members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4052601 29 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4058 4550 2157 0 20699 superkingdom 274 17 0 1783276 1 clade 1801631 0 17 phylum 1 2490204 0 17 1 genus Candidatus Micrarchaeota archaeon Mia14 species 1 17 0 1920749 217 phylum 17277 28890 0 2290931 0 8701 103 clade 183963 0 1 4971 54 class 15 Halobacteria 2 Halobacteriales 21 order 847 1 0 2235 313 2236 0 7 family genus 2 3 Halodesulfurarchaeum 0 1980514 35 1 Halodesulfurarchaeum formicicum species 1 32 1873524 0 198 2239 0 genus 3 0 2668073 73 no rank 1 73 751944 0 Halobacterium sp. DL1 species 1 2242 0 57 1 species Halobacterium salinarum 1407499 0 68 1 species Halobacterium hubeiense 1656823 0 35 genus 1 Halanaeroarchaeum sulfurireducens 1 species 35 0 1604004 genus 1 45 0 332246 species 1 Halalkalicoccus jeotgali 0 413810 45 1 Haloarculaceae 13 family 1 532 1963268 0 0 63743 101 genus 2 species 1 Natronomonas pharaonis 2257 0 44 416273 0 57 1 species Natronomonas moolapensis 5 Haloarcula 5 genus 205 1 2237 0 0 51589 45 species 1 Haloarcula hispanica 50 2238 0 Haloarcula marismortui species 1 0 2624677 61 1 no rank 61 0 1592728 Haloarcula sp. CBA1115 species 1 0 1932004 44 species 1 Haloarcula taiwanensis 2 Halorientalis 2 genus 55 1 0 1073987 no rank 1 0 2648975 53 Halorientalis sp. IM1011 species 1 53 0 1932360 genus 2 146825 0 105 Halorhabdus utahensis 1 species 49 146826 0 Halorhabdus tiamatea species 1 56 0 430914 genus 1 65 203135 0 0 57705 65 1 species Halomicrobium mukohataei 0 1644060 1 2103 14 order Natrialbales 16 family 13 1644061 0 2087 2 Natrinema genus 3 1 122 88723 0 2622230 0 60 no rank 1 Natrinema sp. J7-2 1 species 60 0 406552 60 0 69525 Natrinema pellirubrum species 1 genus 1 67 0 2256 44930 0 67 species 1 Natronobacterium gregoryi 85 29287 0 1 genus 85 0 29288 Natronococcus occultus 1 species 1 genus 1269201 0 54 0 2621923 54 1 no rank 54 0 1333523 Salinarchaeum sp. Harcht-Bsk1 1 species 1 genus 46 353799 0 46 353800 0 Halostagnicola larsenii 1 species 1 genus 63742 0 1205 0 13769 1205 1 species Natrialba magadii genus 1 0 203193 156 1 species Halobiforma lacisalsi 0 229731 156 genus 2 254 0 121871 1 species Haloterrigena turkmenica 0 62320 98 Haloterrigena daqingensis 1 species 156 0 588898 0 387342 98 1 genus 2 1 Halopiger Halopiger xanaduensis species 1 97 0 387343 2006 1 1644055 0 Haloferacales 24 18 order 1644056 0 1 1535 9 family 3 Haloferacaceae genus 2 3 Halogeometricum 0 60846 1 51 48 60847 0 Halogeometricum borinquense species 1 Haloferax 2 4 genus 1 317 0 2251 0 2252 66 species 1 Haloferax mediterranei 123 2246 0 Haloferax volcanii species 1 Haloferax gibbonsii species 1 126 35746 0 0 293431 1 1164 genus 2 Haloquadratum 4 1160 293091 0 Haloquadratum walsbyi 1 species 1963271 0 1 360 7 family Halorubraceae 3 1 72 0 1209988 1 Halopenitus 2 genus 1048396 0 71 species 1 Halopenitus persicus 1 143 0 56688 Halorubrum 1 3 genus Halorubrum lacusprofundi 1 species 53 2247 0 species 1 Halorubrum trapanicum 29284 0 89 1644057 0 142 genus 1 species 1 Salinigranum rubrum 755307 0 142 no rank 1 0 2678336 87 halophilic archaeon DL31 1 species 87 756883 0 224756 0 3730 1 49 class 4 Methanomicrobia 166 570264 0 3 order family 3 166 0 570265 1 166 0 570266 Methanocella 5 genus 3 104 1175445 0 Methanocella arvoryzae species 1 Methanocella conradii species 1 57 0 1175444 order 18 Methanomicrobiales 5 2191 0 473 1 1 210 0 2194 3 Methanomicrobiaceae 7 family genus 4 Methanoculleus 4 0 45989 1 153 2198 0 64 1 species Methanoculleus marisnigri 0 83986 46 1 species Methanoculleus bourgensis no rank 1 0 2619537 39 Methanoculleus sp. MAB1 1 species 39 0 86622 0 230355 1 54 genus 2 Methanolacinia 2 Methanolacinia petrolearia 1 species 52 0 54120 196137 0 80 2 family 2 genus Methanospirillum 4 0 2202 1 80 0 2203 76 species 1 Methanospirillum hungatei 4 Methanoregulaceae 6 family 1 143 1198451 0 1 55 475087 0 Methanosphaerula 1 genus 2 54 475088 0 Methanosphaerula palustris species 1 3 genus Methanoregula 2 395331 0 1 84 53 358766 0 Methanoregula boonei species 1 29 882104 0 Methanoregula formicica species 1 35 88404 0 2 family genus 2 Methanocorpusculum 3 2192 0 35 1 32 0 83984 Methanocorpusculum labreanum species 1 3087 1 0 94695 Methanosarcinales 8 27 order 0 143067 164 3 family genus 3 4 Methanothrix 0 2222 164 1 Methanosaeta harundinacea species 1 74 301375 0 1 species Methanothrix soehngenii 2223 0 86 2206 0 1 2915 23 family 3 Methanosarcinaceae Methanosarcina 6 genus 13 1 2186 0 2207 species 1 Methanosarcina barkeri 0 2208 558 2210 0 131 species 1 Methanosarcina thermophila Methanosarcina lacustris 1 species 115 0 170861 2215 0 154 species 1 Methanosarcina vacuolata 2644672 0 445 4 no rank 147 1434099 0 Methanosarcina sp. Kolksee species 1 Methanosarcina sp. WWM596 species 1 88 0 1434103 1434100 0 135 1 species Methanosarcina sp. MTP4 1434102 0 75 1 species Methanosarcina sp. WH1 1 species Methanosarcina siciliae 0 38027 314 1 species Methanosarcina acetivorans 2214 0 120 Methanosarcina horonobensis species 1 127 418008 0 216 2209 0 Methanosarcina mazei 1 species genus 2 Methanomethylovorans 3 101191 0 80 1 101192 0 77 1 species Methanomethylovorans hollandica genus 2 138 0 2175 2177 0 63 1 species Methanohalophilus halophilus 75 2176 0 Methanohalophilus mahii 1 species genus 1 196136 0 113 species 1 Methanosalsum zhilinae 0 39669 113 genus 2 0 2225 154 Methanococcoides burtonii 1 species 81 0 29291 Methanococcoides methylutens species 1 73 2226 0 genus 1 182 0 2321 Methanohalobium evestigatum 1 species 182 2322 0 1 genus 59 0 2220 1 species Methanolobus psychrophilus 0 420950 59 clade 20 1106 2283796 0 1803510 0 131 clade 3 379546 0 131 1 genus 3 2 Aciduliprofundum Aciduliprofundum boonei 1 species 89 0 379547 40 0 2633939 1 no rank 0 673860 40 1 species Aciduliprofundum sp. MAR08-339 17 class 975 183967 0 1 575 0 2301 1 Thermoplasmatales order 11 family 3 97 0 46659 0 2302 97 1 3 genus 2 Thermoplasma species 1 Thermoplasma acidophilum 2303 0 30 species 1 Thermoplasma volcanium 50339 0 65 1 no rank 48 1919231 0 48 0 1054217 Thermoplasmatales archaeon BRNA1 1 species family 1 85 46630 0 1 genus 85 0 46631 0 82076 85 species 1 Picrophilus torridus 0 1747776 141 2 family 2 Cuniculiplasma genus 2 141 1 1747777 0 139 0 1673428 Cuniculiplasma divulgatum species 1 90142 0 203 family 3 1 Ferroplasma 3 genus 203 1 74968 0 Ferroplasma acidiphilum 1 species 93 74969 0 97393 0 109 1 species Ferroplasma acidarmanus 5 order 1235850 0 331 59 0 2517203 1 family 0 1291539 59 genus 1 0 1291540 59 species 1 Candidatus Methanomethylophilus alvus 1577788 0 1 272 4 family 2 Methanomassiliicoccaceae 1 196 0 1080709 Methanomassiliicoccus 1 genus 2 Candidatus Methanomassiliicoccus intestinalis species 1 195 0 1406512 1607807 0 74 genus 1 0 1577791 74 species 1 Candidatus Methanoplasma termitum 1 no rank 69 1234666 0 methanogenic archaeon ISO4-H5 species 1 69 0 1495144 5524 0 2283794 clade 43 1 2863 0 183939 6 Methanococci class 18 17 order 2857 2182 0 family 7 Methanococcaceae 6 0 2183 1586 1 1 genus 157 155862 0 155863 0 157 species 1 Methanothermococcus okinawensis 1423 1 2184 0 Methanococcus 1 genus 5 1 species Methanococcus vannielii 0 2187 164 Methanococcus maripaludis 1 species 733 39152 0 0 42879 185 species 1 Methanococcus aeolicus Methanococcus voltae species 1 340 2188 0 1 1271 196117 0 9 Methanocaldococcaceae 10 family 196119 0 165 1 2 genus Methanotorris 1 164 0 2189 Methanotorris igneus species 1 1 1097 196118 0 14 Methanocaldococcus 7 genus 1 species Methanocaldococcus infernus 0 67760 150 186 0 2641196 no rank 1 0 644281 186 1 species Methanocaldococcus sp. FS406-22 0 2190 155 species 1 Methanocaldococcus jannaschii 227 1301915 0 Methanocaldococcus bathoardescens 1 species Methanocaldococcus fervens 1 species 169 0 83171 species 1 Methanocaldococcus vulcanius 73913 0 196 25 class 2 Methanobacteria 183925 0 1 2661 1 2659 0 2158 2 Methanobacteriales order 24 2473 1 2159 0 1 Methanobacteriaceae 22 family 1 699 0 2160 2 Methanobacterium 8 genus species 1 Methanobacterium subterraneum 0 59277 88 118062 0 112 1 species Methanobacterium congolense 868131 0 135 species 1 Methanobacterium paludis 80 2162 0 Methanobacterium formicicum 1 species no rank 2 2627676 0 136 0 1911685 80 1 species Methanobacterium sp. MZ-A1 1379702 0 56 1 species Methanobacterium sp. MB1 1 species Methanobacterium lacus 877455 0 146 2 genus 1 Methanosphaera 0 2316 273 1 1 species Methanosphaera stadtmanae 0 2317 272 genus 5 1 Methanothermobacter 0 145260 140 1 23 0 145261 Methanothermobacter wolfeii 1 species 1 no rank 43 2631116 0 0 866790 43 1 species Methanothermobacter sp. CaT2 species 1 Methanothermobacter marburgensis 145263 0 44 0 145262 29 1 species Methanothermobacter thermautotrophicus 0 2172 1360 6 genus 230361 0 239 1 species Methanobrevibacter millerae 0 2173 304 species 1 Methanobrevibacter smithii 174 83816 0 Methanobrevibacter ruminantium species 1 2 no rank 0 2638681 369 0 224719 208 species 1 Methanobrevibacter sp. AbM4 1 species Methanobrevibacter sp. YE315 1609968 0 161 Methanobrevibacter olleyae species 1 274 0 294671 1 family 184 0 2178 184 2179 0 1 genus species 1 Methanothermus fervidus 0 2180 184 Thermococci 3 class 40 1 1648 183968 0 order 39 0 2258 1645 2259 0 1645 1 family 39 1 Thermococcaceae 1 genus 83867 0 38 species 1 Palaeococcus pacificus 971279 0 38 2263 0 1326 1 29 genus Thermococcus 6 0 54077 19 1 species Thermococcus barossii 614 72803 0 Thermococcus siculi 1 species 49899 0 12 1 species Thermococcus profundus Thermococcus thioreducens species 1 12 0 277988 110164 0 15 species 1 Thermococcus guaymasensis 1 species Thermococcus peptonophilus 53952 0 21 72 582419 0 Thermococcus paralvinellae 1 species 0 2264 10 species 1 Thermococcus celer Thermococcus chitonophagus 1 species 51 0 54262 195522 0 22 species 1 Thermococcus nautili 0 187878 23 1 species Thermococcus gammatolerans 163003 0 20 1 species Thermococcus cleftensis 71998 0 16 1 species Thermococcus pacificus species 1 Thermococcus gorgonarius 0 71997 14 1 species Thermococcus barophilus 55802 0 79 0 311400 11 species 1 Thermococcus kodakarensis 1 species Thermococcus piezophilus 0 1712654 17 13 187880 0 Thermococcus radiotolerans 1 species species 1 Thermococcus onnurineus 342948 0 28 2265 0 51 species 1 Thermococcus litoralis 6 no rank 0 2627626 98 Thermococcus sp. 2319x1 1 species 36 0 1674923 122420 0 8 1 species Thermococcus sp. P6 12 0 2016361 Thermococcus sp. EXT12c 1 species 1 species Thermococcus sp. 5-4 2008440 0 21 14 246969 0 Thermococcus sp. AM4 1 species 1042877 0 7 1 species Thermococcus sp. 4557 1 species Thermococcus eurythermalis 1505907 0 15 1 species Thermococcus sibiricus 172049 0 87 2260 0 280 1 genus 8 Pyrococcus 1 Pyrococcus yayanosii species 1 17 1008460 0 2 no rank 99 2629106 0 Pyrococcus sp. NA2 1 species 53 0 342949 46 0 1183377 Pyrococcus sp. ST04 species 1 31 1609559 0 Pyrococcus kukulkanii 1 species 1 species Pyrococcus horikoshii 0 53953 37 Pyrococcus abyssi 1 species 40 0 29292 55 2261 0 Pyrococcus furiosus 1 species 11 class 1 Archaeoglobi 183980 0 298 1 order 10 2231 0 297 2232 0 297 1 family 10 1 Archaeoglobaceae 42 0 54260 1 genus Ferroglobus placidus 1 species 42 54261 0 1 64 0 190818 1 Geoglobus 3 genus 1 species Geoglobus acetivorans 565033 0 29 Geoglobus ahangari 1 species 34 0 113653 1 190 0 2233 4 Archaeoglobus genus 5 1316941 0 78 species 1 Archaeoglobus sulfaticallidus 58290 0 34 1 species Archaeoglobus veneficus 1 species Archaeoglobus profundus 84156 0 38 2234 0 36 species 1 Archaeoglobus fulgidus clade 56 0 1783275 3405 43 phylum 1643 28889 0 183924 0 1643 43 class 247 2266 0 12 order 159 0 2267 family 7 29 2270 0 genus 2 Thermoproteus uzoniensis species 1 14 184117 0 1 species Thermoproteus tenax 2271 0 15 1 genus 23 2276 0 Pyrobaculum islandicum 1 species 23 2277 0 3 genus Vulcanisaeta 1 0 164450 1 63 species 1 Vulcanisaeta moutnovskia 985052 0 38 0 164451 24 1 species Vulcanisaeta distributa 44 76886 0 1 genus 76887 0 44 1 species Caldivirga maquilingensis 88 0 114378 family 5 0 2268 1 88 5 genus Thermofilum 1 Thermofilum uzonense species 1 22 1550241 0 species 1 Thermofilum pendens 0 2269 12 species 1 Thermofilum adornatus 0 1365176 28 species 1 Thermofilum carboxyditrophus 1483572 0 25 294 114380 0 order 16 family 5 Pyrodictiaceae 1 0 2307 1 66 23 0 54251 1 genus 0 54252 23 1 species Pyrolobus fumarii 2 genus 1 Pyrodictium 0 2308 14 1 1273541 0 13 1 species Pyrodictium delaneyi 28 0 54247 1 genus 28 0 54248 Hyperthermus butylicus species 1 family 11 Desulfurococcaceae 2 0 2272 228 1 33 2273 0 genus 2 1 species Desulfurococcus mucosus 0 2275 8 94694 0 25 species 1 Desulfurococcus amylolyticus 1 genus 0 54253 22 22 0 54254 Thermosphaera aggregans 1 species 2279 0 128 1 3 genus Staphylothermus 1 2280 0 68 1 species Staphylothermus marinus 59 0 84599 Staphylothermus hellenicus species 1 2 genus 54258 0 21 1 species Ignicoccus hospitalis 0 160233 8 54259 0 13 1 species Ignicoccus islandicus 0 477695 1 22 genus 2 Thermogladius 1 Thermogladius calderae 1 species 21 1200300 0 0 2281 958 1 order 11 1 Sulfolobales Sulfolobaceae 3 family 10 1 957 118883 0 2 genus 41980 0 94 1006005 0 60 1 species Metallosphaera cuprina Metallosphaera sedula 1 species 34 43687 0 1 genus 127 0 2100760 2287 0 127 1 species Sulfolobus solfataricus 12914 0 114 genus 1 563177 0 114 species 1 Acidianus hospitalis 0 69655 188 genus 1 111955 0 188 species 1 Sulfolobus tokodaii 2284 0 1 431 genus 4 3 Sulfolobus 126 0 2641160 no rank 1 126 0 1891280 Sulfolobus sp. A20 1 species 94 0 2285 Sulfolobus acidocaldarius species 1 208 0 43080 Sulfolobus islandicus 1 species order 4 144 0 871006 1 family 871007 0 7 7 105850 0 genus 1 Acidilobus saccharovorans 1 species 7 242703 0 255472 0 1 137 3 family Caldisphaeraceae 2 1 135 0 200414 Caldisphaera 1 2 genus Caldisphaera lagunensis species 1 134 0 200415 1 1739 0 651137 1 Thaumarchaeota phylum 12 659 0 31932 order 5 659 0 338190 5 family 338191 0 1 395 genus 3 Nitrosopumilus 2 Candidatus Nitrosopumilus adriaticus species 1 198 1580092 0 Candidatus Nitrosopumilus sediminis species 1 195 1229909 0 1 264 0 1993653 Candidatus Nitrosomarinus 2 genus 2 262 1898749 0 Candidatus Nitrosomarinus catalina species 1 0 1643678 777 2 class 1 order 485 1968909 0 1 family 0 1968910 485 485 0 498374 1 genus 485 2045011 0 Candidatus Nitrosocaldus islandicus species 1 1033996 0 292 order 1 1033997 0 292 family 1 497726 0 292 1 genus Nitrososphaera viennensis species 1 292 1034015 0 4 no rank 302 651142 0 genus 2 2 Candidatus Nitrosopelagicus 1593364 0 200 1 Candidatus Nitrosopelagicus brevis species 1 198 0 1410606 genus 2 0 1825023 102 1846278 0 47 species 1 Candidatus Nitrosotenuis sp. AQ6f 0 1603555 55 species 1 Candidatus Nitrosotenuis cloacae phylum 1 23 0 51967 genus 1 23 0 498845 23 0 498846 Candidatus Korarchaeum cryptofilum 1 species 0 name 1 0 superkingdom 4246 11 Bacteria 0 2 1 4027844 0 2138240 84 2 phylum 0 2138243 84 1 class 2 Coprothermobacteria 4 2138246 0 80 1 order 80 0 2138247 1 family 80 68335 0 1 genus 80 0 35786 Coprothermobacter proteolyticus 1 species 1224 0 1 512110 2002 phylum 103 Proteobacteria class 11 Oligoflexia 6 0 1553900 1 1549 1 869 2024979 0 Bacteriovoracales 2 5 order 2 family 597 1652132 0 1 597 0 1652133 10 Halobacteriovorax 2 genus species 1 Halobacteriovorax marinus 0 97084 587 0 263369 270 family 2 3 Bacteriovorax genus 2 270 1 0 146784 Bacteriovorax stolpii species 1 267 960 0 0 213481 1 674 5 order Bdellovibrionales 4 0 213483 1 670 4 family Bdellovibrionaceae 5 0 958 1 665 3 genus 3 Bdellovibrio Bdellovibrio bacteriovorus 1 species 434 959 0 228 453816 0 Bdellovibrio exovorus 1 species 1 194745 28211 0 Alphaproteobacteria 156 class 558 21 Pelagibacterales order 9 97644 1 0 54526 1 6230 2045213 0 7 Candidatus Fonsibacter 2 genus 1 species Candidatus Fonsibacter ubiquis 1925548 0 6223 31 Pelagibacteraceae 6 family 91393 1 0 1655514 no rank 2 50901 1655516 0 1 species alpha proteobacterium HIMB59 744985 0 6534 44367 859653 0 alpha proteobacterium HIMB5 species 1 3 genus 18 Candidatus Pelagibacter 198251 0 40461 1 1 no rank 2647897 0 5780 species 1 Candidatus Pelagibacter sp. IMCC9063 1002672 0 5780 34663 198252 0 Candidatus Pelagibacter ubique 1 species 8 no rank 0 82117 2258 235 1 0 1632780 8 Phreatobacter 2 genus 1 species Phreatobacter sp. S-12 0 1868589 227 clade 2 0 62654 1534 genus 2 12 Candidatus Puniceispirillum 767891 0 1534 1 Candidatus Puniceispirillum marinum species 1 1522 0 767892 278 1 991903 0 Polymorphum 18 genus 2 260 991904 0 Polymorphum gilvum 1 species 2 genus Micavibrio 2 0 213485 211 1 349221 0 209 1 species Micavibrio aeruginosavorus 0 356 1 37251 order 209 225 Rhizobiales 1 9966 82115 0 Rhizobiaceae 73 52 family no rank 33 0 227290 5257 24 genus Rhizobium 210 0 379 1 3590 0 56730 187 species 1 Rhizobium gallicum 0 398 127 species 1 Rhizobium tropici no rank 18 2613769 0 1494 Rhizobium sp. N324 1 species 128 0 1703969 0 2020313 23 1 species Rhizobium sp. TAL182 0 1981173 85 1 species Rhizobium sp. NXC14 1 species Rhizobium sp. N1341 0 1703962 3 1 species Rhizobium sp. IE4771 0 1301032 93 133 1125847 0 Rhizobium sp. NT-26 1 species 114 1914541 0 Rhizobium sp. Y9 species 1 112 0 424182 Rhizobium sp. IRBG74 species 1 0 2020312 108 1 species Rhizobium sp. CIAT894 90 0 2020311 Rhizobium sp. Kim5 species 1 species 1 Rhizobium sp. N113 1703960 0 3 Rhizobium sp. NXC24 species 1 160 2048897 0 Rhizobium sp. N741 1 species 3 1703967 0 Rhizobium sp. N731 1 species 14 0 1703966 117 1869170 0 Rhizobium sp. S41 species 1 14 1703961 0 Rhizobium sp. N1314 species 1 species 1 Rhizobium sp. ACO-34A 0 1571470 161 1 species Rhizobium sp. 10195 0 2028343 133 0 384 848 1 species Rhizobium leguminosarum 1 species Rhizobium etli 0 29449 414 396 0 310 1 species Rhizobium phaseoli 19 Agrobacterium genus 7 1 1439 357 0 0 359 111 1 species Agrobacterium rhizogenes 1 species Agrobacterium vitis 0 373 157 863 1183400 0 2 species group 1 species Agrobacterium fabrum 0 1176649 140 Agrobacterium tumefaciens species 1 723 358 0 289 2632611 0 no rank 2 Agrobacterium sp. H13-3 1 species 103 861208 0 Agrobacterium sp. RAC06 species 1 186 1842536 0 0 1525371 1 228 2 genus 3 Neorhizobium species 1 Neorhizobium galegae 399 0 225 2 Shinella genus 2 1 246 0 323620 1 no rank 244 2643062 0 244 0 879274 Shinella sp. HZN7 species 1 1983 0 227292 no rank 10 genus 3 9 Ensifer 106591 0 1 340 165 716925 0 Ensifer sojae 1 species 1 species Ensifer adhaerens 106592 0 166 genus 7 40 Sinorhizobium 28105 0 1 1643 403 382 0 Sinorhizobium meliloti species 1 0 194963 152 1 species Sinorhizobium americanum 663276 0 468 1 species group Sinorhizobium fredii species 1 468 0 380 110321 0 182 1 species Sinorhizobium medicae 398 0 2613772 no rank 2 212 1842534 0 Sinorhizobium sp. RAC02 1 species Sinorhizobium sp. CCBAU 05631 1 species 186 794846 0 6 genus 39 Liberibacter 34019 0 1 2407 Candidatus Liberibacter americanus species 1 562 309868 0 1273132 0 592 species 1 Liberibacter crescens 0 34021 359 1 species Candidatus Liberibacter asiaticus Candidatus Liberibacter africanus 1 species 379 34020 0 556287 0 476 1 species Candidatus Liberibacter solanacearum 0 41294 1 5083 family 26 47 Bradyrhizobiaceae 24 Rhodopseudomonas genus 2 1 1242 1073 0 1218 0 1076 Rhodopseudomonas palustris species 1 genus 11 Bradyrhizobium 84 0 374 2475 1 1 species Bradyrhizobium diazoefficiens 0 1355477 380 0 44255 216 species 1 Bradyrhizobium oligotrophicum 1239 0 2631580 no rank 6 species 1 Bradyrhizobium sp. CCGE-LA001 1223566 0 180 1 species Bradyrhizobium sp. BTAi1 0 288000 190 species 1 Bradyrhizobium sp. ORS 285 0 115808 194 species 1 Bradyrhizobium sp. SK17 2057741 0 237 species 1 Bradyrhizobium sp. ORS 278 114615 0 223 Bradyrhizobium sp. species 1 215 0 376 348 375 0 Bradyrhizobium japonicum 1 species 208 0 1274631 Bradyrhizobium icense 1 species 3 Nitrobacter 3 genus 240 1 0 911 130 912 0 Nitrobacter hamburgensis species 1 species 1 Nitrobacter winogradskyi 0 913 107 2 genus Oligotropha 3 0 40136 138 1 0 40137 135 species 1 Oligotropha carboxidovorans genus 2 2 Variibacter 1649510 0 171 1 Variibacter gotjawalensis species 1 169 0 1333996 5 genus Bosea 36 85413 0 770 1 1526658 0 202 species 1 Bosea vaviloviae 2653178 0 532 no rank 3 1 species Bosea sp. RAC05 1842539 0 209 2015316 0 190 species 1 Bosea sp. AS-1 Bosea sp. PAMC 26642 1 species 133 1792307 0 2 Brucellaceae family 20 1 1274 118882 0 0 234 513 1 14 genus 165 Brucella 1 species Brucella abortus 235 0 23 Brucella vulpis 1 species 34 981386 0 29461 0 60 species 1 Brucella suis Brucella melitensis species 1 9 29459 0 species 1 Brucella ovis 236 0 7 1 species Brucella ceti 120577 0 19 21 0 36855 Brucella canis 1 species no rank 4 0 2632610 135 Brucella sp. 09RB8910 species 1 38 0 1844051 43 0 1149952 Brucella sp. 09RB8471 1 species 1 species Brucella sp. 2002734562 0 1891098 10 Brucella sp. 141012304 1 species 44 1885919 0 species 1 Brucella pinnipedialis 0 120576 25 15 0 444163 Brucella microti 1 species Ochrobactrum 8 genus 5 1 759 0 528 0 271865 145 1 species Ochrobactrum sp. A44 1 species Ochrobactrum anthropi 529 0 111 0 571256 280 1 species Ochrobactrum pituitosum 0 419475 215 species 1 Ochrobactrum pseudogrignonense Methylocystaceae 5 6 family 1 498 0 31993 3 genus Methylocystis 19 0 133 315 1 1 species Methylocystis bryophila 0 655015 141 1 no rank 2625913 0 155 0 187303 155 species 1 Methylocystis sp. SC2 1 178 425 0 Methylosinus 1 genus 2 0 426 177 species 1 Methylosinus trichosporium Xanthobacteraceae 7 7 family 1 608 335928 0 152053 0 1 196 genus 2 5 Starkeya 191 921 0 Starkeya novella species 1 0 6 1 159 genus 2 Azorhizobium 3 species 1 Azorhizobium caulinodans 0 7 156 12 Xanthobacter genus 2 246 1 0 279 species 1 Xanthobacter autotrophicus 280 0 234 0 119043 277 1 3 family Rhodobiaceae 2 275 1 0 256616 7 Parvibaculum genus 2 268 0 256618 Parvibaculum lavamentivorans 1 species family 19 Hyphomicrobiaceae 22 45401 0 2159 1 1082930 0 1 194 2 genus 7 Pelagibacterium 187 0 531813 Pelagibacterium halotolerans species 1 6 Blastochloris genus 2 1 183 59282 0 Blastochloris viridis 1 species 177 0 1079 233 1 29407 0 9 Rhodoplanes 2 genus no rank 1 224 0 2619116 224 674703 0 Rhodoplanes sp. Z2-YC6860 species 1 1 634 81 0 36 Hyphomicrobium 4 genus Hyphomicrobium nitrativorans species 1 120 1427356 0 Hyphomicrobium denitrificans 1 species 214 0 53399 264 2619925 0 no rank 1 717785 0 264 1 species Hyphomicrobium sp. MC1 Rhodomicrobium 5 2 genus 143 1 0 1068 0 1069 138 1 species Rhodomicrobium vannielii 0 46913 567 1 4 genus Devosia 39 3 no rank 0 196773 528 0 1643450 177 species 1 Devosia sp. H5989 201 0 1736675 Devosia sp. A16 1 species Devosia sp. I507 1 species 150 2083786 0 0 119044 1 183 2 genus 4 Filomicrobium species 1 Candidatus Filomicrobium marinum 1608628 0 179 1 9191 772 0 13 Bartonellaceae 18 family 180 Bartonella 17 genus 9178 1 0 773 512 0 33047 Bartonella vinsonii species 1 803 0 411 species 1 Bartonella quintana Bartonella tribocorum species 1 495 0 85701 1 species Bartonella henselae 0 38323 466 0 388640 352 1 species Bartonella australis Bartonella clarridgeiae 1 species 629 0 56426 1 species Bartonella ancashensis 0 1318743 510 0 33045 550 species 1 Bartonella grahamii 1 species Bartonella bacilliformis 0 774 609 no rank 6 2645622 0 3985 638 515256 0 Bartonella sp. 1-1C species 1 Bartonella sp. WD16.2 species 1 661 0 1933904 Bartonella sp. Raccoon60 species 1 638 0 1933912 699 0 1933907 Bartonella sp. JB63 species 1 Bartonella sp. JB15 1 species 699 0 1933906 species 1 Bartonella sp. A1379B 1933910 0 650 0 1686310 479 species 1 Bartonella apis 6 no rank 0 119042 627 8 Hartmannibacter 2 genus 1 251 1572860 0 243 1482074 0 Hartmannibacter diazotrophicus 1 species Pseudorhodoplanes 4 2 genus 1 184 0 1734920 Pseudorhodoplanes sinuspersici species 1 180 0 1235591 Methyloceanibacter 4 genus 2 192 1 1484898 0 species 1 Methyloceanibacter caenitepidi 0 1384459 188 Methylobacteriaceae 16 15 family 2744 1 119045 0 genus 9 70 Methylobacterium 0 407 1 1475 Methylobacterium aquaticum species 1 230 270351 0 no rank 3 481 0 2615210 1 species Methylobacterium sp. 4-46 426117 0 198 1 species Methylobacterium sp. C1 0 1479019 172 0 925818 111 1 species Methylobacterium sp. AMS5 Methylobacterium phyllosphaerae 1 species 143 0 418223 1 species Methylobacterium radiotolerans 31998 0 164 114616 0 252 1 species Methylobacterium nodulans 135 334852 0 Methylobacterium oryzae species 1 genus 3 1079 0 2282523 1 species Methylobacterium extorquens 408 0 660 Methylobacterium populi species 1 277 0 223967 Methylobacterium zatmanii species 1 142 29429 0 186650 0 1 174 2 genus Microvirga 6 Microvirga ossetica species 1 168 0 1882682 0 69277 3019 1 family 20 31 Phyllobacteriaceae 1 188 31988 0 Aminobacter 4 genus 2 0 83263 184 species 1 Aminobacter aminovorans 211 1 274591 0 1 Hoeflea genus 2 no rank 1 210 0 2614931 0 1620421 210 1 species Hoeflea sp. IMCC20628 2 genus Phyllobacterium 2 28100 0 1 206 species 1 Phyllobacterium zundukense 1867719 0 204 0 449972 1 128 2 genus 2 Chelativorans 2643807 0 126 1 no rank 126 266779 0 Chelativorans sp. BNC1 species 1 genus 2 3 Nitratireductor 0 245876 1 238 Nitratireductor basaltis species 1 235 472175 0 68287 0 1 2017 genus 9 Mesorhizobium 104 species 1 Mesorhizobium loti 0 381 205 species 1 Mesorhizobium amorphae 0 71433 181 species 1 Mesorhizobium australicum 0 536018 207 325217 0 290 no rank 1 290 278153 0 Mesorhizobium sp. WSM1497 species 1 0 1670800 211 1 species Mesorhizobium sp. B7 species 1 Mesorhizobium opportunistum 0 593909 225 1 species Mesorhizobium ciceri 0 39645 381 213 0 2066070 Mesorhizobium japonicum 1 species Chelatococcaceae 4 4 family 427 1 2036754 0 25 Chelatococcus genus 3 423 1 28209 0 1 no rank 204 2638111 0 1702325 0 204 species 1 Chelatococcus sp. CO-6 Chelatococcus daeguensis 1 species 194 0 444444 family 7 1 Aurantimonadaceae 0 255475 776 1 615 1 293088 0 29 Martelella genus 4 no rank 1 193 0 2629616 193 0 686597 Martelella sp. AD-3 species 1 0 293089 223 species 1 Martelella mediterranea species 1 Martelella endophytica 1486262 0 170 160 1 414371 0 3 Aureimonas genus 2 1 no rank 2615206 0 157 0 1349819 157 1 species Aureimonas sp. AU20 1 377 0 45404 Beijerinckiaceae 2 5 family Beijerinckia 3 2 genus 1 246 532 0 0 533 243 1 species Beijerinckia indica 2 Methylocella 2 genus 129 1 120652 0 Methylocella silvestris 1 species 127 0 199596 20 order 9 Caulobacterales 0 204458 1 2213 family 19 53 Caulobacteraceae 76892 0 1 2204 20 0 170 1 genus 2 Phenylobacterium 1 1 species Phenylobacterium zucineum 284016 0 169 no rank 1 142 81440 0 0 1759059 142 1 species Caulobacteraceae bacterium OTSz_A_272 7 genus 39 Brevundimonas 41275 0 1 726 0 41276 116 1 species Brevundimonas vesicularis no rank 3 339 2622653 0 Brevundimonas sp. LM2 1 species 159 0 1938605 1 species Brevundimonas sp. DS20 1532555 0 88 1 species Brevundimonas sp. GW460-12-10-14-LB2 1827469 0 92 Brevundimonas subvibrioides 1 species 132 0 74313 Brevundimonas naejangsanensis 1 species 100 588932 0 5 Asticcacaulis genus 2 166 1 76890 0 161 0 78587 Asticcacaulis excentricus species 1 75 0 1 947 6 genus Caulobacter 20 186 69666 0 Caulobacter mirabilis 1 species 151 69395 0 Caulobacter henricii 1 species 0 155892 267 1 species Caulobacter vibrioides 176 2648921 0 1 no rank 1 species Caulobacter sp. K31 366602 0 176 88688 0 147 species 1 Caulobacter segnis 1 15148 0 766 Rickettsiales 17 55 order 1016 1699067 0 1 no rank Rickettsiales bacterium Ac37b 1 species 1016 1528098 0 1 7240 942 0 Anaplasmataceae 12 23 family 1 3280 0 943 Ehrlichia 18 genus 6 0 106181 596 no rank 1 Ehrlichia sp. HF 1 species 596 391036 0 4 species group 106178 0 2666 35795 0 531 1 species Ehrlichia muris 601 945 0 Ehrlichia chaffeensis 1 species Ehrlichia ruminantium 1 species 781 779 0 species 1 Ehrlichia canis 944 0 753 283 1 768 0 3 Anaplasma genus 4 1 species Anaplasma marginale 770 0 70 76 0 769 Anaplasma centrale 1 species 1 species group 0 106179 134 1 species Anaplasma phagocytophilum 0 948 134 0 952 3129 tribe 8 genus 8 Wolbachia 74 953 0 3129 1 3055 0 2640676 no rank 7 80849 0 394 1 species Wolbachia endosymbiont of Brugia malayi Wolbachia endosymbiont of Cimex lectularius 1 species 359 246273 0 1 species Wolbachia endosymbiont of Onchocerca ochengi 0 100901 365 864 77038 0 Wolbachia endosymbiont of Drosophila simulans 1 species 359 77551 0 Wolbachia endosymbiont of Onchocerca volvulus species 1 354 0 66084 Wolbachia sp. wRi 1 species 360 163164 0 Wolbachia endosymbiont of Drosophila melanogaster 1 species 4 genus Neorickettsia 5 0 33993 1 536 1 species Neorickettsia sennetsu 951 0 193 Neorickettsia helminthoeca species 1 167 0 33994 1 species Neorickettsia risticii 0 950 171 27 family Rickettsiaceae 6 775 0 1 6455 0 33988 6010 24 tribe 1 genus 69474 0 896 784 0 896 1 species Orientia tsutsugamushi 5114 1 0 780 470 Rickettsia 23 genus 548 0 114295 1 no rank 0 337479 548 species 1 Rickettsia endosymbiont of Bemisia tabaci 2 species group 114292 0 1144 785 0 559 1 species Rickettsia typhi Rickettsia prowazekii 1 species 585 0 782 1051 1129742 0 species group 2 788 0 406 1 species Rickettsia canadensis 33990 0 645 species 1 Rickettsia bellii 0 114277 1901 species group 17 Rickettsia montanensis species 1 57 0 33991 44 0 35790 Rickettsia japonica 1 species 92 33989 0 Rickettsia amblyommatis species 1 35 226665 0 Rickettsia heilongjiangensis 1 species Rickettsia felis species 1 265 42862 0 Rickettsia rhipicephali species 1 75 0 33992 786 0 222 species 1 Rickettsia akari Rickettsia conorii species 1 45 0 781 787 0 396 species 1 Rickettsia australis 783 0 72 species 1 Rickettsia rickettsii 1 species Rickettsia monacensis 109232 0 202 1 species Rickettsia africae 0 35788 29 1 species Rickettsia massiliae 35791 0 64 27 0 35794 Rickettsia slovaca species 1 0 47589 199 1 species Rickettsia peacockii species 1 Rickettsia philipii 0 1105106 39 1 species Rickettsia parkeri 35792 0 38 2 Candidatus Phycorickettsia genus 2 1 439 0 2115980 Candidatus Phycorickettsia trachydisci 1 species 437 0 2115978 1 420 0 1328881 1 Candidatus Midichloriaceae 3 family 1 419 0 411566 5 Candidatus Midichloria genus 2 species 1 Candidatus Midichloria mitochondrii 0 234827 414 59 Sphingomonadales order 82 1 10872 0 204457 41297 0 1 8415 59 family 122 Sphingomonadaceae 3 genus Sphingorhabdus 2 1434046 0 328 1 no rank 2 2614947 0 326 156 0 2077182 Sphingorhabdus sp. YGSMI21 1 species 170 0 1806885 Sphingorhabdus sp. M41 1 species 2 Rhizorhabdus genus 2 1 177 1649486 0 175 1850238 0 Rhizorhabdus dicambivorans 1 species 448 1 541 0 1 Zymomonas genus 2 Zymomonas mobilis 1 species 447 0 542 Blastomonas 4 2 genus 183 1 150203 0 2626550 0 179 no rank 1 species 1 Blastomonas sp. RAC04 1842535 0 179 2 genus 5 Citromicrobium 72173 0 100 1 95 0 2630544 1 no rank Citromicrobium sp. JL477 species 1 95 0 1634516 genus 1 146 2685927 0 146 1921510 0 Sphingomonas sp. JJ-A5 1 species Sphingomonas 76 15 genus 1 3003 0 13687 Sphingomonas panacis 1 species 140 0 1560345 1 species Sphingomonas hengshuiensis 0 1609977 109 0 1549858 116 species 1 Sphingomonas taxi species 1 Sphingomonas sanxanigenens 0 397260 228 6 no rank 0 196159 1631 Sphingomonas sp. NIC1 species 1 94 0 1961362 1 species Sphingomonas sp. KC8 1030157 0 123 745310 0 141 1 species Sphingomonas sp. MM-1 Sphingomonas sp. Cra20 1 species 109 0 1327635 1 species Sphingomonas sp. LK11 0 1390395 1043 121 1938607 0 Sphingomonas sp. LM7 species 1 119 0 152682 Sphingomonas melonis species 1 144 93064 0 Sphingomonas koreensis species 1 160791 0 1 440 2 species Sphingomonas wittichii 219 1 strain Sphingomonas sp. DC-6 1283312 0 221 1 1465 165697 0 Sphingopyxis 36 genus 10 Sphingopyxis granuli species 1 139 0 267128 0 117207 118 1 species Sphingopyxis alaskensis Sphingopyxis fribergensis species 1 125 0 1515612 Sphingopyxis terrae species 1 111 33052 0 no rank 4 2614943 0 749 species 1 Sphingopyxis sp. MG 1866325 0 157 1 species Sphingopyxis sp. LPB0140 0 1913578 327 1 species Sphingopyxis sp. QXT-31 1357916 0 156 109 0 292913 Sphingopyxis sp. 113P3 1 species 187 0 33050 Sphingopyxis macrogoltabida species 1 genus 5 Novosphingobium 17 0 165696 1 568 205844 0 137 1 species Novosphingobium pentaromativorans 1 species Novosphingobium aromaticivorans 0 48935 90 167 0 158500 Novosphingobium resinovorum species 1 2644732 0 157 no rank 1 Novosphingobium sp. PP1Y 1 species 157 0 702113 genus 1 2709685 0 172 species 1 Sphingorhabdus flavimaris 0 266812 172 genus 15 76 Sphingobium 165695 0 1 1703 Sphingobium japonicum 1 species 115 0 332056 no rank 6 702 2611147 0 112 407020 0 Sphingobium sp. MI1205 species 1 Sphingobium sp. EP60837 1 species 91 0 1855519 125 1843368 0 Sphingobium sp. RAC03 species 1 1 species Sphingobium sp. SYK-6 0 627192 119 Sphingobium sp. TKS 1 species 124 0 1315974 131 484429 0 Sphingobium sp. YBL2 species 1 Sphingobium cloacae 1 species 100 120107 0 Sphingobium chlorophenolicum species 1 113 46429 0 species 1 Sphingobium baderi 1332080 0 90 Sphingobium indicum 1 species 105 0 332055 210 13690 0 Sphingobium yanoikuyae species 1 species 1 Sphingobium herbicidovorans 76947 0 98 Sphingobium hydrophobicum 1 species 94 1673076 0 1 2398 0 335929 Erythrobacteraceae 40 family 22 0 2800788 720 no rank 6 1 310 1111 0 Porphyrobacter 31 genus 3 279 0 2683265 2 no rank 127 0 2023229 Porphyrobacter HT-58-2 species 1 1896196 0 152 1 species Porphyrobacter sp. LM 6 genus 3 Erythrobacter 52 0 1041 410 1 1 species Porphyrobacter neustonensis 0 1112 125 Erythrobacter litoralis 1 species 233 0 39960 1 233 0 1295327 Croceicoccus 30 genus 3 Croceicoccus marinus 1 species 130 450378 0 species 1 Croceicoccus naphthovorans 1348774 0 73 Altererythrobacter 66 genus 4 1 367 0 361177 83 1267766 0 Altererythrobacter atlanticus species 1 species 1 Altererythrobacter epoxidivorans 361183 0 106 Altererythrobacter ishigakiensis 1 species 112 0 476157 2 genus 441 2800681 0 species 1 Erythrobacter atlanticus 0 1648404 242 Erythrobacter gangjinensis species 1 199 502682 0 genus 2 1855416 0 165 70 266951 0 Erythrobacter seohaensis 1 species 0 192812 95 species 1 Erythrobacter flavus 2800686 0 183 2 genus 93 0 1982042 Altererythrobacter mangrovi species 1 90 0 692370 Altererythrobacter dongtanensis 1 species 158 2800682 0 genus 1 0 645517 158 1 species Altererythrobacter namhicola genus 1 2800685 0 91 0 543877 91 1 species Altererythrobacter marensis 2 order 0 2800059 237 237 0 2800061 family 2 2 genus Maricaulis 8 0 74317 1 237 species 1 Maricaulis maris 0 74318 229 0 1191478 186 1 3 order 1 Magnetococcales 185 1 0 1191479 Magnetococcaceae 2 2 family 1 genus 183 0 162171 183 1124597 0 Magnetococcus marinus 1 species 6 order 1230 0 2800060 Hyphomonadaceae 11 6 family 1 1230 0 69657 genus 3 Hyphomonas 11 85 0 1 703 species 1 Hyphomonas neptunium 81032 0 190 1 no rank 502 2630699 0 502 0 1906738 Hyphomonas sp. Mor2 1 species 516 1 2723 0 Hirschia 6 2 genus 2724 0 510 species 1 Hirschia baltica 7 order Holosporales 3 0 1921002 1 1350 0 2100208 495 1 family 1509243 0 495 genus 1 species 1 Candidatus Nucleicultrix amoebiphila 1509244 0 495 0 1777752 1 376 3 family 2 Candidatus Paracaedibacteraceae 1 374 0 1521255 Candidatus Paracaedibacter 4 2 genus Candidatus Paracaedibacter acanthamoebae species 1 370 91604 0 Holosporaceae 1 family 2 1 476 44746 0 no rank 1 0 204454 475 86106 0 475 1 species endosymbiont of Acanthamoeba sp. UWC8 Rhodospirillales 54 order 63 1 10601 204441 0 Acetobacteraceae 33 family 31 3856 1 433 0 genus 5 Komagataeibacter 17 1434011 0 1 542 species 1 Komagataeibacter xylinus 28448 0 193 83 0 33995 Komagataeibacter europaeus species 1 species 1 Komagataeibacter nataicola 0 265960 141 Komagataeibacter medellinensis 1 species 108 0 1177712 genus 1 100 320496 0 100 0 320497 Neoasaia chiangmaiensis species 1 1602345 0 1 83 2 genus 2 Parasaccharibacter Parasaccharibacter apium 1 species 81 0 1510841 genus 3 17 Acidiphilium 0 522 1 423 1 species Acidiphilium multivorum 62140 0 215 191 0 524 Acidiphilium cryptum species 1 1344 1 434 0 11 Acetobacter genus 8 Acetobacter tropicalis species 1 198 0 104102 65959 0 127 species 1 Acetobacter pomorum 446692 0 126 1 species Acetobacter senegalensis subgenus 1 68 0 151157 68 0 435 Acetobacter aceti species 1 1 species Acetobacter oryzifermentans 0 1633874 116 136 1076596 0 Acetobacter persici 1 species 1 species Acetobacter pasteurianus 438 0 562 441 0 228 genus 2 Gluconobacter oxydans species 1 155 0 442 73 0 318683 Gluconobacter albidus species 1 364409 0 1 266 2 genus 1 Granulibacter 265 0 364410 Granulibacter bethesdensis species 1 genus 2 1 Gluconacetobacter 89583 0 174 1 173 33996 0 Gluconacetobacter diazotrophicus 1 species 1 genus 153497 0 137 153496 0 137 1 species Kozakia baliensis 438 1 125216 0 18 Roseomonas genus 3 0 2617492 219 1 no rank Roseomonas sp. FDAARGOS_362 1 species 219 2018065 0 201 0 257708 Roseomonas gilardii 1 species 88 91914 0 genus 1 88 0 91915 Asaia bogorensis 1 species 6691 1 41295 0 105 Rhodospirillaceae family 31 Niveispirillum 5 genus 2 254 1 0 1543704 Niveispirillum cyanobacteriorum species 1 249 1612173 0 1263978 0 1 1175 2 genus Candidatus Endolissoclinum 1 Candidatus Endolissoclinum faulkneri 1 species 1174 1263979 0 1499 1 0 191 Azospirillum 32 genus 5 0 528244 347 species 1 Azospirillum thiophilum 502 0 193 Azospirillum lipoferum species 1 1 species Azospirillum humicireducens 0 1226968 164 0 192 454 1 species Azospirillum brasilense genus 3 6 Thalassospira 168934 0 1 666 Thalassospira sp. CSC3H3 1 species 334 0 2048283 0 220697 326 1 species Thalassospira xiamenensis 0 1182780 1 259 genus 2 Magnetospira 9 250 0 2685734 no rank 1 0 1288970 250 species 1 Magnetospira sp. QH-2 genus 2 13 Tistrella 0 171436 1 355 342 0 171437 Tistrella mobilis 1 species 13134 0 1182 1 5 genus Magnetospirillum 43 2 no rank 2617991 0 534 272 0 1639348 Magnetospirillum sp. ME-1 1 species 0 1663591 262 1 species Magnetospirillum sp. XM-1 Magnetospirillum magneticum 1 species 262 84159 0 343 0 55518 Magnetospirillum gryphiswaldense species 1 1081 0 524 1 genus 3 Rhodospirillum 12 Rhodospirillum centenum species 1 291 34018 0 0 1085 221 species 1 Rhodospirillum rubrum 1612157 0 1 181 genus 2 3 Pararhodospirillum 0 1084 178 species 1 Pararhodospirillum photometricum 2 genus 5 Nitrospirillum 0 1543705 1 293 Nitrospirillum amazonense 1 species 288 28077 0 2 genus Haematospirillum 2 1804663 0 198 1 Haematospirillum jordaniae 1 species 196 0 1549855 89 order 43 Rhodobacterales 0 204455 1 15280 88 family 258 Rhodobacteraceae 31989 0 1 15237 1 774 0 34008 Rhodovulum 16 4 genus 409 0 2631432 2 no rank Rhodovulum sp. P5 1 species 192 0 1564506 Rhodovulum sp. MB263 1 species 217 308754 0 Rhodovulum sulfidophilum species 1 349 35806 0 1 436357 0 Thalassococcus genus 1 2 genus 4 Marinovum 0 367771 1 282 278 0 42444 Marinovum algicola 1 species 0 299261 1 233 2 genus Tateyamaria 2 231 0 299262 Tateyamaria omphalii species 1 734 1 0 53945 12 Octadecabacter 4 genus 0 1458307 186 species 1 Octadecabacter temperatus 278 1217908 0 Octadecabacter antarcticus species 1 species 1 Octadecabacter arcticus 53946 0 258 Sulfitobacter 3 genus 3 1 529 60136 0 no rank 1 265 0 196795 0 1917485 265 1 species Sulfitobacter sp. AM1-D1 1 species Sulfitobacter pseudonitzschiae 0 1402135 261 genus 3 5 Ruegeria 97050 0 1 527 2625375 0 191 no rank 1 1 species Ruegeria sp. TM1040 0 292414 191 89184 0 331 1 species Ruegeria pomeroyi 1284657 0 391 1 genus Planktomarina temperata 1 species 391 1284658 0 220 0 119541 1 genus 441209 0 220 1 species Rhodobaca barguzinensis genus 9 36 Paracoccus 0 265 1517 1 2065379 0 166 species 1 Paracoccus sp. CBA4604 0 1077935 206 1 species Paracoccus zhejiangensis species 1 Paracoccus denitrificans 266 0 183 165 0 34003 Paracoccus aminophilus 1 species 34004 0 173 species 1 Paracoccus aminovorans 0 246570 213 1 no rank 213 1529068 0 Paracoccus sp. BM15 species 1 1 species Paracoccus yeei 147645 0 229 Paracoccus contaminans species 1 146 1945662 0 Jannaschia 3 genus 2 202 1 188905 0 no rank 1 2645469 0 199 1 species Jannaschia sp. CCS1 0 290400 199 360528 0 291 1 2 genus Pelagibaca 2 0 1250539 289 1 species Pelagibaca abyssi 1 Confluentimicrobium genus 2 1 243 1609958 0 0 2643318 242 1 no rank Confluentimicrobium sp. EMB200-NS6 1 species 242 1609966 0 Dinoroseobacter 2 genus 2 1 224 0 309512 species 1 Dinoroseobacter shibae 215813 0 222 340 0 58840 2 no rank 165 0 2033435 Rhodobacteraceae bacterium QY30 1 species 1 species Rhodobacteraceae bacterium 1904441 0 175 968 1 1060 0 22 Rhodobacter genus 5 196779 0 346 2 no rank 174 0 1850250 Rhodobacter sp. LPB0142 species 1 Rhodobacter sp. CZR27 species 1 172 0 2033869 1 species Rhodobacter sphaeroides 1063 0 431 1 species Rhodobacter capsulatus 0 1061 169 1 genus 173 0 1759396 173 2622455 0 1 no rank 1920883 0 173 species 1 Marivivens sp. JLT3646 2 Antarctobacter genus 2 230 1 74032 0 1 species Antarctobacter heliothermus 74033 0 228 genus 2 0 263377 443 Thiobacimonas profunda 1 species 212 0 1229727 1 no rank 231 0 2640570 species 1 Yangia sp. CCB-MM3 0 1792508 231 1 256 0 191028 Leisingera 1 genus 2 133924 0 255 1 species Leisingera methylohalidivorans genus 5 32 Phaeobacter 0 302485 1 1793 1580596 0 384 species 1 Phaeobacter piscinae Phaeobacter inhibens species 1 732 221822 0 0 60890 447 species 1 Phaeobacter gallaeciensis Phaeobacter porticola species 1 198 1844006 0 1 230 0 58842 3 Sagittula genus 2 227 2624628 0 no rank 1 227 0 2009329 Sagittula sp. P11 species 1 Labrenzia 34 4 genus 711 1 0 478070 Labrenzia aggregata species 1 223 187304 0 no rank 2 454 0 2648686 1674922 0 208 species 1 Labrenzia sp. CP4 Labrenzia sp. VG12 species 1 246 2021862 0 1 genus 0 1649279 197 Ruegeria mobilis 1 species 197 0 379347 1 genus 0 285107 164 species 1 Thioclava nitratireducens 1915078 0 164 1 genus 260 159345 0 Roseibacterium elongatum species 1 260 159346 0 329 1 92944 0 Ketogulonicigenium 3 3 genus Ketogulonicigenium robustum 1 species 145 92947 0 1 species Ketogulonicigenium vulgare 92945 0 181 genus 2 6 Halocynthiibacter 1579315 0 1 246 240 0 1579316 Halocynthiibacter arcticus species 1 2 Defluviimonas genus 2 1 241 0 1097466 species 1 Defluviimonas alba 1335048 0 239 genus 5 Celeribacter 5 0 875170 1 995 species 1 Celeribacter ethanolicus 0 1758178 182 0 1397108 207 species 1 Celeribacter marinus 1208324 0 286 species 1 Celeribacter indicus species 1 Celeribacter manganoxidans 0 1411902 315 245186 0 1 genus 1 Loktanella 1 258 0 74030 3 Roseovarius genus 2 Roseovarius mucosus species 1 255 215743 0 261 0 2211641 1 genus Loktanella vestfoldensis species 1 261 0 245188 Roseobacter 6 3 genus 502 1 2433 0 Roseobacter denitrificans 1 species 244 2434 0 0 42443 252 1 species Roseobacter litoralis Pannonibacter 1 genus 2 1 213 227873 0 212 0 121719 Pannonibacter phragmitetus species 1 0 255473 1 319 order 4 Parvularculales 2 family 3 1 Parvularculaceae 0 255474 1 317 Parvularcula 13 genus 2 316 1 208215 0 species 1 Parvularcula bermudensis 208216 0 303 68525 0 39465 subphylum 190 14378 1 0 28221 26 Deltaproteobacteria class 118 4 order Desulfarculales 3 0 453227 1 122 119 1 453228 0 4 Desulfarculaceae family 3 453229 0 115 1 2 genus Desulfarculus 4 111 0 453230 Desulfarculus baarsii 1 species 29 0 6428 1 order 34 Myxococcales 82 8 suborder 80812 0 2066 1729 1 0 49 7 Polyangiaceae family 5 Sorangium 3 genus 2 1 1351 0 39643 1 species Sorangium cellulosum 0 56 1348 0 50 371 1 2 genus 5 Chondromyces 0 52 366 species 1 Chondromyces crocatus 3 family 1 Sandaracinaceae 1055686 0 1 337 2 genus 1 Sandaracinus 1055688 0 1 336 Sandaracinus amylolyticus species 1 335 927083 0 3729 0 80811 suborder 22 Archangiaceae 21 family 6 1 1260 0 39 0 40 168 genus 1 1 species Stigmatella aurantiaca 41 0 168 241 1 42 0 3 Cystobacter 2 genus Cystobacter fuscus 1 species 238 43 0 194 44 0 genus 1 194 0 83453 Melittangium boletus 1 species 636 47 0 1 genus Archangium gephyra 1 species 636 48 0 148 1 0 1524213 Vulgatibacteraceae 1 3 family 1524214 0 1 147 2 genus 3 Vulgatibacter species 1 Vulgatibacter incomptus 1391653 0 144 8 Myxococcaceae family 9 1 1583 0 31 30 Myxococcus genus 5 1 1074 0 32 1 species Myxococcus xanthus 34 0 167 0 83455 224 species 1 Myxococcus stipitatus 1297742 0 194 species 1 Myxococcus hansupus 0 33 459 species 1 Myxococcus fulvus 501 1 83461 0 10 Corallococcus 3 genus Myxococcus macrosporus species 1 215 0 35 1 species Corallococcus coralloides 184914 0 276 738 1524215 0 4 family 738 1 161492 0 13 Anaeromyxobacter genus 4 no rank 2 2620896 0 404 0 404589 217 species 1 Anaeromyxobacter sp. Fw109-5 1 species Anaeromyxobacter sp. K 447217 0 187 0 161493 321 species 1 Anaeromyxobacter dehalogenans 551 224462 0 suborder 3 0 224464 551 1 3 family Kofleriaceae 2 genus 2 4 Haliangium 162027 0 1 549 1 species Haliangium ochraceum 80816 0 545 0 213118 1 2117 19 order 14 Desulfobacterales family 10 13 Desulfobacteraceae 213119 0 1 1452 293 1 896 0 Desulfococcus 6 3 genus 195 0 181663 Desulfococcus oleovorans species 1 Desulfococcus multivorans 1 species 92 0 897 2 genus Desulfatibacillum 3 0 218207 1 568 259354 0 565 1 species Desulfatibacillum alkenivorans Desulfobacterium 2 genus 2 122 1 2295 0 Desulfobacterium autotrophicum 1 species 120 0 2296 2 genus 1 Desulfobacula 0 28222 1 456 1 species Desulfobacula toluolica 0 28223 455 8 family 7 Desulfobulbaceae 0 213121 651 1 96 0 427922 genus 1 Desulfurivibrio alkaliphilus species 1 96 427923 0 Desulfobulbus 4 genus 2 107 1 0 893 103 1986146 0 Desulfobulbus sp. ORNL 1 species 2 genus Desulfocapsa 3 0 53318 1 231 Desulfocapsa sulfexigens species 1 228 65555 0 0 109168 210 1 genus 2 Desulfotalea 4 206 0 84980 Desulfotalea psychrophila 1 species 0 69541 1 2416 order 24 23 Desulfuromonadales Desulfuromonadaceae 12 family 9 742 1 0 213421 1 359 0 890 3 Desulfuromonas genus 3 221 0 1603606 Desulfuromonas soudanensis 1 species 135 0 2614637 1 no rank species 1 Desulfuromonas sp. DDH964 0 1823759 135 18 0 1 371 5 genus Pelobacter 8 0 2620299 84 no rank 1 Pelobacter sp. SFB93 1 species 84 0 1842532 29543 0 109 1 species Pelobacter propionicus 84 19 0 Pelobacter carbinolicus 1 species species 1 Pelobacter acetylenicus 29542 0 86 213422 0 1 1651 family 14 14 Geobacteraceae 392332 0 131 1 2 genus Geoalkalibacter 7 0 483547 124 1 species Geoalkalibacter subterraneus 1506 1 28231 0 Geobacter 17 11 genus 0 1340425 63 species 1 Geobacter anodireducens 385 0 351604 Geobacter uraniireducens species 1 1 species Geobacter sulfurreducens 35554 0 68 Geobacter lovleyi 1 species 96 313985 0 28232 0 240 species 1 Geobacter metallireducens species 1 Geobacter pickeringii 0 345632 102 141 225194 0 Geobacter bemidjiensis 1 species 2 no rank 2627627 0 293 0 443144 103 1 species Geobacter sp. M21 443143 0 190 1 species Geobacter sp. M18 species 1 Geobacter daltonii 1203471 0 101 213462 0 390 1 order 8 Syntrophobacterales 3 family 2 96 213465 0 genus 2 Syntrophobacter 3 29526 0 96 1 species 1 Syntrophobacter fumaroxidans 0 119484 93 Syntrophaceae 5 5 family 291 1 0 213468 2357 0 1 112 2 genus 3 Desulfomonile 2358 0 109 species 1 Desulfomonile tiedjei genus 1 99 43773 0 1 species Syntrophus aciditrophicus 0 316277 99 genus 1 60892 0 75 75 0 60893 Desulfobacca acetoxidans 1 species 0 213115 2140 1 order 23 25 Desulfovibrionales 17 family Desulfovibrionaceae 9 194924 0 1 1859 1 genus 88 0 2582840 Desulfovibrio africanus 1 species 88 873 0 929 1 0 872 18 Desulfovibrio genus 9 64 0 901 Desulfovibrio piger 1 species Candidatus Desulfovibrio trichonymphae 1 species 38 0 1725232 Desulfovibrio alaskensis species 1 97 0 58180 0 876 153 species 1 Desulfovibrio desulfuricans 2593640 0 51 1 no rank 631220 0 51 species 1 Desulfovibrio sp. G11 species 1 Desulfovibrio vulgaris 881 0 264 184 184917 0 Desulfovibrio magneticus 1 species Desulfovibrio fairfieldensis 1 species 60 0 44742 1 genus 0 41707 449 449 0 29546 Lawsonia intracellularis species 1 4 genus 3 Pseudodesulfovibrio 2035811 0 1 223 Pseudodesulfovibrio aespoeensis species 1 83 182210 0 species 1 Pseudodesulfovibrio profundus 57320 0 66 1 species Pseudodesulfovibrio indicus 0 1716143 71 genus 1 2794998 0 161 species 1 Desulfovibrio salexigens 880 0 161 family 3 0 213116 170 0 898 170 1 3 genus 6 Desulfomicrobium 1 species Desulfomicrobium baculatum 899 0 94 70 132132 0 Desulfomicrobium orale 1 species family 2 213117 0 86 1 Desulfohalobium 2 genus 1 86 45662 0 1 species Desulfohalobium retbaense 45663 0 85 order 5 0 213113 739 117942 0 739 1 family 5 Desulfurellaceae 6 genus 2 2 Desulfurella 33001 0 509 1 Desulfurella acetivorans 1 species 507 0 33002 1 Hippea genus 2 1 224 0 84404 species 1 Hippea maritima 0 84405 223 0 29547 1 25087 72 class Epsilonproteobacteria 11 213849 0 1 24283 65 order 47 Campylobacterales family 14 Helicobacteraceae 1 72293 0 3367 1 genus 1 843 0 92 0 844 92 species 1 Wolinella succinogenes 4 Helicobacter 12 genus 3274 1 0 209 0 217 132 species 1 Helicobacter mustelae 0 76936 141 1 species Helicobacter typhlonius 1 no rank 0 2593540 133 0 222136 133 1 species Helicobacter sp. MIT 01-6242 0 214 62 1 species Helicobacter felis 1591 210 0 Helicobacter pylori species 1 Helicobacter himalayensis 1 species 129 0 1591088 0 32025 234 1 species Helicobacter hepaticus 1 species Helicobacter bilis 0 37372 248 180 0 213 Helicobacter cinaedi 1 species 312 138563 0 Helicobacter cetorum 1 species 212 0 108 1 species Helicobacter acinonychis 72294 0 19634 1 family 41 67 Campylobacteraceae no rank 5 2321108 0 5469 genus 1 0 2321187 1319 1 species Arcobacter sp. LPB0137 1850254 0 1319 Arcobacter 41 genus 3 1 2821 0 28196 1126 0 28199 Arcobacter nitrofigilis species 1 Arcobacter butzleri 1 species 1654 0 28197 2321207 0 1329 no rank 1 1329 944547 0 Arcobacter sp. L 1 species 1 12608 0 194 Campylobacter 100 26 genus Campylobacter fetus 1 species 515 196 0 188 75658 0 Campylobacter lanienae species 1 198 0 405 1 species Campylobacter hyointestinalis Campylobacter hominis species 1 248 76517 0 Campylobacter insulaenigrae species 1 595 0 260714 240 0 28898 Campylobacter helveticus 1 species Campylobacter ureolyticus species 1 606 827 0 1 species Campylobacter lari 0 201 1451 1 species Campylobacter jejuni 197 0 1121 no rank 4 0 2593542 1600 378 1660074 0 Campylobacter sp. RM8964 species 1 species 1 Campylobacter sp. RM6137 1660073 0 257 400 1660076 0 Campylobacter sp. RM12175 species 1 species 1 Campylobacter sp. RM16704 1500960 0 565 1 species Campylobacter gracilis 824 0 63 Campylobacter cuniculorum species 1 408 0 374106 0 522485 348 1 species Campylobacter avium 0 1031542 543 species 1 Campylobacter volucris species 1 Campylobacter iguaniorum 1244531 0 315 1 species Campylobacter curvus 0 200 64 0 206 884 1 species Campylobacter sputorum Campylobacter pinnipediorum species 1 774 1965231 0 1 species Campylobacter concisus 0 199 301 Campylobacter subantarcticus 1 species 521 497724 0 Campylobacter peloridis 1 species 544 488546 0 0 195 774 1 species Campylobacter coli genus 9 25 Sulfurospirillum 57665 0 1 1490 0 65553 193 species 1 Sulfurospirillum deleyianum 3 no rank 678 2618290 0 Sulfurospirillum sp. JPD-1 species 1 184 0 220622 species 1 Sulfurospirillum sp. UCH001 0 1581011 273 Sulfurospirillum sp. SL2-1 species 1 221 0 1986224 Sulfurospirillum multivorans species 1 148 0 66821 Sulfurospirillum barnesii 1 species 196 44674 0 1 species Sulfurospirillum cavolei 366522 0 87 163 0 194424 Sulfurospirillum halorespirans 1 species 2771471 0 797 4 family Sulfurimonas 9 3 genus 713 1 0 202746 Sulfurimonas autotrophica species 1 322 0 202747 382 39766 0 Sulfurimonas denitrificans 1 species genus 1 286130 0 84 Sulfuricurvum kujiense species 1 84 148813 0 0 2771472 438 family 5 187 1 0 269260 Nitratifractor 1 2 genus species 1 Nitratifractor salsuginis 0 269261 186 genus 3 7 Sulfurovum 0 265570 1 251 0 2646778 115 1 no rank Sulfurovum sp. NBC37-1 1 species 115 0 387093 species 1 Sulfurovum lithotrophicum 206403 0 129 Nautiliales 3 order 6 1 793 0 235899 family 2 2795691 0 148 genus 2 Nitratiruptor 1 0 269258 148 1 147 2624044 0 no rank 1 147 0 387092 Nitratiruptor sp. SB155-2 species 1 224467 0 1 642 3 family 2 Nautiliaceae 1 640 0 191291 Nautilia 2 genus 2 244787 0 638 1 species Nautilia profundicola 479 1807140 0 class 6 order 6 Acidithiobacillales 14 225057 0 479 1 Acidithiobacillaceae 8 5 family 1 465 225058 0 4 genus 5 Acidithiobacillus 119977 0 1 457 1 species Acidithiobacillus ferrivorans 0 160808 164 Acidithiobacillus ferrooxidans species 1 134 920 0 33059 0 154 1 species Acidithiobacillus caldus 580370 0 231 5 class Mariprofundales 3 order 5 1 231 0 580371 580372 0 228 1 family 4 3 Mariprofundaceae 377315 0 1 225 genus 3 5 Mariprofundus Mariprofundus ferrinatatus species 1 103 1921087 0 Mariprofundus aestuarium species 1 117 1921086 0 1 219908 0 1236 Gammaproteobacteria 378 891 class 177 135615 0 3 order 1 177 868 0 Cardiobacteriaceae 7 family 3 1 170 0 869 Dichelobacter 1 genus 2 1 species Dichelobacter nodosus 870 0 169 1 13134 135619 0 33 Oceanospirillales order 71 255527 0 626 1 5 family Saccharospirillaceae 3 230494 0 1 304 2 genus Reinekea 1 Reinekea forsetii species 1 303 0 1336806 1445504 0 319 1 genus 2 1 Gynuella 1 species Gynuella sunshinyii 0 1445505 318 Oceanospirillaceae 8 12 family 2256 1 135620 0 1 269 48075 0 1 Marinobacterium genus 2 species 1 Marinobacterium aestuarii 0 1821621 268 342 1 188907 0 Oleispira 3 2 genus 0 188908 339 species 1 Oleispira antarctica 1 genus 187492 0 314 0 187493 314 species 1 Thalassolituus oleivorans genus 2 2 Bacterioplanes 0 1537406 286 1 284 1249553 0 Bacterioplanes sanyensis species 1 genus 4 Marinomonas 9 28253 0 1 1037 1 no rank 467 196814 0 Marinomonas sp. MWYL1 1 species 467 0 400668 0 936476 253 1 species Marinomonas posidonica species 1 Marinomonas mediterranea 0 119864 308 1 343 191033 0 Oleiphilaceae 4 family 3 2 genus 3 Oleiphilus 141450 0 1 339 Oleiphilus messinensis species 1 336 141451 0 233 1 0 224379 Hahellaceae 1 family 3 Hahella 1 2 genus 1 232 158481 0 1 species Hahella chejuensis 0 158327 231 1 4583 0 28256 21 Halomonadaceae family 32 no rank 6 114403 0 924 1 454 0 235572 5 Candidatus Portiera genus 2 449 91844 0 Candidatus Portiera aleyrodidarum 1 species 114185 0 170 1 genus 2 Candidatus Carsonella 2 Candidatus Carsonella ruddii 1 species 168 0 114186 0 1495768 1 300 genus 2 1 Candidatus Evansia Candidatus Evansia muelleri species 1 299 0 1495769 160 0 42054 genus 1 Chromohalobacter salexigens species 1 160 0 158080 Cobetia 2 genus 2 231 1 0 204286 229 0 28258 Cobetia marina species 1 3 genus Kushneria 11 504090 0 365 1 species 1 Kushneria marisflavi 157779 0 154 1 species Kushneria konosiri 0 698828 200 1 182 404432 0 4 Salinicola 2 genus species 1 Salinicola tamaricis 0 1771309 178 Halomonas 51 15 genus 1 2535 0 2745 1290 2609666 0 8 no rank Halomonas sp. 'Soap Lake #6' species 1 147 0 1949203 Halomonas sp. R57-5 1 species 164 1610576 0 Halomonas sp. 1513 1 species 149 1883416 0 185 0 1504981 Halomonas sp. KO116 1 species 1971364 0 186 1 species Halomonas sp. GT 0 1118153 118 1 species Halomonas sp. GFAJ-1 Halomonas sp. SF2003 species 1 193 2136172 0 148 1962264 0 Halomonas sp. 'Soap Lake #7' 1 species 1 species Halomonas hydrothermalis 0 115561 155 154 213554 0 Halomonas campaniensis 1 species Halomonas aestuarii 1 species 219 0 1897729 1178482 0 277 species 1 Halomonas huangheensis Halomonas beimenensis 1 species 256 0 475662 species 1 Halomonas chromatireducens 0 507626 133 2 genus 3 Halotalea 376488 0 1 165 Halotalea alkalilenta 1 species 162 0 376489 family 9 8 Alcanivoracaceae 0 224372 1 3943 genus 6 24 Alcanivorax 59753 0 3652 1 268 1306787 0 Alcanivorax pacificus 1 species 363 0 1094342 Alcanivorax xenomutans 1 species 1 species Alcanivorax dieselolei 0 285091 304 1363 59754 0 Alcanivorax borkumensis species 1 1 no rank 2638842 0 1330 species 1 Alcanivorax sp. NBRC 101098 0 1113728 1330 2 Ketobacter 2 genus 283 1 2025617 0 species 1 Ketobacter alkanivorans 1917421 0 281 1 1117 1920240 0 7 Kangiellaceae 6 family 0 261963 1110 1 genus 5 Kangiella 28 species 1 Kangiella geojedonensis 914150 0 244 305 1561924 0 Kangiella profundi 1 species species 1 Kangiella koreensis 0 261964 267 Kangiella sediminilitoris 1 species 266 0 1144748 3 Orbales 5 order 1077 1 1240482 0 1240483 0 1 1074 4 family Orbaceae 6 639 1 1193503 0 Gilliamella 1 genus 2 Gilliamella apicola species 1 638 0 1196095 0 1335631 429 1 genus 1 species Frischella perrara 0 1267021 429 181 1775403 0 3 order 0 568386 4 family 1 Sinobacteraceae 177 0 2689614 2 family 1 177 469322 0 Steroidobacter 2 genus 2 0 465721 175 1 species Steroidobacter denitrificans 48 order 44 Chromatiales 135613 0 1 5817 2 family 0 1738654 174 0 1738655 1 174 genus 2 5 Woeseia 169 0 1548547 Woeseia oceani species 1 1 214 1676141 0 1 Wenzhouxiangellaceae family 3 genus 2 Wenzhouxiangella 3 1676142 0 213 1 210 0 1579979 Wenzhouxiangella marina species 1 Halothiobacillaceae 1 4 family 1 217 0 255526 109262 0 1 216 genus 3 10 Halothiobacillus 1 species Halothiobacillus neapolitanus 0 927 99 no rank 1 0 2636392 107 0 1860122 107 1 species Halothiobacillus sp. LS2 Granulosicoccaceae 4 3 family 1 413 0 449719 0 437504 1 409 2 genus Granulosicoccus 9 0 437505 400 species 1 Granulosicoccus antarcticus 0 72276 1 1932 family 16 15 Ectothiorhodospiraceae 160 1 0 133193 Alkalilimnicola 3 2 genus 0 351052 157 1 species Alkalilimnicola ehrlichii genus 3 2 Spiribacter 0 1335745 1 295 Spiribacter curvatus 1 species 157 0 1335757 1335746 0 136 1 species Spiribacter salinus Thioalkalivibrio 28 6 genus 1 940 0 106633 164 0 108010 Thioalkalivibrio paradoxus species 1 1 species Thioalkalivibrio versutus 0 106634 154 2621013 0 144 1 no rank species 1 Thioalkalivibrio sp. K90mix 396595 0 144 142 186931 0 Thioalkalivibrio nitratireducens species 1 Thioalkalivibrio sulfidiphilus species 1 308 0 1033854 1765964 0 1 227 2 genus 2 Acidihalobacter Acidihalobacter prosperus 1 species 225 160660 0 genus 1 0 1051 187 no rank 1 187 0 2684909 1442136 0 187 species 1 Ectothiorhodospira sp. BSL-9 85108 0 108 1 genus 108 1053 0 Halorhodospira halophila 1 species no rank 2 451214 0 175 genus 2 Thiohalobacter 2 1273155 0 175 1 species 1 Thiohalobacter thiocyanaticus 585455 0 173 13 Chromatiaceae family 17 1 2648 1046 0 1227 0 1 670 genus 4 7 Nitrosococcus 0 473531 338 1 species Nitrosococcus watsonii 158 133539 0 Nitrosococcus halophilus 1 species Nitrosococcus oceani 1 species 167 0 1229 1 333 0 1980513 Candidatus Nitrosoglobus 2 2 genus 331 0 1630141 Candidatus Nitrosoglobus terrae 1 species 2 genus Thiodictyon 6 53392 0 694 1 0 1166950 688 species 1 Candidatus Thiodictyon syntrophicum 1 208 0 85076 Marichromatium 4 genus 2 0 37487 204 1 species Marichromatium purpuratum 0 82569 198 no rank 1 Chromatiaceae bacterium 2141T.STBD.0c.01a species 1 198 0 1978339 200 1 0 13724 Thiocystis 6 genus 2 species 1 Thiocystis violascens 73141 0 194 163 0 85072 genus 1 Allochromatium vinosum species 1 163 1049 0 156885 0 1 169 2 genus 2 Thioflavicoccus species 1 Thioflavicoccus mobilis 0 80679 167 1 6542 135625 0 5 Pasteurellales order 31 30 family Pasteurellaceae 45 712 0 1 6537 745 0 1 1149 genus 3 Pasteurella 7 species 1 Pasteurella multocida 0 747 834 1 species Pasteurella dagmatis 0 754 308 Actinobacillus 10 5 genus 568 1 0 713 Actinobacillus succinogenes species 1 88 67854 0 715 0 175 1 species Actinobacillus pleuropneumoniae 716 0 144 1 species Actinobacillus suis Actinobacillus equuli 1 species 151 718 0 244 0 476528 1 genus 244 47735 0 Bibersteinia trehalosi species 1 0 697331 1 138 2 genus Basfia 2 136 0 157673 [Mannheimia] succiniciproducens species 1 Haemophilus 9 6 genus 1 2371 724 0 730 0 521 1 species [Haemophilus] ducreyi 0 729 214 species 1 Haemophilus parainfluenzae 249188 0 184 1 species Haemophilus pittmaniae Haemophilus influenzae 1 species 1225 0 727 0 2609962 218 no rank 1 1 species Haemophilus sp. oral taxon 036 712310 0 218 200 0 155493 1 genus Gallibacterium anatis 1 species 200 750 0 75984 0 658 1 4 genus Mannheimia 8 no rank 1 2645054 0 174 1432056 0 174 1 species Mannheimia sp. USDA-ARS-USMARC-1261 0 75985 204 1 species Mannheimia haemolytica species 1 Mannheimia varigena 85404 0 272 1 389 0 416916 Aggregatibacter 1 3 genus Aggregatibacter aphrophilus 1 species 191 0 732 Aggregatibacter actinomycetemcomitans 1 species 197 714 0 1 422 214906 0 1 Histophilus genus 2 731 0 421 1 species Histophilus somni Glaesserella 6 2 genus 1 353 2094023 0 0 738 347 species 1 Glaesserella parasuis order 250 124 Enterobacterales 0 91347 1 50269 0 1903414 1 4452 22 family 13 Morganellaceae 1 1002 0 626 11 Xenorhabdus 6 genus 0 351679 195 1 species Xenorhabdus hominickii 0 40577 162 species 1 Xenorhabdus poinarii 0 351671 150 species 1 Xenorhabdus doucetiae 628 0 165 1 species Xenorhabdus nematophila 1 species Xenorhabdus bovienii 0 40576 319 Morganella 10 2 genus 203 1 581 0 Morganella morganii species 1 193 0 582 1 1190 0 583 5 Proteus genus 3 Proteus mirabilis 1 species 742 584 0 Proteus vulgaris species 1 443 585 0 Photorhabdus 4 genus 4 731 1 0 29487 Photorhabdus temperata species 1 188 574560 0 1 species Photorhabdus luminescens 29488 0 223 0 291112 316 1 species Photorhabdus asymbiotica genus 4 6 Providencia 586 0 820 1 0 126385 177 species 1 Providencia alcalifaciens species 1 Providencia stuartii 0 588 353 species 1 Providencia rettgeri 0 587 284 1 493 0 637 Arsenophonus 5 genus 2 488 634113 0 Arsenophonus symbiont of Lipoptena fortisetosa 1 species 1 7699 0 1903411 17 Yersiniaceae family 37 4354 1 0 629 Yersinia 54 genus 13 189 29483 0 Yersinia aldovae species 1 397 0 29484 Yersinia frederiksenii 1 species species 1 Yersinia ruckeri 29486 0 198 147 0 631 Yersinia intermedia 1 species Yersinia kristensenii species 1 151 0 28152 1 species Yersinia rohdei 29485 0 119 2257 1649845 0 species group 3 1155 367190 0 Yersinia similis 1 species Yersinia pseudotuberculosis 1 species 472 0 633 Yersinia pestis species 1 630 0 632 1 species Yersinia aleksiciae 263819 0 126 1 no rank 0 2653513 133 133 0 1839800 Yersinia sp. FDAARGOS_228 1 species species 1 Yersinia enterocolitica 0 630 583 4 genus 6 Rahnella 0 34037 1 470 2 no rank 376 0 2635087 281 0 1805933 Rouxiella sp. ERMR1:05 species 1 95 0 741091 Rahnella sp. Y9602 species 1 species 1 Rahnella aquatilis 0 34038 88 Serratia 80 genus 16 2673 1 0 613 251 47917 0 Serratia fonticola species 1 species 1 Serratia rubidaea 61652 0 85 100 61651 0 Serratia ficaria species 1 126 0 614 Serratia liquefaciens species 1 2647522 0 948 no rank 8 Serratia sp. AS13 species 1 107 0 768493 0 104623 140 1 species Serratia sp. ATCC 39006 species 1 Serratia sp. FS14 0 1327989 129 107 768490 0 Serratia sp. AS12 species 1 species 1 Serratia sp. FGI94 0 671990 68 1 species Serratia sp. SSNIH1 1758196 0 103 2033438 0 77 species 1 Serratia sp. MYb239 488142 0 217 1 species Serratia sp. SCBI 1 species Serratia plymuthica 0 82996 273 732 0 615 Serratia marcescens 1 species Serratia proteamaculans 1 species 78 0 28151 0 1745211 96 1 genus 96 1639108 0 Chania multitudinisentens 1 species 929812 0 87 1 genus species 1 Gibbsiella quercinecans 0 929813 87 0 1565532 2 1 genus Rouxiella no rank 2 451511 0 204 1 204 0 702 2 Plesiomonas genus 2 202 0 703 Plesiomonas shigelloides species 1 family 14 8 Hafniaceae 1903412 0 1 4291 genus 3 Hafnia 6 568 0 1 458 1 no rank 2621980 0 110 Hafnia sp. CBA7124 species 1 110 1848580 0 342 569 0 Hafnia alvei species 1 Obesumbacterium 1 genus 2 124 1 0 82982 Obesumbacterium proteus 1 species 123 0 82983 0 635 1 3701 genus 8 34 Edwardsiella 0 636 2844 species 1 Edwardsiella tarda Edwardsiella piscicida 1 species 106 0 1263550 Edwardsiella hoshinae species 1 73 0 93378 Edwardsiella ictaluri species 1 144 67780 0 2676541 0 319 no rank 2 175 0 1578828 Edwardsiella sp. EA181011 1 species Edwardsiella sp. LADL05-105 species 1 144 1650654 0 1 species Edwardsiella anguillarum 0 1821960 181 0 1903410 1 2697 family 20 Pectobacteriaceae 10 84565 0 1 781 genus 5 31 Sodalis 378 0 1929246 Sodalis endosymbiont of Henestaris halophilus 1 species species 1 Candidatus Sodalis pierantonius 0 1486991 148 105 63612 0 Sodalis glossinidius species 1 119 0 1239307 Sodalis praecaptivus 1 species 6 genus 22 Pectobacterium 0 122277 1 994 1905730 0 299 1 species Pectobacterium parmentieri 0 2042057 115 1 species Pectobacterium polaris 142 55208 0 Pectobacterium wasabiae species 1 Pectobacterium atrosepticum 1 species 120 29471 0 Pectobacterium carotovorum species 1 296 554 0 6 genus 10 Dickeya 204037 0 1 766 87 0 204039 Dickeya dianthicola species 1 1778540 0 95 1 species Dickeya fangzhongdai 204042 0 316 1 species Dickeya zeae 1 species Dickeya solani 0 1089444 171 87 0 204038 Dickeya dadantii 1 species 1 146 71655 0 2 Brenneria 2 genus 144 0 1109412 Brenneria goodwinii 1 species 1 9216 0 1903409 Erwiniaceae 33 28 family 2 genus Buchnera 10 0 32199 5291 1 5281 9 0 Buchnera aphidicola 1 species 1 Tatumella genus 2 114 1 82986 0 species 1 Tatumella citrea 53336 0 113 0 51228 1097 1 genus 2 11 Wigglesworthia 1 species Wigglesworthia glossinidia 51229 0 1086 53335 0 1 1646 genus 11 64 Pantoea 240 470934 0 Pantoea vagans 1 species Pantoea alhagi 1 species 96 0 1891675 364 0 1235990 Candidatus Pantoea carbekii species 1 0 1076550 90 1 species Pantoea rwandensis 0 553 192 1 species Pantoea ananatis 98 0 66269 Pantoea stewartii species 1 3 no rank 2630326 0 337 Pantoea sp. PSNIH1 1 species 104 0 1484158 Pantoea sp. PSNIH2 species 1 84 1484157 0 species 1 Pantoea sp. At-9b 592316 0 149 165 1654067 0 1 species group Pantoea agglomerans 1 species 165 549 0 genus 2 2100764 0 212 0 665914 75 species 1 Pantoea gaviniae Pantoea calida 1 species 137 665913 0 0 551 1 823 8 genus 12 Erwinia 81 0 338565 Erwinia tasmaniensis 1 species 0 552 92 1 species Erwinia amylovora 0 2622719 84 1 no rank 84 0 215689 Erwinia sp. Ejp617 1 species 1 species Erwinia pyrifoliae 0 79967 83 213 0 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae 1 species 1619313 0 104 species 1 Erwinia gerundensis Erwinia billingiae 1 species 154 182337 0 Budviciaceae 4 family 3 1 142 1903416 0 4 Pragia 2 genus 138 1 82984 0 1 species Pragia fontium 0 82985 134 123 family Enterobacteriaceae 138 543 0 21444 1 Enterobacter 87 22 genus 2035 1 547 0 species group 12 1435 354276 0 species 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 0 1812935 26 no rank 3 135 2757714 0 63 0 2077137 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 species 1 39 0 2027919 Enterobacter cloacae complex bacterium species 1 Enterobacter cloacae complex sp. ECNIH7 species 1 33 1915310 0 60 299767 0 Enterobacter ludwigii 1 species Enterobacter cloacae 1 species 605 550 0 187 61645 0 Enterobacter asburiae species 1 Enterobacter hormaechei 249 3 species 1 327 0 158836 1 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 0 1812934 44 34 0 1296536 Enterobacter xiangfangensis 1 subspecies 37 208224 0 Enterobacter kobei species 1 1 species Enterobacter cancerogenus 0 69218 58 2608935 0 513 9 no rank 33 1868135 0 Enterobacter sp. HK169 species 1 40 0 2051905 Enterobacter sp. CRENT-193 1 species Enterobacter sp. E20 1 species 40 0 1560339 0 1166130 93 species 1 Enterobacter sp. R4-368 1827481 0 53 1 species Enterobacter sp. ODB01 Enterobacter sp. SA187 species 1 69 0 1914861 38 1977566 0 Enterobacter sp. Crenshaw 1 species 1692238 0 66 species 1 Enterobacter sp. FY-07 81 0 399742 Enterobacter sp. 638 1 species 2 Salmonella 3 genus 1 2261 0 590 2031 0 28901 Salmonella enterica 1 species 54736 0 228 species 1 Salmonella bongori Leclercia 8 genus 4 294 1 0 83654 0 83655 95 species 1 Leclercia adecarboxylata no rank 2 2627398 0 191 Leclercia sp. LSNIH3 1 species 98 1920116 0 93 0 1920114 Leclercia sp. LSNIH1 species 1 3822 0 191675 22 no rank 22 clade 0 84563 3822 4 clade 547 0 146507 102 0 1199245 secondary endosymbiont of Ctenarytaina eucalypti 1 species 221 1 568987 0 Candidatus Hamiltonella 1 genus 2 species 1 Candidatus Hamiltonella defensa 138072 0 220 secondary endosymbiont of Heteropsylla cubana 1 species 224 0 134287 Candidatus Gullanella 1 genus 2 1 184 1906661 0 Candidatus Gullanella endobia 1 species 183 0 1070130 3 Candidatus Tachikawaea 2 genus 493 1 0 1682492 Candidatus Tachikawaea gelatinosa 1 species 490 1410383 0 1 clade 199891 0 171 171 1835721 0 secondary endosymbiont of Trabutina mannipara species 1 genus 2 Candidatus Doolittlea 4 1906657 0 1 68 0 1778262 64 1 species Candidatus Doolittlea endobia 0 1906660 1 254 genus 2 5 Candidatus Mikella 0 1778264 249 1 species Candidatus Mikella endobia 0 84564 2041 clade 7 203804 0 1 2041 7 genus Candidatus Blochmannia 28 no rank 2 642 0 711328 268 1505596 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 species 374 1505597 0 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1 species 401 0 251535 Candidatus Blochmannia vafer species 1 285 251542 0 Candidatus Blochmannia chromaiodes species 1 Candidatus Blochmannia floridanus 1 species 395 203907 0 Candidatus Blochmannia pennsylvanicus 1 species 290 101534 0 genus 2 Candidatus Hoaglandella 3 0 1906659 1 64 61 1778263 0 Candidatus Hoaglandella endobia 1 species 107 0 579 1 genus Kluyvera intermedia 1 species 107 61648 0 4 Shigella 4 genus 178 1 620 0 Shigella dysenteriae 1 species 83 0 622 no rank 1 45 2629414 0 Shigella sp. PAMC 28760 species 1 45 1813821 0 species 1 Shigella flexneri 0 623 46 1 genus 1048757 0 106 species 1 Candidatus Moranella endobia 1048758 0 106 3691 1 0 570 43 Klebsiella genus 10 1463165 0 114 species 1 Klebsiella quasipneumoniae 0 548 806 1 species Klebsiella aerogenes 1134687 0 265 species 1 Klebsiella michiganensis 0 571 465 1 species Klebsiella oxytoca 1522 573 0 Klebsiella pneumoniae 1 species species 1 Klebsiella quasivariicola 0 2026240 98 195 2608929 0 2 no rank 1 species Klebsiella sp. LTGPAF-6F 1905288 0 108 87 0 1934254 Klebsiella sp. M5al 1 species Klebsiella variicola species 1 183 0 244366 1 411 409304 0 Candidatus Ishikawaella 2 genus 2 Candidatus Ishikawaella capsulata species 1 409 168169 0 genus 3 1 Raoultella 0 160674 1 306 0 575 65 species 1 Raoultella planticola Raoultella ornithinolytica 1 species 240 0 54291 genus 14 40 Citrobacter 544 0 1589 1 no rank 2 115 0 2644389 65 0 1920110 Citrobacter sp. CFNIH10 1 species 50 1702170 0 Citrobacter sp. FDAARGOS_156 1 species 1 species Citrobacter amalonaticus 0 35703 157 1 species Citrobacter koseri 0 545 102 Citrobacter rodentium species 1 94 0 67825 0 1344959 902 species group 7 Citrobacter freundii complex sp. CFNIH3 species 1 73 2077147 0 82 2077148 0 Citrobacter freundii complex sp. CFNIH4 1 species 48 2066049 0 Citrobacter freundii complex sp. CFNIH2 species 1 381 0 546 Citrobacter freundii 1 species 0 57706 111 1 species Citrobacter braakii Citrobacter freundii complex sp. CFNIH9 species 1 69 2077149 0 138 67827 0 Citrobacter werkmanii 1 species Citrobacter farmeri 1 species 179 0 67824 4 Candidatus Riesia genus 2 1 340 401618 0 1 species Candidatus Riesia pediculicola 0 401619 336 0 561 3382 1 5 genus Escherichia 5 Escherichia albertii species 1 184 0 208962 species 1 Escherichia marmotae 1499973 0 56 1 species Escherichia fergusonii 0 564 73 species 1 Escherichia coli 0 562 3064 7 Kosakonia genus 5 1 427 0 1330547 Kosakonia cowanii species 1 99 208223 0 species 1 Kosakonia oryzae 497725 0 98 species 1 Kosakonia radicincitans 0 283686 106 Kosakonia sacchari 1 species 117 0 1158459 0 1330546 290 1 3 genus Pluralibacter 4 Pluralibacter gergoviae 1 species 172 0 61647 0 1334193 114 1 species [Enterobacter] lignolyticus 413496 0 1 629 8 genus 14 Cronobacter 0 413502 66 species 1 Cronobacter turicensis Cronobacter condimenti 1 species 75 1163710 0 species 1 Cronobacter malonaticus 413503 0 56 83 413501 0 Cronobacter muytjensii species 1 1 species Cronobacter universalis 0 535744 65 Cronobacter dublinensis 1 species 111 413497 0 1 species Cronobacter sakazakii 0 28141 159 Lelliottia 2 genus 4 1 285 1330545 0 species 1 Lelliottia nimipressuralis 0 69220 64 69 1907578 0 Lelliottia jeotgali 1 species 61646 0 150 species 1 Lelliottia amnigena 92 1 1335483 0 2 Shimwellia genus 2 Shimwellia blattae species 1 90 563 0 0 158483 271 1 genus 2 1 Cedecea 1 species Cedecea neteri 158822 0 270 5 no rank 790 0 36866 77 0 1920128 Enterobacteriaceae bacterium ENNIH3 species 1 Enterobacteriaceae bacterium ENNIH2 1 species 73 0 1920109 1 species Enterobacteriaceae bacterium strain FGI 57 0 693444 56 species 1 Enterobacteriaceae bacterium ENNIH1 0 2066051 100 484 891974 0 Plautia stali symbiont 1 species 0 135624 1 3860 29 order Aeromonadales 14 Aeromonadaceae 27 28 family 3846 1 84642 0 197 1 347533 0 Zobellella 2 genus 2 Zobellella denitrificans 1 species 195 0 347534 1 349 225143 0 4 Oceanisphaera genus 3 1903694 0 166 species 1 Oceanisphaera sp. AMac2203 179 1416627 0 Oceanisphaera profunda 1 species Oceanimonas 2 genus 2 175 1 129577 0 1 no rank 173 0 2636315 Oceanimonas sp. GK1 1 species 173 511062 0 18 genus Aeromonas 106 642 0 2969 1 species 1 Aeromonas hydrophila 0 644 685 0 652 100 1 species Aeromonas schubertii 0 645 374 species 1 Aeromonas salmonicida 558964 0 119 1 species Aeromonas aquatica 1 species Aeromonas media 651 0 96 0 948519 96 1 species Aeromonas rivipollensis 900 0 257493 8 no rank 1 species Aeromonas sp. CA23 2033032 0 137 75 0 1920107 Aeromonas sp. ASNIH7 1 species 1 species Aeromonas sp. CU5 0 2033033 105 0 1636609 166 species 1 Aeromonas sp. ASNIH4 71 1636608 0 Aeromonas sp. ASNIH3 1 species Aeromonas sp. ASNIH2 1 species 100 0 1636607 species 1 Aeromonas sp. ASNIH1 1636606 0 134 species 1 Aeromonas sp. ASNIH5 1758179 0 112 species 1 Aeromonas veronii 654 0 305 0 196024 118 species 1 Aeromonas dhakensis 70 0 648 Aeromonas caviae 1 species 129 1 43947 0 1 Tolumonas 2 genus 1 species Tolumonas auensis 0 43948 128 no rank 2 0 33811 388 endosymbiont of unidentified scaly snail isolate Monju 1 species 150 1248727 0 238 0 83406 gamma proteobacterium HdN1 species 1 order 104 48 Alteromonadales 0 135622 1 30286 9 Shewanellaceae 25 family 1 7595 267890 0 1 7586 22 0 85 Shewanella genus 24 389 56812 0 Shewanella frigidimarina 1 species 1 species Shewanella piezotolerans 0 404011 267 0 359303 103 species 1 Shewanella loihica 144 60478 0 Shewanella amazonensis 1 species 1 species Shewanella woodyi 0 60961 407 507 0 60217 Shewanella violacea species 1 177 0 70863 Shewanella oneidensis species 1 Shewanella pealeana 1 species 205 0 70864 1 species Shewanella sediminis 0 271097 290 Shewanella baltica species 1 705 0 62322 Shewanella halifaxensis 1 species 1335 271098 0 no rank 6 1205 0 196818 1 species Shewanella sp. MR-7 60481 0 183 Shewanella sp. ANA-3 1 species 209 94122 0 Shewanella sp. Pdp11 species 1 220 0 2059264 Shewanella sp. W3-18-1 species 1 236 0 351745 0 2029986 179 species 1 Shewanella sp. WE21 60480 0 178 species 1 Shewanella sp. MR-4 Shewanella denitrificans 1 species 249 192073 0 273 0 24 Shewanella putrefaciens species 1 0 260364 128 1 species Shewanella marisflavi Shewanella psychrophila species 1 472 0 225848 2018305 0 154 1 species Shewanella bicestrii Shewanella japonica 1 species 491 93973 0 125 0 267892 2 family 44011 0 1 125 2 genus 4 Ferrimonas 121 44012 0 Ferrimonas balearica species 1 267893 0 637 1 family 6 Idiomarinaceae 2 1 635 0 135575 Idiomarina 17 genus 5 0 135577 171 1 species Idiomarina loihiensis 311 0 2614829 no rank 2 1 species Idiomarina sp. OT37-5b 2100422 0 140 171 2055892 0 Idiomarina sp. X4 1 species 0 1096243 136 1 species Idiomarina piscisalsi 998 267894 0 3 family 998 1 0 67572 3 Psychromonas 3 genus 1 species Psychromonas ingrahamii 0 357794 533 462 0 2614957 no rank 1 species 1 Psychromonas sp. CNPT3 314282 0 462 1 7921 0 72275 Alteromonadaceae 24 30 family 34 Marinobacter 10 genus 1 1887 0 2742 Marinobacter adhaerens 1 species 183 1033846 0 Marinobacter hydrocarbonoclasticus species 1 229 0 2743 330734 0 195 species 1 Marinobacter psychrophilus 1 species Marinobacter salinus 0 1874317 132 154 1420916 0 Marinobacter similis 1 species no rank 3 545 0 83889 Marinobacter sp. LQ44 1 species 190 0 1749259 species 1 Marinobacter sp. CP1 1671721 0 166 species 1 Marinobacter sp. BSs20148 490759 0 189 0 1420917 415 species 1 Marinobacter salarius Paraglaciecola 1 2 genus 1 626 1621534 0 Paraglaciecola psychrophila species 1 625 326544 0 26 Alteromonas 10 genus 4305 1 0 226 287094 0 268 1 species Alteromonas addita 0 2614992 753 3 no rank 2058133 0 261 1 species Alteromonas sp. MB-3u-76 1917158 0 248 species 1 Alteromonas sp. RW2A1 Alteromonas sp. Mac1 1 species 244 1777491 0 1 species Alteromonas stellipolaris 233316 0 360 Alteromonas mediterranea species 1 587 314275 0 species 1 Alteromonas macleodii 28108 0 1822 1 species Alteromonas australica 589873 0 244 species 1 Alteromonas naphthalenivorans 0 715451 245 Glaciecola 4 3 genus 611 1 0 89404 1 no rank 2618684 0 288 0 983545 288 1 species Glaciecola sp. 4H-3-7+YE-5 Glaciecola nitratireducens 1 species 319 300231 0 234 1 261825 0 Agarivorans 2 genus 2 Agarivorans gilvus 1 species 232 0 680279 234 1 0 1751872 Lacimicrobium 2 2 genus 1526571 0 232 1 species Lacimicrobium alkaliphilum Pseudoalteromonadaceae 12 25 family 1 8895 267888 0 169 Pseudoalteromonas genus 24 1 8883 53246 0 Pseudoalteromonas aliena species 1 390 247523 0 0 28109 357 species 1 Pseudoalteromonas nigrifaciens 1 species Pseudoalteromonas phenolica 0 161398 449 0 1348114 402 species 1 Pseudoalteromonas piratica Pseudoalteromonas spongiae species 1 463 298657 0 Pseudoalteromonas piscicida species 1 276 0 43662 5 no rank 2442 0 194690 1 species Pseudoalteromonas sp. SM9913 0 234831 301 species 1 Pseudoalteromonas sp. 1_2015MBL_MicDiv 0 1720343 401 1 species Pseudoalteromonas sp. Bsw20308 283699 0 369 323 1761891 0 Pseudoalteromonas sp. 13-15 species 1 1 species Pseudoalteromonas sp. NC201 1514074 0 1048 species 1 Pseudoalteromonas luteoviolacea 0 43657 337 Pseudoalteromonas arctica 1 species 368 394751 0 species 1 Pseudoalteromonas atlantica 0 288 554 1 species Pseudoalteromonas tunicata 0 314281 441 species 1 Pseudoalteromonas haloplanktis 228 0 325 269 267375 0 Pseudoalteromonas marina 1 species 0 43658 234 species 1 Pseudoalteromonas rubra 1 species Pseudoalteromonas issachenkonii 0 152297 260 278 176102 0 Pseudoalteromonas agarivorans species 1 1 species Pseudoalteromonas espejiana 0 28107 294 species 1 Pseudoalteromonas tetraodonis 0 43659 259 species 1 Pseudoalteromonas translucida 166935 0 316 Colwelliaceae 11 family 9 1 3479 0 267889 0 1518149 1 488 2 genus Thalassotalea 2 1 species Thalassotalea crassostreae 1763536 0 486 1 2980 28228 0 Colwellia 13 6 genus species 1 Colwellia beringensis 1967665 0 629 3 no rank 196834 0 1738 501 58049 0 Colwellia sp. MT41 species 1 species 1 Colwellia sp. PAMC 21821 0 1816219 681 0 1816218 556 1 species Colwellia sp. PAMC 20917 600 28229 0 Colwellia psychrerythraea 1 species 1 588 267891 0 Moritellaceae 7 3 family 1 581 58050 0 4 Moritella genus 2 577 80854 0 Moritella viscosa 1 species 12 Cellvibrionales 29 order 4874 1 1706369 0 1 1036 1706375 0 10 Spongiibacteraceae 6 family 1 genus 415 1084558 0 species 1 Oceanicoccus sagamiensis 716816 0 415 630749 0 1 270 2 genus 2 Spongiibacter 0 2631504 268 1 no rank 268 0 1620392 Spongiibacter sp. IMCC21906 species 1 0 1434050 1 341 genus 2 Zhongshania 8 0 1470434 333 1 species Zhongshania aliphaticivorans Halieaceae 2 4 family 1 922 1706372 0 3 genus Halioglobus 13 1217416 0 920 1 species 1 Halioglobus japonicus 0 930805 494 413 930806 0 Halioglobus pacificus 1 species 1 2024 0 1706371 12 Cellvibrionaceae 13 family 447467 0 237 1 2 genus 1 Simiduia 0 447471 236 1 species Simiduia agarivorans genus 4 Cellvibrio 4 10 0 1 729 Cellvibrio japonicus 1 species 263 0 155077 2 no rank 462 0 2624793 species 1 Cellvibrio sp. PSBB006 0 1987723 216 246 1945512 0 Cellvibrio sp. PSBB023 1 species 2 genus Agarilytica 2 2036021 0 1 476 474 1737490 0 Agarilytica rhodophyticola 1 species 0 316625 1 310 2 genus Saccharophagus 1 309 86304 0 Saccharophagus degradans species 1 2425 0 260 1 genus 2 2 Teredinibacter 258 2426 0 Teredinibacter turnerae species 1 1 880 0 1706373 Microbulbiferaceae 3 family 5 27 Microbulbifer genus 4 877 1 48073 0 0 1769779 283 species 1 Microbulbifer aggregans 250 260552 0 Microbulbifer agarilyticus 1 species Microbulbifer thermotolerans species 1 317 0 252514 208 1934945 0 order 3 3 family 1 Immundisolibacteraceae 1934946 0 1 208 2 genus Immundisolibacter 3 0 1934947 1 207 204 0 1810504 Immundisolibacter cernigliae species 1 order 5 Acidiferrobacterales 1 1692040 0 1 403 family 4 7 Acidiferrobacteraceae 1692041 0 1 402 0 1692042 239 1 genus 239 0 1675686 Sulfurifustis variabilis species 1 Sulfuricaulis 3 genus 2 1 156 0 1744881 153 1620215 0 Sulfuricaulis limicola species 1 72274 0 33365 1 129 order Pseudomonadales 82 family 86 Pseudomonadaceae 93 135621 0 1 19398 subfamily 3 430 0 351 genus 3 Azotobacter 2 0 352 430 1 0 354 139 1 species Azotobacter vinelandii 0 353 289 1 species Azotobacter chroococcum 286 0 18637 1 genus 80 445 Pseudomonas 1216 136846 0 species group 2 1071 0 578833 1 species subgroup 1071 316 0 Pseudomonas stutzeri 1 species 145 0 74829 Pseudomonas balearica species 1 1853130 0 189 1 species Pseudomonas silesiensis 1 species Pseudomonas knackmussii 0 65741 122 136849 0 1943 species group 8 1 no rank 151 0 2775504 1206777 0 151 species 1 Pseudomonas sp. Lz4W 103 33069 0 Pseudomonas viridiflava species 1 0 46257 103 1 species Pseudomonas avellanae 0 251695 903 species subgroup 1 317 0 903 species 1 Pseudomonas syringae Pseudomonas cichorii species 1 110 0 36746 251698 0 316 2 species subgroup 177 0 29438 Pseudomonas savastanoi 1 species 1 species Pseudomonas amygdali 0 47877 139 251701 0 257 species 1 Pseudomonas syringae group genomosp. 3 species 1 Pseudomonas alkylphenolica 0 237609 105 2292 0 136841 species group 6 43263 0 128 1 species Pseudomonas alcaligenes 158 53412 0 Pseudomonas resinovorans species 1 species 1 Pseudomonas citronellolis 53408 0 308 1 species subgroup 0 1232139 209 209 1149133 0 Pseudomonas furukawaii species 1 287 0 958 1 species Pseudomonas aeruginosa 1 species Pseudomonas mendocina 300 0 531 Pseudomonas brassicacearum species 1 207 0 930166 1 species Pseudomonas lurida 0 244566 74 0 1788301 133 1 species Pseudomonas versuta 92 0 219572 Pseudomonas antarctica species 1 194 0 1583341 Pseudomonas cerasi species 1 216142 0 98 1 species Pseudomonas rhizosphaerae species 1 Pseudomonas psychrotolerans 0 237610 177 2657 0 136845 species group 6 1483 303 0 Pseudomonas putida species 1 95 70775 0 Pseudomonas plecoglossicida 1 species Pseudomonas monteilii 1 species 352 76759 0 Pseudomonas oryzihabitans species 1 165 47885 0 153 47880 0 Pseudomonas fulva species 1 1 species Pseudomonas mosselii 0 78327 409 species 1 Pseudomonas cremoricolorata 0 157783 114 836 0 136842 species group 2 Pseudomonas chlororaphis species 1 606 587753 0 Pseudomonas fragi species 1 230 0 296 1 species Pseudomonas frederiksbergensis 0 104087 280 178 0 157782 Pseudomonas parafulva species 1 1 species Pseudomonas entomophila 0 312306 98 3062 136843 0 9 species group 76761 0 88 1 species Pseudomonas veronii 0 294 1773 species 1 Pseudomonas fluorescens 193 380021 0 Pseudomonas protegens species 1 Pseudomonas poae species 1 86 200451 0 1 species Pseudomonas orientalis 0 76758 75 0 47879 85 1 species Pseudomonas corrugata Pseudomonas trivialis species 1 347 200450 0 species 1 Pseudomonas mandelii 75612 0 95 Pseudomonas azotoformans 1 species 320 47878 0 no rank 30 3731 196821 0 species 1 Pseudomonas sp. MRSN12121 1611770 0 116 1 species Pseudomonas sp. ATCC 13867 0 1294143 153 1415630 0 223 1 species Pseudomonas sp. TKP Pseudomonas sp. PONIH3 species 1 94 0 1636610 1827300 0 79 species 1 Pseudomonas sp. MYb193 1 species Pseudomonas sp. LH1G9 2083055 0 92 1 species Pseudomonas sp. UW4 0 1207075 89 1 species Pseudomonas sp. NC02 0 2067572 145 Pseudomonas sp. VLB120 species 1 95 69328 0 species 1 Pseudomonas sp. S-6-2 1931241 0 171 108 0 2083053 Pseudomonas sp. SWI44 species 1 Pseudomonas sp. URMO17WK12:I11 species 1 181 1283291 0 2069256 0 93 1 species Pseudomonas sp. XWY-1 2083054 0 107 species 1 Pseudomonas sp. LG1D9 91 1649877 0 Pseudomonas sp. CCOS 191 species 1 1 species Pseudomonas sp. TCU-HL1 0 1856685 145 2049589 0 108 species 1 Pseudomonas sp. HLS-6 Pseudomonas sp. LPH1 1 species 147 1898684 0 Pseudomonas sp. GR 6-02 species 1 120 0 1659194 Pseudomonas sp. Os17 1 species 118 0 1500686 species 1 Pseudomonas sp. SWI6 0 2083051 121 Pseudomonas sp. SWI36 1 species 117 0 2083052 Pseudomonas sp. JY-Q 1 species 85 0 1338689 species 1 Pseudomonas sp. DR 5-09 1534110 0 108 species 1 Pseudomonas sp. StFLB209 0 1028989 127 species 1 Pseudomonas sp. M30-35 0 1981174 201 species 1 Pseudomonas sp. FDAARGOS_380 2018067 0 95 1 species Pseudomonas sp. CC6-YY-74 0 1930532 215 Pseudomonas sp. St29 1 species 109 0 1500687 1259844 0 78 species 1 Pseudomonas sp. FGI182 1 species Pseudomonas koreensis 0 198620 238 156 101564 0 Pseudomonas alcaliphila 1 species 238 1 0 1849530 Oblitimonas 8 2 genus Oblitimonas alkaliphila species 1 230 1697053 0 family 42 Moraxellaceae 33 0 468 1 13885 Acinetobacter 108 25 genus 1 10366 0 469 Acinetobacter haemolyticus species 1 384 0 29430 0 40216 219 species 1 Acinetobacter radioresistens 362 106648 0 Acinetobacter bereziniae 1 species species 1 287 202950 0 Acinetobacter sp. ADP1 1 strain 287 62977 0 species 1 Acinetobacter larvae 1789224 0 260 species 1 Acinetobacter oleivorans 0 1148157 390 108981 0 229 1 species Acinetobacter schindleri 1324350 0 493 1 species Acinetobacter equi Acinetobacter johnsonii species 1 217 0 40214 0 487316 286 species 1 Acinetobacter soli 0 909768 4678 species group 5 350 1785128 0 Acinetobacter lactucae 1 species 1 species Acinetobacter calcoaceticus 471 0 693 0 48296 1476 1 species Acinetobacter pittii 0 106654 504 species 1 Acinetobacter nosocomialis Acinetobacter baumannii 1 species 1655 0 470 Acinetobacter junii species 1 456 40215 0 7 no rank 1840 0 196816 261 0 2079596 Acinetobacter sp. SWBY1 species 1 1407071 0 272 species 1 Acinetobacter sp. TGL-Y2 190 1808001 0 Acinetobacter sp. LoGeW2-3 1 species Acinetobacter sp. NCu2D-2 1 species 254 0 1608473 Acinetobacter sp. TTH0-4 species 1 290 0 1646498 1758189 0 286 species 1 Acinetobacter sp. ACNIH2 0 1636603 287 species 1 Acinetobacter sp. ACNIH1 species 1 Acinetobacter indicus 0 756892 157 genus 5 5 Moraxella 475 0 1 1209 0 34062 501 species 1 Moraxella osloensis 1 species Moraxella ovis 29433 0 132 243 0 386891 Moraxella bovoculi 1 species 328 0 480 Moraxella catarrhalis 1 species 2277 1 497 0 48 Psychrobacter genus 11 Psychrobacter urativorans species 1 222 45610 0 Psychrobacter alimentarius species 1 290 261164 0 181 334543 0 Psychrobacter arcticus 1 species 196806 0 1338 no rank 6 Psychrobacter sp. P11G5 1 species 223 1699624 0 197 0 571800 Psychrobacter sp. G 1 species Psychrobacter sp. DAB_AL43B 1 species 218 1028416 0 288 0 349106 Psychrobacter sp. PRwf-1 species 1 211 1699622 0 Psychrobacter sp. P2G3 1 species Psychrobacter sp. AntiMn-1 1 species 201 0 1720344 Psychrobacter cryohalolentis 1 species 198 0 330922 1 1583 135618 0 Methylococcales 6 order 13 1577 1 403 0 Methylococcaceae 7 family 12 genus 2 1 Methylomicrobium 0 39773 333 1 0 271065 332 species 1 Methylomicrobium alcaliphilum 1 108 0 413 2 Methylococcus genus 2 106 414 0 Methylococcus capsulatus 1 species 1 181 762296 0 Methylovulum 1 2 genus 180 0 1704499 Methylovulum psychrotolerans species 1 5 genus Methylomonas 23 416 0 1 948 Methylomonas denitrificans 1 species 355 0 1538553 196 2608980 0 1 no rank Methylomonas sp. DH-1 1 species 196 1727196 0 species 1 Methylomonas methanica 0 421 193 species 1 Methylomonas koyamae 702114 0 181 7561 1 0 118969 Legionellales 14 21 order 0 444 1 6517 15 family Legionellaceae 7 1 6199 445 0 Legionella 44 genus 12 0 452 193 species 1 Legionella spiritensis Legionella sainthelensi 1 species 562 0 28087 1 species Legionella oakridgensis 29423 0 337 1 species Legionella waltersii 0 66969 387 species 1 Legionella hackeliae 449 0 421 species 1 Legionella fallonii 0 96230 567 Legionella lansingensis species 1 324 45067 0 Legionella longbeachae species 1 546 450 0 0 2005262 626 species 1 Legionella endosymbiont of Polyplax serrata 0 446 1762 1 species Legionella pneumophila Legionella clemsonensis species 1 430 1867846 0 311 1 0 465 Tatlockia 5 2 genus Tatlockia micdadei species 1 306 451 0 Coxiellaceae 7 5 family 1 1030 0 118968 11 Coxiella genus 3 1 684 0 776 343 2676648 0 1 no rank 1 species Coxiella endosymbiont of Amblyomma americanum 325775 0 343 330 777 0 Coxiella burnetii 1 species 1 no rank 339 134284 0 339 0 1592897 Coxiella-like endosymbiont species 1 0 118884 4190 13 no rank 349742 0 1 221 2 genus 4 Sedimenticola 1 species Sedimenticola thiotaurini 1543721 0 217 genus 3 Candidatus Thioglobus 20 655184 0 1 1350 1 species Candidatus Thioglobus autotrophicus 0 1705394 439 891 0 1427364 Candidatus Thioglobus singularis 1 species clade 1 198346 0 749 Candidatus Baumannia cicadellinicola species 1 749 0 186490 genus 1 271 0 1524249 species 1 Pseudohongiella spirulinae 0 1249552 271 1 167 1608298 0 5 Thiolapillus 2 genus Thiolapillus brandeum 1 species 162 0 1076588 1432 0 32036 clade 4 Calyptogena okutanii thioautotrophic gill symbiont 1 species 619 410330 0 1541743 0 407 1 genus 2 Candidatus Ruthia 1 1 species Candidatus Ruthia magnifica 0 386487 406 113267 0 406 1 species Bathymodiolus septemdierum thioautotrophic gill symbiont 35 order 18 Thiotrichales 72273 0 1 15344 0 34064 1 11102 family 15 Francisellaceae 15 0 1869285 1 538 2 genus Allofrancisella 1 537 594679 0 Allofrancisella guangzhouensis 1 species 10549 1 262 0 Francisella 84 12 genus Francisella persica 1 species 469 0 954 Francisella halioticida 1 species 2357 0 549298 1341 28110 0 Francisella philomiragia species 1 534 0 573569 Francisella sp. TX077308 1 species 657445 0 876 1 species Francisella noatunensis 678 0 1542390 Francisella sp. CA97-1460 species 1 622488 0 540 1 species Francisella hispaniensis 1 species Francisella tularensis 0 263 1655 573570 0 968 1 species Francisella sp. TX077310 no rank 2 0 2610885 1047 Francisella sp. FSC1006 1 species 577 1547445 0 Francisella sp. MA067296 species 1 470 475375 0 135617 0 1 1044 4 family 6 Thiotrichaceae genus 2 4 Beggiatoa 1021 0 1 509 species 1 Beggiatoa leptomitoformis 0 288004 505 529 40751 0 1 genus 1 species Thioploca ingrica 0 40754 529 0 135616 3180 1 family 15 Piscirickettsiaceae 26 genus 4 37 Cycloclasticus 0 34067 1438 1 501 1329899 0 Cycloclasticus zancles 1 species no rank 2 2621467 0 900 450 728003 0 Cycloclasticus sp. PY97N 1 species 450 0 385025 Cycloclasticus sp. P1 1 species 0 1237 575 1 genus 2 Piscirickettsia 4 species 1 Piscirickettsia salmonis 1238 0 571 1 544 0 40222 Methylophaga 5 genus 3 Methylophaga frappieri 1 species 231 0 754477 0 754476 308 1 species Methylophaga nitratireducenticrescens 1 358 933 0 Thiomicrospira 2 genus 3 186 92245 0 Thiomicrospira aerophila species 1 170 147268 0 Thiomicrospira cyclica species 1 Hydrogenovibrio 1 genus 2 239 1 28884 0 0 39765 238 1 species Hydrogenovibrio crunogenus Xanthomonadales 50 53 order 1 12672 135614 0 69 Xanthomonadaceae 38 family 11519 1 32033 0 2459 1 0 40323 Stenotrophomonas 38 genus 9 267 0 128780 Stenotrophomonas acidaminiphila species 1 1151 0 995085 1 species group 1 species Stenotrophomonas maltophilia 40324 0 1151 Stenotrophomonas nitritireducens species 1 196 0 83617 196198 0 702 4 no rank 1 species Stenotrophomonas sp. LM091 1904944 0 97 1 species Stenotrophomonas sp. WZN-1 0 2005046 168 species 1 Stenotrophomonas sp. MYb57 1827305 0 260 177 1793721 0 Stenotrophomonas sp. KCTC 12332 species 1 216778 0 105 species 1 Stenotrophomonas rhizophila genus 2 1 Luteimonas 0 83614 1 101 0 2006110 100 species 1 Luteimonas sp. 100111 1 5796 338 0 113 Xanthomonas genus 17 56460 0 250 species 1 Xanthomonas vesicatoria 0 29447 130 species 1 Xanthomonas albilineans species 1 Xanthomonas sacchari 0 56458 115 88 442694 0 Xanthomonas perforans species 1 0 56459 78 species 1 Xanthomonas vasicola 356 0 343 Xanthomonas translucens species 1 456327 0 158 1 species Xanthomonas euvesicatoria 137 1985254 0 Xanthomonas phaseoli species 1 1176 339 0 Xanthomonas campestris species 1 1 species Xanthomonas fragariae 48664 0 264 Xanthomonas axonopodis species 1 108 53413 0 0 366650 111 1 species Xanthomonas alfalfae 1 species Xanthomonas oryzae 0 347 1076 species 1 Xanthomonas hortorum 0 56454 141 2 species group 643453 0 1495 240 366648 0 Xanthomonas fuscans 1 species species 1 Xanthomonas citri 0 346 1255 1734 1 68 0 Lysobacter 20 genus 5 1 species Lysobacter antibioticus 0 84531 619 species 1 Lysobacter enzymogenes 0 69 180 648 435897 0 Lysobacter capsici 1 species 0 262324 267 1 species Lysobacter gummosus 1 genus 0 2370 1000 Xylella fastidiosa species 1 1000 2371 0 Pseudoxanthomonas 6 genus 3 360 1 83618 0 0 415229 103 species 1 Pseudoxanthomonas spadix 314722 0 251 species 1 Pseudoxanthomonas suwonensis 1 1103 0 1775411 Rhodanobacteraceae 9 family 14 0 75309 161 1 2 genus Rhodanobacter 7 0 666685 154 1 species Rhodanobacter denitrificans genus 2 Frateuria 4 0 70411 1 134 81475 0 130 species 1 Frateuria aurantia 1 genus 0 2233801 105 2021234 0 105 1 species Xanthomonadales bacterium D13 122 1 242605 0 1 Luteibacter genus 2 1 species Luteibacter rhizovicinus 242606 0 121 1 Dokdonella genus 2 1 178 0 323413 177 0 323415 Dokdonella koreensis 1 species 0 231454 394 1 4 genus 3 Dyella 231455 0 145 1 species Dyella japonica 120 0 1379159 Dyella jiangningensis species 1 species 1 Dyella thiooxydans 0 445710 126 17 Vibrionales 43 order 1 27599 135623 0 family 42 Vibrionaceae 44 0 641 1 27582 657 0 4849 1 genus 4 7 Photobacterium Photobacterium profundum 1 species 396 74109 0 Photobacterium damselae 1 species 4229 0 38293 1295392 0 217 species 1 Photobacterium gaetbulicola 2042066 0 1 1070 2 genus 3 Paraphotobacterium 1067 0 1755811 Paraphotobacterium marinum species 1 1 genus 0 246861 196 Grimontia hollisae species 1 196 673 0 662 0 1 19892 30 genus Vibrio 177 432 0 45658 Vibrio scophthalmi species 1 Vibrio tritonius 1 species 261 1435069 0 Vibrio coralliilyticus species 1 553 0 190893 593 0 55601 Vibrio anguillarum species 1 666 0 385 1 species Vibrio cholerae Vibrio vulnificus 1 species 1153 672 0 species group 1 1891919 0 345 1 species Vibrio tubiashii 29498 0 345 Vibrio tapetis 1 species 421 0 52443 307 687 0 Vibrio gazogenes species 1 0 676 221 1 species Vibrio fluvialis Vibrio furnissii 1 species 233 0 29494 10 species group 0 717610 12632 542 0 2315253 2 species subgroup 376 0 50719 Vibrio diabolicus 1 species 150340 0 166 species 1 Vibrio antiquarius Vibrio parahaemolyticus 1 species 888 0 670 680 0 2873 1 species Vibrio campbellii 454 0 691 Vibrio natriegens species 1 0 669 1571 1 species Vibrio harveyi 1138 696485 0 Vibrio owensii species 1 663 0 912 1 species Vibrio alginolyticus Vibrio jasicida species 1 380 766224 0 190895 0 3874 species 1 Vibrio rotiferianus species 1 Vibrio qinghaiensis 0 2025808 230 1 species Vibrio mimicus 0 674 271 Vibrio tasmaniensis 1 species 370 212663 0 0 28173 374 species 1 Vibrio nigripulchritudo 219 553239 0 Vibrio breoganii 1 species 2 no rank 351 2614977 0 136 2014742 0 Vibrio sp. 2521-89 species 1 215 0 1116375 Vibrio sp. EJY3 species 1 364 1534743 0 Vibrio hyugaensis species 1 1531 1 0 511678 6 Aliivibrio genus 4 0 40269 363 species 1 Aliivibrio salmonicida Aliivibrio fischeri species 1 503 0 668 Aliivibrio wodanis 1 species 659 80852 0 55630 1 0 28216 Betaproteobacteria 67 class 340 Neisseriales 33 order 35 1 3609 0 206351 1499392 0 1068 1 13 family 23 Chromobacteriaceae 1 96 0 168470 2 Laribacter 2 genus species 1 Laribacter hongkongensis 0 168471 94 2 Aquaspirillum 2 genus 101 1 0 187 99 2620219 0 1 no rank 99 0 1938604 Aquaspirillum sp. LM1 1 species 0 90153 595 4 no rank 4 genus 8 Chromobacterium 535 0 1 595 162 0 536 Chromobacterium violaceum 1 species species 1 Chromobacterium vaccinii 1108595 0 240 no rank 1 185 0 2641838 1 species Chromobacterium sp. ATCC 53434 0 2059672 185 0 568394 1 133 genus 2 5 Pseudogulbenkiania 0 2642558 128 1 no rank species 1 Pseudogulbenkiania sp. NH8B 748280 0 128 genus 2 Jeongeupia 6 885864 0 1 120 no rank 1 2619593 0 114 1 species Jeongeupia sp. USM3 1906741 0 114 481 0 2508 1 21 family 14 Neisseriaceae Snodgrassella 1 genus 2 1 264 0 1193515 263 0 1196083 Snodgrassella alvi species 1 no rank 1 414 421605 0 2052837 0 414 species 1 Neisseriaceae bacterium DSM 100970 genus 1 102 0 538 102 0 539 Eikenella corrodens species 1 28 Neisseria 12 genus 1 1269 482 0 species 1 Neisseria zoodegmatis 326523 0 101 Neisseria lactamica species 1 126 486 0 490 0 54 species 1 Neisseria sicca Neisseria elongata 1 species 75 495 0 124 0 485 Neisseria gonorrhoeae species 1 0 488 56 species 1 Neisseria mucosa 76 0 1853278 Neisseria sp. 10023 species 1 Neisseria meningitidis 1 species 321 0 487 0 2623750 154 2 no rank Neisseria sp. KEM232 species 1 84 0 655307 0 1853276 70 1 species Neisseria sp. 10022 species 1 Neisseria weaveri 0 28091 154 genus 1 0 71 142 Simonsiella muelleri 1 species 142 0 72 0 59 303 1 genus 3 Vitreoscilla 3 2627922 0 205 1 no rank 96942 0 205 species 1 Vitreoscilla sp. C1 63 0 95 1 species Vitreoscilla filiformis 20 order Rhodocyclales 22 206389 0 1 1732 12 family Zoogloeaceae 23 0 2008794 1 1221 21 Thauera 6 genus 632 1 0 33057 Thauera chlorobenzoica species 1 112 96773 0 species 1 Thauera humireducens 0 1134435 140 2 no rank 0 2609274 253 species 1 Thauera sp. MZ1T 85643 0 124 Thauera sp. K11 1 species 129 0 2005884 Thauera aromatica species 1 106 59405 0 566 1 0 12960 10 Azoarcus 5 genus 128 418699 0 Azoarcus olearius 1 species 110 0 2067960 Azoarcus sp. SY39 1 species 2 no rank 2629479 0 318 0 198107 179 species 1 Azoarcus sp. CIB 1 species Azoarcus sp. KH32C 748247 0 139 147 0 2008795 family 2 0 73029 1 147 2 genus 4 Dechloromonas 259537 0 143 1 species Dechloromonas aromatica 342 1 75787 0 Rhodocyclaceae 6 5 family 129 551759 0 1 genus Aromatoleum aromaticum species 1 129 0 551760 1 no rank 0 75788 101 0 1898103 101 species 1 Rhodocyclaceae bacterium 0 146937 1 106 2 genus Azospira 2 Azospira oryzae species 1 104 0 146939 1 42514 80840 0 Burkholderiales 337 order 230 1 22455 119060 0 Burkholderiaceae 109 family 84 1 genus 2571159 0 105 Paraburkholderia rhizoxinica species 1 105 412963 0 93217 0 1 2056 genus 10 Pandoraea 27 1 species Pandoraea oxalativorans 573737 0 224 1 species Pandoraea apista 93218 0 124 1 species Pandoraea faecigallinarum 0 656179 116 709 0 93221 Pandoraea pulmonicola 1 species Pandoraea thiooxydans 1 species 118 445709 0 280 93219 0 Pandoraea norimbergensis 1 species 93220 0 226 1 species Pandoraea pnomenusa 100 93222 0 Pandoraea sputorum 1 species 132 656178 0 Pandoraea vervacti 1 species 0 1822464 2606 1 genus 12 Paraburkholderia 37 234 0 148447 Paraburkholderia phymatum species 1 1 species Paraburkholderia sprentiae 0 948107 155 498 261302 0 Paraburkholderia phytofirmans species 1 Paraburkholderia aromaticivorans 1 species 196 2026199 0 species 1 Paraburkholderia fungorum 0 134537 168 Paraburkholderia xenovorans 1 species 241 0 36873 1 species Paraburkholderia terrae 0 311230 152 Paraburkholderia hospita 1 species 182 0 169430 no rank 1 0 2615204 220 Paraburkholderia sp. SOS3 1 species 220 1926494 0 1 species Paraburkholderia caribensis 75105 0 372 1 species Paraburkholderia phenoliruptrix 252970 0 151 genus 9 Cupriavidus 35 106589 0 1 2717 270 0 106590 Cupriavidus necator 1 species 1 species Cupriavidus gilardii 82541 0 159 0 68895 407 1 species Cupriavidus basilensis 698 0 2640874 no rank 2 Cupriavidus sp. USMAHM13 1 species 310 1389192 0 Cupriavidus sp. USMAA2-4 species 1 388 876364 0 179 0 248026 Cupriavidus pinatubonensis species 1 1 species Cupriavidus sp. USMAA1020 367825 0 289 species 1 Cupriavidus metallidurans 119219 0 680 genus 5 Ralstonia 14 0 48736 1 1437 Ralstonia insidiosa 1 species 156 190721 0 species 1 Ralstonia solanacearum 305 0 790 273 329 0 Ralstonia pickettii species 1 204 105219 0 Ralstonia mannitolilytica species 1 1 genus 190 1827195 0 190 758793 0 Burkholderia sp. RPE64 species 1 44013 0 1 608 4 genus Polynucleobacter 8 0 1835254 184 1 species Polynucleobacter duraquae species 1 Polynucleobacter necessarius 576610 0 138 576611 0 278 1 species Polynucleobacter asymbioticus 41 genus 302 Burkholderia 32008 0 12627 1 0 337 399 1 species Burkholderia glumae 390 28095 0 Burkholderia gladioli 1 species 111527 0 4624 7 species group Burkholderia oklahomensis 1 species 411 0 342113 Burkholderia sp. MSMB0266 species 1 241 1637837 0 1 species Burkholderia sp. MSMB0852 0 1637841 294 0 13373 369 species 1 Burkholderia mallei 1637831 0 267 1 species Burkholderia sp. MSMB617WGS 1 species Burkholderia pseudomallei 28450 0 2545 497 0 57975 Burkholderia thailandensis species 1 no rank 11 1701 0 2613784 416344 0 128 species 1 Burkholderia sp. KJ006 0 640512 181 1 species Burkholderia sp. CCGE1003 Burkholderia sp. 2002721687 1 species 139 1468409 0 183 1678678 0 Burkholderia sp. HB1 1 species Burkholderia sp. RPE67 1 species 221 0 758796 Burkholderia sp. Bp5365 species 1 130 0 1740162 species 1 Burkholderia sp. YI23 0 1097668 220 Burkholderia sp. Bp7605 1 species 121 0 1740163 0 1795874 98 1 species Burkholderia sp. PAMC 28687 species 1 Burkholderia sp. PAMC 26561 0 1795043 132 148 0 640510 Burkholderia sp. CCGE1001 1 species 19 species group 0 87882 5029 1 species Burkholderia contaminans 0 488447 169 127 1503054 0 Burkholderia stagnalis 1 species Burkholderia ubonensis species 1 452 0 101571 346 0 87883 Burkholderia multivorans 1 species Burkholderia stabilis species 1 232 0 95485 300 0 60552 Burkholderia vietnamiensis species 1 1 species Burkholderia seminalis 488731 0 133 152500 0 116 1 species Burkholderia dolosa 108 0 488732 Burkholderia diffusa species 1 0 60550 101 species 1 Burkholderia pyrrocinia 292 0 725 1 species Burkholderia cepacia 488729 0 130 species 1 Burkholderia metallica species 1 Burkholderia latens 0 488446 281 1503055 0 108 1 species Burkholderia territorii 1 species [Pseudomonas] mesoacidophila 265293 0 104 Burkholderia lata 1 species 544 482957 0 95486 0 698 1 species Burkholderia cenocepacia Burkholderia ambifaria species 1 232 152480 0 0 1207504 123 1 species Burkholderia pseudomultivorans species 1 Burkholderia plantarii 0 41899 182 1 7705 80864 0 68 Comamonadaceae family 54 genus 9 Acidovorax 29 12916 0 1 1062 1 species Acidovorax ebreus 0 721785 101 no rank 4 473 0 2684926 0 1858609 199 1 species Acidovorax sp. T1 Acidovorax sp. JS42 1 species 89 0 232721 Acidovorax sp. RAC01 species 1 99 0 1842533 species 1 Acidovorax sp. KKS102 358220 0 86 80869 0 141 species 1 Acidovorax citrulli 1 species Acidovorax avenae 80867 0 222 Acidovorax sp. NA3 1 species 96 553814 0 0 2678886 116 1 genus Melaminivora sp. SC2-7 1 species 116 0 2116657 2 genus Verminephrobacter 2 0 364316 274 1 364317 0 272 1 species Verminephrobacter eiseniae 1 genus 238749 0 109 109 1546149 0 Diaphorobacter polyhydroxybutyrativorans species 1 2 genus Melaminivora 2 0 1649468 1 119 no rank 1 117 0 2641902 Melaminivora sp. SC2-9 species 1 117 2109913 0 1 genus 0 174951 260 Ramlibacter tataouinensis species 1 260 94132 0 5 genus 17 Delftia 0 80865 1 829 no rank 2 2613839 0 438 Delftia sp. Cs1-4 1 species 259 0 742013 179 1920191 0 Delftia sp. HK171 species 1 species 1 Delftia tsuruhatensis 0 180282 200 174 80866 0 Delftia acidovorans species 1 Comamonas 5 4 genus 776 1 283 0 285 0 282 species 1 Comamonas testosteroni 192 0 225992 Comamonas kerstersii species 1 0 1082851 297 1 species Comamonas serinivorans 5 Rhodoferax 5 genus 446 1 0 28065 116 0 81479 Rhodoferax antarcticus species 1 101 192843 0 Rhodoferax ferrireducens 1 species species 1 Rhodoferax koreense 1842727 0 124 100 1484693 0 Rhodoferax saidenbachensis species 1 genus 4 1 Hydrogenophaga 47420 0 394 1 118 1763535 0 Hydrogenophaga crassostreae 1 species no rank 2 275 2610897 0 121 0 795665 Hydrogenophaga sp. PBC species 1 Hydrogenophaga sp. RAC07 1 species 154 0 1842537 genus 1 352450 0 94 0 2109915 94 1 species Simplicispira sp. SC1-8 genus 3 2 Polaromonas 52972 0 1 719 504 0 2638319 no rank 1 species 1 Polaromonas sp. JS666 0 296591 504 species 1 Polaromonas naphthalenivorans 216465 0 213 3 Alicycliphilus 2 genus 1 152 201096 0 Alicycliphilus denitrificans 1 species 149 0 179636 3 genus 2 Ottowia 0 219181 217 1 1 no rank 93 0 2645081 93 0 1658672 Ottowia sp. oral taxon 894 1 species 122 0 2109914 Ottowia sp. KADR8-3 1 species genus 1 0 1436289 111 111 0 1436290 Candidatus Symbiobacter mobilis species 1 genus 2 0 665874 188 2 no rank 0 2626134 188 1 species Limnohabitans sp. 103DPR2 1678129 0 89 99 1678128 0 Limnohabitans sp. 63ED37-2 1 species 0 34072 1 1583 genus 5 Variovorax 23 no rank 2 478 663243 0 236 1795631 0 Variovorax sp. PAMC 28711 1 species 2126319 0 242 1 species Variovorax sp. PMC12 0 34073 898 species 1 Variovorax paradoxus Variovorax boronicumulans species 1 184 0 436515 0 2490452 188 genus 2 species 1 Comamonadaceae bacterium B1 0 1458426 92 96 0 1458425 Comamonadaceae bacterium A1 species 1 2 no rank 0 80841 188 109 0 1834205 Burkholderiales bacterium YL45 1 species 79 1469502 0 Burkholderiales bacterium GJ-E10 species 1 0 75682 1 3675 family 28 25 Oxalobacteraceae genus 6 Herbaspirillum 12 963 0 1 985 140 80842 0 Herbaspirillum rubrisubalbicans 1 species species 1 Herbaspirillum frisingense 0 92645 162 310 0 341045 Herbaspirillum hiltneri species 1 no rank 1 134 0 2624150 134 0 2025949 Herbaspirillum sp. meg3 species 1 227 964 0 Herbaspirillum seropedicae species 1 genus 1 63 0 846 species 1 Oxalobacter formigenes 847 0 63 1 641 0 202907 21 Collimonas genus 4 Collimonas arenae species 1 274 279058 0 158899 0 194 1 species Collimonas fungivorans species 1 Collimonas pratensis 279113 0 152 16 Massilia genus 6 1 843 149698 0 166 0 2045208 Massilia sp. B2 1 species 2072590 0 172 1 species Massilia sp. ZMN-3 318 2609279 0 no rank 2 1707785 0 178 species 1 Massilia sp. WG5 Massilia sp. NR 4-1 1 species 140 1678028 0 1 species Massilia putida 1141883 0 171 genus 7 15 Janthinobacterium 0 29580 908 1 2610881 0 573 4 no rank Janthinobacterium sp. 1_2014MBL_MicDiv species 1 155 0 1644131 species 1 Janthinobacterium sp. LM6 0 1938606 148 species 1 Janthinobacterium sp. B9-8 1236179 0 166 375286 0 104 species 1 Janthinobacterium sp. Marseille Janthinobacterium svalbardensis 1 species 194 368607 0 Janthinobacterium agaricidamnosum 1 species 126 55508 0 0 303379 210 1 3 genus Herminiimonas 3 Herminiimonas arsenitoxidans species 1 99 0 1809410 Herminiimonas arsenicoxydans species 1 108 0 204773 no rank 17 1917 224471 0 0 318147 1 217 2 genus Paucibacter 3 214 0 2642959 1 no rank 214 1768242 0 Paucibacter sp. KCTC 42545 species 1 1 165 32012 0 Thiomonas 8 2 genus 1 species Thiomonas intermedia 0 926 157 Rhizobacter 5 2 genus 152 1 212743 0 147 946333 0 Rhizobacter gummiphilus 1 species 1 153 316612 0 5 Methylibium genus 2 148 0 105560 Methylibium petroleiphilum 1 species 2 genus 1 Mitsuaria 65047 0 215 1 no rank 1 214 0 2648776 214 1658665 0 Mitsuaria sp. 7 1 species Roseateles 3 2 genus 1 373 93681 0 1 species Roseateles depolymerans 0 76731 370 0 28067 211 1 2 genus 2 Rubrivivax 0 28068 209 1 species Rubrivivax gelatinosus [Polyangium] brachysporum 1 species 273 413882 0 1 158 0 88 4 Leptothrix genus 2 154 34029 0 Leptothrix cholodnii 1 species 1 6237 0 506 42 Alcaligenaceae 44 family 0 1472344 1 257 genus 2 2 Basilea 255 0 1472345 Basilea psittacipulmonis 1 species 1 200 1100891 0 1 Paenalcaligenes 2 genus 199 643674 0 Paenalcaligenes hominis species 1 1 Castellaniella genus 2 1 99 359336 0 98 0 75697 Castellaniella defragrans species 1 1 1401 222 0 33 Achromobacter genus 6 Achromobacter spanius 1 species 249 217203 0 1 species Achromobacter insolitus 0 217204 154 1 species Achromobacter denitrificans 32002 0 302 Achromobacter xylosoxidans 1 species 532 85698 0 2626865 0 131 no rank 1 0 1758194 131 species 1 Achromobacter sp. AONIH1 3 genus 4 Taylorella 0 29574 787 1 446 0 29575 Taylorella equigenitalis species 1 337 0 84590 Taylorella asinigenitalis 1 species 1921582 0 1 78 genus 2 Orrella 3 0 1851544 75 1 species Orrella dioscoreae 1 Oligella genus 2 1 170 90243 0 Oligella urethralis 1 species 169 0 90245 3 Alcaligenes 2 genus 1 547 0 507 Alcaligenes faecalis species 1 544 0 511 1 2245 0 517 49 Bordetella genus 17 1 species Bordetella holmesii 0 35814 103 species 1 Bordetella parapertussis 519 0 187 1416803 0 101 1 species Bordetella genomosp. 9 0 94624 151 1 species Bordetella petrii 144 0 1416806 Bordetella genomosp. 8 1 species Bordetella pseudohinzii 1 species 89 0 1331258 species 1 Bordetella genomosp. 13 0 463040 136 339 518 0 Bordetella bronchiseptica 1 species 1 species Bordetella hinzii 103855 0 104 1 no rank 0 2630031 109 Bordetella sp. H567 1 species 109 0 1697043 Bordetella trematum species 1 77 123899 0 Bordetella genomosp. 6 1 species 155 463024 0 Bordetella avium species 1 67 521 0 520 0 181 species 1 Bordetella pertussis 125 463014 0 Bordetella flabilis species 1 1 species Bordetella bronchialis 0 463025 128 genus 3 Advenella 3 290425 0 1 273 137 0 302406 Advenella mimigardefordensis 1 species 0 310575 133 species 1 Advenella kashmirensis 2 genus Pusillimonas 1 305976 0 138 1 no rank 1 137 2640016 0 Pusillimonas sp. T7-7 species 1 137 1007105 0 Nitrosomonadales 25 order 40 1 4097 0 32003 0 2008790 1 98 family 3 2 Thiobacillaceae 2 genus 2 Thiobacillus 0 919 96 1 0 36861 94 1 species Thiobacillus denitrificans 0 90627 250 1 4 family 6 Gallionellaceae 1 139 96 0 Gallionella 2 2 genus 0 370405 137 1 species Gallionella capsiferriformans 1 genus 105 314343 0 1 species Sideroxydans lithotrophicus 0 63745 105 family 4 4 Sterolibacteriaceae 2008793 0 219 1 genus 2 Methyloversatilis 3 378210 0 1 99 no rank 1 96 2639971 0 species 1 Methyloversatilis sp. RAC08 1842540 0 96 1054211 0 116 1 genus 748811 0 116 1 species Sulfuritalea hydrogenivorans 12 family 4 Nitrosomonadaceae 0 206379 1 1681 258 1 0 35798 4 Nitrosospira 4 genus Nitrosospira multiformis 1 species 74 0 1231 species 1 Nitrosospira lacus 0 1288494 111 0 35799 69 1 species Nitrosospira briensis 0 914 1419 1 7 genus 16 Nitrosomonas 0 2609265 579 no rank 2 species 1 Nitrosomonas sp. Is79A3 0 261292 259 species 1 Nitrosomonas sp. AL212 0 153948 320 1 species Nitrosomonas communis 44574 0 304 Nitrosomonas europaea species 1 106 0 915 194 0 916 Nitrosomonas eutropha 1 species 220 0 44577 Nitrosomonas ureae 1 species Methylophilaceae 12 family 12 1 1594 0 32011 3 genus 11 Methylovorus 81682 0 189 1 Methylovorus glucosotrophus species 1 90 266009 0 0 2634027 88 no rank 1 Methylovorus sp. MP688 species 1 88 0 887061 404 0 112 1 genus 405 0 112 1 species Methylobacillus flagellatus 0 1679002 1 705 genus 3 Candidatus Methylopumilus 3 Candidatus Methylopumilus planktonicus species 1 525 1581557 0 species 1 Candidatus Methylopumilus turicensis 0 1581680 177 16 0 126 1 genus 126 0 2630143 no rank 1 species 1 Methylophilus sp. TWE2 1662285 0 126 2 Methylotenera genus 3 1 450 0 359407 267 0 1055487 Methylotenera versatilis species 1 Methylotenera mobilis species 1 181 0 359408 4 family 230 2772226 0 935200 0 142 1 2 genus Sulfuricella 1 Sulfuricella denitrificans species 1 141 649841 0 1778653 0 88 1 genus 2 Sulfuriferula 1 no rank 1 2637784 0 87 1 species Sulfuriferula sp. AH1 1985873 0 87 12 no rank 3252 119066 0 327159 0 1 165 2 genus Candidatus Accumulibacter 4 Candidatus Accumulibacter phosphatis 1 species 161 0 327160 1 genus 125 1301080 0 0 1160784 125 species 1 Candidatus Nasuia deltocephalinicola genus 1 0 189384 24 Candidatus Tremblaya princeps species 1 24 0 189385 2 genus Candidatus Profftella 1 1381133 0 502 1 501 0 669502 Candidatus Profftella armatura species 1 6 genus 17 Kinetoplastibacterium 33055 0 2436 1 0 994692 643 1 species Candidatus Kinetoplastibacterium desouzaii 455 994696 0 Candidatus Kinetoplastibacterium oncopeltii 1 species Candidatus Kinetoplastibacterium crithidii 1 species 559 0 33056 1 species Candidatus Kinetoplastibacterium galatii 0 994695 368 Kinetoplastibacterium blastocrithidii species 1 394 233181 0 33809 0 359 2 no rank 248 543913 0 beta proteobacterium CB species 1 Betaproteobacteria bacterium GR16-43 1 species 111 1904640 0 clade 1591 3355035 1783272 0 clade 152 3112218 1798711 0 152 phylum Cyanobacteria 16 0 1117 3112218 1 0 1890424 1 3057444 order 56 49 Synechococcales 1 851 1890438 0 1 Leptolyngbyaceae 6 family 47251 0 850 1 5 genus 7 Leptolyngbya species 1 Leptolyngbya boryana 1184 0 184 3 no rank 659 0 2650499 1 species Leptolyngbya sp. NIES-3755 1752064 0 168 species 1 Leptolyngbya sp. PCC 7376 0 111781 343 148 0 1080068 Leptolyngbya sp. O-77 1 species 0 1890426 1 43460 family 33 15 Synechococcaceae 351 Synechococcus 26 genus 41578 1 1129 0 105 0 32046 Synechococcus elongatus species 1 no rank 23 41020 2626047 0 80 0 1350461 Synechococcus sp. UTEX 2973 species 1 species 1 Synechococcus sp. JA-3-3Ab 0 321327 73 354 0 1173263 Synechococcus sp. PCC 7502 1 species 412 0 316279 Synechococcus sp. CC9902 1 species Synechococcus sp. KORDI-49 1 species 1091 0 585423 species 1 Synechococcus sp. SynAce01 0 1916956 480 1 species Synechococcus sp. PCC 7002 32049 0 113 2899 0 1280380 Synechococcus sp. KORDI-100 1 species 166314 0 9591 species 1 Synechococcus sp. WH 8109 108 0 374981 Synechococcus sp. PCC 7003 species 1 Synechococcus sp. CC9605 species 1 9652 0 110662 1 species Synechococcus sp. PCC 73109 0 374982 131 0 29410 4666 1 species Synechococcus sp. WH 8103 Synechococcus sp. PCC 7117 species 1 110 195498 0 species 1 Synechococcus sp. JA-2-3B'a(2-13) 0 321332 80 352 0 64471 Synechococcus sp. CC9311 species 1 1 species Synechococcus sp. NIES-970 0 1827144 107 species 1 Synechococcus sp. PCC 6312 0 195253 104 Synechococcus sp. PCC 8807 species 1 106 195248 0 Synechococcus sp. KORDI-52 1 species 3554 0 585425 Synechococcus sp. WH 7803 1 species 568 32051 0 1 species Synechococcus sp. WH 8102 84588 0 4721 Synechococcus sp. RCC307 1 species 1668 316278 0 33070 0 102 1 species Synechococcus lividus 1 Thermosynechococcus 2 genus 1 117 146785 0 species 1 Thermosynechococcus elongatus 146786 0 116 genus 1 0 13034 305 305 292566 0 Dactylococcopsis salina species 1 1445 1 0 167375 33 Cyanobium genus 3 species 1 Cyanobium gracile 59930 0 735 1 no rank 677 2627006 0 677 0 1851505 Cyanobium sp. NIES-981 1 species 0 1890429 402 2 family 4 Acaryochloris 2 genus 1 402 155977 0 Acaryochloris marina species 1 398 0 155978 0 1890436 332 2 family 1 332 1152 0 Pseudanabaena 3 2 genus 329 2593292 0 no rank 1 82654 0 329 species 1 Pseudanabaena sp. PCC 7367 2 family 2303730 0 278 Halomicronema 1 genus 2 278 1 170610 0 1209493 0 277 1 species Halomicronema hongdechloris 1 473 0 1890428 Merismopediaceae 1 family 5 4 Synechocystis genus 4 472 1 0 1142 468 2640012 0 no rank 3 121 1148 0 Synechocystis sp. PCC 6803 1 species 121 0 2116702 Synechocystis sp. IPPAS B-1465 species 1 Synechocystis sp. PCC 6714 1 species 226 0 1147 1 3011599 1213 0 14 Prochloraceae 5 family 0 1218 1 3011585 4 genus 126 Prochlorococcus 2300219 1219 0 Prochlorococcus marinus species 1 no rank 2 0 2627481 711240 0 1501269 3907 1 species Prochlorococcus sp. MIT 0801 Prochlorococcus sp. MIT 0604 species 1 707333 0 1501268 0 1301283 37719 44 subclass 1150 0 1 27730 order 20 Oscillatoriales 21 5 family Microcoleaceae 6 0 1892252 24707 1 Trichodesmium 2 genus 2 24411 1 1205 0 1 species Trichodesmium erythraeum 1206 0 24409 1 290 0 44471 1 Microcoleus genus 2 289 0 2642155 1 no rank Microcoleus sp. PCC 7113 1 species 289 0 1173027 0 1892255 451 family 2 451 1 0 241421 Crinalium 3 genus 2 448 241425 0 Crinalium epipsammum 1 species 3 family 1 Coleofasciculaceae 1892251 0 1 91 0 63132 90 1 genus 2 Geitlerinema 2 no rank 1 88 0 2648775 88 1173025 0 Geitlerinema sp. PCC 7407 1 species 8 Oscillatoriaceae family 6 1 2295 1892254 0 3 genus Oscillatoria 10 1158 0 1 865 Oscillatoria nigro-viridis species 1 359 0 482564 0 118323 496 species 1 Oscillatoria acuminata Moorea 4 genus 2 1 1422 1155738 0 1155739 0 1418 1 species Moorea producens 1 165 0 1892249 Cyanothecaceae 7 family 3 genus 2 24 Cyanothece 0 43988 158 1 2649277 0 134 no rank 1 0 395961 134 1 species Cyanothece sp. PCC 7425 9989 1 1118 0 12 Chroococcales order 24 Microcystaceae 8 4 family 1 1914 1890449 0 9 Microcystis 3 genus 1906 1 1125 0 0 2643300 512 1 no rank 1 species Microcystis sp. MC19 0 1967666 512 1385 0 1126 Microcystis aeruginosa species 1 1890452 0 1 672 3 family 4 Cyanobacteriaceae Cyanobacterium 1 2 genus 1 668 0 102234 1 species Cyanobacterium aponinum 0 379064 667 11 Chroococcaceae 7 family 1 3805 1890464 0 1 Gloeocapsa genus 2 394 1 0 102231 393 2623012 0 no rank 1 1173026 0 393 species 1 Gloeocapsa sp. PCC 7428 1902 0 268175 1 genus 1 no rank 1902 0 2648896 0 2005460 1902 species 1 Chondrocystis sp. NIES-4102 1 Geminocystis genus 3 1498 1 669357 0 no rank 2 1497 0 2625037 0 1615909 838 species 1 Geminocystis sp. NIES-3708 1617448 0 659 1 species Geminocystis sp. NIES-3709 0 1890450 1 3586 9 family 3 Aphanothecaceae 0 1453359 1109 genus 1 1109 0 713887 Candidatus Atelocyanobacterium thalassa species 1 263510 0 468 1 genus 2546360 0 468 1 species 1 strain Cyanothece sp. ATCC 51142 0 43989 468 2 genus 634 2546365 0 2546366 0 634 species 2 332 0 41431 Cyanothece sp. PCC 8801 strain 1 302 395962 0 Cyanothece sp. PCC 8802 1 strain 92682 0 306 2 no rank 1 Halothece genus 2 1 306 76023 0 no rank 1 305 2632878 0 Halothece sp. PCC 7418 1 species 305 0 65093 0 28070 1066 2 genus 1 species 2546359 0 524 Cyanothece sp. PCC 7822 1 strain 524 497965 0 species 1 0 2546356 542 542 65393 0 Cyanothece sp. PCC 7424 1 strain 1983111 0 411 no rank 1 411 718217 0 cyanobacterium endosymbiont of Epithemia turgida species 1 Gloeobacteria 2 class 5 1 243 307596 0 order 4 Gloeobacterales 1 307595 0 1 241 family 3 1 Gloeobacteraceae 1890422 0 1 240 genus 2 239 0 33071 110 0 33072 Gloeobacter violaceus 1 species species 1 Gloeobacter kilaueensis 1416614 0 129 2076 1 0 52604 4 Pleurocapsales 7 order 1890500 0 1 246 family 2 4 Hyellaceae genus 1 44474 0 242 242 54308 0 Pleurocapsa minor species 1 Dermocarpellaceae 3 4 family 1 1826 1890498 0 1 1823 0 102115 Stanieria 5 3 genus 1001 0 2642663 1 no rank 1001 1807358 0 Stanieria sp. NIES-3757 species 1 Stanieria cyanosphaera 1 species 817 102116 0 690 1 0 1890505 Chroococcidiopsidales 1 order 4 1890528 0 1 689 family 3 Chroococcidiopsidaceae 1 Chroococcidiopsis 2 2 genus 1 688 0 54298 1 species Chroococcidiopsis thermalis 54299 0 686 order 34 28 Nostocales 0 1161 1 13619 1 1101 1185 0 Rivulariaceae 17 3 family 2 genus Rivularia 1 0 373984 1084 1 1083 2676603 0 1 no rank 373994 0 1083 1 species Rivularia sp. PCC 7116 1 1067 0 1892263 Hapalosiphonaceae 2 3 family 1 1065 1190 0 Fischerella 1 2 genus 0 494603 1064 no rank 1 1064 0 1752063 Fischerella sp. NIES-3754 species 1 no rank 1 0 1219117 453 species 1 Nostocales cyanobacterium HT-58-2 1940762 0 453 family 8 0 2661849 3833 genus 8 26 Calothrix 1186 0 1 3833 611 32054 0 Calothrix parietina 1 species 6 no rank 0 2619626 3196 Calothrix sp. NIES-4101 1 species 602 0 2005461 2005462 0 498 species 1 Calothrix sp. NIES-3974 399 0 1337936 Calothrix sp. 336/3 species 1 Calothrix sp. NIES-2098 1 species 522 1954171 0 357 0 99598 Calothrix sp. PCC 7507 1 species 0 2005469 818 species 1 Calothrix sp. NIES-4071 7137 1 0 1162 16 Nostocaceae 18 family genus 4 19 Anabaena 0 1163 1 1735 0 2619674 1096 no rank 2 578 1647413 0 Anabaena sp. WA102 species 1 518 0 46234 Anabaena sp. 90 1 species 1 species Anabaena cylindrica 0 1165 620 0 264688 932 1 3 genus 5 Trichormus Trichormus variabilis 1 species 409 0 264691 1164 0 518 1 species Trichormus azollae 4454 1 1177 0 36 Nostoc 10 genus 3370 2593658 0 7 no rank Nostoc sp. NIES-3756 species 1 516 0 1751286 418 1618022 0 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1 species 428 0 1869241 Nostoc sp. CENA543 1 species species 1 Nostoc sp. PCC 7120 0 103690 408 species 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 0 499 0 28072 561 1 species Nostoc sp. PCC 7524 540 317936 0 Nostoc sp. PCC 7107 1 species 0 1306274 644 species 1 Nostoc flagelliforme Nostoc punctiforme species 1 404 0 272131 1 phylum 101 0 67819 class 1 101 0 1663419 order 1 101 0 1663425 101 0 1663426 1 family 0 1005038 101 1 genus Fimbriimonas ginsengisoli 1 species 101 1005039 0 1 152621 1239 0 Firmicutes 45 663 phylum 1 no rank 84086 0 412 243899 0 412 1 species endosymbiont 'TC1' of Trimyema compressum 26 class 3 Negativicutes 0 909932 1 2132 3 order 0 1843488 127 family 3 1 Acidaminococcaceae 909930 0 1 127 genus 2 126 0 904 905 0 81 species 1 Acidaminococcus fermentans 45 0 187327 Acidaminococcus intestini 1 species 1 1329 0 909929 Selenomonadales 7 order 14 family 9 Selenomonadaceae 6 1843491 0 1 619 13 Selenomonas genus 6 1 305 0 970 69823 0 67 species 1 Selenomonas sputigena 64 0 971 Selenomonas ruminantium species 1 3 no rank 161 0 2637378 0 1884263 45 1 species Selenomonas sp. oral taxon 920 Selenomonas sp. oral taxon 478 1 species 59 0 712538 species 1 Selenomonas sp. oral taxon 136 0 713030 57 1 308 158846 0 1 Megamonas genus 2 Megamonas hypermegale 1 species 307 158847 0 0 1843490 1 703 family 4 Sporomusaceae 1 3 genus Pelosinus 2 0 365348 702 1 species 1 Pelosinus fermentans 365349 0 337 2629460 0 363 no rank 1 Pelosinus sp. UFO1 1 species 363 484770 0 0 1843489 673 1 order 8 Veillonellales 4 family 7 6 Veillonellaceae 31977 0 669 1 39948 0 157 genus 1 157 39950 0 Dialister pneumosintes species 1 0 906 110 1 genus 907 0 110 species 1 Megasphaera elsdenii 1 genus 52 0 909928 1 species Negativicoccus massiliensis 1702287 0 52 Veillonella 3 genus 3 1 344 0 29465 79 248315 0 Veillonella rodentium species 1 Veillonella parvula species 1 262 29466 0 Bacilli 68 class 421 1 89885 91061 0 1385 0 1 62411 order 257 Bacillales 155 1 12880 90964 0 Staphylococcaceae 25 41 family 4 genus 4 Macrococcus 0 69965 1 646 Macrococcus caseolyticus 1 species 224 0 69966 2619255 0 231 no rank 1 Macrococcus sp. IME1552 1 species 231 1898474 0 Macrococcus canis species 1 187 0 1855823 2 Auricoccucs 2 genus 1 261 0 2005363 259 1849491 0 Auricoccus indicus species 1 genus 1 53 45669 0 Salinicoccus halodurans species 1 53 407035 0 1 11895 0 1279 82 Staphylococcus genus 33 1290 0 382 1 species Staphylococcus hominis 0 1283 425 species 1 Staphylococcus haemolyticus 1 species Staphylococcus epidermidis 0 1282 669 249 0 1295 Staphylococcus schleiferi 1 species 214473 0 301 species 1 Staphylococcus nepalensis 308354 0 396 1 species Staphylococcus simiae species 1 Staphylococcus saprophyticus 0 29385 312 498 246432 0 Staphylococcus equorum species 1 0 91994 341 1 no rank 1 species Staphylococcus sp. AntiMn-1 1715860 0 341 species 1 Staphylococcus stepanovicii 0 643214 331 1172 1280 0 Staphylococcus aureus 1 species 985762 0 219 1 species Staphylococcus agnetis 316 0 70255 Staphylococcus condimenti 1 species 155085 0 225 1 species Staphylococcus lutrae 29384 0 297 species 1 Staphylococcus kloosii Staphylococcus pasteuri 1 species 786 45972 0 1286 0 257 1 species Staphylococcus simulans 207 0 70258 Staphylococcus piscifermentans 1 species species 1 Staphylococcus pettenkoferi 170573 0 139 985002 0 339 1 species Staphylococcus argenteus 0 1281 291 1 species Staphylococcus carnosus 110 0 1294 Staphylococcus muscae 1 species 0 29382 330 species 1 Staphylococcus cohnii species 1 Staphylococcus sciuri 1296 0 461 29388 0 358 1 species Staphylococcus capitis 0 46127 215 species 1 Staphylococcus felis 0 1288 587 1 species Staphylococcus xylosus species 1 Staphylococcus lugdunensis 0 28035 377 61015 0 420 species 1 Staphylococcus succinus Staphylococcus warneri species 1 353 1292 0 1 species Staphylococcus hyicus 1284 0 211 283734 0 239 species 1 Staphylococcus pseudintermedius 186820 0 1 2140 family 9 2 Listeriaceae 2755 0 266 1 genus 2 3 Brochothrix species 1 Brochothrix thermosphacta 2756 0 263 14 Listeria 6 genus 1 1872 0 1637 282 0 1643 Listeria welshimeri 1 species Listeria innocua 1 species 229 1642 0 species 1 Listeria seeligeri 1640 0 190 1 species Listeria monocytogenes 0 1639 739 418 1638 0 Listeria ivanovii species 1 Bacillaceae 54 115 family 33194 1 0 186817 40 Geobacillus genus 15 1 1360 129337 0 Geobacillus thermodenitrificans species 1 146 33940 0 species group 4 0 1505648 407 Geobacillus thermoleovorans species 1 214 0 33941 62 1462 0 Geobacillus kaustophilus 1 species 1 species Geobacillus thermocatenulatus 0 33938 72 Geobacillus lituanicus 1 species 59 0 169283 no rank 6 561 0 2642459 Geobacillus sp. WCH70 species 1 198 471223 0 1233873 0 29 species 1 Geobacillus sp. GHH01 0 691437 114 1 species Geobacillus sp. C56-T3 Geobacillus sp. Y412MC61 1 species 36 0 544556 581103 0 156 species 1 Geobacillus sp. Y4.1MC1 550542 0 28 1 species Geobacillus sp. Y412MC52 96 1422 0 Geobacillus stearothermophilus 1 species 54 0 129338 Geobacillus subterraneus species 1 1921421 0 56 1 species Geobacillus genomosp. 3 492 1329200 0 genus 2 0 255247 237 species 1 Fictibacillus arsenicus 1 species Fictibacillus phosphorivorans 1221500 0 255 0 1055323 229 genus 1 229 0 33936 Aeribacillus pallidus 1 species Terribacillus 1 2 genus 1 154 0 459532 Terribacillus aidingensis species 1 153 0 586416 2 genus 694 0 2675230 0 665099 222 1 species Bacillus oceanisediminis 0 859143 472 1 species Bacillus kochii genus 2 1 Amphibacillus 29331 0 288 1 287 0 1449 Amphibacillus xylanus species 1 1 21240 1386 0 Bacillus 425 58 genus Bacillus megaterium species 1 1294 1404 0 1 species Bacillus cellulosilyticus 0 1413 374 268 412384 0 Bacillus aryabhattai species 1 no rank 19 0 185979 1998 1 species Bacillus sp. MD-5 2009331 0 66 1 species Bacillus sp. IHB B 7164 1827146 0 260 species 1 Bacillus sp. X1(2014) 1565991 0 264 Bacillus sp. 1s-1 species 1 73 2026248 0 Bacillus sp. WP8 species 1 156 0 756828 0 1941347 52 species 1 Bacillus sp. 275 0 1628753 36 species 1 Bacillus sp. LM 4-2 55 563169 0 Bacillus sp. SJ-10 1 species 1 species Bacillus sp. FJAT-14266 1837130 0 125 1127744 0 64 1 species Bacillus sp. JS 1 species Bacillus sp. OxB-1 98228 0 106 Bacillus sp. SDLI1 species 1 53 1774743 0 0 2049935 42 species 1 Bacillus sp. Lzh-5 1 species Bacillus sp. (in: Bacteria) 1409 0 48 1 species Bacillus sp. YP1 1574141 0 43 22 0 1570330 Bacillus sp. BH072 1 species Bacillus sp. 1NLA3E 1 species 404 0 666686 Bacillus sp. H15-1 1 species 73 1856406 0 0 1446792 56 1 species Bacillus sp. Pc3 Bacillus gibsonii 1 species 68 0 79881 Bacillus pumilus species 1 750 1408 0 0 33932 480 species 1 Bacillus cohnii 632773 0 109 1 species Bacillus beveridgei 653685 0 2286 9 species group 1648923 0 131 1 species Bacillus paralicheniformis 1 species Bacillus licheniformis 0 1402 158 1452 0 251 species 1 Bacillus atrophaeus 3 species subgroup 1938374 0 648 1 species Bacillus velezensis 492670 0 303 Bacillus amyloliquefaciens species 1 290 1390 0 659243 0 55 1 species Bacillus siamensis 0 119858 105 species 1 Bacillus sonorensis 25 0 72361 Bacillus vallismortis species 1 Bacillus subtilis 1 species 968 0 1423 183 1792192 0 1 species group Bacillus altitudinis 1 species 183 293387 0 Bacillus horikoshii 1 species 181 0 79883 10147 86661 0 species group 10 species 1 Bacillus mycoides 1405 0 1179 279 155322 0 Bacillus toyonensis species 1 3 no rank 762 2750818 0 1 species Bacillus sp. FDAARGOS_235 1839798 0 307 1 species Bacillus sp. ABP14 0 1892404 224 231 0 2053832 Bacillus sp. HBCD-sjtu species 1 Bacillus thuringiensis species 1 3382 0 1428 Bacillus cytotoxicus species 1 293 580165 0 species 1 Bacillus cereus 0 1396 3388 658666 0 268 1 species Bacillus bombysepticus species 1 Bacillus anthracis 1392 0 596 species 1 Bacillus safensis 561879 0 358 1 species Bacillus coagulans 1398 0 195 species 1 Bacillus methanolicus 1471 0 324 0 324767 121 species 1 Bacillus infantis 360 0 1547283 Bacillus weihaiensis 1 species 206 1664069 0 Bacillus glycinifermentans 1 species 86664 0 409 1 species Bacillus flexus species 1 Bacillus xiamenensis 1178537 0 154 407 135735 0 Bacillus endophyticus 1 species species 1 Bacillus smithii 0 1479 143 0 2675229 700 2 genus Bacillus muralis 1 species 171 0 264697 Bacillus simplex species 1 529 0 1478 2 Salimicrobium 2 genus 83 1 351195 0 Salimicrobium jeotgali 1 species 81 1230341 0 genus 1 1906945 0 212 1 species Parageobacillus thermoglucosidasius 0 1426 212 84406 0 1 2004 genus 7 8 Virgibacillus Virgibacillus necropolis species 1 390 0 163877 611 0 2620237 2 no rank Virgibacillus sp. 6R species 1 331 1911587 0 280 403957 0 Virgibacillus sp. SK37 1 species 315 0 2017483 Virgibacillus phasianinus species 1 Virgibacillus pantothenticus 1 species 396 1473 0 1482 0 284 1 species Virgibacillus halodenitrificans 5 genus 1439 0 2675234 271 79880 0 Bacillus clausii 1 species 0 79885 324 1 species Bacillus pseudofirmus 0 300825 300 species 1 Bacillus lehensis 0 86665 165 1 species Bacillus halodurans Bacillus krulwichiae 1 species 379 199441 0 182709 0 686 1 genus 1 species Oceanobacillus iheyensis 0 182710 686 1 1183 0 150247 Anoxybacillus 13 genus 6 Anoxybacillus gonensis 1 species 198 0 198467 2 no rank 2639704 0 407 Anoxybacillus sp. B2M1 species 1 202 0 1490052 0 1490057 205 species 1 Anoxybacillus sp. B7M1 Anoxybacillus amylolyticus 1 species 227 294699 0 species 1 Anoxybacillus flavithermus 33934 0 338 genus 2 400 45667 0 1 species Halobacillus halophilus 1570 0 175 225 0 402384 Halobacillus mangrovi species 1 5 genus Lysinibacillus 15 400634 0 1 1824 no rank 1 2636778 0 321 1 species Lysinibacillus sp. YS11 0 2072025 321 877 1421 0 Lysinibacillus sphaericus species 1 0 28031 294 1 species Lysinibacillus fusiformis 0 1145276 317 1 species Lysinibacillus varians genus 1 152 175304 0 0 1472767 152 1 species Lentibacillus amyloliquefaciens Paenibacillaceae 14 46 family 1 8247 0 186822 Brevibacillus 4 4 genus 764 1 0 55080 142 54913 0 Brevibacillus formosus 1 species 0 1465 415 species 1 Brevibacillus laterosporus 1 species Brevibacillus brevis 0 1393 203 1 75 76632 0 Thermobacillus 3 genus 2 Thermobacillus composti 1 species 72 377615 0 3 no rank 85151 0 219 6 Aneurinibacillus 3 genus 219 1 0 55079 110 0 1500254 Aneurinibacillus soli 1 species no rank 1 0 2642329 103 1450761 0 103 1 species Aneurinibacillus sp. XH2 36 genus 47 Paenibacillus 0 44249 1 7175 Paenibacillus borealis 1 species 120 0 160799 149 528191 0 Paenibacillus xylanexedens 1 species 473 0 414771 Paenibacillus donghaensis species 1 44251 0 262 species 1 Paenibacillus durus Paenibacillus graminis 1 species 178 189425 0 species 1 Paenibacillus naphthalenovorans 0 162209 81 129 172713 0 Paenibacillus kribbensis 1 species species group 1 2044880 0 136 1 species Paenibacillus riograndensis 0 483937 136 Paenibacillus mucilaginosus species 1 198 61624 0 no rank 13 185978 0 2535 species 1 Paenibacillus sp. FSL R5-0912 0 1536771 110 1 species Paenibacillus sp. FSL H7-0357 1536774 0 141 168 0 1870819 Paenibacillus sp. BIHB4019 1 species 481743 0 91 species 1 Paenibacillus sp. Y412MC10 1 species Paenibacillus sp. FSL R5-0345 0 1536770 378 species 1 Paenibacillus sp. 32O-W 0 1695218 84 1566358 0 650 species 1 Paenibacillus sp. IHBB 10380 Paenibacillus sp. FSL R7-0331 species 1 99 1536773 0 0 1536769 256 species 1 Paenibacillus sp. FSL P4-0081 species 1 Paenibacillus sp. FSL H7-0737 0 1536775 203 145 2069255 0 Paenibacillus sp. lzh-N1 1 species 1 species Paenibacillus sp. FSL R7-0273 0 1536772 114 Paenibacillus sp. JDR-2 1 species 96 0 324057 1 species Paenibacillus swuensis 0 1178515 115 149 0 59893 Paenibacillus peoriae species 1 1406 0 1153 species 1 Paenibacillus polymyxa 1 species Paenibacillus crassostreae 0 1763538 222 species 1 Paenibacillus beijingensis 1126833 0 97 97 1462996 0 Paenibacillus yonginensis 1 species 1616788 0 224 1 species Paenibacillus bovis 0 365617 90 species 1 Paenibacillus sabinae Paenibacillus odorifer 1 species 230 0 189426 Paenibacillus terrae 1 species 112 0 159743 Paenibacillus ihbetae 1 species 97 0 1870820 Paenibacillus larvae species 1 207 0 1464 169760 0 74 species 1 Paenibacillus stellifer 186818 0 1 4406 25 family Planococcaceae 13 269 1 0 1649 Kurthia 4 2 genus no rank 1 0 2644826 265 265 0 1750719 Kurthia sp. 11kri321 species 1 Solibacillus 7 genus 3 1 599 648800 0 289 2637870 0 no rank 1 1 species Solibacillus sp. R5-41 0 2048654 289 1 species Solibacillus silvestris 0 76853 303 12 genus 22 Planococcus 1372 0 1 1973 1374 0 200 species 1 Planococcus kocurii 131 161360 0 Planococcus antarcticus 1 species 0 1038856 57 species 1 Planococcus plakortidis 254 0 1215089 Planococcus halocryophilus 1 species Planococcus donghaensis 1 species 223 414778 0 1 species Planococcus sp. L10.15 0 1302659 276 1 species Planococcus rifietoensis 0 200991 86 Planococcus faecalis 1 species 196 1598147 0 Planococcus maritimus 1 species 193 192421 0 335 0 2662419 2 no rank species 1 Planococcus sp. PAMC 21323 1526927 0 234 1 species Planococcus sp. MB-3u-03 0 2058136 101 genus 1 199 648802 0 199 241244 0 Rummeliibacillus stabekisii species 1 0 1569 1 1150 5 genus 7 Sporosarcina 1476 0 318 1 species Sporosarcina psychrophila 240 0 2647733 2 no rank 0 1930764 121 species 1 Sporosarcina sp. P33 1 species Sporosarcina sp. P37 0 1930546 119 585 0 1571 Sporosarcina ureae 1 species 203 157226 0 genus 1 203 0 1508404 Jeotgalibacillus malaysiensis species 1 510 1 0 186823 2 Alicyclobacillaceae family 9 genus 3 Tumebacillus 3 432330 0 1 200 Tumebacillus algifaecis 1 species 69 0 1214604 128 1903704 0 Tumebacillus avium species 1 1129704 0 1 207 genus 3 Kyrpidia 1 2055160 0 107 species 1 Kyrpidia sp. EA-1 Kyrpidia tusciae species 1 99 33943 0 Alicyclobacillus 3 genus 2 1 101 29330 0 1 species Alicyclobacillus acidocaldarius 405212 0 98 186824 0 66 family 2 genus 2 1 Novibacillus 0 1677050 1 66 65 1471761 0 Novibacillus thermophilus 1 species 93 0 186821 family 1 no rank 1 0 663587 93 0 85683 93 species 1 [Bacillus] selenitireducens 720 0 539002 no rank 8 1 no rank 251 539738 0 1378 0 251 genus 1 1 no rank 2624949 0 251 1 species Gemella sp. oral taxon 928 0 1785995 251 no rank 7 469 539742 0 Exiguobacterium 1 genus 7 1 469 0 33986 Exiguobacterium antarcticum 1 species 65 0 132920 1 species Exiguobacterium sibiricum 0 332410 76 327 2644629 0 4 no rank Exiguobacterium sp. AT1b species 1 47 0 360911 species 1 Exiguobacterium sp. ZWU0009 1224749 0 109 0 1849031 100 species 1 Exiguobacterium sp. U13-1 71 0 1399115 Exiguobacterium sp. MH3 1 species 1 27406 186826 0 70 Lactobacillales 163 order family 17 5 Leuconostocaceae 0 81850 1 2047 11 Leuconostoc 9 genus 1 1332 0 1243 1 species Leuconostoc garlicum 0 255248 75 278 1244 0 Leuconostoc gelidum species 1 Leuconostoc lactis species 1 54 1246 0 Leuconostoc mesenteroides species 1 348 1245 0 126 0 2685106 1 no rank 0 979982 126 species 1 Leuconostoc sp. C2 species 1 Leuconostoc carnosum 0 1252 182 Leuconostoc kimchii species 1 137 136609 0 33964 0 121 1 species Leuconostoc citreum 46254 0 129 genus 1 1247 0 129 1 species Oenococcus oeni 6 genus Weissella 1 0 46255 581 1 Weissella ceti species 1 101 759620 0 1249 0 125 1 species Weissella paramesenteroides Weissella koreensis 1 species 132 0 165096 Weissella jogaejeotgali 1 species 134 0 1631871 137591 0 88 1 species Weissella cibaria 267 263855 0 no rank 1 267 1993866 0 Lactobacillales bacterium 1 species 1 684 0 186827 Aerococcaceae 1 8 family 1375 0 1 683 genus 7 Aerococcus 4 0 87541 140 species 1 Aerococcus christensenii Aerococcus urinaehominis 1 species 77 128944 0 1 species Aerococcus urinaeequi 51665 0 157 61 0 119206 Aerococcus sanguinicola species 1 1 species Aerococcus viridans 0 1377 118 Aerococcus urinae 1 species 126 0 1376 0 186828 2037 1 10 family 5 Carnobacteriaceae 5 genus Carnobacterium 8 0 2747 1269 1 no rank 2 0 257487 430 Carnobacterium sp. CP1 1 species 165 0 1564681 species 1 Carnobacterium sp. 17-4 208596 0 265 277 147709 0 Carnobacterium inhibens species 1 0 2751 554 species 1 Carnobacterium maltaromaticum 1 Jeotgalibaca 3 genus 357 1 1470540 0 species 1 Jeotgalibaca dankookensis 0 708126 169 no rank 1 187 2621505 0 187 1903686 0 Jeotgalibaca sp. PTS2502 1 species 191769 0 406 1 genus 406 0 2632303 no rank 1 1 species Marinilactibacillus sp. 15R 0 1911586 406 15 Lactobacillaceae family 58 9822 1 0 33958 4 genus 0 2767887 877 99 1601 0 Lactobacillus agilis species 1 Lactobacillus ruminis 1 species 67 0 1623 1 species Lactobacillus acidipiscis 89059 0 129 1 species Lactobacillus salivarius 1624 0 582 600 2742598 0 genus 3 species 1 Lactobacillus fermentum 1613 0 74 Lactobacillus reuteri species 1 436 1598 0 90 0 97478 Lactobacillus mucosae species 1 0 2767890 162 1 genus Lactobacillus hokkaidonensis 1 species 162 0 1193095 2 genus 292 0 2767889 167 375175 0 Lactobacillus backii species 1 Lactobacillus coryniformis 1 species 125 1610 0 genus 6 2767879 0 1252 223 392416 0 Lactobacillus crustorum species 1 1074467 0 167 1 species Lactobacillus heilongjiangensis 1 species Lactobacillus ginsenosidimutans 0 1007676 238 216 0 1602 Lactobacillus alimentarius species 1 Lactobacillus farciminis species 1 168 1612 0 Lactobacillus allii species 1 240 0 1847728 Pediococcus 6 6 genus 845 1 0 1253 Pediococcus pentosaceus species 1 244 0 1255 Pediococcus claussenii 1 species 257 0 187452 114 114090 0 Pediococcus inopinatus species 1 1 species Pediococcus damnosus 51663 0 128 species group 1 1670797 0 96 Pediococcus acidilactici species 1 96 1254 0 genus 3 2767842 0 666 Lactobacillus pentosus species 1 97 1589 0 1 species Lactobacillus paraplantarum 60520 0 82 species 1 Lactobacillus plantarum 1590 0 487 70 0 2767876 1 genus 1 species Lactobacillus amylophilus 0 1603 70 495 0 2759736 genus 3 1 species Lactobacillus paracasei 1597 0 146 47715 0 168 species 1 Lactobacillus rhamnosus 181 0 1582 Lactobacillus casei species 1 2 genus 326 2767885 0 species 1 Lactobacillus curvatus 0 28038 117 species 1 Lactobacillus sakei 0 1599 209 296 2767893 0 genus 3 1581 0 96 species 1 Lactobacillus buchneri 152331 0 80 1 species Lactobacillus parabuchneri 0 1138822 120 species 1 Lactobacillus curieae 2767892 0 136 genus 1 136 240427 0 Lactobacillus paracollinoides species 1 1 3119 1578 0 Lactobacillus 73 16 genus 267818 0 151 species 1 Lactobacillus kefiranofaciens 1579 0 160 1 species Lactobacillus acidophilus 154 0 1600 Lactobacillus acetotolerans species 1 226 0 1584 Lactobacillus delbrueckii species 1 Lactobacillus gasseri 1 species 400 0 1596 Lactobacillus johnsonii species 1 460 33959 0 species 1 Lactobacillus amylolyticus 83683 0 117 1 species Lactobacillus amylovorus 1604 0 206 0 52242 117 species 1 Lactobacillus gallinarum 4 no rank 0 2620435 521 0 1545702 200 1 species Lactobacillus sp. wkB8 99 2099789 0 Lactobacillus sp. CBA3606 species 1 0 2099788 152 species 1 Lactobacillus sp. CBA3605 70 2108362 0 Lactobacillus sp. D1501 1 species Lactobacillus jensenii 1 species 223 0 109790 Lactobacillus helveticus 1 species 311 0 1587 0 2767881 389 2 genus 241 0 53444 Lactobacillus lindneri species 1 Lactobacillus sanfranciscensis 1 species 148 1625 0 genus 3 175 0 2767886 32 637971 0 Lactobacillus koreensis 1 species 0 1580 110 1 species Lactobacillus brevis 33 267363 0 Lactobacillus zymae 1 species 2767877 0 107 1 genus 148814 0 107 1 species Lactobacillus kunkeei family 49 Streptococcaceae 15 1300 0 8979 1 Streptococcus 80 43 genus 7162 1 1301 0 Streptococcus equinus 1 species 87 1335 0 588 0 2608887 7 no rank species 1 Streptococcus sp. I-G2 1156431 0 66 Streptococcus sp. I-P16 species 1 54 1156433 0 Streptococcus sp. NPS 308 species 1 60 1902136 0 Streptococcus sp. FDAARGOS_192 species 1 89 0 1839799 Streptococcus sp. 'group B' 1 species 168 0 1319 1759399 0 75 1 species Streptococcus sp. A12 Streptococcus sp. oral taxon 431 species 1 76 712633 0 species 1 Streptococcus marmotae 1825069 0 87 species 1 Streptococcus pneumoniae 1313 0 338 1326 0 78 species 1 Streptococcus acidominimus 1 species Streptococcus lutetiensis 0 150055 146 1 species Streptococcus halotolerans 1814128 0 85 1 species Streptococcus merionis 0 400065 107 671232 0 619 3 species group 279 1328 0 Streptococcus anginosus species 1 Streptococcus constellatus 1 species 121 0 76860 Streptococcus intermedius 1 species 219 1338 0 species 1 Streptococcus pantholopis 0 1811193 87 74 0 1888195 Streptococcus himalayensis 1 species 1348 0 263 species 1 Streptococcus parauberis 82348 0 92 1 species Streptococcus pluranimalium 224 102684 0 Streptococcus infantarius 1 species 1 species Streptococcus macedonicus 0 59310 116 55 1305 0 Streptococcus sanguinis 1 species 254 315405 0 Streptococcus gallolyticus 1 species Streptococcus iniae species 1 211 0 1346 Streptococcus thermophilus 1 species 220 1308 0 1 species Streptococcus suis 0 1307 464 203 0 1303 Streptococcus oralis 1 species 2 species group 356 119603 0 1336 0 217 species 1 Streptococcus equi 1 species Streptococcus dysgalactiae 1334 0 139 Streptococcus pyogenes species 1 376 1314 0 Streptococcus pasteurianus 1 species 120 0 197614 257758 0 87 species 1 Streptococcus pseudopneumoniae species 1 Streptococcus cristatus 45634 0 75 species 1 Streptococcus parasanguinis 1318 0 97 species 1 Streptococcus mitis 28037 0 238 species 1 Streptococcus uberis 1349 0 165 1302 0 267 1 species Streptococcus gordonii 1304 0 295 species 1 Streptococcus salivarius species 1 Streptococcus agalactiae 0 1311 348 260 1309 0 Streptococcus mutans 1 species 5 genus Lactococcus 2 1357 0 1802 1 Lactococcus raffinolactis 1 species 94 1366 0 0 1363 251 species 1 Lactococcus garvieae 1 species Lactococcus piscium 1364 0 202 1253 0 1358 Lactococcus lactis species 1 1 3500 0 81852 Enterococcaceae 7 19 family 3 genus 1 Vagococcus 2737 0 1 481 0 633807 225 1 species Vagococcus penaei Vagococcus teuberi species 1 255 0 519472 1 genus 0 33969 352 352 33970 0 Melissococcus plutonius 1 species 316 1 51668 0 Tetragenococcus 1 genus 2 1 species Tetragenococcus halophilus 0 51669 315 1350 0 2344 1 genus 12 Enterococcus 22 Enterococcus wangshanyuanii species 1 201 0 2005703 species 1 Enterococcus casseliflavus 0 37734 127 Enterococcus durans species 1 225 53345 0 Enterococcus thailandicus species 1 230 417368 0 1 species Enterococcus mundtii 0 53346 198 0 1352 402 1 species Enterococcus faecium 3 no rank 335 0 2608891 105 2060306 0 Enterococcus sp. FDAARGOS_163 1 species 1 species Enterococcus sp. FDAARGOS_375 0 2060307 128 2057791 0 102 species 1 Enterococcus sp. CR-Ec1 species 1 Enterococcus hirae 0 1354 205 399 1351 0 Enterococcus faecalis 1 species class 188 55 Clostridia 0 186801 57006 1 2 order 0 2770089 300 240 0 2770092 1 family genus 1 0 499228 240 Tepidanaerobacter acetatoxydans 1 species 240 499229 0 60 2770093 0 1 family 291988 0 60 1 genus 1 species Thermosediminibacter oceani 291990 0 60 68295 0 1 6993 order 33 Thermoanaerobacterales 7 0 227387 1 394 family 3 Thermodesulfobiaceae 2 227388 0 1 392 2 genus 1 Thermodesulfobium 0 184064 391 species 1 Thermodesulfobium narugense 543372 0 1 87 family 2 1 Thermoanaerobacterales Family IV. Incertae Sedis 252965 0 86 genus 1 252966 0 86 species 1 Mahella australiensis 5 Thermoanaerobacteraceae family 15 1 3310 0 186814 129 Thermoanaerobacter genus 9 2719 1 0 1754 0 108150 352 1 species Thermoanaerobacter italicus Thermoanaerobacter brockii species 1 307 29323 0 583357 0 337 1 species Thermoanaerobacter mathranii Thermoanaerobacter pseudethanolicus 1 species 307 0 496866 336 0 46354 Thermoanaerobacter wiegelii species 1 no rank 2 2636821 0 684 322 399726 0 Thermoanaerobacter sp. X514 species 1 1 species Thermoanaerobacter sp. X513 573062 0 362 267 0 2325 Thermoanaerobacter kivui species 1 265 0 249529 1 genus 265 0 911092 Caldanaerobacter subterraneus species 1 165 0 129957 1 genus Carboxydothermus hydrogenoformans 1 species 165 129958 0 no rank 2 91 42857 0 1 genus 42837 0 30 Ammonifex degensii 1 species 30 42838 0 1 genus 0 44260 61 Moorella thermoacetica species 1 61 1525 0 65 140458 0 1 genus 65 85874 0 Thermacetogenium phaeum 1 species family 12 1 Thermoanaerobacterales Family III. Incertae Sedis 543371 0 1 3195 genus 2 28895 0 825 0 29329 319 1 species Thermoanaerobacterium xylanolyticum 0 1517 506 species 1 Thermoanaerobacterium thermosaccharolyticum 9 genus 42 Caldicellulosiruptor 44000 0 1 2369 307 413888 0 Caldicellulosiruptor hydrothermalis species 1 1 species Caldicellulosiruptor obsidiansis 717609 0 303 52765 0 234 species 1 Caldicellulosiruptor kristjanssonii 31899 0 283 species 1 Caldicellulosiruptor bescii Caldicellulosiruptor owensensis species 1 301 55205 0 species 1 Caldicellulosiruptor saccharolyticus 44001 0 309 0 52766 257 species 1 Caldicellulosiruptor lactoaceticus Caldicellulosiruptor kronotskyensis species 1 333 0 413889 138 order 100 Clostridiales 186802 0 46987 1 0 216572 72 1 family genus 1 72 0 459786 Oscillibacter valericigenes 1 species 72 351091 0 31979 0 33148 1 39 family Clostridiaceae 29 159 Clostridium 30 genus 1 30970 1485 0 1 species Clostridium aceticum 84022 0 421 1490 1502 0 Clostridium perfringens 1 species 0 394958 808 1 species Clostridium taeniosporum Clostridium tetani 1 species 831 1513 0 1488 0 730 species 1 Clostridium acetobutylicum 337 0 2614128 no rank 2 Clostridium sp. BNL1100 1 species 290 755731 0 47 1042156 0 Clostridium sp. SY8519 1 species 715 0 46867 Clostridium chauvoei species 1 782 1493 0 Clostridium cellulovorans 1 species 618 84023 0 Clostridium autoethanogenum 1 species 1491 0 6650 species 1 Clostridium botulinum species 1 Clostridium baratii 0 1561 1287 1039 1548 0 Clostridium scatologenes 1 species Clostridium novyi 1 species 580 1542 0 1534 0 924 species 1 Clostridium kluyveri 36745 0 1306 species 1 Clostridium saccharoperbutylacetonicum 1625 1501 0 Clostridium pasteurianum 1 species 1 species Clostridium argentinense 29341 0 815 921 217159 0 Clostridium carboxidivorans 1 species Clostridium saccharobutylicum 1 species 1399 0 169679 1494 0 619 1 species Clostridium cochlearium species 1 Clostridium formicaceticum 1497 0 431 646 1538 0 Clostridium ljungdahlii 1 species 1216932 0 867 1 species Clostridium bornimense 1520 0 1666 1 species Clostridium beijerinckii species 1 Clostridium butyricum 1492 0 1254 species 1 Clostridium estertheticum 0 238834 763 1 species Clostridium tyrobutyricum 1519 0 485 1509 0 802 1 species Clostridium sporogenes Alkaliphilus 1 3 genus 1 702 0 114627 Alkaliphilus oremlandii 1 species 251 461876 0 450 0 208226 Alkaliphilus metalliredigens 1 species 16 Candidatus Arthromitus genus 4 1 1105 49082 0 3 no rank 2638829 0 1089 1 species Candidatus Arthromitus sp. SFB-mouse 49118 0 333 404 1041504 0 Candidatus Arthromitus sp. SFB-rat-Yit species 1 Candidatus Arthromitus sp. SFB-mouse-NL 1 species 352 0 1508644 genus 1 342 390805 0 1 species Geosporobacter ferrireducens 0 1424294 342 11 family 2304686 0 1671 167 0 2304693 genus 1 167 0 84032 [Clostridium] thermosuccinogenes species 1 2305130 0 46 no rank 1 1 species Ruminiclostridium sp. KB18 1834198 0 46 1 Ruminiclostridium 2 genus 1 229 0 1508657 [Clostridium] cellulolyticum species 1 228 1521 0 genus 3 833 0 2304692 0 1515 218 species 1 Ruminiclostridium thermocellum 1 species Herbivorax saccincola 0 1677857 295 species 1 [Clostridium] clariflavum 288965 0 320 0 1637257 61 1 genus 884684 0 61 species 1 Mageeibacillus indolicus 0 236752 222 1 2 genus Fastidiosipila 5 217 0 236753 Fastidiosipila sanguinis 1 species 1 genus 113 2304691 0 species 1 [Clostridium] stercorarium 0 1510 113 0 68298 1 178 4 family Syntrophomonadaceae 1 0 129001 72 1 genus 72 86170 0 Syntrophothermus lipocalidus species 1 2 genus 1 Syntrophomonas 0 862 105 1 Syntrophomonas wolfei 1 species 104 863 0 Peptococcaceae 6 family 25 2681 1 0 186807 genus 4 Dehalobacter 10 56112 0 1 280 2635733 0 181 2 no rank 0 1131462 94 1 species Dehalobacter sp. CF 1147129 0 87 1 species Dehalobacter sp. DCA 0 55583 89 1 species Dehalobacter restrictus 2282740 0 160 1 genus 0 102134 160 species 1 Desulfotomaculum gibsoniae 0 278993 99 1 genus 0 863643 99 species 1 Thermincola potens 590 1 0 79206 Desulfosporosinus 1 4 genus 885581 0 202 species 1 Desulfosporosinus acidiphilus 1 species Desulfosporosinus meridiei 79209 0 199 Desulfosporosinus orientis species 1 188 0 1563 1 genus 0 51514 151 species 1 Dehalobacterium formicoaceticum 51515 0 151 0 51196 102 genus 1 0 51197 102 1 species Syntrophobotulus glycolicus Desulfotomaculum 6 5 genus 521 1 1562 0 Desulfotomaculum reducens 1 species 205 59610 0 1833852 0 104 1 species Desulfotomaculum ferrireducens Desulfotomaculum ruminis species 1 102 1564 0 1 species Desulfotomaculum nigrificans 1565 0 104 581 1 0 36853 2 Desulfitobacterium genus 5 0 142877 155 species 1 Desulfitobacterium metallireducens Desulfitobacterium dichloroeliminans 1 species 150 0 233055 Desulfitobacterium dehalogenans species 1 120 36854 0 1 species Desulfitobacterium hafniense 49338 0 154 53 471826 0 genus 1 Candidatus Desulforudis audaxviator species 1 53 0 471827 genus 1 138 0 2282742 1 species Desulfotomaculum acetoxidans 0 58138 138 Eubacteriaceae 1 5 family 1 556 186806 0 0 33951 1 268 genus 2 2 Acetobacterium 266 33952 0 Acetobacterium woodii species 1 genus 2 Eubacterium 4 0 1730 287 1 283 1736 0 Eubacterium limosum species 1 186803 0 1 4011 22 family Lachnospiraceae 6 Blautia 2 3 genus 1 267 572511 0 0 1322 162 species 1 Blautia hansenii 1 no rank 0 2648079 103 Blautia sp. YL58 1 species 103 1796616 0 genus 1 216 0 1663717 1 species Herbinix luporum 1679721 0 216 genus 3 1 Butyrivibrio 830 0 556 1 species 1 Butyrivibrio hungatei 0 185008 270 285 43305 0 Butyrivibrio proteoclasticus species 1 1 genus 274 28050 0 [Eubacterium] eligens 1 species 274 0 39485 0 2039240 130 1 2 genus 1 Anaerotignum 1 species Anaerotignum propionicum 28446 0 129 399 0 2569097 1 genus [Eubacterium] hallii species 1 399 0 39488 698776 0 867 1 genus Cellulosilyticum lentocellum 1 species 867 0 29360 0 186928 221 2 no rank 0 712991 97 1 species Lachnospiraceae bacterium oral taxon 500 species 1 [Eubacterium] rectale 0 39491 124 1506553 0 543 genus 3 1 species Lachnoclostridium phocaeense 1871021 0 77 species 1 Lachnoclostridium phytofermentans 66219 0 363 no rank 1 0 2608895 103 1 species Lachnoclostridium sp. YL32 0 1834196 103 0 2719313 130 genus 1 [Clostridium] bolteae 1 species 130 208479 0 genus 1 124 0 2719231 [Clostridium] saccharolyticum species 1 124 84030 0 1 genus 217 207244 0 217 0 649756 Anaerostipes hadrus species 1 1 genus 841 0 61 0 301301 61 1 species Roseburia hominis family 1 61 31984 0 61 0 2697 1 genus 1 species Heliobacterium modesticaldum 0 35701 61 family 2 0 543349 112 0 2733 112 1 genus 2 1 Symbiobacterium 111 0 2734 Symbiobacterium thermophilum 1 species 6 Peptostreptococcaceae 9 family 1 3450 0 186804 186831 0 1 519 genus 2 Acetoanaerobium 1 1 species Acetoanaerobium sticklandii 0 1511 518 1 no rank 1411023 0 242 2081703 0 242 species 1 Peptostreptococcaceae bacterium oral taxon 929 1 genus 0 1481960 128 species 1 Peptoclostridium acidaminophilum 1731 0 128 2 genus Paeniclostridium 1 1849828 0 770 1 species 1 Paeniclostridium sordellii 1505 0 769 genus 1 198 0 44259 0 143361 198 1 species Filifactor alocis 1 genus 1870884 0 1587 1587 0 1496 Clostridioides difficile 1 species no rank 7 538999 0 388 family 1 56 539000 0 genus 1 56 0 73918 Thermaerobacter marianensis 1 species 56 73919 0 543314 0 218 3 family genus 2 Mogibacterium 1 0 86331 1 100 0 114527 99 1 species Mogibacterium diversum species 1 [Eubacterium] sulci 0 143393 118 genus 2 Intestinimonas 2 1392389 0 1 49 47 1297617 0 Intestinimonas butyriciproducens species 1 1 genus 65 0 2717089 1 species Mordavella sp. Marseille-P3756 0 2086584 65 2 family 52 0 990719 2 genus Christensenella 1 0 990721 1 52 Christensenella massiliensis 1 species 51 1805714 0 9 family 9 Ruminococcaceae 0 541000 1 507 1 genus 253238 0 54 54 253239 0 Ethanoligenens harbinense 1 species 0 2305133 54 no rank 1 0 1572656 54 1 species Ruminococcaceae bacterium CPB6 1 genus 56 216851 0 Faecalibacterium prausnitzii 1 species 56 853 0 genus 2 0 1263 202 0 1160721 112 species 1 Ruminococcus bicirculans species 1 Ruminococcus albus 0 1264 90 55 0 552397 1 no rank [Clostridium] cellulosi species 1 55 0 29343 genus 2 2 Flavonifractor 946234 0 1 77 75 0 292800 Flavonifractor plautii species 1 order 12 6 Halanaerobiales 0 53433 1 2357 1 1527 0 972 Halanaerobiaceae 4 family 6 3 genus 8 Halanaerobium 2330 0 1270 1 species 1 Halanaerobium hydrogeniformans 656519 0 595 species 1 Halanaerobium praevalens 0 2331 667 0 32636 253 1 genus 2 Halothermothrix 10 Halothermothrix orenii species 1 243 31909 0 53434 0 1 824 family 5 Halobacteroidaceae 3 28186 0 277 1 genus 2 2 Acetohalobium 275 28187 0 Acetohalobium arabaticum 1 species 2 genus 2 Halobacteroides 42417 0 544 1 0 42422 542 species 1 Halobacteroides halobius 1 314 485256 0 Natranaerobiales 3 order 2 1 family 311 485255 0 0 375928 311 1 genus 0 375929 311 1 species Natranaerobius thermophilus no rank 1 47 0 33974 genus 1 47 0 1930845 1 species Ndongobacter massiliensis 0 1871025 47 526524 0 1 728 class 8 1 Erysipelotrichia Erysipelotrichales 2 order 7 1 727 526525 0 4 Erysipelotrichaceae 6 family 1 725 0 128827 genus 1 45 0 1729679 species 1 Faecalibaculum rodentium 0 1702221 45 355 0 1647 2 genus 1 species Erysipelothrix larvae 1514105 0 178 0 1648 177 1 species Erysipelothrix rhusiopathiae 106 544447 0 1 no rank 106 1834207 0 Erysipelotrichaceae bacterium I46 species 1 1 genus 0 191303 215 2638206 0 215 no rank 1 Turicibacter sp. H121 species 1 215 1712675 0 Tissierellia 8 class 15 1 2286 0 1737404 1 2080 1737405 0 8 Tissierellales order 13 521 2042895 0 2 family Gottschalkia 2 2 genus 521 1 1505664 0 Gottschalkia acidurici 1 species 519 0 1556 2 Peptoniphilaceae family 10 1 1551 0 1570339 Parvimonas 1 2 genus 1 438 0 543311 Parvimonas micra 1 species 437 0 33033 genus 2 Peptoniphilus 1 162289 0 1 227 2637196 0 226 no rank 1 0 1912856 226 species 1 Peptoniphilus sp. ING2-D1G 1 384 0 150022 Finegoldia 1 genus 2 383 1260 0 Finegoldia magna 1 species 61 1161127 0 genus 1 species 1 Murdochiella vaginalis 1852373 0 61 0 165779 439 2 genus 33034 0 205 species 1 Anaerococcus prevotii 1 species Anaerococcus mediterraneensis 1870984 0 234 198 1737407 0 1 no rank 1 genus 0 1582879 198 198 0 1852374 Ezakiella massiliensis species 1 1676648 0 80 class 2 1676649 0 80 2 order family 2 0 1676650 80 1 80 0 1676651 Limnochorda 8 2 genus Limnochorda pilosa species 1 72 1555112 0 0 200795 1446 31 phylum 5 class 2 Caldilineae 0 475962 132 1 1 130 0 475963 Caldilineales 1 order 4 1 Caldilineaceae 3 family 129 1 0 475964 1 128 0 233191 Caldilinea 3 2 genus 0 133453 125 1 species Caldilinea aerophila 189775 0 159 class 4 3 subclass 85000 0 120 Sphaerobacterales 2 3 order 120 1 85001 0 0 255728 118 2 suborder 85002 0 1 118 family 2 Sphaerobacteraceae 1 117 0 2056 genus 1 species 1 Sphaerobacter thermophilus 2057 0 117 39 0 189776 1 order family 1 39 189777 0 499 0 39 1 genus 0 500 39 species 1 Thermomicrobium roseum class 8 453 32061 0 order 8 Chloroflexales 4 32064 0 1 453 186 0 1508595 3 suborder 2 Roseiflexaceae family 3 1 186 0 1508635 2 genus 184 0 120961 1 no rank 74 2609473 0 0 357808 74 1 species Roseiflexus sp. RS-1 120962 0 110 1 species Roseiflexus castenholzii suborder 4 1508594 0 263 family 4 263 0 1106 4 genus Chloroflexus 2 1107 0 263 1 144 1 0 1108 72 Chloroflexus aurantiacus species 2 1 strain Chloroflexus sp. Y-400-fl 480224 0 72 Chloroflexus aggregans species 1 117 152260 0 class 5 178 292625 0 292629 0 178 5 order 178 0 292628 5 family 48 1324991 0 no rank 1 48 0 1889813 Anaerolineaceae bacterium oral taxon 439 species 1 genus 2 Anaerolinea 1 233189 0 1 58 Anaerolinea thermophila 1 species 57 0 167964 0 2019482 72 1 2 genus 2 Brevefilum Brevefilum fermentans species 1 70 1986204 0 0 301297 287 1 7 class 2 Dehalococcoidia 111 1 670486 0 1 Dehalogenimonas 3 genus species 1 Dehalogenimonas formicexedens 0 1839801 56 54 0 552810 Dehalogenimonas lykanthroporepellens species 1 order 3 0 1202465 174 1 Dehalococcoidaceae 3 family 174 1 1202464 0 genus 2 0 61434 173 species 1 Dehalococcoides mccartyi 61435 0 144 0 237581 29 no rank 1 Dehalococcoides sp. UCH007 1 species 29 0 1522671 1382928 0 237 class 2 2 order 237 1382929 0 family 2 0 1382930 237 0 1988031 1 237 2 genus Candidatus Promineofilum 2 1 species Candidatus Promineofilum breve 0 1806508 235 1 66113 0 201174 Actinobacteria 4 607 phylum 1 199 84995 0 Rubrobacteria 2 6 class order 5 10 Rubrobacterales 0 84996 197 1 84997 0 1 187 4 family Rubrobacteraceae 1 186 1 42255 0 Rubrobacter 4 genus 3 Rubrobacter radiotolerans species 1 76 42256 0 0 49319 106 species 1 Rubrobacter xylanophilus 1760 0 63015 1 class 561 217 Actinobacteria 1 850 2037 0 1 Actinomycetales 18 order family 17 14 Actinomycetaceae 2049 0 849 1 40 1 1653174 0 Actinotignum 1 genus 2 39 0 59505 Actinotignum schaalii 1 species 9 genus 20 Actinomyces 0 1654 564 1 1 species Actinomyces radicidentis 111015 0 111 species 1 Actinomyces pacaensis 0 1852377 37 228 0 2609248 3 no rank species 1 Actinomyces sp. oral taxon 897 0 2081702 80 Actinomyces sp. oral taxon 414 1 species 64 0 712122 84 0 1851395 Actinomyces sp. Chiba101 1 species 1 species Actinomyces oris 544580 0 75 Actinomyces gaoshouyii species 1 55 0 1960083 1912795 0 38 species 1 Actinomyces sp. VUL4_3 1 genus 2529408 0 29 29 0 52773 Actinomyces meyeri 1 species genus 1 28263 0 47 0 28264 47 species 1 Arcanobacterium haemolyticum Trueperella 3 genus 2 1 78 0 1069494 Trueperella pyogenes 1 species 75 0 1661 genus 1 0 2050 77 77 2051 0 Mobiluncus curtisii 1 species 1643682 0 1 394 order 6 Geodermatophilales 2 85030 0 1 392 family 5 16 Geodermatophilaceae 127 88138 0 genus 1 127 0 477641 Modestobacter marinus 1 species 0 1860 129 genus 1 0 1861 129 1 species Geodermatophilus obscurus 4 Blastococcus genus 2 1 120 38501 0 0 138336 116 species 1 Blastococcus saxobsidens order 39 14 Pseudonocardiales 85010 0 1 4990 4976 1 0 2070 63 Pseudonocardiaceae 38 family 40566 0 1 412 3 genus Actinosynnema 3 1 species Actinosynnema pretiosum 42197 0 198 Actinosynnema mirum 1 species 211 0 40567 Prauserella 1 genus 2 136 1 142577 0 135 530584 0 Prauserella marina 1 species 24 Pseudonocardia 8 genus 1 1110 1847 0 2619320 0 915 6 no rank 1641402 0 132 species 1 Pseudonocardia sp. HH130629-09 115 0 1096868 Pseudonocardia sp. EC080625-04 1 species 165 0 1688404 Pseudonocardia sp. EC080610-09 1 species species 1 Pseudonocardia sp. AL041005-10 445576 0 157 1096856 0 148 1 species Pseudonocardia sp. EC080619-01 Pseudonocardia sp. HH130630-07 species 1 198 1690815 0 Pseudonocardia dioxanivorans 1 species 171 240495 0 797 1 65496 0 18 Actinoalloteichus 6 genus no rank 2 323 0 2644606 species 1 Actinoalloteichus sp. AHMU CJ021 0 2072503 126 197 1612551 0 Actinoalloteichus sp. GBA129-24 species 1 89 340345 0 Actinoalloteichus hymeniacidonis species 1 0 1470176 142 1 species Actinoalloteichus hoggarensis 0 1612552 225 species 1 Actinoalloteichus sp. ADI127-7 1 171 0 1835 Saccharopolyspora 1 genus 2 1 species Saccharopolyspora erythraea 1836 0 170 1 genus 0 165301 227 0 1586287 227 species 1 Lentzea guizhouensis 43356 0 1 187 2 genus 3 Kutzneria 184 0 43357 Kutzneria albida 1 species genus 1 147 674734 0 147 2636053 0 1 no rank 147 0 1653480 Alloactinosynnema sp. L-07 1 species 1 178 0 2029 Kibdelosporangium 2 genus 2 species 1 Kibdelosporangium phytohabitans 860235 0 176 102 1851 0 1 genus 102 1852 0 Saccharomonospora viridis species 1 15 Amycolatopsis genus 7 1 1210 0 1813 2 no rank 351 2618356 0 species 1 Amycolatopsis sp. BJA-103 0 1911175 191 160 1896961 0 Amycolatopsis sp. AA4 species 1 species 1 Amycolatopsis methanolica 1814 0 148 Amycolatopsis mediterranei 1 species 182 33910 0 species 1 Amycolatopsis japonica 208439 0 170 344 0 31958 Amycolatopsis orientalis 1 species 2 Saccharothrix genus 2 236 1 2071 0 234 103731 0 Saccharothrix espanaensis 1 species order 2 1643683 0 74 85032 0 74 family 2 1 74 28048 0 Acidothermus 3 2 genus species 1 Acidothermus cellulolyticus 28049 0 71 0 85008 1 2262 order 19 5 Micromonosporales 1 2257 28056 0 34 Micromonosporaceae family 18 216 1 168694 0 Salinispora 2 genus 3 108 0 168695 Salinispora tropica species 1 1 species Salinispora arenicola 0 168697 106 1 969 1865 0 Actinoplanes 9 genus 6 0 196914 175 species 1 Actinoplanes friuliensis 1866 0 185 species 1 Actinoplanes missouriensis 2626549 0 600 no rank 3 species 1 Actinoplanes sp. N902-109 649831 0 198 species 1 Actinoplanes sp. SE50 2033844 0 201 1 species Actinoplanes sp. SE50/110 0 134676 201 4 genus 6 Micromonospora 0 1873 1 460 149 0 2617518 1 no rank 648999 0 149 1 species Micromonospora sp. L5 149 1003110 0 Verrucosispora maris species 1 1 species Micromonospora aurantiaca 0 47850 156 Plantactinospora 4 4 genus 578 1 0 673534 no rank 3 2631981 0 574 Plantactinospora sp. KBS50 species 1 190 2024580 0 0 2108470 173 species 1 Plantactinospora sp. BC1 1 species Plantactinospora sp. BB1 0 2071627 211 0 2039638 1 1788 12 order 9 Candidatus Nanopelagicales 1779 2162846 0 11 family 4 genus Candidatus Nanopelagicus 4 2039639 0 1 913 1 species Candidatus Nanopelagicus hibericus 0 1884915 237 Candidatus Nanopelagicus limnes species 1 331 0 1884634 Candidatus Nanopelagicus abundans species 1 341 0 1884916 genus 7 Candidatus Planktophila 12 622681 0 866 1 species 1 Candidatus Planktophila limnetica 0 573600 186 Candidatus Planktophila lacus species 1 151 0 1884913 148 0 1884914 Candidatus Planktophila dulcis species 1 1 species Candidatus Planktophila vernalis 0 1884907 159 Candidatus Planktophila sulfonica species 1 75 1884904 0 135 1884905 0 Candidatus Planktophila versatilis 1 species 142 1 1643684 0 2 Nakamurellales order 3 140 0 85031 2 family 0 53460 1 140 genus 2 1 Nakamurella 53461 0 139 1 species Nakamurella multipartita 0 85014 133 order 3 3 family 6 Glycomycetaceae 85034 0 1 133 Stackebrandtia 3 genus 2 1 127 0 283810 0 283811 124 species 1 Stackebrandtia nassauensis 0 1643818 109 1 no rank 1 genus 147067 0 109 109 0 2006 Thermobispora bispora 1 species 140 0 52018 no rank 1 140 0 1650658 Actinobacteria bacterium IMCC26256 species 1 1 9254 0 85006 45 Micrococcales order 130 3430 1 85023 0 Microbacteriaceae 14 family 45 447237 0 1 422 2 genus 3 Frondihabitans no rank 1 419 0 2626248 1 species Frondihabitans sp. PAMC 28766 1795630 0 419 337004 0 72 1 genus 1 species Microcella alkaliphila 0 279828 72 genus 1 112 0 1759331 1619308 0 112 species 1 Cnuibacter physcomitrellae 124 1 33877 0 2 Agromyces genus 2 122 0 453304 Agromyces aureus 1 species no rank 3 1655488 0 145 145 0 1655489 3 clade 0 529883 145 1 genus 3 2 Rhodoluna Rhodoluna lacicola 1 species 75 529884 0 Candidatus Rhodoluna planktonica species 1 68 0 535712 1 60 1434032 0 1 Pontimonas genus 2 59 1159327 0 Pontimonas salivibrio 1 species 6 genus Clavibacter 8 1573 0 432 1 species 5 98 Clavibacter michiganensis 28447 0 1 424 73 0 31963 Clavibacter nebraskensis subspecies 1 1 subspecies Clavibacter sepedonicus 0 31964 113 1 subspecies Clavibacter insidiosus 0 33014 70 subspecies 1 Clavibacter capsici 1874630 0 70 288 1 2034 0 4 Curtobacterium 4 genus 190 257496 0 no rank 2 0 1561023 103 1 species Curtobacterium sp. MR_MD2014 1 species Curtobacterium sp. BH-2-1-1 0 1905847 87 94 69373 0 Curtobacterium pusillum species 1 genus 1 1705353 0 55 1 species Aurantimicrobium minutum 708131 0 55 genus 2 Leifsonia 2 110932 0 1 212 0 1575 210 species 1 Leifsonia xyli 89 518733 0 1 genus 0 412690 89 species 1 Microterricola viridarii 145 1 0 69578 3 Cryobacterium genus 3 56 0 2649013 no rank 1 56 1978566 0 Cryobacterium sp. LW097 1 species 670052 0 86 1 species Cryobacterium arcticum 33882 0 1 1126 genus 14 Microbacterium 27 2609290 0 709 8 no rank Microbacterium sp. PAMC 28756 species 1 83 0 1795053 130 0 1714373 Microbacterium sp. No. 7 1 species Microbacterium sp. TPU 3598 species 1 78 1938334 0 72 2103230 0 Microbacterium sp. str. 'China' 1 species Microbacterium sp. XT11 species 1 61 0 367477 79 1696072 0 Microbacterium sp. CGR1 species 1 78 0 1916917 Microbacterium sp. 1.5R species 1 Microbacterium sp. BH-3-3-3 species 1 128 0 1906742 1 species Microbacterium testaceum 0 2033 97 90 162426 0 Microbacterium hominis species 1 64 0 84292 Microbacterium chocolatum 1 species 70 0 300019 Microbacterium paludicola 1 species 36805 0 69 species 1 Microbacterium aurum 2 genus 0 33886 134 68 0 145458 Rathayibacter toxicus species 1 0 33888 66 1 species Rathayibacter tritici 1 287 0 145357 Dermacoccaceae 7 family 4 57495 0 78 genus 1 1274 0 78 species 1 Dermacoccus nishinomiyaensis 112 0 745364 genus 1 species 1 Luteipulveratus mongoliensis 571913 0 112 1 genus 90 0 57499 1276 0 90 species 1 Kytococcus sedentarius 483 1 85021 0 4 Intrasporangiaceae 8 family 4 Intrasporangium 2 genus 1 120 0 53357 116 0 53358 Intrasporangium calvum 1 species 1 genus 109 265976 0 0 1758689 109 1 species Serinicoccus sp. JLT9 53457 0 124 1 genus 2 6 Janibacter Janibacter indicus species 1 118 0 857417 genus 2 Arsenicicoccus 1 0 267408 1 126 125 0 2663846 no rank 1 1 species Arsenicicoccus sp. oral taxon 190 1658671 0 125 132 1 0 145360 Sanguibacteraceae 1 3 family 60919 0 1 131 2 genus Sanguibacter 1 Sanguibacter keddieii species 1 130 60920 0 1 2456 1268 0 Micrococcaceae 22 36 family Pseudarthrobacter 6 genus 4 1 257 0 1742993 Pseudarthrobacter phenanthrenivorans species 1 117 361575 0 species 1 Pseudarthrobacter sulfonivorans 0 121292 59 75 85085 0 Pseudarthrobacter chlorophenolicus 1 species Kocuria 4 4 genus 1 243 0 57493 93 446860 0 Kocuria flava 1 species 80 71999 0 Kocuria palustris species 1 66 0 72000 Kocuria rhizophila 1 species 0 2078575 77 1 genus 1618207 0 77 1 species Arthrobacter sp. IHBB 11108 1 101 0 1742989 2 Glutamicibacter 2 genus Glutamicibacter arilaitensis species 1 99 0 256701 40 0 1645 genus 1 40 0 1646 Renibacterium salmoninarum 1 species 1 genus 1269 0 68 68 1270 0 Micrococcus luteus 1 species 1 genus 596707 0 119 37927 0 119 species 1 Sinomonas atrocyanea genus 1 0 1742992 78 43663 0 78 1 species Paenarthrobacter aurescens genus 3 Rothia 2 0 32207 91 1 Rothia mucilaginosa species 1 60 43675 0 Rothia dentocariosa species 1 29 2047 0 0 1868332 1 47 genus 2 Neomicrococcus 1 46 556325 0 Neomicrococcus aestuarii species 1 1 1313 1663 0 Arthrobacter 26 genus 15 Arthrobacter crystallopoietes species 1 79 0 37928 1043 235627 0 no rank 12 290399 0 74 species 1 Arthrobacter sp. FB24 1690248 0 57 species 1 Arthrobacter sp. LS16 Arthrobacter sp. U41 species 1 74 0 1849032 91 1494608 0 Arthrobacter sp. PAMC 25486 species 1 Arthrobacter sp. ZXY-2 1 species 55 1806905 0 Arthrobacter sp. PGP41 1 species 279 0 2079227 species 1 Arthrobacter sp. YC-RL1 0 1652545 62 Arthrobacter sp. QXT-31 1 species 63 0 1357915 69 0 2020486 Arthrobacter sp. YN 1 species 1118963 0 54 species 1 Arthrobacter sp. Rue61a 59 1771959 0 Arthrobacter sp. ATCC 21022 species 1 Arthrobacter sp. ERGS1:01 1 species 106 0 1704044 Arthrobacter alpinus species 1 165 0 656366 1 668 85017 0 4 Promicromonosporaceae 8 family 1 Cellulosimicrobium 3 genus 1 256 0 157920 1 species Cellulosimicrobium cellulans 0 1710 116 2624466 0 139 no rank 1 0 1980001 139 1 species Cellulosimicrobium sp. TH-20 1 249 0 254250 2 Isoptericola 3 genus Isoptericola dokdonensis species 1 129 372663 0 118 0 139208 Isoptericola variabilis species 1 0 186188 159 genus 1 159 186189 0 Xylanimonas cellulosilytica 1 species no rank 1 577468 0 80 0 2038 80 1 genus 2039 0 80 1 species Tropheryma whipplei 25 0 85022 family 1 genus 1 43673 0 25 0 43674 25 species 1 Jonesia denitrificans 10 family Dermabacteraceae 2 85020 0 1 869 36739 0 30 genus 1 0 1630135 30 species 1 Dermabacter vaginalis 6 genus 8 Brachybacterium 0 43668 775 1 108 0 43669 Brachybacterium faecium 1 species 0 2017484 334 species 1 Brachybacterium sp. VM2412 0 2017485 91 1 species Brachybacterium sp. VR2415 131 2623841 0 1 no rank Brachybacterium sp. P6-10-X1 species 1 131 1903186 0 1 species Brachybacterium ginsengisoli 0 1331682 103 genus 2 7 Devriesea 472568 0 1 62 472569 0 55 1 species Devriesea agamarum 0 85018 1 74 family 2 Dermatophilaceae 1 1862 0 73 genus 1 species 1 Dermatophilus congolensis 1863 0 73 3 family 3 Brevibacteriaceae 0 85019 1 169 166 1 0 1696 1 Brevibacterium 2 genus Brevibacterium linens 1 species 165 0 1703 Cellulomonadaceae 1 family 6 407 1 0 85016 6 Cellulomonas 5 genus 1 406 0 1707 Cellulomonas fimi species 1 128 1708 0 Cellulomonas gilvus 1 species 72 11 0 no rank 1 0 2620175 78 78 0 2003551 Cellulomonas sp. PSBB021 1 species species 1 Cellulomonas flavigena 0 1711 122 0 125316 129 2 family 2 Beutenbergia genus 2 129 1 0 84756 0 84757 127 species 1 Beutenbergia cavernae order 7 Frankiales 14 85013 0 1249 1 0 74712 1235 1 6 family Frankiaceae 5 6 Frankia genus 5 1230 1 1854 0 1 no rank 251 0 2632575 Frankia sp. EAN1pec species 1 251 298653 0 0 1859 543 species 1 Frankia alni 0 106370 228 species 1 Frankia casuarinae 298654 0 202 1 species Frankia inefficax Streptomycetales 38 82 order 1 20912 0 85011 family 81 Streptomycetaceae 57 2062 0 1 20874 6 Kitasatospora 5 genus 1 1431 2063 0 species 1 Kitasatospora setae 2066 0 373 210 0 2633591 1 no rank 1 species Kitasatospora sp. MMS16-BH015 0 2018025 210 1894 0 172 1 species Kitasatospora aureofaciens 0 68173 670 1 species Kitasatospora albolonga 75 genus 290 Streptomyces 1883 0 1 19386 147 29303 0 Streptomyces cattleya species 1 Streptomyces chartreusis species 1 121 1969 0 5037 0 2593676 24 no rank species 1 Streptomyces sp. 3211 1964449 0 265 1 species Streptomyces sp. Tue 6075 1661694 0 186 1 species Streptomyces sp. 4F 1751294 0 125 species 1 Streptomyces sp. RTd22 0 1841249 223 1 species Streptomyces sp. SAT1 0 1849967 308 Streptomyces sp. CFMR 7 1 species 188 0 1649184 1 species Streptomyces sp. Sge12 1972846 0 243 1 species Streptomyces sp. CCM_MD2014 0 1561022 172 Streptomyces sp. P3 1 species 291 2135430 0 1 species Streptomyces sp. CMB-StM0423 0 2059884 215 153 0 1961713 Streptomyces sp. MOE7 species 1 1 species Streptomyces sp. Mg1 465541 0 223 1 species Streptomyces sp. S8 0 1837283 169 157 2094021 0 Streptomyces sp. WAC00288 species 1 species 1 Streptomyces sp. PAMC 26508 1265601 0 115 Streptomyces sp. M56 species 1 351 1495638 0 Streptomyces sp. CLI2509 1 species 174 0 1984801 206662 0 299 species 1 Streptomyces sp. FR-008 1812480 0 242 species 1 Streptomyces sp. fd1-xmd 0 1262452 218 1 species Streptomyces sp. 769 167 0 234612 Streptomyces sp. TN58 1 species 239 0 1725411 Streptomyces sp. CdTB01 species 1 species 1 Streptomyces sp. CNQ-509 0 444103 165 Streptomyces sp. SirexAA-E species 1 149 862751 0 Streptomyces lividans 1 species 213 0 1916 1 species Streptomyces ambofaciens 1889 0 217 1 species Streptomyces pratensis 1169025 0 145 Streptomyces venezuelae species 1 418 54571 0 species 1 Streptomyces malaysiensis 92644 0 284 Streptomyces collinus 1 species 162 0 42684 1 species Streptomyces hygroscopicus 1912 0 553 157 1935 0 Streptomyces violaceoruber species 1 186 2049881 0 Streptomyces sp. XZHG99 1 species 0 1930 232 species 1 Streptomyces scabiei Streptomyces pactum 1 species 441 68249 0 75293 0 733 species 1 Streptomyces autolyticus 151 285473 0 Streptomyces rubrolavendulae species 1 1783515 0 161 species 1 Streptomyces sp. S10(2016) species 1 Streptomyces pluripotens 0 1355015 180 0 164348 214 species 1 Streptomyces puniciscabiei 325 0 629295 2 species group 1482558 0 166 species subgroup 1 species 1 Streptomyces globisporus 0 1908 166 1 species subgroup 1482596 0 159 159 1911 0 Streptomyces griseus 1 species species 1 Streptomyces pristinaespiralis 38300 0 164 0 68280 236 1 species Streptomyces violaceusniger 362257 0 222 species 1 Streptomyces vietnamensis 1907 0 231 1 species Streptomyces glaucescens 388 0 379067 Streptomyces bingchenggensis 1 species 1914 0 260 1 species Streptomyces lavendulae species 1 Streptomyces fulvissimus 68202 0 167 species 1 Streptomyces peucetius 0 1950 141 species 1 Streptomyces leeuwenhoekii 0 1437453 149 species 1 Streptomyces albulus 0 68570 1656 163 68214 0 Streptomyces griseochromogenes species 1 species 1 Streptomyces albireticuli 1940 0 174 1117 1477431 0 species group 2 958 0 1902 Streptomyces coelicolor species 1 159 42239 0 Streptomyces sampsonii species 1 Streptomyces lincolnensis 1 species 271 1915 0 species 1 Streptomyces xiamenensis 408015 0 101 1 species Streptomyces albus 1888 0 593 Streptomyces formicae 1 species 273 1616117 0 201 1926 0 Streptomyces reticuli 1 species Streptomyces avermitilis 1 species 272 33903 0 0 1642299 247 species 1 Streptomyces alfalfae 1 species Streptomyces cyaneogriseus 0 68192 143 Streptomyces niveus species 1 206 193462 0 1 species Streptomyces xinghaiensis 0 1038928 199 0 67267 206 species 1 Streptomyces alboflavus species 1 Streptomyces gilvosporeus 553510 0 224 157 0 146923 Streptomyces parvulus 1 species 0 1971 213 species 1 Streptomyces noursei Streptomyces lydicus 1 species 475 47763 0 1901 0 170 1 species Streptomyces clavuligerus Propionibacteriales 13 order 31 1 2002 85009 0 1012 1 31957 0 8 Propionibacteriaceae 18 family 29404 0 97 1 2 genus 1 Microlunatus 29405 0 96 1 species Microlunatus phosphovorus 1912216 0 1 218 4 genus 4 Cutibacterium 96 1747 0 Cutibacterium acnes 1 species 1 species Cutibacterium granulosum 0 33011 61 33010 0 57 1 species Cutibacterium avidum 2 Tessaracoccus 5 genus 1 316 72763 0 75 399497 0 Tessaracoccus flavescens 1 species 1 no rank 81 2635419 0 Tessaracoccus sp. T2.5-30 species 1 81 0 1909732 0 1610493 75 species 1 Tessaracoccus flavus 0 1332264 83 species 1 Tessaracoccus aquimaris 1743 0 1 151 3 genus 1 Propionibacterium 1744 0 120 species 1 Propionibacterium freudenreichii 2608905 0 30 no rank 1 1 species Propionibacterium sp. oral taxon 193 671223 0 30 genus 1 2801844 0 60 1750 0 60 1 species Pseudopropionibacterium propionicum 1912215 0 114 1 genus 0 1748 114 species 1 Acidipropionibacterium acidipropionici 1 genus 0 203133 48 2633994 0 48 no rank 1 1871034 0 48 species 1 Propionimicrobium sp. Marseille-P3275 family 12 Nocardioidaceae 8 0 85015 1 977 genus 4 13 Nocardioides 1839 0 1 407 Nocardioides dokdonensis 1 species 177 0 450734 126 0 2615069 no rank 1 126 0 196162 Nocardioides sp. JS614 1 species 0 2045452 91 species 1 Nocardioides sp. 78 11 Kribbella 2 genus 155 1 0 182639 Kribbella flavida species 1 144 0 182640 0 2044 204 1 2 genus 1 Pimelobacter Pimelobacter simplex species 1 203 0 2045 2 Micropruina 2 genus 89 1 116071 0 1 species Micropruina glycogenica 0 75385 87 0 2040 114 1 genus 114 0 2041 Aeromicrobium erythreum 1 species order 4 Catenulisporales 5 0 414714 860 1 0 414877 1 855 3 family Catenulisporaceae 4 1 851 0 414878 Catenulispora 2 2 genus species 1 Catenulispora acidiphila 0 304895 849 9 Streptosporangiales order 13 1 1195 0 85012 6 family Nocardiopsaceae 2 83676 0 512 1 0 83677 68 1 genus 2021 0 68 species 1 Thermobifida fusca 1 442 0 2013 Nocardiopsis 6 4 genus 131 0 280236 Nocardiopsis gilva species 1 2014 0 201 1 species Nocardiopsis dassonvillei Nocardiopsis alba 1 species 104 53437 0 2 family 110 0 2012 110 1 0 2019 Thermomonospora 2 genus 2 2020 0 108 species 1 Thermomonospora curvata Streptosporangiaceae 4 4 family 1 564 2004 0 Nonomuraea 5 2 genus 334 1 0 83681 0 2593643 329 no rank 1 1 species Nonomuraea sp. ATCC 55076 0 1909395 329 2000 0 226 genus 1 Streptosporangium roseum 1 species 226 2001 0 0 85004 1 1441 order 24 Bifidobacteriales 2 14 Bifidobacteriaceae family 23 1 1439 0 31953 1 genus 40 0 196081 Scardovia inopinata species 1 40 78259 0 1 genus 2701 0 302 Gardnerella vaginalis 1 species 302 0 2702 1 1049 0 1678 Bifidobacterium 13 19 genus 1 species Bifidobacterium scardovii 158787 0 51 0 35760 60 species 1 Bifidobacterium choerinum 39 0 28026 Bifidobacterium pseudocatenulatum species 1 0 28025 44 species 1 Bifidobacterium animalis 28 33905 0 Bifidobacterium thermophilum 1 species Bifidobacterium indicum species 1 18 1691 0 63 1680 0 Bifidobacterium adolescentis 1 species 128 638619 0 Bifidobacterium actinocoloniiforme 1 species Bifidobacterium breve 1 species 128 0 1685 81 0 1694 Bifidobacterium pseudolongum 1 species 0 1689 50 species 1 Bifidobacterium dentium 0 216816 131 species 1 Bifidobacterium longum species 1 Bifidobacterium asteroides 0 1684 35 1687 0 22 1 species Bifidobacterium coryneforme species 1 Bifidobacterium angulatum 0 1683 42 52 1 0 1686 15 Bifidobacterium catenulatum species 2 630129 0 37 subspecies 1 Bifidobacterium kashiwanohense 64 1681 0 Bifidobacterium bifidum 1 species 1 genus 0 196082 34 78258 0 34 species 1 Parascardovia denticolens order 3 Actinopolysporales 1 622450 0 1 80 family 2 79 622451 0 1 79 0 1849 1 Actinopolyspora 2 genus 78 414996 0 Actinopolyspora erythraea 1 species 2 order 3 Kineosporiales 0 622452 158 1 1 family 155 0 83778 155 0 33981 genus 1 155 0 131568 Kineococcus radiotolerans 1 species 85007 0 1 14765 160 order Corynebacteriales 76 0 697024 36 no rank 2 36 1 0 1847725 1 Lawsonella genus 2 1 species Lawsonella clevelandensis 0 1528099 35 3 Dietziaceae family 4 1 172 0 85029 169 1 37914 0 Dietzia 2 3 genus no rank 1 0 2617939 94 Dietzia sp. oral taxon 368 species 1 94 712270 0 1 species Dietzia timorensis 0 499555 73 31 family Nocardiaceae 19 0 85025 3906 1 2746 1 1827 0 60 Rhodococcus 23 genus 43767 0 116 1 species Rhodococcus hoagii Rhodococcus qingshengii 1 species 93 0 334542 142 0 191292 Rhodococcus aetherivorans 1 species 37919 0 494 species 1 Rhodococcus opacus species 1 Rhodococcus erythropolis 1833 0 164 12 no rank 192944 0 1037 Rhodococcus sp. p52 1 species 96 935199 0 74 0 1653478 Rhodococcus sp. PBTS 1 species 1 679318 0 62 1 species Rhodococcus sp. WMMA185 155 0 1033922 Rhodococcus sp. WB1 species 1 Rhodococcus sp. B7740 species 1 83 1564114 0 53 1727214 0 Rhodococcus sp. H-CA8f species 1 1 species Rhodococcus sp. BH4 0 1807790 72 151 0 1805827 Rhodococcus sp. MTM3W5.2 species 1 83 0 1045808 Rhodococcus sp. YL-1 1 species Rhodococcus sp. 008 species 1 70 0 1723645 52 0 1653479 Rhodococcus sp. PBTS 2 1 species 86 0 1570939 Rhodococcus sp. 2G 1 species Rhodococcus rhodochrous 1 species 99 1829 0 1830 0 163 1 species Rhodococcus ruber 0 103816 135 1 species Rhodococcus pyridinivorans Rhodococcus jostii 1 species 153 132919 0 species 1 Rhodococcus fascians 1828 0 90 15 Nocardia 7 genus 1141 1 1817 0 221 135487 0 Nocardia cyriacigeorgica 1 species 139 455432 0 Nocardia terpenica species 1 131 37330 0 Nocardia nova species 1 1 species Nocardia seriolae 0 37332 155 37329 0 195 species 1 Nocardia farcinica 1 species Nocardia brasiliensis 37326 0 285 85028 0 1 275 family 4 Tsukamurellaceae 2 4 Tsukamurella genus 3 273 1 2060 0 57704 0 169 1 species Tsukamurella tyrosinosolvens Tsukamurella paurometabola species 1 100 2061 0 Mycobacteriaceae 19 56 family 1 6323 0 1762 1 genus 76 0 697025 76 0 639313 Hoyosella subflava 1 species 206 1073531 0 genus 2 0 1788 94 species 1 Mycobacterium terrae Mycobacterium sinense species 1 112 875328 0 34 genus 171 Mycobacterium 0 1763 1 3635 901 120793 0 species group 8 1764 0 440 species 1 Mycobacterium avium 0 339268 84 1 species Mycobacterium colombiense species 1 Mycobacterium marseillense 701042 0 75 42 0 1138383 Mycobacterium paraintracellulare 1 species 1767 0 260 1 species 4 Mycobacterium intracellulare 51 30 35617 0 Mycobacterium indicus pranii 1 subspecies 0 222805 114 1 subspecies Mycobacterium chimaera Mycobacterium yongonense subspecies 1 65 1203599 0 Mycobacterium haemophilum 1 species 64 29311 0 309 0 77643 species group 4 1 261 1773 0 Mycobacterium tuberculosis 99 3 species Mycobacterium africanum 1 biotype 80 33894 0 Mycobacterium bovis 1 biotype 82 0 1765 48 78331 0 Mycobacterium canettii 1 species 0 2249310 88 species group 1 1 species Mycobacterium shigaense 722731 0 88 1404 2642494 0 no rank 13 111 164756 0 Mycobacterium sp. MCS species 1 Mycobacterium sp. NRRL B-3805 species 1 81 1570328 0 120 189918 0 Mycobacterium sp. KMS 1 species Mycobacterium sp. VKM Ac-1817D 1 species 103 0 1273687 123 0 2051552 Mycobacterium sp. PYR15 species 1 Mycobacterium sp. YC-RL4 1 species 131 0 1682113 35 0 1168287 Mycobacterium sp. MOTT36Y species 1 species 1 Mycobacterium sp. QIA-37 0 1561223 70 Mycobacterium sp. JS623 species 1 177 0 212767 Mycobacterium sp. JLS 1 species 113 164757 0 1 species Mycobacterium sp. WY10 1920667 0 109 0 1545728 96 1 species Mycobacterium sp. EPa45 135 1879023 0 Mycobacterium sp. djl-10 species 1 Mycobacterium leprae species 1 21 0 1769 Mycobacterium marinum 1 species 213 0 1781 species 1 Mycobacterium liflandii 261524 0 111 Mycobacterium kansasii 1 species 110 1768 0 1809 0 100 species 1 Mycobacterium ulcerans 0 482462 143 1 species Mycobacterium dioxanotrophicus 0 670516 807 5 genus species 1 Mycobacterium abscessus 36809 0 522 1 species Mycobacterium stephanolepidis 0 1520670 56 1578165 0 61 species 1 Mycobacterium saopaulense species 1 Mycobacterium chelonae 1774 0 93 Mycobacterium immunogenum 1 species 75 83262 0 13 genus 1866885 0 1580 1797 0 88 1 species Mycobacterium thermoresistibile 1771 0 126 species 1 Mycobacterium phlei 1 species Mycobacterium chubuense 0 1800 147 121 110539 0 Mycobacterium vanbaalenii species 1 1 species Mycobacterium vaccae 1810 0 120 Mycobacterium gilvum 1 species 189 0 1804 Mycobacterium rhodesiae species 1 101 36814 0 114 0 758802 Mycobacterium litorale species 1 1 species Mycobacterium neoaurum 0 1795 81 1 species Mycobacterium goodii 134601 0 115 Mycobacterium smegmatis species 1 127 1772 0 species 1 Mycobacterium fortuitum 1766 0 99 152 0 1791 Mycobacterium aurum species 1 family 9 Gordoniaceae 6 85026 0 1 691 Gordonia 12 genus 8 1 685 0 2053 Gordonia terrae 1 species 104 0 2055 1 species Gordonia polyisoprenivorans 0 84595 95 species 1 Gordonia bronchialis 2054 0 106 0 1136941 103 1 species Gordonia phthalatica 1 species Gordonia iterans 1004901 0 82 2 no rank 183 0 2657482 species 1 Gordonia sp. KTR9 0 337191 90 2059875 0 93 1 species Gordonia sp. YC-JH1 49 316606 0 1 family genus 1 286801 0 49 species 1 Segniliparus rotundus 0 286802 49 3237 1 1653 0 10 Corynebacteriaceae 52 family 1716 0 3227 1 genus 51 Corynebacterium 52 0 1408191 58 species 1 Corynebacterium deserti Corynebacterium ammoniagenes species 1 41 1697 0 1718 0 187 species 1 Corynebacterium glutamicum 1 species Corynebacterium imitans 0 156978 35 69 0 2624378 2 no rank 1 species Corynebacterium sp. ATCC 6931 1487956 0 35 0 702967 34 1 species Corynebacterium sp. NML98-0116 Corynebacterium mustelae 1 species 56 0 571915 1 species Corynebacterium kutscheri 0 35755 76 Corynebacterium atypicum species 1 28 0 191610 Corynebacterium resistens species 1 28 258224 0 1 species Corynebacterium aurimucosum 169292 0 29 70 0 89154 Corynebacterium terpenotabidum species 1 92 0 43770 Corynebacterium striatum 1 species 76 1223514 0 Corynebacterium humireducens 1 species Corynebacterium stationis species 1 35 1705 0 0 1404244 57 species 1 Corynebacterium glyciniphilum Corynebacterium aquilae 1 species 67 0 203263 0 160386 41 1 species Corynebacterium casei 33 161895 0 Corynebacterium phocae 1 species 74 575200 0 Corynebacterium maris species 1 1 species Corynebacterium flavescens 28028 0 46 33 401472 0 Corynebacterium ureicelerivorans 1 species 78 1727 0 Corynebacterium variabile 1 species 0 146827 45 species 1 Corynebacterium simulans 42817 0 35 1 species Corynebacterium argentoratense 1 species Corynebacterium pseudotuberculosis 0 1719 57 [Brevibacterium] flavum 1 species 58 92706 0 42 152794 0 Corynebacterium efficiens 1 species 46 0 136857 Corynebacterium testudinoris species 1 species 1 Corynebacterium uterequi 0 1072256 399 species 1 Corynebacterium callunae 1721 0 52 1 species Corynebacterium glaucum 187491 0 47 Corynebacterium doosanense 1 species 60 0 1121358 0 161899 36 species 1 Corynebacterium singulare 1 species Corynebacterium urealyticum 0 43771 65 71 191493 0 Corynebacterium sphenisci species 1 species 1 Corynebacterium jeikeium 38289 0 91 species 1 Corynebacterium vitaeruminis 0 38305 69 species 1 Corynebacterium halotolerans 225326 0 89 Corynebacterium marinum species 1 55 0 349751 Corynebacterium kroppenstedtii 1 species 27 0 161879 1 species Corynebacterium lactis 0 1231000 40 1050174 0 31 species 1 Corynebacterium epidermidicanis 40 0 161896 Corynebacterium camporealensis species 1 species 1 Corynebacterium crudilactis 1652495 0 64 Corynebacterium diphtheriae species 1 95 1717 0 1 species Corynebacterium frankenforstense 0 1230998 74 35757 0 62 1 species Corynebacterium cystitidis Corynebacterium falsenii species 1 45 0 108486 1 species Corynebacterium ulcerans 65058 0 71 481 0 1752188 no rank 4 species 1 Actinobacteria bacterium IMCC25003 0 1848255 59 1 species Actinobacteria bacterium IMCC19121 1848754 0 179 species 1 Actinobacteria bacterium IMCC26103 0 1848756 149 0 1848755 94 species 1 Actinobacteria bacterium IMCC26077 class 25 Coriobacteriia 3 0 84998 1 1112 84999 0 1 395 order 9 Coriobacteriales 6 5 family 1 Atopobiaceae 1643824 0 1 280 1 genus 76 0 2767353 76 1382 0 Atopobium parvulum 1 species 133925 0 203 3 genus Olsenella sp. Marseille-P2300 species 1 70 1805478 0 133926 0 51 species 1 Olsenella uli 82 0 2638792 1 no rank 1 species Olsenella sp. oral taxon 807 0 712411 82 109 0 84107 family 3 0 102106 30 genus 1 1 species Collinsella aerofaciens 0 74426 30 no rank 1 84113 0 49 49 1531429 0 Coriobacteriaceae bacterium 68-1-3 species 1 genus 1 30 0 33870 33871 0 30 species 1 Coriobacterium glomerans order 15 Eggerthellales 5 1643822 0 1 714 14 family Eggerthellaceae 15 0 1643826 1 709 genus 1 0 1981050 130 species 1 Phoenicibacter massiliensis 1944646 0 130 2 genus Slackia 1 84108 0 53 1 52 84110 0 Slackia heliotrinireducens species 1 Gordonibacter 4 genus 3 206 1 0 644652 0 1335613 115 1 species Gordonibacter urolithinfaciens Gordonibacter massiliensis 1 species 87 1841863 0 0 84162 72 1 genus 72 0 84163 Cryptobacterium curtum species 1 Denitrobacterium 1 2 genus 49 1 0 79603 79604 0 48 1 species Denitrobacterium detoxificans 0 84111 128 1 3 genus Eggerthella 1 45 2648737 0 1 no rank 1 species Eggerthella sp. YY7918 502558 0 45 Eggerthella lenta 1 species 82 84112 0 1 genus 56 447020 0 56 0 446660 Adlercreutzia equolifaciens 1 species 6 class 442 84992 0 1 442 84993 0 8 Acidimicrobiales 6 order 290 2448023 0 family 2 1 290 682522 0 Ilumatobacter 6 genus 2 284 467094 0 Ilumatobacter coccineus 1 species 5 Acidimicrobiaceae 3 family 1 144 0 84994 1 139 0 53634 10 Acidimicrobium genus 2 53635 0 129 species 1 Acidimicrobium ferrooxidans class 4 1497346 0 860 1 860 0 588673 Solirubrobacterales 9 4 order Conexibacteraceae 3 3 family 851 1 320583 0 Conexibacter 5 genus 2 848 1 191494 0 191495 0 843 1 species Conexibacter woesei 2 no rank 78 1859062 0 Thermobaculum 1 genus 2 1 78 0 262406 1 species Thermobaculum terrenum 166501 0 77 544448 0 1 20515 101 phylum Tenericutes 1 323 0 2799557 1 no rank 0 1912503 323 genus 1 1 no rank 2624196 0 323 323 1541959 0 Candidatus Izimaplasma sp. HR1 1 species 1 19493 31969 0 Mollicutes 30 class 97 1954 1 0 186329 2 Acholeplasmatales 13 order Acholeplasmataceae 1 family 12 1952 1 0 2146 1029 1 2147 0 Acholeplasma 4 genus 5 336 38986 0 Acholeplasma palmae 1 species 1 species Acholeplasma oculi 35623 0 279 248 2148 0 Acholeplasma laidlawii species 1 162 0 61635 Acholeplasma brassicae 1 species 6 genus 12 Candidatus Phytoplasma 33926 0 922 1 537 0 85620 3 species group 1 species Aster yellows witches'-broom phytoplasma 0 229545 177 species 1 Maize bushy stunt phytoplasma 0 202462 171 1 species Onion yellows phytoplasma 0 100379 189 1 species group 199 0 85630 199 0 37692 Candidatus Phytoplasma mali 1 species 1 species group 85632 0 174 59748 0 174 species 1 Candidatus Phytoplasma australiense 0 186328 1 8562 39 order 31 Entomoplasmatales 0 2131 5933 1 24 family 3 Spiroplasmataceae 23 genus 90 Spiroplasma 2132 0 5930 1 0 315358 177 species 1 Spiroplasma eriocheiris 385 2145 0 Spiroplasma taiwanense species 1 species 1 Spiroplasma syrphidicola 216945 0 174 1 species Spiroplasma kunkelii 47834 0 302 1 species Spiroplasma diminutum 0 216936 348 249 2139 0 Spiroplasma clarkii species 1 0 216937 400 1 species Spiroplasma floricola Spiroplasma atrichopogonis 1 species 142 0 1114980 175 216933 0 Spiroplasma chrysopicola species 1 Spiroplasma cantharicola 1 species 361 362837 0 Spiroplasma citri species 1 266 2133 0 1 species Spiroplasma helicoides 0 216938 293 Spiroplasma litorale 1 species 381 216942 0 0 216934 330 species 1 Spiroplasma corruscae 180 216944 0 Spiroplasma sabaudiense 1 species 216935 0 297 species 1 Spiroplasma culicicola 1 species Spiroplasma apis 0 2137 203 279 2136 0 Spiroplasma monobiae 1 species no rank 2 0 2637901 392 Spiroplasma sp. NBRC 100390 species 1 196 1914410 0 196 0 1898044 Spiroplasma sp. TU-14 1 species 1 species Spiroplasma mirum 2144 0 142 364 0 216946 Spiroplasma turonicum 1 species 1 2598 0 33925 6 Entomoplasmataceae 14 family 1869 1 46239 0 29 Mesoplasma genus 8 Mesoplasma coleopterae species 1 255 324078 0 216427 0 211 species 1 Mesoplasma chauliocola Mesoplasma lactucae species 1 171 0 138853 species 1 Mesoplasma syrphidae 225999 0 200 0 2149 262 1 species Mesoplasma entomophilum 497 2151 0 Mesoplasma florum 1 species 219745 0 244 1 species Mesoplasma tabanidae 1 723 46238 0 Entomoplasma 9 5 genus 0 215578 223 1 species Entomoplasma somnilux 0 81459 237 species 1 Entomoplasma melaleucae 177 0 214888 Entomoplasma luminosum 1 species Entomoplasma freundtii species 1 77 74700 0 Mycoplasmatales 47 order 44 8947 1 0 2085 0 2092 1 8900 family 43 Mycoplasmataceae 29 400 1 2129 0 3 Ureaplasma genus 3 species 1 Ureaplasma parvum 0 134821 221 species 1 Ureaplasma urealyticum 0 2130 176 0 2093 5930 1 genus 27 64 Mycoplasma Mycoplasma genitalium 1 species 113 2097 0 1 species Mycoplasma haemocanis 0 136241 138 Mycoplasma gallisepticum 1 species 197 0 2096 species 1 Mycoplasma haemofelis 29501 0 361 1 no rank 184 0 2683645 Mycoplasma sp. (ex Biomphalaria glabrata) 1 species 184 0 1749074 Mycoplasma hyopneumoniae species 1 353 0 2099 Mycoplasma putrefaciens 1 species 297 2123 0 1 species Mycoplasma canadense 0 29554 245 0 2111 132 1 species Mycoplasma arthritidis species 1 Mycoplasma mobile 0 2118 277 species 1 Mycoplasma parvum 0 984991 133 0 65123 44 1 species Mycoplasma wenyonii 0 45362 213 species 1 Mycoplasma bovoculi 50052 0 194 1 species Mycoplasma crocodyli Mycoplasma yeatsii 1 species 305 0 51365 0 2100 228 1 species Mycoplasma hyorhinis 0 2098 314 species 1 Mycoplasma hominis 105 0 57372 Mycoplasma suis 1 species 133 0 2128 Mycoplasma flocculare species 1 1434 0 656088 species group 3 1 species Mycoplasma leachii 0 2105 368 2102 0 702 1 species Mycoplasma mycoides 2095 0 364 species 1 Mycoplasma capricolum Mycoplasma dispar 1 species 112 86660 0 1 species Mycoplasma penetrans 28227 0 265 2104 0 25 species 1 Mycoplasma pneumoniae species 1 Mycoplasma ovis 0 171632 64 0 2767358 2541 genus 12 species 1 Mycoplasma bovis 0 28903 416 0 2109 139 species 1 Mycoplasma synoviae 162 48003 0 Mycoplasma pullorum 1 species 259 0 171284 Mycoplasma cynos 1 species 212 0 2115 Mycoplasma fermentans species 1 120 2113 0 Mycoplasma californicum 1 species species 1 Mycoplasma bovigenitalium 0 2112 146 Mycoplasma bovirhinis 1 species 160 0 29553 Mycoplasma pulmonis 1 species 240 0 2107 2094 0 214 1 species Mycoplasma arginini 259 0 29555 Mycoplasma canis 1 species 214 0 2110 Mycoplasma agalactiae 1 species 2 no rank 0 713063 698 1 species Tenericutes bacterium MO-XQ 1911684 0 372 1911683 0 326 species 1 Tenericutes bacterium MZ-XQ phylum 34 1943 1297 0 188787 0 1 1943 class 34 14 Deinococci 1 937 118964 0 Deinococcales 15 order 15 1 922 0 183710 3 Deinococcaceae family 14 919 1 0 1298 19 Deinococcus genus 13 Deinococcus actinosclerus 1 species 60 0 1768108 131 0 55148 Deinococcus proteolyticus species 1 0 1182568 72 species 1 Deinococcus puniceus 0 309887 71 1 species Deinococcus maricopensis 0 432329 62 species 1 Deinococcus peraridilitoris species 1 Deinococcus deserti 310783 0 64 Deinococcus gobiensis species 1 87 0 502394 1309411 0 70 1 species Deinococcus soli Cha et al. 2016 51 68909 0 Deinococcus geothermalis 1 species 78 0 1299 Deinococcus radiodurans 1 species 77 0 1182571 Deinococcus swuensis 1 species no rank 1 77 2623546 0 1 species Deinococcus sp. NW-56 0 2080419 77 1 886 0 68933 Thermales 11 15 order 6 Thermaceae family 14 1 875 188786 0 2 genus 65551 0 161 Meiothermus ruber species 1 93 277 0 1 species Meiothermus silvanus 0 52022 68 1 91 0 208447 Oceanithermus 4 2 genus 87 0 187137 Oceanithermus profundus 1 species 8 genus Thermus 10 0 270 1 567 1 species Thermus parvatiensis 456163 0 63 67 271 0 Thermus aquaticus 1 species Thermus thermophilus 1 species 177 274 0 Thermus scotoductus species 1 57 37636 0 0 56956 64 1 species Thermus brockianus 56957 0 63 1 species Thermus oshimai no rank 1 66 2619321 0 1111069 0 66 species 1 Thermus sp. CCB_US3_UF1 1 genus 186191 0 50 1 species Marinithermus hydrothermalis 0 186192 50 3 order 106 2762275 0 0 332247 106 1 family 3 Trueperaceae 1 Truepera 4 2 genus 105 1 332248 0 101 332249 0 Truepera radiovictrix species 1 2323 0 336 3 no rank 1783234 0 336 clade 3 phylum 1 32 0 95818 32 1895827 0 no rank 1 species 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 0 32 2 clade 0 95901 304 304 2497643 0 2 class order 2 304 2497644 0 2497645 0 304 family 2 genus 2 4 Candidatus Babela 0 1551504 1 304 Candidatus Babela massiliensis species 1 300 673862 0 1 693 0 74152 3 Elusimicrobia phylum 6 356 447830 0 3 class 3 order 1783344 0 356 1 356 1783343 0 Endomicrobiaceae 2 family 3 1408194 0 354 genus 2 species 1 Endomicrobium proavitum 1408281 0 177 1408204 0 177 species 1 Candidatus Endomicrobium trichonymphae 99260 0 188 1 no rank 1 species uncultured Termite group 1 bacterium 167965 0 188 0 641853 146 class 1 order 1 146 641854 0 1 family 146 641876 0 1 genus 0 423604 146 0 423605 146 species 1 Elusimicrobium minutum 0 32066 13879 24 phylum class 24 17 Fusobacteriia 203490 0 1 13879 Fusobacteriales 23 order 23 1 13862 203491 0 12 family 14 Fusobacteriaceae 0 203492 1 10603 44 Fusobacterium 9 genus 1 10188 848 0 200 0 859 Fusobacterium necrophorum 1 species 1966 860 0 Fusobacterium periodonticum 1 species Fusobacterium mortiferum species 1 612 0 850 1264 0 856 Fusobacterium varium 1 species Fusobacterium gonidiaformans species 1 311 0 849 0 861 682 1 species Fusobacterium ulcerans 1138 1583098 0 Fusobacterium hwasookii species 1 Fusobacterium nucleatum species 1 3971 0 851 genus 2 2 Ilyobacter 167639 0 1 401 0 167642 399 1 species Ilyobacter polytropus 1 3236 0 1129771 Leptotrichiaceae 10 family 10 397 1 0 168808 Sneathia 3 genus 2 Sneathia amnii species 1 394 187101 0 genus 1 384 32068 0 Sebaldella termitidis 1 species 384 0 826 34104 0 592 genus 1 592 0 34105 Streptobacillus moniliformis 1 species 32067 0 1 1853 genus 5 Leptotrichia 3 40542 0 443 species 1 Leptotrichia buccalis 1407 2633022 0 3 no rank 1785996 0 513 1 species Leptotrichia sp. oral taxon 847 species 1 Leptotrichia sp. oral taxon 498 712368 0 529 0 712357 365 species 1 Leptotrichia sp. oral taxon 212 phylum 10 1765 200930 0 10 class Deferribacteres 7 68337 0 1 1765 8 Deferribacterales 9 order 1 1758 191393 0 8 family 4 Deferribacteraceae 0 191394 1 1750 309 0 545865 genus 1 309 0 477976 Calditerrivibrio nitroreducens 1 species Deferribacter 2 2 genus 1 826 53572 0 Deferribacter desulfuricans 1 species 824 197162 0 207 1 117999 0 1 Denitrovibrio genus 2 Denitrovibrio acetiphilus species 1 206 0 118000 genus 2 1 Flexistipes 2351 0 1 404 403 2352 0 Flexistipes sinusarabici 1 species 0 68297 651 5 phylum class 5 Dictyoglomia 2 0 203486 1 651 order 4 0 203487 649 0 203488 649 1 family 4 4 Dictyoglomaceae 13 0 1 645 genus 3 2 Dictyoglomus 329 0 14 Dictyoglomus thermophilum species 1 513050 0 314 species 1 Dictyoglomus turgidum 22 phylum 0 200783 3302 187857 0 1 3302 class 22 10 Aquificae 1 2777 32069 0 Aquificales 3 order 17 family 4 1302 0 224027 182899 0 319 genus 1 319 309805 0 Persephonella marina species 1 3 genus Sulfurihydrogenibium 11 212790 0 983 1 1 no rank 0 2619248 563 0 436114 563 1 species Sulfurihydrogenibium sp. YO3AOP1 1 species Sulfurihydrogenibium azorense 309806 0 409 1 no rank 133 90150 0 133 0 412592 1 genus 1 species Thermosulfidibacter takaii 0 412593 133 2 Aquificaceae family 11 1339 1 64898 0 939 0 85 1 genus Hydrogenobacter thermophilus species 1 85 940 0 77 0 2713 1 genus 77 0 63363 Aquifex aeolicus species 1 122 75905 0 2 genus 0 136094 55 species 1 Thermocrinis albus 75906 0 67 1 species Thermocrinis ruber 1053 1 168657 0 26 Hydrogenobaculum genus 6 5 no rank 2622382 0 1027 species 1 Hydrogenobaculum sp. 3684 0 547143 206 Hydrogenobaculum sp. SN 1 species 206 547146 0 Hydrogenobaculum sp. Y04AAS1 species 1 203 380749 0 547145 0 206 species 1 Hydrogenobaculum sp. SHO 206 0 547144 Hydrogenobaculum sp. HO species 1 1 Desulfurobacteriales order 4 1 515 0 1485951 family 3 Desulfurobacteriaceae 3 0 558314 1 514 477 64159 0 genus 1 477 64160 0 Desulfurobacterium thermolithotrophum species 1 1 genus 34 0 171868 34 228745 0 Thermovibrio ammonificans species 1 phylum 55 203691 0 10166 class 55 26 Spirochaetia 203692 0 10166 1 order 7 Brachyspirales 3 1643686 0 1 2457 143786 0 1 2454 6 family 3 Brachyspiraceae genus 5 21 Brachyspira 29521 0 1 2451 515 84378 0 Brachyspira murdochii 1 species species 1 Brachyspira intermedia 0 84377 596 701 0 52584 Brachyspira pilosicoli species 1 Brachyspira hyodysenteriae species 1 618 0 159 136 0 1 6253 order 39 Spirochaetales 15 17 family 16 Borreliaceae 1643685 0 1 4362 1 1890 0 64895 Borreliella 136 genus 8 0 29518 255 1 species Borreliella afzelii Borreliella bissettii species 1 272 64897 0 species 1 Borreliella burgdorferi 0 139 235 0 29519 428 species 1 Borreliella garinii Borreliella bavariensis species 1 197 664662 0 147 62088 0 Borreliella valaisiana species 1 species 1 Borrelia mayonii 1674146 0 220 138 0 2456 1 8 genus Borrelia 66 0 47466 544 1 species Borrelia miyamotoi 1 species Borrelia parkeri 0 141 220 143 0 220 1 species Borrelia anserina Borrelia recurrentis 1 species 335 44449 0 572 40834 0 Borrelia duttonii species 1 0 142 261 species 1 Borrelia turicatae 238 140 0 Borrelia hermsii 1 species 5 Spirochaetaceae family 21 1 1876 137 0 0 1911556 118 1 genus 55206 0 118 species 1 Sediminispirochaeta smaragdinae 0 157 1105 1 12 genus Treponema 7 Treponema paraluiscuniculi species 1 47 53435 0 1 species Treponema caldarium 215591 0 91 species 1 Treponema putidum 221027 0 137 150829 0 53 species 1 Treponema azotonutricium 0 88058 119 1 species Treponema primitia 158 0 156 1 species Treponema denticola 0 2638727 58 1 no rank 1539298 0 58 1 species Treponema sp. OMZ 838 1 species Treponema pedis 409322 0 187 1 species Treponema succinifaciens 0 167 146 160 0 37 species 1 Treponema pallidum Treponema brennaborense 1 species 67 0 81028 genus 2 166 146 0 0 46355 91 species 1 Spirochaeta africana Spirochaeta thermophila 1 species 75 154 0 0 1616789 283 1 genus 283 1307761 0 Salinispira pacifica species 1 1 199 399320 0 Sphaerochaeta 1 genus 4 species 1 Sphaerochaeta pleomorpha 1131707 0 64 273376 0 80 1 species Sphaerochaeta coccoides 54 1131703 0 Sphaerochaeta globosa species 1 1643688 0 1430 order 8 11 Leptospiraceae 8 family 1430 1 0 170 1 1355 171 0 Leptospira 3 6 genus 1 species Leptospira santarosai 28183 0 118 Leptospira borgpetersenii species 1 236 0 174 164 28452 0 Leptospira alstonii 1 species 172 0 266 species 1 Leptospira biflexa 568 173 0 Leptospira interrogans 1 species 0 338321 64 genus 1 64 0 29510 Turneriella parva 1 species 266 1930617 0 phylum 4 4 Calditrichae class 4 1 266 1962850 0 262 1962852 0 3 order Calditrichaceae 1 family 3 1 262 1962854 0 261 1 187144 0 1 Caldithrix genus 2 species 1 Caldithrix abyssi 0 187145 260 5244 0 200918 39 phylum Thermotogae 12 39 class 5244 1 0 188708 order 27 4 Thermotogales 2419 0 1 3152 2003 1643950 0 family 9 1454 1 2420 0 Thermosipho 6 5 genus 46541 0 350 1 species Thermosipho melanesiensis species 1 Thermosipho africanus 0 2421 413 2 no rank 2676525 0 685 species 1 Thermosipho sp. 1070 1437364 0 353 332 1462747 0 Thermosipho sp. 1063 species 1 genus 4 4 Fervidobacterium 2422 0 549 1 99 2423 0 Fervidobacterium islandicum 1 species species 1 Fervidobacterium pennivorans 93466 0 211 235 0 2424 Fervidobacterium nodosum 1 species 188709 0 1 1145 17 family 2 Thermotogaceae 11 genus Thermotoga 9 0 2335 596 1 4 no rank 0 2631113 198 0 126740 55 species 1 Thermotoga sp. RQ2 55 1157948 0 Thermotoga sp. 2812B 1 species 45 1157947 0 Thermotoga sp. Cell2 species 1 126738 0 43 1 species Thermotoga sp. RQ7 0 2337 47 species 1 Thermotoga neapolitana 1 species Thermotoga naphthophila 0 93930 43 159 0 1508420 Thermotoga profunda species 1 2336 0 64 species 1 Thermotoga maritima 40 0 93929 Thermotoga petrophila species 1 Thermotoga caldifontis 1 species 36 1508419 0 Pseudothermotoga 11 5 genus 1 547 1643951 0 species 1 Pseudothermotoga thermarum 119394 0 171 0 177758 156 1 species Pseudothermotoga lettingae 168 38322 0 Pseudothermotoga elfii 1 species Pseudothermotoga hypogea 1 species 41 57487 0 0 1643947 1 1745 6 order 1 Petrotogales family 5 1744 1643949 0 1 1043 160798 0 Marinitoga 5 genus 3 1 no rank 486 0 2640159 Marinitoga sp. 1137 1 species 486 1545835 0 0 149715 552 species 1 Marinitoga piezophila 1 genus 256 0 28236 256 69499 0 Petrotoga mobilis 1 species 0 1511648 445 1 genus 0 1006576 445 1 species Defluviitoga tunisiensis order 5 Kosmotogales 2 1643946 0 1 335 1 333 1643948 0 Kosmotogaceae 1 4 family 0 651456 232 2 genus 1 species Kosmotoga olearia 651457 0 104 0 1330330 128 1 species Kosmotoga pacifica 100 0 1184396 1 genus Mesotoga prima 1 species 100 1184387 0 8 phylum 200940 0 1198 8 class Thermodesulfobacteria 1 67799 0 1 1198 7 order 4 Thermodesulfobacteriales 0 188710 1 1197 6 family 3 Thermodesulfobacteriaceae 188711 0 1193 1 1 genus 444090 0 172 0 1653476 172 1 species Caldimicrobium thiodismutans 181 241192 0 1 genus 181 171695 0 Thermodesulfatator indicus species 1 1 837 1740 0 2 Thermodesulfobacterium genus 3 1295609 0 622 species 1 Thermodesulfobacterium geofontis 1 species Thermodesulfobacterium commune 1741 0 213 phylum 2 98 200938 0 98 0 118001 class 2 2 order 98 189769 0 2 family 98 189770 0 98 1 0 393029 3 Desulfurispirillum genus 2 species 1 Desulfurispirillum indicum 936456 0 95 clade 3 2498710 0 185 67814 0 185 phylum 3 0 693071 1 185 3 class 3 Caldisericia 693072 0 182 order 2 2 family 2 Caldisericaceae 693073 0 1 182 genus 1 180 0 693074 180 693075 0 Caldisericum exile species 1 17 phylum 0 57723 953 1562566 0 110 1 class genus 1 458032 0 110 110 458033 0 Chloracidobacterium thermophilum species 1 1 843 204432 0 3 Acidobacteriia 16 class Acidobacteriales 4 12 order 1 674 204433 0 204434 0 1 670 family 11 4 Acidobacteriaceae 1 226 0 940557 Granulicella 1 genus 3 126 0 940615 Granulicella tundricola species 1 Granulicella mallensis 1 species 99 0 940614 187 1 392733 0 Terriglobus 2 genus 3 1 species Terriglobus saanensis 870903 0 106 392734 0 79 1 species Terriglobus roseus 0 658061 104 1 genus 2 3 Candidatus Koribacter 101 658062 0 Candidatus Koribacter versatilis 1 species 4 Acidobacterium 2 genus 1 149 33973 0 1 species Acidobacterium capsulatum 0 33075 145 Solibacterales 1 order 3 166 1 0 332160 2 family 165 332161 0 Candidatus Solibacter 1 2 genus 165 1 332162 0 Candidatus Solibacter usitatus species 1 164 332163 0 6995 0 1783257 clade 75 phylum 1 107 256845 0 class 1 1313211 0 107 107 278082 0 order 1 107 1674876 0 1 no rank Victivallales bacterium CCUG 44730 species 1 107 2094242 0 0 203682 2889 phylum 31 6 class 2 Phycisphaerae 666505 0 1 389 1 227 0 666506 Phycisphaerales 5 3 order 666507 0 222 family 2 1 Phycisphaera genus 2 1 222 666508 0 221 547188 0 Phycisphaera mikurensis species 1 2 order 160 2483366 0 160 2483367 0 family 2 160 2483368 0 2 genus Phycisphaerae bacterium ST-PulAB-D4 1 species 85 1941349 0 Phycisphaerae bacterium L21-RPul-D3 1 species 75 0 1940790 2 Planctomycetia class 23 1 1876 203683 0 2691355 0 195 2 order family 2 1914233 0 195 2 genus Gemmata 5 0 113 195 1 0 2622970 190 1 no rank 1 species Gemmata sp. SH-PL17 1630693 0 190 468 0 2691356 6 order 1763524 0 1 468 family 6 3 Isosphaeraceae 0 1763521 186 1 genus Paludisphaera borealis 1 species 186 0 1387353 2 Isosphaera 2 genus 143 1 127 0 128 0 141 1 species Isosphaera pallida 2 genus Singulisphaera 2 466152 0 1 136 134 0 466153 Singulisphaera acidiphila 1 species order 4 2691354 0 389 92 2691358 0 1 family 1676125 0 92 genus 1 1 species Thermogutta terrifontis 1331910 0 92 0 2691357 297 family 3 2 genus 3 Rhodopirellula 265488 0 1 157 Rhodopirellula baltica 1 species 154 265606 0 140 123 0 genus 1 1 species Pirellula staleyi 0 125 140 0 112 1 822 order 10 Planctomycetales 27 Planctomycetaceae 16 family 9 795 1 0 126 1 genus 113 1649480 0 113 0 120 Planctopirus limnophila species 1 1 362 118 0 Planctomyces 3 3 genus 2 no rank 359 2648843 0 155 1632864 0 Planctomyces sp. SH-PL14 1 species 0 1636152 204 species 1 Planctomyces sp. SH-PL62 genus 2 2 Fuerstia 1936111 0 1 178 1891926 0 176 species 1 Fuerstia marisgermanicae 1649490 0 1 126 genus 2 Rubinisphaera 2 0 119 124 species 1 Rubinisphaera brasiliensis 624 0 2517206 2 class 0 1127829 624 1 order 2 2 Candidatus Brocadiales 622 0 1127830 1 family 1 genus 380738 0 622 622 0 174633 Candidatus Kuenenia stuttgartiensis species 1 186 134625 0 phylum 2 1921781 0 186 class 2 1 Kiritimatiellales 2 order 1 186 1921782 0 1921783 0 185 family 1 1921784 0 185 genus 1 1307763 0 185 species 1 Kiritimatiella glycovorans 1954 74201 0 phylum 21 class 2 303 0 1955630 order 2 717963 0 303 303 717964 0 2 family 303 511745 0 2 genus Methylacidiphilum infernorum 1 species 94 0 511746 Methylacidiphilum fumariolicum 1 species 209 0 591154 2 class 134549 0 71 0 134550 71 1 2 genus 3 Candidatus Xiphinematobacter no rank 1 68 2648876 0 Candidatus Xiphinematobacter sp. Idaho Grape 1 species 68 1704307 0 8 Opitutae 11 class 1 1132 414999 0 order 6 Opitutales 3 415000 0 1 493 Opitutaceae 3 5 family 1 490 0 134623 1 no rank 175 0 278955 Opitutaceae bacterium TAV5 species 1 175 794903 0 genus 1 1961799 0 162 Lacunisphaera limnophila 1 species 162 0 1838286 2 genus Opitutus 2 0 178440 1 150 species 1 Opitutus terrae 107709 0 148 Puniceicoccales 2 4 order 631 1 0 415001 family 3 Puniceicoccaceae 2 0 415002 1 629 2 genus 3 Coraliomargarita 442430 0 1 627 species 1 Coraliomargarita akajimensis 395922 0 624 203494 0 164 class 4 1 164 48461 0 1 Verrucomicrobiales order 4 0 1647988 163 family 3 Akkermansia 2 genus 3 163 1 239934 0 94 1679444 0 Akkermansia glycaniphila 1 species Akkermansia muciniphila species 1 67 0 239935 284 417295 0 no rank 2 2026799 0 159 species 1 Verrucomicrobia bacterium Verrucomicrobia bacterium IMCC26134 1 species 125 1637999 0 20 phylum 1859 204428 0 10 Chlamydiia 20 class 1 1859 0 204429 2 Chlamydiales order 14 1 1328 51291 0 1 1326 0 809 Chlamydiaceae 1 13 family 0 1113537 1325 no rank 12 1325 1 0 810 Chlamydia 19 genus 12 813 0 111 1 species Chlamydia trachomatis 83555 0 104 1 species Chlamydia abortus 1 species Chlamydia pecorum 85991 0 147 species 1 Chlamydia avium 1457141 0 127 1 species Chlamydia gallinacea 1457153 0 101 81 0 83560 Chlamydia muridarum species 1 Chlamydia felis species 1 116 0 83556 180 0 83554 Chlamydia psittaci 1 species 84 0 83559 Chlamydia suis 1 species 1 species Chlamydia pneumoniae 0 83558 143 83557 0 112 species 1 Chlamydia caviae 1 Parachlamydiales order 5 1 521 0 1963360 0 92712 128 1 family 1 genus 34093 0 128 128 83561 0 Simkania negevensis 1 species family 1 92714 0 96 96 71666 0 genus 1 Waddlia chondrophila 1 species 96 71667 0 2 family 92713 0 296 1 genus 116 282132 0 116 389348 0 Candidatus Protochlamydia naegleriophila 1 species 0 83551 180 1 genus Parachlamydia acanthamoebae 1 species 180 0 83552 clade 355 1783270 0 113451 224 65842 0 phylum 1 224 0 204430 class 1 1 order 224 218872 0 1 family 224 204431 0 1 genus 224 0 832 224 0 833 Fibrobacter succinogenes 1 species clade 345 0 68336 112417 21 phylum 1605 0 1090 1 1605 191410 0 2 Chlorobia class 21 16 Chlorobiales 20 order 1 1603 0 191411 1587 1 191412 0 Chlorobiaceae 18 family 19 22 Prosthecochloris 5 genus 1 314 1101 0 no rank 3 2632826 0 218 Prosthecochloris sp. GSB1 1 species 70 0 281093 species 1 Prosthecochloris sp. HL-130-GSB 1974213 0 79 1 species Prosthecochloris sp. CIB 2401 1868325 0 69 Prosthecochloris aestuarii species 1 74 1102 0 874 274493 0 8 no rank 1091 0 1 706 genus 5 Chlorobium 16 1092 0 137 species 1 Chlorobium limicola 127 337090 0 Chlorobium chlorochromatii 1 species 0 1096 349 species 1 Chlorobium phaeobacteroides 77 0 1094 Chlorobium phaeovibrioides species 1 1099 0 1 168 3 genus 4 Pelodictyon 1100 0 63 1 species Pelodictyon luteolum 101 34090 0 Pelodictyon phaeoclathratiforme species 1 0 256319 1 208 4 genus Chlorobaculum 19 0 1097 51 species 1 Chlorobaculum tepidum Chlorobaculum parvum 1 species 62 274539 0 76 0 274537 Chlorobaculum limnaeum species 1 1 genus 0 100715 173 100716 0 173 1 species Chloroherpeton thalassium 1134404 0 899 6 phylum 795747 0 1 899 6 class Ignavibacteria 6 0 795748 1 893 order 5 2 Ignavibacteriales 1 712 0 795749 Ignavibacteriaceae 3 3 family 709 1 795750 0 Ignavibacterium 6 genus 2 Ignavibacterium album 1 species 703 0 591197 1334117 0 179 1 family 1134403 0 179 1 genus Melioribacter roseus species 1 179 1134405 0 0 976 1 109913 phylum 318 Bacteroidetes 10 1100069 0 1 465 order 6 4 Bacteroidetes Order II. Incertae sedis 1 461 0 563843 Rhodothermaceae 2 5 family 146918 0 144 genus 1 146919 0 144 species 1 Salinibacter ruber 174 1196022 0 no rank 1 1779382 0 174 species 1 Rhodothermaceae bacterium RA 2 genus 3 Rhodothermus 29548 0 1 141 138 0 29549 Rhodothermus marinus 1 species 1937959 0 632 6 class 2 Saprospirales 6 order 1 632 1936988 0 1937961 0 1 352 3 family 1 Haliscomenobacteraceae 2349 0 1 351 2 genus 3 Haliscomenobacter 2350 0 348 1 species Haliscomenobacter hydrossis family 2 0 89374 278 1007 0 1 278 genus 2 1 Saprospira 1008 0 277 species 1 Saprospira grandis Bacteroidia 29 59 class 1 7394 200643 0 49 order 24 Bacteroidales 171549 0 1 5644 family 2 69 2005519 0 0 397864 69 1 genus 2 1 Barnesiella 0 397865 68 1 species Barnesiella viscericola 1 no rank 0 185291 112 species 1 Bacteroidales bacterium CF 1400053 0 112 223 0 171551 3 family 3 genus Porphyromonas 4 0 836 1 223 0 28123 74 1 species Porphyromonas asaccharolytica species 1 Porphyromonas gingivalis 837 0 145 no rank 5 1132 0 333046 genus 3 516 909656 0 Bacteroides vulgatus species 1 135 821 0 376805 0 202 species 1 Bacteroides salanitronis 357276 0 179 species 1 Bacteroides dorei 2 genus Candidatus Azobacteroides 1 0 511434 616 1 615 0 511435 Candidatus Azobacteroides pseudotrichonymphae 1 species 0 1853231 1 174 family 2 1 Odoribacteraceae 0 283168 173 genus 1 species 1 Odoribacter splanchnicus 0 28118 173 1106 0 171552 family 10 genus 10 6 Prevotella 0 838 1106 1 species 1 Prevotella intermedia 0 28131 336 1 species Prevotella ruminicola 839 0 97 1 no rank 180 2638335 0 1 species Prevotella sp. oral taxon 299 0 652716 180 66 52227 0 Prevotella dentalis 1 species 589436 0 91 species 1 Prevotella fusca 1177574 0 94 species 1 Prevotella jejuni 111 0 28132 Prevotella melaninogenica species 1 51 28129 0 Prevotella denticola species 1 1 species Prevotella enoeca 0 76123 74 2005525 0 1 477 family 6 2 Tannerellaceae 2 genus 211 195950 0 0 28112 92 species 1 Tannerella forsythia 1 no rank 119 0 2620507 119 0 712710 Tannerella sp. oral taxon HOT-286 1 species genus 3 Parabacteroides 4 375288 0 264 1 species 1 Parabacteroides distasonis 0 823 144 1 no rank 0 2649774 116 116 0 2025876 Parabacteroides sp. CT06 1 species family 5 0 2005520 480 1784836 0 276 1 2 genus 1 Fermentimonas species 1 Fermentimonas caenicola 1562970 0 275 genus 1 307628 0 79 1642646 0 79 1 species Petrimonas mucosa 2 genus 1 Proteiniphilum 294702 0 1 125 Proteiniphilum saccharofermentans species 1 124 0 1642647 0 815 1390 family 10 genus 10 10 Bacteroides 816 0 1390 1 0 817 292 1 species Bacteroides fragilis 0 47678 147 species 1 Bacteroides caccae 1 species Bacteroides cellulosilyticus 0 246787 167 Bacteroides helcogenes species 1 93 0 290053 28116 0 177 1 species Bacteroides ovatus 218 818 0 Bacteroides thetaiotaomicron 1 species 28113 0 111 species 1 Bacteroides heparinolyticus 90 0 1796613 Bacteroides caecimuris species 1 1 species Bacteroides zoogleoformans 28119 0 85 2005523 0 311 family 1 genus 1 311 0 346096 311 0 185300 Paludibacter propionicigenes 1 species family 3 146 0 171550 81 1 1611681 0 Mucinivorans 1 genus 2 0 1433126 80 1 species Mucinivorans hirudinis 0 239759 65 genus 1 species 1 Alistipes finegoldii 0 214856 65 9 order 1721 0 1970189 2 family 339 0 558415 2 Alkalitalea genus 2 339 1 0 1193324 1 species Alkalitalea saponilacus 0 889453 337 1573805 0 1 600 family 2 3 Marinifilaceae 1 genus 597 2060722 0 597 1717717 0 Marinifilaceae bacterium SPP2 species 1 1970190 0 388 family 2 Salinivirga 4 genus 2 1 388 0 1970191 Salinivirga cyanobacteriivorans 1 species 384 0 1307839 family 3 Prolixibacteraceae 1 0 1471398 1 394 1471399 0 1 393 2 genus 6 Draconibacterium 1168034 0 387 species 1 Draconibacterium orientale 13 Cytophagia 61 class 1 12183 768503 0 1 12170 0 768507 47 Cytophagales 60 order 1853234 0 1 485 family 3 Persicobacteraceae 1 1 484 0 59740 3 Persicobacter genus 2 1 no rank 0 2664020 481 Persicobacter sp. JZB09 species 1 481 1085624 0 1 1017 1937968 0 4 Bernardetiaceae family 3 Bernardetia 9 2 genus 1013 1 1937972 0 1004 999 0 Bernardetia litoralis 1 species 0 563798 1 2246 10 family 6 Cyclobacteriaceae 6 Cyclobacterium genus 3 1 989 68288 0 1 species Cyclobacterium amurskyense 320787 0 501 482 0 104 Cyclobacterium marinum 1 species 9 Echinicola 2 genus 250 1 390846 0 species 1 Echinicola vietnamensis 390884 0 241 Belliella 12 genus 2 638 1 0 232244 1 species Belliella baltica 232259 0 626 1 363 246875 0 5 Algoriphagus 2 genus species 1 Algoriphagus sp. M8-2 0 1727163 358 1 2491 0 89373 4 Cytophagaceae family 17 133 1 0 861914 1 Fibrella 2 genus 2620963 0 132 1 no rank 0 1834519 132 1 species Fibrella sp. ES10-3-2-2 218 1 120831 0 Dyadobacter 3 genus 2 Dyadobacter fermentans species 1 215 94254 0 8 Cytophaga 2 genus 438 1 978 0 430 0 985 Cytophaga hutchinsonii 1 species 7 Spirosoma genus 6 858 1 107 0 Spirosoma radiotolerans 1 species 206 0 1379870 0 564064 107 1 species Spirosoma rigui 183 0 1211326 Spirosoma aerolatum 1 species Spirosoma montaniterrae 1 species 162 0 1178516 species 1 Spirosoma sp. HA7 0 2057025 193 Runella 3 genus 2 526 1 105 0 species 1 Runella slithyformis 0 106 523 0 319458 1 314 2 genus 8 Leadbetterella Leadbetterella byssophila 1 species 306 0 316068 5 Hymenobacteraceae family 15 1 2051 1853232 0 genus 4 Rufibacter 11 0 1379908 1 566 0 2639626 318 no rank 2 178 0 1379910 Rufibacter sp. DG31D species 1 1379909 0 140 1 species Rufibacter sp. DG15C species 1 Rufibacter tibetensis 0 512763 237 2 genus 347 0 323449 0 400092 215 species 1 Pontibacter korlensis Pontibacter akesuensis species 1 132 388950 0 1 1133 0 89966 Hymenobacter 27 8 genus Hymenobacter swuensis 1 species 134 1446467 0 species 1 Hymenobacter sedentarius 0 1411621 153 819 0 2615202 no rank 5 Hymenobacter sp. APR13 species 1 172 1356852 0 210 1484118 0 Hymenobacter sp. PAMC 26628 1 species species 1 Hymenobacter sp. DG25A 0 1385663 99 Hymenobacter sp. PAMC 26554 species 1 237 1484116 0 Hymenobacter sp. DG25B 1 species 101 1385664 0 1 2621 200667 0 5 Flammeovirgaceae 4 family 2 genus 4 Flammeovirga 59739 0 1 997 2637820 0 993 no rank 1 993 1191459 0 Flammeovirga sp. MY04 1 species no rank 1 0 340671 1619 0 1257021 1619 1 species Flammeovirgaceae bacterium 311 798 0 2762301 2 family 869806 0 798 1 genus 2 9 Marivirga Marivirga tractuosa species 1 789 0 1006 1 414 0 1501348 Amoebophilaceae 5 family 5 genus 2 Candidatus Amoebophilus 2 281119 0 1 271 0 281120 269 1 species Candidatus Amoebophilus asiaticus 138 1 0 273135 2 Candidatus Cardinium genus 2 no rank 1 136 0 2641185 Cardinium endosymbiont of Encarsia pergandiella species 1 136 0 249402 1 1983 0 1853228 Chitinophagia 3 class 16 Chitinophagales 6 15 order 1 1980 1853229 0 family 14 12 Chitinophagaceae 563835 0 1 1974 genus 2 1 Niastella 354354 0 383 1 species 1 Niastella koreensis 354356 0 382 1 genus 184 649460 0 184 0 477680 Filimonas lacunae 1 species 1 341 379899 0 4 Niabella 3 genus species 1 Niabella ginsenosidivorans 0 1176587 196 Niabella soli species 1 141 0 446683 2 genus 1 Arachidicoccus 0 1769012 245 1 1 no rank 2636138 0 244 Arachidicoccus sp. BS20 species 1 244 0 1850526 398041 0 1 370 2 genus Flavisolibacter 3 Flavisolibacter tropicus 1 species 367 1492898 0 Chitinophaga 1 3 genus 439 1 79328 0 1 species Chitinophaga pinensis 0 79329 210 Chitinophagaceae bacterium 13 species 1 228 2029983 0 1 6459 117747 0 Sphingobacteriia 7 class 24 order 23 8 Sphingobacteriales 0 200666 1 6452 1 6444 84566 0 Sphingobacteriaceae 15 22 family 1649482 0 1 503 2 genus Pseudopedobacter 2 Pseudopedobacter saltans species 1 501 0 151895 2149 1 0 84567 Pedobacter 25 6 genus no rank 1 410 0 2628915 410 0 1727164 Pedobacter sp. PACM 27299 1 species Pedobacter cryoconitis 1 species 484 188932 0 Pedobacter ginsengisoli 1 species 499 0 363852 Pedobacter steynii 1 species 374 430522 0 Pedobacter heparinus species 1 357 984 0 0 28453 1 1615 genus 6 22 Sphingobacterium 1305 0 2609468 no rank 4 279 1933220 0 Sphingobacterium sp. B29 1 species Sphingobacterium sp. G1-14 1 species 320 0 2003121 0 1538644 399 species 1 Sphingobacterium sp. ML3W 743722 0 307 1 species Sphingobacterium sp. 21 1010 0 288 species 1 Sphingobacterium mizutaii 0 84568 754 1 no rank 1986952 0 754 1 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 423349 0 1 939 genus 4 Mucilaginibacter 7 305 0 1234841 Mucilaginibacter sp. BJC16-A31 species 1 Mucilaginibacter gotjawali species 1 398 1550579 0 229 0 2617802 1 no rank 1300914 0 229 1 species Mucilaginibacter sp. PAMC 26640 469 1 929509 0 Solitalea 5 genus 2 1 species Solitalea canadensis 0 995 464 class 145 44 Flavobacteriia 0 117743 1 80787 144 order 88 Flavobacteriales 0 200644 1 80743 family 20 2762318 0 8862 10 no rank 4560 2782232 0 genus 9 16 Chryseobacterium 59732 0 1 4364 Chryseobacterium piperi species 1 557 0 558152 859 0 253 Chryseobacterium indologenes species 1 816 1685010 0 Chryseobacterium glaciei 1 species species 1 Chryseobacterium gallinarum 0 1324352 370 no rank 3 1584 2593645 0 0 2015076 610 1 species Chryseobacterium sp. T16E-39 Chryseobacterium sp. StRB126 1 species 506 878220 0 468 1721091 0 Chryseobacterium sp. IHB B 17019 species 1 species 1 Chryseobacterium camelliae 1265445 0 162 1 genus 196 2782228 0 Chryseobacterium taklimakanense 1 species 196 0 536441 297 1 0 28250 Ornithobacterium 1 genus 2 species 1 Ornithobacterium rhinotracheale 0 28251 296 6 genus Elizabethkingia 48 308865 0 2874 1 1 species Elizabethkingia miricola 172045 0 623 357 0 1756150 Elizabethkingia genomosp. 4 1 species 414 0 238 Elizabethkingia meningoseptica 1 species 985 0 1117645 Elizabethkingia anophelis 1 species Elizabethkingia genomosp. 3 species 1 447 1756149 0 1 genus 364 1013 0 Weeksella virosa 1 species 364 1014 0 1 genus 0 34084 767 species 1 Riemerella anatipestifer 0 34085 767 10 family Blattabacteriaceae 5 39782 0 1 3306 3301 1 34098 0 35 Blattabacterium genus 9 species 1 Blattabacterium punctulatus 0 164514 436 6 no rank 0 2647581 2375 441 0 367488 Blattabacterium sp. (Periplaneta americana) 1 species 1316444 0 396 1 species Blattabacterium sp. (Nauphoeta cinerea) species 1 Blattabacterium sp. (Blatta orientalis) 0 367806 343 1 species Blattabacterium sp. (Mastotermes darwiniensis) 39768 0 337 Blattabacterium sp. (Blaberus giganteus) species 1 432 1186051 0 Blattabacterium sp. (Blattella germanica) species 1 426 0 624186 Blattabacterium cuenoti 1 species 455 0 1653831 family 2 1333713 0 467 0 267986 1 467 genus 2 Owenweeksia 22 Owenweeksia hongkongensis 1 species 445 0 253245 family 2 0 1755828 450 16 Ichthyobacterium genus 2 450 1 0 1755829 0 242600 434 species 1 Ichthyobacterium seriolicida 1853230 0 514 2 family 6 Fluviicola genus 2 514 1 0 332102 1 species Fluviicola taffensis 0 191579 508 103 family 298 Flavobacteriaceae 0 49546 1 66169 1 4079 1016 0 31 Capnocytophaga genus 15 Capnocytophaga canimorsus species 1 529 28188 0 Capnocytophaga cynodegmi species 1 403 0 28189 327575 0 236 species 1 Capnocytophaga leadbetteri species 1 Capnocytophaga gingivalis 1017 0 232 no rank 6 2640652 0 1516 species 1 Capnocytophaga sp. oral taxon 864 0 1316593 171 1 species Capnocytophaga sp. oral taxon 323 1705617 0 168 314 1316596 0 Capnocytophaga sp. oral taxon 878 1 species 1 species Capnocytophaga sp. H2931 1945657 0 317 Capnocytophaga sp. H4358 1 species 305 0 1945658 241 0 209053 Capnocytophaga sp. ChDC OS43 species 1 species 1 Capnocytophaga sputigena 0 1019 473 313 0 1848904 Capnocytophaga stomatis species 1 Capnocytophaga ochracea 1 species 203 0 1018 0 45243 143 species 1 Capnocytophaga haemolytica 1 genus 178469 0 626 0 616991 626 1 species Arenibacter algicola 0 52959 1 7182 6 genus 56 Polaribacter Polaribacter vadi species 1 1624 1774273 0 no rank 3 196858 0 3896 species 1 Polaribacter sp. ALD11 2058137 0 1070 0 313598 1490 1 species Polaribacter sp. MED152 species 1 Polaribacter sp. BM10 1529069 0 1336 1 species Polaribacter reichenbachii 996801 0 1606 11 Cellulophaga 4 genus 1 3571 104264 0 species 1 Cellulophaga algicola 0 59600 1106 979 0 1265 species 1 Cellulophaga lytica 0 76594 1189 1 species Cellulophaga baltica genus 1 83612 0 855 Psychroflexus torquis species 1 855 0 57029 0 153265 1 603 2 genus 1 Aequorivita species 1 Aequorivita sublithincola 0 101385 602 2 Olleya genus 2 1053 1 336276 0 no rank 1 1051 0 2615019 1 species Olleya sp. Bg11-27 2058135 0 1051 1 1527 0 358023 6 Lutibacter 2 genus 1521 1622118 0 Lutibacter profundi 1 species 1 genus 925 0 1209327 Flavivirga eckloniae species 1 925 0 1803846 143222 0 641 1 2 genus 1 Salegentibacter 1 no rank 0 2633436 640 640 1729720 0 Salegentibacter sp. T436 species 1 0 111500 1 704 3 genus Muricauda 5 111501 0 451 species 1 Muricauda ruestringensis Muricauda lutaonensis 1 species 248 0 516051 no rank 2 0 61432 1200 0 1150389 1003 species 1 Flavobacteriaceae bacterium UJ101 197 531844 0 Flavobacteriaceae bacterium 3519-10 species 1 2700084 0 1621 genus 1 Lutibacter sp. LPB0138 1 species 1621 0 1850246 0 1176327 381 genus 1 no rank 1 381 2636237 0 0 2094025 381 1 species Aureitalea sp. RR4-38 252306 0 187 genus 1 0 252307 187 1 species Robiginitalea biformata genus 1 774 393005 0 Tamlana sp. UJ94 1 species 774 2069432 0 Flavobacterium 19 genus 9 1 7665 237 0 724 1492737 0 Flavobacterium gilvum species 1 species 1 Flavobacterium columnare 996 0 1442 Flavobacterium psychrophilum species 1 729 0 96345 723 55197 0 Flavobacterium branchiophilum species 1 1859 0 986 Flavobacterium johnsoniae 1 species Flavobacterium crassostreae 1 species 523 1763534 0 637 1306519 0 Flavobacterium commune species 1 0 312277 1009 species 1 Flavobacterium indicum 1 genus 987 417127 0 0 398743 987 species 1 Zunongwangia profunda 1 3851 0 291183 Lacinutrix 34 genus 4 2647285 0 2522 no rank 2 1298 0 983544 Lacinutrix sp. 5H-3-7-4 1 species Lacinutrix sp. Bg11-31 species 1 1224 2057808 0 1 species Lacinutrix venerupis 1486034 0 1295 genus 5 56 Myroides 0 76831 1998 1 0 2642485 942 no rank 2 species 1 Myroides sp. ZB35 1458492 0 461 1583100 0 481 1 species Myroides sp. A21 species 1 Myroides odoratimimus 76832 0 506 species 1 Myroides profundi 0 480520 494 1 3007 0 252356 Maribacter 39 genus 5 Maribacter cobaltidurans species 1 474 0 1178778 2615042 0 2494 no rank 3 Maribacter sp. HTCC2170 1 species 711 0 313603 Maribacter sp. 1_2014MBL_MicDiv 1 species 933 0 1644130 1 species Maribacter sp. T28 1836467 0 850 0 292691 1927 1 5 genus Gramella 6 343 0 1486245 Gramella flava species 1 1 species Gramella sp. SH35 2126553 0 478 species 1 Gramella forsetii 0 411153 631 1913577 0 469 1 species Gramella sp. LPB0144 353 112040 0 genus 1 1 species Zobellia galactanivorans 63186 0 353 genus 1 1129 1518147 0 species 1 Wenyingzhuangia fucanilytica 0 1790137 1129 4 genus Dokdonia 21 326319 0 1 1898 2 no rank 0 2615033 1232 Dokdonia sp. 4H-3-7-5 species 1 666 0 983548 1 species Dokdonia sp. MED134 0 313590 566 Dokdonia donghaensis 1 species 645 0 326320 1 genus 1321 0 1649495 1 no rank 2622645 0 1321 1321 0 1936081 Seonamhaeicola sp. S2-3 species 1 52 Nonlabens 5 genus 1 2800 363408 0 0 319236 730 1 species Nonlabens sediminis 0 2615035 1317 2 no rank 2058134 0 627 species 1 Nonlabens sp. MB-3u-79 1 species Nonlabens sp. MIC269 1476901 0 690 1 species Nonlabens dokdonensis 328515 0 701 1 genus 0 261827 1250 Algibacter alginicilyticus 1 species 1250 0 1736674 15 Tenacibaculum genus 5 1 4914 104267 0 919 669041 0 Tenacibaculum dicentrarchi species 1 0 107401 1069 1 species Tenacibaculum maritimum 1850252 0 1325 species 1 Tenacibaculum todarodis species 1 Tenacibaculum jejuense 0 584609 1586 390 389486 0 genus 1 0 2648869 390 no rank 1 species 1 Sediminicola sp. YIK13 1453352 0 390 1 2472 286104 0 Winogradskyella 4 genus 3 2468 0 2615021 2 no rank 1936080 0 1088 1 species Winogradskyella sp. J14-2 1380 0 754409 Winogradskyella sp. PG-2 species 1 3 genus Formosa 4 225842 0 1 1948 2 no rank 1944 2644710 0 Formosa sp. Hel1_33_131 species 1 759 1336794 0 1336795 0 1185 1 species Formosa sp. Hel3_A1_48 216431 0 958 1 genus species 1 Croceibacter atlanticus 0 313588 958 1 1074 0 1204360 Siansivirga 2 genus 2 Siansivirga zeaxanthinifaciens species 1 1072 762954 0 no rank 3 884 313602 0 1 genus 151 1940138 0 151 0 1415657 Candidatus Walczuchella monophlebidarum 1 species 1 Candidatus Sulcia genus 2 733 1 336809 0 0 336810 732 1 species Candidatus Sulcia muelleri 3 0 246874 Cryomorphaceae family 1 phylum 8 142182 0 571 219685 0 1 571 class 8 4 Gemmatimonadetes 7 order 7 Gemmatimonadales 0 219686 1 567 Gemmatimonadaceae 5 family 6 560 1 219687 0 2 genus Gemmatirosa 1 1706036 0 1 311 310 0 861299 Gemmatirosa kalamazoonesis 1 species 1 244 173479 0 Gemmatimonas 5 3 genus 140 0 1379270 Gemmatimonas phototrophica 1 species 0 173480 99 species 1 Gemmatimonas aurantiaca 239 456828 0 phylum 1 1 genus 239 456826 0 0 456827 239 1 species Candidatus Cloacimonas acidaminovorans 9 phylum 508458 0 364 2 Synergistia 9 class 364 1 0 649775 8 order 2 Synergistales 649776 0 1 362 family 7 2 Synergistaceae 649777 0 360 1 60 0 81461 1 genus Thermanaerovibrio acidaminovorans species 1 60 81462 0 79 0 336260 1 genus 79 0 336261 Thermovirga lienii species 1 2 genus Aminobacterium 1 81466 0 1 94 Aminobacterium colombiense 1 species 93 0 81468 1 genus 61 0 508459 Cloacibacillus porcorum species 1 61 0 1197717 64 49894 0 genus 1 Acetomicrobium mobile 1 species 64 0 97477 1058 40117 0 phylum 13 13 class 1 Nitrospira 0 203693 1058 1 0 189778 1 1057 order 12 Nitrospirales 10 0 189779 1047 1 family 11 Nitrospiraceae 4 0 1234 263 1 5 genus Nitrospira 4 59 1715989 0 Candidatus Nitrospira inopinata species 1 0 42253 85 species 1 Nitrospira moscoviensis 0 330214 66 1 species Nitrospira defluvii 49 1325564 0 Nitrospira japonica 1 species 1 208 179 0 Leptospirillum 2 4 genus 66 0 261386 species group 1 1 species Leptospirillum ferriphilum 178606 0 66 0 261385 64 species group 1 64 0 1660083 Leptospirillum sp. Group II 'CF-1' 1 species 0 655606 76 species group 1 1 species Leptospirillum ferrooxidans 0 180 76 1 genus 28261 0 572 572 28262 0 Thermodesulfovibrio yellowstonii 1 species