members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 31 4788 180879 43639951 4467 259 1 43366698 0 2 Bacteria superkingdom phylum 68297 0 1710 5 5 1710 203486 0 class 9 5 order Dictyoglomales 0 203487 1710 1 1 4 1701 1 family Dictyoglomaceae 0 203488 4 3 Dictyoglomus genus 13 0 1700 1 Dictyoglomus thermophilum species 14 0 1003 1 0 513050 Dictyoglomus turgidum species 693 1 512 0 2498710 clade 5 512 phylum 0 67814 5 1 5 Caldisericia class 0 693071 512 1 15 4 511 1 Caldisericales order 693072 0 5 3 family Caldisericaceae 0 693073 496 1 2 1 0 693074 Caldisericum genus 1 491 1 490 Caldisericum exile species 693075 0 379 17334912 0 1783270 clade clade 0 68336 17321659 364 phylum 1134404 0 3271 7 3271 1 Ignavibacteria class 0 795747 1 7 3270 1 Ignavibacteriales order 795748 0 7 6 1 3 Ignavibacteriaceae family 0 795749 1393 1 0 795750 Ignavibacterium genus 1 1392 2 2 species Ignavibacterium album 591197 0 1390 1 family 1334117 0 1870 2 2 8 1134403 0 Melioribacter genus 1 1870 1862 Melioribacter roseus species 0 1134405 1 22 phylum 1090 0 23637 22 108 0 191410 class Chlorobia 1 23637 0 191411 order Chlorobiales 1 23529 21 189 20 127 0 191412 Chlorobiaceae family 1 23340 no rank 274493 0 8641 8 3732 1 genus Pelodictyon 1099 0 15 3 1 species Pelodictyon luteolum 0 1100 2540 1 34090 0 species Pelodictyon phaeoclathratiforme 1177 genus Chlorobium 1091 0 4909 1 3 5 1 0 1096 species Chlorobium phaeobacteroides 1939 1652 0 1092 Chlorobium limicola species 1 0 1094 species Chlorobium phaeovibrioides 870 1 1 445 0 337090 Chlorobium chlorochromatii species 116 4 Chlorobaculum genus 256319 0 8085 1 1 274537 0 species Chlorobaculum limnaeum 3350 0 274539 Chlorobaculum parvum species 2702 1 1917 1097 0 species Chlorobaculum tepidum 1 13 5 5240 1 genus Prosthecochloris 1101 0 no rank 2632826 0 4012 3 1 0 1868325 species Prosthecochloris sp. CIB 2401 858 1 Prosthecochloris sp. GSB1 species 0 281093 1816 1974213 0 Prosthecochloris sp. HL-130-GSB species 1338 1 1 species Prosthecochloris aestuarii 0 1102 1215 100715 0 Chloroherpeton genus 1 1247 2 2 1245 0 100716 Chloroherpeton thalassium species 1 68 335 17294751 1 Bacteroidetes phylum 976 0 4 7 class Saprospiria 0 1937959 4267 1 4263 1 order Saprospirales 0 1936988 34 6 0 89374 family 1157 2 2 1 1 1157 0 1007 genus Saprospira 1156 0 1008 Saprospira grandis species 1 3 4 1937961 0 family Haliscomenobacteraceae 1 3072 1 3068 2349 0 Haliscomenobacter genus 2 3 3065 species Haliscomenobacter hydrossis 2350 0 1 Chitinophagia class 0 1853228 19544 1 39 17 16 43 1 19505 1853229 0 Chitinophagales order 19462 1 family Chitinophagaceae 0 563835 158 15 1 1781 0 1769012 Arachidicoccus genus 2 2 1 1779 2636138 0 no rank 1 1779 species Arachidicoccus sp. BS20 1850526 0 2 2 2935 1 Niastella genus 354354 0 1 species Niastella koreensis 0 354356 2933 1 4489 379899 0 Niabella genus 3 10 1 Niabella soli species 0 446683 2344 0 1176587 species Niabella ginsenosidivorans 2135 1 10 2 Flavisolibacter genus 398041 0 1524 1 Flavisolibacter tropicus species 1492898 0 1514 1 10 2 2804 1 Filimonas genus 649460 0 1 2794 Filimonas lacunae species 0 477680 3 4 79328 0 Chitinophaga genus 1 5771 1 1782 2029983 0 species Chitinophagaceae bacterium 13 1 Chitinophaga pinensis species 79329 0 3985 1 91200 768503 0 class Cytophagia 61 156 478 60 91044 1 order Cytophagales 768507 0 Bernardetiaceae family 0 1937968 1773 1 19 3 2 2 0 1937972 Bernardetia genus 1 1754 1 Bernardetia litoralis species 999 0 1752 3 1 1 2720 0 1853234 family Persicobacteraceae 2 28 59740 0 Persicobacter genus 1 2719 2691 0 2664020 no rank 1 species Persicobacter sp. JZB09 1085624 0 2691 1 1501348 0 Amoebophilaceae family 1 884 4 2 491 0 281119 genus 1 491 species Candidatus Amoebophilus asiaticus 281120 0 1 391 1 Candidatus Cardinium genus 0 273135 1 2 1 0 2641185 no rank 390 Cardinium endosymbiont of Encarsia pergandiella species 249402 0 390 1 2 family 0 2762301 1053 31 2 1053 1 genus Marivirga 869806 0 1 1022 Marivirga tractuosa species 0 1006 Cyclobacteriaceae family 0 563798 8087 1 102 10 1 1235 0 246875 genus Algoriphagus 2 5 1727163 0 species Algoriphagus sp. M8-2 1230 1 1 3189 0 68288 Cyclobacterium genus 3 16 species Cyclobacterium amurskyense 320787 0 1644 1 1529 Cyclobacterium marinum species 0 104 1 1 1450 232244 0 genus Belliella 2 3 0 232259 species Belliella baltica 1447 1 1 2111 0 390846 genus Echinicola 2 2 1 2109 Echinicola vietnamensis species 390884 0 200667 0 Flammeovirgaceae family 1 5380 4 4 2941 340671 0 no rank 1 0 1257021 species Flammeovirgaceae bacterium 311 2941 1 0 59739 Flammeovirga genus 1 2435 2 2 1 no rank 0 2637820 2433 1 2433 1191459 0 species Flammeovirga sp. MY04 1 46272 1853232 0 family Hymenobacteraceae 16 166 1 33361 0 89966 Hymenobacter genus 8 396 0 1446467 species Hymenobacter swuensis 4250 1 1 5029 1411621 0 species Hymenobacter sedentarius 23686 2615202 0 no rank 5 4107 Hymenobacter sp. DG25B species 1385664 0 1 0 1484116 Hymenobacter sp. PAMC 26554 species 4777 1 1 1484118 0 Hymenobacter sp. PAMC 26628 species 5749 5986 Hymenobacter sp. APR13 species 0 1356852 1 1 1385663 0 species Hymenobacter sp. DG25A 3067 16 3 5710 1 genus Pontibacter 323449 0 3292 0 388950 Pontibacter akesuensis species 1 1 0 400092 Pontibacter korlensis species 2402 1 7035 1379908 0 Rufibacter genus 4 23 2334 0 512763 species Rufibacter tibetensis 1 2 4678 2639626 0 no rank 2549 species Rufibacter sp. DG15C 1379909 0 1 1379910 0 species Rufibacter sp. DG31D 2129 1 24397 1 Cytophagaceae family 89373 0 127 17 1 2 2069 1 Fibrella genus 0 861914 2068 0 2620963 no rank 1 1834519 0 Fibrella sp. ES10-3-2-2 species 2068 1 8 2 3531 1 Dyadobacter genus 0 120831 3523 species Dyadobacter fermentans 0 94254 1 1 2215 0 319458 genus Leadbetterella 2 3 2212 Leadbetterella byssophila species 316068 0 1 0 105 genus Runella 1 3006 2 15 2991 Runella slithyformis species 0 106 1 47 6 11077 1 genus Spirosoma 107 0 species Spirosoma montaniterrae 0 1178516 2754 1 1 564064 0 Spirosoma rigui species 1883 2565 0 2057025 species Spirosoma sp. HA7 1 1886 0 1211326 species Spirosoma aerolatum 1 1942 0 1379870 species Spirosoma radiotolerans 1 1 2 2372 1 Cytophaga genus 978 0 2371 0 985 species Cytophaga hutchinsonii 1 107 145 296594 1 Flavobacteriia class 117743 0 157 144 296487 1 order Flavobacteriales 200644 0 7 0 246874 Cryomorphaceae family 1 2152 101 195124 1 family Flavobacteriaceae 0 49546 1 14350 237 0 genus Flavobacterium 9 15 1 Flavobacterium indicum species 0 312277 1278 1 species Flavobacterium columnare 0 996 2334 0 1763534 species Flavobacterium crassostreae 837 1 1492737 0 Flavobacterium gilvum species 1629 1 1 species Flavobacterium psychrophilum 0 96345 829 1 979 Flavobacterium branchiophilum species 55197 0 Flavobacterium johnsoniae species 0 986 4734 1 1 0 1306519 species Flavobacterium commune 1715 2 2541 111500 0 genus 1 species Muricauda ruestringensis 111501 0 1361 1 1180 species Muricauda lutaonensis 516051 0 3 4 2781 1 genus Lacinutrix 0 291183 1486034 0 Lacinutrix venerupis species 990 1 2647285 0 no rank 1788 2 1 857 Lacinutrix sp. Bg11-31 species 2057808 0 species Lacinutrix sp. 5H-3-7-4 0 983544 931 1 4101 1 Maribacter genus 0 252356 14 5 1178778 0 Maribacter cobaltidurans species 1121 1 3 2966 no rank 2615042 0 1 1077 Maribacter sp. 1_2014MBL_MicDiv species 0 1644130 1836467 0 Maribacter sp. T28 species 898 1 1 313603 0 species Maribacter sp. HTCC2170 991 0 1204360 genus 921 1 0 762954 Siansivirga zeaxanthinifaciens species 921 1 6 3 1291 1 genus Formosa 0 225842 no rank 0 2644710 1285 2 1 605 0 1336795 Formosa sp. Hel3_A1_48 species 0 1336794 Formosa sp. Hel1_33_131 species 680 1 1 1145 1518147 0 genus 1 Wenyingzhuangia fucanilytica species 1790137 0 1145 52959 0 Polaribacter genus 1 5467 6 24 1 species Polaribacter reichenbachii 996801 0 1338 1317 Polaribacter vadi species 1774273 0 1 3 196858 0 no rank 2788 698 0 313598 Polaribacter sp. MED152 species 1 2058137 0 species Polaribacter sp. ALD11 1054 1 1 1036 Polaribacter sp. BM10 species 1529069 0 1 3 Winogradskyella genus 0 286104 1871 1 2 1870 no rank 2615021 0 0 1936080 Winogradskyella sp. J14-2 species 911 1 1 959 754409 0 Winogradskyella sp. PG-2 species 1122 genus 0 336276 1 1122 0 2615019 no rank 1 1 2058135 0 Olleya sp. Bg11-27 species 1122 143222 0 genus 1204 1 1204 2633436 0 no rank 1 species Salegentibacter sp. T436 0 1729720 1204 1 3 2 1671 1 genus Zunongwangia 0 417127 0 398743 Zunongwangia profunda species 1668 1 0 363408 genus Nonlabens 1 3308 5 4 328515 0 Nonlabens dokdonensis species 1075 1 2 2615035 0 no rank 1392 1 690 1476901 0 species Nonlabens sp. MIC269 1 Nonlabens sp. MB-3u-79 species 0 2058134 702 1 0 319236 Nonlabens sediminis species 837 92562 1 genus Capnocytophaga 1016 0 97 15 34741 Capnocytophaga leadbetteri species 327575 0 1 4040 0 1017 species Capnocytophaga gingivalis 1 Capnocytophaga haemolytica species 0 45243 1975 1 0 28188 species Capnocytophaga canimorsus 1738 1 1 1587 Capnocytophaga ochracea species 0 1018 1 species Capnocytophaga cynodegmi 0 28189 1041 6 42230 0 2640652 no rank 1199 species Capnocytophaga sp. H2931 0 1945657 1 1221 Capnocytophaga sp. H4358 species 1945658 0 1 1 2202 Capnocytophaga sp. oral taxon 864 species 1316593 0 1 1944 209053 0 species Capnocytophaga sp. ChDC OS43 1 33902 species Capnocytophaga sp. oral taxon 878 0 1316596 Capnocytophaga sp. oral taxon 323 species 1705617 0 1762 1 1 Capnocytophaga stomatis species 1848904 0 1798 1 Capnocytophaga sputigena species 0 1019 3315 genus Lutibacter 358023 0 776 1 4 2 772 1622118 0 Lutibacter profundi species 1 1 1209327 0 genus 1574 1 1803846 0 species Flavivirga eckloniae 1574 0 252306 Robiginitalea genus 1 2226 2 10 1 2216 0 252307 species Robiginitalea biformata 1 0 1649495 genus 1092 1 1092 2622645 0 no rank 1 Seonamhaeicola sp. S2-3 species 1936081 0 1092 4 20 326319 0 genus Dokdonia 1 2783 2615033 0 no rank 2103 2 Dokdonia sp. MED134 species 313590 0 777 1 1326 983548 0 species Dokdonia sp. 4H-3-7-5 1 1 660 species Dokdonia donghaensis 326320 0 1 2 Zobellia genus 0 112040 1632 1 species Zobellia galactanivorans 63186 0 1631 1 1 1441 0 393005 genus 1 1441 Tamlana sp. UJ94 species 0 2069432 837 genus 83612 0 1 1 837 species Psychroflexus torquis 57029 0 20 4 4383 1 Cellulophaga genus 104264 0 species Cellulophaga algicola 0 59600 1632 1 1 0 979 species Cellulophaga lytica 1230 0 76594 species Cellulophaga baltica 1501 1 1 0 1176327 genus 974 1 2636237 0 no rank 974 species Aureitalea sp. RR4-38 0 2094025 974 1 1 4013 0 104267 Tenacibaculum genus 5 11 0 669041 species Tenacibaculum dicentrarchi 953 1 719 107401 0 Tenacibaculum maritimum species 1 1 species Tenacibaculum todarodis 0 1850252 846 1 1484 Tenacibaculum jejuense species 584609 0 1 1057 153265 0 genus species Aequorivita sublithincola 0 101385 1057 1 1 1345 genus 261827 0 1736674 0 species Algibacter alginicilyticus 1345 1 genus 0 2700084 1026 1 1026 1850246 0 Lutibacter sp. LPB0138 species 1 0 216431 genus 650 1 650 0 313588 species Croceibacter atlanticus 1 7 5 genus Gramella 292691 0 6055 1 1 species Gramella forsetii 411153 0 1235 1913577 0 species Gramella sp. LPB0144 1096 1 1772 2126553 0 Gramella sp. SH35 species 1 1945 0 1486245 species Gramella flava 1 1 genus 389486 0 892 no rank 2648869 0 892 1 892 1453352 0 Sediminicola sp. YIK13 species 1 5 81 1 20028 76831 0 Myroides genus 1094 species Myroides profundi 0 480520 1 1 16706 Myroides odoratimimus species 0 76832 2 0 2642485 no rank 2147 1 1146 Myroides sp. ZB35 species 0 1458492 species Myroides sp. A21 1583100 0 1001 1 genus 0 178469 1741 1 1741 616991 0 species Arenibacter algicola 1 61432 0 no rank 4112 2 1 1226 0 531844 species Flavobacteriaceae bacterium 3519-10 species Flavobacteriaceae bacterium UJ101 1150389 0 2886 1 2 1298 1333713 0 family Owenweeksia genus 267986 0 1298 1 13 2 0 253245 Owenweeksia hongkongensis species 1285 1 10 86 39782 0 family Blattabacteriaceae 1 2521 1 2435 34098 0 Blattabacterium genus 9 86 no rank 2647581 0 1562 6 624186 0 species Blattabacterium sp. (Blattella germanica) 472 1 154 39768 0 species Blattabacterium sp. (Mastotermes darwiniensis) 1 1 367488 0 Blattabacterium sp. (Periplaneta americana) species 294 1 179 1186051 0 species Blattabacterium sp. (Blaberus giganteus) 0 367806 species Blattabacterium sp. (Blatta orientalis) 282 1 Blattabacterium sp. (Nauphoeta cinerea) species 1316444 0 181 1 171 Blattabacterium cuenoti species 0 1653831 1 1 species Blattabacterium punctulatus 0 164514 616 2 389 0 1755828 family 1755829 0 genus Ichthyobacterium 1 389 2 1 1 388 242600 0 species Ichthyobacterium seriolicida 1429 1 family Crocinitomicaceae 1853230 0 92 3 11 2 genus Fluviicola 332102 0 1337 1 1 Fluviicola taffensis species 0 191579 1326 595 0 313602 no rank 3 1 315 0 336809 Candidatus Sulcia genus 2 2 1 species Candidatus Sulcia muelleri 336810 0 313 1 1940138 0 genus 280 1 280 Candidatus Walczuchella monophlebidarum species 1415657 0 21 2762318 0 family 94967 40058 1 genus Ornithobacterium 28250 0 101 2 1 Ornithobacterium rhinotracheale species 0 28251 39957 no rank 0 2782232 37716 10 59732 0 Chryseobacterium genus 1 22349 9 101 1 5131 0 1324352 species Chryseobacterium gallinarum 2652 0 1265445 Chryseobacterium camelliae species 1 1606 0 558152 Chryseobacterium piperi species 1 1 1685010 0 species Chryseobacterium glaciei 1711 3 6662 0 2593645 no rank Chryseobacterium sp. IHB B 17019 species 1721091 0 1985 1 Chryseobacterium sp. T16E-39 species 0 2015076 2227 1 2450 Chryseobacterium sp. StRB126 species 878220 0 1 1 4486 0 253 Chryseobacterium indologenes species genus 2782228 0 15367 1 15367 536441 0 species Chryseobacterium taklimakanense 1 34084 0 Riemerella genus 1 2497 2 36 1 34085 0 Riemerella anatipestifer species 2461 1013 0 genus 790 1 1 790 species Weeksella virosa 1014 0 genus Elizabethkingia 0 308865 13906 1 49 6 1 0 1756149 Elizabethkingia genomosp. 3 species 1859 1 1117645 0 Elizabethkingia anophelis species 4549 1 species Elizabethkingia meningoseptica 238 0 2291 3304 0 172045 species Elizabethkingia miricola 1 1 0 1756150 Elizabethkingia genomosp. 4 species 1854 1 16837480 200643 0 Bacteroidia class 73 264 11 8 1 11405 0 1970189 order Marinilabiliales 3 12 558415 0 Marinilabiliaceae family 1 2609 2 2 1 2597 1193324 0 Alkalitalea genus 1 species Alkalitalea saponilacus 889453 0 2595 1471398 0 family Prolixibacteraceae 1 4305 3 11 2 39 1 4294 1471399 0 genus Draconibacterium 0 1168034 Draconibacterium orientale species 4255 1 1 2475 family 1573805 0 genus 0 2060722 2475 1 2475 1717717 0 species Marinifilaceae bacterium SPP2 1 8 3 2008 1 family Salinivirgaceae 0 1970190 2 3 1970191 0 genus Salinivirga 1 2000 1997 species Salinivirga cyanobacteriivorans 0 1307839 1 2252 61 order Bacteroidales 0 171549 16825811 1 7 207 0 2005525 Tannerellaceae family 1 1461319 233 3 1430654 1 genus Parabacteroides 0 375288 1 0 823 Parabacteroides distasonis species 524236 906185 no rank 0 2649774 1 1 906185 Parabacteroides sp. CT06 species 2025876 0 1 30458 195950 0 genus Tannerella 3 51 1 10250 2620507 0 no rank 1 10250 Tannerella sp. oral taxon HOT-286 species 0 712710 1 20157 28112 0 species Tannerella forsythia 22 3 254842 1 Barnesiellaceae family 0 2005519 2 125 0 397864 Barnesiella genus 1 254820 254695 0 397865 Barnesiella viscericola species 1 3 1 0 2005523 family Paludibacteraceae 1 4982 2 19 1 4981 0 346096 Paludibacter genus 1 species Paludibacter propionicigenes 185300 0 4962 0 171552 Prevotellaceae family 1 672217 11 106 0 838 genus Prevotella 1 672111 10 1070 1 31877 52227 0 species Prevotella dentalis 468788 28131 0 species Prevotella intermedia 1 1 29111 Prevotella ruminicola species 0 839 0 28129 species Prevotella denticola 26695 1 30361 28132 0 species Prevotella melaninogenica 1 16020 species Prevotella enoeca 0 76123 1 26978 1177574 0 species Prevotella jejuni 1 1 species Prevotella fusca 589436 0 25673 1 no rank 0 2638335 15538 1 15538 652716 0 Prevotella sp. oral taxon 299 species 8785611 no rank 333046 0 5 2 2 0 511434 genus Candidatus Azobacteroides 1 1781 1 0 511435 Candidatus Azobacteroides pseudotrichonymphae species 1779 3 genus 909656 0 8783830 5504186 357276 0 species Bacteroides dorei 1 1 102885 376805 0 species Bacteroides salanitronis 1 3176759 species Bacteroides vulgatus 821 0 3 8 0 1853231 family Odoribacteraceae 1 372551 15 2 372543 1 genus Odoribacter 0 283168 1 species Odoribacter splanchnicus 0 28118 372528 family Dysgonamonadaceae 2005520 0 34345 1 5 7 2 10 1 21055 0 307628 Petrimonas genus 1 21045 species Petrimonas mucosa 1642646 0 2 11 1784836 0 Fermentimonas genus 1 4896 0 1562970 Fermentimonas caenicola species 4885 1 1 8389 0 294702 Proteiniphilum genus 2 53 8336 species Proteiniphilum saccharofermentans 0 1642647 1 78 5 398935 1 Rikenellaceae family 0 171550 239759 0 genus Alistipes 1 394603 2 97 214856 0 species Alistipes finegoldii 394506 1 2 28 1 4254 1611681 0 genus Mucinivorans 1 Mucinivorans hirudinis species 1433126 0 4226 0 815 Bacteroidaceae family 1 4815687 11 106 0 816 Bacteroides genus 1 4815581 10 122767 503815 species Bacteroides ovatus 0 28116 1 1 0 1796613 Bacteroides caecimuris species 378956 1 0 47678 species Bacteroides caccae 222116 1 203046 species Bacteroides zoogleoformans 28119 0 1 419760 246787 0 Bacteroides cellulosilyticus species species Bacteroides thetaiotaomicron 0 818 1673985 1 676336 species Bacteroides fragilis 817 0 1 1 290053 0 Bacteroides helcogenes species 352012 1 Bacteroides heparinolyticus species 28113 0 262788 1 20193 171551 0 family Porphyromonadaceae 4 61 3 44 836 0 genus Porphyromonas 1 20132 1 4012 species Porphyromonas asaccharolytica 28123 0 1 species Porphyromonas gingivalis 0 837 16076 2877 no rank 185291 0 1 1400053 0 species Bacteroidales bacterium CF 2877 1 11054 1 order Bacteroidetes Order II. Incertae sedis 1100069 0 140 7 6 202 563843 0 Rhodothermaceae family 1 10914 31 2 5293 1 genus Rhodothermus 29548 0 5262 Rhodothermus marinus species 29549 0 1 146918 0 genus Salinibacter 1 1815 2 4 1 0 146919 Salinibacter ruber species 1811 1 1196022 0 no rank 3604 species Rhodothermaceae bacterium RA 0 1779382 3604 1 34 24 Sphingobacteriia class 0 117747 34544 1 order Sphingobacteriales 200666 0 34510 1 17 23 34493 1 Sphingobacteriaceae family 0 84566 144 22 423349 0 genus Mucilaginibacter 1 6009 4 48 0 2617802 no rank 2078 1 0 1300914 species Mucilaginibacter sp. PAMC 26640 2078 1 1 1537 Mucilaginibacter sp. BJC16-A31 species 1234841 0 2346 1550579 0 species Mucilaginibacter gotjawali 1 3 2 genus Solitalea 0 929509 2137 1 2134 species Solitalea canadensis 995 0 1 Pseudopedobacter genus 0 1649482 2784 1 4 2 0 151895 Pseudopedobacter saltans species 2780 1 6 100 1 11037 0 28453 genus Sphingobacterium 4 2609468 0 no rank 8950 2003121 0 Sphingobacterium sp. G1-14 species 2664 1 1 Sphingobacterium sp. 21 species 0 743722 2141 1 species Sphingobacterium sp. B29 1933220 0 2813 1 species Sphingobacterium sp. ML3W 0 1538644 1332 1 1987 1010 0 species Sphingobacterium mizutaii 35 6 Pedobacter genus 84567 0 10340 1 1 no rank 0 2628915 1997 1997 0 1727164 species Pedobacter sp. PACM 27299 1 1 2553 984 0 Pedobacter heparinus species 1 1643 0 363852 Pedobacter ginsengisoli species 1 2388 species Pedobacter steynii 430522 0 1 1724 188932 0 Pedobacter cryoconitis species 1 no rank 0 84568 2042 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 1986952 0 2042 1 5 65842 0 phylum 3531 3531 1 Fibrobacteria class 0 204430 1 5 3530 1 Fibrobacterales order 218872 0 4 4 0 204431 family Fibrobacteraceae 1 3526 3 2 13 2 genus Fibrobacter 0 832 3524 1 3511 species Fibrobacter succinogenes 0 833 1 1023 phylum 0 456828 2 1 1023 0 456826 genus Candidatus Cloacimonas 2 3 species Candidatus Cloacimonas acidaminovorans 0 456827 1020 1 0 142182 phylum 8699 8 8 23 1 8699 219685 0 Gemmatimonadetes class 219686 0 Gemmatimonadales order 1 8676 7 191 6 78 1 8485 219687 0 Gemmatimonadaceae family 21 2 Gemmatirosa genus 0 1706036 4280 1 4259 0 861299 Gemmatirosa kalamazoonesis species 1 61 3 Gemmatimonas genus 0 173479 4127 1 Gemmatimonas phototrophica species 1379270 0 2001 1 173480 0 Gemmatimonas aurantiaca species 2065 1 95 61146 clade 0 1783257 17 26 22624 1 phylum Verrucomicrobia 74201 0 6 17 1 6588 203494 0 Verrucomicrobiae class 5 50 1 6571 48461 0 order Verrucomicrobiales 4 45 1 6521 1647988 0 family Akkermansiaceae 12 3 6476 1 genus Akkermansia 0 239934 239935 0 Akkermansia muciniphila species 3536 1 1 2928 Akkermansia glycaniphila species 0 1679444 4348 no rank 0 417295 2 1637999 0 Verrucomicrobia bacterium IMCC26134 species 2241 1 1 0 2026799 Verrucomicrobia bacterium species 2107 10769 1 class Opitutae 0 414999 175 11 3 11 1 962 0 415001 Puniceicoccales order 2 0 415002 family 951 genus Coraliomargarita 442430 0 951 1 37 2 914 395922 0 species Coraliomargarita akajimensis 1 7 234 415000 0 order Opitutales 1 9632 6 76 1 9398 134623 0 Opitutaceae family no rank 0 278955 3660 1 1 3660 794903 0 species Opitutaceae bacterium TAV5 genus Opitutus 178440 0 2706 1 21 2 2685 species Opitutus terrae 0 107709 1 1 2956 0 1961799 genus Lacunisphaera 2 105 1 2851 Lacunisphaera limnophila species 1838286 0 2 287 0 134549 class 2 1 1 287 0 134550 Candidatus Xiphinematobacter genus 0 2648876 no rank 286 1 286 1704307 0 Candidatus Xiphinematobacter sp. Idaho Grape species 1 1 615 0 1955630 Methylacidiphilae class 4 12 1 3 603 1 Methylacidiphilales order 717963 0 2 family 717964 0 602 511745 0 genus 602 2 330 591154 0 Methylacidiphilum fumariolicum species 1 species Methylacidiphilum infernorum 511746 0 272 1 5 1990 0 134625 phylum 1990 1 Kiritimatiellae class 0 1921781 21 5 12 4 Kiritimatiellales order 1921782 0 1969 1 1 1957 1921783 0 family Kiritimatiellaceae 3 17 2 42 0 1921784 genus Kiritimatiella 1 1940 1898 Kiritimatiella glycovorans species 1307763 0 1 Planctomycetes phylum 0 203682 24709 1 19 39 1 4708 0 666505 Phycisphaerae class 7 11 2169 2483366 0 order 2 2 2483367 0 family 2169 2 0 2483368 genus 2169 0 1940790 Phycisphaerae bacterium L21-RPul-D3 species 1051 1 1 1118 0 1941349 species Phycisphaerae bacterium ST-PulAB-D4 Phycisphaerales order 666506 0 2528 1 74 4 3 33 1 2454 0 666507 Phycisphaeraceae family 6 2 genus Phycisphaera 0 666508 2421 1 2415 547188 0 species Phycisphaera mikurensis 1 1056 0 2517206 class 4 1 1056 1127829 0 order Candidatus Brocadiales 4 12 3 6 1 1044 1127830 0 family Candidatus Brocadiaceae genus Candidatus Kuenenia 380738 0 1038 1 2 2 1036 174633 0 species Candidatus Kuenenia stuttgartiensis 1 179 27 Planctomycetia class 203683 0 18926 1 349 10 order Planctomycetales 0 112 9231 1 family Planctomycetaceae 126 0 8882 1 52 9 1936111 0 genus Fuerstia 1 1443 2 8 1435 Fuerstia marisgermanicae species 0 1891926 1 3 68 1 4966 0 118 genus Planctomyces 2 no rank 0 2648843 4898 1 2037 1632864 0 Planctomyces sp. SH-PL14 species 0 1636152 Planctomyces sp. SH-PL62 species 2861 1 1 1147 0 1649480 genus 1147 Planctopirus limnophila species 0 120 1 genus Rubinisphaera 1649490 0 1274 1 4 2 1 Rubinisphaera brasiliensis species 0 119 1270 2691354 0 order 2549 6 2 family 2691358 0 829 1 2 829 1 genus Thermogutta 0 1676125 species Thermogutta terrifontis 0 1331910 828 1 4 2691357 0 family 1720 2 6 0 123 Pirellula genus 1 977 125 0 species Pirellula staleyi 971 1 5 2 Rhodopirellula genus 265488 0 743 1 1 738 0 265606 Rhodopirellula baltica species 7 0 2691356 order 5391 7 36 1 5391 0 1763524 family Isosphaeraceae 18 2 1353 1 Singulisphaera genus 0 466152 1 1335 Singulisphaera acidiphila species 466153 0 2 5 1 2552 0 1763521 Paludisphaera genus 2547 Paludisphaera borealis species 1387353 0 1 1450 1 Isosphaera genus 0 127 9 2 Isosphaera pallida species 128 0 1441 1 3 order 2691355 0 1576 5 3 Gemmataceae family 0 1914233 1576 1 0 113 Gemmata genus 1 1571 2 12 1 1559 no rank 2622970 0 Gemmata sp. SH-PL17 species 1630693 0 1559 1 phylum 204428 0 3601 22 24 22 3601 1 class Chlamydiia 0 204429 5 14 2302 1 Chlamydiales order 0 51291 13 3 0 809 family Chlamydiaceae 1 2297 12 1113537 0 no rank 2294 51 12 Chlamydia genus 810 0 2294 1 1 208 species Chlamydia pneumoniae 0 83558 1 species Chlamydia gallinacea 0 1457153 279 168 83560 0 Chlamydia muridarum species 1 1 85991 0 Chlamydia pecorum species 248 1 Chlamydia trachomatis species 813 0 207 163 0 83556 Chlamydia felis species 1 0 83555 species Chlamydia abortus 205 1 1 species Chlamydia suis 0 83559 61 1 166 species Chlamydia avium 1457141 0 192 Chlamydia caviae species 0 83557 1 346 species Chlamydia psittaci 83554 0 1 7 3 0 1963360 Parachlamydiales order 1 1275 family Parachlamydiaceae 0 92713 619 1 1 3 genus 0 282132 371 1 1 371 0 389348 Candidatus Protochlamydia naegleriophila species 1 genus 0 83551 247 247 Parachlamydia acanthamoebae species 83552 0 1 1 274 0 92712 Simkaniaceae family 2 4 270 34093 0 genus 1 270 Simkania negevensis species 83561 0 1 1 379 family 92714 0 1 0 71666 genus 379 379 71667 0 species Waddlia chondrophila 1 8222 256845 0 phylum 3 3 66 0 1313211 Lentisphaeria class 1 8222 0 278082 order Victivallales 1 8156 2 1999 1 6157 1674876 0 no rank 1 0 2094242 species Victivallales bacterium CCUG 44730 6157 phylum 0 200938 3011 5 3011 1 Chrysiogenetes class 0 118001 16 5 4 34 189769 0 Chrysiogenales order 1 2995 3 14 0 189770 family Chrysiogenaceae 1 2961 41 2 genus Desulfurispirillum 0 393029 2947 1 species Desulfurispirillum indicum 936456 0 2906 1 1783272 0 clade 20637286 1721 0 1297 phylum 67481 36 36 326 0 188787 Deinococci class 1 67481 order Thermales 0 68933 28087 1 420 17 1 27667 188786 0 family Thermaceae 16 129 4212 1 Meiothermus genus 0 65551 20 3 1 1818 species Meiothermus silvanus 52022 0 0 277 Meiothermus ruber species 2374 1 1 17983 0 270 genus Thermus 8 378 0 271 Thermus aquaticus species 3357 1 4481 species Thermus thermophilus 274 0 1 1 no rank 2619321 0 2520 2520 species Thermus sp. CCB_US3_UF1 1111069 0 1 1 1437 Thermus brockianus species 0 56956 1 1743 Thermus scotoductus species 37636 0 1 1781 species Thermus parvatiensis 0 456163 Thermus oshimai species 0 56957 2286 1 2 18 1 1453 0 186191 Marinithermus genus 1 1435 0 186192 Marinithermus hydrothermalis species 2 21 1 3890 0 208447 genus Oceanithermus 0 187137 species Oceanithermus profundus 3869 1 15 443 118964 0 order Deinococcales 1 37232 1 36789 0 183710 family Deinococcaceae 14 266 1 36523 1298 0 genus Deinococcus 13 559 3673 502394 0 species Deinococcus gobiensis 1 species Deinococcus maricopensis 0 309887 2714 1 1761 Deinococcus peraridilitoris species 432329 0 1 2808 0 2623546 no rank 1 1 species Deinococcus sp. NW-56 2080419 0 2808 species Deinococcus geothermalis 68909 0 2249 1 0 1299 species Deinococcus radiodurans 3087 1 1 0 55148 Deinococcus proteolyticus species 3175 1768108 0 species Deinococcus actinosclerus 3221 1 1 2258 0 1182568 Deinococcus puniceus species 1 3476 1309411 0 Deinococcus soli Cha et al. 2016 species 4992 1182571 0 species Deinococcus swuensis 1 Deinococcus deserti species 310783 0 2550 1 1836 2762275 0 order 3 1 1836 332247 0 Trueperaceae family 3 7 9 2 Truepera genus 332248 0 1829 1 1 0 332249 species Truepera radiovictrix 1820 5 1430 phylum 67819 0 4 5 Fimbriimonadia class 0 1663419 1430 1 4 3 1 1426 1663425 0 order Fimbriimonadales 1423 1 family Fimbriimonadaceae 0 1663426 23 3 2 4 0 1005038 Fimbriimonas genus 1 1400 species Fimbriimonas ginsengisoli 0 1005039 1396 1 226 657 2285658 1 Actinobacteria phylum 201174 0 6 18 0 84995 Rubrobacteria class 1 4112 39 5 4094 1 order Rubrobacterales 84996 0 4 34 84997 0 Rubrobacteraceae family 1 4055 72 3 4021 1 Rubrobacter genus 42255 0 Rubrobacter radiotolerans species 0 42256 1174 1 1 0 49319 Rubrobacter xylanophilus species 2775 7 8 0 84992 Acidimicrobiia class 1 2743 84993 0 order Acidimicrobiales 1 2735 6 66 2448023 0 family 1740 2 2 14 1 1740 682522 0 Ilumatobacter genus 1 1726 0 467094 species Ilumatobacter coccineus 1 929 84994 0 Acidimicrobiaceae family 3 29 0 53634 Acidimicrobium genus 1 900 2 5 895 53635 0 Acidimicrobium ferrooxidans species 1 84998 0 Coriobacteriia class 1 750610 33 1576 1273 18 Eggerthellales order 0 1643822 131909 1 Eggerthellaceae family 1643826 0 130636 1 18789 17 134 3 genus Gordonibacter 0 644652 33104 1 1 species Gordonibacter massiliensis 1841863 0 13449 species Gordonibacter urolithinfaciens 1335613 0 19521 1 1 15686 84108 0 Slackia genus 2 39 1 15647 0 84110 species Slackia heliotrinireducens 5 2 13730 1 Adlercreutzia genus 0 447020 species Adlercreutzia equolifaciens 446660 0 13725 1 1 1334 0 84162 genus Cryptobacterium 2 4 1 0 84163 Cryptobacterium curtum species 1330 79603 0 Denitrobacterium genus 1 6440 2 10 6430 79604 0 Denitrobacterium detoxificans species 1 2 1 1 1488 0 1981050 Phoenicibacter genus 1487 0 1944646 species Phoenicibacter massiliensis 1 84111 0 genus Eggerthella 1 40065 3 136 species Eggerthella lenta 0 84112 33695 1 1 0 2648737 no rank 6234 6234 502558 0 species Eggerthella sp. YY7918 1 order Coriobacteriales 0 84999 617125 1 622 14 6 2421 1 582987 0 84107 Coriobacteriaceae family 1 4289 0 33870 genus Coriobacterium 2 16 1 33871 0 Coriobacterium glomerans species 4273 6834 0 84113 no rank 1 6834 species Coriobacteriaceae bacterium 68-1-3 1531429 0 1 569443 1 Collinsella genus 0 102106 97 2 569346 species Collinsella aerofaciens 74426 0 1 Atopobiaceae family 0 1643824 33516 1 657 7 1 6 Atopobium genus 0 1380 1 genus 0 2767353 2280 2280 Atopobium parvulum species 0 1382 1 263 4 genus Olsenella 0 133925 30573 1 16682 species Olsenella sp. Marseille-P2300 0 1805478 1 1 133926 0 Olsenella uli species 8688 4940 2638792 0 no rank 1 4940 712411 0 species Olsenella sp. oral taxon 807 1 1 3576 0 1497346 Thermoleophilia class 5 12 588673 0 Solirubrobacterales order 1 3564 4 129 54 3 3435 1 Conexibacteraceae family 0 320583 Conexibacter genus 0 191494 3381 1 90 2 1 191495 0 species Conexibacter woesei 3291 932 0 1752188 no rank 4 1 307 species Actinobacteria bacterium IMCC25003 1848255 0 1 1848756 0 Actinobacteria bacterium IMCC26103 species 249 1 1848755 0 Actinobacteria bacterium IMCC26077 species 224 152 1848754 0 species Actinobacteria bacterium IMCC19121 1 1523459 1 Actinobacteria class 1760 0 13536 601 2 1643818 0 no rank 2010 2 18 147067 0 genus Thermobispora 1 2010 0 2006 species Thermobispora bispora 1992 1 Streptomycetales order 85011 0 265041 1 511 82 81 1827 2062 0 family Streptomycetaceae 1 264530 1 15980 2063 0 genus Kitasatospora 5 209 1 4191 species Kitasatospora setae 2066 0 0 1894 species Kitasatospora aureofaciens 3764 1 no rank 0 2633591 4318 1 4318 2018025 0 Kitasatospora sp. MMS16-BH015 species 1 1 68173 0 species Kitasatospora albolonga 3498 1 246723 0 1883 genus Streptomyces 75 8856 0 629295 species group 5160 2 1482596 0 species subgroup 2771 1 2771 1911 0 species Streptomyces griseus 1 2389 0 1482558 species subgroup 1 1908 0 species Streptomyces globisporus 2389 1 1 1901 0 Streptomyces clavuligerus species 3033 species Streptomyces sp. XZHG99 0 2049881 2318 1 0 1940 Streptomyces albireticuli species 2909 1 1 Streptomyces xiamenensis species 408015 0 3151 Streptomyces scabiei species 0 1930 3340 1 0 193462 Streptomyces niveus species 2208 1 4870 54571 0 Streptomyces venezuelae species 1 1 2002 0 68202 Streptomyces fulvissimus species 1 Streptomyces hygroscopicus species 0 1912 8024 2828 species Streptomyces autolyticus 0 75293 1 3206 species Streptomyces violaceusniger 0 68280 1 Streptomyces xinghaiensis species 1038928 0 3048 1 2418 Streptomyces pluripotens species 1355015 0 1 1 species Streptomyces ambofaciens 0 1889 2635 1 2317 Streptomyces pratensis species 0 1169025 2611 0 146923 species Streptomyces parvulus 1 1 Streptomyces collinus species 42684 0 3079 2 6095 species group 0 1477431 0 1902 species Streptomyces coelicolor 2918 1 species Streptomyces sampsonii 0 42239 3177 1 1 3699 species Streptomyces puniciscabiei 0 164348 1 68570 0 species Streptomyces albulus 3193 3320 1915 0 Streptomyces lincolnensis species 1 1 2857 0 1616117 Streptomyces formicae species 3304 Streptomyces malaysiensis species 0 92644 1 3085 Streptomyces pristinaespiralis species 0 38300 1 2869 1783515 0 species Streptomyces sp. S10(2016) 1 3768 29303 0 species Streptomyces cattleya 1 2958 species Streptomyces cyaneogriseus 0 68192 1 1 3067 0 1971 species Streptomyces noursei 1 0 47763 species Streptomyces lydicus 8372 1 2599 0 285473 species Streptomyces rubrolavendulae 1 species Streptomyces lividans 1916 0 2965 1 3538 1642299 0 species Streptomyces alfalfae 1 Streptomyces pactum species 0 68249 5639 1 2248 0 1935 species Streptomyces violaceoruber 1 3778 0 1969 Streptomyces chartreusis species 1 species Streptomyces griseochromogenes 0 68214 3856 Streptomyces bingchenggensis species 379067 0 4437 1 1 2836 Streptomyces lavendulae species 1914 0 species Streptomyces leeuwenhoekii 1437453 0 3185 1 1 Streptomyces alboflavus species 67267 0 2957 3445 species Streptomyces vietnamensis 0 362257 1 69561 2593676 0 no rank 24 1 Streptomyces sp. P3 species 0 2135430 2788 1495638 0 Streptomyces sp. M56 species 3648 1 1 3150 1812480 0 species Streptomyces sp. fd1-xmd 0 2094021 Streptomyces sp. WAC00288 species 2407 1 1 species Streptomyces sp. Tue 6075 1661694 0 2564 1 1561022 0 Streptomyces sp. CCM_MD2014 species 2919 species Streptomyces sp. 4F 0 1751294 3019 1 1 3271 2059884 0 Streptomyces sp. CMB-StM0423 species 1 3049 Streptomyces sp. CNQ-509 species 444103 0 0 1265601 species Streptomyces sp. PAMC 26508 2272 1 0 465541 Streptomyces sp. Mg1 species 2645 1 2693 Streptomyces sp. Sge12 species 0 1972846 1 1 2648 862751 0 Streptomyces sp. SirexAA-E species 3074 0 1961713 Streptomyces sp. MOE7 species 1 3678 1725411 0 species Streptomyces sp. CdTB01 1 1 3418 1841249 0 species Streptomyces sp. RTd22 2470 Streptomyces sp. 3211 species 0 1964449 1 1 Streptomyces sp. CFMR 7 species 1649184 0 2743 0 1262452 Streptomyces sp. 769 species 3465 1 3195 206662 0 species Streptomyces sp. FR-008 1 0 234612 Streptomyces sp. TN58 species 2404 1 0 1837283 species Streptomyces sp. S8 2547 1 1 0 1984801 species Streptomyces sp. CLI2509 2365 3129 species Streptomyces sp. SAT1 0 1849967 1 1 species Streptomyces avermitilis 0 33903 2728 species Streptomyces glaucescens 1907 0 3061 1 6504 0 1888 Streptomyces albus species 1 3027 553510 0 species Streptomyces gilvosporeus 1 1 2693 species Streptomyces peucetius 0 1950 1 1926 0 Streptomyces reticuli species 3066 3 order 0 1643683 731 3 8 1 731 0 85032 family Acidothermaceae 723 1 genus Acidothermus 0 28048 21 2 1 0 28049 species Acidothermus cellulolyticus 702 85013 0 Frankiales order 1 10700 7 36 6 181 1 10664 0 74712 Frankiaceae family 1 10483 1854 0 genus Frankia 5 274 1 2409 0 1859 species Frankia alni 1 1452 0 106370 species Frankia casuarinae 1 298654 0 species Frankia inefficax 3667 1 2632575 0 no rank 2681 species Frankia sp. EAN1pec 298653 0 2681 1 0 52018 no rank 311 1 1 311 species Actinobacteria bacterium IMCC26256 1650658 0 246477 1 order Corynebacteriales 0 85007 1975 163 1 1490 316606 0 family Segniliparaceae 3 8 286801 0 genus Segniliparus 1 1482 2 17 286802 0 species Segniliparus rotundus 1465 1 85025 0 Nocardiaceae family 1 59471 31 527 1287 23 36672 1 Rhodococcus genus 0 1827 1904 132919 0 species Rhodococcus jostii 1 12 15636 no rank 192944 0 1 1446 Rhodococcus sp. B7740 species 0 1564114 1234 species Rhodococcus sp. p52 0 935199 1 1307 0 1653479 species Rhodococcus sp. PBTS 2 1 1 1281 0 1045808 Rhodococcus sp. YL-1 species 1 1473 1653478 0 Rhodococcus sp. PBTS 1 species 1723645 0 species Rhodococcus sp. 008 859 1 1332 species Rhodococcus sp. H-CA8f 0 1727214 1 1 875 Rhodococcus sp. WMMA185 species 0 679318 1 1453 1805827 0 species Rhodococcus sp. MTM3W5.2 841 0 1807790 species Rhodococcus sp. BH4 1 1359 1570939 0 species Rhodococcus sp. 2G 1 species Rhodococcus sp. WB1 1033922 0 2176 1 1 4286 37919 0 Rhodococcus opacus species 1 2556 1830 0 species Rhodococcus ruber 1 1601 Rhodococcus pyridinivorans species 0 103816 1 1532 species Rhodococcus fascians 0 1828 1 0 191292 Rhodococcus aetherivorans species 2223 1 species Rhodococcus rhodochrous 0 1829 1136 species Rhodococcus qingshengii 334542 0 897 1 1 1769 1833 0 species Rhodococcus erythropolis species Rhodococcus hoagii 0 43767 1845 1 7 462 0 1817 Nocardia genus 1 22272 1 3328 species Nocardia farcinica 0 37329 0 135487 Nocardia cyriacigeorgica species 5072 1 1 0 37330 Nocardia nova species 2027 1 37326 0 Nocardia brasiliensis species 4836 1 3112 Nocardia terpenica species 455432 0 3435 0 37332 Nocardia seriolae species 1 2784 1 Dietziaceae family 0 85029 32 4 73 3 2752 1 genus Dietzia 0 37914 1285 0 2617939 no rank 1 1 species Dietzia sp. oral taxon 368 0 712270 1285 1394 499555 0 Dietzia timorensis species 1 339 57 family Mycobacteriaceae 0 1762 91436 1 3656 34 genus Mycobacterium 1763 0 52960 1 1107 29311 0 Mycobacterium haemophilum species 1 1857 0 482462 species Mycobacterium dioxanotrophicus 1 0 1781 Mycobacterium marinum species 1801 1 1 species group 0 2249310 1330 1 1330 species Mycobacterium shigaense 722731 0 1 1687 Mycobacterium kansasii species 0 1768 species Mycobacterium liflandii 0 261524 1333 1 13 2642494 0 no rank 22167 1664 species Mycobacterium sp. KMS 0 189918 1 0 1682113 Mycobacterium sp. YC-RL4 species 1597 1 1 1861 Mycobacterium sp. PYR15 species 0 2051552 674 0 1168287 species Mycobacterium sp. MOTT36Y 1 3015 species Mycobacterium sp. djl-10 1879023 0 1 1474 species Mycobacterium sp. JLS 0 164757 1 0 1561223 Mycobacterium sp. QIA-37 species 1255 1 1710 Mycobacterium sp. NRRL B-3805 species 0 1570328 1 1 1715 0 212767 Mycobacterium sp. JS623 species 1 species Mycobacterium sp. VKM Ac-1817D 0 1273687 2076 Mycobacterium sp. EPa45 species 1545728 0 1991 1 0 164756 species Mycobacterium sp. MCS 1585 1 1 Mycobacterium sp. WY10 species 1920667 0 1550 120793 0 species group 11698 8 Mycobacterium paraintracellulare species 0 1138383 707 1 1 1260 0 701042 Mycobacterium marseillense species 1 3614 species Mycobacterium avium 1764 0 1150 4 4223 1 Mycobacterium intracellulare species 1767 0 35617 0 Mycobacterium indicus pranii subspecies 578 1 1662 subspecies Mycobacterium chimaera 222805 0 1 1203599 0 subspecies Mycobacterium yongonense 833 1 1894 0 339268 Mycobacterium colombiense species 1 4 species group 77643 0 3948 0 78331 Mycobacterium canettii species 933 1 1068 3 3015 1 species Mycobacterium tuberculosis 1773 0 971 biotype Mycobacterium africanum 33894 0 1 1 976 0 1765 biotype Mycobacterium bovis 1 0 1809 Mycobacterium ulcerans species 1611 species Mycobacterium leprae 0 1769 765 1 2 3488 genus 1073531 0 1613 Mycobacterium terrae species 0 1788 1 1 1875 Mycobacterium sinense species 0 875328 genus Hoyosella 0 697025 819 1 3 2 639313 0 Hoyosella subflava species 816 1 7800 0 670516 genus 5 1389 1578165 0 species Mycobacterium saopaulense 1 1118 1520670 0 species Mycobacterium stephanolepidis 1 1020 1774 0 Mycobacterium chelonae species 1 1692 Mycobacterium immunogenum species 0 83262 1 1 2581 Mycobacterium abscessus species 36809 0 26030 genus 1866885 0 13 1 Mycobacterium fortuitum species 1766 0 2105 1 species Mycobacterium thermoresistibile 1797 0 1477 1710 1795 0 species Mycobacterium neoaurum 1 2284 1800 0 species Mycobacterium chubuense 1 1 2353 Mycobacterium goodii species 134601 0 1 1438 36814 0 Mycobacterium rhodesiae species 2330 species Mycobacterium smegmatis 0 1772 1 1 2374 1791 0 Mycobacterium aurum species 2309 Mycobacterium vaccae species 1810 0 1 1 1825 1771 0 species Mycobacterium phlei 2348 758802 0 species Mycobacterium litorale 1 1 1611 species Mycobacterium gilvum 1804 0 Mycobacterium vanbaalenii species 110539 0 1866 1 2 731 no rank 0 697024 Lawsonella genus 1847725 0 731 1 40 2 1528099 0 Lawsonella clevelandensis species 691 1 Corynebacteriaceae family 0 1653 74238 1 556 52 1716 0 Corynebacterium genus 1 73682 51 1816 1 Corynebacterium lactis species 0 1231000 1136 1 1231 0 401472 Corynebacterium ureicelerivorans species 1 1223514 0 Corynebacterium humireducens species 2550 species Corynebacterium imitans 0 156978 1726 1 1 2644 38305 0 Corynebacterium vitaeruminis species 1 1657 0 575200 Corynebacterium maris species 1 1147 1717 0 Corynebacterium diphtheriae species 1243 0 89154 species Corynebacterium terpenotabidum 1 1 0 160386 species Corynebacterium casei 937 690 species Corynebacterium mustelae 0 571915 1 1 0 35755 species Corynebacterium kutscheri 412 1 161896 0 Corynebacterium camporealensis species 1326 1 0 1727 Corynebacterium variabile species 2057 1 43771 0 Corynebacterium urealyticum species 1770 1759 0 1718 Corynebacterium glutamicum species 1 1 991 1050174 0 species Corynebacterium epidermidicanis Corynebacterium pseudotuberculosis species 1719 0 786 1 707 Corynebacterium argentoratense species 0 42817 1 203263 0 species Corynebacterium aquilae 1337 1 species Corynebacterium glyciniphilum 0 1404244 1231 1 1 Corynebacterium deserti species 0 1408191 1001 1 1244 Corynebacterium phocae species 161895 0 Corynebacterium kroppenstedtii species 0 161879 562 1 1 1997 species Corynebacterium falsenii 0 108486 1 349751 0 Corynebacterium marinum species 2267 959 0 65058 species Corynebacterium ulcerans 1 1 152794 0 species Corynebacterium efficiens 1869 1 1210 Corynebacterium stationis species 0 1705 1 Corynebacterium sphenisci species 191493 0 3088 Corynebacterium testudinoris species 0 136857 1452 1 2 1879 2624378 0 no rank 1007 702967 0 Corynebacterium sp. NML98-0116 species 1 1 species Corynebacterium sp. ATCC 6931 1487956 0 872 984 28028 0 species Corynebacterium flavescens 1 1 1507 species Corynebacterium simulans 0 146827 1 2018 1072256 0 Corynebacterium uterequi species 853 0 35757 species Corynebacterium cystitidis 1 1 767 species Corynebacterium atypicum 191610 0 1417 0 169292 species Corynebacterium aurimucosum 1 1 258224 0 Corynebacterium resistens species 678 Corynebacterium singulare species 0 161899 1219 1 1 3264 species Corynebacterium striatum 0 43770 1 Corynebacterium jeikeium species 0 38289 2683 0 187491 Corynebacterium glaucum species 1308 1 1721 0 species Corynebacterium callunae 836 1 1 1697 0 species Corynebacterium ammoniagenes 1112 1 2258 225326 0 species Corynebacterium halotolerans 1 870 92706 0 species [Brevibacterium] flavum 1 species Corynebacterium frankenforstense 1230998 0 2416 1 species Corynebacterium doosanense 0 1121358 1843 1 Corynebacterium crudilactis species 1652495 0 968 9 140 85026 0 Gordoniaceae family 1 10880 340 8 Gordonia genus 0 2053 10740 1 1 0 84595 species Gordonia polyisoprenivorans 1466 1 2054 0 species Gordonia bronchialis 1271 1 Gordonia phthalatica species 0 1136941 1535 2815 0 2657482 no rank 2 1 1525 337191 0 Gordonia sp. KTR9 species 0 2059875 species Gordonia sp. YC-JH1 1290 1 0 1004901 species Gordonia iterans 1662 1 1 0 2055 species Gordonia terrae 1651 3472 1 family Tsukamurellaceae 85028 0 17 4 1 3455 0 2060 Tsukamurella genus 3 43 1 1392 2061 0 Tsukamurella paurometabola species 2020 0 57704 species Tsukamurella tyrosinosolvens 1 192 16 Streptosporangiales order 0 85012 28881 1 5 151 2004 0 family Streptosporangiaceae 1 12285 2 69 1 6593 0 83681 genus Nonomuraea 6524 no rank 0 2593643 1 6524 species Nonomuraea sp. ATCC 55076 0 1909395 1 2 75 1 5541 2000 0 Streptosporangium genus 2001 0 species Streptosporangium roseum 5466 1 1 4582 0 2012 Thermomonosporaceae family 3 60 0 2019 genus Thermomonospora 1 4522 2 74 4448 2020 0 species Thermomonospora curvata 1 1 11822 83676 0 family Nocardiopsaceae 7 269 126 4 genus Nocardiopsis 2013 0 9779 1 2651 species Nocardiopsis alba 53437 0 1 1 0 280236 species Nocardiopsis gilva 2358 4644 0 2014 species Nocardiopsis dassonvillei 1 21 2 Thermobifida genus 0 83677 1774 1 2021 0 species Thermobifida fusca 1753 1 1 530904 85004 0 Bifidobacteriales order 27 560 530344 1 family Bifidobacteriaceae 31953 0 17511 26 0 196081 genus Scardovia 1 903 2 7 1 78259 0 Scardovia inopinata species 896 3908 1 genus Gardnerella 0 2701 1 2 2702 0 Gardnerella vaginalis species 3907 1 196082 0 Parascardovia genus 1 2764 2 6 1 78258 0 Parascardovia denticolens species 2758 505258 1 Bifidobacterium genus 0 1678 4483 19 2680 species Bifidobacterium asteroides 1684 0 1 0 1686 Bifidobacterium catenulatum species 1 224494 2 66093 1 subspecies Bifidobacterium kashiwanohense 630129 0 158401 28025 0 Bifidobacterium animalis species 3174 1 1 Bifidobacterium actinocoloniiforme species 0 638619 1828 1 6593 158787 0 species Bifidobacterium scardovii 28026 0 species Bifidobacterium pseudocatenulatum 71713 1 2417 0 33905 species Bifidobacterium thermophilum 1 1573 species Bifidobacterium coryneforme 0 1687 1 1 3896 Bifidobacterium choerinum species 35760 0 0 1689 species Bifidobacterium dentium 4530 1 0 1683 Bifidobacterium angulatum species 7714 1 1 species Bifidobacterium longum 216816 0 68177 species Bifidobacterium pseudolongum 1694 0 4093 1 0 1680 species Bifidobacterium adolescentis 16910 1 1 34722 species Bifidobacterium bifidum 0 1681 1686 species Bifidobacterium indicum 1691 0 1 1 44575 species Bifidobacterium breve 0 1685 201 34 order Propionibacteriales 0 85009 50609 1 1 31818 0 31957 Propionibacteriaceae family 20 375 3581 1 genus Acidipropionibacterium 1912215 0 3 2 3578 1748 0 Acidipropionibacterium acidipropionici species 1 3 41 1743 0 genus Propionibacterium 1 7587 2608905 0 no rank 727 1 1 727 0 671223 Propionibacterium sp. oral taxon 193 species 1 6819 species Propionibacterium freudenreichii 0 1744 0 72763 genus Tessaracoccus 1 9010 5 85 1 2810 no rank 2635419 0 1 0 1909732 Tessaracoccus sp. T2.5-30 species 2810 1 Tessaracoccus aquimaris species 1332264 0 2163 species Tessaracoccus flavus 1610493 0 1742 1 1 Tessaracoccus flavescens species 399497 0 2210 33 4 5347 1 Cutibacterium genus 1912216 0 1 species Cutibacterium acnes 0 1747 1521 1 2183 species Cutibacterium avidum 33010 0 1 1610 33011 0 species Cutibacterium granulosum 1614 1 genus Microlunatus 29404 0 47 2 29405 0 Microlunatus phosphovorus species 1567 1 2251 1 genus Propionimicrobium 0 203133 3 2 0 2633994 no rank 2248 1 2248 1871034 0 species Propionimicrobium sp. Marseille-P3275 1 genus 0 2801844 2053 1 2053 species Pseudopropionibacterium propionicum 1750 0 1 85015 0 family Nocardioidaceae 1 18590 13 349 1 2745 0 2044 Pimelobacter genus 2 44 1 species Pimelobacter simplex 2045 0 2701 4 121 1 8147 1839 0 genus Nocardioides 1 0 2615069 no rank 3069 1 3069 0 196162 Nocardioides sp. JS614 species 0 2045452 Nocardioides sp. 78 species 2339 1 450734 0 species Nocardioides dokdonensis 2618 1 0 2040 genus Aeromicrobium 1 1810 2 37 1773 2041 0 Aeromicrobium erythreum species 1 2417 1 Micropruina genus 0 116071 7 2 1 Micropruina glycogenica species 75385 0 2410 48 2 genus Kribbella 182639 0 3122 1 1 3074 182640 0 species Kribbella flavida 11 4 Glycomycetales order 0 85014 3089 1 3 70 1 3078 0 85034 family Glycomycetaceae 3008 1 genus Stackebrandtia 283810 0 56 2 1 2952 Stackebrandtia nassauensis species 283811 0 19 69 0 2037 Actinomycetales order 1 39572 family Actinomycetaceae 0 2049 39503 1 9596 18 genus Trueperella 1069494 0 2747 1 23 2 2724 0 1661 species Trueperella pyogenes 1 2 1 28263 0 genus Arcanobacterium 1 516 1 515 28264 0 Arcanobacterium haemolyticum species 0 2529408 genus 2211 1 species Actinomyces meyeri 0 52773 2211 1 2 324 1 4672 0 2050 Mobiluncus genus 1 4348 0 2051 species Mobiluncus curtisii 1219 0 1653174 genus 1 1 59505 0 Actinotignum schaalii species 1219 genus Actinomyces 1654 0 18542 1 529 9 2609248 0 no rank 8595 3 1 3036 0 712122 species Actinomyces sp. oral taxon 414 3087 species Actinomyces sp. oral taxon 897 2081702 0 1 1 2472 0 1851395 species Actinomyces sp. Chiba101 1 1960083 0 Actinomyces gaoshouyii species 1821 1 1852377 0 species Actinomyces pacaensis 2410 species Actinomyces sp. VUL4_3 0 1912795 416 1 544580 0 species Actinomyces oris 2574 1 1 Actinomyces radicidentis species 111015 0 2197 1 3346 2039638 0 Candidatus Nanopelagicales order 12 7 11 3339 family 2162846 0 1 734 0 2039639 genus Candidatus Nanopelagicus 4 8 0 1884634 Candidatus Nanopelagicus limnes species 287 1 species Candidatus Nanopelagicus abundans 0 1884916 267 1 1 0 1884915 Candidatus Nanopelagicus hibericus species 172 Candidatus Planktophila genus 0 622681 2605 1 27 7 0 1884905 Candidatus Planktophila versatilis species 683 1 219 species Candidatus Planktophila limnetica 0 573600 1 1 species Candidatus Planktophila sulfonica 1884904 0 353 214 Candidatus Planktophila vernalis species 1884907 0 1 Candidatus Planktophila dulcis species 1884914 0 484 1 Candidatus Planktophila lacus species 0 1884913 625 1 20 130 1 46920 0 85008 order Micromonosporales 19 607 1 46790 0 28056 family Micromonosporaceae 1 27 Verrucosispora genus 84593 0 1865 0 Actinoplanes genus 1 18403 6 252 11202 no rank 2626549 0 3 1 species Actinoplanes sp. SE50/110 134676 0 3661 1 3662 Actinoplanes sp. SE50 species 0 2033844 1 3879 0 649831 Actinoplanes sp. N902-109 species species Actinoplanes friuliensis 0 196914 3502 1 3447 0 1866 species Actinoplanes missouriensis 1 4 255 0 673534 Plantactinospora genus 1 11187 3 no rank 2631981 0 10932 1 3693 species Plantactinospora sp. BB1 2071627 0 0 2024580 Plantactinospora sp. KBS50 species 3541 1 3698 0 2108470 species Plantactinospora sp. BC1 1 4 198 1 11716 1873 0 genus Micromonospora 2617518 0 no rank 4132 1 0 648999 Micromonospora sp. L5 species 4132 1 1 species Verrucosispora maris 0 1003110 3348 Micromonospora aurantiaca species 0 47850 4038 1 24 3 genus Salinispora 0 168694 4850 1 1 species Salinispora arenicola 0 168697 2554 0 168695 Salinispora tropica species 2272 1 3 0 622452 order 2685 1 2685 0 83778 Kineosporiaceae family 3 35 1 2650 33981 0 genus Kineococcus 2 21 2629 Kineococcus radiotolerans species 0 131568 1 14 8 Geodermatophilales order 1643682 0 8575 1 205 7 family Geodermatophilaceae 85030 0 8561 1 3373 1 genus Modestobacter 0 88138 40 2 3333 477641 0 Modestobacter marinus species 1 genus Geodermatophilus 0 1860 2872 1 65 2 Geodermatophilus obscurus species 1861 0 2807 1 0 38501 Blastococcus genus 1 2111 2 12 1 0 138336 species Blastococcus saxobsidens 2099 145 1876 1 174901 85006 0 order Micrococcales 1 7712 85016 0 Cellulomonadaceae family 6 62 1 7650 1707 0 genus Cellulomonas 5 252 1 no rank 0 2620175 1838 1 2003551 0 species Cellulomonas sp. PSBB021 1838 1 2146 Cellulomonas fimi species 0 1708 0 1711 species Cellulomonas flavigena 1974 1 1 species Cellulomonas gilvus 11 0 1440 39 3120 1 65102 1268 0 family Micrococcaceae 1 7290 57493 0 Kocuria genus 4 139 species Kocuria flava 0 446860 2508 1 Kocuria palustris species 71999 0 2079 1 0 72000 species Kocuria rhizophila 2564 1 29 2 Sinomonas genus 0 596707 2339 1 Sinomonas atrocyanea species 0 37927 2310 1 0 32207 Rothia genus 1 4077 3 12 Rothia dentocariosa species 2047 0 765 1 1 species Rothia mucilaginosa 43675 0 3300 456 genus 1645 0 1 456 0 1646 Renibacterium salmoninarum species 1 2634 1 genus Glutamicibacter 0 1742989 9 2 1 256701 0 Glutamicibacter arilaitensis species 2625 15 609 1 31909 1663 0 genus Arthrobacter 2428 0 37928 Arthrobacter crystallopoietes species 1 2964 656366 0 species Arthrobacter alpinus 1 12 235627 0 no rank 25908 1 species Arthrobacter sp. ZXY-2 0 1806905 1784 1 1239 species Arthrobacter sp. Rue61a 1118963 0 1 Arthrobacter sp. PGP41 species 0 2079227 2032 1 species Arthrobacter sp. PAMC 25486 0 1494608 1827 1 2203 1849032 0 Arthrobacter sp. U41 species 1 1357915 0 species Arthrobacter sp. QXT-31 2454 1 species Arthrobacter sp. LS16 0 1690248 3041 1704044 0 species Arthrobacter sp. ERGS1:01 2796 1 1 Arthrobacter sp. FB24 species 0 290399 2224 0 1771959 Arthrobacter sp. ATCC 21022 species 1540 1 1862 0 2020486 species Arthrobacter sp. YN 1 0 1652545 species Arthrobacter sp. YC-RL1 2906 1 0 1742993 Pseudarthrobacter genus 1 7152 4 61 1 species Pseudarthrobacter sulfonivorans 121292 0 2471 2555 0 85085 Pseudarthrobacter chlorophenolicus species 1 species Pseudarthrobacter phenanthrenivorans 361575 0 2065 1 1003 1 genus Neomicrococcus 1868332 0 18 2 species Neomicrococcus aestuarii 556325 0 985 1 2 103 0 1269 Micrococcus genus 1 2637 1 species Micrococcus luteus 0 1270 2534 1 genus 2078575 0 975 Arthrobacter sp. IHBB 11108 species 1618207 0 975 1 3 2 genus Paenarthrobacter 0 1742992 1510 1 1 43663 0 Paenarthrobacter aurescens species 1507 85018 0 Dermatophilaceae family 1 691 3 3 5 2 genus Dermatophilus 0 1862 688 1 species Dermatophilus congolensis 0 1863 683 1 53412 1 Microbacteriaceae family 0 85023 624 48 0 1573 Clavibacter genus 1 7483 6 374 5 1223 1 7109 28447 0 species Clavibacter michiganensis 0 33014 subspecies Clavibacter insidiosus 1538 1 1726 31964 0 subspecies Clavibacter sepedonicus 1 Clavibacter capsici subspecies 1874630 0 1392 1 1 0 31963 subspecies Clavibacter nebraskensis 1230 2 4 1 1525 0 1759331 Cnuibacter genus Cnuibacter physcomitrellae species 1619308 0 1521 1 507 14 21223 1 Microbacterium genus 0 33882 1351 0 2033 Microbacterium testaceum species 1 1520 Microbacterium hominis species 0 162426 1 8 12745 0 2609290 no rank 1 1696072 0 Microbacterium sp. CGR1 species 1318 1714373 0 Microbacterium sp. No. 7 species 1755 1 species Microbacterium sp. 1.5R 0 1916917 1263 1 1 1828 species Microbacterium sp. PAMC 28756 0 1795053 1946 2103230 0 Microbacterium sp. str. 'China' species 1 1445 1938334 0 Microbacterium sp. TPU 3598 species 1 1 1906742 0 species Microbacterium sp. BH-3-3-3 1419 Microbacterium sp. XT11 species 367477 0 1771 1 1 1402 84292 0 Microbacterium chocolatum species 1 36805 0 Microbacterium aurum species 2180 1 300019 0 species Microbacterium paludicola 1518 2 3 1 1163 0 337004 Microcella genus 1160 0 279828 species Microcella alkaliphila 1 4518 1 Curtobacterium genus 0 2034 110 4 1915 0 69373 Curtobacterium pusillum species 1 2493 257496 0 no rank 2 1561023 0 Curtobacterium sp. MR_MD2014 species 1202 1 1 Curtobacterium sp. BH-2-1-1 species 0 1905847 1291 4324 1 genus Cryobacterium 69578 0 85 3 no rank 0 2649013 2093 1 1 2093 species Cryobacterium sp. LW097 0 1978566 1 2146 Cryobacterium arcticum species 670052 0 2 55 1 4319 110932 0 Leifsonia genus 1 4264 Leifsonia xyli species 0 1575 1417 genus 0 447237 1 1 1417 no rank 0 2626248 1 1417 1795630 0 species Frondihabitans sp. PAMC 28766 1665 1 genus Microterricola 518733 0 7 2 1 0 412690 species Microterricola viridarii 1658 genus Aurantimicrobium 0 1705353 579 1 5 2 574 Aurantimicrobium minutum species 0 708131 1 1844 1 genus Rathayibacter 33886 0 13 3 0 33888 species Rathayibacter tritici 1320 1 511 species Rathayibacter toxicus 145458 0 1 3 no rank 1655488 0 598 clade 1655489 0 598 3 2 3 genus Rhodoluna 529883 0 598 1 1 245 species Rhodoluna lacicola 529884 0 Candidatus Rhodoluna planktonica species 0 535712 351 1 1 1688 0 33877 Agromyces genus 2 19 1669 species Agromyces aureus 0 453304 1 1 genus 1434032 0 442 1 1159327 0 Pontimonas salivibrio species 442 Dermacoccaceae family 0 145357 4895 1 46 7 33 2 genus Luteipulveratus 745364 0 1611 1 1 571913 0 Luteipulveratus mongoliensis species 1578 49 2 2112 1 genus Kytococcus 0 57499 1 2063 0 1276 Kytococcus sedentarius species 2 16 0 57495 genus Dermacoccus 1 1126 1274 0 species Dermacoccus nishinomiyaensis 1110 1 10 75 0 85020 family Dermabacteraceae 1 14692 260 6 12622 1 genus Brachybacterium 43668 0 1 Brachybacterium sp. VM2412 species 2017484 0 2312 Brachybacterium sp. VR2415 species 2017485 0 1987 1 2240 43669 0 species Brachybacterium faecium 1 3167 no rank 0 2623841 1 1 species Brachybacterium sp. P6-10-X1 1903186 0 3167 1 Brachybacterium ginsengisoli species 0 1331682 2656 1 0 36739 genus 1185 1185 Dermabacter vaginalis species 0 1630135 1 2 8 1 810 472568 0 genus Devriesea 1 Devriesea agamarum species 472569 0 802 1 1895 0 125316 family Beutenbergiaceae 3 1 1 1894 0 84756 genus Beutenbergia 2 24 Beutenbergia cavernae species 0 84757 1870 1 9 3 944 1 Jonesiaceae family 0 85022 38 2 Jonesia genus 43673 0 935 1 897 species Jonesia denitrificans 43674 0 1 86 9 family Promicromonosporaceae 0 85017 9871 1 2164 1 Xylanimonas genus 186188 0 19 2 species Xylanimonas cellulosilytica 0 186189 2145 1 66 3 3797 1 Cellulosimicrobium genus 157920 0 Cellulosimicrobium cellulans species 1710 0 1858 1 1873 no rank 0 2624466 1 0 1980001 Cellulosimicrobium sp. TH-20 species 1873 1 1 3824 0 254250 Isoptericola genus 3 71 Isoptericola dokdonensis species 372663 0 1864 1 1 139208 0 species Isoptericola variabilis 1889 1 89 no rank 0 577468 1 2038 0 genus 89 1 89 species Tropheryma whipplei 2039 0 0 85019 family Brevibacteriaceae 1 3088 3 42 2 103 1 3046 1696 0 Brevibacterium genus 2943 species Brevibacterium linens 0 1703 1 1 2082 0 145360 Sanguibacteraceae family 3 32 Sanguibacter genus 0 60919 2050 1 43 2 1 2007 0 60920 Sanguibacter keddieii species 1 8552 85021 0 family Intrasporangiaceae 9 83 1631 1 Janibacter genus 53457 0 69 2 1 1562 species Janibacter indicus 0 857417 2 60 1 3058 0 267408 Arsenicicoccus genus 2998 2663846 0 no rank 1 1 2998 species Arsenicicoccus sp. oral taxon 190 1658671 0 0 53357 genus Intrasporangium 1 1399 2 38 0 53358 Intrasporangium calvum species 1361 1 2381 1 genus Serinicoccus 265976 0 72 2 1 0 1758689 Serinicoccus sp. JLT9 species 2309 order Catenulisporales 414714 0 5440 1 29 4 3 181 414877 0 Catenulisporaceae family 1 5411 1 5230 414878 0 Catenulispora genus 2 72 Catenulispora acidiphila species 0 304895 5158 1 order Pseudonocardiales 0 85010 84178 1 344 42 83834 1 family Pseudonocardiaceae 2070 0 1457 41 386 7 genus Amycolatopsis 1813 0 20727 1 Amycolatopsis mediterranei species 0 33910 4199 1 2997 1814 0 Amycolatopsis methanolica species 1 31958 0 species Amycolatopsis orientalis 4889 1 2601 species Amycolatopsis japonica 0 208439 1 2 5655 2618356 0 no rank 2548 species Amycolatopsis sp. BJA-103 1911175 0 1 1 3107 1896961 0 Amycolatopsis sp. AA4 species 0 674734 Alloactinosynnema genus 1 2666 2 24 0 2636053 no rank 2642 1 2642 0 1653480 species Alloactinosynnema sp. L-07 1 genus Kutzneria 0 43356 4626 1 33 2 1 4593 43357 0 Kutzneria albida species 268 6 genus Actinoalloteichus 65496 0 12047 1 1 species Actinoalloteichus sp. ADI127-7 0 1612552 2665 2489 1470176 0 species Actinoalloteichus hoggarensis 1 1 1824 0 340345 Actinoalloteichus hymeniacidonis species no rank 2644606 0 4801 2 1 0 2072503 species Actinoalloteichus sp. AHMU CJ021 2170 1 species Actinoalloteichus sp. GBA129-24 0 1612551 2631 36 2 3622 1 genus Saccharopolyspora 0 1835 1 3586 1836 0 species Saccharopolyspora erythraea 1 8496 40566 0 genus Actinosynnema 3 188 1 4059 species Actinosynnema mirum 0 40567 1 species Actinosynnema pretiosum 0 42197 4249 2 51 0 165301 genus Lentzea 1 3441 3390 Lentzea guizhouensis species 1586287 0 1 2 7 1 1222 0 1851 Saccharomonospora genus 1215 0 1852 Saccharomonospora viridis species 1 65 2 Saccharothrix genus 0 2071 4086 1 103731 0 species Saccharothrix espanaensis 4021 1 Pseudonocardia genus 1847 0 16971 1 370 8 1 species Pseudonocardia dioxanivorans 240495 0 2679 13922 no rank 0 2619320 6 Pseudonocardia sp. EC080625-04 species 0 1096868 2194 1 1 species Pseudonocardia sp. HH130630-07 0 1690815 2121 2462 Pseudonocardia sp. AL041005-10 species 0 445576 1 2280 1641402 0 species Pseudonocardia sp. HH130629-09 1 2428 Pseudonocardia sp. EC080619-01 species 1096856 0 1 2437 Pseudonocardia sp. EC080610-09 species 0 1688404 1 1 2784 2029 0 genus Kibdelosporangium 2 9 2775 species Kibdelosporangium phytohabitans 0 860235 1 genus Prauserella 0 142577 1689 1 24 2 1 1665 Prauserella marina species 530584 0 3237 1 order Nakamurellales 0 1643684 30 4 3 159 85031 0 Nakamurellaceae family 1 3207 Nakamurella genus 53460 0 3048 1 15 2 3033 Nakamurella multipartita species 53461 0 1 0 622450 order Actinopolysporales 1 2316 4 2 3 9 0 622451 family Actinopolysporaceae 1 2314 Actinopolyspora genus 1849 0 2305 1 15 2 1 414996 0 species Actinopolyspora erythraea 2290 29920 1 phylum Chloroflexi 200795 0 4 45 24 6 class Anaerolineae 0 292625 6942 1 5 48 1 6918 0 292629 Anaerolineales order 1 6870 0 292628 Anaerolineaceae family 4 32 1 1803 0 233189 genus species Anaerolinea thermophila 0 167964 1803 1 1324991 0 no rank 3714 1 1889813 0 species Anaerolineaceae bacterium oral taxon 439 3714 1 2019482 0 genus 1321 1 1 Brevefilum fermentans species 1986204 0 1321 189775 0 Thermomicrobia class 1 3360 9 36 1 886 189776 0 Thermomicrobiales order 4 23 2 3 Thermomicrobiaceae family 189777 0 863 1 2 1 499 0 genus Thermomicrobium 1 861 860 0 500 species Thermomicrobium roseum 1 0 85000 subclass 2438 4 4 68 1 2438 0 85001 order Sphaerobacterales 2370 0 255728 suborder 3 2370 1 family Sphaerobacteraceae 85002 0 69 3 11 2 genus Sphaerobacter 0 2056 2301 1 1 2290 species Sphaerobacter thermophilus 2057 0 33 5 class Caldilineae 475962 0 2859 1 19 4 2826 1 Caldilineales order 475963 0 475964 0 Caldilineaceae family 1 2807 3 12 1 2795 233191 0 Caldilinea genus 2 65 1 0 133453 species Caldilinea aerophila 2730 Dehalococcoidia class 301297 0 5255 1 18 8 2870 order 0 1202465 4 9 4 2870 1 Dehalococcoidaceae family 0 1202464 genus Dehalococcoides 0 61434 2861 1 5 3 2452 0 61435 species Dehalococcoides mccartyi 1 404 no rank 237581 0 1 1 species Dehalococcoides sp. UCH007 1522671 0 404 3 28 1 2367 0 670486 Dehalogenimonas genus 552810 0 species Dehalogenimonas lykanthroporepellens 1456 1 883 species Dehalogenimonas formicexedens 1839801 0 1 54 11 6158 1 Chloroflexia class 32061 0 10 64 32064 0 order Chloroflexales 1 6104 suborder 1508594 0 2845 5 1 2845 0 1106 family Chloroflexaceae 5 3 4 8 1 2842 0 1107 Chloroflexus genus 2 1039 1 2078 1108 0 species Chloroflexus aurantiacus Chloroflexus sp. Y-400-fl strain 480224 0 1039 1 756 species Chloroflexus aggregans 0 152260 1 4 1508595 0 suborder 3195 1 3195 0 1508635 Roseiflexaceae family 4 28 1 3167 120961 0 genus Roseiflexus 3 8 1188 120962 0 species Roseiflexus castenholzii 1 0 2609473 no rank 1971 1 1 1971 357808 0 species Roseiflexus sp. RS-1 Ardenticatenia class 0 1382928 5342 1 85 5 4 126 1 5257 1382929 0 Ardenticatenales order 51 3 5131 1 family Ardenticatenaceae 0 1382930 5080 1 Candidatus Promineofilum genus 1988031 0 57 2 5023 1806508 0 Candidatus Promineofilum breve species 1 725 1143 0 1239 phylum Firmicutes 1 18097864 730 434 Bacilli class 91061 0 1085754 1 591378 1 order Lactobacillales 186826 0 11283 165 1 6998 186827 0 family Aerococcaceae 8 33 69 7 Aerococcus genus 1375 0 6965 1 Aerococcus christensenii species 0 87541 924 1 1 1176 Aerococcus sanguinicola species 0 119206 1 1232 0 1377 Aerococcus viridans species 1 0 1376 Aerococcus urinae species 1320 1060 51665 0 Aerococcus urinaeequi species 1 species Aerococcus urinaehominis 128944 0 1184 1 family Carnobacteriaceae 0 186828 8496 1 14 11 1 5150 2747 0 genus Carnobacterium 5 45 2 2802 0 257487 no rank Carnobacterium sp. CP1 species 1564681 0 1541 1 1 1261 Carnobacterium sp. 17-4 species 208596 0 1 1203 species Carnobacterium inhibens 0 147709 1 1100 2751 0 species Carnobacterium maltaromaticum 2093 1 genus Jeotgalibaca 0 1470540 11 3 1174 708126 0 species Jeotgalibaca dankookensis 1 1 0 2621505 no rank 908 0 1903686 Jeotgalibaca sp. PTS2502 species 908 1 2 2 1 1239 0 191769 Marinilactibacillus genus 1237 2632303 0 no rank 1 1911586 0 Marinilactibacillus sp. 15R species 1237 1 19 236 1 99386 81852 0 Enterococcaceae family 0 33969 genus Melissococcus 1 902 2 2 1 900 0 33970 species Melissococcus plutonius 12 2852 1350 0 Enterococcus genus 1 93898 1943 species Enterococcus casseliflavus 0 37734 1 11580 Enterococcus faecalis species 0 1351 1 1 species Enterococcus faecium 0 1352 61562 0 53346 species Enterococcus mundtii 1654 1 Enterococcus durans species 0 53345 1893 1 1 Enterococcus thailandicus species 0 417368 969 no rank 2608891 0 4655 3 1378 2057791 0 species Enterococcus sp. CR-Ec1 1 1 1843 Enterococcus sp. FDAARGOS_375 species 0 2060307 1 1434 species Enterococcus sp. FDAARGOS_163 0 2060306 5066 Enterococcus hirae species 1354 0 1 1 1724 species Enterococcus wangshanyuanii 2005703 0 genus 51668 0 1622 1 1622 species Tetragenococcus halophilus 0 51669 1 2728 1 Vagococcus genus 0 2737 3 3 1628 0 519472 Vagococcus teuberi species 1 1097 0 633807 species Vagococcus penaei 1 1 11256 0 81850 Leuconostocaceae family 18 12 2 4 1 681 0 46254 Oenococcus genus 1 0 1247 Oenococcus oeni species 677 4044 1 Weissella genus 0 46255 30 6 1189 0 137591 Weissella cibaria species 1 1 728 Weissella koreensis species 0 165096 1 516 1249 0 species Weissella paramesenteroides 1 838 759620 0 Weissella ceti species 1 743 1631871 0 species Weissella jogaejeotgali 6519 1 genus Leuconostoc 0 1243 24 9 587 136609 0 Leuconostoc kimchii species 1 1092 Leuconostoc gelidum species 0 1244 1 1 no rank 0 2685106 668 species Leuconostoc sp. C2 0 979982 668 1 1 398 Leuconostoc citreum species 0 33964 0 1245 species Leuconostoc mesenteroides 1441 1 959 Leuconostoc lactis species 0 1246 1 505 0 1252 Leuconostoc carnosum species 1 Leuconostoc garlicum species 0 255248 845 1 852 58 73785 1 Lactobacillaceae family 0 33958 3 2767842 0 genus 3798 Lactobacillus pentosus species 0 1589 874 1 1 446 0 60520 Lactobacillus paraplantarum species 0 1590 species Lactobacillus plantarum 2478 1 6 genus 2767879 0 5152 0 1074467 species Lactobacillus heilongjiangensis 825 1 740 1602 0 Lactobacillus alimentarius species 1 1 Lactobacillus allii species 0 1847728 826 species Lactobacillus farciminis 1612 0 972 1 1 392416 0 species Lactobacillus crustorum 968 1 0 1007676 Lactobacillus ginsenosidimutans species 821 genus 0 2767889 1810 2 0 1610 species Lactobacillus coryniformis 1023 1 375175 0 species Lactobacillus backii 787 1 1253 0 genus Pediococcus 1 4280 6 52 species group 0 1670797 758 1 1 758 species Pediococcus acidilactici 1254 0 species Pediococcus damnosus 0 51663 950 1 Pediococcus pentosaceus species 0 1255 983 1 Pediococcus claussenii species 187452 0 826 1 1 0 114090 Pediococcus inopinatus species 711 4 2767887 0 genus 10719 1 0 1623 species Lactobacillus ruminis 3116 1316 89059 0 species Lactobacillus acidipiscis 1 1 2178 species Lactobacillus agilis 0 1601 4109 Lactobacillus salivarius species 0 1624 1 4176 genus 0 2767876 1 1 4176 Lactobacillus amylophilus species 1603 0 genus 2767892 0 844 1 1 240427 0 Lactobacillus paracollinoides species 844 2 938 0 2767881 genus Lactobacillus lindneri species 53444 0 598 1 340 Lactobacillus sanfranciscensis species 1625 0 1 0 2767877 genus 773 1 1 773 0 148814 Lactobacillus kunkeei species 2 2225 genus 2767885 0 1 Lactobacillus sakei species 0 1599 1230 Lactobacillus curvatus species 0 28038 995 1 1 637 0 2767890 genus Lactobacillus hokkaidonensis species 0 1193095 637 1 4823 2742598 0 genus 3 Lactobacillus fermentum species 1613 0 1167 1 species Lactobacillus reuteri 0 1598 2408 1 1248 97478 0 Lactobacillus mucosae species 1 2057 16 20640 1 genus Lactobacillus 0 1578 2238 no rank 0 2620435 4 1 465 0 1545702 species Lactobacillus sp. wkB8 2108362 0 species Lactobacillus sp. D1501 590 1 species Lactobacillus sp. CBA3606 2099789 0 659 1 1 0 2099788 Lactobacillus sp. CBA3605 species 524 1 2591 species Lactobacillus amylovorus 1604 0 1 2850 species Lactobacillus johnsonii 33959 0 1 464 Lactobacillus jensenii species 0 109790 1509 0 1596 Lactobacillus gasseri species 1 577 species Lactobacillus acetotolerans 1600 0 1 614 species Lactobacillus gallinarum 52242 0 1 1 species Lactobacillus amylolyticus 83683 0 964 593 species Lactobacillus kefiranofaciens 267818 0 1 897 1579 0 species Lactobacillus acidophilus 1 1 3959 species Lactobacillus delbrueckii 0 1584 Lactobacillus helveticus species 0 1587 1327 1 3 2095 2767893 0 genus 876 0 1581 Lactobacillus buchneri species 1 species Lactobacillus curieae 0 1138822 593 1 Lactobacillus parabuchneri species 0 152331 626 1 3 3034 genus 0 2767886 1 1456 1580 0 species Lactobacillus brevis species Lactobacillus koreensis 637971 0 615 1 species Lactobacillus zymae 0 267363 963 1 3 2759736 0 genus 6989 1 2702 0 1582 Lactobacillus casei species 0 1597 species Lactobacillus paracasei 2261 1 47715 0 species Lactobacillus rhamnosus 2026 1 9585 49 family Streptococcaceae 0 1300 379350 1 16 5 genus Lactococcus 0 1357 12511 1 1 species Lactococcus raffinolactis 1366 0 1385 7575 species Lactococcus lactis 1358 0 1 Lactococcus piscium species 1364 0 1072 1 2463 Lactococcus garvieae species 1363 0 1 genus Streptococcus 0 1301 357254 1 7870 43 1 0 197614 species Streptococcus pasteurianus 4626 2294 Streptococcus sanguinis species 1305 0 1 1 Streptococcus oralis species 0 1303 6090 1 1311 0 species Streptococcus agalactiae 26197 832 species Streptococcus halotolerans 1814128 0 1 1 species Streptococcus pseudopneumoniae 257758 0 2338 3097 0 82348 Streptococcus pluranimalium species 1 1250 Streptococcus macedonicus species 0 59310 1 Streptococcus parasanguinis species 1318 0 2554 1 1 0 1313 species Streptococcus pneumoniae 6424 1 species Streptococcus himalayensis 1888195 0 1049 1742 species Streptococcus pantholopis 1811193 0 1 7910 1335 0 Streptococcus equinus species 1 species group 119603 0 5491 2 1336 0 Streptococcus equi species 2351 1 1334 0 species Streptococcus dysgalactiae 3140 1 1 Streptococcus lutetiensis species 150055 0 4644 Streptococcus marmotae species 0 1825069 1017 1 7 26144 0 2608887 no rank 1 2323 species Streptococcus sp. NPS 308 0 1902136 14119 Streptococcus sp. FDAARGOS_192 species 0 1839799 1 0 1156431 Streptococcus sp. I-G2 species 1880 1 1 0 712633 species Streptococcus sp. oral taxon 431 1314 1 1156433 0 Streptococcus sp. I-P16 species 1927 1 0 1759399 species Streptococcus sp. A12 3666 1 1319 0 species Streptococcus sp. 'group B' 915 1 Streptococcus gallolyticus species 0 315405 7359 3 species group 671232 0 82293 1 50964 species Streptococcus constellatus 0 76860 2831 1338 0 species Streptococcus intermedius 1 1 28498 species Streptococcus anginosus 1328 0 Streptococcus uberis species 0 1349 713 1 1 3824 species Streptococcus thermophilus 1308 0 11964 species Streptococcus infantarius 102684 0 1 1 999 400065 0 species Streptococcus merionis 1 56857 1307 0 Streptococcus suis species 1 1309 0 species Streptococcus mutans 1778 Streptococcus mitis species 0 28037 5939 1 Streptococcus gordonii species 0 1302 4002 1 1 4027 0 1326 Streptococcus acidominimus species 1 Streptococcus pyogenes species 0 1314 13083 1 species Streptococcus salivarius 0 1304 47970 1 0 45634 species Streptococcus cristatus 1833 1 Streptococcus parauberis species 0 1348 1698 1346 1346 0 Streptococcus iniae species 1 824 no rank 263855 0 1 824 Lactobacillales bacterium species 0 1993866 1 493646 1 order Bacillales 0 1385 1456 268 42 1048 1 42318 90964 0 Staphylococcaceae family 2 5 45669 0 genus Salinicoccus 1 1917 0 407035 species Salinicoccus halodurans 1912 1 11 4 Macrococcus genus 69965 0 3910 1 1 1064 1855823 0 Macrococcus canis species 0 69966 Macrococcus caseolyticus species 1612 1 0 2619255 no rank 1223 1 species Macrococcus sp. IME1552 1898474 0 1223 1 4 2 673 1 genus Auricoccucs 0 2005363 0 1849491 Auricoccus indicus species 669 1 34770 1 Staphylococcus genus 1279 0 1770 33 1 0 1296 Staphylococcus sciuri species 703 1 1206 Staphylococcus condimenti species 70255 0 402 0 1294 Staphylococcus muscae species 1 1 905 0 1295 Staphylococcus schleiferi species 1537 45972 0 Staphylococcus pasteuri species 1 1 737 species Staphylococcus agnetis 0 985762 638 0 1292 species Staphylococcus warneri 1 Staphylococcus simulans species 1286 0 1044 1 1 Staphylococcus hyicus species 0 1284 749 1 985002 0 species Staphylococcus argenteus 904 Staphylococcus lutrae species 155085 0 603 1 1195 0 246432 species Staphylococcus equorum 1 0 214473 species Staphylococcus nepalensis 767 1 2007 Staphylococcus xylosus species 0 1288 1 1105 species Staphylococcus haemolyticus 0 1283 1 1 70258 0 Staphylococcus piscifermentans species 997 873 species Staphylococcus stepanovicii 0 643214 1 1432 0 283734 Staphylococcus pseudintermedius species 1 1 968 Staphylococcus lugdunensis species 0 28035 774 91994 0 no rank 1 1 0 1715860 Staphylococcus sp. AntiMn-1 species 774 1 736 0 29388 species Staphylococcus capitis 29384 0 species Staphylococcus kloosii 599 1 Staphylococcus cohnii species 0 29382 762 1 774 1290 0 Staphylococcus hominis species 1 1 621 308354 0 Staphylococcus simiae species 1 1199 46127 0 Staphylococcus felis species 702 species Staphylococcus saprophyticus 0 29385 1 1 170573 0 species Staphylococcus pettenkoferi 997 1 1281 0 species Staphylococcus carnosus 938 Staphylococcus succinus species 61015 0 824 1 3981 Staphylococcus aureus species 1280 0 1 species Staphylococcus epidermidis 1282 0 1321 1 7909 no rank 539002 0 9 no rank 539742 0 6302 7 Exiguobacterium genus 33986 0 6302 1 134 7 0 132920 Exiguobacterium antarcticum species 1224 1 1411 332410 0 species Exiguobacterium sibiricum 1 3533 2644629 0 no rank 4 1 Exiguobacterium sp. U13-1 species 1849031 0 690 1 1409 Exiguobacterium sp. AT1b species 360911 0 1 Exiguobacterium sp. ZWU0009 species 1224749 0 697 1 1399115 0 species Exiguobacterium sp. MH3 737 2 1607 no rank 539738 0 2 2 0 1378 genus Gemella 1 1607 1 1605 no rank 0 2624949 1 0 1785995 species Gemella sp. oral taxon 928 1605 1 157784 0 186822 family Paenibacillaceae 46 399 2 10 1 4763 0 76632 Thermobacillus genus 1 4753 species Thermobacillus composti 377615 0 3 no rank 0 85151 4229 3 11 1 4229 0 55079 genus Aneurinibacillus 1862 no rank 2642329 0 1 0 1450761 Aneurinibacillus sp. XH2 species 1862 1 2356 0 1500254 Aneurinibacillus soli species 1 1317 36 Paenibacillus genus 0 44249 140882 1 1 species group 0 2044880 4441 1 Paenibacillus riograndensis species 483937 0 4441 1 189426 0 Paenibacillus odorifer species 3329 1 5962 0 44251 Paenibacillus durus species 1 species Paenibacillus peoriae 59893 0 2943 1 species Paenibacillus yonginensis 0 1462996 4105 1 Paenibacillus swuensis species 1178515 0 2109 0 189425 Paenibacillus graminis species 4178 1 Paenibacillus terrae species 159743 0 2579 1 1 8720 species Paenibacillus polymyxa 1406 0 13 no rank 0 185978 47933 5426 Paenibacillus sp. FSL R7-0273 species 1536772 0 1 1 species Paenibacillus sp. FSL H7-0737 0 1536775 2164 1 0 1536770 species Paenibacillus sp. FSL R5-0345 2149 1 4368 1695218 0 Paenibacillus sp. 32O-W species 0 1536769 species Paenibacillus sp. FSL P4-0081 4932 1 5118 species Paenibacillus sp. FSL R7-0331 0 1536773 1 3624 species Paenibacillus sp. JDR-2 0 324057 1 1 Paenibacillus sp. Y412MC10 species 0 481743 3776 1536771 0 species Paenibacillus sp. FSL R5-0912 5509 1 1 0 1870819 Paenibacillus sp. BIHB4019 species 2548 1 2232 2069255 0 species Paenibacillus sp. lzh-N1 1 4967 1536774 0 species Paenibacillus sp. FSL H7-0357 1 1566358 0 species Paenibacillus sp. IHBB 10380 1120 5547 0 169760 Paenibacillus stellifer species 1 1 Paenibacillus beijingensis species 1126833 0 3478 4071 0 1870820 species Paenibacillus ihbetae 1 1 2799 0 528191 Paenibacillus xylanexedens species 1763538 0 species Paenibacillus crassostreae 1878 1 2929 162209 0 species Paenibacillus naphthalenovorans 1 2771 0 172713 Paenibacillus kribbensis species 1 4218 0 1616788 Paenibacillus bovis species 1 7073 61624 0 species Paenibacillus mucilaginosus 1 1 Paenibacillus sabinae species 0 365617 4080 Paenibacillus larvae species 1464 0 2646 1 1 6425 Paenibacillus donghaensis species 0 414771 5351 160799 0 species Paenibacillus borealis 1 7511 1 Brevibacillus genus 0 55080 64 4 1 2608 species Brevibacillus laterosporus 1465 0 3107 1393 0 species Brevibacillus brevis 1 1 species Brevibacillus formosus 0 54913 1732 27 75 186818 0 family Planococcaceae 1 33532 31 5 9641 1 genus Sporosarcina 1569 0 2 4315 no rank 0 2647733 1 1930764 0 species Sporosarcina sp. P33 2211 1 Sporosarcina sp. P37 species 0 1930546 2104 1344 1476 0 species Sporosarcina psychrophila 1 1 species Sporosarcina ureae 0 1571 3951 1 1616 0 1649 Kurthia genus 2 2 1 1614 no rank 2644826 0 1614 Kurthia sp. 11kri321 species 0 1750719 1 1 14594 1372 0 Planococcus genus 12 257 species Planococcus maritimus 192421 0 3073 1 1 0 1374 Planococcus kocurii species 1161 1 720 Planococcus sp. L10.15 species 1302659 0 1 1741 Planococcus plakortidis species 1038856 0 1244 1598147 0 Planococcus faecalis species 1 species Planococcus donghaensis 0 414778 921 1 1 Planococcus antarcticus species 161360 0 1378 1215089 0 Planococcus halocryophilus species 719 1 2 0 2662419 no rank 2005 1229 2058136 0 species Planococcus sp. MB-3u-03 1 Planococcus sp. PAMC 21323 species 0 1526927 776 1 1 1375 Planococcus rifietoensis species 0 200991 genus Jeotgalibacillus 157226 0 2123 1 6 2 1 2117 Jeotgalibacillus malaysiensis species 0 1508404 Rummeliibacillus genus 0 648802 1627 1 3 2 1 1624 0 241244 species Rummeliibacillus stabekisii 3856 1 genus Solibacillus 648800 0 24 3 1 2650 Solibacillus silvestris species 76853 0 1 no rank 0 2637870 1182 Solibacillus sp. R5-41 species 0 2048654 1182 1 4274 1 Thermoactinomycetaceae family 0 186824 17 4 2 227 1677050 0 genus Novibacillus 1 4199 1 3972 1471761 0 species Novibacillus thermophilus 1 58 0 292635 genus Laceyella 14582 1 family Alicyclobacillaceae 186823 0 88 9 42 2 4093 1 genus Alicyclobacillus 0 29330 4051 species Alicyclobacillus acidocaldarius 0 405212 1 3 95 0 1129704 Kyrpidia genus 1 3267 1 Kyrpidia sp. EA-1 species 0 2055160 1401 1 1771 33943 0 Kyrpidia tusciae species 7134 1 Tumebacillus genus 0 432330 87 3 1 4721 Tumebacillus avium species 0 1903704 1 Tumebacillus algifaecis species 1214604 0 2326 119 443 186817 0 family Bacillaceae 1 218642 1 1947 0 459532 genus Terribacillus 2 5 1 1942 586416 0 Terribacillus aidingensis species 58 5819 1 134236 1386 0 genus Bacillus 1 1515 412384 0 Bacillus aryabhattai species 1 2878 Bacillus glycinifermentans species 0 1664069 0 185979 no rank 20534 19 1 species Bacillus sp. SJ-10 563169 0 887 1355 Bacillus sp. FJAT-14266 species 1837130 0 1 1164 0 1774743 Bacillus sp. SDLI1 species 1 288 1570330 0 species Bacillus sp. BH072 1 1 species Bacillus sp. MD-5 2009331 0 926 1 Bacillus sp. H15-1 species 0 1856406 1686 1 420 Bacillus sp. Lzh-5 species 0 2049935 species Bacillus sp. 275 1941347 0 1025 1 1 1127744 0 species Bacillus sp. JS 863 1 1094 1446792 0 species Bacillus sp. Pc3 1 1537 Bacillus sp. 1NLA3E species 0 666686 515 1574141 0 Bacillus sp. YP1 species 1 1 1682 2026248 0 species Bacillus sp. 1s-1 1 1536 species Bacillus sp. OxB-1 0 98228 Bacillus sp. (in: Bacteria) species 0 1409 400 1 1955 species Bacillus sp. X1(2014) 0 1565991 1 1535 0 1827146 Bacillus sp. IHB B 7164 species 1 0 1628753 species Bacillus sp. LM 4-2 299 1 1 1367 species Bacillus sp. WP8 756828 0 1 species Bacillus methanolicus 1471 0 1776 species group 0 1792192 1869 1 1869 Bacillus altitudinis species 293387 0 1 5527 0 1398 Bacillus coagulans species 1 1354 Bacillus cellulosilyticus species 0 1413 1 3019 561879 0 Bacillus safensis species 1 1560 0 1547283 Bacillus weihaiensis species 1 1 0 1479 species Bacillus smithii 1620 1 species Bacillus flexus 0 86664 1214 1 1874 135735 0 Bacillus endophyticus species 34540 86661 0 species group 10 1078 species Bacillus toyonensis 0 155322 1 species Bacillus cytotoxicus 0 580165 1775 1 0 1428 Bacillus thuringiensis species 10857 1 3 3115 no rank 0 2750818 species Bacillus sp. FDAARGOS_235 0 1839798 1567 1 Bacillus sp. HBCD-sjtu species 2053832 0 860 1 Bacillus sp. ABP14 species 0 1892404 688 1 Bacillus anthracis species 1392 0 897 1 1 11275 species Bacillus cereus 0 1396 1053 species Bacillus bombysepticus 0 658666 1 4490 0 1405 Bacillus mycoides species 1 1514 0 79883 species Bacillus horikoshii 1 1 1404 0 Bacillus megaterium species 3936 1377 0 1178537 species Bacillus xiamenensis 1 283 Bacillus gibsonii species 79881 0 1 6648 species Bacillus pumilus 1408 0 1 324767 0 species Bacillus infantis 2908 1 1 1189 Bacillus cohnii species 0 33932 9 29829 species group 653685 0 species Bacillus subtilis 1423 0 10318 1 0 1938374 species subgroup 9246 3 1 1165 0 659243 Bacillus siamensis species 3663 0 492670 Bacillus velezensis species 1 1 1390 0 species Bacillus amyloliquefaciens 4418 1 species Bacillus atrophaeus 1452 0 2321 1 2341 Bacillus paralicheniformis species 0 1648923 72361 0 species Bacillus vallismortis 507 1 2674 0 119858 Bacillus sonorensis species 1 2422 1402 0 species Bacillus licheniformis 1 1 1453 species Bacillus beveridgei 632773 0 1 8382 0 150247 genus Anoxybacillus 6 36 species Anoxybacillus gonensis 198467 0 1355 1 3130 no rank 0 2639704 2 1576 0 1490052 Anoxybacillus sp. B2M1 species 1 1 1554 Anoxybacillus sp. B7M1 species 1490057 0 0 33934 species Anoxybacillus flavithermus 2382 1 Anoxybacillus amylolyticus species 294699 0 1479 1 1 1419 0 175304 genus Lentibacillus 2 1 1 1472767 0 species Lentibacillus amyloliquefaciens 1418 genus 2675230 0 3976 2 1 2566 665099 0 Bacillus oceanisediminis species 1 1410 0 859143 Bacillus kochii species 10 2 2353 1 Oceanobacillus genus 0 182709 2343 0 182710 Oceanobacillus iheyensis species 1 7 100 1 9111 0 84406 genus Virgibacillus 1 Virgibacillus phasianinus species 2017483 0 1662 species Virgibacillus halodenitrificans 1482 0 1304 1 3112 2620237 0 no rank 2 1 species Virgibacillus sp. SK37 0 403957 1028 species Virgibacillus sp. 6R 0 1911587 2084 1 0 1473 species Virgibacillus pantothenticus 1367 1 1 163877 0 species Virgibacillus necropolis 1566 5 7967 0 2675234 genus 1 2383 0 79880 species Bacillus clausii 300825 0 Bacillus lehensis species 1386 1 1064 0 86665 Bacillus halodurans species 1 1 1480 199441 0 species Bacillus krulwichiae 1 79885 0 Bacillus pseudofirmus species 1654 3 19 1329200 0 Fictibacillus genus 1 3779 Fictibacillus arsenicus species 255247 0 1946 1 1814 0 1221500 species Fictibacillus phosphorivorans 1 127 5 genus Lysinibacillus 400634 0 9233 1 1 1145276 0 species Lysinibacillus varians 1742 1911 no rank 2636778 0 1 1 1911 0 2072025 Lysinibacillus sp. YS11 species Lysinibacillus fusiformis species 28031 0 1452 1 4001 Lysinibacillus sphaericus species 0 1421 1 1 1266 1055323 0 genus 1266 33936 0 Aeribacillus pallidus species 1 2 14 1 1496 0 1906945 genus Parageobacillus 1 1482 0 1426 species Parageobacillus thermoglucosidasius 2 5810 genus 2675229 0 1 2693 264697 0 species Bacillus muralis Bacillus simplex species 0 1478 3117 1 351195 0 genus 1685 1 1 1685 1230341 0 Salimicrobium jeotgali species 29331 0 genus Amphibacillus 1 3361 2 1 0 1449 species Amphibacillus xylanus 3360 1 19249 1 Geobacillus genus 129337 0 1228 15 1 0 1422 species Geobacillus stearothermophilus 1802 0 2642459 no rank 6055 6 1579 0 581103 Geobacillus sp. Y4.1MC1 species 1 1 species Geobacillus sp. GHH01 1233873 0 674 Geobacillus sp. C56-T3 species 691437 0 1030 1 471223 0 Geobacillus sp. WCH70 species 1379 1 1 717 Geobacillus sp. Y412MC61 species 544556 0 676 Geobacillus sp. Y412MC52 species 550542 0 1 1 1293 species Geobacillus genomosp. 3 0 1921421 5291 species group 0 1505648 4 species Geobacillus thermocatenulatus 33938 0 1196 1 2386 33941 0 Geobacillus thermoleovorans species 1 species Geobacillus kaustophilus 1462 0 577 1 0 169283 species Geobacillus lituanicus 1132 1 1751 Geobacillus subterraneus species 129338 0 1 1829 0 33940 species Geobacillus thermodenitrificans 1 3 2 45667 0 genus Halobacillus 1 2929 1 0 402384 species Halobacillus mangrovi 1704 1 1223 species Halobacillus halophilus 0 1570 29 9 Listeriaceae family 0 186820 10690 1 2 3 0 2755 genus Brochothrix 1 1107 1 1104 2756 0 species Brochothrix thermosphacta 109 6 9554 1 genus Listeria 0 1637 1 1642 0 species Listeria innocua 1149 Listeria seeligeri species 1640 0 966 1 1 Listeria ivanovii species 1638 0 1904 1 1639 0 Listeria monocytogenes species 4296 1 1130 Listeria welshimeri species 0 1643 186821 0 Sporolactobacillaceae family 1 2459 2 8 no rank 663587 0 2451 1 1 2451 [Bacillus] selenitireducens species 0 85683 0 1737404 Tissierellia class 1 34754 19 22 16 1586 1737405 0 Tissierellales order 1 33241 3 6 0 2042895 family Gottschalkiaceae 1 1657 2 3 1 1651 0 1505664 Gottschalkia genus species Gottschalkia acidurici 1556 0 1648 1 12 8874 1570339 0 Peptoniphilaceae family 1 29998 2 89 1 1906 543311 0 Parvimonas genus 1 1817 Parvimonas micra species 33033 0 1 2041 162289 0 genus Peptoniphilus 2 10 2031 no rank 2637196 0 1 1 0 1912856 species Peptoniphilus sp. ING2-D1G 2031 3176 1 Anaerococcus genus 165779 0 20 3 1 1524 1870984 0 species Anaerococcus mediterraneensis 33034 0 Anaerococcus prevotii species 1632 1 4 2 Murdochiella genus 0 1161127 10625 1 0 1852373 Murdochiella vaginalis species 10621 1 3376 1 Finegoldia genus 0 150022 9 2 1 3367 Finegoldia magna species 0 1260 2 1491 1737407 0 no rank 0 1582879 Ezakiella genus 1 1491 2 61 1 0 1852374 species Ezakiella massiliensis 1430 no rank 0 33974 4541 2 63 2 4541 1 genus Ndongobacter 1930845 0 4478 species Ndongobacter massiliensis 0 1871025 1 class Erysipelotrichia 0 526524 71041 1 19 11 222 10 order Erysipelotrichales 0 526525 71022 1 0 128827 family Erysipelotrichaceae 1 70800 9 2011 0 1647 Erysipelothrix genus 1 3823 3 19 1 2259 species Erysipelothrix rhusiopathiae 0 1648 1514105 0 species Erysipelothrix larvae 1545 1 genus Turicibacter 0 191303 22702 1 671 2 2638206 0 no rank 22031 1 1 Turicibacter sp. H121 species 0 1712675 22031 2 17 1 8146 1729679 0 genus Faecalibaculum 8129 Faecalibaculum rodentium species 1702221 0 1 1 no rank 544447 0 34118 34118 0 1834207 Erysipelotrichaceae bacterium I46 species 1 1 1110 no rank 84086 0 species endosymbiont 'TC1' of Trimyema compressum 243899 0 1110 1 849 221 Clostridia class 186801 0 16734143 1 1 6231 0 53433 order Halanaerobiales 11 6 8 5 family Halanaerobiaceae 972 0 4066 1 1 2701 0 2330 genus Halanaerobium 3 9 1 0 2331 Halanaerobium praevalens species 1077 1 1615 0 656519 species Halanaerobium hydrogeniformans 1 genus 32636 0 1357 1 1357 Halothermothrix orenii species 31909 0 53434 0 family Halobacteroidaceae 1 2159 5 13 2 1 1 1322 28186 0 genus Acetohalobium 28187 0 Acetohalobium arabaticum species 1321 1 3 2 Halobacteroides genus 42417 0 824 1 1 Halobacteroides halobius species 0 42422 821 38 77 1 40308 68295 0 order Thermoanaerobacterales 18 149 1 20393 0 186814 Thermoanaerobacteraceae family 4 42857 0 no rank 4768 1626 1 Ammonifex genus 42837 0 9 2 42838 0 Ammonifex degensii species 1617 1 2 2 1 3142 0 44260 Moorella genus 3140 1525 0 species Moorella thermoacetica 1 genus Thermacetogenium 140458 0 2144 1 5 2 Thermacetogenium phaeum species 85874 0 2139 1 1112 129957 0 genus 1 1112 129958 0 species Carboxydothermus hydrogenoformans 1 10643 1 genus Thermoanaerobacter 1754 0 499 9 species Thermoanaerobacter pseudethanolicus 0 496866 1389 1 2 no rank 0 2636821 2804 1333 Thermoanaerobacter sp. X514 species 399726 0 1 species Thermoanaerobacter sp. X513 0 573062 1471 1 2325 0 species Thermoanaerobacter kivui 912 1 1343 0 583357 Thermoanaerobacter mathranii species 1 1 1219 46354 0 Thermoanaerobacter wiegelii species 1 Thermoanaerobacter brockii species 0 29323 1389 1 108150 0 species Thermoanaerobacter italicus 1088 1 1577 genus 249529 0 1 0 911092 species Caldanaerobacter subterraneus 1577 Thermoanaerobacterales Family IV. Incertae Sedis family 0 543372 1865 1 46 3 1819 1 genus Mahella 252965 0 10 2 species Mahella australiensis 0 252966 1809 1 1 460 227387 0 family Thermodesulfobiaceae 3 1 2 5 1 459 0 227388 genus Thermodesulfobium 1 species Thermodesulfobium narugense 0 184064 454 1 17513 0 543371 Thermoanaerobacterales Family III. Incertae Sedis family 13 97 9 319 1 11873 0 44000 Caldicellulosiruptor genus 1 species Caldicellulosiruptor lactoaceticus 0 52766 1251 1 1553 0 55205 species Caldicellulosiruptor owensensis 1 52765 0 species Caldicellulosiruptor kristjanssonii 1458 1 species Caldicellulosiruptor hydrothermalis 413888 0 1711 species Caldicellulosiruptor obsidiansis 717609 0 1402 1 0 413889 species Caldicellulosiruptor kronotskyensis 1396 1 1 species Caldicellulosiruptor saccharolyticus 0 44001 1320 1463 species Caldicellulosiruptor bescii 31899 0 1 3 14 1 5543 0 28895 genus Thermoanaerobacterium 1 0 1517 Thermoanaerobacterium thermosaccharolyticum species 3722 1 29329 0 Thermoanaerobacterium xylanolyticum species 1807 0 186802 Clostridiales order 1 16681115 165 38861 3 21 1 8181 0 31984 Heliobacteriaceae family 2 96 1 8160 2697 0 genus Heliobacterium 1 species Heliobacterium modesticaldum 0 35701 8064 520 11 203248 1 Peptostreptococcaceae family 186804 0 2 388 0 1870884 Clostridioides genus 1 186907 1 186519 0 1496 Clostridioides difficile species 2075 0 1411023 no rank 1 1 2075 species Peptostreptococcaceae bacterium oral taxon 929 2081703 0 genus 44259 0 3650 1 1 143361 0 Filifactor alocis species 3650 2 2 0 1849828 Paeniclostridium genus 1 3426 1 3424 Paeniclostridium sordellii species 1505 0 Acetoanaerobium genus 186831 0 2175 1 5 2 2170 species Acetoanaerobium sticklandii 1511 0 1 1 4495 0 1481960 Peptoclostridium genus 2 12 4483 Peptoclostridium acidaminophilum species 0 1731 1 3 61 0 990719 family Christensenellaceae 1 87174 87113 1 Christensenella genus 990721 0 1106 2 0 1805714 Christensenella massiliensis species 86007 1 110141 0 2304686 family 12 1 genus 0 2304693 6937 1 0 84032 [Clostridium] thermosuccinogenes species 6937 1 2305130 0 no rank 68894 1 species Ruminiclostridium sp. KB18 0 1834198 68894 3 0 2304692 genus 13278 5618 288965 0 [Clostridium] clariflavum species 1 1 species Ruminiclostridium thermocellum 0 1515 4524 0 1677857 species Herbivorax saccincola 3136 1 genus 0 2304691 3834 1 1 species [Clostridium] stercorarium 1510 0 3834 1 9400 0 1508657 Ruminiclostridium genus 2 1035 1 8365 [Clostridium] cellulolyticum species 0 1521 31 2 Fastidiosipila genus 236752 0 1663 1 species Fastidiosipila sanguinis 0 236753 1632 1 2 11 1 6135 1637257 0 genus Mageeibacillus 1 0 884684 species Mageeibacillus indolicus 6124 232632 1 family Clostridiaceae 31979 0 3372 41 4291 1 genus Candidatus Arthromitus 0 49082 32 4 2638829 0 no rank 4259 3 1 0 1508644 Candidatus Arthromitus sp. SFB-mouse-NL species 1286 1 1335 Candidatus Arthromitus sp. SFB-mouse species 49118 0 1638 Candidatus Arthromitus sp. SFB-rat-Yit species 0 1041504 1 30 3446 0 1485 genus Clostridium 1 211784 2 no rank 2614128 0 55388 1 5514 755731 0 species Clostridium sp. BNL1100 1 49874 species Clostridium sp. SY8519 0 1042156 1 0 238834 species Clostridium estertheticum 2560 2186 Clostridium novyi species 1542 0 1 1 Clostridium tyrobutyricum species 1519 0 4156 2512 1509 0 Clostridium sporogenes species 1 1 6348 0 1501 species Clostridium pasteurianum 1 Clostridium ljungdahlii species 0 1538 3020 Clostridium acetobutylicum species 0 1488 2379 1 3629 species Clostridium taeniosporum 0 394958 1 1534 0 Clostridium kluyveri species 10573 1 1 species Clostridium argentinense 29341 0 3317 1 5449 1493 0 species Clostridium cellulovorans 2787 Clostridium autoethanogenum species 84023 0 1 1 7973 0 1520 Clostridium beijerinckii species 0 1561 Clostridium baratii species 6106 1 1 4501 0 169679 Clostridium saccharobutylicum species 1 6468 species Clostridium tetani 1513 0 1 Clostridium scatologenes species 0 1548 4111 0 1216932 species Clostridium bornimense 3176 1 1 0 1502 species Clostridium perfringens 18826 1 0 1492 species Clostridium butyricum 6561 21154 1491 0 Clostridium botulinum species 1 2632 84022 0 species Clostridium aceticum 1 3045 1497 0 Clostridium formicaceticum species 1 1 species Clostridium saccharoperbutylacetonicum 0 36745 5320 1 0 1494 species Clostridium cochlearium 7668 0 46867 species Clostridium chauvoei 2509 1 3984 217159 0 Clostridium carboxidivorans species 1 469 1981033 0 Mordavella genus 1 20 3 genus Alkaliphilus 0 114627 5991 1 2952 208226 0 species Alkaliphilus metalliredigens 1 1 species Alkaliphilus oremlandii 0 461876 3019 2 20 0 390805 genus Geosporobacter 1 6725 1424294 0 species Geosporobacter ferrireducens 6705 1 4 13 0 68298 Syntrophomonadaceae family 1 2342 1 1332 0 862 genus 1 species Syntrophomonas wolfei 0 863 1332 2 12 0 129001 Syntrophothermus genus 1 997 1 86170 0 species Syntrophothermus lipocalidus 985 1052 13 9433841 1 family Ruminococcaceae 0 541000 2 30 1 22404 0 253238 genus Ethanoligenens 22374 253239 0 Ethanoligenens harbinense species 1 1 37305 0 1263 Ruminococcus genus 3 352 0 1264 Ruminococcus albus species 15297 1 1 1160721 0 Ruminococcus bicirculans species 21656 1 8072624 0 216851 Faecalibacterium genus 2 3957 1 8068667 species Faecalibacterium prausnitzii 853 0 1 no rank 552397 0 7674 species [Clostridium] cellulosi 0 29343 7674 1 2305133 0 no rank 14854 1 species Ruminococcaceae bacterium CPB6 1572656 0 14854 1 1 1890281 0 genus Herbivorax 1 365 2 1277927 1 genus Flavonifractor 946234 0 0 292800 Flavonifractor plautii species 1277562 1 3 19 0 543349 family Symbiobacteriaceae 1 8636 2733 0 genus Symbiobacterium 1 8617 2 121 Symbiobacterium thermophilum species 2734 0 8496 1 36 5 family Eubacteriaceae 186806 0 50106 1 1482 2 genus Eubacterium 0 1730 46639 1 species Eubacterium limosum 0 1736 45157 1 8 2 3431 1 genus Acetobacterium 33951 0 1 3423 0 33952 Acetobacterium woodii species 27 7131 1 5640387 0 186803 Lachnospiraceae family Herbinix genus 1663717 0 13449 1 26 2 1679721 0 Herbinix luporum species 13423 1 genus Lachnoclostridium 1506553 0 410917 1 1767 4 1 169990 1871021 0 species Lachnoclostridium phocaeense 219218 2608895 0 no rank 1 219218 1834196 0 Lachnoclostridium sp. YL32 species 1 0 66219 Lachnoclostridium phytofermentans species 19942 1 genus Anaerostipes 207244 0 202274 1 89 2 1 649756 0 species Anaerostipes hadrus 202185 0 2569097 genus 226984 1 1 226984 0 39488 [Eubacterium] hallii species 47 3 genus Butyrivibrio 830 0 47486 1 1 43305 0 Butyrivibrio proteoclasticus species 24672 species Butyrivibrio hungatei 185008 0 22767 1 7338 1 Cellulosilyticum genus 698776 0 7 2 1 Cellulosilyticum lentocellum species 29360 0 7331 0 28050 genus 129900 1 1 0 39485 species [Eubacterium] eligens 129900 94 2 885972 1 Roseburia genus 841 0 1 885878 0 301301 species Roseburia hominis 2039240 0 genus Anaerotignum 1 12251 2 12 0 28446 Anaerotignum propionicum species 12239 1 157455 0 2719231 genus 1 0 84030 [Clostridium] saccharolyticum species 157455 1 1422189 186928 0 no rank 2 712991 0 species Lachnospiraceae bacterium oral taxon 500 34752 1 1 1387437 species [Eubacterium] rectale 39491 0 genus 2719313 0 1738385 1 1 [Clostridium] bolteae species 0 208479 1738385 572511 0 genus Blautia 1 378656 3 396 104882 0 2648079 no rank 1 1 species Blautia sp. YL58 1796616 0 104882 1 1322 0 species Blautia hansenii 273378 29 160 1 67995 186807 0 family Peptococcaceae 2 3 51514 0 genus Dehalobacterium 1 6571 1 51515 0 species Dehalobacterium formicoaceticum 6568 genus Desulfosporosinus 79206 0 7290 1 120 4 1 species Desulfosporosinus meridiei 0 79209 2251 1 Desulfosporosinus orientis species 0 1563 2530 2389 species Desulfosporosinus acidiphilus 885581 0 1 1 2653 471826 0 Candidatus Desulforudis genus 2 17 2636 Candidatus Desulforudis audaxviator species 471827 0 1 genus Syntrophobotulus 0 51196 3679 1 14 2 1 species Syntrophobotulus glycolicus 0 51197 3665 1 3176 2282740 0 genus 1 0 102134 species Desulfotomaculum gibsoniae 3176 10 2 Thermincola genus 0 278993 2200 1 1 0 863643 species Thermincola potens 2190 genus Dehalobacter 56112 0 12889 1 116 4 species Dehalobacter restrictus 55583 0 3884 1 2 8889 no rank 0 2635733 1 0 1147129 species Dehalobacter sp. DCA 4425 1 1131462 0 Dehalobacter sp. CF species 4464 10337 1 Desulfotomaculum genus 1562 0 46 5 4418 species Desulfotomaculum ruminis 1564 0 1 1 0 1833852 Desulfotomaculum ferrireducens species 2356 1 1722 species Desulfotomaculum reducens 0 59610 1 species Desulfotomaculum nigrificans 0 1565 1795 2815 genus 2282742 0 1 1 Desulfotomaculum acetoxidans species 58138 0 2815 16225 1 genus Desulfitobacterium 0 36853 132 5 0 49338 Desulfitobacterium hafniense species 8273 1 0 142877 species Desulfitobacterium metallireducens 1921 1 2851 species Desulfitobacterium dichloroeliminans 233055 0 1 1 Desulfitobacterium dehalogenans species 36854 0 3048 0 538999 no rank 659793 10 3 28 539000 0 family Clostridiales Family XVII. Incertae Sedis 1 6987 0 73918 Thermaerobacter genus 1 6959 2 27 1 73919 0 species Thermaerobacter marianensis 6932 1302 2 393042 1 Intestinimonas genus 0 1392389 1297617 0 species Intestinimonas butyriciproducens 391740 1 2717089 0 genus 250491 1 1 250491 Mordavella sp. Marseille-P3756 species 0 2086584 family Clostridiales Family XIII. Incertae Sedis 543314 0 9273 1 87 4 4555 [Eubacterium] sulci species 0 143393 1 21 2 4631 1 Mogibacterium genus 86331 0 1 4610 0 114527 species Mogibacterium diversum 0 216572 family Oscillospiraceae 1 137778 3 18 1 137760 0 459786 genus Oscillibacter 2 118 0 351091 Oscillibacter valericigenes species 137642 1 3 order 485256 0 1340 1 1340 0 485255 family Natranaerobiaceae 3 5 2 2 1335 1 Natranaerobius genus 375928 0 1 1333 0 375929 species Natranaerobius thermophilus 3 4300 0 2770089 order 2 family 0 2770093 2165 2165 1 Thermosediminibacter genus 291988 0 13 2 1 291990 0 species Thermosediminibacter oceani 2152 2135 2770092 0 family 1 1 499228 0 genus 2135 1 499229 0 Tepidanaerobacter acetatoxydans species 2135 1 160897 909932 0 Negativicutes class 31 133 0 909929 order Selenomonadales 1 46260 14 148 1843491 0 Selenomonadaceae family 1 40641 9 151 6 185 970 0 genus Selenomonas 1 35962 species Selenomonas ruminantium 0 971 11753 1 8437 69823 0 Selenomonas sputigena species 1 3 0 2637378 no rank 15587 1 4425 0 1884263 Selenomonas sp. oral taxon 920 species 5186 species Selenomonas sp. oral taxon 136 713030 0 1 1 Selenomonas sp. oral taxon 478 species 712538 0 5976 2 10 0 158846 Megamonas genus 1 4528 1 Megamonas hypermegale species 158847 0 4518 1843490 0 Sporomusaceae family 1 5471 4 21 15 3 genus Pelosinus 365348 0 5450 1 1 Pelosinus fermentans species 0 365349 3024 2411 2629460 0 no rank 1 1 species Pelosinus sp. UFO1 0 484770 2411 3410 11 order Veillonellales 1843489 0 42155 1 38745 1 family Veillonellaceae 31977 0 3958 10 8827 1 genus Veillonella 29465 0 33 3 1 species Veillonella rodentium 0 248315 3503 5291 Veillonella parvula species 0 29466 1 2 5 1 1766 39948 0 genus Dialister 1 1761 Dialister pneumosintes species 0 39950 genus Megasphaera 0 906 21058 1 2201 2 Megasphaera elsdenii species 0 907 18857 1 3136 1 genus Negativicoccus 0 909928 20 2 Negativicoccus massiliensis species 0 1702287 3116 1 1 72349 0 1843488 Acidaminococcales order 5 188 72161 1 family Acidaminococcaceae 0 909930 167 4 3 177 904 0 genus Acidaminococcus 1 71994 1 56861 187327 0 species Acidaminococcus intestini 1 Acidaminococcus fermentans species 0 905 14956 4481 1 class Limnochordia 1676648 0 40 5 4 41 1676649 0 order Limnochordales 1 4441 family Limnochordaceae 0 1676650 4400 1 25 3 2 93 1676651 0 genus Limnochorda 1 4375 4282 1555112 0 species Limnochorda pilosa 1 1798711 0 clade 121576 153 46 153 121576 1 Cyanobacteria phylum 1117 0 Nostocales order 0 1161 30539 1 74 34 3 29 1185 0 Rivulariaceae family 1 1441 17 2 Rivularia genus 0 373984 1412 1 0 2676603 no rank 1395 1 373994 0 species Rivularia sp. PCC 7116 1395 1 41 18 19440 1 family Nostocaceae 1162 0 13107 1 Nostoc genus 0 1177 331 10 1659 Nostoc punctiforme species 0 272131 1 7 0 2593658 no rank 7773 1038 0 103690 Nostoc sp. PCC 7120 species 1 0 28072 species Nostoc sp. PCC 7524 777 1 1 1398 1869241 0 Nostoc sp. CENA543 species 1 1342 1261031 0 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 1237 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 1618022 0 Nostoc sp. PCC 7107 species 317936 0 636 1 0 1751286 species Nostoc sp. NIES-3756 1345 1 3344 Nostoc flagelliforme species 1306274 0 1 20 3 genus Trichormus 264688 0 3070 1 1 Trichormus variabilis species 0 264691 2133 1 0 1164 Trichormus azollae species 917 1163 0 Anabaena genus 1 3222 4 34 2 2285 2619674 0 no rank 1 46234 0 species Anabaena sp. 90 1108 1177 0 1647413 species Anabaena sp. WA102 1 903 0 1165 species Anabaena cylindrica 1 1146 1219117 0 no rank 1 1 1146 Nostocales cyanobacterium HT-58-2 species 1940762 0 8 7284 family 2661849 0 1 7284 1186 0 Calothrix genus 8 253 6115 2619626 0 no rank 6 1954171 0 Calothrix sp. NIES-2098 species 1223 1 0 2005462 species Calothrix sp. NIES-3974 757 1 0 1337936 species Calothrix sp. 336/3 861 1 1 1276 Calothrix sp. NIES-4071 species 0 2005469 1 Calothrix sp. NIES-4101 species 2005461 0 1280 718 Calothrix sp. PCC 7507 species 0 99598 1 1 916 species Calothrix parietina 32054 0 1 1154 1892263 0 family Hapalosiphonaceae 3 27 1127 1 Fischerella genus 0 1190 10 2 1 1117 0 494603 no rank 1117 species Fischerella sp. NIES-3754 1752063 0 1 0 307596 Gloeobacteria class 1 4595 6 57 1 4538 0 307595 Gloeobacterales order 5 207 27 4 family Gloeobacteraceae 0 1890422 4331 1 33071 0 genus Gloeobacter 1 4304 3 29 1 1903 0 1416614 Gloeobacter kilaueensis species 2372 Gloeobacter violaceus species 33072 0 1 907 0 1890505 order 3 25 3 Chroococcidiopsidaceae family 1890528 0 907 1 6 2 882 1 Chroococcidiopsis genus 0 54298 1 Chroococcidiopsis thermalis species 54299 0 876 26505 subclass 0 1301283 44 19 91 0 1150 Oscillatoriales order 1 11509 57 2 family Gomontiellaceae 0 1892255 995 1 1 938 0 241421 genus 1 0 241425 species Crinalium epipsammum 938 2209 1 family Coleofasciculaceae 0 1892251 18 3 4 2 Geitlerinema genus 63132 0 2191 1 0 2648775 no rank 2187 1 species Geitlerinema sp. PCC 7407 1173025 0 2187 1 6 36 0 1892254 family Oscillatoriaceae 1 4787 3 49 1 3420 1158 0 Oscillatoria genus 1076 Oscillatoria acuminata species 118323 0 1 1 2295 Oscillatoria nigro-viridis species 482564 0 genus Moorea 0 1155738 1331 1 2 2 species Moorea producens 1155739 0 1329 1 1134 1 family Cyanothecaceae 0 1892249 62 3 1072 1 genus Cyanothece 0 43988 78 2 1 994 no rank 2649277 0 994 species Cyanothece sp. PCC 7425 0 395961 1 2293 1 Microcoleaceae family 1892252 0 3 4 1180 genus 0 44471 1 no rank 0 2642155 1180 1 1 1180 1173027 0 species Microcoleus sp. PCC 7113 genus Trichodesmium 1205 0 1110 1 5 2 1105 1206 0 species Trichodesmium erythraeum 1 25 17 1 14996 1118 0 order Chroococcales 3 7 1 1545 0 1890452 Cyanobacteriaceae family 0 102234 genus Cyanobacterium 1 1538 2 6 1532 0 379064 species Cyanobacterium aponinum 1 Chroococcaceae family 0 1890464 4790 1 43 7 6 2 genus Gloeocapsa 0 102231 1861 1 1855 no rank 2623012 0 1 1855 Gloeocapsa sp. PCC 7428 species 0 1173026 1 1 268175 0 genus 812 812 no rank 2648896 0 1 Chondrocystis sp. NIES-4102 species 2005460 0 812 1 3 12 669357 0 Geminocystis genus 1 2074 no rank 0 2625037 2062 2 1 1014 0 1615909 Geminocystis sp. NIES-3708 species 1 1617448 0 species Geminocystis sp. NIES-3709 1048 33 4 Microcystaceae family 0 1890449 2531 1 1125 0 genus Microcystis 1 2498 3 19 934 no rank 0 2643300 1 934 0 1967666 Microcystis sp. MC19 species 1 Microcystis aeruginosa species 1126 0 1545 1 1 6113 0 1890450 Aphanothecaceae family 10 4 2 genus 2546365 0 1714 species 2546366 0 1714 2 1 0 395962 strain Cyanothece sp. PCC 8802 836 878 strain Cyanothece sp. PCC 8801 0 41431 1 1 2 Candidatus Atelocyanobacterium genus 1453359 0 532 1 531 Candidatus Atelocyanobacterium thalassa species 0 713887 1 28070 0 genus 2377 2 1 2546359 0 species 1101 strain Cyanothece sp. PCC 7822 0 497965 1101 1 1 1276 0 2546356 species 0 65393 strain Cyanothece sp. PCC 7424 1276 1 2 804 no rank 0 92682 2 7 1 804 0 76023 genus Halothece 1 no rank 2632878 0 797 797 Halothece sp. PCC 7418 species 65093 0 1 682 genus 0 263510 1 1 2546360 0 species 682 1 43989 0 strain Cyanothece sp. ATCC 51142 682 1 2514 52604 0 order Pleurocapsales 7 8 1759 family 1890498 0 3 0 102115 genus Stanieria 1 1759 3 10 1 Stanieria cyanosphaera species 0 102116 944 805 2642663 0 no rank 1 1 0 1807358 species Stanieria sp. NIES-3757 805 3 1 1890500 0 family Hyellaceae 1 747 2 8 1 746 44474 0 genus Pleurocapsa 1 738 54308 0 Pleurocapsa minor species 1 1983111 0 no rank 633 633 718217 0 cyanobacterium endosymbiont of Epithemia turgida species 1 57 633 1 55837 0 1890424 Synechococcales order 0 1213 family 4311 4 13 4 genus Prochlorococcus 0 1218 4311 1 2 1212 0 2627481 no rank 1 Prochlorococcus sp. MIT 0801 species 1501269 0 750 0 1501268 Prochlorococcus sp. MIT 0604 species 462 1 3086 1219 0 species Prochlorococcus marinus 1 6 42 1 4418 1890438 0 Leptolyngbyaceae family 5 20 1 4376 47251 0 genus Leptolyngbya 1 species Leptolyngbya boryana 0 1184 690 3 3666 no rank 2650499 0 1 880 species Leptolyngbya sp. NIES-3755 1752064 0 1 671 0 111781 Leptolyngbya sp. PCC 7376 species 1 1080068 0 Leptolyngbya sp. O-77 species 2115 34 208 1 35674 0 1890426 family Synechococcaceae 519 26 Synechococcus genus 1129 0 25471 1 23 2626047 0 no rank 23041 548 Synechococcus sp. CC9311 species 0 64471 1 1 Synechococcus sp. PCC 7003 species 0 374981 719 1 species Synechococcus sp. NIES-970 0 1827144 617 1060 Synechococcus sp. UTEX 2973 species 0 1350461 1 1 779 0 166314 species Synechococcus sp. WH 8109 470 Synechococcus sp. PCC 8807 species 0 195248 1 1 Synechococcus sp. SynAce01 species 1916956 0 1719 1 3267 321327 0 species Synechococcus sp. JA-3-3Ab 1 585425 0 species Synechococcus sp. KORDI-52 1210 species Synechococcus sp. KORDI-49 585423 0 1350 1 species Synechococcus sp. KORDI-100 1280380 0 728 1 511 0 32049 Synechococcus sp. PCC 7002 species 1 195253 0 species Synechococcus sp. PCC 6312 539 1 0 1173263 species Synechococcus sp. PCC 7502 482 1 1 0 195498 Synechococcus sp. PCC 7117 species 582 1 940 Synechococcus sp. WH 8102 species 0 84588 1 0 29410 Synechococcus sp. WH 8103 species 878 Synechococcus sp. RCC307 species 316278 0 1306 1 1 Synechococcus sp. CC9605 species 0 110662 1216 0 32051 Synechococcus sp. WH 7803 species 1145 1 1 Synechococcus sp. PCC 73109 species 0 374982 415 316279 0 species Synechococcus sp. CC9902 474 1 1 Synechococcus sp. JA-2-3B'a(2-13) species 0 321332 2086 1 733 Synechococcus lividus species 33070 0 1 1178 32046 0 Synechococcus elongatus species 3 146 167375 0 genus Cyanobium 1 8792 2627006 0 no rank 4283 1 species Cyanobium sp. NIES-981 1851505 0 4283 1 0 59930 Cyanobium gracile species 4363 1 2 2 genus Thermosynechococcus 0 146785 575 1 1 species Thermosynechococcus elongatus 146786 0 573 6 2 Dactylococcopsis genus 13034 0 628 1 1 0 292566 species Dactylococcopsis salina 622 7 3 1162 1 family Pseudanabaenaceae 0 1890436 1155 1 Pseudanabaena genus 0 1152 15 2 1 1140 0 2593292 no rank Pseudanabaena sp. PCC 7367 species 82654 0 1140 1 family 0 2303730 3687 2 1 3687 170610 0 Halomicronema genus 2 39 species Halomicronema hongdechloris 1209493 0 3648 1 2 3471 1890429 0 family 34 2 Acaryochloris genus 0 155977 3471 1 1 155978 0 Acaryochloris marina species 3437 1 2481 0 1890428 family Merismopediaceae 5 5 4 73 1142 0 genus Synechocystis 1 2476 no rank 2640012 0 2403 3 species Synechocystis sp. PCC 6714 0 1147 849 1 1 1148 0 species Synechocystis sp. PCC 6803 777 1 Synechocystis sp. IPPAS B-1465 species 0 2116702 777 no rank 1859062 0 705 1 1 705 genus 262406 0 166501 0 species Thermobaculum terrenum 705 1 32652 phylum 0 544448 99 1 778 no rank 0 2799557 1 genus 1912503 0 778 1 2624196 0 no rank 778 1 Candidatus Izimaplasma sp. HR1 species 1541959 0 778 49 96 Mollicutes class 0 31969 30081 1 13 4 1 4090 186329 0 Acholeplasmatales order 34 12 family Acholeplasmataceae 2146 0 4086 1 5 75 1 3165 0 2147 Acholeplasma genus 883 61635 0 species Acholeplasma brassicae 1 1 Acholeplasma laidlawii species 2148 0 738 826 0 38986 Acholeplasma palmae species 1 643 species Acholeplasma oculi 0 35623 1 6 48 1 887 0 33926 genus Candidatus Phytoplasma 1 species group 85630 0 102 0 37692 species Candidatus Phytoplasma mali 102 1 0 85632 species group 242 1 1 242 Candidatus Phytoplasma australiense species 0 59748 0 85620 species group 495 3 1 Aster yellows witches'-broom phytoplasma species 229545 0 105 1 231 0 100379 Onion yellows phytoplasma species 159 Maize bushy stunt phytoplasma species 0 202462 1 Mycoplasmatales order 2085 0 12618 1 18 43 2092 0 Mycoplasmataceae family 1 12600 42 70 3663 0 2767358 genus 12 259 2110 0 Mycoplasma agalactiae species 1 species Mycoplasma californicum 0 2113 178 1 0 2107 species Mycoplasma pulmonis 306 1 1 308 0 29555 species Mycoplasma canis Mycoplasma bovigenitalium species 0 2112 230 1 48003 0 Mycoplasma pullorum species 234 1 1 697 Mycoplasma bovis species 0 28903 136 species Mycoplasma bovirhinis 0 29553 1 2109 0 species Mycoplasma synoviae 361 1 species Mycoplasma cynos 0 171284 272 1 2094 0 Mycoplasma arginini species 291 1 Mycoplasma fermentans species 0 2115 391 1 167 27 Mycoplasma genus 0 2093 8340 1 1 2099 0 Mycoplasma hyopneumoniae species 518 0 29501 Mycoplasma haemofelis species 137 1 1 184 Mycoplasma bovoculi species 0 45362 248 Mycoplasma flocculare species 0 2128 1 1 198 species Mycoplasma arthritidis 2111 0 1 245 Mycoplasma mobile species 0 2118 656088 0 species group 2096 3 1185 0 2102 species Mycoplasma mycoides 1 1 Mycoplasma capricolum species 0 2095 439 species Mycoplasma leachii 0 2105 472 1 0 51365 species Mycoplasma yeatsii 226 1 1 0 57372 species Mycoplasma suis 157 1 456 Mycoplasma gallisepticum species 2096 0 161 984991 0 species Mycoplasma parvum 1 99 2104 0 species Mycoplasma pneumoniae 1 0 2683645 no rank 235 1 1 235 species Mycoplasma sp. (ex Biomphalaria glabrata) 0 1749074 241 Mycoplasma putrefaciens species 2123 0 1 species Mycoplasma hominis 0 2098 927 1 1 species Mycoplasma wenyonii 65123 0 190 194 species Mycoplasma canadense 29554 0 1 330 2100 0 Mycoplasma hyorhinis species 1 1 227 0 86660 Mycoplasma dispar species 76 0 171632 species Mycoplasma ovis 1 0 50052 species Mycoplasma crocodyli 331 1 1 species Mycoplasma genitalium 2097 0 86 0 136241 species Mycoplasma haemocanis 200 1 411 28227 0 species Mycoplasma penetrans 1 527 genus 0 2129 2 0 134821 Ureaplasma parvum species 223 1 304 0 2130 Ureaplasma urealyticum species 1 23 39 13324 1 Entomoplasmatales order 0 186328 Entomoplasmataceae family 33925 0 3986 1 7 14 8 112 0 46239 genus Mesoplasma 1 2702 1 138853 0 species Mesoplasma lactucae 624 483 225999 0 species Mesoplasma syrphidae 1 232 Mesoplasma chauliocola species 0 216427 1 1 Mesoplasma entomophilum species 2149 0 195 1 267 324078 0 species Mesoplasma coleopterae 1 241 Mesoplasma tabanidae species 219745 0 0 2151 Mesoplasma florum species 548 1 0 46238 genus Entomoplasma 1 1277 5 35 1 223 Entomoplasma somnilux species 215578 0 1 383 Entomoplasma luminosum species 214888 0 473 species Entomoplasma melaleucae 0 81459 1 1 0 74700 species Entomoplasma freundtii 163 1 9315 2131 0 family Spiroplasmataceae 24 9 Spiroplasma genus 0 2132 9306 1 158 23 Spiroplasma atrichopogonis species 1114980 0 338 1 1 371 species Spiroplasma clarkii 0 2139 337 0 2136 species Spiroplasma monobiae 1 1 species Spiroplasma culicicola 0 216935 500 711 0 2133 Spiroplasma citri species 1 species Spiroplasma floricola 216937 0 324 1 0 2637901 no rank 1214 2 607 species Spiroplasma sp. TU-14 0 1898044 1 0 1914410 species Spiroplasma sp. NBRC 100390 607 1 1 0 315358 species Spiroplasma eriocheiris 342 1 472 47834 0 species Spiroplasma kunkelii species Spiroplasma litorale 0 216942 388 1 1 438 Spiroplasma cantharicola species 0 362837 1 216946 0 species Spiroplasma turonicum 499 527 216938 0 Spiroplasma helicoides species 1 1 400 0 216934 Spiroplasma corruscae species 258 0 216945 species Spiroplasma syrphidicola 1 224 species Spiroplasma sabaudiense 216944 0 1 332 Spiroplasma mirum species 2144 0 1 1 404 216933 0 Spiroplasma chrysopicola species Spiroplasma diminutum species 216936 0 241 1 1 610 Spiroplasma taiwanense species 0 2145 1 2137 0 Spiroplasma apis species 218 2 no rank 713063 0 1793 1 Tenericutes bacterium MO-XQ species 1911684 0 983 species Tenericutes bacterium MZ-XQ 0 1911683 810 1 39 phylum 200918 0 17730 39 47 1 17730 188708 0 class Thermotogae 5 6 1 1621 0 1643946 Kosmotogales order 1615 1 family Kosmotogaceae 0 1643948 14 4 genus 1184396 0 587 1 1 587 Mesotoga prima species 0 1184387 2 0 651456 genus 1014 1 651457 0 species Kosmotoga olearia 424 1 590 0 1330330 species Kosmotoga pacifica Petrotogales order 1643947 0 3708 1 2 6 5 family 0 1643949 3706 621 28236 0 genus 1 621 species Petrotoga mobilis 0 69499 1 genus 1511648 0 684 1 1 species Defluviitoga tunisiensis 1006576 0 684 1 2401 160798 0 genus Marinitoga 3 7 1 2640159 0 no rank 1255 1 species Marinitoga sp. 1137 1545835 0 1255 1 species Marinitoga piezophila 0 149715 1139 order Thermotogales 0 2419 12354 1 11 27 4 9 3953 1 family Fervidobacteriaceae 0 1643950 genus 2422 0 1645 3 402 2424 0 Fervidobacterium nodosum species 1 588 2423 0 Fervidobacterium islandicum species 1 1 655 species Fervidobacterium pennivorans 0 93466 genus Thermosipho 2420 0 2304 1 14 5 1 643 species Thermosipho melanesiensis 46541 0 2 869 2676525 0 no rank 0 1437364 species Thermosipho sp. 1070 435 1 1 0 1462747 species Thermosipho sp. 1063 434 species Thermosipho africanus 2421 0 778 1 8390 1 family Thermotogaceae 0 188709 22 17 5 79 1 2491 0 1643951 genus Pseudothermotoga 581 177758 0 Pseudothermotoga lettingae species 1 species Pseudothermotoga thermarum 0 119394 651 1 624 Pseudothermotoga hypogea species 0 57487 1 556 38322 0 Pseudothermotoga elfii species 1 1 5877 2335 0 Thermotoga genus 11 155 1 0 2337 species Thermotoga neapolitana 623 1 555 Thermotoga naphthophila species 93930 0 568 1508420 0 species Thermotoga profunda 1 2096 no rank 2631113 0 4 575 126738 0 species Thermotoga sp. RQ7 1 497 126740 0 species Thermotoga sp. RQ2 1 1 0 1157948 species Thermotoga sp. 2812B 558 466 1157947 0 species Thermotoga sp. Cell2 1 643 0 2336 Thermotoga maritima species 1 530 species Thermotoga petrophila 93929 0 1 1 0 1508419 Thermotoga caldifontis species 707 1224 0 Proteobacteria phylum 1 4933355 2028 1507 68525 0 subphylum 430437 197 class Epsilonproteobacteria 29547 0 141911 1 790 70 139061 1 Campylobacterales order 0 213849 5264 65 0 72294 family Campylobacteraceae 1 119474 41 8988 5 no rank 2321108 0 5072 2321187 0 genus 790 1 790 species Arcobacter sp. LPB0137 0 1850254 1 1 2682 0 28196 genus Arcobacter 3 2 1 1399 species Arcobacter butzleri 28197 0 28199 0 Arcobacter nitrofigilis species 1281 1 no rank 2321207 0 1600 1 1 1600 0 944547 species Arcobacter sp. L 9 32 0 57665 genus Sulfurospirillum 1 4856 66821 0 species Sulfurospirillum multivorans 626 1 1 739 0 194424 Sulfurospirillum halorespirans species 1 438 species Sulfurospirillum barnesii 0 44674 1 0 366522 species Sulfurospirillum cavolei 579 781 65553 0 species Sulfurospirillum deleyianum 1 3 no rank 0 2618290 1661 1 1581011 0 Sulfurospirillum sp. UCH001 species 603 1 species Sulfurospirillum sp. SL2-1 0 1986224 522 1 536 species Sulfurospirillum sp. JPD-1 0 220622 26 1306 0 194 Campylobacter genus 1 100558 41470 species Campylobacter coli 0 195 1 1 Campylobacter cuniculorum species 374106 0 750 1 200 0 Campylobacter curvus species 596 0 206 Campylobacter sputorum species 1214 1 1 824 0 Campylobacter gracilis species 1084 1 694 0 198 Campylobacter hyointestinalis species 1 522485 0 species Campylobacter avium 311 1 197 0 species Campylobacter jejuni 35895 species Campylobacter lari 0 201 1804 1 488546 0 species Campylobacter peloridis 665 1 803 0 76517 species Campylobacter hominis 1 1 Campylobacter pinnipediorum species 1965231 0 656 1 196 0 Campylobacter fetus species 5084 species Campylobacter iguaniorum 0 1244531 523 1 1 990 Campylobacter concisus species 0 199 2610 Campylobacter lanienae species 75658 0 1 species Campylobacter insulaenigrae 260714 0 554 1 4 0 2593542 no rank 1464 1 0 1660076 Campylobacter sp. RM12175 species 391 212 0 1660073 species Campylobacter sp. RM6137 1 1 1660074 0 species Campylobacter sp. RM8964 341 1 0 1500960 species Campylobacter sp. RM16704 520 1 538 species Campylobacter volucris 1031542 0 1 497724 0 species Campylobacter subantarcticus 481 827 0 species Campylobacter ureolyticus 761 1 1 28898 0 Campylobacter helveticus species 305 5 3824 family 2771472 0 2 7 1 1859 269260 0 Nitratifractor genus 1852 species Nitratifractor salsuginis 0 269261 1 Sulfurovum genus 0 265570 1965 1 17 3 1 2646778 0 no rank 942 942 0 387093 Sulfurovum sp. NBC37-1 species 1 1 1006 species Sulfurovum lithotrophicum 206403 0 10 14 7896 1 Helicobacteraceae family 0 72293 1 genus 0 843 537 1 Wolinella succinogenes species 844 0 537 21 12 genus Helicobacter 209 0 7349 1 Helicobacter himalayensis species 1591088 0 282 1 1 0 2593540 no rank 423 0 222136 Helicobacter sp. MIT 01-6242 species 423 1 1 470 species Helicobacter typhlonius 76936 0 1 0 214 species Helicobacter felis 196 3630 210 0 species Helicobacter pylori 1 334 0 213 Helicobacter cinaedi species 1 1 37372 0 species Helicobacter bilis 405 1 603 Helicobacter cetorum species 138563 0 Helicobacter mustelae species 217 0 364 1 1 Helicobacter hepaticus species 0 32025 399 0 212 species Helicobacter acinonychis 222 1 2603 family 0 2771471 4 2 202746 0 genus 1883 1 species Sulfurimonas autotrophica 202747 0 1019 1 Sulfurimonas denitrificans species 0 39766 864 286130 0 Sulfuricurvum genus 1 720 2 1 0 148813 Sulfuricurvum kujiense species 719 1 order Nautiliales 0 235899 2060 1 1 4 1 family 2795691 0 799 1 genus 269258 0 799 1 799 0 2624044 no rank 799 387092 0 species Nitratiruptor sp. SB155-2 1 0 224467 family 1260 2 2 13 1 1260 0 191291 Nautilia genus 1 1247 244787 0 species Nautilia profundicola 127 617 1 288526 0 28221 class Deltaproteobacteria 25 1005 213115 0 Desulfovibrionales order 1 91875 1 7983 213116 0 family Desulfomicrobiaceae 4 91 57 3 7892 1 Desulfomicrobium genus 0 898 3490 0 132132 Desulfomicrobium orale species 1 4345 0 899 Desulfomicrobium baculatum species 1 81259 1 family Desulfovibrionaceae 194924 0 436 17 530 9 60272 1 genus Desulfovibrio 872 0 1 9901 0 44742 species Desulfovibrio fairfieldensis 184917 0 Desulfovibrio magneticus species 5646 1 3615 0 58180 species Desulfovibrio alaskensis 1 Desulfovibrio vulgaris species 881 0 13761 1 1457 Candidatus Desulfovibrio trichonymphae species 1725232 0 1 Desulfovibrio desulfuricans species 876 0 9884 1 3122 0 2593640 no rank 1 3122 0 631220 species Desulfovibrio sp. G11 1 species Desulfovibrio piger 901 0 12356 1 4 138 1 13074 0 2035811 Pseudodesulfovibrio genus 1 4756 Pseudodesulfovibrio aespoeensis species 182210 0 1 57320 0 Pseudodesulfovibrio profundus species 2110 1 6070 1716143 0 Pseudodesulfovibrio indicus species 1 2348 0 2794998 genus 0 880 Desulfovibrio salexigens species 2348 1 1 41707 0 genus 1362 1 1362 Lawsonia intracellularis species 29546 0 3767 2582840 0 genus 1 1 3767 Desulfovibrio africanus species 0 873 213117 0 family Desulfohalobiaceae 1 1628 3 9 Desulfohalobium genus 45662 0 1619 1 10 2 1 1609 Desulfohalobium retbaense species 0 45663 6014 1 Syntrophobacterales order 0 213462 88 10 18 3 1861 1 family Syntrophobacteraceae 213465 0 2 11 1 1843 29526 0 genus Syntrophobacter 1832 0 119484 species Syntrophobacter fumaroxidans 1 1 4065 213468 0 Syntrophaceae family 6 14 2 4 1 1102 2357 0 genus Desulfomonile 2358 0 species Desulfomonile tiedjei 1098 1 1 1362 genus 0 60892 0 60893 species Desulfobacca acetoxidans 1362 1 0 43773 genus Syntrophus 1 1587 2 38 1 0 316277 Syntrophus aciditrophicus species 1549 Myxococcales order 29 0 100213 1 1261 38 16323 suborder 0 80812 8 3105 1 family Sandaracinaceae 0 1055686 15 3 1 3090 1055688 0 Sandaracinus genus 2 81 1 3009 927083 0 species Sandaracinus amylolyticus 1 13218 0 49 family Polyangiaceae 5 130 80 2 10156 1 Sorangium genus 39643 0 1 0 56 Sorangium cellulosum species 10076 Chondromyces genus 0 50 2932 1 6 2 2926 0 52 Chondromyces crocatus species 1 26 suborder 80811 0 77717 0 1524215 family Anaeromyxobacteraceae 1 14060 5 123 1 13937 161492 0 genus Anaeromyxobacter 4 271 6839 0 161493 species Anaeromyxobacter dehalogenans 1 6827 no rank 2620896 0 2 2966 species Anaeromyxobacter sp. Fw109-5 404589 0 1 1 447217 0 Anaeromyxobacter sp. K species 3861 298 9 38766 1 Myxococcaceae family 0 31 1 25289 32 0 genus Myxococcus 5 869 0 33 species Myxococcus fulvus 10612 1 1297742 0 species Myxococcus hansupus 4845 1 1 4552 species Myxococcus xanthus 34 0 1 4411 species Myxococcus stipitatus 0 83455 3 137 1 13179 83461 0 Corallococcus genus 6050 35 0 species Myxococcus macrosporus 1 6992 184914 0 Corallococcus coralloides species 1 20 3 2685 1 Vulgatibacteraceae family 1524213 0 55 2 2665 1 genus Vulgatibacter 0 1524214 1 Vulgatibacter incomptus species 1391653 0 2610 9 345 1 22206 0 39 family Archangiaceae 40 0 Stigmatella genus 1 4603 2 40 0 41 species Stigmatella aurantiaca 4563 1 2 52 1 5189 0 44 genus Melittangium 1 5137 Melittangium boletus species 0 83453 47 0 Archangium genus 1 6319 2 25 species Archangium gephyra 0 48 6294 1 2 15 1 5750 42 0 Cystobacter genus 1 Cystobacter fuscus species 0 43 5735 3 suborder 224462 0 4912 3 47 0 224464 Kofleriaceae family 1 4912 genus Haliangium 0 162027 4865 1 78 2 0 80816 Haliangium ochraceum species 4787 1 317 19 order Desulfobacterales 213118 0 22436 1 9 67 1 9802 213121 0 Desulfobulbaceae family 4346 1 Desulfurivibrio genus 427922 0 25 2 1 4321 Desulfurivibrio alkaliphilus species 427923 0 1021 1 Desulfotalea genus 0 109168 4 2 1017 84980 0 species Desulfotalea psychrophila 1 0 893 genus Desulfobulbus 1 3129 2 23 3106 Desulfobulbus sp. ORNL species 0 1986146 1 6 2 Desulfocapsa genus 53318 0 1239 1 species Desulfocapsa sulfexigens 0 65555 1233 1 9 46 1 12317 0 213119 family Desulfobacteraceae 1 0 28222 genus 1394 species Desulfobacula toluolica 28223 0 1394 1 2 16 1 2770 218207 0 Desulfatibacillum genus 0 259354 species Desulfatibacillum alkenivorans 2754 1 6315 1 Desulfococcus genus 0 896 30 3 2734 Desulfococcus multivorans species 897 0 1 0 181663 Desulfococcus oleovorans species 3551 1 2 1 0 2295 Desulfobacterium genus 1 1792 0 2296 Desulfobacterium autotrophicum species 1791 1 6 1 213113 0 Desulfurellales order 1 1651 1650 1 Desulfurellaceae family 0 117942 3 5 1 551 0 84404 Hippea genus 2 1 550 0 84405 Hippea maritima species 1 2 9 1 1096 33001 0 genus Desulfurella 1087 0 33002 species Desulfurella acetivorans 1 24 780 1 58734 69541 0 Desulfuromonadales order 0 213421 Desulfuromonadaceae family 1 19223 9 206 11198 1 Pelobacter genus 0 18 96 5 no rank 2620299 0 1715 1 1 1715 0 1842532 Pelobacter sp. SFB93 species 2176 0 19 species Pelobacter carbinolicus 1 0 29543 species Pelobacter propionicus 4760 1 1 2451 species Pelobacter acetylenicus 29542 0 0 890 Desulfuromonas genus 1 7819 3 74 no rank 0 2614637 3491 1 3491 0 1823759 Desulfuromonas sp. DDH964 species 1 0 1603606 species Desulfuromonas soudanensis 4254 1 1 38731 0 213422 Geobacteraceae family 14 297 17 2 2443 1 genus Geoalkalibacter 392332 0 2426 483547 0 species Geoalkalibacter subterraneus 1 539 11 35991 1 genus Geobacter 0 28231 4086 species Geobacter bemidjiensis 225194 0 1 3675 0 345632 Geobacter pickeringii species 1 313985 0 Geobacter lovleyi species 2785 1 1 1340425 0 species Geobacter anodireducens 3727 2 9091 no rank 0 2627627 1 5095 443143 0 species Geobacter sp. M18 1 species Geobacter sp. M21 0 443144 3996 Geobacter daltonii species 1203471 0 2266 1 3394 Geobacter uraniireducens species 351604 0 1 1 3582 species Geobacter metallireducens 28232 0 1 2846 0 35554 species Geobacter sulfurreducens 99 4 order Desulfarculales 0 453227 6986 1 3 162 1 6887 0 453228 family Desulfarculaceae 453229 0 Desulfarculus genus 1 6725 2 30 Desulfarculus baarsii species 0 453230 6695 1 1 659006 28216 0 class Betaproteobacteria 353 1584 44 248 1 24161 0 32003 Nitrosomonadales order family Methylophilaceae 32011 0 5414 1 89 14 0 16 Methylophilus genus 1 883 2 53 1 no rank 2630143 0 830 0 1662285 species Methylophilus sp. TWE2 830 1 8 2 genus Methylobacillus 0 404 811 1 Methylobacillus flagellatus species 0 405 803 1 81682 0 genus Methylovorus 1 2159 3 23 no rank 2634027 0 1072 1 species Methylovorus sp. MP688 0 887061 1072 1 1064 Methylovorus glucosotrophus species 0 266009 1 1 853 0 359407 Methylotenera genus 3 10 314 0 1055487 species Methylotenera versatilis 1 1 359408 0 species Methylotenera mobilis 529 619 1 genus Candidatus Methylopumilus 1679002 0 1 3 1 0 1581557 Candidatus Methylopumilus planktonicus species 268 0 1581680 species Candidatus Methylopumilus turicensis 350 1 4 2772226 0 family 2373 3 2 1186 1 Sulfuriferula genus 0 1778653 2637784 0 no rank 1183 1 1183 Sulfuriferula sp. AH1 species 1985873 0 1 1187 1 Sulfuricella genus 935200 0 14 2 1173 0 649841 Sulfuricella denitrificans species 1 family Gallionellaceae 0 90627 3027 1 119 5 1883 1 Sideroxydans genus 0 314343 51 2 1 Sideroxydans lithotrophicus species 63745 0 1832 2 21 96 0 Gallionella genus 1 1025 1 1004 370405 0 Gallionella capsiferriformans species 5 99 0 2008793 family Sterolibacteriaceae 1 4523 1 2586 1054211 0 Sulfuritalea genus 2 46 0 748811 species Sulfuritalea hydrogenivorans 2540 1 0 378210 Methyloversatilis genus 1 1838 2 34 1 1804 2639971 0 no rank 1804 1842540 0 Methyloversatilis sp. RAC08 species 1 3 26 0 2008790 Thiobacillaceae family 1 1641 55 2 1615 1 genus Thiobacillus 0 919 1 species Thiobacillus denitrificans 0 36861 1560 1 6935 0 206379 family Nitrosomonadaceae 12 67 4 27 1 2146 0 35798 genus Nitrosospira 1288494 0 species Nitrosospira lacus 620 1 species Nitrosospira multiformis 1231 0 934 1 0 35799 Nitrosospira briensis species 565 1 genus Nitrosomonas 914 0 4722 1 47 7 603 Nitrosomonas eutropha species 0 916 1 1 770 0 44574 Nitrosomonas communis species 2 2609265 0 no rank 1245 671 0 261292 Nitrosomonas sp. Is79A3 species 1 species Nitrosomonas sp. AL212 0 153948 574 1 1 Nitrosomonas ureae species 0 44577 829 1 species Nitrosomonas europaea 0 915 1228 2583 no rank 33809 0 2 543913 0 beta proteobacterium CB species 402 1 0 1904640 Betaproteobacteria bacterium GR16-43 species 2181 1 35394 1 order Rhodocyclales 206389 0 733 22 3 26 1 1965 2008795 0 Azonexaceae family 0 73029 Dechloromonas genus 1 1939 2 26 1 1913 Dechloromonas aromatica species 0 259537 673 12 Zoogloeaceae family 2008794 0 23516 1 0 12960 genus Azoarcus 1 8755 5 344 1 1889 2067960 0 Azoarcus sp. SY39 species 2 4363 no rank 2629479 0 0 198107 species Azoarcus sp. CIB 2447 1 1 1916 species Azoarcus sp. KH32C 0 748247 species Azoarcus olearius 418699 0 2159 1 6 266 33057 0 genus Thauera 1 14088 2 6738 no rank 2609274 0 1 3493 species Thauera sp. K11 2005884 0 1 Thauera sp. MZ1T species 85643 0 3245 0 96773 species Thauera chlorobenzoica 2249 1 1 species Thauera humireducens 1134435 0 2667 1 species Thauera aromatica 59405 0 2168 6 194 1 9180 75787 0 family Rhodocyclaceae 99 2 5324 1 genus Azospira 0 146937 1 species Azospira oryzae 146939 0 5225 Aromatoleum genus 0 551759 1812 1 43 2 1769 0 551760 species Aromatoleum aromaticum 1 75788 0 no rank 1850 1 0 1898103 species Rhodocyclaceae bacterium 1850 1 236 6858 80840 0 order Burkholderiales 1 540109 31037 no rank 0 224471 17 0 28067 genus Rubrivivax 1 4158 2 143 species Rubrivivax gelatinosus 28068 0 4015 1 1 3201 0 318147 Paucibacter genus 2 103 1 no rank 2642959 0 3098 1 3098 0 1768242 Paucibacter sp. KCTC 42545 species 93681 0 genus Roseateles 1 4443 2 161 1 Roseateles depolymerans species 0 76731 4282 genus Leptothrix 0 88 3106 1 116 2 34029 0 Leptothrix cholodnii species 2990 1 98 2 genus Methylibium 0 316612 2692 1 105560 0 species Methylibium petroleiphilum 2594 1 1 species [Polyangium] brachysporum 413882 0 3031 2 273 1 3599 65047 0 Mitsuaria genus 1 3326 2648776 0 no rank 0 1658665 species Mitsuaria sp. 7 3326 1 163 2 3300 1 genus Rhizobacter 0 212743 1 Rhizobacter gummiphilus species 946333 0 3137 132 2 genus Thiomonas 0 32012 3507 1 1 species Thiomonas intermedia 926 0 3375 1 194719 0 119060 family Burkholderiaceae 84 1594 3 4 1125 1 genus Polynucleobacter 44013 0 1 394 0 1835254 species Polynucleobacter duraquae 481 0 576611 species Polynucleobacter asymbioticus 1 247 species Polynucleobacter necessarius 576610 0 1 106589 0 genus Cupriavidus 1 30555 9 1128 species Cupriavidus necator 0 106590 5456 1 no rank 2640874 0 8511 2 1 species Cupriavidus sp. USMAA2-4 0 876364 4338 4173 Cupriavidus sp. USMAHM13 species 1389192 0 1 1 4104 0 367825 species Cupriavidus sp. USMAA1020 1 species Cupriavidus gilardii 0 82541 2813 1 3210 Cupriavidus metallidurans species 0 119219 2188 248026 0 Cupriavidus pinatubonensis species 1 68895 0 species Cupriavidus basilensis 3145 1 48736 0 Ralstonia genus 1 21659 5 535 1 190721 0 Ralstonia insidiosa species 3272 1 species Ralstonia solanacearum 0 305 10524 1 105219 0 species Ralstonia mannitolilytica 2810 1 4518 Ralstonia pickettii species 0 329 477 12 Paraburkholderia genus 0 1822464 25358 1 species Paraburkholderia caribensis 0 75105 2939 1 2294 0 311230 Paraburkholderia terrae species 1 1 2030 261302 0 Paraburkholderia phytofirmans species 1 species Paraburkholderia hospita 0 169430 2612 1 Paraburkholderia aromaticivorans species 0 2026199 2466 Paraburkholderia sprentiae species 0 948107 2122 1 1873 252970 0 species Paraburkholderia phenoliruptrix 1 no rank 2615204 0 1440 1 Paraburkholderia sp. SOS3 species 1926494 0 1440 1 0 134537 Paraburkholderia fungorum species 2081 1 2472 0 148447 species Paraburkholderia phymatum 1 1 2552 species Paraburkholderia xenovorans 0 36873 1 2050 genus 1827195 0 1 2050 Burkholderia sp. RPE64 species 758793 0 1 genus 0 2571159 893 893 Paraburkholderia rhizoxinica species 412963 0 1 Pandoraea genus 0 93217 15742 1 459 10 1 Pandoraea oxalativorans species 573737 0 1669 1560 species Pandoraea thiooxydans 445709 0 1 1 1487 species Pandoraea apista 93218 0 1 1564 656179 0 Pandoraea faecigallinarum species Pandoraea pulmonicola species 93221 0 1558 1 2029 0 656178 species Pandoraea vervacti 1 2109 0 93220 species Pandoraea pnomenusa 1 1 0 93219 Pandoraea norimbergensis species 1622 1685 Pandoraea sputorum species 0 93222 1 95743 1 genus Burkholderia 32008 0 5337 41 1 5806 species Burkholderia gladioli 28095 0 337 0 Burkholderia glumae species 4007 1 2613784 0 no rank 17103 11 1153 0 1740162 Burkholderia sp. Bp5365 species 1 1 1655 1678678 0 species Burkholderia sp. HB1 Burkholderia sp. 2002721687 species 1468409 0 1189 1 758796 0 species Burkholderia sp. RPE67 2396 1 1338 species Burkholderia sp. PAMC 28687 0 1795874 1 1 1370 species Burkholderia sp. Bp7605 1740163 0 1 1340 1795043 0 species Burkholderia sp. PAMC 26561 1596 640512 0 Burkholderia sp. CCGE1003 species 1 1126 0 416344 Burkholderia sp. KJ006 species 1 1 0 1097668 Burkholderia sp. YI23 species 2286 species Burkholderia sp. CCGE1001 640510 0 1654 1 111527 0 species group 13875 7 1 1365 species Burkholderia mallei 13373 0 species Burkholderia sp. MSMB0266 0 1637837 1232 1 1 1742 species Burkholderia oklahomensis 0 342113 0 1637841 Burkholderia sp. MSMB0852 species 1206 1 1 1083 1637831 0 species Burkholderia sp. MSMB617WGS 1 0 28450 Burkholderia pseudomallei species 4010 1 3237 57975 0 Burkholderia thailandensis species 0 41899 species Burkholderia plantarii 2186 1 47429 species group 87882 0 19 1 0 488446 Burkholderia latens species 1444 1 Burkholderia stagnalis species 0 1503054 1455 1 7528 0 95486 species Burkholderia cenocepacia 1 0 1207504 Burkholderia pseudomultivorans species 1662 1 [Pseudomonas] mesoacidophila species 265293 0 1279 species Burkholderia stabilis 95485 0 2786 1 1 Burkholderia ubonensis species 0 101571 4364 1 1183 0 1503055 species Burkholderia territorii 1 Burkholderia seminalis species 488731 0 1350 1 0 60552 Burkholderia vietnamiensis species 2015 488732 0 species Burkholderia diffusa 1349 1 1018 488729 0 Burkholderia metallica species 1 1175 152500 0 species Burkholderia dolosa 1 0 60550 Burkholderia pyrrocinia species 1254 1 1 8133 0 292 Burkholderia cepacia species 3321 Burkholderia multivorans species 0 87883 1 1 488447 0 species Burkholderia contaminans 1507 species Burkholderia ambifaria 152480 0 1946 1 0 482957 species Burkholderia lata 2660 1 family Alcaligenaceae 0 506 104885 1 852 44 2 2 1 583 0 90243 Oligella genus 581 90245 0 species Oligella urethralis 1 861 1 genus Taylorella 29574 0 4 3 84590 0 Taylorella asinigenitalis species 478 1 1 0 29575 Taylorella equigenitalis species 379 0 517 Bordetella genus 1 46047 17 1624 1 3205 Bordetella genomosp. 13 species 463040 0 1430 0 521 Bordetella avium species 1 1331258 0 Bordetella pseudohinzii species 2862 1 species Bordetella genomosp. 9 1416803 0 2514 1 518 0 species Bordetella bronchiseptica 5736 1 1 1078 Bordetella holmesii species 0 35814 1 species Bordetella trematum 123899 0 2290 1 2413 94624 0 Bordetella petrii species 2461 0 2630031 no rank 1 0 1697043 Bordetella sp. H567 species 2461 1 1 3171 species Bordetella bronchialis 463025 0 1 Bordetella parapertussis species 519 0 2955 3083 463024 0 Bordetella genomosp. 6 species 1 3223 1416806 0 species Bordetella genomosp. 8 1 1 species Bordetella flabilis 463014 0 2284 1 0 103855 Bordetella hinzii species 3258 Bordetella pertussis species 520 0 2460 1 108 2 3355 1 Castellaniella genus 0 359336 3247 75697 0 species Castellaniella defragrans 1 Achromobacter genus 222 0 40441 1 1432 6 6440 species Achromobacter spanius 217203 0 1 3487 0 217204 species Achromobacter insolitus 1 1 species Achromobacter xylosoxidans 0 85698 16149 8547 0 32002 species Achromobacter denitrificans 1 no rank 0 2626865 4386 1 1 Achromobacter sp. AONIH1 species 0 1758194 4386 1331 1 genus Pusillimonas 0 305976 6 2 1325 2640016 0 no rank 1 1 1325 species Pusillimonas sp. T7-7 1007105 0 28 3 3002 1 Advenella genus 0 290425 310575 0 Advenella kashmirensis species 1261 1 1713 0 302406 Advenella mimigardefordensis species 1 0 1921582 Orrella genus 1 4199 2 122 1 1851544 0 Orrella dioscoreae species 4077 0 507 Alcaligenes genus 1 3350 2 21 1 3329 Alcaligenes faecalis species 511 0 1472344 0 genus Basilea 1 434 2 9 425 Basilea psittacipulmonis species 0 1472345 1 2 2 Paenalcaligenes genus 0 1100891 430 1 428 643674 0 species Paenalcaligenes hominis 1 59 2535 0 80864 Comamonadaceae family 1 133038 2 3977 genus 2490452 0 1458426 0 species Comamonadaceae bacterium B1 1883 1 1 0 1458425 species Comamonadaceae bacterium A1 2094 2 20 1 829 0 1436289 Candidatus Symbiobacter genus 809 species Candidatus Symbiobacter mobilis 1436290 0 1 1 8500 0 28065 genus Rhodoferax 5 101 1 1842727 0 Rhodoferax koreense species 3010 1876 Rhodoferax antarcticus species 81479 0 1 1583 Rhodoferax ferrireducens species 0 192843 1 1 1930 1484693 0 species Rhodoferax saidenbachensis 3735 1 Alicycliphilus genus 0 201096 28 2 0 179636 Alicycliphilus denitrificans species 3707 1 21 3 2206 1 genus Limnohabitans 0 665874 no rank 0 2626134 2185 2 1 730 species Limnohabitans sp. 103DPR2 0 1678129 1 0 1678128 species Limnohabitans sp. 63ED37-2 1455 genus Ramlibacter 174951 0 6947 1 45 2 1 6902 Ramlibacter tataouinensis species 94132 0 595 5 18743 1 Delftia genus 80865 0 1 4822 0 80866 Delftia acidovorans species 4534 180282 0 Delftia tsuruhatensis species 1 8792 2613839 0 no rank 2 1 742013 0 species Delftia sp. Cs1-4 4399 1 1920191 0 Delftia sp. HK171 species 4393 1 5166 52972 0 genus Polaromonas 3 83 1 2808 species Polaromonas naphthalenivorans 0 216465 no rank 2638319 0 2275 1 1 2275 296591 0 Polaromonas sp. JS666 species 899 9 23548 1 genus Acidovorax 12916 0 80869 0 species Acidovorax citrulli 2858 1 3492 species Acidovorax avenae 0 80867 1 11592 2684926 0 no rank 4 1 2016 Acidovorax sp. T1 species 0 1858609 3205 Acidovorax sp. JS42 species 0 232721 1 0 1842533 Acidovorax sp. RAC01 species 2771 1 species Acidovorax sp. KKS102 0 358220 3600 1 1 species Acidovorax ebreus 721785 0 2548 1 Acidovorax sp. NA3 species 0 553814 2159 2 36 238749 0 Diaphorobacter genus 1 3071 3035 Diaphorobacter polyhydroxybutyrativorans species 0 1546149 1 3050 genus 0 2678886 1 3050 Melaminivora sp. SC2-7 species 2116657 0 1 3 43 1 5123 0 219181 genus Ottowia 2109914 0 species Ottowia sp. KADR8-3 2653 1 no rank 0 2645081 2427 1 1 2427 species Ottowia sp. oral taxon 894 1658672 0 99 4 10935 1 genus Comamonas 283 0 1 2655 0 1082851 species Comamonas serinivorans 1 2680 species Comamonas kerstersii 0 225992 1 5501 Comamonas testosteroni species 0 285 2 110 1 3063 0 1649468 genus Melaminivora 2953 no rank 2641902 0 1 1 2109913 0 species Melaminivora sp. SC2-9 2953 1452 1 genus Simplicispira 0 352450 9 2 1 species Simplicispira sp. SC1-8 0 2109915 1443 14 2 genus Verminephrobacter 0 364316 2475 1 2461 364317 0 species Verminephrobacter eiseniae 1 47420 0 Hydrogenophaga genus 1 8019 4 161 5973 0 2610897 no rank 2 3316 Hydrogenophaga sp. PBC species 795665 0 1 1 2657 0 1842537 Hydrogenophaga sp. RAC07 species 1 1885 Hydrogenophaga crassostreae species 1763535 0 5 348 1 19664 0 34072 Variovorax genus 0 436515 Variovorax boronicumulans species 3995 1 0 663243 no rank 6237 2 1 Variovorax sp. PMC12 species 2126319 0 4242 1795631 0 species Variovorax sp. PAMC 28711 1995 1 0 34073 species Variovorax paradoxus 9084 1 529 29 62756 1 family Oxalobacteraceae 0 75682 genus Collimonas 0 202907 9135 1 130 4 3126 279058 0 species Collimonas arenae 1 2990 species Collimonas fungivorans 0 158899 1 2889 0 279113 species Collimonas pratensis 1 7 217 0 29580 genus Janthinobacterium 1 13491 Janthinobacterium agaricidamnosum species 0 55508 2243 1 1 2946 species Janthinobacterium svalbardensis 368607 0 8085 2610881 0 no rank 4 1 1132 0 375286 Janthinobacterium sp. Marseille species 1 0 1644131 species Janthinobacterium sp. 1_2014MBL_MicDiv 3529 1 2631 Janthinobacterium sp. LM6 species 0 1938606 793 species Janthinobacterium sp. B9-8 0 1236179 1 1847 1 genus Herminiimonas 303379 0 38 3 1 Herminiimonas arsenitoxidans species 1809410 0 859 1 species Herminiimonas arsenicoxydans 204773 0 950 2 13 1 2706 0 846 genus Oxalobacter species Oxalobacter formigenes 847 0 2693 1 0 963 genus Herbaspirillum 1 17257 6 508 1 1871 no rank 0 2624150 1 1871 0 2025949 species Herbaspirillum sp. meg3 species Herbaspirillum frisingense 92645 0 4287 1 1 species Herbaspirillum hiltneri 0 341045 2233 0 964 species Herbaspirillum seropedicae 5114 1 Herbaspirillum rubrisubalbicans species 80842 0 3244 1 Massilia genus 149698 0 17791 1 471 6 no rank 2609279 0 7376 2 3364 0 1707785 Massilia sp. WG5 species 1 0 1678028 Massilia sp. NR 4-1 species 4012 1 3714 Massilia sp. ZMN-3 species 2072590 0 1 2045208 0 Massilia sp. B2 species 3096 1 3134 0 1141883 Massilia putida species 1 2 0 80841 no rank 6816 1 0 1834205 Burkholderiales bacterium YL45 species 5658 Burkholderiales bacterium GJ-E10 species 1469502 0 1158 1 37 667 206351 0 order Neisseriales 1 51681 1 26253 481 0 Neisseriaceae family 23 207 Vitreoscilla genus 59 0 2023 1 110 3 1 354 2627922 0 no rank Vitreoscilla sp. C1 species 96942 0 354 1 1559 species Vitreoscilla filiformis 0 63 1 2 18 0 538 genus Eikenella 1 2213 2195 species Eikenella corrodens 539 0 1 3 2 829 1 Snodgrassella genus 0 1193515 0 1196083 species Snodgrassella alvi 826 1 no rank 421605 0 436 1 0 2052837 species Neisseriaceae bacterium DSM 100970 436 1 12 390 1 20176 482 0 Neisseria genus 1 Neisseria lactamica species 0 486 1927 species Neisseria meningitidis 487 0 3897 1 495 0 species Neisseria elongata 1390 1 species Neisseria sicca 0 490 1167 1 1670 Neisseria zoodegmatis species 326523 0 1 1 1707 485 0 Neisseria gonorrhoeae species 2 0 2623750 no rank 3466 1 Neisseria sp. KEM232 species 655307 0 2417 1 1049 species Neisseria sp. 10022 1853276 0 2137 1853278 0 species Neisseria sp. 10023 1 1 1308 Neisseria mucosa species 488 0 species Neisseria weaveri 28091 0 1117 1 2 1 1 369 71 0 genus Simonsiella 1 368 0 72 species Simonsiella muelleri Chromobacteriaceae family 0 1499392 24761 1 386 13 0 168470 genus Laribacter 1 2622 2 27 1 168471 0 Laribacter hongkongensis species 2595 13604 no rank 0 90153 4 1 13604 0 535 Chromobacterium genus 4 288 Chromobacterium violaceum species 536 0 4199 1 1108595 0 species Chromobacterium vaccinii 5365 1 1 0 2641838 no rank 3752 1 3752 2059672 0 species Chromobacterium sp. ATCC 53434 2 16 885864 0 Jeongeupia genus 1 2171 2619593 0 no rank 2155 1 Jeongeupia sp. USM3 species 0 1906741 2155 1 2 61 0 568394 genus Pseudogulbenkiania 1 3165 no rank 2642558 0 3104 1 748280 0 species Pseudogulbenkiania sp. NH8B 3104 1 20 2 genus Aquaspirillum 187 0 2813 1 1 2793 2620219 0 no rank 2793 Aquaspirillum sp. LM1 species 0 1938604 1 119066 0 no rank 3494 11 302 genus 0 1381133 1 302 0 669502 Candidatus Profftella armatura species 1 48 6 Kinetoplastibacterium genus 0 33055 995 1 0 33056 species Candidatus Kinetoplastibacterium crithidii 212 1 1 0 994696 species Candidatus Kinetoplastibacterium oncopeltii 99 198 species Candidatus Kinetoplastibacterium galatii 0 994695 1 1 994692 0 Candidatus Kinetoplastibacterium desouzaii species 300 1 138 Kinetoplastibacterium blastocrithidii species 0 233181 1 1301080 0 genus 187 1160784 0 species Candidatus Nasuia deltocephalinicola 187 1 63 2 2000 1 genus Candidatus Accumulibacter 327159 0 1 1937 Candidatus Accumulibacter phosphatis species 327160 0 genus 189384 0 10 1 1 species Candidatus Tremblaya princeps 0 189385 10 1 3793 0 1807140 class Acidithiobacillia 7 5 3788 1 Acidithiobacillales order 225057 0 69 6 225058 0 family Acidithiobacillaceae 1 3719 5 4 3715 1 genus Acidithiobacillus 0 119977 52 4 1198 species Acidithiobacillus caldus 0 33059 1 1 1101 species Acidithiobacillus ferrivorans 0 160808 1 920 0 Acidithiobacillus ferrooxidans species 1364 Gammaproteobacteria class 0 1236 3084410 1 3539 890 11 20 order Legionellales 0 118969 8691 1 7879 1 family Legionellaceae 0 444 9 14 Legionella genus 445 0 7570 1 5 12 388 Legionella clemsonensis species 1867846 0 1 1 2005262 0 species Legionella endosymbiont of Polyplax serrata 188 1 539 species Legionella fallonii 96230 0 0 449 species Legionella hackeliae 893 1 476 species Legionella longbeachae 450 0 1 1 Legionella spiritensis species 452 0 548 1 944 species Legionella sainthelensi 0 28087 1 299 0 29423 species Legionella oakridgensis 446 0 Legionella pneumophila species 2547 1 380 Legionella waltersii species 0 66969 1 1 Legionella lansingensis species 0 45067 363 465 0 genus 300 1 Tatlockia micdadei species 0 451 300 1 family Coxiellaceae 0 118968 801 1 12 5 313 0 134284 no rank 1 313 species Coxiella-like endosymbiont 1592897 0 1 3 1 1 476 0 776 Coxiella genus 1 species Coxiella burnetii 0 777 386 no rank 2676648 0 89 1 1 0 325775 Coxiella endosymbiont of Amblyomma americanum species 89 order Xanthomonadales 0 135614 119553 1 1140 53 14 339 1 20679 1775411 0 Rhodanobacteraceae family 2139 1 Frateuria genus 0 70411 7 2 1 2132 81475 0 species Frateuria aurantia 1 genus 2233801 0 1084 1 1084 Xanthomonadales bacterium D13 species 2021234 0 0 75309 Rhodanobacter genus 1 3230 2 73 0 666685 Rhodanobacter denitrificans species 3157 1 4 168 1 8962 231454 0 genus Dyella 1 Dyella japonica species 0 231455 3150 0 1379159 Dyella jiangningensis species 2279 1 1 species Dyella thiooxydans 445710 0 3365 1 2061 242605 0 Luteibacter genus 2 23 1 Luteibacter rhizovicinus species 0 242606 2038 2 42 1 2864 0 323413 genus Dokdonella 1 323415 0 species Dokdonella koreensis 2822 38 1355 32033 0 family Xanthomonadaceae 1 97734 1 1463 genus 0 2370 1463 2371 0 Xylella fastidiosa species 1 9 890 1 33984 40323 0 Stenotrophomonas genus 4665 Stenotrophomonas acidaminiphila species 0 128780 1 1 14524 species group 0 995085 1 Stenotrophomonas maltophilia species 40324 0 14524 4 0 196198 no rank 9128 0 2005046 species Stenotrophomonas sp. WZN-1 2365 1 2424 Stenotrophomonas sp. KCTC 12332 species 1793721 0 1 1 2044 1827305 0 Stenotrophomonas sp. MYb57 species 2295 Stenotrophomonas sp. LM091 species 1904944 0 1 1 2272 Stenotrophomonas nitritireducens species 0 83617 216778 0 species Stenotrophomonas rhizophila 2505 1 5 213 0 68 genus Lysobacter 1 12270 1 3497 435897 0 Lysobacter capsici species 1 0 84531 Lysobacter antibioticus species 2833 262324 0 species Lysobacter gummosus 2781 1 1 species Lysobacter enzymogenes 0 69 2946 37987 1 Xanthomonas genus 338 0 2367 17 1 3052 0 347 Xanthomonas oryzae species 1 0 442694 Xanthomonas perforans species 1779 3142 Xanthomonas sacchari species 0 56458 1 5812 Xanthomonas campestris species 339 0 1 1 1194 1985254 0 Xanthomonas phaseoli species 1301 Xanthomonas euvesicatoria species 0 456327 1 1 0 56460 species Xanthomonas vesicatoria 2026 1154 Xanthomonas vasicola species 56459 0 1 3724 Xanthomonas translucens species 343 0 1 species group 0 643453 6333 2 1 0 346 Xanthomonas citri species 4718 1615 366648 0 Xanthomonas fuscans species 1 1 1319 0 366650 Xanthomonas alfalfae species 1181 29447 0 species Xanthomonas albilineans 1 Xanthomonas hortorum species 56454 0 1444 1 1 species Xanthomonas fragariae 48664 0 1039 1 1120 species Xanthomonas axonopodis 53413 0 genus Pseudoxanthomonas 83618 0 8746 1 124 3 415229 0 Pseudoxanthomonas spadix species 2681 1 5941 Pseudoxanthomonas suwonensis species 314722 0 1 1929 1 genus Luteimonas 83614 0 13 2 0 2006110 species Luteimonas sp. 100111 1916 1 62242 1 order Oceanospirillales 0 135619 771 69 13 6 1756 1 family Kangiellaceae 1920240 0 Kangiella genus 261963 0 1743 1 36 5 601 0 1561924 Kangiella profundi species 1 Kangiella sediminilitoris species 1144748 0 458 1 1 405 261964 0 Kangiella koreensis species 1 243 species Kangiella geojedonensis 914150 0 1 679 0 191033 Oleiphilaceae family 3 4 2 5 1 675 0 141450 genus Oleiphilus 1 670 0 141451 Oleiphilus messinensis species 9 64 224372 0 Alcanivoracaceae family 1 9015 6 2 1390 1 genus Ketobacter 2025617 0 1 Ketobacter alkanivorans species 1917421 0 1384 1 7561 59753 0 genus Alcanivorax 6 109 1 685 no rank 2638842 0 Alcanivorax sp. NBRC 101098 species 1113728 0 685 1 1 1708 species Alcanivorax xenomutans 0 1094342 2349 0 285091 species Alcanivorax dieselolei 1 1 2054 species Alcanivorax pacificus 0 1306787 1 Alcanivorax borkumensis species 59754 0 656 7925 1 Oceanospirillaceae family 0 135620 99 12 1 1393 0 1537406 Bacterioplanes genus 2 24 1249553 0 Bacterioplanes sanyensis species 1369 1 188907 0 Oleispira genus 1 989 2 8 1 981 species Oleispira antarctica 188908 0 4 16 28253 0 genus Marinomonas 1 2060 0 936476 Marinomonas posidonica species 719 1 750 119864 0 species Marinomonas mediterranea 1 575 no rank 0 196814 1 575 Marinomonas sp. MWYL1 species 0 400668 1 genus 187492 0 616 1 616 Thalassolituus oleivorans species 0 187493 1 15 2 2768 1 genus Marinobacterium 0 48075 1 2753 Marinobacterium aestuarii species 0 1821621 224379 0 Hahellaceae family 1 1647 3 7 1640 1 Hahella genus 0 158481 9 2 1 0 158327 Hahella chejuensis species 1631 28256 0 Halomonadaceae family 1 38573 30 581 8 2 Cobetia genus 0 204286 2060 1 1 species Cobetia marina 0 28258 2052 Chromohalobacter genus 0 42054 1638 1 6 2 1632 0 158080 species Chromohalobacter salexigens 1 134 2 genus Halotalea 376488 0 2002 1 1 1868 0 376489 Halotalea alkalilenta species 3 407 no rank 0 114403 97 1495768 0 genus 1 97 0 1495769 species Candidatus Evansia muelleri 1 1 294 genus 0 235572 294 91844 0 Candidatus Portiera aleyrodidarum species 1 genus 114185 0 16 1 1 16 Candidatus Carsonella ruddii species 0 114186 15 499 1 25638 0 2745 genus Halomonas 1 674 0 213554 species Halomonas campaniensis Halomonas huangheensis species 1178482 0 1118 1 8 2609666 0 no rank 10812 1 1508 1610576 0 species Halomonas sp. R57-5 1 2018 0 2136172 species Halomonas sp. SF2003 1 2893 species Halomonas sp. 1513 0 1883416 1 734 1971364 0 species Halomonas sp. GT 1 1949203 0 species Halomonas sp. 'Soap Lake #6' 905 1 906 Halomonas sp. 'Soap Lake #7' species 1962264 0 Halomonas sp. GFAJ-1 species 1118153 0 490 1 species Halomonas sp. KO116 0 1504981 1358 1 1968 507626 0 species Halomonas chromatireducens 1 1 species Halomonas aestuarii 0 1897729 4712 1 2334 Halomonas hydrothermalis species 115561 0 3521 species Halomonas beimenensis 475662 0 1 2339 1 genus Salinicola 0 404432 86 2 1 species Salinicola tamaricis 1771309 0 2253 504090 0 Kushneria genus 1 3908 3 43 2139 157779 0 Kushneria marisflavi species 1 species Kushneria konosiri 698828 0 1726 1 3 5 family Saccharospirillaceae 255527 0 1876 1 2 27 1 1192 0 1445504 genus Gynuella 0 1445505 species Gynuella sunshinyii 1165 1 681 1 Reinekea genus 0 230494 5 2 1336806 0 species Reinekea forsetii 676 1 12 35 order Thiotrichales 0 72273 14271 1 15 51 0 135616 family Piscirickettsiaceae 1 5441 1365 1 genus Cycloclasticus 0 34067 7 4 903 2621467 0 no rank 2 species Cycloclasticus sp. P1 385025 0 333 1 1 570 728003 0 species Cycloclasticus sp. PY97N 0 1329899 species Cycloclasticus zancles 455 1 928 1 Piscirickettsia genus 0 1237 1 2 927 0 1238 species Piscirickettsia salmonis 1 6 2 genus Hydrogenovibrio 28884 0 585 1 1 Hydrogenovibrio crunogenus species 0 39765 579 1 1262 0 40222 genus Methylophaga 3 9 1 0 754476 Methylophaga nitratireducenticrescens species 688 565 species Methylophaga frappieri 754477 0 1 1 3 Thiomicrospira genus 933 0 1250 1 147268 0 Thiomicrospira cyclica species 766 1 1 92245 0 Thiomicrospira aerophila species 483 5 14 Francisellaceae family 34064 0 7456 1 175 1869285 0 genus 1 Allofrancisella guangzhouensis species 0 594679 175 1 12 53 1 7276 262 0 Francisella genus 1 312 0 573570 species Francisella sp. TX077310 1 294 species Francisella halioticida 0 549298 354 0 954 species Francisella persica 1 1586 Francisella philomiragia species 0 28110 1 1591 Francisella tularensis species 0 263 1 0 573569 species Francisella sp. TX077308 527 1 1 377 Francisella hispaniensis species 0 622488 445 1542390 0 Francisella sp. CA97-1460 species 1 1 species Francisella noatunensis 0 657445 864 2 873 0 2610885 no rank 1547445 0 Francisella sp. FSC1006 species 488 1 1 Francisella sp. MA067296 species 0 475375 385 0 135617 family Thiotrichaceae 1 1362 5 1 659 1 genus Thioploca 0 40751 5 2 1 654 40754 0 Thioploca ingrica species 2 2 702 1 genus Beggiatoa 0 1021 1 700 0 288004 species Beggiatoa leptomitoformis 47 43 order Vibrionales 0 135623 40362 1 42 294 0 641 family Vibrionaceae 1 40315 4 14 1 3466 0 657 Photobacterium genus 754 74109 0 species Photobacterium profundum 1 1 1198 0 38293 species Photobacterium damselae 1 1500 species Photobacterium gaetbulicola 0 1295392 1800 1 Aliivibrio genus 511678 0 18 4 1 632 species Aliivibrio wodanis 80852 0 1 Aliivibrio salmonicida species 40269 0 522 1 628 species Aliivibrio fischeri 0 668 genus Grimontia 0 246861 1177 1 23 2 1 1154 Grimontia hollisae species 673 0 553 30 genus Vibrio 662 0 33143 1 1 190893 0 species Vibrio coralliilyticus 1832 Vibrio qinghaiensis species 0 2025808 668 1 910 0 52443 species Vibrio tapetis 1 no rank 0 2614977 1235 2 1116375 0 species Vibrio sp. EJY3 651 1 1 2014742 0 Vibrio sp. 2521-89 species 584 551 1534743 0 Vibrio hyugaensis species 1 1 959 species Vibrio nigripulchritudo 28173 0 2875 Vibrio vulnificus species 0 672 1 1 0 45658 species Vibrio scophthalmi 1065 1 867 Vibrio tritonius species 1435069 0 1 Vibrio fluvialis species 0 676 2291 1 Vibrio anguillarum species 0 55601 1115 717610 0 species group 11725 10 1 2439 0 663 Vibrio alginolyticus species 1 476 Vibrio jasicida species 766224 0 949 0 696485 Vibrio owensii species 1 2 2315253 0 species subgroup 1624 541 0 150340 Vibrio antiquarius species 1 50719 0 species Vibrio diabolicus 1083 1 1 species Vibrio natriegens 0 691 1264 1 1621 species Vibrio campbellii 0 680 628 Vibrio rotiferianus species 190895 0 1 1835 Vibrio parahaemolyticus species 670 0 1 Vibrio harveyi species 0 669 889 1 1 553239 0 species Vibrio breoganii 714 1 1239 species Vibrio furnissii 0 29494 1424 0 674 species Vibrio mimicus 1 1 652 species Vibrio gazogenes 0 687 666 0 Vibrio cholerae species 1445 1 212663 0 Vibrio tasmaniensis species 442 1 1 0 1891919 species group 581 1 Vibrio tubiashii species 0 29498 581 0 2042066 genus 435 1 435 Paraphotobacterium marinum species 1755811 0 1 4 32 0 1934945 Immundisolibacterales order 1 3176 3 153 1934946 0 family Immundisolibacteraceae 1 3144 2991 1 genus Immundisolibacter 1934947 0 25 2 1 1810504 0 Immundisolibacter cernigliae species 2966 5 1484 order 0 1240482 15 5 family Orbaceae 0 1240483 1484 1 2 1 1335631 0 genus Frischella 1 629 628 0 1267021 species Frischella perrara 1 1 840 0 1193503 Gilliamella genus 2 4 1 0 1196095 species Gilliamella apicola 836 1692040 0 order Acidiferrobacterales 1 4852 6 83 0 1692041 Acidiferrobacteraceae family 1 4769 5 89 35 2 2723 1 genus Sulfuricaulis 1744881 0 1 Sulfuricaulis limicola species 0 1620215 2688 36 2 genus Sulfurifustis 1692042 0 1957 1 1 1675686 0 Sulfurifustis variabilis species 1921 754 52 52419 1 order Chromatiales 135613 0 2 3290 0 451214 no rank 116 2 3290 1 genus Thiohalobacter 1273155 0 3174 Thiohalobacter thiocyanaticus species 0 585455 1 1046 0 family Chromatiaceae 1 19206 18 423 2 22 0 85072 genus Allochromatium 1 2768 1 Allochromatium vinosum species 1049 0 2746 1 2978 0 85076 genus Marichromatium 2 176 Marichromatium purpuratum species 37487 0 2802 1 13724 0 genus Thiocystis 1 2197 2 56 73141 0 species Thiocystis violascens 2141 1 34 2 2247 1 genus Thioflavicoccus 0 156885 0 80679 species Thioflavicoccus mobilis 2213 1 1634 82569 0 no rank 1 1 1634 Chromatiaceae bacterium 2141T.STBD.0c.01a species 0 1978339 6 2 239 1 Candidatus Nitrosoglobus genus 0 1980513 1 Candidatus Nitrosoglobus terrae species 1630141 0 233 1 4597 0 53392 genus Thiodictyon 2 89 Candidatus Thiodictyon syntrophicum species 0 1166950 4508 1 4 19 1 2123 0 1227 Nitrosococcus genus 439 Nitrosococcus oceani species 0 1229 1 1 0 473531 species Nitrosococcus watsonii 573 1 1092 133539 0 species Nitrosococcus halophilus 22688 1 family Ectothiorhodospiraceae 72276 0 341 18 35 3 genus Spiribacter 0 1335745 1788 1 1 Spiribacter curvatus species 1335757 0 1033 1 0 1335746 species Spiribacter salinus 720 2826 1 genus Ectothiorhodospira 1051 0 13 2 no rank 0 2684909 2813 1 2813 0 1442136 Ectothiorhodospira sp. BSL-9 species 1 1 3237 133193 0 genus Alkalilimnicola 2 92 1 3145 species Alkalilimnicola ehrlichii 351052 0 160 6 Thioalkalivibrio genus 106633 0 11261 1 1 4154 species Thioalkalivibrio sulfidiphilus 0 1033854 186931 0 species Thioalkalivibrio nitratireducens 1292 1 106634 0 species Thioalkalivibrio versutus 2590 1 1 108010 0 species Thioalkalivibrio paradoxus 1503 no rank 0 2621013 1562 1 1 1562 0 396595 species Thioalkalivibrio sp. K90mix 1348 1 genus Acidihalobacter 0 1765964 25 2 Acidihalobacter prosperus species 0 160660 1323 1 Halorhodospira genus 85108 0 1887 1 29 2 1858 Halorhodospira halophila species 1053 0 1 1 2236 0 1676141 family Wenzhouxiangellaceae 3 34 80 2 2202 1 Wenzhouxiangella genus 0 1676142 species Wenzhouxiangella marina 1579979 0 2122 1 1 915 1738654 0 Woeseiaceae family 3 2 2 13 1738655 0 Woeseia genus 1 913 900 0 1548547 species Woeseia oceani 1 10 3 1342 1 Granulosicoccaceae family 449719 0 2 2 1 1332 437504 0 genus Granulosicoccus 1 1330 species Granulosicoccus antarcticus 437505 0 20 4 1988 1 family Halothiobacillaceae 255526 0 0 109262 Halothiobacillus genus 1 1968 3 42 1 828 Halothiobacillus neapolitanus species 0 927 no rank 2636392 0 1098 1 0 1860122 species Halothiobacillus sp. LS2 1098 1 Enterobacterales order 0 91347 2270939 1 2047 247 14 48 1903412 0 family Hafniaceae 1 24771 genus Hafnia 0 568 5162 1 168 3 1 no rank 0 2621980 997 1 species Hafnia sp. CBA7124 0 1848580 997 species Hafnia alvei 0 569 3997 1 1 2354 0 82982 genus Obesumbacterium 2 837 1 1517 Obesumbacterium proteus species 82983 0 8 971 1 17207 635 0 genus Edwardsiella 1 species Edwardsiella tarda 0 636 4134 1 species Edwardsiella anguillarum 0 1821960 2004 Edwardsiella piscicida species 0 1263550 2129 1 1 Edwardsiella hoshinae species 93378 0 1423 2 4225 2676541 0 no rank 1956 species Edwardsiella sp. LADL05-105 1650654 0 1 2269 0 1578828 Edwardsiella sp. EA181011 species 1 1 67780 0 species Edwardsiella ictaluri 2321 2177 no rank 451511 0 2 2 79 702 0 Plesiomonas genus 1 2177 1 2098 703 0 Plesiomonas shigelloides species 0 543 Enterobacteriaceae family 1 2061547 119 6834 genus Candidatus Moranella 1048757 0 74 1 2 2 1 0 1048758 species Candidatus Moranella endobia 72 10 10530 1 768687 570 0 genus Klebsiella 1 Klebsiella quasipneumoniae species 1463165 0 101707 1134687 0 Klebsiella michiganensis species 11826 1 no rank 2608929 0 10847 2 1 6532 Klebsiella sp. LTGPAF-6F species 0 1905288 4315 1934254 0 species Klebsiella sp. M5al 1 1 244366 0 species Klebsiella variicola 128939 1 32753 0 548 Klebsiella aerogenes species 1 414068 0 573 Klebsiella pneumoniae species 571 0 species Klebsiella oxytoca 27934 1 1 30083 species Klebsiella quasivariicola 2026240 0 5 2972 1 366665 0 561 genus Escherichia 1 Escherichia coli species 562 0 326200 16729 Escherichia albertii species 208962 0 1 564 0 species Escherichia fergusonii 14586 1 6178 1499973 0 Escherichia marmotae species 1 genus Cedecea 158483 0 7005 1 92 2 0 158822 species Cedecea neteri 6913 1 12179 1 Leclercia genus 83654 0 339 4 no rank 0 2627398 8785 2 species Leclercia sp. LSNIH1 0 1920114 5426 1 3359 species Leclercia sp. LSNIH3 0 1920116 1 1 0 83655 species Leclercia adecarboxylata 3055 18 no rank 0 191675 3043 18 3043 84563 0 clade clade 0 146507 1020 4 1 0 134287 secondary endosymbiont of Heteropsylla cubana species 213 364 species secondary endosymbiont of Ctenarytaina eucalypti 1199245 0 1 2 3 0 568987 Candidatus Hamiltonella genus 1 443 Candidatus Hamiltonella defensa species 138072 0 440 1 genus 1906661 0 363 1 1 363 1070130 0 species Candidatus Gullanella endobia genus 0 1682492 220 1 220 1410383 0 species Candidatus Tachikawaea gelatinosa 1 1906660 0 genus 81 1 1778264 0 Candidatus Mikella endobia species 81 1 1 254 0 1906657 genus 254 species Candidatus Doolittlea endobia 1778262 0 1 1 177 0 1906659 genus Candidatus Hoaglandella 2 4 1 Candidatus Hoaglandella endobia species 0 1778263 173 7 clade 0 84564 768 203804 0 Candidatus Blochmannia genus 1 768 7 19 203907 0 Candidatus Blochmannia floridanus species 63 1 1 148 species Candidatus Blochmannia vafer 0 251535 97 Candidatus Blochmannia pennsylvanicus species 0 101534 1 1 87 species Candidatus Blochmannia chromaiodes 251542 0 2 no rank 0 711328 354 1 242 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus species 0 1505597 1 112 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 1505596 0 1 160 199891 0 clade 1 160 0 1835721 secondary endosymbiont of Trabutina mannipara species 3 331 1 23150 160674 0 Raoultella genus 4673 Raoultella planticola species 575 0 1 18146 54291 0 species Raoultella ornithinolytica 1 3 209 590 0 genus Salmonella 1 41807 species Salmonella bongori 0 54736 2578 1 1 39020 Salmonella enterica species 0 28901 12265 22 Enterobacter genus 0 547 471667 1 12 399570 354276 0 species group 1 3896 Enterobacter cancerogenus species 0 69218 1 species Enterobacter cloacae 550 0 225777 1 11616 species Enterobacter kobei 0 208224 Enterobacter cloacae complex 'Hoffmann cluster IV' species 1812935 0 32432 1 299767 0 Enterobacter ludwigii species 3084 1 88707 1 species Enterobacter hormaechei 0 158836 57553 3 1 0 1812934 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 8886 22268 0 1296536 subspecies Enterobacter xiangfangensis 1 16806 0 61645 Enterobacter asburiae species 1 no rank 2757714 0 17252 3 6661 2027919 0 species Enterobacter cloacae complex bacterium 1 1 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 2077137 3321 7270 1915310 0 Enterobacter cloacae complex sp. ECNIH7 species 1 59832 no rank 0 2608935 9 species Enterobacter sp. FY-07 1692238 0 2761 1 1 species Enterobacter sp. Crenshaw 1977566 0 5094 5239 0 1868135 Enterobacter sp. HK169 species 1 Enterobacter sp. 638 species 399742 0 1895 1 1166130 0 Enterobacter sp. R4-368 species 2650 1 species Enterobacter sp. CRENT-193 2051905 0 23450 1 2982 0 1914861 Enterobacter sp. SA187 species 1 1 10386 1827481 0 Enterobacter sp. ODB01 species species Enterobacter sp. E20 1560339 0 5375 1 5 36866 0 no rank 17638 1823 species Plautia stali symbiont 891974 0 1 1 species Enterobacteriaceae bacterium ENNIH3 1920128 0 3264 2559 Enterobacteriaceae bacterium ENNIH1 species 0 2066051 1 6644 Enterobacteriaceae bacterium strain FGI 57 species 693444 0 1 3348 0 1920109 species Enterobacteriaceae bacterium ENNIH2 1 1 94778 0 620 genus Shigella 4 4415 1 36451 no rank 0 2629414 1 1813821 0 species Shigella sp. PAMC 28760 36451 1 22795 species Shigella flexneri 623 0 1 31117 0 622 Shigella dysenteriae species 1 21063 1330545 0 genus Lelliottia 4 80 0 69220 species Lelliottia nimipressuralis 13598 1 1 4729 61646 0 species Lelliottia amnigena Lelliottia jeotgali species 1907578 0 2656 1 12368 1 Kosakonia genus 1330547 0 176 5 1 2612 497725 0 Kosakonia oryzae species 2860 0 1158459 Kosakonia sacchari species 1 species Kosakonia cowanii 208223 0 3123 1 3597 species Kosakonia radicincitans 283686 0 1 168 1 Candidatus Ishikawaella genus 0 409304 3 2 Candidatus Ishikawaella capsulata species 168169 0 165 1 Citrobacter genus 0 544 175353 1 4399 14 7 0 1344959 species group 114909 species Citrobacter werkmanii 67827 0 19351 1 6504 0 57706 species Citrobacter braakii 1 1 2573 0 2066049 species Citrobacter freundii complex sp. CFNIH2 1 6423 Citrobacter freundii complex sp. CFNIH9 species 2077149 0 1 62233 Citrobacter freundii species 0 546 1 5144 species Citrobacter freundii complex sp. CFNIH3 2077147 0 species Citrobacter freundii complex sp. CFNIH4 0 2077148 12681 1 1 7501 0 35703 Citrobacter amalonaticus species 4162 species Citrobacter koseri 0 545 1 Citrobacter rodentium species 67825 0 3781 1 no rank 2644389 0 37897 2 1 4130 Citrobacter sp. CFNIH10 species 0 1920110 1 species Citrobacter sp. FDAARGOS_156 0 1702170 33767 67824 0 Citrobacter farmeri species 2704 1 1 12629 0 1330546 Pluralibacter genus 3 101 1 Pluralibacter gergoviae species 0 61647 7795 1 [Enterobacter] lignolyticus species 1334193 0 4733 genus 579 0 3347 1 3347 61648 0 species Kluyvera intermedia 1 0 413496 Cronobacter genus 1 20191 8 822 species Cronobacter sakazakii 28141 0 5092 1 1808 0 1163710 species Cronobacter condimenti 1 0 413501 species Cronobacter muytjensii 2310 1 2445 413502 0 species Cronobacter turicensis 1 0 535744 species Cronobacter universalis 2742 1 2211 413503 0 Cronobacter malonaticus species 1 1 413497 0 Cronobacter dublinensis species 2761 1335483 0 Shimwellia genus 1 2336 2 8 Shimwellia blattae species 0 563 2328 1 1 565 401618 0 genus 1 species Candidatus Riesia pediculicola 401619 0 565 Yersiniaceae family 0 1903411 83981 1 328 39 613 0 genus Serratia 1 58332 16 3797 28151 0 species Serratia proteamaculans 2157 1 1 0 61652 Serratia rubidaea species 3373 8 19360 no rank 0 2647522 1 1680 species Serratia sp. AS13 0 768493 0 2033438 Serratia sp. MYb239 species 3011 1 1 3340 Serratia sp. FGI94 species 0 671990 1661 Serratia sp. ATCC 39006 species 0 104623 1 species Serratia sp. SCBI 0 488142 2579 1 1 3045 Serratia sp. FS14 species 1327989 0 0 1758196 Serratia sp. SSNIH1 species 2364 1 1 768490 0 species Serratia sp. AS12 1680 614 0 species Serratia liquefaciens 2403 1 1 Serratia ficaria species 0 61651 3076 3667 47917 0 species Serratia fonticola 1 3976 species Serratia plymuthica 82996 0 1 1 16523 species Serratia marcescens 615 0 1228 13 genus Yersinia 629 0 16475 1 0 29486 species Yersinia ruckeri 1110 1 3 0 1649845 species group 3531 632 0 Yersinia pestis species 1084 1 1 species Yersinia pseudotuberculosis 633 0 1422 1 1025 Yersinia similis species 0 367190 645 no rank 0 2653513 1 1 Yersinia sp. FDAARGOS_228 species 1839800 0 645 1 species Yersinia aleksiciae 0 263819 781 1019 29485 0 species Yersinia rohdei 1 1 0 29483 Yersinia aldovae species 611 631 0 Yersinia intermedia species 727 1 888 0 28152 species Yersinia kristensenii 1 3561 Yersinia enterocolitica species 0 630 1 1 Yersinia frederiksenii species 29484 0 2374 1 115 0 1565532 genus Rouxiella 5197 1 genus Rahnella 0 34037 133 4 1 1821 0 34038 species Rahnella aquatilis no rank 0 2635087 3243 2 1 Rahnella sp. Y9602 species 0 741091 1719 1524 Rouxiella sp. ERMR1:05 species 1805933 0 1 9 2 genus Chania 0 1745211 1372 1 1 0 1639108 species Chania multitudinisentens 1363 1 2162 929812 0 Gibbsiella genus 2 6 species Gibbsiella quercinecans 929813 0 2156 1 141 27 39737 1 family Erwiniaceae 1903409 0 genus Tatumella 0 82986 1107 1 12 2 species Tatumella citrea 53336 0 1095 1 551 0 genus Erwinia 1 10037 8 376 1619313 0 Erwinia gerundensis species 2030 1 1 338565 0 Erwinia tasmaniensis species 1265 1 Erwinia pyrifoliae species 0 79967 1131 1 2622719 0 no rank 1287 1 1287 0 215689 Erwinia sp. Ejp617 species 143 0 1922217 species Candidatus Erwinia sp. ErCipseudotaxifoliae 1 1 552 0 Erwinia amylovora species 1181 1 2624 182337 0 Erwinia billingiae species 342 1 genus Wigglesworthia 51228 0 2 2 Wigglesworthia glossinidia species 0 51229 340 1 1328 11 Pantoea genus 53335 0 21032 1 267 Candidatus Pantoea carbekii species 1235990 0 1 1 1730 species Pantoea ananatis 553 0 3700 470934 0 species Pantoea vagans 1 1609 1891675 0 species Pantoea alhagi 1 species group 0 1654067 3254 1 0 549 species Pantoea agglomerans 3254 1 Pantoea rwandensis species 0 1076550 1145 1 3 6714 2630326 0 no rank 1 2089 0 1484157 Pantoea sp. PSNIH2 species 2821 592316 0 Pantoea sp. At-9b species 1 1 1804 1484158 0 species Pantoea sp. PSNIH1 1285 species Pantoea stewartii 0 66269 1 2 4590 genus 0 2100764 1 2133 0 665913 species Pantoea calida 2457 Pantoea gaviniae species 665914 0 1 2488 0 32199 genus 1 2488 9 0 Buchnera aphidicola species 1 37902 1 family Pectobacteriaceae 0 1903410 172 20 1 5311 84565 0 genus Sodalis 5 118 1261 Sodalis glossinidius species 0 63612 1 1 Sodalis endosymbiont of Henestaris halophilus species 1929246 0 229 1 1535 1486991 0 Candidatus Sodalis pierantonius species 1 2168 0 1239307 species Sodalis praecaptivus 1 2156 0 71655 genus Brenneria 2 31 1 1109412 0 Brenneria goodwinii species 2125 758 6 Dickeya genus 204037 0 16910 1 1 Dickeya dianthicola species 0 204039 2180 1778540 0 Dickeya fangzhongdai species 3156 1 1 0 1089444 species Dickeya solani 5041 1 0 204042 species Dickeya zeae 2979 1 2796 species Dickeya dadantii 204038 0 0 122277 genus Pectobacterium 1 13353 6 389 1363 0 29471 Pectobacterium atrosepticum species 1 1 2042057 0 species Pectobacterium polaris 2285 1 1905730 0 species Pectobacterium parmentieri 1595 1 55208 0 Pectobacterium wasabiae species 1490 1 Pectobacterium carotovorum species 0 554 6231 1069 1 family Budviciaceae 1903416 0 1 3 6 2 genus Pragia 82984 0 1068 1 1 1062 82985 0 species Pragia fontium 17708 1 family Morganellaceae 1903414 0 77 22 Morganella genus 0 581 3325 1 60 2 1 0 582 Morganella morganii species 3265 626 0 genus Xenorhabdus 1 4597 6 37 628 0 species Xenorhabdus nematophila 885 1 1 1407 0 40576 Xenorhabdus bovienii species 1 Xenorhabdus hominickii species 351679 0 885 499 Xenorhabdus poinarii species 0 40577 1 Xenorhabdus doucetiae species 0 351671 884 1 1 2589 0 586 Providencia genus 4 46 1 0 587 species Providencia rettgeri 626 1 126385 0 Providencia alcalifaciens species 765 Providencia stuartii species 588 0 1152 1 4 33 1 2593 0 29487 genus Photorhabdus 0 574560 species Photorhabdus temperata 770 1 1 species Photorhabdus luminescens 0 29488 963 1 827 0 291112 species Photorhabdus asymbiotica genus Proteus 0 583 4314 1 122 3 1 584 0 Proteus mirabilis species 3392 585 0 Proteus vulgaris species 800 1 2 3 1 213 0 637 genus Arsenophonus 210 Arsenophonus symbiont of Lipoptena fortisetosa species 0 634113 1 2 393 order 0 135615 868 0 family 393 2 393 1 genus Dichelobacter 869 0 27 2 366 0 870 species Dichelobacter nodosus 1 72274 0 order Pseudomonadales 1 295619 128 1851 28766 1 Moraxellaceae family 468 0 154 42 genus Psychrobacter 497 0 5643 1 55 11 6 3806 196806 0 no rank 726 0 1699622 Psychrobacter sp. P2G3 species 1 Psychrobacter sp. P11G5 species 0 1699624 756 1 1 393 Psychrobacter sp. G species 571800 0 540 1720344 0 Psychrobacter sp. AntiMn-1 species 1 808 Psychrobacter sp. PRwf-1 species 0 349106 1 1 0 1028416 Psychrobacter sp. DAB_AL43B species 583 274 Psychrobacter urativorans species 0 45610 1 1 261164 0 Psychrobacter alimentarius species 504 1 Psychrobacter cryohalolentis species 0 330922 354 334543 0 Psychrobacter arcticus species 650 1 449 25 genus Acinetobacter 0 469 19701 1 1 40215 0 species Acinetobacter junii 871 1 715 Acinetobacter oleivorans species 1148157 0 1 0 487316 Acinetobacter soli species 912 3406 no rank 196816 0 7 1 Acinetobacter sp. LoGeW2-3 species 1808001 0 708 1 1758189 0 Acinetobacter sp. ACNIH2 species 425 684 0 1407071 Acinetobacter sp. TGL-Y2 species 1 1 species Acinetobacter sp. ACNIH1 1636603 0 593 1 0 1608473 species Acinetobacter sp. NCu2D-2 411 295 0 2079596 Acinetobacter sp. SWBY1 species 1 290 1646498 0 species Acinetobacter sp. TTH0-4 1 1 927 Acinetobacter radioresistens species 40216 0 0 108981 Acinetobacter schindleri species 593 1 5 7850 909768 0 species group species Acinetobacter pittii 0 48296 2172 1 1 954 106654 0 species Acinetobacter nosocomialis 420 0 1785128 Acinetobacter lactucae species 1 Acinetobacter calcoaceticus species 471 0 819 1 1 Acinetobacter baumannii species 0 470 3485 417 1789224 0 Acinetobacter larvae species 1 1 435 106648 0 Acinetobacter bereziniae species 1 species Acinetobacter equi 1324350 0 569 1 0 40214 Acinetobacter johnsonii species 628 662 Acinetobacter indicus species 0 756892 1 1 29430 0 species Acinetobacter haemolyticus 710 1 species 0 202950 557 1 0 62977 strain Acinetobacter sp. ADP1 557 5 67 0 475 genus Moraxella 1 3268 species Moraxella ovis 0 29433 501 1 1 Moraxella osloensis species 0 34062 1120 971 Moraxella bovoculi species 0 386891 1 Moraxella catarrhalis species 0 480 609 1 0 135621 family Pseudomonadaceae 1 265002 85 1906 508 genus 1849530 0 1 1 Oblitimonas alkaliphila species 1697053 0 508 80 10046 286 0 Pseudomonas genus 1 255391 species group 136846 0 15226 2 1 13283 0 578833 species subgroup 1 13283 Pseudomonas stutzeri species 0 316 1 Pseudomonas balearica species 74829 0 1943 1 157783 0 Pseudomonas cremoricolorata species 1666 2414 65741 0 species Pseudomonas knackmussii 1 219572 0 Pseudomonas antarctica species 1220 1 1 198620 0 species Pseudomonas koreensis 2741 0 196821 no rank 54461 30 1 species Pseudomonas sp. Os17 0 1500686 2652 1 1750 69328 0 species Pseudomonas sp. VLB120 1 1327 1931241 0 species Pseudomonas sp. S-6-2 1376 2083055 0 Pseudomonas sp. LH1G9 species 1 Pseudomonas sp. LG1D9 species 0 2083054 1574 1 2139 Pseudomonas sp. FGI182 species 1259844 0 1 1523 0 1415630 species Pseudomonas sp. TKP 1 0 1659194 Pseudomonas sp. GR 6-02 species 1435 1 0 1028989 Pseudomonas sp. StFLB209 species 2506 1 0 1283291 species Pseudomonas sp. URMO17WK12:I11 2850 1 species Pseudomonas sp. NC02 2067572 0 1633 1 0 1207075 species Pseudomonas sp. UW4 1197 1 1 Pseudomonas sp. St29 species 1500687 0 2834 1 1523 species Pseudomonas sp. DR 5-09 1534110 0 Pseudomonas sp. MYb193 species 0 1827300 1049 1 1610 0 2069256 species Pseudomonas sp. XWY-1 1 1 1597 species Pseudomonas sp. SWI44 2083053 0 1885 0 1898684 Pseudomonas sp. LPH1 species 1 1 1770 Pseudomonas sp. SWI36 species 0 2083052 species Pseudomonas sp. ATCC 13867 0 1294143 2984 1 2414 Pseudomonas sp. MRSN12121 species 0 1611770 1 2049589 0 Pseudomonas sp. HLS-6 species 1332 1 1 2432 0 1856685 species Pseudomonas sp. TCU-HL1 1338689 0 species Pseudomonas sp. JY-Q 1734 1 2083051 0 species Pseudomonas sp. SWI6 1403 1 2018067 0 species Pseudomonas sp. FDAARGOS_380 1301 1 866 0 1981174 species Pseudomonas sp. M30-35 1 1 Pseudomonas sp. PONIH3 species 1636610 0 2094 1 0 1930532 species Pseudomonas sp. CC6-YY-74 1526 2145 1649877 0 Pseudomonas sp. CCOS 191 species 1 1 312306 0 species Pseudomonas entomophila 2236 2588 Pseudomonas psychrotolerans species 0 237610 1 1732 species Pseudomonas rhizosphaerae 216142 0 1 species group 0 136842 12191 2 1 Pseudomonas chlororaphis species 0 587753 9658 296 0 species Pseudomonas fragi 2533 1 6 39852 species group 136845 0 1 21930 species Pseudomonas putida 0 303 1 Pseudomonas fulva species 0 47880 3485 4736 species Pseudomonas mosselii 78327 0 1 1 2400 species Pseudomonas oryzihabitans 47885 0 1 0 70775 species Pseudomonas plecoglossicida 1765 1 76759 0 Pseudomonas monteilii species 5536 species group 136849 0 22068 8 1 1328 0 36746 Pseudomonas cichorii species 3847 species subgroup 251698 0 2 1 47877 0 Pseudomonas amygdali species 1999 1 1848 Pseudomonas savastanoi species 29438 0 1 46257 0 species Pseudomonas avellanae 1525 2709 species Pseudomonas syringae group genomosp. 3 251701 0 1 1 species subgroup 0 251695 9475 1 0 317 Pseudomonas syringae species 9475 1 no rank 2775504 0 1195 1 1195 0 1206777 Pseudomonas sp. Lz4W species 1 1989 33069 0 Pseudomonas viridiflava species 1 0 244566 Pseudomonas lurida species 1356 1367 237609 0 species Pseudomonas alkylphenolica 1 35826 species group 136841 0 6 1 1232139 0 species subgroup 3424 1 0 1149133 species Pseudomonas furukawaii 3424 1 Pseudomonas mendocina species 0 300 8616 1 12419 species Pseudomonas aeruginosa 0 287 Pseudomonas resinovorans species 53412 0 3142 1 Pseudomonas alcaligenes species 0 43263 2511 1 1 5714 species Pseudomonas citronellolis 53408 0 1643 0 1583341 species Pseudomonas cerasi 1 1345 Pseudomonas silesiensis species 0 1853130 1 1 1997 101564 0 Pseudomonas alcaliphila species 32548 0 136843 species group 9 1 Pseudomonas protegens species 380021 0 3357 1 1343 Pseudomonas poae species 0 200451 1 1315 47879 0 Pseudomonas corrugata species species Pseudomonas trivialis 200450 0 2036 1 1 species Pseudomonas azotoformans 47878 0 2371 1302 Pseudomonas veronii species 0 76761 1 1 species Pseudomonas mandelii 75612 0 1419 1 18182 species Pseudomonas fluorescens 0 294 1223 76758 0 Pseudomonas orientalis species 1 2656 Pseudomonas parafulva species 0 157782 1 0 1788301 Pseudomonas versuta species 954 1 1 3812 0 104087 Pseudomonas frederiksbergensis species 1 Pseudomonas brassicacearum species 0 930166 3446 351 0 subfamily 7197 3 352 0 Azotobacter genus 1 7197 3 152 Azotobacter vinelandii species 354 0 2721 1 4324 species Azotobacter chroococcum 0 353 1 no rank 0 33811 3750 2 1527 83406 0 species gamma proteobacterium HdN1 1 2223 1248727 0 endosymbiont of unidentified scaly snail isolate Monju species 1 6525 118884 0 no rank 13 3 5 1 702 655184 0 Candidatus Thioglobus genus 1 species Candidatus Thioglobus singularis 1427364 0 277 1 1705394 0 Candidatus Thioglobus autotrophicus species 420 2 3 1524249 0 Pseudohongiella genus 1 1019 1 0 1249552 species Pseudohongiella spirulinae 1016 10 2 1589 1 Sedimenticola genus 349742 0 0 1543721 Sedimenticola thiotaurini species 1579 1 3 0 32036 clade 792 1 281 113267 0 species Bathymodiolus septemdierum thioautotrophic gill symbiont genus 1541743 0 360 1 1 360 Candidatus Ruthia magnifica species 0 386487 151 species Calyptogena okutanii thioautotrophic gill symbiont 0 410330 1 1 536 0 198346 clade Candidatus Baumannia cicadellinicola species 0 186490 536 1 2 11 1 1887 1608298 0 genus Thiolapillus Thiolapillus brandeum species 1076588 0 1876 1 4 8 0 1775403 order Nevskiales 1 1537 1 family Sinobacteraceae 568386 0 37 2 1492 family 2689614 0 2 19 1 1492 0 469322 genus Steroidobacter 1 1473 Steroidobacter denitrificans species 0 465721 1 10733 0 135618 Methylococcales order 12 99 11 136 1 10634 0 403 Methylococcaceae family 6182 1 genus Methylomonas 0 416 82 5 species Methylomonas koyamae 702114 0 1753 1 1698 no rank 2608980 0 1 1698 1727196 0 Methylomonas sp. DH-1 species 1 1350 Methylomonas methanica species 0 421 1 1 Methylomonas denitrificans species 0 1538553 1299 1 967 0 39773 genus 1 967 0 271065 species Methylomicrobium alcaliphilum 0 762296 genus Methylovulum 1 1418 2 1 1 1417 1704499 0 Methylovulum psychrotolerans species 1931 1 Methylococcus genus 0 413 6 2 1 Methylococcus capsulatus species 414 0 1925 69377 1 order Alteromonadales 135622 0 362 105 18 3 2511 1 Ferrimonadaceae family 0 267892 genus Ferrimonas 0 44011 2493 1 27 2 1 2466 Ferrimonas balearica species 0 44012 42 25 13942 1 family Pseudoalteromonadaceae 0 267888 24 301 0 53246 Pseudoalteromonas genus 1 13900 1 964 0 288 species Pseudoalteromonas atlantica 1 Pseudoalteromonas agarivorans species 176102 0 360 1 species Pseudoalteromonas nigrifaciens 0 28109 493 1 Pseudoalteromonas piscicida species 43662 0 518 0 1348114 species Pseudoalteromonas piratica 564 1 1 Pseudoalteromonas spongiae species 298657 0 1134 725 Pseudoalteromonas aliena species 0 247523 1 194690 0 no rank 3052 5 1761891 0 Pseudoalteromonas sp. 13-15 species 504 1 Pseudoalteromonas sp. NC201 species 1514074 0 703 1 674 species Pseudoalteromonas sp. Bsw20308 0 283699 1 676 0 1720343 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 1 234831 0 Pseudoalteromonas sp. SM9913 species 495 1 698 43658 0 species Pseudoalteromonas rubra 1 488 166935 0 species Pseudoalteromonas translucida 1 365 267375 0 species Pseudoalteromonas marina 1 569 161398 0 Pseudoalteromonas phenolica species 1 species Pseudoalteromonas tetraodonis 43659 0 557 1 430 28107 0 Pseudoalteromonas espejiana species 1 0 314281 Pseudoalteromonas tunicata species 718 560 0 43657 species Pseudoalteromonas luteoviolacea 1 1 509 Pseudoalteromonas issachenkonii species 152297 0 412 228 0 species Pseudoalteromonas haloplanktis 1 1 483 species Pseudoalteromonas arctica 0 394751 Psychromonadaceae family 267894 0 1300 1 4 3 2 genus 0 67572 1296 499 2614957 0 no rank 1 1 0 314282 species Psychromonas sp. CNPT3 499 1 Psychromonas ingrahamii species 0 357794 797 1 3585 267889 0 Colwelliaceae family 9 12 2 2 496 1 Thalassotalea genus 1518149 0 494 1763536 0 species Thalassotalea crassostreae 1 0 28228 genus Colwellia 1 3077 6 44 3 1481 0 196834 no rank Colwellia sp. PAMC 20917 species 0 1816218 673 1 436 0 58049 species Colwellia sp. MT41 1 1 species Colwellia sp. PAMC 21821 0 1816219 372 1 808 species Colwellia psychrerythraea 28229 0 744 1967665 0 species Colwellia beringensis 1 1 24912 0 72275 Alteromonadaceae family 30 192 658 1 Agarivorans genus 0 261825 20 2 638 Agarivorans gilvus species 680279 0 1 5714 1 genus Alteromonas 226 0 45 10 0 28108 species Alteromonas macleodii 1051 1 0 287094 Alteromonas addita species 424 1 2614992 0 no rank 1591 3 1 species Alteromonas sp. RW2A1 1917158 0 559 501 1777491 0 species Alteromonas sp. Mac1 1 531 0 2058133 Alteromonas sp. MB-3u-76 species 1 1 534 Alteromonas australica species 0 589873 1 species Alteromonas mediterranea 0 314275 971 408 Alteromonas naphthalenivorans species 715451 0 1 Alteromonas stellipolaris species 233316 0 690 1 11 3 983 1 Glaciecola genus 0 89404 440 species Glaciecola nitratireducens 0 300231 1 1 no rank 0 2618684 532 1 0 983545 Glaciecola sp. 4H-3-7+YE-5 species 532 3 2 514 1 genus Paraglaciecola 1621534 0 1 511 Paraglaciecola psychrophila species 326544 0 2 24 1751872 0 Lacimicrobium genus 1 1657 Lacimicrobium alkaliphilum species 1526571 0 1633 1 10 150 1 15194 2742 0 Marinobacter genus 0 83889 no rank 4653 3 1634 1671721 0 Marinobacter sp. CP1 species 1 1 961 490759 0 species Marinobacter sp. BSs20148 species Marinobacter sp. LQ44 1749259 0 2058 1 1 1668 species Marinobacter similis 1420916 0 species Marinobacter hydrocarbonoclasticus 2743 0 2850 1 1470 Marinobacter adhaerens species 1033846 0 1 1127 0 330734 species Marinobacter psychrophilus 1 1 2002 species Marinobacter salarius 1420917 0 1 Marinobacter salinus species 0 1874317 1274 36 6 Idiomarinaceae family 267893 0 2174 1 10 5 Idiomarina genus 135575 0 2138 1 1109 2614829 0 no rank 2 677 Idiomarina sp. OT37-5b species 0 2100422 1 432 0 2055892 Idiomarina sp. X4 species 1 1 593 0 135577 species Idiomarina loihiensis Idiomarina piscisalsi species 1096243 0 426 1 163 25 19657 1 family Shewanellaceae 0 267890 0 22 Shewanella genus 1 19494 24 368 1 597 Shewanella piezotolerans species 404011 0 640 70864 0 Shewanella pealeana species 1 species Shewanella japonica 93973 0 594 1 1 Shewanella bicestrii species 0 2018305 607 1 60961 0 species Shewanella woodyi 704 1 species Shewanella putrefaciens 24 0 1311 1 628 species Shewanella halifaxensis 271098 0 1 56812 0 Shewanella frigidimarina species 756 779 species Shewanella sediminis 271097 0 1 1 0 359303 Shewanella loihica species 1412 1 192073 0 Shewanella denitrificans species 578 1 872 0 60217 species Shewanella violacea 1 260364 0 species Shewanella marisflavi 686 1 2135 0 62322 species Shewanella baltica 3998 no rank 196818 0 6 1 60481 0 species Shewanella sp. MR-7 663 517 0 60480 Shewanella sp. MR-4 species 1 538 0 2029986 species Shewanella sp. WE21 1 1 352 0 2059264 species Shewanella sp. Pdp11 0 94122 Shewanella sp. ANA-3 species 1019 1 909 351745 0 species Shewanella sp. W3-18-1 1 1 1273 0 60478 Shewanella amazonensis species species Shewanella oneidensis 70863 0 757 1 1 799 species Shewanella psychrophila 225848 0 1 934 0 267891 family Moritellaceae 3 8 11 2 926 1 genus Moritella 0 58050 species Moritella viscosa 80854 0 915 1 1706369 0 Cellvibrionales order 1 16487 28 149 11 58 0 1706371 Cellvibrionaceae family 1 7105 653 0 316625 genus 1 Saccharophagus degradans species 86304 0 653 1 Teredinibacter genus 2425 0 741 1 7 2 1 734 2426 0 Teredinibacter turnerae species 1 611 genus 0 2036021 species Agarilytica rhodophyticola 1737490 0 611 1 23 2 genus Simiduia 447467 0 1175 1 1 1152 447471 0 species Simiduia agarivorans 1 3867 0 10 genus Cellvibrio 4 57 1 1326 155077 0 Cellvibrio japonicus species 2 2484 no rank 2624793 0 1 0 1945512 species Cellvibrio sp. PSBB023 929 0 1987723 Cellvibrio sp. PSBB006 species 1555 1 91 5 4445 1 family Microbulbiferaceae 0 1706373 4354 1 Microbulbifer genus 48073 0 53 4 0 1769779 species Microbulbifer aggregans 1694 1 1403 Microbulbifer agarilyticus species 260552 0 1 Microbulbifer thermotolerans species 0 252514 1204 1 2393 1 family Halieaceae 1706372 0 40 4 64 3 Halioglobus genus 0 1217416 2353 1 1 0 930806 Halioglobus pacificus species 1313 species Halioglobus japonicus 0 930805 976 1 1 2395 0 1706375 Spongiibacteraceae family 7 18 2 19 0 630749 genus Spongiibacter 1 518 499 0 2631504 no rank 1 1 499 1620392 0 Spongiibacter sp. IMCC21906 species 1434050 0 genus Zhongshania 1 749 2 20 1 Zhongshania aliphaticivorans species 0 1470434 729 0 1084558 genus Oceanicoccus 1 1110 2 37 1 1073 716816 0 Oceanicoccus sagamiensis species 15 32 25237 1 Pasteurellales order 135625 0 25222 1 family Pasteurellaceae 0 712 302 31 6 3 Pasteurella genus 745 0 2659 1 747 0 species Pasteurella multocida 2050 1 603 0 754 species Pasteurella dagmatis 1 2 1 155493 0 genus Gallibacterium 1 1160 1159 0 750 Gallibacterium anatis species 1 3 2 1538 1 genus Glaesserella 0 2094023 738 0 Glaesserella parasuis species 1535 1 1 1115 0 476528 Bibersteinia genus 2 6 1 47735 0 species Bibersteinia trehalosi 1109 genus Mannheimia 75984 0 3013 1 11 4 1 0 75985 species Mannheimia haemolytica 1089 1 1286 0 85404 species Mannheimia varigena 1 627 0 2645054 no rank Mannheimia sp. USDA-ARS-USMARC-1261 species 1432056 0 627 1 0 214906 genus 641 1 0 731 species Histophilus somni 641 1 Haemophilus genus 724 0 7006 1 54 6 1 1601 249188 0 Haemophilus pittmaniae species 1 0 727 Haemophilus influenzae species 2019 1 673 0 730 [Haemophilus] ducreyi species 2278 0 729 Haemophilus parainfluenzae species 1 1 381 0 2609962 no rank 381 712310 0 species Haemophilus sp. oral taxon 036 1 17 5 3833 1 Actinobacillus genus 713 0 1 Actinobacillus suis species 0 716 645 1 species Actinobacillus pleuropneumoniae 715 0 1091 1 1331 Actinobacillus succinogenes species 67854 0 0 718 Actinobacillus equuli species 749 1 1 1153 697331 0 genus Basfia 2 6 1147 [Mannheimia] succiniciproducens species 157673 0 1 1 2802 0 416916 genus Aggregatibacter 3 117 1514 0 732 Aggregatibacter aphrophilus species 1 1 0 714 species Aggregatibacter actinomycetemcomitans 1171 430 29 order Aeromonadales 0 135624 73224 1 family Aeromonadaceae 84642 0 72794 1 675 28 3 5 225143 0 Oceanisphaera genus 1 1263 1 species Oceanisphaera sp. AMac2203 1903694 0 348 1 Oceanisphaera profunda species 1416627 0 910 52 2 5246 1 genus Zobellella 347533 0 5194 species Zobellella denitrificans 347534 0 1 2 26 1 1721 0 43947 Tolumonas genus 0 43948 species Tolumonas auensis 1695 1 1 60357 0 642 genus Aeromonas 18 4418 1 13686 644 0 species Aeromonas hydrophila 1 948519 0 species Aeromonas rivipollensis 2249 8 18055 0 257493 no rank species Aeromonas sp. ASNIH1 0 1636606 2039 1 2174 0 2033033 species Aeromonas sp. CU5 1 Aeromonas sp. ASNIH7 species 0 1920107 2181 1 1 2200 Aeromonas sp. ASNIH3 species 0 1636608 2414 0 2033032 Aeromonas sp. CA23 species 1 1 2510 1758179 0 Aeromonas sp. ASNIH5 species species Aeromonas sp. ASNIH2 0 1636607 2150 1 species Aeromonas sp. ASNIH4 1636609 0 2387 1 1 species Aeromonas dhakensis 0 196024 2541 1 2544 0 652 species Aeromonas schubertii 1 6137 654 0 species Aeromonas veronii 1 2251 648 0 species Aeromonas caviae 1 651 0 species Aeromonas media 1969 species Aeromonas aquatica 0 558964 2594 1 1 645 0 species Aeromonas salmonicida 3913 23 2 genus Oceanimonas 129577 0 3532 1 1 3509 no rank 0 2636315 1 3509 511062 0 species Oceanimonas sp. GK1 0 580370 Zetaproteobacteria class 1 2993 6 2 5 59 1 2991 580371 0 order Mariprofundales 15 4 Mariprofundaceae family 0 580372 2932 1 genus Mariprofundus 377315 0 2917 1 7 3 1 1676 0 1921086 species Mariprofundus aestuarium Mariprofundus ferrinatatus species 0 1921087 1234 1 744831 1 class Alphaproteobacteria 28211 0 2683 563 1286 0 2800059 order 2 2 family 0 2800061 1286 2 38 1 1286 74317 0 genus Maricaulis 1248 Maricaulis maris species 0 74318 1 13 53 9683 1 order Rickettsiales 0 766 490 no rank 1699067 0 1 1 490 0 1528098 Rickettsiales bacterium Ac37b species 0 942 Anaplasmataceae family 1 4414 23 6 6 4 genus Neorickettsia 33993 0 533 1 106 species Neorickettsia helminthoeca 33994 0 1 951 0 species Neorickettsia sennetsu 134 1 1 950 0 species Neorickettsia risticii 287 731 1 genus Anaplasma 0 768 2 4 769 0 species Anaplasma centrale 250 1 1 328 species group 106179 0 328 0 948 Anaplasma phagocytophilum species 1 151 Anaplasma marginale species 0 770 1 30 6 1512 1 Ehrlichia genus 0 943 1 0 106181 no rank 187 1 0 391036 species Ehrlichia sp. HF 187 4 species group 0 106178 1295 1 0 779 Ehrlichia ruminantium species 686 1 198 944 0 species Ehrlichia canis 210 Ehrlichia muris species 35795 0 1 201 0 945 Ehrlichia chaffeensis species 1 0 952 tribe 1632 8 8 15 1 1632 953 0 genus Wolbachia 1617 0 2640676 no rank 7 1 122 Wolbachia endosymbiont of Onchocerca ochengi species 0 100901 1 524 77038 0 species Wolbachia endosymbiont of Drosophila simulans 1 246 Wolbachia sp. wRi species 0 66084 1 0 80849 Wolbachia endosymbiont of Brugia malayi species 237 1 species Wolbachia endosymbiont of Drosophila melanogaster 0 163164 221 1 142 species Wolbachia endosymbiont of Cimex lectularius 0 246273 1 125 Wolbachia endosymbiont of Onchocerca volvulus species 77551 0 1 4598 775 0 family Rickettsiaceae 26 6 24 33988 0 tribe 4218 1 0 69474 genus 431 431 784 0 Orientia tsutsugamushi species 1 330 23 3787 1 Rickettsia genus 0 780 17 species group 0 114277 1763 Rickettsia akari species 0 786 203 1 1 65 0 781 Rickettsia conorii species 485 0 42862 Rickettsia felis species 1 783 0 Rickettsia rickettsii species 33 1 41 Rickettsia slovaca species 35794 0 1 1 35788 0 species Rickettsia africae 61 35792 0 species Rickettsia parkeri 36 1 1 Rickettsia heilongjiangensis species 226665 0 26 1 13 Rickettsia philipii species 0 1105106 Rickettsia massiliae species 0 35791 51 1 1 48 Rickettsia montanensis species 0 33991 1 35790 0 Rickettsia japonica species 32 64 0 47589 species Rickettsia peacockii 1 140 species Rickettsia monacensis 109232 0 1 1 33992 0 species Rickettsia rhipicephali 137 92 species Rickettsia amblyommatis 0 33989 1 1 236 787 0 Rickettsia australis species 2 588 species group 0 114292 244 782 0 species Rickettsia prowazekii 1 1 785 0 species Rickettsia typhi 344 1 464 no rank 114295 0 464 337479 0 Rickettsia endosymbiont of Bemisia tabaci species 1 2 642 1129742 0 species group 463 33990 0 Rickettsia bellii species 1 179 0 788 species Rickettsia canadensis 1 genus 2115980 0 374 1 1 Candidatus Phycorickettsia trachydisci species 2115978 0 374 family 0 1328881 168 2 168 1 Candidatus Midichloria genus 411566 0 4 2 1 164 species Candidatus Midichloria mitochondrii 0 234827 212 3382 0 356 Rhizobiales order 1 321213 33 4 5183 1 family Chelatococcaceae 2036754 0 3 121 28209 0 genus Chelatococcus 1 5150 1 0 444444 Chelatococcus daeguensis species 1871 1 no rank 2638111 0 3158 3158 0 1702325 Chelatococcus sp. CO-6 species 1 45404 0 Beijerinckiaceae family 1 2462 5 45 1 1176 120652 0 genus Methylocella 2 14 1 1162 species Methylocella silvestris 199596 0 1 1241 532 0 genus Beijerinckia 2 7 1 1234 Beijerinckia indica species 533 0 22991 1 family Hyphomicrobiaceae 0 45401 170 19 4 113 0 46913 genus Devosia 1 7746 7633 no rank 196773 0 3 Devosia sp. I507 species 2083786 0 1295 1 1643450 0 species Devosia sp. H5989 2859 1 1 1736675 0 species Devosia sp. A16 3479 2 160 1 2580 0 29407 Rhodoplanes genus 2420 0 2619116 no rank 1 1 species Rhodoplanes sp. Z2-YC6860 0 674703 2420 Pelagibacterium genus 0 1082930 1470 1 30 2 531813 0 Pelagibacterium halotolerans species 1440 1 2 35 1068 0 genus Rhodomicrobium 1 1377 1 Rhodomicrobium vannielii species 1069 0 1342 Hyphomicrobium genus 81 0 6311 1 51 4 1 no rank 0 2619925 1921 1 Hyphomicrobium sp. MC1 species 717785 0 1921 1 2124 0 1427356 Hyphomicrobium nitrativorans species 2215 53399 0 Hyphomicrobium denitrificans species 1 2 19 119044 0 genus Filomicrobium 1 973 954 0 1608628 Candidatus Filomicrobium marinum species 1 2 55 1 2364 59282 0 genus Blastochloris 0 1079 species Blastochloris viridis 2309 1 27 6 5065 1 Methylocystaceae family 0 31993 0 133 genus Methylocystis 1 2688 3 96 Methylocystis bryophila species 0 655015 1507 1 1085 2625913 0 no rank 1 Methylocystis sp. SC2 species 0 187303 1085 1 genus Methylosinus 425 0 2350 1 96 2 1 2254 426 0 species Methylosinus trichosporium family Brucellaceae 0 118882 11962 1 46 20 5 51 1 6487 528 0 Ochrobactrum genus 571256 0 Ochrobactrum pituitosum species 1585 1 1501 0 271865 species Ochrobactrum sp. A44 1 1466 0 419475 Ochrobactrum pseudogrignonense species 1 1 1884 Ochrobactrum anthropi species 529 0 1 5429 234 0 Brucella genus 14 2271 1 267 120577 0 species Brucella ceti no rank 2632610 0 1232 4 1 1844051 0 species Brucella sp. 09RB8910 333 75 Brucella sp. 2002734562 species 1891098 0 1 1149952 0 Brucella sp. 09RB8471 species 433 1 1885919 0 Brucella sp. 141012304 species 391 1 1 263 species Brucella pinnipedialis 0 120576 396 0 981386 species Brucella vulpis 1 1 species Brucella microti 0 444163 97 Brucella melitensis species 0 29459 195 1 1 271 Brucella canis species 36855 0 species Brucella abortus 235 0 130 1 1 species Brucella ovis 0 236 94 species Brucella suis 29461 0 213 1 1 6565 772 0 Bartonellaceae family 18 14 54 17 6551 1 genus Bartonella 773 0 Bartonella vinsonii species 0 33047 335 1 6 no rank 0 2645622 1388 1 1933906 0 species Bartonella sp. JB15 282 1 0 1933904 species Bartonella sp. WD16.2 231 0 1933907 species Bartonella sp. JB63 282 1 1 205 515256 0 species Bartonella sp. 1-1C 201 1933910 0 Bartonella sp. A1379B species 1 1 species Bartonella sp. Raccoon60 0 1933912 187 1 236 species Bartonella bacilliformis 774 0 1 352 Bartonella quintana species 0 803 1 653 85701 0 Bartonella tribocorum species species Bartonella grahamii 0 33045 610 1 1 315 1318743 0 species Bartonella ancashensis 38323 0 Bartonella henselae species 362 1 1 Bartonella clarridgeiae species 0 56426 457 1 301 species Bartonella australis 0 388640 1 1488 1686310 0 Bartonella apis species 1 61793 0 41294 family Bradyrhizobiaceae 26 629 18 2 genus Variibacter 1649510 0 1229 1 1211 Variibacter gotjawalensis species 0 1333996 1 5 205 85413 0 genus Bosea 1 11686 0 1526658 Bosea vaviloviae species 3074 1 0 2653178 no rank 8407 3 1842539 0 Bosea sp. RAC05 species 3058 1 2696 0 2015316 species Bosea sp. AS-1 1 2653 species Bosea sp. PAMC 26642 0 1792307 1 14852 1 Rhodopseudomonas genus 1073 0 251 2 1 1076 0 species Rhodopseudomonas palustris 14601 25 3 2234 1 Nitrobacter genus 0 911 1 1133 0 912 Nitrobacter hamburgensis species 1076 913 0 species Nitrobacter winogradskyi 1 1 1593 40136 0 Oligotropha genus 2 12 40137 0 Oligotropha carboxidovorans species 1581 1 1022 11 genus Bradyrhizobium 0 374 29570 1 4172 species Bradyrhizobium japonicum 0 375 1 1 species Bradyrhizobium diazoefficiens 1355477 0 4370 15439 0 2631580 no rank 6 1 2197 376 0 Bradyrhizobium sp. species species Bradyrhizobium sp. CCGE-LA001 1223566 0 2659 1 species Bradyrhizobium sp. ORS 278 0 114615 2834 1 1 2401 115808 0 species Bradyrhizobium sp. ORS 285 1 2712 Bradyrhizobium sp. BTAi1 species 0 288000 1 2636 0 2057741 species Bradyrhizobium sp. SK17 1 1876 species Bradyrhizobium icense 1274631 0 2691 44255 0 species Bradyrhizobium oligotrophicum 1 Aurantimonadaceae family 0 255475 10144 1 73 7 Martelella genus 0 293088 7357 1 121 4 1 2376 species Martelella mediterranea 0 293089 1 2400 Martelella endophytica species 1486262 0 no rank 0 2629616 2460 1 1 2460 0 686597 Martelella sp. AD-3 species 0 414371 genus Aureimonas 1 2714 2 28 1 no rank 2615206 0 2686 2686 0 1349819 Aureimonas sp. AU20 species 1 1100 55 104838 1 Rhizobiaceae family 82115 0 59 2 4043 1 genus Shinella 0 323620 no rank 0 2643062 3984 1 1 3984 species Shinella sp. HZN7 0 879274 227290 0 no rank 74779 36 46 2 3995 1 genus Neorhizobium 1525371 0 3949 0 399 Neorhizobium galegae species 1 3596 27 Rhizobium genus 379 0 50637 1 1 398 0 Rhizobium tropici species 1696 1 0 384 Rhizobium leguminosarum species 11495 1 2626 56730 0 species Rhizobium gallicum 1 5987 Rhizobium etli species 0 29449 21 0 2613769 no rank 21825 0 1703966 Rhizobium sp. N731 species 340 1 species Rhizobium sp. N324 1703969 0 1560 1 2 0 1703960 species Rhizobium sp. N113 1 1 1448 Rhizobium sp. CIAT894 species 2020312 0 1 1632 Rhizobium sp. NT-26 species 1125847 0 1 species Rhizobium sp. Y9 1914541 0 1983 species Rhizobium sp. 10195 2028343 0 2093 1 1 species Rhizobium sp. N741 0 1703967 15 species Rhizobium sp. ACO-34A 1571470 0 2441 1 Rhizobium sp. N6212 species 0 1703965 8 1 285 0 2020313 species Rhizobium sp. TAL182 1 2056 0 1869170 Rhizobium sp. S41 species 1 1077 Rhizobium sp. NXC14 species 0 1981173 1 340 species Rhizobium sp. N1314 1703961 0 1 1 species Rhizobium sp. N871 1703968 0 10 1 1583 0 2048897 Rhizobium sp. NXC24 species 1 Rhizobium sp. IRBG74 species 0 424182 2182 1 1410 0 2020311 species Rhizobium sp. Kim5 species Rhizobium sp. N621 0 1703964 8 1 1345 0 1301032 species Rhizobium sp. IE4771 1 1 7 Rhizobium sp. N1341 species 1703962 0 1 3412 species Rhizobium phaseoli 0 396 7 367 0 357 Agrobacterium genus 1 20147 1 2343 Agrobacterium rhizogenes species 0 359 11244 1183400 0 species group 2 1 0 358 Agrobacterium tumefaciens species 8911 1 2333 0 1176649 Agrobacterium fabrum species 2632611 0 no rank 3892 2 1 1901 1842536 0 Agrobacterium sp. RAC06 species Agrobacterium sp. H13-3 species 0 861208 1991 1 1 373 0 Agrobacterium vitis species 2301 1 1468 34019 0 genus Liberibacter 6 31 1 34021 0 Candidatus Liberibacter asiaticus species 229 1 species Candidatus Liberibacter solanacearum 556287 0 194 Candidatus Liberibacter americanus species 309868 0 249 1 1 239 Candidatus Liberibacter africanus species 0 34020 526 1273132 0 species Liberibacter crescens 1 23448 227292 0 no rank 10 19078 1 Sinorhizobium genus 0 28105 560 7 no rank 2613772 0 4476 2 0 1842534 Sinorhizobium sp. RAC02 species 2554 1 1 794846 0 species Sinorhizobium sp. CCBAU 05631 1922 1 0 110321 species Sinorhizobium medicae 1806 1 2514 Sinorhizobium americanum species 194963 0 4352 0 382 Sinorhizobium meliloti species 1 5370 species group 0 663276 1 1 5370 species Sinorhizobium fredii 0 380 4370 1 Ensifer genus 0 106591 34 3 2410 Ensifer adhaerens species 0 106592 1 1926 0 716925 species Ensifer sojae 1 0 335928 Xanthobacteraceae family 1 10238 7 92 2 48 152053 0 Starkeya genus 1 2665 1 species Starkeya novella 921 0 2617 92 2 Xanthobacter genus 0 279 3746 1 1 species Xanthobacter autotrophicus 280 0 3654 2 85 0 6 Azorhizobium genus 1 3735 3650 species Azorhizobium caulinodans 7 0 1 6 5407 119042 0 no rank 1686 1 Methyloceanibacter genus 1484898 0 34 2 1 Methyloceanibacter caenitepidi species 0 1384459 1652 1734920 0 Pseudorhodoplanes genus 1 1512 2 28 1 Pseudorhodoplanes sinuspersici species 1235591 0 1484 60 2 genus Hartmannibacter 1572860 0 2209 1 1 species Hartmannibacter diazotrophicus 1482074 0 2149 5 3 1457 1 Rhodobiaceae family 0 119043 27 2 1452 1 genus Parvibaculum 256616 0 species Parvibaculum lavamentivorans 0 256618 1425 1 274 20 31578 1 Phyllobacteriaceae family 0 69277 0 31988 Aminobacter genus 1 2577 2 49 2528 Aminobacter aminovorans species 83263 0 1 1 1751 0 274591 Hoeflea genus 2 5 1 1746 2614931 0 no rank species Hoeflea sp. IMCC20628 0 1620421 1746 1 28100 0 genus Phyllobacterium 1 1627 2 16 species Phyllobacterium zundukense 0 1867719 1611 1 22819 1 genus Mesorhizobium 68287 0 551 9 1 3015 no rank 0 325217 278153 0 species Mesorhizobium sp. WSM1497 3015 1 1 Mesorhizobium australicum species 0 536018 2172 1 2671 species Mesorhizobium amorphae 0 71433 2634 species Mesorhizobium japonicum 0 2066070 1 1916 1670800 0 Mesorhizobium sp. B7 species 1 1 4091 39645 0 Mesorhizobium ciceri species 3000 381 0 Mesorhizobium loti species 1 1 2769 593909 0 Mesorhizobium opportunistum species Nitratireductor genus 0 245876 1243 1 21 2 species Nitratireductor basaltis 0 472175 1222 1 12 2 genus Chelativorans 449972 0 1287 1 1275 2643807 0 no rank 1 1 1275 266779 0 species Chelativorans sp. BNC1 220 15 family Methylobacteriaceae 119045 0 38148 1 genus 2282523 0 13310 3 1 species Methylobacterium zatmanii 29429 0 1957 7115 408 0 species Methylobacterium extorquens 1 1 species Methylobacterium populi 0 223967 4238 genus Microvirga 186650 0 3349 1 86 2 1882682 0 Microvirga ossetica species 3263 1 21269 1 Methylobacterium genus 0 407 1090 9 no rank 0 2615210 7151 3 1 1479019 0 species Methylobacterium sp. C1 2278 2009 Methylobacterium sp. AMS5 species 925818 0 1 1 2864 0 426117 Methylobacterium sp. 4-46 species 2128 Methylobacterium oryzae species 0 334852 1 1 3118 0 114616 species Methylobacterium nodulans 1 2734 Methylobacterium radiotolerans species 0 31998 1 3020 270351 0 species Methylobacterium aquaticum Methylobacterium phyllosphaerae species 418223 0 2028 1 22 4 1149 1 order Magnetococcales 0 1191478 3 3 Magnetococcaceae family 0 1191479 1127 1 1 1124 0 162171 genus Magnetococcus 2 5 1119 0 1124597 Magnetococcus marinus species 1 1761 1 Pelagibacterales order 0 54526 2 7 genus 0 2045213 280 1 1 280 0 1925548 species Candidatus Fonsibacter ubiquis 5 5 1655514 0 family Pelagibacteraceae 1 1479 2 626 198251 0 genus 1 0 198252 Candidatus Pelagibacter ubique species 272 2647897 0 no rank 354 1 Candidatus Pelagibacter sp. IMCC9063 species 1002672 0 354 1 no rank 0 1655516 848 2 0 859653 alpha proteobacterium HIMB5 species 501 1 744985 0 alpha proteobacterium HIMB59 species 347 1 3 255473 0 order 342 8 3 342 1 Parvularculaceae family 255474 0 0 208215 genus Parvularcula 1 334 2 2 species Parvularcula bermudensis 0 208216 332 1 1240 65 Rhodospirillales order 204441 0 118652 1 45401 1 Acetobacteraceae family 0 433 606 34 3 286 125216 0 genus Roseomonas 1 8657 1 257708 0 Roseomonas gilardii species 4474 1 no rank 0 2617492 3897 1 Roseomonas sp. FDAARGOS_362 species 2018065 0 3897 2 6 153497 0 Kozakia genus 1 1389 1383 species Kozakia baliensis 0 153496 1 1 1256 320496 0 Neoasaia genus 2 8 1 species Neoasaia chiangmaiensis 0 320497 1248 1 2913 364409 0 genus Granulibacter 2 32 1 2881 Granulibacter bethesdensis species 364410 0 59 3 4093 1 genus Gluconobacter 441 0 318683 0 species Gluconobacter albidus 1384 1 2650 species Gluconobacter oxydans 442 0 1 2 41 0 89583 Gluconacetobacter genus 1 2480 1 2439 Gluconacetobacter diazotrophicus species 0 33996 1459 1602345 0 genus 1 1 1459 species Parasaccharibacter apium 0 1510841 5 2 Asaia genus 91914 0 1131 1 Asaia bogorensis species 0 91915 1126 1 128 5 8208 1 genus Komagataeibacter 0 1434011 1 33995 0 Komagataeibacter europaeus species 1474 1 1292 1177712 0 Komagataeibacter medellinensis species 1 species Komagataeibacter nataicola 0 265960 1518 3796 28448 0 Komagataeibacter xylinus species 1 Acidiphilium genus 522 0 3520 1 167 3 1 0 62140 species Acidiphilium multivorum 1617 1736 0 524 Acidiphilium cryptum species 1 9689 1 genus Acetobacter 434 0 99 8 1316 species Acetobacter tropicalis 104102 0 1 1 753 Acetobacter pomorum species 65959 0 1 1244 Acetobacter persici species 0 1076596 723 1633874 0 species Acetobacter oryzifermentans 1 1 subgenus 151157 0 1307 Acetobacter aceti species 435 0 1307 1 1 1033 species Acetobacter senegalensis 446692 0 3214 438 0 species Acetobacter pasteurianus 1 Rhodospirillaceae family 41295 0 72011 1 1046 30 1 25657 191 0 genus Azospirillum 5 477 1 species Azospirillum thiophilum 528244 0 4799 1 0 193 Azospirillum lipoferum species 9629 1 species Azospirillum brasilense 0 192 8389 2363 species Azospirillum humicireducens 1226968 0 1 1081 0 Rhodospirillum genus 1 6609 3 55 1 3743 Rhodospirillum centenum species 34018 0 1 2811 Rhodospirillum rubrum species 1085 0 8 2 1660 1 genus Magnetospira 1182780 0 1 1652 no rank 0 2685734 1288970 0 species Magnetospira sp. QH-2 1652 1 5 489 13134 0 genus Magnetospirillum 1 18668 1 4324 0 84159 Magnetospirillum magneticum species 2617991 0 no rank 9143 2 1 4524 0 1663591 Magnetospirillum sp. XM-1 species 4619 0 1639348 species Magnetospirillum sp. ME-1 1 55518 0 species Magnetospirillum gryphiswaldense 4712 1 521 1263978 0 genus 1 1 521 0 1263979 species Candidatus Endolissoclinum faulkneri 2 72 0 1543705 genus Nitrospirillum 1 5706 1 Nitrospirillum amazonense species 0 28077 5634 2 23 0 1543704 genus Niveispirillum 1 3071 3048 1612173 0 species Niveispirillum cyanobacteriorum 1 15 2 1902 1 genus Pararhodospirillum 1612157 0 species Pararhodospirillum photometricum 0 1084 1887 1 2 53 171436 0 genus Tistrella 1 3945 1 3892 species Tistrella mobilis 0 171437 2 3 1 506 0 1804663 Haematospirillum genus 1 503 Haematospirillum jordaniae species 0 1549855 40 3 Thalassospira genus 168934 0 2720 1 1501 species Thalassospira sp. CSC3H3 0 2048283 1 1 species Thalassospira xiamenensis 220697 0 1179 94 785 1 129035 0 204455 Rhodobacterales order 93 2737 1 128250 0 31989 Rhodobacteraceae family 5 2 Tateyamaria genus 0 299261 1526 1 1521 species Tateyamaria omphalii 299262 0 1 2 11 0 1579315 genus Halocynthiibacter 1 531 1 species Halocynthiibacter arcticus 0 1579316 520 5 39 875170 0 Celeribacter genus 1 6417 1 0 1758178 species Celeribacter ethanolicus 1557 species Celeribacter manganoxidans 1411902 0 1846 1 1397108 0 Celeribacter marinus species 592 1 2383 0 1208324 Celeribacter indicus species 1 1 6772 0 34008 genus Rhodovulum 4 116 2 3860 2631432 0 no rank Rhodovulum sp. P5 species 0 1564506 2013 1 1 1847 0 308754 Rhodovulum sp. MB263 species 2796 35806 0 species Rhodovulum sulfidophilum 1 1284657 0 Planktomarina genus 1 538 2 4 1 534 species Planktomarina temperata 1284658 0 1778 2211641 0 genus 1 1778 species Loktanella vestfoldensis 245188 0 1 Pelagibaca genus 360528 0 2920 1 15 2 1 1250539 0 species Pelagibaca abyssi 2905 6 2 genus Defluviimonas 1097466 0 2734 1 1 species Defluviimonas alba 0 1335048 2728 genus Octadecabacter 53945 0 2403 1 27 4 Octadecabacter antarcticus species 0 1217908 735 1 1 825 0 1458307 Octadecabacter temperatus species species Octadecabacter arcticus 53946 0 816 1 1 1716 0 74032 Antarctobacter genus 2 6 1 species Antarctobacter heliothermus 0 74033 1710 302 9 Paracoccus genus 265 0 20577 1 1 2681 34004 0 Paracoccus aminovorans species 1925 no rank 246570 0 1 1 0 1529068 species Paracoccus sp. BM15 1925 Paracoccus sp. CBA4604 species 0 2065379 2086 1 1 Paracoccus yeei species 0 147645 4011 1 3169 species Paracoccus denitrificans 266 0 0 1945662 species Paracoccus contaminans 1958 1 1 2072 34003 0 species Paracoccus aminophilus 2373 species Paracoccus zhejiangensis 1077935 0 1 2 2657 58840 0 no rank 1688 2033435 0 Rhodobacteraceae bacterium QY30 species 1 Rhodobacteraceae bacterium species 0 1904441 969 1 2 2 2511 1 Leisingera genus 0 191028 133924 0 species Leisingera methylohalidivorans 2509 1 0 58842 genus Sagittula 1 3904 2 32 3872 2624628 0 no rank 1 1 Sagittula sp. P11 species 0 2009329 3872 genus Thalassococcus 436357 0 4 1 2 3 1759396 0 genus Marivivens 1 879 0 2622455 no rank 876 1 1 876 0 1920883 Marivivens sp. JLT3646 species 5 125 1 11718 0 1060 genus Rhodobacter 2300 0 1061 Rhodobacter capsulatus species 1 0 196779 no rank 3469 2 1 2154 2033869 0 Rhodobacter sp. CZR27 species 1 1850250 0 species Rhodobacter sp. LPB0142 1315 1 5824 Rhodobacter sphaeroides species 1063 0 2 5986 genus 263377 0 no rank 0 2640570 2678 1 2678 0 1792508 Yangia sp. CCB-MM3 species 1 1 1229727 0 species Thiobacimonas profunda 3308 1 2868 92944 0 genus Ketogulonicigenium 3 53 1333 0 92947 Ketogulonicigenium robustum species 1 1482 species Ketogulonicigenium vulgare 92945 0 1 2 17 0 74030 genus Roseovarius 1 1355 1338 0 215743 Roseovarius mucosus species 1 102 4 Labrenzia genus 478070 0 6442 1 2 4112 no rank 0 2648686 2294 1674922 0 species Labrenzia sp. CP4 1 1 species Labrenzia sp. VG12 2021862 0 1818 2228 Labrenzia aggregata species 187304 0 1 2 15 1 2455 0 1609958 Confluentimicrobium genus 2440 2643318 0 no rank 1 1 0 1609966 Confluentimicrobium sp. EMB200-NS6 species 2440 15 2 genus Rhodobaca 0 119541 1159 1 1144 0 441209 species Rhodobaca barguzinensis 1 309512 0 genus Dinoroseobacter 1 1786 2 5 1 Dinoroseobacter shibae species 0 215813 1781 2 132 0 367771 genus Marinovum 1 2838 42444 0 species Marinovum algicola 2706 1 3 23 1 4199 97050 0 Ruegeria genus 1368 2625375 0 no rank 1 Ruegeria sp. TM1040 species 0 292414 1368 1 0 89184 Ruegeria pomeroyi species 2808 1 5 139 1 11037 302485 0 genus Phaeobacter 1 2714 Phaeobacter piscinae species 1580596 0 Phaeobacter inhibens species 0 221822 3873 1 1 1052 Phaeobacter porticola species 0 1844006 3259 Phaeobacter gallaeciensis species 0 60890 1 Roseibacterium genus 159345 0 1604 1 7 2 1 Roseibacterium elongatum species 159346 0 1597 2 6 1 1333 285107 0 Thioclava genus species Thioclava nitratireducens 1915078 0 1327 1 3 7 1 2376 0 2433 genus Roseobacter 1 0 42443 Roseobacter litoralis species 1067 1302 Roseobacter denitrificans species 0 2434 1 genus 0 1649279 1432 1 1432 0 379347 species Ruegeria mobilis 1 0 227873 genus Pannonibacter 1 4158 2 53 4105 121719 0 species Pannonibacter phragmitetus 1 4 0 245186 Loktanella genus 1 0 188905 Jannaschia genus 1 1122 2 21 1101 0 2645469 no rank 1 1 1101 species Jannaschia sp. CCS1 0 290400 0 60136 genus Sulfitobacter 1 3774 3 11 2077 no rank 0 196795 1 2077 1917485 0 species Sulfitobacter sp. AM1-D1 1 1 1686 0 1402135 Sulfitobacter pseudonitzschiae species 7479 0 82117 no rank 8 116 2 2890 1 genus Phreatobacter 0 1632780 0 1868589 Phreatobacter sp. S-12 species 2774 1 2 662 62654 0 clade 662 1 Candidatus Puniceispirillum genus 0 767891 1 2 1 661 Candidatus Puniceispirillum marinum species 0 767892 102 2 2274 1 genus Polymorphum 991903 0 1 2172 species Polymorphum gilvum 991904 0 2 13 213485 0 Micavibrio genus 1 1653 Micavibrio aeruginosavorus species 0 349221 1640 1 1 36176 204458 0 Caulobacterales order 20 342 76892 0 family Caulobacteraceae 1 35834 19 639 7 202 41275 0 genus Brevundimonas 1 12866 0 74313 species Brevundimonas subvibrioides 2114 1 1 1578 species Brevundimonas vesicularis 0 41276 6863 0 2622653 no rank 3 1 2099 1827469 0 Brevundimonas sp. GW460-12-10-14-LB2 species 1 2570 Brevundimonas sp. DS20 species 1532555 0 1 species Brevundimonas sp. LM2 0 1938605 2194 1 2109 588932 0 species Brevundimonas naejangsanensis 1 no rank 81440 0 1029 1029 Caulobacteraceae bacterium OTSz_A_272 species 1759059 0 1 1 1702 0 76890 Asticcacaulis genus 2 15 1687 species Asticcacaulis excentricus 0 78587 1 0 75 genus Caulobacter 1 16774 6 195 1 2966 species Caulobacter mirabilis 69666 0 0 88688 species Caulobacter segnis 2226 1 4263 2648921 0 no rank 1 4263 species Caulobacter sp. K31 0 366602 1 1 0 69395 species Caulobacter henricii 1877 5247 155892 0 Caulobacter vibrioides species 1 Phenylobacterium genus 20 0 2824 1 45 2 1 284016 0 species Phenylobacterium zucineum 2779 1921002 0 Holosporales order 1 1239 7 5 782 44746 0 family 1 1 no rank 0 204454 782 782 species endosymbiont of Acanthamoeba sp. UWC8 86106 0 1 1 257 1777752 0 Candidatus Paracaedibacteraceae family 3 1 1 256 0 1521255 genus Candidatus Paracaedibacter 2 1 255 species Candidatus Paracaedibacter acanthamoebae 91604 0 1 family Caedimonadaceae 2100208 0 195 1 4 2 1 0 1509243 genus 191 Candidatus Nucleicultrix amoebiphila species 1509244 0 191 1 order 0 2800060 2537 5 0 69657 Hyphomonadaceae family 1 2537 5 56 2723 0 genus 421 1 421 2724 0 Hirschia baltica species 1 6 3 2060 1 Hyphomonas genus 0 85 1 0 2630699 no rank 791 791 species Hyphomonas sp. Mor2 0 1906738 1 1 species Hyphomonas neptunium 81032 0 1263 order Sphingomonadales 204457 0 111596 1 821 82 1425 59 Sphingomonadaceae family 0 41297 87278 1 447 15 27269 1 Sphingomonas genus 13687 0 1 Sphingomonas koreensis species 93064 0 1918 1 397260 0 species Sphingomonas sanxanigenens 2305 1 1609977 0 species Sphingomonas hengshuiensis 1588 2452 2 Sphingomonas wittichii species 0 160791 5146 1 1 0 1283312 strain Sphingomonas sp. DC-6 2694 1 1525 species Sphingomonas panacis 0 1560345 1 1904 species Sphingomonas melonis 0 152682 1906 0 1549858 species Sphingomonas taxi 1 196159 0 no rank 10530 6 1433 Sphingomonas sp. LM7 species 0 1938607 1 2355 0 745310 Sphingomonas sp. MM-1 species 1 1 1546 1327635 0 species Sphingomonas sp. Cra20 1 1400 0 1030157 species Sphingomonas sp. KC8 1 0 1961362 species Sphingomonas sp. NIC1 1753 1 2043 Sphingomonas sp. LK11 species 1390395 0 6781 1 genus Novosphingobium 0 165696 93 5 1636 0 205844 Novosphingobium pentaromativorans species 1 1 0 158500 species Novosphingobium resinovorum 2055 1516 no rank 0 2644732 1 1 1516 0 702113 species Novosphingobium sp. PP1Y 1 48935 0 Novosphingobium aromaticivorans species 1481 15 2 1461 1 Citromicrobium genus 72173 0 1 1446 2630544 0 no rank 1 1446 1634516 0 species Citromicrobium sp. JL477 105 2 1392 1 genus Zymomonas 541 0 0 542 Zymomonas mobilis species 1287 1 15 515 165695 0 genus Sphingobium 1 24852 6 9447 0 2611147 no rank 1309 1843368 0 Sphingobium sp. RAC03 species 1 0 484429 Sphingobium sp. YBL2 species 2297 1 1 species Sphingobium sp. TKS 1315974 0 1708 1 1483 0 407020 Sphingobium sp. MI1205 species 872 species Sphingobium sp. EP60837 0 1855519 1 1 1778 627192 0 Sphingobium sp. SYK-6 species Sphingobium yanoikuyae species 0 13690 1925 1 2114 332056 0 Sphingobium japonicum species 1 Sphingobium chlorophenolicum species 46429 0 1644 1 Sphingobium hydrophobicum species 0 1673076 2539 1 1 2092 0 332055 species Sphingobium indicum 1 1459 Sphingobium baderi species 1332080 0 1 76947 0 species Sphingobium herbicidovorans 1322 1 120107 0 species Sphingobium cloacae 1795 1 2245 0 1649486 genus Rhizorhabdus 2 21 2224 Rhizorhabdus dicambivorans species 0 1850238 1 10 406 165697 0 genus Sphingopyxis 1 14752 267128 0 species Sphingopyxis granuli 1564 1 4 4986 no rank 2614943 0 Sphingopyxis sp. MG species 1866325 0 1675 1 species Sphingopyxis sp. LPB0140 0 1913578 710 1 1 1156 species Sphingopyxis sp. 113P3 292913 0 1 1445 species Sphingopyxis sp. QXT-31 1357916 0 1 3257 0 33050 Sphingopyxis macrogoltabida species 1 1437 0 117207 Sphingopyxis alaskensis species 1 1299 33052 0 Sphingopyxis terrae species 1 Sphingopyxis fribergensis species 1515612 0 1803 1 2709685 0 genus 953 1 953 0 266812 species Sphingorhabdus flavimaris 2 20 1 2123 0 150203 Blastomonas genus 1 2626550 0 no rank 2103 2103 Blastomonas sp. RAC04 species 0 1842535 1 22 3 2441 1 Sphingorhabdus genus 0 1434046 no rank 2614947 0 2419 2 1 Sphingorhabdus sp. M41 species 0 1806885 1287 1 species Sphingorhabdus sp. YGSMI21 0 2077182 1132 1584 2685927 0 genus 1 0 1921510 species Sphingomonas sp. JJ-A5 1584 1 1 23497 0 335929 Erythrobacteraceae family 22 476 2154 2800681 0 genus 2 1 1429 Erythrobacter gangjinensis species 502682 0 725 0 1648404 Erythrobacter atlanticus species 1 6 0 2800788 no rank 6843 1 2717 1111 0 Porphyrobacter genus 3 91 2 2626 2683265 0 no rank 0 2023229 Porphyrobacter HT-58-2 species 1250 1 Porphyrobacter sp. LM 6 species 0 1896196 1376 1 217 3 4126 1 genus Erythrobacter 0 1041 1 1112 0 Porphyrobacter neustonensis species 1629 species Erythrobacter litoralis 39960 0 2280 1 215 4 3755 1 Altererythrobacter genus 0 361177 Altererythrobacter atlanticus species 1267766 0 1667 1 1 0 361183 species Altererythrobacter epoxidivorans 1281 592 476157 0 species Altererythrobacter ishigakiensis 1 1 genus 0 2800682 1615 1615 0 645517 Altererythrobacter namhicola species 1 1855416 0 genus 2060 2 1 Erythrobacter seohaensis species 266951 0 913 0 192812 Erythrobacter flavus species 1147 1 1178 2800685 0 genus 1 1178 0 543877 species Altererythrobacter marensis 1 3386 1 Croceicoccus genus 1295327 0 25 3 1 Croceicoccus marinus species 450378 0 1994 1348774 0 Croceicoccus naphthovorans species 1367 1 2 2030 0 2800686 genus 1 0 1982042 species Altererythrobacter mangrovi 1221 809 Altererythrobacter dongtanensis species 692370 0 1 11 5 0 1553900 class Oligoflexia 1 6378 1 4481 0 213481 Bdellovibrionales order 5 34 4 11 1 4447 0 213483 family Bdellovibrionaceae 32 3 4436 1 Bdellovibrio genus 958 0 1 3872 Bdellovibrio bacteriovorus species 959 0 1 Bdellovibrio exovorus species 453816 0 532 5 1 1 1892 0 2024979 Bacteriovoracales order 1 695 family 0 1652132 1 695 genus 1652133 0 1 97084 0 species Halobacteriovorax marinus 695 10 3 Bacteriovoracaceae family 0 263369 1196 1 1186 1 Bacteriovorax genus 0 146784 4 2 species Bacteriovorax stolpii 0 960 1182 1 1 0 2138240 phylum 453 453 0 2138243 class 1 1 order 0 2138246 453 1 453 family 0 2138247 1 453 genus 0 68335 453 species Coprothermobacter proteolyticus 0 35786 1 14354 phylum 0 508458 11 Synergistia class 0 649775 14354 1 85 11 43 10 14269 1 Synergistales order 0 649776 14226 1 Synergistaceae family 0 649777 783 9 2 41 0 508459 genus Cloacibacillus 1 8473 1 8432 Cloacibacillus porcorum species 1197717 0 1 950 49894 0 genus 950 Acetomicrobium mobile species 97477 0 1 525 1 Thermovirga genus 336260 0 1 2 1 524 0 336261 species Thermovirga lienii 81461 0 genus Thermanaerovibrio 1 2648 2 2 1 species Thermanaerovibrio acidaminovorans 81462 0 2646 0 81466 genus 847 1 1 847 Aminobacterium colombiense species 81468 0 200940 0 phylum 1598 8 8 2 1 1598 67799 0 class Thermodesulfobacteria 1 1596 0 188710 Thermodesulfobacteriales order 7 1 0 188711 Thermodesulfobacteriaceae family 1 1595 6 2 genus 444090 0 268 1 268 species Caldimicrobium thiodismutans 1653476 0 1 2 2 Thermodesulfatator genus 241192 0 430 1 1 0 171695 Thermodesulfatator indicus species 428 2 1740 0 genus 895 1 1741 0 Thermodesulfobacterium commune species 219 1 0 1295609 species Thermodesulfobacterium geofontis 676 14 phylum 40117 0 8462 14 78 203693 0 class Nitrospira 1 8462 82 13 Nitrospirales order 0 189778 8384 1 189779 0 Nitrospiraceae family 1 8302 12 80 16 4 2273 1 Leptospirillum genus 0 179 1 743 0 261386 species group 1 species Leptospirillum ferriphilum 178606 0 743 1 species group 0 261385 738 738 1660083 0 species Leptospirillum sp. Group II 'CF-1' 1 776 species group 655606 0 1 1 776 Leptospirillum ferrooxidans species 180 0 5 30 1 4822 1234 0 Nitrospira genus 954 1715989 0 Candidatus Nitrospira inopinata species 1 Nitrospira defluvii species 0 330214 1105 1 1 1709 42253 0 Nitrospira moscoviensis species Nitrospira japonica species 0 1325564 1024 1 28261 0 Thermodesulfovibrio genus 1 1127 2 2 Thermodesulfovibrio yellowstonii species 28262 0 1125 1 9 4054 phylum 200930 0 4054 1 class Deferribacteres 0 68337 17 9 15 8 order Deferribacterales 0 191393 4037 1 7 17 0 191394 Deferribacteraceae family 1 4022 2 2 53572 0 genus Deferribacter 1 822 species Deferribacter desulfuricans 0 197162 820 1 1 984 genus 0 2351 1 species Flexistipes sinusarabici 0 2352 984 2 6 0 117999 Denitrovibrio genus 1 1446 species Denitrovibrio acetiphilus 118000 0 1440 1 545865 0 genus 753 1 753 0 477976 species Calditerrivibrio nitroreducens 1 4 1930617 0 phylum 2142 4 2142 class 1962850 0 4 9 0 1962852 Calditrichales order 1 2142 Calditrichaceae family 1962854 0 2133 1 7 3 1 2126 187144 0 Caldithrix genus 2 1 0 187145 species Caldithrix abyssi 2125 1 17470 57723 0 phylum 20 1 1564 1562566 0 class Blastocatellia 3 18 Chloracidobacterium genus 458032 0 1546 1 87 2 1 1459 Chloracidobacterium thermophilum species 0 458033 15906 1 Acidobacteriia class 0 204432 245 17 0 204433 order Acidobacteriales 1 12412 12 161 11 148 204434 0 family Acidobacteriaceae 1 12251 2 36 0 658061 Candidatus Koribacter genus 1 2013 1 species Candidatus Koribacter versatilis 658062 0 1977 1 3725 0 940557 genus Granulicella 3 38 1820 species Granulicella mallensis 940614 0 1 1 1867 species Granulicella tundricola 940615 0 Terriglobus genus 392733 0 3931 1 6 3 1 0 392734 Terriglobus roseus species 2422 1 1503 870903 0 species Terriglobus saanensis 33973 0 genus Acidobacterium 1 2434 2 14 2420 Acidobacterium capsulatum species 0 33075 1 Solibacterales order 0 332160 3249 1 50 4 3 39 0 332161 family Solibacteraceae 1 3199 332162 0 Candidatus Solibacter genus 1 3160 2 21 0 332163 species Candidatus Solibacter usitatus 3139 1 1 11 Elusimicrobia phylum 74152 0 2982 1 681 1 Elusimicrobia class 641853 0 1 5 4 4 Elusimicrobiales order 641854 0 680 1 3 3 676 1 Elusimicrobiaceae family 641876 0 1 2 673 1 genus Elusimicrobium 0 423604 672 species Elusimicrobium minutum 0 423605 1 1 no rank 99260 0 418 1 167965 0 species uncultured Termite group 1 bacterium 418 447830 0 class 1882 4 1882 order 1783344 0 4 4 5 0 1783343 family Endomicrobiaceae 1 1882 1877 1 Endomicrobium genus 1408194 0 1 3 species Candidatus Endomicrobium trichonymphae 0 1408204 434 1 1 1442 Endomicrobium proavitum species 1408281 0 712 no rank 0 2323 3 1783234 0 clade 712 3 1 277 phylum 0 95818 1 no rank 0 1895827 277 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 2056494 0 277 1 435 95901 0 clade 2 2 class 2497643 0 435 2 435 order 2497644 0 2 435 0 2497645 family 2 2 genus Candidatus Babela 1551504 0 435 1 0 673862 Candidatus Babela massiliensis species 433 1 200783 0 phylum 7483 25 25 16 1 7483 187857 0 class Aquificae 5 11 0 1485951 order Desulfurobacteriales 1 1515 558314 0 family Desulfurobacteriaceae 1 1504 4 4 20 2 704 1 genus Thermovibrio 171868 0 684 Thermovibrio ammonificans species 228745 0 1 1 796 0 64159 genus 1 0 64160 species Desulfurobacterium thermolithotrophum 796 5952 1 order Aquificales 32069 0 5 19 3610 1 family Aquificaceae 64898 0 7 11 1 244 genus 0 939 244 0 940 Hydrogenobacter thermophilus species 1 1 259 genus 2713 0 1 259 0 63363 species Aquifex aeolicus 48 6 genus Hydrogenobaculum 0 168657 2548 1 5 2500 no rank 2622382 0 1 572 Hydrogenobaculum sp. SHO species 0 547145 Hydrogenobaculum sp. HO species 0 547144 572 1 212 species Hydrogenobaculum sp. Y04AAS1 380749 0 1 1 572 0 547143 species Hydrogenobaculum sp. 3684 species Hydrogenobaculum sp. SN 0 547146 572 1 2 552 0 75905 genus 303 species Thermocrinis ruber 0 75906 1 1 249 species Thermocrinis albus 136094 0 1 0 90150 no rank 401 1 401 genus 412592 0 412593 0 Thermosulfidibacter takaii species 401 1 1936 1 Hydrogenothermaceae family 224027 0 6 6 182899 0 Persephonella genus 1 563 2 2 309805 0 Persephonella marina species 561 1 3 3 1 1367 0 212790 Sulfurihydrogenibium genus 1 0 309806 Sulfurihydrogenibium azorense species 479 1 2619248 0 no rank 885 1 885 Sulfurihydrogenibium sp. YO3AOP1 species 0 436114 0 32066 phylum 222956 24 0 203490 class Fusobacteriia 1 222956 24 9 1 222947 0 203491 order Fusobacteriales 23 66 11563 1 Leptotrichiaceae family 0 1129771 23 10 27 5 genus Leptotrichia 32067 0 5914 1 4587 2633022 0 no rank 3 1 2526 712357 0 species Leptotrichia sp. oral taxon 212 1089 Leptotrichia sp. oral taxon 847 species 0 1785996 1 0 712368 Leptotrichia sp. oral taxon 498 species 972 1 1300 Leptotrichia buccalis species 0 40542 1 2 2 2488 1 genus Sebaldella 32068 0 0 826 species Sebaldella termitidis 2486 1 1 genus 0 34104 1566 1566 0 34105 species Streptobacillus moniliformis 1 1572 168808 0 genus 1 1 1572 species Sneathia amnii 0 187101 1 211318 203492 0 family Fusobacteriaceae 12 52 1 2065 167639 0 Ilyobacter genus 2 1 1 167642 0 Ilyobacter polytropus species 2064 74 9 genus Fusobacterium 0 848 209201 1 species Fusobacterium gonidiaformans 849 0 1977 1 1 species Fusobacterium hwasookii 0 1583098 2001 1 species Fusobacterium ulcerans 861 0 2515 1 181765 850 0 Fusobacterium mortiferum species 1 Fusobacterium necrophorum species 859 0 1350 3801 0 856 Fusobacterium varium species 1 Fusobacterium periodonticum species 860 0 6683 1 Fusobacterium nucleatum species 0 851 9035 1 59 phylum 0 203691 94111 59 286 1 94111 203692 0 class Spirochaetia 1 76445 136 0 order Spirochaetales 42 1408 0 1643685 Borreliaceae family 1 5950 17 5 1 3552 138 0 Borrelia genus 8 35 1 299 0 44449 species Borrelia recurrentis 260 143 0 species Borrelia anserina 1 1 781 141 0 Borrelia parkeri species 784 species Borrelia turicatae 0 142 1 1 374 species Borrelia hermsii 140 0 1 40834 0 Borrelia duttonii species 379 640 0 47466 Borrelia miyamotoi species 1 2393 1 genus Borreliella 0 64895 75 8 1 205 Borreliella valaisiana species 62088 0 1 664662 0 species Borreliella bavariensis 321 Borreliella burgdorferi species 0 139 274 1 1 Borrelia mayonii species 0 1674146 244 1 702 29519 0 Borreliella garinii species 164 species Borreliella bissettii 0 64897 1 1 species Borreliella afzelii 0 29518 408 601 24 Spirochaetaceae family 137 0 69087 1 12 2263 0 157 genus Treponema 1 54192 1 4855 221027 0 Treponema putidum species species Treponema pallidum 160 0 306 1 81028 0 species Treponema brennaborense 3850 1 1 305 Treponema paraluiscuniculi species 53435 0 1 Treponema azotonutricium species 150829 0 2707 4917 0 2638727 no rank 1 1 4917 species Treponema sp. OMZ 838 1539298 0 1 Treponema denticola species 158 0 2814 1323 species Treponema pedis 0 409322 1 215591 0 species Treponema caldarium 1472 1 1 Treponema primitia species 88058 0 3160 1 26220 0 167 species Treponema succinifaciens 4 42 0 399320 genus Sphaerochaeta 1 6260 1 2553 1131703 0 species Sphaerochaeta globosa 1 273376 0 Sphaerochaeta coccoides species 1796 1869 species Sphaerochaeta pleomorpha 1131707 0 1 1 2 1620 1 genus Sediminispirochaeta 0 1911556 1 1619 Sediminispirochaeta smaragdinae species 0 55206 62 3 genus Spirochaeta 0 146 4495 1 Spirochaeta thermophila species 0 154 2247 1 species Spirochaeta africana 0 46355 2186 1 1 1919 0 1616789 Salinispira genus 2 3 0 1307761 Salinispira pacifica species 1916 1 order Brachyspirales 1643686 0 12012 1 4 7 1 12008 143786 0 family Brachyspiraceae 6 644 0 29521 genus Brachyspira 1 11364 5 1002 1 2497 0 84378 species Brachyspira murdochii 1 1751 species Brachyspira intermedia 0 84377 0 159 Brachyspira hyodysenteriae species 2379 1 species Brachyspira pilosicoli 0 52584 3735 1 9 0 1643688 order 5368 1 5368 0 170 Leptospiraceae family 9 5 0 171 genus Leptospira 1 4549 6 13 Leptospira biflexa species 172 0 492 1 species Leptospira borgpetersenii 0 174 648 1 1 1557 species Leptospira interrogans 0 173 1 997 0 28183 Leptospira santarosai species 842 0 28452 species Leptospira alstonii 1 2 4 1 814 338321 0 Turneriella genus 1 810 Turneriella parva species 29510 0 name 0 0 1 92374 superkingdom 2157 0 289 38 1783276 0 clade 1 38 phylum 0 1801631 1 1 38 genus 2490204 0 Candidatus Micrarchaeota archaeon Mia14 species 1920749 0 38 1 234 2 1 84661 0 28890 Euryarchaeota phylum clade 2290931 0 53551 118 67 218 183963 0 class Halobacteria 1 27044 0 1644055 Haloferacales order 1 7843 18 84 8 21 1963271 0 family Halorubraceae 1 3388 0 1644057 genus Salinigranum 1 1319 2 1 1 1318 species Salinigranum rubrum 0 755307 658 1 genus Halopenitus 0 1209988 10 2 1 648 Halopenitus persicus species 1048396 0 38 3 1390 1 genus Halorubrum 56688 0 1 772 species Halorubrum trapanicum 29284 0 1 species Halorubrum lacusprofundi 0 2247 580 4 8 3604 1 Haloferacaceae family 0 1644056 2 3 0 60846 genus Halogeometricum 1 594 1 species Halogeometricum borinquense 0 60847 591 38 4 Haloferax genus 2251 0 2477 1 652 species Haloferax mediterranei 2252 0 1 1 Haloferax gibbonsii species 0 35746 891 species Haloferax volcanii 2246 0 896 1 genus 0 293431 529 1 293091 0 species Haloquadratum walsbyi 529 1 1 no rank 0 2678336 767 767 0 756883 halophilic archaeon DL31 species 1 125 21 Natrialbales order 0 1644060 8625 1 122 20 8500 1 family Natrialbaceae 0 1644061 2 3 1351 1 Natrinema genus 88723 0 Natrinema pellirubrum species 69525 0 604 1 1 no rank 2622230 0 745 0 406552 species Natrinema sp. J7-2 745 1 8 2 Halostagnicola genus 353799 0 711 1 703 0 353800 species Halostagnicola larsenii 1 382 0 2256 genus 1 1 44930 0 species Natronobacterium gregoryi 382 2 4 1 570 1269201 0 Salinarchaeum genus 566 2621923 0 no rank 1 1333523 0 species Salinarchaeum sp. Harcht-Bsk1 566 1 2 4 387342 0 Halopiger genus 1 1069 1 Halopiger xanaduensis species 0 387343 1065 2 1 1 690 29287 0 Natronococcus genus 689 Natronococcus occultus species 0 29288 1 1259 1 Halobiforma genus 0 203193 3 2 species Halobiforma lacisalsi 229731 0 1256 1 Natrialba genus 0 63742 689 1 2 2 species Natrialba magadii 0 13769 687 1 3 3 121871 0 genus Haloterrigena 1 1657 0 62320 Haloterrigena turkmenica species 1111 1 1 species Haloterrigena daqingensis 0 588898 543 27 189 1 10358 2235 0 order Halobacteriales 6184 1 family Haloarculaceae 0 1963268 105 16 1248 1 genus Halorhabdus 146825 0 24 3 1 784 146826 0 species Halorhabdus utahensis 1 440 species Halorhabdus tiamatea 0 430914 3 4 0 63743 genus Natronomonas 1 663 species Natronomonas pharaonis 0 2257 324 1 1 335 Natronomonas moolapensis species 416273 0 2 6 0 1073987 Halorientalis genus 1 884 1 0 2648975 no rank 878 1932360 0 Halorientalis sp. IM1011 species 878 1 0 203135 genus Halomicrobium 1 824 2 2 822 species Halomicrobium mukohataei 57705 0 1 1 2460 2237 0 Haloarcula genus 5 44 no rank 0 2624677 611 1 0 1592728 Haloarcula sp. CBA1115 species 611 1 1 species Haloarcula hispanica 0 51589 684 1 species Haloarcula taiwanensis 0 1932004 503 618 Haloarcula marismortui species 0 2238 1 family Halobacteriaceae 0 2236 3985 1 34 10 2 13 0 332246 genus Halalkalicoccus 1 533 413810 0 species Halalkalicoccus jeotgali 520 1 1 2652 0 2239 Halobacterium genus 4 41 1 688 1407499 0 species Halobacterium hubeiense 1 911 0 2242 species Halobacterium salinarum 1 no rank 2668073 0 1012 1 species Halobacterium sp. DL1 751944 0 1012 Halanaeroarchaeum genus 0 1656823 318 1 5 2 1 313 species Halanaeroarchaeum sulfurireducens 1604004 0 genus 1980514 0 448 1 1 0 1873524 Halodesulfurarchaeum formicicum species 448 Methanomicrobia class 224756 0 26507 1 32 51 4 21 1 1683 0 570264 Methanocellales order 3 570265 0 family 1662 1662 1 genus Methanocella 0 570266 4 3 Methanocella arvoryzae species 1175445 0 1143 1 species Methanocella conradii 1175444 0 515 1 17958 1 order Methanosarcinales 94695 0 6 28 family Methanosaetaceae 143067 0 1228 1 5 4 1 1223 0 2222 Methanothrix genus 3 1 1 617 0 301375 Methanosaeta harundinacea species 1 605 species Methanothrix soehngenii 0 2223 2206 0 Methanosarcinaceae family 1 16724 23 7 0 2225 genus 943 2 337 29291 0 Methanococcoides burtonii species 1 Methanococcoides methylutens species 2226 0 606 1 1 0 2220 genus 533 species Methanolobus psychrophilus 420950 0 533 1 64 13 genus Methanosarcina 0 2207 12085 1 1 Methanosarcina lacustris species 0 170861 663 2644672 0 no rank 3108 4 958 0 1434099 Methanosarcina sp. Kolksee species 1 Methanosarcina sp. WWM596 species 1434103 0 632 1 Methanosarcina sp. WH1 species 0 1434102 653 1 1 865 0 1434100 Methanosarcina sp. MTP4 species 1 Methanosarcina thermophila species 0 2210 538 species Methanosarcina siciliae 0 38027 1050 1 1 2208 0 Methanosarcina barkeri species 2245 0 418008 Methanosarcina horonobensis species 1176 1 1 1529 species Methanosarcina mazei 0 2209 2214 0 Methanosarcina acetivorans species 843 1 1 species Methanosarcina vacuolata 2215 0 869 886 genus 0 2175 2 488 Methanohalophilus halophilus species 0 2177 1 0 2176 species Methanohalophilus mahii 398 1 1 genus 0 196136 732 732 39669 0 species Methanosalsum zhilinae 1 1 948 2321 0 genus 1 948 species Methanohalobium evestigatum 2322 0 590 1 genus Methanomethylovorans 101191 0 1 2 1 species Methanomethylovorans hollandica 101192 0 589 1 6834 2191 0 order Methanomicrobiales 18 41 4 6 2233 1 Methanoregulaceae family 0 1198451 3 18 1 1456 0 395331 genus Methanoregula 1 Methanoregula boonei species 0 358766 560 1 species Methanoregula formicica 0 882104 878 2 11 0 475087 genus Methanosphaerula 1 773 762 Methanosphaerula palustris species 475088 0 1 2 0 196137 family 559 559 1 genus Methanospirillum 2202 0 2 2 2203 0 Methanospirillum hungatei species 557 1 1 3079 0 2194 family Methanomicrobiaceae 7 6 45989 0 Methanoculleus genus 1 2617 4 12 0 2198 Methanoculleus marisnigri species 985 1 884 species Methanoculleus bourgensis 83986 0 1 1 736 2619537 0 no rank 1 736 species Methanoculleus sp. MAB1 0 86622 2 2 230355 0 Methanolacinia genus 1 456 0 54120 Methanolacinia petrolearia species 454 1 2 922 88404 0 family 2 5 2192 0 genus Methanocorpusculum 1 922 Methanocorpusculum labreanum species 83984 0 917 1 5700 clade 2283796 0 20 0 1803510 clade 342 2 0 379546 genus 342 2 1 no rank 0 2633939 148 1 148 0 673860 Aciduliprofundum sp. MAR08-339 species 194 379547 0 Aciduliprofundum boonei species 1 16 18 class Thermoplasmata 0 183967 5358 1 2776 1 order Thermoplasmatales 0 2301 14 10 0 46659 family 188 2 2 2302 0 genus 188 1 2303 0 species Thermoplasma acidophilum 122 66 Thermoplasma volcanium species 50339 0 1 1 326 0 46630 family 0 46631 genus 326 1 82076 0 Picrophilus torridus species 326 1 1 0 1919231 no rank 1171 1171 species Thermoplasmatales archaeon BRNA1 0 1054217 1 3 3 1 316 1747776 0 Cuniculiplasmataceae family 9 2 genus Cuniculiplasma 1747777 0 313 1 Cuniculiplasma divulgatum species 0 1673428 304 1 2 family 0 90142 761 2 genus 74968 0 761 472 74969 0 species Ferroplasma acidiphilum 1 1 289 0 97393 species Ferroplasma acidarmanus 6 6 1685 1 order Methanomassiliicoccales 0 1235850 3 18 0 1577788 family Methanomassiliicoccaceae 1 984 655 0 1080709 genus 1 655 0 1406512 species Candidatus Methanomassiliicoccus intestinalis 1 1 1607807 0 genus 311 1 311 1577791 0 species Candidatus Methanoplasma termitum family 2517203 0 695 2 2 7 1 695 0 1291539 Candidatus Methanomethylophilus genus 688 Candidatus Methanomethylophilus alvus species 0 1291540 1 881 no rank 1234666 0 1 1 881 species methanogenic archaeon ISO4-H5 0 1495144 1 1712 183980 0 class Archaeoglobi 11 1 4 10 1711 1 order Archaeoglobales 2231 0 0 2232 family Archaeoglobaceae 1 1707 9 1 0 190818 genus 597 2 1 182 0 565033 species Geoglobus acetivorans 0 113653 species Geoglobus ahangari 415 1 1 214 0 54260 genus Ferroglobus 2 6 1 54261 0 Ferroglobus placidus species 208 895 0 2233 genus 4 1 84156 0 species Archaeoglobus profundus 175 216 0 58290 species Archaeoglobus veneficus 1 0 1316941 species Archaeoglobus sulfaticallidus 322 1 182 Archaeoglobus fulgidus species 0 2234 1 8 41 Thermococci class 183968 0 9922 1 2258 0 order Thermococcales 1 9914 40 13 0 2259 Thermococcaceae family 1 9901 39 28 8603 1 genus Thermococcus 0 2263 89 29 1 398 species Thermococcus celer 0 2264 355 Thermococcus piezophilus species 1712654 0 1 1 396 Thermococcus thioreducens species 277988 0 212 0 172049 species Thermococcus sibiricus 1 0 195522 species Thermococcus nautili 372 1 1 species Thermococcus gammatolerans 0 187878 195 Thermococcus pacificus species 0 71998 350 1 species Thermococcus paralvinellae 0 582419 312 1 1 Thermococcus eurythermalis species 1505907 0 356 1 293 0 342948 species Thermococcus onnurineus 1 species Thermococcus radiotolerans 187880 0 261 1 0 54077 species Thermococcus barossii 281 181 species Thermococcus profundus 0 49899 1 1 274 0 72803 Thermococcus siculi species 0 54262 Thermococcus chitonophagus species 222 1 1 53952 0 species Thermococcus peptonophilus 350 2265 0 species Thermococcus litoralis 312 1 species Thermococcus gorgonarius 71997 0 306 1 species Thermococcus kodakarensis 311400 0 305 1 309 0 55802 Thermococcus barophilus species 1 6 no rank 2627626 0 1925 1 454 species Thermococcus sp. AM4 246969 0 1 Thermococcus sp. 4557 species 0 1042877 382 1 2016361 0 Thermococcus sp. EXT12c species 400 1 279 0 122420 species Thermococcus sp. P6 1 276 Thermococcus sp. 5-4 species 0 2008440 species Thermococcus sp. 2319x1 1674923 0 134 1 288 Thermococcus cleftensis species 0 163003 1 261 0 110164 Thermococcus guaymasensis species 1 1 152 genus 83867 0 152 0 971279 species Palaeococcus pacificus 1 Pyrococcus genus 2260 0 1118 1 5 8 1 2261 0 Pyrococcus furiosus species 211 1 Pyrococcus abyssi species 29292 0 169 species Pyrococcus kukulkanii 1609559 0 88 1 268 0 1008460 Pyrococcus yayanosii species 1 53953 0 Pyrococcus horikoshii species 142 1 2 no rank 2629106 0 235 0 342949 species Pyrococcus sp. NA2 78 1 157 0 1183377 species Pyrococcus sp. ST04 1 43 13774 2283794 0 clade 183939 0 class Methanococci 1 5836 18 18 2 17 Methanococcales order 2182 0 5818 1 196117 0 family Methanocaldococcaceae 1 2404 9 1 1 2016 196118 0 Methanocaldococcus genus 7 3 1 434 no rank 2641196 0 434 0 644281 Methanocaldococcus sp. FS406-22 species 1 1 Methanocaldococcus infernus species 67760 0 124 1 242 73913 0 Methanocaldococcus vulcanius species 1 347 2190 0 species Methanocaldococcus jannaschii 1 398 83171 0 species Methanocaldococcus fervens 468 species Methanocaldococcus bathoardescens 0 1301915 1 0 196119 genus 387 1 387 Methanotorris igneus species 0 2189 1 7 family 2183 0 3412 2 5 2957 1 Methanococcus genus 0 2184 0 42879 Methanococcus aeolicus species 309 1 1 Methanococcus voltae species 0 2188 291 302 species Methanococcus vannielii 2187 0 1 1 2053 Methanococcus maripaludis species 0 39152 155862 0 genus Methanothermococcus 1 455 2 2 1 155863 0 Methanothermococcus okinawensis species 453 1 7938 183925 0 Methanobacteria class 25 1 order Methanobacteriales 0 2158 7937 1 6 24 22 2 2159 0 Methanobacteriaceae family 1 7732 610 1 genus Methanothermobacter 0 145260 7 5 1 218 species Methanothermobacter marburgensis 145263 0 1 145262 0 species Methanothermobacter thermautotrophicus 75 0 2631116 no rank 162 1 1 0 866790 species Methanothermobacter sp. CaT2 162 1 148 Methanothermobacter wolfeii species 0 145261 8 11 1 2786 0 2160 Methanobacterium genus Methanobacterium paludis species 0 868131 419 1 Methanobacterium subterraneum species 0 59277 368 1 1 400 species Methanobacterium lacus 0 877455 1 444 species Methanobacterium congolense 118062 0 1 479 species Methanobacterium formicicum 2162 0 665 no rank 0 2627676 2 0 1379702 Methanobacterium sp. MB1 species 269 1 Methanobacterium sp. MZ-A1 species 0 1911685 396 1 504 genus 0 2316 1 1 504 species Methanosphaera stadtmanae 2317 0 3830 1 Methanobrevibacter genus 0 2172 8 7 1 0 2173 species Methanobrevibacter smithii 892 1 747 0 83816 species Methanobrevibacter ruminantium no rank 0 2638681 951 2 Methanobrevibacter sp. AbM4 species 224719 0 356 1 595 1609968 0 species Methanobrevibacter sp. YE315 1 1 0 294671 Methanobrevibacter olleyae species 548 1 0 230361 species Methanobrevibacter millerae 684 199 0 2178 family 1 199 genus 0 2179 1 1 Methanothermus fervidus species 2180 0 199 7675 clade 0 1783275 54 phylum 0 651137 2006 11 1 761 1643678 0 class Nitrososphaeria 4 2 2 3 0 1033996 Nitrososphaerales order 1 623 1 1033997 0 family 620 0 497726 genus 620 1 620 0 1034015 species Nitrososphaera viennensis 1 136 1968909 0 order 1 1 1968910 0 family 136 1 genus 498374 0 136 136 2045011 0 species Candidatus Nitrosocaldus islandicus 1 651142 0 no rank 387 3 genus 1825023 0 281 2 1 1603555 0 Candidatus Nitrosotenuis cloacae species 105 176 Candidatus Nitrosotenuis sp. AQ6f species 0 1846278 1 1 genus 1593364 0 106 0 1410606 species Candidatus Nitrosopelagicus brevis 106 1 4 858 31932 0 order 4 1 338190 0 family Nitrosopumilaceae 1 858 276 0 1993653 genus 1 276 Candidatus Nitrosomarinus catalina species 1898749 0 1 338191 0 genus 581 2 1 293 species Candidatus Nitrosopumilus sediminis 0 1229909 1 288 species Candidatus Nitrosopumilus adriaticus 1580092 0 phylum 0 51967 118 1 1 118 498845 0 genus 1 Candidatus Korarchaeum cryptofilum species 498846 0 118 5551 28889 0 phylum 42 4 42 5551 1 Thermoprotei class 183924 0 9 2172 order 2281 0 family Sulfolobaceae 118883 0 2172 1 1 9 1 461 genus 69655 0 461 111955 0 Sulfolobus tokodaii species 1 961 genus 2284 0 3 1 species Sulfolobus acidocaldarius 2285 0 294 1 no rank 2641160 0 199 199 Sulfolobus sp. A20 species 1891280 0 1 468 43080 0 species Sulfolobus islandicus 1 213 0 12914 genus 1 1 0 563177 Acidianus hospitalis species 213 0 2100760 genus 309 1 2287 0 species Sulfolobus solfataricus 309 1 2 227 genus 41980 0 species Metallosphaera cuprina 0 1006005 140 1 87 43687 0 species Metallosphaera sedula 1 15 7 1 1582 0 2266 Thermoproteales order Thermoproteaceae family 2267 0 734 1 5 8 1 105 0 2276 genus 105 2277 0 species Pyrobaculum islandicum 1 2 genus 0 2270 400 1 242 2271 0 species Thermoproteus tenax 1 158 184117 0 Thermoproteus uzoniensis species 1 42 genus 0 76886 1 42 species Caldivirga maquilingensis 0 76887 1 182 164450 0 Vulcanisaeta genus 3 2 1 164451 0 Vulcanisaeta distributa species 56 1 124 985052 0 species Vulcanisaeta moutnovskia 6 1 114378 0 Thermofilaceae family 1 841 7 5 840 1 Thermofilum genus 2268 0 species Thermofilum carboxyditrophus 0 1483572 267 1 2269 0 species Thermofilum pendens 154 1 1 266 0 1365176 species Thermofilum adornatus 1 146 0 1550241 species Thermofilum uzonense 6 15 Desulfurococcales order 114380 0 1264 1 1 941 2272 0 family Desulfurococcaceae 10 2 0 2273 genus 344 2 1 0 94694 Desulfurococcus amylolyticus species 148 1 species Desulfurococcus mucosus 2275 0 196 0 477695 genus 53 1 53 species Thermogladius calderae 1200300 0 1 356 1 Staphylothermus genus 0 2279 4 3 species Staphylothermus marinus 2280 0 188 1 0 84599 species Staphylothermus hellenicus 164 1 2 101 genus 0 54258 1 27 0 54259 species Ignicoccus islandicus 74 160233 0 Ignicoccus hospitalis species 1 1 85 0 54253 genus 1 species Thermosphaera aggregans 0 54254 85 2307 0 Pyrodictiaceae family 1 317 4 4 84 0 54247 genus 1 84 Hyperthermus butylicus species 54248 0 1 134 genus 2308 0 1 species Pyrodictium delaneyi 1273541 0 134 1 1 0 54251 genus 95 1 95 0 54252 species Pyrolobus fumarii 529 0 871006 order 2 0 255472 family 369 1 369 0 200414 genus 1 200415 0 species Caldisphaera lagunensis 369 1 160 871007 0 family 1 1 160 0 105850 genus 1 0 242703 Acidilobus saccharovorans species 160