members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4753 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 31 33705395 80080 1 4436 2 superkingdom 33376075 0 Bacteria 192 2 1364 phylum 68297 0 0 2 class 1364 203486 0 2 1364 order 203487 0 2 1364 family 203488 0 2 13 1364 genus 1 513050 680 species 0 Dictyoglomus turgidum Dictyoglomus thermophilum 0 684 species 14 1 25 phylum 5717 200783 0 25 1 class 5717 187857 Aquificae 0 10 0 Desulfurobacteriales 4 1 5 1485951 1136 order 5 0 Desulfurobacteriaceae 558314 family 1132 1 4 genus 612 64159 1 0 Desulfurobacterium thermolithotrophum 0 612 species 64160 1 1 Thermovibrio 0 515 genus 171868 2 1 Thermovibrio ammonificans 0 1 514 species 228745 3 Aquificales 0 order 4571 32069 19 1 3 Aquificaceae 0 family 2547 64898 11 1 0 939 175 genus 1 0 Hydrogenobacter thermophilus 1 940 175 species 32 0 Hydrogenobaculum 168657 1961 genus 1 6 0 2622382 1929 no rank 5 1 305 species 380749 Hydrogenobaculum sp. Y04AAS1 0 1 species 406 547145 Hydrogenobaculum sp. SHO 0 Hydrogenobaculum sp. SN 0 1 406 species 547146 547144 406 species 1 0 Hydrogenobaculum sp. HO 0 Hydrogenobaculum sp. 3684 547143 406 species 1 108 genus 2713 1 0 63363 species 108 1 0 Aquifex aeolicus 0 75905 300 genus 2 Thermocrinis albus 0 166 species 136094 1 Thermocrinis ruber 0 species 134 75906 1 7 0 Hydrogenothermaceae 224027 1573 family 1 6 1 Persephonella 0 417 genus 182899 2 1 1 416 species 309805 Persephonella marina 0 15 Sulfurihydrogenibium 0 1149 genus 212790 3 1 0 1 735 no rank 2619248 1 436114 735 species 0 Sulfurihydrogenibium sp. YO3AOP1 Sulfurihydrogenibium azorense 0 1 species 399 309806 0 90150 448 no rank 1 1 448 genus 412592 0 Thermosulfidibacter takaii 0 species 448 412593 1 64269 phylum 203691 58 0 0 Spirochaetia 257 1 58 203692 class 64269 8 0 Brachyspirales 1643686 order 10473 1 7 0 Brachyspiraceae 150 1 6 143786 10465 family 29521 10315 genus 1 5 101 0 Brachyspira species 4616 52584 1 Brachyspira pilosicoli 0 0 Brachyspira murdochii 1 84378 species 1445 1 species 2016 84377 Brachyspira intermedia 0 159 2137 species 1 0 Brachyspira hyodysenteriae 0 1643688 4265 order 8 10 Leptospiraceae 0 family 4265 170 8 1 6 1 3291 genus 171 Leptospira 0 12 Leptospira borgpetersenii 0 549 species 174 1 1 species 1205 173 Leptospira interrogans 0 0 Leptospira alstonii 1 28452 species 611 28183 603 species 1 0 Leptospira santarosai 1 172 311 species 0 Leptospira biflexa 1 338321 genus 964 0 0 Turneriella parva 1 29510 species 964 42 1 order 49274 136 Spirochaetales 0 1934 family 7736 1643685 17 1 15 Borreliaceae 0 63 0 Borreliella 64895 genus 3522 1 8 0 Borreliella bavariensis 1 664662 355 species Borreliella burgdorferi 0 536 species 139 1 0 Borreliella garinii 1 29519 species 760 Borreliella afzelii 0 1 species 548 29518 1 488 species 1674146 Borrelia mayonii 0 Borreliella valaisiana 0 1 424 species 62088 0 Borreliella bissettii 64897 348 species 1 68 Borrelia 0 genus 4199 138 8 1 Borrelia miyamotoi 0 1 species 1090 47466 40834 533 species 1 0 Borrelia duttonii 1 44449 species 383 0 Borrelia recurrentis Borrelia anserina 0 1 593 species 143 Borrelia parkeri 0 1 389 species 141 0 Borrelia turicatae 142 518 species 1 Borrelia hermsii 0 1 625 species 140 24 1 39604 family 137 Spirochaetaceae 0 771 146 4177 genus 1 3 12 0 Spirochaeta 46355 1939 species 1 0 Spirochaeta africana species 2226 154 1 Spirochaeta thermophila 0 genus 1451 1616789 2 1 1 Salinispira 0 1450 species 1307761 1 Salinispira pacifica 0 Sphaerochaeta 0 21 4 1 genus 4445 399320 Sphaerochaeta coccoides 0 1 1342 species 273376 1 1131703 species 2157 0 Sphaerochaeta globosa Sphaerochaeta pleomorpha 0 species 925 1131707 1 2 0 Sediminispirochaeta 1911556 1304 genus 1 2 Sediminispirochaeta smaragdinae 0 1302 species 55206 1 461 Treponema 0 genus 27456 157 12 1 Treponema primitia 0 1 species 1680 88058 0 Treponema succinifaciens 167 species 6826 1 1 158 2738 species 0 Treponema denticola species 97 160 1 Treponema pallidum 0 Treponema brennaborense 0 1 2415 species 81028 0 Treponema paraluiscuniculi 53435 95 species 1 409322 610 species 1 0 Treponema pedis 0 2638727 4252 no rank 1 0 Treponema sp. OMZ 838 1539298 4252 species 1 Treponema putidum 0 1 4885 species 221027 1 215591 species 1292 0 Treponema caldarium 1 species 2105 150829 Treponema azotonutricium 0 0 20 13872 phylum 57723 0 Blastocatellia 3 1 3 1562566 1286 class Chloracidobacterium 0 4 2 1 genus 1283 458032 0 Chloracidobacterium thermophilum 1 458033 1279 species 87 0 Acidobacteriia 204432 class 12586 1 17 27 0 Solibacterales 332160 2340 order 1 4 42 0 Solibacteraceae 332161 family 2313 1 3 1 2 332162 2271 genus 0 Candidatus Solibacter 10 1 332163 species 2261 0 Candidatus Solibacter usitatus 1 12 204433 order 10159 0 Acidobacteriales 99 10060 family 204434 11 1 132 Acidobacteriaceae 0 59 0 Granulicella 940557 2875 genus 1 3 0 Granulicella mallensis 940614 1469 species 1 1 940615 1347 species 0 Granulicella tundricola 2 1 1825 genus 33973 Acidobacterium 0 5 Acidobacterium capsulatum 0 1820 species 33075 1 658061 2157 genus 1 2 17 0 Candidatus Koribacter 1 2140 species 658062 Candidatus Koribacter versatilis 0 1 3 392733 genus 3071 0 Terriglobus 39 1 species 1681 392734 Terriglobus roseus 0 1 870903 1351 species 0 Terriglobus saanensis 0 13 6220 phylum 40117 1 13 203693 class 6220 0 Nitrospira 6 106 0 Nitrospirales 189778 6214 order 1 12 189779 family 6108 1 11 32 0 Nitrospiraceae 5 1 genus 4128 1234 Nitrospira 0 41 855 species 1715989 1 Candidatus Nitrospira inopinata 0 0 Nitrospira japonica 1325564 794 species 1 species 879 330214 1 Nitrospira defluvii 0 42253 1559 species 1 0 Nitrospira moscoviensis 0 28261 806 genus 1 1 28262 species 806 0 Thermodesulfovibrio yellowstonii Leptospirillum 0 2 4 1 1142 genus 179 species group 504 261386 1 0 1 178606 species 504 0 Leptospirillum ferriphilum 1 655606 species group 261 0 1 261 species 180 Leptospirillum ferrooxidans 0 0 species group 375 261385 1 375 species 1660083 1 Leptospirillum sp. Group II 'CF-1' 0 0 370 2333297 clade 1783270 0 355 68336 2323632 clade 0 phylum 15436 1090 22 15436 class 191410 22 1 56 Chlorobia 0 0 Chlorobiales 158 1 21 191411 15380 order 83 Chlorobiaceae 0 15222 family 191412 20 1 1 2 100715 genus 838 0 Chloroherpeton 4 0 Chloroherpeton thalassium 1 100716 834 species genus 2948 1101 5 1 5 Prosthecochloris 0 0 2409 no rank 2632826 3 1 1974213 species 791 0 Prosthecochloris sp. HL-130-GSB Prosthecochloris sp. GSB1 0 1 1160 species 281093 1 1868325 458 species 0 Prosthecochloris sp. CIB 2401 1 species 534 1102 Prosthecochloris aestuarii 0 274493 5219 no rank 8 0 5 0 Chlorobium 1091 3124 genus 1 5 1 species 328 337090 Chlorobium chlorochromatii 0 864 species 1092 1 Chlorobium limicola 0 1094 732 species 1 0 Chlorobium phaeovibrioides species 1195 1096 1 Chlorobium phaeobacteroides 0 3 1 2095 genus 1099 Pelodictyon 0 18 0 Pelodictyon phaeoclathratiforme 1 34090 species 763 1100 1314 species 1 0 Pelodictyon luteolum 46 Chlorobaculum 0 6134 genus 256319 4 1 1 274539 species 2156 0 Chlorobaculum parvum species 2380 274537 1 Chlorobaculum limnaeum 0 species 1552 1097 1 Chlorobaculum tepidum 0 0 7 1134404 phylum 2390 Ignavibacteria 0 3 7 1 2390 class 795747 1 Ignavibacteriales 0 2387 order 795748 6 1 3 1 family 900 1334117 Melioribacteraceae 0 3 0 Melioribacter 1 1 2 1134403 genus 897 0 Melioribacter roseus 1134405 species 896 1 1486 family 795749 2 0 3 0 Ignavibacterium 795750 1486 genus 1 2 1 591197 1483 species 0 Ignavibacterium album 326 1 2305806 phylum 976 Bacteroidetes 0 43 117743 108721 class 1 145 58 0 Flavobacteriia Flavobacteriales 0 166 144 1 order 108663 200644 21 family 33183 2762318 0 6 1 genus 6947 308865 Elizabethkingia 0 29 1756150 776 species 1 0 Elizabethkingia genomosp. 4 1 238 1449 species 0 Elizabethkingia meningoseptica 0 Elizabethkingia genomosp. 3 1756149 900 species 1 1 species 1378 172045 Elizabethkingia miricola 0 0 Elizabethkingia anophelis 1117645 species 2415 1 2782232 11774 no rank 10 0 24 Chryseobacterium 0 genus 10366 59732 9 1 2593645 3732 no rank 3 0 species 1170 878220 1 Chryseobacterium sp. StRB126 0 Chryseobacterium sp. T16E-39 0 1 species 1476 2015076 1 1086 species 1721091 Chryseobacterium sp. IHB B 17019 0 558152 934 species 1 0 Chryseobacterium piperi 1 species 2179 253 Chryseobacterium indologenes 0 1 831 species 1265445 Chryseobacterium camelliae 0 1324352 1197 species 1 0 Chryseobacterium gallinarum 1685010 species 1469 1 0 Chryseobacterium glaciei 0 genus 1408 2782228 1 1 1408 species 536441 Chryseobacterium taklimakanense 0 0 1 1013 676 genus 1014 676 species 1 0 Weeksella virosa genus 1731 34084 2 1 2 Riemerella 0 34085 1729 species 1 0 Riemerella anatipestifer Ornithobacterium 0 83 2 1 genus 12055 28250 Ornithobacterium rhinotracheale 0 1 species 11972 28251 0 Ichthyobacteriaceae 1 1 2 1755828 379 family 1 1755829 genus 378 0 Ichthyobacterium seriolicida 0 1 378 species 242600 0 family 915 1333713 2 267986 915 genus 1 2 2 0 Owenweeksia 253245 species 913 1 0 Owenweeksia hongkongensis 2919 family 39782 9 0 Blattabacterium 0 117 9 1 genus 2919 34098 Blattabacterium punctulatus 0 1 516 species 164514 0 2647581 1830 no rank 6 1 1316444 231 species 0 Blattabacterium sp. (Nauphoeta cinerea) 0 Blattabacterium sp. (Mastotermes darwiniensis) 39768 species 363 1 1 species 241 367806 Blattabacterium sp. (Blatta orientalis) 0 Blattabacterium sp. (Blattella germanica) 0 1 425 species 624186 1 species 269 1186051 Blattabacterium sp. (Blaberus giganteus) 0 Blattabacterium sp. (Periplaneta americana) 0 species 301 367488 1 1653831 456 species 1 0 Blattabacterium cuenoti family 2 246874 1 Cryomorphaceae 0 3 601 no rank 313602 0 genus 504 336809 2 1 10 Candidatus Sulcia 0 Candidatus Sulcia muelleri 0 1 494 species 336810 97 genus 1940138 1 0 0 Candidatus Walczuchella monophlebidarum 1415657 97 species 1 817 family 1853230 2 0 2 1 genus 817 332102 Fluviicola 0 6 0 Fluviicola taffensis 1 191579 811 species 49546 family 69681 1 103 1102 0 Flavobacteriaceae 1 2 1209327 1046 genus 0 Flavivirga 1 1803846 species 1045 1 0 Flavivirga eckloniae 0 genus 850 336276 1 850 no rank 2615019 1 0 850 species 2058135 1 Olleya sp. Bg11-27 0 111500 1010 genus 2 0 0 Muricauda ruestringensis 111501 species 565 1 1 445 species 516051 Muricauda lutaonensis 0 0 Robiginitalea 4 1 2 252306 genus 1146 0 Robiginitalea biformata 1 252307 1142 species 2 554 genus 225842 0 2 no rank 554 2644710 0 0 Formosa sp. Hel1_33_131 1336794 species 336 1 1 1336795 species 218 0 Formosa sp. Hel3_A1_48 0 435 genus 83612 1 57029 species 435 1 0 Psychroflexus torquis 5 1 3665 genus 104267 Tenacibaculum 0 3 1850252 749 species 1 0 Tenacibaculum todarodis 1 584609 species 1341 0 Tenacibaculum jejuense 107401 species 590 1 0 Tenacibaculum maritimum 0 Tenacibaculum dicentrarchi 1 669041 982 species 5 1 2231 genus 363408 Nonlabens 0 1 2615035 978 no rank 2 0 0 Nonlabens sp. MB-3u-79 2058134 species 452 1 Nonlabens sp. MIC269 0 1 526 species 1476901 319236 species 712 1 0 Nonlabens sediminis 1 species 540 328515 Nonlabens dokdonensis 0 0 2 1782 no rank 61432 species 897 531844 1 Flavobacteriaceae bacterium 3519-10 0 0 Flavobacteriaceae bacterium UJ101 1 1150389 species 885 1 2 1649495 genus 1290 0 Seonamhaeicola 1 no rank 1289 2622645 1 0 0 Seonamhaeicola sp. S2-3 1 1936081 species 1289 326319 genus 1913 1 4 15 0 Dokdonia 0 Dokdonia donghaensis 326320 species 575 1 2 2615033 no rank 1323 0 1 535 species 313590 Dokdonia sp. MED134 0 0 Dokdonia sp. 4H-3-7-5 1 983548 788 species 6 1 5547 genus 52959 Polaribacter 0 9 1 1431 species 1774273 Polaribacter vadi 0 2898 no rank 196858 3 0 0 Polaribacter sp. BM10 1529069 species 888 1 1245 species 2058137 1 Polaribacter sp. ALD11 0 1 313598 species 765 0 Polaribacter sp. MED152 1 species 1209 996801 Polaribacter reichenbachii 0 0 1 562 genus 1204360 0 Siansivirga zeaxanthinifaciens 1 762954 species 562 4 0 Salegentibacter 143222 827 genus 1 2 2633436 823 no rank 1 0 Salegentibacter sp. T436 0 1 823 species 1729720 0 Cellulophaga 19 1 4 104264 2900 genus 716 species 59600 1 Cellulophaga algicola 0 1 979 species 1095 0 Cellulophaga lytica species 1070 76594 1 Cellulophaga baltica 0 0 1 864 genus 1176327 2636237 no rank 864 1 0 864 species 2094025 1 Aureitalea sp. RR4-38 0 genus 728 216431 1 0 1 313588 728 species 0 Croceibacter atlanticus 0 Capnocytophaga 53 1 15 1016 genus 9491 species 537 327575 1 Capnocytophaga leadbetteri 0 737 species 1017 1 Capnocytophaga gingivalis 0 0 Capnocytophaga canimorsus 1 28188 species 887 0 Capnocytophaga ochracea 1 1018 species 538 1 1848904 species 652 0 Capnocytophaga stomatis 632 species 45243 1 Capnocytophaga haemolytica 0 Capnocytophaga sputigena 0 1 species 984 1019 0 6 3665 no rank 2640652 Capnocytophaga sp. ChDC OS43 0 1 1091 species 209053 Capnocytophaga sp. oral taxon 878 0 1 656 species 1316596 0 Capnocytophaga sp. H4358 1 1945658 species 464 1 425 species 1705617 Capnocytophaga sp. oral taxon 323 0 1 1316593 475 species 0 Capnocytophaga sp. oral taxon 864 0 Capnocytophaga sp. H2931 1 1945657 554 species Capnocytophaga cynodegmi 0 806 species 28189 1 6 0 Lacinutrix 291183 genus 2497 1 4 0 2 2647285 no rank 1689 1 750 species 2057808 Lacinutrix sp. Bg11-31 0 species 939 983544 1 Lacinutrix sp. 5H-3-7-4 0 802 species 1486034 1 Lacinutrix venerupis 0 0 1518147 1038 genus 1 1 species 1038 1790137 Wenyingzhuangia fucanilytica 0 0 Maribacter 1 1 5 252356 genus 3436 no rank 2830 2615042 3 0 1 species 970 313603 Maribacter sp. HTCC2170 0 Maribacter sp. T28 0 1138 species 1836467 1 Maribacter sp. 1_2014MBL_MicDiv 0 1 species 722 1644130 0 Maribacter cobaltidurans 1 1178778 species 605 1 261827 981 genus 0 981 species 1736674 1 Algibacter alginicilyticus 0 286104 genus 1666 1 3 2 0 Winogradskyella 0 2 1664 no rank 2615021 1936080 species 630 1 0 Winogradskyella sp. J14-2 1 754409 1034 species 0 Winogradskyella sp. PG-2 Gramella 0 14 5 1 genus 2383 292691 Gramella sp. SH35 0 1 species 544 2126553 Gramella sp. LPB0144 0 species 484 1913577 1 0 Gramella forsetii 411153 694 species 1 1486245 647 species 1 0 Gramella flava 0 1 genus 1175 2700084 1 1850246 species 1175 0 Lutibacter sp. LPB0138 genus 816 417127 2 1 6 Zunongwangia 0 Zunongwangia profunda 0 species 810 398743 1 1 389486 genus 518 0 0 1 no rank 518 2648869 1 1453352 518 species 0 Sediminicola sp. YIK13 1 2 112040 1014 genus 0 Zobellia 2 63186 1012 species 1 0 Zobellia galactanivorans 694 genus 178469 1 0 Arenibacter algicola 0 694 species 616991 1 0 1 636 genus 393005 2069432 636 species 1 0 Tamlana sp. UJ94 9 1 8959 genus 237 Flavobacterium 0 14 Flavobacterium branchiophilum 0 1 583 species 55197 1 1492737 750 species 0 Flavobacterium gilvum 986 2778 species 1 0 Flavobacterium johnsoniae 1 996 1553 species 0 Flavobacterium columnare 1306519 species 1000 1 0 Flavobacterium commune Flavobacterium crassostreae 0 1 species 517 1763534 Flavobacterium indicum 0 1 1016 species 312277 Flavobacterium psychrophilum 0 1 748 species 96345 5 0 Lutibacter 358023 genus 1138 1 2 1622118 species 1133 1 0 Lutibacter profundi 0 Myroides 34 1 5 76831 genus 4057 1 480520 species 689 0 Myroides profundi 0 Myroides odoratimimus 76832 species 1820 1 0 2642485 1514 no rank 2 0 Myroides sp. ZB35 1458492 863 species 1 0 Myroides sp. A21 1 1583100 species 651 0 1 genus 730 153265 Aequorivita sublithincola 0 1 species 730 101385 2 Saprospiria 0 2141 class 1937959 8 1 2139 order 1936988 7 1 3 Saprospirales 0 1937961 family 1443 1 3 5 0 Haliscomenobacteraceae 4 0 Haliscomenobacter 2349 1438 genus 1 2 0 Haliscomenobacter hydrossis 1 2350 species 1434 2 0 Saprospiraceae 89374 family 693 1 3 1007 genus 691 1 2 1 0 Saprospira Saprospira grandis 0 1 species 690 1008 Chitinophagia 0 5 13 1 class 9261 1853228 1853229 order 9256 1 12 28 0 Chitinophagales 11 1 family 9228 563835 Chitinophagaceae 0 165 0 1 354354 genus 1866 1866 species 354356 1 Niastella koreensis 0 0 1 649460 genus 1267 477680 1267 species 1 0 Filimonas lacunae 398041 genus 776 1 0 Flavisolibacter tropicus 0 776 species 1492898 1 0 1769012 884 genus 1 1 no rank 884 2636138 0 0 Arachidicoccus sp. BS20 1850526 species 884 1 0 Niabella 5 1 3 379899 2197 genus 1 1100 species 446683 Niabella soli 0 0 Niabella ginsenosidivorans 1176587 species 1092 1 Chitinophaga 0 2 3 1 2073 genus 79328 Chitinophaga pinensis 0 species 1424 79329 1 2029983 species 647 1 0 Chitinophagaceae bacterium 13 1 7 1100069 9352 order 0 Bacteroidetes Order II. Incertae sedis 118 Rhodothermaceae 0 61 6 1 family 9234 563843 3 0 Salinibacter 146918 1413 genus 1 2 0 Salinibacter ruber 1 146919 1410 species 0 1 no rank 3351 1196022 Rhodothermaceae bacterium RA 0 1 3351 species 1779382 49 0 Rhodothermus 29548 4409 genus 1 2 Rhodothermus marinus 0 4360 species 29549 1 Sphingobacteriia 0 7 24 1 class 16550 117747 0 Sphingobacteriales 37 1 23 200666 16543 order 22 1 16506 family 84566 Sphingobacteriaceae 0 45 4 1 3574 genus 423349 Mucilaginibacter 0 26 1 762 species 1234841 Mucilaginibacter sp. BJC16-A31 0 1 1550579 1411 species 0 Mucilaginibacter gotjawali 2617802 no rank 1375 1 0 Mucilaginibacter sp. PAMC 26640 0 species 1375 1300914 1 4 0 Solitalea 929509 genus 1040 1 2 1036 species 995 1 Solitalea canadensis 0 1649482 1128 genus 1 2 17 0 Pseudopedobacter 0 Pseudopedobacter saltans 1 151895 1111 species 84567 genus 4904 1 6 24 0 Pedobacter Pedobacter ginsengisoli 0 species 914 363852 1 Pedobacter steynii 0 species 859 430522 1 1 2628915 no rank 998 0 1727164 species 998 1 0 Pedobacter sp. PACM 27299 984 species 1034 1 0 Pedobacter heparinus 1075 species 188932 1 Pedobacter cryoconitis 0 6 1 4918 genus 28453 Sphingobacterium 0 36 4 2609468 no rank 4089 0 1 1538644 981 species 0 Sphingobacterium sp. ML3W Sphingobacterium sp. B29 0 907 species 1933220 1 1 964 species 743722 Sphingobacterium sp. 21 0 2003121 1237 species 1 0 Sphingobacterium sp. G1-14 Sphingobacterium mizutaii 0 species 793 1010 1 0 897 no rank 84568 1 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 1986952 species 897 768503 53518 class 1 59 184 0 Cytophagia 768507 order 53334 1 58 307 0 Cytophagales 16 1 family 30218 1853232 Hymenobacteraceae 0 100 1 8 89966 22885 genus 0 Hymenobacter 226 1 1446467 species 3061 0 Hymenobacter swuensis 1411621 3383 species 1 0 Hymenobacter sedentarius 0 5 2615202 no rank 16215 0 Hymenobacter sp. APR13 1 1356852 species 3908 3189 species 1484116 1 Hymenobacter sp. PAMC 26554 0 0 Hymenobacter sp. PAMC 26628 1484118 species 4614 1 0 Hymenobacter sp. DG25A 1385663 species 2021 1 1 species 2483 1385664 Hymenobacter sp. DG25B 0 1379908 4092 genus 1 4 34 0 Rufibacter 2 no rank 2424 2639626 0 Rufibacter sp. DG15C 0 species 962 1379909 1 1462 species 1379910 1 Rufibacter sp. DG31D 0 Rufibacter tibetensis 0 species 1634 512763 1 1 3 323449 3141 genus 0 Pontibacter 16 0 Pontibacter akesuensis 388950 1799 species 1 species 1326 400092 1 Pontibacter korlensis 0 2 Persicobacteraceae 0 1549 family 1853234 3 1 Persicobacter 0 4 2 1 1547 genus 59740 1 no rank 1543 2664020 0 1 species 1543 1085624 Persicobacter sp. JZB09 0 85 Cytophagaceae 0 family 12184 89373 17 1 genus 1040 861914 2 1 1 Fibrella 0 0 1 2620963 1039 no rank Fibrella sp. ES10-3-2-2 0 species 1039 1834519 1 1 2 120831 1807 genus 0 Dyadobacter 4 0 Dyadobacter fermentans 1 94254 species 1803 4 0 Runella 105 1399 genus 1 2 0 Runella slithyformis 1 106 1395 species 107 genus 6009 1 6 18 0 Spirosoma species 794 1211326 1 Spirosoma aerolatum 0 1379870 species 952 1 0 Spirosoma radiotolerans Spirosoma rigui 0 1359 species 564064 1 1 species 1667 1178516 Spirosoma montaniterrae 0 1 1219 species 2057025 Spirosoma sp. HA7 0 genus 882 978 2 1 14 Cytophaga 0 1 985 species 868 0 Cytophaga hutchinsonii 3 Leadbetterella 0 genus 962 319458 2 1 1 316068 959 species 0 Leadbetterella byssophila 0 2 929 family 2762301 2 1 genus 929 869806 Marivirga 0 20 1006 species 909 1 0 Marivirga tractuosa 0 Flammeovirgaceae 11 1 4 200667 family 2612 1 1067 no rank 340671 0 0 Flammeovirgaceae bacterium 311 1257021 1067 species 1 0 Flammeovirga 3 1 2 59739 genus 1534 2637820 no rank 1531 1 0 Flammeovirga sp. MY04 0 species 1531 1191459 1 0 Amoebophilaceae 1 1 3 1501348 527 family 1 genus 422 281119 0 1 species 422 281120 Candidatus Amoebophilus asiaticus 0 1 genus 104 273135 0 1 104 no rank 2641185 0 1 249402 species 104 0 Cardinium endosymbiont of Encarsia pergandiella 0 Bernardetiaceae 15 1 2 1937968 1295 family 0 1 1937972 1280 genus 0 Bernardetia litoralis 999 species 1280 1 10 1 family 3713 563798 Cyclobacteriaceae 0 26 2 Belliella 0 genus 796 232244 2 1 Belliella baltica 0 1 794 species 232259 8 0 Cyclobacterium 68288 genus 1504 1 3 0 Cyclobacterium amurskyense 1 320787 772 species Cyclobacterium marinum 0 1 species 724 104 2 1 717 genus 390846 Echinicola 0 2 1 715 species 390884 Echinicola vietnamensis 0 genus 670 246875 2 1 2 Algoriphagus 0 1 668 species 1727163 Algoriphagus sp. M8-2 0 123 Bacteroidia 0 class 2106220 200643 69 1 1970189 order 4946 1 10 2 0 Marinilabiliales 1471398 family 1649 1 3 33 0 Prolixibacteraceae genus 1616 1471399 2 1 5 Draconibacterium 0 Draconibacterium orientale 0 1 species 1611 1168034 1970190 family 842 2 0 Salinivirga 0 1 2 1 genus 842 1970191 841 species 1307839 1 Salinivirga cyanobacteriivorans 0 0 Marinilabiliaceae 6 1 3 558415 family 1060 genus 1054 1193324 2 1 4 Alkalitalea 0 0 Alkalitalea saponilacus 889453 1050 species 1 0 1 1573805 family 1393 0 1393 genus 2060722 1 0 Marinifilaceae bacterium SPP2 1717717 species 1393 1 171549 2101151 order 1 58 1108 0 Bacteroidales 38 Prevotellaceae 0 family 99700 171552 11 1 0 Prevotella 201 1 10 838 genus 99662 Prevotella ruminicola 0 species 4454 839 1 species 2630 1177574 1 Prevotella jejuni 0 no rank 1581 2638335 1 0 0 Prevotella sp. oral taxon 299 652716 1581 species 1 1 589436 species 2631 0 Prevotella fusca 1 3077 species 28132 Prevotella melaninogenica 0 Prevotella intermedia 0 1 species 73059 28131 3040 species 28129 1 Prevotella denticola 0 Prevotella enoeca 0 species 2266 76123 1 1 52227 6723 species 0 Prevotella dentalis 7360 family 2005520 6 0 2 1 2835 genus 294702 Proteiniphilum 0 26 0 Proteiniphilum saccharofermentans 1642647 species 2809 1 1 2 307628 2825 genus 0 Petrimonas 1 1 1642646 species 2824 0 Petrimonas mucosa 1 2 1784836 1700 genus 0 Fermentimonas 6 Fermentimonas caenicola 0 1694 species 1562970 1 7 1 244412 family 2005525 Tannerellaceae 0 123 26 Tannerella 0 genus 14612 195950 3 1 0 1 2620507 no rank 4726 0 Tannerella sp. oral taxon HOT-286 712710 species 4726 1 0 Tannerella forsythia 1 28112 9860 species 1 3 375288 229677 genus 0 Parabacteroides 73 0 1 no rank 156363 2649774 1 2025876 species 156363 0 Parabacteroides sp. CT06 species 73241 823 1 Parabacteroides distasonis 0 1853231 70815 family 1 3 3 0 Odoribacteraceae 2 Odoribacter 0 70812 genus 283168 2 1 70810 species 28118 1 Odoribacter splanchnicus 0 0 2005523 1875 family 2 0 Paludibacter 14 1 2 346096 genus 1875 Paludibacter propionicigenes 0 1861 species 185300 1 48 Rikenellaceae 0 123666 family 171550 5 1 0 Mucinivorans 9 1 2 1611681 1985 genus 1433126 species 1976 1 0 Mucinivorans hirudinis 0 Alistipes 74 1 2 239759 genus 121633 Alistipes finegoldii 0 1 121559 species 214856 543366 no rank 333046 4 0 1434 genus 511434 1 0 species 1434 511435 1 Candidatus Azobacteroides pseudotrichonymphae 0 3 541932 genus 909656 0 species 363965 821 1 Bacteroides vulgatus 0 0 Bacteroides dorei 1 357276 137451 species 1 376805 40516 species 0 Bacteroides salanitronis 0 no rank 1367 185291 1 1400053 species 1367 1 0 Bacteroidales bacterium CF 0 Barnesiellaceae 8 1 3 2005519 76553 family 90 Barnesiella 0 genus 76545 397864 2 1 Barnesiella viscericola 0 species 76455 397865 1 5999 family 171551 4 1 47 Porphyromonadaceae 0 3 1 genus 5952 836 Porphyromonas 0 7 Porphyromonas asaccharolytica 0 species 1706 28123 1 species 4239 837 1 Porphyromonas gingivalis 0 11 1 924930 family 815 Bacteroidaceae 0 47 42990 Bacteroides 0 924883 genus 816 10 1 1 173293 species 28116 Bacteroides ovatus 0 Bacteroides heparinolyticus 0 1 21904 species 28113 0 Bacteroides zoogleoformans 28119 species 24767 1 818 species 99115 1 0 Bacteroides thetaiotaomicron Bacteroides cellulosilyticus 0 1 species 73256 246787 species 27590 290053 1 Bacteroides helcogenes 0 47678 species 81772 1 0 Bacteroides caccae 0 Bacteroides caecimuris 1796613 species 116357 1 Bacteroides fragilis 0 species 263839 817 1 0 phylum 6394 142182 8 1 8 219685 6394 class 0 Gemmatimonadetes 21 112 0 Gemmatimonadales 219686 order 6373 1 7 1 6 219687 family 6261 0 Gemmatimonadaceae 48 Gemmatirosa 0 21 2 1 3075 genus 1706036 1 3054 species 861299 Gemmatirosa kalamazoonesis 0 3138 genus 173479 3 1 44 Gemmatimonas 0 1 1335 species 1379270 Gemmatimonas phototrophica 0 Gemmatimonas aurantiaca 0 1 1759 species 173480 5 phylum 2851 65842 0 Fibrobacteria 0 10 5 1 class 2851 204430 Fibrobacterales 0 3 4 1 order 2841 218872 Fibrobacteraceae 0 1 3 1 family 2838 204431 0 Fibrobacter 6 1 2 832 genus 2837 1 833 2831 species 0 Fibrobacter succinogenes 2 phylum 420 456828 0 26 0 Candidatus Cloacimonas 456826 420 genus 1 2 Candidatus Cloacimonas acidaminovorans 0 species 394 456827 1 3 2323 1046 no rank 0 3 1783234 1046 clade 0 0 254 phylum 95818 1 1 no rank 254 1895827 0 2056494 species 254 1 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 2 95901 clade 792 2 792 class 2497643 0 0 2 order 792 2497644 0 792 family 2497645 2 0 Candidatus Babela 1 1 2 1551504 genus 792 673862 species 791 1 0 Candidatus Babela massiliensis 0 1721 1783272 27889511 clade 0 2 1859062 597 no rank Thermobaculum 0 74 2 1 genus 597 262406 0 Thermobaculum terrenum 166501 523 species 1 Tenericutes 0 1 101 1 phylum 75688 544448 2 713063 7229 no rank 0 species 3596 1911684 1 Tenericutes bacterium MO-XQ 0 species 3633 1911683 1 Tenericutes bacterium MZ-XQ 0 31969 66131 class 1 96 76 0 Mollicutes 26092 order 2085 43 1 13 Mycoplasmatales 0 family 26079 2092 42 1 108 Mycoplasmataceae 0 0 12 8543 genus 2767358 708 species 2107 1 Mycoplasma pulmonis 0 0 Mycoplasma arginini 1 2094 species 690 species 360 2113 1 Mycoplasma californicum 0 1 29553 509 species 0 Mycoplasma bovirhinis 0 Mycoplasma pullorum 48003 478 species 1 1 species 793 171284 Mycoplasma cynos 0 2115 1061 species 1 0 Mycoplasma fermentans 0 Mycoplasma agalactiae 2110 948 species 1 1 species 1327 28903 Mycoplasma bovis 0 0 Mycoplasma synoviae 2109 species 331 1 species 451 2112 1 Mycoplasma bovigenitalium 0 1 29555 887 species 0 Mycoplasma canis 0 genus 1191 2129 2 1 2130 species 533 0 Ureaplasma urealyticum 1 134821 species 658 0 Ureaplasma parvum 0 Mycoplasma 396 1 27 2093 16237 genus 1 2100 572 species 0 Mycoplasma hyorhinis Mycoplasma gallisepticum 0 578 species 2096 1 0 Mycoplasma genitalium 1 2097 181 species Mycoplasma hominis 0 1 1403 species 2098 0 Mycoplasma haemofelis 1 29501 species 63 0 3 4999 species group 656088 1 species 2574 2102 Mycoplasma mycoides 0 0 Mycoplasma leachii 2105 1196 species 1 2095 species 1229 1 0 Mycoplasma capricolum 0 Mycoplasma dispar 86660 305 species 1 Mycoplasma putrefaciens 0 species 481 2123 1 Mycoplasma bovoculi 0 235 species 45362 1 0 Mycoplasma hyopneumoniae 1 2099 species 367 658 no rank 2683645 1 0 Mycoplasma sp. (ex Biomphalaria glabrata) 0 1 species 658 1749074 1 2128 328 species 0 Mycoplasma flocculare Mycoplasma yeatsii 0 1 species 971 51365 1 146 species 65123 Mycoplasma wenyonii 0 2104 species 151 1 0 Mycoplasma pneumoniae 1 species 869 29554 Mycoplasma canadense 0 1 136241 species 145 0 Mycoplasma haemocanis 0 Mycoplasma crocodyli 1 50052 390 species 1 57372 234 species 0 Mycoplasma suis Mycoplasma parvum 0 1 species 151 984991 0 Mycoplasma penetrans 28227 species 1104 1 1 2111 species 527 0 Mycoplasma arthritidis 0 Mycoplasma mobile 1 2118 species 863 1 120 species 171632 Mycoplasma ovis 0 1 13 186329 9672 order 0 Acholeplasmatales 8 37 Acholeplasmataceae 0 9664 family 2146 12 1 6833 genus 2147 5 1 147 Acholeplasma 0 1 species 2290 38986 Acholeplasma palmae 0 Acholeplasma brassicae 0 1 species 1245 61635 0 Acholeplasma oculi 1 35623 1572 species Acholeplasma laidlawii 0 species 1579 2148 1 50 0 Candidatus Phytoplasma 33926 genus 2794 1 6 1 85632 species group 798 0 species 798 59748 1 Candidatus Phytoplasma australiense 0 0 1 85630 749 species group 0 Candidatus Phytoplasma mali 1 37692 species 749 0 1197 species group 85620 3 1 species 313 229545 Aster yellows witches'-broom phytoplasma 0 202462 416 species 1 0 Maize bushy stunt phytoplasma 1 468 species 100379 Onion yellows phytoplasma 0 1 39 186328 30291 order 0 Entomoplasmatales 39 24 1 family 19940 2131 Spiroplasmataceae 0 65 Spiroplasma 0 821 23 1 19875 genus 2132 216936 species 1038 1 0 Spiroplasma diminutum Spiroplasma monobiae 0 1 species 654 2136 0 Spiroplasma mirum 1 2144 species 775 Spiroplasma litorale 0 1 species 932 216942 216946 982 species 1 0 Spiroplasma turonicum Spiroplasma citri 0 1 species 951 2133 0 2 2637901 no rank 1286 0 Spiroplasma sp. NBRC 100390 1 1914410 species 643 0 Spiroplasma sp. TU-14 1898044 species 643 1 species 1083 216935 1 Spiroplasma culicicola 0 0 Spiroplasma eriocheiris 315358 species 1044 1 802 species 1114980 1 Spiroplasma atrichopogonis 0 1 216933 728 species 0 Spiroplasma chrysopicola species 1373 216937 1 Spiroplasma floricola 0 1 762 species 362837 Spiroplasma cantharicola 0 216934 species 1049 1 0 Spiroplasma corruscae 668 species 216945 1 Spiroplasma syrphidicola 0 Spiroplasma sabaudiense 0 722 species 216944 1 0 Spiroplasma apis 2137 species 713 1 1 species 841 2145 Spiroplasma taiwanense 0 Spiroplasma kunkelii 0 1 923 species 47834 species 831 2139 1 Spiroplasma clarkii 0 Spiroplasma helicoides 0 species 897 216938 1 33925 10312 family 1 14 8 0 Entomoplasmataceae 1 8 46239 genus 7495 0 Mesoplasma 370 0 Mesoplasma syrphidae 1 225999 869 species 1 216427 726 species 0 Mesoplasma chauliocola 2149 805 species 1 0 Mesoplasma entomophilum 0 Mesoplasma lactucae 1 138853 species 1473 324078 species 791 1 0 Mesoplasma coleopterae Mesoplasma florum 0 1 species 1850 2151 0 Mesoplasma tabanidae 1 219745 species 611 14 Entomoplasma 0 2809 genus 46238 5 1 0 Entomoplasma melaleucae 1 81459 species 1247 Entomoplasma somnilux 0 species 591 215578 1 Entomoplasma freundtii 0 1 species 323 74700 1 634 species 214888 Entomoplasma luminosum 0 0 2 2327 no rank 2799557 2 1 genus 2327 1912503 Candidatus Izimaplasma 0 1 0 no rank 2326 2624196 1 2326 species 1541959 1 Candidatus Izimaplasma sp. HR1 0 0 Chloroflexi 22 1 47 200795 26503 phylum 68 Ardenticatenia 0 4778 class 1382928 5 1 1 4 1382929 4710 order 0 Ardenticatenales 37 39 Ardenticatenaceae 0 4673 family 1382930 3 1 28 0 Candidatus Promineofilum 1988031 4634 genus 1 2 1806508 species 4606 1 0 Candidatus Promineofilum breve 0 Caldilineae 10 1 5 475962 2308 class 5 0 Caldilineales 475963 2298 order 1 4 475964 2293 family 1 3 4 0 Caldilineaceae 2289 genus 233191 2 1 18 Caldilinea 0 0 Caldilinea aerophila 1 133453 species 2271 0 Chloroflexia 17 1 10 32061 5641 class 0 Chloroflexales 27 1 9 32064 order 5624 0 suborder 3443 1508595 4 1508635 family 3443 1 4 59 0 Roseiflexaceae genus 3384 120961 3 1 15 Roseiflexus 0 1 2609473 no rank 1689 0 species 1689 357808 1 Roseiflexus sp. RS-1 0 120962 1680 species 1 0 Roseiflexus castenholzii 1508594 suborder 2154 4 0 4 1106 family 2154 0 2154 genus 1107 4 1 140 Chloroflexus 0 738 species 152260 1 Chloroflexus aggregans 0 1108 1276 species 1 2 638 0 Chloroflexus aurantiacus strain 638 480224 1 Chloroflexus sp. Y-400-fl 0 17 Thermomicrobia 0 class 2298 189775 9 1 4 1785 subclass 85000 0 0 Sphaerobacterales 26 1 4 85001 order 1785 0 suborder 1759 255728 3 family 1759 85002 3 1 18 Sphaerobacteraceae 0 2056 1741 genus 1 2 35 0 Sphaerobacter Sphaerobacter thermophilus 0 species 1706 2057 1 4 0 Thermomicrobiales 189776 496 order 1 4 189777 492 family 1 3 15 0 Thermomicrobiaceae 499 477 genus 1 2 1 0 Thermomicrobium 0 Thermomicrobium roseum 500 476 species 1 Anaerolineae 0 8 8 1 6665 class 292625 1 7 292629 order 6657 0 Anaerolineales 6 6 1 family 6651 292628 Anaerolineaceae 0 35 Anaerolinea 0 5 2 1 genus 1988 233189 Anaerolinea thermophila 0 1983 species 167964 1 2 Brevefilum 0 959 genus 2019482 2 1 0 Brevefilum fermentans 1986204 957 species 1 1324991 no rank 3669 1 0 species 3669 1889813 1 Anaerolineaceae bacterium oral taxon 439 0 9 1 class 4791 301297 Dehalococcoidia 0 14 2296 genus 670486 3 1 25 Dehalogenimonas 0 1 1839801 species 1304 0 Dehalogenimonas formicexedens species 967 552810 1 Dehalogenimonas lykanthroporepellens 0 Dehalococcoidales 0 3 5 1 order 2481 1202465 1 4 1202464 family 2478 0 Dehalococcoidaceae 3 3 0 Dehalococcoides 61434 genus 2475 1 3 0 237581 408 no rank 1 0 Dehalococcoides sp. UCH007 1522671 408 species 1 1 61435 species 2064 0 Dehalococcoides mccartyi 5 67819 1108 phylum 0 Fimbriimonadia 0 7 5 1 class 1108 1663419 11 Fimbriimonadales 0 1101 order 1663425 4 1 1 3 1663426 family 1090 0 Fimbriimonadaceae 6 2 1 genus 1084 1005038 Fimbriimonas 0 2 1 species 1082 1005039 Fimbriimonas ginsengisoli 0 phylum 8471540 201174 655 1 136 Actinobacteria 0 8 0 Acidimicrobiia 84992 2077 class 1 7 Acidimicrobiales 0 86 6 1 2069 order 84993 0 Acidimicrobiaceae 15 1 3 84994 family 370 2 1 genus 355 53634 Acidimicrobium 0 3 species 352 53635 1 Acidimicrobium ferrooxidans 0 2 2448023 family 1613 0 1613 genus 682522 2 1 26 Ilumatobacter 0 467094 species 1587 1 0 Ilumatobacter coccineus Coriobacteriia 0 1803 33 1 class 1243295 84998 order 1092306 84999 14 1 861 Coriobacteriales 0 Coriobacteriaceae 0 1513 6 1 1057222 family 84107 6370 no rank 84113 1 0 Coriobacteriaceae bacterium 68-1-3 0 species 6370 1531429 1 102106 1044952 genus 1 2 189 0 Collinsella species 1044763 74426 1 Collinsella aerofaciens 0 Coriobacterium 0 22 2 1 genus 4387 33870 Coriobacterium glomerans 0 4365 species 33871 1 1 7 1643824 family 34223 0 Atopobiaceae 575 1 2767353 genus 2257 0 1 species 2257 1382 Atopobium parvulum 0 373 Olsenella 0 genus 31376 133925 4 1 0 Olsenella uli 1 133926 9386 species 1 1805478 species 15844 0 Olsenella sp. Marseille-P2300 1 5773 no rank 2638792 0 5773 species 712411 1 Olsenella sp. oral taxon 807 0 0 Atopobium 1380 genus 15 1 1640 Eggerthellales 0 149186 order 1643822 18 1 1 17 1643826 147546 family 0 Eggerthellaceae 18075 genus 49890 644652 3 1 176 Gordonibacter 0 36547 species 1335613 1 Gordonibacter urolithinfaciens 0 1 1841863 species 13167 0 Gordonibacter massiliensis genus 1206 84162 2 1 1 Cryptobacterium 0 Cryptobacterium curtum 0 species 1205 84163 1 genus 5237 79603 2 1 9 Denitrobacterium 0 79604 5228 species 1 0 Denitrobacterium detoxificans 6 Adlercreutzia 0 21466 genus 447020 2 1 446660 21460 species 1 0 Adlercreutzia equolifaciens 84111 29801 genus 1 3 273 0 Eggerthella 1 84112 24634 species 0 Eggerthella lenta 1 4894 no rank 2648737 0 Eggerthella sp. YY7918 0 species 4894 502558 1 genus 3536 1981050 2 1 3 Phoenicibacter 0 0 Phoenicibacter massiliensis 1944646 3533 species 1 20 0 Slackia 84108 genus 18335 1 2 0 Slackia heliotrinireducens 1 84110 18315 species Thermoleophilia 0 10 5 1 class 3164 1497346 4 1 3154 order 588673 Solirubrobacterales 0 86 25 Conexibacteraceae 0 3068 family 320583 3 1 191494 3043 genus 1 2 72 0 Conexibacter 0 Conexibacter woesei 191495 2971 species 1 4 703 no rank 1752188 0 Actinobacteria bacterium IMCC19121 0 1 264 species 1848754 0 Actinobacteria bacterium IMCC25003 1 1848255 species 176 species 107 1848755 1 Actinobacteria bacterium IMCC26077 0 Actinobacteria bacterium IMCC26103 0 1 species 156 1848756 1760 class 7218987 1 599 8524 0 Actinobacteria order 2786 1643684 4 1 17 Nakamurellales 0 3 1 family 2769 85031 Nakamurellaceae 0 31 Nakamurella 0 63 2 1 2738 genus 53460 0 Nakamurella multipartita 1 53461 2675 species 85010 80288 order 1 42 136 0 Pseudonocardiales 1 41 2070 family 80152 0 Pseudonocardiaceae 1096 1 2 674734 genus 2503 0 Alloactinosynnema 4 0 1 2636053 2499 no rank 0 Alloactinosynnema sp. L-07 1653480 2499 species 1 2 1 genus 3105 1835 Saccharopolyspora 0 17 1 1836 species 3088 0 Saccharopolyspora erythraea 0 Actinosynnema 191 1 3 40566 9712 genus 1 4898 species 42197 Actinosynnema pretiosum 0 1 species 4623 40567 Actinosynnema mirum 0 2 1 genus 2838 165301 Lentzea 0 18 Lentzea guizhouensis 0 1 2820 species 1586287 Saccharothrix 0 17 2 1 genus 3901 2071 1 species 3884 103731 Saccharothrix espanaensis 0 genus 4660 43356 2 1 20 Kutzneria 0 1 43357 4640 species 0 Kutzneria albida 1 6 65496 10291 genus 0 Actinoalloteichus 224 0 Actinoalloteichus hymeniacidonis 340345 1703 species 1 Actinoalloteichus hoggarensis 0 1 species 1996 1470176 1 2134 species 1612552 Actinoalloteichus sp. ADI127-7 0 0 no rank 4234 2644606 2 Actinoalloteichus sp. GBA129-24 0 2159 species 1612551 1 0 Actinoalloteichus sp. AHMU CJ021 2072503 species 2075 1 4 Prauserella 0 genus 1690 142577 2 1 species 1686 530584 1 Prauserella marina 0 0 Saccharomonospora 12 1 2 1851 780 genus Saccharomonospora viridis 0 species 768 1852 1 20537 genus 1813 7 1 339 Amycolatopsis 0 Amycolatopsis mediterranei 0 1 3995 species 33910 0 2 5236 no rank 2618356 1 2526 species 1911175 Amycolatopsis sp. BJA-103 0 2710 species 1896961 1 Amycolatopsis sp. AA4 0 Amycolatopsis japonica 0 1 2416 species 208439 species 3036 1814 1 Amycolatopsis methanolica 0 0 Amycolatopsis orientalis 1 31958 species 5515 Pseudonocardia 0 363 8 1 14941 genus 1847 0 6 2619320 12466 no rank 0 Pseudonocardia sp. EC080619-01 1096856 species 2011 1 0 Pseudonocardia sp. EC080625-04 1 1096868 1793 species 2394 species 1690815 1 Pseudonocardia sp. HH130630-07 0 0 Pseudonocardia sp. EC080610-09 1688404 2011 species 1 1 1849 species 1641402 Pseudonocardia sp. HH130629-09 0 0 Pseudonocardia sp. AL041005-10 1 445576 2408 species Pseudonocardia dioxanivorans 0 species 2112 240495 1 5 0 Kibdelosporangium 2029 genus 4098 1 2 Kibdelosporangium phytohabitans 0 1 species 4093 860235 1 82 85011 229726 order 0 Streptomycetales 552 1310 Streptomycetaceae 0 family 229174 2062 81 1 0 Streptomyces 7842 1 75 1883 212436 genus 0 Streptomyces pristinaespiralis 1 38300 2237 species 1889 species 2191 1 0 Streptomyces ambofaciens Streptomyces violaceusniger 0 species 3162 68280 1 1 92644 species 2902 0 Streptomyces malaysiensis 0 Streptomyces albireticuli 1940 species 2481 1 0 Streptomyces sp. S10(2016) 1783515 2365 species 1 species group 5495 1477431 2 0 1 1902 species 2865 0 Streptomyces coelicolor 0 Streptomyces sampsonii 42239 species 2630 1 1 2808 species 1437453 Streptomyces leeuwenhoekii 0 0 Streptomyces niveus 1 193462 species 2074 2763 species 1969 1 Streptomyces chartreusis 0 0 Streptomyces rubrolavendulae 285473 species 2015 1 1 2561 species 1914 Streptomyces lavendulae 0 0 Streptomyces parvulus 146923 species 3165 1 1 species 4285 54571 Streptomyces venezuelae 0 0 Streptomyces alboflavus 67267 2955 species 1 1 species 5789 1888 Streptomyces albus 0 2593676 60387 no rank 24 0 1 444103 species 2797 0 Streptomyces sp. CNQ-509 1 species 1837 1837283 Streptomyces sp. S8 0 1 1961713 species 2606 0 Streptomyces sp. MOE7 Streptomyces sp. CCM_MD2014 0 species 2298 1561022 1 Streptomyces sp. PAMC 26508 0 1715 species 1265601 1 1 3145 species 1262452 Streptomyces sp. 769 0 1661694 2309 species 1 0 Streptomyces sp. Tue 6075 species 3311 1725411 1 Streptomyces sp. CdTB01 0 1 2117 species 234612 Streptomyces sp. TN58 0 1 1649184 2008 species 0 Streptomyces sp. CFMR 7 0 Streptomyces sp. WAC00288 2094021 2137 species 1 0 Streptomyces sp. FR-008 206662 species 2571 1 0 Streptomyces sp. Sge12 1972846 species 2387 1 1 species 1753 1984801 Streptomyces sp. CLI2509 0 1 1495638 3644 species 0 Streptomyces sp. M56 1 1812480 2776 species 0 Streptomyces sp. fd1-xmd Streptomyces sp. Mg1 0 2703 species 465541 1 1 1964449 species 2318 0 Streptomyces sp. 3211 Streptomyces sp. RTd22 0 1 3258 species 1841249 0 Streptomyces sp. SAT1 1 1849967 2555 species 0 Streptomyces sp. P3 1 2135430 species 2906 1 1751294 species 2325 0 Streptomyces sp. 4F 2059884 3071 species 1 0 Streptomyces sp. CMB-StM0423 species 1840 862751 1 Streptomyces sp. SirexAA-E 0 2837 species 164348 1 Streptomyces puniciscabiei 0 1 68214 species 2659 0 Streptomyces griseochromogenes 1 species 2532 1901 Streptomyces clavuligerus 0 0 Streptomyces alfalfae 1642299 2185 species 1 0 Streptomyces peucetius 1 1950 1892 species 1916 species 2550 1 0 Streptomyces lividans 1 species 3750 29303 Streptomyces cattleya 0 1930 species 2796 1 0 Streptomyces scabiei species 3154 1915 1 Streptomyces lincolnensis 0 1935 2735 species 1 0 Streptomyces violaceoruber species 2629 1907 1 Streptomyces glaucescens 0 2682 species 1971 1 Streptomyces noursei 0 Streptomyces sp. XZHG99 0 1 2411 species 2049881 0 2 4217 species group 629295 0 1 1482558 species subgroup 2173 species 2173 1908 1 Streptomyces globisporus 0 0 2044 species subgroup 1482596 1 Streptomyces griseus 0 species 2044 1911 1 Streptomyces fulvissimus 0 species 1993 68202 1 Streptomyces collinus 0 1 2565 species 42684 species 4137 379067 1 Streptomyces bingchenggensis 0 0 Streptomyces albulus 1 68570 species 2870 Streptomyces pactum 0 species 4903 68249 1 1 7149 species 47763 Streptomyces lydicus 0 0 Streptomyces hygroscopicus 1912 6594 species 1 0 Streptomyces pratensis 1 1169025 1226 species 33903 species 2190 1 0 Streptomyces avermitilis 0 Streptomyces autolyticus 1 75293 species 3212 3064 species 362257 1 Streptomyces vietnamensis 0 68192 species 2444 1 0 Streptomyces cyaneogriseus Streptomyces xiamenensis 0 1 2489 species 408015 1 2288 species 1616117 Streptomyces formicae 0 1 1355015 species 1643 0 Streptomyces pluripotens 1926 species 2622 1 0 Streptomyces reticuli Streptomyces xinghaiensis 0 1 species 2132 1038928 species 2409 553510 1 Streptomyces gilvosporeus 0 205 0 Kitasatospora 2063 15428 genus 1 5 1 2633591 4450 no rank 0 0 Kitasatospora sp. MMS16-BH015 1 2018025 4450 species 1 species 3250 68173 Kitasatospora albolonga 0 1894 species 3300 1 0 Kitasatospora aureofaciens Kitasatospora setae 0 1 4223 species 2066 388 0 Bifidobacteriales 85004 order 6299040 1 24 0 Bifidobacteriaceae 10758 1 23 31953 6298652 family 1 2769 genus 2701 0 1 2702 species 2769 0 Gardnerella vaginalis 1678 genus 6281793 1 19 2742 0 Bifidobacterium Bifidobacterium dentium 0 species 15452 1689 1 species 1101375 28026 1 Bifidobacterium pseudocatenulatum 0 1 species 197539 1685 Bifidobacterium breve 0 0 Bifidobacterium scardovii 158787 species 11050 1 1694 6459 species 1 0 Bifidobacterium pseudolongum Bifidobacterium asteroides 0 1 species 2630 1684 1 1680 species 2408337 0 Bifidobacterium adolescentis species 1209 1687 1 Bifidobacterium coryneforme 0 Bifidobacterium bifidum 0 1 species 63991 1681 1774 species 638619 1 Bifidobacterium actinocoloniiforme 0 1 28025 4519 species 0 Bifidobacterium animalis Bifidobacterium choerinum 0 4638 species 35760 1 4527 species 33905 1 Bifidobacterium thermophilum 0 2 1 543435 species 1686 Bifidobacterium catenulatum 0 190637 0 Bifidobacterium kashiwanohense 1 630129 352798 subspecies 0 Bifidobacterium angulatum 1683 51756 species 1 Bifidobacterium longum 0 1 1859110 species 216816 1691 1250 species 1 0 Bifidobacterium indicum 0 1 196082 genus 2320 Parascardovia denticolens 0 2320 species 78258 1 0 196081 genus 1012 1 0 Scardovia inopinata 1 78259 1012 species Catenulisporales 0 24 4 1 order 4824 414714 1 3 414877 family 4800 0 Catenulisporaceae 41 38 0 Catenulispora 414878 genus 4759 1 2 1 304895 species 4721 0 Catenulispora acidiphila 0 622450 order 1825 3 0 Actinopolysporaceae 18 1 3 622451 1825 family 24 0 Actinopolyspora 1849 genus 1807 1 2 1 1783 species 414996 Actinopolyspora erythraea 0 Actinomycetales 0 46 19 1 order 42068 2037 family 42022 2049 18 1 2543 Actinomycetaceae 0 2050 1853 genus 1 2 73 0 Mobiluncus Mobiluncus curtisii 0 1 species 1780 2051 0 1 genus 6891 2529408 1 52773 species 6891 0 Actinomyces meyeri 1 2 1653174 genus 1101 0 Actinotignum 8 0 Actinotignum schaalii 1 59505 1093 species genus 25665 1654 9 1 326 Actinomyces 0 0 Actinomyces gaoshouyii 1960083 1596 species 1 1 1852377 species 8854 0 Actinomyces pacaensis 1912795 species 590 1 0 Actinomyces sp. VUL4_3 0 3 2609248 8013 no rank 0 Actinomyces sp. Chiba101 1851395 species 2230 1 0 Actinomyces sp. oral taxon 414 1 712122 species 2940 0 Actinomyces sp. oral taxon 897 1 2081702 2843 species 0 Actinomyces radicidentis 1 111015 3032 species 1 3254 species 544580 Actinomyces oris 0 1069494 genus 3285 1 2 11 0 Trueperella 3274 species 1661 1 Trueperella pyogenes 0 0 1 28263 genus 684 Arcanobacterium haemolyticum 0 684 species 28264 1 order 40518 85008 20 1 61 Micromonosporales 0 family 40457 28056 19 1 732 Micromonosporaceae 0 261 0 Micromonospora 1873 9549 genus 1 4 0 Verrucosispora maris 1 1003110 species 2738 1 no rank 3434 2617518 0 Micromonospora sp. L5 0 species 3434 648999 1 47850 3116 species 1 0 Micromonospora aurantiaca 0 Actinoplanes 379 1 6 1865 16655 genus 196914 2853 species 1 0 Actinoplanes friuliensis 3 no rank 10150 2626549 0 2033844 3144 species 1 0 Actinoplanes sp. SE50 1 species 3862 649831 Actinoplanes sp. N902-109 0 3144 species 134676 1 Actinoplanes sp. SE50/110 0 1866 3273 species 1 0 Actinoplanes missouriensis Plantactinospora 0 103 4 1 9575 genus 673534 0 9472 no rank 2631981 3 Plantactinospora sp. BB1 0 2677 species 2071627 1 Plantactinospora sp. BC1 0 species 2925 2108470 1 Plantactinospora sp. KBS50 0 species 3870 2024580 1 1 3 168694 3941 genus 0 Salinispora 33 0 Salinispora tropica 168695 species 1794 1 1 species 2114 168697 Salinispora arenicola 0 1 84593 genus 5 0 Verrucosispora 7 1 order 9210 85013 Frankiales 0 19 0 Frankiaceae 191 1 6 74712 family 9191 168 Frankia 0 genus 9000 1854 5 1 0 2632575 2438 no rank 1 0 Frankia sp. EAN1pec 1 298653 2438 species 0 Frankia alni 1859 2438 species 1 Frankia inefficax 0 species 2793 298654 1 0 Frankia casuarinae 1 106370 species 1163 0 1643818 no rank 1476 2 2 1 genus 1476 147067 Thermobispora 0 8 Thermobispora bispora 0 species 1468 2006 1 1 8 1643682 order 8780 0 Geodermatophilales 37 0 Geodermatophilaceae 143 1 7 85030 8743 family 3758 genus 88138 2 1 86 Modestobacter 0 3672 species 477641 1 Modestobacter marinus 0 3055 genus 1860 2 1 75 Geodermatophilus 0 0 Geodermatophilus obscurus 1861 species 2980 1 2 1 genus 1787 38501 Blastococcus 0 18 Blastococcus saxobsidens 0 1769 species 138336 1 85007 218733 order 1 163 1473 0 Corynebacteriales 1762 84316 family 1 57 334 0 Mycobacteriaceae 1763 47515 genus 1 34 3575 0 Mycobacterium 29311 843 species 1 0 Mycobacterium haemophilum 0 9762 species group 120793 8 1 4 1767 2622 species 0 Mycobacterium intracellulare 587 0 Mycobacterium yongonense 1203599 455 subspecies 1 Mycobacterium indicus pranii 0 subspecies 529 35617 1 0 Mycobacterium chimaera 1 222805 subspecies 1051 1925 species 339268 1 Mycobacterium colombiense 0 species 1252 701042 1 Mycobacterium marseillense 0 Mycobacterium paraintracellulare 0 species 566 1138383 1 Mycobacterium avium 0 species 3397 1764 1 0 4 77643 species group 3300 1 3 1773 2452 species 0 Mycobacterium tuberculosis 949 1 biotype 721 33894 Mycobacterium africanum 0 1 1765 biotype 782 0 Mycobacterium bovis Mycobacterium canettii 0 1 species 848 78331 0 Mycobacterium liflandii 1 261524 species 1305 0 Mycobacterium leprae 1769 species 370 1 1 2249310 species group 1628 0 0 Mycobacterium shigaense 1 722731 species 1628 0 Mycobacterium ulcerans 1 1809 1381 species 0 Mycobacterium kansasii 1 1768 species 2008 0 13 19533 no rank 2642494 Mycobacterium sp. PYR15 0 1 species 1722 2051552 1 212767 1377 species 0 Mycobacterium sp. JS623 0 Mycobacterium sp. YC-RL4 1682113 species 1931 1 1 species 2015 1920667 Mycobacterium sp. WY10 0 species 1147 189918 1 Mycobacterium sp. KMS 0 0 Mycobacterium sp. NRRL B-3805 1 1570328 1974 species species 1414 164757 1 Mycobacterium sp. JLS 0 Mycobacterium sp. MOTT36Y 0 1 489 species 1168287 0 Mycobacterium sp. QIA-37 1 1561223 1072 species 1545728 1443 species 1 0 Mycobacterium sp. EPa45 species 1436 1273687 1 Mycobacterium sp. VKM Ac-1817D 0 1879023 2414 species 1 0 Mycobacterium sp. djl-10 0 Mycobacterium sp. MCS 1 164756 species 1099 1557 species 1781 1 Mycobacterium marinum 0 0 Mycobacterium dioxanotrophicus 1 482462 2253 species 1073531 3256 genus 2 0 Mycobacterium sinense 0 species 1740 875328 1 0 Mycobacterium terrae 1 1788 1516 species 0 5 670516 genus 7222 1 1296 species 1520670 Mycobacterium stephanolepidis 0 1 83262 1091 species 0 Mycobacterium immunogenum 0 Mycobacterium saopaulense 1578165 1501 species 1 0 Mycobacterium chelonae 1774 species 873 1 2461 species 36809 1 Mycobacterium abscessus 0 Hoyosella 0 1 2 1 genus 731 697025 Hoyosella subflava 0 730 species 639313 1 13 1866885 genus 25258 0 1 36814 1312 species 0 Mycobacterium rhodesiae 0 Mycobacterium neoaurum 1 1795 1974 species Mycobacterium phlei 0 2518 species 1771 1 Mycobacterium gilvum 0 1733 species 1804 1 1 1810 species 1909 0 Mycobacterium vaccae 1 1791 species 2267 0 Mycobacterium aurum 0 Mycobacterium thermoresistibile 1 1797 2179 species 1 species 1646 1766 Mycobacterium fortuitum 0 Mycobacterium litorale 0 1 1749 species 758802 1715 species 1800 1 Mycobacterium chubuense 0 1 1772 species 2125 0 Mycobacterium smegmatis 134601 species 2280 1 0 Mycobacterium goodii 0 Mycobacterium vanbaalenii 110539 species 1851 1 0 Nocardiaceae 297 1 31 85025 49421 family 0 Rhodococcus 1183 1 23 1827 28547 genus 1833 1165 species 1 0 Rhodococcus erythropolis Rhodococcus hoagii 0 1805 species 43767 1 0 Rhodococcus ruber 1 1830 species 1716 Rhodococcus aetherivorans 0 1 species 1730 191292 1 1641 species 132919 Rhodococcus jostii 0 0 Rhodococcus opacus 37919 3827 species 1 Rhodococcus rhodochrous 0 1 species 1287 1829 0 Rhodococcus fascians 1828 species 1072 1 no rank 11391 192944 12 0 Rhodococcus sp. BH4 0 species 380 1807790 1 1 1242 species 1653478 Rhodococcus sp. PBTS 1 0 1 1033922 species 1853 0 Rhodococcus sp. WB1 0 Rhodococcus sp. B7740 1 1564114 species 1246 0 Rhodococcus sp. H-CA8f 1727214 species 921 1 0 Rhodococcus sp. p52 935199 species 1036 1 0 Rhodococcus sp. MTM3W5.2 1805827 1385 species 1 1 1653479 1041 species 0 Rhodococcus sp. PBTS 2 0 Rhodococcus sp. 2G 1570939 species 830 1 1 502 species 679318 Rhodococcus sp. WMMA185 0 1 480 species 1045808 Rhodococcus sp. YL-1 0 1 1723645 475 species 0 Rhodococcus sp. 008 1 334542 species 581 0 Rhodococcus qingshengii 0 Rhodococcus pyridinivorans 1 103816 1149 species 7 1 20577 genus 1817 Nocardia 0 346 1 3050 species 37329 Nocardia farcinica 0 37332 3098 species 1 0 Nocardia seriolae species 3135 455432 1 Nocardia terpenica 0 37326 species 4544 1 0 Nocardia brasiliensis 1 135487 species 4227 0 Nocardia cyriacigeorgica species 2177 37330 1 Nocardia nova 0 85026 family 9375 1 9 45 0 Gordoniaceae 1 8 2053 9330 genus 0 Gordonia 238 0 Gordonia iterans 1 1004901 1252 species 0 Gordonia phthalatica 1 1136941 species 1143 1 species 1440 84595 Gordonia polyisoprenivorans 0 1 1217 species 2054 Gordonia bronchialis 0 Gordonia terrae 0 1 species 1467 2055 0 2657482 no rank 2573 2 1 species 1488 337191 Gordonia sp. KTR9 0 1085 species 2059875 1 Gordonia sp. YC-JH1 0 10 0 Dietziaceae 85029 2423 family 1 4 genus 2413 37914 3 1 25 Dietzia 0 0 1 2617939 1239 no rank Dietzia sp. oral taxon 368 0 species 1239 712270 1 0 Dietzia timorensis 1 499555 species 1149 0 697024 562 no rank 2 1847725 genus 562 1 2 3 0 Lawsonella 1528099 559 species 1 0 Lawsonella clevelandensis Corynebacteriaceae 0 601 52 1 family 66817 1653 1885 0 Corynebacterium 1716 66216 genus 1 51 species 1113 1697 1 Corynebacterium ammoniagenes 0 Corynebacterium ureicelerivorans 0 1366 species 401472 1 1117 species 191610 1 Corynebacterium atypicum 0 Corynebacterium glaucum 0 1508 species 187491 1 1 43771 1451 species 0 Corynebacterium urealyticum 1 1408191 985 species 0 Corynebacterium deserti 0 Corynebacterium humireducens 1 1223514 species 1701 0 Corynebacterium aurimucosum 169292 species 1937 1 0 Corynebacterium sphenisci 191493 1928 species 1 0 Corynebacterium phocae 1 161895 1219 species 849 species 65058 1 Corynebacterium ulcerans 0 0 Corynebacterium epidermidicanis 1 1050174 576 species Corynebacterium uterequi 0 1 1481 species 1072256 1 92706 species 833 0 [Brevibacterium] flavum 2624378 no rank 1682 2 0 Corynebacterium sp. ATCC 6931 0 1 species 804 1487956 Corynebacterium sp. NML98-0116 0 1 species 878 702967 0 Corynebacterium imitans 156978 1269 species 1 1 1721 845 species 0 Corynebacterium callunae Corynebacterium argentoratense 0 1 794 species 42817 Corynebacterium glyciniphilum 0 species 1392 1404244 1 1 459 species 571915 Corynebacterium mustelae 0 Corynebacterium kutscheri 0 1 species 324 35755 1309 species 161899 1 Corynebacterium singulare 0 Corynebacterium variabile 0 species 1692 1727 1 1121358 species 1509 1 0 Corynebacterium doosanense Corynebacterium stationis 0 1 species 1039 1705 Corynebacterium striatum 0 species 2575 43770 1 Corynebacterium glutamicum 0 1 1725 species 1718 0 Corynebacterium camporealensis 161896 1351 species 1 0 Corynebacterium frankenforstense 1 1230998 species 2650 1 35757 528 species 0 Corynebacterium cystitidis 1 species 828 1717 Corynebacterium diphtheriae 0 Corynebacterium maris 0 1 species 1225 575200 38289 species 2252 1 0 Corynebacterium jeikeium 1 28028 885 species 0 Corynebacterium flavescens species 1967 108486 1 Corynebacterium falsenii 0 Corynebacterium aquilae 0 1 1131 species 203263 Corynebacterium lactis 0 species 963 1231000 1 1 152794 1731 species 0 Corynebacterium efficiens Corynebacterium terpenotabidum 0 1 species 1092 89154 1 146827 species 1991 0 Corynebacterium simulans 1 161879 species 564 0 Corynebacterium kroppenstedtii Corynebacterium pseudotuberculosis 0 1 816 species 1719 379 species 1652495 1 Corynebacterium crudilactis 0 Corynebacterium testudinoris 0 1 1000 species 136857 0 Corynebacterium marinum 1 349751 1654 species 1 38305 species 2823 0 Corynebacterium vitaeruminis 1 654 species 258224 Corynebacterium resistens 0 Corynebacterium casei 0 860 species 160386 1 1 225326 species 2309 0 Corynebacterium halotolerans 3 0 Segniliparaceae 316606 family 819 1 3 286801 816 genus 1 2 5 0 Segniliparus 1 811 species 286802 Segniliparus rotundus 0 85028 3527 family 1 4 16 0 Tsukamurellaceae genus 3511 2060 3 1 42 Tsukamurella 0 Tsukamurella paurometabola 0 1350 species 2061 1 0 Tsukamurella tyrosinosolvens 1 57704 species 2119 0 Streptosporangiales 126 1 16 85012 26308 order family 10037 83676 7 1 156 Nocardiopsaceae 0 1 2 83677 genus 1411 0 Thermobifida 28 0 Thermobifida fusca 2021 species 1383 1 167 0 Nocardiopsis 2013 8470 genus 1 4 53437 species 2089 1 0 Nocardiopsis alba 1 species 2570 280236 Nocardiopsis gilva 0 species 3644 2014 1 Nocardiopsis dassonvillei 0 0 Streptosporangiaceae 108 1 5 2004 11328 family genus 7254 83681 2 1 58 Nonomuraea 0 0 1 2593643 7196 no rank 1909395 7196 species 1 0 Nonomuraea sp. ATCC 55076 Streptosporangium 0 61 2 1 3966 genus 2000 Streptosporangium roseum 0 species 3905 2001 1 88 Thermomonosporaceae 0 4817 family 2012 3 1 Thermomonospora 0 127 2 1 genus 4729 2019 1 4602 species 2020 Thermomonospora curvata 0 1 4 622452 2549 order 0 Kineosporiales 7 83778 2542 family 1 3 94 0 Kineosporiaceae Kineococcus 0 24 2 1 genus 2448 33981 Kineococcus radiotolerans 0 species 2424 131568 1 4 1 order 583 1643683 Acidothermales 0 1 1 3 85032 family 582 0 Acidothermaceae 2 3 Acidothermus 0 genus 580 28048 2 1 1 species 577 28049 Acidothermus cellulolyticus 0 1 33 85009 order 43302 0 Propionibacteriales 242 0 Nocardioidaceae 248 1 13 85015 family 15936 2044 genus 2574 1 2 23 0 Pimelobacter 2045 2551 species 1 0 Pimelobacter simplex 2040 genus 1594 1 2 38 0 Aeromicrobium 0 Aeromicrobium erythreum 2041 1556 species 1 116071 genus 2272 1 2 17 0 Micropruina 1 species 2255 75385 Micropruina glycogenica 0 Nocardioides 0 70 4 1 6588 genus 1839 Nocardioides sp. 78 0 1 2178 species 2045452 2615069 no rank 2304 1 0 species 2304 196162 1 Nocardioides sp. JS614 0 1 2036 species 450734 Nocardioides dokdonensis 0 genus 2660 182639 2 1 53 Kribbella 0 0 Kribbella flavida 182640 species 2607 1 342 0 Propionibacteriaceae 31957 family 27124 1 19 2 1 3337 genus 1912215 Acidipropionibacterium 0 19 Acidipropionibacterium acidipropionici 0 1 3318 species 1748 1 2 29404 1947 genus 0 Microlunatus 12 species 1935 29405 1 Microlunatus phosphovorus 0 0 Cutibacterium 16 1 4 1912216 4448 genus 0 Cutibacterium granulosum 33011 species 1017 1 0 Cutibacterium avidum 1 33010 species 2538 877 species 1747 1 Cutibacterium acnes 0 0 1 genus 1629 2801844 1 1750 species 1629 0 Pseudopropionibacterium propionicum 3 1 genus 4736 1743 Propionibacterium 0 177 1 2608905 no rank 943 0 943 species 671223 1 Propionibacterium sp. oral taxon 193 0 0 Propionibacterium freudenreichii 1 1744 species 3616 203133 1582 genus 1 0 2633994 no rank 1582 1 0 0 Propionimicrobium sp. Marseille-P3275 1871034 1582 species 1 1 5 72763 9103 genus 0 Tessaracoccus 65 0 2635419 no rank 2130 1 0 Tessaracoccus sp. T2.5-30 1909732 species 2130 1 1 1332264 2718 species 0 Tessaracoccus aquimaris 0 Tessaracoccus flavescens 399497 2153 species 1 1 2037 species 1610493 Tessaracoccus flavus 0 Candidatus Nanopelagicales 0 11 12 1 2526 order 2039638 0 11 family 2515 2162846 Candidatus Nanopelagicus 0 5 4 1 genus 667 2039639 394 species 1884916 1 Candidatus Nanopelagicus abundans 0 1884634 species 100 1 0 Candidatus Nanopelagicus limnes 1 1884915 species 168 0 Candidatus Nanopelagicus hibericus 20 0 Candidatus Planktophila 622681 1848 genus 1 7 1 1884904 species 167 0 Candidatus Planktophila sulfonica 0 Candidatus Planktophila vernalis 1 1884907 species 223 1 232 species 573600 Candidatus Planktophila limnetica 0 0 Candidatus Planktophila versatilis 1 1884905 species 369 1884914 species 465 1 0 Candidatus Planktophila dulcis 0 Candidatus Planktophila lacus 1884913 372 species 1 193139 order 85006 146 1 1631 Micrococcales 0 family 718 85018 3 1 1 Dermatophilaceae 0 3 0 Dermatophilus 1862 717 genus 1 2 Dermatophilus congolensis 0 1 species 714 1863 85021 family 6940 1 9 75 0 Intrasporangiaceae 14 Janibacter 0 1616 genus 53457 2 1 857417 1602 species 1 0 Janibacter indicus 0 Serinicoccus 31 1 2 265976 genus 2059 1 2028 species 1758689 Serinicoccus sp. JLT9 0 950 genus 53357 2 1 14 Intrasporangium 0 0 Intrasporangium calvum 53358 species 936 1 267408 genus 2240 1 2 76 0 Arsenicicoccus 0 2663846 no rank 2164 1 0 Arsenicicoccus sp. oral taxon 190 1658671 species 2164 1 Sanguibacteraceae 0 15 3 1 2207 family 145360 2 1 2192 genus 60919 Sanguibacter 0 27 0 Sanguibacter keddieii 1 60920 2165 species 3 1 family 1371 125316 Beutenbergiaceae 0 13 12 0 Beutenbergia 84756 genus 1358 1 2 1 1346 species 84757 Beutenbergia cavernae 0 546 Microbacteriaceae 0 family 47493 85023 48 1 0 Rathayibacter 45 1 3 33886 1451 genus Rathayibacter toxicus 0 1 347 species 145458 0 Rathayibacter tritici 33888 species 1059 1 280 Microbacterium 0 genus 17670 33882 14 1 0 Microbacterium testaceum 2033 species 1172 1 0 Microbacterium aurum 1 36805 1646 species 1 species 705 84292 Microbacterium chocolatum 0 Microbacterium paludicola 0 1 species 1269 300019 1 species 1615 162426 Microbacterium hominis 0 0 8 2609290 10983 no rank 1938334 species 996 1 0 Microbacterium sp. TPU 3598 1 1157 species 1916917 Microbacterium sp. 1.5R 0 species 1020 367477 1 Microbacterium sp. XT11 0 1560 species 2103230 1 Microbacterium sp. str. 'China' 0 Microbacterium sp. No. 7 0 1 1572 species 1714373 1 1795053 1867 species 0 Microbacterium sp. PAMC 28756 0 Microbacterium sp. CGR1 1 1696072 species 1128 0 Microbacterium sp. BH-3-3-3 1 1906742 species 1683 Clavibacter 0 354 6 1 6256 genus 1573 1462 0 Clavibacter michiganensis 28447 species 5902 1 5 0 Clavibacter nebraskensis 1 31963 subspecies 1004 Clavibacter sepedonicus 0 1 subspecies 1341 31964 0 Clavibacter insidiosus 1 33014 966 subspecies Clavibacter capsici 0 1 subspecies 1129 1874630 2 0 Pontimonas 1434032 genus 331 1 2 1159327 329 species 1 0 Pontimonas salivibrio 2 1 genus 1216 1759331 Cnuibacter 0 5 Cnuibacter physcomitrellae 0 1211 species 1619308 1 106 0 Curtobacterium 2034 genus 4296 1 4 species 1399 69373 1 Curtobacterium pusillum 0 0 2 257496 2791 no rank 1 1905847 1506 species 0 Curtobacterium sp. BH-2-1-1 species 1285 1561023 1 Curtobacterium sp. MR_MD2014 0 1 1705353 genus 285 0 species 285 708131 1 Aurantimicrobium minutum 0 Agromyces 0 1 2 1 genus 2518 33877 1 species 2517 453304 Agromyces aureus 0 2 1 1426 genus 447237 Frondihabitans 0 3 0 1 2626248 1423 no rank 1 species 1423 1795630 Frondihabitans sp. PAMC 28766 0 0 1655488 446 no rank 2 clade 446 1655489 2 0 0 529883 446 genus 2 1 529884 254 species 0 Rhodoluna lacicola 1 192 species 535712 Candidatus Rhodoluna planktonica 0 3 1 genus 4989 69578 Cryobacterium 0 67 1 2649013 no rank 2653 0 0 Cryobacterium sp. LW097 1 1978566 species 2653 0 Cryobacterium arcticum 670052 species 2269 1 337004 905 genus 1 2 2 0 Microcella 1 903 species 279828 Microcella alkaliphila 0 110932 genus 3339 1 2 36 0 Leifsonia species 3303 1575 1 Leifsonia xyli 0 2 0 Microterricola 518733 genus 1819 1 2 0 Microterricola viridarii 412690 species 1817 1 1 6 85016 7408 family 0 Cellulomonadaceae 61 Cellulomonas 0 138 5 1 genus 7347 1707 1950 species 1708 1 Cellulomonas fimi 0 1 1943 species 1711 Cellulomonas flavigena 0 2620175 no rank 1471 1 0 Cellulomonas sp. PSBB021 0 species 1471 2003551 1 0 Cellulomonas gilvus 11 species 1845 1 577468 no rank 98 1 0 0 98 genus 2038 1 Tropheryma whipplei 0 species 98 2039 1 1 Jonesiaceae 0 362 family 85022 3 1 361 genus 43673 2 1 2 Jonesia 0 1 43674 359 species 0 Jonesia denitrificans 1 9 85017 10713 family 0 Promicromonosporaceae 110 1 3 157920 genus 3899 0 Cellulosimicrobium 28 0 Cellulosimicrobium cellulans 1710 2156 species 1 2624466 1715 no rank 1 0 0 Cellulosimicrobium sp. TH-20 1 1980001 species 1715 2 1 genus 2947 186188 Xylanimonas 0 28 species 2919 186189 1 Xylanimonas cellulosilytica 0 0 Isoptericola 32 1 3 254250 3757 genus 1 139208 species 1762 0 Isoptericola variabilis 1 372663 species 1963 0 Isoptericola dokdonensis 3 1 family 2495 85019 Brevibacteriaceae 0 29 1696 genus 2466 1 2 78 0 Brevibacterium Brevibacterium linens 0 1 2388 species 1703 Dermacoccaceae 0 66 7 1 family 5217 145357 2 1 1194 genus 57495 Dermacoccus 0 10 Dermacoccus nishinomiyaensis 0 species 1184 1274 1 57499 1818 genus 1 2 49 0 Kytococcus species 1769 1276 1 Kytococcus sedentarius 0 0 Luteipulveratus 43 1 2 745364 genus 2139 2096 species 571913 1 Luteipulveratus mongoliensis 0 0 Dermabacteraceae 125 1 10 85020 family 13932 36739 genus 638 1 0 Dermabacter vaginalis 0 1 species 638 1630135 631 genus 472568 2 1 6 Devriesea 0 1 472569 625 species 0 Devriesea agamarum 1 6 43668 12538 genus 0 Brachybacterium 227 1 2017485 2037 species 0 Brachybacterium sp. VR2415 0 1 2124 no rank 2623841 0 Brachybacterium sp. P6-10-X1 1903186 2124 species 1 0 Brachybacterium faecium 43669 3280 species 1 0 Brachybacterium sp. VM2412 2017484 species 2621 1 1 2249 species 1331682 Brachybacterium ginsengisoli 0 1268 92554 family 1 40 2277 0 Micrococcaceae 1645 genus 454 1 2 1 0 Renibacterium 0 Renibacterium salmoninarum 1 1646 species 453 15 1 30479 genus 1663 Arthrobacter 0 746 37928 2812 species 1 0 Arthrobacter crystallopoietes 0 Arthrobacter alpinus 656366 species 3198 1 0 12 23723 no rank 235627 Arthrobacter sp. U41 0 1 1921 species 1849032 1 2079227 1856 species 0 Arthrobacter sp. PGP41 1690248 3093 species 1 0 Arthrobacter sp. LS16 Arthrobacter sp. QXT-31 0 1 species 1976 1357915 1771959 species 1285 1 0 Arthrobacter sp. ATCC 21022 1704044 species 2029 1 0 Arthrobacter sp. ERGS1:01 Arthrobacter sp. YN 0 1 1991 species 2020486 Arthrobacter sp. PAMC 25486 0 1 1987 species 1494608 species 1090 1118963 1 Arthrobacter sp. Rue61a 0 1 species 2262 290399 Arthrobacter sp. FB24 0 Arthrobacter sp. YC-RL1 0 species 2902 1652545 1 Arthrobacter sp. ZXY-2 0 1331 species 1806905 1 3 1 genus 29946 32207 Rothia 0 12 2047 species 2675 1 0 Rothia dentocariosa 0 Rothia mucilaginosa 1 43675 27259 species 1 2 1742992 genus 1363 0 Paenarthrobacter 1 1 43663 1362 species 0 Paenarthrobacter aurescens 1 2 1868332 7728 genus 0 Neomicrococcus 34 556325 species 7694 1 0 Neomicrococcus aestuarii 0 2078575 genus 1127 1 0 Arthrobacter sp. IHBB 11108 1618207 1127 species 1 Pseudarthrobacter 0 54 4 1 genus 6329 1742993 1866 species 361575 1 Pseudarthrobacter phenanthrenivorans 0 1 2045 species 121292 Pseudarthrobacter sulfonivorans 0 0 Pseudarthrobacter chlorophenolicus 1 85085 species 2364 0 Micrococcus 48 1 2 1269 2045 genus 1270 species 1997 1 0 Micrococcus luteus 1742989 2899 genus 1 2 9 0 Glutamicibacter 0 Glutamicibacter arilaitensis 1 256701 2890 species 11 0 Sinomonas 596707 genus 2220 1 2 1 2209 species 37927 Sinomonas atrocyanea 0 0 Kocuria 133 1 4 57493 genus 5687 1 2036 species 446860 Kocuria flava 0 1 71999 species 1436 0 Kocuria palustris 0 Kocuria rhizophila 72000 species 2082 1 0 Glycomycetales 6 1 4 85014 2342 order 33 0 Glycomycetaceae 85034 2336 family 1 3 283810 genus 2303 1 2 45 0 Stackebrandtia 0 Stackebrandtia nassauensis 283811 species 2258 1 0 1 52018 440 no rank Actinobacteria bacterium IMCC26256 0 1 440 species 1650658 1 6 84995 class 3178 0 Rubrobacteria 64 3114 order 84996 5 1 125 Rubrobacterales 0 family 2989 84997 4 1 21 Rubrobacteraceae 0 42255 2968 genus 1 3 102 0 Rubrobacter 0 Rubrobacter radiotolerans 42256 909 species 1 Rubrobacter xylanophilus 0 1 1957 species 49319 725 1 phylum 19178763 1239 Firmicutes 0 340 1 84086 1466 no rank 0 1 1466 species 243899 endosymbiont 'TC1' of Trimyema compressum 0 33974 2127 no rank 2 0 Ndongobacter 0 33 2 1 genus 2127 1930845 1 1871025 species 2094 0 Ndongobacter massiliensis 11 1 class 42608 526524 Erysipelotrichia 0 25 order 42583 526525 10 1 82 Erysipelotrichales 0 9 1 42501 family 128827 Erysipelotrichaceae 0 401 0 no rank 15269 544447 1 1 1834207 species 15269 0 Erysipelotrichaceae bacterium I46 0 Erysipelothrix 151 1 3 1647 4675 genus 1514105 1835 species 1 0 Erysipelothrix larvae 1648 species 2689 1 0 Erysipelothrix rhusiopathiae 0 Faecalibaculum 69 1 2 1729679 10899 genus Faecalibaculum rodentium 0 10830 species 1702221 1 191303 11257 genus 1 2 56 0 Turicibacter 2638206 no rank 11201 1 0 Turicibacter sp. H121 0 species 11201 1712675 1 class 17630861 186801 225 1 529 Clostridia 0 Clostridiales 0 26139 166 1 17576995 order 186802 0 Symbiobacteriaceae 34 1 3 543349 family 6351 0 Symbiobacterium 36 1 2 2733 6317 genus 2734 species 6281 1 0 Symbiobacterium thermophilum 990719 family 58085 1 3 41 0 Christensenellaceae 0 Christensenella 1171 1 2 990721 genus 58044 1 56873 species 1805714 Christensenella massiliensis 0 40 0 Heliobacteriaceae 31984 5184 family 1 3 190 Heliobacterium 0 5144 genus 2697 2 1 35701 4954 species 1 0 Heliobacterium modesticaldum 186807 family 46755 1 29 232 0 Peptococcaceae Desulfitobacterium 0 67 5 1 genus 9465 36853 0 Desulfitobacterium hafniense 49338 species 3567 1 0 Desulfitobacterium metallireducens 142877 species 1725 1 0 Desulfitobacterium dehalogenans 1 36854 2389 species 0 Desulfitobacterium dichloroeliminans 233055 1717 species 1 Syntrophobotulus 0 3 2 1 genus 2243 51196 0 Syntrophobotulus glycolicus 1 51197 2240 species 2282742 genus 1487 1 0 0 Desulfotomaculum acetoxidans 58138 1487 species 1 2282740 genus 2704 1 0 0 Desulfotomaculum gibsoniae 102134 2704 species 1 18 Candidatus Desulforudis 0 1988 genus 471826 2 1 0 Candidatus Desulforudis audaxviator 1 471827 species 1970 2 1 4683 genus 51514 Dehalobacterium 0 4 Dehalobacterium formicoaceticum 0 species 4679 51515 1 283 0 Desulfotomaculum 1562 genus 9034 1 5 species 2288 1833852 1 Desulfotomaculum ferrireducens 0 59610 1192 species 1 0 Desulfotomaculum reducens Desulfotomaculum nigrificans 0 species 1817 1565 1 3454 species 1564 1 Desulfotomaculum ruminis 0 0 Dehalobacter 67 1 4 56112 genus 7920 Dehalobacter restrictus 0 1 species 2593 55583 0 2 no rank 5260 2635733 Dehalobacter sp. CF 0 1 2723 species 1131462 Dehalobacter sp. DCA 0 1 species 2537 1147129 2 1 1412 genus 278993 Thermincola 0 6 863643 species 1406 1 0 Thermincola potens genus 5587 79206 4 1 339 Desulfosporosinus 0 1 885581 1749 species 0 Desulfosporosinus acidiphilus 0 Desulfosporosinus meridiei 79209 species 1703 1 1 1796 species 1563 Desulfosporosinus orientis 0 0 2304686 family 87960 12 2305130 no rank 49972 1 0 Ruminiclostridium sp. KB18 0 1 species 49972 1834198 2304693 4799 genus 1 0 84032 species 4799 1 0 [Clostridium] thermosuccinogenes genus 7024 1508657 2 1 1179 Ruminiclostridium 0 5845 species 1521 1 [Clostridium] cellulolyticum 0 1 2304691 genus 4857 0 1 4857 species 1510 [Clostridium] stercorarium 0 10 0 Fastidiosipila 236752 genus 2558 1 2 0 Fastidiosipila sanguinis 1 236753 species 2548 0 11399 genus 2304692 3 3031 species 1677857 1 Herbivorax saccincola 0 Ruminiclostridium thermocellum 0 3473 species 1515 1 288965 species 4895 1 0 [Clostridium] clariflavum 1637257 7351 genus 1 2 4 0 Mageeibacillus Mageeibacillus indolicus 0 7347 species 884684 1 9480765 family 541000 13 1 1055 Ruminococcaceae 0 1263 genus 307112 1 3 248 0 Ruminococcus Ruminococcus bicirculans 0 1 species 284965 1160721 1 1264 species 21899 0 Ruminococcus albus 0 no rank 9764 552397 1 1 9764 species 29343 [Clostridium] cellulosi 0 0 1 27579 no rank 2305133 27579 species 1572656 1 Ruminococcaceae bacterium CPB6 0 0 Herbivorax 1890281 3 genus 1 2 1 115897 genus 946234 Flavonifractor 0 264 Flavonifractor plautii 0 115633 species 292800 1 Ethanoligenens 0 32 2 1 genus 28141 253238 1 253239 28109 species 0 Ethanoligenens harbinense 8991214 genus 216851 2 1 2116 Faecalibacterium 0 Faecalibacterium prausnitzii 0 species 8989098 853 1 216572 41276 family 1 3 36 0 Oscillospiraceae 459786 genus 41240 1 2 91 0 Oscillibacter 1 351091 species 41149 0 Oscillibacter valericigenes 27 1 7040830 family 186803 Lachnospiraceae 0 3282 0 2719313 genus 112493 1 0 [Clostridium] bolteae 1 208479 112493 species 841 genus 519629 1 2 188 0 Roseburia 1 301301 519441 species 0 Roseburia hominis 137475 genus 1506553 4 1 694 Lachnoclostridium 0 0 Lachnoclostridium phytofermentans 1 66219 9203 species 2608895 no rank 51908 1 0 Lachnoclostridium sp. YL32 0 species 51908 1834196 1 Lachnoclostridium phocaeense 0 75670 species 1871021 1 0 1 177089 genus 28050 1 177089 species 39485 [Eubacterium] eligens 0 1 2 698776 6999 genus 0 Cellulosilyticum 4 0 Cellulosilyticum lentocellum 29360 species 6995 1 20 Butyrivibrio 0 genus 22168 830 3 1 0 Butyrivibrio proteoclasticus 43305 11286 species 1 species 10862 185008 1 Butyrivibrio hungatei 0 167623 genus 207244 2 1 379 Anaerostipes 0 species 167244 649756 1 Anaerostipes hadrus 0 Blautia 0 213 3 1 188005 genus 572511 2648079 no rank 46196 1 0 0 Blautia sp. YL58 1 1796616 species 46196 Blautia hansenii 0 141596 species 1322 1 1 250854 genus 2569097 0 [Eubacterium] hallii 0 1 species 250854 39488 5413071 no rank 186928 2 0 1 5378180 species 39491 [Eubacterium] rectale 0 Lachnospiraceae bacterium oral taxon 500 0 34891 species 712991 1 1663717 genus 6950 1 2 3 0 Herbinix 1 6947 species 1679721 Herbinix luporum 0 0 1 27776 genus 2719231 0 [Clostridium] saccharolyticum 1 84030 27776 species 6 0 Anaerotignum 2039240 7416 genus 1 2 0 Anaerotignum propionicum 1 28446 7410 species 0 68298 2171 family 4 2 1 genus 1037 862 Syntrophomonas 0 1 1 863 species 1036 0 Syntrophomonas wolfei 129001 1134 genus 1 2 1 0 Syntrophothermus 1 species 1133 86170 Syntrophothermus lipocalidus 0 31979 270069 family 1 41 1381 0 Clostridiaceae Alkaliphilus 0 15 3 1 6255 genus 114627 Alkaliphilus metalliredigens 0 1 species 4218 208226 0 Alkaliphilus oremlandii 461876 2022 species 1 1 30 1485 genus 251915 0 Clostridium 1344 1 species 3323 84022 Clostridium aceticum 0 Clostridium carboxidivorans 0 1 5046 species 217159 1 4517 species 84023 Clostridium autoethanogenum 0 0 Clostridium beijerinckii 1 1520 8645 species 1 1519 species 3349 0 Clostridium tyrobutyricum 1 1494 4615 species 0 Clostridium cochlearium 1 species 5824 46867 Clostridium chauvoei 0 1 3755 species 1488 Clostridium acetobutylicum 0 0 Clostridium taeniosporum 394958 5222 species 1 1 238834 species 4933 0 Clostridium estertheticum 1 1542 species 4781 0 Clostridium novyi 1 1492 9024 species 0 Clostridium butyricum 1 1501 species 9158 0 Clostridium pasteurianum 0 Clostridium scatologenes 1 1548 species 5631 no rank 43798 2614128 2 0 0 Clostridium sp. BNL1100 1 755731 species 5255 species 38543 1042156 1 Clostridium sp. SY8519 0 0 Clostridium tetani 1513 5995 species 1 species 6123 1216932 1 Clostridium bornimense 0 Clostridium botulinum 0 27908 species 1491 1 1 6125 species 1534 Clostridium kluyveri 0 0 Clostridium formicaceticum 1 1497 species 3868 Clostridium saccharoperbutylacetonicum 0 species 7378 36745 1 4735 species 1509 1 Clostridium sporogenes 0 Clostridium saccharobutylicum 0 1 5855 species 169679 1 29341 species 5444 0 Clostridium argentinense 1 1493 4597 species 0 Clostridium cellulovorans 0 Clostridium baratii 1561 8998 species 1 Clostridium ljungdahlii 0 1 species 4499 1538 1502 37425 species 1 0 Clostridium perfringens 0 Mordavella 1 1981033 genus 320 Geosporobacter 0 22 2 1 genus 4602 390805 Geosporobacter ferrireducens 0 species 4580 1424294 1 1 4 49082 genus 5596 0 Candidatus Arthromitus 90 0 2638829 no rank 5506 3 Candidatus Arthromitus sp. SFB-mouse-NL 0 1 species 1796 1508644 1 1041504 1953 species 0 Candidatus Arthromitus sp. SFB-rat-Yit 1 49118 species 1757 0 Candidatus Arthromitus sp. SFB-mouse 186806 38063 family 1 5 35 0 Eubacteriaceae Eubacterium 0 1983 2 1 35762 genus 1730 1736 33779 species 1 0 Eubacterium limosum 0 Acetobacterium 3 1 2 33951 2266 genus 1 33952 species 2263 0 Acetobacterium woodii 12 1 242861 family 186804 Peptostreptococcaceae 0 860 44259 genus 2697 1 2 14 0 Filifactor 1 143361 species 2683 0 Filifactor alocis 0 Acetoanaerobium 3 1 2 186831 genus 2353 Acetoanaerobium sticklandii 0 1 species 2350 1511 0 Paeniclostridium 1 1 2 1849828 genus 8819 8818 species 1505 1 Paeniclostridium sordellii 0 1481960 3580 genus 1 2 3 0 Peptoclostridium 1 3577 species 1731 Peptoclostridium acidaminophilum 0 1870884 222058 genus 1 2 738 0 Clostridioides 221320 species 1496 1 Clostridioides difficile 0 0 2494 no rank 1411023 1 2081703 2494 species 1 0 Peptostreptococcaceae bacterium oral taxon 929 10 230486 no rank 538999 0 539000 family 3961 1 3 14 0 Clostridiales Family XVII. Incertae Sedis 0 Thermaerobacter 22 1 2 73918 genus 3947 0 Thermaerobacter marianensis 1 73919 species 3925 0 genus 113954 2717089 1 Mordavella sp. Marseille-P3756 0 1 113954 species 2086584 1 4 543314 9797 family 0 Clostridiales Family XIII. Incertae Sedis 17 9 0 Mogibacterium 86331 4261 genus 1 2 114527 4252 species 1 0 Mogibacterium diversum 1 143393 species 5519 0 [Eubacterium] sulci 1349 Intestinimonas 0 102774 genus 1392389 2 1 1 1297617 101425 species 0 Intestinimonas butyriciproducens 39 1 order 41765 68295 Thermoanaerobacterales 0 114 0 Thermoanaerobacteraceae 56 1 20 186814 family 20973 2 0 Caldanaerobacter 249529 genus 1060 1 2 911092 1058 species 1 0 Caldanaerobacter subterraneus 1 2 129957 2102 genus 0 Carboxydothermus 2 2100 species 129958 1 Carboxydothermus hydrogenoformans 0 0 4324 no rank 42857 4 0 Ammonifex 11 1 2 42837 1424 genus 1413 species 42838 1 Ammonifex degensii 0 27 Moorella 0 2900 genus 44260 2 1 1 1525 2873 species 0 Moorella thermoacetica 140458 1186 genus 1 2 5 0 Thermacetogenium Thermacetogenium phaeum 0 1181 species 85874 1 309 0 Thermoanaerobacter 1754 genus 12245 1 9 Thermoanaerobacter mathranii 0 940 species 583357 1 species 1382 2325 1 Thermoanaerobacter kivui 0 0 3177 no rank 2636821 2 Thermoanaerobacter sp. X513 0 1 1583 species 573062 1594 species 399726 1 Thermoanaerobacter sp. X514 0 0 Thermoanaerobacter pseudethanolicus 496866 1807 species 1 0 Thermoanaerobacter wiegelii 1 46354 1641 species 108150 1182 species 1 0 Thermoanaerobacter italicus 1807 species 29323 1 Thermoanaerobacter brockii 0 2 227387 family 525 0 Thermodesulfobium 0 2 2 1 genus 525 227388 0 Thermodesulfobium narugense 184064 523 species 1 543371 family 18517 1 13 40 0 Thermoanaerobacterales Family III. Incertae Sedis 44000 genus 12732 1 9 413 0 Caldicellulosiruptor 1 1894 species 717609 Caldicellulosiruptor obsidiansis 0 Caldicellulosiruptor saccharolyticus 0 1460 species 44001 1 52766 species 1396 1 0 Caldicellulosiruptor lactoaceticus Caldicellulosiruptor hydrothermalis 0 1776 species 413888 1 52765 1429 species 1 0 Caldicellulosiruptor kristjanssonii 1 31899 species 1652 0 Caldicellulosiruptor bescii 0 Caldicellulosiruptor kronotskyensis 413889 species 1378 1 Caldicellulosiruptor owensensis 0 1 1334 species 55205 28895 5745 genus 1 3 34 0 Thermoanaerobacterium 1517 3454 species 1 0 Thermoanaerobacterium thermosaccharolyticum species 2257 29329 1 Thermoanaerobacterium xylanolyticum 0 Thermoanaerobacterales Family IV. Incertae Sedis 0 20 3 1 family 1636 543372 1 0 Mahella 252965 genus 1616 1 2 Mahella australiensis 0 species 1615 252966 1 3 2770089 2352 order 0 0 family 1455 2770092 1 0 499228 genus 1455 1 Tepidanaerobacter acetatoxydans 0 1 species 1455 499229 897 family 2770093 2 0 897 genus 291988 2 1 12 Thermosediminibacter 0 291990 885 species 1 0 Thermosediminibacter oceani 1561 order 485256 4 1 18 Natranaerobiales 0 Natranaerobiaceae 0 13 3 1 family 1543 485255 375928 1530 genus 1 2 149 0 Natranaerobius species 1381 375929 1 Natranaerobius thermophilus 0 12 1 7659 order 53433 Halanaerobiales 0 5 4809 family 972 6 1 7 Halanaerobiaceae 0 2 1 1272 genus 32636 Halothermothrix 0 12 Halothermothrix orenii 0 1 species 1260 31909 3530 genus 2330 3 1 45 Halanaerobium 0 0 Halanaerobium hydrogeniformans 1 656519 1422 species Halanaerobium praevalens 0 species 2063 2331 1 16 Halobacteroidaceae 0 2845 family 53434 5 1 2 Halobacteroides 0 genus 1332 42417 2 1 Halobacteroides halobius 0 1330 species 42422 1 1 2 28186 genus 1497 0 Acetohalobium 5 Acetohalobium arabaticum 0 species 1492 28187 1 42944 class 1737404 19 1 4 Tissierellia 0 393 Tissierellales 0 41505 order 1737405 16 1 0 Gottschalkiaceae 6 1 3 2042895 3656 family 2 1 genus 3650 1505664 Gottschalkia 0 7 species 3643 1556 1 Gottschalkia acidurici 0 Peptoniphilaceae 0 9327 12 1 37456 family 1570339 32 0 Parvimonas 543311 genus 3659 1 2 1 33033 3627 species 0 Parvimonas micra Peptoniphilus 0 5 2 1 1815 genus 162289 1810 no rank 2637196 1 0 species 1810 1912856 1 Peptoniphilus sp. ING2-D1G 0 1 3 165779 4517 genus 0 Anaerococcus 12 Anaerococcus mediterraneensis 0 species 2477 1870984 1 2028 species 33034 1 Anaerococcus prevotii 0 1161127 genus 14840 1 2 5 0 Murdochiella Murdochiella vaginalis 0 species 14835 1852373 1 2 1 3298 genus 150022 Finegoldia 0 37 1 1260 3261 species 0 Finegoldia magna 0 2 no rank 1435 1737407 1582879 1435 genus 1 2 18 0 Ezakiella Ezakiella massiliensis 0 species 1417 1852374 1 1 31 909932 class 154291 0 Negativicutes 150 1 11 1843489 order 67059 0 Veillonellales 863 Veillonellaceae 0 742 10 1 family 66196 31977 1 3 29465 39015 genus 0 Veillonella 27 29466 species 34663 1 0 Veillonella parvula Veillonella rodentium 0 1 species 4325 248315 1 2 906 13687 genus 0 Megasphaera 434 907 13253 species 1 0 Megasphaera elsdenii 2 1 genus 9466 39948 Dialister 0 146 1 39950 9320 species 0 Dialister pneumosintes 2 1 3286 genus 909928 Negativicoccus 0 9 0 Negativicoccus massiliensis 1 1702287 species 3277 128 Selenomonadales 0 order 39805 909929 14 1 4 1 family 4422 1843490 Sporomusaceae 0 5 104 Pelosinus 0 genus 4417 365348 3 1 Pelosinus fermentans 0 1 2351 species 365349 1 no rank 1962 2629460 0 484770 species 1962 1 0 Pelosinus sp. UFO1 1843491 family 35255 1 9 307 0 Selenomonadaceae 2 1 3892 genus 158846 Megamonas 0 7 158847 3885 species 1 0 Megamonas hypermegale 970 31056 genus 1 6 251 0 Selenomonas 2637378 no rank 13819 3 0 Selenomonas sp. oral taxon 920 0 1 species 4415 1884263 0 Selenomonas sp. oral taxon 478 712538 4503 species 1 713030 4901 species 1 0 Selenomonas sp. oral taxon 136 0 Selenomonas sputigena 69823 species 6984 1 0 Selenomonas ruminantium 971 10002 species 1 1 5 1843488 order 47277 0 Acidaminococcales 87 47190 family 909930 4 1 127 Acidaminococcaceae 0 3 1 genus 47063 904 Acidaminococcus 0 346 Acidaminococcus intestini 0 1 species 37539 187327 1 species 9178 905 Acidaminococcus fermentans 0 Limnochordia 0 14 5 1 2553 class 1676648 62 0 Limnochordales 1676649 2539 order 1 4 22 0 Limnochordaceae 1676650 family 2477 1 3 genus 2455 1676651 2 1 21 Limnochorda 0 1 1555112 2434 species 0 Limnochorda pilosa 0 Bacilli 522 1 430 91061 1301573 class 0 Lactobacillales 6456 1 166 186826 order 907089 0 263855 no rank 951 1 Lactobacillales bacterium 0 1 951 species 1993866 Enterococcaceae 0 67 20 1 53589 family 81852 12 1 genus 47084 1350 Enterococcus 0 3707 1 1354 species 1959 0 Enterococcus hirae 0 Enterococcus casseliflavus 37734 621 species 1 Enterococcus mundtii 0 1 1573 species 53346 1 10931 species 1351 Enterococcus faecalis 0 1 species 2180 53345 Enterococcus durans 0 Enterococcus wangshanyuanii 0 1 1616 species 2005703 0 Enterococcus thailandicus 417368 species 936 1 0 3 no rank 3106 2608891 910 species 2057791 1 Enterococcus sp. CR-Ec1 0 Enterococcus sp. FDAARGOS_163 0 910 species 2060306 1 1 2060307 species 1286 0 Enterococcus sp. FDAARGOS_375 1 1352 20455 species 0 Enterococcus faecium 35 Vagococcus 0 genus 2728 2737 3 1 Vagococcus penaei 0 1158 species 633807 1 519472 species 1535 1 0 Vagococcus teuberi 3 0 Tetragenococcus 51668 genus 2245 1 2 0 Tetragenococcus halophilus 51669 2242 species 1 1 2 33969 genus 1465 0 Melissococcus 1 1 33970 species 1464 0 Melissococcus plutonius Aerococcaceae 0 23 8 1 family 6547 186827 7 1 genus 6524 1375 Aerococcus 0 320 0 Aerococcus urinaeequi 51665 species 1298 1 128944 821 species 1 0 Aerococcus urinaehominis 0 Aerococcus viridans 1377 species 831 1 119206 species 905 1 0 Aerococcus sanguinicola 1 87541 1151 species 0 Aerococcus christensenii 1 1376 1198 species 0 Aerococcus urinae 0 Streptococcaceae 2390 1 49 1300 417765 family 1357 12432 genus 1 5 33 0 Lactococcus Lactococcus garvieae 0 species 1456 1363 1 0 Lactococcus piscium 1364 species 1958 1 0 Lactococcus raffinolactis 1366 species 2773 1 species 6212 1358 1 Lactococcus lactis 0 1 43 1301 genus 402943 0 Streptococcus 6269 5881 species 1302 1 Streptococcus gordonii 0 1 2242 species 1326 Streptococcus acidominimus 0 0 Streptococcus iniae 1 1346 species 3275 18553 species 1308 1 Streptococcus thermophilus 0 1309 1427 species 1 0 Streptococcus mutans 0 Streptococcus merionis 400065 698 species 1 1 257758 1868 species 0 Streptococcus pseudopneumoniae 82348 595 species 1 0 Streptococcus pluranimalium Streptococcus equinus 0 1 species 6548 1335 0 Streptococcus marmotae 1825069 880 species 1 Streptococcus halotolerans 0 1 species 848 1814128 species 2672 45634 1 Streptococcus cristatus 0 315405 species 3116 1 0 Streptococcus gallolyticus 1 7665 species 28037 Streptococcus mitis 0 1305 species 3972 1 0 Streptococcus sanguinis 0 7 no rank 90147 2608887 1156433 24990 species 1 0 Streptococcus sp. I-P16 1 1902136 species 2514 0 Streptococcus sp. NPS 308 1759399 16418 species 1 0 Streptococcus sp. A12 species 11056 1839799 1 Streptococcus sp. FDAARGOS_192 0 1 9661 species 712633 Streptococcus sp. oral taxon 431 0 0 Streptococcus sp. I-G2 1156431 species 24529 1 Streptococcus sp. 'group B' 0 1 979 species 1319 1 50942 species 1307 Streptococcus suis 0 6832 species 150055 1 Streptococcus lutetiensis 0 0 Streptococcus oralis 1 1303 species 8813 0 Streptococcus himalayensis 1 1888195 702 species 0 671232 70419 species group 3 1 76860 33821 species 0 Streptococcus constellatus 1328 33255 species 1 0 Streptococcus anginosus 0 Streptococcus intermedius 1 1338 species 3343 0 Streptococcus parasanguinis 1318 11007 species 1 2 119603 species group 4149 0 1 1336 species 2987 0 Streptococcus equi 1 1334 1162 species 0 Streptococcus dysgalactiae Streptococcus pantholopis 0 1 1196 species 1811193 0 Streptococcus pneumoniae 1313 5770 species 1 0 Streptococcus pyogenes 1 1314 species 3444 1 102684 16601 species 0 Streptococcus infantarius 1 44314 species 1304 Streptococcus salivarius 0 0 Streptococcus uberis 1349 932 species 1 197614 3939 species 1 0 Streptococcus pasteurianus 1239 species 1348 1 Streptococcus parauberis 0 1311 species 14502 1 0 Streptococcus agalactiae 0 Streptococcus macedonicus 1 59310 species 1486 15 Carnobacteriaceae 0 family 9679 186828 11 1 1470540 2030 genus 1 3 7 0 Jeotgalibaca Jeotgalibaca dankookensis 0 1 792 species 708126 1231 no rank 2621505 1 0 species 1231 1903686 1 Jeotgalibaca sp. PTS2502 0 1680 genus 191769 2 1 3 Marinilactibacillus 0 0 2632303 no rank 1677 1 1 species 1677 1911586 Marinilactibacillus sp. 15R 0 1 5 2747 genus 5954 0 Carnobacterium 43 0 Carnobacterium inhibens 147709 species 1338 1 2 no rank 2754 257487 0 1 208596 1663 species 0 Carnobacterium sp. 17-4 1 1564681 species 1091 0 Carnobacterium sp. CP1 2751 species 1819 1 0 Carnobacterium maltaromaticum 58 1 402216 family 33958 Lactobacillaceae 0 460 2767893 2477 genus 3 0 987 species 1138822 1 Lactobacillus curieae 0 0 Lactobacillus parabuchneri 152331 558 species 1 932 species 1581 1 Lactobacillus buchneri 0 2767879 5930 genus 6 0 1 1074467 736 species 0 Lactobacillus heilongjiangensis species 777 1602 1 Lactobacillus alimentarius 0 1612 species 1077 1 0 Lactobacillus farciminis Lactobacillus ginsenosidimutans 0 1258 species 1007676 1 1847728 1085 species 1 0 Lactobacillus allii 1 392416 species 997 0 Lactobacillus crustorum 0 genus 479 2767890 1 Lactobacillus hokkaidonensis 0 479 species 1193095 1 Lactobacillus 0 2499 16 1 genus 25959 1578 1287 species 109790 1 Lactobacillus jensenii 0 1604 species 4325 1 0 Lactobacillus amylovorus 1 697 species 267818 Lactobacillus kefiranofaciens 0 0 Lactobacillus johnsonii 1 33959 3126 species Lactobacillus gasseri 0 2183 species 1596 1 Lactobacillus delbrueckii 0 species 3928 1584 1 species 727 1600 1 Lactobacillus acetotolerans 0 species 1987 52242 1 Lactobacillus gallinarum 0 1 1587 species 1721 0 Lactobacillus helveticus 0 Lactobacillus amylolyticus 83683 567 species 1 Lactobacillus acidophilus 0 1013 species 1579 1 0 2620435 1899 no rank 4 Lactobacillus sp. CBA3605 0 375 species 2099788 1 Lactobacillus sp. D1501 0 species 385 2108362 1 0 Lactobacillus sp. CBA3606 2099789 species 456 1 1 1545702 species 683 0 Lactobacillus sp. wkB8 0 3 2767886 genus 2417 Lactobacillus koreensis 0 1 708 species 637971 Lactobacillus zymae 0 710 species 267363 1 1 999 species 1580 Lactobacillus brevis 0 0 2 genus 1864 2767889 1 1610 1099 species 0 Lactobacillus coryniformis 1 375175 species 765 0 Lactobacillus backii 0 genus 1021 2767877 1 Lactobacillus kunkeei 0 1 species 1021 148814 2 2400 genus 2767885 0 0 Lactobacillus curvatus 1 28038 929 species 1599 species 1471 1 0 Lactobacillus sakei 2767842 genus 2269 3 0 0 Lactobacillus pentosus 1589 species 792 1 60520 247 species 1 0 Lactobacillus paraplantarum Lactobacillus plantarum 0 species 1230 1590 1 0 4901 genus 2767876 1 1603 species 4901 1 0 Lactobacillus amylophilus 0 2767892 894 genus 1 0 Lactobacillus paracollinoides 1 240427 894 species 3 5751 genus 2759736 0 1 1582 species 2389 0 Lactobacillus casei 47715 species 1459 1 0 Lactobacillus rhamnosus species 1903 1597 1 Lactobacillus paracasei 0 5339 genus 1253 6 1 24 Pediococcus 0 1 1670797 1165 species group 0 0 Pediococcus acidilactici 1 1254 species 1165 Pediococcus pentosaceus 0 1690 species 1255 1 0 Pediococcus inopinatus 114090 species 613 1 51663 852 species 1 0 Pediococcus damnosus 187452 species 995 1 0 Pediococcus claussenii 3 2742598 genus 4848 0 97478 1421 species 1 0 Lactobacillus mucosae Lactobacillus reuteri 0 1 1936 species 1598 1 species 1491 1613 Lactobacillus fermentum 0 0 4 2767887 333887 genus 0 Lactobacillus ruminis 1 1623 325548 species 0 Lactobacillus salivarius 1 1624 4372 species Lactobacillus agilis 0 1 species 3111 1601 0 Lactobacillus acidipiscis 1 89059 species 856 0 2767881 1320 genus 2 0 Lactobacillus sanfranciscensis 1 1625 647 species 1 673 species 53444 Lactobacillus lindneri 0 Leuconostocaceae 0 11 18 1 family 9886 81850 6 1 genus 3062 46255 Weissella 0 17 1 137591 825 species 0 Weissella cibaria 0 Weissella paramesenteroides 1249 species 698 1 Weissella koreensis 0 species 534 165096 1 1 759620 450 species 0 Weissella ceti 0 Weissella jogaejeotgali 1631871 species 538 1 2 Oenococcus 0 genus 1234 46254 2 1 0 Oenococcus oeni 1247 1232 species 1 0 Leuconostoc 96 1 9 1243 genus 5579 1 species 520 1252 Leuconostoc carnosum 0 Leuconostoc lactis 0 1 447 species 1246 0 507 no rank 2685106 1 0 Leuconostoc sp. C2 979982 species 507 1 Leuconostoc garlicum 0 1 320 species 255248 1 species 600 136609 Leuconostoc kimchii 0 1568 species 1245 1 Leuconostoc mesenteroides 0 520 species 33964 1 Leuconostoc citreum 0 Leuconostoc gelidum 0 1 species 1001 1244 999 Bacillales 0 393962 order 1385 263 1 Alicyclobacillaceae 0 54 9 1 11151 family 186823 0 Kyrpidia 88 1 3 1129704 2369 genus Kyrpidia tusciae 0 1 1118 species 33943 species 1163 2055160 1 Kyrpidia sp. EA-1 0 genus 4925 432330 3 1 27 Tumebacillus 0 Tumebacillus avium 0 1 3260 species 1903704 Tumebacillus algifaecis 0 species 1638 1214604 1 2 1 3803 genus 29330 Alicyclobacillus 0 110 Alicyclobacillus acidocaldarius 0 1 3693 species 405212 13 Thermoactinomycetaceae 0 family 2643 186824 4 1 2 1 genus 2600 1677050 Novibacillus 0 48 Novibacillus thermophilus 0 1 2552 species 1471761 1 30 genus 292635 Laceyella 0 0 9 539002 5728 no rank 2 2153 no rank 539738 0 6 0 Gemella 1378 genus 2153 1 2 2147 no rank 2624949 1 0 2147 species 1785995 1 Gemella sp. oral taxon 928 0 0 7 no rank 3575 539742 genus 3575 33986 7 1 133 Exiguobacterium 0 4 2201 no rank 2644629 0 1 509 species 1849031 Exiguobacterium sp. U13-1 0 Exiguobacterium sp. ZWU0009 0 423 species 1224749 1 1 360911 747 species 0 Exiguobacterium sp. AT1b 522 species 1399115 1 Exiguobacterium sp. MH3 0 1 332410 species 748 0 Exiguobacterium sibiricum species 493 132920 1 Exiguobacterium antarcticum 0 42 1 family 55832 90964 Staphylococcaceae 0 2867 1233 genus 2005363 2 1 16 Auricoccucs 0 0 Auricoccus indicus 1 1849491 1217 species Macrococcus 0 21 4 1 3956 genus 69965 0 Macrococcus canis 1855823 species 1162 1 Macrococcus caseolyticus 0 1 1518 species 69966 1 no rank 1255 2619255 0 1 species 1255 1898474 Macrococcus sp. IME1552 0 46534 genus 1279 33 1 1146 Staphylococcus 0 species 5002 1280 1 Staphylococcus aureus 0 0 Staphylococcus xylosus 1288 species 2757 1 Staphylococcus hyicus 0 954 species 1284 1 1 29385 species 1168 0 Staphylococcus saprophyticus Staphylococcus schleiferi 0 1 species 1122 1295 246432 1666 species 1 0 Staphylococcus equorum 0 Staphylococcus lutrae 1 155085 633 species 1 1352 species 1283 Staphylococcus haemolyticus 0 1 species 1162 214473 Staphylococcus nepalensis 0 Staphylococcus simulans 0 1 species 1252 1286 1 61015 1001 species 0 Staphylococcus succinus 0 Staphylococcus capitis 29388 species 1495 1 Staphylococcus kloosii 0 1 1165 species 29384 29382 species 1399 1 0 Staphylococcus cohnii Staphylococcus warneri 0 species 1248 1292 1 species 501 170573 1 Staphylococcus pettenkoferi 0 1 70255 species 1213 0 Staphylococcus condimenti 1 1296 species 1724 0 Staphylococcus sciuri 1 1245 species 28035 Staphylococcus lugdunensis 0 species 1430 1290 1 Staphylococcus hominis 0 Staphylococcus pseudintermedius 0 1 species 1588 283734 3059 species 45972 1 Staphylococcus pasteuri 0 0 Staphylococcus simiae 1 308354 1748 species Staphylococcus argenteus 0 1 1110 species 985002 Staphylococcus felis 0 1 930 species 46127 0 Staphylococcus muscae 1294 species 691 1 Staphylococcus stepanovicii 0 species 1086 643214 1 1 1048 no rank 91994 0 1 1715860 1048 species 0 Staphylococcus sp. AntiMn-1 1 985762 790 species 0 Staphylococcus agnetis species 892 1281 1 Staphylococcus carnosus 0 2037 species 1282 1 Staphylococcus epidermidis 0 1 920 species 70258 Staphylococcus piscifermentans 0 13 Salinicoccus 0 1242 genus 45669 2 1 1 1229 species 407035 Salinicoccus halodurans 0 0 Listeriaceae 32 1 9 186820 10030 family Brochothrix 0 1 2 1 924 genus 2755 0 Brochothrix thermosphacta 2756 species 923 1 1 6 1637 genus 9074 0 Listeria 135 Listeria seeligeri 0 1361 species 1640 1 1 1638 2039 species 0 Listeria ivanovii 0 Listeria innocua 1 1642 1101 species 1 1643 1224 species 0 Listeria welshimeri 1 1639 species 3214 0 Listeria monocytogenes 186818 23286 family 1 26 68 0 Planococcaceae 0 1 648802 1135 genus 1 241244 species 1135 0 Rummeliibacillus stabekisii 3 Jeotgalibacillus 0 1478 genus 157226 2 1 species 1475 1508404 1 Jeotgalibacillus malaysiensis 0 genus 5866 1569 5 1 76 Sporosarcina 0 1 species 879 1476 Sporosarcina psychrophila 0 0 Sporosarcina ureae 1 1571 species 2699 0 2647733 2212 no rank 2 0 Sporosarcina sp. P37 1930546 1087 species 1 species 1125 1930764 1 Sporosarcina sp. P33 0 12 1 genus 10420 1372 Planococcus 0 264 Planococcus antarcticus 0 893 species 161360 1 Planococcus donghaensis 0 1 species 941 414778 1 1302659 529 species 0 Planococcus sp. L10.15 192421 species 2200 1 0 Planococcus maritimus Planococcus rifietoensis 0 975 species 200991 1 Planococcus plakortidis 0 1 545 species 1038856 0 Planococcus halocryophilus 1215089 species 831 1 Planococcus faecalis 0 1 species 717 1598147 0 Planococcus kocurii 1 1374 698 species 0 2 1827 no rank 2662419 0 Planococcus sp. PAMC 21323 1 1526927 822 species 0 Planococcus sp. MB-3u-03 2058136 species 1005 1 Solibacillus 0 31 3 1 3169 genus 648800 1 species 1856 76853 Solibacillus silvestris 0 0 1 2637870 no rank 1282 species 1282 2048654 1 Solibacillus sp. R5-41 0 1 Kurthia 0 genus 1150 1649 2 1 0 no rank 1149 2644826 1 Kurthia sp. 11kri321 0 species 1149 1750719 1 1 46 186822 117382 family 0 Paenibacillaceae 462 41 Brevibacillus 0 5306 genus 55080 4 1 0 Brevibacillus laterosporus 1465 species 2339 1 0 Brevibacillus brevis 1 1393 species 1851 species 1075 54913 1 Brevibacillus formosus 0 3 85151 no rank 3047 0 12 0 Aneurinibacillus 55079 genus 3047 1 3 1 1460 no rank 2642329 0 1450761 species 1460 1 0 Aneurinibacillus sp. XH2 1500254 species 1575 1 0 Aneurinibacillus soli 76632 genus 4811 1 2 18 0 Thermobacillus 377615 species 4793 1 0 Thermobacillus composti 44249 103756 genus 1 36 982 0 Paenibacillus 1 2044880 3857 species group 0 Paenibacillus riograndensis 0 1 3857 species 483937 0 Paenibacillus kribbensis 1 172713 1903 species species 3821 189425 1 Paenibacillus graminis 0 species 1215 1763538 1 Paenibacillus crassostreae 0 0 Paenibacillus polymyxa 1 1406 5352 species 0 Paenibacillus ihbetae 1 1870820 species 2700 0 Paenibacillus durus 1 44251 species 4860 0 13 185978 no rank 35404 0 Paenibacillus sp. JDR-2 1 324057 2334 species 1 1536770 1421 species 0 Paenibacillus sp. FSL R5-0345 Paenibacillus sp. FSL H7-0737 0 1 1190 species 1536775 species 3667 1536771 1 Paenibacillus sp. FSL R5-0912 0 0 Paenibacillus sp. FSL P4-0081 1536769 species 4246 1 Paenibacillus sp. FSL R7-0331 0 species 3842 1536773 1 1 1566358 1091 species 0 Paenibacillus sp. IHBB 10380 1 2069255 1381 species 0 Paenibacillus sp. lzh-N1 2913 species 481743 1 Paenibacillus sp. Y412MC10 0 1 2536 species 1870819 Paenibacillus sp. BIHB4019 0 Paenibacillus sp. FSL H7-0357 0 1 3626 species 1536774 2720 species 1695218 1 Paenibacillus sp. 32O-W 0 4437 species 1536772 1 Paenibacillus sp. FSL R7-0273 0 0 Paenibacillus yonginensis 1462996 species 3521 1 3385 species 1126833 1 Paenibacillus beijingensis 0 Paenibacillus borealis 0 1 3960 species 160799 Paenibacillus donghaensis 0 1 4318 species 414771 species 4953 169760 1 Paenibacillus stellifer 0 Paenibacillus peoriae 0 species 1282 59893 1 species 1705 159743 1 Paenibacillus terrae 0 1 189426 species 1527 0 Paenibacillus odorifer 2790 species 1616788 1 Paenibacillus bovis 0 0 Paenibacillus mucilaginosus 61624 species 6222 1 0 Paenibacillus swuensis 1178515 1496 species 1 species 1759 528191 1 Paenibacillus xylanexedens 0 0 Paenibacillus sabinae 1 365617 species 2687 Paenibacillus naphthalenovorans 0 2141 species 162209 1 0 Paenibacillus larvae 1 1464 species 1916 115 1 165450 family 186817 Bacillaceae 0 640 2 genus 3207 2675229 0 species 984 264697 1 Bacillus muralis 0 Bacillus simplex 0 2223 species 1478 1 29331 1815 genus 1 0 0 Amphibacillus xylanus 1449 1815 species 1 genus 2031 182709 1 0 1 species 2031 182710 Oceanobacillus iheyensis 0 1 1522 genus 175304 0 species 1522 1472767 1 Lentibacillus amyloliquefaciens 0 0 Anoxybacillus 28 1 6 150247 6117 genus 1 species 974 198467 Anoxybacillus gonensis 0 1 913 species 294699 Anoxybacillus amylolyticus 0 1 1810 species 33934 Anoxybacillus flavithermus 0 2 2392 no rank 2639704 0 0 Anoxybacillus sp. B7M1 1 1490057 1320 species 1490052 species 1072 1 0 Anoxybacillus sp. B2M1 80 Lysinibacillus 0 7178 genus 400634 5 1 0 Lysinibacillus sphaericus 1 1421 species 3309 0 1 2636778 no rank 1344 1 2072025 1344 species 0 Lysinibacillus sp. YS11 species 1130 1145276 1 Lysinibacillus varians 0 Lysinibacillus fusiformis 0 species 1315 28031 1 2 2949 genus 2675230 0 species 1455 859143 1 Bacillus kochii 0 1 1494 species 665099 Bacillus oceanisediminis 0 6734 genus 84406 7 1 35 Virgibacillus 0 0 Virgibacillus phasianinus 2017483 species 1131 1 Virgibacillus halodenitrificans 0 species 1212 1482 1 2091 no rank 2620237 2 0 Virgibacillus sp. 6R 0 species 1102 1911587 1 0 Virgibacillus sp. SK37 1 403957 989 species 0 Virgibacillus pantothenticus 1 1473 1142 species Virgibacillus necropolis 0 1123 species 163877 1 2 1 1177 genus 1906945 Parageobacillus 0 1 Parageobacillus thermoglucosidasius 0 1176 species 1426 1 5036 Bacillus 0 genus 102103 1386 58 1 Bacillus weihaiensis 0 1 1583 species 1547283 Bacillus coagulans 0 3377 species 1398 1 1 86664 species 1296 0 Bacillus flexus 33686 species group 86661 10 0 0 Bacillus toyonensis 1 155322 1201 species 0 3 2750818 3649 no rank Bacillus sp. FDAARGOS_235 0 species 1632 1839798 1 Bacillus sp. ABP14 0 1 species 901 1892404 2053832 species 1116 1 0 Bacillus sp. HBCD-sjtu 1396 10435 species 1 0 Bacillus cereus species 1108 1392 1 Bacillus anthracis 0 1 4429 species 1405 Bacillus mycoides 0 Bacillus bombysepticus 0 1 species 1349 658666 species 9637 1428 1 Bacillus thuringiensis 0 1 580165 species 1878 0 Bacillus cytotoxicus 1 79881 180 species 0 Bacillus gibsonii species 1034 79883 1 Bacillus horikoshii 0 0 185979 13371 no rank 19 0 Bacillus sp. YP1 1574141 382 species 1 546 species 1446792 1 Bacillus sp. Pc3 0 1 species 156 2049935 Bacillus sp. Lzh-5 0 976 species 1774743 1 Bacillus sp. SDLI1 0 1 species 353 1127744 Bacillus sp. JS 0 1 2026248 943 species 0 Bacillus sp. 1s-1 666686 1754 species 1 0 Bacillus sp. 1NLA3E 98228 species 1077 1 0 Bacillus sp. OxB-1 1565991 1034 species 1 0 Bacillus sp. X1(2014) 1 1837130 801 species 0 Bacillus sp. FJAT-14266 Bacillus sp. 275 0 1 species 481 1941347 1856406 species 944 1 0 Bacillus sp. H15-1 1 1570330 species 266 0 Bacillus sp. BH072 Bacillus sp. IHB B 7164 0 1222 species 1827146 1 314 species 1628753 1 Bacillus sp. LM 4-2 0 0 Bacillus sp. MD-5 1 2009331 425 species 270 species 1409 1 Bacillus sp. (in: Bacteria) 0 756828 species 733 1 0 Bacillus sp. WP8 1 563169 species 694 0 Bacillus sp. SJ-10 412384 species 1459 1 0 Bacillus aryabhattai 1 880 species 632773 Bacillus beveridgei 0 0 Bacillus megaterium 1404 species 3204 1 1178537 1009 species 1 0 Bacillus xiamenensis 1408 species 4115 1 0 Bacillus pumilus 33932 species 1537 1 0 Bacillus cohnii Bacillus glycinifermentans 0 1732 species 1664069 1 9 18829 species group 653685 0 1 1500 species 1402 Bacillus licheniformis 0 119858 species 1387 1 0 Bacillus sonorensis 0 Bacillus atrophaeus 1 1452 1656 species 0 Bacillus subtilis 1423 6551 species 1 1 1648923 species 1354 0 Bacillus paralicheniformis 0 1938374 species subgroup 6071 3 0 Bacillus amyloliquefaciens 1 1390 2714 species 492670 species 2422 1 0 Bacillus velezensis 1 659243 935 species 0 Bacillus siamensis 1 72361 species 310 0 Bacillus vallismortis species 1002 1471 1 Bacillus methanolicus 0 0 Bacillus infantis 324767 1679 species 1 1 135735 species 1840 0 Bacillus endophyticus 1413 species 1430 1 0 Bacillus cellulosilyticus 1 1479 species 855 0 Bacillus smithii Bacillus safensis 0 1 1805 species 561879 1164 species group 1792192 1 0 0 Bacillus altitudinis 293387 1164 species 1 Geobacillus 0 1022 15 1 12840 genus 129337 1 1275 species 1422 Geobacillus stearothermophilus 0 Geobacillus subterraneus 0 species 1057 129338 1 species 993 33940 1 Geobacillus thermodenitrificans 0 species 1023 1921421 1 Geobacillus genomosp. 3 0 0 4 1505648 species group 3739 Geobacillus thermocatenulatus 0 1 species 739 33938 Geobacillus thermoleovorans 0 1 1591 species 33941 Geobacillus lituanicus 0 species 939 169283 1 Geobacillus kaustophilus 0 1 species 470 1462 0 6 3731 no rank 2642459 0 Geobacillus sp. Y4.1MC1 581103 1108 species 1 691437 445 species 1 0 Geobacillus sp. C56-T3 544556 366 species 1 0 Geobacillus sp. Y412MC61 species 496 1233873 1 Geobacillus sp. GHH01 0 0 Geobacillus sp. Y412MC52 550542 species 411 1 Geobacillus sp. WCH70 0 1 905 species 471223 351195 972 genus 1 0 1 1230341 972 species 0 Salimicrobium jeotgali Fictibacillus 0 23 3 1 genus 2572 1329200 species 1280 255247 1 Fictibacillus arsenicus 0 0 Fictibacillus phosphorivorans 1 1221500 species 1269 459532 genus 1789 1 2 2 0 Terribacillus 586416 species 1787 1 0 Terribacillus aidingensis 0 5 genus 8707 2675234 1 199441 1597 species 0 Bacillus krulwichiae Bacillus clausii 0 2903 species 79880 1 1 1082 species 79885 Bacillus pseudofirmus 0 1 1198 species 86665 Bacillus halodurans 0 0 Bacillus lehensis 300825 1927 species 1 genus 1935 45667 2 0 0 Halobacillus mangrovi 1 402384 species 1008 1 1570 927 species 0 Halobacillus halophilus 0 1162 genus 1055323 1 0 Aeribacillus pallidus 33936 1162 species 1 0 Sporolactobacillaceae 6 1 2 186821 1461 family 1 1455 no rank 663587 0 0 [Bacillus] selenitireducens 1 85683 1455 species 0 1297 56297 phylum 36 188787 class 56297 1 36 298 0 Deinococci 15 1 35877 order 118964 Deinococcales 0 394 14 1 family 35483 183710 Deinococcaceae 0 125 Deinococcus 0 415 13 1 35358 genus 1298 Deinococcus geothermalis 0 1 2633 species 68909 1 2623546 no rank 2583 0 Deinococcus sp. NW-56 0 1 species 2583 2080419 Deinococcus puniceus 0 1 2408 species 1182568 species 2445 309887 1 Deinococcus maricopensis 0 Deinococcus radiodurans 0 species 2773 1299 1 species 4254 1182571 1 Deinococcus swuensis 0 Deinococcus peraridilitoris 0 1752 species 432329 1 0 Deinococcus soli Cha et al. 2016 1 1309411 species 3121 Deinococcus actinosclerus 0 1 3733 species 1768108 0 Deinococcus deserti 1 310783 species 1793 1 species 3750 55148 Deinococcus proteolyticus 0 1 species 3698 502394 Deinococcus gobiensis 0 0 3 order 2006 2762275 13 0 Trueperaceae 332247 family 2006 1 3 12 0 Truepera 332248 genus 1993 1 2 332249 1981 species 1 0 Truepera radiovictrix 280 Thermales 0 18116 order 68933 17 1 0 Thermaceae 105 1 16 188786 17836 family genus 2817 208447 2 1 34 Oceanithermus 0 Oceanithermus profundus 0 species 2783 187137 1 3 Marinithermus 0 1641 genus 186191 2 1 Marinithermus hydrothermalis 0 1 1638 species 186192 0 Thermus 215 1 8 270 genus 9990 2619321 no rank 1095 1 0 Thermus sp. CCB_US3_UF1 0 1095 species 1111069 1 0 Thermus aquaticus 1 271 species 1534 56957 species 1319 1 0 Thermus oshimai 0 Thermus scotoductus 37636 species 1023 1 species 1248 456163 1 Thermus parvatiensis 0 Thermus brockianus 0 1 849 species 56956 Thermus thermophilus 0 species 2707 274 1 0 Meiothermus 24 1 3 65551 genus 3283 species 1266 52022 1 Meiothermus silvanus 0 277 1993 species 1 0 Meiothermus ruber 0 1798711 79015 clade 150 1117 79015 phylum 1 150 24 0 Cyanobacteria 0 1983111 no rank 424 1 cyanobacterium endosymbiont of Epithemia turgida 0 424 species 718217 1 1301283 16085 subclass 42 0 24 0 Oscillatoriales 1150 7147 order 1 20 0 Oscillatoriaceae 6 1 6 1892254 family 1877 1158 genus 1406 1 3 15 0 Oscillatoria 0 Oscillatoria nigro-viridis 482564 984 species 1 118323 species 407 1 0 Oscillatoria acuminata 1155738 genus 465 1 2 2 0 Moorea 1155739 463 species 1 0 Moorea producens 10 Coleofasciculaceae 0 family 1983 1892251 3 1 Geitlerinema 0 4 2 1 genus 1973 63132 1969 no rank 2648775 1 0 1 1969 species 1173025 Geitlerinema sp. PCC 7407 0 3 1 793 family 1892249 Cyanothecaceae 0 9 43988 genus 784 1 2 34 0 Cyanothece no rank 750 2649277 1 0 395961 750 species 1 0 Cyanothece sp. PCC 7425 family 1582 1892252 4 1 1 Microcoleaceae 0 1205 1142 genus 1 0 Trichodesmium erythraeum 0 species 1142 1206 1 44471 genus 439 1 2 1 0 Microcoleus 438 no rank 2642155 1 0 Microcoleus sp. PCC 7113 0 species 438 1173027 1 1892255 888 family 1 3 12 0 Gomontiellaceae Crinalium 0 4 2 1 genus 876 241421 Crinalium epipsammum 0 species 872 241425 1 1 22 1118 8938 order 0 Chroococcales 6 3 0 Aphanothecaceae 1890450 family 3484 1 9 1453359 386 genus 1 2 2 0 Candidatus Atelocyanobacterium Candidatus Atelocyanobacterium thalassa 0 384 species 713887 1 1 genus 603 263510 0 species 603 2546360 1 0 strain 603 43989 1 Cyanothece sp. ATCC 51142 0 0 1 92682 358 no rank 1 358 genus 76023 0 0 1 no rank 358 2632878 Halothece sp. PCC 7418 0 1 358 species 65093 28070 1484 genus 2 0 2546356 species 652 1 0 0 Cyanothece sp. PCC 7424 65393 652 strain 1 0 1 2546359 832 species 1 497965 832 strain 0 Cyanothece sp. PCC 7822 2 650 genus 2546365 0 0 species 650 2546366 2 0 Cyanothece sp. PCC 8802 1 395962 269 strain 381 strain 41431 1 Cyanothece sp. PCC 8801 0 1890452 family 828 1 0 102234 828 genus 1 0 1 379064 species 828 0 Cyanobacterium aponinum Microcystaceae 0 21 4 1 1592 family 1890449 0 Microcystis 20 1 3 1125 1571 genus 1 no rank 507 2643300 0 1 species 507 1967666 Microcystis sp. MC19 0 1 1044 species 1126 Microcystis aeruginosa 0 1 7 1890464 family 3028 0 Chroococcaceae 13 669357 genus 1908 1 3 13 0 Geminocystis 2625037 1895 no rank 2 0 0 Geminocystis sp. NIES-3709 1617448 1009 species 1 886 species 1615909 1 Geminocystis sp. NIES-3708 0 0 707 genus 268175 1 2648896 707 no rank 1 0 Chondrocystis sp. NIES-4102 0 1 species 707 2005460 5 0 Gloeocapsa 102231 genus 400 1 2 2623012 no rank 395 1 0 1173026 species 395 1 0 Gloeocapsa sp. PCC 7428 14 0 Pleurocapsales 52604 order 2059 1 8 Hyellaceae 0 4 3 1 493 family 1890500 2 Pleurocapsa 0 489 genus 44474 2 1 1 54308 487 species 0 Pleurocapsa minor 1 4 1890498 1552 family 0 Dermocarpellaceae 15 3 1 genus 1537 102115 Stanieria 0 5 0 no rank 613 2642663 1 Stanieria sp. NIES-3757 0 species 613 1807358 1 Stanieria cyanosphaera 0 species 919 102116 1 0 3 1890505 468 order 3 1 468 family 1890528 Chroococcidiopsidaceae 0 2 54298 466 genus 1 2 2 0 Chroococcidiopsis 54299 464 species 1 0 Chroococcidiopsis thermalis 6 1 class 4378 307596 Gloeobacteria 0 28 54 0 Gloeobacterales 307595 4350 order 1 5 Gloeobacteraceae 0 27 4 1 family 4296 1890422 Gloeobacter 0 55 3 1 genus 4269 33071 1 33072 species 2511 0 Gloeobacter violaceus 1 1703 species 1416614 Gloeobacter kilaueensis 0 1161 16820 order 1 34 32 0 Nostocales 3 0 Hapalosiphonaceae 1892263 510 family 1 3 0 Fischerella 1 1 2 1190 507 genus 494603 506 no rank 1 0 Fischerella sp. NIES-3754 0 species 506 1752063 1 0 no rank 482 1219117 1 482 species 1940762 1 Nostocales cyanobacterium HT-58-2 0 9879 family 1162 18 1 28 Nostocaceae 0 1163 2282 genus 1 4 5 0 Anabaena 1 species 762 1165 Anabaena cylindrica 0 0 2619674 1515 no rank 2 736 species 1647413 1 Anabaena sp. WA102 0 0 Anabaena sp. 90 46234 species 779 1 Nostoc 0 66 10 1 6275 genus 1177 7 2593658 no rank 4255 0 525 species 1869241 1 Nostoc sp. CENA543 0 0 Nostoc sp. NIES-3756 1 1751286 708 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 0 species 1055 1261031 1 species 689 1618022 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 317936 species 412 1 0 Nostoc sp. PCC 7107 28072 species 422 1 0 Nostoc sp. PCC 7524 species 444 103690 1 Nostoc sp. PCC 7120 0 1306274 1247 species 1 0 Nostoc flagelliforme 1 272131 707 species 0 Nostoc punctiforme 264688 1294 genus 1 3 7 0 Trichormus 1 264691 species 631 0 Trichormus variabilis species 656 1164 1 Trichormus azollae 0 1185 1269 family 1 3 12 0 Rivulariaceae 0 Rivularia 6 1 2 373984 genus 1257 1251 no rank 2676603 1 0 Rivularia sp. PCC 7116 0 species 1251 373994 1 4648 family 2661849 8 0 Calothrix 0 30 8 1 4648 genus 1186 3851 no rank 2619626 6 0 Calothrix sp. NIES-3974 0 1 465 species 2005462 0 Calothrix sp. NIES-4071 2005469 1438 species 1 species 635 2005461 1 Calothrix sp. NIES-4101 0 Calothrix sp. 336/3 0 species 442 1337936 1 0 Calothrix sp. NIES-2098 1954171 413 species 1 1 99598 species 458 0 Calothrix sp. PCC 7507 Calothrix parietina 0 1 767 species 32054 1 55 1890424 38757 order 0 Synechococcales 349 Prochloraceae 0 4 5 1 family 4453 1213 1 4 1218 4449 genus 0 Prochlorococcus 5 839 no rank 2627481 2 0 1501268 414 species 1 0 Prochlorococcus sp. MIT 0604 Prochlorococcus sp. MIT 0801 0 1 species 425 1501269 0 Prochlorococcus marinus 1 1219 species 3605 0 Leptolyngbyaceae 27 1 6 1890438 3759 family 18 Leptolyngbya 0 genus 3732 47251 5 1 0 3 no rank 3123 2650499 0 Leptolyngbya sp. PCC 7376 111781 515 species 1 615 species 1752064 1 Leptolyngbya sp. NIES-3755 0 0 Leptolyngbya sp. O-77 1080068 1993 species 1 0 Leptolyngbya boryana 1 1184 591 species family 385 1890436 3 1 1 Pseudanabaenaceae 0 0 Pseudanabaena 9 1 2 1152 384 genus 0 2593292 375 no rank 1 1 species 375 82654 Pseudanabaena sp. PCC 7367 0 0 2303730 881 family 2 881 genus 170610 2 1 12 Halomicronema 0 1 1209493 869 species 0 Halomicronema hongdechloris 0 2 1890429 family 737 Acaryochloris 0 2 2 1 737 genus 155977 1 species 735 155978 Acaryochloris marina 0 125 Synechococcaceae 0 26295 family 1890426 32 1 0 Cyanobium 44 1 3 167375 6742 genus 0 1 3450 no rank 2627006 1 3450 species 1851505 Cyanobium sp. NIES-981 0 Cyanobium gracile 0 1 3248 species 59930 1 13034 481 genus 0 1 481 species 292566 Dactylococcopsis salina 0 1129 18704 genus 1 26 284 0 Synechococcus 1 33070 species 472 0 Synechococcus lividus 0 2626047 no rank 17355 23 1 1030 species 29410 Synechococcus sp. WH 8103 0 Synechococcus sp. CC9902 0 380 species 316279 1 1827144 291 species 1 0 Synechococcus sp. NIES-970 1 465 species 1280380 Synechococcus sp. KORDI-100 0 0 Synechococcus sp. PCC 7117 195498 196 species 1 1 species 606 1173263 Synechococcus sp. PCC 7502 0 Synechococcus sp. WH 8109 0 species 1009 166314 1 1 764 species 110662 Synechococcus sp. CC9605 0 Synechococcus sp. PCC 6312 0 1 507 species 195253 316278 1269 species 1 0 Synechococcus sp. RCC307 321327 species 2147 1 0 Synechococcus sp. JA-3-3Ab 0 Synechococcus sp. PCC 7002 1 32049 species 345 species 1109 585423 1 Synechococcus sp. KORDI-49 0 0 Synechococcus sp. CC9311 64471 398 species 1 species 710 32051 1 Synechococcus sp. WH 7803 0 1 746 species 1350461 Synechococcus sp. UTEX 2973 0 species 250 374982 1 Synechococcus sp. PCC 73109 0 1 species 558 374981 Synechococcus sp. PCC 7003 0 1264 species 321332 1 Synechococcus sp. JA-2-3B'a(2-13) 0 0 Synechococcus sp. KORDI-52 1 585425 852 species 0 Synechococcus sp. PCC 8807 1 195248 339 species 1 1082 species 1916956 Synechococcus sp. SynAce01 0 1 1038 species 84588 Synechococcus sp. WH 8102 0 Synechococcus elongatus 0 1 593 species 32046 0 1 243 genus 146785 0 Thermosynechococcus elongatus 146786 species 243 1 0 family 1898 1890428 4 1898 genus 1142 4 1 35 Synechocystis 0 no rank 1863 2640012 3 0 species 640 2116702 1 Synechocystis sp. IPPAS B-1465 0 640 species 1148 1 Synechocystis sp. PCC 6803 0 1147 species 583 1 0 Synechocystis sp. PCC 6714 0 65695 clade 1783257 96 2 0 Planctomycetes 203682 21234 phylum 1 37 2517206 class 938 2 0 1 2 1127829 order 938 0 Candidatus Brocadiales 25 0 1 1127830 913 family 0 380738 913 genus 1 1 174633 species 913 0 Candidatus Kuenenia stuttgartiensis 14 0 Phycisphaerae 666505 3291 class 1 7 2 2483366 1411 order 0 2483367 family 1411 2 0 2 2483368 1411 genus 0 1 882 species 1941349 Phycisphaerae bacterium ST-PulAB-D4 0 Phycisphaerae bacterium L21-RPul-D3 0 1 species 529 1940790 62 0 Phycisphaerales 666506 order 1866 1 4 1 3 666507 family 1804 0 Phycisphaeraceae 19 0 Phycisphaera 31 1 2 666508 1785 genus 0 Phycisphaera mikurensis 1 547188 1754 species 88 0 Planctomycetia 203683 17003 class 1 27 6 order 1834 2691354 0 0 2 2691358 family 680 Thermogutta 0 3 2 1 genus 680 1676125 1 1331910 species 677 0 Thermogutta terrifontis 4 2691357 family 1154 0 1 Rhodopirellula 0 genus 703 265488 2 1 0 Rhodopirellula baltica 265606 702 species 1 451 genus 123 2 1 1 Pirellula 0 0 Pirellula staleyi 125 450 species 1 0 7 2691356 5354 order 0 Isosphaeraceae 17 1 7 1763524 5354 family 64 0 Paludisphaera 1763521 2631 genus 1 2 Paludisphaera borealis 0 species 2567 1387353 1 14 0 Isosphaera 127 1272 genus 1 2 species 1258 128 1 Isosphaera pallida 0 Singulisphaera 0 2 2 1 1434 genus 466152 Singulisphaera acidiphila 0 1 1432 species 466153 112 order 8483 1 10 257 0 Planctomycetales Planctomycetaceae 0 34 9 1 family 8226 126 0 Fuerstia 5 1 2 1936111 genus 889 0 Fuerstia marisgermanicae 1 1891926 species 884 1 genus 979 1649480 0 1 species 979 120 Planctopirus limnophila 0 0 Planctomyces 30 1 3 118 genus 5503 2 2648843 no rank 5473 0 1632864 species 1534 1 0 Planctomyces sp. SH-PL14 Planctomyces sp. SH-PL62 0 1 3939 species 1636152 2 1 821 genus 1649490 Rubinisphaera 0 4 0 Rubinisphaera brasiliensis 119 species 817 1 0 1244 order 2691355 3 1 3 1914233 1244 family 0 Gemmataceae 1 5 0 Gemmata 113 genus 1243 1 2 0 2622970 1238 no rank 1 Gemmata sp. SH-PL17 0 1 1238 species 1630693 0 256845 phylum 11114 3 1 3 1313211 11114 class 0 Lentisphaeria 49 2849 Victivallales 0 11065 order 278082 2 1 0 1 1674876 no rank 8216 2094242 species 8216 1 0 Victivallales bacterium CCUG 44730 0 5 134625 1557 phylum 8 Kiritimatiellae 0 class 1557 1921781 5 1 order 1549 1921782 4 1 12 Kiritimatiellales 0 Kiritimatiellaceae 0 8 3 1 family 1537 1921783 2 1 genus 1529 1921784 Kiritimatiella 0 21 0 Kiritimatiella glycovorans 1307763 species 1508 1 29 1 28856 phylum 74201 Verrucomicrobia 0 31 1 6 203494 class 16672 0 Verrucomicrobiae 10 48461 order 16662 1 5 22 0 Verrucomicrobiales Akkermansiaceae 0 80 4 1 family 16640 1647988 51 Akkermansia 0 genus 16560 239934 3 1 0 Akkermansia glycaniphila 1679444 2044 species 1 Akkermansia muciniphila 0 1 species 14465 239935 134549 class 83 2 0 134550 genus 83 1 2 5 0 Candidatus Xiphinematobacter 1 2648876 no rank 78 0 78 species 1704307 1 Candidatus Xiphinematobacter sp. Idaho Grape 0 154 Opitutae 0 8584 class 414999 12 1 1 7 415000 order 7858 0 Opitutales 177 0 Opitutaceae 81 1 6 134623 7681 family 1 278955 3290 no rank 0 1 794903 species 3290 0 Opitutaceae bacterium TAV5 20 Opitutus 0 genus 1872 178440 2 1 1 species 1852 107709 Opitutus terrae 0 1961799 genus 2438 1 2 39 0 Lacunisphaera 0 Lacunisphaera limnophila 1 1838286 2399 species 1 4 415001 order 572 0 Puniceicoccales 11 2 Puniceicoccaceae 0 561 family 415002 3 1 Coraliomargarita 0 12 2 1 genus 559 442430 Coraliomargarita akajimensis 0 547 species 395922 1 0 no rank 2875 417295 2 0 Verrucomicrobia bacterium IMCC26134 1637999 1543 species 1 2026799 1332 species 1 0 Verrucomicrobia bacterium 611 class 1955630 6 1 3 Methylacidiphilae 0 5 1 608 order 717963 Methylacidiphilales 0 1 1 4 717964 family 607 0 Methylacidiphilaceae 1 3 1 606 genus 511745 Methylacidiphilum 0 4 species 337 511746 1 Methylacidiphilum infernorum 0 0 Methylacidiphilum fumariolicum 1 591154 265 species 22 2934 phylum 204428 0 class 2934 204429 22 1 9 Chlamydiia 0 5 Parachlamydiales 0 1383 order 1963360 8 1 2 1 169 family 92712 Simkaniaceae 0 10 1 159 genus 34093 0 1 159 species 83561 Simkania negevensis 0 348 family 92714 2 0 Waddlia 0 1 2 1 genus 348 71666 Waddlia chondrophila 0 347 species 71667 1 1 3 92713 861 family 0 Parachlamydiaceae 1 282132 342 genus 1 0 0 Candidatus Protochlamydia naegleriophila 389348 342 species 1 0 1 83551 518 genus 0 Parachlamydia acanthamoebae 83552 species 518 1 0 13 51291 1542 order 13 1 1542 family 809 Chlamydiaceae 0 9 0 1113537 no rank 1533 12 genus 1533 810 12 1 84 Chlamydia 0 0 Chlamydia avium 1457141 species 144 1 83558 70 species 1 0 Chlamydia pneumoniae Chlamydia psittaci 0 1 86 species 83554 0 Chlamydia muridarum 83560 135 species 1 1 83555 97 species 0 Chlamydia abortus Chlamydia pecorum 0 1 118 species 85991 1457153 322 species 1 0 Chlamydia gallinacea 0 Chlamydia felis 83556 species 121 1 0 Chlamydia trachomatis 813 112 species 1 Chlamydia caviae 0 70 species 83557 1 Chlamydia suis 0 1 174 species 83559 0 200918 phylum 16402 43 15 Thermotogae 0 16402 class 188708 43 1 order 1158 1643946 7 1 1 Kosmotogales 0 22 Kosmotogaceae 0 family 1157 1643948 6 1 genus 795 651456 3 1 2 Kosmotoga 0 1 484 species 1330330 Kosmotoga pacifica 0 Kosmotoga olearia 0 1 309 species 651457 1 2 1184396 340 genus 0 Mesotoga 6 1184387 species 334 1 0 Mesotoga prima 1 28 2419 order 10154 0 Thermotogales 9 10 1 4628 family 1643950 Fervidobacteriaceae 0 11 4 1 1349 genus 2422 Fervidobacterium 0 8 species 555 93466 1 Fervidobacterium pennivorans 0 434 species 2424 1 Fervidobacterium nodosum 0 Fervidobacterium islandicum 0 1 species 352 2423 3268 genus 2420 5 1 4 Thermosipho 0 1 2421 1163 species 0 Thermosipho africanus 1483 no rank 2676525 2 0 1 species 740 1437364 Thermosipho sp. 1070 0 Thermosipho sp. 1063 0 743 species 1462747 1 species 618 46541 1 Thermosipho melanesiensis 0 21 Thermotogaceae 0 family 5517 188709 17 1 Pseudothermotoga 0 94 5 1 2182 genus 1643951 267 species 119394 1 Pseudothermotoga thermarum 0 1 666 species 177758 Pseudothermotoga lettingae 0 0 Pseudothermotoga hypogea 1 57487 species 446 38322 species 709 1 0 Pseudothermotoga elfii Thermotoga 0 141 11 1 genus 3314 2335 Thermotoga naphthophila 0 1 species 338 93930 0 1032 no rank 2631113 4 Thermotoga sp. RQ2 0 1 species 196 126740 0 Thermotoga sp. RQ7 126738 species 324 1 1 species 264 1157948 Thermotoga sp. 2812B 0 0 Thermotoga sp. Cell2 1157947 species 248 1 2337 358 species 1 0 Thermotoga neapolitana 1 1508419 species 335 0 Thermotoga caldifontis 0 Thermotoga profunda 1 1508420 605 species 2336 species 221 1 0 Thermotoga maritima 0 Thermotoga petrophila 93929 species 284 1 7 Petrotogales 0 order 5075 1643947 7 1 5068 family 1643949 6 0 Marinitoga 0 37 3 1 genus 3436 160798 1621 species 149715 1 Marinitoga piezophila 0 0 2640159 no rank 1778 1 1778 species 1545835 1 Marinitoga sp. 1137 0 0 genus 1046 1511648 1 1 1046 species 1006576 Defluviitoga tunisiensis 0 1 2 28236 genus 586 0 Petrotoga 1 Petrotoga mobilis 0 1 585 species 69499 5 1930617 phylum 1813 0 5 1 class 1813 1962850 Calditrichae 0 5 order 1808 1962852 4 1 1 Calditrichales 0 5 0 Calditrichaceae 1962854 1807 family 1 3 Caldithrix 0 10 2 1 genus 1802 187144 Caldithrix abyssi 0 species 1792 187145 1 0 32066 46296 phylum 24 45 0 Fusobacteriia 203490 46296 class 1 24 23 1 order 46251 203491 Fusobacteriales 0 84 Leptotrichiaceae 0 21 10 1 family 12628 1129771 0 Sneathia 2 1 2 168808 2238 genus species 2236 187101 1 Sneathia amnii 0 1 34104 1887 genus 0 34105 1887 species 1 0 Streptobacillus moniliformis 32068 genus 1788 1 0 Sebaldella termitidis 0 1788 species 826 1 genus 6694 32067 5 1 28 Leptotrichia 0 1 40542 1468 species 0 Leptotrichia buccalis 3 5198 no rank 2633022 0 1 1732 species 712368 Leptotrichia sp. oral taxon 498 0 1 1792 species 1785996 Leptotrichia sp. oral taxon 847 0 Leptotrichia sp. oral taxon 212 0 1 1674 species 712357 12 1 33539 family 203492 Fusobacteriaceae 0 80 2 Ilyobacter 0 genus 1228 167639 2 1 0 Ilyobacter polytropus 1 167642 species 1226 genus 32231 848 9 1 164 Fusobacterium 0 860 6346 species 1 0 Fusobacterium periodonticum 1 species 2710 850 Fusobacterium mortiferum 0 Fusobacterium varium 0 species 4938 856 1 0 Fusobacterium hwasookii 1 1583098 3459 species Fusobacterium ulcerans 0 2545 species 861 1 1 954 species 859 Fusobacterium necrophorum 0 1 849 920 species 0 Fusobacterium gonidiaformans 0 Fusobacterium nucleatum 851 10195 species 1 0 200938 3357 phylum 5 19 Chrysiogenetes 0 3357 class 118001 5 1 0 Chrysiogenales 31 1 4 189769 3338 order 9 0 Chrysiogenaceae 189770 family 3307 1 3 19 0 Desulfurispirillum 393029 3298 genus 1 2 Desulfurispirillum indicum 0 1 3279 species 936456 0 phylum 3050 200930 8 0 Deferribacteres 10 1 8 68337 class 3050 1 7 191393 3040 order 0 Deferribacterales 9 family 3031 191394 6 1 23 Deferribacteraceae 0 0 1 2351 genus 684 1 684 species 2352 Flexistipes sinusarabici 0 117999 693 genus 1 0 118000 693 species 1 0 Denitrovibrio acetiphilus 0 654 genus 545865 1 0 Calditerrivibrio nitroreducens 477976 654 species 1 1 0 Deferribacter 53572 977 genus 1 2 976 species 197162 1 Deferribacter desulfuricans 0 0 2 391 phylum 2138240 0 class 391 2138243 2 0 391 order 2138246 2 0 2 391 family 2138247 1 0 Coprothermobacter 68335 391 genus 1 2 35786 species 390 1 0 Coprothermobacter proteolyticus 4 2498710 770 clade 0 0 4 phylum 770 67814 0 Caldisericia 2 1 4 693071 770 class 0 3 693072 order 768 0 Caldisericaceae 2 1 3 693073 family 768 Caldisericum 0 10 2 1 genus 766 693074 1 756 species 693075 Caldisericum exile 0 3 Elusimicrobia 0 2354 phylum 74152 7 1 1 603 no rank 99260 0 0 uncultured Termite group 1 bacterium 1 167965 603 species 0 class 516 641853 2 2 516 order 641854 0 0 Elusimicrobiaceae 2 1 2 641876 516 family 0 514 genus 423604 1 423605 species 514 1 0 Elusimicrobium minutum 447830 class 1232 3 0 0 3 1232 order 1783344 0 Endomicrobiaceae 1 1 3 1783343 1232 family 1231 genus 1408194 2 0 1408281 676 species 1 0 Endomicrobium proavitum Candidatus Endomicrobium trichonymphae 0 species 555 1408204 1 0 200940 phylum 1998 8 1998 class 67799 8 1 3 Thermodesulfobacteria 0 9 0 Thermodesulfobacteriales 188710 1995 order 1 7 6 1 1986 family 188711 Thermodesulfobacteriaceae 0 13 1 444090 genus 236 0 1653476 236 species 1 0 Caldimicrobium thiodismutans 241192 671 genus 1 0 1 171695 671 species 0 Thermodesulfatator indicus genus 1066 1740 3 1 1 Thermodesulfobacterium 0 1295609 species 735 1 0 Thermodesulfobacterium geofontis Thermodesulfobacterium commune 0 1 species 330 1741 12 508458 14826 phylum 0 0 Synergistia 32 1 12 649775 14826 class Synergistales 0 47 11 1 14794 order 649776 1 10 649777 14747 family 0 Synergistaceae 199 0 1 336260 314 genus Thermovirga lienii 0 314 species 336261 1 1 2 81466 genus 770 0 Aminobacterium 1 Aminobacterium colombiense 0 species 769 81468 1 1 2 508459 11804 genus 0 Cloacibacillus 6 1 species 11798 1197717 Cloacibacillus porcorum 0 81461 1229 genus 1 2 31 0 Thermanaerovibrio species 1198 81462 1 Thermanaerovibrio acidaminovorans 0 49894 genus 431 1 2 1 0 Acetomicrobium 0 Acetomicrobium mobile 97477 430 species 1 Proteobacteria 0 1109 2009 1 phylum 2903635 1224 0 Gammaproteobacteria 2290 1 881 1236 class 1318513 0 Vibrionales 38 1 44 135623 order 29317 641 29279 family 1 43 137 0 Vibrionaceae 0 Grimontia 11 1 2 246861 848 genus 0 Grimontia hollisae 673 837 species 1 2042066 740 genus 1 2 1 0 Paraphotobacterium 0 Paraphotobacterium marinum 1755811 species 739 1 662 genus 23426 1 30 379 0 Vibrio 0 Vibrio cholerae 666 1189 species 1 1 species 1227 676 Vibrio fluvialis 0 0 2614977 1113 no rank 2 Vibrio sp. 2521-89 0 619 species 2014742 1 1116375 species 494 1 0 Vibrio sp. EJY3 1 species 580 553239 Vibrio breoganii 0 337 species 212663 1 Vibrio tasmaniensis 0 Vibrio mimicus 0 1 species 1102 674 0 Vibrio furnissii 1 29494 species 828 0 10 7885 species group 717610 0 Vibrio parahaemolyticus 670 1088 species 1 1 766224 415 species 0 Vibrio jasicida 1079 species 680 1 Vibrio campbellii 0 Vibrio natriegens 0 1 1054 species 691 1 190895 species 327 0 Vibrio rotiferianus 0 Vibrio alginolyticus 663 1331 species 1 599 species 696485 1 Vibrio owensii 0 0 Vibrio harveyi 669 873 species 1 2 species subgroup 1119 2315253 0 0 Vibrio diabolicus 1 50719 species 708 Vibrio antiquarius 0 411 species 150340 1 364 species group 1891919 1 0 364 species 29498 1 Vibrio tubiashii 0 Vibrio coralliilyticus 0 1 1074 species 190893 0 Vibrio qinghaiensis 1 2025808 347 species 0 Vibrio anguillarum 55601 species 952 1 Vibrio gazogenes 0 1 species 526 687 Vibrio tritonius 0 1 species 838 1435069 518 species 45658 1 Vibrio scophthalmi 0 1 1534743 626 species 0 Vibrio hyugaensis Vibrio tapetis 0 409 species 52443 1 Vibrio nigripulchritudo 0 807 species 28173 1 0 Vibrio vulnificus 1 672 2325 species 4 1 2681 genus 657 Photobacterium 0 12 species 754 74109 1 Photobacterium profundum 0 1 893 species 38293 Photobacterium damselae 0 1 species 1022 1295392 Photobacterium gaetbulicola 0 19 0 Aliivibrio 511678 1447 genus 1 4 0 Aliivibrio salmonicida 1 40269 species 408 668 561 species 1 0 Aliivibrio fischeri Aliivibrio wodanis 0 1 species 459 80852 1936 Enterobacterales 0 544012 order 91347 244 1 family 373287 543 117 1 2919 Enterobacteriaceae 0 5 no rank 8035 36866 0 species 1702 1920128 1 Enterobacteriaceae bacterium ENNIH3 0 1 693444 species 1335 0 Enterobacteriaceae bacterium strain FGI 57 1920109 1603 species 1 0 Enterobacteriaceae bacterium ENNIH2 1 891974 species 2048 0 Plautia stali symbiont 0 Enterobacteriaceae bacterium ENNIH1 1 2066051 1347 species 0 1 409304 475 genus 168169 species 475 1 0 Candidatus Ishikawaella capsulata 1 8 413496 genus 12482 0 Cronobacter 276 413502 species 1328 1 0 Cronobacter turicensis 1 species 1525 413497 Cronobacter dublinensis 0 0 Cronobacter condimenti 1163710 1636 species 1 Cronobacter muytjensii 0 1 2398 species 413501 0 Cronobacter malonaticus 1 413503 1202 species species 2425 28141 1 Cronobacter sakazakii 0 0 Cronobacter universalis 535744 1692 species 1 3259 Klebsiella 0 158362 genus 570 10 1 1 1463165 species 10405 0 Klebsiella quasipneumoniae 571 species 9186 1 0 Klebsiella oxytoca 548 3836 species 1 0 Klebsiella aerogenes 2608929 no rank 5326 2 0 1 1880 species 1905288 Klebsiella sp. LTGPAF-6F 0 Klebsiella sp. M5al 0 1 species 3446 1934254 1 species 4146 1134687 Klebsiella michiganensis 0 1 18417 species 244366 Klebsiella variicola 0 2026240 9728 species 1 0 Klebsiella quasivariicola 573 species 94059 1 0 Klebsiella pneumoniae Shimwellia 0 8 2 1 2512 genus 1335483 563 2504 species 1 0 Shimwellia blattae 311 0 Leclercia 83654 genus 5595 1 4 1593 species 83655 1 Leclercia adecarboxylata 0 2627398 3691 no rank 2 0 0 Leclercia sp. LSNIH3 1 1920116 1584 species 1920114 species 2107 1 0 Leclercia sp. LSNIH1 0 1 1280 genus 579 Kluyvera intermedia 0 1 1280 species 61648 0 1 360 genus 401618 1 360 species 401619 Candidatus Riesia pediculicola 0 1330547 genus 6693 1 5 118 0 Kosakonia Kosakonia radicincitans 0 1 species 1820 283686 208223 species 2203 1 0 Kosakonia cowanii 1 1131 species 1158459 Kosakonia sacchari 0 1 1421 species 497725 Kosakonia oryzae 0 1 5 561 genus 32657 0 Escherichia 309 1499973 species 1080 1 0 Escherichia marmotae 1 208962 2779 species 0 Escherichia albertii 1 species 998 564 Escherichia fergusonii 0 0 Escherichia coli 1 562 species 27491 1 genus 74 1048757 0 0 Candidatus Moranella endobia 1 1048758 species 74 1 22 547 genus 55914 0 Enterobacter 4186 9 2608935 no rank 9164 0 species 879 1827481 1 Enterobacter sp. ODB01 0 Enterobacter sp. CRENT-193 0 species 1238 2051905 1 1 species 543 1560339 Enterobacter sp. E20 0 1 1914861 1877 species 0 Enterobacter sp. SA187 1166130 1181 species 1 0 Enterobacter sp. R4-368 Enterobacter sp. FY-07 0 species 1122 1692238 1 799 species 1868135 1 Enterobacter sp. HK169 0 Enterobacter sp. 638 0 1 species 897 399742 0 Enterobacter sp. Crenshaw 1 1977566 628 species 0 12 species group 42564 354276 1 208224 species 863 0 Enterobacter kobei 974 species 299767 1 Enterobacter ludwigii 0 0 Enterobacter cancerogenus 1 69218 species 1286 Enterobacter hormaechei 0 9772 3 1 species 12242 158836 1 1812934 1551 subspecies 0 Enterobacter cloacae complex 'Hoffmann cluster III' 1296536 subspecies 919 1 0 Enterobacter xiangfangensis Enterobacter cloacae complex 'Hoffmann cluster IV' 0 938 species 1812935 1 0 Enterobacter asburiae 1 61645 3797 species 0 Enterobacter cloacae 550 species 19390 1 3 2757714 3074 no rank 0 Enterobacter cloacae complex sp. ECNIH7 0 1160 species 1915310 1 0 Enterobacter cloacae complex bacterium 1 2027919 1173 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 species 741 2077137 1 158483 genus 5195 1 2 20 0 Cedecea 0 Cedecea neteri 1 158822 5175 species Citrobacter 0 1129 14 1 31212 genus 544 Citrobacter farmeri 0 species 1255 67824 1 2644389 no rank 1944 2 0 Citrobacter sp. FDAARGOS_156 0 1 species 915 1702170 1920110 species 1029 1 0 Citrobacter sp. CFNIH10 7 1344959 species group 19800 0 57706 1601 species 1 0 Citrobacter braakii 0 Citrobacter freundii 546 species 11514 1 0 Citrobacter freundii complex sp. CFNIH4 2077148 species 986 1 0 Citrobacter freundii complex sp. CFNIH9 2077149 829 species 1 Citrobacter freundii complex sp. CFNIH3 0 1 901 species 2077147 67827 species 2201 1 0 Citrobacter werkmanii 0 Citrobacter freundii complex sp. CFNIH2 1 2066049 1768 species Citrobacter rodentium 0 1904 species 67825 1 Citrobacter amalonaticus 0 3481 species 35703 1 Citrobacter koseri 0 species 1699 545 1 1 3 590 19529 genus 0 Salmonella 34 54736 1114 species 1 0 Salmonella bongori 28901 18381 species 1 0 Salmonella enterica no rank 3095 191675 18 0 18 84563 3095 clade 0 248 genus 1906661 1 0 1 1070130 248 species 0 Candidatus Gullanella endobia 674 clade 146507 3 0 1 259 species 134287 secondary endosymbiont of Heteropsylla cubana 0 568987 genus 196 1 0 Candidatus Hamiltonella defensa 0 196 species 138072 1 219 species 1199245 1 secondary endosymbiont of Ctenarytaina eucalypti 0 1 Candidatus Tachikawaea 0 genus 347 1682492 2 1 Candidatus Tachikawaea gelatinosa 0 1 346 species 1410383 genus 308 1906660 1 0 Candidatus Mikella endobia 0 308 species 1778264 1 0 1 225 clade 199891 species 225 1835721 1 secondary endosymbiont of Trabutina mannipara 0 1 2 1906657 genus 161 0 Candidatus Doolittlea 2 1 1778262 species 159 0 Candidatus Doolittlea endobia clade 1034 84564 7 0 1034 genus 203804 7 1 3 Candidatus Blochmannia 0 251535 species 242 1 0 Candidatus Blochmannia vafer Candidatus Blochmannia chromaiodes 0 1 species 92 251542 0 2 711328 no rank 328 1 1505596 species 140 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505597 species 188 1 0 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus Candidatus Blochmannia floridanus 0 1 species 281 203907 Candidatus Blochmannia pennsylvanicus 0 1 species 88 101534 1 genus 98 1906659 0 Candidatus Hoaglandella endobia 0 1 species 98 1778263 1 3 1330546 genus 10098 0 Pluralibacter 92 [Enterobacter] lignolyticus 0 species 2300 1334193 1 0 Pluralibacter gergoviae 1 61647 species 7706 1 4 620 3703 genus 0 Shigella 346 0 1 2629414 no rank 1099 0 Shigella sp. PAMC 28760 1 1813821 1099 species 623 species 713 1 0 Shigella flexneri 1 622 species 1545 0 Shigella dysenteriae 3 1 genus 7778 160674 Raoultella 0 78 575 species 2227 1 0 Raoultella planticola species 5473 54291 1 Raoultella ornithinolytica 0 58 0 Lelliottia 1330545 genus 5319 1 4 1 1568 species 69220 Lelliottia nimipressuralis 0 1164 species 1907578 1 Lelliottia jeotgali 0 0 Lelliottia amnigena 1 61646 2529 species 1903410 family 29347 1 20 121 0 Pectobacteriaceae 0 Sodalis 91 1 5 84565 3390 genus 0 Sodalis glossinidius 1 63612 971 species 0 Sodalis praecaptivus 1 1239307 species 1140 1 species 1009 1486991 Candidatus Sodalis pierantonius 0 179 species 1929246 1 Sodalis endosymbiont of Henestaris halophilus 0 204037 13557 genus 1 6 517 0 Dickeya Dickeya zeae 0 2251 species 204042 1 1089444 species 4098 1 0 Dickeya solani 204038 species 2229 1 0 Dickeya dadantii species 2255 1778540 1 Dickeya fangzhongdai 0 204039 species 2207 1 0 Dickeya dianthicola genus 1362 71655 2 1 16 Brenneria 0 0 Brenneria goodwinii 1109412 1346 species 1 0 Pectobacterium 453 1 6 122277 10917 genus Pectobacterium wasabiae 0 species 1003 55208 1 0 Pectobacterium parmentieri 1 1905730 1026 species 1330 species 29471 1 Pectobacterium atrosepticum 0 1 554 species 4911 0 Pectobacterium carotovorum Pectobacterium polaris 0 1 species 2194 2042057 0 Hafniaceae 77 1 14 1903412 16343 family 40 0 Hafnia 568 2636 genus 1 3 0 Hafnia alvei 1 569 species 1474 2621980 1122 no rank 1 0 1848580 1122 species 1 0 Hafnia sp. CBA7124 20 Obesumbacterium 0 547 genus 82982 2 1 0 Obesumbacterium proteus 82983 species 527 1 Edwardsiella 0 882 8 1 13083 genus 635 0 Edwardsiella anguillarum 1821960 species 1694 1 Edwardsiella tarda 0 1 species 2806 636 67780 1220 species 1 0 Edwardsiella ictaluri 0 3500 no rank 2676541 2 0 Edwardsiella sp. EA181011 1 1578828 species 1831 1 1669 species 1650654 Edwardsiella sp. LADL05-105 0 1263550 1918 species 1 0 Edwardsiella piscicida 1 93378 species 1063 0 Edwardsiella hoshinae 188 Erwiniaceae 0 35343 family 1903409 27 1 2 1 genus 3629 32199 Buchnera 0 10 0 Buchnera aphidicola 1 9 species 3619 1 genus 661 51228 0 1 species 661 51229 Wigglesworthia glossinidia 0 726 genus 82986 2 1 9 Tatumella 0 Tatumella citrea 0 species 717 53336 1 8 1 6847 genus 551 Erwinia 0 291 1 species 1286 1619313 Erwinia gerundensis 0 1 182337 1627 species 0 Erwinia billingiae 1 338565 993 species 0 Erwinia tasmaniensis 0 Erwinia amylovora 1 552 species 824 1 2622719 no rank 897 0 1 897 species 215689 Erwinia sp. Ejp617 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 0 species 217 1922217 1 Erwinia pyrifoliae 0 1 species 712 79967 1 11 53335 genus 16681 0 Pantoea 1269 0 1654067 species group 2418 1 1 549 species 2418 0 Pantoea agglomerans 0 Pantoea vagans 470934 species 2803 1 Pantoea stewartii 0 1115 species 66269 1 0 Pantoea rwandensis 1 1076550 species 1185 0 Pantoea ananatis 553 1275 species 1 Pantoea alhagi 0 1 species 1328 1891675 0 no rank 4909 2630326 3 592316 1131 species 1 0 Pantoea sp. At-9b Pantoea sp. PSNIH2 0 species 2148 1484157 1 Pantoea sp. PSNIH1 0 species 1630 1484158 1 0 Candidatus Pantoea carbekii 1 1235990 379 species 0 2 2100764 6611 genus 665914 species 4140 1 0 Pantoea gaviniae 1 665913 species 2471 0 Pantoea calida 0 Morganellaceae 55 1 22 1903414 family 12726 0 Providencia 10 1 4 586 2435 genus Providencia stuartii 0 1 species 1463 588 Providencia alcalifaciens 0 1 species 359 126385 1 587 species 603 0 Providencia rettgeri 626 genus 2914 1 6 36 0 Xenorhabdus 1 species 979 40576 Xenorhabdus bovienii 0 0 Xenorhabdus poinarii 1 40577 species 409 Xenorhabdus nematophila 0 449 species 628 1 0 Xenorhabdus doucetiae 351671 576 species 1 1 species 465 351679 Xenorhabdus hominickii 0 106 Morganella 0 genus 3391 581 2 1 species 3285 582 1 Morganella morganii 0 29487 1531 genus 1 4 92 0 Photorhabdus Photorhabdus luminescens 0 1 species 513 29488 574560 452 species 1 0 Photorhabdus temperata 0 Photorhabdus asymbiotica 1 291112 474 species 3 1 genus 1938 583 Proteus 0 16 585 species 591 1 0 Proteus vulgaris 1 584 1331 species 0 Proteus mirabilis 2 1 genus 462 637 Arsenophonus 0 1 0 Arsenophonus symbiont of Lipoptena fortisetosa 1 634113 461 species Yersiniaceae 0 224 39 1 family 72908 1903411 1565532 42 genus 1 0 Rouxiella 34037 3480 genus 1 4 150 0 Rahnella species 1131 34038 1 Rahnella aquatilis 0 2 2635087 no rank 2199 0 1805933 species 1122 1 0 Rouxiella sp. ERMR1:05 1 1077 species 741091 Rahnella sp. Y9602 0 269 0 Yersinia 629 9955 genus 1 13 Yersinia aldovae 0 1 542 species 29483 1 478 species 29485 Yersinia rohdei 0 3 2052 species group 1649845 0 0 Yersinia similis 367190 436 species 1 1 species 876 633 Yersinia pseudotuberculosis 0 1 632 species 740 0 Yersinia pestis 0 Yersinia aleksiciae 1 263819 species 865 0 Yersinia frederiksenii 29484 1831 species 1 1 2653513 no rank 445 0 Yersinia sp. FDAARGOS_228 0 species 445 1839800 1 1 460 species 631 Yersinia intermedia 0 species 1950 630 1 Yersinia enterocolitica 0 Yersinia kristensenii 0 1 575 species 28152 1 29486 488 species 0 Yersinia ruckeri Chania 0 18 2 1 genus 1056 1745211 0 Chania multitudinisentens 1639108 1038 species 1 2 1 1917 genus 929812 Gibbsiella 0 4 0 Gibbsiella quercinecans 1 929813 1913 species 1 16 613 genus 56234 0 Serratia 2913 0 Serratia liquefaciens 614 species 1629 1 1 61651 species 3257 0 Serratia ficaria 1 2698 species 61652 Serratia rubidaea 0 Serratia proteamaculans 0 1207 species 28151 1 Serratia plymuthica 0 species 6140 82996 1 Serratia marcescens 0 1 species 18739 615 1 3531 species 47917 Serratia fonticola 0 0 2647522 16120 no rank 8 Serratia sp. AS13 0 1179 species 768493 1 0 Serratia sp. SSNIH1 1758196 2750 species 1 0 Serratia sp. SCBI 488142 species 2648 1 1 104623 802 species 0 Serratia sp. ATCC 39006 0 Serratia sp. AS12 1 768490 1180 species 0 Serratia sp. FGI94 671990 2441 species 1 0 Serratia sp. FS14 1327989 species 2686 1 species 2434 2033438 1 Serratia sp. MYb239 0 0 2 no rank 1357 451511 1 2 702 genus 1357 0 Plesiomonas 23 1334 species 703 1 Plesiomonas shigelloides 0 1903416 family 765 2 0 20 0 Pragia 82984 genus 765 1 2 1 species 745 82985 Pragia fontium 0 0 1240482 1340 order 3 3 family 1340 1240483 0 Gilliamella 0 5 2 1 genus 798 1193503 0 Gilliamella apicola 1 1196095 793 species 0 1 1335631 542 genus 0 Frischella perrara 1267021 species 542 1 0 Alteromonadales 207 1 105 135622 51138 order family 19118 72275 29 1 72 Alteromonadaceae 0 3 1 genus 548 89404 Glaciecola 0 1 1 300231 species 279 0 Glaciecola nitratireducens 1 2618684 no rank 268 0 1 983545 268 species 0 Glaciecola sp. 4H-3-7+YE-5 1 0 Agarivorans 261825 919 genus 1 2 Agarivorans gilvus 0 1 species 918 680279 0 1 genus 367 1621534 Paraglaciecola psychrophila 0 species 367 326544 1 Alteromonas 0 35 10 1 4686 genus 226 2614992 928 no rank 3 0 species 276 1917158 1 Alteromonas sp. RW2A1 0 1 species 418 1777491 Alteromonas sp. Mac1 0 0 Alteromonas sp. MB-3u-76 2058133 species 234 1 703 species 314275 1 Alteromonas mediterranea 0 490 species 715451 1 Alteromonas naphthalenivorans 0 Alteromonas macleodii 0 1 species 947 28108 534 species 589873 1 Alteromonas australica 0 1 432 species 287094 Alteromonas addita 0 1 233316 species 617 0 Alteromonas stellipolaris 175 0 Marinobacter 2742 genus 11299 1 10 no rank 3580 83889 3 0 1 1400 species 1671721 Marinobacter sp. CP1 0 490759 612 species 1 0 Marinobacter sp. BSs20148 0 Marinobacter sp. LQ44 1 1749259 1568 species 0 Marinobacter salinus 1874317 species 845 1 1 658 species 330734 Marinobacter psychrophilus 0 0 Marinobacter hydrocarbonoclasticus 2743 species 2084 1 1033846 1324 species 1 0 Marinobacter adhaerens 1614 species 1420917 1 Marinobacter salarius 0 Marinobacter similis 0 1 1019 species 1420916 0 Lacimicrobium 3 1 2 1751872 1227 genus 1 1526571 1224 species 0 Lacimicrobium alkaliphilum 8 Idiomarinaceae 0 1373 family 267893 6 1 3 Idiomarina 0 genus 1365 135575 5 1 0 Idiomarina loihiensis 135577 species 324 1 no rank 775 2614829 2 0 0 Idiomarina sp. X4 2055892 382 species 1 0 Idiomarina sp. OT37-5b 1 2100422 species 393 1 1096243 species 263 0 Idiomarina piscisalsi 0 Psychromonadaceae 25 1 4 267894 1222 family 9 0 Psychromonas 67572 genus 1197 1 3 601 species 357794 1 Psychromonas ingrahamii 0 1 2614957 587 no rank 0 species 587 314282 1 Psychromonas sp. CNPT3 0 11 Colwelliaceae 0 4910 family 267889 9 1 8 Colwellia 0 genus 4488 28228 6 1 3222 no rank 196834 3 0 Colwellia sp. PAMC 20917 0 1 species 531 1816218 0 Colwellia sp. MT41 58049 1576 species 1 1115 species 1816219 1 Colwellia sp. PAMC 21821 0 1 28229 species 507 0 Colwellia psychrerythraea Colwellia beringensis 0 751 species 1967665 1 22 Thalassotalea 0 genus 411 1518149 2 1 1 389 species 1763536 Thalassotalea crassostreae 0 1794 family 267892 3 1 4 Ferrimonadaceae 0 Ferrimonas 0 36 2 1 genus 1790 44011 Ferrimonas balearica 0 1754 species 44012 1 34 Pseudoalteromonadaceae 0 family 10087 267888 25 1 genus 10053 53246 24 1 262 Pseudoalteromonas 0 5 194690 2023 no rank 0 1 species 508 283699 Pseudoalteromonas sp. Bsw20308 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv 0 1 species 474 1720343 species 419 234831 1 Pseudoalteromonas sp. SM9913 0 Pseudoalteromonas sp. NC201 0 1 species 357 1514074 1 265 species 1761891 Pseudoalteromonas sp. 13-15 0 0 Pseudoalteromonas atlantica 288 659 species 1 0 Pseudoalteromonas issachenkonii 1 152297 species 366 0 Pseudoalteromonas translucida 1 166935 280 species species 251 43657 1 Pseudoalteromonas luteoviolacea 0 Pseudoalteromonas spongiae 0 1 701 species 298657 0 Pseudoalteromonas marina 1 267375 281 species 1 species 424 247523 Pseudoalteromonas aliena 0 1 401 species 176102 Pseudoalteromonas agarivorans 0 0 Pseudoalteromonas piratica 1 1348114 600 species 1 450 species 28107 Pseudoalteromonas espejiana 0 0 Pseudoalteromonas piscicida 43662 348 species 1 1 28109 348 species 0 Pseudoalteromonas nigrifaciens 1 228 species 321 0 Pseudoalteromonas haloplanktis 0 Pseudoalteromonas tetraodonis 1 43659 328 species Pseudoalteromonas phenolica 0 species 576 161398 1 Pseudoalteromonas rubra 0 1 species 470 43658 0 Pseudoalteromonas arctica 394751 species 507 1 1 314281 457 species 0 Pseudoalteromonas tunicata 28 Shewanellaceae 0 family 11833 267890 25 1 22 genus 11805 1 24 106 0 Shewanella 0 Shewanella piezotolerans 1 404011 398 species 93973 329 species 1 0 Shewanella japonica Shewanella amazonensis 0 1 984 species 60478 6 no rank 2404 196818 0 475 species 60480 1 Shewanella sp. MR-4 0 1 2029986 294 species 0 Shewanella sp. WE21 0 Shewanella sp. MR-7 1 60481 species 457 Shewanella sp. ANA-3 0 568 species 94122 1 351745 species 209 1 0 Shewanella sp. W3-18-1 2059264 401 species 1 0 Shewanella sp. Pdp11 1 2018305 species 424 0 Shewanella bicestrii 0 Shewanella denitrificans 1 192073 species 363 1 225848 species 629 0 Shewanella psychrophila 555 species 260364 1 Shewanella marisflavi 0 0 Shewanella halifaxensis 1 271098 species 658 70864 species 438 1 0 Shewanella pealeana Shewanella woodyi 0 species 512 60961 1 Shewanella sediminis 0 species 437 271097 1 1 species 341 60217 Shewanella violacea 0 Shewanella loihica 0 1 982 species 359303 Shewanella putrefaciens 0 357 species 24 1 1 species 432 56812 Shewanella frigidimarina 0 70863 385 species 1 0 Shewanella oneidensis Shewanella baltica 0 1071 species 62322 1 594 family 267891 3 1 4 Moritellaceae 0 14 Moritella 0 genus 590 58050 2 1 1 80854 species 576 0 Moritella viscosa 5855 no rank 118884 13 0 641 clade 198346 1 0 1 641 species 186490 Candidatus Baumannia cicadellinicola 0 genus 1307 1608298 2 1 8 Thiolapillus 0 1 1076588 1299 species 0 Thiolapillus brandeum genus 1282 349742 2 1 4 Sedimenticola 0 1278 species 1543721 1 Sedimenticola thiotaurini 0 538 genus 655184 3 1 1 Candidatus Thioglobus 0 0 Candidatus Thioglobus singularis 1 1427364 species 265 1705394 272 species 1 0 Candidatus Thioglobus autotrophicus 0 Pseudohongiella 1 1 2 1524249 662 genus 1249552 species 661 1 0 Pseudohongiella spirulinae 3 clade 1425 32036 0 species 613 410330 1 Calyptogena okutanii thioautotrophic gill symbiont 0 1541743 genus 370 1 0 0 Candidatus Ruthia magnifica 1 386487 species 370 1 species 442 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont 0 50 1 order 40955 135613 Chromatiales 0 732 2 2520 no rank 451214 0 43 Thiohalobacter 0 2520 genus 1273155 2 1 Thiohalobacter thiocyanaticus 0 species 2477 585455 1 1 18 72276 family 17401 0 Ectothiorhodospiraceae 192 41 0 Alkalilimnicola 133193 2242 genus 1 2 1 351052 species 2201 0 Alkalilimnicola ehrlichii 949 genus 1765964 2 1 29 Acidihalobacter 0 0 Acidihalobacter prosperus 1 160660 species 920 1525 genus 1335745 3 1 38 Spiribacter 0 1 1335746 512 species 0 Spiribacter salinus 1335757 species 975 1 0 Spiribacter curvatus 0 Ectothiorhodospira 31 1 2 1051 2131 genus 0 2684909 no rank 2100 1 1 1442136 species 2100 0 Ectothiorhodospira sp. BSL-9 2 1 genus 1555 85108 Halorhodospira 0 8 0 Halorhodospira halophila 1053 species 1547 1 1 6 106633 8807 genus 0 Thioalkalivibrio 166 2621013 no rank 1405 1 0 0 Thioalkalivibrio sp. K90mix 1 396595 species 1405 2816 species 1033854 1 Thioalkalivibrio sulfidiphilus 0 0 Thioalkalivibrio paradoxus 1 108010 1266 species 186931 1319 species 1 0 Thioalkalivibrio nitratireducens Thioalkalivibrio versutus 0 1835 species 106634 1 13 Halothiobacillaceae 0 family 1518 255526 4 1 0 Halothiobacillus 31 1 3 109262 genus 1505 1 2636392 846 no rank 0 0 Halothiobacillus sp. LS2 1860122 846 species 1 628 species 927 1 Halothiobacillus neapolitanus 0 3 1 family 1859 1676141 Wenzhouxiangellaceae 0 44 1 2 1676142 1815 genus 0 Wenzhouxiangella 39 1 1776 species 1579979 Wenzhouxiangella marina 0 0 1 family 1282 449719 437504 genus 1282 1 0 Granulosicoccus antarcticus 0 1282 species 437505 1 2 Woeseiaceae 0 774 family 1738654 3 1 2 1 772 genus 1738655 Woeseia 0 18 Woeseia oceani 0 1 species 754 1548547 1 18 1046 14869 family 0 Chromatiaceae 356 0 Marichromatium 37 1 2 85076 2160 genus 37487 2123 species 1 0 Marichromatium purpuratum 2 1 genus 1965 13724 Thiocystis 0 55 species 1910 73141 1 Thiocystis violascens 0 1547 no rank 82569 1 0 1978339 species 1547 1 0 Chromatiaceae bacterium 2141T.STBD.0c.01a 1 2 156885 genus 1591 0 Thioflavicoccus 13 Thioflavicoccus mobilis 0 species 1578 80679 1 2 1 2214 genus 85072 Allochromatium 0 10 Allochromatium vinosum 0 1 species 2204 1049 4 1 1323 genus 1227 Nitrosococcus 0 6 0 Nitrosococcus watsonii 473531 335 species 1 1 382 species 1229 Nitrosococcus oceani 0 0 Nitrosococcus halophilus 133539 600 species 1 2 Candidatus Nitrosoglobus 0 genus 183 1980513 2 1 Candidatus Nitrosoglobus terrae 0 181 species 1630141 1 16 Thiodictyon 0 genus 3530 53392 2 1 0 Candidatus Thiodictyon syntrophicum 1166950 3514 species 1 0 Legionellales 5 1 21 118969 order 7472 26 Legionellaceae 0 6369 family 444 15 1 genus 6045 445 12 1 18 Legionella 0 Legionella pneumophila 0 species 2225 446 1 0 Legionella sainthelensi 28087 426 species 1 0 Legionella fallonii 1 96230 528 species 1 449 species 394 0 Legionella hackeliae 0 Legionella oakridgensis 29423 498 species 1 1 450 476 species 0 Legionella longbeachae 0 Legionella clemsonensis 1867846 species 289 1 0 Legionella spiritensis 1 452 371 species 218 species 2005262 1 Legionella endosymbiont of Polyplax serrata 0 0 Legionella lansingensis 1 45067 species 307 species 295 66969 1 Legionella waltersii 0 1 2 465 298 genus 0 Tatlockia 1 451 297 species 1 0 Tatlockia micdadei Coxiellaceae 0 29 5 1 1098 family 118968 0 1 134284 157 no rank 1 1592897 species 157 0 Coxiella-like endosymbiont 776 912 genus 1 3 1 0 Coxiella 0 219 no rank 2676648 1 1 325775 species 219 0 Coxiella endosymbiont of Amblyomma americanum 1 species 692 777 Coxiella burnetii 0 105556 order 135625 31 1 9 Pasteurellales 0 Pasteurellaceae 0 262 30 1 family 105547 712 1 Basfia 0 genus 775 697331 2 1 774 species 157673 1 [Mannheimia] succiniciproducens 0 86243 genus 724 6 1 21 Haemophilus 0 0 2609962 no rank 2964 1 species 2964 712310 1 Haemophilus sp. oral taxon 036 0 4986 species 249188 1 Haemophilus pittmaniae 0 Haemophilus parainfluenzae 0 1 species 70653 729 1 727 6754 species 0 Haemophilus influenzae species 865 730 1 [Haemophilus] ducreyi 0 genus 2662 75984 4 1 32 Mannheimia 0 0 2645054 no rank 753 1 Mannheimia sp. USDA-ARS-USMARC-1261 0 753 species 1432056 1 1 75985 species 709 0 Mannheimia haemolytica Mannheimia varigena 0 1 species 1168 85404 476528 genus 1035 1 2 6 0 Bibersteinia 47735 species 1029 1 0 Bibersteinia trehalosi 0 Aggregatibacter 17 1 3 416916 genus 6566 714 1857 species 1 0 Aggregatibacter actinomycetemcomitans 1 4692 species 732 Aggregatibacter aphrophilus 0 28 Actinobacillus 0 genus 2738 713 5 1 Actinobacillus suis 0 species 665 716 1 1 67854 species 540 0 Actinobacillus succinogenes species 1003 715 1 Actinobacillus pleuropneumoniae 0 502 species 718 1 Actinobacillus equuli 0 Glaesserella 0 1 2 1 1223 genus 2094023 1 738 1222 species 0 Glaesserella parasuis 1 155493 genus 739 0 Gallibacterium anatis 0 1 species 739 750 0 1 genus 730 214906 species 730 731 1 Histophilus somni 0 0 Pasteurella 1 1 3 745 2574 genus 0 Pasteurella multocida 1 747 species 1948 Pasteurella dagmatis 0 1 species 625 754 106417 order 135614 53 1 888 Xanthomonadales 0 950 Xanthomonadaceae 0 family 87939 32033 38 1 1 9 40323 genus 32097 0 Stenotrophomonas 704 0 196198 no rank 8722 4 0 Stenotrophomonas sp. MYb57 1 1827305 2178 species 2005046 2208 species 1 0 Stenotrophomonas sp. WZN-1 1 1793721 2050 species 0 Stenotrophomonas sp. KCTC 12332 1904944 species 2286 1 0 Stenotrophomonas sp. LM091 2331 species 216778 1 Stenotrophomonas rhizophila 0 0 1 14275 species group 995085 40324 14275 species 1 0 Stenotrophomonas maltophilia 83617 2007 species 1 0 Stenotrophomonas nitritireducens 0 Stenotrophomonas acidaminiphila 1 128780 species 4058 5 0 Luteimonas 83614 genus 1763 1 2 2006110 1758 species 1 0 Luteimonas sp. 100111 146 0 Lysobacter 68 12252 genus 1 5 Lysobacter gummosus 0 1 species 2281 262324 2976 species 69 1 Lysobacter enzymogenes 0 435897 species 3798 1 0 Lysobacter capsici 84531 3051 species 1 0 Lysobacter antibioticus 0 1 2370 genus 783 0 Xylella fastidiosa 2371 783 species 1 83618 6947 genus 1 3 82 0 Pseudoxanthomonas 1 4244 species 314722 Pseudoxanthomonas suwonensis 0 2621 species 415229 1 Pseudoxanthomonas spadix 0 33147 genus 338 17 1 1670 Xanthomonas 0 56458 species 3114 1 0 Xanthomonas sacchari 1 1285 species 366650 Xanthomonas alfalfae 0 339 4094 species 1 0 Xanthomonas campestris Xanthomonas perforans 0 species 1768 442694 1 53413 species 1143 1 0 Xanthomonas axonopodis 1 48664 830 species 0 Xanthomonas fragariae 1334 species 56454 1 Xanthomonas hortorum 0 1 1985254 1348 species 0 Xanthomonas phaseoli 0 Xanthomonas vasicola 1 56459 species 1110 species 1317 456327 1 Xanthomonas euvesicatoria 0 1 347 species 2320 0 Xanthomonas oryzae 56460 species 1696 1 0 Xanthomonas vesicatoria Xanthomonas translucens 0 3612 species 343 1 2 species group 5498 643453 0 Xanthomonas fuscans 0 1 species 1476 366648 0 Xanthomonas citri 1 346 4022 species 0 Xanthomonas albilineans 1 29447 species 1008 0 Rhodanobacteraceae 193 1 14 1775411 17590 family 0 1 2233801 1071 genus 0 Xanthomonadales bacterium D13 1 2021234 species 1071 Luteibacter 0 22 2 1 genus 1584 242605 Luteibacter rhizovicinus 0 1 1562 species 242606 231454 8253 genus 1 4 143 0 Dyella 1 species 2946 445710 Dyella thiooxydans 0 0 Dyella japonica 1 231455 2865 species Dyella jiangningensis 0 species 2299 1379159 1 2126 genus 323413 2 1 34 Dokdonella 0 Dokdonella koreensis 0 2092 species 323415 1 2 1 genus 2815 75309 Rhodanobacter 0 30 species 2785 666685 1 Rhodanobacter denitrificans 0 0 Frateuria 10 1 2 70411 1548 genus Frateuria aurantia 0 species 1538 81475 1 135624 order 63036 1 29 324 0 Aeromonadales 534 0 Aeromonadaceae 84642 62712 family 1 28 3 Tolumonas 0 genus 900 43947 2 1 Tolumonas auensis 0 897 species 43948 1 2 1 3465 genus 347533 Zobellella 0 36 1 347534 species 3429 0 Zobellella denitrificans genus 2795 129577 2 1 23 Oceanimonas 0 2636315 2772 no rank 1 0 Oceanimonas sp. GK1 0 species 2772 511062 1 18 1 genus 54364 642 Aeromonas 0 3430 0 Aeromonas dhakensis 1 196024 species 2406 1 12886 species 644 Aeromonas hydrophila 0 1 948519 2158 species 0 Aeromonas rivipollensis 1 3906 species 645 Aeromonas salmonicida 0 Aeromonas schubertii 0 1 species 2205 652 654 5260 species 1 0 Aeromonas veronii 1 2378 species 558964 Aeromonas aquatica 0 0 Aeromonas caviae 1 648 species 1833 0 no rank 16131 257493 8 0 Aeromonas sp. CA23 2033032 2496 species 1 1 2033033 species 1923 0 Aeromonas sp. CU5 0 Aeromonas sp. ASNIH4 1 1636609 2648 species 1 1636608 1725 species 0 Aeromonas sp. ASNIH3 Aeromonas sp. ASNIH1 0 1 1496 species 1636606 0 Aeromonas sp. ASNIH7 1920107 species 1847 1 0 Aeromonas sp. ASNIH5 1 1758179 species 2341 1 species 1655 1636607 Aeromonas sp. ASNIH2 0 Aeromonas media 0 1771 species 651 1 654 genus 225143 3 1 2 Oceanisphaera 0 species 375 1416627 1 Oceanisphaera profunda 0 0 Oceanisphaera sp. AMac2203 1903694 277 species 1 0 Pseudomonadales 1538 1 128 72274 262869 order 468 family 21238 1 42 52 0 Moraxellaceae Psychrobacter 0 45 11 1 3107 genus 497 1 species 258 330922 Psychrobacter cryohalolentis 0 1 45610 323 species 0 Psychrobacter urativorans 6 1702 no rank 196806 0 246 species 1720344 1 Psychrobacter sp. AntiMn-1 0 1 349106 species 233 0 Psychrobacter sp. PRwf-1 0 Psychrobacter sp. P11G5 1 1699624 390 species 246 species 1028416 1 Psychrobacter sp. DAB_AL43B 0 1 290 species 571800 Psychrobacter sp. G 0 0 Psychrobacter sp. P2G3 1 1699622 species 297 1 261164 species 324 0 Psychrobacter alimentarius 1 334543 455 species 0 Psychrobacter arcticus 12 0 Moraxella 475 genus 2442 1 5 0 Moraxella bovoculi 386891 498 species 1 Moraxella ovis 0 1 species 282 29433 Moraxella osloensis 0 1 species 1238 34062 412 species 480 1 Moraxella catarrhalis 0 genus 15637 469 25 1 171 Acinetobacter 0 909768 5622 species group 5 0 Acinetobacter baumannii 0 species 2160 470 1 0 Acinetobacter calcoaceticus 1 471 764 species 1 species 712 106654 Acinetobacter nosocomialis 0 species 1598 48296 1 Acinetobacter pittii 0 1 1785128 388 species 0 Acinetobacter lactucae 3249 no rank 196816 7 0 0 Acinetobacter sp. SWBY1 2079596 407 species 1 1 species 430 1646498 Acinetobacter sp. TTH0-4 0 Acinetobacter sp. NCu2D-2 0 species 500 1608473 1 species 456 1808001 1 Acinetobacter sp. LoGeW2-3 0 Acinetobacter sp. TGL-Y2 0 496 species 1407071 1 1 472 species 1758189 Acinetobacter sp. ACNIH2 0 488 species 1636603 1 Acinetobacter sp. ACNIH1 0 1 species 308 487316 Acinetobacter soli 0 1 202950 579 species 0 1 62977 strain 579 0 Acinetobacter sp. ADP1 0 Acinetobacter larvae 1789224 394 species 1 0 Acinetobacter indicus 756892 species 709 1 Acinetobacter junii 0 1 569 species 40215 species 702 29430 1 Acinetobacter haemolyticus 0 0 Acinetobacter bereziniae 106648 species 634 1 719 species 40216 1 Acinetobacter radioresistens 0 species 599 1148157 1 Acinetobacter oleivorans 0 Acinetobacter equi 0 species 585 1324350 1 108981 438 species 1 0 Acinetobacter schindleri 1 40214 359 species 0 Acinetobacter johnsonii 240093 family 135621 85 1 1436 Pseudomonadaceae 0 0 1849530 genus 363 1 Oblitimonas alkaliphila 0 1 species 363 1697053 8240 0 Pseudomonas 286 genus 231664 1 80 30 no rank 48292 196821 0 Pseudomonas sp. JY-Q 0 species 1562 1338689 1 Pseudomonas sp. St29 0 1 species 2436 1500687 Pseudomonas sp. CCOS 191 0 1912 species 1649877 1 1 1534110 1490 species 0 Pseudomonas sp. DR 5-09 1 1207075 1251 species 0 Pseudomonas sp. UW4 species 1296 1659194 1 Pseudomonas sp. GR 6-02 0 1 2934 species 1294143 Pseudomonas sp. ATCC 13867 0 1259844 species 1575 1 0 Pseudomonas sp. FGI182 1051 species 1415630 1 Pseudomonas sp. TKP 0 Pseudomonas sp. CC6-YY-74 0 1 species 1707 1930532 species 1350 2018067 1 Pseudomonas sp. FDAARGOS_380 0 Pseudomonas sp. MRSN12121 0 2006 species 1611770 1 species 1317 2067572 1 Pseudomonas sp. NC02 0 1 2083051 species 1147 0 Pseudomonas sp. SWI6 1 species 1528 2083055 Pseudomonas sp. LH1G9 0 1 species 1451 1931241 Pseudomonas sp. S-6-2 0 1898684 1925 species 1 0 Pseudomonas sp. LPH1 2083052 1508 species 1 0 Pseudomonas sp. SWI36 1 2083053 1315 species 0 Pseudomonas sp. SWI44 0 Pseudomonas sp. PONIH3 1636610 1778 species 1 1981174 548 species 1 0 Pseudomonas sp. M30-35 0 Pseudomonas sp. HLS-6 2049589 1202 species 1 2083054 1132 species 1 0 Pseudomonas sp. LG1D9 1 species 2091 1283291 Pseudomonas sp. URMO17WK12:I11 0 1 69328 species 1268 0 Pseudomonas sp. VLB120 0 Pseudomonas sp. StFLB209 1028989 species 2172 1 2069256 species 1515 1 0 Pseudomonas sp. XWY-1 1 species 2277 1500686 Pseudomonas sp. Os17 0 Pseudomonas sp. TCU-HL1 0 2495 species 1856685 1 1 1053 species 1827300 Pseudomonas sp. MYb193 0 0 6 32531 species group 136841 2625 species subgroup 1232139 1 0 0 Pseudomonas furukawaii 1 1149133 species 2625 1 species 2837 53412 Pseudomonas resinovorans 0 0 Pseudomonas citronellolis 53408 6455 species 1 1 8295 species 300 Pseudomonas mendocina 0 0 Pseudomonas aeruginosa 1 287 9630 species 0 Pseudomonas alcaligenes 1 43263 2689 species 1 219572 1083 species 0 Pseudomonas antarctica 1 1788301 species 822 0 Pseudomonas versuta 0 136849 species group 21263 8 0 1 2775504 1158 no rank 1 1206777 species 1158 0 Pseudomonas sp. Lz4W 36746 952 species 1 0 Pseudomonas cichorii 251695 species subgroup 8801 1 0 317 species 8801 1 0 Pseudomonas syringae 1301 species 46257 1 Pseudomonas avellanae 0 1 33069 1654 species 0 Pseudomonas viridiflava Pseudomonas syringae group genomosp. 3 0 species 2563 251701 1 0 species subgroup 4834 251698 2 0 Pseudomonas savastanoi 29438 species 2617 1 47877 species 2217 1 0 Pseudomonas amygdali 0 Pseudomonas alcaliphila 101564 species 1897 1 0 136846 species group 13671 2 1 species subgroup 11636 578833 0 316 11636 species 1 0 Pseudomonas stutzeri 0 Pseudomonas balearica 1 74829 2035 species 1 216142 species 1435 0 Pseudomonas rhizosphaerae 0 Pseudomonas koreensis 1 198620 2363 species 136845 species group 35508 6 0 1 4450 species 78327 Pseudomonas mosselii 0 Pseudomonas putida 0 species 19427 303 1 1 2342 species 47885 Pseudomonas oryzihabitans 0 species 1654 70775 1 Pseudomonas plecoglossicida 0 0 Pseudomonas fulva 47880 2995 species 1 0 Pseudomonas monteilii 76759 species 4640 1 1 species 3244 104087 Pseudomonas frederiksbergensis 0 1 species 3568 930166 Pseudomonas brassicacearum 0 1 157782 2829 species 0 Pseudomonas parafulva Pseudomonas cerasi 0 species 1589 1583341 1 Pseudomonas cremoricolorata 0 1 species 1559 157783 species 1499 237609 1 Pseudomonas alkylphenolica 0 1 1254 species 1853130 Pseudomonas silesiensis 0 species 1176 244566 1 Pseudomonas lurida 0 0 9 species group 29715 136843 16471 species 294 1 Pseudomonas fluorescens 0 0 Pseudomonas azotoformans 47878 species 2233 1 0 Pseudomonas trivialis 1 200450 species 1501 0 Pseudomonas mandelii 1 75612 1755 species Pseudomonas corrugata 0 1125 species 47879 1 Pseudomonas protegens 0 1 species 2714 380021 0 Pseudomonas poae 200451 1419 species 1 species 1108 76758 1 Pseudomonas orientalis 0 76761 species 1389 1 0 Pseudomonas veronii 2 136842 12019 species group 0 0 Pseudomonas fragi 1 296 species 2464 1 9555 species 587753 Pseudomonas chlororaphis 0 1 2483 species 65741 Pseudomonas knackmussii 0 312306 species 1455 1 0 Pseudomonas entomophila Pseudomonas psychrotolerans 0 1 species 2169 237610 3 351 6630 subfamily 0 3 1 genus 6630 352 Azotobacter 0 39 0 Azotobacter vinelandii 1 354 species 2388 1 species 4203 353 Azotobacter chroococcum 0 1 4 1934945 2660 order 0 Immundisolibacterales 90 3 1 2570 family 1934946 Immundisolibacteraceae 0 125 0 Immundisolibacter 13 1 2 1934947 genus 2445 1 1810504 species 2432 0 Immundisolibacter cernigliae 135615 278 order 2 0 2 family 278 868 0 3 0 Dichelobacter 869 genus 278 1 2 Dichelobacter nodosus 0 species 275 870 1 81 Cellvibrionales 0 13758 order 1706369 29 1 25 Halieaceae 0 1673 family 1706372 4 1 3 1 1648 genus 1217416 Halioglobus 0 18 0 Halioglobus japonicus 1 930805 912 species 1 930806 species 718 0 Halioglobus pacificus 4120 family 1706373 5 1 40 Microbulbiferaceae 0 Microbulbifer 0 31 4 1 genus 4080 48073 260552 1394 species 1 0 Microbulbifer agarilyticus Microbulbifer thermotolerans 0 1405 species 252514 1 Microbulbifer aggregans 0 species 1250 1769779 1 Spongiibacteraceae 0 30 7 1 1585 family 1706375 0 Zhongshania 22 1 2 1434050 546 genus 524 species 1470434 1 Zhongshania aliphaticivorans 0 19 0 Spongiibacter 630749 genus 301 1 2 0 2631504 282 no rank 1 species 282 1620392 1 Spongiibacter sp. IMCC21906 0 1084558 708 genus 1 2 20 0 Oceanicoccus 716816 688 species 1 0 Oceanicoccus sagamiensis 0 Cellvibrionaceae 40 1 12 1706371 family 6299 0 genus 610 2036021 1 Agarilytica rhodophyticola 0 1 610 species 1737490 genus 832 2425 2 1 9 Teredinibacter 0 0 Teredinibacter turnerae 1 2426 species 823 2 1 449 genus 316625 Saccharophagus 0 1 1 86304 species 448 0 Saccharophagus degradans 20 Cellvibrio 0 2767 genus 10 4 1 0 Cellvibrio japonicus 155077 994 species 1 2 2624793 1753 no rank 0 Cellvibrio sp. PSBB023 0 species 519 1945512 1 Cellvibrio sp. PSBB006 0 1234 species 1987723 1 Simiduia 0 11 2 1 genus 1601 447467 Simiduia agarivorans 0 1 1590 species 447471 7958 order 135618 13 1 46 Methylococcales 0 Methylococcaceae 0 67 12 1 family 7912 403 genus 1759 413 2 1 40 Methylococcus 0 1 species 1719 414 Methylococcus capsulatus 0 762296 genus 698 1 2 2 0 Methylovulum Methylovulum psychrotolerans 0 species 696 1704499 1 2 1 668 genus 39773 Methylomicrobium 0 1 1 species 667 271065 Methylomicrobium alcaliphilum 0 49 Methylomonas 0 4720 genus 416 5 1 0 1 no rank 1829 2608980 1 1727196 1829 species 0 Methylomonas sp. DH-1 421 730 species 1 0 Methylomonas methanica 0 Methylomonas denitrificans 1538553 species 658 1 0 Methylomonas koyamae 702114 species 1454 1 Oceanospirillales 0 596 67 1 49952 order 135619 224379 1255 family 1 0 1 1255 genus 158481 0 1 158327 1255 species 0 Hahella chejuensis 1 Oleiphilaceae 0 family 722 191033 2 1 0 1 genus 721 141450 Oleiphilus messinensis 0 721 species 141451 1 0 Kangiellaceae 5 1 6 1920240 1710 family 261963 genus 1705 1 5 37 0 Kangiella 0 Kangiella geojedonensis 1 914150 318 species 1 species 521 1561924 Kangiella profundi 0 Kangiella koreensis 0 species 484 261964 1 1144748 345 species 1 0 Kangiella sediminilitoris 1510 family 255527 5 1 3 Saccharospirillaceae 0 2 1 735 genus 230494 Reinekea 0 5 Reinekea forsetii 0 1 species 730 1336806 772 genus 1445504 2 1 11 Gynuella 0 Gynuella sunshinyii 0 species 761 1445505 1 13 1 5475 family 135620 Oceanospirillaceae 0 115 1 2 188907 genus 516 0 Oleispira 2 Oleispira antarctica 0 species 514 188908 1 1 4 28253 1483 genus 0 Marinomonas 10 0 no rank 546 196814 1 1 400668 species 546 0 Marinomonas sp. MWYL1 0 Marinomonas mediterranea 119864 552 species 1 Marinomonas posidonica 0 species 375 936476 1 Marinobacterium 0 64 2 1 2009 genus 48075 Marinobacterium aestuarii 0 1945 species 1821621 1 1537406 1010 genus 1 2 16 0 Bacterioplanes 1 species 994 1249553 Bacterioplanes sanyensis 0 0 Thalassolituus 2 1 2 187492 genus 342 1 187493 species 340 0 Thalassolituus oleivorans 0 Halomonadaceae 376 1 31 28256 30112 family genus 2870 504090 3 1 14 Kushneria 0 0 Kushneria marisflavi 157779 1370 species 1 species 1486 698828 1 Kushneria konosiri 0 376488 genus 1678 1 2 154 0 Halotalea 1 species 1524 376489 Halotalea alkalilenta 0 404432 genus 2078 1 2 73 0 Salinicola Salinicola tamaricis 0 1 species 2005 1771309 0 4 114403 453 no rank 1495768 genus 283 1 2 1 0 Candidatus Evansia Candidatus Evansia muelleri 0 1 282 species 1495769 1 235572 129 genus 0 91844 species 129 1 0 Candidatus Portiera aleyrodidarum 41 genus 114185 1 0 Candidatus Carsonella ruddii 0 species 41 114186 1 1 2 42054 genus 1272 0 Chromohalobacter 37 0 Chromohalobacter salexigens 158080 species 1235 1 14 0 Cobetia 204286 genus 2634 1 2 0 Cobetia marina 28258 2620 species 1 genus 18751 2745 15 1 305 Halomonas 0 1 475662 species 2567 0 Halomonas beimenensis 0 Halomonas chromatireducens 1 507626 species 1567 1 213554 453 species 0 Halomonas campaniensis Halomonas aestuarii 0 species 2458 1897729 1 115561 species 1503 1 0 Halomonas hydrothermalis 0 9049 no rank 2609666 8 1 species 2532 1883416 Halomonas sp. 1513 0 Halomonas sp. KO116 0 species 820 1504981 1 Halomonas sp. SF2003 0 1849 species 2136172 1 625 species 1971364 1 Halomonas sp. GT 0 0 Halomonas sp. GFAJ-1 1 1118153 species 462 1 species 1113 1610576 Halomonas sp. R57-5 0 1962264 824 species 1 0 Halomonas sp. 'Soap Lake #7' 0 Halomonas sp. 'Soap Lake #6' 1 1949203 species 824 0 Halomonas huangheensis 1 1178482 849 species 67 Alcanivoracaceae 0 8572 family 224372 8 1 0 1 1360 genus 2025617 1917421 1360 species 1 0 Ketobacter alkanivorans 122 0 Alcanivorax 59753 7145 genus 1 6 285091 2092 species 1 0 Alcanivorax dieselolei 1306787 2244 species 1 0 Alcanivorax pacificus Alcanivorax xenomutans 0 1 species 1526 1094342 2638842 602 no rank 1 0 Alcanivorax sp. NBRC 101098 0 602 species 1113728 1 59754 559 species 1 0 Alcanivorax borkumensis Nevskiales 0 11 4 1 order 961 1775403 1 13 family 568386 Sinobacteraceae 0 0 2689614 937 family 2 469322 genus 937 1 2 2 0 Steroidobacter 0 Steroidobacter denitrificans 1 465721 species 935 6 1 order 3310 1692040 Acidiferrobacterales 0 55 5 1 family 3255 1692041 Acidiferrobacteraceae 0 133 1 2 1692042 genus 1273 0 Sulfurifustis 59 Sulfurifustis variabilis 0 species 1214 1675686 1 31 Sulfuricaulis 0 1849 genus 1744881 2 1 Sulfuricaulis limicola 0 1 1818 species 1620215 3949 no rank 33811 2 0 0 endosymbiont of unidentified scaly snail isolate Monju 1248727 1797 species 1 1 83406 species 2152 0 gamma proteobacterium HdN1 17 0 Thiotrichales 72273 order 15430 1 32 15 Piscirickettsiaceae 0 family 3642 135616 13 1 0 28884 222 genus 1 1 222 species 39765 Hydrogenovibrio crunogenus 0 0 Cycloclasticus 12 1 4 34067 1093 genus Cycloclasticus zancles 0 1 species 324 1329899 757 no rank 2621467 2 0 1 728003 383 species 0 Cycloclasticus sp. PY97N 385025 species 374 1 0 Cycloclasticus sp. P1 genus 796 1237 1 0 Piscirickettsia salmonis 0 species 796 1238 1 1 3 40222 988 genus 0 Methylophaga 9 Methylophaga nitratireducenticrescens 0 1 582 species 754476 species 397 754477 1 Methylophaga frappieri 0 Thiomicrospira 0 1 3 1 528 genus 933 1 147268 295 species 0 Thiomicrospira cyclica 92245 species 232 1 0 Thiomicrospira aerophila 6 0 Thiotrichaceae 135617 656 family 1 3 0 1021 genus 393 1 Beggiatoa leptomitoformis 0 1 species 393 288004 1 40751 genus 257 0 1 species 257 40754 Thioploca ingrica 0 11115 family 34064 15 1 28 Francisellaceae 0 Francisella 0 148 12 1 genus 10557 262 0 Francisella tularensis 263 2477 species 1 Francisella hispaniensis 0 751 species 622488 1 1 1260 species 657445 Francisella noatunensis 0 2 946 no rank 2610885 0 0 Francisella sp. FSC1006 1547445 470 species 1 0 Francisella sp. MA067296 1 475375 476 species Francisella philomiragia 0 species 1467 28110 1 573570 species 1185 1 0 Francisella sp. TX077310 1 573569 species 647 0 Francisella sp. TX077308 species 759 1542390 1 Francisella sp. CA97-1460 0 Francisella persica 0 species 308 954 1 609 species 549298 1 Francisella halioticida 0 1869285 530 genus 1 2 6 0 Allofrancisella 594679 524 species 1 0 Allofrancisella guangzhouensis 580370 class 1443 1 6 2 0 Zetaproteobacteria 5 1 order 1441 580371 Mariprofundales 0 10 4 1 family 1431 580372 Mariprofundaceae 0 10 2 Mariprofundus 0 1421 genus 377315 3 1 666 species 1921087 1 Mariprofundus ferrinatatus 0 species 753 1921086 1 Mariprofundus aestuarium 0 Oligoflexia 0 1 11 1 class 3810 1553900 1 5 2024979 order 1534 0 Bacteriovoracales 1 2 799 family 263369 0 0 Bacteriovorax 1 1 2 146784 799 genus 0 Bacteriovorax stolpii 1 960 species 798 2 family 734 1652132 0 Halobacteriovorax 0 1 2 1 734 genus 1652133 1 733 species 97084 Halobacteriovorax marinus 0 order 2275 213481 5 1 7 Bdellovibrionales 0 family 2268 213483 4 1 6 Bdellovibrionaceae 0 7 0 Bdellovibrio 958 2262 genus 1 3 1 species 303 453816 Bdellovibrio exovorus 0 Bdellovibrio bacteriovorus 0 species 1952 959 1 1 349 28216 591026 class 0 Betaproteobacteria 1219 5673 Burkholderiales 0 486125 order 80840 233 1 119060 family 167859 1 84 1309 0 Burkholderiaceae 373 Paraburkholderia 0 18861 genus 1822464 12 1 Paraburkholderia xenovorans 0 species 1671 36873 1 species 1762 134537 1 Paraburkholderia fungorum 0 1 1299 no rank 2615204 0 0 Paraburkholderia sp. SOS3 1 1926494 species 1299 311230 species 1498 1 0 Paraburkholderia terrae Paraburkholderia phytofirmans 0 1 1482 species 261302 1 948107 species 1499 0 Paraburkholderia sprentiae 0 Paraburkholderia phymatum 1 148447 species 1610 1 169430 1654 species 0 Paraburkholderia hospita 1 252970 species 1391 0 Paraburkholderia phenoliruptrix 0 Paraburkholderia caribensis 1 75105 species 2371 0 Paraburkholderia aromaticivorans 2026199 2251 species 1 genus 12872 93217 10 1 283 Pandoraea 0 species 1484 93221 1 Pandoraea pulmonicola 0 1 1399 species 656178 Pandoraea vervacti 0 Pandoraea apista 0 species 1307 93218 1 1424 species 445709 1 Pandoraea thiooxydans 0 0 Pandoraea oxalativorans 573737 1387 species 1 0 Pandoraea faecigallinarum 1 656179 1226 species species 1362 93219 1 Pandoraea norimbergensis 0 Pandoraea sputorum 0 1 species 1234 93222 1 93220 species 1766 0 Pandoraea pnomenusa 2571159 genus 629 1 0 Paraburkholderia rhizoxinica 0 629 species 412963 1 48736 20701 genus 1 5 419 0 Ralstonia 0 Ralstonia mannitolilytica 105219 3102 species 1 1 329 4413 species 0 Ralstonia pickettii Ralstonia insidiosa 0 1 species 2653 190721 Ralstonia solanacearum 0 species 10114 305 1 987 0 Cupriavidus 106589 28739 genus 1 9 82541 species 2464 1 0 Cupriavidus gilardii 0 no rank 7889 2640874 2 0 Cupriavidus sp. USMAHM13 1389192 species 3869 1 0 Cupriavidus sp. USMAA2-4 1 876364 species 4020 Cupriavidus basilensis 0 1 species 2971 68895 species 4082 367825 1 Cupriavidus sp. USMAA1020 0 1 248026 2345 species 0 Cupriavidus pinatubonensis species 5889 106590 1 Cupriavidus necator 0 0 Cupriavidus metallidurans 1 119219 species 2112 2 Polynucleobacter 0 612 genus 44013 4 1 1 species 269 1835254 Polynucleobacter duraquae 0 576610 species 151 1 0 Polynucleobacter necessarius Polynucleobacter asymbioticus 0 species 190 576611 1 0 1827195 1705 genus 1 1705 species 758793 1 Burkholderia sp. RPE64 0 Burkholderia 0 3945 41 1 82431 genus 32008 1 species 4026 337 Burkholderia glumae 0 0 Burkholderia gladioli 1 28095 4786 species 7 111527 species group 11489 0 1637841 species 1022 1 0 Burkholderia sp. MSMB0852 species 939 1637831 1 Burkholderia sp. MSMB617WGS 0 1 species 3211 28450 Burkholderia pseudomallei 0 57975 species 2550 1 0 Burkholderia thailandensis Burkholderia sp. MSMB0266 0 1080 species 1637837 1 species 925 13373 1 Burkholderia mallei 0 0 Burkholderia oklahomensis 342113 species 1762 1 11 no rank 14275 2613784 0 Burkholderia sp. PAMC 26561 0 species 1027 1795043 1 0 Burkholderia sp. Bp5365 1740162 species 979 1 0 Burkholderia sp. Bp7605 1740163 1369 species 1 0 Burkholderia sp. KJ006 1 416344 958 species 0 Burkholderia sp. PAMC 28687 1795874 916 species 1 Burkholderia sp. HB1 0 1 1538 species 1678678 Burkholderia sp. CCGE1003 0 1 1310 species 640512 1 species 1979 1097668 Burkholderia sp. YI23 0 0 Burkholderia sp. RPE67 758796 1972 species 1 0 Burkholderia sp. 2002721687 1 1468409 1036 species 0 Burkholderia sp. CCGE1001 1 640510 1191 species 1 41899 2489 species 0 Burkholderia plantarii 87882 species group 41421 19 0 Burkholderia vietnamiensis 0 1649 species 60552 1 species 1088 60550 1 Burkholderia pyrrocinia 0 0 Burkholderia seminalis 1 488731 species 1141 1 species 7033 95486 Burkholderia cenocepacia 0 Burkholderia cepacia 0 1 6843 species 292 0 Burkholderia contaminans 1 488447 species 1238 1196 species 488446 1 Burkholderia latens 0 1 1503055 886 species 0 Burkholderia territorii 0 Burkholderia pseudomultivorans 1207504 species 1690 1 0 Burkholderia ubonensis 101571 3996 species 1 1309 species 265293 1 [Pseudomonas] mesoacidophila 0 1 species 1534 152480 Burkholderia ambifaria 0 Burkholderia metallica 0 species 999 488729 1 1 3372 species 87883 Burkholderia multivorans 0 0 Burkholderia diffusa 1 488732 species 1055 species 1899 95485 1 Burkholderia stabilis 0 Burkholderia lata 0 1 species 2123 482957 1 152500 species 1034 0 Burkholderia dolosa Burkholderia stagnalis 0 species 1336 1503054 1 700 Oxalobacteraceae 0 52039 family 75682 29 1 162 Collimonas 0 7730 genus 202907 4 1 0 Collimonas arenae 279058 species 2722 1 0 Collimonas pratensis 1 279113 2325 species Collimonas fungivorans 0 2521 species 158899 1 434 Massilia 0 genus 16701 149698 6 1 2609279 no rank 6780 2 0 species 3674 1678028 1 Massilia sp. NR 4-1 0 1 1707785 3106 species 0 Massilia sp. WG5 0 Massilia putida 1 1141883 species 3044 1 3996 species 2072590 Massilia sp. ZMN-3 0 1 2045208 2447 species 0 Massilia sp. B2 29580 genus 12506 1 7 196 0 Janthinobacterium 55508 species 2136 1 0 Janthinobacterium agaricidamnosum 0 7216 no rank 2610881 4 375286 species 897 1 0 Janthinobacterium sp. Marseille 0 Janthinobacterium sp. B9-8 1236179 species 710 1 0 Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 species 2728 1 0 Janthinobacterium sp. LM6 1938606 species 2881 1 Janthinobacterium svalbardensis 0 species 2958 368607 1 Oxalobacter 0 7 2 1 954 genus 846 1 847 947 species 0 Oxalobacter formigenes 0 Herminiimonas 30 1 3 303379 genus 1096 1 1809410 474 species 0 Herminiimonas arsenitoxidans 592 species 204773 1 Herminiimonas arsenicoxydans 0 6 1 12352 genus 963 Herbaspirillum 0 386 Herbaspirillum frisingense 0 3490 species 92645 1 1 no rank 1199 2624150 0 1 2025949 species 1199 0 Herbaspirillum sp. meg3 1 964 species 3022 0 Herbaspirillum seropedicae 80842 species 2587 1 0 Herbaspirillum rubrisubalbicans 341045 species 1668 1 0 Herbaspirillum hiltneri Comamonadaceae 0 2362 58 1 130215 family 80864 3336 genus 2678886 1 0 Melaminivora sp. SC2-7 0 species 3336 2116657 1 2 2490452 genus 3456 0 0 Comamonadaceae bacterium B1 1458426 species 1904 1 Comamonadaceae bacterium A1 0 1 species 1552 1458425 0 Comamonas 72 1 4 283 genus 11801 285 species 5084 1 0 Comamonas testosteroni 1082851 3217 species 1 0 Comamonas serinivorans Comamonas kerstersii 0 3428 species 225992 1 1 2 1649468 3610 genus 0 Melaminivora 53 0 1 no rank 3557 2641902 Melaminivora sp. SC2-9 0 1 species 3557 2109913 0 1436289 941 genus 1 0 Candidatus Symbiobacter mobilis 1 1436290 941 species Polaromonas 0 44 3 1 genus 4788 52972 1 2638319 no rank 2059 0 1 2059 species 296591 Polaromonas sp. JS666 0 216465 2685 species 1 0 Polaromonas naphthalenivorans genus 2085 665874 3 1 14 Limnohabitans 0 0 2071 no rank 2626134 2 1 1678128 species 1440 0 Limnohabitans sp. 63ED37-2 1 1678129 species 631 0 Limnohabitans sp. 103DPR2 5 1 9383 genus 28065 Rhodoferax 0 49 species 2165 1484693 1 Rhodoferax saidenbachensis 0 Rhodoferax antarcticus 0 1 species 2506 81479 Rhodoferax koreense 0 3002 species 1842727 1 192843 1661 species 1 0 Rhodoferax ferrireducens 7782 genus 47420 4 1 97 Hydrogenophaga 0 1 species 1828 1763535 Hydrogenophaga crassostreae 0 0 2 2610897 5857 no rank Hydrogenophaga sp. PBC 0 1 species 3496 795665 1 1842537 species 2361 0 Hydrogenophaga sp. RAC07 0 Diaphorobacter 5 1 2 238749 2527 genus 0 Diaphorobacter polyhydroxybutyrativorans 1 1546149 2522 species genus 17943 80865 5 1 700 Delftia 0 0 Delftia acidovorans 80866 4124 species 1 Delftia tsuruhatensis 0 4420 species 180282 1 0 2 no rank 8699 2613839 1 4714 species 742013 Delftia sp. Cs1-4 0 1 1920191 species 3985 0 Delftia sp. HK171 Ramlibacter 0 81 2 1 6625 genus 174951 94132 species 6544 1 0 Ramlibacter tataouinensis 3 1 5451 genus 219181 Ottowia 0 72 1 2645081 2272 no rank 0 2272 species 1658672 1 Ottowia sp. oral taxon 894 0 1 3107 species 2109914 Ottowia sp. KADR8-3 0 Verminephrobacter 0 14 2 1 genus 2286 364316 1 364317 2272 species 0 Verminephrobacter eiseniae 352450 1933 genus 1 2 31 0 Simplicispira Simplicispira sp. SC1-8 0 1 species 1902 2109915 930 0 Acidovorax 12916 22553 genus 1 9 0 Acidovorax sp. NA3 553814 species 2229 1 4 12046 no rank 2684926 0 0 Acidovorax sp. JS42 1 232721 2588 species 0 Acidovorax sp. T1 1858609 species 3110 1 1 species 3272 358220 Acidovorax sp. KKS102 0 Acidovorax sp. RAC01 0 1 3076 species 1842533 1 80867 2504 species 0 Acidovorax avenae 0 Acidovorax citrulli 80869 species 2466 1 1 721785 species 2378 0 Acidovorax ebreus 28 Alicycliphilus 0 genus 4367 201096 2 1 0 Alicycliphilus denitrificans 179636 species 4339 1 34072 genus 16986 1 5 430 0 Variovorax 5661 no rank 663243 2 0 1795631 1532 species 1 0 Variovorax sp. PAMC 28711 Variovorax sp. PMC12 0 species 4129 2126319 1 34073 7592 species 1 0 Variovorax paradoxus 436515 species 3303 1 0 Variovorax boronicumulans 0 2877 no rank 80841 2 0 Burkholderiales bacterium GJ-E10 1469502 971 species 1 1834205 1906 species 1 0 Burkholderiales bacterium YL45 family 97703 506 42 1 721 Alcaligenaceae 0 Bordetella 0 1593 17 1 genus 44584 517 1 3256 species 1331258 Bordetella pseudohinzii 0 0 Bordetella trematum 123899 2583 species 1 Bordetella holmesii 0 1 species 1150 35814 1 463024 species 2973 0 Bordetella genomosp. 6 94624 2336 species 1 0 Bordetella petrii 0 Bordetella parapertussis 519 species 3218 1 Bordetella genomosp. 13 0 1 2797 species 463040 2966 no rank 2630031 1 0 Bordetella sp. H567 0 1 2966 species 1697043 1 species 5307 518 Bordetella bronchiseptica 0 0 Bordetella pertussis 1 520 2302 species 1 463025 species 3193 0 Bordetella bronchialis 1 1416806 species 2702 0 Bordetella genomosp. 8 Bordetella flabilis 0 1 2077 species 463014 1 103855 2854 species 0 Bordetella hinzii Bordetella genomosp. 9 0 species 2019 1416803 1 1258 species 521 1 Bordetella avium 0 0 438 genus 1100891 1 Paenalcaligenes hominis 0 438 species 643674 1 6 1 genus 37486 222 Achromobacter 0 1128 1 217204 3025 species 0 Achromobacter insolitus 0 2626865 no rank 4387 1 0 Achromobacter sp. AONIH1 1758194 species 4387 1 0 Achromobacter xylosoxidans 1 85698 species 14800 Achromobacter spanius 0 6256 species 217203 1 species 7890 32002 1 Achromobacter denitrificans 0 1 2 305976 genus 1304 0 Pusillimonas 3 1 no rank 1301 2640016 0 0 Pusillimonas sp. T7-7 1 1007105 species 1301 Oligella 0 17 2 1 genus 414 90243 90245 397 species 1 0 Oligella urethralis genus 453 29574 3 1 3 Taylorella 0 0 Taylorella equigenitalis 1 29575 268 species 0 Taylorella asinigenitalis 1 84590 species 182 290425 1865 genus 1 3 27 0 Advenella Advenella mimigardefordensis 0 1044 species 302406 1 310575 794 species 1 0 Advenella kashmirensis 2 1 genus 3960 1921582 Orrella 0 105 1851544 3855 species 1 0 Orrella dioscoreae 2 1 3390 genus 359336 Castellaniella 0 127 0 Castellaniella defragrans 1 75697 3263 species 0 1472344 genus 330 1 Basilea psittacipulmonis 0 1 330 species 1472345 Alcaligenes 0 10 2 1 2758 genus 507 1 2748 species 511 Alcaligenes faecalis 0 224471 29759 no rank 17 0 162 0 Mitsuaria 65047 3681 genus 1 2 1 3519 no rank 2648776 0 0 Mitsuaria sp. 7 1658665 3519 species 1 1 2 316612 2507 genus 0 Methylibium 68 1 105560 2439 species 0 Methylibium petroleiphilum 187 0 Rubrivivax 28067 genus 4206 1 2 Rubrivivax gelatinosus 0 1 4019 species 28068 2 1 4149 genus 93681 Roseateles 0 84 76731 species 4065 1 0 Roseateles depolymerans 54 Thiomonas 0 genus 3269 32012 2 1 926 species 3215 1 0 Thiomonas intermedia [Polyangium] brachysporum 0 2472 species 413882 1 148 0 Rhizobacter 212743 3686 genus 1 2 1 946333 species 3538 0 Rhizobacter gummiphilus 1 2 318147 genus 3006 0 Paucibacter 76 0 2930 no rank 2642959 1 species 2930 1768242 1 Paucibacter sp. KCTC 42545 0 2 1 2783 genus 88 Leptothrix 0 106 1 species 2677 34029 Leptothrix cholodnii 0 0 33809 1928 no rank 2 299 species 543913 1 beta proteobacterium CB 0 1 1629 species 1904640 Betaproteobacteria bacterium GR16-43 0 no rank 3771 119066 12 0 4 Candidatus Profftella 0 360 genus 1381133 2 1 Candidatus Profftella armatura 0 1 356 species 669502 1 genus 36 189384 0 36 species 189385 1 Candidatus Tremblaya princeps 0 10 0 Kinetoplastibacterium 33055 genus 1700 1 6 Kinetoplastibacterium blastocrithidii 0 1 200 species 233181 Candidatus Kinetoplastibacterium oncopeltii 0 197 species 994696 1 Candidatus Kinetoplastibacterium crithidii 0 401 species 33056 1 Candidatus Kinetoplastibacterium galatii 0 1 324 species 994695 994692 species 568 1 0 Candidatus Kinetoplastibacterium desouzaii 2 1 genus 1655 327159 Candidatus Accumulibacter 0 28 0 Candidatus Accumulibacter phosphatis 327160 1627 species 1 genus 20 1301080 1 0 1 20 species 1160784 Candidatus Nasuia deltocephalinicola 0 705 0 Neisseriales 206351 46486 order 1 35 1 21 481 22739 family 0 Neisseriaceae 206 Vitreoscilla 0 42 3 1 2073 genus 59 0 2627922 194 no rank 1 0 Vitreoscilla sp. C1 1 96942 species 194 1837 species 63 1 Vitreoscilla filiformis 0 482 genus 17327 1 12 312 0 Neisseria Neisseria sicca 0 1265 species 490 1 Neisseria elongata 0 species 1169 495 1 0 2 2623750 no rank 3576 Neisseria sp. 10022 0 1 796 species 1853276 Neisseria sp. KEM232 0 2780 species 655307 1 0 Neisseria zoodegmatis 326523 species 1114 1 1 488 species 1384 0 Neisseria mucosa 1 species 1710 486 Neisseria lactamica 0 1 species 1313 1853278 Neisseria sp. 10023 0 Neisseria weaveri 0 926 species 28091 1 Neisseria meningitidis 0 1 species 3480 487 0 Neisseria gonorrhoeae 485 1078 species 1 0 421605 no rank 326 1 1 2052837 species 326 0 Neisseriaceae bacterium DSM 100970 1 71 genus 452 0 1 72 species 452 0 Simonsiella muelleri 538 genus 1709 1 2 18 0 Eikenella 539 species 1691 1 0 Eikenella corrodens 646 genus 1193515 1 0 Snodgrassella alvi 0 1 646 species 1196083 271 0 Chromobacteriaceae 1499392 23042 family 1 13 2 1 2432 genus 187 Aquaspirillum 0 76 1 2356 no rank 2620219 0 Aquaspirillum sp. LM1 0 1 2356 species 1938604 1765 genus 885864 2 1 38 Jeongeupia 0 0 1 no rank 1727 2619593 species 1727 1906741 1 Jeongeupia sp. USM3 0 0 Laribacter 82 1 2 168470 2674 genus 1 species 2592 168471 Laribacter hongkongensis 0 4 90153 12932 no rank 0 535 genus 12932 1 4 169 0 Chromobacterium 1108595 5121 species 1 0 Chromobacterium vaccinii 1 no rank 3720 2641838 0 1 2059672 3720 species 0 Chromobacterium sp. ATCC 53434 0 Chromobacterium violaceum 536 species 3922 1 21 0 Pseudogulbenkiania 568394 genus 2968 1 2 2642558 no rank 2947 1 0 748280 2947 species 1 0 Pseudogulbenkiania sp. NH8B 474 0 Rhodocyclales 206389 30766 order 1 22 family 6789 75787 6 1 123 Rhodocyclaceae 0 Aromatoleum 0 76 2 1 genus 1429 551759 1 1353 species 551760 Aromatoleum aromaticum 0 127 Azospira 0 3561 genus 146937 2 1 0 Azospira oryzae 146939 3434 species 1 1 no rank 1676 75788 0 Rhodocyclaceae bacterium 0 1 1676 species 1898103 0 Zoogloeaceae 670 1 12 2008794 22197 family 13060 genus 33057 6 1 390 Thauera 0 Thauera humireducens 0 1 2762 species 1134435 1 species 1605 59405 Thauera aromatica 0 1 species 1963 96773 Thauera chlorobenzoica 0 2609274 6340 no rank 2 0 1 85643 species 3038 0 Thauera sp. MZ1T Thauera sp. K11 0 species 3302 2005884 1 Azoarcus 0 222 5 1 genus 8467 12960 species 1903 2067960 1 Azoarcus sp. SY39 0 0 Azoarcus olearius 1 418699 1946 species 2 2629479 no rank 4396 0 Azoarcus sp. KH32C 0 1 2223 species 748247 species 2173 198107 1 Azoarcus sp. CIB 0 40 0 Azonexaceae 2008795 family 1306 1 3 40 0 Dechloromonas 73029 1266 genus 1 2 Dechloromonas aromatica 0 1226 species 259537 1 order 20731 32003 44 1 156 Nitrosomonadales 0 43 0 Methylophilaceae 32011 family 4614 1 14 3 1 490 genus 1679002 Candidatus Methylopumilus 0 1 1 species 224 1581557 Candidatus Methylopumilus planktonicus 0 0 Candidatus Methylopumilus turicensis 1581680 species 265 1 Methylobacillus 0 7 2 1 genus 1102 404 0 Methylobacillus flagellatus 405 1095 species 1 2 1 362 genus 16 Methylophilus 0 1 0 1 2630143 361 no rank 361 species 1662285 1 Methylophilus sp. TWE2 0 26 0 Methylotenera 359407 574 genus 1 3 1 species 282 1055487 Methylotenera versatilis 0 0 Methylotenera mobilis 1 359408 species 266 Methylovorus 0 62 3 1 2043 genus 81682 0 1 2634027 1002 no rank 887061 1002 species 1 0 Methylovorus sp. MP688 Methylovorus glucosotrophus 0 species 979 266009 1 94 Gallionellaceae 0 2716 family 90627 5 1 2 1 genus 944 96 Gallionella 0 27 Gallionella capsiferriformans 0 1 species 917 370405 16 0 Sideroxydans 314343 1678 genus 1 2 1 63745 species 1662 0 Sideroxydans lithotrophicus 2772226 1896 family 4 0 genus 1045 935200 2 1 54 Sulfuricella 0 649841 species 991 1 0 Sulfuricella denitrificans 1 2 1778653 genus 851 0 Sulfuriferula 43 2637784 808 no rank 1 0 1 808 species 1985873 Sulfuriferula sp. AH1 0 45 0 Nitrosomonadaceae 206379 5588 family 1 12 20 0 Nitrosomonas 914 genus 3300 1 7 0 no rank 1129 2609265 2 Nitrosomonas sp. AL212 0 696 species 153948 1 0 Nitrosomonas sp. Is79A3 1 261292 species 433 371 species 916 1 Nitrosomonas eutropha 0 0 Nitrosomonas communis 1 44574 species 364 44577 537 species 1 0 Nitrosomonas ureae 0 Nitrosomonas europaea 915 879 species 1 1 4 35798 2243 genus 0 Nitrosospira 9 1 1231 406 species 0 Nitrosospira multiformis 0 Nitrosospira lacus 1 1288494 614 species Nitrosospira briensis 0 1 species 1214 35799 0 Thiobacillaceae 59 1 3 2008790 family 1551 1492 genus 919 2 1 27 Thiobacillus 0 36861 1465 species 1 0 Thiobacillus denitrificans 76 0 Sterolibacteriaceae 2008793 family 4210 1 5 2 1 1985 genus 1054211 Sulfuritalea 0 80 1905 species 748811 1 Sulfuritalea hydrogenivorans 0 38 Methyloversatilis 0 2149 genus 378210 2 1 0 2111 no rank 2639971 1 Methyloversatilis sp. RAC08 0 1 2111 species 1842540 Alphaproteobacteria 0 2420 555 1 class 645868 28211 0 8 82117 no rank 6496 0 2 clade 897 62654 genus 897 767891 2 1 1 Candidatus Puniceispirillum 0 Candidatus Puniceispirillum marinum 0 species 896 767892 1 18 Micavibrio 0 1308 genus 213485 2 1 349221 species 1290 1 0 Micavibrio aeruginosavorus 82 0 Phreatobacter 1632780 2313 genus 1 2 Phreatobacter sp. S-12 0 2231 species 1868589 1 Polymorphum 0 7 2 1 genus 1978 991903 991904 species 1971 1 0 Polymorphum gilvum 1 51 766 order 11104 0 Rickettsiales 10 17 0 Candidatus Midichloriaceae 1328881 family 266 1 2 0 1 411566 249 genus Candidatus Midichloria mitochondrii 0 1 249 species 234827 1 1699067 687 no rank 0 species 687 1528098 1 Rickettsiales bacterium Ac37b 0 942 4626 family 1 21 3 0 Anaplasmataceae 0 3 768 301 genus 1 769 species 136 0 Anaplasma centrale 1 770 71 species 0 Anaplasma marginale 106179 94 species group 1 0 0 Anaplasma phagocytophilum 948 species 94 1 0 8 952 1840 tribe genus 1840 953 8 1 121 Wolbachia 0 2640676 1719 no rank 7 0 species 127 77551 1 Wolbachia endosymbiont of Onchocerca volvulus 0 Wolbachia endosymbiont of Onchocerca ochengi 0 1 97 species 100901 Wolbachia endosymbiont of Drosophila simulans 0 species 555 77038 1 Wolbachia sp. wRi 0 species 207 66084 1 Wolbachia endosymbiont of Cimex lectularius 0 238 species 246273 1 Wolbachia endosymbiont of Drosophila melanogaster 0 1 species 225 163164 Wolbachia endosymbiont of Brugia malayi 0 270 species 80849 1 0 370 genus 33993 3 0 Neorickettsia risticii 1 950 species 131 0 Neorickettsia sennetsu 1 951 104 species 0 Neorickettsia helminthoeca 33994 species 135 1 6 1 genus 2112 943 Ehrlichia 0 26 0 no rank 291 106181 1 0 Ehrlichia sp. HF 391036 species 291 1 4 1795 species group 106178 0 1 945 412 species 0 Ehrlichia chaffeensis 944 641 species 1 0 Ehrlichia canis 0 Ehrlichia ruminantium 1 779 species 504 0 Ehrlichia muris 35795 species 238 1 1 26 775 5515 family 0 Rickettsiaceae 32 0 1 genus 274 2115980 Candidatus Phycorickettsia trachydisci 0 1 species 274 2115978 0 24 33988 tribe 5209 0 Rickettsia 527 1 23 780 genus 4731 2 904 species group 1129742 0 0 Rickettsia bellii 33990 496 species 1 408 species 788 1 Rickettsia canadensis 0 2 species group 726 114292 0 351 species 785 1 Rickettsia typhi 0 Rickettsia prowazekii 0 1 375 species 782 1 360 no rank 114295 0 0 Rickettsia endosymbiont of Bemisia tabaci 1 337479 360 species 0 17 2214 species group 114277 1105106 species 22 1 0 Rickettsia philipii 1 47 species 33992 Rickettsia rhipicephali 0 43 species 783 1 Rickettsia rickettsii 0 33991 35 species 1 0 Rickettsia montanensis 33989 species 117 1 0 Rickettsia amblyommatis Rickettsia akari 0 443 species 786 1 Rickettsia felis 0 species 326 42862 1 1 species 151 109232 Rickettsia monacensis 0 1 226665 148 species 0 Rickettsia heilongjiangensis 0 Rickettsia africae 1 35788 24 species 0 Rickettsia peacockii 1 47589 species 132 Rickettsia conorii 0 1 species 27 781 0 Rickettsia australis 1 787 375 species 0 Rickettsia slovaca 35794 11 species 1 0 Rickettsia parkeri 35792 species 17 1 0 Rickettsia japonica 35790 species 202 1 1 35791 94 species 0 Rickettsia massiliae 0 1 genus 478 69474 0 Orientia tsutsugamushi 784 species 478 1 Holosporales 0 4 5 1 1067 order 1921002 0 1 505 family 44746 0 1 204454 no rank 505 0 endosymbiont of Acanthamoeba sp. UWC8 86106 505 species 1 2 1 family 253 2100208 Caedimonadaceae 0 7 0 1509243 genus 246 1 0 Candidatus Nucleicultrix amoebiphila 1509244 246 species 1 0 1 1777752 305 family 0 305 genus 1521255 1 0 Candidatus Paracaedibacter acanthamoebae 1 91604 species 305 0 Rhizobiales 2545 1 209 356 265287 order 3238 family 31993 6 1 13 Methylocystaceae 0 0 Methylocystis 41 1 3 133 genus 1734 2625913 no rank 915 1 0 1 187303 species 915 0 Methylocystis sp. SC2 778 species 655015 1 Methylocystis bryophila 0 2 1 1491 genus 425 Methylosinus 0 40 Methylosinus trichosporium 0 species 1451 426 1 0 Rhizobiaceae 864 1 52 82115 family 85230 1537 genus 34019 6 1 6 Liberibacter 0 0 Candidatus Liberibacter americanus 1 309868 337 species 306 species 1273132 1 Liberibacter crescens 0 0 Candidatus Liberibacter africanus 1 34020 276 species 364 species 556287 1 Candidatus Liberibacter solanacearum 0 Candidatus Liberibacter asiaticus 0 248 species 34021 1 33 no rank 62933 227290 0 Agrobacterium 0 293 7 1 15965 genus 357 1 359 2629 species 0 Agrobacterium rhizogenes 2 8314 species group 1183400 0 species 1732 1176649 1 Agrobacterium fabrum 0 358 6582 species 1 0 Agrobacterium tumefaciens 0 2 2632611 3099 no rank 1 1527 species 1842536 Agrobacterium sp. RAC06 0 861208 species 1572 1 0 Agrobacterium sp. H13-3 0 Agrobacterium vitis 373 1630 species 1 2 1 3598 genus 1525371 Neorhizobium 0 8 0 Neorhizobium galegae 1 399 species 3590 0 Rhizobium 3035 1 24 379 43370 genus species 2372 56730 1 Rhizobium gallicum 0 1 398 1660 species 0 Rhizobium tropici 5061 species 29449 1 Rhizobium etli 0 1 10083 species 384 Rhizobium leguminosarum 0 0 no rank 17738 2613769 18 0 Rhizobium sp. NXC14 1981173 species 1020 1 Rhizobium sp. N731 0 1 177 species 1703966 1703969 1680 species 1 0 Rhizobium sp. N324 1869170 species 1595 1 0 Rhizobium sp. S41 Rhizobium sp. Kim5 0 species 994 2020311 1 Rhizobium sp. ACO-34A 0 1 species 1683 1571470 Rhizobium sp. CIAT894 0 species 1642 2020312 1 1703962 species 4 1 0 Rhizobium sp. N1341 Rhizobium sp. N741 0 species 8 1703967 1 1 1665 species 1125847 Rhizobium sp. NT-26 0 0 Rhizobium sp. N871 1703968 species 2 1 1352 species 2048897 1 Rhizobium sp. NXC24 0 1914541 species 1302 1 0 Rhizobium sp. Y9 Rhizobium sp. IE4771 0 1 species 1060 1301032 0 Rhizobium sp. TAL182 2020313 226 species 1 2028343 species 1653 1 0 Rhizobium sp. 10195 Rhizobium sp. IRBG74 0 species 1498 424182 1 1 1703961 177 species 0 Rhizobium sp. N1314 1 396 3421 species 0 Rhizobium phaseoli 0 Shinella 26 1 2 323620 2887 genus 0 2861 no rank 2643062 1 0 Shinella sp. HZN7 879274 2861 species 1 0 10 no rank 17009 227292 genus 3320 106591 3 1 37 Ensifer 0 Ensifer sojae 0 1444 species 716925 1 1839 species 106592 1 Ensifer adhaerens 0 0 Sinorhizobium 472 1 7 28105 genus 13689 0 Sinorhizobium meliloti 382 species 3890 1 0 no rank 3000 2613772 2 Sinorhizobium sp. CCBAU 05631 0 1057 species 794846 1 1 1842534 1943 species 0 Sinorhizobium sp. RAC02 1 1197 species 110321 Sinorhizobium medicae 0 663276 3341 species group 1 0 1 3341 species 380 Sinorhizobium fredii 0 Sinorhizobium americanum 0 1 1789 species 194963 family 5842 772 18 1 25 Bartonellaceae 0 17 1 genus 5817 773 Bartonella 0 182 33045 267 species 1 0 Bartonella grahamii 1 774 species 462 0 Bartonella bacilliformis 0 Bartonella ancashensis 1318743 211 species 1 388640 species 165 1 0 Bartonella australis 33047 157 species 1 0 Bartonella vinsonii 0 Bartonella tribocorum 1 85701 281 species 0 Bartonella clarridgeiae 1 56426 192 species 0 Bartonella quintana 1 803 species 332 Bartonella apis 0 1503 species 1686310 1 Bartonella henselae 0 species 317 38323 1 2645622 no rank 1748 6 0 species 245 1933904 1 Bartonella sp. WD16.2 0 515256 species 426 1 0 Bartonella sp. 1-1C 1 1933910 species 280 0 Bartonella sp. A1379B 0 Bartonella sp. JB15 1933906 species 272 1 Bartonella sp. Raccoon60 0 species 254 1933912 1 Bartonella sp. JB63 0 1 271 species 1933907 0 Hyphomicrobiaceae 223 1 19 45401 20442 family Devosia 0 164 4 1 genus 6400 46913 0 6236 no rank 196773 3 1643450 species 2173 1 0 Devosia sp. H5989 Devosia sp. A16 0 species 2729 1736675 1 Devosia sp. I507 0 1 species 1334 2083786 2148 genus 59282 2 1 60 Blastochloris 0 0 Blastochloris viridis 1079 2088 species 1 0 Filomicrobium 1 1 2 119044 753 genus species 752 1608628 1 Candidatus Filomicrobium marinum 0 33 0 Hyphomicrobium 81 genus 6327 1 4 species 2490 1427356 1 Hyphomicrobium nitrativorans 0 0 1 2619925 no rank 2249 1 2249 species 717785 Hyphomicrobium sp. MC1 0 0 Hyphomicrobium denitrificans 1 53399 1555 species 5 0 Rhodomicrobium 1068 genus 900 1 2 0 Rhodomicrobium vannielii 1069 species 895 1 1 2 1082930 genus 1247 0 Pelagibacterium 8 Pelagibacterium halotolerans 0 1 1239 species 531813 2444 genus 29407 2 1 97 Rhodoplanes 0 0 1 2347 no rank 2619116 0 Rhodoplanes sp. Z2-YC6860 674703 species 2347 1 family 9731 255475 7 1 72 Aurantimonadaceae 0 414371 genus 1673 1 2 18 0 Aureimonas 0 1 1655 no rank 2615206 Aureimonas sp. AU20 0 1655 species 1349819 1 Martelella 0 104 4 1 7986 genus 293088 1 species 2797 1486262 Martelella endophytica 0 2629616 no rank 2581 1 0 Martelella sp. AD-3 0 species 2581 686597 1 1 293089 2504 species 0 Martelella mediterranea 20 1 family 25759 69277 Phyllobacteriaceae 0 217 13 Chelativorans 0 genus 1121 449972 2 1 1 2643807 no rank 1108 0 1 266779 species 1108 0 Chelativorans sp. BNC1 245876 genus 1114 1 2 17 0 Nitratireductor 472175 1097 species 1 0 Nitratireductor basaltis 27 Aminobacter 0 2666 genus 31988 2 1 0 Aminobacter aminovorans 1 83263 species 2639 1 2 274591 genus 1181 0 Hoeflea 5 1 2614931 no rank 1176 0 1 1620421 1176 species 0 Hoeflea sp. IMCC20628 genus 18329 68287 9 1 501 Mesorhizobium 0 Mesorhizobium ciceri 0 species 2785 39645 1 0 Mesorhizobium sp. B7 1 1670800 species 1570 Mesorhizobium japonicum 0 2151 species 2066070 1 0 Mesorhizobium opportunistum 593909 2588 species 1 71433 2318 species 1 0 Mesorhizobium amorphae 0 1 no rank 2323 325217 0 Mesorhizobium sp. WSM1497 1 278153 species 2323 0 Mesorhizobium australicum 536018 species 1842 1 0 Mesorhizobium loti 1 381 species 2251 33 Phyllobacterium 0 genus 1131 28100 2 1 1 1867719 species 1098 0 Phyllobacterium zundukense 8350 family 335928 7 1 161 Xanthobacteraceae 0 Xanthobacter 0 63 2 1 2931 genus 279 Xanthobacter autotrophicus 0 species 2868 280 1 2518 genus 152053 2 1 66 Starkeya 0 1 species 2452 921 Starkeya novella 0 0 Azorhizobium 65 1 2 6 2740 genus 1 2675 species 7 Azorhizobium caulinodans 0 141 Methylobacteriaceae 0 family 30917 119045 15 1 17683 genus 407 9 1 851 Methylobacterium 0 31998 2137 species 1 0 Methylobacterium radiotolerans Methylobacterium aquaticum 0 1 2859 species 270351 0 Methylobacterium phyllosphaerae 418223 1878 species 1 0 no rank 6181 2615210 3 1 species 2197 426117 Methylobacterium sp. 4-46 0 species 2044 925818 1 Methylobacterium sp. AMS5 0 1 1940 species 1479019 Methylobacterium sp. C1 0 0 Methylobacterium nodulans 114616 2019 species 1 species 1758 334852 1 Methylobacterium oryzae 0 18 0 Microvirga 186650 2272 genus 1 2 1 species 2254 1882682 Microvirga ossetica 0 3 genus 10821 2282523 0 1794 species 29429 1 Methylobacterium zatmanii 0 0 Methylobacterium extorquens 408 5654 species 1 223967 3373 species 1 0 Methylobacterium populi 4 1 4080 family 2036754 Chelatococcaceae 0 26 0 Chelatococcus 130 1 3 28209 genus 4054 no rank 2362 2638111 1 0 1 species 2362 1702325 Chelatococcus sp. CO-6 0 0 Chelatococcus daeguensis 444444 1562 species 1 Beijerinckiaceae 0 3 5 1 family 1404 45404 0 Beijerinckia 3 1 2 532 genus 498 0 Beijerinckia indica 533 species 495 1 Methylocella 0 5 2 1 903 genus 120652 0 Methylocella silvestris 199596 species 898 1 0 119042 4922 no rank 6 99 0 Pseudorhodoplanes 1734920 1418 genus 1 2 0 Pseudorhodoplanes sinuspersici 1235591 species 1319 1 30 Hartmannibacter 0 2143 genus 1572860 2 1 1 1482074 species 2113 0 Hartmannibacter diazotrophicus 8 0 Methyloceanibacter 1484898 1361 genus 1 2 0 Methyloceanibacter caenitepidi 1384459 species 1353 1 1 3 119043 family 1070 0 Rhodobiaceae 6 0 Parvibaculum 34 1 2 256616 genus 1064 0 Parvibaculum lavamentivorans 1 256618 1030 species Bradyrhizobiaceae 0 638 26 1 51058 family 41294 1 11 374 genus 26613 0 Bradyrhizobium 618 13875 no rank 2631580 6 0 Bradyrhizobium sp. 0 1 species 2368 376 0 Bradyrhizobium sp. BTAi1 1 288000 species 2379 0 Bradyrhizobium sp. CCGE-LA001 1 1223566 species 2370 Bradyrhizobium sp. ORS 278 0 species 2610 114615 1 species 2285 2057741 1 Bradyrhizobium sp. SK17 0 Bradyrhizobium sp. ORS 285 0 1863 species 115808 1 species 4360 1355477 1 Bradyrhizobium diazoefficiens 0 1 1274631 species 1736 0 Bradyrhizobium icense Bradyrhizobium oligotrophicum 0 species 2332 44255 1 Bradyrhizobium japonicum 0 1 species 3692 375 40136 genus 1520 1 2 21 0 Oligotropha 0 Oligotropha carboxidovorans 40137 species 1499 1 85413 8599 genus 1 5 140 0 Bosea 0 3 2653178 no rank 6032 Bosea sp. PAMC 26642 0 species 1951 1792307 1 0 Bosea sp. RAC05 1842539 species 2294 1 2015316 species 1787 1 0 Bosea sp. AS-1 0 Bosea vaviloviae 1526658 2427 species 1 1 2 1073 11008 genus 0 Rhodopseudomonas 112 1 1076 species 10896 0 Rhodopseudomonas palustris 16 0 Nitrobacter 911 genus 1745 1 3 1 913 species 800 0 Nitrobacter winogradskyi Nitrobacter hamburgensis 0 species 929 912 1 1 2 1649510 935 genus 0 Variibacter 63 1 species 872 1333996 Variibacter gotjawalensis 0 67 Brucellaceae 0 family 10699 118882 20 1 genus 4999 528 5 1 63 Ochrobactrum 0 0 Ochrobactrum anthropi 1 529 1445 species 571256 1143 species 1 0 Ochrobactrum pituitosum Ochrobactrum pseudogrignonense 0 1093 species 419475 1 271865 1255 species 1 0 Ochrobactrum sp. A44 Brucella 0 2359 14 1 genus 5633 234 235 169 species 1 0 Brucella abortus 0 Brucella canis 1 36855 332 species 0 4 2632610 1213 no rank 1891098 species 126 1 0 Brucella sp. 2002734562 species 288 1149952 1 Brucella sp. 09RB8471 0 1 species 471 1885919 Brucella sp. 141012304 0 Brucella sp. 09RB8910 0 328 species 1844051 1 1 444163 108 species 0 Brucella microti species 340 981386 1 Brucella vulpis 0 236 species 45 1 0 Brucella ovis Brucella ceti 0 354 species 120577 1 Brucella melitensis 0 species 138 29459 1 0 Brucella suis 29461 species 228 1 1 120576 species 347 0 Brucella pinnipedialis 0 2 2800059 order 1127 2 2800061 family 1127 0 24 Maricaulis 0 genus 1127 74317 2 1 Maricaulis maris 0 species 1103 74318 1 Sphingomonadales 0 689 82 1 order 97745 204457 335929 family 21178 1 22 315 0 Erythrobacteraceae 2 genus 1991 2800681 0 Erythrobacter atlanticus 0 1 species 719 1648404 0 Erythrobacter gangjinensis 502682 1272 species 1 2800685 1120 genus 1 0 0 Altererythrobacter marensis 543877 1120 species 1 6 no rank 6157 2800788 0 3 1 genus 2650 1111 Porphyrobacter 0 42 2683265 2608 no rank 2 0 0 Porphyrobacter sp. LM 6 1 1896196 1443 species Porphyrobacter HT-58-2 0 1165 species 2023229 1 168 0 Erythrobacter 1041 3507 genus 1 3 1 39960 species 1893 0 Erythrobacter litoralis 0 Porphyrobacter neustonensis 1112 1446 species 1 2 1979 genus 1855416 0 0 Erythrobacter flavus 192812 species 1099 1 266951 species 880 1 0 Erythrobacter seohaensis 1295327 3356 genus 1 3 53 0 Croceicoccus 1 species 1181 1348774 Croceicoccus naphthovorans 0 Croceicoccus marinus 0 2122 species 450378 1 1 2800682 genus 1569 0 1 species 1569 645517 Altererythrobacter namhicola 0 361177 2744 genus 1 4 140 0 Altererythrobacter Altererythrobacter atlanticus 0 1 species 1137 1267766 0 Altererythrobacter epoxidivorans 1 361183 1011 species 476157 species 456 1 0 Altererythrobacter ishigakiensis 2 2800686 genus 1947 0 0 Altererythrobacter mangrovi 1 1982042 species 871 1076 species 692370 1 Altererythrobacter dongtanensis 0 75878 family 41297 59 1 1120 Sphingomonadaceae 0 0 1 2685927 genus 1521 Sphingomonas sp. JJ-A5 0 1521 species 1921510 1 262 Sphingopyxis 0 11545 genus 165697 10 1 1 1039 species 117207 Sphingopyxis alaskensis 0 Sphingopyxis fribergensis 0 species 1020 1515612 1 0 Sphingopyxis terrae 1 33052 1203 species species 2259 33050 1 Sphingopyxis macrogoltabida 0 4348 no rank 2614943 4 0 292913 1028 species 1 0 Sphingopyxis sp. 113P3 species 1656 1357916 1 Sphingopyxis sp. QXT-31 0 Sphingopyxis sp. MG 0 1 species 1070 1866325 0 Sphingopyxis sp. LPB0140 1 1913578 species 594 Sphingopyxis granuli 0 species 1414 267128 1 0 genus 806 2709685 1 0 Sphingorhabdus flavimaris 1 266812 806 species 22 0 Zymomonas 541 genus 1296 1 2 0 Zymomonas mobilis 1 542 1274 species 1734 genus 1434046 3 1 53 Sphingorhabdus 0 0 2 2614947 no rank 1681 1 species 846 2077182 Sphingorhabdus sp. YGSMI21 0 1 1806885 species 835 0 Sphingorhabdus sp. M41 11 0 Rhizorhabdus 1649486 genus 1743 1 2 1 1850238 1732 species 0 Rhizorhabdus dicambivorans 1412 genus 72173 2 1 51 Citromicrobium 0 1 2630544 1361 no rank 0 Citromicrobium sp. JL477 0 species 1361 1634516 1 Novosphingobium 0 106 5 1 genus 6790 165696 0 1 1604 no rank 2644732 1 702113 species 1604 0 Novosphingobium sp. PP1Y 0 Novosphingobium resinovorum 158500 species 1873 1 1 205844 1793 species 0 Novosphingobium pentaromativorans Novosphingobium aromaticivorans 0 1414 species 48935 1 2 1 genus 1722 150203 Blastomonas 0 23 1 2626550 no rank 1699 0 Blastomonas sp. RAC04 0 species 1699 1842535 1 403 0 Sphingomonas 13687 genus 24808 1 15 1 species 1676 93064 Sphingomonas koreensis 0 Sphingomonas melonis 0 1550 species 152682 1 1 1609977 1450 species 0 Sphingomonas hengshuiensis no rank 9681 196159 6 0 1938607 1527 species 1 0 Sphingomonas sp. LM7 Sphingomonas sp. LK11 0 species 2150 1390395 1 1 1260 species 1327635 Sphingomonas sp. Cra20 0 0 Sphingomonas sp. MM-1 745310 2009 species 1 Sphingomonas sp. KC8 0 1 1145 species 1030157 0 Sphingomonas sp. NIC1 1 1961362 species 1590 Sphingomonas wittichii 0 2070 2 1 4155 species 160791 0 Sphingomonas sp. DC-6 1 1283312 2085 strain Sphingomonas panacis 0 1 1632 species 1560345 0 Sphingomonas taxi 1549858 species 2061 1 1 species 2200 397260 Sphingomonas sanxanigenens 0 549 0 Sphingobium 165695 genus 21381 1 15 332056 1354 species 1 0 Sphingobium japonicum 1569 species 120107 1 Sphingobium cloacae 0 0 Sphingobium indicum 1 332055 1425 species 0 Sphingobium chlorophenolicum 46429 1500 species 1 13690 species 1875 1 0 Sphingobium yanoikuyae 6 2611147 no rank 8875 0 Sphingobium sp. MI1205 0 1 1193 species 407020 1 1843368 species 1319 0 Sphingobium sp. RAC03 1315974 species 1794 1 0 Sphingobium sp. TKS 1 1989 species 484429 Sphingobium sp. YBL2 0 0 Sphingobium sp. EP60837 1 1855519 1209 species 1 627192 species 1371 0 Sphingobium sp. SYK-6 76947 species 1149 1 0 Sphingobium herbicidovorans 0 Sphingobium hydrophobicum 1 1673076 species 1602 0 Sphingobium baderi 1 1332080 species 1483 3 0 Parvularculales 255473 order 452 1 3 1 2 255474 449 family 0 Parvularculaceae 10 1 208215 439 genus 0 Parvularcula bermudensis 0 species 439 208216 1 0 Caulobacterales 251 1 20 204458 order 32393 Caulobacteraceae 0 481 19 1 32142 family 76892 genus 2552 20 2 1 39 Phenylobacterium 0 0 Phenylobacterium zucineum 284016 2513 species 1 genus 1467 76890 2 1 14 Asticcacaulis 0 0 Asticcacaulis excentricus 78587 species 1453 1 no rank 517 81440 1 0 517 species 1759059 1 Caulobacteraceae bacterium OTSz_A_272 0 0 Brevundimonas 179 1 7 41275 genus 11377 0 Brevundimonas vesicularis 1 41276 species 1698 3 2622653 5681 no rank 0 1 1936 species 1532555 Brevundimonas sp. DS20 0 0 Brevundimonas sp. LM2 1938605 2101 species 1 Brevundimonas sp. GW460-12-10-14-LB2 0 species 1644 1827469 1 1 species 2144 588932 Brevundimonas naejangsanensis 0 1 1675 species 74313 Brevundimonas subvibrioides 0 genus 15748 75 6 1 218 Caulobacter 0 0 Caulobacter segnis 88688 species 2512 1 Caulobacter vibrioides 0 1 5048 species 155892 0 Caulobacter henricii 69395 1615 species 1 0 Caulobacter mirabilis 69666 species 2428 1 0 3927 no rank 2648921 1 366602 species 3927 1 0 Caulobacter sp. K31 5 2800060 2412 order 0 2412 family 69657 5 1 61 Hyphomonadaceae 0 0 Hyphomonas 21 1 3 85 1806 genus 0 674 no rank 2630699 1 1906738 674 species 1 0 Hyphomonas sp. Mor2 0 Hyphomonas neptunium 1 81032 species 1111 0 1 genus 545 2723 Hirschia baltica 0 1 545 species 2724 5 0 Pelagibacterales 54526 order 2618 1 9 1655514 2090 family 1 6 3 0 Pelagibacteraceae 198251 genus 923 1 3 6 0 Candidatus Pelagibacter Candidatus Pelagibacter ubique 0 1 739 species 198252 0 2647897 178 no rank 1 178 species 1002672 1 Candidatus Pelagibacter sp. IMCC9063 0 0 2 no rank 1164 1655516 1 744985 572 species 0 alpha proteobacterium HIMB59 alpha proteobacterium HIMB5 0 species 592 859653 1 2 0 Candidatus Fonsibacter 2045213 genus 523 1 2 0 Candidatus Fonsibacter ubiquis 1925548 521 species 1 Magnetococcales 0 19 3 1 order 844 1191478 2 1 family 825 1191479 Magnetococcaceae 0 14 0 811 genus 162171 1 Magnetococcus marinus 0 811 species 1124597 1 1022 0 Rhodospirillales 204441 102680 order 1 66 41295 family 62161 1 30 1032 0 Rhodospirillaceae 87 Rhodospirillum 0 6392 genus 1081 3 1 1 34018 4051 species 0 Rhodospirillum centenum species 2254 1085 1 Rhodospirillum rubrum 0 3 1 genus 2592 168934 Thalassospira 0 40 2048283 species 1344 1 0 Thalassospira sp. CSC3H3 1 1208 species 220697 Thalassospira xiamenensis 0 Magnetospirillum 0 343 5 1 genus 14129 13134 1 55518 species 3776 0 Magnetospirillum gryphiswaldense 0 Magnetospirillum magneticum 1 84159 species 3233 0 2 2617991 6777 no rank 0 Magnetospirillum sp. XM-1 1 1663591 species 3273 Magnetospirillum sp. ME-1 0 3504 species 1639348 1 0 Azospirillum 291 1 5 191 22559 genus species 7233 192 1 Azospirillum brasilense 0 1 193 species 7809 0 Azospirillum lipoferum 0 Azospirillum thiophilum 1 528244 5082 species 2144 species 1226968 1 Azospirillum humicireducens 0 1 2 171436 genus 3247 0 Tistrella 65 0 Tistrella mobilis 1 171437 species 3182 3 0 Magnetospira 1182780 1327 genus 1 2 no rank 1324 2685734 1 0 1 1324 species 1288970 Magnetospira sp. QH-2 0 Niveispirillum 0 22 2 1 2965 genus 1543704 Niveispirillum cyanobacteriorum 0 species 2943 1612173 1 1 2 1543705 genus 5106 0 Nitrospirillum 36 species 5070 28077 1 Nitrospirillum amazonense 0 2 1 406 genus 1804663 Haematospirillum 0 1 0 Haematospirillum jordaniae 1 1549855 species 405 genus 2091 1612157 2 1 23 Pararhodospirillum 0 species 2068 1084 1 Pararhodospirillum photometricum 0 0 1 315 genus 1263978 1263979 315 species 1 0 Candidatus Endolissoclinum faulkneri 433 39497 family 1 35 551 0 Acetobacteraceae 1 2 89583 genus 2149 0 Gluconacetobacter 23 Gluconacetobacter diazotrophicus 0 1 2126 species 33996 3 1 3263 genus 522 Acidiphilium 0 135 Acidiphilium cryptum 0 1 1568 species 524 0 Acidiphilium multivorum 1 62140 1560 species 125216 genus 6882 1 3 348 0 Roseomonas Roseomonas gilardii 0 2962 species 257708 1 1 3572 no rank 2617492 0 0 Roseomonas sp. FDAARGOS_362 1 2018065 3572 species 99 Acetobacter 0 8855 genus 434 8 1 0 Acetobacter oryzifermentans 1633874 425 species 1 Acetobacter pomorum 0 species 654 65959 1 0 1 subgenus 893 151157 893 species 435 1 Acetobacter aceti 0 0 Acetobacter senegalensis 1 446692 1719 species Acetobacter persici 0 1 species 1320 1076596 0 Acetobacter tropicalis 104102 1568 species 1 1 438 species 2177 0 Acetobacter pasteurianus 0 Asaia 3 1 2 91914 genus 1058 species 1055 91915 1 Asaia bogorensis 0 1078 genus 1602345 2 1 12 Parasaccharibacter 0 1066 species 1510841 1 Parasaccharibacter apium 0 1 3 441 2982 genus 0 Gluconobacter 43 0 Gluconobacter oxydans 1 442 1688 species 1251 species 318683 1 Gluconobacter albidus 0 Granulibacter 0 38 2 1 3115 genus 364409 0 Granulibacter bethesdensis 364410 species 3077 1 Kozakia 0 2 2 1 994 genus 153497 Kozakia baliensis 0 species 992 153496 1 19 Neoasaia 0 948 genus 320496 2 1 Neoasaia chiangmaiensis 0 1 species 929 320497 183 Komagataeibacter 0 7622 genus 1434011 5 1 993 species 33995 1 Komagataeibacter europaeus 0 species 1612 265960 1 Komagataeibacter nataicola 0 Komagataeibacter xylinus 0 3705 species 28448 1 species 1129 1177712 1 Komagataeibacter medellinensis 0 589 0 Rhodobacterales 204455 order 119223 1 91 0 Rhodobacteraceae 1885 1 90 31989 family 118634 0 Defluviimonas 4 1 2 1097466 genus 2917 1335048 species 2913 1 0 Defluviimonas alba 0 1 genus 631 1759396 0 2622455 631 no rank 1 1 1920883 species 631 0 Marivivens sp. JLT3646 2 1 3777 genus 227873 Pannonibacter 0 77 0 Pannonibacter phragmitetus 1 121719 3700 species 4 Roseibacterium 0 1386 genus 159345 2 1 Roseibacterium elongatum 0 species 1382 159346 1 3 1 1750 genus 2433 Roseobacter 0 5 1 873 species 42443 Roseobacter litoralis 0 1 2434 species 872 0 Roseobacter denitrificans 1 2 360528 2064 genus 0 Pelagibaca 35 1 2029 species 1250539 Pelagibaca abyssi 0 265 genus 19994 1 9 320 0 Paracoccus species 1849 1945662 1 Paracoccus contaminans 0 Paracoccus yeei 0 1 species 3613 147645 0 Paracoccus sp. CBA4604 1 2065379 species 2115 1 species 1506 34003 Paracoccus aminophilus 0 1 2598 species 34004 Paracoccus aminovorans 0 1907 no rank 246570 1 0 1 1907 species 1529068 Paracoccus sp. BM15 0 Paracoccus denitrificans 0 1 3192 species 266 0 Paracoccus zhejiangensis 1 1077935 2894 species 0 2 263377 genus 5627 1 2965 species 1229727 Thiobacimonas profunda 0 0 2662 no rank 2640570 1 1 2662 species 1792508 Yangia sp. CCB-MM3 0 2034 genus 1609958 2 1 6 Confluentimicrobium 0 0 1 2643318 no rank 2028 1 1609966 species 2028 0 Confluentimicrobium sp. EMB200-NS6 2 Jannaschia 0 1109 genus 188905 2 1 2645469 no rank 1107 1 0 0 Jannaschia sp. CCS1 1 290400 1107 species 875170 genus 6051 1 5 41 0 Celeribacter 0 Celeribacter manganoxidans 1 1411902 species 1903 Celeribacter indicus 0 1 2048 species 1208324 1 1289 species 1758178 Celeribacter ethanolicus 0 1 species 770 1397108 Celeribacter marinus 0 572 genus 1579315 2 1 1 Halocynthiibacter 0 0 Halocynthiibacter arcticus 1579316 571 species 1 0 1649279 1408 genus 1 379347 species 1408 1 0 Ruegeria mobilis Leisingera 0 25 2 1 genus 2442 191028 0 Leisingera methylohalidivorans 133924 2417 species 1 0 Octadecabacter 4 1 4 53945 1699 genus 1 569 species 1458307 Octadecabacter temperatus 0 1 1217908 species 596 0 Octadecabacter antarcticus 1 530 species 53946 Octadecabacter arcticus 0 1565 genus 74032 2 1 3 Antarctobacter 0 74033 1562 species 1 0 Antarctobacter heliothermus 2 no rank 2426 58840 0 0 Rhodobacteraceae bacterium QY30 1 2033435 1656 species 0 Rhodobacteraceae bacterium 1 1904441 species 770 98 Rhodovulum 0 genus 6919 34008 4 1 0 3648 no rank 2631432 2 1 species 1945 1564506 Rhodovulum sp. P5 0 Rhodovulum sp. MB263 0 1703 species 308754 1 35806 species 3173 1 0 Rhodovulum sulfidophilum 1537 genus 2211641 1 0 Loktanella vestfoldensis 0 species 1537 245188 1 1 2 genus 245186 Loktanella 0 4 0 Roseovarius 74030 genus 1428 1 2 Roseovarius mucosus 0 1 species 1424 215743 1 3 60136 4119 genus 0 Sulfitobacter 57 1402135 species 2174 1 0 Sulfitobacter pseudonitzschiae 1 196795 no rank 1888 0 0 Sulfitobacter sp. AM1-D1 1917485 1888 species 1 1 2 1284657 451 genus 0 Planktomarina 1 1 1284658 species 450 0 Planktomarina temperata 10 0 Ruegeria 97050 3769 genus 1 3 Ruegeria pomeroyi 0 species 2520 89184 1 0 1 2625375 1239 no rank 1 1239 species 292414 Ruegeria sp. TM1040 0 Ketogulonicigenium 0 26 3 1 3181 genus 92944 Ketogulonicigenium vulgare 0 1 species 1561 92945 species 1594 92947 1 Ketogulonicigenium robustum 0 187 0 Rhodobacter 1060 genus 10021 1 5 1061 2209 species 1 0 Rhodobacter capsulatus 0 196779 no rank 2968 2 Rhodobacter sp. LPB0142 0 1 1256 species 1850250 species 1712 2033869 1 Rhodobacter sp. CZR27 0 1063 species 4657 1 0 Rhodobacter sphaeroides genus 766 119541 1 0 441209 766 species 1 0 Rhodobaca barguzinensis 2 0 Dinoroseobacter 309512 genus 1882 1 2 Dinoroseobacter shibae 0 species 1880 215813 1 genus 5115 478070 4 1 71 Labrenzia 0 no rank 3355 2648686 2 0 1 species 1694 1674922 Labrenzia sp. CP4 0 2021862 species 1661 1 0 Labrenzia sp. VG12 1 species 1689 187304 Labrenzia aggregata 0 Sagittula 0 7 2 1 3061 genus 58842 3054 no rank 2624628 1 0 1 3054 species 2009329 Sagittula sp. P11 0 Phaeobacter 0 132 5 1 11268 genus 302485 1 3641 species 221822 Phaeobacter inhibens 0 3221 species 1580596 1 Phaeobacter piscinae 0 1 species 951 1844006 Phaeobacter porticola 0 60890 species 3323 1 0 Phaeobacter gallaeciensis 2 1 genus 1612 285107 Thioclava 0 2 0 Thioclava nitratireducens 1915078 species 1610 1 2 1 genus 2709 367771 Marinovum 0 134 1 species 2575 42444 Marinovum algicola 0 299261 1455 genus 1 0 Tateyamaria omphalii 0 1 1455 species 299262 0 Thalassococcus 436357 genus 2 1 200 68525 337605 subphylum 0 class 268979 28221 127 1 572 Deltaproteobacteria 0 1 38 29 81240 order 0 Myxococcales 1070 0 3 suborder 4102 224462 32 Kofleriaceae 0 4102 family 224464 3 1 1 2 162027 4070 genus 0 Haliangium 78 Haliangium ochraceum 0 1 3992 species 80816 0 80811 suborder 62577 26 1 3 1524213 family 1980 0 Vulgatibacteraceae 34 1 2 1524214 1946 genus 0 Vulgatibacter 52 1391653 1894 species 1 0 Vulgatibacter incomptus 236 0 Myxococcaceae 31 29437 family 1 9 83461 genus 10164 1 3 281 0 Corallococcus 4491 species 35 1 Myxococcus macrosporus 0 184914 5392 species 1 0 Corallococcus coralloides 5 1 genus 19037 32 Myxococcus 0 855 0 Myxococcus stipitatus 1 83455 3449 species 1 species 3136 34 Myxococcus xanthus 0 Myxococcus fulvus 0 1 species 8244 33 1 1297742 3353 species 0 Myxococcus hansupus 12886 family 1524215 5 1 122 Anaeromyxobacteraceae 0 Anaeromyxobacter 0 260 4 1 genus 12764 161492 2 2620896 6487 no rank 0 0 Anaeromyxobacter sp. K 1 447217 species 3649 species 2838 404589 1 Anaeromyxobacter sp. Fw109-5 0 0 Anaeromyxobacter dehalogenans 161493 species 6017 1 432 0 Archangiaceae 39 family 18274 1 9 50 Stigmatella 0 genus 4473 40 2 1 4423 species 41 1 Stigmatella aurantiaca 0 1 2 47 4604 genus 0 Archangium 85 Archangium gephyra 0 species 4519 48 1 2 1 4214 genus 42 Cystobacter 0 121 Cystobacter fuscus 0 4093 species 43 1 31 0 Melittangium 44 genus 4551 1 2 0 Melittangium boletus 83453 4520 species 1 8 80812 suborder 13491 0 1 3 1055686 2757 family 0 Sandaracinaceae 99 genus 2658 1055688 2 1 29 Sandaracinus 0 1 927083 species 2629 0 Sandaracinus amylolyticus 5 1 10734 family 49 Polyangiaceae 0 63 genus 2042 50 2 1 6 Chondromyces 0 species 2036 52 1 Chondromyces crocatus 0 0 Sorangium 102 1 2 39643 genus 8629 56 species 8527 1 0 Sorangium cellulosum 69541 order 43150 1 24 519 0 Desulfuromonadales 426 0 Desulfuromonadaceae 213421 14573 family 1 9 47 Pelobacter 0 genus 8596 18 5 1 0 1 1168 no rank 2620299 Pelobacter sp. SFB93 0 1 1168 species 1842532 1 29542 species 2104 0 Pelobacter acetylenicus Pelobacter propionicus 0 species 3648 29543 1 Pelobacter carbinolicus 0 species 1629 19 1 1 3 890 genus 5551 0 Desulfuromonas 48 0 Desulfuromonas soudanensis 1603606 2895 species 1 1 2614637 2608 no rank 0 Desulfuromonas sp. DDH964 0 1 species 2608 1823759 1 14 213422 28058 family 0 Geobacteraceae 263 0 Geobacter 579 1 11 28231 genus 25136 Geobacter uraniireducens 0 species 1646 351604 1 0 Geobacter lovleyi 1 313985 2347 species Geobacter pickeringii 0 1 species 2737 345632 1340425 species 2553 1 0 Geobacter anodireducens Geobacter daltonii 0 1 1574 species 1203471 species 3344 225194 1 Geobacter bemidjiensis 0 1 28232 1918 species 0 Geobacter metallireducens no rank 6371 2627627 2 0 1 443144 2975 species 0 Geobacter sp. M21 Geobacter sp. M18 0 species 3396 443143 1 0 Geobacter sulfurreducens 1 35554 2067 species 392332 2659 genus 1 2 2 0 Geoalkalibacter 1 483547 2657 species 0 Geoalkalibacter subterraneus 126 0 Desulfobacterales 213118 order 16633 1 19 0 Desulfobulbaceae 33 1 8 213121 family 7094 Desulfocapsa 0 1 2 1 831 genus 53318 Desulfocapsa sulfexigens 0 species 830 65555 1 15 Desulfurivibrio 0 2967 genus 427922 2 1 427923 2952 species 1 0 Desulfurivibrio alkaliphilus 10 Desulfobulbus 0 2503 genus 893 2 1 1 1986146 2493 species 0 Desulfobulbus sp. ORNL 0 1 109168 760 genus 0 Desulfotalea psychrophila 84980 species 760 1 9413 family 213119 10 1 97 Desulfobacteraceae 0 896 genus 4195 1 3 17 0 Desulfococcus species 2535 181663 1 Desulfococcus oleovorans 0 1643 species 897 1 Desulfococcus multivorans 0 1 2 2295 genus 1469 0 Desulfobacterium 6 2296 species 1463 1 0 Desulfobacterium autotrophicum 1 2 28222 1799 genus 0 Desulfobacula 5 1 1794 species 28223 Desulfobacula toluolica 0 Desulfatibacillum 0 1 2 1 genus 1853 218207 259354 species 1852 1 0 Desulfatibacillum alkenivorans Syntrophobacterales 0 40 10 1 order 4245 213462 Syntrophobacteraceae 0 21 3 1 family 1535 213465 29526 1514 genus 1 2 4 0 Syntrophobacter 1 119484 species 1510 0 Syntrophobacter fumaroxidans 0 Syntrophaceae 11 1 6 213468 2670 family Desulfomonile 0 1 2 1 genus 569 2357 1 568 species 2358 Desulfomonile tiedjei 0 1048 genus 43773 2 1 2 Syntrophus 0 0 Syntrophus aciditrophicus 1 316277 1046 species 1 60892 1042 genus 0 0 Desulfobacca acetoxidans 60893 species 1042 1 787 0 Desulfovibrionales 213115 117324 order 1 26 4 0 Desulfohalobiaceae 213117 1158 family 1 3 0 Desulfohalobium 1 1 2 45662 1154 genus 0 Desulfohalobium retbaense 1 45663 species 1153 Desulfovibrionaceae 0 487 18 1 109951 family 194924 1 2 41707 936 genus 0 Lawsonia 24 29546 species 912 1 0 Lawsonia intracellularis 404 Desulfovibrio 0 92953 genus 872 9 1 1 species 56492 44742 Desulfovibrio fairfieldensis 0 0 Desulfovibrio magneticus 184917 species 4735 1 1 1725232 species 1150 0 Candidatus Desulfovibrio trichonymphae 7709 species 901 1 Desulfovibrio piger 0 Desulfovibrio vulgaris 0 9812 species 881 1 1 876 species 7480 0 Desulfovibrio desulfuricans 0 1 no rank 2756 2593640 631220 2756 species 1 0 Desulfovibrio sp. G11 Desulfovibrio alaskensis 0 species 2415 58180 1 0 genus 3367 2582840 1 0 Desulfovibrio africanus 873 3367 species 1 2794998 1769 genus 1 0 880 species 1769 1 0 Desulfovibrio salexigens 0 Pseudodesulfovibrio 75 1 4 2035811 10439 genus 0 Pseudodesulfovibrio indicus 1716143 5405 species 1 Pseudodesulfovibrio profundus 0 1 1397 species 57320 species 3562 182210 1 Pseudodesulfovibrio aespoeensis 0 0 Desulfomicrobiaceae 137 1 4 213116 family 5428 genus 5291 898 3 1 35 Desulfomicrobium 0 0 Desulfomicrobium orale 1 132132 2546 species Desulfomicrobium baculatum 0 1 2710 species 899 213113 1266 order 1 5 4 0 Desulfurellales 0 Desulfurellaceae 2 1 4 117942 1262 family 1 2 33001 genus 769 0 Desulfurella 7 Desulfurella acetivorans 0 1 762 species 33002 0 1 84404 genus 491 species 491 84405 1 Hippea maritima 0 1 4 453227 4549 order 0 Desulfarculales 66 0 Desulfarculaceae 108 1 3 453228 4483 family 42 0 Desulfarculus 453229 genus 4375 1 2 0 Desulfarculus baarsii 1 453230 species 4333 0 Epsilonproteobacteria 138 1 73 29547 68626 class 1 67 213849 67229 order 0 Campylobacterales 1301 0 family 1466 2771471 5 0 Sulfurimonas 2 1 3 202746 1111 genus 0 Sulfurimonas denitrificans 1 39766 species 556 1 202747 species 553 0 Sulfurimonas autotrophica Sulfuricurvum 0 1 2 1 genus 355 286130 354 species 148813 1 Sulfuricurvum kujiense 0 2771472 2445 family 5 0 9 Sulfurovum 0 1228 genus 265570 3 1 0 Sulfurovum lithotrophicum 206403 species 547 1 0 no rank 672 2646778 1 1 672 species 387093 Sulfurovum sp. NBC37-1 0 2 0 Nitratifractor 269260 genus 1217 1 2 1 269261 1215 species 0 Nitratifractor salsuginis 0 Helicobacteraceae 24 1 15 72293 5714 family 23 Helicobacter 0 genus 5365 209 12 1 1591088 245 species 1 0 Helicobacter himalayensis species 357 32025 1 Helicobacter hepaticus 0 1 37372 species 280 0 Helicobacter bilis Helicobacter acinonychis 0 species 177 212 1 0 Helicobacter cetorum 138563 species 652 1 0 Helicobacter pylori 1 210 2238 species species 208 76936 1 Helicobacter typhlonius 0 Helicobacter cinaedi 0 350 species 213 1 1 267 no rank 2593540 0 1 species 267 222136 Helicobacter sp. MIT 01-6242 0 Helicobacter mustelae 0 1 species 177 217 214 391 species 1 0 Helicobacter felis 843 genus 325 1 2 1 0 Wolinella 324 species 844 1 Wolinella succinogenes 0 41 1 family 56303 72294 Campylobacteraceae 0 2473 Campylobacter 0 405 26 1 43241 genus 194 Campylobacter ureolyticus 0 878 species 827 1 0 Campylobacter volucris 1031542 species 664 1 Campylobacter coli 0 species 19755 195 1 634 species 374106 1 Campylobacter cuniculorum 0 200 species 414 1 0 Campylobacter curvus species 746 260714 1 Campylobacter insulaenigrae 0 2593542 2848 no rank 4 0 1660076 674 species 1 0 Campylobacter sp. RM12175 0 Campylobacter sp. RM8964 1660074 species 862 1 1 1660073 415 species 0 Campylobacter sp. RM6137 897 species 1500960 1 Campylobacter sp. RM16704 0 Campylobacter sputorum 0 species 741 206 1 201 2025 species 1 0 Campylobacter lari species 689 199 1 Campylobacter concisus 0 0 Campylobacter pinnipediorum 1965231 1143 species 1 1 411 species 1244531 Campylobacter iguaniorum 0 0 Campylobacter peloridis 488546 802 species 1 1 28898 species 295 0 Campylobacter helveticus 614 species 497724 1 Campylobacter subantarcticus 0 1 75658 species 900 0 Campylobacter lanienae Campylobacter jejuni 0 species 6415 197 1 0 Campylobacter fetus 1 196 808 species 1 539 species 198 Campylobacter hyointestinalis 0 1 76517 369 species 0 Campylobacter hominis 452 species 522485 1 Campylobacter avium 0 0 Campylobacter gracilis 1 824 694 species 57665 4268 genus 1 9 63 0 Sulfurospirillum Sulfurospirillum barnesii 0 1 506 species 44674 2618290 no rank 1895 3 0 220622 species 581 1 0 Sulfurospirillum sp. JPD-1 0 Sulfurospirillum sp. SL2-1 1986224 644 species 1 species 670 1581011 1 Sulfurospirillum sp. UCH001 0 1 66821 516 species 0 Sulfurospirillum multivorans Sulfurospirillum cavolei 0 1 682 species 366522 0 Sulfurospirillum halorespirans 194424 species 402 1 1 204 species 65553 Sulfurospirillum deleyianum 0 0 no rank 6321 2321108 5 0 2321187 1566 genus 1 0 Arcobacter sp. LPB0137 1 1850254 1566 species 0 1 no rank 1656 2321207 0 Arcobacter sp. L 944547 species 1656 1 1 3 28196 genus 3099 0 Arcobacter 22 Arcobacter butzleri 0 1 1869 species 28197 0 Arcobacter nitrofigilis 1 28199 species 1208 2 Nautiliales 0 1259 order 235899 5 1 0 2 224467 family 891 191291 genus 891 1 2 24 0 Nautilia Nautilia profundicola 0 1 867 species 244787 2 2795691 family 366 0 Nitratiruptor 0 1 2 1 genus 366 269258 1 no rank 365 2624044 0 Nitratiruptor sp. SB155-2 0 365 species 387092 1 0 6 1807140 class 4261 4261 order 225057 6 1 33 Acidithiobacillales 0 4228 family 225058 5 1 64 Acidithiobacillaceae 0 72 0 Acidithiobacillus 119977 4164 genus 1 4 0 Acidithiobacillus ferrooxidans 920 1538 species 1 Acidithiobacillus caldus 0 1 species 1234 33059 160808 1320 species 1 0 Acidithiobacillus ferrivorans 0 0 name 1 0 285 249240 superkingdom 2157 9 0 Euryarchaeota 28890 242685 phylum 1 230 0 clade 39347 2290931 116 class 15910 224756 50 1 42 Methanomicrobia 0 0 Methanomicrobiales 23 1 16 2191 order 4480 0 Methanocorpusculaceae 1 1 2 88404 family 718 0 2192 genus 717 1 0 Methanocorpusculum labreanum 1 83984 717 species Methanomicrobiaceae 0 3 6 1 family 2005 2194 Methanoculleus 0 36 4 1 1591 genus 45989 Methanoculleus bourgensis 0 1 546 species 83986 2198 616 species 1 0 Methanoculleus marisnigri no rank 393 2619537 1 0 1 86622 species 393 0 Methanoculleus sp. MAB1 1 230355 411 genus 0 1 54120 species 411 0 Methanolacinia petrolearia 0 196137 221 family 1 2202 221 genus 1 0 221 species 2203 1 Methanospirillum hungatei 0 13 0 Methanoregulaceae 1198451 family 1513 1 6 2 0 Methanosphaerula 475087 563 genus 1 2 0 Methanosphaerula palustris 1 475088 species 561 2 0 Methanoregula 395331 937 genus 1 3 0 Methanoregula boonei 358766 species 392 1 0 Methanoregula formicica 1 882104 species 543 94695 order 10390 1 28 21 0 Methanosarcinales Methanosarcinaceae 0 7 23 1 family 9328 2206 0 1 2321 genus 389 Methanohalobium evestigatum 0 1 species 389 2322 6825 genus 2207 13 1 48 Methanosarcina 0 1 species 840 2209 Methanosarcina mazei 0 Methanosarcina lacustris 0 species 275 170861 1 1 1051 species 2208 Methanosarcina barkeri 0 38027 species 850 1 0 Methanosarcina siciliae 1 418008 species 671 0 Methanosarcina horonobensis Methanosarcina thermophila 0 1 331 species 2210 1 2214 species 793 0 Methanosarcina acetivorans 2644672 no rank 1603 4 0 0 Methanosarcina sp. Kolksee 1434099 338 species 1 Methanosarcina sp. MTP4 0 1 635 species 1434100 Methanosarcina sp. WWM596 0 324 species 1434103 1 1 species 306 1434102 Methanosarcina sp. WH1 0 1 2215 363 species 0 Methanosarcina vacuolata 0 2175 522 genus 2 species 165 2177 1 Methanohalophilus halophilus 0 0 Methanohalophilus mahii 1 2176 357 species 231 genus 196136 1 0 1 species 231 39669 Methanosalsum zhilinae 0 0 2220 genus 384 1 Methanolobus psychrophilus 0 384 species 420950 1 2 2225 526 genus 0 Methanococcoides methylutens 0 species 218 2226 1 Methanococcoides burtonii 0 308 species 29291 1 0 Methanomethylovorans 2 1 2 101191 444 genus 442 species 101192 1 Methanomethylovorans hollandica 0 15 0 Methanosaetaceae 143067 1041 family 1 4 Methanothrix 0 5 3 1 genus 1026 2222 Methanothrix soehngenii 0 1 species 488 2223 301375 533 species 1 0 Methanosaeta harundinacea 1 5 570264 998 order 0 Methanocellales 4 4 1 994 family 570265 Methanocellaceae 0 8 3 1 genus 986 570266 Methanocella 0 2 1 1175444 species 168 0 Methanocella conradii 1 816 species 1175445 Methanocella arvoryzae 0 Halobacteria 0 95 66 1 23437 class 183963 Natrialbales 0 81 19 1 order 7136 1644060 1 18 1644061 7055 family 0 Natrialbaceae 148 0 63742 genus 393 1 0 Natrialba magadii 13769 species 393 1 Natronococcus 0 1 2 1 580 genus 29287 Natronococcus occultus 0 1 579 species 29288 2 1 538 genus 353799 Halostagnicola 0 5 0 Halostagnicola larsenii 1 353800 533 species 1 2256 345 genus 0 0 Natronobacterium gregoryi 44930 species 345 1 1 0 Natrinema 88723 genus 1085 1 3 484 species 69525 1 Natrinema pellirubrum 0 0 600 no rank 2622230 1 species 600 406552 1 Natrinema sp. J7-2 0 2 1 1044 genus 203193 Halobiforma 0 2 species 1042 229731 1 Halobiforma lacisalsi 0 0 1269201 536 genus 1 0 536 no rank 2621923 1 Salinarchaeum sp. Harcht-Bsk1 0 1 536 species 1333523 1044 genus 387342 2 1 5 Halopiger 0 1 387343 species 1039 0 Halopiger xanaduensis Haloterrigena 0 2 3 1 1342 genus 121871 1 588898 337 species 0 Haloterrigena daqingensis 1 62320 1003 species 0 Haloterrigena turkmenica 104 0 Halobacteriales 2235 order 9621 1 27 3133 family 2236 10 1 16 Halobacteriaceae 0 0 Halanaeroarchaeum 5 1 2 1656823 genus 169 1 species 164 1604004 Halanaeroarchaeum sulfurireducens 0 1 1980514 423 genus 0 Halodesulfurarchaeum formicicum 0 423 species 1873524 1 16 Halobacterium 0 genus 1854 2239 4 1 1 751 species 1407499 Halobacterium hubeiense 0 no rank 679 2668073 1 0 0 Halobacterium sp. DL1 751944 species 679 1 408 species 2242 1 Halobacterium salinarum 0 22 0 Halalkalicoccus 332246 671 genus 1 2 Halalkalicoccus jeotgali 0 1 species 649 413810 0 Haloarculaceae 131 1 16 1963268 6384 family 2 1 936 genus 1073987 Halorientalis 0 18 1 2648975 918 no rank 0 0 Halorientalis sp. IM1011 1932360 918 species 1 3 1 1274 genus 146825 Halorhabdus 0 3 430914 386 species 1 0 Halorhabdus tiamatea 0 Halorhabdus utahensis 146826 885 species 1 0 Halomicrobium 2 1 2 203135 658 genus 1 57705 species 656 0 Halomicrobium mukohataei 958 genus 63743 3 1 1 Natronomonas 0 Natronomonas pharaonis 0 1 species 568 2257 1 389 species 416273 Natronomonas moolapensis 0 58 Haloarcula 0 genus 2427 2237 5 1 1 563 species 1932004 Haloarcula taiwanensis 0 2624677 no rank 550 1 0 species 550 1592728 1 Haloarcula sp. CBA1115 0 1 2238 658 species 0 Haloarcula marismortui 0 Haloarcula hispanica 1 51589 species 598 1644055 order 6585 1 19 82 0 Haloferacales 0 2678336 450 no rank 1 halophilic archaeon DL31 0 species 450 756883 1 Haloferacaceae 0 6 9 1 3472 family 1644056 4 1 2891 genus 2251 Haloferax 0 70 Haloferax volcanii 0 species 1127 2246 1 1 species 542 2252 Haloferax mediterranei 0 species 1152 35746 1 Haloferax gibbonsii 0 60846 450 genus 1 2 1 0 Halogeometricum 1 60847 species 449 0 Halogeometricum borinquense 1 2 293431 genus 125 0 Haloquadratum 2 Haloquadratum walsbyi 0 1 species 123 293091 8 1 family 2581 1963271 Halorubraceae 0 52 1 3 56688 1268 genus 0 Halorubrum 20 species 809 29284 1 Halorubrum trapanicum 0 0 Halorubrum lacusprofundi 1 2247 439 species 1644057 813 genus 1 2 28 0 Salinigranum 0 Salinigranum rubrum 1 755307 species 785 448 genus 1209988 2 1 25 Halopenitus 0 1 1048396 species 423 0 Halopenitus persicus 183980 927 class 1 11 1 0 Archaeoglobi 0 Archaeoglobales 3 1 10 2231 926 order 923 family 2232 9 0 2 1 genus 68 54260 Ferroglobus 0 1 0 Ferroglobus placidus 54261 67 species 1 0 315 genus 190818 2 0 Geoglobus acetivorans 565033 species 181 1 134 species 113653 1 Geoglobus ahangari 0 0 Archaeoglobus 1 1 5 2233 genus 540 Archaeoglobus fulgidus 0 species 226 2234 1 species 109 84156 1 Archaeoglobus profundus 0 1 109 species 58290 Archaeoglobus veneficus 0 1316941 species 95 1 0 Archaeoglobus sulfaticallidus 0 2283794 clade 191280 41 183925 185831 class 1 24 1 0 Methanobacteria 1 0 Methanobacteriales 2158 185830 order 1 23 Methanobacteriaceae 0 1 21 1 family 185530 2159 6 182462 genus 2172 0 Methanobrevibacter millerae 0 1 species 878 230361 2173 species 178875 1 0 Methanobrevibacter smithii 0 Methanobrevibacter olleyae 294671 708 species 1 Methanobrevibacter ruminantium 0 601 species 83816 1 no rank 1400 2638681 2 0 1609968 747 species 1 0 Methanobrevibacter sp. YE315 653 species 224719 1 Methanobrevibacter sp. AbM4 0 Methanothermobacter 0 2 5 1 434 genus 145260 1 2631116 no rank 122 0 Methanothermobacter sp. CaT2 0 1 122 species 866790 145262 species 150 1 0 Methanothermobacter thermautotrophicus 0 Methanothermobacter marburgensis 145263 species 96 1 0 Methanothermobacter wolfeii 145261 species 64 1 0 1 2316 genus 701 0 Methanosphaera stadtmanae 2317 701 species 1 1 8 2160 genus 1932 0 Methanobacterium 5 0 2627676 576 no rank 2 0 Methanobacterium sp. MB1 1 1379702 species 317 0 Methanobacterium sp. MZ-A1 1911685 259 species 1 0 Methanobacterium congolense 1 118062 species 210 Methanobacterium subterraneum 0 1 213 species 59277 0 Methanobacterium formicicum 1 2162 species 237 0 Methanobacterium lacus 877455 species 400 1 1 species 291 868131 Methanobacterium paludis 0 0 1 2178 family 299 0 genus 299 2179 1 2180 299 species 1 0 Methanothermus fervidus Methanococci 0 2 17 1 class 5449 183939 5447 order 2182 16 1 1 Methanococcales 0 0 6 3461 family 2183 1 242 genus 155862 0 0 Methanothermococcus okinawensis 155863 species 242 1 3219 genus 2184 5 1 1 Methanococcus 0 0 Methanococcus maripaludis 39152 species 2063 1 Methanococcus aeolicus 0 species 474 42879 1 0 Methanococcus vannielii 2187 species 370 1 0 Methanococcus voltae 2188 species 311 1 9 family 1985 196117 0 1 0 Methanocaldococcus 196118 genus 1635 1 7 231 species 2190 1 Methanocaldococcus jannaschii 0 Methanocaldococcus fervens 0 174 species 83171 1 Methanocaldococcus vulcanius 0 1 296 species 73913 Methanocaldococcus infernus 0 1 species 240 67760 0 315 no rank 2641196 1 Methanocaldococcus sp. FS406-22 0 1 315 species 644281 Methanocaldococcus bathoardescens 0 1 species 378 1301915 1 2 196119 350 genus 0 Methanotorris 2 species 348 2189 1 Methanotorris igneus 0 3 Thermococci 0 class 6797 183968 41 1 Thermococcales 0 8 40 1 6794 order 2258 39 1 6786 family 2259 Thermococcaceae 0 22 58 0 Thermococcus 2263 5574 genus 1 29 54262 species 74 1 0 Thermococcus chitonophagus 1 54077 species 250 0 Thermococcus barossii 0 Thermococcus eurythermalis 1 1505907 206 species 1 71997 151 species 0 Thermococcus gorgonarius Thermococcus siculi 0 1 species 178 72803 species 179 71998 1 Thermococcus pacificus 0 219 species 277988 1 Thermococcus thioreducens 0 187880 226 species 1 0 Thermococcus radiotolerans 0 Thermococcus kodakarensis 1 311400 species 250 Thermococcus paralvinellae 0 1 species 138 582419 1 342948 120 species 0 Thermococcus onnurineus 1 species 192 1712654 Thermococcus piezophilus 0 Thermococcus profundus 0 167 species 49899 1 6 2627626 1085 no rank 0 Thermococcus sp. 4557 0 203 species 1042877 1 Thermococcus sp. AM4 0 species 240 246969 1 Thermococcus sp. 5-4 0 species 175 2008440 1 1 101 species 122420 Thermococcus sp. P6 0 1674923 species 84 1 0 Thermococcus sp. 2319x1 Thermococcus sp. EXT12c 0 1 282 species 2016361 1 2265 214 species 0 Thermococcus litoralis 0 Thermococcus cleftensis 1 163003 204 species 1 172049 species 235 0 Thermococcus sibiricus 1 110164 species 216 0 Thermococcus guaymasensis Thermococcus barophilus 0 171 species 55802 1 1 53952 species 285 0 Thermococcus peptonophilus 187878 species 179 1 0 Thermococcus gammatolerans Thermococcus celer 0 1 species 283 2264 0 Thermococcus nautili 1 195522 species 294 1026 genus 2260 8 1 1 Pyrococcus 0 29292 species 84 1 0 Pyrococcus abyssi 0 Pyrococcus yayanosii 1008460 157 species 1 Pyrococcus kukulkanii 0 1 species 84 1609559 0 2629106 no rank 173 2 342949 96 species 1 0 Pyrococcus sp. NA2 1 1183377 species 77 0 Pyrococcus sp. ST04 1 285 species 53953 Pyrococcus horikoshii 0 0 Pyrococcus furiosus 2261 242 species 1 0 1 164 genus 83867 1 971279 species 164 0 Palaeococcus pacificus 20 4325 clade 2283796 0 17 1 class 4140 183967 Thermoplasmata 0 10 2 Methanomassiliicoccales 0 order 1285 1235850 6 1 3 1 family 708 1577788 Methanomassiliicoccaceae 0 2 1 genus 265 1607807 0 Candidatus Methanoplasma termitum 0 species 265 1577791 1 1080709 genus 441 1 0 species 441 1406512 1 Candidatus Methanomassiliicoccus intestinalis 0 0 2 family 575 2517203 genus 575 1291539 2 1 74 Candidatus Methanomethylophilus 0 Candidatus Methanomethylophilus alvus 0 1 501 species 1291540 0 Thermoplasmatales 10 1 9 2301 order 1927 0 no rank 990 1919231 1 0 Thermoplasmatales archaeon BRNA1 1 1054217 990 species 1 1747776 102 family 0 1 1747777 genus 102 0 1673428 102 species 1 0 Cuniculiplasma divulgatum 90142 family 293 2 0 2 74968 293 genus 0 species 133 97393 1 Ferroplasma acidarmanus 0 1 74969 160 species 0 Ferroplasma acidiphilum 0 1 46630 248 family 1 genus 248 46631 0 1 82076 248 species 0 Picrophilus torridus 3 46659 284 family 0 genus 284 2302 3 1 11 Thermoplasma 0 Thermoplasma volcanium 0 1 species 149 50339 0 Thermoplasma acidophilum 2303 124 species 1 0 918 no rank 1234666 1 0 methanogenic archaeon ISO4-H5 1495144 918 species 1 1803510 185 clade 3 0 Aciduliprofundum 0 1 3 1 185 genus 379546 Aciduliprofundum boonei 0 1 122 species 379547 0 2633939 no rank 62 1 Aciduliprofundum sp. MAR08-339 0 species 62 673860 1 1783276 59 clade 1 0 0 phylum 59 1801631 1 0 1 59 genus 2490204 species 59 1920749 1 Candidatus Micrarchaeota archaeon Mia14 0 54 1783275 clade 6496 0 1 Thaumarchaeota 0 phylum 2004 651137 13 1 0 order 770 31932 3 3 338190 family 770 0 0 1 genus 242 1993653 0 Candidatus Nitrosomarinus catalina 1 1898749 species 242 0 genus 528 338191 2 1 species 257 1229909 Candidatus Nitrosopumilus sediminis 0 1 1580092 271 species 0 Candidatus Nitrosopumilus adriaticus 0 Nitrososphaeria 1 1 6 1643678 725 class 1 0 Nitrososphaerales 1033996 order 576 1 3 0 2 1033997 575 family 4 Nitrososphaera 0 575 genus 497726 2 1 0 Nitrososphaera viennensis 1 1034015 species 571 2 order 148 1968909 0 1 2 1968910 148 family 0 Candidatus Nitrosocaldaceae 1 0 1 498374 genus 147 1 2045011 species 147 0 Candidatus Nitrosocaldus islandicus 0 3 508 no rank 651142 0 1825023 237 genus 2 1846278 103 species 1 0 Candidatus Nitrosotenuis sp. AQ6f Candidatus Nitrosotenuis cloacae 0 1 species 134 1603555 1 271 genus 1593364 0 0 Candidatus Nitrosopelagicus brevis 1 1410606 species 271 4436 phylum 28889 40 0 class 4436 183924 40 1 1 Thermoprotei 0 8 2281 order 2258 0 0 8 family 2258 118883 0 2 225 genus 41980 1 species 143 1006005 Metallosphaera cuprina 0 1 species 82 43687 Metallosphaera sedula 0 1 318 genus 2100760 0 1 species 318 2287 Sulfolobus solfataricus 0 0 12914 275 genus 1 Acidianus hospitalis 0 species 275 563177 1 0 526 genus 69655 1 0 Sulfolobus tokodaii 111955 526 species 1 0 3 914 genus 2284 0 Sulfolobus islandicus 43080 363 species 1 1 species 255 2285 Sulfolobus acidocaldarius 0 296 no rank 2641160 1 0 0 Sulfolobus sp. A20 1 1891280 296 species 1 0 Acidilobales 871006 order 389 1 6 3 1 240 family 255472 Caldisphaeraceae 0 1 0 Caldisphaera 2 1 2 200414 239 genus 1 species 237 200415 Caldisphaera lagunensis 0 2 871007 family 148 0 1 2 105850 148 genus 0 Acidilobus 3 145 species 242703 1 Acidilobus saccharovorans 0 1 13 2266 order 1018 0 Thermoproteales 2 2 0 Thermofilaceae 114378 family 464 1 5 0 4 2268 462 genus 1550241 82 species 1 0 Thermofilum uzonense Thermofilum adornatus 0 1 144 species 1365176 Thermofilum carboxyditrophus 0 species 136 1483572 1 Thermofilum pendens 0 1 species 100 2269 0 Thermoproteaceae 1 1 7 2267 552 family 0 1 93 genus 76886 Caldivirga maquilingensis 0 1 93 species 76887 2270 genus 247 2 0 1 184117 144 species 0 Thermoproteus uzoniensis 2271 species 103 1 0 Thermoproteus tenax 0 genus 53 2276 1 0 Pyrobaculum islandicum 2277 species 53 1 0 158 genus 164450 2 species 95 985052 1 Vulcanisaeta moutnovskia 0 0 Vulcanisaeta distributa 164451 species 63 1 3 Desulfurococcales 0 order 770 114380 12 1 2307 251 family 3 0 122 genus 54247 1 0 54248 122 species 1 0 Hyperthermus butylicus 0 54251 63 genus 1 63 species 54252 1 Pyrolobus fumarii 0 0 1 genus 66 2308 1 species 66 1273541 Pyrodictium delaneyi 0 516 family 2272 8 0 genus 27 54253 1 0 0 Thermosphaera aggregans 54254 species 27 1 0 2 114 genus 54258 1 10 species 54259 Ignicoccus islandicus 0 1 160233 104 species 0 Ignicoccus hospitalis 1 477695 65 genus 0 Thermogladius calderae 0 1 65 species 1200300 0 2273 genus 105 2 1 47 species 2275 Desulfurococcus mucosus 0 1 94694 species 58 0 Desulfurococcus amylolyticus 0 genus 205 2279 2 0 Staphylothermus hellenicus 84599 120 species 1 0 Staphylothermus marinus 2280 85 species 1 phylum 56 51967 1 0 1 498845 56 genus 0 1 species 56 498846 Candidatus Korarchaeum cryptofilum 0