members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4782 5830007 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 10952 0 superkingdom 4452 Bacteria 1 5768226 2 40 43 phylum 0 13128 200918 188708 13128 38 class 43 0 1 Thermotogae 0 28 order Thermotogales 1 7812 2419 19 1 Thermotogaceae family 17 0 5 2656 188709 33 1241 2335 1 Thermotoga genus 11 0 1 species 0 Thermotoga maritima 132 2336 1 species 0 Thermotoga caldifontis 1508419 81 0 species 1 Thermotoga naphthophila 93930 77 Thermotoga profunda species 1 0 353 1508420 4 no rank 0 2631113 361 1 species 0 Thermotoga sp. 2812B 1157948 98 0 species 1 Thermotoga sp. Cell2 1157947 56 131 126738 0 1 species Thermotoga sp. RQ7 Thermotoga sp. RQ2 0 1 species 76 126740 1 species 0 Thermotoga neapolitana 139 2337 1 species 0 Thermotoga petrophila 65 93929 1 Pseudothermotoga 5 genus 0 18 1410 1643951 177758 479 0 1 species Pseudothermotoga lettingae 119394 347 0 species 1 Pseudothermotoga thermarum 57487 84 Pseudothermotoga hypogea 0 species 1 Pseudothermotoga elfii 1 species 0 38322 482 family 10 0 1 Fervidobacteriaceae 5137 1643950 8 36 3836 2420 Thermosipho 1 0 5 genus 1817 2676525 0 2 no rank 1 species 0 Thermosipho sp. 1063 906 1462747 911 1437364 Thermosipho sp. 1070 0 1 species species 1 0 Thermosipho melanesiensis 929 46541 Thermosipho africanus 1 species 0 1054 2421 1293 2422 18 4 genus 0 1 Fervidobacterium 2423 225 Fervidobacterium islandicum species 1 0 2424 562 0 1 species Fervidobacterium nodosum Fervidobacterium pennivorans 0 species 1 488 93466 1643946 972 10 6 order 0 1 Kosmotogales family 5 0 1 Kosmotogaceae 1643948 962 4 1184396 265 1 genus 0 1 species 0 Mesotoga prima 1184387 265 1 Kosmotoga 3 genus 0 4 693 651456 Kosmotoga pacifica 0 species 1 390 1330330 299 651457 0 1 species Kosmotoga olearia 12 1643947 4306 Petrotogales 1 0 8 order 0 family 7 4294 1643949 0 genus 3 Marinitoga 1 160798 2641 33 149715 1337 species 1 0 Marinitoga piezophila 0 no rank 1 2640159 1271 1271 1545835 Marinitoga sp. 1137 species 1 0 1 Defluviitoga 2 genus 0 3 1511648 1037 Defluviitoga tunisiensis 0 1 species 1006576 1034 4 616 28236 1 Petrotoga 2 genus 0 69499 612 Petrotoga mobilis 0 1 species 1783272 4189953 1676 clade 0 121 354139 1239 1 Firmicutes phylum 697 0 9 class 0 1794 526524 Erysipelotrichales 1 0 order 9 8 526525 1794 Erysipelotrichaceae 1 0 family 8 16 1786 128827 1 Erysipelothrix genus 3 0 4 834 1647 435 1648 species 1 0 Erysipelothrix rhusiopathiae 395 1514105 0 species 1 Erysipelothrix larvae 1 Turicibacter 2 genus 0 5 191303 529 1 no rank 0 2638206 524 1712675 524 0 species 1 Turicibacter sp. H121 1729679 125 genus 1 0 0 1 species Faecalibaculum rodentium 125 1702221 282 544447 1 no rank 0 1834207 282 Erysipelotrichaceae bacterium I46 0 1 species 5421 909932 10 class 30 0 1 Negativicutes 0 4 order 1843488 303 4 909930 303 Acidaminococcaceae 1 0 4 family 3 904 299 Acidaminococcus 1 0 3 genus 162 905 Acidaminococcus fermentans species 1 0 species 1 0 Acidaminococcus intestini 187327 134 28 909929 3451 Selenomonadales 1 0 order 14 5 1691 1843490 1 Sporomusaceae family 4 0 1686 365348 6 3 genus 0 1 Pelosinus 365349 807 1 species 0 Pelosinus fermentans 0 no rank 1 873 2629460 0 species 1 Pelosinus sp. UFO1 484770 873 1843491 1732 10 0 9 family Selenomonadaceae 1 774 158846 2 0 2 genus Megamonas 1 772 158847 Megamonas hypermegale 0 species 1 0 genus 6 Selenomonas 1 948 970 17 Selenomonas sputigena species 1 0 243 69823 258 971 Selenomonas ruminantium 1 species 0 no rank 3 0 430 2637378 713030 157 Selenomonas sp. oral taxon 136 0 1 species species 1 0 Selenomonas sp. oral taxon 920 117 1884263 712538 156 1 species 0 Selenomonas sp. oral taxon 478 11 order 0 1 Veillonellales 1657 1843489 12 1 Veillonellaceae family 10 0 17 31977 1645 3 genus 0 1 Veillonella 764 29465 6 Veillonella rodentium species 1 0 248315 203 29466 555 species 1 0 Veillonella parvula 1 Negativicoccus genus 2 0 1 136 909928 1702287 135 Negativicoccus massiliensis 0 1 species Megasphaera 1 0 2 genus 4 238 906 Megasphaera elsdenii 1 species 0 234 907 39948 490 1 genus 2 0 1 Dialister Dialister pneumosintes 0 1 species 489 39950 1 266 1676648 1 Limnochordia 5 class 0 265 1676649 6 4 order 0 1 Limnochordales 3 family 0 1 Limnochordaceae 259 1676650 5 22 1676651 254 Limnochorda 1 0 2 genus Limnochorda pilosa 1 species 0 232 1555112 133802 186801 127 205 class 0 1 Clostridia 651 2770089 0 order 3 498 2770092 2 family 0 498 499228 2 2 genus 0 1 Tepidanaerobacter species 1 0 Tepidanaerobacter acetatoxydans 499229 496 family 1 0 153 2770093 0 1 genus 291988 153 Thermosediminibacter oceani 1 species 0 153 291990 0 4 order Natranaerobiales 1 705 485256 11 7 485255 694 1 Natranaerobiaceae family 3 0 0 genus 2 Natranaerobius 1 687 375928 5 682 375929 Natranaerobius thermophilus 0 species 1 Clostridiales 1 0 order 150 307 186802 109918 68298 436 9 0 family 3 Syntrophomonadaceae 1 0 1 genus 281 862 Syntrophomonas wolfei 1 species 0 863 281 genus 1 0 129001 146 146 86170 species 1 0 Syntrophothermus lipocalidus 4023 2304686 0 family 12 genus 3 0 2304692 1850 1515 406 species 1 0 Ruminiclostridium thermocellum 1 species 0 [Clostridium] clariflavum 288965 673 Herbivorax saccincola 0 1 species 771 1677857 Ruminiclostridium 1 0 2 genus 19 1508657 625 1521 606 0 species 1 [Clostridium] cellulolyticum 0 2 genus Mageeibacillus 1 1637257 183 1 Mageeibacillus indolicus 1 species 0 182 884684 1 genus 0 233 2304691 0 species 1 [Clostridium] stercorarium 233 1510 2 599 236752 1 Fastidiosipila 2 genus 0 597 236753 1 species 0 Fastidiosipila sanguinis 0 no rank 1 137 2305130 species 1 0 Ruminiclostridium sp. KB18 1834198 137 genus 1 0 396 2304693 [Clostridium] thermosuccinogenes 0 1 species 84032 396 family 1 0 138 990719 990721 138 0 1 genus 1 species 0 Christensenella massiliensis 138 1805714 1 Clostridiaceae 40 family 0 54 76367 31979 1730 114627 4 0 genus 3 Alkaliphilus 1 Alkaliphilus oremlandii species 1 0 461876 658 1 species 0 Alkaliphilus metalliredigens 208226 1068 850 390805 genus 1 0 850 1424294 species 1 0 Geosporobacter ferrireducens Mordavella genus 1 0 4 1981033 348 1485 70624 1 Clostridium 30 genus 0 Clostridium beijerinckii species 1 0 1520 4062 3558 1502 0 species 1 Clostridium perfringens Clostridium tyrobutyricum 0 species 1 1519 1270 1064 84022 1 species 0 Clostridium aceticum 2851 1492 0 species 1 Clostridium butyricum 1542 1474 Clostridium novyi species 1 0 species 1 0 Clostridium argentinense 29341 1878 Clostridium formicaceticum 0 1 species 1089 1497 1755 46867 Clostridium chauvoei 0 species 1 Clostridium tetani 0 species 1 2103 1513 1493 1703 0 1 species Clostridium cellulovorans 1488 1592 species 1 0 Clostridium acetobutylicum 1923 1216932 Clostridium bornimense 0 1 species Clostridium botulinum 1 species 0 14692 1491 1366 84023 Clostridium autoethanogenum species 1 0 238834 1660 Clostridium estertheticum 0 1 species 0 species 1 Clostridium taeniosporum 1940 394958 0 1 species Clostridium scatologenes 1548 2307 Clostridium pasteurianum 0 1 species 1501 3588 1 species 0 Clostridium saccharoperbutylacetonicum 3001 36745 217159 2318 0 1 species Clostridium carboxidivorans 2014 1534 0 1 species Clostridium kluyveri species 1 0 Clostridium sporogenes 1723 1509 Clostridium saccharobutylicum 1 species 0 169679 2581 0 1 species Clostridium ljungdahlii 1538 1408 787 2614128 0 2 no rank 1042156 120 0 species 1 Clostridium sp. SY8519 0 1 species Clostridium sp. BNL1100 667 755731 1494 1404 1 species 0 Clostridium cochlearium 1561 3165 Clostridium baratii 0 1 species 1 Candidatus Arthromitus 4 genus 0 35 3105 49082 0 no rank 3 3070 2638829 1041504 1018 Candidatus Arthromitus sp. SFB-rat-Yit 1 species 0 0 1 species Candidatus Arthromitus sp. SFB-mouse 49118 1014 1508644 1038 0 1 species Candidatus Arthromitus sp. SFB-mouse-NL 0 2 family 178 216572 1 178 459786 1 Oscillibacter 2 genus 0 177 351091 Oscillibacter valericigenes 0 species 1 14 9011 186803 Lachnospiraceae 1 0 family 26 1 genus 0 352 2719231 species 1 0 [Clostridium] saccharolyticum 84030 352 186928 607 0 no rank 2 39491 369 0 species 1 [Eubacterium] rectale Lachnospiraceae bacterium oral taxon 500 0 species 1 712991 238 2 1663717 511 1 Herbinix 2 genus 0 Herbinix luporum 0 1 species 509 1679721 841 167 2 0 genus 2 Roseburia 1 Roseburia hominis 1 species 0 165 301301 genus 1 0 2569097 804 804 39488 1 species 0 [Eubacterium] hallii genus 4 0 1 Lachnoclostridium 1377 1506553 9 Lachnoclostridium phocaeense 1 species 0 1871021 186 2608895 245 0 no rank 1 0 species 1 Lachnoclostridium sp. YL32 1834196 245 937 66219 0 1 species Lachnoclostridium phytofermentans 694 28050 0 1 genus 694 39485 [Eubacterium] eligens 1 species 0 Blautia 1 0 3 genus 1 689 572511 240 2648079 0 no rank 1 240 1796616 Blautia sp. YL58 1 species 0 0 species 1 Blautia hansenii 448 1322 1 Cellulosilyticum genus 2 0 2 1446 698776 1444 29360 1 species 0 Cellulosilyticum lentocellum 2039240 410 1 genus 0 410 28446 Anaerotignum propionicum 0 1 species 1 1140 830 Butyrivibrio 1 0 3 genus 0 species 1 Butyrivibrio hungatei 527 185008 Butyrivibrio proteoclasticus species 1 0 43305 612 0 1 genus 244 2719313 208479 244 0 species 1 [Clostridium] bolteae 1 556 207244 1 Anaerostipes 2 genus 0 649756 555 1 species 0 Anaerostipes hadrus 31984 222 4 0 2 family Heliobacteriaceae 1 genus 1 0 218 2697 Heliobacterium modesticaldum 0 species 1 35701 218 0 family 10 Peptostreptococcaceae 1 8180 186804 23 Clostridioides 1 0 genus 2 3 3844 1870884 1496 3841 Clostridioides difficile 0 species 1 287 1481960 genus 1 0 Peptoclostridium acidaminophilum 1 species 0 1731 287 1 Paeniclostridium 2 genus 0 3 1945 1849828 1 species 0 Paeniclostridium sordellii 1505 1942 Acetoanaerobium 1 0 genus 2 1 186831 1035 1511 1034 species 1 0 Acetoanaerobium sticklandii 1 no rank 0 1411023 638 638 2081703 Peptostreptococcaceae bacterium oral taxon 929 1 species 0 44259 408 0 1 genus 408 143361 0 1 species Filifactor alocis no rank 8 0 1284 538999 278 539000 1 0 family 3 Clostridiales Family XVII. Incertae Sedis 1 2 277 73918 Thermaerobacter 1 0 2 genus 275 73919 0 1 species Thermaerobacter marianensis genus 1 0 2717089 211 211 2086584 Mordavella sp. Marseille-P3756 1 species 0 180 1392389 0 genus 1 Intestinimonas butyriciproducens 0 species 1 180 1297617 543314 615 2 0 3 family Clostridiales Family XIII. Incertae Sedis 1 86331 306 0 genus 1 0 1 species Mogibacterium diversum 114527 306 143393 307 0 species 1 [Eubacterium] sulci Eubacteriaceae 1 0 family 5 9 1267 186806 1 602 33951 Acetobacterium 1 0 2 genus 0 species 1 Acetobacterium woodii 33952 601 10 656 1730 1 Eubacterium 2 genus 0 0 species 1 Eubacterium limosum 1736 646 0 11 family Ruminococcaceae 1 1487 541000 37 0 no rank 1 2305133 145 Ruminococcaceae bacterium CPB6 0 species 1 145 1572656 0 genus 2 Faecalibacterium 1 216851 221 5 Faecalibacterium prausnitzii 0 1 species 853 216 genus 1 0 253238 196 253239 196 Ethanoligenens harbinense 0 1 species 3 genus 0 1 Ruminococcus 1263 516 1 0 species 1 Ruminococcus bicirculans 276 1160721 239 1264 Ruminococcus albus 0 1 species 0 1 no rank 147 552397 29343 147 species 1 0 [Clostridium] cellulosi 8 946234 225 1 Flavonifractor genus 2 0 1 species 0 Flavonifractor plautii 292800 217 3 543349 384 1 Symbiobacteriaceae 3 family 0 0 2 genus Symbiobacterium 1 381 2733 2 Symbiobacterium thermophilum 0 1 species 2734 379 Peptococcaceae 1 0 26 family 20 6634 186807 230 51196 genus 1 0 0 1 species Syntrophobotulus glycolicus 51197 230 Thermincola 1 0 2 genus 1 278993 229 Thermincola potens 0 1 species 863643 228 Dehalobacter 1 0 4 genus 6 56112 615 55583 192 species 1 0 Dehalobacter restrictus 2635733 417 2 no rank 0 Dehalobacter sp. DCA 1 species 0 206 1147129 211 1131462 Dehalobacter sp. CF 0 species 1 1 Desulfosporosinus 4 genus 0 12 1452 79206 422 79209 Desulfosporosinus meridiei species 1 0 1563 531 Desulfosporosinus orientis 0 1 species Desulfosporosinus acidiphilus 0 species 1 885581 487 1329 36853 10 0 5 genus Desulfitobacterium 1 36854 265 0 species 1 Desulfitobacterium dehalogenans Desulfitobacterium metallireducens 1 species 0 142877 337 49338 345 0 1 species Desulfitobacterium hafniense 233055 372 0 1 species Desulfitobacterium dichloroeliminans 2282742 483 1 genus 0 483 58138 species 1 0 Desulfotomaculum acetoxidans 0 genus 1 2282740 406 1 species 0 Desulfotomaculum gibsoniae 102134 406 genus 1 0 423 51514 Dehalobacterium formicoaceticum 0 species 1 423 51515 genus 1 0 471826 232 0 1 species Candidatus Desulforudis audaxviator 471827 232 7 1215 1562 1 Desulfotomaculum genus 5 0 1565 234 Desulfotomaculum nigrificans 0 species 1 1833852 282 Desulfotomaculum ferrireducens 0 1 species 59610 425 Desulfotomaculum reducens species 1 0 267 1564 Desulfotomaculum ruminis 1 species 0 Thermoanaerobacterales 1 0 order 36 26 16496 68295 543371 7396 12 0 family 13 Thermoanaerobacterales Family III. Incertae Sedis 1 92 5466 44000 Caldicellulosiruptor 1 0 genus 9 0 1 species Caldicellulosiruptor owensensis 636 55205 413889 719 Caldicellulosiruptor kronotskyensis 1 species 0 Caldicellulosiruptor obsidiansis species 1 0 717609 613 species 1 0 Caldicellulosiruptor saccharolyticus 44001 748 Caldicellulosiruptor kristjanssonii species 1 0 52765 630 31899 728 0 species 1 Caldicellulosiruptor bescii 0 species 1 Caldicellulosiruptor lactoaceticus 52766 642 413888 658 0 species 1 Caldicellulosiruptor hydrothermalis 1 Thermoanaerobacterium genus 3 0 3 28895 1918 1217 1517 0 species 1 Thermoanaerobacterium thermosaccharolyticum 29329 698 species 1 0 Thermoanaerobacterium xylanolyticum 543372 200 1 family 2 0 1 Thermoanaerobacterales Family IV. Incertae Sedis genus 1 0 199 252965 1 species 0 Mahella australiensis 252966 199 0 18 family Thermoanaerobacteraceae 1 7892 186814 15 genus 1 0 249529 523 911092 523 Caldanaerobacter subterraneus 1 species 0 1 genus 0 140458 165 1 species 0 Thermacetogenium phaeum 165 85874 0 no rank 4 283 42857 Moorella 1 0 2 genus 2 44260 160 1525 158 Moorella thermoacetica 1 species 0 Ammonifex 1 0 genus 2 3 42837 123 0 1 species Ammonifex degensii 120 42838 2 genus 0 1 Carboxydothermus 129957 349 1 1 species 0 Carboxydothermus hydrogenoformans 348 129958 1 Thermoanaerobacter genus 9 0 259 1754 6557 821 108150 1 species 0 Thermoanaerobacter italicus 1 species 0 Thermoanaerobacter kivui 2325 762 1 species 0 Thermoanaerobacter mathranii 583357 797 0 1 species Thermoanaerobacter pseudethanolicus 725 496866 no rank 2 0 2636821 1608 573062 829 Thermoanaerobacter sp. X513 1 species 0 779 399726 0 species 1 Thermoanaerobacter sp. X514 860 46354 Thermoanaerobacter wiegelii 0 1 species 725 29323 Thermoanaerobacter brockii 0 1 species 227387 982 2 family 0 genus 2 0 1 Thermodesulfobium 982 227388 3 184064 979 species 1 0 Thermodesulfobium narugense 5905 53433 12 0 11 order Halanaerobiales 1 26 972 3985 1 Halanaerobiaceae 6 family 0 1 Halanaerobium 3 genus 0 16 2330 3316 1 species 0 Halanaerobium praevalens 1836 2331 1464 656519 Halanaerobium hydrogeniformans 0 species 1 0 2 genus Halothermothrix 1 643 32636 25 31909 618 0 species 1 Halothermothrix orenii 1908 53434 4 0 4 family Halobacteroidaceae 1 675 28186 genus 1 0 28187 675 Acetohalobium arabaticum 0 species 1 4 1229 42417 1 Halobacteroides genus 2 0 42422 1225 1 species 0 Halobacteroides halobius 91061 206072 184 0 429 class Bacilli 1 197 63474 186826 Lactobacillales 1 0 164 order family 8 0 1 Aerococcaceae 186827 1766 3 7 genus 0 1 Aerococcus 1763 1375 10 299 87541 Aerococcus christensenii species 1 0 119206 195 Aerococcus sanguinicola 1 species 0 128944 194 Aerococcus urinaehominis 0 1 species Aerococcus viridans species 1 0 251 1377 1376 393 Aerococcus urinae 1 species 0 Aerococcus urinaeequi species 1 0 421 51665 20499 1300 24 family 49 0 1 Streptococcaceae 13 3845 1357 1 Lactococcus 5 genus 0 0 species 1 Lactococcus raffinolactis 1366 245 1364 489 Lactococcus piscium 1 species 0 Lactococcus lactis species 1 0 2480 1358 Lactococcus garvieae 0 1 species 1363 618 0 genus 43 Streptococcus 1 16630 1301 206 Streptococcus lutetiensis 0 1 species 150055 341 1 species 0 Streptococcus sanguinis 183 1305 Streptococcus mutans 0 species 1 1309 579 Streptococcus salivarius 0 species 1 1304 720 211 1814128 species 1 0 Streptococcus halotolerans 0 species 1 Streptococcus marmotae 265 1825069 1311 809 0 species 1 Streptococcus agalactiae 45634 176 0 1 species Streptococcus cristatus 222 1326 species 1 0 Streptococcus acidominimus 2608887 1334 0 no rank 7 202 712633 0 species 1 Streptococcus sp. oral taxon 431 101 1902136 Streptococcus sp. NPS 308 1 species 0 155 1156431 Streptococcus sp. I-G2 0 1 species 0 species 1 Streptococcus sp. 'group B' 1319 397 1 species 0 Streptococcus sp. FDAARGOS_192 209 1839799 Streptococcus sp. A12 1 species 0 149 1759399 1156433 121 1 species 0 Streptococcus sp. I-P16 species 1 0 Streptococcus parauberis 493 1348 616 1302 Streptococcus gordonii 0 1 species 197614 297 Streptococcus pasteurianus 1 species 0 1318 258 1 species 0 Streptococcus parasanguinis 1314 731 species 1 0 Streptococcus pyogenes 252 400065 Streptococcus merionis 0 species 1 1346 398 species 1 0 Streptococcus iniae 312 59310 species 1 0 Streptococcus macedonicus 0 1 species Streptococcus oralis 473 1303 315405 741 1 species 0 Streptococcus gallolyticus 1557 671232 0 3 species group 1328 667 Streptococcus anginosus 1 species 0 Streptococcus constellatus species 1 0 307 76860 Streptococcus intermedius 0 1 species 1338 583 1888195 186 species 1 0 Streptococcus himalayensis Streptococcus uberis species 1 0 1349 373 251 1811193 0 species 1 Streptococcus pantholopis Streptococcus mitis 1 species 0 533 28037 520 102684 Streptococcus infantarius 0 1 species 221 1335 0 species 1 Streptococcus equinus 1 species 0 Streptococcus pseudopneumoniae 257758 218 Streptococcus suis 0 species 1 930 1307 574 1313 0 1 species Streptococcus pneumoniae Streptococcus pluranimalium 0 species 1 82348 318 2 species group 0 119603 828 0 1 species Streptococcus dysgalactiae 303 1334 1336 525 species 1 0 Streptococcus equi 1308 504 0 1 species Streptococcus thermophilus 4342 186828 26 0 10 family Carnobacteriaceae 1 652 191769 0 1 genus 2632303 652 no rank 1 0 Marinilactibacillus sp. 15R 0 1 species 1911586 652 3 1470540 913 1 Jeotgalibaca genus 3 0 Jeotgalibaca dankookensis 0 species 1 708126 388 522 2621505 no rank 1 0 1903686 522 0 1 species Jeotgalibaca sp. PTS2502 2747 2751 7 genus 5 0 1 Carnobacterium 147709 642 Carnobacterium inhibens 1 species 0 257487 1081 no rank 2 0 Carnobacterium sp. CP1 0 species 1 405 1564681 Carnobacterium sp. 17-4 species 1 0 676 208596 1021 2751 0 1 species Carnobacterium maltaromaticum 51 22717 33958 Lactobacillaceae 1 0 58 family 0 genus 3 2742598 1268 1 species 0 Lactobacillus fermentum 192 1613 878 1598 Lactobacillus reuteri 1 species 0 0 1 species Lactobacillus mucosae 97478 198 176 1578 7216 1 Lactobacillus genus 16 0 Lactobacillus kefiranofaciens 0 species 1 267818 322 species 1 0 Lactobacillus gasseri 971 1596 Lactobacillus amylolyticus 1 species 0 282 83683 Lactobacillus delbrueckii 0 1 species 557 1584 1600 339 0 species 1 Lactobacillus acetotolerans species 1 0 Lactobacillus gallinarum 351 52242 0 1 species Lactobacillus acidophilus 479 1579 1159 2620435 4 no rank 0 1 species 0 Lactobacillus sp. CBA3605 293 2099788 2108362 170 1 species 0 Lactobacillus sp. D1501 464 1545702 1 species 0 Lactobacillus sp. wkB8 0 1 species Lactobacillus sp. CBA3606 232 2099789 33959 981 0 species 1 Lactobacillus johnsonii 439 109790 Lactobacillus jensenii 0 1 species 433 1604 species 1 0 Lactobacillus amylovorus Lactobacillus helveticus 0 species 1 727 1587 0 1 genus 2767890 393 species 1 0 Lactobacillus hokkaidonensis 1193095 393 797 2767885 genus 2 0 490 1599 Lactobacillus sakei species 1 0 307 28038 Lactobacillus curvatus 0 species 1 737 2767893 3 genus 0 1138822 314 Lactobacillus curieae 0 1 species Lactobacillus buchneri species 1 0 223 1581 Lactobacillus parabuchneri species 1 0 152331 200 0 genus 3 2767842 1328 species 1 0 Lactobacillus paraplantarum 216 60520 species 1 0 Lactobacillus pentosus 212 1589 1590 900 Lactobacillus plantarum species 1 0 1 genus 0 197 2767876 0 1 species Lactobacillus amylophilus 197 1603 genus 6 0 2776 2767879 1 species 0 Lactobacillus farciminis 450 1612 Lactobacillus allii 0 species 1 1847728 481 1074467 362 Lactobacillus heilongjiangensis species 1 0 558 392416 Lactobacillus crustorum species 1 0 Lactobacillus ginsenosidimutans 0 species 1 480 1007676 Lactobacillus alimentarius 0 species 1 1602 445 genus 2 0 2767881 957 Lactobacillus sanfranciscensis 0 1 species 426 1625 531 53444 Lactobacillus lindneri 0 species 1 0 genus 4 2767887 2111 0 1 species Lactobacillus agilis 1601 194 Lactobacillus ruminis 1 species 0 1623 190 Lactobacillus salivarius 0 species 1 1406 1624 89059 321 1 species 0 Lactobacillus acidipiscis 2767877 293 0 genus 1 293 148814 1 species 0 Lactobacillus kunkeei 2 genus 0 2767889 717 390 375175 Lactobacillus backii 0 1 species 327 1610 0 species 1 Lactobacillus coryniformis 0 genus 3 2767886 482 Lactobacillus brevis 1 species 0 302 1580 Lactobacillus koreensis 1 species 0 637971 98 Lactobacillus zymae species 1 0 267363 82 1112 2759736 0 3 genus 1597 330 species 1 0 Lactobacillus paracasei Lactobacillus casei 1 species 0 1582 424 358 47715 1 species 0 Lactobacillus rhamnosus 2061 1253 22 0 genus 6 Pediococcus 1 51663 385 Pediococcus damnosus 0 1 species 1670797 249 species group 1 0 1254 249 species 1 0 Pediococcus acidilactici Pediococcus inopinatus 1 species 0 352 114090 Pediococcus pentosaceus species 1 0 1255 604 449 187452 0 1 species Pediococcus claussenii 1 genus 0 2767892 221 240427 221 Lactobacillus paracollinoides 0 species 1 Leuconostocaceae 1 0 family 17 2 81850 5033 1 Weissella genus 6 0 16 46255 1560 0 1 species Weissella cibaria 222 137591 1249 316 species 1 0 Weissella paramesenteroides 1631871 295 0 1 species Weissella jogaejeotgali 374 165096 1 species 0 Weissella koreensis 1 species 0 Weissella ceti 759620 337 26 1243 3103 Leuconostoc 1 0 genus 9 Leuconostoc mesenteroides 0 1 species 1245 762 2685106 297 0 1 no rank 297 979982 Leuconostoc sp. C2 species 1 0 Leuconostoc garlicum 0 species 1 255248 112 0 species 1 Leuconostoc kimchii 336 136609 1246 183 Leuconostoc lactis 0 1 species Leuconostoc gelidum 1 species 0 1244 668 467 1252 Leuconostoc carnosum 1 species 0 0 1 species Leuconostoc citreum 33964 252 genus 1 0 368 46254 Oenococcus oeni 1 species 0 1247 368 no rank 1 0 263855 535 0 1 species Lactobacillales bacterium 535 1993866 Enterococcaceae 1 0 20 family 16 8385 81852 2737 1131 10 genus 3 0 1 Vagococcus 553 519472 Vagococcus teuberi species 1 0 Vagococcus penaei 0 1 species 633807 568 0 12 genus Enterococcus 1 1350 5721 68 53346 502 0 species 1 Enterococcus mundtii 939 1352 Enterococcus faecium 0 1 species 642 1354 species 1 0 Enterococcus hirae 0 1 species Enterococcus faecalis 1351 840 926 2608891 no rank 3 0 Enterococcus sp. FDAARGOS_163 0 species 1 2060306 287 333 2060307 Enterococcus sp. FDAARGOS_375 1 species 0 species 1 0 Enterococcus sp. CR-Ec1 306 2057791 Enterococcus wangshanyuanii 0 species 1 455 2005703 479 53345 Enterococcus durans 1 species 0 Enterococcus thailandicus 0 1 species 417368 537 37734 333 0 species 1 Enterococcus casseliflavus 1 51668 754 1 Tetragenococcus 2 genus 0 753 51669 1 species 0 Tetragenococcus halophilus 1 Melissococcus 2 genus 0 1 33969 763 33970 762 1 species 0 Melissococcus plutonius 142414 1385 281 0 264 order Bacillales 1 30544 90964 67 0 42 family Staphylococcaceae 1 2 genus 0 1 Auricoccucs 2005363 630 1 Auricoccus indicus 0 species 1 629 1849491 45669 168 2 genus 2 0 1 Salinicoccus 407035 166 1 species 0 Salinicoccus halodurans 4 genus 0 1 Macrococcus 1531 69965 9 Macrococcus caseolyticus species 1 0 69966 498 2619255 657 1 no rank 0 1898474 657 Macrococcus sp. IME1552 1 species 0 367 1855823 Macrococcus canis 1 species 0 28148 1279 240 0 33 genus Staphylococcus 1 985762 507 Staphylococcus agnetis 1 species 0 Staphylococcus haemolyticus 1 species 0 928 1283 0 species 1 Staphylococcus succinus 61015 786 1693 1282 1 species 0 Staphylococcus epidermidis Staphylococcus aureus 1 species 0 1280 2772 283734 529 species 1 0 Staphylococcus pseudintermedius 214473 771 species 1 0 Staphylococcus nepalensis 1 species 0 Staphylococcus lugdunensis 28035 778 155085 470 species 1 0 Staphylococcus lutrae 794 1292 Staphylococcus warneri 0 species 1 453 70258 1 species 0 Staphylococcus piscifermentans 0 species 1 Staphylococcus stepanovicii 643214 952 1281 668 Staphylococcus carnosus 1 species 0 1288 1362 Staphylococcus xylosus species 1 0 1 species 0 Staphylococcus sciuri 1296 1024 species 1 0 Staphylococcus muscae 1294 370 species 1 0 Staphylococcus kloosii 29384 684 1 species 0 Staphylococcus pettenkoferi 268 170573 29388 868 1 species 0 Staphylococcus capitis 854 29385 0 1 species Staphylococcus saprophyticus species 1 0 Staphylococcus felis 553 46127 Staphylococcus schleiferi 0 1 species 711 1295 246432 1216 Staphylococcus equorum 0 1 species 1284 465 1 species 0 Staphylococcus hyicus 845 91994 no rank 1 0 1715860 845 Staphylococcus sp. AntiMn-1 1 species 0 1286 527 0 1 species Staphylococcus simulans Staphylococcus pasteuri 1 species 0 1991 45972 70255 699 Staphylococcus condimenti 0 1 species Staphylococcus argenteus 1 species 0 985002 841 725 29382 Staphylococcus cohnii 0 species 1 0 species 1 Staphylococcus simiae 923 308354 Staphylococcus hominis 1 species 0 1290 881 1840 539002 9 no rank 0 539738 634 no rank 2 0 2 genus 0 1 Gemella 634 1378 1 633 2624949 0 1 no rank 1785995 633 Gemella sp. oral taxon 928 0 1 species 539742 1206 0 no rank 7 7 genus 0 1 Exiguobacterium 33986 1206 12 332410 191 Exiguobacterium sibiricum 0 1 species 0 4 no rank 2644629 827 360911 157 0 1 species Exiguobacterium sp. AT1b Exiguobacterium sp. MH3 0 1 species 1399115 148 species 1 0 Exiguobacterium sp. ZWU0009 1224749 261 1849031 261 0 1 species Exiguobacterium sp. U13-1 132920 176 species 1 0 Exiguobacterium antarcticum 1 186821 266 Sporolactobacillaceae 1 0 family 2 1 no rank 0 663587 265 85683 265 0 1 species [Bacillus] selenitireducens 1 Paenibacillaceae 46 family 0 41 186822 17455 76632 303 4 0 genus 2 Thermobacillus 1 Thermobacillus composti species 1 0 299 377615 98 44249 14743 1 Paenibacillus genus 36 0 169760 218 1 species 0 Paenibacillus stellifer Paenibacillus ihbetae 0 1 species 240 1870820 0 1 species Paenibacillus crassostreae 481 1763538 253 162209 species 1 0 Paenibacillus naphthalenovorans 393 1616788 Paenibacillus bovis 1 species 0 292 2044880 species group 1 0 species 1 0 Paenibacillus riograndensis 292 483937 439 189425 0 1 species Paenibacillus graminis 1462996 243 Paenibacillus yonginensis 0 species 1 species 1 0 Paenibacillus mucilaginosus 61624 542 Paenibacillus peoriae 1 species 0 59893 495 1 species 0 Paenibacillus sabinae 365617 197 261 1178515 Paenibacillus swuensis 1 species 0 Paenibacillus borealis species 1 0 160799 299 44251 464 species 1 0 Paenibacillus durus 1 species 0 Paenibacillus polymyxa 2060 1406 13 no rank 0 4801 185978 0 species 1 Paenibacillus sp. FSL R7-0273 1536772 268 species 1 0 Paenibacillus sp. BIHB4019 1870819 395 0 1 species Paenibacillus sp. FSL R5-0345 559 1536770 325 2069255 Paenibacillus sp. lzh-N1 species 1 0 species 1 0 Paenibacillus sp. FSL H7-0737 404 1536775 Paenibacillus sp. FSL R7-0331 1 species 0 286 1536773 species 1 0 Paenibacillus sp. Y412MC10 481743 265 247 1536771 species 1 0 Paenibacillus sp. FSL R5-0912 0 species 1 Paenibacillus sp. IHBB 10380 823 1566358 0 1 species Paenibacillus sp. FSL H7-0357 1536774 340 1695218 264 Paenibacillus sp. 32O-W species 1 0 species 1 0 Paenibacillus sp. FSL P4-0081 1536769 381 244 324057 species 1 0 Paenibacillus sp. JDR-2 0 1 species Paenibacillus larvae 1464 497 293 1126833 Paenibacillus beijingensis species 1 0 Paenibacillus xylanexedens species 1 0 386 528191 318 172713 Paenibacillus kribbensis 0 1 species 791 414771 1 species 0 Paenibacillus donghaensis 159743 311 Paenibacillus terrae 1 species 0 species 1 0 Paenibacillus odorifer 189426 371 589 85151 no rank 3 0 55079 589 5 3 genus 0 1 Aneurinibacillus 1500254 295 Aneurinibacillus soli 0 species 1 no rank 1 0 2642329 289 Aneurinibacillus sp. XH2 0 1 species 289 1450761 55080 1779 5 0 genus 4 Brevibacillus 1 54913 316 species 1 0 Brevibacillus formosus 1 species 0 Brevibacillus brevis 1393 484 974 1465 Brevibacillus laterosporus 0 1 species 186824 147 1 4 family 0 1 Thermoactinomycetaceae 0 2 genus Novibacillus 1 145 1677050 2 species 1 0 Novibacillus thermophilus 1471761 143 292635 1 Laceyella 0 1 genus 10333 186818 35 family 26 0 1 Planococcaceae 648802 598 0 1 genus species 1 0 Rummeliibacillus stabekisii 241244 598 Jeotgalibacillus 1 0 genus 2 5 157226 429 1508404 424 1 species 0 Jeotgalibacillus malaysiensis 2615 1569 15 5 genus 0 1 Sporosarcina 2 no rank 0 580 2647733 species 1 0 Sporosarcina sp. P33 293 1930764 Sporosarcina sp. P37 0 1 species 287 1930546 1571 1240 Sporosarcina ureae 0 1 species 1476 780 0 species 1 Sporosarcina psychrophila genus 3 0 1 Solibacillus 1339 648800 8 0 1 no rank 616 2637870 2048654 616 Solibacillus sp. R5-41 0 1 species 715 76853 species 1 0 Solibacillus silvestris 1 Planococcus 12 genus 0 57 4668 1372 1374 516 1 species 0 Planococcus kocurii Planococcus halocryophilus 0 1 species 584 1215089 609 1302659 Planococcus sp. L10.15 species 1 0 0 no rank 2 726 2662419 1526927 514 species 1 0 Planococcus sp. PAMC 21323 212 2058136 Planococcus sp. MB-3u-03 0 1 species 551 1598147 Planococcus faecalis 1 species 0 Planococcus rifietoensis 1 species 0 200991 182 347 161360 Planococcus antarcticus 0 1 species 529 414778 0 species 1 Planococcus donghaensis Planococcus maritimus 1 species 0 429 192421 0 1 species Planococcus plakortidis 1038856 138 3 1649 649 1 Kurthia genus 2 0 no rank 1 0 646 2644826 1750719 646 Kurthia sp. 11kri321 0 species 1 1 Listeriaceae family 9 0 3 4718 186820 1637 4146 39 0 6 genus Listeria 1 1643 568 0 1 species Listeria welshimeri Listeria ivanovii 0 species 1 1638 881 1642 558 1 species 0 Listeria innocua 532 1640 0 1 species Listeria seeligeri 1568 1639 1 species 0 Listeria monocytogenes 1 Brochothrix genus 2 0 10 569 2755 0 species 1 Brochothrix thermosphacta 559 2756 1 Alicyclobacillaceae 9 family 0 9 186823 1327 genus 3 0 1 Kyrpidia 1129704 523 3 257 2055160 0 1 species Kyrpidia sp. EA-1 263 33943 0 species 1 Kyrpidia tusciae 0 3 genus Tumebacillus 1 432330 472 5 Tumebacillus avium 0 species 1 305 1903704 1214604 162 Tumebacillus algifaecis 1 species 0 2 29330 323 Alicyclobacillus 1 0 genus 2 405212 321 0 species 1 Alicyclobacillus acidocaldarius 118 186817 75503 Bacillaceae 1 0 116 family 1 Virgibacillus 7 genus 0 22 4703 84406 1473 902 0 1 species Virgibacillus pantothenticus 744 1482 Virgibacillus halodenitrificans 0 1 species 163877 851 Virgibacillus necropolis 1 species 0 2620237 1528 no rank 2 0 1911587 855 Virgibacillus sp. 6R 1 species 0 403957 673 Virgibacillus sp. SK37 species 1 0 Virgibacillus phasianinus species 1 0 656 2017483 0 2 genus Aeribacillus 1 1055323 602 1 601 33936 Aeribacillus pallidus 0 species 1 1676 2675230 0 genus 2 0 1 species Bacillus kochii 859143 1094 Bacillus oceanisediminis 0 1 species 582 665099 1906945 547 0 genus 1 547 1426 Parageobacillus thermoglucosidasius 0 species 1 genus 1 0 182709 1632 Oceanobacillus iheyensis 1 species 0 1632 182710 1089 1386 46985 1 Bacillus genus 58 0 0 1 species Bacillus xiamenensis 1178537 343 324767 316 Bacillus infantis 0 species 1 1398 520 Bacillus coagulans species 1 0 Bacillus horikoshii 0 1 species 514 79883 Bacillus beveridgei species 1 0 230 632773 884 1413 Bacillus cellulosilyticus 0 species 1 species group 10 0 86661 22215 2750818 1882 0 3 no rank 2053832 564 Bacillus sp. HBCD-sjtu 0 species 1 1892404 499 Bacillus sp. ABP14 0 1 species 1839798 819 Bacillus sp. FDAARGOS_235 0 species 1 692 580165 Bacillus cytotoxicus 0 species 1 Bacillus thuringiensis 0 1 species 7290 1428 Bacillus mycoides 1 species 0 2720 1405 1 species 0 Bacillus toyonensis 643 155322 Bacillus anthracis 1 species 0 790 1392 species 1 0 Bacillus bombysepticus 661 658666 1396 7537 Bacillus cereus 1 species 0 413 1479 1 species 0 Bacillus smithii 0 species group 9 4891 653685 Bacillus vallismortis species 1 0 58 72361 1452 404 0 1 species Bacillus atrophaeus 119858 364 Bacillus sonorensis 0 species 1 1874 1423 Bacillus subtilis species 1 0 1495 1938374 0 3 species subgroup Bacillus velezensis species 1 0 492670 715 659243 134 Bacillus siamensis 0 1 species Bacillus amyloliquefaciens species 1 0 646 1390 406 1402 0 species 1 Bacillus licheniformis 1648923 290 1 species 0 Bacillus paralicheniformis 4425 185979 0 19 no rank 756828 473 Bacillus sp. WP8 1 species 0 84 1628753 species 1 0 Bacillus sp. LM 4-2 114 1446792 Bacillus sp. Pc3 1 species 0 222 98228 0 species 1 Bacillus sp. OxB-1 78 1409 Bacillus sp. (in: Bacteria) 0 1 species 2049935 55 Bacillus sp. Lzh-5 0 species 1 135 1127744 Bacillus sp. JS 0 species 1 species 1 0 Bacillus sp. 1NLA3E 666686 803 1941347 119 Bacillus sp. 275 0 1 species 1 species 0 Bacillus sp. H15-1 1856406 194 71 1574141 Bacillus sp. YP1 0 species 1 143 1774743 1 species 0 Bacillus sp. SDLI1 1 species 0 Bacillus sp. SJ-10 563169 99 Bacillus sp. BH072 0 species 1 57 1570330 539 1565991 0 species 1 Bacillus sp. X1(2014) 145 2009331 0 1 species Bacillus sp. MD-5 245 1837130 Bacillus sp. FJAT-14266 0 species 1 0 1 species Bacillus sp. IHB B 7164 1827146 653 0 species 1 Bacillus sp. 1s-1 196 2026248 99 79881 Bacillus gibsonii 0 species 1 Bacillus weihaiensis species 1 0 926 1547283 0 1 species Bacillus flexus 840 86664 species 1 0 Bacillus glycinifermentans 1664069 450 Bacillus megaterium species 1 0 1404 2213 561879 963 Bacillus safensis 0 1 species Bacillus endophyticus 1 species 0 135735 1096 1792192 433 species group 1 0 293387 433 Bacillus altitudinis 1 species 0 Bacillus methanolicus species 1 0 1471 639 33932 1023 0 1 species Bacillus cohnii 412384 744 Bacillus aryabhattai 0 species 1 Bacillus pumilus 1 species 0 1408 1719 351195 182 0 genus 1 182 1230341 Salimicrobium jeotgali 1 species 0 123 129337 3558 1 Geobacillus 15 genus 0 138 1921421 Geobacillus genomosp. 3 0 1 species Geobacillus thermodenitrificans species 1 0 305 33940 0 6 no rank 2642459 1527 species 1 0 Geobacillus sp. C56-T3 278 691437 Geobacillus sp. GHH01 species 1 0 1233873 98 374 581103 Geobacillus sp. Y4.1MC1 0 species 1 471223 553 0 1 species Geobacillus sp. WCH70 92 550542 0 species 1 Geobacillus sp. Y412MC52 0 1 species Geobacillus sp. Y412MC61 544556 132 Geobacillus stearothermophilus 0 1 species 1422 301 4 species group 0 1005 1505648 1462 162 Geobacillus kaustophilus 1 species 0 469 33941 0 1 species Geobacillus thermoleovorans 155 169283 Geobacillus lituanicus 0 species 1 219 33938 1 species 0 Geobacillus thermocatenulatus 159 129338 Geobacillus subterraneus 0 species 1 1 693 29331 1 Amphibacillus genus 2 0 1 species 0 Amphibacillus xylanus 1449 692 0 genus 1 335 175304 species 1 0 Lentibacillus amyloliquefaciens 335 1472767 1 Lysinibacillus 5 genus 0 34 4529 400634 1421 2145 0 1 species Lysinibacillus sphaericus 0 no rank 1 833 2636778 Lysinibacillus sp. YS11 0 1 species 833 2072025 Lysinibacillus fusiformis 0 species 1 28031 764 1145276 753 1 species 0 Lysinibacillus varians 2 45667 860 Halobacillus 1 0 3 genus 1 species 0 Halobacillus halophilus 377 1570 402384 481 Halobacillus mangrovi 0 species 1 0 6 genus Anoxybacillus 1 150247 2781 47 513 294699 Anoxybacillus amylolyticus 0 species 1 2639704 942 0 2 no rank 1 species 0 Anoxybacillus sp. B2M1 1490052 525 417 1490057 Anoxybacillus sp. B7M1 0 species 1 478 198467 1 species 0 Anoxybacillus gonensis Anoxybacillus flavithermus 1 species 0 33934 801 0 1 genus 459532 345 1 species 0 Terribacillus aidingensis 345 586416 3 genus 0 1 Fictibacillus 1329200 1025 1 504 1221500 species 1 0 Fictibacillus phosphorivorans 255247 520 species 1 0 Fictibacillus arsenicus 3271 2675234 0 genus 5 692 79880 0 species 1 Bacillus clausii 0 species 1 Bacillus pseudofirmus 654 79885 Bacillus lehensis 1 species 0 300825 706 Bacillus halodurans 1 species 0 86665 350 199441 869 0 species 1 Bacillus krulwichiae 2675229 1661 genus 2 0 species 1 0 Bacillus simplex 1277 1478 Bacillus muralis 0 1 species 264697 384 0 1 no rank 960 84086 960 243899 endosymbiont 'TC1' of Trimyema compressum 0 1 species 33974 133 0 no rank 2 0 2 genus Ndongobacter 1 1930845 133 1 Ndongobacter massiliensis 1 species 0 1871025 132 class 15 0 1 Tissierellia 5570 1737404 25 1737405 5006 19 0 12 order Tissierellales 1 0 family 2 2042895 1270 1270 1505664 3 0 2 genus Gottschalkia 1 1267 1556 species 1 0 Gottschalkia acidurici 15 1570339 3717 1 Peptoniphilaceae family 9 0 1 Parvimonas genus 2 0 2 1113 543311 0 1 species Parvimonas micra 33033 1111 0 2 genus Finegoldia 1 848 150022 3 0 species 1 Finegoldia magna 1260 845 162289 534 0 1 genus 534 2637196 0 1 no rank Peptoniphilus sp. ING2-D1G 0 1 species 534 1912856 134 1161127 1 genus 0 Murdochiella vaginalis 1 species 0 1852373 134 2 genus 0 165779 1073 1870984 514 Anaerococcus mediterraneensis species 1 0 33034 559 Anaerococcus prevotii 0 species 1 539 1737407 no rank 2 0 genus 2 0 1 Ezakiella 1582879 539 1 1852374 538 Ezakiella massiliensis 1 species 0 67819 363 0 5 phylum 0 class 5 Fimbriimonadia 1 363 1663419 4 1663425 359 3 order 4 0 1 Fimbriimonadales 2 356 1663426 Fimbriimonadaceae 1 0 3 family 0 2 genus Fimbriimonas 1 354 1005038 9 1005039 345 species 1 0 Fimbriimonas ginsengisoli 200795 4267 0 phylum 42 class 5 0 1 Ardenticatenia 562 1382928 4 Ardenticatenales 1 0 4 order 7 1382929 558 5 1382930 551 1 Ardenticatenaceae family 3 0 Candidatus Promineofilum 1 0 genus 2 1 1988031 546 545 1806508 Candidatus Promineofilum breve species 1 0 0 7 class 292625 588 588 292629 6 0 7 order Anaerolineales 1 292628 582 4 family 6 0 1 Anaerolineaceae Brevefilum 1 0 2 genus 1 205 2019482 Brevefilum fermentans 0 species 1 204 1986204 1324991 162 0 no rank 1 162 1889813 species 1 0 Anaerolineaceae bacterium oral taxon 439 1 Anaerolinea genus 2 0 1 233189 211 210 167964 Anaerolinea thermophila 0 1 species 0 class 11 Chloroflexia 1 1351 32061 5 Chloroflexales 1 0 order 10 10 1346 32064 0 4 suborder 549 1508595 549 1508635 6 family 4 0 1 Roseiflexaceae Roseiflexus 1 0 genus 3 5 120961 543 Roseiflexus castenholzii species 1 0 120962 293 0 no rank 1 245 2609473 245 357808 1 species 0 Roseiflexus sp. RS-1 0 5 suborder 787 1508594 787 1106 2 5 family 0 1 Chloroflexaceae 1 Chloroflexus genus 4 0 11 1107 785 1 Chloroflexus aurantiacus species 2 0 235 471 1108 480224 236 Chloroflexus sp. Y-400-fl strain 1 0 152260 303 Chloroflexus aggregans 1 species 0 301297 806 2 class 8 0 1 Dehalococcoidia 1 Dehalogenimonas genus 3 0 12 312 670486 1 species 0 Dehalogenimonas formicexedens 1839801 170 0 1 species Dehalogenimonas lykanthroporepellens 552810 130 492 1202465 1 0 order 4 Dehalococcoidales 1 0 3 family 491 1202464 0 3 genus Dehalococcoides 1 491 61434 8 237581 103 0 no rank 1 1522671 103 species 1 0 Dehalococcoides sp. UCH007 Dehalococcoides mccartyi 1 species 0 380 61435 Caldilineae 1 0 class 5 2 348 475962 Caldilineales 1 0 order 4 3 346 475963 Caldilineaceae 1 0 3 family 2 343 475964 0 genus 2 Caldilinea 1 233191 341 9 332 133453 Caldilinea aerophila 0 species 1 6 class 0 1 Thermomicrobia 612 189775 7 0 4 subclass 432 85000 432 85001 3 order 4 0 1 Sphaerobacterales 255728 429 suborder 3 0 3 family 0 1 Sphaerobacteraceae 85002 429 2 427 2056 6 0 2 genus Sphaerobacter 1 0 species 1 Sphaerobacter thermophilus 2057 421 order 1 0 173 189776 1 family 0 173 189777 1 genus 0 499 173 500 173 1 species 0 Thermomicrobium roseum 35 phylum 0 6665 1297 Deinococci 1 0 35 class 37 188787 6665 Thermales 1 0 17 order 17 68933 2875 36 2858 188786 Thermaceae 1 0 16 family 0 genus 8 Thermus 1 270 1667 37 174 56956 Thermus brockianus 1 species 0 Thermus parvatiensis 0 species 1 456163 183 1 species 0 Thermus aquaticus 203 271 1 species 0 Thermus scotoductus 144 37636 186 2619321 no rank 1 0 Thermus sp. CCB_US3_UF1 species 1 0 1111069 186 246 56957 Thermus oshimai 0 species 1 Thermus thermophilus 0 species 1 274 494 1 Oceanithermus genus 2 0 2 208447 373 187137 371 species 1 0 Oceanithermus profundus 1 186191 216 Marinithermus 1 0 2 genus 0 species 1 Marinithermus hydrothermalis 186192 215 3 genus 0 1 Meiothermus 65551 566 1 0 species 1 Meiothermus ruber 277 336 Meiothermus silvanus species 1 0 52022 229 2762275 395 order 2 0 332247 395 0 2 family 2 genus 0 1 Truepera 395 332248 11 Truepera radiovictrix 1 species 0 384 332249 53 118964 3358 Deinococcales 1 0 15 order 3305 183710 13 family 14 0 1 Deinococcaceae Deinococcus 1 0 genus 13 60 3292 1298 0 1 species Deinococcus soli Cha et al. 2016 1309411 282 0 1 species Deinococcus gobiensis 502394 348 0 species 1 Deinococcus puniceus 1182568 163 260 2623546 0 1 no rank Deinococcus sp. NW-56 species 1 0 260 2080419 0 1 species Deinococcus radiodurans 231 1299 species 1 0 Deinococcus swuensis 289 1182571 Deinococcus maricopensis 1 species 0 351 309887 Deinococcus proteolyticus 1 species 0 358 55148 262 68909 0 1 species Deinococcus geothermalis species 1 0 Deinococcus actinosclerus 1768108 284 310783 159 0 1 species Deinococcus deserti 432329 245 0 1 species Deinococcus peraridilitoris 0 2 no rank 250 1859062 0 2 genus Thermobaculum 1 262406 250 2 248 166501 Thermobaculum terrenum 0 1 species 0 clade 156 1798711 3561143 31 1117 3561143 Cyanobacteria 1 0 phylum 156 1 no rank 0 1983111 672 718217 672 1 species 0 cyanobacterium endosymbiont of Epithemia turgida 1161 24901 86 34 order 0 1 Nostocales 2661849 7445 8 family 0 Calothrix 1 0 genus 8 58 1186 7445 2619626 6254 6 no rank 0 Calothrix sp. NIES-3974 0 species 1 2005462 811 0 species 1 Calothrix sp. NIES-4101 1216 2005461 Calothrix sp. NIES-4071 species 1 0 2005469 1522 Calothrix sp. PCC 7507 0 1 species 99598 754 species 1 0 Calothrix sp. NIES-2098 1115 1954171 836 1337936 Calothrix sp. 336/3 1 species 0 Calothrix parietina 0 1 species 32054 1133 13438 1162 46 0 family 18 Nostocaceae 1 264688 1839 10 genus 3 0 1 Trichormus species 1 0 Trichormus variabilis 264691 850 1 species 0 Trichormus azollae 1164 979 10 genus 0 1 Nostoc 1177 8207 83 0 1 species Nostoc flagelliforme 883 1306274 272131 902 1 species 0 Nostoc punctiforme 6339 2593658 0 no rank 7 28072 1005 Nostoc sp. PCC 7524 0 species 1 0 1 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 759 1618022 1261031 916 1 species 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' Nostoc sp. PCC 7120 0 1 species 103690 740 Nostoc sp. NIES-3756 species 1 0 1751286 1042 1869241 853 Nostoc sp. CENA543 1 species 0 317936 1024 Nostoc sp. PCC 7107 1 species 0 4 genus 0 1 Anabaena 3346 1163 29 0 no rank 2 2619674 2236 1 species 0 Anabaena sp. WA102 1647413 1121 0 1 species Anabaena sp. 90 46234 1115 1165 1081 1 species 0 Anabaena cylindrica Rivulariaceae 1 0 3 family 16 1185 1762 1 Rivularia genus 2 0 5 1746 373984 0 no rank 1 2676603 1741 1741 373994 Rivularia sp. PCC 7116 0 1 species 837 1219117 0 1 no rank 0 species 1 Nostocales cyanobacterium HT-58-2 1940762 837 1892263 1333 9 0 3 family Hapalosiphonaceae 1 3 1324 1190 Fischerella 1 0 genus 2 no rank 1 0 1321 494603 0 species 1 Fischerella sp. NIES-3754 1321 1752063 2 1890505 909 1 Chroococcidiopsidales 4 order 0 1890528 907 11 0 3 family Chroococcidiopsidaceae 1 896 54298 1 genus 2 0 1 Chroococcidiopsis 895 54299 0 species 1 Chroococcidiopsis thermalis 1301283 22759 subclass 45 0 0 order 25 Chroococcales 1 1118 15364 25 1890464 5989 45 family 7 0 1 Chroococcaceae 0 genus 1 102231 726 no rank 1 0 2623012 726 Gloeocapsa sp. PCC 7428 0 1 species 1173026 726 1 268175 1994 Chondrocystis 1 0 2 genus 1 no rank 0 1993 2648896 0 species 1 Chondrocystis sp. NIES-4102 2005460 1993 22 3224 669357 1 Geminocystis 3 genus 0 3202 2625037 0 2 no rank 1496 1617448 0 1 species Geminocystis sp. NIES-3709 Geminocystis sp. NIES-3708 species 1 0 1706 1615909 7 1890450 5753 Aphanothecaceae 1 0 family 10 1135 1453359 1 2 genus 0 1 Candidatus Atelocyanobacterium Candidatus Atelocyanobacterium thalassa 1 species 0 1134 713887 0 2 genus 1230 2546365 0 species 2 1230 2546366 395962 600 0 strain 1 Cyanothece sp. PCC 8802 1 strain 0 Cyanothece sp. PCC 8801 41431 630 no rank 2 0 575 92682 76023 575 4 0 2 genus Halothece 1 571 2632878 1 no rank 0 65093 571 species 1 0 Halothece sp. PCC 7418 762 263510 0 1 genus 0 species 1 762 2546360 0 1 strain Cyanothece sp. ATCC 51142 43989 762 28070 2044 genus 2 0 2546359 1123 species 1 0 strain 1 0 Cyanothece sp. PCC 7822 1123 497965 1 species 0 921 2546356 65393 921 Cyanothece sp. PCC 7424 0 1 strain 0 family 3 Cyanobacteriaceae 1 1300 1890452 5 102234 1295 5 2 genus 0 1 Cyanobacterium 1290 379064 1 species 0 Cyanobacterium aponinum Microcystaceae 1 0 family 4 29 2297 1890449 2268 1125 32 0 genus 3 Microcystis 1 2643300 690 1 no rank 0 1967666 690 0 1 species Microcystis sp. MC19 1546 1126 Microcystis aeruginosa 0 species 1 0 order 20 Oscillatoriales 1 1150 7395 68 1892252 3157 20 4 family 0 1 Microcoleaceae 2 1205 2621 1 Trichodesmium genus 2 0 1206 2619 Trichodesmium erythraeum 0 species 1 516 44471 0 genus 1 516 2642155 0 1 no rank species 1 0 Microcoleus sp. PCC 7113 516 1173027 Cyanothecaceae 1 0 family 3 44 335 1892249 33 43988 291 1 Cyanothece 2 genus 0 258 2649277 0 no rank 1 258 395961 1 species 0 Cyanothece sp. PCC 7425 2626 1892254 33 0 family 6 Oscillatoriaceae 1 1155738 1316 2 0 2 genus Moorea 1 1314 1155739 Moorea producens 0 species 1 12 1277 1158 Oscillatoria 1 0 3 genus Oscillatoria acuminata 0 1 species 118323 653 species 1 0 Oscillatoria nigro-viridis 612 482564 0 family 3 Gomontiellaceae 1 1892255 843 3 1 840 241421 Crinalium 1 0 2 genus 241425 839 1 species 0 Crinalium epipsammum Coleofasciculaceae 1 0 3 family 17 1892251 366 1 Geitlerinema genus 2 0 3 63132 349 1 no rank 0 346 2648775 0 1 species Geitlerinema sp. PCC 7407 346 1173025 1 Pleurocapsales 8 order 0 7 4015 52604 9 509 1890500 Hyellaceae 1 0 family 3 500 44474 2 2 genus 0 1 Pleurocapsa Pleurocapsa minor 0 species 1 498 54308 11 3499 1890498 Dermocarpellaceae 1 0 4 family 1 Stanieria 3 genus 0 28 3488 102115 0 1 no rank 2642663 1913 1913 1807358 Stanieria sp. NIES-3757 0 1 species 0 1 species Stanieria cyanosphaera 1547 102116 6 799 307596 Gloeobacteria 1 0 class 6 6 307595 793 Gloeobacterales 1 0 5 order Gloeobacteraceae 1 0 4 family 9 1890422 787 Gloeobacter 1 0 3 genus 7 778 33071 413 33072 1 species 0 Gloeobacter violaceus Gloeobacter kilaueensis 1 species 0 358 1416614 184 1890424 3507057 Synechococcales 1 0 57 order 3 family 0 1 Pseudanabaenaceae 1890436 751 4 Pseudanabaena 1 0 genus 2 3 1152 747 0 no rank 1 744 2593292 82654 744 Pseudanabaena sp. PCC 7367 0 species 1 461 2303730 0 family 2 461 170610 3 2 genus 0 1 Halomicronema Halomicronema hongdechloris 0 1 species 458 1209493 1 Acaryochloridaceae family 3 0 3 719 1890429 Acaryochloris 1 0 genus 2 3 155977 716 155978 713 0 1 species Acaryochloris marina 1890428 1372 1 0 5 family Merismopediaceae 1 33 1142 1371 Synechocystis 1 0 genus 4 3 no rank 0 1338 2640012 460 1147 0 species 1 Synechocystis sp. PCC 6714 1148 439 Synechocystis sp. PCC 6803 species 1 0 0 1 species Synechocystis sp. IPPAS B-1465 439 2116702 1 Synechococcaceae 32 family 0 44 141531 1890426 543 13034 1 genus 0 Dactylococcopsis salina 0 1 species 292566 543 0 1 genus 272 146785 146786 272 species 1 0 Thermosynechococcus elongatus 3 genus 0 1 Cyanobium 167375 3761 52 1 no rank 0 2627006 1896 1851505 1896 Cyanobium sp. NIES-981 species 1 0 1 species 0 Cyanobium gracile 1813 59930 136911 1129 757 0 genus 26 Synechococcus 1 135640 2626047 23 no rank 0 195253 302 Synechococcus sp. PCC 6312 1 species 0 1916956 1251 0 species 1 Synechococcus sp. SynAce01 195498 223 Synechococcus sp. PCC 7117 1 species 0 771 1173263 Synechococcus sp. PCC 7502 0 1 species species 1 0 Synechococcus sp. KORDI-100 1280380 7484 0 species 1 Synechococcus sp. CC9605 34106 110662 64471 1235 species 1 0 Synechococcus sp. CC9311 0 1 species Synechococcus sp. PCC 73109 224 374982 55918 166314 1 species 0 Synechococcus sp. WH 8109 species 1 0 Synechococcus sp. JA-2-3B'a(2-13) 321332 264 Synechococcus sp. CC9902 1 species 0 316279 1275 Synechococcus sp. JA-3-3Ab 1 species 0 321327 216 0 1 species Synechococcus sp. WH 8103 29410 3409 1 species 0 Synechococcus sp. WH 8102 3416 84588 species 1 0 Synechococcus sp. PCC 7002 32049 218 366 1827144 Synechococcus sp. NIES-970 1 species 0 Synechococcus sp. KORDI-49 0 species 1 5237 585423 195248 189 Synechococcus sp. PCC 8807 1 species 0 Synechococcus sp. WH 7803 1 species 0 3610 32051 1 species 0 Synechococcus sp. RCC307 1275 316278 14073 585425 Synechococcus sp. KORDI-52 0 species 1 Synechococcus sp. PCC 7003 1 species 0 374981 260 1350461 318 Synechococcus sp. UTEX 2973 0 1 species 32046 318 species 1 0 Synechococcus elongatus Synechococcus lividus 0 species 1 33070 196 18 3359945 1213 1 Prochloraceae 5 family 0 genus 4 0 1 Prochlorococcus 3359927 1218 129 Prochlorococcus marinus 0 1 species 1219 2578333 no rank 2 0 2627481 781465 Prochlorococcus sp. MIT 0604 0 1 species 1501268 774539 1501269 6926 species 1 0 Prochlorococcus sp. MIT 0801 0 family 6 Leptolyngbyaceae 1 1890438 2094 14 2080 47251 12 0 5 genus Leptolyngbya 1 464 1184 0 species 1 Leptolyngbya boryana no rank 3 0 2650499 1604 Leptolyngbya sp. PCC 7376 species 1 0 111781 814 1752064 386 species 1 0 Leptolyngbya sp. NIES-3755 1080068 404 0 species 1 Leptolyngbya sp. O-77 19 201174 214878 1 Actinobacteria phylum 637 0 0 class 585 Actinobacteria 1 205713 1760 654 0 25 order Bifidobacteriales 1 85004 3907 13 38 31953 3894 Bifidobacteriaceae 1 0 24 family genus 1 0 196082 96 Parascardovia denticolens 0 1 species 96 78258 30 1678 3148 Bifidobacterium 1 0 19 genus Bifidobacterium bifidum 0 species 1 204 1681 268 1686 105 0 species 2 Bifidobacterium catenulatum 1 0 subspecies 1 Bifidobacterium kashiwanohense 163 630129 0 species 1 Bifidobacterium angulatum 133 1683 species 1 0 Bifidobacterium dentium 1689 124 1 species 0 Bifidobacterium adolescentis 1680 128 270 35760 Bifidobacterium choerinum 0 1 species 1684 77 0 species 1 Bifidobacterium asteroides 206 638619 species 1 0 Bifidobacterium actinocoloniiforme 28025 184 1 species 0 Bifidobacterium animalis Bifidobacterium coryneforme 0 species 1 54 1687 species 1 0 Bifidobacterium breve 266 1685 28026 106 0 species 1 Bifidobacterium pseudocatenulatum 0 species 1 Bifidobacterium indicum 1691 65 309 1694 species 1 0 Bifidobacterium pseudolongum 1 species 0 Bifidobacterium longum 216816 387 Bifidobacterium scardovii 0 species 1 158787 232 Bifidobacterium thermophilum species 1 0 105 33905 1 Gardnerella genus 2 0 2 2701 490 2702 488 Gardnerella vaginalis species 1 0 1 genus 0 196081 122 Scardovia inopinata 0 1 species 122 78259 1 Actinomycetales order 19 0 7 2037 2710 2703 2049 55 18 family 0 1 Actinomycetaceae 174 2050 0 genus 1 2051 174 0 species 1 Mobiluncus curtisii 2 185 1069494 1 Trueperella 2 genus 0 0 species 1 Trueperella pyogenes 1661 183 123 1653174 2 genus 2 0 1 Actinotignum species 1 0 Actinotignum schaalii 121 59505 1 Arcanobacterium genus 2 0 3 28263 167 Arcanobacterium haemolyticum 0 1 species 28264 164 2529408 122 genus 1 0 52773 122 Actinomyces meyeri 0 species 1 63 1877 1654 Actinomyces 1 0 9 genus 1912795 107 Actinomyces sp. VUL4_3 species 1 0 544580 223 species 1 0 Actinomyces oris 1 species 0 Actinomyces gaoshouyii 1960083 200 Actinomyces radicidentis species 1 0 111015 455 0 no rank 3 2609248 746 2081702 174 Actinomyces sp. oral taxon 897 0 species 1 316 712122 species 1 0 Actinomyces sp. oral taxon 414 1851395 256 Actinomyces sp. Chiba101 1 species 0 0 species 1 Actinomyces pacaensis 1852377 83 85009 7407 32 33 order 0 1 Propionibacteriales 0 family 19 Propionibacteriaceae 1 31957 3326 53 Propionibacterium 1 0 genus 3 8 1743 495 0 1 no rank 2608905 99 671223 99 Propionibacterium sp. oral taxon 193 1 species 0 1744 388 1 species 0 Propionibacterium freudenreichii 237 2801844 genus 1 0 0 species 1 Pseudopropionibacterium propionicum 237 1750 genus 2 0 1 Acidipropionibacterium 1912215 418 3 415 1748 Acidipropionibacterium acidipropionici 1 species 0 203133 100 0 1 genus 0 no rank 1 100 2633994 1 species 0 Propionimicrobium sp. Marseille-P3275 1871034 100 Cutibacterium 1 0 4 genus 10 1912216 485 33010 176 Cutibacterium avidum 0 species 1 1747 176 Cutibacterium acnes 1 species 0 123 33011 1 species 0 Cutibacterium granulosum 23 1182 72763 1 Tessaracoccus 5 genus 0 0 no rank 1 306 2635419 Tessaracoccus sp. T2.5-30 species 1 0 1909732 306 1 species 0 Tessaracoccus flavus 247 1610493 279 399497 species 1 0 Tessaracoccus flavescens 327 1332264 Tessaracoccus aquimaris 0 1 species 2 genus 0 1 Microlunatus 356 29404 3 29405 353 Microlunatus phosphovorus 0 species 1 51 85015 4049 Nocardioidaceae 1 0 family 13 1 Micropruina 2 genus 0 5 116071 348 1 species 0 Micropruina glycogenica 343 75385 Kribbella 1 0 genus 2 29 182639 677 0 species 1 Kribbella flavida 182640 648 594 2040 4 genus 2 0 1 Aeromicrobium 1 species 0 Aeromicrobium erythreum 590 2041 Pimelobacter 1 0 genus 2 6 2044 756 0 species 1 Pimelobacter simplex 2045 750 1623 1839 35 4 genus 0 1 Nocardioides 2045452 403 Nocardioides sp. 78 0 species 1 561 450734 Nocardioides dokdonensis 0 species 1 0 no rank 1 624 2615069 Nocardioides sp. JS614 0 species 1 624 196162 1 Kineosporiales 4 order 0 3 627 622452 83778 624 4 family 3 0 1 Kineosporiaceae 5 33981 620 1 Kineococcus genus 2 0 0 1 species Kineococcus radiotolerans 615 131568 596 85014 0 3 order 85034 596 21 0 3 family Glycomycetaceae 1 Stackebrandtia 1 0 genus 2 8 575 283810 283811 567 0 1 species Stackebrandtia nassauensis 1 no rank 0 52018 501 0 1 species Actinobacteria bacterium IMCC26256 1650658 501 29 19227 85010 1 Pseudonocardiales order 40 0 family 39 0 1 Pseudonocardiaceae 19198 2070 182 0 3 genus Actinosynnema 1 40566 1612 16 40567 826 0 1 species Actinosynnema mirum 42197 770 Actinosynnema pretiosum 0 1 species 42 1813 4821 Amycolatopsis 1 0 7 genus 0 no rank 2 2618356 1302 Amycolatopsis sp. AA4 species 1 0 1896961 680 622 1911175 Amycolatopsis sp. BJA-103 1 species 0 208439 700 Amycolatopsis japonica 1 species 0 Amycolatopsis methanolica 1 species 0 648 1814 0 1 species Amycolatopsis mediterranei 33910 880 Amycolatopsis orientalis 1 species 0 1249 31958 864 165301 3 2 genus 0 1 Lentzea 1586287 861 0 species 1 Lentzea guizhouensis 1851 280 1 genus 0 280 1852 0 1 species Saccharomonospora viridis 93 1847 4944 Pseudonocardia 1 0 genus 8 829 240495 Pseudonocardia dioxanivorans 0 1 species 4022 2619320 0 no rank 6 1688404 720 Pseudonocardia sp. EC080610-09 0 species 1 Pseudonocardia sp. HH130629-09 species 1 0 1641402 571 445576 774 species 1 0 Pseudonocardia sp. AL041005-10 Pseudonocardia sp. HH130630-07 species 1 0 644 1690815 635 1096868 0 species 1 Pseudonocardia sp. EC080625-04 678 1096856 Pseudonocardia sp. EC080619-01 species 1 0 Saccharothrix 1 0 2 genus 3 735 2071 0 species 1 Saccharothrix espanaensis 732 103731 1 Prauserella genus 2 0 1 142577 461 460 530584 0 1 species Prauserella marina 2029 700 genus 1 0 Kibdelosporangium phytohabitans species 1 0 860235 700 1 Saccharopolyspora genus 2 0 3 716 1835 713 1836 0 1 species Saccharopolyspora erythraea 14 649 43356 1 Kutzneria genus 2 0 Kutzneria albida species 1 0 635 43357 674734 625 3 0 2 genus Alloactinosynnema 1 no rank 1 0 622 2636053 1 species 0 Alloactinosynnema sp. L-07 622 1653480 47 2609 65496 Actinoalloteichus 1 0 6 genus 0 species 1 Actinoalloteichus hoggarensis 597 1470176 375 340345 Actinoalloteichus hymeniacidonis species 1 0 1001 2644606 no rank 2 0 2072503 473 Actinoalloteichus sp. AHMU CJ021 species 1 0 1612551 528 1 species 0 Actinoalloteichus sp. GBA129-24 589 1612552 0 1 species Actinoalloteichus sp. ADI127-7 33603 85006 198 order 140 0 1 Micrococcales 1 Micrococcaceae family 37 0 70 7359 1268 1 Pseudarthrobacter genus 4 0 2 764 1742993 216 121292 species 1 0 Pseudarthrobacter sulfonivorans 283 361575 0 species 1 Pseudarthrobacter phenanthrenivorans 263 85085 1 species 0 Pseudarthrobacter chlorophenolicus 1 298 32207 Rothia 1 0 genus 3 43675 181 1 species 0 Rothia mucilaginosa 116 2047 species 1 0 Rothia dentocariosa 3729 1663 83 0 genus 15 Arthrobacter 1 235627 3010 0 12 no rank 154 1118963 Arthrobacter sp. Rue61a 0 species 1 1652545 204 Arthrobacter sp. YC-RL1 0 1 species 1494608 234 0 species 1 Arthrobacter sp. PAMC 25486 238 1690248 species 1 0 Arthrobacter sp. LS16 1 species 0 Arthrobacter sp. U41 264 1849032 0 species 1 Arthrobacter sp. ERGS1:01 318 1704044 1 species 0 Arthrobacter sp. YN 2020486 207 303 1357915 Arthrobacter sp. QXT-31 0 1 species Arthrobacter sp. ATCC 21022 0 1 species 1771959 163 Arthrobacter sp. ZXY-2 0 species 1 210 1806905 0 species 1 Arthrobacter sp. PGP41 2079227 490 Arthrobacter sp. FB24 1 species 0 290399 225 Arthrobacter crystallopoietes 0 species 1 266 37928 656366 370 1 species 0 Arthrobacter alpinus 0 2 genus Glutamicibacter 1 1742989 272 5 267 256701 species 1 0 Glutamicibacter arilaitensis genus 2 0 1 Neomicrococcus 1868332 153 5 556325 148 Neomicrococcus aestuarii 1 species 0 2078575 119 1 genus 0 species 1 0 Arthrobacter sp. IHBB 11108 119 1618207 4 genus 0 1 Kocuria 57493 839 9 257 71999 Kocuria palustris species 1 0 Kocuria flava species 1 0 446860 387 186 72000 0 1 species Kocuria rhizophila genus 1 0 1742992 214 214 43663 Paenarthrobacter aurescens 0 1 species 306 1269 0 1 genus Micrococcus luteus species 1 0 1270 306 0 genus 1 113 1645 0 species 1 Renibacterium salmoninarum 113 1646 2 596707 482 Sinomonas 1 0 genus 2 480 37927 Sinomonas atrocyanea 1 species 0 0 family 3 Beutenbergiaceae 1 651 125316 3 84756 648 11 0 genus 2 Beutenbergia 1 1 species 0 Beutenbergia cavernae 637 84757 1 Dermacoccaceae family 7 0 13 145357 1044 745364 430 1 2 genus 0 1 Luteipulveratus Luteipulveratus mongoliensis 0 species 1 429 571913 6 57495 385 1 Dermacoccus 2 genus 0 379 1274 Dermacoccus nishinomiyaensis 1 species 0 57499 216 8 2 genus 0 1 Kytococcus 1276 208 species 1 0 Kytococcus sedentarius Microbacteriaceae 1 0 family 46 90 13228 85023 15 2034 1197 Curtobacterium 1 0 4 genus 374 69373 1 species 0 Curtobacterium pusillum 257496 808 2 no rank 0 Curtobacterium sp. MR_MD2014 1 species 0 409 1561023 1905847 399 Curtobacterium sp. BH-2-1-1 0 1 species 355 1655488 3 no rank 0 clade 3 0 1655489 355 Rhodoluna 1 0 3 genus 12 355 529883 species 1 0 Candidatus Rhodoluna planktonica 143 535712 Rhodoluna lacicola 0 1 species 529884 200 1 Clavibacter 6 genus 0 41 1573 1986 384 1945 28447 1 Clavibacter michiganensis 5 species 0 337 31963 1 subspecies 0 Clavibacter nebraskensis 33014 348 0 1 subspecies Clavibacter insidiosus 0 1 subspecies Clavibacter capsici 432 1874630 444 31964 1 subspecies 0 Clavibacter sepedonicus 14 genus 0 1 Microbacterium 33882 4943 73 357 162426 Microbacterium hominis 0 1 species 323 84292 0 1 species Microbacterium chocolatum Microbacterium aurum 1 species 0 36805 379 0 8 no rank 2609290 3079 0 1 species Microbacterium sp. No. 7 1714373 574 species 1 0 Microbacterium sp. str. 'China' 332 2103230 Microbacterium sp. PAMC 28756 species 1 0 1795053 372 1938334 334 Microbacterium sp. TPU 3598 1 species 0 Microbacterium sp. 1.5R species 1 0 293 1916917 Microbacterium sp. BH-3-3-3 species 1 0 424 1906742 1 species 0 Microbacterium sp. XT11 367477 348 0 1 species Microbacterium sp. CGR1 402 1696072 0 species 1 Microbacterium testaceum 2033 392 340 300019 0 1 species Microbacterium paludicola 337004 281 0 1 genus Microcella alkaliphila species 1 0 279828 281 0 1 genus 1705353 156 1 species 0 Aurantimicrobium minutum 156 708131 1 Rathayibacter genus 3 0 4 463 33886 33888 257 Rathayibacter tritici 0 1 species 145458 202 Rathayibacter toxicus species 1 0 0 1 genus 1434032 126 126 1159327 Pontimonas salivibrio species 1 0 0 genus 1 518733 357 412690 357 species 1 0 Microterricola viridarii 731 110932 1 0 2 genus Leifsonia 1 0 species 1 Leifsonia xyli 1575 730 0 genus 3 Cryobacterium 1 609 69578 3 275 2649013 0 1 no rank Cryobacterium sp. LW097 0 1 species 1978566 275 331 670052 Cryobacterium arcticum species 1 0 0 genus 2 Agromyces 1 33877 557 4 Agromyces aureus 0 species 1 453304 553 1759331 437 2 0 2 genus Cnuibacter 1 1619308 435 1 species 0 Cnuibacter physcomitrellae 1 447237 940 Frondihabitans 1 0 2 genus 0 no rank 1 939 2626248 Frondihabitans sp. PAMC 28766 0 1 species 939 1795630 149 577468 no rank 2 0 Tropheryma 1 0 2 genus 2 2038 149 147 2039 1 species 0 Tropheryma whipplei Sanguibacteraceae 1 0 family 3 3 516 145360 1 Sanguibacter genus 2 0 2 513 60919 species 1 0 Sanguibacter keddieii 511 60920 2909 85020 14 family 11 0 1 Dermabacteraceae 27 195 472568 1 Devriesea genus 2 0 472569 168 Devriesea agamarum 0 species 1 36739 159 5 genus 2 0 1 Dermabacter Dermabacter vaginalis 0 1 species 1630135 154 Brachybacterium 1 0 6 genus 21 43668 2541 330 2017485 1 species 0 Brachybacterium sp. VR2415 43669 359 Brachybacterium faecium 1 species 0 1 species 0 Brachybacterium sp. VM2412 1099 2017484 0 1 species Brachybacterium ginsengisoli 1331682 366 366 2623841 1 no rank 0 0 species 1 Brachybacterium sp. P6-10-X1 1903186 366 0 family 9 Promicromonosporaceae 1 2952 85017 23 254250 1057 7 3 genus 0 1 Isoptericola 503 139208 Isoptericola variabilis 0 species 1 547 372663 1 species 0 Isoptericola dokdonensis 1 Cellulosimicrobium 3 genus 0 4 157920 1329 1 species 0 Cellulosimicrobium cellulans 670 1710 2624466 655 0 1 no rank 655 1980001 species 1 0 Cellulosimicrobium sp. TH-20 186188 543 4 0 genus 2 Xylanimonas 1 Xylanimonas cellulosilytica 0 species 1 186189 539 125 85022 family 1 0 43673 125 1 genus 0 125 43674 Jonesia denitrificans species 1 0 2 family 0 85018 183 1862 183 2 0 genus 2 Dermatophilus 1 1 species 0 Dermatophilus congolensis 181 1863 434 85019 5 3 family 0 1 Brevibacteriaceae 1696 429 6 0 genus 2 Brevibacterium 1 423 1703 0 species 1 Brevibacterium linens 2089 85016 8 0 family 6 Cellulomonadaceae 1 1 Cellulomonas 5 genus 0 25 1707 2081 species 1 0 Cellulomonas gilvus 391 11 Cellulomonas flavigena 0 1 species 623 1711 0 no rank 1 485 2620175 Cellulomonas sp. PSBB021 0 species 1 2003551 485 Cellulomonas fimi species 1 0 557 1708 9 family 0 1 Intrasporangiaceae 1766 85021 22 19 53457 453 1 Janibacter 2 genus 0 1 species 0 Janibacter indicus 434 857417 Arsenicicoccus 1 0 genus 2 9 267408 413 404 2663846 no rank 1 0 Arsenicicoccus sp. oral taxon 190 1 species 0 404 1658671 1 Intrasporangium 2 genus 0 3 53357 428 425 53358 Intrasporangium calvum 0 1 species 265976 450 4 2 genus 0 1 Serinicoccus 446 1758689 0 species 1 Serinicoccus sp. JLT9 31 85012 4349 1 Streptosporangiales 16 order 0 0 3 family Thermomonosporaceae 1 2012 455 3 2 genus 0 1 Thermomonospora 2019 452 2 2020 450 species 1 0 Thermomonospora curvata Streptosporangiaceae 1 0 5 family 17 2004 2178 0 2 genus Streptosporangium 1 910 2000 2 0 species 1 Streptosporangium roseum 908 2001 1251 83681 5 0 2 genus Nonomuraea 1 1246 2593643 0 1 no rank 1909395 1246 Nonomuraea sp. ATCC 55076 species 1 0 12 1685 83676 1 Nocardiopsaceae family 7 0 1 Thermobifida 2 genus 0 1 83677 214 213 2021 Thermobifida fusca species 1 0 22 2013 1459 1 Nocardiopsis genus 4 0 0 species 1 Nocardiopsis dassonvillei 604 2014 0 1 species Nocardiopsis alba 53437 383 Nocardiopsis gilva 0 1 species 280236 450 13 85013 3590 Frankiales 1 0 7 order 22 74712 3577 Frankiaceae 1 0 6 family 5 genus 0 1 Frankia 3555 1854 26 Frankia casuarinae 1 species 0 580 106370 862 298654 Frankia inefficax species 1 0 2632575 782 no rank 1 0 298653 782 species 1 0 Frankia sp. EAN1pec Frankia alni 0 species 1 1859 1305 Streptomycetales 1 0 order 82 76 63498 85011 81 family 0 1 Streptomycetaceae 2062 63422 202 3908 2063 24 genus 5 0 1 Kitasatospora 717 2633591 no rank 1 0 species 1 0 Kitasatospora sp. MMS16-BH015 717 2018025 1894 643 Kitasatospora aureofaciens species 1 0 1106 2066 0 species 1 Kitasatospora setae 68173 1418 0 species 1 Kitasatospora albolonga 1883 59312 1055 genus 75 0 1 Streptomyces 698 1926 Streptomyces reticuli 0 1 species Streptomyces alfalfae 0 species 1 809 1642299 600 164348 0 1 species Streptomyces puniciscabiei 0 1 species Streptomyces pratensis 1169025 488 species 1 0 Streptomyces lividans 1916 647 species 1 0 Streptomyces formicae 1616117 964 629295 1182 2 species group 0 548 1482596 0 species subgroup 1 Streptomyces griseus species 1 0 1911 548 1 species subgroup 0 1482558 634 species 1 0 Streptomyces globisporus 634 1908 755 553510 species 1 0 Streptomyces gilvosporeus 146923 571 Streptomyces parvulus 0 species 1 Streptomyces lydicus 0 species 1 1728 47763 590 1783515 0 species 1 Streptomyces sp. S10(2016) 1406 54571 0 1 species Streptomyces venezuelae Streptomyces glaucescens 1 species 0 509 1907 1 species 0 Streptomyces cattleya 29303 529 1935 565 Streptomyces violaceoruber 1 species 0 1 species 0 Streptomyces xiamenensis 408015 487 1030 379067 0 species 1 Streptomyces bingchenggensis 568 285473 Streptomyces rubrolavendulae 0 species 1 554 68202 0 species 1 Streptomyces fulvissimus 0 1 species Streptomyces pristinaespiralis 655 38300 Streptomyces vietnamensis 0 1 species 806 362257 0 species 1 Streptomyces alboflavus 808 67267 Streptomyces niveus 0 1 species 193462 689 609 42684 Streptomyces collinus 0 species 1 1 species 0 Streptomyces leeuwenhoekii 627 1437453 Streptomyces avermitilis 0 1 species 33903 773 Streptomyces hygroscopicus 0 species 1 1642 1912 Streptomyces autolyticus species 1 0 1923 75293 92644 774 0 species 1 Streptomyces malaysiensis 1901 537 0 species 1 Streptomyces clavuligerus 68570 2537 1 species 0 Streptomyces albulus 2593676 16684 24 no rank 0 Streptomyces sp. FR-008 0 1 species 206662 972 499 234612 Streptomyces sp. TN58 species 1 0 813 2059884 0 species 1 Streptomyces sp. CMB-StM0423 697 2094021 Streptomyces sp. WAC00288 0 species 1 Streptomyces sp. CFMR 7 species 1 0 540 1649184 Streptomyces sp. CdTB01 species 1 0 782 1725411 862751 454 1 species 0 Streptomyces sp. SirexAA-E 1849967 844 1 species 0 Streptomyces sp. SAT1 835 2135430 species 1 0 Streptomyces sp. P3 711 465541 Streptomyces sp. Mg1 0 species 1 751 444103 Streptomyces sp. CNQ-509 1 species 0 Streptomyces sp. 769 0 species 1 1262452 787 837 1964449 Streptomyces sp. 3211 species 1 0 species 1 0 Streptomyces sp. fd1-xmd 1812480 655 496 1837283 0 1 species Streptomyces sp. S8 550 1561022 0 1 species Streptomyces sp. CCM_MD2014 582 1661694 0 species 1 Streptomyces sp. Tue 6075 1265601 491 Streptomyces sp. PAMC 26508 species 1 0 1972846 776 species 1 0 Streptomyces sp. Sge12 0 species 1 Streptomyces sp. 4F 572 1751294 0 1 species Streptomyces sp. M56 978 1495638 Streptomyces sp. RTd22 species 1 0 1841249 734 Streptomyces sp. CLI2509 1 species 0 752 1984801 1961713 576 Streptomyces sp. MOE7 species 1 0 1 species 0 Streptomyces noursei 726 1971 Streptomyces lavendulae 0 1 species 1914 793 0 species 1 Streptomyces xinghaiensis 643 1038928 Streptomyces pactum 0 1 species 68249 1399 0 1 species Streptomyces scabiei 1930 840 Streptomyces violaceusniger 1 species 0 68280 704 Streptomyces lincolnensis 0 species 1 1915 857 Streptomyces griseochromogenes 0 1 species 68214 739 species 1 0 Streptomyces pluripotens 1355015 479 Streptomyces albireticuli 0 species 1 634 1940 Streptomyces albus 1 species 0 1560 1888 0 2 species group 2239 1477431 1902 1648 0 species 1 Streptomyces coelicolor 0 species 1 Streptomyces sampsonii 42239 591 1950 489 Streptomyces peucetius 0 1 species 1969 578 species 1 0 Streptomyces chartreusis species 1 0 Streptomyces sp. XZHG99 2049881 575 Streptomyces cyaneogriseus 0 species 1 68192 537 1889 721 species 1 0 Streptomyces ambofaciens 245 1643683 3 order 0 1 Acidothermaceae 3 family 0 5 85032 245 1 Acidothermus 2 genus 0 5 240 28048 0 1 species Acidothermus cellulolyticus 28049 235 1 1643682 1653 Geodermatophilales 1 0 8 order 49 1652 85030 Geodermatophilaceae 1 0 7 family 1860 565 7 2 genus 0 1 Geodermatophilus Geodermatophilus obscurus 0 species 1 1861 558 0 genus 2 Modestobacter 1 530 88138 9 Modestobacter marinus 1 species 0 521 477641 genus 2 0 1 Blastococcus 508 38501 12 0 species 1 Blastococcus saxobsidens 138336 496 268 85007 47334 1 Corynebacteriales 160 order 0 Tsukamurellaceae 1 0 4 family 4 895 85028 1 Tsukamurella 3 genus 0 10 2060 891 552 57704 0 1 species Tsukamurella tyrosinosolvens 2061 329 Tsukamurella paurometabola 0 1 species 697024 113 0 no rank 1 1847725 113 0 genus 1 species 1 0 Lawsonella clevelandensis 113 1528099 607 85029 2 0 family 4 Dietziaceae 1 605 37914 4 3 genus 0 1 Dietzia 2617939 403 1 no rank 0 403 712270 0 species 1 Dietzia sp. oral taxon 368 Dietzia timorensis 0 1 species 499555 198 family 31 0 1 Nocardiaceae 13401 85025 65 Rhodococcus 1 0 genus 23 230 9201 1827 132919 516 1 species 0 Rhodococcus jostii 192944 3651 0 12 no rank 209 1807790 Rhodococcus sp. BH4 0 1 species 1653479 230 0 species 1 Rhodococcus sp. PBTS 2 Rhodococcus sp. B7740 0 1 species 1564114 278 1723645 216 Rhodococcus sp. 008 0 species 1 0 1 species Rhodococcus sp. YL-1 1045808 218 Rhodococcus sp. WMMA185 0 1 species 679318 178 437 1805827 1 species 0 Rhodococcus sp. MTM3W5.2 1653478 385 species 1 0 Rhodococcus sp. PBTS 1 0 species 1 Rhodococcus sp. H-CA8f 1727214 250 317 1570939 Rhodococcus sp. 2G species 1 0 1033922 584 0 1 species Rhodococcus sp. WB1 1 species 0 Rhodococcus sp. p52 349 935199 43767 437 0 species 1 Rhodococcus hoagii 191292 580 0 species 1 Rhodococcus aetherivorans 103816 453 0 1 species Rhodococcus pyridinivorans 377 1829 Rhodococcus rhodochrous 1 species 0 Rhodococcus qingshengii 0 1 species 334542 218 572 1830 0 1 species Rhodococcus ruber 1828 326 Rhodococcus fascians 1 species 0 1833 447 0 1 species Rhodococcus erythropolis 0 species 1 Rhodococcus opacus 1394 37919 Nocardia 1 0 7 genus 54 1817 4135 519 37332 Nocardia seriolae species 1 0 0 1 species Nocardia terpenica 530 455432 1133 37326 Nocardia brasiliensis 1 species 0 0 1 species Nocardia nova 37330 494 1 species 0 Nocardia cyriacigeorgica 736 135487 Nocardia farcinica 0 1 species 37329 669 family 9 0 1 Gordoniaceae 2499 85026 5 Gordonia 1 0 genus 8 33 2494 2053 362 1136941 0 1 species Gordonia phthalatica 382 2054 1 species 0 Gordonia bronchialis 0 2 no rank 2657482 660 272 2059875 1 species 0 Gordonia sp. YC-JH1 337191 388 species 1 0 Gordonia sp. KTR9 Gordonia polyisoprenivorans 0 1 species 376 84595 0 1 species Gordonia iterans 1004901 292 2055 389 Gordonia terrae species 1 0 66 1762 20166 Mycobacteriaceae 1 0 56 family 0 13 genus 5579 1866885 366 758802 species 1 0 Mycobacterium litorale Mycobacterium gilvum species 1 0 1804 632 Mycobacterium goodii 1 species 0 445 134601 1 species 0 Mycobacterium neoaurum 1795 313 1772 500 0 1 species Mycobacterium smegmatis 1 species 0 Mycobacterium rhodesiae 36814 381 501 1800 0 species 1 Mycobacterium chubuense 268 1766 Mycobacterium fortuitum 1 species 0 1810 480 0 1 species Mycobacterium vaccae Mycobacterium vanbaalenii species 1 0 110539 411 0 species 1 Mycobacterium aurum 1791 442 1797 332 Mycobacterium thermoresistibile species 1 0 Mycobacterium phlei species 1 0 1771 508 0 genus 1 697025 189 639313 189 Hoyosella subflava 0 species 1 1 Mycobacterium genus 34 0 630 1763 11001 13 no rank 0 4370 2642494 Mycobacterium sp. PYR15 0 1 species 387 2051552 117 1168287 Mycobacterium sp. MOTT36Y 0 species 1 Mycobacterium sp. JLS species 1 0 164757 379 Mycobacterium sp. MCS 0 1 species 164756 356 0 species 1 Mycobacterium sp. QIA-37 217 1561223 376 189918 Mycobacterium sp. KMS species 1 0 0 species 1 Mycobacterium sp. EPa45 1545728 350 Mycobacterium sp. JS623 0 1 species 502 212767 Mycobacterium sp. YC-RL4 0 species 1 1682113 345 0 1 species Mycobacterium sp. VKM Ac-1817D 291 1273687 313 1570328 0 species 1 Mycobacterium sp. NRRL B-3805 385 1879023 Mycobacterium sp. djl-10 1 species 0 0 species 1 Mycobacterium sp. WY10 1920667 352 2249310 342 species group 1 0 Mycobacterium shigaense 0 species 1 342 722731 1 species 0 Mycobacterium ulcerans 1809 299 4 species group 0 77643 823 Mycobacterium tuberculosis 1 0 species 3 233 1773 660 1765 214 Mycobacterium bovis 0 1 biotype 213 33894 Mycobacterium africanum 0 biotype 1 78331 163 species 1 0 Mycobacterium canettii species 1 0 Mycobacterium haemophilum 29311 183 0 species 1 Mycobacterium liflandii 261524 303 species 1 0 Mycobacterium kansasii 1768 338 120793 2669 0 species group 8 1137 1764 0 species 1 Mycobacterium avium 4 species 0 1 Mycobacterium intracellulare 1767 769 176 1203599 139 1 subspecies 0 Mycobacterium yongonense Mycobacterium indicus pranii 0 subspecies 1 35617 116 338 222805 Mycobacterium chimaera 1 subspecies 0 701042 267 0 species 1 Mycobacterium marseillense 339268 361 Mycobacterium colombiense 0 1 species 135 1138383 species 1 0 Mycobacterium paraintracellulare Mycobacterium marinum 0 species 1 1781 455 Mycobacterium leprae species 1 0 1769 91 Mycobacterium dioxanotrophicus species 1 0 482462 498 genus 5 0 2640 670516 Mycobacterium saopaulense 0 species 1 1578165 216 83262 334 1 species 0 Mycobacterium immunogenum 36809 1680 Mycobacterium abscessus 0 1 species 216 1774 Mycobacterium chelonae 0 1 species 1520670 194 0 species 1 Mycobacterium stephanolepidis 691 1073531 0 genus 2 Mycobacterium terrae 1 species 0 325 1788 875328 366 1 species 0 Mycobacterium sinense 2 family 0 1 Segniliparaceae 204 316606 1 0 genus 1 286801 203 0 1 species Segniliparus rotundus 286802 203 9181 1653 47 52 family 0 1 Corynebacteriaceae 51 genus 0 1 Corynebacterium 1716 9134 147 571915 127 0 1 species Corynebacterium mustelae 35755 205 species 1 0 Corynebacterium kutscheri Corynebacterium humireducens 0 species 1 1223514 270 42817 119 species 1 0 Corynebacterium argentoratense 0 species 1 Corynebacterium crudilactis 1652495 169 species 1 0 Corynebacterium imitans 156978 184 43771 210 Corynebacterium urealyticum species 1 0 Corynebacterium maris 0 species 1 219 575200 species 1 0 Corynebacterium callunae 122 1721 244 191493 Corynebacterium sphenisci species 1 0 0 1 species Corynebacterium diphtheriae 1717 197 Corynebacterium kroppenstedtii 1 species 0 161879 90 0 1 species Corynebacterium frankenforstense 295 1230998 225326 256 Corynebacterium halotolerans 1 species 0 Corynebacterium aquilae 0 species 1 203263 154 0 species 1 Corynebacterium falsenii 108486 154 0 species 1 Corynebacterium jeikeium 202 38289 Corynebacterium variabile 0 1 species 1727 285 Corynebacterium striatum species 1 0 43770 234 no rank 2 0 2624378 209 1487956 84 Corynebacterium sp. ATCC 6931 1 species 0 Corynebacterium sp. NML98-0116 0 1 species 702967 125 Corynebacterium singulare 0 1 species 161899 158 129 191610 0 1 species Corynebacterium atypicum Corynebacterium glaucum species 1 0 187491 161 0 species 1 Corynebacterium flavescens 28028 107 0 1 species Corynebacterium resistens 87 258224 115 169292 0 1 species Corynebacterium aurimucosum 97 161895 0 1 species Corynebacterium phocae Corynebacterium casei 0 species 1 137 160386 160 65058 0 species 1 Corynebacterium ulcerans 248 349751 Corynebacterium marinum 1 species 0 Corynebacterium simulans 1 species 0 146827 122 35757 135 Corynebacterium cystitidis 1 species 0 Corynebacterium doosanense 1 species 0 175 1121358 [Brevibacterium] flavum 0 1 species 92706 180 0 1 species Corynebacterium testudinoris 137 136857 1 species 0 Corynebacterium terpenotabidum 89154 215 1718 462 species 1 0 Corynebacterium glutamicum 1404244 186 Corynebacterium glyciniphilum 0 1 species 1719 138 0 1 species Corynebacterium pseudotuberculosis Corynebacterium vitaeruminis 0 species 1 38305 279 118 1705 0 species 1 Corynebacterium stationis 1072256 708 0 1 species Corynebacterium uterequi Corynebacterium ammoniagenes 1 species 0 70 1697 1408191 152 Corynebacterium deserti 1 species 0 96 1050174 1 species 0 Corynebacterium epidermidicanis Corynebacterium ureicelerivorans 0 1 species 159 401472 Corynebacterium lactis 1 species 0 1231000 103 152794 117 species 1 0 Corynebacterium efficiens 161896 91 Corynebacterium camporealensis species 1 0 25 4617 2039638 Candidatus Nanopelagicales 1 0 12 order 11 family 0 4592 2162846 0 4 genus Candidatus Nanopelagicus 1 2245 2039639 21 Candidatus Nanopelagicus abundans 1 species 0 1884916 834 Candidatus Nanopelagicus hibericus species 1 0 1884915 635 1884634 755 Candidatus Nanopelagicus limnes 0 1 species Candidatus Planktophila 1 0 genus 7 36 2347 622681 Candidatus Planktophila dulcis 0 species 1 1884914 472 species 1 0 Candidatus Planktophila vernalis 401 1884907 species 1 0 Candidatus Planktophila lacus 361 1884913 0 1 species Candidatus Planktophila limnetica 573600 386 1884905 484 Candidatus Planktophila versatilis 0 1 species Candidatus Planktophila sulfonica 0 species 1 1884904 207 290 622450 1 2 order 0 1 Actinopolysporales 622451 289 1 family 0 289 1849 0 1 genus Actinopolyspora erythraea 0 1 species 414996 289 1643684 445 0 3 order 1 Nakamurellaceae 3 family 0 6 85031 445 0 genus 2 Nakamurella 1 439 53460 2 Nakamurella multipartita 1 species 0 437 53461 7 414714 1942 1 Catenulisporales 4 order 0 family 3 0 1 Catenulisporaceae 414877 1935 11 414878 1924 9 0 2 genus Catenulispora 1 Catenulispora acidiphila 1 species 0 1915 304895 0 2 no rank 394 1643818 genus 2 0 1 Thermobispora 147067 394 9 0 1 species Thermobispora bispora 2006 385 Micromonosporales 1 0 order 20 12 8124 85008 112 8112 28056 1 Micromonosporaceae family 19 0 19 695 168694 1 Salinispora 3 genus 0 168697 340 0 species 1 Salinispora arenicola 336 168695 species 1 0 Salinispora tropica 84593 6 1 genus 0 Verrucosispora genus 6 0 1 Actinoplanes 3748 1865 42 Actinoplanes friuliensis 0 1 species 196914 692 2266 2626549 no rank 3 0 Actinoplanes sp. SE50 1 species 0 2033844 745 134676 745 0 species 1 Actinoplanes sp. SE50/110 776 649831 Actinoplanes sp. N902-109 0 1 species 748 1866 1 species 0 Actinoplanes missouriensis 1803 673534 24 4 genus 0 1 Plantactinospora 2631981 1779 3 no rank 0 609 2071627 Plantactinospora sp. BB1 0 species 1 578 2108470 Plantactinospora sp. BC1 1 species 0 Plantactinospora sp. KBS50 species 1 0 2024580 592 0 genus 4 Micromonospora 1 1873 1748 13 0 no rank 1 2617518 614 614 648999 0 1 species Micromonospora sp. L5 species 1 0 Verrucosispora maris 501 1003110 620 47850 Micromonospora aurantiaca species 1 0 2 84992 1604 1 Acidimicrobiia 7 class 0 1 Acidimicrobiales 6 order 0 22 84993 1602 family 3 0 1 Acidimicrobiaceae 84994 416 3 413 53634 24 genus 2 0 1 Acidimicrobium 0 species 1 Acidimicrobium ferrooxidans 53635 389 1164 2448023 2 family 0 1164 682522 13 0 genus 2 Ilumatobacter 1 1 species 0 Ilumatobacter coccineus 467094 1151 Rubrobacteria 1 0 6 class 3 84995 552 5 order 0 1 Rubrobacterales 84996 549 10 0 family 4 Rubrobacteraceae 1 84997 539 10 8 42255 529 Rubrobacter 1 0 3 genus 0 species 1 Rubrobacter radiotolerans 42256 273 Rubrobacter xylanophilus species 1 0 248 49319 3 1866 1497346 Thermoleophilia 1 0 5 class 1 Solirubrobacterales order 4 0 18 588673 1863 family 3 0 1 Conexibacteraceae 1845 320583 5 1 Conexibacter 2 genus 0 12 1840 191494 191495 1828 species 1 0 Conexibacter woesei 18 3945 84998 Coriobacteriia 1 0 29 class 14 order 0 1 Coriobacteriales 1462 84999 14 1 Atopobiaceae family 7 0 7 1002 1643824 243 2767353 1 genus 0 Atopobium parvulum 1 species 0 243 1382 Olsenella 1 0 4 genus 9 133925 751 Olsenella uli 0 1 species 208 133926 0 no rank 1 249 2638792 712411 249 Olsenella sp. oral taxon 807 1 species 0 Olsenella sp. Marseille-P2300 1 species 0 285 1805478 1 genus 0 Atopobium 1 1380 0 family 6 Coriobacteriaceae 1 84107 446 3 125 33870 4 0 genus 2 Coriobacterium 1 33871 121 1 species 0 Coriobacterium glomerans Collinsella 1 0 2 genus 6 155 102106 0 species 1 Collinsella aerofaciens 149 74426 163 84113 0 no rank 1 1531429 163 Coriobacteriaceae bacterium 68-1-3 0 species 1 14 order 0 1 Eggerthellales 2465 1643822 22 43 2443 1643826 Eggerthellaceae 1 0 13 family 644652 732 15 0 3 genus Gordonibacter 1 0 species 1 Gordonibacter urolithinfaciens 359 1335613 1841863 358 0 species 1 Gordonibacter massiliensis 79603 153 0 1 genus Denitrobacterium detoxificans species 1 0 153 79604 5 84111 581 Eggerthella 1 0 genus 3 0 1 species Eggerthella lenta 84112 383 193 2648737 0 1 no rank 0 species 1 Eggerthella sp. YY7918 502558 193 2 genus 0 1 Slackia 84108 148 4 84110 144 species 1 0 Slackia heliotrinireducens 84162 185 0 genus 1 84163 185 0 1 species Cryptobacterium curtum 447020 221 0 1 genus 1 species 0 Adlercreutzia equolifaciens 221 446660 0 genus 1 380 1981050 0 1 species Phoenicibacter massiliensis 1944646 380 1752188 1179 0 no rank 4 Actinobacteria bacterium IMCC19121 species 1 0 1848754 393 348 1848756 Actinobacteria bacterium IMCC26103 1 species 0 Actinobacteria bacterium IMCC25003 0 species 1 199 1848255 Actinobacteria bacterium IMCC26077 1 species 0 239 1848755 102 phylum 0 1 Tenericutes 544448 48248 9 2799557 726 2 no rank 0 Candidatus Izimaplasma 1 0 2 genus 1 1912503 726 no rank 1 0 725 2624196 0 species 1 Candidatus Izimaplasma sp. HR1 1541959 725 106 31969 45939 1 Mollicutes class 97 0 Mycoplasmatales 1 0 44 order 51 2085 20718 57 2092 20667 Mycoplasmataceae 1 0 43 family 3 genus 0 1 Ureaplasma 2129 958 6 134821 551 Ureaplasma parvum 0 species 1 1 species 0 Ureaplasma urealyticum 401 2130 2093 13394 173 genus 27 0 1 Mycoplasma 0 species 1 Mycoplasma haemocanis 251 136241 Mycoplasma mobile species 1 0 637 2118 552 29501 Mycoplasma haemofelis 0 1 species Mycoplasma crocodyli 0 1 species 50052 529 2123 572 0 1 species Mycoplasma putrefaciens Mycoplasma suis 1 species 0 238 57372 Mycoplasma dispar 1 species 0 317 86660 28227 746 Mycoplasma penetrans 1 species 0 2104 68 0 1 species Mycoplasma pneumoniae 0 1 species Mycoplasma wenyonii 141 65123 45362 466 Mycoplasma bovoculi 1 species 0 2096 400 0 1 species Mycoplasma gallisepticum 29554 508 Mycoplasma canadense 0 1 species 364 2683645 no rank 1 0 species 1 0 Mycoplasma sp. (ex Biomphalaria glabrata) 364 1749074 Mycoplasma hominis 0 species 1 704 2098 752 51365 1 species 0 Mycoplasma yeatsii 171632 150 species 1 0 Mycoplasma ovis 245 2097 Mycoplasma genitalium 0 1 species 2099 698 1 species 0 Mycoplasma hyopneumoniae 334 984991 0 1 species Mycoplasma parvum 1 species 0 Mycoplasma flocculare 2128 290 3 species group 0 3352 656088 Mycoplasma capricolum 0 species 1 2095 863 2105 860 Mycoplasma leachii species 1 0 2102 1629 Mycoplasma mycoides species 1 0 Mycoplasma arthritidis species 1 0 2111 302 Mycoplasma hyorhinis 0 species 1 2100 605 6258 2767358 12 genus 0 Mycoplasma canis 0 1 species 629 29555 587 2115 species 1 0 Mycoplasma fermentans 492 2107 Mycoplasma pulmonis 1 species 0 28903 1028 Mycoplasma bovis 0 species 1 517 2094 Mycoplasma arginini species 1 0 1 species 0 Mycoplasma cynos 552 171284 0 1 species Mycoplasma synoviae 388 2109 1 species 0 Mycoplasma bovigenitalium 405 2112 Mycoplasma californicum species 1 0 2113 288 1 species 0 Mycoplasma pullorum 48003 386 0 1 species Mycoplasma agalactiae 556 2110 Mycoplasma bovirhinis 1 species 0 430 29553 Acholeplasmatales 1 0 order 13 18 4870 186329 0 12 family Acholeplasmataceae 1 4852 2146 12 Candidatus Phytoplasma 1 0 6 genus 21 2261 33926 85632 429 1 species group 0 Candidatus Phytoplasma australiense species 1 0 429 59748 species group 3 0 1360 85620 440 202462 1 species 0 Maize bushy stunt phytoplasma Aster yellows witches'-broom phytoplasma 0 1 species 229545 425 100379 495 Onion yellows phytoplasma 1 species 0 species group 1 0 451 85630 1 species 0 Candidatus Phytoplasma mali 451 37692 0 5 genus Acholeplasma 1 2579 2147 21 616 2148 Acholeplasma laidlawii 0 species 1 0 1 species Acholeplasma brassicae 61635 460 35623 684 0 species 1 Acholeplasma oculi 38986 798 species 1 0 Acholeplasma palmae 20245 186328 33 order 39 0 1 Entomoplasmatales 22 14347 2131 1 Spiroplasmataceae family 24 0 2132 14325 165 genus 23 0 1 Spiroplasma 404 2144 1 species 0 Spiroplasma mirum Spiroplasma atrichopogonis species 1 0 1114980 413 Spiroplasma diminutum 0 1 species 807 216936 47834 629 species 1 0 Spiroplasma kunkelii 216935 921 Spiroplasma culicicola species 1 0 Spiroplasma monobiae 0 1 species 571 2136 0 1 species Spiroplasma floricola 216937 893 1 species 0 Spiroplasma taiwanense 2145 928 315358 430 Spiroplasma eriocheiris 1 species 0 960 362837 Spiroplasma cantharicola 1 species 0 1 species 0 Spiroplasma turonicum 874 216946 species 1 0 Spiroplasma corruscae 216934 724 Spiroplasma sabaudiense species 1 0 451 216944 Spiroplasma syrphidicola species 1 0 216945 462 436 216933 species 1 0 Spiroplasma chrysopicola 2133 584 0 1 species Spiroplasma citri 0 species 1 Spiroplasma helicoides 216938 705 1 species 0 Spiroplasma apis 2137 502 2 no rank 0 952 2637901 Spiroplasma sp. TU-14 0 species 1 1898044 476 476 1914410 Spiroplasma sp. NBRC 100390 species 1 0 0 species 1 Spiroplasma clarkii 539 2139 Spiroplasma litorale 0 1 species 216942 975 27 5865 33925 1 Entomoplasmataceae 14 family 0 46238 1739 11 genus 5 0 1 Entomoplasma 1 species 0 Entomoplasma freundtii 206 74700 Entomoplasma somnilux 0 1 species 215578 569 214888 356 Entomoplasma luminosum 0 1 species 597 81459 Entomoplasma melaleucae species 1 0 genus 8 0 1 Mesoplasma 4099 46239 95 216427 568 Mesoplasma chauliocola 1 species 0 Mesoplasma syrphidae 0 1 species 225999 417 324078 537 0 species 1 Mesoplasma coleopterae 1025 2151 1 species 0 Mesoplasma florum Mesoplasma entomophilum 0 1 species 2149 568 519 219745 Mesoplasma tabanidae 0 1 species 1 species 0 Mesoplasma lactucae 138853 370 no rank 2 0 713063 1574 751 1911683 Tenericutes bacterium MZ-XQ 0 species 1 species 1 0 Tenericutes bacterium MO-XQ 1911684 823 290 2138240 phylum 4 0 4 class 0 1 Coprothermobacteria 290 2138243 6 2138246 284 2 0 3 order Coprothermobacterales 1 2138247 282 0 2 family 68335 282 2 2 genus 0 1 Coprothermobacter 280 35786 0 species 1 Coprothermobacter proteolyticus 2498710 510 5 clade 0 67814 510 0 5 phylum Caldisericia 1 0 class 5 5 693071 510 0 4 order Caldisericales 1 505 693072 5 693073 500 1 3 family 0 1 Caldisericaceae Caldisericum 1 0 2 genus 1 499 693074 498 693075 Caldisericum exile 1 species 0 Elusimicrobia 1 0 phylum 9 5 1557 74152 435 99260 1 no rank 0 0 1 species uncultured Termite group 1 bacterium 167965 435 826 447830 0 class 5 1783344 826 3 order 5 0 1 Endomicrobiales Endomicrobiaceae 1 0 4 family 4 823 1783343 genus 3 0 1 Endomicrobium 819 1408194 4 1408204 408 0 species 1 Candidatus Endomicrobium trichonymphae 407 1408281 Endomicrobium proavitum species 1 0 2 class 0 641853 291 3 641854 291 1 Elusimicrobiales 2 order 0 288 641876 0 1 family 423604 288 0 1 genus Elusimicrobium minutum species 1 0 423605 288 0 phylum 57 203691 24196 46 203692 24196 1 Spirochaetia class 57 0 33 14708 136 Spirochaetales 1 0 40 order 33 1643685 9945 Borreliaceae 1 0 17 family 1 Borrelia 8 genus 0 146 138 5385 47466 1264 0 species 1 Borrelia miyamotoi Borrelia recurrentis species 1 0 44449 721 538 141 0 1 species Borrelia parkeri 577 142 0 1 species Borrelia turicatae 140 510 Borrelia hermsii species 1 0 520 143 Borrelia anserina 1 species 0 0 1 species Borrelia duttonii 1109 40834 271 64895 4527 Borreliella 1 0 genus 8 Borreliella bissettii 0 species 1 595 64897 457 62088 0 species 1 Borreliella valaisiana 139 586 0 species 1 Borreliella burgdorferi 29518 600 1 species 0 Borreliella afzelii 646 1674146 0 species 1 Borrelia mayonii species 1 0 Borreliella bavariensis 664662 453 29519 919 0 species 1 Borreliella garinii 22 4730 137 Spirochaetaceae 1 0 22 family 1 Sediminispirochaeta 2 genus 0 2 1911556 275 0 species 1 Sediminispirochaeta smaragdinae 55206 273 20 2911 157 Treponema 1 0 12 genus no rank 1 0 2638727 158 158 1539298 Treponema sp. OMZ 838 1 species 0 88058 296 Treponema primitia 0 species 1 371 167 Treponema succinifaciens 0 species 1 1 species 0 Treponema brennaborense 81028 162 359 158 species 1 0 Treponema denticola 0 species 1 Treponema azotonutricium 157 150829 102 160 0 1 species Treponema pallidum 53435 123 Treponema paraluiscuniculi 0 1 species 338 215591 Treponema caldarium 0 1 species 437 409322 Treponema pedis 0 1 species Treponema putidum 1 species 0 388 221027 399320 445 genus 3 0 273376 155 Sphaerochaeta coccoides 1 species 0 147 1131707 Sphaerochaeta pleomorpha 0 species 1 1131703 143 species 1 0 Sphaerochaeta globosa genus 1 0 524 1616789 524 1307761 Salinispira pacifica 0 species 1 Spirochaeta 1 0 3 genus 2 553 146 298 46355 Spirochaeta africana 0 1 species 154 253 Spirochaeta thermophila 1 species 0 7 order 0 1 Brachyspirales 1643686 5722 13 3 5709 143786 1 Brachyspiraceae family 6 0 32 5706 29521 Brachyspira 1 0 genus 5 species 1 0 Brachyspira intermedia 84377 1331 0 1 species Brachyspira pilosicoli 1686 52584 1206 84378 Brachyspira murdochii 0 species 1 1451 159 Brachyspira hyodysenteriae 0 species 1 9 order 0 3720 1643688 1 Leptospiraceae 9 family 0 20 3720 170 216 338321 4 genus 2 0 1 Turneriella 212 29510 0 species 1 Turneriella parva genus 6 0 1 Leptospira 171 3484 11 0 1 species Leptospira interrogans 173 1424 172 714 0 1 species Leptospira biflexa 0 1 species Leptospira borgpetersenii 174 581 Leptospira alstonii 0 species 1 28452 418 336 28183 Leptospira santarosai 0 1 species 57723 2814 0 phylum 19 204432 2483 20 0 17 class Acidobacteriia 1 order 4 0 1 Solibacterales 646 332160 9 1 Solibacteraceae family 3 0 6 332161 637 332162 631 6 0 genus 2 Candidatus Solibacter 1 Candidatus Solibacter usitatus 1 species 0 332163 625 17 204433 1817 Acidobacteriales 1 0 12 order 11 family 0 1 Acidobacteriaceae 1800 204434 13 genus 3 0 1 Terriglobus 536 392733 4 392734 226 species 1 0 Terriglobus roseus species 1 0 Terriglobus saanensis 870903 306 33973 353 3 0 genus 2 Acidobacterium 1 350 33075 species 1 0 Acidobacterium capsulatum 0 2 genus Candidatus Koribacter 1 658061 291 4 287 658062 Candidatus Koribacter versatilis 0 1 species 5 940557 607 Granulicella 1 0 genus 3 Granulicella mallensis 0 1 species 236 940614 366 940615 Granulicella tundricola 0 1 species 0 class 2 1562566 331 1 Chloracidobacterium 2 genus 0 7 458032 331 0 1 species Chloracidobacterium thermophilum 324 458033 10 phylum 0 200940 2876 Thermodesulfobacteria 1 0 class 10 9 67799 2876 188710 2867 16 0 order 9 Thermodesulfobacteriales 1 8 family 0 1 Thermodesulfobacteriaceae 2851 188711 17 1740 2010 3 0 3 genus Thermodesulfobacterium 1 Thermodesulfobacterium geofontis 0 1 species 1460 1295609 0 species 1 Thermodesulfobacterium commune 547 1741 1 382 241192 1 Thermodesulfatator 2 genus 0 171695 381 Thermodesulfatator indicus 1 species 0 Caldimicrobium 1 0 2 genus 2 444090 442 1653476 440 Caldimicrobium thiodismutans 0 species 1 11 phylum 0 508458 936 649775 936 6 0 11 class Synergistia 1 10 order 0 1 Synergistales 930 649776 9 7 921 649777 Synergistaceae 1 0 family 9 0 genus 2 Cloacibacillus 1 213 508459 1 212 1197717 0 species 1 Cloacibacillus porcorum 0 genus 1 49894 187 97477 187 1 species 0 Acetomicrobium mobile 1 81461 115 1 Thermanaerovibrio 2 genus 0 81462 114 Thermanaerovibrio acidaminovorans 1 species 0 204 336260 genus 1 0 Thermovirga lienii 0 1 species 336261 204 1 195 81466 Aminobacterium 1 0 2 genus 0 species 1 Aminobacterium colombiense 194 81468 2323 925 0 no rank 3 0 clade 3 925 1783234 0 1 phylum 95818 136 no rank 1 0 136 1895827 0 1 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 136 2056494 0 clade 2 95901 789 789 2497643 class 2 0 2 order 0 2497644 789 0 2 family 789 2497645 1 Candidatus Babela 2 genus 0 9 1551504 789 780 673862 1 species 0 Candidatus Babela massiliensis 0 phylum 6 68297 1729 Dictyoglomia 1 0 6 class 8 203486 1729 203487 1721 6 5 order 0 1 Dictyoglomales 11 203488 1715 1 Dictyoglomaceae family 4 0 1 Dictyoglomus 3 genus 0 5 13 1704 species 1 0 Dictyoglomus turgidum 513050 919 0 1 species Dictyoglomus thermophilum 14 780 3037 40117 0 phylum 14 20 3037 203693 1 Nitrospira class 14 0 0 13 order Nitrospirales 1 189778 3017 18 13 2999 189779 1 Nitrospiraceae family 12 0 1464 28261 4 genus 2 0 1 Thermodesulfovibrio 1460 28262 species 1 0 Thermodesulfovibrio yellowstonii genus 4 0 1 Leptospirillum 179 581 7 655606 228 species group 1 0 228 180 Leptospirillum ferrooxidans 0 1 species 261386 177 species group 1 0 1 species 0 Leptospirillum ferriphilum 178606 177 species group 1 0 169 261385 1660083 169 1 species 0 Leptospirillum sp. Group II 'CF-1' Nitrospira 1 0 genus 5 6 941 1234 0 1 species Nitrospira japonica 1325564 232 Nitrospira defluvii 0 1 species 330214 197 Candidatus Nitrospira inopinata 0 species 1 1715989 186 1 species 0 Nitrospira moscoviensis 42253 320 1783270 234383 377 clade 0 phylum 5 0 408 65842 204430 408 2 5 class 0 1 Fibrobacteria 406 218872 2 0 order 4 Fibrobacterales 1 2 204431 404 1 Fibrobacteraceae 3 family 0 3 402 832 Fibrobacter 1 0 2 genus Fibrobacter succinogenes 0 species 1 399 833 231580 68336 0 362 clade phylum 21 0 3866 1090 0 class 21 Chlorobia 1 191410 3866 14 20 order 0 1 Chlorobiales 191411 3852 25 Chlorobiaceae 1 0 family 19 38 191412 3827 8 no rank 0 1899 274493 13 464 1099 1 Pelodictyon 3 genus 0 species 1 0 Pelodictyon luteolum 1100 160 species 1 0 Pelodictyon phaeoclathratiforme 34090 291 1 Chlorobium 5 genus 0 29 1091 1435 1 species 0 Chlorobium chlorochromatii 402 337090 1092 216 Chlorobium limicola 0 species 1 0 species 1 Chlorobium phaeovibrioides 143 1094 1096 645 Chlorobium phaeobacteroides species 1 0 800 1101 38 0 genus 5 Prosthecochloris 1 Prosthecochloris aestuarii species 1 0 1102 233 529 2632826 3 no rank 0 Prosthecochloris sp. GSB1 1 species 0 281093 172 188 1974213 1 species 0 Prosthecochloris sp. HL-130-GSB 1868325 169 Prosthecochloris sp. CIB 2401 0 1 species 0 4 genus Chlorobaculum 1 706 256319 47 274537 231 species 1 0 Chlorobaculum limnaeum Chlorobaculum tepidum species 1 0 178 1097 274539 250 Chlorobaculum parvum 0 species 1 genus 1 0 100715 384 384 100716 species 1 0 Chloroherpeton thalassium 0 phylum 334 Bacteroidetes 1 225300 976 26 0 17 class Chitinophagia 1 1853228 4249 10 4239 1853229 20 order 16 0 1 Chitinophagales 563835 4219 43 0 family 15 Chitinophagaceae 1 Filimonas 1 0 2 genus 3 507 649460 Filimonas lacunae 0 1 species 477680 504 Niabella 1 0 genus 3 4 736 379899 0 1 species Niabella soli 446683 338 Niabella ginsenosidivorans 0 1 species 1176587 394 918 79328 2 genus 3 0 1 Chitinophaga 1 species 0 Chitinophaga pinensis 449 79329 Chitinophagaceae bacterium 13 0 1 species 467 2029983 2 620 1769012 1 Arachidicoccus genus 2 0 2636138 618 0 1 no rank 618 1850526 Arachidicoccus sp. BS20 1 species 0 1 Flavisolibacter genus 2 0 4 398041 747 743 1492898 0 1 species Flavisolibacter tropicus 3 354354 648 Niastella 1 0 2 genus 645 354356 Niastella koreensis 0 species 1 49 768503 23442 1 Cytophagia 62 class 0 order 61 0 1 Cytophagales 23393 768507 96 3 family 0 1 Bernardetiaceae 2149 1937968 18 1 Bernardetia 2 genus 0 21 1937972 2131 Bernardetia litoralis 1 species 0 999 2110 4418 1853232 15 16 family 0 1 Hymenobacteraceae 9 323449 742 1 Pontibacter genus 3 0 Pontibacter korlensis species 1 0 415 400092 Pontibacter akesuensis 0 1 species 388950 318 12 1113 1379908 Rufibacter 1 0 4 genus 2639626 661 0 no rank 2 species 1 0 Rufibacter sp. DG15C 322 1379909 Rufibacter sp. DG31D 0 1 species 339 1379910 1 species 0 Rufibacter tibetensis 440 512763 genus 8 0 1 Hymenobacter 89966 2548 24 2615202 1816 0 5 no rank Hymenobacter sp. PAMC 26628 0 species 1 494 1484118 1385664 264 1 species 0 Hymenobacter sp. DG25B 454 1484116 0 species 1 Hymenobacter sp. PAMC 26554 216 1385663 species 1 0 Hymenobacter sp. DG25A Hymenobacter sp. APR13 0 1 species 388 1356852 1411621 384 species 1 0 Hymenobacter sedentarius 1446467 324 Hymenobacter swuensis species 1 0 1 Flammeovirgaceae 4 family 0 7 200667 3930 no rank 1 0 340671 2268 0 species 1 Flammeovirgaceae bacterium 311 1257021 2268 59739 1655 13 2 genus 0 1 Flammeovirga 0 1 no rank 2637820 1642 1191459 1642 Flammeovirga sp. MY04 1 species 0 866 1853234 5 0 3 family Persicobacteraceae 1 1 Persicobacter genus 2 0 9 861 59740 2664020 852 1 no rank 0 1085624 852 Persicobacter sp. JZB09 0 1 species 0 family 2 2762301 1502 0 2 genus Marivirga 1 1502 869806 10 1006 1492 0 1 species Marivirga tractuosa Amoebophilaceae 1 0 5 family 8 1501348 813 Candidatus Cardinium 1 0 2 genus 1 287 273135 2641185 286 no rank 1 0 249402 286 0 species 1 Cardinium endosymbiont of Encarsia pergandiella 281119 518 5 genus 2 0 1 Candidatus Amoebophilus 281120 513 1 species 0 Candidatus Amoebophilus asiaticus 1 Cyclobacteriaceae 10 family 0 21 4936 563798 15 390846 555 Echinicola 1 0 genus 2 Echinicola vietnamensis 0 1 species 540 390884 0 3 genus Cyclobacterium 1 2284 68288 17 Cyclobacterium marinum 0 species 1 104 1138 Cyclobacterium amurskyense 0 species 1 1129 320787 2 748 246875 Algoriphagus 1 0 genus 2 746 1727163 Algoriphagus sp. M8-2 0 1 species 0 2 genus Belliella 1 1328 232244 11 1317 232259 Belliella baltica species 1 0 89373 4683 13 17 family 0 1 Cytophagaceae 595 319458 7 0 2 genus Leadbetterella 1 1 species 0 Leadbetterella byssophila 316068 588 120831 445 6 0 genus 2 Dyadobacter 1 94254 439 1 species 0 Dyadobacter fermentans 31 107 1904 Spirosoma 1 0 6 genus 279 564064 0 species 1 Spirosoma rigui Spirosoma aerolatum species 1 0 1211326 422 2057025 458 Spirosoma sp. HA7 1 species 0 382 1379870 Spirosoma radiotolerans 0 1 species 0 species 1 Spirosoma montaniterrae 332 1178516 904 978 21 2 genus 0 1 Cytophaga 985 883 0 species 1 Cytophaga hutchinsonii 4 278 861914 1 Fibrella 2 genus 0 1 no rank 0 274 2620963 Fibrella sp. ES10-3-2-2 species 1 0 274 1834519 2 105 544 Runella 1 0 2 genus Runella slithyformis 0 species 1 542 106 1193 1937959 2 class 6 0 1 Saprospiria 1191 1936988 3 order 5 0 1 Saprospirales 1 family 0 89374 441 1007 441 0 genus 1 441 1008 Saprospira grandis 1 species 0 747 1937961 1 family 3 0 1 Haliscomenobacteraceae 0 2 genus Haliscomenobacter 1 746 2349 6 740 2350 Haliscomenobacter hydrossis species 1 0 1100069 1608 13 7 order 0 1 Bacteroidetes Order II. Incertae sedis 1595 563843 17 6 family 0 1 Rhodothermaceae 1 433 146918 1 Salinibacter 2 genus 0 146919 432 species 1 0 Salinibacter ruber 5 499 29548 Rhodothermus 1 0 genus 2 29549 494 0 1 species Rhodothermus marinus 1 no rank 0 1196022 646 Rhodothermaceae bacterium RA 1 species 0 1779382 646 Bacteroidia 1 0 class 70 48 200643 16367 12824 171549 63 57 order 0 1 Bacteroidales 0 11 family Bacteroidaceae 1 815 3072 6 0 genus 10 Bacteroides 1 816 3066 52 451 28116 Bacteroides ovatus 0 species 1 657 817 1 species 0 Bacteroides fragilis 1 species 0 Bacteroides heparinolyticus 194 28113 400 818 Bacteroides thetaiotaomicron species 1 0 265 1796613 Bacteroides caecimuris species 1 0 1 species 0 Bacteroides helcogenes 205 290053 28119 168 Bacteroides zoogleoformans 0 1 species 246787 378 species 1 0 Bacteroides cellulosilyticus 0 species 1 Bacteroides caccae 47678 296 0 family 11 Prevotellaceae 1 2668 171552 4 27 2664 838 Prevotella 1 0 10 genus 149 76123 1 species 0 Prevotella enoeca Prevotella denticola 0 species 1 112 28129 Prevotella melaninogenica species 1 0 270 28132 0 species 1 Prevotella intermedia 28131 786 Prevotella ruminicola species 1 0 839 205 0 1 species Prevotella jejuni 217 1177574 1 no rank 0 471 2638335 652716 471 0 species 1 Prevotella sp. oral taxon 299 Prevotella fusca 0 species 1 215 589436 Prevotella dentalis 0 1 species 212 52227 430 171550 7 0 5 family Rikenellaceae 1 203 239759 2 genus 2 0 1 Alistipes 0 1 species Alistipes finegoldii 201 214856 4 220 1611681 1 Mucinivorans 2 genus 0 1433126 216 0 species 1 Mucinivorans hirudinis 185291 279 no rank 1 0 1400053 279 0 1 species Bacteroidales bacterium CF Tannerellaceae 1 0 family 7 3 2005525 904 3 genus 0 1 Tannerella 195950 394 3 0 no rank 1 2620507 152 Tannerella sp. oral taxon HOT-286 species 1 0 712710 152 1 species 0 Tannerella forsythia 28112 239 Parabacteroides 1 0 genus 3 5 375288 507 252 823 Parabacteroides distasonis 0 1 species 250 2649774 0 no rank 1 2025876 250 Parabacteroides sp. CT06 0 species 1 1 2005519 177 1 Barnesiellaceae 3 family 0 genus 2 0 1 Barnesiella 397864 176 1 397865 175 1 species 0 Barnesiella viscericola 3 507 171551 Porphyromonadaceae 1 0 4 family 1 Porphyromonas 3 genus 0 12 836 504 1 species 0 Porphyromonas gingivalis 347 837 28123 145 Porphyromonas asaccharolytica 1 species 0 0 family 5 1260 2005520 294702 325 2 0 genus 2 Proteiniphilum 1 1642647 323 species 1 0 Proteiniphilum saccharofermentans 221 307628 genus 1 0 0 1 species Petrimonas mucosa 1642646 221 2 genus 0 1 Fermentimonas 1784836 714 1 1562970 713 Fermentimonas caenicola 0 1 species 1 342 1853231 1 Odoribacteraceae family 2 0 283168 341 1 genus 0 341 28118 species 1 0 Odoribacter splanchnicus 0 2 family 725 2005523 Paludibacter 1 0 genus 2 2 725 346096 723 185300 0 species 1 Paludibacter propionicigenes 333046 2397 0 5 no rank 3 511434 1310 Candidatus Azobacteroides 1 0 2 genus species 1 0 Candidatus Azobacteroides pseudotrichonymphae 1307 511435 3 genus 0 909656 1087 821 320 0 1 species Bacteroides vulgatus Bacteroides salanitronis species 1 0 376805 380 387 357276 0 species 1 Bacteroides dorei 1 Marinilabiliales 12 order 0 10 1970189 3495 1 Salinivirgaceae 3 family 0 12 772 1970190 760 1970191 1 0 genus 2 Salinivirga 1 1307839 759 0 1 species Salinivirga cyanobacteriivorans 1 Marinifilaceae family 2 0 1 1573805 1242 0 genus 1 1241 2060722 Marinifilaceae bacterium SPP2 species 1 0 1717717 1241 3 778 1471398 1 Prolixibacteraceae family 3 0 1 Draconibacterium 2 genus 0 3 1471399 775 1168034 772 Draconibacterium orientale 0 1 species 693 558415 5 0 3 family Marinilabiliaceae 1 0 genus 2 Alkalitalea 1 1193324 688 1 0 1 species Alkalitalea saponilacus 687 889453 0 class 147 Flavobacteriia 1 164514 117743 112 Flavobacteriales 1 0 146 order 168 200644 164402 1853230 1203 1 3 family 0 1 Crocinitomicaceae 2 genus 0 1 Fluviicola 332102 1202 9 191579 1193 Fluviicola taffensis 0 1 species no rank 3 0 2091 313602 1 genus 0 1940138 370 Candidatus Walczuchella monophlebidarum 0 1 species 1415657 370 0 2 genus Candidatus Sulcia 1 1721 336809 3 Candidatus Sulcia muelleri 0 species 1 336810 1718 18381 2762318 0 20 family 1693 34084 1 genus 0 Riemerella anatipestifer 0 1 species 34085 1693 2 genus 0 1 Ornithobacterium 758 28250 1 species 1 0 Ornithobacterium rhinotracheale 757 28251 6019 308865 54 0 6 genus Elizabethkingia 1 species 1 0 Elizabethkingia anophelis 2089 1117645 Elizabethkingia meningoseptica species 1 0 238 830 947 1756149 Elizabethkingia genomosp. 3 0 1 species 172045 1282 0 1 species Elizabethkingia miricola 1756150 817 0 species 1 Elizabethkingia genomosp. 4 0 10 no rank 2782232 9074 2782228 419 1 genus 0 536441 419 0 species 1 Chryseobacterium taklimakanense 8655 59732 58 9 genus 0 1 Chryseobacterium 793 1324352 species 1 0 Chryseobacterium gallinarum 1685010 1518 Chryseobacterium glaciei 1 species 0 378 1265445 Chryseobacterium camelliae 0 1 species 2593645 3086 0 3 no rank 0 1 species Chryseobacterium sp. T16E-39 1134 2015076 1721091 817 Chryseobacterium sp. IHB B 17019 0 1 species 1 species 0 Chryseobacterium sp. StRB126 1135 878220 Chryseobacterium piperi 1 species 0 1078 558152 1744 253 0 species 1 Chryseobacterium indologenes 0 1 genus 837 1013 0 species 1 Weeksella virosa 837 1014 0 family 103 Flavobacteriaceae 1 133527 49546 626 0 3 genus Formosa 1 225842 3179 15 2644710 3164 no rank 2 0 1336794 1374 0 1 species Formosa sp. Hel1_33_131 1 species 0 Formosa sp. Hel3_A1_48 1336795 1790 1638 417127 0 1 genus 398743 1638 Zunongwangia profunda 1 species 0 15703 237 27 0 9 genus Flavobacterium 1 0 1 species Flavobacterium crassostreae 1763534 903 2225 312277 species 1 0 Flavobacterium indicum 0 species 1 Flavobacterium psychrophilum 1554 96345 0 species 1 Flavobacterium gilvum 1473 1492737 55197 1444 Flavobacterium branchiophilum 0 species 1 0 1 species Flavobacterium columnare 996 3093 986 3579 Flavobacterium johnsoniae 0 species 1 1405 1306519 Flavobacterium commune 0 species 1 941 389486 genus 1 0 2648869 941 0 no rank 1 Sediminicola sp. YIK13 0 1 species 1453352 941 1 Nonlabens 5 genus 0 164 363408 6014 2840 2615035 no rank 2 0 1476901 1610 Nonlabens sp. MIC269 species 1 0 2058134 1230 0 species 1 Nonlabens sp. MB-3u-79 1571 319236 0 1 species Nonlabens sediminis 0 species 1 Nonlabens dokdonensis 328515 1439 52959 14749 100 genus 6 0 1 Polaribacter 0 3 no rank 7914 196858 Polaribacter sp. MED152 species 1 0 313598 2969 0 1 species Polaribacter sp. BM10 2614 1529069 2058137 2331 0 1 species Polaribacter sp. ALD11 3400 996801 1 species 0 Polaribacter reichenbachii 3335 1774273 1 species 0 Polaribacter vadi 3 genus 0 1 Muricauda 111500 1473 6 Muricauda lutaonensis 0 species 1 567 516051 111501 900 Muricauda ruestringensis 0 species 1 0 genus 1 2698 261827 1736674 2698 1 species 0 Algibacter alginicilyticus 1 genus 0 1518147 2120 Wenyingzhuangia fucanilytica species 1 0 2120 1790137 28 326319 4066 Dokdonia 1 0 genus 4 2 no rank 0 2615033 2606 313590 1296 Dokdonia sp. MED134 1 species 0 983548 1310 0 1 species Dokdonia sp. 4H-3-7-5 0 1 species Dokdonia donghaensis 326320 1432 178469 1115 1 genus 0 0 species 1 Arenibacter algicola 1115 616991 2 1209327 1969 1 Flavivirga genus 2 0 species 1 0 Flavivirga eckloniae 1803846 1967 97 4027 76831 1 Myroides genus 5 0 1 species 0 Myroides profundi 955 480520 76832 1058 Myroides odoratimimus species 1 0 2 no rank 0 2642485 1917 Myroides sp. ZB35 0 1 species 1458492 960 957 1583100 Myroides sp. A21 species 1 0 59 6297 252356 Maribacter 1 0 genus 5 2615042 5313 0 no rank 3 species 1 0 Maribacter sp. 1_2014MBL_MicDiv 1644130 1935 1516 313603 Maribacter sp. HTCC2170 0 species 1 1836467 1862 1 species 0 Maribacter sp. T28 Maribacter cobaltidurans 0 species 1 1178778 925 genus 1 0 3444 2700084 1 species 0 Lutibacter sp. LPB0138 1850246 3444 1 genus 0 2000 336276 2000 2615019 0 1 no rank 2000 2058135 Olleya sp. Bg11-27 species 1 0 1176327 704 1 genus 0 1 no rank 0 704 2636237 704 2094025 Aureitalea sp. RR4-38 0 species 1 4585 286104 15 3 genus 0 1 Winogradskyella 0 no rank 2 2615021 4570 2718 754409 1 species 0 Winogradskyella sp. PG-2 1936080 1852 Winogradskyella sp. J14-2 0 1 species 80 8699 1016 1 Capnocytophaga genus 15 0 Capnocytophaga ochracea 0 1 species 359 1018 28188 1067 0 1 species Capnocytophaga canimorsus 744 1848904 species 1 0 Capnocytophaga stomatis 433 327575 species 1 0 Capnocytophaga leadbetteri species 1 0 Capnocytophaga gingivalis 465 1017 3289 2640652 no rank 6 0 359 1705617 Capnocytophaga sp. oral taxon 323 species 1 0 Capnocytophaga sp. oral taxon 878 0 1 species 1316596 611 437 1316593 1 species 0 Capnocytophaga sp. oral taxon 864 1945658 691 Capnocytophaga sp. H4358 1 species 0 Capnocytophaga sp. ChDC OS43 species 1 0 495 209053 1945657 696 0 1 species Capnocytophaga sp. H2931 Capnocytophaga haemolytica 0 species 1 329 45243 Capnocytophaga cynodegmi species 1 0 888 28189 1019 1045 Capnocytophaga sputigena 0 1 species 1 Croceibacter genus 2 0 1 216431 1849 1848 313588 1 species 0 Croceibacter atlanticus 252306 333 1 genus 0 252307 333 Robiginitalea biformata 0 species 1 143222 1379 0 1 genus 2633436 1379 0 no rank 1 Salegentibacter sp. T436 1 species 0 1379 1729720 104267 9992 44 0 5 genus Tenacibaculum 1 Tenacibaculum jejuense species 1 0 3211 584609 2771 1850252 Tenacibaculum todarodis 0 species 1 species 1 0 Tenacibaculum dicentrarchi 2000 669041 1966 107401 0 species 1 Tenacibaculum maritimum 1 Psychroflexus genus 2 0 1 1642 83612 Psychroflexus torquis 0 1 species 57029 1641 1 genus 0 393005 1584 Tamlana sp. UJ94 1 species 0 2069432 1584 0 genus 4 Cellulophaga 1 7328 104264 25 2315 59600 Cellulophaga algicola 0 species 1 Cellulophaga baltica 0 1 species 2403 76594 979 2585 species 1 0 Cellulophaga lytica Zobellia 1 0 genus 2 1 678 112040 677 63186 Zobellia galactanivorans species 1 0 2 genus 0 1 Lutibacter 2931 358023 11 2920 1622118 0 1 species Lutibacter profundi 0 1 genus 2553 1649495 2553 2622645 no rank 1 0 1936081 2553 Seonamhaeicola sp. S2-3 0 1 species 0 2 no rank 61432 2640 1150389 2206 1 species 0 Flavobacteriaceae bacterium UJ101 1 species 0 Flavobacteriaceae bacterium 3519-10 434 531844 1204360 1979 1 genus 0 0 1 species Siansivirga zeaxanthinifaciens 1979 762954 Lacinutrix 1 0 genus 4 41 7458 291183 2647285 4997 0 2 no rank species 1 0 Lacinutrix sp. Bg11-31 2057808 2449 983544 2548 species 1 0 Lacinutrix sp. 5H-3-7-4 1486034 2420 Lacinutrix venerupis 0 species 1 20 3869 292691 Gramella 1 0 genus 5 Gramella flava species 1 0 688 1486245 1037 1913577 0 1 species Gramella sp. LPB0144 2126553 860 0 1 species Gramella sp. SH35 1 species 0 Gramella forsetii 1264 411153 1265 153265 1 genus 0 Aequorivita sublithincola 0 species 1 101385 1265 0 family 2 970 1333713 Owenweeksia 1 0 genus 2 30 267986 970 940 253245 0 1 species Owenweeksia hongkongensis 1 Blattabacteriaceae 10 family 0 13 7085 39782 34098 7072 69 0 9 genus Blattabacterium 1 899 164514 Blattabacterium punctulatus 1 species 0 no rank 6 0 2647581 5146 species 1 0 Blattabacterium sp. (Mastotermes darwiniensis) 743 39768 900 1316444 0 species 1 Blattabacterium sp. (Nauphoeta cinerea) Blattabacterium sp. (Blattella germanica) 0 species 1 862 624186 species 1 0 Blattabacterium sp. (Periplaneta americana) 367488 821 1043 1186051 species 1 0 Blattabacterium sp. (Blaberus giganteus) 367806 777 Blattabacterium sp. (Blatta orientalis) species 1 0 958 1653831 1 species 0 Blattabacterium cuenoti 246874 4 0 family 1 Cryomorphaceae 1 Ichthyobacteriaceae family 3 0 6 1755828 973 1 Ichthyobacterium genus 2 0 16 1755829 967 species 1 0 Ichthyobacterium seriolicida 242600 951 Sphingobacteriia 1 0 class 24 20 13901 117747 21 200666 13881 Sphingobacteriales 1 0 23 order 45 13860 84566 Sphingobacteriaceae 1 0 family 22 0 no rank 1 84568 1377 1377 1986952 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 1 0 3759 28453 45 6 genus 0 1 Sphingobacterium 657 1010 0 1 species Sphingobacterium mizutaii no rank 4 0 3057 2609468 764 2003121 0 1 species Sphingobacterium sp. G1-14 Sphingobacterium sp. B29 0 species 1 739 1933220 Sphingobacterium sp. 21 0 1 species 743722 612 1538644 942 0 species 1 Sphingobacterium sp. ML3W genus 6 0 1 Pedobacter 84567 4511 37 Pedobacter heparinus 0 species 1 984 626 2628915 932 0 no rank 1 932 1727164 0 species 1 Pedobacter sp. PACM 27299 0 species 1 Pedobacter steynii 781 430522 188932 1079 0 species 1 Pedobacter cryoconitis 363852 1056 Pedobacter ginsengisoli 0 1 species 4 929509 1127 1 Solitalea genus 2 0 0 species 1 Solitalea canadensis 995 1123 21 1887 423349 Mucilaginibacter 1 0 genus 4 species 1 0 Mucilaginibacter sp. BJC16-A31 1234841 629 Mucilaginibacter gotjawali 0 1 species 753 1550579 no rank 1 0 2617802 484 484 1300914 Mucilaginibacter sp. PAMC 26640 1 species 0 genus 2 0 1 Pseudopedobacter 1649482 1154 5 Pseudopedobacter saltans species 1 0 151895 1149 0 7 phylum 2414 1134404 0 class 7 Ignavibacteria 1 2414 795747 6 9 2408 795748 Ignavibacteriales 1 0 order 6 0 family 3 Ignavibacteriaceae 1 1937 795749 5 1 Ignavibacterium 2 genus 0 7 795750 1932 591197 1925 Ignavibacterium album 0 species 1 0 family 2 1334117 462 2 462 1134403 Melioribacter 1 0 2 genus 460 1134405 Melioribacter roseus 1 species 0 8 phylum 0 1962 142182 219685 1962 9 0 class 8 Gemmatimonadetes 1 0 order 7 Gemmatimonadales 1 1953 219686 19 13 219687 1934 1 Gemmatimonadaceae family 6 0 0 2 genus Gemmatirosa 1 1160 1706036 8 species 1 0 Gemmatirosa kalamazoonesis 861299 1152 1 Gemmatimonas 3 genus 0 9 761 173479 1379270 351 Gemmatimonas phototrophica 0 species 1 0 1 species Gemmatimonas aurantiaca 401 173480 0 phylum 2 456828 433 1 Candidatus Cloacimonas 2 genus 0 1 456826 433 0 1 species Candidatus Cloacimonas acidaminovorans 432 456827 325 200938 5 phylum 0 1 Chrysiogenetes 5 class 0 1 325 118001 Chrysiogenales 1 0 4 order 3 189769 324 0 family 3 Chrysiogenaceae 1 321 189770 1 320 393029 8 0 2 genus Desulfurispirillum 1 936456 312 Desulfurispirillum indicum species 1 0 7628 200783 0 29 phylum 0 class 29 Aquificae 1 187857 7628 20 4 1166 1485951 Desulfurobacteriales 1 0 6 order 558314 1162 10 5 family 0 1 Desulfurobacteriaceae 1 Desulfurobacterium genus 2 0 4 1010 64159 1006 64160 0 1 species Desulfurobacterium thermolithotrophum 2 genus 0 1 Thermovibrio 142 171868 1 Thermovibrio ammonificans 0 species 1 141 228745 17 32069 6442 Aquificales 1 0 22 order 1 3142 64898 1 Aquificaceae 13 family 0 2 255 75905 Thermocrinis 1 0 genus 3 125 136094 species 1 0 Thermocrinis albus 75906 128 Thermocrinis ruber species 1 0 0 1 genus 2713 127 Aquifex aeolicus 0 species 1 63363 127 179 939 1 genus 2 0 1 Hydrogenobacter 178 940 0 species 1 Hydrogenobacter thermophilus genus 6 0 1 Hydrogenobaculum 168657 2580 92 2488 2622382 5 no rank 0 502 547144 0 1 species Hydrogenobaculum sp. HO 547145 502 Hydrogenobaculum sp. SHO 1 species 0 Hydrogenobaculum sp. 3684 1 species 0 547143 503 547146 502 1 species 0 Hydrogenobaculum sp. SN Hydrogenobaculum sp. Y04AAS1 species 1 0 380749 479 0 family 6 Hydrogenothermaceae 1 2952 224027 9 212790 2288 20 genus 3 0 1 Sulfurihydrogenibium 2619248 1188 0 1 no rank Sulfurihydrogenibium sp. YO3AOP1 1 species 0 1188 436114 Sulfurihydrogenibium azorense 0 1 species 1080 309806 Persephonella 1 0 2 genus 5 655 182899 Persephonella marina 0 1 species 650 309805 90150 331 0 no rank 2 412592 331 2 2 genus 0 1 Thermosulfidibacter 329 412593 species 1 0 Thermosulfidibacter takaii 97 clade 0 18961 1783257 134625 386 5 phylum 0 Kiritimatiellae 1 0 5 class 2 386 1921781 384 1921782 7 0 order 4 Kiritimatiellales 1 0 3 family Kiritimatiellaceae 1 1921783 377 9 0 genus 2 Kiritimatiella 1 1921784 368 3 1 species 0 Kiritimatiella glycovorans 1307763 365 3 74201 4699 1 Verrucomicrobia phylum 27 0 5 class 0 1 Verrucomicrobiae 570 203494 7 48461 563 10 4 order 0 1 Verrucomicrobiales 553 1647988 0 family 3 Akkermansia 1 0 3 genus 6 553 239934 1679444 289 Akkermansia glycaniphila 1 species 0 258 239935 0 1 species Akkermansia muciniphila 1 Opitutae 11 class 0 7 414999 2355 7 623 415001 1 Puniceicoccales 4 order 0 1 Puniceicoccaceae family 3 0 2 616 415002 442430 614 3 0 genus 2 Coraliomargarita 1 611 395922 species 1 0 Coraliomargarita akajimensis 0 order 6 Opitutales 1 1725 415000 11 Opitutaceae 1 0 5 family 8 1714 134623 no rank 1 0 665 278955 species 1 0 Opitutaceae bacterium TAV5 794903 665 0 genus 1 497 1961799 497 1838286 0 1 species Lacunisphaera limnophila 544 178440 2 0 genus 2 Opitutus 1 species 1 0 Opitutus terrae 107709 542 0 class 2 134549 151 151 134550 5 genus 2 0 1 Candidatus Xiphinematobacter 1 no rank 0 146 2648876 1704307 146 species 1 0 Candidatus Xiphinematobacter sp. Idaho Grape Methylacidiphilae 1 0 6 class 1 807 1955630 1 Methylacidiphilales 5 order 0 2 717963 806 804 717964 2 4 family 0 1 Methylacidiphilaceae Methylacidiphilum 1 0 3 genus 4 511745 802 Methylacidiphilum fumariolicum 0 species 1 591154 486 0 species 1 Methylacidiphilum infernorum 312 511746 417295 813 0 2 no rank 2026799 467 1 species 0 Verrucomicrobia bacterium 0 species 1 Verrucomicrobia bacterium IMCC26134 346 1637999 26 phylum 0 204428 4266 26 class 0 1 Chlamydiia 204429 4266 10 order 14 0 1 Chlamydiales 51291 2973 8 1 Chlamydiaceae 13 family 0 10 2965 809 0 no rank 12 1113537 2955 1 Chlamydia genus 12 0 33 810 2955 Chlamydia gallinacea 0 species 1 253 1457153 species 1 0 Chlamydia suis 83559 155 83554 350 Chlamydia psittaci 1 species 0 83558 359 Chlamydia pneumoniae 0 1 species 1 species 0 Chlamydia trachomatis 235 813 Chlamydia muridarum 1 species 0 83560 192 Chlamydia felis 1 species 0 83556 327 Chlamydia abortus 0 1 species 237 83555 0 species 1 Chlamydia caviae 83557 258 1457141 271 Chlamydia avium 0 1 species 85991 285 1 species 0 Chlamydia pecorum 3 1963360 1283 Parachlamydiales 1 0 order 11 0 family 2 92712 296 1 Simkania 2 genus 0 1 296 34093 Simkania negevensis species 1 0 295 83561 Parachlamydiaceae 1 0 family 5 1 92713 771 2 299 282132 Candidatus Protochlamydia 1 0 genus 2 Candidatus Protochlamydia naegleriophila 0 1 species 389348 297 471 83551 3 0 genus 2 Parachlamydia 1 83552 468 0 1 species Parachlamydia acanthamoebae 92714 213 1 0 3 family Waddliaceae 1 1 Waddlia genus 2 0 1 212 71666 Waddlia chondrophila 1 species 0 71667 211 phylum 36 0 9228 203682 666505 1332 9 7 class 0 1 Phycisphaerae 2483366 437 0 2 order 2483367 437 0 family 2 2483368 437 genus 2 0 Phycisphaerae bacterium L21-RPul-D3 0 species 1 217 1940790 1 species 0 Phycisphaerae bacterium ST-PulAB-D4 1941349 220 order 4 0 1 Phycisphaerales 886 666506 5 881 666507 2 0 3 family Phycisphaeraceae 1 879 666508 14 0 2 genus Phycisphaera 1 547188 865 0 species 1 Phycisphaera mikurensis 1216 2517206 0 3 class order 3 0 1 Candidatus Brocadiales 1127829 1216 13 1 1203 1127830 1 Candidatus Brocadiaceae 2 family 0 1 genus 0 1202 380738 species 1 0 Candidatus Kuenenia stuttgartiensis 174633 1202 15 203683 6680 1 Planctomycetia class 26 0 2691354 1132 0 5 order 2691358 226 0 family 1 1 genus 0 226 1676125 0 species 1 Thermogutta terrifontis 1331910 226 family 4 0 2691357 906 265488 455 1 genus 2 0 1 Rhodopirellula Rhodopirellula baltica 1 species 0 265606 454 1 451 123 1 Pirellula genus 2 0 Pirellula staleyi 1 species 0 125 450 640 2691355 0 order 3 Gemmataceae 1 0 3 family 2 640 1914233 1 Gemmata 2 genus 0 12 113 638 2622970 626 0 no rank 1 Gemmata sp. SH-PL17 0 species 1 626 1630693 2998 112 62 10 order 0 1 Planctomycetales 126 2936 26 0 family 9 Planctomycetaceae 1 1 genus 0 1649480 299 299 120 Planctopirus limnophila 1 species 0 9 1610 118 Planctomyces 1 0 genus 3 1601 2648843 no rank 2 0 878 1636152 species 1 0 Planctomyces sp. SH-PL62 Planctomyces sp. SH-PL14 species 1 0 1632864 723 Rubinisphaera 1 0 2 genus 1 477 1649490 476 119 Rubinisphaera brasiliensis 0 1 species 0 genus 2 Fuerstia 1 524 1936111 2 1891926 522 0 species 1 Fuerstia marisgermanicae 2691356 1895 0 7 order 7 1763524 1895 1 Isosphaeraceae family 7 0 8 127 427 Isosphaera 1 0 genus 2 128 419 species 1 0 Isosphaera pallida 1 Singulisphaera genus 2 0 12 627 466152 0 species 1 Singulisphaera acidiphila 466153 615 Paludisphaera 1 0 2 genus 3 834 1763521 Paludisphaera borealis 0 1 species 831 1387353 256845 382 0 3 phylum 1313211 382 3 0 3 class Lentisphaeria 1 Victivallales 1 0 order 2 8 379 278082 1674876 371 1 no rank 0 Victivallales bacterium CCUG 44730 0 species 1 2094242 371 2047 phylum 0 1 Proteobacteria 1226511 1224 276 68525 103108 197 subphylum 0 58 28221 46117 Deltaproteobacteria 1 0 class 125 40 5066 213118 Desulfobacterales 1 0 18 order Desulfobacteraceae 1 0 10 family 19 3439 213119 1 Desulfobacterium genus 2 0 10 2295 367 0 species 1 Desulfobacterium autotrophicum 357 2296 2 896 720 Desulfococcus 1 0 3 genus species 1 0 Desulfococcus multivorans 897 323 1 species 0 Desulfococcus oleovorans 395 181663 1 Desulfatibacillum 2 genus 0 10 1401 218207 259354 1391 Desulfatibacillum alkenivorans 0 1 species 3 28222 932 1 Desulfobacula 2 genus 0 929 28223 0 1 species Desulfobacula toluolica Desulfobulbaceae 1 0 family 7 14 1587 213121 Desulfotalea 1 0 genus 2 20 109168 520 1 species 0 Desulfotalea psychrophila 500 84980 0 genus 2 Desulfobulbus 1 289 893 6 Desulfobulbus sp. ORNL 1 species 0 1986146 283 0 1 genus 427922 247 247 427923 0 species 1 Desulfurivibrio alkaliphilus 1 genus 0 53318 517 517 65555 0 1 species Desulfocapsa sulfexigens 213113 1890 order 5 0 0 family 5 Desulfurellaceae 1 117942 1890 6 1 Desulfurella 2 genus 0 3 33001 1307 1 species 0 Desulfurella acetivorans 1304 33002 0 2 genus Hippea 1 84404 577 2 0 species 1 Hippea maritima 84405 575 0 24 order Desulfuromonadales 1 69541 6524 51 31 4272 213422 Geobacteraceae 1 0 14 family Geoalkalibacter 1 0 genus 2 17 331 392332 Geoalkalibacter subterraneus species 1 0 314 483547 Geobacter 1 0 11 genus 86 28231 3910 35554 290 species 1 0 Geobacter sulfurreducens species 1 0 Geobacter bemidjiensis 225194 367 1340425 304 species 1 0 Geobacter anodireducens species 1 0 Geobacter pickeringii 345632 336 species 1 0 Geobacter lovleyi 313985 262 28232 443 Geobacter metallireducens 0 1 species 873 2627627 no rank 2 0 443143 523 0 species 1 Geobacter sp. M18 443144 350 1 species 0 Geobacter sp. M21 711 351604 1 species 0 Geobacter uraniireducens species 1 0 Geobacter daltonii 1203471 238 213421 2201 15 0 family 9 Desulfuromonadaceae 1 15 890 996 Desulfuromonas 1 0 3 genus 1603606 552 species 1 0 Desulfuromonas soudanensis 0 no rank 1 2614637 429 1823759 429 Desulfuromonas sp. DDH964 1 species 0 Pelobacter 1 0 genus 5 27 18 1190 291 2620299 0 no rank 1 1842532 291 Pelobacter sp. SFB93 0 1 species 29543 285 0 1 species Pelobacter propionicus 1 species 0 Pelobacter acetylenicus 29542 290 19 297 Pelobacter carbinolicus species 1 0 Desulfarculales 1 0 order 4 3 453227 399 family 3 0 1 Desulfarculaceae 396 453228 5 1 Desulfarculus 2 genus 0 3 453229 391 Desulfarculus baarsii 0 1 species 453230 388 1 Syntrophobacterales 10 order 0 14 213462 1066 0 6 family Syntrophaceae 1 213468 822 12 5 43773 265 1 Syntrophus genus 2 0 0 species 1 Syntrophus aciditrophicus 316277 260 1 genus 0 60892 260 260 60893 1 species 0 Desulfobacca acetoxidans 5 285 2357 Desulfomonile 1 0 genus 2 0 species 1 Desulfomonile tiedjei 280 2358 1 Syntrophobacteraceae 3 family 0 2 213465 230 1 Syntrophobacter 2 genus 0 6 228 29526 1 species 0 Syntrophobacter fumaroxidans 222 119484 25031 29 191 0 order 38 Myxococcales 1 8596 80812 0 suborder 8 Polyangiaceae 1 0 5 family 16 49 6549 5194 39643 12 0 genus 2 Sorangium 1 Sorangium cellulosum 0 species 1 56 5182 0 2 genus Chondromyces 1 1339 50 1 52 1338 1 species 0 Chondromyces crocatus 1 Sandaracinaceae family 3 0 9 1055686 2047 2 genus 0 1 Sandaracinus 2038 1055688 4 0 1 species Sandaracinus amylolyticus 927083 2034 224462 2094 0 suborder 3 9 2094 224464 Kofleriaceae 1 0 3 family 18 2085 162027 1 Haliangium 2 genus 0 80816 2067 Haliangium ochraceum 0 1 species suborder 26 0 80811 14150 Vulgatibacteraceae 1 0 3 family 12 663 1524213 6 1524214 651 Vulgatibacter 1 0 2 genus 645 1391653 species 1 0 Vulgatibacter incomptus Myxococcaceae 1 0 9 family 23 6280 31 4285 32 131 0 genus 5 Myxococcus 1 species 1 0 Myxococcus xanthus 710 34 814 83455 Myxococcus stipitatus 1 species 0 Myxococcus hansupus 0 1 species 826 1297742 1804 33 0 1 species Myxococcus fulvus 0 3 genus Corallococcus 1 1972 83461 41 Myxococcus macrosporus 0 species 1 904 35 Corallococcus coralloides 1 species 0 184914 1027 11 1524215 2879 1 Anaeromyxobacteraceae family 5 0 2868 161492 57 0 4 genus Anaeromyxobacter 1 161493 1243 0 species 1 Anaeromyxobacter dehalogenans 1568 2620896 2 no rank 0 0 1 species Anaeromyxobacter sp. K 725 447217 404589 843 Anaeromyxobacter sp. Fw109-5 1 species 0 39 4328 60 0 family 9 Archangiaceae 1 Cystobacter 1 0 genus 2 7 1096 42 1089 43 Cystobacter fuscus 1 species 0 2 genus 0 1 Archangium 47 1638 6 1632 48 species 1 0 Archangium gephyra 4 785 44 Melittangium 1 0 2 genus 0 1 species Melittangium boletus 83453 781 749 40 6 genus 2 0 1 Stigmatella 41 743 Stigmatella aurantiaca 1 species 0 Desulfovibrionales 1 0 25 order 52 6083 213115 0 18 family Desulfovibrionaceae 1 5337 194924 49 449 2794998 0 genus 1 Desulfovibrio salexigens 0 1 species 449 880 1 1123 41707 Lawsonia 1 0 genus 2 Lawsonia intracellularis 0 species 1 1122 29546 0 genus 1 312 2582840 1 species 0 Desulfovibrio africanus 312 873 1 Desulfovibrio 9 genus 0 30 2536 872 Desulfovibrio alaskensis 1 species 0 258 58180 876 446 Desulfovibrio desulfuricans 0 species 1 881 707 0 species 1 Desulfovibrio vulgaris 184917 472 Desulfovibrio magneticus 1 species 0 2593640 149 0 no rank 1 631220 149 Desulfovibrio sp. G11 1 species 0 Desulfovibrio piger 0 species 1 177 901 Candidatus Desulfovibrio trichonymphae species 1 0 1725232 114 Desulfovibrio fairfieldensis 1 species 0 44742 183 11 868 2035811 1 Pseudodesulfovibrio 4 genus 0 Pseudodesulfovibrio profundus 0 1 species 220 57320 1716143 328 Pseudodesulfovibrio indicus 1 species 0 182210 309 0 species 1 Pseudodesulfovibrio aespoeensis 0 family 2 219 213117 5 219 45662 Desulfohalobium 1 0 genus 2 214 45663 0 1 species Desulfohalobium retbaense family 4 0 1 Desulfomicrobiaceae 475 213116 2 898 473 5 0 genus 3 Desulfomicrobium 1 species 1 0 Desulfomicrobium orale 174 132132 294 899 1 species 0 Desulfomicrobium baculatum class 72 0 1 Epsilonproteobacteria 56991 29547 55 5 235899 1319 Nautiliales 1 0 order 6 5 945 224467 1 Nautiliaceae 3 family 0 1 940 191291 Nautilia 1 0 2 genus 1 species 0 Nautilia profundicola 939 244787 family 2 0 369 2795691 0 genus 2 Nitratiruptor 1 369 269258 1 368 2624044 0 1 no rank 368 387092 Nitratiruptor sp. SB155-2 1 species 0 Campylobacterales 1 0 order 65 111 213849 55617 72293 6901 11 0 family 14 Helicobacteraceae 1 12 genus 0 1 Helicobacter 6714 209 31 Helicobacter himalayensis species 1 0 1591088 262 Helicobacter felis species 1 0 214 157 37372 478 Helicobacter bilis 1 species 0 138563 808 Helicobacter cetorum 0 species 1 1 species 0 Helicobacter mustelae 217 289 Helicobacter typhlonius species 1 0 76936 398 212 249 Helicobacter acinonychis 0 1 species Helicobacter cinaedi species 1 0 213 419 543 32025 0 species 1 Helicobacter hepaticus 1 no rank 0 2593540 319 222136 319 Helicobacter sp. MIT 01-6242 1 species 0 Helicobacter pylori 0 1 species 210 2761 176 843 0 genus 1 1 species 0 Wolinella succinogenes 176 844 2771472 936 0 5 family 13 265570 653 1 Sulfurovum genus 3 0 206403 321 0 1 species Sulfurovum lithotrophicum 0 no rank 1 2646778 319 Sulfurovum sp. NBC37-1 species 1 0 319 387093 3 283 269260 Nitratifractor 1 0 genus 2 0 species 1 Nitratifractor salsuginis 269261 280 1 Campylobacteraceae 41 family 0 105 72294 45905 Campylobacter 1 0 26 genus 230 194 29195 488546 1204 Campylobacter peloridis 0 species 1 1 species 0 Campylobacter curvus 200 178 374106 913 0 species 1 Campylobacter cuniculorum 499 75658 species 1 0 Campylobacter lanienae Campylobacter gracilis 0 species 1 824 166 species 1 0 Campylobacter insulaenigrae 260714 1411 Campylobacter hominis 1 species 0 76517 683 497724 1327 Campylobacter subantarcticus 1 species 0 species 1 0 Campylobacter hyointestinalis 866 198 Campylobacter concisus 0 species 1 199 739 1116 196 Campylobacter fetus 0 species 1 2027 206 Campylobacter sputorum 1 species 0 1031542 1225 species 1 0 Campylobacter volucris 1 species 0 Campylobacter ureolyticus 1368 827 683 522485 Campylobacter avium species 1 0 no rank 4 0 3748 2593542 Campylobacter sp. RM8964 0 1 species 919 1660074 Campylobacter sp. RM6137 0 1 species 558 1660073 874 1660076 Campylobacter sp. RM12175 1 species 0 species 1 0 Campylobacter sp. RM16704 1397 1500960 1 species 0 Campylobacter iguaniorum 669 1244531 28898 577 Campylobacter helveticus 0 species 1 1965231 1641 0 1 species Campylobacter pinnipediorum 197 2526 Campylobacter jejuni species 1 0 Campylobacter coli 0 1 species 195 1922 species 1 0 Campylobacter lari 3477 201 12721 2321108 no rank 5 0 0 1 no rank 2321207 2990 Arcobacter sp. L 0 species 1 944547 2990 53 6722 28196 Arcobacter 1 0 3 genus 2723 28199 Arcobacter nitrofigilis 0 1 species 28197 3946 Arcobacter butzleri 1 species 0 2321187 3009 1 genus 0 3009 1850254 Arcobacter sp. LPB0137 0 species 1 54 57665 3884 1 Sulfurospirillum genus 9 0 Sulfurospirillum cavolei 0 1 species 366522 271 species 1 0 Sulfurospirillum halorespirans 194424 362 Sulfurospirillum multivorans species 1 0 391 66821 no rank 3 0 2618290 1841 Sulfurospirillum sp. SL2-1 1 species 0 552 1986224 563 220622 Sulfurospirillum sp. JPD-1 species 1 0 726 1581011 species 1 0 Sulfurospirillum sp. UCH001 0 species 1 Sulfurospirillum deleyianum 521 65553 Sulfurospirillum barnesii 0 1 species 444 44674 0 4 family 1764 2771471 0 1 genus 286130 209 species 1 0 Sulfuricurvum kujiense 209 148813 8 202746 1555 1 Sulfurimonas genus 3 0 species 1 0 Sulfurimonas denitrificans 39766 874 Sulfurimonas autotrophica 0 species 1 202747 673 1 Gammaproteobacteria class 905 0 839 448412 1236 1 Alteromonadales 105 order 0 181 135622 60820 267889 7306 16 9 family 0 1 Colwelliaceae 6268 28228 34 6 genus 0 1 Colwellia 196834 3654 0 3 no rank 1077 58049 0 1 species Colwellia sp. MT41 1 species 0 Colwellia sp. PAMC 20917 1292 1816218 1816219 1285 0 species 1 Colwellia sp. PAMC 21821 Colwellia psychrerythraea 1 species 0 1323 28229 1257 1967665 0 species 1 Colwellia beringensis 3 1022 1518149 1 Thalassotalea genus 2 0 1763536 1019 Thalassotalea crassostreae 0 1 species 1 Idiomarinaceae 6 family 0 2 1296 267893 1294 135575 25 0 5 genus Idiomarina 1 2614829 566 2 no rank 0 0 1 species Idiomarina sp. X4 2055892 328 0 1 species Idiomarina sp. OT37-5b 238 2100422 135577 371 species 1 0 Idiomarina loihiensis 1096243 332 Idiomarina piscisalsi 0 species 1 family 3 0 1 Ferrimonadaceae 285 267892 5 2 280 44011 1 Ferrimonas genus 2 0 species 1 0 Ferrimonas balearica 44012 278 0 25 family Pseudoalteromonadaceae 1 19909 267888 16 418 19893 53246 Pseudoalteromonas 1 0 genus 24 176102 614 Pseudoalteromonas agarivorans 1 species 0 267375 626 species 1 0 Pseudoalteromonas marina Pseudoalteromonas piratica 0 1 species 876 1348114 Pseudoalteromonas phenolica 0 1 species 161398 895 Pseudoalteromonas piscicida 0 1 species 43662 489 Pseudoalteromonas luteoviolacea 1 species 0 43657 1272 0 species 1 Pseudoalteromonas tunicata 999 314281 Pseudoalteromonas aliena 0 species 1 869 247523 Pseudoalteromonas haloplanktis 0 1 species 670 228 Pseudoalteromonas rubra 0 species 1 43658 473 Pseudoalteromonas spongiae 0 1 species 1073 298657 166935 667 Pseudoalteromonas translucida 0 1 species 1209 288 0 species 1 Pseudoalteromonas atlantica Pseudoalteromonas espejiana 0 species 1 708 28107 Pseudoalteromonas arctica 0 1 species 394751 896 Pseudoalteromonas nigrifaciens 0 1 species 28109 680 673 43659 species 1 0 Pseudoalteromonas tetraodonis 695 152297 0 species 1 Pseudoalteromonas issachenkonii no rank 5 0 194690 5091 283699 853 species 1 0 Pseudoalteromonas sp. Bsw20308 Pseudoalteromonas sp. NC201 0 species 1 1892 1514074 0 species 1 Pseudoalteromonas sp. SM9913 234831 725 1720343 865 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 1 0 Pseudoalteromonas sp. 13-15 0 species 1 756 1761891 1067 267891 16 3 family 0 1 Moritellaceae genus 2 0 1 Moritella 1051 58050 4 species 1 0 Moritella viscosa 1047 80854 23 12220 267890 1 Shewanellaceae 25 family 0 153 12197 22 1 Shewanella 24 genus 0 Shewanella baltica 1 species 0 62322 1172 species 1 0 Shewanella violacea 765 60217 0 species 1 Shewanella denitrificans 192073 455 Shewanella pealeana 0 1 species 70864 426 Shewanella sediminis species 1 0 623 271097 359303 220 Shewanella loihica 0 1 species 1 species 0 Shewanella japonica 93973 912 2104 196818 no rank 6 0 Shewanella sp. WE21 0 1 species 2029986 327 2059264 374 0 1 species Shewanella sp. Pdp11 Shewanella sp. MR-7 0 1 species 60481 311 0 species 1 Shewanella sp. ANA-3 94122 334 Shewanella sp. MR-4 1 species 0 60480 269 Shewanella sp. W3-18-1 1 species 0 489 351745 1 species 0 Shewanella frigidimarina 56812 735 Shewanella oneidensis 0 1 species 70863 324 225848 889 1 species 0 Shewanella psychrophila 0 species 1 Shewanella amazonensis 257 60478 600 24 Shewanella putrefaciens 0 1 species 0 species 1 Shewanella bicestrii 2018305 306 817 271098 species 1 0 Shewanella halifaxensis 260364 266 Shewanella marisflavi 0 species 1 Shewanella woodyi 0 species 1 60961 666 species 1 0 Shewanella piezotolerans 507 404011 Psychromonadaceae 1 0 family 4 4 2077 267894 genus 3 0 1 Psychromonas 67572 2073 6 2614957 1044 no rank 1 0 314282 1044 Psychromonas sp. CNPT3 1 species 0 Psychromonas ingrahamii species 1 0 1023 357794 1 Alteromonadaceae family 29 0 38 72275 16479 genus 1 0 1751872 517 Lacimicrobium alkaliphilum 1 species 0 1526571 517 0 3 genus Glaciecola 1 1403 89404 21 749 300231 Glaciecola nitratireducens 0 1 species 0 no rank 1 633 2618684 0 1 species Glaciecola sp. 4H-3-7+YE-5 633 983545 2 517 261825 Agarivorans 1 0 genus 2 Agarivorans gilvus 0 1 species 680279 515 0 genus 10 Alteromonas 1 7737 226 78 1119 314275 1 species 0 Alteromonas mediterranea 0 species 1 Alteromonas naphthalenivorans 715451 573 species 1 0 Alteromonas stellipolaris 233316 673 28108 2793 0 species 1 Alteromonas macleodii 3 no rank 0 1411 2614992 species 1 0 Alteromonas sp. RW2A1 1917158 489 434 2058133 Alteromonas sp. MB-3u-76 0 species 1 488 1777491 1 species 0 Alteromonas sp. Mac1 Alteromonas addita 0 1 species 587 287094 589873 503 Alteromonas australica 0 species 1 1273 1621534 8 0 genus 2 Paraglaciecola 1 0 1 species Paraglaciecola psychrophila 326544 1265 Marinobacter 1 0 10 genus 87 4994 2742 2743 452 Marinobacter hydrocarbonoclasticus 0 1 species 83889 1562 0 no rank 3 1671721 756 Marinobacter sp. CP1 species 1 0 412 1749259 Marinobacter sp. LQ44 0 species 1 0 1 species Marinobacter sp. BSs20148 394 490759 1420917 851 Marinobacter salarius species 1 0 330734 377 Marinobacter psychrophilus 0 1 species Marinobacter similis 0 1 species 254 1420916 Marinobacter salinus 0 1 species 331 1874317 1080 1033846 1 species 0 Marinobacter adhaerens 22122 135619 86 71 order 0 1 Oceanospirillales 11 2257 1920240 1 Kangiellaceae family 6 0 22 2246 261963 1 Kangiella genus 5 0 Kangiella profundi 0 species 1 558 1561924 1144748 567 Kangiella sediminilitoris 0 1 species 261964 576 1 species 0 Kangiella koreensis Kangiella geojedonensis 1 species 0 523 914150 623 191033 14 0 family 3 Oleiphilaceae 1 4 141450 609 1 Oleiphilus genus 2 0 Oleiphilus messinensis 1 species 0 605 141451 550 224379 15 0 3 family Hahellaceae 1 535 158481 15 2 genus 0 1 Hahella Hahella chejuensis 0 species 1 520 158327 Oceanospirillaceae 1 0 13 family 34 135620 4680 643 188907 9 0 2 genus Oleispira 1 species 1 0 Oleispira antarctica 634 188908 Bacterioplanes 1 0 2 genus 6 1537406 442 1 species 0 Bacterioplanes sanyensis 1249553 436 48075 604 5 2 genus 0 1 Marinobacterium 599 1821621 Marinobacterium aestuarii 1 species 0 187492 695 2 genus 2 0 1 Thalassolituus 187493 693 Thalassolituus oleivorans 0 species 1 2262 28253 7 4 genus 0 1 Marinomonas 119864 689 Marinomonas mediterranea 1 species 0 Marinomonas posidonica 1 species 0 588 936476 196814 978 0 1 no rank 400668 978 0 species 1 Marinomonas sp. MWYL1 1 Alcanivoracaceae family 9 0 23 2702 224372 0 genus 2 Ketobacter 1 2025617 517 9 0 species 1 Ketobacter alkanivorans 1917421 508 1 Alcanivorax genus 6 0 74 59753 2162 386 2638842 1 no rank 0 1 species 0 Alcanivorax sp. NBRC 101098 1113728 386 1094342 408 0 1 species Alcanivorax xenomutans 443 1306787 Alcanivorax pacificus 0 1 species 1 species 0 Alcanivorax dieselolei 462 285091 Alcanivorax borkumensis 0 1 species 389 59754 0 5 family Saccharospirillaceae 1 255527 1174 3 7 230494 481 Reinekea 1 0 genus 2 Reinekea forsetii 1 species 0 474 1336806 0 genus 2 Gynuella 1 690 1445504 10 Gynuella sunshinyii 0 species 1 1445505 680 Halomonadaceae 1 0 31 family 105 10050 28256 Salinicola 1 0 2 genus 1 404432 462 1 species 0 Salinicola tamaricis 461 1771309 42054 362 1 0 genus 2 Chromohalobacter 1 0 1 species Chromohalobacter salexigens 361 158080 Halomonas 1 0 15 genus 97 5437 2745 335 507626 Halomonas chromatireducens 1 species 0 0 1 species Halomonas hydrothermalis 326 115561 Halomonas aestuarii 0 species 1 1897729 478 0 species 1 Halomonas huangheensis 406 1178482 2609666 2882 no rank 8 0 316 1504981 Halomonas sp. KO116 0 1 species 1971364 422 0 species 1 Halomonas sp. GT 1962264 312 Halomonas sp. 'Soap Lake #7' species 1 0 Halomonas sp. 'Soap Lake #6' species 1 0 305 1949203 1118153 284 Halomonas sp. GFAJ-1 0 1 species 441 2136172 1 species 0 Halomonas sp. SF2003 1 species 0 Halomonas sp. R57-5 1610576 329 473 1883416 species 1 0 Halomonas sp. 1513 0 1 species Halomonas beimenensis 580 475662 Halomonas campaniensis 0 species 1 213554 333 15 504090 694 1 Kushneria 3 genus 0 Kushneria konosiri 0 1 species 382 698828 species 1 0 Kushneria marisflavi 297 157779 2 genus 0 1 Halotalea 463 376488 4 459 376489 1 species 0 Halotalea alkalilenta 2 genus 0 1 Cobetia 204286 471 5 28258 466 Cobetia marina 0 1 species 2056 114403 0 4 no rank 1 genus 0 114185 397 species 1 0 Candidatus Carsonella ruddii 114186 397 Candidatus Portiera 1 0 genus 2 5 933 235572 Candidatus Portiera aleyrodidarum 0 1 species 928 91844 1 genus 0 1495768 726 726 1495769 species 1 0 Candidatus Evansia muelleri Immundisolibacterales 1 0 4 order 11 1934945 565 0 3 family Immundisolibacteraceae 1 1934946 554 7 3 547 1934947 Immundisolibacter 1 0 genus 2 1 species 0 Immundisolibacter cernigliae 544 1810504 Cellvibrionales 1 0 30 order 41 8756 1706369 0 7 family Spongiibacteraceae 1 1871 1706375 40 5 630749 488 Spongiibacter 1 0 genus 2 483 2631504 0 1 no rank 483 1620392 Spongiibacter sp. IMCC21906 1 species 0 1434050 569 7 0 genus 2 Zhongshania 1 0 1 species Zhongshania aliphaticivorans 1470434 562 1 Oceanicoccus genus 2 0 5 1084558 774 716816 769 Oceanicoccus sagamiensis species 1 0 0 5 family Microbulbiferaceae 1 1510 1706373 5 1 Microbulbifer 4 genus 0 28 48073 1505 0 species 1 Microbulbifer thermotolerans 252514 523 species 1 0 Microbulbifer aggregans 1769779 517 437 260552 1 species 0 Microbulbifer agarilyticus 3950 1706371 39 0 family 13 Cellvibrionaceae 1 Simiduia 1 0 2 genus 1 351 447467 1 species 0 Simiduia agarivorans 447471 350 genus 2 0 1 Agarilytica 1038 2036021 1 1737490 1037 1 species 0 Agarilytica rhodophyticola 5 316625 565 Saccharophagus 1 0 genus 2 Saccharophagus degradans 1 species 0 86304 560 558 2425 7 0 2 genus Teredinibacter 1 2426 551 Teredinibacter turnerae 1 species 0 4 genus 0 1 Cellvibrio 10 1399 8 438 155077 Cellvibrio japonicus species 1 0 no rank 2 0 953 2624793 1 species 0 Cellvibrio sp. PSBB006 487 1987723 466 1945512 0 1 species Cellvibrio sp. PSBB023 10 1384 1706372 Halieaceae 1 0 4 family 35 1217416 1374 Halioglobus 1 0 3 genus 629 930806 Halioglobus pacificus species 1 0 0 species 1 Halioglobus japonicus 710 930805 107992 91347 320 251 order 0 1 Enterobacterales 1 Budviciaceae family 3 0 24 1903416 362 5 82984 338 Pragia 1 0 genus 2 333 82985 Pragia fontium species 1 0 543 44971 334 0 122 family Enterobacteriaceae 1 Shimwellia 1 0 genus 2 1 1335483 167 563 166 0 1 species Shimwellia blattae 5385 547 201 0 genus 22 Enterobacter 1 1208 2608935 no rank 9 0 1914861 145 0 1 species Enterobacter sp. SA187 1 species 0 Enterobacter sp. ODB01 1827481 103 156 2051905 Enterobacter sp. CRENT-193 0 1 species Enterobacter sp. HK169 1 species 0 86 1868135 1166130 202 Enterobacter sp. R4-368 0 species 1 0 1 species Enterobacter sp. 638 399742 162 species 1 0 Enterobacter sp. E20 82 1560339 0 1 species Enterobacter sp. Crenshaw 105 1977566 0 1 species Enterobacter sp. FY-07 167 1692238 354276 3976 0 12 species group Enterobacter cloacae complex 'Hoffmann cluster IV' 0 1 species 105 1812935 800 1092 158836 1 Enterobacter hormaechei species 3 0 1812934 157 1 subspecies 0 Enterobacter cloacae complex 'Hoffmann cluster III' 135 1296536 Enterobacter xiangfangensis 1 subspecies 0 Enterobacter asburiae species 1 0 367 61645 208224 90 species 1 0 Enterobacter kobei Enterobacter ludwigii species 1 0 121 299767 1 species 0 Enterobacter cloacae 1726 550 0 no rank 3 2757714 341 species 1 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 2077137 123 0 species 1 Enterobacter cloacae complex bacterium 104 2027919 114 1915310 Enterobacter cloacae complex sp. ECNIH7 0 1 species 1 species 0 Enterobacter cancerogenus 134 69218 Kosakonia 1 0 genus 5 12 967 1330547 1 species 0 Kosakonia cowanii 208223 167 species 1 0 Kosakonia oryzae 259 497725 0 species 1 Kosakonia radicincitans 309 283686 0 species 1 Kosakonia sacchari 220 1158459 genus 1 0 579 247 247 61648 0 1 species Kluyvera intermedia Lelliottia 1 0 genus 4 8 1330545 750 61646 419 0 1 species Lelliottia amnigena 0 1 species Lelliottia nimipressuralis 69220 168 1907578 155 Lelliottia jeotgali 0 species 1 genus 8 0 1 Cronobacter 413496 1422 25 208 535744 Cronobacter universalis 0 1 species 413503 142 Cronobacter malonaticus species 1 0 0 1 species Cronobacter condimenti 1163710 197 179 413502 species 1 0 Cronobacter turicensis Cronobacter dublinensis 1 species 0 413497 173 28141 309 Cronobacter sakazakii species 1 0 Cronobacter muytjensii 0 1 species 189 413501 2 540 83654 1 Leclercia 4 genus 0 2627398 358 0 no rank 2 1920116 166 0 1 species Leclercia sp. LSNIH3 species 1 0 Leclercia sp. LSNIH1 1920114 192 Leclercia adecarboxylata 0 1 species 83655 180 544 3729 98 0 14 genus Citrobacter 1 35703 485 Citrobacter amalonaticus species 1 0 545 204 0 species 1 Citrobacter koseri 67825 172 Citrobacter rodentium 0 species 1 1344959 2022 0 species group 7 281 57706 Citrobacter braakii species 1 0 2077149 143 0 species 1 Citrobacter freundii complex sp. CFNIH9 2077148 180 0 1 species Citrobacter freundii complex sp. CFNIH4 Citrobacter freundii complex sp. CFNIH3 species 1 0 136 2077147 2066049 173 0 1 species Citrobacter freundii complex sp. CFNIH2 359 67827 Citrobacter werkmanii 1 species 0 750 546 Citrobacter freundii species 1 0 2 no rank 0 2644389 311 1702170 109 Citrobacter sp. FDAARGOS_156 1 species 0 Citrobacter sp. CFNIH10 species 1 0 202 1920110 437 67824 1 species 0 Citrobacter farmeri 3 570 1330546 Pluralibacter 1 0 genus 3 species 1 0 [Enterobacter] lignolyticus 1334193 224 343 61647 1 species 0 Pluralibacter gergoviae 0 genus 4 Shigella 1 335 620 19 1 no rank 0 90 2629414 1813821 90 Shigella sp. PAMC 28760 0 1 species 0 1 species Shigella flexneri 81 623 145 622 Shigella dysenteriae 0 1 species 8730 191675 0 21 no rank 8730 84563 clade 21 0 1 genus 0 155 1906657 155 1778262 Candidatus Doolittlea endobia 0 species 1 2 genus 0 1 Candidatus Gullanella 1906661 473 1 0 species 1 Candidatus Gullanella endobia 472 1070130 0 4 clade 146507 1049 437 568987 1 2 genus 0 1 Candidatus Hamiltonella 138072 436 species 1 0 Candidatus Hamiltonella defensa 192 1199245 0 1 species secondary endosymbiont of Ctenarytaina eucalypti 420 134287 secondary endosymbiont of Heteropsylla cubana 1 species 0 1906659 178 1 0 2 genus Candidatus Hoaglandella 1 Candidatus Hoaglandella endobia 0 species 1 177 1778263 4539 84564 0 clade 7 27 203804 4539 Candidatus Blochmannia 1 0 7 genus 0 1 species Candidatus Blochmannia vafer 932 251535 251542 651 Candidatus Blochmannia chromaiodes 1 species 0 0 2 no rank 711328 1571 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 species 1 828 1505597 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 species 1 743 1505596 Candidatus Blochmannia floridanus 0 species 1 769 203907 1 species 0 Candidatus Blochmannia pennsylvanicus 589 101534 199891 486 1 clade 0 secondary endosymbiont of Trabutina mannipara 0 species 1 486 1835721 7 560 1906660 Candidatus Mikella 1 0 genus 2 0 1 species Candidatus Mikella endobia 1778264 553 3 1682492 1290 1 Candidatus Tachikawaea 2 genus 0 Candidatus Tachikawaea gelatinosa 0 species 1 1287 1410383 8 590 4363 Salmonella 1 0 genus 3 1 species 0 Salmonella enterica 4061 28901 Salmonella bongori 1 species 0 54736 294 5 no rank 0 36866 1553 Enterobacteriaceae bacterium ENNIH2 1 species 0 1920109 192 891974 783 0 species 1 Plautia stali symbiont 1 species 0 Enterobacteriaceae bacterium ENNIH1 197 2066051 693444 170 Enterobacteriaceae bacterium strain FGI 57 0 species 1 1920128 211 Enterobacteriaceae bacterium ENNIH3 0 species 1 Raoultella 1 0 genus 3 3 160674 809 Raoultella ornithinolytica 0 species 1 582 54291 224 575 Raoultella planticola 0 1 species 2 681 401618 Candidatus Riesia 1 0 2 genus Candidatus Riesia pediculicola 1 species 0 679 401619 1 Cedecea 2 genus 0 5 692 158483 Cedecea neteri species 1 0 687 158822 6828 570 112 10 genus 0 1 Klebsiella Klebsiella quasipneumoniae 1 species 0 1463165 257 0 species 1 Klebsiella aerogenes 548 1123 244366 402 Klebsiella variicola 1 species 0 2608929 454 2 no rank 0 Klebsiella sp. M5al 0 species 1 1934254 218 236 1905288 Klebsiella sp. LTGPAF-6F 0 1 species 1134687 637 Klebsiella michiganensis 0 1 species 573 2576 species 1 0 Klebsiella pneumoniae 1 species 0 Klebsiella quasivariicola 2026240 180 Klebsiella oxytoca 1 species 0 1087 571 149 1048757 1 genus 0 149 1048758 1 species 0 Candidatus Moranella endobia 0 genus 2 Candidatus Ishikawaella 1 947 409304 3 Candidatus Ishikawaella capsulata 1 species 0 168169 944 28 561 5773 Escherichia 1 0 genus 5 1499973 177 1 species 0 Escherichia marmotae Escherichia coli 0 1 species 562 5049 409 208962 1 species 0 Escherichia albertii 564 110 1 species 0 Escherichia fergusonii 14 10998 1903412 1 Hafniaceae family 14 0 17 890 568 1 Hafnia 3 genus 0 187 2621980 1 no rank 0 1848580 187 0 1 species Hafnia sp. CBA7124 686 569 1 species 0 Hafnia alvei 2 genus 0 1 Obesumbacterium 209 82982 4 Obesumbacterium proteus 1 species 0 205 82983 Edwardsiella 1 0 8 genus 75 9885 635 318 1821960 Edwardsiella anguillarum species 1 0 no rank 2 0 535 2676541 Edwardsiella sp. EA181011 1 species 0 285 1578828 250 1650654 1 species 0 Edwardsiella sp. LADL05-105 species 1 0 Edwardsiella hoshinae 93378 217 1263550 252 Edwardsiella piscicida species 1 0 636 8228 Edwardsiella tarda 0 species 1 260 67780 0 1 species Edwardsiella ictaluri 39 1903414 9723 Morganellaceae 1 0 family 22 Xenorhabdus 1 0 6 genus 18 626 2274 40577 385 Xenorhabdus poinarii species 1 0 368 351671 Xenorhabdus doucetiae 0 1 species 351679 437 0 species 1 Xenorhabdus hominickii Xenorhabdus bovienii species 1 0 656 40576 410 628 Xenorhabdus nematophila 0 species 1 637 1162 11 0 genus 2 Arsenophonus 1 Arsenophonus symbiont of Lipoptena fortisetosa 0 1 species 1151 634113 1 Photorhabdus genus 4 0 19 1552 29487 600 291112 Photorhabdus asymbiotica 0 species 1 574560 396 1 species 0 Photorhabdus temperata 537 29488 1 species 0 Photorhabdus luminescens Morganella 1 0 2 genus 8 581 371 363 582 1 species 0 Morganella morganii 583 2448 12 0 3 genus Proteus 1 585 889 Proteus vulgaris 0 species 1 584 1547 0 1 species Proteus mirabilis 9 586 1877 1 Providencia genus 4 0 588 734 Providencia stuartii 1 species 0 743 587 Providencia rettgeri 0 species 1 391 126385 0 1 species Providencia alcalifaciens 28 family 0 1 Erwiniaceae 21038 1903409 51 Wigglesworthia 1 0 2 genus 30 2410 51228 Wigglesworthia glossinidia 1 species 0 51229 2380 0 genus 2 Tatumella 1 82986 270 4 266 53336 Tatumella citrea 0 species 1 2 genus 0 545 2100764 306 665913 1 species 0 Pantoea calida 665914 239 species 1 0 Pantoea gaviniae 25 32199 12335 Buchnera 1 0 genus 2 0 1 species Buchnera aphidicola 12310 9 3499 53335 108 11 genus 0 1 Pantoea 1 species 0 Pantoea alhagi 1891675 219 0 species 1 Pantoea rwandensis 154 1076550 1654067 314 species group 1 0 314 549 Pantoea agglomerans 1 species 0 1 species 0 Pantoea ananatis 553 382 216 66269 1 species 0 Pantoea stewartii 889 1235990 species 1 0 Candidatus Pantoea carbekii 3 no rank 0 690 2630326 Pantoea sp. PSNIH1 0 species 1 177 1484158 Pantoea sp. PSNIH2 species 1 0 1484157 263 592316 250 0 species 1 Pantoea sp. At-9b Pantoea vagans 0 species 1 470934 527 genus 8 0 1 Erwinia 1928 551 44 211 338565 0 species 1 Erwinia tasmaniensis species 1 0 Erwinia pyrifoliae 218 79967 0 species 1 Erwinia gerundensis 1619313 216 196 2622719 0 1 no rank 215689 196 Erwinia sp. Ejp617 1 species 0 0 species 1 Erwinia billingiae 372 182337 1922217 437 species 1 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 0 1 species Erwinia amylovora 234 552 451511 387 0 no rank 2 0 2 genus Plesiomonas 1 387 702 11 703 376 species 1 0 Plesiomonas shigelloides 39 family 0 1 Yersiniaceae 1903411 14613 41 Rouxiella genus 1 0 9 1565532 92 629 6798 1 Yersinia genus 13 0 Yersinia intermedia 0 1 species 631 328 Yersinia enterocolitica 0 species 1 1338 630 299 29483 Yersinia aldovae 0 species 1 364 29486 1 species 0 Yersinia ruckeri 0 no rank 1 2653513 287 1839800 287 Yersinia sp. FDAARGOS_228 0 species 1 species group 3 0 2457 1649845 632 778 species 1 0 Yersinia pestis 633 772 0 species 1 Yersinia pseudotuberculosis 1 species 0 Yersinia similis 907 367190 191 263819 Yersinia aleksiciae species 1 0 28152 302 0 1 species Yersinia kristensenii 29485 316 Yersinia rohdei 1 species 0 29484 824 Yersinia frederiksenii species 1 0 695 34037 9 4 genus 0 1 Rahnella 206 34038 Rahnella aquatilis 0 species 1 0 no rank 2 2635087 480 741091 214 0 1 species Rahnella sp. Y9602 1805933 266 species 1 0 Rouxiella sp. ERMR1:05 613 6599 176 0 16 genus Serratia 1 species 1 0 Serratia fonticola 782 47917 species 1 0 Serratia liquefaciens 327 614 615 1827 1 species 0 Serratia marcescens Serratia rubidaea 0 species 1 250 61652 species 1 0 Serratia ficaria 288 61651 species 1 0 Serratia plymuthica 82996 564 158 28151 0 species 1 Serratia proteamaculans 0 8 no rank 2227 2647522 0 1 species Serratia sp. AS12 200 768490 2033438 237 Serratia sp. MYb239 species 1 0 species 1 0 Serratia sp. SCBI 448 488142 200 768493 species 1 0 Serratia sp. AS13 1758196 269 1 species 0 Serratia sp. SSNIH1 263 671990 Serratia sp. FGI94 species 1 0 313 1327989 1 species 0 Serratia sp. FS14 1 species 0 Serratia sp. ATCC 39006 104623 297 4 1745211 234 Chania 1 0 genus 2 1639108 230 Chania multitudinisentens 1 species 0 0 genus 2 Gibbsiella 1 929812 237 2 929813 235 0 species 1 Gibbsiella quercinecans 1903410 5580 19 0 20 family Pectobacteriaceae 1 1 Pectobacterium 6 genus 0 46 122277 2159 554 806 Pectobacterium carotovorum 0 1 species 29471 253 1 species 0 Pectobacterium atrosepticum species 1 0 Pectobacterium polaris 2042057 294 Pectobacterium wasabiae 0 species 1 206 55208 1905730 554 Pectobacterium parmentieri species 1 0 71655 294 4 genus 2 0 1 Brenneria Brenneria goodwinii 0 1 species 290 1109412 genus 6 0 1 Dickeya 204037 1652 37 Dickeya zeae 0 species 1 569 204042 1778540 217 1 species 0 Dickeya fangzhongdai 209 204038 Dickeya dadantii 0 species 1 Dickeya dianthicola 0 species 1 237 204039 Dickeya solani species 1 0 1089444 383 32 1456 84565 1 Sodalis genus 5 0 1 species 0 Sodalis praecaptivus 296 1239307 63612 250 Sodalis glossinidius 0 1 species Sodalis endosymbiont of Henestaris halophilus species 1 0 539 1929246 Candidatus Sodalis pierantonius 0 species 1 339 1486991 order 53 0 1 Xanthomonadales 27528 135614 126 0 38 family Xanthomonadaceae 1 24014 32033 187 Pseudoxanthomonas 1 0 genus 3 21 83618 1070 746 314722 1 species 0 Pseudoxanthomonas suwonensis species 1 0 Pseudoxanthomonas spadix 303 415229 genus 1 0 1381 2370 1381 2371 1 species 0 Xylella fastidiosa 127 40323 6214 1 Stenotrophomonas genus 9 0 196198 1644 0 4 no rank 309 1904944 Stenotrophomonas sp. LM091 0 species 1 0 species 1 Stenotrophomonas sp. KCTC 12332 1793721 393 413 2005046 species 1 0 Stenotrophomonas sp. WZN-1 Stenotrophomonas sp. MYb57 species 1 0 1827305 529 species group 1 0 995085 3009 species 1 0 Stenotrophomonas maltophilia 3009 40324 709 128780 0 species 1 Stenotrophomonas acidaminiphila Stenotrophomonas nitritireducens 0 1 species 83617 380 216778 345 Stenotrophomonas rhizophila 0 1 species 68 3760 61 genus 5 0 1 Lysobacter 0 1 species Lysobacter enzymogenes 69 614 Lysobacter capsici species 1 0 1112 435897 655 262324 species 1 0 Lysobacter gummosus 1318 84531 Lysobacter antibioticus species 1 0 2 genus 0 1 Luteimonas 83614 374 3 2006110 371 Luteimonas sp. 100111 0 1 species 0 17 genus Xanthomonas 1 338 11028 303 29447 291 species 1 0 Xanthomonas albilineans Xanthomonas alfalfae 0 1 species 233 366650 0 2 species group 2480 643453 Xanthomonas fuscans 0 species 1 556 366648 1924 346 0 species 1 Xanthomonas citri 1 species 0 Xanthomonas campestris 1674 339 343 891 Xanthomonas translucens 0 species 1 343 56454 1 species 0 Xanthomonas hortorum 0 species 1 Xanthomonas euvesicatoria 456327 249 1985254 270 1 species 0 Xanthomonas phaseoli species 1 0 Xanthomonas axonopodis 53413 236 Xanthomonas perforans 0 species 1 442694 301 56459 212 species 1 0 Xanthomonas vasicola Xanthomonas sacchari species 1 0 56458 425 2060 347 0 1 species Xanthomonas oryzae species 1 0 Xanthomonas vesicatoria 56460 500 560 48664 species 1 0 Xanthomonas fragariae family 14 0 1 Rhodanobacteraceae 1775411 3388 47 18 231454 1194 Dyella 1 0 4 genus 360 1379159 0 species 1 Dyella jiangningensis species 1 0 Dyella japonica 400 231455 1 species 0 Dyella thiooxydans 445710 416 2233801 320 1 genus 0 2021234 320 Xanthomonadales bacterium D13 1 species 0 323413 589 5 2 genus 0 1 Dokdonella 0 1 species Dokdonella koreensis 584 323415 1 Frateuria 2 genus 0 7 332 70411 0 1 species Frateuria aurantia 325 81475 2 genus 0 1 Rhodanobacter 75309 545 5 666685 540 0 species 1 Rhodanobacter denitrificans 4 242605 361 1 Luteibacter 2 genus 0 242606 357 Luteibacter rhizovicinus species 1 0 Acidiferrobacterales 1 0 order 6 19 1692040 1132 1113 1692041 20 0 family 5 Acidiferrobacteraceae 1 1692042 711 8 2 genus 0 1 Sulfurifustis species 1 0 Sulfurifustis variabilis 703 1675686 Sulfuricaulis 1 0 genus 2 17 382 1744881 365 1620215 Sulfuricaulis limicola 1 species 0 order 43 0 1 Vibrionales 135623 39801 31 1 Vibrionaceae family 42 0 149 39770 641 11 2042066 2813 1 Paraphotobacterium genus 2 0 Paraphotobacterium marinum 1 species 0 1755811 2802 21 511678 2889 Aliivibrio 1 0 4 genus 40269 693 Aliivibrio salmonicida 1 species 0 1 species 0 Aliivibrio wodanis 80852 1189 986 668 Aliivibrio fischeri 0 1 species 297 246861 genus 1 0 297 673 species 1 0 Grimontia hollisae Photobacterium 1 0 4 genus 9 657 6388 1295392 346 Photobacterium gaetbulicola species 1 0 0 species 1 Photobacterium damselae 38293 5156 877 74109 0 1 species Photobacterium profundum Vibrio 1 0 30 genus 363 662 27234 803 45658 Vibrio scophthalmi species 1 0 0 1 species Vibrio nigripulchritudo 28173 708 702 1891919 species group 1 0 0 1 species Vibrio tubiashii 29498 702 12562 717610 0 10 species group 4064 680 0 species 1 Vibrio campbellii 0 species 1 Vibrio rotiferianus 604 190895 Vibrio owensii 0 1 species 754 696485 691 923 1 species 0 Vibrio natriegens 0 2 species subgroup 2315253 1098 719 50719 Vibrio diabolicus 0 species 1 Vibrio antiquarius 0 1 species 150340 379 1439 669 Vibrio harveyi 1 species 0 species 1 0 Vibrio jasicida 431 766224 1445 670 Vibrio parahaemolyticus species 1 0 0 species 1 Vibrio alginolyticus 663 1804 666 810 Vibrio cholerae 1 species 0 0 2 no rank 749 2614977 496 1116375 Vibrio sp. EJY3 species 1 0 Vibrio sp. 2521-89 1 species 0 253 2014742 Vibrio anguillarum 1 species 0 933 55601 Vibrio tasmaniensis species 1 0 821 212663 928 52443 Vibrio tapetis 1 species 0 Vibrio qinghaiensis 1 species 0 2025808 429 1435069 642 Vibrio tritonius species 1 0 426 553239 Vibrio breoganii species 1 0 species 1 0 Vibrio fluvialis 360 676 556 29494 0 species 1 Vibrio furnissii 190893 2021 0 species 1 Vibrio coralliilyticus Vibrio vulnificus 0 species 1 672 1664 0 1 species Vibrio hyugaensis 452 1534743 687 716 1 species 0 Vibrio gazogenes 589 674 Vibrio mimicus species 1 0 1240482 2462 3 6 order 0 1 Orbales 0 5 family Orbaceae 1 1240483 2459 17 1335631 1113 7 2 genus 0 1 Frischella 1267021 1106 Frischella perrara species 1 0 6 1329 1193503 Gilliamella 1 0 genus 2 1196095 1323 0 1 species Gilliamella apicola 43 8297 135624 1 Aeromonadales 29 order 0 84642 8254 65 28 family 0 1 Aeromonadaceae 274 642 6377 Aeromonas 1 0 18 genus species 1 0 Aeromonas hydrophila 1454 644 1 species 0 Aeromonas salmonicida 876 645 Aeromonas schubertii species 1 0 268 652 Aeromonas aquatica species 1 0 261 558964 no rank 8 0 1780 257493 1636608 180 Aeromonas sp. ASNIH3 1 species 0 1 species 0 Aeromonas sp. ASNIH7 155 1920107 species 1 0 Aeromonas sp. CU5 172 2033033 1636606 308 Aeromonas sp. ASNIH1 1 species 0 159 1636607 Aeromonas sp. ASNIH2 0 1 species 0 1 species Aeromonas sp. CA23 2033032 263 Aeromonas sp. ASNIH4 0 species 1 1636609 298 245 1758179 species 1 0 Aeromonas sp. ASNIH5 211 651 Aeromonas media 0 1 species Aeromonas rivipollensis 0 species 1 234 948519 654 637 species 1 0 Aeromonas veronii Aeromonas dhakensis 0 1 species 248 196024 Aeromonas caviae 0 species 1 134 648 genus 3 0 1 Oceanisphaera 225143 727 8 0 1 species Oceanisphaera sp. AMac2203 1903694 381 1 species 0 Oceanisphaera profunda 1416627 338 genus 2 0 1 Zobellella 347533 438 6 Zobellella denitrificans species 1 0 347534 432 43947 239 4 genus 2 0 1 Tolumonas 235 43948 Tolumonas auensis 0 1 species genus 2 0 1 Oceanimonas 408 129577 7 0 1 no rank 2636315 401 0 species 1 Oceanimonas sp. GK1 511062 401 1 Nevskiales order 4 0 17 1775403 389 Sinobacteraceae family 1 0 4 568386 0 2 family 368 2689614 368 469322 33 0 genus 2 Steroidobacter 1 465721 335 0 species 1 Steroidobacter denitrificans 0 order 21 Legionellales 1 118969 17095 21 5 family 0 1 Coxiellaceae 2315 118968 41 134284 774 1 no rank 0 1 species 0 Coxiella-like endosymbiont 1592897 774 1500 776 25 3 genus 0 1 Coxiella 777 724 Coxiella burnetii species 1 0 0 no rank 1 751 2676648 325775 751 species 1 0 Coxiella endosymbiont of Amblyomma americanum 36 444 14759 Legionellaceae 1 0 15 family 115 13846 445 1 Legionella genus 12 0 2005262 1395 Legionella endosymbiont of Polyplax serrata 0 1 species 0 species 1 Legionella oakridgensis 755 29423 96230 1178 0 1 species Legionella fallonii 3791 446 1 species 0 Legionella pneumophila 1315 450 Legionella longbeachae species 1 0 449 970 1 species 0 Legionella hackeliae species 1 0 Legionella lansingensis 45067 718 66969 1056 Legionella waltersii 0 1 species 0 species 1 Legionella sainthelensi 28087 1330 0 1 species Legionella spiritensis 367 452 1867846 856 Legionella clemsonensis 0 species 1 465 877 7 0 genus 2 Tatlockia 1 451 870 Tatlockia micdadei species 1 0 Methylococcales 1 0 order 13 11 135618 3155 0 family 12 Methylococcaceae 1 403 3144 23 3 295 413 Methylococcus 1 0 genus 2 Methylococcus capsulatus 1 species 0 414 292 645 39773 5 genus 2 0 1 Methylomicrobium 640 271065 Methylomicrobium alcaliphilum 0 1 species genus 2 0 1 Methylovulum 348 762296 2 species 1 0 Methylovulum psychrotolerans 346 1704499 0 5 genus Methylomonas 1 1833 416 51 1 no rank 0 369 2608980 species 1 0 Methylomonas sp. DH-1 1727196 369 Methylomonas koyamae 0 species 1 371 702114 421 375 species 1 0 Methylomonas methanica species 1 0 Methylomonas denitrificans 1538553 667 72274 77003 209 order 129 0 1 Pseudomonadales 0 family 86 Pseudomonadaceae 1 135621 46195 286 351 1300 subfamily 3 0 1300 352 19 0 3 genus Azotobacter 1 0 1 species Azotobacter vinelandii 354 495 Azotobacter chroococcum species 1 0 786 353 Pseudomonas 1 0 80 genus 1130 44022 286 224 1788301 1 species 0 Pseudomonas versuta 104087 648 species 1 0 Pseudomonas frederiksbergensis 0 1 species Pseudomonas rhizosphaerae 239 216142 2 species group 0 136842 2005 species 1 0 Pseudomonas fragi 469 296 587753 1536 0 1 species Pseudomonas chlororaphis Pseudomonas antarctica 0 1 species 219572 207 Pseudomonas alcaliphila 0 species 1 101564 334 0 no rank 30 8757 196821 310 1028989 Pseudomonas sp. StFLB209 species 1 0 2083052 287 species 1 0 Pseudomonas sp. SWI36 0 1 species Pseudomonas sp. JY-Q 240 1338689 species 1 0 Pseudomonas sp. FGI182 1259844 235 1898684 352 Pseudomonas sp. LPH1 1 species 0 1 species 0 Pseudomonas sp. GR 6-02 1659194 244 418 1415630 Pseudomonas sp. TKP 0 1 species 1636610 298 species 1 0 Pseudomonas sp. PONIH3 Pseudomonas sp. XWY-1 species 1 0 241 2069256 323 1611770 species 1 0 Pseudomonas sp. MRSN12121 Pseudomonas sp. MYb193 0 1 species 1827300 212 0 species 1 Pseudomonas sp. NC02 2067572 249 1500686 284 0 1 species Pseudomonas sp. Os17 Pseudomonas sp. CC6-YY-74 species 1 0 479 1930532 Pseudomonas sp. LH1G9 0 species 1 280 2083055 0 1 species Pseudomonas sp. HLS-6 2049589 233 263 1207075 Pseudomonas sp. UW4 species 1 0 323 1981174 species 1 0 Pseudomonas sp. M30-35 2083051 230 species 1 0 Pseudomonas sp. SWI6 2083054 185 1 species 0 Pseudomonas sp. LG1D9 Pseudomonas sp. S-6-2 0 species 1 312 1931241 212 69328 1 species 0 Pseudomonas sp. VLB120 1856685 414 0 species 1 Pseudomonas sp. TCU-HL1 251 1500687 Pseudomonas sp. St29 species 1 0 491 1283291 Pseudomonas sp. URMO17WK12:I11 0 1 species 1294143 409 0 species 1 Pseudomonas sp. ATCC 13867 230 2083053 0 species 1 Pseudomonas sp. SWI44 193 2018067 1 species 0 Pseudomonas sp. FDAARGOS_380 0 1 species Pseudomonas sp. CCOS 191 269 1649877 0 species 1 Pseudomonas sp. DR 5-09 290 1534110 species group 9 0 136843 6741 562 200450 Pseudomonas trivialis 0 1 species species 1 0 Pseudomonas orientalis 223 76758 0 species 1 Pseudomonas protegens 407 380021 76761 258 0 species 1 Pseudomonas veronii 3918 294 Pseudomonas fluorescens 0 species 1 Pseudomonas corrugata 0 species 1 47879 247 0 species 1 Pseudomonas mandelii 237 75612 200451 261 Pseudomonas poae 0 1 species 1 species 0 Pseudomonas azotoformans 47878 628 Pseudomonas knackmussii 1 species 0 395 65741 Pseudomonas parafulva 1 species 0 157782 547 Pseudomonas cerasi 1 species 0 312 1583341 136841 6109 0 6 species group 1 species 0 Pseudomonas resinovorans 460 53412 43263 416 Pseudomonas alcaligenes species 1 0 1 species subgroup 0 587 1232139 1149133 587 Pseudomonas furukawaii 0 1 species species 1 0 Pseudomonas aeruginosa 2598 287 747 53408 0 species 1 Pseudomonas citronellolis 300 1301 Pseudomonas mendocina 1 species 0 0 1 species Pseudomonas lurida 188 244566 species group 2 0 2976 136846 0 species subgroup 1 578833 2602 316 2602 0 1 species Pseudomonas stutzeri Pseudomonas balearica species 1 0 374 74829 0 1 species Pseudomonas psychrotolerans 237610 385 Pseudomonas entomophila 0 1 species 312306 259 species 1 0 Pseudomonas alkylphenolica 237609 199 6480 136845 species group 6 0 0 1 species Pseudomonas fulva 47880 510 0 1 species Pseudomonas plecoglossicida 279 70775 0 1 species Pseudomonas putida 303 3655 0 species 1 Pseudomonas oryzihabitans 47885 361 Pseudomonas mosselii 0 1 species 823 78327 0 1 species Pseudomonas monteilii 76759 852 Pseudomonas cremoricolorata 0 species 1 247 157783 496 1853130 Pseudomonas silesiensis 1 species 0 930166 576 Pseudomonas brassicacearum species 1 0 species group 8 0 136849 3997 251701 574 1 species 0 Pseudomonas syringae group genomosp. 3 46257 264 0 1 species Pseudomonas avellanae 674 251698 0 2 species subgroup Pseudomonas savastanoi 0 species 1 29438 353 Pseudomonas amygdali species 1 0 321 47877 2775504 203 0 1 no rank 1 species 0 Pseudomonas sp. Lz4W 1206777 203 223 36746 Pseudomonas cichorii 0 1 species 1851 251695 0 species subgroup 1 1 species 0 Pseudomonas syringae 317 1851 208 33069 Pseudomonas viridiflava 1 species 0 571 198620 1 species 0 Pseudomonas koreensis 7 587 1849530 1 Oblitimonas genus 2 0 Oblitimonas alkaliphila species 1 0 580 1697053 42 family 0 1 Moraxellaceae 30599 468 74 256 469 23026 Acinetobacter 1 0 25 genus 0 species 1 Acinetobacter johnsonii 40214 491 Acinetobacter junii 0 1 species 40215 1004 108981 544 1 species 0 Acinetobacter schindleri Acinetobacter radioresistens 1 species 0 579 40216 Acinetobacter larvae 0 1 species 1789224 610 4126 196816 0 no rank 7 0 1 species Acinetobacter sp. TGL-Y2 659 1407071 1 species 0 Acinetobacter sp. ACNIH2 1758189 654 566 1636603 1 species 0 Acinetobacter sp. ACNIH1 1808001 414 0 1 species Acinetobacter sp. LoGeW2-3 species 1 0 Acinetobacter sp. TTH0-4 727 1646498 0 1 species Acinetobacter sp. NCu2D-2 1608473 526 2079596 580 Acinetobacter sp. SWBY1 species 1 0 301 756892 1 species 0 Acinetobacter indicus 1 species 0 Acinetobacter oleivorans 1148157 737 Acinetobacter bereziniae species 1 0 906 106648 487316 566 Acinetobacter soli species 1 0 740 202950 0 species 1 62977 740 strain 1 0 Acinetobacter sp. ADP1 0 5 species group 10045 909768 470 3465 0 species 1 Acinetobacter baumannii 106654 1010 0 species 1 Acinetobacter nosocomialis 471 1530 0 1 species Acinetobacter calcoaceticus 0 species 1 Acinetobacter pittii 48296 3238 802 1785128 species 1 0 Acinetobacter lactucae Acinetobacter haemolyticus 0 species 1 827 29430 0 1 species Acinetobacter equi 1294 1324350 Moraxella 1 0 5 genus 24 2383 475 658 480 0 species 1 Moraxella catarrhalis 0 1 species Moraxella bovoculi 386891 515 887 34062 species 1 0 Moraxella osloensis Moraxella ovis 1 species 0 299 29433 Psychrobacter 1 0 genus 11 108 5116 497 196806 2918 0 6 no rank 1028416 461 Psychrobacter sp. DAB_AL43B species 1 0 376 1720344 1 species 0 Psychrobacter sp. AntiMn-1 1 species 0 Psychrobacter sp. P11G5 1699624 532 Psychrobacter sp. G species 1 0 571800 459 558 1699622 0 species 1 Psychrobacter sp. P2G3 532 349106 Psychrobacter sp. PRwf-1 species 1 0 1 species 0 Psychrobacter alimentarius 633 261164 species 1 0 Psychrobacter cryohalolentis 442 330922 334543 443 0 1 species Psychrobacter arcticus 572 45610 0 species 1 Psychrobacter urativorans 51 order 0 1 Chromatiales 135613 13798 143 49 4530 72276 1 Ectothiorhodospiraceae family 18 0 1 Ectothiorhodospira genus 2 0 15 1051 455 0 no rank 1 440 2684909 440 1442136 Ectothiorhodospira sp. BSL-9 0 1 species 6 genus 0 1 Thioalkalivibrio 106633 2171 54 Thioalkalivibrio nitratireducens 0 1 species 414 186931 354 106634 species 1 0 Thioalkalivibrio versutus 0 1 species Thioalkalivibrio sulfidiphilus 1033854 561 0 1 species Thioalkalivibrio paradoxus 374 108010 0 no rank 1 414 2621013 414 396595 Thioalkalivibrio sp. K90mix species 1 0 1 Halorhodospira 2 genus 0 5 353 85108 348 1053 0 1 species Halorhodospira halophila 1 Acidihalobacter 2 genus 0 4 445 1765964 160660 441 species 1 0 Acidihalobacter prosperus 1335745 637 8 genus 3 0 1 Spiribacter 1335757 380 Spiribacter curvatus 0 1 species 1335746 249 Spiribacter salinus 1 species 0 Alkalilimnicola 1 0 genus 2 13 133193 420 Alkalilimnicola ehrlichii species 1 0 351052 407 1 Chromatiaceae family 18 0 70 6206 1046 13724 462 8 2 genus 0 1 Thiocystis Thiocystis violascens species 1 0 73141 454 0 genus 2 Candidatus Nitrosoglobus 1 1980513 619 1 Candidatus Nitrosoglobus terrae 0 1 species 1630141 618 16 1227 1479 Nitrosococcus 1 0 genus 4 133539 350 0 species 1 Nitrosococcus halophilus 664 473531 0 species 1 Nitrosococcus watsonii 449 1229 Nitrosococcus oceani species 1 0 484 82569 no rank 1 0 484 1978339 species 1 0 Chromatiaceae bacterium 2141T.STBD.0c.01a 2 502 156885 Thioflavicoccus 1 0 2 genus 80679 500 0 species 1 Thioflavicoccus mobilis 8 421 85072 1 Allochromatium genus 2 0 0 1 species Allochromatium vinosum 413 1049 Thiodictyon 1 0 2 genus 16 1615 53392 1166950 1599 Candidatus Thiodictyon syntrophicum 0 species 1 2 genus 0 1 Marichromatium 85076 554 10 Marichromatium purpuratum 0 1 species 544 37487 family 2 0 444 1738654 genus 2 0 1 Woeseia 1738655 444 24 1 species 0 Woeseia oceani 1548547 420 255526 563 6 0 4 family Halothiobacillaceae 1 557 109262 18 genus 3 0 1 Halothiobacillus 267 2636392 0 1 no rank 0 species 1 Halothiobacillus sp. LS2 267 1860122 927 272 Halothiobacillus neapolitanus species 1 0 family 3 0 1 Granulosicoccaceae 449719 742 6 19 437504 736 1 Granulosicoccus 2 genus 0 437505 717 Granulosicoccus antarcticus 0 species 1 1676141 642 4 0 family 3 Wenzhouxiangellaceae 1 1676142 638 16 2 genus 0 1 Wenzhouxiangella Wenzhouxiangella marina 0 species 1 1579979 622 no rank 2 0 528 451214 11 528 1273155 1 Thiohalobacter genus 2 0 Thiohalobacter thiocyanaticus 1 species 0 585455 517 0 order 3 456 135615 9 456 868 Cardiobacteriaceae 1 0 3 family 6 869 447 Dichelobacter 1 0 genus 2 441 870 Dichelobacter nodosus species 1 0 order 36 0 1 Thiotrichales 72273 31785 29 1 Francisellaceae 15 family 0 34 34064 22876 279 262 21526 1 Francisella 12 genus 0 1676 1542390 Francisella sp. CA97-1460 species 1 0 species 1 0 Francisella hispaniensis 622488 1353 573570 1543 Francisella sp. TX077310 species 1 0 1 species 0 Francisella halioticida 2724 549298 573569 1142 Francisella sp. TX077308 1 species 0 263 3886 Francisella tularensis 0 1 species 3058 28110 0 1 species Francisella philomiragia 657445 2035 Francisella noatunensis species 1 0 1 species 0 Francisella persica 1135 954 2610885 2695 0 2 no rank species 1 0 Francisella sp. MA067296 475375 1127 1547445 1568 0 species 1 Francisella sp. FSC1006 Allofrancisella 1 0 genus 2 1 1316 1869285 594679 1315 1 species 0 Allofrancisella guangzhouensis 17 135617 2072 Thiotrichaceae 1 0 5 family 1 Beggiatoa 2 genus 0 3 1021 1141 1138 288004 Beggiatoa leptomitoformis 1 species 0 2 genus 0 1 Thioploca 914 40751 9 905 40754 Thioploca ingrica species 1 0 Piscirickettsiaceae 1 0 15 family 47 135616 6808 genus 3 0 1 Methylophaga 40222 1123 24 0 species 1 Methylophaga nitratireducenticrescens 622 754476 0 1 species Methylophaga frappieri 754477 477 47 3129 34067 1 Cycloclasticus genus 4 0 1329899 1081 Cycloclasticus zancles 0 species 1 no rank 2 0 2001 2621467 1067 385025 Cycloclasticus sp. P1 species 1 0 934 728003 Cycloclasticus sp. PY97N species 1 0 1 Piscirickettsia genus 2 0 9 1237 1198 Piscirickettsia salmonis 0 species 1 1238 1189 Hydrogenovibrio 1 0 2 genus 2 521 28884 519 39765 Hydrogenovibrio crunogenus 0 species 1 0 3 genus Thiomicrospira 1 933 790 10 92245 417 1 species 0 Thiomicrospira aerophila 0 1 species Thiomicrospira cyclica 147268 363 118884 9398 0 no rank 14 2 genus 0 1 Pseudohongiella 1524249 478 2 0 species 1 Pseudohongiella spirulinae 476 1249552 198346 1681 1 clade 0 Candidatus Baumannia cicadellinicola species 1 0 1681 186490 305 1608298 5 2 genus 0 1 Thiolapillus Thiolapillus brandeum 0 species 1 300 1076588 3313 32036 0 4 clade 6 1070 1541743 1 Candidatus Ruthia 2 genus 0 386487 1064 Candidatus Ruthia magnifica 0 1 species Bathymodiolus septemdierum thioautotrophic gill symbiont 0 1 species 927 113267 Calyptogena okutanii thioautotrophic gill symbiont 1 species 0 1316 410330 Sedimenticola 1 0 2 genus 2 576 349742 0 1 species Sedimenticola thiotaurini 1543721 574 Candidatus Thioglobus 1 0 3 genus 32 655184 3045 928 1705394 Candidatus Thioglobus autotrophicus species 1 0 2085 1427364 Candidatus Thioglobus singularis species 1 0 23 14236 135625 Pasteurellales 1 0 33 order Pasteurellaceae 1 0 32 family 104 712 14213 1 Basfia 2 genus 0 5 294 697331 289 157673 0 species 1 [Mannheimia] succiniciproducens 1 Pasteurella 3 genus 0 20 2570 745 754 730 Pasteurella dagmatis species 1 0 Pasteurella multocida 0 species 1 747 1820 5 genus 0 1 Actinobacillus 713 1354 9 67854 250 0 species 1 Actinobacillus succinogenes 1 species 0 Actinobacillus suis 348 716 715 403 Actinobacillus pleuropneumoniae 0 species 1 344 718 species 1 0 Actinobacillus equuli 155493 557 4 0 2 genus Gallibacterium 1 750 553 1 species 0 Gallibacterium anatis Haemophilus 1 0 genus 6 47 4625 724 species 1 0 Haemophilus pittmaniae 249188 395 0 1 species [Haemophilus] ducreyi 933 730 727 2369 Haemophilus influenzae 0 1 species 468 729 1 species 0 Haemophilus parainfluenzae 2609962 413 0 no rank 1 Haemophilus sp. oral taxon 036 0 1 species 712310 413 4 416916 953 Aggregatibacter 1 0 3 genus 458 732 0 species 1 Aggregatibacter aphrophilus 0 species 1 Aggregatibacter actinomycetemcomitans 714 491 1 476528 599 1 Bibersteinia genus 2 0 1 species 0 Bibersteinia trehalosi 598 47735 0 genus 4 Mannheimia 1 75984 1523 16 no rank 1 0 2645054 402 Mannheimia sp. USDA-ARS-USMARC-1261 0 species 1 1432056 402 1 species 0 Mannheimia haemolytica 75985 473 632 85404 species 1 0 Mannheimia varigena 214906 845 10 2 genus 0 1 Histophilus Histophilus somni species 1 0 835 731 2 genus 0 1 Glaesserella 789 2094023 3 Glaesserella parasuis 0 species 1 786 738 783 33811 0 no rank 2 gamma proteobacterium HdN1 0 1 species 408 83406 375 1248727 endosymbiont of unidentified scaly snail isolate Monju 0 species 1 1 Alphaproteobacteria class 570 0 429 28211 517592 0 8 no rank 82117 5613 2 genus 0 1 Micavibrio 213485 616 4 Micavibrio aeruginosavorus 1 species 0 349221 612 3405 62654 0 clade 2 Candidatus Puniceispirillum 1 0 2 genus 12 3405 767891 0 1 species Candidatus Puniceispirillum marinum 767892 3393 32 816 991903 Polymorphum 1 0 genus 2 991904 784 0 species 1 Polymorphum gilvum 1 Phreatobacter genus 2 0 14 1632780 776 1868589 762 Phreatobacter sp. S-12 0 1 species 2457 2800060 6 order 0 2457 69657 44 6 family 0 1 Hyphomonadaceae 1 Hyphomonas 3 genus 0 22 1068 85 409 81032 species 1 0 Hyphomonas neptunium 0 1 no rank 2630699 637 0 species 1 Hyphomonas sp. Mor2 1906738 637 2723 1345 20 2 genus 0 1 Hirschia 1325 2724 0 species 1 Hirschia baltica 4 255473 672 Parvularculales 1 0 4 order 15 668 255474 Parvularculaceae 1 0 family 3 1 Parvularcula 2 genus 0 18 653 208215 635 208216 0 species 1 Parvularcula bermudensis 27 204458 7061 1 Caulobacterales 20 order 0 Caulobacteraceae 1 0 19 family 114 7034 76892 1 Asticcacaulis genus 2 0 8 76890 398 species 1 0 Asticcacaulis excentricus 78587 390 395 81440 1 no rank 0 species 1 0 Caulobacteraceae bacterium OTSz_A_272 395 1759059 Brevundimonas 1 0 genus 7 127 2411 41275 0 species 1 Brevundimonas vesicularis 41276 326 377 588932 0 1 species Brevundimonas naejangsanensis Brevundimonas subvibrioides species 1 0 421 74313 0 3 no rank 2622653 1160 0 1 species Brevundimonas sp. DS20 342 1532555 488 1938605 Brevundimonas sp. LM2 0 species 1 Brevundimonas sp. GW460-12-10-14-LB2 0 1 species 330 1827469 6 genus 0 1 Caulobacter 3084 75 82 Caulobacter segnis 0 1 species 537 88688 1 species 0 Caulobacter henricii 69395 419 882 155892 1 species 0 Caulobacter vibrioides 1 no rank 0 648 2648921 366602 648 0 1 species Caulobacter sp. K31 516 69666 Caulobacter mirabilis 0 species 1 8 20 632 Phenylobacterium 1 0 2 genus 284016 624 1 species 0 Phenylobacterium zucineum 596 108606 356 1 Rhizobiales 212 order 0 Beijerinckiaceae 1 0 5 family 4 45404 982 532 521 13 0 2 genus Beijerinckia 1 0 1 species Beijerinckia indica 533 508 0 2 genus Methylocella 1 457 120652 7 1 species 0 Methylocella silvestris 199596 450 Methylobacteriaceae 1 0 15 family 47 119045 9482 1 Microvirga 2 genus 0 9 186650 601 592 1882682 1 species 0 Microvirga ossetica 2282523 3423 genus 3 0 445 29429 Methylobacterium zatmanii species 1 0 2034 408 0 1 species Methylobacterium extorquens Methylobacterium populi 0 species 1 223967 944 0 genus 9 Methylobacterium 1 407 5411 279 0 1 species Methylobacterium phyllosphaerae 418223 528 Methylobacterium aquaticum 0 1 species 270351 854 species 1 0 Methylobacterium oryzae 517 334852 no rank 3 0 2615210 1841 0 species 1 Methylobacterium sp. 4-46 426117 835 Methylobacterium sp. C1 species 1 0 1479019 589 417 925818 species 1 0 Methylobacterium sp. AMS5 0 species 1 Methylobacterium nodulans 114616 776 Methylobacterium radiotolerans species 1 0 31998 616 9 2036754 1530 Chelatococcaceae 1 0 family 4 0 genus 3 Chelatococcus 1 1521 28209 51 0 no rank 1 2638111 768 768 1702325 Chelatococcus sp. CO-6 0 species 1 species 1 0 Chelatococcus daeguensis 444444 702 1 Phyllobacteriaceae 20 family 0 69 69277 8684 Aminobacter 1 0 2 genus 20 31988 679 83263 659 species 1 0 Aminobacter aminovorans 239 5738 68287 Mesorhizobium 1 0 9 genus Mesorhizobium sp. B7 0 1 species 1670800 617 Mesorhizobium australicum 0 species 1 536018 581 Mesorhizobium amorphae 1 species 0 667 71433 753 325217 1 no rank 0 753 278153 Mesorhizobium sp. WSM1497 species 1 0 Mesorhizobium opportunistum species 1 0 593909 657 871 39645 species 1 0 Mesorhizobium ciceri Mesorhizobium japonicum 0 species 1 2066070 730 Mesorhizobium loti 0 species 1 381 623 245876 590 26 genus 2 0 1 Nitratireductor 564 472175 1 species 0 Nitratireductor basaltis 1 Chelativorans genus 2 0 9 449972 386 377 2643807 0 no rank 1 377 266779 1 species 0 Chelativorans sp. BNC1 274591 713 12 genus 2 0 1 Hoeflea 0 no rank 1 2614931 701 1620421 701 0 1 species Hoeflea sp. IMCC20628 2 genus 0 1 Phyllobacterium 509 28100 5 504 1867719 1 species 0 Phyllobacterium zundukense 861 119043 4 3 family 0 1 Rhodobiaceae Parvibaculum 1 0 2 genus 22 256616 857 256618 835 Parvibaculum lavamentivorans species 1 0 1574 31993 11 6 family 0 1 Methylocystaceae 1 Methylosinus genus 2 0 13 425 611 1 species 0 Methylosinus trichosporium 426 598 3 genus 0 1 Methylocystis 133 952 41 2625913 454 0 1 no rank 454 187303 Methylocystis sp. SC2 species 1 0 Methylocystis bryophila species 1 0 655015 457 209 28472 82115 1 Rhizobiaceae 55 family 0 7 323620 754 1 Shinella 2 genus 0 747 2643062 0 no rank 1 747 879274 0 1 species Shinella sp. HZN7 1 Liberibacter 6 genus 0 129 5878 34019 1297 309868 Candidatus Liberibacter americanus 0 1 species 1133 556287 Candidatus Liberibacter solanacearum 0 species 1 Candidatus Liberibacter africanus species 1 0 939 34020 1273132 1446 Liberibacter crescens 0 species 1 species 1 0 Candidatus Liberibacter asiaticus 934 34021 227292 5778 0 10 no rank 951 106591 22 genus 3 0 1 Ensifer 516 106592 0 1 species Ensifer adhaerens Ensifer sojae 0 1 species 716925 413 4827 28105 108 0 7 genus Sinorhizobium 1 456 110321 1 species 0 Sinorhizobium medicae 1 species group 0 1514 663276 Sinorhizobium fredii 0 1 species 380 1514 Sinorhizobium americanum 1 species 0 194963 575 no rank 2 0 2613772 1084 1842534 593 1 species 0 Sinorhizobium sp. RAC02 Sinorhizobium sp. CCBAU 05631 species 1 0 794846 491 species 1 0 Sinorhizobium meliloti 1090 382 227290 15853 no rank 36 0 69 3929 357 Agrobacterium 1 0 genus 7 2632611 812 0 2 no rank Agrobacterium sp. H13-3 species 1 0 346 861208 species 1 0 Agrobacterium sp. RAC06 1842536 466 Agrobacterium vitis 0 1 species 476 373 Agrobacterium rhizogenes 0 species 1 359 385 0 2 species group 2187 1183400 species 1 0 Agrobacterium fabrum 390 1176649 1797 358 Agrobacterium tumefaciens 0 1 species 697 1525371 1 2 genus 0 1 Neorhizobium Neorhizobium galegae 1 species 0 399 696 Rhizobium 1 0 genus 27 666 379 11227 2621 384 1 species 0 Rhizobium leguminosarum 608 56730 Rhizobium gallicum 0 species 1 985 396 Rhizobium phaseoli 0 1 species 1 species 0 Rhizobium tropici 408 398 Rhizobium etli 1 species 0 1326 29449 0 no rank 21 2613769 4613 87 1703961 Rhizobium sp. N1314 0 species 1 Rhizobium sp. ACO-34A species 1 0 1571470 438 2 1703960 Rhizobium sp. N113 1 species 0 1703965 1 1 species 0 Rhizobium sp. N6212 2020311 309 Rhizobium sp. Kim5 0 species 1 Rhizobium sp. N731 1 species 0 1703966 87 1 species 0 Rhizobium sp. N741 4 1703967 1125847 423 Rhizobium sp. NT-26 0 1 species 0 1 species Rhizobium sp. NXC14 307 1981173 0 species 1 Rhizobium sp. N1341 2 1703962 Rhizobium sp. 10195 0 1 species 2028343 399 Rhizobium sp. N621 species 1 0 1 1703964 424182 341 1 species 0 Rhizobium sp. IRBG74 0 species 1 Rhizobium sp. N324 1703969 387 0 1 species Rhizobium sp. CIAT894 339 2020312 328 1869170 Rhizobium sp. S41 1 species 0 1 species 0 Rhizobium sp. N871 5 1703968 Rhizobium sp. TAL182 0 species 1 2020313 107 304 1914541 0 1 species Rhizobium sp. Y9 418 2048897 Rhizobium sp. NXC24 0 species 1 Rhizobium sp. IE4771 0 species 1 324 1301032 family 26 0 1 Bradyrhizobiaceae 17204 41294 170 86 85413 2922 1 Bosea genus 5 0 778 1526658 Bosea vaviloviae species 1 0 2058 2653178 3 no rank 0 742 2015316 0 1 species Bosea sp. AS-1 798 1842539 Bosea sp. RAC05 0 species 1 Bosea sp. PAMC 26642 species 1 0 1792307 518 genus 11 0 1 Bradyrhizobium 374 8253 270 no rank 6 0 4263 2631580 0 1 species Bradyrhizobium sp. SK17 824 2057741 Bradyrhizobium sp. CCGE-LA001 0 species 1 1223566 649 376 724 Bradyrhizobium sp. 1 species 0 115808 683 species 1 0 Bradyrhizobium sp. ORS 285 716 114615 Bradyrhizobium sp. ORS 278 0 species 1 Bradyrhizobium sp. BTAi1 0 species 1 667 288000 Bradyrhizobium icense species 1 0 1274631 605 702 44255 0 1 species Bradyrhizobium oligotrophicum 1355477 1308 Bradyrhizobium diazoefficiens 0 1 species Bradyrhizobium japonicum 1 species 0 1105 375 2 genus 0 1 Oligotropha 40136 483 1 species 1 0 Oligotropha carboxidovorans 40137 482 29 4066 1073 1 Rhodopseudomonas genus 2 0 4037 1076 species 1 0 Rhodopseudomonas palustris 13 1649510 479 Variibacter 1 0 genus 2 Variibacter gotjawalensis 1 species 0 466 1333996 17 911 831 Nitrobacter 1 0 genus 3 912 445 Nitrobacter hamburgensis 0 1 species Nitrobacter winogradskyi 0 species 1 913 369 3576 118882 17 0 20 family Brucellaceae 1 0 genus 5 Ochrobactrum 1 528 2133 42 Ochrobactrum anthropi 0 1 species 505 529 271865 490 Ochrobactrum sp. A44 species 1 0 Ochrobactrum pituitosum 0 species 1 607 571256 1 species 0 Ochrobactrum pseudogrignonense 419475 489 1 Brucella 14 genus 0 525 1426 234 61 36855 Brucella canis 1 species 0 120577 61 1 species 0 Brucella ceti 236 18 species 1 0 Brucella ovis 235 55 1 species 0 Brucella abortus Brucella microti 1 species 0 29 444163 29459 32 1 species 0 Brucella melitensis Brucella vulpis 0 species 1 112 981386 68 120576 species 1 0 Brucella pinnipedialis 2632610 367 no rank 4 0 26 1891098 species 1 0 Brucella sp. 2002734562 Brucella sp. 09RB8471 1 species 0 106 1149952 Brucella sp. 141012304 species 1 0 103 1885919 Brucella sp. 09RB8910 0 species 1 132 1844051 0 1 species Brucella suis 98 29461 0 6 no rank 1831 119042 18 585 1734920 1 Pseudorhodoplanes 2 genus 0 567 1235591 species 1 0 Pseudorhodoplanes sinuspersici 0 genus 2 Methyloceanibacter 1 541 1484898 15 526 1384459 1 species 0 Methyloceanibacter caenitepidi Hartmannibacter 1 0 genus 2 18 705 1572860 1482074 687 Hartmannibacter diazotrophicus species 1 0 Xanthobacteraceae 1 0 family 7 38 335928 2011 1 Azorhizobium 2 genus 0 10 593 6 7 583 Azorhizobium caulinodans 0 1 species 2 genus 0 1 Xanthobacter 711 279 17 694 280 0 1 species Xanthobacter autotrophicus 30 669 152053 Starkeya 1 0 2 genus species 1 0 Starkeya novella 921 639 family 19 0 1 Hyphomicrobiaceae 6449 45401 60 4 genus 0 1 Hyphomicrobium 81 1795 85 0 1 species Hyphomicrobium denitrificans 572 53399 749 2619925 no rank 1 0 1 species 0 Hyphomicrobium sp. MC1 749 717785 1427356 389 Hyphomicrobium nitrativorans 1 species 0 615 59282 11 0 2 genus Blastochloris 1 Blastochloris viridis species 1 0 604 1079 1 Devosia genus 4 0 59 1806 46913 no rank 3 0 196773 1747 0 1 species Devosia sp. I507 2083786 485 656 1736675 0 1 species Devosia sp. A16 species 1 0 Devosia sp. H5989 606 1643450 0 2 genus Rhodomicrobium 1 1068 525 12 1069 513 species 1 0 Rhodomicrobium vannielii 10 119044 469 1 Filomicrobium 2 genus 0 459 1608628 Candidatus Filomicrobium marinum 1 species 0 2 genus 0 1 Pelagibacterium 454 1082930 9 445 531813 Pelagibacterium halotolerans 1 species 0 25 725 29407 Rhodoplanes 1 0 2 genus no rank 1 0 2619116 700 674703 700 0 species 1 Rhodoplanes sp. Z2-YC6860 255475 2235 9 0 7 family Aurantimonadaceae 1 293088 1692 60 genus 4 0 1 Martelella 1486262 399 Martelella endophytica species 1 0 687 293089 Martelella mediterranea species 1 0 1 no rank 0 2629616 546 0 species 1 Martelella sp. AD-3 546 686597 1 Aureimonas 2 genus 0 27 534 414371 507 2615206 1 no rank 0 0 1 species Aureimonas sp. AU20 1349819 507 0 family 18 Bartonellaceae 1 772 23119 19 Bartonella 1 0 genus 17 437 773 23100 1170 1686310 species 1 0 Bartonella apis 85701 1336 1 species 0 Bartonella tribocorum 817 388640 0 1 species Bartonella australis Bartonella clarridgeiae 1 species 0 56426 1494 Bartonella grahamii 0 species 1 1282 33045 38323 1316 0 1 species Bartonella henselae 1 species 0 Bartonella bacilliformis 774 1503 1318743 1404 0 species 1 Bartonella ancashensis Bartonella vinsonii species 1 0 1307 33047 Bartonella quintana species 1 0 1173 803 0 6 no rank 2645622 9861 0 1 species Bartonella sp. JB63 1933907 1620 1933912 1665 Bartonella sp. Raccoon60 species 1 0 0 1 species Bartonella sp. JB15 1933906 1621 515256 1565 Bartonella sp. 1-1C species 1 0 species 1 0 Bartonella sp. A1379B 1933910 1688 1702 1933904 Bartonella sp. WD16.2 1 species 0 41 35622 766 1 Rickettsiales order 56 0 23 family 0 1 Anaplasmataceae 17368 942 28 768 850 21 4 genus 0 1 Anaplasma 106179 352 species group 1 0 Anaplasma phagocytophilum 0 1 species 352 948 Anaplasma marginale species 1 0 253 770 Anaplasma centrale 1 species 0 224 769 0 4 genus Neorickettsia 1 1385 33993 13 950 454 Neorickettsia risticii species 1 0 428 951 0 species 1 Neorickettsia sennetsu 490 33994 species 1 0 Neorickettsia helminthoeca 6 genus 0 1 Ehrlichia 7758 943 58 6343 106178 species group 4 0 Ehrlichia muris 0 species 1 35795 1365 Ehrlichia canis species 1 0 944 1648 779 1873 0 1 species Ehrlichia ruminantium Ehrlichia chaffeensis 0 1 species 1457 945 no rank 1 0 106181 1357 Ehrlichia sp. HF 1 species 0 391036 1357 952 7347 0 tribe 8 genus 8 0 1 Wolbachia 7347 953 168 7179 2640676 0 no rank 7 1995 77038 species 1 0 Wolbachia endosymbiont of Drosophila simulans 0 species 1 Wolbachia endosymbiont of Drosophila melanogaster 931 163164 Wolbachia endosymbiont of Onchocerca volvulus species 1 0 836 77551 100901 850 1 species 0 Wolbachia endosymbiont of Onchocerca ochengi Wolbachia sp. wRi 1 species 0 66084 984 80849 834 species 1 0 Wolbachia endosymbiont of Brugia malayi 0 1 species Wolbachia endosymbiont of Cimex lectularius 749 246273 0 1 no rank 2538 1699067 Rickettsiales bacterium Ac37b species 1 0 2538 1528098 0 3 family Candidatus Midichloriaceae 1 1328881 1053 1 1 Candidatus Midichloria 2 genus 0 25 1052 411566 0 species 1 Candidatus Midichloria mitochondrii 234827 1027 0 28 family Rickettsiaceae 1 775 14622 26 2115980 1011 2 genus 2 0 1 Candidatus Phycorickettsia 2115978 1009 0 1 species Candidatus Phycorickettsia trachydisci tribe 25 0 13585 33988 1025 780 11410 1 Rickettsia genus 23 0 114292 2775 0 species group 2 785 1418 Rickettsia typhi 1 species 0 Rickettsia prowazekii 1 species 0 782 1357 2249 1129742 species group 2 0 1 species 0 Rickettsia canadensis 880 788 33990 1369 0 species 1 Rickettsia bellii 1 no rank 0 114295 1082 337479 1082 Rickettsia endosymbiont of Bemisia tabaci 1 species 0 114277 4279 0 17 species group 0 1 species Rickettsia massiliae 151 35791 47589 379 Rickettsia peacockii species 1 0 0 species 1 Rickettsia felis 699 42862 55 35794 1 species 0 Rickettsia slovaca 0 species 1 Rickettsia heilongjiangensis 226665 112 species 1 0 Rickettsia japonica 35790 82 788 787 Rickettsia australis 1 species 0 Rickettsia philipii species 1 0 93 1105106 521 786 1 species 0 Rickettsia akari 781 84 1 species 0 Rickettsia conorii 33992 193 Rickettsia rhipicephali species 1 0 128 783 1 species 0 Rickettsia rickettsii 35788 66 Rickettsia africae species 1 0 Rickettsia amblyommatis 0 1 species 204 33989 109232 525 Rickettsia monacensis 1 species 0 species 1 0 Rickettsia parkeri 82 35792 species 1 0 Rickettsia montanensis 33991 117 2175 69474 1 2 genus 0 1 Orientia species 1 0 Orientia tsutsugamushi 784 2174 2800059 734 order 2 0 2800061 734 2 family 0 734 74317 14 0 genus 2 Maricaulis 1 Maricaulis maris 0 species 1 74318 720 7 1191478 412 1 Magnetococcales 3 order 0 family 2 0 1 Magnetococcaceae 1191479 405 1 162171 404 0 1 genus Magnetococcus marinus 0 species 1 404 1124597 29312 204441 176 0 order 67 Rhodospirillales 1 family 35 0 1 Acetobacteraceae 433 10683 120 272 91914 4 0 genus 2 Asaia 1 1 species 0 Asaia bogorensis 268 91915 39 1617 1434011 Komagataeibacter 1 0 5 genus 331 1177712 0 species 1 Komagataeibacter medellinensis 265960 436 1 species 0 Komagataeibacter nataicola 0 species 1 Komagataeibacter europaeus 33995 235 Komagataeibacter xylinus 0 species 1 28448 576 Parasaccharibacter 1 0 2 genus 3 1602345 193 0 1 species Parasaccharibacter apium 190 1510841 1245 522 43 0 3 genus Acidiphilium 1 Acidiphilium cryptum 1 species 0 559 524 0 1 species Acidiphilium multivorum 62140 643 genus 2 0 1 Neoasaia 237 320496 1 Neoasaia chiangmaiensis species 1 0 320497 236 0 genus 2 Granulibacter 1 364409 609 2 Granulibacter bethesdensis 0 1 species 364410 607 8 genus 0 1 Acetobacter 3520 434 52 0 1 species Acetobacter oryzifermentans 1633874 372 0 species 1 Acetobacter persici 1076596 320 subgenus 1 0 346 151157 Acetobacter aceti 0 1 species 346 435 104102 468 species 1 0 Acetobacter tropicalis 1297 438 Acetobacter pasteurianus species 1 0 0 species 1 Acetobacter senegalensis 313 446692 65959 352 Acetobacter pomorum 0 1 species 3 genus 0 1 Roseomonas 1365 125216 35 Roseomonas gilardii 0 1 species 257708 676 2617492 654 1 no rank 0 654 2018065 Roseomonas sp. FDAARGOS_362 species 1 0 1 Gluconobacter 3 genus 0 11 441 729 species 1 0 Gluconobacter oxydans 442 490 Gluconobacter albidus 0 species 1 228 318683 1 317 153497 1 Kozakia genus 2 0 0 1 species Kozakia baliensis 316 153496 89583 459 5 0 genus 2 Gluconacetobacter 1 Gluconacetobacter diazotrophicus 0 1 species 454 33996 Rhodospirillaceae 1 0 family 31 172 41295 18453 12 1543704 548 Niveispirillum 1 0 2 genus 536 1612173 0 1 species Niveispirillum cyanobacteriorum 0 2 genus Haematospirillum 1 562 1804663 6 1549855 556 Haematospirillum jordaniae 0 1 species 1543705 893 11 genus 2 0 1 Nitrospirillum 882 28077 1 species 0 Nitrospirillum amazonense 0 2 genus Tistrella 1 1052 171436 28 1024 171437 Tistrella mobilis 0 1 species 629 1182780 1 0 2 genus Magnetospira 1 2685734 628 0 1 no rank species 1 0 Magnetospira sp. QH-2 1288970 628 0 3 genus Thalassospira 1 168934 1728 15 0 species 1 Thalassospira xiamenensis 220697 845 868 2048283 Thalassospira sp. CSC3H3 0 species 1 13134 3435 128 0 5 genus Magnetospirillum 1 762 84159 Magnetospirillum magneticum 1 species 0 0 1 species Magnetospirillum gryphiswaldense 55518 939 1606 2617991 no rank 2 0 1 species 0 Magnetospirillum sp. XM-1 1663591 768 0 species 1 Magnetospirillum sp. ME-1 838 1639348 5072 191 142 5 genus 0 1 Azospirillum Azospirillum brasilense 1 species 0 192 1611 Azospirillum thiophilum 1 species 0 528244 1014 193 1788 0 1 species Azospirillum lipoferum 1 species 0 Azospirillum humicireducens 1226968 517 0 genus 2 Pararhodospirillum 1 1612157 535 10 Pararhodospirillum photometricum 0 species 1 525 1084 Rhodospirillum 1 0 3 genus 27 1081 1518 704 1085 0 1 species Rhodospirillum rubrum Rhodospirillum centenum 0 species 1 34018 787 Candidatus Endolissoclinum 1 0 genus 2 4 2309 1263978 2305 1263979 0 species 1 Candidatus Endolissoclinum faulkneri 12 1921002 3413 1 Holosporales order 8 0 0 family 2 Caedimonadaceae 1 2100208 1253 3 1250 1509243 0 1 genus 1509244 1250 Candidatus Nucleicultrix amoebiphila 0 1 species 0 family 2 Holosporaceae 1 44746 1193 3 no rank 1 0 204454 1190 0 species 1 endosymbiont of Acanthamoeba sp. UWC8 1190 86106 12 955 1777752 Candidatus Paracaedibacteraceae 1 0 family 3 1521255 943 11 2 genus 0 1 Candidatus Paracaedibacter 91604 932 1 species 0 Candidatus Paracaedibacter acanthamoebae 1 Sphingomonadales order 82 0 138 30569 204457 0 22 family Erythrobacteraceae 1 6762 335929 83 2023 2800788 0 no rank 6 55 1111 897 Porphyrobacter 1 0 3 genus 842 2683265 0 no rank 2 1 species 0 Porphyrobacter sp. LM 6 1896196 432 Porphyrobacter HT-58-2 0 species 1 2023229 410 Erythrobacter 1 0 3 genus 102 1126 1041 Porphyrobacter neustonensis 0 1 species 1112 357 Erythrobacter litoralis 0 1 species 667 39960 963 361177 105 4 genus 0 1 Altererythrobacter 1267766 279 Altererythrobacter atlanticus 0 species 1 Altererythrobacter epoxidivorans 0 1 species 361183 297 Altererythrobacter ishigakiensis 0 1 species 476157 282 2 genus 0 596 1855416 192812 322 Erythrobacter flavus 0 species 1 266951 274 0 1 species Erythrobacter seohaensis 0 genus 2 2800681 1127 1648404 571 0 species 1 Erythrobacter atlanticus 502682 556 Erythrobacter gangjinensis species 1 0 32 746 1295327 Croceicoccus 1 0 genus 3 450378 415 1 species 0 Croceicoccus marinus 299 1348774 Croceicoccus naphthovorans 0 species 1 1 genus 0 435 2800682 Altererythrobacter namhicola 0 1 species 645517 435 2 genus 0 510 2800686 Altererythrobacter dongtanensis 0 1 species 692370 277 1982042 233 0 1 species Altererythrobacter mangrovi 0 1 genus 2800685 279 279 543877 species 1 0 Altererythrobacter marensis family 59 0 1 Sphingomonadaceae 23669 41297 280 15 genus 0 1 Sphingomonas 7890 13687 212 549 1549858 Sphingomonas taxi 0 species 1 0 1 species Sphingomonas hengshuiensis 491 1609977 0 no rank 6 3128 196159 417 1961362 0 species 1 Sphingomonas sp. NIC1 401 1938607 0 species 1 Sphingomonas sp. LM7 species 1 0 Sphingomonas sp. LK11 1009 1390395 Sphingomonas sp. MM-1 0 species 1 435 745310 species 1 0 Sphingomonas sp. KC8 426 1030157 Sphingomonas sp. Cra20 1 species 0 440 1327635 1560345 442 1 species 0 Sphingomonas panacis 0 species 2 Sphingomonas wittichii 1 1476 160791 762 0 1 strain Sphingomonas sp. DC-6 714 1283312 397260 675 Sphingomonas sanxanigenens 1 species 0 1 species 0 Sphingomonas melonis 428 152682 species 1 0 Sphingomonas koreensis 489 93064 0 1 genus 378 2709685 Sphingorhabdus flavimaris 1 species 0 378 266812 34 165696 1702 Novosphingobium 1 0 genus 5 415 2644732 1 no rank 0 0 1 species Novosphingobium sp. PP1Y 415 702113 48935 339 Novosphingobium aromaticivorans 1 species 0 Novosphingobium pentaromativorans 0 1 species 381 205844 158500 533 Novosphingobium resinovorum species 1 0 genus 10 0 1 Sphingopyxis 165697 4744 110 33050 795 0 species 1 Sphingopyxis macrogoltabida 2184 2614943 0 4 no rank 292913 349 0 1 species Sphingopyxis sp. 113P3 0 1 species Sphingopyxis sp. MG 445 1866325 515 1357916 Sphingopyxis sp. QXT-31 0 species 1 Sphingopyxis sp. LPB0140 species 1 0 1913578 875 Sphingopyxis terrae 0 1 species 33052 390 Sphingopyxis alaskensis 0 1 species 357 117207 1515612 420 species 1 0 Sphingopyxis fribergensis 267128 488 Sphingopyxis granuli 0 species 1 1649486 536 8 0 2 genus Rhizorhabdus 1 Rhizorhabdus dicambivorans 0 species 1 1850238 528 Citromicrobium 1 0 2 genus 5 398 72173 no rank 1 0 2630544 393 Citromicrobium sp. JL477 species 1 0 1634516 393 938 1434046 32 0 genus 3 Sphingorhabdus 1 906 2614947 0 no rank 2 Sphingorhabdus sp. M41 species 1 0 1806885 449 457 2077182 Sphingorhabdus sp. YGSMI21 0 1 species 2685927 408 0 1 genus 1921510 408 0 species 1 Sphingomonas sp. JJ-A5 Zymomonas 1 0 2 genus 2 541 1036 542 1034 species 1 0 Zymomonas mobilis Sphingobium 1 0 15 genus 181 165695 4901 no rank 6 0 2073 2611147 Sphingobium sp. RAC03 species 1 0 1843368 386 396 627192 Sphingobium sp. SYK-6 1 species 0 Sphingobium sp. MI1205 species 1 0 407020 316 1315974 346 0 species 1 Sphingobium sp. TKS species 1 0 Sphingobium sp. EP60837 1855519 273 1 species 0 Sphingobium sp. YBL2 484429 356 Sphingobium japonicum 0 1 species 362 332056 280 76947 Sphingobium herbicidovorans 0 species 1 Sphingobium baderi 1 species 0 1332080 242 301 46429 Sphingobium chlorophenolicum species 1 0 Sphingobium indicum 0 1 species 342 332055 0 1 species Sphingobium hydrophobicum 1673076 279 1 species 0 Sphingobium cloacae 288 120107 0 1 species Sphingobium yanoikuyae 553 13690 1 Blastomonas 2 genus 0 9 150203 458 1 no rank 0 449 2626550 1842535 449 0 species 1 Blastomonas sp. RAC04 0 9 order Pelagibacterales 1 54526 250942 46 0 family 6 Pelagibacteraceae 1 234855 1655514 110 198251 103720 26 genus 3 0 1 Candidatus Pelagibacter no rank 1 0 14676 2647897 Candidatus Pelagibacter sp. IMCC9063 0 species 1 1002672 14676 89018 198252 species 1 0 Candidatus Pelagibacter ubique 131025 1655516 2 no rank 0 116625 859653 0 1 species alpha proteobacterium HIMB5 0 1 species alpha proteobacterium HIMB59 744985 14400 genus 2 0 1 Candidatus Fonsibacter 2045213 16041 36 16005 1925548 0 1 species Candidatus Fonsibacter ubiquis 41750 204455 165 0 order 92 Rhodobacterales 1 0 family 91 Rhodobacteraceae 1 31989 41585 704 4516 265 78 0 genus 9 Paracoccus 1 Paracoccus denitrificans species 1 0 661 266 618 1077935 Paracoccus zhejiangensis 0 species 1 34003 481 Paracoccus aminophilus 0 species 1 1 no rank 0 246570 529 1529068 529 Paracoccus sp. BM15 0 species 1 Paracoccus sp. CBA4604 0 species 1 2065379 592 Paracoccus contaminans 0 1 species 1945662 380 Paracoccus yeei 1 species 0 671 147645 Paracoccus aminovorans 0 species 1 506 34004 1757 53945 23 4 genus 0 1 Octadecabacter 0 1 species Octadecabacter antarcticus 632 1217908 53946 591 Octadecabacter arcticus 0 1 species 1458307 511 Octadecabacter temperatus 1 species 0 1579315 669 3 genus 2 0 1 Halocynthiibacter 0 species 1 Halocynthiibacter arcticus 1579316 666 17 1497 97050 1 Ruegeria 3 genus 0 0 species 1 Ruegeria pomeroyi 89184 932 548 2625375 0 1 no rank Ruegeria sp. TM1040 1 species 0 292414 548 309512 644 4 genus 2 0 1 Dinoroseobacter species 1 0 Dinoroseobacter shibae 215813 640 7 367771 928 1 Marinovum genus 2 0 species 1 0 Marinovum algicola 921 42444 792 58842 2 0 2 genus Sagittula 1 2624628 790 no rank 1 0 Sagittula sp. P11 species 1 0 2009329 790 1 Confluentimicrobium genus 2 0 3 1609958 739 0 no rank 1 2643318 736 Confluentimicrobium sp. EMB200-NS6 species 1 0 1609966 736 1 159345 582 Roseibacterium 1 0 2 genus 0 1 species Roseibacterium elongatum 159346 581 263377 1539 2 genus 0 734 2640570 1 no rank 0 1 species 0 Yangia sp. CCB-MM3 1792508 734 805 1229727 1 species 0 Thiobacimonas profunda 4 genus 0 1 Labrenzia 478070 1901 79 187304 597 Labrenzia aggregata 1 species 0 1225 2648686 0 2 no rank 0 species 1 Labrenzia sp. VG12 2021862 630 0 1 species Labrenzia sp. CP4 1674922 595 genus 2 0 1 Antarctobacter 595 74032 6 1 species 0 Antarctobacter heliothermus 589 74033 0 1 genus Thalassococcus 3 436357 1 Tateyamaria 2 genus 0 8 299261 608 299262 600 0 1 species Tateyamaria omphalii 0 1 genus 2211641 612 612 245188 species 1 0 Loktanella vestfoldensis 1 Defluviimonas 2 genus 0 14 663 1097466 0 1 species Defluviimonas alba 1335048 649 Marivivens 1 0 genus 2 5 453 1759396 0 1 no rank 2622455 448 0 species 1 Marivivens sp. JLT3646 448 1920883 6 245186 1 genus 0 Loktanella 2 genus 0 1 Pelagibaca 360528 869 5 1250539 864 Pelagibaca abyssi 0 species 1 12 227873 642 Pannonibacter 1 0 2 genus 121719 630 Pannonibacter phragmitetus 0 1 species 74030 561 5 0 genus 2 Roseovarius 1 Roseovarius mucosus 0 species 1 215743 556 859 92944 14 0 genus 3 Ketogulonicigenium 1 Ketogulonicigenium vulgare 0 1 species 92945 428 Ketogulonicigenium robustum 0 1 species 417 92947 0 genus 1 509 1649279 Ruegeria mobilis 0 species 1 379347 509 920 1284657 genus 1 0 0 1 species Planktomarina temperata 1284658 920 34008 2177 34 0 4 genus Rhodovulum 1 35806 958 species 1 0 Rhodovulum sulfidophilum no rank 2 0 1185 2631432 0 species 1 Rhodovulum sp. P5 1564506 524 308754 661 Rhodovulum sp. MB263 species 1 0 1060 3035 40 5 genus 0 1 Rhodobacter 0 species 1 Rhodobacter capsulatus 456 1061 1163 196779 0 no rank 2 species 1 0 Rhodobacter sp. LPB0142 578 1850250 0 species 1 Rhodobacter sp. CZR27 2033869 585 1 species 0 Rhodobacter sphaeroides 1376 1063 3 555 119541 1 Rhodobaca genus 2 0 1 species 0 Rhodobaca barguzinensis 441209 552 60136 1344 9 0 3 genus Sulfitobacter 1 0 1 no rank 775 196795 Sulfitobacter sp. AM1-D1 0 1 species 775 1917485 1 species 0 Sulfitobacter pseudonitzschiae 1402135 560 0 1 genus 285107 539 1915078 539 0 1 species Thioclava nitratireducens 0 no rank 2 950 58840 1 species 0 Rhodobacteraceae bacterium QY30 467 2033435 1904441 483 Rhodobacteraceae bacterium species 1 0 28 875170 2534 1 Celeribacter 5 genus 0 Celeribacter indicus 1 species 0 1208324 775 1411902 602 Celeribacter manganoxidans 0 species 1 0 1 species Celeribacter ethanolicus 1758178 563 1397108 566 Celeribacter marinus 1 species 0 2433 1226 15 genus 3 0 1 Roseobacter 2434 579 species 1 0 Roseobacter denitrificans 632 42443 Roseobacter litoralis 0 1 species 1 Phaeobacter 5 genus 0 66 4354 302485 species 1 0 Phaeobacter inhibens 221822 1605 0 species 1 Phaeobacter piscinae 1043 1580596 60890 1208 Phaeobacter gallaeciensis species 1 0 1844006 432 species 1 0 Phaeobacter porticola 0 2 genus Jannaschia 1 188905 600 3 2645469 597 0 1 no rank 0 1 species Jannaschia sp. CCS1 597 290400 1 191028 703 Leisingera 1 0 genus 2 0 1 species Leisingera methylohalidivorans 133924 702 class 6 0 1065 1807140 225057 1065 41 order 6 0 1 Acidithiobacillales family 5 0 1 Acidithiobacillaceae 225058 1024 28 Acidithiobacillus 1 0 4 genus 33 996 119977 920 283 species 1 0 Acidithiobacillus ferrooxidans 160808 299 1 species 0 Acidithiobacillus ferrivorans 0 species 1 Acidithiobacillus caldus 33059 381 580370 598 1 class 6 0 1 Zetaproteobacteria 597 580371 10 order 5 0 1 Mariprofundales 0 family 4 Mariprofundaceae 1 587 580372 7 0 genus 3 Mariprofundus 1 580 377315 27 269 1921086 Mariprofundus aestuarium 1 species 0 284 1921087 species 1 0 Mariprofundus ferrinatatus 0 11 class Oligoflexia 1 1553900 3857 6 1671 213481 5 5 order 0 1 Bdellovibrionales 15 213483 1666 1 Bdellovibrionaceae 4 family 0 genus 3 0 1 Bdellovibrio 958 1651 3 959 1177 Bdellovibrio bacteriovorus 0 species 1 471 453816 0 1 species Bdellovibrio exovorus 5 order 0 1 Bacteriovoracales 2180 2024979 8 0 2 family Bacteriovoracaceae 1 648 263369 1 647 146784 0 genus 1 647 960 Bacteriovorax stolpii 0 1 species 1524 1652132 0 2 family Halobacteriovorax 1 0 2 genus 7 1524 1652133 97084 1517 Halobacteriovorax marinus 0 species 1 151603 28216 180 351 class 0 1 Betaproteobacteria 0 order 36 Neisseriales 1 8811 206351 108 Neisseriaceae 1 0 22 family 31 481 5423 Simonsiella 1 0 2 genus 2 428 71 0 species 1 Simonsiella muelleri 426 72 0 1 genus 538 224 224 539 1 species 0 Eikenella corrodens 0 1 no rank 421605 905 2052837 905 Neisseriaceae bacterium DSM 100970 0 species 1 0 2 genus Snodgrassella 1 413 1193515 2 411 1196083 0 species 1 Snodgrassella alvi genus 12 0 1 Neisseria 2748 482 58 2 no rank 0 402 2623750 1853276 196 Neisseria sp. 10022 0 1 species 206 655307 Neisseria sp. KEM232 0 1 species 326523 232 Neisseria zoodegmatis 0 1 species Neisseria mucosa 0 species 1 488 130 1 species 0 Neisseria lactamica 486 222 Neisseria sp. 10023 0 1 species 1853278 186 485 222 Neisseria gonorrhoeae species 1 0 487 684 0 species 1 Neisseria meningitidis 495 205 Neisseria elongata species 1 0 Neisseria sicca 0 species 1 130 490 277 28091 0 1 species Neisseria weaveri Vitreoscilla 1 0 3 genus 8 674 59 1 species 0 Vitreoscilla filiformis 63 223 0 no rank 1 2627922 443 443 96942 Vitreoscilla sp. C1 0 1 species 1499392 3280 47 0 family 13 Chromobacteriaceae 1 1 Laribacter 2 genus 0 6 168470 318 168471 312 Laribacter hongkongensis 0 1 species 1 Pseudogulbenkiania genus 2 0 10 568394 439 0 1 no rank 2642558 429 748280 429 0 species 1 Pseudogulbenkiania sp. NH8B 885864 462 8 0 genus 2 Jeongeupia 1 0 no rank 1 454 2619593 1906741 454 Jeongeupia sp. USM3 0 1 species 1746 90153 no rank 4 0 44 1746 535 1 Chromobacterium genus 4 0 0 1 species Chromobacterium vaccinii 706 1108595 480 2641838 0 no rank 1 1 species 0 Chromobacterium sp. ATCC 53434 480 2059672 1 species 0 Chromobacterium violaceum 536 516 5 268 187 1 Aquaspirillum genus 2 0 263 2620219 0 1 no rank 0 1 species Aquaspirillum sp. LM1 263 1938604 9321 32003 76 order 44 0 1 Nitrosomonadales 539 2772226 family 4 0 2 210 1778653 1 Sulfuriferula genus 2 0 1 no rank 0 208 2637784 208 1985873 Sulfuriferula sp. AH1 species 1 0 Sulfuricella 1 0 genus 2 4 329 935200 649841 325 Sulfuricella denitrificans species 1 0 0 family 14 Methylophilaceae 1 32011 3339 32 19 456 81682 1 Methylovorus genus 3 0 209 2634027 0 1 no rank 887061 209 0 1 species Methylovorus sp. MP688 0 species 1 Methylovorus glucosotrophus 266009 228 3 genus 0 1 Methylotenera 359407 914 6 338 359408 Methylotenera mobilis 1 species 0 0 species 1 Methylotenera versatilis 570 1055487 10 1679002 1498 Candidatus Methylopumilus 1 0 genus 3 1112 1581557 species 1 0 Candidatus Methylopumilus planktonicus Candidatus Methylopumilus turicensis species 1 0 1581680 376 1 Methylobacillus genus 2 0 5 404 223 Methylobacillus flagellatus species 1 0 405 218 genus 2 0 1 Methylophilus 216 16 4 0 no rank 1 2630143 212 1662285 212 Methylophilus sp. TWE2 0 1 species 4 367 2008790 1 Thiobacillaceae 3 family 0 363 919 5 0 2 genus Thiobacillus 1 358 36861 0 species 1 Thiobacillus denitrificans Sterolibacteriaceae 1 0 family 5 17 728 2008793 375 1054211 4 0 genus 2 Sulfuritalea 1 0 species 1 Sulfuritalea hydrogenivorans 748811 371 378210 336 4 genus 2 0 1 Methyloversatilis no rank 1 0 2639971 332 Methyloversatilis sp. RAC08 0 species 1 332 1842540 3757 206379 22 family 12 0 1 Nitrosomonadaceae 0 genus 7 Nitrosomonas 1 914 3134 31 Nitrosomonas eutropha species 1 0 916 438 44577 577 species 1 0 Nitrosomonas ureae 44574 664 1 species 0 Nitrosomonas communis Nitrosomonas europaea species 1 0 293 915 no rank 2 0 2609265 1131 0 species 1 Nitrosomonas sp. AL212 595 153948 261292 536 Nitrosomonas sp. Is79A3 species 1 0 5 35798 601 Nitrosospira 1 0 4 genus 186 35799 Nitrosospira briensis 1 species 0 212 1231 Nitrosospira multiformis 0 species 1 198 1288494 Nitrosospira lacus 1 species 0 17 515 90627 1 Gallionellaceae family 5 0 0 2 genus Sideroxydans 1 253 314343 7 246 63745 0 1 species Sideroxydans lithotrophicus 96 245 5 0 genus 2 Gallionella 1 0 species 1 Gallionella capsiferriformans 370405 240 22 order 0 1 Rhodocyclales 6025 206389 71 1 Zoogloeaceae 12 family 0 101 2008794 4453 5 genus 0 1 Azoarcus 12960 1988 44 460 418699 species 1 0 Azoarcus olearius 442 2067960 0 1 species Azoarcus sp. SY39 0 no rank 2 2629479 1042 0 1 species Azoarcus sp. CIB 198107 535 Azoarcus sp. KH32C 1 species 0 507 748247 Thauera 1 0 6 genus 60 2364 33057 1045 2609274 2 no rank 0 574 85643 0 1 species Thauera sp. MZ1T Thauera sp. K11 0 1 species 2005884 471 1 species 0 Thauera aromatica 375 59405 1134435 434 Thauera humireducens species 1 0 0 1 species Thauera chlorobenzoica 450 96773 2008795 346 9 3 family 0 1 Azonexaceae 8 337 73029 Dechloromonas 1 0 2 genus 259537 329 0 1 species Dechloromonas aromatica 21 75787 1155 Rhodocyclaceae 1 0 family 6 11 146937 332 Azospira 1 0 2 genus Azospira oryzae 0 species 1 321 146939 2 genus 0 1 Aromatoleum 551759 487 10 Aromatoleum aromaticum species 1 0 551760 477 0 1 no rank 315 75788 Rhodocyclaceae bacterium species 1 0 315 1898103 928 119057 80840 1 Burkholderiales 233 order 0 80841 542 2 no rank 0 1469502 267 Burkholderiales bacterium GJ-E10 1 species 0 275 1834205 Burkholderiales bacterium YL45 species 1 0 0 family 57 Comamonadaceae 1 80864 20480 211 2 352450 253 Simplicispira 1 0 2 genus 1 species 0 Simplicispira sp. SC1-8 2109915 251 Melaminivora 1 0 genus 2 10 1649468 335 2641902 325 0 1 no rank Melaminivora sp. SC2-9 species 1 0 325 2109913 238749 294 1 genus 0 294 1546149 Diaphorobacter polyhydroxybutyrativorans 0 species 1 80865 2297 56 0 5 genus Delftia 1 2613839 1209 2 no rank 0 1920191 528 0 1 species Delftia sp. HK171 species 1 0 Delftia sp. Cs1-4 681 742013 Delftia tsuruhatensis species 1 0 180282 501 species 1 0 Delftia acidovorans 80866 531 1 genus 0 1436289 222 222 1436290 0 1 species Candidatus Symbiobacter mobilis 52972 1531 11 genus 3 0 1 Polaromonas 2638319 1004 1 no rank 0 species 1 0 Polaromonas sp. JS666 296591 1004 516 216465 1 species 0 Polaromonas naphthalenivorans 5 219181 590 1 Ottowia 3 genus 0 375 2109914 0 species 1 Ottowia sp. KADR8-3 210 2645081 no rank 1 0 Ottowia sp. oral taxon 894 1 species 0 1658672 210 1 Alicycliphilus 2 genus 0 4 201096 440 1 species 0 Alicycliphilus denitrificans 179636 436 49 4282 34072 Variovorax 1 0 genus 5 0 species 1 Variovorax boronicumulans 644 436515 663243 1359 0 2 no rank 749 2126319 0 1 species Variovorax sp. PMC12 1 species 0 Variovorax sp. PAMC 28711 610 1795631 2230 34073 0 species 1 Variovorax paradoxus genus 4 0 1 Comamonas 283 1837 11 Comamonas testosteroni 0 species 1 285 636 Comamonas kerstersii 0 1 species 225992 529 661 1082851 1 species 0 Comamonas serinivorans 10 28065 1369 Rhodoferax 1 0 genus 5 Rhodoferax koreense 0 species 1 504 1842727 0 1 species Rhodoferax antarcticus 81479 297 268 1484693 Rhodoferax saidenbachensis 0 species 1 192843 290 Rhodoferax ferrireducens 1 species 0 Acidovorax 1 0 9 genus 113 12916 2827 0 species 1 Acidovorax avenae 513 80867 0 1 species Acidovorax sp. NA3 553814 251 Acidovorax citrulli 0 1 species 80869 393 1289 2684926 0 4 no rank 1858609 428 0 species 1 Acidovorax sp. T1 species 1 0 Acidovorax sp. KKS102 358220 295 Acidovorax sp. JS42 species 1 0 232721 281 1842533 285 species 1 0 Acidovorax sp. RAC01 268 721785 Acidovorax ebreus 1 species 0 6 174951 888 1 Ramlibacter genus 2 0 94132 882 Ramlibacter tataouinensis 1 species 0 Verminephrobacter 1 0 genus 2 2 616 364316 364317 614 species 1 0 Verminephrobacter eiseniae 3 genus 0 1 Limnohabitans 665874 436 4 2626134 432 2 no rank 0 0 species 1 Limnohabitans sp. 63ED37-2 1678128 254 species 1 0 Limnohabitans sp. 103DPR2 178 1678129 0 4 genus Hydrogenophaga 1 47420 1107 9 0 no rank 2 809 2610897 0 species 1 Hydrogenophaga sp. PBC 795665 417 392 1842537 Hydrogenophaga sp. RAC07 0 species 1 Hydrogenophaga crassostreae species 1 0 1763535 289 0 genus 2 2490452 633 Comamonadaceae bacterium B1 0 1 species 329 1458426 304 1458425 species 1 0 Comamonadaceae bacterium A1 2678886 312 0 1 genus 312 2116657 Melaminivora sp. SC2-7 1 species 0 0 family 44 Alcaligenaceae 1 506 17149 69 genus 2 0 1 Paenalcaligenes 414 1100891 15 643674 399 0 1 species Paenalcaligenes hominis genus 17 0 1 Bordetella 517 6772 129 262 35814 Bordetella holmesii 1 species 0 520 502 Bordetella pertussis 0 species 1 463024 516 Bordetella genomosp. 6 1 species 0 558 519 Bordetella parapertussis 0 species 1 0 species 1 Bordetella avium 521 194 0 species 1 Bordetella bronchiseptica 935 518 372 103855 Bordetella hinzii 0 species 1 0 no rank 1 2630031 336 0 species 1 Bordetella sp. H567 336 1697043 463014 340 Bordetella flabilis species 1 0 463040 442 Bordetella genomosp. 13 1 species 0 324 1331258 Bordetella pseudohinzii 1 species 0 Bordetella petrii 0 1 species 94624 346 0 1 species Bordetella trematum 123899 333 1416803 324 0 species 1 Bordetella genomosp. 9 1416806 385 Bordetella genomosp. 8 0 species 1 Bordetella bronchialis 1 species 0 474 463025 2 357 1921582 1 Orrella 2 genus 0 355 1851544 0 species 1 Orrella dioscoreae Pusillimonas 1 0 genus 2 4 332 305976 1 no rank 0 328 2640016 Pusillimonas sp. T7-7 0 1 species 328 1007105 290425 573 11 genus 3 0 1 Advenella 303 302406 Advenella mimigardefordensis 0 species 1 0 1 species Advenella kashmirensis 259 310575 Castellaniella 1 0 genus 2 2 359336 329 327 75697 Castellaniella defragrans species 1 0 1725 29574 3 0 genus 3 Taylorella 1 29575 908 1 species 0 Taylorella equigenitalis 1 species 0 Taylorella asinigenitalis 84590 814 0 genus 2 Alcaligenes 1 507 920 9 Alcaligenes faecalis 0 1 species 911 511 Achromobacter 1 0 6 genus 86 4850 222 species 1 0 Achromobacter xylosoxidans 85698 1879 217204 468 0 1 species Achromobacter insolitus Achromobacter denitrificans 1 species 0 32002 1030 217203 825 Achromobacter spanius 1 species 0 0 1 no rank 562 2626865 species 1 0 Achromobacter sp. AONIH1 1758194 562 2 337 90243 1 Oligella 2 genus 0 90245 335 0 1 species Oligella urethralis 0 genus 2 Basilea 1 471 1472344 1 1 species 0 Basilea psittacipulmonis 470 1472345 0 17 no rank 224471 5770 752 413882 species 1 0 [Polyangium] brachysporum 673 212743 11 0 genus 2 Rhizobacter 1 946333 662 Rhizobacter gummiphilus 1 species 0 1 Rubrivivax genus 2 0 16 729 28067 Rubrivivax gelatinosus 0 species 1 28068 713 4 65047 670 1 Mitsuaria 2 genus 0 2648776 666 1 no rank 0 Mitsuaria sp. 7 0 1 species 666 1658665 10 316612 499 Methylibium 1 0 2 genus species 1 0 Methylibium petroleiphilum 489 105560 Thiomonas 1 0 2 genus 17 541 32012 524 926 0 species 1 Thiomonas intermedia Roseateles 1 0 genus 2 8 93681 738 0 1 species Roseateles depolymerans 730 76731 Leptothrix 1 0 genus 2 20 88 594 0 species 1 Leptothrix cholodnii 574 34029 5 318147 574 Paucibacter 1 0 2 genus 0 1 no rank 569 2642959 1 species 0 Paucibacter sp. KCTC 42545 569 1768242 family 84 0 1 Burkholderiaceae 119060 64295 272 genus 12 0 1 Paraburkholderia 1822464 7533 110 1 species 0 Paraburkholderia sprentiae 948107 571 species 1 0 Paraburkholderia hospita 744 169430 632 36873 species 1 0 Paraburkholderia xenovorans 252970 568 species 1 0 Paraburkholderia phenoliruptrix 0 1 no rank 585 2615204 585 1926494 0 species 1 Paraburkholderia sp. SOS3 Paraburkholderia terrae species 1 0 600 311230 75105 1280 Paraburkholderia caribensis species 1 0 630 2026199 Paraburkholderia aromaticivorans 0 1 species Paraburkholderia fungorum species 1 0 512 134537 1 species 0 Paraburkholderia phymatum 148447 591 species 1 0 Paraburkholderia phytofirmans 261302 710 0 9 genus Cupriavidus 1 106589 6813 127 species 1 0 Cupriavidus metallidurans 1053 119219 82541 538 Cupriavidus gilardii 0 species 1 Cupriavidus pinatubonensis 0 species 1 510 248026 Cupriavidus basilensis 1 species 0 964 68895 Cupriavidus necator 0 species 1 859 106590 2640874 1935 no rank 2 0 0 species 1 Cupriavidus sp. USMAHM13 885 1389192 Cupriavidus sp. USMAA2-4 0 1 species 876364 1050 367825 827 0 1 species Cupriavidus sp. USMAA1020 45 4013 48736 1 Ralstonia 5 genus 0 1 species 0 Ralstonia insidiosa 532 190721 0 1 species Ralstonia solanacearum 2038 305 0 species 1 Ralstonia pickettii 836 329 0 1 species Ralstonia mannitolilytica 105219 562 Polynucleobacter 1 0 4 genus 15 44013 1495 428 1835254 0 species 1 Polynucleobacter duraquae 722 576611 1 species 0 Polynucleobacter asymbioticus Polynucleobacter necessarius 1 species 0 330 576610 genus 1 0 683 1827195 683 758793 1 species 0 Burkholderia sp. RPE64 Burkholderia 1 0 41 genus 1212 32008 38521 337 1370 1 species 0 Burkholderia glumae 1241 28095 Burkholderia gladioli 0 1 species 19 species group 0 87882 18081 Burkholderia ubonensis 0 1 species 101571 1698 Burkholderia lata 1 species 0 1498 482957 464 60550 Burkholderia pyrrocinia 1 species 0 633 488446 species 1 0 Burkholderia latens 0 1 species Burkholderia pseudomultivorans 487 1207504 60552 1006 Burkholderia vietnamiensis 0 1 species Burkholderia stagnalis 0 1 species 1503054 541 Burkholderia stabilis 0 1 species 95485 968 0 species 1 Burkholderia metallica 492 488729 399 1503055 1 species 0 Burkholderia territorii species 1 0 Burkholderia ambifaria 152480 750 0 species 1 Burkholderia cenocepacia 95486 2482 [Pseudomonas] mesoacidophila 0 1 species 265293 530 2988 292 0 1 species Burkholderia cepacia species 1 0 Burkholderia dolosa 152500 477 1 species 0 Burkholderia diffusa 488732 391 Burkholderia seminalis species 1 0 488731 516 Burkholderia contaminans 0 1 species 488447 543 0 species 1 Burkholderia multivorans 87883 1218 761 41899 1 species 0 Burkholderia plantarii 0 no rank 11 2613784 5097 species 1 0 Burkholderia sp. PAMC 28687 1795874 269 Burkholderia sp. CCGE1001 0 species 1 640510 535 1678678 558 species 1 0 Burkholderia sp. HB1 502 640512 1 species 0 Burkholderia sp. CCGE1003 428 1740162 0 species 1 Burkholderia sp. Bp5365 1097668 611 Burkholderia sp. YI23 0 1 species Burkholderia sp. Bp7605 0 1 species 382 1740163 species 1 0 Burkholderia sp. 2002721687 1468409 423 species 1 0 Burkholderia sp. KJ006 416344 428 1 species 0 Burkholderia sp. RPE67 758796 683 0 species 1 Burkholderia sp. PAMC 26561 1795043 278 0 7 species group 10759 111527 342113 887 Burkholderia oklahomensis species 1 0 28450 5004 0 1 species Burkholderia pseudomallei 1102 13373 Burkholderia mallei 0 species 1 species 1 0 Burkholderia sp. MSMB0852 901 1637841 57975 1562 0 1 species Burkholderia thailandensis 1 species 0 Burkholderia sp. MSMB0266 619 1637837 684 1637831 Burkholderia sp. MSMB617WGS 1 species 0 1 genus 0 2571159 262 species 1 0 Paraburkholderia rhizoxinica 412963 262 4703 93217 74 genus 10 0 1 Pandoraea species 1 0 Pandoraea norimbergensis 533 93219 379 93218 Pandoraea apista species 1 0 species 1 0 Pandoraea pulmonicola 1111 93221 Pandoraea oxalativorans 0 1 species 468 573737 1 species 0 Pandoraea sputorum 334 93222 0 1 species Pandoraea thiooxydans 445709 357 655 93220 0 species 1 Pandoraea pnomenusa 405 656179 Pandoraea faecigallinarum species 1 0 Pandoraea vervacti 1 species 0 656178 387 75682 9893 67 28 family 0 1 Oxalobacteraceae Janthinobacterium 1 0 7 genus 39 2386 29580 368607 464 Janthinobacterium svalbardensis species 1 0 403 55508 Janthinobacterium agaricidamnosum 0 species 1 0 no rank 4 2610881 1480 Janthinobacterium sp. B9-8 0 1 species 1236179 366 Janthinobacterium sp. LM6 species 1 0 388 1938606 Janthinobacterium sp. Marseille species 1 0 261 375286 Janthinobacterium sp. 1_2014MBL_MicDiv 0 species 1 1644131 465 Collimonas 1 0 4 genus 48 202907 1460 0 1 species Collimonas fungivorans 447 158899 279058 570 1 species 0 Collimonas arenae Collimonas pratensis 0 species 1 395 279113 genus 6 0 1 Herbaspirillum 963 2590 42 92645 475 0 1 species Herbaspirillum frisingense Herbaspirillum seropedicae 0 species 1 964 625 80842 346 1 species 0 Herbaspirillum rubrisubalbicans 705 341045 1 species 0 Herbaspirillum hiltneri 1 no rank 0 397 2624150 Herbaspirillum sp. meg3 1 species 0 397 2025949 2580 149698 79 0 genus 6 Massilia 1 0 species 1 Massilia sp. ZMN-3 522 2072590 no rank 2 0 2609279 947 1678028 456 Massilia sp. NR 4-1 species 1 0 1707785 491 1 species 0 Massilia sp. WG5 1141883 566 Massilia putida 1 species 0 1 species 0 Massilia sp. B2 2045208 466 0 1 genus 232 846 847 232 1 species 0 Oxalobacter formigenes 3 578 303379 1 Herminiimonas genus 3 0 1809410 303 species 1 0 Herminiimonas arsenitoxidans 1 species 0 Herminiimonas arsenicoxydans 272 204773 0 2 no rank 33809 1009 1904640 556 species 1 0 Betaproteobacteria bacterium GR16-43 0 1 species beta proteobacterium CB 543913 453 119066 7200 no rank 13 0 1381133 1010 1 2 genus 0 1 Candidatus Profftella 1009 669502 0 1 species Candidatus Profftella armatura 1 189384 104 Candidatus Tremblaya 1 0 2 genus 0 1 species Candidatus Tremblaya princeps 189385 103 1 Candidatus Accumulibacter 2 genus 0 3 415 327159 1 species 0 Candidatus Accumulibacter phosphatis 412 327160 1 genus 0 292 1301080 1160784 292 Candidatus Nasuia deltocephalinicola 0 1 species 34 5379 33055 1 Kinetoplastibacterium 6 genus 0 1456 994692 0 species 1 Candidatus Kinetoplastibacterium desouzaii Candidatus Kinetoplastibacterium crithidii 0 species 1 1184 33056 233181 919 Kinetoplastibacterium blastocrithidii 0 species 1 994696 926 Candidatus Kinetoplastibacterium oncopeltii 0 1 species Candidatus Kinetoplastibacterium galatii 0 1 species 860 994695 644 1930617 0 phylum 5 Calditrichae 1 0 class 5 5 644 1962850 1962852 639 8 4 order 0 1 Calditrichales 631 1962854 1 0 3 family Calditrichaceae 1 630 187144 2 0 2 genus Caldithrix 1 Caldithrix abyssi 1 species 0 628 187145 9 phylum 0 3957 200930 Deferribacteres 1 0 9 class 12 3957 68337 8 order 0 1 Deferribacterales 191393 3945 17 1 Deferribacteraceae 7 family 0 18 3928 191394 1 Denitrovibrio genus 2 0 14 117999 519 0 species 1 Denitrovibrio acetiphilus 505 118000 0 1 genus 545865 777 777 477976 Calditerrivibrio nitroreducens 0 species 1 1 Deferribacter genus 2 0 3 53572 1935 197162 1932 Deferribacter desulfuricans species 1 0 2351 679 0 genus 1 0 1 species Flexistipes sinusarabici 2352 679 phylum 25 0 32066 33826 48 33826 203490 Fusobacteriia 1 0 25 class 1 Fusobacteriales order 24 0 58 33778 203491 27 25679 203492 Fusobacteriaceae 1 0 11 family 1 Fusobacterium genus 9 0 105 848 24727 species 1 0 Fusobacterium ulcerans 1592 861 860 4750 Fusobacterium periodonticum 0 species 1 species 1 0 Fusobacterium mortiferum 850 1503 0 species 1 Fusobacterium hwasookii 1583098 2819 856 3043 Fusobacterium varium 0 1 species 9460 851 Fusobacterium nucleatum 1 species 0 species 1 0 Fusobacterium necrophorum 580 859 849 875 0 1 species Fusobacterium gonidiaformans 167639 925 1 genus 0 Ilyobacter polytropus 1 species 0 925 167642 1129771 8041 13 0 12 family Leptotrichiaceae 1 genus 5 0 1 Leptotrichia 32067 4518 10 2633022 3359 0 3 no rank 712368 1257 Leptotrichia sp. oral taxon 498 species 1 0 1153 1785996 0 1 species Leptotrichia sp. oral taxon 847 712357 949 Leptotrichia sp. oral taxon 212 species 1 0 40542 1149 Leptotrichia buccalis 0 species 1 1 32068 1027 Sebaldella 1 0 2 genus species 1 0 Sebaldella termitidis 1026 826 1 34104 1517 1 Streptobacillus genus 2 0 0 species 1 Streptobacillus moniliformis 1516 34105 168808 966 2 2 genus 0 1 Sneathia Sneathia amnii 1 species 0 187101 964 0 298 superkingdom 50829 2157 8700 1783275 59 clade 0 51967 51 phylum 1 0 51 498845 genus 1 0 species 1 0 Candidatus Korarchaeum cryptofilum 51 498846 28889 4093 0 42 phylum 0 class 42 4093 183924 2 2266 665 Thermoproteales 1 0 13 order 2267 439 0 family 7 164450 187 0 2 genus Vulcanisaeta distributa 0 1 species 82 164451 105 985052 Vulcanisaeta moutnovskia 0 1 species 76886 96 0 1 genus Caldivirga maquilingensis 0 1 species 96 76887 genus 1 0 45 2276 1 species 0 Pyrobaculum islandicum 45 2277 2 111 2270 1 Thermoproteus genus 3 0 Thermoproteus uzoniensis 0 species 1 184117 64 2271 45 0 1 species Thermoproteus tenax 114378 224 0 5 family 1 Thermofilum 5 genus 0 1 224 2268 2269 61 0 1 species Thermofilum pendens 1483572 59 Thermofilum carboxyditrophus 0 species 1 56 1365176 Thermofilum adornatus species 1 0 47 1550241 0 species 1 Thermofilum uzonense 464 871006 0 order 3 family 2 0 436 255472 2 200414 436 Caldisphaera 1 0 2 genus 0 species 1 Caldisphaera lagunensis 200415 434 28 871007 family 1 0 105850 28 1 genus 0 0 species 1 Acidilobus saccharovorans 242703 28 1 Desulfurococcales 15 order 0 1 758 114380 1 Desulfurococcaceae family 9 0 4 2272 547 54258 96 0 genus 2 54259 43 0 1 species Ignicoccus islandicus 160233 53 species 1 0 Ignicoccus hospitalis 37 477695 0 1 genus Thermogladius calderae 0 species 1 37 1200300 genus 1 0 54253 45 54254 45 0 1 species Thermosphaera aggregans 307 2279 genus 2 0 species 1 0 Staphylothermus hellenicus 84599 126 2280 181 Staphylothermus marinus 1 species 0 0 2 genus 2273 58 0 1 species Desulfurococcus mucosus 12 2275 46 94694 0 1 species Desulfurococcus amylolyticus 210 2307 0 family 5 1 Pyrodictium 2 genus 0 3 60 2308 1273541 57 1 species 0 Pyrodictium delaneyi 0 genus 1 54251 64 Pyrolobus fumarii 0 species 1 64 54252 0 genus 2 Hyperthermus 1 54247 86 1 0 1 species Hyperthermus butylicus 85 54248 0 11 order Sulfolobales 1 2281 2206 4 118883 2202 family 10 0 0 genus 1 2100760 306 0 species 1 Sulfolobus solfataricus 2287 306 328 12914 genus 1 0 328 563177 Acidianus hospitalis 0 1 species 14 956 2284 Sulfolobus 1 0 4 genus 43080 479 0 species 1 Sulfolobus islandicus 266 2641160 no rank 1 0 266 1891280 Sulfolobus sp. A20 0 1 species Sulfolobus acidocaldarius 0 species 1 197 2285 1 41980 189 1 Metallosphaera genus 3 0 78 43687 species 1 0 Metallosphaera sedula species 1 0 Metallosphaera cuprina 110 1006005 0 genus 1 69655 423 Sulfolobus tokodaii 0 species 1 423 111955 0 16 phylum 4556 651137 2 1164 1643678 1 Nitrososphaeria 4 class 0 order 1 0 1968909 648 1968910 648 family 1 0 0 genus 1 498374 648 2045011 648 1 species 0 Candidatus Nitrosocaldus islandicus 4 514 1033996 Nitrososphaerales 1 0 order 2 510 1033997 0 1 family 0 genus 1 497726 510 1034015 510 species 1 0 Nitrososphaera viennensis no rank 5 0 651142 861 0 2 genus Candidatus Nitrosopelagicus 1 1593364 585 5 580 1410606 0 species 1 Candidatus Nitrosopelagicus brevis 0 3 genus Candidatus Nitrosotenuis 1 276 1825023 1 Candidatus Nitrosotenuis cloacae 0 1 species 1603555 140 0 species 1 Candidatus Nitrosotenuis sp. AQ6f 1846278 135 4 31932 2531 Nitrosopumilales 1 0 7 order 0 6 family Nitrosopumilaceae 1 2527 338190 3 genus 2 0 1 Candidatus Nitrosomarinus 854 1993653 4 Candidatus Nitrosomarinus catalina species 1 0 1898749 850 1670 338191 4 3 genus 0 1 Nitrosopumilus 1 species 0 Candidatus Nitrosopumilus adriaticus 1012 1580092 species 1 0 Candidatus Nitrosopumilus sediminis 654 1229909 0 1 clade 1783276 65 1801631 65 1 phylum 0 0 genus 1 2490204 65 Candidatus Micrarchaeota archaeon Mia14 0 species 1 1920749 65 2 42064 28890 1 Euryarchaeota 238 phylum 0 0 23 clade 2283796 3469 2 183967 3106 Thermoplasmata 1 0 class 20 order 4 0 1235850 1131 13 851 1577788 1 Methanomassiliicoccaceae family 3 0 283 1607807 0 1 genus 0 1 species Candidatus Methanoplasma termitum 283 1577791 0 genus 1 1080709 555 1406512 555 Candidatus Methanomassiliicoccus intestinalis 1 species 0 280 2517203 family 1 0 280 1291539 0 1 genus 1291540 280 species 1 0 Candidatus Methanomethylophilus alvus 1 no rank 0 298 1234666 1495144 298 methanogenic archaeon ISO4-H5 1 species 0 Thermoplasmatales 1 0 14 order 4 1675 2301 0 1 no rank 309 1919231 1054217 309 Thermoplasmatales archaeon BRNA1 0 species 1 family 3 0 1 Picrophilaceae 263 46630 2 0 2 genus Picrophilus 1 46631 261 6 0 1 species Picrophilus torridus 82076 255 0 family 3 334 46659 10 334 2302 Thermoplasma 1 0 3 genus 147 2303 Thermoplasma acidophilum species 1 0 0 1 species Thermoplasma volcanium 50339 177 0 family 3 455 90142 455 74968 7 genus 3 0 1 Ferroplasma Ferroplasma acidiphilum 0 species 1 74969 225 Ferroplasma acidarmanus 1 species 0 97393 223 1 310 1747776 Cuniculiplasmataceae 1 0 family 3 309 1747777 8 0 2 genus Cuniculiplasma 1 1 species 0 Cuniculiplasma divulgatum 301 1673428 3 clade 0 1803510 363 3 genus 0 1 Aciduliprofundum 379546 363 9 0 species 1 Aciduliprofundum boonei 217 379547 1 no rank 0 137 2633939 Aciduliprofundum sp. MAR08-339 0 1 species 137 673860 2283794 12978 0 45 clade 1 Methanobacteria class 26 0 9 6239 183925 1 Methanobacteriales 25 order 0 8 2158 6230 2 family 0 1 Methanothermaceae 2178 399 1 2179 398 1 genus 0 Methanothermus fervidus 1 species 0 398 2180 5823 2159 7 0 22 family Methanobacteriaceae 1 2172 3096 4 0 genus 7 Methanobrevibacter 1 83816 413 Methanobrevibacter ruminantium 0 species 1 550 230361 Methanobrevibacter millerae 1 species 0 0 2 no rank 862 2638681 224719 483 Methanobrevibacter sp. AbM4 0 1 species 379 1609968 Methanobrevibacter sp. YE315 1 species 0 294671 675 species 1 0 Methanobrevibacter olleyae Methanobrevibacter smithii 1 species 0 592 2173 1 genus 0 600 2316 2317 600 species 1 0 Methanosphaera stadtmanae 425 145260 9 0 genus 5 Methanothermobacter 1 94 145261 species 1 0 Methanothermobacter wolfeii 0 1 no rank 100 2631116 1 species 0 Methanothermobacter sp. CaT2 100 866790 80 145262 0 species 1 Methanothermobacter thermautotrophicus 0 species 1 Methanothermobacter marburgensis 145263 142 0 8 genus Methanobacterium 1 1695 2160 22 313 877455 Methanobacterium lacus 0 1 species 242 2162 Methanobacterium formicicum 0 1 species 59277 179 1 species 0 Methanobacterium subterraneum Methanobacterium congolense 0 species 1 260 118062 373 2627676 no rank 2 0 187 1911685 Methanobacterium sp. MZ-A1 1 species 0 186 1379702 1 species 0 Methanobacterium sp. MB1 868131 306 Methanobacterium paludis 0 species 1 6739 183939 6 0 class 19 Methanococci 1 0 order 18 Methanococcales 1 6733 2182 8 0 10 family Methanocaldococcaceae 1 196117 3037 15 Methanotorris 1 0 2 genus 3 453 196119 Methanotorris igneus 1 species 0 450 2189 29 196118 2569 1 Methanocaldococcus genus 7 0 0 1 species Methanocaldococcus bathoardescens 446 1301915 83171 444 1 species 0 Methanocaldococcus fervens 452 73913 1 species 0 Methanocaldococcus vulcanius 0 1 species Methanocaldococcus infernus 328 67760 2190 457 Methanocaldococcus jannaschii 0 species 1 413 2641196 0 1 no rank Methanocaldococcus sp. FS406-22 1 species 0 413 644281 Methanococcaceae 1 0 7 family 8 2183 3688 7 2184 3279 Methanococcus 1 0 5 genus 2187 445 0 species 1 Methanococcus vannielii 2188 560 Methanococcus voltae 0 1 species 1807 39152 Methanococcus maripaludis 0 species 1 0 species 1 Methanococcus aeolicus 460 42879 genus 1 0 401 155862 Methanothermococcus okinawensis 0 1 species 401 155863 183980 758 class 11 0 2 2231 758 Archaeoglobales 1 0 11 order 0 10 family Archaeoglobaceae 1 2232 756 7 190818 178 2 genus 0 85 565033 Geoglobus acetivorans 0 1 species 93 113653 1 species 0 Geoglobus ahangari 0 genus 2 Ferroglobus 1 54260 128 1 1 species 0 Ferroglobus placidus 127 54261 Archaeoglobus 1 0 genus 5 9 2233 443 107 1316941 0 1 species Archaeoglobus sulfaticallidus 1 species 0 Archaeoglobus veneficus 108 58290 84156 131 Archaeoglobus profundus 1 species 0 88 2234 Archaeoglobus fulgidus 1 species 0 Thermococci 1 0 class 41 2 3122 183968 1 Thermococcales order 40 0 11 2258 3120 3 3109 2259 1 Thermococcaceae 39 family 0 1 Pyrococcus genus 8 0 10 774 2260 0 species 1 Pyrococcus furiosus 2261 139 Pyrococcus kukulkanii 0 species 1 1609559 99 113 53953 Pyrococcus horikoshii 0 species 1 2629106 286 0 2 no rank Pyrococcus sp. NA2 0 1 species 342949 114 Pyrococcus sp. ST04 0 1 species 172 1183377 59 1008460 Pyrococcus yayanosii 0 species 1 68 29292 0 1 species Pyrococcus abyssi Thermococcus 1 0 genus 29 24 2229 2263 0 1 species Thermococcus piezophilus 37 1712654 Thermococcus profundus 0 species 1 49899 48 1 species 0 Thermococcus onnurineus 342948 35 1 species 0 Thermococcus barossii 54077 42 42 71997 0 species 1 Thermococcus gorgonarius 1505907 49 species 1 0 Thermococcus eurythermalis 0 1 species Thermococcus pacificus 71998 42 Thermococcus thioreducens 0 1 species 47 277988 51 187880 Thermococcus radiotolerans 0 1 species 54 110164 Thermococcus guaymasensis 0 1 species Thermococcus kodakarensis species 1 0 311400 58 53952 33 1 species 0 Thermococcus peptonophilus 162 172049 1 species 0 Thermococcus sibiricus 368 2627626 0 6 no rank Thermococcus sp. 4557 1 species 0 69 1042877 2016361 57 species 1 0 Thermococcus sp. EXT12c Thermococcus sp. 5-4 0 species 1 2008440 38 Thermococcus sp. 2319x1 0 species 1 1674923 91 species 1 0 Thermococcus sp. AM4 62 246969 122420 51 0 1 species Thermococcus sp. P6 species 1 0 Thermococcus siculi 72803 296 Thermococcus chitonophagus 0 1 species 105 54262 48 195522 Thermococcus nautili 1 species 0 582419 165 Thermococcus paralvinellae 0 species 1 2265 140 0 1 species Thermococcus litoralis Thermococcus gammatolerans 0 1 species 187878 58 Thermococcus celer 1 species 0 49 2264 0 species 1 Thermococcus cleftensis 63 163003 Thermococcus barophilus species 1 0 55802 213 103 83867 1 genus 0 103 971279 Palaeococcus pacificus 1 species 0 117 clade 0 21735 2290931 0 class 52 Methanomicrobia 1 224756 8672 4 1613 2191 4 0 order 18 Methanomicrobiales 1 1 Methanoregulaceae family 6 0 18 1198451 528 191 475087 1 2 genus 0 1 Methanosphaerula 190 475088 Methanosphaerula palustris 0 1 species 395331 319 11 3 genus 0 1 Methanoregula 1 species 0 Methanoregula formicica 160 882104 358766 148 Methanoregula boonei 1 species 0 0 2 family 117 88404 0 genus 2 Methanocorpusculum 1 117 2192 8 109 83984 Methanocorpusculum labreanum 0 1 species 7 family 0 1 Methanomicrobiaceae 2194 702 10 8 230355 217 Methanolacinia 1 0 2 genus 54120 209 1 species 0 Methanolacinia petrolearia 17 45989 475 1 Methanoculleus 4 genus 0 Methanoculleus bourgensis species 1 0 83986 162 Methanoculleus marisnigri species 1 0 2198 177 no rank 1 0 119 2619537 1 species 0 Methanoculleus sp. MAB1 119 86622 196137 262 0 family 2 0 2 genus Methanospirillum 1 262 2202 17 245 2203 1 species 0 Methanospirillum hungatei 570264 385 order 4 0 Methanocellaceae 1 0 family 4 1 570265 385 Methanocella 1 0 genus 3 23 570266 384 0 species 1 Methanocella conradii 127 1175444 species 1 0 Methanocella arvoryzae 234 1175445 13 6670 94695 Methanosarcinales 1 0 order 29 6 2206 6226 Methanosarcinaceae 1 0 24 family 1 genus 0 2220 170 420950 170 Methanolobus psychrophilus species 1 0 7 194 101191 1 Methanomethylovorans genus 2 0 187 101192 Methanomethylovorans hollandica 0 species 1 313 196136 0 genus 1 0 1 species Methanosalsum zhilinae 39669 313 7 2207 4238 Methanosarcina 1 0 genus 13 1 species 0 Methanosarcina acetivorans 2214 284 378 38027 Methanosarcina siciliae 0 species 1 2215 320 0 species 1 Methanosarcina vacuolata 2644672 1012 0 4 no rank 212 1434102 Methanosarcina sp. WH1 0 species 1 0 1 species Methanosarcina sp. MTP4 1434100 265 Methanosarcina sp. WWM596 0 1 species 229 1434103 1434099 306 1 species 0 Methanosarcina sp. Kolksee 418008 249 Methanosarcina horonobensis 1 species 0 Methanosarcina thermophila species 1 0 2210 259 Methanosarcina mazei 0 1 species 503 2209 1 species 0 Methanosarcina lacustris 257 170861 species 1 0 Methanosarcina barkeri 2208 969 0 1 genus 2321 355 0 1 species Methanohalobium evestigatum 355 2322 0 genus 2 2225 488 1 species 0 Methanococcoides methylutens 2226 258 230 29291 Methanococcoides burtonii 0 species 1 2175 462 2 0 genus 3 Methanohalophilus 1 Methanohalophilus mahii 0 1 species 2176 219 241 2177 Methanohalophilus halophilus 1 species 0 Methanosaetaceae 1 0 4 family 4 143067 431 15 427 2222 Methanothrix 1 0 3 genus Methanothrix soehngenii species 1 0 2223 214 0 1 species Methanosaeta harundinacea 301375 198 0 class 65 Halobacteria 1 183963 13063 38 3222 2235 22 order 27 0 1 Halobacteriales 1 Halobacteriaceae 10 family 0 9 1261 2236 4 genus 0 1 Halobacterium 2239 815 17 1 no rank 0 251 2668073 Halobacterium sp. DL1 1 species 0 251 751944 Halobacterium salinarum 0 1 species 2242 232 Halobacterium hubeiense 0 1 species 1407499 315 2 genus 0 1 Halalkalicoccus 332246 236 6 Halalkalicoccus jeotgali 0 1 species 413810 230 98 1980514 4 genus 2 0 1 Halodesulfurarchaeum 1873524 94 Halodesulfurarchaeum formicicum 0 species 1 103 1656823 0 genus 1 1604004 103 Halanaeroarchaeum sulfurireducens 0 1 species 0 family 16 Haloarculaceae 1 1963268 1939 18 5 genus 0 1 Haloarcula 2237 720 6 0 no rank 1 2624677 186 Haloarcula sp. CBA1115 0 1 species 186 1592728 Haloarcula marismortui 0 1 species 2238 183 162 51589 Haloarcula hispanica 1 species 0 Haloarcula taiwanensis species 1 0 183 1932004 3 genus 0 1 Halorhabdus 146825 289 1 146826 135 1 species 0 Halorhabdus utahensis Halorhabdus tiamatea 1 species 0 430914 153 5 388 63743 Natronomonas 1 0 3 genus Natronomonas moolapensis species 1 0 416273 227 Natronomonas pharaonis 0 species 1 156 2257 1 Halorientalis 2 genus 0 2 1073987 258 2648975 256 0 no rank 1 1932360 256 Halorientalis sp. IM1011 0 1 species 2 genus 0 1 Halomicrobium 266 203135 2 Halomicrobium mukohataei 1 species 0 264 57705 1644060 4907 47 order 18 0 1 Natrialbales 27 1644061 4860 1 Natrialbaceae family 17 0 203193 494 0 genus 1 species 1 0 Halobiforma lacisalsi 494 229731 387342 346 4 0 genus 2 Halopiger 1 387343 342 Halopiger xanaduensis 0 species 1 1 236 2256 Natronobacterium 1 0 2 genus 44930 235 species 1 0 Natronobacterium gregoryi 0 2 genus 121871 814 species 1 0 Haloterrigena daqingensis 588898 432 0 1 species Haloterrigena turkmenica 382 62320 63742 1623 4 2 genus 0 1 Natrialba species 1 0 Natrialba magadii 1619 13769 0 3 genus Natrinema 1 490 88723 2 0 no rank 1 2622230 207 0 species 1 Natrinema sp. J7-2 406552 207 69525 281 Natrinema pellirubrum 1 species 0 0 genus 1 353799 200 353800 200 0 1 species Halostagnicola larsenii 1 303 1269201 Salinarchaeum 1 0 genus 2 302 2621923 0 no rank 1 302 1333523 Salinarchaeum sp. Harcht-Bsk1 1 species 0 1 genus 0 29287 327 327 29288 Natronococcus occultus 1 species 0 40 1644055 4896 Haloferacales 1 0 order 19 no rank 1 0 2678336 208 208 756883 1 species 0 halophilic archaeon DL31 family 9 0 1 Haloferacaceae 1644056 3239 10 0 genus 2 Haloquadratum 1 293431 1831 3 0 species 1 Haloquadratum walsbyi 293091 1828 genus 4 0 1 Haloferax 2251 1184 9 218 2252 Haloferax mediterranei 0 species 1 538 35746 species 1 0 Haloferax gibbonsii 1 species 0 Haloferax volcanii 2246 419 Halogeometricum 1 0 genus 2 7 214 60846 207 60847 Halogeometricum borinquense 0 species 1 1 Halorubraceae 8 family 0 15 1963271 1409 1 Salinigranum 2 genus 0 4 1644057 512 Salinigranum rubrum 0 species 1 755307 508 1 Halopenitus genus 2 0 2 1209988 265 species 1 0 Halopenitus persicus 263 1048396 617 56688 2 0 3 genus Halorubrum 1 Halorubrum lacusprofundi 0 species 1 240 2247 29284 375 Halorubrum trapanicum 0 1 species 1 0 0 name