These variables control the machine dependent environment including the paths to compilers and libraries external to cime such as netcdf, environment variables for use in the running job should also be set here.

char executable name char redirect for job output /gpfs/fs1/soft/chrysalis/spack/opt/spack/linux-centos8-x86_64/gcc-9.3.0/lmod-8.3-5be73rg/lmod/lmod/init/sh /gpfs/fs1/soft/chrysalis/spack/opt/spack/linux-centos8-x86_64/gcc-9.3.0/lmod-8.3-5be73rg/lmod/lmod/init/csh /gpfs/fs1/soft/chrysalis/spack/opt/spack/linux-centos8-x86_64/gcc-9.3.0/lmod-8.3-5be73rg/lmod/lmod/init/env_modules_python.py /gpfs/fs1/soft/chrysalis/spack/opt/spack/linux-centos8-x86_64/gcc-9.3.0/lmod-8.3-5be73rg/lmod/lmod/libexec/lmod python module module subversion/1.14.0-e4smcy3 perl/5.32.0-bsnc6lt cmake/3.19.1-yisciec intel/20.0.4-kodw73g intel-mkl/2020.4.304-g2qaxzf openmpi/4.1.1-qiqkjbu hdf5/1.8.16-35xugty netcdf-c/4.4.1-2vngykq netcdf-cxx/4.2-gzago6i netcdf-fortran/4.4.4-2kddbib parallel-netcdf/1.11.0-go65een intel-mpi/2019.9.304-tkzvizk hdf5/1.8.16-se4xyo7 netcdf-c/4.4.1-qvxyzq2 netcdf-cxx/4.2-binixgj netcdf-fortran/4.4.4-rdxohvp parallel-netcdf/1.11.0-b74wv4m gcc/9.2.0-ugetvbp intel-mkl/2020.4.304-n3b5fye openmpi/4.1.1-73gbwq4 hdf5/1.8.16-dqjdy2d netcdf-c/4.4.1-y6dun2a netcdf-cxx/4.2-vwlvgn6 netcdf-fortran/4.4.4-4lnfxki parallel-netcdf/1.11.0-3x2favk intel-mpi/2019.9.304-jdih7h5 hdf5/1.8.16-dtbpce3 netcdf-c/4.4.1-zcoa44z netcdf-cxx/4.2-ayxg4c7 netcdf-fortran/4.4.4-2lfr2lr parallel-netcdf/1.11.0-ifdodru /lcrc/group/e3sm/soft/perl/chrys/lib/perl5 $SHELL{dirname $(dirname $(which nc-config))} $SHELL{dirname $(dirname $(which nf-config))} $SHELL{dirname $(dirname $(which pnetcdf_version))} 128M granularity=core,balanced granularity=thread,balanced cores srun --mpi=pmi2 -l -n {{ total_tasks }} -N {{ num_nodes }} --kill-on-bad-exit $SHELL{if [ 64 -ge `./xmlquery --value MAX_MPITASKS_PER_NODE` ]; then echo "--cpu_bind=cores"; else echo "--cpu_bind=threads";fi;} -c $SHELL{echo 128/ {{ tasks_per_node }} |bc} -m plane={{ tasks_per_node }}