(lnd_init_mct) :CLM land model initialization cesm2.1.3-rc.01 Attempting to initialize the land model ..... Attempting to initialize run control settings ..... Read in clm_inparm namelist from: lnd_in Successfully initialized run control settings define run: source = Community Land Model CLM4.0 model_version = cesm2.1.3-rc.01 run type = initial case title = UNSET username = wboos hostname = cori-knl input data files: PFT physiology = /project/projectdirs/ccsm1/inputdata/lnd/clm2/pftdata/pft-physiology.clm40.c130 424.nc surface data = /project/projectdirs/ccsm1/inputdata/lnd/clm2/surfdata/surfdata_0.23x0.31_simyr 2000_c100406.nc land frac data = /project/projectdirs/ccsm1/inputdata/share/domains/domain.lnd.fv0.23x0.31_gx1v6 .100517.nc flndtopo not set fatmtopo not set snow optical properties file = /project/projectdirs/ccsm1/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c09 0915.nc snow aging parameters file = /project/projectdirs/ccsm1/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60 _c070416.nc initial data = cam5clm4F2kclim_ctrl.clm2.r.0008-01-01-00000.nc atmospheric forcing data is from cesm atm model Restart parameters: restart pointer file directory = . restart pointer file name = rpointer.lnd model physics parameters: CO2 volume mixing ratio = diagnostic land-ice albedos (unitless 0-1) = 0.800000000000000 0.550000000000000 urban air conditioning/heating and wasteheat = ON_WASTEHEAT urban traffic flux = F maxpatch_pft = 17 allocate_all_vegpfts = T nsegspc = 20 Attempting to read global land mask from /project/projectdirs/ccsm1/inputdata/share/domains/domain.lnd.fv0.23x0.31_gx1v6 .100517.nc (GETFIL): attempting to find local file domain.lnd.fv0.23x0.31_gx1v6.100517.nc (GETFIL): using /project/projectdirs/ccsm1/inputdata/share/domains/domain.lnd.fv0.23x0.31_gx1v6 .100517.nc lat/lon grid flag (isgrid2d) is T ncd_inqvid: variable LANDMASK is not on dataset decomp precompute numg,nclumps,seglen1,avg_seglen,nsegspc= 311857 13824 F 1.127955 20.00000 Surface Grid Characteristics longitude points = 1152 latitude points = 768 total number of land gridcells = 311857 Decomposition Characteristics clumps per process = 4 gsMap Characteristics lnd gsmap glo num of segs = 276861 Attempting to read ldomain from /project/projectdirs/ccsm1/inputdata/share/domains/domain.lnd.fv0.23x0.31_gx1v6 .100517.nc (GETFIL): attempting to find local file domain.lnd.fv0.23x0.31_gx1v6.100517.nc (GETFIL): using /project/projectdirs/ccsm1/inputdata/share/domains/domain.lnd.fv0.23x0.31_gx1v6 .100517.nc check_var: variable LONGXY is not on dataset ncd_inqvid: variable LANDMASK is not on dataset ncd_inqvid: variable LANDFRAC is not on dataset domain_check set = domain_set domain_check decomped = T domain_check ns = 884736 domain_check ni,nj = 1152 768 domain_check clmlevel = domain_check nbeg,nend = 1 91 domain_check lonc = 0.000000000000000E+000 356.562500000000 domain_check latc = -90.0000000000000 79.4393741851368 domain_check mask = 1 1 domain_check frac = 0.128719089974075 1.00000000000000 domain_check topo = 0.000000000000000E+000 0.000000000000000E+000 domain_check area = 0.464292289319476 906.784375560985 domain_check pftm = -9999 -9999 domain_check glcmask = 0 0 Reading in urban input data from fsurdat file ... (GETFIL): attempting to find local file surfdata_0.23x0.31_simyr2000_c100406.nc (GETFIL): using /project/projectdirs/ccsm1/inputdata/lnd/clm2/surfdata/surfdata_0.23x0.31_simyr 2000_c100406.nc UrbanInput /project/projectdirs/ccsm1/inputdata/lnd/clm2/surfdata/surfdata_0.23x0.31_simyr 2000_c100406.nc Sucessfully read urban input data Attempting to read PFT physiological data ..... (GETFIL): attempting to find local file pft-physiology.clm40.c130424.nc (GETFIL): using /project/projectdirs/ccsm1/inputdata/lnd/clm2/pftdata/pft-physiology.clm40.c130 424.nc Successfully read PFT physiological data Attempting to read surface boundary data ..... (GETFIL): attempting to find local file surfdata_0.23x0.31_simyr2000_c100406.nc (GETFIL): using /project/projectdirs/ccsm1/inputdata/lnd/clm2/surfdata/surfdata_0.23x0.31_simyr 2000_c100406.nc check_var: variable xc is not on dataset surfrd_get_data lon_var = LONGXY lat_var =LATIXY domain_clean: cleaning 1152 768 Successfully read surface boundary data Surface Grid Characteristics longitude points = 1152 latitude points = 768 total number of gridcells = 311857 total number of landunits = 392252 total number of columns = 590464 total number of pfts = 3964096 Decomposition Characteristics clumps per process = 4 gsMap Characteristics lnd gsmap glo num of segs = 276861 gce gsmap glo num of segs = 276480 lun gsmap glo num of segs = 276480 col gsmap glo num of segs = 276480 pft gsmap glo num of segs = 276480 proc= 0 beg gridcell= 1 end gridcell= 91 total gridcells per proc= 91 proc= 0 beg landunit= 1 end landunit= 110 total landunits per proc= 110 proc= 0 beg column = 1 end column = 154 total columns per proc = 154 proc= 0 beg pft = 1 end pft = 1146 total pfts per proc = 1146 proc= 0 lnd ngseg = 276861 lnd nlseg = 81 proc= 0 gce ngseg = 276480 gce nlseg = 80 proc= 0 lun ngseg = 276480 lun nlseg = 80 proc= 0 col ngseg = 276480 col nlseg = 80 proc= 0 pft ngseg = 276480 pft nlseg = 80 proc= 0 nclumps = 4 proc= 0 clump no = 1 clump id= 1 beg gridcell= 1 end gridcell= 23 total gridcells per clump= 23 proc= 0 clump no = 1 clump id= 1 beg landunit= 1 end landunit= 27 total landunits per clump = 27 proc= 0 clump no = 1 clump id= 1 beg column = 1 end column = 39 total columns per clump = 39 proc= 0 clump no = 1 clump id= 1 beg pft = 1 end pft = 295 total pfts per clump = 295 ---clm_ptrs_check: clm_ptrs_check: g index ranges - OK clm_ptrs_check: l index ranges - OK clm_ptrs_check: c index ranges - OK clm_ptrs_check: p index ranges - OK clm_ptrs_check: g mono increasing - OK clm_ptrs_check: l mono increasing - OK clm_ptrs_check: c mono increasing - OK clm_ptrs_check: p mono increasing - OK clm_ptrs_check: tree consistent - OK Attempting to initialize time invariant variables Attempting to read soil color, sand and clay boundary data ..... (GETFIL): attempting to find local file surfdata_0.23x0.31_simyr2000_c100406.nc (GETFIL): using /project/projectdirs/ccsm1/inputdata/lnd/clm2/surfdata/surfdata_0.23x0.31_simyr 2000_c100406.nc Successfully read fmax, soil color, sand and clay boundary data Attempting to read organic matter data ..... organicrd /project/projectdirs/ccsm1/inputdata/lnd/clm2/surfdata/surfdata_0.23x0.31_simyr 2000_c100406.nc (GETFIL): attempting to find local file surfdata_0.23x0.31_simyr2000_c100406.nc (GETFIL): using /project/projectdirs/ccsm1/inputdata/lnd/clm2/surfdata/surfdata_0.23x0.31_simyr 2000_c100406.nc Successfully read organic matter data Attempting to read snow optical properties ..... (GETFIL): attempting to find local file snicar_optics_5bnd_c090915.nc (GETFIL): using /project/projectdirs/ccsm1/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c09 0915.nc SnowOptics_init /project/projectdirs/ccsm1/inputdata/lnd/clm2/snicardata/snicar_optics_5bnd_c09 0915.nc Successfully read snow optical properties SNICAR: Mie single scatter albedos for direct-beam ice, rds=100um: 0.999988554642975 0.999681037198863 0.997607605675971 0.986497934250590 0.863625011159058 SNICAR: Mie single scatter albedos for diffuse ice, rds=100um: 0.999988688305644 0.999695704867021 0.997641261479875 0.988424521328148 0.874095913192701 SNICAR: Excluding OC aerosols from snow radiative transfer calculations SNICAR: Mie single scatter albedos for hydrophillic BC: 0.515945305512804 0.434313626536424 0.346103765992635 0.275522926330555 0.138576096442815 SNICAR: Mie single scatter albedos for hydrophobic BC: 0.287685315976181 0.186577277125224 0.123152237089201 8.834628859055429E-002 4.034215622693781E-002 SNICAR: Mie single scatter albedos for dust species 1: 0.978911057153050 0.994175916042451 0.993357580762207 0.992545751316266 0.953291550046772 SNICAR: Mie single scatter albedos for dust species 2: 0.943752248802793 0.984191668599419 0.989309063917025 0.991793946836264 0.982999590668913 SNICAR: Mie single scatter albedos for dust species 3: 0.904044530646049 0.964651629694555 0.968275809551522 0.972598419874107 0.977612418329876 SNICAR: Mie single scatter albedos for dust species 4: 0.849818195355416 0.940460325044343 0.948316305534169 0.952841175117807 0.955379528193802 Attempting to read snow aging parameters ..... (GETFIL): attempting to find local file snicar_drdt_bst_fit_60_c070416.nc (GETFIL): using /project/projectdirs/ccsm1/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60 _c070416.nc SnowOptics_init /project/projectdirs/ccsm1/inputdata/lnd/clm2/snicardata/snicar_drdt_bst_fit_60 _c070416.nc Successfully read snow aging properties SNICAR: snowage tau for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 6.32058002982679 SNICAR: snowage kappa for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 1.56696894189530 SNICAR: snowage dr/dt_0 for T=263K, dTdz = 100 K/m, rhos = 150 kg/m3: 5.48727550274226 Successfully initialized time invariant variables (GETFIL): attempting to find local file cam5clm4F2kclim_ctrl.clm2.r.0008-01-01-00000.nc (GETFIL): using cam5clm4F2kclim_ctrl.clm2.r.0008-01-01-00000.nc in current working directory CLM_hist_printflds : number of master fields = 206 ******* MASTER FIELD LIST ******* 1 SNOWDP m 2 FSNO unitless 3 TSA K 4 TSA_U K 5 TSA_R K 6 TBUILD K 7 TREFMNAV K 8 TREFMXAV K 9 TREFMNAV_U K 10 TREFMXAV_U K 11 TREFMNAV_R K 12 TREFMXAV_R K 13 TV K 14 TV24 K 15 TV240 K 16 TG K 17 TG_U K 18 TG_R K 19 HCSOI MJ/m2 20 HC MJ/m2 21 TSOI K 22 TSOI_ICE K 23 TSOI_10CM K 24 TLAKE K 25 Q2M kg/kg 26 RH2M % 27 RH2M_U % 28 RH2M_R % 29 U10 m/s 30 VA m/s 31 SABV W/m^2 32 SABG W/m^2 33 FSDSVD W/m^2 34 FSDSND W/m^2 35 FSDSVI W/m^2 36 FSDSNI W/m^2 37 FSRVD W/m^2 38 FSRND W/m^2 39 FSRVI W/m^2 40 FSRNI W/m^2 41 FSDSVDLN W/m^2 42 FSDSNDLN W/m^2 43 FSRVDLN W/m^2 44 FSRNDLN W/m^2 45 FSA W/m^2 46 FSA_U W/m^2 47 FSA_R W/m^2 48 FSR W/m^2 49 SWup W/m^2 50 FIRA W/m^2 51 FIRA_U W/m^2 52 FIRA_R W/m^2 53 FIRE W/m^2 54 LWup W/m^2 55 BUILDHEAT W/m^2 56 URBAN_AC W/m^2 57 URBAN_HEAT W/m^2 58 TRAFFICFLUX W/m^2 59 WASTEHEAT W/m^2 60 HEAT_FROM_AC W/m^2 61 Qanth W/m^2 62 Rnet W/m^2 63 COSZEN none 64 DECL radians 65 FCTR W/m^2 66 FCEV W/m^2 67 FGEV W/m^2 68 FSH_NODYNLNDUSE W/m^2 69 FSH W/m^2 70 FSH_U W/m^2 71 FSH_R W/m^2 72 GC_HEAT1 J/m^2 73 GC_HEAT2 J/m^2 74 EFLX_DYNBAL W/m^2 75 Qh W/m^2 76 Qle W/m^2 77 EFLX_LH_TOT_U W/m^2 78 EFLX_LH_TOT_R W/m^2 79 Qstor W/m^2 80 FSH_V W/m^2 81 FSH_G W/m^2 82 FGR W/m^2 83 FGR_U W/m^2 84 FGR_R W/m^2 85 FSM W/m^2 86 FSM_U W/m^2 87 FSM_R W/m^2 88 FGR12 W/m^2 89 TAUX kg/m/s^2 90 Qtau kg/m/s^2 91 TAUY kg/m/s^2 92 ELAI m^2/m^2 93 ESAI m^2/m^2 94 LAISUN none 95 LAISHA none 96 TLAI none 97 TSAI none 98 SLASUN m^2/gC 99 SLASHA m^2/gC 100 RSSUN s/m 101 RSSHA s/m 102 BTRAN unitless 103 FPSN umol/m2s 104 DSTFLXT kg/m2/s 105 DPVLTRB1 m/s 106 DPVLTRB2 m/s 107 DPVLTRB3 m/s 108 DPVLTRB4 m/s 109 FSUN24 K 110 FSUN240 K 111 FSI24 K 112 FSI240 K 113 FSD24 K 114 FSD240 K 115 SoilAlpha unitless 116 SoilAlpha_U unitless 117 FCOV unitless 118 FSAT unitless 119 ZWT m 120 WA mm 121 WT mm 122 QCHARGE mm/s 123 SMP mm 124 HK mm/s 125 H2OSNO mm 126 ERRH2OSNO mm 127 SNOW_SOURCES mm/s 128 SNOW_SINKS mm/s 129 H2OCAN mm 130 H2OSOI mm3/mm3 131 SOILLIQ kg/m2 132 SOILICE kg/m2 133 SOILWATER_10CM kg/m2 134 SNOWLIQ kg/m2 135 SNOWICE kg/m2 136 QTOPSOIL mm/s 137 QINFL mm/s 138 QOVER mm/s 139 QRGWL mm/s 140 QSNWCPLIQ mm H2O/s 141 QSNWCPICE_NODYNLNDUSE mm H2O/s 142 QSNWCPICE mm/s 143 QDRAI mm/s 144 QRUNOFF_NODYNLNDUSE mm/s 145 QRUNOFF mm/s 146 GC_LIQ1 mm 147 GC_LIQ2 mm 148 QFLX_LIQ_DYNBAL mm/s 149 GC_ICE1 mm 150 GC_ICE2 mm 151 QFLX_ICE_DYNBAL mm/s 152 QRUNOFF_U mm/s 153 QRUNOFF_R mm/s 154 QINTR mm/s 155 QDRIP mm/s 156 QSNOMELT mm/s 157 QSNOFRZ kg/m2/s 158 QSOIL mm/s 159 QVEGE mm/s 160 QVEGT mm/s 161 QIRRIG mm/s 162 ERRSOI W/m^2 163 ERRSEB W/m^2 164 ERRSOL W/m^2 165 ERRH2O mm 166 RAIN mm/s 167 SNOW mm/s 168 TBOT K 169 THBOT K 170 WIND m/s 171 Wind m/s 172 Tair K 173 PSurf Pa 174 Rainf mm/s 175 SWdown W/m^2 176 LWdown W/m^2 177 RH % 178 QBOT kg/kg 179 Qair kg/kg 180 ZBOT m 181 FLDS W/m^2 182 FSDS W/m^2 183 PCO2 Pa 184 PBOT Pa 185 SNORDSL m^-6 186 SNOTTOPL K/m 187 SNOdTdzL K/m 188 SNOLIQFL fraction 189 SNOFSRVD W/m^2 190 SNOFSRND W/m^2 191 SNOFSRVI W/m^2 192 SNOFSRNI W/m^2 193 SNOFSDSVD W/m^2 194 SNOFSDSND W/m^2 195 SNOFSDSVI W/m^2 196 SNOFSDSNI W/m^2 197 H2OSNO_TOP kg/m2 198 SNOBCMCL kg/m2 199 SNOBCMSL kg/m2 200 SNOOCMCL kg/m2 201 SNOOCMSL kg/m2 202 SNODSTMCL kg/m2 203 SNODSTMSL kg/m2 204 DSTDEP kg/m^2/s 205 BCDEP kg/m^2/s 206 OCDEP kg/m^2/s ******** CLM Time Manager Configuration ******** Calendar type: NO_LEAP Timestep size (seconds): 225 Start date (yr mon day tod): 8 1 1 0 Stop date (yr mon day tod): 10 1 1 0 Reference date (yr mon day tod): 8 1 1 0 Current step number: 0 Ending step number: -999999999 Current date (yr mon day tod): 8 1 1 0 ************************************************ Initializing variables for time accumulation ..... ------------------------------------------------------------ Accumulated fields No Name Units Type Period Inival Description _______________________________________________________________________ 1 TREFAV K timeavg 16 0. average over an hour of 2-m temperature 2 TREFAV_U K timeavg 16 0. average over an hour of urban 2-m temper 3 TREFAV_R K timeavg 16 0. average over an hour of rural 2-m temper 4 T_VEG24 K runmean 384 0. 24hr average of vegetation temperature 5 T_VEG240 K runmean 3840 0. 240hr average of vegetation temperature 6 FSD24 W/m2 runmean 384 0. 24hr average of direct solar radiation 7 FSD240 W/m2 runmean 3840 0. 240hr average of direct solar radiation 8 FSI24 W/m2 runmean 384 0. 24hr average of diffuse solar radiation 9 FSI240 W/m2 runmean 3840 0. 240hr average of diffuse solar radiation 10 FSUN24 fraction runmean 384 0. 24hr average of diffuse solar radiation 11 FSUN240 fraction runmean 3840 0. 240hr average of diffuse solar radiation 12 LAIP m2/m2 runmean 3840 0. leaf area index average over timestep _______________________________________________________________________ ------------------------------------------------------------ Successfully initialized variables for accumulation reading restart file cam5clm4F2kclim_ctrl.clm2.r.0008-01-01-00000.nc Reading restart dataset ------------------------------------------------------------ Successfully read restart data for restart run hist_htapes_build Initializing clm2 history files ------------------------------------------------------------ htapes_fieldlist : Included fields tape 1 = 150 1 BCDEP 1 A 2 BTRAN 1 A 3 BUILDHEAT 1 A 4 DSTDEP 1 A 5 DSTFLXT 1 A 6 EFLX_DYNBAL 1 A 7 EFLX_LH_TOT_R 1 A 8 EFLX_LH_TOT_U 1 A 9 ELAI 1 A 10 ERRH2O 1 A 11 ERRH2OSNO 1 A 12 ERRSEB 1 A 13 ERRSOI 1 A 14 ERRSOL 1 A 15 ESAI 1 A 16 FCEV 1 A 17 FCOV 1 A 18 FCTR 1 A 19 FGEV 1 A 20 FGR 1 A 21 FGR12 1 A 22 FGR_R 1 A 23 FGR_U 1 A 24 FIRA 1 A 25 FIRA_R 1 A 26 FIRA_U 1 A 27 FIRE 1 A 28 FLDS 1 A 29 FPSN 1 A 30 FSA 1 A 31 FSAT 1 A 32 FSA_R 1 A 33 FSA_U 1 A 34 FSDS 1 A 35 FSDSND 1 A 36 FSDSNDLN 1 A 37 FSDSNI 1 A 38 FSDSVD 1 A 39 FSDSVDLN 1 A 40 FSDSVI 1 A 41 FSH 1 A 42 FSH_G 1 A 43 FSH_NODYNLNDUSE 1 A 44 FSH_R 1 A 45 FSH_U 1 A 46 FSH_V 1 A 47 FSM 1 A 48 FSM_R 1 A 49 FSM_U 1 A 50 FSNO 1 A 51 FSR 1 A 52 FSRND 1 A 53 FSRNDLN 1 A 54 FSRNI 1 A 55 FSRVD 1 A 56 FSRVDLN 1 A 57 FSRVI 1 A 58 GC_HEAT1 1 A 59 GC_ICE1 1 A 60 GC_LIQ1 1 A 61 H2OCAN 1 A 62 H2OSNO 1 A 63 H2OSNO_TOP 1 A 64 H2OSOI 15 A 65 HC 1 A 66 HCSOI 1 A 67 HEAT_FROM_AC 1 A 68 LAISHA 1 A 69 LAISUN 1 A 70 OCDEP 1 A 71 PBOT 1 A 72 PCO2 1 A 73 Q2M 1 A 74 QBOT 1 A 75 QCHARGE 1 A 76 QDRAI 1 A 77 QDRIP 1 A 78 QFLX_ICE_DYNBAL 1 A 79 QFLX_LIQ_DYNBAL 1 A 80 QINFL 1 A 81 QINTR 1 A 82 QIRRIG 1 A 83 QOVER 1 A 84 QRGWL 1 A 85 QRUNOFF 1 A 86 QRUNOFF_NODYNLNDUSE 1 A 87 QRUNOFF_R 1 A 88 QRUNOFF_U 1 A 89 QSNOMELT 1 A 90 QSNWCPICE 1 A 91 QSNWCPICE_NODYNLNDUSE 1 A 92 QSOIL 1 A 93 QVEGE 1 A 94 QVEGT 1 A 95 RAIN 1 A 96 RH2M 1 A 97 RH2M_R 1 A 98 RH2M_U 1 A 99 SABG 1 A 100 SABV 1 A 101 SNOBCMCL 1 A 102 SNOBCMSL 1 A 103 SNODSTMCL 1 A 104 SNODSTMSL 1 A 105 SNOOCMCL 1 A 106 SNOOCMSL 1 A 107 SNOW 1 A 108 SNOWDP 1 A 109 SNOWICE 1 A 110 SNOWLIQ 1 A 111 SNOW_SINKS 1 A 112 SNOW_SOURCES 1 A 113 SOILICE 15 A 114 SOILLIQ 15 A 115 SOILWATER_10CM 1 A 116 SoilAlpha 1 A 117 SoilAlpha_U 1 A 118 TAUX 1 A 119 TAUY 1 A 120 TBOT 1 A 121 TBUILD 1 A 122 TG 1 A 123 TG_R 1 A 124 TG_U 1 A 125 THBOT 1 A 126 TLAI 1 A 127 TLAKE 10 A 128 TREFMNAV 1 A 129 TREFMNAV_R 1 A 130 TREFMNAV_U 1 A 131 TREFMXAV 1 A 132 TREFMXAV_R 1 A 133 TREFMXAV_U 1 A 134 TSA 1 A 135 TSAI 1 A 136 TSA_R 1 A 137 TSA_U 1 A 138 TSOI 15 A 139 TSOI_10CM 1 A 140 TSOI_ICE 15 A 141 TV 1 A 142 U10 1 A 143 URBAN_AC 1 A 144 URBAN_HEAT 1 A 145 WA 1 A 146 WASTEHEAT 1 A 147 WIND 1 A 148 WT 1 A 149 ZBOT 1 A 150 ZWT 1 A There will be a total of 1 history tapes History tape 1 write frequency is MONTHLY All fields on history tape 1 are grid averaged Number of time samples on history tape 1 is 1 Output precision on history tape 1 = 2 hist_htapes_build hist tape = 1 written with dov2xy= T hist_htapes_build Successfully initialized clm2 history files ------------------------------------------------------------ Successfully initialized the land model begin initial run at: nstep= 0 year= 8 month= 1 day= 1 seconds= 0 ************************************************************ dtime_sync= 225 dtime_clm= 225 mod = 0