members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 45658 31 18918237 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4804 1 0 name 0 superkingdom 2157 0 286 72035 clade 1783276 0 44 1 1801631 phylum 0 44 1 1 44 genus 2490204 0 44 Candidatus Micrarchaeota archaeon Mia14 1 species 1920749 0 229 66570 Euryarchaeota phylum 28890 8 1 0 0 clade 2283794 42 10811 17 4887 Methanococci 1 0 class 19 183939 order 2182 4 1 0 4868 Methanococcales 16 5 3179 0 2183 family 1 301 155862 genus 0 1 Methanothermococcus okinawensis 301 155863 species 0 0 2184 genus 4 2878 2188 species 0 1 Methanococcus voltae 341 species 42879 0 1 480 Methanococcus aeolicus 1 1737 Methanococcus maripaludis 0 species 39152 2187 species 0 Methanococcus vannielii 320 1 10 1685 Methanocaldococcaceae 1 0 family 196117 2 0 1 1 196118 genus Methanocaldococcus 1373 7 0 species 2190 1 318 Methanocaldococcus jannaschii 67760 species 0 Methanocaldococcus infernus 100 1 0 1301915 species 1 Methanocaldococcus bathoardescens 181 0 no rank 2641196 1 151 151 Methanocaldococcus sp. FS406-22 1 0 species 644281 0 73913 species Methanocaldococcus vulcanius 210 1 412 Methanocaldococcus fervens 1 0 species 83171 genus 196119 9 1 0 2 310 Methanotorris 0 2189 species Methanotorris igneus 301 1 0 1 183925 1 class 25 Methanobacteria 5924 1 0 order 2158 2 24 5923 Methanobacteriales 237 1 0 2178 family 0 2179 genus 237 1 0 species 2180 237 Methanothermus fervidus 1 1 0 family 2159 3 22 5684 Methanobacteriaceae 7 Methanobrevibacter 3349 0 1 2172 7 genus 83816 species 0 Methanobrevibacter ruminantium 528 1 species 230361 0 1 466 Methanobrevibacter millerae 1 Methanobrevibacter olleyae 622 294671 species 0 0 no rank 2638681 910 2 1 Methanobrevibacter sp. AbM4 414 0 224719 species species 1609968 0 496 Methanobrevibacter sp. YE315 1 species 2173 0 816 Methanobrevibacter smithii 1 genus 2160 2 1 0 8 1559 Methanobacterium 1 133 Methanobacterium subterraneum 0 species 59277 Methanobacterium lacus 290 1 0 877455 species 868131 species 0 1 Methanobacterium paludis 264 0 species 2162 1 330 Methanobacterium formicicum 280 2 no rank 2627676 0 140 Methanobacterium sp. MZ-A1 1 species 1911685 0 0 species 1379702 140 Methanobacterium sp. MB1 1 118062 species 0 Methanobacterium congolense 260 1 318 1 0 genus 2316 species 2317 0 1 318 Methanosphaera stadtmanae 5 Methanothermobacter 455 145260 5 genus 0 1 1 Methanothermobacter wolfeii 156 145261 species 0 Methanothermobacter marburgensis 77 1 145263 species 0 1 Methanothermobacter thermautotrophicus 104 145262 species 0 2631116 no rank 0 1 113 Methanothermobacter sp. CaT2 113 1 866790 species 0 2283796 clade 0 4076 19 1 0 class 10 183967 3900 Thermoplasmata 17 6 2301 order 0 1 Thermoplasmatales 1898 10 0 1919231 no rank 1 969 0 1054217 species 1 Thermoplasmatales archaeon BRNA1 969 3 Thermoplasmataceae 213 0 1 1 46659 family 212 2 genus 2302 0 1 126 Thermoplasma acidophilum species 2303 0 species 50339 0 86 Thermoplasma volcanium 1 1747776 family 0 151 1 0 genus 1747777 1 151 0 species 1673428 1 151 Cuniculiplasma divulgatum 310 3 0 90142 family 3 310 Ferroplasma genus 74968 2 1 0 0 74969 species 1 Ferroplasma acidiphilum 91 0 97393 species 1 Ferroplasma acidarmanus 217 0 family 46630 1 249 0 genus 46631 1 249 0 species 82076 1 249 Picrophilus torridus 5 1161 0 1235850 order 1 0 family 2 1577788 619 Methanomassiliicoccaceae 3 390 1 0 1080709 genus Candidatus Methanomassiliicoccus intestinalis 390 1 1406512 species 0 0 genus 1607807 227 1 species 1577791 0 1 227 Candidatus Methanoplasma termitum 0 2517203 family 542 2 27 1291539 genus 0 1 2 Candidatus Methanomethylophilus 542 0 species 1291540 515 Candidatus Methanomethylophilus alvus 1 no rank 1234666 0 1 831 1495144 species 0 1 methanogenic archaeon ISO4-H5 831 2 176 0 1803510 clade 176 2 0 379546 genus 1 Aciduliprofundum boonei 91 0 379547 species 85 1 no rank 2633939 0 Aciduliprofundum sp. MAR08-339 85 1 673860 species 0 116 42147 0 clade 2290931 0 1 44 224756 class 50 Methanomicrobia 17966 order 42 94695 1 0 11565 Methanosarcinales 27 1 0 family 143067 12 4 1236 Methanosaetaceae 0 1 6 2222 genus Methanothrix 1224 3 0 species 301375 607 Methanosaeta harundinacea 1 2223 species 0 1 Methanothrix soehngenii 611 10287 Methanosarcinaceae 22 1 0 family 4 2206 2321 genus 0 269 1 0 2322 species Methanohalobium evestigatum 269 1 0 2220 genus 1 449 0 species 420950 1 449 Methanolobus psychrophilus 0 2175 genus 892 2 1 Methanohalophilus halophilus 363 2177 species 0 0 2176 species 1 Methanohalophilus mahii 529 0 genus 196136 1 226 226 Methanosalsum zhilinae 1 species 39669 0 0 1 2207 20 genus Methanosarcina 7239 13 1 1629 Methanosarcina barkeri 0 species 2208 species 2214 0 355 Methanosarcina acetivorans 1 0 2215 species Methanosarcina vacuolata 395 1 1 Methanosarcina horonobensis 636 0 418008 species 2209 species 0 1 Methanosarcina mazei 860 1 596 Methanosarcina siciliae 0 species 38027 1919 4 0 2644672 no rank Methanosarcina sp. Kolksee 546 1 0 1434099 species 1434102 species 0 Methanosarcina sp. WH1 362 1 0 species 1434103 1 458 Methanosarcina sp. WWM596 1434100 species 0 Methanosarcina sp. MTP4 553 1 1 Methanosarcina lacustris 397 0 170861 species 0 species 2210 1 432 Methanosarcina thermophila genus 2225 0 732 2 455 Methanococcoides burtonii 1 species 29291 0 1 277 Methanococcoides methylutens species 2226 0 476 1 101191 genus 0 Methanomethylovorans hollandica 476 1 0 101192 species 4 Methanocellales 1147 23 570264 order 0 1 0 family 570265 3 1124 3 Methanocella 1124 0 1 570266 2 genus Methanocella arvoryzae 771 1 1175445 species 0 1 Methanocella conradii 351 0 1175444 species 2191 60 order 0 1 18 Methanomicrobiales 5210 0 1 196137 2 family 2 Methanospirillaceae 215 2202 genus 0 1 213 1 Methanospirillum hungatei 213 2203 species 0 1 0 family 8 1198451 1584 Methanoregulaceae 6 3 Methanoregula 947 0 1 395331 8 genus 1 526 Methanoregula formicica species 882104 0 358766 species 0 Methanoregula boonei 413 1 1 0 genus 2 475087 629 Methanosphaerula 2 1 627 Methanosphaerula palustris species 475088 0 family 88404 0 899 2 0 1 2192 8 genus 2 Methanocorpusculum 899 891 Methanocorpusculum labreanum 1 species 83984 0 family 6 2194 1 0 2452 Methanomicrobiaceae 7 1 0 genus 230355 1 495 Methanolacinia 2 Methanolacinia petrolearia 494 1 54120 species 0 genus 19 45989 1 0 1951 Methanoculleus 4 species 2198 0 669 Methanoculleus marisnigri 1 no rank 2619537 0 1 552 86622 species 0 Methanoculleus sp. MAB1 552 1 83986 species 0 1 Methanoculleus bourgensis 711 66 24181 Halobacteria class 183963 151 1 0 Haloferacales 7068 18 130 1644055 order 0 1 family 7 1644056 1 0 3635 Haloferacaceae 8 4 Haloferax 2622 0 1 2251 95 genus Haloferax volcanii 921 1 2246 species 0 546 Haloferax mediterranei 1 0 species 2252 35746 species 0 1 Haloferax gibbonsii 1060 708 Halogeometricum 2 1 0 genus 1 60846 1 Halogeometricum borinquense 707 0 60847 species 1 298 0 293431 genus 0 293091 species 1 Haloquadratum walsbyi 298 1 504 2678336 no rank 0 species 756883 0 504 halophilic archaeon DL31 1 1 0 family 1963271 18 2799 Halorubraceae 8 3 Halorubrum 1343 56688 23 genus 0 1 species 2247 0 509 Halorubrum lacusprofundi 1 811 Halorubrum trapanicum 1 species 29284 0 Halopenitus 610 2 1209988 77 genus 0 1 1048396 species 0 Halopenitus persicus 533 1 7 1644057 genus 0 1 Salinigranum 828 2 755307 species 0 1 Salinigranum rubrum 821 27 Halobacteriales 9325 0 1 105 2235 order 2236 25 family 0 1 Halobacteriaceae 3033 10 0 1656823 genus 1 305 1 Halanaeroarchaeum sulfurireducens 305 0 1604004 species 1 0 genus 2 1980514 244 Halodesulfurarchaeum 2 1 242 Halodesulfurarchaeum formicicum species 1873524 0 0 1 71 2239 genus Halobacterium 1956 4 0 species 2242 447 Halobacterium salinarum 1 1 703 no rank 2668073 0 751944 species 0 Halobacterium sp. DL1 703 1 0 species 1407499 735 Halobacterium hubeiense 1 1 0 genus 332246 42 2 503 Halalkalicoccus 0 413810 species 1 Halalkalicoccus jeotgali 461 0 1 1963268 53 family Haloarculaceae 6187 16 0 1 4 63743 genus 3 Natronomonas 893 species 2257 0 1 455 Natronomonas pharaonis Natronomonas moolapensis 434 1 0 416273 species Halorhabdus 1173 3 14 146825 genus 0 1 Halorhabdus tiamatea 514 1 0 430914 species 1 645 Halorhabdus utahensis 0 species 146826 2 Halomicrobium 695 0 1 19 203135 genus 676 Halomicrobium mukohataei 1 species 57705 0 681 Halorientalis 2 1 0 genus 7 1073987 1 674 0 2648975 no rank 0 species 1932360 1 674 Halorientalis sp. IM1011 5 2692 Haloarcula genus 62 2237 1 0 0 51589 species Haloarcula hispanica 821 1 755 1 no rank 2624677 0 1 Haloarcula sp. CBA1115 755 0 1592728 species 1 481 Haloarcula taiwanensis species 1932004 0 2238 species 0 Haloarcula marismortui 573 1 7637 Natrialbales 20 order 74 1644060 1 0 1644061 59 family 0 1 Natrialbaceae 7563 19 1421 Natrinema 3 1 0 genus 88723 1 1 771 2622230 no rank 0 0 species 406552 1 771 Natrinema sp. J7-2 69525 species 0 1 Natrinema pellirubrum 649 501 1 63742 genus 0 0 13769 species Natrialba magadii 501 1 121871 18 genus 0 1 Haloterrigena 1375 3 Haloterrigena turkmenica 920 1 62320 species 0 1 437 Haloterrigena daqingensis species 588898 0 2 846 Halobiforma 1 0 genus 203193 2 1 844 Halobiforma lacisalsi 0 species 229731 0 1 13 353799 genus 2 Halostagnicola 646 species 353800 0 1 633 Halostagnicola larsenii 0 1 387342 2 genus Halopiger 1064 2 0 species 387343 1062 Halopiger xanaduensis 1 2 677 Natronococcus genus 5 29287 1 0 672 Natronococcus occultus 1 species 29288 0 1 371 0 genus 2256 1 371 Natronobacterium gregoryi species 44930 0 1 0 genus 1 1269201 2 603 Salinarchaeum 0 no rank 2621923 1 602 0 species 1333523 602 Salinarchaeum sp. Harcht-Bsk1 1 1 0 class 183968 9 7979 Thermococci 41 7970 Thermococcales 40 1 0 order 13 2258 family 2259 31 1 0 39 7957 Thermococcaceae 29 6625 Thermococcus 1 0 genus 77 2263 582419 species 0 Thermococcus paralvinellae 187 1 Thermococcus onnurineus 194 1 0 342948 species species 187880 0 180 Thermococcus radiotolerans 1 species 172049 0 1 222 Thermococcus sibiricus 54262 species 0 Thermococcus chitonophagus 185 1 0 species 2264 280 Thermococcus celer 1 1 Thermococcus barossii 291 54077 species 0 0 species 71997 1 362 Thermococcus gorgonarius 0 2265 species 1 Thermococcus litoralis 228 0 species 71998 138 Thermococcus pacificus 1 0 1505907 species Thermococcus eurythermalis 216 1 species 277988 0 215 Thermococcus thioreducens 1 1 242 Thermococcus nautili 0 species 195522 1 Thermococcus profundus 202 0 49899 species 1 Thermococcus piezophilus 143 0 1712654 species 1 266 Thermococcus peptonophilus 0 species 53952 311400 species 0 Thermococcus kodakarensis 273 1 Thermococcus siculi 181 1 72803 species 0 1 219 Thermococcus guaymasensis species 110164 0 species 55802 0 273 Thermococcus barophilus 1 163003 species 0 1 Thermococcus cleftensis 220 2627626 no rank 0 1527 6 0 246969 species Thermococcus sp. AM4 355 1 266 Thermococcus sp. EXT12c 1 species 2016361 0 1 176 Thermococcus sp. P6 species 122420 0 0 1042877 species 1 Thermococcus sp. 4557 376 species 1674923 0 142 Thermococcus sp. 2319x1 1 212 Thermococcus sp. 5-4 1 species 2008440 0 species 187878 0 304 Thermococcus gammatolerans 1 296 1 genus 83867 0 1 Palaeococcus pacificus 296 971279 species 0 8 1005 Pyrococcus genus 1 2260 1 0 2 240 no rank 2629106 0 Pyrococcus sp. ST04 157 1 1183377 species 0 Pyrococcus sp. NA2 83 1 0 342949 species 0 species 1008460 203 Pyrococcus yayanosii 1 1 126 Pyrococcus horikoshii 0 species 53953 0 species 1609559 108 Pyrococcus kukulkanii 1 species 2261 0 1 170 Pyrococcus furiosus 157 Pyrococcus abyssi 1 0 species 29292 1549 10 183980 class 0 0 order 2231 10 1549 1549 10 family 2232 0 genus 3 2233 1 0 5 815 Archaeoglobus species 1316941 0 1 252 Archaeoglobus sulfaticallidus 1 256 Archaeoglobus fulgidus 0 species 2234 0 species 84156 64 Archaeoglobus profundus 1 0 species 58290 1 240 Archaeoglobus veneficus 3 488 Geoglobus genus 2 190818 1 0 293 Geoglobus acetivorans 1 species 565033 0 Geoglobus ahangari 193 1 0 113653 species Ferroglobus 246 2 2 54260 genus 0 1 54261 species 0 1 Ferroglobus placidus 244 56 5421 1783275 clade 0 1 70 0 51967 phylum 70 1 genus 498845 0 Candidatus Korarchaeum cryptofilum 70 1 498846 species 0 28889 phylum 0 3718 43 Thermoprotei 3718 43 8 183924 class 0 1 1 0 order 114380 2 16 943 Desulfurococcales Pyrodictiaceae 362 5 0 1 2 2307 family 109 1 genus 54247 0 1 Hyperthermus butylicus 109 0 54248 species 59 1 0 54251 genus Pyrolobus fumarii 59 1 0 54252 species 2308 1 genus 0 1 Pyrodictium 192 2 191 Pyrodictium delaneyi 1 0 species 1273541 2272 family 0 579 10 1 0 genus 1 54258 3 112 Ignicoccus Ignicoccus islandicus 15 1 0 54259 species 0 species 160233 96 Ignicoccus hospitalis 1 2273 genus 0 128 2 0 2275 species 1 Desulfurococcus mucosus 17 0 species 94694 111 Desulfurococcus amylolyticus 1 1 0 genus 2279 1 3 165 Staphylothermus 84599 species 0 1 Staphylothermus hellenicus 89 0 species 2280 75 Staphylothermus marinus 1 477695 genus 0 1 112 112 Thermogladius calderae 1 0 species 1200300 1 62 0 54253 genus 62 Thermosphaera aggregans 1 0 species 54254 1473 9 0 2281 order family 2 118883 1 0 9 1473 Sulfolobaceae 185 1 0 69655 genus Sulfolobus tokodaii 185 1 111955 species 0 778 3 2284 genus 0 0 species 2285 1 218 Sulfolobus acidocaldarius 364 Sulfolobus islandicus 1 0 species 43080 0 no rank 2641160 196 1 196 Sulfolobus sp. A20 1 0 species 1891280 1 157 0 genus 2100760 157 Sulfolobus solfataricus 1 0 species 2287 genus 41980 0 2 160 species 1006005 0 88 Metallosphaera cuprina 1 Metallosphaera sedula 72 1 0 43687 species 0 12914 genus 191 1 Acidianus hospitalis 191 1 0 563177 species 5 Acidilobales 278 0 1 871006 1 order 2 119 0 family 871007 2 Acidilobus 119 0 1 1 105850 genus 0 242703 species 1 Acidilobus saccharovorans 118 0 family 255472 2 158 2 158 Caldisphaera genus 1 200414 1 0 0 species 200415 1 157 Caldisphaera lagunensis 0 order 2266 1016 12 2 2267 family 0 1 7 Thermoproteaceae 558 genus 2270 0 2 252 184117 species 0 1 Thermoproteus uzoniensis 137 2271 species 0 Thermoproteus tenax 115 1 164450 genus 0 204 2 0 species 164451 58 Vulcanisaeta distributa 1 Vulcanisaeta moutnovskia 146 1 985052 species 0 57 1 0 genus 2276 Pyrobaculum islandicum 57 1 0 2277 species 43 1 0 76886 genus Caldivirga maquilingensis 43 1 0 76887 species 114378 family 0 458 5 458 Thermofilum 5 genus 3 2268 1 0 119 Thermofilum carboxyditrophus 1 species 1483572 0 1550241 species 0 1 Thermofilum uzonense 62 Thermofilum adornatus 128 1 0 1365176 species 0 species 2269 1 146 Thermofilum pendens 651137 phylum 0 1633 12 0 order 31932 665 3 family 338190 0 665 3 135 1 0 1993653 genus Candidatus Nitrosomarinus catalina 135 1 1898749 species 0 0 genus 338191 530 2 1229909 species 0 1 Candidatus Nitrosopumilus sediminis 210 0 1580092 species 1 Candidatus Nitrosopumilus adriaticus 320 4 504 0 no rank 651142 1593364 genus 0 1 213 0 species 1410606 213 Candidatus Nitrosopelagicus brevis 1 3 Candidatus Nitrosotenuis 291 1825023 3 genus 0 1 118 Candidatus Nitrosotenuis cloacae 1 0 species 1603555 1 Candidatus Nitrosotenuis sp. AQ6f 170 1846278 species 0 5 Nitrososphaeria 464 2 1643678 class 0 1 0 order 1968909 1 86 0 family 1968910 86 1 86 1 genus 498374 0 2045011 species 0 Candidatus Nitrosocaldus islandicus 86 1 1033996 2 order 0 1 3 Nitrososphaerales 376 374 2 family 1033997 0 374 Nitrososphaera 2 1 0 genus 7 497726 1034015 species 0 Nitrososphaera viennensis 367 1 281 2 superkingdom 0 1 4486 Bacteria 18800544 0 1783270 clade 4581766 384 5 3750 65842 phylum 0 class 3 204430 1 0 5 3750 Fibrobacteria 4 Fibrobacterales 3747 0 1 4 218872 order 3 Fibrobacteraceae 3743 204431 2 family 0 1 genus 832 1 1 0 3741 Fibrobacter 2 0 833 species Fibrobacter succinogenes 3740 1 clade 68336 0 4570360 369 0 1134404 phylum 2603 7 1 0 class 12 795747 7 2603 Ignavibacteria 6 2591 Ignavibacteriales order 795748 18 1 0 Melioribacteraceae 1578 2 6 1334117 family 0 1 genus 1134403 0 1572 1 1134405 species 0 1 Melioribacter roseus 1572 1 0 family 795749 1 995 Ignavibacteriaceae 3 795750 1 genus 0 1 2 Ignavibacterium 994 591197 species 0 1 Ignavibacterium album 993 phylum 976 110 1 0 4548493 Bacteroidetes 340 0 1 768503 165 class Cytophagia 70355 60 0 1 768507 340 order Cytophagales 70190 59 5058 Cyclobacteriaceae 10 family 563798 11 1 0 2 1707 Echinicola genus 390846 2 1 0 1705 Echinicola vietnamensis 1 species 390884 0 genus 7 246875 1 0 837 Algoriphagus 2 species 1727163 0 1 830 Algoriphagus sp. M8-2 754 Belliella 2 1 0 genus 19 232244 232259 species 0 1 Belliella baltica 735 3 Cyclobacterium 1749 0 1 68288 15 genus 1 869 Cyclobacterium marinum species 104 0 0 species 320787 1 865 Cyclobacterium amurskyense 1 0 family 1 1853234 2481 Persicobacteraceae 3 2 Persicobacter 2480 59740 12 genus 0 1 0 2664020 no rank 1 2468 0 1085624 species 1 Persicobacter sp. JZB09 2468 0 family 2762301 834 2 834 Marivirga 2 genus 11 869806 1 0 1 Marivirga tractuosa 823 0 1006 species 1 0 family 3 1501348 546 Amoebophilaceae 3 1 369 0 281119 genus Candidatus Amoebophilus asiaticus 369 1 281120 species 0 0 273135 genus 1 174 1 174 no rank 2641185 0 249402 species 0 1 Cardinium endosymbiont of Encarsia pergandiella 174 1 0 family 200667 8 4 3985 Flammeovirgaceae 1808 1 0 no rank 340671 1257021 species 0 1 Flammeovirgaceae bacterium 311 1808 2 Flammeovirga 2169 2 59739 genus 0 1 1 2167 0 2637820 no rank 1 Flammeovirga sp. MY04 2167 1191459 species 0 0 1 1937968 18 family Bernardetiaceae 1165 3 2 Bernardetia 1147 0 1 1937972 5 genus 0 999 species Bernardetia litoralis 1142 1 0 1 1853232 172 family Hymenobacteraceae 37711 16 3 4344 Pontibacter 1 0 genus 34 323449 1 Pontibacter akesuensis 2409 0 388950 species 400092 species 0 Pontibacter korlensis 1901 1 8 27241 Hymenobacter genus 89966 239 1 0 1 Hymenobacter sedentarius 3851 1411621 species 0 0 no rank 2615202 19942 5 1 Hymenobacter sp. DG25A 2598 1385663 species 0 species 1385664 0 3145 Hymenobacter sp. DG25B 1 1 Hymenobacter sp. APR13 5129 0 1356852 species 0 1484118 species Hymenobacter sp. PAMC 26628 4943 1 4127 Hymenobacter sp. PAMC 26554 1 species 1484116 0 1 Hymenobacter swuensis 3209 0 1446467 species 1 0 genus 36 1379908 5954 Rufibacter 4 2639626 no rank 0 2 3745 1931 Rufibacter sp. DG31D 1 species 1379910 0 1 Rufibacter sp. DG15C 1814 1379909 species 0 1 2173 Rufibacter tibetensis 0 species 512763 17 18070 Cytophagaceae family 56 89373 1 0 Dyadobacter 2897 2 120831 8 genus 0 1 0 species 94254 1 2889 Dyadobacter fermentans genus 319458 1 1 0 2 1209 Leadbetterella 316068 species 0 1 Leadbetterella byssophila 1208 1957 Runella 2 1 0 genus 105 7 Runella slithyformis 1950 1 106 species 0 861914 3 genus 0 1 Fibrella 1731 2 no rank 2620963 0 1 1728 1728 Fibrella sp. ES10-3-2-2 1 0 species 1834519 genus 107 61 1 0 8883 Spirosoma 6 Spirosoma sp. HA7 1756 1 0 2057025 species species 1178516 0 1 2276 Spirosoma montaniterrae 0 species 564064 1 1697 Spirosoma rigui 1 Spirosoma radiotolerans 1397 0 1379870 species 1 1696 Spirosoma aerolatum 0 species 1211326 0 1 978 34 genus 2 Cytophaga 1337 1 Cytophaga hutchinsonii 1303 985 species 0 151 164613 Flavobacteriia class 117743 71 1 0 order 122 200644 1 0 150 164542 Flavobacteriales 12 39782 family 0 1 Blattabacteriaceae 1551 10 1539 Blattabacterium 9 genus 36 34098 1 0 no rank 2647581 0 1125 6 1 Blattabacterium sp. (Blattella germanica) 164 624186 species 0 246 Blattabacterium sp. (Nauphoeta cinerea) 1 0 species 1316444 272 Blattabacterium sp. (Mastotermes darwiniensis) 1 0 species 39768 0 367806 species Blattabacterium sp. (Blatta orientalis) 109 1 0 1186051 species Blattabacterium sp. (Blaberus giganteus) 141 1 1 193 Blattabacterium sp. (Periplaneta americana) species 367488 0 1653831 species 0 Blattabacterium cuenoti 158 1 164514 species 0 1 Blattabacterium punctulatus 220 1002 Crocinitomicaceae 3 1 0 family 1853230 14 Fluviicola 988 2 0 1 6 332102 genus species 191579 0 982 Fluviicola taffensis 1 1 1 Cryomorphaceae 0 family 246874 1216 2 family 1333713 0 1216 Owenweeksia 2 genus 267986 1 1 0 0 253245 species Owenweeksia hongkongensis 1215 1 family 49546 1419 1 0 106 111820 Flavobacteriaceae 216431 genus 0 1 598 species 313588 0 1 598 Croceibacter atlanticus 5 3419 Maribacter 1 0 genus 252356 5 no rank 2615042 0 3 2652 313603 species 0 1 Maribacter sp. HTCC2170 945 1836467 species 0 Maribacter sp. T28 774 1 1 Maribacter sp. 1_2014MBL_MicDiv 933 0 1644130 species species 1178778 0 762 Maribacter cobaltidurans 1 5 Myroides 3591 76831 92 genus 0 1 2642485 no rank 0 1533 2 794 Myroides sp. ZB35 1 0 species 1458492 1 Myroides sp. A21 739 0 1583100 species 1 Myroides odoratimimus 1258 0 76832 species 0 480520 species Myroides profundi 708 1 Lutibacter 613 2 2 358023 genus 0 1 0 1622118 species 1 Lutibacter profundi 611 genus 393005 6 1 0 959 Tamlana 2 2069432 species 0 Tamlana sp. UJ94 953 1 4617 Gramella 5 1 0 genus 292691 11 0 1486245 species Gramella flava 1261 1 411153 species 0 1 Gramella forsetii 1084 1 701 Gramella sp. LPB0144 species 1913577 0 1 Gramella sp. SH35 1560 2126553 species 0 0 1 43 143222 genus Salegentibacter 961 2 2633436 no rank 0 1 918 1 Salegentibacter sp. T436 918 1729720 species 0 3 1573 Winogradskyella 1 0 genus 1 286104 2615021 no rank 0 2 1572 0 species 754409 1 818 Winogradskyella sp. PG-2 1936080 species 0 Winogradskyella sp. J14-2 754 1 2 Siansivirga 623 0 1 1 1204360 genus 0 species 762954 622 Siansivirga zeaxanthinifaciens 1 1 0 genus 9 326319 4 1991 Dokdonia 1384 2 no rank 2615033 0 1 842 Dokdonia sp. 4H-3-7-5 species 983548 0 313590 species 0 Dokdonia sp. MED134 542 1 Dokdonia donghaensis 598 1 326320 species 0 83612 genus 0 1 670 57029 species 0 Psychroflexus torquis 670 1 45937 Capnocytophaga 15 1 0 genus 143 1016 0 1018 species Capnocytophaga ochracea 1201 1 1 1258 Capnocytophaga cynodegmi species 28189 0 0 species 327575 1 15187 Capnocytophaga leadbetteri no rank 2640652 0 6 19784 species 209053 0 1 1374 Capnocytophaga sp. ChDC OS43 1 Capnocytophaga sp. oral taxon 878 15032 0 1316596 species Capnocytophaga sp. oral taxon 323 1033 1 0 1705617 species 0 1316593 species Capnocytophaga sp. oral taxon 864 845 1 776 Capnocytophaga sp. H2931 1 species 1945657 0 1 Capnocytophaga sp. H4358 724 0 1945658 species 1378 Capnocytophaga gingivalis 1 species 1017 0 1 2823 Capnocytophaga sputigena species 1019 0 Capnocytophaga stomatis 1231 1 1848904 species 0 species 28188 0 1383 Capnocytophaga canimorsus 1 1 Capnocytophaga haemolytica 1549 0 45243 species 1532 Zobellia 2 1 0 genus 1 112040 species 63186 0 1531 Zobellia galactanivorans 1 61432 no rank 0 2 2031 1 Flavobacteriaceae bacterium 3519-10 1309 531844 species 0 1 722 Flavobacteriaceae bacterium UJ101 0 species 1150389 1 872 261827 genus 0 Algibacter alginicilyticus 872 1 0 1736674 species Nonlabens 2371 5 0 1 363408 14 genus 0 319236 species Nonlabens sediminis 546 1 0 328515 species Nonlabens dokdonensis 637 1 1174 2 0 2615035 no rank 0 species 2058134 610 Nonlabens sp. MB-3u-79 1 564 Nonlabens sp. MIC269 1 0 species 1476901 0 1209327 genus 1020 1 species 1803846 0 1 1020 Flavivirga eckloniae 0 1 104264 10 genus Cellulophaga 2668 4 1 Cellulophaga lytica 952 0 979 species 59600 species 0 1 Cellulophaga algicola 818 888 Cellulophaga baltica 1 0 species 76594 1 225842 genus 0 1 3 Formosa 693 no rank 2644710 0 2 692 species 1336795 0 402 Formosa sp. Hel3_A1_48 1 1 290 Formosa sp. Hel1_33_131 0 species 1336794 Tenacibaculum 3077 5 0 1 104267 48 genus 1 696 Tenacibaculum dicentrarchi 0 species 669041 0 107401 species 1 Tenacibaculum maritimum 452 1 Tenacibaculum todarodis 1016 1850252 species 0 0 584609 species 1 Tenacibaculum jejuense 865 0 1649495 genus 1046 1 no rank 2622645 0 1 1046 0 species 1936081 1 1046 Seonamhaeicola sp. S2-3 1110 1 genus 153265 0 1110 Aequorivita sublithincola 1 0 species 101385 Lacinutrix 2238 4 0 1 291183 2 genus 2 1487 no rank 2647285 0 1 Lacinutrix sp. Bg11-31 635 0 2057808 species Lacinutrix sp. 5H-3-7-4 852 1 983544 species 0 0 species 1486034 1 749 Lacinutrix venerupis 0 genus 1176327 1 737 2636237 no rank 0 1 737 0 2094025 species Aureitalea sp. RR4-38 737 1 1 0 genus 417127 1 2 1112 Zunongwangia species 398743 0 1 1111 Zunongwangia profunda 5070 Polaribacter 6 1 0 genus 52959 17 species 996801 0 1010 Polaribacter reichenbachii 1 1774273 species 0 Polaribacter vadi 1002 1 3 3041 0 196858 no rank 1 Polaribacter sp. ALD11 928 2058137 species 0 1 1037 Polaribacter sp. MED152 species 313598 0 1076 Polaribacter sp. BM10 1 0 species 1529069 29 237 genus 0 1 9 Flavobacterium 11441 1371 Flavobacterium commune 1 0 species 1306519 0 species 55197 1 651 Flavobacterium branchiophilum 1 Flavobacterium psychrophilum 886 0 96345 species 1492737 species 0 Flavobacterium gilvum 1434 1 species 1763534 0 918 Flavobacterium crassostreae 1 0 species 312277 948 Flavobacterium indicum 1 1 3525 Flavobacterium johnsoniae 0 species 986 0 species 996 1679 Flavobacterium columnare 1 3 1981 Muricauda 1 0 genus 29 111500 0 species 111501 956 Muricauda ruestringensis 1 species 516051 0 1 996 Muricauda lutaonensis 0 1 252306 10 genus Robiginitalea 1485 2 Robiginitalea biformata 1475 1 252307 species 0 genus 336276 0 1 468 0 no rank 2615019 1 468 468 Olleya sp. Bg11-27 1 0 species 2058135 1 979 genus 2700084 0 1 Lutibacter sp. LPB0138 979 0 1850246 species genus 1518147 0 986 1 0 species 1790137 1 986 Wenyingzhuangia fucanilytica 1 1076 genus 178469 0 Arenibacter algicola 1076 1 0 616991 species 1 0 genus 2 389486 856 Sediminicola 2 1 854 no rank 2648869 0 Sediminicola sp. YIK13 854 1 0 1453352 species 0 313602 no rank 636 3 471 Candidatus Sulcia 2 1 0 genus 10 336809 461 Candidatus Sulcia muelleri 1 species 336810 0 1940138 genus 0 165 1 1 Candidatus Walczuchella monophlebidarum 165 1415657 species 0 22 47932 0 2762318 family 76 308865 genus 0 1 Elizabethkingia 9584 6 1 Elizabethkingia genomosp. 4 1184 1756150 species 0 0 species 1756149 1 1265 Elizabethkingia genomosp. 3 1117645 species 0 1 Elizabethkingia anophelis 3657 0 238 species Elizabethkingia meningoseptica 1933 1 species 172045 0 1469 Elizabethkingia miricola 1 Riemerella 1841 2 21 34084 genus 0 1 1 1820 Riemerella anatipestifer 0 species 34085 0 1 13 1013 genus Weeksella 556 2 1 543 Weeksella virosa 0 species 1014 0 no rank 2782232 10 14988 1526 1 2782228 genus 0 1 Chryseobacterium taklimakanense 1526 0 536441 species 9 13462 Chryseobacterium genus 65 59732 1 0 1490 Chryseobacterium camelliae 1 species 1265445 0 1 Chryseobacterium gallinarum 1975 0 1324352 species 1 Chryseobacterium glaciei 1262 0 1685010 species 4877 3 2593645 no rank 0 1 1848 Chryseobacterium sp. T16E-39 species 2015076 0 1 1617 Chryseobacterium sp. StRB126 0 species 878220 0 species 1721091 1412 Chryseobacterium sp. IHB B 17019 1 species 558152 0 1 1199 Chryseobacterium piperi 0 species 253 1 2594 Chryseobacterium indologenes 2 20963 Ornithobacterium 1 0 genus 75 28250 species 28251 0 20888 Ornithobacterium rhinotracheale 1 2 262 0 1755828 family 1 0 genus 1755829 1 2 262 Ichthyobacterium Ichthyobacterium seriolicida 261 1 242600 species 0 23268 Sphingobacteriia 24 1 0 class 117747 35 order 200666 53 1 0 23233 Sphingobacteriales 23 84566 80 family 0 1 22 Sphingobacteriaceae 23180 no rank 84568 0 1431 1 0 1986952 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1431 1 Sphingobacterium 6579 6 0 1 28 28453 genus 0 no rank 2609468 4 5354 1 1176 Sphingobacterium sp. ML3W species 1538644 0 species 2003121 0 1 1305 Sphingobacterium sp. G1-14 1933220 species 0 1 Sphingobacterium sp. B29 1636 Sphingobacterium sp. 21 1237 1 0 743722 species Sphingobacterium mizutaii 1197 1 0 1010 species 1 0 genus 423349 56 4 4875 Mucilaginibacter 1 Mucilaginibacter sp. BJC16-A31 1229 0 1234841 species 1 Mucilaginibacter gotjawali 1946 1550579 species 0 1 1644 0 no rank 2617802 1300914 species 0 Mucilaginibacter sp. PAMC 26640 1644 1 Pedobacter 7246 6 81 84567 genus 0 1 Pedobacter heparinus 1508 1 984 species 0 1 1214 Pedobacter ginsengisoli 0 species 363852 1 Pedobacter steynii 1638 0 430522 species 0 species 188932 1 1368 Pedobacter cryoconitis no rank 2628915 0 1 1437 0 1727164 species Pedobacter sp. PACM 27299 1437 1 1404 Pseudopedobacter 2 1 0 genus 1649482 5 species 151895 0 1 1399 Pseudopedobacter saltans 2 Solitalea 1565 9 929509 genus 0 1 1556 Solitalea canadensis 1 species 995 0 0 1 1853228 19 class 16 Chitinophagia 14175 1853229 82 order 0 1 Chitinophagales 14156 15 14 14074 Chitinophagaceae 1 0 family 77 563835 2 1151 Flavisolibacter 1 0 genus 13 398041 0 species 1492898 1138 Flavisolibacter tropicus 1 1769012 genus 0 1 1241 1241 1 2636138 no rank 0 0 1850526 species Arachidicoccus sp. BS20 1241 1 genus 58 379899 1 0 3 3105 Niabella 1 Niabella soli 1615 0 446683 species 1 1432 Niabella ginsenosidivorans 0 species 1176587 0 1 649460 7 genus 2 Filimonas 1582 1575 Filimonas lacunae 1 0 species 477680 genus 79328 4 1 0 3 4671 Chitinophaga Chitinophaga pinensis 3179 1 79329 species 0 1 Chitinophagaceae bacterium 13 1488 2029983 species 0 Niastella 2247 2 354354 2 genus 0 1 1 Niastella koreensis 2245 354356 species 0 0 1 1100069 147 order Bacteroidetes Order II. Incertae sedis 10259 7 0 1 71 563843 family 6 Rhodothermaceae 10112 4449 Rhodothermus 2 1 0 genus 51 29548 1 Rhodothermus marinus 4398 0 29549 species 1956 Salinibacter 2 1 0 genus 146918 16 species 146919 0 1 1940 Salinibacter ruber 0 no rank 1196022 1 3636 1 Rhodothermaceae bacterium RA 3636 1779382 species 0 73 Bacteroidia 4262775 0 1 242 200643 class 12 Marinilabiliales 7945 1970189 14 order 0 1 2 1541 Marinifilaceae 1 0 family 1573805 7 1 1534 0 2060722 genus 1 1534 Marinifilaceae bacterium SPP2 0 species 1717717 3 1840 Marinilabiliaceae 1 0 family 10 558415 0 1 1 1193324 genus 2 Alkalitalea 1830 0 species 889453 1829 Alkalitalea saponilacus 1 3 1457 Salinivirgaceae family 10 1970190 1 0 Salinivirga 1447 2 2 1970191 genus 0 1 Salinivirga cyanobacteriivorans 1445 1 0 1307839 species 3 Prolixibacteraceae 3093 0 1 1471398 13 family 0 1 24 1471399 genus Draconibacterium 3080 2 species 1168034 0 3056 Draconibacterium orientale 1 60 Bacteroidales 4254588 171549 1515 order 0 1 185291 no rank 0 1 2618 2618 Bacteroidales bacterium CF 1 species 1400053 0 156610 2 1853231 family 0 Odoribacter 156610 2 7 283168 genus 0 1 1 Odoribacter splanchnicus 156603 0 28118 species family 53 815 1 0 1963559 Bacteroidaceae 11 10 Bacteroides 1963506 816 64723 genus 0 1 37016 Bacteroides heparinolyticus 1 0 species 28113 1 279489 Bacteroides thetaiotaomicron 0 species 818 Bacteroides cellulosilyticus 78576 1 0 246787 species 34613 Bacteroides zoogleoformans 1 species 28119 0 1 187271 Bacteroides ovatus species 28116 0 0 1796613 species 1 Bacteroides caecimuris 143688 142560 Bacteroides caccae 1 species 47678 0 943545 Bacteroides fragilis 1 0 species 817 0 290053 species Bacteroides helcogenes 52025 1 Rikenellaceae 284161 5 0 1 171550 55 family 2 3690 Mucinivorans genus 1611681 8 1 0 1433126 species 0 1 Mucinivorans hirudinis 3682 1 0 genus 239759 189 280416 Alistipes 2 species 214856 0 280227 Alistipes finegoldii 1 542231 Tannerellaceae 7 1 0 family 2005525 111 375288 220 genus 0 1 3 Parabacteroides 519942 0 823 species Parabacteroides distasonis 192351 1 1 327371 0 2649774 no rank 327371 Parabacteroides sp. CT06 1 0 species 2025876 Tannerella 22178 3 0 1 195950 54 genus no rank 2620507 0 1 9935 1 9935 Tannerella sp. oral taxon HOT-286 0 species 712710 species 28112 0 1 12189 Tannerella forsythia 1 0 family 2005519 28 134645 Barnesiellaceae 3 genus 74 397864 1 0 134617 Barnesiella 2 134543 Barnesiella viscericola 1 species 397865 0 14841 Porphyromonadaceae 4 family 54 171551 1 0 0 1 29 836 genus Porphyromonas 14787 3 1 Porphyromonas asaccharolytica 3507 0 28123 species 0 837 species Porphyromonas gingivalis 11251 1 0 no rank 333046 747081 5 8 511434 genus 0 1 Candidatus Azobacteroides 1549 2 0 511435 species Candidatus Azobacteroides pseudotrichonymphae 1541 1 genus 909656 0 3 745532 357276 species 0 1 Bacteroides dorei 142027 0 376805 species 1 Bacteroides salanitronis 80194 0 821 species 1 Bacteroides vulgatus 523311 1 0 family 2 2005523 4962 Paludibacteraceae 3 4960 Paludibacter 2 1 0 genus 17 346096 0 species 185300 1 4943 Paludibacter propionicigenes Dysgonamonadaceae 15015 7 0 1 1 2005520 family genus 1784836 5 1 0 3385 Fermentimonas 2 1 3380 Fermentimonas caenicola species 1562970 0 6061 Proteiniphilum 2 1 0 genus 49 294702 1 Proteiniphilum saccharofermentans 6012 0 1642647 species 0 1 307628 14 genus Petrimonas 5568 2 0 1642646 species 1 Petrimonas mucosa 5554 family 171552 53 1 0 387350 Prevotellaceae 11 Prevotella 387297 10 0 1 838 628 genus 43749 Prevotella ruminicola 1 0 species 839 1 33690 Prevotella fusca species 589436 0 species 28132 0 1 37059 Prevotella melaninogenica species 28131 0 1 159241 Prevotella intermedia 9649 1 no rank 2638335 0 1 Prevotella sp. oral taxon 299 9649 0 652716 species 0 species 52227 25093 Prevotella dentalis 1 76123 species 0 1 Prevotella enoeca 13736 36633 Prevotella jejuni 1 0 species 1177574 0 species 28129 27819 Prevotella denticola 1 8 Saprospiria 2938 0 1 21 1937959 class 7 2917 Saprospirales 1 0 order 1936988 3 family 1937961 4 1 0 3 2129 Haliscomenobacteraceae 2349 2 genus 0 1 Haliscomenobacter 2125 2 2350 species 0 Haliscomenobacter hydrossis 2123 1 Saprospiraceae 785 3 0 1 1 89374 family genus 2 1007 1 0 2 784 Saprospira 1008 species 0 1 Saprospira grandis 782 19264 22 phylum 1090 0 1 0 class 102 191410 19264 Chlorobia 22 order 191411 163 1 0 19162 Chlorobiales 21 family 191412 99 1 0 18999 Chlorobiaceae 20 no rank 274493 0 8 6825 Pelodictyon 2591 3 1099 18 genus 0 1 species 34090 0 1 872 Pelodictyon phaeoclathratiforme 0 species 1100 1 1701 Pelodictyon luteolum 1091 18 genus 0 1 5 Chlorobium 4234 species 337090 0 667 Chlorobium chlorochromatii 1 0 species 1092 1185 Chlorobium limicola 1 1 875 Chlorobium phaeovibrioides species 1094 0 1 Chlorobium phaeobacteroides 1489 1096 species 0 2 730 Chloroherpeton genus 9 100715 1 0 species 100716 0 721 Chloroherpeton thalassium 1 genus 1101 11 1 0 4663 Prosthecochloris 5 species 1102 0 965 Prosthecochloris aestuarii 1 2632826 no rank 0 3687 3 Prosthecochloris sp. HL-130-GSB 1161 1 0 1974213 species 1868325 species 0 1 Prosthecochloris sp. CIB 2401 673 281093 species 0 Prosthecochloris sp. GSB1 1853 1 6682 Chlorobaculum 4 genus 256319 73 1 0 Chlorobaculum tepidum 1567 1 1097 species 0 274537 species 0 Chlorobaculum limnaeum 2913 1 1 Chlorobaculum parvum 2129 274539 species 0 0 456828 phylum 2 860 860 Candidatus Cloacimonas 2 1 0 genus 456826 3 0 species 456827 1 857 Candidatus Cloacimonas acidaminovorans 6796 8 0 phylum 142182 Gemmatimonadetes 6796 8 41 219685 class 0 1 order 155 219686 1 0 6755 Gemmatimonadales 7 6 Gemmatimonadaceae 6600 45 219687 family 0 1 3 3488 Gemmatimonas 1 0 genus 173479 73 1585 Gemmatimonas phototrophica 1 0 species 1379270 0 species 173480 1 1830 Gemmatimonas aurantiaca Gemmatirosa 3067 2 1706036 8 genus 0 1 Gemmatirosa kalamazoonesis 3059 1 861299 species 0 13 Elusimicrobia 2468 0 1 1 74152 phylum 1349 Endomicrobia 6 class 447830 4 1 0 1 0 order 1 1783344 5 1345 Endomicrobiales 4 1344 Endomicrobiaceae family 5 1783343 1 0 1339 Endomicrobium 3 genus 8 1408194 1 0 Endomicrobium proavitum 758 1 0 1408281 species 573 Candidatus Endomicrobium trichonymphae 1 0 species 1408204 1 457 99260 no rank 0 1 457 uncultured Termite group 1 bacterium species 167965 0 661 Elusimicrobia 5 1 0 class 1 641853 1 0 order 1 641854 660 Elusimicrobiales 4 family 1 641876 1 0 3 659 Elusimicrobiaceae 2 423604 genus 0 1 2 Elusimicrobium 658 423605 species 0 1 Elusimicrobium minutum 656 5 1747 1930617 phylum 0 class 3 1962850 1 0 5 1747 Calditrichae Calditrichales 1744 4 1962852 17 order 0 1 1727 Calditrichaceae 3 1 0 family 8 1962854 0 1 187144 7 genus Caldithrix 1719 2 Caldithrix abyssi 1712 1 187145 species 0 9 3636 0 phylum 200930 9 Deferribacteres 3636 0 1 15 68337 class 3621 Deferribacterales 8 1 0 order 191393 33 7 3588 Deferribacteraceae 1 0 family 191394 47 1 117999 genus 0 1 2 Denitrovibrio 1213 species 118000 0 1212 Denitrovibrio acetiphilus 1 1 744 0 53572 genus 744 Deferribacter desulfuricans 1 species 197162 0 0 545865 genus 915 1 0 species 477976 1 915 Calditerrivibrio nitroreducens 3 2351 genus 0 1 Flexistipes 669 2 1 Flexistipes sinusarabici 666 0 2352 species 55182 58 203691 phylum 0 1 0 class 203692 125 55182 Spirochaetia 58 Spirochaetales 42595 42 0 1 908 136 order family 16 1643685 1 0 4192 Borreliaceae 17 0 1 19 138 genus 8 Borrelia 2034 1 282 Borrelia turicatae 0 species 142 0 47466 species Borrelia miyamotoi 496 1 species 140 0 202 Borrelia hermsii 1 1 284 Borrelia parkeri species 141 0 species 44449 0 1 196 Borrelia recurrentis 168 Borrelia duttonii 1 0 species 40834 143 species 0 Borrelia anserina 387 1 2142 Borreliella 8 genus 64895 47 1 0 Borreliella bissettii 147 1 64897 species 0 Borreliella garinii 444 1 0 29519 species 0 1674146 species 1 Borrelia mayonii 414 species 139 0 1 268 Borreliella burgdorferi 1 265 Borreliella valaisiana 0 species 62088 0 664662 species Borreliella bavariensis 201 1 0 29518 species 1 Borreliella afzelii 356 1 0 family 137 817 37495 Spirochaetaceae 24 5008 Sphaerochaeta 4 genus 399320 6 1 0 species 273376 0 1626 Sphaerochaeta coccoides 1 Sphaerochaeta globosa 2064 1 0 1131703 species Sphaerochaeta pleomorpha 1312 1 0 1131707 species Sediminispirochaeta 1162 2 1911556 4 genus 0 1 0 species 55206 1158 Sediminispirochaeta smaragdinae 1 Treponema 25276 12 0 1 829 157 genus species 221027 0 3338 Treponema putidum 1 1 Treponema azotonutricium 1876 0 150829 species 0 158 species 1 Treponema denticola 1907 0 167 species 1 Treponema succinifaciens 6238 0 2638727 no rank 1 3530 species 1539298 0 1 3530 Treponema sp. OMZ 838 0 160 species Treponema pallidum 169 1 1 Treponema pedis 1023 0 409322 species Treponema caldarium 1540 1 0 215591 species 1 1792 Treponema primitia 0 species 88058 0 species 53435 122 Treponema paraluiscuniculi 1 Treponema brennaborense 2912 1 0 81028 species Spirochaeta 3918 3 0 1 38 146 genus 0 species 46355 1 1780 Spirochaeta africana 0 species 154 2100 Spirochaeta thermophila 1 genus 2 1616789 1 0 2 1314 Salinispira 0 1307761 species Salinispira pacifica 1312 1 0 1643688 order 4424 8 family 9 170 1 0 8 4424 Leptospiraceae 3594 Leptospira 6 1 0 genus 13 171 1 Leptospira interrogans 1238 173 species 0 Leptospira borgpetersenii 847 1 174 species 0 491 Leptospira alstonii 1 species 28452 0 0 172 species Leptospira biflexa 479 1 526 Leptospira santarosai 1 species 28183 0 1 821 0 genus 338321 0 29510 species 1 Turneriella parva 821 order 32 1643686 1 0 8038 Brachyspirales 7 family 268 143786 1 0 6 8006 Brachyspiraceae 1 0 genus 320 29521 5 7738 Brachyspira 0 species 84378 1 1486 Brachyspira murdochii 159 species 0 1 Brachyspira hyodysenteriae 1745 species 52584 0 1 2713 Brachyspira pilosicoli Brachyspira intermedia 1474 1 84377 species 0 0 200938 phylum 5 2515 5 2515 Chrysiogenetes 1 0 class 32 118001 Chrysiogenales 2483 4 189769 25 order 0 1 Chrysiogenaceae 2458 3 0 1 189770 31 family Desulfurispirillum 2427 2 0 1 12 393029 genus 1 2415 Desulfurispirillum indicum species 936456 0 780 3 0 2323 no rank 780 3 0 clade 1783234 0 95818 phylum 240 1 240 1 no rank 1895827 0 0 2056494 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 240 1 0 clade 95901 2 540 0 2497643 class 540 2 540 2 0 2497644 order 2 540 0 family 2497645 0 1 85 1551504 genus Candidatus Babela 540 2 0 species 673862 1 455 Candidatus Babela massiliensis phylum 68297 0 6 1180 6 1180 Dictyoglomia class 203486 4 1 0 1 0 order 203487 18 5 1176 Dictyoglomales 1158 Dictyoglomaceae 4 family 3 203488 1 0 Dictyoglomus 1155 3 0 1 13 2 genus species 14 0 1 638 Dictyoglomus thermophilum 515 Dictyoglomus turgidum 1 species 513050 0 2 542 0 phylum 2138240 542 2 0 2138243 class 0 order 2138246 542 2 family 2138247 0 542 2 1 0 genus 1 68335 542 Coprothermobacter 2 species 35786 0 541 Coprothermobacter proteolyticus 1 0 508458 phylum 8786 11 class 649775 83 1 0 8786 Synergistia 11 1 0 order 649776 43 8703 Synergistales 10 0 1 649777 396 family Synergistaceae 8660 9 469 Acetomicrobium 2 genus 49894 1 1 0 species 97477 0 468 Acetomicrobium mobile 1 Thermanaerovibrio 1068 2 0 1 81461 9 genus 0 81462 species 1 Thermanaerovibrio acidaminovorans 1059 585 1 genus 81466 0 0 species 81468 585 Aminobacterium colombiense 1 1 591 0 336260 genus Thermovirga lienii 591 1 0 336261 species 5551 Cloacibacillus 2 genus 508459 19 1 0 species 1197717 0 1 5532 Cloacibacillus porcorum 200918 phylum 0 17152 44 44 Thermotogae 17152 188708 23 class 0 1 28 Thermotogales 11904 8 2419 order 0 1 17 7331 Thermotogaceae family 7 188709 1 0 genus 50 1643951 1 0 2209 Pseudothermotoga 5 491 Pseudothermotoga hypogea 1 species 57487 0 1 638 Pseudothermotoga lettingae species 177758 0 38322 species 0 Pseudothermotoga elfii 629 1 401 Pseudothermotoga thermarum 1 species 119394 0 0 1 2335 145 genus Thermotoga 5115 11 1 Thermotoga maritima 530 2336 species 0 4 1967 no rank 2631113 0 Thermotoga sp. 2812B 566 1 0 1157948 species 1 Thermotoga sp. Cell2 391 1157947 species 0 538 Thermotoga sp. RQ7 1 0 species 126738 1 472 Thermotoga sp. RQ2 species 126740 0 93929 species 0 1 Thermotoga petrophila 466 0 93930 species Thermotoga naphthophila 578 1 0 species 2337 538 Thermotoga neapolitana 1 Thermotoga caldifontis 460 1 0 1508419 species 431 Thermotoga profunda 1 species 1508420 0 1 0 family 21 1643950 4565 Fervidobacteriaceae 10 4 Fervidobacterium 1664 9 2422 genus 0 1 1 613 Fervidobacterium islandicum species 2423 0 1 671 Fervidobacterium pennivorans 0 species 93466 371 Fervidobacterium nodosum 1 species 2424 0 5 2880 Thermosipho genus 2420 4 1 0 0 species 2421 1 852 Thermosipho africanus 1509 2 0 2676525 no rank 1462747 species 0 Thermosipho sp. 1063 760 1 1 Thermosipho sp. 1070 749 0 1437364 species species 46541 0 1 515 Thermosipho melanesiensis 7 1638 Kosmotogales 1 0 order 1 1643946 6 Kosmotogaceae 1637 1643948 8 family 0 1 0 1 3 651456 genus 3 Kosmotoga 995 424 Kosmotoga olearia 1 0 species 651457 species 1330330 0 1 568 Kosmotoga pacifica 2 634 Mesotoga 1 0 genus 21 1184396 1 613 Mesotoga prima 0 species 1184387 8 3587 Petrotogales 1 0 order 1643947 2 family 1643949 0 3585 7 0 1 1511648 7 genus 2 Defluviitoga 664 0 species 1006576 657 Defluviitoga tunisiensis 1 2593 Marinitoga 3 genus 32 160798 1 0 1 1202 Marinitoga piezophila 0 species 149715 no rank 2640159 0 1 1359 0 species 1545835 1359 Marinitoga sp. 1137 1 Petrotoga 328 2 0 1 48 28236 genus 1 Petrotoga mobilis 280 0 69499 species 0 phylum 32066 23 29035 23 Fusobacteriia 29035 0 1 19 203490 class 22 29016 Fusobacteriales order 203491 44 1 0 43 203492 family 0 1 11 Fusobacteriaceae 20895 9 19199 Fusobacterium 1 0 genus 848 149 0 851 species Fusobacterium nucleatum 6032 1 860 species 0 1 Fusobacterium periodonticum 3536 850 species 0 1 Fusobacterium mortiferum 1525 856 species 0 1 Fusobacterium varium 2808 1 Fusobacterium hwasookii 1596 1583098 species 0 Fusobacterium ulcerans 1722 1 0 861 species 849 species 0 Fusobacterium gonidiaformans 989 1 species 859 0 842 Fusobacterium necrophorum 1 167639 genus 0 1 1653 1 1653 Ilyobacter polytropus 0 species 167642 8077 Leptotrichiaceae 10 1 0 family 18 1129771 0 genus 34104 807 1 Streptobacillus moniliformis 807 1 34105 species 0 32067 7 genus 0 1 5 Leptotrichia 4711 1 Leptotrichia buccalis 1098 40542 species 0 2633022 no rank 0 3606 3 1590 Leptotrichia sp. oral taxon 212 1 species 712357 0 953 Leptotrichia sp. oral taxon 847 1 0 species 1785996 species 712368 0 1063 Leptotrichia sp. oral taxon 498 1 1 947 168808 genus 0 0 187101 species 1 Sneathia amnii 947 32068 1 genus 0 1 Sebaldella 1594 2 Sebaldella termitidis 1593 1 826 species 0 clade 1783272 0 1733 11455981 0 1297 phylum 49158 36 Deinococci 49158 36 0 1 188787 372 class 17 Thermales 17931 68933 259 order 0 1 16 Thermaceae 17672 0 1 126 188786 family 2 Oceanithermus 2409 0 1 21 208447 genus species 187137 0 2388 Oceanithermus profundus 1 8 Thermus 10823 0 1 270 227 genus 1 Thermus parvatiensis 1190 0 456163 species species 56957 0 1 1323 Thermus oshimai 0 species 56956 1 901 Thermus brockianus 271 species 0 1 Thermus aquaticus 1874 1 Thermus thermophilus 2870 274 species 0 0 no rank 2619321 1 1146 0 1111069 species 1 Thermus sp. CCB_US3_UF1 1146 0 37636 species 1 Thermus scotoductus 1292 3 3038 Meiothermus 1 0 genus 65551 19 1740 Meiothermus ruber 1 species 277 0 52022 species 0 1 Meiothermus silvanus 1279 186191 10 genus 0 1 Marinithermus 1276 2 1 1266 Marinithermus hydrothermalis species 186192 0 3 1652 0 2762275 order 0 1 13 332247 family Trueperaceae 1652 3 genus 332248 7 1 0 1639 Truepera 2 1 Truepera radiovictrix 1632 0 332249 species Deinococcales 29203 15 0 1 118964 376 order family 183710 155 1 0 14 28827 Deinococcaceae 28672 Deinococcus 13 1 0 genus 1298 405 0 1768108 species 1 Deinococcus actinosclerus 2599 0 species 432329 1587 Deinococcus peraridilitoris 1 1 3472 Deinococcus swuensis species 1182571 0 0 310783 species 1 Deinococcus deserti 1656 1 2397 no rank 2623546 0 species 2080419 0 2397 Deinococcus sp. NW-56 1 Deinococcus geothermalis 2010 1 0 68909 species 1 Deinococcus proteolyticus 2504 0 55148 species 2159 Deinococcus maricopensis 1 species 309887 0 species 1182568 0 1 2040 Deinococcus puniceus 2272 Deinococcus soli Cha et al. 2016 1 species 1309411 0 3197 Deinococcus gobiensis 1 0 species 502394 1 Deinococcus radiodurans 2374 0 1299 species 461 1239 phylum 0 1 728 Firmicutes 10054469 1 0 class 141 909932 192293 Negativicutes 31 0 1 909929 130 order Selenomonadales 96789 14 family 1843490 17 1 0 4 4867 Sporomusaceae Pelosinus 4850 3 0 1 110 365348 genus 0 365349 species Pelosinus fermentans 2598 1 1 2142 0 no rank 2629460 0 484770 species 1 Pelosinus sp. UFO1 2142 91792 Selenomonadaceae 9 1 0 family 1843491 271 0 1 158846 5 genus 2 Megamonas 53904 species 158847 0 53899 Megamonas hypermegale 1 6 Selenomonas 37617 0 1 317 970 genus Selenomonas ruminantium 10012 1 0 971 species 2637378 no rank 0 3 18481 7058 Selenomonas sp. oral taxon 136 1 0 species 713030 Selenomonas sp. oral taxon 478 5957 1 712538 species 0 0 1884263 species 1 Selenomonas sp. oral taxon 920 5466 69823 species 0 Selenomonas sputigena 8807 1 order 1843488 84 1 0 28802 Acidaminococcales 5 0 1 71 909930 family Acidaminococcaceae 28718 4 0 1 904 100 genus Acidaminococcus 28647 3 0 905 species 1 Acidaminococcus fermentans 12540 1 Acidaminococcus intestini 16007 0 187327 species 0 1 1843489 2392 order Veillonellales 66561 11 10 64169 Veillonellaceae 1 0 family 1969 31977 Veillonella 11147 3 0 1 28 29465 genus species 248315 0 1 4181 Veillonella rodentium 0 species 29466 6938 Veillonella parvula 1 0 1 906 848 genus 2 Megasphaera 21162 907 species 0 1 Megasphaera elsdenii 20314 7394 Negativicoccus 2 1 0 genus 21 909928 Negativicoccus massiliensis 7373 1 0 1702287 species 2 22497 Dialister 1 0 genus 56 39948 0 39950 species 1 Dialister pneumosintes 22441 1 0 class 91061 436 894764 Bacilli 434 0 1 1385 1169 order 267 Bacillales 395357 Bacillaceae 167703 119 529 186817 family 0 1 7 6360 Virgibacillus 1 0 genus 40 84406 1 1267 Virgibacillus pantothenticus 0 species 1473 2620237 no rank 0 2 1859 0 species 1911587 1 1143 Virgibacillus sp. 6R 0 species 403957 1 716 Virgibacillus sp. SK37 1 1087 Virgibacillus halodenitrificans species 1482 0 1 Virgibacillus necropolis 1129 163877 species 0 1 Virgibacillus phasianinus 978 2017483 species 0 3054 2 2675230 genus 0 Bacillus oceanisediminis 1766 1 0 665099 species 0 species 859143 1288 Bacillus kochii 1 2308 Halobacillus 3 1 0 genus 45667 1 0 species 1570 1084 Halobacillus halophilus 1 0 402384 species Halobacillus mangrovi 1223 1 5 6803 0 genus 2675234 1432 Bacillus lehensis 1 species 300825 0 1 Bacillus pseudofirmus 1101 0 79885 species 1 2251 Bacillus clausii 0 species 79880 199441 species 0 Bacillus krulwichiae 1104 1 86665 species 0 Bacillus halodurans 915 1 1 0 genus 1 1906945 1530 Parageobacillus 2 0 species 1426 1529 Parageobacillus thermoglucosidasius 1 2212 1 29331 genus 0 species 1449 0 1 2212 Amphibacillus xylanus 0 1 351195 3 genus 2 Salimicrobium 1237 1234 Salimicrobium jeotgali 1 0 species 1230341 Terribacillus 1383 2 4 459532 genus 0 1 1 Terribacillus aidingensis 1379 586416 species 0 Lysinibacillus 6798 5 39 400634 genus 0 1 0 1421 species 1 Lysinibacillus sphaericus 3098 species 28031 0 1 1052 Lysinibacillus fusiformis 1373 Lysinibacillus varians 1 0 species 1145276 1236 1 0 no rank 2636778 1 1236 Lysinibacillus sp. YS11 0 species 2072025 103829 Bacillus 58 1 0 genus 6465 1386 0 33932 species 1 Bacillus cohnii 977 1040 Bacillus cellulosilyticus 1 0 species 1413 1 1260 Bacillus flexus 0 species 86664 1498 Bacillus horikoshii 1 species 79883 0 Bacillus safensis 2081 1 0 561879 species 27147 10 0 86661 species group 1 Bacillus cereus 8425 0 1396 species 1439 Bacillus cytotoxicus 1 species 580165 0 1428 species 0 1 Bacillus thuringiensis 8087 0 species 658666 1 850 Bacillus bombysepticus 1405 species 0 1 Bacillus mycoides 3236 Bacillus anthracis 797 1 0 1392 species 2750818 no rank 0 3490 3 0 2053832 species 1 Bacillus sp. HBCD-sjtu 1394 0 1839798 species 1 Bacillus sp. FDAARGOS_235 1298 Bacillus sp. ABP14 798 1 1892404 species 0 Bacillus toyonensis 823 1 0 155322 species 0 632773 species Bacillus beveridgei 1339 1 0 79881 species Bacillus gibsonii 316 1 1 1088 1792192 species group 0 1 1088 Bacillus altitudinis species 293387 0 0 species 135735 1 1549 Bacillus endophyticus 0 1664069 species 1 Bacillus glycinifermentans 2271 1 2246 Bacillus infantis species 324767 0 0 species 1479 897 Bacillus smithii 1 1398 species 0 Bacillus coagulans 3561 1 1 Bacillus weihaiensis 1108 0 1547283 species Bacillus methanolicus 1469 1 1471 species 0 1178537 species 0 Bacillus xiamenensis 1089 1 species 412384 0 1 1474 Bacillus aryabhattai 1408 species 0 Bacillus pumilus 4603 1 19 15210 no rank 185979 0 1 Bacillus sp. WP8 1027 0 756828 species 1488 Bacillus sp. IHB B 7164 1 0 species 1827146 species 1774743 0 1 1012 Bacillus sp. SDLI1 1 Bacillus sp. 275 515 1941347 species 0 0 species 98228 1290 Bacillus sp. OxB-1 1 Bacillus sp. H15-1 1067 1 0 1856406 species Bacillus sp. Lzh-5 214 1 2049935 species 0 1 Bacillus sp. 1s-1 1065 2026248 species 0 Bacillus sp. Pc3 623 1 0 1446792 species Bacillus sp. X1(2014) 1215 1 0 1565991 species 499 Bacillus sp. MD-5 1 0 species 2009331 species 666686 0 1421 Bacillus sp. 1NLA3E 1 1 Bacillus sp. YP1 307 0 1574141 species 0 1837130 species Bacillus sp. FJAT-14266 994 1 1 Bacillus sp. BH072 394 1570330 species 0 1 689 Bacillus sp. JS species 1127744 0 Bacillus sp. LM 4-2 319 1 1628753 species 0 1409 species 0 Bacillus sp. (in: Bacteria) 400 1 species 563169 0 671 Bacillus sp. SJ-10 1 species 1404 0 1 3601 Bacillus megaterium 0 species group 653685 9 21540 1938374 species subgroup 0 3 7312 1 Bacillus siamensis 988 0 659243 species Bacillus amyloliquefaciens 3550 1 1390 species 0 492670 species 0 1 Bacillus velezensis 2774 1 Bacillus vallismortis 262 72361 species 0 0 species 1452 1368 Bacillus atrophaeus 1 1697 Bacillus paralicheniformis 1 species 1648923 0 1423 species 0 1 Bacillus subtilis 7525 1 Bacillus sonorensis 1758 119858 species 0 Bacillus licheniformis 1618 1 0 1402 species Geobacillus 14578 15 1154 129337 genus 0 1 0 33940 species Geobacillus thermodenitrificans 1249 1 1 1069 Geobacillus genomosp. 3 0 species 1921421 1198 Geobacillus subterraneus 1 0 species 129338 species group 1505648 0 4151 4 169283 species 0 Geobacillus lituanicus 837 1 species 1462 0 1 495 Geobacillus kaustophilus 1 1915 Geobacillus thermoleovorans species 33941 0 904 Geobacillus thermocatenulatus 1 species 33938 0 1422 species 0 Geobacillus stearothermophilus 1420 1 4337 6 no rank 2642459 0 Geobacillus sp. Y4.1MC1 1176 1 0 581103 species 1 Geobacillus sp. GHH01 604 1233873 species 0 691437 species 0 1 Geobacillus sp. C56-T3 668 0 species 544556 1 528 Geobacillus sp. Y412MC61 Geobacillus sp. WCH70 836 1 0 471223 species 1 525 Geobacillus sp. Y412MC52 species 550542 0 30 1329200 genus 0 1 3 Fictibacillus 2974 species 255247 0 1325 Fictibacillus arsenicus 1 1 Fictibacillus phosphorivorans 1619 1221500 species 0 genus 1055323 0 1416 1 33936 species 0 1 Aeribacillus pallidus 1416 3386 2 genus 2675229 0 1335 Bacillus muralis 1 0 species 264697 species 1478 0 1 2051 Bacillus simplex genus 1 182709 1 0 1757 Oceanobacillus 2 1 Oceanobacillus iheyensis 1756 0 182710 species 6 Anoxybacillus 6569 0 1 150247 108 genus 0 no rank 2639704 2 2547 0 1490052 species Anoxybacillus sp. B2M1 1255 1 1292 Anoxybacillus sp. B7M1 1 0 species 1490057 0 species 198467 1 1012 Anoxybacillus gonensis 0 33934 species Anoxybacillus flavithermus 2037 1 865 Anoxybacillus amylolyticus 1 0 species 294699 0 1 175304 1 genus 2 Lentibacillus 980 Lentibacillus amyloliquefaciens 979 1 0 1472767 species 4 2311 Thermoactinomycetaceae 1 0 family 186824 20 2 Novibacillus 2171 61 1677050 genus 0 1 0 1471761 species 1 Novibacillus thermophilus 2110 120 Laceyella 1 genus 292635 0 1 0 family 26 186820 9 9386 Listeriaceae 6 8246 Listeria 1 0 genus 1637 102 Listeria welshimeri 1014 1 0 1643 species 0 1638 species 1 Listeria ivanovii 1859 1640 species 0 1 Listeria seeligeri 1299 876 Listeria innocua 1 species 1642 0 Listeria monocytogenes 3096 1 0 1639 species 0 1 2755 2 genus Brochothrix 1114 2 2756 species 0 Brochothrix thermosphacta 1112 1 25958 Planococcaceae 26 1 0 family 89 186818 1 0 genus 1649 2 1009 Kurthia 2 1 1007 no rank 2644826 0 Kurthia sp. 11kri321 1007 1 0 1750719 species 6 648802 genus 0 1 2 Rummeliibacillus 1013 241244 species 0 Rummeliibacillus stabekisii 1007 1 0 1 9 648800 genus 3 Solibacillus 3027 1 2000 Solibacillus silvestris 0 species 76853 1018 1 2637870 no rank 0 1 Solibacillus sp. R5-41 1018 0 2048654 species 1 0 genus 1372 137 12 11751 Planococcus 1598147 species 0 Planococcus faecalis 704 1 200991 species 0 Planococcus rifietoensis 1238 1 414778 species 0 1 Planococcus donghaensis 737 2285 2 2662419 no rank 0 1272 Planococcus sp. MB-3u-03 1 0 species 2058136 0 species 1526927 1013 Planococcus sp. PAMC 21323 1 0 1302659 species Planococcus sp. L10.15 714 1 1 978 Planococcus plakortidis species 1038856 0 708 Planococcus kocurii 1 0 species 1374 1 2796 Planococcus maritimus 0 species 192421 1 615 Planococcus halocryophilus species 1215089 0 0 161360 species Planococcus antarcticus 839 1 0 genus 157226 1 2229 species 1508404 0 2229 Jeotgalibacillus malaysiensis 1 5 Sporosarcina 6840 0 1 23 1569 genus 3053 2 0 no rank 2647733 1930546 species 0 Sporosarcina sp. P37 1499 1 Sporosarcina sp. P33 1554 1 0 1930764 species 0 1571 species 1 Sporosarcina ureae 2789 1476 species 0 1 Sporosarcina psychrophila 975 0 no rank 539002 9 5980 7 4210 no rank 539742 0 4210 Exiguobacterium 7 genus 33986 94 1 0 Exiguobacterium antarcticum 760 1 0 132920 species 2535 4 0 no rank 2644629 species 1849031 0 1 809 Exiguobacterium sp. U13-1 species 1399115 0 539 Exiguobacterium sp. MH3 1 1224749 species 0 1 Exiguobacterium sp. ZWU0009 528 Exiguobacterium sp. AT1b 659 1 360911 species 0 821 Exiguobacterium sibiricum 1 0 species 332410 0 no rank 539738 1770 2 1770 Gemella 2 1 0 genus 1 1378 0 2624949 no rank 1 1769 0 1785995 species Gemella sp. oral taxon 928 1769 1 Paenibacillaceae 124798 46 0 1 347 186822 family 44249 977 genus 0 1 36 Paenibacillus 110016 0 189426 species Paenibacillus odorifer 1844 1 162209 species 0 Paenibacillus naphthalenovorans 2277 1 160799 species 0 Paenibacillus borealis 4393 1 Paenibacillus durus 5326 1 0 44251 species 1 Paenibacillus kribbensis 2092 0 172713 species 1870820 species 0 1 Paenibacillus ihbetae 3829 1126833 species 0 Paenibacillus beijingensis 2763 1 5519 Paenibacillus mucilaginosus 1 0 species 61624 0 species 1406 5967 Paenibacillus polymyxa 1 1 Paenibacillus larvae 1985 0 1464 species 1 Paenibacillus xylanexedens 2320 528191 species 0 Paenibacillus bovis 3073 1 1616788 species 0 0 169760 species Paenibacillus stellifer 4696 1 2044880 species group 0 3824 1 1 Paenibacillus riograndensis 3824 483937 species 0 365617 species 0 Paenibacillus sabinae 3152 1 1943 Paenibacillus swuensis 1 0 species 1178515 1 Paenibacillus terrae 1909 159743 species 0 1594 Paenibacillus peoriae 1 0 species 59893 38836 13 0 no rank 185978 1 Paenibacillus sp. IHBB 10380 1491 1566358 species 0 1 4107 Paenibacillus sp. FSL P4-0081 species 1536769 0 1 Paenibacillus sp. JDR-2 2804 0 324057 species 2069255 species 0 Paenibacillus sp. lzh-N1 1827 1 1695218 species 0 Paenibacillus sp. 32O-W 3332 1 0 1536772 species Paenibacillus sp. FSL R7-0273 4377 1 Paenibacillus sp. FSL R5-0345 1900 1 1536770 species 0 1 3085 Paenibacillus sp. Y412MC10 0 species 481743 0 species 1536773 1 4158 Paenibacillus sp. FSL R7-0331 Paenibacillus sp. FSL H7-0737 1636 1 0 1536775 species 1 Paenibacillus sp. BIHB4019 2306 0 1870819 species species 1536771 0 1 4118 Paenibacillus sp. FSL R5-0912 0 1536774 species 1 Paenibacillus sp. FSL H7-0357 3695 1 3211 Paenibacillus yonginensis species 1462996 0 0 species 189425 1 3310 Paenibacillus graminis 952 Paenibacillus crassostreae 1 0 species 1763538 1 4224 Paenibacillus donghaensis species 414771 0 Thermobacillus 4694 2 27 76632 genus 0 1 377615 species 0 Thermobacillus composti 4667 1 1 0 genus 55080 37 4 6247 Brevibacillus species 1393 0 1 2382 Brevibacillus brevis 0 species 1465 2300 Brevibacillus laterosporus 1 0 species 54913 1 1528 Brevibacillus formosus 3 3494 85151 no rank 0 1 0 genus 55079 11 3494 Aneurinibacillus 3 0 no rank 2642329 1 1490 0 species 1450761 1 1490 Aneurinibacillus sp. XH2 0 species 1500254 1 1993 Aneurinibacillus soli family 186823 80 1 0 12900 Alicyclobacillaceae 9 3 3070 Kyrpidia 1 0 genus 139 1129704 1 1337 Kyrpidia sp. EA-1 species 2055160 0 1594 Kyrpidia tusciae 1 0 species 33943 0 1 29330 44 genus 2 Alicyclobacillus 3734 1 Alicyclobacillus acidocaldarius 3690 405212 species 0 6016 Tumebacillus 3 genus 38 432330 1 0 0 1214604 species Tumebacillus algifaecis 1911 1 species 1903704 0 4067 Tumebacillus avium 1 2199 Sporolactobacillaceae 2 family 186821 5 1 0 1 2194 663587 no rank 0 [Bacillus] selenitireducens 2194 1 0 85683 species 0 1 3529 90964 family Staphylococcaceae 42953 42 33 34029 Staphylococcus genus 1279 1484 1 0 species 28035 0 560 Staphylococcus lugdunensis 1 species 61015 0 633 Staphylococcus succinus 1 1282 species 0 Staphylococcus epidermidis 1822 1 1 746 Staphylococcus argenteus 0 species 985002 214473 species 0 1 Staphylococcus nepalensis 747 720 Staphylococcus cohnii 1 0 species 29382 1 Staphylococcus saprophyticus 798 0 29385 species species 1283 0 1 923 Staphylococcus haemolyticus Staphylococcus pasteuri 1831 1 45972 species 0 736 Staphylococcus felis 1 species 46127 0 29384 species 0 1 Staphylococcus kloosii 692 species 1295 0 1 916 Staphylococcus schleiferi species 643214 0 856 Staphylococcus stepanovicii 1 700 Staphylococcus hominis 1 species 1290 0 species 1280 0 1 4745 Staphylococcus aureus species 308354 0 1 742 Staphylococcus simiae 1 Staphylococcus agnetis 508 985762 species 0 0 species 70258 618 Staphylococcus piscifermentans 1 0 170573 species Staphylococcus pettenkoferi 741 1 Staphylococcus equorum 1030 1 246432 species 0 0 species 1294 1 474 Staphylococcus muscae 1 Staphylococcus hyicus 880 0 1284 species Staphylococcus pseudintermedius 2026 1 283734 species 0 1 Staphylococcus capitis 738 0 29388 species 0 70255 species Staphylococcus condimenti 1110 1 1 Staphylococcus sciuri 860 1296 species 0 species 1292 0 1 1071 Staphylococcus warneri species 155085 0 446 Staphylococcus lutrae 1 no rank 91994 0 1 787 1 Staphylococcus sp. AntiMn-1 787 0 1715860 species 1 Staphylococcus xylosus 1237 0 1288 species 0 1286 species 1 Staphylococcus simulans 1125 species 1281 0 727 Staphylococcus carnosus 1 2 Auricoccucs 590 0 1 18 2005363 genus 1 572 Auricoccus indicus species 1849491 0 4 3416 Macrococcus 1 0 genus 42 69965 Macrococcus canis 1158 1 0 1855823 species species 69966 0 1 1459 Macrococcus caseolyticus 0 2619255 no rank 1 757 species 1898474 0 757 Macrococcus sp. IME1552 1 45669 19 genus 0 1 2 Salinicoccus 1389 0 407035 species Salinicoccus halodurans 1370 1 166 Lactobacillales 498971 0 1 186826 7530 order 8 6433 Aerococcaceae family 186827 8 1 0 6425 Aerococcus 7 1 0 genus 91 1375 0 51665 species Aerococcus urinaeequi 948 1 128944 species 0 Aerococcus urinaehominis 785 1 0 87541 species 1 Aerococcus christensenii 1509 0 119206 species 1 Aerococcus sanguinicola 1058 1172 Aerococcus urinae 1 0 species 1376 1 Aerococcus viridans 862 1377 species 0 12 81850 family 0 1 18 Leuconostocaceae 8399 genus 1243 78 1 0 3851 Leuconostoc 9 0 136609 species Leuconostoc kimchii 516 1 0 1245 species 1 Leuconostoc mesenteroides 838 361 1 0 no rank 2685106 0 species 979982 1 361 Leuconostoc sp. C2 0 species 1252 307 Leuconostoc carnosum 1 1 Leuconostoc garlicum 273 255248 species 0 Leuconostoc citreum 472 1 33964 species 0 1246 species 0 Leuconostoc lactis 342 1 1 664 Leuconostoc gelidum species 1244 0 922 Oenococcus 2 1 0 genus 3 46254 Oenococcus oeni 919 1 0 1247 species 6 46255 genus 0 1 Weissella 3614 6 species 1249 0 1 288 Weissella paramesenteroides Weissella jogaejeotgali 468 1 0 1631871 species 759620 species 0 Weissella ceti 222 1 Weissella cibaria 1856 1 0 137591 species Weissella koreensis 774 1 165096 species 0 family 186828 12 1 0 6605 Carnobacteriaceae 11 Carnobacterium 4024 5 93 2747 genus 0 1 1117 Carnobacterium inhibens 1 0 species 147709 species 2751 0 1 1149 Carnobacterium maltaromaticum 2 1665 0 no rank 257487 Carnobacterium sp. CP1 840 1 1564681 species 0 Carnobacterium sp. 17-4 825 1 208596 species 0 2 Marinilactibacillus 1123 5 191769 genus 0 1 no rank 2632303 0 1118 1 Marinilactibacillus sp. 15R 1118 1 0 1911586 species 1446 Jeotgalibaca 3 genus 1470540 4 1 0 1 730 0 no rank 2621505 1903686 species 0 1 Jeotgalibaca sp. PTS2502 730 Jeotgalibaca dankookensis 712 1 708126 species 0 58 72841 Lactobacillaceae family 33958 578 1 0 genus 2767893 0 2190 3 Lactobacillus buchneri 914 1 0 1581 species 1138822 species 0 Lactobacillus curieae 576 1 700 Lactobacillus parabuchneri 1 species 152331 0 1674 2 genus 2767885 0 0 28038 species 1 Lactobacillus curvatus 802 0 1599 species Lactobacillus sakei 872 1 0 genus 2767876 1 7419 0 1603 species 1 Lactobacillus amylophilus 7419 1711 2 2767889 genus 0 species 375175 0 1 580 Lactobacillus backii 0 species 1610 1 1131 Lactobacillus coryniformis 1 462 genus 2767890 0 0 1193095 species 1 Lactobacillus hokkaidonensis 462 3 3925 2742598 genus 0 1613 species 0 1 Lactobacillus fermentum 1332 0 species 1598 1 1401 Lactobacillus reuteri species 97478 0 1 1192 Lactobacillus mucosae 447 1 0 genus 2767877 1 Lactobacillus kunkeei 447 0 148814 species 0 genus 2767879 6 5210 1 736 Lactobacillus alimentarius species 1602 0 species 1074467 0 1007 Lactobacillus heilongjiangensis 1 1612 species 0 Lactobacillus farciminis 1039 1 0 1847728 species Lactobacillus allii 738 1 species 392416 0 781 Lactobacillus crustorum 1 species 1007676 0 1 909 Lactobacillus ginsenosidimutans 0 genus 2767892 758 1 758 Lactobacillus paracollinoides 1 species 240427 0 0 genus 2767886 2168 3 1 588 Lactobacillus koreensis 0 species 637971 1 868 Lactobacillus brevis species 1580 0 Lactobacillus zymae 712 1 0 267363 species 3 5557 0 2759736 genus 0 species 1597 1629 Lactobacillus paracasei 1 0 species 47715 1670 Lactobacillus rhamnosus 1 1 2258 Lactobacillus casei 0 species 1582 0 2767842 genus 3413 3 2334 Lactobacillus plantarum 1 species 1590 0 1 Lactobacillus paraplantarum 299 60520 species 0 species 1589 0 780 Lactobacillus pentosus 1 16 Lactobacillus 23605 1578 3641 genus 0 1 1 1231 Lactobacillus gasseri 0 species 1596 Lactobacillus kefiranofaciens 795 1 267818 species 0 species 83683 0 1 618 Lactobacillus amylolyticus 0 1600 species Lactobacillus acetotolerans 409 1 Lactobacillus gallinarum 916 1 0 52242 species 1 Lactobacillus helveticus 1551 1587 species 0 0 species 33959 3344 Lactobacillus johnsonii 1 1584 species 0 1 Lactobacillus delbrueckii 3985 1604 species 0 1 Lactobacillus amylovorus 3347 0 no rank 2620435 4 1938 0 species 2099788 644 Lactobacillus sp. CBA3605 1 1545702 species 0 1 Lactobacillus sp. wkB8 367 322 Lactobacillus sp. D1501 1 species 2108362 0 2099789 species 0 Lactobacillus sp. CBA3606 605 1 0 109790 species Lactobacillus jensenii 1025 1 1 805 Lactobacillus acidophilus 0 species 1579 genus 2767881 0 935 2 0 1625 species Lactobacillus sanfranciscensis 394 1 53444 species 0 Lactobacillus lindneri 541 1 0 2767887 genus 4 8446 0 1624 species 1 Lactobacillus salivarius 3241 1 1623 Lactobacillus agilis 0 species 1601 2617 Lactobacillus ruminis 1 0 species 1623 1 Lactobacillus acidipiscis 965 0 89059 species 6 4343 Pediococcus 1 0 genus 1253 20 187452 species 0 1 Pediococcus claussenii 871 Pediococcus damnosus 646 1 51663 species 0 species 1255 0 1 1140 Pediococcus pentosaceus species group 1670797 0 1244 1 0 1254 species Pediococcus acidilactici 1244 1 0 114090 species 1 Pediococcus inopinatus 422 61500 Enterococcaceae 20 1 0 family 80 81852 4964 1350 genus 0 1 Enterococcus 57232 12 0 species 53346 944 Enterococcus mundtii 1 0 species 37734 1 1116 Enterococcus casseliflavus 0 species 1351 11082 Enterococcus faecalis 1 1 Enterococcus faecium 30992 1352 species 0 3 3009 0 no rank 2608891 0 species 2060307 1 1213 Enterococcus sp. FDAARGOS_375 2057791 species 0 Enterococcus sp. CR-Ec1 867 1 1 929 Enterococcus sp. FDAARGOS_163 0 species 2060306 Enterococcus hirae 1400 1 0 1354 species 1 Enterococcus durans 1559 0 53345 species species 2005703 0 1 1393 Enterococcus wangshanyuanii 0 species 417368 1 773 Enterococcus thailandicus 0 1 1 51668 genus Tetragenococcus 1305 2 1 1304 Tetragenococcus halophilus 0 species 51669 2 Melissococcus 1092 0 1 1 33969 genus 1091 Melissococcus plutonius 1 0 species 33970 Vagococcus 1791 3 0 1 6 2737 genus 1 Vagococcus teuberi 768 0 519472 species 0 633807 species 1 Vagococcus penaei 1017 883 1 263855 no rank 0 1 Lactobacillales bacterium 883 0 1993866 species 334780 Streptococcaceae 49 family 5887 1300 1 0 1301 8994 genus 0 1 43 Streptococcus 320607 150055 species 0 1 Streptococcus lutetiensis 5638 Streptococcus uberis 733 1 1349 species 0 1 2654 Streptococcus pneumoniae species 1313 0 0 species 45634 1 1765 Streptococcus cristatus species 82348 0 1 670 Streptococcus pluranimalium 1311 species 0 1 Streptococcus agalactiae 21744 0 1305 species Streptococcus sanguinis 2257 1 0 257758 species 1 Streptococcus pseudopneumoniae 1318 Streptococcus gallolyticus 2370 1 315405 species 0 1825069 species 0 1 Streptococcus marmotae 1075 0 species 1307 1 39097 Streptococcus suis 1888195 species 0 1 Streptococcus himalayensis 902 Streptococcus gordonii 3402 1 1302 species 0 1348 species 0 Streptococcus parauberis 1186 1 1 Streptococcus merionis 666 0 400065 species 1326 species 0 1 Streptococcus acidominimus 5422 2741 Streptococcus pyogenes 1 0 species 1314 0 1335 species 1 Streptococcus equinus 6974 0 species 1318 6825 Streptococcus parasanguinis 1 0 species 1309 1258 Streptococcus mutans 1 species 1303 0 1 5845 Streptococcus oralis 1 Streptococcus salivarius 48151 1304 species 0 0 species 1308 3787 Streptococcus thermophilus 1 1346 species 0 Streptococcus iniae 1399 1 119603 species group 0 3315 2 0 species 1334 1 1159 Streptococcus dysgalactiae 1336 species 0 Streptococcus equi 2156 1 81911 7 0 2608887 no rank Streptococcus sp. NPS 308 1497 1 1902136 species 0 Streptococcus sp. 'group B' 574 1 0 1319 species 0 1156431 species Streptococcus sp. I-G2 26109 1 11557 Streptococcus sp. A12 1 0 species 1759399 27466 Streptococcus sp. I-P16 1 0 species 1156433 11949 Streptococcus sp. FDAARGOS_192 1 species 1839799 0 species 712633 0 1 2759 Streptococcus sp. oral taxon 431 species 102684 0 5734 Streptococcus infantarius 1 Streptococcus mitis 5595 1 0 28037 species 1 Streptococcus macedonicus 964 0 59310 species 33745 3 0 species group 671232 0 species 1328 22586 Streptococcus anginosus 1 1 2134 Streptococcus intermedius 0 species 1338 1 Streptococcus constellatus 9025 0 76860 species 1814128 species 0 Streptococcus halotolerans 859 1 1811193 species 0 1 Streptococcus pantholopis 1717 9894 Streptococcus pasteurianus 1 0 species 197614 8286 Lactococcus 5 1 0 genus 1357 25 0 1363 species 1 Lactococcus garvieae 1714 688 Lactococcus piscium 1 0 species 1364 0 1366 species Lactococcus raffinolactis 709 1 1358 species 0 Lactococcus lactis 5150 1 class 1676648 18 1 0 2942 Limnochordia 5 1 0 order 58 1676649 4 2924 Limnochordales 2866 Limnochordaceae 3 family 1676650 21 1 0 genus 1676651 46 1 0 2845 Limnochorda 2 species 1555112 0 1 2799 Limnochorda pilosa 19 Tissierellia 29582 8 1737404 class 0 1 0 no rank 1737407 1527 2 1 0 genus 1582879 31 1527 Ezakiella 2 1 1496 Ezakiella massiliensis 0 species 1852374 0 1 1737405 1034 order 16 Tissierellales 28047 12 Peptoniphilaceae 25384 0 1 1570339 5576 family 2 2312 Finegoldia genus 29 150022 1 0 1 2283 Finegoldia magna 0 species 1260 3 Anaerococcus 4178 165779 12 genus 0 1 1870984 species 0 Anaerococcus mediterraneensis 2141 1 33034 species 0 1 Anaerococcus prevotii 2025 Murdochiella 9490 2 2 1161127 genus 0 1 1 Murdochiella vaginalis 9488 0 1852373 species Parvimonas 2330 2 543311 37 genus 0 1 Parvimonas micra 2293 1 33033 species 0 162289 19 genus 0 1 Peptoniphilus 1498 2 2637196 no rank 0 1 1479 0 1912856 species 1 Peptoniphilus sp. ING2-D1G 1479 1629 Gottschalkiaceae 3 1 0 family 2042895 8 2 1621 Gottschalkia 1 0 genus 2 1505664 1556 species 0 1 Gottschalkia acidurici 1619 no rank 33974 0 3181 2 genus 1930845 40 1 0 3181 Ndongobacter 2 1 Ndongobacter massiliensis 3141 0 1871025 species 16 526524 class 0 1 Erysipelotrichia 35036 11 526525 35 order 0 1 Erysipelotrichales 35020 10 1 0 family 208 128827 9 34985 Erysipelotrichaceae 6140 Turicibacter 2 1 0 genus 191303 55 0 no rank 2638206 6085 1 1 Turicibacter sp. H121 6085 0 1712675 species 1 18824 no rank 544447 0 1834207 species 0 Erysipelotrichaceae bacterium I46 18824 1 Erysipelothrix 2446 3 0 1 1647 46 genus 1514105 species 0 Erysipelothrix larvae 1245 1 0 species 1648 1155 Erysipelothrix rhusiopathiae 1 1 0 genus 1729679 27 7367 Faecalibaculum 2 species 1702221 0 1 7340 Faecalibaculum rodentium 224 Clostridia 8894465 0 1 186801 595 class order 3 485256 1 0 4 1129 Natranaerobiales 485255 7 family 0 1 3 Natranaerobiaceae 1126 2 Natranaerobius 1119 0 1 43 375928 genus 1 1076 Natranaerobius thermophilus 0 species 375929 order 186802 27589 1 0 8843392 Clostridiales 164 0 1 1405 541000 family Ruminococcaceae 5068050 12 2217 216851 genus 0 1 2 Faecalibacterium 3836729 species 853 0 3834512 Faecalibacterium prausnitzii 1 1 12840 no rank 552397 0 1 12840 [Clostridium] cellulosi 0 species 29343 3 1045094 Ruminococcus genus 333 1263 1 0 0 species 1160721 1 1019240 Ruminococcus bicirculans 0 species 1264 1 25521 Ruminococcus albus 28980 1 no rank 2305133 0 Ruminococcaceae bacterium CPB6 28980 1 1572656 species 0 0 1 34 253238 genus 2 Ethanoligenens 23585 0 253239 species 1 Ethanoligenens harbinense 23551 2 119417 Flavonifractor genus 243 946234 1 0 species 292800 0 119174 Flavonifractor plautii 1 29 Peptococcaceae 50578 0 1 186807 194 family 4 Desulfosporosinus 6324 79206 118 genus 0 1 0 species 1563 1 1860 Desulfosporosinus orientis 0 79209 species Desulfosporosinus meridiei 1892 1 0 885581 species Desulfosporosinus acidiphilus 2454 1 8989 Dehalobacter 4 genus 102 56112 1 0 0 2635733 no rank 5857 2 1 Dehalobacter sp. DCA 2880 0 1147129 species 1 Dehalobacter sp. CF 2977 1131462 species 0 0 55583 species 1 Dehalobacter restrictus 3030 2 Syntrophobotulus 2543 0 1 15 51196 genus Syntrophobotulus glycolicus 2528 1 51197 species 0 5 10779 Desulfitobacterium genus 109 36853 1 0 0 142877 species 1 Desulfitobacterium metallireducens 1768 species 36854 0 1 2059 Desulfitobacterium dehalogenans 1 4632 Desulfitobacterium hafniense 0 species 49338 233055 species 0 1 Desulfitobacterium dichloroeliminans 2211 2 Dehalobacterium 4807 7 51514 genus 0 1 4800 Dehalobacterium formicoaceticum 1 species 51515 0 14 471826 genus 0 1 2 Candidatus Desulforudis 1955 1 1941 Candidatus Desulforudis audaxviator species 471827 0 2 Thermincola 1572 0 1 278993 10 genus 1 Thermincola potens 1562 863643 species 0 0 genus 2282742 2075 1 Desulfotomaculum acetoxidans 2075 1 58138 species 0 Desulfotomaculum 8802 5 0 1 140 1562 genus 0 species 1833852 1 2082 Desulfotomaculum ferrireducens 0 59610 species Desulfotomaculum reducens 1885 1 1 1635 Desulfotomaculum nigrificans 0 species 1565 1 Desulfotomaculum ruminis 3060 0 1564 species 1 2538 0 2282740 genus 2538 Desulfotomaculum gibsoniae 1 0 species 102134 0 family 68298 3 2734 1 0 genus 129001 1 1341 Syntrophothermus 2 1 1340 Syntrophothermus lipocalidus species 86170 0 1393 1 0 genus 862 1 1393 Syntrophomonas wolfei species 863 0 family 543349 32 1 0 3 5890 Symbiobacteriaceae 0 1 2733 34 genus 2 Symbiobacterium 5858 1 Symbiobacterium thermophilum 5824 0 2734 species 41 177312 Clostridiaceae family 31979 1461 1 0 0 1 26 114627 genus 3 Alkaliphilus 5056 species 461876 0 1 2258 Alkaliphilus oremlandii 0 species 208226 2772 Alkaliphilus metalliredigens 1 1485 1351 genus 0 1 Clostridium 161551 30 1 Clostridium autoethanogenum 3051 0 84023 species 1548 species 0 1 Clostridium scatologenes 3856 1497 species 0 Clostridium formicaceticum 2269 1 5204 Clostridium pasteurianum 1 0 species 1501 Clostridium cochlearium 4098 1 0 1494 species 2482 Clostridium novyi 1 species 1542 0 217159 species 0 1 Clostridium carboxidivorans 2979 2371 Clostridium sporogenes 1 0 species 1509 species 1520 0 1 7196 Clostridium beijerinckii Clostridium estertheticum 2755 1 238834 species 0 5522 Clostridium butyricum 1 0 species 1492 3734 Clostridium tetani 1 species 1513 0 84022 species 0 Clostridium aceticum 2443 1 1491 species 0 Clostridium botulinum 16109 1 3462 Clostridium bornimense 1 species 1216932 0 0 species 169679 1 3938 Clostridium saccharobutylicum 1 2762 Clostridium chauvoei 0 species 46867 2 42829 0 no rank 2614128 1 Clostridium sp. BNL1100 5768 0 755731 species 1 37061 Clostridium sp. SY8519 0 species 1042156 2604 Clostridium taeniosporum 1 0 species 394958 Clostridium ljungdahlii 3214 1 0 1538 species 1 5002 Clostridium baratii species 1561 0 0 species 1534 1 6220 Clostridium kluyveri 5264 Clostridium cellulovorans 1 0 species 1493 species 29341 0 1 4073 Clostridium argentinense 0 species 1502 6143 Clostridium perfringens 1 0 species 1488 1 2738 Clostridium acetobutylicum 0 1519 species Clostridium tyrobutyricum 3137 1 1 4745 Clostridium saccharoperbutylacetonicum 0 species 36745 0 genus 1981033 435 Mordavella 1 3834 Candidatus Arthromitus 4 1 0 genus 49082 99 0 2638829 no rank 3735 3 Candidatus Arthromitus sp. SFB-mouse-NL 1172 1 0 1508644 species 1041504 species 0 1 Candidatus Arthromitus sp. SFB-rat-Yit 1379 Candidatus Arthromitus sp. SFB-mouse 1184 1 49118 species 0 2 Geosporobacter 4975 0 1 18 390805 genus 1 4957 Geosporobacter ferrireducens 0 species 1424294 0 1 186804 925 family 12 Peptostreptococcaceae 166103 2 Paeniclostridium 3747 1 1849828 genus 0 1 0 1505 species 1 Paeniclostridium sordellii 3746 0 no rank 1411023 1 2693 0 2081703 species 1 Peptostreptococcaceae bacterium oral taxon 929 2693 2 Acetoanaerobium 2717 0 1 186831 5 genus 1 Acetoanaerobium sticklandii 2712 0 1511 species 10 44259 genus 0 1 Filifactor 2330 2 143361 species 0 1 Filifactor alocis 2320 2 Clostridioides 150649 0 1 476 1870884 genus 1 Clostridioides difficile 150173 1496 species 0 1481960 27 genus 0 1 2 Peptoclostridium 3042 species 1731 0 1 3015 Peptoclostridium acidaminophilum family 127 990719 1 0 46282 Christensenellaceae 3 Christensenella 46155 2 1238 990721 genus 0 1 1 44917 Christensenella massiliensis 0 species 1805714 54116 Oscillospiraceae 3 family 21 216572 1 0 1 0 genus 178 459786 54095 Oscillibacter 2 0 species 351091 1 53917 Oscillibacter valericigenes 234950 10 no rank 538999 0 1477 1392389 genus 0 1 2 Intestinimonas 134714 0 1297617 species 1 Intestinimonas butyriciproducens 133237 4 10387 Clostridiales Family XIII. Incertae Sedis family 17 543314 1 0 5440 [Eubacterium] sulci 1 0 species 143393 2 Mogibacterium 4930 16 86331 genus 0 1 species 114527 0 1 4914 Mogibacterium diversum 85819 1 genus 2717089 0 1 Mordavella sp. Marseille-P3756 85819 0 2086584 species Clostridiales Family XVII. Incertae Sedis 4030 3 0 1 539000 10 family 1 0 genus 73918 23 2 4020 Thermaerobacter species 73919 0 3997 Thermaerobacter marianensis 1 0 family 2304686 12 84562 2 1717 Fastidiosipila 1 0 genus 236752 2 236753 species 0 1 Fastidiosipila sanguinis 1715 3549 1 2304691 genus 0 species 1510 0 3549 [Clostridium] stercorarium 1 6305 1 0 2304693 genus 6305 [Clostridium] thermosuccinogenes 1 0 species 84032 3 11824 2304692 genus 0 0 1677857 species Herbivorax saccincola 3146 1 1 3828 [Clostridium] clariflavum 0 species 288965 Ruminiclostridium thermocellum 4850 1 1515 species 0 Mageeibacillus 4890 2 3 1637257 genus 0 1 4887 Mageeibacillus indolicus 1 0 species 884684 Ruminiclostridium 6879 2 811 1508657 genus 0 1 1 6068 [Clostridium] cellulolyticum 0 species 1521 0 no rank 2305130 1 49398 49398 Ruminiclostridium sp. KB18 1 0 species 1834198 3 5961 Heliobacteriaceae 1 0 family 31984 11 2 Heliobacterium 5950 120 2697 genus 0 1 Heliobacterium modesticaldum 5830 1 0 35701 species 3382 186803 family 0 1 Lachnospiraceae 2888371 27 Blautia 159463 3 233 572511 genus 0 1 1 48700 0 2648079 no rank 1 Blautia sp. YL58 48700 1796616 species 0 Blautia hansenii 110530 1 0 1322 species 31264 1 2719231 genus 0 species 84030 0 31264 [Clostridium] saccharolyticum 1 2719313 genus 0 1 119160 208479 species 0 [Clostridium] bolteae 119160 1 156909 1 genus 2569097 0 1 [Eubacterium] hallii 156909 39488 species 0 186928 no rank 0 2 1240312 1218561 [Eubacterium] rectale 1 species 39491 0 0 species 712991 21751 Lachnospiraceae bacterium oral taxon 500 1 2 Herbinix 8932 1663717 31 genus 0 1 1 8901 Herbinix luporum 0 species 1679721 genus 207244 203 1 0 150682 Anaerostipes 2 1 150479 Anaerostipes hadrus species 649756 0 Lachnoclostridium 138850 4 707 1506553 genus 0 1 1 12708 Lachnoclostridium phytofermentans species 66219 0 1 Lachnoclostridium phocaeense 86269 1871021 species 0 1 39166 0 no rank 2608895 39166 Lachnoclostridium sp. YL32 1 0 species 1834196 Roseburia 477063 2 0 1 841 60 genus 0 species 301301 1 477003 Roseburia hominis 0 1 60 830 genus 3 Butyrivibrio 45817 23294 Butyrivibrio hungatei 1 0 species 185008 Butyrivibrio proteoclasticus 22463 1 0 43305 species genus 698776 2 1 0 2 6216 Cellulosilyticum 29360 species 0 1 Cellulosilyticum lentocellum 6214 339860 1 genus 28050 0 339860 [Eubacterium] eligens 1 0 species 39485 2039240 13 genus 0 1 2 Anaerotignum 10461 0 28446 species Anaerotignum propionicum 10448 1 1 0 family 28 186806 30894 Eubacteriaceae 5 28600 Eubacterium 2 1 0 genus 1409 1730 Eubacterium limosum 27191 1 0 1736 species 15 33951 genus 0 1 2 Acetobacterium 2266 Acetobacterium woodii 2251 1 33952 species 0 40068 Thermoanaerobacterales 39 order 68295 59 1 0 family 76 543371 1 0 13 17973 Thermoanaerobacterales Family III. Incertae Sedis 1 0 genus 28895 26 3 4596 Thermoanaerobacterium 0 species 29329 1 1719 Thermoanaerobacterium xylanolyticum 1 Thermoanaerobacterium thermosaccharolyticum 2851 1517 species 0 Caldicellulosiruptor 13301 9 0 1 44000 353 genus 0 31899 species Caldicellulosiruptor bescii 1603 1 1 Caldicellulosiruptor hydrothermalis 1369 0 413888 species 1942 Caldicellulosiruptor kristjanssonii 1 species 52765 0 1 Caldicellulosiruptor saccharolyticus 1043 44001 species 0 52766 species 0 1 Caldicellulosiruptor lactoaceticus 1662 Caldicellulosiruptor owensensis 1804 1 55205 species 0 0 species 717609 1 1891 Caldicellulosiruptor obsidiansis 1634 Caldicellulosiruptor kronotskyensis 1 0 species 413889 0 1 51 186814 family Thermoanaerobacteraceae 19738 20 4 4380 0 no rank 42857 2668 Moorella 2 genus 11 44260 1 0 0 species 1525 1 2657 Moorella thermoacetica 15 42837 genus 0 1 Ammonifex 1712 2 species 42838 0 1697 Ammonifex degensii 1 2 1445 Caldanaerobacter 1 0 genus 249529 8 1 Caldanaerobacter subterraneus 1437 0 911092 species 140458 10 genus 0 1 Thermacetogenium 1220 2 85874 species 0 Thermacetogenium phaeum 1210 1 genus 129957 25 1 0 2 1244 Carboxydothermus Carboxydothermus hydrogenoformans 1219 1 129958 species 0 1754 407 genus 0 1 9 Thermoanaerobacter 11398 1 1266 Thermoanaerobacter mathranii 0 species 583357 1522 Thermoanaerobacter kivui 1 species 2325 0 species 496866 0 1309 Thermoanaerobacter pseudethanolicus 1 1 1231 Thermoanaerobacter italicus 0 species 108150 1 Thermoanaerobacter wiegelii 1563 0 46354 species 2 2791 0 2636821 no rank 1 Thermoanaerobacter sp. X514 1302 0 399726 species 0 species 573062 1489 Thermoanaerobacter sp. X513 1 1 Thermoanaerobacter brockii 1309 29323 species 0 636 2 227387 family 0 636 Thermodesulfobium 2 1 0 genus 227388 2 0 184064 species 1 Thermodesulfobium narugense 634 1662 Thermoanaerobacterales Family IV. Incertae Sedis 3 family 11 543372 1 0 2 1651 Mahella 1 0 genus 252965 9 0 species 252966 1642 Mahella australiensis 1 0 order 2770089 4 2979 2770092 family 0 1466 2 2 1466 Tepidanaerobacter genus 499228 1 1 0 Tepidanaerobacter acetatoxydans 1465 1 0 499229 species 1513 2 0 2770093 family 2 Thermosediminibacter 1513 291988 11 genus 0 1 0 291990 species Thermosediminibacter oceani 1502 1 1 0 order 53433 1 12 6302 Halanaerobiales 5 Halobacteroidaceae 3000 14 53434 family 0 1 genus 3 42417 1 0 2 1067 Halobacteroides Halobacteroides halobius 1064 1 0 42422 species genus 1 28186 1 0 2 1919 Acetohalobium 1 Acetohalobium arabaticum 1918 0 28187 species 0 1 3 972 family Halanaerobiaceae 3301 6 0 1 31 2330 genus 3 Halanaerobium 2101 2331 species 0 Halanaerobium praevalens 875 1 0 species 656519 1 1195 Halanaerobium hydrogeniformans 1197 Halothermothrix 2 genus 9 32636 1 0 1 Halothermothrix orenii 1188 0 31909 species 1745 1 0 no rank 84086 243899 species 0 endosymbiont 'TC1' of Trimyema compressum 1745 1 0 1798711 clade 154 73181 154 73181 Cyanobacteria phylum 1117 22 1 0 1 316 0 1983111 no rank 316 cyanobacterium endosymbiont of Epithemia turgida 1 species 718217 0 6 Gloeobacteria 3635 32 307596 class 0 1 3603 Gloeobacterales 5 order 307595 64 1 0 0 1 1890422 21 family 4 Gloeobacteraceae 3539 genus 33071 39 1 0 3518 Gloeobacter 3 0 1416614 species 1 Gloeobacter kilaueensis 1317 1 2162 Gloeobacter violaceus species 33072 0 0 1 1890424 375 order 57 Synechococcales 35077 family 1890428 1 1 0 1483 Merismopediaceae 5 genus 1142 41 1 0 1482 Synechocystis 4 1441 3 0 no rank 2640012 Synechocystis sp. PCC 6714 603 1 0 1147 species 0 species 1148 1 419 Synechocystis sp. PCC 6803 species 2116702 0 1 419 Synechocystis sp. IPPAS B-1465 1890429 family 0 383 2 2 Acaryochloris 383 0 1 1 155977 genus species 155978 0 382 Acaryochloris marina 1 24889 Synechococcaceae 33 1 0 family 155 1890426 1129 346 genus 0 1 26 Synechococcus 18373 0 species 33070 1 505 Synechococcus lividus 32046 species 0 1 Synechococcus elongatus 689 16833 23 no rank 2626047 0 1 802 Synechococcus sp. KORDI-100 0 species 1280380 32051 species 0 Synechococcus sp. WH 7803 827 1 1 Synechococcus sp. PCC 73109 436 374982 species 0 Synechococcus sp. RCC307 1196 1 0 316278 species species 321332 0 1 992 Synechococcus sp. JA-2-3B'a(2-13) 1 904 Synechococcus sp. KORDI-49 species 585423 0 0 195253 species Synechococcus sp. PCC 6312 368 1 species 166314 0 908 Synechococcus sp. WH 8109 1 1916956 species 0 Synechococcus sp. SynAce01 1020 1 565 Synechococcus sp. PCC 7502 1 0 species 1173263 32049 species 0 1 Synechococcus sp. PCC 7002 328 29410 species 0 Synechococcus sp. WH 8103 1118 1 519 Synechococcus sp. PCC 7003 1 0 species 374981 0 585425 species Synechococcus sp. KORDI-52 626 1 321327 species 0 1 Synechococcus sp. JA-3-3Ab 1887 1 Synechococcus sp. NIES-970 354 0 1827144 species 1 Synechococcus sp. CC9311 405 0 64471 species Synechococcus sp. PCC 8807 289 1 0 195248 species 1 352 Synechococcus sp. CC9902 species 316279 0 1 892 Synechococcus sp. CC9605 0 species 110662 1 Synechococcus sp. UTEX 2973 679 0 1350461 species 1 Synechococcus sp. PCC 7117 277 195498 species 0 species 84588 0 1089 Synechococcus sp. WH 8102 1 146785 genus 0 1 344 0 146786 species Thermosynechococcus elongatus 344 1 2 343 Dactylococcopsis 1 0 genus 13034 5 0 species 292566 1 338 Dactylococcopsis salina 3 Cyanobium 5674 0 1 167375 57 genus 0 species 59930 2431 Cyanobium gracile 1 0 2627006 no rank 1 3186 3186 Cyanobium sp. NIES-981 1 species 1851505 0 5 2881 Prochloraceae 1 0 family 1213 3 genus 13 1218 1 0 2878 Prochlorococcus 4 0 no rank 2627481 2 624 0 1501269 species Prochlorococcus sp. MIT 0801 352 1 species 1501268 0 1 272 Prochlorococcus sp. MIT 0604 1219 species 0 Prochlorococcus marinus 2241 1 0 family 2303730 891 2 2 Halomicronema 891 0 1 19 170610 genus 1209493 species 0 Halomicronema hongdechloris 872 1 3 Pseudanabaenaceae 566 1890436 1 family 0 1 2 Pseudanabaena 565 1152 1 genus 0 1 0 no rank 2593292 564 1 564 Pseudanabaena sp. PCC 7367 1 0 species 82654 Leptolyngbyaceae 3609 6 0 1 1890438 11 family 5 Leptolyngbya 3598 47251 12 genus 0 1 1184 species 0 Leptolyngbya boryana 549 1 3037 3 no rank 2650499 0 1080068 species 0 Leptolyngbya sp. O-77 1802 1 0 species 1752064 572 Leptolyngbya sp. NIES-3755 1 0 species 111781 663 Leptolyngbya sp. PCC 7376 1 order 1890505 0 636 3 3 Chroococcidiopsidaceae 636 1890528 1 family 0 1 635 Chroococcidiopsis 2 1 0 genus 54298 7 0 species 54299 1 628 Chroococcidiopsis thermalis 0 subclass 1301283 15735 44 19 Oscillatoriales 6904 0 1 40 1150 order Coleofasciculaceae 1794 3 1892251 13 family 0 1 63132 7 genus 0 1 Geitlerinema 1781 2 1 1774 2648775 no rank 0 1 Geitlerinema sp. PCC 7407 1774 1173025 species 0 5 Oscillatoriaceae 2166 0 1 14 1892254 family genus 1155738 0 766 1 0 1155739 species Moorea producens 766 1 2 1158 genus 0 1 Oscillatoria 1386 3 1 653 Oscillatoria nigro-viridis 0 species 482564 118323 species 0 Oscillatoria acuminata 731 1 603 Gomontiellaceae 3 family 44 1892255 1 0 1 0 genus 4 241421 2 559 Crinalium 555 Crinalium epipsammum 1 0 species 241425 family 4 1892252 1 0 4 1578 Microcoleaceae 803 Microcoleus 2 1 0 genus 5 44471 0 2642155 no rank 1 798 0 species 1173027 1 798 Microcoleus sp. PCC 7113 0 1205 genus 771 1 1 771 Trichodesmium erythraeum species 1206 0 723 Cyanothecaceae 3 1 0 family 1892249 8 2 715 Cyanothece 1 0 genus 43988 23 1 692 2649277 no rank 0 692 Cyanothece sp. PCC 7425 1 0 species 395961 25 Chroococcales 8831 0 1 9 1118 order Chroococcaceae 2485 7 0 1 1890464 31 family 2 466 Gloeocapsa 1 0 genus 5 102231 461 1 2623012 no rank 0 1 Gloeocapsa sp. PCC 7428 461 0 1173026 species genus 268175 0 512 1 0 2648896 no rank 1 512 0 2005460 species Chondrocystis sp. NIES-4102 512 1 genus 669357 2 1 0 3 1476 Geminocystis 1474 2 2625037 no rank 0 1 Geminocystis sp. NIES-3708 745 0 1615909 species Geminocystis sp. NIES-3709 729 1 0 1617448 species 1 0 family 1890450 6 10 3634 Aphanothecaceae 0 28070 genus 2 1390 1 740 2546356 species 0 740 Cyanothece sp. PCC 7424 1 strain 65393 0 0 2546359 species 650 1 0 strain 497965 1 650 Cyanothece sp. PCC 7822 0 92682 no rank 2 378 1 0 genus 76023 8 378 Halothece 2 1 370 0 2632878 no rank 0 65093 species 1 Halothece sp. PCC 7418 370 1 513 0 263510 genus 1 513 2546360 species 0 0 strain 43989 513 Cyanothece sp. ATCC 51142 1 1 1453359 genus 0 1 Candidatus Atelocyanobacterium 353 2 352 Candidatus Atelocyanobacterium thalassa 1 0 species 713887 0 2546365 genus 994 2 2 994 2546366 species 0 517 Cyanothece sp. PCC 8801 1 0 strain 41431 477 Cyanothece sp. PCC 8802 1 0 strain 395962 5 1890452 family 0 1 Cyanobacteriaceae 719 3 102234 1 genus 0 1 Cyanobacterium 714 2 0 species 379064 1 713 Cyanobacterium aponinum 4 Microcystaceae 1984 0 1 8 1890449 family 1976 Microcystis 3 genus 1125 13 1 0 1 1242 Microcystis aeruginosa species 1126 0 2643300 no rank 0 721 1 Microcystis sp. MC19 721 1 0 1967666 species order 1161 54 1 0 15969 Nostocales 34 343 Hapalosiphonaceae 3 family 7 1892263 1 0 2 Fischerella 336 2 1190 genus 0 1 1 334 0 494603 no rank 0 species 1752063 1 334 Fischerella sp. NIES-3754 0 1 1162 76 family 18 Nostocaceae 9632 1 0 genus 83 1177 10 6411 Nostoc 1090 Nostoc flagelliforme 1 0 species 1306274 7 4398 2593658 no rank 0 0 species 1869241 486 Nostoc sp. CENA543 1 0 1261031 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 734 1 0 species 28072 505 Nostoc sp. PCC 7524 1 1 Nostoc sp. PCC 7107 493 317936 species 0 0 1618022 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 525 1 0 species 103690 1 731 Nostoc sp. PCC 7120 Nostoc sp. NIES-3756 924 1 0 1751286 species 840 Nostoc punctiforme 1 0 species 272131 0 1 3 264688 genus Trichormus 1238 3 504 Trichormus azollae 1 0 species 1164 1 Trichormus variabilis 731 0 264691 species Anabaena 1907 4 12 1163 genus 0 1 1 725 Anabaena cylindrica species 1165 0 1170 2 no rank 2619674 0 1 Anabaena sp. 90 539 0 46234 species Anabaena sp. WA102 631 1 1647413 species 0 8 4313 0 family 2661849 8 Calothrix 4313 0 1 25 1186 genus 0 32054 species 1 Calothrix parietina 604 6 3684 0 2619626 no rank 2005469 species 0 Calothrix sp. NIES-4071 1209 1 880 Calothrix sp. NIES-4101 1 0 species 2005461 0 99598 species Calothrix sp. PCC 7507 422 1 Calothrix sp. NIES-3974 411 1 2005462 species 0 species 1954171 0 1 400 Calothrix sp. NIES-2098 1 Calothrix sp. 336/3 362 0 1337936 species no rank 1219117 0 459 1 1 Nostocales cyanobacterium HT-58-2 459 0 1940762 species 1185 4 family 0 1 Rivulariaceae 1168 3 2 1164 Rivularia genus 1 373984 1 0 1 1163 no rank 2676603 0 0 373994 species Rivularia sp. PCC 7116 1163 1 order 8 52604 1 0 8 1791 Pleurocapsales 1890500 1 family 0 1 3 Hyellaceae 728 genus 1 44474 1 0 2 727 Pleurocapsa 0 species 54308 726 Pleurocapsa minor 1 Dermocarpellaceae 1055 4 10 1890498 family 0 1 genus 2 102115 1 0 3 1045 Stanieria 1 517 0 no rank 2642663 1 Stanieria sp. NIES-3757 517 1807358 species 0 1 526 Stanieria cyanosphaera 0 species 102116 0 1 201174 130 phylum Actinobacteria 1215637 659 33 194355 Coriobacteriia 1 0 class 849 84998 103463 Coriobacteriales 14 1 0 order 525 84999 7 Atopobiaceae 25394 521 1643824 family 0 1 4 Olsenella 23008 0 1 192 133925 genus 6934 Olsenella uli 1 species 133926 0 species 1805478 0 1 11771 Olsenella sp. Marseille-P2300 0 no rank 2638792 4111 1 1 Olsenella sp. oral taxon 807 4111 712411 species 0 0 1380 genus 1 Atopobium 11 0 2767353 genus 1854 1 species 1382 0 1854 Atopobium parvulum 1 84107 1760 family 0 1 6 Coriobacteriaceae 77544 2 Coriobacterium 3051 14 33870 genus 0 1 species 33871 0 1 3037 Coriobacterium glomerans Collinsella 66607 2 54 102106 genus 0 1 0 species 74426 1 66553 Collinsella aerofaciens 0 no rank 84113 6126 1 1 6126 Coriobacteriaceae bacterium 68-1-3 species 1531429 0 Eggerthellales 90043 18 0 1 1643822 835 order 89208 Eggerthellaceae 17 1 0 family 1643826 14582 1 0 genus 84162 4 2 1190 Cryptobacterium species 84163 0 1 1186 Cryptobacterium curtum 0 1 447020 7 genus Adlercreutzia 11121 2 Adlercreutzia equolifaciens 11114 1 446660 species 0 genus 79603 2 1 0 2 4505 Denitrobacterium 1 Denitrobacterium detoxificans 4503 79604 species 0 Gordonibacter 23468 3 126 644652 genus 0 1 11918 Gordonibacter urolithinfaciens 1 0 species 1335613 Gordonibacter massiliensis 11424 1 1841863 species 0 genus 1981050 2 1 0 2 3366 Phoenicibacter Phoenicibacter massiliensis 3364 1 0 1944646 species Eggerthella 22021 3 84111 106 genus 0 1 16633 Eggerthella lenta 1 0 species 84112 2648737 no rank 0 5282 1 5282 Eggerthella sp. YY7918 1 0 species 502558 2 8955 Slackia genus 19 84108 1 0 Slackia heliotrinireducens 8936 1 84110 species 0 1760 9213 class 0 1 603 Actinobacteria 1010792 Geodermatophilales 6169 8 0 1 15 1643682 order 7 6154 Geodermatophilaceae family 161 85030 1 0 2 Modestobacter 2208 0 1 88138 56 genus Modestobacter marinus 2152 1 477641 species 0 2 Blastococcus 1621 0 1 12 38501 genus 0 138336 species 1 Blastococcus saxobsidens 1609 2 2164 Geodermatophilus 1 0 genus 1860 70 species 1861 0 1 2094 Geodermatophilus obscurus Pseudonocardiales 69253 42 85010 199 order 0 1 41 Pseudonocardiaceae 69054 0 1 2070 1231 family Saccharopolyspora 2669 2 19 1835 genus 0 1 2650 Saccharopolyspora erythraea 1 0 species 1836 Saccharomonospora 1095 2 0 1 2 1851 genus 0 species 1852 1 1093 Saccharomonospora viridis 2 2969 Lentzea 1 0 genus 16 165301 species 1586287 0 2953 Lentzea guizhouensis 1 genus 301 1813 1 0 7 17473 Amycolatopsis 1 Amycolatopsis japonica 2118 208439 species 0 0 species 31958 4244 Amycolatopsis orientalis 1 1 Amycolatopsis mediterranei 3172 0 33910 species Amycolatopsis methanolica 2596 1 0 1814 species 5042 2 2618356 no rank 0 0 1911175 species Amycolatopsis sp. BJA-103 2115 1 1 Amycolatopsis sp. AA4 2927 1896961 species 0 130 40566 genus 0 1 Actinosynnema 7461 3 40567 species 0 1 Actinosynnema mirum 3813 0 species 42197 1 3518 Actinosynnema pretiosum Prauserella 1809 2 14 142577 genus 0 1 Prauserella marina 1795 1 0 530584 species 0 1 2071 6 genus Saccharothrix 3240 2 Saccharothrix espanaensis 3234 1 0 103731 species 17 43356 genus 0 1 Kutzneria 3477 2 43357 species 0 1 Kutzneria albida 3460 Actinoalloteichus 9330 6 0 1 168 65496 genus 0 species 1612552 1 2170 Actinoalloteichus sp. ADI127-7 3636 2 0 no rank 2644606 species 2072503 0 1533 Actinoalloteichus sp. AHMU CJ021 1 1 2103 Actinoalloteichus sp. GBA129-24 0 species 1612551 1474 Actinoalloteichus hymeniacidonis 1 species 340345 0 1882 Actinoalloteichus hoggarensis 1 0 species 1470176 genus 1847 288 1 0 8 13539 Pseudonocardia 11196 6 2619320 no rank 0 1 1955 Pseudonocardia sp. HH130629-09 species 1641402 0 0 1690815 species 1 Pseudonocardia sp. HH130630-07 2009 Pseudonocardia sp. EC080610-09 1789 1 1688404 species 0 0 1096868 species Pseudonocardia sp. EC080625-04 1656 1 1 2014 Pseudonocardia sp. AL041005-10 0 species 445576 1 1773 Pseudonocardia sp. EC080619-01 0 species 1096856 240495 species 0 1 Pseudonocardia dioxanivorans 2055 0 1 7 674734 genus Alloactinosynnema 2074 2 2636053 no rank 0 2067 1 1 Alloactinosynnema sp. L-07 2067 0 1653480 species 2029 28 genus 0 1 2 Kibdelosporangium 2687 Kibdelosporangium phytohabitans 2659 1 860235 species 0 85011 482 order 0 1 82 Streptomycetales 197818 1 0 family 2062 1332 81 197336 Streptomycetaceae Streptomyces 183931 75 0 1 1883 7082 genus 1 Streptomyces niveus 1968 0 193462 species Streptomyces lydicus 6507 1 0 47763 species 1965 Streptomyces formicae 1 0 species 1616117 2 4826 species group 1477431 0 Streptomyces sampsonii 2298 1 42239 species 0 2528 Streptomyces coelicolor 1 species 1902 0 species 1940 0 1 2178 Streptomyces albireticuli 1 2173 Streptomyces sp. XZHG99 species 2049881 0 Streptomyces xiamenensis 1913 1 408015 species 0 Streptomyces peucetius 2170 1 0 1950 species 1 2167 Streptomyces albulus 0 species 68570 0 species 29303 2630 Streptomyces cattleya 1 0 species 1437453 2323 Streptomyces leeuwenhoekii 1 1 3344 Streptomyces bingchenggensis 0 species 379067 species 1783515 0 2060 Streptomyces sp. S10(2016) 1 2 3748 629295 species group 0 1917 1 species subgroup 1482558 0 Streptomyces globisporus 1917 1 1908 species 0 0 1482596 species subgroup 1 1831 0 species 1911 1831 Streptomyces griseus 1 1912 Streptomyces noursei 1 species 1971 0 0 species 1969 2462 Streptomyces chartreusis 1 24 53090 2593676 no rank 0 species 1495638 0 2635 Streptomyces sp. M56 1 0 species 2059884 1 2676 Streptomyces sp. CMB-StM0423 1 1584 Streptomyces sp. PAMC 26508 0 species 1265601 0 species 206662 1 2411 Streptomyces sp. FR-008 1 Streptomyces sp. SirexAA-E 1875 862751 species 0 444103 species 0 1 Streptomyces sp. CNQ-509 2504 1 2241 Streptomyces sp. CCM_MD2014 species 1561022 0 2253 Streptomyces sp. Sge12 1 species 1972846 0 species 2135430 0 2558 Streptomyces sp. P3 1 1 1800 Streptomyces sp. WAC00288 0 species 2094021 1 2886 Streptomyces sp. RTd22 0 species 1841249 1 1784 Streptomyces sp. TN58 0 species 234612 Streptomyces sp. 769 2333 1 0 1262452 species 0 species 1837283 1 1747 Streptomyces sp. S8 species 1964449 0 2220 Streptomyces sp. 3211 1 Streptomyces sp. CdTB01 2902 1 1725411 species 0 0 1649184 species 1 Streptomyces sp. CFMR 7 2021 1972 Streptomyces sp. CLI2509 1 species 1984801 0 Streptomyces sp. SAT1 2139 1 1849967 species 0 1 Streptomyces sp. fd1-xmd 2170 1812480 species 0 1924 Streptomyces sp. 4F 1 0 species 1751294 species 465541 0 1 2117 Streptomyces sp. Mg1 1 Streptomyces sp. MOE7 2347 0 1961713 species 0 1661694 species Streptomyces sp. Tue 6075 1991 1 1 1970 Streptomyces ambofaciens 0 species 1889 1 Streptomyces parvulus 1958 146923 species 0 1 Streptomyces malaysiensis 2393 92644 species 0 1 2297 Streptomyces autolyticus species 75293 0 0 42684 species Streptomyces collinus 1945 1 1 2343 Streptomyces alboflavus species 67267 0 species 54571 0 1 3835 Streptomyces venezuelae 0 1926 species 1 Streptomyces reticuli 2070 2454 Streptomyces scabiei 1 species 1930 0 0 species 68214 1 2412 Streptomyces griseochromogenes 0 68192 species Streptomyces cyaneogriseus 2142 1 1 Streptomyces glaucescens 2360 0 1907 species 1914 species 0 1 Streptomyces lavendulae 1850 2616 Streptomyces violaceusniger 1 species 68280 0 Streptomyces violaceoruber 1830 1 1935 species 0 Streptomyces pratensis 1635 1 0 1169025 species 1 2292 Streptomyces alfalfae 0 species 1642299 1 1702 Streptomyces rubrolavendulae species 285473 0 164348 species 0 1 Streptomyces puniciscabiei 2359 species 68202 0 1 1872 Streptomyces fulvissimus 1 2463 Streptomyces lincolnensis 0 species 1915 553510 species 0 Streptomyces gilvosporeus 2517 1 1 1605 Streptomyces pluripotens 0 species 1355015 species 1916 0 2539 Streptomyces lividans 1 0 species 1901 1 2145 Streptomyces clavuligerus 1 Streptomyces xinghaiensis 2282 0 1038928 species 1 4096 Streptomyces pactum species 68249 0 Streptomyces vietnamensis 2658 1 362257 species 0 5362 Streptomyces hygroscopicus 1 0 species 1912 2516 Streptomyces pristinaespiralis 1 0 species 38300 4989 Streptomyces albus 1 species 1888 0 1 1906 Streptomyces avermitilis 0 species 33903 12073 Kitasatospora 5 1 0 genus 213 2063 0 2066 species Kitasatospora setae 3201 1 species 68173 0 1 2307 Kitasatospora albolonga 0 no rank 2633591 3484 1 3484 Kitasatospora sp. MMS16-BH015 1 0 species 2018025 species 1894 0 2868 Kitasatospora aureofaciens 1 order 9 1643684 1 0 4 2591 Nakamurellales 3 2582 Nakamurellaceae 1 0 family 158 85031 genus 43 53460 1 0 2 2424 Nakamurella Nakamurella multipartita 2381 1 53461 species 0 8490 Frankiales 7 order 85013 24 1 0 family 132 74712 1 0 6 8466 Frankiaceae 0 1 122 1854 genus Frankia 8334 5 species 1859 0 2216 Frankia alni 1 298654 species 0 Frankia inefficax 2402 1 0 no rank 2632575 1 2244 0 298653 species 1 Frankia sp. EAN1pec 2244 species 106370 0 1350 Frankia casuarinae 1 367 1 0 52018 no rank 0 species 1650658 367 Actinobacteria bacterium IMCC26256 1 2 1610 no rank 1643818 0 Thermobispora 1610 2 5 147067 genus 0 1 Thermobispora bispora 1605 1 0 2006 species 1 0 order 85004 181 26 209407 Bifidobacteriales 25 209226 Bifidobacteriaceae family 31953 13318 1 0 1 623 genus 196081 0 Scardovia inopinata 623 1 0 78259 species 19 Bifidobacterium 192045 0 1 1678 2090 genus Bifidobacterium scardovii 4867 1 158787 species 0 Bifidobacterium pseudocatenulatum 11572 1 0 28026 species species 1680 0 1 5699 Bifidobacterium adolescentis 1093 Bifidobacterium coryneforme 1 species 1687 0 2 Bifidobacterium catenulatum 10847 0 1 1686 3989 species Bifidobacterium kashiwanohense 6858 1 630129 subspecies 0 1691 species 0 1 Bifidobacterium indicum 1162 species 33905 0 2279 Bifidobacterium thermophilum 1 0 species 638619 1 1425 Bifidobacterium actinocoloniiforme 1683 species 0 Bifidobacterium angulatum 3894 1 0 28025 species Bifidobacterium animalis 4193 1 0 1685 species 1 Bifidobacterium breve 31105 1681 species 0 1 Bifidobacterium bifidum 36421 2889 Bifidobacterium choerinum 1 0 species 35760 3376 Bifidobacterium dentium 1 species 1689 0 1 Bifidobacterium asteroides 1914 1684 species 0 216816 species 0 1 Bifidobacterium longum 63108 1 Bifidobacterium pseudolongum 4111 1694 species 0 2 Parascardovia 1817 0 1 2 196082 genus Parascardovia denticolens 1815 1 0 78258 species 0 1 2701 1 genus Gardnerella 1423 2 0 species 2702 1422 Gardnerella vaginalis 1 Catenulisporales 3788 4 414714 28 order 0 1 0 1 55 414877 family 3 Catenulisporaceae 3760 genus 42 414878 1 0 2 3705 Catenulispora 3663 Catenulispora acidiphila 1 species 304895 0 4 Glycomycetales 2423 0 1 11 85014 order 3 Glycomycetaceae 2412 70 85034 family 0 1 2 Stackebrandtia 2342 283810 33 genus 0 1 species 283811 0 2309 Stackebrandtia nassauensis 1 162 204308 Corynebacteriales order 1747 85007 1 0 1 0 family 1762 206 56 71984 Mycobacteriaceae 0 genus 670516 6089 5 0 1520670 species Mycobacterium stephanolepidis 872 1 Mycobacterium saopaulense 1136 1 0 1578165 species 0 83262 species 1 Mycobacterium immunogenum 984 0 1774 species Mycobacterium chelonae 915 1 1 2182 Mycobacterium abscessus 0 species 36809 0 1073531 genus 2606 2 Mycobacterium sinense 1442 1 0 875328 species species 1788 0 1164 Mycobacterium terrae 1 1 718 697025 genus 0 718 Hoyosella subflava 1 species 639313 0 21325 13 0 genus 1866885 1 1985 Mycobacterium aurum species 1791 0 0 134601 species Mycobacterium goodii 1831 1 species 1766 0 1 1409 Mycobacterium fortuitum species 1772 0 1864 Mycobacterium smegmatis 1 1 1609 Mycobacterium chubuense 0 species 1800 0 36814 species 1 Mycobacterium rhodesiae 1367 0 species 110539 1603 Mycobacterium vanbaalenii 1 1 Mycobacterium thermoresistibile 1822 1797 species 0 Mycobacterium gilvum 1671 1 1804 species 0 0 1795 species Mycobacterium neoaurum 1259 1 0 species 758802 1528 Mycobacterium litorale 1 1 1840 Mycobacterium vaccae 0 species 1810 1 Mycobacterium phlei 1537 0 1771 species 0 1 3296 1763 genus Mycobacterium 41040 34 1 1314 2249310 species group 0 1 1314 Mycobacterium shigaense species 722731 0 1809 species 0 Mycobacterium ulcerans 1334 1 1 351 Mycobacterium leprae species 1769 0 4 2560 0 species group 77643 species 78331 0 1 643 Mycobacterium canettii 3 1917 Mycobacterium tuberculosis species 695 1773 1 0 1 605 Mycobacterium africanum biotype 33894 0 1765 biotype 0 1 Mycobacterium bovis 617 species 29311 0 1 728 Mycobacterium haemophilum species 1768 0 1657 Mycobacterium kansasii 1 0 261524 species 1 Mycobacterium liflandii 1178 1 1900 Mycobacterium dioxanotrophicus species 482462 0 17586 13 0 no rank 2642494 1 Mycobacterium sp. djl-10 1819 0 1879023 species 1 Mycobacterium sp. JLS 1255 164757 species 0 1470 Mycobacterium sp. WY10 1 0 species 1920667 Mycobacterium sp. VKM Ac-1817D 1407 1 0 1273687 species Mycobacterium sp. YC-RL4 1703 1 0 1682113 species 1306 Mycobacterium sp. KMS 1 0 species 189918 1 Mycobacterium sp. QIA-37 944 1561223 species 0 Mycobacterium sp. NRRL B-3805 1259 1 1570328 species 0 1 1473 Mycobacterium sp. JS623 0 species 212767 164756 species 0 Mycobacterium sp. MCS 1245 1 species 1545728 0 1412 Mycobacterium sp. EPa45 1 369 Mycobacterium sp. MOTT36Y 1 species 1168287 0 1 1924 Mycobacterium sp. PYR15 species 2051552 0 8 7670 0 120793 species group Mycobacterium marseillense 891 1 701042 species 0 2130 Mycobacterium intracellulare 4 species 1767 516 1 0 Mycobacterium indicus pranii 340 1 35617 subspecies 0 1 Mycobacterium chimaera 896 0 222805 subspecies Mycobacterium yongonense 378 1 0 1203599 subspecies 1 Mycobacterium colombiense 1675 339268 species 0 Mycobacterium paraintracellulare 333 1 0 1138383 species 1 2641 Mycobacterium avium species 1764 0 0 species 1781 1 1466 Mycobacterium marinum 1 0 family 316606 9 3 1063 Segniliparaceae Segniliparus 1054 2 0 1 13 286801 genus Segniliparus rotundus 1041 1 286802 species 0 0 1 85029 13 family Dietziaceae 2610 4 1 0 genus 54 37914 2597 Dietzia 3 0 499555 species Dietzia timorensis 1320 1 1 1223 2617939 no rank 0 712270 species 0 Dietzia sp. oral taxon 368 1223 1 0 1 9 85028 family Tsukamurellaceae 2923 4 0 1 2060 93 genus Tsukamurella 2914 3 0 species 57704 1 1772 Tsukamurella tyrosinosolvens 0 species 2061 1049 Tsukamurella paurometabola 1 64212 Corynebacteriaceae 52 family 1653 426 1 0 51 Corynebacterium 63786 0 1 1716 1917 genus 0 187491 species Corynebacterium glaucum 1241 1 Corynebacterium kutscheri 490 1 35755 species 0 1 1062 Corynebacterium callunae 0 species 1721 1 2320 Corynebacterium frankenforstense 0 species 1230998 0 species 349751 1 1842 Corynebacterium marinum Corynebacterium flavescens 774 1 0 28028 species Corynebacterium cystitidis 1005 1 35757 species 0 1 Corynebacterium halotolerans 2088 0 225326 species Corynebacterium stationis 662 1 0 1705 species species 38289 0 1 2317 Corynebacterium jeikeium 0 161896 species Corynebacterium camporealensis 1040 1 0 species 169292 1497 Corynebacterium aurimucosum 1 0 191610 species Corynebacterium atypicum 903 1 1092 Corynebacterium singulare 1 species 161899 0 0 species 1408191 976 Corynebacterium deserti 1 0 species 1404244 1 1353 Corynebacterium glyciniphilum 0 152794 species 1 Corynebacterium efficiens 1714 0 species 1697 1 782 Corynebacterium ammoniagenes 1502 Corynebacterium imitans 1 species 156978 0 Corynebacterium urealyticum 1222 1 0 43771 species 1 Corynebacterium mustelae 593 0 571915 species 0 146827 species Corynebacterium simulans 1693 1 0 species 108486 1 1836 Corynebacterium falsenii 1 Corynebacterium vitaeruminis 2530 38305 species 0 Corynebacterium sphenisci 2126 1 191493 species 0 919 Corynebacterium diphtheriae 1 species 1717 0 Corynebacterium pseudotuberculosis 678 1 1719 species 0 Corynebacterium casei 750 1 0 160386 species 161879 species 0 Corynebacterium kroppenstedtii 383 1 136857 species 0 Corynebacterium testudinoris 1019 1 1584 Corynebacterium humireducens 1 species 1223514 0 1 738 [Brevibacterium] flavum species 92706 0 941 Corynebacterium phocae 1 species 161895 0 no rank 2624378 0 1705 2 0 1487956 species 1 Corynebacterium sp. ATCC 6931 771 species 702967 0 1 934 Corynebacterium sp. NML98-0116 Corynebacterium variabile 1517 1 1727 species 0 1 893 Corynebacterium ulcerans species 65058 0 species 43770 0 1 2394 Corynebacterium striatum 1072256 species 0 Corynebacterium uterequi 1449 1 42817 species 0 1 Corynebacterium argentoratense 875 1480 Corynebacterium doosanense 1 species 1121358 0 species 258224 0 1 1068 Corynebacterium resistens 0 1050174 species Corynebacterium epidermidicanis 830 1 species 1718 0 1664 Corynebacterium glutamicum 1 Corynebacterium crudilactis 665 1 1652495 species 0 1 Corynebacterium terpenotabidum 772 89154 species 0 1 1227 Corynebacterium ureicelerivorans species 401472 0 0 species 203263 1158 Corynebacterium aquilae 1 species 575200 0 1 1335 Corynebacterium maris 1165 Corynebacterium lactis 1 0 species 1231000 Gordoniaceae 9527 9 85026 86 family 0 1 9441 Gordonia 8 1 0 genus 2053 263 Gordonia iterans 1397 1 0 1004901 species 1 Gordonia phthalatica 1085 1136941 species 0 1 Gordonia polyisoprenivorans 1312 0 84595 species 0 species 2054 1094 Gordonia bronchialis 1 0 2055 species Gordonia terrae 1333 1 2957 2 0 no rank 2657482 Gordonia sp. KTR9 1602 1 337191 species 0 1 Gordonia sp. YC-JH1 1355 0 2059875 species 2 691 0 no rank 697024 691 Lawsonella 2 1 0 genus 1847725 1 0 species 1528099 690 Lawsonella clevelandensis 1 family 358 85025 1 0 31 49551 Nocardiaceae genus 1206 1827 1 0 23 30454 Rhodococcus 979 Rhodococcus qingshengii 1 species 334542 0 1 Rhodococcus opacus 3747 37919 species 0 species 1830 0 1681 Rhodococcus ruber 1 1829 species 0 1 Rhodococcus rhodochrous 1296 0 192944 no rank 12 12793 1 1074 Rhodococcus sp. p52 0 species 935199 1807790 species 0 1 Rhodococcus sp. BH4 705 Rhodococcus sp. YL-1 885 1 1045808 species 0 1 Rhodococcus sp. PBTS 1 970 1653478 species 0 1 Rhodococcus sp. MTM3W5.2 1543 1805827 species 0 862 Rhodococcus sp. 008 1 species 1723645 0 884 Rhodococcus sp. H-CA8f 1 0 species 1727214 0 1570939 species 1 Rhodococcus sp. 2G 1002 1564114 species 0 Rhodococcus sp. B7740 1176 1 1 1850 Rhodococcus sp. WB1 0 species 1033922 1 725 Rhodococcus sp. WMMA185 0 species 679318 1117 Rhodococcus sp. PBTS 2 1 species 1653479 0 0 43767 species 1 Rhodococcus hoagii 1434 1 1553 Rhodococcus jostii species 132919 0 1 1914 Rhodococcus aetherivorans 0 species 191292 0 103816 species 1 Rhodococcus pyridinivorans 1275 Rhodococcus fascians 1182 1 0 1828 species species 1833 0 1394 Rhodococcus erythropolis 1 0 1 400 1817 genus Nocardia 18739 7 37329 species 0 1 Nocardia farcinica 2921 1 Nocardia nova 1751 37330 species 0 species 455432 0 2598 Nocardia terpenica 1 1 4126 Nocardia cyriacigeorgica 0 species 135487 1 Nocardia seriolae 2780 37332 species 0 0 37326 species Nocardia brasiliensis 4163 1 4 Acidothermales 677 0 1 1643683 2 order 1 0 family 7 85032 3 675 Acidothermaceae 2 Acidothermus 668 0 1 28048 3 genus 1 665 Acidothermus cellulolyticus 0 species 28049 90 85008 order 0 1 Micromonosporales 32105 20 19 Micromonosporaceae 32015 504 28056 family 0 1 0 genus 84593 3 Verrucosispora 1 1873 163 genus 0 1 Micromonospora 7242 4 2617518 no rank 0 2568 1 648999 species 0 1 Micromonospora sp. L5 2568 1003110 species 0 Verrucosispora maris 2142 1 0 species 47850 1 2369 Micromonospora aurantiaca 1 0 genus 130 673534 4 7516 Plantactinospora 0 no rank 2631981 7386 3 2108470 species 0 Plantactinospora sp. BC1 2534 1 1 2244 Plantactinospora sp. BB1 species 2071627 0 0 2024580 species Plantactinospora sp. KBS50 2608 1 Actinoplanes 13208 6 0 1 1865 249 genus 196914 species 0 Actinoplanes friuliensis 2626 1 1 2532 Actinoplanes missouriensis species 1866 0 2626549 no rank 0 3 7801 1 Actinoplanes sp. SE50 2411 2033844 species 0 1 Actinoplanes sp. SE50/110 2411 134676 species 0 0 649831 species 1 Actinoplanes sp. N902-109 2979 3 Salinispora 3542 0 1 57 168694 genus 168697 species 0 Salinispora arenicola 1835 1 0 168695 species Salinispora tropica 1650 1 order 622452 10 1 0 2067 Kineosporiales 4 2057 Kineosporiaceae 3 family 50 83778 1 0 0 1 16 33981 genus Kineococcus 2007 2 131568 species 0 1 Kineococcus radiotolerans 1991 146 158203 Micrococcales order 1451 85006 1 0 family 30 145360 1 0 2045 Sanguibacteraceae 3 2 Sanguibacter 2015 0 1 71 60919 genus 60920 species 0 Sanguibacter keddieii 1944 1 47123 Microbacteriaceae 48 family 595 85023 1 0 5929 Clavibacter 6 genus 1573 332 1 0 Clavibacter michiganensis 5597 5 0 1 28447 1100 species 33014 subspecies 0 1 Clavibacter insidiosus 1039 Clavibacter nebraskensis 1059 1 31963 subspecies 0 1 1360 Clavibacter sepedonicus 0 subspecies 31964 1 1039 Clavibacter capsici subspecies 1874630 0 3 3630 Cryobacterium genus 76 69578 1 0 1 1778 Cryobacterium arcticum 0 species 670052 0 no rank 2649013 1 1776 species 1978566 0 1 1776 Cryobacterium sp. LW097 1705353 genus 0 1 329 species 708131 0 329 Aurantimicrobium minutum 1 0 1655488 no rank 1211 3 3 1211 0 1655489 clade Rhodoluna 1211 3 0 1 529883 4 genus 0 species 529884 599 Rhodoluna lacicola 1 608 Candidatus Rhodoluna planktonica 1 0 species 535712 0 1759331 genus 1 1635 1 Cnuibacter physcomitrellae 1635 0 1619308 species Microterricola 1645 2 0 1 518733 10 genus 0 species 412690 1635 Microterricola viridarii 1 18417 Microbacterium 14 1 0 genus 372 33882 0 300019 species Microbacterium paludicola 1463 1 84292 species 0 Microbacterium chocolatum 900 1 Microbacterium aurum 1730 1 36805 species 0 0 species 2033 1098 Microbacterium testaceum 1 1786 Microbacterium hominis 1 0 species 162426 no rank 2609290 0 8 11068 1916917 species 0 Microbacterium sp. 1.5R 1235 1 0 2103230 species 1 Microbacterium sp. str. 'China' 1677 0 species 1714373 1 1607 Microbacterium sp. No. 7 1 1615 Microbacterium sp. PAMC 28756 0 species 1795053 0 species 1938334 1146 Microbacterium sp. TPU 3598 1 species 367477 0 1 1196 Microbacterium sp. XT11 1 Microbacterium sp. CGR1 1072 0 1696072 species 1906742 species 0 Microbacterium sp. BH-3-3-3 1520 1 0 1 337004 5 genus Microcella 956 2 951 Microcella alkaliphila 1 0 species 279828 1466 Rathayibacter 3 genus 7 33886 1 0 0 33888 species Rathayibacter tritici 1033 1 0 145458 species 1 Rathayibacter toxicus 426 2 3521 Leifsonia genus 110932 67 1 0 1 Leifsonia xyli 3454 0 1575 species 4 Curtobacterium 4184 2034 99 genus 0 1 no rank 257496 0 2759 2 1399 Curtobacterium sp. MR_MD2014 1 species 1561023 0 1360 Curtobacterium sp. BH-2-1-1 1 species 1905847 0 species 69373 0 1 1326 Curtobacterium pusillum 0 1 1434032 5 genus 2 Pontimonas 248 species 1159327 0 1 243 Pontimonas salivibrio 1 0 genus 33877 6 1896 Agromyces 2 species 453304 0 1 1890 Agromyces aureus 1 0 genus 1 447237 1461 Frondihabitans 2 0 no rank 2626248 1 1460 species 1795630 0 1 1460 Frondihabitans sp. PAMC 28766 7 4794 Dermacoccaceae 1 0 family 40 145357 1669 Kytococcus 2 genus 21 57499 1 0 0 1276 species Kytococcus sedentarius 1648 1 genus 20 57495 1 0 2 1479 Dermacoccus 0 1274 species 1 Dermacoccus nishinomiyaensis 1459 2 1606 Luteipulveratus 1 0 genus 11 745364 0 species 571913 1 1595 Luteipulveratus mongoliensis 0 1 2777 1268 family Micrococcaceae 63204 40 1007 1 2078575 genus 0 Arthrobacter sp. IHBB 11108 1007 1 1618207 species 0 4 4982 Kocuria 1 0 genus 57493 96 0 species 72000 1714 Kocuria rhizophila 1 Kocuria palustris 1364 1 71999 species 0 0 446860 species 1 Kocuria flava 1808 2 540 Renibacterium 1 0 genus 3 1645 537 Renibacterium salmoninarum 1 0 species 1646 5783 Pseudarthrobacter 4 genus 1742993 61 1 0 Pseudarthrobacter phenanthrenivorans 2084 1 0 361575 species 0 species 121292 1 1821 Pseudarthrobacter sulfonivorans 1 1817 Pseudarthrobacter chlorophenolicus 0 species 85085 1 0 genus 596707 35 2 1666 Sinomonas 1631 Sinomonas atrocyanea 1 species 37927 0 11 1868332 genus 0 1 Neomicrococcus 1169 2 1 1158 Neomicrococcus aestuarii 0 species 556325 Paenarthrobacter 1178 2 0 1 1742992 5 genus 0 43663 species Paenarthrobacter aurescens 1173 1 15 Arthrobacter 25132 679 1663 genus 0 1 0 37928 species Arthrobacter crystallopoietes 1928 1 species 656366 0 1 2604 Arthrobacter alpinus 12 19921 0 235627 no rank Arthrobacter sp. YC-RL1 2362 1 0 1652545 species 1880 Arthrobacter sp. ERGS1:01 1 species 1704044 0 0 1494608 species Arthrobacter sp. PAMC 25486 1385 1 2349 Arthrobacter sp. LS16 1 0 species 1690248 1990 Arthrobacter sp. QXT-31 1 0 species 1357915 0 species 290399 1635 Arthrobacter sp. FB24 1 1118963 species 0 Arthrobacter sp. Rue61a 1149 1 Arthrobacter sp. PGP41 1591 1 0 2079227 species 1176 Arthrobacter sp. ATCC 21022 1 species 1771959 0 1849032 species 0 1 Arthrobacter sp. U41 1801 1 Arthrobacter sp. YN 1488 0 2020486 species species 1806905 0 1115 Arthrobacter sp. ZXY-2 1 1 0 genus 32207 5 14777 Rothia 3 14004 Rothia mucilaginosa 1 species 43675 0 Rothia dentocariosa 768 1 0 2047 species Glutamicibacter 2333 2 9 1742989 genus 0 1 2324 Glutamicibacter arilaitensis 1 0 species 256701 1269 38 genus 0 1 Micrococcus 1860 2 1 1822 Micrococcus luteus species 1270 0 170 85017 family 0 1 Promicromonosporaceae 9162 9 1 0 genus 46 186188 2 2202 Xylanimonas Xylanimonas cellulosilytica 2156 1 0 186189 species Cellulosimicrobium 3056 3 0 1 157920 41 genus 1486 1 0 2624466 no rank 1 1486 Cellulosimicrobium sp. TH-20 0 species 1980001 Cellulosimicrobium cellulans 1529 1 1710 species 0 Isoptericola 3734 3 254250 64 genus 0 1 0 139208 species 1 Isoptericola variabilis 1651 Isoptericola dokdonensis 2019 1 372663 species 0 0 1 115 85020 family 11 Dermabacteraceae 12052 2 Dermabacter 894 36739 1 genus 0 1 1630135 species 0 1 Dermabacter vaginalis 893 0 1 43668 258 genus 6 Brachybacterium 10273 2017485 species 0 1 Brachybacterium sp. VR2415 1623 Brachybacterium sp. VM2412 2142 1 2017484 species 0 species 1331682 0 1 1941 Brachybacterium ginsengisoli species 43669 0 2228 Brachybacterium faecium 1 1 2081 2623841 no rank 0 1903186 species 0 1 Brachybacterium sp. P6-10-X1 2081 genus 472568 2 1 0 770 Devriesea 2 species 472569 0 1 768 Devriesea agamarum 0 1 5 85019 family Brevibacteriaceae 2803 3 2 2798 Brevibacterium 1 0 genus 1696 48 1703 species 0 1 Brevibacterium linens 2750 6 6641 Cellulomonadaceae 1 0 family 85016 45 genus 1707 180 1 0 5 6596 Cellulomonas 0 1708 species 1 Cellulomonas fimi 1836 0 1711 species Cellulomonas flavigena 1893 1 2620175 no rank 0 1 1306 1 Cellulomonas sp. PSBB021 1306 2003551 species 0 species 11 0 1381 Cellulomonas gilvus 1 family 62 85021 1 0 9 6363 Intrasporangiaceae genus 265976 32 1 0 1726 Serinicoccus 2 0 species 1758689 1 1694 Serinicoccus sp. JLT9 2 Arsenicicoccus 2152 267408 61 genus 0 1 1 2091 0 no rank 2663846 1 Arsenicicoccus sp. oral taxon 190 2091 1658671 species 0 Intrasporangium 1164 2 53357 20 genus 0 1 1144 Intrasporangium calvum 1 species 53358 0 1 0 genus 53457 19 2 1259 Janibacter 0 857417 species Janibacter indicus 1240 1 1 0 family 4 125316 1481 Beutenbergiaceae 3 2 1477 Beutenbergia genus 25 84756 1 0 1452 Beutenbergia cavernae 1 0 species 84757 1 248 no rank 577468 0 248 1 genus 2038 0 1 Tropheryma whipplei 248 0 2039 species 0 85022 family 2 354 2 Jonesia 354 0 1 14 43673 genus species 43674 0 340 Jonesia denitrificans 1 3 482 Dermatophilaceae 1 0 family 85018 1 1 0 genus 1862 1 481 Dermatophilus 2 0 species 1863 1 480 Dermatophilus congolensis 20 Actinomycetales 34339 2037 62 order 0 1 0 1 2049 6051 family 19 Actinomycetaceae 34277 2 Actinotignum 994 1653174 5 genus 0 1 1 989 Actinotignum schaalii species 59505 0 genus 45 1069494 1 0 2 2477 Trueperella 1 2432 Trueperella pyogenes 0 species 1661 3126 Mobiluncus 2 1 0 genus 2050 167 1 2959 Mobiluncus curtisii species 2051 0 3192 1 genus 2529408 0 3192 Actinomyces meyeri 1 0 species 52773 17927 Actinomyces 9 1 0 genus 1654 354 1852377 species 0 1 Actinomyces pacaensis 3982 0 1960083 species Actinomyces gaoshouyii 1420 1 2433 Actinomyces radicidentis 1 species 111015 0 3 6650 0 no rank 2609248 1644 Actinomyces sp. Chiba101 1 species 1851395 0 2702 Actinomyces sp. oral taxon 414 1 species 712122 0 1 2304 Actinomyces sp. oral taxon 897 0 species 2081702 species 1912795 0 1 588 Actinomyces sp. VUL4_3 1 Actinomyces oris 2500 0 544580 species 2 510 Arcanobacterium 1 0 genus 28263 1 1 509 Arcanobacterium haemolyticum species 28264 0 34 Propionibacteriales 40287 0 1 85009 226 order 347 85015 family 0 1 Nocardioidaceae 13558 13 genus 2044 29 1 0 2310 Pimelobacter 2 2281 Pimelobacter simplex 1 0 species 2045 0 1 28 182639 genus 2 Kribbella 2198 0 species 182640 2170 Kribbella flavida 1 Aeromicrobium 1239 2 0 1 32 2040 genus Aeromicrobium erythreum 1207 1 2041 species 0 51 116071 genus 0 1 2 Micropruina 2079 75385 species 0 Micropruina glycogenica 2028 1 5385 Nocardioides 4 1 0 genus 1839 95 0 species 450734 1640 Nocardioides dokdonensis 1 0 species 2045452 1702 Nocardioides sp. 78 1 1 1948 2615069 no rank 0 1948 Nocardioides sp. JS614 1 0 species 196162 31957 390 family 0 1 Propionibacteriaceae 26503 20 1727 Propionimicrobium 2 genus 203133 1 1 0 1 1726 no rank 2633994 0 1871034 species 0 Propionimicrobium sp. Marseille-P3275 1726 1 genus 2801844 0 1 1664 Pseudopropionibacterium propionicum 1664 1 1750 species 0 0 1 1743 91 genus 3 Propionibacterium 5039 1 771 no rank 2608905 0 0 671223 species 1 Propionibacterium sp. oral taxon 193 771 4177 Propionibacterium freudenreichii 1 0 species 1744 genus 60 72763 1 0 8407 Tessaracoccus 5 1610493 species 0 1 Tessaracoccus flavus 1649 1 Tessaracoccus flavescens 1899 0 399497 species 1 2294 0 2635419 no rank 1909732 species 0 Tessaracoccus sp. T2.5-30 2294 1 1 Tessaracoccus aquimaris 2505 1332264 species 0 0 1 18 1912215 genus Acidipropionibacterium 3004 2 1 Acidipropionibacterium acidipropionici 2986 1748 species 0 0 1 29404 46 genus Microlunatus 1649 2 0 species 29405 1 1603 Microlunatus phosphovorus 1 0 genus 32 1912216 4623 Cutibacterium 4 0 species 33010 1 2168 Cutibacterium avidum 1747 species 0 Cutibacterium acnes 1223 1 0 species 33011 1 1200 Cutibacterium granulosum 0 1 130 85012 order 16 Streptosporangiales 22766 0 1 40 2012 family Thermomonosporaceae 4003 3 2 3963 Thermomonospora 1 0 genus 2019 78 Thermomonospora curvata 3885 1 2020 species 0 142 2004 family 0 1 5 Streptosporangiaceae 10092 genus 124 2000 1 0 2 4277 Streptosporangium 0 2001 species Streptosporangium roseum 4153 1 genus 59 83681 1 0 5673 Nonomuraea 2 5614 1 0 2593643 no rank species 1909395 0 5614 Nonomuraea sp. ATCC 55076 1 family 164 83676 1 0 7 8541 Nocardiopsaceae Nocardiopsis 7078 4 0 1 105 2013 genus 0 species 53437 1 1823 Nocardiopsis alba 2322 Nocardiopsis gilva 1 0 species 280236 species 2014 0 2828 Nocardiopsis dassonvillei 1 1 0 genus 13 83677 2 1299 Thermobifida Thermobifida fusca 1286 1 2021 species 0 1 0 order 1 622450 4 1612 Actinopolysporales 21 622451 family 0 1 3 Actinopolysporaceae 1611 genus 1849 47 1 0 2 1590 Actinopolyspora 1543 Actinopolyspora erythraea 1 species 414996 0 order 18 2039638 1 0 12 3299 Candidatus Nanopelagicales 3281 11 2162846 family 0 genus 622681 30 1 0 7 2755 Candidatus Planktophila 0 species 573600 1 283 Candidatus Planktophila limnetica species 1884905 0 1 595 Candidatus Planktophila versatilis 634 Candidatus Planktophila lacus 1 species 1884913 0 1884907 species 0 Candidatus Planktophila vernalis 366 1 0 1884914 species 1 Candidatus Planktophila dulcis 569 0 1884904 species 1 Candidatus Planktophila sulfonica 278 3 2039639 genus 0 1 4 Candidatus Nanopelagicus 526 Candidatus Nanopelagicus limnes 135 1 1884634 species 0 0 1884915 species 1 Candidatus Nanopelagicus hibericus 201 Candidatus Nanopelagicus abundans 187 1 1884916 species 0 class 84992 5 1 0 2472 Acidimicrobiia 7 Acidimicrobiales 2467 6 94 84993 order 0 1 445 Acidimicrobiaceae 3 1 0 family 84994 36 genus 5 53634 1 0 2 409 Acidimicrobium 0 species 53635 1 404 Acidimicrobium ferrooxidans 1928 2 family 2448023 0 15 682522 genus 0 1 2 Ilumatobacter 1928 1913 Ilumatobacter coccineus 1 0 species 467094 0 1752188 no rank 1168 4 1848754 species 0 Actinobacteria bacterium IMCC19121 250 1 1 266 Actinobacteria bacterium IMCC26077 0 species 1848755 0 species 1848255 1 281 Actinobacteria bacterium IMCC25003 1 Actinobacteria bacterium IMCC26103 371 1848756 species 0 1 0 class 23 84995 3130 Rubrobacteria 6 Rubrobacterales 3107 5 0 1 84996 88 order family 84997 48 1 0 4 3019 Rubrobacteraceae Rubrobacter 2971 3 0 1 42255 108 genus 1 958 Rubrobacter radiotolerans species 42256 0 0 species 49319 1 1905 Rubrobacter xylanophilus 3590 Thermoleophilia 5 class 33 1497346 1 0 3557 Solirubrobacterales 4 1 0 order 115 588673 0 1 33 320583 family Conexibacteraceae 3442 3 2 3409 Conexibacter genus 191494 169 1 0 1 Conexibacter woesei 3240 191495 species 0 2 559 0 1859062 no rank 16 262406 genus 0 1 Thermobaculum 559 2 0 166501 species Thermobaculum terrenum 543 1 2 200795 phylum 0 1 47 Chloroflexi 25860 9 5210 Dehalococcoidia class 301297 5 1 0 0 1 27 670486 genus 3 Dehalogenimonas 2180 Dehalogenimonas lykanthroporepellens 960 1 0 552810 species 1193 Dehalogenimonas formicexedens 1 species 1839801 0 1 0 order 1202465 6 3025 Dehalococcoidales 5 family 1202464 25 1 0 4 3019 Dehalococcoidaceae 2 61434 genus 0 1 Dehalococcoides 2994 3 1 2460 Dehalococcoides mccartyi species 61435 0 0 no rank 237581 532 1 Dehalococcoides sp. UCH007 532 1 0 1522671 species 1 0 class 1382928 80 5 4137 Ardenticatenia 4 Ardenticatenales 4057 55 1382929 order 0 1 1382930 48 family 0 1 Ardenticatenaceae 4002 3 3954 Candidatus Promineofilum 2 1 0 genus 36 1988031 0 1806508 species 1 Candidatus Promineofilum breve 3918 475962 30 class 0 1 5 Caldilineae 2273 Caldilineales 2243 4 19 475963 order 0 1 Caldilineaceae 2224 3 0 1 16 475964 family 2 2208 Caldilinea 1 0 genus 43 233191 133453 species 0 Caldilinea aerophila 2165 1 Anaerolineae 5303 7 20 292625 class 0 1 6 Anaerolineales 5283 292629 20 order 0 1 family 27 292628 1 0 5263 Anaerolineaceae 5 945 1 0 genus 2019482 Brevefilum fermentans 945 1 1986204 species 0 2 1828 Anaerolinea genus 1 233189 1 0 1 Anaerolinea thermophila 1827 167964 species 0 0 1324991 no rank 1 2463 species 1889813 0 2463 Anaerolineaceae bacterium oral taxon 439 1 6101 Chloroflexia 11 class 13 32061 1 0 1 0 order 49 32064 6088 Chloroflexales 10 3150 4 suborder 1508595 0 4 Roseiflexaceae 3150 1508635 9 family 0 1 0 1 120961 10 genus 3 Roseiflexus 3141 1599 1 2609473 no rank 0 357808 species 0 Roseiflexus sp. RS-1 1599 1 0 120962 species Roseiflexus castenholzii 1532 1 2889 5 suborder 1508594 0 2889 Chloroflexaceae 5 1 0 family 2 1106 4 2887 Chloroflexus genus 29 1107 1 0 0 152260 species 1 Chloroflexus aggregans 673 1 0 species 1108 1094 2 2185 Chloroflexus aurantiacus 1 Chloroflexus sp. Y-400-fl 1091 0 480224 strain 0 1 66 189775 class Thermomicrobia 2834 9 4 Thermomicrobiales 800 0 1 7 189776 order Thermomicrobiaceae 793 3 189777 3 family 0 1 genus 499 1 1 0 790 Thermomicrobium 2 789 Thermomicrobium roseum 1 0 species 500 0 subclass 85000 1968 4 0 1 85001 85 order Sphaerobacterales 1968 4 0 suborder 255728 1883 3 Sphaerobacteraceae 1883 3 25 85002 family 0 1 2 1858 Sphaerobacter 1 0 genus 18 2056 Sphaerobacter thermophilus 1840 1 2057 species 0 phylum 2 544448 1 0 102 35888 Tenericutes 32459 Mollicutes 97 class 55 31969 1 0 13 2085 order 0 1 Mycoplasmatales 12563 44 1 0 family 2092 50 12550 Mycoplasmataceae 43 3 440 Ureaplasma genus 2 2129 1 0 2130 species 0 Ureaplasma urealyticum 185 1 1 Ureaplasma parvum 253 0 134821 species 12 3764 0 2767358 genus Mycoplasma bovigenitalium 273 1 0 2112 species 0 species 2115 1 281 Mycoplasma fermentans 0 2113 species 1 Mycoplasma californicum 169 350 Mycoplasma cynos 1 species 171284 0 2110 species 0 1 Mycoplasma agalactiae 286 1 567 Mycoplasma bovis 0 species 28903 0 species 48003 1 257 Mycoplasma pullorum 0 2107 species 1 Mycoplasma pulmonis 267 0 species 2094 1 213 Mycoplasma arginini species 29555 0 412 Mycoplasma canis 1 1 Mycoplasma bovirhinis 350 0 29553 species Mycoplasma synoviae 339 1 2109 species 0 Mycoplasma 8296 27 0 1 205 2093 genus 50 Mycoplasma genitalium 1 0 species 2097 species 2128 0 1 222 Mycoplasma flocculare 1 61 Mycoplasma haemocanis 0 species 136241 131 Mycoplasma parvum 1 0 species 984991 1 Mycoplasma gallisepticum 416 2096 species 0 2104 species 0 1 Mycoplasma pneumoniae 142 Mycoplasma mobile 309 1 0 2118 species Mycoplasma arthritidis 310 1 2111 species 0 species 29501 0 1 64 Mycoplasma haemofelis 0 species 50052 357 Mycoplasma crocodyli 1 Mycoplasma ovis 74 1 0 171632 species 1 332 2683645 no rank 0 0 1749074 species Mycoplasma sp. (ex Biomphalaria glabrata) 332 1 2098 species 0 Mycoplasma hominis 811 1 Mycoplasma yeatsii 444 1 51365 species 0 Mycoplasma dispar 452 1 0 86660 species 0 species group 656088 2012 3 0 species 2095 548 Mycoplasma capricolum 1 0 2102 species 1 Mycoplasma mycoides 973 0 2105 species Mycoplasma leachii 491 1 species 45362 0 1 164 Mycoplasma bovoculi Mycoplasma wenyonii 71 1 0 65123 species 323 Mycoplasma penetrans 1 0 species 28227 336 Mycoplasma hyorhinis 1 0 species 2100 29554 species 0 1 Mycoplasma canadense 520 species 2099 0 202 Mycoplasma hyopneumoniae 1 species 57372 0 1 56 Mycoplasma suis 1 232 Mycoplasma putrefaciens species 2123 0 186329 32 order 0 1 13 Acholeplasmatales 5509 family 2146 46 1 0 5477 Acholeplasmataceae 12 genus 50 2147 1 0 5 4152 Acholeplasma 1 Acholeplasma palmae 1301 38986 species 0 0 species 61635 759 Acholeplasma brassicae 1 species 35623 0 1020 Acholeplasma oculi 1 0 2148 species Acholeplasma laidlawii 1022 1 1 0 genus 33926 44 1279 Candidatus Phytoplasma 6 1 252 species group 85632 0 252 Candidatus Phytoplasma australiense 1 species 59748 0 3 756 0 species group 85620 0 species 229545 250 Aster yellows witches'-broom phytoplasma 1 0 100379 species Onion yellows phytoplasma 250 1 species 202462 0 1 256 Maize bushy stunt phytoplasma 227 1 85630 species group 0 0 37692 species Candidatus Phytoplasma mali 227 1 order 186328 50 1 0 39 14332 Entomoplasmatales 24 9932 Spiroplasmataceae 1 0 family 95 2131 genus 2132 238 1 0 23 9837 Spiroplasma species 216933 0 356 Spiroplasma chrysopicola 1 2136 species 0 1 Spiroplasma monobiae 360 species 2145 0 1 975 Spiroplasma taiwanense 1 490 Spiroplasma helicoides 0 species 216938 0 216942 species 1 Spiroplasma litorale 1194 0 species 216944 462 Spiroplasma sabaudiense 1 species 216946 0 1 435 Spiroplasma turonicum 1 332 Spiroplasma atrichopogonis 0 species 1114980 Spiroplasma mirum 331 1 2144 species 0 1 346 Spiroplasma corruscae 0 species 216934 0 species 315358 1 254 Spiroplasma eriocheiris 0 species 2139 1 371 Spiroplasma clarkii Spiroplasma cantharicola 328 1 362837 species 0 1 351 Spiroplasma citri 0 species 2133 species 216935 0 1 398 Spiroplasma culicicola 1 366 Spiroplasma apis species 2137 0 1 Spiroplasma syrphidicola 430 216945 species 0 Spiroplasma diminutum 487 1 0 216936 species 424 Spiroplasma floricola 1 0 species 216937 2637901 no rank 0 550 2 1 Spiroplasma sp. NBRC 100390 275 1914410 species 0 0 1898044 species 1 Spiroplasma sp. TU-14 275 0 47834 species Spiroplasma kunkelii 359 1 1 0 family 2 33925 14 4350 Entomoplasmataceae 1 0 genus 53 46239 8 3161 Mesoplasma 1 290 Mesoplasma coleopterae species 324078 0 803 Mesoplasma florum 1 0 species 2151 species 216427 0 291 Mesoplasma chauliocola 1 0 species 138853 1 418 Mesoplasma lactucae Mesoplasma entomophilum 206 1 0 2149 species 1 Mesoplasma syrphidae 328 225999 species 0 1 772 Mesoplasma tabanidae 0 species 219745 genus 46238 26 1 0 1187 Entomoplasma 5 0 215578 species Entomoplasma somnilux 324 1 214888 species 0 Entomoplasma luminosum 288 1 1 204 Entomoplasma freundtii 0 species 74700 345 Entomoplasma melaleucae 1 0 species 81459 713063 no rank 0 2583 2 1239 Tenericutes bacterium MO-XQ 1 0 species 1911684 0 1911683 species Tenericutes bacterium MZ-XQ 1344 1 844 2 2799557 no rank 0 1 1912503 genus 0 1 Candidatus Izimaplasma 844 2 2624196 no rank 0 843 1 0 1541959 species Candidatus Izimaplasma sp. HR1 843 1 5 1229 0 67819 phylum 0 1 1 1663419 class Fimbriimonadia 1229 5 1 0 order 3 1663425 4 1228 Fimbriimonadales 8 1663426 family 0 1 Fimbriimonadaceae 1225 3 genus 1 1005038 1 0 1217 Fimbriimonas 2 0 species 1005039 1 1216 Fimbriimonas ginsengisoli 200940 phylum 0 1530 7 class 67799 5 1 0 1530 Thermodesulfobacteria 7 0 order 188710 6 1525 6 1525 Thermodesulfobacteriaceae family 188711 7 1 0 2 706 genus 1740 0 486 Thermodesulfobacterium geofontis 1 species 1295609 0 species 1741 0 220 Thermodesulfobacterium commune 1 332 1 444090 genus 0 1653476 species 0 1 Caldimicrobium thiodismutans 332 2 480 Thermodesulfatator 1 0 genus 4 241192 476 Thermodesulfatator indicus 1 0 species 171695 Acidobacteria 14660 21 0 1 57723 2 phylum 13634 Acidobacteriia 17 class 103 204432 1 0 1 0 order 204433 102 12 10613 Acidobacteriales 1 0 family 204434 145 10511 Acidobacteriaceae 11 3259 Granulicella 3 genus 53 940557 1 0 0 940614 species 1 Granulicella mallensis 1642 Granulicella tundricola 1564 1 0 940615 species 2 1843 Acidobacterium genus 11 33973 1 0 1 Acidobacterium capsulatum 1832 0 33075 species genus 21 392733 1 0 3664 Terriglobus 3 0 392734 species Terriglobus roseus 2020 1 0 species 870903 1 1623 Terriglobus saanensis genus 658061 24 1 0 2 1600 Candidatus Koribacter 1 Candidatus Koribacter versatilis 1576 0 658062 species Solibacterales 2918 4 63 332160 order 0 1 1 0 family 332161 25 3 2855 Solibacteraceae 332162 51 genus 0 1 2 Candidatus Solibacter 2830 species 332163 0 1 2779 Candidatus Solibacter usitatus 1024 Blastocatellia 3 1 0 class 8 1562566 0 1 458032 10 genus Chloracidobacterium 1016 2 species 458033 0 1 1006 Chloracidobacterium thermophilum 0 phylum 200783 27 6926 Aquificae 6926 27 0 1 14 187857 class 2070 Desulfurobacteriales 5 1 0 order 9 1485951 0 1 3 558314 family 4 Desulfurobacteriaceae 2061 genus 171868 2 1 0 671 Thermovibrio 2 0 228745 species Thermovibrio ammonificans 669 1 0 genus 64159 1 1387 1 1387 Desulfurobacterium thermolithotrophum species 64160 0 order 32069 15 1 0 21 4842 Aquificales 391 2 0 90150 no rank 0 1 2 412592 genus 2 Thermosulfidibacter 391 Thermosulfidibacter takaii 389 1 412593 species 0 family 64898 24 1 0 13 2441 Aquificaceae 0 1 2713 1 genus 2 Aquifex 261 0 species 63363 1 260 Aquifex aeolicus genus 75905 0 2 463 1 218 Thermocrinis albus 0 species 136094 75906 species 0 Thermocrinis ruber 245 1 2 434 Hydrogenobacter 1 0 genus 1 939 940 species 0 Hydrogenobacter thermophilus 433 1 168657 16 genus 0 1 6 Hydrogenobaculum 1259 1243 5 0 no rank 2622382 1 Hydrogenobaculum sp. 3684 256 0 547143 species 380749 species 0 1 Hydrogenobaculum sp. Y04AAS1 211 0 547146 species Hydrogenobaculum sp. SN 264 1 1 Hydrogenobaculum sp. SHO 256 547145 species 0 0 547144 species Hydrogenobaculum sp. HO 256 1 5 Hydrogenothermaceae 1995 0 1 224027 8 family 2 1431 genus 212790 0 1 513 Sulfurihydrogenibium azorense species 309806 0 918 1 0 no rank 2619248 Sulfurihydrogenibium sp. YO3AOP1 918 1 0 436114 species 2 Persephonella 556 0 1 182899 4 genus 1 552 Persephonella marina 0 species 309805 clade 2498710 0 602 5 5 602 0 67814 phylum Caldisericia 602 5 10 693071 class 0 1 4 Caldisericales 592 693072 1 order 0 1 family 693073 4 1 0 591 Caldisericaceae 3 genus 693074 27 1 0 587 Caldisericum 2 560 Caldisericum exile 1 species 693075 0 6743 13 40117 phylum 0 6743 Nitrospira 13 class 203693 31 1 0 6712 Nitrospirales 12 1 0 order 94 189778 family 42 189779 1 0 6618 Nitrospiraceae 11 4 Leptospirillum 1483 11 179 genus 0 1 1 455 0 species group 261385 0 1660083 species Leptospirillum sp. Group II 'CF-1' 455 1 0 species group 655606 461 1 1 Leptospirillum ferrooxidans 461 0 180 species 556 1 species group 261386 0 556 Leptospirillum ferriphilum 1 species 178606 0 522 1 0 28261 genus species 28262 0 1 522 Thermodesulfovibrio yellowstonii 5 Nitrospira 4571 0 1 41 1234 genus 1 Candidatus Nitrospira inopinata 1165 1715989 species 0 1 857 Nitrospira defluvii 0 species 330214 1 978 Nitrospira japonica 0 species 1325564 1 1530 Nitrospira moscoviensis 0 species 42253 1783257 clade 0 62396 95 203682 18 phylum 0 1 38 Planctomycetes 22779 1 0 class 20 666505 7 3854 Phycisphaerae 0 2483366 order 2 1771 2 1771 0 family 2483367 0 2483368 genus 2 1771 815 Phycisphaerae bacterium L21-RPul-D3 1 0 species 1940790 1 Phycisphaerae bacterium ST-PulAB-D4 956 1941349 species 0 Phycisphaerales 2063 4 49 666506 order 0 1 666507 20 family 0 1 3 Phycisphaeraceae 2014 1 0 genus 666508 6 2 1994 Phycisphaera 1 1988 Phycisphaera mikurensis species 547188 0 26 18032 Planctomycetia 1 0 class 131 203683 0 order 2691356 4994 7 Isosphaeraceae 4994 7 0 1 1763524 62 family 2 Paludisphaera 2411 13 1763521 genus 0 1 species 1387353 0 1 2398 Paludisphaera borealis 0 1 5 466152 genus 2 Singulisphaera 1547 1542 Singulisphaera acidiphila 1 0 species 466153 1 0 genus 8 127 974 Isosphaera 2 128 species 0 1 Isosphaera pallida 966 order 2691355 0 1873 3 1 0 family 2 1914233 3 1873 Gemmataceae 2 1871 Gemmata 1 0 genus 5 113 1866 1 0 no rank 2622970 0 species 1630693 1 1866 Gemmata sp. SH-PL17 2691354 order 0 5 2218 family 2691357 0 4 1555 0 1 123 2 genus Pirellula 569 2 567 Pirellula staleyi 1 species 125 0 0 1 2 265488 genus 2 Rhodopirellula 986 1 Rhodopirellula baltica 984 0 265606 species 663 1 2691358 family 0 1676125 genus 0 1 663 0 species 1331910 1 663 Thermogutta terrifontis Planctomycetales 8816 10 0 1 112 257 order 24 126 family 0 1 Planctomycetaceae 8559 9 3 Planctomyces 5053 55 118 genus 0 1 4998 2 0 2648843 no rank 0 species 1632864 2055 Planctomyces sp. SH-PL14 1 0 species 1636152 1 2943 Planctomyces sp. SH-PL62 1936111 4 genus 0 1 Fuerstia 1753 2 1749 Fuerstia marisgermanicae 1 species 1891926 0 907 Rubinisphaera 2 genus 1 1649490 1 0 0 species 119 906 Rubinisphaera brasiliensis 1 1649480 genus 0 1 822 species 120 0 822 Planctopirus limnophila 1 875 4 0 2517206 class 875 Candidatus Brocadiales 4 order 1127829 6 1 0 Candidatus Brocadiaceae 869 3 2 1127830 family 0 1 1 0 genus 380738 8 867 Candidatus Kuenenia 2 Candidatus Kuenenia stuttgartiensis 859 1 0 174633 species phylum 204428 0 3021 22 0 1 10 204429 class Chlamydiia 3021 22 3 1963360 order 0 1 8 Parachlamydiales 1314 family 92712 0 1 139 0 34093 genus 1 139 139 Simkania negevensis 1 0 species 83561 Parachlamydiaceae 838 4 0 1 92713 5 family 327 Candidatus Protochlamydia 2 1 0 genus 1 282132 1 Candidatus Protochlamydia naegleriophila 326 0 389348 species 83551 genus 0 506 1 1 506 Parachlamydia acanthamoebae species 83552 0 0 92714 family 334 2 genus 5 71666 1 0 334 Waddlia 2 1 329 Waddlia chondrophila 0 species 71667 order 4 51291 1 0 13 1697 Chlamydiales 1693 12 0 809 family 1693 12 1113537 no rank 0 12 Chlamydia 1693 0 1 810 59 genus 0 85991 species 1 Chlamydia pecorum 249 1 Chlamydia caviae 102 83557 species 0 0 species 83560 1 170 Chlamydia muridarum Chlamydia pneumoniae 85 1 0 83558 species 0 species 83559 1 161 Chlamydia suis 0 813 species 1 Chlamydia trachomatis 125 191 Chlamydia felis 1 0 species 83556 0 1457153 species 1 Chlamydia gallinacea 216 0 species 83554 98 Chlamydia psittaci 1 1 80 Chlamydia avium species 1457141 0 Chlamydia abortus 157 1 83555 species 0 134625 phylum 0 1854 5 class 1921781 4 1 0 1854 Kiritimatiellae 5 4 1850 Kiritimatiellales order 1921782 12 1 0 family 2 1921783 1 0 3 1838 Kiritimatiellaceae 2 Kiritimatiella 1836 17 1921784 genus 0 1 1 Kiritimatiella glycovorans 1819 1307763 species 0 11351 3 0 phylum 256845 3 Lentisphaeria 11351 1313211 32 class 0 1 1 0 order 278082 1125 11319 Victivallales 2 10194 1 no rank 1674876 0 10194 Victivallales bacterium CCUG 44730 1 0 species 2094242 27 23391 Verrucomicrobia phylum 74201 6 1 0 class 134549 2 1 0 2 210 Spartobacteria 134550 genus 0 208 1 1 208 no rank 2648876 0 species 1704307 0 1 208 Candidatus Xiphinematobacter sp. Idaho Grape 6 9420 Verrucomicrobiae 1 0 class 4 203494 9416 Verrucomicrobiales 5 1 0 order 48461 51 9365 Akkermansiaceae 4 1 0 family 1647988 53 1 0 genus 239934 57 3 9312 Akkermansia 239935 species 0 1 Akkermansia muciniphila 6563 1 Akkermansia glycaniphila 2692 1679444 species 0 549 Methylacidiphilae 4 1 0 class 1955630 2 3 547 Methylacidiphilales 1 0 order 6 717963 family 717964 0 2 541 genus 511745 0 541 2 species 511746 0 1 314 Methylacidiphilum infernorum species 591154 0 1 227 Methylacidiphilum fumariolicum 12 9995 Opitutae 1 0 class 90 414999 Puniceicoccales 922 4 0 1 8 415001 order 1 0 family 1 415002 914 Puniceicoccaceae 3 0 1 442430 11 genus 2 Coraliomargarita 913 0 395922 species 1 Coraliomargarita akajimensis 902 7 Opitutales 8983 192 415000 order 0 1 6 8791 Opitutaceae 1 0 family 134623 114 0 1 178440 18 genus Opitutus 2606 2 0 107709 species 1 Opitutus terrae 2588 2 Lacunisphaera 2629 51 1961799 genus 0 1 0 species 1838286 1 2578 Lacunisphaera limnophila no rank 278955 0 1 3442 Opitutaceae bacterium TAV5 3442 1 0 794903 species 2 3211 417295 no rank 0 0 1637999 species 1 Verrucomicrobia bacterium IMCC26134 1667 1544 Verrucomicrobia bacterium 1 0 species 2026799 phylum 1224 1184 1 0 2546636 Proteobacteria 2021 580370 4 class 0 1 Zetaproteobacteria 2044 6 order 580371 33 1 0 5 2040 Mariprofundales 2007 Mariprofundaceae 4 1 0 family 580372 17 Mariprofundus 1990 3 0 1 377315 20 genus Mariprofundus aestuarium 919 1 1921086 species 0 Mariprofundus ferrinatatus 1051 1 1921087 species 0 1 0 class 2315 28211 566 633107 Alphaproteobacteria 2800059 order 0 2 1008 family 2800061 0 1008 2 1 0 genus 25 74317 1008 Maricaulis 2 0 74318 species 1 Maricaulis maris 983 1921002 7 order 0 1 8 Holosporales 899 family 3 2100208 1 0 2 320 Caedimonadaceae 0 1509243 genus 317 1 1 317 Candidatus Nucleicultrix amoebiphila species 1509244 0 Holosporaceae 353 2 44746 4 family 0 1 no rank 204454 0 1 349 349 endosymbiont of Acanthamoeba sp. UWC8 1 species 86106 0 0 1 1777752 5 family 3 Candidatus Paracaedibacteraceae 219 2 Candidatus Paracaedibacter 214 0 1 2 1521255 genus species 91604 0 212 Candidatus Paracaedibacter acanthamoebae 1 Rhodobacterales 110790 93 0 1 667 204455 order Rhodobacteraceae 110123 92 31989 2080 family 0 1 1 1272 0 genus 1649279 0 379347 species 1 Ruegeria mobilis 1272 Roseibacterium 1369 2 0 1 2 159345 genus 159346 species 0 Roseibacterium elongatum 1367 1 1 0 genus 2 119541 883 Rhodobaca 2 1 881 Rhodobaca barguzinensis 0 species 441209 1 0 genus 14 60136 3302 Sulfitobacter 3 1422 1 no rank 196795 0 species 1917485 0 1 1422 Sulfitobacter sp. AM1-D1 1866 Sulfitobacter pseudonitzschiae 1 0 species 1402135 0 309512 genus 1634 1 0 215813 species 1 Dinoroseobacter shibae 1634 2 Halocynthiibacter 604 1579315 7 genus 0 1 0 1579316 species 1 Halocynthiibacter arcticus 597 0 1 227873 64 genus 2 Pannonibacter 3334 species 121719 0 1 3270 Pannonibacter phragmitetus 817 Marivivens 2 1 0 genus 8 1759396 809 1 no rank 2622455 0 Marivivens sp. JLT3646 809 1 1920883 species 0 2161 Octadecabacter 4 1 0 genus 6 53945 730 Octadecabacter antarcticus 1 species 1217908 0 1 433 Octadecabacter temperatus 0 species 1458307 0 species 53946 992 Octadecabacter arcticus 1 3 74032 genus 0 1 Antarctobacter 1368 2 1 1365 Antarctobacter heliothermus species 74033 0 2 1260 Jannaschia genus 3 188905 1 0 1 1257 0 no rank 2645469 1257 Jannaschia sp. CCS1 1 species 290400 0 436357 genus 0 Thalassococcus 9 1 1 0 genus 26 875170 5561 Celeribacter 5 Celeribacter ethanolicus 1488 1 0 1758178 species 1208324 species 0 Celeribacter indicus 1969 1 0 species 1397108 482 Celeribacter marinus 1 species 1411902 0 1 1596 Celeribacter manganoxidans genus 14 1097466 1 0 2316 Defluviimonas 2 0 species 1335048 2302 Defluviimonas alba 1 4 Labrenzia 5392 108 478070 genus 0 1 Labrenzia aggregata 1912 1 187304 species 0 2648686 no rank 0 2 3372 species 1674922 0 1900 Labrenzia sp. CP4 1 2021862 species 0 1 Labrenzia sp. VG12 1472 360528 42 genus 0 1 2 Pelagibaca 2356 1250539 species 0 1 Pelagibaca abyssi 2314 2 Confluentimicrobium 1509 1609958 5 genus 0 1 2643318 no rank 0 1504 1 species 1609966 0 1504 Confluentimicrobium sp. EMB200-NS6 1 1650 Thioclava 2 1 0 genus 285107 6 species 1915078 0 1644 Thioclava nitratireducens 1 Sagittula 3325 2 15 58842 genus 0 1 0 2624628 no rank 1 3310 2009329 species 0 Sagittula sp. P11 3310 1 367771 115 genus 0 1 2 Marinovum 2332 2217 Marinovum algicola 1 species 42444 0 2 2396 58840 no rank 0 0 2033435 species Rhodobacteraceae bacterium QY30 1428 1 0 species 1904441 1 968 Rhodobacteraceae bacterium 97050 70 genus 0 1 3 Ruegeria 3639 0 2625375 no rank 1 1174 0 species 292414 1 1174 Ruegeria sp. TM1040 1 Ruegeria pomeroyi 2395 0 89184 species 1 74030 genus 0 1 2 Roseovarius 1179 Roseovarius mucosus 1178 1 0 215743 species 0 2211641 genus 1442 1 species 245188 0 1442 Loktanella vestfoldensis 1 19 2433 genus 0 1 3 Roseobacter 1926 1 1113 Roseobacter litoralis species 42443 0 Roseobacter denitrificans 794 1 2434 species 0 157 302485 genus 0 1 Phaeobacter 10361 5 221822 species 0 Phaeobacter inhibens 3425 1 species 1580596 0 1 2675 Phaeobacter piscinae Phaeobacter porticola 791 1 1844006 species 0 0 species 60890 3313 Phaeobacter gallaeciensis 1 11113 Rhodobacter 5 genus 1060 103 1 0 species 1063 0 1 4848 Rhodobacter sphaeroides no rank 196779 0 3296 2 0 1850250 species 1 Rhodobacter sp. LPB0142 1505 1791 Rhodobacter sp. CZR27 1 0 species 2033869 0 1061 species 1 Rhodobacter capsulatus 2866 2 Planktomarina 303 1284657 1 genus 0 1 1284658 species 0 1 Planktomarina temperata 302 3 Ketogulonicigenium 2728 0 1 60 92944 genus 1308 Ketogulonicigenium robustum 1 species 92947 0 1360 Ketogulonicigenium vulgare 1 species 92945 0 0 245186 genus 1 Loktanella 2 0 263377 genus 4784 2 species 1229727 0 2461 Thiobacimonas profunda 1 0 2640570 no rank 1 2323 0 species 1792508 2323 Yangia sp. CCB-MM3 1 genus 34008 75 1 0 4 6274 Rhodovulum 1 2891 Rhodovulum sulfidophilum 0 species 35806 2631432 no rank 0 2 3308 0 species 1564506 1627 Rhodovulum sp. P5 1 species 308754 0 1681 Rhodovulum sp. MB263 1 genus 16 191028 1 0 1587 Leisingera 2 0 species 133924 1571 Leisingera methylohalidivorans 1 16712 Paracoccus 9 1 0 genus 231 265 Paracoccus sp. CBA4604 1796 1 0 2065379 species 0 species 266 1 2811 Paracoccus denitrificans 1310 1 246570 no rank 0 0 1529068 species 1 Paracoccus sp. BM15 1310 1077935 species 0 1 Paracoccus zhejiangensis 1862 3187 Paracoccus yeei 1 0 species 147645 34004 species 0 Paracoccus aminovorans 2312 1 1945662 species 0 Paracoccus contaminans 1861 1 34003 species 0 1 Paracoccus aminophilus 1342 Tateyamaria 1143 2 299261 6 genus 0 1 1 Tateyamaria omphalii 1137 299262 species 0 9 Pelagibacterales 1532 54526 10 order 0 1 2 544 Candidatus Fonsibacter 1 0 genus 2 2045213 1 542 Candidatus Fonsibacter ubiquis species 1925548 0 6 978 Pelagibacteraceae family 3 1655514 1 0 no rank 1655516 0 514 2 species 744985 0 321 alpha proteobacterium HIMB59 1 alpha proteobacterium HIMB5 193 1 859653 species 0 3 Candidatus Pelagibacter 461 198251 1 genus 0 1 305 Candidatus Pelagibacter ubique 1 species 198252 0 1 155 0 no rank 2647897 0 species 1002672 1 155 Candidatus Pelagibacter sp. IMCC9063 2732 6 order 2800060 0 1 0 family 77 69657 2732 Hyphomonadaceae 6 2 655 Hirschia 1 0 genus 2723 3 Hirschia baltica 652 1 2724 species 0 37 85 genus 0 1 3 Hyphomonas 2000 81032 species 0 1 Hyphomonas neptunium 1223 0 no rank 2630699 1 740 1906738 species 0 Hyphomonas sp. Mor2 740 1 53 Rickettsiales 7472 766 50 order 0 1 339 1 no rank 1699067 0 1 Rickettsiales bacterium Ac37b 339 0 1528098 species 1 0 family 775 13 3724 Rickettsiaceae 27 1 315 genus 2115980 0 Candidatus Phycorickettsia trachydisci 315 1 0 2115978 species 33988 tribe 0 3396 25 2890 Rickettsia 23 genus 780 351 1 0 17 1346 114277 species group 0 species 33991 0 50 Rickettsia montanensis 1 1 119 Rickettsia peacockii species 47589 0 Rickettsia monacensis 127 1 109232 species 0 1 Rickettsia heilongjiangensis 13 0 226665 species 787 species 0 1 Rickettsia australis 348 21 Rickettsia slovaca 1 0 species 35794 0 783 species 1 Rickettsia rickettsii 29 Rickettsia africae 52 1 35788 species 0 1 Rickettsia felis 139 42862 species 0 29 Rickettsia philipii 1 species 1105106 0 0 species 35791 61 Rickettsia massiliae 1 species 781 0 26 Rickettsia conorii 1 1 157 Rickettsia akari species 786 0 species 33992 0 85 Rickettsia rhipicephali 1 species 33989 0 53 Rickettsia amblyommatis 1 Rickettsia parkeri 12 1 0 35792 species 35790 species 0 1 Rickettsia japonica 25 0 114292 species group 2 425 0 species 782 230 Rickettsia prowazekii 1 Rickettsia typhi 195 1 785 species 0 1129742 species group 0 450 2 0 species 33990 1 336 Rickettsia bellii 0 788 species Rickettsia canadensis 114 1 318 1 0 114295 no rank 337479 species 0 1 Rickettsia endosymbiont of Bemisia tabaci 318 Orientia 506 2 0 1 69474 1 genus Orientia tsutsugamushi 505 1 784 species 0 3210 Anaplasmataceae 22 family 11 942 1 0 768 genus 0 3 467 770 species 0 1 Anaplasma marginale 181 139 1 0 106179 species group 0 948 species Anaplasma phagocytophilum 139 1 1 Anaplasma centrale 147 0 769 species 1 0 genus 42 943 1006 Ehrlichia 6 0 106178 species group 4 770 779 species 0 1 Ehrlichia ruminantium 314 68 Ehrlichia muris 1 0 species 35795 1 172 Ehrlichia chaffeensis species 945 0 216 Ehrlichia canis 1 species 944 0 no rank 106181 0 194 1 0 391036 species Ehrlichia sp. HF 194 1 1300 8 0 952 tribe Wolbachia 1300 8 953 9 genus 0 1 0 no rank 2640676 1291 7 163164 species 0 1 Wolbachia endosymbiont of Drosophila melanogaster 212 0 100901 species 1 Wolbachia endosymbiont of Onchocerca ochengi 126 Wolbachia endosymbiont of Brugia malayi 114 1 80849 species 0 1 Wolbachia endosymbiont of Drosophila simulans 437 77038 species 0 1 Wolbachia endosymbiont of Onchocerca volvulus 113 77551 species 0 species 246273 0 1 120 Wolbachia endosymbiont of Cimex lectularius 1 Wolbachia sp. wRi 169 66084 species 0 genus 4 33993 1 0 4 426 Neorickettsia 950 species 0 1 Neorickettsia risticii 111 species 951 0 110 Neorickettsia sennetsu 1 1 201 Neorickettsia helminthoeca species 33994 0 1 0 family 1328881 5 149 Candidatus Midichloriaceae 2 411566 genus 0 1 144 species 234827 0 144 Candidatus Midichloria mitochondrii 1 212 275860 Rhizobiales order 356 2916 1 0 Methylocystaceae 4168 6 0 1 31993 50 family 1 0 genus 66 133 2414 Methylocystis 3 no rank 2625913 0 1 1236 0 species 187303 1236 Methylocystis sp. SC2 1 1112 Methylocystis bryophila 1 species 655015 0 genus 60 425 1 0 2 1704 Methylosinus 1 1644 Methylosinus trichosporium 0 species 426 family 2036754 46 1 0 4 4450 Chelatococcaceae 151 28209 genus 0 1 3 Chelatococcus 4404 0 2638111 no rank 2599 1 0 1702325 species Chelatococcus sp. CO-6 2599 1 1654 Chelatococcus daeguensis 1 0 species 444444 7 Xanthobacteraceae 8622 96 335928 family 0 1 genus 47 152053 1 0 2657 Starkeya 2 0 species 921 2610 Starkeya novella 1 0 1 52 6 genus Azorhizobium 3029 2 2977 Azorhizobium caulinodans 1 0 species 7 0 1 97 279 genus 2 Xanthobacter 2840 1 2743 Xanthobacter autotrophicus 0 species 280 no rank 119042 0 5156 6 2 Methyloceanibacter 1668 0 1 1484898 20 genus 0 1384459 species Methyloceanibacter caenitepidi 1648 1 0 1 42 1734920 genus 2 Pseudorhodoplanes 1303 1 1261 Pseudorhodoplanes sinuspersici 0 species 1235591 2185 Hartmannibacter 2 1 0 genus 39 1572860 0 species 1482074 1 2146 Hartmannibacter diazotrophicus Rhizobiaceae 91145 55 913 82115 family 0 1 65426 36 0 227290 no rank Rhizobium 45345 27 3477 379 genus 0 1 2532 Rhizobium phaseoli 1 0 species 396 Rhizobium etli 5084 1 29449 species 0 384 species 0 Rhizobium leguminosarum 10203 1 21 19693 2613769 no rank 0 species 2020312 0 1 1449 Rhizobium sp. CIAT894 1475 Rhizobium sp. N324 1 0 species 1703969 species 1703964 0 1 12 Rhizobium sp. N621 1 1786 Rhizobium sp. NXC24 0 species 2048897 Rhizobium sp. N1341 3 1 1703962 species 0 0 species 1703965 12 Rhizobium sp. N6212 1 1621 Rhizobium sp. Y9 1 species 1914541 0 0 1703961 species 1 Rhizobium sp. N1314 317 1703968 species 0 Rhizobium sp. N871 4 1 species 1571470 0 1 2199 Rhizobium sp. ACO-34A 1 1520 Rhizobium sp. IRBG74 species 424182 0 1 352 Rhizobium sp. TAL182 0 species 2020313 0 species 1301032 1 1279 Rhizobium sp. IE4771 species 1703966 0 1 317 Rhizobium sp. N731 Rhizobium sp. N741 3 1 1703967 species 0 species 1703960 0 1 3 Rhizobium sp. N113 1638 Rhizobium sp. S41 1 species 1869170 0 1299 Rhizobium sp. NT-26 1 0 species 1125847 0 species 2028343 1 2069 Rhizobium sp. 10195 species 2020311 0 1 1121 Rhizobium sp. Kim5 1 Rhizobium sp. NXC14 1214 1981173 species 0 0 species 56730 2711 Rhizobium gallicum 1 Rhizobium tropici 1645 1 398 species 0 1525371 13 genus 0 1 Neorhizobium 3783 2 3770 Neorhizobium galegae 1 0 species 399 7 16298 Agrobacterium 1 0 genus 357 368 359 species 0 Agrobacterium rhizogenes 2137 1 1183400 species group 0 8775 2 0 species 1176649 1970 Agrobacterium fabrum 1 0 358 species 1 Agrobacterium tumefaciens 6805 2 3543 0 no rank 2632611 1 1914 Agrobacterium sp. H13-3 species 861208 0 1 1629 Agrobacterium sp. RAC06 0 species 1842536 0 species 373 1475 Agrobacterium vitis 1 no rank 227292 0 10 20661 0 1 106591 31 genus Ensifer 4497 3 1 2099 Ensifer sojae species 716925 0 Ensifer adhaerens 2367 1 106592 species 0 16164 Sinorhizobium 7 genus 28105 461 1 0 1 3592 Sinorhizobium meliloti 0 species 382 2 3766 no rank 2613772 0 0 1842534 species 1 Sinorhizobium sp. RAC02 2061 1 1705 Sinorhizobium sp. CCBAU 05631 species 794846 0 663276 species group 0 4215 1 1 4215 Sinorhizobium fredii 0 species 380 0 species 194963 2372 Sinorhizobium americanum 1 0 110321 species 1 Sinorhizobium medicae 1758 1 0 genus 323620 38 3032 Shinella 2 1 2994 no rank 2643062 0 0 species 879274 1 2994 Shinella sp. HZN7 Liberibacter 1113 6 34019 21 genus 0 1 1273132 species 0 Liberibacter crescens 207 1 Candidatus Liberibacter americanus 124 1 0 309868 species Candidatus Liberibacter solanacearum 214 1 556287 species 0 1 249 Candidatus Liberibacter africanus 0 species 34020 Candidatus Liberibacter asiaticus 298 1 0 34021 species Phyllobacteriaceae 25674 20 0 1 69277 186 family 2 1463 Chelativorans 1 0 genus 8 449972 0 2643807 no rank 1455 1 1 1455 Chelativorans sp. BNC1 0 species 266779 Mesorhizobium 17602 9 538 68287 genus 0 1 536018 species 0 Mesorhizobium australicum 2112 1 0 71433 species 1 Mesorhizobium amorphae 1940 1 Mesorhizobium loti 2136 0 381 species 1 Mesorhizobium ciceri 2928 0 39645 species Mesorhizobium japonicum 1985 1 2066070 species 0 1466 Mesorhizobium sp. B7 1 0 species 1670800 no rank 325217 0 1 2239 278153 species 0 Mesorhizobium sp. WSM1497 2239 1 Mesorhizobium opportunistum 2258 1 593909 species 0 1348 Hoeflea 2 1 0 genus 11 274591 1 1337 no rank 2614931 0 1 1337 Hoeflea sp. IMCC20628 species 1620421 0 2 Phyllobacterium 1469 28100 10 genus 0 1 1 Phyllobacterium zundukense 1459 0 1867719 species 1321 Nitratireductor 2 genus 245876 29 1 0 1292 Nitratireductor basaltis 1 species 472175 0 Aminobacter 2285 2 0 1 23 31988 genus species 83263 0 2262 Aminobacter aminovorans 1 1 0 family 53 118882 20 10328 Brucellaceae 14 Brucella 5172 0 1 2039 234 genus 0 species 29459 157 Brucella melitensis 1 1 Brucella ovis 56 236 species 0 229 Brucella canis 1 0 species 36855 29461 species 0 Brucella suis 178 1 1 Brucella vulpis 425 0 981386 species 1 Brucella ceti 242 0 120577 species 0 235 species 1 Brucella abortus 183 1 241 Brucella pinnipedialis species 120576 0 0 no rank 2632610 1335 4 1 308 Brucella sp. 09RB8910 species 1844051 0 Brucella sp. 09RB8471 360 1 1149952 species 0 species 1891098 0 1 79 Brucella sp. 2002734562 0 1885919 species Brucella sp. 141012304 588 1 87 Brucella microti 1 species 444163 0 5 Ochrobactrum 5103 67 528 genus 0 1 1 1581 Ochrobactrum anthropi species 529 0 1 1098 Ochrobactrum pituitosum species 571256 0 Ochrobactrum sp. A44 1335 1 0 271865 species 0 419475 species Ochrobactrum pseudogrignonense 1022 1 family 723 41294 1 0 50006 Bradyrhizobiaceae 26 8 40136 genus 0 1 Oligotropha 1491 2 Oligotropha carboxidovorans 1483 1 40137 species 0 2 11939 Rhodopseudomonas 1 0 genus 230 1073 species 1076 0 1 11709 Rhodopseudomonas palustris 85413 145 genus 0 1 5 Bosea 7678 0 species 1526658 2036 Bosea vaviloviae 1 0 2653178 no rank 3 5497 1 1752 Bosea sp. PAMC 26642 0 species 1792307 0 species 1842539 2002 Bosea sp. RAC05 1 1743 Bosea sp. AS-1 1 species 2015316 0 1 0 genus 911 17 1970 Nitrobacter 3 1 Nitrobacter hamburgensis 1047 912 species 0 0 species 913 906 Nitrobacter winogradskyi 1 24995 Bradyrhizobium 11 genus 374 645 1 0 0 1274631 species Bradyrhizobium icense 1428 1 1 2102 Bradyrhizobium oligotrophicum 0 species 44255 3823 Bradyrhizobium japonicum 1 species 375 0 Bradyrhizobium diazoefficiens 4058 1 1355477 species 0 0 2631580 no rank 12939 6 2057741 species 0 Bradyrhizobium sp. SK17 2111 1 species 115808 0 2179 Bradyrhizobium sp. ORS 285 1 Bradyrhizobium sp. ORS 278 2384 1 0 114615 species Bradyrhizobium sp. 1868 1 376 species 0 1 2249 Bradyrhizobium sp. CCGE-LA001 0 species 1223566 0 288000 species 1 Bradyrhizobium sp. BTAi1 2148 2 Variibacter 1210 1649510 5 genus 0 1 1205 Variibacter gotjawalensis 1 species 1333996 0 0 1 130 119045 family 15 Methylobacteriaceae 32974 Methylobacterium 19262 9 0 1 1061 407 genus 1 2383 Methylobacterium nodulans species 114616 0 3 6425 0 no rank 2615210 426117 species 0 Methylobacterium sp. 4-46 2419 1 1479019 species 0 1 Methylobacterium sp. C1 2136 1 1870 Methylobacterium sp. AMS5 0 species 925818 0 418223 species Methylobacterium phyllosphaerae 1844 1 species 270351 0 3323 Methylobacterium aquaticum 1 1 Methylobacterium oryzae 1935 334852 species 0 31998 species 0 Methylobacterium radiotolerans 2291 1 0 1 34 186650 genus Microvirga 2547 2 0 1882682 species Microvirga ossetica 2513 1 3 11035 0 genus 2282523 0 29429 species Methylobacterium zatmanii 1738 1 408 species 0 Methylobacterium extorquens 5871 1 223967 species 0 1 Methylobacterium populi 3426 772 6 family 0 1 18 Bartonellaceae 7317 1 0 genus 125 773 17 7311 Bartonella 33045 species 0 1 Bartonella grahamii 266 531 Bartonella tribocorum 1 species 85701 0 1686310 species 0 Bartonella apis 1518 1 species 388640 0 210 Bartonella australis 1 6 2656 0 2645622 no rank 0 species 1933906 572 Bartonella sp. JB15 1 515256 species 0 1 Bartonella sp. 1-1C 318 1933907 species 0 Bartonella sp. JB63 597 1 0 1933904 species 1 Bartonella sp. WD16.2 359 399 Bartonella sp. Raccoon60 1 species 1933912 0 1933910 species 0 1 Bartonella sp. A1379B 411 56426 species 0 1 Bartonella clarridgeiae 561 0 species 774 309 Bartonella bacilliformis 1 Bartonella vinsonii 260 1 33047 species 0 376 Bartonella ancashensis 1 species 1318743 0 198 Bartonella henselae 1 species 38323 0 803 species 0 1 Bartonella quintana 301 Beijerinckiaceae 2126 5 0 1 3 45404 family 532 18 genus 0 1 Beijerinckia 960 2 1 Beijerinckia indica 942 533 species 0 Methylocella 1163 2 120652 15 genus 0 1 0 species 199596 1 1148 Methylocella silvestris family 119043 6 1 0 3 1433 Rhodobiaceae 2 1427 Parvibaculum 1 0 genus 256616 19 256618 species 0 1 Parvibaculum lavamentivorans 1408 45401 236 family 0 1 19 Hyphomicrobiaceae 19733 2 1784 Blastochloris 1 0 genus 59282 46 1738 Blastochloris viridis 1 species 1079 0 Devosia 6271 4 0 1 176 46913 genus 3 6095 0 196773 no rank 1227 Devosia sp. I507 1 0 species 2083786 2878 Devosia sp. A16 1 species 1736675 0 0 species 1643450 1990 Devosia sp. H5989 1 4 5418 Hyphomicrobium 1 0 genus 81 70 species 53399 0 1 1760 Hyphomicrobium denitrificans Hyphomicrobium nitrativorans 1858 1 0 1427356 species 1730 1 no rank 2619925 0 717785 species 0 1 Hyphomicrobium sp. MC1 1730 1068 24 genus 0 1 2 Rhodomicrobium 1316 species 1069 0 1 1292 Rhodomicrobium vannielii 29407 89 genus 0 1 Rhodoplanes 2496 2 1 2407 2619116 no rank 0 0 674703 species Rhodoplanes sp. Z2-YC6860 2407 1 1 0 genus 119044 8 756 Filomicrobium 2 0 species 1608628 748 Candidatus Filomicrobium marinum 1 1082930 20 genus 0 1 Pelagibacterium 1456 2 0 531813 species 1 Pelagibacterium halotolerans 1436 0 1 255475 41 family Aurantimonadaceae 9812 7 293088 130 genus 0 1 4 Martelella 7996 293089 species 0 Martelella mediterranea 2624 1 1 2792 2629616 no rank 0 2792 Martelella sp. AD-3 1 species 686597 0 species 1486262 0 1 2450 Martelella endophytica 2 1775 Aureimonas 1 0 genus 414371 27 0 2615206 no rank 1 1748 Aureimonas sp. AU20 1748 1 0 1349819 species 6361 7 82117 no rank 0 genus 1632780 63 1 0 2 2262 Phreatobacter 1 2199 Phreatobacter sp. S-12 0 species 1868589 29 213485 genus 0 1 Micavibrio 1296 2 1 Micavibrio aeruginosavorus 1267 0 349221 species 0 clade 62654 733 1 0 genus 767891 733 1 767892 species 0 1 Candidatus Puniceispirillum marinum 733 0 1 20 991903 genus 2 Polymorphum 2070 2050 Polymorphum gilvum 1 0 species 991904 3 591 0 255473 order 591 Parvularculaceae 3 family 255474 13 1 0 0 1 9 208215 genus Parvularcula 578 2 1 569 Parvularcula bermudensis species 208216 0 Magnetococcales 956 4 0 1 9 1191478 order 0 1 1191479 8 family Magnetococcaceae 947 3 0 1 5 162171 genus 2 Magnetococcus 939 Magnetococcus marinus 934 1 1124597 species 0 0 1 204457 649 order Sphingomonadales 101884 82 Sphingomonadaceae 78753 59 0 1 41297 1208 family 3 Sphingorhabdus 1935 0 1 1434046 109 genus 0 2614947 no rank 1826 2 1 946 Sphingorhabdus sp. M41 species 1806885 0 Sphingorhabdus sp. YGSMI21 880 1 2077182 species 0 165696 112 genus 0 1 5 Novosphingobium 10636 Novosphingobium resinovorum 3294 1 158500 species 0 0 species 48935 1826 Novosphingobium aromaticivorans 1 205844 species 0 1 Novosphingobium pentaromativorans 2801 2603 1 0 2644732 no rank Novosphingobium sp. PP1Y 2603 1 0 702113 species 0 2709685 genus 884 1 1 Sphingorhabdus flavimaris 884 266812 species 0 10 12620 Sphingopyxis 1 0 genus 165697 332 Sphingopyxis granuli 1536 1 0 267128 species 0 species 33052 1171 Sphingopyxis terrae 1 0 species 117207 1202 Sphingopyxis alaskensis 1 0 33050 species 1 Sphingopyxis macrogoltabida 2413 Sphingopyxis fribergensis 1337 1 1515612 species 0 4 4629 no rank 2614943 0 1 411 Sphingopyxis sp. LPB0140 0 species 1913578 1390 Sphingopyxis sp. MG 1 0 species 1866325 1 1269 Sphingopyxis sp. 113P3 species 292913 0 1 Sphingopyxis sp. QXT-31 1559 0 1357916 species Sphingobium 20479 15 510 165695 genus 0 1 Sphingobium chlorophenolicum 1566 1 46429 species 0 0 species 1332080 1 1174 Sphingobium baderi 1533 Sphingobium indicum 1 0 species 332055 2611147 no rank 0 6 8262 0 1843368 species Sphingobium sp. RAC03 1391 1 0 407020 species 1 Sphingobium sp. MI1205 1037 0 484429 species Sphingobium sp. YBL2 1577 1 0 627192 species Sphingobium sp. SYK-6 1635 1 1 1147 Sphingobium sp. EP60837 species 1855519 0 0 species 1315974 1475 Sphingobium sp. TKS 1 1 1146 Sphingobium herbicidovorans species 76947 0 1679 Sphingobium cloacae 1 0 species 120107 0 species 1673076 1 1427 Sphingobium hydrophobicum Sphingobium yanoikuyae 1805 1 0 13690 species 1377 Sphingobium japonicum 1 species 332056 0 2 Zymomonas 1146 0 1 92 541 genus 1054 Zymomonas mobilis 1 species 542 0 23501 Sphingomonas 15 genus 13687 567 1 0 species 1560345 0 1 1374 Sphingomonas panacis 0 species 1549858 1729 Sphingomonas taxi 1 1 Sphingomonas koreensis 1581 0 93064 species 3775 Sphingomonas wittichii 2 species 160791 1875 1 0 strain 1283312 0 1 1900 Sphingomonas sp. DC-6 species 397260 0 1938 Sphingomonas sanxanigenens 1 1674 Sphingomonas hengshuiensis 1 species 1609977 0 1504 Sphingomonas melonis 1 0 species 152682 6 9359 0 no rank 196159 1030157 species 0 1 Sphingomonas sp. KC8 1275 1 Sphingomonas sp. NIC1 1491 1961362 species 0 745310 species 0 1 Sphingomonas sp. MM-1 2046 Sphingomonas sp. LM7 1222 1 0 1938607 species 0 species 1327635 1 1433 Sphingomonas sp. Cra20 1 1892 Sphingomonas sp. LK11 species 1390395 0 1 0 genus 150203 80 1804 Blastomonas 2 1724 1 2626550 no rank 0 1 1724 Blastomonas sp. RAC04 0 species 1842535 1440 1 0 genus 2685927 1440 Sphingomonas sp. JJ-A5 1 species 1921510 0 Rhizorhabdus 1628 2 1649486 6 genus 0 1 0 1850238 species Rhizorhabdus dicambivorans 1622 1 1472 Citromicrobium 2 genus 72173 35 1 0 0 no rank 2630544 1 1437 Citromicrobium sp. JL477 1437 1 1634516 species 0 335929 518 family 0 1 Erythrobacteraceae 22482 22 6647 6 0 no rank 2800788 genus 1111 182 1 0 3 3037 Porphyrobacter 2 2855 0 2683265 no rank 1 1267 Porphyrobacter sp. LM 6 species 1896196 0 1 1588 Porphyrobacter HT-58-2 species 2023229 0 genus 1041 285 1 0 3 3610 Erythrobacter 39960 species 0 1 Erythrobacter litoralis 1840 1485 Porphyrobacter neustonensis 1 0 species 1112 0 genus 2800686 1673 2 692370 species 0 1 Altererythrobacter dongtanensis 868 1982042 species 0 1 Altererythrobacter mangrovi 805 1 1090 genus 2800685 0 543877 species 0 1 Altererythrobacter marensis 1090 3148 Altererythrobacter 4 genus 266 361177 1 0 species 476157 0 1 551 Altererythrobacter ishigakiensis 0 species 1267766 1249 Altererythrobacter atlanticus 1 Altererythrobacter epoxidivorans 1082 1 361183 species 0 0 1855416 genus 2 1866 species 266951 0 1 826 Erythrobacter seohaensis 1 Erythrobacter flavus 1040 192812 species 0 2 2078 0 2800681 genus 0 502682 species Erythrobacter gangjinensis 1523 1 1 Erythrobacter atlanticus 555 0 1648404 species Croceicoccus 3445 3 149 1295327 genus 0 1 0 1348774 species 1 Croceicoccus naphthovorans 1386 species 450378 0 1 1910 Croceicoccus marinus 2017 1 2800682 genus 0 2017 Altererythrobacter namhicola 1 species 645517 0 66 91868 Rhodospirillales order 204441 930 1 0 family 41295 962 1 0 30 55667 Rhodospirillaceae genus 55 171436 1 0 2 2839 Tistrella Tistrella mobilis 2784 1 0 171437 species 20033 Azospirillum 5 genus 358 191 1 0 Azospirillum brasilense 6272 1 192 species 0 Azospirillum thiophilum 4261 1 0 528244 species Azospirillum lipoferum 7139 1 0 193 species 1 2003 Azospirillum humicireducens species 1226968 0 1 0 genus 1612157 23 2 1628 Pararhodospirillum 0 species 1084 1 1605 Pararhodospirillum photometricum 1263978 genus 0 1 209 1 Candidatus Endolissoclinum faulkneri 209 1263979 species 0 2 4170 Nitrospirillum genus 1543705 31 1 0 28077 species 0 1 Nitrospirillum amazonense 4139 3 5463 Rhodospirillum 1 0 genus 1081 48 0 species 1085 1 1931 Rhodospirillum rubrum species 34018 0 3484 Rhodospirillum centenum 1 genus 168934 38 1 0 2832 Thalassospira 3 Thalassospira xiamenensis 1258 1 0 220697 species 0 2048283 species 1 Thalassospira sp. CSC3H3 1536 0 1 4 1182780 genus Magnetospira 1416 2 0 2685734 no rank 1412 1 0 1288970 species Magnetospira sp. QH-2 1412 1 1 0 genus 1543704 23 2 2730 Niveispirillum 1 Niveispirillum cyanobacteriorum 2707 0 1612173 species 1 0 genus 346 13134 5 12600 Magnetospirillum 1 3046 Magnetospirillum magneticum species 84159 0 0 no rank 2617991 2 6079 1 3109 Magnetospirillum sp. ME-1 species 1639348 0 species 1663591 0 2970 Magnetospirillum sp. XM-1 1 55518 species 0 Magnetospirillum gryphiswaldense 3129 1 Haematospirillum 785 2 1 1804663 genus 0 1 1549855 species 0 1 Haematospirillum jordaniae 784 family 544 433 1 0 35271 Acetobacteraceae 35 1248 Asaia 2 1 0 genus 26 91914 1 1222 Asaia bogorensis species 91915 0 5 Komagataeibacter 5660 0 1 212 1434011 genus 0 species 33995 963 Komagataeibacter europaeus 1 1 803 Komagataeibacter medellinensis 0 species 1177712 0 species 265960 1 1272 Komagataeibacter nataicola 2410 Komagataeibacter xylinus 1 species 28448 0 364409 59 genus 0 1 Granulibacter 2647 2 Granulibacter bethesdensis 2588 1 0 364410 species genus 83 441 1 0 3267 Gluconobacter 3 species 318683 0 911 Gluconobacter albidus 1 species 442 0 1 2273 Gluconobacter oxydans 1 0 genus 131 434 8 9262 Acetobacter 1204 Acetobacter senegalensis 1 0 species 446692 2987 Acetobacter pasteurianus 1 0 species 438 0 species 104102 1 1134 Acetobacter tropicalis Acetobacter oryzifermentans 549 1 1633874 species 0 1 1248 151157 subgenus 0 0 species 435 1 1248 Acetobacter aceti species 1076596 0 1296 Acetobacter persici 1 0 65959 species Acetobacter pomorum 713 1 genus 1602345 14 1 0 696 Parasaccharibacter 2 682 Parasaccharibacter apium 1 0 species 1510841 179 125216 genus 0 1 Roseomonas 5620 3 Roseomonas gilardii 2627 1 0 257708 species 2617492 no rank 0 1 2814 1 2814 Roseomonas sp. FDAARGOS_362 species 2018065 0 1001 Kozakia 2 1 0 genus 153497 7 Kozakia baliensis 994 1 153496 species 0 0 1 522 116 genus Acidiphilium 2764 3 0 species 524 1305 Acidiphilium cryptum 1 Acidiphilium multivorum 1343 1 0 62140 species 2 Neoasaia 822 320496 5 genus 0 1 1 817 Neoasaia chiangmaiensis 0 species 320497 genus 36 89583 1 0 2 1740 Gluconacetobacter 1 Gluconacetobacter diazotrophicus 1704 0 33996 species 237 204458 order 0 1 20 Caulobacterales 28839 19 Caulobacteraceae 28602 76892 501 family 0 1 genus 28 76890 1 0 1439 Asticcacaulis 2 1 Asticcacaulis excentricus 1411 78587 species 0 1 0 genus 20 26 2376 Phenylobacterium 2 1 Phenylobacterium zucineum 2350 284016 species 0 Caulobacter 13671 6 0 1 75 228 genus 0 69666 species 1 Caulobacter mirabilis 2002 species 69395 0 1 1569 Caulobacter henricii 1 1960 Caulobacter segnis 0 species 88688 3510 1 0 no rank 2648921 3510 Caulobacter sp. K31 1 0 species 366602 Caulobacter vibrioides 4402 1 155892 species 0 1 756 0 81440 no rank 0 species 1759059 1 756 Caulobacteraceae bacterium OTSz_A_272 41275 198 genus 0 1 7 Brevundimonas 9859 0 74313 species 1 Brevundimonas subvibrioides 1795 0 588932 species Brevundimonas naejangsanensis 1695 1 4697 3 0 no rank 2622653 1 Brevundimonas sp. GW460-12-10-14-LB2 1680 0 1827469 species 0 1532555 species Brevundimonas sp. DS20 1450 1 0 1938605 species Brevundimonas sp. LM2 1567 1 species 41276 0 1474 Brevundimonas vesicularis 1 3 1807140 class 0 1 7 Acidithiobacillia 3408 225057 66 order 0 1 Acidithiobacillales 3405 6 family 28 225058 1 0 5 3339 Acidithiobacillaceae 0 1 119977 29 genus 4 Acidithiobacillus 3311 species 920 0 1125 Acidithiobacillus ferrooxidans 1 0 species 33059 1052 Acidithiobacillus caldus 1 0 160808 species Acidithiobacillus ferrivorans 1105 1 1236 2420 class 0 1 886 Gammaproteobacteria 1023266 Legionellales 7081 20 118969 3 order 0 1 15 6466 Legionellaceae 1 0 family 63 444 0 1 7 465 genus Tatlockia 304 2 1 297 Tatlockia micdadei species 451 0 12 Legionella 6099 445 53 genus 0 1 0 species 450 1 376 Legionella longbeachae species 28087 0 1 794 Legionella sainthelensi species 452 0 651 Legionella spiritensis 1 1 Legionella clemsonensis 521 0 1867846 species 1 512 Legionella waltersii 0 species 66969 410 Legionella oakridgensis 1 species 29423 0 45067 species 0 1 Legionella lansingensis 275 Legionella hackeliae 440 1 449 species 0 1 Legionella endosymbiont of Polyplax serrata 102 2005262 species 0 1 348 Legionella fallonii 0 species 96230 1617 Legionella pneumophila 1 0 species 446 family 118968 20 1 0 612 Coxiellaceae 4 1 228 0 no rank 134284 1592897 species 0 Coxiella-like endosymbiont 228 1 2 364 0 776 genus no rank 2676648 0 1 85 species 325775 0 85 Coxiella endosymbiont of Amblyomma americanum 1 Coxiella burnetii 279 1 0 777 species 54 98257 Xanthomonadales order 889 135614 1 0 0 1 1775411 253 family Rhodanobacteraceae 16851 14 0 1 242605 21 genus Luteibacter 1527 2 1 Luteibacter rhizovicinus 1506 242606 species 0 1 910 genus 2233801 0 Xanthomonadales bacterium D13 910 1 2021234 species 0 0 1 94 323413 genus Dokdonella 2630 2 0 species 323415 2536 Dokdonella koreensis 1 1567 Frateuria 2 genus 70411 7 1 0 species 81475 0 1560 Frateuria aurantia 1 7551 Dyella 4 genus 167 231454 1 0 species 445710 0 2662 Dyella thiooxydans 1 0 species 231455 2660 Dyella japonica 1 1 Dyella jiangningensis 2062 0 1379159 species 2 Rhodanobacter 2413 18 75309 genus 0 1 666685 species 0 Rhodanobacter denitrificans 2395 1 1 0 family 32033 994 80517 Xanthomonadaceae 39 Stenotrophomonas 27684 9 0 1 40323 675 genus species 128780 0 1 3585 Stenotrophomonas acidaminiphila 4 7195 196198 no rank 0 Stenotrophomonas sp. KCTC 12332 1568 1 0 1793721 species 1765 Stenotrophomonas sp. MYb57 1 species 1827305 0 0 2005046 species 1 Stenotrophomonas sp. WZN-1 1653 0 species 1904944 1 2209 Stenotrophomonas sp. LM091 0 83617 species 1 Stenotrophomonas nitritireducens 1459 1 2284 Stenotrophomonas rhizophila 0 species 216778 1 12486 0 995085 species group 0 40324 species 1 Stenotrophomonas maltophilia 12486 1 2370 genus 0 1 2 Xylella 722 Xylella fastidiosa 721 1 0 2371 species Lysobacter 10397 5 0 1 156 68 genus Lysobacter enzymogenes 2448 1 69 species 0 1 2449 Lysobacter antibioticus 0 species 84531 1 Lysobacter gummosus 2305 0 262324 species 1 3039 Lysobacter capsici species 435897 0 genus 83614 14 1 0 1690 Luteimonas 2 Luteimonas sp. 100111 1676 1 2006110 species 0 32924 Xanthomonas 17 1 0 genus 1807 338 1 1182 Xanthomonas axonopodis species 53413 0 0 56454 species Xanthomonas hortorum 1246 1 1271 Xanthomonas phaseoli 1 0 species 1985254 0 species 456327 1 1367 Xanthomonas euvesicatoria 1 1661 Xanthomonas perforans 0 species 442694 1 2732 Xanthomonas oryzae 0 species 347 Xanthomonas vasicola 979 1 0 56459 species 0 366650 species 1 Xanthomonas alfalfae 1261 0 species 343 1 3427 Xanthomonas translucens 1 1142 Xanthomonas albilineans 0 species 29447 0 species 56458 1 2534 Xanthomonas sacchari 0 56460 species Xanthomonas vesicatoria 1673 1 0 339 species Xanthomonas campestris 4126 1 1 957 Xanthomonas fragariae 0 species 48664 2 5559 0 643453 species group 1422 Xanthomonas fuscans 1 0 species 366648 0 species 346 1 4137 Xanthomonas citri 6106 Pseudoxanthomonas 3 genus 83618 98 1 0 0 species 314722 1 4011 Pseudoxanthomonas suwonensis 415229 species 0 Pseudoxanthomonas spadix 1997 1 1240482 order 0 4 931 4 931 Orbaceae family 5 1240483 1 0 553 1 0 genus 1193503 0 species 1196095 553 Gilliamella apicola 1 1 0 genus 1335631 20 373 Frischella 2 1 353 Frischella perrara 0 species 1267021 309 Cardiobacteriales 3 order 135615 1 1 0 868 family 0 308 2 2 308 Dichelobacter 1 0 genus 869 7 0 870 species 1 Dichelobacter nodosus 301 4 2568 Immundisolibacterales 1 0 order 44 1934945 0 1 160 1934946 family Immundisolibacteraceae 2524 3 1934947 11 genus 0 1 2 Immundisolibacter 2364 0 1810504 species 1 Immundisolibacter cernigliae 2353 Enterobacterales 366235 242 0 1 91347 1594 order 0 1 118 1903409 family 27 Erwiniaceae 28306 2 Buchnera 1752 0 1 3 32199 genus 1 1749 Buchnera aphidicola 0 species 9 Pantoea 14728 11 0 1 728 53335 genus 1235990 species 0 1 Candidatus Pantoea carbekii 171 1 Pantoea rwandensis 926 0 1076550 species species group 1654067 0 1 2348 species 549 0 1 2348 Pantoea agglomerans 553 species 0 Pantoea ananatis 1338 1 Pantoea stewartii 1106 1 66269 species 0 1 2347 Pantoea vagans species 470934 0 1891675 species 0 1 Pantoea alhagi 1146 0 no rank 2630326 3 4618 0 species 1484158 1409 Pantoea sp. PSNIH1 1 592316 species 0 Pantoea sp. At-9b 1457 1 species 1484157 0 1 1752 Pantoea sp. PSNIH2 8 Erwinia 7064 551 303 genus 0 1 0 species 79967 1 764 Erwinia pyrifoliae 0 species 1619313 1 1687 Erwinia gerundensis 134 Candidatus Erwinia sp. ErCipseudotaxifoliae 1 species 1922217 0 0 2622719 no rank 1 838 Erwinia sp. Ejp617 838 1 215689 species 0 1 Erwinia amylovora 621 552 species 0 0 182337 species 1 Erwinia billingiae 1556 Erwinia tasmaniensis 1161 1 0 338565 species 0 1 27 82986 genus Tatumella 754 2 1 727 Tatumella citrea 0 species 53336 297 1 0 51228 genus 0 51229 species Wigglesworthia glossinidia 297 1 3593 2 0 2100764 genus 665914 species 0 Pantoea gaviniae 1726 1 1 Pantoea calida 1867 665913 species 0 1903414 53 family 0 1 Morganellaceae 11616 21 320 1 637 genus 0 320 Arsenophonus symbiont of Lipoptena fortisetosa 1 0 species 634113 2377 Morganella 2 genus 35 581 1 0 0 582 species Morganella morganii 2342 1 1 0 genus 70 29487 1649 Photorhabdus 4 29488 species 0 1 Photorhabdus luminescens 511 446 Photorhabdus asymbiotica 1 0 species 291112 622 Photorhabdus temperata 1 0 species 574560 Xenorhabdus 3461 6 0 1 626 51 genus 0 species 40577 499 Xenorhabdus poinarii 1 0 628 species Xenorhabdus nematophila 710 1 1115 Xenorhabdus bovienii 1 species 40576 0 1 502 Xenorhabdus hominickii species 351679 0 species 351671 0 584 Xenorhabdus doucetiae 1 4 2142 Providencia genus 29 586 1 0 1 546 Providencia alcalifaciens species 126385 0 588 species 0 1 Providencia stuartii 1035 1 Providencia rettgeri 532 0 587 species 1 0 genus 27 583 1614 Proteus 3 species 585 0 1 610 Proteus vulgaris 977 Proteus mirabilis 1 species 584 0 2 881 0 family 1903416 0 1 4 82984 genus Pragia 881 2 0 species 82985 1 877 Pragia fontium 1 0 family 543 2115 116 222853 Enterobacteriaceae 158483 6 genus 0 1 Cedecea 4189 2 species 158822 0 4183 Cedecea neteri 1 401618 genus 0 164 1 1 Candidatus Riesia pediculicola 164 401619 species 0 5 6171 Kosakonia 1 0 genus 1330547 84 208223 species 0 Kosakonia cowanii 2324 1 1413 Kosakonia radicincitans 1 0 species 283686 0 1158459 species 1 Kosakonia sacchari 1226 0 497725 species 1 Kosakonia oryzae 1124 1 76 0 genus 1048757 0 species 1048758 76 Candidatus Moranella endobia 1 5 6621 0 no rank 36866 1 Plautia stali symbiont 1409 0 891974 species Enterobacteriaceae bacterium ENNIH1 1338 1 2066051 species 0 693444 species 0 Enterobacteriaceae bacterium strain FGI 57 1189 1 Enterobacteriaceae bacterium ENNIH3 1312 1 1920128 species 0 0 species 1920109 1 1373 Enterobacteriaceae bacterium ENNIH2 43381 Escherichia 5 genus 381 561 1 0 species 208962 0 1 2434 Escherichia albertii 37437 Escherichia coli 1 species 562 0 1 Escherichia marmotae 1220 1499973 species 0 Escherichia fergusonii 1909 1 564 species 0 genus 160674 102 1 0 3 6054 Raoultella 1579 Raoultella planticola 1 0 species 575 54291 species 0 1 Raoultella ornithinolytica 4373 1 1101 genus 579 0 species 61648 0 1101 Kluyvera intermedia 1 0 1 454 620 genus Shigella 9527 4 0 623 species 1 Shigella flexneri 1792 species 622 0 1 3021 Shigella dysenteriae 4260 1 2629414 no rank 0 0 species 1813821 1 4260 Shigella sp. PAMC 28760 2 1673 Shimwellia genus 1335483 4 1 0 1 Shimwellia blattae 1669 0 563 species 0 1 2180 547 genus Enterobacter 42245 22 9234 9 no rank 2608935 0 1977566 species 0 Enterobacter sp. Crenshaw 676 1 2051905 species 0 Enterobacter sp. CRENT-193 1059 1 642 Enterobacter sp. HK169 1 0 species 1868135 species 1560339 0 1 601 Enterobacter sp. E20 0 1914861 species Enterobacter sp. SA187 1581 1 1167 Enterobacter sp. ODB01 1 species 1827481 0 1238 Enterobacter sp. R4-368 1 0 species 1166130 0 species 1692238 1 1246 Enterobacter sp. FY-07 Enterobacter sp. 638 1024 1 399742 species 0 0 354276 species group 30831 12 0 species 550 1 12076 Enterobacter cloacae Enterobacter ludwigii 1928 1 0 299767 species 3 Enterobacter hormaechei 6038 0 1 158836 3363 species 0 subspecies 1296536 866 Enterobacter xiangfangensis 1 0 1812934 subspecies 1 Enterobacter cloacae complex 'Hoffmann cluster III' 1809 2757714 no rank 0 3817 3 Enterobacter cloacae complex bacterium 992 1 0 2027919 species 1 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1971 0 2077137 species Enterobacter cloacae complex sp. ECNIH7 854 1 1915310 species 0 Enterobacter cloacae complex 'Hoffmann cluster IV' 892 1 0 1812935 species 1377 Enterobacter cancerogenus 1 0 species 69218 species 208224 0 1 1135 Enterobacter kobei 0 species 61645 1 3568 Enterobacter asburiae Salmonella 10220 3 0 1 590 31 genus 0 54736 species Salmonella bongori 1189 1 9000 Salmonella enterica 1 0 species 28901 39 1330546 genus 0 1 Pluralibacter 5179 3 61647 species 0 Pluralibacter gergoviae 3317 1 1 1823 [Enterobacter] lignolyticus species 1334193 0 4 Lelliottia 4606 0 1 26 1330545 genus 0 61646 species Lelliottia amnigena 2193 1 species 1907578 0 1 1050 Lelliottia jeotgali species 69220 0 1 1337 Lelliottia nimipressuralis 2851 17 no rank 191675 0 17 2851 0 84563 clade 1 204 genus 1906659 0 1 204 Candidatus Hoaglandella endobia 0 species 1778263 clade 199891 0 1 192 0 species 1835721 1 192 secondary endosymbiont of Trabutina mannipara 165 1 genus 1682492 0 1 Candidatus Tachikawaea gelatinosa 165 0 1410383 species 1906661 genus 0 186 1 0 1070130 species Candidatus Gullanella endobia 186 1 2 243 Candidatus Doolittlea genus 3 1906657 1 0 1 Candidatus Doolittlea endobia 240 0 1778262 species 234 1 0 genus 1906660 0 species 1778264 234 Candidatus Mikella endobia 1 3 743 146507 clade 0 1 215 secondary endosymbiont of Ctenarytaina eucalypti 0 species 1199245 species 134287 0 291 secondary endosymbiont of Heteropsylla cubana 1 237 1 568987 genus 0 138072 species 0 Candidatus Hamiltonella defensa 237 1 0 84564 clade 7 884 Candidatus Blochmannia 884 7 0 1 203804 3 genus 1 119 Candidatus Blochmannia floridanus species 203907 0 276 2 711328 no rank 0 species 1505597 0 1 169 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505596 species 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 107 1 Candidatus Blochmannia pennsylvanicus 162 1 101534 species 0 1 Candidatus Blochmannia chromaiodes 152 251542 species 0 0 251535 species 1 Candidatus Blochmannia vafer 172 0 1 278 413496 genus Cronobacter 10200 8 1 1754 Cronobacter dublinensis species 413497 0 species 28141 0 1 2062 Cronobacter sakazakii Cronobacter turicensis 1216 1 0 413502 species species 535744 0 1 1381 Cronobacter universalis 939 Cronobacter condimenti 1 species 1163710 0 0 species 413503 1 1156 Cronobacter malonaticus 0 species 413501 1 1414 Cronobacter muytjensii 0 1 570 1482 genus Klebsiella 36924 10 0 548 species Klebsiella aerogenes 2784 1 2 4186 2608929 no rank 0 1905288 species 0 Klebsiella sp. LTGPAF-6F 1856 1 species 1934254 0 1 2330 Klebsiella sp. M5al 10744 Klebsiella pneumoniae 1 species 573 0 species 1134687 0 1 3658 Klebsiella michiganensis 6647 Klebsiella oxytoca 1 species 571 0 Klebsiella quasivariicola 1582 1 2026240 species 0 1463165 species 0 Klebsiella quasipneumoniae 2250 1 3591 Klebsiella variicola 1 species 244366 0 4 4982 Leclercia 1 0 genus 264 83654 83655 species 0 Leclercia adecarboxylata 1429 1 3289 2 0 no rank 2627398 species 1920114 0 1918 Leclercia sp. LSNIH1 1 1371 Leclercia sp. LSNIH3 1 species 1920116 0 409304 genus 0 1 166 0 species 168169 166 Candidatus Ishikawaella capsulata 1 24408 Citrobacter 14 genus 877 544 1 0 0 species 545 1 1408 Citrobacter koseri 0 species 35703 1 2933 Citrobacter amalonaticus 1869 2 no rank 2644389 0 1920110 species 0 1 Citrobacter sp. CFNIH10 943 1702170 species 0 Citrobacter sp. FDAARGOS_156 926 1 species 67825 0 1535 Citrobacter rodentium 1 1039 Citrobacter farmeri 1 0 species 67824 7 14747 species group 1344959 0 0 2066049 species 1 Citrobacter freundii complex sp. CFNIH2 1053 0 546 species 1 Citrobacter freundii 5738 0 species 2077147 1628 Citrobacter freundii complex sp. CFNIH3 1 1549 Citrobacter freundii complex sp. CFNIH9 1 0 species 2077149 1 Citrobacter freundii complex sp. CFNIH4 1210 0 2077148 species 0 species 57706 1845 Citrobacter braakii 1 0 67827 species 1 Citrobacter werkmanii 1724 1 0 family 1903410 66 20 25812 Pectobacteriaceae genus 122277 259 1 0 6 9332 Pectobacterium 1 Pectobacterium wasabiae 1151 0 55208 species 1905730 species 0 1 Pectobacterium parmentieri 1065 1 Pectobacterium atrosepticum 1164 0 29471 species Pectobacterium polaris 1639 1 2042057 species 0 1 4054 Pectobacterium carotovorum species 554 0 11649 Dickeya 6 genus 204037 534 1 0 1 Dickeya fangzhongdai 2037 1778540 species 0 Dickeya solani 3519 1 1089444 species 0 1 Dickeya dadantii 1602 0 204038 species 204042 species 0 1 Dickeya zeae 2176 1 Dickeya dianthicola 1781 204039 species 0 3443 Sodalis 5 genus 84565 111 1 0 161 Sodalis endosymbiont of Henestaris halophilus 1 0 species 1929246 0 1239307 species 1 Sodalis praecaptivus 1300 0 species 63612 1 947 Sodalis glossinidius 0 species 1486991 1 924 Candidatus Sodalis pierantonius 2 1322 Brenneria 1 0 genus 20 71655 1 Brenneria goodwinii 1302 1109412 species 0 39 58223 Yersiniaceae family 292 1903411 1 0 Rahnella 3889 4 0 1 34037 117 genus 2615 2 0 no rank 2635087 species 1805933 0 1 1490 Rouxiella sp. ERMR1:05 species 741091 0 1125 Rahnella sp. Y9602 1 34038 species 0 1 Rahnella aquatilis 1157 Yersinia 10770 13 0 1 629 234 genus Yersinia kristensenii 654 1 0 28152 species Yersinia aleksiciae 547 1 0 263819 species 29485 species 0 Yersinia rohdei 712 1 1649845 species group 0 2074 3 0 367190 species Yersinia similis 585 1 1 914 Yersinia pseudotuberculosis species 633 0 species 632 0 1 575 Yersinia pestis 631 species 0 Yersinia intermedia 662 1 1 632 no rank 2653513 0 species 1839800 0 1 632 Yersinia sp. FDAARGOS_228 0 29486 species Yersinia ruckeri 676 1 species 630 0 1 2050 Yersinia enterocolitica 29483 species 0 1 Yersinia aldovae 648 0 29484 species Yersinia frederiksenii 1881 1 Chania 1012 2 1745211 7 genus 0 1 1 1005 Chania multitudinisentens species 1639108 0 2 Gibbsiella 1671 0 1 929812 20 genus 1651 Gibbsiella quercinecans 1 species 929813 0 1 0 genus 1905 613 16 40542 Serratia 0 species 61652 1 2526 Serratia rubidaea 82996 species 0 Serratia plymuthica 3325 1 1207 Serratia proteamaculans 1 0 species 28151 species 615 0 10036 Serratia marcescens 1 1 2984 Serratia fonticola species 47917 0 0 614 species Serratia liquefaciens 1614 1 1 Serratia ficaria 2769 0 61651 species 8 14176 2647522 no rank 0 species 768490 0 1 1031 Serratia sp. AS12 2033438 species 0 1 Serratia sp. MYb239 1886 Serratia sp. ATCC 39006 1197 1 0 104623 species 2258 Serratia sp. SCBI 1 0 species 488142 768493 species 0 Serratia sp. AS13 1031 1 1 2373 Serratia sp. FS14 0 species 1327989 0 1758196 species 1 Serratia sp. SSNIH1 2145 1 Serratia sp. FGI94 2255 671990 species 0 genus 1565532 0 47 Rouxiella 1 0 451511 no rank 2 1473 2 Plesiomonas 1473 20 702 genus 0 1 703 species 0 Plesiomonas shigelloides 1453 1 14 Hafniaceae 15477 1903412 65 family 0 1 1 0 genus 811 635 12353 Edwardsiella 8 2758 Edwardsiella tarda 1 0 species 636 1 Edwardsiella piscicida 1469 0 1263550 species 1 Edwardsiella anguillarum 1529 1821960 species 0 2676541 no rank 0 2 3387 species 1578828 0 1 1860 Edwardsiella sp. EA181011 species 1650654 0 1 1527 Edwardsiella sp. LADL05-105 0 67780 species 1 Edwardsiella ictaluri 1404 1 Edwardsiella hoshinae 995 93378 species 0 2379 Hafnia 3 1 0 genus 80 568 1 Hafnia alvei 1774 0 569 species 1 525 0 no rank 2621980 0 species 1848580 1 525 Hafnia sp. CBA7124 2 680 Obesumbacterium genus 82982 74 1 0 1 Obesumbacterium proteus 606 82983 species 0 34 10609 Thiotrichales order 72273 10 1 0 20 34064 family 0 1 Francisellaceae 6573 14 6227 Francisella 12 genus 42 262 1 0 263 species 0 1 Francisella tularensis 1571 1542390 species 0 1 Francisella sp. CA97-1460 534 1 718 Francisella noatunensis 0 species 657445 1 Francisella hispaniensis 403 622488 species 0 266 Francisella sp. TX077308 1 0 species 573569 no rank 2610885 0 659 2 293 Francisella sp. FSC1006 1 species 1547445 0 1 366 Francisella sp. MA067296 species 475375 0 954 species 0 1 Francisella persica 264 0 573570 species 1 Francisella sp. TX077310 501 Francisella halioticida 210 1 549298 species 0 Francisella philomiragia 1059 1 0 28110 species 326 1 0 genus 1869285 326 Allofrancisella guangzhouensis 1 species 594679 0 Piscirickettsiaceae 3363 15 0 1 135616 35 family 4 786 Cycloclasticus 1 0 genus 34067 5 517 2 0 no rank 2621467 1 272 Cycloclasticus sp. P1 species 385025 0 0 species 728003 1 245 Cycloclasticus sp. PY97N 1329899 species 0 Cycloclasticus zancles 264 1 2 Piscirickettsia 663 0 1 1237 1 genus Piscirickettsia salmonis 662 1 0 1238 species 0 1 40222 9 genus Methylophaga 885 3 species 754476 0 1 477 Methylophaga nitratireducenticrescens 0 species 754477 1 399 Methylophaga frappieri 0 1 28884 11 genus Hydrogenovibrio 418 2 Hydrogenovibrio crunogenus 407 1 39765 species 0 0 1 2 933 genus 3 Thiomicrospira 576 242 Thiomicrospira cyclica 1 0 species 147268 1 Thiomicrospira aerophila 332 0 92245 species 1 0 family 28 135617 663 Thiotrichaceae 4 genus 1021 0 348 1 0 288004 species 1 Beggiatoa leptomitoformis 348 0 1 1 40751 genus Thioploca 287 2 0 40754 species 1 Thioploca ingrica 286 6 3687 Acidiferrobacterales order 50 1692040 1 0 Acidiferrobacteraceae 3637 5 0 1 91 1692041 family 1744881 36 genus 0 1 2 Sulfuricaulis 1834 1620215 species 0 1 Sulfuricaulis limicola 1798 1 0 genus 48 1692042 2 1712 Sulfurifustis 1 Sulfurifustis variabilis 1664 0 1675686 species 42313 Chromatiales 52 1 0 order 628 135613 Halothiobacillaceae 1977 4 0 1 19 255526 family genus 109262 36 1 0 1958 Halothiobacillus 3 1 811 Halothiobacillus neapolitanus species 927 0 2636392 no rank 0 1111 1 species 1860122 0 1 1111 Halothiobacillus sp. LS2 0 1 1738654 11 family Woeseiaceae 1008 3 997 Woeseia 2 genus 1738655 5 1 0 0 species 1548547 992 Woeseia oceani 1 0 1 251 1046 family 18 Chromatiaceae 15834 1773 1 0 no rank 82569 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 1773 1978339 species 0 6 1980513 genus 0 1 2 Candidatus Nitrosoglobus 356 1630141 species 0 Candidatus Nitrosoglobus terrae 350 1 Thioflavicoccus 1999 2 11 156885 genus 0 1 1988 Thioflavicoccus mobilis 1 species 80679 0 1 0 genus 13724 41 2011 Thiocystis 2 1 Thiocystis violascens 1970 0 73141 species 0 1 52 53392 genus Thiodictyon 3552 2 1 Candidatus Thiodictyon syntrophicum 3500 0 1166950 species 2602 Allochromatium 2 genus 85072 8 1 0 1049 species 0 1 Allochromatium vinosum 2594 2 2047 Marichromatium genus 85076 42 1 0 0 species 37487 2005 Marichromatium purpuratum 1 4 Nitrosococcus 1243 0 1 15 1227 genus 0 473531 species 1 Nitrosococcus watsonii 362 0 species 1229 1 521 Nitrosococcus oceani Nitrosococcus halophilus 345 1 0 133539 species 72276 301 family 0 1 18 Ectothiorhodospiraceae 17561 1726 Halorhodospira 2 1 0 genus 10 85108 Halorhodospira halophila 1716 1 0 1053 species 126 106633 genus 0 1 6 Thioalkalivibrio 8930 species 1033854 0 2665 Thioalkalivibrio sulfidiphilus 1 1364 Thioalkalivibrio nitratireducens 1 0 species 186931 1 1680 Thioalkalivibrio versutus species 106634 0 0 no rank 2621013 1 1555 1 Thioalkalivibrio sp. K90mix 1555 0 396595 species 108010 species 0 Thioalkalivibrio paradoxus 1540 1 Acidihalobacter 980 2 1765964 13 genus 0 1 1 967 Acidihalobacter prosperus species 160660 0 1051 21 genus 0 1 Ectothiorhodospira 1812 2 1791 1 no rank 2684909 0 species 1442136 0 1 1791 Ectothiorhodospira sp. BSL-9 3 1626 Spiribacter genus 1335745 26 1 0 1335746 species 0 Spiribacter salinus 580 1 1335757 species 0 Spiribacter curvatus 1020 1 2 2186 Alkalilimnicola genus 133193 97 1 0 Alkalilimnicola ehrlichii 2089 1 0 351052 species 1676141 47 family 0 1 Wenzhouxiangellaceae 1695 3 0 1 40 1676142 genus 2 Wenzhouxiangella 1648 Wenzhouxiangella marina 1608 1 1579979 species 0 1 0 family 449719 1 1551 Granulosicoccaceae 3 1550 Granulosicoccus 2 1 0 genus 437504 4 1 1546 Granulosicoccus antarcticus 0 species 437505 2 2059 no rank 451214 0 Thiohalobacter 2059 2 41 1273155 genus 0 1 585455 species 0 Thiohalobacter thiocyanaticus 2018 1 0 118884 no rank 12 5014 3 918 32036 clade 0 410330 species 0 Calyptogena okutanii thioautotrophic gill symbiont 299 1 1 Bathymodiolus septemdierum thioautotrophic gill symbiont 363 0 113267 species 0 genus 1541743 1 256 1 Candidatus Ruthia magnifica 256 0 386487 species 644 2 655184 genus 0 1705394 species 0 1 Candidatus Thioglobus autotrophicus 319 1 Candidatus Thioglobus singularis 325 1427364 species 0 0 1 8 1608298 genus Thiolapillus 1113 2 0 1076588 species 1 Thiolapillus brandeum 1105 genus 4 349742 1 0 2 996 Sedimenticola species 1543721 0 992 Sedimenticola thiotaurini 1 198346 clade 0 1 464 0 species 186490 1 464 Candidatus Baumannia cicadellinicola 2 1524249 genus 0 1 Pseudohongiella 879 2 877 Pseudohongiella spirulinae 1 species 1249552 0 34746 Vibrionales 43 1 0 order 135623 11 42 34735 Vibrionaceae 1 0 family 110 641 3573 Photobacterium 4 1 0 genus 20 657 1 1047 Photobacterium profundum species 74109 0 1 Photobacterium damselae 1147 38293 species 0 1 1359 Photobacterium gaetbulicola species 1295392 0 Aliivibrio 1941 4 511678 7 genus 0 1 species 668 0 968 Aliivibrio fischeri 1 0 species 40269 419 Aliivibrio salmonicida 1 1 547 Aliivibrio wodanis species 80852 0 0 genus 2042066 366 1 1 366 Paraphotobacterium marinum species 1755811 0 2 Grimontia 666 0 1 4 246861 genus Grimontia hollisae 662 1 673 species 0 genus 498 662 1 0 28079 Vibrio 30 0 species 29494 1 949 Vibrio furnissii 0 species 55601 1195 Vibrio anguillarum 1 1 585 Vibrio breoganii species 553239 0 1558 Vibrio cholerae 1 0 species 666 0 1891919 species group 1 454 Vibrio tubiashii 454 1 0 29498 species 1 406 Vibrio scophthalmi species 45658 0 1 Vibrio nigripulchritudo 717 0 28173 species 619 Vibrio gazogenes 1 species 687 0 556 Vibrio qinghaiensis 1 species 2025808 0 0 1534743 species Vibrio hyugaensis 558 1 1 632 Vibrio tritonius 0 species 1435069 0 2614977 no rank 2 1828 Vibrio sp. EJY3 1081 1 0 1116375 species 1 Vibrio sp. 2521-89 747 0 2014742 species 1 2021 Vibrio vulnificus 0 species 672 1 1343 Vibrio fluvialis 0 species 676 1 Vibrio coralliilyticus 1343 0 190893 species 0 674 species 1 Vibrio mimicus 1046 10397 10 0 species group 717610 0 species 190895 1 475 Vibrio rotiferianus species 691 0 1697 Vibrio natriegens 1 2 1497 0 species subgroup 2315253 1 1001 Vibrio diabolicus species 50719 0 1 496 Vibrio antiquarius 0 species 150340 0 680 species Vibrio campbellii 1314 1 0 669 species Vibrio harveyi 896 1 1 Vibrio parahaemolyticus 1487 670 species 0 0 species 696485 1 947 Vibrio owensii Vibrio alginolyticus 1608 1 0 663 species 0 species 766224 476 Vibrio jasicida 1 607 Vibrio tasmaniensis 1 species 212663 0 0 species 52443 767 Vibrio tapetis 1 1 0 order 135624 309 56906 Aeromonadales 29 1 0 family 84642 528 28 56597 Aeromonadaceae 2 3215 Zobellella 1 0 genus 347533 42 species 347534 0 3173 Zobellella denitrificans 1 2 Tolumonas 1022 33 43947 genus 0 1 43948 species 0 1 Tolumonas auensis 989 1 0 genus 129577 16 2645 Oceanimonas 2 2636315 no rank 0 1 2629 species 511062 0 1 2629 Oceanimonas sp. GK1 48398 Aeromonas 18 1 0 genus 3049 642 4593 Aeromonas veronii 1 species 654 0 0 species 645 3229 Aeromonas salmonicida 1 2248 Aeromonas aquatica 1 0 species 558964 257493 no rank 0 13206 8 0 species 1636607 1 1409 Aeromonas sp. ASNIH2 1 Aeromonas sp. ASNIH4 1828 1636609 species 0 0 1636608 species 1 Aeromonas sp. ASNIH3 1699 species 2033032 0 1939 Aeromonas sp. CA23 1 1 Aeromonas sp. ASNIH5 1654 0 1758179 species 1614 Aeromonas sp. ASNIH7 1 species 1920107 0 0 1636606 species Aeromonas sp. ASNIH1 1270 1 0 2033033 species Aeromonas sp. CU5 1793 1 2160 Aeromonas rivipollensis 1 0 species 948519 1 Aeromonas caviae 1497 0 648 species 2160 Aeromonas schubertii 1 species 652 0 species 196024 0 2569 Aeromonas dhakensis 1 11833 Aeromonas hydrophila 1 species 644 0 1 Aeromonas media 1854 651 species 0 3 789 Oceanisphaera genus 1 225143 1 0 0 1416627 species Oceanisphaera profunda 524 1 1 Oceanisphaera sp. AMac2203 264 1903694 species 0 0 1 5 1775403 order Nevskiales 1268 4 0 family 568386 32 Sinobacteraceae 1 0 2689614 family 2 1231 2 1231 Steroidobacter genus 13 469322 1 0 0 465721 species Steroidobacter denitrificans 1218 1 0 1 20 135625 order 31 Pasteurellales 23579 30 Pasteurellaceae 23559 475 712 family 0 1 2 Bibersteinia 1363 0 1 476528 3 genus 1 1360 Bibersteinia trehalosi species 47735 0 genus 155493 1 1 0 657 Gallibacterium 2 0 750 species Gallibacterium anatis 656 1 Aggregatibacter 2431 3 47 416916 genus 0 1 0 species 714 1011 Aggregatibacter actinomycetemcomitans 1 1 Aggregatibacter aphrophilus 1373 0 732 species Pasteurella 2154 3 3 745 genus 0 1 species 754 0 674 Pasteurella dagmatis 1 species 747 0 1477 Pasteurella multocida 1 2737 Actinobacillus 5 genus 713 8 1 0 594 Actinobacillus equuli 1 0 species 718 species 67854 0 748 Actinobacillus succinogenes 1 Actinobacillus suis 498 1 716 species 0 1 889 Actinobacillus pleuropneumoniae 0 species 715 6 Haemophilus 7910 724 60 genus 0 1 species 729 0 1 4135 Haemophilus parainfluenzae 0 species 727 1 2078 Haemophilus influenzae 0 2609962 no rank 1 486 0 species 712310 486 Haemophilus sp. oral taxon 036 1 0 730 species [Haemophilus] ducreyi 511 1 0 species 249188 1 640 Haemophilus pittmaniae 2094023 genus 0 1569 1 738 species 0 Glaesserella parasuis 1569 1 214906 genus 0 604 1 1 604 Histophilus somni 0 species 731 2661 Mannheimia 4 1 0 genus 45 75984 2645054 no rank 0 1 791 791 Mannheimia sp. USDA-ARS-USMARC-1261 1 0 species 1432056 1 1153 Mannheimia varigena species 85404 0 Mannheimia haemolytica 672 1 75985 species 0 0 1 697331 1 genus 2 Basfia 998 species 157673 0 997 [Mannheimia] succiniciproducens 1 135618 62 order 0 1 Methylococcales 8849 13 403 73 family 0 1 12 Methylococcaceae 8787 1569 Methylococcus 2 1 0 genus 18 413 Methylococcus capsulatus 1551 1 414 species 0 2 Methylovulum 851 4 762296 genus 0 1 0 species 1704499 1 847 Methylovulum psychrotolerans 2 608 Methylomicrobium 1 0 genus 11 39773 271065 species 0 Methylomicrobium alcaliphilum 597 1 Methylomonas 5686 5 0 1 49 416 genus 702114 species 0 Methylomonas koyamae 1814 1 0 species 421 1 842 Methylomonas methanica 1 1784 0 2608980 no rank 1 1784 Methylomonas sp. DH-1 species 1727196 0 0 species 1538553 1 1197 Methylomonas denitrificans 72274 1322 order 0 1 Pseudomonadales 238037 129 family 135621 1420 1 0 86 214172 Pseudomonadaceae 6264 3 0 351 subfamily 352 58 genus 0 1 Azotobacter 6264 3 0 species 353 1 3821 Azotobacter chroococcum 1 Azotobacter vinelandii 2385 0 354 species 2 Oblitimonas 634 0 1 3 1849530 genus 1 Oblitimonas alkaliphila 631 0 1697053 species Pseudomonas 205854 80 0 1 7743 286 genus 136849 species group 0 18308 8 7890 1 0 251695 species subgroup 0 317 species Pseudomonas syringae 7890 1 0 species 36746 1 1041 Pseudomonas cichorii 0 species subgroup 251698 2 3353 0 29438 species 1 Pseudomonas savastanoi 1693 0 47877 species Pseudomonas amygdali 1660 1 33069 species 0 Pseudomonas viridiflava 1698 1 918 1 no rank 2775504 0 0 species 1206777 918 Pseudomonas sp. Lz4W 1 Pseudomonas syringae group genomosp. 3 2244 1 0 251701 species 0 species 46257 1164 Pseudomonas avellanae 1 244566 species 0 Pseudomonas lurida 1054 1 1209 Pseudomonas antarctica 1 0 species 219572 1 2148 Pseudomonas psychrotolerans species 237610 0 136845 species group 0 6 31084 1 3912 Pseudomonas monteilii species 76759 0 1 Pseudomonas fulva 3972 47880 species 0 0 species 78327 1 3230 Pseudomonas mosselii 1 1362 Pseudomonas plecoglossicida species 70775 0 0 species 303 16695 Pseudomonas putida 1 1 1913 Pseudomonas oryzihabitans species 47885 0 1 Pseudomonas silesiensis 1256 1853130 species 0 1 1880 Pseudomonas alcaliphila 0 species 101564 312306 species 0 1 Pseudomonas entomophila 1738 30 42738 0 196821 no rank species 2083052 0 1 1436 Pseudomonas sp. SWI36 Pseudomonas sp. LPH1 1580 1 1898684 species 0 1 Pseudomonas sp. S-6-2 1101 0 1931241 species 2050 Pseudomonas sp. Os17 1 species 1500686 0 species 1259844 0 1594 Pseudomonas sp. FGI182 1 1 1233 Pseudomonas sp. SWI6 0 species 2083051 1 2246 Pseudomonas sp. ATCC 13867 0 species 1294143 Pseudomonas sp. TCU-HL1 2027 1 0 1856685 species 0 species 2018067 1 1124 Pseudomonas sp. FDAARGOS_380 0 69328 species 1 Pseudomonas sp. VLB120 1679 species 2067572 0 1213 Pseudomonas sp. NC02 1 species 1207075 0 1237 Pseudomonas sp. UW4 1 Pseudomonas sp. XWY-1 1236 1 2069256 species 0 0 1827300 species Pseudomonas sp. MYb193 872 1 0 1338689 species 1 Pseudomonas sp. JY-Q 1225 Pseudomonas sp. CCOS 191 1555 1 1649877 species 0 0 species 1500687 1 2109 Pseudomonas sp. St29 1 2263 Pseudomonas sp. URMO17WK12:I11 0 species 1283291 1 Pseudomonas sp. StFLB209 1559 0 1028989 species species 2083055 0 1 1422 Pseudomonas sp. LH1G9 0 1611770 species Pseudomonas sp. MRSN12121 1589 1 2049589 species 0 1 Pseudomonas sp. HLS-6 1129 Pseudomonas sp. M30-35 767 1 1981174 species 0 Pseudomonas sp. PONIH3 1777 1 0 1636610 species 1024 Pseudomonas sp. GR 6-02 1 0 species 1659194 0 1534110 species 1 Pseudomonas sp. DR 5-09 1094 1067 Pseudomonas sp. LG1D9 1 species 2083054 0 0 1930532 species 1 Pseudomonas sp. CC6-YY-74 1262 Pseudomonas sp. SWI44 1248 1 2083053 species 0 species 1415630 0 1 1020 Pseudomonas sp. TKP species 216142 0 1 1345 Pseudomonas rhizosphaerae species 198620 0 1 2184 Pseudomonas koreensis Pseudomonas brassicacearum 3272 1 0 930166 species 10182 2 136842 species group 0 587753 species 0 1 Pseudomonas chlororaphis 7929 296 species 0 Pseudomonas fragi 2253 1 26981 9 0 136843 species group 0 47879 species Pseudomonas corrugata 1180 1 0 species 380021 2240 Pseudomonas protegens 1 Pseudomonas fluorescens 15275 1 0 294 species 1 Pseudomonas trivialis 1150 200450 species 0 species 76758 0 1 976 Pseudomonas orientalis 75612 species 0 Pseudomonas mandelii 1322 1 Pseudomonas veronii 1247 1 76761 species 0 species 200451 0 1331 Pseudomonas poae 1 47878 species 0 1 Pseudomonas azotoformans 2260 0 104087 species 1 Pseudomonas frederiksbergensis 3149 1 2237 Pseudomonas parafulva species 157782 0 1 1350 Pseudomonas cremoricolorata species 157783 0 Pseudomonas cerasi 1273 1 0 1583341 species 6 27759 0 species group 136841 0 species 43263 2183 Pseudomonas alcaligenes 1 Pseudomonas aeruginosa 8881 1 0 287 species species 53412 0 2195 Pseudomonas resinovorans 1 5014 Pseudomonas citronellolis 1 species 53408 0 1 2619 0 1232139 species subgroup 0 1149133 species 1 Pseudomonas furukawaii 2619 300 species 0 1 Pseudomonas mendocina 6867 1253 Pseudomonas alkylphenolica 1 species 237609 0 1 1035 Pseudomonas versuta 0 species 1788301 0 species 65741 2038 Pseudomonas knackmussii 1 12638 2 0 species group 136846 11215 1 0 578833 species subgroup 11215 Pseudomonas stutzeri 1 0 species 316 1423 Pseudomonas balearica 1 species 74829 0 42 Moraxellaceae 22543 468 77 family 0 1 genus 42 475 1 0 5 2902 Moraxella 0 34062 species 1 Moraxella osloensis 1058 1 Moraxella ovis 402 0 29433 species 1 Moraxella catarrhalis 369 480 species 0 386891 species 0 1 Moraxella bovoculi 1031 88 497 genus 0 1 11 Psychrobacter 3487 1 Psychrobacter urativorans 319 0 45610 species 374 Psychrobacter cryohalolentis 1 0 species 330922 1926 6 196806 no rank 0 1 Psychrobacter sp. AntiMn-1 390 0 1720344 species 1 Psychrobacter sp. PRwf-1 308 349106 species 0 387 Psychrobacter sp. P11G5 1 0 species 1699624 1 291 Psychrobacter sp. G 0 species 571800 1 Psychrobacter sp. P2G3 280 1699622 species 0 0 species 1028416 1 270 Psychrobacter sp. DAB_AL43B 0 334543 species 1 Psychrobacter arcticus 467 0 species 261164 313 Psychrobacter alimentarius 1 1 0 genus 469 294 16077 Acinetobacter 25 0 196816 no rank 3245 7 761 Acinetobacter sp. LoGeW2-3 1 species 1808001 0 1 553 Acinetobacter sp. NCu2D-2 species 1608473 0 1 330 Acinetobacter sp. TTH0-4 species 1646498 0 species 1758189 0 315 Acinetobacter sp. ACNIH2 1 0 species 2079596 360 Acinetobacter sp. SWBY1 1 Acinetobacter sp. ACNIH1 582 1 0 1636603 species 1407071 species 0 1 Acinetobacter sp. TGL-Y2 344 Acinetobacter larvae 337 1 1789224 species 0 40214 species 0 1 Acinetobacter johnsonii 580 596 Acinetobacter junii 1 0 species 40215 0 1148157 species Acinetobacter oleivorans 544 1 1 Acinetobacter haemolyticus 418 0 29430 species 647 1 species 202950 0 1 647 Acinetobacter sp. ADP1 strain 62977 0 species 487316 0 1 437 Acinetobacter soli 1 Acinetobacter radioresistens 576 40216 species 0 0 species 1324350 480 Acinetobacter equi 1 0 species 756892 708 Acinetobacter indicus 1 species group 909768 0 5 5392 106654 species 0 1 Acinetobacter nosocomialis 667 0 1785128 species 1 Acinetobacter lactucae 367 species 471 0 1 794 Acinetobacter calcoaceticus 1 Acinetobacter pittii 1509 48296 species 0 species 470 0 2055 Acinetobacter baumannii 1 0 106648 species Acinetobacter bereziniae 922 1 Acinetobacter schindleri 901 1 0 108981 species Oceanospirillales 48411 70 706 135619 order 0 1 Kangiellaceae 1524 6 0 1 1920240 9 family genus 53 261963 1 0 1515 Kangiella 5 1 Kangiella profundi 377 0 1561924 species species 1144748 0 406 Kangiella sediminilitoris 1 1 Kangiella geojedonensis 243 0 914150 species species 261964 0 436 Kangiella koreensis 1 Halomonadaceae 29550 30 400 28256 family 0 1 2745 374 genus 0 1 Halomonas 18714 15 0 507626 species Halomonas chromatireducens 1576 1 species 115561 0 1542 Halomonas hydrothermalis 1 Halomonas beimenensis 2756 1 475662 species 0 0 1897729 species Halomonas aestuarii 2312 1 1 Halomonas campaniensis 633 213554 species 0 0 no rank 2609666 8 8515 0 species 1118153 541 Halomonas sp. GFAJ-1 1 989 Halomonas sp. R57-5 1 0 species 1610576 0 species 1962264 575 Halomonas sp. 'Soap Lake #7' 1 Halomonas sp. SF2003 1962 1 2136172 species 0 Halomonas sp. GT 476 1 0 1971364 species 1 Halomonas sp. 1513 2575 0 1883416 species 0 species 1949203 1 575 Halomonas sp. 'Soap Lake #6' 0 species 1504981 822 Halomonas sp. KO116 1 0 species 1178482 1006 Halomonas huangheensis 1 genus 204286 11 1 0 2 1933 Cobetia 28258 species 0 1 Cobetia marina 1922 3188 Kushneria 3 1 0 genus 504090 26 1 1482 Kushneria konosiri species 698828 0 species 157779 0 1 1680 Kushneria marisflavi Salinicola 1986 2 0 1 404432 72 genus 0 species 1771309 1914 Salinicola tamaricis 1 42054 13 genus 0 1 2 Chromohalobacter 1361 1348 Chromohalobacter salexigens 1 species 158080 0 114403 no rank 0 170 3 1495768 genus 0 1 73 1495769 species 0 1 Candidatus Evansia muelleri 73 77 1 0 genus 235572 77 Candidatus Portiera aleyrodidarum 1 0 species 91844 0 114185 genus 20 1 species 114186 0 20 Candidatus Carsonella ruddii 1 376488 103 genus 0 1 Halotalea 1798 2 1 1695 Halotalea alkalilenta 0 species 376489 1651 Saccharospirillaceae 5 family 255527 4 1 0 0 1 2 1445504 genus 2 Gynuella 977 0 1445505 species Gynuella sunshinyii 975 1 1 0 genus 230494 2 670 Reinekea 2 1 668 Reinekea forsetii 0 species 1336806 3 1266 Hahellaceae 1 0 family 224379 1 158481 22 genus 0 1 Hahella 1265 2 0 158327 species 1 Hahella chejuensis 1243 13 Oceanospirillaceae 5533 135620 106 family 0 1 0 1 10 1537406 genus 2 Bacterioplanes 835 825 Bacterioplanes sanyensis 1 0 species 1249553 2 Oleispira 485 188907 7 genus 0 1 species 188908 0 478 Oleispira antarctica 1 0 1 187492 3 genus Thalassolituus 620 2 Thalassolituus oleivorans 617 1 0 187493 species 2 1722 Marinobacterium genus 48075 10 1 0 0 1821621 species 1 Marinobacterium aestuarii 1712 4 Marinomonas 1765 0 1 28253 9 genus Marinomonas mediterranea 633 1 0 119864 species 196814 no rank 0 1 569 400668 species 0 1 Marinomonas sp. MWYL1 569 936476 species 0 1 Marinomonas posidonica 554 9 Alcanivoracaceae 7607 224372 82 family 0 1 6 Alcanivorax 6465 0 1 168 59753 genus 1487 Alcanivorax xenomutans 1 0 species 1094342 520 1 0 2638842 no rank 0 1113728 species 1 Alcanivorax sp. NBRC 101098 520 1306787 species 0 Alcanivorax pacificus 1971 1 1 1867 Alcanivorax dieselolei species 285091 0 1 452 Alcanivorax borkumensis 0 species 59754 0 1 2025617 12 genus 2 Ketobacter 1060 1917421 species 0 Ketobacter alkanivorans 1048 1 family 2 191033 1 0 574 Oleiphilaceae 3 genus 141450 10 1 0 2 572 Oleiphilus species 141451 0 562 Oleiphilus messinensis 1 13224 Cellvibrionales 29 order 1706369 94 1 0 3565 Microbulbiferaceae 5 1 0 family 23 1706373 3542 Microbulbifer 4 1 0 genus 48073 31 0 species 1769779 1280 Microbulbifer aggregans 1 0 species 260552 1 899 Microbulbifer agarilyticus species 252514 0 1 1332 Microbulbifer thermotolerans Halieaceae 1770 4 1706372 48 family 0 1 0 1 60 1217416 genus 3 Halioglobus 1722 1 Halioglobus pacificus 845 930806 species 0 0 930805 species 1 Halioglobus japonicus 817 1 0 family 1706375 21 7 1826 Spongiibacteraceae 630749 8 genus 0 1 2 Spongiibacter 468 0 2631504 no rank 1 460 1 Spongiibacter sp. IMCC21906 460 0 1620392 species 2 Zhongshania 753 1434050 8 genus 0 1 Zhongshania aliphaticivorans 745 1 1470434 species 0 genus 1084558 8 1 0 2 584 Oceanicoccus 1 576 Oceanicoccus sagamiensis species 716816 0 family 1706371 39 1 0 5969 Cellvibrionaceae 12 0 1 10 42 genus 4 Cellvibrio 2946 0 2624793 no rank 2 1831 1987723 species 0 Cellvibrio sp. PSBB006 1066 1 Cellvibrio sp. PSBB023 765 1 0 1945512 species species 155077 0 1 1073 Cellvibrio japonicus 2 597 Teredinibacter 1 0 genus 9 2425 1 Teredinibacter turnerae 588 2426 species 0 Simiduia 941 2 0 1 8 447467 genus 1 933 Simiduia agarivorans 0 species 447471 2 Agarilytica 666 0 1 2036021 2 genus 1 Agarilytica rhodophyticola 664 0 1737490 species genus 316625 0 780 1 0 86304 species Saccharophagus degradans 780 1 no rank 33811 0 2905 2 1 1090 gamma proteobacterium HdN1 species 83406 0 1815 endosymbiont of unidentified scaly snail isolate Monju 1 0 species 1248727 Alteromonadales 55917 104 135622 251 order 0 1 1 0 family 12 267892 1760 Ferrimonadaceae 3 64 44011 genus 0 1 Ferrimonas 1748 2 0 44012 species 1 Ferrimonas balearica 1684 25 12082 Pseudoalteromonadaceae 1 0 family 267888 42 12040 Pseudoalteromonas 24 genus 540 53246 1 0 161398 species 0 Pseudoalteromonas phenolica 551 1 176102 species 0 1 Pseudoalteromonas agarivorans 430 314281 species 0 1 Pseudoalteromonas tunicata 592 species 394751 0 363 Pseudoalteromonas arctica 1 0 no rank 194690 2528 5 0 1514074 species Pseudoalteromonas sp. NC201 498 1 0 species 234831 1 350 Pseudoalteromonas sp. SM9913 Pseudoalteromonas sp. 1_2015MBL_MicDiv 524 1 0 1720343 species 580 Pseudoalteromonas sp. Bsw20308 1 0 species 283699 species 1761891 0 1 576 Pseudoalteromonas sp. 13-15 0 species 288 1 898 Pseudoalteromonas atlantica 0 267375 species 1 Pseudoalteromonas marina 270 species 28109 0 333 Pseudoalteromonas nigrifaciens 1 0 species 43659 1 367 Pseudoalteromonas tetraodonis 1 Pseudoalteromonas luteoviolacea 828 0 43657 species 247523 species 0 1 Pseudoalteromonas aliena 490 1 379 Pseudoalteromonas issachenkonii 0 species 152297 Pseudoalteromonas haloplanktis 266 1 228 species 0 0 166935 species Pseudoalteromonas translucida 216 1 Pseudoalteromonas rubra 704 1 0 43658 species 0 species 43662 1 553 Pseudoalteromonas piscicida Pseudoalteromonas espejiana 471 1 28107 species 0 0 species 298657 654 Pseudoalteromonas spongiae 1 1348114 species 0 1 Pseudoalteromonas piratica 607 Colwelliaceae 2807 9 5 267889 family 0 1 0 1 6 1518149 genus Thalassotalea 343 2 0 species 1763536 1 337 Thalassotalea crassostreae 7 28228 genus 0 1 Colwellia 2459 6 0 196834 no rank 1488 3 1 556 Colwellia sp. MT41 0 species 58049 0 1816218 species Colwellia sp. PAMC 20917 462 1 Colwellia sp. PAMC 21821 470 1 1816219 species 0 1 483 Colwellia beringensis 0 species 1967665 0 28229 species 1 Colwellia psychrerythraea 481 1 0 family 72275 147 30 21269 Alteromonadaceae Lacimicrobium 1190 2 8 1751872 genus 0 1 1 Lacimicrobium alkaliphilum 1182 0 1526571 species 10 11959 Marinobacter genus 2742 165 1 0 species 330734 0 1 881 Marinobacter psychrophilus 0 1420917 species Marinobacter salarius 1700 1 3645 3 83889 no rank 0 0 1749259 species Marinobacter sp. LQ44 1560 1 1 845 Marinobacter sp. BSs20148 species 490759 0 1671721 species 0 1 Marinobacter sp. CP1 1240 0 1874317 species 1 Marinobacter salinus 916 Marinobacter hydrocarbonoclasticus 2192 1 2743 species 0 Marinobacter adhaerens 1198 1 1033846 species 0 1420916 species 0 Marinobacter similis 1262 1 2 Paraglaciecola 729 1621534 1 genus 0 1 0 326544 species 1 Paraglaciecola psychrophila 728 1 0 genus 49 226 5430 Alteromonas 10 287094 species 0 1 Alteromonas addita 418 0 314275 species 1 Alteromonas mediterranea 887 589873 species 0 1 Alteromonas australica 419 28108 species 0 Alteromonas macleodii 1472 1 1 388 Alteromonas naphthalenivorans species 715451 0 no rank 2614992 0 1294 3 species 1917158 0 1 481 Alteromonas sp. RW2A1 Alteromonas sp. MB-3u-76 459 1 0 2058133 species species 1777491 0 1 354 Alteromonas sp. Mac1 0 species 233316 503 Alteromonas stellipolaris 1 0 1 261825 6 genus 2 Agarivorans 625 680279 species 0 Agarivorans gilvus 619 1 genus 1 89404 1 0 3 1189 Glaciecola 1 466 0 no rank 2618684 1 Glaciecola sp. 4H-3-7+YE-5 466 983545 species 0 722 Glaciecola nitratireducens 1 species 300231 0 family 267890 56 1 0 14781 Shewanellaceae 25 381 22 genus 0 1 24 Shewanella 14725 93973 species 0 Shewanella japonica 465 1 Shewanella baltica 1120 1 0 62322 species species 404011 0 1 406 Shewanella piezotolerans Shewanella psychrophila 555 1 0 225848 species species 192073 0 554 Shewanella denitrificans 1 1 Shewanella woodyi 912 60961 species 0 0 species 70863 668 Shewanella oneidensis 1 1 Shewanella marisflavi 594 260364 species 0 0 70864 species 1 Shewanella pealeana 584 0 2018305 species Shewanella bicestrii 501 1 Shewanella halifaxensis 700 1 271098 species 0 56812 species 0 1 Shewanella frigidimarina 536 1 1179 Shewanella amazonensis species 60478 0 606 Shewanella violacea 1 species 60217 0 271097 species 0 1 Shewanella sediminis 633 6 2825 no rank 196818 0 Shewanella sp. MR-7 412 1 0 60481 species 1 Shewanella sp. WE21 367 0 2029986 species 452 Shewanella sp. W3-18-1 1 0 species 351745 species 60480 0 449 Shewanella sp. MR-4 1 0 species 94122 1 629 Shewanella sp. ANA-3 1 516 Shewanella sp. Pdp11 species 2059264 0 species 359303 0 998 Shewanella loihica 1 1 Shewanella putrefaciens 508 0 24 species family 267894 0 3 895 895 Psychromonas 3 1 0 genus 15 67572 Psychromonas ingrahamii 519 1 357794 species 0 no rank 2614957 0 361 1 361 Psychromonas sp. CNPT3 1 0 species 314282 2 515 267891 family 0 genus 10 58050 1 0 2 515 Moritella Moritella viscosa 505 1 80854 species 0 6 1557 Idiomarinaceae 1 0 family 267893 13 0 1 6 135575 genus Idiomarina 1544 5 2 934 2614829 no rank 0 Idiomarina sp. X4 353 1 2055892 species 0 581 Idiomarina sp. OT37-5b 1 0 species 2100422 403 Idiomarina loihiensis 1 0 species 135577 Idiomarina piscisalsi 201 1 0 1096243 species 0 subphylum 68525 195 300966 class 29547 237 1 0 69 66460 Epsilonproteobacteria 931 3 order 235899 0 2795691 family 0 1 328 1 328 269258 genus 0 1 328 2624044 no rank 0 387092 species 0 1 Nitratiruptor sp. SB155-2 328 2 603 224467 family 0 2 Nautilia 603 0 1 191291 6 genus 1 597 Nautilia profundicola 0 species 244787 0 1 213849 3485 order Campylobacterales 65292 65 72294 6380 family 0 1 Campylobacteraceae 51083 41 Sulfurospirillum 4470 9 57665 25 genus 0 1 1 315 Sulfurospirillum deleyianum 0 species 65553 1 516 Sulfurospirillum halorespirans 0 species 194424 0 2618290 no rank 3 2064 species 1581011 0 722 Sulfurospirillum sp. UCH001 1 0 1986224 species 1 Sulfurospirillum sp. SL2-1 644 220622 species 0 Sulfurospirillum sp. JPD-1 698 1 44674 species 0 Sulfurospirillum barnesii 394 1 1 Sulfurospirillum multivorans 651 66821 species 0 1 Sulfurospirillum cavolei 505 0 366522 species 3966 5 no rank 2321108 0 0 2321207 no rank 955 1 0 944547 species Arcobacter sp. L 955 1 0 1 102 28196 genus 3 Arcobacter 2077 956 Arcobacter butzleri 1 species 28197 0 species 28199 0 1019 Arcobacter nitrofigilis 1 1 934 2321187 genus 0 Arcobacter sp. LPB0137 934 1 1850254 species 0 891 194 genus 0 1 Campylobacter 36267 26 260714 species 0 1 Campylobacter insulaenigrae 504 1 240 Campylobacter helveticus 0 species 28898 species 200 0 1 619 Campylobacter curvus 1 Campylobacter iguaniorum 443 0 1244531 species species 1965231 0 1 605 Campylobacter pinnipediorum 0 824 species 1 Campylobacter gracilis 763 species 522485 0 1 364 Campylobacter avium 198 species 0 1 Campylobacter hyointestinalis 687 4 1820 no rank 2593542 0 0 species 1500960 529 Campylobacter sp. RM16704 1 1 Campylobacter sp. RM12175 366 1660076 species 0 0 species 1660074 1 612 Campylobacter sp. RM8964 1660073 species 0 1 Campylobacter sp. RM6137 313 374106 species 0 1 Campylobacter cuniculorum 513 1106 Campylobacter concisus 1 species 199 0 76517 species 0 Campylobacter hominis 704 1 1 7054 Campylobacter jejuni species 197 0 1330 Campylobacter lanienae 1 species 75658 0 0 488546 species 1 Campylobacter peloridis 522 0 497724 species 1 Campylobacter subantarcticus 415 Campylobacter coli 13340 1 0 195 species species 201 0 1291 Campylobacter lari 1 562 Campylobacter ureolyticus 1 0 species 827 species 196 0 1178 Campylobacter fetus 1 1 460 Campylobacter volucris species 1031542 0 1 Campylobacter sputorum 856 206 species 0 72293 23 family 0 1 Helicobacteraceae 5804 14 0 1 209 7 genus 12 Helicobacter 5210 1 404 Helicobacter bilis 0 species 37372 0 212 species 1 Helicobacter acinonychis 111 213 species 0 Helicobacter cinaedi 256 1 76936 species 0 Helicobacter typhlonius 627 1 Helicobacter himalayensis 287 1 1591088 species 0 195 Helicobacter felis 1 species 214 0 32025 species 0 Helicobacter hepaticus 427 1 Helicobacter pylori 1987 1 210 species 0 2593540 no rank 0 1 237 0 222136 species Helicobacter sp. MIT 01-6242 237 1 0 138563 species 1 Helicobacter cetorum 428 species 217 0 244 Helicobacter mustelae 1 571 1 genus 843 0 1 Wolinella succinogenes 571 0 844 species 4 1770 0 family 2771471 1164 Sulfurimonas 3 genus 202746 1 1 0 1 Sulfurimonas denitrificans 352 39766 species 0 Sulfurimonas autotrophica 811 1 202747 species 0 606 1 0 286130 genus 1 Sulfuricurvum kujiense 606 148813 species 0 5 3150 0 2771472 family genus 269260 29 1 0 1202 Nitratifractor 2 1 Nitratifractor salsuginis 1173 0 269261 species Sulfurovum 1948 3 265570 9 genus 0 1 1 Sulfurovum lithotrophicum 1128 206403 species 0 2646778 no rank 0 1 811 387093 species 0 Sulfurovum sp. NBC37-1 811 1 28221 564 class 0 1 Deltaproteobacteria 234506 126 0 1 660 69541 order Desulfuromonadales 45307 24 9 15554 Desulfuromonadaceae 1 0 family 213421 339 18 113 genus 0 1 5 Pelobacter 9603 1 Pelobacter carbinolicus 1907 19 species 0 0 29542 species Pelobacter acetylenicus 2039 1 1 Pelobacter propionicus 3654 0 29543 species 1890 1 0 2620299 no rank 0 1842532 species 1 Pelobacter sp. SFB93 1890 1 0 genus 57 890 5612 Desulfuromonas 3 0 2614637 no rank 2853 1 1 2853 Desulfuromonas sp. DDH964 0 species 1823759 2702 Desulfuromonas soudanensis 1 0 species 1603606 family 231 213422 1 0 29093 Geobacteraceae 14 2 Geoalkalibacter 2271 0 1 20 392332 genus 1 Geoalkalibacter subterraneus 2251 0 483547 species Geobacter 26591 11 28231 364 genus 0 1 0 225194 species 1 Geobacter bemidjiensis 3097 0 species 313985 1 2520 Geobacter lovleyi 0 35554 species Geobacter sulfurreducens 2247 1 1 Geobacter pickeringii 2444 345632 species 0 0 28232 species Geobacter metallireducens 2245 1 1340425 species 0 Geobacter anodireducens 2834 1 1 2036 Geobacter uraniireducens 0 species 351604 2 7004 2627627 no rank 0 1 Geobacter sp. M21 3096 0 443144 species 0 species 443143 3908 Geobacter sp. M18 1 1203471 species 0 Geobacter daltonii 1800 1 4 Desulfarculales 4017 0 1 56 453227 order 1 0 family 453228 108 3961 Desulfarculaceae 3 3853 Desulfarculus 2 1 0 genus 453229 28 Desulfarculus baarsii 3825 1 0 453230 species 0 1 213118 117 order 19 Desulfobacterales 15448 Desulfobulbaceae 7502 9 213121 13 family 0 1 Desulfobulbus 3167 2 30 893 genus 0 1 Desulfobulbus sp. ORNL 3137 1 0 1986146 species 906 Desulfocapsa 2 1 0 genus 53318 6 species 65555 0 1 900 Desulfocapsa sulfexigens 1 0 genus 109168 2 2 824 Desulfotalea 822 Desulfotalea psychrophila 1 species 84980 0 Desulfurivibrio 2592 2 0 1 13 427922 genus species 427923 0 1 2579 Desulfurivibrio alkaliphilus Desulfobacteraceae 7829 9 213119 67 family 0 1 2 Desulfatibacillum 1977 218207 13 genus 0 1 Desulfatibacillum alkenivorans 1964 1 259354 species 0 1 997 genus 28222 0 1 997 Desulfobacula toluolica species 28223 0 3 3484 Desulfococcus 1 0 genus 25 896 0 897 species 1 Desulfococcus multivorans 1682 0 181663 species 1 Desulfococcus oleovorans 1777 0 1 2295 5 genus 2 Desulfobacterium 1304 2296 species 0 Desulfobacterium autotrophicum 1299 1 26 Desulfovibrionales 83568 700 213115 order 0 1 1 0 family 213117 11 1391 Desulfohalobiaceae 3 genus 45662 2 1 0 1380 Desulfohalobium 2 0 45663 species 1 Desulfohalobium retbaense 1378 6598 Desulfomicrobiaceae 4 family 213116 144 1 0 genus 49 898 1 0 3 6454 Desulfomicrobium species 899 0 3504 Desulfomicrobium baculatum 1 132132 species 0 Desulfomicrobium orale 2901 1 1 0 family 194924 500 74879 Desulfovibrionaceae 18 Lawsonia 921 2 0 1 41707 46 genus species 29546 0 875 Lawsonia intracellularis 1 11074 Pseudodesulfovibrio 4 1 0 genus 2035811 154 57320 species 0 Pseudodesulfovibrio profundus 1655 1 1 Pseudodesulfovibrio aespoeensis 3872 0 182210 species 0 species 1716143 1 5393 Pseudodesulfovibrio indicus 2212 1 0 2794998 genus 2212 Desulfovibrio salexigens 1 0 species 880 3561 1 genus 2582840 0 species 873 0 1 3561 Desulfovibrio africanus Desulfovibrio 56611 9 872 591 genus 0 1 1 4162 no rank 2593640 0 631220 species 0 Desulfovibrio sp. G11 4162 1 species 1725232 0 1 2130 Candidatus Desulfovibrio trichonymphae 1 5500 Desulfovibrio magneticus 0 species 184917 1 11259 Desulfovibrio piger species 901 0 species 876 0 9866 Desulfovibrio desulfuricans 1 1 Desulfovibrio fairfieldensis 8235 0 44742 species species 881 0 11880 Desulfovibrio vulgaris 1 species 58180 0 1 2988 Desulfovibrio alaskensis 1 0 order 29 1055 79926 Myxococcales 38 0 suborder 224462 3 4262 4262 Kofleriaceae 3 1 0 family 224464 56 2 Haliangium 4206 162027 76 genus 0 1 80816 species 0 Haliangium ochraceum 4130 1 60442 26 80811 suborder 0 family 1524215 133 1 0 5 11884 Anaeromyxobacteraceae 1 0 genus 161492 184 4 11751 Anaeromyxobacter 0 no rank 2620896 2 5960 0 species 404589 2741 Anaeromyxobacter sp. Fw109-5 1 1 Anaeromyxobacter sp. K 3219 0 447217 species Anaeromyxobacter dehalogenans 5607 1 0 161493 species family 154 31 1 0 9 28029 Myxococcaceae 1 0 genus 193 83461 3 9312 Corallococcus species 35 0 1 4046 Myxococcus macrosporus 5073 Corallococcus coralloides 1 species 184914 0 Myxococcus 18563 5 0 1 32 750 genus species 33 0 7565 Myxococcus fulvus 1 1 Myxococcus stipitatus 3371 83455 species 0 3380 Myxococcus xanthus 1 species 34 0 0 species 1297742 3497 Myxococcus hansupus 1 0 1 39 441 family 9 Archangiaceae 17550 genus 32 40 1 0 3818 Stigmatella 2 0 41 species 1 Stigmatella aurantiaca 3786 2 4505 Archangium 1 0 genus 47 111 1 Archangium gephyra 4394 0 48 species 0 1 50 44 genus Melittangium 4129 2 Melittangium boletus 4079 1 83453 species 0 2 Cystobacter 4657 28 42 genus 0 1 43 species 0 1 Cystobacter fuscus 4629 3 Vulgatibacteraceae 2979 0 1 1524213 94 family 1 0 genus 61 1524214 2 2885 Vulgatibacter 1391653 species 0 1 Vulgatibacter incomptus 2824 8 14167 80812 suborder 0 0 1 82 49 family Polyangiaceae 11297 5 genus 50 4 1 0 2369 Chondromyces 2 1 2365 Chondromyces crocatus species 52 0 2 Sorangium 8846 57 39643 genus 0 1 0 species 56 1 8789 Sorangium cellulosum 3 Sandaracinaceae 2870 1055686 19 family 0 1 Sandaracinus 2851 2 43 1055688 genus 0 1 1 Sandaracinus amylolyticus 2808 0 927083 species 9 4786 Syntrophobacterales order 17 213462 1 0 213465 25 family 0 1 3 Syntrophobacteraceae 1947 0 1 29526 10 genus 2 Syntrophobacter 1922 119484 species 0 Syntrophobacter fumaroxidans 1912 1 17 213468 family 0 1 5 Syntrophaceae 2822 1227 Syntrophus 2 genus 43773 15 1 0 316277 species 0 Syntrophus aciditrophicus 1212 1 1001 1 0 60892 genus species 60893 0 1001 Desulfobacca acetoxidans 1 genus 2357 0 577 1 Desulfomonile tiedjei 577 1 2358 species 0 order 14 213113 1 0 890 Desulfurellales 5 4 876 0 117942 family Hippea 362 2 4 84404 genus 0 1 Hippea maritima 358 1 84405 species 0 2 Desulfurella 514 33001 7 genus 0 1 0 33002 species Desulfurella acetivorans 507 1 577945 Betaproteobacteria 351 1 0 class 28216 1202 2260 2 no rank 33809 0 beta proteobacterium CB 307 1 0 543913 species 1953 Betaproteobacteria bacterium GR16-43 1 species 1904640 0 36 Neisseriales 44814 0 1 206351 727 order 22311 Neisseriaceae 22 family 243 481 1 0 Neisseria 17308 12 645 482 genus 0 1 3725 Neisseria meningitidis 1 species 487 0 0 no rank 2623750 3267 2 species 1853276 0 788 Neisseria sp. 10022 1 Neisseria sp. KEM232 2479 1 0 655307 species 1800 Neisseria lactamica 1 species 486 0 1853278 species 0 Neisseria sp. 10023 1321 1 Neisseria mucosa 1106 1 488 species 0 Neisseria sicca 1367 1 0 490 species 28091 species 0 Neisseria weaveri 836 1 1 978 Neisseria gonorrhoeae species 485 0 326523 species 0 Neisseria zoodegmatis 970 1 1293 Neisseria elongata 1 species 495 0 0 421605 no rank 350 1 species 2052837 0 1 350 Neisseriaceae bacterium DSM 100970 1468 Eikenella 2 1 0 genus 538 87 1381 Eikenella corrodens 1 0 species 539 721 1 0 genus 1193515 1 721 Snodgrassella alvi 0 species 1196083 2 Simonsiella 429 1 71 genus 0 1 0 species 72 1 428 Simonsiella muelleri 3 Vitreoscilla 1792 42 59 genus 0 1 1 372 2627922 no rank 0 1 372 Vitreoscilla sp. C1 0 species 96942 0 species 63 1 1378 Vitreoscilla filiformis 0 1 1499392 304 family Chromobacteriaceae 21776 13 2855 Laribacter 2 genus 168470 39 1 0 1 Laribacter hongkongensis 2816 168471 species 0 genus 187 28 1 0 2263 Aquaspirillum 2 no rank 2620219 0 1 2235 1 Aquaspirillum sp. LM1 2235 1938604 species 0 0 1 568394 38 genus 2 Pseudogulbenkiania 2708 1 2670 0 no rank 2642558 Pseudogulbenkiania sp. NH8B 2670 1 0 748280 species 11570 4 90153 no rank 0 genus 203 535 1 0 4 11570 Chromobacterium 4758 Chromobacterium vaccinii 1 0 species 1108595 3339 1 0 2641838 no rank Chromobacterium sp. ATCC 53434 3339 1 0 2059672 species 1 3270 Chromobacterium violaceum 0 species 536 2 Jeongeupia 2076 0 1 885864 56 genus 0 2619593 no rank 1 2020 2020 Jeongeupia sp. USM3 1 0 species 1906741 32003 190 order 0 1 44 Nitrosomonadales 22741 1 0 family 115 2008793 4611 Sterolibacteriaceae 5 Sulfuritalea 2333 2 1054211 89 genus 0 1 Sulfuritalea hydrogenivorans 2244 1 0 748811 species 2 Methyloversatilis 2163 0 1 378210 40 genus 1 2123 2639971 no rank 0 1 2123 Methyloversatilis sp. RAC08 0 species 1842540 Gallionellaceae 2484 5 0 1 84 90627 family genus 37 314343 1 0 1463 Sideroxydans 2 1426 Sideroxydans lithotrophicus 1 species 63745 0 937 Gallionella 2 1 0 genus 96 21 0 species 370405 1 916 Gallionella capsiferriformans Nitrosomonadaceae 6435 12 30 206379 family 0 1 4 Nitrosospira 2606 35798 6 genus 0 1 0 1231 species 1 Nitrosospira multiformis 670 0 1288494 species 1 Nitrosospira lacus 948 0 35799 species 1 Nitrosospira briensis 982 3799 Nitrosomonas 7 1 0 genus 14 914 0 no rank 2609265 1007 2 Nitrosomonas sp. Is79A3 537 1 261292 species 0 153948 species 0 1 Nitrosomonas sp. AL212 470 species 915 0 1 987 Nitrosomonas europaea 916 species 0 Nitrosomonas eutropha 493 1 1 827 Nitrosomonas communis 0 species 44574 0 species 44577 471 Nitrosomonas ureae 1 14 5104 Methylophilaceae family 32011 43 1 0 1 0 genus 3 1679002 3 621 Candidatus Methylopumilus species 1581680 0 281 Candidatus Methylopumilus turicensis 1 1581557 species 0 Candidatus Methylopumilus planktonicus 337 1 Methylovorus 2192 3 53 81682 genus 0 1 species 266009 0 1 975 Methylovorus glucosotrophus 2634027 no rank 0 1 1164 1164 Methylovorus sp. MP688 1 0 species 887061 404 9 genus 0 1 2 Methylobacillus 862 species 405 0 1 853 Methylobacillus flagellatus 0 1 1 16 genus Methylophilus 535 2 no rank 2630143 0 534 1 1662285 species 0 Methylophilus sp. TWE2 534 1 1 0 genus 359407 50 851 Methylotenera 3 1 497 Methylotenera versatilis 0 species 1055487 Methylotenera mobilis 304 1 0 359408 species family 2008790 23 1 0 1423 Thiobacillaceae 3 0 1 919 23 genus Thiobacillus 1400 2 species 36861 0 1377 Thiobacillus denitrificans 1 0 family 2772226 4 2494 0 1 22 935200 genus Sulfuricella 1162 2 0 649841 species 1 Sulfuricella denitrificans 1140 Sulfuriferula 1332 2 1778653 6 genus 0 1 0 no rank 2637784 1326 1 1 1326 Sulfuriferula sp. AH1 species 1985873 0 11 3184 119066 no rank 0 0 1381133 genus 144 1 144 Candidatus Profftella armatura 1 0 species 669502 0 1301080 genus 31 1 1 31 Candidatus Nasuia deltocephalinicola 0 species 1160784 genus 327159 28 1 0 1857 Candidatus Accumulibacter 2 1 Candidatus Accumulibacter phosphatis 1829 327160 species 0 1 57 189384 genus 0 0 189385 species Candidatus Tremblaya princeps 57 1 1 0 genus 33055 23 6 1095 Kinetoplastibacterium 228 Candidatus Kinetoplastibacterium crithidii 1 0 species 33056 1 Candidatus Kinetoplastibacterium galatii 193 994695 species 0 Kinetoplastibacterium blastocrithidii 254 1 0 233181 species 255 Candidatus Kinetoplastibacterium desouzaii 1 species 994692 0 Candidatus Kinetoplastibacterium oncopeltii 142 1 994696 species 0 Rhodocyclales 30596 22 0 1 493 206389 order 6 Rhodocyclaceae 6708 0 1 196 75787 family 2 Aromatoleum 1541 0 1 19 551759 genus 1 1522 Aromatoleum aromaticum species 551760 0 2 Azospira 3293 0 1 74 146937 genus Azospira oryzae 3219 1 0 146939 species no rank 75788 0 1678 1 Rhodocyclaceae bacterium 1678 1 1898103 species 0 3 Azonexaceae 1605 0 1 21 2008795 family 22 73029 genus 0 1 Dechloromonas 1584 2 0 species 259537 1562 Dechloromonas aromatica 1 587 2008794 family 0 1 12 Zoogloeaceae 21790 0 1 12960 316 genus 5 Azoarcus 8866 1708 Azoarcus sp. SY39 1 0 species 2067960 4706 2 0 2629479 no rank 1 Azoarcus sp. KH32C 2411 0 748247 species 198107 species 0 1 Azoarcus sp. CIB 2295 0 species 418699 1 2136 Azoarcus olearius Thauera 12337 6 396 33057 genus 0 1 0 96773 species 1 Thauera chlorobenzoica 1891 2 5860 no rank 2609274 0 0 species 2005884 2878 Thauera sp. K11 1 Thauera sp. MZ1T 2982 1 0 85643 species 1 2178 Thauera humireducens 0 species 1134435 59405 species 0 1 Thauera aromatica 2012 473148 Burkholderiales 235 1 0 order 5250 80840 85887 Alcaligenaceae 43 1 0 family 684 506 Paenalcaligenes 745 2 8 1100891 genus 0 1 Paenalcaligenes hominis 737 1 0 643674 species Basilea 749 2 4 1472344 genus 0 1 745 Basilea psittacipulmonis 1 0 species 1472345 0 1 305976 6 genus 2 Pusillimonas 1332 1326 1 0 no rank 2640016 1326 Pusillimonas sp. T7-7 1 species 1007105 0 genus 1586 517 1 0 17 38672 Bordetella species 463014 0 2076 Bordetella flabilis 1 0 species 463025 2747 Bordetella bronchialis 1 0 species 463024 2631 Bordetella genomosp. 6 1 species 35814 0 1 978 Bordetella holmesii 0 species 1416806 1 2355 Bordetella genomosp. 8 519 species 0 1 Bordetella parapertussis 2538 1892 Bordetella petrii 1 species 94624 0 Bordetella pertussis 2021 1 520 species 0 0 521 species Bordetella avium 1276 1 1 Bordetella genomosp. 9 2183 1416803 species 0 1 Bordetella pseudohinzii 2363 0 1331258 species 1 Bordetella trematum 2217 123899 species 0 Bordetella genomosp. 13 2467 1 463040 species 0 Bordetella hinzii 2685 1 103855 species 0 1 1943 0 2630031 no rank species 1697043 0 1 1943 Bordetella sp. H567 4714 Bordetella bronchiseptica 1 species 518 0 31 507 genus 0 1 Alcaligenes 3300 2 1 Alcaligenes faecalis 3269 511 species 0 1 0 genus 1921582 75 2953 Orrella 2 1 2878 Orrella dioscoreae species 1851544 0 2 552 Oligella genus 4 90243 1 0 548 Oligella urethralis 1 0 species 90245 1 0 genus 290425 5 2030 Advenella 3 species 310575 0 947 Advenella kashmirensis 1 Advenella mimigardefordensis 1078 1 0 302406 species 0 genus 29574 682 2 1 Taylorella equigenitalis 333 29575 species 0 84590 species 0 Taylorella asinigenitalis 349 1 222 1227 genus 0 1 6 Achromobacter 31188 Achromobacter insolitus 2624 1 0 217204 species 1 3647 0 2626865 no rank Achromobacter sp. AONIH1 3647 1 0 1758194 species 5189 Achromobacter spanius 1 species 217203 0 32002 species 0 Achromobacter denitrificans 6630 1 0 species 85698 11871 Achromobacter xylosoxidans 1 112 359336 genus 0 1 2 Castellaniella 3000 1 Castellaniella defragrans 2888 75697 species 0 1 0 family 544 75682 61329 Oxalobacteraceae 29 1 0 genus 846 3 11081 Oxalobacter 2 11078 Oxalobacter formigenes 1 0 species 847 149698 494 genus 0 1 Massilia 15004 6 species 1141883 0 1 3100 Massilia putida Massilia sp. ZMN-3 3339 1 0 2072590 species 0 no rank 2609279 2 5950 1 3163 Massilia sp. NR 4-1 species 1678028 0 1 2787 Massilia sp. WG5 species 1707785 0 0 species 2045208 2121 Massilia sp. B2 1 6 13068 Herbaspirillum 1 0 genus 963 592 1 2963 Herbaspirillum seropedicae species 964 0 Herbaspirillum rubrisubalbicans 2616 1 80842 species 0 1 1940 Herbaspirillum hiltneri species 341045 0 1 3418 Herbaspirillum frisingense 0 species 92645 0 2624150 no rank 1 1539 Herbaspirillum sp. meg3 1539 1 2025949 species 0 4 8181 Collimonas genus 202907 204 1 0 0 158899 species 1 Collimonas fungivorans 2567 279058 species 0 1 Collimonas arenae 2683 0 279113 species 1 Collimonas pratensis 2727 0 1 29580 185 genus 7 Janthinobacterium 12149 0 species 368607 1 2554 Janthinobacterium svalbardensis 1 2003 Janthinobacterium agaricidamnosum species 55508 0 7407 4 2610881 no rank 0 0 375286 species 1 Janthinobacterium sp. Marseille 946 1 Janthinobacterium sp. B9-8 806 0 1236179 species 1 Janthinobacterium sp. LM6 2510 1938606 species 0 Janthinobacterium sp. 1_2014MBL_MicDiv 3145 1 1644131 species 0 1302 Herminiimonas 3 genus 303379 46 1 0 species 204773 0 699 Herminiimonas arsenicoxydans 1 species 1809410 0 557 Herminiimonas arsenitoxidans 1 0 80841 no rank 2 4177 0 1834205 species Burkholderiales bacterium YL45 2760 1 1469502 species 0 Burkholderiales bacterium GJ-E10 1417 1 84 177553 Burkholderiaceae family 119060 1270 1 0 1822464 579 genus 0 1 Paraburkholderia 23418 12 0 311230 species Paraburkholderia terrae 1755 1 2186 Paraburkholderia sprentiae 1 species 948107 0 no rank 2615204 0 1 1902 1 1902 Paraburkholderia sp. SOS3 0 species 1926494 1798 Paraburkholderia phenoliruptrix 1 species 252970 0 1 3056 Paraburkholderia caribensis species 75105 0 Paraburkholderia phymatum 2054 1 0 148447 species 0 species 134537 1850 Paraburkholderia fungorum 1 1 1758 Paraburkholderia phytofirmans species 261302 0 0 species 36873 1 2437 Paraburkholderia xenovorans 2026199 species 0 1 Paraburkholderia aromaticivorans 2135 1 1908 Paraburkholderia hospita 0 species 169430 1827195 genus 0 2027 1 species 758793 0 2027 Burkholderia sp. RPE64 1 1 0 genus 418 93217 14180 Pandoraea 10 93218 species 0 Pandoraea apista 1320 1 1333 Pandoraea sputorum 1 species 93222 0 1 1474 Pandoraea vervacti species 656178 0 1 1390 Pandoraea norimbergensis 0 species 93219 species 656179 0 1366 Pandoraea faecigallinarum 1 1 Pandoraea thiooxydans 1428 445709 species 0 species 93220 0 1 1841 Pandoraea pnomenusa 1 Pandoraea pulmonicola 1626 93221 species 0 1984 Pandoraea oxalativorans 1 0 species 573737 0 1 537 48736 genus Ralstonia 19664 5 1 Ralstonia mannitolilytica 2984 105219 species 0 1 Ralstonia pickettii 4513 0 329 species 1 Ralstonia solanacearum 8573 305 species 0 species 190721 0 3057 Ralstonia insidiosa 1 0 1 32008 4706 genus Burkholderia 88691 41 1 Burkholderia gladioli 4164 28095 species 0 0 no rank 2613784 16478 11 Burkholderia sp. HB1 1783 1 1678678 species 0 Burkholderia sp. Bp7605 1574 1 1740163 species 0 0 640512 species Burkholderia sp. CCGE1003 1514 1 species 1740162 0 1 1110 Burkholderia sp. Bp5365 0 416344 species Burkholderia sp. KJ006 1237 1 0 640510 species 1 Burkholderia sp. CCGE1001 1666 1 Burkholderia sp. RPE67 2015 0 758796 species 1 Burkholderia sp. PAMC 28687 1196 0 1795874 species 1 Burkholderia sp. PAMC 26561 1219 1795043 species 0 1 1198 Burkholderia sp. 2002721687 species 1468409 0 0 1097668 species Burkholderia sp. YI23 1966 1 0 111527 species group 7 12604 1 1204 Burkholderia sp. MSMB0852 species 1637841 0 1 Burkholderia thailandensis 2960 57975 species 0 1 3606 Burkholderia pseudomallei species 28450 0 Burkholderia sp. MSMB0266 1100 1 1637837 species 0 1 Burkholderia mallei 1083 0 13373 species 342113 species 0 Burkholderia oklahomensis 1636 1 1637831 species 0 Burkholderia sp. MSMB617WGS 1015 1 0 41899 species 1 Burkholderia plantarii 2422 1 Burkholderia glumae 4237 337 species 0 87882 species group 0 44080 19 Burkholderia vietnamiensis 2101 1 60552 species 0 0 species 152500 1357 Burkholderia dolosa 1 species 292 0 7818 Burkholderia cepacia 1 0 species 488731 1179 Burkholderia seminalis 1 0 species 152480 1759 Burkholderia ambifaria 1 0 60550 species Burkholderia pyrrocinia 1017 1 Burkholderia latens 1105 1 0 488446 species 2036 Burkholderia lata 1 species 482957 0 [Pseudomonas] mesoacidophila 1150 1 265293 species 0 1 Burkholderia cenocepacia 7173 95486 species 0 1312 Burkholderia contaminans 1 0 species 488447 488729 species 0 Burkholderia metallica 1133 1 95485 species 0 1 Burkholderia stabilis 2205 488732 species 0 Burkholderia diffusa 1145 1 0 1207504 species 1 Burkholderia pseudomultivorans 1478 87883 species 0 Burkholderia multivorans 3460 1 1535 Burkholderia stagnalis 1 0 species 1503054 Burkholderia territorii 1040 1 1503055 species 0 4077 Burkholderia ubonensis 1 0 species 101571 Polynucleobacter 1250 4 3 44013 genus 0 1 0 1835254 species Polynucleobacter duraquae 364 1 0 576611 species Polynucleobacter asymbioticus 413 1 1 Polynucleobacter necessarius 470 0 576610 species 785 1 2571159 genus 0 0 412963 species Paraburkholderia rhizoxinica 785 1 106589 1007 genus 0 1 Cupriavidus 26268 9 species 82541 0 1 2570 Cupriavidus gilardii Cupriavidus metallidurans 2439 1 119219 species 0 2640874 no rank 0 6489 2 0 1389192 species Cupriavidus sp. USMAHM13 3192 1 1 3297 Cupriavidus sp. USMAA2-4 species 876364 0 Cupriavidus necator 5155 1 0 106590 species 68895 species 0 1 Cupriavidus basilensis 2583 0 species 367825 1 3135 Cupriavidus sp. USMAA1020 0 248026 species 1 Cupriavidus pinatubonensis 2890 112034 Comamonadaceae 59 1 0 family 80864 2106 1 0 genus 28065 73 5 7735 Rhodoferax 0 species 192843 1581 Rhodoferax ferrireducens 1 0 species 1484693 1724 Rhodoferax saidenbachensis 1 0 81479 species Rhodoferax antarcticus 1733 1 species 1842727 0 1 2624 Rhodoferax koreense 1 0 genus 335 34072 15745 Variovorax 5 436515 species 0 Variovorax boronicumulans 3007 1 Variovorax paradoxus 7094 1 0 34073 species 663243 no rank 0 2 5309 1 1746 Variovorax sp. PAMC 28711 0 species 1795631 species 2126319 0 1 3563 Variovorax sp. PMC12 1 0 genus 364316 9 2 2252 Verminephrobacter 1 2243 Verminephrobacter eiseniae 0 species 364317 2 Ramlibacter 5427 0 1 75 174951 genus 5352 Ramlibacter tataouinensis 1 0 species 94132 2832 2 genus 2490452 0 Comamonadaceae bacterium B1 1514 1 1458426 species 0 0 species 1458425 1318 Comamonadaceae bacterium A1 1 genus 82 1649468 1 0 2737 Melaminivora 2 2655 1 0 2641902 no rank 0 2109913 species Melaminivora sp. SC2-9 2655 1 1 0 genus 47420 110 4 7287 Hydrogenophaga 2 5336 0 no rank 2610897 Hydrogenophaga sp. PBC 3121 1 0 795665 species 1 2215 Hydrogenophaga sp. RAC07 species 1842537 0 0 species 1763535 1 1841 Hydrogenophaga crassostreae genus 665874 7 1 0 1684 Limnohabitans 3 1677 2 0 no rank 2626134 1 Limnohabitans sp. 103DPR2 578 1678129 species 0 0 1678128 species Limnohabitans sp. 63ED37-2 1099 1 2447 Diaphorobacter 2 genus 238749 23 1 0 2424 Diaphorobacter polyhydroxybutyrativorans 1 species 1546149 0 1 0 genus 12916 813 9 19866 Acidovorax 1761 Acidovorax sp. NA3 1 0 species 553814 0 no rank 2684926 4 9368 species 358220 0 1 2656 Acidovorax sp. KKS102 Acidovorax sp. RAC01 2329 1 0 1842533 species 2590 Acidovorax sp. JS42 1 species 232721 0 1 Acidovorax sp. T1 1793 1858609 species 0 0 80867 species Acidovorax avenae 2838 1 species 80869 0 2777 Acidovorax citrulli 1 Acidovorax ebreus 2309 1 721785 species 0 1 0 genus 9 1436289 938 Candidatus Symbiobacter 2 Candidatus Symbiobacter mobilis 929 1 1436290 species 0 1588 Simplicispira 2 1 0 genus 12 352450 species 2109915 0 1 1576 Simplicispira sp. SC1-8 1 0 genus 42 201096 2 3462 Alicycliphilus 1 3420 Alicycliphilus denitrificans 0 species 179636 0 1 104 283 genus Comamonas 9807 4 1 2348 Comamonas kerstersii 0 species 225992 2895 Comamonas serinivorans 1 0 species 1082851 Comamonas testosteroni 4460 1 0 285 species 0 2678886 genus 2574 1 species 2116657 0 1 2574 Melaminivora sp. SC2-7 4332 Polaromonas 3 1 0 genus 60 52972 216465 species 0 1 Polaromonas naphthalenivorans 2381 1 1891 2638319 no rank 0 0 296591 species Polaromonas sp. JS666 1891 1 1 0 genus 219181 18 3 4470 Ottowia Ottowia sp. KADR8-3 2388 1 0 2109914 species 0 2645081 no rank 2064 1 0 species 1658672 1 2064 Ottowia sp. oral taxon 894 14745 Delftia 5 genus 563 80865 1 0 species 80866 0 1 3465 Delftia acidovorans 0 no rank 2613839 2 7245 1 Delftia sp. Cs1-4 3849 0 742013 species 3396 Delftia sp. HK171 1 0 species 1920191 3472 Delftia tsuruhatensis 1 0 species 180282 26918 17 no rank 224471 0 3262 Rubrivivax 2 1 0 genus 28067 186 1 3076 Rubrivivax gelatinosus species 28068 0 0 1 178 212743 genus 2 Rhizobacter 3431 species 946333 0 3253 Rhizobacter gummiphilus 1 1 2747 [Polyangium] brachysporum species 413882 0 0 1 93681 84 genus Roseateles 3526 2 Roseateles depolymerans 3442 1 0 76731 species genus 82 88 1 0 2827 Leptothrix 2 0 species 34029 2745 Leptothrix cholodnii 1 genus 316612 82 1 0 2 2339 Methylibium 105560 species 0 Methylibium petroleiphilum 2257 1 2678 Mitsuaria 2 1 0 genus 127 65047 1 2551 no rank 2648776 0 species 1658665 0 1 2551 Mitsuaria sp. 7 32012 62 genus 0 1 2 Thiomonas 3534 1 Thiomonas intermedia 3472 926 species 0 genus 318147 68 1 0 2 2574 Paucibacter 1 2506 no rank 2642959 0 1 Paucibacter sp. KCTC 42545 2506 0 1768242 species 0 1 14 1553900 class Oligoflexia 4716 9 1 0 order 2 2024979 1650 Bacteriovoracales 3 733 1 0 family 1652132 733 1 genus 1652133 0 97084 species 0 Halobacteriovorax marinus 733 1 1 915 263369 family 0 0 146784 genus 915 1 0 species 960 915 Bacteriovorax stolpii 1 0 1 28 213481 order Bdellovibrionales 3052 5 0 1 13 213483 family Bdellovibrionaceae 3024 4 3 3011 Bdellovibrio 1 0 genus 27 958 359 Bdellovibrio exovorus 1 0 species 453816 0 959 species Bdellovibrio bacteriovorus 2625 1