Files: point_input_file: ../depth_canopy.txt output_centers_file: prof_canopy canopy_size_stats_file: stat not_processed_points_file: General: num_threads: 16 File loaded into memory, generating points Points read, dropping file from memory Running basic validation of points max_top_three_data_point_proportion: 0.9 min_non_zero_data_samples: 3 Finished reading point input file Observed number of samples per point: 1704 Number of points read: 1058952 Number of points filtered out due to three point sample values proportion filter: 127496 Number of points filtered out due to non zero samples number filter: 14515 Number of points filtered out: 127496 Finished input points processing Number of points after filtering: 931456 Algorithm Parameters: max_canopy_dist: 0.1 max_close_dist: 0.4 max_merge_dist: 0.1 min_step_dist: 0.005 max_num_canopy_walks: 5 Early stopping: stop_proportion_of_points: 1 ############ Shuffling ############ ############ Creating Canopies ############ Avg. number of canopy walks: 0.290456 Number of canopies before merging: 252159 ############Merging canopies############# Number of canopies after merging: 205786 Finished clustering, number of canopies:205786 Finished filtering by medians, number of canopies:205753 Finished filtering by single data point proportion, number of canopies:205734 Finished filtering by size(number of neighbours must be bigger than 1), number of canopies:24056 ####################Writing Results#################### Exit [0] 1214774.91 user, 552.68 system, 129981.81 elapsed -- Max VSize = 35946800KB, Max RSS = 35556936KB