members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 31 8925 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 5933816 4711 0 292 36423 2157 superkingdom 1 0 9 phylum Euryarchaeota 28890 233 30610 183968 2 Thermococci class 2640 42 1 0 1 0 1 Thermococcales order 2258 41 2638 0 1 40 2637 2259 1 family Thermococcaceae 2260 1 genus Pyrococcus 515 8 1 0 Pyrococcus yayanosii species 1008460 29 1 0 0 203 2 2629106 no rank 89 1 Pyrococcus sp. NA2 species 342949 0 0 114 1 1183377 species Pyrococcus sp. ST04 29292 species Pyrococcus abyssi 58 1 0 0 1 59 53953 species Pyrococcus horikoshii 99 1 species Pyrococcus furiosus 2261 0 species Pyrococcus kukulkanii 1609559 1 66 0 29 2031 2263 19 Thermococcus genus 0 1 0 1 49 342948 Thermococcus onnurineus species 0 species Thermococcus barophilus 55802 1 167 0 195522 Thermococcus nautili species 42 1 187880 species Thermococcus radiotolerans 1 54 0 0 111 1 species Thermococcus litoralis 2265 0 22 1 277988 species Thermococcus thioreducens 0 45 1 Thermococcus profundus species 49899 1 127 172049 Thermococcus sibiricus species 0 species Thermococcus piezophilus 1712654 1 41 0 0 582419 species Thermococcus paralvinellae 1 172 1 22 163003 Thermococcus cleftensis species 0 454 1 72803 Thermococcus siculi species 0 1 39 2264 Thermococcus celer species 0 311400 species Thermococcus kodakarensis 45 1 0 36 1 Thermococcus barossii species 54077 0 0 53952 Thermococcus peptonophilus species 14 1 71997 Thermococcus gorgonarius species 1 27 0 0 50 1 1505907 Thermococcus eurythermalis species 0 46 1 71998 Thermococcus pacificus species 39 1 187878 Thermococcus gammatolerans species 0 6 292 2627626 no rank 0 0 26 1 122420 Thermococcus sp. P6 species 47 1 species Thermococcus sp. 4557 1042877 0 0 species Thermococcus sp. 2319x1 1674923 1 89 species Thermococcus sp. 5-4 2008440 34 1 0 0 56 1 Thermococcus sp. AM4 species 246969 40 1 species Thermococcus sp. EXT12c 2016361 0 0 110164 species Thermococcus guaymasensis 1 37 1 81 Thermococcus chitonophagus species 54262 0 90 2 1 Palaeococcus genus 83867 0 1 89 1 971279 Palaeococcus pacificus species 0 0 2290931 clade 15323 115 0 1 52 6294 224756 8 Methanomicrobia class 1 0 94695 16 order Methanosarcinales 5085 29 8 Methanosarcinaceae family 2206 25 4796 1 0 300 3 genus 1 Methanococcoides 2225 0 1 0 129 1 2226 Methanococcoides methylutens species 0 species Methanococcoides burtonii 29291 1 170 2 133 101191 2 genus Methanomethylovorans 0 1 0 101192 species Methanomethylovorans hollandica 1 131 genus 2321 1 297 0 0 297 1 2322 Methanohalobium evestigatum species 216 1 genus 196136 0 39669 species Methanosalsum zhilinae 216 1 0 0 genus 2220 88 1 0 species Methanolobus psychrophilus 420950 1 88 genus 1 Methanohalophilus 2175 3 331 1 0 0 1 153 2176 species Methanohalophilus mahii species Methanohalophilus halophilus 2177 177 1 0 2207 genus 10 Methanosarcina 13 3423 1 0 223 1 Methanosarcina horonobensis species 418008 0 1 422 2209 species Methanosarcina mazei 0 317 1 38027 Methanosarcina siciliae species 0 0 Methanosarcina thermophila species 2210 1 168 0 2644672 no rank 4 812 0 1 282 Methanosarcina sp. Kolksee species 1434099 1 222 Methanosarcina sp. MTP4 species 1434100 0 species Methanosarcina sp. WH1 1434102 1 155 0 153 1 1434103 species Methanosarcina sp. WWM596 0 0 1 192 2214 species Methanosarcina acetivorans 0 173 1 170861 Methanosarcina lacustris species 309 1 2215 species Methanosarcina vacuolata 0 Methanosarcina barkeri species 2208 1 797 0 0 3 273 143067 family 1 0 7 Methanothrix genus 2222 3 273 301375 Methanosaeta harundinacea species 133 1 0 0 2223 Methanothrix soehngenii species 1 133 570264 order 1 Methanocellales 254 4 1 0 3 253 570265 family 0 3 253 Methanocella 8 genus 570266 0 1 species Methanocella arvoryzae 1175445 162 1 0 0 species Methanocella conradii 1175444 1 83 0 1 947 18 2191 4 order Methanomicrobiales 1198451 5 family Methanoregulaceae 6 282 1 0 166 3 Methanoregula 3 genus 395331 0 1 0 Methanoregula boonei species 358766 91 1 0 species Methanoregula formicica 882104 72 1 1 0 1 Methanosphaerula genus 475087 111 2 110 1 475088 Methanosphaerula palustris species 0 54 2 family 88404 0 Methanocorpusculum 4 genus 2192 2 54 1 0 1 50 83984 species Methanocorpusculum labreanum 0 196137 family 2 148 0 2 148 6 genus Methanospirillum 2202 0 1 0 142 1 Methanospirillum hungatei species 2203 2194 4 Methanomicrobiaceae family 7 459 1 0 1 0 230355 genus 1 Methanolacinia 119 2 1 118 Methanolacinia petrolearia species 54120 0 1 0 45989 genus 4 Methanoculleus 336 4 1 117 83986 Methanoculleus bourgensis species 0 133 1 2198 species Methanoculleus marisnigri 0 0 2619537 no rank 82 1 Methanoculleus sp. MAB1 species 86622 82 1 0 1 0 class 26 Halobacteria 183963 63 9029 0 1 18 3349 1644060 order 27 Natrialbales 1 0 1644061 Natrialbaceae 16 family 3322 17 1084 2 3 Natrialba genus 63742 0 1 1081 1 species Natrialba magadii 13769 0 1 genus Natrinema 88723 3 329 1 0 0 Natrinema pellirubrum species 69525 177 1 no rank 2622230 151 1 0 0 151 1 406552 Natrinema sp. J7-2 species 0 1 170 genus 2256 Natronobacterium gregoryi species 44930 170 1 0 0 1 286 2 387342 1 genus Halopiger 285 1 387343 species Halopiger xanaduensis 0 1 151 genus 353799 0 151 1 353800 species Halostagnicola larsenii 0 0 1 2 183 1269201 1 genus Salinarchaeum 2621923 no rank 182 1 0 0 Salinarchaeum sp. Harcht-Bsk1 species 1333523 1 182 1 0 121871 Haloterrigena 3 genus 3 515 284 1 62320 Haloterrigena turkmenica species 0 1 228 588898 Haloterrigena daqingensis species 0 genus 203193 1 383 0 229731 species Halobiforma lacisalsi 383 1 0 0 genus 29287 1 205 0 1 205 Natronococcus occultus species 29288 18 3406 19 order Haloferacales 1644055 0 1 1963271 family 7 Halorubraceae 7 887 1 0 1 250 genus 1644057 0 0 755307 Salinigranum rubrum species 250 1 genus 2 Halorubrum 56688 3 457 1 0 0 Halorubrum lacusprofundi species 2247 1 217 0 29284 species Halorubrum trapanicum 1 238 173 2 1 genus Halopenitus 1209988 0 1 Halopenitus persicus species 1048396 172 1 0 159 1 2678336 no rank 0 0 756883 species halophilic archaeon DL31 159 1 2341 9 1644056 family 18 Haloferacaceae 0 1 2 1316 genus 6 Haloquadratum 293431 0 1 1310 1 293091 Haloquadratum walsbyi species 0 0 1 118 2 60846 3 genus Halogeometricum 0 115 1 species Halogeometricum borinquense 60847 4 889 4 genus Haloferax 2251 0 1 0 150 1 2252 Haloferax mediterranei species 1 387 Haloferax gibbonsii species 35746 0 Haloferax volcanii species 2246 1 348 0 5 Halobacteriales order 2235 26 2248 1 0 Haloarculaceae 5 family 1963268 1392 15 1 0 2237 5 genus Haloarcula 541 5 1 0 0 2238 Haloarcula marismortui species 130 1 51589 Haloarcula hispanica species 150 1 0 Haloarcula taiwanensis species 1932004 1 116 0 0 no rank 2624677 1 140 0 species Haloarcula sp. CBA1115 1592728 140 1 3 219 2 Halorhabdus genus 146825 0 1 Halorhabdus tiamatea species 430914 93 1 0 0 146826 Halorhabdus utahensis species 1 124 Halorientalis 6 genus 1073987 2 209 1 0 2648975 no rank 1 203 0 0 species Halorientalis sp. IM1011 1932360 1 203 0 154 1 genus 203135 57705 Halomicrobium mukohataei species 1 154 0 0 1 264 3 5 genus Natronomonas 63743 0 113 1 species Natronomonas pharaonis 2257 146 1 Natronomonas moolapensis species 416273 0 0 1 851 10 2236 1 Halobacteriaceae family 74 2 1656823 Halanaeroarchaeum 3 genus 0 1 1604004 species Halanaeroarchaeum sulfurireducens 71 1 0 2239 genus 11 Halobacterium 561 4 1 0 2242 species Halobacterium salinarum 137 1 0 0 no rank 2668073 174 1 1 174 751944 Halobacterium sp. DL1 species 0 239 1 1407499 species Halobacterium hubeiense 0 0 332246 genus 124 1 Halalkalicoccus jeotgali species 413810 124 1 0 0 1 91 2 Halodesulfurarchaeum 8 genus 1980514 0 Halodesulfurarchaeum formicicum species 1873524 83 1 0 20 2254 clade 2283796 183967 class 2012 17 0 1 0 1235850 2 Methanomassiliicoccales order 672 5 1 0 Methanomassiliicoccaceae 3 family 1577788 3 528 genus 1080709 369 1 0 1406512 species Candidatus Methanomassiliicoccus intestinalis 369 1 0 1 156 1607807 genus 0 0 species Candidatus Methanoplasma termitum 1577791 156 1 0 2517203 family 142 1 1 142 1291539 genus 0 142 1 1291540 species Candidatus Methanomethylophilus alvus 0 0 1234666 no rank 168 1 0 1 168 1495144 methanogenic archaeon ISO4-H5 species Thermoplasmatales 3 order 2301 1172 11 1 0 0 1747776 family 1 222 1747777 genus 1 222 0 species Cuniculiplasma divulgatum 1673428 1 222 0 0 family 90142 3 391 1 0 74968 8 Ferroplasma genus 3 391 0 188 1 74969 Ferroplasma acidiphilum species 195 1 Ferroplasma acidarmanus species 97393 0 0 184 2 family 46630 2 184 genus 4 Picrophilus 46631 0 1 0 Picrophilus torridus species 82076 180 1 0 3 222 46659 family 0 1 222 3 2302 genus 5 Thermoplasma 1 93 2303 Thermoplasma acidophilum species 0 0 1 124 50339 species Thermoplasma volcanium 1919231 no rank 150 1 0 1054217 species Thermoplasmatales archaeon BRNA1 150 1 0 1803510 clade 242 3 0 1 0 379546 7 genus Aciduliprofundum 3 242 species Aciduliprofundum boonei 379547 1 131 0 2633939 no rank 1 104 0 673860 species Aciduliprofundum sp. MAR08-339 104 1 0 class 183980 596 11 0 2 order Archaeoglobales 2231 11 596 1 0 0 1 594 10 1 Archaeoglobaceae family 2232 54260 genus 1 95 0 0 54261 species Ferroglobus placidus 95 1 1 0 genus 1 Geoglobus 190818 3 133 0 113653 Geoglobus ahangari species 69 1 0 1 63 Geoglobus acetivorans species 565033 5 365 4 Archaeoglobus genus 2233 0 1 0 84156 Archaeoglobus profundus species 78 1 1316941 species Archaeoglobus sulfaticallidus 1 132 0 1 72 2234 Archaeoglobus fulgidus species 0 0 79 1 58290 species Archaeoglobus veneficus 2283794 clade 9788 44 0 0 1 26 4707 class 3 Methanobacteria 183925 2158 1 Methanobacteriales order 4704 25 1 0 4388 22 2159 2 Methanobacteriaceae family 0 1 8 1315 2160 7 Methanobacterium genus 0 1 0 2162 Methanobacterium formicicum species 185 1 0 species Methanobacterium lacus 877455 1 256 1 261 species Methanobacterium paludis 868131 0 0 192 1 Methanobacterium congolense species 118062 2627676 no rank 2 266 0 0 1 144 1911685 Methanobacterium sp. MZ-A1 species 0 1379702 Methanobacterium sp. MB1 species 1 122 148 1 species Methanobacterium subterraneum 59277 0 0 genus 2316 1 480 0 2317 species Methanosphaera stadtmanae 1 480 1 0 145260 3 genus Methanothermobacter 5 240 0 Methanothermobacter wolfeii species 145261 56 1 0 1 67 2631116 no rank 0 67 1 866790 species Methanothermobacter sp. CaT2 1 42 species Methanothermobacter thermautotrophicus 145262 0 0 72 1 145263 species Methanothermobacter marburgensis 1 0 3 genus Methanobrevibacter 2172 7 2351 0 1 536 294671 species Methanobrevibacter olleyae 2 644 2638681 no rank 0 0 372 1 224719 Methanobrevibacter sp. AbM4 species 1609968 species Methanobrevibacter sp. YE315 1 272 0 500 1 species Methanobrevibacter millerae 230361 0 0 83816 Methanobrevibacter ruminantium species 237 1 1 431 Methanobrevibacter smithii species 2173 0 0 2178 family 2 315 1 0 genus 2 Methanothermus 2179 315 2 0 2180 species Methanothermus fervidus 1 313 1 0 183939 class 2 Methanococci 5081 18 0 1 17 5079 5 Methanococcales order 2182 0 1 7 2800 7 family Methanococcaceae 2183 0 1 271 genus 155862 271 1 Methanothermococcus okinawensis species 155863 0 2184 genus 5 Methanococcus 5 2522 1 0 343 1 42879 species Methanococcus aeolicus 0 0 2187 species Methanococcus vannielii 362 1 0 39152 Methanococcus maripaludis species 1 1391 0 2188 species Methanococcus voltae 1 421 0 1 2274 9 196117 3 family Methanocaldococcaceae 16 genus Methanocaldococcus 196118 1935 7 1 0 no rank 2641196 1 320 0 320 1 644281 Methanocaldococcus sp. FS406-22 species 0 species Methanocaldococcus bathoardescens 1301915 366 1 0 0 337 1 83171 Methanocaldococcus fervens species 1 202 67760 Methanocaldococcus infernus species 0 0 2190 Methanocaldococcus jannaschii species 1 359 species Methanocaldococcus vulcanius 73913 335 1 0 0 196119 genus 1 336 species Methanotorris igneus 2189 336 1 0 1 46 1783276 clade 0 46 1 phylum 1801631 0 2490204 genus 46 1 0 0 1920749 Candidatus Micrarchaeota archaeon Mia14 species 1 46 0 1783275 clade 5767 58 0 651137 phylum 2775 14 0 1 4 885 2 Nitrososphaeria class 1643678 order 1968909 1 488 0 0 1968910 family 1 488 genus 498374 488 1 0 488 1 2045011 Candidatus Nitrosocaldus islandicus species 0 0 1 395 2 Nitrososphaerales 1 order 1033996 394 1 1033997 family 0 497726 genus 394 1 0 1 394 1034015 Nitrososphaera viennensis species 0 0 order 31932 1314 5 0 338190 family 1314 5 778 3 338191 6 Nitrosopumilus genus 0 1 0 1 358 species Candidatus Nitrosopumilus sediminis 1229909 0 Candidatus Nitrosopumilus adriaticus species 1580092 1 414 1 0 Candidatus Nitrosomarinus 4 genus 1993653 536 2 532 1 1898749 Candidatus Nitrosomarinus catalina species 0 0 5 576 651142 no rank 1593364 4 genus Candidatus Nitrosopelagicus 381 2 1 0 0 377 1 Candidatus Nitrosopelagicus brevis species 1410606 0 1 195 3 genus 1 Candidatus Nitrosotenuis 1825023 0 species Candidatus Nitrosotenuis cloacae 1603555 101 1 Candidatus Nitrosotenuis sp. AQ6f species 1846278 1 93 0 0 phylum 51967 1 43 genus 498845 1 43 0 43 1 498846 Candidatus Korarchaeum cryptofilum species 0 2949 43 phylum 28889 0 43 2949 class 1 Thermoprotei 183924 0 1 0 order 2281 1577 10 1 0 118883 10 family Sulfolobaceae 1577 10 0 1 204 genus 2100760 species Sulfolobus solfataricus 2287 204 1 0 69655 genus 291 1 0 Sulfolobus tokodaii species 111955 1 291 0 0 41980 genus 2 167 0 1 60 species Metallosphaera sedula 43687 1006005 species Metallosphaera cuprina 1 107 0 genus 12914 192 1 0 0 192 1 563177 Acidianus hospitalis species 2284 4 genus Sulfolobus 4 713 1 0 2641160 no rank 1 180 0 0 1891280 species Sulfolobus sp. A20 180 1 43080 Sulfolobus islandicus species 386 1 0 2285 species Sulfolobus acidocaldarius 143 1 0 12 463 order 2266 0 7 301 2 Thermoproteaceae family 2267 0 1 0 genus 164450 2 120 50 1 species Vulcanisaeta distributa 164451 0 0 1 70 species Vulcanisaeta moutnovskia 985052 genus 2270 2 68 0 1 45 species Thermoproteus uzoniensis 184117 0 0 2271 Thermoproteus tenax species 23 1 1 62 genus 76886 0 0 Caldivirga maquilingensis species 76887 62 1 0 2276 genus 1 49 0 1 49 Pyrobaculum islandicum species 2277 5 162 114378 family 0 1 0 2268 10 Thermofilum genus 5 162 Thermofilum carboxyditrophus species 1483572 1 42 0 1 41 1550241 species Thermofilum uzonense 0 1365176 Thermofilum adornatus species 1 48 0 2269 Thermofilum pendens species 21 1 0 0 1 601 17 3 Desulfurococcales order 114380 1 0 2307 Pyrodictiaceae 11 family 4 116 0 1 26 54251 genus 26 1 54252 Pyrolobus fumarii species 0 0 genus 2308 1 30 0 1273541 Pyrodictium delaneyi species 1 30 genus 54247 49 1 0 0 49 1 54248 Hyperthermus butylicus species 12 482 family 3 Desulfurococcaceae 2272 0 1 280 3 2279 10 genus Staphylothermus 0 1 0 Staphylothermus hellenicus species 84599 1 101 0 Staphylothermus marinus species 2280 169 1 54258 genus 2 57 0 0 species Ignicoccus hospitalis 160233 1 25 54259 species Ignicoccus islandicus 32 1 0 0 1 41 2 11 Thermogladius genus 477695 0 1 30 1200300 Thermogladius calderae species 0 26 1 genus 54253 0 26 1 54254 Thermosphaera aggregans species genus 1 Desulfurococcus 2273 3 75 1 0 0 17 1 2275 Desulfurococcus mucosus species 57 1 Desulfurococcus amylolyticus species 94694 0 307 3 871006 order 0 family 255472 1 270 0 0 1 270 200414 genus 0 200415 Caldisphaera lagunensis species 270 1 2 37 871007 family 0 1 0 105850 1 genus Acidilobus 37 2 species Acidilobus saccharovorans 242703 1 36 0 1 0 2 29 superkingdom Bacteria 4387 5888468 clade 2498710 345 5 0 0 phylum 67814 345 5 1 0 class 1 Caldisericia 693071 345 5 0 1 4 344 693072 3 order Caldisericales 1 Caldisericaceae family 693073 341 3 1 0 340 2 693074 1 Caldisericum genus 0 1 0 Caldisericum exile species 693075 339 1 10076 42 200918 phylum 0 0 1 42 10076 188708 Thermotogae 17 class 7 3406 1643947 10 order Petrotogales 0 1 3396 6 1643949 family 0 0 483 1 28236 genus 0 483 1 species Petrotoga mobilis 69499 2066 3 31 Marinitoga genus 160798 0 1 149715 Marinitoga piezophila species 1062 1 0 0 1 973 2640159 no rank 1 973 1545835 species Marinitoga sp. 1137 0 genus 2 Defluviitoga 1511648 847 2 1 0 0 845 1 1006576 Defluviitoga tunisiensis species 1 0 order 16 Thermotogales 2419 5976 28 0 1 10 3854 5 family Fervidobacteriaceae 1643950 0 1 4 1072 2422 2 genus Fervidobacterium 0 1 435 93466 species Fervidobacterium pennivorans 0 1 454 Fervidobacterium nodosum species 2424 0 181 1 species Fervidobacterium islandicum 2423 1 0 2420 15 genus Thermosipho 2777 5 0 2676525 no rank 2 1269 0 1 637 Thermosipho sp. 1070 species 1437364 0 632 1 1462747 species Thermosipho sp. 1063 0 Thermosipho melanesiensis species 46541 1 694 2421 species Thermosipho africanus 1 799 0 4 Thermotogaceae family 188709 2106 17 1 0 1 0 37 genus Thermotoga 2335 11 1037 61 1 species Thermotoga petrophila 93929 0 1 65 Thermotoga caldifontis species 1508419 0 93930 species Thermotoga naphthophila 1 76 0 Thermotoga profunda species 1508420 341 1 0 0 species Thermotoga neapolitana 2337 1 87 0 4 262 2631113 no rank 0 80 1 species Thermotoga sp. RQ7 126738 0 species Thermotoga sp. 2812B 1157948 1 71 1157947 species Thermotoga sp. Cell2 57 1 0 Thermotoga sp. RQ2 species 126740 1 54 0 2336 Thermotoga maritima species 1 108 0 12 Pseudothermotoga genus 1643951 5 1065 1 0 Pseudothermotoga elfii species 38322 367 1 0 119394 species Pseudothermotoga thermarum 258 1 0 0 177758 Pseudothermotoga lettingae species 369 1 57487 species Pseudothermotoga hypogea 1 59 0 1643946 Kosmotogales 7 order 6 677 1 0 670 5 1643948 Kosmotogaceae 3 family 0 1 1 181 1184396 genus 0 species Mesotoga prima 1184387 181 1 0 1 Kosmotoga genus 651456 3 486 1 0 0 1330330 Kosmotoga pacifica species 292 1 0 651457 Kosmotoga olearia species 193 1 phylum 200940 2257 9 0 67799 6 Thermodesulfobacteria class 2257 9 1 0 11 order Thermodesulfobacteriales 188710 2251 8 1 0 188711 Thermodesulfobacteriaceae 8 family 2240 7 1 0 342 2 444090 2 Caldimicrobium genus 0 1 340 1 species Caldimicrobium thiodismutans 1653476 0 300 1 genus 241192 0 0 300 1 Thermodesulfatator indicus species 171695 1 Thermodesulfobacterium genus 1740 1590 3 1 0 0 401 1 species Thermodesulfobacterium commune 1741 0 1295609 Thermodesulfobacterium geofontis species 1188 1 1 208 phylum 2138240 0 0 class 2138243 1 208 order 2138246 208 1 0 1 208 2138247 family 0 1 208 68335 genus 0 35786 species Coprothermobacter proteolyticus 208 1 0 25760 25 32066 phylum 0 0 1 25 25760 203490 33 class Fusobacteriia 0 1 24 25727 46 order Fusobacteriales 203491 0 1 11 19547 Fusobacteriaceae 25 family 203492 0 genus 167639 718 1 1 718 167642 species Ilyobacter polytropus 0 84 genus Fusobacterium 848 9 18804 1 0 662 1 Fusobacterium gonidiaformans species 849 0 species Fusobacterium mortiferum 850 1 1204 0 1228 1 Fusobacterium ulcerans species 861 0 856 species Fusobacterium varium 1 2258 0 species Fusobacterium periodonticum 860 1 3818 0 0 2115 1 species Fusobacterium hwasookii 1583098 1 7024 851 species Fusobacterium nucleatum 0 species Fusobacterium necrophorum 859 411 1 0 6134 12 Leptotrichiaceae 9 family 1129771 0 1 0 1 759 2 1 genus Sneathia 168808 0 1 758 187101 species Sneathia amnii 1 0 Sebaldella 2 genus 32068 768 2 1 766 826 species Sebaldella termitidis 0 1 0 2 genus Streptobacillus 34104 2 1020 0 Streptobacillus moniliformis species 34105 1 1018 3578 5 32067 25 Leptotrichia genus 0 1 0 2633022 no rank 3 2612 0 1 760 712357 species Leptotrichia sp. oral taxon 212 0 932 1 712368 Leptotrichia sp. oral taxon 498 species 0 1 920 Leptotrichia sp. oral taxon 847 species 1785996 0 941 1 Leptotrichia buccalis species 40542 704 10 phylum 508458 0 0 1 10 704 649775 7 class Synergistia order 3 Synergistales 649776 697 9 1 0 3 Synergistaceae family 649777 8 694 1 0 168 2 81466 Aminobacterium 4 genus 0 1 0 Aminobacterium colombiense species 81468 164 1 81 1 genus 81461 0 0 1 81 Thermanaerovibrio acidaminovorans species 81462 0 genus 336260 1 163 336261 Thermovirga lienii species 1 163 0 genus 49894 134 1 0 0 134 1 97477 Acetomicrobium mobile species 145 2 2 genus Cloacibacillus 508459 0 1 0 1 143 species Cloacibacillus porcorum 1197717 0 phylum 40117 2285 14 0 1 14 2285 class 26 Nitrospira 203693 13 2259 Nitrospirales 14 order 189778 0 1 1 0 189779 13 Nitrospiraceae family 2245 12 1 0 28261 3 Thermodesulfovibrio genus 2 1122 1119 1 species Thermodesulfovibrio yellowstonii 28262 0 0 1 674 5 1234 11 Nitrospira genus 0 species Nitrospira japonica 1325564 143 1 1715989 Candidatus Nitrospira inopinata species 114 1 0 0 species Nitrospira defluvii 330214 154 1 1 252 42253 Nitrospira moscoviensis species 0 4 436 179 2 genus Leptospirillum 0 1 species group 261386 128 1 0 Leptospirillum ferriphilum species 178606 128 1 0 261385 species group 1 127 0 0 species Leptospirillum sp. Group II 'CF-1' 1660083 1 127 179 1 655606 species group 0 0 Leptospirillum ferrooxidans species 180 179 1 172162 372 clade 1783270 0 phylum 142182 8 1357 0 219685 1 class Gemmatimonadetes 1357 8 1 0 1 0 219686 11 Gemmatimonadales order 1356 7 0 1 6 1345 219687 11 Gemmatimonadaceae family 2 803 5 Gemmatirosa genus 1706036 0 1 species Gemmatirosa kalamazoonesis 861299 1 798 0 173479 genus 7 Gemmatimonas 3 531 1 0 1 263 173480 Gemmatimonas aurantiaca species 0 261 1 1379270 species Gemmatimonas phototrophica 0 0 170135 360 68336 clade 0 1134404 phylum 1709 7 5 class Ignavibacteria 795747 7 1709 1 0 1704 6 795748 order 12 Ignavibacteriales 0 1 295 2 1334117 family 0 295 2 1 genus Melioribacter 1134403 0 1 1 294 Melioribacter roseus species 1134405 0 1 0 2 family Ignavibacteriaceae 795749 1397 3 1 0 795750 3 Ignavibacterium genus 2 1395 591197 Ignavibacterium album species 1 1392 0 0 2884 21 1090 phylum 1 0 class 5 Chlorobia 191410 21 2884 191411 25 order Chlorobiales 2879 20 1 0 19 2854 191412 Chlorobiaceae 21 family 0 1 0 no rank 274493 8 1401 0 1 3 303 1 genus Pelodictyon 1099 1100 species Pelodictyon luteolum 93 1 0 209 1 species Pelodictyon phaeoclathratiforme 34090 0 0 1 1098 5 26 genus Chlorobium 1091 1092 Chlorobium limicola species 1 195 0 1 288 337090 species Chlorobium chlorochromatii 0 0 1 130 species Chlorobium phaeovibrioides 1094 1096 Chlorobium phaeobacteroides species 1 459 0 0 265 1 genus 100715 species Chloroherpeton thalassium 100716 265 1 0 0 1 523 4 256319 Chlorobaculum 41 genus 0 species Chlorobaculum limnaeum 274537 1 188 0 274539 Chlorobaculum parvum species 147 1 0 Chlorobaculum tepidum species 1097 147 1 0 1 644 5 1101 Prosthecochloris 38 genus 0 no rank 2632826 443 3 0 133 1 Prosthecochloris sp. HL-130-GSB species 1974213 281093 species Prosthecochloris sp. GSB1 156 1 0 0 154 1 1868325 species Prosthecochloris sp. CIB 2401 0 163 1 1102 Prosthecochloris aestuarii species 332 165542 Bacteroidetes 36 phylum 976 0 1 1 0 54 Flavobacteriia class 117743 119405 146 200644 101 Flavobacteriales order 119351 145 1 0 417 Flavobacteriaceae family 49546 102 96516 1 0 1 0 326319 28 Dokdonia genus 4 3367 0 2 2207 2615033 no rank 0 1 987 983548 Dokdonia sp. 4H-3-7-5 species 0 313590 species Dokdonia sp. MED134 1220 1 326320 Dokdonia donghaensis species 1 1132 0 0 1 1558 genus 336276 0 no rank 2615019 1 1558 1 1558 2058135 Olleya sp. Bg11-27 species 0 417127 genus 1110 1 0 1110 1 species Zunongwangia profunda 398743 0 0 1855 1 261827 genus 1855 1 1736674 species Algibacter alginicilyticus 0 0 1850 2 no rank 61432 0 531844 Flavobacteriaceae bacterium 3519-10 species 316 1 0 Flavobacteriaceae bacterium UJ101 species 1150389 1534 1 0 1 2 1151 genus 1 Tamlana 393005 0 2069432 Tamlana sp. UJ94 species 1150 1 1370 3 111500 6 Muricauda genus 0 1 0 644 1 Muricauda lutaonensis species 516051 0 720 1 Muricauda ruestringensis species 111501 1 0 23 Gramella genus 292691 2941 5 1486245 Gramella flava species 494 1 0 0 species Gramella sp. LPB0144 1913577 1 810 1 940 411153 species Gramella forsetii 0 species Gramella sp. SH35 2126553 674 1 0 0 1176327 genus 1 499 no rank 2636237 499 1 0 1 499 species Aureitalea sp. RR4-38 2094025 0 0 112040 genus 1 446 species Zobellia galactanivorans 63186 446 1 0 284 1 252306 genus 0 252307 Robiginitalea biformata species 284 1 0 3122 3 286104 8 Winogradskyella genus 0 1 0 3114 2 no rank 2615021 0 1814 1 754409 Winogradskyella sp. PG-2 species 0 1936080 species Winogradskyella sp. J14-2 1300 1 1 0 27 Cellulophaga genus 104264 4 5220 0 1 1849 species Cellulophaga lytica 979 species Cellulophaga baltica 76594 1 1709 0 0 1 1635 59600 species Cellulophaga algicola 0 1 1369 1204360 genus 0 1 1369 species Siansivirga zeaxanthinifaciens 762954 1 0 4 genus Formosa 225842 2175 3 2 2171 2644710 no rank 0 0 946 1 species Formosa sp. Hel1_33_131 1336794 Formosa sp. Hel3_A1_48 species 1336795 1225 1 0 116 genus Nonlabens 363408 4187 5 1 0 2615035 no rank 1974 2 0 1 903 species Nonlabens sp. MB-3u-79 2058134 0 1476901 Nonlabens sp. MIC269 species 1 1071 0 1 1011 328515 Nonlabens dokdonensis species 0 0 species Nonlabens sediminis 319236 1 1086 0 1068 1 genus 143222 0 1068 1 2633436 no rank 1729720 species Salegentibacter sp. T436 1 1068 0 0 1 1379 216431 genus species Croceibacter atlanticus 313588 1379 1 0 0 1 800 178469 genus species Arenibacter algicola 616991 800 1 0 1119 1 genus 83612 0 1119 1 57029 Psychroflexus torquis species 0 Tenacibaculum 18 genus 104267 7482 5 1 0 0 Tenacibaculum dicentrarchi species 669041 1 1443 0 2122 1 1850252 Tenacibaculum todarodis species Tenacibaculum maritimum species 107401 1 1540 0 0 2359 1 Tenacibaculum jejuense species 584609 10750 6 52959 54 genus Polaribacter 0 1 2465 1 species Polaribacter vadi 1774273 0 0 5690 3 no rank 196858 0 species Polaribacter sp. BM10 1529069 1 1975 0 1 2104 species Polaribacter sp. MED152 313598 0 1611 1 2058137 species Polaribacter sp. ALD11 Polaribacter reichenbachii species 996801 1 2541 0 2700084 genus 2436 1 0 1850246 Lutibacter sp. LPB0138 species 1 2436 0 1 0 291183 genus 34 Lacinutrix 5341 4 0 no rank 2647285 3605 2 0 Lacinutrix sp. 5H-3-7-4 species 983544 1 1902 species Lacinutrix sp. Bg11-31 2057808 1 1703 0 1486034 Lacinutrix venerupis species 1 1702 0 0 1 2114 2 358023 Lutibacter 5 genus 0 1 2109 1622118 species Lutibacter profundi genus 389486 1 663 0 0 2648869 no rank 1 663 0 1 663 1453352 species Sediminicola sp. YIK13 genus 1518147 1585 1 0 1790137 species Wenyingzhuangia fucanilytica 1 1585 0 31 genus Flavobacterium 237 9 11392 1 0 0 996 species Flavobacterium columnare 2229 1 1 991 Flavobacterium commune species 1306519 0 0 species Flavobacterium psychrophilum 96345 1175 1 0 55197 Flavobacterium branchiophilum species 1 1077 0 1 2705 986 species Flavobacterium johnsoniae 1492737 species Flavobacterium gilvum 1075 1 0 0 Flavobacterium indicum species 312277 1488 1 0 1763534 species Flavobacterium crassostreae 621 1 1 0 76831 81 genus Myroides 2827 5 0 1 720 Myroides profundi species 480520 0 76832 species Myroides odoratimimus 702 1 1324 2 no rank 2642485 0 0 Myroides sp. ZB35 species 1458492 1 649 0 675 1 Myroides sp. A21 species 1583100 1 843 genus 153265 0 Aequorivita sublithincola species 101385 1 843 0 15 6235 1016 54 Capnocytophaga genus 0 1 1017 species Capnocytophaga gingivalis 313 1 0 1 491 1848904 Capnocytophaga stomatis species 0 1 281 Capnocytophaga ochracea species 1018 0 0 628 1 28189 Capnocytophaga cynodegmi species 0 45243 Capnocytophaga haemolytica species 209 1 0 695 1 1019 Capnocytophaga sputigena species 6 2467 2640652 no rank 0 Capnocytophaga sp. H2931 species 1945657 532 1 0 0 1705617 Capnocytophaga sp. oral taxon 323 species 1 301 1316593 species Capnocytophaga sp. oral taxon 864 1 308 0 1945658 Capnocytophaga sp. H4358 species 1 518 0 0 Capnocytophaga sp. ChDC OS43 species 209053 381 1 0 427 1 1316596 species Capnocytophaga sp. oral taxon 878 1 797 species Capnocytophaga canimorsus 28188 0 300 1 species Capnocytophaga leadbetteri 327575 0 1 0 1 Flavivirga genus 1209327 1434 2 1433 1 species Flavivirga eckloniae 1803846 0 0 1 4390 5 252356 38 genus Maribacter 0 2615042 no rank 3 3671 1836467 species Maribacter sp. T28 1 1254 0 0 1107 1 313603 species Maribacter sp. HTCC2170 1 1310 species Maribacter sp. 1_2014MBL_MicDiv 1644130 0 0 species Maribacter cobaltidurans 1178778 1 681 0 1 2 1737 1 Seonamhaeicola genus 1649495 1736 1 no rank 2622645 0 1 1736 Seonamhaeicola sp. S2-3 species 1936081 0 0 1 5059 10 6 family Blattabacteriaceae 39782 9 5053 34098 40 Blattabacterium genus 0 1 0 1 699 1653831 species Blattabacterium cuenoti 0 2647581 no rank 6 3719 0 39768 species Blattabacterium sp. (Mastotermes darwiniensis) 1 523 1 575 Blattabacterium sp. (Blatta orientalis) species 367806 0 1 741 1186051 species Blattabacterium sp. (Blaberus giganteus) 0 0 1 567 Blattabacterium sp. (Periplaneta americana) species 367488 0 species Blattabacterium sp. (Nauphoeta cinerea) 1316444 1 668 0 645 1 624186 species Blattabacterium sp. (Blattella germanica) 164514 species Blattabacterium punctulatus 595 1 0 668 2 1333713 family 0 267986 15 genus Owenweeksia 2 668 1 0 0 Owenweeksia hongkongensis species 253245 653 1 13922 20 2762318 family 0 653 2 1013 1 genus Weeksella 0 1 652 1 species Weeksella virosa 1014 0 genus 34084 1 1201 0 Riemerella anatipestifer species 34085 1 1201 0 0 2782232 no rank 10 6908 0 1 6546 9 Chryseobacterium 45 genus 59732 1 305 Chryseobacterium camelliae species 1265445 0 558152 Chryseobacterium piperi species 1 872 0 1324352 Chryseobacterium gallinarum species 1 604 0 species Chryseobacterium glaciei 1685010 1176 1 0 1268 1 Chryseobacterium indologenes species 253 0 0 no rank 2593645 3 2276 888 1 2015076 Chryseobacterium sp. T16E-39 species 0 0 1 761 Chryseobacterium sp. StRB126 species 878220 0 1 627 species Chryseobacterium sp. IHB B 17019 1721091 362 1 genus 2782228 0 1 362 species Chryseobacterium taklimakanense 536441 0 4668 6 308865 Elizabethkingia 48 genus 0 1 species Elizabethkingia anophelis 1117645 1684 1 0 0 634 1 238 Elizabethkingia meningoseptica species 172045 Elizabethkingia miricola species 976 1 0 0 1756150 species Elizabethkingia genomosp. 4 638 1 1756149 Elizabethkingia genomosp. 3 species 1 688 0 0 genus 28250 1 492 492 1 28251 Ornithobacterium rhinotracheale species 0 778 3 1755828 family 2 Ichthyobacteriaceae 0 1 2 776 23 genus Ichthyobacterium 1755829 0 1 0 Ichthyobacterium seriolicida species 242600 1 753 4 1 Cryomorphaceae family 246874 0 0 3 1406 no rank 313602 1147 2 2 Candidatus Sulcia genus 336809 0 1 336810 Candidatus Sulcia muelleri species 1145 1 0 0 1940138 genus 1 259 Candidatus Walczuchella monophlebidarum species 1415657 1 259 0 897 3 Crocinitomicaceae 1 family 1853230 0 1 2 Fluviicola genus 332102 896 2 1 0 0 species Fluviicola taffensis 191579 894 1 1100069 order 19 Bacteroidetes Order II. Incertae sedis 1298 7 1 0 1279 6 Rhodothermaceae 9 family 563843 0 1 no rank 1196022 1 487 0 487 1 1779382 Rhodothermaceae bacterium RA species 0 1 0 29548 6 Rhodothermus genus 459 2 0 1 453 species Rhodothermus marinus 29549 0 1 324 2 Salinibacter 2 genus 146918 322 1 146919 species Salinibacter ruber 0 18143 61 768503 class 18 Cytophagia 0 1 768507 74 Cytophagales order 18125 60 1 0 3841 17 10 family Cytophagaceae 89373 0 1 319458 genus 6 Leadbetterella 2 485 1 0 0 species Leadbetterella byssophila 316068 479 1 107 17 genus Spirosoma 6 1299 1 0 species Spirosoma radiotolerans 1379870 1 247 0 564064 Spirosoma rigui species 1 230 0 294 1 2057025 Spirosoma sp. HA7 species 0 0 species Spirosoma aerolatum 1211326 280 1 1178516 Spirosoma montaniterrae species 231 1 0 1 0 1 genus Fibrella 861914 224 2 0 no rank 2620963 1 223 1834519 species Fibrella sp. ES10-3-2-2 1 223 0 659 2 14 genus Cytophaga 978 0 1 0 1 645 985 Cytophaga hutchinsonii species 0 1 2 330 1 genus Dyadobacter 120831 94254 species Dyadobacter fermentans 329 1 0 0 1 834 2 genus 2 Runella 105 106 species Runella slithyformis 832 1 0 0 2 1230 family 2762301 0 1 1230 2 869806 7 genus Marivirga 1006 Marivirga tractuosa species 1 1223 0 1 0 1 family Persicobacteraceae 1853234 636 3 genus 4 Persicobacter 59740 635 2 1 0 0 2664020 no rank 1 631 0 631 1 1085624 Persicobacter sp. JZB09 species 1 0 2 family Amoebophilaceae 1501348 4 599 273135 genus 1 210 0 no rank 2641185 210 1 0 0 249402 Cardinium endosymbiont of Encarsia pergandiella species 210 1 1 0 281119 3 genus Candidatus Amoebophilus 387 2 0 1 384 281120 Candidatus Amoebophilus asiaticus species 563798 Cyclobacteriaceae 10 family 10 3618 1 0 3 1649 68288 10 Cyclobacterium genus 0 1 777 1 104 species Cyclobacterium marinum 0 862 1 species Cyclobacterium amurskyense 320787 0 232244 4 genus Belliella 2 971 1 0 0 1 967 Belliella baltica species 232259 629 2 246875 2 Algoriphagus genus 0 1 0 1727163 species Algoriphagus sp. M8-2 1 627 2 359 390846 9 Echinicola genus 0 1 0 390884 species Echinicola vietnamensis 1 350 16 3500 family 7 Hymenobacteraceae 1853232 0 1 0 1 845 4 Rufibacter 5 genus 1379908 512763 species Rufibacter tibetensis 341 1 0 499 2 no rank 2639626 0 245 1 1379910 species Rufibacter sp. DG31D 0 1 254 species Rufibacter sp. DG15C 1379909 0 1 0 Hymenobacter 15 genus 89966 8 2097 0 1446467 Hymenobacter swuensis species 312 1 0 no rank 2615202 5 1475 Hymenobacter sp. PAMC 26628 species 1484118 1 370 0 0 1484116 Hymenobacter sp. PAMC 26554 species 421 1 1 168 1385663 species Hymenobacter sp. DG25A 0 177 1 Hymenobacter sp. DG25B species 1385664 0 Hymenobacter sp. APR13 species 1356852 339 1 0 0 1411621 species Hymenobacter sedentarius 1 295 1 0 Pontibacter 2 genus 323449 551 3 0 262 1 400092 Pontibacter korlensis species 0 388950 species Pontibacter akesuensis 287 1 1 0 1937968 Bernardetiaceae 2 family 1590 3 1 0 11 Bernardetia genus 1937972 2 1588 0 999 species Bernardetia litoralis 1 1577 200667 Flammeovirgaceae 12 family 4 3037 1 0 1 0 2 Flammeovirga genus 59739 2 1370 0 2637820 no rank 1 1368 1 1368 1191459 Flammeovirga sp. MY04 species 0 340671 no rank 1655 1 0 1257021 Flammeovirgaceae bacterium 311 species 1655 1 0 1 0 117747 6 Sphingobacteriia class 10397 24 1 0 13 Sphingobacteriales order 200666 10391 23 84566 34 Sphingobacteriaceae family 10378 22 1 0 0 1 4 1390 8 Mucilaginibacter genus 423349 2617802 no rank 1 324 0 Mucilaginibacter sp. PAMC 26640 species 1300914 324 1 0 1 534 Mucilaginibacter sp. BJC16-A31 species 1234841 0 524 1 1550579 species Mucilaginibacter gotjawali 0 0 1 2724 6 23 Sphingobacterium genus 28453 0 1 446 species Sphingobacterium mizutaii 1010 2609468 no rank 4 2255 0 0 1538644 Sphingobacterium sp. ML3W species 1 706 580 1 2003121 species Sphingobacterium sp. G1-14 0 0 1 539 Sphingobacterium sp. B29 species 1933220 1 430 743722 Sphingobacterium sp. 21 species 0 0 1 796 2 929509 Solitalea 3 genus Solitalea canadensis species 995 793 1 0 0 1 3514 6 84567 31 genus Pedobacter Pedobacter heparinus species 984 1 549 0 618 1 430522 species Pedobacter steynii 0 0 1 892 188932 Pedobacter cryoconitis species 1 651 no rank 2628915 0 651 1 Pedobacter sp. PACM 27299 species 1727164 0 1 773 species Pedobacter ginsengisoli 363852 0 1649482 Pseudopedobacter 2 genus 832 2 1 0 0 151895 species Pseudopedobacter saltans 1 830 84568 no rank 1 1088 0 0 1088 1 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 1 0 200643 Bacteroidia 29 class 70 12320 0 1 2496 12 1970189 10 Marinilabiliales order 1471398 family 1 Prolixibacteraceae 523 3 1 0 0 1 2 522 1471399 genus 1 Draconibacterium 0 species Draconibacterium orientale 1168034 521 1 0 1 3 547 2 Salinivirgaceae family 1970190 1 Salinivirga genus 1970191 545 2 1 0 544 1 species Salinivirga cyanobacteriivorans 1307839 0 1 0 family 2 Marinilabiliaceae 558415 3 491 1193324 Alkalitalea 3 genus 489 2 1 0 0 species Alkalitalea saponilacus 889453 486 1 0 1 2 925 1 Marinifilaceae family 1573805 924 1 genus 2060722 0 924 1 1717717 species Marinifilaceae bacterium SPP2 0 1 0 39 order Bacteroidales 171549 9795 57 303 2 1853231 family 0 303 2 1 Odoribacter genus 283168 0 1 302 1 Odoribacter splanchnicus species 28118 0 1 0 1 family Barnesiellaceae 2005519 148 3 0 1 2 147 Barnesiella 1 genus 397864 0 1 146 species Barnesiella viscericola 397865 815 4 family Bacteroidaceae 11 2420 1 0 1 0 816 34 Bacteroides genus 10 2416 species Bacteroides cellulosilyticus 246787 305 1 0 0 157 1 28113 species Bacteroides heparinolyticus Bacteroides thetaiotaomicron species 818 316 1 0 290053 species Bacteroides helcogenes 164 1 0 0 species Bacteroides zoogleoformans 28119 114 1 0 1796613 species Bacteroides caecimuris 233 1 283 1 Bacteroides ovatus species 28116 0 0 817 Bacteroides fragilis species 534 1 276 1 species Bacteroides caccae 47678 0 6 897 2005520 family 0 2 536 1784836 4 genus Fermentimonas 0 1 1 532 species Fermentimonas caenicola 1562970 0 294702 5 Proteiniphilum genus 214 2 1 0 1 209 1642647 Proteiniphilum saccharofermentans species 0 0 1 2 147 307628 1 Petrimonas genus 0 species Petrimonas mucosa 1642646 1 146 0 185291 no rank 238 1 Bacteroidales bacterium CF species 1400053 1 238 0 0 171550 family 4 340 1 0 genus 2 Mucinivorans 1611681 2 164 0 162 1 1433126 species Mucinivorans hirudinis 176 2 Alistipes 3 genus 239759 0 1 1 173 Alistipes finegoldii species 214856 0 333046 no rank 5 1817 0 1 0 511434 1 Candidatus Azobacteroides genus 934 2 0 933 1 511435 Candidatus Azobacteroides pseudotrichonymphae species 883 3 genus 909656 0 821 Bacteroides vulgatus species 1 302 0 0 1 302 376805 species Bacteroides salanitronis 357276 Bacteroides dorei species 279 1 0 1 0 171552 Prevotellaceae 2 family 11 1985 0 1 10 1983 838 26 Prevotella genus 0 549 1 28131 species Prevotella intermedia 126 1 76123 Prevotella enoeca species 0 species Prevotella jejuni 1177574 1 190 0 1 198 species Prevotella melaninogenica 28132 0 151 1 589436 Prevotella fusca species 0 Prevotella ruminicola species 839 137 1 0 1 192 52227 Prevotella dentalis species 0 species Prevotella denticola 28129 1 87 0 no rank 2638335 1 327 0 0 Prevotella sp. oral taxon 299 species 652716 1 327 0 1 497 2 2005523 1 family Paludibacteraceae 496 1 genus 346096 0 0 496 1 185300 species Paludibacter propionicigenes 1 0 Tannerellaceae 5 family 2005525 7 725 3 326 195950 2 Tannerella genus 0 1 1 155 no rank 2620507 0 0 712710 Tannerella sp. oral taxon HOT-286 species 1 155 0 species Tannerella forsythia 28112 169 1 1 0 6 genus Parabacteroides 375288 394 3 no rank 2649774 204 1 0 204 1 species Parabacteroides sp. CT06 2025876 0 species Parabacteroides distasonis 823 1 184 0 1 0 Porphyromonadaceae 2 family 171551 386 4 3 384 4 Porphyromonas genus 836 0 1 1 124 28123 Porphyromonas asaccharolytica species 0 837 Porphyromonas gingivalis species 1 256 0 1937959 1 class Saprospiria 7 980 1 0 1936988 Saprospirales 3 order 979 6 1 0 family 1937961 603 2 0 603 2 2349 genus 6 Haliscomenobacter 0 1 2350 species Haliscomenobacter hydrossis 1 597 0 0 1 3 373 family 1 Saprospiraceae 89374 0 1 2 372 Saprospira 6 genus 1007 1008 species Saprospira grandis 1 366 0 2963 16 1853228 Chitinophagia 4 class 0 1 0 1 2959 15 13 order Chitinophagales 1853229 14 2946 563835 family 37 Chitinophagaceae 0 1 0 1 604 3 5 genus Niabella 379899 0 1 309 species Niabella soli 446683 0 Niabella ginsenosidivorans species 1176587 1 290 0 1 2 470 398041 4 genus Flavisolibacter 0 1 466 1492898 Flavisolibacter tropicus species 0 1 2 392 354354 2 Niastella genus 0 1 390 Niastella koreensis species 354356 0 genus 79328 669 2 0 2029983 species Chitinophagaceae bacterium 13 322 1 347 1 species Chitinophaga pinensis 79329 0 1769012 3 Arachidicoccus genus 2 417 1 0 0 2636138 no rank 1 414 0 1850526 Arachidicoccus sp. BS20 species 414 1 0 1 2 357 649460 2 genus Filimonas 0 1 355 species Filimonas lacunae 477680 phylum 65842 293 2 0 0 2 293 204430 class 0 293 2 order 218872 0 family 204431 293 2 1 0 3 Fibrobacter genus 832 293 2 0 833 species Fibrobacter succinogenes 290 1 456828 phylum 377 2 0 2 377 456826 3 Candidatus Cloacimonas genus 0 1 374 1 Candidatus Cloacimonas acidaminovorans species 456827 0 0 18449 56 203691 phylum Spirochaetia 45 class 203692 18449 56 1 0 0 order 1643688 2681 8 0 1 8 2681 family 35 Leptospiraceae 170 6 2478 13 genus Leptospira 171 0 1 0 1 1091 173 Leptospira interrogans species 28183 species Leptospira santarosai 1 208 0 263 1 species Leptospira alstonii 28452 0 0 1 509 species Leptospira biflexa 172 394 1 174 Leptospira borgpetersenii species 0 338321 genus 168 1 0 1 168 29510 species Turneriella parva 0 136 35 order Spirochaetales 40 10987 1 0 1 0 family 19 Borreliaceae 1643685 17 7701 0 1 4168 8 138 117 genus Borrelia 1 589 species Borrelia recurrentis 44449 0 0 454 1 species Borrelia turicatae 142 Borrelia hermsii species 140 1 461 0 0 805 1 40834 Borrelia duttonii species 0 1 880 species Borrelia miyamotoi 47466 0 species Borrelia parkeri 141 1 448 0 1 414 143 Borrelia anserina species 0 1 3514 8 Borreliella 210 genus 64895 1 442 Borrelia mayonii species 1674146 0 453 1 species Borreliella bissettii 64897 0 463 1 species Borreliella afzelii 29518 0 0 1 328 62088 species Borreliella valaisiana 0 664662 species Borreliella bavariensis 1 350 0 Borreliella burgdorferi species 139 427 1 0 Borreliella garinii species 29519 841 1 0 1 3251 22 26 family Spirochaetaceae 137 0 1 12 1946 15 genus Treponema 157 species Treponema denticola 158 1 212 0 150829 Treponema azotonutricium species 101 1 0 0 409322 species Treponema pedis 304 1 no rank 2638727 86 1 0 0 1539298 Treponema sp. OMZ 838 species 1 86 species Treponema succinifaciens 167 283 1 0 0 1 75 53435 Treponema paraluiscuniculi species 88058 Treponema primitia species 191 1 0 1 253 221027 species Treponema putidum 0 0 species Treponema brennaborense 81028 1 110 215591 Treponema caldarium species 236 1 0 0 Treponema pallidum species 160 1 80 0 genus 1616789 1 282 0 1307761 Salinispira pacifica species 282 1 genus 1911556 1 232 0 55206 Sediminispirochaeta smaragdinae species 1 232 0 1 0 146 2 Spirochaeta genus 434 3 0 154 Spirochaeta thermophila species 1 218 214 1 46355 Spirochaeta africana species 0 0 1 4 331 399320 3 genus Sphaerochaeta 0 species Sphaerochaeta coccoides 273376 1 113 1131707 Sphaerochaeta pleomorpha species 1 134 0 species Sphaerochaeta globosa 1131703 1 81 0 0 1 7 4736 order 11 Brachyspirales 1643686 4725 6 8 family Brachyspiraceae 143786 0 1 4717 5 29521 23 genus Brachyspira 0 1 0 1400 1 52584 species Brachyspira pilosicoli 0 species Brachyspira hyodysenteriae 159 1190 1 84377 Brachyspira intermedia species 1 1094 0 Brachyspira murdochii species 84378 1010 1 0 95 15786 clade 1783257 0 74201 Verrucomicrobia 5 phylum 27 4167 1 0 669 2 417295 no rank 0 0 1637999 Verrucomicrobia bacterium IMCC26134 species 1 273 Verrucomicrobia bacterium species 2026799 396 1 0 1 0 203494 class 2 Verrucomicrobiae 506 6 1 0 4 order Verrucomicrobiales 48461 5 504 1 0 1647988 3 family Akkermansiaceae 4 500 3 497 239934 3 genus Akkermansia 0 1 232 1 species Akkermansia muciniphila 239935 0 0 1679444 Akkermansia glycaniphila species 1 262 0 1 2279 11 class 4 Opitutae 414999 6 1386 415000 Opitutales 16 order 0 1 1 0 134623 9 family Opitutaceae 1370 5 0 1 2 424 1961799 Lacunisphaera 3 genus species Lacunisphaera limnophila 1838286 421 1 0 178440 genus 423 1 0 species Opitutus terrae 107709 423 1 0 278955 no rank 1 514 0 0 794903 Opitutaceae bacterium TAV5 species 514 1 0 1 889 4 Puniceicoccales 2 order 415001 887 3 415002 2 family Puniceicoccaceae 0 1 0 1 2 885 Coraliomargarita 2 genus 442430 0 1 883 395922 species Coraliomargarita akajimensis class 1955630 587 5 0 1 0 order 1 Methylacidiphilales 717963 5 587 0 1 586 4 4 Methylacidiphilaceae family 717964 511745 Methylacidiphilum 1 genus 582 3 1 0 0 591154 Methylacidiphilum fumariolicum species 1 389 species Methylacidiphilum infernorum 511746 1 192 0 134549 class 2 121 0 3 genus Candidatus Xiphinematobacter 134550 2 121 1 0 2648876 no rank 1 118 0 1 118 Candidatus Xiphinematobacter sp. Idaho Grape species 1704307 0 1 0 203682 1 Planctomycetes phylum 36 7403 0 class 2517206 2 850 2 850 1127829 4 Candidatus Brocadiales order 0 1 846 1 1127830 family 0 0 380738 genus 1 846 0 846 1 Candidatus Kuenenia stuttgartiensis species 174633 666505 class 2 Phycisphaerae 7 950 1 0 0 1 646 4 666506 12 order Phycisphaerales 3 634 666507 5 Phycisphaeraceae family 0 1 1 0 Phycisphaera 1 genus 666508 2 629 0 1 628 547188 species Phycisphaera mikurensis 302 2 2483366 order 0 2483367 family 2 302 0 0 302 2 genus 2483368 139 1 1941349 species Phycisphaerae bacterium ST-PulAB-D4 0 Phycisphaerae bacterium L21-RPul-D3 species 1940790 1 163 0 0 1 5602 26 203683 class 21 Planctomycetia order 2691354 4 1178 0 0 174 1 2691358 family 174 1 genus 1676125 0 0 1 174 1331910 Thermogutta terrifontis species 1004 3 family 2691357 0 genus 123 1 469 0 469 1 Pirellula staleyi species 125 0 2 535 265488 2 Rhodopirellula genus 0 1 0 533 1 265606 species Rhodopirellula baltica 0 order 2691356 7 1395 1 0 1763524 family 12 Isosphaeraceae 1395 7 Isosphaera 4 genus 127 303 2 1 0 0 1 299 Isosphaera pallida species 128 2 625 Paludisphaera 4 genus 1763521 0 1 0 621 1 Paludisphaera borealis species 1387353 2 455 466152 6 Singulisphaera genus 0 1 1 449 466153 species Singulisphaera acidiphila 0 0 3 483 2691355 order 3 483 7 Gemmataceae family 1914233 0 1 0 1 476 2 genus 4 Gemmata 113 no rank 2622970 1 472 0 0 1630693 Gemmata sp. SH-PL17 species 1 472 1 0 112 Planctomycetales 71 order 11 2525 10 2454 22 family Planctomycetaceae 126 0 1 1 0 1936111 Fuerstia 1 genus 551 2 0 1891926 Fuerstia marisgermanicae species 550 1 0 1 2 416 1 Rubinisphaera genus 1649490 0 species Rubinisphaera brasiliensis 119 415 1 3 1258 4 Planctomyces genus 118 0 1 2 1254 2648843 no rank 0 1632864 species Planctomyces sp. SH-PL14 1 641 0 0 613 1 Planctomyces sp. SH-PL62 species 1636152 1 0 1649480 2 Planctopirus genus 207 2 205 1 120 Planctopirus limnophila species 0 0 phylum 134625 447 4 0 class 1921781 447 4 1 0 1921782 1 Kiritimatiellales order 447 4 446 3 1921783 Kiritimatiellaceae 4 family 0 1 442 2 1921784 1 genus Kiritimatiella 0 1 0 Kiritimatiella glycovorans species 1307763 441 1 0 3504 25 204428 phylum 3504 25 6 class Chlamydiia 204429 0 1 0 1 14 2506 8 order Chlamydiales 51291 1 Chlamydiaceae family 809 2498 13 1 0 12 2497 no rank 1113537 0 1 0 33 Chlamydia genus 810 2497 12 0 83560 species Chlamydia muridarum 1 148 83557 Chlamydia caviae species 194 1 0 Chlamydia abortus species 83555 230 1 0 0 178 1 species Chlamydia suis 83559 0 273 1 1457141 Chlamydia avium species 1 211 species Chlamydia trachomatis 813 0 0 273 1 83556 species Chlamydia felis 83554 species Chlamydia psittaci 1 271 0 1 243 85991 Chlamydia pecorum species 0 0 199 1 Chlamydia gallinacea species 1457153 0 83558 species Chlamydia pneumoniae 244 1 order 2 Parachlamydiales 1963360 10 992 1 0 1 0 family 1 Parachlamydiaceae 92713 606 4 0 1 214 genus 282132 0 1 214 Candidatus Protochlamydia naegleriophila species 389348 4 Parachlamydia genus 83551 2 391 1 0 0 387 1 species Parachlamydia acanthamoebae 83552 0 1 2 177 92714 4 Waddliaceae family 0 1 173 71666 genus 0 71667 Waddlia chondrophila species 1 173 92712 1 Simkaniaceae family 3 207 1 0 1 0 34093 1 genus Simkania 206 2 205 1 Simkania negevensis species 83561 0 0 phylum 256845 265 3 3 265 class 8 Lentisphaeria 1313211 0 1 0 1 2 257 order 2 Victivallales 278082 1674876 no rank 255 1 0 0 1 255 Victivallales bacterium CCUG 44730 species 2094242 0 phylum 1930617 2 389 0 389 2 1962850 class 1 Calditrichales order 1962852 2 389 1 0 0 1962854 family 1 388 genus 187144 1 388 0 187145 Caldithrix abyssi species 388 1 0 0 68297 phylum 6 1285 6 1285 1 class Dictyoglomia 203486 0 1 0 1 5 1284 order 5 Dictyoglomales 203487 Dictyoglomaceae 5 family 203488 4 1279 1 0 1 0 13 Dictyoglomus 6 genus 3 1274 631 1 species Dictyoglomus thermophilum 14 0 0 1 637 Dictyoglomus turgidum species 513050 0 phylum 57723 19 2268 2 266 class 1562566 0 4 Chloracidobacterium genus 458032 2 266 1 0 0 458033 Chloracidobacterium thermophilum species 1 262 Acidobacteriia 22 class 204432 2002 17 1 0 0 1 4 476 332160 Solibacterales 9 order 1 0 332161 4 family Solibacteraceae 467 3 1 0 6 Candidatus Solibacter genus 332162 2 463 332163 Candidatus Solibacter usitatus species 1 457 0 12 1504 204433 11 order Acidobacteriales 0 1 204434 5 family Acidobacteriaceae 1493 11 1 0 1 0 4 Terriglobus genus 392733 453 3 392734 Terriglobus roseus species 1 206 0 0 243 1 870903 Terriglobus saanensis species 0 1 3 475 940557 6 genus Granulicella 0 940615 Granulicella tundricola species 1 292 0 Granulicella mallensis species 940614 1 177 366 2 5 genus Acidobacterium 33973 0 1 1 361 Acidobacterium capsulatum species 33075 0 1 0 9 genus Candidatus Koribacter 658061 194 2 658062 species Candidatus Koribacter versatilis 185 1 0 clade 1783272 1653 4037287 0 0 1 37905 102 Tenericutes 8 phylum 544448 2 640 2799557 no rank 0 1912503 genus 1 Candidatus Izimaplasma 2 640 1 0 0 2624196 no rank 1 639 0 1 639 1541959 species Candidatus Izimaplasma sp. HR1 97 35980 31969 90 Mollicutes class 0 1 0 1 3522 13 186329 14 order Acholeplasmatales 1 0 Acholeplasmataceae 7 family 2146 3508 12 5 1959 9 genus Acholeplasma 2147 0 1 35623 species Acholeplasma oculi 1 525 0 0 307 1 Acholeplasma brassicae species 61635 459 1 Acholeplasma laidlawii species 2148 0 1 659 38986 Acholeplasma palmae species 0 6 1542 Candidatus Phytoplasma 14 genus 33926 0 1 85632 species group 325 1 0 0 1 325 species Candidatus Phytoplasma australiense 59748 species group 85630 1 325 0 0 325 1 Candidatus Phytoplasma mali species 37692 3 878 85620 species group 0 0 1 304 229545 species Aster yellows witches'-broom phytoplasma 0 Onion yellows phytoplasma species 100379 307 1 0 267 1 202462 species Maize bushy stunt phytoplasma 15875 39 29 Entomoplasmatales order 186328 0 1 33925 4 family Entomoplasmataceae 14 4761 1 0 1 0 52 Mesoplasma genus 46239 3372 8 447 1 Mesoplasma coleopterae species 324078 0 0 species Mesoplasma chauliocola 216427 1 427 0 1 377 225999 species Mesoplasma syrphidae 1 428 2149 Mesoplasma entomophilum species 0 0 284 1 138853 species Mesoplasma lactucae 423 1 Mesoplasma tabanidae species 219745 0 934 1 2151 Mesoplasma florum species 0 1 0 46238 13 Entomoplasma genus 5 1385 species Entomoplasma luminosum 214888 1 342 0 1 168 74700 species Entomoplasma freundtii 0 421 1 Entomoplasma somnilux species 215578 0 81459 species Entomoplasma melaleucae 1 441 0 0 1 24 11085 2131 16 family Spiroplasmataceae 11069 23 139 Spiroplasma genus 2132 0 1 0 Spiroplasma syrphidicola species 216945 1 365 216936 species Spiroplasma diminutum 1 686 0 species Spiroplasma cantharicola 362837 1 725 0 Spiroplasma helicoides species 216938 1 499 0 Spiroplasma eriocheiris species 315358 324 1 0 0 1 556 Spiroplasma corruscae species 216934 Spiroplasma culicicola species 216935 694 1 0 0 216933 species Spiroplasma chrysopicola 366 1 species Spiroplasma atrichopogonis 1114980 275 1 0 1 654 Spiroplasma floricola species 216937 0 0 1 478 2136 species Spiroplasma monobiae 2144 species Spiroplasma mirum 265 1 0 Spiroplasma clarkii species 2139 508 1 0 1 635 species Spiroplasma turonicum 216946 0 0 2 694 2637901 no rank 1898044 species Spiroplasma sp. TU-14 347 1 0 0 347 1 1914410 Spiroplasma sp. NBRC 100390 species species Spiroplasma kunkelii 47834 1 526 0 0 Spiroplasma taiwanense species 2145 754 1 0 1 492 species Spiroplasma citri 2133 0 Spiroplasma sabaudiense species 216944 1 352 0 species Spiroplasma apis 2137 1 414 0 668 1 Spiroplasma litorale species 216942 0 1 44 16493 Mycoplasmatales 29 order 2085 43 16464 2092 25 Mycoplasmataceae family 0 1 1 0 2129 1 genus Ureaplasma 3 810 0 2130 Ureaplasma urealyticum species 1 389 0 species Ureaplasma parvum 134821 1 420 0 4950 12 2767358 genus 1 490 Mycoplasma cynos species 171284 0 species Mycoplasma fermentans 2115 404 1 0 0 2109 species Mycoplasma synoviae 317 1 0 440 1 Mycoplasma agalactiae species 2110 0 2113 species Mycoplasma californicum 245 1 0 403 1 species Mycoplasma arginini 2094 1 460 Mycoplasma pulmonis species 2107 0 29555 Mycoplasma canis species 445 1 0 0 2112 Mycoplasma bovigenitalium species 1 349 Mycoplasma bovis species 28903 1 797 0 0 48003 species Mycoplasma pullorum 1 286 0 314 1 29553 Mycoplasma bovirhinis species 27 10679 2093 genus 139 Mycoplasma 0 1 0 51365 Mycoplasma yeatsii species 581 1 1 267 species Mycoplasma dispar 86660 0 species Mycoplasma flocculare 2128 1 227 0 1 494 Mycoplasma putrefaciens species 2123 0 0 species Mycoplasma wenyonii 65123 106 1 1 260 species Mycoplasma parvum 984991 0 0 171632 Mycoplasma ovis species 138 1 0 1 168 57372 Mycoplasma suis species 0 species Mycoplasma crocodyli 50052 502 1 0 1 49 2104 species Mycoplasma pneumoniae Mycoplasma arthritidis species 2111 1 194 0 Mycoplasma gallisepticum species 2096 1 318 0 0 species Mycoplasma hyopneumoniae 2099 565 1 398 1 Mycoplasma canadense species 29554 0 0 3 2731 656088 species group 765 1 species Mycoplasma capricolum 2095 0 2105 Mycoplasma leachii species 1 651 0 0 1315 1 Mycoplasma mycoides species 2102 0 no rank 2683645 312 1 0 species Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 1 312 1 353 45362 Mycoplasma bovoculi species 0 1 569 2118 Mycoplasma mobile species 0 0 1 207 2097 Mycoplasma genitalium species 28227 species Mycoplasma penetrans 538 1 0 1 584 Mycoplasma hominis species 2098 0 species Mycoplasma hyorhinis 2100 470 1 0 0 136241 species Mycoplasma haemocanis 1 186 0 323 1 Mycoplasma haemofelis species 29501 no rank 713063 1277 2 0 687 1 species Tenericutes bacterium MO-XQ 1911684 0 0 1911683 Tenericutes bacterium MZ-XQ species 590 1 0 1798711 clade 155 3559576 3559576 155 23 phylum Cyanobacteria 1117 0 1 307596 class 3 Gloeobacteria 540 6 1 0 307595 5 order Gloeobacterales 537 5 1 0 4 532 Gloeobacteraceae 10 family 1890422 0 1 1 0 6 Gloeobacter genus 33071 3 522 Gloeobacter kilaueensis species 1416614 1 235 0 0 species Gloeobacter violaceus 33072 281 1 0 no rank 1983111 1 550 0 718217 species cyanobacterium endosymbiont of Epithemia turgida 550 1 1 0 1161 60 Nostocales order 18726 34 0 1 1035 3 1892263 family 2 Hapalosiphonaceae 1 0 genus 9 Fischerella 1190 2 1033 0 494603 no rank 1024 1 1752063 Fischerella sp. NIES-3754 species 1024 1 0 0 1 10418 18 1162 family 45 Nostocaceae 0 1 4 2568 1163 31 genus Anabaena 0 2 1642 no rank 2619674 0 1647413 Anabaena sp. WA102 species 843 1 species Anabaena sp. 90 46234 1 799 0 0 1165 species Anabaena cylindrica 1 895 0 1 6420 10 1177 74 Nostoc genus 0 2593658 no rank 4899 7 609 1 Nostoc sp. PCC 7120 species 103690 0 1 804 1751286 Nostoc sp. NIES-3756 species 0 1 586 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 1618022 0 721 1 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 0 0 species Nostoc sp. PCC 7524 28072 746 1 1869241 species Nostoc sp. CENA543 1 624 0 317936 species Nostoc sp. PCC 7107 1 809 0 1 679 272131 species Nostoc punctiforme 0 1 768 1306274 Nostoc flagelliforme species 0 1 0 3 Trichormus genus 264688 3 1385 species Trichormus variabilis 264691 684 1 0 0 Trichormus azollae species 1164 1 698 0 1 1356 3 1185 family 29 Rivulariaceae 0 1 1327 2 7 Rivularia genus 373984 no rank 2676603 1 1320 0 1320 1 species Rivularia sp. PCC 7116 373994 0 8 5210 family 2661849 0 0 1 8 5210 46 Calothrix genus 1186 718 1 species Calothrix parietina 32054 0 0 2619626 no rank 6 4446 0 1 885 species Calothrix sp. NIES-4101 2005461 1337936 species Calothrix sp. 336/3 632 1 0 0 1 561 species Calothrix sp. NIES-3974 2005462 0 1 708 species Calothrix sp. NIES-2098 1954171 0 2005469 Calothrix sp. NIES-4071 species 1100 1 0 99598 species Calothrix sp. PCC 7507 560 1 1 647 1219117 no rank 0 0 647 1 species Nostocales cyanobacterium HT-58-2 1940762 0 1 54 3518878 1890424 131 order Synechococcales 0 1 3246601 5 22 family Prochloraceae 1213 1 0 1218 140 Prochlorococcus genus 4 3246579 2 763362 2627481 no rank 0 0 1 4707 1501269 species Prochlorococcus sp. MIT 0801 1 758655 Prochlorococcus sp. MIT 0604 species 1501268 0 0 1219 species Prochlorococcus marinus 2483077 1 1890436 family 1 503 0 1152 genus 503 1 0 0 2593292 no rank 503 1 0 82654 species Pseudanabaena sp. PCC 7367 1 503 0 1 1299 6 Leptolyngbyaceae 9 family 1890438 0 1 5 1290 Leptolyngbya 23 genus 47251 0 2650499 no rank 3 955 0 1 244 1080068 species Leptolyngbya sp. O-77 471 1 Leptolyngbya sp. PCC 7376 species 111781 0 0 1 240 1752064 species Leptolyngbya sp. NIES-3755 0 1184 species Leptolyngbya boryana 312 1 0 1 33 268723 1890426 family 48 Synechococcaceae 1129 837 Synechococcus genus 26 265017 1 0 0 2626047 no rank 263762 23 1 70713 species Synechococcus sp. WH 8109 166314 0 1 128275 110662 Synechococcus sp. CC9605 species 0 0 321332 Synechococcus sp. JA-2-3B'a(2-13) species 1 217 0 1 605 1173263 Synechococcus sp. PCC 7502 species 1280380 species Synechococcus sp. KORDI-100 21733 1 0 195248 species Synechococcus sp. PCC 8807 138 1 0 0 Synechococcus sp. SynAce01 species 1916956 1 926 316278 species Synechococcus sp. RCC307 1162 1 0 0 species Synechococcus sp. PCC 73109 374982 212 1 0 21586 1 Synechococcus sp. KORDI-52 species 585425 321327 Synechococcus sp. JA-3-3Ab species 164 1 0 0 species Synechococcus sp. CC9902 316279 1052 1 29410 Synechococcus sp. WH 8103 species 1 4295 0 0 1 3365 32051 species Synechococcus sp. WH 7803 Synechococcus sp. UTEX 2973 species 1350461 1 252 0 0 species Synechococcus sp. PCC 7003 374981 185 1 0 4276 1 84588 Synechococcus sp. WH 8102 species 1 1074 species Synechococcus sp. CC9311 64471 0 180 1 species Synechococcus sp. NIES-970 1827144 0 165 1 32049 species Synechococcus sp. PCC 7002 0 Synechococcus sp. KORDI-49 species 585423 1 2838 0 195253 species Synechococcus sp. PCC 6312 1 182 0 195498 Synechococcus sp. PCC 7117 species 1 167 0 163 1 33070 Synechococcus lividus species 0 0 255 1 32046 Synechococcus elongatus species 167375 31 genus Cyanobium 3 3057 1 0 species Cyanobium gracile 59930 1 1513 0 1513 1 2627006 no rank 0 0 Cyanobium sp. NIES-981 species 1851505 1513 1 2 422 1 genus Dactylococcopsis 13034 0 1 0 Dactylococcopsis salina species 292566 1 421 0 179 1 146785 genus 0 179 1 species Thermosynechococcus elongatus 146786 0 2 293 family 2303730 1 0 170610 7 Halomicronema genus 2 293 286 1 1209493 species Halomicronema hongdechloris 0 0 2 491 1890429 family 491 2 3 Acaryochloris genus 155977 0 1 Acaryochloris marina species 155978 488 1 0 1890428 family 4 837 0 0 1 4 837 17 genus Synechocystis 1142 0 no rank 2640012 3 820 0 292 1 1147 Synechocystis sp. PCC 6714 species 0 264 1 1148 Synechocystis sp. PCC 6803 species 1 264 Synechocystis sp. IPPAS B-1465 species 2116702 0 0 1301283 subclass 17214 47 0 1 5549 21 Oscillatoriales 47 order 1150 family 15 Microcoleaceae 1892252 5 2360 1 0 0 1 2012 2 1205 genus 3 Trichodesmium 1 2009 Trichodesmium erythraeum species 1206 0 0 1 2 333 44471 9 Microcoleus genus 0 2642155 no rank 324 1 1173027 species Microcoleus sp. PCC 7113 324 1 0 6 2033 1892254 family 27 Oscillatoriaceae 0 1 1 0 Oscillatoria 12 genus 1158 3 1065 1 460 482564 species Oscillatoria nigro-viridis 0 0 593 1 Oscillatoria acuminata species 118323 1155738 8 genus Moorea 2 941 1 0 1 933 1155739 Moorea producens species 0 Gomontiellaceae 1 family 1892255 3 553 1 0 2 552 3 genus Crinalium 241421 0 1 0 241425 species Crinalium epipsammum 1 549 1 0 1892251 Coleofasciculaceae 13 family 297 3 63132 2 Geitlerinema genus 284 2 1 0 1 282 no rank 2648775 0 0 282 1 1173025 species Geitlerinema sp. PCC 7407 0 1 259 3 1892249 Cyanothecaceae 14 family 1 0 29 genus Cyanothece 43988 245 2 0 216 1 2649277 no rank 216 1 395961 Cyanothece sp. PCC 7425 species 0 11665 26 1118 order 27 Chroococcales 0 1 1007 3 family 13 Cyanobacteriaceae 1890452 0 1 102234 Cyanobacterium 6 genus 994 2 1 0 0 988 1 379064 species Cyanobacterium aponinum 1 0 1890464 48 family Chroococcaceae 8 4939 102231 4 genus Gloeocapsa 556 2 1 0 552 1 2623012 no rank 0 0 Gloeocapsa sp. PCC 7428 species 1173026 552 1 1 0 7 genus Chondrocystis 268175 2 2038 0 1 2031 2648896 no rank 2031 1 species Chondrocystis sp. NIES-4102 2005460 0 1 0 Geminocystis 8 genus 669357 2297 3 2289 2 no rank 2625037 0 0 1193 1 Geminocystis sp. NIES-3708 species 1615909 0 1 1096 species Geminocystis sp. NIES-3709 1617448 1 0 1890449 14 Microcystaceae family 4 1504 1125 genus 14 Microcystis 3 1490 1 0 428 1 2643300 no rank 0 0 1 428 Microcystis sp. MC19 species 1967666 species Microcystis aeruginosa 1126 1048 1 0 0 1 10 4188 1890450 Aphanothecaceae 5 family 0 no rank 92682 2 408 1 0 3 Halothece genus 76023 408 2 no rank 2632878 1 405 0 0 405 1 65093 Halothece sp. PCC 7418 species 0 2 913 genus 2546365 0 2546366 species 913 2 0 444 1 Cyanothece sp. PCC 8802 strain 395962 469 1 41431 Cyanothece sp. PCC 8801 strain 0 0 2 1365 28070 genus species 2546356 618 1 0 0 618 1 65393 strain Cyanothece sp. PCC 7424 0 2546359 species 1 747 0 Cyanothece sp. PCC 7822 strain 497965 1 747 621 1 genus 263510 0 0 1 621 2546360 species 0 621 1 43989 strain Cyanothece sp. ATCC 51142 0 1 876 2 1453359 4 genus Candidatus Atelocyanobacterium 0 713887 Candidatus Atelocyanobacterium thalassa species 1 872 52604 3 order Pleurocapsales 3007 8 1 0 1890498 12 Dermocarpellaceae family 4 2612 1 0 3 2600 102115 Stanieria 20 genus 0 1 0 1293 1 no rank 2642663 1807358 Stanieria sp. NIES-3757 species 1 1293 0 0 1287 1 Stanieria cyanosphaera species 102116 392 3 1890500 3 Hyellaceae family 0 1 genus 5 Pleurocapsa 44474 2 389 1 0 Pleurocapsa minor species 54308 1 384 0 3 Chroococcidiopsidales order 1890505 638 4 1 0 1890528 family 11 Chroococcidiopsidaceae 635 3 1 0 3 Chroococcidiopsis genus 54298 2 624 1 0 621 1 54299 Chroococcidiopsis thermalis species 0 1 0 200795 phylum 1 Chloroflexi 2904 40 1382928 1 Ardenticatenia class 5 343 1 0 1 0 1382929 order 2 Ardenticatenales 342 4 0 1 340 3 1 Ardenticatenaceae family 1382930 1988031 1 Candidatus Promineofilum genus 2 339 1 0 1 338 1806508 Candidatus Promineofilum breve species 0 0 1 7 384 189775 Thermomicrobia 2 class 287 4 85000 subclass 0 1 0 1 order Sphaerobacterales 85001 4 287 0 286 3 255728 suborder 85002 family 7 Sphaerobacteraceae 286 3 1 0 2056 3 genus Sphaerobacter 279 2 1 0 2057 species Sphaerobacter thermophilus 1 276 0 0 2 95 189776 order 0 family 189777 95 2 1 0 499 Thermomicrobium 1 genus 2 95 Thermomicrobium roseum species 500 1 94 0 32061 4 Chloroflexia class 957 10 1 0 32064 Chloroflexales 14 order 953 9 1 0 0 1508595 suborder 4 423 4 423 1508635 2 Roseiflexaceae family 0 1 1 0 genus 1 Roseiflexus 120961 3 421 120962 species Roseiflexus castenholzii 1 198 0 no rank 2609473 222 1 0 357808 Roseiflexus sp. RS-1 species 1 222 0 0 suborder 1508594 4 516 0 516 4 1106 family 516 4 1107 8 genus Chloroflexus 0 1 0 152260 Chloroflexus aggregans species 1 218 290 2 1108 145 Chloroflexus aurantiacus species 0 1 Chloroflexus sp. Y-400-fl strain 480224 145 1 0 1 0 1 class Caldilineae 475962 240 4 0 1 239 3 475963 1 Caldilineales order 1 0 Caldilineaceae 2 family 475964 238 2 233191 genus 1 236 0 0 species Caldilinea aerophila 133453 236 1 5 421 class 292625 0 5 421 Anaerolineales 2 order 292629 0 1 4 family Anaerolineaceae 292628 419 4 1 0 158 1 genus 233189 0 0 1 158 167964 Anaerolinea thermophila species 0 2019482 genus 149 1 149 1 Brevefilum fermentans species 1986204 0 0 108 1 no rank 1324991 0 species Anaerolineaceae bacterium oral taxon 439 1889813 1 108 1 0 301297 class 1 Dehalococcoidia 558 8 214 3 genus 3 Dehalogenimonas 670486 0 1 0 1 108 1839801 Dehalogenimonas formicexedens species 552810 species Dehalogenimonas lykanthroporepellens 1 103 0 0 1 4 343 1202465 1 Dehalococcoidales order 342 3 1202464 family 0 0 1 3 342 4 Dehalococcoides genus 61434 1 78 no rank 237581 0 1 78 1522671 species Dehalococcoides sp. UCH007 0 0 260 1 Dehalococcoides mccartyi species 61435 0 1 158881 637 201174 phylum 11 Actinobacteria 0 4 915 1752188 no rank 0 1848755 Actinobacteria bacterium IMCC26077 species 1 189 311 1 Actinobacteria bacterium IMCC19121 species 1848754 0 1 261 1848756 Actinobacteria bacterium IMCC26103 species 0 0 1 154 Actinobacteria bacterium IMCC25003 species 1848255 1350 5 1497346 Thermoleophilia 2 class 0 1 0 1 1348 4 588673 order 25 Solirubrobacterales 3 1323 320583 Conexibacteraceae 4 family 0 1 0 1 1319 2 4 genus Conexibacter 191494 Conexibacter woesei species 191495 1 1315 0 84992 2 class Acidimicrobiia 7 1461 1 0 1459 6 84993 Acidimicrobiales 15 order 0 1 family 2448023 1067 2 0 15 genus Ilumatobacter 682522 1067 2 1 0 0 species Ilumatobacter coccineus 467094 1 1052 1 0 84994 6 family Acidimicrobiaceae 3 377 0 1 2 371 53634 genus 17 Acidimicrobium 0 1 354 Acidimicrobium ferrooxidans species 53635 0 1 457 6 4 Rubrobacteria class 84995 0 1 453 5 84996 14 order Rubrobacterales 1 0 3 family Rubrobacteraceae 84997 439 4 3 436 42255 2 genus Rubrobacter 0 1 0 49319 species Rubrobacter xylanophilus 248 1 0 186 1 species Rubrobacter radiotolerans 42256 585 151875 487 class Actinobacteria 1760 0 1 73 Streptomycetales order 85011 82 46738 1 0 2062 155 Streptomycetaceae family 46665 81 1 0 75 43437 genus 809 Streptomyces 1883 0 1 471 1 Streptomyces glaucescens species 1907 0 408015 species Streptomyces xiamenensis 329 1 0 1038928 species Streptomyces xinghaiensis 513 1 0 0 164348 species Streptomyces puniciscabiei 483 1 519 1 553510 species Streptomyces gilvosporeus 0 68570 species Streptomyces albulus 1766 1 0 1 587 1642299 species Streptomyces alfalfae 0 0 Streptomyces scabiei species 1930 1 612 0 1 408 42684 Streptomyces collinus species Streptomyces cyaneogriseus species 68192 380 1 0 0 455 1 Streptomyces niveus species 193462 0 species Streptomyces alboflavus 67267 625 1 1 406 Streptomyces sp. XZHG99 species 2049881 0 1 1141 Streptomyces venezuelae species 54571 0 0 species Streptomyces ambofaciens 1889 530 1 Streptomyces avermitilis species 33903 1 599 0 577 1 species Streptomyces albireticuli 1940 0 0 395 1 species Streptomyces parvulus 146923 0 1 1057 Streptomyces pactum species 68249 629295 species group 859 2 0 0 1 420 1482596 species subgroup 0 1 420 1911 species Streptomyces griseus 0 1 439 species subgroup 1482558 0 1 439 Streptomyces globisporus species 1908 0 species Streptomyces violaceoruber 1935 395 1 0 407 1 1169025 species Streptomyces pratensis 0 838 1 Streptomyces bingchenggensis species 379067 0 1969 Streptomyces chartreusis species 1 401 0 1 413 1437453 Streptomyces leeuwenhoekii species 0 930 1 75293 species Streptomyces autolyticus Streptomyces albus species 1888 1098 1 0 0 461 1 1783515 species Streptomyces sp. S10(2016) species Streptomyces griseochromogenes 68214 527 1 0 Streptomyces lydicus species 47763 1267 1 0 0 Streptomyces violaceusniger species 68280 533 1 398 1 285473 species Streptomyces rubrolavendulae 0 0 1 595 362257 species Streptomyces vietnamensis 1 587 92644 species Streptomyces malaysiensis 0 0 29303 Streptomyces cattleya species 1 466 1950 species Streptomyces peucetius 1 414 0 0 518 1 1914 species Streptomyces lavendulae Streptomyces hygroscopicus species 1912 1 1240 0 species Streptomyces pristinaespiralis 38300 490 1 0 Streptomyces clavuligerus species 1901 485 1 0 0 1477431 species group 1727 2 0 1266 1 species Streptomyces coelicolor 1902 1 461 42239 species Streptomyces sampsonii 0 12139 24 no rank 2593676 0 0 426 1 1661694 species Streptomyces sp. Tue 6075 0 862751 Streptomyces sp. SirexAA-E species 1 332 1 427 Streptomyces sp. TN58 species 234612 0 457 1 Streptomyces sp. WAC00288 species 2094021 0 0 1561022 Streptomyces sp. CCM_MD2014 species 1 423 Streptomyces sp. FR-008 species 206662 1 548 0 524 1 species Streptomyces sp. Mg1 465541 0 0 1 693 1964449 species Streptomyces sp. 3211 1 491 Streptomyces sp. MOE7 species 1961713 0 0 1 487 444103 Streptomyces sp. CNQ-509 species 562 1 1725411 species Streptomyces sp. CdTB01 0 0 Streptomyces sp. P3 species 2135430 645 1 0 1649184 Streptomyces sp. CFMR 7 species 1 439 0 species Streptomyces sp. Sge12 1972846 533 1 1495638 Streptomyces sp. M56 species 721 1 0 0 500 1 1984801 Streptomyces sp. CLI2509 species 635 1 Streptomyces sp. SAT1 species 1849967 0 Streptomyces sp. 4F species 1751294 472 1 0 1 414 species Streptomyces sp. S8 1837283 0 0 Streptomyces sp. RTd22 species 1841249 1 523 0 459 1 species Streptomyces sp. fd1-xmd 1812480 0 1 499 1262452 Streptomyces sp. 769 species 0 1 590 Streptomyces sp. CMB-StM0423 species 2059884 0 1 339 Streptomyces sp. PAMC 26508 species 1265601 0 1915 species Streptomyces lincolnensis 545 1 1971 Streptomyces noursei species 1 486 0 Streptomyces fulvissimus species 68202 1 417 0 1616117 species Streptomyces formicae 653 1 0 349 1 1355015 species Streptomyces pluripotens 0 0 1 529 1916 species Streptomyces lividans 0 1 608 1926 Streptomyces reticuli species 0 1 3073 5 Kitasatospora 19 genus 2063 1 1147 Kitasatospora albolonga species 68173 0 no rank 2633591 660 1 0 0 2018025 species Kitasatospora sp. MMS16-BH015 660 1 species Kitasatospora setae 2066 775 1 0 1 472 1894 Kitasatospora aureofaciens species 0 3 order Glycomycetales 85014 399 4 1 0 0 1 396 3 18 family Glycomycetaceae 85034 0 1 2 378 Stackebrandtia 7 genus 283810 0 371 1 283811 species Stackebrandtia nassauensis 375 1 no rank 52018 0 0 1 375 species Actinobacteria bacterium IMCC26256 1650658 1 0 order 3 Geodermatophilales 1643682 8 1258 7 1255 42 family Geodermatophilaceae 85030 0 1 0 1 2 422 1 Modestobacter genus 88138 Modestobacter marinus species 477641 1 421 0 1 0 3 genus Blastococcus 38501 2 391 0 138336 species Blastococcus saxobsidens 1 388 2 400 9 Geodermatophilus genus 1860 0 1 Geodermatophilus obscurus species 1861 1 391 0 1 0 18 order Pseudonocardiales 85010 42 14194 1 0 2070 132 family Pseudonocardiaceae 41 14176 1813 28 genus Amycolatopsis 7 3450 1 0 0 619 1 Amycolatopsis mediterranei species 33910 0 31958 Amycolatopsis orientalis species 1 884 no rank 2618356 2 976 0 0 Amycolatopsis sp. BJA-103 species 1911175 1 476 500 1 Amycolatopsis sp. AA4 species 1896961 0 0 521 1 208439 species Amycolatopsis japonica 1814 species Amycolatopsis methanolica 422 1 0 523 2 1835 2 genus Saccharopolyspora 0 1 1836 species Saccharopolyspora erythraea 521 1 0 0 1 2 257 2 Saccharomonospora genus 1851 0 1852 species Saccharomonospora viridis 255 1 2 523 8 genus Kutzneria 43356 0 1 0 1 515 43357 Kutzneria albida species 1 0 genus 2 Saccharothrix 2071 577 2 0 103731 Saccharothrix espanaensis species 1 575 165301 Lentzea 2 genus 2 640 1 0 0 638 1 1586287 species Lentzea guizhouensis 1 0 2 genus Prauserella 142577 2 386 0 1 384 Prauserella marina species 530584 1 0 65496 31 Actinoalloteichus genus 1920 6 0 340345 Actinoalloteichus hymeniacidonis species 264 1 0 425 1 1470176 Actinoalloteichus hoggarensis species 1612552 Actinoalloteichus sp. ADI127-7 species 1 446 0 0 2644606 no rank 754 2 species Actinoalloteichus sp. AHMU CJ021 2072503 372 1 0 0 Actinoalloteichus sp. GBA129-24 species 1612551 1 382 1 0 4 Kibdelosporangium genus 2029 552 2 species Kibdelosporangium phytohabitans 860235 1 548 0 1 0 1847 65 Pseudonocardia genus 8 3612 0 1 597 species Pseudonocardia dioxanivorans 240495 0 2950 6 no rank 2619320 0 1641402 Pseudonocardia sp. HH130629-09 species 402 1 0 1688404 species Pseudonocardia sp. EC080610-09 1 506 561 1 445576 species Pseudonocardia sp. AL041005-10 0 0 536 1 1690815 species Pseudonocardia sp. HH130630-07 0 502 1 Pseudonocardia sp. EC080619-01 species 1096856 1 443 Pseudonocardia sp. EC080625-04 species 1096868 0 456 2 genus 2 Alloactinosynnema 674734 0 1 0 1 454 no rank 2636053 1 454 Alloactinosynnema sp. L-07 species 1653480 0 40566 22 Actinosynnema genus 1148 3 1 0 577 1 species Actinosynnema mirum 40567 0 0 Actinosynnema pretiosum species 42197 1 549 0 243 1 order 622450 622451 family 1 243 0 genus 1849 243 1 0 414996 Actinopolyspora erythraea species 243 1 0 414714 order 18 Catenulisporales 1539 4 1 0 Catenulisporaceae 11 family 414877 3 1521 1 0 2 1510 414878 3 Catenulispora genus 0 1 0 1507 1 304895 Catenulispora acidiphila species 1 0 1643684 order 2 Nakamurellales 374 4 372 3 85031 9 family Nakamurellaceae 0 1 0 1 363 2 8 genus Nakamurella 53460 0 1 355 53461 species Nakamurella multipartita 1 0 1 order Kineosporiales 622452 4 433 3 432 family 1 Kineosporiaceae 83778 0 1 1 0 33981 genus 3 Kineococcus 2 431 0 428 1 131568 species Kineococcus radiotolerans 0 1 31 5331 85009 21 order Propionibacteriales 1 0 40 family Nocardioidaceae 85015 2792 13 0 1 2 557 2044 11 Pimelobacter genus 0 1 546 Pimelobacter simplex species 2045 1 0 Nocardioides 27 genus 1839 1096 4 0 244 1 2045452 Nocardioides sp. 78 species 372 1 2615069 no rank 0 0 196162 Nocardioides sp. JS614 species 372 1 0 453 1 450734 Nocardioides dokdonensis species 360 2 2040 Aeromicrobium 3 genus 0 1 0 2041 Aeromicrobium erythreum species 357 1 0 1 493 2 32 genus Kribbella 182639 0 1 461 species Kribbella flavida 182640 1 0 9 genus Micropruina 116071 2 246 0 1 237 species Micropruina glycogenica 75385 35 family Propionibacteriaceae 31957 2518 17 1 0 5 942 72763 11 genus Tessaracoccus 0 1 0 274 1 1332264 Tessaracoccus aquimaris species 0 Tessaracoccus flavescens species 399497 1 226 0 225 1 2635419 no rank 0 1 225 species Tessaracoccus sp. T2.5-30 1909732 0 206 1 1610493 species Tessaracoccus flavus 1 111 genus 203133 0 2633994 no rank 1 111 0 1 111 Propionimicrobium sp. Marseille-P3275 species 1871034 0 2801844 genus 1 170 0 170 1 species Pseudopropionibacterium propionicum 1750 0 3 345 genus 3 Propionibacterium 1743 0 1 0 no rank 2608905 1 73 0 1 73 Propionibacterium sp. oral taxon 193 species 671223 1744 Propionibacterium freudenreichii species 1 269 0 301 1 genus 1912215 0 0 species Acidipropionibacterium acidipropionici 1748 301 1 0 241 1 29404 genus 1 241 29405 species Microlunatus phosphovorus 0 1 0 genus 1 Cutibacterium 1912216 4 373 0 Cutibacterium avidum species 33010 1 172 0 Cutibacterium acnes species 1747 103 1 97 1 33011 species Cutibacterium granulosum 0 0 no rank 1643818 2 308 0 1 2 308 genus 4 Thermobispora 147067 0 1 304 2006 species Thermobispora bispora 85007 187 Corynebacteriales order 161 35580 1 0 1 0 1762 49 family Mycobacteriaceae 14898 57 2 470 genus 1073531 0 0 1 214 species Mycobacterium terrae 1788 0 875328 Mycobacterium sinense species 256 1 1 0 genus 5 Hoyosella 697025 2 144 0 639313 Hoyosella subflava species 139 1 8601 34 1763 genus 499 Mycobacterium 0 1 232 1 species Mycobacterium liflandii 261524 0 1 127 Mycobacterium haemophilum species 29311 0 70 1 1769 species Mycobacterium leprae 0 0 Mycobacterium kansasii species 1768 271 1 0 2249310 species group 1 245 species Mycobacterium shigaense 722731 1 245 0 0 1781 Mycobacterium marinum species 1 390 0 77643 species group 683 4 0 131 1 Mycobacterium canettii species 78331 species 203 Mycobacterium tuberculosis 1773 3 552 1 0 1 176 1765 Mycobacterium bovis biotype 0 173 1 Mycobacterium africanum biotype 33894 0 0 1 372 Mycobacterium dioxanotrophicus species 482462 0 13 3231 no rank 2642494 0 164757 species Mycobacterium sp. JLS 1 259 189918 species Mycobacterium sp. KMS 272 1 0 0 1 107 1168287 species Mycobacterium sp. MOTT36Y 281 1 1920667 species Mycobacterium sp. WY10 0 312 1 species Mycobacterium sp. djl-10 1879023 0 species Mycobacterium sp. JS623 212767 1 307 0 1545728 species Mycobacterium sp. EPa45 234 1 0 1682113 Mycobacterium sp. YC-RL4 species 1 273 0 0 species Mycobacterium sp. VKM Ac-1817D 1273687 229 1 256 1 164756 species Mycobacterium sp. MCS 0 0 Mycobacterium sp. QIA-37 species 1561223 153 1 0 species Mycobacterium sp. NRRL B-3805 1570328 1 252 0 Mycobacterium sp. PYR15 species 2051552 1 296 265 1 Mycobacterium ulcerans species 1809 0 2216 8 120793 species group 0 0 Mycobacterium paraintracellulare species 1138383 1 102 0 Mycobacterium avium species 1764 982 1 species Mycobacterium colombiense 339268 1 302 0 species Mycobacterium marseillense 701042 1 188 0 154 Mycobacterium intracellulare species 1767 4 642 1 0 0 1203599 Mycobacterium yongonense subspecies 1 125 0 1 93 subspecies Mycobacterium indicus pranii 35617 0 1 270 Mycobacterium chimaera subspecies 222805 5 1416 670516 genus 0 0 153 1 Mycobacterium stephanolepidis species 1520670 171 1 83262 species Mycobacterium immunogenum 0 158 1 1578165 Mycobacterium saopaulense species 0 0 1 172 1774 species Mycobacterium chelonae 36809 species Mycobacterium abscessus 1 762 0 0 13 4218 1866885 genus 0 1 349 species Mycobacterium chubuense 1800 134601 species Mycobacterium goodii 326 1 0 252 1 1795 Mycobacterium neoaurum species 0 0 110539 species Mycobacterium vanbaalenii 317 1 1 258 Mycobacterium litorale species 758802 0 Mycobacterium vaccae species 1810 327 1 0 species Mycobacterium rhodesiae 36814 256 1 0 1 423 1772 Mycobacterium smegmatis species 0 221 1 Mycobacterium fortuitum species 1766 0 506 1 1804 Mycobacterium gilvum species 0 Mycobacterium aurum species 1791 364 1 0 Mycobacterium thermoresistibile species 1797 1 238 0 381 1 Mycobacterium phlei species 1771 0 1 0 85025 61 family Nocardiaceae 31 10208 6932 23 1827 201 genus Rhodococcus 0 1 0 Rhodococcus erythropolis species 1833 312 1 0 1 391 132919 Rhodococcus jostii species 367 1 103816 species Rhodococcus pyridinivorans 0 1 241 1828 species Rhodococcus fascians 0 1014 1 Rhodococcus opacus species 37919 0 192944 no rank 2760 12 0 0 132 1 Rhodococcus sp. WMMA185 species 679318 0 184 1 1653479 Rhodococcus sp. PBTS 2 species 1727214 Rhodococcus sp. H-CA8f species 176 1 0 0 1 276 935199 Rhodococcus sp. p52 species 1653478 species Rhodococcus sp. PBTS 1 297 1 0 1 158 Rhodococcus sp. 008 species 1723645 0 0 1807790 species Rhodococcus sp. BH4 1 167 0 192 1 1564114 Rhodococcus sp. B7740 species 0 1 178 1045808 species Rhodococcus sp. YL-1 0 441 1 1033922 species Rhodococcus sp. WB1 0 1 242 Rhodococcus sp. 2G species 1570939 1805827 Rhodococcus sp. MTM3W5.2 species 317 1 0 1 316 species Rhodococcus rhodochrous 1829 0 0 386 1 191292 species Rhodococcus aetherivorans 0 334542 species Rhodococcus qingshengii 1 200 Rhodococcus hoagii species 43767 311 1 0 433 1 1830 species Rhodococcus ruber 0 7 3215 31 Nocardia genus 1817 0 1 0 1 435 455432 Nocardia terpenica species 0 135487 species Nocardia cyriacigeorgica 645 1 0 Nocardia farcinica species 37329 492 1 0 Nocardia seriolae species 37332 334 1 0 872 1 Nocardia brasiliensis species 37326 0 1 406 species Nocardia nova 37330 0 697024 no rank 1 90 genus 1847725 1 90 0 species Lawsonella clevelandensis 1528099 1 90 0 0 316606 family 2 157 286801 4 genus Segniliparus 157 2 1 0 0 153 1 286802 species Segniliparus rotundus 0 1 670 4 2 family Tsukamurellaceae 85028 genus 9 Tsukamurella 2060 3 668 1 0 246 1 species Tsukamurella paurometabola 2061 0 0 1 413 57704 Tsukamurella tyrosinosolvens species 1 0 Corynebacteriaceae 29 family 1653 52 7073 1 0 genus 121 Corynebacterium 1716 51 7044 0 Corynebacterium terpenotabidum species 89154 136 1 0 1721 species Corynebacterium callunae 1 100 Corynebacterium glutamicum species 1718 1 322 0 1072256 species Corynebacterium uterequi 1 608 0 0 159 1 43770 species Corynebacterium striatum 1652495 species Corynebacterium crudilactis 1 98 0 0 81 1 species Corynebacterium ureicelerivorans 401472 Corynebacterium falsenii species 108486 113 1 0 124 1 156978 species Corynebacterium imitans 0 169292 species Corynebacterium aurimucosum 1 91 0 232 1 38305 species Corynebacterium vitaeruminis 0 1408191 Corynebacterium deserti species 86 1 0 0 1 247 1223514 species Corynebacterium humireducens 92706 [Brevibacterium] flavum species 151 1 0 species Corynebacterium frankenforstense 1230998 206 1 0 100 1 42817 Corynebacterium argentoratense species 0 0 88 1 161895 Corynebacterium phocae species 0 1 76 146827 Corynebacterium simulans species 0 191493 Corynebacterium sphenisci species 232 1 0 1 121 Corynebacterium glyciniphilum species 1404244 0 1050174 Corynebacterium epidermidicanis species 1 72 95 1 Corynebacterium camporealensis species 161896 0 0 Corynebacterium resistens species 258224 103 1 35757 Corynebacterium cystitidis species 123 1 0 0 1 154 species Corynebacterium diphtheriae 1717 0 44 1 species Corynebacterium kroppenstedtii 161879 349751 Corynebacterium marinum species 1 180 0 161899 Corynebacterium singulare species 1 95 0 0 1 183 Corynebacterium maris species 575200 0 Corynebacterium ammoniagenes species 1697 1 55 0 Corynebacterium stationis species 1705 91 1 1 175 species Corynebacterium kutscheri 35755 0 0 Corynebacterium doosanense species 1121358 1 132 571915 Corynebacterium mustelae species 1 106 0 177 2 2624378 no rank 0 1487956 species Corynebacterium sp. ATCC 6931 62 1 0 Corynebacterium sp. NML98-0116 species 702967 115 1 0 0 1 127 1719 species Corynebacterium pseudotuberculosis 71 1 28028 Corynebacterium flavescens species 0 0 1 203 species Corynebacterium halotolerans 225326 0 species Corynebacterium testudinoris 136857 1 120 43771 Corynebacterium urealyticum species 141 1 0 0 1 220 species Corynebacterium variabile 1727 1231000 Corynebacterium lactis species 65 1 0 187491 Corynebacterium glaucum species 101 1 0 0 160386 species Corynebacterium casei 1 88 126 1 152794 species Corynebacterium efficiens 0 0 124 1 203263 species Corynebacterium aquilae 0 Corynebacterium ulcerans species 65058 1 115 species Corynebacterium atypicum 191610 1 102 0 38289 species Corynebacterium jeikeium 164 1 0 family 4 Dietziaceae 85029 4 468 1 0 0 1 464 3 5 Dietzia genus 37914 2617939 no rank 1 290 0 290 1 species Dietzia sp. oral taxon 368 712270 0 0 species Dietzia timorensis 499555 169 1 9 1829 85026 Gordoniaceae 5 family 0 1 0 1 1824 8 22 genus Gordonia 2053 0 2657482 no rank 2 484 1 200 species Gordonia sp. YC-JH1 2059875 0 0 species Gordonia sp. KTR9 337191 284 1 0 species Gordonia bronchialis 2054 1 295 0 1004901 Gordonia iterans species 244 1 species Gordonia polyisoprenivorans 84595 262 1 0 247 1 Gordonia terrae species 2055 0 1136941 species Gordonia phthalatica 1 270 0 1 0 85013 22 Frankiales order 2522 7 6 2500 74712 26 Frankiaceae family 0 1 1 0 1854 Frankia 24 genus 5 2474 0 106370 species Frankia casuarinae 1 417 Frankia alni species 1859 1 786 0 0 no rank 2632575 588 1 0 species Frankia sp. EAN1pec 298653 1 588 0 298654 Frankia inefficax species 659 1 order 7 Actinomycetales 2037 20 2023 1 0 0 1 19 2016 Actinomycetaceae 37 family 2049 0 1 115 2529408 genus 115 1 species Actinomyces meyeri 52773 0 0 1 1437 9 1654 48 Actinomyces genus 0 544580 Actinomyces oris species 177 1 1 66 species Actinomyces pacaensis 1852377 0 1912795 species Actinomyces sp. VUL4_3 68 1 0 0 no rank 2609248 620 3 Actinomyces sp. Chiba101 species 1851395 229 1 0 2081702 Actinomyces sp. oral taxon 897 species 1 138 0 712122 species Actinomyces sp. oral taxon 414 253 1 0 0 1 267 Actinomyces radicidentis species 111015 species Actinomyces gaoshouyii 1960083 191 1 0 2 113 Trueperella 1 genus 1069494 0 1 0 112 1 1661 Trueperella pyogenes species 1 Mobiluncus genus 2050 2 121 1 0 0 Mobiluncus curtisii species 2051 120 1 2 Arcanobacterium genus 28263 108 2 1 0 106 1 species Arcanobacterium haemolyticum 28264 0 1 0 Actinotignum 1 genus 1653174 85 2 84 1 Actinotignum schaalii species 59505 0 1 0 85006 151 Micrococcales order 137 23863 85021 family 12 Intrasporangiaceae 1369 9 1 0 0 1 2 353 1 Serinicoccus genus 265976 0 1758689 Serinicoccus sp. JLT9 species 352 1 1 0 267408 3 genus Arsenicicoccus 2 336 333 1 2663846 no rank 0 0 1658671 Arsenicicoccus sp. oral taxon 190 species 1 333 381 2 53457 18 Janibacter genus 0 1 0 1 363 857417 Janibacter indicus species 53357 5 genus Intrasporangium 287 2 1 0 0 species Intrasporangium calvum 53358 282 1 1 0 71 family Microbacteriaceae 85023 46 9423 0 genus 1434032 100 1 100 1 species Pontimonas salivibrio 1159327 0 1 0 33886 Rathayibacter 3 genus 3 384 0 145458 species Rathayibacter toxicus 181 1 Rathayibacter tritici species 33888 200 1 0 6 1240 1573 31 genus Clavibacter 0 1 1 0 28447 229 Clavibacter michiganensis species 1209 5 Clavibacter capsici subspecies 1874630 266 1 0 0 Clavibacter sepedonicus subspecies 31964 250 1 0 1 232 31963 subspecies Clavibacter nebraskensis 0 subspecies Clavibacter insidiosus 33014 232 1 1 0 12 Cryobacterium genus 69578 541 3 0 Cryobacterium arcticum species 670052 1 288 0 2649013 no rank 1 241 Cryobacterium sp. LW097 species 1978566 241 1 0 genus 1705353 109 1 0 0 Aurantimicrobium minutum species 708131 1 109 no rank 1655488 293 3 0 1655489 clade 3 293 0 0 1 3 293 8 Rhodoluna genus 529883 0 123 1 species Candidatus Rhodoluna planktonica 535712 529884 species Rhodoluna lacicola 1 162 0 337004 genus 195 1 0 0 Microcella alkaliphila species 279828 195 1 336 2 4 Cnuibacter genus 1759331 0 1 1 332 Cnuibacter physcomitrellae species 1619308 0 110932 7 Leifsonia genus 504 2 1 0 497 1 1575 species Leifsonia xyli 0 288 2 518733 Microterricola 3 genus 0 1 0 285 1 species Microterricola viridarii 412690 33877 3 Agromyces genus 2 414 1 0 0 453304 species Agromyces aureus 1 411 0 genus 447237 635 1 no rank 2626248 635 1 0 0 1795630 species Frondihabitans sp. PAMC 28766 635 1 14 3343 33882 56 Microbacterium genus 0 1 0 1 243 36805 Microbacterium aurum species 8 2036 no rank 2609290 0 0 2103230 species Microbacterium sp. str. 'China' 227 1 224 1 species Microbacterium sp. PAMC 28756 1795053 0 0 207 1 species Microbacterium sp. 1.5R 1916917 0 species Microbacterium sp. BH-3-3-3 1906742 299 1 0 Microbacterium sp. TPU 3598 species 1938334 229 1 241 1 1696072 species Microbacterium sp. CGR1 0 0 1 391 1714373 Microbacterium sp. No. 7 species 0 Microbacterium sp. XT11 species 367477 1 218 1 235 300019 Microbacterium paludicola species 0 0 1 287 2033 species Microbacterium testaceum 84292 species Microbacterium chocolatum 1 193 0 0 Microbacterium hominis species 162426 293 1 0 1 4 970 2034 Curtobacterium 15 genus 0 257496 no rank 609 2 Curtobacterium sp. BH-2-1-1 species 1905847 1 277 0 Curtobacterium sp. MR_MD2014 species 1561023 332 1 0 species Curtobacterium pusillum 69373 346 1 0 64 1 85022 family 0 43673 genus 1 64 0 1 64 species Jonesia denitrificans 43674 0 66 family Micrococcaceae 1268 5359 37 1 0 1 181 1742992 genus 0 Paenarthrobacter aurescens species 43663 1 181 0 0 genus 2078575 1 118 0 1 118 1618207 Arthrobacter sp. IHBB 11108 species 1 0 1742993 8 Pseudarthrobacter genus 4 565 163 1 Pseudarthrobacter sulfonivorans species 121292 0 1 191 species Pseudarthrobacter phenanthrenivorans 361575 0 1 203 85085 Pseudarthrobacter chlorophenolicus species 0 0 79 1 1645 genus 0 1 79 species Renibacterium salmoninarum 1646 0 1 4 595 5 Kocuria genus 57493 0 72000 species Kocuria rhizophila 151 1 446860 species Kocuria flava 252 1 0 species Kocuria palustris 71999 187 1 0 0 1 15 2714 1663 76 Arthrobacter genus 0 180 1 37928 Arthrobacter crystallopoietes species 0 1 245 Arthrobacter alpinus species 656366 235627 no rank 12 2213 0 0 1771959 Arthrobacter sp. ATCC 21022 species 1 127 1806905 Arthrobacter sp. ZXY-2 species 164 1 0 1 205 Arthrobacter sp. QXT-31 species 1357915 0 0 388 1 2079227 Arthrobacter sp. PGP41 species 1494608 Arthrobacter sp. PAMC 25486 species 167 1 0 0 Arthrobacter sp. YN species 2020486 1 154 1652545 Arthrobacter sp. YC-RL1 species 1 148 0 0 species Arthrobacter sp. FB24 290399 1 160 species Arthrobacter sp. LS16 1690248 1 165 0 1704044 Arthrobacter sp. ERGS1:01 species 217 1 0 0 Arthrobacter sp. Rue61a species 1118963 1 119 0 1849032 species Arthrobacter sp. U41 1 199 0 2 171 32207 genus 0 43675 Rothia mucilaginosa species 89 1 82 1 species Rothia dentocariosa 2047 0 1 0 2 Micrococcus genus 1269 198 2 species Micrococcus luteus 1270 196 1 0 2 348 5 genus Sinomonas 596707 0 1 0 343 1 species Sinomonas atrocyanea 37927 1 0 1868332 3 genus Neomicrococcus 104 2 0 556325 species Neomicrococcus aestuarii 101 1 0 1 220 2 1742989 Glutamicibacter 3 genus species Glutamicibacter arilaitensis 256701 217 1 0 775 6 145357 3 Dermacoccaceae family 0 1 0 200 1 genus 57499 0 1 200 1276 Kytococcus sedentarius species 2 262 57495 2 Dermacoccus genus 0 1 1274 Dermacoccus nishinomiyaensis species 260 1 0 1 0 genus 2 Luteipulveratus 745364 2 310 0 Luteipulveratus mongoliensis species 571913 308 1 85017 Promicromonosporaceae 15 family 2001 9 1 0 13 genus Isoptericola 254250 757 3 1 0 0 species Isoptericola variabilis 139208 358 1 0 1 386 372663 species Isoptericola dokdonensis 846 3 genus 3 Cellulosimicrobium 157920 0 1 0 no rank 2624466 412 1 Cellulosimicrobium sp. TH-20 species 1980001 1 412 0 0 1710 Cellulosimicrobium cellulans species 431 1 3 Xylanimonas genus 186188 383 2 1 0 0 species Xylanimonas cellulosilytica 186189 1 380 2 137 85018 family 0 2 genus Dermatophilus 1862 137 2 1 0 135 1 Dermatophilus congolensis species 1863 0 0 133 1 577468 no rank 1 133 2038 genus 0 2039 species Tropheryma whipplei 1 133 0 1 0 1 family Sanguibacteraceae 145360 3 358 60919 3 Sanguibacter genus 2 357 1 0 0 60920 species Sanguibacter keddieii 354 1 1 0 10 family Dermabacteraceae 85020 11 1916 98 2 36739 1 Dermabacter genus 0 1 97 1 1630135 species Dermabacter vaginalis 0 43668 14 genus Brachybacterium 6 1671 1 0 0 1 310 Brachybacterium ginsengisoli species 1331682 species Brachybacterium sp. VR2415 2017485 213 1 0 1 509 2017484 species Brachybacterium sp. VM2412 0 0 43669 species Brachybacterium faecium 311 1 no rank 2623841 314 1 0 1903186 species Brachybacterium sp. P6-10-X1 314 1 0 0 1 2 137 genus 21 Devriesea 472568 0 1 116 Devriesea agamarum species 472569 1 0 85019 11 family Brevibacteriaceae 363 3 352 2 1696 3 genus Brevibacterium 0 1 0 1 349 species Brevibacterium linens 1703 125316 family 439 2 0 0 1 2 439 2 Beutenbergia genus 84756 0 437 1 84757 Beutenbergia cavernae species 1375 6 6 Cellulomonadaceae family 85016 0 1 0 1 1369 5 1707 15 Cellulomonas genus 0 1 324 no rank 2620175 0 1 324 species Cellulomonas sp. PSBB021 2003551 0 1711 Cellulomonas flavigena species 357 1 11 Cellulomonas gilvus species 291 1 0 Cellulomonas fimi species 1708 1 382 0 85012 33 order Streptosporangiales 3449 16 1 0 1 0 5 family Thermomonosporaceae 2012 3 338 0 1 333 2 2019 11 genus Thermomonospora 322 1 2020 species Thermomonospora curvata 0 7 1343 83676 13 Nocardiopsaceae family 0 1 0 1 196 2 genus 1 Thermobifida 83677 0 Thermobifida fusca species 2021 1 195 1 0 2013 32 genus Nocardiopsis 1134 4 Nocardiopsis gilva species 280236 1 352 0 2014 Nocardiopsis dassonvillei species 1 475 0 0 1 275 53437 species Nocardiopsis alba 1 0 2004 family 8 Streptosporangiaceae 1735 5 1 genus Streptosporangium 2000 2 731 1 0 species Streptosporangium roseum 2001 730 1 0 9 Nonomuraea genus 83681 996 2 1 0 1 987 no rank 2593643 0 0 1909395 species Nonomuraea sp. ATCC 55076 987 1 order 7 Bifidobacteriales 85004 26 2840 1 0 31953 family 11 Bifidobacteriaceae 25 2833 1 0 1 0 1 Gardnerella genus 2701 2 387 386 1 species Gardnerella vaginalis 2702 0 0 196082 genus 1 50 0 78258 Parascardovia denticolens species 1 50 0 1 19 2299 1678 33 Bifidobacterium genus 0 1683 Bifidobacterium angulatum species 94 1 0 1 201 1694 Bifidobacterium pseudolongum species 0 Bifidobacterium longum species 216816 1 292 1685 Bifidobacterium breve species 1 191 0 1 178 species Bifidobacterium scardovii 158787 0 0 96 1 1680 Bifidobacterium adolescentis species 136 1 28025 Bifidobacterium animalis species 0 0 35760 Bifidobacterium choerinum species 182 1 157 1 Bifidobacterium actinocoloniiforme species 638619 0 79 1 Bifidobacterium pseudocatenulatum species 28026 0 0 73 1 1691 species Bifidobacterium indicum 0 1 137 Bifidobacterium bifidum species 1681 0 species Bifidobacterium thermophilum 33905 71 1 0 species Bifidobacterium asteroides 1684 1 64 0 1 69 species Bifidobacterium coryneforme 1687 Bifidobacterium dentium species 1689 71 1 0 0 1 175 2 77 Bifidobacterium catenulatum species 1686 0 1 98 subspecies Bifidobacterium kashiwanohense 630129 86 2 196081 2 Scardovia genus 0 1 0 1 84 78259 Scardovia inopinata species 1 0 18 Candidatus Nanopelagicales order 2039638 3413 12 3395 11 family 2162846 0 0 1 1780 7 622681 12 genus Candidatus Planktophila Candidatus Planktophila lacus species 1884913 1 335 0 0 322 1 573600 Candidatus Planktophila limnetica species 354 1 species Candidatus Planktophila dulcis 1884914 0 Candidatus Planktophila vernalis species 1884907 256 1 0 0 1884905 Candidatus Planktophila versatilis species 1 307 0 species Candidatus Planktophila sulfonica 1884904 1 194 2039639 Candidatus Nanopelagicus 4 genus 1615 4 1 0 0 490 1 Candidatus Nanopelagicus hibericus species 1884915 644 1 1884916 species Candidatus Nanopelagicus abundans 0 1 477 1884634 Candidatus Nanopelagicus limnes species 0 182 2 1643683 order 0 0 family 85032 182 2 0 1 2 182 28048 5 Acidothermus genus 1 177 species Acidothermus cellulolyticus 28049 0 1 0 5 Micromonosporales order 85008 6324 20 6319 19 102 family Micromonosporaceae 28056 0 1 0 1 473 3 Salinispora 15 genus 168694 168695 Salinispora tropica species 1 222 0 0 168697 species Salinispora arenicola 236 1 1442 4 673534 genus 18 Plantactinospora 0 1 no rank 2631981 1424 3 0 0 2024580 species Plantactinospora sp. KBS50 489 1 0 1 466 2108470 species Plantactinospora sp. BC1 1 469 Plantactinospora sp. BB1 species 2071627 0 28 Micromonospora genus 1873 4 1493 1 0 0 Verrucosispora maris species 1003110 1 402 550 1 Micromonospora aurantiaca species 47850 0 0 1 513 no rank 2617518 648999 species Micromonospora sp. L5 1 513 0 54 Actinoplanes genus 1865 2803 6 1 0 0 1866 Actinoplanes missouriensis species 551 1 1717 3 2626549 no rank 0 0 species Actinoplanes sp. N902-109 649831 563 1 0 species Actinoplanes sp. SE50 2033844 577 1 0 577 1 species Actinoplanes sp. SE50/110 134676 0 196914 species Actinoplanes friuliensis 481 1 0 84593 genus Verrucosispora 6 1 0 1 2812 29 Coriobacteriia 14 class 84998 0 1 1710 15 Eggerthellales 18 order 1643822 14 1692 28 family Eggerthellaceae 1643826 0 1 0 84108 genus 1 109 0 Slackia heliotrinireducens species 84110 109 1 3 370 84111 4 Eggerthella genus 0 1 0 253 1 species Eggerthella lenta 84112 0 1 113 2648737 no rank 1 113 species Eggerthella sp. YY7918 502558 0 0 111 1 79603 genus 0 79604 Denitrobacterium detoxificans species 1 111 1 0 Phoenicibacter 1 genus 1981050 2 286 0 285 1 1944646 Phoenicibacter massiliensis species 84162 genus 1 108 0 0 1 108 species Cryptobacterium curtum 84163 genus 17 Gordonibacter 644652 3 520 1 0 0 Gordonibacter massiliensis species 1841863 257 1 0 1 246 species Gordonibacter urolithinfaciens 1335613 160 2 447020 1 genus Adlercreutzia 0 1 159 1 Adlercreutzia equolifaciens species 446660 0 1 0 14 Coriobacteriales order 84999 1088 13 0 1 6 342 84107 7 Coriobacteriaceae family 1 0 Collinsella 3 genus 102106 129 2 0 126 1 Collinsella aerofaciens species 74426 1 0 33870 3 Coriobacterium genus 92 2 0 1 89 species Coriobacterium glomerans 33871 1 114 84113 no rank 0 0 1531429 species Coriobacteriaceae bacterium 68-1-3 114 1 1 0 10 family Atopobiaceae 1643824 6 732 4 530 11 Olsenella genus 133925 0 1 species Olsenella uli 133926 152 1 0 0 186 1 Olsenella sp. Marseille-P2300 species 1805478 0 181 1 2638792 no rank 0 1 181 Olsenella sp. oral taxon 807 species 712411 192 1 genus 2767353 0 192 1 1382 Atopobium parvulum species 0 155 1 1859062 no rank 0 genus 262406 1 155 0 Thermobaculum terrenum species 166501 155 1 0 35 4778 1297 phylum 0 0 1 4778 35 188787 16 class Deinococci order 23 Deinococcales 118964 2404 15 1 0 0 1 14 2381 Deinococcaceae 9 family 183710 0 1 13 2372 1298 Deinococcus 41 genus 1 167 species Deinococcus radiodurans 1299 0 1 262 Deinococcus gobiensis species 502394 0 species Deinococcus deserti 310783 1 133 0 0 species Deinococcus peraridilitoris 432329 1 199 0 263 1 55148 species Deinococcus proteolyticus 0 species Deinococcus actinosclerus 1768108 213 1 species Deinococcus geothermalis 68909 1 130 0 0 2623546 no rank 190 1 species Deinococcus sp. NW-56 2080419 190 1 0 species Deinococcus puniceus 1182568 110 1 0 1 209 species Deinococcus soli Cha et al. 2016 1309411 0 0 309887 species Deinococcus maricopensis 264 1 1182571 species Deinococcus swuensis 1 191 0 17 2063 14 order Thermales 68933 0 1 188786 25 family Thermaceae 2049 16 1 0 1 0 3 genus Meiothermus 65551 424 3 173 1 species Meiothermus silvanus 52022 0 Meiothermus ruber species 277 1 248 0 0 1 161 2 1 Marinithermus genus 186191 0 160 1 186192 species Marinithermus hydrothermalis 0 1 8 1150 270 20 genus Thermus 1 146 Thermus oshimai species 56957 0 1 136 56956 species Thermus brockianus 0 1 128 species Thermus parvatiensis 456163 0 species Thermus thermophilus 274 365 1 0 0 Thermus scotoductus species 37636 92 1 125 1 271 species Thermus aquaticus 0 no rank 2619321 1 138 0 1111069 Thermus sp. CCB_US3_UF1 species 138 1 0 0 1 289 2 2 genus Oceanithermus 208447 0 1 287 187137 Oceanithermus profundus species 295 2 2762275 order 0 family 332247 295 2 0 10 genus Truepera 332248 2 295 1 0 1 285 332249 Truepera radiovictrix species 0 1 0 65 Firmicutes phylum 1239 678 272861 0 1 193 102856 124 class Clostridia 186801 0 order 2770089 500 3 108 2 2770093 family 0 291988 1 Thermosediminibacter genus 108 2 1 0 291990 species Thermosediminibacter oceani 107 1 0 2770092 family 392 1 0 0 392 1 genus 499228 0 392 1 499229 species Tepidanaerobacter acetatoxydans 1 0 20 Thermoanaerobacterales order 68295 13167 32 0 170 1 family 543372 0 1 170 252965 genus 252966 Mahella australiensis species 1 170 0 1 0 543371 Thermoanaerobacterales Family III. Incertae Sedis 7 family 13 6137 94 Caldicellulosiruptor genus 44000 9 4593 1 0 0 Caldicellulosiruptor bescii species 31899 1 682 0 1 515 413888 species Caldicellulosiruptor hydrothermalis 0 species Caldicellulosiruptor kronotskyensis 413889 664 1 0 1 499 species Caldicellulosiruptor lactoaceticus 52766 1 488 52765 Caldicellulosiruptor kristjanssonii species 0 0 55205 species Caldicellulosiruptor owensensis 516 1 549 1 717609 species Caldicellulosiruptor obsidiansis 0 1 586 species Caldicellulosiruptor saccharolyticus 44001 0 3 1537 7 Thermoanaerobacterium genus 28895 0 1 0 1 540 29329 species Thermoanaerobacterium xylanolyticum 0 990 1 1517 species Thermoanaerobacterium thermosaccharolyticum 1 0 186814 9 family Thermoanaerobacteraceae 16 6170 1 406 genus 249529 0 1 406 911092 species Caldanaerobacter subterraneus 0 0 1 126 140458 genus 0 126 1 85874 Thermacetogenium phaeum species 0 genus 129957 278 1 Carboxydothermus hydrogenoformans species 129958 1 278 0 1 0 231 genus Thermoanaerobacter 1754 5140 9 0 1 628 Thermoanaerobacter mathranii species 583357 1 563 Thermoanaerobacter brockii species 29323 0 Thermoanaerobacter pseudethanolicus species 496866 1 563 0 0 2 1351 2636821 no rank 0 399726 species Thermoanaerobacter sp. X514 649 1 0 573062 Thermoanaerobacter sp. X513 species 1 702 1 570 species Thermoanaerobacter kivui 2325 0 0 108150 species Thermoanaerobacter italicus 601 1 0 46354 species Thermoanaerobacter wiegelii 633 1 3 211 no rank 42857 0 0 42837 genus 77 1 1 77 42838 species Ammonifex degensii 0 0 1 134 2 2 Moorella genus 44260 1 132 1525 species Moorella thermoacetica 0 670 1 family 227387 0 genus 227388 670 1 0 1 670 Thermodesulfobium narugense species 184064 0 0 1 547 4 485256 3 Natranaerobiales order 0 1 3 544 485255 1 Natranaerobiaceae family 2 543 375928 Natranaerobius 5 genus 0 1 0 538 1 375929 Natranaerobius thermophilus species 4409 12 53433 16 Halanaerobiales order 0 1 1 0 53434 Halobacteroidaceae 4 family 1413 5 2 914 7 Halobacteroides genus 42417 0 1 907 1 Halobacteroides halobius species 42422 0 1 0 28186 6 Acetohalobium genus 495 2 0 489 1 28187 Acetohalobium arabaticum species 1 0 972 11 Halanaerobiaceae family 6 2980 0 1 2487 3 2330 6 Halanaerobium genus 0 1 1367 2331 Halanaerobium praevalens species 1114 1 species Halanaerobium hydrogeniformans 656519 0 0 1 2 482 21 Halothermothrix genus 32636 0 31909 Halothermothrix orenii species 1 461 0 1 141 84109 186802 Clostridiales 213 order 0 family 990719 1 93 0 genus 990721 93 1 0 Christensenella massiliensis species 1805714 93 1 0 1 1199 10 12 Ruminococcaceae family 541000 169 2 946234 genus 6 Flavonifractor 0 1 0 1 163 292800 species Flavonifractor plautii 0 1 96 2305133 no rank 1 96 1572656 Ruminococcaceae bacterium CPB6 species 0 0 genus 253238 176 1 1 176 Ethanoligenens harbinense species 253239 0 0 1263 genus 2 408 1 191 species Ruminococcus bicirculans 1160721 0 0 1 217 1264 Ruminococcus albus species 193 2 216851 genus 1 Faecalibacterium 0 1 853 species Faecalibacterium prausnitzii 192 1 0 0 145 1 552397 no rank 0 145 1 29343 [Clostridium] cellulosi species 1 0 186804 Peptostreptococcaceae 5 family 8 6013 44259 genus 1 327 0 0 Filifactor alocis species 143361 1 327 0 1 1424 genus 1849828 1 1424 1505 Paeniclostridium sordellii species 0 0 1 771 186831 genus 0 1511 Acetoanaerobium sticklandii species 1 771 0 193 1 genus 1481960 0 species Peptoclostridium acidaminophilum 1731 193 1 0 1411023 no rank 468 1 0 1 468 2081703 species Peptostreptococcaceae bacterium oral taxon 929 1 0 1 genus Clostridioides 1870884 2825 2 species Clostridioides difficile 1496 2824 1 0 Eubacteriaceae 5 family 186806 4 912 1 0 1730 Eubacterium 8 genus 2 477 1 0 0 1 469 species Eubacterium limosum 1736 33951 genus 1 430 0 0 1 430 33952 Acetobacterium woodii species 0 3166 10 2304686 family 0 2304691 genus 1 216 1 216 [Clostridium] stercorarium species 1510 0 0 236752 genus 1 405 0 236753 Fastidiosipila sanguinis species 405 1 1 88 2305130 no rank 0 0 88 1 Ruminiclostridium sp. KB18 species 1834198 0 genus 2304692 3 1617 Herbivorax saccincola species 1677857 621 1 0 0 Ruminiclostridium thermocellum species 1515 1 414 0 species [Clostridium] clariflavum 288965 582 1 Ruminiclostridium 15 genus 1508657 461 2 1 0 0 1521 [Clostridium] cellulolyticum species 1 446 genus 1637257 114 1 0 114 1 884684 Mageeibacillus indolicus species 0 0 2304693 genus 1 265 species [Clostridium] thermosuccinogenes 84032 1 265 0 49 Clostridiaceae family 31979 40 59055 1 0 2 600 genus 2 Geosporobacter 390805 0 1 598 1 1424294 Geosporobacter ferrireducens species 0 0 1 2449 4 Candidatus Arthromitus 42 genus 49082 0 no rank 2638829 3 2407 0 789 1 49118 species Candidatus Arthromitus sp. SFB-mouse 0 814 1 1508644 species Candidatus Arthromitus sp. SFB-mouse-NL 0 1041504 species Candidatus Arthromitus sp. SFB-rat-Yit 1 804 30 54791 1485 314 genus Clostridium 0 1 1259 1 species Clostridium chauvoei 46867 0 1 2656 1501 species Clostridium pasteurianum 0 0 Clostridium saccharoperbutylacetonicum species 36745 1 2357 217159 Clostridium carboxidivorans species 1664 1 0 0 1 1542 Clostridium kluyveri species 1534 0 Clostridium perfringens species 1502 2834 1 1 2009 169679 species Clostridium saccharobutylicum 0 1538 species Clostridium ljungdahlii 1 1183 0 0 1 1450 238834 Clostridium estertheticum species 1216932 species Clostridium bornimense 1587 1 0 0 species Clostridium novyi 1542 1 1170 2179 1 1492 species Clostridium butyricum 0 0 1254 1 species Clostridium acetobutylicum 1488 1 1410 Clostridium taeniosporum species 394958 0 0 1 3012 Clostridium beijerinckii species 1520 0 1 1111 84023 Clostridium autoethanogenum species 1 803 species Clostridium aceticum 84022 0 0 2337 1 1561 Clostridium baratii species 0 1548 species Clostridium scatologenes 1 1824 0 1509 species Clostridium sporogenes 1358 1 11497 1 Clostridium botulinum species 1491 0 29341 species Clostridium argentinense 1 1458 0 1494 species Clostridium cochlearium 1 1181 0 0 609 2 2614128 no rank 0 species Clostridium sp. BNL1100 755731 1 514 95 1 1042156 species Clostridium sp. SY8519 0 0 species Clostridium cellulovorans 1493 1 1286 1 900 species Clostridium formicaceticum 1497 0 1513 species Clostridium tetani 1553 1 0 1519 Clostridium tyrobutyricum species 1 994 0 0 1 1166 3 2 Alkaliphilus genus 114627 0 208226 Alkaliphilus metalliredigens species 1 729 0 461876 Alkaliphilus oremlandii species 1 435 0 1 2 169 5 Heliobacteriaceae family 31984 0 genus 2697 1 164 0 164 1 species Heliobacterium modesticaldum 35701 1 0 Peptococcaceae 24 family 186807 4963 25 0 1 5 976 10 genus Desulfitobacterium 36853 0 Desulfitobacterium hafniense species 49338 258 1 0 1 227 142877 species Desulfitobacterium metallireducens Desulfitobacterium dichloroeliminans species 233055 1 256 0 225 1 36854 species Desulfitobacterium dehalogenans 0 2282742 genus 1 364 0 0 Desulfotomaculum acetoxidans species 58138 1 364 197 1 genus 51196 0 51197 Syntrophobotulus glycolicus species 1 197 0 0 1 147 2 471826 2 Candidatus Desulforudis genus 1 145 Candidatus Desulforudis audaxviator species 471827 0 0 genus 2282740 1 291 291 1 102134 species Desulfotomaculum gibsoniae 0 0 79206 genus 3 1136 0 1563 species Desulfosporosinus orientis 398 1 376 1 79209 species Desulfosporosinus meridiei 0 0 885581 species Desulfosporosinus acidiphilus 362 1 0 1 302 51514 genus 0 1 302 species Dehalobacterium formicoaceticum 51515 1562 11 genus Desulfotomaculum 5 918 1 0 Desulfotomaculum nigrificans species 1565 186 1 0 1 210 1564 Desulfotomaculum ruminis species 0 Desulfotomaculum ferrireducens species 1833852 1 211 0 Desulfotomaculum reducens species 59610 1 300 0 1 159 278993 genus 0 0 159 1 863643 Thermincola potens species 0 1 4 449 56112 Dehalobacter 3 genus 2635733 no rank 2 320 0 1 159 species Dehalobacter sp. DCA 1147129 0 0 1131462 Dehalobacter sp. CF species 161 1 0 species Dehalobacter restrictus 55583 126 1 3 Symbiobacteriaceae family 543349 2 269 1 0 0 genus 2733 266 1 0 2734 species Symbiobacterium thermophilum 1 266 0 1 311 5 68298 4 family Syntrophomonadaceae 129001 Syntrophothermus 2 genus 2 92 1 0 86170 Syntrophothermus lipocalidus species 90 1 0 1 0 Syntrophomonas 2 genus 862 2 215 0 863 species Syntrophomonas wolfei 1 213 538999 no rank 9 1001 0 1 147 2717089 genus 0 0 1 147 2086584 Mordavella sp. Marseille-P3756 species 1 0 1 family Clostridiales Family XIII. Incertae Sedis 543314 484 3 species [Eubacterium] sulci 143393 243 1 0 0 86331 genus 1 240 species Mogibacterium diversum 114527 240 1 0 family 2 Clostridiales Family XVII. Incertae Sedis 539000 3 227 1 0 6 genus Thermaerobacter 73918 2 225 1 0 0 Thermaerobacter marianensis species 73919 1 219 1 0 1 genus Intestinimonas 1392389 143 2 0 142 1 Intestinimonas butyriciproducens species 1297617 186803 family 8 Lachnospiraceae 6609 23 1 0 0 2719313 genus 1 172 208479 species [Clostridium] bolteae 1 172 0 0 1 424 2 genus 1 Anaerostipes 207244 0 649756 species Anaerostipes hadrus 423 1 0 no rank 186928 432 2 0 269 1 39491 [Eubacterium] rectale species 163 1 712991 Lachnospiraceae bacterium oral taxon 500 species 0 224 1 2719231 genus 0 species [Clostridium] saccharolyticum 84030 1 224 0 0 28050 genus 486 1 0 1 486 39485 species [Eubacterium] eligens 0 1663717 genus 1 414 species Herbinix luporum 1679721 1 414 0 124 2 genus 3 Roseburia 841 0 1 1 121 Roseburia hominis species 301301 0 genus 698776 1 1208 0 1208 1 29360 species Cellulosilyticum lentocellum 0 1506553 7 genus Lachnoclostridium 4 1003 1 0 1871021 Lachnoclostridium phocaeense species 152 1 0 2608895 no rank 1 187 0 187 1 1834196 species Lachnoclostridium sp. YL32 0 0 66219 Lachnoclostridium phytofermentans species 657 1 2 751 830 genus 0 1 419 43305 Butyrivibrio proteoclasticus species 0 Butyrivibrio hungatei species 185008 1 332 0 genus 2569097 1 573 0 39488 species [Eubacterium] hallii 573 1 0 1 0 572511 1 genus Blautia 3 500 no rank 2648079 187 1 0 187 1 1796616 species Blautia sp. YL58 0 0 1322 Blautia hansenii species 312 1 2039240 genus 1 290 0 1 290 Anaerotignum propionicum species 28446 0 0 1 136 216572 family 0 459786 genus 1 136 136 1 species Oscillibacter valericigenes 351091 0 0 720 1 84086 no rank 0 endosymbiont 'TC1' of Trimyema compressum species 243899 1 720 159061 425 Bacilli 139 class 91061 0 1 0 1 110068 262 1385 214 order Bacillales family 186821 163 1 0 0 663587 no rank 163 1 0 85683 species [Bacillus] selenitireducens 1 163 186822 20 Paenibacillaceae family 46 12464 1 0 1 0 55080 genus 7 Brevibacillus 4 1378 species Brevibacillus laterosporus 1465 1 757 0 Brevibacillus brevis species 1393 1 384 0 230 1 54913 species Brevibacillus formosus 0 36 10351 44249 genus 121 Paenibacillus 0 1 1 226 Paenibacillus xylanexedens species 528191 0 1126833 Paenibacillus beijingensis species 1 183 0 371 1 189426 Paenibacillus odorifer species 0 1 163 species Paenibacillus yonginensis 1462996 0 0 1870820 species Paenibacillus ihbetae 181 1 species group 2044880 203 1 0 483937 Paenibacillus riograndensis species 1 203 0 185978 no rank 3576 13 0 0 1 192 Paenibacillus sp. 32O-W species 1695218 1536769 Paenibacillus sp. FSL P4-0081 species 319 1 0 0 1 173 324057 species Paenibacillus sp. JDR-2 species Paenibacillus sp. FSL R5-0345 1536770 492 1 0 1536772 Paenibacillus sp. FSL R7-0273 species 187 1 0 1 213 2069255 species Paenibacillus sp. lzh-N1 0 0 238 1 1536774 species Paenibacillus sp. FSL H7-0357 species Paenibacillus sp. FSL H7-0737 1536775 1 329 0 481743 Paenibacillus sp. Y412MC10 species 164 1 0 1 209 1536771 species Paenibacillus sp. FSL R5-0912 0 0 1 236 1870819 species Paenibacillus sp. BIHB4019 0 1566358 Paenibacillus sp. IHBB 10380 species 648 1 0 Paenibacillus sp. FSL R7-0331 species 1536773 176 1 0 species Paenibacillus sabinae 365617 145 1 0 1244 1 species Paenibacillus polymyxa 1406 0 190 1 1178515 Paenibacillus swuensis species 0 1 407 1763538 Paenibacillus crassostreae species 0 135 1 species Paenibacillus naphthalenovorans 162209 0 169760 Paenibacillus stellifer species 170 1 1 221 Paenibacillus borealis species 160799 0 0 species Paenibacillus graminis 189425 1 266 1616788 Paenibacillus bovis species 275 1 0 0 species Paenibacillus kribbensis 172713 225 1 0 Paenibacillus donghaensis species 414771 1 557 390 1 Paenibacillus mucilaginosus species 61624 0 44251 species Paenibacillus durus 1 350 0 0 59893 Paenibacillus peoriae species 1 223 1464 species Paenibacillus larvae 1 342 0 species Paenibacillus terrae 159743 187 1 0 1 0 genus 1 Thermobacillus 76632 2 227 0 377615 species Thermobacillus composti 1 226 3 488 no rank 85151 0 55079 1 genus Aneurinibacillus 3 488 1 0 0 1500254 Aneurinibacillus soli species 244 1 0 243 1 2642329 no rank 0 243 1 1450761 species Aneurinibacillus sp. XH2 100 Bacillaceae family 186817 57218 117 1 0 0 genus 351195 1 170 0 1 170 Salimicrobium jeotgali species 1230341 0 1 2 1255 genus 1 Oceanobacillus 182709 0 1254 1 species Oceanobacillus iheyensis 182710 0 1 36174 58 1386 683 Bacillus genus 79881 species Bacillus gibsonii 97 1 0 670 1 561879 species Bacillus safensis 0 0 1 143 Bacillus beveridgei species 632773 0 282 1 species Bacillus glycinifermentans 1664069 1 525 412384 species Bacillus aryabhattai 0 1479 Bacillus smithii species 1 293 0 0 1 320 1792192 species group Bacillus altitudinis species 293387 1 320 0 1407 1 1408 Bacillus pumilus species 0 1 234 324767 species Bacillus infantis 0 0 Bacillus coagulans species 1398 391 1 0 species group 653685 9 3994 0 292 1 1402 Bacillus licheniformis species 0 119858 Bacillus sonorensis species 238 1 0 species subgroup 1938374 1144 3 0 Bacillus velezensis species 492670 555 1 506 1 1390 species Bacillus amyloliquefaciens 0 1 83 659243 Bacillus siamensis species 0 1539 1 1423 Bacillus subtilis species 0 0 72361 species Bacillus vallismortis 53 1 1648923 Bacillus paralicheniformis species 1 219 0 0 Bacillus atrophaeus species 1452 509 1 0 Bacillus megaterium species 1404 1 1749 86661 species group 17109 10 0 Bacillus anthracis species 1392 553 1 0 Bacillus mycoides species 1405 1 2005 0 no rank 2750818 3 1441 0 species Bacillus sp. FDAARGOS_235 1839798 1 636 0 0 species Bacillus sp. ABP14 1892404 1 346 Bacillus sp. HBCD-sjtu species 2053832 459 1 0 6171 1 Bacillus cereus species 1396 0 0 1 479 155322 species Bacillus toyonensis 0 1 543 580165 species Bacillus cytotoxicus 0 5386 1 1428 Bacillus thuringiensis species 1 531 658666 species Bacillus bombysepticus 0 135735 Bacillus endophyticus species 908 1 0 0 1547283 species Bacillus weihaiensis 685 1 79883 species Bacillus horikoshii 1 379 0 0 species Bacillus xiamenensis 1178537 286 1 1 665 species Bacillus cellulosilyticus 1413 0 1 560 1471 Bacillus methanolicus species 0 86664 species Bacillus flexus 630 1 0 0 1 840 species Bacillus cohnii 33932 0 185979 no rank 3324 19 species Bacillus sp. X1(2014) 1565991 511 1 0 1 98 species Bacillus sp. JS 1127744 0 1409 species Bacillus sp. (in: Bacteria) 1 55 0 0 563169 Bacillus sp. SJ-10 species 71 1 1 152 98228 species Bacillus sp. OxB-1 0 0 148 1 2026248 species Bacillus sp. 1s-1 0 1 194 1837130 species Bacillus sp. FJAT-14266 0 1 47 1628753 Bacillus sp. LM 4-2 species 666686 species Bacillus sp. 1NLA3E 631 1 0 38 1 2049935 species Bacillus sp. Lzh-5 0 0 1 482 1827146 species Bacillus sp. IHB B 7164 1 34 species Bacillus sp. BH072 1570330 0 0 80 1 1446792 Bacillus sp. Pc3 species 84 1 species Bacillus sp. 275 1941347 0 1 148 species Bacillus sp. H15-1 1856406 0 species Bacillus sp. WP8 756828 291 1 0 0 1774743 species Bacillus sp. SDLI1 87 1 71 1 1574141 species Bacillus sp. YP1 0 1 102 species Bacillus sp. MD-5 2009331 0 175304 genus 250 1 0 0 1472767 species Lentibacillus amyloliquefaciens 250 1 5 2456 genus 2675234 0 0 Bacillus krulwichiae species 199441 1 644 79885 species Bacillus pseudofirmus 433 1 0 0 530 1 Bacillus clausii species 79880 species Bacillus halodurans 86665 1 268 0 0 species Bacillus lehensis 300825 581 1 1920 6 150247 34 Anoxybacillus genus 0 1 0 342 1 294699 Anoxybacillus amylolyticus species 0 569 1 species Anoxybacillus flavithermus 33934 2639704 no rank 645 2 0 Anoxybacillus sp. B7M1 species 1490057 1 325 0 1 320 species Anoxybacillus sp. B2M1 1490052 0 330 1 Anoxybacillus gonensis species 198467 0 0 1 7 3554 84406 genus 14 Virgibacillus 0 1 547 1482 Virgibacillus halodenitrificans species 0 2017483 Virgibacillus phasianinus species 527 1 2 1215 2620237 no rank 0 Virgibacillus sp. SK37 species 403957 512 1 0 1 703 1911587 species Virgibacillus sp. 6R 0 1 610 163877 species Virgibacillus necropolis 0 0 1 641 1473 species Virgibacillus pantothenticus 1 0 genus 5 Halobacillus 45667 636 3 0 1 269 1570 species Halobacillus halophilus 0 Halobacillus mangrovi species 402384 362 1 2 1282 genus 2675230 0 0 665099 Bacillus oceanisediminis species 1 455 Bacillus kochii species 859143 1 827 0 genus 2675229 2 1225 0 0 Bacillus muralis species 264697 252 1 1 973 species Bacillus simplex 1478 0 1 0 129337 genus 103 Geobacillus 2490 15 0 Geobacillus genomosp. 3 species 1921421 130 1 0 665 4 1505648 species group Geobacillus thermocatenulatus species 33938 128 1 0 0 326 1 species Geobacillus thermoleovorans 33941 species Geobacillus kaustophilus 1462 111 1 0 1 100 169283 Geobacillus lituanicus species 0 0 1 191 1422 Geobacillus stearothermophilus species 0 2642459 no rank 1057 6 0 581103 Geobacillus sp. Y4.1MC1 species 1 279 544556 Geobacillus sp. Y412MC61 species 78 1 0 0 471223 species Geobacillus sp. WCH70 409 1 0 70 1 550542 Geobacillus sp. Y412MC52 species 0 691437 Geobacillus sp. C56-T3 species 1 142 0 Geobacillus sp. GHH01 species 1233873 1 79 129338 Geobacillus subterraneus species 1 118 0 Geobacillus thermodenitrificans species 33940 1 226 0 28 Lysinibacillus genus 400634 3384 5 1 0 1 524 Lysinibacillus varians species 1145276 0 1 586 species Lysinibacillus fusiformis 28031 0 0 642 1 no rank 2636778 0 1 642 2072025 Lysinibacillus sp. YS11 species 1604 1 1421 species Lysinibacillus sphaericus 0 0 461 1 1055323 genus 33936 species Aeribacillus pallidus 461 1 0 0 1 3 737 Fictibacillus 1 genus 1329200 353 1 255247 species Fictibacillus arsenicus 0 0 1221500 Fictibacillus phosphorivorans species 383 1 0 1 371 1906945 genus 0 1426 Parageobacillus thermoglucosidasius species 371 1 459532 Terribacillus 1 genus 2 240 1 0 0 1 239 Terribacillus aidingensis species 586416 513 2 2 Amphibacillus genus 29331 0 1 0 1 511 1449 Amphibacillus xylanus species 186818 family 19 Planococcaceae 7530 27 1 0 366 2 157226 4 Jeotgalibacillus genus 0 1 species Jeotgalibacillus malaysiensis 1508404 362 1 0 1 0 Sporosarcina 14 genus 1569 5 1723 no rank 2647733 2 390 0 0 1 200 1930764 Sporosarcina sp. P33 species 1 190 1930546 species Sporosarcina sp. P37 0 0 Sporosarcina ureae species 1571 854 1 1 465 1476 Sporosarcina psychrophila species 0 0 1 3 964 genus 10 Solibacillus 648800 0 76853 species Solibacillus silvestris 1 473 2637870 no rank 1 481 0 Solibacillus sp. R5-41 species 2048654 1 481 0 2 476 1649 3 genus Kurthia 0 1 0 2644826 no rank 473 1 0 1750719 Kurthia sp. 11kri321 species 1 473 0 1 12 3492 1372 genus 33 Planococcus 0 161360 Planococcus antarcticus species 243 1 453 1 species Planococcus sp. L10.15 1302659 0 414778 Planococcus donghaensis species 1 405 0 0 400 1 1374 Planococcus kocurii species species Planococcus plakortidis 1038856 74 1 0 1 130 Planococcus rifietoensis species 200991 0 0 438 1 species Planococcus faecalis 1598147 Planococcus maritimus species 192421 297 1 0 2662419 no rank 606 2 0 0 1526927 species Planococcus sp. PAMC 21323 1 416 0 2058136 species Planococcus sp. MB-3u-03 190 1 0 413 1 1215089 species Planococcus halocryophilus Rummeliibacillus 2 genus 648802 490 2 1 0 1 488 241244 Rummeliibacillus stabekisii species 0 0 1 9 3745 family 4 Listeriaceae 186820 0 1 6 3302 1637 61 Listeria genus 0 1642 Listeria innocua species 439 1 382 1 species Listeria seeligeri 1640 0 684 1 1638 species Listeria ivanovii 0 0 510 1 Listeria welshimeri species 1643 0 1226 1 species Listeria monocytogenes 1639 0 1 2 439 2755 genus 4 Brochothrix 0 435 1 species Brochothrix thermosphacta 2756 0 1 26351 41 28 family Staphylococcaceae 90964 0 genus 45669 1 160 1 160 Salinicoccus halodurans species 407035 0 1 0 69965 genus 4 Macrococcus 4 1217 0 1 526 2619255 no rank 1 526 species Macrococcus sp. IME1552 1898474 0 0 1855823 Macrococcus canis species 273 1 0 414 1 species Macrococcus caseolyticus 69966 1279 197 Staphylococcus genus 33 24512 1 0 1 385 Staphylococcus hyicus species 1284 0 607 1 species Staphylococcus condimenti 70255 0 1 416 Staphylococcus felis species 46127 0 0 species Staphylococcus muscae 1294 254 1 0 589 1 29385 Staphylococcus saprophyticus species 595 1 species Staphylococcus cohnii 29382 0 1 700 1290 species Staphylococcus hominis 0 0 1 365 70258 species Staphylococcus piscifermentans Staphylococcus kloosii species 29384 582 1 0 0 746 1 1283 species Staphylococcus haemolyticus 0 308354 Staphylococcus simiae species 693 1 0 1 567 species Staphylococcus succinus 61015 430 1 1295 Staphylococcus schleiferi species 0 0 1 934 species Staphylococcus equorum 246432 0 2187 1 species Staphylococcus aureus 1280 0 793 1 species Staphylococcus sciuri 1296 592 1 214473 Staphylococcus nepalensis species 0 0 1288 species Staphylococcus xylosus 1138 1 1292 Staphylococcus warneri species 575 1 0 0 91994 no rank 1 572 species Staphylococcus sp. AntiMn-1 1715860 572 1 0 699 1 985002 species Staphylococcus argenteus 0 0 3375 1 283734 Staphylococcus pseudintermedius species 0 Staphylococcus lugdunensis species 28035 1 594 0 1 1546 species Staphylococcus pasteuri 45972 1281 species Staphylococcus carnosus 1 458 0 0 species Staphylococcus capitis 29388 649 1 0 387 1 species Staphylococcus lutrae 155085 0 1 395 1286 Staphylococcus simulans species 0 368 1 985762 species Staphylococcus agnetis 0 species Staphylococcus pettenkoferi 170573 242 1 0 643214 species Staphylococcus stepanovicii 722 1 1160 1 species Staphylococcus epidermidis 1282 0 0 1 434 2 2005363 Auricoccucs 4 genus 0 430 1 species Auricoccus indicus 1849491 0 119 2 family 186824 0 292635 Laceyella genus 1 1 1677050 genus 1 118 0 118 1 1471761 Novibacillus thermophilus species 0 539002 no rank 1317 9 0 0 no rank 539738 2 509 1 0 2 genus Gemella 1378 2 509 0 507 1 no rank 2624949 0 507 1 1785995 species Gemella sp. oral taxon 928 808 7 no rank 539742 0 1 0 15 Exiguobacterium genus 33986 7 808 1 127 332410 species Exiguobacterium sibiricum 0 0 520 4 2644629 no rank 0 117 1 1399115 Exiguobacterium sp. MH3 species Exiguobacterium sp. AT1b species 360911 94 1 0 Exiguobacterium sp. ZWU0009 species 1224749 151 1 0 0 species Exiguobacterium sp. U13-1 1849031 1 158 0 1 146 132920 Exiguobacterium antarcticum species 947 9 10 family Alicyclobacillaceae 186823 0 1 29330 1 genus Alicyclobacillus 223 2 1 0 Alicyclobacillus acidocaldarius species 405212 1 222 0 0 1 3 344 7 genus Tumebacillus 432330 0 1903704 Tumebacillus avium species 214 1 0 123 1 1214604 Tumebacillus algifaecis species Kyrpidia 2 genus 1129704 3 370 1 0 0 Kyrpidia sp. EA-1 species 2055160 199 1 0 169 1 33943 Kyrpidia tusciae species 0 1 48854 162 Lactobacillales 146 order 186826 0 1 49 15686 11 Streptococcaceae family 1300 145 Streptococcus genus 1301 43 12684 1 0 0 1 109 species Streptococcus himalayensis 1888195 1 148 Streptococcus halotolerans species 1814128 0 448 1 1309 species Streptococcus mutans 0 799 1 1307 species Streptococcus suis 0 Streptococcus iniae species 1346 279 1 0 0 1 349 Streptococcus parauberis species 1348 0 315405 Streptococcus gallolyticus species 1 468 species group 671232 3 1173 0 0 207 1 76860 species Streptococcus constellatus 0 Streptococcus intermedius species 1338 1 458 508 1 Streptococcus anginosus species 1328 0 0 199 1 197614 species Streptococcus pasteurianus 0 species Streptococcus infantarius 102684 394 1 238 1 species Streptococcus macedonicus 59310 0 0 Streptococcus acidominimus species 1326 162 1 0 1 182 species Streptococcus marmotae 1825069 505 1 1302 Streptococcus gordonii species 0 126 1 1305 Streptococcus sanguinis species 0 1 201 1811193 species Streptococcus pantholopis 0 0 species Streptococcus salivarius 1304 529 1 0 189 1 species Streptococcus pluranimalium 82348 0 676 2 species group 119603 0 Streptococcus dysgalactiae species 1334 260 1 0 1 416 1336 Streptococcus equi species 1 189 1335 species Streptococcus equinus 0 2608887 no rank 7 1116 0 1156433 species Streptococcus sp. I-P16 1 112 0 128 1 1156431 Streptococcus sp. I-G2 species 0 0 1 125 712633 species Streptococcus sp. oral taxon 431 0 Streptococcus sp. NPS 308 species 1902136 123 1 1 115 1759399 species Streptococcus sp. A12 0 0 344 1 1319 species Streptococcus sp. 'group B' Streptococcus sp. FDAARGOS_192 species 1839799 169 1 0 0 1311 Streptococcus agalactiae species 1 654 0 Streptococcus lutetiensis species 150055 223 1 1 451 species Streptococcus oralis 1303 0 0 420 1 Streptococcus mitis species 28037 0 190 1 Streptococcus merionis species 400065 342 1 1349 species Streptococcus uberis 0 0 1 184 1318 species Streptococcus parasanguinis 45634 Streptococcus cristatus species 1 118 0 1313 species Streptococcus pneumoniae 1 436 0 1 353 species Streptococcus thermophilus 1308 0 0 257758 species Streptococcus pseudopneumoniae 141 1 0 1314 species Streptococcus pyogenes 1 548 0 1 2991 5 1357 11 genus Lactococcus 317 1 species Lactococcus piscium 1364 0 1 1995 1358 Lactococcus lactis species 0 0 1 186 1366 Lactococcus raffinolactis species 1363 species Lactococcus garvieae 482 1 0 0 1 3970 17 Leuconostocaceae 3 family 81850 1 0 46255 9 genus Weissella 1244 6 0 Weissella jogaejeotgali species 1631871 312 1 0 165 1 137591 species Weissella cibaria 0 1 284 species Weissella paramesenteroides 1249 0 271 1 165096 Weissella koreensis species 1 203 species Weissella ceti 759620 0 1 0 1243 25 Leuconostoc genus 2397 9 0 136609 species Leuconostoc kimchii 250 1 0 33964 Leuconostoc citreum species 225 1 0 255248 Leuconostoc garlicum species 109 1 1 335 species Leuconostoc carnosum 1252 0 0 no rank 2685106 204 1 979982 Leuconostoc sp. C2 species 204 1 0 101 1 species Leuconostoc lactis 1246 0 0 1245 species Leuconostoc mesenteroides 590 1 1244 Leuconostoc gelidum species 558 1 0 genus 46254 326 1 0 1 326 1247 species Oenococcus oeni 0 0 no rank 263855 1 378 0 species Lactobacillales bacterium 1993866 1 378 19 6380 5 Enterococcaceae family 81852 0 1 1 0 52 genus Enterococcus 1350 4258 12 0 Enterococcus faecium species 1352 751 1 1351 Enterococcus faecalis species 721 1 0 Enterococcus casseliflavus species 37734 236 1 0 0 53346 species Enterococcus mundtii 1 355 no rank 2608891 612 3 0 0 Enterococcus sp. CR-Ec1 species 2057791 1 203 species Enterococcus sp. FDAARGOS_375 2060307 218 1 0 0 1 191 2060306 Enterococcus sp. FDAARGOS_163 species 0 417368 Enterococcus thailandicus species 1 398 53345 species Enterococcus durans 389 1 0 1 366 Enterococcus hirae species 1354 0 0 378 1 Enterococcus wangshanyuanii species 2005703 0 1 2 671 3 genus Melissococcus 33969 33970 Melissococcus plutonius species 1 668 0 0 1 3 920 5 genus Vagococcus 2737 species Vagococcus teuberi 519472 1 477 0 1 438 Vagococcus penaei species 633807 0 526 1 51668 genus 0 0 1 526 species Tetragenococcus halophilus 51669 1 0 186827 2 Aerococcaceae family 1297 8 1 0 1375 Aerococcus 10 genus 1295 7 128944 Aerococcus urinaehominis species 1 160 0 0 278 1 51665 species Aerococcus urinaeequi 0 Aerococcus viridans species 1377 1 203 species Aerococcus urinae 1376 1 264 0 species Aerococcus christensenii 87541 1 245 0 0 119206 species Aerococcus sanguinicola 1 135 17475 58 28 family Lactobacillaceae 33958 0 1 245 1 2767877 genus 0 0 148814 Lactobacillus kunkeei species 245 1 1 0 1578 120 Lactobacillus genus 16 5558 0 1 587 1587 species Lactobacillus helveticus 109790 Lactobacillus jensenii species 325 1 0 species Lactobacillus acetotolerans 1600 250 1 0 0 species Lactobacillus kefiranofaciens 267818 1 233 0 973 4 no rank 2620435 0 2099788 Lactobacillus sp. CBA3605 species 204 1 0 172 1 2108362 species Lactobacillus sp. D1501 0 2099789 Lactobacillus sp. CBA3606 species 167 1 0 1 430 species Lactobacillus sp. wkB8 1545702 743 1 Lactobacillus gasseri species 1596 0 33959 Lactobacillus johnsonii species 1 751 0 0 371 1 species Lactobacillus delbrueckii 1584 0 177 1 species Lactobacillus amylolyticus 83683 0 1604 Lactobacillus amylovorus species 1 372 species Lactobacillus gallinarum 52242 1 301 0 355 1 1579 Lactobacillus acidophilus species 0 2767892 genus 1 176 0 240427 Lactobacillus paracollinoides species 1 176 0 0 genus 2767876 146 1 0 1603 species Lactobacillus amylophilus 1 146 1601 4 genus 2767887 0 Lactobacillus ruminis species 1623 1 113 0 0 1624 species Lactobacillus salivarius 1083 1 1 238 89059 Lactobacillus acidipiscis species 0 0 1601 species Lactobacillus agilis 1 167 2767885 genus 600 2 0 1599 species Lactobacillus sakei 350 1 0 0 1 250 Lactobacillus curvatus species 28038 0 3 321 genus 2767886 0 1580 Lactobacillus brevis species 1 168 60 1 Lactobacillus zymae species 267363 0 0 93 1 637971 Lactobacillus koreensis species 0 572 3 2767893 genus 163 1 152331 Lactobacillus parabuchneri species 0 0 232 1 species Lactobacillus curieae 1138822 species Lactobacillus buchneri 1581 1 177 0 303 1 2767890 genus 0 1193095 species Lactobacillus hokkaidonensis 1 303 0 0 2759736 genus 3 887 47715 species Lactobacillus rhamnosus 1 257 0 0 Lactobacillus paracasei species 1597 278 1 0 1 352 1582 species Lactobacillus casei genus 2767889 2 517 0 0 375175 Lactobacillus backii species 273 1 0 1 244 Lactobacillus coryniformis species 1610 0 1018 3 2742598 genus Lactobacillus fermentum species 1613 142 1 0 0 Lactobacillus reuteri species 1598 1 698 178 1 species Lactobacillus mucosae 97478 0 0 2112 6 2767879 genus 0 Lactobacillus alimentarius species 1602 344 1 396 1 1847728 species Lactobacillus allii 0 0 1 362 1007676 species Lactobacillus ginsenosidimutans 1 325 1612 Lactobacillus farciminis species 0 1074467 species Lactobacillus heilongjiangensis 1 261 0 0 1 424 392416 species Lactobacillus crustorum 0 1 1551 6 1253 genus 10 Pediococcus 51663 Pediococcus damnosus species 301 1 0 1 170 1670797 species group 0 0 170 1 1254 species Pediococcus acidilactici 256 1 114090 species Pediococcus inopinatus 0 Pediococcus claussenii species 187452 356 1 0 species Pediococcus pentosaceus 1255 1 458 0 0 2767842 genus 1053 3 species Lactobacillus plantarum 1590 1 750 0 155 1 Lactobacillus paraplantarum species 60520 0 0 148 1 Lactobacillus pentosus species 1589 2767881 genus 787 2 0 0 Lactobacillus sanfranciscensis species 1625 337 1 Lactobacillus lindneri species 53444 1 450 0 0 1 9 3522 12 family Carnobacteriaceae 186828 0 genus 191769 672 1 no rank 2632303 1 672 0 0 1 672 1911586 Marinilactibacillus sp. 15R species 2102 5 genus 8 Carnobacterium 2747 0 1 0 147709 species Carnobacterium inhibens 499 1 798 2 257487 no rank 0 0 Carnobacterium sp. CP1 species 1564681 1 299 0 499 1 208596 species Carnobacterium sp. 17-4 797 1 2751 Carnobacterium maltaromaticum species 0 0 736 2 1470540 genus 708126 species Jeotgalibaca dankookensis 1 356 0 2621505 no rank 1 380 0 0 380 1 1903686 Jeotgalibaca sp. PTS2502 species 1737404 class 15 Tissierellia 17 4369 1 0 2 398 no rank 1737407 0 0 1 398 2 1582879 3 Ezakiella genus species Ezakiella massiliensis 1852374 395 1 0 1 0 1737405 27 order Tissierellales 14 3956 2042895 5 family Gottschalkiaceae 942 3 1 0 2 937 1505664 1 Gottschalkia genus 0 1 1556 Gottschalkia acidurici species 1 936 0 0 1 10 2987 family 3 Peptoniphilaceae 1570339 2 713 genus 3 Finegoldia 150022 0 1 0 1 710 1260 Finegoldia magna species genus 1161127 109 1 0 1852373 species Murdochiella vaginalis 1 109 0 543311 genus 868 1 0 0 1 868 Parvimonas micra species 33033 1 0 5 Peptoniphilus genus 162289 451 2 no rank 2637196 1 446 0 0 1912856 species Peptoniphilus sp. ING2-D1G 446 1 3 843 4 Anaerococcus genus 165779 0 1 1 425 species Anaerococcus prevotii 33034 0 0 1870984 species Anaerococcus mediterraneensis 414 1 1676648 3 Limnochordia class 4 206 1 0 order 5 Limnochordales 1676649 203 3 1 0 198 2 family 1676650 0 Limnochorda 14 genus 1676651 198 2 1 0 0 1555112 species Limnochorda pilosa 184 1 1433 8 class 526524 0 8 1433 10 Erysipelotrichales order 526525 0 1 1 0 128827 5 Erysipelotrichaceae family 7 1423 1647 2 Erysipelothrix genus 677 3 1 0 0 1514105 species Erysipelothrix larvae 321 1 0 Erysipelothrix rhusiopathiae species 1648 354 1 0 191303 genus 1 450 1 450 no rank 2638206 0 Turicibacter sp. H121 species 1712675 450 1 0 0 199 1 544447 no rank 0 species Erysipelotrichaceae bacterium I46 1834207 199 1 0 genus 1729679 92 1 92 1 1702221 species Faecalibaculum rodentium 0 28 4059 909932 16 class Negativicutes 0 1 909929 order 6 Selenomonadales 14 2674 1 0 0 1 1327 4 family 1 Sporomusaceae 1843490 0 1 3 1326 3 Pelosinus genus 365348 0 Pelosinus fermentans species 365349 1 613 0 no rank 2629460 1 710 0 Pelosinus sp. UFO1 species 484770 1 710 1341 9 1843491 family 1 Selenomonadaceae 0 1 747 6 970 genus 23 Selenomonas 0 1 0 69823 Selenomonas sputigena species 166 1 Selenomonas ruminantium species 971 1 184 0 0 no rank 2637378 3 374 712538 Selenomonas sp. oral taxon 478 species 1 132 0 0 1884263 Selenomonas sp. oral taxon 920 species 1 107 713030 species Selenomonas sp. oral taxon 136 1 135 0 1 Megamonas genus 158846 593 2 1 0 158847 species Megamonas hypermegale 1 592 0 7 Veillonellales order 1843489 9 1180 1 0 1 0 12 Veillonellaceae family 31977 8 1173 1 0 2 Dialister genus 39948 2 348 346 1 39950 Dialister pneumosintes species 0 0 1 559 3 3 genus Veillonella 29465 0 29466 Veillonella parvula species 421 1 0 135 1 Veillonella rodentium species 248315 0 1 84 genus 909928 0 1 84 species Negativicoccus massiliensis 1702287 0 1 170 906 genus 0 907 Megasphaera elsdenii species 170 1 2 Acidaminococcales order 1843488 4 189 1 0 0 1 187 3 Acidaminococcaceae 8 family 909930 0 2 179 genus 904 1 100 Acidaminococcus fermentans species 905 0 0 79 1 species Acidaminococcus intestini 187327 0 92 1 no rank 33974 0 92 1 genus 1930845 0 1 92 Ndongobacter massiliensis species 1871025 0 5 227 phylum 67819 Fimbriimonadia 8 class 1663419 5 227 1 0 1 0 order 1 Fimbriimonadales 1663425 4 219 1 0 1663426 family 2 Fimbriimonadaceae 3 218 2 216 1005038 1 genus Fimbriimonas 0 1 1 215 1005039 Fimbriimonas ginsengisoli species 0 4 231 phylum 200938 0 4 231 118001 class 0 231 4 189769 4 Chrysiogenales order 0 1 0 1 227 3 189770 2 family Chrysiogenaceae 1 0 393029 genus 9 Desulfurispirillum 225 2 0 Desulfurispirillum indicum species 936456 216 1 0 25 5684 200783 phylum 187857 Aquificae 8 class 25 5684 1 0 4 958 1485951 Desulfurobacteriales 5 order 0 1 family 4 Desulfurobacteriaceae 558314 953 3 1 0 64159 genus 1 832 0 1 832 Desulfurobacterium thermolithotrophum species 64160 0 1 117 171868 genus 0 0 1 117 species Thermovibrio ammonificans 228745 0 1 20 4718 32069 order 7 Aquificales 0 1 6 2209 family 3 Hydrogenothermaceae 224027 1 0 182899 1 genus Persephonella 489 2 0 488 1 species Persephonella marina 309805 0 1 1717 3 212790 23 Sulfurihydrogenibium genus 777 1 309806 Sulfurihydrogenibium azorense species 0 no rank 2619248 1 917 0 0 1 917 436114 Sulfurihydrogenibium sp. YO3AOP1 species 0 no rank 90150 1 239 0 239 1 genus 412592 412593 species Thermosulfidibacter takaii 1 239 0 12 2263 64898 2 family Aquificaceae 0 1 0 1 131 genus 939 0 1 131 species Hydrogenobacter thermophilus 940 101 1 genus 2713 0 0 1 101 species Aquifex aeolicus 63363 1 0 168657 64 genus Hydrogenobaculum 1829 6 2622382 no rank 1765 5 0 0 1 348 547145 species Hydrogenobaculum sp. SHO 0 Hydrogenobaculum sp. HO species 547144 348 1 1 348 species Hydrogenobaculum sp. SN 547146 0 0 547143 species Hydrogenobaculum sp. 3684 1 348 0 380749 Hydrogenobaculum sp. Y04AAS1 species 373 1 1 0 1 Thermocrinis genus 75905 3 200 0 136094 Thermocrinis albus species 1 109 0 1 90 species Thermocrinis ruber 75906 0 1 2027 1588383 1224 phylum 166 Proteobacteria 0 1807140 class 6 834 225057 25 Acidithiobacillales order 834 6 1 0 0 1 5 809 225058 9 Acidithiobacillaceae family 1 0 119977 genus 25 Acidithiobacillus 4 800 0 Acidithiobacillus caldus species 33059 1 338 0 species Acidithiobacillus ferrivorans 160808 1 227 920 species Acidithiobacillus ferrooxidans 1 210 0 0 1 11 2980 1553900 3 class Oligoflexia 0 1 5 1720 order 4 Bacteriovoracales 2024979 1 0 1 family Halobacteriovoraceae 1652132 1197 2 0 1196 1 1652133 genus 0 1196 1 97084 species Halobacteriovorax marinus 0 family 263369 2 519 519 2 Bacteriovorax 5 genus 146784 0 1 960 species Bacteriovorax stolpii 1 514 0 0 1 1257 5 3 Bdellovibrionales order 213481 213483 Bdellovibrionaceae 13 family 1254 4 1 0 3 1241 4 genus Bdellovibrio 958 0 1 388 1 453816 species Bdellovibrio exovorus 0 959 species Bdellovibrio bacteriovorus 849 1 0 68525 subphylum 77043 193 0 1 0 29 Epsilonproteobacteria class 29547 43624 71 64 42606 213849 86 order Campylobacterales 0 1 0 1 41 35282 family 69 Campylobacteraceae 72294 0 no rank 2321108 9709 5 1 2317 genus 2321187 0 0 species Arcobacter sp. LPB0137 1850254 2317 1 0 1 3 4915 51 genus Arcobacter 28196 0 1846 1 Arcobacter nitrofigilis species 28199 0 28197 species Arcobacter butzleri 3018 1 2321207 no rank 2477 1 0 0 944547 Arcobacter sp. L species 1 2477 22802 26 194 130 Campylobacter genus 0 1 260714 species Campylobacter insulaenigrae 1 1127 0 0 1 543 522485 Campylobacter avium species 0 Campylobacter lari species 201 1 2658 0 135 1 Campylobacter curvus species 200 0 1155 1 species Campylobacter ureolyticus 827 379 1 Campylobacter lanienae species 75658 0 28898 species Campylobacter helveticus 1 443 0 1965231 species Campylobacter pinnipediorum 1296 1 0 0 374106 species Campylobacter cuniculorum 696 1 197 species Campylobacter jejuni 1 2005 0 0 1007 1 1031542 Campylobacter volucris species 0 Campylobacter gracilis species 824 1 128 0 196 species Campylobacter fetus 982 1 0 1 471 1244531 Campylobacter iguaniorum species 0 1 1539 Campylobacter sputorum species 206 species Campylobacter hominis 76517 552 1 0 0 1023 1 497724 Campylobacter subantarcticus species 0 Campylobacter concisus species 199 1 559 2844 4 2593542 no rank 0 species Campylobacter sp. RM6137 1660073 1 454 0 1500960 species Campylobacter sp. RM16704 1 1061 0 1 651 Campylobacter sp. RM12175 species 1660076 0 0 1660074 Campylobacter sp. RM8964 species 1 678 species Campylobacter peloridis 488546 1 857 0 0 1 717 198 species Campylobacter hyointestinalis 0 1 1556 195 Campylobacter coli species 0 1 9 2702 57665 43 Sulfurospirillum genus 172 1 species Sulfurospirillum cavolei 366522 0 0 1 292 species Sulfurospirillum barnesii 44674 0 species Sulfurospirillum deleyianum 65553 395 1 2618290 no rank 1325 3 0 1 370 220622 Sulfurospirillum sp. JPD-1 species 0 410 1 Sulfurospirillum sp. SL2-1 species 1986224 0 545 1 1581011 Sulfurospirillum sp. UCH001 species 0 0 Sulfurospirillum multivorans species 66821 1 239 194424 Sulfurospirillum halorespirans species 1 236 0 2771472 family 4 620 0 0 1 427 3 17 Sulfurovum genus 265570 0 206403 Sulfurovum lithotrophicum species 194 1 0 no rank 2646778 1 216 Sulfurovum sp. NBC37-1 species 387093 216 1 0 genus 269260 1 193 0 0 species Nitratifractor salsuginis 269261 193 1 1 0 72293 4 family Helicobacteraceae 5277 14 18 genus Helicobacter 209 12 5143 1 0 Helicobacter himalayensis species 1591088 1 186 0 Helicobacter bilis species 37372 413 1 0 1 259 Helicobacter typhlonius species 76936 0 195 1 Helicobacter mustelae species 217 0 327 1 213 species Helicobacter cinaedi 0 1 200 Helicobacter acinonychis species 212 0 2170 1 210 Helicobacter pylori species 0 1 137 Helicobacter felis species 214 0 0 species Helicobacter hepaticus 32025 409 1 2593540 no rank 217 1 0 1 217 Helicobacter sp. MIT 01-6242 species 222136 0 0 612 1 species Helicobacter cetorum 138563 0 130 1 843 genus 1 130 Wolinella succinogenes species 844 0 0 1341 4 family 2771471 1 0 202746 genus 7 Sulfurimonas 3 1176 0 683 1 39766 Sulfurimonas denitrificans species 0 species Sulfurimonas autotrophica 202747 486 1 0 genus 286130 165 1 0 165 1 Sulfuricurvum kujiense species 148813 0 1 6 989 Nautiliales 5 order 235899 698 3 224467 2 Nautiliaceae family 0 1 2 696 191291 5 Nautilia genus 0 1 0 species Nautilia profundicola 244787 1 691 286 2 2795691 family 0 286 2 3 genus Nitratiruptor 269258 0 1 283 1 2624044 no rank 0 Nitratiruptor sp. SB155-2 species 387092 1 283 0 class 46 Deltaproteobacteria 28221 122 33419 1 0 Desulfarculales 4 order 453227 251 4 1 0 1 0 Desulfarculaceae 7 family 453228 3 247 0 1 240 2 2 genus Desulfarculus 453229 238 1 species Desulfarculus baarsii 453230 0 0 1 24 4705 213115 40 Desulfovibrionales order 2 151 family 213117 0 151 2 1 genus Desulfohalobium 45662 0 1 150 1 45663 species Desulfohalobium retbaense 0 family 213116 413 3 0 1 0 898 2 genus Desulfomicrobium 413 3 0 899 Desulfomicrobium baculatum species 1 229 0 Desulfomicrobium orale species 132132 1 182 family 37 Desulfovibrionaceae 194924 4101 18 1 0 0 1 4 592 14 genus Pseudodesulfovibrio 2035811 0 122 1 57320 Pseudodesulfovibrio profundus species 0 182210 species Pseudodesulfovibrio aespoeensis 244 1 Pseudodesulfovibrio indicus species 1716143 1 212 0 0 genus 2794998 374 1 0 Desulfovibrio salexigens species 880 1 374 872 25 Desulfovibrio genus 1931 9 1 0 Desulfovibrio desulfuricans species 876 1 312 0 0 1 585 Desulfovibrio vulgaris species 881 184917 species Desulfovibrio magneticus 360 1 0 0 species Desulfovibrio alaskensis 58180 203 1 0 44742 Desulfovibrio fairfieldensis species 1 136 2593640 no rank 107 1 0 0 107 1 species Desulfovibrio sp. G11 631220 0 56 1 1725232 Candidatus Desulfovibrio trichonymphae species 0 species Desulfovibrio piger 901 147 1 2 959 1 genus Lawsonia 41707 0 1 1 958 29546 Lawsonia intracellularis species 0 0 2582840 genus 208 1 1 208 873 Desulfovibrio africanus species 0 19 3507 order 26 Desulfobacterales 213118 0 1 1 0 213119 7 Desulfobacteraceae family 2379 9 2 843 218207 Desulfatibacillum 8 genus 0 1 0 835 1 Desulfatibacillum alkenivorans species 259354 789 1 genus 28222 0 0 Desulfobacula toluolica species 28223 1 789 2295 genus 2 Desulfobacterium 2 269 1 0 267 1 species Desulfobacterium autotrophicum 2296 0 1 0 1 genus Desulfococcus 896 3 471 0 203 1 species Desulfococcus multivorans 897 0 181663 Desulfococcus oleovorans species 267 1 12 family Desulfobulbaceae 213121 1102 9 1 0 0 1 191 2 3 Desulfobulbus genus 893 0 species Desulfobulbus sp. ORNL 1986146 1 188 0 1 183 2 427922 Desulfurivibrio 2 genus 0 181 1 species Desulfurivibrio alkaliphilus 427923 0 1 2 373 3 Desulfotalea genus 109168 Desulfotalea psychrophila species 84980 1 370 0 2 343 53318 genus 3 Desulfocapsa 0 1 Desulfocapsa sulfexigens species 65555 1 340 0 0 1 1448 5 1 Desulfurellales order 213113 0 1 1447 4 4 Desulfurellaceae family 117942 0 genus 33001 985 1 0 1 985 33002 species Desulfurella acetivorans 1 0 Hippea 2 genus 84404 2 458 Hippea maritima species 84405 1 456 0 1 0 213462 Syntrophobacterales 9 order 8 793 0 1 191 2 6 family Syntrophobacteraceae 213465 0 29526 genus 185 1 0 1 185 119484 species Syntrophobacter fumaroxidans 5 593 11 Syntrophaceae family 213468 0 1 0 1 146 genus 60892 146 1 60893 Desulfobacca acetoxidans species 0 0 1 2 197 43773 1 Syntrophus genus 0 species Syntrophus aciditrophicus 316277 196 1 genus 2357 1 239 0 1 239 2358 Desulfomonile tiedjei species 0 order 162 Myxococcales 29 37 17851 1 0 0 3 1538 suborder 224462 0 1 1538 3 9 Kofleriaceae family 224464 13 Haliangium genus 162027 1529 2 1 0 Haliangium ochraceum species 80816 1 1516 0 80812 suborder 8 5948 0 1291 3 1055686 Sandaracinaceae 13 family 0 1 1 0 10 genus Sandaracinus 1055688 2 1278 0 927083 species Sandaracinus amylolyticus 1 1268 1 0 family 18 Polyangiaceae 49 5 4657 884 2 7 genus Chondromyces 50 0 1 0 Chondromyces crocatus species 52 1 877 1 0 Sorangium 11 genus 39643 3755 2 0 1 3744 Sorangium cellulosum species 56 0 suborder 80811 10203 25 0 2 438 1524213 family 0 1 2 438 3 genus Vulgatibacter 1524214 0 435 1 Vulgatibacter incomptus species 1391653 1 0 25 Myxococcaceae family 31 9 4559 32 Myxococcus 86 genus 5 3104 1 0 0 1 624 Myxococcus hansupus species 1297742 0 species Myxococcus stipitatus 83455 660 1 0 1 1244 species Myxococcus fulvus 33 490 1 species Myxococcus xanthus 34 0 1 0 Corallococcus 31 genus 83461 3 1430 647 1 Myxococcus macrosporus species 35 0 0 752 1 Corallococcus coralloides species 184914 0 1 9 3057 39 57 family Archangiaceae 1 0 42 11 Cystobacter genus 742 2 0 1 731 43 Cystobacter fuscus species 1 0 40 genus 2 Stigmatella 548 2 546 1 Stigmatella aurantiaca species 41 0 1 0 47 5 genus Archangium 2 1098 0 species Archangium gephyra 48 1093 1 4 genus Melittangium 44 2 612 1 0 Melittangium boletus species 83453 608 1 0 0 1 5 2149 Anaeromyxobacteraceae 8 family 1524215 2141 4 161492 24 genus Anaeromyxobacter 0 1 0 1149 2 no rank 2620896 0 species Anaeromyxobacter sp. Fw109-5 404589 571 1 447217 Anaeromyxobacter sp. K species 578 1 0 968 1 Anaeromyxobacter dehalogenans species 161493 0 60 Desulfuromonadales order 69541 24 4818 1 0 0 1 14 3255 family 25 Geobacteraceae 213422 2964 11 39 Geobacter genus 28231 0 1 0 Geobacter daltonii species 1203471 238 1 0 1 243 345632 species Geobacter pickeringii 1 207 35554 Geobacter sulfurreducens species 0 0 313985 Geobacter lovleyi species 211 1 239 1 Geobacter bemidjiensis species 225194 0 0 191 1 species Geobacter anodireducens 1340425 333 1 Geobacter metallireducens species 28232 0 0 622 2 2627627 no rank 0 239 1 species Geobacter sp. M21 443144 0 443143 Geobacter sp. M18 species 383 1 0 species Geobacter uraniireducens 351604 1 641 392332 14 Geoalkalibacter genus 266 2 1 0 0 483547 Geoalkalibacter subterraneus species 252 1 9 1503 Desulfuromonadaceae 14 family 213421 0 1 0 1 3 704 890 12 Desulfuromonas genus 0 no rank 2614637 321 1 321 1 1823759 species Desulfuromonas sp. DDH964 0 0 371 1 species Desulfuromonas soudanensis 1603606 5 785 15 Pelobacter genus 18 0 1 1 248 species Pelobacter propionicus 29543 0 19 species Pelobacter carbinolicus 184 1 0 0 193 1 no rank 2620299 193 1 species Pelobacter sp. SFB93 1842532 0 1 145 species Pelobacter acetylenicus 29542 0 1 0 1236 702 Gammaproteobacteria class 960031 900 0 1 6883 29 30 Aeromonadales order 135624 1 0 Aeromonadaceae 69 family 84642 6853 28 0 1 338 2 8 genus Oceanimonas 129577 330 1 no rank 2636315 0 Oceanimonas sp. GK1 species 511062 1 330 0 3 Tolumonas genus 43947 2 242 1 0 species Tolumonas auensis 43948 239 1 0 11 genus Oceanisphaera 225143 3 609 1 0 0 1416627 Oceanisphaera profunda species 1 279 species Oceanisphaera sp. AMac2203 1903694 319 1 0 0 1 2 383 4 Zobellella genus 347533 347534 species Zobellella denitrificans 1 379 0 18 5212 642 245 Aeromonas genus 0 1 species Aeromonas dhakensis 196024 1 198 0 Aeromonas salmonicida species 645 1 598 0 0 648 Aeromonas caviae species 139 1 257493 no rank 1538 8 0 Aeromonas sp. ASNIH4 species 1636609 231 1 0 species Aeromonas sp. CU5 2033033 178 1 0 1636607 Aeromonas sp. ASNIH2 species 1 140 0 1 246 2033032 species Aeromonas sp. CA23 0 227 1 species Aeromonas sp. ASNIH5 1758179 0 1 138 Aeromonas sp. ASNIH3 species 1636608 0 0 1 144 1920107 Aeromonas sp. ASNIH7 species 234 1 1636606 Aeromonas sp. ASNIH1 species 0 558964 Aeromonas aquatica species 1 215 0 0 1 168 Aeromonas schubertii species 652 0 1 200 Aeromonas media species 651 Aeromonas rivipollensis species 948519 1 239 0 Aeromonas hydrophila species 644 1161 1 0 0 654 Aeromonas veronii species 1 511 135614 123 order Xanthomonadales 21744 54 1 0 1775411 family 15 Rhodanobacteraceae 14 2569 1 0 0 1 2 399 6 genus Rhodanobacter 75309 0 393 1 Rhodanobacter denitrificans species 666685 0 1 2 446 4 genus Dokdonella 323413 442 1 323415 species Dokdonella koreensis 0 0 2233801 genus 194 1 1 194 Xanthomonadales bacterium D13 species 2021234 0 0 1 2 218 70411 genus 6 Frateuria 0 212 1 Frateuria aurantia species 81475 1026 4 231454 genus 25 Dyella 0 1 Dyella thiooxydans species 445710 1 389 0 0 species Dyella japonica 231455 307 1 1379159 Dyella jiangningensis species 1 305 0 271 2 242605 genus 4 Luteibacter 0 1 242606 species Luteibacter rhizovicinus 1 267 0 1 0 180 Xanthomonadaceae family 32033 19052 39 0 1 3 946 83618 15 genus Pseudoxanthomonas 0 415229 species Pseudoxanthomonas spadix 1 281 0 314722 species Pseudoxanthomonas suwonensis 650 1 5003 9 genus 84 Stenotrophomonas 40323 0 1 0 species Stenotrophomonas acidaminiphila 128780 1 618 1 256 216778 species Stenotrophomonas rhizophila 0 0 2368 1 995085 species group species Stenotrophomonas maltophilia 40324 2368 1 0 no rank 196198 4 1341 0 0 species Stenotrophomonas sp. LM091 1904944 1 250 331 1 species Stenotrophomonas sp. KCTC 12332 1793721 0 Stenotrophomonas sp. MYb57 species 1827305 417 1 0 1 343 species Stenotrophomonas sp. WZN-1 2005046 0 83617 Stenotrophomonas nitritireducens species 336 1 0 83614 1 genus Luteimonas 2 302 1 0 0 2006110 species Luteimonas sp. 100111 301 1 8623 17 338 259 Xanthomonas genus 0 1 0 339 species Xanthomonas campestris 1 1450 species Xanthomonas alfalfae 366650 180 1 0 0 1 234 442694 Xanthomonas perforans species 0 1 176 53413 Xanthomonas axonopodis species 343 Xanthomonas translucens species 643 1 0 171 1 56459 Xanthomonas vasicola species 0 48664 species Xanthomonas fragariae 378 1 0 0 1 190 species Xanthomonas phaseoli 1985254 29447 Xanthomonas albilineans species 255 1 0 643453 species group 2 1762 0 346 Xanthomonas citri species 1 1417 0 345 1 species Xanthomonas fuscans 366648 0 0 456327 species Xanthomonas euvesicatoria 1 251 0 347 Xanthomonas oryzae species 1584 1 0 391 1 Xanthomonas vesicatoria species 56460 1 401 Xanthomonas sacchari species 56458 0 56454 species Xanthomonas hortorum 298 1 0 1164 2 7 Xylella genus 2370 0 1 1 1157 2371 species Xylella fastidiosa 0 24 Lysobacter genus 68 2834 5 1 0 1 917 435897 Lysobacter capsici species 0 0 461 1 species Lysobacter gummosus 262324 84531 species Lysobacter antibioticus 1 917 0 0 species Lysobacter enzymogenes 69 1 515 135613 order 101 Chromatiales 52 11250 1 0 451214 no rank 434 2 0 14 Thiohalobacter genus 1273155 434 2 1 0 1 420 585455 species Thiohalobacter thiocyanaticus 0 0 1 639 3 449719 Granulosicoccaceae 7 family 1 0 13 Granulosicoccus genus 437504 632 2 437505 species Granulosicoccus antarcticus 619 1 0 1 0 255526 Halothiobacillaceae 4 family 447 4 3 443 genus 17 Halothiobacillus 109262 0 1 214 1 927 Halothiobacillus neapolitanus species 0 0 212 1 2636392 no rank 0 212 1 Halothiobacillus sp. LS2 species 1860122 1676141 family 4 Wenzhouxiangellaceae 480 3 1 0 0 1 2 476 genus 8 Wenzhouxiangella 1676142 1 468 1579979 species Wenzhouxiangella marina 0 family 52 Ectothiorhodospiraceae 72276 18 3849 1 0 0 1 2 375 133193 5 genus Alkalilimnicola 0 1 370 351052 species Alkalilimnicola ehrlichii 1 0 1335745 12 Spiribacter genus 3 551 0 302 1 Spiribacter curvatus species 1335757 0 237 1 Spiribacter salinus species 1335746 63 Thioalkalivibrio genus 106633 6 1915 1 0 0 species Thioalkalivibrio paradoxus 108010 1 367 496 1 1033854 Thioalkalivibrio sulfidiphilus species 0 0 Thioalkalivibrio nitratireducens species 186931 362 1 no rank 2621013 1 352 0 0 396595 Thioalkalivibrio sp. K90mix species 1 352 0 275 1 106634 species Thioalkalivibrio versutus 0 1 316 2 85108 Halorhodospira 4 genus 312 1 1053 species Halorhodospira halophila 0 322 2 1051 Ectothiorhodospira 7 genus 0 1 0 1 315 2684909 no rank 315 1 species Ectothiorhodospira sp. BSL-9 1442136 0 0 1 2 318 1765964 genus 7 Acidihalobacter 0 1 311 species Acidihalobacter prosperus 160660 0 1 4917 18 43 Chromatiaceae family 1046 1 0 156885 Thioflavicoccus 12 genus 477 2 0 Thioflavicoccus mobilis species 80679 465 1 0 1 2 325 85072 Allochromatium 2 genus 1049 Allochromatium vinosum species 323 1 0 0 1 332 2 2 genus Thiocystis 13724 0 Thiocystis violascens species 73141 330 1 1 0 1980513 Candidatus Nitrosoglobus 4 genus 578 2 1 574 Candidatus Nitrosoglobus terrae species 1630141 0 1213 4 12 genus Nitrosococcus 1227 0 1 271 1 133539 species Nitrosococcus halophilus 0 473531 species Nitrosococcus watsonii 568 1 0 0 362 1 Nitrosococcus oceani species 1229 9 genus Marichromatium 85076 2 488 1 0 0 species Marichromatium purpuratum 37487 479 1 2 1084 53392 genus 16 Thiodictyon 0 1 0 1166950 species Candidatus Thiodictyon syntrophicum 1 1068 377 1 82569 no rank 0 0 1978339 species Chromatiaceae bacterium 2141T.STBD.0c.01a 377 1 0 1 3 383 1 Woeseiaceae family 1738654 0 1 2 382 7 Woeseia genus 1738655 0 375 1 1548547 Woeseia oceani species 0 698 2 no rank 33811 species gamma proteobacterium HdN1 83406 362 1 0 1 336 endosymbiont of unidentified scaly snail isolate Monju species 1248727 0 11019 33 135625 Pasteurellales 2 order 0 1 32 11017 family 69 Pasteurellaceae 712 0 1 1 0 9 Mannheimia genus 75984 4 1177 312 1 no rank 2645054 0 1432056 species Mannheimia sp. USDA-ARS-USMARC-1261 1 312 0 1 414 75985 Mannheimia haemolytica species 0 0 1 442 species Mannheimia varigena 85404 1950 3 15 Pasteurella genus 745 0 1 0 535 1 species Pasteurella dagmatis 754 species Pasteurella multocida 747 1 1400 0 1 0 724 27 genus Haemophilus 3633 6 0 1 377 729 Haemophilus parainfluenzae species 1835 1 species Haemophilus influenzae 727 0 0 730 [Haemophilus] ducreyi species 783 1 0 327 1 no rank 2609962 0 327 1 712310 Haemophilus sp. oral taxon 036 species 0 Haemophilus pittmaniae species 249188 1 284 2 237 697331 Basfia 5 genus 0 1 1 232 [Mannheimia] succiniciproducens species 157673 0 0 1 647 3 Aggregatibacter 5 genus 416916 279 1 Aggregatibacter actinomycetemcomitans species 714 0 363 1 732 species Aggregatibacter aphrophilus 0 21 Actinobacillus genus 713 5 1058 1 0 716 Actinobacillus suis species 249 1 0 321 1 715 species Actinobacillus pleuropneumoniae 0 718 species Actinobacillus equuli 1 279 0 67854 species Actinobacillus succinogenes 188 1 0 0 1 2 402 genus 3 Gallibacterium 155493 Gallibacterium anatis species 750 399 1 0 0 1 498 2 476528 2 Bibersteinia genus 1 496 47735 species Bibersteinia trehalosi 0 0 1 648 2 2094023 1 genus Glaesserella 0 1 647 Glaesserella parasuis species 738 214906 Histophilus 1 genus 698 2 1 0 0 1 697 Histophilus somni species 731 569309 44 25 order Vibrionales 135623 0 1 641 family 97 Vibrionaceae 43 569284 1 0 19 genus Aliivibrio 511678 2340 4 1 0 0 1 887 species Aliivibrio wodanis 80852 0 668 Aliivibrio fischeri species 753 1 0 Aliivibrio salmonicida species 40269 681 1 246861 Grimontia 2 genus 361 2 1 0 0 673 Grimontia hollisae species 1 359 0 1 2 2354 2042066 12 genus Paraphotobacterium 0 1 2342 1755811 Paraphotobacterium marinum species 662 genus 1227 Vibrio 558365 30 1 0 0 1 2490 1891919 species group 0 29498 Vibrio tubiashii species 2490 1 0 Vibrio scophthalmi species 45658 1 1055 28173 species Vibrio nigripulchritudo 1136 1 0 0 416 1 species Vibrio breoganii 553239 0 451 1 2025808 species Vibrio qinghaiensis 29494 Vibrio furnissii species 1 452 0 1660 1 species Vibrio anguillarum 55601 0 544 1 species Vibrio tritonius 1435069 0 0 2956 1 species Vibrio hyugaensis 1534743 Vibrio tasmaniensis species 212663 739 1 0 0 7072 1 Vibrio vulnificus species 672 0 474 1 674 species Vibrio mimicus 0 687 species Vibrio gazogenes 506 1 0 1 671 Vibrio tapetis species 52443 0 1026 2 2614977 no rank 0 1 632 Vibrio sp. EJY3 species 1116375 Vibrio sp. 2521-89 species 2014742 1 394 0 2804 1 Vibrio cholerae species 666 0 719 1 676 Vibrio fluvialis species 0 10 197317 717610 species group 0 0 species subgroup 2315253 3108 2 1 971 Vibrio antiquarius species 150340 0 0 species Vibrio diabolicus 50719 1 2137 Vibrio owensii species 696485 1 10929 0 0 1 8406 663 Vibrio alginolyticus species 669 Vibrio harveyi species 1 76517 0 0 Vibrio rotiferianus species 190895 1 31136 0 670 Vibrio parahaemolyticus species 4946 1 0 species Vibrio natriegens 691 1 1385 0 Vibrio campbellii species 680 1 56879 766224 species Vibrio jasicida 1 4011 0 0 334650 1 190893 Vibrio coralliilyticus species 0 1 4 5767 657 4 Photobacterium genus 0 species Photobacterium profundum 74109 661 1 0 38293 species Photobacterium damselae 4644 1 0 1295392 Photobacterium gaetbulicola species 458 1 72274 168 Pseudomonadales order 128 63033 1 0 213 family Pseudomonadaceae 135621 85 38729 1 0 genus 1849530 486 1 0 0 1 486 1697053 species Oblitimonas alkaliphila 1010 3 subfamily 351 0 1010 3 Azotobacter 7 genus 352 0 1 0 species Azotobacter vinelandii 354 373 1 353 species Azotobacter chroococcum 630 1 0 1 0 1080 Pseudomonas genus 286 37020 80 0 species group 136841 5112 6 1204 1 300 species Pseudomonas mendocina 0 2050 1 Pseudomonas aeruginosa species 287 0 Pseudomonas resinovorans species 53412 1 394 0 0 1 643 species Pseudomonas citronellolis 53408 1232139 species subgroup 1 468 0 Pseudomonas furukawaii species 1149133 1 468 0 0 43263 Pseudomonas alcaligenes species 353 1 0 Pseudomonas entomophila species 312306 1 220 0 237610 Pseudomonas psychrotolerans species 1 351 0 1583341 species Pseudomonas cerasi 1 249 species group 136845 5215 6 0 0 47880 species Pseudomonas fulva 397 1 0 Pseudomonas monteilii species 76759 1 687 303 Pseudomonas putida species 1 3023 0 1 204 70775 species Pseudomonas plecoglossicida 0 0 308 1 species Pseudomonas oryzihabitans 47885 78327 Pseudomonas mosselii species 596 1 0 1 387 65741 species Pseudomonas knackmussii 0 208 1 Pseudomonas rhizosphaerae species 216142 0 0 228 1 species Pseudomonas cremoricolorata 157783 0 104087 Pseudomonas frederiksbergensis species 570 1 1720 2 136842 species group 0 1 369 Pseudomonas fragi species 296 0 587753 species Pseudomonas chlororaphis 1 1351 0 0 198620 Pseudomonas koreensis species 1 430 0 9 5497 species group 136843 species Pseudomonas fluorescens 294 3380 1 0 378 1 380021 species Pseudomonas protegens 0 0 1 197 75612 Pseudomonas mandelii species 0 species Pseudomonas trivialis 200450 260 1 209 1 species Pseudomonas veronii 76761 0 Pseudomonas azotoformans species 47878 1 510 0 species Pseudomonas poae 200451 1 183 0 76758 species Pseudomonas orientalis 184 1 0 0 47879 Pseudomonas corrugata species 196 1 0 101564 Pseudomonas alcaliphila species 303 1 0 species Pseudomonas lurida 244566 1 173 199 1 219572 Pseudomonas antarctica species 0 485 1 Pseudomonas brassicacearum species 930166 0 237609 species Pseudomonas alkylphenolica 1 224 0 1 232 1788301 species Pseudomonas versuta 0 species group 136846 2505 2 0 326 1 species Pseudomonas balearica 74829 0 0 1 2179 species subgroup 578833 0 1 2179 316 Pseudomonas stutzeri species 7435 30 no rank 196821 0 0 1 199 2083055 Pseudomonas sp. LH1G9 species species Pseudomonas sp. StFLB209 1028989 1 247 0 2083051 Pseudomonas sp. SWI6 species 1 202 0 0 210 1 2083052 Pseudomonas sp. SWI36 species 294 1 Pseudomonas sp. LPH1 species 1898684 0 Pseudomonas sp. NC02 species 2067572 230 1 0 species Pseudomonas sp. Os17 1500686 243 1 0 1636610 Pseudomonas sp. PONIH3 species 245 1 0 0 1 184 69328 Pseudomonas sp. VLB120 species 0 1 218 1649877 species Pseudomonas sp. CCOS 191 2083053 species Pseudomonas sp. SWI44 1 206 0 0 1 218 species Pseudomonas sp. M30-35 1981174 species Pseudomonas sp. S-6-2 1931241 1 347 0 194 1 2083054 species Pseudomonas sp. LG1D9 0 0 1 180 Pseudomonas sp. FDAARGOS_380 species 2018067 175 1 species Pseudomonas sp. HLS-6 2049589 0 383 1 species Pseudomonas sp. URMO17WK12:I11 1283291 0 1611770 Pseudomonas sp. MRSN12121 species 1 278 0 Pseudomonas sp. DR 5-09 species 1534110 233 1 0 species Pseudomonas sp. UW4 1207075 218 1 0 Pseudomonas sp. ATCC 13867 species 1294143 1 331 0 0 1500687 Pseudomonas sp. St29 species 221 1 0 1 196 Pseudomonas sp. JY-Q species 1338689 1856685 Pseudomonas sp. TCU-HL1 species 1 353 0 224 1 1659194 species Pseudomonas sp. GR 6-02 0 Pseudomonas sp. CC6-YY-74 species 1930532 499 1 0 0 181 1 2069256 Pseudomonas sp. XWY-1 species 140 1 1827300 Pseudomonas sp. MYb193 species 0 species Pseudomonas sp. FGI182 1259844 1 224 0 0 1415630 Pseudomonas sp. TKP species 362 1 411 1 157782 species Pseudomonas parafulva 0 1 366 1853130 species Pseudomonas silesiensis 0 0 3420 8 species group 136849 251701 Pseudomonas syringae group genomosp. 3 species 467 1 0 596 2 251698 species subgroup 0 0 29438 Pseudomonas savastanoi species 1 300 296 1 Pseudomonas amygdali species 47877 0 195 1 46257 species Pseudomonas avellanae 0 33069 Pseudomonas viridiflava species 1 188 0 1 174 2775504 no rank 0 0 1 174 Pseudomonas sp. Lz4W species 1206777 species Pseudomonas cichorii 36746 216 1 0 0 251695 species subgroup 1584 1 1 1584 species Pseudomonas syringae 317 0 468 47 Moraxellaceae family 42 24136 1 0 475 16 Moraxella genus 1999 5 1 0 29433 Moraxella ovis species 1 266 0 0 34062 species Moraxella osloensis 1 747 0 species Moraxella catarrhalis 480 515 1 Moraxella bovoculi species 386891 455 1 0 0 1 11 3901 104 genus Psychrobacter 497 0 no rank 196806 2294 6 0 349106 species Psychrobacter sp. PRwf-1 483 1 1 372 species Psychrobacter sp. DAB_AL43B 1028416 0 0 349 1 1720344 species Psychrobacter sp. AntiMn-1 0 571800 Psychrobacter sp. G species 322 1 0 356 1 species Psychrobacter sp. P11G5 1699624 0 412 1 1699622 Psychrobacter sp. P2G3 species 404 1 45610 Psychrobacter urativorans species 0 1 341 334543 species Psychrobacter arcticus 0 species Psychrobacter alimentarius 261164 1 427 0 331 1 330922 Psychrobacter cryohalolentis species 0 469 256 Acinetobacter genus 25 18189 1 0 3268 7 no rank 196816 0 0 1 537 species Acinetobacter sp. ACNIH2 1758189 0 1646498 Acinetobacter sp. TTH0-4 species 580 1 0 424 1 1636603 species Acinetobacter sp. ACNIH1 341 1 species Acinetobacter sp. LoGeW2-3 1808001 0 0 1 437 Acinetobacter sp. NCu2D-2 species 1608473 species Acinetobacter sp. TGL-Y2 1407071 487 1 0 0 2079596 Acinetobacter sp. SWBY1 species 462 1 1 752 106648 species Acinetobacter bereziniae 0 0 species Acinetobacter schindleri 108981 1 391 0 1 474 40216 species Acinetobacter radioresistens species Acinetobacter equi 1324350 1 1041 0 244 1 Acinetobacter indicus species 756892 0 1 725 species Acinetobacter haemolyticus 29430 0 0 1 555 species 202950 0 555 1 62977 strain Acinetobacter sp. ADP1 0 1148157 Acinetobacter oleivorans species 1 650 0 7686 5 species group 909768 0 species Acinetobacter calcoaceticus 471 1 1203 1785128 species Acinetobacter lactucae 1 657 0 species Acinetobacter pittii 48296 2314 1 0 2650 1 470 species Acinetobacter baumannii 0 0 species Acinetobacter nosocomialis 106654 1 862 0 1 435 1789224 Acinetobacter larvae species 0 821 1 Acinetobacter junii species 40215 441 1 487316 species Acinetobacter soli 0 0 Acinetobacter johnsonii species 40214 450 1 order 135615 355 3 0 1 0 4 Cardiobacteriaceae family 868 355 3 351 2 869 4 Dichelobacter genus 0 1 1 347 870 Dichelobacter nodosus species 0 1 0 19 Legionellales order 118969 13806 21 1 0 118968 30 family Coxiellaceae 5 1844 0 1 3 1163 776 14 genus Coxiella 777 Coxiella burnetii species 531 1 0 0 2676648 no rank 618 1 0 618 1 325775 Coxiella endosymbiont of Amblyomma americanum species 651 1 no rank 134284 0 0 Coxiella-like endosymbiont species 1592897 651 1 0 1 15 11943 444 29 Legionellaceae family 1 0 genus 6 Tatlockia 465 667 2 1 661 451 species Tatlockia micdadei 0 0 1 11247 12 Legionella 86 genus 445 1 974 450 Legionella longbeachae species 0 0 species Legionella sainthelensi 28087 1 1042 0 768 1 Legionella waltersii species 66969 96230 species Legionella fallonii 936 1 0 0 species Legionella lansingensis 45067 1 614 29423 Legionella oakridgensis species 1 616 0 0 446 species Legionella pneumophila 3166 1 species Legionella endosymbiont of Polyplax serrata 2005262 1211 1 0 0 768 1 449 Legionella hackeliae species species Legionella clemsonensis 1867846 1 732 0 452 species Legionella spiritensis 334 1 0 6 Immundisolibacterales order 1934945 4 489 1 0 1 0 1934946 Immundisolibacteraceae 8 family 483 3 475 2 genus 4 Immundisolibacter 1934947 0 1 0 1 471 Immundisolibacter cernigliae species 1810504 0 1 2752 13 20 Methylococcales order 135618 1 0 403 Methylococcaceae 20 family 2732 12 1 0 413 6 genus Methylococcus 2 220 0 414 Methylococcus capsulatus species 1 214 1 0 416 50 genus Methylomonas 1668 5 Methylomonas methanica species 421 342 1 0 0 1 415 no rank 2608980 species Methylomonas sp. DH-1 1727196 1 415 0 345 1 702114 Methylomonas koyamae species 0 0 species Methylomonas denitrificans 1538553 516 1 1 0 5 genus Methylomicrobium 39773 2 511 506 1 271065 Methylomicrobium alcaliphilum species 0 0 1 2 313 762296 2 Methylovulum genus 0 311 1 Methylovulum psychrotolerans species 1704499 1 0 72273 25 order Thiotrichales 36 27253 6781 15 135616 32 Piscirickettsiaceae family 0 1 4 genus Thiomicrospira 933 596 3 1 0 species Thiomicrospira aerophila 92245 321 1 0 Thiomicrospira cyclica species 147268 271 1 0 1 0 2 Hydrogenovibrio genus 28884 2 419 39765 Hydrogenovibrio crunogenus species 1 417 0 3858 4 Cycloclasticus 47 genus 34067 0 1 0 2774 2 2621467 no rank 0 728003 Cycloclasticus sp. PY97N species 1429 1 1 1345 species Cycloclasticus sp. P1 385025 0 1 1037 species Cycloclasticus zancles 1329899 0 1237 Piscirickettsia 3 genus 2 881 1 0 0 1 878 1238 species Piscirickettsia salmonis 0 1 995 3 40222 18 Methylophaga genus 1 504 species Methylophaga nitratireducenticrescens 754476 0 754477 species Methylophaga frappieri 1 473 0 135617 17 Thiotrichaceae family 1608 5 1 0 40751 1 genus Thioploca 777 2 1 0 0 40754 species Thioploca ingrica 776 1 1021 7 Beggiatoa genus 2 814 1 0 807 1 288004 species Beggiatoa leptomitoformis 0 34064 family 23 Francisellaceae 18839 15 1 0 2 1025 genus 1 Allofrancisella 1869285 0 1 1 1024 species Allofrancisella guangzhouensis 594679 0 0 1 17791 12 196 Francisella genus 262 0 906 1 Francisella sp. TX077308 species 573569 0 1403 1 573570 species Francisella sp. TX077310 954 Francisella persica species 890 1 0 0 1 1058 Francisella hispaniensis species 622488 1542390 species Francisella sp. CA97-1460 1 1386 0 2461 1 species Francisella halioticida 549298 0 1 3329 263 species Francisella tularensis 0 0 species Francisella noatunensis 657445 1633 1 2610885 no rank 2 2082 0 0 1138 1 Francisella sp. FSC1006 species 1547445 1 944 species Francisella sp. MA067296 475375 0 1 2447 28110 Francisella philomiragia species 0 1692040 order 4 Acidiferrobacterales 866 6 1 0 862 5 1692041 11 family Acidiferrobacteraceae 0 1 1744881 9 Sulfuricaulis genus 2 329 1 0 0 320 1 Sulfuricaulis limicola species 1620215 1 0 3 genus Sulfurifustis 1692042 2 522 519 1 species Sulfurifustis variabilis 1675686 0 135622 Alteromonadales 117 order 105 99857 1 0 1 0 267889 12 family Colwelliaceae 6019 9 858 2 7 Thalassotalea genus 1518149 0 1 0 1 851 species Thalassotalea crassostreae 1763536 1 0 28228 41 Colwellia genus 6 5149 no rank 196834 3 3023 0 0 1 988 species Colwellia sp. PAMC 20917 1816218 58049 Colwellia sp. MT41 species 1 861 0 species Colwellia sp. PAMC 21821 1816219 1174 1 0 Colwellia psychrerythraea species 28229 1009 1 0 0 1967665 Colwellia beringensis species 1076 1 family 35 Alteromonadaceae 72275 18029 29 1 0 0 1 3344 10 114 genus Marinobacter 2742 Marinobacter adhaerens species 1033846 1 364 0 320 1 Marinobacter similis species 1420916 0 0 1 310 species Marinobacter psychrophilus 330734 0 Marinobacter hydrocarbonoclasticus species 2743 1 494 1874317 Marinobacter salinus species 269 1 0 Marinobacter salarius species 1420917 1 395 0 0 no rank 83889 3 1078 1 345 Marinobacter sp. BSs20148 species 490759 0 1749259 Marinobacter sp. LQ44 species 1 347 0 0 Marinobacter sp. CP1 species 1671721 386 1 genus 3 Lacimicrobium 1751872 423 2 1 0 0 420 1 Lacimicrobium alkaliphilum species 1526571 Alteromonas 71 genus 226 10 11811 1 0 3 1397 no rank 2614992 0 1 456 species Alteromonas sp. MB-3u-76 2058133 0 1777491 Alteromonas sp. Mac1 species 413 1 0 0 528 1 species Alteromonas sp. RW2A1 1917158 589873 species Alteromonas australica 1048 1 0 0 species Alteromonas stellipolaris 233316 1 590 0 species Alteromonas addita 287094 1 422 1400 1 314275 species Alteromonas mediterranea 0 6305 1 28108 species Alteromonas macleodii 0 578 1 Alteromonas naphthalenivorans species 715451 0 0 1 1109 3 89404 10 Glaciecola genus 0 no rank 2618684 1 520 0 983545 Glaciecola sp. 4H-3-7+YE-5 species 1 520 0 1 579 300231 Glaciecola nitratireducens species 0 383 1 genus 261825 0 1 383 680279 Agarivorans gilvus species 1 0 2 genus Paraglaciecola 1621534 2 924 0 326544 Paraglaciecola psychrophila species 922 1 1 0 1 Idiomarinaceae family 267893 1095 6 1 0 20 genus Idiomarina 135575 1094 5 0 Idiomarina loihiensis species 135577 1 296 2 508 no rank 2614829 0 260 1 species Idiomarina sp. OT37-5b 2100422 0 0 2055892 species Idiomarina sp. X4 1 248 species Idiomarina piscisalsi 1096243 270 1 0 0 1 3 881 Moritellaceae 7 family 267891 2 874 58050 genus 2 Moritella 0 1 0 872 1 Moritella viscosa species 80854 1 0 7 family Ferrimonadaceae 267892 309 3 1 0 1 Ferrimonas genus 44011 2 302 301 1 44012 species Ferrimonas balearica 0 0 1 25 9977 25 Shewanellaceae family 267890 0 1 24 9952 22 160 Shewanella genus 0 1 582 56812 species Shewanella frigidimarina 1 515 225848 species Shewanella psychrophila 0 271097 species Shewanella sediminis 1 465 0 0 6 1852 196818 no rank 0 species Shewanella sp. W3-18-1 351745 418 1 0 species Shewanella sp. WE21 2029986 304 1 60480 Shewanella sp. MR-4 species 249 1 0 282 1 species Shewanella sp. ANA-3 94122 0 346 1 2059264 species Shewanella sp. Pdp11 0 60481 species Shewanella sp. MR-7 1 253 0 1 727 Shewanella halifaxensis species 271098 0 0 396 1 Shewanella denitrificans species 192073 0 Shewanella bicestrii species 2018305 223 1 0 463 1 404011 species Shewanella piezotolerans 1 457 24 species Shewanella putrefaciens 0 0 260364 Shewanella marisflavi species 1 201 0 242 1 species Shewanella loihica 359303 0 Shewanella woodyi species 60961 531 1 971 1 species Shewanella baltica 62322 0 0 1 695 Shewanella japonica species 93973 0 578 1 Shewanella violacea species 60217 1 413 70864 Shewanella pealeana species 0 0 1 203 60478 species Shewanella amazonensis 278 1 species Shewanella oneidensis 70863 0 1 0 267888 24 family Pseudoalteromonadaceae 61836 25 1 0 355 Pseudoalteromonas genus 53246 24 61812 0 532 1 28107 Pseudoalteromonas espejiana species 0 1 1039 288 Pseudoalteromonas atlantica species 0 548 1 176102 Pseudoalteromonas agarivorans species 43662 species Pseudoalteromonas piscicida 421 1 0 0 228 species Pseudoalteromonas haloplanktis 570 1 0 194690 no rank 5 3796 1720343 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 724 1 0 0 581 1 Pseudoalteromonas sp. 13-15 species 1761891 0 717 1 Pseudoalteromonas sp. Bsw20308 species 283699 639 1 234831 species Pseudoalteromonas sp. SM9913 0 1 1135 1514074 Pseudoalteromonas sp. NC201 species 0 species Pseudoalteromonas nigrifaciens 28109 602 1 0 0 707 1 43657 Pseudoalteromonas luteoviolacea species 1 684 Pseudoalteromonas aliena species 247523 0 166935 species Pseudoalteromonas translucida 582 1 0 45156 1 Pseudoalteromonas spongiae species 298657 0 0 species Pseudoalteromonas issachenkonii 152297 614 1 0 43658 Pseudoalteromonas rubra species 349 1 394751 species Pseudoalteromonas arctica 607 1 0 species Pseudoalteromonas piratica 1348114 2652 1 0 507 1 267375 Pseudoalteromonas marina species 0 0 314281 Pseudoalteromonas tunicata species 1 750 161398 Pseudoalteromonas phenolica species 782 1 0 0 species Pseudoalteromonas tetraodonis 43659 1 559 1 0 2 Psychromonadaceae family 267894 1594 4 16 Psychromonas genus 67572 3 1592 1 0 0 2614957 no rank 1 699 species Psychromonas sp. CNPT3 314282 699 1 0 877 1 Psychromonas ingrahamii species 357794 0 1 0 39 order Cellvibrionales 1706369 8768 30 0 1 7 2047 family 35 Spongiibacteraceae 1706375 519 2 Spongiibacter 2 genus 630749 0 1 517 1 2631504 no rank 0 1620392 species Spongiibacter sp. IMCC21906 517 1 0 0 1 2 879 Oceanicoccus 8 genus 1084558 0 871 1 716816 species Oceanicoccus sagamiensis 0 1 2 614 genus 8 Zhongshania 1434050 0 606 1 1470434 Zhongshania aliphaticivorans species 0 1 5 1534 1706373 family 2 Microbulbiferaceae 23 Microbulbifer genus 48073 1532 4 1 0 species Microbulbifer thermotolerans 252514 1 499 0 533 1 1769779 species Microbulbifer aggregans 0 0 Microbulbifer agarilyticus species 260552 1 477 13 3688 family 17 Cellvibrionaceae 1706371 0 1 0 1 2 491 5 Teredinibacter genus 2425 1 486 2426 Teredinibacter turnerae species 0 1 0 9 genus Cellvibrio 10 1269 4 2 844 no rank 2624793 0 1 463 1945512 species Cellvibrio sp. PSBB023 0 1987723 Cellvibrio sp. PSBB006 species 1 381 0 Cellvibrio japonicus species 155077 416 1 0 1 0 447467 4 genus Simiduia 388 2 384 1 447471 species Simiduia agarivorans 0 1 0 316625 Saccharophagus 3 genus 618 2 0 Saccharophagus degradans species 86304 1 615 0 1 905 2 3 genus Agarilytica 2036021 0 Agarilytica rhodophyticola species 1737490 902 1 1 0 13 family Halieaceae 1706372 4 1460 1447 3 1217416 33 Halioglobus genus 0 1 930805 species Halioglobus japonicus 1 698 0 0 930806 species Halioglobus pacificus 1 716 21903 70 order 95 Oceanospirillales 135619 0 1 1 0 255527 10 Saccharospirillaceae family 935 4 1 440 230494 genus 0 1336806 Reinekea forsetii species 440 1 0 0 1 2 485 1445504 16 Gynuella genus Gynuella sunshinyii species 1445505 1 469 0 1 0 36 Alcanivoracaceae family 224372 9 5000 0 1 546 2 14 genus Ketobacter 2025617 532 1 1917421 Ketobacter alkanivorans species 0 1 0 59753 genus 94 Alcanivorax 4418 6 Alcanivorax borkumensis species 59754 1 1435 0 0 1 548 species Alcanivorax dieselolei 285091 1306787 Alcanivorax pacificus species 465 1 0 species Alcanivorax xenomutans 1094342 523 1 0 0 1 1353 no rank 2638842 0 Alcanivorax sp. NBRC 101098 species 1113728 1 1353 0 1 3 505 191033 12 Oleiphilaceae family 141450 2 Oleiphilus genus 2 493 1 0 Oleiphilus messinensis species 141451 1 491 0 13 4235 135620 21 Oceanospirillaceae family 0 1 1 0 8 genus Bacterioplanes 1537406 500 2 species Bacterioplanes sanyensis 1249553 1 492 0 0 1 497 2 2 genus Marinobacterium 48075 1 495 1821621 species Marinobacterium aestuarii 0 1 0 188907 1 genus Oleispira 2 592 0 188908 Oleispira antarctica species 591 1 4 1944 13 Marinomonas genus 28253 0 1 0 596 1 119864 species Marinomonas mediterranea 0 no rank 196814 832 1 400668 species Marinomonas sp. MWYL1 832 1 0 0 503 1 Marinomonas posidonica species 936476 0 1 2 681 187492 genus 4 Thalassolituus 677 1 species Thalassolituus oleivorans 187493 0 1 0 Halomonadaceae 65 family 28256 31 8784 1 0 1 Cobetia genus 204286 434 2 0 433 1 28258 Cobetia marina species 674 3 504090 8 genus Kushneria 0 1 0 1 314 Kushneria marisflavi species 157779 0 352 1 698828 species Kushneria konosiri 2 354 2 Salinicola genus 404432 0 1 0 352 1 species Salinicola tamaricis 1771309 0 1 2 374 5 genus Halotalea 376488 0 1 369 Halotalea alkalilenta species 376489 1 0 111 genus Halomonas 2745 15 4849 213554 species Halomonas campaniensis 1 315 0 Halomonas aestuarii species 1897729 1 453 0 8 2531 no rank 2609666 0 0 1 287 1504981 species Halomonas sp. KO116 Halomonas sp. GFAJ-1 species 1118153 227 1 0 271 1 species Halomonas sp. 'Soap Lake #6' 1949203 0 0 274 1 species Halomonas sp. 'Soap Lake #7' 1962264 0 415 1 species Halomonas sp. 1513 1883416 1 407 2136172 species Halomonas sp. SF2003 0 291 1 species Halomonas sp. R57-5 1610576 0 0 359 1 1971364 Halomonas sp. GT species 0 Halomonas huangheensis species 1178482 295 1 507626 species Halomonas chromatireducens 344 1 0 0 535 1 475662 species Halomonas beimenensis 115561 Halomonas hydrothermalis species 265 1 0 0 5 1661 no rank 114403 2 611 Candidatus Evansia 2 genus 1495768 0 1 0 species Candidatus Evansia muelleri 1495769 1 609 235572 Candidatus Portiera 2 genus 740 2 1 0 species Candidatus Portiera aleyrodidarum 91844 738 1 0 0 1 310 114185 genus 0 1 310 114186 Candidatus Carsonella ruddii species 0 genus 42054 1 373 373 1 species Chromohalobacter salexigens 158080 0 1 0 Kangiellaceae 4 family 1920240 1832 6 1 0 261963 48 Kangiella genus 1828 5 species Kangiella geojedonensis 914150 419 1 0 0 493 1 Kangiella sediminilitoris species 1144748 1561924 species Kangiella profundi 455 1 0 Kangiella koreensis species 261964 1 413 0 0 1 517 3 3 Hahellaceae family 224379 0 1 514 2 158481 Hahella 18 genus species Hahella chejuensis 158327 496 1 0 1 0 order 223 Enterobacterales 91347 87580 245 1903414 family 32 Morganellaceae 21 7556 1 0 0 1 1718 6 15 Xenorhabdus genus 626 0 351671 species Xenorhabdus doucetiae 1 293 351679 Xenorhabdus hominickii species 1 345 0 0 628 species Xenorhabdus nematophila 316 1 1 282 40577 Xenorhabdus poinarii species 0 467 1 40576 Xenorhabdus bovienii species 0 0 1 4 1311 29487 9 Photorhabdus genus Photorhabdus temperata species 574560 354 1 0 526 1 species Photorhabdus asymbiotica 291112 0 0 422 1 species Photorhabdus luminescens 29488 0 1 951 2 637 Arsenophonus 2 genus 1 949 634113 species Arsenophonus symbiont of Lipoptena fortisetosa 0 4 1420 5 genus Providencia 586 0 1 513 1 Providencia rettgeri species 587 0 1 543 Providencia stuartii species 588 0 species Providencia alcalifaciens 126385 359 1 0 0 291 1 genus 581 1 291 Morganella morganii species 582 0 0 1 1833 3 5 genus Proteus 583 0 585 species Proteus vulgaris 1 718 0 1 1110 Proteus mirabilis species 584 20 4241 1903410 Pectobacteriaceae 21 family 0 1 1 0 Brenneria 4 genus 71655 248 2 0 1109412 Brenneria goodwinii species 244 1 1 0 32 Sodalis genus 84565 5 932 0 198 1 1239307 species Sodalis praecaptivus 1 285 1929246 species Sodalis endosymbiont of Henestaris halophilus 0 0 1 216 Candidatus Sodalis pierantonius species 1486991 1 201 Sodalis glossinidius species 63612 0 1316 6 27 genus Dickeya 204037 0 1 0 1 185 species Dickeya fangzhongdai 1778540 species Dickeya dianthicola 204039 1 181 0 Dickeya dadantii species 204038 1 196 0 0 Dickeya zeae species 204042 1 388 species Dickeya solani 1089444 1 339 0 0 1 6 1724 122277 genus 31 Pectobacterium 0 1 187 55208 Pectobacterium wasabiae species 0 species Pectobacterium polaris 2042057 1 239 species Pectobacterium parmentieri 1905730 386 1 0 0 208 1 29471 species Pectobacterium atrosepticum 0 554 Pectobacterium carotovorum species 673 1 0 1 5564 14 1903412 17 family Hafniaceae 4652 8 635 54 genus Edwardsiella 0 1 0 1 283 1821960 Edwardsiella anguillarum species 0 1263550 Edwardsiella piscicida species 1 237 0 1 113 93378 Edwardsiella hoshinae species 0 species Edwardsiella tarda 636 3242 1 1 207 67780 Edwardsiella ictaluri species 0 0 2676541 no rank 516 2 0 260 1 1578828 Edwardsiella sp. EA181011 species 256 1 species Edwardsiella sp. LADL05-105 1650654 0 0 1 691 3 568 19 genus Hafnia no rank 2621980 1 177 0 177 1 species Hafnia sp. CBA7124 1848580 0 569 species Hafnia alvei 1 495 0 82982 Obesumbacterium 8 genus 204 2 1 0 82983 species Obesumbacterium proteus 1 196 0 17369 37 Yersiniaceae 29 family 1903411 0 1 0 1 2 236 2 Gibbsiella genus 929812 0 929813 Gibbsiella quercinecans species 1 234 genus 12 Rahnella 34037 4 638 1 0 0 437 2 2635087 no rank 188 1 species Rahnella sp. Y9602 741091 0 0 species Rouxiella sp. ERMR1:05 1805933 1 249 0 34038 species Rahnella aquatilis 1 189 16 4974 Serratia 189 genus 613 0 1 0 410 1 species Serratia plymuthica 82996 61651 species Serratia ficaria 1 188 0 0 1 1452 species Serratia marcescens 615 0 1648 8 2647522 no rank 768493 species Serratia sp. AS13 144 1 0 144 1 species Serratia sp. AS12 768490 0 671990 species Serratia sp. FGI94 163 1 0 0 1 310 species Serratia sp. SCBI 488142 0 194 1 Serratia sp. SSNIH1 species 1758196 0 Serratia sp. MYb239 species 2033438 1 186 1 229 104623 species Serratia sp. ATCC 39006 0 Serratia sp. FS14 species 1327989 1 278 0 0 1 146 species Serratia proteamaculans 28151 47917 Serratia fonticola species 446 1 0 0 1 305 614 species Serratia liquefaciens 61652 species Serratia rubidaea 190 1 0 13 11306 genus 89 Yersinia 629 0 1 0 1 240 29483 Yersinia aldovae species 631 species Yersinia intermedia 237 1 0 1 304 29485 Yersinia rohdei species 0 0 species group 1649845 3 1981 633 species Yersinia pseudotuberculosis 579 1 0 0 1 650 632 Yersinia pestis species 0 367190 Yersinia similis species 1 752 no rank 2653513 1 211 0 0 1 211 Yersinia sp. FDAARGOS_228 species 1839800 29484 species Yersinia frederiksenii 1 653 0 6166 1 species Yersinia ruckeri 29486 0 0 221 1 species Yersinia kristensenii 28152 1003 1 630 species Yersinia enterocolitica 0 201 1 263819 Yersinia aleksiciae species 0 1 186 1745211 genus 0 0 species Chania multitudinisentens 1639108 186 1 3 307 1903416 family 3 Budviciaceae 0 1 0 1 304 2 82984 10 genus Pragia 0 294 1 Pragia fontium species 82985 2 333 no rank 451511 0 genus 3 Plesiomonas 702 2 333 1 0 0 703 Plesiomonas shigelloides species 330 1 1903409 35 Erwiniaceae family 16758 28 1 0 0 1 2891 11 Pantoea 68 genus 53335 1 422 Pantoea vagans species 470934 0 0 567 3 no rank 2630326 1484158 Pantoea sp. PSNIH1 species 1 188 0 0 species Pantoea sp. PSNIH2 1484157 172 1 592316 species Pantoea sp. At-9b 1 207 0 0 1 343 1654067 species group 549 species Pantoea agglomerans 1 343 0 0 1 164 1891675 Pantoea alhagi species Candidatus Pantoea carbekii species 1235990 707 1 0 157 1 Pantoea rwandensis species 1076550 0 0 167 1 Pantoea stewartii species 66269 0 296 1 553 species Pantoea ananatis 2 218 82986 2 Tatumella genus 0 1 53336 species Tatumella citrea 216 1 0 51228 25 Wigglesworthia genus 2070 2 1 0 0 1 2045 51229 Wigglesworthia glossinidia species 8 1452 26 genus Erwinia 551 0 1 no rank 2622719 169 1 0 0 169 1 species Erwinia sp. Ejp617 215689 species Erwinia pyrifoliae 79967 1 173 0 1 141 338565 species Erwinia tasmaniensis 0 0 1 173 Erwinia amylovora species 552 Candidatus Erwinia sp. ErCipseudotaxifoliae species 1922217 362 1 0 241 1 Erwinia billingiae species 182337 0 0 1 167 1619313 species Erwinia gerundensis 0 373 2 2100764 genus 665914 Pantoea gaviniae species 1 148 0 0 665913 Pantoea calida species 225 1 0 1 2 9719 32199 genus 18 Buchnera 0 species Buchnera aphidicola 9 1 9701 119 35229 543 Enterobacteriaceae 239 family 0 1 0 1 3885 22 194 genus Enterobacter 547 0 species group 354276 2698 12 species Enterobacter asburiae 61645 1 329 0 0 208224 Enterobacter kobei species 1 95 0 1 93 Enterobacter cancerogenus species 69218 0 1120 1 Enterobacter cloacae species 550 107 1 species Enterobacter ludwigii 299767 0 Enterobacter cloacae complex 'Hoffmann cluster IV' species 1812935 92 1 0 0 251 3 no rank 2757714 0 1 94 2077137 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 species 0 1 75 species Enterobacter cloacae complex bacterium 2027919 0 Enterobacter cloacae complex sp. ECNIH7 species 1915310 82 1 0 1 611 3 158836 406 Enterobacter hormaechei species 0 1812934 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 115 1 0 1 90 Enterobacter xiangfangensis subspecies 1296536 0 no rank 2608935 993 9 0 399742 Enterobacter sp. 638 species 1 142 0 species Enterobacter sp. Crenshaw 1977566 1 82 70 1 species Enterobacter sp. E20 1560339 0 1 58 Enterobacter sp. HK169 species 1868135 0 0 species Enterobacter sp. R4-368 1166130 1 155 species Enterobacter sp. SA187 1914861 152 1 0 0 Enterobacter sp. FY-07 species 1692238 1 147 1 90 1827481 species Enterobacter sp. ODB01 0 0 1 97 2051905 species Enterobacter sp. CRENT-193 2 493 158483 1 Cedecea genus 0 1 0 Cedecea neteri species 158822 492 1 1 0 413496 26 genus Cronobacter 8 1188 129 1 413501 species Cronobacter muytjensii 0 1 131 species Cronobacter dublinensis 413497 0 535744 species Cronobacter universalis 1 181 0 1163710 Cronobacter condimenti species 151 1 0 0 280 1 species Cronobacter sakazakii 28141 1 135 413503 species Cronobacter malonaticus 0 0 species Cronobacter turicensis 413502 155 1 1 186 579 genus 0 0 61648 Kluyvera intermedia species 186 1 4 genus Candidatus Riesia 401618 2 561 1 0 557 1 Candidatus Riesia pediculicola species 401619 0 0 1 5 4375 561 13 genus Escherichia 0 1 3825 Escherichia coli species 562 1 123 species Escherichia fergusonii 564 0 species Escherichia marmotae 1499973 1 129 0 285 1 208962 Escherichia albertii species 0 620 8 Shigella genus 250 4 1 0 0 104 1 species Shigella dysenteriae 622 1 75 2629414 no rank 0 0 Shigella sp. PAMC 28760 species 1813821 75 1 species Shigella flexneri 623 1 63 0 500 3 1330546 2 genus Pluralibacter 0 1 Pluralibacter gergoviae species 61647 294 1 0 1 204 1334193 species [Enterobacter] lignolyticus 0 590 14 genus Salmonella 3 3229 1 0 0 species Salmonella bongori 54736 247 1 2968 1 Salmonella enterica species 28901 0 0 1 130 1335483 genus 0 130 1 species Shimwellia blattae 563 1 141 1048757 genus 0 1048758 Candidatus Moranella endobia species 141 1 0 1047 5 no rank 36866 0 0 1 146 Enterobacteriaceae bacterium ENNIH2 species 1920109 0 2066051 species Enterobacteriaceae bacterium ENNIH1 163 1 0 693444 Enterobacteriaceae bacterium strain FGI 57 species 1 143 0 1920128 species Enterobacteriaceae bacterium ENNIH3 1 159 0 1 436 species Plautia stali symbiont 891974 10 5487 genus 103 Klebsiella 570 0 1 2 307 2608929 no rank 0 1 152 1905288 Klebsiella sp. LTGPAF-6F species 0 155 1 1934254 species Klebsiella sp. M5al 0 Klebsiella oxytoca species 571 1 745 0 0 Klebsiella quasipneumoniae species 1463165 228 1 435 1 species Klebsiella michiganensis 1134687 0 1 191 2026240 Klebsiella quasivariicola species 0 0 929 1 548 species Klebsiella aerogenes 0 2181 1 Klebsiella pneumoniae species 573 0 244366 species Klebsiella variicola 1 368 0 1 712 5 1330547 Kosakonia 21 genus 0 species Kosakonia oryzae 497725 191 1 Kosakonia radicincitans species 283686 196 1 0 Kosakonia cowanii species 208223 1 135 0 0 169 1 1158459 species Kosakonia sacchari 0 1 4 466 13 Leclercia genus 83654 no rank 2627398 291 2 0 0 133 1 species Leclercia sp. LSNIH1 1920114 0 species Leclercia sp. LSNIH3 1920116 1 158 0 species Leclercia adecarboxylata 83655 162 1 1 0 160674 genus 3 Raoultella 3 605 species Raoultella planticola 575 1 184 0 0 1 418 species Raoultella ornithinolytica 54291 1 0 544 125 Citrobacter genus 3169 14 0 2644389 no rank 2 255 0 species Citrobacter sp. CFNIH10 1920110 132 1 0 Citrobacter sp. FDAARGOS_156 species 1702170 123 1 1344959 species group 1818 7 0 0 1 118 2066049 Citrobacter freundii complex sp. CFNIH2 species 1 137 species Citrobacter freundii complex sp. CFNIH4 2077148 0 255 1 67827 species Citrobacter werkmanii 0 0 Citrobacter freundii species 546 759 1 0 1 125 Citrobacter freundii complex sp. CFNIH3 species 2077147 0 2077149 Citrobacter freundii complex sp. CFNIH9 species 1 146 0 1 278 57706 Citrobacter braakii species 130 1 67825 Citrobacter rodentium species 0 Citrobacter farmeri species 67824 1 315 0 1 189 545 Citrobacter koseri species 0 0 35703 species Citrobacter amalonaticus 337 1 1 0 409304 2 genus Candidatus Ishikawaella 2 828 Candidatus Ishikawaella capsulata species 168169 1 826 0 0 1 4 574 1330545 1 genus Lelliottia 0 1 281 species Lelliottia amnigena 61646 1 149 1907578 species Lelliottia jeotgali 0 0 1 143 species Lelliottia nimipressuralis 69220 19 7164 no rank 191675 0 7164 19 clade 84563 0 0 1 376 clade 199891 0 376 1 1835721 species secondary endosymbiont of Trabutina mannipara genus 1906657 117 1 0 1 117 1778262 Candidatus Doolittlea endobia species 0 146507 clade 4 1023 0 134287 species secondary endosymbiont of Heteropsylla cubana 1 468 0 2 387 568987 7 genus Candidatus Hamiltonella 0 1 0 380 1 Candidatus Hamiltonella defensa species 138072 0 1 168 1199245 secondary endosymbiont of Ctenarytaina eucalypti species 1 0 1682492 1 Candidatus Tachikawaea genus 2 1033 0 1 1032 species Candidatus Tachikawaea gelatinosa 1410383 genus 1906660 482 1 0 0 1778264 Candidatus Mikella endobia species 1 482 139 1 genus 1906659 0 1778263 species Candidatus Hoaglandella endobia 139 1 0 clade 84564 3636 7 0 1 0 203804 Candidatus Blochmannia 35 genus 3636 7 2 1267 no rank 711328 0 0 1 771 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus species 1505597 0 496 1 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 1505596 species Candidatus Blochmannia chromaiodes 251542 1 532 0 0 101534 Candidatus Blochmannia pennsylvanicus species 523 1 666 1 Candidatus Blochmannia vafer species 251535 0 0 613 1 203907 species Candidatus Blochmannia floridanus 0 1 358 2 1906661 1 Candidatus Gullanella genus 1070130 species Candidatus Gullanella endobia 357 1 0 1240482 2 Orbales order 6 1970 1 0 1 0 1240483 family 6 Orbaceae 5 1968 2 846 1335631 5 genus Frischella 0 1 0 Frischella perrara species 1267021 841 1 1 0 2 genus Gilliamella 1193503 1116 2 0 1114 1 1196095 species Gilliamella apicola 1 0 1775403 14 order Nevskiales 331 4 1 6 Sinobacteraceae family 568386 0 0 311 2 2689614 family 2 311 22 genus Steroidobacter 469322 0 1 0 289 1 Steroidobacter denitrificans species 465721 118884 no rank 9463 14 0 0 1 1369 198346 clade 1 1369 species Candidatus Baumannia cicadellinicola 186490 0 0 1 432 2 349742 Sedimenticola 9 genus 1543721 Sedimenticola thiotaurini species 1 423 0 1 0 genus 29 Candidatus Thioglobus 655184 2525 3 0 784 1 species Candidatus Thioglobus autotrophicus 1705394 0 species Candidatus Thioglobus singularis 1427364 1712 1 1 0 1608298 genus 7 Thiolapillus 272 2 1 265 Thiolapillus brandeum species 1076588 0 0 1 466 2 genus 2 Pseudohongiella 1524249 0 1249552 species Pseudohongiella spirulinae 1 464 4 4399 32036 clade 0 0 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont species 1 666 0 species Calyptogena okutanii thioautotrophic gill symbiont 410330 1 1190 0 1 2 2543 1541743 10 Candidatus Ruthia genus 2533 1 species Candidatus Ruthia magnifica 386487 0 1 0 class 364 Alphaproteobacteria 28211 565 431994 0 1 194048 9 25 order Pelagibacterales 54526 12757 2 2045213 Candidatus Fonsibacter 32 genus 0 1 12725 1 Candidatus Fonsibacter ubiquis species 1925548 0 1655514 Pelagibacteraceae 55 family 181266 6 1 0 1655516 no rank 2 101174 0 744985 species alpha proteobacterium HIMB59 1 10291 0 1 90883 alpha proteobacterium HIMB5 species 859653 0 1 0 198251 22 Candidatus Pelagibacter genus 80037 3 0 68355 1 Candidatus Pelagibacter ubique species 198252 11660 1 2647897 no rank 0 0 Candidatus Pelagibacter sp. IMCC9063 species 1002672 11660 1 4991 8 no rank 82117 0 0 1 2 652 1632780 genus 18 Phreatobacter 0 634 1 Phreatobacter sp. S-12 species 1868589 0 1 566 2 213485 Micavibrio 6 genus Micavibrio aeruginosavorus species 349221 560 1 0 1 0 991903 genus 40 Polymorphum 793 2 0 991904 species Polymorphum gilvum 753 1 2 2980 62654 clade 0 2980 2 767891 26 genus Candidatus Puniceispirillum 0 1 0 1 2954 species Candidatus Puniceispirillum marinum 767892 0 1 56 28315 42 Rickettsiales order 766 3 832 4 family Candidatus Midichloriaceae 1328881 0 1 828 2 411566 genus 10 Candidatus Midichloria 0 1 234827 species Candidatus Midichloria mitochondrii 818 1 0 28 11234 17 Rickettsiaceae family 775 0 1 33988 tribe 25 10431 0 1 0 757 genus Rickettsia 780 23 8785 species group 1129742 2 1698 0 0 33990 species Rickettsia bellii 1 1052 0 788 Rickettsia canadensis species 1 646 0 species group 114277 3199 17 Rickettsia rickettsii species 783 107 1 0 0 33989 species Rickettsia amblyommatis 1 171 1 87 35790 Rickettsia japonica species 0 0 1 274 47589 Rickettsia peacockii species 787 Rickettsia australis species 587 1 0 0 781 Rickettsia conorii species 70 1 226665 species Rickettsia heilongjiangensis 1 84 0 Rickettsia montanensis species 33991 90 1 0 0 35794 species Rickettsia slovaca 32 1 1 93 35791 species Rickettsia massiliae 0 0 1 54 35792 Rickettsia parkeri species species Rickettsia rhipicephali 33992 121 1 0 75 1 Rickettsia philipii species 1105106 0 Rickettsia akari species 786 366 1 0 42862 Rickettsia felis species 515 1 0 0 413 1 species Rickettsia monacensis 109232 0 1 60 Rickettsia africae species 35788 0 996 1 114295 no rank 0 species Rickettsia endosymbiont of Bemisia tabaci 337479 1 996 114292 species group 2135 2 0 0 785 species Rickettsia typhi 1042 1 0 1093 1 782 species Rickettsia prowazekii 0 1 1646 2 69474 1 genus Orientia 0 1 1645 species Orientia tsutsugamushi 784 0 1 2 786 2115980 2 Candidatus Phycorickettsia genus 2115978 Candidatus Phycorickettsia trachydisci species 1 784 0 0 1699067 no rank 1 1938 0 1938 1 Rickettsiales bacterium Ac37b species 1528098 0 1 23 14269 family 23 Anaplasmataceae 942 0 1 4 592 9 genus Anaplasma 768 1 153 species Anaplasma marginale 770 0 species group 106179 274 1 0 274 1 948 species Anaplasma phagocytophilum 0 769 species Anaplasma centrale 156 1 0 1 0 12 Neorickettsia genus 33993 1089 4 1 336 951 species Neorickettsia sennetsu 0 0 1 344 33994 species Neorickettsia helminthoeca 950 species Neorickettsia risticii 1 397 0 0 6193 8 952 tribe 1 0 137 genus Wolbachia 953 8 6193 2640676 no rank 6056 7 0 0 66084 species Wolbachia sp. wRi 1 750 1 739 100901 species Wolbachia endosymbiont of Onchocerca ochengi 0 1 792 species Wolbachia endosymbiont of Brugia malayi 80849 0 1 1705 77038 Wolbachia endosymbiont of Drosophila simulans species 0 246273 species Wolbachia endosymbiont of Cimex lectularius 614 1 0 0 1 738 Wolbachia endosymbiont of Onchocerca volvulus species 77551 718 1 Wolbachia endosymbiont of Drosophila melanogaster species 163164 0 1 0 943 Ehrlichia 45 genus 6372 6 0 1 1201 106181 no rank 0 391036 Ehrlichia sp. HF species 1 1201 106178 species group 5126 4 0 0 1 1165 Ehrlichia chaffeensis species 945 944 species Ehrlichia canis 1 1344 0 0 species Ehrlichia ruminantium 779 1487 1 0 1 1130 Ehrlichia muris species 35795 0 1 82 36382 145 order Sphingomonadales 204457 1 0 103 family Erythrobacteraceae 335929 22 13679 0 genus 1855416 2 5327 266951 Erythrobacter seohaensis species 1 709 0 Erythrobacter flavus species 192812 1 4618 0 502 1 2800685 genus 0 502 1 543877 species Altererythrobacter marensis 0 0 1 1234 4 361177 109 genus Altererythrobacter 0 1 265 Altererythrobacter ishigakiensis species 476157 0 Altererythrobacter epoxidivorans species 361183 1 500 0 1267766 species Altererythrobacter atlanticus 360 1 genus 2800682 1 512 0 0 species Altererythrobacter namhicola 645517 1 512 3 1124 Croceicoccus 32 genus 1295327 0 1 0 Croceicoccus naphthovorans species 1348774 366 1 0 1 726 Croceicoccus marinus species 450378 2860 6 2800788 no rank 0 1 0 Porphyrobacter 64 genus 1111 1019 3 0 2683265 no rank 955 2 0 1 469 Porphyrobacter HT-58-2 species 2023229 1896196 Porphyrobacter sp. LM 6 species 486 1 0 3 1841 1041 110 Erythrobacter genus 0 1 1112 species Porphyrobacter neustonensis 1 484 0 species Erythrobacter litoralis 39960 1247 1 0 genus 2800681 1184 2 0 1648404 species Erythrobacter atlanticus 1 706 0 502682 Erythrobacter gangjinensis species 1 478 0 0 genus 2800686 2 833 0 1982042 species Altererythrobacter mangrovi 1 398 1 435 Altererythrobacter dongtanensis species 692370 0 41297 271 family Sphingomonadaceae 22558 59 1 0 0 genus 2685927 1 326 0 1921510 species Sphingomonas sp. JJ-A5 326 1 2 genus Blastomonas 150203 2 436 1 0 no rank 2626550 1 434 0 1 434 Blastomonas sp. RAC04 species 1842535 0 665 2 72173 6 Citromicrobium genus 0 1 1 659 2630544 no rank 0 1 659 species Citromicrobium sp. JL477 1634516 0 5 1904 genus 41 Novosphingobium 165696 0 1 0 414 1 2644732 no rank 0 414 1 702113 species Novosphingobium sp. PP1Y 0 158500 Novosphingobium resinovorum species 1 519 0 205844 species Novosphingobium pentaromativorans 1 525 0 Novosphingobium aromaticivorans species 48935 1 405 0 362 1 genus 2709685 0 species Sphingorhabdus flavimaris 266812 1 362 8 genus Rhizorhabdus 1649486 2 519 1 0 species Rhizorhabdus dicambivorans 1850238 1 511 0 0 1 845 3 22 genus Sphingorhabdus 1434046 no rank 2614947 823 2 0 0 394 1 1806885 species Sphingorhabdus sp. M41 1 429 species Sphingorhabdus sp. YGSMI21 2077182 0 13687 180 Sphingomonas genus 15 7351 1 0 1 435 Sphingomonas melonis species 152682 0 0 1 433 93064 species Sphingomonas koreensis 1 472 Sphingomonas hengshuiensis species 1609977 0 1 458 Sphingomonas taxi species 1549858 0 0 no rank 196159 3016 6 374 1 species Sphingomonas sp. KC8 1030157 0 0 1 421 Sphingomonas sp. MM-1 species 745310 0 1938607 species Sphingomonas sp. LM7 346 1 0 1 421 species Sphingomonas sp. Cra20 1327635 0 1 415 1961362 species Sphingomonas sp. NIC1 0 1039 1 1390395 Sphingomonas sp. LK11 species 1316 2 160791 655 Sphingomonas wittichii species 0 1 0 1283312 Sphingomonas sp. DC-6 strain 1 661 0 392 1 1560345 species Sphingomonas panacis 649 1 397260 species Sphingomonas sanxanigenens 0 2 802 541 Zymomonas 1 genus 0 1 species Zymomonas mobilis 542 1 801 0 0 1 15 4765 214 Sphingobium genus 165695 1 536 Sphingobium yanoikuyae species 13690 0 0 236 1 76947 species Sphingobium herbicidovorans 0 species Sphingobium japonicum 332056 352 1 356 1 46429 species Sphingobium chlorophenolicum 0 332055 Sphingobium indicum species 1 275 0 328 1 species Sphingobium cloacae 120107 0 1920 6 no rank 2611147 0 1 338 Sphingobium sp. SYK-6 species 627192 0 species Sphingobium sp. MI1205 407020 288 1 0 355 1 Sphingobium sp. YBL2 species 484429 0 0 Sphingobium sp. TKS species 1315974 333 1 1 260 1855519 Sphingobium sp. EP60837 species 0 species Sphingobium sp. RAC03 1843368 346 1 0 0 1673076 Sphingobium hydrophobicum species 280 1 268 1 1332080 species Sphingobium baderi 0 1 0 165697 genus 91 Sphingopyxis 10 4312 351 1 species Sphingopyxis fribergensis 1515612 0 0 33052 Sphingopyxis terrae species 1 387 0 343 1 species Sphingopyxis alaskensis 117207 2614943 no rank 1794 4 0 1 355 1866325 Sphingopyxis sp. MG species 0 332 1 Sphingopyxis sp. 113P3 species 292913 0 1357916 species Sphingopyxis sp. QXT-31 1 492 0 0 615 1 1913578 species Sphingopyxis sp. LPB0140 1 796 33050 species Sphingopyxis macrogoltabida 0 267128 Sphingopyxis granuli species 550 1 0 0 1 89 39974 204455 123 Rhodobacterales order 0 1 39851 88 31989 family 565 Rhodobacteraceae 302485 61 genus Phaeobacter 4399 5 1 0 395 1 1844006 species Phaeobacter porticola 0 0 species Phaeobacter piscinae 1580596 1 1054 221822 Phaeobacter inhibens species 1 1604 0 0 60890 Phaeobacter gallaeciensis species 1 1285 795 1 genus 58842 0 1 795 2624628 no rank 0 0 species Sagittula sp. P11 2009329 1 795 1748 4 62 genus Labrenzia 478070 0 1 1161 2 no rank 2648686 0 0 1 496 Labrenzia sp. CP4 species 1674922 0 2021862 species Labrenzia sp. VG12 665 1 0 Labrenzia aggregata species 187304 525 1 Loktanella genus 245186 4 1 0 5 genus Ketogulonicigenium 92944 667 3 1 0 0 92945 species Ketogulonicigenium vulgare 1 364 0 1 298 species Ketogulonicigenium robustum 92947 0 1 3 436357 genus Thalassococcus 0 1 548 2 1579315 1 Halocynthiibacter genus 0 1579316 species Halocynthiibacter arcticus 547 1 0 1 2 683 1 Roseibacterium genus 159345 Roseibacterium elongatum species 159346 1 682 0 3 1151 2433 8 Roseobacter genus 0 1 0 species Roseobacter litoralis 42443 570 1 0 1 573 2434 Roseobacter denitrificans species 2 892 no rank 58840 0 0 Rhodobacteraceae bacterium QY30 species 2033435 1 422 1 470 Rhodobacteraceae bacterium species 1904441 0 1 702 1284657 genus 0 702 1 1284658 Planktomarina temperata species 0 2 genus Jannaschia 188905 2 512 1 0 2645469 no rank 510 1 0 0 species Jannaschia sp. CCS1 290400 1 510 0 1 602 2 299261 6 genus Tateyamaria 0 299262 species Tateyamaria omphalii 596 1 6 Defluviimonas genus 1097466 2 677 1 0 Defluviimonas alba species 1335048 1 671 0 0 genus 119541 1 437 0 441209 Rhodobaca barguzinensis species 1 437 3 1286 14 genus Ruegeria 97050 0 1 no rank 2625375 1 438 0 292414 Ruegeria sp. TM1040 species 438 1 0 species Ruegeria pomeroyi 89184 1 834 0 60136 9 genus Sulfitobacter 3 1664 1 0 722 1 Sulfitobacter pseudonitzschiae species 1402135 0 0 196795 no rank 933 1 0 1 933 Sulfitobacter sp. AM1-D1 species 1917485 1 0 Celeribacter 23 genus 875170 2248 5 0 601 1 species Celeribacter manganoxidans 1411902 1208324 Celeribacter indicus species 1 733 0 0 species Celeribacter marinus 1397108 1 409 0 482 1 1758178 Celeribacter ethanolicus species 1 0 1759396 6 genus Marivivens 2 358 no rank 2622455 352 1 0 0 352 1 1920883 Marivivens sp. JLT3646 species 2211641 genus 1 611 0 611 1 Loktanella vestfoldensis species 245188 0 9 4378 265 66 Paracoccus genus 0 1 0 147645 species Paracoccus yeei 737 1 0 1 438 Paracoccus aminophilus species 34003 0 1 581 266 species Paracoccus denitrificans 1 508 34004 species Paracoccus aminovorans 0 0 423 1 1945662 species Paracoccus contaminans Paracoccus sp. CBA4604 species 2065379 521 1 0 246570 no rank 1 559 0 1529068 species Paracoccus sp. BM15 559 1 0 0 1077935 species Paracoccus zhejiangensis 545 1 1 0 genus 5 Confluentimicrobium 1609958 2 676 0 1 671 2643318 no rank 1 671 species Confluentimicrobium sp. EMB200-NS6 1609966 0 0 1 922 2 367771 genus 4 Marinovum species Marinovum algicola 42444 918 1 0 4 2429 genus 38 Rhodovulum 34008 0 1 35806 species Rhodovulum sulfidophilum 1 1033 0 0 2 1358 2631432 no rank 0 626 1 1564506 Rhodovulum sp. P5 species 0 732 1 Rhodovulum sp. MB263 species 308754 0 1 495 285107 genus species Thioclava nitratireducens 1915078 495 1 0 0 genus 1649279 1 473 0 473 1 379347 species Ruegeria mobilis 2 859 4 genus Pelagibaca 360528 0 1 0 1250539 Pelagibaca abyssi species 855 1 568 2 74030 1 genus Roseovarius 0 1 0 1 567 species Roseovarius mucosus 215743 0 1 2 685 8 Leisingera genus 191028 0 1 677 Leisingera methylohalidivorans species 133924 597 2 1 genus Antarctobacter 74032 0 1 1 596 Antarctobacter heliothermus species 74033 0 53945 12 Octadecabacter genus 1379 4 1 0 484 1 Octadecabacter arcticus species 53946 0 0 Octadecabacter temperatus species 1458307 436 1 0 447 1 1217908 Octadecabacter antarcticus species 643 2 227873 Pannonibacter 23 genus 0 1 0 620 1 121719 species Pannonibacter phragmitetus 2 1544 263377 genus 0 1229727 Thiobacimonas profunda species 1 718 0 826 1 no rank 2640570 0 species Yangia sp. CCB-MM3 1792508 826 1 0 0 674 1 309512 genus 1 674 215813 species Dinoroseobacter shibae 0 5 2977 1060 Rhodobacter 32 genus 0 1 0 196779 no rank 2 1081 1 561 2033869 Rhodobacter sp. CZR27 species 0 0 520 1 1850250 Rhodobacter sp. LPB0142 species 0 Rhodobacter sphaeroides species 1063 1 1339 0 Rhodobacter capsulatus species 1061 525 1 2800060 order 6 2117 0 69657 family 31 Hyphomonadaceae 2117 6 1 0 3 1080 85 Hyphomonas 42 genus 0 1 0 no rank 2630699 1 629 629 1 1906738 Hyphomonas sp. Mor2 species 0 1 409 81032 Hyphomonas neptunium species 0 17 Hirschia genus 2723 2 1006 1 0 0 1 989 Hirschia baltica species 2724 0 1 661 4 255473 1 Parvularculales order 1 0 Parvularculaceae 15 family 255474 660 3 645 2 208215 20 Parvularcula genus 0 1 208216 species Parvularcula bermudensis 625 1 0 0 1 302 3 3 order Magnetococcales 1191478 299 2 1191479 family 0 1 0 162171 1 genus Magnetococcus 299 2 0 298 1 species Magnetococcus marinus 1124597 0 order 2800059 2 527 family 2800061 2 527 0 31 Maricaulis genus 74317 527 2 1 0 74318 species Maricaulis maris 496 1 0 204458 Caulobacterales 20 order 20 6244 1 0 0 1 19 6224 76892 family 153 Caulobacteraceae 0 1 2 391 76890 10 Asticcacaulis genus species Asticcacaulis excentricus 78587 1 381 0 1989 7 41275 genus 134 Brevundimonas 0 1 330 1 species Brevundimonas subvibrioides 74313 0 1 283 species Brevundimonas vesicularis 41276 0 0 588932 species Brevundimonas naejangsanensis 1 277 2622653 no rank 965 3 0 0 Brevundimonas sp. DS20 species 1532555 1 281 1 256 1827469 species Brevundimonas sp. GW460-12-10-14-LB2 0 Brevundimonas sp. LM2 species 1938605 428 1 0 0 350 1 81440 no rank 0 1 350 1759059 species Caulobacteraceae bacterium OTSz_A_272 0 1 2 543 3 Phenylobacterium genus 20 0 1 540 284016 species Phenylobacterium zucineum 6 2798 69 genus Caulobacter 75 0 1 0 1 523 Caulobacter mirabilis species 69666 1 494 88688 Caulobacter segnis species 0 species Caulobacter vibrioides 155892 1 802 0 0 2648921 no rank 552 1 1 552 Caulobacter sp. K31 species 366602 0 358 1 69395 Caulobacter henricii species 0 1 0 204441 order 113 Rhodospirillales 66 25077 78 family Acetobacteraceae 433 35 8531 1 0 3 1128 28 Acidiphilium genus 522 0 1 species Acidiphilium multivorum 62140 574 1 0 0 1 526 524 species Acidiphilium cryptum 431 2 89583 7 Gluconacetobacter genus 0 1 33996 Gluconacetobacter diazotrophicus species 1 424 0 1602345 2 Parasaccharibacter genus 147 2 1 0 0 145 1 Parasaccharibacter apium species 1510841 0 1 221 2 6 Asaia genus 91914 91915 species Asaia bogorensis 215 1 0 31 genus Roseomonas 125216 3 1196 1 0 1 579 no rank 2617492 0 0 Roseomonas sp. FDAARGOS_362 species 2018065 1 579 1 586 257708 species Roseomonas gilardii 0 0 1 8 2408 434 34 genus Acetobacter 0 1 205 446692 species Acetobacter senegalensis 1 221 subgenus 151157 0 0 435 species Acetobacter aceti 221 1 1 958 species Acetobacter pasteurianus 438 0 0 252 1 65959 Acetobacter pomorum species species Acetobacter tropicalis 104102 1 256 0 0 210 1 1076596 Acetobacter persici species 0 272 1 Acetobacter oryzifermentans species 1633874 0 1 5 1366 1434011 Komagataeibacter 36 genus 0 1 529 Komagataeibacter xylinus species 28448 0 Komagataeibacter medellinensis species 1177712 1 221 1 225 33995 species Komagataeibacter europaeus 0 0 355 1 Komagataeibacter nataicola species 265960 3 536 441 Gluconobacter 5 genus 0 1 Gluconobacter albidus species 318683 168 1 0 363 1 species Gluconobacter oxydans 442 0 0 1 2 298 153497 genus 6 Kozakia 0 species Kozakia baliensis 153496 1 292 0 1 511 2 364409 genus 4 Granulibacter 0 species Granulibacter bethesdensis 364410 1 507 0 1 2 211 320496 3 Neoasaia genus 320497 species Neoasaia chiangmaiensis 1 208 0 16433 30 Rhodospirillaceae 260 family 41295 0 1 1 0 16 Tistrella genus 171436 2 901 1 885 species Tistrella mobilis 171437 0 1 0 4 Haematospirillum genus 1804663 2 369 365 1 1549855 species Haematospirillum jordaniae 0 1543704 10 Niveispirillum genus 2 557 1 0 0 1 547 Niveispirillum cyanobacteriorum species 1612173 1263978 genus 1843 1 0 0 1263979 species Candidatus Endolissoclinum faulkneri 1 1843 13134 Magnetospirillum 128 genus 3070 5 1 0 631 1 84159 species Magnetospirillum magneticum 0 55518 Magnetospirillum gryphiswaldense species 1 872 0 0 1439 2 no rank 2617991 692 1 species Magnetospirillum sp. XM-1 1663591 0 0 1 747 Magnetospirillum sp. ME-1 species 1639348 0 1 399 2 4 Pararhodospirillum genus 1612157 395 1 species Pararhodospirillum photometricum 1084 0 1 0 168934 24 Thalassospira genus 3 1331 0 species Thalassospira sp. CSC3H3 2048283 1 670 637 1 220697 species Thalassospira xiamenensis 0 1 0 genus 9 Nitrospirillum 1543705 837 2 0 species Nitrospirillum amazonense 28077 828 1 1 0 6 Magnetospira genus 1182780 588 2 2685734 no rank 582 1 0 0 1 582 1288970 Magnetospira sp. QH-2 species 22 genus Rhodospirillum 1081 1344 3 1 0 0 34018 species Rhodospirillum centenum 719 1 0 Rhodospirillum rubrum species 1085 1 603 191 144 Azospirillum genus 4934 5 1 0 0 1 1531 192 species Azospirillum brasilense Azospirillum humicireducens species 1226968 1 541 0 species Azospirillum lipoferum 193 1 1752 0 1 966 528244 species Azospirillum thiophilum 0 0 1 90332 210 Rhizobiales 583 order 356 18 17875 772 22 family Bartonellaceae 0 1 1 0 773 436 Bartonella genus 17853 17 0 1686310 species Bartonella apis 1 950 0 1 1256 species Bartonella clarridgeiae 56426 0 Bartonella quintana species 803 1 799 0 1 1011 38323 species Bartonella henselae 1 1040 33047 Bartonella vinsonii species 0 0 Bartonella ancashensis species 1318743 1 1064 0 species Bartonella grahamii 33045 1106 1 1 1122 774 Bartonella bacilliformis species 0 Bartonella australis species 388640 1 595 0 7494 6 2645622 no rank 0 1365 1 species Bartonella sp. JB15 1933906 0 0 1933912 species Bartonella sp. Raccoon60 1156 1 Bartonella sp. 1-1C species 515256 1 1126 0 0 1296 1 species Bartonella sp. WD16.2 1933904 0 1933910 Bartonella sp. A1379B species 1 1187 1 1364 1933907 Bartonella sp. JB63 species 0 0 85701 Bartonella tribocorum species 1 980 82115 family 181 Rhizobiaceae 24034 53 1 0 13880 34 227290 no rank 0 697 2 1525371 genus 11 Neorhizobium 0 1 399 Neorhizobium galegae species 686 1 0 1 0 379 612 genus Rhizobium 9727 25 0 620 1 56730 species Rhizobium gallicum 0 1 2282 species Rhizobium leguminosarum 384 1 1116 29449 Rhizobium etli species 0 344 1 398 Rhizobium tropici species 0 Rhizobium phaseoli species 396 769 1 0 2613769 no rank 3984 19 0 0 1703962 Rhizobium sp. N1341 species 6 1 0 119 1 2020313 species Rhizobium sp. TAL182 305 1 species Rhizobium sp. IRBG74 424182 0 0 1 4 1703960 Rhizobium sp. N113 species 0 2020311 Rhizobium sp. Kim5 species 1 237 0 Rhizobium sp. NXC24 species 2048897 1 375 385 1 2028343 Rhizobium sp. 10195 species 0 0 51 1 1703961 species Rhizobium sp. N1314 51 1 Rhizobium sp. N731 species 1703966 0 0 1 330 Rhizobium sp. N324 species 1703969 1 332 1125847 species Rhizobium sp. NT-26 0 1 263 1981173 Rhizobium sp. NXC14 species 0 388 1 1571470 species Rhizobium sp. ACO-34A 0 0 Rhizobium sp. S41 species 1869170 1 295 0 292 1 Rhizobium sp. CIAT894 species 2020312 1301032 Rhizobium sp. IE4771 species 1 257 0 1703967 species Rhizobium sp. N741 5 1 0 0 Rhizobium sp. N871 species 1703968 1 2 1 287 1914541 Rhizobium sp. Y9 species 0 7 3456 78 Agrobacterium genus 357 0 1 1958 2 1183400 species group 0 0 1577 1 species Agrobacterium tumefaciens 358 1176649 Agrobacterium fabrum species 1 381 0 339 1 species Agrobacterium rhizogenes 359 0 no rank 2632611 693 2 0 0 1 401 species Agrobacterium sp. RAC06 1842536 0 species Agrobacterium sp. H13-3 861208 1 292 0 373 species Agrobacterium vitis 1 388 10 4874 227292 no rank 0 92 genus Sinorhizobium 28105 3938 7 1 0 0 110321 species Sinorhizobium medicae 1 418 0 942 2 no rank 2613772 1 410 species Sinorhizobium sp. CCBAU 05631 794846 0 532 1 Sinorhizobium sp. RAC02 species 1842534 0 1155 1 663276 species group 0 380 Sinorhizobium fredii species 1155 1 0 0 194963 Sinorhizobium americanum species 470 1 0 861 1 382 Sinorhizobium meliloti species 0 1 3 936 106591 8 Ensifer genus 1 541 106592 species Ensifer adhaerens 0 0 387 1 716925 Ensifer sojae species 323620 7 genus Shinella 636 2 1 0 2643062 no rank 1 629 0 0 629 1 Shinella sp. HZN7 species 879274 34019 79 genus Liberibacter 6 4463 1 0 1 1032 1273132 species Liberibacter crescens 0 0 34021 Candidatus Liberibacter asiaticus species 1 721 794 1 34020 Candidatus Liberibacter africanus species 0 309868 species Candidatus Liberibacter americanus 1000 1 0 0 837 1 556287 species Candidatus Liberibacter solanacearum 1 0 Hyphomicrobiaceae 54 family 45401 5065 19 2 486 59282 Blastochloris 19 genus 0 1 467 1 1079 species Blastochloris viridis 0 0 1 413 2 119044 4 Filomicrobium genus 1608628 species Candidatus Filomicrobium marinum 1 409 0 1193 4 74 genus Hyphomicrobium 81 0 1 0 1 290 species Hyphomicrobium nitrativorans 1427356 0 53399 species Hyphomicrobium denitrificans 437 1 1 392 no rank 2619925 0 392 1 species Hyphomicrobium sp. MC1 717785 0 1 0 1082930 8 genus Pelagibacterium 339 2 species Pelagibacterium halotolerans 531813 1 331 0 0 1 2 431 1068 10 genus Rhodomicrobium 0 421 1 1069 species Rhodomicrobium vannielii 0 1 4 1541 70 Devosia genus 46913 1471 3 196773 no rank 0 409 1 Devosia sp. I507 species 2083786 0 1643450 Devosia sp. H5989 species 1 512 0 1 550 Devosia sp. A16 species 1736675 0 1 0 24 Rhodoplanes genus 29407 2 608 2619116 no rank 584 1 0 0 584 1 species Rhodoplanes sp. Z2-YC6860 674703 0 1 7 2016 255475 6 Aurantimonadaceae family 1 0 Martelella 67 genus 293088 1550 4 481 1 2629616 no rank 0 0 481 1 Martelella sp. AD-3 species 686597 1 398 species Martelella endophytica 1486262 0 0 1 604 species Martelella mediterranea 293089 2 460 414371 12 genus Aureimonas 0 1 0 448 1 no rank 2615206 1349819 species Aureimonas sp. AU20 448 1 0 1 0 family 13 Chelatococcaceae 2036754 4 1444 56 genus Chelatococcus 28209 1431 3 1 0 2638111 no rank 1 752 0 1702325 species Chelatococcus sp. CO-6 1 752 0 444444 species Chelatococcus daeguensis 1 623 0 2805 20 118882 9 family Brucellaceae 0 1 14 1165 453 Brucella genus 234 0 1 0 120577 species Brucella ceti 1 42 species Brucella vulpis 981386 1 72 0 Brucella pinnipedialis species 120576 1 53 0 2632610 no rank 4 287 0 0 1844051 species Brucella sp. 09RB8910 108 1 Brucella sp. 141012304 species 1885919 1 82 0 0 species Brucella sp. 09RB8471 1149952 79 1 0 1891098 Brucella sp. 2002734562 species 18 1 Brucella ovis species 236 27 1 0 444163 species Brucella microti 34 1 0 29459 Brucella melitensis species 1 48 0 0 1 63 species Brucella suis 29461 Brucella canis species 36855 1 42 0 0 44 1 species Brucella abortus 235 528 41 genus Ochrobactrum 5 1631 1 0 571256 Ochrobactrum pituitosum species 1 457 0 0 1 384 529 species Ochrobactrum anthropi species Ochrobactrum sp. A44 271865 365 1 0 1 384 Ochrobactrum pseudogrignonense species 419475 0 1203 6 31993 3 Methylocystaceae family 0 1 3 691 133 14 genus Methylocystis 0 1 655015 Methylocystis bryophila species 1 333 0 344 1 2625913 no rank 0 species Methylocystis sp. SC2 187303 344 1 0 13 Methylosinus genus 425 509 2 1 0 1 496 426 species Methylosinus trichosporium 0 0 1 5 821 family 6 Beijerinckiaceae 45404 2 361 Beijerinckia 4 genus 532 0 1 1 357 Beijerinckia indica species 533 0 1 0 13 genus Methylocella 120652 454 2 0 Methylocella silvestris species 199596 441 1 7959 20 69277 64 family Phyllobacteriaceae 0 1 0 1 2 700 31988 24 genus Aminobacter 83263 species Aminobacter aminovorans 676 1 0 2 311 449972 genus 19 Chelativorans 0 1 0 2643807 no rank 292 1 0 species Chelativorans sp. BNC1 266779 1 292 0 1 401 2 28100 Phyllobacterium 11 genus Phyllobacterium zundukense species 1867719 390 1 0 542 2 genus 23 Nitratireductor 245876 0 1 472175 species Nitratireductor basaltis 519 1 0 14 genus Hoeflea 274591 605 2 1 0 0 591 1 2614931 no rank 0 Hoeflea sp. IMCC20628 species 1620421 591 1 1 0 Mesorhizobium 204 genus 68287 9 5336 species Mesorhizobium australicum 536018 1 528 0 species Mesorhizobium loti 381 688 1 0 0 39645 species Mesorhizobium ciceri 775 1 0 species Mesorhizobium sp. B7 1670800 642 1 325217 no rank 619 1 0 0 1 619 278153 Mesorhizobium sp. WSM1497 species species Mesorhizobium amorphae 71433 667 1 0 597 1 2066070 species Mesorhizobium japonicum 0 species Mesorhizobium opportunistum 593909 1 616 0 1585 6 119042 no rank 0 0 1 2 466 16 genus Methyloceanibacter 1484898 1384459 species Methyloceanibacter caenitepidi 1 450 0 1 0 genus 19 Pseudorhodoplanes 1734920 527 2 508 1 1235591 species Pseudorhodoplanes sinuspersici 0 2 592 genus 22 Hartmannibacter 1572860 0 1 0 1 570 Hartmannibacter diazotrophicus species 1482074 1 0 119045 family 29 Methylobacteriaceae 15 7834 2282523 genus 2693 3 0 Methylobacterium extorquens species 408 1 1555 0 0 Methylobacterium zatmanii species 29429 1 380 0 1 758 Methylobacterium populi species 223967 407 229 Methylobacterium genus 9 4589 1 0 3 1530 2615210 no rank 0 Methylobacterium sp. 4-46 species 426117 659 1 0 493 1 1479019 Methylobacterium sp. C1 species 0 0 378 1 925818 Methylobacterium sp. AMS5 species 270351 Methylobacterium aquaticum species 715 1 0 0 114616 species Methylobacterium nodulans 1 645 1 450 334852 species Methylobacterium oryzae 0 0 31998 species Methylobacterium radiotolerans 1 519 0 418223 Methylobacterium phyllosphaerae species 1 501 523 2 18 Microvirga genus 186650 0 1 0 Microvirga ossetica species 1882682 1 505 26 14561 117 family Bradyrhizobiaceae 41294 0 1 0 1 730 3 12 genus Nitrobacter 911 species Nitrobacter hamburgensis 912 386 1 0 1 332 913 Nitrobacter winogradskyi species 0 0 1 5 2492 85413 genus 93 Bosea 0 no rank 2653178 3 1741 0 1 514 species Bosea sp. PAMC 26642 1792307 species Bosea sp. AS-1 2015316 572 1 0 0 Bosea sp. RAC05 species 1842539 655 1 0 1 658 1526658 Bosea vaviloviae species 40136 genus 7 Oligotropha 2 399 1 0 0 1 392 species Oligotropha carboxidovorans 40137 7083 11 374 genus 254 Bradyrhizobium 0 1 0 1 891 375 species Bradyrhizobium japonicum species Bradyrhizobium oligotrophicum 44255 670 1 0 0 2631580 no rank 6 3806 114615 species Bradyrhizobium sp. ORS 278 1 670 0 0 631 1 Bradyrhizobium sp. ORS 285 species 115808 Bradyrhizobium sp. species 376 612 1 0 Bradyrhizobium sp. SK17 species 2057741 676 1 0 species Bradyrhizobium sp. BTAi1 288000 1 675 0 0 1223566 Bradyrhizobium sp. CCGE-LA001 species 1 542 1355477 Bradyrhizobium diazoefficiens species 1 931 0 0 species Bradyrhizobium icense 1274631 1 531 1 0 1649510 Variibacter 8 genus 423 2 1 415 Variibacter gotjawalensis species 1333996 0 36 genus Rhodopseudomonas 1073 3317 2 1 0 1076 species Rhodopseudomonas palustris 3281 1 0 family 27 Xanthobacteraceae 335928 7 1810 1 0 1 0 6 12 Azorhizobium genus 530 2 7 Azorhizobium caulinodans species 1 518 0 0 1 2 637 279 11 Xanthobacter genus 0 626 1 Xanthobacter autotrophicus species 280 616 2 14 genus Starkeya 152053 0 1 0 921 species Starkeya novella 1 602 119043 1 Rhodobiaceae family 737 3 1 0 2 736 18 genus Parvibaculum 256616 0 1 718 1 Parvibaculum lavamentivorans species 256618 0 1 0 1921002 5 Holosporales order 2660 9 926 2 44746 9 family Holosporaceae 0 1 0 1 917 no rank 204454 917 1 species endosymbiont of Acanthamoeba sp. UWC8 86106 0 1777752 family 11 Candidatus Paracaedibacteraceae 710 3 1 0 11 Candidatus Paracaedibacter genus 1521255 2 699 1 0 0 91604 species Candidatus Paracaedibacter acanthamoebae 1 688 1 0 7 family Caedimonadaceae 2100208 1019 3 6 genus Candidatus Nucleicultrix 1509243 1012 2 1 0 0 1006 1 Candidatus Nucleicultrix amoebiphila species 1509244 0 1 345 114873 28216 Betaproteobacteria 127 class 0 1 6870 36 order 58 Neisseriales 206351 0 1 12 2595 36 Chromobacteriaceae family 1499392 187 genus 259 1 0 0 no rank 2620219 259 1 0 species Aquaspirillum sp. LM1 1938604 1 259 no rank 90153 4 1406 0 0 1 1406 4 535 45 Chromobacterium genus 0 species Chromobacterium vaccinii 1108595 580 1 2641838 no rank 369 1 0 1 369 species Chromobacterium sp. ATCC 53434 2059672 0 0 1 412 species Chromobacterium violaceum 536 0 1 2 256 168470 13 genus Laribacter 1 243 168471 Laribacter hongkongensis species 0 313 2 885864 4 Jeongeupia genus 0 1 2619593 no rank 309 1 0 0 309 1 1906741 species Jeongeupia sp. USM3 0 1 325 2 568394 11 genus Pseudogulbenkiania 2642558 no rank 314 1 0 0 314 1 species Pseudogulbenkiania sp. NH8B 748280 19 Neisseriaceae family 481 4217 23 1 0 71 1 genus Simonsiella 279 2 1 0 0 72 Simonsiella muelleri species 278 1 2134 12 482 60 genus Neisseria 0 1 2 275 no rank 2623750 0 0 1 130 Neisseria sp. 10022 species 1853276 0 145 1 species Neisseria sp. KEM232 655307 1 119 490 Neisseria sicca species 0 0 187 1 485 species Neisseria gonorrhoeae Neisseria mucosa species 488 1 108 0 0 species Neisseria meningitidis 487 542 1 0 166 1 28091 species Neisseria weaveri 0 1 147 1853278 species Neisseria sp. 10023 0 1 131 species Neisseria elongata 495 0 187 1 species Neisseria lactamica 486 326523 Neisseria zoodegmatis species 212 1 0 3 539 4 Vitreoscilla genus 59 0 1 0 species Vitreoscilla filiformis 63 214 1 0 no rank 2627922 321 1 0 321 1 Vitreoscilla sp. C1 species 96942 Eikenella 3 genus 538 207 2 1 0 0 Eikenella corrodens species 539 1 204 0 no rank 421605 711 1 0 Neisseriaceae bacterium DSM 100970 species 2052837 711 1 0 1 2 328 1193515 2 Snodgrassella genus 1196083 species Snodgrassella alvi 1 326 0 1 0 59 order Nitrosomonadales 32003 7277 41 2624 13 11 Methylophilaceae family 32011 0 1 0 1 2 156 genus 2 Methylobacillus 404 0 405 Methylobacillus flagellatus species 154 1 0 1 180 16 genus 0 no rank 2630143 1 180 0 1662285 species Methylophilus sp. TWE2 180 1 3 345 81682 19 Methylovorus genus 0 1 0 2634027 no rank 163 1 163 1 887061 Methylovorus sp. MP688 species 0 1 163 266009 Methylovorus glucosotrophus species 0 0 1 3 722 359407 8 Methylotenera genus species Methylotenera versatilis 1055487 1 461 0 0 species Methylotenera mobilis 359408 1 253 0 1 3 1210 1679002 4 Candidatus Methylopumilus genus 0 1581680 Candidatus Methylopumilus turicensis species 298 1 0 908 1 1581557 Candidatus Methylopumilus planktonicus species 436 4 2772226 family 0 1 Sulfuriferula genus 1778653 2 201 1 0 no rank 2637784 200 1 0 0 Sulfuriferula sp. AH1 species 1985873 200 1 235 2 935200 4 genus Sulfuricella 0 1 1 231 Sulfuricella denitrificans species 649841 0 0 1 4 564 10 family Sterolibacteriaceae 2008793 0 1 302 1054211 genus 0 302 1 748811 species Sulfuritalea hydrogenivorans 378210 6 genus Methyloversatilis 252 2 1 0 0 no rank 2639971 246 1 1 246 Methyloversatilis sp. RAC08 species 1842540 0 1 0 Gallionellaceae 9 family 90627 425 4 1 0 Gallionella 3 genus 96 2 218 0 1 215 Gallionella capsiferriformans species 370405 314343 genus 198 1 0 63745 Sideroxydans lithotrophicus species 198 1 0 1 0 family 11 Nitrosomonadaceae 206379 2916 12 1 0 914 genus 27 Nitrosomonas 7 2441 species Nitrosomonas ureae 44577 481 1 0 44574 Nitrosomonas communis species 1 514 0 0 915 species Nitrosomonas europaea 1 213 0 916 species Nitrosomonas eutropha 1 335 0 871 2 no rank 2609265 0 447 1 Nitrosomonas sp. AL212 species 153948 0 Nitrosomonas sp. Is79A3 species 261292 1 424 35798 4 genus Nitrosospira 464 4 1 0 0 184 1 Nitrosospira lacus species 1288494 1231 species Nitrosospira multiformis 1 155 0 0 35799 Nitrosospira briensis species 121 1 1 0 6 Thiobacillaceae family 2008790 3 253 1 0 919 2 genus Thiobacillus 2 247 species Thiobacillus denitrificans 36861 1 245 0 5663 12 no rank 119066 0 1 0 33055 26 genus Kinetoplastibacterium 4302 6 1 702 233181 Kinetoplastibacterium blastocrithidii species 0 0 Candidatus Kinetoplastibacterium crithidii species 33056 1034 1 0 1 1102 994692 Candidatus Kinetoplastibacterium desouzaii species 0 species Candidatus Kinetoplastibacterium galatii 994695 676 1 0 1 762 994696 Candidatus Kinetoplastibacterium oncopeltii species 0 86 1 genus 189384 189385 species Candidatus Tremblaya princeps 86 1 0 2 346 Candidatus Accumulibacter 3 genus 327159 0 1 343 1 327160 Candidatus Accumulibacter phosphatis species 0 1 0 genus 2 Candidatus Profftella 1381133 762 2 species Candidatus Profftella armatura 669502 1 760 0 1301080 genus 167 1 0 0 167 1 1160784 Candidatus Nasuia deltocephalinicola species 0 1 22 4606 Rhodocyclales 66 order 206389 258 3 2008795 family 3 Azonexaceae 0 1 11 genus Dechloromonas 73029 2 255 1 0 0 244 1 species Dechloromonas aromatica 259537 1 0 75787 17 family Rhodocyclaceae 846 6 Azospira 6 genus 146937 2 258 1 0 0 146939 Azospira oryzae species 1 252 0 1 232 75788 no rank 1 232 1898103 species Rhodocyclaceae bacterium 0 339 2 4 genus Aromatoleum 551759 0 1 0 Aromatoleum aromaticum species 551760 1 335 1 0 2008794 71 family Zoogloeaceae 3436 12 1869 6 genus 46 Thauera 33057 0 1 0 310 1 59405 Thauera aromatica species 858 2 2609274 no rank 0 0 species Thauera sp. MZ1T 85643 474 1 384 1 2005884 species Thauera sp. K11 0 1 328 1134435 Thauera humireducens species 0 species Thauera chlorobenzoica 96773 327 1 0 0 1 5 1496 40 genus Azoarcus 12960 species Azoarcus olearius 418699 1 330 0 0 2629479 no rank 2 788 0 Azoarcus sp. KH32C species 748247 396 1 0 198107 Azoarcus sp. CIB species 392 1 0 338 1 2067960 species Azoarcus sp. SY39 231 89520 80840 Burkholderiales 710 order 0 1 4380 17 no rank 224471 0 1 0 88 15 genus Leptothrix 2 449 434 1 Leptothrix cholodnii species 34029 0 1 0 11 genus Mitsuaria 65047 2 490 0 1 479 no rank 2648776 Mitsuaria sp. 7 species 1658665 1 479 0 genus 7 Methylibium 316612 2 436 1 0 0 105560 species Methylibium petroleiphilum 1 429 570 2 28067 14 Rubrivivax genus 0 1 556 1 28068 species Rubrivivax gelatinosus 0 0 [Polyangium] brachysporum species 413882 735 1 0 1 2 457 Roseateles 8 genus 93681 1 449 76731 Roseateles depolymerans species 0 2 333 318147 3 genus Paucibacter 0 1 no rank 2642959 330 1 0 1768242 Paucibacter sp. KCTC 42545 species 1 330 0 1 0 32012 Thiomonas 12 genus 447 2 Thiomonas intermedia species 926 1 435 0 0 1 2 463 2 Rhizobacter genus 212743 946333 species Rhizobacter gummiphilus 461 1 0 0 2 537 80841 no rank 0 248 1 1469502 Burkholderiales bacterium GJ-E10 species 1834205 Burkholderiales bacterium YL45 species 1 289 0 1 0 Oxalobacteraceae 58 family 75682 8062 27 genus 846 1 150 0 0 150 1 847 Oxalobacter formigenes species 0 genus 303379 396 2 1 229 204773 Herminiimonas arsenicoxydans species 0 Herminiimonas arsenitoxidans species 1809410 1 167 0 0 1 6 2214 149698 genus 48 Massilia 1 440 Massilia sp. ZMN-3 species 2072590 0 0 no rank 2609279 2 801 Massilia sp. WG5 species 1707785 1 453 0 1678028 Massilia sp. NR 4-1 species 1 348 0 0 482 1 Massilia putida species 1141883 0 2045208 species Massilia sp. B2 443 1 1 0 29580 26 genus Janthinobacterium 2011 7 0 species Janthinobacterium agaricidamnosum 55508 308 1 species Janthinobacterium svalbardensis 368607 385 1 0 0 1292 4 2610881 no rank 0 1 386 species Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 species Janthinobacterium sp. Marseille 375286 1 244 0 333 1 species Janthinobacterium sp. LM6 1938606 0 1 329 Janthinobacterium sp. B9-8 species 1236179 0 963 39 Herbaspirillum genus 6 1897 1 0 423 1 species Herbaspirillum seropedicae 964 0 286 1 no rank 2624150 0 0 1 286 2025949 Herbaspirillum sp. meg3 species 0 92645 species Herbaspirillum frisingense 340 1 species Herbaspirillum hiltneri 341045 515 1 0 0 80842 species Herbaspirillum rubrisubalbicans 1 294 202907 24 Collimonas genus 4 1336 1 0 Collimonas arenae species 279058 1 504 0 354 1 species Collimonas pratensis 279113 0 0 Collimonas fungivorans species 158899 454 1 1 0 Burkholderiaceae 210 family 119060 46074 84 1291 4 16 Polynucleobacter genus 44013 0 1 1 309 576610 Polynucleobacter necessarius species 0 0 338 1 species Polynucleobacter duraquae 1835254 species Polynucleobacter asymbioticus 576611 628 1 0 genus 2571159 221 1 0 1 221 412963 species Paraburkholderia rhizoxinica 0 10 3673 65 genus Pandoraea 93217 0 1 0 93221 species Pandoraea pulmonicola 933 1 0 656179 species Pandoraea faecigallinarum 1 318 0 299 1 species Pandoraea apista 93218 0 species Pandoraea pnomenusa 93220 1 506 93222 species Pandoraea sputorum 260 1 0 1 274 species Pandoraea vervacti 656178 0 0 species Pandoraea thiooxydans 445709 289 1 0 573737 Pandoraea oxalativorans species 321 1 0 1 408 species Pandoraea norimbergensis 93219 106589 117 Cupriavidus genus 5407 9 1 0 0 367825 Cupriavidus sp. USMAA1020 species 1 729 68895 species Cupriavidus basilensis 786 1 0 2640874 no rank 1512 2 0 species Cupriavidus sp. USMAA2-4 876364 784 1 0 0 1 728 Cupriavidus sp. USMAHM13 species 1389192 0 857 1 119219 Cupriavidus metallidurans species species Cupriavidus pinatubonensis 248026 392 1 0 391 1 82541 species Cupriavidus gilardii 0 623 1 106590 Cupriavidus necator species 0 3244 5 48 genus Ralstonia 48736 0 1 305 Ralstonia solanacearum species 1 1731 0 0 363 1 Ralstonia insidiosa species 190721 0 639 1 Ralstonia pickettii species 329 0 463 1 105219 Ralstonia mannitolilytica species 0 1 12 5341 1822464 79 genus Paraburkholderia 442 1 species Paraburkholderia aromaticivorans 2026199 0 148447 Paraburkholderia phymatum species 453 1 0 311230 species Paraburkholderia terrae 1 393 0 species Paraburkholderia phytofirmans 261302 587 1 0 0 169430 Paraburkholderia hospita species 1 468 1 414 2615204 no rank 0 1926494 species Paraburkholderia sp. SOS3 1 414 0 0 species Paraburkholderia caribensis 75105 852 1 1 502 36873 Paraburkholderia xenovorans species 0 Paraburkholderia sprentiae species 948107 370 1 0 0 389 1 134537 Paraburkholderia fungorum species 392 1 252970 species Paraburkholderia phenoliruptrix 0 genus 1827195 411 1 0 1 411 Burkholderia sp. RPE64 species 758793 0 1 0 Burkholderia 936 genus 32008 26276 41 0 28095 Burkholderia gladioli species 942 1 0 482 1 41899 Burkholderia plantarii species 0 2613784 no rank 11 3657 1097668 species Burkholderia sp. YI23 427 1 0 640512 Burkholderia sp. CCGE1003 species 1 408 0 259 1 Burkholderia sp. Bp7605 species 1740163 0 758796 species Burkholderia sp. RPE67 436 1 0 0 342 1 species Burkholderia sp. HB1 1678678 0 species Burkholderia sp. KJ006 416344 323 1 0 1 234 Burkholderia sp. PAMC 26561 species 1795043 313 1 Burkholderia sp. Bp5365 species 1740162 0 1468409 species Burkholderia sp. 2002721687 303 1 0 0 1 202 1795874 species Burkholderia sp. PAMC 28687 1 410 640510 species Burkholderia sp. CCGE1001 0 7 6737 species group 111527 0 57975 Burkholderia thailandensis species 938 1 0 3258 1 Burkholderia pseudomallei species 28450 0 1637841 species Burkholderia sp. MSMB0852 1 504 0 0 species Burkholderia mallei 13373 1 621 549 1 Burkholderia oklahomensis species 342113 0 0 1637837 Burkholderia sp. MSMB0266 species 1 417 1 450 species Burkholderia sp. MSMB617WGS 1637831 0 species group 87882 12623 19 0 0 1 706 Burkholderia vietnamiensis species 60552 349 1 species [Pseudomonas] mesoacidophila 265293 0 0 488446 Burkholderia latens species 365 1 1503054 Burkholderia stagnalis species 495 1 0 0 319 1 Burkholderia seminalis species 488731 0 Burkholderia metallica species 488729 1 292 0 1 274 1503055 Burkholderia territorii species 2063 1 Burkholderia cepacia species 292 0 0 935 1 species Burkholderia lata 482957 0 901 1 87883 species Burkholderia multivorans 0 680 1 species Burkholderia stabilis 95485 0 1697 1 95486 species Burkholderia cenocepacia species Burkholderia ubonensis 101571 1 1218 0 0 1 349 152500 Burkholderia dolosa species 488732 species Burkholderia diffusa 316 1 0 1 300 species Burkholderia pyrrocinia 60550 0 0 604 1 species Burkholderia ambifaria 152480 1 423 488447 Burkholderia contaminans species 0 0 1 337 1207504 Burkholderia pseudomultivorans species 1 899 337 Burkholderia glumae species 0 95 family Alcaligenaceae 506 13814 43 1 0 1 0 359336 genus 8 Castellaniella 2 288 0 1 280 species Castellaniella defragrans 75697 0 299 1 90243 genus 0 90245 species Oligella urethralis 299 1 1 0 290425 3 genus Advenella 512 3 310575 species Advenella kashmirensis 229 1 0 Advenella mimigardefordensis species 302406 280 1 0 1 0 4 genus Alcaligenes 507 2 804 0 1 800 Alcaligenes faecalis species 511 1 0 1472344 3 Basilea genus 2 372 0 369 1 species Basilea psittacipulmonis 1472345 0 1 3 1423 1 genus Taylorella 29574 0 1 621 84590 Taylorella asinigenitalis species 0 species Taylorella equigenitalis 29575 801 1 221 2 3 genus Pusillimonas 305976 0 1 218 1 no rank 2640016 0 1 218 1007105 species Pusillimonas sp. T7-7 0 1921582 3 genus Orrella 2 273 1 0 1851544 species Orrella dioscoreae 1 270 0 1 0 517 153 genus Bordetella 5568 17 0 1 267 species Bordetella genomosp. 9 1416803 1 326 1331258 Bordetella pseudohinzii species 0 0 species Bordetella pertussis 520 1 389 269 1 no rank 2630031 0 0 species Bordetella sp. H567 1697043 269 1 0 1416806 Bordetella genomosp. 8 species 364 1 123899 species Bordetella trematum 1 243 0 463040 Bordetella genomosp. 13 species 1 342 0 0 728 1 species Bordetella bronchiseptica 518 Bordetella avium species 521 174 1 0 0 519 Bordetella parapertussis species 1 396 0 351 1 species Bordetella bronchialis 463025 463014 Bordetella flabilis species 1 280 0 358 1 103855 species Bordetella hinzii 0 0 211 1 Bordetella holmesii species 35814 0 Bordetella genomosp. 6 species 463024 394 1 0 323 1 94624 species Bordetella petrii 1 0 222 83 genus Achromobacter 3662 6 779 1 32002 Achromobacter denitrificans species 0 1 403 no rank 2626865 0 0 403 1 species Achromobacter sp. AONIH1 1758194 0 547 1 Achromobacter spanius species 217203 315 1 species Achromobacter insolitus 217204 0 85698 species Achromobacter xylosoxidans 1 1535 0 Paenalcaligenes 4 genus 1100891 297 2 1 0 1 293 species Paenalcaligenes hominis 643674 0 1 0 80864 family 191 Comamonadaceae 15943 57 1 0 28065 12 genus Rhodoferax 5 1105 1 215 81479 species Rhodoferax antarcticus 0 0 species Rhodoferax ferrireducens 192843 247 1 1484693 species Rhodoferax saidenbachensis 1 203 0 428 1 Rhodoferax koreense species 1842727 0 1436289 genus 184 1 0 0 1436290 Candidatus Symbiobacter mobilis species 1 184 1649468 7 genus Melaminivora 2 307 1 0 0 300 1 no rank 2641902 0 1 300 2109913 species Melaminivora sp. SC2-9 0 1 884 3 2 genus Polaromonas 52972 0 species Polaromonas naphthalenivorans 216465 308 1 0 no rank 2638319 1 574 1 574 Polaromonas sp. JS666 species 296591 0 1 0 174951 3 Ramlibacter genus 717 2 714 1 94132 species Ramlibacter tataouinensis 0 0 1 993 4 9 Hydrogenophaga genus 47420 species Hydrogenophaga crassostreae 1763535 250 1 0 2610897 no rank 2 734 0 0 795665 species Hydrogenophaga sp. PBC 412 1 0 1842537 species Hydrogenophaga sp. RAC07 322 1 0 238749 genus 1 250 1546149 species Diaphorobacter polyhydroxybutyrativorans 1 250 0 0 1 361 2 201096 5 Alicycliphilus genus 0 356 1 179636 Alicycliphilus denitrificans species 0 2 451 2490452 genus 0 213 1 species Comamonadaceae bacterium B1 1458426 238 1 species Comamonadaceae bacterium A1 1458425 0 283 8 Comamonas genus 4 1346 1 0 0 541 1 285 species Comamonas testosteroni 0 225992 species Comamonas kerstersii 1 333 464 1 species Comamonas serinivorans 1082851 0 0 1 384 3 665874 1 genus Limnohabitans 0 383 2 2626134 no rank 1678128 Limnohabitans sp. 63ED37-2 species 215 1 0 168 1 1678129 Limnohabitans sp. 103DPR2 species 0 0 212 1 2678886 genus 2116657 species Melaminivora sp. SC2-7 1 212 0 0 1 2 464 364316 2 Verminephrobacter genus 462 1 Verminephrobacter eiseniae species 364317 0 5 1781 80865 Delftia 49 genus 0 1 0 1 407 species Delftia tsuruhatensis 180282 Delftia acidovorans species 80866 387 1 0 2613839 no rank 2 938 0 species Delftia sp. HK171 1920191 1 426 0 512 1 742013 species Delftia sp. Cs1-4 0 0 1 3363 5 34072 genus 48 Variovorax 0 1 525 436515 species Variovorax boronicumulans 0 34073 Variovorax paradoxus species 1750 1 0 663243 no rank 2 1040 1 547 species Variovorax sp. PMC12 2126319 0 0 Variovorax sp. PAMC 28711 species 1795631 493 1 0 1 9 2240 12916 101 Acidovorax genus no rank 2684926 993 4 0 0 1 233 1842533 species Acidovorax sp. RAC01 species Acidovorax sp. JS42 232721 1 223 0 0 233 1 358220 Acidovorax sp. KKS102 species 0 1 304 species Acidovorax sp. T1 1858609 0 1 163 species Acidovorax sp. NA3 553814 0 Acidovorax citrulli species 80869 1 374 721785 species Acidovorax ebreus 1 198 0 0 1 411 80867 Acidovorax avenae species 246 2 4 genus Simplicispira 352450 0 1 0 242 1 2109915 Simplicispira sp. SC1-8 species 0 1 464 3 219181 6 Ottowia genus 0 1 181 2645081 no rank 0 1658672 species Ottowia sp. oral taxon 894 181 1 Ottowia sp. KADR8-3 species 2109914 277 1 0 0 no rank 33809 810 2 0 405 1 species beta proteobacterium CB 543913 1904640 Betaproteobacteria bacterium GR16-43 species 405 1 0 580370 2 class Zetaproteobacteria 462 6 1 0 0 1 460 5 580371 17 order Mariprofundales 0 1 4 443 580372 Mariprofundaceae 2 family 377315 4 genus Mariprofundus 441 3 1 0 1921086 Mariprofundus aestuarium species 221 1 0 0 1 216 Mariprofundus ferrinatatus species 1921087 phylum 200930 2942 9 0 1 0 4 Deferribacteres class 68337 2942 9 order 14 Deferribacterales 191393 8 2938 1 0 191394 11 family Deferribacteraceae 7 2924 1 0 0 genus 2351 526 1 0 526 1 species Flexistipes sinusarabici 2352 1 0 117999 7 genus Denitrovibrio 2 367 Denitrovibrio acetiphilus species 118000 1 360 0 genus 545865 1 537 0 0 537 1 477976 species Calditerrivibrio nitroreducens 53572 1 genus Deferribacter 1483 2 1 0 0 Deferribacter desulfuricans species 197162 1 1482 1 0 8 Elusimicrobia phylum 74152 9 1252 3 Elusimicrobia class 641853 3 256 1 0 1 0 641854 order 1 Elusimicrobiales 2 253 1 252 641876 family 0 0 1 252 423604 genus species Elusimicrobium minutum 423605 252 1 0 1 class Endomicrobia 447830 4 663 1 0 0 3 662 1783344 order 0 1 3 662 2 Endomicrobiaceae family 1783343 1408194 genus 2 660 0 333 1 1408281 species Endomicrobium proavitum 0 1408204 species Candidatus Endomicrobium trichonymphae 327 1 0 1 325 99260 no rank 0 0 167965 species uncultured Termite group 1 bacterium 1 325 0 2323 no rank 686 3 3 686 clade 1783234 0 0 95901 clade 619 2 0 2497643 class 619 2 0 order 2497644 619 2 2 619 family 2497645 0 2 619 genus 5 Candidatus Babela 1551504 0 1 0 1 614 species Candidatus Babela massiliensis 673862 95818 phylum 1 67 0 0 1895827 no rank 1 67 0 67 1 2056494 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 0 0 1 name