members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 29 4711 12715 2942205 277 2157 0 superkingdom 36728 phylum 27444 224 1 1 Euryarchaeota 28890 0 39 183968 0 class 1842 1842 order 2258 1 Thermococcales 39 1 0 38 2259 0 family 1841 0 83867 1 73 genus 0 Palaeococcus pacificus 971279 1 73 species 1236 genus Thermococcus 1 2263 29 10 0 15 species 0 342948 Thermococcus onnurineus 1 31 species 0 Thermococcus profundus 49899 1 0 1 110164 Thermococcus guaymasensis species 31 Thermococcus paralvinellae 582419 1 0 128 species 0 Thermococcus siculi 72803 1 42 species 42 species 0 311400 Thermococcus kodakarensis 1 species 26 1 Thermococcus cleftensis 163003 0 31 species 0 277988 Thermococcus thioreducens 1 0 187880 Thermococcus radiotolerans 1 29 species 30 species 0 Thermococcus gammatolerans 187878 1 1 54262 Thermococcus chitonophagus 0 species 60 71998 Thermococcus pacificus 1 0 31 species 0 1 2265 Thermococcus litoralis species 59 0 1 172049 Thermococcus sibiricus species 109 48 species 0 54077 Thermococcus barossii 1 species 106 1 Thermococcus barophilus 55802 0 30 species 0 1505907 Thermococcus eurythermalis 1 1 195522 Thermococcus nautili 0 species 22 0 1 53952 Thermococcus peptonophilus species 25 35 species Thermococcus gorgonarius 71997 1 0 40 species 0 1712654 Thermococcus piezophilus 1 62 species 0 Thermococcus celer 2264 1 194 no rank 2627626 6 0 36 species 2016361 Thermococcus sp. EXT12c 1 0 122420 Thermococcus sp. P6 1 0 18 species 0 1 Thermococcus sp. 2319x1 1674923 species 52 246969 Thermococcus sp. AM4 1 0 39 species species 25 0 1 Thermococcus sp. 4557 1042877 24 species 0 2008440 Thermococcus sp. 5-4 1 2 8 Pyrococcus 2260 1 0 genus 532 140 species 0 Pyrococcus furiosus 2261 1 2629106 2 0 148 no rank species 67 1 Pyrococcus sp. NA2 342949 0 species 81 0 1 1183377 Pyrococcus sp. ST04 1008460 Pyrococcus yayanosii 1 0 35 species species 38 1 29292 Pyrococcus abyssi 0 0 1 53953 Pyrococcus horikoshii species 89 80 species Pyrococcus kukulkanii 1609559 1 0 20 2283796 0 clade 1480 214 clade 1803510 2 0 genus 214 0 2 379546 0 1 2633939 no rank 73 73 species 0 Aciduliprofundum sp. MAR08-339 673860 1 1 379547 Aciduliprofundum boonei 0 species 141 183967 18 0 1266 class 12 1 1 2301 Thermoplasmatales 0 order 826 family 117 0 3 46659 3 1 1 2302 Thermoplasma 0 genus 117 43 species Thermoplasma acidophilum 2303 1 0 0 1 50339 Thermoplasma volcanium species 73 90142 2 0 291 family 0 74968 2 291 genus species 150 0 1 74969 Ferroplasma acidiphilum Ferroplasma acidarmanus 97393 1 0 141 species 46630 2 0 139 family 139 genus Picrophilus 46631 1 2 3 0 species 136 1 Picrophilus torridus 82076 0 0 1 Cuniculiplasmataceae 1747776 9 3 190 family 181 genus 0 1747777 1 Cuniculiplasma 15 2 0 1673428 Cuniculiplasma divulgatum 1 166 species 0 1919231 1 88 no rank 0 1 Thermoplasmatales archaeon BRNA1 1054217 species 88 1 1234666 0 no rank 101 101 species 0 1495144 methanogenic archaeon ISO4-H5 1 5 1235850 0 order 339 268 family 1 1577788 Methanomassiliicoccaceae 4 5 0 89 genus 0 1607807 1 species 89 1 1577791 Candidatus Methanoplasma termitum 0 174 genus 1 Methanomassiliicoccus 1080709 2 2 0 0 1406512 Candidatus Methanomassiliicoccus intestinalis 1 172 species 71 family 0 2517203 1 1291539 1 0 71 genus 0 1291540 Candidatus Methanomethylophilus alvus 1 71 species class 532 10 183980 0 0 Archaeoglobales 2231 1 1 10 532 order 1 2232 Archaeoglobaceae 3 9 0 531 family 71 genus 0 54260 1 Ferroglobus placidus 54261 1 0 71 species 190818 2 0 98 genus Geoglobus acetivorans 565033 1 0 44 species species 54 1 Geoglobus ahangari 113653 0 5 3 1 Archaeoglobus 2233 0 genus 359 species 77 0 1 Archaeoglobus veneficus 58290 species 105 0 1 1316941 Archaeoglobus sulfaticallidus 0 84156 Archaeoglobus profundus 1 80 species species 94 1 2234 Archaeoglobus fulgidus 0 8959 clade 2283794 44 0 27 4 1 Methanobacteria 183925 0 class 4601 4597 order 0 2158 Methanobacteriales 1 8 26 0 Methanothermaceae 2178 1 1 3 283 family 0 2 2 Methanothermus 2179 1 genus 282 species 280 1 2180 Methanothermus fervidus 0 4306 family 0 2159 Methanobacteriaceae 1 11 22 2323 genus 0 2172 Methanobrevibacter 1 7 9 species 242 1 83816 Methanobrevibacter ruminantium 0 0 2 2638681 no rank 668 345 species 224719 Methanobrevibacter sp. AbM4 1 0 0 1609968 Methanobrevibacter sp. YE315 1 323 species 387 species 230361 Methanobrevibacter millerae 1 0 Methanobrevibacter olleyae 294671 1 0 571 species 0 1 Methanobrevibacter smithii 2173 species 446 8 11 2160 Methanobacterium 1 0 genus 1286 no rank 273 0 2 2627676 0 1911685 Methanobacterium sp. MZ-A1 1 142 species 1379702 Methanobacterium sp. MB1 1 0 131 species species 217 1 868131 Methanobacterium paludis 0 Methanobacterium congolense 118062 1 0 209 species 0 1 Methanobacterium subterraneum 59277 species 174 Methanobacterium formicicum 2162 1 0 157 species 0 877455 Methanobacterium lacus 1 245 species genus 488 1 2316 0 488 species 2317 Methanosphaera stadtmanae 1 0 1 Methanothermobacter 145260 5 18 0 198 genus 1 Methanothermobacter thermautotrophicus 145262 0 species 31 66 species Methanothermobacter marburgensis 145263 1 0 47 no rank 2631116 1 0 species 47 0 1 866790 Methanothermobacter sp. CaT2 36 species 0 Methanothermobacter wolfeii 145261 1 class 4358 0 17 1 183939 1 Methanococci 1 Methanococcales 2182 3 16 0 4357 order 3 6 1 2183 Methanococcaceae 0 family 2334 231 genus 155862 1 0 231 species Methanothermococcus okinawensis 155863 1 0 0 4 2184 genus 2100 365 species 0 Methanococcus voltae 2188 1 0 1 39152 Methanococcus maripaludis species 1189 species 262 1 2187 Methanococcus vannielii 0 284 species 0 Methanococcus aeolicus 42879 1 family 2020 9 5 1 196117 Methanocaldococcaceae 0 196118 1 Methanocaldococcus 7 11 0 1810 genus species 397 1 1301915 Methanocaldococcus bathoardescens 0 species 232 1 73913 Methanocaldococcus vulcanius 0 species 319 0 1 2190 Methanocaldococcus jannaschii 0 83171 Methanocaldococcus fervens 1 290 species 0 1 Methanocaldococcus infernus 67760 species 235 0 1 2641196 no rank 326 0 1 644281 Methanocaldococcus sp. FS406-22 species 326 205 genus 0 196119 1 0 1 Methanotorris igneus 2189 species 205 clade 14630 0 110 2290931 4952 class 0 1 224756 Methanomicrobia 51 6 94695 1 Methanosarcinales 14 28 0 3884 order 3647 family 0 1 Methanosarcinaceae 2206 19 24 0 101191 1 Methanomethylovorans 7 2 106 genus species 99 0 1 101192 Methanomethylovorans hollandica 261 genus 2175 2 0 species 120 1 2177 Methanohalophilus halophilus 0 2176 Methanohalophilus mahii 1 0 141 species Methanococcoides 2225 1 2 3 0 314 genus 29291 Methanococcoides burtonii 1 0 150 species 0 Methanococcoides methylutens 2226 1 162 species genus 2449 0 14 13 1 Methanosarcina 2207 1 2209 Methanosarcina mazei 0 species 289 418008 Methanosarcina horonobensis 1 0 204 species 514 no rank 0 2644672 4 0 1434102 Methanosarcina sp. WH1 1 113 species species 114 0 1 Methanosarcina sp. WWM596 1434103 0 Methanosarcina sp. MTP4 1434100 1 119 species 0 1 Methanosarcina sp. Kolksee 1434099 species 168 species 155 1 Methanosarcina lacustris 170861 0 species 142 1 2210 Methanosarcina thermophila 0 2214 Methanosarcina acetivorans 1 0 140 species species 169 0 1 2215 Methanosarcina vacuolata 0 2208 Methanosarcina barkeri 1 630 species 0 1 Methanosarcina siciliae 38027 species 192 0 196136 1 150 genus 1 Methanosalsum zhilinae 39669 0 species 150 0 2220 1 99 genus species 99 1 Methanolobus psychrophilus 420950 0 249 genus 2321 1 0 Methanohalobium evestigatum 2322 1 0 249 species 0 143067 3 223 family 3 5 1 Methanothrix 2222 0 genus 223 0 1 301375 Methanosaeta harundinacea species 144 species 74 1 2223 Methanothrix soehngenii 0 1 Methanocellales 570264 2 4 0 216 order 214 family 570265 3 0 214 genus 570266 Methanocella 1 3 8 0 86 species 1175444 Methanocella conradii 1 0 species 120 1 Methanocella arvoryzae 1175445 0 846 order Methanomicrobiales 1 2191 14 18 0 58 family 88404 2 0 0 Methanocorpusculum 1 2192 2 7 58 genus 0 Methanocorpusculum labreanum 83984 1 51 species family 103 0 2 196137 genus 103 0 13 2 Methanospirillum 2202 1 0 1 Methanospirillum hungatei 2203 species 90 400 family Methanomicrobiaceae 1 2194 10 7 0 genus 94 0 5 2 1 230355 Methanolacinia species 89 0 1 Methanolacinia petrolearia 54120 genus 296 4 9 45989 1 Methanoculleus 0 113 species Methanoculleus bourgensis 83986 1 0 0 2619537 1 72 no rank 0 Methanoculleus sp. MAB1 86622 1 72 species 0 2198 Methanoculleus marisnigri 1 102 species 271 family 0 1 Methanoregulaceae 1198451 6 15 genus 163 2 3 Methanoregula 1 395331 0 0 1 Methanoregula boonei 358766 species 61 100 species 0 882104 Methanoregula formicica 1 genus 93 3 2 475087 Methanosphaerula 1 0 0 475088 Methanosphaerula palustris 1 90 species 1 183963 Halobacteria 59 35 0 9678 class 27 18 1644055 1 Haloferacales 0 order 3331 1203 family 0 1963271 1 Halorubraceae 3 7 0 1209988 1 252 genus 0 1 Halopenitus persicus 1048396 species 252 416 genus 1644057 1 Salinigranum 2 2 0 414 species 0 755307 Salinigranum rubrum 1 genus 532 0 3 3 56688 1 Halorubrum 304 species 0 29284 Halorubrum trapanicum 1 225 species Halorubrum lacusprofundi 2247 1 0 172 no rank 0 2678336 1 0 1 756883 halophilic archaeon DL31 species 172 1 Haloferacaceae 1644056 9 20 0 1929 family 0 2 3 1 Haloquadratum 293431 genus 692 Haloquadratum walsbyi 293091 1 0 689 species 1 2251 Haloferax 12 4 0 1024 genus species 403 1 35746 Haloferax gibbonsii 0 426 species Haloferax volcanii 2246 1 0 0 Haloferax mediterranei 2252 1 183 species 193 genus 60846 1 Halogeometricum 2 2 0 species 191 0 1 Halogeometricum borinquense 60847 2647 order 1 2235 Halobacteriales 13 25 0 family 1084 0 10 2236 genus 706 0 5 4 Halobacterium 2239 1 Halobacterium salinarum 2242 1 0 177 species 1 2668073 0 no rank 230 species 230 1 751944 Halobacterium sp. DL1 0 species 294 0 1 1407499 Halobacterium hubeiense genus 177 0 2 2 332246 1 Halalkalicoccus 0 413810 Halalkalicoccus jeotgali 1 175 species 88 genus 0 1980514 1 Halodesulfurarchaeum 2 2 species 86 0 1 1873524 Halodesulfurarchaeum formicicum 0 1656823 1 Halanaeroarchaeum 2 8 113 genus 105 species 1604004 Halanaeroarchaeum sulfurireducens 1 0 family 1550 14 5 Haloarculaceae 1 1963268 0 genus 561 11 5 1 2237 Haloarcula 0 species 138 1 51589 Haloarcula hispanica 0 0 1 2624677 no rank 126 0 1 1592728 Haloarcula sp. CBA1115 species 126 Haloarcula marismortui 2238 1 0 144 species 1 1932004 Haloarcula taiwanensis 0 species 142 0 146825 2 246 genus 119 species 430914 Halorhabdus tiamatea 1 0 127 species 146826 Halorhabdus utahensis 1 0 0 1 1073987 genus 245 0 1 2648975 no rank 245 species 245 1 Halorientalis sp. IM1011 1932360 0 273 genus Natronomonas 1 63743 3 7 0 species 96 1 Natronomonas pharaonis 2257 0 species 170 0 1 Natronomonas moolapensis 416273 1 203135 Halomicrobium 1 2 0 220 genus 219 species 57705 Halomicrobium mukohataei 1 0 3665 order 1644060 1 Natrialbales 15 33 0 3632 family 1644061 1 Natrialbaceae 23 14 0 1 2 203193 Halobiforma 1 0 genus 515 514 species 229731 Halobiforma lacisalsi 1 0 0 121871 2 438 genus species 267 1 62320 Haloterrigena turkmenica 0 0 1 588898 Haloterrigena daqingensis species 171 genus 179 1 2256 0 0 1 Natronobacterium gregoryi 44930 species 179 genus 493 2 88723 0 1 2622230 0 no rank 172 406552 Natrinema sp. J7-2 1 0 172 species 321 species 0 Natrinema pellirubrum 69525 1 genus 164 0 1 353799 species 164 0 1 353800 Halostagnicola larsenii 0 29287 1 219 genus 219 species Natronococcus occultus 29288 1 0 951 genus 63742 1 0 species 951 0 1 13769 Natrialba magadii 0 387342 1 484 genus 484 species 0 Halopiger xanaduensis 387343 1 genus 166 1 2 1269201 1 Salinarchaeum 0 no rank 165 1 2621923 0 species 165 1 1333523 Salinarchaeum sp. Harcht-Bsk1 0 71 clade 0 1783276 1 1801631 1 0 71 phylum genus 71 0 1 2490204 0 1920749 Candidatus Micrarchaeota archaeon Mia14 1 71 species clade 9213 0 52 1783275 28889 38 0 2841 phylum class 2841 3 38 183924 1 Thermoprotei 0 order 1645 1 9 1 2281 Sulfolobales 0 8 118883 0 family 1644 genus 404 0 1 69655 Sulfolobus tokodaii 111955 1 0 404 species 0 41980 2 150 genus 33 species Metallosphaera sedula 43687 1 0 0 Metallosphaera cuprina 1006005 1 117 species genus 160 1 12914 0 160 species 563177 Acidianus hospitalis 1 0 686 genus 2284 3 0 1 2641160 0 no rank 221 221 species 1891280 Sulfolobus sp. A20 1 0 43080 Sulfolobus islandicus 1 0 302 species species 163 1 Sulfolobus acidocaldarius 2285 0 244 genus 2100760 1 0 0 2287 Sulfolobus solfataricus 1 244 species 319 order 871006 3 0 0 1 871007 family 24 0 105850 1 24 genus 0 Acidilobus saccharovorans 242703 1 24 species 295 family 1 255472 Caldisphaeraceae 2 6 0 0 200414 1 289 genus 289 species Caldisphaera lagunensis 200415 1 0 411 order 0 Desulfurococcales 1 114380 1 13 85 family 2307 4 0 genus 20 1 54247 0 species 20 1 Hyperthermus butylicus 54248 0 genus 35 1 2 Pyrodictium 2308 1 0 0 1273541 Pyrodictium delaneyi 1 34 species 0 1 54251 genus 30 1 Pyrolobus fumarii 54252 0 species 30 325 family 2272 8 0 2 54258 0 genus 55 species 37 1 160233 Ignicoccus hospitalis 0 Ignicoccus islandicus 54259 1 0 18 species genus 15 1 54253 0 15 species 0 54254 Thermosphaera aggregans 1 185 genus 2279 2 0 0 1 Staphylothermus hellenicus 84599 species 88 Staphylothermus marinus 2280 1 0 97 species 2 2273 0 genus 45 0 2275 Desulfurococcus mucosus 1 7 species 1 Desulfurococcus amylolyticus 94694 0 species 38 genus 25 1 477695 0 1 Thermogladius calderae 1200300 0 species 25 463 order 0 2266 Thermoproteales 1 12 1 0 2267 6 328 family genus 82 1 76886 0 0 1 Caldivirga maquilingensis 76887 species 82 71 genus 2270 2 0 0 1 Thermoproteus tenax 2271 species 29 1 184117 Thermoproteus uzoniensis 0 species 42 142 genus 164450 2 0 70 species 0 164451 Vulcanisaeta distributa 1 1 985052 Vulcanisaeta moutnovskia 0 species 72 genus 33 1 2276 0 0 2277 Pyrobaculum islandicum 1 33 species 134 family 0 114378 5 134 genus 0 Thermofilum 2268 1 1 5 0 1 2269 Thermofilum pendens species 28 1 Thermofilum uzonense 1550241 0 species 41 species 29 0 1 1365176 Thermofilum adornatus 0 1483572 Thermofilum carboxyditrophus 1 35 species 0 51967 1 33 phylum 498845 1 0 33 genus species 33 0 1 498846 Candidatus Korarchaeum cryptofilum 6339 phylum 0 651137 13 0 4 651142 no rank 803 genus 580 0 1 2 Candidatus Nitrosopelagicus 1 1593364 579 species 1410606 Candidatus Nitrosopelagicus brevis 1 0 223 genus 1825023 2 0 species 83 0 1 Candidatus Nitrosotenuis sp. AQ6f 1846278 140 species 0 Candidatus Nitrosotenuis cloacae 1603555 1 2 1643678 0 class 339 1033996 1 0 135 order 135 family 0 1033997 1 135 genus 0 497726 1 135 species Nitrososphaera viennensis 1034015 1 0 1968909 1 0 204 order 1 1968910 0 family 204 498374 1 0 204 genus Candidatus Nitrosocaldus islandicus 2045011 1 0 204 species 5197 order 0 31932 Nitrosopumilales 1 7 11 0 6 3 Nitrosopumilaceae 338190 1 family 5186 0 Nitrosopumilus 338191 1 2 3 1983 genus 0 1 Candidatus Nitrosopumilus sediminis 1229909 species 1072 species 909 1 1580092 Candidatus Nitrosopumilus adriaticus 0 0 2 1 1993653 1 Candidatus Nitrosomarinus genus 3200 1898749 Candidatus Nitrosomarinus catalina 1 0 3199 species 0 0 name 1 53 4404 Bacteria 2 1 0 superkingdom 2892762 3 2323 0 no rank 596 596 clade 0 1783234 3 clade 532 0 2 95901 class 532 0 2 2497643 2 2497644 0 order 532 2 2497645 0 family 532 532 genus 1551504 1 Candidatus Babela 2 13 0 species 519 1 673862 Candidatus Babela massiliensis 0 95818 1 0 64 phylum 0 1895827 1 64 no rank 0 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 species 64 0 200783 27 5246 phylum 5246 class 1 187857 Aquificae 27 25 0 1485951 1 Desulfurobacteriales 5 6 0 835 order family 829 0 4 3 1 558314 Desulfurobacteriaceae genus 760 2 5 Desulfurobacterium 1 64159 0 0 64160 Desulfurobacterium thermolithotrophum 1 755 species 66 genus 171868 1 0 species 66 1 Thermovibrio ammonificans 228745 0 order 4386 0 9 21 1 32069 Aquificales 13 5 1 Aquificaceae 64898 0 family 2046 210 genus 0 Thermocrinis 1 75905 2 3 species 87 0 1 136094 Thermocrinis albus 0 1 75906 Thermocrinis ruber species 121 0 939 1 186 genus 940 Hydrogenobacter thermophilus 1 0 186 species 0 6 37 168657 1 Hydrogenobaculum genus 1557 0 2622382 5 1520 no rank 309 species Hydrogenobaculum sp. SN 547146 1 0 species 309 1 547145 Hydrogenobaculum sp. SHO 0 309 species 0 547143 Hydrogenobaculum sp. 3684 1 380749 Hydrogenobaculum sp. Y04AAS1 1 0 284 species species 309 1 547144 Hydrogenobaculum sp. HO 0 88 genus 0 2713 Aquifex 1 2 2 0 1 63363 Aquifex aeolicus species 86 221 no rank 0 90150 2 genus 221 1 2 412592 Thermosulfidibacter 1 0 species 220 1 Thermosulfidibacter takaii 412593 0 family 2110 0 5 2 Hydrogenothermaceae 1 224027 494 genus 182899 1 0 494 species 309805 Persephonella marina 1 0 genus 1614 10 3 1 Sulfurihydrogenibium 212790 0 1 2619248 0 no rank 897 Sulfurihydrogenibium sp. YO3AOP1 436114 1 0 897 species 309806 Sulfurihydrogenibium azorense 1 0 707 species phylum 401 0 3 1930617 0 1 3 1 Calditrichae 1962850 class 401 400 order 0 1962852 2 1962854 2 0 400 family 400 genus 0 1 187144 Caldithrix 4 2 species 396 0 1 Caldithrix abyssi 187145 1783272 1657 0 711299 clade clade 196677 0 156 1798711 phylum 196677 0 156 30 1 Cyanobacteria 1117 no rank 563 1 1983111 0 0 1 718217 cyanobacterium endosymbiont of Epithemia turgida species 563 1161 Nostocales 1 33 59 0 18829 order family 838 0 2 1892263 genus 838 2 5 1 1190 Fischerella 0 no rank 833 0 1 494603 species 833 1 1752063 Fischerella sp. NIES-3754 0 566 no rank 0 1219117 1 566 species 0 1940762 Nostocales cyanobacterium HT-58-2 1 1 Rivulariaceae 1185 25 3 0 1340 family genus 1315 0 2 8 373984 1 Rivularia 1307 no rank 2676603 1 0 1 373994 Rivularia sp. PCC 7116 0 species 1307 0 35 18 1162 1 Nostocaceae family 10271 0 4 27 1 Anabaena 1163 genus 2463 775 species 0 1165 Anabaena cylindrica 1 1661 no rank 0 2619674 2 791 species 0 Anabaena sp. WA102 1647413 1 1 46234 Anabaena sp. 90 0 species 870 0 10 3 1 264688 Trichormus genus 1447 725 species 1164 Trichormus azollae 1 0 0 264691 Trichormus variabilis 1 712 species genus 6326 82 10 Nostoc 1177 1 0 no rank 4947 7 2593658 0 Nostoc sp. PCC 7524 28072 1 0 562 species species 674 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 0 1869241 Nostoc sp. CENA543 1 0 1090 species 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 0 species 669 677 species 0 Nostoc sp. NIES-3756 1751286 1 1 103690 Nostoc sp. PCC 7120 0 species 689 0 1 317936 Nostoc sp. PCC 7107 species 586 species 649 1 Nostoc punctiforme 272131 0 0 1 1306274 Nostoc flagelliforme species 648 5755 family 0 2661849 8 genus 5755 8 56 1186 Calothrix 1 0 species 854 0 1 Calothrix parietina 32054 4845 no rank 2619626 6 0 species 794 1 1954171 Calothrix sp. NIES-2098 0 species 619 0 1 99598 Calothrix sp. PCC 7507 1235 species 0 Calothrix sp. NIES-4071 2005469 1 663 species Calothrix sp. 336/3 1337936 1 0 0 Calothrix sp. NIES-3974 2005462 1 579 species 955 species 0 2005461 Calothrix sp. NIES-4101 1 1301283 47 0 17764 subclass 0 1118 1 Chroococcales 40 26 12231 order 1015 family 0 1 Cyanobacteriaceae 1890452 5 3 5 2 102234 Cyanobacterium 1 0 genus 1010 species 1005 0 1 Cyanobacterium aponinum 379064 0 1 Microcystaceae 1890449 25 4 2063 family 3 17 1 1125 Microcystis 0 genus 2038 1 Microcystis aeruginosa 1126 0 species 1414 1 2643300 0 no rank 607 1 Microcystis sp. MC19 1967666 0 species 607 0 8 49 Chroococcaceae 1 1890464 family 4696 0 12 2 1 Gloeocapsa 102231 genus 1219 1207 no rank 0 2623012 1 0 1 1173026 Gloeocapsa sp. PCC 7428 species 1207 16 3 Geminocystis 669357 1 0 genus 2264 2 2625037 0 no rank 2248 1213 species 0 Geminocystis sp. NIES-3708 1615909 1 species 1035 0 1 Geminocystis sp. NIES-3709 1617448 1164 genus 0 268175 Chondrocystis 1 2 2 1162 no rank 0 2648896 1 species 1162 1 2005460 Chondrocystis sp. NIES-4102 0 family 4417 10 21 1 Aphanothecaceae 1890450 0 1418 genus 0 28070 2 species 710 0 1 2546356 Cyanothece sp. PCC 7424 65393 1 0 710 strain 0 1 2546359 species 708 strain 708 1 497965 Cyanothece sp. PCC 7822 0 0 2 3 1 Candidatus Atelocyanobacterium 1453359 genus 785 0 713887 Candidatus Atelocyanobacterium thalassa 1 782 species 525 no rank 92682 2 0 0 1 Halothece 76023 2 2 525 genus 0 1 2632878 no rank 523 species 523 1 Halothece sp. PCC 7418 65093 0 0 263510 1 735 genus 0 1 2546360 species 735 Cyanothece sp. ATCC 51142 43989 1 0 735 strain 2546365 2 0 933 genus 933 species 0 2546366 2 1 41431 Cyanothece sp. PCC 8801 0 strain 459 strain 474 1 Cyanothece sp. PCC 8802 395962 0 0 Oscillatoriales 1 1150 78 21 5533 order family 1712 22 5 1892252 1 Microcoleaceae 0 genus 344 2 3 44471 Microcoleus 1 0 341 no rank 2642155 1 0 species 341 1 Microcoleus sp. PCC 7113 1173027 0 1346 genus 0 1205 Trichodesmium 1 4 2 1342 species 0 1206 Trichodesmium erythraeum 1 3 50 1 1892249 Cyanothecaceae 0 family 399 0 2 44 1 43988 Cyanothece genus 349 0 1 2649277 no rank 305 0 Cyanothece sp. PCC 7425 395961 1 305 species 0 3 3 1 Gomontiellaceae 1892255 family 710 1 241421 Crinalium 2 3 0 707 genus 704 species 241425 Crinalium epipsammum 1 0 53 6 1 Oscillatoriaceae 1892254 0 family 2366 genus 1146 7 2 Moorea 1155738 1 0 1 1155739 Moorea producens 0 species 1139 0 1 Oscillatoria 1158 10 3 1167 genus species 705 1 Oscillatoria nigro-viridis 482564 0 1 118323 Oscillatoria acuminata 0 species 452 0 9 3 1892251 1 Coleofasciculaceae family 268 259 genus 0 1 63132 Geitlerinema 2 9 2648775 1 0 250 no rank 0 1 Geitlerinema sp. PCC 7407 1173025 species 250 0 57 169 1 Synechococcales 1890424 order 155456 0 2303730 2 499 family 499 genus 0 Halomicronema 1 170610 11 2 488 species 0 Halomicronema hongdechloris 1209493 1 1 Pseudanabaenaceae 1890436 3 2 0 637 family 1 1152 Pseudanabaena 2 2 0 635 genus 2593292 1 0 633 no rank 633 species 0 Pseudanabaena sp. PCC 7367 82654 1 1 1213 Prochloraceae 10 5 0 19069 family genus 19059 0 4 38 Prochlorococcus 1218 1 4362 no rank 2627481 2 0 1501268 Prochlorococcus sp. MIT 0604 1 0 2572 species 1790 species 1501269 Prochlorococcus sp. MIT 0801 1 0 14659 species Prochlorococcus marinus 1219 1 0 0 Leptolyngbyaceae 1 1890438 6 17 1759 family 0 20 5 Leptolyngbya 1 47251 genus 1742 3 2650499 0 no rank 1285 593 species 0 Leptolyngbya sp. PCC 7376 111781 1 species 382 0 1 1752064 Leptolyngbya sp. NIES-3755 species 310 0 1 Leptolyngbya sp. O-77 1080068 437 species Leptolyngbya boryana 1184 1 0 0 49 33 1 1890426 Synechococcaceae family 131800 1 13034 0 genus 537 1 Dactylococcopsis salina 292566 0 species 537 Thermosynechococcus 146785 1 1 2 0 198 genus 0 1 Thermosynechococcus elongatus 146786 species 197 0 1129 Synechococcus 1 26 652 129314 genus 271 species Synechococcus elongatus 32046 1 0 0 33070 Synechococcus lividus 1 199 species 128192 no rank 0 2626047 23 1 Synechococcus sp. PCC 7003 374981 0 species 240 species 299 1 1350461 Synechococcus sp. UTEX 2973 0 0 Synechococcus sp. WH 8102 84588 1 1930 species 1916956 Synechococcus sp. SynAce01 1 0 765 species species 291 1 Synechococcus sp. JA-2-3B'a(2-13) 321332 0 316279 Synechococcus sp. CC9902 1 0 37808 species 32051 Synechococcus sp. WH 7803 1 0 1948 species 0 Synechococcus sp. PCC 7117 195498 1 235 species 0 1 Synechococcus sp. WH 8109 166314 species 1773 0 1 195253 Synechococcus sp. PCC 6312 species 372 Synechococcus sp. RCC307 316278 1 0 1053 species 0 1 Synechococcus sp. PCC 7002 32049 species 195 29410 Synechococcus sp. WH 8103 1 0 1898 species 1420 species 0 Synechococcus sp. KORDI-100 1280380 1 0 Synechococcus sp. JA-3-3Ab 321327 1 260 species 215 species 195248 Synechococcus sp. PCC 8807 1 0 1 Synechococcus sp. KORDI-49 585423 0 species 1547 0 585425 Synechococcus sp. KORDI-52 1 1882 species 1 1173263 Synechococcus sp. PCC 7502 0 species 664 species 1919 1 Synechococcus sp. CC9605 110662 0 species 300 1 Synechococcus sp. NIES-970 1827144 0 70906 species 0 64471 Synechococcus sp. CC9311 1 Synechococcus sp. PCC 73109 374982 1 0 272 species 1702 genus 0 1 167375 Cyanobium 3 9 736 species 0 59930 Cyanobium gracile 1 2627006 1 0 957 no rank 957 species 0 1851505 Cyanobium sp. NIES-981 1 family 549 3 2 1 Acaryochloridaceae 1890429 0 13 2 Acaryochloris 155977 1 0 genus 547 0 Acaryochloris marina 155978 1 534 species family 974 4 1890428 0 0 76 4 Synechocystis 1142 1 genus 974 no rank 898 3 2640012 0 340 species 0 Synechocystis sp. PCC 6714 1147 1 279 species 0 2116702 Synechocystis sp. IPPAS B-1465 1 species 279 0 1 1148 Synechocystis sp. PCC 6803 802 order 0 1890505 3 802 family 0 Chroococcidiopsidaceae 1 1890528 12 3 790 genus 0 Chroococcidiopsis 54298 1 2 2 54299 Chroococcidiopsis thermalis 1 0 788 species 0 6 1 307596 1 Gloeobacteria class 689 688 order 0 Gloeobacterales 1 307595 17 5 671 family 0 1 Gloeobacteraceae 1890422 10 4 0 8 3 Gloeobacter 33071 1 genus 661 species 366 0 1 Gloeobacter kilaueensis 1416614 287 species 33072 Gloeobacter violaceus 1 0 52604 1 Pleurocapsales 3 8 0 2544 order 0 1 1890500 Hyellaceae 20 3 442 family genus 422 0 1 2 Pleurocapsa 1 44474 0 Pleurocapsa minor 54308 1 421 species 14 4 1890498 1 Dermocarpellaceae 0 family 2099 2085 genus Stanieria 102115 1 3 34 0 1015 no rank 2642663 1 0 0 1 Stanieria sp. NIES-3757 1807358 species 1015 1 Stanieria cyanosphaera 102116 0 species 1036 67819 3 0 223 phylum class 223 0 3 8 1 1663419 Fimbriimonadia 1 2 1 Fimbriimonadales 1663425 0 order 215 0 1663426 1 214 family genus 214 0 1 1005038 species 214 1 1005039 Fimbriimonas ginsengisoli 0 0 1 200795 Chloroflexi 40 1 3409 phylum 480 class 292625 6 0 6 1 Anaerolineales 1 292629 0 order 480 1 292628 Anaerolineaceae 5 6 0 479 family genus 226 0 2 1 1 2019482 Brevefilum 1 1986204 Brevefilum fermentans 0 species 225 genus 111 0 1 233189 species 111 0 1 167964 Anaerolinea thermophila 136 no rank 1324991 1 0 1889813 Anaerolineaceae bacterium oral taxon 439 1 0 136 species 0 475962 2 233 class 0 475963 1 Caldilineales 2 2 233 order 0 1 475964 family 231 genus 231 1 233191 0 Caldilinea aerophila 133453 1 0 231 species 0 8 3 1 301297 Dehalococcoidia class 579 177 genus 0 1 670486 Dehalogenimonas 4 3 species 51 1 Dehalogenimonas lykanthroporepellens 552810 0 0 Dehalogenimonas formicexedens 1839801 1 122 species order 399 0 4 1202465 0 Dehalococcoidaceae 1 1202464 1 4 399 family 398 genus 61434 1 Dehalococcoides 3 3 0 no rank 101 1 237581 0 0 1522671 Dehalococcoides sp. UCH007 1 101 species species 294 0 1 Dehalococcoides mccartyi 61435 Ardenticatenia 1382928 1 3 5 0 639 class 0 4 20 1 1382929 Ardenticatenales order 636 616 family Ardenticatenaceae 1382930 1 3 3 0 0 6 2 1 1988031 Candidatus Promineofilum genus 613 Candidatus Promineofilum breve 1806508 1 0 607 species 0 1 Chloroflexia 32061 10 4 1078 class 0 6 9 1 32064 Chloroflexales order 1074 0 5 1508594 suborder 630 630 family 0 1 1106 Chloroflexaceae 5 3 0 Chloroflexus 1107 1 4 25 627 genus 0 1 1108 Chloroflexus aurantiacus 190 2 380 species 190 strain Chloroflexus sp. Y-400-fl 480224 1 0 222 species Chloroflexus aggregans 152260 1 0 suborder 438 0 3 1508595 0 3 1508635 family 438 438 genus 120961 Roseiflexus 1 3 15 0 0 120962 Roseiflexus castenholzii 1 239 species 1 2609473 0 no rank 184 species 184 0 1 Roseiflexus sp. RS-1 357808 Thermomicrobia 1 189775 8 3 0 399 class 0 1 4 1 Thermomicrobiales 189776 order 115 family 114 0 3 6 1 189777 Thermomicrobiaceae 108 genus 0 499 Thermomicrobium 1 4 2 0 1 Thermomicrobium roseum 500 species 104 85000 3 0 281 subclass 2 3 1 85001 Sphaerobacterales 0 order 281 suborder 279 0 2 255728 85002 2 0 279 family 0 2056 Sphaerobacter 1 2 3 279 genus Sphaerobacter thermophilus 2057 1 0 276 species 189001 phylum 0 1 Actinobacteria 201174 633 13 class 2837 0 8 30 Coriobacteriia 1 84998 Coriobacteriales 1 84999 14 14 0 1041 order 674 family 0 1 1643824 Atopobiaceae 7 7 genus 7 1 Atopobium 1380 0 173 genus 0 2767353 1 173 species 0 Atopobium parvulum 1382 1 0 4 10 1 133925 Olsenella genus 487 148 no rank 0 2638792 1 species 148 0 1 712411 Olsenella sp. oral taxon 807 1 Olsenella uli 133926 0 species 108 species 221 1 1805478 Olsenella sp. Marseille-P2300 0 0 84107 1 Coriobacteriaceae 3 6 353 family 0 7 2 Coriobacterium 1 33870 genus 89 1 33871 Coriobacterium glomerans 0 species 82 5 2 1 Collinsella 102106 0 genus 128 0 1 74426 Collinsella aerofaciens species 123 no rank 133 1 84113 0 1531429 Coriobacteriaceae bacterium 68-1-3 1 0 133 species 1788 order Eggerthellales 1 1643822 15 19 0 0 14 30 1643826 1 Eggerthellaceae family 1769 1 84162 0 genus 143 84163 Cryptobacterium curtum 1 0 143 species Denitrobacterium 79603 1 2 4 0 84 genus 0 79604 Denitrobacterium detoxificans 1 80 species 0 1 84108 genus 122 0 Slackia heliotrinireducens 84110 1 122 species 0 1 447020 genus 165 species 165 1 Adlercreutzia equolifaciens 446660 0 221 genus 0 1981050 1 Phoenicibacter 5 2 0 Phoenicibacter massiliensis 1944646 1 216 species genus 600 5 3 644652 1 Gordonibacter 0 1841863 Gordonibacter massiliensis 1 0 318 species 277 species 0 1335613 Gordonibacter urolithinfaciens 1 404 genus Eggerthella 1 84111 5 3 0 266 species 0 Eggerthella lenta 84112 1 133 no rank 2648737 1 0 0 Eggerthella sp. YY7918 502558 1 133 species 919 class 0 1 1497346 Thermoleophilia 5 1 order 918 0 6 4 1 Solirubrobacterales 588673 5 3 Conexibacteraceae 1 320583 0 family 912 1 191494 Conexibacter 4 2 0 907 genus 0 1 Conexibacter woesei 191495 species 903 0 1 Rubrobacteria 84995 6 4 498 class order 494 6 5 1 Rubrobacterales 84996 0 Rubrobacteraceae 1 84997 4 1 0 488 family 3 11 42255 Rubrobacter 1 0 genus 487 0 1 Rubrobacter radiotolerans 42256 species 218 Rubrobacter xylanophilus 49319 1 0 258 species 943 no rank 1752188 4 0 0 Actinobacteria bacterium IMCC26103 1848756 1 206 species species 212 0 1 Actinobacteria bacterium IMCC25003 1848255 species 390 0 1 1848754 Actinobacteria bacterium IMCC19121 1 1848755 Actinobacteria bacterium IMCC26077 0 species 135 class 183083 519 580 Actinobacteria 1 1760 0 Streptosporangiales 1 85012 13 15 0 4264 order 0 Streptosporangiaceae 1 2004 4 13 2155 family genus 1289 1 83681 0 1289 no rank 0 2593643 1 0 1 Nonomuraea sp. ATCC 55076 1909395 species 1289 2 7 1 2000 Streptosporangium 0 genus 853 2001 Streptosporangium roseum 1 0 846 species family 1684 7 7 Nocardiopsaceae 1 83676 0 172 genus 0 1 Thermobifida 83677 1 2 0 1 Thermobifida fusca 2021 species 171 genus 1505 0 4 17 Nocardiopsis 2013 1 0 1 53437 Nocardiopsis alba species 363 675 species 0 2014 Nocardiopsis dassonvillei 1 species 450 0 1 280236 Nocardiopsis gilva 0 3 7 Thermomonosporaceae 2012 1 family 412 6 2 1 Thermomonospora 2019 0 genus 405 1 Thermomonospora curvata 2020 0 species 399 141 133 1 Micrococcales 85006 0 order 27981 0 1 145357 Dermacoccaceae 19 6 847 family 11 2 Dermacoccus 1 57495 0 genus 307 species 296 1 1274 Dermacoccus nishinomiyaensis 0 179 genus 0 57499 1 Kytococcus 4 2 0 Kytococcus sedentarius 1276 1 175 species 342 genus 745364 1 0 342 species 0 Luteipulveratus mongoliensis 571913 1 family 6147 0 35 38 1 1268 Micrococcaceae genus 378 0 1 1868332 378 species 0 556325 Neomicrococcus aestuarii 1 302 genus 32207 2 0 0 1 Rothia mucilaginosa 43675 species 198 2047 Rothia dentocariosa 1 0 104 species 2078575 1 0 152 genus 0 1618207 Arthrobacter sp. IHBB 11108 1 152 species 0 1742989 1 251 genus Glutamicibacter arilaitensis 256701 1 0 251 species 0 2 1 1 596707 Sinomonas genus 454 453 species 0 Sinomonas atrocyanea 37927 1 genus 707 4 12 1 57493 Kocuria 0 1 446860 Kocuria flava 0 species 344 72000 Kocuria rhizophila 1 0 173 species 71999 Kocuria palustris 1 0 178 species 1 1645 0 genus 134 Renibacterium salmoninarum 1646 1 0 134 species 1 4 1 1742993 Pseudarthrobacter 0 genus 526 1 Pseudarthrobacter chlorophenolicus 85085 0 species 181 0 1 121292 Pseudarthrobacter sulfonivorans species 189 0 361575 Pseudarthrobacter phenanthrenivorans 1 155 species 186 genus 0 1742992 1 species 186 1 Paenarthrobacter aurescens 43663 0 251 genus 1269 Micrococcus 1 2 5 0 0 1 Micrococcus luteus 1270 species 246 0 15 50 Arthrobacter 1663 1 genus 2768 0 1 37928 Arthrobacter crystallopoietes species 178 0 1 656366 Arthrobacter alpinus species 376 no rank 2164 12 235627 0 species 137 0 1 2079227 Arthrobacter sp. PGP41 1 1806905 Arthrobacter sp. ZXY-2 0 species 133 252 species Arthrobacter sp. U41 1849032 1 0 276 species 1704044 Arthrobacter sp. ERGS1:01 1 0 0 1652545 Arthrobacter sp. YC-RL1 1 189 species species 146 0 1 Arthrobacter sp. ATCC 21022 1771959 1494608 Arthrobacter sp. PAMC 25486 1 0 221 species 0 Arthrobacter sp. FB24 290399 1 153 species species 189 1 1690248 Arthrobacter sp. LS16 0 0 1 Arthrobacter sp. Rue61a 1118963 species 139 0 1 2020486 Arthrobacter sp. YN species 139 0 1357915 Arthrobacter sp. QXT-31 1 190 species 577468 1 0 96 no rank genus 96 1 2038 0 0 Tropheryma whipplei 2039 1 96 species 10 10 85020 1 Dermabacteraceae 0 family 1963 0 1 36739 genus 127 127 species 0 Dermabacter vaginalis 1630135 1 2 15 Devriesea 1 472568 0 genus 145 species 130 0 1 472569 Devriesea agamarum 1681 genus 0 43668 Brachybacterium 1 20 6 Brachybacterium sp. VM2412 2017484 1 0 350 species no rank 389 0 1 2623841 species 389 1 1903186 Brachybacterium sp. P6-10-X1 0 2017485 Brachybacterium sp. VR2415 1 0 250 species 0 1 1331682 Brachybacterium ginsengisoli species 337 43669 Brachybacterium faecium 1 0 335 species 309 family 0 85019 2 2 3 1696 Brevibacterium 1 0 genus 309 species 306 0 1 1703 Brevibacterium linens family 82 0 1 2 85022 1 Jonesiaceae 1 43673 0 genus 81 0 1 Jonesia denitrificans 43674 species 81 0 1 Sanguibacteraceae 145360 3 3 387 family 384 genus 60919 Sanguibacter 1 1 2 0 383 species 0 60920 Sanguibacter keddieii 1 0 Microbacteriaceae 1 85023 46 74 10923 family 1 33886 Rathayibacter 3 3 0 431 genus Rathayibacter tritici 33888 1 0 263 species 145458 Rathayibacter toxicus 1 0 165 species 425 genus 0 1 Agromyces 33877 3 2 species 422 0 1 453304 Agromyces aureus genus 350 0 4 2 1 Cnuibacter 1759331 1 1619308 Cnuibacter physcomitrellae 0 species 346 272 genus 518733 1 0 272 species 0 412690 Microterricola viridarii 1 genus 358 0 2 1 1 Frondihabitans 447237 no rank 357 1 2626248 0 1 1795630 Frondihabitans sp. PAMC 28766 0 species 357 641 genus 0 110932 1 Leifsonia 3 2 638 species Leifsonia xyli 1575 1 0 Cryobacterium 69578 1 3 3 0 512 genus no rank 238 0 1 2649013 238 species Cryobacterium sp. LW097 1978566 1 0 0 1 Cryobacterium arcticum 670052 species 271 genus 148 0 1 1434032 species 148 0 1 1159327 Pontimonas salivibrio 3953 genus 0 1 Microbacterium 33882 14 46 species 227 1 Microbacterium chocolatum 84292 0 0 2609290 8 2341 no rank species 257 1 Microbacterium sp. TPU 3598 1938334 0 Microbacterium sp. No. 7 1714373 1 0 599 species 0 2103230 Microbacterium sp. str. 'China' 1 235 species species 229 1 Microbacterium sp. CGR1 1696072 0 species 240 0 1 Microbacterium sp. 1.5R 1916917 species 221 1 Microbacterium sp. PAMC 28756 1795053 0 species 243 1 Microbacterium sp. XT11 367477 0 Microbacterium sp. BH-3-3-3 1906742 1 0 317 species 0 Microbacterium paludicola 300019 1 322 species species 376 1 162426 Microbacterium hominis 0 species 274 1 36805 Microbacterium aurum 0 0 Microbacterium testaceum 2033 1 367 species genus 165 1 1705353 0 165 species 0 708131 Aurantimicrobium minutum 1 genus 2015 35 6 Clavibacter 1 1573 0 0 387 5 1 Clavibacter michiganensis 28447 species 1980 subspecies 419 1 Clavibacter insidiosus 33014 0 0 Clavibacter nebraskensis 31963 1 366 subspecies 439 subspecies 0 Clavibacter sepedonicus 31964 1 0 1874630 Clavibacter capsici 1 369 subspecies 1655488 3 0 274 no rank 1655489 3 0 274 clade 274 genus 0 529883 Rhodoluna 1 3 6 species 136 0 1 529884 Rhodoluna lacicola 535712 Candidatus Rhodoluna planktonica 1 0 132 species genus 184 0 1 337004 184 species 0 Microcella alkaliphila 279828 1 1121 genus 2034 Curtobacterium 1 8 4 0 257496 2 0 797 no rank species 380 0 1 1905847 Curtobacterium sp. BH-2-1-1 1 1561023 Curtobacterium sp. MR_MD2014 0 species 417 species 316 0 1 Curtobacterium pusillum 69373 1500 family 0 1 85021 Intrasporangiaceae 12 8 genus 396 0 2 8 Janibacter 53457 1 species 388 1 857417 Janibacter indicus 0 0 265976 1 389 genus species 389 1 Serinicoccus sp. JLT9 1758689 0 356 genus 1 267408 Arsenicicoccus 2 3 0 0 2663846 1 353 no rank 1658671 Arsenicicoccus sp. oral taxon 190 1 0 353 species 3 2 Intrasporangium 53357 1 0 genus 347 0 1 53358 Intrasporangium calvum species 344 578 family Beutenbergiaceae 1 125316 3 1 0 577 genus 0 Beutenbergia 1 84756 2 3 574 species 0 Beutenbergia cavernae 84757 1 10 8 Promicromonosporaceae 1 85017 0 family 2972 157920 1 Cellulosimicrobium 3 5 0 1355 genus 0 1 1710 Cellulosimicrobium cellulans species 561 789 no rank 2624466 1 0 species 789 1 1980001 Cellulosimicrobium sp. TH-20 0 1 Xylanimonas 186188 2 4 0 569 genus 565 species 0 186189 Xylanimonas cellulosilytica 1 0 2 254250 genus 1038 Isoptericola variabilis 139208 1 0 501 species 0 Isoptericola dokdonensis 372663 1 537 species 0 2 85018 family 144 144 genus 1862 1 Dermatophilus 7 2 0 species 137 1 Dermatophilus congolensis 1863 0 0 Cellulomonadaceae 1 85016 6 5 1892 family 0 5 17 1 Cellulomonas 1707 genus 1887 species 367 0 1 11 Cellulomonas gilvus 448 no rank 0 2620175 1 0 2003551 Cellulomonas sp. PSBB021 1 448 species 536 species 0 Cellulomonas fimi 1708 1 1711 Cellulomonas flavigena 1 0 519 species Catenulisporales 1 414714 4 10 0 1080 order family 1070 13 3 414877 1 Catenulisporaceae 0 genus 1057 12 2 414878 1 Catenulispora 0 0 Catenulispora acidiphila 304895 1 1045 species 1396 order Geodermatophilales 1 1643682 3 8 0 1393 family 85030 1 Geodermatophilaceae 14 7 0 0 38501 Blastococcus 1 2 1 388 genus species 387 0 1 Blastococcus saxobsidens 138336 genus 528 0 2 2 1 Modestobacter 88138 1 477641 Modestobacter marinus 0 species 526 463 genus 0 Geodermatophilus 1860 1 2 2 Geodermatophilus obscurus 1861 1 0 461 species 0 4 6 Nakamurellales 1 1643684 order 341 335 family 0 1 85031 Nakamurellaceae 3 3 332 genus 0 Nakamurella 53460 1 2 1 Nakamurella multipartita 53461 1 0 331 species 20 7 Frankiales 1 85013 0 order 2965 2945 family 1 74712 Frankiaceae 22 6 0 2923 genus 0 1 1854 Frankia 16 5 no rank 658 0 1 2632575 658 species 0 298653 Frankia sp. EAN1pec 1 615 species 0 Frankia casuarinae 106370 1 0 1 298654 Frankia inefficax species 729 905 species Frankia alni 1859 1 0 3955 order 1 Candidatus Nanopelagicales 2039638 12 18 0 family 3937 0 11 2162846 genus 2074 26 7 622681 1 Candidatus Planktophila 0 0 1 Candidatus Planktophila vernalis 1884907 species 320 species 378 0 1 1884914 Candidatus Planktophila dulcis species 408 0 1 1884905 Candidatus Planktophila versatilis 305 species Candidatus Planktophila lacus 1884913 1 0 0 1884904 Candidatus Planktophila sulfonica 1 213 species 424 species Candidatus Planktophila limnetica 573600 1 0 0 1 2039639 Candidatus Nanopelagicus 16 4 1863 genus 0 1884634 Candidatus Nanopelagicus limnes 1 568 species 0 Candidatus Nanopelagicus hibericus 1884915 1 568 species 1 Candidatus Nanopelagicus abundans 1884916 0 species 711 410 order 0 85014 Glycomycetales 1 3 1 0 2 85034 family 409 409 genus 0 283810 Stackebrandtia 1 4 2 405 species 0 283811 Stackebrandtia nassauensis 1 6986 order 0 Micromonosporales 1 85008 13 20 0 71 19 28056 1 Micromonosporaceae family 6973 genus 1659 5 4 1 1873 Micromonospora 0 2617518 1 0 614 no rank Micromonospora sp. L5 648999 1 0 614 species species 450 1 Verrucosispora maris 1003110 0 1 47850 Micromonospora aurantiaca 0 species 590 0 Verrucosispora 84593 1 2 genus 635 genus 0 168694 Salinispora 1 4 3 270 species 0 168695 Salinispora tropica 1 species 361 0 1 168697 Salinispora arenicola 2968 genus 1865 Actinoplanes 1 24 6 0 0 196914 Actinoplanes friuliensis 1 603 species 0 3 2626549 no rank 1744 species 562 1 Actinoplanes sp. SE50/110 134676 0 0 649831 Actinoplanes sp. N902-109 1 620 species 1 2033844 Actinoplanes sp. SE50 0 species 562 597 species 1866 Actinoplanes missouriensis 1 0 1638 genus 673534 Plantactinospora 1 7 4 0 no rank 1631 0 3 2631981 2024580 Plantactinospora sp. KBS50 1 0 450 species 596 species 2071627 Plantactinospora sp. BB1 1 0 species 585 0 1 2108470 Plantactinospora sp. BC1 1643683 1 Acidothermales 5 3 0 128 order 0 2 85032 family 123 0 28048 1 Acidothermus 1 2 123 genus 122 species 28049 Acidothermus cellulolyticus 1 0 no rank 397 0 2 1643818 genus 397 3 2 1 147067 Thermobispora 0 species 394 1 Thermobispora bispora 2006 0 0 1 622452 Kineosporiales 2 4 614 order family 612 3 2 1 83778 Kineosporiaceae 0 0 2 3 33981 Kineococcus 1 genus 610 0 131568 Kineococcus radiotolerans 1 607 species order 253 0 3 622450 family 253 6 3 Actinopolysporaceae 1 622451 0 genus 247 0 2 1 Actinopolyspora 1 1849 246 species 0 414996 Actinopolyspora erythraea 1 0 1 2037 Actinomycetales 19 6 2275 order 2269 family 1 Actinomycetaceae 2049 30 18 0 0 1 1653174 genus 107 Actinotignum schaalii 59505 1 0 107 species 1069494 1 Trueperella 3 2 0 151 genus species 148 0 1 1661 Trueperella pyogenes 98 genus 28263 Arcanobacterium 1 2 2 0 1 Arcanobacterium haemolyticum 28264 0 species 96 Actinomyces 1654 1 25 9 0 1634 genus 0 1912795 Actinomyces sp. VUL4_3 1 56 species 426 species 0 Actinomyces radicidentis 111015 1 0 Actinomyces gaoshouyii 1960083 1 187 species 1 544580 Actinomyces oris 0 species 164 no rank 706 0 3 2609248 species 167 1 Actinomyces sp. oral taxon 897 2081702 0 species 210 1 Actinomyces sp. Chiba101 1851395 0 species 329 1 Actinomyces sp. oral taxon 414 712122 0 0 Actinomyces pacaensis 1852377 1 70 species 1 2529408 0 genus 116 52773 Actinomyces meyeri 1 0 116 species genus 133 1 2 1 Mobiluncus 2050 0 0 1 Mobiluncus curtisii 2051 species 132 order 39565 179 160 Corynebacteriales 1 85007 0 31 34 1 85025 Nocardiaceae 0 family 11545 genus 7913 0 179 23 Rhodococcus 1827 1 species 335 0 1 Rhodococcus hoagii 43767 0 1 Rhodococcus rhodochrous 1829 species 320 0 1 37919 Rhodococcus opacus species 1404 1 1833 Rhodococcus erythropolis 0 species 322 no rank 2984 12 192944 0 0 1 Rhodococcus sp. 2G 1570939 species 252 species 292 1 1653478 Rhodococcus sp. PBTS 1 0 species 397 0 1 1805827 Rhodococcus sp. MTM3W5.2 0 1045808 Rhodococcus sp. YL-1 1 158 species 0 Rhodococcus sp. p52 935199 1 306 species 192 species 0 Rhodococcus sp. H-CA8f 1727214 1 0 1564114 Rhodococcus sp. B7740 1 218 species 1 1033922 Rhodococcus sp. WB1 0 species 470 0 679318 Rhodococcus sp. WMMA185 1 131 species 0 Rhodococcus sp. 008 1723645 1 198 species 0 1 Rhodococcus sp. PBTS 2 1653479 species 194 176 species 0 Rhodococcus sp. BH4 1807790 1 species 204 1 Rhodococcus fascians 1828 0 1 Rhodococcus ruber 1830 0 species 518 species 209 0 1 Rhodococcus qingshengii 334542 1 191292 Rhodococcus aetherivorans 0 species 517 406 species Rhodococcus pyridinivorans 103816 1 0 515 species 0 132919 Rhodococcus jostii 1 7 49 1817 Nocardia 1 0 genus 3598 1 37326 Nocardia brasiliensis 0 species 936 433 species Nocardia seriolae 37332 1 0 688 species Nocardia cyriacigeorgica 135487 1 0 433 species 0 Nocardia terpenica 455432 1 species 648 1 Nocardia farcinica 37329 0 species 411 0 1 Nocardia nova 37330 2067 family 1 Gordoniaceae 85026 9 6 0 genus 2061 0 8 20 2053 Gordonia 1 1 2055 Gordonia terrae 0 species 256 species 294 1 Gordonia polyisoprenivorans 84595 0 species 300 1 1136941 Gordonia phthalatica 0 species 294 0 1 1004901 Gordonia iterans 2 2657482 0 no rank 556 Gordonia sp. KTR9 337191 1 0 284 species 0 2059875 Gordonia sp. YC-JH1 1 272 species species 341 0 1 Gordonia bronchialis 2054 family 615 3 85029 0 genus 615 0 3 4 1 37914 Dietzia 0 Dietzia timorensis 499555 1 169 species 0 2617939 1 442 no rank species 442 0 1 712270 Dietzia sp. oral taxon 368 0 33 52 1653 Corynebacteriaceae 1 family 7634 Corynebacterium 1 1716 116 51 0 7601 genus species 147 0 1 Corynebacterium ureicelerivorans 401472 1 Corynebacterium testudinoris 136857 0 species 296 species 124 1 Corynebacterium deserti 1408191 0 1 Corynebacterium maris 575200 0 species 192 62 species Corynebacterium argentoratense 42817 1 0 113 species 108486 Corynebacterium falsenii 1 0 1 1230998 Corynebacterium frankenforstense 0 species 296 species 148 1 65058 Corynebacterium ulcerans 0 143 species 0 92706 [Brevibacterium] flavum 1 species 90 1 161895 Corynebacterium phocae 0 species 137 1 1719 Corynebacterium pseudotuberculosis 0 85 species 0 Corynebacterium casei 160386 1 1 Corynebacterium atypicum 191610 0 species 115 93 species 0 Corynebacterium singulare 161899 1 species 143 1 Corynebacterium ammoniagenes 1697 0 1 Corynebacterium lactis 1231000 0 species 92 1 Corynebacterium doosanense 1121358 0 species 188 156978 Corynebacterium imitans 1 0 126 species species 144 0 1 Corynebacterium glaucum 187491 Corynebacterium uterequi 1072256 1 0 212 species Corynebacterium crudilactis 1652495 1 0 138 species 1721 Corynebacterium callunae 1 0 111 species species 87 1 Corynebacterium aurimucosum 169292 0 270 species 1223514 Corynebacterium humireducens 1 0 0 2 2624378 no rank 202 106 species Corynebacterium sp. NML98-0116 702967 1 0 0 1487956 Corynebacterium sp. ATCC 6931 1 96 species species 156 1 Corynebacterium cystitidis 35757 0 93 species 0 161896 Corynebacterium camporealensis 1 Corynebacterium glyciniphilum 1404244 1 0 110 species Corynebacterium resistens 258224 1 0 74 species 0 1 43770 Corynebacterium striatum species 172 species 178 0 1 1717 Corynebacterium diphtheriae species 201 1 1727 Corynebacterium variabile 0 species 96 0 1 Corynebacterium efficiens 152794 126 species 0 1705 Corynebacterium stationis 1 species 217 1 38305 Corynebacterium vitaeruminis 0 1 Corynebacterium epidermidicanis 1050174 0 species 86 0 1 Corynebacterium terpenotabidum 89154 species 170 species 338 0 1 Corynebacterium glutamicum 1718 species 94 0 1 43771 Corynebacterium urealyticum 0 1 Corynebacterium flavescens 28028 species 133 1 161879 Corynebacterium kroppenstedtii 0 species 64 212 species Corynebacterium marinum 349751 1 0 species 224 0 1 Corynebacterium halotolerans 225326 146827 Corynebacterium simulans 1 0 88 species 1 Corynebacterium aquilae 203263 0 species 178 1 571915 Corynebacterium mustelae 0 species 103 0 1 Corynebacterium jeikeium 38289 species 199 species 197 1 Corynebacterium kutscheri 35755 0 species 222 0 1 Corynebacterium sphenisci 191493 0 316606 1 188 family 0 286801 1 188 genus 0 286802 Segniliparus rotundus 1 188 species 0 Tsukamurellaceae 1 85028 4 2 731 family 729 genus 0 Tsukamurella 1 2060 3 4 275 species 0 Tsukamurella paurometabola 2061 1 57704 Tsukamurella tyrosinosolvens 1 0 450 species 1762 Mycobacteriaceae 1 57 29 0 16502 family 522 genus 1073531 2 0 1 Mycobacterium sinense 875328 0 species 253 species 269 0 1 Mycobacterium terrae 1788 genus 173 3 2 697025 1 Hoyosella 0 0 1 Hoyosella subflava 639313 species 170 0 34 448 1763 1 Mycobacterium genus 9115 145 species 29311 Mycobacterium haemophilum 1 0 289 species Mycobacterium liflandii 261524 1 0 572 species group 77643 4 0 0 1 Mycobacterium tuberculosis 1773 3 178 450 species 0 1765 Mycobacterium bovis 1 138 biotype 134 biotype 0 Mycobacterium africanum 33894 1 species 122 1 78331 Mycobacterium canettii 0 54 species Mycobacterium leprae 1769 1 0 species group 247 1 2249310 0 0 Mycobacterium shigaense 722731 1 247 species species 377 0 1 Mycobacterium dioxanotrophicus 482462 120793 8 0 2389 species group 94 species 0 1138383 Mycobacterium paraintracellulare 1 0 1767 Mycobacterium intracellulare 1 4 170 643 species 0 1 Mycobacterium indicus pranii 35617 subspecies 102 subspecies 104 0 1 Mycobacterium yongonense 1203599 subspecies 267 1 Mycobacterium chimaera 222805 0 171 species 0 Mycobacterium marseillense 701042 1 1218 species 0 Mycobacterium avium 1764 1 1 Mycobacterium colombiense 339268 0 species 263 0 Mycobacterium kansasii 1768 1 259 species 1 Mycobacterium ulcerans 1809 0 species 321 0 1 1781 Mycobacterium marinum species 489 13 2642494 0 no rank 3525 species 323 1 212767 Mycobacterium sp. JS623 0 0 1273687 Mycobacterium sp. VKM Ac-1817D 1 205 species species 356 0 1 164756 Mycobacterium sp. MCS species 385 1 Mycobacterium sp. KMS 189918 0 Mycobacterium sp. EPa45 1545728 1 0 272 species 95 species 0 1168287 Mycobacterium sp. MOTT36Y 1 species 268 1 1920667 Mycobacterium sp. WY10 0 species 281 1 Mycobacterium sp. YC-RL4 1682113 0 1 2051552 Mycobacterium sp. PYR15 0 species 301 0 Mycobacterium sp. QIA-37 1561223 1 126 species Mycobacterium sp. djl-10 1879023 1 0 309 species 0 1570328 Mycobacterium sp. NRRL B-3805 1 262 species 0 Mycobacterium sp. JLS 164757 1 342 species 5 670516 0 genus 2021 1 1520670 Mycobacterium stephanolepidis 0 species 133 83262 Mycobacterium immunogenum 1 0 732 species 1 Mycobacterium saopaulense 1578165 0 species 167 551 species 0 Mycobacterium abscessus 36809 1 1 Mycobacterium chelonae 1774 0 species 438 genus 4642 0 13 1866885 species 327 0 1 758802 Mycobacterium litorale Mycobacterium fortuitum 1766 1 0 205 species 1797 Mycobacterium thermoresistibile 1 0 260 species species 393 0 1 Mycobacterium aurum 1791 0 36814 Mycobacterium rhodesiae 1 275 species 1772 Mycobacterium smegmatis 1 0 398 species Mycobacterium goodii 134601 1 0 343 species 0 Mycobacterium vanbaalenii 110539 1 451 species 0 1804 Mycobacterium gilvum 1 453 species species 434 1 1800 Mycobacterium chubuense 0 423 species Mycobacterium phlei 1771 1 0 1 1795 Mycobacterium neoaurum 0 species 262 0 1 1810 Mycobacterium vaccae species 418 104 no rank 697024 2 0 0 Lawsonella 1 1847725 2 2 104 genus 102 species 0 Lawsonella clevelandensis 1528099 1 Pseudonocardiales 1 85010 16 40 0 16720 order 122 39 Pseudonocardiaceae 1 2070 0 family 16704 2 1 1851 Saccharomonospora 1 0 genus 286 0 1 1852 Saccharomonospora viridis species 285 1 2 Prauserella 142577 1 0 genus 374 0 1 530584 Prauserella marina species 373 484 genus 1 Alloactinosynnema 674734 2 1 0 0 2636053 1 483 no rank 1 1653480 Alloactinosynnema sp. L-07 0 species 483 genus 3771 38 7 Amycolatopsis 1 1813 0 0 1814 Amycolatopsis methanolica 1 526 species 1029 no rank 0 2618356 2 species 536 0 1 1896961 Amycolatopsis sp. AA4 0 1 1911175 Amycolatopsis sp. BJA-103 species 493 898 species 31958 Amycolatopsis orientalis 1 0 species 743 1 33910 Amycolatopsis mediterranei 0 0 Amycolatopsis japonica 208439 1 537 species genus 4091 8 51 Pseudonocardia 1847 1 0 650 species 0 240495 Pseudonocardia dioxanivorans 1 0 2619320 6 3390 no rank 1 Pseudonocardia sp. EC080610-09 1688404 0 species 618 1 1096856 Pseudonocardia sp. EC080619-01 0 species 597 1641402 Pseudonocardia sp. HH130629-09 1 0 514 species 531 species Pseudonocardia sp. EC080625-04 1096868 1 0 0 Pseudonocardia sp. HH130630-07 1690815 1 526 species 604 species 0 Pseudonocardia sp. AL041005-10 445576 1 165301 Lentzea 1 2 3 0 629 genus species 626 1 1586287 Lentzea guizhouensis 0 genus 633 2 4 Saccharopolyspora 1835 1 0 species 629 1 Saccharopolyspora erythraea 1836 0 751 genus 0 2071 1 103731 Saccharothrix espanaensis 1 0 751 species 1739 genus Actinosynnema 1 40566 3 15 0 species 854 1 40567 Actinosynnema mirum 0 1 42197 Actinosynnema pretiosum 0 species 870 0 Kutzneria 43356 1 13 2 559 genus 546 species 0 Kutzneria albida 43357 1 617 genus 2029 1 0 617 species 0 Kibdelosporangium phytohabitans 860235 1 2648 genus 0 65496 Actinoalloteichus 1 6 37 species 252 1 Actinoalloteichus hymeniacidonis 340345 0 0 1 Actinoalloteichus hoggarensis 1470176 species 636 2 2644606 0 no rank 1057 0 1 Actinoalloteichus sp. AHMU CJ021 2072503 species 598 species 459 1 Actinoalloteichus sp. GBA129-24 1612551 0 0 1 1612552 Actinoalloteichus sp. ADI127-7 species 666 0 52018 1 192 no rank species 192 0 1 1650658 Actinobacteria bacterium IMCC26256 0 1 85011 Streptomycetales 82 107 64513 order family 64406 81 165 Streptomycetaceae 1 2062 0 genus 3357 0 5 26 2063 1 Kitasatospora Kitasatospora albolonga 68173 1 0 645 species 646 species Kitasatospora aureofaciens 1894 1 0 species 1156 0 1 2066 Kitasatospora setae no rank 884 1 2633591 0 1 2018025 Kitasatospora sp. MMS16-BH015 0 species 884 60884 genus 0 Streptomyces 1883 1 75 838 species 616 1 Streptomyces gilvosporeus 553510 0 0 Streptomyces puniciscabiei 164348 1 632 species 0 1 1950 Streptomyces peucetius species 445 5679 species 75293 Streptomyces autolyticus 1 0 species 546 1 1969 Streptomyces chartreusis 0 864 species 0 92644 Streptomyces malaysiensis 1 781 species Streptomyces alboflavus 67267 1 0 0 24 2593676 no rank 17285 1 1725411 Streptomyces sp. CdTB01 0 species 786 1 Streptomyces sp. WAC00288 2094021 0 species 650 768 species 1841249 Streptomyces sp. RTd22 1 0 1 Streptomyces sp. CMB-StM0423 2059884 0 species 819 0 465541 Streptomyces sp. Mg1 1 702 species 577 species Streptomyces sp. CCM_MD2014 1561022 1 0 species 632 0 1 1661694 Streptomyces sp. Tue 6075 species 551 0 1 1751294 Streptomyces sp. 4F 0 1 Streptomyces sp. TN58 234612 species 561 0 1 Streptomyces sp. fd1-xmd 1812480 species 684 species 1243 0 1 1972846 Streptomyces sp. Sge12 683 species 0 Streptomyces sp. SAT1 1849967 1 0 444103 Streptomyces sp. CNQ-509 1 760 species 1 Streptomyces sp. P3 2135430 0 species 810 Streptomyces sp. CLI2509 1984801 1 0 749 species species 743 1 206662 Streptomyces sp. FR-008 0 581 species 0 Streptomyces sp. MOE7 1961713 1 species 412 0 1 862751 Streptomyces sp. SirexAA-E 724 species 0 1262452 Streptomyces sp. 769 1 422 species 0 1265601 Streptomyces sp. PAMC 26508 1 616 species 0 1649184 Streptomyces sp. CFMR 7 1 species 1274 1 Streptomyces sp. M56 1495638 0 531 species 0 1837283 Streptomyces sp. S8 1 0 1 Streptomyces sp. 3211 1964449 species 1007 874 species 0 Streptomyces violaceusniger 68280 1 Streptomyces xiamenensis 408015 1 0 420 species 823 species 0 362257 Streptomyces vietnamensis 1 species 601 1 Streptomyces cyaneogriseus 68192 0 1509 species Streptomyces venezuelae 54571 1 0 species 931 0 1 379067 Streptomyces bingchenggensis 1038928 Streptomyces xinghaiensis 1 0 513 species 0 1 Streptomyces rubrolavendulae 285473 species 653 0 1 1616117 Streptomyces formicae species 859 1358 species group 1477431 2 0 species 771 0 1 Streptomyces coelicolor 1902 0 42239 Streptomyces sampsonii 1 587 species 753 species Streptomyces leeuwenhoekii 1437453 1 0 species 767 1 33903 Streptomyces avermitilis 0 1 1940 Streptomyces albireticuli 0 species 696 0 68202 Streptomyces fulvissimus 1 520 species Streptomyces collinus 42684 1 0 631 species species 548 1 2049881 Streptomyces sp. XZHG99 0 0 Streptomyces hygroscopicus 1912 1 1680 species 1907 Streptomyces glaucescens 1 0 560 species 0 1 Streptomyces albulus 68570 species 945 1935 Streptomyces violaceoruber 1 0 579 species 1467 species Streptomyces albus 1888 1 0 0 1 Streptomyces griseochromogenes 68214 species 562 727 species 0 Streptomyces lividans 1916 1 1 Streptomyces lydicus 47763 0 species 1816 species 667 0 1 1889 Streptomyces ambofaciens species 428 0 1 1355015 Streptomyces pluripotens 0 1930 Streptomyces scabiei 1 834 species 1 1642299 Streptomyces alfalfae 0 species 731 656 species 1971 Streptomyces noursei 1 0 species 610 0 1 Streptomyces sp. S10(2016) 1783515 770 species 0 1926 Streptomyces reticuli 1 species 952 0 1 1915 Streptomyces lincolnensis 641 species Streptomyces pristinaespiralis 38300 1 0 species 1308 1 Streptomyces pactum 68249 0 species 556 0 1 29303 Streptomyces cattleya species 660 0 1 Streptomyces niveus 193462 1 146923 Streptomyces parvulus 0 species 615 498 species 0 Streptomyces pratensis 1169025 1 0 1 Streptomyces clavuligerus 1901 species 629 0 1 1914 Streptomyces lavendulae species 779 0 629295 2 1072 species group species subgroup 508 0 1 1482558 0 1 Streptomyces globisporus 1908 species 508 0 1 1482596 species subgroup 564 564 species 1911 Streptomyces griseus 1 0 27 9 1 Bifidobacteriales 85004 0 order 2917 0 12 26 31953 1 Bifidobacteriaceae family 2908 0 1 Scardovia 196081 1 2 114 genus 113 species 0 78259 Scardovia inopinata 1 0 196082 1 Parascardovia 2 3 93 genus 90 species 0 78258 Parascardovia denticolens 1 0 2 1 1 Gardnerella 2701 genus 432 431 species 2702 Gardnerella vaginalis 1 0 2257 genus 1 1678 Bifidobacterium 19 55 0 186 species 0 158787 Bifidobacterium scardovii 1 0 1 Bifidobacterium indicum 1691 species 49 Bifidobacterium angulatum 1683 1 0 56 species 0 1 Bifidobacterium breve 1685 species 212 90 species 1680 Bifidobacterium adolescentis 1 0 2 50 Bifidobacterium catenulatum 1686 1 0 species 136 1 630129 Bifidobacterium kashiwanohense 0 subspecies 86 77 species 0 33905 Bifidobacterium thermophilum 1 72 species 0 Bifidobacterium asteroides 1684 1 1 1694 Bifidobacterium pseudolongum 0 species 228 137 species 28025 Bifidobacterium animalis 1 0 102 species 1689 Bifidobacterium dentium 1 0 316 species 216816 Bifidobacterium longum 1 0 1 Bifidobacterium actinocoloniiforme 638619 0 species 96 0 Bifidobacterium pseudocatenulatum 28026 1 49 species species 126 1 1681 Bifidobacterium bifidum 0 species 46 0 1 1687 Bifidobacterium coryneforme 0 1 Bifidobacterium choerinum 35760 species 224 32 23 85009 1 Propionibacteriales 0 order 5612 0 25 13 85015 1 Nocardioidaceae family 3069 0 Micropruina 1 116071 1 2 226 genus 0 1 Micropruina glycogenica 75385 species 225 genus 382 2 1 Aeromicrobium 2040 1 0 381 species Aeromicrobium erythreum 2041 1 0 genus 631 0 2 2 1 Pimelobacter 2044 1 Pimelobacter simplex 2045 0 species 629 470 genus 0 182639 Kribbella 1 2 17 0 1 182640 Kribbella flavida species 453 12 4 1839 Nocardioides 1 0 genus 1335 species 592 1 450734 Nocardioides dokdonensis 0 species 311 1 2045452 Nocardioides sp. 78 0 1 2615069 0 no rank 420 1 196162 Nocardioides sp. JS614 0 species 420 0 31957 1 Propionibacteriaceae 26 18 2520 family 165 genus 2801844 1 0 0 1 1750 Pseudopropionibacterium propionicum species 165 366 genus 1 Cutibacterium 1912216 4 2 0 123 species 0 Cutibacterium avidum 33010 1 1 1747 Cutibacterium acnes 0 species 160 0 1 Cutibacterium granulosum 33011 species 81 327 genus 0 1 1743 Propionibacterium 5 3 species 254 0 1 1744 Propionibacterium freudenreichii 2608905 1 0 68 no rank 671223 Propionibacterium sp. oral taxon 193 1 0 68 species genus 129 1 203133 0 129 no rank 2633994 1 0 129 species Propionimicrobium sp. Marseille-P3275 1871034 1 0 224 genus 29404 1 0 1 Microlunatus phosphovorus 29405 0 species 224 0 Tessaracoccus 1 72763 5 11 971 genus 0 1 399497 Tessaracoccus flavescens species 245 species 234 1 1332264 Tessaracoccus aquimaris 0 0 Tessaracoccus flavus 1610493 1 187 species 2635419 1 0 294 no rank Tessaracoccus sp. T2.5-30 1909732 1 0 294 species 0 1 Acidipropionibacterium 1912215 1 2 312 genus Acidipropionibacterium acidipropionici 1748 1 0 311 species 708 class 1 84992 Acidimicrobiia 7 4 0 9 6 1 Acidimicrobiales 84993 0 order 704 family 216 8 3 1 84994 Acidimicrobiaceae 0 genus 208 0 2 9 53634 Acidimicrobium 1 species 199 0 1 53635 Acidimicrobium ferrooxidans 479 family 2448023 2 0 0 1 Ilumatobacter 682522 2 7 479 genus 0 1 Ilumatobacter coccineus 467094 species 472 34 1297 0 phylum 5485 5485 class 1 Deinococci 188787 18 34 0 2 2762275 0 order 305 0 332247 2 305 family 305 genus Truepera 332248 1 8 2 0 297 species 0 332249 Truepera radiovictrix 1 0 15 33 118964 1 Deinococcales order 2972 2939 family 183710 1 Deinococcaceae 14 10 0 2929 genus 1298 1 Deinococcus 13 41 0 1 1182568 Deinococcus puniceus 0 species 179 species 244 0 1 Deinococcus actinosclerus 1768108 species 329 1 502394 Deinococcus gobiensis 0 Deinococcus deserti 310783 1 0 184 species species 205 0 1 Deinococcus radiodurans 1299 286 species 1182571 Deinococcus swuensis 1 0 160 species Deinococcus geothermalis 68909 1 0 species 246 1 Deinococcus soli Cha et al. 2016 1309411 0 0 2623546 1 223 no rank 223 species Deinococcus sp. NW-56 2080419 1 0 432329 Deinococcus peraridilitoris 1 0 220 species 310 species 55148 Deinococcus proteolyticus 1 0 302 species 309887 Deinococcus maricopensis 1 0 order 2190 0 16 9 Thermales 1 68933 1 188786 Thermaceae 15 27 0 2181 family 233 genus Marinithermus 186191 1 2 13 0 0 1 Marinithermus hydrothermalis 186192 species 220 314 genus 0 Meiothermus 1 65551 3 3 0 Meiothermus ruber 277 1 194 species 0 1 Meiothermus silvanus 52022 species 117 9 8 270 Thermus 1 0 genus 1373 species 190 1 456163 Thermus parvatiensis 0 species 490 0 1 274 Thermus thermophilus 106 species Thermus scotoductus 37636 1 0 species 168 0 1 271 Thermus aquaticus 1 2619321 0 no rank 157 157 species 0 1111069 Thermus sp. CCB_US3_UF1 1 56957 Thermus oshimai 1 0 138 species 115 species Thermus brockianus 56956 1 0 234 genus 0 208447 1 0 1 187137 Oceanithermus profundus species 234 1859062 1 0 162 no rank genus 162 1 262406 0 162 species Thermobaculum terrenum 166501 1 0 38483 phylum 0 Tenericutes 1 544448 102 4 2 713063 0 no rank 1408 1 Tenericutes bacterium MZ-XQ 1911683 0 species 641 767 species 0 Tenericutes bacterium MO-XQ 1911684 1 80 97 31969 1 Mollicutes 0 class 36509 0 2085 Mycoplasmatales 1 44 64 16253 order family 16189 0 30 43 1 Mycoplasmataceae 2092 4731 genus 2767358 12 0 1 29555 Mycoplasma canis 0 species 444 304 species 0 2109 Mycoplasma synoviae 1 species 690 1 Mycoplasma bovis 28903 0 species 261 0 1 Mycoplasma californicum 2113 species 358 1 48003 Mycoplasma pullorum 0 1 2112 Mycoplasma bovigenitalium 0 species 288 327 species Mycoplasma bovirhinis 29553 1 0 1 Mycoplasma arginini 2094 0 species 336 428 species 0 Mycoplasma agalactiae 2110 1 Mycoplasma fermentans 2115 1 0 457 species 1 Mycoplasma pulmonis 2107 0 species 426 species 412 1 Mycoplasma cynos 171284 0 genus 10511 0 27 183 2093 Mycoplasma 1 0 1 2097 Mycoplasma genitalium species 231 3 656088 0 species group 2759 2105 Mycoplasma leachii 1 0 703 species 0 1 Mycoplasma capricolum 2095 species 818 1238 species Mycoplasma mycoides 2102 1 0 0 Mycoplasma canadense 29554 1 339 species 0 2118 Mycoplasma mobile 1 492 species 1 2128 Mycoplasma flocculare 0 species 208 116 species 0 2104 Mycoplasma pneumoniae 1 species 326 0 1 Mycoplasma haemofelis 29501 0 1 2096 Mycoplasma gallisepticum species 340 371 species 50052 Mycoplasma crocodyli 1 0 species 199 1 2111 Mycoplasma arthritidis 0 0 1 51365 Mycoplasma yeatsii species 709 523 species Mycoplasma penetrans 28227 1 0 2099 Mycoplasma hyopneumoniae 1 0 387 species 141 species 0 Mycoplasma haemocanis 136241 1 Mycoplasma hominis 2098 1 0 659 species 1 Mycoplasma bovoculi 45362 0 species 472 1 2683645 0 no rank 316 species 316 0 1 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) species 429 0 1 2100 Mycoplasma hyorhinis species 193 1 Mycoplasma suis 57372 0 species 78 1 Mycoplasma ovis 171632 0 species 108 0 1 65123 Mycoplasma wenyonii species 500 0 1 Mycoplasma putrefaciens 2123 species 197 0 1 Mycoplasma dispar 86660 species 235 0 1 Mycoplasma parvum 984991 0 2129 Ureaplasma 1 3 2 917 genus 1 Ureaplasma urealyticum 2130 0 species 415 500 species 0 134821 Ureaplasma parvum 1 0 14 13 1 186329 Acholeplasmatales order 3504 0 Acholeplasmataceae 2146 1 10 12 3490 family 1454 genus 0 33926 Candidatus Phytoplasma 1 6 14 0 85620 3 777 species group 243 species 202462 Maize bushy stunt phytoplasma 1 0 304 species Onion yellows phytoplasma 100379 1 0 species 230 0 1 Aster yellows witches'-broom phytoplasma 229545 302 species group 85632 1 0 59748 Candidatus Phytoplasma australiense 1 0 302 species species group 361 0 1 85630 361 species Candidatus Phytoplasma mali 37692 1 0 genus 2026 19 5 1 Acholeplasma 2147 0 1 Acholeplasma oculi 35623 0 species 613 species 616 0 1 38986 Acholeplasma palmae 307 species 0 61635 Acholeplasma brassicae 1 2148 Acholeplasma laidlawii 1 0 471 species 1 186328 Entomoplasmatales 39 53 0 16672 order family 11537 24 35 1 2131 Spiroplasmataceae 0 genus 11502 0 23 182 Spiroplasma 1 2132 species 675 1 Spiroplasma turonicum 216946 0 1 2144 Spiroplasma mirum 0 species 332 0 1 216945 Spiroplasma syrphidicola species 468 0 Spiroplasma chrysopicola 216933 1 421 species 717 species 0 Spiroplasma diminutum 216936 1 0 1 Spiroplasma culicicola 216935 species 552 0 2637901 2 868 no rank Spiroplasma sp. NBRC 100390 1914410 1 0 434 species 434 species 1898044 Spiroplasma sp. TU-14 1 0 685 species 0 216942 Spiroplasma litorale 1 Spiroplasma cantharicola 362837 1 0 627 species 498 species 0 47834 Spiroplasma kunkelii 1 0 2139 Spiroplasma clarkii 1 497 species 1 Spiroplasma sabaudiense 216944 0 species 386 species 668 1 Spiroplasma floricola 216937 0 species 798 0 1 Spiroplasma taiwanense 2145 1 Spiroplasma monobiae 2136 0 species 489 0 1 216934 Spiroplasma corruscae species 545 0 1 1114980 Spiroplasma atrichopogonis species 335 0 1 2133 Spiroplasma citri species 529 0 1 Spiroplasma helicoides 216938 species 529 285 species 0 315358 Spiroplasma eriocheiris 1 species 416 1 2137 Spiroplasma apis 0 1 33925 Entomoplasmataceae 14 16 0 5082 family 0 1 46239 Mesoplasma 8 107 3527 genus 1 Mesoplasma lactucae 138853 0 species 420 species 365 0 1 2149 Mesoplasma entomophilum 0 1 Mesoplasma chauliocola 216427 species 410 species 314 1 225999 Mesoplasma syrphidae 0 1 Mesoplasma florum 2151 0 species 989 species 479 1 324078 Mesoplasma coleopterae 0 0 Mesoplasma tabanidae 219745 1 443 species genus 1539 0 5 16 Entomoplasma 1 46238 456 species 214888 Entomoplasma luminosum 1 0 175 species 0 Entomoplasma freundtii 74700 1 456 species 0 Entomoplasma somnilux 215578 1 1 81459 Entomoplasma melaleucae 0 species 436 562 no rank 2799557 2 0 genus 562 2 3 1 Candidatus Izimaplasma 1912503 0 0 2624196 1 559 no rank 559 species Candidatus Izimaplasma sp. HR1 1541959 1 0 0 1 Firmicutes 1239 688 65 277859 phylum 0 1676648 3 206 class 206 order 0 1676649 3 206 family 1 1676650 Limnochordaceae 2 3 0 genus 204 0 6 2 1676651 1 Limnochorda 1 Limnochorda pilosa 1555112 0 species 198 165555 class 0 Bacilli 1 91061 149 428 0 314 261 1385 1 Bacillales order 113261 family 973 0 7 9 Alicyclobacillaceae 1 186823 29330 1 0 237 genus 1 Alicyclobacillus acidocaldarius 405212 0 species 237 0 Tumebacillus 432330 1 8 3 368 genus 209 species 1903704 Tumebacillus avium 1 0 151 species 0 Tumebacillus algifaecis 1214604 1 genus 359 0 2 1129704 0 Kyrpidia tusciae 33943 1 161 species 1 Kyrpidia sp. EA-1 2055160 0 species 198 25028 family 1 90964 Staphylococcaceae 34 41 0 1 2 2005363 1 Auricoccucs 0 genus 435 0 1 1849491 Auricoccus indicus species 434 0 1279 1 Staphylococcus 33 225 23112 genus 613 species 0 985002 Staphylococcus argenteus 1 species 1484 1 45972 Staphylococcus pasteuri 0 1 Staphylococcus xylosus 1288 0 species 1163 species 277 1 170573 Staphylococcus pettenkoferi 0 species 390 1 Staphylococcus piscifermentans 70258 0 0 61015 Staphylococcus succinus 1 669 species 29382 Staphylococcus cohnii 1 0 573 species 935 species 246432 Staphylococcus equorum 1 0 384 species 0 Staphylococcus lutrae 155085 1 Staphylococcus lugdunensis 28035 1 0 607 species species 743 0 1 Staphylococcus hominis 1290 species 707 1 Staphylococcus nepalensis 214473 0 1 Staphylococcus muscae 1294 0 species 373 605 species Staphylococcus saprophyticus 29385 1 0 species 798 0 1 1296 Staphylococcus sciuri 0 1 1295 Staphylococcus schleiferi species 534 1 1281 Staphylococcus carnosus 0 species 603 species 461 1 1286 Staphylococcus simulans 0 1 Staphylococcus hyicus 1284 0 species 452 0 1 Staphylococcus capitis 29388 species 647 1 Staphylococcus stepanovicii 643214 0 species 778 783 species 0 Staphylococcus haemolyticus 1283 1 91994 1 0 762 no rank species 762 0 1 Staphylococcus sp. AntiMn-1 1715860 species 682 0 1 1292 Staphylococcus warneri 1 Staphylococcus condimenti 70255 0 species 519 0 29384 Staphylococcus kloosii 1 658 species 985762 Staphylococcus agnetis 1 0 467 species 397 species 0 283734 Staphylococcus pseudintermedius 1 species 840 0 1 308354 Staphylococcus simiae 0 Staphylococcus felis 46127 1 557 species 0 1 1280 Staphylococcus aureus species 2235 0 1 1282 Staphylococcus epidermidis species 1191 175 genus 0 45669 1 175 species 0 407035 Salinicoccus halodurans 1 0 4 4 1 Macrococcus 69965 genus 1272 411 species Macrococcus caseolyticus 69966 1 0 species 389 0 1 1855823 Macrococcus canis 1 2619255 0 no rank 468 468 species Macrococcus sp. IME1552 1898474 1 0 0 1 186821 family 174 no rank 174 0 1 663587 0 1 [Bacillus] selenitireducens 85683 species 174 14157 family Paenibacillaceae 1 186822 46 47 0 1 Thermobacillus 76632 1 2 0 156 genus 155 species 0 Thermobacillus composti 377615 1 0 Paenibacillus 1 44249 156 36 11820 genus 233 species 0 Paenibacillus peoriae 59893 1 148 species Paenibacillus stellifer 169760 1 0 0 Paenibacillus kribbensis 172713 1 208 species Paenibacillus odorifer 189426 1 0 324 species species 1119 1 1406 Paenibacillus polymyxa 0 species 271 1 1616788 Paenibacillus bovis 0 species 133 0 1 Paenibacillus sabinae 365617 401 species 0 414771 Paenibacillus donghaensis 1 0 1 Paenibacillus borealis 160799 species 224 2044880 1 0 257 species group 0 483937 Paenibacillus riograndensis 1 257 species 0 1 Paenibacillus durus 44251 species 294 13 185978 0 no rank 3347 species 281 1 Paenibacillus sp. lzh-N1 2069255 0 1536775 Paenibacillus sp. FSL H7-0737 1 0 305 species 175 species Paenibacillus sp. 32O-W 1695218 1 0 0 1 Paenibacillus sp. FSL R7-0331 1536773 species 250 0 1 Paenibacillus sp. JDR-2 324057 species 226 255 species 1536769 Paenibacillus sp. FSL P4-0081 1 0 species 199 1 Paenibacillus sp. FSL R7-0273 1536772 0 239 species 0 Paenibacillus sp. FSL H7-0357 1536774 1 Paenibacillus sp. IHBB 10380 1566358 1 0 492 species species 174 1 1536771 Paenibacillus sp. FSL R5-0912 0 species 287 0 1 1870819 Paenibacillus sp. BIHB4019 199 species 481743 Paenibacillus sp. Y412MC10 1 0 species 265 0 1 1536770 Paenibacillus sp. FSL R5-0345 species 305 0 1 159743 Paenibacillus terrae 0 1 Paenibacillus beijingensis 1126833 species 233 species 159 1 1462996 Paenibacillus yonginensis 0 species 1769 0 1 61624 Paenibacillus mucilaginosus 300 species 528191 Paenibacillus xylanexedens 1 0 1178515 Paenibacillus swuensis 1 0 217 species 166 species 0 Paenibacillus naphthalenovorans 162209 1 species 392 1 Paenibacillus larvae 1464 0 0 1 1870820 Paenibacillus ihbetae species 209 422 species Paenibacillus crassostreae 1763538 1 0 1 Paenibacillus graminis 189425 0 species 533 0 9 4 1 Brevibacillus 55080 genus 1650 Brevibacillus formosus 54913 1 0 252 species 1 Brevibacillus brevis 1393 0 species 477 912 species Brevibacillus laterosporus 1465 1 0 484 no rank 0 85151 3 3 3 55079 Aneurinibacillus 1 0 genus 484 species 228 0 1 1500254 Aneurinibacillus soli no rank 253 1 2642329 0 1450761 Aneurinibacillus sp. XH2 1 0 253 species 0 186818 1 Planococcaceae 27 29 8943 family 663 genus 0 Kurthia 1649 1 2 4 0 1 2644826 no rank 659 Kurthia sp. 11kri321 1750719 1 0 659 species 0 4 3 1 648800 Solibacillus genus 1124 no rank 577 1 2637870 0 0 1 Solibacillus sp. R5-41 2048654 species 577 species 543 1 76853 Solibacillus silvestris 0 2171 genus 0 1 1569 Sporosarcina 12 5 0 2647733 2 481 no rank 1930764 Sporosarcina sp. P33 1 0 233 species species 248 1 1930546 Sporosarcina sp. P37 0 0 Sporosarcina ureae 1571 1 1180 species 498 species 0 1476 Sporosarcina psychrophila 1 1 Jeotgalibacillus 157226 4 2 0 385 genus 381 species Jeotgalibacillus malaysiensis 1508404 1 0 0 2 3 1 648802 Rummeliibacillus genus 475 0 Rummeliibacillus stabekisii 241244 1 472 species genus 4096 0 12 51 1372 Planococcus 1 674 no rank 2662419 2 0 0 2058136 Planococcus sp. MB-3u-03 1 191 species 483 species 1526927 Planococcus sp. PAMC 21323 1 0 species 124 1 200991 Planococcus rifietoensis 0 species 458 1 Planococcus donghaensis 414778 0 species 131 0 1 Planococcus plakortidis 1038856 0 Planococcus maritimus 192421 1 328 species 270 species 0 161360 Planococcus antarcticus 1 495 species 0 1598147 Planococcus faecalis 1 species 546 0 1 1302659 Planococcus sp. L10.15 1215089 Planococcus halocryophilus 1 0 509 species 1374 Planococcus kocurii 1 0 510 species 58183 family 0 1 Bacillaceae 186817 149 118 182709 Oceanobacillus 1 2 3 0 1207 genus 0 Oceanobacillus iheyensis 182710 1 1204 species genus 157 0 2 1 1 351195 Salimicrobium 0 Salimicrobium jeotgali 1230341 1 156 species 2 2675229 0 genus 1185 species 823 1 Bacillus simplex 1478 0 0 1 Bacillus muralis 264697 species 362 311 genus 0 1906945 1 species 311 1 Parageobacillus thermoglucosidasius 1426 0 2308 genus 0 1 129337 Geobacillus 15 95 4 1505648 0 species group 643 107 species 169283 Geobacillus lituanicus 1 0 159 species 0 33938 Geobacillus thermocatenulatus 1 1 Geobacillus thermoleovorans 33941 0 species 284 species 93 1 1462 Geobacillus kaustophilus 0 no rank 911 0 6 2642459 97 species 0 Geobacillus sp. GHH01 1233873 1 Geobacillus sp. C56-T3 691437 1 0 91 species 1 581103 Geobacillus sp. Y4.1MC1 0 species 279 471223 Geobacillus sp. WCH70 1 0 322 species 1 550542 Geobacillus sp. Y412MC52 0 species 70 52 species 544556 Geobacillus sp. Y412MC61 1 0 species 205 1 33940 Geobacillus thermodenitrificans 0 159 species 1921421 Geobacillus genomosp. 3 1 0 species 114 0 1 129338 Geobacillus subterraneus 1 1422 Geobacillus stearothermophilus 0 species 181 1963 genus Anoxybacillus 1 150247 12 6 0 316 species 0 198467 Anoxybacillus gonensis 1 1 33934 Anoxybacillus flavithermus 0 species 539 0 1 Anoxybacillus amylolyticus 294699 species 283 2 2639704 0 no rank 813 1 1490057 Anoxybacillus sp. B7M1 0 species 397 0 1 1490052 Anoxybacillus sp. B2M1 species 416 2860 genus 2675234 5 0 1 Bacillus halodurans 86665 0 species 274 0 Bacillus pseudofirmus 79885 1 697 species 1 Bacillus clausii 79880 0 species 553 species 562 1 Bacillus lehensis 300825 0 774 species 199441 Bacillus krulwichiae 1 0 284 genus 175304 Lentibacillus 1 2 1 0 0 1 Lentibacillus amyloliquefaciens 1472767 species 283 434 genus 1055323 1 Aeribacillus 2 2 0 33936 Aeribacillus pallidus 1 0 432 species 0 1 84406 Virgibacillus 10 7 3982 genus species 843 1 Virgibacillus necropolis 163877 0 0 Virgibacillus halodenitrificans 1482 1 541 species 1356 no rank 2620237 2 0 species 743 1 1911587 Virgibacillus sp. 6R 0 613 species Virgibacillus sp. SK37 403957 1 0 462 species 2017483 Virgibacillus phasianinus 1 0 0 1473 Virgibacillus pantothenticus 1 770 species genus 271 0 2 2 Terribacillus 1 459532 1 Terribacillus aidingensis 586416 0 species 269 15 5 Lysinibacillus 1 400634 0 genus 3569 0 28031 Lysinibacillus fusiformis 1 599 species species 602 1 1145276 Lysinibacillus varians 0 0 1421 Lysinibacillus sphaericus 1 1669 species 0 1 2636778 no rank 684 684 species 2072025 Lysinibacillus sp. YS11 1 0 717 genus 0 45667 2 0 1 1570 Halobacillus halophilus species 332 0 1 402384 Halobacillus mangrovi species 385 0 1 1329200 Fictibacillus 3 10 948 genus 1 Fictibacillus arsenicus 255247 0 species 483 0 1 Fictibacillus phosphorivorans 1221500 species 455 36011 genus 1386 1 Bacillus 58 823 0 0 1547283 Bacillus weihaiensis 1 756 species 0 1 1404 Bacillus megaterium species 1840 0 10 86661 species group 16051 658666 Bacillus bombysepticus 1 0 491 species 0 580165 Bacillus cytotoxicus 1 555 species 0 1 Bacillus mycoides 1405 species 2043 498 species Bacillus anthracis 1392 1 0 5548 species Bacillus cereus 1396 1 0 no rank 1508 3 2750818 0 408 species 1892404 Bacillus sp. ABP14 1 0 2053832 Bacillus sp. HBCD-sjtu 1 0 403 species 697 species Bacillus sp. FDAARGOS_235 1839798 1 0 0 155322 Bacillus toyonensis 1 563 species 0 1 1428 Bacillus thuringiensis species 4845 species 303 1 1664069 Bacillus glycinifermentans 0 332 species 0 Bacillus xiamenensis 1178537 1 species 71 0 1 Bacillus gibsonii 79881 3639 no rank 0 185979 19 0 1856406 Bacillus sp. H15-1 1 150 species 0 1 2049935 Bacillus sp. Lzh-5 species 57 0 1 Bacillus sp. LM 4-2 1628753 species 57 59 species 1409 Bacillus sp. (in: Bacteria) 1 0 627 species Bacillus sp. IHB B 7164 1827146 1 0 79 species 1574141 Bacillus sp. YP1 1 0 species 71 0 1 Bacillus sp. Pc3 1446792 0 Bacillus sp. 1NLA3E 666686 1 639 species 0 1 563169 Bacillus sp. SJ-10 species 78 species 91 1 1127744 Bacillus sp. JS 0 184 species 0 Bacillus sp. FJAT-14266 1837130 1 species 102 1 Bacillus sp. MD-5 2009331 0 species 149 0 1 2026248 Bacillus sp. 1s-1 0 756828 Bacillus sp. WP8 1 371 species 0 1570330 Bacillus sp. BH072 1 26 species Bacillus sp. X1(2014) 1565991 1 0 519 species 1 Bacillus sp. OxB-1 98228 0 species 194 species 113 0 1 Bacillus sp. SDLI1 1774743 0 1 Bacillus sp. 275 1941347 species 73 Bacillus endophyticus 135735 1 0 800 species 1004 species 0 33932 Bacillus cohnii 1 species 591 1 Bacillus flexus 86664 0 species 1529 0 1 Bacillus pumilus 1408 0 Bacillus methanolicus 1471 1 432 species 792 species Bacillus safensis 561879 1 0 1 1398 Bacillus coagulans 0 species 458 415 species Bacillus horikoshii 79883 1 0 species 286 1 1479 Bacillus smithii 0 0 324767 Bacillus infantis 1 181 species 0 1 Bacillus aryabhattai 412384 species 580 1 Bacillus cellulosilyticus 1413 0 species 641 1 632773 Bacillus beveridgei 0 species 240 457 species group 1792192 1 0 293387 Bacillus altitudinis 1 0 457 species 0 653685 9 3790 species group 0 Bacillus atrophaeus 1452 1 328 species 0 1938374 3 1158 species subgroup 1 Bacillus amyloliquefaciens 1390 0 species 522 species 108 0 1 659243 Bacillus siamensis species 528 0 1 Bacillus velezensis 492670 119858 Bacillus sonorensis 1 0 232 species 323 species 1402 Bacillus licheniformis 1 0 species 210 1 1648923 Bacillus paralicheniformis 0 50 species Bacillus vallismortis 72361 1 0 species 1489 0 1 Bacillus subtilis 1423 2675230 2 0 1327 genus 819 species 0 Bacillus kochii 859143 1 species 508 1 Bacillus oceanisediminis 665099 0 500 genus 29331 1 0 500 species 0 1449 Amphibacillus xylanus 1 1446 no rank 0 539002 8 901 no rank 539742 7 0 genus 901 0 38 7 Exiguobacterium 1 33986 species 116 1 Exiguobacterium sibiricum 332410 0 2644629 4 0 634 no rank Exiguobacterium sp. AT1b 360911 1 0 129 species 0 Exiguobacterium sp. MH3 1399115 1 140 species 1224749 Exiguobacterium sp. ZWU0009 1 0 186 species species 179 0 1 Exiguobacterium sp. U13-1 1849031 species 113 1 132920 Exiguobacterium antarcticum 0 no rank 545 1 539738 0 545 genus 0 1378 1 2624949 1 0 545 no rank 545 species 0 Gemella sp. oral taxon 928 1785995 1 family 3929 9 4 1 Listeriaceae 186820 0 Brochothrix 2755 1 6 2 0 511 genus species 505 1 Brochothrix thermosphacta 2756 0 6 39 Listeria 1637 1 0 genus 3414 Listeria welshimeri 1643 1 0 475 species 0 1 1638 Listeria ivanovii species 761 species 406 0 1 1642 Listeria innocua 408 species 1640 Listeria seeligeri 1 0 1 Listeria monocytogenes 1639 0 species 1325 3 186824 0 family 114 0 1 Laceyella 292635 genus 2 0 1 1677050 Novibacillus 5 2 112 genus 0 Novibacillus thermophilus 1471761 1 107 species Lactobacillales 1 186826 155 166 0 52145 order family 7299 20 16 1 Enterococcaceae 81852 0 676 genus 0 1 51668 Tetragenococcus 3 2 673 species 0 Tetragenococcus halophilus 51669 1 Vagococcus 2737 1 5 3 0 918 genus 472 species 0 633807 Vagococcus penaei 1 441 species Vagococcus teuberi 519472 1 0 2 1 1 33969 Melissococcus 0 genus 799 species 798 0 1 33970 Melissococcus plutonius genus 4890 0 39 12 1 Enterococcus 1350 no rank 797 0 3 2608891 0 1 2060307 Enterococcus sp. FDAARGOS_375 species 275 0 Enterococcus sp. CR-Ec1 2057791 1 255 species 0 1 2060306 Enterococcus sp. FDAARGOS_163 species 267 0 1 Enterococcus thailandicus 417368 species 458 1354 Enterococcus hirae 1 0 452 species species 789 0 1 1351 Enterococcus faecalis species 446 0 1 2005703 Enterococcus wangshanyuanii 1 Enterococcus durans 53345 0 species 377 species 774 1 1352 Enterococcus faecium 0 282 species 37734 Enterococcus casseliflavus 1 0 476 species 53346 Enterococcus mundtii 1 0 8 2 Aerococcaceae 1 186827 0 family 1488 Aerococcus 1 1375 7 10 0 1486 genus 1 119206 Aerococcus sanguinicola 0 species 132 0 51665 Aerococcus urinaeequi 1 328 species 1 Aerococcus viridans 1377 0 species 266 279 species 0 Aerococcus christensenii 87541 1 196 species 128944 Aerococcus urinaehominis 1 0 275 species 0 Aerococcus urinae 1376 1 0 49 22 Streptococcaceae 1300 1 family 16890 0 Lactococcus 1 1357 5 13 2832 genus 0 1 Lactococcus raffinolactis 1366 species 237 1832 species 1358 Lactococcus lactis 1 0 0 1363 Lactococcus garvieae 1 485 species 265 species 0 1364 Lactococcus piscium 1 genus 14036 43 171 1301 Streptococcus 1 0 0 1 1313 Streptococcus pneumoniae species 417 0 Streptococcus iniae 1346 1 335 species 0 1 Streptococcus equinus 1335 species 179 2608887 7 0 1341 no rank 391 species Streptococcus sp. 'group B' 1319 1 0 Streptococcus sp. FDAARGOS_192 1839799 1 0 186 species 0 1156431 Streptococcus sp. I-G2 1 139 species species 179 0 1 712633 Streptococcus sp. oral taxon 431 species 132 1 1759399 Streptococcus sp. A12 0 0 1 1156433 Streptococcus sp. I-P16 species 154 species 160 0 1 Streptococcus sp. NPS 308 1902136 218 species 0 82348 Streptococcus pluranimalium 1 736 species 1311 Streptococcus agalactiae 1 0 0 2 119603 species group 744 species 455 0 1 Streptococcus equi 1336 1 Streptococcus dysgalactiae 1334 0 species 289 328 species 0 Streptococcus uberis 1349 1 288 species 0 59310 Streptococcus macedonicus 1 0 Streptococcus parasanguinis 1318 1 230 species species 458 1 102684 Streptococcus infantarius 0 286 species Streptococcus lutetiensis 150055 1 0 species 480 1 1309 Streptococcus mutans 0 1185 species group 0 671232 3 0 1 76860 Streptococcus constellatus species 265 361 species Streptococcus intermedius 1338 1 0 0 Streptococcus anginosus 1328 1 559 species 221 species 0 Streptococcus merionis 400065 1 45634 Streptococcus cristatus 1 0 113 species 0 1 1825069 Streptococcus marmotae species 261 species 268 0 1 Streptococcus pasteurianus 197614 0 1 Streptococcus thermophilus 1308 species 342 0 1 Streptococcus parauberis 1348 species 342 124 species Streptococcus himalayensis 1888195 1 0 612 species 0 Streptococcus gordonii 1302 1 species 153 0 1 Streptococcus pseudopneumoniae 257758 species 277 1 Streptococcus pantholopis 1811193 0 493 species 0 Streptococcus oralis 1303 1 0 1 Streptococcus sanguinis 1305 species 153 315405 Streptococcus gallolyticus 1 0 572 species 0 1304 Streptococcus salivarius 1 673 species species 589 0 1 Streptococcus pyogenes 1314 species 640 0 1 Streptococcus suis 1307 423 species 0 Streptococcus mitis 28037 1 species 222 1 Streptococcus halotolerans 1814128 0 162 species 1326 Streptococcus acidominimus 1 0 0 1 Leuconostocaceae 81850 5 18 4352 family 1317 genus 0 46255 1 Weissella 15 6 0 Weissella koreensis 165096 1 300 species Weissella ceti 759620 1 0 192 species Weissella paramesenteroides 1249 1 0 267 species 0 1 137591 Weissella cibaria species 238 1631871 Weissella jogaejeotgali 1 0 305 species 305 genus 0 Oenococcus 1 46254 2 2 303 species Oenococcus oeni 1247 1 0 genus 2725 0 9 25 Leuconostoc 1 1243 0 Leuconostoc citreum 33964 1 245 species 0 1 1252 Leuconostoc carnosum species 353 157 species 1246 Leuconostoc lactis 1 0 549 species 1244 Leuconostoc gelidum 1 0 species 633 1 Leuconostoc mesenteroides 1245 0 0 Leuconostoc kimchii 136609 1 354 species no rank 293 0 1 2685106 0 1 979982 Leuconostoc sp. C2 species 293 0 Leuconostoc garlicum 255248 1 116 species 0 16 11 1 186828 Carnobacteriaceae family 3467 728 genus 0 1470540 1 Jeotgalibaca 3 9 0 2621505 1 354 no rank Jeotgalibaca sp. PTS2502 1903686 1 0 354 species species 365 0 1 Jeotgalibaca dankookensis 708126 485 genus 0 Marinilactibacillus 1 191769 2 2 483 no rank 0 2632303 1 1 1911586 Marinilactibacillus sp. 15R 0 species 483 0 29 5 Carnobacterium 2747 1 genus 2238 no rank 968 2 257487 0 0 1 Carnobacterium sp. CP1 1564681 species 307 208596 Carnobacterium sp. 17-4 1 0 661 species 525 species 0 Carnobacterium inhibens 147709 1 716 species Carnobacterium maltaromaticum 2751 1 0 0 1 33958 Lactobacillaceae 58 37 18075 family genus 1466 6 2 1253 Pediococcus 1 0 species 227 1 114090 Pediococcus inopinatus 0 species 423 0 1 1255 Pediococcus pentosaceus species 242 0 1 Pediococcus damnosus 51663 197 species group 1670797 1 0 1 Pediococcus acidilactici 1254 0 species 197 375 species 0 Pediococcus claussenii 187452 1 0 2 2767889 genus 598 species 244 0 1 1610 Lactobacillus coryniformis species 354 1 Lactobacillus backii 375175 0 0 2767890 1 261 genus 0 1193095 Lactobacillus hokkaidonensis 1 261 species 0 2767886 3 438 genus 84 species 0 Lactobacillus koreensis 637971 1 species 64 1 Lactobacillus zymae 267363 0 290 species Lactobacillus brevis 1580 1 0 2767885 2 0 707 genus 0 Lactobacillus sakei 1599 1 433 species 0 28038 Lactobacillus curvatus 1 274 species 185 genus 0 2767876 1 species 185 0 1 1603 Lactobacillus amylophilus 0 2767892 1 134 genus 0 1 240427 Lactobacillus paracollinoides species 134 genus 962 3 2759736 0 291 species Lactobacillus rhamnosus 47715 1 0 311 species Lactobacillus paracasei 1597 1 0 species 360 1 1582 Lactobacillus casei 0 2 2767881 0 genus 867 0 1 53444 Lactobacillus lindneri species 515 1 1625 Lactobacillus sanfranciscensis 0 species 352 2767887 4 0 1513 genus 1 89059 Lactobacillus acidipiscis 0 species 282 species 124 1 1623 Lactobacillus ruminis 0 1601 Lactobacillus agilis 1 0 176 species species 931 1 1624 Lactobacillus salivarius 0 5656 genus Lactobacillus 1578 1 16 125 0 293 species 267818 Lactobacillus kefiranofaciens 1 0 920 species 0 1596 Lactobacillus gasseri 1 585 species 0 1587 Lactobacillus helveticus 1 0 1 Lactobacillus amylolyticus 83683 species 218 species 820 1 33959 Lactobacillus johnsonii 0 1 1604 Lactobacillus amylovorus 0 species 422 no rank 668 4 2620435 0 136 species 0 2099789 Lactobacillus sp. CBA3606 1 1 Lactobacillus sp. CBA3605 2099788 0 species 153 110 species 0 Lactobacillus sp. D1501 2108362 1 species 269 0 1 Lactobacillus sp. wkB8 1545702 Lactobacillus gallinarum 52242 1 0 305 species species 385 1 Lactobacillus jensenii 109790 0 0 1 Lactobacillus acidophilus 1579 species 358 species 351 0 1 1584 Lactobacillus delbrueckii Lactobacillus acetotolerans 1600 1 0 206 species genus 2421 0 6 2767879 species 474 1 1847728 Lactobacillus allii 0 301 species 0 1074467 Lactobacillus heilongjiangensis 1 368 species 0 1612 Lactobacillus farciminis 1 species 462 1 392416 Lactobacillus crustorum 0 1007676 Lactobacillus ginsenosidimutans 1 0 419 species 0 1 1602 Lactobacillus alimentarius species 397 983 genus 0 2767842 3 0 Lactobacillus plantarum 1590 1 574 species 0 60520 Lactobacillus paraplantarum 1 166 species species 243 0 1 Lactobacillus pentosus 1589 988 genus 2742598 3 0 0 1613 Lactobacillus fermentum 1 182 species species 695 1 1598 Lactobacillus reuteri 0 97478 Lactobacillus mucosae 1 0 111 species 0 2767893 3 610 genus 203 species 1581 Lactobacillus buchneri 1 0 species 259 1 1138822 Lactobacillus curieae 0 1 152331 Lactobacillus parabuchneri 0 species 148 genus 249 0 1 2767877 249 species Lactobacillus kunkeei 148814 1 0 263855 1 0 419 no rank 0 Lactobacillales bacterium 1993866 1 419 species 121 no rank 0 33974 1 121 genus 0 1930845 1 121 species 0 Ndongobacter massiliensis 1871025 1 100711 class 186801 1 Clostridia 92 200 0 order 12142 0 18 35 68295 1 Thermoanaerobacterales 5662 family 0 Thermoanaerobacteraceae 1 186814 18 23 4547 genus 1754 1 Thermoanaerobacter 214 9 0 0 108150 Thermoanaerobacter italicus 1 577 species species 516 0 1 2325 Thermoanaerobacter kivui species 535 0 1 29323 Thermoanaerobacter brockii species 460 1 583357 Thermoanaerobacter mathranii 0 628 species Thermoanaerobacter wiegelii 46354 1 0 species 535 0 1 496866 Thermoanaerobacter pseudethanolicus 2 2636821 0 no rank 1082 species 527 1 Thermoanaerobacter sp. X514 399726 0 555 species 0 573062 Thermoanaerobacter sp. X513 1 genus 106 0 1 140458 106 species Thermacetogenium phaeum 85874 1 0 0 129957 1 297 genus species 297 1 Carboxydothermus hydrogenoformans 129958 0 0 Caldanaerobacter 249529 1 1 2 420 genus species 419 0 1 Caldanaerobacter subterraneus 911092 269 no rank 0 42857 4 1 44260 Moorella 2 2 0 164 genus Moorella thermoacetica 1525 1 0 162 species 0 1 2 Ammonifex 42837 1 genus 105 species 104 1 Ammonifex degensii 42838 0 0 13 8 Thermoanaerobacterales Family III. Incertae Sedis 1 543371 family 5626 4279 genus 1 44000 Caldicellulosiruptor 9 74 0 species 524 0 1 Caldicellulosiruptor owensensis 55205 species 560 1 Caldicellulosiruptor obsidiansis 717609 0 species 496 1 Caldicellulosiruptor lactoaceticus 52766 0 species 554 0 1 52765 Caldicellulosiruptor kristjanssonii 485 species Caldicellulosiruptor bescii 31899 1 0 0 Caldicellulosiruptor saccharolyticus 44001 1 541 species species 556 1 413889 Caldicellulosiruptor kronotskyensis 0 0 1 413888 Caldicellulosiruptor hydrothermalis species 489 0 1 28895 Thermoanaerobacterium 4 3 1339 genus 1517 Thermoanaerobacterium thermosaccharolyticum 1 0 923 species 29329 Thermoanaerobacterium xylanolyticum 1 0 412 species family 680 0 2 227387 0 1 227388 Thermodesulfobium 3 2 680 genus 1 184064 Thermodesulfobium narugense 0 species 677 0 1 543372 family 156 252965 1 0 156 genus species 156 0 1 252966 Mahella australiensis 0 1 53433 Halanaerobiales 16 11 4541 order Halanaerobiaceae 972 1 8 6 0 2904 family 420 genus Halothermothrix 1 32636 2 15 0 1 31909 Halothermothrix orenii 0 species 405 genus 2476 1 3 Halanaerobium 2330 1 0 2331 Halanaerobium praevalens 1 0 1424 species 1 656519 Halanaerobium hydrogeniformans 0 species 1051 0 4 7 1 Halobacteroidaceae 53434 family 1621 0 2 3 Halobacteroides 42417 1 genus 1014 1 Halobacteroides halobius 42422 0 species 1011 600 genus 28186 1 0 0 Acetohalobium arabaticum 28187 1 600 species 624 order Natranaerobiales 1 485256 4 3 0 family 621 1 3 Natranaerobiaceae 1 485255 0 620 genus Natranaerobius 1 375928 2 2 0 species 618 0 1 Natranaerobius thermophilus 375929 order 590 0 3 2770089 487 family 2770092 2 0 genus 487 0 3 2 Tepidanaerobacter 1 499228 1 499229 Tepidanaerobacter acetatoxydans 0 species 484 2770093 1 0 103 family 1 291988 0 genus 103 species 103 0 1 Thermosediminibacter oceani 291990 Clostridiales 1 186802 214 146 0 82722 order 3062 family 0 2304686 11 Ruminiclostridium 1 1508657 2 3 0 449 genus species 446 0 1 1521 [Clostridium] cellulolyticum 4 2 1 Fastidiosipila 236752 0 genus 456 0 1 Fastidiosipila sanguinis 236753 species 452 2304693 1 0 226 genus 0 84032 [Clostridium] thermosuccinogenes 1 226 species genus 1428 3 2304692 0 0 288965 [Clostridium] clariflavum 1 559 species species 291 1 1515 Ruminiclostridium thermocellum 0 1677857 Herbivorax saccincola 1 0 578 species 2304691 1 0 219 genus 219 species 0 [Clostridium] stercorarium 1510 1 0 2305130 1 131 no rank species 131 1 Ruminiclostridium sp. KB18 1834198 0 153 genus 0 1637257 1 species 153 0 1 Mageeibacillus indolicus 884684 family 171 1 31984 0 171 genus 2697 1 0 species 171 1 Heliobacterium modesticaldum 35701 0 1348 family Ruminococcaceae 1 541000 39 12 0 genus 126 1 253238 0 species 126 1 253239 Ethanoligenens harbinense 0 genus 442 0 3 5 1 1263 Ruminococcus 275 species 0 1160721 Ruminococcus bicirculans 1 Ruminococcus albus 1264 1 0 162 species 1890281 Herbivorax 1 0 2 genus 2 9 1 216851 Faecalibacterium 0 genus 298 289 species Faecalibacterium prausnitzii 853 1 0 133 no rank 0 2305133 1 133 species 1572656 Ruminococcaceae bacterium CPB6 1 0 552397 1 0 114 no rank species 114 0 1 [Clostridium] cellulosi 29343 194 genus 946234 1 Flavonifractor 2 11 0 species 183 0 1 Flavonifractor plautii 292800 979 no rank 0 538999 5 539000 1 0 183 family 73918 1 0 183 genus species 183 0 1 Thermaerobacter marianensis 73919 genus 74 0 1 2717089 74 species 0 Mordavella sp. Marseille-P3756 2086584 1 family 586 0 2 543314 [Eubacterium] sulci 143393 1 0 319 species 1 86331 0 genus 267 0 1 114527 Mogibacterium diversum species 267 0 1 1392389 genus 136 1297617 Intestinimonas butyriciproducens 1 0 136 species 990719 2 0 134 family 134 genus 0 Christensenella 990721 1 2 2 132 species 1805714 Christensenella massiliensis 1 0 Peptococcaceae 1 186807 27 12 0 5560 family 373 genus 0 2282742 1 0 58138 Desulfotomaculum acetoxidans 1 373 species 0 1 51196 genus 228 0 Syntrophobotulus glycolicus 51197 1 228 species 1166 genus 0 Desulfitobacterium 36853 1 23 5 species 244 0 1 Desulfitobacterium dehalogenans 36854 species 267 0 1 Desulfitobacterium hafniense 49338 1 142877 Desulfitobacterium metallireducens 0 species 310 322 species 0 Desulfitobacterium dichloroeliminans 233055 1 genus 320 0 1 51514 Dehalobacterium formicoaceticum 51515 1 0 320 species genus 1328 4 6 79206 1 Desulfosporosinus 0 species 494 0 1 Desulfosporosinus acidiphilus 885581 0 1 Desulfosporosinus meridiei 79209 species 356 Desulfosporosinus orientis 1563 1 0 472 species 146 genus 0 471826 Candidatus Desulforudis 1 2 3 Candidatus Desulforudis audaxviator 471827 1 0 143 species 1 2282740 0 genus 262 262 species 0 Desulfotomaculum gibsoniae 102134 1 215 genus 0 278993 Thermincola 1 2 13 0 Thermincola potens 863643 1 202 species 1 Dehalobacter 56112 4 25 0 461 genus 2635733 2 0 287 no rank 142 species Dehalobacter sp. DCA 1147129 1 0 species 145 1 Dehalobacter sp. CF 1131462 0 species 149 0 1 Dehalobacter restrictus 55583 1049 genus 1 1562 Desulfotomaculum 7 5 0 266 species Desulfotomaculum ferrireducens 1833852 1 0 1565 Desulfotomaculum nigrificans 1 0 232 species 0 Desulfotomaculum reducens 59610 1 339 species species 205 0 1 Desulfotomaculum ruminis 1564 0 10 30 1 186804 Peptostreptococcaceae family 5862 1481960 1 0 180 genus 1 Peptoclostridium acidaminophilum 1731 0 species 180 1 186831 Acetoanaerobium 2 1 0 657 genus 656 species 0 1511 Acetoanaerobium sticklandii 1 574 no rank 1411023 1 0 species 574 0 1 Peptostreptococcaceae bacterium oral taxon 929 2081703 0 44259 1 298 genus 298 species 143361 Filifactor alocis 1 0 1 1849828 Paeniclostridium 2 4 0 1304 genus 1 1505 Paeniclostridium sordellii 0 species 1300 genus 2819 1 2 Clostridioides 1 1870884 0 2818 species 1496 Clostridioides difficile 1 0 0 1 4 68298 1 Syntrophomonadaceae family 502 genus 141 2 2 1 129001 Syntrophothermus 0 139 species 86170 Syntrophothermus lipocalidus 1 0 360 genus 862 1 0 0 1 863 Syntrophomonas wolfei species 360 963 family Eubacteriaceae 1 186806 5 2 0 0 1 1730 Eubacterium 2 1 510 genus 0 1 1736 Eubacterium limosum species 509 2 3 33951 Acetobacterium 1 0 genus 451 0 Acetobacterium woodii 33952 1 448 species 57070 family 31979 1 Clostridiaceae 39 58 0 genus 2003 0 29 4 49082 Candidatus Arthromitus 1 no rank 1974 0 3 2638829 600 species 0 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 1 774 species Candidatus Arthromitus sp. SFB-rat-Yit 1041504 1 0 600 species 49118 Candidatus Arthromitus sp. SFB-mouse 1 0 571 genus 0 390805 1 0 Geosporobacter ferrireducens 1424294 1 571 species genus 1270 0 3 16 114627 1 Alkaliphilus 208226 Alkaliphilus metalliredigens 1 0 721 species 0 1 Alkaliphilus oremlandii 461876 species 533 53168 genus 0 1 1485 Clostridium 30 309 species 1421 0 1 Clostridium tetani 1513 1 1488 Clostridium acetobutylicum 0 species 1159 0 1 Clostridium perfringens 1502 species 2576 species 1453 1 Clostridium chauvoei 46867 0 0 1 Clostridium cochlearium 1494 species 1059 Clostridium autoethanogenum 84023 1 0 1043 species 0 1 Clostridium kluyveri 1534 species 1385 1570 species 0 217159 Clostridium carboxidivorans 1 841 species 0 Clostridium aceticum 84022 1 0 Clostridium butyricum 1492 1 2057 species species 1610 0 1 Clostridium taeniosporum 394958 0 Clostridium scatologenes 1548 1 1734 species 1 1542 Clostridium novyi 0 species 1135 1430 species 0 1216932 Clostridium bornimense 1 species 1371 1 Clostridium cellulovorans 1493 0 0 Clostridium tyrobutyricum 1519 1 909 species 3037 species Clostridium beijerinckii 1520 1 0 1071 species 0 1538 Clostridium ljungdahlii 1 0 1561 Clostridium baratii 1 2645 species 0 Clostridium sporogenes 1509 1 1303 species 0 1 Clostridium argentinense 29341 species 1337 species 838 1 Clostridium formicaceticum 1497 0 2492 species Clostridium pasteurianum 1501 1 0 2274 species 36745 Clostridium saccharoperbutylacetonicum 1 0 1686 species 0 Clostridium saccharobutylicum 169679 1 2614128 2 0 615 no rank 1 Clostridium sp. SY8519 1042156 0 species 104 511 species 0 Clostridium sp. BNL1100 755731 1 species 11556 1 1491 Clostridium botulinum 0 1252 species 0 238834 Clostridium estertheticum 1 231 family 543349 2 0 genus 231 2 1 1 2733 Symbiobacterium 0 species 230 1 Symbiobacterium thermophilum 2734 0 143 family 216572 1 0 1 459786 0 genus 143 0 351091 Oscillibacter valericigenes 1 143 species 0 1 Lachnospiraceae 186803 18 26 6483 family 0 1 2039240 genus 356 species 356 0 1 28446 Anaerotignum propionicum 0 2 3 1 1663717 Herbinix genus 430 species 427 0 1 1679721 Herbinix luporum 0 28050 1 381 genus 0 39485 [Eubacterium] eligens 1 381 species 2569097 1 0 645 genus 645 species 39488 [Eubacterium] hallii 1 0 606 genus 0 1 Blautia 572511 1 3 1322 Blautia hansenii 1 0 347 species 1 2648079 0 no rank 258 258 species 1796616 Blautia sp. YL58 1 0 502 no rank 186928 2 0 [Eubacterium] rectale 39491 1 0 286 species 0 1 712991 Lachnospiraceae bacterium oral taxon 500 species 216 0 Cellulosilyticum 1 698776 2 1 941 genus 0 1 Cellulosilyticum lentocellum 29360 species 940 genus 193 0 1 2719313 [Clostridium] bolteae 208479 1 0 193 species 2 2 1 841 Roseburia 0 genus 141 species 139 0 1 301301 Roseburia hominis 1053 genus 0 1 1506553 Lachnoclostridium 5 4 species 127 1 1871021 Lachnoclostridium phocaeense 0 species 673 1 66219 Lachnoclostridium phytofermentans 0 2608895 1 0 248 no rank species 248 1 1834196 Lachnoclostridium sp. YL32 0 0 3 3 1 Butyrivibrio 830 genus 605 species 334 0 1 Butyrivibrio proteoclasticus 43305 1 Butyrivibrio hungatei 185008 0 species 268 331 genus 0 1 207244 Anaerostipes 2 2 329 species 0 Anaerostipes hadrus 649756 1 genus 281 1 2719231 0 0 1 [Clostridium] saccharolyticum 84030 species 281 4259 class 0 1 Negativicutes 909932 26 10 order 1374 9 14 Veillonellales 1 1843489 0 1360 family 0 31977 1 Veillonellaceae 7 8 2 2 909928 Negativicoccus 1 0 genus 104 102 species 0 1702287 Negativicoccus massiliensis 1 genus 636 6 3 29465 1 Veillonella 0 0 1 29466 Veillonella parvula species 494 136 species 248315 Veillonella rodentium 1 0 genus 195 1 906 0 0 1 907 Megasphaera elsdenii species 195 39948 1 0 418 genus species 418 1 Dialister pneumosintes 39950 0 order 2588 0 13 7 Selenomonadales 1 909929 1209 family 0 1 1843491 Selenomonadaceae 8 4 0 1 158846 genus 543 543 species 0 158847 Megamonas hypermegale 1 genus 662 8 6 970 Selenomonas 1 0 0 2637378 3 352 no rank 0 712538 Selenomonas sp. oral taxon 478 1 136 species 1 1884263 Selenomonas sp. oral taxon 920 0 species 105 0 Selenomonas sp. oral taxon 136 713030 1 111 species 0 Selenomonas sputigena 69823 1 139 species 1 971 Selenomonas ruminantium 0 species 163 1372 family 1 1843490 Sporomusaceae 10 4 0 genus 1362 0 3 7 365348 Pelosinus 1 no rank 702 0 1 2629460 species 702 1 Pelosinus sp. UFO1 484770 0 1 365349 Pelosinus fermentans 0 species 653 287 order 0 1843488 3 0 909930 3 287 family 0 1 3 Acidaminococcus 904 1 genus 287 146 species Acidaminococcus intestini 187327 1 0 0 Acidaminococcus fermentans 905 1 140 species 4509 class Tissierellia 1 1737404 12 18 0 4093 order 1737405 1 Tissierellales 31 15 0 2940 family 0 Peptoniphilaceae 1 1570339 10 11 2 1 1 150022 Finegoldia 0 genus 611 1 Finegoldia magna 1260 0 species 610 0 165779 1 Anaerococcus 3 1 834 genus 1870984 Anaerococcus mediterraneensis 1 0 377 species 456 species Anaerococcus prevotii 33034 1 0 162289 1 0 364 genus 0 2637196 1 364 no rank 0 Peptoniphilus sp. ING2-D1G 1912856 1 364 species 1000 genus 1 543311 Parvimonas 1 2 0 0 33033 Parvimonas micra 1 999 species 0 1 1161127 Murdochiella 1 2 121 genus 1 Murdochiella vaginalis 1852373 0 species 120 1122 family Gottschalkiaceae 1 2042895 2 3 0 1120 genus 0 1 Gottschalkia 1505664 3 2 Gottschalkia acidurici 1556 1 0 1117 species 1737407 2 0 404 no rank genus 404 2 3 1582879 Ezakiella 1 0 401 species Ezakiella massiliensis 1852374 1 0 class 1554 0 2 10 1 Erysipelotrichia 526524 12 9 1 526525 Erysipelotrichales 0 order 1552 0 8 11 128827 1 Erysipelotrichaceae family 1540 0 Turicibacter 191303 1 1 2 500 genus 499 no rank 2638206 1 0 0 1 Turicibacter sp. H121 1712675 species 499 698 genus 0 1647 1 Erysipelothrix 8 3 species 391 0 1 Erysipelothrix larvae 1514105 0 1648 Erysipelothrix rhusiopathiae 1 299 species 1729679 1 0 107 genus 107 species 0 1702221 Faecalibaculum rodentium 1 544447 1 0 224 no rank 0 1 1834207 Erysipelotrichaceae bacterium I46 species 224 84086 1 0 879 no rank 879 species 0 243899 endosymbiont 'TC1' of Trimyema compressum 1 clade 255273 0 378 1783270 0 1 456828 phylum 380 genus 380 0 1 456826 species 380 1 456827 Candidatus Cloacimonas acidaminovorans 0 68336 364 0 253097 clade 0 6 1134404 phylum 1758 class 1758 0 6 7 Ignavibacteria 1 795747 1751 order Ignavibacteriales 1 795748 5 4 0 358 family 0 1334117 2 0 1 Melioribacter 1134403 2 4 358 genus 0 Melioribacter roseus 1134405 1 354 species 0 2 795749 family 1389 1389 genus Ignavibacterium 1 795750 7 2 0 1382 species 0 Ignavibacterium album 591197 1 0 27 336 1 976 Bacteroidetes phylum 248164 0 1 1937959 Saprospiria 1 7 1201 class 1200 order 0 Saprospirales 1 1936988 6 14 634 family 1937961 2 0 0 Haliscomenobacter 1 2349 12 2 634 genus 0 2350 Haliscomenobacter hydrossis 1 622 species family 552 0 2 3 89374 1 Saprospiraceae 0 2 6 Saprospira 1007 1 genus 550 544 species 1008 Saprospira grandis 1 0 12 7 1100069 1 Bacteroidetes Order II. Incertae sedis 0 order 942 930 family Rhodothermaceae 1 563843 8 6 0 3 2 1 Salinibacter 146918 0 genus 306 303 species 0 146919 Salinibacter ruber 1 genus 247 2 4 1 Rhodothermus 29548 0 species 243 1 Rhodothermus marinus 29549 0 0 1 1196022 no rank 369 species 369 1 Rhodothermaceae bacterium RA 1779382 0 0 Bacteroidia 1 200643 70 27 14394 class order 11075 57 27 1 Bacteroidales 171549 0 0 1853231 2 276 family genus 276 0 2 5 Odoribacter 1 283168 0 1 28118 Odoribacter splanchnicus species 271 2005523 1 0 460 family 0 1 346096 genus 460 460 species 0 Paludibacter propionicigenes 185300 1 family 401 0 4 4 1 Porphyromonadaceae 171551 0 7 3 836 Porphyromonas 1 genus 397 0 837 Porphyromonas gingivalis 1 278 species 1 28123 Porphyromonas asaccharolytica 0 species 112 family 387 0 5 3 1 171550 Rikenellaceae 0 1 Mucinivorans 1611681 3 2 195 genus 1 1433126 Mucinivorans hirudinis 0 species 192 2 1 Alistipes 1 239759 0 genus 189 species 188 1 214856 Alistipes finegoldii 0 0 333046 5 1978 no rank 3 909656 0 genus 744 species 278 0 1 821 Bacteroides vulgatus 0 1 Bacteroides dorei 357276 species 312 species 154 0 1 376805 Bacteroides salanitronis 1234 genus Candidatus Azobacteroides 511434 1 1 2 0 0 511435 Candidatus Azobacteroides pseudotrichonymphae 1 1233 species family 869 0 7 1 1 2005525 Tannerellaceae 478 genus 0 1 375288 Parabacteroides 7 3 0 2649774 1 251 no rank 2025876 Parabacteroides sp. CT06 1 0 251 species 220 species 0 823 Parabacteroides distasonis 1 1 Tannerella 195950 4 3 0 390 genus no rank 152 0 1 2620507 1 712710 Tannerella sp. oral taxon HOT-286 0 species 152 28112 Tannerella forsythia 1 0 234 species 2 2005519 0 family 150 2 1 397864 Barnesiella 1 0 genus 150 149 species 0 Barnesiella viscericola 397865 1 no rank 257 1 185291 0 0 1 1400053 Bacteroidales bacterium CF species 257 0 2 7 2005520 1 Dysgonamonadaceae family 1159 2 2 294702 Proteiniphilum 1 0 genus 220 0 Proteiniphilum saccharofermentans 1642647 1 218 species 155 genus 0 Petrimonas 1 307628 2 2 1 1642646 Petrimonas mucosa 0 species 153 0 2 8 1 1784836 Fermentimonas genus 782 species 774 0 1 Fermentimonas caenicola 1562970 2790 family 1 Bacteroidaceae 815 11 3 0 2787 genus 0 816 Bacteroides 1 10 24 312 species 0 28116 Bacteroides ovatus 1 Bacteroides fragilis 817 1 0 627 species 0 Bacteroides caecimuris 1796613 1 291 species 0 Bacteroides caccae 47678 1 263 species 0 1 28119 Bacteroides zoogleoformans species 155 0 1 Bacteroides helcogenes 290053 species 236 352 species 246787 Bacteroides cellulosilyticus 1 0 141 species 28113 Bacteroides heparinolyticus 1 0 0 1 818 Bacteroides thetaiotaomicron species 386 0 11 1 1 Prevotellaceae 171552 family 2321 2320 genus Prevotella 838 1 27 10 0 1177574 Prevotella jejuni 1 0 214 species Prevotella melaninogenica 28132 1 0 204 species species 265 1 Prevotella fusca 589436 0 1 2638335 0 no rank 385 species 385 1 652716 Prevotella sp. oral taxon 299 0 0 Prevotella ruminicola 839 1 178 species 1 28131 Prevotella intermedia 0 species 647 species 153 1 Prevotella dentalis 52227 0 98 species 0 Prevotella denticola 28129 1 species 149 1 76123 Prevotella enoeca 0 order 3292 0 14 12 1 1970189 Marinilabiliales 0 1 1970190 Salinivirgaceae 4 3 644 family genus 640 0 7 2 1 Salinivirga 1970191 0 Salinivirga cyanobacteriivorans 1307839 1 633 species Marinilabiliaceae 558415 1 4 3 0 670 family 1193324 1 Alkalitalea 2 10 0 666 genus 656 species 0 Alkalitalea saponilacus 889453 1 4 3 1471398 1 Prolixibacteraceae 0 family 644 genus 640 2 17 1 1471399 Draconibacterium 0 0 1 1168034 Draconibacterium orientale species 623 1320 family 0 1573805 1 Marinifilaceae 2 4 genus 1316 0 1 2060722 1717717 Marinifilaceae bacterium SPP2 1 0 1316 species 768503 1 Cytophagia 41 62 0 20595 class 768507 1 Cytophagales 61 68 0 20554 order 0 1 200667 Flammeovirgaceae 4 4 2117 family 0 2 10 1 Flammeovirga 59739 genus 1357 no rank 1347 1 2637820 0 species 1347 0 1 1191459 Flammeovirga sp. MY04 756 no rank 0 340671 1 1 Flammeovirgaceae bacterium 311 1257021 0 species 756 898 family 0 1 1853234 Persicobacteraceae 2 3 2 7 59740 1 Persicobacter 0 genus 896 1 2664020 0 no rank 889 1085624 Persicobacter sp. JZB09 1 0 889 species family 3875 0 18 16 1853232 1 Hymenobacteraceae 1 Rufibacter 1379908 17 4 0 860 genus no rank 511 0 2 2639626 1 Rufibacter sp. DG15C 1379909 0 species 252 species 259 1 1379910 Rufibacter sp. DG31D 0 512763 Rufibacter tibetensis 1 0 332 species genus 650 11 3 323449 Pontibacter 1 0 1 Pontibacter korlensis 400092 0 species 400 1 388950 Pontibacter akesuensis 0 species 239 8 49 1 89966 Hymenobacter 0 genus 2347 1570 no rank 0 2615202 5 202 species 0 1385664 Hymenobacter sp. DG25B 1 0 Hymenobacter sp. APR13 1356852 1 342 species 1 1484118 Hymenobacter sp. PAMC 26628 0 species 374 species 460 1 Hymenobacter sp. PAMC 26554 1484116 0 species 192 0 1 Hymenobacter sp. DG25A 1385663 species 297 1 1411621 Hymenobacter sedentarius 0 species 431 1 1446467 Hymenobacter swuensis 0 0 2762301 2 1661 family 1661 genus 1 Marivirga 869806 9 2 0 species 1652 1 Marivirga tractuosa 1006 0 4864 family 1 563798 Cyclobacteriaceae 10 6 0 genus 780 2 8 246875 1 Algoriphagus 0 0 1 Algoriphagus sp. M8-2 1727163 species 772 0 1 Belliella 232244 2 15 1299 genus 0 232259 Belliella baltica 1 1284 species genus 2243 3 20 68288 1 Cyclobacterium 0 Cyclobacterium marinum 104 1 0 1109 species 1114 species 0 Cyclobacterium amurskyense 320787 1 536 genus 1 Echinicola 390846 11 2 0 390884 Echinicola vietnamensis 1 0 525 species 0 89373 1 Cytophagaceae 17 10 3858 family 0 Runella 1 105 11 2 454 genus 1 Runella slithyformis 106 0 species 443 0 3 2 Leadbetterella 1 319458 genus 593 590 species 316068 Leadbetterella byssophila 1 0 2 1 120831 1 Dyadobacter 0 genus 288 1 94254 Dyadobacter fermentans 0 species 287 0 107 1 Spirosoma 6 15 1495 genus 0 1 1178516 Spirosoma montaniterrae species 208 300 species 0 Spirosoma aerolatum 1211326 1 564064 Spirosoma rigui 1 0 198 species 0 1 Spirosoma sp. HA7 2057025 species 478 species 296 0 1 Spirosoma radiotolerans 1379870 229 genus 861914 1 Fibrella 2 2 0 2620963 1 0 227 no rank Fibrella sp. ES10-3-2-2 1834519 1 0 227 species 789 genus 0 978 Cytophaga 1 2 20 769 species 0 Cytophaga hutchinsonii 985 1 844 family Amoebophilaceae 1 1501348 5 2 0 Candidatus Amoebophilus 1 281119 2 3 0 558 genus 1 Candidatus Amoebophilus asiaticus 281120 0 species 555 0 2 3 1 273135 Candidatus Cardinium genus 284 281 no rank 0 2641185 1 species 281 1 Cardinium endosymbiont of Encarsia pergandiella 249402 0 2369 family 1 Bernardetiaceae 1937968 3 3 0 1937972 1 Bernardetia 12 2 0 2366 genus 0 1 999 Bernardetia litoralis species 2354 0 1 Sphingobacteriia 117747 17 24 13458 class 13441 order Sphingobacteriales 1 200666 23 27 0 0 84566 1 Sphingobacteriaceae 41 22 13414 family 0 84568 1 1002 no rank species 1002 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 0 genus 3629 26 6 28453 1 Sphingobacterium 0 567 species 1010 Sphingobacterium mizutaii 1 0 no rank 3036 4 2609468 0 0 1 1538644 Sphingobacterium sp. ML3W species 958 0 Sphingobacterium sp. B29 1933220 1 766 species Sphingobacterium sp. 21 743722 1 0 574 species 0 1 2003121 Sphingobacterium sp. G1-14 species 738 0 Pseudopedobacter 1 1649482 10 2 958 genus 0 1 Pseudopedobacter saltans 151895 species 948 2 10 1 Solitalea 929509 0 genus 1056 1 Solitalea canadensis 995 0 species 1046 0 56 6 1 Pedobacter 84567 genus 5071 Pedobacter steynii 430522 1 0 711 species 0 1 2628915 no rank 1553 0 1727164 Pedobacter sp. PACM 27299 1 1553 species species 1031 0 1 188932 Pedobacter cryoconitis 1119 species 0 363852 Pedobacter ginsengisoli 1 984 Pedobacter heparinus 1 0 601 species 423349 Mucilaginibacter 1 4 6 0 1657 genus species 515 1 Mucilaginibacter sp. BJC16-A31 1234841 0 0 1 1550579 Mucilaginibacter gotjawali species 678 no rank 458 1 2617802 0 1 Mucilaginibacter sp. PAMC 26640 1300914 0 species 458 9 17 1853228 1 Chitinophagia 0 class 4021 order 4012 0 7 16 1 Chitinophagales 1853229 family 4005 0 19 15 1 563835 Chitinophagaceae 0 2 2 1 354354 Niastella genus 674 672 species 0 Niastella koreensis 354356 1 0 Niabella 379899 1 11 3 700 genus 323 species 1176587 Niabella ginsenosidivorans 1 0 species 366 0 1 Niabella soli 446683 0 398041 Flavisolibacter 1 2 2 999 genus 0 1 1492898 Flavisolibacter tropicus species 997 4 2 1769012 1 Arachidicoccus 0 genus 348 0 1 2636138 no rank 344 0 Arachidicoccus sp. BS20 1850526 1 344 species 4 3 Chitinophaga 1 79328 0 genus 778 0 79329 Chitinophaga pinensis 1 378 species 1 Chitinophagaceae bacterium 13 2029983 0 species 396 0 1 2 Filimonas 1 649460 genus 487 species 486 1 477680 Filimonas lacunae 0 193526 class 0 117743 1 Flavobacteriia 108 148 193418 order 1 Flavobacteriales 200644 147 181 0 0 Flavobacteriaceae 1 49546 855 103 163732 family 1 336276 0 genus 2827 2615019 1 0 2827 no rank species 2827 1 Olleya sp. Bg11-27 2058135 0 6690 genus 0 1 225842 Formosa 3 22 6668 no rank 2644710 2 0 species 2855 0 1 Formosa sp. Hel3_A1_48 1336795 1 1336794 Formosa sp. Hel1_33_131 0 species 3813 326319 1 Dokdonia 4 63 0 4594 genus 2615033 2 0 2930 no rank 1543 species 983548 Dokdonia sp. 4H-3-7-5 1 0 0 313590 Dokdonia sp. MED134 1 1387 species species 1601 0 1 326320 Dokdonia donghaensis 1927 genus Zunongwangia 1 417127 1 2 0 1 398743 Zunongwangia profunda 0 species 1926 0 52959 1 Polaribacter 113 6 18980 genus 4025 species 996801 Polaribacter reichenbachii 1 0 0 1 Polaribacter vadi 1774273 species 4300 10542 no rank 0 196858 3 3226 species Polaribacter sp. ALD11 2058137 1 0 3678 species 0 Polaribacter sp. MED152 313598 1 0 Polaribacter sp. BM10 1529069 1 3638 species 1 2700084 0 genus 3993 3993 species 0 Lutibacter sp. LPB0138 1850246 1 genus 1779 1 153265 0 0 1 101385 Aequorivita sublithincola species 1779 0 393005 1 2196 genus 1 Tamlana sp. UJ94 2069432 0 species 2196 252356 Maribacter 1 5 40 0 7451 genus 6312 no rank 0 2615042 3 species 1795 1 313603 Maribacter sp. HTCC2170 0 species 1952 1 Maribacter sp. 1_2014MBL_MicDiv 1644130 0 Maribacter sp. T28 1836467 1 0 2565 species 0 1 Maribacter cobaltidurans 1178778 species 1099 5 42 1 292691 Gramella 0 genus 4869 1009 species Gramella sp. SH35 2126553 1 0 1237 species 0 1913577 Gramella sp. LPB0144 1 Gramella forsetii 411153 1 0 1824 species species 757 0 1 1486245 Gramella flava 4 130 Lacinutrix 1 291183 0 genus 9950 0 Lacinutrix venerupis 1486034 1 3278 species 6542 no rank 2647285 2 0 3244 species Lacinutrix sp. 5H-3-7-4 983544 1 0 3298 species 0 Lacinutrix sp. Bg11-31 2057808 1 0 363408 1 Nonlabens 5 57 6797 genus species 1780 1 Nonlabens sediminis 319236 0 2 2615035 0 no rank 3244 0 1 2058134 Nonlabens sp. MB-3u-79 species 1498 1 1476901 Nonlabens sp. MIC269 0 species 1746 328515 Nonlabens dokdonensis 1 0 1716 species 0 19 2 358023 Lutibacter 1 genus 3454 3435 species Lutibacter profundi 1622118 1 0 genus 942 1 1176327 0 no rank 942 0 1 2636237 942 species 0 2094025 Aureitalea sp. RR4-38 1 4560 genus Myroides 76831 1 5 72 0 species 1127 1 Myroides odoratimimus 76832 0 1124 species 0 Myroides profundi 480520 1 no rank 2237 0 2 2642485 1 Myroides sp. ZB35 1458492 0 species 1134 1 Myroides sp. A21 1583100 0 species 1103 genus 2941 2 5 1 Wenyingzhuangia 1518147 0 2936 species 0 Wenyingzhuangia fucanilytica 1790137 1 1 389486 0 genus 1282 no rank 1282 1 2648869 0 species 1282 0 1 Sediminicola sp. YIK13 1453352 0 112040 1 790 genus 0 63186 Zobellia galactanivorans 1 790 species genus 3217 0 1 261827 0 1 Algibacter alginicilyticus 1736674 species 3217 1 1204360 0 genus 2521 2521 species Siansivirga zeaxanthinifaciens 762954 1 0 1191 genus 0 178469 1 616991 Arenibacter algicola 1 0 1191 species 3031 genus 0 1649495 1 0 1 2622645 no rank 3031 species 3031 1 1936081 Seonamhaeicola sp. S2-3 0 genus 17949 9 46 237 Flavobacterium 1 0 1 Flavobacterium psychrophilum 96345 0 species 1630 species 1435 1 1763534 Flavobacterium crassostreae 0 Flavobacterium commune 1306519 1 0 1654 species species 3597 0 1 Flavobacterium columnare 996 1492737 Flavobacterium gilvum 1 0 1596 species 3925 species 986 Flavobacterium johnsoniae 1 0 0 1 Flavobacterium indicum 312277 species 2487 1579 species 55197 Flavobacterium branchiophilum 1 0 0 61432 2 2987 no rank species 424 1 Flavobacteriaceae bacterium 3519-10 531844 0 1 Flavobacteriaceae bacterium UJ101 1150389 0 species 2563 1643 genus 0 Salegentibacter 143222 1 2 1 no rank 1642 1 2633436 0 0 1 Salegentibacter sp. T436 1729720 species 1642 genus 1328 0 10 3 1 111500 Muricauda 0 1 Muricauda ruestringensis 111501 species 897 421 species 0 516051 Muricauda lutaonensis 1 genus 8920 15 111 1016 1 Capnocytophaga 0 3533 no rank 0 2640652 6 1 Capnocytophaga sp. oral taxon 864 1316593 0 species 432 species 877 1 Capnocytophaga sp. H4358 1945658 0 species 810 1 Capnocytophaga sp. H2931 1945657 0 species 583 0 1 1316596 Capnocytophaga sp. oral taxon 878 1 1705617 Capnocytophaga sp. oral taxon 323 0 species 354 1 209053 Capnocytophaga sp. ChDC OS43 0 species 477 1 Capnocytophaga canimorsus 28188 0 species 1202 species 359 0 1 1018 Capnocytophaga ochracea 0 Capnocytophaga sputigena 1019 1 874 species species 440 0 1 327575 Capnocytophaga leadbetteri 0 1017 Capnocytophaga gingivalis 1 435 species 0 1 Capnocytophaga stomatis 1848904 species 679 0 28189 Capnocytophaga cynodegmi 1 939 species 0 1 45243 Capnocytophaga haemolytica species 348 2501 genus 1209327 1 0 2501 species 1803846 Flavivirga eckloniae 1 0 genus 11967 30 5 Tenacibaculum 1 104267 0 species 3190 0 1 1850252 Tenacibaculum todarodis 1 Tenacibaculum jejuense 584609 0 species 3647 1 Tenacibaculum maritimum 107401 0 species 2541 Tenacibaculum dicentrarchi 669041 1 0 2559 species 1981 genus 0 1 Psychroflexus 83612 2 3 1978 species 0 57029 Psychroflexus torquis 1 249 genus 0 252306 1 0 252307 Robiginitalea biformata 1 249 species genus 5941 3 34 1 Winogradskyella 286104 0 2615021 2 0 5907 no rank 2324 species 1936080 Winogradskyella sp. J14-2 1 0 754409 Winogradskyella sp. PG-2 1 0 3583 species 54 4 1 Cellulophaga 104264 0 genus 8995 species 3014 0 1 Cellulophaga baltica 76594 0 1 979 Cellulophaga lytica species 3061 2866 species 59600 Cellulophaga algicola 1 0 genus 2434 0 1 216431 0 Croceibacter atlanticus 313588 1 2434 species 0 3 1 1 1853230 Crocinitomicaceae family 1277 genus 1276 0 2 5 Fluviicola 1 332102 species 1271 1 Fluviicola taffensis 191579 0 0 2 1333713 family 1268 1268 genus 0 267986 1 Owenweeksia 2 35 species 1233 0 1 Owenweeksia hongkongensis 253245 family 18042 0 20 2762318 0 34084 1 1684 genus species 1684 1 Riemerella anatipestifer 34085 0 0 6 64 1 308865 Elizabethkingia genus 6353 0 1 Elizabethkingia meningoseptica 238 species 780 species 1381 0 1 172045 Elizabethkingia miricola Elizabethkingia genomosp. 4 1756150 1 0 867 species 0 Elizabethkingia anophelis 1117645 1 2257 species species 1004 0 1 Elizabethkingia genomosp. 3 1756149 0 2 1 1 28250 Ornithobacterium genus 690 species 689 0 1 Ornithobacterium rhinotracheale 28251 2782232 10 0 8462 no rank 8014 genus 0 1 Chryseobacterium 59732 9 57 species 1021 0 1 558152 Chryseobacterium piperi species 1562 0 1 Chryseobacterium indologenes 253 species 378 0 1 Chryseobacterium camelliae 1265445 3042 no rank 2593645 3 0 species 1152 0 1 Chryseobacterium sp. T16E-39 2015076 1 878220 Chryseobacterium sp. StRB126 0 species 1133 species 757 1 1721091 Chryseobacterium sp. IHB B 17019 0 species 1283 0 1 1685010 Chryseobacterium glaciei 0 1 1324352 Chryseobacterium gallinarum species 671 448 genus 2782228 1 0 536441 Chryseobacterium taklimakanense 1 0 448 species 1 1013 0 genus 853 853 species Weeksella virosa 1014 1 0 10 1 1 Blattabacteriaceae 39782 0 family 6429 0 9 78 Blattabacterium 1 34098 genus 6428 no rank 4561 6 2647581 0 0 1 Blattabacterium sp. (Periplaneta americana) 367488 species 756 0 1 39768 Blattabacterium sp. (Mastotermes darwiniensis) species 721 1 Blattabacterium sp. (Blaberus giganteus) 1186051 0 species 788 753 species Blattabacterium sp. (Blattella germanica) 624186 1 0 species 748 1 1316444 Blattabacterium sp. (Nauphoeta cinerea) 0 795 species 0 Blattabacterium sp. (Blatta orientalis) 367806 1 0 1 1653831 Blattabacterium cuenoti species 811 0 1 Blattabacterium punctulatus 164514 species 978 1 family 0 246874 Cryomorphaceae 1 979 family 0 1 1755828 Ichthyobacteriaceae 2 3 28 2 1 1755829 Ichthyobacterium 0 genus 977 949 species 0 Ichthyobacterium seriolicida 242600 1 4 313602 0 no rank 1509 325 genus 0 1 1940138 Candidatus Walczuchella 2 6 1 1415657 Candidatus Walczuchella monophlebidarum 0 species 319 0 2 6 Candidatus Sulcia 1 336809 genus 1184 species 1178 1 Candidatus Sulcia muelleri 336810 0 3175 phylum 0 1090 22 3175 class 1 191410 Chlorobia 22 18 0 0 Chlorobiales 1 191411 21 32 3157 order 0 191412 1 Chlorobiaceae 20 41 3125 family 0 43 5 1101 Prosthecochloris 1 genus 650 1102 Prosthecochloris aestuarii 1 0 187 species 0 3 2632826 no rank 420 161 species 1974213 Prosthecochloris sp. HL-130-GSB 1 0 0 1868325 Prosthecochloris sp. CIB 2401 1 128 species species 131 0 1 Prosthecochloris sp. GSB1 281093 genus 329 0 3 2 100715 1 Chloroherpeton 0 100716 Chloroherpeton thalassium 1 326 species 1591 no rank 274493 8 0 genus 371 3 22 1099 1 Pelodictyon 0 1 1100 Pelodictyon luteolum 0 species 127 34090 Pelodictyon phaeoclathratiforme 1 0 222 species 0 1 1091 Chlorobium 5 26 1220 genus species 418 1 Chlorobium chlorochromatii 337090 0 0 1 1094 Chlorobium phaeovibrioides species 153 146 species 0 Chlorobium limicola 1092 1 species 477 0 1 1096 Chlorobium phaeobacteroides 1 Chlorobaculum 256319 51 4 0 514 genus 0 Chlorobaculum parvum 274539 1 161 species 172 species 0 274537 Chlorobaculum limnaeum 1 130 species Chlorobaculum tepidum 1097 1 0 371 phylum 65842 5 0 Fibrobacteria 1 204430 3 5 0 371 class order 368 0 4 2 1 218872 Fibrobacterales 1 204431 Fibrobacteraceae 3 1 0 366 family 0 1 832 Fibrobacter 2 2 365 genus species 363 1 Fibrobacter succinogenes 833 0 0 142182 8 1425 phylum 1 219685 Gemmatimonadetes 8 3 0 1425 class 1422 order 1 219686 Gemmatimonadales 20 7 0 Gemmatimonadaceae 1 219687 6 9 0 1402 family genus 972 8 2 Gemmatirosa 1 1706036 0 1 861299 Gemmatirosa kalamazoonesis 0 species 964 6 3 Gemmatimonas 173479 1 0 genus 421 species 206 0 1 173480 Gemmatimonas aurantiaca Gemmatimonas phototrophica 1379270 1 0 209 species 40117 14 0 2221 phylum class 2221 0 14 10 1 203693 Nitrospira 2211 order 0 1 Nitrospirales 189778 13 44 0 12 12 1 189779 Nitrospiraceae family 2167 genus 586 0 7 5 1 1234 Nitrospira 0 1 1715989 Candidatus Nitrospira inopinata species 142 Nitrospira defluvii 330214 1 0 124 species 0 1 42253 Nitrospira moscoviensis species 184 0 Nitrospira japonica 1325564 1 129 species 2 2 Thermodesulfovibrio 1 28261 0 genus 946 species 944 1 Thermodesulfovibrio yellowstonii 28262 0 genus 623 25 4 179 1 Leptospirillum 0 185 species group 0 261386 1 species 185 0 1 Leptospirillum ferriphilum 178606 species group 162 1 261385 0 1 1660083 Leptospirillum sp. Group II 'CF-1' 0 species 162 655606 1 0 251 species group species 251 1 180 Leptospirillum ferrooxidans 0 clade 15815 91 1783257 0 1 Verrucomicrobia 74201 27 25 0 4717 phylum class 148 0 2 134549 genus 148 2 4 134550 Candidatus Xiphinematobacter 1 0 2648876 1 0 144 no rank 1704307 Candidatus Xiphinematobacter sp. Idaho Grape 1 0 144 species class 443 4 6 Verrucomicrobiae 1 203494 0 48461 Verrucomicrobiales 1 18 5 0 439 order family 421 0 4 9 1 1647988 Akkermansiaceae 3 13 Akkermansia 239934 1 0 genus 412 0 1 239935 Akkermansia muciniphila species 175 224 species 1679444 Akkermansia glycaniphila 1 0 0 417295 2 978 no rank 1 Verrucomicrobia bacterium IMCC26134 1637999 0 species 457 521 species 0 Verrucomicrobia bacterium 2026799 1 0 414999 1 Opitutae 10 10 2529 class 415001 2 0 1007 order 2 415002 0 family 1007 genus 1007 2 8 1 Coraliomargarita 442430 0 species 999 0 1 395922 Coraliomargarita akajimensis 0 415000 1 Opitutales 5 7 1512 order Opitutaceae 1 134623 5 6 0 1507 family 565 no rank 278955 1 0 species 565 0 1 794903 Opitutaceae bacterium TAV5 1 178440 Opitutus 2 2 0 473 genus 471 species 0 Opitutus terrae 107709 1 0 2 3 Lacunisphaera 1 1961799 genus 464 461 species 1838286 Lacunisphaera limnophila 1 0 class 592 0 4 1955630 order 592 0 1 4 1 717963 Methylacidiphilales family 591 3 717964 0 genus 591 0 1 3 1 Methylacidiphilum 511745 384 species Methylacidiphilum fumariolicum 591154 1 0 1 511746 Methylacidiphilum infernorum 0 species 206 21 204428 0 phylum 3507 Chlamydiia 1 204429 10 21 0 3507 class order 2309 14 12 1 51291 Chlamydiales 0 0 1 Chlamydiaceae 809 3 13 2297 family 12 1113537 0 no rank 2294 Chlamydia 810 1 12 35 0 2294 genus 0 1 Chlamydia trachomatis 813 species 197 0 1 85991 Chlamydia pecorum species 179 species 277 0 1 Chlamydia psittaci 83554 1 Chlamydia felis 83556 0 species 230 species 106 0 1 83559 Chlamydia suis species 222 0 1 1457141 Chlamydia avium 179 species 83557 Chlamydia caviae 1 0 species 230 0 1 1457153 Chlamydia gallinacea 293 species 0 Chlamydia pneumoniae 83558 1 1 Chlamydia muridarum 83560 0 species 167 1 83555 Chlamydia abortus 0 species 179 order 1188 6 10 Parachlamydiales 1 1963360 0 family 661 2 3 1 Parachlamydiaceae 92713 0 83551 1 0 380 genus 0 1 Parachlamydia acanthamoebae 83552 species 380 genus 279 1 282132 0 species 279 0 1 389348 Candidatus Protochlamydia naegleriophila 275 family 0 92714 1 1 71666 0 genus 275 Waddlia chondrophila 71667 1 0 275 species family 242 0 1 92712 genus 242 1 34093 0 242 species 0 83561 Simkania negevensis 1 6999 phylum 0 Planctomycetes 1 203682 37 1 1342 class 0 666505 1 Phycisphaerae 6 6 405 order 2483366 2 0 405 family 0 2483367 2 0 2483368 2 405 genus species 203 1 Phycisphaerae bacterium L21-RPul-D3 1940790 0 202 species 0 1941349 Phycisphaerae bacterium ST-PulAB-D4 1 0 Phycisphaerales 1 666506 3 18 931 order 913 family 666507 2 0 genus 913 7 2 666508 1 Phycisphaera 0 906 species 0 Phycisphaera mikurensis 547188 1 203683 1 Planctomycetia 8 27 0 5198 class order 2147 11 90 112 Planctomycetales 1 0 family 2057 0 43 10 Planctomycetaceae 1 126 Rubinisphaera 1 1649490 9 2 0 408 genus 399 species 119 Rubinisphaera brasiliensis 1 0 genus 280 0 1 2 Planctopirus 1 1649480 0 Planctopirus limnophila 120 1 279 species genus 467 0 2 5 1936111 1 Fuerstia 1891926 Fuerstia marisgermanicae 1 0 462 species 118 1 Planctomyces 24 3 0 859 genus no rank 835 2 2648843 0 0 Planctomyces sp. SH-PL14 1632864 1 333 species 1 1636152 Planctomyces sp. SH-PL62 0 species 502 order 387 0 3 2691355 family 387 3 4 1 1914233 Gemmataceae 0 1 Gemmata 113 30 2 0 383 genus 2622970 1 0 353 no rank 353 species Gemmata sp. SH-PL17 1630693 1 0 0 2691356 7 1353 order 21 7 Isosphaeraceae 1 1763524 0 family 1353 genus 470 2 4 Paludisphaera 1 1763521 0 0 1 1387353 Paludisphaera borealis species 466 0 2 18 127 Isosphaera 1 genus 318 0 1 128 Isosphaera pallida species 300 544 genus 0 466152 Singulisphaera 1 20 2 species 524 0 1 466153 Singulisphaera acidiphila 1303 order 0 2691354 5 family 1025 3 2691357 0 genus 540 1 123 0 species 540 0 1 125 Pirellula staleyi 485 genus 0 Rhodopirellula 265488 1 2 10 475 species 0 265606 Rhodopirellula baltica 1 278 family 2691358 2 0 genus 278 0 5 2 1676125 1 Thermogutta species 273 0 1 1331910 Thermogutta terrifontis 0 3 2517206 class 458 9 3 1 Candidatus Brocadiales 1127829 0 order 458 0 2 1127830 family 449 genus 449 0 1 2 380738 1 Candidatus Kuenenia 448 species 0 174633 Candidatus Kuenenia stuttgartiensis 1 134625 5 0 266 phylum class 266 0 5 5 1 Kiritimatiellae 1921781 1921782 1 Kiritimatiellales 17 4 0 261 order family 244 3 2 Kiritimatiellaceae 1 1921783 0 0 1 Kiritimatiella 1921784 2 4 242 genus 0 Kiritimatiella glycovorans 1307763 1 238 species 0 256845 3 326 phylum 3 23 1 1313211 Lentisphaeria 0 class 326 2 5 Victivallales 278082 1 0 order 303 1674876 1 0 298 no rank 298 species 0 2094242 Victivallales bacterium CCUG 44730 1 1 Proteobacteria 1224 218 2028 0 1840104 phylum 1 1236 Gammaproteobacteria 895 830 0 497309 class 1692040 1 Acidiferrobacterales 17 6 0 895 order 0 10 5 1 Acidiferrobacteraceae 1692041 family 878 0 14 2 1744881 1 Sulfuricaulis genus 366 0 Sulfuricaulis limicola 1620215 1 352 species 1 1692042 Sulfurifustis 2 7 0 502 genus 495 species 1675686 Sulfurifustis variabilis 1 0 840 no rank 0 33811 2 species 387 1 1248727 endosymbiont of unidentified scaly snail isolate Monju 0 species 453 0 1 gamma proteobacterium HdN1 83406 31661 order 1 Thiotrichales 72273 36 27 0 2217 family 1 Thiotrichaceae 135617 5 10 0 0 1 Beggiatoa 1021 3 2 1269 genus 0 Beggiatoa leptomitoformis 288004 1 1266 species 2 3 1 40751 Thioploca 0 genus 938 935 species 0 40754 Thioploca ingrica 1 0 15 49 1 Piscirickettsiaceae 135616 family 9084 1 40222 Methylophaga 3 9 0 1490 genus 0 754477 Methylophaga frappieri 1 660 species 0 Methylophaga nitratireducenticrescens 754476 1 821 species 1309 genus 1237 Piscirickettsia 1 6 2 0 0 Piscirickettsia salmonis 1238 1 1303 species genus 1184 0 3 8 933 Thiomicrospira 1 0 147268 Thiomicrospira cyclica 1 595 species 581 species 0 Thiomicrospira aerophila 92245 1 0 1 Hydrogenovibrio 28884 2 5 668 genus 39765 Hydrogenovibrio crunogenus 1 0 663 species genus 4384 0 4 73 Cycloclasticus 34067 1 0 1 1329899 Cycloclasticus zancles species 1427 2621467 2 0 2884 no rank 1483 species 0 Cycloclasticus sp. PY97N 728003 1 385025 Cycloclasticus sp. P1 1 0 1401 species 0 1 34064 Francisellaceae 44 15 20333 family 7 2 Allofrancisella 1 1869285 0 genus 1283 1276 species 0 Allofrancisella guangzhouensis 594679 1 19006 genus 1 Francisella 262 12 281 0 species 3339 1 Francisella tularensis 263 0 species 1200 1 Francisella persica 954 0 2266 no rank 2610885 2 0 990 species 0 Francisella sp. MA067296 475375 1 0 1547445 Francisella sp. FSC1006 1 1276 species species 1063 0 1 Francisella sp. TX077308 573569 Francisella sp. CA97-1460 1542390 1 0 1830 species 2703 species 0 Francisella philomiragia 28110 1 Francisella noatunensis 657445 1 0 1995 species 0 Francisella sp. TX077310 573570 1 1577 species 0 1 Francisella hispaniensis 622488 species 1150 species 1602 1 Francisella halioticida 549298 0 order 9987 0 16 27 Aeromonadales 1 135624 67 26 Aeromonadaceae 1 84642 0 family 9971 1 129577 0 genus 330 no rank 330 0 1 2636315 species 330 1 Oceanimonas sp. GK1 511062 0 43947 1 0 308 genus species 308 0 1 43948 Tolumonas auensis genus 1061 0 10 3 225143 1 Oceanisphaera 1903694 Oceanisphaera sp. AMac2203 1 0 521 species 530 species 0 Oceanisphaera profunda 1416627 1 genus 554 0 3 2 347533 Zobellella 1 0 1 347534 Zobellella denitrificans species 551 7651 genus 0 642 1 Aeromonas 18 242 species 182 0 1 196024 Aeromonas dhakensis 948519 Aeromonas rivipollensis 1 0 187 species species 144 1 648 Aeromonas caviae 0 0 1 644 Aeromonas hydrophila species 1323 species 504 0 1 645 Aeromonas salmonicida species 219 0 1 Aeromonas media 651 3775 no rank 0 257493 8 162 species 1636608 Aeromonas sp. ASNIH3 1 0 0 1 1636606 Aeromonas sp. ASNIH1 species 1916 0 1 Aeromonas sp. CA23 2033032 species 280 0 1758179 Aeromonas sp. ASNIH5 1 649 species 1 Aeromonas sp. CU5 2033033 0 species 264 species 141 0 1 1920107 Aeromonas sp. ASNIH7 Aeromonas sp. ASNIH4 1636609 1 0 200 species 163 species 0 1636607 Aeromonas sp. ASNIH2 1 0 1 654 Aeromonas veronii species 583 211 species Aeromonas aquatica 558964 1 0 0 Aeromonas schubertii 652 1 281 species order 12620 0 92 50 135613 1 Chromatiales 3 4 Woeseiaceae 1 1738654 0 family 763 1 1738655 Woeseia 2 14 0 759 genus 1 1548547 Woeseia oceani 0 species 745 0 18 60 1 1046 Chromatiaceae family 5457 genus 577 2 6 Thiocystis 1 13724 0 0 Thiocystis violascens 73141 1 571 species 788 genus 0 1980513 1 Candidatus Nitrosoglobus 2 2 0 Candidatus Nitrosoglobus terrae 1630141 1 786 species 1 85076 Marichromatium 2 6 0 469 genus 1 Marichromatium purpuratum 37487 0 species 463 no rank 468 0 1 82569 468 species Chromatiaceae bacterium 2141T.STBD.0c.01a 1978339 1 0 0 85072 1 Allochromatium 4 2 250 genus 246 species Allochromatium vinosum 1049 1 0 1307 genus 0 1 1227 Nitrosococcus 4 18 0 Nitrosococcus halophilus 133539 1 427 species 439 species Nitrosococcus watsonii 473531 1 0 1 Nitrosococcus oceani 1229 0 species 423 0 4 2 53392 1 Thiodictyon genus 953 949 species 1166950 Candidatus Thiodictyon syntrophicum 1 0 585 genus 0 1 156885 Thioflavicoccus 2 14 1 80679 Thioflavicoccus mobilis 0 species 571 family 873 0 3 8 449719 1 Granulosicoccaceae 865 genus Granulosicoccus 1 437504 2 12 0 0 Granulosicoccus antarcticus 437505 1 853 species 725 family 0 1676141 2 0 2 10 1 Wenzhouxiangella 1676142 genus 725 715 species 0 1579979 Wenzhouxiangella marina 1 no rank 469 0 2 451214 7 2 1273155 1 Thiohalobacter 0 genus 469 462 species Thiohalobacter thiocyanaticus 585455 1 0 1 255526 Halothiobacillaceae 4 4 0 626 family 0 10 3 109262 1 Halothiobacillus genus 622 species 346 0 1 927 Halothiobacillus neapolitanus no rank 266 0 1 2636392 0 1 1860122 Halothiobacillus sp. LS2 species 266 0 Ectothiorhodospiraceae 1 72276 17 40 3615 family 6 46 Thioalkalivibrio 1 106633 0 genus 1765 276 species Thioalkalivibrio versutus 106634 1 0 0 186931 Thioalkalivibrio nitratireducens 1 340 species 0 108010 Thioalkalivibrio paradoxus 1 365 species 319 no rank 0 2621013 1 0 1 396595 Thioalkalivibrio sp. K90mix species 319 species 419 1 1033854 Thioalkalivibrio sulfidiphilus 0 614 genus 0 Spiribacter 1335745 1 1 3 0 1335757 Spiribacter curvatus 1 316 species species 297 1 1335746 Spiribacter salinus 0 303 genus 0 Ectothiorhodospira 1051 1 2 11 0 1 2684909 no rank 292 292 species 0 Ectothiorhodospira sp. BSL-9 1442136 1 290 genus Alkalilimnicola 1 133193 1 2 0 0 351052 Alkalilimnicola ehrlichii 1 289 species 85108 1 Halorhodospira 2 4 0 248 genus species 244 0 1 1053 Halorhodospira halophila 0 1765964 1 355 genus 160660 Acidihalobacter prosperus 1 0 355 species no rank 39479 0 14 118884 2 3 Thiolapillus 1 1608298 0 genus 404 401 species 0 1076588 Thiolapillus brandeum 1 4976 clade 0 32036 4 0 1 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont species 1334 1541743 1 Candidatus Ruthia 2 7 0 1657 genus 0 Candidatus Ruthia magnifica 386487 1 1650 species species 1985 1 Calyptogena okutanii thioautotrophic gill symbiont 410330 0 genus 529 0 2 22 1 Sedimenticola 349742 species 507 0 1 1543721 Sedimenticola thiotaurini 0 Candidatus Thioglobus 655184 1 3 28 30725 genus 0 1 Candidatus Thioglobus autotrophicus 1705394 species 1724 species 28973 0 1 Candidatus Thioglobus singularis 1427364 0 198346 1 1816 clade 0 1 186490 Candidatus Baumannia cicadellinicola species 1816 1029 genus 0 1 1524249 Pseudohongiella 2 13 0 1 Pseudohongiella spirulinae 1249552 species 1016 0 1 Methylococcales 135618 13 13 3321 order 0 1 Methylococcaceae 403 12 15 3308 family genus 840 2 6 1 Methylomicrobium 39773 0 0 1 Methylomicrobium alcaliphilum 271065 species 834 genus 1695 0 5 77 416 Methylomonas 1 1 421 Methylomonas methanica 0 species 364 376 species 0 Methylomonas koyamae 702114 1 398 no rank 2608980 1 0 0 1727196 Methylomonas sp. DH-1 1 398 species 480 species 0 1538553 Methylomonas denitrificans 1 3 2 Methylovulum 762296 1 0 genus 455 452 species 0 1704499 Methylovulum psychrotolerans 1 0 Methylococcus 1 413 2 13 303 genus 0 414 Methylococcus capsulatus 1 290 species 1 135625 Pasteurellales 32 14 0 14338 order 0 83 31 Pasteurellaceae 1 712 family 14324 3 3 1 416916 Aggregatibacter 0 genus 976 0 714 Aggregatibacter actinomycetemcomitans 1 420 species 553 species 0 732 Aggregatibacter aphrophilus 1 genus 2484 0 10 3 745 Pasteurella 1 0 Pasteurella multocida 747 1 1703 species Pasteurella dagmatis 754 1 0 771 species 0 214906 1 Histophilus 2 8 1020 genus 1 731 Histophilus somni 0 species 1012 genus 4370 54 6 Haemophilus 1 724 0 0 Haemophilus pittmaniae 249188 1 431 species species 2075 1 Haemophilus influenzae 727 0 species 741 0 1 730 [Haemophilus] ducreyi species 504 0 1 Haemophilus parainfluenzae 729 2609962 1 0 565 no rank species 565 0 1 712310 Haemophilus sp. oral taxon 036 genus 1393 0 5 24 1 Actinobacillus 713 Actinobacillus succinogenes 67854 1 0 221 species 0 716 Actinobacillus suis 1 404 species 342 species Actinobacillus equuli 718 1 0 species 402 1 715 Actinobacillus pleuropneumoniae 0 256 genus 1 Basfia 697331 2 2 0 254 species 157673 [Mannheimia] succiniciproducens 1 0 1522 genus 0 Mannheimia 1 75984 4 18 species 448 1 75985 Mannheimia haemolytica 0 593 species 0 85404 Mannheimia varigena 1 0 2645054 1 463 no rank 463 species 1432056 Mannheimia sp. USDA-ARS-USMARC-1261 1 0 genus 711 0 2 13 Bibersteinia 1 476528 species 698 1 47735 Bibersteinia trehalosi 0 2 1 155493 1 Gallibacterium 0 genus 487 486 species 0 750 Gallibacterium anatis 1 0 1 2094023 genus 1022 0 1 738 Glaesserella parasuis species 1022 order 480 0 4 17 Immundisolibacterales 1 1934945 0 1934946 1 Immundisolibacteraceae 3 3 463 family 2 6 Immundisolibacter 1 1934947 0 genus 460 454 species 1810504 Immundisolibacter cernigliae 1 0 1 118969 Legionellales 20 12 0 15927 order 118968 1 Coxiellaceae 5 29 0 1845 family 1225 genus 0 Coxiella 1 776 3 13 0 2676648 1 582 no rank 582 species 325775 Coxiella endosymbiont of Amblyomma americanum 1 0 species 630 0 1 Coxiella burnetii 777 0 134284 1 591 no rank 1 Coxiella-like endosymbiont 1592897 0 species 591 Legionellaceae 1 444 14 40 0 14070 family genus 13221 86 12 Legionella 445 1 0 species 521 1 452 Legionella spiritensis 0 0 Legionella endosymbiont of Polyplax serrata 2005262 1 948 species 0 1 Legionella hackeliae 449 species 936 species 801 0 1 1867846 Legionella clemsonensis 0 1 Legionella pneumophila 446 species 3563 1118 species 66969 Legionella waltersii 1 0 1 45067 Legionella lansingensis 0 species 802 species 1342 1 450 Legionella longbeachae 0 1 Legionella sainthelensi 28087 0 species 1233 species 746 1 Legionella oakridgensis 29423 0 1 Legionella fallonii 96230 0 species 1125 1 465 0 genus 809 species 809 0 1 Tatlockia micdadei 451 0 106 145 Alteromonadales 1 135622 order 70863 0 3 2 1 267892 Ferrimonadaceae family 308 genus 306 2 2 1 44011 Ferrimonas 0 304 species Ferrimonas balearica 44012 1 0 1 Idiomarinaceae 267893 9 6 0 1760 family genus 1751 39 5 1 135575 Idiomarina 0 431 species 0 1096243 Idiomarina piscisalsi 1 species 452 0 1 135577 Idiomarina loihiensis 0 2614829 2 829 no rank 1 Idiomarina sp. OT37-5b 2100422 0 species 392 species 437 0 1 Idiomarina sp. X4 2055892 267894 1 Psychromonadaceae 2 4 0 2670 family 2668 genus 67572 1 Psychromonas 10 3 0 1153 no rank 0 2614957 1 1153 species 0 314282 Psychromonas sp. CNPT3 1 0 Psychromonas ingrahamii 357794 1 1505 species 17407 family Alteromonadaceae 1 72275 69 30 0 Lacimicrobium 1 1751872 2 8 0 1844 genus 0 Lacimicrobium alkaliphilum 1526571 1 1836 species genus 3787 0 10 75 1 Marinobacter 2742 2743 Marinobacter hydrocarbonoclasticus 1 0 524 species species 310 1 Marinobacter salinus 1874317 0 Marinobacter similis 1420916 1 0 336 species 1 1420917 Marinobacter salarius 0 species 418 Marinobacter adhaerens 1033846 1 0 329 species 586 species 330734 Marinobacter psychrophilus 1 0 1209 no rank 0 83889 3 Marinobacter sp. BSs20148 490759 1 0 484 species 0 Marinobacter sp. LQ44 1749259 1 384 species 341 species 1671721 Marinobacter sp. CP1 1 0 0 8 3 89404 1 Glaciecola genus 1707 species 919 0 1 Glaciecola nitratireducens 300231 0 1 2618684 no rank 780 species 780 1 Glaciecola sp. 4H-3-7+YE-5 983545 0 genus 627 0 2 1 1 261825 Agarivorans 0 1 680279 Agarivorans gilvus species 626 0 Alteromonas 226 1 130 10 7726 genus 0 2614992 3 1725 no rank 704 species 0 1777491 Alteromonas sp. Mac1 1 539 species 0 1917158 Alteromonas sp. RW2A1 1 species 482 1 Alteromonas sp. MB-3u-76 2058133 0 species 1495 0 1 28108 Alteromonas macleodii species 635 0 1 Alteromonas australica 589873 879 species 287094 Alteromonas addita 1 0 1073 species 0 314275 Alteromonas mediterranea 1 920 species 233316 Alteromonas stellipolaris 1 0 1 715451 Alteromonas naphthalenivorans 0 species 869 1621534 1 Paraglaciecola 16 2 0 1647 genus species 1631 0 1 326544 Paraglaciecola psychrophila 3 4 1 Moritellaceae 267891 0 family 1145 genus 1141 0 2 2 58050 Moritella 1 species 1139 0 1 80854 Moritella viscosa 0 267888 1 Pseudoalteromonadaceae 33 25 22489 family 22456 genus 0 1 53246 Pseudoalteromonas 24 493 1114 species Pseudoalteromonas spongiae 298657 1 0 species 783 1 Pseudoalteromonas issachenkonii 152297 0 0 1 394751 Pseudoalteromonas arctica species 856 194690 5 0 6849 no rank 0 Pseudoalteromonas sp. NC201 1514074 1 3114 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 1720343 1 0 1052 species 1 1761891 Pseudoalteromonas sp. 13-15 0 species 849 971 species 0 Pseudoalteromonas sp. Bsw20308 283699 1 0 1 Pseudoalteromonas sp. SM9913 234831 species 863 1 28109 Pseudoalteromonas nigrifaciens 0 species 840 821 species 0 247523 Pseudoalteromonas aliena 1 1 Pseudoalteromonas agarivorans 176102 0 species 704 species 745 1 Pseudoalteromonas marina 267375 0 0 1 1348114 Pseudoalteromonas piratica species 939 species 485 1 Pseudoalteromonas rubra 43658 0 Pseudoalteromonas tetraodonis 43659 1 0 843 species species 1050 1 314281 Pseudoalteromonas tunicata 0 786 species 0 161398 Pseudoalteromonas phenolica 1 Pseudoalteromonas piscicida 43662 1 0 636 species 0 Pseudoalteromonas translucida 166935 1 771 species 0 1 288 Pseudoalteromonas atlantica species 1446 species 771 1 28107 Pseudoalteromonas espejiana 0 1 Pseudoalteromonas luteoviolacea 43657 0 species 709 1 Pseudoalteromonas haloplanktis 228 0 species 815 0 24 25 1 Shewanellaceae 267890 family 16521 Shewanella 1 22 24 240 0 16497 genus 0 1 Shewanella psychrophila 225848 species 664 species 835 0 1 Shewanella piezotolerans 404011 species 336 0 1 60478 Shewanella amazonensis species 311 0 1 359303 Shewanella loihica 3356 species 60217 Shewanella violacea 1 0 6 196818 0 no rank 2548 383 species 0 Shewanella sp. ANA-3 94122 1 1 Shewanella sp. W3-18-1 351745 0 species 565 species 429 0 1 Shewanella sp. WE21 2029986 species 344 1 Shewanella sp. MR-7 60481 0 329 species 60480 Shewanella sp. MR-4 1 0 Shewanella sp. Pdp11 2059264 1 0 498 species 0 1 Shewanella baltica 62322 species 1445 93973 Shewanella japonica 1 0 845 species 0 1 260364 Shewanella marisflavi species 385 710 species Shewanella halifaxensis 271098 1 0 species 734 1 24 Shewanella putrefaciens 0 Shewanella bicestrii 2018305 1 0 438 species 1 60961 Shewanella woodyi 0 species 764 70863 Shewanella oneidensis 1 0 363 species 519 species Shewanella denitrificans 192073 1 0 611 species Shewanella sediminis 271097 1 0 1 70864 Shewanella pealeana 0 species 498 species 895 1 Shewanella frigidimarina 56812 0 family 8418 9 22 1 267889 Colwelliaceae 0 3 2 1 1518149 Thalassotalea 0 genus 1135 0 Thalassotalea crassostreae 1763536 1 1132 species 0 63 6 1 28228 Colwellia genus 7261 0 1 1967665 Colwellia beringensis species 1279 3 196834 0 no rank 4334 1816219 Colwellia sp. PAMC 21821 1 0 1252 species 0 Colwellia sp. PAMC 20917 1816218 1 1866 species Colwellia sp. MT41 58049 1 0 1216 species 1585 species Colwellia psychrerythraea 28229 1 0 135615 2 0 374 order family 374 1 2 1 868 Cardiobacteriaceae 0 373 genus 869 1 0 373 species Dichelobacter nodosus 870 1 0 order 121233 247 295 Enterobacterales 1 91347 0 Morganellaceae 1 1903414 49 22 0 9241 family 1934 genus 0 586 Providencia 1 4 20 126385 Providencia alcalifaciens 1 0 449 species 725 species 0 587 Providencia rettgeri 1 1 Providencia stuartii 588 0 species 740 1136 genus 0 Arsenophonus 637 1 1 2 1135 species 0 Arsenophonus symbiont of Lipoptena fortisetosa 634113 1 genus 2225 14 3 1 Proteus 583 0 0 584 Proteus mirabilis 1 1312 species 0 Proteus vulgaris 585 1 899 species genus 393 2 4 Morganella 1 581 0 1 Morganella morganii 582 0 species 389 1452 genus 29487 Photorhabdus 1 21 4 0 559 species 0 291112 Photorhabdus asymbiotica 1 496 species 29488 Photorhabdus luminescens 1 0 1 574560 Photorhabdus temperata 0 species 376 genus 2052 0 24 6 626 Xenorhabdus 1 0 40577 Xenorhabdus poinarii 1 388 species 0 1 40576 Xenorhabdus bovienii species 628 0 1 Xenorhabdus hominickii 351679 species 409 0 628 Xenorhabdus nematophila 1 345 species 258 species 0 Xenorhabdus doucetiae 351671 1 Enterobacteriaceae 543 1 119 312 0 42361 family 4 20 Leclercia 83654 1 0 genus 576 species 203 1 83655 Leclercia adecarboxylata 0 2 2627398 0 no rank 353 species 161 0 1 1920116 Leclercia sp. LSNIH3 192 species 0 1920114 Leclercia sp. LSNIH1 1 0 Raoultella 1 160674 3 11 761 genus species 547 1 54291 Raoultella ornithinolytica 0 203 species 0 Raoultella planticola 575 1 no rank 1387 5 36866 0 1 Enterobacteriaceae bacterium ENNIH1 2066051 0 species 206 species 644 1 891974 Plautia stali symbiont 0 species 203 1 1920109 Enterobacteriaceae bacterium ENNIH2 0 0 1920128 Enterobacteriaceae bacterium ENNIH3 1 162 species 0 Enterobacteriaceae bacterium strain FGI 57 693444 1 172 species 3 13 Salmonella 590 1 0 genus 2892 0 1 Salmonella bongori 54736 species 220 Salmonella enterica 28901 1 0 2659 species genus 922 18 5 1 Kosakonia 1330547 0 1 Kosakonia oryzae 497725 0 species 177 290 species 0 283686 Kosakonia radicincitans 1 species 232 1 1158459 Kosakonia sacchari 0 Kosakonia cowanii 208223 1 0 205 species 334 genus 0 Shigella 620 1 4 22 no rank 73 0 1 2629414 0 Shigella sp. PAMC 28760 1813821 1 73 species 0 1 623 Shigella flexneri species 104 0 1 622 Shigella dysenteriae species 135 genus 646 0 2 3 1 1330546 Pluralibacter 392 species 0 Pluralibacter gergoviae 61647 1 252 species 0 1334193 [Enterobacter] lignolyticus 1 3657 genus 1 561 Escherichia 15 5 0 187 species 0 Escherichia fergusonii 564 1 0 Escherichia albertii 208962 1 443 species species 2836 1 Escherichia coli 562 0 species 176 0 1 1499973 Escherichia marmotae 409304 1 0 772 genus species 772 0 1 168169 Candidatus Ishikawaella capsulata Enterobacter 1 547 22 231 0 8218 genus species group 6667 0 12 354276 2282 species 0 158836 Enterobacter hormaechei 1 3 1901 subspecies 257 1 1812934 Enterobacter cloacae complex 'Hoffmann cluster III' 0 0 1296536 Enterobacter xiangfangensis 1 124 subspecies 0 1 1812935 Enterobacter cloacae complex 'Hoffmann cluster IV' species 91 0 1 299767 Enterobacter ludwigii species 138 379 species 0 Enterobacter asburiae 61645 1 no rank 294 3 2757714 0 species 79 1 Enterobacter cloacae complex sp. ECNIH7 1915310 0 138 species 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 2077137 1 1 Enterobacter cloacae complex bacterium 2027919 0 species 77 0 69218 Enterobacter cancerogenus 1 162 species 1 Enterobacter cloacae 550 0 species 3183 138 species Enterobacter kobei 208224 1 0 no rank 1320 0 9 2608935 species 116 1 Enterobacter sp. ODB01 1827481 0 species 103 0 1 1977566 Enterobacter sp. Crenshaw species 87 0 1 Enterobacter sp. E20 1560339 species 148 0 1 1914861 Enterobacter sp. SA187 0 Enterobacter sp. R4-368 1166130 1 286 species 0 1 Enterobacter sp. 638 399742 species 147 species 228 1 1692238 Enterobacter sp. FY-07 0 88 species Enterobacter sp. HK169 1868135 1 0 species 117 1 2051905 Enterobacter sp. CRENT-193 0 0 1 Kluyvera 579 1 2 231 genus 0 61648 Kluyvera intermedia 1 230 species 401618 1 0 619 genus 0 1 Candidatus Riesia pediculicola 401619 species 619 genus 3756 87 14 1 544 Citrobacter 0 no rank 373 2 2644389 0 species 183 1 Citrobacter sp. CFNIH10 1920110 0 190 species 1702170 Citrobacter sp. FDAARGOS_156 1 0 164 species 0 Citrobacter rodentium 67825 1 35703 Citrobacter amalonaticus 1 0 370 species 0 1 Citrobacter koseri 545 species 223 2322 species group 1344959 7 0 1 Citrobacter freundii complex sp. CFNIH9 2077149 0 species 176 species 174 0 1 2077147 Citrobacter freundii complex sp. CFNIH3 0 2066049 Citrobacter freundii complex sp. CFNIH2 1 133 species species 888 0 1 Citrobacter freundii 546 0 1 57706 Citrobacter braakii species 386 0 67827 Citrobacter werkmanii 1 396 species species 169 1 Citrobacter freundii complex sp. CFNIH4 2077148 0 1 67824 Citrobacter farmeri 0 species 217 1377 genus 0 1 413496 Cronobacter 50 8 species 123 1 413501 Cronobacter muytjensii 0 0 413502 Cronobacter turicensis 1 174 species species 310 1 Cronobacter sakazakii 28141 0 0 1 1163710 Cronobacter condimenti species 186 species 152 1 535744 Cronobacter universalis 0 0 413503 Cronobacter malonaticus 1 163 species 219 species 413497 Cronobacter dublinensis 1 0 1 1335483 0 genus 157 species 157 1 563 Shimwellia blattae 0 191675 20 0 8275 no rank clade 8275 0 20 84563 clade 443 0 1 199891 0 1 1835721 secondary endosymbiont of Trabutina mannipara species 443 0 Candidatus Gullanella 1 1906661 2 1 407 genus species 406 0 1 Candidatus Gullanella endobia 1070130 2 2 1906659 1 Candidatus Hoaglandella 0 genus 240 1 Candidatus Hoaglandella endobia 1778263 0 species 238 clade 4202 0 7 84564 4202 genus 1 Candidatus Blochmannia 203804 7 57 0 Candidatus Blochmannia pennsylvanicus 101534 1 0 563 species 773 species Candidatus Blochmannia floridanus 203907 1 0 723 species 0 251535 Candidatus Blochmannia vafer 1 711328 2 0 1524 no rank 0 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 species 841 683 species 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 1 562 species 0 Candidatus Blochmannia chromaiodes 251542 1 0 146507 4 1211 clade secondary endosymbiont of Ctenarytaina eucalypti 1199245 1 0 209 species 0 134287 secondary endosymbiont of Heteropsylla cubana 1 461 species genus 541 0 4 2 Candidatus Hamiltonella 1 568987 537 species 138072 Candidatus Hamiltonella defensa 1 0 1 1906657 0 genus 121 0 1778262 Candidatus Doolittlea endobia 1 121 species 1906660 1 0 487 genus 1 1778264 Candidatus Mikella endobia 0 species 487 1164 genus 1682492 1 Candidatus Tachikawaea 2 3 0 1 1410383 Candidatus Tachikawaea gelatinosa 0 species 1161 genus 773 2 2 1 158483 Cedecea 0 species 771 0 1 158822 Cedecea neteri 0 1 Klebsiella 570 10 170 5608 genus 474 no rank 0 2608929 2 219 species 0 Klebsiella sp. LTGPAF-6F 1905288 1 0 1 Klebsiella sp. M5al 1934254 species 255 species 935 0 1 Klebsiella oxytoca 571 0 Klebsiella variicola 244366 1 487 species 1788 species 573 Klebsiella pneumoniae 1 0 Klebsiella aerogenes 548 1 0 622 species Klebsiella michiganensis 1134687 1 0 601 species 311 species 0 Klebsiella quasipneumoniae 1463165 1 0 1 Klebsiella quasivariicola 2026240 species 220 1048757 1 0 148 genus 148 species 0 1048758 Candidatus Moranella endobia 1 940 genus 0 Lelliottia 1 1330545 10 4 0 Lelliottia nimipressuralis 69220 1 161 species 1 Lelliottia jeotgali 1907578 0 species 200 0 1 Lelliottia amnigena 61646 species 569 0 4 2 1903416 1 Budviciaceae family 426 0 82984 1 422 genus 422 species 0 Pragia fontium 82985 1 16104 family 0 1 Yersiniaceae 1903411 48 39 2 9 1745211 1 Chania 0 genus 310 species 301 1 Chania multitudinisentens 1639108 0 8 genus 1565532 Rouxiella 1 0 815 genus 1 34037 Rahnella 9 4 0 0 2635087 2 542 no rank 244 species Rahnella sp. Y9602 741091 1 0 298 species 0 Rouxiella sp. ERMR1:05 1805933 1 264 species Rahnella aquatilis 34038 1 0 3 2 Gibbsiella 929812 1 0 genus 282 1 Gibbsiella quercinecans 929813 0 species 279 7354 genus 629 1 Yersinia 156 13 0 species 1263 1 Yersinia enterocolitica 630 0 0 Yersinia aleksiciae 263819 1 252 species 354 species Yersinia kristensenii 28152 1 0 Yersinia rohdei 29485 1 0 351 species 1086 species 0 Yersinia frederiksenii 29484 1 no rank 468 1 2653513 0 species 468 0 1 1839800 Yersinia sp. FDAARGOS_228 0 Yersinia ruckeri 29486 1 554 species 0 631 Yersinia intermedia 1 529 species species group 2000 3 1649845 0 1 Yersinia similis 367190 0 species 409 0 1 Yersinia pseudotuberculosis 633 species 925 666 species Yersinia pestis 632 1 0 species 341 1 29483 Yersinia aldovae 0 7287 genus 0 1 613 Serratia 16 196 species 228 0 1 Serratia ficaria 61651 0 615 Serratia marcescens 1 1526 species species 215 1 28151 Serratia proteamaculans 0 82996 Serratia plymuthica 1 0 650 species 308 species 61652 Serratia rubidaea 1 0 0 2647522 8 1986 no rank species 251 0 1 Serratia sp. FS14 1327989 Serratia sp. SSNIH1 1758196 1 0 215 species 104623 Serratia sp. ATCC 39006 1 0 348 species 1 488142 Serratia sp. SCBI 0 species 239 species 239 1 2033438 Serratia sp. MYb239 0 Serratia sp. FGI94 671990 1 0 270 species species 212 0 1 768493 Serratia sp. AS13 species 212 1 Serratia sp. AS12 768490 0 species 251 1 614 Serratia liquefaciens 0 1 Serratia fonticola 47917 0 species 1927 family 20237 0 54 28 1 Erwiniaceae 1903409 53335 1 Pantoea 148 11 0 3909 genus species 718 0 1 1235990 Candidatus Pantoea carbekii 1654067 1 0 459 species group 0 Pantoea agglomerans 549 1 459 species Pantoea rwandensis 1076550 1 0 225 species 3 2630326 0 no rank 955 0 1 Pantoea sp. PSNIH1 1484158 species 274 species 410 0 1 1484157 Pantoea sp. PSNIH2 0 Pantoea sp. At-9b 592316 1 271 species 439 species 0 553 Pantoea ananatis 1 277 species 0 1891675 Pantoea alhagi 1 1 66269 Pantoea stewartii 0 species 201 species 487 1 Pantoea vagans 470934 0 genus 11266 2 41 Buchnera 1 32199 0 11225 species 0 9 Buchnera aphidicola 1 2 20 Wigglesworthia 51228 1 0 genus 1974 0 1 Wigglesworthia glossinidia 51229 species 1954 551 1 Erwinia 41 8 0 1944 genus species 432 0 1 Candidatus Erwinia sp. ErCipseudotaxifoliae 1922217 Erwinia billingiae 182337 1 0 307 species 0 1 79967 Erwinia pyrifoliae species 218 0 1 1619313 Erwinia gerundensis species 286 1 552 Erwinia amylovora 0 species 188 0 Erwinia tasmaniensis 338565 1 220 species 252 no rank 2622719 1 0 species 252 1 Erwinia sp. Ejp617 215689 0 0 2 2100764 genus 791 species 336 0 1 665914 Pantoea gaviniae 455 species Pantoea calida 665913 1 0 299 genus 1 Tatumella 82986 2 2 0 297 species 53336 Tatumella citrea 1 0 0 28 14 Hafniaceae 1 1903412 family 26476 0 2 1 1 82982 Obesumbacterium genus 214 0 1 82983 Obesumbacterium proteus species 213 0 3 24 1 Hafnia 568 genus 1009 no rank 281 0 1 2621980 Hafnia sp. CBA7124 1848580 1 0 281 species 1 569 Hafnia alvei 0 species 704 25225 genus 635 1 Edwardsiella 99 8 0 no rank 538 2 2676541 0 0 1 Edwardsiella sp. LADL05-105 1650654 species 253 285 species Edwardsiella sp. EA181011 1578828 1 0 23647 species 0 636 Edwardsiella tarda 1 species 217 0 1 93378 Edwardsiella hoshinae Edwardsiella ictaluri 67780 1 0 257 species 193 species 0 1263550 Edwardsiella piscicida 1 274 species 0 Edwardsiella anguillarum 1821960 1 1 Pectobacteriaceae 1903410 38 20 0 5659 family 0 41 6 Pectobacterium 1 122277 genus 2370 0 1 29471 Pectobacterium atrosepticum species 286 0 1 Pectobacterium polaris 2042057 species 321 1 Pectobacterium carotovorum 554 0 species 846 1905730 Pectobacterium parmentieri 1 0 434 species Pectobacterium wasabiae 55208 1 0 442 species genus 1581 6 58 Dickeya 1 204037 0 0 1778540 Dickeya fangzhongdai 1 227 species 211 species 204038 Dickeya dadantii 1 0 species 464 1 204042 Dickeya zeae 0 0 Dickeya solani 1089444 1 381 species 0 1 204039 Dickeya dianthicola species 240 71655 1 Brenneria 2 14 0 273 genus 259 species Brenneria goodwinii 1109412 1 0 genus 1397 22 5 Sodalis 1 84565 0 species 212 0 1 63612 Sodalis glossinidius species 612 1 Candidatus Sodalis pierantonius 1486991 0 1 1239307 Sodalis praecaptivus 0 species 304 Sodalis endosymbiont of Henestaris halophilus 1929246 1 0 247 species no rank 434 2 451511 0 0 Plesiomonas 1 702 3 2 434 genus 0 Plesiomonas shigelloides 703 1 431 species order 13090 0 30 37 1 Cellvibrionales 1706369 0 Spongiibacteraceae 1 1706375 71 7 3228 family genus 1256 1 2 1 Oceanicoccus 1084558 0 species 1255 1 Oceanicoccus sagamiensis 716816 0 genus 911 6 2 Zhongshania 1 1434050 0 species 905 0 1 Zhongshania aliphaticivorans 1470434 genus 990 2 6 1 Spongiibacter 630749 0 0 1 2631504 no rank 984 984 species 1620392 Spongiibacter sp. IMCC21906 1 0 0 1 1706372 Halieaceae 10 4 1763 family Halioglobus 1 1217416 58 3 0 1753 genus 1 930805 Halioglobus japonicus 0 species 840 855 species 930806 Halioglobus pacificus 1 0 6075 family 1 Cellvibrionaceae 1706371 50 13 0 1 10 Cellvibrio 4 23 0 2136 genus Cellvibrio japonicus 155077 1 0 605 species no rank 1508 0 2 2624793 species 807 0 1 1987723 Cellvibrio sp. PSBB006 species 701 1 1945512 Cellvibrio sp. PSBB023 0 0 Agarilytica 1 2036021 2 1 1491 genus 0 1737490 Agarilytica rhodophyticola 1 1490 species 0 10 2 2425 Teredinibacter 1 genus 760 species 750 1 Teredinibacter turnerae 2426 0 genus 609 2 4 447467 Simiduia 1 0 605 species Simiduia agarivorans 447471 1 0 0 2 6 1 316625 Saccharophagus genus 1029 0 Saccharophagus degradans 86304 1 1023 species Microbulbiferaceae 1 1706373 5 7 0 1987 family 0 1 48073 Microbulbifer 75 4 1980 genus 618 species 0 Microbulbifer thermotolerans 252514 1 species 632 0 1 Microbulbifer aggregans 1769779 Microbulbifer agarilyticus 260552 1 0 655 species 0 193 128 1 72274 Pseudomonadales order 81393 family 48985 85 273 Pseudomonadaceae 1 135621 0 46861 genus 1 Pseudomonas 286 80 1178 0 2 136846 0 species group 6423 6067 species subgroup 0 578833 1 Pseudomonas stutzeri 316 1 0 6067 species 356 species 0 74829 Pseudomonas balearica 1 Pseudomonas parafulva 157782 1 0 430 species 223 species 157783 Pseudomonas cremoricolorata 1 0 209 species 0 Pseudomonas lurida 244566 1 no rank 8743 0 30 196821 0 1 2083052 Pseudomonas sp. SWI36 species 277 species 258 0 1 1338689 Pseudomonas sp. JY-Q 0 1 1207075 Pseudomonas sp. UW4 species 235 0 1 1294143 Pseudomonas sp. ATCC 13867 species 371 206 species Pseudomonas sp. VLB120 69328 1 0 2083055 Pseudomonas sp. LH1G9 1 0 217 species species 218 1 Pseudomonas sp. FGI182 1259844 0 species 262 0 1 Pseudomonas sp. StFLB209 1028989 153 species 0 1827300 Pseudomonas sp. MYb193 1 species 443 1 1981174 Pseudomonas sp. M30-35 0 species 299 1 Pseudomonas sp. Os17 1500686 0 Pseudomonas sp. XWY-1 2069256 1 0 213 species 227 species Pseudomonas sp. CCOS 191 1649877 1 0 0 1 2018067 Pseudomonas sp. FDAARGOS_380 species 215 265 species 0 2067572 Pseudomonas sp. NC02 1 0 Pseudomonas sp. TKP 1415630 1 362 species Pseudomonas sp. TCU-HL1 1856685 1 0 284 species Pseudomonas sp. HLS-6 2049589 1 0 215 species Pseudomonas sp. S-6-2 1931241 1 0 442 species 213 species 0 2083054 Pseudomonas sp. LG1D9 1 0 1 2083051 Pseudomonas sp. SWI6 species 250 1 1500687 Pseudomonas sp. St29 0 species 267 0 1 1611770 Pseudomonas sp. MRSN12121 species 339 1 Pseudomonas sp. URMO17WK12:I11 1283291 0 species 579 species 247 1 Pseudomonas sp. GR 6-02 1659194 0 1930532 Pseudomonas sp. CC6-YY-74 1 0 624 species species 301 0 1 1898684 Pseudomonas sp. LPH1 species 229 1 1534110 Pseudomonas sp. DR 5-09 0 1 1636610 Pseudomonas sp. PONIH3 0 species 290 species 242 0 1 2083053 Pseudomonas sp. SWI44 1 Pseudomonas versuta 1788301 0 species 314 488 species 0 930166 Pseudomonas brassicacearum 1 300 species 0 101564 Pseudomonas alcaliphila 1 624 species 0 198620 Pseudomonas koreensis 1 689 species 0 104087 Pseudomonas frederiksbergensis 1 species 351 1 Pseudomonas knackmussii 65741 0 species group 5702 9 136843 0 species 219 0 1 Pseudomonas corrugata 47879 450 species Pseudomonas azotoformans 47878 1 0 169 species 0 Pseudomonas poae 200451 1 Pseudomonas orientalis 76758 1 0 166 species species 338 0 1 200450 Pseudomonas trivialis 380021 Pseudomonas protegens 1 0 396 species 3475 species Pseudomonas fluorescens 294 1 0 Pseudomonas mandelii 75612 1 0 273 species 0 76761 Pseudomonas veronii 1 216 species 0 219572 Pseudomonas antarctica 1 263 species species 209 1 237609 Pseudomonas alkylphenolica 0 2 136842 0 species group 2520 species 982 1 Pseudomonas fragi 296 0 0 587753 Pseudomonas chlororaphis 1 1538 species 1 237610 Pseudomonas psychrotolerans 0 species 313 species 218 0 1 Pseudomonas rhizosphaerae 216142 species 267 1 Pseudomonas cerasi 1583341 0 species 271 1 Pseudomonas entomophila 312306 0 0 8 136849 species group 4469 874 species subgroup 251698 2 0 418 species 0 29438 Pseudomonas savastanoi 1 456 species 47877 Pseudomonas amygdali 1 0 1 Pseudomonas cichorii 36746 0 species 196 321 no rank 0 2775504 1 0 1 1206777 Pseudomonas sp. Lz4W species 321 1 Pseudomonas viridiflava 33069 0 species 209 1 Pseudomonas syringae group genomosp. 3 251701 0 species 585 254 species Pseudomonas avellanae 46257 1 0 2030 species subgroup 251695 1 0 1 Pseudomonas syringae 317 0 species 2030 1853130 Pseudomonas silesiensis 1 0 876 species 0 136841 6 5813 species group 0 1 Pseudomonas resinovorans 53412 species 357 1 Pseudomonas mendocina 300 0 species 1191 347 species 43263 Pseudomonas alcaligenes 1 0 1232139 1 0 343 species subgroup species 343 1 Pseudomonas furukawaii 1149133 0 species 2971 1 287 Pseudomonas aeruginosa 0 species 604 0 1 Pseudomonas citronellolis 53408 species group 5968 6 136845 0 species 859 1 78327 Pseudomonas mosselii 0 0 303 Pseudomonas putida 1 3085 species 1 Pseudomonas monteilii 76759 0 species 615 0 47885 Pseudomonas oryzihabitans 1 680 species 240 species 0 70775 Pseudomonas plecoglossicida 1 47880 Pseudomonas fulva 1 0 489 species 862 genus 1849530 1 0 1 1697053 Oblitimonas alkaliphila 0 species 862 0 351 3 989 subfamily genus 989 15 3 1 352 Azotobacter 0 species 400 0 1 354 Azotobacter vinelandii 574 species 353 Azotobacter chroococcum 1 0 family 32215 42 81 Moraxellaceae 468 1 0 23326 genus 0 Acinetobacter 469 1 25 360 852 species 0 Acinetobacter bereziniae 106648 1 0 1 Acinetobacter radioresistens 40216 species 554 1106 species 0 Acinetobacter junii 40215 1 0 1 Acinetobacter larvae 1789224 species 715 0 108981 Acinetobacter schindleri 1 474 species 1 756892 Acinetobacter indicus 0 species 349 species 944 0 1 29430 Acinetobacter haemolyticus 909768 5 0 9614 species group species 1099 0 1 106654 Acinetobacter nosocomialis 0 Acinetobacter lactucae 1785128 1 763 species species 3147 1 Acinetobacter baumannii 470 0 1908 species 471 Acinetobacter calcoaceticus 1 0 2697 species 0 48296 Acinetobacter pittii 1 0 202950 1 724 species strain 724 1 62977 Acinetobacter sp. ADP1 0 0 1 Acinetobacter soli 487316 species 704 Acinetobacter johnsonii 40214 1 0 591 species 804 species 0 1148157 Acinetobacter oleivorans 1 0 1324350 Acinetobacter equi 1 1179 species 4356 no rank 0 196816 7 801 species 1646498 Acinetobacter sp. TTH0-4 1 0 1608473 Acinetobacter sp. NCu2D-2 1 0 656 species species 625 1 Acinetobacter sp. ACNIH2 1758189 0 Acinetobacter sp. ACNIH1 1636603 1 0 480 species 1 Acinetobacter sp. TGL-Y2 1407071 0 species 685 0 1808001 Acinetobacter sp. LoGeW2-3 1 501 species 1 Acinetobacter sp. SWBY1 2079596 0 species 608 0 497 Psychrobacter 1 130 11 6071 genus 6 196806 0 no rank 3598 species 617 0 1 Psychrobacter sp. P2G3 1699622 673 species 0 571800 Psychrobacter sp. G 1 349106 Psychrobacter sp. PRwf-1 1 0 693 species 1 Psychrobacter sp. AntiMn-1 1720344 0 species 510 546 species Psychrobacter sp. P11G5 1699624 1 0 species 559 1 1028416 Psychrobacter sp. DAB_AL43B 0 0 1 334543 Psychrobacter arcticus species 572 535 species Psychrobacter alimentarius 261164 1 0 597 species 0 Psychrobacter urativorans 45610 1 1 Psychrobacter cryohalolentis 330922 0 species 639 475 Moraxella 1 27 5 0 2737 genus species 689 0 1 480 Moraxella catarrhalis 1 34062 Moraxella osloensis 0 species 1140 species 550 0 1 Moraxella bovoculi 386891 0 Moraxella ovis 29433 1 331 species 25885 order 0 1 135619 Oceanospirillales 77 69 family 1746 0 5 4 255527 1 Saccharospirillaceae genus 708 1 1445504 0 species 708 1 Gynuella sunshinyii 1445505 0 1033 genus 0 Reinekea 1 230494 2 9 1336806 Reinekea forsetii 1 0 1024 species 0 Oleiphilaceae 1 191033 3 12 794 family 0 141450 Oleiphilus 1 2 12 782 genus 0 1 141451 Oleiphilus messinensis species 770 2903 family 1 Alcanivoracaceae 224372 22 9 0 59753 Alcanivorax 1 6 88 0 2261 genus 469 species Alcanivorax borkumensis 59754 1 0 species 458 0 1 Alcanivorax pacificus 1306787 1 1094342 Alcanivorax xenomutans 0 species 406 396 species 0 Alcanivorax dieselolei 285091 1 444 no rank 0 2638842 1 444 species 0 Alcanivorax sp. NBRC 101098 1113728 1 genus 620 0 32 2 2025617 1 Ketobacter 0 1917421 Ketobacter alkanivorans 1 588 species family 548 1 3 224379 1 Hahellaceae 0 547 genus 0 1 158481 Hahella 2 8 Hahella chejuensis 158327 1 0 539 species family 6411 59 13 Oceanospirillaceae 1 135620 0 genus 2895 0 33 4 Marinomonas 28253 1 119864 Marinomonas mediterranea 1 0 845 species 0 196814 1 1139 no rank 1139 species Marinomonas sp. MWYL1 400668 1 0 1 Marinomonas posidonica 936476 0 species 878 genus 784 2 2 1 1537406 Bacterioplanes 0 782 species 0 1249553 Bacterioplanes sanyensis 1 1086 genus 1 Thalassolituus 187492 3 2 0 species 1083 0 1 187493 Thalassolituus oleivorans 1 48075 Marinobacterium 19 2 0 589 genus species 570 1 1821621 Marinobacterium aestuarii 0 5 2 Oleispira 188907 1 0 genus 998 1 188908 Oleispira antarctica 0 species 993 family 3055 6 24 1920240 1 Kangiellaceae 0 0 96 5 1 261963 Kangiella genus 3031 577 species 1144748 Kangiella sediminilitoris 1 0 1 261964 Kangiella koreensis 0 species 885 0 1561924 Kangiella profundi 1 787 species 0 914150 Kangiella geojedonensis 1 686 species family 10351 0 66 30 28256 1 Halomonadaceae 438 genus Halotalea 376488 1 3 2 0 0 1 Halotalea alkalilenta 376489 species 435 0 3 32 1 504090 Kushneria genus 701 0 1 698828 Kushneria konosiri species 333 336 species 0 Kushneria marisflavi 157779 1 3 114403 0 no rank 1794 703 genus 0 235572 1 1 91844 Candidatus Portiera aleyrodidarum 0 species 703 1495768 1 0 749 genus 749 species Candidatus Evansia muelleri 1495769 1 0 genus 342 0 1 114185 species 342 0 1 114186 Candidatus Carsonella ruddii 3 2 1 Salinicola 404432 0 genus 438 species 435 1 1771309 Salinicola tamaricis 0 genus 6044 15 116 1 Halomonas 2745 0 1 475662 Halomonas beimenensis 0 species 410 species 282 1 Halomonas chromatireducens 507626 0 species 406 1 1178482 Halomonas huangheensis 0 437 species 0 213554 Halomonas campaniensis 1 8 2609666 0 no rank 3555 1962264 Halomonas sp. 'Soap Lake #7' 1 0 450 species 0 1 Halomonas sp. 1513 1883416 species 355 0 1 Halomonas sp. 'Soap Lake #6' 1949203 species 453 species 477 1 Halomonas sp. SF2003 2136172 0 392 species 0 Halomonas sp. GFAJ-1 1118153 1 453 species Halomonas sp. GT 1971364 1 0 0 1 1504981 Halomonas sp. KO116 species 486 0 Halomonas sp. R57-5 1610576 1 489 species 485 species 115561 Halomonas hydrothermalis 1 0 species 353 1 Halomonas aestuarii 1897729 0 2 2 Chromohalobacter 1 42054 0 genus 383 381 species 158080 Chromohalobacter salexigens 1 0 genus 487 2 11 1 204286 Cobetia 0 1 28258 Cobetia marina 0 species 476 order 22726 0 143 54 1 Xanthomonadales 135614 2602 family 1775411 1 Rhodanobacteraceae 50 14 0 genus 368 0 2 6 323413 1 Dokdonella species 362 1 Dokdonella koreensis 323415 0 0 Dyella 231454 1 4 19 926 genus 0 1 Dyella japonica 231455 species 309 0 Dyella jiangningensis 1379159 1 296 species species 302 1 445710 Dyella thiooxydans 0 2 2 242605 1 Luteibacter 0 genus 356 354 species 242606 Luteibacter rhizovicinus 1 0 0 1 2 1 Frateuria 70411 genus 312 0 81475 Frateuria aurantia 1 311 species 0 2 4 Rhodanobacter 75309 1 genus 370 0 Rhodanobacter denitrificans 666685 1 366 species 0 1 2233801 genus 220 2021234 Xanthomonadales bacterium D13 1 0 220 species 0 184 39 32033 1 Xanthomonadaceae family 19981 11 3 83618 Pseudoxanthomonas 1 0 genus 902 0 Pseudoxanthomonas spadix 415229 1 261 species Pseudoxanthomonas suwonensis 314722 1 0 630 species genus 259 0 4 2 83614 1 Luteimonas species 255 1 2006110 Luteimonas sp. 100111 0 0 5 33 68 Lysobacter 1 genus 2923 species 558 0 1 Lysobacter enzymogenes 69 922 species 0 84531 Lysobacter antibioticus 1 0 1 435897 Lysobacter capsici species 841 569 species Lysobacter gummosus 262324 1 0 0 1 Stenotrophomonas 40323 68 9 4230 genus 1163 no rank 196198 4 0 281 species 1793721 Stenotrophomonas sp. KCTC 12332 1 0 species 246 0 1 1904944 Stenotrophomonas sp. LM091 1827305 Stenotrophomonas sp. MYb57 1 0 380 species species 256 1 2005046 Stenotrophomonas sp. WZN-1 0 1 83617 Stenotrophomonas nitritireducens 0 species 267 128780 Stenotrophomonas acidaminiphila 1 0 582 species 0 1 216778 Stenotrophomonas rhizophila species 214 0 995085 1 1936 species group 1936 species Stenotrophomonas maltophilia 40324 1 0 1510 genus 0 Xylella 1 2370 2 2 0 Xylella fastidiosa 2371 1 1508 species 0 275 17 Xanthomonas 1 338 genus 9973 Xanthomonas sacchari 56458 1 0 447 species 0 1 Xanthomonas oryzae 347 species 1417 247 species 366650 Xanthomonas alfalfae 1 0 0 1985254 Xanthomonas phaseoli 1 249 species 619 species Xanthomonas fragariae 48664 1 0 1 Xanthomonas vasicola 56459 0 species 230 0 1 56454 Xanthomonas hortorum species 337 1047 species Xanthomonas campestris 339 1 0 0 Xanthomonas axonopodis 53413 1 224 species 345 species 0 Xanthomonas vesicatoria 56460 1 Xanthomonas euvesicatoria 456327 1 0 184 species 312 species Xanthomonas perforans 442694 1 0 species 280 0 1 Xanthomonas albilineans 29447 species group 3097 0 2 643453 346 Xanthomonas citri 1 0 2658 species species 439 1 Xanthomonas fuscans 366648 0 0 Xanthomonas translucens 343 1 663 species 4 6 Nevskiales 1 1775403 0 order 321 0 1 568386 Sinobacteraceae family 1 2 2689614 0 family 314 genus 314 0 9 2 469322 1 Steroidobacter 0 465721 Steroidobacter denitrificans 1 305 species 0 44 19 1 Vibrionales 135623 order 28787 641 Vibrionaceae 1 43 99 0 28768 family Aliivibrio 1 511678 39 4 0 2865 genus species 1000 1 80852 Aliivibrio wodanis 0 1 Aliivibrio salmonicida 40269 0 species 870 956 species 0 668 Aliivibrio fischeri 1 1 246861 Grimontia 1 2 0 365 genus 0 1 673 Grimontia hollisae species 364 2092 genus 0 1 2042066 Paraphotobacterium 7 2 1 1755811 Paraphotobacterium marinum 0 species 2085 0 Vibrio 662 1 332 30 20061 genus 592 species Vibrio scophthalmi 45658 1 0 1404 species 672 Vibrio vulnificus 1 0 species 1168 1 190893 Vibrio coralliilyticus 0 species 555 0 1 Vibrio gazogenes 687 0 1 553239 Vibrio breoganii species 442 2025808 Vibrio qinghaiensis 1 0 452 species species 853 1 Vibrio cholerae 666 0 species group 8001 0 10 717610 1418 species Vibrio alginolyticus 663 1 0 2 2315253 0 species subgroup 1581 0 Vibrio diabolicus 50719 1 957 species 1 Vibrio antiquarius 150340 0 species 624 1132 species 0 670 Vibrio parahaemolyticus 1 691 Vibrio natriegens 1 0 873 species 0 190895 Vibrio rotiferianus 1 374 species species 404 1 Vibrio jasicida 766224 0 species 520 1 696485 Vibrio owensii 0 0 680 Vibrio campbellii 1 1015 species 684 species 669 Vibrio harveyi 1 0 0 Vibrio fluvialis 676 1 458 species 0 1891919 1 571 species group 571 species 29498 Vibrio tubiashii 1 0 348 species 29494 Vibrio furnissii 1 0 0 2 2614977 no rank 897 species 440 1 2014742 Vibrio sp. 2521-89 0 457 species 0 1116375 Vibrio sp. EJY3 1 52443 Vibrio tapetis 1 0 586 species 522 species Vibrio nigripulchritudo 28173 1 0 212663 Vibrio tasmaniensis 1 0 596 species 1 1435069 Vibrio tritonius 0 species 510 569 species 0 674 Vibrio mimicus 1 0 Vibrio hyugaensis 1534743 1 430 species 1 55601 Vibrio anguillarum 0 species 775 0 Photobacterium 657 1 4 13 3286 genus 38293 Photobacterium damselae 1 0 1990 species species 887 1 74109 Photobacterium profundum 0 species 396 0 1 1295392 Photobacterium gaetbulicola order 2259 6 3 1 1240482 Orbales 0 24 5 1 1240483 Orbaceae 0 family 2256 genus 1211 13 2 Gilliamella 1193503 1 0 1198 species 0 1196095 Gilliamella apicola 1 0 1335631 1 Frischella 8 2 1021 genus 0 1 1267021 Frischella perrara species 1013 subphylum 78460 0 195 68525 class 32288 122 33 1 28221 Deltaproteobacteria 0 order 2762 0 18 26 1 Desulfobacterales 213118 family 1541 0 9 10 1 213119 Desulfobacteraceae 0 28222 1 590 genus 590 species 28223 Desulfobacula toluolica 1 0 395 genus 896 Desulfococcus 1 3 12 0 species 195 1 181663 Desulfococcus oleovorans 0 species 188 0 1 897 Desulfococcus multivorans 273 genus 218207 Desulfatibacillum 1 2 7 0 0 1 259354 Desulfatibacillum alkenivorans species 266 2295 Desulfobacterium 1 3 2 0 273 genus 270 species 2296 Desulfobacterium autotrophicum 1 0 0 213121 1 Desulfobulbaceae 15 8 1195 family 424 genus 53318 1 0 species 424 0 1 65555 Desulfocapsa sulfexigens 0 1 Desulfurivibrio 427922 2 3 190 genus 1 427923 Desulfurivibrio alkaliphilus 0 species 187 0 2 2 893 Desulfobulbus 1 genus 149 147 species 0 1986146 Desulfobulbus sp. ORNL 1 genus 417 3 2 1 109168 Desulfotalea 0 414 species 84980 Desulfotalea psychrophila 1 0 24 36 1 Desulfovibrionales 213115 0 order 4283 0 1 213117 family 102 45662 1 0 102 genus species 102 1 45663 Desulfohalobium retbaense 0 1 213116 Desulfomicrobiaceae 4 3 0 272 family 9 3 Desulfomicrobium 898 1 0 genus 269 species 163 0 1 899 Desulfomicrobium baculatum 0 Desulfomicrobium orale 132132 1 97 species 3873 family 0 Desulfovibrionaceae 1 194924 18 22 209 genus 0 2582840 1 species 209 0 1 Desulfovibrio africanus 873 genus 1799 0 9 40 Desulfovibrio 872 1 0 1 901 Desulfovibrio piger species 132 0 1725232 Candidatus Desulfovibrio trichonymphae 1 55 species 123 species 58180 Desulfovibrio alaskensis 1 0 species 487 0 1 Desulfovibrio vulgaris 881 271 species 184917 Desulfovibrio magneticus 1 0 0 Desulfovibrio desulfuricans 876 1 469 species 0 44742 Desulfovibrio fairfieldensis 1 111 species 0 2593640 1 111 no rank 0 1 631220 Desulfovibrio sp. G11 species 111 2794998 1 0 256 genus 256 species Desulfovibrio salexigens 880 1 0 genus 963 0 2 3 41707 1 Lawsonia 29546 Lawsonia intracellularis 1 0 960 species 4 8 1 Pseudodesulfovibrio 2035811 0 genus 624 species 203 0 1 1716143 Pseudodesulfovibrio indicus species 160 0 1 57320 Pseudodesulfovibrio profundus 253 species 0 Pseudodesulfovibrio aespoeensis 182210 1 4045 order 1 Desulfuromonadales 69541 24 51 0 family 1423 0 9 11 1 213421 Desulfuromonadaceae 0 Desulfuromonas 890 1 12 3 627 genus 0 2614637 1 303 no rank species 303 0 1 Desulfuromonas sp. DDH964 1823759 Desulfuromonas soudanensis 1603606 1 0 312 species 0 9 5 1 18 Pelobacter genus 785 207 no rank 0 2620299 1 species 207 0 1 Pelobacter sp. SFB93 1842532 species 160 0 1 29543 Pelobacter propionicus species 164 0 1 19 Pelobacter carbinolicus species 245 1 Pelobacter acetylenicus 29542 0 0 1 213422 Geobacteraceae 14 10 2571 family 224 genus 392332 Geoalkalibacter 1 2 9 0 215 species 0 Geoalkalibacter subterraneus 483547 1 1 Geobacter 28231 11 49 0 2337 genus 234 species 0 313985 Geobacter lovleyi 1 2 2627627 0 no rank 579 299 species Geobacter sp. M18 443143 1 0 280 species Geobacter sp. M21 443144 1 0 199 species 345632 Geobacter pickeringii 1 0 species 312 0 1 Geobacter daltonii 1203471 species 140 0 1 1340425 Geobacter anodireducens 265 species 351604 Geobacter uraniireducens 1 0 0 28232 Geobacter metallireducens 1 226 species 225194 Geobacter bemidjiensis 1 0 182 species species 151 0 1 35554 Geobacter sulfurreducens 213462 1 Syntrophobacterales 18 10 0 726 order 3 3 213465 1 Syntrophobacteraceae 0 family 137 0 Syntrophobacter 29526 1 1 2 134 genus 133 species 0 119484 Syntrophobacter fumaroxidans 1 Syntrophaceae 1 213468 6 4 0 571 family 217 genus 1 2357 Desulfomonile 2 2 0 1 2358 Desulfomonile tiedjei 0 species 215 genus 214 1 60892 0 1 60893 Desulfobacca acetoxidans 0 species 214 136 genus Syntrophus 1 43773 2 2 0 1 Syntrophus aciditrophicus 316277 0 species 134 0 29 Myxococcales 1 167 37 18824 order suborder 11104 25 80811 0 0 9 43 Archangiaceae 39 1 family 3369 0 2 1 1 Archangium 47 genus 1220 0 Archangium gephyra 48 1 1219 species 0 2 4 40 Stigmatella 1 genus 534 species 530 0 1 Stigmatella aurantiaca 41 44 1 Melittangium 13 2 0 728 genus 1 83453 Melittangium boletus 0 species 715 42 1 Cystobacter 2 6 0 844 genus species 838 0 1 43 Cystobacter fuscus 0 1 2 Vulgatibacteraceae 1 1524213 family 365 1524214 1 0 364 genus 1 Vulgatibacter incomptus 1391653 0 species 364 11 9 Myxococcaceae 1 31 0 family 5145 0 3 22 83461 1 Corallococcus genus 1485 1 Myxococcus macrosporus 35 0 species 673 1 184914 Corallococcus coralloides 0 species 790 Myxococcus 32 1 5 83 0 3649 genus 597 species Myxococcus xanthus 34 1 0 0 1 83455 Myxococcus stipitatus species 703 0 1 1297742 Myxococcus hansupus species 780 0 Myxococcus fulvus 33 1 1486 species 0 1 1524215 Anaeromyxobacteraceae 6 5 2225 family 0 4 28 Anaeromyxobacter 1 161492 genus 2219 161493 Anaeromyxobacter dehalogenans 1 0 1031 species 2 2620896 0 no rank 1160 species 595 0 1 404589 Anaeromyxobacter sp. Fw109-5 565 species 0 Anaeromyxobacter sp. K 447217 1 0 3 224462 suborder 1417 1417 family 0 Kofleriaceae 1 224464 7 3 1410 genus 0 1 162027 Haliangium 2 24 Haliangium ochraceum 80816 1 0 1386 species 80812 8 0 6136 suborder 0 1055686 1 Sandaracinaceae 3 3 1263 family 0 6 2 1055688 1 Sandaracinus genus 1260 Sandaracinus amylolyticus 927083 1 0 1254 species family 4873 0 5 38 Polyangiaceae 49 1 0 2 12 39643 1 Sorangium genus 3926 species 3914 1 56 Sorangium cellulosum 0 genus 909 2 5 Chondromyces 50 1 0 1 52 Chondromyces crocatus 0 species 904 1305 order 213113 4 0 1305 family 0 Desulfurellaceae 1 117942 13 4 2 2 Hippea 84404 1 0 genus 381 1 Hippea maritima 84405 0 species 379 1 33001 0 genus 911 911 species 33002 Desulfurella acetivorans 1 0 0 1 4 453227 Desulfarculales 1 order 310 0 3 1 453228 Desulfarculaceae 1 family 309 2 9 1 Desulfarculus 453229 0 genus 308 299 species 0 Desulfarculus baarsii 453230 1 40 73 1 29547 Epsilonproteobacteria 0 class 46172 0 1 Campylobacterales 213849 66 90 45219 order family 1649 0 5 2771471 1491 genus 0 202746 1 Sulfurimonas 17 3 species 864 0 1 Sulfurimonas denitrificans 39766 0 1 Sulfurimonas autotrophica 202747 species 610 2 1 1 Sulfuricurvum 286130 0 genus 158 157 species 148813 Sulfuricurvum kujiense 1 0 family 705 5 2771472 0 200 genus 0 269260 Nitratifractor 1 1 2 Nitratifractor salsuginis 269261 1 0 199 species genus 505 0 3 1 1 265570 Sulfurovum 263 species 0 Sulfurovum lithotrophicum 206403 1 1 2646778 0 no rank 241 1 387093 Sulfurovum sp. NBC37-1 0 species 241 Campylobacteraceae 1 72294 83 41 0 37439 family 3483 genus 57665 1 Sulfurospirillum 65 9 0 species 461 1 44674 Sulfurospirillum barnesii 0 0 2618290 3 1568 no rank species 502 0 1 Sulfurospirillum sp. SL2-1 1986224 579 species 0 1581011 Sulfurospirillum sp. UCH001 1 487 species Sulfurospirillum sp. JPD-1 220622 1 0 501 species 0 65553 Sulfurospirillum deleyianum 1 species 355 1 Sulfurospirillum multivorans 66821 0 1 Sulfurospirillum halorespirans 194424 0 species 338 0 Sulfurospirillum cavolei 366522 1 195 species 2321108 5 0 10276 no rank 2503 no rank 0 2321207 1 0 1 944547 Arcobacter sp. L species 2503 5239 genus 28196 Arcobacter 1 3 72 0 0 1 28197 Arcobacter butzleri species 3000 2167 species 0 28199 Arcobacter nitrofigilis 1 2321187 1 0 2534 genus 2534 species 0 1850254 Arcobacter sp. LPB0137 1 23597 genus 1 Campylobacter 194 26 179 0 0 Campylobacter curvus 200 1 185 species species 515 0 1 522485 Campylobacter avium 0 827 Campylobacter ureolyticus 1 1088 species 121 species Campylobacter gracilis 824 1 0 Campylobacter cuniculorum 374106 1 0 722 species Campylobacter iguaniorum 1244531 1 0 488 species species 1021 0 1 Campylobacter subantarcticus 497724 0 1 Campylobacter peloridis 488546 species 930 no rank 2902 0 4 2593542 0 1500960 Campylobacter sp. RM16704 1 1004 species 0 1 Campylobacter sp. RM8964 1660074 species 748 508 species 0 Campylobacter sp. RM6137 1660073 1 642 species 0 Campylobacter sp. RM12175 1660076 1 195 Campylobacter coli 1 0 1658 species species 1155 0 1 Campylobacter volucris 1031542 0 1 198 Campylobacter hyointestinalis species 725 species 2768 0 1 Campylobacter lari 201 1402 species 1965231 Campylobacter pinnipediorum 1 0 468 species 28898 Campylobacter helveticus 1 0 0 1 Campylobacter lanienae 75658 species 423 2065 species 0 197 Campylobacter jejuni 1 0 1 206 Campylobacter sputorum species 1478 1187 species 0 Campylobacter insulaenigrae 260714 1 1001 species 0 Campylobacter fetus 196 1 525 species 199 Campylobacter concisus 1 0 1 Campylobacter hominis 76517 0 species 591 5336 family 1 Helicobacteraceae 72293 14 12 0 5100 genus Helicobacter 1 209 34 12 0 0 Helicobacter acinonychis 212 1 180 species species 213 0 1 217 Helicobacter mustelae 1 Helicobacter cetorum 138563 0 species 562 232 no rank 2593540 1 0 species 232 1 222136 Helicobacter sp. MIT 01-6242 0 species 401 0 1 37372 Helicobacter bilis 284 species Helicobacter typhlonius 76936 1 0 0 1 32025 Helicobacter hepaticus species 513 0 210 Helicobacter pylori 1 1884 species species 164 1 Helicobacter felis 214 0 0 1 Helicobacter himalayensis 1591088 species 291 species 342 1 Helicobacter cinaedi 213 0 224 genus 0 843 1 0 Wolinella succinogenes 844 1 224 species 0 2 6 235899 1 Nautiliales order 913 family 271 0 2 2795691 genus 271 2 2 269258 Nitratiruptor 1 0 0 1 2624044 no rank 269 species 269 1 Nitratiruptor sp. SB155-2 387092 0 family 640 3 3 224467 1 Nautiliaceae 0 Nautilia 191291 1 2 3 0 637 genus 1 Nautilia profundicola 244787 0 species 634 0 28211 1 Alphaproteobacteria 412 565 1120101 class 498 order 2800059 2 0 0 2 2800061 family 498 genus 498 2 9 74317 Maricaulis 1 0 0 74318 Maricaulis maris 1 489 species 78559 order 0 1 204455 Rhodobacterales 143 92 78416 family 31989 1 Rhodobacteraceae 91 724 0 genus 770 0 2 3 Defluviimonas 1 1097466 Defluviimonas alba 1335048 1 0 767 species 0 5 14 1 875170 Celeribacter genus 3499 727 species 0 Celeribacter ethanolicus 1758178 1 0 1411902 Celeribacter manganoxidans 1 753 species 695 species 0 1208324 Celeribacter indicus 1 Celeribacter marinus 1397108 1 0 1310 species genus 367 7 2 1 Pannonibacter 227873 0 0 1 121719 Pannonibacter phragmitetus species 360 302485 1 Phaeobacter 117 5 0 8249 genus Phaeobacter inhibens 221822 1 0 3091 species 1580596 Phaeobacter piscinae 1 0 2026 species species 922 1 1844006 Phaeobacter porticola 0 species 2093 0 1 Phaeobacter gallaeciensis 60890 0 2 4 1284657 Planktomarina 1 genus 12423 0 Planktomarina temperata 1284658 1 12419 species 1914 genus 1 Ruegeria 97050 3 30 0 2625375 1 0 850 no rank 0 Ruegeria sp. TM1040 292414 1 850 species species 1034 1 Ruegeria pomeroyi 89184 0 722 genus 0 Roseibacterium 159345 1 2 10 species 712 1 159346 Roseibacterium elongatum 0 3 2 Dinoroseobacter 1 309512 0 genus 764 species 761 1 215813 Dinoroseobacter shibae 0 1579315 1 0 3049 genus Halocynthiibacter arcticus 1579316 1 0 3049 species 188905 Jannaschia 1 2 1 0 868 genus 867 no rank 0 2645469 1 290400 Jannaschia sp. CCS1 1 0 867 species genus 3 1 Loktanella 245186 0 genus 1005 2 1 1 Tateyamaria 299261 0 0 1 Tateyamaria omphalii 299262 species 1004 genus 939 1 1649279 0 0 Ruegeria mobilis 379347 1 939 species 2748 genus 34008 Rhodovulum 1 4 51 0 1381 no rank 0 2631432 2 species 692 0 1 Rhodovulum sp. MB263 308754 1564506 Rhodovulum sp. P5 1 0 689 species 0 35806 Rhodovulum sulfidophilum 1 1316 species genus 485 0 1 2 285107 Thioclava 1 484 species 1915078 Thioclava nitratireducens 1 0 1 Paracoccus 265 9 101 0 4845 genus 0 1 34003 Paracoccus aminophilus species 701 703 no rank 246570 1 0 0 1 Paracoccus sp. BM15 1529068 species 703 species 590 1 Paracoccus denitrificans 266 0 0 Paracoccus yeei 147645 1 679 species 0 1945662 Paracoccus contaminans 1 428 species 2065379 Paracoccus sp. CBA4604 1 0 579 species 601 species Paracoccus zhejiangensis 1077935 1 0 Paracoccus aminovorans 34004 1 0 463 species 1153 genus 0 Leisingera 1 191028 2 2 species 1151 0 1 Leisingera methylohalidivorans 133924 2 263377 0 genus 1613 species 713 1 Thiobacimonas profunda 1229727 0 no rank 900 0 1 2640570 species 900 1 Yangia sp. CCB-MM3 1792508 0 2 11 Marivivens 1759396 1 0 genus 933 1 2622455 0 no rank 922 0 1 Marivivens sp. JLT3646 1920883 species 922 genus 819 2 2 360528 Pelagibaca 1 0 0 1250539 Pelagibaca abyssi 1 817 species 58840 2 0 1434 no rank 0 2033435 Rhodobacteraceae bacterium QY30 1 483 species 1 Rhodobacteraceae bacterium 1904441 0 species 951 2 1 1 74030 Roseovarius 0 genus 1315 1 Roseovarius mucosus 215743 0 species 1314 0 1 Thalassococcus 436357 genus 7 0 2 11 1 74032 Antarctobacter genus 1122 0 Antarctobacter heliothermus 74033 1 1111 species 0 2211641 1 1428 genus species 1428 1 245188 Loktanella vestfoldensis 0 Labrenzia 1 478070 35 4 0 1360 genus 0 2648686 2 858 no rank 1 Labrenzia sp. VG12 2021862 0 species 405 1674922 Labrenzia sp. CP4 1 0 453 species 0 187304 Labrenzia aggregata 1 467 species 0 1609958 Confluentimicrobium 1 1 2 929 genus no rank 928 0 1 2643318 928 species Confluentimicrobium sp. EMB200-NS6 1609966 1 0 83 4 1 53945 Octadecabacter 0 genus 9971 1113 species 0 1458307 Octadecabacter temperatus 1 4794 species Octadecabacter antarcticus 1217908 1 0 1 Octadecabacter arcticus 53946 0 species 3981 0 3 2 1 367771 Marinovum genus 1141 1 Marinovum algicola 42444 0 species 1138 0 1 119541 genus 867 867 species 0 Rhodobaca barguzinensis 441209 1 0 1 Ketogulonicigenium 92944 3 14 1208 genus Ketogulonicigenium robustum 92947 1 0 529 species species 665 1 Ketogulonicigenium vulgare 92945 0 0 Rhodobacter 1 1060 39 5 2939 genus species 557 0 1 1061 Rhodobacter capsulatus 0 196779 2 1213 no rank species 546 1 2033869 Rhodobacter sp. CZR27 0 667 species 1850250 Rhodobacter sp. LPB0142 1 0 1130 species 0 1063 Rhodobacter sphaeroides 1 genus 3654 3 34 2433 1 Roseobacter 0 1 42443 Roseobacter litoralis 0 species 2016 0 1 Roseobacter denitrificans 2434 species 1604 2 7 58842 Sagittula 1 0 genus 628 2624628 1 0 621 no rank 621 species 0 Sagittula sp. P11 2009329 1 12 3 Sulfitobacter 60136 1 0 genus 2521 1 196795 0 no rank 983 983 species Sulfitobacter sp. AM1-D1 1917485 1 0 1 1402135 Sulfitobacter pseudonitzschiae 0 species 1526 28 9 Pelagibacterales 54526 1 0 order 862617 Candidatus Fonsibacter 1 2045213 2 33 0 12966 genus 12933 species 1925548 Candidatus Fonsibacter ubiquis 1 0 849623 family 0 Pelagibacteraceae 1 1655514 70 6 33 3 1 Candidatus Pelagibacter 198251 0 genus 765284 720386 species 198252 Candidatus Pelagibacter ubique 1 0 0 1 2647897 no rank 44865 0 1002672 Candidatus Pelagibacter sp. IMCC9063 1 44865 species 84269 no rank 0 1655516 2 1 alpha proteobacterium HIMB5 859653 0 species 78253 6016 species alpha proteobacterium HIMB59 744985 1 0 1 8 1 1921002 Holosporales 0 order 2746 0 1777752 1 Candidatus Paracaedibacteraceae 2 6 706 family 0 1 1521255 genus 700 species 700 1 91604 Candidatus Paracaedibacter acanthamoebae 0 0 Holosporaceae 44746 1 2 2 928 family 0 204454 1 926 no rank 0 1 86106 endosymbiont of Acanthamoeba sp. UWC8 species 926 0 1 2100208 Caedimonadaceae 2 3 1111 family 1109 genus Candidatus Nucleicultrix 1509243 1 2 3 0 0 1 1509244 Candidatus Nucleicultrix amoebiphila species 1106 0 10 4 1191478 1 Magnetococcales order 388 378 family 1 1191479 Magnetococcaceae 3 2 0 376 genus Magnetococcus 162171 1 2 2 0 0 1 Magnetococcus marinus 1124597 species 374 4 6 255473 1 Parvularculales 0 order 756 0 2 3 1 Parvularculaceae 255474 family 750 Parvularcula 208215 1 20 2 0 748 genus 1 Parvularcula bermudensis 208216 0 species 728 0 1 204458 Caulobacterales 35 20 5221 order Caulobacteraceae 1 76892 19 92 0 5186 family genus 314 2 6 Asticcacaulis 1 76890 0 species 308 1 Asticcacaulis excentricus 78587 0 0 Caulobacter 75 1 6 41 2161 genus 0 1 Caulobacter mirabilis 69666 species 361 0 69395 Caulobacter henricii 1 300 species 0 1 Caulobacter vibrioides 155892 species 647 0 88688 Caulobacter segnis 1 363 species 449 no rank 0 2648921 1 species 449 1 366602 Caulobacter sp. K31 0 genus 431 2 3 Phenylobacterium 20 1 0 species 428 1 Phenylobacterium zucineum 284016 0 328 no rank 81440 1 0 species 328 0 1 1759059 Caulobacteraceae bacterium OTSz_A_272 1860 genus 41275 Brevundimonas 1 7 67 0 0 1 74313 Brevundimonas subvibrioides species 487 Brevundimonas naejangsanensis 588932 1 0 236 species 0 1 41276 Brevundimonas vesicularis species 263 807 no rank 2622653 3 0 species 223 1 Brevundimonas sp. GW460-12-10-14-LB2 1827469 0 244 species 0 1532555 Brevundimonas sp. DS20 1 Brevundimonas sp. LM2 1938605 1 0 340 species 22869 order 0 204457 1 Sphingomonadales 110 81 41297 1 Sphingomonadaceae 179 58 0 17747 family 303 genus 150203 1 0 no rank 303 0 1 2626550 species 303 1 Blastomonas sp. RAC04 1842535 0 9 2 1 72173 Citromicrobium 0 genus 197 0 1 2630544 no rank 188 0 1 Citromicrobium sp. JL477 1634516 species 188 5266 genus 0 Sphingomonas 1 13687 113 15 0 Sphingomonas sanxanigenens 397260 1 477 species species 327 1 Sphingomonas hengshuiensis 1609977 0 0 93064 Sphingomonas koreensis 1 346 species species 378 1 1560345 Sphingomonas panacis 0 1900 no rank 196159 6 0 1 Sphingomonas sp. NIC1 1961362 0 species 296 species 338 1 Sphingomonas sp. LK11 1390395 0 0 1 Sphingomonas sp. KC8 1030157 species 279 0 1 Sphingomonas sp. Cra20 1327635 species 398 0 1 Sphingomonas sp. MM-1 745310 species 302 287 species 0 Sphingomonas sp. LM7 1938607 1 species 368 0 1 152682 Sphingomonas melonis 1 160791 Sphingomonas wittichii 504 2 0 976 species Sphingomonas sp. DC-6 1283312 1 0 472 strain 0 1 1549858 Sphingomonas taxi species 381 genus 254 1 2685927 0 species 254 0 1 1921510 Sphingomonas sp. JJ-A5 387 genus 2709685 1 0 1 Sphingorhabdus flavimaris 266812 0 species 387 3710 genus 165695 1 Sphingobium 102 15 0 205 species Sphingobium baderi 1332080 1 0 species 243 0 1 Sphingobium hydrophobicum 1673076 species 481 1 13690 Sphingobium yanoikuyae 0 species 254 1 120107 Sphingobium cloacae 0 0 2611147 6 1594 no rank 0 627192 Sphingobium sp. SYK-6 1 304 species 219 species 0 Sphingobium sp. EP60837 1855519 1 1 Sphingobium sp. YBL2 484429 0 species 258 1 Sphingobium sp. MI1205 407020 0 species 256 296 species Sphingobium sp. TKS 1315974 1 0 0 1843368 Sphingobium sp. RAC03 1 261 species 241 species 0 332056 Sphingobium japonicum 1 1 Sphingobium herbicidovorans 76947 0 species 201 194 species 0 Sphingobium indicum 332055 1 46429 Sphingobium chlorophenolicum 1 0 195 species 0 Sphingorhabdus 1 1434046 3 44 896 genus 852 no rank 2614947 2 0 0 1 Sphingorhabdus sp. M41 1806885 species 461 1 2077182 Sphingorhabdus sp. YGSMI21 0 species 391 2 9 Rhizorhabdus 1649486 1 0 genus 353 1 Rhizorhabdus dicambivorans 1850238 0 species 344 541 1 Zymomonas 2 4 0 1307 genus 0 542 Zymomonas mobilis 1 1303 species 3642 genus 0 Sphingopyxis 1 165697 10 75 1 267128 Sphingopyxis granuli 0 species 347 298 species 1515612 Sphingopyxis fribergensis 1 0 species 599 0 1 33050 Sphingopyxis macrogoltabida species 322 1 Sphingopyxis terrae 33052 0 Sphingopyxis alaskensis 117207 1 0 255 species 1746 no rank 2614943 4 0 0 1 Sphingopyxis sp. LPB0140 1913578 species 854 0 1 1357916 Sphingopyxis sp. QXT-31 species 362 277 species 1866325 Sphingopyxis sp. MG 1 0 Sphingopyxis sp. 113P3 292913 1 0 253 species 1253 genus Novosphingobium 1 165696 31 5 0 0 1 158500 Novosphingobium resinovorum species 418 255 no rank 0 2644732 1 702113 Novosphingobium sp. PP1Y 1 0 255 species species 253 0 1 48935 Novosphingobium aromaticivorans Novosphingobium pentaromativorans 205844 1 0 296 species 335929 1 Erythrobacteraceae 22 66 0 5012 family 0 1855416 2 334 genus 1 Erythrobacter flavus 192812 0 species 201 133 species Erythrobacter seohaensis 266951 1 0 2800788 6 0 1465 no rank 0 49 3 1 Porphyrobacter 1111 genus 570 no rank 521 2 2683265 0 249 species 0 Porphyrobacter sp. LM 6 1896196 1 species 272 1 2023229 Porphyrobacter HT-58-2 0 0 1 Erythrobacter 1041 3 109 895 genus 236 species Porphyrobacter neustonensis 1112 1 0 0 39960 Erythrobacter litoralis 1 550 species 409 genus 2800682 1 0 species 409 0 1 645517 Altererythrobacter namhicola genus 526 3 30 Croceicoccus 1 1295327 0 273 species 0 450378 Croceicoccus marinus 1 1 1348774 Croceicoccus naphthovorans 0 species 223 genus 192 0 1 2800685 192 species 543877 Altererythrobacter marensis 1 0 2800681 2 0 922 genus 0 1 Erythrobacter gangjinensis 502682 species 434 0 1 1648404 Erythrobacter atlanticus species 488 321 genus 0 2800686 2 Altererythrobacter mangrovi 1982042 1 0 159 species 692370 Altererythrobacter dongtanensis 1 0 162 species 777 genus 361177 Altererythrobacter 1 4 103 0 230 species Altererythrobacter atlanticus 1267766 1 0 162 species 0 361183 Altererythrobacter epoxidivorans 1 282 species 476157 Altererythrobacter ishigakiensis 1 0 80986 order 0 1 356 Rhizobiales 210 400 0 119043 1 Rhodobiaceae 1 3 469 family 2 11 256616 Parvibaculum 1 0 genus 468 1 Parvibaculum lavamentivorans 256618 0 species 457 family 987 20 4 Chelatococcaceae 1 2036754 0 genus 967 0 3 23 28209 Chelatococcus 1 species 369 0 1 Chelatococcus daeguensis 444444 no rank 575 0 1 2638111 575 species Chelatococcus sp. CO-6 1702325 1 0 16 20 118882 1 Brucellaceae 0 family 3244 1290 genus 1 Brucella 234 389 14 0 no rank 373 0 4 2632610 0 1 1149952 Brucella sp. 09RB8471 species 124 species 115 0 1 1885919 Brucella sp. 141012304 19 species Brucella sp. 2002734562 1891098 1 0 1 1844051 Brucella sp. 09RB8910 0 species 115 Brucella melitensis 29459 1 0 54 species species 40 0 1 235 Brucella abortus species 68 1 Brucella ceti 120577 0 28 species 444163 Brucella microti 1 0 1 Brucella canis 36855 0 species 74 0 1 120576 Brucella pinnipedialis species 74 11 species Brucella ovis 236 1 0 species 75 0 1 Brucella suis 29461 0 1 Brucella vulpis 981386 species 104 genus 1938 36 5 Ochrobactrum 528 1 0 species 477 0 1 571256 Ochrobactrum pituitosum 0 Ochrobactrum sp. A44 271865 1 481 species 440 species 529 Ochrobactrum anthropi 1 0 0 1 419475 Ochrobactrum pseudogrignonense species 504 family 20712 0 18 35 772 Bartonellaceae 1 genus 20677 0 426 17 773 Bartonella 1 1130 species 0 1686310 Bartonella apis 1 38323 Bartonella henselae 1 0 1320 species 1177 species Bartonella quintana 803 1 0 1 774 Bartonella bacilliformis 0 species 1515 0 Bartonella ancashensis 1318743 1 1105 species 0 Bartonella grahamii 33045 1 1116 species 0 Bartonella clarridgeiae 56426 1 1383 species 0 2645622 6 8168 no rank 0 1 Bartonella sp. 1-1C 515256 species 1355 species 1296 0 1 Bartonella sp. JB63 1933907 Bartonella sp. WD16.2 1933904 1 0 1522 species 1 Bartonella sp. JB15 1933906 0 species 1295 0 1933912 Bartonella sp. Raccoon60 1 1366 species 1334 species 1933910 Bartonella sp. A1379B 1 0 species 1310 0 1 Bartonella vinsonii 33047 1 Bartonella tribocorum 85701 0 species 1162 species 865 0 1 Bartonella australis 388640 family 1501 0 7 10 Aurantimonadaceae 255475 1 genus 1113 0 4 41 293088 Martelella 1 Martelella mediterranea 293089 1 0 430 species 1486262 Martelella endophytica 1 0 271 species 0 2629616 1 371 no rank species 371 0 1 686597 Martelella sp. AD-3 2 11 414371 1 Aureimonas 0 genus 378 no rank 367 1 2615206 0 species 367 1 Aureimonas sp. AU20 1349819 0 0 1 Xanthobacteraceae 335928 7 20 1436 family genus 477 2 4 Starkeya 1 152053 0 species 473 1 921 Starkeya novella 0 0 8 2 6 Azorhizobium 1 genus 400 0 1 7 Azorhizobium caulinodans species 392 539 genus 0 1 Xanthobacter 279 16 2 species 523 0 1 280 Xanthobacter autotrophicus 0 146 53 Rhizobiaceae 1 82115 family 21604 5398 genus Liberibacter 1 34019 32 6 0 species 906 1 34021 Candidatus Liberibacter asiaticus 0 1134 species 0 309868 Candidatus Liberibacter americanus 1 1 Liberibacter crescens 1273132 0 species 1365 1 34020 Candidatus Liberibacter africanus 0 species 950 1011 species 556287 Candidatus Liberibacter solanacearum 1 0 0 34 227290 no rank 11763 2 4 1 Neorhizobium 1525371 0 genus 486 482 species Neorhizobium galegae 399 1 0 0 7 59 357 1 Agrobacterium genus 2996 373 Agrobacterium vitis 1 0 323 species 1 Agrobacterium rhizogenes 359 0 species 275 1759 species group 1183400 2 0 0 Agrobacterium tumefaciens 358 1 1494 species 1 Agrobacterium fabrum 1176649 0 species 265 580 no rank 2632611 2 0 species 268 1 Agrobacterium sp. H13-3 861208 0 312 species Agrobacterium sp. RAC06 1842536 1 0 573 25 1 379 Rhizobium 0 genus 8281 0 396 Rhizobium phaseoli 1 901 species 0 19 2613769 no rank 3116 species 61 1 Rhizobium sp. N731 1703966 0 1 Rhizobium sp. N1314 1703961 0 species 61 0 1 1703960 Rhizobium sp. N113 species 7 1869170 Rhizobium sp. S41 1 0 221 species Rhizobium sp. N871 1703968 1 0 2 species 0 424182 Rhizobium sp. IRBG74 1 301 species species 260 0 1 Rhizobium sp. NXC14 1981173 211 species 1125847 Rhizobium sp. NT-26 1 0 9 species 1703962 Rhizobium sp. N1341 1 0 species 211 0 1 Rhizobium sp. IE4771 1301032 4 species Rhizobium sp. N741 1703967 1 0 1 Rhizobium sp. TAL182 2020313 0 species 71 0 Rhizobium sp. NXC24 2048897 1 284 species 0 Rhizobium sp. N324 1703969 1 283 species 173 species 0 2020311 Rhizobium sp. Kim5 1 0 1 Rhizobium sp. ACO-34A 1571470 species 282 0 1 Rhizobium sp. Y9 1914541 species 232 206 species 2020312 Rhizobium sp. CIAT894 1 0 species 237 0 1 Rhizobium sp. 10195 2028343 species 1944 0 1 384 Rhizobium leguminosarum 437 species Rhizobium gallicum 56730 1 0 species 273 0 1 Rhizobium tropici 398 species 1037 1 29449 Rhizobium etli 0 227292 10 0 3727 no rank genus 3064 43 7 28105 1 Sinorhizobium 0 0 2613772 2 674 no rank 0 794846 Sinorhizobium sp. CCBAU 05631 1 292 species 1842534 Sinorhizobium sp. RAC02 1 0 382 species 352 species 0 194963 Sinorhizobium americanum 1 1 663276 0 species group 893 species 893 0 1 Sinorhizobium fredii 380 684 species 382 Sinorhizobium meliloti 1 0 0 Sinorhizobium medicae 110321 1 418 species 0 Ensifer 106591 1 3 12 663 genus 283 species Ensifer sojae 716925 1 0 106592 Ensifer adhaerens 1 0 368 species 570 genus 0 Shinella 323620 1 2 7 no rank 563 1 2643062 0 563 species Shinella sp. HZN7 879274 1 0 family 4047 28 19 1 45401 Hyphomicrobiaceae 0 263 genus 0 Filomicrobium 1 119044 5 2 Candidatus Filomicrobium marinum 1608628 1 0 258 species 1023 genus 0 1 Hyphomicrobium 81 4 33 species 399 0 1 Hyphomicrobium denitrificans 53399 0 2619925 1 361 no rank 1 717785 Hyphomicrobium sp. MC1 0 species 361 species 230 1 Hyphomicrobium nitrativorans 1427356 0 0 2 14 1 Rhodomicrobium 1068 genus 285 0 1 Rhodomicrobium vannielii 1069 species 271 412 genus 0 1 59282 Blastochloris 9 2 species 403 0 1 Blastochloris viridis 1079 0 Devosia 1 46913 43 4 1145 genus 0 196773 3 1102 no rank 1736675 Devosia sp. A16 1 0 401 species species 327 1 Devosia sp. I507 2083786 0 374 species 0 1643450 Devosia sp. H5989 1 0 Rhodoplanes 29407 1 2 3 483 genus 480 no rank 2619116 1 0 480 species 674703 Rhodoplanes sp. Z2-YC6860 1 0 0 Pelagibacterium 1 1082930 2 15 408 genus 0 Pelagibacterium halotolerans 531813 1 393 species 0 6 119042 no rank 1109 genus 351 0 9 2 1 Pseudorhodoplanes 1734920 342 species 0 1235591 Pseudorhodoplanes sinuspersici 1 413 genus 1 1484898 Methyloceanibacter 2 29 0 384 species Methyloceanibacter caenitepidi 1384459 1 0 345 genus Hartmannibacter 1 1572860 5 2 0 340 species Hartmannibacter diazotrophicus 1482074 1 0 0 Methylobacteriaceae 1 119045 22 15 6822 family 2282523 3 0 2355 genus 0 29429 Methylobacterium zatmanii 1 298 species 1348 species 408 Methylobacterium extorquens 1 0 223967 Methylobacterium populi 1 0 709 species 0 2 1 Microvirga 1 186650 genus 383 0 1882682 Microvirga ossetica 1 382 species 0 Methylobacterium 407 1 9 136 4062 genus 416 species 0 Methylobacterium oryzae 334852 1 562 species 0 270351 Methylobacterium aquaticum 1 0 Methylobacterium nodulans 114616 1 525 species 3 2615210 0 no rank 1478 0 1 Methylobacterium sp. 4-46 426117 species 727 species 341 0 1 925818 Methylobacterium sp. AMS5 1 1479019 Methylobacterium sp. C1 0 species 410 Methylobacterium radiotolerans 31998 1 0 482 species species 463 1 Methylobacterium phyllosphaerae 418223 0 family 5813 37 20 69277 1 Phyllobacteriaceae 0 0 2 13 449972 1 Chelativorans genus 336 no rank 323 1 2643807 0 1 266779 Chelativorans sp. BNC1 0 species 323 2 9 Nitratireductor 245876 1 0 genus 461 species 452 1 472175 Nitratireductor basaltis 0 0 Aminobacter 1 31988 13 2 395 genus 0 1 Aminobacter aminovorans 83263 species 382 0 1 28100 Phyllobacterium 10 2 384 genus 0 1 1867719 Phyllobacterium zundukense species 374 genus 599 0 14 2 1 274591 Hoeflea 0 2614931 1 585 no rank 0 Hoeflea sp. IMCC20628 1620421 1 585 species 3601 genus Mesorhizobium 1 68287 9 153 0 0 Mesorhizobium ciceri 39645 1 591 species 444 species 0 2066070 Mesorhizobium japonicum 1 1 Mesorhizobium loti 381 0 species 455 1 Mesorhizobium australicum 536018 0 species 435 366 species 0 593909 Mesorhizobium opportunistum 1 390 species 71433 Mesorhizobium amorphae 1 0 0 Mesorhizobium sp. B7 1670800 1 350 species 325217 1 0 417 no rank species 417 0 1 278153 Mesorhizobium sp. WSM1497 Bradyrhizobiaceae 1 41294 26 94 0 10788 family 0 153 11 1 374 Bradyrhizobium genus 5284 0 1 1355477 Bradyrhizobium diazoefficiens species 704 Bradyrhizobium oligotrophicum 44255 1 0 484 species 1 1274631 Bradyrhizobium icense 0 species 353 0 6 2631580 no rank 2831 503 species 2057741 Bradyrhizobium sp. SK17 1 0 species 481 0 1 114615 Bradyrhizobium sp. ORS 278 0 1 Bradyrhizobium sp. ORS 285 115808 species 480 0 1 Bradyrhizobium sp. CCGE-LA001 1223566 species 407 1 376 Bradyrhizobium sp. 0 species 414 546 species 0 288000 Bradyrhizobium sp. BTAi1 1 375 Bradyrhizobium japonicum 1 0 759 species 306 genus 40136 Oligotropha 1 2 5 0 Oligotropha carboxidovorans 40137 1 0 301 species 485 genus 0 1 911 Nitrobacter 29 3 173 species 0 Nitrobacter winogradskyi 913 1 0 1 912 Nitrobacter hamburgensis species 283 0 Variibacter 1 1649510 6 2 362 genus species 356 0 1 Variibacter gotjawalensis 1333996 2619 genus 1073 Rhodopseudomonas 1 30 2 0 0 1076 Rhodopseudomonas palustris 1 2589 species 0 1 Bosea 85413 5 47 1638 genus 3 2653178 0 no rank 1192 414 species 2015316 Bosea sp. AS-1 1 0 species 352 0 1 1792307 Bosea sp. PAMC 26642 1 Bosea sp. RAC05 1842539 0 species 426 399 species Bosea vaviloviae 1526658 1 0 1274 family 0 1 31993 Methylocystaceae 6 14 0 9 2 1 Methylosinus 425 genus 543 species 534 0 1 426 Methylosinus trichosporium 717 genus 0 Methylocystis 133 1 3 24 327 no rank 0 2625913 1 0 187303 Methylocystis sp. SC2 1 327 species Methylocystis bryophila 655015 1 0 366 species 0 5 1 Beijerinckiaceae 1 45404 family 780 0 2 4 532 Beijerinckia 1 genus 405 401 species 0 533 Beijerinckia indica 1 genus 374 7 2 1 120652 Methylocella 0 367 species 0 Methylocella silvestris 199596 1 42 55 Rickettsiales 1 766 0 order 30377 family 767 0 2 1328881 1 Candidatus Midichloria 411566 10 2 0 767 genus 757 species 0 234827 Candidatus Midichloria mitochondrii 1 family 13067 0 28 32 Rickettsiaceae 775 1 genus 889 0 5 2 Candidatus Phycorickettsia 1 2115980 species 884 0 1 2115978 Candidatus Phycorickettsia trachydisci 25 33988 0 tribe 12146 780 Rickettsia 1 889 23 0 10350 genus no rank 1185 1 114295 0 1185 species 0 Rickettsia endosymbiont of Bemisia tabaci 337479 1 2 1129742 0 species group 1975 1 33990 Rickettsia bellii 0 species 1231 species 744 0 1 Rickettsia canadensis 788 species group 3693 17 114277 0 372 species Rickettsia monacensis 109232 1 0 0 47589 Rickettsia peacockii 1 278 species 0 1 781 Rickettsia conorii species 48 species 127 0 1 35790 Rickettsia japonica 786 Rickettsia akari 1 0 496 species 135 species 0 33989 Rickettsia amblyommatis 1 78 species 0 35788 Rickettsia africae 1 0 1 Rickettsia heilongjiangensis 226665 species 123 1 33991 Rickettsia montanensis 0 species 125 0 1 Rickettsia felis 42862 species 547 0 1 Rickettsia rhipicephali 33992 species 180 89 species 0 Rickettsia rickettsii 783 1 0 1 787 Rickettsia australis species 701 96 species Rickettsia parkeri 35792 1 0 0 1105106 Rickettsia philipii 1 118 species 0 1 35791 Rickettsia massiliae species 134 species 46 1 35794 Rickettsia slovaca 0 0 2 114292 species group 2608 1 785 Rickettsia typhi 0 species 1293 0 Rickettsia prowazekii 782 1 1315 species genus 1796 3 2 Orientia 1 69474 0 Orientia tsutsugamushi 784 1 0 1793 species family 14281 23 41 942 1 Anaplasmataceae 0 4 10 Anaplasma 768 1 0 genus 887 species group 378 0 1 106179 948 Anaplasma phagocytophilum 1 0 378 species 277 species 769 Anaplasma centrale 1 0 0 1 770 Anaplasma marginale species 222 6 85 1 Ehrlichia 943 0 genus 6143 1 106181 0 no rank 993 1 391036 Ehrlichia sp. HF 0 species 993 0 4 106178 species group 5065 1374 species 944 Ehrlichia canis 1 0 1 Ehrlichia muris 35795 0 species 1140 species 1150 1 945 Ehrlichia chaffeensis 0 0 1 Ehrlichia ruminantium 779 species 1401 1040 genus 0 1 33993 Neorickettsia 4 29 Neorickettsia sennetsu 951 1 0 300 species 383 species 0 Neorickettsia helminthoeca 33994 1 1 Neorickettsia risticii 950 0 species 328 tribe 6170 8 952 0 0 172 8 Wolbachia 953 1 genus 6170 5998 no rank 0 2640676 7 species 841 0 1 Wolbachia sp. wRi 66084 species 646 1 Wolbachia endosymbiont of Onchocerca volvulus 77551 0 657 species Wolbachia endosymbiont of Brugia malayi 80849 1 0 1 246273 Wolbachia endosymbiont of Cimex lectularius 0 species 698 77038 Wolbachia endosymbiont of Drosophila simulans 1 0 1725 species species 794 0 1 Wolbachia endosymbiont of Drosophila melanogaster 163164 species 637 1 Wolbachia endosymbiont of Onchocerca ochengi 100901 0 1 1699067 0 no rank 2220 2220 species 0 1528098 Rickettsiales bacterium Ac37b 1 20843 order 1 Rhodospirillales 204441 65 152 0 0 85 33 Acetobacteraceae 433 1 family 8361 775 genus 0 Acidiphilium 522 1 20 3 1 524 Acidiphilium cryptum 0 species 383 0 1 Acidiphilium multivorum 62140 species 372 genus 161 0 2 2 91914 Asaia 1 159 species Asaia bogorensis 91915 1 0 0 441 1 Gluconobacter 3 6 785 genus Gluconobacter oxydans 442 1 0 496 species species 283 0 1 318683 Gluconobacter albidus 5 53 1 1434011 Komagataeibacter 0 genus 1112 Komagataeibacter xylinus 28448 1 0 367 species 0 33995 Komagataeibacter europaeus 1 202 species species 238 1 265960 Komagataeibacter nataicola 0 0 1177712 Komagataeibacter medellinensis 1 252 species 0 153497 1 318 genus 153496 Kozakia baliensis 1 0 318 species genus 850 0 3 19 1 125216 Roseomonas 1 2617492 0 no rank 415 0 Roseomonas sp. FDAARGOS_362 2018065 1 415 species 257708 Roseomonas gilardii 1 0 416 species 3185 genus 0 Acetobacter 434 1 8 63 1 Acetobacter pasteurianus 438 0 species 1089 species 256 0 1 446692 Acetobacter senegalensis 1076596 Acetobacter persici 1 0 465 species 346 species Acetobacter oryzifermentans 1633874 1 0 1 151157 0 subgenus 185 185 species 0 Acetobacter aceti 435 1 0 Acetobacter pomorum 65959 1 289 species 1 104102 Acetobacter tropicalis 0 species 492 1 2 Granulibacter 364409 1 0 genus 454 0 1 364410 Granulibacter bethesdensis species 453 221 genus 0 1602345 1 221 species Parasaccharibacter apium 1510841 1 0 genus 247 0 2 2 1 Gluconacetobacter 89583 species 245 1 33996 Gluconacetobacter diazotrophicus 0 0 2 1 320496 1 Neoasaia genus 168 167 species Neoasaia chiangmaiensis 320497 1 0 41295 1 Rhodospirillaceae 31 136 0 12330 family genus 1859 2 8 1263978 Candidatus Endolissoclinum 1 0 1 Candidatus Endolissoclinum faulkneri 1263979 0 species 1851 20 2 1 171436 Tistrella 0 genus 731 711 species 0 Tistrella mobilis 171437 1 563 genus 1543705 1 Nitrospirillum 2 11 0 1 Nitrospirillum amazonense 28077 0 species 552 1530 genus 168934 1 Thalassospira 3 25 0 Thalassospira sp. CSC3H3 2048283 1 0 801 species 0 1 Thalassospira xiamenensis 220697 species 704 0 7 2 Niveispirillum 1 1543704 genus 414 species 407 1 1612173 Niveispirillum cyanobacteriorum 0 0 1804663 1 Haematospirillum 2 9 370 genus 361 species 1549855 Haematospirillum jordaniae 1 0 genus 1810 79 5 13134 Magnetospirillum 1 0 no rank 712 2 2617991 0 333 species 0 1639348 Magnetospirillum sp. ME-1 1 0 Magnetospirillum sp. XM-1 1663591 1 379 species 84159 Magnetospirillum magneticum 1 0 409 species 55518 Magnetospirillum gryphiswaldense 1 0 610 species 3162 genus 191 1 Azospirillum 63 5 0 species 679 0 1 Azospirillum thiophilum 528244 1014 species 0 193 Azospirillum lipoferum 1 320 species Azospirillum humicireducens 1226968 1 0 Azospirillum brasilense 192 1 0 1086 species genus 346 2 5 1612157 1 Pararhodospirillum 0 0 1084 Pararhodospirillum photometricum 1 341 species 0 7 3 1081 1 Rhodospirillum genus 876 Rhodospirillum rubrum 1085 1 0 467 species species 402 0 1 34018 Rhodospirillum centenum 533 genus 0 Magnetospira 1182780 1 17 2 516 no rank 2685734 1 0 516 species 1288970 Magnetospira sp. QH-2 1 0 order 2013 0 6 2800060 2013 family 0 1 69657 Hyphomonadaceae 6 34 Hyphomonas 85 1 32 3 0 776 genus species 375 0 1 Hyphomonas neptunium 81032 0 1 2630699 no rank 369 Hyphomonas sp. Mor2 1906738 1 0 369 species genus 1203 2 15 1 2723 Hirschia 0 1188 species 0 2724 Hirschia baltica 1 no rank 11816 0 8 82117 537 genus 0 991903 Polymorphum 1 11 2 526 species 991904 Polymorphum gilvum 1 0 436 genus 1 Micavibrio 213485 7 2 0 0 Micavibrio aeruginosavorus 349221 1 429 species 574 genus 0 Phreatobacter 1632780 1 13 2 1 Phreatobacter sp. S-12 1868589 0 species 561 clade 10269 2 62654 0 10269 genus Candidatus Puniceispirillum 1 767891 36 2 0 10233 species 0 767892 Candidatus Puniceispirillum marinum 1 class 3164 12 5 Oligoflexia 1 1553900 0 1 213481 Bdellovibrionales 5 7 0 1229 order 1222 family 0 1 213483 Bdellovibrionaceae 8 4 genus 1214 0 3 4 Bdellovibrio 958 1 species 812 1 959 Bdellovibrio bacteriovorus 0 0 453816 Bdellovibrio exovorus 1 398 species 0 1 Bacteriovoracales 2024979 6 11 1930 order 1318 family 0 1 1652132 Halobacteriovoraceae 1 3 0 1 1652133 Halobacteriovorax 4 2 1317 genus 0 97084 Halobacteriovorax marinus 1 1313 species 601 family 0 263369 2 146784 1 Bacteriovorax 8 2 0 601 genus 593 species 0 960 Bacteriovorax stolpii 1 class 835 0 6 1807140 order 835 0 6 28 225057 1 Acidithiobacillales 20 5 225058 1 Acidithiobacillaceae 0 family 807 787 genus 0 1 Acidithiobacillus 119977 4 29 250 species 0 Acidithiobacillus ferrivorans 160808 1 0 Acidithiobacillus caldus 33059 1 280 species 0 Acidithiobacillus ferrooxidans 920 1 228 species 622 class 0 580370 5 0 Mariprofundales 1 580371 16 5 622 order 0 1 Mariprofundaceae 580372 4 2 606 family 3 2 1 377315 Mariprofundus 0 genus 604 0 Mariprofundus aestuarium 1921086 1 362 species species 240 0 1 Mariprofundus ferrinatatus 1921087 123 349 Betaproteobacteria 1 28216 0 class 139395 4724 order 0 1 206389 Rhodocyclales 22 57 822 family 0 75787 Rhodocyclaceae 1 6 20 genus 277 0 6 2 1 146937 Azospira 146939 Azospira oryzae 1 0 271 species 75788 1 0 230 no rank species 230 0 1 Rhodocyclaceae bacterium 1898103 295 genus 0 551759 1 Aromatoleum 2 2 551760 Aromatoleum aromaticum 1 0 293 species family 3564 0 12 70 Zoogloeaceae 1 2008794 5 29 Azoarcus 1 12960 0 genus 1718 2 2629479 0 no rank 999 species 614 1 Azoarcus sp. CIB 198107 0 385 species Azoarcus sp. KH32C 748247 1 0 Azoarcus olearius 418699 1 0 359 species 0 Azoarcus sp. SY39 2067960 1 331 species 42 6 33057 Thauera 1 0 genus 1776 0 2609274 2 827 no rank 0 1 Thauera sp. K11 2005884 species 407 species 420 0 1 85643 Thauera sp. MZ1T species 265 0 1 Thauera humireducens 1134435 324 species 96773 Thauera chlorobenzoica 1 0 0 1 59405 Thauera aromatica species 318 3 2 1 2008795 Azonexaceae 0 family 281 genus 279 2 2 Dechloromonas 1 73029 0 1 259537 Dechloromonas aromatica 0 species 277 12 119066 0 no rank 6508 genus 5043 0 38 6 Kinetoplastibacterium 33055 1 783 species Candidatus Kinetoplastibacterium galatii 994695 1 0 1 233181 Kinetoplastibacterium blastocrithidii 0 species 836 species 1043 1 994696 Candidatus Kinetoplastibacterium oncopeltii 0 species 1249 1 Candidatus Kinetoplastibacterium desouzaii 994692 0 species 1094 1 33056 Candidatus Kinetoplastibacterium crithidii 0 195 genus 0 1301080 1 Candidatus Nasuia deltocephalinicola 1160784 1 0 195 species 0 Candidatus Accumulibacter 327159 1 2 4 317 genus 0 Candidatus Accumulibacter phosphatis 327160 1 313 species 0 1 1381133 Candidatus Profftella 2 2 917 genus 0 Candidatus Profftella armatura 669502 1 915 species 1 189384 0 genus 36 Candidatus Tremblaya princeps 189385 1 0 36 species 0 33809 2 1075 no rank species 399 1 1904640 Betaproteobacteria bacterium GR16-43 0 species 676 1 beta proteobacterium CB 543913 0 0 1 Burkholderiales 80840 920 235 105589 order 20068 family Comamonadaceae 1 80864 59 176 0 1 2 Verminephrobacter 1 364316 0 genus 1581 0 Verminephrobacter eiseniae 364317 1 1580 species 1217 genus 283 Comamonas 1 4 3 0 species 565 0 1 Comamonas testosteroni 285 1 Comamonas serinivorans 1082851 0 species 374 species 275 1 225992 Comamonas kerstersii 0 genus 2635 9 52 Acidovorax 12916 1 0 species 243 0 1 Acidovorax ebreus 721785 0 2684926 4 1208 no rank 452 species 0 Acidovorax sp. T1 1858609 1 0 1 232721 Acidovorax sp. JS42 species 238 244 species 358220 Acidovorax sp. KKS102 1 0 0 Acidovorax sp. RAC01 1842533 1 274 species 0 Acidovorax sp. NA3 553814 1 212 species Acidovorax citrulli 80869 1 0 357 species 563 species 80867 Acidovorax avenae 1 0 220 genus 0 Candidatus Symbiobacter 1 1436289 1 2 species 219 1 1436290 Candidatus Symbiobacter mobilis 0 Alicycliphilus 1 201096 2 8 0 402 genus species 394 0 1 179636 Alicycliphilus denitrificans 3213 genus 0 1 Variovorax 34072 40 5 663243 2 0 982 no rank 0 1 Variovorax sp. PAMC 28711 1795631 species 417 1 Variovorax sp. PMC12 2126319 0 species 565 579 species 0 436515 Variovorax boronicumulans 1 species 1612 0 1 Variovorax paradoxus 34073 0 5 36 Delftia 80865 1 genus 2027 0 1 Delftia acidovorans 80866 species 437 468 species 180282 Delftia tsuruhatensis 1 0 no rank 1086 2 2613839 0 742013 Delftia sp. Cs1-4 1 0 647 species 1 Delftia sp. HK171 1920191 0 species 439 genus 279 1 2678886 0 0 Melaminivora sp. SC2-7 2116657 1 279 species 0 238749 Diaphorobacter 1 2 4 251 genus 0 1 1546149 Diaphorobacter polyhydroxybutyrativorans species 247 11 3 52972 1 Polaromonas 0 genus 2738 species 359 1 Polaromonas naphthalenivorans 216465 0 0 1 2638319 no rank 2368 Polaromonas sp. JS666 296591 1 0 2368 species 2 3 Ottowia 1 219181 0 genus 566 no rank 275 1 2645081 0 species 275 0 1 1658672 Ottowia sp. oral taxon 894 0 1 Ottowia sp. KADR8-3 2109914 species 289 0 Melaminivora 1649468 1 6 2 304 genus 298 no rank 2641902 1 0 Melaminivora sp. SC2-9 2109913 1 0 298 species 0 2 1 174951 1 Ramlibacter genus 714 713 species Ramlibacter tataouinensis 94132 1 0 0 4 3 665874 Limnohabitans 1 genus 585 2 2626134 0 no rank 581 1 1678129 Limnohabitans sp. 103DPR2 0 species 282 0 Limnohabitans sp. 63ED37-2 1678128 1 299 species 348 genus 0 Simplicispira 352450 1 2 4 Simplicispira sp. SC1-8 2109915 1 0 344 species 28065 1 Rhodoferax 5 16 0 1076 genus 0 81479 Rhodoferax antarcticus 1 289 species 0 Rhodoferax ferrireducens 192843 1 288 species species 186 1 1484693 Rhodoferax saidenbachensis 0 297 species 1842727 Rhodoferax koreense 1 0 2490452 2 0 613 genus 0 1458426 Comamonadaceae bacterium B1 1 347 species 1 1458425 Comamonadaceae bacterium A1 0 species 266 1123 genus Hydrogenophaga 47420 1 4 7 0 1 Hydrogenophaga crassostreae 1763535 0 species 395 2 2610897 0 no rank 721 0 Hydrogenophaga sp. RAC07 1842537 1 287 species 0 1 Hydrogenophaga sp. PBC 795665 species 434 1 119060 Burkholderiaceae 227 84 0 55190 family genus 2056 0 4 42 Polynucleobacter 1 44013 1 Polynucleobacter necessarius 576610 0 species 566 576611 Polynucleobacter asymbioticus 1 0 865 species species 583 0 1 Polynucleobacter duraquae 1835254 genus 5459 79 12 1822464 1 Paraburkholderia 0 0 1 36873 Paraburkholderia xenovorans species 469 377 species 2026199 Paraburkholderia aromaticivorans 1 0 no rank 647 0 1 2615204 1926494 Paraburkholderia sp. SOS3 1 0 647 species species 425 0 1 134537 Paraburkholderia fungorum 871 species 0 75105 Paraburkholderia caribensis 1 0 1 261302 Paraburkholderia phytofirmans species 497 371 species 0 Paraburkholderia phymatum 148447 1 948107 Paraburkholderia sprentiae 1 0 505 species species 464 0 1 Paraburkholderia hospita 169430 252970 Paraburkholderia phenoliruptrix 1 0 385 species 0 1 311230 Paraburkholderia terrae species 369 0 1 48736 Ralstonia 47 5 3568 genus 0 1 Ralstonia mannitolilytica 105219 species 491 656 species Ralstonia pickettii 329 1 0 374 species 0 Ralstonia insidiosa 190721 1 2000 species 0 305 Ralstonia solanacearum 1 0 1 1827195 genus 455 455 species 0 758793 Burkholderia sp. RPE64 1 298 genus 2571159 1 0 0 412963 Paraburkholderia rhizoxinica 1 298 species 5636 genus 0 106589 1 Cupriavidus 91 9 0 367825 Cupriavidus sp. USMAA1020 1 762 species 1 Cupriavidus gilardii 82541 0 species 398 0 119219 Cupriavidus metallidurans 1 736 species 1468 no rank 2640874 2 0 1 Cupriavidus sp. USMAA2-4 876364 0 species 749 1 1389192 Cupriavidus sp. USMAHM13 0 species 719 0 Cupriavidus pinatubonensis 248026 1 361 species 870 species 0 Cupriavidus basilensis 68895 1 species 950 1 106590 Cupriavidus necator 0 879 41 1 Burkholderia 32008 0 genus 33439 11 2613784 0 no rank 4279 species 552 0 1 Burkholderia sp. RPE67 758796 529 species Burkholderia sp. CCGE1003 640512 1 0 1 Burkholderia sp. Bp7605 1740163 0 species 301 species 397 1 1468409 Burkholderia sp. 2002721687 0 Burkholderia sp. Bp5365 1740162 1 0 398 species species 451 0 1 1097668 Burkholderia sp. YI23 0 1 Burkholderia sp. KJ006 416344 species 389 Burkholderia sp. CCGE1001 640510 1 0 445 species species 207 0 1 Burkholderia sp. PAMC 26561 1795043 239 species 0 1795874 Burkholderia sp. PAMC 28687 1 1678678 Burkholderia sp. HB1 1 0 371 species 986 species 0 337 Burkholderia glumae 1 19 87882 0 species group 15291 0 1 488731 Burkholderia seminalis species 429 432 species Burkholderia contaminans 488447 1 0 924 species Burkholderia vietnamiensis 60552 1 0 1805 species Burkholderia lata 482957 1 0 774 species Burkholderia stabilis 95485 1 0 0 488729 Burkholderia metallica 1 414 species 0 1 87883 Burkholderia multivorans species 967 species 404 0 1 Burkholderia pseudomultivorans 1207504 1 488732 Burkholderia diffusa 0 species 397 0 1 Burkholderia cenocepacia 95486 species 1993 species 283 1 1503055 Burkholderia territorii 0 60550 Burkholderia pyrrocinia 1 0 397 species 2275 species 0 Burkholderia cepacia 292 1 1 Burkholderia stagnalis 1503054 0 species 480 species 743 1 Burkholderia ambifaria 152480 0 265293 [Pseudomonas] mesoacidophila 1 0 432 species species 1433 1 101571 Burkholderia ubonensis 0 species 403 1 Burkholderia dolosa 152500 0 306 species 488446 Burkholderia latens 1 0 species 617 0 1 41899 Burkholderia plantarii 1 28095 Burkholderia gladioli 0 species 987 10400 species group 0 111527 7 species 750 0 1 Burkholderia oklahomensis 342113 0 1 Burkholderia sp. MSMB0852 1637841 species 698 0 1 13373 Burkholderia mallei species 2121 524 species 0 Burkholderia sp. MSMB617WGS 1637831 1 Burkholderia pseudomallei 28450 1 0 4525 species 527 species 0 Burkholderia sp. MSMB0266 1637837 1 species 1255 1 Burkholderia thailandensis 57975 0 0 93217 Pandoraea 1 10 41 4052 genus species 326 0 1 656178 Pandoraea vervacti 1 445709 Pandoraea thiooxydans 0 species 369 0 1 Pandoraea apista 93218 species 340 362 species 0 573737 Pandoraea oxalativorans 1 1 93222 Pandoraea sputorum 0 species 285 species 527 0 1 93220 Pandoraea pnomenusa 0 1 Pandoraea faecigallinarum 656179 species 312 0 1 93219 Pandoraea norimbergensis species 1092 Pandoraea pulmonicola 93221 1 0 398 species 0 75682 1 Oxalobacteraceae 28 64 10115 family genus 2239 0 6 32 Massilia 149698 1 no rank 792 0 2 2609279 370 species 1678028 Massilia sp. NR 4-1 1 0 0 1707785 Massilia sp. WG5 1 422 species 528 species 0 1141883 Massilia putida 1 Massilia sp. B2 2045208 1 0 400 species species 487 1 Massilia sp. ZMN-3 2072590 0 0 1 963 Herbaspirillum 35 6 2850 genus 1462 species 964 Herbaspirillum seropedicae 1 0 341045 Herbaspirillum hiltneri 1 0 338 species species 423 0 1 Herbaspirillum frisingense 92645 292 no rank 0 2624150 1 292 species 2025949 Herbaspirillum sp. meg3 1 0 0 80842 Herbaspirillum rubrisubalbicans 1 300 species 2622 genus Janthinobacterium 29580 1 50 7 0 species 507 0 1 Janthinobacterium svalbardensis 368607 374 species Janthinobacterium agaricidamnosum 55508 1 0 2610881 4 0 1691 no rank 294 species 0 Janthinobacterium sp. Marseille 375286 1 392 species 0 Janthinobacterium sp. LM6 1938606 1 469 species 0 1644131 Janthinobacterium sp. 1_2014MBL_MicDiv 1 0 1 1236179 Janthinobacterium sp. B9-8 species 536 346 genus 846 1 0 346 species 0 Oxalobacter formigenes 847 1 0 44 4 1 202907 Collimonas genus 1504 279113 Collimonas pratensis 1 0 422 species 587 species 0 279058 Collimonas arenae 1 0 1 158899 Collimonas fungivorans species 451 genus 490 0 3 12 1 Herminiimonas 303379 0 Herminiimonas arsenitoxidans 1809410 1 269 species Herminiimonas arsenicoxydans 204773 1 0 209 species 71 44 1 Alcaligenaceae 506 0 family 14401 0 1 305976 Pusillimonas 2 5 229 genus no rank 224 1 2640016 0 0 1 Pusillimonas sp. T7-7 1007105 species 224 1 Basilea 1472344 2 8 0 458 genus species 450 0 1 1472345 Basilea psittacipulmonis 300 genus 0 90243 Oligella 1 2 7 293 species 90245 Oligella urethralis 1 0 4021 genus Achromobacter 222 1 6 86 0 species 823 1 32002 Achromobacter denitrificans 0 0 1 217204 Achromobacter insolitus species 381 0 1 Achromobacter spanius 217203 species 658 0 85698 Achromobacter xylosoxidans 1 1666 species no rank 407 0 1 2626865 1758194 Achromobacter sp. AONIH1 1 0 407 species 5439 genus 0 1 Bordetella 517 17 136 species 249 1 1331258 Bordetella pseudohinzii 0 0 Bordetella petrii 94624 1 278 species 0 Bordetella flabilis 463014 1 242 species 334 species 0 Bordetella pertussis 520 1 1 Bordetella genomosp. 6 463024 0 species 373 0 519 Bordetella parapertussis 1 424 species 265 no rank 2630031 1 0 265 species 0 Bordetella sp. H567 1697043 1 1 518 Bordetella bronchiseptica 0 species 823 220 species 0 521 Bordetella avium 1 280 species 0 1416803 Bordetella genomosp. 9 1 35814 Bordetella holmesii 1 0 227 species 0 1 1416806 Bordetella genomosp. 8 species 377 380 species Bordetella genomosp. 13 463040 1 0 species 297 1 Bordetella bronchialis 463025 0 231 species Bordetella trematum 123899 1 0 0 1 Bordetella hinzii 103855 species 303 0 29574 1 Taylorella 3 7 1696 genus 817 species 84590 Taylorella asinigenitalis 1 0 872 species 0 29575 Taylorella equigenitalis 1 0 3 2 1 1100891 Paenalcaligenes genus 472 469 species 643674 Paenalcaligenes hominis 1 0 0 Orrella 1 1921582 2 2 299 genus species 297 0 1 Orrella dioscoreae 1851544 543 genus Advenella 290425 1 3 6 0 271 species 0 Advenella kashmirensis 310575 1 0 1 Advenella mimigardefordensis 302406 species 266 583 genus 0 1 507 Alcaligenes 4 2 511 Alcaligenes faecalis 1 0 579 species 0 1 Castellaniella 359336 2 7 290 genus 0 1 75697 Castellaniella defragrans species 283 no rank 4392 17 224471 0 Rhizobacter 1 212743 7 2 0 568 genus 0 Rhizobacter gummiphilus 946333 1 561 species 413882 [Polyangium] brachysporum 1 0 514 species 557 genus 0 1 93681 Roseateles 8 2 549 species 0 76731 Roseateles depolymerans 1 358 genus 0 1 Methylibium 316612 2 20 338 species Methylibium petroleiphilum 105560 1 0 genus 573 2 5 1 65047 Mitsuaria 0 no rank 568 0 1 2648776 Mitsuaria sp. 7 1658665 1 0 568 species Rubrivivax 1 28067 2 8 0 559 genus species 551 0 1 Rubrivivax gelatinosus 28068 Leptothrix 88 1 2 11 0 435 genus 0 34029 Leptothrix cholodnii 1 424 species 0 2 17 32012 1 Thiomonas genus 475 species 458 0 1 926 Thiomonas intermedia 0 Paucibacter 318147 1 2 10 353 genus 343 no rank 2642959 1 0 0 1 1768242 Paucibacter sp. KCTC 42545 species 343 503 no rank 0 80841 2 0 1 Burkholderiales bacterium YL45 1834205 species 325 1 1469502 Burkholderiales bacterium GJ-E10 0 species 178 8533 order 1 Neisseriales 206351 36 51 0 2690 family 1 Chromobacteriaceae 1499392 13 41 0 genus 294 0 2 2 168470 1 Laribacter 292 species Laribacter hongkongensis 168471 1 0 0 2 12 885864 1 Jeongeupia genus 323 1 2619593 0 no rank 311 311 species 0 Jeongeupia sp. USM3 1906741 1 genus 317 0 2 10 568394 1 Pseudogulbenkiania 307 no rank 0 2642558 1 0 Pseudogulbenkiania sp. NH8B 748280 1 307 species no rank 1421 4 90153 0 4 28 Chromobacterium 535 1 0 genus 1421 species 555 0 1 Chromobacterium vaccinii 1108595 0 1 536 Chromobacterium violaceum species 397 441 no rank 2641838 1 0 species 441 1 2059672 Chromobacterium sp. ATCC 53434 0 2 2 Aquaspirillum 1 187 0 genus 294 0 2620219 1 292 no rank 292 species Aquaspirillum sp. LM1 1938604 1 0 family 5792 0 22 55 Neisseriaceae 1 481 0 2 1 1 1193515 Snodgrassella genus 476 1196083 Snodgrassella alvi 1 0 475 species 975 no rank 421605 1 0 0 2052837 Neisseriaceae bacterium DSM 100970 1 975 species Neisseria 482 1 39 12 0 2904 genus 1 Neisseria mucosa 488 0 species 182 species 647 0 1 487 Neisseria meningitidis species 187 0 1 490 Neisseria sicca species 306 0 1 486 Neisseria lactamica species 144 1 Neisseria gonorrhoeae 485 0 0 1 Neisseria elongata 495 species 214 267 species 0 Neisseria zoodegmatis 326523 1 295 species 0 28091 Neisseria weaveri 1 1853278 Neisseria sp. 10023 1 0 181 species 0 2 2623750 no rank 442 species 228 0 1 1853276 Neisseria sp. 10022 214 species 0 Neisseria sp. KEM232 655307 1 71 Simonsiella 1 2 2 0 419 genus 0 Simonsiella muelleri 72 1 417 species 2 2 1 538 Eikenella 0 genus 183 0 539 Eikenella corrodens 1 181 species 0 2 59 genus 780 2627922 1 0 564 no rank species 564 0 1 96942 Vitreoscilla sp. C1 0 1 63 Vitreoscilla filiformis species 216 12843 order Nitrosomonadales 1 32003 41 95 0 249 family 2008790 2 0 249 genus Thiobacillus 1 919 2 6 0 243 species 36861 Thiobacillus denitrificans 1 0 0 5 13 1 Sterolibacteriaceae 2008793 family 641 Sulfuritalea 1 1054211 2 6 0 312 genus species 306 0 1 Sulfuritalea hydrogenivorans 748811 2 5 Methyloversatilis 378210 1 0 genus 316 311 no rank 2639971 1 0 311 species Methyloversatilis sp. RAC08 1842540 1 0 639 family 0 Gallionellaceae 1 90627 5 29 0 1 Sideroxydans 314343 7 2 272 genus 0 1 63745 Sideroxydans lithotrophicus species 265 2 2 96 Gallionella 1 0 genus 338 336 species Gallionella capsiferriformans 370405 1 0 669 family 0 2772226 3 338 genus 1778653 1 0 0 1 2637784 no rank 338 0 1 1985873 Sulfuriferula sp. AH1 species 338 0 5 2 1 Sulfuricella 935200 genus 331 Sulfuricella denitrificans 649841 1 0 326 species 0 15 12 Nitrosomonadaceae 1 206379 family 4105 1 Nitrosomonas 914 27 7 0 3505 genus Nitrosomonas eutropha 916 1 0 450 species 1 44574 Nitrosomonas communis 0 species 703 0 2 2609265 no rank 1309 682 species Nitrosomonas sp. AL212 153948 1 0 627 species 261292 Nitrosomonas sp. Is79A3 1 0 0 44577 Nitrosomonas ureae 1 618 species 0 1 Nitrosomonas europaea 915 species 398 585 genus 35798 1 Nitrosospira 4 12 0 167 species 0 35799 Nitrosospira briensis 1 Nitrosospira multiformis 1231 1 0 195 species 1288494 Nitrosospira lacus 1 0 211 species family 6445 0 32 13 Methylophilaceae 1 32011 genus 820 0 20 3 81682 1 Methylovorus 1 266009 Methylovorus glucosotrophus 0 species 400 400 no rank 0 2634027 1 400 species Methylovorus sp. MP688 887061 1 0 1822 genus 0 359407 Methylotenera 1 48 3 1 359408 Methylotenera mobilis 0 species 764 0 1055487 Methylotenera versatilis 1 1010 species genus 2878 3 31 1 1679002 Candidatus Methylopumilus 0 1974 species 0 Candidatus Methylopumilus planktonicus 1581557 1 species 873 1 1581680 Candidatus Methylopumilus turicensis 0 genus 341 1 404 0 341 species 0 405 Methylobacillus flagellatus 1 16 1 Methylophilus 12 2 0 552 genus 0 1 2630143 no rank 540 540 species 0 Methylophilus sp. TWE2 1662285 1 2138240 3 0 93 phylum 2138243 1 Coprothermobacteria 2 3 0 93 class 91 order 2138246 2 0 family 91 2 2138247 0 91 genus 1 Coprothermobacter 68335 2 6 0 Coprothermobacter proteolyticus 35786 1 0 85 species clade 304 0 5 2498710 phylum 304 0 5 67814 304 class Caldisericia 1 693071 5 5 0 0 1 Caldisericales 693072 4 1 299 order family 298 1 3 693073 Caldisericaceae 1 0 0 2 2 693074 Caldisericum 1 genus 297 0 693075 Caldisericum exile 1 295 species 74152 Elusimicrobia 1 9 1 0 1096 phylum no rank 329 0 1 99260 329 species 167965 uncultured Termite group 1 bacterium 1 0 class 236 3 641853 0 order 236 3 7 1 641854 Elusimicrobiales 0 2 1 1 Elusimicrobiaceae 641876 0 family 229 genus 228 1 423604 0 Elusimicrobium minutum 423605 1 0 228 species 530 class 0 447830 4 Endomicrobiales 1 1783344 4 3 0 530 order 0 1783343 3 527 family 0 1408194 Endomicrobium 1 1 3 527 genus 0 1408204 Candidatus Endomicrobium trichonymphae 1 308 species 218 species 0 Endomicrobium proavitum 1408281 1 17705 phylum 203691 58 0 class 17705 0 31 58 1 203692 Spirochaetia order 4120 7 14 Brachyspirales 1 1643686 0 0 6 7 1 143786 Brachyspiraceae family 4106 1 Brachyspira 29521 5 24 0 4099 genus 1211 species 0 52584 Brachyspira pilosicoli 1 Brachyspira intermedia 84377 1 0 927 species Brachyspira murdochii 84378 1 0 897 species 0 Brachyspira hyodysenteriae 159 1 1040 species order 10692 0 41 37 Spirochaetales 1 136 family 7231 0 17 26 1 1643685 Borreliaceae 8 171 Borreliella 1 64895 0 genus 3229 0 1 139 Borreliella burgdorferi species 495 species 368 0 1 62088 Borreliella valaisiana 0 1 Borrelia mayonii 1674146 species 356 664 species 0 Borreliella garinii 29519 1 species 432 1 Borreliella bissettii 64897 0 0 1 Borreliella bavariensis 664662 species 311 species 432 0 1 29518 Borreliella afzelii 3976 genus 0 1 Borrelia 138 8 82 370 species 141 Borrelia parkeri 1 0 47466 Borrelia miyamotoi 1 0 993 species Borrelia anserina 143 1 0 404 species 445 species Borrelia hermsii 140 1 0 474 species 0 Borrelia turicatae 142 1 44449 Borrelia recurrentis 1 0 606 species Borrelia duttonii 40834 1 0 602 species 3424 family 0 137 Spirochaetaceae 1 23 37 0 3 2 Spirochaeta 146 1 genus 473 species 237 1 154 Spirochaeta thermophila 0 1 46355 Spirochaeta africana 0 species 234 0 Sphaerochaeta 1 399320 8 4 383 genus 111 species 0 273376 Sphaerochaeta coccoides 1 Sphaerochaeta pleomorpha 1131707 1 0 124 species 0 1131703 Sphaerochaeta globosa 1 140 species 0 12 19 157 1 Treponema genus 1963 106 species Treponema paraluiscuniculi 53435 1 0 1 Treponema putidum 221027 0 species 279 0 1 2638727 no rank 106 species 106 1 1539298 Treponema sp. OMZ 838 0 0 1 150829 Treponema azotonutricium species 120 0 1 Treponema primitia 88058 species 161 species 220 0 1 Treponema caldarium 215591 0 1 Treponema pallidum 160 species 52 268 species Treponema pedis 409322 1 0 81028 Treponema brennaborense 1 0 143 species 217 species 0 Treponema denticola 158 1 0 167 Treponema succinifaciens 1 272 species 234 genus 1911556 1 0 species 234 0 1 Sediminispirochaeta smaragdinae 55206 1616789 1 Salinispira 2 6 0 334 genus species 328 0 1 1307761 Salinispira pacifica 0 1643688 9 2862 order 170 Leptospiraceae 1 9 5 0 2862 family 2683 genus 0 Leptospira 171 1 6 32 0 1 28452 Leptospira alstonii species 266 species 1035 0 1 Leptospira interrogans 173 0 1 28183 Leptospira santarosai species 345 species 386 0 1 174 Leptospira borgpetersenii 619 species 0 172 Leptospira biflexa 1 4 2 1 338321 Turneriella 0 genus 174 0 Turneriella parva 29510 1 170 species phylum 673 0 10 508458 2 10 1 Synergistia 649775 0 class 673 order 671 9 5 1 649776 Synergistales 0 8 2 649777 1 Synergistaceae 0 family 666 1 2 49894 Acetomicrobium 1 0 genus 83 0 Acetomicrobium mobile 97477 1 82 species 63 genus 0 81461 1 species 63 1 81462 Thermanaerovibrio acidaminovorans 0 0 1 81466 Aminobacterium 1 2 206 genus 205 species Aminobacterium colombiense 81468 1 0 336260 1 0 149 genus Thermovirga lienii 336261 1 0 149 species 163 genus 508459 1 0 0 Cloacibacillus porcorum 1197717 1 163 species 0 200930 10 2817 phylum class 2817 9 10 1 68337 Deferribacteres 0 1 191393 Deferribacterales 10 9 0 2808 order 2798 family 191394 1 Deferribacteraceae 8 6 0 2 3 Deferribacter 1 53572 0 genus 1466 Deferribacter desulfuricans 197162 1 0 1463 species 357 genus 0 2351 1 0 Flexistipes sinusarabici 2352 1 357 species 346 genus 0 1 117999 Denitrovibrio 4 2 species 342 0 1 Denitrovibrio acetiphilus 118000 genus 623 0 5 2 545865 1 Calditerrivibrio 0 1 Calditerrivibrio nitroreducens 477976 species 618 0 10 200940 phylum 2019 0 2 10 1 Thermodesulfobacteria 67799 class 2019 7 9 Thermodesulfobacteriales 1 188710 0 order 2017 family 2010 0 8 8 188711 1 Thermodesulfobacteriaceae genus 1372 0 3 5 1740 Thermodesulfobacterium 1 929 species 0 Thermodesulfobacterium geofontis 1295609 1 species 438 1 1741 Thermodesulfobacterium commune 0 355 genus 444090 1 Caldimicrobium 5 2 0 1 1653476 Caldimicrobium thiodismutans 0 species 350 275 genus 1 Thermodesulfatator 241192 2 2 0 0 Thermodesulfatator indicus 171695 1 273 species 9207 phylum 0 200918 43 9207 class 1 188708 Thermotogae 29 43 0 0 7 8 1643947 1 Petrotogales order 3121 0 6 1643949 family 3113 genus 485 1 28236 0 0 1 69499 Petrotoga mobilis species 485 0 5 2 1 1511648 Defluviitoga genus 701 0 Defluviitoga tunisiensis 1006576 1 696 species genus 1927 0 19 3 160798 1 Marinitoga no rank 958 0 1 2640159 species 958 0 1 Marinitoga sp. 1137 1545835 149715 Marinitoga piezophila 1 0 950 species order 563 2 7 1 Kosmotogales 1643946 0 6 6 Kosmotogaceae 1 1643948 0 family 561 genus 410 3 4 651456 1 Kosmotoga 0 1 Kosmotoga olearia 651457 0 species 198 0 1330330 Kosmotoga pacifica 1 208 species 0 1184396 1 Mesotoga 3 2 145 genus 0 1 Mesotoga prima 1184387 species 142 0 1 2419 Thermotogales 28 17 5494 order family 3474 10 10 1 Fervidobacteriaceae 1643950 0 1 2422 Fervidobacterium 4 1 0 1005 genus 0 Fervidobacterium nodosum 2424 1 401 species species 415 1 93466 Fervidobacterium pennivorans 0 188 species 0 2423 Fervidobacterium islandicum 1 genus 2459 0 16 5 Thermosipho 2420 1 Thermosipho melanesiensis 46541 1 0 648 species 782 species 0 Thermosipho africanus 2421 1 2676525 2 0 1013 no rank 505 species 0 Thermosipho sp. 1063 1462747 1 1 1437364 Thermosipho sp. 1070 0 species 508 1 188709 Thermotogaceae 11 17 0 2003 family 11 25 2335 Thermotoga 1 0 genus 986 0 Thermotoga petrophila 93929 1 51 species no rank 295 4 2631113 0 Thermotoga sp. RQ7 126738 1 0 60 species 73 species 1157947 Thermotoga sp. Cell2 1 0 species 90 1 126740 Thermotoga sp. RQ2 0 72 species 0 1157948 Thermotoga sp. 2812B 1 species 75 1 2337 Thermotoga neapolitana 0 species 78 0 1 Thermotoga naphthophila 93930 1 2336 Thermotoga maritima 0 species 118 286 species Thermotoga profunda 1508420 1 0 58 species Thermotoga caldifontis 1508419 1 0 5 21 1 1643951 Pseudothermotoga 0 genus 1006 0 Pseudothermotoga hypogea 57487 1 41 species 177758 Pseudothermotoga lettingae 1 0 311 species species 320 1 Pseudothermotoga elfii 38322 0 119394 Pseudothermotoga thermarum 1 0 313 species 0 23 32066 phylum 24582 0 1 203490 Fusobacteriia 37 23 24582 class order 24545 40 22 1 Fusobacteriales 203491 0 family 18744 0 11 18 1 Fusobacteriaceae 203492 0 1 167639 genus 699 1 167642 Ilyobacter polytropus 0 species 699 0 848 1 Fusobacterium 9 84 18027 genus 1 Fusobacterium hwasookii 1583098 0 species 2186 708 species 0 Fusobacterium gonidiaformans 849 1 0 1 861 Fusobacterium ulcerans species 1116 0 859 Fusobacterium necrophorum 1 449 species Fusobacterium varium 856 1 0 2443 species 0 1 Fusobacterium mortiferum 850 species 1011 species 6505 1 851 Fusobacterium nucleatum 0 0 Fusobacterium periodonticum 860 1 3525 species family 5761 0 6 10 1 Leptotrichiaceae 1129771 genus 1278 2 1 Streptobacillus 1 34104 0 1 34105 Streptobacillus moniliformis 0 species 1277 genus 640 0 1 168808 species 640 0 1 Sneathia amnii 187101 695 genus 32068 1 0 0 Sebaldella termitidis 826 1 695 species genus 3142 19 5 1 Leptotrichia 32067 0 792 species 40542 Leptotrichia buccalis 1 0 no rank 2331 3 2633022 0 712357 Leptotrichia sp. oral taxon 212 1 0 754 species species 810 1 1785996 Leptotrichia sp. oral taxon 847 0 Leptotrichia sp. oral taxon 498 712368 1 0 767 species 68297 6 0 1111 phylum 1 6 1 Dictyoglomia 203486 0 class 1111 0 5 5 1 203487 Dictyoglomales order 1110 14 4 203488 1 Dictyoglomaceae 0 family 1105 0 Dictyoglomus 1 13 1 3 1091 genus 0 Dictyoglomus thermophilum 14 1 533 species Dictyoglomus turgidum 513050 1 0 557 species 1 57723 Acidobacteria 1 21 0 1909 phylum 0 14 17 Acidobacteriia 1 204432 class 1687 1299 order Acidobacteriales 1 204433 12 23 0 family 1276 0 7 11 1 Acidobacteriaceae 204434 0 392733 1 Terriglobus 4 3 407 genus 0 1 Terriglobus roseus 392734 species 176 0 Terriglobus saanensis 870903 1 227 species 5 2 1 Acidobacterium 33973 0 genus 258 253 species Acidobacterium capsulatum 33075 1 0 2 5 1 658061 Candidatus Koribacter 0 genus 214 0 1 658062 Candidatus Koribacter versatilis species 209 390 genus Granulicella 940557 1 7 3 0 221 species 0 Granulicella tundricola 940615 1 species 162 0 1 940614 Granulicella mallensis 4 2 1 332160 Solibacterales 0 order 374 372 family 0 332161 Solibacteraceae 1 2 3 genus 370 0 7 2 1 332162 Candidatus Solibacter 0 1 332163 Candidatus Solibacter usitatus species 363 0 1562566 1 Blastocatellia 2 3 221 class Chloracidobacterium 458032 1 2 1 0 219 genus 1 458033 Chloracidobacterium thermophilum 0 species 218 phylum 238 4 200938 0 238 class 0 Chrysiogenetes 1 118001 4 2 order 236 0 3 189769 3 8 189770 1 Chrysiogenaceae 0 family 236 9 2 Desulfurispirillum 1 393029 0 genus 228 0 936456 Desulfurispirillum indicum 1 219 species