CSRMatrixMPI.hpp
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33 #ifndef STRUMPACK_CSRMATRIX_MPI_HPP
34 #define STRUMPACK_CSRMATRIX_MPI_HPP
35 
36 #include <vector>
37 #include <tuple>
38 #include <memory>
39 
40 #include "CSRMatrix.hpp"
41 #include "misc/MPIWrapper.hpp"
42 #include "dense/BLASLAPACKWrapper.hpp"
43 #include "CSRGraph.hpp"
44 
45 
46 namespace strumpack {
47 
48  template<typename scalar_t,typename integer_t> class SPMVBuffers {
49  public:
50  bool initialized = false;
51  std::vector<integer_t> sranks, rranks, soff, roffs, sind;
52  std::vector<scalar_t> sbuf, rbuf;
53  // for each off-diagonal entry spmv_prbuf stores the
54  // corresponding index in the receive buffer
55  std::vector<integer_t> prbuf;
56  };
57 
58 
71  template<typename scalar_t,typename integer_t>
72  class CSRMatrixMPI : public CompressedSparseMatrix<scalar_t,integer_t> {
76  using real_t = typename RealType<scalar_t>::value_type;
79 
80  public:
81  CSRMatrixMPI();
82  CSRMatrixMPI(integer_t local_rows, const integer_t* row_ptr,
83  const integer_t* col_ind, const scalar_t* values,
84  const integer_t* dist, MPIComm comm, bool symm_sparse);
85  CSRMatrixMPI(integer_t lrows, const integer_t* d_ptr,
86  const integer_t* d_ind, const scalar_t* d_val,
87  const integer_t* o_ptr, const integer_t* o_ind,
88  const scalar_t* o_val, const integer_t* garray,
89  MPIComm comm, bool symm_sparse=false);
91  bool only_at_root);
92 
93  integer_t local_nnz() const { return lnnz_; }
94  integer_t local_rows() const { return lrows_; }
95  integer_t begin_row() const { return brow_; }
96  integer_t end_row() const { return brow_ + lrows_; }
97  MPIComm Comm() const { return comm_; }
98  MPI_Comm comm() const { return comm_.comm(); }
99 
100  const std::vector<integer_t>& dist() const { return dist_; }
101  const integer_t& dist(std::size_t p) const {
102  assert(p < dist_.size());
103  return dist_[p];
104  }
105 
106  void spmv(const DenseM_t& x, DenseM_t& y) const override;
107  void spmv(const scalar_t* x, scalar_t* y) const override;
108 
109  void permute(const integer_t* iorder, const integer_t* order) override;
110 
111  std::unique_ptr<CSRMatrix<scalar_t,integer_t>> gather() const;
112  std::unique_ptr<CSRGraph<integer_t>> gather_graph() const;
113 
114 
129  Match_t matching(MatchingJob job, bool apply=true) override;
130 
131  Equil_t equilibration() const override;
132 
133  void equilibrate(const Equil_t&) override;
134 
135  void permute_columns(const std::vector<integer_t>& perm) override;
136 
137  void symmetrize_sparsity() override;
138 
139  int read_matrix_market(const std::string& filename) override;
140 
141  real_t max_scaled_residual(const DenseM_t& x, const DenseM_t& b)
142  const override;
143 
144  real_t max_scaled_residual(const scalar_t* x, const scalar_t* b)
145  const override;
146 
148  get_sub_graph(const std::vector<integer_t>& perm,
149  const std::vector<std::pair<integer_t,integer_t>>&
150  graph_ranges) const;
151 
153  extract_graph(int ordering_level,
154  integer_t lo, integer_t hi) const override {
155  assert(false);
156  return CSRGraph<integer_t>();
157  }
158 
159  void print() const override;
160  void print_dense(const std::string& name) const override;
161  void print_matrix_market(const std::string& filename) const override;
162  void check() const;
163 
164 
165 #ifndef DOXYGEN_SHOULD_SKIP_THIS
166  // implement outside of this class
167  void extract_separator
168  (integer_t, const std::vector<std::size_t>&,
169  const std::vector<std::size_t>&, DenseM_t&, int) const override {}
170  void extract_separator_2d
171  (integer_t, const std::vector<std::size_t>&,
172  const std::vector<std::size_t>&, DistM_t&) const override {}
173  void extract_front
174  (DenseM_t&, DenseM_t&, DenseM_t&, integer_t,
175  integer_t, const std::vector<integer_t>&, int) const override {}
176  void push_front_elements
177  (integer_t, integer_t, const std::vector<integer_t>&,
178  std::vector<Triplet<scalar_t>>&,
179  std::vector<Triplet<scalar_t>>&,
180  std::vector<Triplet<scalar_t>>&) const override {}
181 
182  void extract_F11_block
183  (scalar_t*, integer_t, integer_t, integer_t,
184  integer_t, integer_t) const override {}
185  void extract_F12_block
186  (scalar_t*, integer_t, integer_t, integer_t, integer_t,
187  integer_t, const integer_t*) const override {}
188  void extract_F21_block
189  (scalar_t*, integer_t, integer_t, integer_t, integer_t,
190  integer_t, const integer_t*) const override {}
191  void front_multiply
192  (integer_t, integer_t, const std::vector<integer_t>&,
193  const DenseM_t&, DenseM_t&, DenseM_t&, int depth) const override {}
194  void front_multiply_2d
195  (integer_t, integer_t, const std::vector<integer_t>&, const DistM_t&,
196  DistM_t&, DistM_t&, int) const override {}
197  void front_multiply_2d
198  (Trans op, integer_t, integer_t, const std::vector<integer_t>&,
199  const DistM_t&, DistM_t&, int) const override {}
200 
201  CSRGraph<integer_t> extract_graph_sep_CB
202  (int ordering_level, integer_t lo, integer_t hi,
203  const std::vector<integer_t>& upd) const override {
204  return CSRGraph<integer_t>(); };
205  CSRGraph<integer_t> extract_graph_CB_sep
206  (int ordering_level, integer_t lo, integer_t hi,
207  const std::vector<integer_t>& upd) const override {
208  return CSRGraph<integer_t>(); };
209  CSRGraph<integer_t> extract_graph_CB
210  (int ordering_level, const std::vector<integer_t>& upd) const override {
211  return CSRGraph<integer_t>(); };
212 
213  void front_multiply_F11
214  (Trans op, integer_t slo, integer_t shi,
215  const DenseM_t& R, DenseM_t& S, int depth) const override {};
216  void front_multiply_F12
217  (Trans op, integer_t slo, integer_t shi, const std::vector<integer_t>& upd,
218  const DenseM_t& R, DenseM_t& S, int depth) const override {};
219  void front_multiply_F21
220  (Trans op, integer_t slo, integer_t shi, const std::vector<integer_t>& upd,
221  const DenseM_t& R, DenseM_t& S, int depth) const override {};
222 #endif //DOXYGEN_SHOULD_SKIP_THIS
223 
224  protected:
225  void split_diag_offdiag();
226  void setup_spmv_buffers() const;
227 
228  // TODO use MPIComm
229  MPIComm comm_;
230 
236  std::vector<integer_t> dist_;
237 
242  std::vector<integer_t> offdiag_start_;
243 
244  integer_t brow_; // = dist_[rank], dist_[rank+1]
245  integer_t lrows_; // = erow_ - brow_
246  integer_t lnnz_; // = ptr_[local_rows]
247 
248  mutable SPMVBuffers<scalar_t,integer_t> spmv_bufs_;
249 
250 
254  void scale(const std::vector<scalar_t>& lDr,
255  const std::vector<scalar_t>& gDc) override;
256  void scale_real(const std::vector<real_t>& lDr,
257  const std::vector<real_t>& gDc) override;
258 
259  using CSM_t::n_;
260  using CSM_t::nnz_;
261  using CSM_t::ptr_;
262  using CSM_t::ind_;
263  using CSM_t::val_;
264  using CSM_t::symm_sparse_;
265  };
266 
267 } // end namespace strumpack
268 
269 #endif // STRUMPACK_CSRMATRIX_MPI_HPP
strumpack::Equilibration< scalar_t >
strumpack::MPIComm
Wrapper class around an MPI_Comm object.
Definition: MPIWrapper.hpp:190
strumpack::CSRMatrix
Class for storing a compressed sparse row matrix (single node).
Definition: CSRMatrix.hpp:53
strumpack::Side::R
@ R
strumpack
Definition: StrumpackOptions.hpp:42
strumpack::DistributedMatrix
Definition: CompressedSparseMatrix.hpp:58
strumpack::MPIComm::comm
MPI_Comm comm() const
Definition: MPIWrapper.hpp:257
strumpack::DenseMatrix< scalar_t >
strumpack::CSRMatrixMPI::matching
Match_t matching(MatchingJob job, bool apply=true) override
strumpack::CSRMatrixMPI::spmv
void spmv(const DenseM_t &x, DenseM_t &y) const override
strumpack::CompressedSparseMatrix::symm_sparse
bool symm_sparse() const
Definition: CompressedSparseMatrix.hpp:296
strumpack::SPMVBuffers
Definition: CSRMatrixMPI.hpp:48
strumpack::CSRMatrixMPI
Block-row distributed compressed sparse row storage.
Definition: CSRMatrixMPI.hpp:72
MPIWrapper.hpp
Contains some simple C++ MPI wrapper utilities.
strumpack::CompressedSparseMatrix
Abstract base class for compressed sparse matrix storage.
Definition: CompressedSparseMatrix.hpp:163
strumpack::CSRMatrixMPI::permute
void permute(const integer_t *iorder, const integer_t *order) override
strumpack::Trans
Trans
Definition: DenseMatrix.hpp:50
CSRMatrix.hpp
Contains the compressed sparse row matrix storage class.
strumpack::MatchingData
Definition: CompressedSparseMatrix.hpp:69
strumpack::CSRGraph
Definition: CompressedSparseMatrix.hpp:56
strumpack::MatchingJob
MatchingJob
Definition: StrumpackOptions.hpp:95