members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 31 32794 11071402 4861 10931322 4515 0 Bacteria superkingdom 84 1 2 49242 25 0 phylum 32066 0 Fusobacteriia 25 49242 203490 class 51 1 0 Fusobacteriales 49191 24 203491 52 1 order 12 37916 0 Fusobacteriaceae family 40 1 203492 genus 1 170 848 36373 9 Fusobacterium 0 species 850 2189 1 Fusobacterium mortiferum 0 0 Fusobacterium hwasookii 3971 1 1583098 species 0 Fusobacterium periodonticum 1 6657 860 species 0 Fusobacterium varium 4372 1 856 species 0 Fusobacterium necrophorum 1 859 859 species 1 1390 0 Fusobacterium gonidiaformans species 849 species 851 1 14518 Fusobacterium nucleatum 0 861 species Fusobacterium ulcerans 0 2247 1 167639 genus 1 2 Ilyobacter 0 1503 2 1 1501 0 Ilyobacter polytropus species 167642 1129771 family 20 1 0 Leptotrichiaceae 11223 11 2 2078 Streptobacillus 0 1 7 genus 34104 species 34105 1 2071 0 Streptobacillus moniliformis 0 Sneathia 2 1378 168808 1 1 genus 187101 species Sneathia amnii 0 1 1377 36 1 genus 32067 6264 5 0 Leptotrichia no rank 2633022 4670 3 0 1785996 species 0 Leptotrichia sp. oral taxon 847 1629 1 1426 1 Leptotrichia sp. oral taxon 212 0 species 712357 712368 species Leptotrichia sp. oral taxon 498 0 1 1615 species 40542 1 1558 Leptotrichia buccalis 0 0 1483 1 32068 genus 826 species Sebaldella termitidis 0 1 1483 2498710 clade 0 619 5 5 619 0 phylum 67814 693071 class 4 1 0 Caldisericia 619 5 order 2 1 693072 4 615 0 Caldisericales 3 613 Caldisericaceae 0 family 1 1 693073 Caldisericum 0 2 612 693074 genus 1 4 species 693075 608 1 0 Caldisericum exile 0 1425 3 2323 no rank 0 1425 3 1783234 clade 2 1209 0 clade 95901 class 2497643 2 1209 0 0 1209 2 2497644 order family 2497645 1209 2 0 Candidatus Babela 0 2 1209 1551504 1 22 genus Candidatus Babela massiliensis 0 1 1187 673862 species 95818 phylum 0 216 1 no rank 1895827 216 1 0 2056494 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 216 1 383 385418 0 clade 1783270 0 8 6198 142182 phylum 219685 1 29 class Gemmatimonadetes 0 8 6198 Gemmatimonadales 0 7 6169 219686 1 65 order 40 1 family 219687 6104 6 0 Gemmatimonadaceae 173479 genus 1 12 Gemmatimonas 0 2308 3 173480 species 0 Gemmatimonas aurantiaca 1158 1 species 1379270 1138 1 0 Gemmatimonas phototrophica 3756 2 0 Gemmatirosa 26 1 genus 1706036 species 861299 1 3730 0 Gemmatirosa kalamazoonesis 369 377063 0 clade 68336 phylum 1134404 7 3682 0 class 9 1 795747 7 3682 0 Ignavibacteria order 12 1 795748 6 3673 0 Ignavibacteriales 1334117 family 0 2 899 899 2 Melioribacter 0 genus 1 5 1134403 1134405 species 0 Melioribacter roseus 894 1 2762 3 0 Ignavibacteriaceae family 1 1 795749 1 13 genus 795750 2 2761 Ignavibacterium 0 2748 1 Ignavibacterium album 0 species 591197 363807 340 Bacteroidetes 0 1 42 phylum 976 23359 24 Sphingobacteriia 0 1 45 class 117747 0 Sphingobacteriales 23 23314 200666 55 1 order 84566 66 1 family 0 Sphingobacteriaceae 22 23259 genus 11 1 929509 1664 2 0 Solitalea 1 1653 0 Solitalea canadensis species 995 1 60 genus 84567 7289 6 Pedobacter 0 430522 species 0 Pedobacter steynii 1 1234 Pedobacter ginsengisoli 0 1667 1 363852 species species 984 1 1127 0 Pedobacter heparinus no rank 2628915 1 1474 0 0 Pedobacter sp. PACM 27299 1 1474 1727164 species 188932 species 0 Pedobacter cryoconitis 1727 1 1649482 12 1 genus 0 Pseudopedobacter 2 1684 151895 species 0 Pseudopedobacter saltans 1672 1 4 3488 Mucilaginibacter 0 genus 1 24 423349 species 1550579 1 1488 0 Mucilaginibacter gotjawali 1152 1 0 Mucilaginibacter sp. BJC16-A31 species 1234841 1 824 0 no rank 2617802 824 1 0 Mucilaginibacter sp. PAMC 26640 species 1300914 28453 genus 74 1 0 Sphingobacterium 6 5906 2609468 no rank 0 4 4726 930 1 Sphingobacterium sp. 21 0 species 743722 species 2003121 1236 1 Sphingobacterium sp. G1-14 0 0 Sphingobacterium sp. ML3W 1 1342 1538644 species species 1933220 1218 1 0 Sphingobacterium sp. B29 1106 1 Sphingobacterium mizutaii 0 species 1010 no rank 84568 3162 1 0 1986952 species 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 3162 class 1 216 117743 244384 150 Flavobacteriia 0 200644 1 290 order Flavobacteriales 0 149 244168 4 1 family 1853230 3 2192 0 Crocinitomicaceae 332102 genus 13 1 0 Fluviicola 2 2188 191579 species Fluviicola taffensis 0 1 2175 105 195205 0 Flavobacteriaceae 866 1 family 49546 1 2496 0 genus 83612 0 Psychroflexus torquis 2496 1 57029 species 1016 136 1 genus 0 Capnocytophaga 15 14023 555 1 Capnocytophaga haemolytica 0 species 45243 715 1 0 Capnocytophaga gingivalis species 1017 0 Capnocytophaga cynodegmi 1 1274 28189 species 0 6 5337 2640652 no rank species 1945657 1 1108 0 Capnocytophaga sp. H2931 Capnocytophaga sp. H4358 0 1 1129 1945658 species species 209053 823 1 0 Capnocytophaga sp. ChDC OS43 species 1705617 1 593 Capnocytophaga sp. oral taxon 323 0 1 692 Capnocytophaga sp. oral taxon 864 0 species 1316593 1 992 0 Capnocytophaga sp. oral taxon 878 species 1316596 species 28188 1 1508 0 Capnocytophaga canimorsus 1 1097 Capnocytophaga stomatis 0 species 1848904 1018 species 0 Capnocytophaga ochracea 645 1 743 1 0 Capnocytophaga leadbetteri species 327575 2013 1 Capnocytophaga sputigena 0 species 1019 10320 4 0 Cellulophaga genus 62 1 104264 76594 species Cellulophaga baltica 0 1 3453 species 59600 1 3107 0 Cellulophaga algicola 0 Cellulophaga lytica 1 3698 979 species 1649495 genus 0 3489 1 3489 1 0 no rank 2622645 3489 1 Seonamhaeicola sp. S2-3 0 species 1936081 1988 2 Salegentibacter 0 1 2 genus 143222 no rank 2633436 1 1986 0 species 1729720 1 1986 0 Salegentibacter sp. T436 genus 178469 1739 1 0 1739 1 Arenibacter algicola 0 species 616991 112040 genus 0 1019 1 63186 species 0 Zobellia galactanivorans 1 1019 genus 417127 2741 1 0 1 2741 Zunongwangia profunda 0 species 398743 2 1790 0 Aequorivita 2 1 genus 153265 0 Aequorivita sublithincola 1788 1 101385 species 2700084 genus 0 4615 1 4615 1 0 Lutibacter sp. LPB0138 species 1850246 2909 2 0 Flavivirga 2 1 genus 1209327 species 1803846 2907 1 Flavivirga eckloniae 0 286104 22 1 genus 0 Winogradskyella 6538 3 0 6516 2 2615021 no rank species 1936080 2768 1 Winogradskyella sp. J14-2 0 754409 species Winogradskyella sp. PG-2 0 3748 1 237 genus 53 1 0 Flavobacterium 24054 9 1763534 species 0 Flavobacterium crassostreae 1 1552 986 species 0 Flavobacterium johnsoniae 1 5795 55197 species 0 Flavobacterium branchiophilum 2184 1 2921 1 Flavobacterium psychrophilum 0 species 96345 996 species 0 Flavobacterium columnare 4585 1 species 1306519 1 1927 0 Flavobacterium commune 2170 1 Flavobacterium gilvum 0 species 1492737 1 2867 Flavobacterium indicum 0 species 312277 104267 genus 33 1 0 Tenacibaculum 5 14588 Tenacibaculum maritimum 0 1 2938 107401 species Tenacibaculum dicentrarchi 0 3067 1 669041 species Tenacibaculum todarodis 0 3829 1 1850252 species 4721 1 0 Tenacibaculum jejuense species 584609 2 2709 0 Croceibacter 1 1 genus 216431 0 Croceibacter atlanticus 1 2708 313588 species 3102 2 0 Olleya genus 2 1 336276 no rank 2615019 1 3100 0 2058135 species 0 Olleya sp. Bg11-27 1 3100 0 1 3007 1518147 genus 0 Wenyingzhuangia fucanilytica 3007 1 1790137 species 1 1329 0 genus 389486 0 1 1329 2648869 no rank 1453352 species Sediminicola sp. YIK13 0 1 1329 3 2481 Muricauda 0 1 9 genus 111500 species 111501 1 1430 Muricauda ruestringensis 0 0 Muricauda lutaonensis 1042 1 516051 species 1204360 1 1 genus Siansivirga 0 2 2711 Siansivirga zeaxanthinifaciens 0 2710 1 762954 species 0 1 2434 393005 genus 2434 1 Tamlana sp. UJ94 0 species 2069432 76831 genus 1 132 Myroides 0 5 5906 0 2 2855 2642485 no rank 1414 1 Myroides sp. A21 0 species 1583100 species 1458492 1441 1 Myroides sp. ZB35 0 0 Myroides odoratimimus 1495 1 76832 species 1 1424 Myroides profundi 0 species 480520 8978 5 Maribacter 0 1 96 genus 252356 0 3 7527 2615042 no rank species 313603 1954 1 Maribacter sp. HTCC2170 0 0 Maribacter sp. T28 2534 1 1836467 species 0 Maribacter sp. 1_2014MBL_MicDiv 3039 1 1644130 species 1178778 species Maribacter cobaltidurans 0 1355 1 Formosa 0 4326 3 225842 genus 1 16 2644710 no rank 0 2 4310 2357 1 Formosa sp. Hel3_A1_48 0 species 1336795 1336794 species 0 Formosa sp. Hel1_33_131 1953 1 genus 1 121 52959 20868 6 Polaribacter 0 4904 1 0 Polaribacter reichenbachii species 996801 3 11322 0 no rank 196858 species 313598 4212 1 Polaribacter sp. MED152 0 species 2058137 1 3412 Polaribacter sp. ALD11 0 1529069 species 0 Polaribacter sp. BM10 1 3698 species 1774273 1 4521 0 Polaribacter vadi 1241 1 0 genus 1176327 1241 1 0 no rank 2636237 1 1241 Aureitalea sp. RR4-38 0 species 2094025 Lutibacter 0 2 4169 358023 genus 1 30 1 4139 0 Lutibacter profundi species 1622118 261827 genus 0 3553 1 species 1736674 3553 1 0 Algibacter alginicilyticus 0 3754 2 61432 no rank 0 Flavobacteriaceae bacterium UJ101 1 2958 1150389 species 0 Flavobacteriaceae bacterium 3519-10 1 796 531844 species 4 5780 0 Dokdonia genus 49 1 326319 species 326320 2145 1 Dokdonia donghaensis 0 no rank 2615033 2 3586 0 1833 1 0 Dokdonia sp. 4H-3-7-5 species 983548 313590 species Dokdonia sp. MED134 0 1 1753 1 736 0 genus 252306 Robiginitalea biformata 0 736 1 252307 species 8382 5 Nonlabens 0 genus 1 196 363408 species 328515 2131 1 0 Nonlabens dokdonensis 319236 species Nonlabens sediminis 0 1 2113 2615035 no rank 0 3942 2 2058134 species 0 Nonlabens sp. MB-3u-79 1 1859 1476901 species Nonlabens sp. MIC269 0 1 2083 Lacinutrix 0 4 10209 291183 genus 1 101 2647285 no rank 0 2 6843 1 3430 0 Lacinutrix sp. Bg11-31 species 2057808 1 3413 0 Lacinutrix sp. 5H-3-7-4 species 983544 species 1486034 3265 1 0 Lacinutrix venerupis 292691 genus 29 1 0 Gramella 6355 5 1486245 species Gramella flava 0 1 1150 1 1582 Gramella sp. SH35 0 species 2126553 1997 1 Gramella forsetii 0 species 411153 species 1913577 1597 1 Gramella sp. LPB0144 0 246874 family Cryomorphaceae 0 1 4 3 1329 Ichthyobacteriaceae 0 1 4 family 1755828 2 1325 Ichthyobacterium 0 genus 1 33 1755829 0 Ichthyobacterium seriolicida 1292 1 242600 species 4 2787 0 no rank 313602 Candidatus Walczuchella 0 2 570 1940138 genus 1 2 species 1415657 568 1 0 Candidatus Walczuchella monophlebidarum Candidatus Sulcia 0 2 2217 336809 genus 1 10 Candidatus Sulcia muelleri 0 2207 1 336810 species 0 Blattabacteriaceae 10 9481 39782 family 22 1 0 Blattabacterium 9459 9 34098 genus 81 1 species 1653831 1310 1 Blattabacterium cuenoti 0 164514 species Blattabacterium punctulatus 0 1 1236 no rank 2647581 6832 6 0 species 1186051 1 1325 Blattabacterium sp. (Blaberus giganteus) 0 1 1132 Blattabacterium sp. (Periplaneta americana) 0 species 367488 624186 species 0 Blattabacterium sp. (Blattella germanica) 1194 1 39768 species 0 Blattabacterium sp. (Mastotermes darwiniensis) 924 1 367806 species Blattabacterium sp. (Blatta orientalis) 0 1 1042 1 1215 Blattabacterium sp. (Nauphoeta cinerea) 0 species 1316444 0 2 1524 1333713 family genus 1 32 267986 2 1524 Owenweeksia 0 Owenweeksia hongkongensis 0 1492 1 253245 species family 2762318 31356 20 0 1033 1 0 genus 28250 1 1033 Ornithobacterium rhinotracheale 0 species 28251 34084 7 1 genus 0 Riemerella 2327 2 34085 species 0 Riemerella anatipestifer 1 2320 genus 1013 1 1236 0 species 1014 1 1236 0 Weeksella virosa 16419 10 0 no rank 2782232 genus 64 1 59732 9 15646 0 Chryseobacterium no rank 2593645 5422 3 0 species 1721091 1 1576 0 Chryseobacterium sp. IHB B 17019 Chryseobacterium sp. StRB126 0 1 1800 878220 species Chryseobacterium sp. T16E-39 0 1 2046 2015076 species 1 3161 Chryseobacterium glaciei 0 species 1685010 0 Chryseobacterium gallinarum 1 1338 1324352 species species 558152 1 1753 0 Chryseobacterium piperi 0 Chryseobacterium camelliae 758 1 1265445 species species 253 1 3150 Chryseobacterium indologenes 0 0 773 1 2782228 genus 1 773 Chryseobacterium taklimakanense 0 species 536441 308865 genus 1 118 Elizabethkingia 0 6 10341 1756149 species 0 Elizabethkingia genomosp. 3 1577 1 238 species 0 Elizabethkingia meningoseptica 1 1629 species 1756150 1377 1 0 Elizabethkingia genomosp. 4 172045 species Elizabethkingia miricola 0 1 2119 3521 1 Elizabethkingia anophelis 0 species 1117645 71 32219 Bacteroidia 0 class 1 67 200643 Marinilabiliales 0 6563 12 1970189 order 1 13 1328 3 0 Salinivirgaceae family 4 1 1970190 Salinivirga 0 2 1324 1970191 genus 1 6 1307839 species Salinivirga cyanobacteriivorans 0 1318 1 1379 3 Marinilabiliaceae 0 1 13 family 558415 0 Alkalitalea 1366 2 1193324 7 1 genus 1359 1 0 Alkalitalea saponilacus species 889453 1 7 family 1573805 2 2158 Marinifilaceae 0 0 2151 1 2060722 genus 2151 1 Marinifilaceae bacterium SPP2 0 species 1717717 0 Prolixibacteraceae 1685 3 1471398 family 5 1 genus 13 1 1471399 1680 2 0 Draconibacterium 0 Draconibacterium orientale 1667 1 1168034 species order 1 122 171549 58 25589 Bacteroidales 0 2005519 family 0 2 449 397864 1 4 genus Barnesiella 0 2 449 397865 species Barnesiella viscericola 0 1 445 5 4161 0 no rank 333046 Candidatus Azobacteroides 0 2 1974 511434 1 3 genus species 511435 1 1971 Candidatus Azobacteroides pseudotrichonymphae 0 0 2187 3 909656 genus species 376805 839 1 Bacteroides salanitronis 0 1 667 Bacteroides vulgatus 0 species 821 species 357276 1 681 0 Bacteroides dorei 171550 17 1 family 0 Rikenellaceae 5 1174 758 2 0 Alistipes genus 7 1 239759 1 751 Alistipes finegoldii 0 species 214856 2 399 0 Mucinivorans genus 9 1 1611681 1433126 species Mucinivorans hirudinis 0 1 390 2261 7 0 Dysgonamonadaceae family 3 1 2005520 1026 2 0 Fermentimonas 4 1 genus 1784836 1562970 species 0 Fermentimonas caenicola 1022 1 Proteiniphilum 0 728 2 294702 genus 1 18 1 710 0 Proteiniphilum saccharofermentans species 1642647 307628 1 2 genus Petrimonas 0 2 504 species 1642646 1 502 0 Petrimonas mucosa 7 2276 Tannerellaceae 0 family 1 13 2005525 1080 3 0 Tannerella 2 1 genus 195950 1 547 Tannerella forsythia 0 species 28112 2620507 no rank 0 1 531 712710 species 0 Tannerella sp. oral taxon HOT-286 531 1 375288 11 1 genus 0 Parabacteroides 3 1183 823 species 0 Parabacteroides distasonis 1 567 605 1 0 no rank 2649774 Parabacteroides sp. CT06 0 1 605 2025876 species 1853231 1 1 family 0 Odoribacteraceae 3 732 283168 genus 1 3 Odoribacter 0 731 2 28118 species Odoribacter splanchnicus 0 728 1 171552 family 9 1 0 Prevotellaceae 5149 11 10 5140 0 Prevotella genus 50 1 838 0 Prevotella fusca 386 1 589436 species 0 1 625 2638335 no rank 1 625 0 Prevotella sp. oral taxon 299 species 652716 species 28132 474 1 0 Prevotella melaninogenica 839 species 0 Prevotella ruminicola 1 545 76123 species 0 Prevotella enoeca 284 1 1 1466 Prevotella intermedia 0 species 28131 species 52227 489 1 0 Prevotella dentalis Prevotella jejuni 0 461 1 1177574 species Prevotella denticola 0 360 1 28129 species 171551 1 2 family Porphyromonadaceae 0 4 1173 1171 3 Porphyromonas 0 1 25 genus 836 0 Porphyromonas asaccharolytica 308 1 28123 species 1 838 0 Porphyromonas gingivalis species 837 2005523 family 0 1 1640 0 1640 1 346096 genus species 185300 1 1640 Paludibacter propionicigenes 0 815 family 11 1 0 Bacteroidaceae 5990 11 816 1 53 genus Bacteroides 0 5979 10 0 Bacteroides caccae 1 517 47678 species 28113 species Bacteroides heparinolyticus 0 500 1 246787 species Bacteroides cellulosilyticus 0 1 779 28116 species 0 Bacteroides ovatus 1 685 1 780 0 Bacteroides thetaiotaomicron species 818 28119 species Bacteroides zoogleoformans 0 436 1 0 Bacteroides helcogenes 482 1 290053 species 0 Bacteroides fragilis 1 1212 817 species 1796613 species Bacteroides caecimuris 0 535 1 no rank 185291 462 1 0 0 Bacteroidales bacterium CF 1 462 1400053 species 8 3096 0 Saprospiria 7 1 class 1937959 1936988 order 1 8 Saprospirales 0 3089 7 0 Haliscomenobacteraceae 3 2125 1937961 2 1 family 2 2123 0 Haliscomenobacter genus 8 1 2349 1 2115 Haliscomenobacter hydrossis 0 species 2350 3 956 Saprospiraceae 0 family 1 2 89374 1007 genus 1 8 Saprospira 0 954 2 946 1 0 Saprospira grandis species 1008 0 Chitinophagia 17 8406 1853228 class 12 1 1853229 15 1 order 0 Chitinophagales 8394 16 563835 1 73 family Chitinophagaceae 0 15 8379 1769012 genus 1 4 Arachidicoccus 0 2 1259 1255 1 0 no rank 2636138 species 1850526 1255 1 0 Arachidicoccus sp. BS20 649460 6 1 genus 0 Filimonas 893 2 477680 species Filimonas lacunae 0 1 887 354354 genus 5 1 0 Niastella 1459 2 0 Niastella koreensis 1454 1 354356 species 398041 genus 2 1 0 Flavisolibacter 2 1430 species 1492898 1 1428 Flavisolibacter tropicus 0 genus 1 1 79328 1706 3 0 Chitinophaga 935 1 Chitinophaga pinensis 0 species 79329 species 2029983 770 1 0 Chitinophagaceae bacterium 13 0 Niabella 3 1559 379899 12 1 genus 446683 species Niabella soli 0 774 1 1176587 species Niabella ginsenosidivorans 0 1 773 class 1 76 768503 47432 62 Cytophagia 0 0 Cytophagales 61 47356 768507 172 1 order 1501348 1 11 family Amoebophilaceae 0 5 1244 2 798 Candidatus Amoebophilus 0 genus 1 2 281119 0 Candidatus Amoebophilus asiaticus 1 796 281120 species 2 435 Candidatus Cardinium 0 genus 1 2 273135 no rank 2641185 1 433 0 species 249402 433 1 0 Cardinium endosymbiont of Encarsia pergandiella 0 2458 2 2762301 family 2458 2 Marivirga 0 genus 1 16 869806 1006 species 0 Marivirga tractuosa 2442 1 4 7306 Flammeovirgaceae 0 1 10 family 200667 8 1 genus 59739 3164 2 0 Flammeovirga 2637820 no rank 0 1 3156 1 3156 0 Flammeovirga sp. MY04 species 1191459 340671 no rank 0 1 4132 species 1257021 1 4132 Flammeovirgaceae bacterium 311 0 8098 10 Cyclobacteriaceae 0 family 1 14 563798 1284 2 Algoriphagus 0 genus 1 15 246875 1727163 species 0 Algoriphagus sp. M8-2 1 1269 68288 17 1 genus 0 Cyclobacterium 3 3511 Cyclobacterium marinum 0 1630 1 104 species 320787 species Cyclobacterium amurskyense 0 1 1864 2 2249 Belliella 0 1 27 genus 232244 species 232259 2222 1 Belliella baltica 0 390846 19 1 genus 0 Echinicola 2 1040 0 Echinicola vietnamensis 1021 1 390884 species Cytophagaceae 0 17 10251 89373 1 28 family 17 1 genus 120831 2 1099 0 Dyadobacter 94254 species 0 Dyadobacter fermentans 1082 1 0 Cytophaga 2 1536 978 genus 29 1 1507 1 Cytophaga hutchinsonii 0 species 985 105 genus 5 1 0 Runella 1188 2 species 106 1183 1 0 Runella slithyformis 107 genus 1 48 Spirosoma 0 6 4658 1 931 0 Spirosoma radiotolerans species 1379870 1 784 Spirosoma rigui 0 species 564064 species 1211326 1 988 Spirosoma aerolatum 0 1004 1 Spirosoma sp. HA7 0 species 2057025 1178516 species 0 Spirosoma montaniterrae 903 1 4 1 genus 861914 773 2 0 Fibrella 2620963 no rank 0 769 1 1834519 species 0 Fibrella sp. ES10-3-2-2 769 1 Leadbetterella 0 969 2 319458 genus 1 11 species 316068 1 958 0 Leadbetterella byssophila 3 1668 0 Persicobacteraceae 3 1 family 1853234 1665 2 Persicobacter 0 1 11 genus 59740 0 1654 1 2664020 no rank Persicobacter sp. JZB09 0 1 1654 1085624 species 1853232 48 1 family 0 Hymenobacteraceae 16 12819 Rufibacter 0 4 2688 1379908 genus 1 20 2639626 no rank 0 1694 2 Rufibacter sp. DG15C 0 857 1 1379909 species 1 837 0 Rufibacter sp. DG31D species 1379910 1 974 0 Rufibacter tibetensis species 512763 Pontibacter 0 1778 3 323449 genus 1 12 931 1 Pontibacter korlensis 0 species 400092 0 Pontibacter akesuensis 835 1 388950 species 89966 genus 1 96 Hymenobacter 0 8 8305 1411621 species 0 Hymenobacter sedentarius 1 1346 species 1446467 1 1084 0 Hymenobacter swuensis 5 5779 0 no rank 2615202 0 Hymenobacter sp. DG25A 689 1 1385663 species Hymenobacter sp. APR13 0 1277 1 1356852 species Hymenobacter sp. DG25B 0 778 1 1385664 species Hymenobacter sp. PAMC 26628 0 1 1501 1484118 species Hymenobacter sp. PAMC 26554 0 1534 1 1484116 species Bernardetiaceae 0 3 3340 1937968 family 1 6 2 3334 0 Bernardetia 22 1 genus 1937972 999 species 0 Bernardetia litoralis 3312 1 1100069 order 51 1 0 Bacteroidetes Order II. Incertae sedis 7 4869 Rhodothermaceae 0 6 4818 563843 family 1 24 genus 2 1 146918 2 1056 0 Salinibacter 1 1054 Salinibacter ruber 0 species 146919 1 2096 0 no rank 1196022 1779382 species Rhodothermaceae bacterium RA 0 1 2096 0 Rhodothermus 2 1642 29548 genus 19 1 1 1623 0 Rhodothermus marinus species 29549 9574 22 0 phylum 1090 191410 35 1 class 0 Chlorobia 9574 22 82 1 order 191411 9539 21 0 Chlorobiales Chlorobiaceae 0 9457 20 191412 family 1 86 100715 1 1 genus Chloroherpeton 0 742 2 741 1 0 Chloroherpeton thalassium species 100716 2108 5 0 Prosthecochloris 90 1 genus 1101 2632826 no rank 0 1531 3 species 281093 517 1 0 Prosthecochloris sp. GSB1 Prosthecochloris sp. CIB 2401 0 514 1 1868325 species 1974213 species 0 Prosthecochloris sp. HL-130-GSB 1 500 1102 species Prosthecochloris aestuarii 0 487 1 0 Chlorobaculum 1908 4 256319 99 1 genus 1 543 0 Chlorobaculum tepidum species 1097 species 274539 1 567 0 Chlorobaculum parvum species 274537 1 699 Chlorobaculum limnaeum 0 no rank 274493 8 4613 0 0 Pelodictyon 1116 3 1099 8 1 genus 34090 species 0 Pelodictyon phaeoclathratiforme 603 1 0 Pelodictyon luteolum 505 1 1100 species 5 3497 Chlorobium 0 genus 1 62 1091 1 614 0 Chlorobium chlorochromatii species 337090 1094 species 0 Chlorobium phaeovibrioides 1 401 1795 1 Chlorobium phaeobacteroides 0 species 1096 1 625 Chlorobium limicola 0 species 1092 0 1268 5 65842 phylum Fibrobacteria 0 5 1268 204430 class 1 6 5 1 order 218872 4 1262 0 Fibrobacterales 4 1 family 204431 3 1257 0 Fibrobacteraceae 1253 2 Fibrobacter 0 1 15 genus 832 833 species Fibrobacter succinogenes 0 1 1238 456828 phylum 0 1 889 1 889 0 genus 456826 0 Candidatus Cloacimonas acidaminovorans 1 889 456827 species 1 661 phylum 1224 2818797 2058 Proteobacteria 0 960621 572 Alphaproteobacteria 0 1 1024 class 28211 2800059 order 0 1483 2 2800061 family 0 1483 2 genus 1 44 74317 2 1483 Maricaulis 0 1439 1 Maricaulis maris 0 species 74318 54526 1 38 order Pelagibacterales 0 316769 9 6 296457 Pelagibacteraceae 0 family 1 127 1655514 0 Candidatus Pelagibacter 129146 3 198251 51 1 genus 2647897 no rank 0 1 18575 1002672 species Candidatus Pelagibacter sp. IMCC9063 0 18575 1 110520 1 Candidatus Pelagibacter ubique 0 species 198252 2 167184 0 no rank 1655516 21873 1 alpha proteobacterium HIMB59 0 species 744985 alpha proteobacterium HIMB5 0 1 145311 859653 species 1 49 genus 2045213 20274 2 Candidatus Fonsibacter 0 0 Candidatus Fonsibacter ubiquis 1 20225 1925548 species 255473 1 3 order Parvularculales 0 4 1247 0 Parvularculaceae 3 1244 255474 5 1 family 60 1 genus 208215 1239 2 0 Parvularcula 1179 1 0 Parvularcula bermudensis species 208216 Holosporales 0 9 4628 1921002 1 10 order Caedimonadaceae 0 1677 3 2100208 family 1 6 1509243 genus 6 1 0 Candidatus Nucleicultrix 2 1671 1509244 species 0 Candidatus Nucleicultrix amoebiphila 1 1665 1777752 family 11 1 0 Candidatus Paracaedibacteraceae 1344 3 genus 5 1 1521255 1333 2 0 Candidatus Paracaedibacter 1 1328 0 Candidatus Paracaedibacter acanthamoebae species 91604 44746 family 1 3 Holosporaceae 0 1597 2 1 1594 0 no rank 204454 86106 species endosymbiont of Acanthamoeba sp. UWC8 0 1 1594 204455 392 1 order 0 Rhodobacterales 118690 93 1693 1 family 31989 92 118298 0 Rhodobacteraceae genus 10 1 74030 1617 2 0 Roseovarius 215743 species 0 Roseovarius mucosus 1607 1 2 1544 Antarctobacter 0 genus 1 2 74032 0 Antarctobacter heliothermus 1542 1 74033 species Labrenzia 0 4 5329 478070 1 134 genus 2648686 no rank 0 2 3458 1674922 species 0 Labrenzia sp. CP4 1 1626 species 2021862 1832 1 Labrenzia sp. VG12 0 1737 1 0 Labrenzia aggregata species 187304 genus 10 1 60136 3912 3 0 Sulfitobacter Sulfitobacter pseudonitzschiae 0 1 1782 1402135 species 1 2120 0 no rank 196795 1917485 species Sulfitobacter sp. AM1-D1 0 1 2120 1 11 genus 159345 1869 2 Roseibacterium 0 159346 species Roseibacterium elongatum 0 1858 1 34008 87 1 genus 0 Rhodovulum 7106 4 Rhodovulum sulfidophilum 0 1 3256 35806 species no rank 2631432 2 3763 0 species 308754 2044 1 0 Rhodovulum sp. MB263 species 1564506 1 1719 0 Rhodovulum sp. P5 12 1 genus 309512 2038 2 0 Dinoroseobacter species 215813 1 2026 Dinoroseobacter shibae 0 2 4742 0 genus 263377 0 Thiobacimonas profunda 2547 1 1229727 species 2640570 no rank 0 1 2195 2195 1 Yangia sp. CCB-MM3 0 species 1792508 1900 2 Pannonibacter 0 genus 1 39 227873 species 121719 1861 1 Pannonibacter phragmitetus 0 genus 52 1 53945 4 4657 0 Octadecabacter 2456 1 0 Octadecabacter antarcticus species 1217908 53946 species 0 Octadecabacter arcticus 1 1190 1458307 species Octadecabacter temperatus 0 959 1 285107 genus 1 18 Thioclava 0 1530 2 Thioclava nitratireducens 0 1 1512 1915078 species 2433 genus 13 1 0 Roseobacter 3 3073 42443 species 0 Roseobacter litoralis 1 1547 2434 species 0 Roseobacter denitrificans 1 1513 genus 1284657 1 1683 0 0 Planktomarina temperata 1 1683 1284658 species 1090 2 Rhodobaca 0 genus 1 3 119541 species 441209 1087 1 0 Rhodobaca barguzinensis Thalassococcus 0 1 12 436357 genus 367771 1 26 genus Marinovum 0 2981 2 1 2955 Marinovum algicola 0 species 42444 2042 2 Defluviimonas 0 1 12 genus 1097466 1335048 species Defluviimonas alba 0 1 2030 2100 3 Ketogulonicigenium 0 genus 1 25 92944 92947 species 0 Ketogulonicigenium robustum 949 1 92945 species Ketogulonicigenium vulgare 0 1 1126 Ruegeria 0 3 4222 97050 1 33 genus no rank 2625375 1405 1 0 Ruegeria sp. TM1040 0 1405 1 292414 species species 89184 2784 1 0 Ruegeria pomeroyi 188905 4 1 genus 0 Jannaschia 1663 2 1 1659 0 no rank 2645469 species 290400 1 1659 0 Jannaschia sp. CCS1 191028 7 1 genus 0 Leisingera 2159 2 2152 1 Leisingera methylohalidivorans 0 species 133924 2 1762 0 Tateyamaria genus 1 1 299261 1761 1 0 Tateyamaria omphalii species 299262 0 Confluentimicrobium 2 2111 1609958 genus 14 1 0 1 2097 2643318 no rank Confluentimicrobium sp. EMB200-NS6 0 1 2097 1609966 species no rank 58840 2 2391 0 0 Rhodobacteraceae bacterium QY30 1349 1 2033435 species species 1904441 1042 1 Rhodobacteraceae bacterium 0 genus 1649279 1425 1 0 species 379347 1 1425 Ruegeria mobilis 0 0 Rhodobacter 10190 5 1060 103 1 genus Rhodobacter capsulatus 0 1660 1 1061 species 0 2 3870 196779 no rank 1 1957 0 Rhodobacter sp. CZR27 species 2033869 species 1850250 1 1913 Rhodobacter sp. LPB0142 0 1063 species Rhodobacter sphaeroides 0 1 4557 Loktanella 0 8 1 245186 genus 0 Paracoccus 9 13639 265 184 1 genus 1235 1 Paracoccus contaminans 0 species 1945662 1 1672 0 Paracoccus aminovorans species 34004 2197 1 Paracoccus yeei 0 species 147645 species 34003 1203 1 Paracoccus aminophilus 0 0 1588 1 246570 no rank 1529068 species Paracoccus sp. BM15 0 1 1588 species 266 1 2053 Paracoccus denitrificans 0 1 1913 0 Paracoccus zhejiangensis species 1077935 2065379 species 0 Paracoccus sp. CBA4604 1594 1 genus 1 21 360528 2 2753 Pelagibaca 0 species 1250539 1 2732 Pelagibaca abyssi 0 2 1 genus 1759396 2 927 0 Marivivens 925 1 0 no rank 2622455 1 925 0 Marivivens sp. JLT3646 species 1920883 0 Phaeobacter 12024 5 302485 genus 138 1 1844006 species Phaeobacter porticola 0 1255 1 60890 species 0 Phaeobacter gallaeciensis 3421 1 1580596 species 0 Phaeobacter piscinae 1 2784 1 4426 Phaeobacter inhibens 0 species 221822 1 51 genus 875170 5 6920 Celeribacter 0 0 Celeribacter manganoxidans 1 1901 1411902 species 1054 1 Celeribacter marinus 0 species 1397108 1 2621 0 Celeribacter indicus species 1208324 1293 1 0 Celeribacter ethanolicus species 1758178 genus 2 1 1579315 1182 2 0 Halocynthiibacter Halocynthiibacter arcticus 0 1 1180 1579316 species 2 2384 0 Sagittula genus 6 1 58842 no rank 2624628 1 2378 0 0 Sagittula sp. P11 1 2378 2009329 species 2211641 genus 0 1620 1 species 245188 1620 1 Loktanella vestfoldensis 0 84124 82 Sphingomonadales 0 order 1 404 204457 Erythrobacteraceae 0 22 17354 335929 1 209 family 361177 genus 1 202 Altererythrobacter 0 4 2501 Altererythrobacter epoxidivorans 0 1 773 361183 species 476157 species 0 Altererythrobacter ishigakiensis 733 1 species 1267766 793 1 Altererythrobacter atlanticus 0 genus 2800681 2256 2 0 species 1648404 1100 1 0 Erythrobacter atlanticus 1 1156 0 Erythrobacter gangjinensis species 502682 genus 2800685 681 1 0 1 681 0 Altererythrobacter marensis species 543877 0 987 1 2800682 genus species 645517 987 1 0 Altererythrobacter namhicola 1 72 genus 1295327 2223 3 Croceicoccus 0 Croceicoccus naphthovorans 0 1 841 1348774 species 1310 1 Croceicoccus marinus 0 species 450378 0 1624 2 2800686 genus species 692370 1 858 0 Altererythrobacter dongtanensis Altererythrobacter mangrovi 0 766 1 1982042 species no rank 2800788 6 5447 0 Porphyrobacter 0 3 2246 1111 1 86 genus 2683265 no rank 0 2160 2 species 2023229 1014 1 Porphyrobacter HT-58-2 0 1146 1 0 Porphyrobacter sp. LM 6 species 1896196 1 205 genus 1041 3 3201 Erythrobacter 0 982 1 0 Porphyrobacter neustonensis species 1112 Erythrobacter litoralis 0 2014 1 39960 species genus 1855416 1426 2 0 Erythrobacter flavus 0 863 1 192812 species 0 Erythrobacter seohaensis 563 1 266951 species 41297 family 1 719 Sphingomonadaceae 0 59 66366 2685927 genus 0 1 1038 Sphingomonas sp. JJ-A5 0 1 1038 1921510 species Zymomonas 0 1672 2 541 1 2 genus 1670 1 0 Zymomonas mobilis species 542 Sphingorhabdus 0 2100 3 1434046 genus 1 52 no rank 2614947 2 2048 0 1806885 species 0 Sphingorhabdus sp. M41 1020 1 species 2077182 1 1028 Sphingorhabdus sp. YGSMI21 0 165696 genus 1 115 Novosphingobium 0 5356 5 1 1256 Novosphingobium pentaromativorans 0 species 205844 no rank 2644732 1229 1 0 702113 species Novosphingobium sp. PP1Y 0 1229 1 0 Novosphingobium resinovorum 1673 1 158500 species 48935 species Novosphingobium aromaticivorans 0 1083 1 13687 536 1 genus 0 Sphingomonas 23629 15 no rank 196159 6 8506 0 species 745310 1 1409 Sphingomonas sp. MM-1 0 1 1286 Sphingomonas sp. Cra20 0 species 1327635 Sphingomonas sp. LM7 0 1153 1 1938607 species 1961362 species 0 Sphingomonas sp. NIC1 1 1084 1390395 species Sphingomonas sp. LK11 0 2561 1 1 1013 Sphingomonas sp. KC8 0 species 1030157 1 2022 Sphingomonas sanxanigenens 0 species 397260 1487 1 0 Sphingomonas hengshuiensis species 1609977 160791 species 1 2395 Sphingomonas wittichii 0 4829 2 1283312 strain 0 Sphingomonas sp. DC-6 2434 1 1 1410 0 Sphingomonas taxi species 1549858 species 1560345 1 1384 0 Sphingomonas panacis 93064 species Sphingomonas koreensis 0 2193 1 152682 species Sphingomonas melonis 0 1 1262 1649486 genus 1 19 Rhizorhabdus 0 1576 2 species 1850238 1 1557 Rhizorhabdus dicambivorans 0 165697 genus 1 272 Sphingopyxis 0 12490 10 1 1433 Sphingopyxis granuli 0 species 267128 0 5200 4 2614943 no rank 1357916 species Sphingopyxis sp. QXT-31 0 1 1471 1866325 species 0 Sphingopyxis sp. MG 1 1455 0 Sphingopyxis sp. LPB0140 1296 1 1913578 species Sphingopyxis sp. 113P3 0 978 1 292913 species species 33052 1 1104 0 Sphingopyxis terrae Sphingopyxis fribergensis 0 1127 1 1515612 species 1 2351 0 Sphingopyxis macrogoltabida species 33050 0 Sphingopyxis alaskensis 1 1003 117207 species Blastomonas 0 2 1390 150203 1 16 genus 2626550 no rank 0 1 1374 1374 1 0 Blastomonas sp. RAC04 species 1842535 0 996 1 2709685 genus species 266812 996 1 0 Sphingorhabdus flavimaris Sphingobium 0 15 14353 165695 genus 1 417 Sphingobium chlorophenolicum 0 988 1 46429 species 6 5772 0 no rank 2611147 1843368 species Sphingobium sp. RAC03 0 1 876 0 Sphingobium sp. EP60837 1 764 1855519 species 1315974 species Sphingobium sp. TKS 0 1132 1 1 885 Sphingobium sp. MI1205 0 species 407020 Sphingobium sp. YBL2 0 1039 1 484429 species species 627192 1076 1 Sphingobium sp. SYK-6 0 1013 1 0 Sphingobium cloacae species 120107 species 1332080 1 784 Sphingobium baderi 0 1673076 species 0 Sphingobium hydrophobicum 973 1 0 Sphingobium yanoikuyae 1 1706 13690 species 76947 species Sphingobium herbicidovorans 0 747 1 0 Sphingobium japonicum 1019 1 332056 species species 332055 934 1 Sphingobium indicum 0 22 1 genus 72173 2 1047 0 Citromicrobium 1 1025 0 no rank 2630544 1 1025 0 Citromicrobium sp. JL477 species 1634516 204441 order 1 539 Rhodospirillales 0 76695 67 599 1 family 41295 49378 31 0 Rhodospirillaceae Niveispirillum 0 1764 2 1543704 genus 1 24 species 1612173 1740 1 0 Niveispirillum cyanobacteriorum 1182780 23 1 genus 0 Magnetospira 1884 2 2685734 no rank 0 1861 1 species 1288970 1861 1 0 Magnetospira sp. QH-2 16272 5 Azospirillum 0 1 328 genus 191 1 5293 Azospirillum brasilense 0 species 192 1 3469 Azospirillum thiophilum 0 species 528244 Azospirillum humicireducens 0 1612 1 1226968 species 193 species 0 Azospirillum lipoferum 5570 1 Thalassospira 0 3601 3 168934 1 65 genus species 2048283 1748 1 0 Thalassospira sp. CSC3H3 220697 species 0 Thalassospira xiamenensis 1 1788 genus 1 26 1612157 2 1353 Pararhodospirillum 0 1084 species Pararhodospirillum photometricum 0 1327 1 2575 2 Nitrospirillum 0 1 13 genus 1543705 Nitrospirillum amazonense 0 1 2562 28077 species Rhodospirillum 0 4035 3 1081 genus 1 77 1 1823 0 Rhodospirillum rubrum species 1085 34018 species Rhodospirillum centenum 0 2135 1 genus 1 249 13134 10395 5 Magnetospirillum 0 Magnetospirillum magneticum 0 2534 1 84159 species species 55518 1 2851 0 Magnetospirillum gryphiswaldense 4761 2 0 no rank 2617991 0 Magnetospirillum sp. ME-1 1 2390 1639348 species 1663591 species 0 Magnetospirillum sp. XM-1 1 2371 2 3188 Candidatus Endolissoclinum 0 1 14 genus 1263978 1263979 species Candidatus Endolissoclinum faulkneri 0 3174 1 1804663 genus 11 1 0 Haematospirillum 841 2 Haematospirillum jordaniae 0 1 830 1549855 species genus 46 1 171436 2 2871 0 Tistrella species 171437 1 2825 Tistrella mobilis 0 433 258 1 family 0 Acetobacteraceae 26778 35 0 Komagataeibacter 5 4127 1434011 genus 92 1 883 1 Komagataeibacter medellinensis 0 species 1177712 Komagataeibacter europaeus 0 720 1 33995 species species 28448 1375 1 Komagataeibacter xylinus 0 1057 1 0 Komagataeibacter nataicola species 265960 3659 3 0 Acidiphilium genus 104 1 522 1782 1 Acidiphilium multivorum 0 species 62140 524 species 0 Acidiphilium cryptum 1 1773 1 21 genus 364409 2 1704 Granulibacter 0 1683 1 0 Granulibacter bethesdensis species 364410 125216 1 77 genus Roseomonas 0 4099 3 1969 1 0 no rank 2617492 2018065 species 0 Roseomonas sp. FDAARGOS_362 1969 1 2053 1 Roseomonas gilardii 0 species 257708 562 2 Parasaccharibacter 0 genus 1 5 1602345 0 Parasaccharibacter apium 557 1 1510841 species 0 Acetobacter 7048 8 434 genus 89 1 1 2499 Acetobacter pasteurianus 0 species 438 0 Acetobacter pomorum 553 1 65959 species species 446692 1 726 Acetobacter senegalensis 0 species 104102 1207 1 0 Acetobacter tropicalis species 1076596 1 742 Acetobacter persici 0 0 Acetobacter oryzifermentans 672 1 1633874 species 151157 subgenus 0 560 1 species 435 560 1 0 Acetobacter aceti 320496 genus 17 1 0 Neoasaia 2 679 species 320497 662 1 Neoasaia chiangmaiensis 0 genus 1 4 91914 2 713 Asaia 0 0 Asaia bogorensis 709 1 91915 species genus 12 1 153497 2 829 0 Kozakia 153496 species 0 Kozakia baliensis 1 817 Gluconacetobacter 0 1294 2 89583 1 25 genus 33996 species 0 Gluconacetobacter diazotrophicus 1 1269 1806 3 0 Gluconobacter genus 20 1 441 0 Gluconobacter oxydans 1 1203 442 species 318683 species 0 Gluconobacter albidus 1 583 no rank 82117 8 11360 0 clade 62654 5283 2 0 0 Candidatus Puniceispirillum 2 5283 767891 genus 13 1 0 Candidatus Puniceispirillum marinum 1 5270 767892 species 1 8 genus 213485 2 1276 Micavibrio 0 1 1268 Micavibrio aeruginosavorus 0 species 349221 1632780 1 71 genus Phreatobacter 0 2260 2 1868589 species Phreatobacter sp. S-12 0 1 2189 genus 1 109 991903 2541 2 Polymorphum 0 species 991904 2432 1 Polymorphum gilvum 0 0 Magnetococcales 1112 4 1191478 9 1 order 1191479 family 1 7 Magnetococcaceae 0 1103 3 genus 1 16 162171 2 1096 Magnetococcus 0 0 Magnetococcus marinus 1 1080 1124597 species 212 270468 0 Rhizobiales 1643 1 order 356 family 108 1 119045 15 30197 0 Methylobacteriaceae 1 708 genus 407 9 16902 Methylobacterium 0 species 334852 1 1692 Methylobacterium oryzae 0 0 Methylobacterium phyllosphaerae 1 1692 418223 species 0 Methylobacterium nodulans 2150 1 114616 species 2615210 no rank 0 3 6158 0 Methylobacterium sp. 4-46 1 2770 426117 species species 925818 1502 1 Methylobacterium sp. AMS5 0 Methylobacterium sp. C1 0 1 1886 1479019 species 0 Methylobacterium radiotolerans 1966 1 31998 species 0 Methylobacterium aquaticum 2536 1 270351 species 0 Microvirga 1907 2 186650 genus 22 1 1882682 species 0 Microvirga ossetica 1885 1 2282523 genus 0 3 11280 1484 1 Methylobacterium zatmanii 0 species 29429 408 species 0 Methylobacterium extorquens 6683 1 0 Methylobacterium populi 3113 1 223967 species 7 6125 0 Xanthobacteraceae family 54 1 335928 152053 73 1 genus 0 Starkeya 2 2064 Starkeya novella 0 1 1991 921 species 23 1 genus 6 1803 2 0 Azorhizobium 7 species Azorhizobium caulinodans 0 1 1780 279 genus 25 1 0 Xanthobacter 2 2204 280 species 0 Xanthobacter autotrophicus 2179 1 20 8278 Brucellaceae 0 family 1 38 118882 528 88 1 genus 0 Ochrobactrum 4422 5 529 species Ochrobactrum anthropi 0 1022 1 Ochrobactrum sp. A44 0 969 1 271865 species 419475 species 0 Ochrobactrum pseudogrignonense 1 1037 571256 species 0 Ochrobactrum pituitosum 1 1306 0 Brucella 3818 14 234 1187 1 genus 0 Brucella abortus 1 178 235 species species 120577 203 1 0 Brucella ceti 444163 species 0 Brucella microti 1 78 0 Brucella vulpis 1 263 981386 species 29459 species 0 Brucella melitensis 1 154 Brucella pinnipedialis 0 1 242 120576 species 0 Brucella suis 222 1 29461 species 1 240 Brucella canis 0 species 36855 65 1 0 Brucella ovis species 236 0 986 4 2632610 no rank species 1844051 1 361 Brucella sp. 09RB8910 0 1 94 0 Brucella sp. 2002734562 species 1891098 species 1885919 1 251 Brucella sp. 141012304 0 1149952 species 0 Brucella sp. 09RB8471 1 280 Rhizobiaceae 0 55 75586 82115 1 492 family no rank 227290 36 47310 0 11227 7 Agrobacterium 0 1 159 genus 357 no rank 2632611 2425 2 0 0 Agrobacterium sp. RAC06 1 1490 1842536 species 861208 species 0 Agrobacterium sp. H13-3 1 935 1 1084 Agrobacterium rhizogenes 0 species 359 Agrobacterium vitis 0 1139 1 373 species 0 6420 2 1183400 species group species 1176649 1 993 0 Agrobacterium fabrum 1 5427 Agrobacterium tumefaciens 0 species 358 Neorhizobium 0 2 2324 1525371 genus 1 27 2297 1 0 Neorhizobium galegae species 399 379 1 2154 genus Rhizobium 0 33759 27 396 species Rhizobium phaseoli 0 2705 1 2613769 no rank 0 13773 21 2020312 species Rhizobium sp. CIAT894 0 1 1129 Rhizobium sp. 10195 0 1 1206 2028343 species Rhizobium sp. IE4771 0 1 1049 1301032 species 1260 1 Rhizobium sp. N324 0 species 1703969 species 1703966 225 1 0 Rhizobium sp. N731 9 1 Rhizobium sp. N1341 0 species 1703962 843 1 0 Rhizobium sp. Y9 species 1914541 species 1703961 225 1 Rhizobium sp. N1314 0 0 Rhizobium sp. ACO-34A 1 1355 1571470 species 1061 1 0 Rhizobium sp. Kim5 species 2020311 species 424182 1 1046 Rhizobium sp. IRBG74 0 1869170 species 0 Rhizobium sp. S41 1 925 species 1703960 8 1 Rhizobium sp. N113 0 Rhizobium sp. NXC14 0 1 944 1981173 species species 1703967 10 1 0 Rhizobium sp. N741 species 1703968 1 8 0 Rhizobium sp. N871 0 Rhizobium sp. N6212 2 1 1703965 species species 1125847 1129 1 0 Rhizobium sp. NT-26 1 2 0 Rhizobium sp. N621 species 1703964 species 2048897 1 1086 Rhizobium sp. NXC24 0 251 1 Rhizobium sp. TAL182 0 species 2020313 0 Rhizobium etli 4014 1 29449 species 1941 1 Rhizobium gallicum 0 species 56730 0 Rhizobium leguminosarum 8045 1 384 species 0 Rhizobium tropici 1127 1 398 species Liberibacter 0 7816 6 34019 1 137 genus 0 Candidatus Liberibacter americanus 1772 1 309868 species 0 Candidatus Liberibacter africanus 1318 1 34020 species 0 Candidatus Liberibacter solanacearum 1396 1 556287 species 1 1916 0 Liberibacter crescens species 1273132 species 34021 1 1277 0 Candidatus Liberibacter asiaticus no rank 227292 10 17515 0 Ensifer 0 3 2988 106591 1 37 genus species 106592 1618 1 Ensifer adhaerens 0 716925 species 0 Ensifer sojae 1333 1 28105 genus 236 1 0 Sinorhizobium 14527 7 3404 2 0 no rank 2613772 1749 1 0 Sinorhizobium sp. RAC02 species 1842534 1 1655 0 Sinorhizobium sp. CCBAU 05631 species 794846 194963 species Sinorhizobium americanum 0 1712 1 0 Sinorhizobium medicae 1 1233 110321 species 4507 1 0 species group 663276 1 4507 Sinorhizobium fredii 0 species 380 species 382 1 3435 0 Sinorhizobium meliloti Shinella 0 2453 2 323620 1 23 genus 0 2430 1 2643062 no rank species 879274 1 2430 Shinella sp. HZN7 0 168 1 family 69277 24932 20 0 Phyllobacteriaceae 2 1716 Hoeflea 0 genus 1 33 274591 1683 1 0 no rank 2614931 1683 1 0 Hoeflea sp. IMCC20628 species 1620421 28100 genus 1 28 Phyllobacterium 0 2 1226 1867719 species 0 Phyllobacterium zundukense 1198 1 31988 1 42 genus Aminobacter 0 2033 2 83263 species Aminobacter aminovorans 0 1991 1 68287 genus 1 627 Mesorhizobium 0 17281 9 species 1670800 1 2078 Mesorhizobium sp. B7 0 1 2014 Mesorhizobium loti 0 species 381 39645 species Mesorhizobium ciceri 0 1 2498 325217 no rank 0 1 2105 2105 1 Mesorhizobium sp. WSM1497 0 species 278153 species 593909 1 2018 Mesorhizobium opportunistum 0 Mesorhizobium australicum 0 1 1860 536018 species species 2066070 1888 1 Mesorhizobium japonicum 0 Mesorhizobium amorphae 0 1 2193 71433 species Nitratireductor 0 2 1374 245876 1 35 genus species 472175 1 1339 Nitratireductor basaltis 0 Chelativorans 0 2 1134 449972 genus 1 31 1103 1 0 no rank 2643807 species 266779 1103 1 Chelativorans sp. BNC1 0 family 15 1 45404 2612 5 0 Beijerinckiaceae 2 1334 0 Beijerinckia genus 18 1 532 species 533 1 1316 0 Beijerinckia indica 2 1263 Methylocella 0 1 31 genus 120652 1 1232 0 Methylocella silvestris species 199596 Aurantimonadaceae 0 7 6586 255475 family 1 23 Aureimonas 0 1703 2 414371 genus 1 49 0 1654 1 2615206 no rank 1654 1 0 Aureimonas sp. AU20 species 1349819 Martelella 0 4860 4 293088 1 104 genus 1486262 species 0 Martelella endophytica 1350 1 1 1786 Martelella mediterranea 0 species 293089 0 1 1620 2629616 no rank 1620 1 Martelella sp. AD-3 0 species 686597 no rank 119042 6 5194 0 1572860 genus 1 57 Hartmannibacter 0 2075 2 1 2018 0 Hartmannibacter diazotrophicus species 1482074 35 1 genus 1484898 2 1480 0 Methyloceanibacter species 1384459 1 1445 0 Methyloceanibacter caenitepidi genus 1 34 1734920 1639 2 Pseudorhodoplanes 0 1605 1 Pseudorhodoplanes sinuspersici 0 species 1235591 51275 26 Bradyrhizobiaceae 0 family 1 379 41294 1649510 1 17 genus Variibacter 0 1484 2 1467 1 0 Variibacter gotjawalensis species 1333996 85413 1 245 genus Bosea 0 8177 5 2153 1 0 Bosea vaviloviae species 1526658 0 3 5779 2653178 no rank species 2015316 1 1965 Bosea sp. AS-1 0 Bosea sp. RAC05 0 1 2170 1842539 species species 1792307 1644 1 Bosea sp. PAMC 26642 0 1 16 genus 40136 2 1323 Oligotropha 0 40137 species Oligotropha carboxidovorans 0 1 1307 11994 2 Rhodopseudomonas 0 1 95 genus 1073 Rhodopseudomonas palustris 0 11899 1 1076 species Bradyrhizobium 0 11 25782 374 1 724 genus 1869 1 Bradyrhizobium icense 0 species 1274631 1 2261 0 Bradyrhizobium oligotrophicum species 44255 0 13722 6 2631580 no rank 115808 species Bradyrhizobium sp. ORS 285 0 1 2157 114615 species 0 Bradyrhizobium sp. ORS 278 2436 1 2296 1 0 Bradyrhizobium sp. BTAi1 species 288000 Bradyrhizobium sp. SK17 0 2465 1 2057741 species 1223566 species Bradyrhizobium sp. CCGE-LA001 0 1 2092 2276 1 0 Bradyrhizobium sp. species 376 1355477 species Bradyrhizobium diazoefficiens 0 3685 1 species 375 3521 1 0 Bradyrhizobium japonicum 43 1 genus 911 2136 3 0 Nitrobacter species 913 1 915 0 Nitrobacter winogradskyi 1178 1 Nitrobacter hamburgensis 0 species 912 2036754 1 18 family Chelatococcaceae 0 4425 4 Chelatococcus 0 4407 3 28209 genus 1 149 0 1 2384 2638111 no rank Chelatococcus sp. CO-6 0 2384 1 1702325 species Chelatococcus daeguensis 0 1874 1 444444 species family 1 4 119043 2061 3 Rhodobiaceae 0 2057 2 Parvibaculum 0 genus 1 31 256616 256618 species 0 Parvibaculum lavamentivorans 2026 1 19 17362 Hyphomicrobiaceae 0 1 121 family 45401 genus 25 1 1082930 2 1142 0 Pelagibacterium 0 Pelagibacterium halotolerans 1117 1 531813 species 1 24 genus 1068 1142 2 Rhodomicrobium 0 1 1118 0 Rhodomicrobium vannielii species 1069 genus 1 15 119044 955 2 Filomicrobium 0 1 940 Candidatus Filomicrobium marinum 0 species 1608628 2 2229 Rhodoplanes 0 1 37 genus 29407 0 2192 1 2619116 no rank 1 2192 Rhodoplanes sp. Z2-YC6860 0 species 674703 genus 1 35 59282 1655 2 Blastochloris 0 Blastochloris viridis 0 1 1620 1079 species genus 1 133 46913 4 4892 Devosia 0 0 3 4759 196773 no rank 1 1225 Devosia sp. I507 0 species 2083786 species 1736675 1945 1 0 Devosia sp. A16 species 1643450 1 1589 0 Devosia sp. H5989 Hyphomicrobium 0 4 5226 81 genus 1 174 2239 1 0 no rank 2619925 717785 species Hyphomicrobium sp. MC1 0 2239 1 53399 species Hyphomicrobium denitrificans 0 1 1696 species 1427356 1117 1 Hyphomicrobium nitrativorans 0 772 family 1 33 Bartonellaceae 0 29765 18 Bartonella 0 29732 17 773 1 605 genus 1877 1 0 Bartonella bacilliformis species 774 33045 species Bartonella grahamii 0 1 1894 1 1829 Bartonella apis 0 species 1686310 1 1803 0 Bartonella vinsonii species 33047 no rank 2645622 12022 6 0 0 Bartonella sp. 1-1C 1956 1 515256 species Bartonella sp. Raccoon60 0 1954 1 1933912 species 0 Bartonella sp. JB15 1 2005 1933906 species 1933910 species Bartonella sp. A1379B 0 1 1947 1933904 species 0 Bartonella sp. WD16.2 2156 1 2004 1 0 Bartonella sp. JB63 species 1933907 0 Bartonella henselae 1 1721 38323 species 1867 1 Bartonella tribocorum 0 species 85701 species 1318743 1 1673 0 Bartonella ancashensis 56426 species 0 Bartonella clarridgeiae 2028 1 388640 species Bartonella australis 0 1128 1 803 species Bartonella quintana 0 1285 1 6 4427 0 Methylocystaceae family 36 1 31993 425 10 1 genus 0 Methylosinus 1936 2 426 species Methylosinus trichosporium 0 1 1926 3 2455 0 Methylocystis genus 53 1 133 1 1264 0 Methylocystis bryophila species 655015 no rank 2625913 1 1138 0 Methylocystis sp. SC2 0 1138 1 187303 species 2800060 order 0 4268 6 69657 family 58 1 0 Hyphomonadaceae 6 4268 1970 2 0 Hirschia 18 1 genus 2723 1952 1 Hirschia baltica 0 species 2724 1 54 genus 85 3 2240 Hyphomonas 0 no rank 2630699 1104 1 0 1104 1 0 Hyphomonas sp. Mor2 species 1906738 81032 species Hyphomonas neptunium 0 1082 1 Caulobacterales 0 21370 20 204458 order 1 112 19 21258 Caulobacteraceae 0 family 1 285 76892 20 genus 1 20 Phenylobacterium 0 2 2114 species 284016 1 2094 0 Phenylobacterium zucineum 0 Caulobacter 9723 6 75 genus 262 1 155892 species Caulobacter vibrioides 0 2829 1 0 Caulobacter mirabilis 1 1817 69666 species 1 1608 0 Caulobacter segnis species 88688 no rank 2648921 1891 1 0 species 366602 1891 1 Caulobacter sp. K31 0 69395 species 0 Caulobacter henricii 1 1316 76890 1 14 genus Asticcacaulis 0 946 2 Asticcacaulis excentricus 0 1 932 78587 species no rank 81440 919 1 0 0 Caulobacteraceae bacterium OTSz_A_272 1 919 1759059 species 275 1 genus 41275 7271 7 0 Brevundimonas species 41276 1 1031 Brevundimonas vesicularis 0 Brevundimonas subvibrioides 0 1 1244 74313 species 588932 species 0 Brevundimonas naejangsanensis 1 1099 0 3 3622 2622653 no rank species 1938605 1 1549 0 Brevundimonas sp. LM2 0 Brevundimonas sp. GW460-12-10-14-LB2 1005 1 1827469 species 1 1068 0 Brevundimonas sp. DS20 species 1532555 766 49 1 order 0 Rickettsiales 55 47383 no rank 1699067 3324 1 0 0 Rickettsiales bacterium Ac37b 1 3324 1528098 species 942 1 43 family Anaplasmataceae 0 23375 23 Anaplasma 0 1357 4 768 1 16 genus 0 Anaplasma marginale 1 380 770 species 383 1 Anaplasma centrale 0 species 769 species group 106179 1 578 0 578 1 Anaplasma phagocytophilum 0 species 948 952 tribe 0 8 10108 953 1 289 genus Wolbachia 0 10108 8 7 9819 0 no rank 2640676 0 Wolbachia endosymbiont of Brugia malayi 1 1146 80849 species species 77038 1 2732 0 Wolbachia endosymbiont of Drosophila simulans 1 1242 0 Wolbachia sp. wRi species 66084 0 Wolbachia endosymbiont of Drosophila melanogaster 1 1218 163164 species species 77551 1186 1 0 Wolbachia endosymbiont of Onchocerca volvulus 100901 species Wolbachia endosymbiont of Onchocerca ochengi 0 1 1223 1072 1 0 Wolbachia endosymbiont of Cimex lectularius species 246273 943 genus 83 1 0 Ehrlichia 6 10030 no rank 106181 1748 1 0 Ehrlichia sp. HF 0 1 1748 391036 species 0 8199 4 106178 species group 945 species Ehrlichia chaffeensis 0 1856 1 0 Ehrlichia canis 2202 1 944 species 1 1894 Ehrlichia muris 0 species 35795 species 779 1 2247 0 Ehrlichia ruminantium 4 1837 0 Neorickettsia 21 1 genus 33993 Neorickettsia sennetsu 0 1 595 951 species species 33994 1 624 0 Neorickettsia helminthoeca 950 species 0 Neorickettsia risticii 597 1 775 45 1 family 0 Rickettsiaceae 27 19241 33988 tribe 0 17840 24 23 15304 Rickettsia 0 1 1275 genus 780 114292 species group 0 2 3384 1 1645 Rickettsia prowazekii 0 species 782 785 species 0 Rickettsia typhi 1 1739 species group 114277 17 6047 0 Rickettsia felis 0 958 1 42862 species species 787 1082 1 0 Rickettsia australis 1 367 0 Rickettsia amblyommatis species 33989 0 Rickettsia philipii 1 121 1105106 species 226665 species Rickettsia heilongjiangensis 0 170 1 0 Rickettsia conorii 145 1 781 species species 33991 164 1 0 Rickettsia montanensis Rickettsia peacockii 0 1 572 47589 species 135 1 Rickettsia parkeri 0 species 35792 species 786 1 689 0 Rickettsia akari 783 species 0 Rickettsia rickettsii 1 165 species 33992 291 1 Rickettsia rhipicephali 0 species 35788 1 106 Rickettsia africae 0 109232 species 0 Rickettsia monacensis 1 695 Rickettsia massiliae 0 163 1 35791 species species 35794 65 1 0 Rickettsia slovaca Rickettsia japonica 0 159 1 35790 species 1 1660 0 no rank 114295 337479 species 0 Rickettsia endosymbiont of Bemisia tabaci 1660 1 1129742 species group 0 2938 2 33990 species 0 Rickettsia bellii 1 1775 788 species Rickettsia canadensis 0 1163 1 genus 69474 1 2536 0 2536 1 Orientia tsutsugamushi 0 species 784 2115980 1 4 genus Candidatus Phycorickettsia 0 1356 2 species 2115978 1 1352 Candidatus Phycorickettsia trachydisci 0 1328881 family 11 1 0 Candidatus Midichloriaceae 3 1394 32 1 genus 411566 2 1383 0 Candidatus Midichloria Candidatus Midichloria mitochondrii 0 1 1351 234827 species 483 1 class 28216 353 457410 0 Betaproteobacteria Rhodocyclales 0 22 21479 206389 1 231 order Azonexaceae 0 3 1302 2008795 1 20 family 73029 genus 1 15 Dechloromonas 0 2 1282 1 1267 Dechloromonas aromatica 0 species 259537 family 1 231 2008794 15703 12 Zoogloeaceae 0 0 Thauera 8404 6 33057 181 1 genus 1 1600 Thauera chlorobenzoica 0 species 96773 2609274 no rank 0 2 3644 85643 species 0 Thauera sp. MZ1T 1903 1 1741 1 Thauera sp. K11 0 species 2005884 59405 species Thauera aromatica 0 1 1402 1134435 species 0 Thauera humireducens 1577 1 12960 genus 1 154 Azoarcus 0 7068 5 1539 1 Azoarcus sp. SY39 0 species 2067960 418699 species 0 Azoarcus olearius 1 1588 no rank 2629479 3787 2 0 198107 species 0 Azoarcus sp. CIB 1 1925 1862 1 Azoarcus sp. KH32C 0 species 748247 family 1 72 75787 6 4243 Rhodocyclaceae 0 75788 no rank 0 1 993 993 1 Rhodocyclaceae bacterium 0 species 1898103 146937 genus 1 20 Azospira 0 1658 2 1638 1 0 Azospira oryzae species 146939 551759 genus 1 24 Aromatoleum 0 2 1520 species 551760 1 1496 0 Aromatoleum aromaticum 32003 order 173 1 0 Nitrosomonadales 43 21613 206379 28 1 family 0 Nitrosomonadaceae 12 7456 1 60 genus 914 5720 7 Nitrosomonas 0 species 44577 894 1 Nitrosomonas ureae 0 44574 species Nitrosomonas communis 0 1 1042 species 916 1 814 Nitrosomonas eutropha 0 2609265 no rank 0 2230 2 261292 species Nitrosomonas sp. Is79A3 0 1 1028 1 1202 Nitrosomonas sp. AL212 0 species 153948 Nitrosomonas europaea 0 1 680 915 species 35798 12 1 genus 0 Nitrosospira 4 1708 species 35799 487 1 Nitrosospira briensis 0 520 1 0 Nitrosospira multiformis species 1231 species 1288494 689 1 Nitrosospira lacus 0 2772226 family 0 1839 4 935200 genus 9 1 0 Sulfuricella 1095 2 1086 1 0 Sulfuricella denitrificans species 649841 genus 1 3 1778653 744 2 Sulfuriferula 0 2637784 no rank 0 741 1 1985873 species Sulfuriferula sp. AH1 0 741 1 0 Methylophilaceae 13 6329 32011 46 1 family 0 Methylotenera 1595 3 359407 21 1 genus species 359408 578 1 Methylotenera mobilis 0 1055487 species 0 Methylotenera versatilis 996 1 genus 1 11 1679002 2299 3 Candidatus Methylopumilus 0 627 1 Candidatus Methylopumilus turicensis 0 species 1581680 1581557 species Candidatus Methylopumilus planktonicus 0 1 1661 690 2 Methylobacillus 0 genus 1 4 404 species 405 1 686 Methylobacillus flagellatus 0 genus 16 1 568 0 2630143 no rank 0 1 568 species 1662285 568 1 0 Methylophilus sp. TWE2 genus 45 1 81682 3 1131 0 Methylovorus no rank 2634027 554 1 0 species 887061 1 554 Methylovorus sp. MP688 0 species 266009 532 1 0 Methylovorus glucosotrophus 90627 34 1 family 0 Gallionellaceae 5 1777 96 genus 2 1 0 Gallionella 734 2 732 1 Gallionella capsiferriformans 0 species 370405 314343 genus 1 7 Sideroxydans 0 1009 2 1 1002 0 Sideroxydans lithotrophicus species 63745 family 16 1 2008790 3 1428 0 Thiobacillaceae 919 genus 1 27 Thiobacillus 0 1412 2 species 36861 1385 1 0 Thiobacillus denitrificans 0 Sterolibacteriaceae 2611 5 2008793 47 1 family 378210 genus 1 24 Methyloversatilis 0 1026 2 no rank 2639971 1 1002 0 1842540 species 0 Methyloversatilis sp. RAC08 1 1002 1054211 genus 27 1 0 Sulfuritalea 2 1538 748811 species Sulfuritalea hydrogenivorans 0 1511 1 25177 37 0 Neisseriales order 253 1 206351 481 family 101 1 0 Neisseriaceae 23 13097 1912 3 0 Vitreoscilla 32 1 genus 59 0 Vitreoscilla filiformis 1 939 63 species 1 941 0 no rank 2627922 941 1 Vitreoscilla sp. C1 0 species 96942 2 678 0 Eikenella genus 5 1 538 539 species Eikenella corrodens 0 673 1 1193515 genus 6 1 0 Snodgrassella 849 2 1196083 species 0 Snodgrassella alvi 843 1 2 731 0 Simonsiella genus 1 1 71 730 1 Simonsiella muelleri 0 species 72 482 191 1 genus 0 Neisseria 7446 12 no rank 2623750 2 1086 0 species 655307 1 677 Neisseria sp. KEM232 0 species 1853276 1 409 0 Neisseria sp. 10022 species 495 457 1 Neisseria elongata 0 species 485 1 721 Neisseria gonorrhoeae 0 species 488 381 1 0 Neisseria mucosa 1853278 species Neisseria sp. 10023 0 459 1 28091 species Neisseria weaveri 0 442 1 Neisseria lactamica 0 1 659 486 species Neisseria sicca 0 418 1 490 species 0 Neisseria zoodegmatis 531 1 326523 species 1 2101 0 Neisseria meningitidis species 487 0 1380 1 421605 no rank 2052837 species 0 Neisseriaceae bacterium DSM 100970 1 1380 1 197 family 1499392 11827 13 Chromobacteriaceae 0 6352 4 0 no rank 90153 0 Chromobacterium 4 6352 535 117 1 genus no rank 2641838 1884 1 0 2059672 species 0 Chromobacterium sp. ATCC 53434 1884 1 1 1705 Chromobacterium violaceum 0 species 536 0 Chromobacterium vaccinii 1 2646 1108595 species genus 14 1 187 1024 2 0 Aquaspirillum 2620219 no rank 0 1 1010 1 1010 0 Aquaspirillum sp. LM1 species 1938604 Pseudogulbenkiania 0 2 1447 568394 1 19 genus 0 1 1428 2642558 no rank species 748280 1428 1 0 Pseudogulbenkiania sp. NH8B Laribacter 0 2 1248 168470 1 19 genus species 168471 1229 1 Laribacter hongkongensis 0 2 1559 Jeongeupia 0 1 26 genus 885864 no rank 2619593 1533 1 0 1906741 species 0 Jeongeupia sp. USM3 1 1533 0 2543 2 33809 no rank species 543913 791 1 beta proteobacterium CB 0 1 1752 Betaproteobacteria bacterium GR16-43 0 species 1904640 0 13 10380 119066 no rank 2 1428 0 Candidatus Profftella genus 3 1 1381133 species 669502 1425 1 Candidatus Profftella armatura 0 4 1 genus 189384 2 137 0 Candidatus Tremblaya species 189385 133 1 Candidatus Tremblaya princeps 0 genus 1301080 364 1 0 species 1160784 364 1 0 Candidatus Nasuia deltocephalinicola 6 6970 Kinetoplastibacterium 0 1 24 genus 33055 1632 1 Candidatus Kinetoplastibacterium crithidii 0 species 33056 0 Kinetoplastibacterium blastocrithidii 1 1108 233181 species 994695 species Candidatus Kinetoplastibacterium galatii 0 1 1203 species 994692 1 1740 0 Candidatus Kinetoplastibacterium desouzaii 994696 species 0 Candidatus Kinetoplastibacterium oncopeltii 1 1263 2 1481 0 Candidatus Accumulibacter genus 21 1 327159 1 1460 Candidatus Accumulibacter phosphatis 0 species 327160 375735 235 0 Burkholderiales order 2933 1 80840 17 21261 0 no rank 224471 26 1 genus 65047 2595 2 0 Mitsuaria 2648776 no rank 0 1 2569 1658665 species Mitsuaria sp. 7 0 2569 1 318147 genus 26 1 0 Paucibacter 2 2374 0 1 2348 2642959 no rank 1768242 species Paucibacter sp. KCTC 42545 0 2348 1 2037 2 0 Leptothrix genus 54 1 88 34029 species Leptothrix cholodnii 0 1983 1 genus 1 50 316612 2 2095 Methylibium 0 species 105560 1 2045 Methylibium petroleiphilum 0 1920 2 Thiomonas 0 genus 1 38 32012 Thiomonas intermedia 0 1 1882 926 species genus 1 51 212743 2 2151 Rhizobacter 0 946333 species Rhizobacter gummiphilus 0 1 2100 genus 26 1 93681 2 2460 0 Roseateles species 76731 2434 1 0 Roseateles depolymerans 1 2983 0 [Polyangium] brachysporum species 413882 2646 2 Rubrivivax 0 1 49 genus 28067 species 28068 1 2597 Rubrivivax gelatinosus 0 305 1 family 506 51537 44 0 Alcaligenaceae 0 Orrella 2 1217 1921582 16 1 genus 0 Orrella dioscoreae 1 1201 1851544 species genus 1 15 359336 2 1216 Castellaniella 0 Castellaniella defragrans 0 1 1201 75697 species 517 genus 672 1 0 Bordetella 22142 17 463025 species Bordetella bronchialis 0 1417 1 species 1331258 1199 1 0 Bordetella pseudohinzii no rank 2630031 1 1150 0 1 1150 0 Bordetella sp. H567 species 1697043 species 1416803 1096 1 0 Bordetella genomosp. 9 520 species 0 Bordetella pertussis 1 1393 1 632 0 Bordetella avium species 521 463040 species 0 Bordetella genomosp. 13 1417 1 2992 1 Bordetella bronchiseptica 0 species 518 1353 1 Bordetella hinzii 0 species 103855 94624 species 0 Bordetella petrii 1156 1 463024 species Bordetella genomosp. 6 0 1632 1 Bordetella holmesii 0 1 768 35814 species 0 Bordetella genomosp. 8 1 1412 1416806 species 0 Bordetella parapertussis 1 1700 519 species 463014 species 0 Bordetella flabilis 1 1224 species 123899 1 929 Bordetella trematum 0 genus 1 1 1472344 818 2 Basilea 0 1 817 0 Basilea psittacipulmonis species 1472345 3 1 genus 90243 2 700 0 Oligella 1 697 Oligella urethralis 0 species 90245 1 3 genus 29574 2444 3 Taylorella 0 84590 species Taylorella asinigenitalis 0 1193 1 29575 species 0 Taylorella equigenitalis 1248 1 737 2 Paenalcaligenes 0 genus 1 8 1100891 643674 species 0 Paenalcaligenes hominis 1 729 Achromobacter 0 15684 6 222 1 320 genus 0 Achromobacter insolitus 1405 1 217204 species 0 1660 1 2626865 no rank 1758194 species Achromobacter sp. AONIH1 0 1660 1 0 Achromobacter spanius 2599 1 217203 species 32002 species Achromobacter denitrificans 0 1 3391 Achromobacter xylosoxidans 0 1 6309 85698 species 1 27 genus 507 2 3779 Alcaligenes 0 511 species 0 Alcaligenes faecalis 3752 1 290425 1 25 genus Advenella 0 3 1612 808 1 0 Advenella kashmirensis species 310575 species 302406 779 1 0 Advenella mimigardefordensis 305976 5 1 genus 0 Pusillimonas 2 883 878 1 0 no rank 2640016 878 1 Pusillimonas sp. T7-7 0 species 1007105 84 194901 0 Burkholderiaceae 795 1 family 119060 0 Ralstonia 5 13239 48736 genus 158 1 species 105219 1 1861 Ralstonia mannitolilytica 0 Ralstonia insidiosa 0 1 1527 190721 species 329 species Ralstonia pickettii 0 2716 1 0 Ralstonia solanacearum 1 6977 305 species 1822464 257 1 genus 0 Paraburkholderia 12 19829 species 2026199 1 1642 Paraburkholderia aromaticivorans 0 species 252970 1431 1 Paraburkholderia phenoliruptrix 0 Paraburkholderia hospita 0 1 1883 169430 species 311230 species Paraburkholderia terrae 0 1602 1 948107 species 0 Paraburkholderia sprentiae 1 1532 0 Paraburkholderia phymatum 1 1480 148447 species 1 1893 Paraburkholderia xenovorans 0 species 36873 1 1635 0 no rank 2615204 1 1635 Paraburkholderia sp. SOS3 0 species 1926494 134537 species 0 Paraburkholderia fungorum 1396 1 261302 species Paraburkholderia phytofirmans 0 1 1669 species 75105 1 3409 0 Paraburkholderia caribensis genus 2571159 839 1 0 Paraburkholderia rhizoxinica 0 1 839 412963 species genus 1827195 1 1724 0 species 758793 1 1724 Burkholderia sp. RPE64 0 1 39 genus 44013 2449 4 Polynucleobacter 0 576610 species Polynucleobacter necessarius 0 1 500 1835254 species Polynucleobacter duraquae 0 1 760 0 Polynucleobacter asymbioticus 1 1150 576611 species 0 Cupriavidus 22810 9 106589 521 1 genus species 82541 1913 1 Cupriavidus gilardii 0 119219 species 0 Cupriavidus metallidurans 3223 1 106590 species 0 Cupriavidus necator 1 3009 2 6222 0 no rank 2640874 Cupriavidus sp. USMAA2-4 0 1 3311 876364 species 0 Cupriavidus sp. USMAHM13 2911 1 1389192 species 248026 species Cupriavidus pinatubonensis 0 1632 1 species 367825 2938 1 Cupriavidus sp. USMAA1020 0 3352 1 0 Cupriavidus basilensis species 68895 93217 genus 1 186 Pandoraea 0 10 13926 0 Pandoraea faecigallinarum 1 1053 656179 species 93220 species 0 Pandoraea pnomenusa 2142 1 species 573737 1413 1 0 Pandoraea oxalativorans species 93221 3242 1 0 Pandoraea pulmonicola 93222 species Pandoraea sputorum 0 1 935 1525 1 Pandoraea norimbergensis 0 species 93219 656178 species Pandoraea vervacti 0 1184 1 species 445709 1074 1 0 Pandoraea thiooxydans 1172 1 0 Pandoraea apista species 93218 3486 1 genus 32008 41 119290 0 Burkholderia no rank 2613784 15167 11 0 1 1386 0 Burkholderia sp. CCGE1001 species 640510 919 1 Burkholderia sp. PAMC 26561 0 species 1795043 Burkholderia sp. RPE67 0 1707 1 758796 species Burkholderia sp. 2002721687 0 1 1336 1468409 species 1795874 species 0 Burkholderia sp. PAMC 28687 967 1 1455 1 0 Burkholderia sp. CCGE1003 species 640512 Burkholderia sp. KJ006 0 1313 1 416344 species 1 1502 Burkholderia sp. HB1 0 species 1678678 0 Burkholderia sp. Bp7605 1 1235 1740163 species species 1740162 1 1226 0 Burkholderia sp. Bp5365 Burkholderia sp. YI23 0 2121 1 1097668 species 87882 species group 0 19 52882 Burkholderia diffusa 0 1216 1 488732 species 1244 1 Burkholderia dolosa 0 species 152500 1 5176 Burkholderia ubonensis 0 species 101571 2316 1 0 Burkholderia ambifaria species 152480 1529 1 0 [Pseudomonas] mesoacidophila species 265293 Burkholderia contaminans 0 1673 1 488447 species Burkholderia seminalis 0 1 1529 488731 species species 95485 1 2569 0 Burkholderia stabilis 2679 1 0 Burkholderia latens species 488446 species 60552 2948 1 0 Burkholderia vietnamiensis species 482957 1 3646 Burkholderia lata 0 1107 1 Burkholderia territorii 0 species 1503055 0 Burkholderia pyrrocinia 1 1242 60550 species Burkholderia metallica 0 1 1305 488729 species Burkholderia cenocepacia 0 7613 1 95486 species Burkholderia stagnalis 0 1 1593 1503054 species species 87883 1 3693 0 Burkholderia multivorans Burkholderia cepacia 0 1 8384 292 species species 1207504 1420 1 Burkholderia pseudomultivorans 0 Burkholderia glumae 0 1 4085 337 species species 41899 1 2129 0 Burkholderia plantarii 28095 species Burkholderia gladioli 0 3697 1 7 37844 0 species group 111527 1637841 species Burkholderia sp. MSMB0852 0 1 2404 342113 species Burkholderia oklahomensis 0 4342 1 0 Burkholderia mallei 1 3638 13373 species 1 18344 Burkholderia pseudomallei 0 species 28450 species 1637831 1 2301 Burkholderia sp. MSMB617WGS 0 57975 species 0 Burkholderia thailandensis 1 4807 1637837 species 0 Burkholderia sp. MSMB0266 1 2008 1449 2 0 no rank 80841 0 Burkholderiales bacterium YL45 1 566 1834205 species 883 1 Burkholderiales bacterium GJ-E10 0 species 1469502 0 Oxalobacteraceae 32516 28 75682 family 206 1 963 1 121 genus Herbaspirillum 0 6 8212 1 1955 Herbaspirillum seropedicae 0 species 964 0 1097 1 2624150 no rank species 2025949 1 1097 Herbaspirillum sp. meg3 0 80842 species 0 Herbaspirillum rubrisubalbicans 1 1235 92645 species 0 Herbaspirillum frisingense 1770 1 species 341045 1 2034 Herbaspirillum hiltneri 0 149698 genus 165 1 0 Massilia 9145 6 3576 2 0 no rank 2609279 1 2052 0 Massilia sp. WG5 species 1707785 1678028 species Massilia sp. NR 4-1 0 1524 1 0 Massilia putida 1903 1 1141883 species Massilia sp. B2 0 1 1766 2045208 species species 2072590 1 1735 0 Massilia sp. ZMN-3 genus 1 11 303379 3 1354 Herminiimonas 0 species 204773 1 695 0 Herminiimonas arsenicoxydans Herminiimonas arsenitoxidans 0 1 648 1809410 species 0 448 1 846 genus 448 1 Oxalobacter formigenes 0 species 847 4 5665 0 Collimonas genus 90 1 202907 species 158899 1 1599 0 Collimonas fungivorans 1303 1 Collimonas pratensis 0 species 279113 1 2673 0 Collimonas arenae species 279058 7 7486 0 Janthinobacterium genus 101 1 29580 4510 4 0 no rank 2610881 1 697 Janthinobacterium sp. Marseille 0 species 375286 1309 1 0 Janthinobacterium sp. LM6 species 1938606 species 1236179 912 1 0 Janthinobacterium sp. B9-8 species 1644131 1 1592 0 Janthinobacterium sp. 1_2014MBL_MicDiv 1483 1 Janthinobacterium agaricidamnosum 0 species 55508 Janthinobacterium svalbardensis 0 1392 1 368607 species 71138 59 0 Comamonadaceae family 719 1 80864 genus 1 38 28065 4493 5 Rhodoferax 0 192843 species 0 Rhodoferax ferrireducens 967 1 81479 species Rhodoferax antarcticus 0 1 964 Rhodoferax koreense 0 1 1708 1842727 species 1484693 species Rhodoferax saidenbachensis 0 816 1 genus 7 1 665874 3 1362 0 Limnohabitans no rank 2626134 2 1355 0 563 1 Limnohabitans sp. 103DPR2 0 species 1678129 species 1678128 792 1 0 Limnohabitans sp. 63ED37-2 219181 genus 1 8 Ottowia 0 3 2017 0 1 683 2645081 no rank 1658672 species 0 Ottowia sp. oral taxon 894 683 1 1326 1 0 Ottowia sp. KADR8-3 species 2109914 34072 201 1 genus 0 Variovorax 14108 5 436515 species 0 Variovorax boronicumulans 1 2225 species 34073 7618 1 0 Variovorax paradoxus 4064 2 0 no rank 663243 1 2209 0 Variovorax sp. PMC12 species 2126319 1795631 species 0 Variovorax sp. PAMC 28711 1 1855 Verminephrobacter 0 2559 2 364316 1 9 genus 364317 species 0 Verminephrobacter eiseniae 1 2550 4 6247 Comamonas 0 1 35 genus 283 0 Comamonas kerstersii 1883 1 225992 species 1082851 species 0 Comamonas serinivorans 1 2115 285 species Comamonas testosteroni 0 1 2214 1436289 1 6 genus Candidatus Symbiobacter 0 737 2 0 Candidatus Symbiobacter mobilis 731 1 1436290 species 343 1 genus 12916 9 10065 0 Acidovorax species 553814 834 1 Acidovorax sp. NA3 0 species 721785 1 1003 Acidovorax ebreus 0 Acidovorax citrulli 0 1 1555 80869 species no rank 2684926 4 4531 0 358220 species Acidovorax sp. KKS102 0 1 1073 species 1842533 1 1075 Acidovorax sp. RAC01 0 Acidovorax sp. JS42 0 1075 1 232721 species 0 Acidovorax sp. T1 1 1308 1858609 species 80867 species Acidovorax avenae 0 1 1799 1 25 genus 201096 1737 2 Alicycliphilus 0 179636 species 0 Alicycliphilus denitrificans 1 1712 0 1 1219 2678886 genus 2116657 species 0 Melaminivora sp. SC2-7 1219 1 genus 1 14 352450 928 2 Simplicispira 0 1 914 Simplicispira sp. SC1-8 0 species 2109915 genus 1 42 52972 4754 3 Polaromonas 0 0 1 3101 2638319 no rank 296591 species 0 Polaromonas sp. JS666 1 3101 1611 1 Polaromonas naphthalenivorans 0 species 216465 4270 4 0 Hydrogenophaga 41 1 genus 47420 0 2 3055 2610897 no rank species 795665 1660 1 0 Hydrogenophaga sp. PBC 0 Hydrogenophaga sp. RAC07 1395 1 1842537 species 0 Hydrogenophaga crassostreae 1 1174 1763535 species genus 2490452 2 2263 0 species 1458425 1 1158 0 Comamonadaceae bacterium A1 1458426 species 0 Comamonadaceae bacterium B1 1 1105 3153 2 0 Ramlibacter 38 1 genus 174951 1 3115 Ramlibacter tataouinensis 0 species 94132 1649468 genus 1 39 Melaminivora 0 1268 2 no rank 2641902 1 1229 0 Melaminivora sp. SC2-9 0 1229 1 2109913 species Diaphorobacter 0 1255 2 238749 1 2 genus 1253 1 0 Diaphorobacter polyhydroxybutyrativorans species 1546149 Delftia 0 7984 5 80865 genus 1 197 2613839 no rank 0 4055 2 1 1829 Delftia sp. HK171 0 species 1920191 Delftia sp. Cs1-4 0 1 2226 742013 species 1796 1 0 Delftia acidovorans species 80866 species 180282 1 1936 0 Delftia tsuruhatensis 1390 5 0 class 580370 1 20 order 580371 5 1390 Mariprofundales 0 580372 7 1 family 0 Mariprofundaceae 4 1370 1363 3 0 Mariprofundus 36 1 genus 377315 1 603 Mariprofundus aestuarium 0 species 1921086 1921087 species 0 Mariprofundus ferrinatatus 724 1 subphylum 68525 201 225841 0 28221 179 1 class 0 Deltaproteobacteria 139132 130 Desulfovibrionales 0 17187 26 213115 1 120 order 213116 family 8 1 0 Desulfomicrobiaceae 4 1581 898 genus 22 1 0 Desulfomicrobium 1573 3 0 Desulfomicrobium baculatum 1 974 899 species species 132132 577 1 0 Desulfomicrobium orale family 5 1 213117 564 3 0 Desulfohalobiaceae genus 8 1 45662 2 559 0 Desulfohalobium species 45663 1 551 Desulfohalobium retbaense 0 0 Desulfovibrionaceae 18 14922 194924 101 1 family 8663 9 Desulfovibrio 0 genus 1 100 872 Desulfovibrio vulgaris 0 2537 1 881 species species 1725232 214 1 Candidatus Desulfovibrio trichonymphae 0 species 184917 1 1494 0 Desulfovibrio magneticus species 44742 1 662 0 Desulfovibrio fairfieldensis species 876 1 1770 0 Desulfovibrio desulfuricans species 58180 1 700 0 Desulfovibrio alaskensis Desulfovibrio piger 0 1 729 901 species 457 1 0 no rank 2593640 1 457 Desulfovibrio sp. G11 0 species 631220 genus 2582840 1 963 0 Desulfovibrio africanus 0 963 1 873 species Pseudodesulfovibrio 0 2795 4 2035811 1 29 genus 1716143 species Pseudodesulfovibrio indicus 0 1 1159 1 1035 Pseudodesulfovibrio aespoeensis 0 species 182210 0 Pseudodesulfovibrio profundus 1 572 57320 species 5 1 genus 41707 1442 2 0 Lawsonia 1437 1 Lawsonia intracellularis 0 species 29546 1 958 0 genus 2794998 0 Desulfovibrio salexigens 958 1 880 species order 1 204 69541 24 20906 Desulfuromonadales 0 213421 family 1 65 Desulfuromonadaceae 0 6910 9 3545 5 0 Pelobacter 44 1 genus 18 no rank 2620299 765 1 0 1 765 0 Pelobacter sp. SFB93 species 1842532 29542 species 0 Pelobacter acetylenicus 754 1 1 1170 Pelobacter propionicus 0 species 29543 1 812 0 Pelobacter carbinolicus species 19 3 3300 Desulfuromonas 0 1 47 genus 890 0 1 1555 2614637 no rank species 1823759 1555 1 0 Desulfuromonas sp. DDH964 1603606 species Desulfuromonas soudanensis 0 1698 1 13792 14 Geobacteraceae 0 family 1 95 213422 0 Geobacter 11 12690 28231 genus 206 1 Geobacter pickeringii 0 1063 1 345632 species Geobacter metallireducens 0 1 1703 28232 species 351604 species Geobacter uraniireducens 0 1 2271 0 Geobacter sulfurreducens 1 829 35554 species 225194 species Geobacter bemidjiensis 0 1177 1 1203471 species 0 Geobacter daltonii 1 865 2 2877 0 no rank 2627627 1 1234 0 Geobacter sp. M21 species 443144 443143 species 0 Geobacter sp. M18 1 1643 313985 species 0 Geobacter lovleyi 1 762 species 1340425 937 1 Geobacter anodireducens 0 392332 1 17 genus Geoalkalibacter 0 2 1007 species 483547 990 1 Geoalkalibacter subterraneus 0 80946 38 0 Myxococcales order 709 1 29 0 3 6716 224462 suborder 6716 3 Kofleriaceae 0 family 1 34 224464 162027 1 30 genus Haliangium 0 6682 2 Haliangium ochraceum 0 6652 1 80816 species 0 26 44019 80811 suborder Myxococcaceae 0 9 19074 31 1 93 family Corallococcus 0 5857 3 83461 genus 1 78 species 35 1 2599 Myxococcus macrosporus 0 species 184914 1 3180 0 Corallococcus coralloides 0 Myxococcus 13124 5 32 311 1 genus 33 species Myxococcus fulvus 0 5637 1 2603 1 Myxococcus stipitatus 0 species 83455 1297742 species Myxococcus hansupus 0 2471 1 0 Myxococcus xanthus 2102 1 34 species 5 9756 Anaeromyxobacteraceae 0 1 54 family 1524215 9702 4 0 Anaeromyxobacter 155 1 genus 161492 0 2 5446 2620896 no rank 447217 species 0 Anaeromyxobacter sp. K 2517 1 species 404589 1 2929 Anaeromyxobacter sp. Fw109-5 0 161493 species 0 Anaeromyxobacter dehalogenans 4101 1 0 Archangiaceae 9 13316 39 190 1 family 0 Melittangium 2 2469 44 genus 19 1 Melittangium boletus 0 2450 1 83453 species 40 28 1 genus 0 Stigmatella 2197 2 0 Stigmatella aurantiaca 2169 1 41 species 5186 2 Archangium 0 1 9 genus 47 48 species 0 Archangium gephyra 1 5177 42 genus 32 1 0 Cystobacter 2 3274 3242 1 0 Cystobacter fuscus species 43 1 19 family 1524213 1873 3 Vulgatibacteraceae 0 0 Vulgatibacter 2 1854 1524214 35 1 genus 1 1819 Vulgatibacter incomptus 0 species 1391653 0 8 29502 80812 suborder family 1 70 49 5 23590 Polyangiaceae 0 0 Sorangium 19355 2 39643 71 1 genus 1 19284 Sorangium cellulosum 0 species 56 1 12 genus 50 2 4165 Chondromyces 0 52 species Chondromyces crocatus 0 4153 1 Sandaracinaceae 0 3 5912 1055686 family 1 21 5891 2 0 Sandaracinus genus 40 1 1055688 5851 1 0 Sandaracinus amylolyticus species 927083 Desulfobacterales 0 20 12853 213118 1 64 order 1 52 family 213119 10 9057 Desulfobacteraceae 0 Desulfatibacillum 0 2 3583 218207 genus 1 9 species 259354 3574 1 0 Desulfatibacillum alkenivorans 0 Desulfobacula 2166 2 28222 6 1 genus 28223 species Desulfobacula toluolica 0 1 2160 953 2 Desulfobacterium 0 genus 1 13 2295 2296 species Desulfobacterium autotrophicum 0 940 1 896 genus 16 1 0 Desulfococcus 2303 3 181663 species 0 Desulfococcus oleovorans 1 1267 897 species Desulfococcus multivorans 0 1 1020 Desulfobulbaceae 0 9 3732 213121 1 51 family 2 672 0 Desulfobulbus 10 1 genus 893 1986146 species 0 Desulfobulbus sp. ORNL 662 1 genus 7 1 427922 864 2 0 Desulfurivibrio 1 857 Desulfurivibrio alkaliphilus 0 species 427923 109168 1 27 genus Desulfotalea 0 1059 2 0 Desulfotalea psychrophila 1032 1 84980 species 1 6 genus 53318 1086 2 Desulfocapsa 0 1 1080 0 Desulfocapsa sulfexigens species 65555 213462 1 25 order Syntrophobacterales 0 11 2741 13 1 family 213468 1869 7 0 Syntrophaceae 0 Desulfobacca 608 2 60892 genus 4 1 Desulfobacca acetoxidans 0 604 1 60893 species 0 Desulfomonile 691 2 2357 7 1 genus 2358 species 0 Desulfomonile tiedjei 1 684 43773 genus 1 7 Syntrophus 0 557 2 0 Syntrophus aciditrophicus 1 550 316277 species 0 Syntrophobacteraceae 847 3 213465 family 14 1 genus 1 15 29526 833 2 Syntrophobacter 0 119484 species Syntrophobacter fumaroxidans 0 818 1 order 18 1 453227 1587 4 0 Desulfarculales 1569 3 Desulfarculaceae 0 family 1 23 453228 2 1546 Desulfarculus 0 genus 1 10 453229 453230 species 0 Desulfarculus baarsii 1536 1 6 1 order 213113 6 2733 0 Desulfurellales 117942 11 1 family 0 Desulfurellaceae 5 2727 0 Desulfurella 2 1807 33001 11 1 genus 33002 species Desulfurella acetivorans 0 1 1796 2 909 Hippea 0 genus 1 3 84404 84405 species Hippea maritima 0 1 906 67 1 class 29547 71 86709 0 Epsilonproteobacteria order 185 1 213849 64 84606 0 Campylobacterales 14 11840 0 Helicobacteraceae 12 1 family 72293 411 1 0 genus 843 0 Wolinella succinogenes 1 411 844 species 45 1 genus 209 12 11417 0 Helicobacter 1591088 species Helicobacter himalayensis 0 472 1 76936 species 0 Helicobacter typhlonius 1 502 species 217 1 460 Helicobacter mustelae 0 212 species 0 Helicobacter acinonychis 442 1 138563 species 0 Helicobacter cetorum 1 1202 788 1 0 Helicobacter hepaticus species 32025 214 species Helicobacter felis 0 262 1 species 37372 759 1 Helicobacter bilis 0 1 5346 Helicobacter pylori 0 species 210 0 Helicobacter cinaedi 601 1 213 species no rank 2593540 1 538 0 1 538 Helicobacter sp. MIT 01-6242 0 species 222136 family 2771471 4 3642 0 0 649 1 286130 genus 0 Sulfuricurvum kujiense 649 1 148813 species 1 14 genus 202746 3 2993 Sulfurimonas 0 Sulfurimonas denitrificans 0 1529 1 39766 species 202747 species 0 Sulfurimonas autotrophica 1 1450 0 2490 4 2771472 family 0 1 942 269260 genus Nitratifractor salsuginis 0 1 942 269261 species 1 20 genus 265570 1548 3 Sulfurovum 0 species 206403 749 1 Sulfurovum lithotrophicum 0 no rank 2646778 1 779 0 Sulfurovum sp. NBC37-1 0 1 779 387093 species 1 122 family 72294 41 66449 Campylobacteraceae 0 0 Campylobacter 26 42391 194 genus 335 1 species 522485 1 937 0 Campylobacter avium Campylobacter concisus 0 1 1228 199 species 1236 1 Campylobacter hyointestinalis 0 species 198 0 Campylobacter ureolyticus 1 2080 827 species no rank 2593542 5055 4 0 1500960 species 0 Campylobacter sp. RM16704 1 1733 species 1660076 1178 1 0 Campylobacter sp. RM12175 1 880 0 Campylobacter sp. RM6137 species 1660073 0 Campylobacter sp. RM8964 1264 1 1660074 species 195 species Campylobacter coli 0 2869 1 species 260714 2002 1 Campylobacter insulaenigrae 0 0 Campylobacter helveticus 1 962 28898 species species 488546 1652 1 0 Campylobacter peloridis 200 species Campylobacter curvus 0 1 299 1 1097 0 Campylobacter hominis species 76517 1 1783 Campylobacter subantarcticus 0 species 497724 197 species Campylobacter jejuni 0 3778 1 species 1965231 2414 1 Campylobacter pinnipediorum 0 species 1031542 1882 1 Campylobacter volucris 0 species 201 1 4577 0 Campylobacter lari species 75658 1 836 0 Campylobacter lanienae 1 1661 0 Campylobacter fetus species 196 344 1 0 Campylobacter gracilis species 824 species 1244531 1079 1 Campylobacter iguaniorum 0 species 206 1 2973 Campylobacter sputorum 0 1312 1 0 Campylobacter cuniculorum species 374106 0 5 17856 2321108 no rank 1 68 genus 28196 9361 3 Arcobacter 0 5617 1 Arcobacter butzleri 0 species 28197 0 Arcobacter nitrofigilis 1 3676 28199 species 2321187 genus 0 4140 1 1 4140 Arcobacter sp. LPB0137 0 species 1850254 no rank 2321207 1 4355 0 4355 1 Arcobacter sp. L 0 species 944547 0 Sulfurospirillum 6080 9 57665 85 1 genus 1 665 Sulfurospirillum multivorans 0 species 66821 1 522 Sulfurospirillum cavolei 0 species 366522 species 44674 728 1 Sulfurospirillum barnesii 0 Sulfurospirillum deleyianum 0 787 1 65553 species no rank 2618290 2637 3 0 species 1581011 937 1 0 Sulfurospirillum sp. UCH001 1 815 0 Sulfurospirillum sp. JPD-1 species 220622 885 1 Sulfurospirillum sp. SL2-1 0 species 1986224 656 1 0 Sulfurospirillum halorespirans species 194424 Nautiliales 0 6 2036 235899 1 6 order 224467 11 1 family 0 Nautiliaceae 1368 3 Nautilia 0 1357 2 191291 genus 1 11 1346 1 0 Nautilia profundicola species 244787 662 2 0 family 2795691 269258 genus 1 8 Nitratiruptor 0 662 2 2624044 no rank 0 654 1 0 Nitratiruptor sp. SB155-2 1 654 387092 species 1807140 class 0 3371 6 225057 order 1 73 Acidithiobacillales 0 3371 6 Acidithiobacillaceae 0 3298 5 225058 family 1 38 0 Acidithiobacillus 3260 4 119977 54 1 genus 1 1176 0 Acidithiobacillus caldus species 33059 0 Acidithiobacillus ferrooxidans 878 1 920 species 160808 species Acidithiobacillus ferrivorans 0 1152 1 0 Oligoflexia 12 6369 1553900 class 5 1 order 1 17 213481 3092 5 Bdellovibrionales 0 213483 family 16 1 0 Bdellovibrionaceae 3075 4 958 genus 1 18 Bdellovibrio 0 3 3059 2266 1 0 Bdellovibrio bacteriovorus species 959 Bdellovibrio exovorus 0 1 775 453816 species 0 Bacteriovoracales 6 3272 2024979 5 1 order 1024 2 Bacteriovoracaceae 0 family 1 1 263369 genus 146784 1023 1 0 0 Bacteriovorax stolpii 1 1023 960 species 1652132 1 6 family Halobacteriovoraceae 0 2243 3 1652133 6 1 genus 0 Halobacteriovorax 2237 2 species 97084 2231 1 0 Halobacteriovorax marinus Gammaproteobacteria 0 1163134 908 1236 class 1 2106 3 638 0 order 135615 868 1 13 family Cardiobacteriaceae 0 638 3 Dichelobacter 0 625 2 869 genus 1 4 0 Dichelobacter nodosus 1 621 870 species 386 1 order 135613 52 63112 0 Chromatiales Halothiobacillaceae 0 4 1869 255526 family 1 15 Halothiobacillus 0 3 1854 109262 1 47 genus 1 1066 0 no rank 2636392 1860122 species 0 Halothiobacillus sp. LS2 1066 1 927 species Halothiobacillus neapolitanus 0 741 1 18 29411 Chromatiaceae 0 family 1 184 1046 1136 2 0 Candidatus Nitrosoglobus 29 1 genus 1980513 1 1107 0 Candidatus Nitrosoglobus terrae species 1630141 Nitrosococcus 0 3220 4 1227 genus 1 67 473531 species 0 Nitrosococcus watsonii 1 1359 133539 species Nitrosococcus halophilus 0 876 1 1229 species Nitrosococcus oceani 0 1 918 156885 genus 28 1 0 Thioflavicoccus 2 2722 2694 1 0 Thioflavicoccus mobilis species 80679 2 8014 0 Thiodictyon genus 57 1 53392 0 Candidatus Thiodictyon syntrophicum 7957 1 1166950 species Allochromatium 0 3085 2 85072 1 31 genus 1049 species Allochromatium vinosum 0 1 3054 1 3691 0 no rank 82569 3691 1 0 Chromatiaceae bacterium 2141T.STBD.0c.01a species 1978339 13724 17 1 genus 0 Thiocystis 2 3034 73141 species Thiocystis violascens 0 1 3017 85076 53 1 genus 0 Marichromatium 4325 2 4272 1 Marichromatium purpuratum 0 species 37487 family 190 1 72276 18 21061 0 Ectothiorhodospiraceae 1335745 genus 1 25 Spiribacter 0 1958 3 species 1335746 841 1 0 Spiribacter salinus 1335757 species 0 Spiribacter curvatus 1092 1 genus 1 21 1765964 2 1600 Acidihalobacter 0 160660 species Acidihalobacter prosperus 0 1 1579 genus 37 1 133193 2205 2 0 Alkalilimnicola 2168 1 Alkalilimnicola ehrlichii 0 species 351052 Halorhodospira 0 1524 2 85108 1 13 genus 0 Halorhodospira halophila 1 1511 1053 species genus 13 1 1051 2 2268 0 Ectothiorhodospira 2684909 no rank 0 2255 1 2255 1 0 Ectothiorhodospira sp. BSL-9 species 1442136 Thioalkalivibrio 0 6 11316 106633 1 228 genus 1 1713 0 Thioalkalivibrio paradoxus species 108010 4237 1 0 Thioalkalivibrio sulfidiphilus species 1033854 1769 1 0 Thioalkalivibrio nitratireducens species 186931 1643 1 Thioalkalivibrio versutus 0 species 106634 no rank 2621013 1726 1 0 species 396595 1 1726 0 Thioalkalivibrio sp. K90mix 3 2321 0 Granulosicoccaceae family 17 1 449719 2 2304 0 Granulosicoccus 73 1 genus 437504 437505 species Granulosicoccus antarcticus 0 2231 1 2131 3 Wenzhouxiangellaceae 0 1 4 family 1676141 Wenzhouxiangella 0 2127 2 1676142 1 36 genus 1579979 species 0 Wenzhouxiangella marina 2091 1 3 1574 Woeseiaceae 0 family 1 3 1738654 1738655 genus 22 1 0 Woeseia 1571 2 species 1548547 1 1549 0 Woeseia oceani 2 4359 0 no rank 451214 genus 70 1 1273155 2 4359 0 Thiohalobacter 585455 species Thiohalobacter thiocyanaticus 0 4289 1 order 38 1 135618 10655 13 0 Methylococcales 403 61 1 family 0 Methylococcaceae 10617 12 0 Methylovulum 2 990 762296 8 1 genus 0 Methylovulum psychrotolerans 1 982 1704499 species 416 genus 185 1 0 Methylomonas 5 6468 1 2494 0 Methylomonas denitrificans species 1538553 0 1 1379 2608980 no rank Methylomonas sp. DH-1 0 1 1379 1727196 species 0 Methylomonas methanica 1 1160 421 species species 702114 1 1250 Methylomonas koyamae 0 genus 1 16 413 1314 2 Methylococcus 0 1298 1 Methylococcus capsulatus 0 species 414 0 Methylomicrobium 1784 2 39773 genus 10 1 0 Methylomicrobium alcaliphilum 1774 1 271065 species Acidiferrobacterales 0 6 3816 1692040 1 38 order 5 3778 0 Acidiferrobacteraceae family 49 1 1692041 Sulfurifustis 0 2 2320 1692042 1 19 genus 0 Sulfurifustis variabilis 1 2301 1675686 species 1409 2 Sulfuricaulis 0 genus 1 26 1744881 species 1620215 1383 1 Sulfuricaulis limicola 0 Pasteurellales 0 24436 33 135625 1 19 order 712 family 1 127 Pasteurellaceae 0 24417 32 Gallibacterium 0 944 2 155493 genus 1 12 750 species 0 Gallibacterium anatis 1 932 1880 3 Aggregatibacter 0 genus 1 21 416916 Aggregatibacter actinomycetemcomitans 0 1 967 714 species 892 1 0 Aggregatibacter aphrophilus species 732 476528 6 1 genus 0 Bibersteinia 2 1055 47735 species 0 Bibersteinia trehalosi 1049 1 0 Haemophilus 7631 6 724 genus 55 1 1 871 0 Haemophilus parainfluenzae species 729 species 249188 589 1 Haemophilus pittmaniae 0 species 727 3943 1 0 Haemophilus influenzae 0 650 1 2609962 no rank species 712310 650 1 0 Haemophilus sp. oral taxon 036 730 species [Haemophilus] ducreyi 0 1523 1 1408 2 0 Glaesserella genus 4 1 2094023 738 species 0 Glaesserella parasuis 1 1404 Pasteurella 0 3 4160 745 1 27 genus 0 Pasteurella multocida 1 3023 747 species 1110 1 Pasteurella dagmatis 0 species 754 genus 24 1 713 2568 5 0 Actinobacillus 0 Actinobacillus suis 1 608 716 species Actinobacillus pleuropneumoniae 0 845 1 715 species 67854 species 0 Actinobacillus succinogenes 1 452 718 species 0 Actinobacillus equuli 639 1 697331 genus 8 1 0 Basfia 2 521 157673 species 0 [Mannheimia] succiniciproducens 513 1 45 1 genus 75984 2732 4 0 Mannheimia 1 647 0 no rank 2645054 1 647 Mannheimia sp. USDA-ARS-USMARC-1261 0 species 1432056 species 75985 1005 1 Mannheimia haemolytica 0 species 85404 1035 1 Mannheimia varigena 0 1391 2 0 Histophilus 2 1 genus 214906 species 731 1 1389 Histophilus somni 0 order 1 14 1934945 2054 4 Immundisolibacterales 0 family 18 1 1934946 2040 3 0 Immundisolibacteraceae 2 2022 0 Immundisolibacter genus 45 1 1934947 1810504 species Immundisolibacter cernigliae 0 1 1977 no rank 118884 14 20279 0 2 2334 Thiolapillus 0 genus 1 26 1608298 0 Thiolapillus brandeum 1 2308 1076588 species 198346 clade 0 1 2396 186490 species 0 Candidatus Baumannia cicadellinicola 2396 1 genus 1 11 1524249 1438 2 Pseudohongiella 0 1249552 species 0 Pseudohongiella spirulinae 1427 1 0 Sedimenticola 4412 2 349742 17 1 genus 1543721 species 0 Sedimenticola thiotaurini 4395 1 0 Candidatus Thioglobus 3 4621 655184 46 1 genus 0 Candidatus Thioglobus autotrophicus 1 1421 1705394 species species 1427364 3154 1 Candidatus Thioglobus singularis 0 5078 4 0 clade 32036 Calyptogena okutanii thioautotrophic gill symbiont 0 1 2062 410330 species 1541743 8 1 genus 0 Candidatus Ruthia 1594 2 species 386487 1586 1 0 Candidatus Ruthia magnifica Bathymodiolus septemdierum thioautotrophic gill symbiont 0 1 1422 113267 species 1706369 order 1 88 Cellvibrionales 0 23810 29 1706373 1 23 family Microbulbiferaceae 0 5 4784 Microbulbifer 0 4 4761 48073 1 91 genus 260552 species Microbulbifer agarilyticus 0 1546 1 1549 1 Microbulbifer aggregans 0 species 1769779 1 1575 Microbulbifer thermotolerans 0 species 252514 9726 12 Cellvibrionaceae 0 1 95 family 1706371 10 15 1 genus 0 Cellvibrio 3753 4 2624793 no rank 0 2500 2 species 1945512 1126 1 Cellvibrio sp. PSBB023 0 Cellvibrio sp. PSBB006 0 1374 1 1987723 species 155077 species Cellvibrio japonicus 0 1 1238 1201 2 0 Simiduia 9 1 genus 447467 species 447471 1 1192 Simiduia agarivorans 0 1385 2 Saccharophagus 0 1 22 genus 316625 0 Saccharophagus degradans 1363 1 86304 species 15 1 genus 2425 2 1427 0 Teredinibacter 2426 species Teredinibacter turnerae 0 1412 1 1865 1 0 genus 2036021 Agarilytica rhodophyticola 0 1 1865 1737490 species Spongiibacteraceae 0 4757 7 1706375 family 1 76 genus 9 1 1084558 2 1980 0 Oceanicoccus Oceanicoccus sagamiensis 0 1971 1 716816 species 2 1390 0 Spongiibacter 8 1 genus 630749 no rank 2631504 1382 1 0 1620392 species 0 Spongiibacter sp. IMCC21906 1382 1 1311 2 0 Zhongshania 18 1 genus 1434050 1 1293 Zhongshania aliphaticivorans 0 species 1470434 Halieaceae 0 4455 4 1706372 1 16 family Halioglobus 0 3 4439 1217416 genus 1 100 0 Halioglobus japonicus 2267 1 930805 species 930806 species Halioglobus pacificus 0 2072 1 135619 292 1 order 0 Oceanospirillales 59980 72 Oleiphilaceae 0 3 1723 191033 family 1 42 11 1 genus 141450 1681 2 0 Oleiphilus 1670 1 0 Oleiphilus messinensis species 141451 family 250 1 28256 30013 32 0 Halomonadaceae 204286 1 17 genus Cobetia 0 2 1749 species 28258 1732 1 0 Cobetia marina 2745 1 303 genus Halomonas 0 15 18148 2609666 no rank 0 8753 8 2136172 species 0 Halomonas sp. SF2003 1481 1 1949203 species Halomonas sp. 'Soap Lake #6' 0 1 884 1610576 species Halomonas sp. R57-5 0 1 939 1 890 0 Halomonas sp. 'Soap Lake #7' species 1962264 species 1971364 1 950 Halomonas sp. GT 0 0 Halomonas sp. GFAJ-1 1 684 1118153 species species 1504981 1 954 0 Halomonas sp. KO116 species 1883416 1 1971 Halomonas sp. 1513 0 0 Halomonas campaniensis 1 706 213554 species 1 2531 0 Halomonas beimenensis species 475662 1 2046 Halomonas aestuarii 0 species 1897729 115561 species Halomonas hydrothermalis 0 1 1073 507626 species 0 Halomonas chromatireducens 1305 1 1 1431 0 Halomonas huangheensis species 1178482 2 1815 Salinicola 0 1 9 genus 404432 1806 1 0 Salinicola tamaricis species 1771309 Kushneria 0 3 1971 504090 genus 1 26 0 Kushneria marisflavi 900 1 157779 species 0 Kushneria konosiri 1045 1 698828 species 42054 9 1 genus 0 Chromohalobacter 1272 2 0 Chromohalobacter salexigens 1263 1 158080 species 376488 1 14 genus Halotalea 0 1516 2 0 Halotalea alkalilenta 1502 1 376489 species no rank 114403 3292 5 0 114185 2 1 genus 0 Candidatus Carsonella 2 573 species 114186 1 571 0 Candidatus Carsonella ruddii 1495768 genus 0 1087 1 species 1495769 1087 1 0 Candidatus Evansia muelleri 0 Candidatus Portiera 1632 2 235572 genus 21 1 0 Candidatus Portiera aleyrodidarum 1 1611 91844 species family 7 1 224379 3 1433 0 Hahellaceae 2 1426 0 Hahella genus 17 1 158481 species 158327 1409 1 Hahella chejuensis 0 family 13 1 255527 5 2928 0 Saccharospirillaceae genus 14 1 1445504 2 1591 0 Gynuella Gynuella sunshinyii 0 1577 1 1445505 species 230494 1 11 genus Reinekea 0 2 1324 1 1313 Reinekea forsetii 0 species 1336806 0 Alcanivoracaceae 8601 9 224372 44 1 family 2 1266 0 Ketobacter genus 37 1 2025617 1917421 species Ketobacter alkanivorans 0 1 1229 genus 1 196 59753 7291 6 Alcanivorax 0 Alcanivorax borkumensis 0 1 1048 59754 species 1094342 species Alcanivorax xenomutans 0 1 1638 1750 1 Alcanivorax dieselolei 0 species 285091 Alcanivorax pacificus 0 1651 1 1306787 species no rank 2638842 1 1008 0 1 1008 0 Alcanivorax sp. NBRC 101098 species 1113728 0 Kangiellaceae 4342 6 1920240 28 1 family Kangiella 0 4314 5 261963 genus 1 66 0 Kangiella profundi 1181 1 1561924 species species 914150 943 1 Kangiella geojedonensis 0 species 261964 1139 1 Kangiella koreensis 0 985 1 0 Kangiella sediminilitoris species 1144748 135620 family 78 1 0 Oceanospirillaceae 10648 13 48075 genus 24 1 0 Marinobacterium 2248 2 0 Marinobacterium aestuarii 1 2224 1821621 species 0 Marinomonas 4201 4 28253 29 1 genus 1725 1 0 no rank 196814 1 1725 0 Marinomonas sp. MWYL1 species 400668 1149 1 Marinomonas posidonica 0 species 936476 species 119864 1 1298 0 Marinomonas mediterranea 10 1 genus 1537406 2 1385 0 Bacterioplanes 0 Bacterioplanes sanyensis 1375 1 1249553 species Thalassolituus 0 1478 2 187492 genus 1 6 species 187493 1 1472 Thalassolituus oleivorans 0 2 1258 0 Oleispira genus 12 1 188907 species 188908 1 1246 Oleispira antarctica 0 54 102005 Xanthomonadales 0 1 555 order 135614 39 89874 0 Xanthomonadaceae 757 1 family 32033 2370 3 1 genus 0 Xylella 3873 2 Xylella fastidiosa 0 1 3870 2371 species 68 genus 112 1 0 Lysobacter 14830 5 69 species Lysobacter enzymogenes 0 2264 1 species 262324 2278 1 Lysobacter gummosus 0 1 5690 0 Lysobacter antibioticus species 84531 0 Lysobacter capsici 4486 1 435897 species 40323 1 408 genus Stenotrophomonas 0 9 24659 1652 1 Stenotrophomonas nitritireducens 0 species 83617 Stenotrophomonas acidaminiphila 0 1 2629 128780 species 1 12052 0 species group 995085 0 Stenotrophomonas maltophilia 1 12052 40324 species 1176 1 0 Stenotrophomonas rhizophila species 216778 196198 no rank 0 6742 4 species 1827305 2318 1 0 Stenotrophomonas sp. MYb57 991 1 0 Stenotrophomonas sp. LM091 species 1904944 1853 1 0 Stenotrophomonas sp. WZN-1 species 2005046 Stenotrophomonas sp. KCTC 12332 0 1 1580 1793721 species 4435 3 Pseudoxanthomonas 0 genus 1 47 83618 314722 species 0 Pseudoxanthomonas suwonensis 1 3124 species 415229 1 1264 Pseudoxanthomonas spadix 0 338 1068 1 genus 0 Xanthomonas 17 40077 1 1646 0 Xanthomonas vesicatoria species 56460 643453 species group 0 2 8926 366648 species 0 Xanthomonas fuscans 1 2179 species 346 6747 1 Xanthomonas citri 0 48664 species 0 Xanthomonas fragariae 1 1765 species 1985254 1025 1 Xanthomonas phaseoli 0 Xanthomonas oryzae 0 1 6371 347 species species 339 1 6904 0 Xanthomonas campestris 53413 species 0 Xanthomonas axonopodis 1 803 species 442694 1 1174 Xanthomonas perforans 0 343 species 0 Xanthomonas translucens 1 3285 1010 1 Xanthomonas euvesicatoria 0 species 456327 Xanthomonas vasicola 0 1 837 56459 species species 56454 1250 1 0 Xanthomonas hortorum 29447 species 0 Xanthomonas albilineans 1237 1 0 Xanthomonas sacchari 1765 1 56458 species 1011 1 0 Xanthomonas alfalfae species 366650 83614 1 11 genus Luteimonas 0 2 1243 1232 1 0 Luteimonas sp. 100111 species 2006110 11576 14 0 Rhodanobacteraceae 123 1 family 1775411 Rhodanobacter 0 2 1869 75309 genus 1 14 1 1855 0 Rhodanobacter denitrificans species 666685 0 Dyella 4190 4 231454 94 1 genus species 1379159 1 1215 Dyella jiangningensis 0 231455 species Dyella japonica 0 1 1345 445710 species Dyella thiooxydans 0 1536 1 1 25 genus 323413 2 2084 Dokdonella 0 species 323415 2059 1 Dokdonella koreensis 0 genus 2233801 1024 1 0 0 Xanthomonadales bacterium D13 1 1024 2021234 species 70411 genus 15 1 0 Frateuria 2 1132 0 Frateuria aurantia 1117 1 81475 species 1 18 genus 242605 2 1154 Luteibacter 0 species 242606 1 1136 0 Luteibacter rhizovicinus 0 Alteromonadales 129185 105 135622 order 310 1 5 1 family 267892 3 1264 0 Ferrimonadaceae Ferrimonas 0 1259 2 44011 genus 1 7 species 44012 1 1252 0 Ferrimonas balearica 0 Idiomarinaceae 2967 6 267893 6 1 family 135575 52 1 genus 0 Idiomarina 2961 5 0 Idiomarina loihiensis 1 830 135577 species 1096243 species Idiomarina piscisalsi 0 1 721 0 1358 2 2614829 no rank 2055892 species Idiomarina sp. X4 0 679 1 679 1 Idiomarina sp. OT37-5b 0 species 2100422 25 28084 0 Shewanellaceae 50 1 family 267890 24 28034 0 Shewanella genus 380 1 22 24 species Shewanella putrefaciens 0 971 1 689 1 0 Shewanella marisflavi species 260364 species 93973 1 1564 0 Shewanella japonica 955 1 0 Shewanella pealeana species 70864 species 271098 2485 1 Shewanella halifaxensis 0 species 192073 1 1283 0 Shewanella denitrificans species 62322 1 2815 0 Shewanella baltica 0 Shewanella piezotolerans 1 1032 404011 species 2018305 species Shewanella bicestrii 0 743 1 species 70863 1 694 0 Shewanella oneidensis 1 952 Shewanella loihica 0 species 359303 1314 1 0 Shewanella frigidimarina species 56812 60961 species 0 Shewanella woodyi 1515 1 species 225848 2099 1 Shewanella psychrophila 0 no rank 196818 4620 6 0 species 94122 787 1 Shewanella sp. ANA-3 0 2029986 species 0 Shewanella sp. WE21 1 731 Shewanella sp. W3-18-1 0 848 1 351745 species species 60481 747 1 0 Shewanella sp. MR-7 1 605 0 Shewanella sp. MR-4 species 60480 0 Shewanella sp. Pdp11 1 902 2059264 species 1 1511 0 Shewanella sediminis species 271097 1 1537 0 Shewanella violacea species 60217 Shewanella amazonensis 0 875 1 60478 species 0 Psychromonadaceae 3615 4 267894 family 5 1 0 Psychromonas 3 3610 67572 genus 11 1 2614957 no rank 0 1703 1 1 1703 0 Psychromonas sp. CNPT3 species 314282 357794 species 0 Psychromonas ingrahamii 1896 1 Moritellaceae 0 2014 3 267891 family 1 16 0 Moritella 2 1998 58050 5 1 genus 1993 1 0 Moritella viscosa species 80854 0 Pseudoalteromonadaceae 44885 25 267888 33 1 family genus 682 1 53246 24 44852 0 Pseudoalteromonas 176102 species 0 Pseudoalteromonas agarivorans 1183 1 species 267375 1094 1 0 Pseudoalteromonas marina 1150 1 0 Pseudoalteromonas tetraodonis species 43659 1 1189 Pseudoalteromonas espejiana 0 species 28107 1363 1 Pseudoalteromonas arctica 0 species 394751 Pseudoalteromonas issachenkonii 0 1129 1 152297 species 5 8986 0 no rank 194690 1306 1 0 Pseudoalteromonas sp. 13-15 species 1761891 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 1437 1720343 species Pseudoalteromonas sp. Bsw20308 0 1 1324 283699 species 234831 species 0 Pseudoalteromonas sp. SM9913 1334 1 Pseudoalteromonas sp. NC201 0 3585 1 1514074 species species 43662 1063 1 0 Pseudoalteromonas piscicida 247523 species Pseudoalteromonas aliena 0 1417 1 161398 species 0 Pseudoalteromonas phenolica 3660 1 species 314281 1815 1 0 Pseudoalteromonas tunicata 1 8131 Pseudoalteromonas spongiae 0 species 298657 28109 species Pseudoalteromonas nigrifaciens 0 1212 1 species 288 1 2477 0 Pseudoalteromonas atlantica 0 Pseudoalteromonas translucida 1184 1 166935 species 1 3038 0 Pseudoalteromonas piratica species 1348114 species 43657 1 1758 Pseudoalteromonas luteoviolacea 0 0 Pseudoalteromonas haloplanktis 1278 1 228 species 43658 species 0 Pseudoalteromonas rubra 1 1043 72275 family 1 92 Alteromonadaceae 0 29 31769 genus 1 262 2742 11001 10 Marinobacter 0 0 Marinobacter salarius 1372 1 1420917 species species 1874317 1121 1 0 Marinobacter salinus species 1420916 1027 1 Marinobacter similis 0 0 Marinobacter hydrocarbonoclasticus 1478 1 2743 species 1 1051 Marinobacter adhaerens 0 species 1033846 83889 no rank 0 3388 3 1 1043 Marinobacter sp. BSs20148 0 species 490759 species 1671721 1160 1 Marinobacter sp. CP1 0 Marinobacter sp. LQ44 0 1 1185 1749259 species species 330734 1 1302 0 Marinobacter psychrophilus genus 261825 1086 1 0 0 Agarivorans gilvus 1086 1 680279 species 12429 10 Alteromonas 0 1 179 genus 226 2979 3 0 no rank 2614992 species 1917158 1 1025 0 Alteromonas sp. RW2A1 1 921 0 Alteromonas sp. MB-3u-76 species 2058133 1777491 species Alteromonas sp. Mac1 0 1 1033 0 Alteromonas macleodii 1 2413 28108 species 287094 species Alteromonas addita 0 1192 1 species 314275 2305 1 0 Alteromonas mediterranea 589873 species Alteromonas australica 0 1013 1 0 Alteromonas stellipolaris 1316 1 233316 species species 715451 1032 1 0 Alteromonas naphthalenivorans 1751872 7 1 genus 0 Lacimicrobium 1504 2 1526571 species 0 Lacimicrobium alkaliphilum 1 1497 genus 1 3 1621534 2828 2 Paraglaciecola 0 326544 species 0 Paraglaciecola psychrophila 1 2825 0 Glaciecola 2829 3 89404 26 1 genus 1 1376 0 no rank 2618684 species 983545 1 1376 0 Glaciecola sp. 4H-3-7+YE-5 species 300231 1427 1 Glaciecola nitratireducens 0 267889 1 27 family Colwelliaceae 0 14277 9 6 12090 0 Colwellia 75 1 genus 28228 7252 3 0 no rank 196834 58049 species Colwellia sp. MT41 0 1 2266 1816219 species Colwellia sp. PAMC 21821 0 1 2506 2480 1 0 Colwellia sp. PAMC 20917 species 1816218 species 28229 2403 1 Colwellia psychrerythraea 0 Colwellia beringensis 0 1 2360 1967665 species 1518149 genus 1 6 Thalassotalea 0 2160 2 species 1763536 2154 1 0 Thalassotalea crassostreae 135623 1 99 order Vibrionales 0 44 124223 1 271 family 641 43 124124 Vibrionaceae 0 30 90121 0 Vibrio 808 1 genus 662 860 1 Vibrio qinghaiensis 0 species 2025808 4325 1 0 Vibrio vulnificus species 672 29494 species Vibrio furnissii 0 1 1515 717610 species group 0 10 56473 Vibrio owensii 0 1 8482 696485 species 1 6164 Vibrio alginolyticus 0 species 663 1 2264 0 Vibrio jasicida species 766224 species 680 1 15651 0 Vibrio campbellii species 190895 1 9819 Vibrio rotiferianus 0 Vibrio harveyi 0 1 6283 669 species species 670 1 3426 0 Vibrio parahaemolyticus 0 2 2598 2315253 species subgroup species 50719 1 1716 Vibrio diabolicus 0 Vibrio antiquarius 0 882 1 150340 species 691 species 0 Vibrio natriegens 1786 1 666 species 0 Vibrio cholerae 1702 1 676 species 0 Vibrio fluvialis 1 1202 0 1 2156 1891919 species group 29498 species 0 Vibrio tubiashii 1 2156 1 946 Vibrio nigripulchritudo 0 species 28173 no rank 2614977 1484 2 0 species 1116375 1 897 Vibrio sp. EJY3 0 1 587 Vibrio sp. 2521-89 0 species 2014742 species 212663 1 3744 Vibrio tasmaniensis 0 species 1435069 1 1084 Vibrio tritonius 0 0 Vibrio breoganii 1 984 553239 species 0 Vibrio gazogenes 1314 1 687 species 55601 species 0 Vibrio anguillarum 2125 1 52443 species Vibrio tapetis 0 1 1672 1534743 species 0 Vibrio hyugaensis 1 1813 species 674 1291 1 0 Vibrio mimicus species 45658 1 1502 0 Vibrio scophthalmi Vibrio coralliilyticus 0 1 3121 190893 species 2 858 Grimontia 0 1 5 genus 246861 853 1 Grimontia hollisae 0 species 673 4 23842 Photobacterium 0 genus 1 20 657 species 1295392 895 1 Photobacterium gaetbulicola 0 Photobacterium profundum 0 1628 1 74109 species species 38293 1 21299 0 Photobacterium damselae genus 1 28 511678 4 5520 Aliivibrio 0 Aliivibrio wodanis 0 1 2600 80852 species 1 1589 0 Aliivibrio fischeri species 668 species 40269 1303 1 Aliivibrio salmonicida 0 3512 2 0 Paraphotobacterium 11 1 genus 2042066 1 3501 Paraphotobacterium marinum 0 species 1755811 129 229006 Pseudomonadales 0 order 1 762 72274 Pseudomonadaceae 0 172576 86 135621 family 1 863 286 1 4723 genus Pseudomonas 0 165006 80 0 Pseudomonas rhizosphaerae 1 975 216142 species 1639 1 0 Pseudomonas knackmussii species 65741 136845 species group 0 24147 6 1 1534 0 Pseudomonas oryzihabitans species 47885 303 species Pseudomonas putida 0 1 12848 1 1878 Pseudomonas fulva 0 species 47880 Pseudomonas plecoglossicida 0 1 955 70775 species 1 3431 0 Pseudomonas monteilii species 76759 Pseudomonas mosselii 0 3501 1 78327 species 0 Pseudomonas parafulva 2120 1 157782 species species group 136842 7738 2 0 species 587753 6144 1 Pseudomonas chlororaphis 0 296 species Pseudomonas fragi 0 1594 1 1660 1 Pseudomonas psychrotolerans 0 species 237610 2057 1 Pseudomonas koreensis 0 species 198620 1 2324 Pseudomonas frederiksbergensis 0 species 104087 1 2148 0 Pseudomonas brassicacearum species 930166 species group 136846 2 10886 0 578833 species subgroup 0 1 9546 9546 1 Pseudomonas stutzeri 0 species 316 species 74829 1 1340 0 Pseudomonas balearica 30 33000 0 no rank 196821 989 1 Pseudomonas sp. NC02 0 species 2067572 species 1856685 1513 1 Pseudomonas sp. TCU-HL1 0 1 749 0 Pseudomonas sp. FDAARGOS_380 species 2018067 1649877 species Pseudomonas sp. CCOS 191 0 1 1079 species 2083054 1 827 0 Pseudomonas sp. LG1D9 2069256 species Pseudomonas sp. XWY-1 0 857 1 species 1338689 1 788 Pseudomonas sp. JY-Q 0 species 1898684 1198 1 0 Pseudomonas sp. LPH1 862 1 0 Pseudomonas sp. GR 6-02 species 1659194 Pseudomonas sp. LH1G9 0 927 1 2083055 species 1931241 species Pseudomonas sp. S-6-2 0 1383 1 1500687 species 0 Pseudomonas sp. St29 995 1 1636610 species Pseudomonas sp. PONIH3 0 1 1073 species 1930532 2658 1 0 Pseudomonas sp. CC6-YY-74 1 720 Pseudomonas sp. MYb193 0 species 1827300 0 Pseudomonas sp. HLS-6 808 1 2049589 species 878 1 0 Pseudomonas sp. VLB120 species 69328 species 1028989 1 978 Pseudomonas sp. StFLB209 0 1534110 species Pseudomonas sp. DR 5-09 0 967 1 species 1611770 1 1200 Pseudomonas sp. MRSN12121 0 1207075 species Pseudomonas sp. UW4 0 1 821 species 1415630 1 2088 0 Pseudomonas sp. TKP 2083052 species Pseudomonas sp. SWI36 0 1 821 1500686 species 0 Pseudomonas sp. Os17 1009 1 0 Pseudomonas sp. SWI44 1 828 2083053 species 834 1 0 Pseudomonas sp. FGI182 species 1259844 Pseudomonas sp. ATCC 13867 0 1544 1 1294143 species 1 934 0 Pseudomonas sp. M30-35 species 1981174 1283291 species Pseudomonas sp. URMO17WK12:I11 0 1 1762 2083051 species Pseudomonas sp. SWI6 0 1 910 1583341 species 0 Pseudomonas cerasi 1082 1 0 Pseudomonas alkylphenolica 1 869 237609 species 8 14919 0 species group 136849 Pseudomonas viridiflava 0 751 1 33069 species 834 1 Pseudomonas cichorii 0 species 36746 species 46257 845 1 0 Pseudomonas avellanae 251695 species subgroup 0 6743 1 1 6743 0 Pseudomonas syringae species 317 251701 species Pseudomonas syringae group genomosp. 3 0 1975 1 2775504 no rank 0 843 1 species 1206777 1 843 0 Pseudomonas sp. Lz4W 2 2928 0 species subgroup 251698 1723 1 0 Pseudomonas savastanoi species 29438 47877 species 0 Pseudomonas amygdali 1 1205 species 312306 1112 1 0 Pseudomonas entomophila 6 23616 0 species group 136841 species 300 5118 1 0 Pseudomonas mendocina 3180 1 Pseudomonas citronellolis 0 species 53408 species 43263 1 1429 0 Pseudomonas alcaligenes 287 species Pseudomonas aeruginosa 0 9601 1 53412 species 0 Pseudomonas resinovorans 1823 1 1232139 species subgroup 0 2465 1 species 1149133 1 2465 0 Pseudomonas furukawaii species 1788301 858 1 Pseudomonas versuta 0 Pseudomonas cremoricolorata 0 1 856 157783 species species 101564 1 1211 0 Pseudomonas alcaliphila 136843 species group 0 23917 9 294 species 0 Pseudomonas fluorescens 14835 1 380021 species 0 Pseudomonas protegens 1 1587 species 200451 651 1 Pseudomonas poae 0 Pseudomonas veronii 0 1 808 76761 species 47879 species Pseudomonas corrugata 0 1 847 0 Pseudomonas trivialis 1 1396 200450 species 76758 species Pseudomonas orientalis 0 1 768 877 1 Pseudomonas mandelii 0 species 75612 Pseudomonas azotoformans 0 1 2148 47878 species 0 Pseudomonas silesiensis 1 1744 1853130 species Pseudomonas antarctica 0 664 1 219572 species species 244566 1 741 Pseudomonas lurida 0 Oblitimonas 0 1193 2 1849530 genus 1 2 0 Oblitimonas alkaliphila 1 1191 1697053 species 0 5514 3 351 subfamily Azotobacter 0 5514 3 352 genus 1 46 species 354 2009 1 0 Azotobacter vinelandii 0 Azotobacter chroococcum 1 3459 353 species 42 55668 0 Moraxellaceae 152 1 family 468 40912 25 Acinetobacter 0 genus 1 493 469 1077 1 0 species 202950 strain 62977 1 1077 Acinetobacter sp. ADP1 0 853 1 0 Acinetobacter johnsonii species 40214 1 1336 0 Acinetobacter bereziniae species 106648 1515 1 Acinetobacter haemolyticus 0 species 29430 Acinetobacter junii 0 1 1799 40215 species 1789224 species 0 Acinetobacter larvae 989 1 0 Acinetobacter oleivorans 1450 1 1148157 species 0 Acinetobacter soli 1010 1 487316 species 1950 1 0 Acinetobacter equi species 1324350 5 18373 0 species group 909768 0 Acinetobacter lactucae 1268 1 1785128 species species 106654 1903 1 0 Acinetobacter nosocomialis Acinetobacter calcoaceticus 0 1 2685 471 species 1 6029 0 Acinetobacter pittii species 48296 species 470 6488 1 Acinetobacter baumannii 0 0 7310 7 196816 no rank 1 1060 Acinetobacter sp. SWBY1 0 species 2079596 1 687 0 Acinetobacter sp. LoGeW2-3 species 1808001 Acinetobacter sp. ACNIH1 0 1 1356 1636603 species 1152 1 Acinetobacter sp. TGL-Y2 0 species 1407071 1 1183 0 Acinetobacter sp. ACNIH2 species 1758189 Acinetobacter sp. TTH0-4 0 1138 1 1646498 species 0 Acinetobacter sp. NCu2D-2 734 1 1608473 species 1 708 Acinetobacter indicus 0 species 756892 species 40216 919 1 Acinetobacter radioresistens 0 species 108981 1130 1 Acinetobacter schindleri 0 0 Moraxella 5114 5 475 66 1 genus species 386891 1093 1 0 Moraxella bovoculi 0 Moraxella osloensis 1994 1 34062 species Moraxella catarrhalis 0 1 1315 480 species Moraxella ovis 0 646 1 29433 species 0 Psychrobacter 9490 11 497 genus 286 1 species 261164 1198 1 Psychrobacter alimentarius 0 791 1 0 Psychrobacter cryohalolentis species 330922 1 988 Psychrobacter urativorans 0 species 45610 1 848 Psychrobacter arcticus 0 species 334543 196806 no rank 0 5379 6 0 Psychrobacter sp. AntiMn-1 695 1 1720344 species Psychrobacter sp. G 0 1 797 571800 species 1337 1 Psychrobacter sp. PRwf-1 0 species 349106 species 1028416 837 1 0 Psychrobacter sp. DAB_AL43B 1699622 species Psychrobacter sp. P2G3 0 1 888 species 1699624 825 1 0 Psychrobacter sp. P11G5 31350 29 0 Aeromonadales 126 1 order 135624 233 1 family 84642 31224 28 0 Aeromonadaceae genus 7 1 43947 687 2 0 Tolumonas Tolumonas auensis 0 680 1 43948 species 129577 genus 1 13 Oceanimonas 0 2 1368 no rank 2636315 1 1355 0 0 Oceanimonas sp. GK1 1 1355 511062 species 1 34 genus 347533 2378 2 Zobellella 0 Zobellella denitrificans 0 2344 1 347534 species 1 15 genus 225143 3 1569 Oceanisphaera 0 species 1903694 1 722 0 Oceanisphaera sp. AMac2203 0 Oceanisphaera profunda 832 1 1416627 species 0 Aeromonas 18 24989 642 genus 1193 1 683 1 Aeromonas caviae 0 species 648 954 1 0 Aeromonas rivipollensis species 948519 1059 1 0 Aeromonas media species 651 Aeromonas schubertii 0 1058 1 652 species 0 8 7219 257493 no rank 1636606 species 0 Aeromonas sp. ASNIH1 1226 1 2033033 species Aeromonas sp. CU5 0 1 809 2033032 species Aeromonas sp. CA23 0 1098 1 1758179 species Aeromonas sp. ASNIH5 0 953 1 1636609 species Aeromonas sp. ASNIH4 0 1 1076 species 1636607 729 1 Aeromonas sp. ASNIH2 0 1920107 species 0 Aeromonas sp. ASNIH7 603 1 1636608 species 0 Aeromonas sp. ASNIH3 1 725 654 species 0 Aeromonas veronii 1 2459 5491 1 0 Aeromonas hydrophila species 644 1 1050 0 Aeromonas aquatica species 558964 species 196024 905 1 0 Aeromonas dhakensis species 645 2918 1 0 Aeromonas salmonicida 33811 no rank 0 2 4998 3977 1 endosymbiont of unidentified scaly snail isolate Monju 0 species 1248727 83406 species gamma proteobacterium HdN1 0 1021 1 72273 44 1 order 0 Thiotrichales 49747 36 31682 15 Francisellaceae 0 1 48 family 34064 0 Francisella 29746 12 262 genus 427 1 1 1625 Francisella sp. TX077308 0 species 573569 2610885 no rank 0 3584 2 Francisella sp. MA067296 0 1 1611 475375 species 0 Francisella sp. FSC1006 1 1973 1547445 species Francisella persica 0 1405 1 954 species 1 2621 0 Francisella noatunensis species 657445 species 28110 1 4378 Francisella philomiragia 0 2365 1 Francisella sp. CA97-1460 0 species 1542390 4073 1 0 Francisella halioticida species 549298 species 622488 1 1760 0 Francisella hispaniensis 0 Francisella tularensis 1 5153 263 species Francisella sp. TX077310 0 1 2355 573570 species 1869285 genus 13 1 0 Allofrancisella 2 1888 Allofrancisella guangzhouensis 0 1 1875 594679 species 0 Thiotrichaceae 5 3450 135617 family 30 1 3 1 genus 40751 1589 2 0 Thioploca 1 1586 0 Thioploca ingrica species 40754 1021 genus 3 1 0 Beggiatoa 2 1831 species 288004 1828 1 Beggiatoa leptomitoformis 0 135616 67 1 family 0 Piscirickettsiaceae 15 14571 13 1 genus 1237 2317 2 0 Piscirickettsia 2304 1 0 Piscirickettsia salmonis species 1238 933 5 1 genus 0 Thiomicrospira 3 2319 92245 species 0 Thiomicrospira aerophila 1 1222 147268 species 0 Thiomicrospira cyclica 1092 1 1 105 genus 34067 5581 4 Cycloclasticus 0 2621467 no rank 0 3481 2 species 728003 1724 1 0 Cycloclasticus sp. PY97N 385025 species Cycloclasticus sp. P1 0 1 1757 1 1995 0 Cycloclasticus zancles species 1329899 genus 1 26 40222 3 2429 Methylophaga 0 species 754477 1 1179 Methylophaga frappieri 0 Methylophaga nitratireducenticrescens 0 1224 1 754476 species 2 1858 0 Hydrogenovibrio genus 5 1 28884 Hydrogenovibrio crunogenus 0 1853 1 39765 species 1240482 order 0 3618 5 Orbaceae 0 5 3618 1240483 1 23 family 1 4 genus 1193503 1884 2 Gilliamella 0 1196095 species Gilliamella apicola 0 1880 1 1335631 15 1 genus 0 Frischella 1711 2 species 1267021 1696 1 0 Frischella perrara order 795 1 91347 249797 252 0 Enterobacterales 40886 39 Yersiniaceae 0 family 1 142 1903411 13 1 genus 929812 2 830 0 Gibbsiella 929813 species 0 Gibbsiella quercinecans 1 817 Rahnella 0 2187 4 34037 1 44 genus 626 1 0 Rahnella aquatilis species 34038 2 1517 0 no rank 2635087 species 741091 623 1 Rahnella sp. Y9602 0 1805933 species Rouxiella sp. ERMR1:05 0 1 894 1565532 genus 0 Rouxiella 11 1 1745211 1 10 genus Chania 0 588 2 578 1 0 Chania multitudinisentens species 1639108 664 1 genus 613 21236 16 0 Serratia species 61652 1 993 Serratia rubidaea 0 0 Serratia ficaria 1 930 61651 species species 47917 1786 1 Serratia fonticola 0 82996 species 0 Serratia plymuthica 1578 1 species 614 1 950 Serratia liquefaciens 0 species 615 6453 1 0 Serratia marcescens 28151 species Serratia proteamaculans 0 607 1 2647522 no rank 0 7275 8 1 772 Serratia sp. MYb239 0 species 2033438 species 1327989 1 1097 Serratia sp. FS14 0 species 1758196 875 1 Serratia sp. SSNIH1 0 768490 species Serratia sp. AS12 0 1 519 Serratia sp. FGI94 0 1 852 671990 species Serratia sp. ATCC 39006 0 1 634 104623 species 768493 species 0 Serratia sp. AS13 1 519 species 488142 2007 1 0 Serratia sp. SCBI Yersinia 0 13 15892 629 genus 1 257 5652 3 0 species group 1649845 species 367190 1793 1 0 Yersinia similis species 632 1 1813 Yersinia pestis 0 633 species 0 Yersinia pseudotuberculosis 2046 1 29485 species 0 Yersinia rohdei 660 1 533 1 0 Yersinia aleksiciae species 263819 species 631 1 791 0 Yersinia intermedia 2653513 no rank 0 723 1 1 723 0 Yersinia sp. FDAARGOS_228 species 1839800 species 29483 1 644 Yersinia aldovae 0 0 Yersinia ruckeri 1 985 29486 species 689 1 0 Yersinia kristensenii species 28152 1910 1 0 Yersinia frederiksenii species 29484 1 3048 Yersinia enterocolitica 0 species 630 family 873 1 543 123 111953 0 Enterobacteriaceae 1 2 genus 1048757 280 2 Candidatus Moranella 0 species 1048758 1 278 0 Candidatus Moranella endobia Pluralibacter 0 3 2237 1330546 genus 1 16 Pluralibacter gergoviae 0 1407 1 61647 species 1334193 species 0 [Enterobacter] lignolyticus 1 814 1 48 genus 83654 4 2079 Leclercia 0 species 83655 716 1 Leclercia adecarboxylata 0 no rank 2627398 2 1315 0 682 1 Leclercia sp. LSNIH1 0 species 1920114 species 1920116 1 633 Leclercia sp. LSNIH3 0 no rank 191675 20 12657 0 84563 clade 0 20 12657 1682492 genus 1 3 Candidatus Tachikawaea 0 1726 2 species 1410383 1 1723 Candidatus Tachikawaea gelatinosa 0 796 1 0 genus 1906660 1778264 species Candidatus Mikella endobia 0 1 796 1906661 1 1 genus Candidatus Gullanella 0 681 2 680 1 0 Candidatus Gullanella endobia species 1070130 0 223 1 1906657 genus species 1778262 223 1 0 Candidatus Doolittlea endobia 316 2 Candidatus Hoaglandella 0 genus 1 1 1906659 0 Candidatus Hoaglandella endobia 1 315 1778263 species 0 2012 4 146507 clade 568987 genus 11 1 0 Candidatus Hamiltonella 2 799 species 138072 788 1 0 Candidatus Hamiltonella defensa species 134287 794 1 0 secondary endosymbiont of Heteropsylla cubana 1199245 species secondary endosymbiont of Ctenarytaina eucalypti 0 1 419 692 1 0 clade 199891 0 secondary endosymbiont of Trabutina mannipara 692 1 1835721 species 0 6211 7 84564 clade genus 59 1 203804 6211 7 0 Candidatus Blochmannia 251535 species 0 Candidatus Blochmannia vafer 1 1215 0 Candidatus Blochmannia chromaiodes 1 857 251542 species no rank 711328 2 2082 0 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 1039 1 1505597 species 1 1043 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 species 1505596 815 1 0 Candidatus Blochmannia pennsylvanicus species 101534 1 1183 0 Candidatus Blochmannia floridanus species 203907 2 653 Kluyvera 0 genus 1 4 579 649 1 0 Kluyvera intermedia species 61648 1330547 genus 1 69 Kosakonia 0 2870 5 species 1158459 596 1 Kosakonia sacchari 0 283686 species Kosakonia radicincitans 0 1 881 species 497725 1 730 0 Kosakonia oryzae 208223 species 0 Kosakonia cowanii 1 594 570 genus 426 1 0 Klebsiella 20078 10 species 1134687 1 1763 Klebsiella michiganensis 0 1036 1 0 Klebsiella quasipneumoniae species 1463165 2608929 no rank 0 1285 2 Klebsiella sp. M5al 0 1 588 1934254 species species 1905288 1 697 0 Klebsiella sp. LTGPAF-6F 244366 species Klebsiella variicola 0 1610 1 548 species Klebsiella aerogenes 0 3024 1 1 2887 Klebsiella oxytoca 0 species 571 1 7338 0 Klebsiella pneumoniae species 573 2026240 species 0 Klebsiella quasivariicola 709 1 22 14465 Enterobacter 0 genus 1 689 547 no rank 2608935 9 3420 0 species 1914861 1 529 0 Enterobacter sp. SA187 1 427 0 Enterobacter sp. FY-07 species 1692238 species 1977566 1 299 0 Enterobacter sp. Crenshaw species 2051905 1 391 Enterobacter sp. CRENT-193 0 species 1868135 281 1 0 Enterobacter sp. HK169 1560339 species Enterobacter sp. E20 0 1 258 497 1 0 Enterobacter sp. R4-368 species 1166130 0 Enterobacter sp. 638 1 428 399742 species 1827481 species 0 Enterobacter sp. ODB01 1 310 10356 12 0 species group 354276 no rank 2757714 1021 3 0 species 1915310 1 288 Enterobacter cloacae complex sp. ECNIH7 0 376 1 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 species 2077137 Enterobacter cloacae complex bacterium 0 357 1 2027919 species 1812935 species 0 Enterobacter cloacae complex 'Hoffmann cluster IV' 1 295 61645 species Enterobacter asburiae 0 1186 1 Enterobacter kobei 0 350 1 208224 species 69218 species 0 Enterobacter cancerogenus 411 1 0 Enterobacter ludwigii 372 1 299767 species 158836 species 1672 1 0 Enterobacter hormaechei 2382 3 subspecies 1296536 1 258 Enterobacter xiangfangensis 0 1 452 Enterobacter cloacae complex 'Hoffmann cluster III' 0 subspecies 1812934 0 Enterobacter cloacae 1 4339 550 species genus 56 1 561 13400 5 0 Escherichia Escherichia albertii 0 1 971 208962 species Escherichia fergusonii 0 343 1 564 species 1 448 0 Escherichia marmotae species 1499973 species 562 11582 1 0 Escherichia coli 1937 4 0 Lelliottia genus 18 1 1330545 470 1 0 Lelliottia nimipressuralis species 69220 459 1 0 Lelliottia jeotgali species 1907578 61646 species 0 Lelliottia amnigena 1 990 814 4 0 Shigella genus 31 1 620 622 species 0 Shigella dysenteriae 363 1 232 1 Shigella flexneri 0 species 623 1 188 0 no rank 2629414 1813821 species Shigella sp. PAMC 28760 0 188 1 Cedecea 0 2 1829 158483 genus 1 5 1 1824 0 Cedecea neteri species 158822 2 564 0 Shimwellia 4 1 genus 1335483 1 560 Shimwellia blattae 0 species 563 413496 genus 1 101 Cronobacter 0 8 4285 511 1 0 Cronobacter turicensis species 413502 0 Cronobacter muytjensii 557 1 413501 species 488 1 Cronobacter dublinensis 0 species 413497 535744 species 0 Cronobacter universalis 1 546 1 522 0 Cronobacter condimenti species 1163710 1 493 0 Cronobacter malonaticus species 413503 28141 species 0 Cronobacter sakazakii 1067 1 160674 genus 1 20 Raoultella 0 2753 3 species 575 1 705 Raoultella planticola 0 1 2028 0 Raoultella ornithinolytica species 54291 409304 1 1 genus 0 Candidatus Ishikawaella 2 1368 0 Candidatus Ishikawaella capsulata 1367 1 168169 species 0 4558 5 36866 no rank 0 Plautia stali symbiont 1 2505 891974 species species 1920128 497 1 0 Enterobacteriaceae bacterium ENNIH3 Enterobacteriaceae bacterium ENNIH2 0 538 1 1920109 species 693444 species Enterobacteriaceae bacterium strain FGI 57 0 455 1 species 2066051 1 563 Enterobacteriaceae bacterium ENNIH1 0 590 15 1 genus 0 Salmonella 11763 3 Salmonella enterica 0 10995 1 28901 species 0 Salmonella bongori 753 1 54736 species genus 338 1 544 11433 14 0 Citrobacter 1 558 Citrobacter koseri 0 species 545 0 Citrobacter farmeri 1966 1 67824 species species group 1344959 7 5829 0 species 2066049 1 390 0 Citrobacter freundii complex sp. CFNIH2 1 404 0 Citrobacter freundii complex sp. CFNIH9 species 2077149 Citrobacter werkmanii 0 908 1 67827 species 1 2376 0 Citrobacter freundii species 546 species 57706 899 1 Citrobacter braakii 0 0 Citrobacter freundii complex sp. CFNIH4 1 445 2077148 species 1 407 0 Citrobacter freundii complex sp. CFNIH3 species 2077147 67825 species 0 Citrobacter rodentium 1 534 species 35703 1 1303 0 Citrobacter amalonaticus 2644389 no rank 0 2 905 1920110 species 0 Citrobacter sp. CFNIH10 1 522 species 1702170 1 383 Citrobacter sp. FDAARGOS_156 0 genus 1 3 401618 1057 2 Candidatus Riesia 0 401619 species Candidatus Riesia pediculicola 0 1054 1 0 Erwiniaceae 38034 28 1903409 family 112 1 genus 1 68 51228 3385 2 Wigglesworthia 0 0 Wigglesworthia glossinidia 3317 1 51229 species 17469 2 Buchnera 0 1 39 genus 32199 0 Buchnera aphidicola 17430 1 9 species 2100764 genus 0 1903 2 species 665914 1 936 Pantoea gaviniae 0 species 665913 1 967 0 Pantoea calida 0 Erwinia 8 4756 551 genus 101 1 1 543 0 Erwinia tasmaniensis species 338565 1 549 Erwinia pyrifoliae 0 species 79967 1619313 species 0 Erwinia gerundensis 1 694 1 663 Erwinia amylovora 0 species 552 species 182337 958 1 Erwinia billingiae 0 1922217 species Candidatus Erwinia sp. ErCipseudotaxifoliae 0 1 749 499 1 0 no rank 2622719 215689 species 0 Erwinia sp. Ejp617 499 1 53335 1 313 genus Pantoea 0 11 9842 species 1891675 1 718 0 Pantoea alhagi 0 Pantoea rwandensis 1 576 1076550 species 1 1766 0 Pantoea vagans species 470934 1235990 species Candidatus Pantoea carbekii 0 1212 1 2630326 no rank 0 3 2314 Pantoea sp. PSNIH2 0 893 1 1484157 species 592316 species 0 Pantoea sp. At-9b 1 750 Pantoea sp. PSNIH1 0 1 671 1484158 species 0 1 1288 1654067 species group 0 Pantoea agglomerans 1 1288 549 species species 66269 593 1 Pantoea stewartii 0 0 Pantoea ananatis 1 1062 553 species 2 567 0 Tatumella genus 7 1 82986 560 1 Tatumella citrea 0 species 53336 0 Pectobacteriaceae 15859 20 1903410 61 1 family 1 10 genus 71655 957 2 Brenneria 0 1109412 species 0 Brenneria goodwinii 947 1 0 Pectobacterium 6 5512 122277 genus 104 1 55208 species 0 Pectobacterium wasabiae 643 1 1942 1 0 Pectobacterium carotovorum species 554 2042057 species 0 Pectobacterium polaris 697 1 species 29471 627 1 Pectobacterium atrosepticum 0 Pectobacterium parmentieri 0 1499 1 1905730 species 0 Sodalis 3967 5 84565 genus 100 1 Sodalis glossinidius 0 1 679 63612 species 1929246 species 0 Sodalis endosymbiont of Henestaris halophilus 1 1361 1486991 species Candidatus Sodalis pierantonius 0 1 986 species 1239307 1 841 0 Sodalis praecaptivus 5362 6 Dickeya 0 genus 1 120 204037 204039 species Dickeya dianthicola 0 1 763 species 204038 671 1 0 Dickeya dadantii 1 668 0 Dickeya fangzhongdai species 1778540 species 1089444 1 1135 Dickeya solani 0 Dickeya zeae 0 1 2005 204042 species 1903412 1 46 family Hafniaceae 0 22368 14 8 19620 Edwardsiella 0 genus 1 245 635 0 Edwardsiella piscicida 999 1 1263550 species 0 Edwardsiella ictaluri 1 817 67780 species 636 species Edwardsiella tarda 0 1 14051 2676541 no rank 0 1829 2 1650654 species Edwardsiella sp. LADL05-105 0 864 1 1 965 Edwardsiella sp. EA181011 0 species 1578828 573 1 Edwardsiella hoshinae 0 species 93378 1821960 species 0 Edwardsiella anguillarum 1106 1 genus 1 21 82982 2 714 Obesumbacterium 0 species 82983 1 693 0 Obesumbacterium proteus Hafnia 0 1988 3 568 1 57 genus 447 1 0 no rank 2621980 species 1848580 447 1 0 Hafnia sp. CBA7124 1484 1 Hafnia alvei 0 species 569 Morganellaceae 0 22 18036 1903414 family 1 84 586 1 30 genus Providencia 0 4 3682 species 588 1683 1 Providencia stuartii 0 1 812 0 Providencia alcalifaciens species 126385 1 1157 0 Providencia rettgeri species 587 0 Morganella 2 954 581 genus 12 1 582 species 0 Morganella morganii 1 942 genus 29 1 29487 4 3017 0 Photorhabdus 1 1109 0 Photorhabdus asymbiotica species 291112 0 Photorhabdus luminescens 1 1035 29488 species 574560 species 0 Photorhabdus temperata 1 844 626 1 43 genus Xenorhabdus 0 6 4121 351679 species 0 Xenorhabdus hominickii 732 1 676 1 Xenorhabdus doucetiae 0 species 351671 species 628 642 1 Xenorhabdus nematophila 0 40577 species 0 Xenorhabdus poinarii 1 701 40576 species 0 Xenorhabdus bovienii 1 1327 Arsenophonus 0 2 1582 637 genus 1 28 634113 species Arsenophonus symbiont of Lipoptena fortisetosa 0 1554 1 genus 13 1 583 3 4596 0 Proteus Proteus mirabilis 0 2907 1 584 species 1676 1 Proteus vulgaris 0 species 585 2 1168 0 no rank 451511 genus 4 1 702 2 1168 0 Plesiomonas species 703 1164 1 0 Plesiomonas shigelloides 0 Budviciaceae 3 698 1903416 11 1 family 0 Pragia 687 2 82984 genus 7 1 0 Pragia fontium 1 680 82985 species 118969 order 27 1 0 Legionellales 21 27072 118968 family 62 1 0 Coxiellaceae 3710 5 2323 3 0 Coxiella 28 1 genus 776 species 777 1 1254 0 Coxiella burnetii 1 1041 0 no rank 2676648 1041 1 Coxiella endosymbiont of Amblyomma americanum 0 species 325775 0 1 1325 134284 no rank 1592897 species Coxiella-like endosymbiont 0 1325 1 15 23335 0 Legionellaceae 83 1 family 444 genus 1 173 445 21893 12 Legionella 0 species 449 1347 1 Legionella hackeliae 0 species 96230 1794 1 0 Legionella fallonii 2005262 species 0 Legionella endosymbiont of Polyplax serrata 2071 1 0 Legionella pneumophila 1 6129 446 species species 29423 1272 1 0 Legionella oakridgensis species 28087 1 2029 Legionella sainthelensi 0 452 species Legionella spiritensis 0 778 1 0 Legionella waltersii 1 1515 66969 species 45067 species 0 Legionella lansingensis 1328 1 1867846 species 0 Legionella clemsonensis 1 1391 species 450 2066 1 Legionella longbeachae 0 2 1359 0 Tatlockia genus 11 1 465 451 species 0 Tatlockia micdadei 1348 1 1775403 order 1 25 Nevskiales 0 1247 4 family 2689614 2 1218 0 genus 1 37 469322 1218 2 Steroidobacter 0 species 465721 1181 1 0 Steroidobacter denitrificans 4 1 Sinobacteraceae 0 family 568386 12 1959 0 phylum 508458 class 1 17 649775 1959 12 Synergistia 0 11 1942 Synergistales 0 order 1 4 649776 1938 10 0 Synergistaceae family 3 1 649777 genus 5 1 508459 569 2 0 Cloacibacillus 1197717 species 0 Cloacibacillus porcorum 564 1 1 338 0 genus 49894 species 97477 1 338 0 Acetomicrobium mobile 0 Thermanaerovibrio 2 327 81461 4 1 genus 81462 species 0 Thermanaerovibrio acidaminovorans 323 1 336260 genus 1 1 Thermovirga 0 356 2 0 Thermovirga lienii 1 355 336261 species Aminobacterium 0 345 2 81466 genus 1 2 343 1 0 Aminobacterium colombiense species 81468 59 39324 0 phylum 203691 203692 1 113 class Spirochaetia 0 59 39324 136 order 86 1 0 Spirochaetales 42 24731 137 1 53 family Spirochaetaceae 0 9666 24 0 Salinispira 2 1376 1616789 1 1 genus 0 Salinispira pacifica 1 1375 1307761 species 0 Sediminispirochaeta 648 2 1911556 genus 1 1 647 1 0 Sediminispirochaeta smaragdinae species 55206 12 5110 0 Treponema 45 1 genus 157 2638727 no rank 0 1 341 0 Treponema sp. OMZ 838 341 1 1539298 species species 88058 676 1 0 Treponema primitia 0 Treponema succinifaciens 1 648 167 species 150829 species Treponema azotonutricium 0 1 372 Treponema putidum 0 1 664 221027 species species 158 506 1 Treponema denticola 0 1 505 0 Treponema caldarium species 215591 Treponema pallidum 0 190 1 160 species 409322 species 0 Treponema pedis 596 1 1 213 0 Treponema paraluiscuniculi species 53435 1 354 Treponema brennaborense 0 species 81028 146 genus 1 10 Spirochaeta 0 3 1417 Spirochaeta africana 0 1 677 46355 species 0 Spirochaeta thermophila 730 1 154 species 4 1062 0 Sphaerochaeta 4 1 genus 399320 1 342 0 Sphaerochaeta coccoides species 273376 species 1131703 343 1 0 Sphaerochaeta globosa 1 373 0 Sphaerochaeta pleomorpha species 1131707 42 1 family 1643685 17 14979 0 Borreliaceae 8464 8 Borrelia 0 genus 1 255 138 40834 species 0 Borrelia duttonii 1 2037 829 1 Borrelia hermsii 0 species 140 142 species Borrelia turicatae 0 1 833 1 1225 0 Borrelia recurrentis species 44449 141 species Borrelia parkeri 0 723 1 species 47466 1789 1 Borrelia miyamotoi 0 0 Borrelia anserina 1 773 143 species 6473 8 Borreliella 0 genus 1 423 64895 29518 species Borreliella afzelii 0 879 1 1 888 Borreliella bissettii 0 species 64897 0 Borrelia mayonii 1 922 1674146 species species 29519 1307 1 Borreliella garinii 0 0 Borreliella burgdorferi 1 934 139 species species 62088 607 1 Borreliella valaisiana 0 Borreliella bavariensis 0 513 1 664662 species order 1643688 6428 9 0 170 1 42 family Leptospiraceae 0 6428 9 genus 51 1 171 6 5734 0 Leptospira 1 571 0 Leptospira santarosai species 28183 species 173 1 2231 Leptospira interrogans 0 1 1091 0 Leptospira biflexa species 172 species 28452 1 790 Leptospira alstonii 0 1000 1 Leptospira borgpetersenii 0 species 174 338321 genus 1 4 Turneriella 0 2 652 species 29510 648 1 Turneriella parva 0 7 8052 Brachyspirales 0 order 1 25 1643686 0 Brachyspiraceae 6 8027 143786 6 1 family 0 Brachyspira 5 8021 29521 genus 34 1 1 1987 0 Brachyspira hyodysenteriae species 159 1 1985 0 Brachyspira intermedia species 84377 species 52584 1 2313 0 Brachyspira pilosicoli 84378 species 0 Brachyspira murdochii 1702 1 6013 14 0 phylum 40117 203693 class 1 34 Nitrospira 0 14 6013 13 5979 0 Nitrospirales order 72 1 189778 12 5907 0 Nitrospiraceae family 20 1 189779 0 Thermodesulfovibrio 1979 2 28261 genus 15 1 Thermodesulfovibrio yellowstonii 0 1 1964 28262 species 1252 4 0 Leptospirillum genus 17 1 179 species group 655606 505 1 0 180 species Leptospirillum ferrooxidans 0 1 505 species group 261385 1 359 0 species 1660083 1 359 Leptospirillum sp. Group II 'CF-1' 0 1 371 0 species group 261386 0 Leptospirillum ferriphilum 371 1 178606 species Nitrospira 0 5 2656 1234 1 26 genus 1325564 species 0 Nitrospira japonica 583 1 species 1715989 1 545 0 Candidatus Nitrospira inopinata species 42253 967 1 Nitrospira moscoviensis 0 1 535 0 Nitrospira defluvii species 330214 5949 10 0 phylum 200930 0 Deferribacteres 5949 10 68337 20 1 class order 1 15 191393 9 5929 Deferribacterales 0 0 Deferribacteraceae 8 5914 191394 29 1 family 53572 genus 1 10 Deferribacter 0 2735 2 0 Deferribacter desulfuricans 2725 1 197162 species 2 886 0 Denitrovibrio genus 5 1 117999 species 118000 1 881 Denitrovibrio acetiphilus 0 4 1 genus 545865 1027 2 0 Calditerrivibrio 1 1023 0 Calditerrivibrio nitroreducens species 477976 0 1 1237 2351 genus 1 1237 Flexistipes sinusarabici 0 species 2352 phylum 1930617 5 1477 0 0 Calditrichae 1477 5 1962850 10 1 class 1962852 order 1 7 Calditrichales 0 1467 4 2 1 family 1962854 3 1460 0 Calditrichaceae 187144 1 2 genus Caldithrix 0 2 1458 Caldithrix abyssi 0 1 1456 187145 species 0 787 5 200938 phylum 787 5 0 Chrysiogenetes 1 1 class 118001 4 786 Chrysiogenales 0 1 9 order 189769 0 Chrysiogenaceae 777 3 189770 2 1 family 775 2 Desulfurispirillum 0 genus 1 5 393029 1 770 Desulfurispirillum indicum 0 species 936456 20 8485 0 phylum 57723 17 7704 Acidobacteriia 0 1 38 class 204432 order 65 1 204433 5840 12 0 Acidobacteriales 0 Acidobacteriaceae 11 5775 204434 41 1 family 33973 1 19 genus Acidobacterium 0 1365 2 0 Acidobacterium capsulatum 1346 1 33075 species 658061 23 1 genus 0 Candidatus Koribacter 2 931 Candidatus Koribacter versatilis 0 1 908 658062 species 1566 3 0 Terriglobus genus 29 1 392733 729 1 0 Terriglobus roseus species 392734 808 1 Terriglobus saanensis 0 species 870903 Granulicella 0 1872 3 940557 1 19 genus 0 Granulicella tundricola 1049 1 940615 species 1 804 0 Granulicella mallensis species 940614 Solibacterales 0 4 1826 332160 1 21 order 1805 3 0 Solibacteraceae 5 1 family 332161 2 1800 Candidatus Solibacter 0 genus 1 13 332162 1787 1 Candidatus Solibacter usitatus 0 species 332163 class 1 1 1562566 781 3 Blastocatellia 0 7 1 genus 458032 780 2 0 Chloracidobacterium 458033 species 0 Chloracidobacterium thermophilum 773 1 200940 phylum 0 4180 9 0 Thermodesulfobacteria 4180 9 67799 class 10 1 11 1 order 188710 4170 8 0 Thermodesulfobacteriales 4159 7 Thermodesulfobacteriaceae 0 1 22 family 188711 0 1 675 444090 genus 1653476 species Caldimicrobium thiodismutans 0 1 675 1740 14 1 genus 0 Thermodesulfobacterium 2880 3 Thermodesulfobacterium geofontis 0 1 2051 1295609 species 1 815 Thermodesulfobacterium commune 0 species 1741 241192 1 2 genus Thermodesulfatator 0 2 582 Thermodesulfatator indicus 0 1 580 171695 species 2138240 phylum 0 5 484 0 Coprothermobacteria 5 484 2138243 8 1 class 476 4 0 Coprothermobacterales 1 1 order 2138246 2138247 1 1 family Coprothermobacteraceae 0 475 3 68335 genus 1 1 Coprothermobacter 0 474 2 1 473 0 Coprothermobacter proteolyticus species 35786 7520738 1712 0 clade 1783272 201174 phylum 24 1 0 Actinobacteria 653 700373 0 Actinobacteria 675747 597 1760 class 2234 1 0 Candidatus Nanopelagicales 12 6543 2039638 order 36 1 family 2162846 11 6507 0 20 1 genus 2039639 4 2934 0 Candidatus Nanopelagicus 0 Candidatus Nanopelagicus abundans 1 1073 1884916 species 1 872 0 Candidatus Nanopelagicus hibericus species 1884915 species 1884634 969 1 Candidatus Nanopelagicus limnes 0 3573 7 Candidatus Planktophila 0 1 36 genus 622681 species 573600 592 1 0 Candidatus Planktophila limnetica 1884914 species Candidatus Planktophila dulcis 0 662 1 0 Candidatus Planktophila lacus 1 631 1884913 species species 1884904 364 1 Candidatus Planktophila sulfonica 0 1884905 species 0 Candidatus Planktophila versatilis 1 668 species 1884907 620 1 Candidatus Planktophila vernalis 0 0 Catenulisporales 4 6485 414714 33 1 order 3 6452 Catenulisporaceae 0 1 44 family 414877 2 6408 0 Catenulispora 20 1 genus 414878 304895 species 0 Catenulispora acidiphila 1 6388 3 1756 0 order 85014 1 40 family 85034 1756 3 Glycomycetaceae 0 0 Stackebrandtia 2 1716 283810 10 1 genus Stackebrandtia nassauensis 0 1 1706 283811 species 85010 1 104 order Pseudonocardiales 0 62818 42 2070 family 544 1 0 Pseudonocardiaceae 41 62714 1847 283 1 genus 0 Pseudonocardia 8 16272 240495 species 0 Pseudonocardia dioxanivorans 2672 1 2619320 no rank 0 13317 6 species 1690815 1 2017 Pseudonocardia sp. HH130630-07 0 species 1096856 2312 1 0 Pseudonocardia sp. EC080619-01 1 2124 Pseudonocardia sp. HH130629-09 0 species 1641402 0 Pseudonocardia sp. AL041005-10 2370 1 445576 species species 1096868 1 2067 Pseudonocardia sp. EC080625-04 0 Pseudonocardia sp. EC080610-09 0 1 2427 1688404 species 1 16 genus 2071 2719 2 Saccharothrix 0 species 103731 2703 1 Saccharothrix espanaensis 0 11 1 genus 1835 2 2213 0 Saccharopolyspora species 1836 1 2202 0 Saccharopolyspora erythraea 674734 genus 1 8 Alloactinosynnema 0 2 2044 no rank 2636053 2036 1 0 1653480 species 0 Alloactinosynnema sp. L-07 2036 1 genus 127 1 65496 6 8957 0 Actinoalloteichus no rank 2644606 2 3487 0 species 1612551 1796 1 Actinoalloteichus sp. GBA129-24 0 2072503 species Actinoalloteichus sp. AHMU CJ021 0 1691 1 0 Actinoalloteichus hoggarensis 1 1979 1470176 species species 1612552 1 2169 Actinoalloteichus sp. ADI127-7 0 340345 species 0 Actinoalloteichus hymeniacidonis 1195 1 0 Kutzneria 2 2168 43356 37 1 genus 0 Kutzneria albida 2131 1 43357 species 7 15027 0 Amycolatopsis 162 1 genus 1813 no rank 2618356 2 4089 0 2005 1 Amycolatopsis sp. BJA-103 0 species 1911175 1896961 species Amycolatopsis sp. AA4 0 2084 1 0 Amycolatopsis japonica 1 1985 208439 species 1814 species 0 Amycolatopsis methanolica 2089 1 species 31958 3746 1 0 Amycolatopsis orientalis 1 2956 Amycolatopsis mediterranei 0 species 33910 142577 genus 11 1 0 Prauserella 2 1495 1484 1 0 Prauserella marina species 530584 3 5412 0 Actinosynnema 86 1 genus 40566 1 2559 0 Actinosynnema pretiosum species 42197 1 2767 0 Actinosynnema mirum species 40567 2 2573 0 Lentzea 8 1 genus 165301 1586287 species 0 Lentzea guizhouensis 2565 1 0 Kibdelosporangium 2 2327 2029 genus 4 1 species 860235 2323 1 0 Kibdelosporangium phytohabitans 3 1 genus 1851 963 2 0 Saccharomonospora Saccharomonospora viridis 0 960 1 1852 species Acidothermales 0 595 4 1643683 order 1 6 Acidothermaceae 0 3 589 85032 family 1 7 Acidothermus 0 2 582 28048 genus 1 15 species 28049 567 1 Acidothermus cellulolyticus 0 0 Nakamurellales 4 1494 1643684 order 5 1 85031 family 18 1 0 Nakamurellaceae 1489 3 53460 genus 15 1 0 Nakamurella 2 1471 species 53461 1 1456 0 Nakamurella multipartita 1643818 no rank 0 1328 2 147067 1 19 genus Thermobispora 0 2 1328 Thermobispora bispora 0 1309 1 2006 species 961 4 Actinopolysporales 0 order 1 3 622450 958 3 Actinopolysporaceae 0 family 1 5 622451 2 953 Actinopolyspora 0 genus 1 22 1849 species 414996 931 1 Actinopolyspora erythraea 0 85008 order 1 37 Micromonosporales 0 27052 20 28056 family 1 208 Micromonosporaceae 0 27015 19 84593 genus Verrucosispora 0 8 1 genus 83 1 673534 6474 4 0 Plantactinospora no rank 2631981 3 6391 0 species 2024580 1 1921 0 Plantactinospora sp. KBS50 2108470 species 0 Plantactinospora sp. BC1 1 2218 2252 1 Plantactinospora sp. BB1 0 species 2071627 168694 1 36 genus Salinispora 0 3 2449 168695 species Salinispora tropica 0 1243 1 0 Salinispora arenicola 1 1170 168697 species 0 Actinoplanes 6 11802 1865 genus 171 1 1 2414 0 Actinoplanes missouriensis species 1866 species 196914 2338 1 0 Actinoplanes friuliensis 0 6879 3 2626549 no rank 2237 1 0 Actinoplanes sp. SE50 species 2033844 species 134676 1 2237 0 Actinoplanes sp. SE50/110 species 649831 2405 1 Actinoplanes sp. N902-109 0 0 Micromonospora 6074 4 1873 56 1 genus 47850 species 0 Micromonospora aurantiaca 2107 1 2069 1 0 no rank 2617518 species 648999 1 2069 Micromonospora sp. L5 0 1003110 species Verrucosispora maris 0 1 1842 Micrococcales 0 144 107166 85006 order 1 560 1 6 family 85022 2 266 Jonesiaceae 0 43673 genus 0 1 260 species 43674 260 1 0 Jonesia denitrificans 0 2 2091 125316 family genus 27 1 84756 2091 2 0 Beutenbergia species 84757 1 2064 0 Beutenbergia cavernae 1 182 family 1268 37 23048 Micrococcaceae 0 12071 15 Arthrobacter 0 genus 1 148 1663 species 37928 1 839 Arthrobacter crystallopoietes 0 no rank 235627 12 9732 0 species 1690248 1 710 0 Arthrobacter sp. LS16 Arthrobacter sp. YC-RL1 0 1 754 1652545 species species 1849032 1016 1 0 Arthrobacter sp. U41 1 507 0 Arthrobacter sp. Rue61a species 1118963 species 2020486 550 1 Arthrobacter sp. YN 0 Arthrobacter sp. ZXY-2 0 1 633 1806905 species Arthrobacter sp. FB24 0 1 777 290399 species 0 Arthrobacter sp. ERGS1:01 1 856 1704044 species 1494608 species 0 Arthrobacter sp. PAMC 25486 761 1 0 Arthrobacter sp. QXT-31 1 786 1357915 species species 2079227 1 1852 0 Arthrobacter sp. PGP41 species 1771959 530 1 Arthrobacter sp. ATCC 21022 0 656366 species 0 Arthrobacter alpinus 1352 1 32207 genus 0 2 693 207 1 0 Rothia dentocariosa species 2047 0 Rothia mucilaginosa 1 486 43675 species 0 Neomicrococcus 370 2 1868332 genus 3 1 367 1 0 Neomicrococcus aestuarii species 556325 1 8 genus 1269 1078 2 Micrococcus 0 species 1270 1070 1 0 Micrococcus luteus 2078575 genus 0 1 416 1618207 species 0 Arthrobacter sp. IHBB 11108 416 1 4 2789 Kocuria 0 1 28 genus 57493 72000 species 0 Kocuria rhizophila 1 623 1 1195 0 Kocuria flava species 446860 species 71999 943 1 0 Kocuria palustris genus 1742992 638 1 0 Paenarthrobacter aurescens 0 1 638 43663 species 3 1 genus 1742989 2 880 0 Glutamicibacter 877 1 Glutamicibacter arilaitensis 0 species 256701 1 357 0 genus 1645 species 1646 1 357 0 Renibacterium salmoninarum 1742993 genus 14 1 0 Pseudarthrobacter 4 2282 Pseudarthrobacter phenanthrenivorans 0 799 1 361575 species 696 1 Pseudarthrobacter chlorophenolicus 0 species 85085 121292 species Pseudarthrobacter sulfonivorans 0 773 1 genus 10 1 596707 1292 2 0 Sinomonas 37927 species Sinomonas atrocyanea 0 1 1282 0 Intrasporangiaceae 9 6424 85021 39 1 family 0 Serinicoccus 2 1556 265976 11 1 genus 1758689 species 0 Serinicoccus sp. JLT9 1 1545 Intrasporangium 0 1802 2 53357 1 8 genus 1794 1 Intrasporangium calvum 0 species 53358 53457 genus 26 1 0 Janibacter 1592 2 1566 1 Janibacter indicus 0 species 857417 Arsenicicoccus 0 1435 2 267408 1 15 genus 1 1420 0 no rank 2663846 1420 1 Arsenicicoccus sp. oral taxon 190 0 species 1658671 no rank 577468 238 2 0 0 Tropheryma 2 238 2038 3 1 genus 0 Tropheryma whipplei 235 1 2039 species 85016 1 23 family Cellulomonadaceae 0 6395 6 1707 1 81 genus Cellulomonas 0 5 6372 Cellulomonas fimi 0 1 1750 1708 species 1396 1 0 no rank 2620175 0 Cellulomonas sp. PSBB021 1396 1 2003551 species 11 species Cellulomonas gilvus 0 1314 1 0 Cellulomonas flavigena 1 1831 1711 species 85019 1 22 family Brevibacteriaceae 0 1568 3 2 1546 0 Brevibacterium genus 6 1 1696 1703 species Brevibacterium linens 0 1 1540 145360 family 1 10 Sanguibacteraceae 0 1570 3 0 Sanguibacter 1560 2 60919 4 1 genus 60920 species 0 Sanguibacter keddieii 1 1556 85020 34 1 family 0 Dermabacteraceae 10059 10 36739 genus 0 504 1 1 504 0 Dermabacter vaginalis species 1630135 102 1 genus 43668 8904 6 0 Brachybacterium species 1331682 1239 1 Brachybacterium ginsengisoli 0 1 1318 0 Brachybacterium faecium species 43669 1 3567 Brachybacterium sp. VM2412 0 species 2017484 1 1489 0 no rank 2623841 Brachybacterium sp. P6-10-X1 0 1 1489 1903186 species species 2017485 1189 1 0 Brachybacterium sp. VR2415 617 2 Devriesea 0 1 26 genus 472568 species 472569 1 591 0 Devriesea agamarum 145357 1 25 family Dermacoccaceae 0 3361 7 57495 23 1 genus 0 Dermacoccus 1173 2 1150 1 0 Dermacoccus nishinomiyaensis species 1274 57499 21 1 genus 0 Kytococcus 2 954 species 1276 933 1 Kytococcus sedentarius 0 Luteipulveratus 0 2 1209 745364 genus 1 6 571913 species 0 Luteipulveratus mongoliensis 1 1203 0 Promicromonosporaceae 9512 9 85017 41 1 family 186188 16 1 genus 0 Xylanimonas 1806 2 186189 species 0 Xylanimonas cellulosilytica 1 1790 4125 3 0 Cellulosimicrobium genus 17 1 157920 1827 1 Cellulosimicrobium cellulans 0 species 1710 2624466 no rank 0 1 2281 species 1980001 1 2281 0 Cellulosimicrobium sp. TH-20 254250 1 22 genus Isoptericola 0 3 3540 species 372663 1 1891 Isoptericola dokdonensis 0 0 Isoptericola variabilis 1 1627 139208 species family 1 269 85023 41575 50 Microbacteriaceae 0 1 31 genus 69578 2068 3 Cryobacterium 0 1 919 0 no rank 2649013 1 919 0 Cryobacterium sp. LW097 species 1978566 0 Cryobacterium arcticum 1 1118 670052 species 1 2 genus 1434032 311 2 Pontimonas 0 1159327 species 0 Pontimonas salivibrio 309 1 3 1893 0 Rathayibacter genus 2 1 33886 33888 species Rathayibacter tritici 0 1 1009 145458 species 0 Rathayibacter toxicus 1 882 33877 5 1 genus 0 Agromyces 2 1800 species 453304 1 1795 0 Agromyces aureus 0 Frondihabitans 2886 2 447237 genus 7 1 1 2879 0 no rank 2626248 species 1795630 1 2879 Frondihabitans sp. PAMC 28766 0 0 Curtobacterium 4049 4 2034 32 1 genus 1372 1 0 Curtobacterium pusillum species 69373 257496 no rank 0 2645 2 1347 1 0 Curtobacterium sp. MR_MD2014 species 1561023 1905847 species 0 Curtobacterium sp. BH-2-1-1 1298 1 0 Microterricola 2 1034 518733 11 1 genus Microterricola viridarii 0 1023 1 412690 species genus 1 208 33882 15547 14 Microbacterium 0 1 1119 0 Microbacterium aurum species 36805 84292 species Microbacterium chocolatum 0 952 1 no rank 2609290 8 9524 0 1906742 species Microbacterium sp. BH-3-3-3 0 1 1552 1938334 species 0 Microbacterium sp. TPU 3598 1 1090 Microbacterium sp. CGR1 0 1 934 1696072 species species 1795053 1 1156 0 Microbacterium sp. PAMC 28756 367477 species 0 Microbacterium sp. XT11 871 1 species 1916917 995 1 Microbacterium sp. 1.5R 0 1011 1 Microbacterium sp. str. 'China' 0 species 2103230 1714373 species 0 Microbacterium sp. No. 7 1915 1 1 1261 0 Microbacterium testaceum species 2033 Microbacterium hominis 0 1 1390 162426 species 0 Microbacterium paludicola 1 1093 300019 species 0 Cnuibacter 1409 2 1759331 2 1 genus 0 Cnuibacter physcomitrellae 1407 1 1619308 species 0 3 647 1655488 no rank 3 647 0 clade 1655489 0 Rhodoluna 647 3 529883 genus 15 1 species 535712 1 315 0 Candidatus Rhodoluna planktonica 529884 species Rhodoluna lacicola 0 1 317 0 Microcella 806 2 337004 genus 2 1 279828 species 0 Microcella alkaliphila 804 1 Aurantimicrobium 0 2 274 1705353 1 1 genus 273 1 0 Aurantimicrobium minutum species 708131 6 6255 0 Clavibacter genus 121 1 1573 1 1297 species 28447 6134 5 Clavibacter michiganensis 0 1 1078 Clavibacter insidiosus 0 subspecies 33014 0 Clavibacter nebraskensis 1 1133 31963 subspecies 31964 subspecies 0 Clavibacter sepedonicus 1 1393 1874630 subspecies 0 Clavibacter capsici 1 1233 110932 genus 4 1 0 Leifsonia 2 2327 species 1575 1 2323 Leifsonia xyli 0 85018 family 1 6 Dermatophilaceae 0 499 3 genus 2 1 1862 2 493 0 Dermatophilus species 1863 1 491 Dermatophilus congolensis 0 16 14897 0 Streptosporangiales order 60 1 85012 1 52 family 83676 6063 7 Nocardiopsaceae 0 5295 4 Nocardiopsis 0 genus 1 61 2013 1249 1 Nocardiopsis alba 0 species 53437 2014 species 0 Nocardiopsis dassonvillei 1 2309 1676 1 Nocardiopsis gilva 0 species 280236 83677 1 2 genus Thermobifida 0 716 2 714 1 0 Thermobifida fusca species 2021 1 63 family 2004 5 7064 Streptosporangiaceae 0 83681 10 1 genus 0 Nonomuraea 3911 2 0 3901 1 2593643 no rank 3901 1 Nonomuraea sp. ATCC 55076 0 species 1909395 2 3090 0 Streptosporangium 25 1 genus 2000 2001 species Streptosporangium roseum 0 1 3065 2012 10 1 family 0 Thermomonosporaceae 3 1710 2019 genus 1 7 Thermomonospora 0 2 1700 1693 1 0 Thermomonospora curvata species 2020 2037 order 23 1 0 Actinomycetales 8278 19 18 8255 Actinomycetaceae 0 1 91 family 2049 28263 1 8 genus Arcanobacterium 0 2 263 Arcanobacterium haemolyticum 0 255 1 28264 species genus 1653174 1 315 0 species 59505 1 315 0 Actinotignum schaalii 0 Actinomyces 6310 9 1654 genus 139 1 685 1 Actinomyces gaoshouyii 0 species 1960083 0 2860 3 2609248 no rank 0 Actinomyces sp. oral taxon 414 1111 1 712122 species 774 1 0 Actinomyces sp. oral taxon 897 species 2081702 1851395 species 0 Actinomyces sp. Chiba101 975 1 1 221 Actinomyces pacaensis 0 species 1852377 Actinomyces oris 0 1 741 544580 species 1 209 Actinomyces sp. VUL4_3 0 species 1912795 species 111015 1 1455 Actinomyces radicidentis 0 1 13 genus 1069494 2 538 Trueperella 0 1 525 0 Trueperella pyogenes species 1661 2050 1 5 genus Mobiluncus 0 2 364 species 2051 359 1 Mobiluncus curtisii 0 1 374 0 genus 2529408 374 1 Actinomyces meyeri 0 species 52773 161 156657 Corynebacteriales 0 1 698 order 85007 85025 1 144 family Nocardiaceae 0 31 44828 174 1 genus 1817 7 13767 0 Nocardia 1746 1 0 Nocardia terpenica species 455432 0 Nocardia brasiliensis 1 3607 37326 species 37332 species Nocardia seriolae 0 1600 1 37329 species Nocardia farcinica 0 1 2227 0 Nocardia cyriacigeorgica 1 2724 135487 species 1 1689 0 Nocardia nova species 37330 genus 814 1 1827 23 30917 0 Rhodococcus 12 12076 0 no rank 192944 1570939 species Rhodococcus sp. 2G 0 1065 1 species 1653479 854 1 0 Rhodococcus sp. PBTS 2 1564114 species 0 Rhodococcus sp. B7740 817 1 species 1653478 1 1300 0 Rhodococcus sp. PBTS 1 1805827 species 0 Rhodococcus sp. MTM3W5.2 1489 1 1163 1 Rhodococcus sp. p52 0 species 935199 1 701 Rhodococcus sp. 008 0 species 1723645 1 1994 Rhodococcus sp. WB1 0 species 1033922 663 1 0 Rhodococcus sp. BH4 species 1807790 1 594 0 Rhodococcus sp. WMMA185 species 679318 1 736 Rhodococcus sp. H-CA8f 0 species 1727214 1045808 species 0 Rhodococcus sp. YL-1 1 700 1441 1 0 Rhodococcus pyridinivorans species 103816 43767 species Rhodococcus hoagii 0 1496 1 191292 species Rhodococcus aetherivorans 0 1870 1 species 37919 4653 1 Rhodococcus opacus 0 1828 species Rhodococcus fascians 0 1038 1 2052 1 0 Rhodococcus jostii species 132919 species 1833 1589 1 Rhodococcus erythropolis 0 1949 1 Rhodococcus ruber 0 species 1830 1 653 Rhodococcus qingshengii 0 species 334542 species 1829 1 1286 0 Rhodococcus rhodochrous Dietziaceae 0 2137 4 85029 1 7 family 2130 3 0 Dietzia 11 1 genus 37914 499555 species 0 Dietzia timorensis 754 1 2617939 no rank 0 1365 1 1365 1 Dietzia sp. oral taxon 368 0 species 712270 1762 164 1 family 0 Mycobacteriaceae 68077 57 1073531 genus 0 2239 2 species 1788 991 1 Mycobacterium terrae 0 875328 species Mycobacterium sinense 0 1248 1 697025 genus 12 1 0 Hoyosella 2 632 1 620 0 Hoyosella subflava species 639313 1 2075 genus 1763 34 37779 Mycobacterium 0 species 1768 1222 1 Mycobacterium kansasii 0 29311 species Mycobacterium haemophilum 0 1 560 261524 species Mycobacterium liflandii 0 1 1104 0 1 1069 2249310 species group 722731 species Mycobacterium shigaense 0 1 1069 3033 4 0 species group 77643 598 1 Mycobacterium canettii 0 species 78331 1773 907 1 species 0 Mycobacterium tuberculosis 2435 3 biotype 1765 1 775 Mycobacterium bovis 0 Mycobacterium africanum 0 753 1 33894 biotype 1769 species 0 Mycobacterium leprae 1 202 species 1781 1 1613 Mycobacterium marinum 0 14391 13 0 no rank 2642494 species 1682113 1 1206 Mycobacterium sp. YC-RL4 0 1 635 Mycobacterium sp. QIA-37 0 species 1561223 species 2051552 1319 1 0 Mycobacterium sp. PYR15 1 1343 0 Mycobacterium sp. KMS species 189918 212767 species Mycobacterium sp. JS623 0 1 1452 Mycobacterium sp. VKM Ac-1817D 0 987 1 1273687 species Mycobacterium sp. djl-10 0 1309 1 1879023 species 1 1183 Mycobacterium sp. WY10 0 species 1920667 species 1168287 1 345 Mycobacterium sp. MOTT36Y 0 963 1 Mycobacterium sp. NRRL B-3805 0 species 1570328 species 164757 1 1287 Mycobacterium sp. JLS 0 Mycobacterium sp. MCS 0 1254 1 164756 species 1 1108 Mycobacterium sp. EPa45 0 species 1545728 482462 species 0 Mycobacterium dioxanotrophicus 1518 1 0 Mycobacterium ulcerans 1147 1 1809 species 9845 8 0 species group 120793 414 1 0 Mycobacterium paraintracellulare species 1138383 4 2723 0 Mycobacterium intracellulare 673 1 species 1767 222805 subspecies Mycobacterium chimaera 0 1152 1 35617 subspecies 0 Mycobacterium indicus pranii 1 396 1 502 Mycobacterium yongonense 0 subspecies 1203599 species 701042 1 879 Mycobacterium marseillense 0 1764 species Mycobacterium avium 0 1 4601 species 339268 1 1228 Mycobacterium colombiense 0 genus 670516 7923 5 0 83262 species 0 Mycobacterium immunogenum 1 833 species 36809 1 4982 0 Mycobacterium abscessus species 1774 1 723 0 Mycobacterium chelonae species 1578165 1 672 0 Mycobacterium saopaulense 0 Mycobacterium stephanolepidis 713 1 1520670 species 19340 13 0 genus 1866885 1804 species 0 Mycobacterium gilvum 1 2147 1 983 Mycobacterium fortuitum 0 species 1766 1 1599 Mycobacterium vanbaalenii 0 species 110539 Mycobacterium neoaurum 0 963 1 1795 species 0 Mycobacterium rhodesiae 1238 1 36814 species 1797 species Mycobacterium thermoresistibile 0 1186 1 1800 species 0 Mycobacterium chubuense 1 1665 species 1772 1 1663 0 Mycobacterium smegmatis species 1771 1 1725 Mycobacterium phlei 0 0 Mycobacterium vaccae 1638 1 1810 species 1 1254 0 Mycobacterium litorale species 758802 species 134601 1454 1 Mycobacterium goodii 0 1825 1 0 Mycobacterium aurum species 1791 85028 1 5 family Tsukamurellaceae 0 2792 4 2787 3 0 Tsukamurella genus 32 1 2060 2061 species Tsukamurella paurometabola 0 1 977 species 57704 1778 1 Tsukamurella tyrosinosolvens 0 1653 1 86 family Corynebacteriaceae 0 52 28508 28422 51 Corynebacterium 0 1 432 genus 1716 species 575200 744 1 Corynebacterium maris 0 1 580 Corynebacterium falsenii 0 species 108486 Corynebacterium mustelae 0 1 310 571915 species species 1050174 317 1 Corynebacterium epidermidicanis 0 1 329 0 Corynebacterium kutscheri species 35755 species 191493 980 1 0 Corynebacterium sphenisci 0 Corynebacterium callunae 1 306 1721 species species 1404244 1 548 0 Corynebacterium glyciniphilum 690 1 Corynebacterium aquilae 0 species 203263 species 258224 1 284 0 Corynebacterium resistens 721 1 0 Corynebacterium doosanense species 1121358 222 1 0 Corynebacterium ammoniagenes species 1697 225326 species 0 Corynebacterium halotolerans 1 926 Corynebacterium testudinoris 0 1 542 136857 species species 156978 494 1 0 Corynebacterium imitans 409 1 Corynebacterium deserti 0 species 1408191 349751 species 0 Corynebacterium marinum 822 1 372 1 Corynebacterium flavescens 0 species 28028 89154 species 0 Corynebacterium terpenotabidum 708 1 43771 species Corynebacterium urealyticum 0 541 1 1719 species 0 Corynebacterium pseudotuberculosis 301 1 2624378 no rank 0 751 2 species 702967 1 458 0 Corynebacterium sp. NML98-0116 1 293 Corynebacterium sp. ATCC 6931 0 species 1487956 1 524 Corynebacterium efficiens 0 species 152794 Corynebacterium glaucum 0 1 499 187491 species 1231000 species Corynebacterium lactis 0 1 326 191610 species 0 Corynebacterium atypicum 1 424 species 161879 234 1 0 Corynebacterium kroppenstedtii species 401472 1 427 Corynebacterium ureicelerivorans 0 1 379 Corynebacterium aurimucosum 0 species 169292 1 285 0 Corynebacterium casei species 160386 43770 species Corynebacterium striatum 0 1 733 1652495 species 0 Corynebacterium crudilactis 341 1 0 [Brevibacterium] flavum 1 408 92706 species species 1717 506 1 Corynebacterium diphtheriae 0 373 1 Corynebacterium argentoratense 0 species 42817 1023 1 Corynebacterium glutamicum 0 species 1718 species 1230998 1 1131 Corynebacterium frankenforstense 0 species 1727 1 930 0 Corynebacterium variabile 35757 species Corynebacterium cystitidis 0 468 1 161899 species 0 Corynebacterium singulare 1 464 1072256 species 0 Corynebacterium uterequi 1 2428 species 1705 360 1 0 Corynebacterium stationis 1223514 species 0 Corynebacterium humireducens 862 1 0 Corynebacterium simulans 1 348 146827 species 0 Corynebacterium jeikeium 690 1 38289 species 1 405 0 Corynebacterium ulcerans species 65058 161895 species Corynebacterium phocae 0 337 1 Corynebacterium camporealensis 0 1 298 161896 species 38305 species Corynebacterium vitaeruminis 0 1 890 0 2 683 316606 family 0 Segniliparus 2 683 286801 genus 5 1 1 678 0 Segniliparus rotundus species 286802 697024 no rank 0 341 1 1 341 0 genus 1847725 species 1528099 341 1 0 Lawsonella clevelandensis 0 Gordoniaceae 9 8593 85026 family 18 1 2053 genus 1 125 Gordonia 0 8 8575 2054 species 0 Gordonia bronchialis 1244 1 0 2 2151 2657482 no rank species 337191 1203 1 0 Gordonia sp. KTR9 species 2059875 1 948 Gordonia sp. YC-JH1 0 1344 1 Gordonia terrae 0 species 2055 1 1356 0 Gordonia polyisoprenivorans species 84595 0 Gordonia iterans 1 1140 1004901 species 0 Gordonia phthalatica 1215 1 1136941 species 1 328 order 85011 219958 82 Streptomycetales 0 81 219630 Streptomycetaceae 0 1 640 family 2062 13567 5 Kitasatospora 0 1 85 genus 2063 2633591 no rank 0 2604 1 2604 1 0 Kitasatospora sp. MMS16-BH015 species 2018025 2066 species Kitasatospora setae 0 3876 1 68173 species Kitasatospora albolonga 0 4589 1 species 1894 2413 1 Kitasatospora aureofaciens 0 0 Streptomyces 75 205423 1883 3746 1 genus 54571 species 0 Streptomyces venezuelae 1 5239 0 24 59416 2593676 no rank Streptomyces sp. CNQ-509 0 2366 1 444103 species 2829 1 Streptomyces sp. Sge12 0 species 1972846 1 2407 0 Streptomyces sp. fd1-xmd species 1812480 Streptomyces sp. P3 0 1 3433 2135430 species 0 Streptomyces sp. CCM_MD2014 2009 1 1561022 species 0 Streptomyces sp. PAMC 26508 1741 1 1265601 species 1 1997 0 Streptomyces sp. Tue 6075 species 1661694 0 Streptomyces sp. 3211 3536 1 1964449 species 0 Streptomyces sp. SirexAA-E 1670 1 862751 species species 1649184 2012 1 Streptomyces sp. CFMR 7 0 1262452 species 0 Streptomyces sp. 769 2544 1 species 1751294 1 1799 0 Streptomyces sp. 4F species 1984801 2435 1 Streptomyces sp. CLI2509 0 2177 1 Streptomyces sp. WAC00288 0 species 2094021 species 206662 3011 1 Streptomyces sp. FR-008 0 species 1849967 1 3508 Streptomyces sp. SAT1 0 0 Streptomyces sp. Mg1 1 2570 465541 species 1495638 species 0 Streptomyces sp. M56 1 3231 1841249 species Streptomyces sp. RTd22 0 2546 1 1837283 species 0 Streptomyces sp. S8 1712 1 species 234612 2075 1 Streptomyces sp. TN58 0 1 2837 0 Streptomyces sp. CdTB01 species 1725411 Streptomyces sp. MOE7 0 1 2110 1961713 species 2861 1 0 Streptomyces sp. CMB-StM0423 species 2059884 285473 species 0 Streptomyces rubrolavendulae 1 2007 2075 1 Streptomyces leeuwenhoekii 0 species 1437453 67267 species Streptomyces alboflavus 0 1 2645 0 Streptomyces cattleya 1 1941 29303 species 0 Streptomyces lividans 2505 1 1916 species 1 2977 0 Streptomyces vietnamensis species 362257 species 38300 1890 1 0 Streptomyces pristinaespiralis Streptomyces parvulus 0 2000 1 146923 species species 1969 1 1793 0 Streptomyces chartreusis Streptomyces sp. S10(2016) 0 2142 1 1783515 species Streptomyces griseochromogenes 0 2314 1 68214 species 193462 species Streptomyces niveus 0 2203 1 species 1971 1 2726 0 Streptomyces noursei 2087 1 Streptomyces collinus 0 species 42684 1983 1 Streptomyces violaceoruber 0 species 1935 7522 2 0 species group 1477431 1902 species Streptomyces coelicolor 0 5490 1 0 Streptomyces sampsonii 1 2032 42239 species 68202 species 0 Streptomyces fulvissimus 1905 1 4947 1 Streptomyces pactum 0 species 68249 Streptomyces violaceusniger 0 1 2540 68280 species 1888 species 0 Streptomyces albus 1 4887 Streptomyces lavendulae 0 2670 1 1914 species 629295 species group 0 2 4155 species subgroup 1482596 1 2122 0 1911 species 0 Streptomyces griseus 1 2122 0 1 2033 1482558 species subgroup 2033 1 Streptomyces globisporus 0 species 1908 species 75293 5592 1 Streptomyces autolyticus 0 species 1930 2990 1 Streptomyces scabiei 0 33903 species Streptomyces avermitilis 0 2773 1 species 408015 1673 1 Streptomyces xiamenensis 0 species 1889 2654 1 0 Streptomyces ambofaciens species 68570 6888 1 Streptomyces albulus 0 0 Streptomyces pluripotens 1 1795 1355015 species 47763 species 0 Streptomyces lydicus 5959 1 164348 species 0 Streptomyces puniciscabiei 2122 1 species 1907 1 2169 0 Streptomyces glaucescens 2049881 species 0 Streptomyces sp. XZHG99 1873 1 1 1782 Streptomyces pratensis 0 species 1169025 2128 1 0 Streptomyces clavuligerus species 1901 92644 species 0 Streptomyces malaysiensis 2727 1 species 1940 1 2121 Streptomyces albireticuli 0 0 Streptomyces lincolnensis 1 3130 1915 species 1 6003 Streptomyces hygroscopicus 0 species 1912 species 1616117 1 3193 0 Streptomyces formicae species 1642299 2884 1 Streptomyces alfalfae 0 species 1926 2472 1 Streptomyces reticuli 0 0 Streptomyces xinghaiensis 2273 1 1038928 species species 1950 1890 1 0 Streptomyces peucetius species 379067 1 3630 0 Streptomyces bingchenggensis 2491 1 0 Streptomyces gilvosporeus species 553510 species 68192 1 1896 Streptomyces cyaneogriseus 0 order 12 1 1643682 5943 8 0 Geodermatophilales 115 1 family 85030 7 5931 0 Geodermatophilaceae 1997 2 Geodermatophilus 0 genus 1 19 1860 1861 species Geodermatophilus obscurus 0 1978 1 Blastococcus 0 1847 2 38501 1 19 genus species 138336 1 1828 0 Blastococcus saxobsidens 88138 genus 1 15 Modestobacter 0 1972 2 477641 species Modestobacter marinus 0 1 1957 52018 no rank 0 1 950 Actinobacteria bacterium IMCC26256 0 1 950 1650658 species Frankiales 0 7 12509 85013 1 107 order 6 12402 Frankiaceae 0 1 104 family 74712 0 Frankia 5 12298 1854 genus 98 1 species 106370 2077 1 0 Frankia casuarinae species 298654 2939 1 0 Frankia inefficax 2632575 no rank 0 2834 1 species 298653 2834 1 Frankia sp. EAN1pec 0 1859 species 0 Frankia alni 4350 1 622452 13 1 order 0 Kineosporiales 4 2214 2201 3 Kineosporiaceae 0 1 33 family 83778 33981 genus 9 1 0 Kineococcus 2168 2 species 131568 1 2159 Kineococcus radiotolerans 0 order 1 31 85004 11496 26 Bifidobacteriales 0 11465 25 Bifidobacteriaceae 0 1 82 family 31953 196081 genus 0 1 297 78259 species 0 Scardovia inopinata 1 297 Bifidobacterium 0 19 9879 1678 1 99 genus 1681 species Bifidobacterium bifidum 0 553 1 1 450 0 Bifidobacterium angulatum species 1683 Bifidobacterium pseudocatenulatum 0 219 1 28026 species 2 691 Bifidobacterium catenulatum 0 species 1 274 1686 0 Bifidobacterium kashiwanohense 417 1 630129 subspecies Bifidobacterium dentium 0 415 1 1689 species 35760 species 0 Bifidobacterium choerinum 902 1 0 Bifidobacterium pseudolongum 1 972 1694 species 28025 species 0 Bifidobacterium animalis 587 1 1691 species 0 Bifidobacterium indicum 1 221 species 1687 1 185 0 Bifidobacterium coryneforme species 1685 797 1 Bifidobacterium breve 0 1684 species 0 Bifidobacterium asteroides 1 362 638619 species 0 Bifidobacterium actinocoloniiforme 1 520 Bifidobacterium longum 0 1426 1 216816 species 1 414 0 Bifidobacterium adolescentis species 1680 696 1 Bifidobacterium scardovii 0 species 158787 species 33905 1 370 0 Bifidobacterium thermophilum 1 1 genus 196082 285 2 0 Parascardovia 78258 species 0 Parascardovia denticolens 284 1 Gardnerella 0 2 922 2701 1 2 genus 1 920 Gardnerella vaginalis 0 species 2702 33 24413 0 Propionibacteriales 111 1 order 85009 148 1 family 31957 11107 19 0 Propionibacteriaceae 1743 1 14 genus Propionibacterium 0 3 1606 1 269 0 no rank 2608905 species 671223 269 1 Propionibacterium sp. oral taxon 193 0 species 1744 1323 1 0 Propionibacterium freudenreichii 1912215 3 1 genus 0 Acidipropionibacterium 2 1356 Acidipropionibacterium acidipropionici 0 1 1353 1748 species 0 222 1 203133 genus no rank 2633994 222 1 0 1871034 species 0 Propionimicrobium sp. Marseille-P3275 1 222 0 1 661 2801844 genus 0 Pseudopropionibacterium propionicum 661 1 1750 species 29404 genus 1 6 Microlunatus 0 1159 2 1153 1 0 Microlunatus phosphovorus species 29405 4045 5 Tessaracoccus 0 1 50 genus 72763 0 Tessaracoccus flavus 1 803 1610493 species 399497 species Tessaracoccus flavescens 0 1 976 1 1086 Tessaracoccus aquimaris 0 species 1332264 2635419 no rank 0 1130 1 Tessaracoccus sp. T2.5-30 0 1130 1 1909732 species 4 1910 Cutibacterium 0 1 17 genus 1912216 species 1747 1 856 0 Cutibacterium acnes 33010 species Cutibacterium avidum 0 636 1 33011 species Cutibacterium granulosum 0 401 1 13 13195 Nocardioidaceae 0 1 155 family 85015 genus 1 138 1839 5662 4 Nocardioides 0 2615069 no rank 0 1 2006 196162 species Nocardioides sp. JS614 0 2006 1 species 450734 2235 1 Nocardioides dokdonensis 0 1283 1 Nocardioides sp. 78 0 species 2045452 116071 17 1 genus 0 Micropruina 1023 2 75385 species Micropruina glycogenica 0 1 1006 1754 2 Aeromicrobium 0 genus 1 20 2040 1734 1 0 Aeromicrobium erythreum species 2041 Kribbella 0 1888 2 182639 1 47 genus 182640 species Kribbella flavida 0 1 1841 0 Pimelobacter 2 2713 2044 genus 32 1 0 Pimelobacter simplex 1 2681 2045 species no rank 1752188 1738 4 0 1848756 species 0 Actinobacteria bacterium IMCC26103 1 473 species 1848754 522 1 Actinobacteria bacterium IMCC19121 0 0 Actinobacteria bacterium IMCC25003 343 1 1848255 species species 1848755 1 400 Actinobacteria bacterium IMCC26077 0 84992 6 1 class 0 Acidimicrobiia 5550 7 84993 order 1 54 Acidimicrobiales 0 6 5544 0 Acidimicrobiaceae 3 1247 84994 family 14 1 Acidimicrobium 0 2 1233 53634 1 34 genus 1 1199 Acidimicrobium ferrooxidans 0 species 53635 0 4243 2 2448023 family Ilumatobacter 0 2 4243 682522 1 33 genus 1 4210 Ilumatobacter coccineus 0 species 467094 84998 class 1 40 Coriobacteriia 0 9663 33 0 Coriobacteriales 3737 14 84999 22 1 order 1643824 1 9 family Atopobiaceae 0 2442 7 genus 1380 1 5 0 Atopobium 2767353 genus 0 1 364 species 1382 1 364 Atopobium parvulum 0 133925 genus 1 26 Olsenella 0 4 2064 530 1 Olsenella uli 0 species 133926 1 888 0 Olsenella sp. Marseille-P2300 species 1805478 0 620 1 2638792 no rank Olsenella sp. oral taxon 807 0 620 1 712411 species 11 1 family 84107 1273 6 0 Coriobacteriaceae Coriobacterium 0 363 2 33870 genus 1 11 33871 species Coriobacterium glomerans 0 352 1 84113 no rank 0 484 1 species 1531429 1 484 Coriobacteriaceae bacterium 68-1-3 0 Collinsella 0 2 415 102106 genus 1 13 74426 species 0 Collinsella aerofaciens 402 1 1643822 order 51 1 0 Eggerthellales 5886 18 1643826 77 1 family 0 Eggerthellaceae 17 5835 4 1 genus 84162 2 259 0 Cryptobacterium 84163 species Cryptobacterium curtum 0 1 255 515 2 Slackia 0 1 12 genus 84108 species 84110 503 1 0 Slackia heliotrinireducens 84111 17 1 genus 0 Eggerthella 1468 3 species 84112 1 1043 0 Eggerthella lenta 2648737 no rank 0 1 408 502558 species 0 Eggerthella sp. YY7918 408 1 genus 1 1 79603 2 415 0 Denitrobacterium 1 414 Denitrobacterium detoxificans 0 species 79604 644652 genus 1 30 Gordonibacter 0 3 1935 919 1 0 Gordonibacter massiliensis species 1841863 1335613 species Gordonibacter urolithinfaciens 0 1 986 640 2 Adlercreutzia 0 genus 1 3 447020 species 446660 637 1 Adlercreutzia equolifaciens 0 1981050 3 1 genus 0 Phoenicibacter 526 2 0 Phoenicibacter massiliensis 523 1 1944646 species 1497346 class 1 1 0 Thermoleophilia 5657 5 5656 4 Solirubrobacterales 0 order 1 41 588673 25 1 family 320583 5615 3 0 Conexibacteraceae 0 Conexibacter 2 5590 191494 genus 20 1 species 191495 1 5570 Conexibacter woesei 0 84995 11 1 class 0 Rubrobacteria 1994 6 order 1 36 84996 5 1983 Rubrobacterales 0 84997 12 1 family 0 Rubrobacteraceae 1947 4 1 32 genus 42255 3 1935 Rubrobacter 0 0 Rubrobacter xylanophilus 1 1037 49319 species 42256 species Rubrobacter radiotolerans 0 1 866 0 5 962 67819 phylum 5 962 Fimbriimonadia 0 1 21 class 1663419 1 5 order 1663425 4 941 Fimbriimonadales 0 1 1 family 1663426 936 3 Fimbriimonadaceae 0 2 935 0 Fimbriimonas genus 6 1 1005038 species 1005039 1 929 0 Fimbriimonas ginsengisoli 0 Tenericutes 102 71436 544448 7 1 phylum 31969 class 219 1 0 Mollicutes 97 67978 186329 order 26 1 0 Acholeplasmatales 6923 13 family 1 38 2146 12 6897 Acholeplasmataceae 0 5 3906 0 Acholeplasma 36 1 genus 2147 0 Acholeplasma oculi 1034 1 35623 species 679 1 0 Acholeplasma brassicae species 61635 Acholeplasma palmae 0 1315 1 38986 species species 2148 1 842 0 Acholeplasma laidlawii genus 1 48 33926 6 2953 Candidatus Phytoplasma 0 85630 species group 0 639 1 37692 species 0 Candidatus Phytoplasma mali 1 639 species group 85632 1 584 0 Candidatus Phytoplasma australiense 0 584 1 59748 species species group 85620 3 1682 0 229545 species Aster yellows witches'-broom phytoplasma 0 533 1 202462 species Maize bushy stunt phytoplasma 0 550 1 100379 species Onion yellows phytoplasma 0 599 1 2085 order 130 1 0 Mycoplasmatales 31253 44 2092 family 75 1 0 Mycoplasmataceae 43 31123 2093 genus 1 262 Mycoplasma 0 27 20507 1 1034 Mycoplasma hyopneumoniae 0 species 2099 species 2123 1 764 0 Mycoplasma putrefaciens 0 3 4631 656088 species group 2105 species 0 Mycoplasma leachii 1162 1 species 2095 1 1297 0 Mycoplasma capricolum 2102 species Mycoplasma mycoides 0 1 2172 0 Mycoplasma genitalium 401 1 2097 species 1 197 Mycoplasma pneumoniae 0 species 2104 Mycoplasma arthritidis 0 405 1 2111 species 1 1202 Mycoplasma haemofelis 0 species 29501 species 86660 548 1 Mycoplasma dispar 0 Mycoplasma suis 0 1 429 57372 species 1 1066 Mycoplasma penetrans 0 species 28227 species 2100 1 839 0 Mycoplasma hyorhinis Mycoplasma parvum 0 559 1 984991 species 29554 species Mycoplasma canadense 0 1 742 2098 species Mycoplasma hominis 0 1 1157 Mycoplasma gallisepticum 0 1 652 2096 species 171632 species Mycoplasma ovis 0 254 1 0 Mycoplasma mobile 935 1 2118 species Mycoplasma flocculare 0 436 1 2128 species 0 1 604 2683645 no rank species 1749074 604 1 Mycoplasma sp. (ex Biomphalaria glabrata) 0 0 Mycoplasma wenyonii 1 209 65123 species 1 1090 Mycoplasma yeatsii 0 species 51365 0 Mycoplasma bovoculi 1 839 45362 species 50052 species Mycoplasma crocodyli 0 744 1 0 Mycoplasma haemocanis 508 1 136241 species 3 1433 Ureaplasma 0 1 2 genus 2129 species 2130 653 1 0 Ureaplasma urealyticum 0 Ureaplasma parvum 1 778 134821 species 2767358 genus 0 12 9108 Mycoplasma bovirhinis 0 618 1 29553 species 2112 species Mycoplasma bovigenitalium 0 561 1 0 Mycoplasma bovis 1521 1 28903 species 0 Mycoplasma arginini 1 690 2094 species 0 Mycoplasma pullorum 569 1 48003 species 2113 species Mycoplasma californicum 0 416 1 1 803 0 Mycoplasma cynos species 171284 1 865 0 Mycoplasma canis species 29555 2109 species Mycoplasma synoviae 0 1 569 862 1 Mycoplasma agalactiae 0 species 2110 species 2107 841 1 0 Mycoplasma pulmonis Mycoplasma fermentans 0 1 793 2115 species order 1 54 186328 39 29583 Entomoplasmatales 0 0 Entomoplasmataceae 14 8887 33925 22 1 family 46238 genus 1 10 Entomoplasma 0 5 2671 214888 species Entomoplasma luminosum 0 670 1 215578 species Entomoplasma somnilux 0 828 1 species 81459 852 1 Entomoplasma melaleucae 0 311 1 Entomoplasma freundtii 0 species 74700 genus 1 147 46239 6194 8 Mesoplasma 0 795 1 Mesoplasma tabanidae 0 species 219745 779 1 0 Mesoplasma syrphidae species 225999 0 Mesoplasma florum 1606 1 2151 species 1 780 0 Mesoplasma entomophilum species 2149 0 Mesoplasma lactucae 539 1 138853 species 216427 species 0 Mesoplasma chauliocola 1 778 324078 species 0 Mesoplasma coleopterae 1 770 1 43 family 2131 20642 24 Spiroplasmataceae 0 23 20599 Spiroplasma 0 1 239 genus 2132 1114980 species Spiroplasma atrichopogonis 0 1 609 216934 species 0 Spiroplasma corruscae 1 1029 Spiroplasma monobiae 0 1 892 2136 species 1130 1 Spiroplasma diminutum 0 species 216936 919 1 0 Spiroplasma kunkelii species 47834 1 1036 0 Spiroplasma clarkii species 2139 2133 species Spiroplasma citri 0 1 833 1526 2 0 no rank 2637901 1898044 species Spiroplasma sp. TU-14 0 1 763 Spiroplasma sp. NBRC 100390 0 763 1 1914410 species Spiroplasma eriocheiris 0 1 679 315358 species Spiroplasma helicoides 0 1 909 216938 species 1 1207 0 Spiroplasma cantharicola species 362837 216945 species Spiroplasma syrphidicola 0 726 1 216946 species Spiroplasma turonicum 0 1106 1 Spiroplasma taiwanense 0 1261 1 2145 species 667 1 Spiroplasma apis 0 species 2137 0 Spiroplasma floricola 1 1277 216937 species Spiroplasma sabaudiense 0 1 695 216944 species species 216942 1362 1 0 Spiroplasma litorale species 216935 1 1211 0 Spiroplasma culicicola 2144 species 0 Spiroplasma mirum 1 597 1 689 0 Spiroplasma chrysopicola species 216933 2 1102 0 no rank 2799557 1102 2 0 Candidatus Izimaplasma 2 1 genus 1912503 1100 1 0 no rank 2624196 0 Candidatus Izimaplasma sp. HR1 1 1100 1541959 species 0 2 2349 713063 no rank 1911684 species Tenericutes bacterium MO-XQ 0 1 1207 0 Tenericutes bacterium MZ-XQ 1142 1 1911683 species 0 157 6133887 1798711 clade 1117 1 50 phylum Cyanobacteria 0 6133887 157 1 16 class 307596 2196 6 Gloeobacteria 0 0 Gloeobacterales 5 2180 307595 15 1 order family 13 1 1890422 4 2165 0 Gloeobacteraceae 33071 genus 1 10 Gloeobacter 0 2152 3 1416614 species Gloeobacter kilaueensis 0 1 1043 Gloeobacter violaceus 0 1 1099 33072 species order 1 173 1161 33 51191 Nostocales 0 2 2580 0 family 1892263 0 Fischerella 2 2580 1190 8 1 genus 0 1 2572 494603 no rank 2572 1 Fischerella sp. NIES-3754 0 species 1752063 family 97 1 1162 18 28486 0 Nostocaceae 0 Nostoc 10 18107 1177 genus 154 1 1 1864 Nostoc punctiforme 0 species 272131 1 2242 0 Nostoc flagelliforme species 1306274 0 13847 7 2593658 no rank 1261031 species 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 1900 1759 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 species 1618022 1 1992 Nostoc sp. NIES-3756 0 species 1751286 species 1869241 1 2039 Nostoc sp. CENA543 0 1 1694 0 Nostoc sp. PCC 7120 species 103690 0 Nostoc sp. PCC 7107 1 2170 317936 species species 28072 1 2293 Nostoc sp. PCC 7524 0 6715 4 Anabaena 0 1 51 genus 1163 4427 2 0 no rank 2619674 1 2260 0 Anabaena sp. WA102 species 1647413 2167 1 0 Anabaena sp. 90 species 46234 species 1165 1 2237 Anabaena cylindrica 0 16 1 genus 264688 3567 3 0 Trichormus 1785 1 0 Trichormus azollae species 1164 264691 species 0 Trichormus variabilis 1 1766 1185 family 1 45 Rivulariaceae 0 3852 3 373984 genus 9 1 0 Rivularia 2 3807 0 1 3798 2676603 no rank 373994 species Rivularia sp. PCC 7116 0 1 3798 1 1467 0 no rank 1219117 Nostocales cyanobacterium HT-58-2 0 1 1467 1940762 species 0 8 14633 2661849 family 8 14633 0 Calothrix 134 1 genus 1186 0 6 12564 2619626 no rank 1779 1 Calothrix sp. PCC 7507 0 species 99598 0 Calothrix sp. NIES-4071 2974 1 2005469 species 1 1523 Calothrix sp. NIES-3974 0 species 2005462 1954171 species Calothrix sp. NIES-2098 0 2382 1 species 2005461 2284 1 Calothrix sp. NIES-4101 0 1 1622 Calothrix sp. 336/3 0 species 1337936 32054 species 0 Calothrix parietina 1 1935 0 1 1186 1983111 no rank 1186 1 cyanobacterium endosymbiont of Epithemia turgida 0 species 718217 1890505 11 1 order 0 Chroococcidiopsidales 4 2477 1 28 family 1890528 2466 3 Chroococcidiopsidaceae 0 54298 genus 1 8 Chroococcidiopsis 0 2438 2 species 54299 1 2430 0 Chroococcidiopsis thermalis 1890424 order 334 1 0 Synechococcales 5864170 57 5 5517115 0 Prochloraceae 21 1 family 1213 Prochlorococcus 0 4 5517094 1218 1 241 genus 2627481 no rank 0 2 1310079 Prochlorococcus sp. MIT 0801 0 30848 1 1501269 species Prochlorococcus sp. MIT 0604 0 1279231 1 1501268 species species 1219 1 4206774 0 Prochlorococcus marinus Merismopediaceae 0 5 2468 1890428 1 1 family 1142 genus 73 1 0 Synechocystis 4 2467 0 3 2394 2640012 no rank 2116702 species 0 Synechocystis sp. IPPAS B-1465 1 744 1147 species Synechocystis sp. PCC 6714 0 906 1 species 1148 744 1 0 Synechocystis sp. PCC 6803 1890436 13 1 family 0 Pseudanabaenaceae 1819 2 1152 genus 0 1 1806 no rank 2593292 1 1806 0 1806 1 Pseudanabaena sp. PCC 7367 0 species 82654 0 Synechococcaceae 335917 33 1890426 family 91 1 Dactylococcopsis 0 1412 2 13034 1 3 genus Dactylococcopsis salina 0 1409 1 292566 species 327377 26 0 Synechococcus 1415 1 genus 1129 species 33070 395 1 Synechococcus lividus 0 0 324936 23 2626047 no rank 195248 species 0 Synechococcus sp. PCC 8807 1 505 1173263 species Synechococcus sp. PCC 7502 0 1 1184 species 321332 718 1 Synechococcus sp. JA-2-3B'a(2-13) 0 1 102488 0 Synechococcus sp. WH 8109 species 166314 species 29410 25387 1 Synechococcus sp. WH 8103 0 0 Synechococcus sp. PCC 7003 1 555 374981 species species 1350461 591 1 Synechococcus sp. UTEX 2973 0 374982 species 0 Synechococcus sp. PCC 73109 510 1 3319 1 Synechococcus sp. WH 7803 0 species 32051 1 515 Synechococcus sp. JA-3-3Ab 0 species 321327 25297 1 0 Synechococcus sp. WH 8102 species 84588 1 2284 0 Synechococcus sp. CC9311 species 64471 97230 1 0 Synechococcus sp. CC9605 species 110662 species 316278 1 5645 Synechococcus sp. RCC307 0 0 Synechococcus sp. KORDI-52 1 31456 585425 species 195253 species Synechococcus sp. PCC 6312 0 575 1 1 9711 0 Synechococcus sp. KORDI-49 species 585423 Synechococcus sp. SynAce01 0 1 2134 1916956 species 0 Synechococcus sp. KORDI-100 11247 1 1280380 species Synechococcus sp. PCC 7117 0 1 541 195498 species 316279 species 0 Synechococcus sp. CC9902 1 1968 Synechococcus sp. NIES-970 0 578 1 1827144 species 32049 species 0 Synechococcus sp. PCC 7002 498 1 631 1 Synechococcus elongatus 0 species 32046 0 1 527 146785 genus species 146786 527 1 0 Thermosynechococcus elongatus genus 1 57 167375 3 6510 Cyanobium 0 no rank 2627006 3332 1 0 1851505 species 0 Cyanobium sp. NIES-981 3332 1 species 59930 1 3121 Cyanobium gracile 0 1890438 family 32 1 0 Leptolyngbyaceae 6 3919 3887 5 0 Leptolyngbya 34 1 genus 47251 3 2993 0 no rank 2650499 1 1344 Leptolyngbya sp. PCC 7376 0 species 111781 1752064 species 0 Leptolyngbya sp. NIES-3755 737 1 species 1080068 1 912 Leptolyngbya sp. O-77 0 species 1184 1 860 Leptolyngbya boryana 0 family 2303730 2 1220 0 Halomicronema 0 2 1220 170610 genus 1 8 1212 1 0 Halomicronema hongdechloris species 1209493 family 1 7 1890429 1378 3 Acaryochloridaceae 0 155977 genus 1 15 Acaryochloris 0 1371 2 155978 species 0 Acaryochloris marina 1356 1 52604 1 11 order Pleurocapsales 0 8 7374 1 27 family 1890498 4 6061 Dermocarpellaceae 0 102115 genus 1 54 Stanieria 0 6034 3 no rank 2642663 3320 1 0 0 Stanieria sp. NIES-3757 3320 1 1807358 species 102116 species Stanieria cyanosphaera 0 2660 1 1890500 36 1 family 0 Hyellaceae 3 1302 0 Pleurocapsa 2 1266 44474 4 1 genus 0 Pleurocapsa minor 1262 1 54308 species 0 205243 47 1301283 subclass Oscillatoriales 0 21 169613 1150 order 1 165 0 Gomontiellaceae 1788 3 1892255 family 8 1 1 5 genus 241421 1780 2 Crinalium 0 Crinalium epipsammum 0 1775 1 241425 species 3 747 Cyanothecaceae 0 1 49 family 1892249 43988 1 88 genus Cyanothece 0 698 2 1 610 0 no rank 2649277 395961 species 0 Cyanothece sp. PCC 7425 610 1 1892254 family 1 58 Oscillatoriaceae 0 6 12319 7954 2 0 Moorea genus 28 1 1155738 1155739 species 0 Moorea producens 1 7926 genus 40 1 1158 4307 3 0 Oscillatoria 482564 species 0 Oscillatoria nigro-viridis 1933 1 118323 species 0 Oscillatoria acuminata 1 2334 5 153769 Microcoleaceae 0 family 1 43 1892252 44471 1 7 genus Microcoleus 0 2 1217 no rank 2642155 1210 1 0 1210 1 Microcoleus sp. PCC 7113 0 species 1173027 Trichodesmium 0 2 152509 1205 genus 1 9 1 152500 Trichodesmium erythraeum 0 species 1206 825 3 0 Coleofasciculaceae family 32 1 1892251 1 7 genus 63132 2 793 Geitlerinema 0 2648775 no rank 0 1 786 786 1 Geitlerinema sp. PCC 7407 0 species 1173025 1118 order 1 73 Chroococcales 0 35630 26 8 11851 Chroococcaceae 0 family 1 92 1890464 1 5 genus 268175 2 3778 Chondrocystis 0 1 3773 0 no rank 2648896 1 3773 Chondrocystis sp. NIES-4102 0 species 2005460 0 Gloeocapsa 2 1545 102231 genus 4 1 no rank 2623012 1 1541 0 species 1173026 1541 1 0 Gloeocapsa sp. PCC 7428 Geminocystis 0 3 6436 669357 1 22 genus 2625037 no rank 0 6414 2 1615909 species Geminocystis sp. NIES-3708 0 1 4099 2315 1 0 Geminocystis sp. NIES-3709 species 1617448 22 1 family 1890452 3 2461 0 Cyanobacteriaceae 0 Cyanobacterium 2 2439 102234 genus 1 1 species 379064 2438 1 Cyanobacterium aponinum 0 4 5663 0 Microcystaceae family 36 1 1890449 Microcystis 0 3 5627 1125 1 33 genus Microcystis aeruginosa 0 3967 1 1126 species 2643300 no rank 0 1 1627 species 1967666 1 1627 Microcystis sp. MC19 0 1890450 family 19 1 0 Aphanothecaceae 10 15582 genus 2546365 2 2686 0 2546366 species 0 2686 2 1 1366 Cyanothece sp. PCC 8801 0 strain 41431 Cyanothece sp. PCC 8802 0 1320 1 395962 strain 3726 2 0 genus 28070 species 2546356 1 1760 0 1760 1 0 Cyanothece sp. PCC 7424 strain 65393 1 1966 0 species 2546359 0 Cyanothece sp. PCC 7822 1966 1 497965 strain 5 1 genus 1453359 6381 2 0 Candidatus Atelocyanobacterium 1 6376 0 Candidatus Atelocyanobacterium thalassa species 713887 1 1685 0 genus 263510 0 1 1685 2546360 species 0 Cyanothece sp. ATCC 51142 1 1685 43989 strain 2 1085 0 no rank 92682 6 1 genus 76023 1085 2 0 Halothece 0 1079 1 2632878 no rank 0 Halothece sp. PCC 7418 1 1079 65093 species 712 581731 Firmicutes 0 1 176 phylum 1239 2816 10 Erysipelotrichia 0 class 1 6 526524 order 16 1 526525 2810 9 0 Erysipelotrichales 8 2794 0 Erysipelotrichaceae family 12 1 128827 321 1 0 genus 1729679 1702221 species Faecalibaculum rodentium 0 321 1 1 1 genus 191303 2 833 0 Turicibacter 1 832 0 no rank 2638206 832 1 0 Turicibacter sp. H121 species 1712675 1647 13 1 genus 0 Erysipelothrix 3 1211 1514105 species Erysipelothrix larvae 0 581 1 0 Erysipelothrix rhusiopathiae 1 617 1648 species 417 1 0 no rank 544447 species 1834207 1 417 0 Erysipelotrichaceae bacterium I46 186801 1 228 class Clostridia 0 210423 214 1 547 order 186802 174877 157 Clostridiales 0 no rank 538999 10 2965 0 2 604 Intestinimonas 0 1 5 genus 1392389 Intestinimonas butyriciproducens 0 1 599 1297617 species 964 3 Clostridiales Family XVII. Incertae Sedis 0 1 14 family 539000 0 Thermaerobacter 950 2 73918 genus 8 1 Thermaerobacter marianensis 0 942 1 73919 species genus 2717089 435 1 0 2086584 species Mordavella sp. Marseille-P3756 0 435 1 543314 family 1 3 Clostridiales Family XIII. Incertae Sedis 0 962 4 species 143393 456 1 [Eubacterium] sulci 0 Mogibacterium 0 503 2 86331 1 3 genus species 114527 500 1 0 Mogibacterium diversum 2304686 family 0 6817 12 0 Ruminiclostridium 2 998 1508657 29 1 genus 969 1 0 [Clostridium] cellulolyticum species 1521 0 418 1 2305130 no rank 0 Ruminiclostridium sp. KB18 418 1 1834198 species 236752 genus 5 1 0 Fastidiosipila 784 2 779 1 Fastidiosipila sanguinis 0 species 236753 2304693 genus 0 698 1 species 84032 698 1 [Clostridium] thermosuccinogenes 0 0 Mageeibacillus 318 2 1637257 genus 1 1 884684 species Mageeibacillus indolicus 0 317 1 genus 2304691 1 449 0 1510 species [Clostridium] stercorarium 0 449 1 0 3 3152 2304692 genus 288965 species [Clostridium] clariflavum 0 1221 1 1677857 species Herbivorax saccincola 0 1174 1 0 Ruminiclostridium thermocellum 1 757 1515 species 1013 5 Syntrophomonadaceae 0 1 10 family 68298 4 1 genus 129001 364 2 0 Syntrophothermus 86170 species 0 Syntrophothermus lipocalidus 1 360 1 1 genus 862 2 639 Syntrophomonas 0 species 863 1 638 0 Syntrophomonas wolfei family 9 1 186806 2331 5 0 Eubacteriaceae 0 Acetobacterium 2 866 33951 genus 6 1 species 33952 1 860 0 Acetobacterium woodii 1456 2 Eubacterium 0 genus 1 9 1730 1736 species 0 Eubacterium limosum 1447 1 2 1 family 216572 534 3 0 Oscillospiraceae 2 532 Oscillibacter 0 genus 1 5 459786 Oscillibacter valericigenes 0 527 1 351091 species 990719 1 1 family Christensenellaceae 0 3 331 330 2 0 Christensenella genus 2 1 990721 1805714 species Christensenella massiliensis 0 1 328 3551 11 Ruminococcaceae 0 1 46 family 541000 0 1 372 552397 no rank 1 372 0 [Clostridium] cellulosi species 29343 3 1 genus 216851 660 2 0 Faecalibacterium 853 species 0 Faecalibacterium prausnitzii 1 657 genus 253238 564 1 0 1 564 Ethanoligenens harbinense 0 species 253239 1 21 genus 946234 784 2 Flavonifractor 0 0 Flavonifractor plautii 1 763 292800 species Ruminococcus 0 3 902 1263 1 1 genus Ruminococcus albus 0 449 1 1264 species 1160721 species Ruminococcus bicirculans 0 452 1 no rank 2305133 223 1 0 223 1 Ruminococcaceae bacterium CPB6 0 species 1572656 31979 family 1 143 Clostridiaceae 0 40 115655 1210 1 0 genus 390805 1210 1 0 Geosporobacter ferrireducens species 1424294 49082 1 60 genus Candidatus Arthromitus 0 4 4288 2638829 no rank 0 4228 3 0 Candidatus Arthromitus sp. SFB-rat-Yit 1 1481 1041504 species 1 1376 0 Candidatus Arthromitus sp. SFB-mouse-NL species 1508644 0 Candidatus Arthromitus sp. SFB-mouse 1 1371 49118 species 114627 genus 1 4 Alkaliphilus 0 2543 3 Alkaliphilus metalliredigens 0 1536 1 208226 species 461876 species Alkaliphilus oremlandii 0 1003 1 genus 493 1 1485 30 107469 0 Clostridium 84023 species 0 Clostridium autoethanogenum 1 2000 2660 1 0 Clostridium taeniosporum species 394958 1561 species Clostridium baratii 0 1 4353 Clostridium scatologenes 0 3291 1 1548 species species 169679 1 4218 Clostridium saccharobutylicum 0 36745 species Clostridium saccharoperbutylacetonicum 0 4471 1 0 Clostridium novyi 1 2139 1542 species 4877 1 Clostridium pasteurianum 0 species 1501 species 1493 1 2445 Clostridium cellulovorans 0 0 Clostridium bornimense 2908 1 1216932 species 1534 species Clostridium kluyveri 0 2921 1 Clostridium tyrobutyricum 0 1857 1 1519 species 1502 species Clostridium perfringens 0 4928 1 1520 species 0 Clostridium beijerinckii 1 5599 species 1497 1 1712 0 Clostridium formicaceticum species 46867 1 2401 0 Clostridium chauvoei species 1538 2109 1 0 Clostridium ljungdahlii 1685 1 Clostridium aceticum 0 species 84022 species 238834 1 2570 0 Clostridium estertheticum 1492 species Clostridium butyricum 0 4163 1 2916 1 0 Clostridium tetani species 1513 species 1491 26268 1 0 Clostridium botulinum species 1494 1 2248 Clostridium cochlearium 0 0 Clostridium acetobutylicum 1 2310 1488 species Clostridium sporogenes 0 1 2622 1509 species species 217159 1 3380 0 Clostridium carboxidivorans 29341 species 0 Clostridium argentinense 1 2726 0 1199 2 2614128 no rank 919 1 Clostridium sp. BNL1100 0 species 755731 species 1042156 280 1 Clostridium sp. SY8519 0 1981033 genus Mordavella 0 2 1 186807 38 1 family 0 Peptococcaceae 27 12267 2282740 genus 0 773 1 1 773 Desulfotomaculum gibsoniae 0 species 102134 Desulfosporosinus 0 2388 4 79206 genus 1 4 0 Desulfosporosinus meridiei 1 724 79209 species 0 Desulfosporosinus orientis 1 895 1563 species species 885581 1 765 0 Desulfosporosinus acidiphilus 0 1 692 2282742 genus 58138 species 0 Desulfotomaculum acetoxidans 692 1 1 767 0 genus 51514 species 51515 767 1 0 Dehalobacterium formicoaceticum 2468 5 Desulfotomaculum 0 1 31 genus 1562 0 Desulfotomaculum nigrificans 1 515 1565 species species 59610 796 1 0 Desulfotomaculum reducens 1833852 species 0 Desulfotomaculum ferrireducens 1 551 Desulfotomaculum ruminis 0 575 1 1564 species 51196 genus 0 442 1 Syntrophobotulus glycolicus 0 442 1 51197 species 0 Candidatus Desulforudis 512 2 471826 genus 5 1 species 471827 507 1 Candidatus Desulforudis audaxviator 0 1 27 genus 36853 2476 5 Desulfitobacterium 0 49338 species 0 Desulfitobacterium hafniense 1 778 0 Desulfitobacterium dehalogenans 1 566 36854 species species 142877 1 505 Desulfitobacterium metallireducens 0 0 Desulfitobacterium dichloroeliminans 600 1 233055 species 2 468 Thermincola 0 genus 1 1 278993 0 Thermincola potens 467 1 863643 species 1243 4 0 Dehalobacter 35 1 genus 56112 Dehalobacter restrictus 0 1 396 55583 species 812 2 0 no rank 2635733 0 Dehalobacter sp. CF 399 1 1131462 species Dehalobacter sp. DCA 0 413 1 1147129 species 1 23 family 186803 22 15346 Lachnospiraceae 0 genus 1663717 722 1 0 722 1 Herbinix luporum 0 species 1679721 0 Lachnoclostridium 4 2313 1506553 genus 20 1 1871021 species Lachnoclostridium phocaeense 0 406 1 0 Lachnoclostridium phytofermentans 1285 1 66219 species no rank 2608895 1 602 0 species 1834196 602 1 Lachnoclostridium sp. YL32 0 genus 2719231 1 509 0 1 509 0 [Clostridium] saccharolyticum species 84030 1278 3 Blautia 0 1 4 genus 572511 no rank 2648079 1 529 0 1796616 species 0 Blautia sp. YL58 529 1 1322 species Blautia hansenii 0 1 745 genus 2569097 1479 1 0 species 39488 1 1479 [Eubacterium] hallii 0 2039240 genus 0 1 756 species 28446 756 1 Anaerotignum propionicum 0 Cellulosilyticum 0 2382 2 698776 1 2 genus 29360 species Cellulosilyticum lentocellum 0 1 2380 genus 207244 1 813 0 species 649756 1 813 Anaerostipes hadrus 0 0 2 1860 830 genus 43305 species 0 Butyrivibrio proteoclasticus 1 969 1 891 Butyrivibrio hungatei 0 species 185008 genus 841 1 423 0 423 1 0 Roseburia hominis species 301301 0 1102 1 28050 genus 1102 1 0 [Eubacterium] eligens species 39485 2719313 genus 0 695 1 species 208479 1 695 [Clostridium] bolteae 0 no rank 186928 2 991 0 species 39491 530 1 [Eubacterium] rectale 0 1 461 Lachnospiraceae bacterium oral taxon 500 0 species 712991 543349 family 1 4 Symbiobacteriaceae 0 1109 3 genus 6 1 2733 2 1105 0 Symbiobacterium 1099 1 0 Symbiobacterium thermophilum species 2734 0 Heliobacteriaceae 3 668 31984 family 3 1 2697 6 1 genus 0 Heliobacterium 665 2 Heliobacterium modesticaldum 0 1 659 35701 species family 1 24 186804 11743 12 Peptostreptococcaceae 0 1411023 no rank 0 1 852 852 1 Peptostreptococcaceae bacterium oral taxon 929 0 species 2081703 1 1 genus 186831 1540 2 0 Acetoanaerobium 1511 species 0 Acetoanaerobium sticklandii 1539 1 44259 genus 1 7 Filifactor 0 2 735 species 143361 1 728 0 Filifactor alocis 2 451 0 Peptoclostridium 1 1 genus 1481960 species 1731 450 1 0 Peptoclostridium acidaminophilum 3 1 genus 1849828 2738 2 0 Paeniclostridium species 1505 2735 1 Paeniclostridium sordellii 0 2 5403 Clostridioides 0 genus 1 3 1870884 1496 species 0 Clostridioides difficile 1 5400 order 2770089 1154 3 0 2770093 family 0 338 2 0 Thermosediminibacter 338 2 291988 genus 2 1 Thermosediminibacter oceani 0 336 1 291990 species 816 1 0 family 2770092 genus 499228 1 816 0 499229 species Tepidanaerobacter acetatoxydans 0 816 1 68295 44 1 order 0 Thermoanaerobacterales 37 24744 543372 family 0 360 1 genus 252965 360 1 0 1 360 0 Mahella australiensis species 252966 Thermoanaerobacteraceae 0 19 12223 186814 1 39 family genus 1 1 249529 914 2 0 Caldanaerobacter 911092 species Caldanaerobacter subterraneus 0 913 1 0 Thermacetogenium 2 509 140458 genus 2 1 1 507 0 Thermacetogenium phaeum species 85874 129957 genus 0 1 646 species 129958 646 1 0 Carboxydothermus hydrogenoformans 1754 375 1 genus 0 Thermoanaerobacter 9 9238 Thermoanaerobacter italicus 0 1 1097 108150 species 1 1060 0 Thermoanaerobacter kivui species 2325 29323 species Thermoanaerobacter brockii 0 1025 1 2 2371 0 no rank 2636821 399726 species Thermoanaerobacter sp. X514 0 1143 1 573062 species Thermoanaerobacter sp. X513 0 1 1228 1070 1 Thermoanaerobacter mathranii 0 species 583357 496866 species 0 Thermoanaerobacter pseudethanolicus 1 1025 Thermoanaerobacter wiegelii 0 1 1215 46354 species 0 877 4 42857 no rank genus 1 11 44260 421 2 Moorella 0 0 Moorella thermoacetica 410 1 1525 species 456 2 Ammonifex 0 1 1 genus 42837 species 42838 1 455 0 Ammonifex degensii 3 1388 0 Thermodesulfobiaceae 3 1 family 227387 227388 5 1 genus 0 Thermodesulfobium 1385 2 1380 1 0 Thermodesulfobium narugense species 184064 family 1 22 543371 10729 13 Thermoanaerobacterales Family III. Incertae Sedis 0 16 1 genus 28895 2873 3 0 Thermoanaerobacterium 0 Thermoanaerobacterium xylanolyticum 1 967 29329 species species 1517 1890 1 0 Thermoanaerobacterium thermosaccharolyticum 9 7834 Caldicellulosiruptor 0 1 92 genus 44000 55205 species Caldicellulosiruptor owensensis 0 949 1 1 814 Caldicellulosiruptor kristjanssonii 0 species 52765 species 413888 1 919 Caldicellulosiruptor hydrothermalis 0 1 844 Caldicellulosiruptor lactoaceticus 0 species 52766 955 1 0 Caldicellulosiruptor bescii species 31899 44001 species 0 Caldicellulosiruptor saccharolyticus 1204 1 413889 species 0 Caldicellulosiruptor kronotskyensis 1 1064 species 717609 993 1 0 Caldicellulosiruptor obsidiansis 12 8278 0 Halanaerobiales 25 1 order 53433 Halobacteroidaceae 0 2739 5 53434 1 8 family 28186 genus 1 1 Acetohalobium 0 1008 2 28187 species 0 Acetohalobium arabaticum 1 1007 0 Halobacteroides 2 1723 42417 genus 6 1 1 1717 0 Halobacteroides halobius species 42422 1 14 family 972 5514 6 Halanaerobiaceae 0 2330 1 23 genus Halanaerobium 0 3 4545 species 656519 1966 1 Halanaerobium hydrogeniformans 0 2331 species Halanaerobium praevalens 0 2556 1 32636 genus 1 24 Halothermothrix 0 2 955 species 31909 1 931 Halothermothrix orenii 0 3 1 order 485256 4 1142 0 Natranaerobiales 485255 family 1 7 Natranaerobiaceae 0 1139 3 2 1132 0 Natranaerobius 10 1 genus 375928 Natranaerobius thermophilus 0 1 1122 375929 species 1445 1 0 no rank 84086 1445 1 0 endosymbiont 'TC1' of Trimyema compressum species 243899 Bacilli 0 346001 431 91061 class 1 310 165 104662 Lactobacillales 0 order 1 276 186826 0 1 773 263855 no rank species 1993866 773 1 0 Lactobacillales bacterium 0 Aerococcaceae 8 2814 186827 13 1 family 21 1 genus 1375 2801 7 0 Aerococcus 1 579 0 Aerococcus urinaeequi species 51665 1 329 0 Aerococcus sanguinicola species 119206 128944 species 0 Aerococcus urinaehominis 328 1 0 Aerococcus christensenii 1 445 87541 species species 1377 450 1 0 Aerococcus viridans Aerococcus urinae 0 649 1 1376 species 38008 58 0 Lactobacillaceae family 50 1 33958 0 2780 3 2767842 genus 60520 species Lactobacillus paraplantarum 0 1 398 species 1589 1 429 0 Lactobacillus pentosus species 1590 1 1953 Lactobacillus plantarum 0 1 490 0 genus 2767877 490 1 0 Lactobacillus kunkeei species 148814 587 1 0 genus 2767890 587 1 Lactobacillus hokkaidonensis 0 species 1193095 11530 16 Lactobacillus 0 1 278 genus 1578 1 1210 Lactobacillus helveticus 0 species 1587 0 Lactobacillus amylolyticus 1 428 83683 species 2620435 no rank 0 1761 4 Lactobacillus sp. wkB8 0 1 753 1545702 species 0 Lactobacillus sp. D1501 1 281 2108362 species Lactobacillus sp. CBA3605 0 411 1 2099788 species 2099789 species Lactobacillus sp. CBA3606 0 316 1 0 Lactobacillus delbrueckii 1 1252 1584 species species 1579 762 1 Lactobacillus acidophilus 0 267818 species 0 Lactobacillus kefiranofaciens 1 508 Lactobacillus acetotolerans 0 1 493 1600 species species 1596 1 1390 Lactobacillus gasseri 0 species 33959 1 1483 Lactobacillus johnsonii 0 0 Lactobacillus amylovorus 1 754 1604 species 109790 species Lactobacillus jensenii 0 1 723 species 52242 1 488 Lactobacillus gallinarum 0 4 3418 0 genus 2767887 species 1601 1 364 0 Lactobacillus agilis 1623 species 0 Lactobacillus ruminis 364 1 Lactobacillus acidipiscis 0 500 1 89059 species 0 Lactobacillus salivarius 2190 1 1624 species 1 63 genus 1253 6 3209 Pediococcus 0 species 114090 1 591 0 Pediococcus inopinatus 0 Pediococcus pentosaceus 859 1 1255 species 1 686 0 Pediococcus claussenii species 187452 0 394 1 1670797 species group 1254 species Pediococcus acidilactici 0 394 1 616 1 0 Pediococcus damnosus species 51663 0 1 264 2767876 genus species 1603 264 1 Lactobacillus amylophilus 0 2767893 genus 0 1241 3 Lactobacillus parabuchneri 0 1 358 152331 species 472 1 0 Lactobacillus curieae species 1138822 Lactobacillus buchneri 0 411 1 1581 species 0 4292 6 2767879 genus species 1074467 1 553 0 Lactobacillus heilongjiangensis 0 Lactobacillus ginsenosidimutans 1 846 1007676 species Lactobacillus farciminis 0 1 652 1612 species 392416 species Lactobacillus crustorum 0 1 758 1 724 Lactobacillus allii 0 species 1847728 1 759 0 Lactobacillus alimentarius species 1602 3 2343 0 genus 2742598 Lactobacillus reuteri 0 1433 1 1598 species 1 380 Lactobacillus mucosae 0 species 97478 Lactobacillus fermentum 0 1 530 1613 species 2767885 genus 0 2 1422 1 514 Lactobacillus curvatus 0 species 28038 species 1599 1 908 Lactobacillus sakei 0 0 3 2237 2759736 genus 1 677 Lactobacillus rhamnosus 0 species 47715 species 1582 1 858 0 Lactobacillus casei 1597 species Lactobacillus paracasei 0 702 1 0 1 494 2767892 genus 1 494 Lactobacillus paracollinoides 0 species 240427 2 1478 0 genus 2767881 1 589 Lactobacillus sanfranciscensis 0 species 1625 species 53444 1 889 0 Lactobacillus lindneri 0 1178 2 2767889 genus 499 1 0 Lactobacillus coryniformis species 1610 0 Lactobacillus backii 679 1 375175 species 2767886 genus 0 995 3 species 1580 553 1 Lactobacillus brevis 0 Lactobacillus koreensis 0 253 1 637971 species 267363 species Lactobacillus zymae 0 1 189 0 Carnobacteriaceae 11 6955 186828 42 1 family Marinilactibacillus 0 1060 2 191769 genus 1 4 1 1056 0 no rank 2632303 Marinilactibacillus sp. 15R 0 1 1056 1911586 species 1 7 genus 1470540 3 1418 Jeotgalibaca 0 617 1 Jeotgalibaca dankookensis 0 species 708126 no rank 2621505 794 1 0 1903686 species 0 Jeotgalibaca sp. PTS2502 1 794 2747 27 1 genus 0 Carnobacterium 4435 5 1 1610 0 Carnobacterium maltaromaticum species 2751 no rank 257487 2 1795 0 1 1121 0 Carnobacterium sp. 17-4 species 208596 Carnobacterium sp. CP1 0 1 674 1564681 species 147709 species Carnobacterium inhibens 0 1 1003 family 23 1 81850 7764 17 0 Leuconostocaceae 4771 9 0 Leuconostoc 33 1 genus 1243 1246 species Leuconostoc lactis 0 270 1 485 1 0 no rank 2685106 485 1 0 Leuconostoc sp. C2 species 979982 1 248 0 Leuconostoc garlicum species 255248 species 1244 990 1 0 Leuconostoc gelidum 33964 species Leuconostoc citreum 0 1 414 1252 species 0 Leuconostoc carnosum 1 588 506 1 Leuconostoc kimchii 0 species 136609 1 1237 0 Leuconostoc mesenteroides species 1245 601 1 0 genus 46254 0 Oenococcus oeni 601 1 1247 species Weissella 0 2369 6 46255 genus 1 6 Weissella jogaejeotgali 0 570 1 1631871 species 0 Weissella koreensis 1 587 165096 species 1 391 Weissella ceti 0 species 759620 1249 species 0 Weissella paramesenteroides 1 473 342 1 Weissella cibaria 0 species 137591 20 13540 0 Enterococcaceae 23 1 family 81852 51668 1 1 genus 0 Tetragenococcus 2 1145 species 51669 1 1144 Tetragenococcus halophilus 0 1233 2 0 Melissococcus genus 3 1 33969 0 Melissococcus plutonius 1 1230 33970 species Enterococcus 0 12 9358 1350 genus 1 75 53345 species Enterococcus durans 0 1 749 0 Enterococcus faecium 1509 1 1352 species species 417368 899 1 Enterococcus thailandicus 0 2005703 species Enterococcus wangshanyuanii 0 779 1 1 868 0 Enterococcus hirae species 1354 species 53346 1 960 Enterococcus mundtii 0 Enterococcus casseliflavus 0 1 505 37734 species 1351 species 0 Enterococcus faecalis 1 1464 3 1550 0 no rank 2608891 2060307 species Enterococcus sp. FDAARGOS_375 0 1 549 species 2057791 506 1 0 Enterococcus sp. CR-Ec1 2060306 species Enterococcus sp. FDAARGOS_163 0 495 1 2737 21 1 genus 0 Vagococcus 1781 3 1 917 0 Vagococcus teuberi species 519472 Vagococcus penaei 0 1 843 633807 species family 45 1 1300 34532 49 0 Streptococcaceae 1301 genus 1 259 Streptococcus 0 43 27399 315405 species Streptococcus gallolyticus 0 1207 1 1 790 0 Streptococcus thermophilus species 1308 no rank 2608887 2424 7 0 635 1 0 Streptococcus sp. 'group B' species 1319 1156431 species 0 Streptococcus sp. I-G2 1 240 245 1 Streptococcus sp. I-P16 0 species 1156433 266 1 0 Streptococcus sp. A12 species 1759399 species 712633 345 1 Streptococcus sp. oral taxon 431 0 0 Streptococcus sp. NPS 308 301 1 1902136 species species 1839799 392 1 Streptococcus sp. FDAARGOS_192 0 280 1 0 Streptococcus acidominimus species 1326 1241 1 Streptococcus pyogenes 0 species 1314 284 1 Streptococcus himalayensis 0 species 1888195 species 1811193 379 1 Streptococcus pantholopis 0 59310 species Streptococcus macedonicus 0 1 533 1405 1 0 Streptococcus agalactiae species 1311 1305 species 0 Streptococcus sanguinis 355 1 1 1070 0 Streptococcus gordonii species 1302 1335 species 0 Streptococcus equinus 369 1 1304 species 0 Streptococcus salivarius 1 1214 400065 species 0 Streptococcus merionis 393 1 150055 species 0 Streptococcus lutetiensis 448 1 102684 species Streptococcus infantarius 0 794 1 1439 1 Streptococcus suis 0 species 1307 0 Streptococcus pseudopneumoniae 1 386 257758 species species 1814128 1 352 0 Streptococcus halotolerans species group 119603 1521 2 0 species 1334 1 598 Streptococcus dysgalactiae 0 1336 species 0 Streptococcus equi 1 923 1349 species 0 Streptococcus uberis 1 652 species 1309 1 933 Streptococcus mutans 0 671232 species group 0 3 2294 Streptococcus anginosus 0 1046 1 1328 species 1 435 Streptococcus constellatus 0 species 76860 species 1338 813 1 0 Streptococcus intermedius 1313 species Streptococcus pneumoniae 0 1 1023 1 832 0 Streptococcus oralis species 1303 species 45634 298 1 0 Streptococcus cristatus species 197614 1 533 Streptococcus pasteurianus 0 0 Streptococcus iniae 1 595 1346 species 1318 species 0 Streptococcus parasanguinis 1 466 1 817 0 Streptococcus parauberis species 1348 28037 species Streptococcus mitis 0 967 1 1825069 species 0 Streptococcus marmotae 1 354 492 1 Streptococcus pluranimalium 0 species 82348 Lactococcus 0 7088 5 1357 1 8 genus Lactococcus garvieae 0 1 966 1363 species species 1364 1 931 Lactococcus piscium 0 species 1358 4752 1 Lactococcus lactis 0 1366 species Lactococcus raffinolactis 0 1 431 0 Bacillales 265 241029 1385 636 1 order 186818 family 1 52 Planococcaceae 0 27 18552 648800 1 19 genus Solibacillus 0 3 2241 0 Solibacillus silvestris 1120 1 76853 species 2637870 no rank 0 1 1102 1102 1 0 Solibacillus sp. R5-41 species 2048654 genus 5 1 1649 964 2 0 Kurthia no rank 2644826 959 1 0 Kurthia sp. 11kri321 0 1 959 1750719 species 858 2 0 Rummeliibacillus genus 2 1 648802 species 241244 1 856 0 Rummeliibacillus stabekisii 0 Planococcus 12 8737 1372 genus 105 1 species 1215089 1064 1 0 Planococcus halocryophilus 2662419 no rank 0 2 1320 0 Planococcus sp. MB-3u-03 500 1 2058136 species Planococcus sp. PAMC 21323 0 820 1 1526927 species 200991 species Planococcus rifietoensis 0 470 1 1 383 0 Planococcus plakortidis species 1038856 1 680 Planococcus antarcticus 0 species 161360 956 1 Planococcus maritimus 0 species 192421 1374 species Planococcus kocurii 0 876 1 1302659 species Planococcus sp. L10.15 0 1 1048 414778 species Planococcus donghaensis 0 940 1 1 895 Planococcus faecalis 0 species 1598147 genus 7 1 157226 905 2 0 Jeotgalibacillus species 1508404 898 1 Jeotgalibacillus malaysiensis 0 0 Sporosarcina 4795 5 1569 genus 30 1 2279 1 0 Sporosarcina ureae species 1571 0 Sporosarcina psychrophila 1642 1 1476 species 2647733 no rank 0 844 2 1 415 Sporosarcina sp. P37 0 species 1930546 1930764 species Sporosarcina sp. P33 0 429 1 123415 118 Bacillaceae 0 1 204 family 186817 1 579 0 genus 175304 579 1 Lentibacillus amyloliquefaciens 0 species 1472767 genus 1 1 29331 2 995 0 Amphibacillus 994 1 Amphibacillus xylanus 0 species 1449 genus 320 1 129337 7434 15 0 Geobacillus 1 685 Geobacillus stearothermophilus 0 species 1422 1505648 species group 0 4 2137 species 1462 1 338 0 Geobacillus kaustophilus 0 Geobacillus lituanicus 316 1 169283 species 1 1069 0 Geobacillus thermoleovorans species 33941 33938 species 0 Geobacillus thermocatenulatus 414 1 no rank 2642459 6 2829 0 Geobacillus sp. C56-T3 0 576 1 691437 species 581103 species 0 Geobacillus sp. Y4.1MC1 677 1 Geobacillus sp. GHH01 0 205 1 1233873 species species 544556 268 1 0 Geobacillus sp. Y412MC61 species 550542 1 243 Geobacillus sp. Y412MC52 0 471223 species 0 Geobacillus sp. WCH70 860 1 33940 species Geobacillus thermodenitrificans 0 667 1 1921421 species 0 Geobacillus genomosp. 3 1 427 129338 species Geobacillus subterraneus 0 369 1 58 76521 0 Bacillus genus 1607 1 1386 species 33932 1524 1 0 Bacillus cohnii 0 Bacillus beveridgei 511 1 632773 species 0 9438 9 653685 species group Bacillus subtilis 0 1 3642 1423 species 72361 species Bacillus vallismortis 0 1 109 0 Bacillus licheniformis 709 1 1402 species 119858 species Bacillus sonorensis 0 1 588 Bacillus atrophaeus 0 808 1 1452 species 1938374 species subgroup 0 3 2972 species 1390 1 1370 Bacillus amyloliquefaciens 0 0 Bacillus velezensis 1 1353 492670 species 249 1 0 Bacillus siamensis species 659243 1 610 0 Bacillus paralicheniformis species 1648923 0 Bacillus glycinifermentans 1 736 1664069 species 1398 species 0 Bacillus coagulans 1 1105 186 1 0 Bacillus gibsonii species 79881 1404 species 0 Bacillus megaterium 3594 1 Bacillus smithii 0 1 668 1479 species 955 1 Bacillus methanolicus 0 species 1471 0 35486 10 86661 species group 1 11815 0 Bacillus thuringiensis species 1428 580165 species Bacillus cytotoxicus 0 1 1063 0 Bacillus mycoides 4079 1 1405 species Bacillus cereus 0 12084 1 1396 species 0 Bacillus anthracis 1546 1 1392 species 155322 species Bacillus toyonensis 0 920 1 0 3 2867 2750818 no rank 751 1 0 Bacillus sp. ABP14 species 1892404 species 1839798 1 1292 0 Bacillus sp. FDAARGOS_235 Bacillus sp. HBCD-sjtu 0 1 824 2053832 species 658666 species Bacillus bombysepticus 0 1 1112 185979 no rank 0 7347 19 species 1941347 1 188 Bacillus sp. 275 0 species 1774743 1 263 0 Bacillus sp. SDLI1 species 2026248 359 1 Bacillus sp. 1s-1 0 species 1574141 1 159 Bacillus sp. YP1 0 0 Bacillus sp. X1(2014) 921 1 1565991 species species 1570330 1 94 Bacillus sp. BH072 0 1446792 species 0 Bacillus sp. Pc3 195 1 species 1827146 1006 1 Bacillus sp. IHB B 7164 0 species 1628753 141 1 0 Bacillus sp. LM 4-2 756828 species Bacillus sp. WP8 0 1 626 460 1 0 Bacillus sp. OxB-1 species 98228 0 Bacillus sp. SJ-10 183 1 563169 species 1 367 Bacillus sp. H15-1 0 species 1856406 1837130 species 0 Bacillus sp. FJAT-14266 1 402 species 666686 1203 1 0 Bacillus sp. 1NLA3E 121 1 0 Bacillus sp. Lzh-5 species 2049935 0 Bacillus sp. JS 241 1 1127744 species species 1409 167 1 Bacillus sp. (in: Bacteria) 0 0 Bacillus sp. MD-5 1 251 2009331 species Bacillus xiamenensis 0 1 705 1178537 species 86664 species Bacillus flexus 0 1254 1 703 1 0 species group 1792192 293387 species Bacillus altitudinis 0 1 703 species 1413 1323 1 Bacillus cellulosilyticus 0 1 1205 0 Bacillus weihaiensis species 1547283 species 324767 1 554 Bacillus infantis 0 Bacillus endophyticus 0 1554 1 135735 species 0 Bacillus aryabhattai 1119 1 412384 species 783 1 0 Bacillus horikoshii species 79883 1 2811 0 Bacillus pumilus species 1408 0 Bacillus safensis 1 1353 561879 species 1906945 genus 0 796 1 species 1426 1 796 Parageobacillus thermoglucosidasius 0 Anoxybacillus 0 4842 6 150247 genus 1 36 0 1760 2 2639704 no rank 1490057 species Anoxybacillus sp. B7M1 0 1 882 0 Anoxybacillus sp. B2M1 1 878 1490052 species species 33934 1 1341 Anoxybacillus flavithermus 0 Anoxybacillus gonensis 0 1 771 198467 species 934 1 0 Anoxybacillus amylolyticus species 294699 Halobacillus 0 1341 3 45667 1 7 genus 0 Halobacillus halophilus 1 673 1570 species Halobacillus mangrovi 0 661 1 402384 species genus 2675229 2769 2 0 1 2068 Bacillus simplex 0 species 1478 264697 species Bacillus muralis 0 701 1 84406 genus 32 1 0 Virgibacillus 7236 7 Virgibacillus necropolis 0 1273 1 163877 species 2017483 species 0 Virgibacillus phasianinus 966 1 1473 species 0 Virgibacillus pantothenticus 1441 1 2620237 no rank 0 2459 2 1102 1 Virgibacillus sp. SK37 0 species 403957 1911587 species 0 Virgibacillus sp. 6R 1 1357 1 1065 Virgibacillus halodenitrificans 0 species 1482 0 Aeribacillus 2 882 1055323 3 1 genus 0 Aeribacillus pallidus 879 1 33936 species 388 2 Salimicrobium 0 1 6 genus 351195 1230341 species Salimicrobium jeotgali 0 382 1 genus 182709 1 2337 0 1 2337 0 Oceanobacillus iheyensis species 182710 genus 2675234 5 5334 0 species 199441 1308 1 0 Bacillus krulwichiae species 300825 1137 1 0 Bacillus lehensis 0 Bacillus halodurans 639 1 86665 species species 79885 1005 1 0 Bacillus pseudofirmus 1 1245 Bacillus clausii 0 species 79880 genus 2 1 1329200 3 1641 0 Fictibacillus 0 Fictibacillus arsenicus 1 823 255247 species 1 816 0 Fictibacillus phosphorivorans species 1221500 genus 2675230 2389 2 0 0 Bacillus oceanisediminis 972 1 665099 species 1 1417 0 Bacillus kochii species 859143 2 557 Terribacillus 0 1 3 genus 459532 1 554 0 Terribacillus aidingensis species 586416 Lysinibacillus 0 7170 5 400634 1 28 genus Lysinibacillus fusiformis 0 1259 1 28031 species 1 3483 0 Lysinibacillus sphaericus species 1421 0 1326 1 2636778 no rank 2072025 species Lysinibacillus sp. YS11 0 1326 1 species 1145276 1 1074 0 Lysinibacillus varians Sporolactobacillaceae 0 546 2 186821 family 1 2 0 544 1 663587 no rank 1 544 [Bacillus] selenitireducens 0 species 85683 0 Listeriaceae 9 7791 186820 family 4 1 9 1 genus 2755 943 2 0 Brochothrix 0 Brochothrix thermosphacta 1 934 2756 species 6844 6 Listeria 0 genus 1 80 1637 1638 species Listeria ivanovii 0 1 1439 0 Listeria innocua 1 934 1642 species species 1639 2708 1 0 Listeria monocytogenes 744 1 0 Listeria seeligeri species 1640 939 1 0 Listeria welshimeri species 1643 Thermoactinomycetaceae 0 3 374 186824 family 1 7 genus 1 3 1677050 367 2 Novibacillus 0 0 Novibacillus thermophilus 1 364 1471761 species Alicyclobacillaceae 0 3478 9 186823 1 10 family 1 12 genus 432330 3 1429 Tumebacillus 0 0 Tumebacillus avium 1 921 1903704 species Tumebacillus algifaecis 0 496 1 1214604 species 6 1 genus 29330 968 2 0 Alicyclobacillus Alicyclobacillus acidocaldarius 0 1 962 405212 species 1071 3 0 Kyrpidia 1 1 genus 1129704 0 Kyrpidia sp. EA-1 524 1 2055160 species species 33943 546 1 0 Kyrpidia tusciae 186822 family 77 1 0 Paenibacillaceae 46 38293 55080 1 13 genus Brevibacillus 0 3945 4 species 1393 1253 1 0 Brevibacillus brevis 0 Brevibacillus laterosporus 1962 1 1465 species 717 1 0 Brevibacillus formosus species 54913 Paenibacillus 0 32274 36 44249 genus 1 174 species 159743 1 552 0 Paenibacillus terrae 481 1 Paenibacillus naphthalenovorans 0 species 162209 0 Paenibacillus odorifer 1 757 189426 species 1126833 species Paenibacillus beijingensis 0 702 1 Paenibacillus polymyxa 0 1 4335 1406 species 1 1049 0 Paenibacillus larvae species 1464 1870820 species Paenibacillus ihbetae 0 608 1 923 1 0 Paenibacillus crassostreae species 1763538 species 160799 1 946 0 Paenibacillus borealis species 1616788 1 1100 0 Paenibacillus bovis species 1462996 489 1 Paenibacillus yonginensis 0 0 Paenibacillus xylanexedens 1 615 528191 species 1489 1 Paenibacillus donghaensis 0 species 414771 693 1 0 species group 2044880 693 1 Paenibacillus riograndensis 0 species 483937 172713 species 0 Paenibacillus kribbensis 523 1 species 59893 1 1056 0 Paenibacillus peoriae Paenibacillus swuensis 0 595 1 1178515 species species 365617 1 435 Paenibacillus sabinae 0 species 189425 1249 1 0 Paenibacillus graminis 169760 species Paenibacillus stellifer 0 533 1 185978 no rank 0 10322 13 589 1 0 Paenibacillus sp. JDR-2 species 324057 1870819 species 0 Paenibacillus sp. BIHB4019 1 877 1536774 species Paenibacillus sp. FSL H7-0357 0 1 752 1536773 species Paenibacillus sp. FSL R7-0331 0 656 1 0 Paenibacillus sp. FSL R5-0345 1033 1 1536770 species 1 723 Paenibacillus sp. 32O-W 0 species 1695218 Paenibacillus sp. FSL H7-0737 0 810 1 1536775 species 1 604 Paenibacillus sp. Y412MC10 0 species 481743 672 1 Paenibacillus sp. lzh-N1 0 species 2069255 1 1107 Paenibacillus sp. IHBB 10380 0 species 1566358 1536772 species Paenibacillus sp. FSL R7-0273 0 1 706 1082 1 0 Paenibacillus sp. FSL P4-0081 species 1536769 1 711 0 Paenibacillus sp. FSL R5-0912 species 1536771 1 1545 0 Paenibacillus mucilaginosus species 61624 species 44251 1 1103 Paenibacillus durus 0 85151 no rank 0 1145 3 genus 10 1 55079 1145 3 0 Aneurinibacillus 0 547 1 2642329 no rank species 1450761 1 547 Aneurinibacillus sp. XH2 0 species 1500254 1 588 0 Aneurinibacillus soli 76632 genus 5 1 0 Thermobacillus 2 852 847 1 Thermobacillus composti 0 species 377615 no rank 539002 9 3126 0 no rank 539738 979 2 0 0 Gemella 979 2 1378 4 1 genus 975 1 0 no rank 2624949 1785995 species 0 Gemella sp. oral taxon 928 1 975 no rank 539742 7 2147 0 genus 34 1 33986 7 2147 0 Exiguobacterium Exiguobacterium antarcticum 0 1 283 132920 species 0 4 1493 2644629 no rank Exiguobacterium sp. U13-1 0 417 1 1849031 species Exiguobacterium sp. ZWU0009 0 454 1 1224749 species species 1399115 1 341 Exiguobacterium sp. MH3 0 1 281 0 Exiguobacterium sp. AT1b species 360911 0 Exiguobacterium sibiricum 1 337 332410 species Staphylococcaceae 0 41 44818 90964 1 61 family 33 41286 0 Staphylococcus genus 304 1 1279 170573 species 0 Staphylococcus pettenkoferi 1 479 1281 species Staphylococcus carnosus 0 1 937 species 985762 1 727 0 Staphylococcus agnetis 45972 species 0 Staphylococcus pasteuri 1 3013 Staphylococcus nepalensis 0 1 1160 214473 species 0 Staphylococcus felis 782 1 46127 species 0 Staphylococcus stepanovicii 1 1221 643214 species 0 Staphylococcus argenteus 1 1247 985002 species no rank 91994 1 1085 0 Staphylococcus sp. AntiMn-1 0 1 1085 1715860 species 0 Staphylococcus sciuri 1574 1 1296 species 0 Staphylococcus hyicus 667 1 1284 species 573 1 Staphylococcus muscae 0 species 1294 1 2388 0 Staphylococcus epidermidis species 1282 29384 species 0 Staphylococcus kloosii 1 1068 Staphylococcus lutrae 0 1 709 155085 species Staphylococcus xylosus 0 1 2032 1288 species species 1292 1 1123 Staphylococcus warneri 0 664 1 Staphylococcus piscifermentans 0 species 70258 Staphylococcus saprophyticus 0 1 1180 29385 species 1659 1 Staphylococcus equorum 0 species 246432 822 1 Staphylococcus simulans 0 species 1286 0 Staphylococcus pseudintermedius 884 1 283734 species Staphylococcus cohnii 0 1 1197 29382 species 61015 species Staphylococcus succinus 0 1 1080 1423 1 Staphylococcus haemolyticus 0 species 1283 species 1290 1286 1 0 Staphylococcus hominis 0 Staphylococcus condimenti 1 1110 70255 species 1228 1 0 Staphylococcus capitis species 29388 0 Staphylococcus aureus 1 4149 1280 species 1091 1 0 Staphylococcus lugdunensis species 28035 Staphylococcus simiae 0 1 1306 308354 species Staphylococcus schleiferi 0 1118 1 1295 species genus 8 1 69965 4 2327 0 Macrococcus 0 922 1 2619255 no rank 1 922 0 Macrococcus sp. IME1552 species 1898474 1 639 Macrococcus canis 0 species 1855823 1 758 0 Macrococcus caseolyticus species 69966 2005363 genus 0 1 774 1849491 species Auricoccus indicus 0 774 1 0 Salinicoccus 2 370 45669 genus 2 1 species 407035 1 368 Salinicoccus halodurans 0 909932 class 21 1 0 Negativicutes 11125 30 0 Acidaminococcales 871 5 1843488 order 8 1 909930 1 10 family Acidaminococcaceae 0 863 4 Acidaminococcus 0 3 853 904 genus 1 3 0 Acidaminococcus intestini 1 361 187327 species 1 489 0 Acidaminococcus fermentans species 905 2900 10 0 Veillonellales 9 1 order 1843489 0 Veillonellaceae 9 2891 31977 family 16 1 1204 3 Veillonella 0 genus 1 1 29465 species 248315 1 328 Veillonella rodentium 0 species 29466 875 1 Veillonella parvula 0 666 2 Megasphaera 0 1 2 genus 906 664 1 Megasphaera elsdenii 0 species 907 genus 909928 1 328 0 0 Negativicoccus massiliensis 1 328 1702287 species Dialister 0 677 2 39948 1 4 genus 39950 species 0 Dialister pneumosintes 673 1 14 7333 Selenomonadales 0 order 1 30 909929 9 3541 0 Selenomonadaceae 24 1 family 1843491 158846 genus 1 3 Megamonas 0 2 1155 158847 species 0 Megamonas hypermegale 1152 1 1 66 genus 970 2362 6 Selenomonas 0 no rank 2637378 1167 3 0 413 1 0 Selenomonas sp. oral taxon 136 species 713030 0 Selenomonas sp. oral taxon 920 319 1 1884263 species 435 1 0 Selenomonas sp. oral taxon 478 species 712538 1 566 0 Selenomonas ruminantium species 971 species 69823 563 1 0 Selenomonas sputigena 4 3762 Sporomusaceae 0 family 1 17 1843490 3745 3 0 Pelosinus genus 5 1 365348 no rank 2629460 2381 1 0 0 Pelosinus sp. UFO1 1 2381 484770 species 1 1359 Pelosinus fermentans 0 species 365349 33974 no rank 0 2 234 1930845 1 5 genus Ndongobacter 0 2 234 species 1871025 1 229 0 Ndongobacter massiliensis 8443 18 0 Tissierellia 25 1 class 1737404 15 7570 Tissierellales 0 1 21 order 1737405 5838 11 Peptoniphilaceae 0 1 42 family 1570339 2 1302 Finegoldia 0 1 3 genus 150022 species 1260 1299 1 Finegoldia magna 0 Peptoniphilus 0 821 2 162289 1 6 genus 1 815 0 no rank 2637196 815 1 Peptoniphilus sp. ING2-D1G 0 species 1912856 Parvimonas 0 2 1630 543311 genus 1 6 33033 species Parvimonas micra 0 1624 1 165779 2 1 genus 0 Anaerococcus 1586 3 Anaerococcus prevotii 0 810 1 33034 species 1870984 species Anaerococcus mediterraneensis 0 1 774 genus 1161127 1 457 0 457 1 Murdochiella vaginalis 0 species 1852373 2042895 family 5 1 0 Gottschalkiaceae 1711 3 1505664 1 3 genus Gottschalkia 0 1706 2 species 1556 1 1703 0 Gottschalkia acidurici 0 848 2 1737407 no rank 1582879 1 17 genus Ezakiella 0 2 848 1852374 species 0 Ezakiella massiliensis 831 1 0 Limnochordia 1068 5 1676648 class 5 1 4 1063 0 Limnochordales order 22 1 1676649 0 Limnochordaceae 1041 3 1676650 12 1 family 1029 2 0 Limnochorda 34 1 genus 1676651 species 1555112 995 1 0 Limnochorda pilosa 0 Chloroflexi 46 12000 200795 8 1 phylum 32061 class 14 1 0 Chloroflexia 4004 11 Chloroflexales 0 3990 10 32064 order 1 25 4 1823 0 suborder 1508595 Roseiflexaceae 0 4 1823 1508635 1 4 family 1 19 genus 120961 1819 3 Roseiflexus 0 no rank 2609473 921 1 0 Roseiflexus sp. RS-1 0 1 921 357808 species 120962 species Roseiflexus castenholzii 0 1 879 1508594 suborder 0 5 2142 1106 family 1 4 Chloroflexaceae 0 5 2142 0 Chloroflexus 4 2138 1107 15 1 genus 152260 species Chloroflexus aggregans 0 1 858 0 Chloroflexus aurantiacus 1265 2 1108 633 1 species 480224 strain 0 Chloroflexus sp. Y-400-fl 632 1 0 Ardenticatenia 2161 5 1382928 13 1 class 4 2148 0 Ardenticatenales 25 1 order 1382929 1382930 8 1 family 0 Ardenticatenaceae 2123 3 Candidatus Promineofilum 0 2 2115 1988031 genus 1 9 1 2106 Candidatus Promineofilum breve 0 species 1806508 6 1 class 301297 1661 8 0 Dehalococcoidia order 1202465 4 937 0 Dehalococcoidaceae 0 4 937 1202464 1 5 family 1 2 genus 61434 932 3 Dehalococcoides 0 237581 no rank 0 235 1 0 Dehalococcoides sp. UCH007 235 1 1522671 species 61435 species 0 Dehalococcoides mccartyi 695 1 0 Dehalogenimonas 3 718 670486 12 1 genus species 1839801 380 1 Dehalogenimonas formicexedens 0 species 552810 326 1 0 Dehalogenimonas lykanthroporepellens class 1 5 189775 8 1756 Thermomicrobia 0 0 1323 4 85000 subclass 85001 22 1 order 0 Sphaerobacterales 1323 4 1301 3 0 suborder 255728 Sphaerobacteraceae 0 1301 3 85002 family 1 12 Sphaerobacter 0 1289 2 2056 genus 1 4 2057 species 0 Sphaerobacter thermophilus 1 1285 0 428 3 189776 order 189777 2 1 family 0 Thermomicrobiaceae 3 428 1 1 genus 499 426 2 0 Thermomicrobium species 500 425 1 0 Thermomicrobium roseum Anaerolineae 0 1374 8 292625 1 9 class 292629 1 3 order Anaerolineales 0 1365 7 family 6 1 292628 1362 6 0 Anaerolineaceae 0 1 418 1324991 no rank Anaerolineaceae bacterium oral taxon 439 0 418 1 1889813 species 233189 1 2 genus Anaerolinea 0 500 2 167964 species Anaerolinea thermophila 0 498 1 438 2 0 Brevefilum genus 3 1 2019482 435 1 0 Brevefilum fermentans species 1986204 0 Caldilineae 5 1036 475962 class 6 1 Caldilineales 0 4 1030 475963 1 12 order family 1 1 475964 1018 3 0 Caldilineaceae 1017 2 Caldilinea 0 1 21 genus 233191 species 133453 996 1 Caldilinea aerophila 0 19921 35 0 phylum 1297 100 1 class 188787 35 19921 0 Deinococci Thermales 0 17 8628 68933 order 1 77 188786 68 1 family 0 Thermaceae 8551 16 Marinithermus 0 2 678 186191 genus 1 3 species 186192 1 675 0 Marinithermus hydrothermalis 1 8 genus 65551 1486 3 Meiothermus 0 Meiothermus silvanus 0 1 625 52022 species 853 1 Meiothermus ruber 0 species 277 genus 1 111 270 5247 8 Thermus 0 37636 species 0 Thermus scotoductus 1 403 0 582 1 2619321 no rank 0 Thermus sp. CCB_US3_UF1 1 582 1111069 species species 274 1626 1 Thermus thermophilus 0 0 Thermus brockianus 1 592 56956 species 56957 species 0 Thermus oshimai 661 1 species 456163 660 1 0 Thermus parvatiensis species 271 1 612 0 Thermus aquaticus genus 1 9 208447 1072 2 Oceanithermus 0 1 1063 0 Oceanithermus profundus species 187137 order 131 1 118964 10143 15 0 Deinococcales 183710 59 1 family 0 Deinococcaceae 10012 14 158 1 genus 1298 13 9953 0 Deinococcus 1768108 species Deinococcus actinosclerus 0 837 1 1182571 species 0 Deinococcus swuensis 811 1 432329 species Deinococcus peraridilitoris 0 770 1 species 309887 1060 1 0 Deinococcus maricopensis species 55148 1 973 0 Deinococcus proteolyticus 1309411 species 0 Deinococcus soli Cha et al. 2016 1 944 68909 species 0 Deinococcus geothermalis 697 1 502394 species 0 Deinococcus gobiensis 1044 1 species 1182568 1 540 Deinococcus puniceus 0 1299 species 0 Deinococcus radiodurans 751 1 2623546 no rank 0 845 1 2080419 species 0 Deinococcus sp. NW-56 1 845 310783 species 0 Deinococcus deserti 523 1 2 1050 0 order 2762275 332247 family 0 2 1050 1050 2 0 Truepera 10 1 genus 332248 332249 species 0 Truepera radiovictrix 1 1040 no rank 1859062 428 2 0 262406 genus 3 1 0 Thermobaculum 2 428 166501 species Thermobaculum terrenum 0 1 425 200918 phylum 0 44 20173 44 20173 0 Thermotogae 53 1 class 188708 1643946 1 9 order Kosmotogales 0 7 1555 1 13 family 1643948 1546 6 Kosmotogaceae 0 1184396 1 6 genus Mesotoga 0 2 384 1 378 Mesotoga prima 0 species 1184387 1 12 genus 651456 3 1149 Kosmotoga 0 1330330 species Kosmotoga pacifica 0 687 1 species 651457 450 1 Kosmotoga olearia 0 6186 8 Petrotogales 0 order 1 13 1643947 7 6173 0 family 1643949 1441 2 Defluviitoga 0 genus 1 6 1511648 1 1435 Defluviitoga tunisiensis 0 species 1006576 2 1034 Petrotoga 0 genus 1 2 28236 species 69499 1 1032 Petrotoga mobilis 0 160798 1 48 genus Marinitoga 0 3 3698 1810 1 0 no rank 2640159 species 1545835 1810 1 0 Marinitoga sp. 1137 Marinitoga piezophila 0 1 1840 149715 species 1 62 order 2419 12379 28 Thermotogales 0 Fervidobacteriaceae 0 10 7585 1643950 family 1 29 63 1 genus 2420 5326 5 0 Thermosipho species 46541 1327 1 Thermosipho melanesiensis 0 2676525 no rank 0 2 2281 species 1462747 1 1122 0 Thermosipho sp. 1063 1437364 species Thermosipho sp. 1070 0 1159 1 1 1655 Thermosipho africanus 0 species 2421 34 1 genus 2422 4 2230 0 Fervidobacterium 0 Fervidobacterium islandicum 1 409 2423 species 0 Fervidobacterium nodosum 906 1 2424 species species 93466 1 881 0 Fervidobacterium pennivorans 1 7 family 188709 17 4732 Thermotogaceae 0 genus 1 70 2335 2567 11 Thermotoga 0 1508419 species 0 Thermotoga caldifontis 1 182 2337 species 0 Thermotoga neapolitana 1 253 species 93930 197 1 Thermotoga naphthophila 0 0 Thermotoga maritima 269 1 2336 species 2631113 no rank 0 831 4 0 Thermotoga sp. RQ7 222 1 126738 species species 1157947 180 1 Thermotoga sp. Cell2 0 species 1157948 1 224 Thermotoga sp. 2812B 0 0 Thermotoga sp. RQ2 205 1 126740 species 566 1 0 Thermotoga profunda species 1508420 0 Thermotoga petrophila 199 1 93929 species 17 1 genus 1643951 5 2158 0 Pseudothermotoga 177758 species Pseudothermotoga lettingae 0 664 1 119394 species 0 Pseudothermotoga thermarum 1 664 0 Pseudothermotoga hypogea 1 167 57487 species Pseudothermotoga elfii 0 1 646 38322 species phylum 6 1 74152 11 2483 0 Elusimicrobia class 641853 3 463 0 1 2 order 641854 3 463 Elusimicrobiales 0 2 461 Elusimicrobiaceae 0 1 4 family 641876 0 457 1 423604 genus 0 Elusimicrobium minutum 457 1 423605 species 655 1 0 no rank 99260 species 167965 1 655 0 uncultured Termite group 1 bacterium 6 1359 Endomicrobia 0 class 1 1 447830 1 2 order 1783344 1358 5 Endomicrobiales 0 1356 4 0 Endomicrobiaceae family 2 1 1783343 3 1354 Endomicrobium 0 genus 1 7 1408194 1 754 Endomicrobium proavitum 0 species 1408281 Candidatus Endomicrobium trichonymphae 0 593 1 1408204 species phylum 68297 6 2407 0 class 3 1 203486 2407 6 0 Dictyoglomia 203487 order 9 1 0 Dictyoglomales 5 2404 203488 1 10 family Dictyoglomaceae 0 4 2395 Dictyoglomus 0 2385 3 13 1 4 genus 1193 1 0 Dictyoglomus turgidum species 513050 Dictyoglomus thermophilum 0 1 1188 14 species clade 1783257 50096 99 0 203682 phylum 0 27150 38 666505 class 16 1 0 Phycisphaerae 7 3876 order 2483366 2 1027 0 1027 2 0 family 2483367 2483368 genus 0 2 1027 0 Phycisphaerae bacterium L21-RPul-D3 447 1 1940790 species 580 1 0 Phycisphaerae bacterium ST-PulAB-D4 species 1941349 666506 1 24 order Phycisphaerales 0 2833 4 family 13 1 666507 3 2809 0 Phycisphaeraceae 2796 2 Phycisphaera 0 genus 1 22 666508 1 2774 0 Phycisphaera mikurensis species 547188 class 68 1 203683 20902 27 0 Planctomycetia 9030 11 0 Planctomycetales order 278 1 112 1 103 family 126 10 8752 Planctomycetaceae 0 1936111 1 3 genus Fuerstia 0 2 1618 species 1891926 1615 1 Fuerstia marisgermanicae 0 3 4976 Planctomyces 0 1 58 genus 118 no rank 2648843 4918 2 0 Planctomyces sp. SH-PL62 0 1 2812 1636152 species 1 2106 Planctomyces sp. SH-PL14 0 species 1632864 1649480 1 2 genus Planctopirus 0 757 2 1 755 0 Planctopirus limnophila species 120 2 1298 Rubinisphaera 0 1 30 genus 1649490 0 Rubinisphaera brasiliensis 1 1268 119 species 2691356 order 0 6272 7 1 51 family 1763524 7 6272 Isosphaeraceae 0 466152 genus 1 32 Singulisphaera 0 1998 2 Singulisphaera acidiphila 0 1966 1 466153 species 0 Isosphaera 1424 2 127 genus 35 1 species 128 1389 1 0 Isosphaera pallida 1 22 genus 1763521 2 2799 Paludisphaera 0 1387353 species 0 Paludisphaera borealis 2777 1 order 2691355 2143 3 0 Gemmataceae 0 3 2143 1914233 1 8 family Gemmata 0 2 2135 113 1 57 genus no rank 2622970 2078 1 0 1630693 species Gemmata sp. SH-PL17 0 1 2078 order 2691354 5 3389 0 4 2764 0 family 2691357 0 Rhodopirellula 2 1386 265488 genus 31 1 species 265606 1 1355 Rhodopirellula baltica 0 0 Pirellula 2 1378 123 genus 3 1 species 125 1375 1 Pirellula staleyi 0 0 1 625 2691358 family genus 1676125 625 1 0 1 625 0 Thermogutta terrifontis species 1331910 0 4 2372 2517206 class 4 2372 Candidatus Brocadiales 0 order 1 14 1127829 3 2358 Candidatus Brocadiaceae 0 1 9 family 1127830 2 2349 Candidatus Kuenenia 0 genus 1 13 380738 174633 species Candidatus Kuenenia stuttgartiensis 0 2336 1 phylum 256845 3 1202 0 class 15 1 1313211 1202 3 0 Lentisphaeria 0 Victivallales 2 1187 278082 order 14 1 0 1173 1 1674876 no rank species 2094242 1173 1 Victivallales bacterium CCUG 44730 0 phylum 204428 7113 26 0 7113 26 0 Chlamydiia class 30 1 204429 Chlamydiales 0 4775 14 51291 1 27 order Chlamydiaceae 0 13 4748 809 1 11 family 12 4737 0 no rank 1113537 Chlamydia 0 12 4737 810 1 68 genus Chlamydia muridarum 0 370 1 83560 species species 83555 313 1 Chlamydia abortus 0 813 species Chlamydia trachomatis 0 345 1 1 409 Chlamydia avium 0 species 1457141 species 83558 1 572 0 Chlamydia pneumoniae Chlamydia gallinacea 0 405 1 1457153 species species 83559 280 1 0 Chlamydia suis 83557 species 0 Chlamydia caviae 476 1 Chlamydia psittaci 0 1 552 83554 species 535 1 0 Chlamydia pecorum species 85991 Chlamydia felis 0 412 1 83556 species 1963360 order 1 16 Parachlamydiales 0 2308 11 Parachlamydiaceae 0 1302 4 92713 1 4 family 0 Parachlamydia 2 756 83551 genus 2 1 83552 species 0 Parachlamydia acanthamoebae 1 754 genus 282132 542 1 0 Candidatus Protochlamydia naegleriophila 0 542 1 389348 species 3 461 Waddliaceae 0 family 1 7 92714 71666 genus 1 2 Waddlia 0 454 2 1 452 Waddlia chondrophila 0 species 71667 Simkaniaceae 0 3 529 92712 1 3 family Simkania 0 526 2 34093 1 2 genus species 83561 1 524 0 Simkania negevensis 0 Verrucomicrobia 13541 27 74201 phylum 20 1 Opitutae 0 7699 11 414999 1 24 class Opitutales 0 5817 7 415000 order 1 31 134623 49 1 family 0 Opitutaceae 5786 6 278955 no rank 0 1 2203 794903 species Opitutaceae bacterium TAV5 0 1 2203 0 Lacunisphaera 1848 2 1961799 genus 2 1 1 1846 0 Lacunisphaera limnophila species 1838286 178440 3 1 genus 0 Opitutus 1686 2 107709 species Opitutus terrae 0 1683 1 415001 order 0 3 1858 Puniceicoccaceae 0 3 1858 415002 family 1 5 1853 2 0 Coraliomargarita 9 1 genus 442430 1 1844 0 Coraliomargarita akajimensis species 395922 1 3 class 203494 1649 6 Verrucomicrobiae 0 0 Verrucomicrobiales 5 1646 48461 9 1 order 1647988 family 1 5 Akkermansiaceae 0 1637 4 Akkermansia 0 1632 3 239934 genus 1 20 Akkermansia glycaniphila 0 922 1 1679444 species 690 1 0 Akkermansia muciniphila species 239935 417295 no rank 0 2 2557 0 Verrucomicrobia bacterium 1 1498 2026799 species species 1637999 1 1059 0 Verrucomicrobia bacterium IMCC26134 0 1302 5 1955630 class 5 1302 Methylacidiphilales 0 1 2 order 717963 717964 family 3 1 0 Methylacidiphilaceae 1300 4 511745 genus 1 4 Methylacidiphilum 0 1297 3 591154 species Methylacidiphilum fumariolicum 0 826 1 467 1 0 Methylacidiphilum infernorum species 511746 0 314 2 134549 class Candidatus Xiphinematobacter 0 2 314 134550 genus 1 7 no rank 2648876 1 307 0 307 1 Candidatus Xiphinematobacter sp. Idaho Grape 0 species 1704307 phylum 134625 5 1090 0 1 3 class 1921781 1090 5 Kiritimatiellae 0 1921782 order 1 9 Kiritimatiellales 0 4 1087 10 1 family 1921783 3 1078 0 Kiritimatiellaceae 2 1068 0 Kiritimatiella 11 1 genus 1921784 species 1307763 1 1057 0 Kiritimatiella glycovorans phylum 200783 11182 29 0 class 23 1 187857 29 11182 0 Aquificae 32069 order 15 1 0 Aquificales 9211 22 0 Aquificaceae 4553 13 64898 family 5 1 168657 1 125 genus Hydrogenobaculum 0 6 3549 no rank 2622382 5 3424 0 547145 species 0 Hydrogenobaculum sp. SHO 696 1 640 1 Hydrogenobaculum sp. Y04AAS1 0 species 380749 0 Hydrogenobaculum sp. 3684 1 696 547143 species 0 Hydrogenobaculum sp. HO 696 1 547144 species 547146 species 0 Hydrogenobaculum sp. SN 1 696 genus 5 1 939 2 292 0 Hydrogenobacter 940 species 0 Hydrogenobacter thermophilus 287 1 2713 genus 0 270 1 270 1 0 Aquifex aeolicus species 63363 1 4 genus 75905 437 3 Thermocrinis 0 species 75906 1 242 0 Thermocrinis ruber 136094 species Thermocrinis albus 0 191 1 0 471 2 90150 no rank 412592 genus 1 6 Thermosulfidibacter 0 2 471 465 1 0 Thermosulfidibacter takaii species 412593 Hydrogenothermaceae 0 6 4172 224027 1 7 family 982 2 0 Persephonella genus 8 1 182899 0 Persephonella marina 1 974 309805 species 212790 25 1 genus 0 Sulfurihydrogenibium 3 3183 2619248 no rank 0 1701 1 436114 species Sulfurihydrogenibium sp. YO3AOP1 0 1701 1 1457 1 Sulfurihydrogenibium azorense 0 species 309806 order 3 1 1485951 1948 6 0 Desulfurobacteriales family 21 1 558314 5 1945 0 Desulfurobacteriaceae 171868 3 1 genus 0 Thermovibrio 299 2 Thermovibrio ammonificans 0 1 296 228745 species 64159 9 1 genus 0 Desulfurobacterium 2 1625 1 1616 Desulfurobacterium thermolithotrophum 0 species 64160 2157 superkingdom 0 107286 314 70 15296 0 clade 1783275 1 129 0 phylum 51967 498845 genus 0 129 1 1 129 Candidatus Korarchaeum cryptofilum 0 species 498846 28889 phylum 0 51 6948 183924 class 0 51 6948 0 3362 11 2281 order 118883 7 1 family 0 Sulfolobaceae 3362 11 genus 12914 440 1 0 0 Acidianus hospitalis 1 440 563177 species 1 1 genus 41980 3 309 0 Metallosphaera species 1006005 1 167 0 Metallosphaera cuprina Metallosphaera sedula 0 1 141 43687 species 0 Sulfolobus 4 1521 2284 10 1 genus 1 712 Sulfolobus islandicus 0 species 43080 2285 species 0 Sulfolobus acidocaldarius 1 327 no rank 2641160 472 1 0 1891280 species Sulfolobus sp. A20 0 472 1 genus 2100760 443 1 0 Sulfolobus solfataricus 0 443 1 2287 species genus 69655 1 642 0 1 642 0 Sulfolobus tokodaii species 111955 0 Thermoproteales 1380 17 2266 3 1 order 114378 1 1 family 0 Thermofilaceae 6 562 0 Thermofilum 561 5 2268 genus 7 1 species 1483572 124 1 0 Thermofilum carboxyditrophus 147 1 0 Thermofilum pendens species 2269 species 1365176 1 155 Thermofilum adornatus 0 1550241 species Thermofilum uzonense 0 1 128 10 815 Thermoproteaceae 0 1 1 family 2267 2 156 0 Caldivirga genus 2 1 76886 Caldivirga maquilingensis 0 1 154 76887 species 164450 genus 1 2 Vulcanisaeta 0 3 261 species 164451 107 1 0 Vulcanisaeta distributa 152 1 0 Vulcanisaeta moutnovskia species 985052 genus 2270 2 273 0 0 Thermoproteus tenax 1 136 2271 species 1 137 Thermoproteus uzoniensis 0 species 184117 genus 1 2 2276 124 2 Pyrobaculum 0 0 Pyrobaculum islandicum 1 122 2277 species 114380 order 5 1 0 Desulfurococcales 19 1540 2272 1 8 family Desulfurococcaceae 0 12 1162 genus 6 1 477695 2 124 0 Thermogladius 1200300 species Thermogladius calderae 0 118 1 54258 genus 4 1 0 Ignicoccus 3 206 160233 species Ignicoccus hospitalis 0 123 1 54259 species Ignicoccus islandicus 0 79 1 54253 genus 0 109 1 109 1 0 Thermosphaera aggregans species 54254 0 183 2 2273 genus species 2275 57 1 Desulfurococcus mucosus 0 94694 species 0 Desulfurococcus amylolyticus 126 1 3 532 Staphylothermus 0 1 8 genus 2279 species 2280 1 315 Staphylothermus marinus 0 0 Staphylothermus hellenicus 209 1 84599 species 373 6 Pyrodictiaceae 0 family 1 12 2307 Pyrodictium 0 2 90 2308 genus 1 1 1 89 0 Pyrodictium delaneyi species 1273541 1 100 0 genus 54251 54252 species Pyrolobus fumarii 0 100 1 2 171 Hyperthermus 0 genus 1 2 54247 169 1 0 Hyperthermus butylicus species 54248 order 871006 666 4 0 0 84 1 871007 family 0 84 1 105850 genus 1 84 0 Acidilobus saccharovorans species 242703 255472 2 1 family 0 Caldisphaeraceae 582 3 genus 1 1 200414 2 580 Caldisphaera 0 200415 species Caldisphaera lagunensis 0 579 1 8219 18 0 phylum 651137 2050 5 0 no rank 651142 0 Candidatus Nitrosopelagicus 1500 2 1593364 genus 4 1 1 1496 0 Candidatus Nitrosopelagicus brevis species 1410606 3 1 genus 1825023 550 3 0 Candidatus Nitrosotenuis Candidatus Nitrosotenuis sp. AQ6f 0 255 1 1846278 species species 1603555 1 292 Candidatus Nitrosotenuis cloacae 0 order 1 3 31932 7 3374 Nitrosopumilales 0 family 1 2 338190 3371 6 Nitrosopumilaceae 0 2 1079 Candidatus Nitrosomarinus 0 genus 1 8 1993653 Candidatus Nitrosomarinus catalina 0 1071 1 1898749 species Nitrosopumilus 0 3 2290 338191 genus 1 8 1 1394 0 Candidatus Nitrosopumilus adriaticus species 1580092 Candidatus Nitrosopumilus sediminis 0 888 1 1229909 species class 1 2 1643678 6 2795 Nitrososphaeria 0 0 1443 2 1968909 order 0 1443 2 1968910 family Candidatus Nitrosocaldus 0 1443 2 498374 1 2 genus 2045011 species 0 Candidatus Nitrosocaldus islandicus 1441 1 1033996 order 0 1350 3 0 Nitrososphaeraceae 3 1350 1033997 family 2 1 2 1348 Nitrososphaera 0 genus 1 2 497726 1034015 species Nitrososphaera viennensis 0 1346 1 243 91908 0 Euryarchaeota 5 1 phylum 28890 12 1638 0 class 183980 order 2 1 2231 1638 12 0 Archaeoglobales 11 1636 0 Archaeoglobaceae family 11 1 2232 230 2 0 Ferroglobus 1 1 genus 54260 species 54261 1 229 0 Ferroglobus placidus genus 1 4 190818 358 3 Geoglobus 0 565033 species 0 Geoglobus acetivorans 179 1 1 175 Geoglobus ahangari 0 species 113653 1037 5 Archaeoglobus 0 1 26 genus 2233 1 239 0 Archaeoglobus veneficus species 58290 Archaeoglobus sulfaticallidus 0 1 261 1316941 species species 2234 211 1 0 Archaeoglobus fulgidus 0 Archaeoglobus profundus 1 300 84156 species clade 2283796 5751 24 0 183967 class 7 1 0 Thermoplasmata 5024 21 1234666 no rank 0 1 433 433 1 0 methanogenic archaeon ISO4-H5 species 1495144 14 2902 0 Thermoplasmatales order 12 1 2301 no rank 1919231 1 464 0 species 1054217 1 464 0 Thermoplasmatales archaeon BRNA1 90142 family 0 3 818 74968 4 1 genus 0 Ferroplasma 818 3 species 74969 1 402 Ferroplasma acidiphilum 0 412 1 0 Ferroplasma acidarmanus species 97393 family 46630 2 379 0 379 2 Picrophilus 0 genus 1 2 46631 Picrophilus torridus 0 377 1 82076 species 46659 family 1 2 Thermoplasmataceae 0 498 4 6 1 genus 2302 3 496 0 Thermoplasma 50339 species 0 Thermoplasma volcanium 261 1 2303 species 0 Thermoplasma acidophilum 1 229 family 1 7 1747776 731 3 Cuniculiplasmataceae 0 724 2 Cuniculiplasma 0 1 23 genus 1747777 0 Cuniculiplasma divulgatum 1 701 1673428 species order 1235850 1682 5 0 family 1 13 1577788 1281 4 Methanomassiliicoccaceae 0 genus 1607807 454 1 0 1577791 species Candidatus Methanoplasma termitum 0 1 454 1080709 genus 1 2 Methanomassiliicoccus 0 2 814 species 1406512 1 812 0 Candidatus Methanomassiliicoccus intestinalis family 2517203 401 1 0 401 1 0 genus 1291539 species 1291540 401 1 Candidatus Methanomethylophilus alvus 0 clade 1803510 727 3 0 Aciduliprofundum 0 727 3 379546 genus 1 13 2633939 no rank 0 1 305 1 305 Aciduliprofundum sp. MAR08-339 0 species 673860 1 409 0 Aciduliprofundum boonei species 379547 clade 2283794 45 20397 0 Methanobacteria 0 10263 26 183925 1 13 class Methanobacteriales 0 25 10250 2158 order 1 10 12 1 family 2159 9583 22 0 Methanobacteriaceae 5 695 0 Methanothermobacter genus 29 1 145260 145261 species Methanothermobacter wolfeii 0 1 142 species 145263 246 1 0 Methanothermobacter marburgensis 0 143 1 2631116 no rank 143 1 0 Methanothermobacter sp. CaT2 species 866790 135 1 0 Methanothermobacter thermautotrophicus species 145262 2316 genus 0 1 935 935 1 0 Methanosphaera stadtmanae species 2317 2172 genus 21 1 0 Methanobrevibacter 7 4965 species 294671 1082 1 0 Methanobrevibacter olleyae Methanobrevibacter millerae 0 912 1 230361 species 1 698 0 Methanobrevibacter ruminantium species 83816 1 962 0 Methanobrevibacter smithii species 2173 2638681 no rank 0 2 1290 Methanobrevibacter sp. AbM4 0 1 686 224719 species species 1609968 604 1 Methanobrevibacter sp. YE315 0 genus 53 1 2160 8 2976 0 Methanobacterium 643 1 Methanobacterium lacus 0 species 877455 1 466 Methanobacterium formicicum 0 species 2162 2627676 no rank 0 617 2 species 1911685 315 1 Methanobacterium sp. MZ-A1 0 Methanobacterium sp. MB1 0 302 1 1379702 species 868131 species Methanobacterium paludis 0 1 500 Methanobacterium subterraneum 0 1 312 59277 species 0 Methanobacterium congolense 1 385 118062 species family 2178 2 657 0 2 657 Methanothermus 0 genus 1 1 2179 1 656 Methanothermus fervidus 0 species 2180 0 Methanococci 19 10134 183939 4 1 class Methanococcales 0 10130 18 2182 order 1 15 Methanococcaceae 0 7 5613 2183 family 1 16 2184 genus 8 1 0 Methanococcus 5062 5 Methanococcus voltae 0 1 868 2188 species 39152 species Methanococcus maripaludis 0 2801 1 1 660 0 Methanococcus aeolicus species 42879 Methanococcus vannielii 0 1 725 2187 species genus 155862 1 535 0 0 Methanothermococcus okinawensis 535 1 155863 species Methanocaldococcaceae 0 10 4502 196117 family 1 11 1 48 genus 196118 7 3794 Methanocaldococcus 0 83171 species 0 Methanocaldococcus fervens 672 1 67760 species Methanocaldococcus infernus 0 1 485 73913 species 0 Methanocaldococcus vulcanius 1 577 2190 species Methanocaldococcus jannaschii 0 1 676 species 1301915 759 1 Methanocaldococcus bathoardescens 0 2641196 no rank 0 1 577 Methanocaldococcus sp. FS406-22 0 1 577 644281 species 196119 1 1 genus 0 Methanotorris 697 2 696 1 0 Methanotorris igneus species 2189 120 57892 0 clade 2290931 183963 class 125 1 0 Halobacteria 41076 67 0 Natrialbales 16343 20 1644060 133 1 order 1644061 family 1 74 Natrialbaceae 0 19 16210 genus 1269201 1 905 0 905 1 0 no rank 2621923 1333523 species Salinarchaeum sp. Harcht-Bsk1 0 905 1 genus 5 1 203193 2 1782 0 Halobiforma 1777 1 Halobiforma lacisalsi 0 species 229731 794 2 0 Natronobacterium 2 1 genus 2256 792 1 0 Natronobacterium gregoryi species 44930 353799 1 1 genus Halostagnicola 0 604 2 0 Halostagnicola larsenii 603 1 353800 species 0 Haloterrigena 2638 3 121871 genus 15 1 62320 species Haloterrigena turkmenica 0 1 1249 1374 1 Haloterrigena daqingensis 0 species 588898 1334 2 0 Halopiger genus 3 1 387342 1 1331 0 Halopiger xanaduensis species 387343 5295 2 Natrialba 0 genus 1 10 63742 species 13769 1 5285 Natrialba magadii 0 88723 genus 5 1 0 Natrinema 3 1638 69525 species 0 Natrinema pellirubrum 1 960 2622230 no rank 0 673 1 673 1 0 Natrinema sp. J7-2 species 406552 29287 genus 0 1 1146 species 29288 1 1146 0 Natronococcus occultus 0 Halobacteriales 28 9967 2235 order 68 1 0 Halobacteriaceae 11 3620 2236 14 1 family 1980514 1 4 genus Halodesulfurarchaeum 0 2 236 Halodesulfurarchaeum formicicum 0 1 232 1873524 species genus 22 1 2239 2432 4 0 Halobacterium 1 879 0 no rank 2668073 species 751944 1 879 Halobacterium sp. DL1 0 species 2242 624 1 0 Halobacterium salinarum species 1407499 907 1 Halobacterium hubeiense 0 2 632 0 Halalkalicoccus 6 1 genus 332246 413810 species Halalkalicoccus jeotgali 0 1 626 genus 1 2 1656823 2 306 Halanaeroarchaeum 0 species 1604004 304 1 Halanaeroarchaeum sulfurireducens 0 family 25 1 1963268 16 6279 0 Haloarculaceae 2237 genus 39 1 0 Haloarcula 2264 5 548 1 0 Haloarcula taiwanensis species 1932004 1 599 0 Haloarcula hispanica species 51589 1 570 0 no rank 2624677 570 1 0 Haloarcula sp. CBA1115 species 1592728 508 1 0 Haloarcula marismortui species 2238 63743 genus 1 17 Natronomonas 0 1307 3 416273 species Natronomonas moolapensis 0 696 1 2257 species Natronomonas pharaonis 0 594 1 genus 1 7 203135 2 850 Halomicrobium 0 1 843 Halomicrobium mukohataei 0 species 57705 1 10 genus 1073987 2 776 Halorientalis 0 766 1 0 no rank 2648975 1932360 species Halorientalis sp. IM1011 0 766 1 3 1057 Halorhabdus 0 genus 1 8 146825 430914 species 0 Halorhabdus tiamatea 1 524 Halorhabdus utahensis 0 1 525 146826 species Haloferacales 0 14641 18 1644055 order 1 138 Haloferacaceae 0 9258 9 1644056 1 29 family genus 1 6 60846 597 2 Halogeometricum 0 species 60847 1 591 Halogeometricum borinquense 0 0 Haloquadratum 2 4576 293431 3 1 genus species 293091 4573 1 0 Haloquadratum walsbyi genus 1 47 2251 4056 4 Haloferax 0 species 35746 1826 1 Haloferax gibbonsii 0 0 Haloferax mediterranei 1 714 2252 species 1 1469 Haloferax volcanii 0 species 2246 0 Halorubraceae 7 4513 1963271 21 1 family Salinigranum 0 1521 2 1644057 1 13 genus 1 1508 0 Salinigranum rubrum species 755307 1 860 0 genus 1209988 1 860 Halopenitus persicus 0 species 1048396 0 Halorubrum 2111 3 56688 genus 16 1 1204 1 Halorubrum trapanicum 0 species 29284 1 891 Halorubrum lacusprofundi 0 species 2247 no rank 2678336 1 732 0 species 756883 1 732 halophilic archaeon DL31 0 Methanomicrobia 0 16816 53 224756 class 1 22 0 Methanomicrobiales 19 3354 2191 order 21 1 1198451 22 1 family 0 Methanoregulaceae 6 1012 3 573 Methanoregula 0 genus 1 20 395331 274 1 Methanoregula boonei 0 species 358766 species 882104 1 279 Methanoregula formicica 0 1 6 genus 475087 417 2 Methanosphaerula 0 Methanosphaerula palustris 0 411 1 475088 species 196137 family 1 3 Methanospirillaceae 0 404 3 0 Methanospirillum 401 2 2202 25 1 genus species 2203 1 376 Methanospirillum hungatei 0 2 233 0 family 88404 233 2 0 Methanocorpusculum genus 12 1 2192 1 221 0 Methanocorpusculum labreanum species 83984 0 Methanomicrobiaceae 1684 7 2194 19 1 family 303 2 0 Methanolacinia genus 12 1 230355 0 Methanolacinia petrolearia 1 291 54120 species 0 Methanoculleus 4 1362 45989 28 1 genus 0 Methanoculleus marisnigri 493 1 2198 species 367 1 0 no rank 2619537 Methanoculleus sp. MAB1 0 367 1 86622 species species 83986 474 1 0 Methanoculleus bourgensis 570264 order 1 4 Methanocellales 0 897 5 0 Methanocellaceae 4 893 570265 2 1 family 891 3 0 Methanocella genus 37 1 570266 species 1175445 1 555 Methanocella arvoryzae 0 1 299 0 Methanocella conradii species 1175444 12543 28 Methanosarcinales 0 1 34 order 94695 11428 23 Methanosarcinaceae 0 family 1 25 2206 2225 genus 0 722 2 0 Methanococcoides methylutens 1 397 2226 species 0 Methanococcoides burtonii 325 1 29291 species 0 574 1 2321 genus 2322 species Methanohalobium evestigatum 0 1 574 2220 genus 0 1 261 species 420950 261 1 0 Methanolobus psychrophilus Methanomethylovorans 0 2 327 101191 1 12 genus 0 Methanomethylovorans hollandica 315 1 101192 species 2207 genus 1 26 Methanosarcina 0 8391 13 2209 species 0 Methanosarcina mazei 1 806 0 Methanosarcina thermophila 1 502 2210 species 1 464 Methanosarcina horonobensis 0 species 418008 species 2215 1 692 Methanosarcina vacuolata 0 0 Methanosarcina lacustris 1 634 170861 species 2644672 no rank 0 4 2097 0 Methanosarcina sp. Kolksee 619 1 1434099 species 1434103 species Methanosarcina sp. WWM596 0 378 1 1434100 species Methanosarcina sp. MTP4 0 755 1 345 1 0 Methanosarcina sp. WH1 species 1434102 38027 species Methanosarcina siciliae 0 769 1 2214 species Methanosarcina acetivorans 0 1 518 Methanosarcina barkeri 0 1 1883 2208 species 2 672 0 genus 2175 Methanohalophilus halophilus 0 1 340 2177 species Methanohalophilus mahii 0 332 1 2176 species 0 456 1 196136 genus 1 456 0 Methanosalsum zhilinae species 39669 1081 4 Methanosaetaceae 0 1 3 family 143067 3 1078 Methanothrix 0 genus 1 21 2222 Methanosaeta harundinacea 0 1 624 301375 species species 2223 433 1 Methanothrix soehngenii 0 183968 2 1 class 0 Thermococci 41 6225 Thermococcales 0 6223 40 2258 order 1 9 39 6214 0 Thermococcaceae family 9 1 2259 83867 genus 0 1 243 243 1 0 Palaeococcus pacificus species 971279 Thermococcus 0 29 4760 2263 genus 1 74 1712654 species Thermococcus piezophilus 0 1 95 248 1 Thermococcus litoralis 0 species 2265 1 116 Thermococcus pacificus 0 species 71998 Thermococcus siculi 0 420 1 72803 species 172049 species 0 Thermococcus sibiricus 288 1 53952 species Thermococcus peptonophilus 0 1 93 1 93 0 Thermococcus onnurineus species 342948 species 110164 111 1 Thermococcus guaymasensis 0 species 55802 1 341 Thermococcus barophilus 0 187880 species Thermococcus radiotolerans 0 1 202 187878 species Thermococcus gammatolerans 0 1 124 1 123 Thermococcus kodakarensis 0 species 311400 Thermococcus eurythermalis 0 123 1 1505907 species species 49899 1 102 0 Thermococcus profundus species 163003 135 1 Thermococcus cleftensis 0 species 54077 142 1 0 Thermococcus barossii no rank 2627626 6 876 0 197 1 0 Thermococcus sp. 2319x1 species 1674923 species 1042877 1 188 Thermococcus sp. 4557 0 Thermococcus sp. 5-4 0 140 1 2008440 species 1 57 Thermococcus sp. P6 0 species 122420 0 Thermococcus sp. AM4 156 1 246969 species 1 138 Thermococcus sp. EXT12c 0 species 2016361 species 71997 1 105 Thermococcus gorgonarius 0 1 156 Thermococcus celer 0 species 2264 species 195522 127 1 0 Thermococcus nautili 337 1 0 Thermococcus paralvinellae species 582419 Thermococcus thioreducens 0 1 132 277988 species 197 1 Thermococcus chitonophagus 0 species 54262 22 1 genus 2260 1202 8 0 Pyrococcus species 1008460 97 1 0 Pyrococcus yayanosii 2261 species 0 Pyrococcus furiosus 1 240 Pyrococcus horikoshii 0 1 175 53953 species 29292 species 0 Pyrococcus abyssi 111 1 1 159 Pyrococcus kukulkanii 0 species 1609559 no rank 2629106 2 398 0 species 342949 185 1 0 Pyrococcus sp. NA2 1183377 species Pyrococcus sp. ST04 0 1 213 clade 1783276 1 82 0 1 82 0 phylum 1801631 0 82 1 2490204 genus species 1920749 82 1 Candidatus Micrarchaeota archaeon Mia14 0 1 0 name 0