members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 41603 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 26580626 31 4769 289 superkingdom 2157 0 76945 clade 1 0 1783276 160 1 phylum 0 1801631 160 1 genus 0 2490204 160 1 Candidatus Micrarchaeota archaeon Mia14 species 1920749 0 160 Euryarchaeota phylum 1 234 8 0 28890 69459 12 0 183968 6169 class Thermococci 41 1 0 6157 2258 22 1 40 order Thermococcales 39 1 Thermococcaceae family 0 6135 2259 14 2 0 956 2260 genus Pyrococcus 1 8 1 species Pyrococcus horikoshii 0 123 53953 0 2629106 223 2 no rank Pyrococcus sp. ST04 species 1 141 0 1183377 342949 0 82 1 Pyrococcus sp. NA2 species 29292 0 142 1 species Pyrococcus abyssi 0 103 1008460 species Pyrococcus yayanosii 1 0 207 2261 species Pyrococcus furiosus 1 0 1609559 156 species Pyrococcus kukulkanii 1 29 1 genus Thermococcus 2263 0 5031 34 2265 0 187 Thermococcus litoralis species 1 1 Thermococcus radiotolerans species 0 187880 171 Thermococcus peptonophilus species 1 0 165 53952 6 no rank 1211 0 2627626 0 2016361 138 1 Thermococcus sp. EXT12c species 1 species Thermococcus sp. 5-4 0 2008440 187 0 122420 75 1 Thermococcus sp. P6 species 1 Thermococcus sp. 4557 species 0 1042877 251 246969 0 260 1 species Thermococcus sp. AM4 0 300 1674923 1 species Thermococcus sp. 2319x1 1 Thermococcus pacificus species 135 0 71998 1 species Thermococcus kodakarensis 0 150 311400 0 187878 84 1 Thermococcus gammatolerans species Thermococcus celer species 1 0 165 2264 169 0 195522 species Thermococcus nautili 1 0 1712654 140 1 Thermococcus piezophilus species 1 species Thermococcus guaymasensis 0 110164 214 0 440 55802 1 species Thermococcus barophilus 0 72803 137 1 Thermococcus siculi species 54077 0 196 1 species Thermococcus barossii Thermococcus gorgonarius species 1 0 71997 128 Thermococcus paralvinellae species 1 0 582419 160 Thermococcus onnurineus species 1 0 152 342948 Thermococcus eurythermalis species 1 0 127 1505907 1 Thermococcus chitonophagus species 144 0 54262 0 277988 204 Thermococcus thioreducens species 1 1 species Thermococcus cleftensis 0 163003 186 1 species Thermococcus profundus 0 49899 184 0 172049 148 1 species Thermococcus sibiricus genus 1 134 0 83867 0 134 971279 1 Palaeococcus pacificus species clade 19 0 2283796 4015 1 17 class Thermoplasmata 0 183967 3755 7 7 0 2301 2085 order Thermoplasmatales 1 9 0 507 90142 family 2 genus 2 0 74968 507 0 244 74969 species Ferroplasma acidiphilum 1 0 97393 263 1 species Ferroplasma acidarmanus 1 family 0 46630 392 1 genus 0 392 46631 1 species Picrophilus torridus 0 392 82076 0 46659 267 2 family genus 2 0 267 2302 0 138 50339 1 species Thermoplasma volcanium species Thermoplasma acidophilum 1 0 2303 129 no rank 1 0 714 1919231 1 species Thermoplasmatales archaeon BRNA1 0 1054217 714 2 family 0 198 1747776 genus Cuniculiplasma 2 1 2 1747777 0 198 species Cuniculiplasma divulgatum 1 1673428 0 196 0 1234666 694 1 no rank 1 species methanogenic archaeon ISO4-H5 0 1495144 694 Methanomassiliicoccales order 1 6 1 969 0 1235850 family 2 454 0 2517203 0 1291539 454 13 1 2 Candidatus Methanomethylophilus genus 1 Candidatus Methanomethylophilus alvus species 441 0 1291540 family Methanomassiliicoccaceae 1 3 4 0 1577788 514 0 1080709 378 1 genus 1 species Candidatus Methanomassiliicoccus intestinalis 0 1406512 378 0 132 1607807 1 genus 1 species Candidatus Methanoplasma termitum 0 1577791 132 clade 2 0 260 1803510 0 379546 260 2 genus 1 no rank 0 121 2633939 1 species Aciduliprofundum sp. MAR08-339 0 121 673860 1 Aciduliprofundum boonei species 0 379547 139 0 2283794 22005 44 clade 0 8894 183939 25 1 17 Methanococci class 0 2182 8869 3 16 1 order Methanococcales 0 196117 2897 family 9 5 0 2571 196118 genus Methanocaldococcus 7 1 0 283 2190 Methanocaldococcus jannaschii species 1 1 species Methanocaldococcus fervens 0 83171 379 Methanocaldococcus bathoardescens species 1 0 1301915 506 1 Methanocaldococcus vulcanius species 0 780 73913 422 0 2641196 1 no rank 1 species Methanocaldococcus sp. FS406-22 0 644281 422 1 Methanocaldococcus infernus species 196 0 67760 0 196119 326 5 2 1 genus Methanotorris 1 species Methanotorris igneus 0 321 2189 6 family 0 2183 5969 0 2184 4787 4 genus species Methanococcus voltae 1 357 0 2188 1 species Methanococcus vannielii 0 775 2187 species Methanococcus maripaludis 1 0 2499 39152 1 Methanococcus aeolicus species 0 1156 42879 Methanothermococcus genus 2 1 5 0 155862 1182 Methanothermococcus okinawensis species 1 0 155863 1177 0 183925 13111 2 1 27 class Methanobacteria 1 26 Methanobacteriales order 0 2158 13109 10 22 1 Methanobacteriaceae family 0 12696 2159 2 genus 1 2316 0 994 994 0 2317 1 species Methanosphaera stadtmanae 3 0 7439 2172 Methanobrevibacter genus 1 7 2 no rank 0 2638681 1834 1 Methanobrevibacter sp. YE315 species 1609968 0 974 224719 0 860 species Methanobrevibacter sp. AbM4 1 0 2173 1868 1 Methanobrevibacter smithii species 1 species Methanobrevibacter millerae 0 1620 230361 0 83816 698 Methanobrevibacter ruminantium species 1 0 1416 294671 species Methanobrevibacter olleyae 1 0 2160 3132 3 8 1 Methanobacterium genus 0 509 877455 species Methanobacterium lacus 1 0 830 2627676 no rank 2 species Methanobacterium sp. MB1 1 0 1379702 236 1 Methanobacterium sp. MZ-A1 species 0 1911685 594 1 Methanobacterium subterraneum species 59277 0 279 1 Methanobacterium formicicum species 0 2162 477 species Methanobacterium congolense 1 0 545 118062 0 868131 489 1 Methanobacterium paludis species 3 0 145260 1129 Methanothermobacter genus 1 5 Methanothermobacter wolfeii species 1 703 0 145261 0 137 145263 1 species Methanothermobacter marburgensis no rank 1 0 2631116 146 0 146 866790 1 Methanothermobacter sp. CaT2 species Methanothermobacter thermautotrophicus species 1 0 140 145262 2 0 403 2178 Methanothermaceae family 1 3 0 401 2179 1 1 2 Methanothermus genus 1 Methanothermus fervidus species 0 2180 400 35725 0 2290931 clade 116 class Halobacteria 1 66 91 0 183963 18345 order Halobacteriales 27 1 64 6832 0 2235 0 2236 2246 4 10 1 Halobacteriaceae family 13 0 1656823 244 genus Halanaeroarchaeum 2 1 1 species Halanaeroarchaeum sulfurireducens 0 1604004 231 0 310 1980514 1 genus 1 species Halodesulfurarchaeum formicicum 0 1873524 310 8 332246 0 344 genus Halalkalicoccus 1 2 0 413810 336 1 Halalkalicoccus jeotgali species 1344 0 2239 29 1 4 genus Halobacterium 1 species Halobacterium hubeiense 0 595 1407499 1 no rank 0 454 2668073 Halobacterium sp. DL1 species 1 0 454 751944 1 Halobacterium salinarum species 2242 0 266 73 1963268 0 4522 family Haloarculaceae 1 16 Natronomonas genus 3 1 14 0 63743 615 1 Natronomonas pharaonis species 0 2257 367 species Natronomonas moolapensis 1 0 416273 234 146825 0 806 10 3 1 Halorhabdus genus 0 146826 452 Halorhabdus utahensis species 1 Halorhabdus tiamatea species 1 0 344 430914 genus Haloarcula 5 1 50 0 2001 2237 Haloarcula hispanica species 1 0 518 51589 0 2238 515 1 species Haloarcula marismortui 0 1932004 410 Haloarcula taiwanensis species 1 0 508 2624677 no rank 1 1 Haloarcula sp. CBA1115 species 508 0 1592728 Halorientalis genus 1 2 15 0 562 1073987 no rank 1 0 2648975 547 1 Halorientalis sp. IM1011 species 0 1932360 547 1 2 Halomicrobium genus 0 465 203135 6 species Halomicrobium mukohataei 1 0 459 57705 56 0 5297 1644055 order Haloferacales 1 19 9 1 Haloferacaceae family 0 2857 1644056 9 0 293431 379 3 1 2 genus Haloquadratum 376 0 293091 1 species Haloquadratum walsbyi 0 2069 2251 32 4 1 Haloferax genus 0 877 35746 Haloferax gibbonsii species 1 0 640 2246 1 Haloferax volcanii species 1 species Haloferax mediterranei 0 520 2252 2 1 genus Halogeometricum 400 0 60846 1 0 399 60847 species Halogeometricum borinquense 1 no rank 1 2678336 0 404 0 756883 404 1 species halophilic archaeon DL31 0 1963271 1980 35 8 1 family Halorubraceae 4 608 0 1644057 genus Salinigranum 1 2 0 755307 604 1 Salinigranum rubrum species genus Halopenitus 1 2 50 0 1209988 555 1 species Halopenitus persicus 505 0 1048396 25 0 782 56688 genus Halorubrum 1 3 1 Halorubrum trapanicum species 0 458 29284 1 Halorubrum lacusprofundi species 0 299 2247 43 0 1644060 6125 order Natrialbales 19 1 Natrialbaceae family 1 18 83 0 6082 1644061 12 0 1146 121871 Haloterrigena genus 1 3 1 species Haloterrigena turkmenica 0 62320 844 1 Haloterrigena daqingensis species 0 290 588898 2 1 genus Salinarchaeum 0 518 1269201 3 515 0 2621923 no rank 1 1 Salinarchaeum sp. Harcht-Bsk1 species 515 0 1333523 genus 1 0 2256 438 0 438 44930 1 Natronobacterium gregoryi species 0 836 387342 9 1 2 Halopiger genus 1 Halopiger xanaduensis species 0 387343 827 6 0 510 353799 Halostagnicola genus 2 1 1 species Halostagnicola larsenii 0 353800 504 0 605 29287 genus 1 605 0 29288 1 Natronococcus occultus species 63742 0 436 genus 1 1 Natrialba magadii species 0 13769 436 11 0 921 88723 Natrinema genus 3 1 0 490 69525 species Natrinema pellirubrum 1 0 2622230 420 no rank 1 1 Natrinema sp. J7-2 species 0 406552 420 Halobiforma genus 1 2 9 0 589 203193 0 229731 580 species Halobiforma lacisalsi 1 50 1 class Methanomicrobia 0 224756 17380 70 Methanomicrobiales order 15 1 22 0 3606 2191 3 0 1198451 1246 family Methanoregulaceae 1 6 1 433 0 475087 genus Methanosphaerula 1 2 Methanosphaerula palustris species 1 0 475088 432 1 3 Methanoregula genus 0 810 395331 2 Methanoregula boonei species 1 358766 0 225 0 882104 583 species Methanoregula formicica 1 Methanomicrobiaceae family 6 1 1 1650 0 2194 0 230355 299 1 genus 0 299 54120 1 species Methanolacinia petrolearia 10 0 1350 45989 Methanoculleus genus 1 4 Methanoculleus bourgensis species 1 0 541 83986 no rank 1 321 0 2619537 1 species Methanoculleus sp. MAB1 0 86622 321 Methanoculleus marisnigri species 1 0 2198 478 0 213 196137 1 family 213 0 2202 genus 1 0 2203 213 1 Methanospirillum hungatei species 1 family 0 88404 475 0 475 2192 genus 1 Methanocorpusculum labreanum species 1 0 475 83984 1 29 Methanosarcinales order 0 12967 94695 45 Methanosaetaceae family 3 1 8 143067 0 749 genus 2 0 741 2222 0 2223 363 1 Methanothrix soehngenii species 0 378 301375 1 Methanosaeta harundinacea species 4 0 12173 2206 family Methanosarcinaceae 25 1 Methanohalophilus genus 1 3 1 2175 0 652 1 species Methanohalophilus halophilus 0 342 2177 0 2176 309 Methanohalophilus mahii species 1 21 2207 0 8774 Methanosarcina genus 1 13 0 2458 2644672 no rank 4 0 1434103 969 species Methanosarcina sp. WWM596 1 species Methanosarcina sp. MTP4 1 0 1434100 490 Methanosarcina sp. WH1 species 1 0 570 1434102 1 Methanosarcina sp. Kolksee species 0 1434099 429 1 Methanosarcina vacuolata species 0 2215 336 0 607 170861 1 species Methanosarcina lacustris 0 1066 38027 1 Methanosarcina siciliae species Methanosarcina acetivorans species 1 0 2214 505 Methanosarcina barkeri species 1 0 2208 1576 1 species Methanosarcina mazei 2209 0 1237 1 Methanosarcina horonobensis species 0 418008 651 0 2210 317 species Methanosarcina thermophila 1 0 395 196136 genus 1 0 39669 395 1 species Methanosalsum zhilinae 1 genus 0 571 2321 571 0 2322 species Methanohalobium evestigatum 1 0 2220 608 3 1 2 Methanolobus genus 605 0 420950 Methanolobus psychrophilus species 1 101191 0 537 genus 1 0 101192 537 1 species Methanomethylovorans hollandica 2 632 0 2225 genus Methanococcoides 1 3 1 species Methanococcoides methylutens 444 0 2226 Methanococcoides burtonii species 1 0 186 29291 5 1 Methanocellales order 570264 0 737 8 1 4 Methanocellaceae family 0 729 570265 2 1 0 570266 727 genus Methanocella 3 1 Methanocella arvoryzae species 1 0 1175445 584 1175444 0 142 1 species Methanocella conradii 13 1 Archaeoglobi class 0 183980 1537 13 0 2231 1524 1 1 12 order Archaeoglobales 1 11 family Archaeoglobaceae 0 2232 1523 1 2 1 Ferroglobus genus 0 54260 306 1 0 54261 305 1 Ferroglobus placidus species 1 5 genus Archaeoglobus 0 785 2233 1 1 Archaeoglobus veneficus species 58290 0 159 0 84156 68 Archaeoglobus profundus species 1 Archaeoglobus fulgidus species 1 0 302 2234 species Archaeoglobus sulfaticallidus 1 0 255 1316941 0 190818 431 1 3 1 genus Geoglobus Geoglobus ahangari species 1 0 113653 157 0 273 565033 species Geoglobus acetivorans 1 54 clade 0 7326 1783275 0 651137 2232 12 phylum 0 651142 827 no rank 4 2 1 Candidatus Nitrosopelagicus genus 529 0 1593364 1 Candidatus Nitrosopelagicus brevis species 1 1410606 0 528 2 genus 0 1825023 298 1 species Candidatus Nitrosotenuis cloacae 139 0 1603555 species Candidatus Nitrosotenuis sp. AQ6f 1 0 1846278 159 31932 0 1022 order 4 1 4 Nitrosopumilaceae family 0 338190 1022 1 0 338191 821 genus 2 0 487 1580092 Candidatus Nitrosopumilus adriaticus species 1 Candidatus Nitrosopumilus sediminis species 1 0 1229909 334 0 1993653 200 genus 1 1 Candidatus Nitrosomarinus catalina species 0 200 1898749 1643678 0 383 4 class 2 order 0 83 1968909 1968910 0 83 1 1 2 family Candidatus Nitrosocaldaceae 0 498374 82 genus 1 species Candidatus Nitrosocaldus islandicus 1 0 2045011 82 0 1033996 300 1 1 2 order Nitrososphaerales 0 299 1033997 family 1 genus 1 299 0 497726 Nitrososphaera viennensis species 1 0 1034015 299 phylum 1 0 51967 38 genus 1 0 498845 38 Candidatus Korarchaeum cryptofilum species 1 0 498846 38 5056 0 28889 41 phylum class 41 5056 0 183924 order 13 0 853 2266 family Thermoproteaceae 7 1 5 0 2267 503 genus 1 0 95 76886 Caldivirga maquilingensis species 1 76887 0 95 0 164450 201 genus 2 1 Vulcanisaeta distributa species 0 142 164451 1 Vulcanisaeta moutnovskia species 0 985052 59 0 42 2276 genus 1 species Pyrobaculum islandicum 1 0 42 2277 2 genus 160 0 2270 Thermoproteus tenax species 1 0 2271 70 1 species Thermoproteus uzoniensis 90 0 184117 11 0 114378 350 family Thermofilaceae 1 6 5 1 genus Thermofilum 339 0 2268 4 0 2269 102 1 Thermofilum pendens species 1 Thermofilum adornatus species 0 1365176 88 1 species Thermofilum uzonense 0 61 1550241 species Thermofilum carboxyditrophus 1 0 84 1483572 1 10 Sulfolobales order 0 2937 2281 1 family Sulfolobaceae 9 1 1 0 2936 118883 0 238 41980 genus 2 0 51 43687 Metallosphaera sedula species 1 187 0 1006005 Metallosphaera cuprina species 1 0 296 2100760 genus 1 species Sulfolobus solfataricus 1 0 2287 296 genus 3 2284 0 1274 1 Sulfolobus acidocaldarius species 249 0 2285 1 Sulfolobus islandicus species 0 43080 799 0 226 2641160 no rank 1 226 0 1891280 Sulfolobus sp. A20 species 1 0 429 12914 genus 1 species Acidianus hospitalis 1 429 0 563177 0 698 69655 genus 1 111955 0 698 species Sulfolobus tokodaii 1 order 13 0 862 114380 family 3 0 186 2307 genus 1 0 61 54247 1 species Hyperthermus butylicus 0 54248 61 0 44 54251 genus 1 0 44 54252 species Pyrolobus fumarii 1 0 81 2308 1 genus 0 81 1273541 species Pyrodictium delaneyi 1 676 0 2272 1 10 1 Desulfurococcaceae family 0 62 54253 1 genus 0 62 54254 1 species Thermosphaera aggregans genus 2 0 199 2273 0 2275 93 Desulfurococcus mucosus species 1 species Desulfurococcus amylolyticus 1 0 106 94694 2 genus 0 54258 99 1 species Ignicoccus hospitalis 0 74 160233 species Ignicoccus islandicus 1 0 25 54259 genus 1 0 477695 94 Thermogladius calderae species 1 0 1200300 94 2 0 221 2279 Staphylothermus genus 1 3 1 Staphylothermus hellenicus species 0 84599 101 0 118 2280 1 species Staphylothermus marinus 5 1 order Acidilobales 0 404 871006 2 0 339 255472 family 1 339 0 200414 1 genus 0 200415 339 1 Caldisphaera lagunensis species 3 1 family Acidilobaceae 0 63 871007 1 Acidilobus genus 1 2 1 0 105850 62 0 242703 61 Acidilobus saccharovorans species 1 0 0 1 name 175 0 26462078 2 superkingdom Bacteria 1 4448 1711 clade 18377429 0 1783272 0 67819 1090 5 phylum 1 5 Fimbriimonadia class 1090 0 1663419 9 17 0 1081 1663425 Fimbriimonadales order 1 4 8 0 1064 1663426 family Fimbriimonadaceae 1 3 1 2 Fimbriimonas genus 0 1056 1005038 4 1052 0 1005039 species Fimbriimonas ginsengisoli 1 1 46 phylum Chloroflexi 0 200795 19049 11 32061 0 4353 9 1 11 class Chloroflexia 0 4344 32064 29 1 10 Chloroflexales order suborder 4 0 2408 1508595 family Roseiflexaceae 4 1 31 0 2408 1508635 0 120961 2377 11 1 3 genus Roseiflexus species Roseiflexus castenholzii 1 0 120962 1224 0 2609473 1142 no rank 1 0 1142 357808 1 Roseiflexus sp. RS-1 species 1907 0 1508594 suborder 5 0 1907 1106 8 5 1 Chloroflexaceae family 1 4 Chloroflexus genus 1107 0 1899 24 Chloroflexus aggregans species 1 0 617 152260 0 1258 1108 629 2 1 Chloroflexus aurantiacus species 0 480224 629 1 Chloroflexus sp. Y-400-fl strain 0 292625 3583 23 1 8 class Anaerolineae 1 7 order Anaerolineales 0 292629 3560 6 20 0 292628 3554 family Anaerolineaceae 1 6 6 0 1171 233189 genus Anaerolinea 1 2 1 Anaerolinea thermophila species 0 1165 167964 6 2019482 0 679 genus Brevefilum 1 2 Brevefilum fermentans species 1 0 1986204 673 1324991 0 1684 1 no rank 0 1684 1889813 1 species Anaerolineaceae bacterium oral taxon 439 0 3022 1382928 69 1 5 Ardenticatenia class order Ardenticatenales 4 1 21 0 1382929 2953 family Ardenticatenaceae 3 1 27 0 1382930 2932 2 1 Candidatus Promineofilum genus 0 2905 1988031 24 0 2881 1806508 species Candidatus Promineofilum breve 1 class Thermomicrobia 7 1 22 0 1966 189775 0 473 189776 order 2 family Thermomicrobiaceae 1 2 4 473 0 189777 0 499 469 genus 1 0 500 469 species Thermomicrobium roseum 1 subclass 4 0 85000 1471 0 85001 1471 14 4 1 order Sphaerobacterales 0 1457 255728 suborder 3 19 1457 0 85002 family Sphaerobacteraceae 1 3 genus Sphaerobacter 2 1 10 0 1438 2056 0 2057 1428 Sphaerobacter thermophilus species 1 1 5 Caldilineae class 0 1383 475962 10 1 4 Caldilineales order 0 475963 1373 11 5 0 1362 475964 Caldilineaceae family 1 3 0 1357 233191 23 2 1 Caldilinea genus 0 1334 133453 Caldilinea aerophila species 1 47 0 301297 4731 class Dehalococcoidia 9 1 11 0 1667 670486 Dehalogenimonas genus 1 3 0 1839801 958 Dehalogenimonas formicexedens species 1 0 552810 698 Dehalogenimonas lykanthroporepellens species 1 1 5 Dehalococcoidales order 0 3017 1202465 6 27 0 1202464 3011 Dehalococcoidaceae family 1 4 14 0 2984 61434 Dehalococcoides genus 3 1 237581 0 625 no rank 1 1522671 0 625 1 species Dehalococcoides sp. UCH007 0 2345 61435 1 species Dehalococcoides mccartyi 110 0 201174 10195817 Actinobacteria phylum 1 653 class Rubrobacteria 6 1 22 0 2041 84995 2019 0 84996 52 5 1 order Rubrobacterales 23 0 84997 1967 family Rubrobacteraceae 1 4 Rubrobacter genus 1 3 49 42255 0 1944 0 49319 1181 Rubrobacter xylanophilus species 1 1 Rubrobacter radiotolerans species 42256 0 714 0 1497346 2224 10 1 5 Thermoleophilia class 59 588673 0 2214 Solirubrobacterales order 1 4 0 2155 320583 34 3 1 Conexibacteraceae family 85 191494 0 2121 Conexibacter genus 2 1 1 species Conexibacter woesei 0 191495 2036 Coriobacteriia class 33 1 660 311296 0 84998 741 1643822 0 59149 order Eggerthellales 18 1 17 1 family Eggerthellaceae 0 1643826 58408 10884 12 0 5504 84108 Slackia genus 2 1 0 84110 5492 1 species Slackia heliotrinireducens 0 14966 644652 64 3 1 genus Gordonibacter species Gordonibacter urolithinfaciens 1 1335613 0 8454 Gordonibacter massiliensis species 1 0 1841863 6448 3 1 Eggerthella genus 0 84111 15158 193 species Eggerthella lenta 1 0 11622 84112 0 2648737 3343 1 no rank species Eggerthella sp. YY7918 1 0 3343 502558 5 0 803 84162 genus Cryptobacterium 1 2 84163 0 798 Cryptobacterium curtum species 1 7 0 1162 1981050 Phoenicibacter genus 2 1 Phoenicibacter massiliensis species 1 0 1944646 1155 2 1 Adlercreutzia genus 0 447020 7005 13 0 6992 446660 species Adlercreutzia equolifaciens 1 1 0 79603 2926 Denitrobacterium genus 2 1 0 79604 2925 1 species Denitrobacterium detoxificans 0 84999 251487 372 1 14 Coriobacteriales order 1 6 family Coriobacteriaceae 0 234605 84107 1173 genus Coriobacterium 1 2 17 0 33870 2457 2440 0 33871 Coriobacterium glomerans species 1 no rank 1 0 3952 84113 1531429 0 3952 1 species Coriobacteriaceae bacterium 68-1-3 1 2 Collinsella genus 0 227023 102106 86 Collinsella aerofaciens species 1 74426 0 226937 Atopobiaceae family 7 1 279 0 1643824 16510 0 2767353 1298 1 genus 1 species Atopobium parvulum 0 1382 1298 genus Olsenella 4 1 110 14919 0 133925 0 133926 4405 species Olsenella uli 1 1 no rank 0 2638792 3155 1 species Olsenella sp. oral taxon 807 0 712411 3155 species Olsenella sp. Marseille-P2300 1 0 1805478 7249 genus Atopobium 1 1380 0 14 1 0 1768 84992 class Acidimicrobiia 7 1 49 0 1767 84993 Acidimicrobiales order 1 6 0 2448023 1307 family 2 genus Ilumatobacter 1 2 26 0 682522 1307 467094 0 1281 Ilumatobacter coccineus species 1 3 1 family Acidimicrobiaceae 0 411 84994 11 5 0 400 53634 genus Acidimicrobium 2 1 1 Acidimicrobium ferrooxidans species 395 0 53635 no rank 4 0 1752188 990 1 species Actinobacteria bacterium IMCC26103 0 223 1848756 Actinobacteria bacterium IMCC25003 species 1 0 1848255 263 0 157 1848755 Actinobacteria bacterium IMCC26077 species 1 1 species Actinobacteria bacterium IMCC19121 0 347 1848754 0 9877388 1760 6992 1 597 class Actinobacteria 203 0 85010 47301 order Pseudonocardiales 1 42 family Pseudonocardiaceae 1 41 678 0 47098 2070 31 0 142577 1570 genus Prauserella 1 2 species Prauserella marina 1 0 1539 530584 genus Pseudonocardia 1 8 306 0 1847 9584 1643 0 240495 species Pseudonocardia dioxanivorans 1 no rank 6 0 7635 2619320 species Pseudonocardia sp. EC080619-01 1 0 1096856 1404 1047 0 1690815 Pseudonocardia sp. HH130630-07 species 1 species Pseudonocardia sp. HH130629-09 1 1227 0 1641402 0 1172 1096868 1 species Pseudonocardia sp. EC080625-04 445576 0 1364 1 Pseudonocardia sp. AL041005-10 species Pseudonocardia sp. EC080610-09 species 1 0 1688404 1421 2 1 genus Kutzneria 43356 0 2466 11 43357 0 2455 1 Kutzneria albida species genus Lentzea 1 2 19 2138 0 165301 Lentzea guizhouensis species 1 0 2119 1586287 2 1 genus Alloactinosynnema 0 1421 674734 2 1 no rank 0 1419 2636053 1653480 0 1419 1 species Alloactinosynnema sp. L-07 13 1733 0 1835 genus Saccharopolyspora 1 2 0 1720 1836 Saccharopolyspora erythraea species 1 Saccharothrix genus 2 1 17 0 2198 2071 1 Saccharothrix espanaensis species 0 103731 2181 genus Saccharomonospora 2 1 2 0 1851 753 0 751 1852 1 species Saccharomonospora viridis 0 65496 6301 169 6 1 Actinoalloteichus genus 0 1281 1470176 Actinoalloteichus hoggarensis species 1 Actinoalloteichus sp. ADI127-7 species 1 0 1612552 1338 0 2644606 2490 2 no rank Actinoalloteichus sp. AHMU CJ021 species 1 1166 0 2072503 1 species Actinoalloteichus sp. GBA129-24 1324 0 1612551 0 340345 1023 1 species Actinoalloteichus hymeniacidonis 2078 0 2029 10 1 2 genus Kibdelosporangium Kibdelosporangium phytohabitans species 1 0 860235 2068 0 11664 1813 195 7 1 Amycolatopsis genus 208439 0 1649 1 species Amycolatopsis japonica no rank 2 2618356 0 3076 1 species Amycolatopsis sp. BJA-103 0 1911175 1456 1 species Amycolatopsis sp. AA4 1620 0 1896961 0 33910 2105 1 species Amycolatopsis mediterranei 0 31958 2936 Amycolatopsis orientalis species 1 1 species Amycolatopsis methanolica 0 1814 1703 Actinosynnema genus 3 1 98 0 4514 40566 Actinosynnema pretiosum species 1 0 2287 42197 0 40567 2129 1 species Actinosynnema mirum 0 1070 622450 order 3 0 1070 622451 19 1 3 family Actinopolysporaceae Actinopolyspora genus 2 1 22 0 1849 1051 species Actinopolyspora erythraea 1 0 414996 1029 6 0 1643684 1718 order Nakamurellales 1 4 3 1 Nakamurellaceae family 85031 0 1712 28 25 0 1684 53460 genus Nakamurella 1 2 0 1659 53461 Nakamurella multipartita species 1 4 1 order Acidothermales 0 384 1643683 2 3 1 Acidothermaceae family 0 85032 382 4 9 0 28048 378 Acidothermus genus 1 2 0 28049 369 species Acidothermus cellulolyticus 1 63 0 85008 22590 order Micromonosporales 20 1 19 1 family Micromonosporaceae 22527 0 28056 358 156 0 10204 1865 Actinoplanes genus 6 1 species Actinoplanes friuliensis 1 0 196914 1944 3 no rank 0 6048 2626549 species Actinoplanes sp. SE50/110 1 134676 0 1801 species Actinoplanes sp. SE50 1 1801 0 2033844 0 649831 2446 species Actinoplanes sp. N902-109 1 Actinoplanes missouriensis species 1 2056 0 1866 1 genus Verrucosispora 0 84593 10 673534 0 4872 112 1 4 Plantactinospora genus no rank 3 0 4760 2631981 0 1469 2071627 species Plantactinospora sp. BB1 1 1632 0 2024580 species Plantactinospora sp. KBS50 1 species Plantactinospora sp. BC1 1 0 2108470 1659 1 4 genus Micromonospora 4978 0 1873 156 0 1338 1003110 species Verrucosispora maris 1 no rank 1 0 2617518 1821 1 Micromonospora sp. L5 species 0 1821 648999 0 47850 1663 species Micromonospora aurantiaca 1 19 0 2105 168694 Salinispora genus 3 1 917 0 168695 1 Salinispora tropica species 0 1169 168697 1 species Salinispora arenicola Frankiales order 1 7 15 0 5719 85013 family Frankiaceae 1 6 91 5704 0 74712 5 1 Frankia genus 1854 0 5613 93 1 species Frankia inefficax 0 298654 1858 Frankia casuarinae species 1 0 106370 834 no rank 1 0 2632575 1487 Frankia sp. EAN1pec species 1 0 298653 1487 species Frankia alni 1 0 1341 1859 70 0 23677 2037 order Actinomycetales 19 1 family Actinomycetaceae 18 1 6260 0 23607 2049 2726 0 2050 210 1 2 Mobiluncus genus Mobiluncus curtisii species 1 0 2516 2051 genus Arcanobacterium 2 1 2 0 28263 624 1 Arcanobacterium haemolyticum species 28264 0 622 genus 1 2529408 0 1306 1 species Actinomyces meyeri 1306 0 52773 0 667 1653174 1 genus 1 species Actinotignum schaalii 0 59505 667 208 0 10415 1654 genus Actinomyces 9 1 3 no rank 0 2609248 3886 1 species Actinomyces sp. oral taxon 897 0 1248 2081702 0 1215 1851395 1 species Actinomyces sp. Chiba101 species Actinomyces sp. oral taxon 414 1 0 712122 1423 Actinomyces sp. VUL4_3 species 1 0 1912795 417 1 Actinomyces radicidentis species 0 1938 111015 544580 0 1160 1 Actinomyces oris species 1852377 0 1717 1 Actinomyces pacaensis species species Actinomyces gaoshouyii 1 0 1089 1960083 Trueperella genus 2 1 6 0 1609 1069494 0 1661 1603 Trueperella pyogenes species 1 no rank 2 0 1141 1643818 Thermobispora genus 2 1 11 0 1141 147067 0 2006 1130 species Thermobispora bispora 1 14451 0 85012 72 16 1 Streptosporangiales order Nocardiopsaceae family 7 1 94 0 6038 83676 0 2013 4818 61 1 4 Nocardiopsis genus 0 1668 280236 1 Nocardiopsis gilva species 0 2014 1801 1 species Nocardiopsis dassonvillei 0 53437 1288 species Nocardiopsis alba 1 Thermobifida genus 1 2 10 1126 0 83677 species Thermobifida fusca 1 1116 0 2021 0 2004 6287 122 1 5 family Streptosporangiaceae 0 3453 83681 26 1 2 Nonomuraea genus 0 3427 2593643 1 no rank 0 3427 1909395 1 Nonomuraea sp. ATCC 55076 species 26 0 2000 2712 Streptosporangium genus 2 1 2001 0 2686 1 species Streptosporangium roseum 23 0 2054 2012 family Thermomonosporaceae 1 3 genus Thermomonospora 1 2 58 0 2031 2019 1 species Thermomonospora curvata 0 2020 1973 1 12 Candidatus Nanopelagicales order 3962 0 2039638 6 0 2162846 3956 11 family 7 0 2039639 1437 Candidatus Nanopelagicus genus 4 1 426 0 1884916 1 species Candidatus Nanopelagicus abundans species Candidatus Nanopelagicus limnes 1 0 467 1884634 1884915 0 537 1 Candidatus Nanopelagicus hibericus species genus Candidatus Planktophila 1 7 28 0 2519 622681 0 338 573600 species Candidatus Planktophila limnetica 1 302 0 1884907 1 species Candidatus Planktophila vernalis 0 495 1884905 1 species Candidatus Planktophila versatilis 1 species Candidatus Planktophila sulfonica 0 299 1884904 species Candidatus Planktophila dulcis 1 1884914 0 565 Candidatus Planktophila lacus species 1 0 1884913 492 82 1 Streptomycetales order 0 142842 85011 389 Streptomycetaceae family 1 81 943 142453 0 2062 Streptomyces genus 75 1 4472 0 1883 133316 37159 0 2593676 no rank 24 0 1420 1961713 1 Streptomyces sp. MOE7 species 1754 0 1262452 1 species Streptomyces sp. 769 0 1751294 1478 species Streptomyces sp. 4F 1 species Streptomyces sp. SAT1 1 0 1402 1849967 0 1661694 1423 species Streptomyces sp. Tue 6075 1 species Streptomyces sp. CFMR 7 1 0 1413 1649184 0 1833 2135430 species Streptomyces sp. P3 1 Streptomyces sp. CCM_MD2014 species 1 1561022 0 1543 Streptomyces sp. WAC00288 species 1 0 1298 2094021 1 species Streptomyces sp. CLI2509 0 1984801 1383 1700 0 1964449 1 species Streptomyces sp. 3211 0 1781 444103 species Streptomyces sp. CNQ-509 1 1 species Streptomyces sp. SirexAA-E 0 1174 862751 0 1265601 1131 1 species Streptomyces sp. PAMC 26508 0 1511 1812480 Streptomyces sp. fd1-xmd species 1 1 Streptomyces sp. Sge12 species 0 1972846 1713 0 1893 1841249 Streptomyces sp. RTd22 species 1 1 Streptomyces sp. CMB-StM0423 species 0 2042 2059884 1 species Streptomyces sp. TN58 0 1215 234612 1725411 0 1782 species Streptomyces sp. CdTB01 1 1 species Streptomyces sp. Mg1 0 465541 1398 1 species Streptomyces sp. M56 0 2110 1495638 1 Streptomyces sp. FR-008 species 0 206662 1442 species Streptomyces sp. S8 1 1837283 0 1320 Streptomyces gilvosporeus species 1 0 553510 1659 0 1289 408015 1 Streptomyces xiamenensis species species group 2 0 2814 1477431 0 1902 1499 Streptomyces coelicolor species 1 42239 0 1315 Streptomyces sampsonii species 1 species Streptomyces pluripotens 1 0 1077 1355015 0 54571 2876 Streptomyces venezuelae species 1 1 Streptomyces avermitilis species 0 1598 33903 3224 0 1888 species Streptomyces albus 1 0 1296 68202 Streptomyces fulvissimus species 1 0 2507 68280 1 Streptomyces violaceusniger species Streptomyces xinghaiensis species 1 0 1246 1038928 1 Streptomyces autolyticus species 0 75293 2242 1 Streptomyces lydicus species 0 4292 47763 1 species Streptomyces malaysiensis 0 2420 92644 0 1579 38300 species Streptomyces pristinaespiralis 1 1 species Streptomyces lincolnensis 0 1640 1915 species Streptomyces pratensis 1 0 1057 1169025 0 1992 362257 Streptomyces vietnamensis species 1 0 1535 1907 Streptomyces glaucescens species 1 species Streptomyces sp. S10(2016) 1 0 1783515 1858 0 4283 1912 1 Streptomyces hygroscopicus species 0 1672 1926 Streptomyces reticuli species 1 Streptomyces bingchenggensis species 1 2516 0 379067 1 Streptomyces niveus species 0 1324 193462 1940 0 1688 Streptomyces albireticuli species 1 1 Streptomyces noursei species 0 1971 1489 1 Streptomyces chartreusis species 0 1616 1969 1 Streptomyces cyaneogriseus species 0 68192 1394 0 68214 1969 species Streptomyces griseochromogenes 1 1 species Streptomyces cattleya 0 29303 1800 0 1437453 1654 Streptomyces leeuwenhoekii species 1 1490 0 1889 1 Streptomyces ambofaciens species 629295 0 3044 2 species group species subgroup 1 0 1635 1482596 species Streptomyces griseus 1 0 1911 1635 0 1482558 1409 species subgroup 1 species Streptomyces globisporus 1 1409 0 1908 Streptomyces sp. XZHG99 species 1 0 1387 2049881 0 1412 1935 1 species Streptomyces violaceoruber 0 1757 42684 species Streptomyces collinus 1 0 146923 1705 species Streptomyces parvulus 1 0 1473 1916 species Streptomyces lividans 1 Streptomyces alboflavus species 1 0 67267 1940 Streptomyces albulus species 1 68570 0 1742 0 164348 1771 species Streptomyces puniciscabiei 1 1616117 0 1292 Streptomyces formicae species 1 species Streptomyces peucetius 1 0 1950 1474 1513 0 1914 1 species Streptomyces lavendulae species Streptomyces rubrolavendulae 1 0 285473 1329 species Streptomyces clavuligerus 1 1901 0 1804 Streptomyces scabiei species 1 0 1828 1930 Streptomyces alfalfae species 1 1869 0 1642299 0 3249 68249 Streptomyces pactum species 1 1 5 genus Kitasatospora 0 8194 2063 100 1663 0 1894 species Kitasatospora aureofaciens 1 0 2648 2633591 no rank 1 1 Kitasatospora sp. MMS16-BH015 species 0 2018025 2648 0 2066 1994 1 species Kitasatospora setae Kitasatospora albolonga species 1 0 1789 68173 0 52018 355 no rank 1 species Actinobacteria bacterium IMCC26256 1 0 355 1650658 order Geodermatophilales 8 1 14 0 4827 1643682 family Geodermatophilaceae 1 7 134 0 85030 4813 2 1 Blastococcus genus 0 1224 38501 8 1216 0 138336 1 Blastococcus saxobsidens species 88138 0 1797 30 1 2 Modestobacter genus 1 species Modestobacter marinus 0 1767 477641 25 1658 0 1860 genus Geodermatophilus 2 1 1 species Geodermatophilus obscurus 0 1861 1633 133 0 85004 9309290 order Bifidobacteriales 25 1 9900 0 9309157 31953 Bifidobacteriaceae family 1 24 19 1 genus Bifidobacterium 0 9295585 1678 2636 Bifidobacterium longum species 1 0 216816 1452380 0 1694 4765 Bifidobacterium pseudolongum species 1 3120 0 33905 1 species Bifidobacterium thermophilum 155066 0 1681 species Bifidobacterium bifidum 1 0 1508 638619 Bifidobacterium actinocoloniiforme species 1 28025 0 4177 species Bifidobacterium animalis 1 346199 0 1686 148048 2 1 species Bifidobacterium catenulatum 0 198151 630129 Bifidobacterium kashiwanohense subspecies 1 1 Bifidobacterium breve species 0 1685 221991 1 species Bifidobacterium pseudocatenulatum 0 191173 28026 0 1683 63961 species Bifidobacterium angulatum 1 Bifidobacterium asteroides species 1 0 1582 1684 0 1691 1134 species Bifidobacterium indicum 1 8391 0 158787 1 species Bifidobacterium scardovii 0 1689 23145 1 Bifidobacterium dentium species 0 1687 1111 1 Bifidobacterium coryneforme species 0 1680 6808177 Bifidobacterium adolescentis species 1 species Bifidobacterium choerinum 1 35760 0 5069 2 0 1510 196082 Parascardovia genus 1 2 0 78258 1508 Parascardovia denticolens species 1 genus 1 0 1562 2701 1 species Gardnerella vaginalis 0 2702 1562 0 196081 600 1 genus 78259 0 600 1 species Scardovia inopinata 0 85009 27753 161 33 1 Propionibacteriales order 0 85015 9521 188 1 13 family Nocardioidaceae 1 2 genus Kribbella 0 1604 182639 25 1 species Kribbella flavida 0 182640 1579 Micropruina genus 2 1 57 0 116071 1202 Micropruina glycogenica species 1 0 1145 75385 19 2040 0 1005 genus Aeromicrobium 1 2 species Aeromicrobium erythreum 1 0 2041 986 0 3726 1839 105 1 4 Nocardioides genus species Nocardioides dokdonensis 1 0 1285 450734 0 2615069 1205 no rank 1 species Nocardioides sp. JS614 1 0 1205 196162 Nocardioides sp. 78 species 1 1131 0 2045452 2 1 genus Pimelobacter 0 2044 1796 23 0 2045 1773 Pimelobacter simplex species 1 304 0 31957 18071 family Propionibacteriaceae 1 19 0 1000 2801844 1 genus 1000 0 1750 1 Pseudopropionibacterium propionicum species 37 0 2780 1743 genus Propionibacterium 1 3 0 588 2608905 1 no rank 0 588 671223 1 species Propionibacterium sp. oral taxon 193 0 1744 2155 1 Propionibacterium freudenreichii species 0 3508 1912216 37 4 1 Cutibacterium genus 1 Cutibacterium granulosum species 0 790 33011 species Cutibacterium acnes 1 0 973 1747 1 Cutibacterium avidum species 0 33010 1708 genus 1 0 203133 1238 0 2633994 1238 no rank 1 1238 0 1871034 species Propionimicrobium sp. Marseille-P3275 1 18 0 29404 978 genus Microlunatus 1 2 Microlunatus phosphovorus species 1 0 29405 960 72763 0 5824 66 1 5 Tessaracoccus genus 1 Tessaracoccus aquimaris species 0 1332264 1790 0 1501 2635419 1 no rank Tessaracoccus sp. T2.5-30 species 1 1501 0 1909732 0 1292 399497 Tessaracoccus flavescens species 1 0 1610493 1175 Tessaracoccus flavus species 1 Acidipropionibacterium genus 2 1 11 0 2439 1912215 1 species Acidipropionibacterium acidipropionici 0 2428 1748 6 0 1794 85014 order Glycomycetales 1 4 Glycomycetaceae family 1 3 40 0 1788 85034 2 1 genus Stackebrandtia 0 1748 283810 21 Stackebrandtia nassauensis species 1 0 283811 1727 4 1 order Catenulisporales 2894 0 414714 12 20 0 414877 2882 Catenulisporaceae family 1 3 genus Catenulispora 1 2 66 0 2862 414878 0 2796 304895 Catenulispora acidiphila species 1 Micrococcales order 144 1 1081 0 85006 113421 family Jonesiaceae 3 1 2 0 85022 353 2 1 genus Jonesia 0 43673 351 8 Jonesia denitrificans species 1 0 343 43674 2 0 484 85018 family Dermatophilaceae 3 1 Dermatophilus genus 1 2 16 0 482 1862 Dermatophilus congolensis species 1 0 1863 466 0 577468 106 no rank 2 1 0 106 2038 genus Tropheryma 2 1 1 species Tropheryma whipplei 0 2039 105 0 85021 4601 47 1 9 Intrasporangiaceae family 17 1467 0 267408 Arsenicicoccus genus 2 1 1 no rank 1450 0 2663846 0 1450 1658671 1 species Arsenicicoccus sp. oral taxon 190 Janibacter genus 1 2 20 0 53457 982 1 Janibacter indicus species 0 857417 962 21 0 887 53357 genus Intrasporangium 1 2 0 866 53358 Intrasporangium calvum species 1 0 265976 1218 39 2 1 Serinicoccus genus 1758689 0 1179 1 species Serinicoccus sp. JLT9 family Micrococcaceae 1 39 1947 0 1268 47280 genus 1 0 2078575 649 1 species Arthrobacter sp. IHBB 11108 0 1618207 649 1 2 Neomicrococcus genus 0 1868332 11566 9 0 556325 11557 species Neomicrococcus aestuarii 1 1645 0 353 1 genus 1 Renibacterium salmoninarum species 0 1646 353 0 16839 1663 400 1 15 genus Arthrobacter Arthrobacter crystallopoietes species 1 1347 0 37928 12 no rank 0 13451 235627 1849032 0 1134 species Arthrobacter sp. U41 1 0 1494608 1127 species Arthrobacter sp. PAMC 25486 1 1237 0 1357915 1 Arthrobacter sp. QXT-31 species 1 Arthrobacter sp. ATCC 21022 species 0 1771959 953 0 1014 2020486 1 species Arthrobacter sp. YN Arthrobacter sp. LS16 species 1 0 1368 1690248 1 Arthrobacter sp. FB24 species 1259 0 290399 0 1041 2079227 Arthrobacter sp. PGP41 species 1 species Arthrobacter sp. ZXY-2 1 883 0 1806905 0 823 1118963 1 species Arthrobacter sp. Rue61a 0 1704044 1191 1 Arthrobacter sp. ERGS1:01 species 1 Arthrobacter sp. YC-RL1 species 1652545 0 1421 1 Arthrobacter alpinus species 0 656366 1641 4 1 genus Pseudarthrobacter 0 3684 1742993 34 0 1289 85085 species Pseudarthrobacter chlorophenolicus 1 1 species Pseudarthrobacter sulfonivorans 0 1142 121292 0 361575 1219 species Pseudarthrobacter phenanthrenivorans 1 Glutamicibacter genus 1 2 15 0 1812 1742989 0 256701 1797 Glutamicibacter arilaitensis species 1 57493 0 3058 53 1 4 Kocuria genus Kocuria palustris species 1 0 71999 927 Kocuria flava species 1 0 446860 1101 1 species Kocuria rhizophila 977 0 72000 3 1 genus Rothia 0 32207 3973 2 0 2047 539 species Rothia dentocariosa 1 species Rothia mucilaginosa 1 0 3432 43675 0 1742992 822 5 2 1 genus Paenarthrobacter Paenarthrobacter aurescens species 1 817 0 43663 0 1240 596707 28 1 2 genus Sinomonas 1 species Sinomonas atrocyanea 0 1212 37927 2 1 Micrococcus genus 0 1337 1269 18 0 1319 1270 1 Micrococcus luteus species 62 0 6466 85017 family Promicromonosporaceae 9 1 0 186188 1592 16 1 2 genus Xylanimonas 0 1576 186189 1 Xylanimonas cellulosilytica species Cellulosimicrobium genus 3 1 41 2571 0 157920 0 1226 1710 1 Cellulosimicrobium cellulans species 2624466 0 1304 1 no rank Cellulosimicrobium sp. TH-20 species 1 0 1304 1980001 genus Isoptericola 1 3 26 0 2241 254250 0 888 139208 species Isoptericola variabilis 1 1 Isoptericola dokdonensis species 0 1327 372663 1 6 Cellulomonadaceae family 0 4596 85016 47 0 1707 4549 69 5 1 genus Cellulomonas 0 1711 1107 1 species Cellulomonas flavigena no rank 1 926 0 2620175 species Cellulomonas sp. PSBB021 1 0 2003551 926 0 11 1263 Cellulomonas gilvus species 1 0 1184 1708 species Cellulomonas fimi 1 0 8340 85020 89 10 1 Dermabacteraceae family genus 1 0 472568 520 species Devriesea agamarum 1 0 520 472569 706 0 36739 3 1 2 Dermabacter genus 0 703 1630135 1 species Dermabacter vaginalis 128 43668 0 7025 genus Brachybacterium 1 6 43669 0 1441 species Brachybacterium faecium 1 0 2623841 1439 1 no rank 0 1903186 1439 1 Brachybacterium sp. P6-10-X1 species 0 1296 2017485 1 Brachybacterium sp. VR2415 species 1 species Brachybacterium ginsengisoli 0 1374 1331682 Brachybacterium sp. VM2412 species 1 0 1347 2017484 1 3 Beutenbergiaceae family 0 125316 1100 3 22 0 84756 1097 Beutenbergia genus 1 2 0 84757 1075 species Beutenbergia cavernae 1 Dermacoccaceae family 1 7 23 0 145357 2962 20 0 983 57499 Kytococcus genus 1 2 Kytococcus sedentarius species 1 0 1276 963 Dermacoccus genus 1 2 10 0 57495 1058 species Dermacoccus nishinomiyaensis 1 0 1048 1274 0 898 745364 27 1 2 genus Luteipulveratus 0 871 571913 Luteipulveratus mongoliensis species 1 30 1814 0 85019 Brevibacteriaceae family 3 1 0 1696 1784 16 1 2 Brevibacterium genus 0 1768 1703 species Brevibacterium linens 1 Microbacteriaceae family 46 1 397 85023 0 33108 1 4 Curtobacterium genus 0 2034 2930 53 species Curtobacterium pusillum 1 1085 0 69373 2 no rank 0 1792 257496 species Curtobacterium sp. MR_MD2014 1 1561023 0 913 species Curtobacterium sp. BH-2-1-1 1 0 879 1905847 222 0 4761 1573 Clavibacter genus 1 6 species Clavibacter michiganensis 5 1 895 0 4539 28447 0 716 31963 subspecies Clavibacter nebraskensis 1 0 31964 1278 subspecies Clavibacter sepedonicus 1 0 1874630 959 Clavibacter capsici subspecies 1 subspecies Clavibacter insidiosus 1 0 33014 691 1 2 Cnuibacter genus 0 1759331 1078 1 1 species Cnuibacter physcomitrellae 0 1077 1619308 0 261 1705353 genus 1 Aurantimicrobium minutum species 1 0 708131 261 281 0 12413 33882 genus Microbacterium 14 1 species Microbacterium paludicola 1 300019 0 910 1 species Microbacterium hominis 162426 0 1012 84292 0 745 Microbacterium chocolatum species 1 1 species Microbacterium testaceum 0 701 2033 0 2609290 7614 8 no rank 1 Microbacterium sp. CGR1 species 0 1696072 770 1906742 0 1024 Microbacterium sp. BH-3-3-3 species 1 0 1916917 908 Microbacterium sp. 1.5R species 1 0 771 1938334 1 species Microbacterium sp. TPU 3598 0 2103230 1106 Microbacterium sp. str. 'China' species 1 species Microbacterium sp. No. 7 1 0 1714373 1216 species Microbacterium sp. PAMC 28756 1 855 0 1795053 0 964 367477 species Microbacterium sp. XT11 1 Microbacterium aurum species 1 0 1150 36805 1 genus 0 1254 518733 1 Microterricola viridarii species 0 412690 1254 Microcella genus 1 2 2 0 337004 864 1 Microcella alkaliphila species 0 862 279828 0 1255 447237 4 2 1 Frondihabitans genus no rank 1 0 2626248 1251 1 Frondihabitans sp. PAMC 28766 species 1795630 0 1251 1 2 genus Leifsonia 0 2107 110932 21 Leifsonia xyli species 1 0 2086 1575 2 1 genus Agromyces 1206 0 33877 3 1 Agromyces aureus species 0 453304 1203 2 no rank 437 0 1655488 2 clade 0 1655489 437 genus 2 0 437 529883 Rhodoluna lacicola species 1 529884 0 247 species Candidatus Rhodoluna planktonica 1 535712 0 190 52 2692 0 69578 genus Cryobacterium 3 1 0 2649013 1318 1 no rank Cryobacterium sp. LW097 species 1 0 1318 1978566 species Cryobacterium arcticum 1 0 670052 1322 genus 1 0 515 1434032 0 1159327 515 Pontimonas salivibrio species 1 14 0 33886 938 genus Rathayibacter 1 3 1 Rathayibacter toxicus species 0 225 145458 1 species Rathayibacter tritici 0 699 33888 1 3 family Sanguibacteraceae 0 1130 145360 6 2 1 Sanguibacter genus 0 60919 1124 12 1 Sanguibacter keddieii species 0 1112 60920 1 162 Corynebacteriales order 0 85007 143594 1146 85028 0 2242 16 4 1 family Tsukamurellaceae 2226 0 2060 73 1 3 genus Tsukamurella 707 0 2061 species Tsukamurella paurometabola 1 0 1446 57704 1 species Tsukamurella tyrosinosolvens 352 0 48837 1762 family Mycobacteriaceae 1 56 0 697025 510 1 genus species Hoyosella subflava 1 0 639313 510 0 1946 1073531 genus 2 1 Mycobacterium sinense species 0 1120 875328 0 826 1788 species Mycobacterium terrae 1 2300 27491 0 1763 Mycobacterium genus 34 1 species Mycobacterium haemophilum 1 0 632 29311 1 Mycobacterium dioxanotrophicus species 482462 0 1174 1 Mycobacterium liflandii species 0 261524 649 Mycobacterium ulcerans species 1 0 770 1809 species group 8 0 120793 5764 species Mycobacterium colombiense 1 339268 0 1176 2114 0 1764 Mycobacterium avium species 1 0 1767 1468 347 1 4 Mycobacterium intracellulare species 1 subspecies Mycobacterium chimaera 0 696 222805 subspecies Mycobacterium yongonense 1 0 240 1203599 subspecies Mycobacterium indicus pranii 1 185 0 35617 254 0 1138383 species Mycobacterium paraintracellulare 1 0 701042 752 1 Mycobacterium marseillense species 1080 0 1768 species Mycobacterium kansasii 1 919 0 2249310 1 species group Mycobacterium shigaense species 1 0 919 722731 0 1769 347 1 species Mycobacterium leprae 2020 0 77643 species group 4 499 1773 0 1393 species Mycobacterium tuberculosis 1 3 0 33894 446 Mycobacterium africanum biotype 1 1 Mycobacterium bovis biotype 0 448 1765 0 627 78331 Mycobacterium canettii species 1 1 species Mycobacterium marinum 0 1781 798 0 2642494 11038 13 no rank 0 530 1561223 Mycobacterium sp. QIA-37 species 1 species Mycobacterium sp. KMS 1 677 0 189918 Mycobacterium sp. VKM Ac-1817D species 1 0 1273687 899 0 164756 649 species Mycobacterium sp. MCS 1 species Mycobacterium sp. PYR15 1 0 817 2051552 0 713 164757 Mycobacterium sp. JLS species 1 1545728 0 1088 1 Mycobacterium sp. EPa45 species 1 species Mycobacterium sp. WY10 0 1920667 815 1 species Mycobacterium sp. djl-10 0 1879023 1324 0 1168287 252 Mycobacterium sp. MOTT36Y species 1 1 Mycobacterium sp. YC-RL4 species 1055 0 1682113 species Mycobacterium sp. NRRL B-3805 1 1570328 0 967 1 Mycobacterium sp. JS623 species 0 1252 212767 13 genus 14613 0 1866885 1 Mycobacterium rhodesiae species 0 36814 819 species Mycobacterium smegmatis 1 1772 0 1323 0 1256 1791 1 species Mycobacterium aurum Mycobacterium thermoresistibile species 1 0 1797 1246 1 Mycobacterium phlei species 1264 0 1771 1 species Mycobacterium neoaurum 0 967 1795 Mycobacterium litorale species 1 0 913 758802 0 1280 1804 Mycobacterium gilvum species 1 0 110539 1067 1 Mycobacterium vanbaalenii species Mycobacterium vaccae species 1 0 1810 1119 0 1283 1800 species Mycobacterium chubuense 1 species Mycobacterium fortuitum 1 0 1766 909 1 species Mycobacterium goodii 0 1167 134601 0 3925 670516 genus 5 1 Mycobacterium abscessus species 1542 0 36809 species Mycobacterium immunogenum 1 83262 0 690 585 0 1578165 Mycobacterium saopaulense species 1 0 1774 553 1 Mycobacterium chelonae species 1520670 0 555 1 Mycobacterium stephanolepidis species 1 3 family Segniliparaceae 0 690 316606 9 37 0 286801 681 genus Segniliparus 2 1 644 0 286802 1 Segniliparus rotundus species 0 697024 569 2 no rank 0 1847725 569 8 1 2 genus Lawsonella species Lawsonella clevelandensis 1 1528099 0 561 52 1 family Corynebacteriaceae 0 1653 44268 235 0 44033 1716 950 51 1 genus Corynebacterium Corynebacterium urealyticum species 1 0 738 43771 0 1012 1072256 1 Corynebacterium uterequi species 0 821 161896 species Corynebacterium camporealensis 1 0 1652495 577 1 Corynebacterium crudilactis species 1 Corynebacterium lactis species 0 1231000 943 species Corynebacterium callunae 1 0 1721 734 0 960 108486 Corynebacterium falsenii species 1 species Corynebacterium kroppenstedtii 1 161879 0 459 Corynebacterium glaucum species 1 0 740 187491 1 species Corynebacterium deserti 0 807 1408191 0 882 1121358 Corynebacterium doosanense species 1 Corynebacterium cystitidis species 1 35757 0 411 1718 0 1606 species Corynebacterium glutamicum 1 1 Corynebacterium diphtheriae species 1717 0 692 0 42817 577 species Corynebacterium argentoratense 1 Corynebacterium aquilae species 1 0 792 203263 0 653 160386 species Corynebacterium casei 1 0 602 1050174 Corynebacterium epidermidicanis species 1 Corynebacterium terpenotabidum species 1 0 89154 789 0 169292 804 species Corynebacterium aurimucosum 1 0 558 571915 1 Corynebacterium mustelae species 1 species Corynebacterium efficiens 0 152794 1013 0 161895 585 1 Corynebacterium phocae species 0 901 401472 Corynebacterium ureicelerivorans species 1 38289 0 1630 1 species Corynebacterium jeikeium 1 species Corynebacterium maris 1006 0 575200 0 38305 1914 1 Corynebacterium vitaeruminis species 0 1404244 883 1 Corynebacterium glyciniphilum species Corynebacterium stationis species 1 0 1705 815 656 0 1697 1 species Corynebacterium ammoniagenes 0 1223514 1111 species Corynebacterium humireducens 1 456 0 35755 species Corynebacterium kutscheri 1 0 1134 191493 1 Corynebacterium sphenisci species 1 species Corynebacterium marinum 0 349751 999 0 1186 1230998 Corynebacterium frankenforstense species 1 1 [Brevibacterium] flavum species 0 845 92706 no rank 2 0 1440 2624378 species Corynebacterium sp. ATCC 6931 1 0 1487956 764 676 0 702967 1 species Corynebacterium sp. NML98-0116 504 0 1719 1 Corynebacterium pseudotuberculosis species 1 Corynebacterium atypicum species 0 191610 580 0 225326 1021 Corynebacterium halotolerans species 1 43770 0 1752 1 species Corynebacterium striatum 1 species Corynebacterium singulare 0 641 161899 0 1231 1727 Corynebacterium variabile species 1 1 species Corynebacterium testudinoris 0 136857 711 species Corynebacterium resistens 1 0 258224 568 0 1070 146827 species Corynebacterium simulans 1 species Corynebacterium flavescens 1 0 597 28028 675 0 65058 1 species Corynebacterium ulcerans 1002 0 156978 species Corynebacterium imitans 1 family Gordoniaceae 1 9 74 0 7612 85026 8 1 genus Gordonia 0 2053 7538 194 species Gordonia iterans 1 0 795 1004901 0 971 2054 1 Gordonia bronchialis species 0 2055 1165 species Gordonia terrae 1 no rank 2 2359 0 2657482 0 1423 337191 1 species Gordonia sp. KTR9 0 936 2059875 1 species Gordonia sp. YC-JH1 0 84595 1050 1 Gordonia polyisoprenivorans species species Gordonia phthalatica 1 0 1136941 1004 31 1 family Nocardiaceae 0 85025 36363 244 genus Rhodococcus 1 23 834 0 23362 1827 1 Rhodococcus opacus species 0 2916 37919 1 Rhodococcus qingshengii species 0 736 334542 0 103816 1060 1 Rhodococcus pyridinivorans species species Rhodococcus hoagii 1 0 43767 931 0 1337 132919 species Rhodococcus jostii 1 species Rhodococcus ruber 1 0 1203 1830 0 1014 1833 1 species Rhodococcus erythropolis 1 Rhodococcus rhodochrous species 0 913 1829 0 1828 897 1 species Rhodococcus fascians 0 1388 191292 1 Rhodococcus aetherivorans species no rank 12 0 192944 10133 0 1309 1033922 species Rhodococcus sp. WB1 1 1805827 0 869 species Rhodococcus sp. MTM3W5.2 1 0 559 1807790 Rhodococcus sp. BH4 species 1 0 1653479 916 Rhodococcus sp. PBTS 2 species 1 0 608 1723645 species Rhodococcus sp. 008 1 Rhodococcus sp. 2G species 1 0 855 1570939 679318 0 639 1 species Rhodococcus sp. WMMA185 0 1653478 800 species Rhodococcus sp. PBTS 1 1 1 Rhodococcus sp. YL-1 species 0 713 1045808 0 910 1727214 Rhodococcus sp. H-CA8f species 1 species Rhodococcus sp. p52 1 0 873 935199 0 1564114 1082 1 species Rhodococcus sp. B7740 0 12757 1817 227 7 1 Nocardia genus species Nocardia seriolae 1 1576 0 37332 species Nocardia cyriacigeorgica 1 135487 0 2553 1 species Nocardia nova 0 37330 1252 0 37329 2151 1 Nocardia farcinica species 2975 0 37326 species Nocardia brasiliensis 1 species Nocardia terpenica 1 0 2023 455432 0 1867 85029 9 4 1 Dietziaceae family 22 0 1858 37914 Dietzia genus 3 1 0 2617939 1002 no rank 1 0 1002 712270 species Dietzia sp. oral taxon 368 1 0 499555 834 1 species Dietzia timorensis 1 4 Kineosporiales order 0 622452 1613 1 83778 0 1612 56 3 1 family Kineosporiaceae 2 1 Kineococcus genus 0 1556 33981 18 0 1538 131568 1 species Kineococcus radiotolerans 0 1859062 363 2 no rank 363 0 262406 15 1 2 genus Thermobaculum species Thermobaculum terrenum 1 0 166501 348 101 1 phylum Tenericutes 0 544448 117558 42 42 0 108718 31969 Mollicutes class 1 97 45900 0 2085 23 1 44 Mycoplasmatales order 56 0 45877 2092 Mycoplasmataceae family 1 43 12 genus 0 2767358 16560 1 Mycoplasma fermentans species 1036 0 2115 1 Mycoplasma canis species 0 1476 29555 0 1958 2112 1 species Mycoplasma bovigenitalium 0 2094 1444 1 Mycoplasma arginini species Mycoplasma bovis species 1 0 1781 28903 0 2110 1314 1 Mycoplasma agalactiae species species Mycoplasma pullorum 1 0 48003 1432 0 2109 1177 1 species Mycoplasma synoviae Mycoplasma pulmonis species 1 0 852 2107 0 2113 1015 species Mycoplasma californicum 1 0 171284 2359 1 species Mycoplasma cynos 0 716 29553 Mycoplasma bovirhinis species 1 306 0 25743 2093 genus Mycoplasma 1 27 1 Mycoplasma putrefaciens species 0 2123 1282 0 417 984991 Mycoplasma parvum species 1 species Mycoplasma bovoculi 1 0 495 45362 0 1357 28227 Mycoplasma penetrans species 1 0 2683645 570 no rank 1 1 Mycoplasma sp. (ex Biomphalaria glabrata) species 0 1749074 570 species group 3 0 656088 6511 0 3130 2102 species Mycoplasma mycoides 1 0 2095 1597 species Mycoplasma capricolum 1 1 species Mycoplasma leachii 0 2105 1784 0 2128 211 1 Mycoplasma flocculare species 0 2104 761 1 Mycoplasma pneumoniae species 228 0 136241 species Mycoplasma haemocanis 1 species Mycoplasma hominis 1 0 2536 2098 0 50052 1615 species Mycoplasma crocodyli 1 Mycoplasma yeatsii species 1 51365 0 1878 0 2100 608 species Mycoplasma hyorhinis 1 1 Mycoplasma wenyonii species 0 225 65123 0 673 2096 1 Mycoplasma gallisepticum species 1 species Mycoplasma ovis 171632 0 120 1 Mycoplasma arthritidis species 0 2111 1053 Mycoplasma haemofelis species 1 0 29501 37 1 species Mycoplasma mobile 1610 0 2118 species Mycoplasma suis 1 344 0 57372 0 2097 533 Mycoplasma genitalium species 1 species Mycoplasma dispar 1 0 86660 455 species Mycoplasma canadense 1 0 29554 1340 Mycoplasma hyopneumoniae species 1 0 2099 578 2 0 2129 3518 genus Ureaplasma 3 1 0 1811 134821 1 Ureaplasma parvum species species Ureaplasma urealyticum 1 0 1705 2130 32 186328 0 46372 Entomoplasmatales order 1 39 14427 0 33925 31 14 1 family Entomoplasmataceae 0 4219 46238 27 1 5 Entomoplasma genus 0 74700 514 Entomoplasma freundtii species 1 1 Entomoplasma luminosum species 0 774 214888 0 81459 2323 Entomoplasma melaleucae species 1 0 581 215578 1 species Entomoplasma somnilux 302 0 46239 10177 genus Mesoplasma 8 1 Mesoplasma entomophilum species 1 1059 0 2149 1 species Mesoplasma syrphidae 225999 0 1476 0 2151 2734 1 Mesoplasma florum species 1 Mesoplasma chauliocola species 798 0 216427 1529 0 138853 species Mesoplasma lactucae 1 0 870 219745 Mesoplasma tabanidae species 1 1 Mesoplasma coleopterae species 1409 0 324078 204 0 31913 2131 family Spiroplasmataceae 24 1 genus Spiroplasma 1 23 1184 0 2132 31709 Spiroplasma taiwanense species 1 0 2145 2491 1 Spiroplasma cantharicola species 1329 0 362837 species Spiroplasma sabaudiense 1 0 1131 216944 Spiroplasma citri species 1 0 1182 2133 Spiroplasma floricola species 1 0 2024 216937 1 Spiroplasma litorale species 216942 0 1879 species Spiroplasma eriocheiris 1 1771 0 315358 2326 0 2637901 2 no rank 0 1163 1898044 species Spiroplasma sp. TU-14 1 Spiroplasma sp. NBRC 100390 species 1 0 1914410 1163 901 0 216938 1 species Spiroplasma helicoides Spiroplasma clarkii species 1 0 2139 1177 1 species Spiroplasma culicicola 0 1638 216935 0 1541 216934 1 species Spiroplasma corruscae 1 species Spiroplasma turonicum 0 216946 1636 0 2137 1222 Spiroplasma apis species 1 1 Spiroplasma syrphidicola species 0 475 216945 species Spiroplasma diminutum 1 0 216936 1225 1 species Spiroplasma kunkelii 47834 0 1408 0 1114980 1336 species Spiroplasma atrichopogonis 1 0 1563 2136 Spiroplasma monobiae species 1 species Spiroplasma chrysopicola 1 948 0 216933 2144 0 1322 1 Spiroplasma mirum species 13 1 Acholeplasmatales order 0 186329 16404 22 12 1 Acholeplasmataceae family 0 16382 2146 124 1 6 Candidatus Phytoplasma genus 0 33926 6215 251 0 892 85630 species group 1 0 37692 892 1 Candidatus Phytoplasma mali species species group 1 0 85632 1265 0 1265 59748 species Candidatus Phytoplasma australiense 1 3 species group 0 3807 85620 1 species Aster yellows witches'-broom phytoplasma 229545 0 1221 0 202462 973 species Maize bushy stunt phytoplasma 1 1 species Onion yellows phytoplasma 0 1613 100379 184 2147 0 10043 Acholeplasma genus 5 1 0 880 61635 1 species Acholeplasma brassicae 0 35623 3183 1 species Acholeplasma oculi 0 4062 38986 1 Acholeplasma palmae species 0 2148 1734 Acholeplasma laidlawii species 1 0 2799557 2745 no rank 1 0 2745 1912503 genus 1 no rank 1 0 2624196 2745 0 2745 1541959 Candidatus Izimaplasma sp. HR1 species 1 6053 0 713063 no rank 2 Tenericutes bacterium MZ-XQ species 1 0 1911683 3093 0 2960 1911684 species Tenericutes bacterium MO-XQ 1 1 719 Firmicutes phylum 7935277 0 1239 381 no rank 1 84086 0 2901 1 endosymbiont 'TC1' of Trimyema compressum species 0 2901 243899 class Clostridia 222 1 421 0 186801 6883532 1 4 Natranaerobiales order 1072 0 485256 1 family Natranaerobiaceae 1 3 9 0 485255 1071 Natranaerobius genus 2 1 18 0 1062 375928 Natranaerobius thermophilus species 1 375929 0 1044 1 38 order Thermoanaerobacterales 0 45177 68295 152 family Thermoanaerobacterales Family IV. Incertae Sedis 1 3 8 0 1690 543372 2 1 genus Mahella 0 252965 1682 7 0 1675 252966 1 species Mahella australiensis 1 19 family Thermoanaerobacteraceae 0 20908 186814 46 genus 1 1273 0 249529 species Caldanaerobacter subterraneus 1 1273 0 911092 5 0 1069 129957 Carboxydothermus genus 1 2 0 1064 129958 1 Carboxydothermus hydrogenoformans species 364 14673 0 1754 Thermoanaerobacter genus 9 1 0 46354 1847 species Thermoanaerobacter wiegelii 1 0 29323 1694 species Thermoanaerobacter brockii 1 0 496866 1694 1 Thermoanaerobacter pseudethanolicus species 0 108150 2141 Thermoanaerobacter italicus species 1 0 2636821 2957 no rank 2 0 399726 1400 species Thermoanaerobacter sp. X514 1 0 573062 1557 species Thermoanaerobacter sp. X513 1 1 species Thermoanaerobacter kivui 0 2325 1881 1 species Thermoanaerobacter mathranii 0 2095 583357 1 2 genus Thermacetogenium 140458 0 1171 26 1 species Thermacetogenium phaeum 1145 0 85874 no rank 4 0 2676 42857 7 42837 0 964 Ammonifex genus 2 1 Ammonifex degensii species 1 42838 0 957 1712 0 44260 10 1 2 Moorella genus 1 species Moorella thermoacetica 0 1525 1702 family Thermoanaerobacterales Family III. Incertae Sedis 13 1 99 0 21672 543371 21 6703 0 28895 Thermoanaerobacterium genus 3 1 species Thermoanaerobacterium xylanolyticum 1 0 29329 2875 0 1517 3807 1 Thermoanaerobacterium thermosaccharolyticum species 330 44000 0 14870 genus Caldicellulosiruptor 9 1 Caldicellulosiruptor hydrothermalis species 1 0 413888 1785 31899 0 2309 species Caldicellulosiruptor bescii 1 1 species Caldicellulosiruptor kristjanssonii 0 52765 2019 0 413889 1442 1 Caldicellulosiruptor kronotskyensis species 0 1533 44001 Caldicellulosiruptor saccharolyticus species 1 1 Caldicellulosiruptor obsidiansis species 0 717609 1990 0 1611 55205 Caldicellulosiruptor owensensis species 1 Caldicellulosiruptor lactoaceticus species 1 0 52766 1851 0 227387 755 family 2 2 0 227388 755 genus Thermodesulfobium 2 1 0 753 184064 species Thermodesulfobium narugense 1 0 186802 6825802 22341 1 164 order Clostridiales 0 543349 3995 12 1 3 Symbiobacteriaceae family 1 2 Symbiobacterium genus 3983 0 2733 17 species Symbiobacterium thermophilum 1 0 2734 3966 10 no rank 0 538999 170354 1 genus 80076 0 2717089 0 2086584 80076 1 Mordavella sp. Marseille-P3756 species 0 79775 1392389 856 2 1 genus Intestinimonas Intestinimonas butyriciproducens species 1 0 78919 1297617 543314 0 8225 14 4 1 Clostridiales Family XIII. Incertae Sedis family 3546 0 143393 [Eubacterium] sulci species 1 Mogibacterium genus 1 2 24 0 86331 4665 1 Mogibacterium diversum species 4641 0 114527 Clostridiales Family XVII. Incertae Sedis family 1 3 19 0 2278 539000 28 0 2259 73918 Thermaerobacter genus 1 2 species Thermaerobacter marianensis 1 0 2231 73919 Ruminococcaceae family 13 1 821 541000 0 2199862 1890281 0 5 genus Herbivorax 1 Ruminococcus genus 3 1 217 0 1263 57849 1 species Ruminococcus bicirculans 0 41154 1160721 1264 0 16478 Ruminococcus albus species 1 1 2 Faecalibacterium genus 0 216851 2010192 1313 Faecalibacterium prausnitzii species 1 0 2008879 853 0 14282 253238 27 2 1 Ethanoligenens genus 253239 0 14255 1 Ethanoligenens harbinense species no rank 1 2305133 0 10746 0 1572656 10746 1 Ruminococcaceae bacterium CPB6 species 2 1 Flavonifractor genus 100690 0 946234 167 Flavonifractor plautii species 1 292800 0 100523 0 552397 5277 no rank 1 [Clostridium] cellulosi species 1 0 29343 5277 3869 0 31984 13 3 1 Heliobacteriaceae family genus Heliobacterium 2 1 124 0 3856 2697 0 3732 35701 species Heliobacterium modesticaldum 1 family 12 0 2304686 53603 genus 3 12161 0 2304692 species [Clostridium] clariflavum 1 4322 0 288965 0 4808 1515 1 species Ruminiclostridium thermocellum Herbivorax saccincola species 1 0 1677857 3031 0 2725 2304691 1 genus 1510 0 2725 1 species [Clostridium] stercorarium Mageeibacillus genus 2 1 4 1637257 0 3729 884684 0 3725 1 Mageeibacillus indolicus species no rank 1 0 2305130 23428 Ruminiclostridium sp. KB18 species 1 23428 0 1834198 0 2304693 4013 1 genus species [Clostridium] thermosuccinogenes 1 0 4013 84032 Fastidiosipila genus 2 1 7 0 2456 236752 236753 0 2449 1 Fastidiosipila sanguinis species 1 2 Ruminiclostridium genus 1508657 0 5091 491 species [Clostridium] cellulolyticum 1 0 4600 1521 0 268540 31979 812 1 41 family Clostridiaceae Mordavella genus 1 0 255 1981033 Clostridium genus 30 1 1529 0 1485 250720 10248 0 1520 species Clostridium beijerinckii 1 0 7535 217159 1 Clostridium carboxidivorans species 1 species Clostridium taeniosporum 0 394958 5563 1491 0 36530 Clostridium botulinum species 1 1 species Clostridium bornimense 8407 0 1216932 2 no rank 24648 0 2614128 1 species Clostridium sp. BNL1100 0 4647 755731 Clostridium sp. SY8519 species 1 0 20001 1042156 Clostridium tyrobutyricum species 1 0 4252 1519 Clostridium formicaceticum species 1 0 1497 2620 0 6191 1494 species Clostridium cochlearium 1 1 Clostridium argentinense species 0 7049 29341 0 12572 1561 1 species Clostridium baratii 4600 0 84023 1 species Clostridium autoethanogenum Clostridium scatologenes species 1 0 6795 1548 0 5581 1488 1 Clostridium acetobutylicum species species Clostridium novyi 1 0 1542 5758 0 5501 238834 Clostridium estertheticum species 1 0 1501 9977 species Clostridium pasteurianum 1 Clostridium sporogenes species 1 0 1509 6172 0 1493 8551 1 species Clostridium cellulovorans 46867 0 5886 Clostridium chauvoei species 1 4644 0 1538 Clostridium ljungdahlii species 1 1 Clostridium aceticum species 0 84022 2262 0 1534 7191 species Clostridium kluyveri 1 1 Clostridium saccharobutylicum species 0 8719 169679 0 11507 1502 species Clostridium perfringens 1 1513 0 8223 1 Clostridium tetani species species Clostridium saccharoperbutylacetonicum 1 0 11886 36745 0 10323 1492 Clostridium butyricum species 1 27 0 114627 4930 Alkaliphilus genus 1 3 1 Alkaliphilus metalliredigens species 0 2693 208226 species Alkaliphilus oremlandii 1 0 461876 2210 289 0 7118 49082 genus Candidatus Arthromitus 4 1 3 no rank 0 2638829 6829 0 1508644 1967 species Candidatus Arthromitus sp. SFB-mouse-NL 1 Candidatus Arthromitus sp. SFB-mouse species 1 1904 0 49118 Candidatus Arthromitus sp. SFB-rat-Yit species 1 0 2958 1041504 390805 0 4705 27 2 1 genus Geosporobacter 1 Geosporobacter ferrireducens species 0 1424294 4678 27 1 Lachnospiraceae family 3857449 0 186803 2428 2 1 genus Anaerotignum 0 2039240 5914 11 1 species Anaerotignum propionicum 0 5903 28446 1 4 genus Lachnoclostridium 0 107343 1506553 514 1 species Lachnoclostridium phytofermentans 0 12570 66219 59353 0 1871021 1 Lachnoclostridium phocaeense species no rank 1 0 2608895 34906 Lachnoclostridium sp. YL32 species 1 0 34906 1834196 1 genus 0 2569097 119468 1 species [Eubacterium] hallii 0 119468 39488 0 572511 96168 163 3 1 genus Blautia 2648079 0 34610 1 no rank 0 34610 1796616 Blautia sp. YL58 species 1 1 Blautia hansenii species 0 61395 1322 830 0 36752 51 1 3 Butyrivibrio genus 1 species Butyrivibrio proteoclasticus 17641 0 43305 species Butyrivibrio hungatei 1 0 19060 185008 Cellulosilyticum genus 2 1 8 0 698776 6964 1 species Cellulosilyticum lentocellum 0 29360 6956 0 290704 841 43 1 2 genus Roseburia 0 290661 301301 Roseburia hominis species 1 234 0 154483 207244 Anaerostipes genus 2 1 species Anaerostipes hadrus 1 0 649756 154249 genus 1 0 28050 388017 0 39485 388017 1 [Eubacterium] eligens species genus 1 0 82628 2719313 208479 0 82628 species [Clostridium] bolteae 1 7 0 1663717 8404 Herbinix genus 2 1 1679721 0 8397 1 species Herbinix luporum 1 genus 2719231 0 29823 0 84030 29823 1 species [Clostridium] saccharolyticum 186928 0 2528353 no rank 2 0 2505657 39491 1 species [Eubacterium] rectale 0 22696 712991 1 Lachnospiraceae bacterium oral taxon 500 species 754 0 124788 186804 family Peptostreptococcaceae 12 1 0 44259 2998 9 2 1 Filifactor genus species Filifactor alocis 1 0 2989 143361 352 0 103467 1870884 Clostridioides genus 2 1 0 103115 1496 1 Clostridioides difficile species 2 1 genus Acetoanaerobium 0 186831 2710 11 1 species Acetoanaerobium sticklandii 0 1511 2699 0 1411023 4065 no rank 1 1 species Peptostreptococcaceae bacterium oral taxon 929 0 4065 2081703 5 0 2756 1481960 genus Peptoclostridium 2 1 1 Peptoclostridium acidaminophilum species 1731 0 2751 2 1 Paeniclostridium genus 1849828 0 8038 9 1 Paeniclostridium sordellii species 0 1505 8029 Christensenellaceae family 1 3 72 0 28906 990719 2 1 genus Christensenella 0 28834 990721 709 Christensenella massiliensis species 1 1805714 0 28125 0 68298 1314 2 family 0 129001 653 1 genus 1 Syntrophothermus lipocalidus species 0 86170 653 genus 1 862 0 661 Syntrophomonas wolfei species 1 0 863 661 205 186807 0 40601 family Peptococcaceae 1 29 0 8818 36853 91 1 5 genus Desulfitobacterium 0 233055 1655 species Desulfitobacterium dichloroeliminans 1 species Desulfitobacterium dehalogenans 1 0 1938 36854 1 species Desulfitobacterium hafniense 0 49338 3512 Desulfitobacterium metallireducens species 1 142877 0 1622 4 1 genus Desulfosporosinus 0 79206 6069 66 1 species Desulfosporosinus orientis 0 2172 1563 1 species Desulfosporosinus acidiphilus 0 1713 885581 Desulfosporosinus meridiei species 1 0 2118 79209 1 genus 0 1671 2282742 58138 0 1671 1 species Desulfotomaculum acetoxidans 1 2 Candidatus Desulforudis genus 0 471826 1480 19 0 1461 471827 1 species Candidatus Desulforudis audaxviator genus 1 0 2282740 1762 1 species Desulfotomaculum gibsoniae 0 1762 102134 0 278993 1110 1 1 2 Thermincola genus 863643 0 1109 Thermincola potens species 1 Desulfotomaculum genus 5 1 89 0 1562 6512 1833852 0 1630 1 Desulfotomaculum ferrireducens species 1 Desulfotomaculum nigrificans species 1471 0 1565 species Desulfotomaculum ruminis 1 1860 0 1564 0 59610 1462 species Desulfotomaculum reducens 1 1 2 Dehalobacterium genus 3559 0 51514 18 51515 0 3541 1 species Dehalobacterium formicoaceticum 4 0 2072 51196 genus Syntrophobotulus 1 2 0 51197 2068 species Syntrophobotulus glycolicus 1 1 4 genus Dehalobacter 7343 0 56112 87 2 no rank 0 2635733 4887 1 Dehalobacter sp. DCA species 2353 0 1147129 0 1131462 2534 1 Dehalobacter sp. CF species species Dehalobacter restrictus 1 0 55583 2369 Eubacteriaceae family 5 1 40 0 20205 186806 0 16456 1730 1006 2 1 Eubacterium genus 1 species Eubacterium limosum 15450 0 1736 1 2 Acetobacterium genus 33951 0 3709 13 0 3696 33952 1 Acetobacterium woodii species 1 3 Oscillospiraceae family 29975 0 216572 8 99 0 459786 29967 genus Oscillibacter 2 1 Oscillibacter valericigenes species 1 0 351091 29868 11 0 8523 53433 Halanaerobiales order 1 11 1 6 Halanaerobiaceae family 972 0 5059 20 1 2 genus Halothermothrix 0 32636 1221 12 0 31909 1209 1 species Halothermothrix orenii 31 3818 0 2330 genus Halanaerobium 3 1 species Halanaerobium praevalens 1 0 2420 2331 1 species Halanaerobium hydrogeniformans 0 656519 1367 Halobacteroidaceae family 4 1 12 0 53434 3453 genus 1 0 28186 2088 0 2088 28187 1 species Acetohalobium arabaticum 0 42417 1353 5 2 1 genus Halobacteroides 42422 0 1348 species Halobacteroides halobius 1 4 order 2537 0 2770089 1566 0 2770092 2 family 1 2 Tepidanaerobacter genus 0 499228 1566 5 0 499229 1561 1 species Tepidanaerobacter acetatoxydans 0 2770093 971 family 2 Thermosediminibacter genus 2 1 6 971 0 291988 species Thermosediminibacter oceani 1 291990 0 965 0 526524 31995 20 11 1 Erysipelotrichia class 526525 0 31975 18 1 10 Erysipelotrichales order 0 128827 31957 101 9 1 Erysipelotrichaceae family Turicibacter genus 1 2 25 0 191303 7447 7422 0 2638206 1 no rank 1 Turicibacter sp. H121 species 0 7422 1712675 no rank 1 0 544447 11988 1 Erysipelotrichaceae bacterium I46 species 11988 0 1834207 genus Faecalibaculum 1 2 17 7896 0 1729679 1 Faecalibaculum rodentium species 0 1702221 7879 3 1 Erysipelothrix genus 0 1647 4525 54 Erysipelothrix larvae species 1 0 1514105 2557 1648 0 1914 species Erysipelothrix rhusiopathiae 1 0 34306 1737404 51 1 19 class Tissierellia 1 16 order Tissierellales 1737405 0 32189 959 family Gottschalkiaceae 1 3 8 0 5517 2042895 9 5509 0 1505664 genus Gottschalkia 2 1 0 5500 1556 species Gottschalkia acidurici 1 4878 0 1570339 25713 family Peptoniphilaceae 12 1 genus Murdochiella 2 1 4 0 6587 1161127 Murdochiella vaginalis species 1 0 1852373 6583 1 2 genus Finegoldia 0 150022 3490 48 species Finegoldia magna 1 0 3442 1260 1 2 genus Peptoniphilus 0 162289 2292 13 1 no rank 0 2279 2637196 Peptoniphilus sp. ING2-D1G species 1 0 2279 1912856 Parvimonas genus 2 1 43 0 543311 3968 Parvimonas micra species 1 0 3925 33033 3 1 genus Anaerococcus 0 4498 165779 7 0 33034 2366 1 Anaerococcus prevotii species 2125 0 1870984 1 Anaerococcus mediterraneensis species 2066 0 1737407 2 no rank 0 2066 1582879 39 1 2 genus Ezakiella 0 2027 1852374 1 species Ezakiella massiliensis 427 1 class Bacilli 835428 0 91061 447 1 164 order Lactobacillales 0 400803 186826 5952 0 7759 186827 6 1 8 Aerococcaceae family Aerococcus genus 7 1 118 0 7753 1375 1 species Aerococcus viridans 0 1377 889 0 985 119206 1 species Aerococcus sanguinicola Aerococcus christensenii species 1 0 87541 1369 1 Aerococcus urinaeequi species 0 51665 1775 species Aerococcus urinaehominis 1 0 128944 679 0 1376 1938 Aerococcus urinae species 1 18 0 186828 12056 family Carnobacteriaceae 1 11 3 1 Jeotgalibaca genus 2307 0 1470540 11 0 985 708126 species Jeotgalibaca dankookensis 1 0 2621505 1311 no rank 1 1 Jeotgalibaca sp. PTS2502 species 1903686 0 1311 2 1 genus Marinilactibacillus 0 2446 191769 7 0 2632303 2439 no rank 1 1 species Marinilactibacillus sp. 15R 1911586 0 2439 Carnobacterium genus 1 5 188 7285 0 2747 Carnobacterium maltaromaticum species 1 3021 0 2751 1 Carnobacterium inhibens species 0 147709 1318 2 no rank 0 2758 257487 Carnobacterium sp. CP1 species 1 0 1564681 1148 0 208596 1610 1 species Carnobacterium sp. 17-4 1 no rank 263855 0 1444 Lactobacillales bacterium species 1 1444 0 1993866 360 33958 0 81097 Lactobacillaceae family 58 1 0 1918 2767885 genus 2 0 1025 1599 1 Lactobacillus sakei species Lactobacillus curvatus species 1 0 28038 893 2087 0 2767886 genus 3 0 267363 584 1 Lactobacillus zymae species 1 species Lactobacillus koreensis 0 637971 603 Lactobacillus brevis species 1 1580 0 900 11820 0 2767887 4 genus 1 Lactobacillus salivarius species 0 4450 1624 species Lactobacillus acidipiscis 1 0 89059 835 1623 0 4987 1 Lactobacillus ruminis species 0 1548 1601 1 species Lactobacillus agilis genus 6 0 9065 2767879 1 Lactobacillus allii species 0 1913 1847728 0 1910 392416 1 species Lactobacillus crustorum Lactobacillus farciminis species 1 0 1612 1751 0 1602 1513 1 species Lactobacillus alimentarius Lactobacillus ginsenosidimutans species 1 0 1007676 881 0 1074467 1097 species Lactobacillus heilongjiangensis 1 1 genus 0 671 2767892 0 671 240427 1 species Lactobacillus paracollinoides 0 2784 2767876 1 genus Lactobacillus amylophilus species 1 0 1603 2784 2742598 0 4334 genus 3 0 97478 1085 Lactobacillus mucosae species 1 0 1071 1613 species Lactobacillus fermentum 1 1 species Lactobacillus reuteri 1598 0 2178 0 2767877 573 1 genus 0 148814 573 species Lactobacillus kunkeei 1 0 2767893 2099 genus 3 0 712 1138822 species Lactobacillus curieae 1 0 847 1581 1 species Lactobacillus buchneri 0 152331 540 species Lactobacillus parabuchneri 1 genus 1 0 2767890 1311 1 species Lactobacillus hokkaidonensis 1311 0 1193095 0 4970 2759736 genus 3 1 species Lactobacillus rhamnosus 47715 0 1430 1 species Lactobacillus casei 2076 0 1582 species Lactobacillus paracasei 1 0 1464 1597 2 genus 0 1860 2767881 1 species Lactobacillus lindneri 0 53444 1084 1 species Lactobacillus sanfranciscensis 0 776 1625 0 2442 2767842 3 genus Lactobacillus pentosus species 1 0 1589 741 1 species Lactobacillus plantarum 0 1590 1417 Lactobacillus paraplantarum species 1 284 0 60520 Pediococcus genus 1 6 14 0 1253 7311 0 1670797 1609 species group 1 0 1609 1254 Pediococcus acidilactici species 1 1 Pediococcus inopinatus species 0 729 114090 0 2017 1255 1 species Pediococcus pentosaceus 187452 0 1414 species Pediococcus claussenii 1 0 1528 51663 1 species Pediococcus damnosus 0 2767889 1858 2 genus species Lactobacillus backii 1 0 722 375175 0 1610 1136 species Lactobacillus coryniformis 1 1578 0 25634 1474 1 16 genus Lactobacillus species Lactobacillus johnsonii 1 0 33959 3579 1596 0 2982 Lactobacillus gasseri species 1 no rank 4 0 2514 2620435 0 423 2099789 1 Lactobacillus sp. CBA3606 species 1 species Lactobacillus sp. CBA3605 2099788 0 388 1545702 0 1331 1 species Lactobacillus sp. wkB8 0 2108362 372 1 Lactobacillus sp. D1501 species 1 Lactobacillus jensenii species 0 1043 109790 52242 0 1309 species Lactobacillus gallinarum 1 1 species Lactobacillus acidophilus 0 1579 1534 0 1587 2356 1 species Lactobacillus helveticus 0 1604 1732 species Lactobacillus amylovorus 1 species Lactobacillus acetotolerans 1 0 1600 1507 species Lactobacillus amylolyticus 1 0 1147 83683 1 Lactobacillus delbrueckii species 0 1584 3583 0 267818 874 species Lactobacillus kefiranofaciens 1 0 51686 81852 112 1 19 family Enterococcaceae 4 0 51668 2894 Tetragenococcus genus 2 1 0 51669 2890 1 Tetragenococcus halophilus species 12 1 Enterococcus genus 1350 0 41471 2384 Enterococcus hirae species 1 0 1354 2476 species Enterococcus faecalis 1 7472 0 1351 species Enterococcus mundtii 1 0 1649 53346 1352 0 18251 1 Enterococcus faecium species species Enterococcus wangshanyuanii 1 0 2543 2005703 2608891 0 2513 3 no rank 0 756 2060306 1 species Enterococcus sp. FDAARGOS_163 species Enterococcus sp. FDAARGOS_375 1 2060307 0 1073 0 2057791 684 species Enterococcus sp. CR-Ec1 1 Enterococcus durans species 1 53345 0 2161 0 1169 417368 species Enterococcus thailandicus 1 species Enterococcus casseliflavus 1 0 853 37734 33969 0 2270 genus 1 1 Melissococcus plutonius species 0 33970 2270 3 1 Vagococcus genus 0 2737 4939 10 633807 0 2222 species Vagococcus penaei 1 2707 0 519472 species Vagococcus teuberi 1 49 1 Streptococcaceae family 0 229113 1300 6272 Lactococcus genus 5 1 22 1357 0 13183 0 1364 2125 1 species Lactococcus piscium 1623 0 1363 Lactococcus garvieae species 1 Lactococcus lactis species 1 7397 0 1358 1366 0 2016 1 Lactococcus raffinolactis species 1301 0 209658 5530 1 43 genus Streptococcus 0 59310 781 species Streptococcus macedonicus 1 986 0 1814128 Streptococcus halotolerans species 1 1 species Streptococcus pasteurianus 0 197614 4600 1 Streptococcus himalayensis species 0 561 1888195 1 Streptococcus cristatus species 0 45634 1113 1 Streptococcus equinus species 0 1335 3607 0 1309 1994 species Streptococcus mutans 1 0 2701 1308 1 Streptococcus thermophilus species 1 Streptococcus merionis species 0 400065 881 0 2693 1302 1 Streptococcus gordonii species species Streptococcus agalactiae 1 0 1311 26411 119603 0 2617 species group 2 species Streptococcus dysgalactiae 1 0 1012 1334 0 1336 1605 species Streptococcus equi 1 1 Streptococcus parasanguinis species 0 1318 7488 0 2608887 15389 no rank 7 1 Streptococcus sp. NPS 308 species 0 1902136 737 1 species Streptococcus sp. 'group B' 0 1319 1269 0 1839799 6893 1 Streptococcus sp. FDAARGOS_192 species 1 species Streptococcus sp. I-P16 0 1156433 2071 species Streptococcus sp. oral taxon 431 1 0 712633 645 Streptococcus sp. I-G2 species 1 0 2144 1156431 0 1759399 1630 1 Streptococcus sp. A12 species 1 Streptococcus pluranimalium species 0 1170 82348 5172 0 150055 Streptococcus lutetiensis species 1 0 5607 102684 Streptococcus infantarius species 1 0 1307 40191 species Streptococcus suis 1 Streptococcus pneumoniae species 1 0 2025 1313 1 Streptococcus iniae species 1346 0 2384 1 Streptococcus pantholopis species 0 1811193 936 1 Streptococcus uberis species 1243 0 1349 0 1303 3532 1 Streptococcus oralis species 1 Streptococcus acidominimus species 0 2440 1326 0 2216 1348 1 Streptococcus parauberis species 0 257758 688 Streptococcus pseudopneumoniae species 1 3 species group 0 33794 671232 1 Streptococcus anginosus species 0 1328 23425 0 1338 2674 Streptococcus intermedius species 1 species Streptococcus constellatus 1 76860 0 7695 species Streptococcus mitis 1 0 28037 3129 1 species Streptococcus salivarius 0 1304 19496 0 2467 315405 1 species Streptococcus gallolyticus 1314 0 2704 Streptococcus pyogenes species 1 species Streptococcus marmotae 1 0 1380 1825069 1 Streptococcus sanguinis species 0 1305 1732 17 1 Leuconostocaceae family 81850 0 11696 13 51 0 1243 6861 genus Leuconostoc 1 9 0 136609 1286 Leuconostoc kimchii species 1 Leuconostoc citreum species 1 0 264 33964 0 879 1252 Leuconostoc carnosum species 1 species Leuconostoc gelidum 1 1289 0 1244 0 255248 567 1 species Leuconostoc garlicum 1 species Leuconostoc mesenteroides 0 1405 1245 2685106 0 765 1 no rank 0 979982 765 Leuconostoc sp. C2 species 1 Leuconostoc lactis species 1 1246 0 355 0 46255 3829 328 1 6 genus Weissella 1 species Weissella cibaria 0 137591 466 1 species Weissella koreensis 0 999 165096 1 Weissella paramesenteroides species 0 781 1249 759620 0 455 1 Weissella ceti species species Weissella jogaejeotgali 1 0 800 1631871 genus 1 993 0 46254 1 Oenococcus oeni species 993 0 1247 order Bacillales 1 262 1011 0 1385 434178 9 0 1312 186824 Thermoactinomycetaceae family 4 1 2 1 genus Novibacillus 0 1257 1677050 44 0 1471761 1213 1 Novibacillus thermophilus species 46 0 292635 1 Laceyella genus 2 0 186821 1592 Sporolactobacillaceae family 1 2 1 no rank 0 1590 663587 1 [Bacillus] selenitireducens species 0 1590 85683 no rank 8 0 7445 539002 0 3227 539738 1 no rank 1 genus 0 1378 3227 0 2624949 3227 1 no rank 0 1785995 3227 species Gemella sp. oral taxon 928 1 539742 0 4218 no rank 7 1 7 genus Exiguobacterium 0 4218 33986 142 1 species Exiguobacterium antarcticum 785 0 132920 0 2644629 2538 4 no rank 1399115 0 563 Exiguobacterium sp. MH3 species 1 species Exiguobacterium sp. U13-1 1 0 1849031 680 628 0 1224749 1 species Exiguobacterium sp. ZWU0009 0 360911 667 1 Exiguobacterium sp. AT1b species 0 753 332410 species Exiguobacterium sibiricum 1 family Staphylococcaceae 42 1 1777 0 74586 90964 4 1 Macrococcus genus 0 5452 69965 110 1 Macrococcus canis species 1855823 0 1166 no rank 1 0 2428 2619255 0 1898474 2428 1 Macrococcus sp. IME1552 species species Macrococcus caseolyticus 1 0 1748 69966 genus Auricoccucs 1 2 21 0 1641 2005363 Auricoccus indicus species 1 1849491 0 1620 1255 64598 0 1279 Staphylococcus genus 1 33 Staphylococcus pasteuri species 1 0 3952 45972 1 no rank 0 91994 1469 1469 0 1715860 Staphylococcus sp. AntiMn-1 species 1 1 Staphylococcus nepalensis species 1867 0 214473 Staphylococcus equorum species 1 0 246432 2005 1 species Staphylococcus xylosus 0 1288 3036 species Staphylococcus capitis 1 0 29388 1564 Staphylococcus simulans species 1 0 1763 1286 Staphylococcus cohnii species 1 0 29382 1576 155085 0 641 1 Staphylococcus lutrae species 0 1294 734 1 species Staphylococcus muscae 0 1296 2170 1 species Staphylococcus sciuri 0 2183 1290 Staphylococcus hominis species 1 Staphylococcus argenteus species 1 0 2076 985002 0 985762 842 1 Staphylococcus agnetis species 1283 0 1967 species Staphylococcus haemolyticus 1 0 2059 308354 1 Staphylococcus simiae species 0 2889 28035 Staphylococcus lugdunensis species 1 1 species Staphylococcus pettenkoferi 0 170573 1021 0 6738 1280 1 Staphylococcus aureus species 1 species Staphylococcus warneri 1292 0 2116 1 Staphylococcus kloosii species 0 1159 29384 0 283734 1776 species Staphylococcus pseudintermedius 1 Staphylococcus epidermidis species 1 3823 0 1282 species Staphylococcus hyicus 1 1284 0 909 0 1232 1295 1 Staphylococcus schleiferi species Staphylococcus succinus species 1 0 1481 61015 2344 0 643214 species Staphylococcus stepanovicii 1 1 species Staphylococcus felis 0 46127 1690 Staphylococcus condimenti species 1 0 1767 70255 1 Staphylococcus piscifermentans species 0 1436 70258 0 29385 1488 species Staphylococcus saprophyticus 1 Staphylococcus carnosus species 1 0 1281 1570 Salinicoccus genus 2 1 20 0 1118 45669 species Salinicoccus halodurans 1 0 407035 1098 66 0 186823 9604 Alicyclobacillaceae family 9 1 3 1 Kyrpidia genus 0 2102 1129704 67 0 33943 1057 Kyrpidia tusciae species 1 1 Kyrpidia sp. EA-1 species 0 2055160 978 37 29330 0 2479 genus Alicyclobacillus 1 2 1 species Alicyclobacillus acidocaldarius 0 405212 2442 3 1 Tumebacillus genus 0 4957 432330 35 1714 0 1214604 1 Tumebacillus algifaecis species 1 Tumebacillus avium species 0 3208 1903704 264 0 186822 96475 family Paenibacillaceae 46 1 979 0 84777 44249 Paenibacillus genus 36 1 0 1571 1464 1 species Paenibacillus larvae 1616788 0 2301 1 Paenibacillus bovis species 1 Paenibacillus ihbetae species 1870820 0 2275 species Paenibacillus durus 1 0 44251 4325 1 species Paenibacillus swuensis 0 1702 1178515 0 1656 1763538 1 Paenibacillus crassostreae species 169760 0 3100 1 species Paenibacillus stellifer 0 162209 1606 1 species Paenibacillus naphthalenovorans 0 414771 2872 1 species Paenibacillus donghaensis 0 4579 61624 1 Paenibacillus mucilaginosus species 0 1126833 2165 1 Paenibacillus beijingensis species 0 1462996 2446 Paenibacillus yonginensis species 1 2508 0 365617 species Paenibacillus sabinae 1 Paenibacillus borealis species 1 0 2978 160799 1 species Paenibacillus polymyxa 5234 0 1406 species Paenibacillus terrae 1 1481 0 159743 0 1377 172713 Paenibacillus kribbensis species 1 species Paenibacillus peoriae 1 0 1639 59893 13 no rank 0 28874 185978 1 species Paenibacillus sp. BIHB4019 2056 0 1870819 0 2121 1695218 1 Paenibacillus sp. 32O-W species 1 species Paenibacillus sp. FSL R5-0912 0 1536771 3029 species Paenibacillus sp. JDR-2 1 0 324057 2481 0 1429 1566358 1 Paenibacillus sp. IHBB 10380 species 0 1536769 3226 1 Paenibacillus sp. FSL P4-0081 species 0 1536773 2616 Paenibacillus sp. FSL R7-0331 species 1 0 481743 2207 Paenibacillus sp. Y412MC10 species 1 0 2069255 1352 1 species Paenibacillus sp. lzh-N1 Paenibacillus sp. FSL R7-0273 species 1 0 1536772 3133 1 Paenibacillus sp. FSL R5-0345 species 0 1572 1536770 0 1536774 2311 1 Paenibacillus sp. FSL H7-0357 species 1 Paenibacillus sp. FSL H7-0737 species 1341 0 1536775 0 528191 1967 Paenibacillus xylanexedens species 1 0 1474 189426 species Paenibacillus odorifer 1 1 species group 0 2044880 2891 0 483937 2891 Paenibacillus riograndensis species 1 0 2777 189425 Paenibacillus graminis species 1 3 no rank 0 85151 2619 55079 0 2619 140 1 3 genus Aneurinibacillus no rank 1 1215 0 2642329 1215 0 1450761 1 Aneurinibacillus sp. XH2 species 1264 0 1500254 1 Aneurinibacillus soli species 0 5253 55080 25 1 4 Brevibacillus genus 0 1393 1793 1 species Brevibacillus brevis 1 species Brevibacillus formosus 0 54913 1262 species Brevibacillus laterosporus 1 0 2173 1465 0 3562 76632 36 1 2 Thermobacillus genus species Thermobacillus composti 1 0 377615 3526 28 0 16385 186820 family Listeriaceae 1 8 6 1 genus Listeria 0 14930 1637 198 0 2414 1643 1 Listeria welshimeri species 1 species Listeria innocua 0 1642 1923 1 Listeria monocytogenes species 0 1639 4915 1638 0 3063 1 Listeria ivanovii species 2417 0 1640 species Listeria seeligeri 1 genus 1 0 1427 2755 1 Brochothrix thermosphacta species 0 1427 2756 0 186818 27986 90 1 26 family Planococcaceae 143 0 1372 11689 genus Planococcus 1 12 0 200991 973 species Planococcus rifietoensis 1 414778 0 631 1 Planococcus donghaensis species 1 species Planococcus plakortidis 1038856 0 776 1 species Planococcus halocryophilus 940 0 1215089 0 1169 1302659 Planococcus sp. L10.15 species 1 0 2414 192421 1 species Planococcus maritimus 0 915 1374 1 Planococcus kocurii species 1 species Planococcus faecalis 0 910 1598147 no rank 2 0 1560 2662419 Planococcus sp. MB-3u-03 species 1 0 2058136 898 1526927 0 662 1 Planococcus sp. PAMC 21323 species 1 Planococcus antarcticus species 161360 0 1258 1226 0 648802 genus 1 Rummeliibacillus stabekisii species 1 0 1226 241244 genus Solibacillus 1 3 5 0 648800 3760 species Solibacillus silvestris 1 0 2448 76853 0 1307 2637870 1 no rank 1307 0 2048654 1 Solibacillus sp. R5-41 species 32 0 157226 1814 genus Jeotgalibacillus 1 2 Jeotgalibacillus malaysiensis species 1 0 1782 1508404 Kurthia genus 2 1 10 0 1649 2027 1 no rank 0 2017 2644826 0 2017 1750719 1 species Kurthia sp. 11kri321 46 7380 0 1569 genus Sporosarcina 1 5 0 1476 1139 species Sporosarcina psychrophila 1 0 3112 1571 1 species Sporosarcina ureae 2 no rank 0 3083 2647733 1930546 0 1508 Sporosarcina sp. P37 species 1 0 1930764 1575 1 Sporosarcina sp. P33 species 116 1 Bacillaceae family 197782 0 186817 635 genus Halobacillus 3 1 3 0 45667 2117 1 species Halobacillus mangrovi 999 0 402384 0 1570 1115 1 Halobacillus halophilus species 1630 0 1055323 1 genus 1 species Aeribacillus pallidus 0 1630 33936 0 150247 6257 43 1 6 genus Anoxybacillus 0 2392 2639704 2 no rank 1172 0 1490057 Anoxybacillus sp. B7M1 species 1 1490052 0 1220 Anoxybacillus sp. B2M1 species 1 0 1493 33934 1 Anoxybacillus flavithermus species Anoxybacillus amylolyticus species 1 0 294699 1144 Anoxybacillus gonensis species 1 0 198467 1185 125 0 3280 1329200 Fictibacillus genus 1 3 0 1289 1221500 1 species Fictibacillus phosphorivorans species Fictibacillus arsenicus 1 0 255247 1866 genus 2 0 4556 2675229 0 3249 1478 Bacillus simplex species 1 0 264697 1307 Bacillus muralis species 1 0 3567 182709 genus 1 0 182710 3567 Oceanobacillus iheyensis species 1 58 1 genus Bacillus 0 1386 123210 4347 1 species Bacillus horikoshii 0 2304 79883 0 1664069 1893 1 Bacillus glycinifermentans species 1792192 0 1429 species group 1 293387 0 1429 1 Bacillus altitudinis species 1 Bacillus aryabhattai species 1289 0 412384 1 species Bacillus smithii 0 1357 1479 1 Bacillus methanolicus species 0 1471 1534 1413 0 2622 Bacillus cellulosilyticus species 1 species Bacillus endophyticus 1 0 135735 2700 species group 10 0 86661 43827 1 Bacillus anthracis species 0 1654 1392 1 Bacillus mycoides species 0 5319 1405 Bacillus toyonensis species 1 0 1719 155322 0 580165 2307 Bacillus cytotoxicus species 1 3 no rank 0 5257 2750818 Bacillus sp. FDAARGOS_235 species 1 0 1839798 2292 0 1232 1892404 1 species Bacillus sp. ABP14 0 2053832 1733 species Bacillus sp. HBCD-sjtu 1 1 species Bacillus thuringiensis 0 12707 1428 0 1053 658666 1 species Bacillus bombysepticus 0 13811 1396 1 Bacillus cereus species 14977 0 185979 19 no rank 0 629 1127744 1 species Bacillus sp. JS 0 1516 1827146 Bacillus sp. IHB B 7164 species 1 0 1837130 1271 species Bacillus sp. FJAT-14266 1 1 species Bacillus sp. LM 4-2 0 1628753 310 0 2049935 135 1 Bacillus sp. Lzh-5 species species Bacillus sp. MD-5 1 0 609 2009331 1 species Bacillus sp. 275 0 1941347 560 563169 0 630 1 species Bacillus sp. SJ-10 0 575 1446792 Bacillus sp. Pc3 species 1 1 species Bacillus sp. OxB-1 0 940 98228 1040 0 1856406 species Bacillus sp. H15-1 1 1 Bacillus sp. 1s-1 species 0 1039 2026248 1 species Bacillus sp. 1NLA3E 666686 0 1558 1409 0 287 Bacillus sp. (in: Bacteria) species 1 0 328 1574141 1 Bacillus sp. YP1 species 1 species Bacillus sp. BH072 181 0 1570330 Bacillus sp. SDLI1 species 1 0 1774743 709 1604 0 1565991 1 Bacillus sp. X1(2014) species 1056 0 756828 1 species Bacillus sp. WP8 0 33932 2518 Bacillus cohnii species 1 3086 0 1398 species Bacillus coagulans 1 species Bacillus megaterium 1 0 1404 4248 species Bacillus beveridgei 1 0 632773 1670 1 species Bacillus xiamenensis 0 1177 1178537 1 species Bacillus infantis 0 2326 324767 species Bacillus gibsonii 1 0 419 79881 0 2010 561879 1 Bacillus safensis species 1 Bacillus pumilus species 1408 0 4483 0 19604 653685 9 species group 1480 0 1452 Bacillus atrophaeus species 1 species Bacillus subtilis 1 0 7011 1423 3 species subgroup 0 1938374 6370 species Bacillus siamensis 1 0 759 659243 Bacillus velezensis species 1 0 492670 2769 0 1390 2842 1 Bacillus amyloliquefaciens species species Bacillus licheniformis 1 1402 0 1551 Bacillus vallismortis species 1 0 281 72361 1 species Bacillus paralicheniformis 0 1648923 1503 Bacillus sonorensis species 1 0 119858 1408 1 species Bacillus weihaiensis 2015 0 1547283 0 1375 86664 species Bacillus flexus 1 0 351195 1979 1 genus Salimicrobium jeotgali species 1 0 1230341 1979 Lysinibacillus genus 1 5 56 0 400634 10298 0 1421 4536 Lysinibacillus sphaericus species 1 0 2636778 1745 no rank 1 species Lysinibacillus sp. YS11 1 0 1745 2072025 1972 0 28031 species Lysinibacillus fusiformis 1 0 1989 1145276 1 species Lysinibacillus varians genus 1 0 29331 2451 Amphibacillus xylanus species 1 2451 0 1449 2 genus 2675230 0 4199 0 665099 2202 1 Bacillus oceanisediminis species species Bacillus kochii 1 0 1997 859143 genus Geobacillus 1 15 893 0 129337 11802 no rank 6 0 2642459 3925 species Geobacillus sp. C56-T3 1 0 691437 568 1 species Geobacillus sp. GHH01 0 1233873 436 1 Geobacillus sp. Y4.1MC1 species 1250 0 581103 Geobacillus sp. Y412MC52 species 1 0 343 550542 0 544556 389 species Geobacillus sp. Y412MC61 1 1 Geobacillus sp. WCH70 species 0 471223 939 species Geobacillus genomosp. 3 1 0 1921421 874 0 129338 813 1 species Geobacillus subterraneus Geobacillus thermodenitrificans species 1 0 33940 995 species group 4 1505648 0 3275 0 33938 620 Geobacillus thermocatenulatus species 1 169283 0 744 1 species Geobacillus lituanicus 0 494 1462 Geobacillus kaustophilus species 1 1417 0 33941 1 species Geobacillus thermoleovorans 1 species Geobacillus stearothermophilus 0 1027 1422 0 1461 459532 1 genus 1461 0 586416 1 Terribacillus aidingensis species genus Virgibacillus 7 1 26 0 84406 9659 0 2017483 1356 species Virgibacillus phasianinus 1 no rank 2 0 3122 2620237 0 1911587 1499 1 species Virgibacillus sp. 6R 0 403957 1623 Virgibacillus sp. SK37 species 1 0 2139 163877 Virgibacillus necropolis species 1 Virgibacillus pantothenticus species 1 0 1423 1473 1593 0 1482 Virgibacillus halodenitrificans species 1 1 2 genus Parageobacillus 0 1748 1906945 4 species Parageobacillus thermoglucosidasius 1 0 1426 1744 genus 5 7497 0 2675234 species Bacillus lehensis 1 0 300825 1210 1 species Bacillus pseudofirmus 1673 0 79885 species Bacillus halodurans 1 0 86665 1071 Bacillus clausii species 1 1823 0 79880 0 1720 199441 1 Bacillus krulwichiae species Lentibacillus genus 1 2 1 1436 0 175304 1 Lentibacillus amyloliquefaciens species 0 1472767 1435 107 0 909932 142493 Negativicutes class 31 1 1966 1843489 0 74774 order Veillonellales 11 1 1 10 family Veillonellaceae 0 72808 31977 2341 0 8998 909928 28 2 1 genus Negativicoccus 1702287 0 8970 Negativicoccus massiliensis species 1 Dialister genus 1 2 21 0 29219 39948 species Dialister pneumosintes 1 0 29198 39950 471 0 17589 906 genus Megasphaera 1 2 Megasphaera elsdenii species 1 0 907 17118 Veillonella genus 1 3 14 0 29465 14661 Veillonella parvula species 1 0 10371 29466 1 species Veillonella rodentium 0 4276 248315 14 1 order Selenomonadales 37256 0 909929 82 6 0 1843490 4885 Sporomusaceae family 4 1 3 1 genus Pelosinus 0 365348 4879 137 2306 0 365349 species Pelosinus fermentans 1 1 no rank 0 2436 2629460 1 species Pelosinus sp. UFO1 0 2436 484770 1843491 0 32289 213 1 9 family Selenomonadaceae 1 2 Megamonas genus 4372 0 158846 6 1 Megamonas hypermegale species 0 4366 158847 218 0 27704 970 Selenomonas genus 6 1 Selenomonas sputigena species 1 0 5764 69823 no rank 3 0 14096 2637378 Selenomonas sp. oral taxon 136 species 1 0 4870 713030 0 712538 5137 species Selenomonas sp. oral taxon 478 1 0 4089 1884263 1 species Selenomonas sp. oral taxon 920 1 species Selenomonas ruminantium 0 7626 971 1 5 order Acidaminococcales 1843488 0 30356 43 4 1 Acidaminococcaceae family 0 909930 30313 85 47 0 30228 904 genus Acidaminococcus 1 3 1 Acidaminococcus intestini species 0 187327 11509 1 Acidaminococcus fermentans species 0 18672 905 2 no rank 0 1943 33974 1930845 0 1943 24 2 1 genus Ndongobacter 0 1871025 1919 Ndongobacter massiliensis species 1 0 1676648 2298 24 5 1 Limnochordia class order Limnochordales 1 4 48 2274 0 1676649 family Limnochordaceae 1 3 13 0 2226 1676650 genus Limnochorda 1 2 49 0 2213 1676651 Limnochorda pilosa species 1 0 2164 1555112 149 clade 74607 0 1798711 13 1117 0 74607 phylum Cyanobacteria 1 149 0 516 1890505 3 order 0 1890528 516 10 3 1 Chroococcidiopsidaceae family 5 54298 0 506 Chroococcidiopsis genus 1 2 species Chroococcidiopsis thermalis 1 54299 0 501 Nostocales order 33 1 43 0 1161 19304 34 0 1162 10376 family Nostocaceae 18 1 0 2582 1163 7 4 1 Anabaena genus 0 2619674 1594 no rank 2 0 1647413 857 1 Anabaena sp. WA102 species 0 46234 737 1 Anabaena sp. 90 species 1165 0 981 Anabaena cylindrica species 1 0 1172 264688 8 1 3 genus Trichormus 0 645 1164 species Trichormus azollae 1 519 0 264691 1 Trichormus variabilis species Nostoc genus 1 10 47 0 6588 1177 Nostoc flagelliforme species 1 0 1306274 1127 0 4780 2593658 7 no rank 1 Nostoc sp. PCC 7107 species 0 317936 596 0 886 1261031 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 0 1751286 646 1 species Nostoc sp. NIES-3756 0 1869241 947 1 Nostoc sp. CENA543 species 1 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 804 1618022 500 0 103690 1 species Nostoc sp. PCC 7120 1 Nostoc sp. PCC 7524 species 0 28072 401 1 species Nostoc punctiforme 0 272131 634 1219117 0 810 no rank 1 1 species Nostocales cyanobacterium HT-58-2 1940762 0 810 0 1892263 507 2 family 2 1 Fischerella genus 1190 0 507 1 506 0 494603 1 no rank Fischerella sp. NIES-3754 species 1 0 1752063 506 8 family 0 6209 2661849 Calothrix genus 8 1 41 0 6209 1186 6 no rank 0 4737 2619626 1 Calothrix sp. PCC 7507 species 0 99598 775 0 642 1337936 species Calothrix sp. 336/3 1 2005461 0 735 Calothrix sp. NIES-4101 species 1 Calothrix sp. NIES-2098 species 1 0 741 1954171 0 2005462 606 1 Calothrix sp. NIES-3974 species 1 Calothrix sp. NIES-4071 species 0 1238 2005469 1 Calothrix parietina species 0 1431 32054 family Rivulariaceae 3 1 7 0 1185 1359 6 1352 0 373984 genus Rivularia 2 1 1 no rank 0 2676603 1346 373994 0 1346 1 Rivularia sp. PCC 7116 species 17 52604 0 1972 order Pleurocapsales 7 1 7 0 1396 1890498 family Dermocarpellaceae 1 4 3 0 102115 1389 Stanieria genus 1 3 1 no rank 0 617 2642663 Stanieria sp. NIES-3757 species 1 0 617 1807358 769 0 102116 1 Stanieria cyanosphaera species 1 2 family Hyellaceae 0 559 1890500 1 0 558 44474 1 genus 0 54308 558 Pleurocapsa minor species 1 0 16568 1301283 42 subclass 0 10933 1118 7 1 24 order Chroococcales 2 1099 0 1890452 family Cyanobacteriaceae 1 3 0 102234 1097 3 2 1 Cyanobacterium genus 1094 0 379064 species Cyanobacterium aponinum 1 Microcystaceae family 4 1 7 1520 0 1890449 Microcystis genus 1 3 25 0 1513 1125 species Microcystis aeruginosa 1 0 1024 1126 no rank 1 0 464 2643300 0 1967666 464 species Microcystis sp. MC19 1 1 7 Chroococcaceae family 0 1890464 3365 11 genus 1 0 268175 917 917 0 2648896 1 no rank 2005460 0 917 Chondrocystis sp. NIES-4102 species 1 9 669357 0 2184 Geminocystis genus 3 1 0 2625037 2175 2 no rank 0 1203 1617448 1 species Geminocystis sp. NIES-3709 species Geminocystis sp. NIES-3708 1 0 972 1615909 2 0 102231 253 genus Gloeocapsa 1 2 no rank 1 251 0 2623012 251 0 1173026 1 species Gloeocapsa sp. PCC 7428 49 0 4942 1890450 Aphanothecaceae family 9 1 1 genus 0 748 1453359 1 Candidatus Atelocyanobacterium thalassa species 0 713887 748 genus 1 888 0 263510 0 2546360 888 1 species 0 888 43989 1 strain Cyanothece sp. ATCC 51142 0 92682 382 2 no rank 2 0 76023 382 Halothece genus 2 1 0 2632878 380 1 no rank 1 species Halothece sp. PCC 7418 0 380 65093 0 1105 2546365 genus 2 2546366 0 1105 species 2 Cyanothece sp. PCC 8801 strain 1 0 558 41431 1 Cyanothece sp. PCC 8802 strain 0 395962 547 1770 0 28070 2 genus 1 species 0 1091 2546356 0 65393 1091 strain Cyanothece sp. PCC 7424 1 0 2546359 679 1 species 0 497965 679 1 Cyanothece sp. PCC 7822 strain Oscillatoriales order 1 18 30 5635 0 1150 34 0 1892255 586 Gomontiellaceae family 2 1 1 genus 0 241421 552 0 241425 552 species Crinalium epipsammum 1 1 0 1408 1892252 Microcoleaceae family 1 3 genus 1 0 44471 673 1 no rank 0 2642155 673 0 1173027 673 1 Microcoleus sp. PCC 7113 species 1 genus 0 1205 734 species Trichodesmium erythraeum 1 734 0 1206 Cyanothecaceae family 1 3 11 0 1892249 512 2 1 genus Cyanothece 501 0 43988 28 no rank 1 2649277 0 473 473 0 395961 1 species Cyanothece sp. PCC 7425 2 0 1892251 1115 family Coleofasciculaceae 1 3 Geitlerinema genus 2 1 2 0 1113 63132 0 2648775 1111 no rank 1 species Geitlerinema sp. PCC 7407 1 0 1111 1173025 19 0 1892254 1984 family Oscillatoriaceae 6 1 0 1158 1276 13 3 1 genus Oscillatoria 1 Oscillatoria nigro-viridis species 0 482564 630 0 633 118323 Oscillatoria acuminata species 1 0 1155738 689 3 2 1 genus Moorea 0 686 1155739 Moorea producens species 1 343 0 32931 1890424 Synechococcales order 56 1 2 family 0 1890429 760 0 760 155977 1 2 1 genus Acaryochloris 0 759 155978 species Acaryochloris marina 1 0 476 1890436 2 family genus Pseudanabaena 2 1 7 0 1152 476 no rank 1 0 2593292 469 82654 0 469 species Pseudanabaena sp. PCC 7367 1 1 6 family Leptolyngbyaceae 0 1890438 3321 31 genus Leptolyngbya 1 5 9 0 47251 3290 species Leptolyngbya boryana 1 0 585 1184 0 2650499 2696 no rank 3 species Leptolyngbya sp. O-77 1 0 1080068 1385 species Leptolyngbya sp. PCC 7376 1 0 781 111781 1 species Leptolyngbya sp. NIES-3755 1752064 0 530 6 0 1668 1890428 Merismopediaceae family 5 1 1662 0 1142 28 1 4 Synechocystis genus 2640012 0 1634 3 no rank Synechocystis sp. PCC 6714 species 1 0 380 1147 1 species Synechocystis sp. PCC 6803 0 1148 627 0 627 2116702 Synechocystis sp. IPPAS B-1465 species 1 33 1 Synechococcaceae family 0 18892 1890426 122 0 378 146785 genus 1 1 Thermosynechococcus elongatus species 0 378 146786 51 0 3657 167375 Cyanobium genus 1 3 0 2059 2627006 no rank 1 0 2059 1851505 1 species Cyanobium sp. NIES-981 species Cyanobium gracile 1 0 59930 1547 genus Synechococcus 26 1 372 0 1129 14309 species Synechococcus elongatus 1 0 32046 531 373 0 33070 1 species Synechococcus lividus 23 no rank 0 2626047 13033 585423 0 715 1 species Synechococcus sp. KORDI-49 species Synechococcus sp. JA-3-3Ab 1 0 321327 1326 195248 0 259 species Synechococcus sp. PCC 8807 1 0 300 195253 Synechococcus sp. PCC 6312 species 1 Synechococcus sp. WH 7803 species 1 0 32051 518 1 species Synechococcus sp. CC9311 0 64471 231 0 195498 195 1 species Synechococcus sp. PCC 7117 0 374982 411 species Synechococcus sp. PCC 73109 1 0 696 316278 1 species Synechococcus sp. RCC307 0 819 1916956 species Synechococcus sp. SynAce01 1 0 110662 566 Synechococcus sp. CC9605 species 1 species Synechococcus sp. CC9902 1 249 0 316279 0 600 1827144 1 species Synechococcus sp. NIES-970 0 920 321332 1 Synechococcus sp. JA-2-3B'a(2-13) species Synechococcus sp. WH 8109 species 1 743 0 166314 1 Synechococcus sp. PCC 7002 species 0 32049 248 610 0 585425 species Synechococcus sp. KORDI-52 1 1280380 0 630 1 species Synechococcus sp. KORDI-100 0 374981 422 1 Synechococcus sp. PCC 7003 species 1350461 0 578 species Synechococcus sp. UTEX 2973 1 1 species Synechococcus sp. PCC 7502 0 414 1173263 1 species Synechococcus sp. WH 8103 0 29410 798 0 785 84588 Synechococcus sp. WH 8102 species 1 2 0 426 13034 Dactylococcopsis genus 2 1 0 424 292566 1 Dactylococcopsis salina species 0 2303730 723 2 family 2 1 genus Halomicronema 0 723 170610 4 1209493 0 719 species Halomicronema hongdechloris 1 1 5 Prochloraceae family 0 6748 1213 15 genus Prochlorococcus 1 4 4 1218 0 6733 no rank 2 0 1252 2627481 1 species Prochlorococcus sp. MIT 0604 0 855 1501268 1 species Prochlorococcus sp. MIT 0801 0 1501269 397 species Prochlorococcus marinus 1 1219 0 5477 24 0 2458 307596 class Gloeobacteria 6 1 order Gloeobacterales 5 1 24 0 307595 2434 2410 0 1890422 15 1 4 Gloeobacteraceae family 33071 0 2395 28 3 1 Gloeobacter genus 1 Gloeobacter violaceus species 0 33072 1225 species Gloeobacter kilaueensis 1 0 1142 1416614 1 no rank 0 845 1983111 1 cyanobacterium endosymbiont of Epithemia turgida species 0 845 718217 1297 0 33668 phylum 36 Deinococci class 1 36 230 33668 0 188787 order 3 0 2762275 1165 family Trueperaceae 1 3 9 0 332247 1165 2 1 Truepera genus 0 332248 1156 13 332249 0 1143 Truepera radiovictrix species 1 161 0 68933 12454 Thermales order 17 1 Thermaceae family 1 16 82 12293 0 188786 7 1664 0 208447 Oceanithermus genus 2 1 1 Oceanithermus profundus species 0 187137 1657 2 1 Marinithermus genus 0 186191 1072 3 0 186192 1069 1 Marinithermus hydrothermalis species 0 3485 65551 13 3 1 genus Meiothermus 277 0 2012 Meiothermus ruber species 1 0 1460 52022 Meiothermus silvanus species 1 5990 0 270 164 1 8 genus Thermus 0 271 990 Thermus aquaticus species 1 Thermus parvatiensis species 1 456163 0 727 1 Thermus brockianus species 0 562 56956 0 37636 628 species Thermus scotoductus 1 no rank 1 2619321 0 579 0 579 1111069 species Thermus sp. CCB_US3_UF1 1 0 732 56957 1 species Thermus oshimai 0 1608 274 species Thermus thermophilus 1 15 1 Deinococcales order 0 19819 118964 242 0 19577 183710 137 14 1 Deinococcaceae family 307 0 1298 19440 Deinococcus genus 13 1 1 Deinococcus actinosclerus species 0 1768108 1793 432329 0 1354 1 Deinococcus peraridilitoris species 0 310783 1240 1 species Deinococcus deserti 0 1740 1309411 1 Deinococcus soli Cha et al. 2016 species 1 no rank 0 2623546 1497 1 species Deinococcus sp. NW-56 0 1497 2080419 0 55148 1542 species Deinococcus proteolyticus 1 species Deinococcus radiodurans 1 1299 0 1848 0 1263 68909 species Deinococcus geothermalis 1 species Deinococcus puniceus 1 0 1456 1182568 0 2278 1182571 species Deinococcus swuensis 1 0 502394 1847 1 species Deinococcus gobiensis 1 Deinococcus maricopensis species 0 309887 1275 phylum 10 0 508458 8173 35 649775 0 8173 Synergistia class 10 1 order Synergistales 9 1 39 0 649776 8138 0 649777 8099 296 8 1 family Synergistaceae 0 468 336260 1 genus species Thermovirga lienii 1 0 336261 468 2 1 Cloacibacillus genus 0 5779 508459 8 0 1197717 5771 species Cloacibacillus porcorum 1 0 678 81461 4 2 1 genus Thermanaerovibrio 0 674 81462 Thermanaerovibrio acidaminovorans species 1 49894 0 319 1 genus 0 97477 319 1 Acetomicrobium mobile species genus 1 0 81466 559 Aminobacterium colombiense species 1 0 559 81468 9 phylum 2557 0 200940 class Thermodesulfobacteria 9 1 8 0 67799 2557 1 8 Thermodesulfobacteriales order 0 188710 2549 2 1 7 Thermodesulfobacteriaceae family 2547 0 188711 9 1 2 genus Thermodesulfatator 241192 0 338 3 1 species Thermodesulfatator indicus 335 0 171695 genus Thermodesulfobacterium 3 1 5 1740 0 1850 0 1741 598 1 species Thermodesulfobacterium commune Thermodesulfobacterium geofontis species 1 1295609 0 1247 1 genus 0 350 444090 350 0 1653476 species Caldimicrobium thiodismutans 1 44 phylum 0 200918 23021 60 0 188708 23021 class Thermotogae 44 1 order Petrotogales 1 8 4 0 7212 1643947 0 1643949 7208 family 7 0 1511648 1649 2 2 1 genus Defluviitoga species Defluviitoga tunisiensis 1 0 1006576 1647 Marinitoga genus 3 1 36 0 160798 4883 1 species Marinitoga piezophila 0 2437 149715 1 no rank 0 2410 2640159 1 species Marinitoga sp. 1137 0 2410 1545835 2 1 Petrotoga genus 0 676 28236 3 Petrotoga mobilis species 1 0 673 69499 0 1476 1643946 3 1 7 Kosmotogales order 0 1473 1643948 3 1 6 family Kosmotogaceae 1 3 genus Kosmotoga 0 984 651456 5 1 species Kosmotoga pacifica 0 618 1330330 Kosmotoga olearia species 1 0 651457 361 2 1 genus Mesotoga 486 0 1184396 3 1 species Mesotoga prima 0 1184387 483 order Thermotogales 28 1 6 0 2419 14273 family Thermotogaceae 17 1 55 0 6920 188709 Pseudothermotoga genus 1 5 41 0 1643951 1958 0 442 119394 species Pseudothermotoga thermarum 1 1 species Pseudothermotoga elfii 619 0 38322 Pseudothermotoga hypogea species 1 0 57487 275 1 Pseudothermotoga lettingae species 0 177758 581 131 0 2335 4907 Thermotoga genus 1 11 1 Thermotoga naphthophila species 0 93930 506 0 1724 2631113 no rank 4 0 426 126740 1 species Thermotoga sp. RQ2 1 species Thermotoga sp. Cell2 0 453 1157947 546 0 126738 1 species Thermotoga sp. RQ7 1 Thermotoga sp. 2812B species 0 1157948 299 1 species Thermotoga maritima 0 2336 426 species Thermotoga neapolitana 1 0 508 2337 0 702 1508420 1 Thermotoga profunda species 0 519 93929 1 Thermotoga petrophila species 0 391 1508419 1 Thermotoga caldifontis species 1 10 family Fervidobacteriaceae 0 1643950 7347 79 2420 0 4804 3 1 5 Thermosipho genus no rank 2 0 1939 2676525 Thermosipho sp. 1063 species 1 0 1462747 960 0 1437364 979 Thermosipho sp. 1070 species 1 0 1012 46541 species Thermosipho melanesiensis 1 0 1850 2421 1 species Thermosipho africanus 0 2464 2422 14 4 1 Fervidobacterium genus 0 1019 93466 1 species Fervidobacterium pennivorans 1 Fervidobacterium nodosum species 2424 0 728 species Fervidobacterium islandicum 1 2423 0 703 0 1373 1930617 5 phylum 1 1373 0 1962850 class Calditrichae 1 5 4 1 order Calditrichales 0 1372 1962852 4 family Calditrichaceae 3 1 4 1962854 0 1368 2 0 187144 1364 genus Caldithrix 1 2 0 1362 187145 species Caldithrix abyssi 1 5 clade 1305 0 2498710 67814 0 1305 phylum 5 0 1305 693071 2 5 1 class Caldisericia 5 0 1303 693072 order Caldisericales 1 4 0 1298 693073 2 3 1 family Caldisericaceae 2 1 Caldisericum genus 0 1296 693074 3 Caldisericum exile species 1 0 1293 693075 0 203691 59468 phylum 57 57 1 class Spirochaetia 203692 0 59468 140 0 1643688 5508 9 order 9 1 family Leptospiraceae 0 5508 170 4 0 338321 832 3 1 2 Turneriella genus species Turneriella parva 1 0 29510 829 6 1 Leptospira genus 0 4672 171 26 1 species Leptospira biflexa 0 621 172 0 28183 582 1 species Leptospira santarosai species Leptospira interrogans 1 0 173 1963 0 821 174 species Leptospira borgpetersenii 1 0 659 28452 1 Leptospira alstonii species 666 0 38537 136 order Spirochaetales 40 1 0 28267 137 488 22 1 Spirochaetaceae family 0 1616789 1072 1 genus 1072 0 1307761 Salinispira pacifica species 1 genus Sphaerochaeta 4 1 22 4425 0 399320 0 1238 1131707 species Sphaerochaeta pleomorpha 1 1 species Sphaerochaeta globosa 0 1397 1131703 0 1768 273376 species Sphaerochaeta coccoides 1 3 1 Spirochaeta genus 0 3126 146 18 154 0 1804 1 species Spirochaeta thermophila species Spirochaeta africana 1 0 1304 46355 0 1101 1911556 1 genus 1101 0 55206 1 Sediminispirochaeta smaragdinae species 432 0 157 18055 genus Treponema 12 1 species Treponema caldarium 1 0 215591 934 0 694 409322 Treponema pedis species 1 0 2793 2638727 1 no rank 2793 0 1539298 species Treponema sp. OMZ 838 1 0 81028 2405 1 Treponema brennaborense species 1 species Treponema pallidum 0 160 173 1 species Treponema succinifaciens 167 0 3325 1414 0 88058 1 Treponema primitia species 1 Treponema azotonutricium species 0 1567 150829 species Treponema putidum 1 2630 0 221027 species Treponema denticola 1 0 158 1519 species Treponema paraluiscuniculi 1 169 0 53435 8 0 1643685 9604 family Borreliaceae 17 1 Borreliella genus 1 8 95 0 64895 4272 0 29518 706 Borreliella afzelii species 1 0 62088 657 Borreliella valaisiana species 1 0 351 1674146 Borrelia mayonii species 1 1 species Borreliella bissettii 0 386 64897 0 501 664662 species Borreliella bavariensis 1 1 species Borreliella burgdorferi 0 139 801 Borreliella garinii species 1 0 29519 775 1 8 Borrelia genus 0 138 5324 35 0 141 820 species Borrelia parkeri 1 1 species Borrelia recurrentis 0 639 44449 495 0 140 species Borrelia hermsii 1 1 species Borrelia turicatae 0 1074 142 0 466 143 Borrelia anserina species 1 0 40834 686 Borrelia duttonii species 1 1 Borrelia miyamotoi species 0 1109 47466 Brachyspirales order 1 7 4 15283 0 1643686 0 15279 143786 253 1 6 Brachyspiraceae family 0 29521 15026 239 1 5 Brachyspira genus 84378 0 2486 species Brachyspira murdochii 1 1 Brachyspira pilosicoli species 0 52584 5554 Brachyspira hyodysenteriae species 1 3607 0 159 species Brachyspira intermedia 1 0 84377 3140 0 1443 200938 5 phylum 1 5 class Chrysiogenetes 1443 0 118001 23 4 1 order Chrysiogenales 0 189769 1420 26 3 1 Chrysiogenaceae family 0 1394 189770 13 2 1 genus Desulfurispirillum 0 1381 393029 7 0 1374 936456 species Desulfurispirillum indicum 1 27 phylum 0 200783 8716 187857 0 8716 3 27 1 class Aquificae 5 0 32069 7428 order Aquificales 1 20 0 90150 303 no rank 1 genus 1 0 412592 303 303 0 412593 1 species Thermosulfidibacter takaii 0 224027 3744 13 6 1 family Hydrogenothermaceae 2 0 212790 3062 genus Sulfurihydrogenibium 3 1 1 no rank 2619248 0 1924 Sulfurihydrogenibium sp. YO3AOP1 species 1 0 1924 436114 1 species Sulfurihydrogenibium azorense 0 1136 309806 1 0 182899 669 Persephonella genus 1 2 668 0 309805 species Persephonella marina 1 family Aquificaceae 1 12 34 64898 0 3376 393 0 75905 2 genus 1 Thermocrinis ruber species 152 0 75906 0 241 136094 1 species Thermocrinis albus 0 2713 335 1 2 1 genus Aquifex 0 63363 334 1 Aquifex aeolicus species 6 1 Hydrogenobaculum genus 0 2404 168657 22 no rank 5 0 2622382 2382 species Hydrogenobaculum sp. HO 1 547144 0 492 species Hydrogenobaculum sp. SHO 1 0 492 547145 0 547143 492 Hydrogenobaculum sp. 3684 species 1 1 species Hydrogenobaculum sp. Y04AAS1 0 414 380749 492 0 547146 1 species Hydrogenobaculum sp. SN 1 genus 0 210 939 Hydrogenobacter thermophilus species 1 210 0 940 28 0 1285 1485951 order Desulfurobacteriales 1 6 family Desulfurobacteriaceae 1 5 4 0 1257 558314 Desulfurobacterium genus 2 1 2 0 955 64159 1 species Desulfurobacterium thermolithotrophum 0 953 64160 Thermovibrio genus 2 1 5 298 0 171868 1 species Thermovibrio ammonificans 0 228745 293 phylum 8 3854 0 200930 14 0 68337 3854 class Deferribacteres 1 8 order Deferribacterales 1 7 37 0 191393 3840 1 6 Deferribacteraceae family 0 191394 3803 34 2 1 genus Deferribacter 0 1241 53572 1 species Deferribacter desulfuricans 1 0 1240 197162 0 545865 1016 genus 1 1 species Calditerrivibrio nitroreducens 0 477976 1016 1 genus 760 0 2351 species Flexistipes sinusarabici 1 0 760 2352 0 752 117999 genus 1 0 118000 752 Denitrovibrio acetiphilus species 1 5 phylum 68297 0 2659 0 2659 203486 2 5 1 Dictyoglomia class 4 1 Dictyoglomales order 0 203487 2657 2 0 203488 2655 1 3 1 family Dictyoglomaceae 0 2654 13 2 genus Dictyoglomus turgidum species 1 0 1311 513050 species Dictyoglomus thermophilum 1 14 0 1343 0 72360 32066 25 phylum 25 1 class Fusobacteriia 0 72360 203490 20 24 1 order Fusobacteriales 203491 0 72340 89 Fusobacteriaceae family 12 1 25 203492 0 55496 1 2 genus Ilyobacter 0 1625 167639 2 0 167642 1623 1 Ilyobacter polytropus species 90 0 53846 848 Fusobacterium genus 9 1 species Fusobacterium ulcerans 1 0 861 3378 1 Fusobacterium hwasookii species 0 6394 1583098 1 Fusobacterium mortiferum species 0 850 4096 1 species Fusobacterium gonidiaformans 0 1939 849 0 7538 856 1 Fusobacterium varium species 859 0 1587 1 species Fusobacterium necrophorum 1 species Fusobacterium nucleatum 0 851 17978 0 860 10846 species Fusobacterium periodonticum 1 11 1 family Leptotrichiaceae 1129771 0 16755 9 0 8268 32067 12 1 5 genus Leptotrichia 1 species Leptotrichia buccalis 40542 0 1940 6316 0 2633022 3 no rank 1 species Leptotrichia sp. oral taxon 498 0 2077 712368 0 1785996 1879 species Leptotrichia sp. oral taxon 847 1 0 2360 712357 species Leptotrichia sp. oral taxon 212 1 2 1 Sneathia genus 0 2662 168808 2 1 Sneathia amnii species 0 2660 187101 1 genus 0 32068 2807 2807 0 826 species Sebaldella termitidis 1 0 3009 34104 2 1 2 genus Streptobacillus Streptobacillus moniliformis species 1 0 34105 3007 clade 374 5596238 0 1783270 phylum 8 0 4881 142182 class Gemmatimonadetes 1 8 28 0 219685 4881 1 7 order Gemmatimonadales 4853 0 219686 132 20 0 4721 219687 family Gemmatimonadaceae 1 6 Gemmatimonas genus 1 3 10 0 2428 173479 1251 0 1379270 species Gemmatimonas phototrophica 1 1 Gemmatimonas aurantiaca species 0 173480 1167 2 1 genus Gemmatirosa 0 2273 1706036 16 species Gemmatirosa kalamazoonesis 1 0 2257 861299 1 phylum 0 456828 517 genus 1 0 456826 517 0 517 456827 1 Candidatus Cloacimonas acidaminovorans species phylum 5 0 2407 65842 5 1 Fibrobacteria class 0 204430 2407 3 Fibrobacterales order 4 1 5 2404 0 218872 1 3 Fibrobacteraceae family 0 204431 2399 3 1 0 832 2396 genus Fibrobacter 2 1 species Fibrobacter succinogenes 1 0 2395 833 0 68336 5588433 clade 360 72 0 5569211 976 Bacteroidetes phylum 330 1 0 31406 117747 33 24 1 class Sphingobacteriia 0 200666 31373 89 23 1 order Sphingobacteriales Sphingobacteriaceae family 1 22 84 31284 0 84566 genus Mucilaginibacter 4 1 49 0 4949 423349 0 2617802 1740 1 no rank 0 1300914 1740 Mucilaginibacter sp. PAMC 26640 species 1 1550579 0 1676 Mucilaginibacter gotjawali species 1 1 Mucilaginibacter sp. BJC16-A31 species 0 1484 1234841 0 84567 10090 55 6 1 genus Pedobacter 0 363852 1778 1 Pedobacter ginsengisoli species Pedobacter heparinus species 1 0 1973 984 no rank 1 0 2628915 1893 0 1893 1727164 1 species Pedobacter sp. PACM 27299 0 2218 188932 Pedobacter cryoconitis species 1 1 species Pedobacter steynii 0 430522 2173 0 84568 1600 1 no rank Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 1 0 1600 1986952 0 9763 28453 44 1 6 genus Sphingobacterium Sphingobacterium mizutaii species 1 0 1010 1961 0 7758 2609468 no rank 4 species Sphingobacterium sp. 21 1 0 743722 1887 Sphingobacterium sp. B29 species 1 0 1834 1933220 0 2003121 2057 Sphingobacterium sp. G1-14 species 1 1 species Sphingobacterium sp. ML3W 1538644 0 1980 1 2 Pseudopedobacter genus 0 1649482 1968 9 151895 0 1959 Pseudopedobacter saltans species 1 genus Solitalea 1 2 8 0 2830 929509 Solitalea canadensis species 1 0 995 2822 73 1 Bacteroidia class 200643 0 5227372 178 1 60 Bacteroidales order 0 5216482 171549 1583 171550 0 177903 55 1 5 family Rikenellaceae 14 0 1611681 3938 genus Mucinivorans 2 1 Mucinivorans hirudinis species 1 3924 0 1433126 Alistipes genus 2 1 155 0 173910 239759 0 173755 214856 species Alistipes finegoldii 1 6 family 0 2005520 17811 0 6780 307628 20 1 2 Petrimonas genus 0 1642646 6760 1 Petrimonas mucosa species 1 2 Proteiniphilum genus 0 6886 294702 61 0 1642647 6825 1 species Proteiniphilum saccharofermentans genus Fermentimonas 2 1 15 0 1784836 4145 0 4130 1562970 Fermentimonas caenicola species 1 Odoribacteraceae family 1 3 2 111765 0 1853231 2 1 Odoribacter genus 0 283168 111763 57 0 111706 28118 1 Odoribacter splanchnicus species 0 1595499 333046 5 no rank genus 3 0 909656 1592826 1 Bacteroides dorei species 308876 0 357276 1 species Bacteroides vulgatus 1184913 0 821 0 376805 99037 species Bacteroides salanitronis 1 Candidatus Azobacteroides genus 1 2 10 0 511434 2673 0 2663 511435 1 Candidatus Azobacteroides pseudotrichonymphae species 0 482606 171552 49 11 1 Prevotellaceae family 0 482557 838 891 1 10 genus Prevotella 1 species Prevotella enoeca 76123 0 20866 1 species Prevotella denticola 28129 0 32083 0 2638335 12359 no rank 1 0 652716 12359 species Prevotella sp. oral taxon 299 1 Prevotella fusca species 1 589436 0 51401 1 Prevotella dentalis species 0 40147 52227 species Prevotella ruminicola 1 0 839 52473 1 species Prevotella melaninogenica 0 28132 58983 1 Prevotella intermedia species 0 28131 163709 1 Prevotella jejuni species 0 49645 1177574 0 2532 185291 no rank 1 0 2532 1400053 species Bacteroidales bacterium CF 1 196 0 500250 2005525 Tannerellaceae family 7 1 1 3 genus Parabacteroides 375288 0 469099 146 0 823 152578 1 species Parabacteroides distasonis 1 no rank 0 316375 2649774 1 Parabacteroides sp. CT06 species 0 316375 2025876 genus Tannerella 3 1 84 195950 0 30955 no rank 1 2620507 0 9711 0 9711 712710 1 species Tannerella sp. oral taxon HOT-286 0 21160 28112 1 species Tannerella forsythia 4 1 Porphyromonadaceae family 0 17359 171551 56 17303 0 836 40 3 1 Porphyromonas genus species Porphyromonas gingivalis 1 0 837 12542 species Porphyromonas asaccharolytica 1 0 28123 4721 0 6237 2005523 214 1 3 family Paludibacteraceae 1 2 genus Paludibacter 0 6023 346096 24 0 5999 185300 1 Paludibacter propionicigenes species 93 0 2147281 815 family Bacteroidaceae 11 1 1 10 Bacteroides genus 816 0 2147188 66014 1 Bacteroides ovatus species 0 28116 341895 0 289925 246787 1 species Bacteroides cellulosilyticus species Bacteroides heparinolyticus 1 0 75126 28113 Bacteroides helcogenes species 1 0 290053 94817 0 229902 818 species Bacteroides thetaiotaomicron 1 Bacteroides zoogleoformans species 1 74524 0 28119 species Bacteroides caecimuris 1 0 185128 1796613 species Bacteroides fragilis 1 0 817 607847 0 182010 47678 species Bacteroides caccae 1 23 0 155656 2005519 Barnesiellaceae family 1 3 149 155633 0 397864 genus Barnesiella 1 2 Barnesiella viscericola species 1 0 397865 155484 order Marinilabiliales 1 12 33 0 10712 1970189 558415 0 2220 210 3 1 family Marinilabiliaceae 0 1193324 2010 4 1 2 Alkalitalea genus 1 species Alkalitalea saponilacus 0 889453 2006 3 0 1573805 2772 Marinifilaceae family 1 2 1 genus 2060722 0 2769 2769 0 1717717 species Marinifilaceae bacterium SPP2 1 22 0 1471398 4079 family Prolixibacteraceae 3 1 1471399 0 4057 13 2 1 Draconibacterium genus 0 4044 1168034 1 species Draconibacterium orientale family Salinivirgaceae 1 3 201 0 1608 1970190 0 1970191 1407 11 2 1 genus Salinivirga species Salinivirga cyanobacteriivorans 1 0 1396 1307839 1 6 order Bacteroidetes Order II. Incertae sedis 0 1100069 7823 133 7690 0 563843 65 5 1 Rhodothermaceae family genus 1 0 146918 1271 0 146919 1271 1 Salinibacter ruber species 24 0 3275 29548 genus Rhodothermus 1 2 0 29549 3251 species Rhodothermus marinus 1 no rank 1 0 3079 1196022 1 Rhodothermaceae bacterium RA species 0 1779382 3079 127 0 768503 70008 Cytophagia class 57 1 1 56 order Cytophagales 0 768507 69881 471 family Amoebophilaceae 1 4 2 1501348 0 811 8 0 281119 483 Candidatus Amoebophilus genus 1 2 0 281120 475 1 Candidatus Amoebophilus asiaticus species 1 genus 0 273135 326 2641185 0 326 no rank 1 1 Cardinium endosymbiont of Encarsia pergandiella species 249402 0 326 Persicobacteraceae family 3 1 3 2549 0 1853234 0 59740 2546 7 1 2 Persicobacter genus 2539 0 2664020 no rank 1 1 Persicobacter sp. JZB09 species 1085624 0 2539 0 1846 1937968 8 2 1 Bernardetiaceae family 0 1937972 1838 genus 1 0 999 1838 1 species Bernardetia litoralis Hymenobacteraceae family 16 1 131 0 1853232 31899 312 21321 0 89966 genus Hymenobacter 1 8 0 2615202 15009 no rank 5 0 3198 1484116 1 Hymenobacter sp. PAMC 26554 species Hymenobacter sp. DG25A species 1 0 1968 1385663 species Hymenobacter sp. PAMC 26628 1 0 1484118 3931 species Hymenobacter sp. APR13 1 1356852 0 3655 Hymenobacter sp. DG25B species 1 0 1385664 2257 0 2646 1446467 1 species Hymenobacter swuensis 0 1411621 3354 Hymenobacter sedentarius species 1 Pontibacter genus 1 3 28 0 323449 4922 0 400092 2460 Pontibacter korlensis species 1 0 388950 2434 1 Pontibacter akesuensis species 36 0 1379908 5525 genus Rufibacter 4 1 no rank 2 0 2639626 3314 0 1379909 1537 1 Rufibacter sp. DG15C species species Rufibacter sp. DG31D 1 0 1379910 1777 species Rufibacter tibetensis 1 0 2175 512763 0 1795 2762301 family 2 10 0 869806 1795 Marivirga genus 2 1 Marivirga tractuosa species 1 0 1006 1785 82 0 89373 18657 family Cytophagaceae 15 1 genus Cytophaga 2 1 9 0 1845 978 1 species Cytophaga hutchinsonii 0 985 1836 0 2869 120831 9 1 2 genus Dyadobacter 0 2860 94254 1 species Dyadobacter fermentans 152 0 8723 107 Spirosoma genus 1 6 1379870 0 1406 1 species Spirosoma radiotolerans Spirosoma sp. HA7 species 1 0 1723 2057025 0 1178516 1774 1 Spirosoma montaniterrae species 1934 0 1211326 Spirosoma aerolatum species 1 Spirosoma rigui species 1 0 564064 1734 7 105 0 2003 genus Runella 2 1 0 106 1996 1 Runella slithyformis species 1745 0 861914 genus 1 0 2620963 1745 no rank 1 Fibrella sp. ES10-3-2-2 species 1 0 1745 1834519 0 319458 1390 1 genus 0 1390 316068 Leadbetterella byssophila species 1 15 0 563798 6856 family Cyclobacteriaceae 1 10 68288 0 2659 26 1 3 Cyclobacterium genus species Cyclobacterium amurskyense 1 320787 0 1268 Cyclobacterium marinum species 1 0 1365 104 0 1218 232244 2 1 2 genus Belliella 0 232259 1216 species Belliella baltica 1 2 1894 0 390846 genus Echinicola 2 1 1 species Echinicola vietnamensis 0 1892 390884 9 0 1070 246875 genus Algoriphagus 1 2 1 species Algoriphagus sp. M8-2 1061 0 1727163 3 200667 0 4997 Flammeovirgaceae family 1 3 2356 0 340671 1 no rank 1 species Flammeovirgaceae bacterium 311 0 2356 1257021 1 genus 0 2638 59739 0 2637820 2638 1 no rank species Flammeovirga sp. MY04 1 0 2638 1191459 class Flavobacteriia 146 1 20 0 212381 117743 Flavobacteriales order 145 1 166 0 212361 200644 1853230 0 1217 7 3 1 family Crocinitomicaceae genus Fluviicola 1 2 5 0 1210 332102 1205 0 191579 Fluviicola taffensis species 1 family 9 39782 0 3542 Blattabacterium genus 9 1 50 0 3542 34098 0 164514 705 1 Blattabacterium punctulatus species 6 no rank 0 2647581 2273 0 367488 311 1 Blattabacterium sp. (Periplaneta americana) species Blattabacterium sp. (Blatta orientalis) species 1 0 367806 251 0 457 624186 species Blattabacterium sp. (Blattella germanica) 1 1 species Blattabacterium sp. (Blaberus giganteus) 0 482 1186051 species Blattabacterium sp. (Mastotermes darwiniensis) 1 0 505 39768 267 0 1316444 1 species Blattabacterium sp. (Nauphoeta cinerea) 1 species Blattabacterium cuenoti 0 1653831 514 3 no rank 0 901 313602 5 0 336809 772 Candidatus Sulcia genus 1 2 species Candidatus Sulcia muelleri 1 0 336810 767 0 1940138 129 genus 1 0 129 1415657 1 species Candidatus Walczuchella monophlebidarum 0 1557 1333713 family 2 0 1557 267986 4 2 1 Owenweeksia genus 0 253245 1553 Owenweeksia hongkongensis species 1 1 0 1755828 461 family Ichthyobacteriaceae 1 2 0 1755829 460 genus 1 1 Ichthyobacterium seriolicida species 0 460 242600 family 21 0 2762318 76395 93 12225 0 308865 Elizabethkingia genus 1 6 0 1756149 1663 1 Elizabethkingia genomosp. 3 species species Elizabethkingia anophelis 1 0 4518 1117645 1 species Elizabethkingia miricola 0 172045 2437 0 1378 1756150 1 species Elizabethkingia genomosp. 4 0 2136 238 1 Elizabethkingia meningoseptica species Ornithobacterium genus 2 1 142 28250 0 31139 0 30997 28251 1 Ornithobacterium rhinotracheale species 2 1 genus Riemerella 0 34084 2665 9 1 Riemerella anatipestifer species 0 2656 34085 no rank 10 29558 0 2782232 genus Chryseobacterium 1 9 90 59732 0 26850 0 1685010 2384 species Chryseobacterium glaciei 1 Chryseobacterium gallinarum species 1 0 1324352 10849 0 253 4940 1 Chryseobacterium indologenes species species Chryseobacterium camelliae 1 0 1265445 1741 0 1714 558152 species Chryseobacterium piperi 1 0 2593645 5132 no rank 3 Chryseobacterium sp. IHB B 17019 species 1 0 1721091 1524 0 1870 2015076 Chryseobacterium sp. T16E-39 species 1 1 Chryseobacterium sp. StRB126 species 0 1738 878220 genus 1 0 2782228 2708 Chryseobacterium taklimakanense species 1 0 536441 2708 0 808 1013 1 genus 1 species Weeksella virosa 808 0 1014 Cryomorphaceae family 1 0 246874 4 family Flavobacteriaceae 103 1 1492 0 49546 128118 25 0 2793 326319 Dokdonia genus 1 4 2 no rank 0 1814 2615033 1 species Dokdonia sp. 4H-3-7-5 0 983548 943 Dokdonia sp. MED134 species 1 0 313590 871 1 species Dokdonia donghaensis 0 954 326320 0 1248 393005 genus 1 0 2069432 1248 1 Tamlana sp. UJ94 species 0 24751 1016 140 15 1 genus Capnocytophaga species Capnocytophaga ochracea 1 0 1018 1597 6 no rank 0 9427 2640652 0 209053 1571 Capnocytophaga sp. ChDC OS43 species 1 Capnocytophaga sp. oral taxon 878 species 1 0 2546 1316596 1 Capnocytophaga sp. H2931 species 0 1207 1945657 Capnocytophaga sp. oral taxon 323 species 1 0 1458 1705617 0 1316593 1580 Capnocytophaga sp. oral taxon 864 species 1 species Capnocytophaga sp. H4358 1 0 1945658 1065 1 species Capnocytophaga cynodegmi 0 1226 28189 Capnocytophaga gingivalis species 1 0 1017 2453 0 327575 2323 1 Capnocytophaga leadbetteri species 0 45243 1331 species Capnocytophaga haemolytica 1 species Capnocytophaga stomatis 1 0 1703 1848904 1 Capnocytophaga canimorsus species 0 1982 28188 0 2569 1019 1 species Capnocytophaga sputigena 1 genus 0 1209327 1387 0 1803846 1387 species Flavivirga eckloniae 1 11 0 4675 252356 genus Maribacter 1 5 no rank 3 0 2615042 3758 1 Maribacter sp. T28 species 0 1138 1836467 0 1644130 1375 1 Maribacter sp. 1_2014MBL_MicDiv species Maribacter sp. HTCC2170 species 1 0 313603 1245 species Maribacter cobaltidurans 1 0 906 1178778 20 0 104264 4896 Cellulophaga genus 4 1 1 species Cellulophaga lytica 1852 0 979 1 Cellulophaga baltica species 0 1849 76594 species Cellulophaga algicola 1 0 1175 59600 genus Polaribacter 6 1 40 52959 0 8994 1 Polaribacter reichenbachii species 0 996801 2251 4730 0 196858 3 no rank 2058137 0 1637 1 species Polaribacter sp. ALD11 0 1649 1529069 1 species Polaribacter sp. BM10 0 1444 313598 Polaribacter sp. MED152 species 1 1774273 0 1973 1 species Polaribacter vadi 1 3 genus Formosa 0 225842 1533 3 0 1530 2644710 2 no rank 1 Formosa sp. Hel3_A1_48 species 0 1336795 890 Formosa sp. Hel1_33_131 species 1 0 640 1336794 1 genus 1545 0 261827 0 1545 1736674 species Algibacter alginicilyticus 1 1 genus 0 1097 178469 1 species Arenibacter algicola 616991 0 1097 15 0 292691 5630 genus Gramella 5 1 0 1486245 1255 1 species Gramella flava 0 1913577 1119 1 species Gramella sp. LPB0144 1904 0 411153 1 Gramella forsetii species 1 species Gramella sp. SH35 0 2126553 1337 1 genus 1902 0 83612 species Psychroflexus torquis 1 0 1902 57029 1400 0 112040 3 2 1 Zobellia genus 1 Zobellia galactanivorans species 0 63186 1397 0 417127 1676 2 2 1 genus Zunongwangia 1 species Zunongwangia profunda 1674 0 398743 no rank 2 0 61432 2806 0 531844 1403 Flavobacteriaceae bacterium 3519-10 species 1 species Flavobacteriaceae bacterium UJ101 1 0 1150389 1403 genus Lutibacter 2 1 3 0 1713 358023 1710 0 1622118 1 Lutibacter profundi species 5 1 genus Myroides 0 76831 8870 116 0 1738 480520 1 Myroides profundi species 0 76832 3223 species Myroides odoratimimus 1 2 no rank 0 2642485 3793 1 species Myroides sp. A21 0 2199 1583100 0 1458492 1594 1 Myroides sp. ZB35 species 0 1512 1518147 1 genus 0 1790137 1512 Wenyingzhuangia fucanilytica species 1 1 genus 2700084 0 2019 1 species Lutibacter sp. LPB0138 2019 0 1850246 153265 0 931 genus 1 Aequorivita sublithincola species 1 0 931 101385 1 genus 716 0 389486 1 no rank 0 2648869 716 0 716 1453352 1 Sediminicola sp. YIK13 species 1 5 genus Nonlabens 0 363408 3759 4 Nonlabens sediminis species 1 1126 0 319236 no rank 2 2615035 0 1916 Nonlabens sp. MB-3u-79 species 1 0 838 2058134 1 Nonlabens sp. MIC269 species 0 1078 1476901 713 0 328515 1 Nonlabens dokdonensis species 9 0 4941 291183 Lacinutrix genus 1 4 1 species Lacinutrix venerupis 0 1486034 1832 no rank 2 3100 0 2647285 species Lacinutrix sp. Bg11-31 1 0 1355 2057808 0 1745 983544 species Lacinutrix sp. 5H-3-7-4 1 genus 1 1176327 0 710 710 0 2636237 no rank 1 2094025 0 710 1 Aureitalea sp. RR4-38 species 912 0 336276 1 genus 0 2615019 912 no rank 1 species Olleya sp. Bg11-27 1 0 2058135 912 76 0 16362 237 Flavobacterium genus 9 1 0 996 2793 species Flavobacterium columnare 1 Flavobacterium gilvum species 1 0 1492737 1770 1119 0 1763534 1 species Flavobacterium crassostreae 1525 0 1306519 1 Flavobacterium commune species 1 species Flavobacterium branchiophilum 0 1373 55197 1 Flavobacterium johnsoniae species 0 4295 986 0 312277 2121 Flavobacterium indicum species 1 1 species Flavobacterium psychrophilum 0 1290 96345 genus Muricauda 1 3 3 0 1892 111500 111501 0 996 1 Muricauda ruestringensis species species Muricauda lutaonensis 1 0 516051 893 10 6107 0 104267 genus Tenacibaculum 1 5 Tenacibaculum dicentrarchi species 1 1175 0 669041 Tenacibaculum todarodis species 1 1828 0 1850252 Tenacibaculum maritimum species 1 0 1207 107401 species Tenacibaculum jejuense 1 1887 0 584609 1 genus 0 1312 1649495 1 no rank 0 2622645 1312 1 Seonamhaeicola sp. S2-3 species 1312 0 1936081 1 2 Siansivirga genus 0 1260 1204360 1 1259 0 762954 1 species Siansivirga zeaxanthinifaciens 2 1 Robiginitalea genus 0 252306 1744 9 0 1735 252307 1 Robiginitalea biformata species 0 216431 1359 1 genus 0 313588 1359 Croceibacter atlanticus species 1 0 2523 286104 2 genus 2 no rank 0 2523 2615021 1 species Winogradskyella sp. PG-2 754409 0 1466 1057 0 1936080 1 Winogradskyella sp. J14-2 species genus Salegentibacter 1 2 1 0 1651 143222 0 2633436 1650 no rank 1 0 1729720 1650 1 species Salegentibacter sp. T436 class Chitinophagia 16 1 6 17058 0 1853228 order Chitinophagales 1 15 46 17052 0 1853229 family Chitinophagaceae 1 14 444 0 563835 17006 1 2 Flavisolibacter genus 1548 0 398041 14 0 1492898 1534 species Flavisolibacter tropicus 1 genus 1 0 1769012 1798 1 no rank 0 2636138 1798 Arachidicoccus sp. BS20 species 1 0 1798 1850526 Niastella genus 1 2 3 0 2780 354354 0 2777 354356 Niastella koreensis species 1 genus Filimonas 1 2 3 0 649460 2111 species Filimonas lacunae 1 0 2108 477680 1 3 Chitinophaga genus 79328 0 4812 3 Chitinophagaceae bacterium 13 species 1 0 2135 2029983 1 Chitinophaga pinensis species 0 2674 79329 3 1 genus Niabella 0 3513 379899 10 446683 0 1828 species Niabella soli 1 0 1675 1176587 1 Niabella ginsenosidivorans species Saprospiria class 7 1 42 0 1937959 3091 order Saprospirales 6 1 5 0 1936988 3049 2 family 0 2172 1937961 1 2 genus Haliscomenobacter 0 2349 2172 10 0 2350 2162 species Haliscomenobacter hydrossis 1 872 0 89374 1 3 1 family Saprospiraceae genus Saprospira 1 2 6 0 1007 871 Saprospira grandis species 1 1008 0 865 0 16520 1090 phylum 22 22 1 class Chlorobia 0 16520 191410 81 order Chlorobiales 1 21 132 16439 0 191411 20 1 family Chlorobiaceae 16307 0 191412 239 65 0 256319 5156 Chlorobaculum genus 1 4 Chlorobaculum tepidum species 1 0 1097 1410 0 274539 1767 Chlorobaculum parvum species 1 0 274537 1914 1 Chlorobaculum limnaeum species 0 274493 6087 no rank 8 genus Chlorobium 1 5 5 0 3597 1091 species Chlorobium limicola 1 0 1092 902 1 species Chlorobium phaeovibrioides 0 693 1094 0 787 337090 Chlorobium chlorochromatii species 1 1 Chlorobium phaeobacteroides species 0 1210 1096 1 3 genus Pelodictyon 0 2490 1099 16 species Pelodictyon phaeoclathratiforme 1 0 985 34090 1 Pelodictyon luteolum species 0 1489 1100 1 2 Chloroherpeton genus 1043 0 100715 8 species Chloroherpeton thalassium 1 100716 0 1035 32 0 1101 3782 Prosthecochloris genus 1 5 no rank 3 2975 0 2632826 0 281093 1339 species Prosthecochloris sp. GSB1 1 species Prosthecochloris sp. HL-130-GSB 1 0 931 1974213 705 0 1868325 1 species Prosthecochloris sp. CIB 2401 1 Prosthecochloris aestuarii species 0 1102 775 8 phylum 0 1134404 2702 0 2702 795747 13 1 8 Ignavibacteria class 0 795748 2689 13 7 1 order Ignavibacteriales 0 1334117 1200 9 1 3 family Melioribacteraceae 1 2 genus Melioribacter 0 1191 1134403 9 species Melioribacter roseus 1 0 1182 1134405 1 795749 0 1476 family Ignavibacteriaceae 3 1 2 1 Ignavibacterium genus 1475 0 795750 1 1 Ignavibacterium album species 0 591197 1474 0 1905416 1224 920 1 2017 phylum Proteobacteria 1827 0 471064 28211 Alphaproteobacteria class 1 561 3 1 Parvularculales order 0 549 255473 2 family 2 0 547 255474 Parvularcula genus 2 1 1 0 208215 547 0 546 208216 1 Parvularcula bermudensis species 2284 0 204888 356 Rhizobiales order 212 1 7 1 Xanthobacteraceae family 0 5329 335928 66 Azorhizobium genus 1 2 41 2040 0 6 7 0 1999 Azorhizobium caulinodans species 1 36 279 0 1681 Xanthobacter genus 2 1 0 280 1645 Xanthobacter autotrophicus species 1 39 0 1542 152053 Starkeya genus 2 1 1 species Starkeya novella 0 921 1503 family Brucellaceae 20 1 28 0 118882 8194 genus Brucella 1 14 1704 0 234 3886 0 236 38 1 species Brucella ovis species Brucella abortus 1 235 0 106 1 Brucella ceti species 0 120577 193 0 120576 189 1 Brucella pinnipedialis species Brucella melitensis species 1 0 110 29459 0 36855 168 species Brucella canis 1 0 2632610 952 4 no rank 1 species Brucella sp. 09RB8910 0 1844051 251 340 0 1885919 Brucella sp. 141012304 species 1 Brucella sp. 2002734562 species 1 65 0 1891098 0 1149952 296 1 Brucella sp. 09RB8471 species Brucella vulpis species 1 285 0 981386 29461 0 81 Brucella suis species 1 Brucella microti species 1 0 444163 60 genus Ochrobactrum 1 5 64 0 4280 528 0 1016 419475 1 species Ochrobactrum pseudogrignonense Ochrobactrum anthropi species 1 0 529 1104 1 Ochrobactrum sp. A44 species 0 271865 1113 0 571256 983 Ochrobactrum pituitosum species 1 20 1 Phyllobacteriaceae family 0 69277 20555 131 15 449972 0 933 Chelativorans genus 1 2 1 no rank 0 2643807 918 0 266779 918 1 Chelativorans sp. BNC1 species Hoeflea genus 1 2 9 0 274591 887 no rank 1 0 878 2614931 1 Hoeflea sp. IMCC20628 species 0 1620421 878 2 1 Nitratireductor genus 0 1037 245876 22 0 472175 1015 Nitratireductor basaltis species 1 2 1 Phyllobacterium genus 0 28100 1401 10 species Phyllobacterium zundukense 1 1867719 0 1391 0 31988 1927 33 1 2 genus Aminobacter 83263 0 1894 1 Aminobacter aminovorans species 983 0 68287 14239 genus Mesorhizobium 1 9 0 1436 536018 1 Mesorhizobium australicum species 1 Mesorhizobium sp. B7 species 0 976 1670800 0 2272 39645 1 species Mesorhizobium ciceri Mesorhizobium loti species 1 381 0 1766 71433 0 1569 Mesorhizobium amorphae species 1 0 593909 1600 species Mesorhizobium opportunistum 1 0 1858 325217 1 no rank species Mesorhizobium sp. WSM1497 1 0 1858 278153 0 2066070 1779 Mesorhizobium japonicum species 1 3 0 119043 795 family Rhodobiaceae 1 3 256616 0 792 16 2 1 genus Parvibaculum species Parvibaculum lavamentivorans 1 776 0 256618 family Methylocystaceae 1 6 20 31993 0 2743 0 1132 425 19 1 2 Methylosinus genus 0 426 1113 Methylosinus trichosporium species 1 3 1 genus Methylocystis 0 1591 133 68 1 no rank 638 0 2625913 1 Methylocystis sp. SC2 species 0 187303 638 0 885 655015 1 species Methylocystis bryophila 772 0 6899 10 18 1 Bartonellaceae family genus Bartonella 1 17 114 773 0 6889 0 38323 301 species Bartonella henselae 1 0 56426 410 1 Bartonella clarridgeiae species 0 388640 229 species Bartonella australis 1 0 774 654 1 species Bartonella bacilliformis 0 1686310 1396 Bartonella apis species 1 0 277 803 species Bartonella quintana 1 0 229 33047 1 species Bartonella vinsonii species Bartonella tribocorum 1 0 525 85701 33045 0 396 1 species Bartonella grahamii 6 no rank 0 2645622 1985 0 1933904 490 1 Bartonella sp. WD16.2 species Bartonella sp. A1379B species 1 0 275 1933910 0 258 1933906 1 Bartonella sp. JB15 species 0 515256 438 1 species Bartonella sp. 1-1C 1 Bartonella sp. Raccoon60 species 0 1933912 266 0 258 1933907 species Bartonella sp. JB63 1 1318743 0 373 1 species Bartonella ancashensis 0 82115 69497 703 55 1 Rhizobiaceae family 0 227290 49899 no rank 36 Neorhizobium genus 2 1 12 0 1525371 2748 0 2736 399 Neorhizobium galegae species 1 2701 34642 0 379 Rhizobium genus 27 1 1 Rhizobium leguminosarum species 384 0 7880 1 species Rhizobium tropici 0 1315 398 no rank 21 2613769 0 14921 0 2048897 1339 1 Rhizobium sp. NXC24 species species Rhizobium sp. Y9 1 1374 0 1914541 0 1703967 7 Rhizobium sp. N741 species 1 1 species Rhizobium sp. N621 0 4 1703964 1 species Rhizobium sp. N871 0 1703968 2 Rhizobium sp. TAL182 species 1 0 193 2020313 Rhizobium sp. CIAT894 species 1 1022 0 2020312 0 1015 1125847 1 species Rhizobium sp. NT-26 1 species Rhizobium sp. N1314 0 187 1703961 1 Rhizobium sp. N1341 species 0 10 1703962 species Rhizobium sp. N324 1 0 1010 1703969 1869170 0 1230 Rhizobium sp. S41 species 1 0 1703966 187 1 species Rhizobium sp. N731 1 species Rhizobium sp. NXC14 1981173 0 906 species Rhizobium sp. IRBG74 1 1272 0 424182 1 Rhizobium sp. N113 species 0 4 1703960 Rhizobium sp. Kim5 species 1 0 1027 2020311 1 Rhizobium sp. 10195 species 0 2028343 1505 species Rhizobium sp. N6212 1 0 1703965 4 0 1571470 1647 1 species Rhizobium sp. ACO-34A 0 976 1301032 species Rhizobium sp. IE4771 1 species Rhizobium phaseoli 1 0 2062 396 0 3568 29449 1 species Rhizobium etli Rhizobium gallicum species 1 2195 0 56730 195 0 357 12509 Agrobacterium genus 7 1 359 0 1493 1 species Agrobacterium rhizogenes 0 2668 2632611 no rank 2 1323 0 861208 1 species Agrobacterium sp. H13-3 1842536 0 1345 1 Agrobacterium sp. RAC06 species species group 2 0 6732 1183400 0 5141 358 1 species Agrobacterium tumefaciens 0 1176649 1591 1 Agrobacterium fabrum species 0 1421 373 1 Agrobacterium vitis species Shinella genus 2 1 21 0 2084 323620 0 2063 2643062 1 no rank Shinella sp. HZN7 species 1 0 879274 2063 0 14947 227292 10 no rank 50 0 106591 3245 genus Ensifer 1 3 species Ensifer adhaerens 1 1823 0 106592 0 716925 1372 species Ensifer sojae 1 253 0 28105 11702 Sinorhizobium genus 1 7 1 species Sinorhizobium meliloti 0 382 2582 0 1064 110321 Sinorhizobium medicae species 1 no rank 2 0 2833 2613772 species Sinorhizobium sp. CCBAU 05631 1 0 1092 794846 1 Sinorhizobium sp. RAC02 species 0 1842534 1741 0 663276 3025 1 species group 1 Sinorhizobium fredii species 0 3025 380 0 194963 1945 Sinorhizobium americanum species 1 Liberibacter genus 1 6 25 0 34019 1864 0 565 1273132 species Liberibacter crescens 1 1 Candidatus Liberibacter africanus species 34020 0 300 species Candidatus Liberibacter americanus 1 0 306 309868 1 species Candidatus Liberibacter solanacearum 0 556287 375 1 Candidatus Liberibacter asiaticus species 0 34021 293 5 1 family Beijerinckiaceae 0 1668 45404 13 30 885 0 120652 Methylocella genus 1 2 species Methylocella silvestris 1 0 855 199596 0 532 770 13 1 2 genus Beijerinckia 0 757 533 species Beijerinckia indica 1 15 1 Methylobacteriaceae family 0 119045 23200 129 746 0 13707 407 genus Methylobacterium 9 1 114616 0 1505 1 species Methylobacterium nodulans 0 1486 418223 1 species Methylobacterium phyllosphaerae 0 1858 31998 1 Methylobacterium radiotolerans species 1539 0 334852 species Methylobacterium oryzae 1 270351 0 1906 1 Methylobacterium aquaticum species 3 no rank 0 4667 2615210 1 species Methylobacterium sp. 4-46 1865 0 426117 1479019 0 1524 species Methylobacterium sp. C1 1 0 925818 1278 species Methylobacterium sp. AMS5 1 3 genus 7655 0 2282523 4158 0 408 species Methylobacterium extorquens 1 Methylobacterium zatmanii species 1 29429 0 1193 1 Methylobacterium populi species 0 2304 223967 37 0 186650 1709 genus Microvirga 2 1 0 1672 1882682 Microvirga ossetica species 1 49 0 255475 5781 Aurantimonadaceae family 7 1 Martelella genus 4 1 103 0 293088 4511 no rank 1 1370 0 2629616 species Martelella sp. AD-3 1 0 686597 1370 1 species Martelella endophytica 0 1616 1486262 293089 0 1422 1 species Martelella mediterranea 20 0 414371 1221 genus Aureimonas 2 1 no rank 1 2615206 0 1201 0 1201 1349819 species Aureimonas sp. AU20 1 0 37720 41294 480 1 26 Bradyrhizobiaceae family Bosea genus 5 1 115 0 5826 85413 1 species Bosea vaviloviae 1478 0 1526658 no rank 3 0 4233 2653178 1 Bosea sp. RAC05 species 1418 0 1842539 1792307 0 1277 1 Bosea sp. PAMC 26642 species 0 2015316 1538 Bosea sp. AS-1 species 1 0 1649510 871 16 1 2 Variibacter genus 0 855 1333996 species Variibacter gotjawalensis 1 2 1 genus Rhodopseudomonas 0 8642 1073 63 0 1076 8579 1 Rhodopseudomonas palustris species 1 2 Oligotropha genus 0 939 40136 13 1 Oligotropha carboxidovorans species 0 926 40137 Bradyrhizobium genus 11 1 478 19553 0 374 0 375 3076 1 species Bradyrhizobium japonicum Bradyrhizobium icense species 1 0 1274631 1204 no rank 6 0 10012 2631580 114615 0 1824 species Bradyrhizobium sp. ORS 278 1 0 288000 1522 species Bradyrhizobium sp. BTAi1 1 Bradyrhizobium sp. species 1 1544 0 376 0 115808 1749 Bradyrhizobium sp. ORS 285 species 1 0 1223566 1835 1 species Bradyrhizobium sp. CCGE-LA001 1538 0 2057741 Bradyrhizobium sp. SK17 species 1 Bradyrhizobium diazoefficiens species 1 0 3038 1355477 0 1745 44255 1 species Bradyrhizobium oligotrophicum 3 1 genus Nitrobacter 0 1409 911 14 0 913 654 species Nitrobacter winogradskyi 1 species Nitrobacter hamburgensis 1 0 741 912 Hyphomicrobiaceae family 1 19 117 13630 0 45401 111 0 46913 4099 Devosia genus 4 1 3 no rank 0 3988 196773 1 species Devosia sp. H5989 1525 0 1643450 1736675 0 1516 species Devosia sp. A16 1 1 Devosia sp. I507 species 0 947 2083786 1 4 Hyphomicrobium genus 0 4194 81 38 no rank 1 0 2619925 1247 0 717785 1247 Hyphomicrobium sp. MC1 species 1 species Hyphomicrobium denitrificans 1 0 1644 53399 0 1265 1427356 1 species Hyphomicrobium nitrativorans 2 1 genus Blastochloris 0 1236 59282 27 1 species Blastochloris viridis 1209 0 1079 Rhodoplanes genus 1 2 52 1836 0 29407 1784 0 2619116 1 no rank 1 species Rhodoplanes sp. Z2-YC6860 0 1784 674703 2 0 452 119044 genus Filomicrobium 2 1 Candidatus Filomicrobium marinum species 1 0 1608628 450 genus Rhodomicrobium 1 2 25 891 0 1068 0 1069 866 1 species Rhodomicrobium vannielii Pelagibacterium genus 1 2 6 0 1082930 805 0 531813 799 1 Pelagibacterium halotolerans species 0 3421 119042 6 no rank 13 0 1484898 812 genus Methyloceanibacter 1 2 1 species Methyloceanibacter caenitepidi 0 799 1384459 Pseudorhodoplanes genus 2 1 29 0 1168 1734920 Pseudorhodoplanes sinuspersici species 1 0 1139 1235591 0 1572860 1441 16 1 2 genus Hartmannibacter 1 species Hartmannibacter diazotrophicus 0 1482074 1425 21 0 2036754 3172 Chelatococcaceae family 1 4 3 1 genus Chelatococcus 0 28209 3151 78 no rank 1 0 1892 2638111 1892 0 1702325 Chelatococcus sp. CO-6 species 1 0 444444 1181 Chelatococcus daeguensis species 1 0 2800060 1938 order 5 25 0 69657 1938 Hyphomonadaceae family 5 1 Hyphomonas genus 1 3 33 0 85 1468 Hyphomonas neptunium species 1 0 81032 816 619 0 2630699 no rank 1 0 619 1906738 1 Hyphomonas sp. Mor2 species 1 genus 0 2723 445 1 Hirschia baltica species 0 445 2724 8 1 order Pelagibacterales 54526 0 3831 1 family Pelagibacteraceae 6 1 1 0 1655514 3023 0 1655516 1750 no rank 2 alpha proteobacterium HIMB5 species 1 0 859653 1210 alpha proteobacterium HIMB59 species 1 540 0 744985 1 3 genus Candidatus Pelagibacter 0 1272 198251 5 0 703 198252 species Candidatus Pelagibacter ubique 1 1 no rank 0 2647897 564 species Candidatus Pelagibacter sp. IMCC9063 1 564 0 1002672 1 genus 0 807 2045213 0 807 1925548 1 species Candidatus Fonsibacter ubiquis 54 766 0 16944 order Rickettsiales 53 1 0 8454 775 3 28 1 Rickettsiaceae family genus Candidatus Phycorickettsia 2 1 3 0 940 2115980 0 2115978 937 Candidatus Phycorickettsia trachydisci species 1 25 tribe 0 33988 7511 653 6451 0 780 genus Rickettsia 23 1 1085 0 1129742 species group 2 1 species Rickettsia canadensis 509 0 788 1 species Rickettsia bellii 0 576 33990 0 698 114292 species group 2 0 782 332 species Rickettsia prowazekii 1 0 366 785 1 Rickettsia typhi species 114277 0 3403 species group 17 1 Rickettsia felis species 0 42862 289 0 35791 135 1 Rickettsia massiliae species 786 0 553 1 Rickettsia akari species Rickettsia africae species 1 0 35 35788 0 35790 156 species Rickettsia japonica 1 0 1105106 156 1 species Rickettsia philipii 1 species Rickettsia conorii 0 781 28 1 Rickettsia rickettsii species 62 0 783 36 0 35794 Rickettsia slovaca species 1 1 species Rickettsia heilongjiangensis 0 109 226665 0 109232 549 Rickettsia monacensis species 1 Rickettsia peacockii species 1 0 47589 267 0 23 35792 Rickettsia parkeri species 1 1 species Rickettsia australis 0 610 787 species Rickettsia rhipicephali 1 0 33992 121 species Rickettsia amblyommatis 1 0 33989 212 1 Rickettsia montanensis species 0 33991 62 no rank 1 0 612 114295 1 Rickettsia endosymbiont of Bemisia tabaci species 0 612 337479 0 1060 69474 2 2 1 genus Orientia 0 1058 784 1 species Orientia tsutsugamushi 0 1699067 931 1 no rank 0 931 1528098 Rickettsiales bacterium Ac37b species 1 Anaplasmataceae family 1 22 18 0 7113 942 genus Ehrlichia 1 6 31 0 3122 943 0 331 106181 1 no rank 1 species Ehrlichia sp. HF 0 391036 331 0 2760 106178 4 species group 0 944 904 species Ehrlichia canis 1 1 Ehrlichia ruminantium species 779 0 1024 1 species Ehrlichia chaffeensis 0 945 425 1 Ehrlichia muris species 0 35795 407 tribe 8 952 0 2887 2887 0 953 127 8 1 genus Wolbachia 0 2640676 2760 no rank 7 0 100901 119 1 species Wolbachia endosymbiont of Onchocerca ochengi 0 185 77551 Wolbachia endosymbiont of Onchocerca volvulus species 1 Wolbachia endosymbiont of Drosophila melanogaster species 1 0 429 163164 Wolbachia endosymbiont of Brugia malayi species 1 0 540 80849 1 species Wolbachia sp. wRi 0 66084 402 351 0 246273 1 Wolbachia endosymbiont of Cimex lectularius species Wolbachia endosymbiont of Drosophila simulans species 1 0 77038 734 2 0 33993 588 genus Neorickettsia 4 1 0 187 33994 Neorickettsia helminthoeca species 1 1 species Neorickettsia risticii 950 0 217 182 0 951 Neorickettsia sennetsu species 1 0 498 768 genus 3 species Anaplasma marginale 1 0 770 118 0 769 164 species Anaplasma centrale 1 species group 1 0 106179 216 1 Anaplasma phagocytophilum species 0 948 216 0 1328881 392 family 1 0 411566 392 1 genus 1 Candidatus Midichloria mitochondrii species 0 392 234827 520 204457 0 70621 order Sphingomonadales 82 1 family Sphingomonadaceae 59 1 1013 0 41297 55056 3 1 Sphingorhabdus genus 0 1434046 1711 37 1674 0 2614947 2 no rank species Sphingorhabdus sp. YGSMI21 1 658 0 2077182 1806885 0 1016 species Sphingorhabdus sp. M41 1 2 1 Citromicrobium genus 0 898 72173 44 854 0 2630544 1 no rank species Citromicrobium sp. JL477 1 0 854 1634516 genus Novosphingobium 1 5 79 0 4723 165696 0 1272 158500 1 Novosphingobium resinovorum species species Novosphingobium aromaticivorans 1 0 48935 1230 1 no rank 2644732 0 1114 0 702113 1114 species Novosphingobium sp. PP1Y 1 0 1028 205844 1 species Novosphingobium pentaromativorans 1 2 genus Rhizorhabdus 0 1649486 1227 11 0 1216 1850238 Rhizorhabdus dicambivorans species 1 genus 1 0 688 2709685 1 species Sphingorhabdus flavimaris 688 0 266812 0 17168 13687 419 1 15 Sphingomonas genus 0 93064 916 species Sphingomonas koreensis 1 6 no rank 7023 0 196159 1098 0 1961362 Sphingomonas sp. NIC1 species 1 0 1938607 1090 1 species Sphingomonas sp. LM7 0 1327635 1053 1 Sphingomonas sp. Cra20 species 0 1390395 1463 1 Sphingomonas sp. LK11 species 1 Sphingomonas sp. KC8 species 0 1163 1030157 1 Sphingomonas sp. MM-1 species 1156 0 745310 1534 160791 0 2922 species Sphingomonas wittichii 1 2 0 1388 1283312 1 strain Sphingomonas sp. DC-6 1040 0 152682 species Sphingomonas melonis 1 0 977 1609977 Sphingomonas hengshuiensis species 1 Sphingomonas panacis species 1 1560345 0 1036 Sphingomonas taxi species 1 0 1370 1549858 397260 0 1465 species Sphingomonas sanxanigenens 1 0 8738 165697 276 1 10 genus Sphingopyxis 0 1112 267128 1 Sphingopyxis granuli species 1 Sphingopyxis terrae species 0 33052 714 0 1515612 811 Sphingopyxis fribergensis species 1 4 no rank 0 3300 2614943 Sphingopyxis sp. LPB0140 species 1 1913578 0 433 0 871 292913 1 species Sphingopyxis sp. 113P3 0 963 1357916 1 species Sphingopyxis sp. QXT-31 0 1866325 1033 Sphingopyxis sp. MG species 1 Sphingopyxis macrogoltabida species 1 33050 0 1684 0 117207 841 1 Sphingopyxis alaskensis species 15 1 Sphingobium genus 14552 0 165695 359 0 76947 953 1 Sphingobium herbicidovorans species 0 120107 1343 1 species Sphingobium cloacae species Sphingobium indicum 1 332055 0 1051 1 Sphingobium yanoikuyae species 0 1117 13690 0 332056 916 1 species Sphingobium japonicum 1 Sphingobium hydrophobicum species 0 949 1673076 0 2611147 5773 6 no rank 0 1265 484429 1 species Sphingobium sp. YBL2 0 1315974 1097 Sphingobium sp. TKS species 1 0 407020 703 1 species Sphingobium sp. MI1205 720 0 1855519 species Sphingobium sp. EP60837 1 1 species Sphingobium sp. SYK-6 0 627192 988 Sphingobium sp. RAC03 species 1 0 1000 1843368 1 Sphingobium chlorophenolicum species 0 1086 46429 0 1332080 1005 Sphingobium baderi species 1 23 0 2036 541 genus Zymomonas 2 1 0 542 2013 1 species Zymomonas mobilis genus Blastomonas 2 1 22 1156 0 150203 0 2626550 1134 1 no rank 0 1134 1842535 Blastomonas sp. RAC04 species 1 genus 1 0 2685927 1146 species Sphingomonas sp. JJ-A5 1 0 1921510 1146 351 0 15045 335929 Erythrobacteraceae family 1 22 0 4110 2800788 no rank 6 1 3 genus Porphyrobacter 1111 0 1801 65 0 2683265 1736 2 no rank 0 1896196 774 1 species Porphyrobacter sp. LM 6 1 species Porphyrobacter HT-58-2 0 2023229 962 198 0 2309 1041 genus Erythrobacter 3 1 0 1112 879 species Porphyrobacter neustonensis 1 39960 0 1232 Erythrobacter litoralis species 1 genus 2 0 1247 2800681 0 749 502682 species Erythrobacter gangjinensis 1 1 species Erythrobacter atlanticus 0 1648404 498 0 918 2800682 genus 1 species Altererythrobacter namhicola 1 0 918 645517 1 4 genus Altererythrobacter 0 361177 2766 169 0 819 361183 Altererythrobacter epoxidivorans species 1 0 476157 853 species Altererythrobacter ishigakiensis 1 0 925 1267766 1 Altererythrobacter atlanticus species genus Croceicoccus 1 3 64 0 1295327 1816 0 991 450378 1 species Croceicoccus marinus 1 Croceicoccus naphthovorans species 0 1348774 761 1855416 0 1686 2 genus Erythrobacter flavus species 1 0 192812 861 825 0 266951 1 Erythrobacter seohaensis species genus 2 0 1355 2800686 0 692370 680 Altererythrobacter dongtanensis species 1 1 Altererythrobacter mangrovi species 1982042 0 675 1 genus 0 2800685 796 species Altererythrobacter marensis 1 796 0 543877 order Holosporales 6 1 12 0 1515 1921002 family 1 0 44746 874 0 874 204454 no rank 1 874 0 86106 endosymbiont of Acanthamoeba sp. UWC8 species 1 0 2100208 386 1 family 0 386 1509243 1 genus Candidatus Nucleicultrix amoebiphila species 1 0 1509244 386 4 0 1777752 243 family Candidatus Paracaedibacteraceae 3 1 1521255 0 239 1 2 1 genus Candidatus Paracaedibacter 1 species Candidatus Paracaedibacter acanthamoebae 0 91604 238 0 204455 77550 423 1 92 order Rhodobacterales 1434 0 31989 77127 family Rhodobacteraceae 91 1 180 0 11599 265 genus Paracoccus 1 9 1252 0 1077935 1 Paracoccus zhejiangensis species 0 147645 2112 1 Paracoccus yeei species 1101 0 34003 Paracoccus aminophilus species 1 0 2065379 1177 1 Paracoccus sp. CBA4604 species 1 no rank 0 979 246570 species Paracoccus sp. BM15 1 0 1529068 979 0 1197 1945662 Paracoccus contaminans species 1 Paracoccus denitrificans species 1 2059 0 266 0 1542 34004 Paracoccus aminovorans species 1 genus Roseovarius 1 2 2 74030 0 828 Roseovarius mucosus species 1 0 215743 826 1 2 genus Antarctobacter 0 1001 74032 2 species Antarctobacter heliothermus 1 0 74033 999 110 1060 0 7333 genus Rhodobacter 5 1 2 no rank 0 2217 196779 2033869 0 1258 species Rhodobacter sp. CZR27 1 0 959 1850250 1 Rhodobacter sp. LPB0142 species 1 species Rhodobacter sphaeroides 0 1063 3519 1 species Rhodobacter capsulatus 1061 0 1487 genus 1 0 628 1759396 1 no rank 0 2622455 628 Marivivens sp. JLT3646 species 1 0 1920883 628 Celeribacter genus 5 1 44 875170 0 4055 0 1156 1758178 Celeribacter ethanolicus species 1 0 1208324 1220 species Celeribacter indicus 1 0 437 1397108 1 Celeribacter marinus species 1 Celeribacter manganoxidans species 1411902 0 1198 0 263377 3481 genus 2 species Thiobacimonas profunda 1 0 1693 1229727 1 no rank 0 1788 2640570 Yangia sp. CCB-MM3 species 1 0 1788 1792508 16 367771 0 1670 genus Marinovum 2 1 1 species Marinovum algicola 1654 0 42444 no rank 2 0 1712 58840 0 649 1904441 Rhodobacteraceae bacterium species 1 1 species Rhodobacteraceae bacterium QY30 0 1063 2033435 0 1492 53945 16 1 4 Octadecabacter genus species Octadecabacter antarcticus 1 0 1217908 552 0 1458307 446 1 species Octadecabacter temperatus 1 Octadecabacter arcticus species 0 478 53946 0 285107 1039 4 2 1 genus Thioclava 1035 0 1915078 Thioclava nitratireducens species 1 3 1 genus Sulfitobacter 0 60136 2346 11 0 1094 1402135 1 species Sulfitobacter pseudonitzschiae 0 1241 196795 1 no rank 1 species Sulfitobacter sp. AM1-D1 0 1917485 1241 Ketogulonicigenium genus 1 3 33 92944 0 1847 0 826 92947 1 species Ketogulonicigenium robustum Ketogulonicigenium vulgare species 1 988 0 92945 0 1609958 1187 9 1 2 Confluentimicrobium genus no rank 1 2643318 0 1178 Confluentimicrobium sp. EMB200-NS6 species 1 0 1178 1609966 302485 0 6809 69 1 5 genus Phaeobacter 0 221822 2383 species Phaeobacter inhibens 1 0 1742 1580596 1 Phaeobacter piscinae species species Phaeobacter gallaeciensis 1 0 60890 1974 1 Phaeobacter porticola species 1844006 0 641 1164 0 2433 12 3 1 genus Roseobacter 1 species Roseobacter litoralis 0 42443 655 0 497 2434 Roseobacter denitrificans species 1 1 4 Labrenzia genus 0 4498 478070 65 no rank 2 0 2848 2648686 0 1674922 1572 species Labrenzia sp. CP4 1 0 1276 2021862 1 species Labrenzia sp. VG12 0 1585 187304 1 Labrenzia aggregata species 0 980 1649279 genus 1 species Ruegeria mobilis 1 0 980 379347 Sagittula genus 2 1 5 0 2180 58842 1 no rank 0 2175 2624628 0 2175 2009329 1 Sagittula sp. P11 species genus 1 0 2211641 1086 Loktanella vestfoldensis species 1 0 245188 1086 299261 0 983 1 2 1 genus Tateyamaria 1 species Tateyamaria omphalii 0 982 299262 genus Dinoroseobacter 2 1 2 0 1181 309512 1 Dinoroseobacter shibae species 0 215813 1179 genus Rhodovulum 1 4 55 0 34008 4663 0 2339 2631432 no rank 2 1 Rhodovulum sp. P5 species 0 1564506 1118 0 1221 308754 1 species Rhodovulum sp. MB263 0 2269 35806 1 species Rhodovulum sulfidophilum 1 genus 0 119541 712 441209 0 712 species Rhodobaca barguzinensis 1 13 0 1506 1097466 genus Defluviimonas 1 2 1 Defluviimonas alba species 1493 0 1335048 0 867 188905 2 2 1 Jannaschia genus 1 no rank 0 2645469 865 0 290400 865 Jannaschia sp. CCS1 species 1 2 1 Roseibacterium genus 0 1044 159345 5 0 159346 1039 1 species Roseibacterium elongatum Leisingera genus 1 2 28 0 191028 1063 0 133924 1035 Leisingera methylohalidivorans species 1 0 1579315 325 2 2 1 Halocynthiibacter genus 0 1579316 323 1 species Halocynthiibacter arcticus 2 1 genus Planktomarina 366 0 1284657 2 1284658 0 364 1 Planktomarina temperata species 2310 0 97050 32 3 1 genus Ruegeria 0 89184 1487 1 species Ruegeria pomeroyi 1 no rank 2625375 0 791 1 species Ruegeria sp. TM1040 791 0 292414 genus Pelagibaca 2 1 31 1600 0 360528 species Pelagibaca abyssi 1 0 1569 1250539 0 2127 227873 37 1 2 Pannonibacter genus 2090 0 121719 species Pannonibacter phragmitetus 1 Loktanella genus 1 0 245186 1 0 436357 10 genus Thalassococcus 1 82117 0 4358 7 no rank 0 533 62654 1 clade 1 genus 0 767891 533 767892 0 533 1 species Candidatus Puniceispirillum marinum 0 1632780 1686 47 1 2 Phreatobacter genus 0 1868589 1639 species Phreatobacter sp. S-12 1 0 958 213485 13 2 1 Micavibrio genus 945 0 349221 Micavibrio aeruginosavorus species 1 1 2 Polymorphum genus 1181 0 991903 18 1 species Polymorphum gilvum 0 991904 1163 0 891 2800059 order 2 family 2 0 891 2800061 11 0 74317 891 Maricaulis genus 1 2 1 Maricaulis maris species 880 0 74318 order Caulobacterales 20 1 152 21278 0 204458 76892 0 21126 298 1 19 family Caulobacteraceae 2 1 Phenylobacterium genus 0 20 1588 18 0 1570 284016 1 species Phenylobacterium zucineum 0 41275 6497 215 1 7 genus Brevundimonas 0 588932 1018 1 Brevundimonas naejangsanensis species 913 0 41276 Brevundimonas vesicularis species 1 1 Brevundimonas subvibrioides species 0 74313 1057 3 no rank 0 2622653 3294 0 1307 1938605 1 Brevundimonas sp. LM2 species 1 Brevundimonas sp. GW460-12-10-14-LB2 species 0 1827469 999 0 1532555 988 1 Brevundimonas sp. DS20 species 0 75 10843 168 1 6 Caulobacter genus 0 155892 3551 1 Caulobacter vibrioides species 2648921 0 2520 no rank 1 species Caulobacter sp. K31 1 366602 0 2520 species Caulobacter segnis 1 0 88688 1830 1470 0 69666 1 species Caulobacter mirabilis 1 species Caulobacter henricii 69395 0 1304 1 no rank 0 81440 686 Caulobacteraceae bacterium OTSz_A_272 species 1 0 686 1759059 26 0 76890 1214 genus Asticcacaulis 1 2 1 Asticcacaulis excentricus species 1188 0 78587 64038 0 204441 710 66 1 Rhodospirillales order 367 0 26478 433 family Acetobacteraceae 1 35 27 0 364409 2039 genus Granulibacter 2 1 0 364410 2012 1 Granulibacter bethesdensis species 176 1434011 0 3985 Komagataeibacter genus 5 1 Komagataeibacter europaeus species 1 0 33995 693 0 1177712 638 1 Komagataeibacter medellinensis species 1 species Komagataeibacter xylinus 0 1725 28448 0 753 265960 1 species Komagataeibacter nataicola 0 781 320496 9 1 2 Neoasaia genus 0 772 320497 1 Neoasaia chiangmaiensis species 3581 0 125216 71 1 3 Roseomonas genus 1 Roseomonas gilardii species 1767 0 257708 0 1743 2617492 1 no rank 0 1743 2018065 1 Roseomonas sp. FDAARGOS_362 species 1 3 Acidiphilium genus 0 2278 522 70 Acidiphilium cryptum species 1 524 0 1084 species Acidiphilium multivorum 1 0 1124 62140 7077 0 434 119 1 8 Acetobacter genus species Acetobacter tropicalis 1 0 104102 1057 0 929 446692 1 species Acetobacter senegalensis 0 496 1633874 1 species Acetobacter oryzifermentans species Acetobacter pasteurianus 1 0 438 2117 1073 0 151157 1 subgenus 0 435 1073 1 Acetobacter aceti species 1 Acetobacter pomorum species 0 549 65959 737 0 1076596 1 Acetobacter persici species 7 0 1602345 641 Parasaccharibacter genus 2 1 1510841 0 634 species Parasaccharibacter apium 1 Gluconacetobacter genus 1 2 9 0 89583 1353 0 33996 1344 1 Gluconacetobacter diazotrophicus species 0 91914 853 8 1 2 Asaia genus species Asaia bogorensis 1 0 91915 845 0 854 153497 14 2 1 Kozakia genus 0 840 153496 1 Kozakia baliensis species 94 2669 0 441 genus Gluconobacter 1 3 1 Gluconobacter albidus species 0 318683 812 0 442 1763 1 species Gluconobacter oxydans Rhodospirillaceae family 1 30 563 0 36850 41295 genus Azospirillum 5 1 301 0 13127 191 species Azospirillum lipoferum 1 0 4697 193 0 192 4303 1 species Azospirillum brasilense 0 2554 528244 Azospirillum thiophilum species 1 0 1272 1226968 1 Azospirillum humicireducens species Rhodospirillum genus 1 3 57 0 3618 1081 1 species Rhodospirillum rubrum 0 1458 1085 species Rhodospirillum centenum 1 34018 0 2103 1 2 Pararhodospirillum genus 1048 0 1612157 20 0 1084 1028 1 species Pararhodospirillum photometricum 0 487 1263978 genus 1 487 0 1263979 species Candidatus Endolissoclinum faulkneri 1 22 0 1747 1543704 Niveispirillum genus 2 1 0 1612173 1725 species Niveispirillum cyanobacteriorum 1 Tistrella genus 1 2 36 0 1867 171436 0 1831 171437 1 species Tistrella mobilis 1 2 Haematospirillum genus 0 1804663 627 10 0 617 1549855 species Haematospirillum jordaniae 1 56 0 1543705 2669 Nitrospirillum genus 1 2 28077 0 2613 1 Nitrospirillum amazonense species 5 1 Magnetospirillum genus 0 13134 7893 163 Magnetospirillum magneticum species 1 0 1922 84159 species Magnetospirillum gryphiswaldense 1 0 2330 55518 2 no rank 3478 0 2617991 species Magnetospirillum sp. ME-1 1 1639348 0 1689 Magnetospirillum sp. XM-1 species 1 0 1789 1663591 15 0 2384 168934 genus Thalassospira 1 3 species Thalassospira xiamenensis 1 1203 0 220697 Thalassospira sp. CSC3H3 species 1 1166 0 2048283 0 1182780 820 9 1 2 genus Magnetospira 1 no rank 811 0 2685734 1 Magnetospira sp. QH-2 species 0 811 1288970 0 1191478 836 23 4 1 Magnetococcales order 0 813 1191479 2 3 1 family Magnetococcaceae 2 1 Magnetococcus genus 0 162171 811 4 0 1124597 807 1 Magnetococcus marinus species class Oligoflexia 1 12 4 0 5599 1553900 order Bacteriovoracales 1 6 18 2024979 0 2632 0 1398 1652132 9 1 3 family Halobacteriovoraceae genus Halobacteriovorax 2 1 6 0 1389 1652133 1383 0 97084 1 Halobacteriovorax marinus species 0 263369 1216 2 family 0 1216 146784 7 2 1 genus Bacteriovorax 0 960 1209 1 Bacteriovorax stolpii species 14 0 213481 2963 order Bdellovibrionales 1 5 0 2949 213483 5 4 1 Bdellovibrionaceae family 13 958 0 2944 Bdellovibrio genus 3 1 Bdellovibrio exovorus species 1 0 541 453816 Bdellovibrio bacteriovorus species 1 959 0 2390 6 0 1538 580370 Zetaproteobacteria class 6 1 order Mariprofundales 1 5 7 0 580371 1532 1 4 family Mariprofundaceae 0 580372 1525 14 0 1511 377315 3 3 1 Mariprofundus genus 690 0 1921086 Mariprofundus aestuarium species 1 species Mariprofundus ferrinatatus 1 818 0 1921087 0 233972 68525 195 subphylum class Deltaproteobacteria 123 1 376 0 146972 28221 669 0 53680 29 order Myxococcales 1 38 40629 0 80811 26 suborder 169 0 11316 39 Archangiaceae family 9 1 genus Cystobacter 2 1 17 0 2994 42 0 2977 43 Cystobacter fuscus species 1 genus Stigmatella 1 2 33 2249 0 40 41 0 2216 species Stigmatella aurantiaca 1 18 0 3274 47 Archangium genus 2 1 3256 0 48 1 species Archangium gephyra 12 0 44 2630 genus Melittangium 1 2 1 Melittangium boletus species 0 2618 83453 family Vulgatibacteraceae 1 3 22 0 1524213 1728 1 2 Vulgatibacter genus 1706 0 1524214 12 0 1694 1391653 1 species Vulgatibacter incomptus 0 31 19502 93 9 1 family Myxococcaceae Corallococcus genus 3 1 111 0 83461 6307 0 35 2805 1 species Myxococcus macrosporus 1 species Corallococcus coralloides 0 184914 3391 0 13102 32 570 5 1 Myxococcus genus species Myxococcus fulvus 1 0 5261 33 1 Myxococcus hansupus species 0 1297742 2579 83455 0 2453 species Myxococcus stipitatus 1 0 2239 34 1 Myxococcus xanthus species 84 8083 0 1524215 Anaeromyxobacteraceae family 5 1 0 7999 161492 176 4 1 Anaeromyxobacter genus 1 Anaeromyxobacter dehalogenans species 161493 0 3780 no rank 2 0 2620896 4043 Anaeromyxobacter sp. K species 1 447217 0 2187 1 species Anaeromyxobacter sp. Fw109-5 0 1856 404589 0 224462 2804 suborder 3 1 3 family Kofleriaceae 0 2804 224464 17 22 0 2787 162027 genus Haliangium 1 2 0 2765 80816 1 Haliangium ochraceum species suborder 8 9578 0 80812 Polyangiaceae family 1 5 69 49 0 7651 6 0 1767 50 genus Chondromyces 2 1 0 52 1761 1 Chondromyces crocatus species 1 2 genus Sorangium 0 5815 39643 50 0 5765 56 species Sorangium cellulosum 1 11 0 1927 1055686 Sandaracinaceae family 1 3 0 1055688 1916 32 1 2 Sandaracinus genus 0 927083 1884 1 Sandaracinus amylolyticus species 0 453227 2332 30 1 4 Desulfarculales order 453228 0 2302 40 3 1 family Desulfarculaceae 35 0 453229 2262 Desulfarculus genus 2 1 0 453230 2227 1 species Desulfarculus baarsii 0 213113 1569 order 5 family Desulfurellaceae 5 1 9 117942 0 1569 2 1 Hippea genus 0 84404 454 5 0 84405 449 species Hippea maritima 1 0 33001 1106 4 1 2 Desulfurella genus 0 1102 33002 Desulfurella acetivorans species 1 1 17 Desulfobacterales order 0 11221 213118 79 0 213119 6463 83 1 8 Desulfobacteraceae family Desulfococcus genus 1 3 12 0 2734 896 0 1334 181663 species Desulfococcus oleovorans 1 1388 0 897 1 species Desulfococcus multivorans 1 genus 218207 0 1507 0 259354 1507 species Desulfatibacillum alkenivorans 1 Desulfobacterium genus 1 2 3 1020 0 2295 Desulfobacterium autotrophicum species 1 0 1017 2296 genus 1 0 1119 28222 0 1119 28223 species Desulfobacula toluolica 1 Desulfobulbaceae family 8 1 28 0 4679 213121 427922 0 1446 6 2 1 genus Desulfurivibrio Desulfurivibrio alkaliphilus species 1 0 1440 427923 0 109168 689 1 genus 0 84980 689 Desulfotalea psychrophila species 1 2 1 genus Desulfocapsa 53318 0 877 6 Desulfocapsa sulfexigens species 1 0 65555 871 2 1 Desulfobulbus genus 0 1639 893 12 species Desulfobulbus sp. ORNL 1 0 1627 1986146 0 213462 3394 25 9 1 Syntrophobacterales order Syntrophaceae family 5 1 19 0 213468 2027 0 2357 664 genus 1 0 2358 664 1 Desulfomonile tiedjei species genus 1 0 547 60892 0 60893 547 1 Desulfobacca acetoxidans species 0 797 43773 8 1 2 genus Syntrophus 0 316277 789 Syntrophus aciditrophicus species 1 12 213465 0 1342 Syntrophobacteraceae family 3 1 1 2 genus Syntrophobacter 29526 0 1330 2 0 1328 119484 species Syntrophobacter fumaroxidans 1 Desulfuromonadales order 1 24 450 0 30504 69541 0 213422 19810 153 1 14 Geobacteraceae family 2 1 Geoalkalibacter genus 0 1728 392332 6 1722 0 483547 1 Geoalkalibacter subterraneus species 341 0 17929 28231 Geobacter genus 11 1 0 1193 1203471 1 Geobacter daltonii species 0 351604 1358 Geobacter uraniireducens species 1 no rank 2 0 4707 2627627 0 1949 443144 Geobacter sp. M21 species 1 443143 0 2758 1 Geobacter sp. M18 species 1355 0 28232 species Geobacter metallireducens 1 1340425 0 1981 1 Geobacter anodireducens species 1883 0 225194 Geobacter bemidjiensis species 1 1 Geobacter pickeringii species 0 1645 345632 Geobacter lovleyi species 1 313985 0 1805 0 1661 35554 Geobacter sulfurreducens species 1 246 0 10244 213421 Desulfuromonadaceae family 9 1 1 3 genus Desulfuromonas 0 3676 890 22 0 1663 1603606 1 Desulfuromonas soudanensis species no rank 1 0 2614637 1991 1 species Desulfuromonas sp. DDH964 0 1823759 1991 0 18 6322 73 1 5 genus Pelobacter 0 19 1343 species Pelobacter carbinolicus 1 0 1252 2620299 no rank 1 1 species Pelobacter sp. SFB93 0 1252 1842532 1 species Pelobacter acetylenicus 0 29542 1437 Pelobacter propionicus species 1 0 29543 2217 Desulfovibrionales order 1 25 584 0 43896 213115 Desulfovibrionaceae family 18 1 190 194924 0 38158 1 4 Pseudodesulfovibrio genus 0 6400 2035811 108 0 182210 2205 Pseudodesulfovibrio aespoeensis species 1 Pseudodesulfovibrio indicus species 1 1716143 0 2978 0 1109 57320 1 species Pseudodesulfovibrio profundus 0 2582840 2088 genus 1 0 873 2088 1 species Desulfovibrio africanus 0 1223 2794998 genus 1 0 1223 880 1 species Desulfovibrio salexigens 1344 0 41707 7 1 2 Lawsonia genus 0 29546 1337 1 species Lawsonia intracellularis genus Desulfovibrio 1 9 256 872 0 26913 0 58180 1791 1 species Desulfovibrio alaskensis 1 species Desulfovibrio vulgaris 0 6446 881 0 5312 876 1 species Desulfovibrio desulfuricans 1776 0 2593640 no rank 1 0 631220 1776 1 Desulfovibrio sp. G11 species 0 3519 44742 1 Desulfovibrio fairfieldensis species 4580 0 901 species Desulfovibrio piger 1 625 0 1725232 1 Candidatus Desulfovibrio trichonymphae species 0 2608 184917 1 species Desulfovibrio magneticus 2 1 Desulfohalobiaceae family 964 0 213117 3 genus 1 45662 0 961 0 45663 961 1 species Desulfohalobium retbaense 0 4190 213116 68 4 1 family Desulfomicrobiaceae 3 1 genus Desulfomicrobium 0 4122 898 46 Desulfomicrobium baculatum species 1 0 2022 899 0 132132 2054 1 Desulfomicrobium orale species 282 0 87000 29547 Epsilonproteobacteria class 1 72 3029 213849 0 85134 Campylobacterales order 66 1 2771471 0 2564 5 family genus Sulfuricurvum 2 1 16 0 286130 544 0 528 148813 1 species Sulfuricurvum kujiense 9 0 202746 2020 Sulfurimonas genus 1 3 0 626 39766 Sulfurimonas denitrificans species 1 Sulfurimonas autotrophica species 1 0 202747 1385 Campylobacteraceae family 41 1 6017 72294 0 70515 996 0 194 49688 genus Campylobacter 1 26 Campylobacter pinnipediorum species 1 0 1859 1965231 0 76517 424 1 Campylobacter hominis species 0 897 199 1 species Campylobacter concisus Campylobacter ureolyticus species 1 0 827 1567 Campylobacter peloridis species 1 0 1596 488546 0 345 200 species Campylobacter curvus 1 1113 0 522485 1 Campylobacter avium species 0 197 5313 species Campylobacter jejuni 1 1 species Campylobacter iguaniorum 762 0 1244531 1 Campylobacter volucris species 0 673 1031542 1 Campylobacter gracilis species 0 558 824 1 Campylobacter helveticus species 0 286 28898 17117 0 195 1 species Campylobacter coli Campylobacter cuniculorum species 1 0 374106 448 0 2593542 3387 no rank 4 1660076 0 761 1 Campylobacter sp. RM12175 species species Campylobacter sp. RM8964 1 1660074 0 864 0 1660073 308 Campylobacter sp. RM6137 species 1 Campylobacter sp. RM16704 species 1 0 1500960 1454 1 species Campylobacter insulaenigrae 0 260714 1173 Campylobacter fetus species 1 0 1920 196 0 201 3527 species Campylobacter lari 1 Campylobacter subantarcticus species 1 0 738 497724 0 206 2064 Campylobacter sputorum species 1 75658 0 1979 Campylobacter lanienae species 1 species Campylobacter hyointestinalis 1 0 198 946 46 0 57665 4670 Sulfurospirillum genus 1 9 Sulfurospirillum deleyianum species 1 65553 0 337 0 1702 2618290 3 no rank species Sulfurospirillum sp. UCH001 1 0 1581011 505 Sulfurospirillum sp. SL2-1 species 1 0 1986224 670 0 527 220622 1 species Sulfurospirillum sp. JPD-1 Sulfurospirillum halorespirans species 1 0 644 194424 0 44674 804 1 Sulfurospirillum barnesii species 0 66821 681 Sulfurospirillum multivorans species 1 456 0 366522 1 species Sulfurospirillum cavolei 0 2321108 10140 no rank 5 0 2267 2321187 genus 1 1 species Arcobacter sp. LPB0137 0 2267 1850254 0 5006 28196 19 1 3 genus Arcobacter 1 species Arcobacter nitrofigilis 0 28199 2062 Arcobacter butzleri species 1 0 2925 28197 1 no rank 2321207 0 2867 1 species Arcobacter sp. L 2867 0 944547 1 15 Helicobacteraceae family 72293 0 6463 10 Wolinella genus 1 2 1 843 0 490 1 Wolinella succinogenes species 489 0 844 0 209 5963 20 1 12 Helicobacter genus 0 37372 249 species Helicobacter bilis 1 0 212 272 1 Helicobacter acinonychis species 1 Helicobacter mustelae species 0 403 217 0 32025 446 1 species Helicobacter hepaticus 214 0 129 1 Helicobacter felis species 0 2593540 362 1 no rank 222136 0 362 Helicobacter sp. MIT 01-6242 species 1 1 Helicobacter himalayensis species 0 1591088 241 138563 0 721 1 Helicobacter cetorum species 1 Helicobacter pylori species 2459 0 210 0 76936 233 species Helicobacter typhlonius 1 species Helicobacter cinaedi 1 428 0 213 family 4 0 2771472 2563 genus Sulfurovum 1 3 11 0 265570 1745 0 206403 778 1 Sulfurovum lithotrophicum species 1 no rank 0 956 2646778 1 species Sulfurovum sp. NBC37-1 387093 0 956 0 818 269260 1 genus 269261 0 818 1 Nitratifractor salsuginis species 0 235899 1584 order 5 family Nautiliaceae 1 3 4 0 1159 224467 1 2 genus Nautilia 0 191291 1155 6 0 1149 244787 species Nautilia profundicola 1 family 2 0 425 2795691 3 0 269258 425 genus Nitratiruptor 1 2 no rank 1 0 2624044 422 387092 0 422 species Nitratiruptor sp. SB155-2 1 1236 0 795687 1963 1 885 Gammaproteobacteria class 52 1 order Chromatiales 0 28933 135613 385 Ectothiorhodospiraceae family 1 18 224 0 72276 11414 6 1 Thioalkalivibrio genus 0 5241 106633 117 1 no rank 0 900 2621013 1 species Thioalkalivibrio sp. K90mix 0 900 396595 1 Thioalkalivibrio paradoxus species 0 873 108010 0 800 186931 Thioalkalivibrio nitratireducens species 1 1 Thioalkalivibrio sulfidiphilus species 0 1580 1033854 Thioalkalivibrio versutus species 1 106634 0 971 genus Alkalilimnicola 2 1 4 133193 0 1342 1 species Alkalilimnicola ehrlichii 0 351052 1338 0 1765964 814 3 2 1 Acidihalobacter genus species Acidihalobacter prosperus 1 0 160660 811 3 1 Spiribacter genus 0 1335745 1233 31 species Spiribacter salinus 1 0 461 1335746 1335757 0 741 1 species Spiribacter curvatus Ectothiorhodospira genus 1 2 11 0 1359 1051 no rank 1 1348 0 2684909 0 1442136 1348 1 species Ectothiorhodospira sp. BSL-9 genus Halorhodospira 2 1 4 0 85108 1201 0 1197 1053 1 species Halorhodospira halophila 0 1676141 1143 17 3 1 Wenzhouxiangellaceae family 32 1676142 0 1126 genus Wenzhouxiangella 2 1 Wenzhouxiangella marina species 1 0 1579979 1094 no rank 2 451214 0 1598 1273155 0 1598 25 2 1 Thiohalobacter genus 1 species Thiohalobacter thiocyanaticus 0 1573 585455 family Chromatiaceae 1 18 150 0 11432 1046 2 1 Thiocystis genus 0 1613 13724 41 0 73141 1572 species Thiocystis violascens 1 0 1227 1196 5 1 4 genus Nitrosococcus species Nitrosococcus halophilus 1 0 319 133539 0 441 473531 Nitrosococcus watsonii species 1 0 431 1229 Nitrosococcus oceani species 1 genus Thiodictyon 1 2 16 2133 0 53392 1 species Candidatus Thiodictyon syntrophicum 0 1166950 2117 1 2 Thioflavicoccus genus 0 1285 156885 11 species Thioflavicoccus mobilis 1 0 80679 1274 no rank 1 0 82569 1467 0 1978339 1467 species Chromatiaceae bacterium 2141T.STBD.0c.01a 1 0 85076 1232 11 1 2 genus Marichromatium 0 37487 1221 1 Marichromatium purpuratum species genus Candidatus Nitrosoglobus 1 2 3 0 1980513 356 1 species Candidatus Nitrosoglobus terrae 0 1630141 353 1 2 genus Allochromatium 0 85072 2000 15 0 1049 1985 1 Allochromatium vinosum species family Granulosicoccaceae 3 1 4 0 969 449719 1 2 genus Granulosicoccus 0 437504 965 2 0 963 437505 1 Granulosicoccus antarcticus species Woeseiaceae family 1 3 1 578 0 1738654 1 2 Woeseia genus 1738655 0 577 12 Woeseia oceani species 1 0 1548547 565 1 4 family Halothiobacillaceae 0 1414 255526 5 0 109262 1409 10 3 1 Halothiobacillus genus 887 0 2636392 no rank 1 1860122 0 887 species Halothiobacillus sp. LS2 1 927 0 512 1 Halothiobacillus neapolitanus species order Legionellales 1 20 19 0 10484 118969 38 0 118968 1577 Coxiellaceae family 4 1 776 0 1300 genus 2 777 0 659 1 species Coxiella burnetii 1 no rank 0 641 2676648 325775 0 641 1 species Coxiella endosymbiont of Amblyomma americanum 0 134284 239 1 no rank 1 Coxiella-like endosymbiont species 0 1592897 239 23 0 444 8888 Legionellaceae family 1 15 1 12 genus Legionella 0 445 8349 21 Legionella fallonii species 1 0 571 96230 0 450 654 1 species Legionella longbeachae 1867846 0 671 1 Legionella clemsonensis species Legionella oakridgensis species 1 0 459 29423 1 species Legionella waltersii 0 469 66969 446 0 2777 1 Legionella pneumophila species Legionella spiritensis species 1 0 489 452 species Legionella hackeliae 1 449 0 563 0 405 2005262 1 Legionella endosymbiont of Polyplax serrata species 0 45067 304 1 species Legionella lansingensis 28087 0 966 species Legionella sainthelensi 1 Tatlockia genus 1 2 1 465 0 516 451 0 515 1 Tatlockia micdadei species 1 53 order Xanthomonadales 0 68569 135614 745 family Xanthomonadaceae 38 1 688 55929 0 32033 1 5 Lysobacter genus 0 68 7185 164 262324 0 1527 1 species Lysobacter gummosus 0 435897 2044 1 species Lysobacter capsici species Lysobacter antibioticus 1 0 84531 1650 1 species Lysobacter enzymogenes 0 1800 69 17 1 genus Xanthomonas 0 23277 338 1229 0 29447 949 1 Xanthomonas albilineans species 1 Xanthomonas euvesicatoria species 806 0 456327 0 643453 4402 2 species group 0 346 3130 species Xanthomonas citri 1 0 1272 366648 1 Xanthomonas fuscans species 1 Xanthomonas hortorum species 1000 0 56454 808 0 366650 Xanthomonas alfalfae species 1 species Xanthomonas fragariae 1 0 597 48664 Xanthomonas translucens species 1 0 2503 343 0 605 56459 1 Xanthomonas vasicola species Xanthomonas perforans species 1 0 1184 442694 species Xanthomonas campestris 1 339 0 2934 1 species Xanthomonas vesicatoria 0 1008 56460 1053 0 1985254 1 Xanthomonas phaseoli species species Xanthomonas oryzae 1 0 347 1658 species Xanthomonas axonopodis 1 53413 0 968 0 1573 56458 1 Xanthomonas sacchari species 9 1 genus Stenotrophomonas 0 40323 18476 457 0 1154 83617 species Stenotrophomonas nitritireducens 1 0 5305 196198 no rank 4 1 species Stenotrophomonas sp. MYb57 0 1333 1827305 0 1497 1904944 Stenotrophomonas sp. LM091 species 1 0 1257 2005046 Stenotrophomonas sp. WZN-1 species 1 0 1793721 1218 species Stenotrophomonas sp. KCTC 12332 1 2324 0 128780 Stenotrophomonas acidaminiphila species 1 0 216778 1267 1 Stenotrophomonas rhizophila species 0 995085 7969 1 species group 0 40324 7969 Stenotrophomonas maltophilia species 1 0 4302 83618 84 1 3 Pseudoxanthomonas genus species Pseudoxanthomonas spadix 1 0 1389 415229 1 species Pseudoxanthomonas suwonensis 0 2829 314722 0 2370 690 genus 1 Xylella fastidiosa species 1 2371 0 690 genus Luteimonas 1 2 20 0 1311 83614 0 1291 2006110 1 Luteimonas sp. 100111 species 14 1 family Rhodanobacteraceae 0 1775411 11895 204 5 980 0 70411 Frateuria genus 1 2 species Frateuria aurantia 1 0 81475 975 4 1 Dyella genus 0 5310 231454 94 1379159 0 1476 1 Dyella jiangningensis species species Dyella thiooxydans 1 0 445710 1859 0 1881 231455 1 Dyella japonica species 2233801 0 770 genus 1 1 Xanthomonadales bacterium D13 species 0 2021234 770 Rhodanobacter genus 2 1 21 75309 0 1711 0 666685 1690 1 species Rhodanobacter denitrificans 0 1608 323413 29 2 1 Dokdonella genus 1 Dokdonella koreensis species 0 1579 323415 22 242605 0 1312 genus Luteibacter 2 1 1 species Luteibacter rhizovicinus 0 242606 1290 1 35 Thiotrichales order 0 22439 72273 7 Francisellaceae family 15 1 13 0 16789 34064 0 15911 262 213 1 12 Francisella genus 1 Francisella noatunensis species 657445 0 1432 0 1542390 1287 1 Francisella sp. CA97-1460 species 0 954 1037 1 species Francisella persica 3042 0 263 Francisella tularensis species 1 0 1112 573569 1 species Francisella sp. TX077308 0 1071 622488 Francisella hispaniensis species 1 0 886 573570 1 Francisella sp. TX077310 species 0 28110 2794 species Francisella philomiragia 1 0 549298 906 1 Francisella halioticida species 2 no rank 2610885 0 2131 0 1165 475375 1 Francisella sp. MA067296 species 0 1547445 966 1 species Francisella sp. FSC1006 1 0 865 1869285 genus Allofrancisella 2 1 0 594679 864 1 Allofrancisella guangzhouensis species family Thiotrichaceae 1 4 29 0 135617 955 1 genus 0 40751 395 0 395 40754 1 Thioploca ingrica species genus Beggiatoa 2 1 2 0 1021 531 0 288004 529 species Beggiatoa leptomitoformis 1 0 4688 135616 33 15 1 Piscirickettsiaceae family 3 0 1000 40222 Methylophaga genus 1 3 416 0 754477 1 Methylophaga frappieri species 1 species Methylophaga nitratireducenticrescens 0 581 754476 genus Piscirickettsia 2 1 5 0 1113 1237 1 species Piscirickettsia salmonis 1108 0 1238 1 4 Cycloclasticus genus 1046 0 34067 23 no rank 2 0 711 2621467 0 728003 373 species Cycloclasticus sp. PY97N 1 species Cycloclasticus sp. P1 1 0 338 385025 0 1329899 312 1 species Cycloclasticus zancles genus Thiomicrospira 1 3 4 0 952 933 1 Thiomicrospira cyclica species 0 147268 315 1 Thiomicrospira aerophila species 92245 0 633 2 1 Hydrogenovibrio genus 0 28884 544 25 0 39765 519 Hydrogenovibrio crunogenus species 1 38 0 1934945 1495 Immundisolibacterales order 1 4 66 0 1934946 1457 family Immundisolibacteraceae 3 1 1 2 genus Immundisolibacter 0 1391 1934947 15 1 Immundisolibacter cernigliae species 0 1376 1810504 405 135619 0 38416 order Oceanospirillales 68 1 family Alcanivoracaceae 9 1 47 0 224372 5570 82 0 59753 4417 Alcanivorax genus 1 6 Alcanivorax pacificus species 1 1306787 0 1349 285091 0 1190 1 Alcanivorax dieselolei species 0 2638842 376 no rank 1 376 0 1113728 Alcanivorax sp. NBRC 101098 species 1 Alcanivorax xenomutans species 1 1060 0 1094342 59754 0 360 1 Alcanivorax borkumensis species Ketobacter genus 2 1 23 0 2025617 1106 1917421 0 1083 1 species Ketobacter alkanivorans family Oceanospirillaceae 12 1 101 0 135620 4659 1 474 0 188907 Oleispira genus 1 2 1 Oleispira antarctica species 0 188908 473 0 1315 48075 8 2 1 Marinobacterium genus 0 1821621 1307 Marinobacterium aestuarii species 1 12 28253 0 1651 Marinomonas genus 4 1 1 species Marinomonas posidonica 0 936476 407 0 119864 452 Marinomonas mediterranea species 1 no rank 1 0 196814 780 species Marinomonas sp. MWYL1 1 0 780 400668 0 1537406 528 1 2 1 genus Bacterioplanes 1 Bacterioplanes sanyensis species 527 0 1249553 1 genus 0 590 187492 0 590 187493 1 Thalassolituus oleivorans species 0 984 224379 8 3 1 family Hahellaceae 0 976 158481 4 2 1 genus Hahella 158327 0 972 species Hahella chejuensis 1 2 0 1920240 1507 family Kangiellaceae 1 6 genus Kangiella 5 1 57 0 1505 261963 Kangiella geojedonensis species 1 0 914150 253 0 387 261964 1 species Kangiella koreensis 0 497 1144748 1 Kangiella sediminilitoris species 0 1561924 311 Kangiella profundi species 1 5 1 family Saccharospirillaceae 0 1668 255527 1 0 681 230494 7 2 1 genus Reinekea 1 Reinekea forsetii species 0 674 1336806 3 0 1445504 986 Gynuella genus 2 1 1 Gynuella sunshinyii species 983 0 1445505 0 28256 23092 348 1 30 family Halomonadaceae 0 114403 1242 3 no rank 1 genus 0 114185 41 Candidatus Carsonella ruddii species 1 41 0 114186 0 235572 129 genus 1 0 91844 129 Candidatus Portiera aleyrodidarum species 1 0 1072 1495768 genus 1 0 1495769 1072 1 species Candidatus Evansia muelleri 0 13497 2745 312 1 15 Halomonas genus Halomonas beimenensis species 1 1978 0 475662 species Halomonas chromatireducens 1 1108 0 507626 1 Halomonas campaniensis species 0 213554 509 0 115561 1200 species Halomonas hydrothermalis 1 1 Halomonas huangheensis species 0 822 1178482 0 2609666 6118 no rank 8 0 1962264 546 1 Halomonas sp. 'Soap Lake #7' species species Halomonas sp. 1513 1 0 1883416 1465 0 428 1971364 1 Halomonas sp. GT species 1 Halomonas sp. GFAJ-1 species 287 0 1118153 660 0 1610576 Halomonas sp. R57-5 species 1 0 546 1949203 1 Halomonas sp. 'Soap Lake #6' species 1 Halomonas sp. KO116 species 0 525 1504981 Halomonas sp. SF2003 species 1 1661 0 2136172 0 1897729 1450 species Halomonas aestuarii 1 Halotalea genus 1 2 30 0 1279 376488 Halotalea alkalilenta species 1 0 1249 376489 3 1 genus Kushneria 0 504090 2872 43 698828 0 1280 1 species Kushneria konosiri 0 157779 1549 1 species Kushneria marisflavi 0 204286 1578 11 2 1 genus Cobetia 1 Cobetia marina species 28258 0 1567 Chromohalobacter genus 1 2 7 42054 0 993 0 158080 986 Chromohalobacter salexigens species 1 18 0 404432 1283 Salinicola genus 1 2 0 1771309 1265 Salinicola tamaricis species 1 family 2 531 0 191033 23 0 141450 531 Oleiphilus genus 1 2 0 508 141451 Oleiphilus messinensis species 1 0 135622 54986 194 1 104 Alteromonadales order family Alteromonadaceae 1 29 70 0 72275 18417 0 1621534 568 genus 1 0 568 326544 1 Paraglaciecola psychrophila species Agarivorans genus 2 1 7 0 573 261825 1 Agarivorans gilvus species 566 0 680279 genus Alteromonas 1 10 110 5904 0 226 0 314275 960 1 Alteromonas mediterranea species 0 2614992 1247 no rank 3 1 species Alteromonas sp. MB-3u-76 0 395 2058133 375 0 1917158 1 Alteromonas sp. RW2A1 species species Alteromonas sp. Mac1 1 0 477 1777491 1 Alteromonas macleodii species 28108 0 1515 species Alteromonas naphthalenivorans 1 0 715451 319 414 0 589873 Alteromonas australica species 1 1 Alteromonas stellipolaris species 0 777 233316 1 Alteromonas addita species 0 287094 562 54 0 8739 2742 genus Marinobacter 1 10 0 1545 2743 species Marinobacter hydrocarbonoclasticus 1 1 Marinobacter salinus species 0 696 1874317 0 764 1420916 Marinobacter similis species 1 0 1420917 1164 1 Marinobacter salarius species 1 species Marinobacter psychrophilus 330734 0 668 0 83889 2681 no rank 3 Marinobacter sp. CP1 species 1 0 1671721 1049 0 1749259 995 1 Marinobacter sp. LQ44 species 637 0 490759 species Marinobacter sp. BSs20148 1 1167 0 1033846 1 species Marinobacter adhaerens 5 1531 0 89404 Glaciecola genus 3 1 1 Glaciecola nitratireducens species 0 783 300231 no rank 1 0 743 2618684 1 species Glaciecola sp. 4H-3-7+YE-5 983545 0 743 genus Lacimicrobium 2 1 15 1751872 0 1032 1 species Lacimicrobium alkaliphilum 0 1017 1526571 0 1356 267892 8 1 3 Ferrimonadaceae family 1348 0 44011 46 2 1 genus Ferrimonas 44012 0 1302 species Ferrimonas balearica 1 99 0 13307 267890 family Shewanellaceae 25 1 24 1 Shewanella genus 13208 0 22 162 0 359303 1003 Shewanella loihica species 1 0 649 271097 1 species Shewanella sediminis 0 60961 688 1 species Shewanella woodyi 0 260364 417 1 Shewanella marisflavi species no rank 6 0 196818 2303 Shewanella sp. ANA-3 species 1 0 94122 476 1 species Shewanella sp. W3-18-1 0 351745 382 1 species Shewanella sp. MR-7 60481 0 391 species Shewanella sp. Pdp11 1 0 434 2059264 0 272 60480 Shewanella sp. MR-4 species 1 1 species Shewanella sp. WE21 348 0 2029986 Shewanella japonica species 1 93973 0 628 0 24 390 1 species Shewanella putrefaciens 1 Shewanella psychrophila species 0 687 225848 0 468 70864 1 species Shewanella pealeana Shewanella bicestrii species 1 308 0 2018305 62322 0 1297 1 Shewanella baltica species 1 species Shewanella frigidimarina 0 683 56812 0 598 60217 Shewanella violacea species 1 0 271098 459 Shewanella halifaxensis species 1 1 Shewanella amazonensis species 0 60478 926 600 0 404011 1 species Shewanella piezotolerans species Shewanella oneidensis 1 70863 0 570 1 Shewanella denitrificans species 0 372 192073 10 0 1498 267893 family Idiomarinaceae 1 6 135575 0 1488 14 5 1 Idiomarina genus 2 no rank 0 846 2614829 0 2055892 325 1 Idiomarina sp. X4 species species Idiomarina sp. OT37-5b 1 2100422 0 521 0 135577 335 1 species Idiomarina loihiensis 0 293 1096243 1 Idiomarina piscisalsi species 3 1 family Psychromonadaceae 0 267894 1597 22 2 genus 0 67572 1575 0 502 2614957 1 no rank 0 314282 502 species Psychromonas sp. CNPT3 1 0 1073 357794 species Psychromonas ingrahamii 1 Colwelliaceae family 1 9 14 0 3713 267889 genus Thalassotalea 2 1 12 0 1518149 631 1 species Thalassotalea crassostreae 0 1763536 619 1 6 genus Colwellia 0 28228 3068 8 0 1967665 639 1 Colwellia beringensis species no rank 3 1575 0 196834 0 595 58049 1 species Colwellia sp. MT41 0 595 1816219 Colwellia sp. PAMC 21821 species 1 1 species Colwellia sp. PAMC 20917 0 1816218 385 Colwellia psychrerythraea species 1 28229 0 846 14344 0 267888 25 25 1 Pseudoalteromonadaceae family 24 1 genus Pseudoalteromonas 14319 0 53246 154 1 Pseudoalteromonas issachenkonii species 0 761 152297 1 species Pseudoalteromonas tetraodonis 43659 0 694 0 247523 381 1 species Pseudoalteromonas aliena Pseudoalteromonas spongiae species 1 0 298657 595 0 422 161398 species Pseudoalteromonas phenolica 1 0 568 43658 1 Pseudoalteromonas rubra species 43657 0 598 Pseudoalteromonas luteoviolacea species 1 0 408 267375 Pseudoalteromonas marina species 1 331 0 228 1 Pseudoalteromonas haloplanktis species 1 species Pseudoalteromonas translucida 0 166935 433 species Pseudoalteromonas piratica 1 0 1348114 669 Pseudoalteromonas arctica species 1 0 600 394751 species Pseudoalteromonas espejiana 1 28107 0 836 1 species Pseudoalteromonas agarivorans 0 176102 524 0 194690 3269 5 no rank 1 Pseudoalteromonas sp. NC201 species 573 0 1514074 0 654 283699 species Pseudoalteromonas sp. Bsw20308 1 Pseudoalteromonas sp. 13-15 species 1 1761891 0 633 1 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 1720343 0 655 234831 0 754 1 species Pseudoalteromonas sp. SM9913 Pseudoalteromonas nigrifaciens species 1 433 0 28109 0 43662 661 species Pseudoalteromonas piscicida 1 species Pseudoalteromonas tunicata 1 0 911 314281 1 species Pseudoalteromonas atlantica 1071 0 288 3 1 Moritellaceae family 0 267891 560 2 0 58050 558 5 1 2 genus Moritella 0 553 80854 1 species Moritella viscosa 91347 0 269175 1289 247 1 Enterobacterales order 0 1116 451511 no rank 2 genus Plesiomonas 1 2 36 702 0 1116 0 1080 703 species Plesiomonas shigelloides 1 0 10798 1903412 42 1 14 Hafniaceae family genus Obesumbacterium 1 2 19 0 82982 652 0 633 82983 Obesumbacterium proteus species 1 627 0 8179 635 Edwardsiella genus 8 1 Edwardsiella tarda species 1 0 1937 636 1 Edwardsiella hoshinae species 0 93378 841 no rank 2 0 2676541 2039 0 1140 1578828 Edwardsiella sp. EA181011 species 1 species Edwardsiella sp. LADL05-105 1 0 899 1650654 species Edwardsiella ictaluri 1 0 920 67780 0 898 1821960 Edwardsiella anguillarum species 1 Edwardsiella piscicida species 1 0 917 1263550 genus Hafnia 3 1 28 1925 0 568 1 Hafnia alvei species 0 569 1408 no rank 1 2621980 0 489 1 species Hafnia sp. CBA7124 0 489 1848580 family Erwiniaceae 1 28 103 0 28642 1903409 Tatumella genus 2 1 41 0 82986 747 0 706 53336 Tatumella citrea species 1 2 genus 2100764 0 3073 0 665914 1365 Pantoea gaviniae species 1 Pantoea calida species 1 665913 0 1708 10 0 5489 32199 genus Buchnera 1 2 0 5479 9 Buchnera aphidicola species 1 1 11 Pantoea genus 0 53335 11982 585 Pantoea alhagi species 1 0 1891675 875 species group 1 0 1654067 1913 0 549 1913 Pantoea agglomerans species 1 3 no rank 3556 0 2630326 species Pantoea sp. PSNIH2 1 0 1596 1484157 0 1484158 986 1 species Pantoea sp. PSNIH1 Pantoea sp. At-9b species 1 0 974 592316 519 0 1235990 Candidatus Pantoea carbekii species 1 0 738 1076550 species Pantoea rwandensis 1 870 0 66269 Pantoea stewartii species 1 Pantoea vagans species 1 0 1786 470934 Pantoea ananatis species 1 0 1140 553 Wigglesworthia genus 1 2 3 1244 0 51228 Wigglesworthia glossinidia species 1 0 1241 51229 0 551 6004 176 8 1 Erwinia genus 1132 0 182337 1 species Erwinia billingiae 1 Erwinia amylovora species 0 568 552 980 0 2622719 no rank 1 0 215689 980 1 species Erwinia sp. Ejp617 238 0 1922217 species Candidatus Erwinia sp. ErCipseudotaxifoliae 1 Erwinia gerundensis species 1 1619313 0 1244 0 79967 838 species Erwinia pyrifoliae 1 1 species Erwinia tasmaniensis 0 828 338565 148 0 45731 1903411 family Yersiniaceae 1 39 genus Rahnella 4 1 85 34037 0 2913 2635087 0 1945 2 no rank 0 1083 1805933 1 species Rouxiella sp. ERMR1:05 0 862 741091 1 Rahnella sp. Y9602 species 1 Rahnella aquatilis species 883 0 34038 Rouxiella genus 1 0 1565532 24 13 1 Yersinia genus 0 10486 629 214 1 species Yersinia intermedia 631 0 587 Yersinia ruckeri species 1 0 29486 607 Yersinia enterocolitica species 1 0 2148 630 species group 3 0 1649845 2372 species Yersinia pseudotuberculosis 1 0 633 1122 species Yersinia similis 1 0 367190 531 1 Yersinia pestis species 719 0 632 1 species Yersinia kristensenii 0 28152 602 1 species Yersinia frederiksenii 0 1789 29484 1 no rank 0 466 2653513 0 466 1839800 species Yersinia sp. FDAARGOS_228 1 species Yersinia rohdei 1 29485 0 760 1 species Yersinia aldovae 0 29483 448 0 263819 493 species Yersinia aleksiciae 1 Chania genus 1 2 5 0 1745211 1347 1639108 0 1342 1 species Chania multitudinisentens genus Serratia 1 16 1189 0 613 29572 species Serratia rubidaea 1 0 1557 61652 1 species Serratia plymuthica 0 82996 2452 Serratia liquefaciens species 1 1535 0 614 8 no rank 0 2647522 10204 2033438 0 1330 Serratia sp. MYb239 species 1 1 Serratia sp. SSNIH1 species 0 1758196 1319 0 1327989 1447 Serratia sp. FS14 species 1 1 Serratia sp. FGI94 species 0 1629 671990 0 1566 488142 1 species Serratia sp. SCBI 0 104623 1123 species Serratia sp. ATCC 39006 1 Serratia sp. AS13 species 1 0 768493 895 0 768490 895 species Serratia sp. AS12 1 1 Serratia ficaria species 0 61651 1737 1 Serratia fonticola species 2400 0 47917 1 species Serratia marcescens 0 7239 615 1259 0 28151 1 Serratia proteamaculans species 0 1241 929812 1 1 2 genus Gibbsiella 1 species Gibbsiella quercinecans 0 1240 929813 1361 0 543 144041 family Enterobacteriaceae 119 1 1 genus 0 780 579 species Kluyvera intermedia 1 0 61648 780 26 0 1330546 4067 Pluralibacter genus 1 3 0 1334193 1464 [Enterobacter] lignolyticus species 1 1 Pluralibacter gergoviae species 0 61647 2577 158 0 3437 83654 Leclercia genus 4 1 0 83655 947 species Leclercia adecarboxylata 1 2 no rank 0 2627398 2332 0 1920114 1348 Leclercia sp. LSNIH1 species 1 984 0 1920116 Leclercia sp. LSNIH3 species 1 1 4 Lelliottia genus 1330545 0 3063 24 1 Lelliottia jeotgali species 0 843 1907578 1 species Lelliottia nimipressuralis 0 911 69220 0 61646 1285 species Lelliottia amnigena 1 0 1063 1335483 1 genus Shimwellia blattae species 1 0 1063 563 genus Shigella 4 1 190 0 2644 620 1 species Shigella flexneri 669 0 623 0 828 2629414 no rank 1 828 0 1813821 1 Shigella sp. PAMC 28760 species species Shigella dysenteriae 1 0 957 622 894 26720 0 570 genus Klebsiella 1 10 1 Klebsiella quasipneumoniae species 0 1617 1463165 0 244366 3043 1 species Klebsiella variicola 0 571 4773 1 Klebsiella oxytoca species 2 no rank 2793 0 2608929 0 1400 1905288 Klebsiella sp. LTGPAF-6F species 1 Klebsiella sp. M5al species 1 0 1393 1934254 Klebsiella michiganensis species 1 0 1134687 2831 1 Klebsiella aerogenes species 0 548 2183 0 573 7127 Klebsiella pneumoniae species 1 Klebsiella quasivariicola species 1 2026240 0 1459 1 3 genus Raoultella 0 160674 3881 93 1 Raoultella ornithinolytica species 0 2692 54291 0 575 1096 Raoultella planticola species 1 4363 0 1330547 54 1 5 genus Kosakonia Kosakonia sacchari species 1 0 810 1158459 1 species Kosakonia cowanii 0 1500 208223 0 1111 283686 1 Kosakonia radicincitans species 0 497725 888 species Kosakonia oryzae 1 0 63 1048757 1 genus 0 1048758 63 1 species Candidatus Moranella endobia 0 413496 7605 184 8 1 genus Cronobacter species Cronobacter malonaticus 1 0 991 413503 Cronobacter turicensis species 1 0 960 413502 0 999 413501 species Cronobacter muytjensii 1 1 species Cronobacter sakazakii 0 1630 28141 0 985 535744 1 Cronobacter universalis species 728 0 1163710 1 species Cronobacter condimenti 1 species Cronobacter dublinensis 0 1128 413497 547 0 27662 1444 1 22 genus Enterobacter 0 19534 354276 species group 12 species Enterobacter cancerogenus 1 0 939 69218 species Enterobacter kobei 1 0 208224 776 0 4458 158836 2725 1 3 Enterobacter hormaechei species 0 1812934 947 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 1 1 Enterobacter xiangfangensis subspecies 0 1296536 786 1 species Enterobacter ludwigii 0 299767 625 0 61645 2738 1 Enterobacter asburiae species 3 no rank 2028 0 2757714 1 species Enterobacter cloacae complex sp. ECNIH7 0 733 1915310 0 2077137 546 1 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 species Enterobacter cloacae complex bacterium species 1 0 749 2027919 0 1812935 669 Enterobacter cloacae complex 'Hoffmann cluster IV' species 1 1 species Enterobacter cloacae 550 0 7301 no rank 9 0 2608935 6684 1 species Enterobacter sp. 638 0 804 399742 1 Enterobacter sp. E20 species 1560339 0 390 855 0 1692238 1 Enterobacter sp. FY-07 species 1 species Enterobacter sp. HK169 0 1868135 419 0 871 1827481 Enterobacter sp. ODB01 species 1 1 Enterobacter sp. R4-368 species 918 0 1166130 Enterobacter sp. CRENT-193 species 1 0 891 2051905 0 1085 1914861 species Enterobacter sp. SA187 1 Enterobacter sp. Crenshaw species 1 0 1977566 451 Cedecea genus 2 1 10 0 3378 158483 1 Cedecea neteri species 0 3368 158822 0 16413 544 434 1 14 genus Citrobacter 7 species group 0 9082 1344959 species Citrobacter braakii 1 0 57706 1384 1 species Citrobacter freundii 0 546 3358 1 Citrobacter freundii complex sp. CFNIH4 species 0 2077148 744 species Citrobacter freundii complex sp. CFNIH9 1 2077149 0 538 0 1074 2066049 1 Citrobacter freundii complex sp. CFNIH2 species 0 1304 67827 1 Citrobacter werkmanii species Citrobacter freundii complex sp. CFNIH3 species 1 0 680 2077147 species Citrobacter amalonaticus 1 35703 0 2278 0 1075 545 species Citrobacter koseri 1 0 1475 2644389 no rank 2 760 0 1702170 1 Citrobacter sp. FDAARGOS_156 species 0 1920110 715 1 Citrobacter sp. CFNIH10 species 0 1103 67825 species Citrobacter rodentium 1 0 966 67824 species Citrobacter farmeri 1 0 409304 906 2 1 2 genus Candidatus Ishikawaella 904 0 168169 1 species Candidatus Ishikawaella capsulata 259 0 561 17545 Escherichia genus 1 5 0 208962 1495 species Escherichia albertii 1 0 14035 562 1 species Escherichia coli 1 species Escherichia fergusonii 564 0 1056 Escherichia marmotae species 1 0 1499973 700 0 36866 5654 5 no rank 0 1024 891974 Plautia stali symbiont species 1 0 1064 693444 1 Enterobacteriaceae bacterium strain FGI 57 species 1 species Enterobacteriaceae bacterium ENNIH3 1132 0 1920128 1 species Enterobacteriaceae bacterium ENNIH1 1463 0 2066051 1 species Enterobacteriaceae bacterium ENNIH2 0 1920109 971 590 0 8419 22 3 1 genus Salmonella 0 1022 54736 1 Salmonella bongori species 0 7375 28901 1 Salmonella enterica species genus 1 705 0 401618 Candidatus Riesia pediculicola species 1 401619 0 705 0 4312 191675 20 no rank 20 clade 84563 0 4312 1 clade 0 270 199891 0 1835721 270 secondary endosymbiont of Trabutina mannipara species 1 0 1906660 237 genus 1 Candidatus Mikella endobia species 1 0 1778264 237 0 1678 84564 7 clade Candidatus Blochmannia genus 1 7 2 0 1678 203804 2 no rank 0 711328 627 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus species 1 0 201 1505597 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 1 0 1505596 426 1 Candidatus Blochmannia vafer species 180 0 251535 0 204 101534 1 Candidatus Blochmannia pennsylvanicus species 345 0 251542 1 Candidatus Blochmannia chromaiodes species species Candidatus Blochmannia floridanus 1 203907 0 320 genus 1 303 0 1906661 Candidatus Gullanella endobia species 1 0 303 1070130 clade 4 0 146507 912 secondary endosymbiont of Heteropsylla cubana species 1 0 360 134287 genus Candidatus Hamiltonella 1 2 4 0 343 568987 species Candidatus Hamiltonella defensa 1 0 138072 339 0 1199245 209 1 secondary endosymbiont of Ctenarytaina eucalypti species genus Candidatus Doolittlea 2 1 13 0 1906657 269 0 256 1778262 1 species Candidatus Doolittlea endobia 2 0 130 1906659 Candidatus Hoaglandella genus 1 2 0 128 1778263 species Candidatus Hoaglandella endobia 1 Candidatus Tachikawaea genus 2 1 1 513 0 1682492 0 1410383 512 1 species Candidatus Tachikawaea gelatinosa 0 1903414 13639 37 1 21 Morganellaceae family 4 1 genus Photorhabdus 0 29487 1994 25 0 593 29488 Photorhabdus luminescens species 1 0 574560 481 Photorhabdus temperata species 1 0 291112 895 Photorhabdus asymbiotica species 1 586 0 3311 7 4 1 genus Providencia 126385 0 562 1 Providencia alcalifaciens species 588 0 2140 species Providencia stuartii 1 1 Providencia rettgeri species 0 587 602 0 1160 637 genus 1 0 634113 1160 Arsenophonus symbiont of Lipoptena fortisetosa species 1 1 6 genus Xenorhabdus 0 3111 626 23 Xenorhabdus doucetiae species 1 0 534 351671 865 0 628 1 species Xenorhabdus nematophila 0 40577 403 1 Xenorhabdus poinarii species 0 40576 906 1 species Xenorhabdus bovienii species Xenorhabdus hominickii 1 0 351679 380 0 2083 581 92 2 1 Morganella genus species Morganella morganii 1 582 0 1991 3 1 genus Proteus 0 583 1943 3 Proteus vulgaris species 1 0 585 567 1 Proteus mirabilis species 0 1373 584 family Budviciaceae 1 3 2 0 793 1903416 Pragia genus 1 2 1 0 82984 791 0 82985 790 species Pragia fontium 1 83 0 23126 1903410 family Pectobacteriaceae 1 20 1 5 genus Sodalis 0 84565 2701 69 0 63612 883 1 species Sodalis glossinidius 0 1239307 922 Sodalis praecaptivus species 1 species Candidatus Sodalis pierantonius 1 680 0 1486991 0 1929246 147 Sodalis endosymbiont of Henestaris halophilus species 1 1 6 genus Dickeya 0 9876 204037 295 1 species Dickeya zeae 204042 0 3128 Dickeya dianthicola species 1 0 1215 204039 species Dickeya solani 1 0 2469 1089444 1 Dickeya dadantii species 0 1164 204038 Dickeya fangzhongdai species 1 0 1605 1778540 0 122277 9399 326 1 6 genus Pectobacterium 1 species Pectobacterium atrosepticum 29471 0 905 0 4802 554 Pectobacterium carotovorum species 1 1 species Pectobacterium polaris 0 2042057 1732 55208 0 853 1 species Pectobacterium wasabiae 1 Pectobacterium parmentieri species 781 0 1905730 0 71655 1067 21 2 1 Brenneria genus 1 Brenneria goodwinii species 0 1109412 1046 0 1879 1240482 4 order 1240483 0 1879 129 4 1 family Orbaceae 1 genus 576 0 1335631 Frischella perrara species 1 0 576 1267021 1 0 1193503 1174 Gilliamella genus 1 2 0 1196095 1173 Gilliamella apicola species 1 990 72274 0 174941 order Pseudomonadales 129 1 79 0 27686 468 Moraxellaceae family 42 1 0 469 21495 171 1 25 genus Acinetobacter 631 0 1148157 1 Acinetobacter oleivorans species 878 0 108981 1 Acinetobacter schindleri species Acinetobacter junii species 1 0 40215 629 1 species 0 202950 757 62977 0 757 Acinetobacter sp. ADP1 strain 1 0 40216 616 1 Acinetobacter radioresistens species 0 196816 4466 7 no rank Acinetobacter sp. ACNIH1 species 1 0 567 1636603 813 0 1407071 1 species Acinetobacter sp. TGL-Y2 0 575 1608473 species Acinetobacter sp. NCu2D-2 1 0 598 2079596 1 Acinetobacter sp. SWBY1 species Acinetobacter sp. TTH0-4 species 1 0 1646498 518 1 Acinetobacter sp. ACNIH2 species 0 1758189 493 0 902 1808001 1 Acinetobacter sp. LoGeW2-3 species 0 909768 8505 species group 5 3408 0 470 1 species Acinetobacter baumannii 1 species Acinetobacter nosocomialis 0 1042 106654 1 Acinetobacter pittii species 0 48296 2096 0 1500 471 1 species Acinetobacter calcoaceticus 1 species Acinetobacter lactucae 0 459 1785128 756892 0 497 species Acinetobacter indicus 1 1097 0 29430 Acinetobacter haemolyticus species 1 487316 0 474 Acinetobacter soli species 1 species Acinetobacter bereziniae 1 636 0 106648 species Acinetobacter johnsonii 1 40214 0 792 0 657 1789224 species Acinetobacter larvae 1 1 species Acinetobacter equi 0 1324350 689 22 0 475 2402 Moraxella genus 5 1 species Moraxella catarrhalis 1 480 0 391 Moraxella bovoculi species 1 0 386891 617 1 Moraxella osloensis species 0 34062 1102 Moraxella ovis species 1 0 29433 270 genus Psychrobacter 11 1 60 0 497 3710 1 species Psychrobacter cryohalolentis 0 330922 808 6 no rank 1933 0 196806 0 1028416 271 species Psychrobacter sp. DAB_AL43B 1 1 Psychrobacter sp. P11G5 species 0 291 1699624 1 Psychrobacter sp. G species 0 573 571800 1 species Psychrobacter sp. P2G3 242 0 1699622 1 Psychrobacter sp. AntiMn-1 species 356 0 1720344 species Psychrobacter sp. PRwf-1 1 0 200 349106 45610 0 269 1 Psychrobacter urativorans species 0 334543 355 1 species Psychrobacter arcticus 0 285 261164 Psychrobacter alimentarius species 1 86 1 Pseudomonadaceae family 0 135621 146265 1035 3 0 1849530 417 genus Oblitimonas 1 2 0 1697053 414 1 Oblitimonas alkaliphila species genus Pseudomonas 1 80 5230 286 0 140157 Pseudomonas silesiensis species 1 1853130 0 907 0 65741 1638 species Pseudomonas knackmussii 1 species group 6 0 20237 136845 species Pseudomonas putida 1 303 0 11317 Pseudomonas oryzihabitans species 1 0 1367 47885 1 species Pseudomonas monteilii 0 76759 2961 species Pseudomonas mosselii 1 0 78327 1831 1 species Pseudomonas fulva 1820 0 47880 Pseudomonas plecoglossicida species 1 0 70775 941 136849 0 12997 species group 8 species Pseudomonas cichorii 1 0 667 36746 251701 0 1447 species Pseudomonas syringae group genomosp. 3 1 1 Pseudomonas viridiflava species 33069 0 1061 0 5882 251695 species subgroup 1 0 5882 317 Pseudomonas syringae species 1 2775504 0 669 no rank 1 1 Pseudomonas sp. Lz4W species 0 1206777 669 2 species subgroup 2538 0 251698 Pseudomonas amygdali species 1 0 47877 1363 0 29438 1175 1 species Pseudomonas savastanoi 46257 0 733 species Pseudomonas avellanae 1 216142 0 1010 Pseudomonas rhizosphaerae species 1 species group 6 18412 0 136841 5923 0 287 1 species Pseudomonas aeruginosa 1 Pseudomonas mendocina species 0 300 4917 1 species Pseudomonas alcaligenes 0 1368 43263 0 1232139 1688 species subgroup 1 species Pseudomonas furukawaii 1 0 1688 1149133 1 species Pseudomonas citronellolis 0 3128 53408 1 Pseudomonas resinovorans species 1388 0 53412 species Pseudomonas parafulva 1 1529 0 157782 0 1309 198620 species Pseudomonas koreensis 1 1 species Pseudomonas alkylphenolica 0 237609 948 1 Pseudomonas cremoricolorata species 0 157783 829 0 237610 1491 1 Pseudomonas psychrotolerans species 0 219572 961 1 Pseudomonas antarctica species 0 833 312306 1 species Pseudomonas entomophila 0 1788301 857 Pseudomonas versuta species 1 0 18151 136843 9 species group Pseudomonas trivialis species 1 860 0 200450 Pseudomonas mandelii species 1 75612 0 1076 0 1644 47878 Pseudomonas azotoformans species 1 0 47879 850 species Pseudomonas corrugata 1 Pseudomonas protegens species 1 1380 0 380021 species Pseudomonas poae 1 0 200451 760 0 294 9800 1 species Pseudomonas fluorescens 0 76761 1044 1 species Pseudomonas veronii species Pseudomonas orientalis 1 0 76758 737 species Pseudomonas alcaliphila 1 101564 0 1307 1 species Pseudomonas brassicacearum 930166 0 2027 Pseudomonas frederiksbergensis species 1 0 104087 2254 0 29603 196821 no rank 30 Pseudomonas sp. VLB120 species 1 69328 0 960 844 0 1636610 1 Pseudomonas sp. PONIH3 species 0 1500687 1219 1 Pseudomonas sp. St29 species 1283291 0 1666 Pseudomonas sp. URMO17WK12:I11 species 1 1 Pseudomonas sp. DR 5-09 species 0 711 1534110 species Pseudomonas sp. XWY-1 1 0 2069256 883 species Pseudomonas sp. LH1G9 1 0 1015 2083055 1 species Pseudomonas sp. MRSN12121 0 1133 1611770 0 832 2083051 Pseudomonas sp. SWI6 species 1 0 1398 1028989 species Pseudomonas sp. StFLB209 1 1338689 0 906 Pseudomonas sp. JY-Q species 1 1 Pseudomonas sp. FDAARGOS_380 species 640 0 2018067 0 1659194 713 1 Pseudomonas sp. GR 6-02 species 1 species Pseudomonas sp. SWI44 2083053 0 815 1841 0 1294143 species Pseudomonas sp. ATCC 13867 1 788 0 1415630 1 species Pseudomonas sp. TKP 0 1161 1500686 species Pseudomonas sp. Os17 1 1 species Pseudomonas sp. NC02 0 870 2067572 1131 0 1898684 1 species Pseudomonas sp. LPH1 Pseudomonas sp. FGI182 species 1 0 1130 1259844 species Pseudomonas sp. SWI36 1 2083052 0 1183 1856685 0 1425 species Pseudomonas sp. TCU-HL1 1 Pseudomonas sp. LG1D9 species 1 0 744 2083054 1649877 0 896 1 species Pseudomonas sp. CCOS 191 1 species Pseudomonas sp. CC6-YY-74 0 895 1930532 1 Pseudomonas sp. M30-35 species 0 561 1981174 Pseudomonas sp. S-6-2 species 1 0 1083 1931241 species Pseudomonas sp. HLS-6 1 2049589 0 703 647 0 1827300 species Pseudomonas sp. MYb193 1 species Pseudomonas sp. UW4 1 0 1207075 810 0 890 244566 Pseudomonas lurida species 1 0 136842 6710 species group 2 1 Pseudomonas chlororaphis species 587753 0 5198 Pseudomonas fragi species 1 0 1512 296 1 species Pseudomonas cerasi 0 1583341 834 0 9193 136846 species group 2 species Pseudomonas balearica 1 1407 0 74829 0 7786 578833 1 species subgroup 0 7786 316 species Pseudomonas stutzeri 1 0 351 4656 3 subfamily 3 1 genus Azotobacter 0 352 4656 25 0 1807 354 1 species Azotobacter vinelandii 0 353 2824 1 Azotobacter chroococcum species 6 0 1775403 1076 Nevskiales order 4 1 0 568386 11 family Sinobacteraceae 1 0 2689614 1059 family 2 1059 0 469322 5 2 1 genus Steroidobacter 0 465721 1054 1 Steroidobacter denitrificans species 0 135615 363 37 1 2 order Cardiobacteriales 868 0 326 family 1 0 326 869 genus 1 1 species Dichelobacter nodosus 326 0 870 0 37978 135624 171 1 28 order Aeromonadales 1 27 family Aeromonadaceae 37807 0 84642 339 1 2 Zobellella genus 0 2245 347533 26 species Zobellella denitrificans 1 0 347534 2219 0 1737 129577 2 2 1 Oceanimonas genus no rank 1 0 1735 2636315 1735 0 511062 Oceanimonas sp. GK1 species 1 1 2 Tolumonas genus 0 1064 43947 8 43948 0 1056 species Tolumonas auensis 1 0 225143 801 genus 2 1 Oceanisphaera profunda species 0 604 1416627 0 1903694 197 1 Oceanisphaera sp. AMac2203 species 18 1 genus Aeromonas 31621 0 642 2164 1 Aeromonas rivipollensis species 0 948519 1676 0 3204 654 1 species Aeromonas veronii species Aeromonas media 1 0 1265 651 Aeromonas dhakensis species 1 0 196024 1442 Aeromonas aquatica species 1 1220 0 558964 1 Aeromonas schubertii species 1489 0 652 0 648 955 1 species Aeromonas caviae 7010 0 644 Aeromonas hydrophila species 1 8 no rank 0 257493 8764 1636607 0 1036 Aeromonas sp. ASNIH2 species 1 0 1321 2033032 species Aeromonas sp. CA23 1 1636606 0 973 1 species Aeromonas sp. ASNIH1 1155 0 2033033 1 Aeromonas sp. CU5 species Aeromonas sp. ASNIH3 species 1 0 1636608 851 Aeromonas sp. ASNIH4 species 1 0 1224 1636609 species Aeromonas sp. ASNIH7 1 0 1920107 1047 1 species Aeromonas sp. ASNIH5 0 1758179 1157 Aeromonas salmonicida species 1 0 2432 645 12 1 Methylococcales order 0 135618 6506 59 11 1 Methylococcaceae family 0 403 6447 62 0 39773 912 genus 1 Methylomicrobium alcaliphilum species 1 271065 0 912 95 0 3827 416 genus Methylomonas 1 5 Methylomonas denitrificans species 1 1538553 0 818 no rank 1 0 2608980 1025 1 Methylomonas sp. DH-1 species 0 1025 1727196 1 Methylomonas methanica species 0 967 421 1 Methylomonas koyamae species 0 702114 922 1068 0 413 5 1 2 Methylococcus genus 0 414 1063 species Methylococcus capsulatus 1 2 1 genus Methylovulum 0 762296 578 7 species Methylovulum psychrotolerans 1 0 571 1704499 2 no rank 0 2023 33811 gamma proteobacterium HdN1 species 1 0 726 83406 1 species endosymbiont of unidentified scaly snail isolate Monju 0 1297 1248727 0 2513 1692040 54 6 1 order Acidiferrobacterales family Acidiferrobacteraceae 1 5 47 0 2459 1692041 0 1210 1744881 30 2 1 genus Sulfuricaulis 1180 0 1620215 Sulfuricaulis limicola species 1 28 0 1202 1692042 genus Sulfurifustis 2 1 1 Sulfurifustis variabilis species 0 1174 1675686 44 1 order Vibrionales 0 33585 135623 16 1 43 Vibrionaceae family 33569 0 641 204 0 521 246861 13 1 2 genus Grimontia 0 508 673 1 species Grimontia hollisae 13 0 1740 511678 Aliivibrio genus 1 4 0 466 80852 1 species Aliivibrio wodanis 887 0 668 Aliivibrio fischeri species 1 Aliivibrio salmonicida species 1 0 374 40269 1321 0 2042066 8 2 1 genus Paraphotobacterium 0 1755811 1313 1 Paraphotobacterium marinum species 6 0 2963 657 genus Photobacterium 1 4 1 Photobacterium gaetbulicola species 0 1295392 811 38293 0 1294 Photobacterium damselae species 1 1 species Photobacterium profundum 0 852 74109 Vibrio genus 1 30 286 0 662 26820 0 29494 744 Vibrio furnissii species 1 1534743 0 356 1 Vibrio hyugaensis species species group 1 0 545 1891919 0 545 29498 1 Vibrio tubiashii species 0 1435069 686 species Vibrio tritonius 1 1 Vibrio scophthalmi species 0 45658 442 species Vibrio vulnificus 1 0 672 1903 1 species Vibrio anguillarum 0 55601 785 Vibrio nigripulchritudo species 1 0 28173 808 1 Vibrio mimicus species 674 0 1189 0 717610 10116 10 species group 0 2315253 1350 species subgroup 2 1 species Vibrio antiquarius 0 150340 438 0 912 50719 species Vibrio diabolicus 1 0 663 1475 1 species Vibrio alginolyticus 1 Vibrio harveyi species 669 0 830 1 species Vibrio owensii 0 779 696485 1 species Vibrio campbellii 0 1617 680 0 1908 670 Vibrio parahaemolyticus species 1 1 species Vibrio natriegens 0 691 1368 0 417 190895 species Vibrio rotiferianus 1 Vibrio jasicida species 1 0 766224 372 1 Vibrio cholerae species 0 1418 666 0 676 1063 species Vibrio fluvialis 1 0 1066 553239 1 Vibrio breoganii species 2 no rank 0 1381 2614977 709 0 2014742 Vibrio sp. 2521-89 species 1 0 672 1116375 Vibrio sp. EJY3 species 1 1 Vibrio coralliilyticus species 0 190893 1297 0 472 2025808 species Vibrio qinghaiensis 1 0 760 52443 1 Vibrio tapetis species 687 0 1126 1 Vibrio gazogenes species species Vibrio tasmaniensis 1 0 377 212663 no rank 13 0 118884 5720 2 1 genus Thiolapillus 0 1608298 771 9 0 762 1076588 1 Thiolapillus brandeum species 3 clade 0 904 32036 Calyptogena okutanii thioautotrophic gill symbiont species 1 355 0 410330 0 320 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont species 1 1 genus 0 1541743 229 Candidatus Ruthia magnifica species 1 0 386487 229 2 0 655184 1141 Candidatus Thioglobus genus 1 3 species Candidatus Thioglobus autotrophicus 1 0 1705394 537 species Candidatus Thioglobus singularis 1 0 602 1427364 Sedimenticola genus 2 1 3 0 903 349742 species Sedimenticola thiotaurini 1 0 1543721 900 1 clade 0 198346 1211 Candidatus Baumannia cicadellinicola species 1 0 186490 1211 4 790 0 1524249 Pseudohongiella genus 1 2 Pseudohongiella spirulinae species 1 0 1249552 786 77 1706369 0 11202 order Cellvibrionales 1 28 10 1422 0 1706375 Spongiibacteraceae family 1 7 genus Spongiibacter 2 1 4 0 371 630749 0 367 2631504 no rank 1 0 367 1620392 1 Spongiibacter sp. IMCC21906 species 1084558 0 669 4 1 2 Oceanicoccus genus 0 665 716816 species Oceanicoccus sagamiensis 1 15 0 372 1434050 Zhongshania genus 2 1 1 Zhongshania aliphaticivorans species 0 357 1470434 1 11 family Cellvibrionaceae 0 1706371 5351 71 genus 1 0 2036021 846 1 species Agarilytica rhodophyticola 0 1737490 846 2 1 Teredinibacter genus 0 497 2425 4 0 2426 493 1 species Teredinibacter turnerae 695 0 447467 11 1 2 Simiduia genus species Simiduia agarivorans 1 0 447471 684 4 1 Cellvibrio genus 10 0 2680 11 0 2624793 1573 2 no rank 0 831 1987723 species Cellvibrio sp. PSBB006 1 0 742 1945512 1 species Cellvibrio sp. PSBB023 1 Cellvibrio japonicus species 155077 0 1096 0 562 316625 genus 1 0 562 86304 1 species Saccharophagus degradans family Halieaceae 4 1 37 0 1607 1706372 Halioglobus genus 3 1 37 0 1570 1217416 1 species Halioglobus japonicus 0 768 930805 0 765 930806 Halioglobus pacificus species 1 18 0 1706373 2745 family Microbulbiferaceae 5 1 genus Microbulbifer 4 1 14 48073 0 2727 0 957 1769779 1 species Microbulbifer aggregans 0 260552 809 1 Microbulbifer agarilyticus species Microbulbifer thermotolerans species 1 0 252514 947 Pasteurellales order 29 1 29 135625 0 21441 528 0 712 21412 family Pasteurellaceae 28 1 15 0 1633 416916 Aggregatibacter genus 3 1 0 611 732 1 species Aggregatibacter aphrophilus 1 Aggregatibacter actinomycetemcomitans species 0 714 1007 1 6 genus Haemophilus 6272 0 724 45 1 no rank 0 2609962 575 species Haemophilus sp. oral taxon 036 1 0 712310 575 0 567 730 1 species [Haemophilus] ducreyi species Haemophilus influenzae 1 0 727 2421 1 Haemophilus parainfluenzae species 0 729 2244 0 420 249188 1 Haemophilus pittmaniae species genus 1 1156 0 476528 0 47735 1156 1 Bibersteinia trehalosi species 105 0 713 2445 Actinobacillus genus 1 5 0 556 716 species Actinobacillus suis 1 0 730 715 1 species Actinobacillus pleuropneumoniae Actinobacillus equuli species 1 0 577 718 1 species Actinobacillus succinogenes 0 67854 477 2 1 genus Gallibacterium 1797 0 155493 96 species Gallibacterium anatis 1 0 1701 750 genus 1 596 0 697331 1 [Mannheimia] succiniciproducens species 157673 0 596 75984 0 2613 11 4 1 genus Mannheimia 0 2645054 875 no rank 1 875 0 1432056 Mannheimia sp. USDA-ARS-USMARC-1261 species 1 0 762 75985 Mannheimia haemolytica species 1 0 85404 965 1 species Mannheimia varigena 0 745 2038 28 3 1 genus Pasteurella 0 1505 747 species Pasteurella multocida 1 505 0 754 1 species Pasteurella dagmatis genus 1 1011 0 214906 1 species Histophilus somni 0 731 1011 1 genus 0 2094023 1323 0 1323 738 species Glaesserella parasuis 1 class Betaproteobacteria 350 1 965 0 394160 28216 0 34791 206351 463 37 1 Neisseriales order family Chromobacteriaceae 1 13 246 0 15086 1499392 2 1 genus Pseudogulbenkiania 568394 0 2004 22 0 2642558 1982 no rank 1 species Pseudogulbenkiania sp. NH8B 1 0 1982 748280 1 2 Jeongeupia genus 0 1365 885864 31 no rank 1 0 1334 2619593 Jeongeupia sp. USM3 species 1 0 1906741 1334 18 1416 0 187 Aquaspirillum genus 2 1 0 2620219 1398 no rank 1 species Aquaspirillum sp. LM1 1 0 1938604 1398 38 1993 0 168470 Laribacter genus 1 2 0 168471 1955 1 Laribacter hongkongensis species 0 90153 8062 no rank 4 genus Chromobacterium 4 1 144 0 8062 535 0 1108595 3563 species Chromobacterium vaccinii 1 no rank 1 0 2641838 2100 species Chromobacterium sp. ATCC 53434 1 0 2059672 2100 0 2255 536 Chromobacterium violaceum species 1 1 23 Neisseriaceae family 19242 0 481 174 Vitreoscilla genus 3 1 32 0 1513 59 0 426 2627922 1 no rank species Vitreoscilla sp. C1 1 0 96942 426 0 1055 63 1 Vitreoscilla filiformis species 10 0 1094 538 genus Eikenella 2 1 Eikenella corrodens species 1 0 539 1084 Snodgrassella genus 2 1 2 1193515 0 751 0 1196083 749 Snodgrassella alvi species 1 376 0 14612 482 genus Neisseria 1 12 0 660 28091 1 species Neisseria weaveri 1234 0 488 Neisseria mucosa species 1 0 1183 490 species Neisseria sicca 1 1 species Neisseria zoodegmatis 0 326523 850 0 2623750 2344 no rank 2 0 579 1853276 species Neisseria sp. 10022 1 655307 0 1765 species Neisseria sp. KEM232 1 0 1016 485 1 species Neisseria gonorrhoeae 1 Neisseria meningitidis species 0 487 3131 1 Neisseria elongata species 880 0 495 species Neisseria lactamica 1 486 0 1735 species Neisseria sp. 10023 1 0 1853278 1203 1 no rank 0 421605 538 1 species Neisseriaceae bacterium DSM 100970 0 2052837 538 genus Simonsiella 2 1 1 71 0 560 1 Simonsiella muelleri species 0 72 559 no rank 11 0 4442 119066 1 genus 55 0 1301080 1160784 0 55 Candidatus Nasuia deltocephalinicola species 1 1 genus 1381133 0 766 Candidatus Profftella armatura species 1 0 669502 766 0 2374 33055 8 1 6 Kinetoplastibacterium genus 472 0 994692 Candidatus Kinetoplastibacterium desouzaii species 1 1 Candidatus Kinetoplastibacterium oncopeltii species 994696 0 195 Kinetoplastibacterium blastocrithidii species 1 0 233181 240 1 species Candidatus Kinetoplastibacterium galatii 0 625 994695 1 Candidatus Kinetoplastibacterium crithidii species 0 834 33056 36 0 189384 genus 1 1 species Candidatus Tremblaya princeps 0 189385 36 0 327159 1211 50 2 1 genus Candidatus Accumulibacter 1 Candidatus Accumulibacter phosphatis species 0 1161 327160 383 0 206389 21086 order Rhodocyclales 22 1 1 3 Azonexaceae family 0 2008795 1128 25 1 2 Dechloromonas genus 0 1103 73029 10 1 species Dechloromonas aromatica 0 259537 1093 1 6 Rhodocyclaceae family 4984 0 75787 139 0 551759 1379 33 1 2 Aromatoleum genus 1346 0 551760 1 species Aromatoleum aromaticum 0 146937 2329 42 2 1 Azospira genus 0 2287 146939 species Azospira oryzae 1 75788 0 1137 1 no rank 0 1137 1898103 species Rhodocyclaceae bacterium 1 2008794 0 14591 442 12 1 Zoogloeaceae family genus Thauera 6 1 252 0 33057 8321 1 species Thauera chlorobenzoica 0 1197 96773 1298 0 1134435 species Thauera humireducens 1 59405 0 1521 1 Thauera aromatica species 2 no rank 0 2609274 4053 0 2059 85643 1 species Thauera sp. MZ1T 1 species Thauera sp. K11 0 2005884 1994 268 5828 0 12960 genus Azoarcus 1 5 Azoarcus olearius species 1 1367 0 418699 0 1082 2067960 species Azoarcus sp. SY39 1 0 2629479 3111 no rank 2 0 748247 1541 species Azoarcus sp. KH32C 1 0 198107 1570 Azoarcus sp. CIB species 1 0 1406 33809 no rank 2 0 219 543913 1 species beta proteobacterium CB 1187 0 1904640 1 species Betaproteobacteria bacterium GR16-43 3615 0 80840 314751 order Burkholderiales 1 234 no rank 17 0 17945 224471 species [Polyangium] brachysporum 1 0 1592 413882 0 1497 318147 31 1 2 genus Paucibacter no rank 1 0 1466 2642959 species Paucibacter sp. KCTC 42545 1 1466 0 1768242 64 0 2361 93681 Roseateles genus 1 2 0 76731 2297 1 species Roseateles depolymerans 2 1 Mitsuaria genus 0 1973 65047 70 0 2648776 1903 no rank 1 0 1658665 1903 species Mitsuaria sp. 7 1 88 0 1714 45 1 2 genus Leptothrix 1669 0 34029 Leptothrix cholodnii species 1 2 1 Thiomonas genus 32012 0 2402 47 0 2355 926 1 Thiomonas intermedia species genus Rubrivivax 1 2 68 0 2636 28067 1 species Rubrivivax gelatinosus 0 2568 28068 Methylibium genus 2 1 55 0 316612 1645 1 Methylibium petroleiphilum species 0 105560 1590 0 212743 2125 68 1 2 genus Rhizobacter species Rhizobacter gummiphilus 1 0 946333 2057 2 no rank 0 80841 3301 0 1834205 2447 species Burkholderiales bacterium YL45 1 species Burkholderiales bacterium GJ-E10 1 1469502 0 854 family Oxalobacteraceae 1 29 324 0 36073 75682 2 0 1189 846 genus Oxalobacter 1 2 1187 0 847 species Oxalobacter formigenes 1 6 1 Massilia genus 149698 0 10092 266 0 1512 2045208 species Massilia sp. B2 1 1 Massilia sp. ZMN-3 species 0 2072590 2352 0 2609279 3740 2 no rank 0 1707785 1780 species Massilia sp. WG5 1 0 1960 1678028 1 species Massilia sp. NR 4-1 0 1141883 2222 1 species Massilia putida 1186 0 303379 7 1 3 Herminiimonas genus 610 0 204773 1 Herminiimonas arsenicoxydans species 0 1809410 569 1 Herminiimonas arsenitoxidans species 4 1 genus Collimonas 0 6105 202907 117 species Collimonas fungivorans 1 0 1892 158899 Collimonas pratensis species 1 0 1924 279113 1 species Collimonas arenae 0 279058 2172 7 1 Janthinobacterium genus 0 8744 29580 164 1 species Janthinobacterium agaricidamnosum 0 1446 55508 0 2610881 5043 4 no rank Janthinobacterium sp. 1_2014MBL_MicDiv species 1 0 1644131 1909 0 1938606 1870 1 species Janthinobacterium sp. LM6 1 species Janthinobacterium sp. Marseille 375286 0 645 0 619 1236179 1 Janthinobacterium sp. B9-8 species Janthinobacterium svalbardensis species 1 0 368607 2091 genus Herbaspirillum 6 1 205 8433 0 963 0 1305 341045 Herbaspirillum hiltneri species 1 0 2116 92645 1 Herbaspirillum frisingense species no rank 1 0 1000 2624150 0 1000 2025949 Herbaspirillum sp. meg3 species 1 0 80842 1532 Herbaspirillum rubrisubalbicans species 1 0 964 2275 1 species Herbaspirillum seropedicae 72455 0 80864 1166 59 1 family Comamonadaceae 17 2739 0 219181 Ottowia genus 1 3 2109914 0 1415 1 species Ottowia sp. KADR8-3 0 2645081 1307 1 no rank 1 Ottowia sp. oral taxon 894 species 0 1307 1658672 Simplicispira genus 2 1 2 0 352450 970 species Simplicispira sp. SC1-8 1 0 2109915 968 1 0 1436289 633 genus Candidatus Symbiobacter 1 2 Candidatus Symbiobacter mobilis species 1 0 632 1436290 79 0 283 6204 genus Comamonas 1 4 0 1557 1082851 species Comamonas serinivorans 1 Comamonas kerstersii species 1 0 1484 225992 3084 0 285 1 species Comamonas testosteroni Limnohabitans genus 3 1 2 0 665874 1328 no rank 2 1326 0 2626134 1 Limnohabitans sp. 103DPR2 species 0 562 1678129 1 Limnohabitans sp. 63ED37-2 species 1678128 0 764 0 2062 2490452 genus 2 0 937 1458425 1 Comamonadaceae bacterium A1 species 1 species Comamonadaceae bacterium B1 1125 0 1458426 27 0 52972 2809 Polaromonas genus 1 3 no rank 1 0 2638319 1287 0 296591 1287 1 species Polaromonas sp. JS666 Polaromonas naphthalenivorans species 1 0 216465 1495 57 0 1649468 1519 genus Melaminivora 2 1 1462 0 2641902 1 no rank species Melaminivora sp. SC2-9 1 0 2109913 1462 genus Variovorax 5 1 189 0 34072 10683 4913 0 34073 species Variovorax paradoxus 1 3465 0 663243 no rank 2 species Variovorax sp. PAMC 28711 1 0 1153 1795631 2126319 0 2312 1 species Variovorax sp. PMC12 436515 0 2116 1 Variovorax boronicumulans species 21 2313 0 201096 Alicycliphilus genus 2 1 0 2292 179636 Alicycliphilus denitrificans species 1 1 genus 0 2678886 1492 0 1492 2116657 1 Melaminivora sp. SC2-7 species 0 1391 238749 14 1 2 Diaphorobacter genus 0 1546149 1377 1 Diaphorobacter polyhydroxybutyrativorans species genus Rhodoferax 5 1 63 5570 0 28065 Rhodoferax antarcticus species 1 0 995 81479 1 species Rhodoferax koreense 0 1842727 1944 0 1177 1484693 1 Rhodoferax saidenbachensis species 0 192843 1391 species Rhodoferax ferrireducens 1 Ramlibacter genus 2 1 59 0 3448 174951 94132 0 3389 species Ramlibacter tataouinensis 1 0 12534 12916 463 9 1 genus Acidovorax no rank 4 6070 0 2684926 232721 0 1491 Acidovorax sp. JS42 species 1 1 Acidovorax sp. T1 species 0 1858609 1387 0 1623 1842533 species Acidovorax sp. RAC01 1 1 Acidovorax sp. KKS102 species 0 358220 1569 0 1611 721785 Acidovorax ebreus species 1 0 80867 1656 Acidovorax avenae species 1 0 1271 553814 species Acidovorax sp. NA3 1 0 1463 80869 1 species Acidovorax citrulli 90 1417 0 364316 Verminephrobacter genus 2 1 0 1327 364317 species Verminephrobacter eiseniae 1 Hydrogenophaga genus 1 4 121 47420 0 4733 0 3624 2610897 no rank 2 0 2148 795665 Hydrogenophaga sp. PBC species 1 species Hydrogenophaga sp. RAC07 1 0 1842537 1476 1 Hydrogenophaga crassostreae species 0 1763535 988 1 5 genus Delftia 80865 0 9444 367 0 180282 2117 Delftia tsuruhatensis species 1 80866 0 2470 1 Delftia acidovorans species 2 no rank 0 4490 2613839 Delftia sp. Cs1-4 species 1 742013 0 2344 0 2146 1920191 species Delftia sp. HK171 1 42 1 family Alcaligenaceae 0 58860 506 480 507 0 2124 8 1 2 genus Alcaligenes species Alcaligenes faecalis 1 0 511 2116 1921582 0 1978 34 2 1 genus Orrella 1 species Orrella dioscoreae 0 1851544 1944 5 413 0 90243 genus Oligella 1 2 species Oligella urethralis 1 0 90245 408 1472344 0 558 1 2 1 genus Basilea 1 Basilea psittacipulmonis species 557 0 1472345 genus Bordetella 17 1 852 0 26173 517 0 94624 1299 1 Bordetella petrii species 1 Bordetella genomosp. 13 species 0 463040 1667 Bordetella holmesii species 1 644 0 35814 Bordetella genomosp. 6 species 1 0 463024 1621 0 1331258 1671 1 Bordetella pseudohinzii species Bordetella bronchialis species 1 0 463025 1843 species Bordetella genomosp. 9 1 1297 0 1416803 0 3163 518 1 species Bordetella bronchiseptica species Bordetella genomosp. 8 1 1416806 0 1462 0 103855 1808 1 species Bordetella hinzii 1573 0 2630031 1 no rank Bordetella sp. H567 species 1 0 1697043 1573 species Bordetella parapertussis 1 1846 0 519 0 520 1410 1 Bordetella pertussis species 0 521 862 Bordetella avium species 1 1 species Bordetella trematum 0 1811 123899 0 463014 1344 1 Bordetella flabilis species 1 3 Advenella genus 0 1447 290425 15 1 Advenella kashmirensis species 0 310575 748 Advenella mimigardefordensis species 1 684 0 302406 2 1 Castellaniella genus 359336 0 2037 51 1 Castellaniella defragrans species 1986 0 75697 Pusillimonas genus 2 1 8 0 762 305976 no rank 1 0 2640016 754 Pusillimonas sp. T7-7 species 1 0 754 1007105 0 29574 1461 genus 2 571 0 29575 species Taylorella equigenitalis 1 1 species Taylorella asinigenitalis 0 890 84590 0 419 1100891 1 genus 1 species Paenalcaligenes hominis 0 643674 419 0 21008 222 752 1 6 Achromobacter genus 3525 0 217203 1 Achromobacter spanius species 0 1790 217204 Achromobacter insolitus species 1 0 8416 85698 1 Achromobacter xylosoxidans species 0 2189 2626865 1 no rank 0 2189 1758194 species Achromobacter sp. AONIH1 1 Achromobacter denitrificans species 1 0 32002 4336 927 0 119060 122502 family Burkholderiaceae 1 84 4 1 Polynucleobacter genus 0 971 44013 2 species Polynucleobacter duraquae 1 0 1835254 274 1 species Polynucleobacter necessarius 576610 0 370 Polynucleobacter asymbioticus species 1 0 325 576611 genus 1 528 0 2571159 species Paraburkholderia rhizoxinica 1 0 412963 528 genus Burkholderia 41 1 3532 0 32008 63360 7 species group 0 9465 111527 1 species Burkholderia thailandensis 2281 0 57975 0 1637837 836 1 species Burkholderia sp. MSMB0266 0 13373 776 1 species Burkholderia mallei Burkholderia sp. MSMB617WGS species 1 0 1637831 813 1 Burkholderia pseudomallei species 0 2909 28450 0 1126 342113 Burkholderia oklahomensis species 1 1637841 0 724 1 Burkholderia sp. MSMB0852 species 11 no rank 0 2613784 11296 861 0 1740162 1 species Burkholderia sp. Bp5365 Burkholderia sp. KJ006 species 1 1040 0 416344 0 1405 1097668 1 species Burkholderia sp. YI23 1 species Burkholderia sp. HB1 0 1093 1678678 0 1248 758796 1 species Burkholderia sp. RPE67 1 Burkholderia sp. 2002721687 species 877 0 1468409 1 species Burkholderia sp. Bp7605 1062 0 1740163 0 879 1795874 1 species Burkholderia sp. PAMC 28687 species Burkholderia sp. PAMC 26561 1 0 814 1795043 1 species Burkholderia sp. CCGE1001 640510 0 942 640512 0 1075 species Burkholderia sp. CCGE1003 1 species group 19 0 87882 31888 1 species Burkholderia stabilis 0 1551 95485 0 663 488731 Burkholderia seminalis species 1 1 Burkholderia pyrrocinia species 0 694 60550 species Burkholderia vietnamiensis 1 0 1562 60552 0 87883 2422 1 Burkholderia multivorans species 1 Burkholderia ambifaria species 0 1326 152480 0 773 1503055 Burkholderia territorii species 1 0 95486 4950 1 Burkholderia cenocepacia species 0 488447 1153 species Burkholderia contaminans 1 Burkholderia metallica species 1 0 488729 974 0 1762 482957 1 species Burkholderia lata 0 5159 292 species Burkholderia cepacia 1 Burkholderia diffusa species 1 0 488732 765 species Burkholderia pseudomultivorans 1 955 0 1207504 0 1503054 1204 1 species Burkholderia stagnalis 0 101571 2965 1 species Burkholderia ubonensis species Burkholderia latens 1 0 488446 886 0 265293 996 [Pseudomonas] mesoacidophila species 1 0 1128 152500 1 species Burkholderia dolosa Burkholderia gladioli species 1 0 2944 28095 1 species Burkholderia glumae 0 2671 337 41899 0 1564 species Burkholderia plantarii 1 646 0 106589 17805 genus Cupriavidus 9 1 1 Cupriavidus metallidurans species 0 1827 119219 1 species Cupriavidus necator 106590 0 3046 species Cupriavidus sp. USMAA1020 1 0 367825 2297 0 1639 248026 1 species Cupriavidus pinatubonensis 0 82541 1627 Cupriavidus gilardii species 1 1 species Cupriavidus basilensis 0 68895 2023 0 2640874 4700 2 no rank 1 Cupriavidus sp. USMAHM13 species 0 1389192 2172 0 876364 2528 species Cupriavidus sp. USMAA2-4 1 0 48736 12228 264 1 5 Ralstonia genus 0 105219 1782 1 species Ralstonia mannitolilytica 0 5572 305 species Ralstonia solanacearum 1 0 190721 1775 1 Ralstonia insidiosa species Ralstonia pickettii species 1 0 329 2835 357 15860 0 1822464 genus Paraburkholderia 1 12 1 Paraburkholderia fungorum species 0 1183 134537 1026 0 252970 1 species Paraburkholderia phenoliruptrix 1 species Paraburkholderia terrae 0 1111 311230 0 148447 1324 1 Paraburkholderia phymatum species Paraburkholderia phytofirmans species 1 0 1264 261302 36873 0 1517 species Paraburkholderia xenovorans 1 1536 0 2026199 1 Paraburkholderia aromaticivorans species 0 1549 948107 1 Paraburkholderia sprentiae species 0 2055 75105 1 Paraburkholderia caribensis species species Paraburkholderia hospita 1 169430 0 1429 0 1509 2615204 1 no rank species Paraburkholderia sp. SOS3 1 0 1509 1926494 1 genus 1209 0 1827195 0 758793 1209 Burkholderia sp. RPE64 species 1 0 93217 9614 217 1 10 genus Pandoraea 1 Pandoraea apista species 0 93218 1032 Pandoraea oxalativorans species 1 0 1242 573737 species Pandoraea pulmonicola 1 93221 0 1064 0 93219 956 Pandoraea norimbergensis species 1 924 0 445709 1 species Pandoraea thiooxydans Pandoraea faecigallinarum species 1 0 656179 995 1 Pandoraea pnomenusa species 0 1199 93220 1 Pandoraea sputorum species 0 93222 1025 1 species Pandoraea vervacti 656178 0 960 0 32003 16719 113 43 1 order Nitrosomonadales 1 14 family Methylophilaceae 0 32011 4206 36 34 81682 0 1617 Methylovorus genus 3 1 0 266009 854 1 species Methylovorus glucosotrophus 0 2634027 729 no rank 1 1 species Methylovorus sp. MP688 0 887061 729 1 2 genus Methylobacillus 0 706 404 7 0 405 699 species Methylobacillus flagellatus 1 2 0 16 440 genus Methylophilus 2 1 no rank 1 0 438 2630143 1 Methylophilus sp. TWE2 species 0 438 1662285 3 1 Methylotenera genus 0 359407 680 6 Methylotenera versatilis species 1 1055487 0 380 0 359408 294 Methylotenera mobilis species 1 0 727 1679002 1 3 1 Candidatus Methylopumilus genus 1 species Candidatus Methylopumilus planktonicus 430 0 1581557 1 species Candidatus Methylopumilus turicensis 0 1581680 296 5 1 family Sterolibacteriaceae 0 2948 2008793 56 genus Sulfuritalea 1 2 46 1524 0 1054211 1478 0 748811 1 species Sulfuritalea hydrogenivorans 19 0 378210 1368 genus Methyloversatilis 1 2 no rank 1 0 2639971 1349 1 Methyloversatilis sp. RAC08 species 0 1349 1842540 0 2772226 1798 4 family 940 0 1778653 28 2 1 Sulfuriferula genus 1 no rank 0 2637784 912 0 912 1985873 species Sulfuriferula sp. AH1 1 Sulfuricella genus 1 2 20 0 935200 858 1 Sulfuricella denitrificans species 0 838 649841 12 1 Nitrosomonadaceae family 0 206379 4749 19 0 1446 35798 10 1 4 Nitrosospira genus 0 35799 510 species Nitrosospira briensis 1 1 species Nitrosospira lacus 0 1288494 543 0 383 1231 1 species Nitrosospira multiformis genus Nitrosomonas 1 7 8 0 914 3284 no rank 2 1007 0 2609265 Nitrosomonas sp. AL212 species 1 153948 0 496 1 Nitrosomonas sp. Is79A3 species 0 511 261292 0 732 915 1 species Nitrosomonas europaea 0 520 44577 Nitrosomonas ureae species 1 0 364 916 species Nitrosomonas eutropha 1 1 species Nitrosomonas communis 0 44574 653 75 1924 0 90627 family Gallionellaceae 1 4 17 0 1235 314343 genus Sideroxydans 2 1 1 species Sideroxydans lithotrophicus 0 1218 63745 genus 1 0 614 96 1 species Gallionella capsiferriformans 0 614 370405 0 981 2008790 9 1 3 family Thiobacillaceae 16 972 0 919 genus Thiobacillus 2 1 36861 0 956 species Thiobacillus denitrificans 1 1807140 0 2476 4 7 1 Acidithiobacillia class 56 0 225057 2472 order Acidithiobacillales 1 6 18 0 2416 225058 Acidithiobacillaceae family 5 1 Acidithiobacillus genus 4 1 28 2398 0 119977 1 species Acidithiobacillus ferrivorans 0 731 160808 0 809 33059 species Acidithiobacillus caldus 1 1 species Acidithiobacillus ferrooxidans 0 830 920 1 0 74152 2856 phylum Elusimicrobia 10 1 0 447830 1282 class 4 4 1 Endomicrobiales order 1783344 0 1282 1 3 1 Endomicrobiaceae family 0 1783343 1281 13 0 1268 1408194 genus 2 Endomicrobium proavitum species 1 710 0 1408281 0 558 1408204 Candidatus Endomicrobium trichonymphae species 1 1 641853 0 1039 Elusimicrobia class 1 4 1038 0 641854 1 1 3 Elusimicrobiales order family Elusimicrobiaceae 1 2 7 0 1037 641876 1 genus 0 423604 1030 0 423605 1030 species Elusimicrobium minutum 1 99260 0 534 no rank 1 0 167965 534 1 species uncultured Termite group 1 bacterium 13 phylum 0 6664 40117 0 6664 203693 22 1 13 class Nitrospira 1 12 Nitrospirales order 0 6642 189778 50 family Nitrospiraceae 11 1 21 0 6592 189779 4 1 Leptospirillum genus 0 179 1278 5 0 655606 474 1 species group 0 180 474 species Leptospirillum ferrooxidans 1 1 species group 0 480 261386 480 0 178606 1 species Leptospirillum ferriphilum 1 species group 0 319 261385 1 Leptospirillum sp. Group II 'CF-1' species 0 319 1660083 1823 0 28261 1 genus species Thermodesulfovibrio yellowstonii 1 28262 0 1823 genus Nitrospira 5 1 10 0 1234 3470 1 species Nitrospira moscoviensis 1154 0 42253 0 758 1715989 1 species Candidatus Nitrospira inopinata 0 1325564 771 species Nitrospira japonica 1 1 species Nitrospira defluvii 0 777 330214 0 1783257 375601 clade 97 1 28 phylum Verrucomicrobia 0 348596 74201 16 2 1 class Spartobacteria 0 205 134549 1 0 134550 204 genus 1 1 no rank 2648876 0 204 Candidatus Xiphinematobacter sp. Idaho Grape species 1 204 0 1704307 6 1 Verrucomicrobiae class 0 203494 336818 9 1 5 Verrucomicrobiales order 0 48461 336809 53 31 0 336756 1647988 Akkermansiaceae family 4 1 0 239934 336725 26 3 1 Akkermansia genus 0 2204 1679444 1 Akkermansia glycaniphila species 1 Akkermansia muciniphila species 0 334495 239935 0 1955630 842 3 5 1 class Methylacidiphilae 3 0 717963 839 order Methylacidiphilales 4 1 0 836 717964 family 3 3 1 Methylacidiphilum genus 0 836 511745 3 species Methylacidiphilum fumariolicum 1 0 378 591154 0 455 511746 species Methylacidiphilum infernorum 1 417295 0 3115 no rank 2 Verrucomicrobia bacterium species 1 0 1690 2026799 0 1425 1637999 1 Verrucomicrobia bacterium IMCC26134 species class Opitutae 1 12 65 0 414999 7600 162 0 6720 415000 order Opitutales 7 1 6 1 family Opitutaceae 0 6558 134623 67 17 0 178440 1814 genus Opitutus 1 2 1 species Opitutus terrae 1797 0 107709 2851 0 278955 no rank 1 794903 0 2851 species Opitutaceae bacterium TAV5 1 2 1 Lacunisphaera genus 0 1826 1961799 24 1802 0 1838286 Lacunisphaera limnophila species 1 415001 0 815 2 4 1 Puniceicoccales order 4 813 0 415002 Puniceicoccaceae family 1 3 4 809 0 442430 genus Coraliomargarita 1 2 Coraliomargarita akajimensis species 1 0 395922 805 phylum 5 134625 0 1545 0 1921781 1545 17 5 1 class Kiritimatiellae 1 4 Kiritimatiellales order 0 1528 1921782 24 1 3 family Kiritimatiellaceae 1504 0 1921783 3 33 1921784 0 1501 Kiritimatiella genus 1 2 Kiritimatiella glycovorans species 1 1468 0 1307763 3 phylum 0 256845 5250 25 0 1313211 5250 Lentisphaeria class 1 3 840 0 5225 278082 Victivallales order 2 1 1674876 0 4385 no rank 1 0 2094242 4385 1 Victivallales bacterium CCUG 44730 species 1 36 Planctomycetes phylum 0 203682 16124 6 0 203683 12732 74 1 26 Planctomycetia class 7 order 3560 0 2691356 Isosphaeraceae family 1 7 52 0 1763524 3560 2 1 genus Singulisphaera 1084 0 466152 3 0 466153 1081 1 species Singulisphaera acidiphila Isosphaera genus 1 2 3 0 127 765 0 128 762 1 Isosphaera pallida species 0 1659 1763521 11 1 2 genus Paludisphaera 0 1648 1387353 1 Paludisphaera borealis species 176 0 6290 112 Planctomycetales order 11 1 0 126 6114 19 10 1 Planctomycetaceae family 3 1 Planctomyces genus 0 118 3630 27 0 2648843 3603 2 no rank 1 species Planctomyces sp. SH-PL14 0 1295 1632864 1 species Planctomyces sp. SH-PL62 0 1636152 2308 Planctopirus genus 1 2 7 0 1649480 651 644 0 120 species Planctopirus limnophila 1 5 865 0 1649490 genus Rubinisphaera 1 2 860 0 119 species Rubinisphaera brasiliensis 1 1 2 Fuerstia genus 0 1936111 949 8 0 941 1891926 species Fuerstia marisgermanicae 1 4 order 0 2691354 1831 0 2691357 1255 family 3 genus Pirellula 1 2 2 0 498 123 0 496 125 Pirellula staleyi species 1 1 genus 757 0 265488 0 757 265606 Rhodopirellula baltica species 1 0 2691358 576 family 1 0 576 1676125 1 genus 1 Thermogutta terrifontis species 0 1331910 576 3 order 0 2691355 977 3 1 family Gemmataceae 977 0 1914233 4 973 0 113 2 2 1 genus Gemmata no rank 1 971 0 2622970 0 971 1630693 species Gemmata sp. SH-PL17 1 7 1 Phycisphaerae class 666505 0 2700 9 0 1345 666506 34 4 1 order Phycisphaerales 0 1311 666507 17 1 3 family Phycisphaeraceae 9 666508 0 1294 genus Phycisphaera 1 2 Phycisphaera mikurensis species 1 0 547188 1285 0 1346 2483366 order 2 family 2 2483367 0 1346 genus 2 1346 0 2483368 0 535 1940790 1 Phycisphaerae bacterium L21-RPul-D3 species species Phycisphaerae bacterium ST-PulAB-D4 1 0 811 1941349 class 2 0 686 2517206 1 2 Candidatus Brocadiales order 0 1127829 686 8 0 1127830 678 family 1 genus 1 380738 0 678 0 174633 678 species Candidatus Kuenenia stuttgartiensis 1 0 4086 204428 25 phylum 1 25 class Chlamydiia 204429 0 4086 14 0 2177 51291 2 1 14 order Chlamydiales 13 1 Chlamydiaceae family 0 2175 809 1 12 no rank 0 2174 1113537 1 12 genus Chlamydia 0 2174 810 62 0 91 85991 Chlamydia pecorum species 1 139 0 1457153 species Chlamydia gallinacea 1 Chlamydia felis species 1 254 0 83556 0 260 83559 Chlamydia suis species 1 0 83558 240 Chlamydia pneumoniae species 1 1 species Chlamydia trachomatis 0 813 119 1 Chlamydia muridarum species 131 0 83560 0 235 83554 species Chlamydia psittaci 1 1 Chlamydia caviae species 0 370 83557 Chlamydia avium species 1 0 1457141 160 0 83555 113 1 species Chlamydia abortus 0 1963360 1895 5 1 10 order Parachlamydiales 5 1 Parachlamydiaceae family 0 92713 1100 2 1 0 515 282132 Candidatus Protochlamydia genus 2 1 1 Candidatus Protochlamydia naegleriophila species 0 514 389348 1 2 Parachlamydia genus 0 83551 583 2 Parachlamydia acanthamoebae species 1 0 581 83552 0 543 92714 family 2 genus Waddlia 2 1 2 71666 0 543 Waddlia chondrophila species 1 0 71667 541 5 0 247 92712 Simkaniaceae family 2 1 0 242 34093 1 genus 1 species Simkania negevensis 0 83561 242 0 11181 57723 phylum 20 class Blastocatellia 3 1 5 0 1562566 986 1 2 genus Chloracidobacterium 0 458032 981 5 1 Chloracidobacterium thermophilum species 0 458033 976 93 0 204432 10195 class Acidobacteriia 17 1 order Acidobacteriales 1 12 67 0 204433 8050 0 204434 7983 89 1 11 Acidobacteriaceae family 3 1 Granulicella genus 0 940557 2845 28 0 940615 1452 1 Granulicella tundricola species 0 940614 1365 species Granulicella mallensis 1 1178 0 33973 9 2 1 Acidobacterium genus Acidobacterium capsulatum species 1 0 1169 33075 1 2 genus Candidatus Koribacter 0 1292 658061 6 1 Candidatus Koribacter versatilis species 0 1286 658062 Terriglobus genus 3 1 13 0 2579 392733 species Terriglobus saanensis 1 870903 0 1062 1 species Terriglobus roseus 0 1504 392734 1 4 order Solibacterales 0 332160 2052 60 family Solibacteraceae 1 3 16 0 1992 332161 14 0 1976 332162 genus Candidatus Solibacter 2 1 Candidatus Solibacter usitatus species 1 0 332163 1962 phylum 2 0 2138240 314 class 2 314 0 2138243 2 order 314 0 2138246 1 2 Coprothermobacteraceae family 0 2138247 314 1 0 313 68335 genus 1 1 species Coprothermobacter proteolyticus 313 0 35786 0 2323 1275 3 no rank 0 1783234 1275 clade 3 clade 2 0 1086 95901 0 2497643 1086 class 2 2 order 1086 0 2497644 0 2497645 1086 2 family 52 1086 0 1551504 genus Candidatus Babela 1 2 Candidatus Babela massiliensis species 1 0 673862 1034 189 0 95818 phylum 1 1895827 0 189 1 no rank 0 2056494 189 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species