members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4765 31811422 42588 31 31693147 4464 Bacteria superkingdom 119 1 2 0 261 4 clade 2498710 0 67814 0 phylum 4 261 class 2 4 261 Caldisericia 693071 1 0 693072 0 order 3 259 family 3 3 259 Caldisericaceae 1 693073 0 Caldisericum 256 2 2 genus 0 1 693074 693075 0 1 254 Caldisericum exile species 0 1930617 5 1287 phylum 1287 5 Calditrichae class 4 1 1962850 0 0 1962852 1 4 order Calditrichales 1283 4 family 2 1279 3 Calditrichaceae 1 1962854 0 1277 2 Caldithrix genus 1 1 187144 0 0 187145 Caldithrix abyssi 1276 1 species 0 1 1224 Proteobacteria 2024 2093636 877 phylum 0 1807140 6 2876 class Acidithiobacillales 2876 6 43 order 0 1 225057 13 family Acidithiobacillaceae 5 2833 0 1 225058 2820 4 Acidithiobacillus genus 35 119977 1 0 0 160808 Acidithiobacillus ferrivorans 1 966 species 0 33059 Acidithiobacillus caldus 1 898 species species Acidithiobacillus ferrooxidans 921 1 0 920 0 1 580370 2 class Zetaproteobacteria 6 1664 5 1662 Mariprofundales order 20 1 580371 0 1 580372 0 4 1642 Mariprofundaceae family 10 6 genus Mariprofundus 1632 3 0 377315 1 1921086 0 species 1 838 Mariprofundus aestuarium 0 1921087 species Mariprofundus ferrinatatus 788 1 1 28216 0 class 891 456441 351 Betaproteobacteria 1 32003 0 16369 44 Nitrosomonadales order 149 34 family Nitrosomonadaceae 12 4344 0 1 206379 35798 1 0 genus 7 4 2009 Nitrosospira 1231 0 422 1 Nitrosospira multiformis species 0 35799 species Nitrosospira briensis 715 1 Nitrosospira lacus 1 865 species 0 1288494 0 1 914 10 genus Nitrosomonas 7 2301 0 915 Nitrosomonas europaea 1 617 species 682 2 no rank 0 2609265 species 1 271 Nitrosomonas sp. AL212 153948 0 0 261292 species Nitrosomonas sp. Is79A3 411 1 1 336 Nitrosomonas communis species 44574 0 44577 0 1 399 Nitrosomonas ureae species 916 0 species 257 1 Nitrosomonas eutropha 0 1 90627 Gallionellaceae 5 2454 60 family 913 2 Gallionella genus 15 1 96 0 370405 0 species 1 898 Gallionella capsiferriformans Sideroxydans 1481 2 72 genus 0 1 314343 species 1 1409 Sideroxydans lithotrophicus 63745 0 Sterolibacteriaceae 3142 5 65 family 0 2008793 1 34 genus Sulfuritalea 2 1641 0 1054211 1 748811 0 species 1607 1 Sulfuritalea hydrogenivorans 17 genus Methyloversatilis 1436 2 0 1 378210 no rank 1 1419 2639971 0 Methyloversatilis sp. RAC08 1419 1 species 0 1842540 940 3 Thiobacillaceae family 21 2008790 1 0 2 919 Thiobacillus genus 19 1 919 0 0 36861 species Thiobacillus denitrificans 900 1 3551 14 Methylophilaceae family 25 32011 1 0 0 1 16 1 genus Methylophilus 2 483 2630143 0 1 482 no rank species 482 1 Methylophilus sp. TWE2 1662285 0 15 genus Methylobacillus 2 734 0 1 404 species Methylobacillus flagellatus 1 719 0 405 3 364 Candidatus Methylopumilus genus 2 1 1679002 0 0 1581557 Candidatus Methylopumilus planktonicus 165 1 species 0 1581680 Candidatus Methylopumilus turicensis 1 197 species Methylovorus 1454 3 16 genus 0 1 81682 266009 0 species 737 1 Methylovorus glucosotrophus no rank 1 701 0 2634027 0 887061 Methylovorus sp. MP688 701 1 species 6 genus Methylotenera 3 491 0 1 359407 0 359408 Methylotenera mobilis 226 1 species 1055487 0 species 259 1 Methylotenera versatilis 0 2772226 1789 4 family 850 2 Sulfuricella genus 32 935200 1 0 818 1 Sulfuricella denitrificans species 649841 0 1 1778653 0 939 2 Sulfuriferula genus 34 2637784 0 905 1 no rank species 905 1 Sulfuriferula sp. AH1 1985873 0 Neisseriales 36 37077 566 order 0 1 206351 18975 13 Chromobacteriaceae family 284 1 1499392 0 44 genus Jeongeupia 2 1663 0 1 885864 1 1619 no rank 0 2619593 0 1906741 species Jeongeupia sp. USM3 1619 1 genus 20 2 2282 Pseudogulbenkiania 1 568394 0 no rank 2262 1 0 2642558 748280 0 species 1 2262 Pseudogulbenkiania sp. NH8B Aquaspirillum 2 1801 14 genus 0 187 1 1 1787 no rank 0 2620219 species 1 1787 Aquaspirillum sp. LM1 1938604 0 1 168470 0 2 2415 Laribacter genus 26 2389 1 Laribacter hongkongensis species 168471 0 4 10530 no rank 0 90153 0 1 535 Chromobacterium 4 10530 152 genus 2641838 0 no rank 3227 1 3227 1 Chromobacterium sp. ATCC 53434 species 2059672 0 species Chromobacterium vaccinii 1 4054 0 1108595 species 1 3097 Chromobacterium violaceum 536 0 0 1 481 Neisseriaceae 17536 22 158 family 365 1 no rank 421605 0 0 2052837 Neisseriaceae bacterium DSM 100970 365 1 species 1 genus Snodgrassella 2 499 0 1 1193515 0 1196083 species Snodgrassella alvi 1 498 0 1 538 5 genus Eikenella 1432 2 539 0 species 1 1427 Eikenella corrodens 1 59 0 genus 45 1572 3 Vitreoscilla 0 2627922 211 1 no rank Vitreoscilla sp. C1 211 1 species 0 96942 0 63 Vitreoscilla filiformis 1 1316 species genus 227 12 13261 Neisseria 1 482 0 779 1 Neisseria zoodegmatis species 326523 0 0 495 species Neisseria elongata 824 1 0 486 Neisseria lactamica 1 1222 species 1853278 0 1121 1 Neisseria sp. 10023 species 2689 2 no rank 2623750 0 species 2001 1 Neisseria sp. KEM232 655307 0 0 1853276 species Neisseria sp. 10022 1 688 0 490 Neisseria sicca 930 1 species 487 0 species 3066 1 Neisseria meningitidis 0 28091 species Neisseria weaveri 1 582 485 0 916 1 Neisseria gonorrhoeae species 0 488 Neisseria mucosa 905 1 species 1 249 genus 0 71 72 0 species 249 1 Simonsiella muelleri 33809 0 no rank 2 1600 species beta proteobacterium CB 138 1 0 543913 1462 1 Betaproteobacteria bacterium GR16-43 species 1904640 0 0 80840 1 4453 order Burkholderiales 374284 235 42725 29 Oxalobacteraceae family 415 1 75682 0 1 202907 0 genus 95 6791 4 Collimonas 279113 0 species 2337 1 Collimonas pratensis 0 158899 Collimonas fungivorans 2079 1 species 0 279058 Collimonas arenae 1 2280 species 303379 1 0 genus 34 1084 3 Herminiimonas species Herminiimonas arsenitoxidans 340 1 0 1809410 Herminiimonas arsenicoxydans 710 1 species 0 204773 1 846 0 2 1971 Oxalobacter genus 3 species Oxalobacter formigenes 1 1968 0 847 1 29580 0 9512 7 Janthinobacterium genus 177 species 1408 1 Janthinobacterium agaricidamnosum 55508 0 2610881 0 no rank 5807 4 0 1236179 Janthinobacterium sp. B9-8 1 608 species species 700 1 Janthinobacterium sp. Marseille 375286 0 1938606 0 species 1 2163 Janthinobacterium sp. LM6 0 1644131 Janthinobacterium sp. 1_2014MBL_MicDiv 2336 1 species species Janthinobacterium svalbardensis 1 2120 0 368607 305 genus Massilia 6 12452 0 1 149698 2072590 0 3078 1 Massilia sp. ZMN-3 species 1141883 0 1 2508 Massilia putida species 0 2045208 species Massilia sp. B2 1 1799 0 2609279 2 4762 no rank species Massilia sp. NR 4-1 1 2704 0 1678028 0 1707785 species Massilia sp. WG5 2058 1 294 genus Herbaspirillum 10500 6 0 1 963 341045 0 1 1342 Herbaspirillum hiltneri species Herbaspirillum seropedicae 3029 1 species 0 964 species 1 2354 Herbaspirillum frisingense 92645 0 2258 1 Herbaspirillum rubrisubalbicans species 80842 0 0 2624150 1 1223 no rank Herbaspirillum sp. meg3 1223 1 species 0 2025949 224471 0 no rank 21820 17 1 88 0 genus 91 2322 2 Leptothrix 34029 0 1 2231 Leptothrix cholodnii species 2309 2 Rhizobacter genus 64 1 212743 0 Rhizobacter gummiphilus 1 2245 species 0 946333 2915 2 Rubrivivax genus 94 28067 1 0 0 28068 Rubrivivax gelatinosus 2821 1 species 2 3017 Mitsuaria genus 230 1 65047 0 0 2648776 1 2787 no rank 1658665 0 1 2787 Mitsuaria sp. 7 species 93681 1 0 genus 89 2696 2 Roseateles 76731 0 1 2607 Roseateles depolymerans species 316612 1 0 genus 58 2205 2 Methylibium species 1 2147 Methylibium petroleiphilum 105560 0 0 1 32012 40 genus Thiomonas 2239 2 926 0 1 2199 Thiomonas intermedia species Paucibacter 2032 2 55 genus 0 318147 1 1977 1 no rank 2642959 0 0 1768242 species Paucibacter sp. KCTC 42545 1977 1 0 413882 species [Polyangium] brachysporum 1 2085 2 1769 no rank 0 80841 0 1834205 Burkholderiales bacterium YL45 1 805 species Burkholderiales bacterium GJ-E10 964 1 species 0 1469502 1 119060 0 family 890 84 134924 Burkholderiaceae 3 genus Polynucleobacter 552 4 0 1 44013 576611 0 species 213 1 Polynucleobacter asymbioticus 0 576610 species Polynucleobacter necessarius 159 1 1835254 0 species 177 1 Polynucleobacter duraquae genus 581 1 2571159 0 0 412963 species Paraburkholderia rhizoxinica 581 1 genus 308 12 16108 Paraburkholderia 1 1822464 0 0 134537 Paraburkholderia fungorum 1329 1 species no rank 1 1275 0 2615204 1926494 0 1 1275 Paraburkholderia sp. SOS3 species species Paraburkholderia terrae 1269 1 0 311230 75105 0 species 1 2058 Paraburkholderia caribensis 148447 0 species 1544 1 Paraburkholderia phymatum 169430 0 1 1244 Paraburkholderia hospita species Paraburkholderia phytofirmans 1146 1 species 0 261302 36873 0 species 1 1653 Paraburkholderia xenovorans 2026199 0 species 1621 1 Paraburkholderia aromaticivorans 948107 0 species 1 1501 Paraburkholderia sprentiae 0 252970 Paraburkholderia phenoliruptrix 1 1160 species 0 1 93217 Pandoraea 10 11022 191 genus 0 93218 species Pandoraea apista 1 1122 0 573737 Pandoraea oxalativorans 1295 1 species 93222 0 1211 1 Pandoraea sputorum species 656179 0 species 1 1001 Pandoraea faecigallinarum 93220 0 1 1249 Pandoraea pnomenusa species 0 445709 species Pandoraea thiooxydans 1089 1 species 1 1207 Pandoraea pulmonicola 93221 0 93219 0 species 1365 1 Pandoraea norimbergensis 1292 1 Pandoraea vervacti species 656178 0 0 1 106589 Cupriavidus 21926 9 741 genus 82541 0 1 2006 Cupriavidus gilardii species species Cupriavidus pinatubonensis 1 2016 0 248026 119219 0 1 1810 Cupriavidus metallidurans species Cupriavidus necator 4091 1 species 0 106590 68895 0 species 2137 1 Cupriavidus basilensis 1 3018 Cupriavidus sp. USMAA1020 species 367825 0 2 6107 no rank 2640874 0 species Cupriavidus sp. USMAA2-4 3243 1 0 876364 species 1 2864 Cupriavidus sp. USMAHM13 1389192 0 0 48736 1 Ralstonia 16603 5 327 genus 190721 0 1 2282 Ralstonia insidiosa species 0 329 Ralstonia pickettii 1 3706 species Ralstonia solanacearum 8003 1 species 0 305 0 105219 Ralstonia mannitolilytica 2285 1 species 1827195 0 genus 1575 1 Burkholderia sp. RPE64 1 1575 species 0 758793 1 32008 0 genus 3434 41 65667 Burkholderia 0 87882 19 32841 species group 0 265293 species [Pseudomonas] mesoacidophila 1 973 species Burkholderia metallica 824 1 0 488729 species Burkholderia territorii 1 780 0 1503055 954 1 Burkholderia seminalis species 488731 0 species 969 1 Burkholderia contaminans 488447 0 species Burkholderia stabilis 1 1706 0 95485 species 945 1 Burkholderia latens 488446 0 482957 0 species 1 1618 Burkholderia lata Burkholderia diffusa 1 896 species 0 488732 0 1503054 Burkholderia stagnalis 1466 1 species 1 3185 Burkholderia ubonensis species 101571 0 2526 1 Burkholderia multivorans species 87883 0 species Burkholderia pseudomultivorans 1104 1 0 1207504 Burkholderia vietnamiensis 1 1255 species 0 60552 152480 0 species 1308 1 Burkholderia ambifaria 1 5285 Burkholderia cenocepacia species 95486 0 292 0 species 1 5588 Burkholderia cepacia species 737 1 Burkholderia pyrrocinia 60550 0 Burkholderia dolosa 722 1 species 0 152500 0 2613784 no rank 11 11799 0 416344 Burkholderia sp. KJ006 743 1 species species Burkholderia sp. CCGE1001 1158 1 0 640510 Burkholderia sp. PAMC 26561 1 744 species 0 1795043 1795874 0 774 1 Burkholderia sp. PAMC 28687 species 1740163 0 1155 1 Burkholderia sp. Bp7605 species species Burkholderia sp. Bp5365 867 1 0 1740162 1253 1 Burkholderia sp. CCGE1003 species 640512 0 957 1 Burkholderia sp. HB1 species 1678678 0 Burkholderia sp. RPE67 1 1460 species 0 758796 1097668 0 1 1874 Burkholderia sp. YI23 species Burkholderia sp. 2002721687 814 1 species 0 1468409 0 41899 Burkholderia plantarii 1829 1 species 337 0 1 3139 Burkholderia glumae species species group 9161 7 111527 0 Burkholderia pseudomallei 1 2461 species 0 28450 species 1 883 Burkholderia sp. MSMB617WGS 1637831 0 Burkholderia mallei 1 616 species 0 13373 species 849 1 Burkholderia sp. MSMB0266 1637837 0 Burkholderia oklahomensis 1379 1 species 0 342113 species 2179 1 Burkholderia thailandensis 57975 0 794 1 Burkholderia sp. MSMB0852 species 1637841 0 0 28095 species Burkholderia gladioli 3464 1 family 527 43 74806 Alcaligenaceae 506 1 0 Oligella 2 395 2 genus 0 1 90243 90245 0 1 393 Oligella urethralis species 1 222 0 genus 935 29193 6 Achromobacter 0 2626865 2636 1 no rank 1758194 0 2636 1 Achromobacter sp. AONIH1 species 0 32002 Achromobacter denitrificans 1 6419 species 0 217204 species Achromobacter insolitus 1 2595 0 217203 Achromobacter spanius 4956 1 species 85698 0 species 1 11652 Achromobacter xylosoxidans Taylorella 3 367 1 genus 0 29574 1 species 209 1 Taylorella asinigenitalis 84590 0 species 157 1 Taylorella equigenitalis 29575 0 0 1 290425 16 genus Advenella 1768 3 310575 0 1 778 Advenella kashmirensis species Advenella mimigardefordensis 974 1 species 0 302406 0 1100891 genus 218 1 species 218 1 Paenalcaligenes hominis 643674 0 2 290 Basilea genus 1 1 1472344 0 0 1472345 species Basilea psittacipulmonis 1 289 0 1 359336 111 genus Castellaniella 2191 2 75697 0 species 1 2080 Castellaniella defragrans Pusillimonas 2 828 21 genus 0 305976 1 0 2640016 no rank 1 807 1007105 0 1 807 Pusillimonas sp. T7-7 species 0 1 517 1206 genus Bordetella 17 34048 Bordetella avium 999 1 species 0 521 species 1 2237 Bordetella pseudohinzii 1331258 0 103855 0 2213 1 Bordetella hinzii species 2420 1 Bordetella parapertussis species 519 0 0 1416803 species Bordetella genomosp. 9 1 1623 463024 0 species 1 2074 Bordetella genomosp. 6 1416806 0 species 2379 1 Bordetella genomosp. 8 species Bordetella trematum 1924 1 0 123899 0 518 Bordetella bronchiseptica 4061 1 species 0 463014 species Bordetella flabilis 1 2095 0 463040 species Bordetella genomosp. 13 2303 1 463025 0 species 1 2308 Bordetella bronchialis 1 1654 Bordetella pertussis species 520 0 0 94624 species Bordetella petrii 1780 1 species Bordetella holmesii 800 1 0 35814 0 2630031 no rank 1972 1 species Bordetella sp. H567 1 1972 0 1697043 genus 47 2 2790 Orrella 1921582 1 0 0 1851544 Orrella dioscoreae 2743 1 species 1 507 0 genus 38 2191 2 Alcaligenes 0 511 Alcaligenes faecalis 2153 1 species Comamonadaceae 93787 59 1627 family 0 80864 1 464 genus Delftia 5 12755 0 1 80865 Delftia tsuruhatensis 1 3156 species 0 180282 6271 2 no rank 2613839 0 1920191 0 2973 1 Delftia sp. HK171 species 0 742013 Delftia sp. Cs1-4 3298 1 species 80866 0 species 2864 1 Delftia acidovorans 1 665874 0 1471 3 Limnohabitans genus 5 1466 2 no rank 2626134 0 1678129 0 453 1 Limnohabitans sp. 103DPR2 species 1678128 0 species 1 1013 Limnohabitans sp. 63ED37-2 0 1 52972 Polaromonas 3725 3 35 genus 0 2638319 1 1779 no rank species Polaromonas sp. JS666 1779 1 0 296591 species Polaromonas naphthalenivorans 1 1911 0 216465 Comamonas 4 8076 104 genus 0 1 283 0 285 Comamonas testosteroni 1 4204 species 1871 1 Comamonas serinivorans species 1082851 0 species Comamonas kerstersii 1 1897 0 225992 2678886 0 1 2459 genus 2116657 0 species 1 2459 Melaminivora sp. SC2-7 2 1493 Simplicispira genus 11 352450 1 0 2109915 0 species 1482 1 Simplicispira sp. SC1-8 5465 4 Hydrogenophaga genus 92 1 47420 0 0 2610897 4204 2 no rank 1842537 0 species 1745 1 Hydrogenophaga sp. RAC07 species Hydrogenophaga sp. PBC 2459 1 0 795665 1763535 0 species 1169 1 Hydrogenophaga crassostreae 1 219181 0 3 3811 Ottowia genus 44 no rank 1 1893 2645081 0 species 1893 1 Ottowia sp. oral taxon 894 1658672 0 2109914 0 1 1874 Ottowia sp. KADR8-3 species 16 genus Alicycliphilus 2918 2 0 201096 1 Alicycliphilus denitrificans 2902 1 species 0 179636 0 1 1649468 Melaminivora 2 2352 53 genus 1 2299 no rank 2641902 0 species Melaminivora sp. SC2-9 1 2299 0 2109913 genus 2461 2 2490452 0 Comamonadaceae bacterium B1 1241 1 species 0 1458426 species 1220 1 Comamonadaceae bacterium A1 1458425 0 genus 766 9 15577 Acidovorax 1 12916 0 1 1659 Acidovorax citrulli species 80869 0 no rank 8078 4 2684926 0 1858609 0 1 1854 Acidovorax sp. T1 species 1 1735 Acidovorax sp. JS42 species 232721 0 Acidovorax sp. KKS102 1 2301 species 0 358220 species 1 2188 Acidovorax sp. RAC01 1842533 0 80867 0 2106 1 Acidovorax avenae species Acidovorax ebreus 1464 1 species 0 721785 species Acidovorax sp. NA3 1 1504 0 553814 5 genus Candidatus Symbiobacter 650 2 0 1 1436289 1436290 0 species 1 645 Candidatus Symbiobacter mobilis 2 4882 Ramlibacter genus 33 174951 1 0 Ramlibacter tataouinensis 4849 1 species 0 94132 71 genus Rhodoferax 7143 5 0 1 28065 192843 0 1261 1 Rhodoferax ferrireducens species species 1 2424 Rhodoferax koreense 1842727 0 0 1484693 species Rhodoferax saidenbachensis 1 1950 81479 0 1437 1 Rhodoferax antarcticus species 5 13409 Variovorax genus 271 1 34072 0 663243 0 4826 2 no rank 0 1795631 species Variovorax sp. PAMC 28711 1544 1 2126319 0 1 3282 Variovorax sp. PMC12 species Variovorax paradoxus 5629 1 species 0 34073 0 436515 species Variovorax boronicumulans 1 2683 0 1 364316 10 genus Verminephrobacter 1938 2 0 364317 species Verminephrobacter eiseniae 1928 1 0 238749 1 12 genus Diaphorobacter 2 1575 1563 1 Diaphorobacter polyhydroxybutyrativorans species 1546149 0 Rhodocyclales 22 24100 517 order 0 206389 1 31 family Azonexaceae 3 1240 0 2008795 1 24 genus Dechloromonas 2 1209 0 1 73029 259537 0 1 1185 Dechloromonas aromatica species 0 1 75787 110 family Rhodocyclaceae 6 5376 77 genus Azospira 2 3117 0 1 146937 species Azospira oryzae 3040 1 0 146939 1 928 no rank 0 75788 1898103 0 1 928 Rhodocyclaceae bacterium species 2 1221 Aromatoleum genus 25 1 551759 0 1 1196 Aromatoleum aromaticum species 551760 0 12 16967 Zoogloeaceae family 442 1 2008794 0 genus 277 10187 6 Thauera 33057 1 0 2609274 0 no rank 4770 2 2660 1 Thauera sp. K11 species 2005884 0 species 2110 1 Thauera sp. MZ1T 85643 0 96773 0 species 1456 1 Thauera chlorobenzoica Thauera aromatica 1739 1 species 0 59405 1134435 0 1945 1 Thauera humireducens species Azoarcus 6338 5 280 genus 0 12960 1 species Azoarcus olearius 1476 1 0 418699 0 2629479 3305 2 no rank species 1534 1 Azoarcus sp. KH32C 748247 0 198107 0 species 1 1771 Azoarcus sp. CIB 2067960 0 1277 1 Azoarcus sp. SY39 species no rank 11 2120 0 119066 33055 1 0 6 522 Kinetoplastibacterium genus 15 1 64 Kinetoplastibacterium blastocrithidii species 233181 0 111 1 Candidatus Kinetoplastibacterium desouzaii species 994692 0 33056 0 145 1 Candidatus Kinetoplastibacterium crithidii species Candidatus Kinetoplastibacterium galatii 1 101 species 0 994695 Candidatus Kinetoplastibacterium oncopeltii 1 86 species 0 994696 genus 1 81 1381133 0 669502 0 species 81 1 Candidatus Profftella armatura 1301080 0 genus 1 16 1160784 0 species 1 16 Candidatus Nasuia deltocephalinicola 189384 0 1 38 genus species 38 1 Candidatus Tremblaya princeps 189385 0 0 327159 1 Candidatus Accumulibacter 1463 2 77 genus 1 1386 Candidatus Accumulibacter phosphatis species 327160 0 Oligoflexia 9 3132 1 class 0 1 1553900 213481 1 0 order 20 2258 5 Bdellovibrionales family 2 2238 4 Bdellovibrionaceae 213483 1 0 1 958 0 genus 6 2236 3 Bdellovibrio 0 959 Bdellovibrio bacteriovorus 1987 1 species 0 453816 species Bdellovibrio exovorus 1 243 2024979 0 order 873 3 263369 1 0 family 2 420 2 Bacteriovoracaceae genus 418 1 146784 0 species 418 1 Bacteriovorax stolpii 960 0 453 1 family 1652132 0 0 1652133 453 1 genus 0 97084 Halobacteriovorax marinus 1 453 species subphylum 247466 200 0 68525 1 28221 0 class 439 130 193885 Deltaproteobacteria 62906 38 Myxococcales order 848 1 29 0 26 48175 suborder 80811 0 0 1 39 396 family Archangiaceae 13632 9 0 1 40 34 genus Stigmatella 2 2816 0 41 species Stigmatella aurantiaca 1 2782 1 47 0 2 3827 Archangium genus 16 48 0 3811 1 Archangium gephyra species 28 genus Melittangium 3315 2 0 1 44 83453 0 species 1 3287 Melittangium boletus 0 1 42 Cystobacter 2 3278 40 genus 3238 1 Cystobacter fuscus species 43 0 1524213 1 0 1825 3 Vulgatibacteraceae family 21 0 1 1524214 Vulgatibacter 1804 2 90 genus 0 1391653 Vulgatibacter incomptus 1714 1 species 5 10188 Anaeromyxobacteraceae family 92 1524215 1 0 1 161492 0 genus 282 10096 4 Anaeromyxobacter 5149 2 no rank 2620896 0 447217 0 2958 1 Anaeromyxobacter sp. K species 2191 1 Anaeromyxobacter sp. Fw109-5 species 404589 0 161493 0 1 4665 Anaeromyxobacter dehalogenans species 0 1 31 201 family Myxococcaceae 22530 9 83461 1 0 genus 231 7630 3 Corallococcus 0 184914 Corallococcus coralloides 4204 1 species 35 0 3195 1 Myxococcus macrosporus species 0 32 1 659 genus Myxococcus 5 14699 1 3164 Myxococcus hansupus species 1297742 0 34 0 species 2653 1 Myxococcus xanthus 1 2210 Myxococcus stipitatus species 83455 0 33 0 species 6013 1 Myxococcus fulvus suborder 8 10604 0 80812 1 49 0 5 8471 Polyangiaceae family 96 1 50 0 1866 2 Chondromyces genus 8 52 0 1 1858 Chondromyces crocatus species 0 1 39643 Sorangium 6509 2 74 genus 56 0 species 1 6435 Sorangium cellulosum 2133 3 Sandaracinaceae family 48 1 1055686 0 29 genus Sandaracinus 2 2085 0 1055688 1 species Sandaracinus amylolyticus 2056 1 0 927083 224462 0 3 3279 suborder 224464 1 0 family 29 3279 3 Kofleriaceae 3250 2 Haliangium genus 107 162027 1 0 80816 0 species 3143 1 Haliangium ochraceum Desulfuromonadales 24 35484 517 order 0 1 69541 213422 1 0 family 223 14 23131 Geobacteraceae Geoalkalibacter 1828 2 20 genus 0 1 392332 species 1 1808 Geoalkalibacter subterraneus 483547 0 21080 11 Geobacter genus 329 1 28231 0 2 5556 no rank 0 2627627 0 443144 species Geobacter sp. M21 2279 1 0 443143 Geobacter sp. M18 1 3277 species 1586 1 Geobacter uraniireducens species 351604 0 345632 0 species 2326 1 Geobacter pickeringii Geobacter metallireducens 1677 1 species 0 28232 species 1 2193 Geobacter lovleyi 313985 0 Geobacter daltonii 1296 1 species 0 1203471 1340425 0 species 1 2041 Geobacter anodireducens 0 35554 species Geobacter sulfurreducens 1746 1 225194 0 1 2330 Geobacter bemidjiensis species 9 11836 Desulfuromonadaceae family 333 213421 1 0 0 1 890 30 genus Desulfuromonas 3 4459 Desulfuromonas soudanensis 1 2151 species 0 1603606 2614637 0 no rank 2278 1 0 1823759 species Desulfuromonas sp. DDH964 1 2278 genus 49 5 7044 Pelobacter 18 1 0 0 29543 species Pelobacter propionicus 1 2867 0 19 Pelobacter carbinolicus 1 1457 species 0 2620299 no rank 1047 1 species Pelobacter sp. SFB93 1047 1 0 1842532 species Pelobacter acetylenicus 1624 1 0 29542 0 213462 1 14 order Syntrophobacterales 11 4101 0 1 213465 25 family Syntrophobacteraceae 1475 3 1450 2 Syntrophobacter genus 15 1 29526 0 0 119484 Syntrophobacter fumaroxidans 1 1435 species 0 1 213468 Syntrophaceae 7 2612 9 family 2 genus Desulfomonile 2 744 0 2357 1 742 1 Desulfomonile tiedjei species 2358 0 Desulfobacca 2 796 1 genus 0 60892 1 species Desulfobacca acetoxidans 1 795 0 60893 genus 5 1063 2 Syntrophus 43773 1 0 316277 0 1 1058 Syntrophus aciditrophicus species Desulfovibrionales 73726 26 669 order 0 1 213115 0 213116 1 Desulfomicrobiaceae 5387 4 139 family 0 1 898 Desulfomicrobium 3 5248 32 genus 1 2410 Desulfomicrobium orale species 132132 0 899 0 species 2806 1 Desulfomicrobium baculatum 300 family Desulfovibrionaceae 66976 18 0 194924 1 164 genus Pseudodesulfovibrio 4 10594 0 1 2035811 1716143 0 species 1 4942 Pseudodesulfovibrio indicus 0 57320 Pseudodesulfovibrio profundus 1 1800 species Pseudodesulfovibrio aespoeensis 1 3688 species 0 182210 1 3104 genus 2582840 0 species 3104 1 Desulfovibrio africanus 873 0 2794998 0 1 1575 genus 1575 1 Desulfovibrio salexigens species 880 0 5 genus Lawsonia 2 672 0 1 41707 Lawsonia intracellularis 1 667 species 0 29546 393 genus Desulfovibrio 9 50731 0 1 872 901 0 1 11498 Desulfovibrio piger species 881 0 9554 1 Desulfovibrio vulgaris species 0 1725232 Candidatus Desulfovibrio trichonymphae 1790 1 species 876 0 1 8981 Desulfovibrio desulfuricans species 58180 0 species 1 3018 Desulfovibrio alaskensis 44742 0 7012 1 Desulfovibrio fairfieldensis species 0 184917 Desulfovibrio magneticus 1 4116 species 1 4369 no rank 0 2593640 1 4369 Desulfovibrio sp. G11 species 631220 0 0 1 213117 Desulfohalobiaceae 694 3 2 family 2 692 Desulfohalobium genus 9 1 45662 0 species Desulfohalobium retbaense 1 683 0 45663 20 13129 Desulfobacterales order 161 1 213118 0 1 213121 0 9 6063 Desulfobulbaceae family 23 1 893 0 genus 7 2 2464 Desulfobulbus 1986146 0 species 2457 1 Desulfobulbus sp. ORNL genus 2 692 2 Desulfotalea 109168 1 0 0 84980 Desulfotalea psychrophila 690 1 species 1 427922 0 genus 82 2067 2 Desulfurivibrio species Desulfurivibrio alkaliphilus 1985 1 0 427923 0 53318 1 2 genus Desulfocapsa 2 817 815 1 Desulfocapsa sulfexigens species 65555 0 0 1 213119 28 family Desulfobacteraceae 10 6905 genus 3 2 995 Desulfobacula 28222 1 0 0 28223 Desulfobacula toluolica 992 1 species genus 3 1131 2 Desulfobacterium 1 2295 0 1128 1 Desulfobacterium autotrophicum species 2296 0 1 218207 0 genus 1 1540 2 Desulfatibacillum 0 259354 species Desulfatibacillum alkenivorans 1 1539 Desulfococcus 3211 3 12 genus 0 1 896 Desulfococcus oleovorans 1 1645 species 0 181663 1554 1 Desulfococcus multivorans species 897 0 0 1 453227 Desulfarculales 3332 4 47 order 0 1 453228 70 family Desulfarculaceae 3 3285 1 453229 0 genus 55 3215 2 Desulfarculus 453230 0 3160 1 Desulfarculus baarsii species 0 1 213113 4 order Desulfurellales 768 6 0 1 117942 Desulfurellaceae 764 5 2 family 0 84404 1 Hippea 2 337 6 genus 1 331 Hippea maritima species 84405 0 Desulfurella 2 425 21 genus 0 33001 1 species 404 1 Desulfurella acetivorans 33002 0 1 29547 0 70 53581 Epsilonproteobacteria class 196 0 235899 3 941 order 2795691 0 family 332 1 0 269258 1 332 genus 332 1 no rank 2624044 0 species 332 1 Nitratiruptor sp. SB155-2 387092 0 2 609 family 0 224467 2 609 Nautilia genus 22 1 191291 0 0 244787 species Nautilia profundicola 587 1 0 1 213849 Campylobacterales 66 52444 2105 order family 3276 41 43389 Campylobacteraceae 72294 1 0 0 2321108 no rank 5 2666 737 1 genus 0 2321187 0 1850254 species Arcobacter sp. LPB0137 737 1 671 1 no rank 0 2321207 944547 0 671 1 Arcobacter sp. L species Arcobacter 3 1258 9 genus 0 1 28196 Arcobacter nitrofigilis 522 1 species 0 28199 Arcobacter butzleri 1 727 species 0 28197 534 genus Campylobacter 34931 26 0 1 194 199 0 1 415 Campylobacter concisus species 0 497724 species Campylobacter subantarcticus 1 309 196 0 species 818 1 Campylobacter fetus 0 1244531 Campylobacter iguaniorum 1 188 species 260714 0 species 230 1 Campylobacter insulaenigrae 0 824 species Campylobacter gracilis 1 441 Campylobacter volucris 1 285 species 0 1031542 827 0 242 1 Campylobacter ureolyticus species 1 239 Campylobacter peloridis species 488546 0 28898 0 species 1 195 Campylobacter helveticus species 1 261 Campylobacter cuniculorum 374106 0 0 75658 Campylobacter lanienae 1132 1 species Campylobacter hominis 1 401 species 0 76517 0 200 Campylobacter curvus 1 357 species 195 0 20273 1 Campylobacter coli species 0 197 Campylobacter jejuni 1 5266 species 206 0 1 441 Campylobacter sputorum species species 437 1 Campylobacter pinnipediorum 1965231 0 Campylobacter lari 1 901 species 0 201 2593542 0 no rank 988 4 species 261 1 Campylobacter sp. RM8964 1660074 0 1660076 0 238 1 Campylobacter sp. RM12175 species Campylobacter sp. RM16704 260 1 species 0 1500960 species Campylobacter sp. RM6137 1 229 0 1660073 species Campylobacter hyointestinalis 429 1 0 198 522485 0 1 149 Campylobacter avium species genus 21 9 2516 Sulfurospirillum 57665 1 0 Sulfurospirillum deleyianum 288 1 species 0 65553 2618290 0 no rank 3 1021 220622 0 species 1 353 Sulfurospirillum sp. JPD-1 species 275 1 Sulfurospirillum sp. SL2-1 1986224 0 1 393 Sulfurospirillum sp. UCH001 species 1581011 0 species 1 304 Sulfurospirillum multivorans 66821 0 0 366522 Sulfurospirillum cavolei 324 1 species 1 272 Sulfurospirillum barnesii species 44674 0 Sulfurospirillum halorespirans 286 1 species 0 194424 family 12 3886 15 Helicobacteraceae 1 72293 0 Helicobacter 12 3632 8 genus 0 1 209 210 0 species 1 1469 Helicobacter pylori 206 1 Helicobacter bilis species 37372 0 Helicobacter typhlonius 1 216 species 0 76936 32025 0 1 302 Helicobacter hepaticus species no rank 1 160 0 2593540 222136 0 species 160 1 Helicobacter sp. MIT 01-6242 1 247 Helicobacter cinaedi species 213 0 species 1 335 Helicobacter cetorum 138563 0 1 219 Helicobacter mustelae species 217 0 Helicobacter himalayensis 182 1 species 0 1591088 212 0 species 105 1 Helicobacter acinonychis 214 0 species 183 1 Helicobacter felis Wolinella 242 2 2 genus 0 1 843 species Wolinella succinogenes 240 1 0 844 family 5 1945 0 2771472 1 269260 0 2 834 Nitratifractor genus 1 269261 0 species 833 1 Nitratifractor salsuginis 0 265570 1 5 genus Sulfurovum 3 1111 555 1 no rank 0 2646778 555 1 Sulfurovum sp. NBC37-1 species 387093 0 0 206403 species Sulfurovum lithotrophicum 551 1 4 1119 family 0 2771471 3 768 Sulfurimonas genus 4 202746 1 0 species Sulfurimonas autotrophica 481 1 0 202747 species Sulfurimonas denitrificans 283 1 0 39766 286130 0 genus 351 1 148813 0 351 1 Sulfuricurvum kujiense species 1 1236 0 class 1993 892 880508 Gammaproteobacteria 72273 1 0 33 7370 Thiotrichales order 5 0 1 135616 15 family Piscirickettsiaceae 2798 14 0 1237 genus 1 454 0 1238 Piscirickettsia salmonis 1 454 species Hydrogenovibrio 253 2 2 genus 0 1 28884 251 1 Hydrogenovibrio crunogenus species 39765 0 genus 1 884 4 Cycloclasticus 1 34067 0 0 1329899 species Cycloclasticus zancles 263 1 0 2621467 620 2 no rank 278 1 Cycloclasticus sp. P1 species 385025 0 species 342 1 Cycloclasticus sp. PY97N 728003 0 7 genus Methylophaga 769 3 0 1 40222 0 754476 Methylophaga nitratireducenticrescens 472 1 species 754477 0 species 1 290 Methylophaga frappieri Thiomicrospira 423 3 4 genus 0 933 1 Thiomicrospira aerophila 1 174 species 0 92245 species 245 1 Thiomicrospira cyclica 147268 0 Thiotrichaceae 559 4 1 family 0 1 135617 1 1021 0 2 296 Beggiatoa genus 1 295 1 Beggiatoa leptomitoformis species 288004 0 0 40751 genus 1 262 40754 0 1 262 Thioploca ingrica species 34064 1 0 14 4008 Francisellaceae family 5 39 genus Francisella 3869 12 0 1 262 1542390 0 species 365 1 Francisella sp. CA97-1460 Francisella halioticida 1 197 species 0 549298 516 2 no rank 2610885 0 species Francisella sp. FSC1006 298 1 0 1547445 species Francisella sp. MA067296 218 1 0 475375 954 0 species 241 1 Francisella persica 0 28110 Francisella philomiragia 1 541 species 573570 0 species 296 1 Francisella sp. TX077310 0 573569 Francisella sp. TX077308 239 1 species species Francisella noatunensis 343 1 0 657445 0 622488 species Francisella hispaniensis 242 1 0 263 Francisella tularensis 1 850 species 1869285 0 134 1 genus 0 594679 species Allofrancisella guangzhouensis 134 1 33811 0 no rank 2 2952 species 1 1539 gamma proteobacterium HdN1 83406 0 1248727 0 1 1413 endosymbiont of unidentified scaly snail isolate Monju species order 4 663 1240482 0 1240483 1 0 4 663 Orbaceae family 11 1 1335631 0 genus 1 335 2 Frischella 334 1 Frischella perrara species 1267021 0 0 1193503 1 317 genus 1 317 Gilliamella apicola species 1196095 0 91347 1 0 order 1452 247 331258 Enterobacterales 1292 2 no rank 0 451511 1 702 0 genus 26 2 1292 Plesiomonas 0 703 Plesiomonas shigelloides 1266 1 species 0 1903412 1 32 family Hafniaceae 14 11651 2 716 Obesumbacterium genus 74 1 82982 0 Obesumbacterium proteus 642 1 species 0 82983 3 1829 Hafnia genus 47 1 568 0 Hafnia alvei 1 1319 species 0 569 1 463 no rank 2621980 0 Hafnia sp. CBA7124 1 463 species 0 1848580 0 1 635 585 genus Edwardsiella 9074 8 species 878 1 Edwardsiella anguillarum 1821960 0 species Edwardsiella piscicida 1 1294 0 1263550 species Edwardsiella tarda 1 2417 0 636 0 2676541 no rank 2 2098 species Edwardsiella sp. EA181011 1 1237 0 1578828 1650654 0 1 861 Edwardsiella sp. LADL05-105 species 0 93378 Edwardsiella hoshinae 1 922 species species Edwardsiella ictaluri 1 880 0 67780 208999 120 Enterobacteriaceae family 1640 1 543 0 genus 76 3 5667 Raoultella 1 160674 0 species Raoultella ornithinolytica 4108 1 0 54291 575 0 species 1 1483 Raoultella planticola 37 genus Pluralibacter 5453 3 0 1330546 1 61647 0 species 3560 1 Pluralibacter gergoviae 0 1334193 species [Enterobacter] lignolyticus 1856 1 0 1335483 1 1 genus Shimwellia 1261 2 563 0 species 1 1260 Shimwellia blattae no rank 5 5636 0 36866 891974 0 species 1 1053 Plautia stali symbiont 1920109 0 1126 1 Enterobacteriaceae bacterium ENNIH2 species species Enterobacteriaceae bacterium ENNIH1 1 1202 0 2066051 Enterobacteriaceae bacterium ENNIH3 1 1223 species 0 1920128 species Enterobacteriaceae bacterium strain FGI 57 1 1032 0 693444 4245 2 Cedecea genus 8 158483 1 0 1 4237 Cedecea neteri species 158822 0 35600 10 Klebsiella genus 1208 570 1 0 2 3585 no rank 0 2608929 1934254 0 2103 1 Klebsiella sp. M5al species 1905288 0 species 1 1482 Klebsiella sp. LTGPAF-6F 0 1134687 Klebsiella michiganensis 3184 1 species 1 4564 Klebsiella variicola species 244366 0 0 573 species Klebsiella pneumoniae 10397 1 species Klebsiella quasivariicola 1640 1 0 2026240 species 1943 1 Klebsiella quasipneumoniae 1463165 0 0 571 Klebsiella oxytoca 1 6356 species 548 0 species 1 2723 Klebsiella aerogenes 0 1 1330547 Kosakonia 5 5761 59 genus 0 208223 Kosakonia cowanii 1 1791 species 0 497725 Kosakonia oryzae 1 1227 species Kosakonia radicincitans 1 1505 species 0 283686 1158459 0 species 1179 1 Kosakonia sacchari 0 1 409304 1 genus Candidatus Ishikawaella 2 118 species Candidatus Ishikawaella capsulata 1 117 0 168169 1 590 0 genus 26 3 8298 Salmonella species Salmonella bongori 1 907 0 54736 0 28901 species Salmonella enterica 7365 1 0 579 genus 1395 1 Kluyvera intermedia 1395 1 species 0 61648 1 544 0 14 24415 Citrobacter genus 1112 species Citrobacter rodentium 1 1517 0 67825 0 35703 Citrobacter amalonaticus 1 2884 species 14398 7 species group 1344959 0 species 1 1391 Citrobacter freundii complex sp. CFNIH9 2077149 0 0 2077147 Citrobacter freundii complex sp. CFNIH3 1137 1 species 0 546 species Citrobacter freundii 1 5762 67827 0 1 2013 Citrobacter werkmanii species species Citrobacter freundii complex sp. CFNIH4 1 1293 0 2077148 1675 1 Citrobacter braakii species 57706 0 species Citrobacter freundii complex sp. CFNIH2 1127 1 0 2066049 67824 0 1 1117 Citrobacter farmeri species 545 0 1374 1 Citrobacter koseri species no rank 2 2013 0 2644389 Citrobacter sp. FDAARGOS_156 1045 1 species 0 1702170 1920110 0 968 1 Citrobacter sp. CFNIH10 species 0 547 1 2933 genus Enterobacter 22 61002 species group 12 47929 0 354276 299767 0 species 5904 1 Enterobacter ludwigii 0 1 158836 Enterobacter hormaechei 3 8355 4870 species 1296536 0 1675 1 Enterobacter xiangfangensis subspecies 1812934 0 1 1810 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 550 0 1 18504 Enterobacter cloacae species species Enterobacter cancerogenus 922 1 0 69218 0 208224 species Enterobacter kobei 1168 1 8186 3 no rank 2757714 0 Enterobacter cloacae complex bacterium 1 1121 species 0 2027919 0 2077137 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 5970 0 1915310 species Enterobacter cloacae complex sp. ECNIH7 1095 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 1200 1 species 0 1812935 0 61645 species Enterobacter asburiae 1 3690 2608935 0 no rank 9 10140 species 831 1 Enterobacter sp. 638 399742 0 1914861 0 1 1326 Enterobacter sp. SA187 species 0 1827481 species Enterobacter sp. ODB01 1 1050 0 1166130 species Enterobacter sp. R4-368 1 1136 species 2540 1 Enterobacter sp. CRENT-193 2051905 0 0 1692238 Enterobacter sp. FY-07 1 911 species 0 1868135 Enterobacter sp. HK169 1 789 species 748 1 Enterobacter sp. E20 species 1560339 0 0 1977566 Enterobacter sp. Crenshaw 809 1 species Escherichia 5 24424 190 genus 0 1 561 0 564 Escherichia fergusonii 1083 1 species Escherichia coli 1 19916 species 0 562 2121 1 Escherichia albertii species 208962 0 species Escherichia marmotae 1114 1 0 1499973 1 83654 0 genus 128 4 4078 Leclercia 0 83655 Leclercia adecarboxylata 1 1227 species 0 2627398 2723 2 no rank 0 1920114 species Leclercia sp. LSNIH1 1553 1 species 1170 1 Leclercia sp. LSNIH3 1920116 0 0 1 1048757 Candidatus Moranella 84 2 1 genus species Candidatus Moranella endobia 1 83 0 1048758 0 1330545 1 Lelliottia 4 4364 61 genus species 1938 1 Lelliottia amnigena 61646 0 Lelliottia jeotgali 862 1 species 0 1907578 1 1503 Lelliottia nimipressuralis species 69220 0 322 genus Shigella 4 3838 0 1 620 0 2629414 1 1252 no rank species Shigella sp. PAMC 28760 1252 1 0 1813821 species Shigella flexneri 899 1 0 623 species Shigella dysenteriae 1365 1 0 622 genus 150 1 0 401618 species 1 150 Candidatus Riesia pediculicola 401619 0 261 genus Cronobacter 9853 8 0 413496 1 413497 0 species 1 1447 Cronobacter dublinensis 2166 1 Cronobacter sakazakii species 28141 0 Cronobacter muytjensii 1 1509 species 0 413501 413503 0 species 1 1136 Cronobacter malonaticus 1163710 0 1 1048 Cronobacter condimenti species 1181 1 Cronobacter universalis species 535744 0 Cronobacter turicensis 1 1105 species 0 413502 no rank 1717 19 0 191675 0 84563 clade 1717 19 116 1 clade 0 199891 0 1835721 species secondary endosymbiont of Trabutina mannipara 116 1 1 genus Candidatus Mikella 2 100 0 1906660 1 1 99 Candidatus Mikella endobia species 1778264 0 1906659 1 0 genus 1 2 133 Candidatus Hoaglandella 1778263 0 132 1 Candidatus Hoaglandella endobia species 509 7 clade 0 84564 genus 2 7 509 Candidatus Blochmannia 1 203804 0 species Candidatus Blochmannia chromaiodes 1 59 0 251542 Candidatus Blochmannia vafer 1 105 species 0 251535 species Candidatus Blochmannia pennsylvanicus 1 65 0 101534 0 711328 no rank 171 2 0 1505597 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 120 1 species 0 1505596 species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 51 203907 0 1 107 Candidatus Blochmannia floridanus species 0 1906661 genus 1 127 species Candidatus Gullanella endobia 1 127 0 1070130 1682492 0 1 107 genus 0 1410383 species Candidatus Tachikawaea gelatinosa 1 107 1906657 1 0 genus 1 2 112 Candidatus Doolittlea 1778262 0 species 111 1 Candidatus Doolittlea endobia 146507 0 513 3 clade 134287 0 species 1 92 secondary endosymbiont of Heteropsylla cubana species 1 243 secondary endosymbiont of Ctenarytaina eucalypti 1199245 0 0 568987 178 1 genus 1 178 Candidatus Hamiltonella defensa species 138072 0 family 108 23917 28 Erwiniaceae 1 1903409 0 0 2100764 3447 2 genus Pantoea calida 1 1765 species 0 665913 species 1682 1 Pantoea gaviniae 665914 0 Erwinia 6080 8 251 genus 0 1 551 2622719 0 no rank 856 1 species Erwinia sp. Ejp617 856 1 0 215689 1 915 Erwinia tasmaniensis species 338565 0 0 552 Erwinia amylovora 1 642 species 0 1922217 species Candidatus Erwinia sp. ErCipseudotaxifoliae 1 118 1619313 0 1253 1 Erwinia gerundensis species 0 182337 species Erwinia billingiae 1 1300 species 745 1 Erwinia pyrifoliae 79967 0 Wigglesworthia 2 169 2 genus 0 51228 1 0 51229 Wigglesworthia glossinidia 167 1 species 0 32199 1 3 genus Buchnera 2 1108 0 9 Buchnera aphidicola 1105 1 species 0 1 82986 Tatumella 633 2 20 genus 0 53336 Tatumella citrea 1 613 species 1 53335 0 genus 442 12372 11 Pantoea 1654067 0 1941 1 species group 0 549 species Pantoea agglomerans 1 1941 species 1 1095 Pantoea ananatis 553 0 species Candidatus Pantoea carbekii 119 1 0 1235990 species Pantoea alhagi 1 875 0 1891675 3 4145 no rank 0 2630326 Pantoea sp. At-9b 1168 1 species 0 592316 species 1 1251 Pantoea sp. PSNIH1 1484158 0 0 1484157 species Pantoea sp. PSNIH2 1726 1 66269 0 667 1 Pantoea stewartii species 1 885 Pantoea rwandensis species 1076550 0 Pantoea vagans 2203 1 species 0 470934 0 1903410 1 136 family Pectobacteriaceae 23456 20 0 1 122277 Pectobacterium 9310 6 317 genus 554 0 species 4150 1 Pectobacterium carotovorum species Pectobacterium parmentieri 822 1 0 1905730 55208 0 819 1 Pectobacterium wasabiae species species Pectobacterium polaris 1 2092 0 2042057 Pectobacterium atrosepticum 1110 1 species 0 29471 genus 345 6 9748 Dickeya 1 204037 0 204042 0 1 1882 Dickeya zeae species 204038 0 species 1637 1 Dickeya dadantii species Dickeya solani 2956 1 0 1089444 1 1599 Dickeya fangzhongdai species 1778540 0 0 204039 species Dickeya dianthicola 1 1329 7 genus Brenneria 2 1568 0 71655 1 0 1109412 species Brenneria goodwinii 1561 1 5 2694 Sodalis genus 115 84565 1 0 0 1929246 species Sodalis endosymbiont of Henestaris halophilus 1 96 0 63612 species Sodalis glossinidius 813 1 Candidatus Sodalis pierantonius 635 1 species 0 1486991 species 1 1035 Sodalis praecaptivus 1239307 0 Morganellaceae 21 9023 34 family 0 1 1903414 genus 25 1783 4 Providencia 586 1 0 species Providencia rettgeri 1 349 0 587 0 588 species Providencia stuartii 1 1141 species Providencia alcalifaciens 268 1 0 126385 1 581 0 genus 58 2 1931 Morganella Morganella morganii 1873 1 species 0 582 1 626 0 2525 6 Xenorhabdus genus 25 628 0 species 611 1 Xenorhabdus nematophila 0 351671 species Xenorhabdus doucetiae 1 390 species Xenorhabdus poinarii 1 404 0 40577 351679 0 1 407 Xenorhabdus hominickii species 688 1 Xenorhabdus bovienii species 40576 0 32 genus Photorhabdus 1380 4 0 1 29487 0 291112 species Photorhabdus asymbiotica 1 381 0 29488 Photorhabdus luminescens 549 1 species 574560 0 species 418 1 Photorhabdus temperata genus 1 157 637 0 species 1 157 Arsenophonus symbiont of Lipoptena fortisetosa 634113 0 genus 38 1213 3 Proteus 1 583 0 0 584 species Proteus mirabilis 748 1 0 585 species Proteus vulgaris 1 427 0 1903416 2 438 family genus 12 2 438 Pragia 1 82984 0 species Pragia fontium 1 426 0 82985 0 1903411 1 Yersiniaceae 51030 39 197 family 0 1 34037 Rahnella 4 3104 88 genus 2 1999 no rank 0 2635087 species 1 943 Rahnella sp. Y9602 741091 0 1056 1 Rouxiella sp. ERMR1:05 species 1805933 0 34038 0 1 1017 Rahnella aquatilis species 1385 genus Serratia 37198 16 0 613 1 0 61652 Serratia rubidaea 2072 1 species Serratia plymuthica 1 4260 species 0 82996 47917 0 species 1 2471 Serratia fonticola 0 614 Serratia liquefaciens 1 1692 species 12498 8 no rank 0 2647522 species Serratia sp. SSNIH1 2178 1 0 1758196 species Serratia sp. SCBI 1 2031 0 488142 0 104623 Serratia sp. ATCC 39006 849 1 species species 1 2412 Serratia sp. FS14 1327989 0 768490 0 876 1 Serratia sp. AS12 species 0 768493 Serratia sp. AS13 876 1 species 1655 1 Serratia sp. FGI94 species 671990 0 2033438 0 1 1621 Serratia sp. MYb239 species species Serratia proteamaculans 1 1330 0 28151 species Serratia marcescens 9563 1 0 615 species 1 1927 Serratia ficaria 61651 0 genus 11 2 857 Chania 1 1745211 0 species 1 846 Chania multitudinisentens 1639108 0 Yersinia 13 8171 301 genus 0 1 629 631 0 499 1 Yersinia intermedia species 0 2653513 no rank 1 476 476 1 Yersinia sp. FDAARGOS_228 species 1839800 0 species Yersinia aldovae 1 472 0 29483 1649845 0 3 1688 species group species 508 1 Yersinia pestis 632 0 Yersinia similis 1 484 species 0 367190 633 0 species 1 696 Yersinia pseudotuberculosis 1 1495 Yersinia enterocolitica species 630 0 Yersinia aleksiciae 1 499 species 0 263819 29485 0 species 1 570 Yersinia rohdei 0 29486 species Yersinia ruckeri 1 469 0 29484 Yersinia frederiksenii 1286 1 species 416 1 Yersinia kristensenii species 28152 0 1 929812 0 genus 4 2 1449 Gibbsiella 0 929813 species Gibbsiella quercinecans 1445 1 genus Rouxiella 1 54 0 1565532 0 1 1934945 22 order Immundisolibacterales 4 1953 family 50 1931 3 Immundisolibacteraceae 1934946 1 0 23 genus Immundisolibacter 2 1881 0 1 1934947 0 1810504 species Immundisolibacter cernigliae 1858 1 Acidiferrobacterales 6 2813 77 order 0 1 1692040 Acidiferrobacteraceae 5 2736 44 family 0 1 1692041 0 1744881 1 Sulfuricaulis 2 1546 57 genus species 1 1489 Sulfuricaulis limicola 1620215 0 genus 25 2 1146 Sulfurifustis 1692042 1 0 1675686 0 species 1121 1 Sulfurifustis variabilis 0 1 135614 Xanthomonadales 53 81240 786 order 156 family Rhodanobacteraceae 13356 14 0 1775411 1 0 1 323413 35 genus Dokdonella 2 1735 species 1 1700 Dokdonella koreensis 323415 0 Luteibacter 1325 2 29 genus 0 1 242605 0 242606 species Luteibacter rhizovicinus 1296 1 1 231454 0 6153 4 Dyella genus 86 1379159 0 1651 1 Dyella jiangningensis species 0 445710 species Dyella thiooxydans 1 2167 0 231455 Dyella japonica 1 2249 species 2233801 0 genus 747 1 species Xanthomonadales bacterium D13 747 1 0 2021234 genus 8 2 1150 Frateuria 1 70411 0 0 81475 Frateuria aurantia 1 1142 species 1 75309 0 2 2090 Rhodanobacter genus 16 species 2074 1 Rhodanobacter denitrificans 666685 0 family 847 67098 38 Xanthomonadaceae 32033 1 0 1 83618 0 genus 75 5524 3 Pseudoxanthomonas 0 314722 species Pseudoxanthomonas suwonensis 1 3809 species 1 1640 Pseudoxanthomonas spadix 415229 0 17 26218 Xanthomonas genus 1581 338 1 0 0 1985254 Xanthomonas phaseoli 1 769 species 0 347 species Xanthomonas oryzae 1894 1 56460 0 species 1120 1 Xanthomonas vesicatoria 1 871 Xanthomonas vasicola species 56459 0 48664 0 species 587 1 Xanthomonas fragariae species 1 1202 Xanthomonas hortorum 56454 0 Xanthomonas euvesicatoria 1 911 species 0 456327 species Xanthomonas albilineans 954 1 0 29447 0 366650 species Xanthomonas alfalfae 968 1 0 339 species Xanthomonas campestris 3751 1 1 1285 Xanthomonas perforans species 442694 0 species 1 836 Xanthomonas axonopodis 53413 0 56458 0 species 1 1977 Xanthomonas sacchari Xanthomonas translucens 2444 1 species 0 343 643453 0 species group 2 5068 0 366648 species Xanthomonas fuscans 1374 1 species Xanthomonas citri 1 3694 0 346 1 83614 0 2 1119 Luteimonas genus 8 Luteimonas sp. 100111 1 1111 species 0 2006110 9 24692 Stenotrophomonas genus 400 40323 1 0 species 1648 1 Stenotrophomonas rhizophila 216778 0 Stenotrophomonas nitritireducens 1 1581 species 0 83617 995085 0 species group 1 11073 40324 0 species 1 11073 Stenotrophomonas maltophilia 0 196198 4 6908 no rank 1 1701 Stenotrophomonas sp. WZN-1 species 2005046 0 0 1827305 species Stenotrophomonas sp. MYb57 1476 1 0 1904944 Stenotrophomonas sp. LM091 2041 1 species species Stenotrophomonas sp. KCTC 12332 1 1690 0 1793721 128780 0 species 1 3082 Stenotrophomonas acidaminiphila 647 1 genus 0 2370 2371 0 species 647 1 Xylella fastidiosa genus 146 5 8051 Lysobacter 1 68 0 1 1869 Lysobacter gummosus species 262324 0 Lysobacter capsici 2092 1 species 0 435897 1 2002 Lysobacter antibioticus species 84531 0 69 0 1942 1 Lysobacter enzymogenes species order 15 1087 4 Nevskiales 1775403 1 0 0 2689614 2 1062 family 0 1 469322 Steroidobacter 2 1062 7 genus 1 1055 Steroidobacter denitrificans species 465721 0 family 10 1 Sinobacteraceae 568386 0 278 4 Cardiobacteriales order 4 1 135615 0 274 3 Cardiobacteriaceae family 3 1 868 0 2 271 Dichelobacter genus 4 1 869 0 0 870 Dichelobacter nodosus 1 267 species 430 order Oceanospirillales 40205 69 0 135619 1 2 family Hahellaceae 3 1086 0 1 224379 0 1 158481 5 genus Hahella 1084 2 158327 0 species 1079 1 Hahella chejuensis 379 family Halomonadaceae 30 24903 0 28256 1 0 1 204286 9 genus Cobetia 2 1750 0 28258 Cobetia marina 1741 1 species 0 404432 1 25 genus Salinicola 2 1527 1771309 0 1 1502 Salinicola tamaricis species 504090 1 0 2429 3 Kushneria genus 12 698828 0 1133 1 Kushneria konosiri species 157779 0 1284 1 Kushneria marisflavi species 279 genus Halomonas 15 16269 0 1 2745 0 1178482 species Halomonas huangheensis 866 1 0 2609666 no rank 7501 8 species 1581 1 Halomonas sp. SF2003 2136172 0 0 1504981 Halomonas sp. KO116 786 1 species 0 1610576 species Halomonas sp. R57-5 1043 1 1962264 0 species 1 616 Halomonas sp. 'Soap Lake #7' 0 1971364 Halomonas sp. GT 446 1 species 1118153 0 395 1 Halomonas sp. GFAJ-1 species 1883416 0 2018 1 Halomonas sp. 1513 species 1949203 0 1 616 Halomonas sp. 'Soap Lake #6' species 0 213554 Halomonas campaniensis 441 1 species 475662 0 species 1 2316 Halomonas beimenensis 0 1897729 species Halomonas aestuarii 2024 1 0 115561 Halomonas hydrothermalis 1 1304 species 0 507626 species Halomonas chromatireducens 1 1538 0 1 376488 Halotalea 1285 2 73 genus species 1 1212 Halotalea alkalilenta 376489 0 1123 2 Chromohalobacter genus 7 1 42054 0 158080 0 1116 1 Chromohalobacter salexigens species 3 141 no rank 0 114403 0 1495768 genus 1 79 1495769 0 1 79 Candidatus Evansia muelleri species 39 1 genus 235572 0 1 39 Candidatus Portiera aleyrodidarum species 91844 0 genus 23 1 0 114185 23 1 Candidatus Carsonella ruddii species 114186 0 0 255527 1 11 family Saccharospirillaceae 1311 5 2 genus Gynuella 2 766 0 1445504 1 species Gynuella sunshinyii 1 764 0 1445505 1 230494 0 534 2 Reinekea genus 13 species Reinekea forsetii 1 521 0 1336806 family 35 4481 13 Oceanospirillaceae 135620 1 0 Bacterioplanes 710 2 5 genus 0 1537406 1 Bacterioplanes sanyensis 1 705 species 0 1249553 0 187492 1 Thalassolituus 446 2 1 genus 0 187493 species Thalassolituus oleivorans 1 445 0 1 188907 2 genus Oleispira 373 2 188908 0 371 1 Oleispira antarctica species genus 20 1068 4 Marinomonas 1 28253 0 936476 0 species 293 1 Marinomonas posidonica 0 119864 species Marinomonas mediterranea 1 276 479 1 no rank 196814 0 0 400668 species Marinomonas sp. MWYL1 1 479 1 48075 0 genus 12 2 1849 Marinobacterium species 1837 1 Marinobacterium aestuarii 1821621 0 family 2 372 0 191033 4 genus Oleiphilus 372 2 0 141450 1 species 368 1 Oleiphilus messinensis 141451 0 0 1 1920240 Kangiellaceae 988 6 4 family genus 29 984 5 Kangiella 1 261963 0 species Kangiella geojedonensis 1 203 0 914150 0 261964 species Kangiella koreensis 1 209 species 303 1 Kangiella profundi 1561924 0 1144748 0 species 1 240 Kangiella sediminilitoris 6634 9 Alcanivoracaceae family 31 224372 1 0 Ketobacter 2 967 2 genus 0 1 2025617 1917421 0 1 965 Ketobacter alkanivorans species 59753 1 0 5636 6 Alcanivorax genus 107 species 1 483 Alcanivorax borkumensis 59754 0 no rank 488 1 0 2638842 species Alcanivorax sp. NBRC 101098 1 488 0 1113728 0 285091 Alcanivorax dieselolei 1 1331 species species Alcanivorax pacificus 1894 1 0 1306787 0 1094342 species Alcanivorax xenomutans 1 1333 0 135622 1 Alteromonadales 38665 105 125 order 1 267892 0 3 1558 Ferrimonadaceae family 11 0 1 44011 55 genus Ferrimonas 1547 2 0 44012 Ferrimonas balearica 1 1492 species 1 267893 0 6 1084 Idiomarinaceae family 6 genus 8 5 1078 Idiomarina 135575 1 0 2 634 no rank 0 2614829 species 1 272 Idiomarina sp. X4 2055892 0 0 2100422 Idiomarina sp. OT37-5b 362 1 species 135577 0 species 236 1 Idiomarina loihiensis 1096243 0 200 1 Idiomarina piscisalsi species Shewanellaceae 9519 25 37 family 0 1 267890 112 genus Shewanella 24 9482 0 22 1 0 2018305 species Shewanella bicestrii 312 1 species 1 411 Shewanella psychrophila 225848 0 0 24 species Shewanella putrefaciens 1 310 93973 0 species 1 309 Shewanella japonica 0 60961 species Shewanella woodyi 317 1 0 359303 species Shewanella loihica 909 1 56812 0 303 1 Shewanella frigidimarina species Shewanella violacea 303 1 species 0 60217 0 192073 species Shewanella denitrificans 291 1 species 1 893 Shewanella amazonensis 60478 0 species 1 914 Shewanella baltica 62322 0 Shewanella oneidensis 1 354 species 0 70863 Shewanella halifaxensis 388 1 species 0 271098 6 1978 no rank 0 196818 Shewanella sp. W3-18-1 291 1 species 0 351745 1 351 Shewanella sp. WE21 species 2029986 0 species Shewanella sp. MR-4 339 1 0 60480 0 60481 Shewanella sp. MR-7 1 249 species 2059264 0 species 1 357 Shewanella sp. Pdp11 0 94122 Shewanella sp. ANA-3 1 391 species species 1 346 Shewanella piezotolerans 404011 0 298 1 Shewanella pealeana species 70864 0 species Shewanella sediminis 380 1 0 271097 0 260364 species Shewanella marisflavi 354 1 0 1 267889 7 family Colwelliaceae 2691 9 0 28228 1 Colwellia 6 2453 1 genus 0 1967665 Colwellia beringensis 454 1 species 28229 0 species 1 336 Colwellia psychrerythraea 196834 0 no rank 1662 3 Colwellia sp. MT41 1 841 species 0 58049 1816218 0 1 403 Colwellia sp. PAMC 20917 species 1816219 0 species 418 1 Colwellia sp. PAMC 21821 genus 16 2 231 Thalassotalea 1 1518149 0 0 1763536 species Thalassotalea crassostreae 1 215 0 1 72275 98 family Alteromonadaceae 29 15506 1 226 0 genus 38 3473 10 Alteromonas 0 715451 species Alteromonas naphthalenivorans 1 248 367 1 Alteromonas stellipolaris species 233316 0 0 28108 Alteromonas macleodii 1 874 species species Alteromonas addita 254 1 0 287094 1 703 Alteromonas mediterranea species 314275 0 no rank 3 644 2614992 0 1777491 0 species 239 1 Alteromonas sp. Mac1 198 1 Alteromonas sp. MB-3u-76 species 2058133 0 Alteromonas sp. RW2A1 207 1 species 0 1917158 Alteromonas australica 345 1 species 0 589873 Lacimicrobium 896 2 19 genus 0 1751872 1 0 1526571 Lacimicrobium alkaliphilum 877 1 species 103 genus Marinobacter 10 9446 0 1 2742 species Marinobacter similis 1 755 0 1420916 species Marinobacter hydrocarbonoclasticus 1608 1 0 2743 Marinobacter psychrophilus 1 652 species 0 330734 949 1 Marinobacter adhaerens species 1033846 0 no rank 3 3259 83889 0 0 490759 species Marinobacter sp. BSs20148 1 838 1376 1 Marinobacter sp. LQ44 species 1749259 0 1671721 0 1045 1 Marinobacter sp. CP1 species Marinobacter salinus 1 883 species 0 1874317 Marinobacter salarius 1 1237 species 0 1420917 genus 1 2 578 Agarivorans 1 261825 0 680279 0 species 1 577 Agarivorans gilvus 1621534 0 genus 1 288 0 326544 Paraglaciecola psychrophila 1 288 species 1 genus Glaciecola 3 727 0 1 89404 species Glaciecola nitratireducens 1 385 0 300231 2618684 0 no rank 341 1 Glaciecola sp. 4H-3-7+YE-5 341 1 species 0 983545 0 1 267888 19 family Pseudoalteromonadaceae 6890 25 191 genus Pseudoalteromonas 6871 24 0 1 53246 species Pseudoalteromonas arctica 239 1 0 394751 166935 0 species 1 196 Pseudoalteromonas translucida 43659 0 species 231 1 Pseudoalteromonas tetraodonis 0 1348114 Pseudoalteromonas piratica 424 1 species species Pseudoalteromonas piscicida 1 317 0 43662 Pseudoalteromonas aliena 1 258 species 0 247523 Pseudoalteromonas phenolica 1 389 species 0 161398 species Pseudoalteromonas rubra 1 352 0 43658 species 290 1 Pseudoalteromonas espejiana 28107 0 species 1 239 Pseudoalteromonas nigrifaciens 28109 0 0 152297 Pseudoalteromonas issachenkonii 1 221 species 194690 0 5 1443 no rank 0 1514074 Pseudoalteromonas sp. NC201 341 1 species species 1 300 Pseudoalteromonas sp. Bsw20308 283699 0 species 1 300 Pseudoalteromonas sp. 13-15 1761891 0 0 234831 species Pseudoalteromonas sp. SM9913 1 238 0 1720343 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 264 species 314281 0 1 292 Pseudoalteromonas tunicata species 0 43657 Pseudoalteromonas luteoviolacea 1 303 species species Pseudoalteromonas spongiae 1 445 0 298657 species 204 1 Pseudoalteromonas haloplanktis 228 0 species Pseudoalteromonas atlantica 423 1 0 288 176102 0 211 1 Pseudoalteromonas agarivorans species Pseudoalteromonas marina 1 203 species 0 267375 6 family Psychromonadaceae 895 4 0 1 267894 Psychromonas 3 889 3 genus 0 1 67572 species Psychromonas ingrahamii 533 1 0 357794 2614957 0 no rank 1 353 314282 0 353 1 Psychromonas sp. CNPT3 species 267891 1 0 3 397 Moritellaceae family 1 0 58050 1 Moritella 2 396 3 genus species 1 393 Moritella viscosa 80854 0 488 order Chromatiales 31404 52 0 1 135613 449719 1 0 855 3 Granulosicoccaceae family 1 437504 1 0 854 2 Granulosicoccus genus 1 Granulosicoccus antarcticus 853 1 species 0 437505 0 1738654 1 Woeseiaceae 558 3 2 family 2 556 Woeseia genus 3 1 1738655 0 553 1 Woeseia oceani species 1548547 0 Ectothiorhodospiraceae 13278 18 227 family 0 1 72276 Alkalilimnicola 1714 2 22 genus 0 133193 1 0 351052 Alkalilimnicola ehrlichii 1 1692 species Halorhodospira 2 1210 8 genus 0 1 85108 1 1202 Halorhodospira halophila species 1053 0 1 106633 0 6554 6 Thioalkalivibrio genus 150 2244 1 Thioalkalivibrio sulfidiphilus species 1033854 0 2621013 0 no rank 1 889 0 396595 species Thioalkalivibrio sp. K90mix 889 1 0 186931 species Thioalkalivibrio nitratireducens 1 827 1 1477 Thioalkalivibrio versutus species 106634 0 108010 0 1 967 Thioalkalivibrio paradoxus species 1 1051 0 1602 2 Ectothiorhodospira genus 13 no rank 1 1589 0 2684909 species 1589 1 Ectothiorhodospira sp. BSL-9 1442136 0 Acidihalobacter 713 2 10 genus 0 1 1765964 0 160660 Acidihalobacter prosperus 1 703 species Spiribacter 3 1258 47 genus 0 1 1335745 0 1335757 Spiribacter curvatus 768 1 species 0 1335746 Spiribacter salinus 1 443 species 0 1 1676141 10 family Wenzhouxiangellaceae 3 1338 0 1 1676142 54 genus Wenzhouxiangella 1328 2 1 1274 Wenzhouxiangella marina species 1579979 0 0 451214 no rank 2 1943 103 genus Thiohalobacter 1943 2 0 1273155 1 1 1840 Thiohalobacter thiocyanaticus species 585455 0 1 255526 0 family 14 1286 4 Halothiobacillaceae 32 genus Halothiobacillus 3 1272 0 1 109262 0 927 species Halothiobacillus neapolitanus 478 1 1 762 no rank 0 2636392 1860122 0 species 762 1 Halothiobacillus sp. LS2 18 11658 Chromatiaceae family 215 1 1046 0 1227 1 0 4 970 Nitrosococcus genus 18 0 473531 species Nitrosococcus watsonii 1 345 1229 0 236 1 Nitrosococcus oceani species species 371 1 Nitrosococcus halophilus 133539 0 1 1980513 0 2 107 Candidatus Nitrosoglobus genus 5 Candidatus Nitrosoglobus terrae 102 1 species 0 1630141 21 genus Thiodictyon 2455 2 0 1 53392 1166950 0 2434 1 Candidatus Thiodictyon syntrophicum species 0 85076 1 23 genus Marichromatium 1578 2 Marichromatium purpuratum 1555 1 species 0 37487 0 1 156885 Thioflavicoccus 2 1367 22 genus 80679 0 1 1345 Thioflavicoccus mobilis species genus 36 2 1712 Thiocystis 1 13724 0 0 73141 Thiocystis violascens 1 1676 species 1280 1 no rank 0 82569 0 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a 1 1280 species 0 1 85072 Allochromatium 2 1974 5 genus species 1 1969 Allochromatium vinosum 1049 0 0 1 72274 984 order Pseudomonadales 129 209383 Pseudomonadaceae 190700 86 1164 family 0 1 135621 351 0 subfamily 3 5568 352 1 0 3 5568 Azotobacter genus 40 0 354 Azotobacter vinelandii 1978 1 species 0 353 Azotobacter chroococcum 1 3550 species 0 1 1849530 Oblitimonas 314 2 2 genus 1697053 0 species 312 1 Oblitimonas alkaliphila 6669 genus Pseudomonas 183654 80 0 1 286 Pseudomonas antarctica 1069 1 species 0 219572 species 1 2421 Pseudomonas frederiksbergensis 104087 0 11162 2 species group 136846 0 species subgroup 9730 1 578833 0 316 0 species 1 9730 Pseudomonas stutzeri 0 74829 Pseudomonas balearica 1 1432 species 0 157783 Pseudomonas cremoricolorata 1 1176 species species Pseudomonas brassicacearum 2778 1 0 930166 1 1795 Pseudomonas psychrotolerans species 237610 0 0 101564 Pseudomonas alcaliphila 1 1585 species 0 198620 Pseudomonas koreensis 1 2115 species species group 6 25250 136841 0 0 1232139 1 2362 species subgroup species 1 2362 Pseudomonas furukawaii 1149133 0 species 1 2094 Pseudomonas resinovorans 53412 0 300 0 6674 1 Pseudomonas mendocina species species 3847 1 Pseudomonas citronellolis 53408 0 species 1 8266 Pseudomonas aeruginosa 287 0 1 2007 Pseudomonas alcaligenes species 43263 0 237609 0 species 1049 1 Pseudomonas alkylphenolica 157782 0 species 1 1945 Pseudomonas parafulva 1788301 0 species 660 1 Pseudomonas versuta 136845 0 species group 28364 6 species 2964 1 Pseudomonas mosselii 78327 0 303 0 species 16503 1 Pseudomonas putida 0 47880 species Pseudomonas fulva 2271 1 species 1140 1 Pseudomonas plecoglossicida 70775 0 1 1516 Pseudomonas oryzihabitans species 47885 0 76759 0 species 1 3970 Pseudomonas monteilii species group 16317 8 136849 0 3176 2 species subgroup 251698 0 47877 0 1 1502 Pseudomonas amygdali species 0 29438 species Pseudomonas savastanoi 1 1674 0 251701 Pseudomonas syringae group genomosp. 3 2169 1 species 0 46257 Pseudomonas avellanae 1137 1 species 2775504 0 no rank 1 674 1 674 Pseudomonas sp. Lz4W species 1206777 0 species subgroup 6939 1 0 251695 6939 1 Pseudomonas syringae species 317 0 33069 0 species 1222 1 Pseudomonas viridiflava 36746 0 species 1000 1 Pseudomonas cichorii 0 1583341 species Pseudomonas cerasi 1283 1 0 196821 no rank 30 38394 1415630 0 861 1 Pseudomonas sp. TKP species species 1515 1 Pseudomonas sp. FGI182 1259844 0 species 2049 1 Pseudomonas sp. URMO17WK12:I11 1283291 0 species 1 422 Pseudomonas sp. M30-35 1981174 0 1207075 0 species 1 914 Pseudomonas sp. UW4 Pseudomonas sp. LG1D9 916 1 species 0 2083054 1649877 0 species 1585 1 Pseudomonas sp. CCOS 191 0 2083055 Pseudomonas sp. LH1G9 1479 1 species 1 1140 Pseudomonas sp. VLB120 species 69328 0 1028989 0 species 1619 1 Pseudomonas sp. StFLB209 Pseudomonas sp. SWI6 956 1 species 0 2083051 1 1432 Pseudomonas sp. PONIH3 species 1636610 0 species Pseudomonas sp. LPH1 1514 1 0 1898684 0 2069256 species Pseudomonas sp. XWY-1 1 1213 1827300 0 species 853 1 Pseudomonas sp. MYb193 0 1856685 species Pseudomonas sp. TCU-HL1 1754 1 0 1338689 species Pseudomonas sp. JY-Q 1 1195 2083053 0 1 1014 Pseudomonas sp. SWI44 species 2049589 0 874 1 Pseudomonas sp. HLS-6 species 1534110 0 species 976 1 Pseudomonas sp. DR 5-09 0 1611770 species Pseudomonas sp. MRSN12121 1761 1 0 1930532 Pseudomonas sp. CC6-YY-74 1 1256 species 0 1659194 Pseudomonas sp. GR 6-02 1 815 species 1294143 0 2319 1 Pseudomonas sp. ATCC 13867 species species Pseudomonas sp. NC02 1117 1 0 2067572 1931241 0 1132 1 Pseudomonas sp. S-6-2 species 1352 1 Pseudomonas sp. SWI36 species 2083052 0 species 1 1762 Pseudomonas sp. St29 1500687 0 0 1500686 species Pseudomonas sp. Os17 1 1640 959 1 Pseudomonas sp. FDAARGOS_380 species 2018067 0 species Pseudomonas entomophila 1 1231 0 312306 species group 2 9418 0 136842 0 587753 Pseudomonas chlororaphis 1 7750 species species Pseudomonas fragi 1668 1 0 296 244566 0 1 803 Pseudomonas lurida species species 1 977 Pseudomonas silesiensis 1853130 0 species group 24115 9 136843 0 294 0 species 13361 1 Pseudomonas fluorescens 47879 0 1 1108 Pseudomonas corrugata species 0 200451 species Pseudomonas poae 932 1 1 2258 Pseudomonas protegens species 380021 0 0 76761 Pseudomonas veronii 987 1 species Pseudomonas azotoformans 1 1956 species 0 47878 species Pseudomonas mandelii 1 1106 0 75612 1188 1 Pseudomonas trivialis species 200450 0 species Pseudomonas orientalis 1 1219 0 76758 1 1275 Pseudomonas rhizosphaerae species 216142 0 species Pseudomonas knackmussii 1803 1 0 65741 1 468 0 17699 42 Moraxellaceae family 47 genus 26 2437 11 Psychrobacter 497 1 0 45610 0 species 1 208 Psychrobacter urativorans species 1 304 Psychrobacter arcticus 334543 0 0 196806 no rank 6 1426 1 261 Psychrobacter sp. P11G5 species 1699624 0 1699622 0 258 1 Psychrobacter sp. P2G3 species 0 1720344 Psychrobacter sp. AntiMn-1 380 1 species Psychrobacter sp. PRwf-1 196 1 species 0 349106 147 1 Psychrobacter sp. DAB_AL43B species 1028416 0 Psychrobacter sp. G 184 1 species 0 571800 0 261164 Psychrobacter alimentarius 1 293 species 330922 0 1 180 Psychrobacter cryohalolentis species genus 291 25 13070 Acinetobacter 1 469 0 species 1 494 Acinetobacter soli 487316 0 29430 0 species 1 977 Acinetobacter haemolyticus 461 1 Acinetobacter bereziniae species 106648 0 0 196816 7 2496 no rank 1 430 Acinetobacter sp. TGL-Y2 species 1407071 0 1808001 0 species 437 1 Acinetobacter sp. LoGeW2-3 Acinetobacter sp. ACNIH2 253 1 species 0 1758189 0 1636603 species Acinetobacter sp. ACNIH1 1 509 species Acinetobacter sp. SWBY1 1 364 0 2079596 0 1608473 species Acinetobacter sp. NCu2D-2 1 266 1646498 0 237 1 Acinetobacter sp. TTH0-4 species 0 909768 5 4162 species group 470 0 species 1603 1 Acinetobacter baumannii 106654 0 1 529 Acinetobacter nosocomialis species 1785128 0 1 208 Acinetobacter lactucae species 0 471 Acinetobacter calcoaceticus 1 685 species 48296 0 species 1137 1 Acinetobacter pittii 1148157 0 362 1 Acinetobacter oleivorans species species Acinetobacter schindleri 1 1036 0 108981 Acinetobacter larvae 1 229 species 0 1789224 Acinetobacter equi 380 1 species 0 1324350 419 1 Acinetobacter junii species 40215 0 species Acinetobacter indicus 523 1 0 756892 1 421 species 0 202950 strain Acinetobacter sp. ADP1 1 421 0 62977 0 40216 Acinetobacter radioresistens 1 454 species 0 40214 Acinetobacter johnsonii 365 1 species Moraxella 2145 5 20 genus 0 1 475 386891 0 1 596 Moraxella bovoculi species 34062 0 1 846 Moraxella osloensis species 0 480 Moraxella catarrhalis 1 447 species species Moraxella ovis 236 1 0 29433 no rank 13 3623 0 118884 0 198346 clade 229 1 186490 0 1 229 Candidatus Baumannia cicadellinicola species 0 1 1524249 5 genus Pseudohongiella 612 2 0 1249552 species Pseudohongiella spirulinae 607 1 clade 422 4 0 32036 0 1541743 1 1 genus Candidatus Ruthia 2 143 1 142 Candidatus Ruthia magnifica species 386487 0 Bathymodiolus septemdierum thioautotrophic gill symbiont 1 190 species 0 113267 410330 0 89 1 Calyptogena okutanii thioautotrophic gill symbiont species 2 1076 Thiolapillus genus 9 1 1608298 0 species 1 1067 Thiolapillus brandeum 1076588 0 0 655184 genus 398 2 0 1705394 Candidatus Thioglobus autotrophicus 173 1 species Candidatus Thioglobus singularis 1 225 species 0 1427364 Sedimenticola 2 886 8 genus 0 1 349742 1543721 0 878 1 Sedimenticola thiotaurini species 1706369 1 0 order 68 10316 29 Cellvibrionales 1706373 1 0 3001 5 Microbulbiferaceae family 12 0 1 48073 26 genus Microbulbifer 2989 4 Microbulbifer agarilyticus 1 842 species 0 260552 species 1045 1 Microbulbifer aggregans 1769779 0 0 252514 Microbulbifer thermotolerans 1076 1 species Cellvibrionaceae 4518 12 53 family 0 1 1706371 0 1 2036021 Agarilytica 2 391 5 genus species Agarilytica rhodophyticola 386 1 0 1737490 Simiduia 2 783 5 genus 0 1 447467 0 447471 species Simiduia agarivorans 778 1 1 10 0 4 2439 Cellvibrio genus 24 species Cellvibrio japonicus 1 964 0 155077 2 1451 no rank 2624793 0 Cellvibrio sp. PSBB006 939 1 species 0 1987723 1945512 0 512 1 Cellvibrio sp. PSBB023 species 316625 0 genus 384 1 species Saccharophagus degradans 384 1 0 86304 0 1 2425 Teredinibacter 468 2 2 genus 0 2426 species Teredinibacter turnerae 466 1 0 1 1706372 Halieaceae 4 1450 28 family genus 24 3 1422 Halioglobus 1 1217416 0 930806 0 1 711 Halioglobus pacificus species species Halioglobus japonicus 1 687 0 930805 0 1 1706375 Spongiibacteraceae 1279 7 15 family 1084558 1 0 genus 19 510 2 Oceanicoccus 716816 0 species 1 491 Oceanicoccus sagamiensis 0 1 1434050 23 genus Zhongshania 499 2 1470434 0 1 476 Zhongshania aliphaticivorans species 1 630749 0 genus 18 255 2 Spongiibacter 237 1 no rank 0 2631504 species Spongiibacter sp. IMCC21906 1 237 0 1620392 0 135625 1 Pasteurellales 32 28993 14 order family 455 31 28979 Pasteurellaceae 1 712 0 0 155493 1 Gallibacterium 567 2 2 genus 0 750 species Gallibacterium anatis 1 565 0 697331 1 2 genus Basfia 538 2 species 536 1 [Mannheimia] succiniciproducens 157673 0 17892 6 Haemophilus genus 8 1 724 0 species Haemophilus pittmaniae 1 1104 0 249188 Haemophilus parainfluenzae 1 14020 species 0 729 Haemophilus influenzae 1806 1 species 0 727 664 1 no rank 2609962 0 712310 0 1 664 Haemophilus sp. oral taxon 036 species 1 290 [Haemophilus] ducreyi species 730 0 12 genus Mannheimia 4 1936 0 1 75984 1 481 no rank 0 2645054 species Mannheimia sp. USDA-ARS-USMARC-1261 1 481 0 1432056 0 85404 species Mannheimia varigena 788 1 655 1 Mannheimia haemolytica species 75985 0 genus 598 1 0 214906 species 598 1 Histophilus somni 731 0 0 1 416916 Aggregatibacter 3 1530 23 genus species Aggregatibacter actinomycetemcomitans 642 1 0 714 0 732 Aggregatibacter aphrophilus 1 865 species Bibersteinia 2 988 1 genus 0 1 476528 47735 0 987 1 Bibersteinia trehalosi species 0 1 713 Actinobacillus 2170 5 24 genus Actinobacillus equuli 1 512 species 0 718 67854 0 1 517 Actinobacillus succinogenes species 715 0 1 656 Actinobacillus pleuropneumoniae species 1 461 Actinobacillus suis species 716 0 1 genus Glaesserella 701 2 0 1 2094023 species 700 1 Glaesserella parasuis 738 0 1 745 0 1604 3 Pasteurella genus 3 1230 1 Pasteurella multocida species 747 0 species Pasteurella dagmatis 371 1 0 754 0 135618 1 Methylococcales 12 6439 41 order 83 family Methylococcaceae 11 6398 0 1 403 0 39773 genus 658 1 Methylomicrobium alcaliphilum 1 658 species 0 271065 0 762296 1 Methylovulum 2 759 4 genus 1 755 Methylovulum psychrotolerans species 1704499 0 genus 11 1311 2 Methylococcus 413 1 0 414 0 1300 1 Methylococcus capsulatus species 5 3587 Methylomonas genus 74 1 416 0 Methylomonas methanica 777 1 species 0 421 0 1538553 species Methylomonas denitrificans 1 659 0 2608980 1097 1 no rank 1727196 0 species 1 1097 Methylomonas sp. DH-1 species Methylomonas koyamae 1 980 0 702114 0 135624 1 315 order Aeromonadales 29 50966 family 504 28 50651 Aeromonadaceae 84642 1 0 Oceanimonas 2378 2 11 genus 0 1 129577 2636315 0 no rank 2367 1 1 2367 Oceanimonas sp. GK1 species 511062 0 8 genus Tolumonas 760 2 0 1 43947 0 43948 species Tolumonas auensis 1 752 1 642 0 genus 2603 43430 18 Aeromonas 645 0 species 1 3872 Aeromonas salmonicida 558964 0 species 1 1688 Aeromonas aquatica 0 644 Aeromonas hydrophila 10039 1 species species Aeromonas veronii 4069 1 0 654 species 1 1623 Aeromonas media 651 0 species Aeromonas rivipollensis 2092 1 0 948519 species 1 2241 Aeromonas dhakensis 196024 0 Aeromonas schubertii 1 1837 species 0 652 0 648 Aeromonas caviae 1 1435 species 257493 0 11931 8 no rank species Aeromonas sp. ASNIH4 1878 1 0 1636609 1636607 0 species 1 1411 Aeromonas sp. ASNIH2 0 1636608 Aeromonas sp. ASNIH3 1277 1 species 1 1148 Aeromonas sp. ASNIH7 species 1920107 0 1636606 0 1407 1 Aeromonas sp. ASNIH1 species 0 2033033 species Aeromonas sp. CU5 1 1292 0 2033032 Aeromonas sp. CA23 1 1909 species 1758179 0 species 1 1609 Aeromonas sp. ASNIH5 225143 1 0 3 740 Oceanisphaera genus 2 species Oceanisphaera sp. AMac2203 1 194 0 1903694 0 1416627 species Oceanisphaera profunda 544 1 2839 2 Zobellella genus 63 1 347533 0 species Zobellella denitrificans 2776 1 0 347534 0 135623 1 Vibrionales 23736 44 22 order 0 1 641 143 family Vibrionaceae 43 23714 7 genus Aliivibrio 1173 4 0 1 511678 0 80852 species Aliivibrio wodanis 362 1 species 1 368 Aliivibrio salmonicida 40269 0 0 668 species Aliivibrio fischeri 1 436 657 1 0 2199 4 Photobacterium genus 15 species 986 1 Photobacterium gaetbulicola 1295392 0 Photobacterium profundum 1 596 species 0 74109 38293 0 species 602 1 Photobacterium damselae 1 662 0 30 19374 Vibrio genus 317 species group 1 342 1891919 0 species 342 1 Vibrio tubiashii 29498 0 0 672 Vibrio vulnificus 1 1581 species 0 28173 species Vibrio nigripulchritudo 495 1 52443 0 species 439 1 Vibrio tapetis 0 674 Vibrio mimicus 689 1 species 771 2 no rank 0 2614977 0 1116375 species Vibrio sp. EJY3 289 1 Vibrio sp. 2521-89 1 482 species 0 2014742 species 1 223 Vibrio tasmaniensis 212663 0 0 1534743 Vibrio hyugaensis 391 1 species 7066 10 species group 717610 0 669 0 species 689 1 Vibrio harveyi Vibrio parahaemolyticus 1208 1 species 0 670 species 1 687 Vibrio natriegens 691 0 190895 0 species 452 1 Vibrio rotiferianus 0 663 Vibrio alginolyticus 1 1191 species 680 0 1 1015 Vibrio campbellii species 0 766224 Vibrio jasicida 1 374 species 2315253 0 2 887 species subgroup species Vibrio diabolicus 1 594 0 50719 0 150340 Vibrio antiquarius 293 1 species species 563 1 Vibrio owensii 696485 0 species 413 1 Vibrio scophthalmi 45658 0 0 1435069 species Vibrio tritonius 1 605 687 0 495 1 Vibrio gazogenes species 55601 0 species 1 949 Vibrio anguillarum 29494 0 793 1 Vibrio furnissii species 0 676 species Vibrio fluvialis 912 1 0 553239 Vibrio breoganii 1 571 species 0 666 species Vibrio cholerae 1 1049 0 190893 species Vibrio coralliilyticus 987 1 0 2025808 Vibrio qinghaiensis 286 1 species 0 1 246861 14 genus Grimontia 621 2 673 0 species 607 1 Grimontia hollisae 204 2 Paraphotobacterium genus 1 1 2042066 0 Paraphotobacterium marinum 203 1 species 0 1755811 Legionellales 20 5171 6 order 0 118969 1 554 4 Coxiellaceae family 6 118968 1 0 genus 2 457 776 0 0 777 Coxiella burnetii 378 1 species 1 79 no rank 2676648 0 species Coxiella endosymbiont of Amblyomma americanum 1 79 0 325775 0 134284 no rank 91 1 0 1592897 Coxiella-like endosymbiont 1 91 species family 15 4611 15 Legionellaceae 1 444 0 0 1 445 Legionella 4329 12 30 genus 29423 0 260 1 Legionella oakridgensis species 66969 0 309 1 Legionella waltersii species species 1 238 Legionella lansingensis 45067 0 449 0 species 1 382 Legionella hackeliae species 1 272 Legionella longbeachae 450 0 1 1558 Legionella pneumophila species 446 0 282 1 Legionella clemsonensis species 1867846 0 species 1 240 Legionella fallonii 96230 0 Legionella endosymbiont of Polyplax serrata 139 1 species 0 2005262 species 326 1 Legionella spiritensis 452 0 species 293 1 Legionella sainthelensi 28087 0 2 genus Tatlockia 2 267 0 1 465 1 265 Tatlockia micdadei species 451 0 0 1 28211 1963 class Alphaproteobacteria 500672 559 0 1 204441 Rhodospirillales 67 75995 980 order Rhodospirillaceae 45708 31 872 family 0 1 41295 1 171436 0 genus 37 2 2437 Tistrella species Tistrella mobilis 2400 1 0 171437 1 1263978 0 229 2 Candidatus Endolissoclinum genus 1 1263979 0 species 1 228 Candidatus Endolissoclinum faulkneri 1 1081 0 genus 51 4336 3 Rhodospirillum 0 1085 species Rhodospirillum rubrum 1736 1 0 34018 species Rhodospirillum centenum 2549 1 152 genus Magnetospirillum 5 10313 0 13134 1 species Magnetospirillum gryphiswaldense 2959 1 0 55518 no rank 2 4692 0 2617991 1663591 0 species 1 2379 Magnetospirillum sp. XM-1 1639348 0 2313 1 Magnetospirillum sp. ME-1 species 1 2510 Magnetospirillum magneticum species 84159 0 genus 4 2 431 Haematospirillum 1 1804663 0 1549855 0 species 1 427 Haematospirillum jordaniae 0 1 1612157 9 genus Pararhodospirillum 2 1093 1084 1 Pararhodospirillum photometricum species 1084 0 0 191 1 Azospirillum 5 16875 278 genus 1583 1 Azospirillum humicireducens species 1226968 0 species Azospirillum lipoferum 1 6114 0 193 species Azospirillum brasilense 1 5390 0 192 species 1 3510 Azospirillum thiophilum 528244 0 genus 13 2 2188 Niveispirillum 1 1543704 0 1612173 0 species 1 2175 Niveispirillum cyanobacteriorum Nitrospirillum 3742 2 69 genus 0 1 1543705 Nitrospirillum amazonense 3673 1 species 0 28077 genus 5 975 2 Magnetospira 1 1182780 0 0 2685734 1 970 no rank 970 1 Magnetospira sp. QH-2 species 1288970 0 27 genus Thalassospira 2217 3 0 1 168934 2048283 0 1157 1 Thalassospira sp. CSC3H3 species Thalassospira xiamenensis 1 1033 species 0 220697 35 29307 Acetobacteraceae family 388 1 433 0 93 genus Acetobacter 6497 8 0 434 1 446692 0 934 1 Acetobacter senegalensis species species 1 914 Acetobacter tropicalis 104102 0 151157 0 subgenus 1 842 1 842 Acetobacter aceti species 435 0 species 1975 1 Acetobacter pasteurianus 438 0 0 65959 Acetobacter pomorum 475 1 species 0 1633874 Acetobacter oryzifermentans 511 1 species 0 1076596 Acetobacter persici 753 1 species 2 1491 Gluconacetobacter genus 31 89583 1 0 Gluconacetobacter diazotrophicus 1 1460 species 0 33996 genus 36 2255 2 Granulibacter 1 364409 0 364410 0 species 2219 1 Granulibacter bethesdensis Komagataeibacter 5314 5 112 genus 0 1 1434011 1111 1 Komagataeibacter nataicola species 265960 0 0 33995 species Komagataeibacter europaeus 809 1 1177712 0 732 1 Komagataeibacter medellinensis species 0 28448 species Komagataeibacter xylinus 2550 1 0 1 320496 4 genus Neoasaia 1084 2 0 320497 species Neoasaia chiangmaiensis 1080 1 1 125216 0 3 4891 Roseomonas genus 113 0 2617492 2482 1 no rank 0 2018065 Roseomonas sp. FDAARGOS_362 1 2482 species species 1 2296 Roseomonas gilardii 257708 0 Kozakia 2 932 1 genus 0 1 153497 0 153496 Kozakia baliensis 931 1 species 0 1 1602345 1 genus Parasaccharibacter 2 669 1 668 Parasaccharibacter apium species 1510841 0 57 genus Gluconobacter 2659 3 0 1 441 species Gluconobacter oxydans 1 1752 0 442 318683 0 850 1 Gluconobacter albidus species 0 1 91914 1 genus Asaia 2 826 1 825 Asaia bogorensis species 91915 0 0 522 1 Acidiphilium 3 2301 62 genus species Acidiphilium cryptum 1 1109 0 524 0 62140 species Acidiphilium multivorum 1 1130 0 255473 order 3 363 1 255474 0 family 3 3 363 Parvularculaceae 208215 1 0 genus 5 360 2 Parvularcula 0 208216 species Parvularcula bermudensis 355 1 204455 1 0 89765 93 Rhodobacterales order 481 0 31989 1 1475 family Rhodobacteraceae 92 89284 Marivivens 591 2 2 genus 0 1 1759396 no rank 1 589 2622455 0 0 1920883 Marivivens sp. JLT3646 1 589 species Marinovum 2 2189 29 genus 0 1 367771 species 2160 1 Marinovum algicola 42444 0 2 3666 genus 0 263377 2640570 0 1 1888 no rank species Yangia sp. CCB-MM3 1 1888 0 1792508 1229727 0 species 1778 1 Thiobacimonas profunda 3 genus Jannaschia 862 2 0 1 188905 no rank 859 1 2645469 0 290400 0 species 1 859 Jannaschia sp. CCS1 0 1284657 genus 475 1 1284658 0 species 475 1 Planktomarina temperata 90 genus Labrenzia 4442 4 0 1 478070 0 2648686 no rank 2 2737 0 1674922 species Labrenzia sp. CP4 1 1513 species Labrenzia sp. VG12 1 1224 0 2021862 187304 0 species 1 1615 Labrenzia aggregata 1 159345 0 1182 2 Roseibacterium genus 6 0 159346 Roseibacterium elongatum 1 1176 species 1 119541 0 genus 1 690 2 Rhodobaca 441209 0 species 1 689 Rhodobaca barguzinensis 1 285107 0 1006 2 Thioclava genus 2 1915078 0 1004 1 Thioclava nitratireducens species Paracoccus 13625 9 181 genus 0 265 1 0 34004 species Paracoccus aminovorans 1 1785 2065379 0 1407 1 Paracoccus sp. CBA4604 species 1945662 0 species 1 1578 Paracoccus contaminans 266 0 2391 1 Paracoccus denitrificans species 1 1174 Paracoccus aminophilus species 34003 0 246570 0 1 1058 no rank 1529068 0 1 1058 Paracoccus sp. BM15 species 2378 1 Paracoccus yeei species 147645 0 1077935 0 1 1673 Paracoccus zhejiangensis species 1 302485 0 genus 80 5 7899 Phaeobacter 0 221822 species Phaeobacter inhibens 2645 1 60890 0 2353 1 Phaeobacter gallaeciensis species species Phaeobacter porticola 828 1 0 1844006 species Phaeobacter piscinae 1993 1 0 1580596 1 60136 0 3011 3 Sulfitobacter genus 23 196795 0 no rank 1 1636 species Sulfitobacter sp. AM1-D1 1636 1 0 1917485 1402135 0 1352 1 Sulfitobacter pseudonitzschiae species Rhodobacter 5 8245 121 genus 0 1 1060 1061 0 1503 1 Rhodobacter capsulatus species 196779 0 2 2609 no rank 2033869 0 species 1495 1 Rhodobacter sp. CZR27 species Rhodobacter sp. LPB0142 1 1114 0 1850250 species 1 4012 Rhodobacter sphaeroides 1063 0 genus 3 3 1655 Roseobacter 2433 1 0 species Roseobacter denitrificans 1 808 0 2434 species Roseobacter litoralis 1 844 0 42443 1 299261 0 1090 2 Tateyamaria genus 3 299262 0 species 1 1087 Tateyamaria omphalii 0 1 53945 Octadecabacter 1552 4 3 genus 1217908 0 481 1 Octadecabacter antarcticus species 386 1 Octadecabacter temperatus species 1458307 0 0 53946 Octadecabacter arcticus 1 682 species genus 1163 1 1649279 0 379347 0 1163 1 Ruegeria mobilis species Rhodovulum 4678 4 55 genus 0 1 34008 35806 0 species 2200 1 Rhodovulum sulfidophilum 2423 2 no rank 2631432 0 308754 0 species 1147 1 Rhodovulum sp. MB263 0 1564506 Rhodovulum sp. P5 1 1276 species 1 309512 0 genus 4 1462 2 Dinoroseobacter 0 215813 Dinoroseobacter shibae 1 1458 species genus 19 2 2646 Sagittula 1 58842 0 0 2624628 no rank 1 2627 2009329 0 species 2627 1 Sagittula sp. P11 58840 0 1826 2 no rank 0 2033435 Rhodobacteraceae bacterium QY30 1071 1 species 0 1904441 species Rhodobacteraceae bacterium 1 755 Thalassococcus 11 1 genus 0 436357 0 2211641 1 1364 genus 245188 0 species 1364 1 Loktanella vestfoldensis 0 1 1579315 6 genus Halocynthiibacter 2 425 0 1579316 Halocynthiibacter arcticus 1 419 species 0 1 97050 Ruegeria 2832 3 11 genus 89184 0 1 1830 Ruegeria pomeroyi species 2625375 0 no rank 991 1 species 1 991 Ruegeria sp. TM1040 292414 0 0 1097466 1 7 genus Defluviimonas 2 1935 1 1928 Defluviimonas alba species 1335048 0 1722 2 Leisingera genus 20 1 191028 0 0 133924 species Leisingera methylohalidivorans 1702 1 Loktanella 1 1 genus 0 245186 5 genus Roseovarius 2 1188 0 1 74030 215743 0 1183 1 Roseovarius mucosus species genus 25 2876 2 Pannonibacter 227873 1 0 121719 0 species 2851 1 Pannonibacter phragmitetus 1317 2 Confluentimicrobium genus 29 1 1609958 0 1288 1 no rank 2643318 0 0 1609966 Confluentimicrobium sp. EMB200-NS6 1 1288 species 20 genus Pelagibaca 2 1966 0 1 360528 species Pelagibaca abyssi 1946 1 0 1250539 74032 1 0 genus 2 2 1200 Antarctobacter 1198 1 Antarctobacter heliothermus species 74033 0 genus 21 2327 3 Ketogulonicigenium 92944 1 0 0 92947 species Ketogulonicigenium robustum 1 1208 1 1098 Ketogulonicigenium vulgare species 92945 0 21 genus Celeribacter 5 4690 0 875170 1 Celeribacter ethanolicus 1 1172 species 0 1758178 1 1296 Celeribacter manganoxidans species 1411902 0 species Celeribacter marinus 636 1 0 1397108 1565 1 Celeribacter indicus species 1208324 0 1191478 1 0 3 947 Magnetococcales order 10 1191479 1 0 2 937 Magnetococcaceae family 4 0 162171 933 1 genus Magnetococcus marinus 1 933 species 0 1124597 1921002 0 order 597 6 Candidatus Paracaedibacteraceae 180 3 1 family 0 1 1777752 Candidatus Paracaedibacter 2 179 1 genus 0 1521255 1 species 1 178 Candidatus Paracaedibacter acanthamoebae 91604 0 2 180 Caedimonadaceae family 3 2100208 1 0 genus 177 1 1509243 0 Candidatus Nucleicultrix amoebiphila 1 177 species 0 1509244 237 1 family 0 44746 0 204454 1 237 no rank 0 86106 species endosymbiont of Acanthamoeba sp. UWC8 1 237 0 204457 1 Sphingomonadales 75467 82 626 order Sphingomonadaceae 58749 59 812 family 0 1 41297 1 13687 0 genus 414 15 18116 Sphingomonas 7074 6 no rank 0 196159 species 1 1210 Sphingomonas sp. KC8 1030157 0 745310 0 species 1 1334 Sphingomonas sp. MM-1 1327635 0 species 865 1 Sphingomonas sp. Cra20 Sphingomonas sp. NIC1 1 1422 species 0 1961362 1390395 0 species 1 1228 Sphingomonas sp. LK11 1938607 0 1 1015 Sphingomonas sp. LM7 species 1560345 0 1339 1 Sphingomonas panacis species 93064 0 1 955 Sphingomonas koreensis species 1633 1 Sphingomonas taxi species 1549858 0 0 152682 Sphingomonas melonis 1 1354 species 1480 1 Sphingomonas sanxanigenens species 397260 0 1 160791 0 species 1443 2829 2 Sphingomonas wittichii 0 1283312 strain Sphingomonas sp. DC-6 1 1386 0 1609977 species Sphingomonas hengshuiensis 1 1038 0 165695 1 Sphingobium 15 17032 353 genus 0 2611147 no rank 6 6938 Sphingobium sp. YBL2 1 1550 species 0 484429 407020 0 species 816 1 Sphingobium sp. MI1205 0 627192 species Sphingobium sp. SYK-6 1 1203 0 1315974 species Sphingobium sp. TKS 1 1350 1855519 0 species 889 1 Sphingobium sp. EP60837 species 1130 1 Sphingobium sp. RAC03 1843368 0 46429 0 1 1406 Sphingobium chlorophenolicum species species 1 1106 Sphingobium baderi 1332080 0 species 943 1 Sphingobium herbicidovorans 76947 0 0 13690 Sphingobium yanoikuyae 1 1447 species 0 1673076 species Sphingobium hydrophobicum 1311 1 0 120107 species Sphingobium cloacae 1 1221 0 332056 species Sphingobium japonicum 1058 1 species Sphingobium indicum 1 1249 0 332055 1 613 genus 0 2709685 species 613 1 Sphingorhabdus flavimaris 266812 0 1 1649486 0 2 1229 Rhizorhabdus genus 12 0 1850238 species Rhizorhabdus dicambivorans 1217 1 genus 23 1935 3 Sphingorhabdus 1 1434046 0 2 1912 no rank 0 2614947 0 2077182 species Sphingorhabdus sp. YGSMI21 679 1 species 1233 1 Sphingorhabdus sp. M41 1806885 0 43 genus Citromicrobium 1021 2 0 72173 1 978 1 no rank 2630544 0 0 1634516 Citromicrobium sp. JL477 1 978 species genus 24 1406 2 Zymomonas 541 1 0 species Zymomonas mobilis 1 1382 0 542 82 genus Novosphingobium 5 5593 0 1 165696 species 1 1193 Novosphingobium aromaticivorans 48935 0 158500 0 1342 1 Novosphingobium resinovorum species 2644732 0 1455 1 no rank 702113 0 1455 1 Novosphingobium sp. PP1Y species 0 205844 species Novosphingobium pentaromativorans 1521 1 0 2685927 1 1311 genus 1921510 0 species 1 1311 Sphingomonas sp. JJ-A5 1 165697 0 8678 10 Sphingopyxis genus 255 3245 4 no rank 2614943 0 species 268 1 Sphingopyxis sp. LPB0140 1913578 0 292913 0 776 1 Sphingopyxis sp. 113P3 species 1866325 0 1 990 Sphingopyxis sp. MG species species Sphingopyxis sp. QXT-31 1 1211 0 1357916 0 117207 species Sphingopyxis alaskensis 1 674 species 988 1 Sphingopyxis granuli 267128 0 1515612 0 1 825 Sphingopyxis fribergensis species 854 1 Sphingopyxis terrae species 33052 0 33050 0 1837 1 Sphingopyxis macrogoltabida species 0 1 150203 Blastomonas 2 1003 3 genus no rank 1000 1 2626550 0 1 1000 Blastomonas sp. RAC04 species 1842535 0 22 16092 Erythrobacteraceae family 328 335929 1 0 0 2800681 2 1257 genus 1648404 0 species 1 481 Erythrobacter atlanticus species 776 1 Erythrobacter gangjinensis 502682 0 1435 2 genus 0 2800686 692370 0 species 723 1 Altererythrobacter dongtanensis 1982042 0 species 712 1 Altererythrobacter mangrovi 2800685 0 genus 703 1 543877 0 1 703 Altererythrobacter marensis species 1 1084 genus 2800682 0 Altererythrobacter namhicola 1084 1 species 0 645517 6 4581 no rank 0 2800788 1 1041 0 3 2630 Erythrobacter genus 139 species 1616 1 Erythrobacter litoralis 39960 0 Porphyrobacter neustonensis 875 1 species 0 1112 0 1 1111 Porphyrobacter 1951 3 75 genus 2683265 0 2 1876 no rank species Porphyrobacter HT-58-2 1 907 0 2023229 1896196 0 969 1 Porphyrobacter sp. LM 6 species 0 1855416 1550 2 genus 266951 0 847 1 Erythrobacter seohaensis species 192812 0 species 703 1 Erythrobacter flavus 1 1295327 0 genus 59 3 2408 Croceicoccus 0 450378 Croceicoccus marinus 1394 1 species 1348774 0 species 955 1 Croceicoccus naphthovorans Altererythrobacter 4 2746 108 genus 0 1 361177 1267766 0 species 1230 1 Altererythrobacter atlanticus 1 515 Altererythrobacter ishigakiensis species 476157 0 species 1 893 Altererythrobacter epoxidivorans 361183 0 2215 order Rhizobiales 211 218535 0 356 1 1 41294 0 26 41277 Bradyrhizobiaceae family 570 Bosea 5 6993 139 genus 0 1 85413 2653178 0 5233 3 no rank 0 1792307 species Bosea sp. PAMC 26642 1640 1 0 2015316 Bosea sp. AS-1 1 1773 species species 1 1820 Bosea sp. RAC05 1842539 0 1526658 0 1 1621 Bosea vaviloviae species 141 genus Rhodopseudomonas 2 9006 0 1 1073 1076 0 species 1 8865 Rhodopseudomonas palustris Nitrobacter 3 1640 22 genus 0 1 911 912 0 species 1 958 Nitrobacter hamburgensis Nitrobacter winogradskyi 660 1 species 0 913 genus 36 2 859 Oligotropha 1 40136 0 823 1 Oligotropha carboxidovorans species 40137 0 1 374 0 11 21341 Bradyrhizobium genus 609 44255 0 species 2034 1 Bradyrhizobium oligotrophicum 0 2631580 6 11309 no rank species Bradyrhizobium sp. BTAi1 2043 1 0 288000 1 1933 Bradyrhizobium sp. SK17 species 2057741 0 0 114615 species Bradyrhizobium sp. ORS 278 2077 1 376 0 1 1941 Bradyrhizobium sp. species 1523 1 Bradyrhizobium sp. CCGE-LA001 species 1223566 0 species 1 1792 Bradyrhizobium sp. ORS 285 115808 0 1355477 0 species 3046 1 Bradyrhizobium diazoefficiens 375 0 species 2990 1 Bradyrhizobium japonicum 1353 1 Bradyrhizobium icense species 1274631 0 Variibacter 2 868 19 genus 0 1649510 1 0 1333996 Variibacter gotjawalensis 849 1 species 0 119042 3865 6 no rank 1 1484898 0 genus 18 1013 2 Methyloceanibacter species 1 995 Methyloceanibacter caenitepidi 1384459 0 1572860 1 0 genus 7 1716 2 Hartmannibacter 0 1482074 Hartmannibacter diazotrophicus 1709 1 species Pseudorhodoplanes 2 1136 51 genus 0 1 1734920 Pseudorhodoplanes sinuspersici 1085 1 species 0 1235591 Rhodobiaceae 871 3 3 family 0 1 119043 0 1 256616 Parvibaculum 2 868 28 genus Parvibaculum lavamentivorans 840 1 species 0 256618 family 221 22033 20 Phyllobacteriaceae 1 69277 0 68287 1 0 9 15350 Mesorhizobium genus 432 Mesorhizobium japonicum 1 1824 species 0 2066070 1 1564 Mesorhizobium australicum species 536018 0 species Mesorhizobium ciceri 1 2206 0 39645 no rank 1754 1 325217 0 278153 0 species 1754 1 Mesorhizobium sp. WSM1497 species Mesorhizobium amorphae 2042 1 0 71433 Mesorhizobium opportunistum 2055 1 species 0 593909 0 381 Mesorhizobium loti 2093 1 species species Mesorhizobium sp. B7 1 1380 0 1670800 Hoeflea 1104 2 10 genus 0 1 274591 no rank 1 1094 0 2614931 species Hoeflea sp. IMCC20628 1 1094 0 1620421 1 245876 0 873 2 Nitratireductor genus 31 472175 0 species 842 1 Nitratireductor basaltis 26 genus Chelativorans 2 1150 0 449972 1 no rank 1124 1 2643807 0 species Chelativorans sp. BNC1 1 1124 0 266779 0 1 28100 Phyllobacterium 1100 2 10 genus species 1090 1 Phyllobacterium zundukense 1867719 0 0 31988 1 9 genus Aminobacter 2 2235 0 83263 Aminobacter aminovorans 2226 1 species family 40 7706 20 Brucellaceae 1 118882 0 Brucella 14 3577 1710 genus 0 1 234 species 1 35 Brucella microti 444163 0 0 120577 species Brucella ceti 1 132 species 1 52 Brucella ovis 236 0 species Brucella abortus 115 1 0 235 no rank 903 4 2632610 0 1885919 0 1 293 Brucella sp. 141012304 species species Brucella sp. 09RB8910 1 289 0 1844051 0 1149952 Brucella sp. 09RB8471 1 262 species 59 1 Brucella sp. 2002734562 species 1891098 0 44 1 Brucella melitensis species 29459 0 Brucella suis 1 67 species 0 29461 0 36855 species Brucella canis 136 1 0 120576 species Brucella pinnipedialis 146 1 species Brucella vulpis 237 1 0 981386 528 1 0 genus 49 5 4089 Ochrobactrum 0 271865 Ochrobactrum sp. A44 1 943 species species Ochrobactrum pituitosum 1 1018 0 571256 529 0 1 1085 Ochrobactrum anthropi species species Ochrobactrum pseudogrignonense 994 1 0 419475 45404 1 0 family 1 5 1429 Beijerinckiaceae 0 1 532 Beijerinckia 2 470 18 genus species 1 452 Beijerinckia indica 533 0 1 120652 0 genus 12 958 2 Methylocella species Methylocella silvestris 1 946 0 199596 1 45401 0 family 168 14995 19 Hyphomicrobiaceae 0 1082930 1 Pelagibacterium 1017 2 18 genus species 1 999 Pelagibacterium halotolerans 531813 0 1 29407 0 genus 64 1799 2 Rhodoplanes no rank 1735 1 2619116 0 1 1735 Rhodoplanes sp. Z2-YC6860 species 674703 0 59282 1 0 1569 2 Blastochloris genus 45 1079 0 species 1524 1 Blastochloris viridis 1 119044 0 2 385 Filomicrobium genus 2 0 1608628 Candidatus Filomicrobium marinum 1 383 species 46913 1 0 genus 94 4474 4 Devosia 0 196773 3 4380 no rank species Devosia sp. I507 995 1 0 2083786 Devosia sp. H5989 1 1527 species 0 1643450 0 1736675 Devosia sp. A16 1 1858 species 4628 4 Hyphomicrobium genus 57 1 81 0 0 2619925 no rank 1464 1 species Hyphomicrobium sp. MC1 1 1464 0 717785 0 1427356 Hyphomicrobium nitrativorans 1868 1 species species Hyphomicrobium denitrificans 1239 1 0 53399 955 2 Rhodomicrobium genus 13 1 1068 0 942 1 Rhodomicrobium vannielii species 1069 0 1 119045 0 26031 15 Methylobacteriaceae family 149 1 407 0 genus 666 14996 9 Methylobacterium 270351 0 species 2450 1 Methylobacterium aquaticum 1 2055 Methylobacterium radiotolerans species 31998 0 no rank 5309 3 2615210 0 1754 1 Methylobacterium sp. AMS5 species 925818 0 species 1 1812 Methylobacterium sp. 4-46 426117 0 Methylobacterium sp. C1 1743 1 species 0 1479019 0 334852 Methylobacterium oryzae 1429 1 species 0 114616 species Methylobacterium nodulans 1 1602 Methylobacterium phyllosphaerae 1485 1 species 0 418223 2282523 0 genus 9050 3 0 408 species Methylobacterium extorquens 4724 1 2965 1 Methylobacterium populi species 223967 0 0 29429 Methylobacterium zatmanii 1 1361 species 0 1 186650 Microvirga 1836 2 31 genus 0 1882682 species Microvirga ossetica 1 1805 0 82115 1 Rhizobiaceae 54 74173 773 family 0 323620 1 Shinella 2769 2 20 genus 0 2643062 2749 1 no rank 0 879274 Shinella sp. HZN7 2749 1 species 227292 0 16028 10 no rank 0 1 106591 Ensifer 3 2961 29 genus 0 716925 Ensifer sojae 1391 1 species Ensifer adhaerens 1541 1 species 0 106592 Sinorhizobium 7 13067 199 genus 0 28105 1 species Sinorhizobium meliloti 1 3211 0 382 0 110321 Sinorhizobium medicae 1028 1 species Sinorhizobium americanum 1996 1 species 0 194963 no rank 3131 2 0 2613772 1781 1 Sinorhizobium sp. RAC02 species 1842534 0 species Sinorhizobium sp. CCBAU 05631 1 1350 0 794846 0 663276 species group 1 3502 species 3502 1 Sinorhizobium fredii 380 0 0 1 34019 9 genus Liberibacter 625 6 Candidatus Liberibacter asiaticus 1 87 species 0 34021 0 309868 Candidatus Liberibacter americanus 1 138 species 556287 0 93 1 Candidatus Liberibacter solanacearum species Candidatus Liberibacter africanus 1 132 species 0 34020 1273132 0 species 1 166 Liberibacter crescens 227290 0 35 53978 no rank 0 357 1 236 genus Agrobacterium 14250 7 species 1642 1 Agrobacterium vitis 373 0 2 7514 species group 1183400 0 species 1 5648 Agrobacterium tumefaciens 358 0 species Agrobacterium fabrum 1 1866 0 1176649 1913 1 Agrobacterium rhizogenes species 359 0 0 2632611 2 2945 no rank 1317 1 Agrobacterium sp. RAC06 species 1842536 0 1 1628 Agrobacterium sp. H13-3 species 861208 0 genus 1 2941 1525371 0 2941 1 Neorhizobium galegae species 399 0 Rhizobium 27 36787 2446 genus 0 1 379 1 2735 Rhizobium phaseoli species 396 0 species Rhizobium etli 4199 1 0 29449 0 2613769 15198 21 no rank 0 2020312 species Rhizobium sp. CIAT894 1498 1 1 1 Rhizobium sp. N621 species 1703964 0 1703968 0 1 3 Rhizobium sp. N871 species 0 1301032 species Rhizobium sp. IE4771 987 1 0 2020313 species Rhizobium sp. TAL182 309 1 1703962 0 1 8 Rhizobium sp. N1341 species Rhizobium sp. N113 5 1 species 0 1703960 1703969 0 1373 1 Rhizobium sp. N324 species 424182 0 1017 1 Rhizobium sp. IRBG74 species species Rhizobium sp. Y9 1098 1 0 1914541 254 1 Rhizobium sp. N731 species 1703966 0 0 1703961 species Rhizobium sp. N1314 1 254 1039 1 Rhizobium sp. Kim5 species 2020311 0 Rhizobium sp. N6212 1 1 species 0 1703965 species Rhizobium sp. NXC14 876 1 0 1981173 2028343 0 1359 1 Rhizobium sp. 10195 species species 1 1193 Rhizobium sp. S41 1869170 0 species 7 1 Rhizobium sp. N741 1703967 0 Rhizobium sp. NT-26 1092 1 species 0 1125847 1 1559 Rhizobium sp. ACO-34A species 1571470 0 0 2048897 species Rhizobium sp. NXC24 1 1265 56730 0 species 1981 1 Rhizobium gallicum species 8642 1 Rhizobium leguminosarum 384 0 398 0 1586 1 Rhizobium tropici species 24 family Chelatococcaceae 3693 4 0 2036754 1 1 28209 0 genus 105 3669 3 Chelatococcus 0 2638111 2060 1 no rank species Chelatococcus sp. CO-6 2060 1 0 1702325 0 444444 Chelatococcus daeguensis 1504 1 species Aurantimonadaceae 6545 7 67 family 0 1 255475 5155 4 Martelella genus 110 293088 1 0 0 293089 Martelella mediterranea 1828 1 species 1 1618 Martelella endophytica species 1486262 0 2629616 0 1599 1 no rank species Martelella sp. AD-3 1599 1 0 686597 27 genus Aureimonas 1323 2 0 414371 1 2615206 0 no rank 1 1296 Aureimonas sp. AU20 1 1296 species 0 1349819 family 90 7 7097 Xanthobacteraceae 335928 1 0 genus 42 2811 2 Azorhizobium 1 6 0 species 2769 1 Azorhizobium caulinodans 7 0 0 279 1 58 genus Xanthobacter 2 2153 0 280 species Xanthobacter autotrophicus 1 2095 1 152053 0 genus 50 2 2043 Starkeya species Starkeya novella 1 1993 0 921 3422 18 Bartonellaceae family 7 1 772 0 Bartonella 17 3415 54 genus 0 1 773 species 111 1 Bartonella ancashensis 1318743 0 182 1 Bartonella tribocorum species 85701 0 803 0 species 1 114 Bartonella quintana 0 56426 species Bartonella clarridgeiae 185 1 Bartonella australis 1 123 species 0 388640 0 1686310 Bartonella apis 1028 1 species 38323 0 1 160 Bartonella henselae species 33047 0 1 128 Bartonella vinsonii species species 175 1 Bartonella grahamii 33045 0 species Bartonella bacilliformis 1 158 0 774 no rank 997 6 0 2645622 0 1933904 species Bartonella sp. WD16.2 1 193 1933910 0 1 130 Bartonella sp. A1379B species 515256 0 species 1 134 Bartonella sp. 1-1C 1 142 Bartonella sp. Raccoon60 species 1933912 0 Bartonella sp. JB15 199 1 species 0 1933906 species 199 1 Bartonella sp. JB63 1933907 0 31993 1 0 3183 6 Methylocystaceae family 25 Methylocystis 1784 3 47 genus 0 1 133 0 2625913 877 1 no rank 187303 0 877 1 Methylocystis sp. SC2 species 860 1 Methylocystis bryophila species 655015 0 genus 39 2 1374 Methylosinus 1 425 0 1 1335 Methylosinus trichosporium species 426 0 54526 0 6 974 order 2045213 0 genus 194 1 1925548 0 194 1 Candidatus Fonsibacter ubiquis species 1 1655514 0 family 1 780 5 Pelagibacteraceae 0 198251 356 2 genus no rank 1 177 0 2647897 0 1002672 Candidatus Pelagibacter sp. IMCC9063 1 177 species 0 198252 Candidatus Pelagibacter ubique 179 1 species 0 1655516 no rank 423 2 744985 0 1 160 alpha proteobacterium HIMB59 species 859653 0 263 1 alpha proteobacterium HIMB5 species 0 2800059 971 2 order 0 2800061 971 2 family 0 74317 1 11 genus Maricaulis 971 2 species 1 960 Maricaulis maris 74318 0 2800060 0 order 5 1941 32 family Hyphomonadaceae 1941 5 0 69657 1 2723 0 genus 354 1 0 2724 Hirschia baltica 354 1 species Hyphomonas 3 1555 16 genus 0 1 85 0 81032 species Hyphomonas neptunium 1 965 0 2630699 574 1 no rank Hyphomonas sp. Mor2 574 1 species 0 1906738 4778 8 no rank 0 82117 1414 2 Polymorphum genus 17 1 991903 0 species Polymorphum gilvum 1397 1 0 991904 1956 2 Phreatobacter genus 43 1 1632780 0 1913 1 Phreatobacter sp. S-12 species 1868589 0 clade 2 494 62654 0 1 767891 0 genus 1 2 494 Candidatus Puniceispirillum 0 767892 species Candidatus Puniceispirillum marinum 1 493 Micavibrio 914 2 28 genus 0 1 213485 349221 0 species 1 886 Micavibrio aeruginosavorus 22 order Rickettsiales 52 4829 0 766 1 1 220 no rank 0 1699067 species Rickettsiales bacterium Ac37b 1 220 0 1528098 0 1 1328881 Candidatus Midichloriaceae 2 80 5 family 1 75 genus 411566 0 0 234827 Candidatus Midichloria mitochondrii 75 1 species 2 family Rickettsiaceae 2658 26 0 1 775 0 2115980 1 194 genus Candidatus Phycorickettsia trachydisci 1 194 species 0 2115978 24 2462 tribe 33988 0 genus 134 1 0 69474 species Orientia tsutsugamushi 1 134 0 784 Rickettsia 23 2328 315 genus 0 1 780 species group 2 393 0 1129742 0 33990 Rickettsia bellii 305 1 species 0 788 Rickettsia canadensis 88 1 species no rank 1 158 0 114295 337479 0 species 1 158 Rickettsia endosymbiont of Bemisia tabaci 2 268 species group 114292 0 782 0 species 1 139 Rickettsia prowazekii Rickettsia typhi 1 129 species 0 785 114277 0 1194 17 species group 1 24 Rickettsia slovaca species 35794 0 0 47589 species Rickettsia peacockii 59 1 0 226665 species Rickettsia heilongjiangensis 38 1 42862 0 species 1 236 Rickettsia felis species Rickettsia japonica 19 1 0 35790 1 56 Rickettsia rickettsii species 783 0 787 0 1 174 Rickettsia australis species 0 786 Rickettsia akari 110 1 species 0 35792 Rickettsia parkeri 1 45 species species Rickettsia philipii 33 1 0 1105106 109232 0 species 1 94 Rickettsia monacensis 0 35788 Rickettsia africae 1 46 species 35791 0 31 1 Rickettsia massiliae species 0 781 Rickettsia conorii 82 1 species species Rickettsia montanensis 67 1 0 33991 Rickettsia rhipicephali 1 26 species 0 33992 33989 0 54 1 Rickettsia amblyommatis species 1849 22 Anaplasmataceae family 8 1 942 0 0 33993 1 Neorickettsia 4 251 3 genus 0 33994 Neorickettsia helminthoeca 127 1 species 0 950 Neorickettsia risticii 71 1 species 951 0 50 1 Neorickettsia sennetsu species 8 732 tribe 952 0 0 1 953 Wolbachia 732 8 17 genus 2640676 0 715 7 no rank species 100 1 Wolbachia endosymbiont of Cimex lectularius 246273 0 0 163164 species Wolbachia endosymbiont of Drosophila melanogaster 1 84 0 80849 species Wolbachia endosymbiont of Brugia malayi 1 82 77551 0 species 54 1 Wolbachia endosymbiont of Onchocerca volvulus 0 100901 species Wolbachia endosymbiont of Onchocerca ochengi 53 1 250 1 Wolbachia endosymbiont of Drosophila simulans species 77038 0 species 92 1 Wolbachia sp. wRi 66084 0 0 1 943 Ehrlichia 6 627 5 genus no rank 1 97 106181 0 species Ehrlichia sp. HF 1 97 0 391036 525 4 species group 0 106178 35795 0 128 1 Ehrlichia muris species 945 0 species 82 1 Ehrlichia chaffeensis 106 1 Ehrlichia canis species 944 0 779 0 209 1 Ehrlichia ruminantium species 768 0 genus 3 231 Anaplasma centrale 1 35 species 0 769 770 0 species 1 116 Anaplasma marginale 1 80 species group 0 106179 species 80 1 Anaplasma phagocytophilum 948 0 order 142 20 23547 Caulobacterales 1 204458 0 0 1 76892 405 family Caulobacteraceae 19 23405 2 1765 Phenylobacterium genus 38 1 20 0 Phenylobacterium zucineum 1727 1 species 0 284016 81440 0 no rank 1 439 1759059 0 species 1 439 Caulobacteraceae bacterium OTSz_A_272 0 75 1 224 genus Caulobacter 6 11546 88688 0 1797 1 Caulobacter segnis species 3760 1 Caulobacter vibrioides species 155892 0 no rank 1 2428 0 2648921 species 1 2428 Caulobacter sp. K31 366602 0 species Caulobacter mirabilis 1810 1 0 69666 69395 0 1 1527 Caulobacter henricii species 21 genus Asticcacaulis 2 1177 0 1 76890 0 78587 Asticcacaulis excentricus 1156 1 species 1 41275 0 7 8073 Brevundimonas genus 174 74313 0 species 1538 1 Brevundimonas subvibrioides no rank 3 3948 2622653 0 1126 1 Brevundimonas sp. GW460-12-10-14-LB2 species 1827469 0 1105 1 Brevundimonas sp. DS20 species 1532555 0 species Brevundimonas sp. LM2 1 1717 0 1938605 0 588932 species Brevundimonas naejangsanensis 1391 1 species Brevundimonas vesicularis 1 1022 0 41276 3 378 phylum 0 2138240 2138243 0 class 3 378 order 378 3 0 2138246 2138247 1 0 3 378 Coprothermobacteraceae family 1 2 genus Coprothermobacter 2 377 0 68335 1 Coprothermobacter proteolyticus 375 1 species 0 35786 0 74152 phylum 1408 11 class 1 6 796 Endomicrobia 1 447830 0 1783344 1 0 order 1 795 5 Endomicrobiales 794 4 Endomicrobiaceae family 3 1783343 1 0 1408194 1 0 genus 1 3 791 Endomicrobium 1408204 0 293 1 Candidatus Endomicrobium trichonymphae species 497 1 Endomicrobium proavitum species 1408281 0 317 4 Elusimicrobia class 1 1 641853 0 1 order Elusimicrobiales 3 316 0 641854 1 641876 0 family 2 315 1 423604 0 2 315 Elusimicrobium genus 1 423605 0 1 314 Elusimicrobium minutum species 0 99260 no rank 1 295 0 167965 species uncultured Termite group 1 bacterium 1 295 clade 48914 94 0 1783257 phylum 7 19159 28 Verrucomicrobia 1 74201 0 310 5 Methylacidiphilae class 5 1 1955630 0 4 305 Methylacidiphilales order 5 717963 1 0 family 3 300 0 717964 1 genus Methylacidiphilum 300 3 0 1 511745 1 141 Methylacidiphilum fumariolicum species 591154 0 0 511746 species Methylacidiphilum infernorum 1 158 class 9 9141 6 Verrucomicrobiae 1 203494 0 order 27 5 9132 Verrucomicrobiales 1 48461 0 0 1 1647988 47 family Akkermansiaceae 9105 4 0 1 239934 23 genus Akkermansia 3 9058 species 7190 1 Akkermansia muciniphila 239935 0 Akkermansia glycaniphila 1 1845 species 0 1679444 class 2 102 134549 0 1 134550 0 2 102 Candidatus Xiphinematobacter genus 2 2648876 0 no rank 1 100 1704307 0 1 100 Candidatus Xiphinematobacter sp. Idaho Grape species 417295 0 no rank 2 2516 species Verrucomicrobia bacterium IMCC26134 1 1282 0 1637999 2026799 0 species 1234 1 Verrucomicrobia bacterium 1 414999 0 class 97 7083 12 Opitutae 6345 7 Opitutales order 124 415000 1 0 0 1 134623 73 family Opitutaceae 6221 6 Lacunisphaera 2068 2 93 genus 0 1961799 1 species Lacunisphaera limnophila 1 1975 0 1838286 1 178440 0 1556 2 Opitutus genus 13 species Opitutus terrae 1 1543 0 107709 278955 0 no rank 2524 1 794903 0 1 2524 Opitutaceae bacterium TAV5 species order 6 641 4 Puniceicoccales 415001 1 0 family 5 3 635 Puniceicoccaceae 415002 1 0 5 genus Coraliomargarita 630 2 0 1 442430 0 395922 Coraliomargarita akajimensis 1 625 species 5 phylum Planctomycetes 37 17198 0 203682 1 0 666505 1 Phycisphaerae 2994 7 14 class 666506 1 0 4 1559 Phycisphaerales order 40 0 666507 1 Phycisphaeraceae 3 1519 9 family 0 1 666508 16 genus Phycisphaera 1510 2 1 1494 Phycisphaera mikurensis species 547188 0 order 1421 2 0 2483366 0 2483367 family 2 1421 0 2483368 2 1421 genus 1941349 0 species 1 677 Phycisphaerae bacterium ST-PulAB-D4 Phycisphaerae bacterium L21-RPul-D3 1 744 species 0 1940790 3 494 class 2517206 0 0 1 1127829 10 order Candidatus Brocadiales 494 3 family 1 2 484 Candidatus Brocadiaceae 1 1127830 0 genus 1 483 0 380738 174633 0 483 1 Candidatus Kuenenia stuttgartiensis species 0 203683 1 58 class Planctomycetia 13705 26 2691355 0 order 852 3 family 7 852 3 Gemmataceae 1914233 1 0 5 genus Gemmata 2 845 0 1 113 840 1 no rank 2622970 0 1630693 0 840 1 Gemmata sp. SH-PL17 species 0 1 112 190 order Planctomycetales 10 7512 1 126 0 7322 9 Planctomycetaceae family 26 Fuerstia 2 905 17 genus 0 1936111 1 species Fuerstia marisgermanicae 888 1 0 1891926 118 1 0 genus 61 4507 3 Planctomyces 4446 2 no rank 0 2648843 species 3080 1 Planctomyces sp. SH-PL62 1636152 0 Planctomyces sp. SH-PL14 1366 1 species 0 1632864 1 1135 genus 1649480 0 Planctopirus limnophila 1135 1 species 0 120 Rubinisphaera 749 2 15 genus 0 1 1649490 species Rubinisphaera brasiliensis 1 734 0 119 order 3939 7 2691356 0 family 36 3939 7 Isosphaeraceae 1 1763524 0 13 genus Paludisphaera 2 2235 0 1 1763521 1387353 0 2222 1 Paludisphaera borealis species genus 1 939 2 Singulisphaera 1 466152 0 0 466153 Singulisphaera acidiphila 1 938 species 1 127 0 genus 8 2 729 Isosphaera 1 721 Isosphaera pallida species 128 0 0 2691354 order 1344 5 2691358 0 family 2 403 Thermogutta 403 2 1 genus 0 1676125 1 1331910 0 402 1 Thermogutta terrifontis species 2691357 0 941 3 family 1 567 genus 0 265488 265606 0 species 567 1 Rhodopirellula baltica 123 1 0 374 2 Pirellula genus 20 Pirellula staleyi 354 1 species 0 125 phylum 3 8992 256845 0 0 1313211 1 44 class Lentisphaeria 8992 3 717 order Victivallales 8948 2 0 1 278082 0 1674876 8231 1 no rank 0 2094242 Victivallales bacterium CCUG 44730 8231 1 species 0 204428 22 2033 phylum 1 204429 0 class 5 22 2033 Chlamydiia 2 order Parachlamydiales 7 677 0 1963360 1 1 92712 0 129 2 Simkaniaceae family 4 1 125 genus 34093 0 83561 0 125 1 Simkania negevensis species 0 1 92713 Parachlamydiaceae 3 308 1 family 0 282132 genus 155 1 0 389348 Candidatus Protochlamydia naegleriophila 155 1 species 1 152 genus 0 83551 0 83552 Parachlamydia acanthamoebae 1 152 species 0 92714 family 1 238 238 1 genus 0 71666 species Waddlia chondrophila 1 238 0 71667 order 3 1351 14 Chlamydiales 1 51291 0 family 5 1348 13 Chlamydiaceae 809 1 0 0 1113537 12 1343 no rank 12 1343 Chlamydia genus 59 1 810 0 0 83554 Chlamydia psittaci 1 120 species species Chlamydia abortus 1 110 0 83555 species 93 1 Chlamydia caviae 83557 0 0 83556 species Chlamydia felis 149 1 71 1 Chlamydia pecorum species 85991 0 0 83558 Chlamydia pneumoniae 101 1 species species 1 95 Chlamydia avium 1457141 0 species 1 119 Chlamydia gallinacea 1457153 0 813 0 species 1 138 Chlamydia trachomatis species Chlamydia suis 181 1 0 83559 species Chlamydia muridarum 107 1 0 83560 1532 4 phylum 134625 0 class 7 4 1532 Kiritimatiellae 1 1921781 0 3 1525 Kiritimatiellales order 7 1921782 1 0 family 1518 2 1921783 0 1921784 1 0 genus 40 1518 2 Kiritimatiella Kiritimatiella glycovorans 1 1478 species 0 1307763 phylum 1244 10 0 200940 0 67799 1 Thermodesulfobacteria 10 1244 1 class 188710 1 0 1243 9 Thermodesulfobacteriales order 3 Thermodesulfobacteriaceae 8 1240 6 family 0 188711 1 Thermodesulfatator 446 2 2 genus 0 241192 1 species 1 444 Thermodesulfatator indicus 171695 0 genus 1 2 239 Caldimicrobium 1 444090 0 238 1 Caldimicrobium thiodismutans species 1653476 0 Thermodesulfobacterium 3 549 2 genus 0 1 1740 1 160 Thermodesulfobacterium commune species 1741 0 1295609 0 species 1 387 Thermodesulfobacterium geofontis 10147 44 phylum 0 200918 13 class Thermotogae 10147 44 0 188708 1 0 1643946 1 Kosmotogales 7 980 1 order 1643948 1 0 979 6 Kosmotogaceae family 6 2 genus Kosmotoga 607 3 0 1 651456 651457 0 species 1 256 Kosmotoga olearia 0 1330330 species Kosmotoga pacifica 1 349 2 366 Mesotoga genus 3 1 1184396 0 1184387 0 species 363 1 Mesotoga prima Thermotogales 28 7184 10 order 0 1 2419 1 188709 0 family 25 4274 17 Thermotogaceae 1270 5 Pseudothermotoga genus 95 1 1643951 0 0 38322 Pseudothermotoga elfii 1 265 species 0 177758 species Pseudothermotoga lettingae 1 291 57487 0 species 1 362 Pseudothermotoga hypogea 0 119394 species Pseudothermotoga thermarum 257 1 1 2335 0 genus 90 2979 11 Thermotoga 93929 0 1 220 Thermotoga petrophila species 4 1010 no rank 0 2631113 1157947 0 220 1 Thermotoga sp. Cell2 species 126738 0 1 351 Thermotoga sp. RQ7 species 0 126740 species Thermotoga sp. RQ2 205 1 0 1157948 species Thermotoga sp. 2812B 1 234 Thermotoga neapolitana 1 360 species 0 2337 2336 0 1 252 Thermotoga maritima species 93930 0 285 1 Thermotoga naphthophila species Thermotoga profunda 425 1 species 0 1508420 Thermotoga caldifontis 1 337 species 0 1508419 1 1643950 0 family 26 2900 10 Fervidobacteriaceae 0 1 2420 8 genus Thermosipho 1836 5 no rank 2 828 0 2676525 species Thermosipho sp. 1063 1 413 0 1462747 1437364 0 species 1 415 Thermosipho sp. 1070 505 1 Thermosipho melanesiensis species 46541 0 2421 0 species 1 495 Thermosipho africanus Fervidobacterium 1038 4 6 genus 0 1 2422 2423 0 296 1 Fervidobacterium islandicum species species Fervidobacterium nodosum 287 1 0 2424 Fervidobacterium pennivorans 1 449 species 0 93466 8 1970 Petrotogales order 8 1 1643947 0 1643949 0 7 1962 family 1511648 1 0 334 2 Defluviitoga genus 5 1006576 0 1 329 Defluviitoga tunisiensis species 4 genus Marinitoga 1261 3 0 1 160798 149715 0 species 622 1 Marinitoga piezophila no rank 635 1 0 2640159 species 1 635 Marinitoga sp. 1137 1545835 0 1 28236 0 genus 2 2 367 Petrotoga 0 69499 species Petrotoga mobilis 365 1 20999809 1724 clade 1783272 0 phylum 835 5 67819 0 0 1 1663419 Fimbriimonadia 5 835 1 class 2 order Fimbriimonadales 4 834 0 1 1663425 4 family Fimbriimonadaceae 3 832 0 1663426 1 genus 3 828 2 Fimbriimonas 1005038 1 0 1005039 0 species 825 1 Fimbriimonas ginsengisoli 0 544448 1 2 phylum Tenericutes 26092 101 no rank 697 2 0 2799557 genus 1 697 2 Candidatus Izimaplasma 1 1912503 0 2624196 0 no rank 1 696 1541959 0 species 696 1 Candidatus Izimaplasma sp. HR1 0 713063 no rank 2692 2 1911684 0 1302 1 Tenericutes bacterium MO-XQ species 0 1911683 species Tenericutes bacterium MZ-XQ 1 1390 Mollicutes 96 22701 33 class 0 31969 1 8727 43 Mycoplasmatales order 14 1 2085 0 1 2092 0 family 14 8713 42 Mycoplasmataceae 2129 0 genus 2 402 species 169 1 Ureaplasma parvum 134821 0 0 2130 Ureaplasma urealyticum 233 1 species 5979 27 Mycoplasma genus 87 2093 1 0 0 86660 species Mycoplasma dispar 1 222 Mycoplasma parvum 1 74 species 0 984991 51365 0 species 341 1 Mycoplasma yeatsii 305 1 no rank 0 2683645 species Mycoplasma sp. (ex Biomphalaria glabrata) 305 1 0 1749074 176 1 Mycoplasma mobile species 2118 0 species Mycoplasma gallisepticum 246 1 0 2096 species Mycoplasma canadense 1 161 0 29554 136241 0 1 47 Mycoplasma haemocanis species 2128 0 species 333 1 Mycoplasma flocculare 2098 0 species 393 1 Mycoplasma hominis 57372 0 species 1 114 Mycoplasma suis species Mycoplasma hyorhinis 1 147 0 2100 65123 0 species 1 76 Mycoplasma wenyonii 0 2123 Mycoplasma putrefaciens 191 1 species 0 2111 Mycoplasma arthritidis 1 111 species species Mycoplasma ovis 89 1 0 171632 species 1 70 Mycoplasma pneumoniae 2104 0 1 138 Mycoplasma bovoculi species 45362 0 2099 0 1 174 Mycoplasma hyopneumoniae species 50052 0 species 232 1 Mycoplasma crocodyli species Mycoplasma haemofelis 70 1 0 29501 species Mycoplasma penetrans 1 289 0 28227 0 2097 Mycoplasma genitalium 1 70 species species group 1823 3 656088 0 2102 0 1 864 Mycoplasma mycoides species 1 444 Mycoplasma leachii species 2105 0 0 2095 Mycoplasma capricolum 515 1 species 12 2318 genus 2767358 0 2107 0 1 189 Mycoplasma pulmonis species 2094 0 species 200 1 Mycoplasma arginini species 1 299 Mycoplasma canis 29555 0 species Mycoplasma californicum 92 1 0 2113 48003 0 species 1 142 Mycoplasma pullorum Mycoplasma fermentans 1 215 species 0 2115 species Mycoplasma bovirhinis 1 145 0 29553 1 217 Mycoplasma bovigenitalium species 2112 0 Mycoplasma synoviae 1 147 species 0 2109 1 225 Mycoplasma bovis species 28903 0 171284 0 species 1 209 Mycoplasma cynos 2110 0 species 238 1 Mycoplasma agalactiae 186329 1 0 13 4154 Acholeplasmatales order 20 Acholeplasmataceae 12 4134 10 family 0 2146 1 1 2147 0 3159 5 Acholeplasma genus 72 species Acholeplasma oculi 793 1 0 35623 0 2148 species Acholeplasma laidlawii 734 1 0 38986 Acholeplasma palmae 1 903 species Acholeplasma brassicae 1 657 species 0 61635 965 6 Candidatus Phytoplasma genus 35 1 33926 0 195 1 species group 0 85630 species 1 195 Candidatus Phytoplasma mali 37692 0 species group 206 1 85632 0 59748 0 species 206 1 Candidatus Phytoplasma australiense 0 85620 529 3 species group Maize bushy stunt phytoplasma 1 166 species 0 202462 100379 0 species 1 203 Onion yellows phytoplasma Aster yellows witches'-broom phytoplasma 1 160 species 0 229545 0 186328 1 19 order Entomoplasmatales 39 9787 Entomoplasmataceae 3306 14 2 family 0 1 33925 1 46238 0 genus 8 864 5 Entomoplasma 214888 0 1 200 Entomoplasma luminosum species 1 204 Entomoplasma somnilux species 215578 0 Entomoplasma freundtii 1 153 species 0 74700 0 81459 Entomoplasma melaleucae 299 1 species 8 2440 Mesoplasma genus 48 1 46239 0 Mesoplasma chauliocola 215 1 species 0 216427 species 1 394 Mesoplasma florum 2151 0 225999 0 species 1 473 Mesoplasma syrphidae Mesoplasma tabanidae 1 203 species 0 219745 0 2149 Mesoplasma entomophilum 225 1 species 255 1 Mesoplasma coleopterae species 324078 0 0 138853 Mesoplasma lactucae 627 1 species 24 6462 Spiroplasmataceae family 31 1 2131 0 0 2132 1 Spiroplasma 6431 23 275 genus no rank 426 2 0 2637901 species 213 1 Spiroplasma sp. NBRC 100390 1914410 0 Spiroplasma sp. TU-14 213 1 species 0 1898044 species Spiroplasma litorale 308 1 0 216942 species 1 178 Spiroplasma apis 2137 0 species Spiroplasma kunkelii 241 1 0 47834 216933 0 species 1 238 Spiroplasma chrysopicola 0 2136 Spiroplasma monobiae 329 1 species species Spiroplasma cantharicola 287 1 0 362837 Spiroplasma citri 208 1 species 0 2133 216944 0 species 313 1 Spiroplasma sabaudiense 304 1 Spiroplasma mirum species 2144 0 0 315358 Spiroplasma eriocheiris 410 1 species species 267 1 Spiroplasma corruscae 216934 0 1 411 Spiroplasma culicicola species 216935 0 species 1 229 Spiroplasma syrphidicola 216945 0 2139 0 235 1 Spiroplasma clarkii species species 267 1 Spiroplasma turonicum 216946 0 0 216936 Spiroplasma diminutum 1 267 species species Spiroplasma atrichopogonis 1 312 0 1114980 0 216937 Spiroplasma floricola 1 299 species 0 216938 species Spiroplasma helicoides 1 281 2145 0 346 1 Spiroplasma taiwanense species 1 200795 0 phylum 8 47 21563 Chloroflexi class 10 4784 7 Anaerolineae 1 292625 0 0 292629 1 16 order Anaerolineales 4774 6 5 4758 Anaerolineaceae family 16 1 292628 0 genus 8 693 2 Brevefilum 1 2019482 0 species Brevefilum fermentans 1 685 0 1986204 0 233189 1157 1 genus species Anaerolinea thermophila 1157 1 0 167964 1 2892 no rank 0 1324991 1 2892 Anaerolineaceae bacterium oral taxon 439 species 1889813 0 1 475962 0 5 1789 Caldilineae class 4 0 1 475963 10 order Caldilineales 4 1785 family 3 1775 3 Caldilineaceae 1 475964 0 1 233191 0 1772 2 Caldilinea genus 13 Caldilinea aerophila 1759 1 species 0 133453 0 1 189775 Thermomicrobia 9 1963 21 class 0 85000 subclass 4 1536 1 85001 0 order 39 1536 4 Sphaerobacterales suborder 3 1497 0 255728 0 1 85002 53 family Sphaerobacteraceae 3 1497 0 1 2056 20 genus Sphaerobacter 2 1444 1 1424 Sphaerobacter thermophilus species 2057 0 order 3 4 406 Thermomicrobiales 1 189776 0 1 189777 0 403 3 Thermomicrobiaceae family 2 genus 2 401 2 Thermomicrobium 1 499 0 Thermomicrobium roseum 399 1 species 0 500 Ardenticatenia 3694 5 89 class 0 1 1382928 order 34 4 3605 Ardenticatenales 1 1382929 0 27 family Ardenticatenaceae 3571 3 0 1 1382930 25 genus Candidatus Promineofilum 3544 2 0 1 1988031 species Candidatus Promineofilum breve 1 3519 0 1806508 1 32061 0 5167 11 Chloroflexia class 32 0 32064 1 Chloroflexales 10 5135 18 order 1508594 0 5 2001 suborder family 4 5 2001 Chloroflexaceae 1106 1 0 Chloroflexus 1997 4 51 genus 0 1 1107 species Chloroflexus aggregans 634 1 0 152260 656 species Chloroflexus aurantiacus 2 1312 0 1 1108 0 480224 Chloroflexus sp. Y-400-fl 656 1 strain 1508595 0 3116 4 suborder 8 family Roseiflexaceae 3116 4 0 1 1508635 0 120961 1 12 genus Roseiflexus 3108 3 1799 1 no rank 2609473 0 1 1799 Roseiflexus sp. RS-1 species 357808 0 Roseiflexus castenholzii 1297 1 species 0 120962 Dehalococcoidia 9 4158 28 class 0 1 301297 1 order Dehalococcoidales 5 2442 0 1202465 1 0 1202464 1 Dehalococcoidaceae 2441 4 20 family 0 1 61434 1 genus Dehalococcoides 2421 3 no rank 445 1 0 237581 1522671 0 1 445 Dehalococcoides sp. UCH007 species species Dehalococcoides mccartyi 1975 1 0 61435 genus 5 3 1688 Dehalogenimonas 1 670486 0 species Dehalogenimonas lykanthroporepellens 1 823 0 552810 0 1839801 Dehalogenimonas formicexedens 1 860 species 0 1297 phylum 36 40226 224 class Deinococci 36 40226 0 188787 1 0 2762275 order 1169 3 Trueperaceae 3 1169 15 family 0 1 332247 1 332248 0 2 1154 Truepera genus 5 332249 0 species 1149 1 Truepera radiovictrix 260 order Deinococcales 15 26292 0 1 118964 0 1 183710 Deinococcaceae 14 26032 157 family 0 1 1298 Deinococcus 13 25875 283 genus Deinococcus radiodurans 2573 1 species 0 1299 1182571 0 species 3038 1 Deinococcus swuensis 2623546 0 no rank 1836 1 Deinococcus sp. NW-56 1836 1 species 0 2080419 species Deinococcus soli Cha et al. 2016 2454 1 0 1309411 55148 0 species 2646 1 Deinococcus proteolyticus Deinococcus deserti 1 1646 species 0 310783 species 1720 1 Deinococcus geothermalis 68909 0 0 1768108 species Deinococcus actinosclerus 1 2454 0 432329 species Deinococcus peraridilitoris 1350 1 0 502394 species Deinococcus gobiensis 2847 1 species Deinococcus maricopensis 1 1605 0 309887 1182568 0 1 1423 Deinococcus puniceus species 1 68933 0 order 163 12541 17 Thermales 1 188786 0 family 82 12378 16 Thermaceae 0 65551 1 10 genus Meiothermus 2475 3 species Meiothermus ruber 1489 1 0 277 52022 0 species 976 1 Meiothermus silvanus 1 186191 0 genus 11 2 751 Marinithermus 0 186192 species Marinithermus hydrothermalis 1 740 Thermus 8 6990 201 genus 0 1 270 1 726 Thermus scotoductus species 37636 0 species Thermus brockianus 459 1 0 56956 2619321 0 no rank 1 907 species Thermus sp. CCB_US3_UF1 907 1 0 1111069 0 456163 species Thermus parvatiensis 835 1 Thermus thermophilus 1889 1 species 0 274 0 271 species Thermus aquaticus 1 1214 0 56957 species Thermus oshimai 759 1 0 1 208447 Oceanithermus 2080 2 15 genus 0 187137 species Oceanithermus profundus 2065 1 1859062 0 no rank 2 534 Thermobaculum 2 534 43 genus 0 1 262406 0 166501 species Thermobaculum terrenum 491 1 56425 152 clade 1798711 0 1 1117 0 152 56425 Cyanobacteria phylum 36 1161 1 0 33 10866 Nostocales order 27 family 3 622 3 Hapalosiphonaceae 1 1892263 0 2 619 Fischerella genus 2 1 1190 0 617 1 no rank 494603 0 1752063 0 species 1 617 Fischerella sp. NIES-3754 0 1 1185 Rivulariaceae 3 668 4 family 1 373984 0 genus 2 2 664 Rivularia 662 1 no rank 2676603 0 species 1 662 Rivularia sp. PCC 7116 373994 0 1 325 no rank 1219117 0 0 1940762 species Nostocales cyanobacterium HT-58-2 325 1 family 36 17 6259 Nostocaceae 1 1162 0 Nostoc 10 4176 27 genus 0 1177 1 0 2593658 no rank 2868 7 species Nostoc sp. NIES-3756 1 362 0 1751286 0 28072 Nostoc sp. PCC 7524 453 1 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 635 species 0 1261031 0 317936 Nostoc sp. PCC 7107 297 1 species 1869241 0 species 435 1 Nostoc sp. CENA543 1618022 0 359 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 1 327 Nostoc sp. PCC 7120 species 103690 0 species 783 1 Nostoc flagelliforme 1306274 0 Nostoc punctiforme 498 1 species 0 272131 1341 4 Anabaena genus 2 1 1163 0 0 2619674 no rank 2 847 species Anabaena sp. 90 433 1 0 46234 0 1647413 Anabaena sp. WA102 1 414 species Anabaena cylindrica 1 492 species 0 1165 706 2 genus 0 264688 264691 0 392 1 Trichormus variabilis species 1164 0 314 1 Trichormus azollae species 2965 8 family 2661849 0 2965 8 Calothrix genus 36 1186 1 0 species 1 354 Calothrix parietina 32054 0 6 2575 no rank 2619626 0 0 1337936 Calothrix sp. 336/3 1 368 species species 1 326 Calothrix sp. PCC 7507 99598 0 Calothrix sp. NIES-2098 390 1 species 0 1954171 Calothrix sp. NIES-3974 296 1 species 0 2005462 Calothrix sp. NIES-4071 708 1 species 0 2005469 Calothrix sp. NIES-4101 1 487 species 0 2005461 10 order Pleurocapsales 7 920 0 52604 1 0 1890500 family 330 2 2 330 Pleurocapsa genus 3 1 44474 0 Pleurocapsa minor 327 1 species 0 54308 1 1890498 0 family 2 4 580 Dermocarpellaceae genus 1 3 578 Stanieria 102115 1 0 102116 0 species 279 1 Stanieria cyanosphaera 1 298 no rank 2642663 0 1807358 0 1 298 Stanieria sp. NIES-3757 species 0 1983111 no rank 260 1 718217 0 species 260 1 cyanobacterium endosymbiont of Epithemia turgida 1890505 0 850 2 order 0 1890528 2 850 family 2 850 Chroococcidiopsis genus 1 1 54298 0 54299 0 species 849 1 Chroococcidiopsis thermalis Gloeobacteria 3452 6 23 class 0 307596 1 42 order Gloeobacterales 5 3429 0 307595 1 1 1890422 0 family 24 3387 4 Gloeobacteraceae 1 33071 0 3363 3 Gloeobacter genus 29 33072 0 1 1869 Gloeobacter violaceus species 1 1465 Gloeobacter kilaueensis species 1416614 0 subclass 45 11207 0 1301283 Oscillatoriales 5215 21 28 order 0 1 1150 1003 5 Microcoleaceae family 1 1 1892252 0 44471 1 0 genus 4 411 2 Microcoleus 2642155 0 407 1 no rank 1173027 0 species 1 407 Microcoleus sp. PCC 7113 0 1 1205 Trichodesmium 2 591 1 genus species Trichodesmium erythraeum 590 1 0 1206 family 12 556 3 Cyanothecaceae 1 1892249 0 genus 40 544 2 Cyanothece 43988 1 0 0 2649277 no rank 1 504 1 504 Cyanothece sp. PCC 7425 species 395961 0 13 family Oscillatoriaceae 1718 6 0 1892254 1 13 genus Moorea 459 2 0 1155738 1 species Moorea producens 446 1 0 1155739 2 genus Oscillatoria 1246 3 0 1 1158 0 482564 species Oscillatoria nigro-viridis 1 687 species Oscillatoria acuminata 1 557 0 118323 583 3 Gomontiellaceae family 3 1892255 1 0 0 1 241421 1 genus Crinalium 580 2 241425 0 1 579 Crinalium epipsammum species family 2 1327 3 Coleofasciculaceae 1 1892251 0 0 1 63132 5 genus Geitlerinema 2 1325 1 1320 no rank 0 2648775 species Geitlerinema sp. PCC 7407 1320 1 0 1173025 1 1118 0 24 5992 Chroococcales order 7 1890450 1 0 2396 10 Aphanothecaceae family 1 genus 592 2 0 2546365 species 592 2 2546366 0 Cyanothece sp. PCC 8802 1 273 strain 0 395962 Cyanothece sp. PCC 8801 1 319 strain 0 41431 1 293 genus 0 263510 0 2546360 1 293 species 0 43989 Cyanothece sp. ATCC 51142 293 1 strain genus 933 2 28070 0 430 1 species 2546359 0 strain Cyanothece sp. PCC 7822 1 430 0 497965 2546356 0 species 503 1 strain 503 1 Cyanothece sp. PCC 7424 65393 0 1 1453359 0 2 222 Candidatus Atelocyanobacterium genus 1 0 713887 species Candidatus Atelocyanobacterium thalassa 1 221 0 92682 2 355 no rank Halothece 2 355 3 genus 0 76023 1 no rank 1 352 2632878 0 species Halothece sp. PCC 7418 1 352 0 65093 family 3 3 705 Cyanobacteriaceae 1 1890452 0 0 1 102234 2 genus Cyanobacterium 2 702 species Cyanobacterium aponinum 1 700 0 379064 1 1890464 0 1752 6 Chroococcaceae family 6 0 669357 1 4 genus Geminocystis 925 3 2 921 no rank 2625037 0 0 1615909 Geminocystis sp. NIES-3708 454 1 species 0 1617448 species Geminocystis sp. NIES-3709 467 1 357 1 genus 268175 0 0 2648896 357 1 no rank 0 2005460 species Chondrocystis sp. NIES-4102 1 357 0 102231 genus 464 1 1 464 no rank 2623012 0 464 1 Gloeocapsa sp. PCC 7428 species 1173026 0 6 family Microcystaceae 1132 4 0 1890449 1 1126 3 Microcystis genus 29 1 1125 0 371 1 no rank 0 2643300 1967666 0 species 1 371 Microcystis sp. MC19 1126 0 species 1 726 Microcystis aeruginosa 0 1890424 1 Synechococcales 57 28834 308 order 0 1890428 1 20 family Merismopediaceae 1013 5 0 1 1142 Synechocystis 4 993 34 genus 0 2640012 no rank 3 959 1147 0 species 1 365 Synechocystis sp. PCC 6714 0 2116702 Synechocystis sp. IPPAS B-1465 297 1 species 1148 0 297 1 Synechocystis sp. PCC 6803 species family 2 752 2303730 0 genus 7 752 2 Halomicronema 1 170610 0 1209493 0 1 745 Halomicronema hongdechloris species family 1 366 3 Pseudanabaenaceae 1 1890436 0 0 1 1152 1 genus Pseudanabaena 2 365 0 2593292 no rank 1 364 82654 0 364 1 Pseudanabaena sp. PCC 7367 species 16 family Leptolyngbyaceae 2660 6 0 1890438 1 0 47251 1 2 genus Leptolyngbya 5 2644 0 2650499 no rank 3 2073 species Leptolyngbya sp. NIES-3755 1 445 0 1752064 species 1 331 Leptolyngbya sp. PCC 7376 111781 0 0 1080068 Leptolyngbya sp. O-77 1297 1 species 0 1184 species Leptolyngbya boryana 1 569 2 417 family 0 1890429 0 155977 1 Acaryochloris 2 417 3 genus 1 414 Acaryochloris marina species 155978 0 Synechococcaceae 21444 33 174 family 0 1 1890426 0 1 13034 Dactylococcopsis 543 2 3 genus 0 292566 species Dactylococcopsis salina 1 540 243 genus Synechococcus 14953 26 0 1 1129 0 33070 Synechococcus lividus 520 1 species Synechococcus elongatus 648 1 species 0 32046 13542 23 no rank 0 2626047 1280380 0 species 622 1 Synechococcus sp. KORDI-100 166314 0 species 726 1 Synechococcus sp. WH 8109 species 1 240 Synechococcus sp. PCC 7117 195498 0 29410 0 species 739 1 Synechococcus sp. WH 8103 278 1 Synechococcus sp. PCC 7002 species 32049 0 0 64471 Synechococcus sp. CC9311 1 263 species species Synechococcus sp. PCC 73109 207 1 0 374982 1827144 0 species 1 291 Synechococcus sp. NIES-970 species 1 1111 Synechococcus sp. JA-2-3B'a(2-13) 321332 0 species Synechococcus sp. WH 8102 1 756 0 84588 species 1 852 Synechococcus sp. RCC307 316278 0 374981 0 1 303 Synechococcus sp. PCC 7003 species 195248 0 1 281 Synechococcus sp. PCC 8807 species 0 110662 species Synechococcus sp. CC9605 582 1 species Synechococcus sp. PCC 6312 257 1 0 195253 species 1 675 Synechococcus sp. UTEX 2973 1350461 0 species Synechococcus sp. CC9902 1 166 0 316279 0 1916956 Synechococcus sp. SynAce01 828 1 species 0 585423 species Synechococcus sp. KORDI-49 1 825 species Synechococcus sp. KORDI-52 625 1 0 585425 species Synechococcus sp. JA-3-3Ab 1 1726 0 321327 species Synechococcus sp. WH 7803 863 1 0 32051 1173263 0 species 1 326 Synechococcus sp. PCC 7502 1 167375 0 5512 3 Cyanobium genus 93 59930 0 2432 1 Cyanobium gracile species no rank 2987 1 0 2627006 2987 1 Cyanobium sp. NIES-981 species 1851505 0 0 146785 262 1 genus species 1 262 Thermosynechococcus elongatus 146786 0 family 3 1874 5 Prochloraceae 1 1213 0 2 genus Prochlorococcus 1871 4 0 1 1218 0 2627481 2 423 no rank species Prochlorococcus sp. MIT 0801 1 182 0 1501269 1501268 0 241 1 Prochlorococcus sp. MIT 0604 species species Prochlorococcus marinus 1446 1 0 1219 Actinobacteria 3611723 658 124 phylum 0 1 201174 1 1760 0 class 6543 602 2946056 Actinobacteria 85011 1 0 171240 82 Streptomycetales order 424 2062 1 0 family 1246 170816 81 Streptomycetaceae genus 158 10673 5 Kitasatospora 2063 1 0 68173 0 species 1 2145 Kitasatospora albolonga species Kitasatospora aureofaciens 1 2546 0 1894 2633591 0 no rank 3041 1 3041 1 Kitasatospora sp. MMS16-BH015 species 2018025 0 2066 0 2783 1 Kitasatospora setae species 6167 genus Streptomyces 158897 75 0 1 1883 1 1564 Streptomyces avermitilis species 33903 0 4649 1 Streptomyces hygroscopicus species 1912 0 47763 0 species 5464 1 Streptomyces lydicus 1888 0 species 4127 1 Streptomyces albus 68202 0 1 1408 Streptomyces fulvissimus species species 3038 1 Streptomyces bingchenggensis 379067 0 species Streptomyces malaysiensis 1 2198 0 92644 1916 0 1 2040 Streptomyces lividans species 164348 0 species 2245 1 Streptomyces puniciscabiei 0 1038928 Streptomyces xinghaiensis 1 1560 species Streptomyces lincolnensis 1 2239 species 0 1915 0 1901 Streptomyces clavuligerus 1809 1 species 1 2717 Streptomyces alfalfae species 1642299 0 0 1783515 species Streptomyces sp. S10(2016) 1887 1 0 1616117 Streptomyces formicae 1 1394 species 1935 0 1860 1 Streptomyces violaceoruber species species Streptomyces violaceusniger 2218 1 0 68280 0 38300 species Streptomyces pristinaespiralis 1 1777 42684 0 1 1857 Streptomyces collinus species species Streptomyces scabiei 2218 1 0 1930 species 1 2188 Streptomyces parvulus 146923 0 no rank 24 44384 0 2593676 species Streptomyces sp. FR-008 1 2149 0 206662 234612 0 species 1574 1 Streptomyces sp. TN58 1867 1 Streptomyces sp. CCM_MD2014 species 1561022 0 1 1533 Streptomyces sp. Tue 6075 species 1661694 0 0 1849967 Streptomyces sp. SAT1 1 1764 species species Streptomyces sp. WAC00288 1483 1 0 2094021 species 1 1931 Streptomyces sp. Mg1 465541 0 species 1 1344 Streptomyces sp. S8 1837283 0 0 1262452 species Streptomyces sp. 769 2507 1 Streptomyces sp. MOE7 1 1832 species 0 1961713 0 1984801 Streptomyces sp. CLI2509 1 1442 species species 1 1727 Streptomyces sp. 4F 1751294 0 species 1 1692 Streptomyces sp. 3211 1964449 0 species Streptomyces sp. CdTB01 1 2388 0 1725411 1972846 0 1743 1 Streptomyces sp. Sge12 species 0 862751 species Streptomyces sp. SirexAA-E 1321 1 444103 0 1900 1 Streptomyces sp. CNQ-509 species species Streptomyces sp. P3 1855 1 0 2135430 Streptomyces sp. CFMR 7 1662 1 species 0 1649184 0 2059884 species Streptomyces sp. CMB-StM0423 2206 1 1495638 0 2777 1 Streptomyces sp. M56 species 0 1265601 Streptomyces sp. PAMC 26508 1 1494 species 1812480 0 1916 1 Streptomyces sp. fd1-xmd species 1841249 0 species 2277 1 Streptomyces sp. RTd22 Streptomyces cyaneogriseus 1 1911 species 0 68192 Streptomyces ambofaciens 1643 1 species 0 1889 Streptomyces lavendulae 1571 1 species 0 1914 1971 0 species 1 2092 Streptomyces noursei 0 193462 Streptomyces niveus 1 1457 species 0 2049881 species Streptomyces sp. XZHG99 1447 1 2414 1 Streptomyces cattleya species 29303 0 362257 0 1 1763 Streptomyces vietnamensis species 1 1702 Streptomyces peucetius species 1950 0 species 1 2030 Streptomyces xiamenensis 408015 0 0 68214 species Streptomyces griseochromogenes 2054 1 1437453 0 species 1 2053 Streptomyces leeuwenhoekii 1 4096 Streptomyces pactum species 68249 0 species 1 2085 Streptomyces chartreusis 1969 0 0 1355015 Streptomyces pluripotens 1243 1 species 2 4036 species group 0 1477431 0 1902 species Streptomyces coelicolor 2006 1 Streptomyces sampsonii 1 2030 species 0 42239 species Streptomyces albulus 1 2105 0 68570 553510 0 species 1737 1 Streptomyces gilvosporeus Streptomyces reticuli 1 2072 species 0 1926 species Streptomyces alboflavus 2157 1 0 67267 1 2009 Streptomyces albireticuli species 1940 0 75293 0 species 2359 1 Streptomyces autolyticus species group 3441 2 629295 0 1482596 0 1737 1 species subgroup 1 1737 Streptomyces griseus species 1911 0 0 1482558 1704 1 species subgroup 0 1908 Streptomyces globisporus 1704 1 species 54571 0 1 3566 Streptomyces venezuelae species species 1 1781 Streptomyces glaucescens 1907 0 species 1 1756 Streptomyces rubrolavendulae 285473 0 species 1309 1 Streptomyces pratensis 1169025 0 52018 0 no rank 1 248 species 248 1 Actinobacteria bacterium IMCC26256 1650658 0 85010 1 0 42 59220 Pseudonocardiales order 190 2070 1 0 41 59030 Pseudonocardiaceae family 833 2 1207 Prauserella genus 7 142577 1 0 species Prauserella marina 1200 1 0 530584 43356 1 0 3028 2 Kutzneria genus 8 1 3020 Kutzneria albida species 43357 0 165301 1 0 2547 2 Lentzea genus 14 1586287 0 species 2533 1 Lentzea guizhouensis 0 1 1847 254 genus Pseudonocardia 8 11711 0 240495 Pseudonocardia dioxanivorans 1 1925 species 2619320 0 no rank 9532 6 species Pseudonocardia sp. HH130629-09 1 1585 0 1641402 species Pseudonocardia sp. AL041005-10 1 1772 0 445576 1688404 0 species 1598 1 Pseudonocardia sp. EC080610-09 Pseudonocardia sp. EC080619-01 1 1613 species 0 1096856 1690815 0 1 1513 Pseudonocardia sp. HH130630-07 species 1096868 0 1 1451 Pseudonocardia sp. EC080625-04 species 1 40566 0 genus 117 3 6061 Actinosynnema Actinosynnema mirum 2953 1 species 0 40567 Actinosynnema pretiosum 1 2991 species 0 42197 2 2392 Saccharopolyspora genus 11 1 1835 0 0 1836 species Saccharopolyspora erythraea 1 2381 2029 1 0 2379 2 Kibdelosporangium genus 2 Kibdelosporangium phytohabitans 2377 1 species 0 860235 5 genus Saccharomonospora 2 813 0 1851 1 1 808 Saccharomonospora viridis species 1852 0 2 2832 Saccharothrix genus 7 1 2071 0 species Saccharothrix espanaensis 2825 1 0 103731 8154 6 Actinoalloteichus genus 133 1 65496 0 species Actinoalloteichus hymeniacidonis 1350 1 0 340345 0 2644606 no rank 2 3224 0 1612551 species Actinoalloteichus sp. GBA129-24 1 1744 0 2072503 Actinoalloteichus sp. AHMU CJ021 1 1480 species Actinoalloteichus hoggarensis 1 1659 species 0 1470176 0 1612552 species Actinoalloteichus sp. ADI127-7 1 1788 Amycolatopsis 7 15278 189 genus 0 1 1813 species 1 3672 Amycolatopsis orientalis 31958 0 species Amycolatopsis mediterranei 1 3017 0 33910 0 2618356 no rank 2 4544 1911175 0 2204 1 Amycolatopsis sp. BJA-103 species species Amycolatopsis sp. AA4 2340 1 0 1896961 Amycolatopsis japonica 1810 1 species 0 208439 species 2046 1 Amycolatopsis methanolica 1814 0 1 674734 0 genus 5 2 1795 Alloactinosynnema 1 1790 no rank 2636053 0 species 1790 1 Alloactinosynnema sp. L-07 1653480 0 85006 1 0 133953 148 Micrococcales order 1276 5 family Brevibacteriaceae 3 1967 0 1 85019 0 1 1696 Brevibacterium 1962 2 18 genus 0 1703 Brevibacterium linens 1944 1 species 0 1 145357 71 family Dermacoccaceae 4075 7 0 57495 1 6 genus Dermacoccus 1060 2 species Dermacoccus nishinomiyaensis 1054 1 0 1274 genus 50 1681 2 Kytococcus 57499 1 0 1276 0 1 1631 Kytococcus sedentarius species 0 745364 1 Luteipulveratus 1263 2 16 genus 571913 0 1247 1 Luteipulveratus mongoliensis species Cellulomonadaceae 5406 6 45 family 0 85016 1 0 1707 1 121 genus Cellulomonas 5 5361 species 1 1536 Cellulomonas fimi 1708 0 species 1136 1 Cellulomonas gilvus 11 0 0 2620175 no rank 1 1069 2003551 0 1069 1 Cellulomonas sp. PSBB021 species 1711 0 1 1499 Cellulomonas flavigena species 577468 0 no rank 62 2 2 62 Tropheryma genus 2 1 2038 0 species Tropheryma whipplei 60 1 0 2039 39237 50 Microbacteriaceae family 468 85023 1 0 2 775 Microcella genus 3 1 337004 0 1 772 Microcella alkaliphila species 279828 0 1 33877 0 1701 2 Agromyces genus 19 0 453304 Agromyces aureus 1 1682 species genus 6 1353 2 Cnuibacter 1 1759331 0 0 1619308 Cnuibacter physcomitrellae 1 1347 species 1 1573 0 6 5608 Clavibacter genus 519 1068 species Clavibacter michiganensis 5089 5 0 28447 1 0 31964 subspecies Clavibacter sepedonicus 1136 1 1874630 0 subspecies 936 1 Clavibacter capsici 0 33014 Clavibacter insidiosus 1 975 subspecies subspecies Clavibacter nebraskensis 1 974 0 31963 0 110932 1 Leifsonia 2 2495 21 genus 0 1575 species Leifsonia xyli 2474 1 38 genus Microterricola 1510 2 0 518733 1 412690 0 1472 1 Microterricola viridarii species genus 1 2 331 Aurantimicrobium 1705353 1 0 0 708131 species Aurantimicrobium minutum 1 330 68 genus Cryobacterium 3905 3 0 69578 1 0 2649013 1 1858 no rank species Cryobacterium sp. LW097 1 1858 0 1978566 species Cryobacterium arcticum 1 1979 0 670052 Microbacterium 15134 14 362 genus 0 33882 1 species Microbacterium aurum 1297 1 0 36805 84292 0 990 1 Microbacterium chocolatum species 1053 1 Microbacterium paludicola species 300019 0 species Microbacterium hominis 1 1367 0 162426 8 9045 no rank 2609290 0 1714373 0 1365 1 Microbacterium sp. No. 7 species 1938334 0 1 916 Microbacterium sp. TPU 3598 species 367477 0 1 1005 Microbacterium sp. XT11 species 1 1273 Microbacterium sp. str. 'China' species 2103230 0 species Microbacterium sp. 1.5R 951 1 0 1916917 Microbacterium sp. PAMC 28756 1388 1 species 0 1795053 Microbacterium sp. BH-3-3-3 1 1260 species 0 1906742 1 887 Microbacterium sp. CGR1 species 1696072 0 2033 0 1020 1 Microbacterium testaceum species 2 1233 Frondihabitans genus 5 1 447237 0 no rank 1228 1 2626248 0 1795630 0 1228 1 Frondihabitans sp. PAMC 28766 species 1 2034 0 genus 58 3069 4 Curtobacterium species 992 1 Curtobacterium pusillum 69373 0 0 257496 no rank 2019 2 species Curtobacterium sp. BH-2-1-1 1 958 0 1905847 1061 1 Curtobacterium sp. MR_MD2014 species 1561023 0 0 1655488 no rank 3 436 3 436 clade 1655489 0 1 529883 0 436 3 Rhodoluna genus 2 0 535712 Candidatus Rhodoluna planktonica 199 1 species 0 529884 Rhodoluna lacicola 1 235 species Pontimonas 2 251 1 genus 0 1434032 1 Pontimonas salivibrio 1 250 species 0 1159327 1 33886 0 3 968 Rathayibacter genus 15 0 33888 species Rathayibacter tritici 636 1 0 145458 species Rathayibacter toxicus 317 1 125316 1 0 3 1391 Beutenbergiaceae family 6 genus 32 2 1385 Beutenbergia 1 84756 0 84757 0 species 1 1353 Beutenbergia cavernae 0 1 85022 16 family Jonesiaceae 409 3 0 43673 1 7 genus Jonesia 2 393 43674 0 species 386 1 Jonesia denitrificans 0 1 85020 Dermabacteraceae 11 10720 94 family 0 1 43668 207 genus Brachybacterium 9367 6 0 2017484 Brachybacterium sp. VM2412 2024 1 species 2623841 0 no rank 1 1784 0 1903186 species Brachybacterium sp. P6-10-X1 1784 1 species Brachybacterium ginsengisoli 1707 1 0 1331682 species Brachybacterium faecium 1 2066 0 43669 2017485 0 species 1 1579 Brachybacterium sp. VR2415 0 1 472568 Devriesea 661 2 2 genus Devriesea agamarum 659 1 species 0 472569 genus 1 598 2 Dermabacter 1 36739 0 species Dermabacter vaginalis 1 597 0 1630135 21 family Sanguibacteraceae 1299 3 0 1 145360 1278 2 Sanguibacter genus 20 60919 1 0 species 1258 1 Sanguibacter keddieii 60920 0 0 1 85017 Promicromonosporaceae 9 7459 167 family genus 13 1988 2 Xylanimonas 186188 1 0 186189 0 1975 1 Xylanimonas cellulosilytica species 2617 3 Isoptericola genus 29 254250 1 0 1162 1 Isoptericola variabilis species 139208 0 species Isoptericola dokdonensis 1 1426 0 372663 0 1 157920 19 genus Cellulosimicrobium 2687 3 1710 0 1483 1 Cellulosimicrobium cellulans species no rank 1 1185 2624466 0 1980001 0 species 1 1185 Cellulosimicrobium sp. TH-20 0 1 1268 Micrococcaceae 54460 39 1393 family 1742989 1 0 genus 6 2001 2 Glutamicibacter species Glutamicibacter arilaitensis 1 1995 0 256701 genus 54 4 4613 Pseudarthrobacter 1742993 1 0 0 85085 species Pseudarthrobacter chlorophenolicus 1697 1 species Pseudarthrobacter phenanthrenivorans 1 1408 0 361575 0 121292 Pseudarthrobacter sulfonivorans 1454 1 species 609 genus Arthrobacter 15 23522 0 1 1663 Arthrobacter alpinus 2904 1 species 0 656366 235627 0 12 18157 no rank species 1 1450 Arthrobacter sp. QXT-31 1357915 0 1771959 0 1 1116 Arthrobacter sp. ATCC 21022 species 0 1494608 species Arthrobacter sp. PAMC 25486 1339 1 0 1690248 Arthrobacter sp. LS16 1 2080 species species Arthrobacter sp. FB24 1512 1 0 290399 Arthrobacter sp. YN 1 1509 species 0 2020486 species 1 1765 Arthrobacter sp. U41 1849032 0 species Arthrobacter sp. ZXY-2 1103 1 0 1806905 1 940 Arthrobacter sp. Rue61a species 1118963 0 2079227 0 species 1579 1 Arthrobacter sp. PGP41 1 1789 Arthrobacter sp. ERGS1:01 species 1704044 0 species Arthrobacter sp. YC-RL1 1975 1 0 1652545 0 37928 species Arthrobacter crystallopoietes 1852 1 genus 1148 1 0 1742992 Paenarthrobacter aurescens 1 1148 species 0 43663 3 genus Renibacterium 434 2 0 1645 1 Renibacterium salmoninarum 1 431 species 0 1646 1881 2 Micrococcus genus 21 1 1269 0 1270 0 1 1860 Micrococcus luteus species 38 genus Neomicrococcus 2 2569 0 1868332 1 species Neomicrococcus aestuarii 1 2531 0 556325 1 57493 0 4239 4 Kocuria genus 107 0 72000 Kocuria rhizophila 1493 1 species species Kocuria flava 1529 1 0 446860 species Kocuria palustris 1110 1 0 71999 1722 2 Sinomonas genus 2 1 596707 0 37927 0 1 1720 Sinomonas atrocyanea species 32207 1 0 10287 3 Rothia genus 7 species 1 667 Rothia dentocariosa 2047 0 0 43675 species Rothia mucilaginosa 1 9613 0 2078575 genus 1 651 651 1 Arthrobacter sp. IHBB 11108 species 1618207 0 1 85018 0 2 617 Dermatophilaceae family 8 genus 1 609 1862 0 1 609 Dermatophilus congolensis species 1863 0 57 family Intrasporangiaceae 5575 9 0 1 85021 53457 1 0 genus 26 1235 2 Janibacter species 1209 1 Janibacter indicus 857417 0 2 1637 Serinicoccus genus 53 1 265976 0 1758689 0 1 1584 Serinicoccus sp. JLT9 species genus 44 1841 2 Arsenicicoccus 1 267408 0 1797 1 no rank 2663846 0 species 1 1797 Arsenicicoccus sp. oral taxon 190 1658671 0 1 53357 0 genus 10 805 2 Intrasporangium 0 53358 species Intrasporangium calvum 1 795 0 1 85007 1325 order Corynebacteriales 170143 162 2 421 no rank 697024 0 0 1847725 1 Lawsonella 421 2 11 genus 0 1528099 Lawsonella clevelandensis 410 1 species 0 1 1653 414 family Corynebacteriaceae 53687 52 genus 1481 53273 51 Corynebacterium 1 1716 0 species Corynebacterium camporealensis 1037 1 0 161896 0 136857 species Corynebacterium testudinoris 1 944 161899 0 species 1 928 Corynebacterium singulare 0 1121358 species Corynebacterium doosanense 1097 1 0 65058 species Corynebacterium ulcerans 1 597 0 203263 species Corynebacterium aquilae 843 1 species 1 1421 Corynebacterium marinum 349751 0 species 1 520 [Brevibacterium] flavum 92706 0 1717 0 964 1 Corynebacterium diphtheriae species 108486 0 1386 1 Corynebacterium falsenii species Corynebacterium crudilactis 1 475 species 0 1652495 1 762 Corynebacterium flavescens species 28028 0 1727 0 species 1 1332 Corynebacterium variabile species 3086 1 Corynebacterium vitaeruminis 38305 0 0 1408191 Corynebacterium deserti 740 1 species 1404244 0 species 1258 1 Corynebacterium glyciniphilum 89154 0 species 933 1 Corynebacterium terpenotabidum species 1 909 Corynebacterium ureicelerivorans 401472 0 1718 0 species 1491 1 Corynebacterium glutamicum 571915 0 1 354 Corynebacterium mustelae species Corynebacterium simulans 1 1608 species 0 146827 0 43770 species Corynebacterium striatum 1 2259 0 187491 Corynebacterium glaucum 1085 1 species species 631 1 Corynebacterium argentoratense 42817 0 0 575200 species Corynebacterium maris 1120 1 Corynebacterium resistens 619 1 species 0 258224 1 1526 Corynebacterium frankenforstense species 1230998 0 species Corynebacterium jeikeium 1967 1 0 38289 169292 0 species 1265 1 Corynebacterium aurimucosum 191610 0 species 899 1 Corynebacterium atypicum Corynebacterium pseudotuberculosis 1 455 species 0 1719 0 161879 species Corynebacterium kroppenstedtii 419 1 152794 0 1 1218 Corynebacterium efficiens species Corynebacterium imitans 1020 1 species 0 156978 468 1 Corynebacterium cystitidis species 35757 0 839 1 Corynebacterium casei species 160386 0 43771 0 1 1042 Corynebacterium urealyticum species no rank 1589 2 2624378 0 species Corynebacterium sp. ATCC 6931 854 1 0 1487956 0 702967 species Corynebacterium sp. NML98-0116 1 735 species 1 805 Corynebacterium ammoniagenes 1697 0 0 1705 Corynebacterium stationis 886 1 species 1072256 0 1 1105 Corynebacterium uterequi species 1050174 0 species 703 1 Corynebacterium epidermidicanis 0 225326 Corynebacterium halotolerans 1 1794 species 0 191493 species Corynebacterium sphenisci 1333 1 1 222 Corynebacterium kutscheri species 35755 0 1 1416 Corynebacterium humireducens species 1223514 0 1 621 Corynebacterium phocae species 161895 0 species 829 1 Corynebacterium callunae 1721 0 1231000 0 972 1 Corynebacterium lactis species 0 1 1762 283 family Mycobacteriaceae 56 61119 0 1866885 genus 13 18749 1705 1 Mycobacterium smegmatis species 1772 0 0 36814 species Mycobacterium rhodesiae 1 878 1810 0 species 1 1653 Mycobacterium vaccae 0 1771 Mycobacterium phlei 1 1938 species 1431 1 Mycobacterium gilvum species 1804 0 species 1312 1 Mycobacterium litorale 758802 0 species 1 1258 Mycobacterium chubuense 1800 0 species 1 1422 Mycobacterium thermoresistibile 1797 0 1766 0 species 1 1247 Mycobacterium fortuitum 0 110539 Mycobacterium vanbaalenii 1 1268 species species Mycobacterium aurum 1523 1 0 1791 1705 1 Mycobacterium goodii species 134601 0 1409 1 Mycobacterium neoaurum species 1795 0 0 1 1763 Mycobacterium 34147 34 2775 genus no rank 13919 13 2642494 0 2051552 0 species 1062 1 Mycobacterium sp. PYR15 Mycobacterium sp. VKM Ac-1817D 1151 1 species 0 1273687 164756 0 1 807 Mycobacterium sp. MCS species 212767 0 species 1177 1 Mycobacterium sp. JS623 0 1561223 species Mycobacterium sp. QIA-37 1 831 Mycobacterium sp. KMS 856 1 species 0 189918 0 1570328 species Mycobacterium sp. NRRL B-3805 1 1409 0 1879023 Mycobacterium sp. djl-10 1700 1 species 164757 0 species 1 892 Mycobacterium sp. JLS 1168287 0 species 307 1 Mycobacterium sp. MOTT36Y 1920667 0 species 1181 1 Mycobacterium sp. WY10 0 1545728 species Mycobacterium sp. EPa45 1 1191 0 1682113 species Mycobacterium sp. YC-RL4 1 1355 0 1781 Mycobacterium marinum 1 1143 species species 1 566 Mycobacterium haemophilum 29311 0 Mycobacterium liflandii 1 820 species 0 261524 0 1769 Mycobacterium leprae 256 1 species 1248 1 Mycobacterium kansasii species 1768 0 species 1 1060 Mycobacterium ulcerans 1809 0 species group 8 7106 0 120793 1138383 0 1 450 Mycobacterium paraintracellulare species species 1 2477 Mycobacterium avium 1764 0 Mycobacterium colombiense 1575 1 species 0 339268 0 1 1767 Mycobacterium intracellulare 4 1929 469 species 0 222805 Mycobacterium chimaera 825 1 subspecies 1203599 0 280 1 Mycobacterium yongonense subspecies 0 35617 subspecies Mycobacterium indicus pranii 1 355 species Mycobacterium marseillense 675 1 0 701042 2775 4 species group 0 77643 Mycobacterium tuberculosis 2090 3 804 species 0 1773 1 33894 0 biotype 1 619 Mycobacterium africanum 667 1 Mycobacterium bovis biotype 1765 0 685 1 Mycobacterium canettii species 78331 0 1 1285 Mycobacterium dioxanotrophicus species 482462 0 1194 1 species group 0 2249310 1194 1 Mycobacterium shigaense species 722731 0 670516 0 genus 4854 5 Mycobacterium abscessus 1 1725 species 0 36809 0 1774 Mycobacterium chelonae 1020 1 species 1578165 0 species 1 666 Mycobacterium saopaulense 0 83262 species Mycobacterium immunogenum 1 620 0 1520670 species Mycobacterium stephanolepidis 823 1 697025 0 1 607 genus 0 639313 Hoyosella subflava 607 1 species 2479 2 genus 0 1073531 1788 0 species 1 1121 Mycobacterium terrae 1358 1 Mycobacterium sinense species 875328 0 0 1 85026 86 family Gordoniaceae 9 7870 0 2053 1 Gordonia 7784 8 246 genus Gordonia polyisoprenivorans 1051 1 species 0 84595 species Gordonia terrae 1215 1 0 2055 species 1 1063 Gordonia iterans 1004901 0 no rank 2078 2 0 2657482 818 1 Gordonia sp. YC-JH1 species 2059875 0 species Gordonia sp. KTR9 1260 1 0 337191 species Gordonia bronchialis 1037 1 0 2054 Gordonia phthalatica 1 1094 species 0 1136941 0 1 85029 Dietziaceae 1684 4 15 family genus 15 3 1669 Dietzia 37914 1 0 0 2617939 957 1 no rank 712270 0 1 957 Dietzia sp. oral taxon 368 species 0 499555 Dietzia timorensis 1 697 species 316606 1 0 family 1 3 650 Segniliparaceae 0 286801 1 Segniliparus 649 2 19 genus 1 630 Segniliparus rotundus species 286802 0 40898 31 Nocardiaceae family 272 1 85025 0 1 1827 0 genus 992 23 25076 Rhodococcus 1044 1 Rhodococcus fascians species 1828 0 species Rhodococcus aetherivorans 1513 1 0 191292 1 1357 Rhodococcus ruber species 1830 0 37919 0 3289 1 Rhodococcus opacus species 192944 0 no rank 12 10330 0 1653478 Rhodococcus sp. PBTS 1 975 1 species 586 1 Rhodococcus sp. WMMA185 species 679318 0 0 1727214 Rhodococcus sp. H-CA8f 1 751 species species 476 1 Rhodococcus sp. BH4 1807790 0 935199 0 species 860 1 Rhodococcus sp. p52 0 1805827 species Rhodococcus sp. MTM3W5.2 1 1133 Rhodococcus sp. YL-1 602 1 species 0 1045808 0 1723645 species Rhodococcus sp. 008 733 1 species 998 1 Rhodococcus sp. B7740 1564114 0 741 1 Rhodococcus sp. 2G species 1570939 0 Rhodococcus sp. PBTS 2 854 1 species 0 1653479 1033922 0 species 1 1621 Rhodococcus sp. WB1 species Rhodococcus pyridinivorans 1 1009 0 103816 132919 0 1718 1 Rhodococcus jostii species 43767 0 1208 1 Rhodococcus hoagii species 0 1829 species Rhodococcus rhodochrous 813 1 1 587 Rhodococcus qingshengii species 334542 0 0 1833 species Rhodococcus erythropolis 1216 1 216 genus Nocardia 15550 7 0 1 1817 species Nocardia cyriacigeorgica 3556 1 0 135487 Nocardia seriolae 1 2295 species 0 37332 37326 0 species 3410 1 Nocardia brasiliensis species Nocardia nova 1671 1 0 37330 species 1 2225 Nocardia terpenica 455432 0 2177 1 Nocardia farcinica species 37329 0 1 85028 0 4 2489 Tsukamurellaceae family 14 genus 46 3 2475 Tsukamurella 1 2060 0 0 2061 Tsukamurella paurometabola 1 901 species Tsukamurella tyrosinosolvens 1 1528 species 0 57704 order 51 19 29366 Actinomycetales 2037 1 0 1 2049 0 29315 18 Actinomycetaceae family 3937 320 genus Actinomyces 9 15583 0 1 1654 no rank 3 5922 2609248 0 species 1 2469 Actinomyces sp. oral taxon 414 712122 0 0 2081702 Actinomyces sp. oral taxon 897 1 1814 species Actinomyces sp. Chiba101 1639 1 species 0 1851395 species Actinomyces sp. VUL4_3 1 269 0 1912795 species 2325 1 Actinomyces radicidentis 111015 0 544580 0 species 1 1635 Actinomyces oris Actinomyces gaoshouyii 1 1405 species 0 1960083 1 3707 Actinomyces pacaensis species 1852377 0 953 2 Actinotignum genus 10 1653174 1 0 species Actinotignum schaalii 943 1 0 59505 0 2529408 genus 1 2569 0 52773 Actinomyces meyeri 1 2569 species 1 493 genus 28263 0 28264 0 species 1 493 Arcanobacterium haemolyticum 2560 2 Trueperella genus 13 1 1069494 0 Trueperella pyogenes 2547 1 species 0 1661 119 genus Mobiluncus 2 3220 0 1 2050 2051 0 1 3101 Mobiluncus curtisii species 6 order Nakamurellales 4 2289 0 1 1643684 family 48 2283 3 Nakamurellaceae 85031 1 0 53460 1 0 2 2235 Nakamurella genus 28 Nakamurella multipartita 1 2207 species 0 53461 85014 1 0 order 6 4 1976 Glycomycetales Glycomycetaceae 1970 3 79 family 0 1 85034 0 1 283810 Stackebrandtia 2 1891 10 genus 283811 0 1881 1 Stackebrandtia nassauensis species 1643682 1 0 order 13 8 5644 Geodermatophilales Geodermatophilaceae 7 5631 106 family 0 1 85030 Modestobacter 2469 2 65 genus 0 1 88138 species 1 2404 Modestobacter marinus 477641 0 0 1 38501 Blastococcus 2 1240 3 genus 138336 0 1237 1 Blastococcus saxobsidens species 1860 1 0 genus 26 2 1816 Geodermatophilus species 1790 1 Geodermatophilus obscurus 1861 0 0 622452 1 1 order Kineosporiales 4 1797 1 83778 0 family 50 1796 3 Kineosporiaceae 0 1 33981 Kineococcus 2 1746 16 genus 131568 0 1730 1 Kineococcus radiotolerans species 1 85009 0 order 182 35084 34 Propionibacteriales 222 family Nocardioidaceae 13 11717 0 85015 1 0 1 182639 Kribbella 1798 2 37 genus 182640 0 1 1761 Kribbella flavida species 10 genus Pimelobacter 2012 2 0 1 2044 1 2002 Pimelobacter simplex species 2045 0 0 116071 1 18 genus Micropruina 2 1802 species Micropruina glycogenica 1 1784 0 75385 1 1839 0 4 4639 Nocardioides genus 54 2615069 0 no rank 1 1561 Nocardioides sp. JS614 1561 1 species 0 196162 1 1440 Nocardioides sp. 78 species 2045452 0 species 1 1584 Nocardioides dokdonensis 450734 0 1 2040 0 genus 60 1244 2 Aeromicrobium 1184 1 Aeromicrobium erythreum species 2041 0 family 294 20 23185 Propionibacteriaceae 31957 1 0 1372 1 genus 0 2801844 Pseudopropionibacterium propionicum 1372 1 species 0 1750 1 1912215 0 2227 2 Acidipropionibacterium genus 11 0 1748 species Acidipropionibacterium acidipropionici 1 2216 0 1 1912216 Cutibacterium 3771 4 13 genus 0 33011 Cutibacterium granulosum 821 1 species 33010 0 species 1930 1 Cutibacterium avidum 1747 0 species 1 1007 Cutibacterium acnes genus 50 3 4231 Propionibacterium 1 1743 0 0 1744 species Propionibacterium freudenreichii 1 3415 2608905 0 766 1 no rank 671223 0 species 766 1 Propionibacterium sp. oral taxon 193 genus 1 2 2704 Propionimicrobium 1 203133 0 2703 1 no rank 2633994 0 0 1871034 Propionimicrobium sp. Marseille-P3275 2703 1 species 1 29404 0 genus 8 2 1331 Microlunatus 0 29405 Microlunatus phosphovorus 1323 1 species 72763 1 0 5 7255 Tessaracoccus genus 77 no rank 2109 1 2635419 0 Tessaracoccus sp. T2.5-30 1 2109 species 0 1909732 0 399497 species Tessaracoccus flavescens 1 1689 species Tessaracoccus aquimaris 1 2024 0 1332264 1610493 0 species 1 1356 Tessaracoccus flavus Candidatus Nanopelagicales 12 2504 11 order 0 2039638 1 2493 11 family 0 2162846 genus 21 630 4 Candidatus Nanopelagicus 1 2039639 0 species 1 214 Candidatus Nanopelagicus hibericus 1884915 0 Candidatus Nanopelagicus limnes 1 118 species 0 1884634 species Candidatus Nanopelagicus abundans 277 1 0 1884916 24 genus Candidatus Planktophila 7 1863 0 622681 1 573600 0 species 1 289 Candidatus Planktophila limnetica 0 1884907 Candidatus Planktophila vernalis 188 1 species 1884904 0 1 300 Candidatus Planktophila sulfonica species 0 1884914 Candidatus Planktophila dulcis 1 331 species 0 1884905 species Candidatus Planktophila versatilis 1 474 257 1 Candidatus Planktophila lacus species 1884913 0 1 85013 0 order 17 7 7020 Frankiales 120 family Frankiaceae 7003 6 0 1 74712 0 1 1854 99 genus Frankia 5 6883 298654 0 1 2273 Frankia inefficax species 0 106370 Frankia casuarinae 1 907 species 1 1814 no rank 2632575 0 species Frankia sp. EAN1pec 1814 1 0 298653 1790 1 Frankia alni species 1859 0 249 order Bifidobacteriales 25 2263519 0 1 85004 1 31953 0 family 6276 2263270 24 Bifidobacteriaceae genus 681 1 0 196081 1 681 Scardovia inopinata species 78259 0 genus 1635 2253769 19 Bifidobacterium 1 1678 0 0 216816 Bifidobacterium longum 270657 1 species 0 1680 species Bifidobacterium adolescentis 489743 1 species 987 1 Bifidobacterium indicum 1691 0 28026 0 species 870154 1 Bifidobacterium pseudocatenulatum 0 1689 species Bifidobacterium dentium 1 8411 species 5701 1 Bifidobacterium scardovii 158787 0 107668 species Bifidobacterium catenulatum 2 352343 0 1 1686 244675 1 Bifidobacterium kashiwanohense subspecies 630129 0 species 1 4146 Bifidobacterium pseudolongum 1694 0 0 1684 Bifidobacterium asteroides 1 2028 species 145881 1 Bifidobacterium bifidum species 1681 0 species Bifidobacterium breve 70489 1 0 1685 3324 1 Bifidobacterium animalis species 28025 0 33905 0 1 4032 Bifidobacterium thermophilum species 638619 0 species 1862 1 Bifidobacterium actinocoloniiforme species 18984 1 Bifidobacterium angulatum 1683 0 species Bifidobacterium coryneforme 953 1 0 1687 Bifidobacterium choerinum 1 2439 species 0 35760 2701 0 genus 1098 1 species Gardnerella vaginalis 1098 1 0 2702 Parascardovia 2 1446 1 genus 0 196082 1 78258 0 1 1445 Parascardovia denticolens species 3 1152 order 0 622450 1 622451 0 family 46 3 1152 Actinopolysporaceae 0 1 1849 5 genus Actinopolyspora 1106 2 Actinopolyspora erythraea 1 1101 species 0 414996 16 19645 Streptosporangiales order 127 1 85012 0 2004 1 0 family 98 5 8197 Streptosporangiaceae 1 2000 0 genus 25 2906 2 Streptosporangium 2001 0 species 1 2881 Streptosporangium roseum 67 genus Nonomuraea 2 5193 0 83681 1 2593643 0 1 5126 no rank 1909395 0 species 5126 1 Nonomuraea sp. ATCC 55076 Nocardiopsaceae 8126 7 133 family 0 83676 1 genus 4 2 1090 Thermobifida 1 83677 0 species Thermobifida fusca 1086 1 0 2021 0 2013 1 Nocardiopsis 4 6903 104 genus 0 280236 species Nocardiopsis gilva 2297 1 1579 1 Nocardiopsis alba species 53437 0 0 2014 Nocardiopsis dassonvillei 2923 1 species 0 1 2012 Thermomonosporaceae 3195 3 23 family 0 1 2019 Thermomonospora 2 3172 102 genus 0 2020 species Thermomonospora curvata 1 3070 0 1643818 no rank 1234 2 9 genus Thermobispora 2 1234 0 147067 1 2006 0 1225 1 Thermobispora bispora species 57 order Micromonosporales 29453 20 0 85008 1 family 493 19 29396 Micromonosporaceae 28056 1 0 genus 73 6449 4 Plantactinospora 1 673534 0 2631981 0 no rank 3 6376 1 2449 Plantactinospora sp. KBS50 species 2024580 0 0 2071627 Plantactinospora sp. BB1 1880 1 species 2108470 0 2047 1 Plantactinospora sp. BC1 species 0 1865 1 Actinoplanes 6 13116 227 genus 1866 0 species 1 2392 Actinoplanes missouriensis 2699 1 Actinoplanes friuliensis species 196914 0 7798 3 no rank 0 2626549 0 2033844 species Actinoplanes sp. SE50 1 2321 0 649831 species Actinoplanes sp. N902-109 1 3157 0 134676 species Actinoplanes sp. SE50/110 1 2320 0 1 168694 Salinispora 3 2599 13 genus 0 168695 species Salinispora tropica 1 984 168697 0 1602 1 Salinispora arenicola species 189 genus Micromonospora 4 6730 0 1 1873 1 2585 no rank 0 2617518 0 648999 species Micromonospora sp. L5 2585 1 2192 1 Micromonospora aurantiaca species 47850 0 species 1 1764 Verrucosispora maris 1003110 0 genus Verrucosispora 1 9 0 84593 2 order Acidothermales 4 431 0 1 1643683 10 family Acidothermaceae 429 3 0 1 85032 1 28048 0 2 419 Acidothermus genus 5 0 28049 Acidothermus cellulolyticus 1 414 species 13 order Catenulisporales 4 3595 0 414714 1 Catenulisporaceae 3 3582 39 family 0 1 414877 0 414878 1 Catenulispora 3543 2 37 genus 3506 1 Catenulispora acidiphila species 304895 0 1752188 0 820 4 no rank 1848755 0 species 1 116 Actinobacteria bacterium IMCC26077 1848754 0 species 165 1 Actinobacteria bacterium IMCC19121 1848255 0 species 312 1 Actinobacteria bacterium IMCC25003 species Actinobacteria bacterium IMCC26103 1 227 0 1848756 6 2572 Rubrobacteria class 46 84995 1 0 5 2526 Rubrobacterales order 66 1 84996 0 0 1 84997 Rubrobacteraceae 2460 4 38 family 0 1 42255 77 genus Rubrobacter 2422 3 0 42256 species Rubrobacter radiotolerans 748 1 49319 0 1 1597 Rubrobacter xylanophilus species class 8 5 2610 Thermoleophilia 1497346 1 0 1 588673 0 4 2602 Solirubrobacterales order 50 family 19 3 2552 Conexibacteraceae 320583 1 0 1 191494 0 genus 31 2 2533 Conexibacter 191495 0 2502 1 Conexibacter woesei species 84998 1 0 33 657891 Coriobacteriia class 606 1 1643822 0 18 76122 Eggerthellales order 615 Eggerthellaceae 75507 17 6351 family 0 1643826 1 1 79603 0 2 4474 Denitrobacterium genus 8 4466 1 Denitrobacterium detoxificans species 79604 0 10928 2 Adlercreutzia genus 6 447020 1 0 species 10922 1 Adlercreutzia equolifaciens 446660 0 Phoenicibacter 2 3189 2 genus 0 1981050 1 1944646 0 3187 1 Phoenicibacter massiliensis species 0 1 644652 Gordonibacter 3 22899 174 genus 1841863 0 10085 1 Gordonibacter massiliensis species species Gordonibacter urolithinfaciens 12640 1 0 1335613 0 1 84108 Slackia 8493 2 29 genus 84110 0 8464 1 Slackia heliotrinireducens species genus 1 2 1205 Cryptobacterium 84162 1 0 species 1 1204 Cryptobacterium curtum 84163 0 153 genus Eggerthella 17968 3 0 1 84111 0 84112 Eggerthella lenta 13621 1 species 4194 1 no rank 0 2648737 species 1 4194 Eggerthella sp. YY7918 502558 0 Coriobacteriales 14 581163 390 order 0 1 84999 family 721 549320 6 Coriobacteriaceae 1 84107 0 81 genus Collinsella 2 537798 0 102106 1 74426 0 species 537717 1 Collinsella aerofaciens 0 1 33870 Coriobacterium 5703 2 5 genus species Coriobacterium glomerans 5698 1 0 33871 84113 0 no rank 5098 1 species 5098 1 Coriobacteriaceae bacterium 68-1-3 1531429 0 family 193 31453 7 Atopobiaceae 1643824 1 0 1380 0 1 12 Atopobium genus 0 1 133925 Olsenella 4 28850 182 genus 1805478 0 species 1 15328 Olsenella sp. Marseille-P2300 133926 0 8488 1 Olsenella uli species 2638792 0 no rank 1 4852 species 4852 1 Olsenella sp. oral taxon 807 712411 0 2767353 0 genus 1 2398 0 1382 Atopobium parvulum 1 2398 species 1 84992 0 7 1650 Acidimicrobiia class 15 0 84993 1 59 order Acidimicrobiales 6 1635 2448023 0 family 1244 2 12 genus Ilumatobacter 1244 2 0 682522 1 0 467094 species Ilumatobacter coccineus 1 1232 16 family Acidimicrobiaceae 332 3 0 84994 1 0 1 53634 Acidimicrobium 2 316 3 genus 53635 0 313 1 Acidimicrobium ferrooxidans species 17242411 723 Firmicutes phylum 322 1239 1 0 1 730 no rank 84086 0 species 730 1 endosymbiont 'TC1' of Trimyema compressum 243899 0 91061 1 0 431 616465 Bacilli class 385 1385 1 0 266 302806 Bacillales order 800 0 539002 8 5246 no rank 7 4130 no rank 0 539742 genus 135 4130 7 Exiguobacterium 1 33986 0 0 2644629 no rank 4 2567 species Exiguobacterium sp. U13-1 1 624 0 1849031 0 1224749 species Exiguobacterium sp. ZWU0009 1 553 0 1399115 Exiguobacterium sp. MH3 1 567 species 0 360911 species Exiguobacterium sp. AT1b 823 1 1 793 Exiguobacterium sibiricum species 332410 0 species 635 1 Exiguobacterium antarcticum 132920 0 539738 0 no rank 1116 1 1378 0 genus 1 1116 2624949 0 1 1116 no rank Gemella sp. oral taxon 928 1116 1 species 0 1785995 9 9090 Alicyclobacillaceae family 65 1 186823 0 46 genus Alicyclobacillus 2 2548 0 29330 1 0 405212 Alicyclobacillus acidocaldarius 2502 1 species 1 1129704 0 genus 57 2039 3 Kyrpidia 33943 0 species 1064 1 Kyrpidia tusciae species 1 918 Kyrpidia sp. EA-1 2055160 0 Tumebacillus 4438 3 40 genus 0 432330 1 1903704 0 species 2807 1 Tumebacillus avium 0 1214604 species Tumebacillus algifaecis 1591 1 186817 1 0 family 450 119 125861 Bacillaceae 2123 2 genus 0 2675230 0 859143 species Bacillus kochii 930 1 665099 0 species 1193 1 Bacillus oceanisediminis 0 1 84406 Virgibacillus 7 5031 22 genus 801 1 Virgibacillus necropolis species 163877 0 Virgibacillus halodenitrificans 893 1 species 0 1482 2017483 0 species 876 1 Virgibacillus phasianinus 2 1767 no rank 2620237 0 species 1 719 Virgibacillus sp. SK37 403957 0 1911587 0 1 1048 Virgibacillus sp. 6R species 1473 0 species 1 672 Virgibacillus pantothenticus genus 2 977 2 Amphibacillus 29331 1 0 1449 0 species 975 1 Amphibacillus xylanus 0 400634 1 114 genus Lysinibacillus 5 4802 735 1 no rank 0 2636778 0 2072025 species Lysinibacillus sp. YS11 1 735 2145 1 Lysinibacillus sphaericus species 1421 0 species 1006 1 Lysinibacillus fusiformis 28031 0 species Lysinibacillus varians 802 1 0 1145276 genus 6116 5 2675234 0 79885 0 species 1 971 Bacillus pseudofirmus 0 79880 Bacillus clausii 1 2014 species Bacillus halodurans 947 1 species 0 86665 species 1 804 Bacillus krulwichiae 199441 0 300825 0 species 1 1380 Bacillus lehensis 1 150247 0 genus 26 6 4501 Anoxybacillus species 1248 1 Anoxybacillus flavithermus 33934 0 294699 0 species 1 624 Anoxybacillus amylolyticus 1780 2 no rank 2639704 0 species 1 912 Anoxybacillus sp. B2M1 1490052 0 1490057 0 1 868 Anoxybacillus sp. B7M1 species 198467 0 species 823 1 Anoxybacillus gonensis 2 943 Aeribacillus genus 1 1 1055323 0 33936 0 species 942 1 Aeribacillus pallidus 0 1 129337 Geobacillus 11851 15 818 genus species group 3530 4 1505648 0 0 33938 species Geobacillus thermocatenulatus 785 1 1 820 Geobacillus lituanicus species 169283 0 1480 1 Geobacillus thermoleovorans species 33941 0 0 1462 species Geobacillus kaustophilus 445 1 0 33940 Geobacillus thermodenitrificans 1133 1 species 0 2642459 no rank 3220 6 0 581103 Geobacillus sp. Y4.1MC1 854 1 species Geobacillus sp. Y412MC52 380 1 species 0 550542 0 691437 Geobacillus sp. C56-T3 1 445 species 0 1233873 species Geobacillus sp. GHH01 462 1 species 1 375 Geobacillus sp. Y412MC61 544556 0 471223 0 species 1 704 Geobacillus sp. WCH70 1175 1 Geobacillus stearothermophilus species 1422 0 0 129338 species Geobacillus subterraneus 1 1068 0 1921421 species Geobacillus genomosp. 3 1 907 0 1 1329200 Fictibacillus 1907 3 11 genus 1221500 0 1 921 Fictibacillus phosphorivorans species 0 255247 Fictibacillus arsenicus 1 975 species 58 76848 Bacillus genus 3368 1 1386 0 653685 0 species group 16589 9 1402 0 1451 1 Bacillus licheniformis species 0 72361 species Bacillus vallismortis 1 211 Bacillus atrophaeus 1260 1 species 0 1452 species Bacillus paralicheniformis 1443 1 0 1648923 0 1938374 species subgroup 3 5064 0 492670 Bacillus velezensis 1 1887 species 1 915 Bacillus siamensis species 659243 0 0 1390 Bacillus amyloliquefaciens 1 2262 species Bacillus sonorensis 1 1451 species 0 119858 0 1423 Bacillus subtilis 5709 1 species species Bacillus infantis 1 1692 0 324767 632773 0 species 1041 1 Bacillus beveridgei 1 821 Bacillus cellulosilyticus species 1413 0 species 926 1 Bacillus horikoshii 79883 0 0 86664 species Bacillus flexus 806 1 1471 0 1 1018 Bacillus methanolicus species 1 742 Bacillus weihaiensis species 1547283 0 1103 1 Bacillus endophyticus species 135735 0 1664069 0 species 1 1916 Bacillus glycinifermentans 0 561879 Bacillus safensis 1748 1 species 0 86661 10 19029 species group 952 1 Bacillus cytotoxicus species 580165 0 species Bacillus thuringiensis 5371 1 0 1428 species 625 1 Bacillus anthracis 1392 0 563 1 Bacillus bombysepticus species 658666 0 0 1405 species Bacillus mycoides 2307 1 species Bacillus cereus 1 6453 0 1396 3 2057 no rank 0 2750818 2053832 0 species 549 1 Bacillus sp. HBCD-sjtu 0 1892404 species Bacillus sp. ABP14 1 510 Bacillus sp. FDAARGOS_235 998 1 species 0 1839798 0 155322 Bacillus toyonensis 1 701 species Bacillus gibsonii 186 1 species 0 79881 1479 0 882 1 Bacillus smithii species Bacillus cohnii 977 1 species 0 33932 Bacillus xiamenensis 1 844 species 0 1178537 1035 1 species group 1792192 0 species Bacillus altitudinis 1 1035 0 293387 185979 0 12198 19 no rank 0 1774743 Bacillus sp. SDLI1 1 912 species 1570330 0 194 1 Bacillus sp. BH072 species 563169 0 species 1 525 Bacillus sp. SJ-10 1127744 0 species 1 565 Bacillus sp. JS Bacillus sp. WP8 963 1 species 0 756828 species 916 1 Bacillus sp. X1(2014) 1565991 0 2049935 0 species 166 1 Bacillus sp. Lzh-5 0 2026248 Bacillus sp. 1s-1 999 1 species 0 1409 species Bacillus sp. (in: Bacteria) 1 253 species Bacillus sp. Pc3 494 1 0 1446792 1628753 0 species 232 1 Bacillus sp. LM 4-2 species 627 1 Bacillus sp. FJAT-14266 1837130 0 species Bacillus sp. 275 442 1 0 1941347 Bacillus sp. OxB-1 1 1017 species 0 98228 species Bacillus sp. MD-5 499 1 0 2009331 species Bacillus sp. YP1 1 312 0 1574141 species 1 1088 Bacillus sp. 1NLA3E 666686 0 0 1827146 species Bacillus sp. IHB B 7164 992 1 1856406 0 species 1002 1 Bacillus sp. H15-1 species 1 876 Bacillus aryabhattai 412384 0 1398 0 species 1 3242 Bacillus coagulans 3525 1 Bacillus pumilus species 1408 0 species 1 2284 Bacillus megaterium 1404 0 1 1057 genus 0 351195 1230341 0 species 1 1057 Salimicrobium jeotgali 0 459532 genus 1 1202 species Terribacillus aidingensis 1202 1 0 586416 Lentibacillus 2 983 5 genus 0 1 175304 species Lentibacillus amyloliquefaciens 1 978 0 1472767 1 genus Oceanobacillus 1363 2 0 182709 1 1362 1 Oceanobacillus iheyensis species 182710 0 0 2675229 2796 2 genus species 1782 1 Bacillus simplex 1478 0 Bacillus muralis 1014 1 species 0 264697 1 45667 0 1834 3 Halobacillus genus 2 1570 0 913 1 Halobacillus halophilus species Halobacillus mangrovi 919 1 species 0 402384 genus 1 2 1077 Parageobacillus 1906945 1 0 1076 1 Parageobacillus thermoglucosidasius species 1426 0 18 family Listeriaceae 6572 9 0 186820 1 genus 8 2 645 Brochothrix 2755 1 0 species Brochothrix thermosphacta 1 637 0 2756 genus 47 5909 6 Listeria 1 1637 0 0 1640 species Listeria seeligeri 753 1 0 1638 species Listeria ivanovii 1 1114 774 1 Listeria innocua species 1642 0 Listeria monocytogenes 2386 1 species 0 1639 species Listeria welshimeri 835 1 0 1643 0 186821 1 2 family Sporolactobacillaceae 2 1324 0 663587 no rank 1322 1 85683 0 species 1 1322 [Bacillus] selenitireducens Planococcaceae 20485 26 111 family 0 186818 1 0 648802 1 Rummeliibacillus 755 2 2 genus 0 241244 Rummeliibacillus stabekisii 1 753 species 5303 5 Sporosarcina genus 55 1569 1 0 2435 2 no rank 2647733 0 Sporosarcina sp. P33 1 1245 species 0 1930764 1930546 0 1190 1 Sporosarcina sp. P37 species 1476 0 1 730 Sporosarcina psychrophila species 0 1571 Sporosarcina ureae 1 2083 species 1 157226 0 genus 2 1319 2 Jeotgalibacillus 0 1508404 species Jeotgalibacillus malaysiensis 1 1317 genus 32 2490 3 Solibacillus 1 648800 0 0 76853 Solibacillus silvestris 1660 1 species 1 798 no rank 0 2637870 0 2048654 Solibacillus sp. R5-41 1 798 species 9603 12 Planococcus genus 147 1 1372 0 species Planococcus plakortidis 942 1 0 1038856 2662419 0 2 1653 no rank 0 1526927 species Planococcus sp. PAMC 21323 400 1 0 2058136 Planococcus sp. MB-3u-03 1253 1 species species Planococcus antarcticus 794 1 0 161360 Planococcus sp. L10.15 460 1 species 0 1302659 1215089 0 569 1 Planococcus halocryophilus species 0 1374 species Planococcus kocurii 565 1 0 414778 Planococcus donghaensis 618 1 species species 2197 1 Planococcus maritimus 192421 0 Planococcus faecalis 611 1 species 0 1598147 species 1047 1 Planococcus rifietoensis 200991 0 1649 0 genus 1 904 0 2644826 no rank 1 904 904 1 Kurthia sp. 11kri321 species 1750719 0 1 186824 0 1809 4 Thermoactinomycetaceae family 19 1677050 1 0 2 1771 Novibacillus genus 77 Novibacillus thermophilus 1694 1 species 0 1471761 0 292635 Laceyella 19 1 genus 0 1 90964 1235 family Staphylococcaceae 42 27731 45669 1 0 1066 2 Salinicoccus genus 39 0 407035 species Salinicoccus halodurans 1 1027 genus 37 377 2 Auricoccucs 2005363 1 0 1849491 0 1 340 Auricoccus indicus species 1 1279 0 genus 638 33 22581 Staphylococcus 70255 0 species 1 750 Staphylococcus condimenti 0 214473 species Staphylococcus nepalensis 501 1 0 29382 species Staphylococcus cohnii 1 524 0 91994 1 514 no rank 514 1 Staphylococcus sp. AntiMn-1 species 1715860 0 species Staphylococcus piscifermentans 557 1 0 70258 0 170573 species Staphylococcus pettenkoferi 475 1 species Staphylococcus capitis 1 486 0 29388 1 562 Staphylococcus stepanovicii species 643214 0 Staphylococcus lutrae 483 1 species 0 155085 0 283734 species Staphylococcus pseudintermedius 1 1079 0 1295 Staphylococcus schleiferi 1 557 species Staphylococcus hyicus 584 1 species 0 1284 species Staphylococcus warneri 592 1 0 1292 1 941 Staphylococcus epidermidis species 1282 0 species Staphylococcus haemolyticus 1 632 0 1283 1290 0 species 1 494 Staphylococcus hominis species 436 1 Staphylococcus kloosii 29384 0 246432 0 species 1 675 Staphylococcus equorum 581 1 Staphylococcus saprophyticus species 29385 0 species Staphylococcus carnosus 649 1 0 1281 0 45972 Staphylococcus pasteuri 1 1176 species species Staphylococcus muscae 1 472 0 1294 46127 0 species 1 851 Staphylococcus felis 546 1 Staphylococcus argenteus species 985002 0 1 491 Staphylococcus agnetis species 985762 0 Staphylococcus xylosus 911 1 species 0 1288 species 1 2467 Staphylococcus aureus 1280 0 Staphylococcus lugdunensis 1 488 species 0 28035 0 61015 species Staphylococcus succinus 459 1 0 1286 Staphylococcus simulans 746 1 species 308354 0 636 1 Staphylococcus simiae species 1296 0 species 628 1 Staphylococcus sciuri 0 69965 1 Macrococcus 4 2472 8 genus no rank 1 735 2619255 0 0 1898474 Macrococcus sp. IME1552 1 735 species 69966 0 species 1 1007 Macrococcus caseolyticus Macrococcus canis 722 1 species 0 1855823 family 472 46 103888 Paenibacillaceae 1 186822 0 no rank 2657 3 85151 0 1 55079 0 genus 2 3 2657 Aneurinibacillus 0 2642329 no rank 1178 1 Aneurinibacillus sp. XH2 1 1178 species 0 1450761 1500254 0 1477 1 Aneurinibacillus soli species Thermobacillus 4316 2 23 genus 0 76632 1 4293 1 Thermobacillus composti species 377615 0 36 91691 Paenibacillus genus 831 1 44249 0 3203 1 Paenibacillus graminis species 189425 0 Paenibacillus durus 1 4578 species 0 44251 172713 0 1755 1 Paenibacillus kribbensis species species 1 2755 Paenibacillus sabinae 365617 0 Paenibacillus polymyxa 1 4651 species 0 1406 0 61624 Paenibacillus mucilaginosus 5218 1 species 3958 1 Paenibacillus stellifer species 169760 0 1 2540 Paenibacillus ihbetae species 1870820 0 1 3146 species group 2044880 0 483937 0 3146 1 Paenibacillus riograndensis species 1126833 0 2243 1 Paenibacillus beijingensis species 185978 0 13 32404 no rank Paenibacillus sp. FSL H7-0357 1 3408 species 0 1536774 0 1566358 species Paenibacillus sp. IHBB 10380 1 849 3461 1 Paenibacillus sp. FSL R7-0331 species 1536773 0 1536769 0 3809 1 Paenibacillus sp. FSL P4-0081 species species Paenibacillus sp. FSL R7-0273 3834 1 0 1536772 species Paenibacillus sp. BIHB4019 2047 1 0 1870819 0 324057 species Paenibacillus sp. JDR-2 2301 1 0 2069255 species Paenibacillus sp. lzh-N1 1 1129 3740 1 Paenibacillus sp. FSL R5-0912 species 1536771 0 species 1392 1 Paenibacillus sp. FSL R5-0345 1536770 0 0 481743 species Paenibacillus sp. Y412MC10 2531 1 0 1695218 species Paenibacillus sp. 32O-W 2414 1 Paenibacillus sp. FSL H7-0737 1 1489 species 0 1536775 species Paenibacillus borealis 3705 1 0 160799 species 2170 1 Paenibacillus bovis 1616788 0 species Paenibacillus donghaensis 1 3840 0 414771 0 1763538 species Paenibacillus crassostreae 923 1 1464 0 species 1602 1 Paenibacillus larvae 0 159743 species Paenibacillus terrae 1 1811 0 528191 Paenibacillus xylanexedens 1688 1 species 0 59893 Paenibacillus peoriae 1 1327 species 0 162209 Paenibacillus naphthalenovorans 1719 1 species 189426 0 1 1631 Paenibacillus odorifer species 1462996 0 1 2698 Paenibacillus yonginensis species species Paenibacillus swuensis 1 1295 0 1178515 1 55080 0 4 4752 Brevibacillus genus 101 1393 0 1861 1 Brevibacillus brevis species species Brevibacillus laterosporus 1 1711 0 1465 54913 0 species 1 1079 Brevibacillus formosus Lactobacillales 313274 164 4087 order 0 186826 1 1 81852 0 19 37324 Enterococcaceae family 97 1 2737 0 genus 21 1383 3 Vagococcus Vagococcus teuberi 1 747 species 0 519472 Vagococcus penaei 1 615 species 0 633807 0 33969 1 758 genus species Melissococcus plutonius 1 758 0 33970 genus 1682 12 33636 Enterococcus 1350 1 0 Enterococcus mundtii 1006 1 species 0 53346 species 1064 1 Enterococcus durans 53345 0 no rank 3 2386 2608891 0 0 2060306 species Enterococcus sp. FDAARGOS_163 739 1 0 2057791 Enterococcus sp. CR-Ec1 727 1 species 0 2060307 species Enterococcus sp. FDAARGOS_375 1 920 417368 0 812 1 Enterococcus thailandicus species 0 37734 species Enterococcus casseliflavus 1 676 0 1352 species Enterococcus faecium 1 18264 1351 0 1 5653 Enterococcus faecalis species 1058 1 Enterococcus hirae species 1354 0 2005703 0 species 1 1035 Enterococcus wangshanyuanii 0 1 51668 6 genus Tetragenococcus 2 1450 0 51669 species Tetragenococcus halophilus 1 1444 3726 family Streptococcaceae 49 198806 0 1 1300 3825 genus Streptococcus 43 185615 0 1 1301 0 2608887 7 17406 no rank 0 1839799 species Streptococcus sp. FDAARGOS_192 4305 1 species Streptococcus sp. I-P16 1 4127 0 1156433 0 1902136 species Streptococcus sp. NPS 308 712 1 1319 0 species 1 603 Streptococcus sp. 'group B' Streptococcus sp. A12 1 2154 species 0 1759399 species 1729 1 Streptococcus sp. oral taxon 431 712633 0 species 3776 1 Streptococcus sp. I-G2 1156431 0 45634 0 1 1290 Streptococcus cristatus species 0 82348 species Streptococcus pluranimalium 444 1 1305 0 1001 1 Streptococcus sanguinis species 1825069 0 1 636 Streptococcus marmotae species 1811193 0 species 1262 1 Streptococcus pantholopis 0 197614 species Streptococcus pasteurianus 3933 1 Streptococcus halotolerans 1 783 species 0 1814128 0 257758 species Streptococcus pseudopneumoniae 1 741 1 2360 Streptococcus pyogenes species 1314 0 1335 0 species 2421 1 Streptococcus equinus 1888195 0 1 566 Streptococcus himalayensis species 59310 0 species 679 1 Streptococcus macedonicus species 1 1983 Streptococcus gallolyticus 315405 0 0 28037 species Streptococcus mitis 2844 1 Streptococcus parauberis 1 819 species 0 1348 1 5075 Streptococcus infantarius species 102684 0 species 1 650 Streptococcus uberis 1349 0 species Streptococcus iniae 1 1480 0 1346 species Streptococcus lutetiensis 4652 1 0 150055 0 1309 Streptococcus mutans 1 1485 species 0 1307 species Streptococcus suis 1 23049 0 1304 species Streptococcus salivarius 17711 1 671232 0 3 45172 species group 1328 0 1 31426 Streptococcus anginosus species species 11937 1 Streptococcus constellatus 76860 0 species 1 1809 Streptococcus intermedius 1338 0 species Streptococcus gordonii 1 2267 0 1302 3209 1 Streptococcus acidominimus species 1326 0 Streptococcus thermophilus 1 2830 species 0 1308 1313 0 species 1 1952 Streptococcus pneumoniae 0 1303 species Streptococcus oralis 1 2592 species 19116 1 Streptococcus parasanguinis 1318 0 400065 0 671 1 Streptococcus merionis species 1311 0 8074 1 Streptococcus agalactiae species species group 2 2637 119603 0 1334 0 species 1 804 Streptococcus dysgalactiae 1336 0 1 1833 Streptococcus equi species Lactococcus 9465 5 24 genus 0 1 1357 0 1366 species Lactococcus raffinolactis 2867 1 0 1364 Lactococcus piscium 851 1 species Lactococcus garvieae 1 1132 species 0 1363 0 1358 species Lactococcus lactis 1 4591 0 263855 530 1 no rank species 530 1 Lactobacillales bacterium 1993866 0 566 family Lactobacillaceae 50344 58 0 33958 1 1 1850 genus 0 2767876 1603 0 1850 1 Lactobacillus amylophilus species 1 343 genus 2767877 0 Lactobacillus kunkeei 343 1 species 0 148814 genus 2 1176 2767889 0 Lactobacillus coryniformis 1 767 species 0 1610 375175 0 1 409 Lactobacillus backii species 5443 4 genus 0 2767887 Lactobacillus ruminis 1 2379 species 0 1623 1 1638 Lactobacillus salivarius species 1624 0 0 89059 species Lactobacillus acidipiscis 741 1 0 1601 species Lactobacillus agilis 685 1 0 2767890 1 364 genus species Lactobacillus hokkaidonensis 364 1 0 1193095 genus 708 1 2767892 0 240427 0 708 1 Lactobacillus paracollinoides species 2767886 0 genus 3 2089 Lactobacillus koreensis 556 1 species 0 637971 267363 0 species 701 1 Lactobacillus zymae 0 1580 Lactobacillus brevis 1 832 species genus 3245 3 2742598 0 1613 0 826 1 Lactobacillus fermentum species 0 97478 Lactobacillus mucosae 1170 1 species species Lactobacillus reuteri 1 1249 0 1598 genus 1645 3 2767893 0 0 1581 species Lactobacillus buchneri 1 617 1138822 0 species 1 546 Lactobacillus curieae species 1 482 Lactobacillus parabuchneri 152331 0 genus 3 4179 0 2759736 1597 0 species 1271 1 Lactobacillus paracasei 0 47715 Lactobacillus rhamnosus 1 1145 species 1582 0 species 1763 1 Lactobacillus casei genus 3 2097 0 2767842 0 1590 species Lactobacillus plantarum 1 1160 60520 0 1 329 Lactobacillus paraplantarum species 0 1589 species Lactobacillus pentosus 608 1 genus 1040 16 18426 Lactobacillus 1 1578 0 species 1 1186 Lactobacillus gasseri 1596 0 0 1604 species Lactobacillus amylovorus 1 4507 0 52242 species Lactobacillus gallinarum 1128 1 1584 0 species 1 2908 Lactobacillus delbrueckii 0 2620435 no rank 1335 4 315 1 Lactobacillus sp. CBA3606 species 2099789 0 Lactobacillus sp. CBA3605 1 322 species 0 2099788 1545702 0 1 293 Lactobacillus sp. wkB8 species 0 2108362 species Lactobacillus sp. D1501 405 1 species 1 635 Lactobacillus kefiranofaciens 267818 0 0 33959 species Lactobacillus johnsonii 2369 1 109790 0 1 475 Lactobacillus jensenii species 1579 0 species 1 598 Lactobacillus acidophilus species Lactobacillus amylolyticus 1 531 0 83683 1600 0 species 1 536 Lactobacillus acetotolerans 1587 0 species 1178 1 Lactobacillus helveticus 2767881 0 genus 658 2 species 1 380 Lactobacillus lindneri 53444 0 0 1625 species Lactobacillus sanfranciscensis 278 1 6 3376 genus 2767879 0 392416 0 species 1 503 Lactobacillus crustorum species Lactobacillus heilongjiangensis 606 1 0 1074467 537 1 Lactobacillus alimentarius species 1602 0 species Lactobacillus farciminis 1 662 0 1612 1007676 0 1 553 Lactobacillus ginsenosidimutans species species 515 1 Lactobacillus allii 1847728 0 1253 1 0 2816 6 Pediococcus genus 16 0 114090 Pediococcus inopinatus 397 1 species species Pediococcus claussenii 1 516 0 187452 0 51663 Pediococcus damnosus 448 1 species 1255 0 species 1 753 Pediococcus pentosaceus species group 1 686 1670797 0 1254 0 species 1 686 Pediococcus acidilactici 2767885 0 1363 2 genus 823 1 Lactobacillus sakei species 1599 0 0 28038 Lactobacillus curvatus 540 1 species family 17 17 11574 Leuconostocaceae 81850 1 0 0 1 46255 Weissella 2000 6 10 genus 239 1 Weissella ceti species 759620 0 406 1 Weissella koreensis species 165096 0 0 1249 Weissella paramesenteroides 411 1 species species 1 594 Weissella cibaria 137591 0 species Weissella jogaejeotgali 340 1 0 1631871 genus 47 9051 9 Leuconostoc 1243 1 0 1 861 Leuconostoc mesenteroides species 1245 0 species 1 3042 Leuconostoc lactis 1246 0 381 1 no rank 0 2685106 381 1 Leuconostoc sp. C2 species 979982 0 468 1 Leuconostoc gelidum species 1244 0 1 3068 Leuconostoc garlicum species 255248 0 0 33964 Leuconostoc citreum 1 535 species 1 264 Leuconostoc carnosum species 1252 0 0 136609 Leuconostoc kimchii 1 385 species 0 46254 506 1 genus Oenococcus oeni 1 506 species 0 1247 186828 1 0 family 14 5345 11 Carnobacteriaceae 0 1 191769 11 genus Marinilactibacillus 2 971 no rank 960 1 2632303 0 960 1 Marinilactibacillus sp. 15R species 1911586 0 2965 5 Carnobacterium genus 25 1 2747 0 0 257487 2 1402 no rank 208596 0 species 724 1 Carnobacterium sp. 17-4 0 1564681 species Carnobacterium sp. CP1 678 1 species 1 667 Carnobacterium inhibens 147709 0 2751 0 1 871 Carnobacterium maltaromaticum species 1 1470540 0 genus 6 1395 3 Jeotgalibaca Jeotgalibaca dankookensis 1 554 species 0 708126 no rank 1 835 2621505 0 1903686 0 835 1 Jeotgalibaca sp. PTS2502 species 1 186827 0 8 5264 Aerococcaceae family 7 1375 1 0 genus 188 5257 7 Aerococcus species 1006 1 Aerococcus sanguinicola 119206 0 species 1032 1 Aerococcus christensenii 87541 0 0 1377 species Aerococcus viridans 1 758 Aerococcus urinae 1 892 species 0 1376 species Aerococcus urinaehominis 1 678 0 128944 51665 0 species 1 703 Aerococcus urinaeequi 1 1737404 0 class 6 19 20915 Tissierellia 1737407 0 834 2 no rank 0 1582879 1 Ezakiella 2 834 20 genus Ezakiella massiliensis 1 814 species 0 1852374 1 1737405 0 20075 16 Tissierellales order 589 1150 3 Gottschalkiaceae family 3 1 2042895 0 0 1 1505664 Gottschalkia 2 1147 4 genus Gottschalkia acidurici 1143 1 species 0 1556 0 1 1570339 Peptoniphilaceae 18336 12 2683 family genus 6 2004 3 Anaerococcus 165779 1 0 species Anaerococcus prevotii 1 1092 0 33034 0 1870984 Anaerococcus mediterraneensis 906 1 species 1909 2 Finegoldia genus 29 1 150022 0 Finegoldia magna 1880 1 species 0 1260 0 543311 1 36 genus Parvimonas 2591 2 species 2555 1 Parvimonas micra 33033 0 0 162289 1 5 genus Peptoniphilus 1478 2 2637196 0 1473 1 no rank 0 1912856 Peptoniphilus sp. ING2-D1G 1473 1 species 10 genus Murdochiella 7671 2 0 1 1161127 species Murdochiella vaginalis 1 7661 0 1852373 4 class Erysipelotrichia 31892 11 0 526524 1 1 526525 0 10 31888 Erysipelotrichales order 99 0 1 128827 Erysipelotrichaceae 9 31789 328 family 1 1647 0 2936 3 Erysipelothrix genus 58 species Erysipelothrix larvae 1240 1 0 1514105 0 1648 species Erysipelothrix rhusiopathiae 1 1638 2 8657 Faecalibaculum genus 47 1729679 1 0 1702221 0 species 8610 1 Faecalibaculum rodentium 544447 0 15069 1 no rank species Erysipelotrichaceae bacterium I46 15069 1 0 1834207 0 191303 1 21 genus Turicibacter 2 4799 no rank 1 4778 0 2638206 species Turicibacter sp. H121 1 4778 0 1712675 1676648 1 0 5 2484 Limnochordia class 27 Limnochordales 4 2457 59 order 0 1 1676649 1676650 1 0 family 27 2398 3 Limnochordaceae 62 genus Limnochorda 2371 2 0 1676651 1 0 1555112 Limnochorda pilosa 2309 1 species Negativicutes 31 1261498 151 class 0 1 909932 96 order Selenomonadales 37358 14 0 909929 1 0 1 1843490 6 family Sporomusaceae 4 3425 0 1 365348 49 genus Pelosinus 3 3419 1 1602 no rank 0 2629460 1602 1 Pelosinus sp. UFO1 species 484770 0 0 365349 Pelosinus fermentans 1 1768 species 0 1843491 1 228 family Selenomonadaceae 33837 9 30644 6 Selenomonas genus 276 1 970 0 species Selenomonas ruminantium 1 9287 0 971 3 14191 no rank 2637378 0 species 5024 1 Selenomonas sp. oral taxon 136 713030 0 species 1 4590 Selenomonas sp. oral taxon 920 1884263 0 0 712538 Selenomonas sp. oral taxon 478 4577 1 species 69823 0 species 6890 1 Selenomonas sputigena 2 genus Megamonas 2965 2 0 158846 1 158847 0 species 2963 1 Megamonas hypermegale 0 1 1843489 Veillonellales 11 1173013 1527 order 1171486 10 Veillonellaceae family 1177 1 31977 0 421 genus Megasphaera 2 1137894 0 1 906 0 907 Megasphaera elsdenii 1137473 1 species Negativicoccus 4479 2 14 genus 0 1 909928 1702287 0 species 1 4465 Negativicoccus massiliensis 1 39948 0 2 11677 Dialister genus 67 species 11610 1 Dialister pneumosintes 39950 0 0 29465 1 42 genus Veillonella 3 16259 Veillonella rodentium 1 3544 species 0 248315 0 29466 Veillonella parvula 12673 1 species 1 1843488 0 5 50976 Acidaminococcales order 58 909930 1 0 family 49 4 50918 Acidaminococcaceae 904 1 0 50869 3 Acidaminococcus genus 128 0 905 species Acidaminococcus fermentans 10111 1 species Acidaminococcus intestini 40630 1 0 187327 no rank 1970 2 33974 0 0 1930845 1 49 genus Ndongobacter 1970 2 1 1921 Ndongobacter massiliensis species 1871025 0 186801 1 0 class 452 222 15306135 Clostridia 14587 order Clostridiales 165 15272552 0 186802 1 1 541000 0 family 702 11666880 13 Ruminococcaceae no rank 16673 1 0 2305133 Ruminococcaceae bacterium CPB6 1 16673 species 0 1572656 11468936 2 Faecalibacterium genus 1091 216851 1 0 0 853 species Faecalibacterium prausnitzii 1 11467845 6247 1 no rank 552397 0 1 6247 [Clostridium] cellulosi species 29343 0 0 1890281 genus Herbivorax 1 2 20193 2 Ethanoligenens genus 23 253238 1 0 253239 0 1 20170 Ethanoligenens harbinense species 43056 3 Ruminococcus genus 184 1263 1 0 species 25822 1 Ruminococcus bicirculans 1160721 0 0 1264 species Ruminococcus albus 17050 1 2 111071 Flavonifractor genus 175 946234 1 0 0 292800 species Flavonifractor plautii 1 110896 0 2304686 family 70095 12 2305130 0 1 43691 no rank species 1 43691 Ruminiclostridium sp. KB18 1834198 0 2304692 0 8840 3 genus 1 2075 Herbivorax saccincola species 1677857 0 288965 0 species 3475 1 [Clostridium] clariflavum 3290 1 Ruminiclostridium thermocellum species 1515 0 0 1 236752 Fastidiosipila 1275 2 10 genus Fastidiosipila sanguinis 1265 1 species 0 236753 2304693 0 genus 1 3637 84032 0 1 3637 [Clostridium] thermosuccinogenes species 738 genus Ruminiclostridium 5265 2 0 1508657 1 1521 0 1 4527 [Clostridium] cellulolyticum species 25 genus Mageeibacillus 3715 2 0 1 1637257 species Mageeibacillus indolicus 3690 1 0 884684 genus 3672 1 2304691 0 species [Clostridium] stercorarium 3672 1 0 1510 3 31123 Oscillospiraceae family 7 1 216572 0 2 31116 Oscillibacter genus 75 1 459786 0 351091 0 species 31041 1 Oscillibacter valericigenes family 619 41 127233 Clostridiaceae 31979 1 0 Candidatus Arthromitus 2726 4 75 genus 0 49082 1 2638829 0 2651 3 no rank Candidatus Arthromitus sp. SFB-mouse 1 756 species 0 49118 0 1041504 Candidatus Arthromitus sp. SFB-rat-Yit 1142 1 species 1508644 0 1 753 Candidatus Arthromitus sp. SFB-mouse-NL species Alkaliphilus 3 3852 15 genus 0 1 114627 0 208226 species Alkaliphilus metalliredigens 1 2364 461876 0 1 1473 Alkaliphilus oremlandii species Geosporobacter 4511 2 59 genus 0 390805 1 1424294 0 species 4452 1 Geosporobacter ferrireducens Clostridium 115214 30 936 genus 0 1 1485 species Clostridium cellulovorans 1 2699 0 1493 Clostridium beijerinckii 1 4450 species 0 1520 2389 1 Clostridium argentinense species 29341 0 species 1762 1 Clostridium chauvoei 46867 0 Clostridium carboxidivorans 1 2332 species 0 217159 0 1497 Clostridium formicaceticum 1 2279 species species 1 3935 Clostridium perfringens 1502 0 0 36745 Clostridium saccharoperbutylacetonicum 3462 1 species 34696 2 no rank 0 2614128 0 1042156 species Clostridium sp. SY8519 30880 1 755731 0 species 1 3816 Clostridium sp. BNL1100 species 1754 1 Clostridium estertheticum 238834 0 1494 0 species 1967 1 Clostridium cochlearium 1513 0 3665 1 Clostridium tetani species Clostridium butyricum 1 4048 species 0 1492 0 394958 species Clostridium taeniosporum 1 2158 species Clostridium novyi 1447 1 0 1542 Clostridium scatologenes 2343 1 species 0 1548 species 3045 1 Clostridium saccharobutylicum 169679 0 Clostridium baratii 1 3193 species 0 1561 1509 0 species 1 1744 Clostridium sporogenes species 1 1786 Clostridium tyrobutyricum 1519 0 species Clostridium acetobutylicum 1997 1 0 1488 0 84022 species Clostridium aceticum 2013 1 1501 0 3955 1 Clostridium pasteurianum species 0 1534 Clostridium kluyveri 3609 1 species Clostridium autoethanogenum 2222 1 species 0 84023 species 2510 1 Clostridium bornimense 1216932 0 Clostridium botulinum 10713 1 species 0 1491 Clostridium ljungdahlii 2105 1 species 0 1538 genus 1 311 Mordavella 1981033 0 1 186804 0 family 424 166581 12 Peptostreptococcaceae 157179 2 Clostridioides genus 398 1 1870884 0 species Clostridioides difficile 1 156781 0 1496 0 1481960 1 Peptoclostridium 2 2279 5 genus species Peptoclostridium acidaminophilum 2274 1 0 1731 1411023 0 no rank 1206 1 species 1206 1 Peptostreptococcaceae bacterium oral taxon 929 2081703 0 0 44259 1 34 genus Filifactor 2 1663 Filifactor alocis 1 1629 species 0 143361 genus 12 1746 2 Acetoanaerobium 1 186831 0 species Acetoanaerobium sticklandii 1 1734 0 1511 genus 2 2084 2 Paeniclostridium 1849828 1 0 1505 0 1 2082 Paeniclostridium sordellii species 2107 family Lachnospiraceae 27 2877448 0 186803 1 572511 1 0 genus 172 3 189918 Blautia 2648079 0 1 49348 no rank species 49348 1 Blautia sp. YL58 1796616 0 species Blautia hansenii 140398 1 0 1322 0 2719313 genus 228962 1 0 208479 [Clostridium] bolteae 1 228962 species genus 722 4 171941 Lachnoclostridium 1 1506553 0 0 1871021 Lachnoclostridium phocaeense 90332 1 species 66219 0 species 12236 1 Lachnoclostridium phytofermentans 2608895 0 no rank 68651 1 species Lachnoclostridium sp. YL32 68651 1 0 1834196 1 2039240 0 2 6163 Anaerotignum genus 13 28446 0 species 1 6150 Anaerotignum propionicum Roseburia 488921 2 51 genus 0 841 1 301301 0 488870 1 Roseburia hominis species 3 genus Cellulosilyticum 5187 2 0 1 698776 0 29360 Cellulosilyticum lentocellum 1 5184 species Anaerostipes 2 262161 144 genus 0 207244 1 0 649756 species Anaerostipes hadrus 1 262017 0 2569097 genus 1 183913 39488 0 1 183913 [Eubacterium] hallii species 96459 1 genus 2719231 0 species 96459 1 [Clostridium] saccharolyticum 84030 0 0 28050 1 847863 genus 39485 0 species 847863 1 [Eubacterium] eligens 47 genus Butyrivibrio 3 29781 0 1 830 species 1 15622 Butyrivibrio proteoclasticus 43305 0 185008 0 species 1 14112 Butyrivibrio hungatei no rank 2 354615 186928 0 0 712991 Lachnospiraceae bacterium oral taxon 500 34500 1 species 39491 0 species 320115 1 [Eubacterium] rectale 0 1 1663717 Herbinix 9457 2 7 genus 1 9450 Herbinix luporum species 1679721 0 5 24590 Eubacteriaceae family 34 186806 1 0 Eubacterium 2 22358 1713 genus 0 1730 1 species Eubacterium limosum 1 20645 0 1736 0 1 33951 12 genus Acetobacterium 2 2198 species Acetobacterium woodii 2186 1 0 33952 31984 1 0 family 25 3 4146 Heliobacteriaceae Heliobacterium 2 4121 167 genus 0 1 2697 35701 0 species 3954 1 Heliobacterium modesticaldum Peptococcaceae 27 40988 217 family 0 186807 1 2 3741 Dehalobacterium genus 5 1 51514 0 51515 0 3736 1 Dehalobacterium formicoaceticum species 157 genus Desulfotomaculum 6756 5 0 1 1562 Desulfotomaculum reducens 926 1 species 0 59610 0 1564 Desulfotomaculum ruminis 1 2880 species species Desulfotomaculum nigrificans 1221 1 0 1565 1833852 0 1 1572 Desulfotomaculum ferrireducens species 0 79206 1 Desulfosporosinus 4 4774 167 genus 1563 0 1 1423 Desulfosporosinus orientis species 79209 0 species 1 1632 Desulfosporosinus meridiei 885581 0 species 1 1552 Desulfosporosinus acidiphilus 2282742 0 1318 1 genus 58138 0 1318 1 Desulfotomaculum acetoxidans species genus 103 5 8707 Desulfitobacterium 1 36853 0 0 36854 species Desulfitobacterium dehalogenans 1803 1 species Desulfitobacterium hafniense 3429 1 0 49338 233055 0 1 1677 Desulfitobacterium dichloroeliminans species species 1695 1 Desulfitobacterium metallireducens 142877 0 471826 1 0 genus 17 1802 2 Candidatus Desulforudis 0 471827 species Candidatus Desulforudis audaxviator 1785 1 2195 1 genus 2282740 0 Desulfotomaculum gibsoniae 2195 1 species 0 102134 0 56112 1 Dehalobacter 4 8068 42 genus 0 55583 Dehalobacter restrictus 1 2647 species 0 2635733 5379 2 no rank Dehalobacter sp. DCA 2328 1 species 0 1147129 1131462 0 species 3051 1 Dehalobacter sp. CF 0 51196 genus 2063 1 2063 1 Syntrophobotulus glycolicus species 51197 0 1 1347 genus 278993 0 0 863643 Thermincola potens 1 1347 species 0 538999 no rank 10 199864 genus 1 97994 0 2717089 0 2086584 Mordavella sp. Marseille-P3756 1 97994 species Clostridiales Family XVII. Incertae Sedis 3 3065 19 family 0 1 539000 0 1 73918 21 genus Thermaerobacter 2 3046 73919 0 1 3025 Thermaerobacter marianensis species 588 genus Intestinimonas 2 90989 0 1392389 1 species Intestinimonas butyriciproducens 90401 1 0 1297617 7816 4 Clostridiales Family XIII. Incertae Sedis family 31 543314 1 0 0 143393 species [Eubacterium] sulci 1 4368 1 86331 0 genus 37 3417 2 Mogibacterium 114527 0 species 3380 1 Mogibacterium diversum family 17 3 42943 Christensenellaceae 990719 1 0 0 1 990721 455 genus Christensenella 2 42926 species 42471 1 Christensenella massiliensis 1805714 0 0 68298 1 2 family Syntrophomonadaceae 5 1423 2 860 Syntrophomonas genus 1 1 862 0 0 863 Syntrophomonas wolfei 859 1 species 3 genus Syntrophothermus 561 2 0 1 129001 species 558 1 Syntrophothermus lipocalidus 86170 0 0 543349 1 Symbiobacteriaceae 3 4651 21 family genus 25 4630 2 Symbiobacterium 2733 1 0 4605 1 Symbiobacterium thermophilum species 2734 0 order 39 37 25674 Thermoanaerobacterales 68295 1 0 2 269 family 227387 0 2 269 Thermodesulfobium genus 1 1 227388 0 0 184064 species Thermodesulfobium narugense 268 1 0 1 543371 65 family Thermoanaerobacterales Family III. Incertae Sedis 13 10714 0 44000 1 179 genus Caldicellulosiruptor 7019 9 species Caldicellulosiruptor bescii 875 1 0 31899 55205 0 1 903 Caldicellulosiruptor owensensis species 0 52766 Caldicellulosiruptor lactoaceticus 764 1 species 413889 0 species 1 854 Caldicellulosiruptor kronotskyensis 938 1 Caldicellulosiruptor obsidiansis species 717609 0 52765 0 1 751 Caldicellulosiruptor kristjanssonii species 0 44001 Caldicellulosiruptor saccharolyticus 1 810 species 413888 0 945 1 Caldicellulosiruptor hydrothermalis species 0 28895 1 23 genus Thermoanaerobacterium 3630 3 Thermoanaerobacterium xylanolyticum 1496 1 species 0 29329 0 1517 species Thermoanaerobacterium thermosaccharolyticum 2111 1 48 family Thermoanaerobacteraceae 13239 19 0 186814 1 276 genus Thermoanaerobacter 9 6717 0 1 1754 species Thermoanaerobacter italicus 1 796 0 108150 0 496866 species Thermoanaerobacter pseudethanolicus 1 865 0 46354 species Thermoanaerobacter wiegelii 1 775 865 1 Thermoanaerobacter brockii species 29323 0 species Thermoanaerobacter mathranii 693 1 0 583357 no rank 2 1721 2636821 0 0 399726 species Thermoanaerobacter sp. X514 1 833 1 888 Thermoanaerobacter sp. X513 species 573062 0 726 1 Thermoanaerobacter kivui species 2325 0 genus 3 1056 2 Caldanaerobacter 249529 1 0 0 911092 species Caldanaerobacter subterraneus 1053 1 genus 1 979 140458 0 0 85874 species Thermacetogenium phaeum 979 1 0 42857 4 3239 no rank 1 genus Ammonifex 1150 2 0 1 42837 0 42838 Ammonifex degensii 1149 1 species 2089 2 Moorella genus 11 1 44260 0 0 1525 Moorella thermoacetica 1 2078 species 0 129957 1 Carboxydothermus 1200 2 1 genus 129958 0 1199 1 Carboxydothermus hydrogenoformans species family 30 1413 2 Thermoanaerobacterales Family IV. Incertae Sedis 543372 1 0 0 252965 genus 1383 1 1 1383 Mahella australiensis species 252966 0 6 order Natranaerobiales 1035 4 0 485256 1 1 485255 0 3 1029 Natranaerobiaceae family 7 genus 90 2 1022 Natranaerobius 1 375928 0 0 375929 species Natranaerobius thermophilus 932 1 2770089 0 order 2276 3 1 1287 family 2770092 0 genus 1 1287 0 499228 499229 0 1287 1 Tepidanaerobacter acetatoxydans species 2 989 family 0 2770093 0 1 291988 Thermosediminibacter 2 989 4 genus 0 291990 species Thermosediminibacter oceani 1 985 2 order Halanaerobiales 4146 12 0 1 53433 family 8 1627 5 Halobacteroidaceae 53434 1 0 0 1 28186 Acetohalobium 2 1076 4 genus species Acetohalobium arabaticum 1 1072 0 28187 0 1 42417 Halobacteroides 2 543 9 genus 0 42422 Halobacteroides halobius 1 534 species Halanaerobiaceae 2517 6 6 family 0 1 972 1 2330 0 3 1790 Halanaerobium genus 33 959 1 Halanaerobium hydrogeniformans species 656519 0 Halanaerobium praevalens 1 798 species 0 2331 Halothermothrix 721 2 6 genus 0 32636 1 species 1 715 Halothermothrix orenii 31909 0 68297 0 5 754 phylum 754 5 Dictyoglomia class 4 1 203486 0 order 7 750 4 Dictyoglomales 1 203487 0 743 3 family 0 203488 0 1 13 2 genus Dictyoglomus 3 743 0 513050 Dictyoglomus turgidum 367 1 species 374 1 Dictyoglomus thermophilum species 14 0 0 2323 3 619 no rank 3 619 clade 0 1783234 95901 0 clade 2 290 2497643 0 2 290 class 2497644 0 2 290 order family 2 290 2497645 0 290 2 Candidatus Babela genus 12 1551504 1 0 0 673862 species Candidatus Babela massiliensis 1 278 0 95818 1 329 phylum 1895827 0 1 329 no rank 2056494 0 species 1 329 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 phylum 58 52485 203691 0 0 1 203692 150 class Spirochaetia 52485 58 7 6222 Brachyspirales order 2 1 1643686 0 family 40 6220 6 Brachyspiraceae 1 143786 0 29521 1 0 6180 5 Brachyspira genus 36 species Brachyspira intermedia 835 1 0 84377 0 52584 species Brachyspira pilosicoli 1 3264 species 1260 1 Brachyspira hyodysenteriae 159 0 84378 0 1 785 Brachyspira murdochii species 0 1643688 9 3119 order 1 170 0 family 3 9 3119 Leptospiraceae genus 1 2 558 Turneriella 338321 1 0 1 557 Turneriella parva species 29510 0 0 171 1 Leptospira 2558 6 11 genus 0 28452 Leptospira alstonii 1 447 species 172 0 259 1 Leptospira biflexa species 0 174 Leptospira borgpetersenii 515 1 species 0 173 species Leptospira interrogans 1 610 0 28183 species Leptospira santarosai 1 716 order 652 42994 41 Spirochaetales 1 136 0 10 family Borreliaceae 2660 17 0 1643685 1 1 64895 0 genus 98 1386 8 Borreliella 0 64897 species Borreliella bissettii 127 1 0 1674146 species Borrelia mayonii 220 1 0 664662 species Borreliella bavariensis 135 1 species Borreliella burgdorferi 175 1 0 139 species 111 1 Borreliella valaisiana 62088 0 0 29518 Borreliella afzelii 1 151 species 29519 0 species 369 1 Borreliella garinii 8 1264 Borrelia genus 33 1 138 0 species 139 1 Borrelia hermsii 140 0 0 141 Borrelia parkeri 145 1 species 1 318 Borrelia miyamotoi species 47466 0 40834 0 species 1 158 Borrelia duttonii species 1 128 Borrelia anserina 143 0 142 0 species 169 1 Borrelia turicatae 0 44449 species Borrelia recurrentis 1 174 Spirochaetaceae 23 39682 713 family 0 1 137 0 1 157 408 genus Treponema 12 28492 Treponema pallidum 1 100 species 0 160 53435 0 species 96 1 Treponema paraluiscuniculi species Treponema caldarium 730 1 0 215591 species Treponema succinifaciens 1 7443 0 167 species 1 567 Treponema pedis 409322 0 0 2638727 5141 1 no rank 0 1539298 species Treponema sp. OMZ 838 5141 1 88058 0 1719 1 Treponema primitia species species 1 4911 Treponema putidum 221027 0 81028 0 2459 1 Treponema brennaborense species 0 150829 Treponema azotonutricium 2005 1 species 158 0 1 2913 Treponema denticola species Sphaerochaeta 4153 4 7 genus 0 1 399320 species 1 1245 Sphaerochaeta coccoides 273376 0 1 1848 Sphaerochaeta globosa species 1131703 0 species 1 1053 Sphaerochaeta pleomorpha 1131707 0 28 genus Spirochaeta 3 3022 0 146 1 species Spirochaeta africana 1189 1 0 46355 1 1805 Spirochaeta thermophila species 154 0 0 1616789 1 3 genus Salinispira 2 1075 1307761 0 species 1 1072 Salinispira pacifica 0 1911556 genus 1 2227 55206 0 2227 1 Sediminispirochaeta smaragdinae species 200783 0 phylum 4020 26 1 187857 0 26 4020 Aquificae class 9 1 1485951 0 5 678 Desulfurobacteriales order 1 0 1 558314 4 family Desulfurobacteriaceae 4 677 genus 3 2 275 Thermovibrio 1 171868 0 Thermovibrio ammonificans 1 272 species 0 228745 genus 398 1 0 64159 0 64160 Desulfurobacterium thermolithotrophum 1 398 species 0 1 32069 Aquificales 3333 20 2 order Hydrogenothermaceae 5 991 2 family 0 1 224027 182899 0 1 322 genus 0 309805 Persephonella marina 1 322 species 0 212790 1 Sulfurihydrogenibium 667 3 4 genus 0 309806 species Sulfurihydrogenibium azorense 233 1 no rank 1 430 2619248 0 Sulfurihydrogenibium sp. YO3AOP1 430 1 species 0 436114 90150 0 no rank 1 287 0 412592 1 287 genus 0 412593 Thermosulfidibacter takaii 287 1 species 0 1 64898 5 family Aquificaceae 13 2053 1 168657 0 1449 6 Hydrogenobaculum genus 26 5 1423 no rank 2622382 0 547146 0 species 304 1 Hydrogenobaculum sp. SN 1 304 Hydrogenobaculum sp. 3684 species 547143 0 547144 0 1 304 Hydrogenobaculum sp. HO species 1 304 Hydrogenobaculum sp. SHO species 547145 0 380749 0 207 1 Hydrogenobaculum sp. Y04AAS1 species genus 9 2 189 Aquifex 1 2713 0 63363 0 1 180 Aquifex aeolicus species 0 939 genus 1 176 species Hydrogenobacter thermophilus 1 176 0 940 1 75905 0 genus 1 3 234 Thermocrinis 0 136094 species Thermocrinis albus 1 114 75906 0 119 1 Thermocrinis ruber species 0 200938 5 2180 phylum 118001 1 0 class 12 2180 5 Chrysiogenetes 73 order Chrysiogenales 4 2168 0 189769 1 0 1 189770 11 family Chrysiogenaceae 2095 3 0 393029 1 Desulfurispirillum 2 2084 3 genus 936456 0 species 1 2081 Desulfurispirillum indicum phylum 11 6989 0 508458 38 class Synergistia 11 6989 0 649775 1 649776 1 0 order 31 10 6951 Synergistales 0 649777 1 Synergistaceae 9 6920 99 family 539 1 genus 0 81466 0 81468 Aminobacterium colombiense 1 539 species 17 genus Cloacibacillus 4699 2 0 1 508459 1197717 0 species 4682 1 Cloacibacillus porcorum 2 922 Thermanaerovibrio genus 18 1 81461 0 81462 0 species 904 1 Thermanaerovibrio acidaminovorans 49894 1 0 genus 5 326 2 Acetomicrobium species Acetomicrobium mobile 321 1 0 97477 336260 0 genus 335 1 0 336261 Thermovirga lienii 1 335 species phylum 22981 23 32066 0 class 28 22981 23 Fusobacteriia 1 203490 0 order 31 22 22953 Fusobacteriales 203491 1 0 0 1129771 1 86 family Leptotrichiaceae 9 7458 genus 698 1 34104 0 species Streptobacillus moniliformis 698 1 0 34105 genus 1416 1 32068 0 0 826 Sebaldella termitidis 1416 1 species genus 1 916 0 168808 species 1 916 Sneathia amnii 187101 0 1 32067 0 genus 4 5 4342 Leptotrichia no rank 3 3221 2633022 0 0 712368 species Leptotrichia sp. oral taxon 498 1 845 species Leptotrichia sp. oral taxon 847 1 1128 0 1785996 0 712357 Leptotrichia sp. oral taxon 212 1 1248 species 0 40542 species Leptotrichia buccalis 1 1117 family 35 12 15464 Fusobacteriaceae 1 203492 0 0 1 848 79 genus Fusobacterium 9 14429 0 850 Fusobacterium mortiferum 1 1320 species 0 851 Fusobacterium nucleatum 4050 1 species 0 1583098 Fusobacterium hwasookii 1 1144 species 1 864 Fusobacterium gonidiaformans species 849 0 859 0 species 659 1 Fusobacterium necrophorum 861 0 1 1405 Fusobacterium ulcerans species 860 0 species 1 2666 Fusobacterium periodonticum Fusobacterium varium 1 2242 species 0 856 1000 2 Ilyobacter genus 1 1 167639 0 167642 0 species 999 1 Ilyobacter polytropus 0 1 57723 Acidobacteria 12110 21 3 phylum 204432 1 0 17 10847 Acidobacteriia class 95 1 204433 0 8734 12 Acidobacteriales order 98 11 8636 Acidobacteriaceae family 181 204434 1 0 1 940557 0 2740 3 Granulicella genus 60 species 1 1325 Granulicella tundricola 940615 0 940614 0 1355 1 Granulicella mallensis species Candidatus Koribacter 2 1397 87 genus 0 658061 1 0 658062 Candidatus Koribacter versatilis 1 1310 species 24 genus Acidobacterium 2 1652 0 33973 1 species 1 1628 Acidobacterium capsulatum 33075 0 2666 3 Terriglobus genus 20 1 392733 0 Terriglobus roseus 1 1585 species 0 392734 1061 1 Terriglobus saanensis species 870903 0 order 100 2018 4 Solibacterales 1 332160 0 332161 1 0 1918 3 Solibacteraceae family 35 1 332162 0 1883 2 Candidatus Solibacter genus 28 0 332163 Candidatus Solibacter usitatus 1 1855 species 0 1562566 1 3 class Blastocatellia 3 1260 458032 1 0 genus 12 1257 2 Chloracidobacterium species Chloracidobacterium thermophilum 1245 1 0 458033 40117 0 5396 14 phylum 203693 1 0 5396 14 Nitrospira class 16 1 189778 0 order 51 13 5380 Nitrospirales 0 1 189779 42 family Nitrospiraceae 5329 12 genus 1 2 445 Thermodesulfovibrio 28261 1 0 0 28262 species Thermodesulfovibrio yellowstonii 1 444 1234 1 0 genus 45 3581 5 Nitrospira 42253 0 1283 1 Nitrospira moscoviensis species 1325564 0 1 785 Nitrospira japonica species 330214 0 species 1 661 Nitrospira defluvii 1 807 Candidatus Nitrospira inopinata species 1715989 0 genus 2 1261 4 Leptospirillum 179 1 0 391 1 species group 0 655606 species 1 391 Leptospirillum ferrooxidans 180 0 0 261386 472 1 species group 0 178606 Leptospirillum ferriphilum 472 1 species 0 261385 species group 1 396 1 396 Leptospirillum sp. Group II 'CF-1' species 1660083 0 200930 0 2246 9 phylum 7 class Deferribacteres 2246 9 0 68337 1 191393 1 0 2239 8 Deferribacterales order 3 191394 1 0 2236 7 Deferribacteraceae family 20 117999 0 genus 1 794 species Denitrovibrio acetiphilus 1 794 0 118000 413 1 genus 0 545865 species 1 413 Calditerrivibrio nitroreducens 477976 0 489 2 Flexistipes genus 6 1 2351 0 483 1 Flexistipes sinusarabici species 2352 0 520 2 Deferribacter genus 1 53572 1 0 Deferribacter desulfuricans 1 519 species 0 197162 1783270 0 369 8426164 clade phylum 8 4948 0 142182 1 219685 0 class 19 4948 8 Gemmatimonadetes 1 219686 0 4929 7 Gemmatimonadales order 119 219687 1 0 family 63 6 4810 Gemmatimonadaceae 1 173479 0 genus 16 2139 3 Gemmatimonas 173480 0 1 1091 Gemmatimonas aurantiaca species 1 1032 Gemmatimonas phototrophica species 1379270 0 13 genus Gemmatirosa 2 2608 0 1 1706036 Gemmatirosa kalamazoonesis 1 2595 species 0 861299 65842 0 phylum 2352 5 204430 1 0 5 2352 Fibrobacteria class 15 Fibrobacterales 4 2337 1 order 0 1 218872 2 family Fibrobacteraceae 2336 3 0 1 204431 Fibrobacter 2334 2 4 genus 0 1 832 0 833 Fibrobacter succinogenes 2330 1 species clade 354 8418414 68336 0 0 1134404 phylum 1659 7 1 795747 0 1659 7 Ignavibacteria class 5 1 795748 0 order 4 1654 6 Ignavibacteriales 0 795749 1 Ignavibacteriaceae 789 2 1 family genus 1 788 795750 0 0 591197 Ignavibacterium album 1 788 species 861 3 Melioribacteraceae family 1 1334117 1 0 0 1 1134403 9 genus Melioribacter 860 2 Melioribacter roseus 851 1 species 0 1134405 phylum 12688 22 1090 0 Chlorobia 22 12688 79 class 0 191410 1 131 order Chlorobiales 21 12609 0 191411 1 72 family Chlorobiaceae 20 12478 0 1 191412 7 genus Chloroherpeton 637 2 0 1 100715 species 630 1 Chloroherpeton thalassium 100716 0 5 2569 Prosthecochloris genus 6 1 1101 0 2632826 0 3 1969 no rank species Prosthecochloris sp. GSB1 900 1 0 281093 Prosthecochloris sp. CIB 2401 1 470 species 0 1868325 1974213 0 species 599 1 Prosthecochloris sp. HL-130-GSB 594 1 Prosthecochloris aestuarii species 1102 0 0 274493 4856 8 no rank Chlorobium 5 2803 10 genus 0 1 1091 1 1047 Chlorobium phaeobacteroides species 1096 0 1 343 Chlorobium chlorochromatii species 337090 0 species Chlorobium limicola 1 714 0 1092 species Chlorobium phaeovibrioides 689 1 0 1094 genus 3 3 2053 Pelodictyon 1099 1 0 species Pelodictyon phaeoclathratiforme 1 734 0 34090 species Pelodictyon luteolum 1 1316 0 1100 genus 51 4344 4 Chlorobaculum 1 256319 0 274537 0 species 1 1711 Chlorobaculum limnaeum 274539 0 species 1 1509 Chlorobaculum parvum 0 1097 species Chlorobaculum tepidum 1073 1 976 1 0 phylum 42 8404067 325 Bacteroidetes 44 class Flavobacteriia 84898 143 0 117743 1 84854 142 Flavobacteriales order 71 200644 1 0 no rank 197 3 0 313602 46 1 genus 0 1940138 46 1 Candidatus Walczuchella monophlebidarum species 1415657 0 0 1 336809 Candidatus Sulcia 151 2 7 genus 0 336810 species Candidatus Sulcia muelleri 1 144 1333713 0 534 2 family genus 18 534 2 Owenweeksia 1 267986 0 0 253245 Owenweeksia hongkongensis 516 1 species 0 1853230 1 Crocinitomicaceae 3 540 1 family 2 genus Fluviicola 2 539 0 1 332102 0 191579 species Fluviicola taffensis 537 1 family 32478 22 2762318 0 Elizabethkingia 6 5281 28 genus 0 308865 1 0 1117645 Elizabethkingia anophelis 1 1931 species 1756149 0 species 1 665 Elizabethkingia genomosp. 3 0 172045 species Elizabethkingia miricola 1121 1 0 1756150 species Elizabethkingia genomosp. 4 1 683 species Elizabethkingia meningoseptica 1 853 0 238 13 genus Riemerella 2 1222 0 1 34084 species Riemerella anatipestifer 1 1209 0 34085 0 28250 1 Ornithobacterium 17390 2 63 genus 17327 1 Ornithobacterium rhinotracheale species 28251 0 no rank 10 8243 0 2782232 1 1010 genus 0 2782228 Chryseobacterium taklimakanense 1 1010 species 0 536441 59732 1 0 genus 46 7233 9 Chryseobacterium 2560 3 no rank 2593645 0 0 2015076 species Chryseobacterium sp. T16E-39 1 1086 species Chryseobacterium sp. StRB126 825 1 0 878220 Chryseobacterium sp. IHB B 17019 1 649 species 0 1721091 species Chryseobacterium indologenes 1 1614 0 253 species 789 1 Chryseobacterium camelliae 1265445 0 species Chryseobacterium piperi 1 638 0 558152 0 1324352 species Chryseobacterium gallinarum 874 1 species 1 712 Chryseobacterium glaciei 1685010 0 1 1013 0 2 342 Weeksella genus 12 Weeksella virosa 330 1 species 0 1014 1 family Blattabacteriaceae 958 10 0 1 39782 1 34098 0 genus 52 9 957 Blattabacterium 0 1653831 Blattabacterium cuenoti 129 1 species species 1 136 Blattabacterium punctulatus 164514 0 no rank 640 6 2647581 0 Blattabacterium sp. (Blatta orientalis) 1 70 species 0 367806 species 66 1 Blattabacterium sp. (Periplaneta americana) 367488 0 0 624186 species Blattabacterium sp. (Blattella germanica) 169 1 Blattabacterium sp. (Nauphoeta cinerea) 97 1 species 0 1316444 Blattabacterium sp. (Blaberus giganteus) 1 116 species 0 1186051 species Blattabacterium sp. (Mastotermes darwiniensis) 122 1 0 39768 0 49546 1 1157 family Flavobacteriaceae 98 49926 0 1518147 genus 1 586 0 1790137 Wenyingzhuangia fucanilytica 1 586 species Maribacter 5 1880 2 genus 0 252356 1 1354 3 no rank 0 2615042 1 463 Maribacter sp. 1_2014MBL_MicDiv species 1644130 0 species Maribacter sp. T28 438 1 0 1836467 species 1 453 Maribacter sp. HTCC2170 313603 0 species 524 1 Maribacter cobaltidurans 1178778 0 377 1 genus 358023 0 1622118 0 species 377 1 Lutibacter profundi Tenacibaculum 1743 5 1 genus 0 1 104267 species Tenacibaculum todarodis 354 1 0 1850252 Tenacibaculum jejuense 533 1 species 0 584609 1 424 Tenacibaculum dicentrarchi species 669041 0 107401 0 species 1 431 Tenacibaculum maritimum 1 104264 0 4 1572 Cellulophaga genus 4 Cellulophaga baltica 1 501 species 0 76594 618 1 Cellulophaga lytica species 979 0 0 59600 Cellulophaga algicola 449 1 species 1 237 0 genus 21 5870 9 Flavobacterium species 1 590 Flavobacterium commune 1306519 0 1763534 0 species 396 1 Flavobacterium crassostreae 0 986 species Flavobacterium johnsoniae 1959 1 species 1 793 Flavobacterium columnare 996 0 Flavobacterium branchiophilum 428 1 species 0 55197 312277 0 species 495 1 Flavobacterium indicum Flavobacterium psychrophilum 482 1 species 0 96345 species 1 706 Flavobacterium gilvum 1492737 0 112040 0 1 634 genus 63186 0 species 1 634 Zobellia galactanivorans genus 2 438 225842 0 2 438 no rank 2644710 0 Formosa sp. Hel1_33_131 227 1 species 0 1336794 1 211 Formosa sp. Hel3_A1_48 species 1336795 0 0 1176327 genus 1 527 no rank 527 1 0 2636237 2094025 0 527 1 Aureitalea sp. RR4-38 species Seonamhaeicola 2 642 2 genus 0 1649495 1 0 2622645 no rank 640 1 1936081 0 1 640 Seonamhaeicola sp. S2-3 species 111500 0 1048 2 genus Muricauda lutaonensis 528 1 species 0 516051 520 1 Muricauda ruestringensis species 111501 0 1 76831 0 genus 34 2403 5 Myroides Myroides odoratimimus 1 964 species 0 76832 2 990 no rank 2642485 0 1 588 Myroides sp. A21 species 1583100 0 species 1 402 Myroides sp. ZB35 1458492 0 Myroides profundi 415 1 species 0 480520 393005 0 357 1 genus species Tamlana sp. UJ94 357 1 0 2069432 0 292691 1 Gramella 2154 5 17 genus 0 411153 species Gramella forsetii 509 1 2126553 0 species 663 1 Gramella sp. SH35 1486245 0 species 1 606 Gramella flava Gramella sp. LPB0144 359 1 species 0 1913577 480 1 genus 0 261827 480 1 Algibacter alginicilyticus species 1736674 0 83612 0 genus 1 395 species Psychroflexus torquis 1 395 0 57029 4 1227 Lacinutrix genus 5 1 291183 0 1486034 0 467 1 Lacinutrix venerupis species 0 2647285 no rank 755 2 species 423 1 Lacinutrix sp. 5H-3-7-4 983544 0 species 1 332 Lacinutrix sp. Bg11-31 2057808 0 1 326319 0 genus 3 965 4 Dokdonia 0 326320 Dokdonia donghaensis 328 1 species 634 2 no rank 2615033 0 species 1 274 Dokdonia sp. MED134 313590 0 983548 0 1 360 Dokdonia sp. 4H-3-7-5 species 0 1 363408 5 genus Nonlabens 5 1480 0 2615035 no rank 627 2 species Nonlabens sp. MIC269 253 1 0 1476901 0 2058134 Nonlabens sp. MB-3u-79 1 374 species 1 209 Nonlabens sediminis species 319236 0 Nonlabens dokdonensis 639 1 species 0 328515 286104 0 1013 2 genus 0 2615021 no rank 1013 2 species 1 628 Winogradskyella sp. J14-2 1936080 0 754409 0 species 385 1 Winogradskyella sp. PG-2 0 1204360 1 395 genus Siansivirga zeaxanthinifaciens 395 1 species 0 762954 153265 0 368 1 genus Aequorivita sublithincola 368 1 species 0 101385 0 216431 1 395 genus species 395 1 Croceibacter atlanticus 313588 0 1 569 genus 178469 0 0 616991 species Arenibacter algicola 569 1 2 1163 no rank 61432 0 625 1 Flavobacteriaceae bacterium 3519-10 species 531844 0 1150389 0 species 538 1 Flavobacteriaceae bacterium UJ101 2700084 0 543 1 genus Lutibacter sp. LPB0138 1 543 species 0 1850246 0 1209327 genus 1 533 Flavivirga eckloniae 533 1 species 0 1803846 143222 0 1 599 genus 1 599 no rank 0 2633436 Salegentibacter sp. T436 599 1 species 0 1729720 3 genus Polaribacter 2451 6 0 1 52959 0 1774273 species Polaribacter vadi 1 598 1347 3 no rank 196858 0 0 2058137 Polaribacter sp. ALD11 590 1 species 0 313598 Polaribacter sp. MED152 1 376 species 1529069 0 1 381 Polaribacter sp. BM10 species 503 1 Polaribacter reichenbachii species 996801 0 Robiginitalea 2 824 11 genus 0 1 252306 252307 0 1 813 Robiginitalea biformata species 0 336276 311 1 genus 2615019 0 no rank 311 1 species Olleya sp. Bg11-27 311 1 0 2058135 0 1 417127 Zunongwangia 673 2 3 genus 0 398743 species Zunongwangia profunda 670 1 0 1 1016 43 genus Capnocytophaga 15 13742 45243 0 1 459 Capnocytophaga haemolytica species 0 1848904 Capnocytophaga stomatis 482 1 species 1018 0 529 1 Capnocytophaga ochracea species species 625 1 Capnocytophaga canimorsus 28188 0 species Capnocytophaga cynodegmi 519 1 0 28189 0 1019 species Capnocytophaga sputigena 1 720 367 1 Capnocytophaga gingivalis species 1017 0 6 6091 no rank 0 2640652 Capnocytophaga sp. H2931 363 1 species 0 1945657 1 355 Capnocytophaga sp. H4358 species 1945658 0 1316596 0 3843 1 Capnocytophaga sp. oral taxon 878 species 1316593 0 species 502 1 Capnocytophaga sp. oral taxon 864 species Capnocytophaga sp. ChDC OS43 1 447 0 209053 1705617 0 species 581 1 Capnocytophaga sp. oral taxon 323 327575 0 1 3907 Capnocytophaga leadbetteri species genus 1 412 389486 0 412 1 no rank 2648869 0 1 412 Sediminicola sp. YIK13 species 1453352 0 family 1 2 148 Ichthyobacteriaceae 1755828 1 0 genus 147 1 0 1755829 242600 0 147 1 Ichthyobacterium seriolicida species family Cryomorphaceae 2 1 0 246874 1 1937959 0 class 5 1829 7 Saprospiria 6 1824 Saprospirales order 6 1936988 1 0 1937961 1 0 3 1294 Haliscomenobacteraceae family 1 genus 11 1293 2 Haliscomenobacter 1 2349 0 species Haliscomenobacter hydrossis 1282 1 0 2350 2 524 family 0 89374 1 1007 0 genus 4 524 2 Saprospira species Saprospira grandis 520 1 0 1008 0 1853228 1 Chitinophagia 7615 16 5 class 1853229 1 0 order 21 15 7610 Chitinophagales Chitinophagaceae 7589 14 47 family 0 1 563835 0 398041 1 Flavisolibacter 2 536 7 genus 529 1 Flavisolibacter tropicus species 1492898 0 2 genus Chitinophaga 2384 3 0 1 79328 Chitinophagaceae bacterium 13 1 761 species 0 2029983 species Chitinophaga pinensis 1621 1 0 79329 1 684 genus 1769012 0 0 2636138 no rank 1 684 species 1 684 Arachidicoccus sp. BS20 1850526 0 0 1 379899 11 genus Niabella 1726 3 species Niabella ginsenosidivorans 816 1 0 1176587 species Niabella soli 899 1 0 446683 Filimonas 1078 2 6 genus 0 649460 1 species Filimonas lacunae 1 1072 0 477680 0 354354 1 Niastella 1134 2 2 genus Niastella koreensis 1 1132 species 0 354356 0 1 768503 99 class Cytophagia 39008 57 38909 56 Cytophagales order 237 768507 1 0 Hymenobacteraceae 16 21449 93 family 0 1853232 1 genus 26 4 3040 Rufibacter 1 1379908 0 2639626 0 2 1948 no rank 0 1379909 Rufibacter sp. DG15C 929 1 species 1379910 0 1019 1 Rufibacter sp. DG31D species 512763 0 1066 1 Rufibacter tibetensis species genus 13 3 2195 Pontibacter 323449 1 0 0 388950 Pontibacter akesuensis 1369 1 species 0 400092 Pontibacter korlensis 813 1 species 1 89966 0 genus 133 8 16121 Hymenobacter 1446467 0 species 1 2196 Hymenobacter swuensis 0 2615202 5 11096 no rank 0 1484116 Hymenobacter sp. PAMC 26554 1 2174 species Hymenobacter sp. DG25A 1 1433 species 0 1385663 1468 1 Hymenobacter sp. DG25B species 1385664 0 species Hymenobacter sp. PAMC 26628 1 3272 0 1484118 1356852 0 2749 1 Hymenobacter sp. APR13 species 0 1411621 Hymenobacter sedentarius 1 2696 species family 496 2 2762301 0 1 869806 0 genus 16 2 496 Marivirga 1006 0 1 480 Marivirga tractuosa species 0 1 1853234 1 family Persicobacteraceae 1185 3 0 59740 1 3 genus Persicobacter 2 1184 2664020 0 no rank 1 1181 species Persicobacter sp. JZB09 1 1181 0 1085624 56 family Cytophagaceae 9491 16 0 1 89373 661 2 Leadbetterella genus 2 1 319458 0 0 316068 Leadbetterella byssophila 1 659 species 120831 1 0 genus 3 1458 2 Dyadobacter 0 94254 Dyadobacter fermentans 1455 1 species 1 107 0 genus 26 4722 6 Spirosoma species Spirosoma sp. HA7 1 962 0 2057025 species 955 1 Spirosoma rigui 564064 0 species Spirosoma radiotolerans 1 874 0 1379870 745 1 Spirosoma aerolatum species 1211326 0 1178516 0 species 1160 1 Spirosoma montaniterrae 861914 0 genus 1 789 2620963 0 789 1 no rank 789 1 Fibrella sp. ES10-3-2-2 species 1834519 0 0 1 105 Runella 2 1070 3 genus 1067 1 Runella slithyformis species 106 0 978 1 0 genus 20 735 2 Cytophaga species Cytophaga hutchinsonii 1 715 0 985 4 family Bernardetiaceae 3 645 0 1 1937968 3 genus Bernardetia 641 2 0 1937972 1 0 999 species Bernardetia litoralis 1 638 0 1501348 2 284 family 1 126 genus 273135 0 1 126 no rank 0 2641185 0 249402 species Cardinium endosymbiont of Encarsia pergandiella 126 1 1 158 genus 281119 0 281120 0 species 1 158 Candidatus Amoebophilus asiaticus 0 200667 1 Flammeovirgaceae 4 2206 3 family 1 genus Flammeovirga 2 970 0 1 59739 0 2637820 no rank 1 969 1 969 Flammeovirga sp. MY04 species 1191459 0 0 340671 no rank 1 1233 species Flammeovirgaceae bacterium 311 1 1233 0 1257021 1 563798 0 9 2916 Cyclobacteriaceae family 5 genus 2 736 2 Echinicola 1 390846 0 0 390884 species Echinicola vietnamensis 734 1 0 1 246875 Algoriphagus 2 522 3 genus 0 1727163 Algoriphagus sp. M8-2 519 1 species Cyclobacterium 1221 3 5 genus 0 68288 1 644 1 Cyclobacterium marinum species 104 0 0 320787 species Cyclobacterium amurskyense 572 1 232244 0 1 432 genus 0 232259 species Belliella baltica 1 432 1100069 1 0 order 136 7032 7 Bacteroidetes Order II. Incertae sedis 0 1 563843 Rhodothermaceae 6 6896 85 family 0 1 29548 Rhodothermus 3357 2 28 genus Rhodothermus marinus 3329 1 species 0 29549 0 1196022 2349 1 no rank 1779382 0 1 2349 Rhodothermaceae bacterium RA species 2 1105 Salinibacter genus 4 1 146918 0 0 146919 species Salinibacter ruber 1 1101 159 class Bacteroidia 8251397 71 0 200643 1 0 1 1970189 5 order Marinilabiliales 11 3874 1970190 0 family 2 468 1970191 1 0 468 2 Salinivirga genus 4 species 464 1 Salinivirga cyanobacteriivorans 1307839 0 1 family Marinifilaceae 948 2 0 1 1573805 0 2060722 947 1 genus 1717717 0 species 947 1 Marinifilaceae bacterium SPP2 1 558415 0 3 947 Marinilabiliaceae family 1 1193324 1 0 2 946 Alkalitalea genus 2 Alkalitalea saponilacus 944 1 species 0 889453 Prolixibacteraceae 3 1506 5 family 0 1 1471398 1501 2 Draconibacterium genus 2 1471399 1 0 1499 1 Draconibacterium orientale species 1168034 0 0 171549 1 1144 order Bacteroidales 8247364 59 185291 0 1 846 no rank species Bacteroidales bacterium CF 1 846 0 1400053 1 2005523 0 family 2 1300 2 Paludibacteraceae 1298 1 genus 346096 0 species Paludibacter propionicigenes 1 1298 0 185300 171550 1 0 family 55 79463 5 Rikenellaceae Mucinivorans 2 1584 5 genus 0 1 1611681 0 1433126 Mucinivorans hirudinis 1579 1 species genus 44 77824 2 Alistipes 239759 1 0 species Alistipes finegoldii 77780 1 0 214856 0 1853231 1 1 family Odoribacteraceae 38406 3 0 1 283168 Odoribacter 2 38405 9 genus Odoribacter splanchnicus 1 38396 species 0 28118 family 35 11 156028 Prevotellaceae 171552 1 0 Prevotella 155993 10 159 genus 0 1 838 Prevotella enoeca 1352 1 species 0 76123 species Prevotella jejuni 2564 1 0 1177574 0 589436 species Prevotella fusca 2019 1 species Prevotella denticola 1 2849 0 28129 5060 1 Prevotella dentalis species 52227 0 no rank 869 1 0 2638335 869 1 Prevotella sp. oral taxon 299 species 652716 0 2625 1 Prevotella melaninogenica species 28132 0 0 839 Prevotella ruminicola 1 3272 species species 135224 1 Prevotella intermedia 28131 0 47 family Bacteroidaceae 2908037 11 0 1 815 Bacteroides 2907990 10 63611 genus 0 1 816 1796613 0 186415 1 Bacteroides caecimuris species 28119 0 species 47696 1 Bacteroides zoogleoformans species Bacteroides caccae 1 154079 0 47678 0 290053 species Bacteroides helcogenes 59193 1 0 817 species Bacteroides fragilis 1082066 1 246787 0 151753 1 Bacteroides cellulosilyticus species species 844990 1 Bacteroides thetaiotaomicron 818 0 species Bacteroides heparinolyticus 46922 1 0 28113 species 271265 1 Bacteroides ovatus 28116 0 5 4375145 no rank 333046 0 1 genus Candidatus Azobacteroides 2 551 0 511434 1 species 1 550 Candidatus Azobacteroides pseudotrichonymphae 511435 0 909656 0 genus 4374594 3 species 1 3578565 Bacteroides vulgatus 821 0 376805 0 species 1 56960 Bacteroides salanitronis 739069 1 Bacteroides dorei species 357276 0 0 2005519 1 Barnesiellaceae 3 99694 6 family Barnesiella 2 99688 67 genus 0 397864 1 species 1 99621 Barnesiella viscericola 397865 0 2005520 0 family 6 6109 Proteiniphilum 2 2426 27 genus 0 1 294702 0 1642647 Proteiniphilum saccharofermentans 1 2399 species 6 genus Petrimonas 2 2153 0 1 307628 1 2147 Petrimonas mucosa species 1642646 0 Fermentimonas 1530 2 1 genus 0 1784836 1 Fermentimonas caenicola 1 1529 species 0 1562970 1 171551 0 5187 4 Porphyromonadaceae family 33 10 genus Porphyromonas 3 5154 0 1 836 species Porphyromonas asaccharolytica 1 1246 0 28123 species Porphyromonas gingivalis 3898 1 0 837 576005 7 Tannerellaceae family 88 2005525 1 0 375288 1 0 3 556010 Parabacteroides genus 132 0 2649774 1 370955 no rank 2025876 0 370955 1 Parabacteroides sp. CT06 species 0 823 Parabacteroides distasonis 1 184923 species 0 1 195950 29 genus Tannerella 19907 3 Tannerella forsythia 1 16289 species 0 28112 no rank 1 3589 2620507 0 species Tannerella sp. oral taxon HOT-286 1 3589 0 712710 0 117747 1 Sphingobacteriia 12246 23 26 class order 12 12220 22 Sphingobacteriales 200666 1 0 0 84566 1 34 family Sphingobacteriaceae 21 12208 2425 4 Mucilaginibacter genus 9 1 423349 0 no rank 828 1 2617802 0 1300914 0 species 828 1 Mucilaginibacter sp. PAMC 26640 1234841 0 517 1 Mucilaginibacter sp. BJC16-A31 species 0 1550579 species Mucilaginibacter gotjawali 1 1071 794 1 no rank 84568 0 1986952 0 794 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 1 1649482 0 genus 4 841 2 Pseudopedobacter species 1 837 Pseudopedobacter saltans 151895 0 0 929509 840 1 genus 995 0 species 840 1 Solitalea canadensis Sphingobacterium 3517 6 22 genus 0 1 28453 Sphingobacterium mizutaii 684 1 species 0 1010 2609468 0 4 2811 no rank 1538644 0 574 1 Sphingobacterium sp. ML3W species 0 743722 Sphingobacterium sp. 21 1 703 species species 738 1 Sphingobacterium sp. G1-14 2003121 0 1 796 Sphingobacterium sp. B29 species 1933220 0 6 3757 Pedobacter genus 10 1 84567 0 0 984 species Pedobacter heparinus 714 1 2628915 0 1 811 no rank species 811 1 Pedobacter sp. PACM 27299 1727164 0 188932 0 species 1 704 Pedobacter cryoconitis 430522 0 733 1 Pedobacter steynii species species Pedobacter ginsengisoli 1 785 0 363852 0 456828 450 2 phylum 1 456826 0 genus 7 450 2 Candidatus Cloacimonas species 443 1 Candidatus Cloacimonas acidaminovorans 456827 0 2157 0 superkingdom 75687 269 1783276 0 1 105 clade phylum 1 105 0 1801631 1 105 genus 0 2490204 1920749 0 105 1 Candidatus Micrarchaeota archaeon Mia14 species 0 1783275 48 3847 clade 0 28889 phylum 36 2626 0 1 183924 Thermoprotei 36 2626 5 class order 8 1014 0 2281 8 1014 family 118883 0 0 69655 1 230 genus 111955 0 1 230 Sulfolobus tokodaii species 41980 0 genus 149 2 species Metallosphaera cuprina 1 115 0 1006005 species 34 1 Metallosphaera sedula 43687 0 0 12914 genus 142 1 species Acidianus hospitalis 142 1 0 563177 genus 3 388 0 2284 100 1 Sulfolobus acidocaldarius species 2285 0 43080 0 1 196 Sulfolobus islandicus species 1 92 no rank 0 2641160 species 92 1 Sulfolobus sp. A20 1891280 0 genus 1 105 2100760 0 0 2287 Sulfolobus solfataricus 105 1 species 12 695 Desulfurococcales order 4 1 114380 0 0 2307 family 253 3 54251 0 genus 84 1 species Pyrolobus fumarii 84 1 0 54252 genus 85 1 54247 0 0 54248 Hyperthermus butylicus 1 85 species 2308 0 genus 1 84 0 1273541 species Pyrodictium delaneyi 84 1 0 2272 family 8 438 100 2 genus 0 54258 0 160233 species Ignicoccus hospitalis 1 79 21 1 Ignicoccus islandicus species 54259 0 genus 1 24 54253 0 species Thermosphaera aggregans 1 24 0 54254 1 67 genus 0 477695 1 67 Thermogladius calderae species 1200300 0 0 2273 73 2 genus 94694 0 species 1 42 Desulfurococcus amylolyticus 31 1 Desulfurococcus mucosus species 2275 0 2279 0 2 174 genus 0 2280 species Staphylothermus marinus 1 49 84599 0 species 125 1 Staphylothermus hellenicus 0 2266 1 Thermoproteales 13 743 1 order family 6 401 7 Thermoproteaceae 1 2267 0 0 2276 42 1 genus 0 2277 Pyrobaculum islandicum 42 1 species 164450 0 2 136 genus 0 164451 species Vulcanisaeta distributa 83 1 985052 0 1 53 Vulcanisaeta moutnovskia species 76886 0 1 50 genus 0 76887 Caldivirga maquilingensis 1 50 species 167 2 genus 0 2270 2271 0 1 49 Thermoproteus tenax species species 118 1 Thermoproteus uzoniensis 184117 0 family 7 341 5 Thermofilaceae 114378 1 0 2268 0 genus 4 334 species Thermofilum adornatus 1 92 0 1365176 1550241 0 52 1 Thermofilum uzonense species 0 1483572 species Thermofilum carboxyditrophus 84 1 species 106 1 Thermofilum pendens 2269 0 order 169 2 0 871006 0 255472 105 1 family 0 200414 genus 1 105 species 105 1 Caldisphaera lagunensis 200415 0 64 1 family 0 871007 genus 1 64 0 105850 species 64 1 Acidilobus saccharovorans 242703 0 51967 0 56 1 phylum genus 1 56 0 498845 0 498846 Candidatus Korarchaeum cryptofilum 56 1 species 0 651137 phylum 11 1165 no rank 319 3 0 651142 0 1593364 1 118 genus Candidatus Nitrosopelagicus brevis 118 1 species 0 1410606 0 1825023 201 2 genus 0 1603555 species Candidatus Nitrosotenuis cloacae 118 1 0 1846278 species Candidatus Nitrosotenuis sp. AQ6f 83 1 0 31932 order 3 407 338190 0 407 3 family 1993653 0 110 1 genus 1898749 0 species 110 1 Candidatus Nitrosomarinus catalina genus 297 2 338191 0 species 1 153 Candidatus Nitrosopumilus sediminis 1229909 0 0 1580092 species Candidatus Nitrosopumilus adriaticus 144 1 1643678 1 0 class 2 5 439 Nitrososphaeria 1 61 order 1968909 0 1968910 0 family 61 1 genus 61 1 498374 0 0 2045011 Candidatus Nitrosocaldus islandicus 1 61 species 0 1 1033996 1 order Nitrososphaerales 376 3 family 2 375 0 1033997 2 375 Nitrososphaera genus 1 1 497726 0 0 1034015 Nitrososphaera viennensis 374 1 species 5 phylum Euryarchaeota 220 71735 0 1 28890 0 2283794 clade 28948 39 Methanobacteria 25974 24 16 class 0 1 183925 0 1 2158 3 order Methanobacteriales 23 25958 0 1 2159 Methanobacteriaceae 21 25831 4 family 2172 1 0 genus 2 23814 7 Methanobrevibacter 0 294671 species Methanobrevibacter olleyae 230 1 0 230361 species Methanobrevibacter millerae 377 1 2173 0 species 22283 1 Methanobrevibacter smithii no rank 528 2 2638681 0 species Methanobrevibacter sp. AbM4 1 229 0 224719 species Methanobrevibacter sp. YE315 299 1 0 1609968 1 394 Methanobrevibacter ruminantium species 83816 0 7 1348 genus 2160 0 species 1 310 Methanobacterium formicicum 2162 0 0 877455 Methanobacterium lacus 1 221 species Methanobacterium paludis 1 176 species 0 868131 330 2 no rank 0 2627676 0 1379702 Methanobacterium sp. MB1 1 149 species 1911685 0 181 1 Methanobacterium sp. MZ-A1 species Methanobacterium congolense 141 1 species 0 118062 170 1 Methanobacterium subterraneum species 59277 0 0 1 145260 2 genus Methanothermobacter 347 5 Methanothermobacter marburgensis 1 93 species 0 145263 145261 0 species 66 1 Methanothermobacter wolfeii no rank 1 117 0 2631116 866790 0 species 1 117 Methanothermobacter sp. CaT2 145262 0 species 1 69 Methanothermobacter thermautotrophicus genus 1 318 2316 0 species 318 1 Methanosphaera stadtmanae 2317 0 2178 0 family 124 1 genus 124 1 0 2179 0 2180 species Methanothermus fervidus 124 1 2974 15 Methanococci class 4 183939 1 0 1 2182 0 2970 14 Methanococcales order 2 family 7 1301 0 196117 6 1043 genus 196118 0 1 218 no rank 2641196 0 Methanocaldococcus sp. FS406-22 218 1 species 0 644281 species 1 112 Methanocaldococcus infernus 67760 0 0 1301915 Methanocaldococcus bathoardescens 202 1 species species 1 180 Methanocaldococcus fervens 83171 0 species Methanocaldococcus jannaschii 169 1 0 2190 0 73913 species Methanocaldococcus vulcanius 162 1 196119 0 258 1 genus species Methanotorris igneus 258 1 0 2189 6 family Methanococcaceae 6 1667 0 1 2183 genus 131 1 155862 0 Methanothermococcus okinawensis 1 131 species 0 155863 0 2184 4 1530 genus 0 39152 Methanococcus maripaludis 994 1 species species Methanococcus vannielii 1 250 0 2187 0 42879 species Methanococcus aeolicus 1 115 0 2188 species Methanococcus voltae 1 171 926 8 class 0 183980 8 926 Archaeoglobales order 1 1 2231 0 0 2232 7 925 family 0 190818 2 358 genus species Geoglobus acetivorans 1 142 0 565033 113653 0 species 1 216 Geoglobus ahangari 54260 0 genus 1 87 0 54261 Ferroglobus placidus 87 1 species genus 4 480 2233 0 79 1 Archaeoglobus profundus species 84156 0 1316941 0 115 1 Archaeoglobus sulfaticallidus species species 136 1 Archaeoglobus veneficus 58290 0 2234 0 1 150 Archaeoglobus fulgidus species 32762 114 clade 2290931 0 19203 65 Halobacteria class 138 1 183963 0 1644060 1 0 5709 20 Natrialbales order 61 family 61 19 5648 Natrialbaceae 1644061 1 0 1 387342 0 2 778 Halopiger genus 3 0 387343 Halopiger xanaduensis 1 775 species 0 1 29287 1 genus Natronococcus 2 624 Natronococcus occultus 623 1 species 0 29288 0 1 88723 3 genus Natrinema 3 830 2622230 0 379 1 no rank 1 379 Natrinema sp. J7-2 species 406552 0 species Natrinema pellirubrum 448 1 0 69525 Halostagnicola 2 432 6 genus 0 1 353799 Halostagnicola larsenii 1 426 species 0 353800 2256 0 genus 274 1 0 44930 species Natronobacterium gregoryi 1 274 Halobiforma 603 2 7 genus 0 1 203193 229731 0 species 596 1 Halobiforma lacisalsi 1 1269201 0 genus 2 573 2 Salinarchaeum 571 1 no rank 0 2621923 1333523 0 1 571 Salinarchaeum sp. Harcht-Bsk1 species 63742 0 383 1 genus species Natrialba magadii 383 1 0 13769 0 1 121871 Haloterrigena 3 1090 31 genus species 1 376 Haloterrigena daqingensis 588898 0 species Haloterrigena turkmenica 1 683 0 62320 1 1644055 0 order 109 5570 18 Haloferacales 1 707 no rank 0 2678336 0 756883 halophilic archaeon DL31 707 1 species 0 1644056 1 Haloferacaceae 8 2628 13 family 0 293431 genus 252 1 species Haloquadratum walsbyi 1 252 0 293091 1 60846 0 genus 4 2 284 Halogeometricum 1 280 Halogeometricum borinquense species 60847 0 27 genus Haloferax 2079 4 0 1 2251 species 871 1 Haloferax gibbonsii 35746 0 Haloferax mediterranei 440 1 species 0 2252 0 2246 species Haloferax volcanii 1 741 18 family Halorubraceae 2126 8 0 1963271 1 56688 1 0 992 3 Halorubrum genus 73 species Halorubrum trapanicum 482 1 0 29284 0 2247 species Halorubrum lacusprofundi 437 1 Halopenitus 2 396 18 genus 0 1209988 1 1048396 0 species 1 378 Halopenitus persicus 6 genus Salinigranum 2 720 0 1644057 1 species Salinigranum rubrum 1 714 0 755307 1 2235 0 order 100 7786 26 Halobacteriales 2660 10 Halobacteriaceae family 12 1 2236 0 12 genus Halobacterium 4 1537 0 1 2239 Halobacterium hubeiense 1 670 species 0 1407499 0 2242 species Halobacterium salinarum 350 1 0 2668073 1 505 no rank Halobacterium sp. DL1 505 1 species 0 751944 2 574 Halalkalicoccus genus 6 1 332246 0 0 413810 species Halalkalicoccus jeotgali 1 568 genus 1 362 1980514 0 species Halodesulfurarchaeum formicicum 1 362 0 1873524 Halanaeroarchaeum 175 2 2 genus 0 1 1656823 0 1604004 species Halanaeroarchaeum sulfurireducens 173 1 1963268 1 0 5026 15 Haloarculaceae family 53 genus 1 3 661 Natronomonas 63743 1 0 0 416273 species Natronomonas moolapensis 1 238 422 1 Natronomonas pharaonis species 2257 0 Halorhabdus 1070 3 12 genus 0 1 146825 430914 0 337 1 Halorhabdus tiamatea species Halorhabdus utahensis 721 1 species 0 146826 genus 63 1934 5 Haloarcula 2237 1 0 51589 0 species 1 433 Haloarcula hispanica Haloarcula taiwanensis 428 1 species 0 1932004 Haloarcula marismortui 1 628 species 0 2238 382 1 no rank 2624677 0 1592728 0 1 382 Haloarcula sp. CBA1115 species 0 1073987 1 Halorientalis 696 2 4 genus 0 2648975 no rank 692 1 0 1932360 Halorientalis sp. IM1011 692 1 species 0 203135 1 612 genus 0 57705 species Halomicrobium mukohataei 612 1 class 23 13559 49 Methanomicrobia 224756 1 0 Methanosarcinales 9012 27 29 order 0 1 94695 23 family Methanosaetaceae 4 1034 0 143067 1 0 1 2222 Methanothrix 1011 3 1 genus species 1 532 Methanosaeta harundinacea 301375 0 species 1 478 Methanothrix soehngenii 2223 0 0 1 2206 Methanosarcinaceae 7949 22 6 family 304 1 genus 2321 0 2322 0 304 1 Methanohalobium evestigatum species genus 430 1 101191 0 species Methanomethylovorans hollandica 430 1 0 101192 2175 0 genus 2 415 0 2176 species Methanohalophilus mahii 282 1 species 1 133 Methanohalophilus halophilus 2177 0 2 366 genus 2225 0 0 2226 species Methanococcoides methylutens 1 225 species 141 1 Methanococcoides burtonii 29291 0 0 2220 1 341 genus 0 420950 Methanolobus psychrophilus 341 1 species 316 1 genus 196136 0 species Methanosalsum zhilinae 1 316 0 39669 2207 1 0 5771 13 Methanosarcina genus 10 38027 0 461 1 Methanosarcina siciliae species 2214 0 448 1 Methanosarcina acetivorans species 2210 0 1 286 Methanosarcina thermophila species 2209 0 species 1 607 Methanosarcina mazei 0 2215 Methanosarcina vacuolata 405 1 species 0 170861 Methanosarcina lacustris 1 277 species 2644672 0 no rank 4 1701 species Methanosarcina sp. WH1 1 381 0 1434102 species Methanosarcina sp. Kolksee 1 421 0 1434099 Methanosarcina sp. MTP4 1 455 species 0 1434100 Methanosarcina sp. WWM596 1 444 species 0 1434103 418008 0 species 1 515 Methanosarcina horonobensis 2208 0 1061 1 Methanosarcina barkeri species 1 2191 0 16 3681 Methanomicrobiales order 18 0 1 2194 3 family Methanomicrobiaceae 1607 7 0 1 45989 8 genus Methanoculleus 1361 4 species Methanoculleus marisnigri 544 1 0 2198 0 2619537 322 1 no rank 86622 0 1 322 Methanoculleus sp. MAB1 species Methanoculleus bourgensis 487 1 species 0 83986 genus 1 2 243 Methanolacinia 1 230355 0 54120 0 242 1 Methanolacinia petrolearia species 1198451 1 0 1230 6 Methanoregulaceae family 4 1 475087 0 2 276 Methanosphaerula genus 2 species Methanosphaerula palustris 1 274 0 475088 0 1 395331 Methanoregula 950 3 2 genus Methanoregula formicica 610 1 species 0 882104 Methanoregula boonei 1 338 species 0 358766 327 1 family 196137 0 0 2202 1 327 genus 1 327 Methanospirillum hungatei species 2203 0 88404 0 family 499 1 0 2192 1 499 genus 0 83984 Methanocorpusculum labreanum 499 1 species 0 570264 1 21 order Methanocellales 843 5 family 2 4 822 Methanocellaceae 1 570265 0 820 3 Methanocella genus 2 1 570266 0 Methanocella conradii 1 221 species 0 1175444 species Methanocella arvoryzae 597 1 0 1175445 18 3505 clade 0 2283796 0 1 183967 9 class Thermoplasmata 16 3250 706 1 no rank 1234666 0 species 706 1 methanogenic archaeon ISO4-H5 1495144 0 0 2301 order 9 1570 1 family Thermoplasmataceae 153 3 0 1 46659 genus 152 2 0 2302 50339 0 species 83 1 Thermoplasma volcanium 2303 0 69 1 Thermoplasma acidophilum species family 229 2 0 90142 genus 2 229 0 74968 species 1 105 Ferroplasma acidiphilum 74969 0 97393 0 124 1 Ferroplasma acidarmanus species 0 46630 family 1 141 46631 0 141 1 genus Picrophilus torridus 141 1 species 0 82076 2 164 family 1747776 0 Cuniculiplasma 164 2 1 genus 0 1747777 1 1673428 0 1 163 Cuniculiplasma divulgatum species 0 1919231 no rank 883 1 1054217 0 1 883 Thermoplasmatales archaeon BRNA1 species order 965 5 0 1235850 2517203 0 582 2 family 0 1 1291539 17 genus Candidatus Methanomethylophilus 2 582 1291540 0 species 1 565 Candidatus Methanomethylophilus alvus 0 1577788 1 2 family Methanomassiliicoccaceae 383 3 1607807 0 131 1 genus 1577791 0 131 1 Candidatus Methanoplasma termitum species 1 250 genus 0 1080709 1406512 0 250 1 Candidatus Methanomassiliicoccus intestinalis species 0 1803510 clade 2 255 255 2 genus 379546 0 species 205 1 Aciduliprofundum boonei 379547 0 2633939 0 50 1 no rank species 50 1 Aciduliprofundum sp. MAR08-339 673860 0 Thermococci 5589 40 8 class 0 1 183968 0 1 2258 Thermococcales 5581 39 7 order 1 2259 0 family 50 5574 38 Thermococcaceae Thermococcus 29 4738 110 genus 0 1 2263 134 1 Thermococcus paralvinellae species 582419 0 1 145 Thermococcus peptonophilus species 53952 0 0 72803 species Thermococcus siculi 1 162 54262 0 species 64 1 Thermococcus chitonophagus no rank 6 1228 0 2627626 246969 0 species 283 1 Thermococcus sp. AM4 0 122420 species Thermococcus sp. P6 1 104 0 2008440 species Thermococcus sp. 5-4 224 1 species 1 239 Thermococcus sp. 4557 1042877 0 Thermococcus sp. 2319x1 148 1 species 0 1674923 Thermococcus sp. EXT12c 1 230 species 0 2016361 197 1 Thermococcus radiotolerans species 187880 0 187878 0 species 1 162 Thermococcus gammatolerans 0 1505907 Thermococcus eurythermalis 131 1 species 0 277988 Thermococcus thioreducens 192 1 species Thermococcus sibiricus 122 1 species 0 172049 71997 0 1 125 Thermococcus gorgonarius species species 103 1 Thermococcus piezophilus 1712654 0 0 49899 Thermococcus profundus 1 147 species 0 195522 species Thermococcus nautili 1 111 71998 0 species 1 92 Thermococcus pacificus 0 311400 species Thermococcus kodakarensis 252 1 0 110164 Thermococcus guaymasensis 132 1 species species Thermococcus barossii 207 1 0 54077 0 163003 species Thermococcus cleftensis 203 1 species 1 151 Thermococcus litoralis 2265 0 250 1 Thermococcus celer species 2264 0 species 104 1 Thermococcus onnurineus 342948 0 55802 0 species 1 214 Thermococcus barophilus 1 67 genus 83867 0 species Palaeococcus pacificus 1 67 0 971279 7 719 genus 2260 0 no rank 202 2 2629106 0 Pyrococcus sp. NA2 1 83 species 0 342949 0 1183377 Pyrococcus sp. ST04 1 119 species species 71 1 Pyrococcus furiosus 2261 0 0 1609559 species Pyrococcus kukulkanii 1 82 species 1 145 Pyrococcus horikoshii 53953 0 29292 0 1 80 Pyrococcus abyssi species 0 1008460 Pyrococcus yayanosii 139 1 species 1 0 name 0