members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4655 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 77955 17404859 2157 superkingdom 259 70592 0 28890 214 phylum 59302 0 0 5399 class 40 2 1 Thermococci 183968 0 5397 order 39 Thermococcales 1 2258 9 family 38 Thermococcaceae 1 2259 7 0 5388 1957 0 2260 genus 7 559 0 2629106 2 no rank Pyrococcus sp. ST04 1183377 species 1 360 0 0 199 1 species 342949 Pyrococcus sp. NA2 species 1 Pyrococcus yayanosii 1008460 0 108 82 0 1609559 Pyrococcus kukulkanii 1 species 1 species 2261 Pyrococcus furiosus 0 282 53953 Pyrococcus horikoshii 1 species 685 0 29292 Pyrococcus abyssi 1 species 241 0 57 0 83867 genus 1 species 1 Palaeococcus pacificus 971279 0 57 0 3367 genus 29 24 Thermococcus 1 2263 Thermococcus piezophilus 1712654 species 1 29 0 0 108 species 1 Thermococcus kodakarensis 311400 0 47 1 species 71998 Thermococcus pacificus 1 species 54077 Thermococcus barossii 0 65 82 0 110164 Thermococcus guaymasensis 1 species 60 0 277988 Thermococcus thioreducens 1 species 105 0 187878 Thermococcus gammatolerans 1 species species 1 Thermococcus profundus 49899 0 246 0 554 no rank 6 2627626 92 0 1674923 Thermococcus sp. 2319x1 1 species 124 0 1042877 Thermococcus sp. 4557 1 species 119 0 Thermococcus sp. EXT12c 2016361 species 1 36 0 2008440 Thermococcus sp. 5-4 1 species 0 129 species 1 Thermococcus sp. AM4 246969 Thermococcus sp. P6 122420 species 1 54 0 0 199 1 species 163003 Thermococcus cleftensis 259 0 71997 Thermococcus gorgonarius 1 species 110 0 Thermococcus peptonophilus 53952 species 1 Thermococcus radiotolerans 187880 species 1 63 0 54262 Thermococcus chitonophagus 1 species 143 0 102 0 2265 Thermococcus litoralis 1 species 0 89 1 species 342948 Thermococcus onnurineus 0 422 1 species 55802 Thermococcus barophilus 124 0 195522 Thermococcus nautili 1 species Thermococcus siculi 72803 species 1 91 0 582419 Thermococcus paralvinellae 1 species 96 0 89 0 Thermococcus eurythermalis 1505907 species 1 1 species 2264 Thermococcus celer 0 82 Thermococcus sibiricus 172049 species 1 178 0 0 3580 15 clade 2283796 0 476 clade 2 1803510 379546 genus 2 476 0 379547 Aciduliprofundum boonei 1 species 442 0 34 0 2633939 1 no rank 0 34 species 1 Aciduliprofundum sp. MAR08-339 673860 0 3104 class 13 6 1 Thermoplasmata 183967 0 1923 order 7 2301 630 0 1919231 1 no rank 1 species 1054217 Thermoplasmatales archaeon BRNA1 0 630 416 0 46659 2 family 416 0 2302 genus 2 0 303 species 1 Thermoplasma volcanium 50339 Thermoplasma acidophilum 2303 species 1 113 0 46630 1 family 248 0 248 0 46631 1 genus 248 0 82076 Picrophilus torridus 1 species 130 0 1747776 1 family 0 130 genus 1 1747777 130 0 1673428 Cuniculiplasma divulgatum 1 species 2 family 90142 0 499 74968 2 genus 499 0 375 0 97393 Ferroplasma acidarmanus 1 species 74969 Ferroplasma acidiphilum 1 species 124 0 439 0 1234666 1 no rank 439 0 methanogenic archaeon ISO4-H5 1495144 species 1 0 736 4 order 1235850 587 0 1577788 family 2 genus 1 1080709 0 320 1 species 1406512 Candidatus Methanomassiliicoccus intestinalis 0 320 genus 1 1607807 0 267 species 1 Candidatus Methanoplasma termitum 1577791 0 267 2517203 2 family 149 0 149 0 12 Candidatus Methanomethylophilus 1 1291539 genus 2 0 137 1 species 1291540 Candidatus Methanomethylophilus alvus 1 Archaeoglobi 183980 15 class 10 1619 0 9 order 2231 0 1604 9 family 2232 1 Archaeoglobaceae 2 0 1604 255 0 190818 2 genus 0 103 species 1 Geoglobus ahangari 113653 152 0 565033 Geoglobus acetivorans 1 species genus 5 Archaeoglobus 1 2233 2 0 1080 1 species 1316941 Archaeoglobus sulfaticallidus 0 268 0 274 species 1 Archaeoglobus veneficus 58290 0 439 species 1 Archaeoglobus fulgidus 2234 0 97 1 species 84156 Archaeoglobus profundus 267 0 54260 1 genus Ferroglobus placidus 54261 species 1 267 0 clade 109 2290931 0 23587 class 48 22 1 Methanomicrobia 224756 0 15437 15 order 1 2191 1 Methanomicrobiales 0 3080 family 6 2194 0 1169 198 0 1 Methanolacinia 230355 2 genus 2 0 196 1 species 54120 Methanolacinia petrolearia 0 971 genus 4 8 Methanoculleus 1 45989 150 0 2198 Methanoculleus marisnigri 1 species 83986 Methanoculleus bourgensis 1 species 258 0 0 555 no rank 1 2619537 86622 Methanoculleus sp. MAB1 1 species 555 0 1 1198451 1 Methanoregulaceae 5 family 878 0 0 574 genus 3 1 Methanoregula 395331 3 species 1 Methanoregula formicica 882104 0 359 0 212 species 1 Methanoregula boonei 358766 475087 1 genus 303 0 Methanosphaerula palustris 475088 species 1 303 0 family 2 88404 0 295 genus 2 1 Methanocorpusculum 1 2192 0 295 0 294 species 1 Methanocorpusculum labreanum 83984 196137 family 1 737 0 737 0 2202 genus 1 species 1 Methanospirillum hungatei 2203 0 737 28 order 39 94695 1 Methanosarcinales 0 11689 23 family 76 2206 1 Methanosarcinaceae 0 10859 2225 2 genus 615 0 370 0 Methanococcoides burtonii 29291 species 1 2226 Methanococcoides methylutens 1 species 245 0 26 1 Methanosarcina 2207 genus 13 7266 0 285 0 Methanosarcina lacustris 170861 species 1 2214 Methanosarcina acetivorans 1 species 425 0 species 1 Methanosarcina siciliae 38027 0 508 no rank 4 2644672 0 1733 1 species 1434103 Methanosarcina sp. WWM596 0 458 0 498 1 species 1434099 Methanosarcina sp. Kolksee 0 564 species 1 Methanosarcina sp. MTP4 1434100 1434102 Methanosarcina sp. WH1 1 species 213 0 0 1880 1 species 2208 Methanosarcina barkeri 0 904 species 1 Methanosarcina mazei 2209 2210 Methanosarcina thermophila 1 species 227 0 Methanosarcina horonobensis 418008 species 1 448 0 830 0 2215 Methanosarcina vacuolata 1 species 2 genus 2220 Methanolobus 1 2 0 186 0 184 1 species 420950 Methanolobus psychrophilus 196136 genus 1 522 0 39669 Methanosalsum zhilinae 1 species 522 0 genus 1 101191 0 634 0 634 species 1 Methanomethylovorans hollandica 101192 754 0 2321 genus 1 species 1 Methanohalobium evestigatum 2322 0 754 0 806 genus 2 2175 2176 Methanohalophilus mahii 1 species 212 0 594 0 2177 Methanohalophilus halophilus 1 species 8 1 Methanosaetaceae 143067 family 4 791 0 1 Methanothrix 2222 1 genus 3 783 0 225 0 Methanosaeta harundinacea 301375 species 1 557 0 Methanothrix soehngenii 2223 species 1 646 0 8 570264 Methanocellales 1 4 order 3 family 570265 0 638 0 638 genus 3 Methanocella 1 570266 1 1 species 1175445 Methanocella arvoryzae 0 445 1 species 1175444 Methanocella conradii 0 192 8150 0 28 183963 Halobacteria 1 61 class 0 3301 order 28 21 1 Halobacteriales 2235 2236 Halobacteriaceae 1 11 11 family 899 0 36 332246 Halalkalicoccus 1 2 genus 241 0 0 205 species 1 Halalkalicoccus jeotgali 413810 0 95 genus 2 3 1 Halodesulfurarchaeum 1980514 Halodesulfurarchaeum formicicum 1873524 species 1 92 0 34 0 3 1 Halanaeroarchaeum 1656823 genus 2 0 31 species 1 Halanaeroarchaeum sulfurireducens 1604004 518 0 35 1 Halobacterium 2239 genus 4 149 0 2242 Halobacterium salinarum 1 species Halobacterium hubeiense 1407499 species 1 175 0 159 0 2668073 1 no rank 159 0 751944 Halobacterium sp. DL1 1 species 0 2381 16 family 1963268 1 Haloarculaceae 50 0 228 genus 3 1 Natronomonas 63743 5 0 82 1 species 416273 Natronomonas moolapensis 141 0 Natronomonas pharaonis 2257 species 1 0 480 3 genus 146825 Halorhabdus 1 4 0 304 species 1 Halorhabdus utahensis 146826 172 0 Halorhabdus tiamatea 430914 species 1 0 1011 genus 5 17 1 Haloarcula 2237 0 122 species 1 Haloarcula taiwanensis 1932004 328 0 2624677 no rank 1 species 1 Haloarcula sp. CBA1115 1592728 0 328 1 species 51589 Haloarcula hispanica 0 327 1 species 2238 Haloarcula marismortui 0 217 1 Halorientalis 1073987 7 genus 2 317 0 310 0 2648975 1 no rank 310 0 Halorientalis sp. IM1011 1932360 species 1 0 295 2 genus 1 203135 1 Halomicrobium 294 0 Halomicrobium mukohataei 57705 species 1 2302 0 20 1 Haloferacales 1644055 order 16 0 695 family 7 6 Halorubraceae 1 1963271 genus 1 1644057 0 275 275 0 Salinigranum rubrum 755307 species 1 genus 2 59 1 Halopenitus 1209988 0 222 Halopenitus persicus 1048396 species 1 163 0 192 0 17 1 Halorubrum 56688 genus 3 Halorubrum trapanicum 29284 species 1 102 0 2247 Halorubrum lacusprofundi 1 species 73 0 2678336 no rank 1 84 0 halophilic archaeon DL31 756883 species 1 84 0 1644056 7 family 1503 0 892 0 39 Haloferax 1 2251 genus 4 0 333 species 1 Haloferax volcanii 2246 1 species 2252 Haloferax mediterranei 0 212 35746 Haloferax gibbonsii 1 species 308 0 293431 1 genus 164 0 164 0 293091 Haloquadratum walsbyi 1 species Halogeometricum 1 60846 2 genus 2 447 0 0 445 species 1 Halogeometricum borinquense 60847 16 order 1644060 1 Natrialbales 24 0 2519 0 2495 15 family 25 1644061 1 Natrialbaceae 0 449 genus 2 88723 225 0 2622230 1 no rank 0 225 1 species 406552 Natrinema sp. J7-2 224 0 69525 Natrinema pellirubrum 1 species 381 0 3 1 Haloterrigena 121871 genus 3 237 0 Haloterrigena turkmenica 62320 species 1 141 0 Haloterrigena daqingensis 588898 species 1 2 genus 203193 1 Halobiforma 1 0 514 Halobiforma lacisalsi 229731 species 1 513 0 0 170 genus 1 1269201 0 170 1 no rank 2621923 0 170 species 1 Salinarchaeum sp. Harcht-Bsk1 1333523 122 0 2256 genus 1 species 1 Natronobacterium gregoryi 44930 0 122 207 0 29287 genus 1 207 0 29288 Natronococcus occultus 1 species genus 2 Natrialba 1 63742 1 0 247 1 species 13769 Natrialba magadii 0 246 165 0 353799 1 genus 0 165 species 1 Halostagnicola larsenii 353800 215 0 387342 genus 1 species 1 Halopiger xanaduensis 387343 0 215 0 25117 clade 40 2283794 1 Methanobacteria 183925 3 class 24 12543 0 2158 order 23 12540 0 0 914 1 family 2178 914 0 2179 genus 1 Methanothermus fervidus 2180 species 1 914 0 11626 0 2159 1 Methanobacteriaceae 3 22 family 145260 1 Methanothermobacter 2 5 genus 168 0 53 0 Methanothermobacter thermautotrophicus 145262 species 1 0 43 species 1 Methanothermobacter marburgensis 145263 2631116 1 no rank 44 0 0 44 species 1 Methanothermobacter sp. CaT2 866790 0 26 1 species 145261 Methanothermobacter wolfeii 5 2172 1 Methanobrevibacter 7 genus 7846 0 0 2121 1 species 294671 Methanobrevibacter olleyae species 1 Methanobrevibacter smithii 2173 0 1712 2638681 no rank 2 1736 0 1084 0 Methanobrevibacter sp. YE315 1609968 species 1 224719 Methanobrevibacter sp. AbM4 1 species 652 0 1 species 83816 Methanobrevibacter ruminantium 0 1097 230361 Methanobrevibacter millerae 1 species 1175 0 0 2577 genus 8 Methanobacterium 1 2160 2 2 no rank 2627676 0 676 species 1 Methanobacterium sp. MZ-A1 1911685 0 267 409 0 Methanobacterium sp. MB1 1379702 species 1 species 1 Methanobacterium paludis 868131 0 133 Methanobacterium subterraneum 59277 species 1 220 0 877455 Methanobacterium lacus 1 species 969 0 351 0 Methanobacterium formicicum 2162 species 1 species 1 Methanobacterium congolense 118062 0 226 2316 1 genus 1032 0 1 species 2317 Methanosphaera stadtmanae 0 1032 183939 16 class 12574 0 16 order 2182 1 Methanococcales 25 0 12574 6 family 2183 0 8038 1 genus 155862 0 941 155863 Methanothermococcus okinawensis 1 species 941 0 0 7097 genus 5 2 Methanococcus 1 2184 0 1313 species 1 Methanococcus voltae 2188 Methanococcus maripaludis 39152 species 1 4213 0 0 497 1 species 42879 Methanococcus aeolicus species 1 Methanococcus vannielii 2187 0 1072 196117 9 family 4511 0 196118 Methanocaldococcus 1 1 7 genus 3677 0 2641196 1 no rank 982 0 982 0 644281 Methanocaldococcus sp. FS406-22 1 species 1 species 1301915 Methanocaldococcus bathoardescens 0 295 0 687 1 species 2190 Methanocaldococcus jannaschii 585 0 Methanocaldococcus vulcanius 73913 species 1 species 1 Methanocaldococcus infernus 67760 0 276 851 0 83171 Methanocaldococcus fervens 1 species 0 834 genus 2 5 1 Methanotorris 196119 1 species 2189 Methanotorris igneus 0 829 44 clade 1783275 0 11164 28889 34 phylum 7282 0 Thermoprotei 1 183924 190 class 34 7282 0 11 order 114380 0 969 0 813 family 8 2272 2 genus 2273 0 58 0 48 1 species 94694 Desulfurococcus amylolyticus 0 10 1 species 2275 Desulfurococcus mucosus 54258 2 genus 96 0 0 78 1 species 54259 Ignicoccus islandicus 0 18 species 1 Ignicoccus hospitalis 160233 21 0 477695 genus 1 21 0 1200300 Thermogladius calderae 1 species 2 genus 2279 0 532 358 0 2280 Staphylothermus marinus 1 species 174 0 Staphylothermus hellenicus 84599 species 1 54253 1 genus 106 0 1 species 54254 Thermosphaera aggregans 0 106 0 156 family 3 2307 0 22 genus 1 54247 Hyperthermus butylicus 54248 species 1 22 0 1 genus 54251 0 41 41 0 Pyrolobus fumarii 54252 species 1 2308 1 genus 93 0 0 93 species 1 Pyrodictium delaneyi 1273541 964 0 2266 11 order 1 2267 1 Thermoproteaceae 7 family 459 0 247 0 76886 1 genus 0 247 species 1 Caldivirga maquilingensis 76887 genus 2 164450 0 116 49 0 Vulcanisaeta moutnovskia 985052 species 1 164451 Vulcanisaeta distributa 1 species 67 0 72 0 2270 genus 2 Thermoproteus uzoniensis 184117 species 1 26 0 species 1 Thermoproteus tenax 2271 0 46 0 23 genus 1 2276 Pyrobaculum islandicum 2277 species 1 23 0 0 505 4 family 114378 genus 4 2268 0 505 1483572 Thermofilum carboxyditrophus 1 species 39 0 species 1 Thermofilum adornatus 1365176 0 155 0 247 species 1 Thermofilum pendens 2269 1 species 1550241 Thermofilum uzonense 0 64 2281 Sulfolobales 1 23 9 order 4442 0 4419 0 118883 family 8 genus 1 12914 0 718 718 0 Acidianus hospitalis 563177 species 1 1 genus 69655 0 941 941 0 111955 Sulfolobus tokodaii 1 species 0 160 genus 2 41980 1 species 1006005 Metallosphaera cuprina 0 31 1 species 43687 Metallosphaera sedula 0 129 genus 3 2284 0 2299 1173 0 Sulfolobus islandicus 43080 species 1 Sulfolobus acidocaldarius 2285 species 1 338 0 0 788 1 no rank 2641160 species 1 Sulfolobus sp. A20 1891280 0 788 2100760 genus 1 301 0 species 1 Sulfolobus solfataricus 2287 0 301 871006 order 2 717 0 83 0 871007 family 1 1 genus 105850 0 83 83 0 Acidilobus saccharovorans 242703 species 1 1 family 255472 0 634 0 634 1 genus 200414 634 0 Caldisphaera lagunensis 200415 species 1 30 0 51967 1 phylum genus 1 498845 0 30 0 30 species 1 Candidatus Korarchaeum cryptofilum 498846 651137 phylum 9 3852 0 0 2295 3 order 31932 2295 0 338190 family 3 338191 2 genus 1875 0 Candidatus Nitrosopumilus adriaticus 1580092 species 1 1035 0 Candidatus Nitrosopumilus sediminis 1229909 species 1 840 0 genus 1 1993653 0 420 420 0 1898749 Candidatus Nitrosomarinus catalina 1 species 0 1040 no rank 3 651142 0 623 genus 2 1825023 1603555 Candidatus Nitrosotenuis cloacae 1 species 597 0 Candidatus Nitrosotenuis sp. AQ6f 1846278 species 1 26 0 417 0 1593364 genus 1 1410606 Candidatus Nitrosopelagicus brevis 1 species 417 0 517 0 1643678 3 class 1 Nitrososphaerales 1033996 1 order 2 277 0 1033997 1 family 276 0 genus 1 497726 0 276 276 0 Nitrososphaera viennensis 1034015 species 1 1 order 1968909 0 240 240 0 1968910 1 family 0 240 genus 1 498374 2045011 Candidatus Nitrosocaldus islandicus 1 species 240 0 clade 1 1783276 0 126 0 126 phylum 1 1801631 0 126 1 genus 2490204 Candidatus Micrarchaeota archaeon Mia14 1920749 species 1 126 0 superkingdom 4364 135 1 Bacteria 2 0 17256312 200938 5 phylum 1449 0 0 1449 class 5 1 Chrysiogenetes 118001 59 189769 Chrysiogenales 1 128 4 order 1390 0 1262 0 1 189770 1 Chrysiogenaceae 3 family 6 Desulfurispirillum 1 393029 genus 2 1261 0 0 1255 species 1 Desulfurispirillum indicum 936456 4 clade 2498710 0 1012 phylum 4 67814 0 1012 693071 class 4 1012 0 0 1012 4 order 693072 Caldisericales 1 1 0 1011 3 family 1 693073 Caldisericaceae 1 693074 1 Caldisericum 2 2 genus 1010 0 1 species 693075 Caldisericum exile 0 1008 0 29768 clade 94 1783257 204428 23 phylum 5880 0 23 class 21 204429 Chlamydiia 1 0 5880 5 51291 1 Chlamydiales 14 order 3212 0 13 family 809 1 Chlamydiaceae 1 0 3207 no rank 12 1113537 0 3206 3206 0 10 810 Chlamydia 1 12 genus 695 0 Chlamydia gallinacea 1457153 species 1 100 0 83560 Chlamydia muridarum 1 species 0 590 species 1 Chlamydia pneumoniae 83558 0 143 species 1 Chlamydia avium 1457141 0 494 1 species 83556 Chlamydia felis 1 species 85991 Chlamydia pecorum 0 349 59 0 813 Chlamydia trachomatis 1 species 83559 Chlamydia suis 1 species 69 0 83554 Chlamydia psittaci 1 species 186 0 174 0 Chlamydia abortus 83555 species 1 1 species 83557 Chlamydia caviae 0 337 order 8 1 1 Parachlamydiales 1963360 0 2647 92713 2 family 1772 0 83551 1 genus 1048 0 1048 0 Parachlamydia acanthamoebae 83552 species 1 282132 genus 1 724 0 389348 Candidatus Protochlamydia naegleriophila 1 species 724 0 0 719 family 3 1 Simkaniaceae 92712 1 genus 2 Simkania 1 34093 1 0 718 1 species 83561 Simkania negevensis 0 717 1 92714 1 Waddliaceae 2 family 155 0 genus 1 71666 0 154 71667 Waddlia chondrophila 1 species 154 0 0 9785 28 phylum 74201 Verrucomicrobia 1 10 2 no rank 417295 0 2220 0 1268 species 1 Verrucomicrobia bacterium 2026799 0 952 1 species 1637999 Verrucomicrobia bacterium IMCC26134 3232 0 1 Verrucomicrobiae 203494 2 class 6 Verrucomicrobiales 1 48461 22 order 5 3230 0 family 4 1 Akkermansiaceae 1647988 26 0 3208 0 3182 genus 3 5 1 Akkermansia 239934 species 1 Akkermansia glycaniphila 1679444 0 1030 species 1 Akkermansia muciniphila 239935 0 2147 class 5 1955630 0 377 1 Methylacidiphilales 717963 2 order 5 377 0 1 717964 1 Methylacidiphilaceae 4 family 375 0 genus 3 1 Methylacidiphilum 511745 1 0 374 591154 Methylacidiphilum fumariolicum 1 species 242 0 1 species 511746 Methylacidiphilum infernorum 0 131 0 3867 12 class 45 414999 1 Opitutae Opitutales 1 415000 69 order 7 3611 0 26 134623 1 Opitutaceae 6 family 3542 0 0 1291 genus 2 17 1 Lacunisphaera 1961799 1274 0 Lacunisphaera limnophila 1838286 species 1 1281 0 278955 no rank 1 species 1 Opitutaceae bacterium TAV5 794903 0 1281 genus 2 6 1 Opitutus 178440 0 944 938 0 107709 Opitutus terrae 1 species order 4 1 Puniceicoccales 415001 9 0 211 family 3 3 1 Puniceicoccaceae 415002 0 202 199 0 1 442430 1 Coraliomargarita 2 genus 198 0 Coraliomargarita akajimensis 395922 species 1 0 79 class 2 134549 genus 2 1 1 Candidatus Xiphinematobacter 134550 0 79 0 78 no rank 1 2648876 Candidatus Xiphinematobacter sp. Idaho Grape 1704307 species 1 78 0 3 phylum 256845 0 3669 3669 0 1 Lentisphaeria 1313211 22 class 3 0 3647 order 2 693 1 Victivallales 278082 2954 0 1674876 no rank 1 2954 0 2094242 Victivallales bacterium CCUG 44730 1 species phylum 5 134625 0 471 471 0 1921781 1 Kiritimatiellae 2 5 class 469 0 1921782 1 Kiritimatiellales 3 4 order 0 466 family 3 6 1 Kiritimatiellaceae 1921783 2 genus 4 1921784 1 Kiritimatiella 0 460 Kiritimatiella glycovorans 1307763 species 1 456 0 phylum 35 203682 0 9963 0 7331 24 class 54 203683 1 Planctomycetia 2691355 order 3 459 0 1914233 Gemmataceae 1 3 3 family 459 0 0 456 2 genus 1 113 Gemmata 1 455 0 2622970 no rank 1 Gemmata sp. SH-PL17 1630693 species 1 455 0 3607 0 112 1 Planctomycetales 144 10 order 1 Planctomycetaceae 126 15 family 9 3463 0 0 493 genus 1 1936111 Fuerstia marisgermanicae 1891926 species 1 493 0 2224 0 4 118 Planctomyces 1 3 genus 2220 0 2648843 2 no rank 1 species 1632864 Planctomyces sp. SH-PL14 0 853 species 1 Planctomyces sp. SH-PL62 1636152 0 1367 1649480 1 Planctopirus 18 2 genus 313 0 Planctopirus limnophila 120 species 1 295 0 418 0 1 Rubinisphaera 1649490 1 genus 2 417 0 119 Rubinisphaera brasiliensis 1 species 6 order 2691356 0 1994 6 family 1763524 Isosphaeraceae 1 23 0 1994 758 0 1763521 1 Paludisphaera 12 2 genus 746 0 1387353 Paludisphaera borealis 1 species 666 0 Isosphaera 1 127 5 genus 2 Isosphaera pallida 128 species 1 661 0 466152 1 genus 547 0 Singulisphaera acidiphila 466153 species 1 547 0 order 4 2691354 0 1217 3 family 2691357 0 701 genus 1 265488 0 531 species 1 Rhodopirellula baltica 265606 0 531 0 170 2 genus 1 123 1 Pirellula 1 species 125 Pirellula staleyi 0 169 516 0 2691358 1 family 0 516 1 genus 1676125 0 516 1 species 1331910 Thermogutta terrifontis 0 1747 7 class 666505 1 Phycisphaerae 27 666506 1 Phycisphaerales 21 4 order 797 0 776 0 666507 1 Phycisphaeraceae 4 3 family Phycisphaera 1 666508 2 genus 2 772 0 1 species 547188 Phycisphaera mikurensis 0 770 0 923 2 order 2483366 0 923 family 2 2483367 genus 2 2483368 0 923 1941349 Phycisphaerae bacterium ST-PulAB-D4 1 species 593 0 1940790 Phycisphaerae bacterium L21-RPul-D3 1 species 330 0 885 0 2517206 4 class 885 0 Candidatus Brocadiales 1 1127829 13 order 4 18 1127830 1 Candidatus Brocadiaceae 3 family 872 0 0 854 2 genus 1 380738 1 Candidatus Kuenenia 853 0 Candidatus Kuenenia stuttgartiensis 174633 species 1 2138240 3 phylum 408 0 class 3 2138243 0 408 408 0 2138246 1 Coprothermobacterales 1 3 order 2138247 2 family 407 0 2 genus 2 68335 1 Coprothermobacter 0 407 35786 Coprothermobacter proteolyticus 1 species 405 0 phylum 19 57723 0 7283 0 466 class 2 1 Blastocatellia 1562566 1 0 465 1 genus 458032 species 1 Chloracidobacterium thermophilum 458033 0 465 6817 0 26 1 Acidobacteriia 204432 class 17 1 Acidobacteriales 204433 28 order 12 5161 0 0 5133 family 11 42 1 Acidobacteriaceae 204434 904 0 Acidobacterium 1 33973 6 genus 2 33075 Acidobacterium capsulatum 1 species 898 0 3 genus 940557 Granulicella 1 8 0 1648 940615 Granulicella tundricola 1 species 562 0 1078 0 940614 Granulicella mallensis 1 species 856 0 6 658061 Candidatus Koribacter 1 2 genus 850 0 658062 Candidatus Koribacter versatilis 1 species 0 1683 3 genus 10 392733 1 Terriglobus species 1 Terriglobus roseus 392734 0 826 0 847 species 1 Terriglobus saanensis 870903 1630 0 37 Solibacterales 1 332160 order 4 0 1593 3 family 6 332161 Solibacteraceae 1 Candidatus Solibacter 1 332162 1 genus 2 1587 0 species 1 Candidatus Solibacter usitatus 332163 0 1586 30189 0 200918 40 phylum 40 class 24 188708 1 Thermotogae 0 30189 order 28 2 1 Thermotogales 2419 0 16421 10 family 30 1643950 1 Fervidobacteriaceae 0 9809 0 2708 4 genus 1 2422 1 Fervidobacterium 0 972 species 1 Fervidobacterium nodosum 2424 863 0 93466 Fervidobacterium pennivorans 1 species 872 0 Fervidobacterium islandicum 2423 species 1 53 Thermosipho 1 2420 genus 5 7071 0 1495 0 2421 Thermosipho africanus 1 species no rank 2 2676525 0 2796 1 species 1437364 Thermosipho sp. 1070 0 1403 1393 0 1462747 Thermosipho sp. 1063 1 species 0 2727 1 species 46541 Thermosipho melanesiensis 5 1 Thermotogaceae 188709 family 17 6610 0 4344 0 41 Thermotoga 1 2335 genus 11 0 960 1 species 2336 Thermotoga maritima 0 420 1 species 93930 Thermotoga naphthophila 93929 Thermotoga petrophila 1 species 396 0 2631113 4 no rank 1408 0 431 0 Thermotoga sp. 2812B 1157948 species 1 185 0 1157947 Thermotoga sp. Cell2 1 species 0 505 species 1 Thermotoga sp. RQ7 126738 0 287 species 1 Thermotoga sp. RQ2 126740 Thermotoga neapolitana 2337 species 1 537 0 217 0 Thermotoga caldifontis 1508419 species 1 0 365 1 species 1508420 Thermotoga profunda 5 genus 30 1643951 1 Pseudothermotoga 0 2261 57487 Pseudothermotoga hypogea 1 species 386 0 species 1 Pseudothermotoga lettingae 177758 0 731 Pseudothermotoga elfii 38322 species 1 714 0 0 400 species 1 Pseudothermotoga thermarum 119394 1643946 4 order 1935 0 1935 0 1643948 4 family 0 445 2 genus 1184396 1 Mesotoga 1 0 444 species 1 Mesotoga prima 1184387 genus 2 651456 0 1490 1 species 651457 Kosmotoga olearia 0 421 1069 0 Kosmotoga pacifica 1330330 species 1 0 11809 order 7 3 1 Petrotogales 1643947 1643949 6 family 11806 0 1091 0 1 28236 Petrotoga 1 2 genus species 1 Petrotoga mobilis 69499 0 1090 2837 0 1511648 1 genus species 1 Defluviitoga tunisiensis 1006576 0 2837 7878 0 160798 1 Marinitoga 10 3 genus 1 species 149715 Marinitoga piezophila 0 3922 0 3946 1 no rank 2640159 0 3946 species 1 Marinitoga sp. 1137 1545835 0 9939 phylum 23 200783 0 9939 class 23 Aquificae 1 187857 7 5 order 1485951 0 3259 5 family 7 558314 1 Desulfurobacteriaceae 0 3259 0 380 2 genus 171868 Thermovibrio 1 1 Thermovibrio ammonificans 228745 species 1 379 0 64159 Desulfurobacterium 1 1 2 genus 2872 0 2871 0 Desulfurobacterium thermolithotrophum 64160 species 1 6673 0 3 Aquificales 1 32069 order 17 3720 0 224027 1 Hydrogenothermaceae 8 5 family 182899 1 genus 837 0 309805 Persephonella marina 1 species 837 0 0 2875 3 genus 212790 1 Sulfurihydrogenibium 1 2619248 1 no rank 2088 0 0 2088 species 1 Sulfurihydrogenibium sp. YO3AOP1 436114 309806 Sulfurihydrogenibium azorense 1 species 786 0 479 0 90150 1 no rank 479 0 412592 1 genus species 1 Thermosulfidibacter takaii 412593 0 479 2471 0 64898 family 10 genus 1 2713 0 298 0 298 1 species 63363 Aquifex aeolicus Hydrogenobaculum 1 168657 59 genus 6 1842 0 0 1783 no rank 5 2622382 0 463 1 species 380749 Hydrogenobaculum sp. Y04AAS1 547145 Hydrogenobaculum sp. SHO 1 species 330 0 547144 Hydrogenobaculum sp. HO 1 species 330 0 547146 Hydrogenobaculum sp. SN 1 species 330 0 0 330 1 species 547143 Hydrogenobaculum sp. 3684 genus 1 939 0 101 Hydrogenobacter thermophilus 940 species 1 101 0 230 0 75905 2 genus 0 90 species 1 Thermocrinis albus 136094 0 140 species 1 Thermocrinis ruber 75906 78779 0 203691 phylum 58 78779 0 203692 Spirochaetia 1 87 58 class 1 Spirochaetales 136 444 order 42 33983 0 137 Spirochaetaceae 1 288 24 family 23417 0 genus 2 1 Sediminispirochaeta 1911556 4 0 989 985 0 Sediminispirochaeta smaragdinae 55206 species 1 904 0 2 1616789 1 Salinispira 2 genus 902 0 Salinispira pacifica 1307761 species 1 0 1918 3 genus 7 146 Spirochaeta 1 0 1154 1 species 46355 Spirochaeta africana Spirochaeta thermophila 154 species 1 757 0 4 genus 399320 1 Sphaerochaeta 20 0 3035 species 1 Sphaerochaeta coccoides 273376 0 1053 Sphaerochaeta pleomorpha 1131707 species 1 886 0 species 1 Sphaerochaeta globosa 1131703 0 1076 0 16283 12 genus 282 157 Treponema 1 Treponema paraluiscuniculi 53435 species 1 63 0 species 1 Treponema denticola 158 0 1108 215591 Treponema caldarium 1 species 1024 0 1 species 150829 Treponema azotonutricium 0 997 0 1958 1 no rank 2638727 species 1 Treponema sp. OMZ 838 1539298 0 1958 species 1 Treponema putidum 221027 0 3640 1422 0 Treponema brennaborense 81028 species 1 0 957 species 1 Treponema primitia 88058 0 674 species 1 Treponema pedis 409322 Treponema succinifaciens 167 species 1 4092 0 Treponema pallidum 160 species 1 66 0 0 10122 family 17 1 Borreliaceae 1643685 3 187 1 Borreliella 64895 genus 8 4139 0 0 766 1 species 29519 Borreliella garinii 230 0 664662 Borreliella bavariensis 1 species species 1 Borreliella burgdorferi 139 0 693 species 1 Borreliella valaisiana 62088 0 809 0 328 1 species 64897 Borreliella bissettii 520 0 1674146 Borrelia mayonii 1 species 606 0 Borreliella afzelii 29518 species 1 5980 0 138 Borrelia 1 106 8 genus 906 0 Borrelia recurrentis 44449 species 1 950 0 47466 Borrelia miyamotoi 1 species 0 517 1 species 141 Borrelia parkeri 1670 0 40834 Borrelia duttonii 1 species Borrelia hermsii 140 species 1 525 0 1 species 143 Borrelia anserina 0 550 756 0 Borrelia turicatae 142 species 1 order 8 1643688 0 4906 0 4906 8 family 170 Leptospiraceae 1 2 214 0 338321 1 genus 214 0 29510 Turneriella parva 1 species 0 4690 6 genus 6 171 Leptospira 1 1 species 172 Leptospira biflexa 0 810 904 0 Leptospira borgpetersenii 174 species 1 1 species 28452 Leptospira alstonii 0 272 2284 0 Leptospira interrogans 173 species 1 414 0 Leptospira santarosai 28183 species 1 39803 0 1643686 1 Brachyspirales 2 7 order 143786 1 Brachyspiraceae 6664 6 family 39801 0 33137 0 29521 1 Brachyspira 6242 5 genus 4577 0 Brachyspira intermedia 84377 species 1 1 species 52584 Brachyspira pilosicoli 0 11930 Brachyspira hyodysenteriae 159 species 1 6159 0 4229 0 84378 Brachyspira murdochii 1 species 6191 0 200930 8 phylum 8 class 4 68337 1 Deferribacteres 0 6191 6187 0 1 1 Deferribacterales 191393 order 7 0 6186 family 6 1 Deferribacteraceae 191394 14 659 0 2351 1 genus 2352 Flexistipes sinusarabici 1 species 659 0 1378 0 545865 genus 1 0 1378 species 1 Calditerrivibrio nitroreducens 477976 0 3128 2 genus 2 53572 1 Deferribacter 3126 0 Deferribacter desulfuricans 197162 species 1 1 genus 117999 0 1007 0 1007 1 species 118000 Denitrovibrio acetiphilus 40117 12 phylum 4304 0 0 4304 class 12 Nitrospira 1 203693 7 0 4297 order 11 1 Nitrospirales 189778 19 0 4278 family 10 1 Nitrospiraceae 189779 6 812 0 179 genus 3 1 species group 261385 0 218 218 0 1660083 Leptospirillum sp. Group II 'CF-1' 1 species species group 1 261386 0 409 409 0 178606 Leptospirillum ferriphilum 1 species 185 0 655606 species group 1 1 species 180 Leptospirillum ferrooxidans 0 185 2186 0 Nitrospira 1 1234 3 genus 5 Nitrospira defluvii 330214 species 1 518 0 species 1 Nitrospira moscoviensis 42253 0 683 472 0 Nitrospira japonica 1325564 species 1 species 1 Candidatus Nitrospira inopinata 1715989 0 510 1274 0 28261 1 genus 1274 0 28262 Thermodesulfovibrio yellowstonii 1 species 1930617 phylum 2 1104 0 1962850 class 2 1104 0 order 2 1962852 0 1104 0 1104 family 2 1962854 2 genus 187144 Caldithrix 1 3 0 1104 1101 0 187145 Caldithrix abyssi 1 species phylum 5 68297 0 3490 203486 5 class 3490 0 order 5 1 Dictyoglomales 203487 1 0 3490 203488 1 Dictyoglomaceae 1 4 family 3489 0 0 3488 3 genus 3 13 1 Dictyoglomus 0 2138 species 1 Dictyoglomus turgidum 513050 1 species 14 Dictyoglomus thermophilum 0 1347 1783272 clade 1694 11620800 0 0 451 4 phylum 67819 1663419 class 4 451 0 451 0 2 Fimbriimonadales 1 1663425 order 4 1 Fimbriimonadaceae 1663426 7 family 3 449 0 0 442 genus 2 2 1 Fimbriimonas 1005038 Fimbriimonas ginsengisoli 1005039 species 1 440 0 phylum 45 2 Chloroflexi 1 200795 0 14119 0 1026 7 class 189775 Thermomicrobia 1 24 subclass 4 85000 0 771 order 4 8 Sphaerobacterales 1 85001 0 771 3 suborder 255728 0 763 family 3 5 Sphaerobacteraceae 1 85002 0 763 758 0 14 2056 Sphaerobacter 1 2 genus 744 0 Sphaerobacter thermophilus 2057 species 1 2 order 189776 0 231 189777 family 2 231 0 0 231 2 genus 1 499 1 Thermomicrobium 0 230 1 species 500 Thermomicrobium roseum 3910 0 67 301297 1 Dehalococcoidia 8 class 0 1104 genus 3 Dehalogenimonas 1 670486 17 1839801 Dehalogenimonas formicexedens 1 species 589 0 0 498 species 1 Dehalogenimonas lykanthroporepellens 552810 1202465 order 4 2739 0 family 4 1 Dehalococcoidaceae 1202464 3 0 2739 0 2736 3 genus 1 61434 Dehalococcoides 1 61435 Dehalococcoides mccartyi 1 species 2071 0 1 no rank 237581 0 664 0 664 1 species 1522671 Dehalococcoides sp. UCH007 2493 0 24 1 Ardenticatenia 1382928 class 5 2469 0 19 1382929 Ardenticatenales 1 4 order 0 2450 3 family 1382930 1 Ardenticatenaceae 7 0 2443 genus 2 1 Candidatus Promineofilum 1988031 5 1806508 Candidatus Promineofilum breve 1 species 2438 0 821 0 2 1 Caldilineae 475962 class 5 order 4 7 1 Caldilineales 475963 0 819 family 3 1 Caldilineaceae 1 475964 0 812 2 genus 29 233191 1 Caldilinea 0 811 1 species 133453 Caldilinea aerophila 0 782 2960 0 32061 Chloroflexia 1 9 11 class 10 order 32064 Chloroflexales 1 1 0 2951 0 1286 5 suborder 1508594 1286 0 2 1106 1 Chloroflexaceae 5 family 0 1284 genus 4 1 Chloroflexus 1107 32 species 1 Chloroflexus aggregans 152260 0 340 Chloroflexus aurantiacus 1 1108 456 species 2 912 0 480224 Chloroflexus sp. Y-400-fl 1 strain 456 0 1664 0 1508595 suborder 4 1664 0 1508635 1 Roseiflexaceae 1 4 family 0 1663 3 genus 2 120961 Roseiflexus 1 0 542 1 species 120962 Roseiflexus castenholzii no rank 1 2609473 0 1119 species 1 Roseiflexus sp. RS-1 357808 0 1119 8 class 292625 Anaerolineae 1 16 0 2907 4 1 Anaerolineales 292629 order 7 2891 0 2887 0 6 1 Anaerolineaceae 292628 family 6 1 no rank 1324991 0 1177 1889813 Anaerolineaceae bacterium oral taxon 439 1 species 1177 0 genus 2 Anaerolinea 1 233189 1 0 1206 1205 0 Anaerolinea thermophila 167964 species 1 498 0 2 1 Brevefilum 2019482 genus 2 496 0 Brevefilum fermentans 1986204 species 1 no rank 2 1859062 0 441 441 0 Thermobaculum 1 262406 30 genus 2 1 species 166501 Thermobaculum terrenum 0 411 36 phylum 1297 0 20498 20498 0 148 188787 1 Deinococci 36 class order 3 2762275 0 578 332247 1 Trueperaceae 3 3 family 578 0 genus 2 1 Truepera 332248 7 0 575 568 0 332249 Truepera radiovictrix 1 species order 15 139 Deinococcales 1 118964 0 12352 0 12213 family 14 Deinococcaceae 1 183710 44 Deinococcus 1 1298 300 genus 13 12169 0 1182571 Deinococcus swuensis 1 species 1395 0 724 0 Deinococcus maricopensis 309887 species 1 1182568 Deinococcus puniceus 1 species 1008 0 68909 Deinococcus geothermalis 1 species 763 0 Deinococcus peraridilitoris 432329 species 1 538 0 species 1 Deinococcus radiodurans 1299 0 770 1 species 1768108 Deinococcus actinosclerus 0 1142 Deinococcus deserti 310783 species 1 847 0 0 1468 1 species 55148 Deinococcus proteolyticus 0 811 no rank 1 2623546 Deinococcus sp. NW-56 2080419 species 1 811 0 502394 Deinococcus gobiensis 1 species 1368 0 0 1035 species 1 Deinococcus soli Cha et al. 2016 1309411 17 order 68933 Thermales 1 81 0 7420 16 family 48 188786 1 Thermaceae 0 7339 539 0 4 Marinithermus 1 186191 genus 2 0 535 species 1 Marinithermus hydrothermalis 186192 0 1487 3 genus 65551 1 Meiothermus 6 723 0 Meiothermus ruber 277 species 1 0 758 species 1 Meiothermus silvanus 52022 genus 2 1 Oceanithermus 208447 12 0 828 1 species 187137 Oceanithermus profundus 0 816 genus 8 96 1 Thermus 270 0 4437 708 0 37636 Thermus scotoductus 1 species 1 species 56957 Thermus oshimai 0 662 species 1 Thermus parvatiensis 456163 0 686 species 1 Thermus brockianus 56956 0 313 518 0 Thermus aquaticus 271 species 1 305 0 2619321 1 no rank 1111069 Thermus sp. CCB_US3_UF1 1 species 305 0 1149 0 274 Thermus thermophilus 1 species 0 109307 clade 142 1798711 109307 0 1117 Cyanobacteria 1 17 142 phylum 2 order 1890505 0 224 0 224 2 family 1890528 genus 2 Chroococcidiopsis 1 54298 1 0 224 0 223 species 1 Chroococcidiopsis thermalis 54299 6 class 307596 1 Gloeobacteria 8 0 1447 307595 1 Gloeobacterales 38 5 order 1439 0 family 4 1 Gloeobacteraceae 1890422 29 0 1401 1372 0 20 Gloeobacter 1 33071 genus 3 33072 Gloeobacter violaceus 1 species 771 0 581 0 Gloeobacter kilaueensis 1416614 species 1 0 41326 31 order 44 1161 Nostocales 1 2810 0 6 1185 Rivulariaceae 1 3 family 2 genus 373984 Rivularia 1 1 0 2804 2676603 no rank 1 2803 0 0 2803 1 species 373994 Rivularia sp. PCC 7116 1111 0 1892263 1 family 1111 0 1190 genus 1 1111 0 494603 no rank 1 1111 0 Fischerella sp. NIES-3754 1752063 species 1 1706 0 1219117 no rank 1 Nostocales cyanobacterium HT-58-2 1940762 species 1 1706 0 2661849 family 8 9105 0 0 9105 8 genus 164 1186 1 Calothrix no rank 6 2619626 0 7903 1437 0 1337936 Calothrix sp. 336/3 1 species 1324 0 Calothrix sp. NIES-3974 2005462 species 1 1167 0 Calothrix sp. NIES-2098 1954171 species 1 1 species 2005461 Calothrix sp. NIES-4101 0 1024 2289 0 2005469 Calothrix sp. NIES-4071 1 species 0 662 1 species 99598 Calothrix sp. PCC 7507 1 species 32054 Calothrix parietina 0 1038 26550 0 1162 Nostocaceae 1 17 17 family 0 5823 4 genus 169 1163 1 Anabaena no rank 2 2619674 0 2778 1424 0 1647413 Anabaena sp. WA102 1 species 46234 Anabaena sp. 90 1 species 1354 0 Anabaena cylindrica 1165 species 1 2876 0 0 1712 2 genus 264688 1152 0 Trichormus variabilis 264691 species 1 560 0 Trichormus azollae 1164 species 1 0 18998 10 genus 1177 1 Nostoc 179 species 1 Nostoc punctiforme 272131 0 2866 12949 0 2593658 7 no rank species 1 Nostoc sp. PCC 7107 317936 0 1187 0 2460 species 1 Nostoc sp. CENA543 1869241 species 1 Nostoc sp. NIES-3756 1751286 0 1863 species 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 0 1573 species 1 Nostoc sp. PCC 7120 103690 0 703 1 species 1261031 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 0 3298 0 1865 1 species 28072 Nostoc sp. PCC 7524 0 3004 species 1 Nostoc flagelliforme 1306274 56 order 1890424 1 Synechococcales 212 0 35198 0 1234 family 2 1890429 genus 2 Acaryochloris 1 155977 1 0 1234 0 1233 species 1 Acaryochloris marina 155978 0 211 family 3 1 Pseudanabaenaceae 1890436 2 2 genus 1152 1 Pseudanabaena 3 0 209 no rank 1 2593292 0 206 Pseudanabaena sp. PCC 7367 82654 species 1 206 0 3567 0 1 Leptolyngbyaceae 1890438 31 family 6 3536 0 47251 1 Leptolyngbya 2 5 genus 0 931 1 species 1184 Leptolyngbya boryana 2650499 3 no rank 2603 0 1101 0 Leptolyngbya sp. NIES-3755 1752064 species 1 1 species 111781 Leptolyngbya sp. PCC 7376 0 297 species 1 Leptolyngbya sp. O-77 1080068 0 1205 Prochloraceae 1 1213 5 family 5 8380 0 8375 0 15 1 Prochlorococcus 1218 genus 4 2 no rank 2627481 0 1327 648 0 Prochlorococcus sp. MIT 0604 1501268 species 1 679 0 1501269 Prochlorococcus sp. MIT 0801 1 species 0 7033 1 species 1219 Prochlorococcus marinus 2303730 family 2 453 0 2 genus 170610 Halomicronema 1 1 0 453 1209493 Halomicronema hongdechloris 1 species 452 0 1521 0 1 Merismopediaceae 1890428 4 family 5 44 1 Synechocystis 1142 genus 4 1517 0 no rank 3 2640012 0 1473 1 species 1148 Synechocystis sp. PCC 6803 0 601 0 271 species 1 Synechocystis sp. PCC 6714 1147 species 1 Synechocystis sp. IPPAS B-1465 2116702 0 601 0 19620 32 family 106 1890426 1 Synechococcaceae 146785 genus 1 282 0 Thermosynechococcus elongatus 146786 species 1 282 0 622 0 13034 genus 1 622 0 292566 Dactylococcopsis salina 1 species 142 1 Synechococcus 1129 genus 26 16128 0 2188 0 33070 Synechococcus lividus 1 species 0 13578 23 no rank 2626047 195253 Synechococcus sp. PCC 6312 1 species 432 0 833 0 Synechococcus sp. PCC 8807 195248 species 1 species 1 Synechococcus sp. CC9311 64471 0 1141 29410 Synechococcus sp. WH 8103 1 species 516 0 0 213 species 1 Synechococcus sp. KORDI-100 1280380 654 0 Synechococcus sp. RCC307 316278 species 1 1 species 32049 Synechococcus sp. PCC 7002 0 570 0 929 species 1 Synechococcus sp. JA-3-3Ab 321327 374981 Synechococcus sp. PCC 7003 1 species 380 0 0 870 1 species 374982 Synechococcus sp. PCC 73109 410 0 Synechococcus sp. CC9605 110662 species 1 Synechococcus sp. JA-2-3B'a(2-13) 321332 species 1 580 0 species 1 Synechococcus sp. SynAce01 1916956 0 348 889 0 Synechococcus sp. NIES-970 1827144 species 1 0 652 species 1 Synechococcus sp. WH 8102 84588 0 413 species 1 Synechococcus sp. KORDI-52 585425 32051 Synechococcus sp. WH 7803 1 species 414 0 species 1 Synechococcus sp. CC9902 316279 0 419 1 species 585423 Synechococcus sp. KORDI-49 0 308 1367 0 1173263 Synechococcus sp. PCC 7502 1 species 342 0 Synechococcus sp. WH 8109 166314 species 1 species 1 Synechococcus sp. PCC 7117 195498 0 694 0 204 species 1 Synechococcus sp. UTEX 2973 1350461 0 220 species 1 Synechococcus elongatus 32046 2482 0 17 167375 Cyanobium 1 3 genus no rank 1 2627006 0 1469 Cyanobium sp. NIES-981 1851505 species 1 1469 0 0 996 species 1 Cyanobium gracile 59930 0 4629 6 order 52604 Pleurocapsales 1 2 4 family 1890498 1 Dermocarpellaceae 9 0 3835 9 1 Stanieria 102115 genus 3 3826 0 0 1479 species 1 Stanieria cyanosphaera 102116 1 no rank 2642663 0 2338 0 2338 1 species 1807358 Stanieria sp. NIES-3757 0 792 1 family 1890500 44474 genus 1 792 0 1 species 54308 Pleurocapsa minor 0 792 372 0 1983111 1 no rank 0 372 1 species 718217 cyanobacterium endosymbiont of Epithemia turgida 1301283 subclass 39 26094 0 0 17009 order 22 1 Chroococcales 1118 14 5 1890464 1 Chroococcaceae 7 family 6539 0 3 genus 2 669357 Geminocystis 1 0 4671 2 no rank 2625037 0 4669 Geminocystis sp. NIES-3708 1615909 species 1 2489 0 1 species 1617448 Geminocystis sp. NIES-3709 0 2180 0 500 2 genus 1 102231 Gloeocapsa 1 2623012 1 no rank 499 0 1173026 Gloeocapsa sp. PCC 7428 1 species 499 0 1363 0 268175 1 genus 2648896 no rank 1 1363 0 1 species 2005460 Chondrocystis sp. NIES-4102 0 1363 2 1890450 1 Aphanothecaceae 8 family 7227 0 263510 genus 1 985 0 985 0 2546360 species 1 985 0 Cyanothece sp. ATCC 51142 43989 strain 1 genus 1 1453359 0 655 713887 Candidatus Atelocyanobacterium thalassa 1 species 655 0 2 genus 28070 0 3679 species 1 2546356 0 2757 65393 Cyanothece sp. PCC 7424 1 strain 2757 0 2546359 species 1 922 0 0 922 1 strain 497965 Cyanothece sp. PCC 7822 2 genus 2546365 0 1243 2 species 2546366 0 1243 817 0 41431 Cyanothece sp. PCC 8801 1 strain strain 1 Cyanothece sp. PCC 8802 395962 0 426 1 no rank 92682 0 663 76023 1 genus 663 0 663 0 2632878 1 no rank 663 0 Halothece sp. PCC 7418 65093 species 1 2 1890449 Microcystaceae 1 4 family 1689 0 3 genus 9 1125 Microcystis 1 0 1687 1070 0 1126 Microcystis aeruginosa 1 species 0 608 1 no rank 2643300 608 0 Microcystis sp. MC19 1967666 species 1 3 1890452 1 Cyanobacteriaceae 2 family 1540 0 0 1537 genus 1 102234 1537 0 379064 Cyanobacterium aponinum 1 species 9085 0 Oscillatoriales 1 1150 20 order 17 1892251 1 family 958 0 genus 1 63132 0 958 2648775 no rank 1 958 0 Geitlerinema sp. PCC 7407 1173025 species 1 958 0 1 1892255 1 Gomontiellaceae 3 family 1382 0 2 genus 241421 Crinalium 1 1 0 1381 species 1 Crinalium epipsammum 241425 0 1380 1892252 1 Microcoleaceae 3 4 family 3401 0 1896 0 1205 1 genus 1 species 1206 Trichodesmium erythraeum 0 1896 genus 2 1 Microcoleus 44471 2 0 1502 0 1500 1 no rank 2642155 species 1 Microcoleus sp. PCC 7113 1173027 0 1500 649 0 3 1 Cyanothecaceae 1892249 family 3 0 646 2 genus 27 43988 Cyanothece 1 2649277 no rank 1 619 0 619 0 Cyanothece sp. PCC 7425 395961 species 1 1892254 1 Oscillatoriaceae 8 5 family 2675 0 2 genus 1 1155738 Moorea 1 0 795 0 794 1 species 1155739 Moorea producens 1872 0 1158 2 genus 0 1325 1 species 118323 Oscillatoria acuminata 0 547 1 species 482564 Oscillatoria nigro-viridis 0 2277753 phylum 646 Actinobacteria 1 201174 42 4 no rank 1752188 0 1589 1848756 Actinobacteria bacterium IMCC26103 1 species 413 0 732 0 1848754 Actinobacteria bacterium IMCC19121 1 species 0 164 species 1 Actinobacteria bacterium IMCC26077 1848755 1 species 1848255 Actinobacteria bacterium IMCC25003 0 280 class 6 1 1 Acidimicrobiia 84992 0 873 872 0 84993 1 Acidimicrobiales 30 5 order 131 0 Acidimicrobiaceae 1 84994 6 family 2 53634 genus 1 125 0 125 0 Acidimicrobium ferrooxidans 53635 species 1 711 0 2448023 2 family genus 2 1 Ilumatobacter 682522 5 0 711 706 0 Ilumatobacter coccineus 467094 species 1 473 84998 1 Coriobacteriia 30 class 586293 0 50229 0 1 Eggerthellales 1643822 556 order 16 family 15 Eggerthellaceae 1 1643826 4484 0 49673 1024 0 1 Cryptobacterium 84162 4 genus 2 84163 Cryptobacterium curtum 1 species 1020 0 18234 0 69 644652 1 Gordonibacter 3 genus Gordonibacter massiliensis 1841863 species 1 4988 0 1 species 1335613 Gordonibacter urolithinfaciens 0 13177 genus 3 71 1 Eggerthella 84111 0 9434 6759 0 84112 Eggerthella lenta 1 species 1 no rank 2648737 0 2604 Eggerthella sp. YY7918 502558 species 1 2604 0 0 6129 2 genus 1 447020 1 Adlercreutzia 446660 Adlercreutzia equolifaciens 1 species 6128 0 0 5749 genus 2 5 Slackia 1 84108 5744 0 Slackia heliotrinireducens 84110 species 1 1 genus 79603 0 2319 79604 Denitrobacterium detoxificans 1 species 2319 0 2300 0 1981050 1 genus 0 2300 species 1 Phoenicibacter massiliensis 1944646 0 535591 order 13 330 1 Coriobacteriales 84999 family 6 1 Coriobacteriaceae 84107 792 0 517699 0 2751 1 no rank 84113 species 1 Coriobacteriaceae bacterium 68-1-3 1531429 0 2751 0 511962 2 genus 102106 1 Collinsella 26 511936 0 74426 Collinsella aerofaciens 1 species genus 2 2 Coriobacterium 1 33870 0 2194 0 2192 species 1 Coriobacterium glomerans 33871 17562 0 209 1 Atopobiaceae 1643824 family 6 4 genus 61 133925 Olsenella 1 0 13347 0 6241 1 species 1805478 Olsenella sp. Marseille-P2300 0 2929 no rank 1 2638792 712411 Olsenella sp. oral taxon 807 1 species 2929 0 4116 0 133926 Olsenella uli 1 species 0 4006 genus 1 2767353 1382 Atopobium parvulum 1 species 4006 0 0 1010 class 4 1497346 order 4 32 Solirubrobacterales 1 588673 0 1010 family 3 1 Conexibacteraceae 320583 2 0 978 18 191494 1 Conexibacter 2 genus 976 0 species 1 Conexibacter woesei 191495 0 958 1686850 0 4192 1760 1 Actinobacteria 595 class 145 order 611 85006 1 Micrococcales 0 69814 1019 0 14 85019 Brevibacteriaceae 1 3 family 0 1005 2 genus 22 1696 Brevibacterium 1 0 983 species 1 Brevibacterium linens 1703 3583 0 1 Promicromonosporaceae 85017 47 family 9 3 genus 254250 Isoptericola 1 14 0 1558 1 species 139208 Isoptericola variabilis 0 725 species 1 Isoptericola dokdonensis 372663 0 819 Xylanimonas 1 186188 14 genus 2 783 0 769 0 186189 Xylanimonas cellulosilytica 1 species 1195 0 157920 1 Cellulosimicrobium 10 3 genus 1 species 1710 Cellulosimicrobium cellulans 0 589 0 596 1 no rank 2624466 1 species 1980001 Cellulosimicrobium sp. TH-20 0 596 17987 0 173 Microbacteriaceae 1 85023 family 47 0 513 3 genus 7 33886 Rathayibacter 1 362 0 Rathayibacter tritici 33888 species 1 145458 Rathayibacter toxicus 1 species 144 0 0 6671 14 genus 33882 Microbacterium 1 150 0 3846 8 no rank 2609290 0 615 species 1 Microbacterium sp. BH-3-3-3 1906742 Microbacterium sp. 1.5R 1916917 species 1 347 0 species 1 Microbacterium sp. CGR1 1696072 0 317 Microbacterium sp. str. 'China' 2103230 species 1 561 0 0 425 species 1 Microbacterium sp. No. 7 1714373 0 292 1 species 1938334 Microbacterium sp. TPU 3598 0 594 species 1 Microbacterium sp. XT11 367477 695 0 Microbacterium sp. PAMC 28756 1795053 species 1 0 801 1 species 36805 Microbacterium aurum 0 651 species 1 Microbacterium hominis 162426 species 1 Microbacterium chocolatum 84292 0 387 2033 Microbacterium testaceum 1 species 370 0 300019 Microbacterium paludicola 1 species 466 0 1 1 Pontimonas 1434032 genus 2 384 0 0 383 1 species 1159327 Pontimonas salivibrio 0 1497 4 genus 2034 1 Curtobacterium 14 951 0 257496 no rank 2 517 0 Curtobacterium sp. MR_MD2014 1561023 species 1 0 434 1 species 1905847 Curtobacterium sp. BH-2-1-1 0 532 1 species 69373 Curtobacterium pusillum 639 0 1759331 genus 1 0 639 1 species 1619308 Cnuibacter physcomitrellae 499 0 4 518733 1 Microterricola 2 genus species 1 Microterricola viridarii 412690 0 495 1705353 genus 1 248 0 708131 Aurantimicrobium minutum 1 species 248 0 genus 2 Frondihabitans 1 447237 2 0 647 2626248 1 no rank 645 0 645 0 Frondihabitans sp. PAMC 28766 1795630 species 1 2 genus 33877 Agromyces 1 1 0 754 species 1 Agromyces aureus 453304 0 753 0 1312 genus 2 1 Leifsonia 110932 2 1 species 1575 Leifsonia xyli 0 1310 genus 6 Clavibacter 1 1573 149 0 2130 Clavibacter michiganensis 1 28447 447 species 5 1981 0 208 0 33014 Clavibacter insidiosus 1 subspecies 1 subspecies 31964 Clavibacter sepedonicus 0 536 274 0 31963 Clavibacter nebraskensis 1 subspecies 0 516 subspecies 1 Clavibacter capsici 1874630 33 1 Cryobacterium 69578 genus 3 1669 0 0 890 no rank 1 2649013 1 species 1978566 Cryobacterium sp. LW097 0 890 746 0 670052 Cryobacterium arcticum 1 species 1655488 2 no rank 564 0 564 0 1655489 clade 2 genus 2 529883 0 564 0 237 species 1 Rhodoluna lacicola 529884 0 327 species 1 Candidatus Rhodoluna planktonica 535712 genus 2 1 Microcella 337004 2 0 287 1 species 279828 Microcella alkaliphila 0 285 489 0 85018 family 2 0 489 genus 2 2 Dermatophilus 1 1862 487 0 Dermatophilus congolensis 1863 species 1 0 31491 family 40 1 Micrococcaceae 1268 1179 1 Glutamicibacter 1742989 5 genus 2 1232 0 species 1 Glutamicibacter arilaitensis 256701 0 1227 1 Sinomonas 596707 4 genus 2 618 0 species 1 Sinomonas atrocyanea 37927 0 614 0 2360 4 genus 36 1742993 Pseudarthrobacter 1 85085 Pseudarthrobacter chlorophenolicus 1 species 877 0 685 0 Pseudarthrobacter phenanthrenivorans 361575 species 1 0 762 1 species 121292 Pseudarthrobacter sulfonivorans 1 genus 2078575 0 933 933 0 1618207 Arthrobacter sp. IHBB 11108 1 species 547 0 1742992 1 Paenarthrobacter 5 2 genus 43663 Paenarthrobacter aurescens 1 species 542 0 0 6938 genus 3 10 1 Rothia 32207 0 743 1 species 2047 Rothia dentocariosa Rothia mucilaginosa 43675 species 1 6185 0 genus 2 1 Renibacterium 1 1645 0 240 1 species 1646 Renibacterium salmoninarum 0 239 60 Kocuria 1 57493 genus 4 2477 0 species 1 Kocuria rhizophila 72000 0 869 446860 Kocuria flava 1 species 816 0 species 1 Kocuria palustris 71999 0 732 417 1663 1 Arthrobacter 15 genus 12498 0 9069 0 235627 12 no rank 0 470 species 1 Arthrobacter sp. ATCC 21022 1771959 0 627 species 1 Arthrobacter sp. PGP41 2079227 644 0 1118963 Arthrobacter sp. Rue61a 1 species 290399 Arthrobacter sp. FB24 1 species 818 0 1535 0 Arthrobacter sp. LS16 1690248 species 1 776 0 1494608 Arthrobacter sp. PAMC 25486 1 species 0 615 species 1 Arthrobacter sp. QXT-31 1357915 1652545 Arthrobacter sp. YC-RL1 1 species 1098 0 0 448 1 species 1806905 Arthrobacter sp. ZXY-2 Arthrobacter sp. ERGS1:01 1704044 species 1 645 0 Arthrobacter sp. YN 2020486 species 1 655 0 738 0 1849032 Arthrobacter sp. U41 1 species species 1 Arthrobacter crystallopoietes 37928 0 1388 1624 0 Arthrobacter alpinus 656366 species 1 0 1102 genus 2 9 Micrococcus 1 1269 0 1093 species 1 Micrococcus luteus 1270 0 1367 genus 2 4 1 Neomicrococcus 1868332 species 1 Neomicrococcus aestuarii 556325 0 1363 0 1938 7 family 145357 1 Dermacoccaceae 13 0 785 2 genus 4 745364 1 Luteipulveratus species 1 Luteipulveratus mongoliensis 571913 0 781 0 472 2 genus 3 57495 1 Dermacoccus 469 0 Dermacoccus nishinomiyaensis 1274 species 1 668 0 17 57499 1 Kytococcus 2 genus 1 species 1276 Kytococcus sedentarius 0 651 500 0 1 1 Beutenbergiaceae 125316 family 3 0 499 genus 2 4 Beutenbergia 1 84756 0 495 1 species 84757 Beutenbergia cavernae 1030 0 8 145360 1 Sanguibacteraceae 3 family 2 genus 60919 1 Sanguibacter 11 0 1022 1011 0 Sanguibacter keddieii 60920 species 1 4 85022 Jonesiaceae 1 3 family 413 0 0 409 2 genus 43673 Jonesia 1 19 0 390 species 1 Jonesia denitrificans 43674 6 family 16 85016 Cellulomonadaceae 1 0 3018 55 1 Cellulomonas 1707 genus 5 3002 0 724 0 Cellulomonas gilvus 11 species 1 1006 0 1711 Cellulomonas flavigena 1 species Cellulomonas fimi 1708 species 1 709 0 0 508 1 no rank 2620175 2003551 Cellulomonas sp. PSBB021 1 species 508 0 220 0 577468 1 no rank 2038 genus 1 220 0 2039 Tropheryma whipplei 1 species 220 0 5096 0 52 1 Dermabacteraceae 85020 family 11 0 418 genus 2 2 Dermabacter 1 36739 416 0 Dermabacter vaginalis 1630135 species 1 1 472568 1 Devriesea 2 genus 279 0 0 278 species 1 Devriesea agamarum 472569 87 Brachybacterium 1 43668 genus 6 4347 0 884 0 Brachybacterium sp. VM2412 2017484 species 1 0 979 species 1 Brachybacterium ginsengisoli 1331682 1 no rank 2623841 0 738 1 species 1903186 Brachybacterium sp. P6-10-X1 0 738 Brachybacterium sp. VR2415 2017485 species 1 726 0 1 species 43669 Brachybacterium faecium 0 933 85021 1 Intrasporangiaceae 15 9 family 2419 0 918 0 27 1 Arsenicicoccus 267408 genus 2 0 891 1 no rank 2663846 species 1 Arsenicicoccus sp. oral taxon 190 1658671 0 891 0 396 2 genus 2 53457 1 Janibacter 0 394 species 1 Janibacter indicus 857417 331 0 1 Intrasporangium 53357 8 genus 2 species 1 Intrasporangium calvum 53358 0 323 0 759 2 genus 44 265976 Serinicoccus 1 1758689 Serinicoccus sp. JLT9 1 species 715 0 0 1290031 order 27 137 1 Bifidobacteriales 85004 11720 31953 1 Bifidobacteriaceae 26 family 1289894 0 1272227 0 5341 1678 Bifidobacterium 1 19 genus 6438 0 Bifidobacterium dentium 1689 species 1 Bifidobacterium pseudocatenulatum 28026 species 1 78687 0 240118 0 Bifidobacterium adolescentis 1680 species 1 747 0 Bifidobacterium actinocoloniiforme 638619 species 1 species 1 Bifidobacterium pseudolongum 1694 0 1704 species 1 Bifidobacterium coryneforme 1687 0 763 0 3114 species 1 Bifidobacterium scardovii 158787 0 50701 2 species 1686 1 Bifidobacterium catenulatum 17932 0 32769 1 subspecies 630129 Bifidobacterium kashiwanohense species 1 Bifidobacterium choerinum 35760 0 4239 species 1 Bifidobacterium thermophilum 33905 0 1637 1 species 1684 Bifidobacterium asteroides 0 1286 1 species 1681 Bifidobacterium bifidum 0 27999 1 species 1685 Bifidobacterium breve 0 85301 1650 0 28025 Bifidobacterium animalis 1 species species 1 Bifidobacterium indicum 1691 0 643 6017 0 Bifidobacterium angulatum 1683 species 1 0 755842 1 species 216816 Bifidobacterium longum 1 Scardovia 196081 1 genus 2 719 0 718 0 Scardovia inopinata 78259 species 1 2 genus 5 196082 1 Parascardovia 0 1045 0 1040 1 species 78258 Parascardovia denticolens 2 genus 3 2701 Gardnerella 1 0 4183 0 4180 species 1 Gardnerella vaginalis 2702 161 order 85007 1 Corynebacteriales 678 0 118708 family 52 262 Corynebacteriaceae 1 1653 0 59972 59710 0 Corynebacterium 1 1716 711 genus 51 461 0 571915 Corynebacterium mustelae 1 species 0 751 species 1 Corynebacterium diphtheriae 1717 0 1263 1 species 38289 Corynebacterium jeikeium 1 species 161895 Corynebacterium phocae 0 433 161896 Corynebacterium camporealensis 1 species 558 0 0 572 1 species 92706 [Brevibacterium] flavum 1415 0 43770 Corynebacterium striatum 1 species 1074 0 38305 Corynebacterium vitaeruminis 1 species 441 0 1050174 Corynebacterium epidermidicanis 1 species 320 0 Corynebacterium kroppenstedtii 161879 species 1 0 401 species 1 Corynebacterium ammoniagenes 1697 1 species 35757 Corynebacterium cystitidis 0 259 species 1 Corynebacterium uterequi 1072256 0 496 0 511 1 species 1408191 Corynebacterium deserti 0 941 species 1 Corynebacterium efficiens 152794 0 613 species 1 Corynebacterium maris 575200 species 1 Corynebacterium ulcerans 65058 0 821 species 1 Corynebacterium singulare 161899 0 595 191610 Corynebacterium atypicum 1 species 485 0 504 0 Corynebacterium casei 160386 species 1 0 726 species 1 Corynebacterium sphenisci 191493 1230998 Corynebacterium frankenforstense 1 species 910 0 Corynebacterium lactis 1231000 species 1 368 0 1 species 225326 Corynebacterium halotolerans 0 687 1 species 1223514 Corynebacterium humireducens 0 658 0 338 species 1 Corynebacterium terpenotabidum 89154 0 1001 1 species 169292 Corynebacterium aurimucosum Corynebacterium aquilae 203263 species 1 458 0 0 423 1 species 28028 Corynebacterium flavescens 1046 0 2624378 2 no rank 394 0 702967 Corynebacterium sp. NML98-0116 1 species Corynebacterium sp. ATCC 6931 1487956 species 1 652 0 472 0 Corynebacterium glaucum 187491 species 1 Corynebacterium stationis 1705 species 1 986 0 0 968 1 species 1719 Corynebacterium pseudotuberculosis 0 977 1 species 146827 Corynebacterium simulans 1 species 136857 Corynebacterium testudinoris 0 543 1649 0 35755 Corynebacterium kutscheri 1 species 1 species 1721 Corynebacterium callunae 0 627 772 0 1727 Corynebacterium variabile 1 species 1652495 Corynebacterium crudilactis 1 species 675 0 1208 0 Corynebacterium glutamicum 1718 species 1 0 536 1 species 1121358 Corynebacterium doosanense 42817 Corynebacterium argentoratense 1 species 25907 0 Corynebacterium glyciniphilum 1404244 species 1 788 0 666 0 Corynebacterium falsenii 108486 species 1 291 0 Corynebacterium resistens 258224 species 1 489 0 401472 Corynebacterium ureicelerivorans 1 species species 1 Corynebacterium imitans 156978 0 579 1 species 349751 Corynebacterium marinum 0 721 616 0 43771 Corynebacterium urealyticum 1 species 3 family 4 316606 1 Segniliparaceae 0 282 Segniliparus 1 286801 9 genus 2 278 0 286802 Segniliparus rotundus 1 species 269 0 1419 0 Tsukamurellaceae 1 85028 9 family 4 genus 3 92 Tsukamurella 1 2060 0 1410 57704 Tsukamurella tyrosinosolvens 1 species 715 0 Tsukamurella paurometabola 2061 species 1 603 0 5 85029 1 Dietziaceae 4 family 973 0 0 968 genus 3 Dietzia 1 37914 9 0 519 1 no rank 2617939 1 species 712270 Dietzia sp. oral taxon 368 0 519 0 440 1 species 499555 Dietzia timorensis 39 1 Gordoniaceae 85026 family 9 4458 0 8 genus 92 2053 1 Gordonia 0 4419 1136941 Gordonia phthalatica 1 species 683 0 1004901 Gordonia iterans 1 species 518 0 2 no rank 2657482 0 1183 Gordonia sp. KTR9 337191 species 1 771 0 1 species 2059875 Gordonia sp. YC-JH1 0 412 821 0 Gordonia polyisoprenivorans 84595 species 1 species 1 Gordonia bronchialis 2054 0 467 655 0 2055 Gordonia terrae 1 species 0 30941 56 family 97 1762 Mycobacteriaceae 1 1080 0 1073531 genus 2 Mycobacterium terrae 1788 species 1 518 0 species 1 Mycobacterium sinense 875328 0 562 1866885 genus 13 9217 0 0 497 species 1 Mycobacterium rhodesiae 36814 561 0 1804 Mycobacterium gilvum 1 species 1 species 110539 Mycobacterium vanbaalenii 0 667 Mycobacterium neoaurum 1795 species 1 740 0 Mycobacterium thermoresistibile 1797 species 1 826 0 758802 Mycobacterium litorale 1 species 662 0 0 815 species 1 Mycobacterium phlei 1771 species 1 Mycobacterium chubuense 1800 0 632 1 species 134601 Mycobacterium goodii 0 689 species 1 Mycobacterium fortuitum 1766 0 628 species 1 Mycobacterium aurum 1791 0 946 1810 Mycobacterium vaccae 1 species 832 0 1772 Mycobacterium smegmatis 1 species 722 0 2741 0 670516 5 genus species 1 Mycobacterium abscessus 36809 0 837 Mycobacterium chelonae 1774 species 1 376 0 Mycobacterium immunogenum 83262 species 1 467 0 species 1 Mycobacterium saopaulense 1578165 0 530 531 0 Mycobacterium stephanolepidis 1520670 species 1 0 17483 genus 34 1281 1 Mycobacterium 1763 2642494 no rank 13 7237 0 0 679 1 species 1545728 Mycobacterium sp. EPa45 0 87 species 1 Mycobacterium sp. MOTT36Y 1168287 0 470 species 1 Mycobacterium sp. QIA-37 1561223 Mycobacterium sp. JLS 164757 species 1 434 0 692 0 Mycobacterium sp. YC-RL4 1682113 species 1 Mycobacterium sp. NRRL B-3805 1570328 species 1 740 0 189918 Mycobacterium sp. KMS 1 species 462 0 Mycobacterium sp. WY10 1920667 species 1 571 0 164756 Mycobacterium sp. MCS 1 species 443 0 728 0 Mycobacterium sp. djl-10 1879023 species 1 species 1 Mycobacterium sp. JS623 212767 0 673 0 578 species 1 Mycobacterium sp. VKM Ac-1817D 1273687 1 species 2051552 Mycobacterium sp. PYR15 0 680 763 0 Mycobacterium kansasii 1768 species 1 species 1 Mycobacterium haemophilum 29311 0 538 77643 species group 4 1110 0 783 0 1773 1 Mycobacterium tuberculosis 287 3 species biotype 1 Mycobacterium bovis 1765 0 252 1 biotype 33894 Mycobacterium africanum 0 244 327 0 78331 Mycobacterium canettii 1 species 1 species 482462 Mycobacterium dioxanotrophicus 0 821 1809 Mycobacterium ulcerans 1 species 515 0 597 0 Mycobacterium liflandii 261524 species 1 89 0 Mycobacterium leprae 1769 species 1 3182 0 120793 8 species group species 1 Mycobacterium colombiense 339268 0 587 0 952 4 species 1767 Mycobacterium intracellulare 1 270 222805 Mycobacterium chimaera 1 subspecies 442 0 0 137 subspecies 1 Mycobacterium yongonense 1203599 1 subspecies 35617 Mycobacterium indicus pranii 0 103 0 258 1 species 701042 Mycobacterium marseillense 1138383 Mycobacterium paraintracellulare 1 species 108 0 0 1277 species 1 Mycobacterium avium 1764 668 0 Mycobacterium marinum 1781 species 1 1 species group 2249310 0 682 682 0 Mycobacterium shigaense 722731 species 1 697025 1 genus 323 0 639313 Hoyosella subflava 1 species 323 0 647 0 697024 no rank 1 647 0 1847725 genus 1 Lawsonella clevelandensis 1528099 species 1 647 0 0 19338 family 31 1 Nocardiaceae 85025 130 1827 Rhodococcus 1 300 23 genus 12001 0 761 0 191292 Rhodococcus aetherivorans 1 species 1 species 43767 Rhodococcus hoagii 0 477 733 0 Rhodococcus jostii 132919 species 1 0 508 species 1 Rhodococcus rhodochrous 1829 Rhodococcus opacus 37919 species 1 1372 0 400 0 334542 Rhodococcus qingshengii 1 species 1830 Rhodococcus ruber 1 species 582 0 5318 0 192944 no rank 12 0 698 species 1 Rhodococcus sp. WB1 1033922 0 197 species 1 Rhodococcus sp. WMMA185 679318 346 0 Rhodococcus sp. 2G 1570939 species 1 1653478 Rhodococcus sp. PBTS 1 1 species 317 0 320 0 Rhodococcus sp. BH4 1807790 species 1 1 species 1805827 Rhodococcus sp. MTM3W5.2 0 555 668 0 1653479 Rhodococcus sp. PBTS 2 1 species 1 species 935199 Rhodococcus sp. p52 0 415 species 1 Rhodococcus sp. H-CA8f 1727214 0 395 1 species 1045808 Rhodococcus sp. YL-1 0 346 696 0 Rhodococcus sp. B7740 1564114 species 1 1723645 Rhodococcus sp. 008 1 species 365 0 1828 Rhodococcus fascians 1 species 455 0 471 0 Rhodococcus pyridinivorans 103816 species 1 species 1 Rhodococcus erythropolis 1833 0 624 1817 Nocardia 1 101 7 genus 7207 0 37329 Nocardia farcinica 1 species 1088 0 950 0 Nocardia terpenica 455432 species 1 species 1 Nocardia seriolae 37332 0 1251 species 1 Nocardia cyriacigeorgica 135487 0 1518 814 0 Nocardia nova 37330 species 1 Nocardia brasiliensis 37326 species 1 1485 0 0 4463 order 11 74 1 Candidatus Nanopelagicales 2039638 0 4389 family 10 2162846 0 935 genus 3 2039639 Candidatus Nanopelagicus abundans 1884916 species 1 187 0 524 0 1884915 Candidatus Nanopelagicus hibericus 1 species Candidatus Nanopelagicus limnes 1884634 species 1 224 0 3 1 Candidatus Planktophila 622681 genus 7 3454 0 Candidatus Planktophila limnetica 573600 species 1 268 0 0 511 1 species 1884907 Candidatus Planktophila vernalis 251 0 Candidatus Planktophila sulfonica 1884904 species 1 Candidatus Planktophila dulcis 1884914 species 1 598 0 species 1 Candidatus Planktophila versatilis 1884905 0 914 909 0 1884913 Candidatus Planktophila lacus 1 species order 3 1 Actinopolysporales 622450 1 0 639 622451 family 2 638 0 2 genus 31 1849 1 Actinopolyspora 0 638 414996 Actinopolyspora erythraea 1 species 607 0 85011 Streptomycetales 1 180 82 order 80651 0 2062 1 Streptomycetaceae 449 81 family 80471 0 75 genus 2570 1883 Streptomyces 1 0 75217 193462 Streptomyces niveus 1 species 640 0 0 2213 1 species 68249 Streptomyces pactum 1049 0 68214 Streptomyces griseochromogenes 1 species 362257 Streptomyces vietnamensis 1 species 989 0 Streptomyces parvulus 146923 species 1 989 0 1 species 68192 Streptomyces cyaneogriseus 0 1016 2593676 24 no rank 20398 0 Streptomyces sp. 3211 1964449 species 1 573 0 1561022 Streptomyces sp. CCM_MD2014 1 species 964 0 1006 0 Streptomyces sp. P3 2135430 species 1 444103 Streptomyces sp. CNQ-509 1 species 818 0 0 583 species 1 Streptomyces sp. WAC00288 2094021 0 735 1 species 465541 Streptomyces sp. Mg1 Streptomyces sp. PAMC 26508 1265601 species 1 660 0 722 0 Streptomyces sp. Tue 6075 1661694 species 1 0 549 species 1 Streptomyces sp. CLI2509 1984801 1 species 1812480 Streptomyces sp. fd1-xmd 0 750 1262452 Streptomyces sp. 769 1 species 891 0 1649184 Streptomyces sp. CFMR 7 1 species 718 0 1 species 1495638 Streptomyces sp. M56 0 1445 Streptomyces sp. 4F 1751294 species 1 817 0 0 732 species 1 Streptomyces sp. TN58 234612 1319 0 Streptomyces sp. RTd22 1841249 species 1 0 741 species 1 Streptomyces sp. MOE7 1961713 1849967 Streptomyces sp. SAT1 1 species 850 0 0 1014 species 1 Streptomyces sp. SirexAA-E 862751 0 666 species 1 Streptomyces sp. S8 1837283 Streptomyces sp. Sge12 1972846 species 1 756 0 2059884 Streptomyces sp. CMB-StM0423 1 species 997 0 species 1 Streptomyces sp. CdTB01 1725411 0 1025 1067 0 206662 Streptomyces sp. FR-008 1 species 729 0 Streptomyces lavendulae 1914 species 1 0 922 1 species 38300 Streptomyces pristinaespiralis 408015 Streptomyces xiamenensis 1 species 751 0 771 0 553510 Streptomyces gilvosporeus 1 species 0 884 species 1 Streptomyces sp. XZHG99 2049881 species 1 Streptomyces violaceusniger 68280 0 1561 1477431 2 species group 2260 0 42239 Streptomyces sampsonii 1 species 915 0 0 1345 species 1 Streptomyces coelicolor 1902 1 species 1912 Streptomyces hygroscopicus 0 2305 68202 Streptomyces fulvissimus 1 species 667 0 Streptomyces lividans 1916 species 1 1143 0 0 1971 1 species 1888 Streptomyces albus species 1 Streptomyces pratensis 1169025 0 621 54571 Streptomyces venezuelae 1 species 1139 0 Streptomyces glaucescens 1907 species 1 1092 0 Streptomyces avermitilis 33903 species 1 979 0 0 872 1 species 1437453 Streptomyces leeuwenhoekii 29303 Streptomyces cattleya 1 species 1210 0 2272 0 47763 Streptomyces lydicus 1 species 0 1013 1 species 1935 Streptomyces violaceoruber 1038928 Streptomyces xinghaiensis 1 species 930 0 1 species 75293 Streptomyces autolyticus 0 1486 807 0 Streptomyces noursei 1971 species 1 0 742 species 1 Streptomyces formicae 1616117 1 species 164348 Streptomyces puniciscabiei 0 947 Streptomyces bingchenggensis 379067 species 1 1348 0 0 915 1 species 1926 Streptomyces reticuli 0 951 species 1 Streptomyces lincolnensis 1915 1 species 68570 Streptomyces albulus 0 1202 595 0 Streptomyces ambofaciens 1889 species 1 1550 0 629295 species group 2 1482558 1 species subgroup 719 0 Streptomyces globisporus 1908 species 1 719 0 species subgroup 1 1482596 0 831 1 species 1911 Streptomyces griseus 0 831 0 913 1 species 1930 Streptomyces scabiei species 1 Streptomyces sp. S10(2016) 1783515 0 728 1618 0 92644 Streptomyces malaysiensis 1 species 674 0 1950 Streptomyces peucetius 1 species Streptomyces alfalfae 1642299 species 1 957 0 757 0 Streptomyces collinus 42684 species 1 0 749 1 species 67267 Streptomyces alboflavus species 1 Streptomyces rubrolavendulae 285473 0 537 939 0 Streptomyces chartreusis 1969 species 1 0 1168 species 1 Streptomyces albireticuli 1940 Streptomyces pluripotens 1355015 species 1 775 0 Streptomyces clavuligerus 1901 species 1 903 0 4805 0 25 2063 Kitasatospora 1 5 genus 0 1160 1 species 2066 Kitasatospora setae Kitasatospora aureofaciens 1894 species 1 1162 0 2633591 no rank 1 1490 0 2018025 Kitasatospora sp. MMS16-BH015 1 species 1490 0 968 0 Kitasatospora albolonga 68173 species 1 order 8 1 Geodermatophilales 1643682 43 0 2427 0 2384 family 7 51 Geodermatophilaceae 1 85030 88138 Modestobacter 1 18 2 genus 842 0 0 824 species 1 Modestobacter marinus 477641 0 640 2 genus 8 38501 Blastococcus 1 632 0 Blastococcus saxobsidens 138336 species 1 0 851 genus 2 4 1 Geodermatophilus 1860 0 847 1 species 1861 Geodermatophilus obscurus 452 0 1643818 2 no rank genus 2 5 1 Thermobispora 147067 0 452 2006 Thermobispora bispora 1 species 447 0 160 0 1643683 3 order 3 family 85032 1 Acidothermaceae 3 0 160 28048 1 Acidothermus 3 2 genus 157 0 154 0 28049 Acidothermus cellulolyticus 1 species 938 0 622452 3 order 22 83778 Kineosporiaceae 1 3 family 938 0 genus 2 Kineococcus 1 33981 7 0 916 909 0 131568 Kineococcus radiotolerans 1 species order 4 3 1 Catenulisporales 414714 0 1423 1420 0 Catenulisporaceae 1 414877 5 family 3 genus 2 1 Catenulispora 414878 13 0 1415 1402 0 304895 Catenulispora acidiphila 1 species 1 Frankiales 85013 5 order 7 3072 0 0 3067 family 6 56 Frankiaceae 1 74712 29 1854 Frankia 1 5 genus 3011 0 1 no rank 2632575 0 771 771 0 Frankia sp. EAN1pec 298653 species 1 106370 Frankia casuarinae 1 species 393 0 1 species 1859 Frankia alni 0 757 1 species 298654 Frankia inefficax 0 1061 order 4 Glycomycetales 1 85014 2 0 809 807 0 85034 1 Glycomycetaceae 18 3 family 789 0 6 Stackebrandtia 1 283810 genus 2 783 0 283811 Stackebrandtia nassauensis 1 species 17132 0 78 85009 1 Propionibacteriales 33 order 0 5101 family 13 85 1 Nocardioidaceae 85015 2 1 Pimelobacter 2044 genus 2 645 0 1 species 2045 Pimelobacter simplex 0 643 1 Kribbella 182639 13 genus 2 665 0 182640 Kribbella flavida 1 species 652 0 28 116071 1 Micropruina 2 genus 785 0 species 1 Micropruina glycogenica 75385 0 757 1935 0 1839 1 Nocardioides 32 4 genus 685 0 2045452 Nocardioides sp. 78 1 species 520 0 450734 Nocardioides dokdonensis 1 species 0 698 no rank 1 2615069 0 698 1 species 196162 Nocardioides sp. JS614 986 0 20 Aeromicrobium 1 2040 genus 2 1 species 2041 Aeromicrobium erythreum 0 966 1 Propionibacteriaceae 31957 148 family 19 11953 0 genus 1 2801844 0 836 0 836 species 1 Pseudopropionibacterium propionicum 1750 0 2011 3 genus 45 1743 1 Propionibacterium 344 0 2608905 no rank 1 0 344 1 species 671223 Propionibacterium sp. oral taxon 193 1622 0 1744 Propionibacterium freudenreichii 1 species genus 5 20 Tessaracoccus 1 72763 0 3169 2635419 no rank 1 883 0 1909732 Tessaracoccus sp. T2.5-30 1 species 883 0 791 0 1332264 Tessaracoccus aquimaris 1 species 1 species 1610493 Tessaracoccus flavus 0 657 0 818 1 species 399497 Tessaracoccus flavescens 4 genus 1912216 Cutibacterium 1 7 0 2905 428 0 Cutibacterium granulosum 33011 species 1 Cutibacterium acnes 1747 species 1 1403 0 33010 Cutibacterium avidum 1 species 1067 0 515 0 Microlunatus 1 29404 25 genus 2 490 0 29405 Microlunatus phosphovorus 1 species 12 1912215 1 Acidipropionibacterium 2 genus 1153 0 0 1141 species 1 Acidipropionibacterium acidipropionici 1748 1216 0 203133 genus 1 1216 0 2633994 1 no rank 1216 0 1871034 Propionimicrobium sp. Marseille-P3275 1 species 1197 0 Nakamurellales 1 1643684 7 order 4 3 family 60 85031 1 Nakamurellaceae 0 1190 0 1130 genus 2 21 Nakamurella 1 53460 1109 0 Nakamurella multipartita 53461 species 1 0 9438 order 16 42 1 Streptosporangiales 85012 4112 0 56 1 Streptosporangiaceae 2004 family 5 10 1 Streptosporangium 2000 genus 2 1504 0 1 species 2001 Streptosporangium roseum 0 1494 83681 1 Nonomuraea 16 2 genus 2552 0 2536 0 2593643 1 no rank 0 2536 1 species 1909395 Nonomuraea sp. ATCC 55076 family 7 59 Nocardiopsaceae 1 83676 0 3209 0 2699 genus 4 20 Nocardiopsis 1 2013 0 1184 species 1 Nocardiopsis dassonvillei 2014 53437 Nocardiopsis alba 1 species 640 0 0 855 species 1 Nocardiopsis gilva 280236 83677 1 Thermobifida 6 2 genus 451 0 1 species 2021 Thermobifida fusca 0 445 family 3 Thermomonosporaceae 1 2012 22 0 2075 2 genus 76 2019 Thermomonospora 1 0 2053 0 1977 1 species 2020 Thermomonospora curvata 11 1 Actinomycetales 2037 order 18 41254 0 0 41243 17 family 2049 1 Actinomycetaceae 2510 0 8302 genus 1 2529408 8302 0 52773 Actinomyces meyeri 1 species 0 1667 2 genus 73 2050 Mobiluncus 1 2051 Mobiluncus curtisii 1 species 1594 0 2 genus 1 1069494 1 Trueperella 0 1182 0 1181 1 species 1661 Trueperella pyogenes 1653174 genus 1 365 0 species 1 Actinotignum schaalii 59505 0 365 119 Actinomyces 1 1654 genus 9 26729 0 3 no rank 2609248 0 4239 1549 0 Actinomyces sp. oral taxon 897 2081702 species 1 0 1559 species 1 Actinomyces sp. oral taxon 414 712122 0 1131 1 species 1851395 Actinomyces sp. Chiba101 1852377 Actinomyces pacaensis 1 species 15111 0 0 4422 species 1 Actinomyces oris 544580 1 species 1960083 Actinomyces gaoshouyii 0 900 0 1510 1 species 111015 Actinomyces radicidentis Actinomyces sp. VUL4_3 1912795 species 1 428 0 1 genus 28263 0 488 Arcanobacterium haemolyticum 28264 species 1 488 0 0 13898 order 20 Micromonosporales 1 85008 60 189 28056 1 Micromonosporaceae 19 family 13838 0 0 1398 genus 3 15 Salinispora 1 168694 606 0 168695 Salinispora tropica 1 species species 1 Salinispora arenicola 168697 0 777 5699 0 1865 Actinoplanes 1 129 6 genus 1063 0 Actinoplanes missouriensis 1866 species 1 Actinoplanes friuliensis 196914 species 1 1291 0 3216 0 2626549 3 no rank 134676 Actinoplanes sp. SE50/110 1 species 1024 0 0 1168 1 species 649831 Actinoplanes sp. N902-109 species 1 Actinoplanes sp. SE50 2033844 0 1024 Plantactinospora 1 673534 43 genus 4 3266 0 2631981 no rank 3 3223 0 2071627 Plantactinospora sp. BB1 1 species 893 0 0 1227 species 1 Plantactinospora sp. KBS50 2024580 2108470 Plantactinospora sp. BC1 1 species 1103 0 Verrucosispora 84593 genus 1 2 0 4 genus 1873 Micromonospora 1 40 0 3284 1112 0 2617518 1 no rank 1112 0 Micromonospora sp. L5 648999 species 1 species 1 Verrucosispora maris 1003110 0 770 Micromonospora aurantiaca 47850 species 1 1362 0 25704 0 85010 1 Pseudonocardiales 60 42 order 0 25644 41 family 338 2070 Pseudonocardiaceae 1 0 4207 8 genus 148 1847 1 Pseudonocardia 0 3512 6 no rank 2619320 1 species 1690815 Pseudonocardia sp. HH130630-07 0 754 0 709 1 species 445576 Pseudonocardia sp. AL041005-10 0 427 species 1 Pseudonocardia sp. EC080625-04 1096868 667 0 1641402 Pseudonocardia sp. HH130629-09 1 species Pseudonocardia sp. EC080610-09 1688404 species 1 479 0 1 species 1096856 Pseudonocardia sp. EC080619-01 0 476 0 547 1 species 240495 Pseudonocardia dioxanivorans 7 genus 158 1813 Amycolatopsis 1 0 6045 species 1 Amycolatopsis mediterranei 33910 0 1169 Amycolatopsis methanolica 1814 species 1 850 0 0 1671 species 1 Amycolatopsis orientalis 31958 1499 0 2618356 2 no rank Amycolatopsis sp. BJA-103 1911175 species 1 643 0 0 856 species 1 Amycolatopsis sp. AA4 1896961 species 1 Amycolatopsis japonica 208439 0 698 0 1173 genus 2 1 1 Kibdelosporangium 2029 860235 Kibdelosporangium phytohabitans 1 species 1172 0 923 0 1 Saccharopolyspora 1835 5 genus 2 1836 Saccharopolyspora erythraea 1 species 918 0 3208 0 64 Actinosynnema 1 40566 genus 3 40567 Actinosynnema mirum 1 species 1594 0 1550 0 Actinosynnema pretiosum 42197 species 1 142577 Prauserella 1 9 2 genus 697 0 Prauserella marina 530584 species 1 688 0 0 2121 2 genus 43356 1 Kutzneria 2 Kutzneria albida 43357 species 1 2119 0 2 genus 2 1851 1 Saccharomonospora 0 293 0 291 1 species 1852 Saccharomonospora viridis 2 genus 7 165301 Lentzea 1 0 976 1586287 Lentzea guizhouensis 1 species 969 0 2 genus 674734 Alloactinosynnema 1 2 0 777 775 0 2636053 1 no rank Alloactinosynnema sp. L-07 1653480 species 1 775 0 1352 0 3 Saccharothrix 1 2071 genus 2 species 1 Saccharothrix espanaensis 103731 0 1349 3534 0 35 Actinoalloteichus 1 65496 genus 6 0 840 species 1 Actinoalloteichus sp. ADI127-7 1612552 474 0 Actinoalloteichus hymeniacidonis 340345 species 1 1486 0 2644606 no rank 2 0 826 1 species 1612551 Actinoalloteichus sp. GBA129-24 660 0 2072503 Actinoalloteichus sp. AHMU CJ021 1 species 699 0 1470176 Actinoalloteichus hoggarensis 1 species 0 448 no rank 1 52018 species 1 Actinobacteria bacterium IMCC26256 1650658 0 448 1096 0 4 84995 1 Rubrobacteria 6 class 1092 0 21 84996 Rubrobacterales 1 5 order 15 Rubrobacteraceae 1 84997 family 4 1071 0 0 1056 3 genus 42255 Rubrobacter 1 23 species 1 Rubrobacter xylanophilus 49319 0 763 42256 Rubrobacter radiotolerans 1 species 270 0 544448 1 Tenericutes 2 102 phylum 78766 0 Mollicutes 1 31969 77 class 97 70075 0 28570 0 Mycoplasmatales 1 2085 28 order 44 28542 0 38 1 Mycoplasmataceae 2092 family 43 genus 3 Ureaplasma 1 2129 3 0 1225 0 755 species 1 Ureaplasma parvum 134821 467 0 Ureaplasma urealyticum 2130 species 1 8309 0 2767358 genus 12 932 0 171284 Mycoplasma cynos 1 species 29553 Mycoplasma bovirhinis 1 species 1066 0 0 507 1 species 29555 Mycoplasma canis 2110 Mycoplasma agalactiae 1 species 709 0 species 1 Mycoplasma fermentans 2115 0 1101 2109 Mycoplasma synoviae 1 species 435 0 2094 Mycoplasma arginini 1 species 610 0 750 0 2112 Mycoplasma bovigenitalium 1 species 1070 0 28903 Mycoplasma bovis 1 species species 1 Mycoplasma pullorum 48003 0 299 species 1 Mycoplasma pulmonis 2107 0 628 species 1 Mycoplasma californicum 2113 0 202 0 18970 genus 27 1 Mycoplasma 2093 127 0 811 1 species 2098 Mycoplasma hominis 1 species 136241 Mycoplasma haemocanis 0 85 Mycoplasma dispar 86660 species 1 144 0 0 222 species 1 Mycoplasma ovis 171632 45362 Mycoplasma bovoculi 1 species 364 0 0 463 species 1 Mycoplasma crocodyli 50052 0 335 1 species 2111 Mycoplasma arthritidis 366 0 Mycoplasma pneumoniae 2104 species 1 1 species 57372 Mycoplasma suis 0 285 0 250 species 1 Mycoplasma flocculare 2128 Mycoplasma parvum 984991 species 1 233 0 29501 Mycoplasma haemofelis 1 species 71 0 species 1 Mycoplasma yeatsii 51365 0 1491 1 species 2100 Mycoplasma hyorhinis 0 738 910 0 Mycoplasma gallisepticum 2096 species 1 0 769 1 species 28227 Mycoplasma penetrans 362 0 Mycoplasma canadense 29554 species 1 species 1 Mycoplasma hyopneumoniae 2099 0 609 0 911 1 species 2118 Mycoplasma mobile 0 375 1 species 2097 Mycoplasma genitalium 0 120 species 1 Mycoplasma wenyonii 65123 563 0 2683645 1 no rank Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 species 1 563 0 0 914 species 1 Mycoplasma putrefaciens 2123 0 7452 3 species group 656088 0 3075 species 1 Mycoplasma capricolum 2095 1 species 2102 Mycoplasma mycoides 0 2698 Mycoplasma leachii 2105 species 1 1679 0 0 9418 order 13 10 1 Acholeplasmatales 186329 6 1 Acholeplasmataceae 2146 family 12 9408 0 Candidatus Phytoplasma 1 33926 5 genus 6 2488 0 652 0 85620 3 species group 202462 Maize bushy stunt phytoplasma 1 species 303 0 Aster yellows witches'-broom phytoplasma 229545 species 1 136 0 213 0 Onion yellows phytoplasma 100379 species 1 0 381 species group 1 85630 381 0 Candidatus Phytoplasma mali 37692 species 1 species group 1 85632 0 1450 1450 0 59748 Candidatus Phytoplasma australiense 1 species Acholeplasma 1 2147 38 genus 5 6914 0 1 species 2148 Acholeplasma laidlawii 0 1163 species 1 Acholeplasma brassicae 61635 0 1257 38986 Acholeplasma palmae 1 species 2872 0 1584 0 Acholeplasma oculi 35623 species 1 59 Entomoplasmatales 1 186328 order 39 32010 0 19531 0 42 Spiroplasmataceae 1 2131 family 24 154 1 Spiroplasma 2132 genus 23 19489 0 1 species 216934 Spiroplasma corruscae 0 959 2144 Spiroplasma mirum 1 species 1266 0 858 0 Spiroplasma syrphidicola 216945 species 1 0 482 species 1 Spiroplasma citri 2133 Spiroplasma litorale 216942 species 1 597 0 216946 Spiroplasma turonicum 1 species 1135 0 Spiroplasma apis 2137 species 1 822 0 578 0 315358 Spiroplasma eriocheiris 1 species 0 1878 species 1 Spiroplasma floricola 216937 216944 Spiroplasma sabaudiense 1 species 717 0 1133 0 Spiroplasma culicicola 216935 species 1 0 640 1 species 2136 Spiroplasma monobiae 47834 Spiroplasma kunkelii 1 species 838 0 Spiroplasma taiwanense 2145 species 1 860 0 216938 Spiroplasma helicoides 1 species 1274 0 1114980 Spiroplasma atrichopogonis 1 species 1271 0 Spiroplasma chrysopicola 216933 species 1 538 0 2637901 2 no rank 1358 0 Spiroplasma sp. NBRC 100390 1914410 species 1 679 0 Spiroplasma sp. TU-14 1898044 species 1 679 0 Spiroplasma cantharicola 362837 species 1 693 0 0 1144 1 species 2139 Spiroplasma clarkii 1 species 216936 Spiroplasma diminutum 0 294 0 12420 14 family 33925 1 Entomoplasmataceae 51 8 genus 133 46239 1 Mesoplasma 0 8121 631 0 324078 Mesoplasma coleopterae 1 species 794 0 2149 Mesoplasma entomophilum 1 species 225999 Mesoplasma syrphidae 1 species 754 0 0 3018 1 species 2151 Mesoplasma florum species 1 Mesoplasma tabanidae 219745 0 631 0 342 1 species 216427 Mesoplasma chauliocola 0 1818 1 species 138853 Mesoplasma lactucae 4248 0 19 1 Entomoplasma 46238 genus 5 species 1 Entomoplasma somnilux 215578 0 1165 480 0 74700 Entomoplasma freundtii 1 species 1 species 214888 Entomoplasma luminosum 0 1738 Entomoplasma melaleucae 81459 species 1 846 0 2799557 no rank 2 2780 0 21 1 Candidatus Izimaplasma 1912503 genus 2 2780 0 0 2759 no rank 1 2624196 1541959 Candidatus Izimaplasma sp. HR1 1 species 2759 0 713063 no rank 2 5909 0 species 1 Tenericutes bacterium MO-XQ 1911684 0 2972 species 1 Tenericutes bacterium MZ-XQ 1911683 0 2937 717 phylum 1239 Firmicutes 1 327 0 9119465 0 108119 class 11 1 Erysipelotrichia 1 526524 0 108118 10 order 10 526525 1 Erysipelotrichales 9 family 128827 1 Erysipelotrichaceae 136 0 108108 0 5021 genus 2 1 Faecalibaculum 1729679 15 Faecalibaculum rodentium 1702221 species 1 5006 0 Erysipelothrix 1 1647 15 genus 3 3632 0 1829 0 Erysipelothrix rhusiopathiae 1648 species 1 1 species 1514105 Erysipelothrix larvae 0 1788 2 genus 191303 Turicibacter 1 15 0 82702 0 82687 1 no rank 2638206 0 82687 species 1 Turicibacter sp. H121 1712675 544447 1 no rank 16617 0 1834207 Erysipelotrichaceae bacterium I46 1 species 16617 0 1 no rank 84086 0 4053 4053 0 endosymbiont 'TC1' of Trimyema compressum 243899 species 1 5 Tissierellia 1 1737404 class 17 32203 0 Tissierellales 1 1737405 440 order 14 29362 0 1602 Peptoniphilaceae 1 1570339 family 11 21014 0 2717 0 Peptoniphilus 1 162289 1 genus 2 1 no rank 2637196 0 2716 Peptoniphilus sp. ING2-D1G 1912856 species 1 2716 0 genus 2 17 1 Finegoldia 150022 0 4096 1260 Finegoldia magna 1 species 4079 0 543311 Parvimonas 1 19 2 genus 5790 0 5771 0 33033 Parvimonas micra 1 species genus 1 1161127 0 2087 1852373 Murdochiella vaginalis 1 species 2087 0 4722 0 3 165779 Anaerococcus 1 3 genus species 1 Anaerococcus mediterraneensis 1870984 0 2359 0 2360 species 1 Anaerococcus prevotii 33034 2042895 2 family 7908 0 genus 2 5 1 Gottschalkia 1505664 0 7908 0 7903 species 1 Gottschalkia acidurici 1556 1737407 2 no rank 2836 0 2 genus 1582879 1 Ezakiella 5 0 2836 1 species 1852374 Ezakiella massiliensis 0 2831 219 class 186801 1 Clostridia 355 0 5204688 0 17963 order 12 12 1 Halanaerobiales 53433 35 1 Halobacteroidaceae 53434 family 5 8100 0 5878 0 6 42417 Halobacteroides 1 2 genus Halobacteroides halobius 42422 species 1 5872 0 2187 0 1 1 Acetohalobium 28186 genus 2 2186 0 28187 Acetohalobium arabaticum 1 species 0 9851 family 6 8 1 Halanaerobiaceae 972 9041 0 18 1 Halanaerobium 2330 genus 3 3025 0 Halanaerobium hydrogeniformans 656519 species 1 2331 Halanaerobium praevalens 1 species 5998 0 802 0 11 32636 1 Halothermothrix 2 genus 31909 Halothermothrix orenii 1 species 791 0 order 3 1 Natranaerobiales 485256 5 0 1826 2 family 485255 0 1821 32 375928 Natranaerobius 1 2 genus 1821 0 0 1789 1 species 375929 Natranaerobius thermophilus 5127334 0 186802 Clostridiales 1 10285 162 order 0 17393 4 family 186806 1 Eubacteriaceae 18 0 2545 genus 1 33951 1 species 33952 Acetobacterium woodii 0 2545 14830 0 653 1 Eubacterium 1730 genus 2 0 14177 species 1 Eubacterium limosum 1736 12 family 2304686 0 36273 1508657 1 Ruminiclostridium 225 2 genus 3353 0 3128 0 [Clostridium] cellulolyticum 1521 species 1 1 genus 2304691 0 1711 0 1711 1 species 1510 [Clostridium] stercorarium 1 no rank 2305130 0 13991 Ruminiclostridium sp. KB18 1834198 species 1 13991 0 0 2138 2 genus 5 236752 1 Fastidiosipila 0 2133 1 species 236753 Fastidiosipila sanguinis 1 Mageeibacillus 1637257 2 genus 2 2290 0 2288 0 884684 Mageeibacillus indolicus 1 species 3199 0 2304693 1 genus species 1 [Clostridium] thermosuccinogenes 84032 0 3199 2304692 genus 3 9591 0 2953 0 288965 [Clostridium] clariflavum 1 species 0 3031 species 1 Herbivorax saccincola 1677857 3607 0 Ruminiclostridium thermocellum 1515 species 1 153053 0 1 Peptostreptococcaceae 186804 282 family 12 genus 2 2 1 Paeniclostridium 1849828 0 28362 28360 0 Paeniclostridium sordellii 1505 species 1 1 Filifactor 44259 1 genus 2 3231 0 Filifactor alocis 143361 species 1 3230 0 22 1 Acetoanaerobium 186831 genus 2 5568 0 1511 Acetoanaerobium sticklandii 1 species 5546 0 110959 0 135 1 Clostridioides 1870884 genus 2 1496 Clostridioides difficile 1 species 110824 0 no rank 1 1411023 0 1819 Peptostreptococcaceae bacterium oral taxon 929 2081703 species 1 1819 0 0 2832 2 genus 1481960 1 Peptoclostridium 2 2830 0 Peptoclostridium acidaminophilum 1731 species 1 1149 0 68298 2 family 1 genus 129001 0 307 Syntrophothermus lipocalidus 86170 species 1 307 0 862 1 genus 842 0 0 842 1 species 863 Syntrophomonas wolfei 553 31979 1 Clostridiaceae 41 family 424369 0 26 1 Candidatus Arthromitus 49082 genus 4 5558 0 no rank 3 2638829 0 5532 species 1 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 0 1512 1487 0 49118 Candidatus Arthromitus sp. SFB-mouse 1 species 0 2533 species 1 Candidatus Arthromitus sp. SFB-rat-Yit 1041504 0 6051 3 genus 114627 Alkaliphilus 1 10 0 3374 1 species 208226 Alkaliphilus metalliredigens Alkaliphilus oremlandii 461876 species 1 2667 0 5100 0 14 390805 Geosporobacter 1 2 genus 1424294 Geosporobacter ferrireducens 1 species 5086 0 1066 1 Clostridium 1485 genus 30 406971 0 17658 0 1561 Clostridium baratii 1 species Clostridium tetani 1513 species 1 12876 0 1534 Clostridium kluyveri 1 species 9152 0 0 17162 1 species 1501 Clostridium pasteurianum 0 7341 1 species 1542 Clostridium novyi 0 6156 species 1 Clostridium ljungdahlii 1538 1509 Clostridium sporogenes 1 species 8800 0 1497 Clostridium formicaceticum 1 species 5466 0 0 10930 1 species 1548 Clostridium scatologenes 238834 Clostridium estertheticum 1 species 9015 0 17266 0 Clostridium saccharoperbutylacetonicum 36745 species 1 Clostridium tyrobutyricum 1519 species 1 6005 0 42100 0 Clostridium perfringens 1502 species 1 no rank 2 2614128 0 25324 4241 0 Clostridium sp. BNL1100 755731 species 1 0 21083 1 species 1042156 Clostridium sp. SY8519 1 species 217159 Clostridium carboxidivorans 0 12100 1493 Clostridium cellulovorans 1 species 11210 0 46867 Clostridium chauvoei 1 species 10390 0 65096 0 Clostridium botulinum 1491 species 1 1520 Clostridium beijerinckii 1 species 25898 0 Clostridium acetobutylicum 1488 species 1 4832 0 species 1 Clostridium argentinense 29341 0 10004 18654 0 1492 Clostridium butyricum 1 species 9697 0 Clostridium bornimense 1216932 species 1 11548 0 Clostridium saccharobutylicum 169679 species 1 6942 0 84023 Clostridium autoethanogenum 1 species 394958 Clostridium taeniosporum 1 species 10312 0 0 8271 species 1 Clostridium cochlearium 1494 0 5700 1 species 84022 Clostridium aceticum 136 0 Mordavella 1981033 genus 1 family 29 105 1 Peptococcaceae 186807 0 51180 76 1 Desulfotomaculum 1562 genus 5 11577 0 3026 0 Desulfotomaculum ferrireducens 1833852 species 1 0 2056 1 species 1565 Desulfotomaculum nigrificans 0 4324 1 species 59610 Desulfotomaculum reducens 2095 0 Desulfotomaculum ruminis 1564 species 1 2959 0 2282742 genus 1 0 2959 species 1 Desulfotomaculum acetoxidans 58138 2 genus 2 471826 Candidatus Desulforudis 1 0 804 0 802 species 1 Candidatus Desulforudis audaxviator 471827 1711 0 3 Thermincola 1 278993 genus 2 863643 Thermincola potens 1 species 1708 0 0 1707 1 genus 2282740 0 1707 species 1 Desulfotomaculum gibsoniae 102134 0 5762 4 genus 79 56112 1 Dehalobacter species 1 Dehalobacter restrictus 55583 0 2148 2635733 2 no rank 3535 0 0 2034 1 species 1131462 Dehalobacter sp. CF 1501 0 Dehalobacter sp. DCA 1147129 species 1 67 79206 Desulfosporosinus 1 4 genus 10012 0 species 1 Desulfosporosinus acidiphilus 885581 0 4991 79209 Desulfosporosinus meridiei 1 species 2023 0 2931 0 Desulfosporosinus orientis 1563 species 1 5 genus 20 36853 1 Desulfitobacterium 0 11988 Desulfitobacterium dehalogenans 36854 species 1 2905 0 49338 Desulfitobacterium hafniense 1 species 3898 0 2556 0 233055 Desulfitobacterium dichloroeliminans 1 species 1 species 142877 Desulfitobacterium metallireducens 0 2609 genus 2 1 1 Dehalobacterium 51514 0 3183 species 1 Dehalobacterium formicoaceticum 51515 0 3182 genus 2 3 Syntrophobotulus 1 51196 0 1372 1369 0 51197 Syntrophobotulus glycolicus 1 species 0 9656 family 3 1 Christensenellaceae 990719 5 Christensenella 1 990721 371 genus 2 9651 0 species 1 Christensenella massiliensis 1805714 0 9280 2210 0 4 Symbiobacteriaceae 1 543349 family 3 2733 Symbiobacterium 1 7 2 genus 2206 0 2199 0 2734 Symbiobacterium thermophilum 1 species 2723169 0 309 541000 1 Ruminococcaceae 13 family genus 1 Herbivorax 1890281 0 11 2 genus 946234 1 Flavonifractor 92 0 31796 1 species 292800 Flavonifractor plautii 0 31704 0 23666 3 genus 1263 1 Ruminococcus 49 16735 0 Ruminococcus bicirculans 1160721 species 1 0 6882 1 species 1264 Ruminococcus albus 0 3573 no rank 1 552397 species 1 [Clostridium] cellulosi 29343 0 3573 0 8693 genus 2 6 1 Ethanoligenens 253238 0 8687 species 1 Ethanoligenens harbinense 253239 2 genus 806 216851 1 Faecalibacterium 0 2648447 0 2647641 1 species 853 Faecalibacterium prausnitzii 0 6674 no rank 1 2305133 species 1 Ruminococcaceae bacterium CPB6 1572656 0 6674 31984 1 Heliobacteriaceae 11 3 family 2274 0 2263 0 2697 1 Heliobacterium 43 2 genus Heliobacterium modesticaldum 35701 species 1 2220 0 538999 no rank 10 116238 0 0 1590 family 3 1 Clostridiales Family XVII. Incertae Sedis 539000 5 0 1585 2 genus 73918 Thermaerobacter 1 11 0 1574 species 1 Thermaerobacter marianensis 73919 0 26806 genus 2 1 Intestinimonas 1392389 405 0 26401 species 1 Intestinimonas butyriciproducens 1297617 2717089 1 genus 45412 0 1 species 2086584 Mordavella sp. Marseille-P3756 0 45412 0 42430 4 family 11 543314 Clostridiales Family XIII. Incertae Sedis 1 genus 2 5 1 Mogibacterium 86331 0 6114 species 1 Mogibacterium diversum 114527 0 6109 [Eubacterium] sulci 143393 species 1 36305 0 3 family 216572 Oscillospiraceae 1 3 0 13146 genus 2 32 1 Oscillibacter 459786 0 13143 0 13111 species 1 Oscillibacter valericigenes 351091 family 26 1 Lachnospiraceae 186803 1272 0 1566939 0 263884 2 genus 26 841 1 Roseburia 0 263858 1 species 301301 Roseburia hominis genus 3 101 1 Blautia 572511 0 120705 0 79863 1 species 1322 Blautia hansenii 2648079 no rank 1 40741 0 species 1 Blautia sp. YL58 1796616 0 40741 28050 1 genus 163353 0 163353 0 39485 [Eubacterium] eligens 1 species genus 2 Cellulosilyticum 1 698776 2 0 11481 11479 0 Cellulosilyticum lentocellum 29360 species 1 29971 0 2719231 1 genus 29971 0 [Clostridium] saccharolyticum 84030 species 1 0 104028 genus 4 345 1 Lachnoclostridium 1506553 48389 0 Lachnoclostridium phocaeense 1871021 species 1 0 44046 no rank 1 2608895 species 1 Lachnoclostridium sp. YL32 1834196 0 44046 0 11248 species 1 Lachnoclostridium phytofermentans 66219 1 genus 1663717 0 7106 0 7106 1 species 1679721 Herbinix luporum 0 134062 genus 1 2569097 0 134062 1 species 39488 [Eubacterium] hallii 66 1 Anaerostipes 207244 genus 2 152032 0 0 151966 species 1 Anaerostipes hadrus 649756 186928 2 no rank 446338 0 39491 [Eubacterium] rectale 1 species 435493 0 10845 0 712991 Lachnospiraceae bacterium oral taxon 500 1 species 2 genus 4 2039240 Anaerotignum 1 0 4275 species 1 Anaerotignum propionicum 28446 0 4271 1 genus 2719313 0 107385 [Clostridium] bolteae 208479 species 1 107385 0 0 21047 3 genus 38 830 Butyrivibrio 1 0 10558 species 1 Butyrivibrio proteoclasticus 43305 1 species 185008 Butyrivibrio hungatei 0 10451 37 order 68 68295 1 Thermoanaerobacterales 0 52637 1 Thermoanaerobacterales Family IV. Incertae Sedis 543372 14 family 3 1193 0 5 252965 Mahella 1 2 genus 1179 0 1 species 252966 Mahella australiensis 0 1174 0 18951 family 12 1 Thermoanaerobacterales Family III. Incertae Sedis 543371 67 176 44000 1 Caldicellulosiruptor 9 genus 12657 0 1 species 44001 Caldicellulosiruptor saccharolyticus 0 1568 0 1621 1 species 52765 Caldicellulosiruptor kristjanssonii 0 1516 1 species 413888 Caldicellulosiruptor hydrothermalis species 1 Caldicellulosiruptor bescii 31899 0 1113 717609 Caldicellulosiruptor obsidiansis 1 species 1603 0 species 1 Caldicellulosiruptor kronotskyensis 413889 0 1524 55205 Caldicellulosiruptor owensensis 1 species 1138 0 0 2398 species 1 Caldicellulosiruptor lactoaceticus 52766 genus 2 28895 0 6227 3936 0 1517 Thermoanaerobacterium thermosaccharolyticum 1 species 0 2291 species 1 Thermoanaerobacterium xylanolyticum 29329 2 family 227387 0 675 675 0 1 Thermodesulfobium 227388 1 genus 2 species 1 Thermodesulfobium narugense 184064 0 674 31750 0 22 Thermoanaerobacteraceae 1 186814 family 19 genus 2 Carboxydothermus 1 129957 2 0 1526 1524 0 Carboxydothermus hydrogenoformans 129958 species 1 9 genus 1754 1 Thermoanaerobacter 574 0 26013 no rank 2 2636821 0 6810 3751 0 Thermoanaerobacter sp. X514 399726 species 1 573062 Thermoanaerobacter sp. X513 1 species 3059 0 1 species 29323 Thermoanaerobacter brockii 0 3776 0 3020 species 1 Thermoanaerobacter wiegelii 46354 0 2599 species 1 Thermoanaerobacter mathranii 583357 108150 Thermoanaerobacter italicus 1 species 2779 0 2679 0 2325 Thermoanaerobacter kivui 1 species 3776 0 Thermoanaerobacter pseudethanolicus 496866 species 1 2133 0 42857 4 no rank 2 44260 1 Moorella 2 genus 1303 0 1525 Moorella thermoacetica 1 species 1301 0 42837 1 Ammonifex 3 2 genus 830 0 0 827 species 1 Ammonifex degensii 42838 0 630 genus 2 2 Thermacetogenium 1 140458 628 0 Thermacetogenium phaeum 85874 species 1 1 genus 249529 0 1426 0 1426 1 species 911092 Caldanaerobacter subterraneus 2770089 4 order 4573 0 2 family 2770093 0 2205 0 2205 genus 2 2 1 Thermosediminibacter 291988 Thermosediminibacter oceani 291990 species 1 2203 0 0 2368 family 2 2770092 1 Tepidanaerobacter 499228 3 genus 2 2368 0 Tepidanaerobacter acetatoxydans 499229 species 1 2365 0 0 2468735 class 31 1 Negativicutes 909932 62 0 24646 5 order 51 1843488 1 Acidaminococcales 42 909930 1 Acidaminococcaceae 4 family 24595 0 0 24553 genus 3 112 1 Acidaminococcus 904 0 6552 species 1 Acidaminococcus fermentans 905 species 1 Acidaminococcus intestini 187327 0 17889 909929 1 Selenomonadales 201 14 order 2343836 0 1843490 1 Sporomusaceae 19 4 family 40648 0 40629 0 365348 1 Pelosinus 101 3 genus 0 19282 1 no rank 2629460 19282 0 484770 Pelosinus sp. UFO1 1 species species 1 Pelosinus fermentans 365349 0 21246 family 9 Selenomonadaceae 1 1843491 222 0 2302987 0 37556 genus 6 276 1 Selenomonas 970 Selenomonas ruminantium 971 species 1 14828 0 69823 Selenomonas sputigena 1 species 7738 0 14714 0 2637378 3 no rank 713030 Selenomonas sp. oral taxon 136 1 species 6130 0 0 3060 1 species 1884263 Selenomonas sp. oral taxon 920 1 species 712538 Selenomonas sp. oral taxon 478 0 5524 Megamonas 1 158846 74 genus 2 2265209 0 species 1 Megamonas hypermegale 158847 0 2265135 0 100191 11 order 922 1843489 1 Veillonellales family 10 7697 1 Veillonellaceae 31977 0 99269 1 Negativicoccus 909928 13 genus 2 4834 0 1 species 1702287 Negativicoccus massiliensis 0 4821 2 genus 906 Megasphaera 1 264 0 32355 Megasphaera elsdenii 907 species 1 32091 0 2 genus 39948 Dialister 1 36 0 17061 17025 0 39950 Dialister pneumosintes 1 species 37322 0 29465 Veillonella 1 45 3 genus 29713 0 29466 Veillonella parvula 1 species 0 7564 species 1 Veillonella rodentium 248315 1299448 0 91061 1 Bacilli 926 430 class 663742 0 1 Bacillales 1385 622 order 264 319408 0 186817 1 Bacillaceae 572 117 family 6 genus 150247 1 Anoxybacillus 12 0 11737 2639704 no rank 2 3636 0 1490057 Anoxybacillus sp. B7M1 1 species 2071 0 1565 0 Anoxybacillus sp. B2M1 1490052 species 1 0 2111 species 1 Anoxybacillus gonensis 198467 2038 0 294699 Anoxybacillus amylolyticus 1 species Anoxybacillus flavithermus 33934 species 1 3940 0 0 194568 genus 58 4341 Bacillus 1 1386 653685 9 species group 18996 0 1105 0 Bacillus paralicheniformis 1648923 species 1 species 1 Bacillus licheniformis 1402 0 1823 1423 Bacillus subtilis 1 species 7146 0 1 species 1452 Bacillus atrophaeus 0 2997 species subgroup 3 1938374 0 4057 Bacillus amyloliquefaciens 1390 species 1 1777 0 1 species 659243 Bacillus siamensis 0 583 species 1 Bacillus velezensis 492670 0 1697 0 1778 species 1 Bacillus sonorensis 119858 Bacillus vallismortis 72361 species 1 90 0 33932 Bacillus cohnii 1 species 3410 0 0 3971 species 1 Bacillus flexus 86664 0 2559 1 species group 1792192 0 2559 1 species 293387 Bacillus altitudinis 1 species 1664069 Bacillus glycinifermentans 0 1104 2380 0 Bacillus xiamenensis 1178537 species 1 Bacillus infantis 324767 species 1 1318 0 0 7091 1 species 135735 Bacillus endophyticus Bacillus beveridgei 632773 species 1 808 0 Bacillus gibsonii 79881 species 1 636 0 83329 0 86661 10 species group 1396 Bacillus cereus 1 species 26640 0 0 8961 3 no rank 2750818 0 3554 species 1 Bacillus sp. ABP14 1892404 0 3094 1 species 1839798 Bacillus sp. FDAARGOS_235 2313 0 2053832 Bacillus sp. HBCD-sjtu 1 species 155322 Bacillus toyonensis 1 species 3072 0 0 23676 1 species 1428 Bacillus thuringiensis 0 2608 species 1 Bacillus cytotoxicus 580165 3054 0 1392 Bacillus anthracis 1 species 0 11855 1 species 1405 Bacillus mycoides 3463 0 658666 Bacillus bombysepticus 1 species 0 2442 1 species 1413 Bacillus cellulosilyticus Bacillus smithii 1479 species 1 1614 0 Bacillus methanolicus 1471 species 1 2399 0 0 3460 species 1 Bacillus aryabhattai 412384 1 species 1404 Bacillus megaterium 0 8568 1 species 1547283 Bacillus weihaiensis 0 3395 1 species 79883 Bacillus horikoshii 0 2463 0 2862 species 1 Bacillus coagulans 1398 9457 0 Bacillus pumilus 1408 species 1 Bacillus safensis 561879 species 1 4570 0 185979 19 no rank 23395 0 Bacillus sp. MD-5 2009331 species 1 332 0 1159 0 Bacillus sp. 1s-1 2026248 species 1 280 0 1574141 Bacillus sp. YP1 1 species 1 species 98228 Bacillus sp. OxB-1 0 692 species 1 Bacillus sp. Lzh-5 2049935 0 331 1 species 1446792 Bacillus sp. Pc3 0 450 1 species 1827146 Bacillus sp. IHB B 7164 0 3497 2825 0 756828 Bacillus sp. WP8 1 species species 1 Bacillus sp. X1(2014) 1565991 0 5182 3204 0 Bacillus sp. 1NLA3E 666686 species 1 1628753 Bacillus sp. LM 4-2 1 species 134 0 509 0 563169 Bacillus sp. SJ-10 1 species 1239 0 Bacillus sp. FJAT-14266 1837130 species 1 0 398 1 species 1941347 Bacillus sp. 275 1 species 1856406 Bacillus sp. H15-1 0 1159 1 species 1570330 Bacillus sp. BH072 0 294 species 1 Bacillus sp. SDLI1 1774743 0 940 1127744 Bacillus sp. JS 1 species 412 0 0 358 1 species 1409 Bacillus sp. (in: Bacteria) genus 15 1 Geobacillus 129337 409 0 11944 species 1 Geobacillus thermodenitrificans 33940 0 1604 Geobacillus stearothermophilus 1422 species 1 926 0 2642459 6 no rank 4581 0 0 2275 1 species 581103 Geobacillus sp. Y4.1MC1 471223 Geobacillus sp. WCH70 1 species 1164 0 1 species 550542 Geobacillus sp. Y412MC52 0 111 0 267 1 species 691437 Geobacillus sp. C56-T3 1233873 Geobacillus sp. GHH01 1 species 618 0 544556 Geobacillus sp. Y412MC61 1 species 146 0 3178 0 1505648 4 species group 1944 0 Geobacillus thermoleovorans 33941 species 1 276 0 Geobacillus thermocatenulatus 33938 species 1 Geobacillus kaustophilus 1462 species 1 624 0 1 species 169283 Geobacillus lituanicus 0 334 species 1 Geobacillus subterraneus 129338 0 443 0 803 species 1 Geobacillus genomosp. 3 1921421 5 genus 2675234 0 15551 species 1 Bacillus krulwichiae 199441 0 4254 3557 0 Bacillus pseudofirmus 79885 species 1 Bacillus clausii 79880 species 1 2626 0 species 1 Bacillus lehensis 300825 0 3379 species 1 Bacillus halodurans 86665 0 1735 0 7298 genus 3 7 Fictibacillus 1 1329200 0 3907 species 1 Fictibacillus phosphorivorans 1221500 Fictibacillus arsenicus 255247 species 1 3384 0 3740 0 45667 Halobacillus 1 2 3 genus 0 1639 1 species 1570 Halobacillus halophilus 2099 0 Halobacillus mangrovi 402384 species 1 0 1911 genus 2 1 Aeribacillus 1055323 4 species 1 Aeribacillus pallidus 33936 0 1907 9565 0 2675230 2 genus 1 species 665099 Bacillus oceanisediminis 0 4653 1 species 859143 Bacillus kochii 0 4912 7 genus 171 84406 Virgibacillus 1 0 20290 0 3402 species 1 Virgibacillus pantothenticus 1473 Virgibacillus phasianinus 2017483 species 1 1830 0 0 4133 species 1 Virgibacillus necropolis 163877 0 7007 2 no rank 2620237 0 2912 1 species 403957 Virgibacillus sp. SK37 4095 0 1911587 Virgibacillus sp. 6R 1 species 1482 Virgibacillus halodenitrificans 1 species 3747 0 0 1625 1 genus 175304 1625 0 Lentibacillus amyloliquefaciens 1472767 species 1 genus 2 2675229 0 6272 1 species 264697 Bacillus muralis 0 1816 species 1 Bacillus simplex 1478 0 4456 2124 0 1906945 genus 1 0 2124 1 species 1426 Parageobacillus thermoglucosidasius 1988 0 1 Terribacillus 459532 2 genus 2 Terribacillus aidingensis 586416 species 1 1986 0 genus 2 1 Amphibacillus 29331 1 0 2107 species 1 Amphibacillus xylanus 1449 0 2106 0 4326 1 genus 182709 1 species 182710 Oceanobacillus iheyensis 0 4326 genus 1 351195 0 864 Salimicrobium jeotgali 1230341 species 1 864 0 22926 0 1 Lysinibacillus 400634 73 genus 5 0 3410 1 species 28031 Lysinibacillus fusiformis 1 species 1421 Lysinibacillus sphaericus 0 10353 1 species 1145276 Lysinibacillus varians 0 4234 no rank 1 2636778 0 4856 4856 0 Lysinibacillus sp. YS11 2072025 species 1 family 46 372 1 Paenibacillaceae 186822 0 101728 5651 0 85151 no rank 3 3 genus 55079 1 Aneurinibacillus 7 0 5651 no rank 1 2642329 0 1728 1450761 Aneurinibacillus sp. XH2 1 species 1728 0 0 3916 species 1 Aneurinibacillus soli 1500254 genus 2 14 Thermobacillus 1 76632 0 1498 1484 0 377615 Thermobacillus composti 1 species genus 4 12 Brevibacillus 1 55080 0 12668 0 7542 species 1 Brevibacillus laterosporus 1465 2269 0 54913 Brevibacillus formosus 1 species 1393 Brevibacillus brevis 1 species 2845 0 Paenibacillus 1 44249 968 genus 36 81539 0 1 species 365617 Paenibacillus sabinae 0 1396 0 1897 species 1 Paenibacillus donghaensis 414771 2044880 1 species group 3090 0 3090 0 Paenibacillus riograndensis 483937 species 1 61624 Paenibacillus mucilaginosus 1 species 2125 0 1861 0 172713 Paenibacillus kribbensis 1 species 1 species 189425 Paenibacillus graminis 0 2167 1908 0 1870820 Paenibacillus ihbetae 1 species Paenibacillus naphthalenovorans 162209 species 1 1179 0 6274 0 Paenibacillus polymyxa 1406 species 1 635 0 1178515 Paenibacillus swuensis 1 species Paenibacillus larvae 1464 species 1 3295 0 1616788 Paenibacillus bovis 1 species 2730 0 0 2186 species 1 Paenibacillus peoriae 59893 185978 13 no rank 28480 0 1536771 Paenibacillus sp. FSL R5-0912 1 species 2385 0 2224 0 1536769 Paenibacillus sp. FSL P4-0081 1 species Paenibacillus sp. lzh-N1 2069255 species 1 1771 0 species 1 Paenibacillus sp. Y412MC10 481743 0 1446 0 2041 1 species 1536770 Paenibacillus sp. FSL R5-0345 1536772 Paenibacillus sp. FSL R7-0273 1 species 2251 0 species 1 Paenibacillus sp. BIHB4019 1870819 0 2230 0 2599 1 species 1536773 Paenibacillus sp. FSL R7-0331 Paenibacillus sp. FSL H7-0737 1536775 species 1 2761 0 2092 0 1536774 Paenibacillus sp. FSL H7-0357 1 species 1941 0 324057 Paenibacillus sp. JDR-2 1 species 3921 0 Paenibacillus sp. IHBB 10380 1566358 species 1 species 1 Paenibacillus sp. 32O-W 1695218 0 818 44251 Paenibacillus durus 1 species 2890 0 0 2224 species 1 Paenibacillus terrae 159743 0 3091 1 species 1763538 Paenibacillus crassostreae 0 1501 species 1 Paenibacillus yonginensis 1462996 3030 0 Paenibacillus odorifer 189426 species 1 1322 0 1126833 Paenibacillus beijingensis 1 species Paenibacillus borealis 160799 species 1 3201 0 0 2029 species 1 Paenibacillus stellifer 169760 Paenibacillus xylanexedens 528191 species 1 2060 0 0 146542 41 family 90964 1 Staphylococcaceae 1707 2005363 genus 1 1445 0 1 species 1849491 Auricoccus indicus 0 1445 0 8283 genus 4 Macrococcus 1 69965 24 0 1817 species 1 Macrococcus caseolyticus 69966 species 1 Macrococcus canis 1855823 0 1750 2619255 no rank 1 4692 0 1898474 Macrococcus sp. IME1552 1 species 4692 0 920 0 6 45669 1 Salinicoccus 2 genus species 1 Salinicoccus halodurans 407035 0 914 134187 0 1 Staphylococcus 1279 1193 genus 33 1 species 29382 Staphylococcus cohnii 0 3836 Staphylococcus saprophyticus 29385 species 1 3916 0 3866 0 91994 1 no rank Staphylococcus sp. AntiMn-1 1715860 species 1 3866 0 species 1 Staphylococcus succinus 61015 0 2665 2058 0 46127 Staphylococcus felis 1 species 155085 Staphylococcus lutrae 1 species 1064 0 214473 Staphylococcus nepalensis 1 species 4686 0 28035 Staphylococcus lugdunensis 1 species 3068 0 species 1 Staphylococcus stepanovicii 643214 0 4222 2689 0 283734 Staphylococcus pseudintermedius 1 species 1292 Staphylococcus warneri 1 species 2675 0 0 8040 species 1 Staphylococcus xylosus 1288 3639 0 1295 Staphylococcus schleiferi 1 species species 1 Staphylococcus haemolyticus 1283 0 4894 5725 0 Staphylococcus argenteus 985002 species 1 1 species 985762 Staphylococcus agnetis 0 2164 species 1 Staphylococcus hominis 1290 0 3563 Staphylococcus hyicus 1284 species 1 2304 0 1 species 170573 Staphylococcus pettenkoferi 0 1559 0 3079 1 species 29388 Staphylococcus capitis Staphylococcus pasteuri 45972 species 1 8891 0 4192 0 1281 Staphylococcus carnosus 1 species Staphylococcus muscae 1294 species 1 2095 0 Staphylococcus piscifermentans 70258 species 1 2465 0 Staphylococcus condimenti 70255 species 1 4107 0 1 species 1296 Staphylococcus sciuri 0 3962 Staphylococcus equorum 246432 species 1 6111 0 0 3093 species 1 Staphylococcus simulans 1286 0 8028 species 1 Staphylococcus epidermidis 1282 12489 0 Staphylococcus aureus 1280 species 1 308354 Staphylococcus simiae 1 species 5409 0 29384 Staphylococcus kloosii 1 species 2440 0 237 186820 Listeriaceae 1 9 family 32928 0 30418 0 1 Listeria 1637 175 genus 6 0 4681 1 species 1640 Listeria seeligeri 0 4100 1 species 1638 Listeria ivanovii 0 4507 species 1 Listeria innocua 1642 species 1 Listeria monocytogenes 1639 0 13093 species 1 Listeria welshimeri 1643 0 3862 2 2755 Brochothrix 1 2 genus 2273 0 2756 Brochothrix thermosphacta 1 species 2271 0 5404 0 Alicyclobacillaceae 1 186823 26 family 9 0 1362 2 genus 8 29330 Alicyclobacillus 1 Alicyclobacillus acidocaldarius 405212 species 1 1354 0 genus 3 50 Tumebacillus 1 432330 0 2732 0 1706 1 species 1903704 Tumebacillus avium 0 976 1 species 1214604 Tumebacillus algifaecis 3 genus 1129704 1 Kyrpidia 24 0 1284 614 0 Kyrpidia sp. EA-1 2055160 species 1 1 species 33943 Kyrpidia tusciae 0 646 26 family 59 186818 1 Planococcaceae 0 47462 1372 Planococcus 1 77 12 genus 15135 0 1178 0 Planococcus kocurii 1374 species 1 species 1 Planococcus faecalis 1598147 0 1422 451 0 Planococcus plakortidis 1038856 species 1 1215089 Planococcus halocryophilus 1 species 892 0 414778 Planococcus donghaensis 1 species 1603 0 2854 0 2662419 no rank 2 0 1815 species 1 Planococcus sp. PAMC 21323 1526927 1039 0 2058136 Planococcus sp. MB-3u-03 1 species 0 2692 species 1 Planococcus sp. L10.15 1302659 694 0 Planococcus antarcticus 161360 species 1 200991 Planococcus rifietoensis 1 species 1251 0 2021 0 192421 Planococcus maritimus 1 species genus 2 3 Kurthia 1 1649 0 4386 2644826 no rank 1 4383 0 0 4383 species 1 Kurthia sp. 11kri321 1750719 2 genus 157226 1 Jeotgalibacillus 6 0 3490 1508404 Jeotgalibacillus malaysiensis 1 species 3484 0 11434 0 116 1 Sporosarcina 1569 genus 5 1757 0 Sporosarcina psychrophila 1476 species 1 7452 0 1571 Sporosarcina ureae 1 species 2647733 no rank 2 2109 0 0 954 1 species 1930546 Sporosarcina sp. P37 0 1155 species 1 Sporosarcina sp. P33 1930764 3 genus 648800 1 Solibacillus 31 0 10038 4502 0 2637870 1 no rank 4502 0 Solibacillus sp. R5-41 2048654 species 1 species 1 Solibacillus silvestris 76853 0 5505 genus 1 648802 0 2920 species 1 Rummeliibacillus stabekisii 241244 0 2920 0 1014 2 family 186821 Sporolactobacillaceae 1 2 0 1012 no rank 1 663587 1012 0 85683 [Bacillus] selenitireducens 1 species 1028 0 1 1 Thermoactinomycetaceae 186824 family 4 1677050 1 Novibacillus 44 2 genus 1020 0 1471761 Novibacillus thermophilus 1 species 976 0 292635 Laceyella 1 genus 7 0 539002 9 no rank 7606 0 539742 7 no rank 5314 0 1 Exiguobacterium 33986 100 genus 7 5314 0 no rank 4 2644629 0 3629 Exiguobacterium sp. U13-1 1849031 species 1 1273 0 0 1245 1 species 1224749 Exiguobacterium sp. ZWU0009 698 0 1399115 Exiguobacterium sp. MH3 1 species 360911 Exiguobacterium sp. AT1b 1 species 413 0 1 species 332410 Exiguobacterium sibiricum 0 704 Exiguobacterium antarcticum 132920 species 1 881 0 2 no rank 539738 0 2292 2292 0 Gemella 1 1378 1 genus 2 1 no rank 2624949 0 2291 0 2291 species 1 Gemella sp. oral taxon 928 1785995 order 165 1 Lactobacillales 186826 9875 0 634780 63161 0 1 Enterococcaceae 81852 81 family 20 1 Tetragenococcus 51668 3 genus 2 6210 0 0 6207 1 species 51669 Tetragenococcus halophilus 4033 0 2 1 Melissococcus 33969 genus 2 33970 Melissococcus plutonius 1 species 4031 0 genus 3 1 Vagococcus 2737 12 0 7836 0 3612 species 1 Vagococcus teuberi 519472 4212 0 633807 Vagococcus penaei 1 species 45001 0 1 Enterococcus 1350 1755 genus 12 3769 0 Enterococcus mundtii 53346 species 1 0 15195 1 species 1352 Enterococcus faecium 1 species 1351 Enterococcus faecalis 0 7452 2879 0 Enterococcus wangshanyuanii 2005703 species 1 0 3764 species 1 Enterococcus hirae 1354 0 3644 3 no rank 2608891 2060306 Enterococcus sp. FDAARGOS_163 1 species 959 0 0 1454 species 1 Enterococcus sp. FDAARGOS_375 2060307 species 1 Enterococcus sp. CR-Ec1 2057791 0 1231 species 1 Enterococcus durans 53345 0 2935 37734 Enterococcus casseliflavus 1 species 1492 0 species 1 Enterococcus thailandicus 417368 0 2116 family 11 6 1 Carnobacteriaceae 186828 0 22031 3414 0 191769 1 Marinilactibacillus 6 2 genus 2632303 1 no rank 3408 0 0 3408 species 1 Marinilactibacillus sp. 15R 1911586 5 genus 89 2747 1 Carnobacterium 0 14614 1 species 2751 Carnobacterium maltaromaticum 0 3878 Carnobacterium inhibens 147709 species 1 3802 0 6845 0 257487 no rank 2 1564681 Carnobacterium sp. CP1 1 species 1463 0 0 5382 1 species 208596 Carnobacterium sp. 17-4 0 3997 genus 3 25 Jeotgalibaca 1 1470540 2621505 1 no rank 1858 0 1 species 1903686 Jeotgalibaca sp. PTS2502 0 1858 2114 0 Jeotgalibaca dankookensis 708126 species 1 1300 Streptococcaceae 1 2616 49 family 384868 0 43 genus 10719 1301 Streptococcus 1 0 365681 Streptococcus pseudopneumoniae 257758 species 1 6187 0 1309 Streptococcus mutans 1 species 4682 0 1 species 1348 Streptococcus parauberis 0 4549 6328 0 119603 species group 2 3696 0 Streptococcus equi 1336 species 1 species 1 Streptococcus dysgalactiae 1334 0 2632 40079 0 671232 species group 3 0 23562 species 1 Streptococcus anginosus 1328 Streptococcus intermedius 1338 species 1 5949 0 0 10568 species 1 Streptococcus constellatus 76860 0 31022 species 1 Streptococcus parasanguinis 1318 0 4100 species 1 Streptococcus pyogenes 1314 0 10343 species 1 Streptococcus sanguinis 1305 0 1965 1 species 1346 Streptococcus iniae 0 2614 species 1 Streptococcus pantholopis 1811193 species 1 Streptococcus infantarius 102684 0 8650 45634 Streptococcus cristatus 1 species 6165 0 1 species 28037 Streptococcus mitis 0 23715 Streptococcus suis 1307 species 1 18161 0 0 1640 1 species 400065 Streptococcus merionis 0 15972 species 1 Streptococcus agalactiae 1311 Streptococcus macedonicus 59310 species 1 2389 0 22427 0 Streptococcus salivarius 1304 species 1 0 4680 species 1 Streptococcus pasteurianus 197614 1 species 1888195 Streptococcus himalayensis 0 1113 0 1967 species 1 Streptococcus marmotae 1825069 2916 0 1326 Streptococcus acidominimus 1 species 7620 0 150055 Streptococcus lutetiensis 1 species Streptococcus pluranimalium 82348 species 1 2720 0 0 4784 1 species 1335 Streptococcus equinus 5197 0 1308 Streptococcus thermophilus 1 species 15345 0 1313 Streptococcus pneumoniae 1 species 1 species 1349 Streptococcus uberis 0 3545 6033 0 Streptococcus gallolyticus 315405 species 1 species 1 Streptococcus halotolerans 1814128 0 1736 2608887 no rank 7 57910 0 Streptococcus sp. 'group B' 1319 species 1 2100 0 Streptococcus sp. FDAARGOS_192 1839799 species 1 6698 0 Streptococcus sp. A12 1759399 species 1 6722 0 1156433 Streptococcus sp. I-P16 1 species 13817 0 0 9883 species 1 Streptococcus sp. oral taxon 431 712633 Streptococcus sp. NPS 308 1902136 species 1 5259 0 species 1 Streptococcus sp. I-G2 1156431 0 13431 16582 0 1303 Streptococcus oralis 1 species 1302 Streptococcus gordonii 1 species 11826 0 5 genus 17 1357 Lactococcus 1 0 16571 0 2716 1 species 1366 Lactococcus raffinolactis 1849 0 1364 Lactococcus piscium 1 species Lactococcus lactis 1358 species 1 9729 0 2260 0 1363 Lactococcus garvieae 1 species 21 1 Leuconostocaceae 81850 family 17 21844 0 1243 1 Leuconostoc 51 9 genus 13426 0 1 species 1244 Leuconostoc gelidum 0 2282 0 2961 species 1 Leuconostoc mesenteroides 1245 0 969 species 1 Leuconostoc citreum 33964 2354 0 Leuconostoc carnosum 1252 species 1 2161 0 Leuconostoc kimchii 136609 species 1 1158 0 2685106 1 no rank Leuconostoc sp. C2 979982 species 1 1158 0 0 1284 1 species 1246 Leuconostoc lactis species 1 Leuconostoc garlicum 255248 0 206 6 genus 46255 1 Weissella 14 0 7390 1 species 137591 Weissella cibaria 0 2151 1875 0 165096 Weissella koreensis 1 species 0 1254 1 species 759620 Weissella ceti 1 species 1249 Weissella paramesenteroides 0 1061 0 1035 1 species 1631871 Weissella jogaejeotgali 46254 1 genus 1007 0 1007 0 1247 Oenococcus oeni 1 species 0 3275 no rank 1 263855 3275 0 Lactobacillales bacterium 1993866 species 1 0 9153 family 8 11 1 Aerococcaceae 186827 1375 1 Aerococcus 49 7 genus 9142 0 0 2076 species 1 Aerococcus viridans 1377 species 1 Aerococcus urinaeequi 51665 0 2799 0 1451 species 1 Aerococcus urinae 1376 119206 Aerococcus sanguinicola 1 species 627 0 species 1 Aerococcus christensenii 87541 0 1026 0 1114 species 1 Aerococcus urinaehominis 128944 1 Lactobacillaceae 33958 273 family 58 120573 0 1253 Pediococcus 1 22 6 genus 10094 0 3220 0 Pediococcus pentosaceus 1255 species 1 1514 0 114090 Pediococcus inopinatus 1 species 51663 Pediococcus damnosus 1 species 1959 0 2118 0 1670797 species group 1 1 species 1254 Pediococcus acidilactici 0 2118 187452 Pediococcus claussenii 1 species 1261 0 0 2064 1 genus 2767890 1193095 Lactobacillus hokkaidonensis 1 species 2064 0 19165 0 2767887 4 genus 9625 0 Lactobacillus salivarius 1624 species 1 Lactobacillus ruminis 1623 species 1 7095 0 903 0 Lactobacillus acidipiscis 89059 species 1 Lactobacillus agilis 1601 species 1 1542 0 1 Lactobacillus 1578 1560 genus 16 39067 0 7118 0 Lactobacillus johnsonii 33959 species 1 984 0 83683 Lactobacillus amylolyticus 1 species 2297 0 267818 Lactobacillus kefiranofaciens 1 species 0 1000 species 1 Lactobacillus acetotolerans 1600 5266 0 1596 Lactobacillus gasseri 1 species species 1 Lactobacillus jensenii 109790 0 1607 4 no rank 2620435 0 4430 Lactobacillus sp. CBA3606 2099789 species 1 577 0 2099788 Lactobacillus sp. CBA3605 1 species 2179 0 364 0 Lactobacillus sp. D1501 2108362 species 1 1310 0 1545702 Lactobacillus sp. wkB8 1 species 1 species 52242 Lactobacillus gallinarum 0 2300 1 species 1579 Lactobacillus acidophilus 0 3705 0 3597 1 species 1604 Lactobacillus amylovorus 0 3633 species 1 Lactobacillus helveticus 1587 1570 0 1584 Lactobacillus delbrueckii 1 species 2767877 1 genus 425 0 425 0 148814 Lactobacillus kunkeei 1 species 2767876 1 genus 1335 0 0 1335 1 species 1603 Lactobacillus amylophilus 0 1581 3 genus 2767886 0 265 species 1 Lactobacillus zymae 267363 0 281 species 1 Lactobacillus koreensis 637971 0 1035 species 1 Lactobacillus brevis 1580 0 4074 3 genus 2767893 946 0 1581 Lactobacillus buchneri 1 species 1138822 Lactobacillus curieae 1 species 2144 0 1 species 152331 Lactobacillus parabuchneri 0 984 523 0 2767892 1 genus 0 523 1 species 240427 Lactobacillus paracollinoides 0 2378 2 genus 2767881 1625 Lactobacillus sanfranciscensis 1 species 1290 0 1 species 53444 Lactobacillus lindneri 0 1088 2 genus 2767885 0 3162 0 697 1 species 28038 Lactobacillus curvatus 2465 0 Lactobacillus sakei 1599 species 1 17696 0 2767879 6 genus 1007676 Lactobacillus ginsenosidimutans 1 species 1961 0 1 species 392416 Lactobacillus crustorum 0 3231 Lactobacillus farciminis 1612 species 1 3288 0 0 4438 species 1 Lactobacillus allii 1847728 Lactobacillus alimentarius 1602 species 1 2630 0 0 2148 species 1 Lactobacillus heilongjiangensis 1074467 2767842 genus 3 4491 0 0 598 species 1 Lactobacillus paraplantarum 60520 2362 0 1590 Lactobacillus plantarum 1 species 1 species 1589 Lactobacillus pentosus 0 1531 4593 0 2742598 3 genus 0 580 1 species 1613 Lactobacillus fermentum Lactobacillus reuteri 1598 species 1 2179 0 1 species 97478 Lactobacillus mucosae 0 1834 2759736 genus 3 6005 0 0 1087 species 1 Lactobacillus paracasei 1597 2516 0 47715 Lactobacillus rhamnosus 1 species species 1 Lactobacillus casei 1582 0 2402 3647 0 2767889 2 genus 1584 0 1610 Lactobacillus coryniformis 1 species 2063 0 Lactobacillus backii 375175 species 1 0 1105 5 class 4 1676648 Limnochordia 1 1101 0 Limnochordales 1 1676649 10 order 4 0 1091 family 3 7 Limnochordaceae 1 1676650 0 1084 2 genus 1676651 1 Limnochorda 19 0 1065 species 1 Limnochorda pilosa 1555112 33974 2 no rank 787 0 13 1 Ndongobacter 1930845 genus 2 787 0 774 0 1871025 Ndongobacter massiliensis 1 species 16581 0 508458 phylum 10 649775 1 Synergistia 31 10 class 16581 0 1 Synergistales 649776 20 order 9 16550 0 1 Synergistaceae 649777 6714 family 8 16530 0 0 509 1 genus 49894 0 509 1 species 97477 Acetomicrobium mobile 0 630 1 genus 336260 Thermovirga lienii 336261 species 1 630 0 2 genus 508459 Cloacibacillus 1 5 0 7335 0 7330 species 1 Cloacibacillus porcorum 1197717 0 344 2 genus 81461 Thermanaerovibrio 1 4 species 1 Thermanaerovibrio acidaminovorans 81462 0 340 998 0 81466 genus 1 998 0 81468 Aminobacterium colombiense 1 species 9 phylum 1 74152 Elusimicrobia 1 0 2434 447830 class 5 911 0 911 0 1 1783344 1 Endomicrobiales 5 order 910 0 1783343 1 Endomicrobiaceae 2 4 family 1 1 Endomicrobium 1408194 genus 3 908 0 487 0 1408204 Candidatus Endomicrobium trichonymphae 1 species 1 species 1408281 Endomicrobium proavitum 0 420 1 no rank 99260 0 478 0 478 1 species 167965 uncultured Termite group 1 bacterium 1044 0 641853 class 2 1044 0 1 641854 1 Elusimicrobiales 2 order 0 1043 1 family 641876 1 genus 423604 0 1043 0 1043 species 1 Elusimicrobium minutum 423605 1783270 clade 363 3032317 0 0 3026778 clade 350 68336 2345 0 1134404 phylum 7 7 class 795747 1 Ignavibacteria 7 0 2345 0 2338 order 6 9 1 Ignavibacteriales 795748 10 1 Ignavibacteriaceae 795749 family 3 901 0 1 Ignavibacterium 795750 1 genus 2 891 0 species 1 Ignavibacterium album 591197 0 890 1428 0 1334117 family 2 1428 0 Melioribacter 1 1134403 14 genus 2 1414 0 Melioribacter roseus 1134405 species 1 0 10694 phylum 22 1090 0 10694 class 22 1 Chlorobia 191410 118 100 1 Chlorobiales 191411 order 21 10576 0 family 20 Chlorobiaceae 1 191412 142 0 10476 0 4943 no rank 8 274493 genus 5 1 Chlorobium 1091 7 0 3278 337090 Chlorobium chlorochromatii 1 species 804 0 698 0 1092 Chlorobium limicola 1 species 1 species 1096 Chlorobium phaeobacteroides 0 1294 0 475 species 1 Chlorobium phaeovibrioides 1094 3 genus 39 1099 Pelodictyon 1 0 1665 1 species 34090 Pelodictyon phaeoclathratiforme 0 1006 620 0 1100 Pelodictyon luteolum 1 species 2684 0 Chlorobaculum 1 256319 27 genus 4 0 741 species 1 Chlorobaculum tepidum 1097 1 species 274537 Chlorobaculum limnaeum 0 926 274539 Chlorobaculum parvum 1 species 990 0 0 334 genus 2 10 1 Chloroherpeton 100715 100716 Chloroherpeton thalassium 1 species 324 0 0 2373 genus 5 25 Prosthecochloris 1 1101 455 0 Prosthecochloris aestuarii 1102 species 1 1893 0 2632826 3 no rank 281093 Prosthecochloris sp. GSB1 1 species 513 0 1 species 1974213 Prosthecochloris sp. HL-130-GSB 0 1068 0 312 1 species 1868325 Prosthecochloris sp. CIB 2401 321 phylum 976 1 Bacteroidetes 77 0 3013739 7 order 1100069 Bacteroidetes Order II. Incertae sedis 1 63 0 3963 563843 Rhodothermaceae 1 30 6 family 3900 0 genus 2 3 1 Salinibacter 146918 0 634 species 1 Salinibacter ruber 146919 0 631 1528 0 1196022 no rank 1 1528 0 1779382 Rhodothermaceae bacterium RA 1 species 1708 0 1 Rhodothermus 29548 8 genus 2 0 1700 1 species 29549 Rhodothermus marinus 23 class 117747 1 Sphingobacteriia 11 0 38833 0 38822 order 22 11 1 Sphingobacteriales 200666 family 21 56 1 Sphingobacteriaceae 84566 0 38811 4 genus 15 423349 Mucilaginibacter 1 0 5042 0 1499 1 species 1234841 Mucilaginibacter sp. BJC16-A31 species 1 Mucilaginibacter gotjawali 1550579 0 2141 1387 0 2617802 no rank 1 species 1 Mucilaginibacter sp. PAMC 26640 1300914 0 1387 genus 6 3 1 Pedobacter 84567 0 13775 1 no rank 2628915 0 3129 3129 0 Pedobacter sp. PACM 27299 1727164 species 1 0 2441 1 species 363852 Pedobacter ginsengisoli Pedobacter heparinus 984 species 1 2082 0 species 1 Pedobacter steynii 430522 0 2886 0 3234 1 species 188932 Pedobacter cryoconitis 2874 0 929509 1 Solitalea 2 2 genus 2872 0 995 Solitalea canadensis 1 species 2522 0 1649482 genus 1 species 1 Pseudopedobacter saltans 151895 0 2522 0 12030 6 genus 28453 Sphingobacterium 1 23 1010 Sphingobacterium mizutaii 1 species 3621 0 0 8386 4 no rank 2609468 1 species 2003121 Sphingobacterium sp. G1-14 0 2241 1774 0 Sphingobacterium sp. ML3W 1538644 species 1 0 1826 1 species 743722 Sphingobacterium sp. 21 2545 0 Sphingobacterium sp. B29 1933220 species 1 2512 0 84568 1 no rank species 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 0 2512 0 59119 class 57 1 Cytophagia 768503 103 order 56 Cytophagales 1 768507 190 0 59016 506 0 1 Amoebophilaceae 1 1501348 family 4 1 281119 Candidatus Amoebophilus 1 2 genus 188 0 1 species 281120 Candidatus Amoebophilus asiaticus 0 187 273135 1 genus 317 0 2641185 1 no rank 317 0 317 0 249402 Cardinium endosymbiont of Encarsia pergandiella 1 species 25 563798 1 Cyclobacteriaceae 9 family 5709 0 genus 2 1 Algoriphagus 246875 1 0 639 1 species 1727163 Algoriphagus sp. M8-2 0 638 genus 3 1 1 Cyclobacterium 68288 0 1774 556 0 Cyclobacterium marinum 104 species 1 1217 0 Cyclobacterium amurskyense 320787 species 1 genus 1 232244 0 1502 232259 Belliella baltica 1 species 1502 0 1769 0 1 390846 1 Echinicola 2 genus 390884 Echinicola vietnamensis 1 species 1768 0 family 2 1937968 0 2530 2 genus 6 1937972 1 Bernardetia 0 2530 species 1 Bernardetia litoralis 999 0 2524 1 Cytophagaceae 89373 34 family 15 14893 0 0 6049 6 genus 101 107 Spirosoma 1 Spirosoma aerolatum 1211326 species 1 1146 0 Spirosoma sp. HA7 2057025 species 1 1714 0 Spirosoma rigui 564064 species 1 891 0 1477 0 1178516 Spirosoma montaniterrae 1 species 1 species 1379870 Spirosoma radiotolerans 0 720 1551 0 319458 genus 1 1551 0 316068 Leadbetterella byssophila 1 species 0 1865 genus 2 1 1 Cytophaga 978 0 1864 species 1 Cytophaga hutchinsonii 985 1384 0 3 1 Fibrella 861914 genus 2 2620963 no rank 1 1381 0 1 species 1834519 Fibrella sp. ES10-3-2-2 0 1381 genus 1 120831 0 2552 2552 0 Dyadobacter fermentans 94254 species 1 1458 0 Runella 1 105 7 genus 2 1451 0 106 Runella slithyformis 1 species 2014 0 2762301 family 2 0 2014 2 genus 869806 1 Marivirga 1 0 2013 species 1 Marivirga tractuosa 1006 0 25693 family 16 84 1 Hymenobacteraceae 1853232 3 genus 6 323449 1 Pontibacter 0 4889 species 1 Pontibacter akesuensis 388950 0 2008 400092 Pontibacter korlensis 1 species 2875 0 89966 1 Hymenobacter 122 8 genus 14113 0 1887 0 Hymenobacter swuensis 1446467 species 1 2085 0 1411621 Hymenobacter sedentarius 1 species 2615202 5 no rank 10019 0 1 species 1484118 Hymenobacter sp. PAMC 26628 0 2474 Hymenobacter sp. DG25A 1385663 species 1 1216 0 1 species 1356852 Hymenobacter sp. APR13 0 2139 2418 0 Hymenobacter sp. PAMC 26554 1484116 species 1 1385664 Hymenobacter sp. DG25B 1 species 1772 0 6607 0 1 Rufibacter 1379908 49 genus 4 1 species 512763 Rufibacter tibetensis 0 2678 no rank 2 2639626 0 3880 0 1976 1 species 1379909 Rufibacter sp. DG15C 0 1904 species 1 Rufibacter sp. DG31D 1379910 4 family 7 200667 Flammeovirgaceae 1 0 4763 genus 2 Flammeovirga 1 59739 4 0 3557 2637820 1 no rank 3553 0 1 species 1191459 Flammeovirga sp. MY04 0 3553 no rank 1 340671 0 1199 species 1 Flammeovirgaceae bacterium 311 1257021 0 1199 family 3 1 1 Persicobacteraceae 1853234 0 2718 10 Persicobacter 1 59740 genus 2 2717 0 no rank 1 2664020 0 2707 2707 0 Persicobacter sp. JZB09 1085624 species 1 Bacteroidia 1 200643 155 class 69 2665545 0 0 2656731 order 57 1 Bacteroidales 171549 706 0 16948 family 4 5 1 Porphyromonadaceae 171551 16943 0 836 Porphyromonas 1 6 3 genus 1 species 28123 Porphyromonas asaccharolytica 0 5115 1 species 837 Porphyromonas gingivalis 0 11822 185291 1 no rank 1294 0 1294 0 1400053 Bacteroidales bacterium CF 1 species no rank 4 333046 0 1076393 genus 3 909656 0 1074159 57921 0 376805 Bacteroides salanitronis 1 species species 1 Bacteroides vulgatus 821 0 818308 197930 0 Bacteroides dorei 357276 species 1 511434 1 genus 2234 0 2234 0 511435 Candidatus Azobacteroides pseudotrichonymphae 1 species 0 45191 family 3 Barnesiellaceae 1 2005519 5 27 397864 Barnesiella 1 2 genus 45186 0 1 species 397865 Barnesiella viscericola 0 45159 family 11 152 1 Prevotellaceae 171552 0 764167 764015 0 1632 Prevotella 1 838 genus 10 1 species 52227 Prevotella dentalis 0 58813 0 41196 species 1 Prevotella enoeca 76123 0 63191 species 1 Prevotella denticola 28129 0 103211 species 1 Prevotella ruminicola 839 species 1 Prevotella melaninogenica 28132 0 120724 589436 Prevotella fusca 1 species 106651 0 1177574 Prevotella jejuni 1 species 104610 0 23762 0 2638335 no rank 1 0 23762 1 species 652716 Prevotella sp. oral taxon 299 1 species 28131 Prevotella intermedia 0 140225 6 family 2005520 0 14138 0 4494 2 genus 12 307628 Petrimonas 1 1642646 Petrimonas mucosa 1 species 4482 0 4804 0 7 294702 Proteiniphilum 1 2 genus species 1 Proteiniphilum saccharofermentans 1642647 0 4797 1 Fermentimonas 1784836 2 genus 2 4840 0 0 4838 1 species 1562970 Fermentimonas caenicola 186 2005525 1 Tannerellaceae 7 family 143389 0 genus 3 31 1 Tannerella 195950 0 13268 8012 0 Tannerella forsythia 28112 species 1 0 5225 no rank 1 2620507 Tannerella sp. oral taxon HOT-286 712710 species 1 5225 0 39 Parabacteroides 1 375288 genus 3 129935 0 83201 0 2649774 1 no rank 2025876 Parabacteroides sp. CT06 1 species 83201 0 species 1 Parabacteroides distasonis 823 0 46695 3 1 Paludibacteraceae 2005523 family 3 6338 0 6335 0 1 Paludibacter 346096 4 genus 2 species 1 Paludibacter propionicigenes 185300 0 6331 family 4 171550 0 33727 2591 0 3 1 Mucinivorans 1611681 genus 2 species 1 Mucinivorans hirudinis 1433126 0 2588 0 31136 genus 2 1 Alistipes 239759 169 1 species 214856 Alistipes finegoldii 0 30967 0 24934 2 family 1853231 5 Odoribacter 1 283168 genus 2 24934 0 24929 0 28118 Odoribacter splanchnicus 1 species 0 529506 family 11 Bacteroidaceae 1 815 85 genus 10 Bacteroides 1 816 22043 0 529421 0 22192 species 1 Bacteroides zoogleoformans 28119 0 38265 1 species 246787 Bacteroides cellulosilyticus 1 species 47678 Bacteroides caccae 0 56143 Bacteroides helcogenes 290053 species 1 21704 0 0 59950 1 species 1796613 Bacteroides caecimuris 0 21310 1 species 28113 Bacteroides heparinolyticus 0 124480 1 species 818 Bacteroides thetaiotaomicron 1 species 817 Bacteroides fragilis 0 88499 0 74835 species 1 Bacteroides ovatus 28116 8659 0 60 1970189 1 Marinilabiliales 11 order 1 1970190 1 Salinivirgaceae 2 family 1212 0 1211 0 1970191 genus 1 1307839 Salinivirga cyanobacteriivorans 1 species 1211 0 1 Marinilabiliaceae 558415 5 family 3 1905 0 1900 0 1 Alkalitalea 1193324 4 genus 2 1896 0 889453 Alkalitalea saponilacus 1 species 2938 0 2 1573805 Marinifilaceae 1 2 family 0 2936 genus 1 2060722 Marinifilaceae bacterium SPP2 1717717 species 1 2936 0 3 Prolixibacteraceae 1 1471398 family 3 2544 0 1471399 1 Draconibacterium 5 2 genus 2541 0 species 1 Draconibacterium orientale 1168034 0 2536 0 229433 class 142 68 Flavobacteriia 1 117743 order 141 1 Flavobacteriales 200644 536 0 229365 family 2 1 Ichthyobacteriaceae 1755828 1 0 443 1 genus 1755829 0 442 0 442 1 species 242600 Ichthyobacterium seriolicida 9 family 39782 0 3908 0 3908 genus 9 13 Blattabacterium 1 34098 0 350 species 1 Blattabacterium punctulatus 164514 1653831 Blattabacterium cuenoti 1 species 689 0 2647581 no rank 6 2856 0 0 195 species 1 Blattabacterium sp. (Blatta orientalis) 367806 813 0 Blattabacterium sp. (Blattella germanica) 624186 species 1 308 0 Blattabacterium sp. (Blaberus giganteus) 1186051 species 1 1316444 Blattabacterium sp. (Nauphoeta cinerea) 1 species 696 0 Blattabacterium sp. (Mastotermes darwiniensis) 39768 species 1 515 0 329 0 367488 Blattabacterium sp. (Periplaneta americana) 1 species family 21 2762318 0 52415 0 5382 genus 2 1 Ornithobacterium 28250 175 1 species 28251 Ornithobacterium rhinotracheale 0 5207 1263 0 1013 1 genus 1 species 1014 Weeksella virosa 0 1263 0 12497 6 genus 66 308865 1 Elizabethkingia 6299 0 Elizabethkingia anophelis 1117645 species 1 1267 0 1756150 Elizabethkingia genomosp. 4 1 species 0 1140 1 species 1756149 Elizabethkingia genomosp. 3 1757 0 238 Elizabethkingia meningoseptica 1 species 172045 Elizabethkingia miricola 1 species 1968 0 0 2049 2 genus 12 34084 1 Riemerella 1 species 34085 Riemerella anatipestifer 0 2037 31224 0 2782232 10 no rank genus 1 2782228 0 1888 1888 0 536441 Chryseobacterium taklimakanense 1 species 9 genus 59732 1 Chryseobacterium 81 0 29336 1824 0 558152 Chryseobacterium piperi 1 species 1817 0 Chryseobacterium camelliae 1265445 species 1 3460 0 Chryseobacterium glaciei 1685010 species 1 2593645 no rank 3 7531 0 1 species 878220 Chryseobacterium sp. StRB126 0 3036 2161 0 2015076 Chryseobacterium sp. T16E-39 1 species species 1 Chryseobacterium sp. IHB B 17019 1721091 0 2334 species 1 Chryseobacterium gallinarum 1324352 0 8429 6194 0 253 Chryseobacterium indologenes 1 species family 2 1333713 0 1069 2 genus 8 267986 1 Owenweeksia 0 1069 1061 0 253245 Owenweeksia hongkongensis 1 species family 3 1 Crocinitomicaceae 1853230 2 0 2387 0 2385 genus 2 16 1 Fluviicola 332102 species 1 Fluviicola taffensis 191579 0 2369 Flavobacteriaceae 1 49546 1208 family 101 167823 0 0 887 genus 2 1 Olleya 336276 1 2615019 no rank 1 886 0 0 886 species 1 Olleya sp. Bg11-27 2058135 1 genus 1209327 0 1715 1803846 Flavivirga eckloniae 1 species 1715 0 0 924 genus 1 153265 1 species 101385 Aequorivita sublithincola 0 924 2549 0 112040 Zobellia 1 2 2 genus 0 2547 species 1 Zobellia galactanivorans 63186 252356 1 Maribacter 1 5 genus 6971 0 0 5577 3 no rank 2615042 1314 0 Maribacter sp. HTCC2170 313603 species 1 2877 0 Maribacter sp. 1_2014MBL_MicDiv 1644130 species 1 1386 0 1836467 Maribacter sp. T28 1 species species 1 Maribacter cobaltidurans 1178778 0 1393 225842 Formosa 1 5 3 genus 2505 0 0 2500 no rank 2 2644710 1339 0 Formosa sp. Hel3_A1_48 1336795 species 1 1161 0 1336794 Formosa sp. Hel1_33_131 1 species 393005 1 genus 2474 0 1 species 2069432 Tamlana sp. UJ94 0 2474 5 genus 90 76831 Myroides 1 0 11406 2642485 2 no rank 5563 0 1458492 Myroides sp. ZB35 1 species 3037 0 0 2526 species 1 Myroides sp. A21 1583100 Myroides profundi 480520 species 1 2740 0 0 3013 species 1 Myroides odoratimimus 76832 1295 0 358023 genus 1 0 1295 1 species 1622118 Lutibacter profundi 3606 0 286104 2 genus 3606 0 2615021 2 no rank 850 0 1936080 Winogradskyella sp. J14-2 1 species 754409 Winogradskyella sp. PG-2 1 species 2756 0 61432 no rank 2 2776 0 0 837 species 1 Flavobacteriaceae bacterium 3519-10 531844 Flavobacteriaceae bacterium UJ101 1150389 species 1 1939 0 83612 genus 1 1049 0 57029 Psychroflexus torquis 1 species 1049 0 0 2422 1 genus 1518147 0 2422 species 1 Wenyingzhuangia fucanilytica 1790137 2656 0 2700084 genus 1 1850246 Lutibacter sp. LPB0138 1 species 2656 0 genus 15 302 1 Capnocytophaga 1016 0 29877 Capnocytophaga stomatis 1848904 species 1 1809 0 1018 Capnocytophaga ochracea 1 species 2037 0 45243 Capnocytophaga haemolytica 1 species 1323 0 Capnocytophaga leadbetteri 327575 species 1 2916 0 0 2684 1 species 1019 Capnocytophaga sputigena 2534 0 28189 Capnocytophaga cynodegmi 1 species 0 2874 species 1 Capnocytophaga canimorsus 28188 0 10562 no rank 6 2640652 1467 0 209053 Capnocytophaga sp. ChDC OS43 1 species 1924 0 Capnocytophaga sp. oral taxon 323 1705617 species 1 1000 0 1945658 Capnocytophaga sp. H4358 1 species 1 species 1945657 Capnocytophaga sp. H2931 0 1160 1 species 1316596 Capnocytophaga sp. oral taxon 878 0 3459 Capnocytophaga sp. oral taxon 864 1316593 species 1 1552 0 1017 Capnocytophaga gingivalis 1 species 2836 0 1649495 genus 1 2599 0 2622645 1 no rank 2599 0 2599 0 Seonamhaeicola sp. S2-3 1936081 species 1 7823 0 22 104264 1 Cellulophaga 4 genus 2687 0 979 Cellulophaga lytica 1 species 76594 Cellulophaga baltica 1 species 3562 0 1552 0 Cellulophaga algicola 59600 species 1 1 genus 417127 0 2642 2642 0 398743 Zunongwangia profunda 1 species 1109 0 1176327 genus 1 no rank 1 2636237 0 1109 1109 0 Aureitalea sp. RR4-38 2094025 species 1 0 10779 genus 5 Tenacibaculum 1 104267 2 2510 0 669041 Tenacibaculum dicentrarchi 1 species 0 2950 1 species 584609 Tenacibaculum jejuense 1 species 107401 Tenacibaculum maritimum 0 1745 1 species 1850252 Tenacibaculum todarodis 0 3572 0 1644 1 genus 178469 616991 Arenibacter algicola 1 species 1644 0 0 1170 1 genus 216431 313588 Croceibacter atlanticus 1 species 1170 0 1204360 1 genus 2045 0 Siansivirga zeaxanthinifaciens 762954 species 1 2045 0 261827 1 Algibacter 1 2 genus 2245 0 Algibacter alginicilyticus 1736674 species 1 2244 0 143222 1 genus 1935 0 1935 0 2633436 1 no rank 1935 0 1729720 Salegentibacter sp. T436 1 species 0 19954 genus 9 102 1 Flavobacterium 237 1713 0 Flavobacterium indicum 312277 species 1 0 3332 1 species 996 Flavobacterium columnare 1 species 986 Flavobacterium johnsoniae 0 4628 96345 Flavobacterium psychrophilum 1 species 2755 0 1 species 55197 Flavobacterium branchiophilum 0 1986 species 1 Flavobacterium crassostreae 1763534 0 1482 1 species 1306519 Flavobacterium commune 0 1807 1492737 Flavobacterium gilvum 1 species 2149 0 1210 0 252306 1 Robiginitalea 1 2 genus 0 1209 1 species 252307 Robiginitalea biformata 5262 0 2 1 Lacinutrix 291183 genus 4 0 2043 species 1 Lacinutrix venerupis 1486034 no rank 2 2647285 0 3217 0 2241 1 species 2057808 Lacinutrix sp. Bg11-31 983544 Lacinutrix sp. 5H-3-7-4 1 species 976 0 genus 1 389486 0 754 754 0 2648869 no rank 1 species 1 Sediminicola sp. YIK13 1453352 0 754 6 genus 51 52959 1 Polaribacter 0 13894 8158 0 196858 3 no rank Polaribacter sp. ALD11 2058137 species 1 4076 0 0 1657 1 species 1529069 Polaribacter sp. BM10 0 2425 species 1 Polaribacter sp. MED152 313598 0 3052 1 species 1774273 Polaribacter vadi 0 2633 1 species 996801 Polaribacter reichenbachii 3277 0 326319 Dokdonia 1 23 4 genus Dokdonia donghaensis 326320 species 1 1178 0 0 2076 2 no rank 2615033 0 643 1 species 313590 Dokdonia sp. MED134 983548 Dokdonia sp. 4H-3-7-5 1 species 1433 0 2 292691 Gramella 1 5 genus 6665 0 species 1 Gramella flava 1486245 0 1383 2126553 Gramella sp. SH35 1 species 1580 0 411153 Gramella forsetii 1 species 1955 0 1 species 1913577 Gramella sp. LPB0144 0 1745 5 genus 8 363408 1 Nonlabens 0 7061 2488 0 Nonlabens sediminis 319236 species 1 0 649 species 1 Nonlabens dokdonensis 328515 2615035 2 no rank 3916 0 1807 0 1476901 Nonlabens sp. MIC269 1 species 2058134 Nonlabens sp. MB-3u-79 1 species 2109 0 1 111500 1 Muricauda 3 genus 1435 0 species 1 Muricauda lutaonensis 516051 0 538 1 species 111501 Muricauda ruestringensis 0 896 784 0 313602 2 no rank 725 0 336809 1 genus 0 725 species 1 Candidatus Sulcia muelleri 336810 59 0 1940138 genus 1 1 species 1415657 Candidatus Walczuchella monophlebidarum 0 59 3053 0 2 1937959 Saprospiria 1 7 class 0 3051 order 6 1936988 3 family 1937961 1 Haliscomenobacteraceae 4 0 2093 2089 0 3 1 Haliscomenobacter 2349 genus 2 2086 0 Haliscomenobacter hydrossis 2350 species 1 4 89374 1 Saprospiraceae 3 family 958 0 0 954 2 genus 1007 Saprospira 1 16 0 938 species 1 Saprospira grandis 1008 0 13716 class 15 1 Chitinophagia 1853228 4 order 14 1 Chitinophagales 1853229 53 0 13712 13 family 563835 1 Chitinophagaceae 58 0 13659 0 1572 1 genus 1769012 2636138 no rank 1 1572 0 0 1572 1 species 1850526 Arachidicoccus sp. BS20 2 genus 649460 1 Filimonas 1 0 1533 1532 0 Filimonas lacunae 477680 species 1 398041 Flavisolibacter 1 12 2 genus 1687 0 Flavisolibacter tropicus 1492898 species 1 1675 0 2144 0 Niastella 1 354354 2 genus 2 Niastella koreensis 354356 species 1 2142 0 4242 0 79328 genus 2 79329 Chitinophaga pinensis 1 species 2584 0 Chitinophagaceae bacterium 13 2029983 species 1 1658 0 2423 0 Niabella 1 379899 5 genus 3 1 species 1176587 Niabella ginsenosidivorans 0 1282 1136 0 446683 Niabella soli 1 species 4 phylum 65842 0 1872 class 4 1 Fibrobacteria 204430 4 0 1872 0 1868 3 order 218872 1 Fibrobacterales 1 1867 0 204431 family 2 0 1867 genus 2 1 Fibrobacter 832 2 species 1 Fibrobacter succinogenes 833 0 1865 456828 1 phylum 951 0 0 951 genus 1 456826 species 1 Candidatus Cloacimonas acidaminovorans 456827 0 951 8 phylum 142182 0 2716 0 2716 class 8 13 1 Gemmatimonadetes 219685 0 2703 order 7 50 1 Gemmatimonadales 219686 family 6 1 Gemmatimonadaceae 219687 17 0 2653 0 883 2 genus 1706036 1 Gemmatirosa 9 861299 Gemmatirosa kalamazoonesis 1 species 874 0 104 Gemmatimonas 1 173479 genus 3 1753 0 665 0 1379270 Gemmatimonas phototrophica 1 species 173480 Gemmatimonas aurantiaca 1 species 984 0 2301751 0 1224 1 Proteobacteria 790 1980 phylum class 6 1807140 0 2082 1 Acidithiobacillales 225057 47 order 6 2082 0 2035 0 225058 Acidithiobacillaceae 1 7 5 family genus 4 1 Acidithiobacillus 119977 16 0 2028 1 species 33059 Acidithiobacillus caldus 0 584 0 623 1 species 160808 Acidithiobacillus ferrivorans Acidithiobacillus ferrooxidans 920 species 1 805 0 1 Oligoflexia 1553900 52 class 11 5058 0 1 Bdellovibrionales 213481 4 order 5 2925 0 0 2921 family 4 3 1 Bdellovibrionaceae 213483 3 genus 958 1 Bdellovibrio 3 0 2918 453816 Bdellovibrio exovorus 1 species 624 0 Bdellovibrio bacteriovorus 959 species 1 2291 0 0 2081 order 5 5 Bacteriovoracales 1 2024979 263369 2 family 1292 0 0 1292 genus 2 2 1 Bacteriovorax 146784 species 1 Bacteriovorax stolpii 960 0 1290 1652132 2 family 784 0 5 1652133 1 Halobacteriovorax 2 genus 784 0 species 1 Halobacteriovorax marinus 97084 0 779 0 213592 193 subphylum 68525 0 122233 72 class 29547 Epsilonproteobacteria 1 209 order 6 1 Nautiliales 1 235899 0 2214 493 0 2795691 2 family 0 493 2 genus 269258 Nitratiruptor 1 2 0 491 no rank 1 2624044 0 491 1 species 387092 Nitratiruptor sp. SB155-2 3 family 2 224467 1 Nautiliaceae 0 1720 191291 1 Nautilia 1 2 genus 1718 0 1717 0 244787 Nautilia profundicola 1 species 65 order 213849 1 Campylobacterales 1824 0 119810 4 family 2771471 0 2739 513 0 286130 genus 1 148813 Sulfuricurvum kujiense 1 species 513 0 2226 0 4 1 Sulfurimonas 202746 genus 3 0 1387 species 1 Sulfurimonas denitrificans 39766 202747 Sulfurimonas autotrophica 1 species 835 0 0 1604 family 4 2771472 535 0 269260 1 genus 1 species 269261 Nitratifractor salsuginis 0 535 8 265570 1 Sulfurovum 3 genus 1069 0 701 0 2646778 no rank 1 0 701 1 species 387093 Sulfurovum sp. NBC37-1 Sulfurovum lithotrophicum 206403 species 1 360 0 1 Helicobacteraceae 72293 5 family 15 11588 0 genus 2 3 1 Wolinella 843 0 444 441 0 844 Wolinella succinogenes 1 species 8 1 Helicobacter 209 genus 12 11139 0 species 1 Helicobacter acinonychis 212 0 508 0 692 species 1 Helicobacter mustelae 217 372 0 Helicobacter bilis 37372 species 1 0 1017 species 1 Helicobacter typhlonius 76936 427 0 2593540 1 no rank 427 0 222136 Helicobacter sp. MIT 01-6242 1 species Helicobacter cetorum 138563 species 1 612 0 0 456 species 1 Helicobacter felis 214 282 0 1591088 Helicobacter himalayensis 1 species 210 Helicobacter pylori 1 species 5135 0 0 949 species 1 Helicobacter hepaticus 32025 1 species 213 Helicobacter cinaedi 0 681 family 41 2558 1 Campylobacteraceae 72294 0 102055 1 Sulfurospirillum 57665 32 genus 9 11556 0 species 1 Sulfurospirillum barnesii 44674 0 1015 398 0 194424 Sulfurospirillum halorespirans 1 species 1 species 66821 Sulfurospirillum multivorans 0 1058 7051 0 2618290 no rank 3 220622 Sulfurospirillum sp. JPD-1 1 species 1076 0 0 1591 1 species 1986224 Sulfurospirillum sp. SL2-1 0 4384 1 species 1581011 Sulfurospirillum sp. UCH001 1 species 366522 Sulfurospirillum cavolei 0 607 0 1395 species 1 Sulfurospirillum deleyianum 65553 1 Campylobacter 194 489 genus 26 73254 0 0 2228 species 1 Campylobacter ureolyticus 827 396 0 200 Campylobacter curvus 1 species 198 Campylobacter hyointestinalis 1 species 1462 0 1 species 1965231 Campylobacter pinnipediorum 0 3711 Campylobacter peloridis 488546 species 1 2182 0 Campylobacter lari 201 species 1 5365 0 902 0 1244531 Campylobacter iguaniorum 1 species 1884 0 Campylobacter subantarcticus 497724 species 1 species 1 Campylobacter hominis 76517 0 780 3590 0 196 Campylobacter fetus 1 species species 1 Campylobacter coli 195 0 19678 1031542 Campylobacter volucris 1 species 1031 0 species 1 Campylobacter cuniculorum 374106 0 588 199 0 824 Campylobacter gracilis 1 species 206 Campylobacter sputorum 1 species 2847 0 199 Campylobacter concisus 1 species 1780 0 1 species 28898 Campylobacter helveticus 0 304 species 1 Campylobacter insulaenigrae 260714 0 2260 2593542 no rank 4 4970 0 0 1870 1 species 1660073 Campylobacter sp. RM6137 458 0 1660076 Campylobacter sp. RM12175 1 species 0 1440 species 1 Campylobacter sp. RM16704 1500960 Campylobacter sp. RM8964 1660074 species 1 1202 0 14706 0 Campylobacter jejuni 197 species 1 1098 0 Campylobacter lanienae 75658 species 1 0 804 1 species 522485 Campylobacter avium no rank 5 2321108 0 14687 8 28196 1 Arcobacter 3 genus 9310 0 28199 Arcobacter nitrofigilis 1 species 3990 0 species 1 Arcobacter butzleri 28197 0 5312 2906 0 2321207 no rank 1 944547 Arcobacter sp. L 1 species 2906 0 1 genus 2321187 0 2471 2471 0 Arcobacter sp. LPB0137 1850254 species 1 28221 1 Deltaproteobacteria 203 121 class 91359 0 order 4 15 1 Desulfarculales 453227 0 1399 6 Desulfarculaceae 1 453228 family 3 1384 0 1378 0 8 1 Desulfarculus 453229 genus 2 0 1370 species 1 Desulfarculus baarsii 453230 43 Desulfobacterales 1 213118 order 18 8431 0 0 4351 8 family 213121 1 Desulfobulbaceae 3 0 772 2 genus 2 53318 Desulfocapsa 1 1 species 65555 Desulfocapsa sulfexigens 0 770 109168 genus 1 1192 0 species 1 Desulfotalea psychrophila 84980 0 1192 1205 0 1 Desulfurivibrio 427922 6 genus 2 1199 0 427923 Desulfurivibrio alkaliphilus 1 species 0 1179 2 genus 893 1 Desulfobulbus 8 Desulfobulbus sp. ORNL 1986146 species 1 1171 0 17 213119 1 Desulfobacteraceae 9 family 4037 0 643 0 2295 1 Desulfobacterium 2 2 genus 1 species 2296 Desulfobacterium autotrophicum 0 641 654 0 28222 genus 1 Desulfobacula toluolica 28223 species 1 654 0 218207 1 Desulfatibacillum 4 2 genus 619 0 1 species 259354 Desulfatibacillum alkenivorans 0 615 3 genus 896 1 Desulfococcus 4 0 2104 1 species 181663 Desulfococcus oleovorans 0 1255 845 0 897 Desulfococcus multivorans 1 species 9 1 Syntrophobacterales 213462 order 8 2801 0 6 213465 1 Syntrophobacteraceae 3 family 653 0 7 29526 Syntrophobacter 1 2 genus 647 0 1 species 119484 Syntrophobacter fumaroxidans 0 640 family 4 213468 0 2139 824 0 2357 1 genus 0 824 species 1 Desulfomonile tiedjei 2358 2 genus 43773 1 Syntrophus 3 0 439 species 1 Syntrophus aciditrophicus 316277 0 436 60892 1 genus 876 0 Desulfobacca acetoxidans 60893 species 1 876 0 20289 0 69541 1 Desulfuromonadales 425 23 order 6206 0 213421 1 Desulfuromonadaceae 178 9 family 4199 0 18 Pelobacter 1 75 5 genus 29543 Pelobacter propionicus 1 species 1627 0 Pelobacter acetylenicus 29542 species 1 1007 0 2620299 no rank 1 637 0 1842532 Pelobacter sp. SFB93 1 species 637 0 0 853 1 species 19 Pelobacter carbinolicus 0 1829 3 genus 890 Desulfuromonas 1 12 1 no rank 2614637 0 997 997 0 Desulfuromonas sp. DDH964 1823759 species 1 820 0 1603606 Desulfuromonas soudanensis 1 species 1 Geobacteraceae 213422 80 family 13 13658 0 1252 0 392332 1 genus species 1 Geoalkalibacter subterraneus 483547 0 1252 1 Geobacter 28231 205 genus 11 12326 0 1203471 Geobacter daltonii 1 species 747 0 1 species 35554 Geobacter sulfurreducens 0 983 1000 0 Geobacter metallireducens 28232 species 1 351604 Geobacter uraniireducens 1 species 852 0 345632 Geobacter pickeringii 1 species 1438 0 0 1380 1 species 313985 Geobacter lovleyi 1340425 Geobacter anodireducens 1 species 1439 0 2 no rank 2627627 0 3133 species 1 Geobacter sp. M21 443144 0 1341 Geobacter sp. M18 443143 species 1 1792 0 1149 0 225194 Geobacter bemidjiensis 1 species 0 2576 order 4 1 Desulfurellales 213113 9 1 Desulfurellaceae 117942 16 family 3 2567 0 33001 genus 1 1649 0 0 1649 1 species 33002 Desulfurella acetivorans 0 902 1 genus 84404 0 902 1 species 84405 Hippea maritima 0 26961 order 25 369 1 Desulfovibrionales 213115 302 0 213117 family 2 3 1 Desulfohalobium 45662 genus 2 302 0 species 1 Desulfohalobium retbaense 45663 0 299 66 213116 1 Desulfomicrobiaceae 4 family 2321 0 7 1 Desulfomicrobium 898 genus 3 2255 0 0 1257 1 species 899 Desulfomicrobium baculatum 991 0 132132 Desulfomicrobium orale 1 species 18 family 194924 1 Desulfovibrionaceae 201 0 23969 genus 1 2582840 0 1286 1 species 873 Desulfovibrio africanus 0 1286 4223 0 16 1 Pseudodesulfovibrio 2035811 genus 4 species 1 Pseudodesulfovibrio indicus 1716143 0 1750 57320 Pseudodesulfovibrio profundus 1 species 1089 0 0 1368 1 species 182210 Pseudodesulfovibrio aespoeensis 2145 0 2794998 1 genus 0 2145 species 1 Desulfovibrio salexigens 880 1483 0 2 1 Lawsonia 41707 genus 2 1 species 29546 Lawsonia intracellularis 0 1481 872 Desulfovibrio 1 134 9 genus 14631 0 1919 0 Desulfovibrio fairfieldensis 44742 species 1 1 species 901 Desulfovibrio piger 0 2287 species 1 Candidatus Desulfovibrio trichonymphae 1725232 0 459 942 0 58180 Desulfovibrio alaskensis 1 species 3615 0 Desulfovibrio vulgaris 881 species 1 0 708 1 no rank 2593640 0 708 species 1 Desulfovibrio sp. G11 631220 0 2256 species 1 Desulfovibrio magneticus 184917 Desulfovibrio desulfuricans 876 species 1 2311 0 0 28699 38 order 420 29 Myxococcales 1 0 1448 3 suborder 224462 0 1448 3 family 224464 Kofleriaceae 1 15 0 1433 genus 2 1 Haliangium 162027 14 0 1419 species 1 Haliangium ochraceum 80816 22575 0 80811 26 suborder 6848 0 Archangiaceae 1 39 116 family 9 0 1806 genus 2 Archangium 1 47 41 1 species 48 Archangium gephyra 0 1765 0 1683 genus 2 1 Stigmatella 40 7 0 1676 1 species 41 Stigmatella aurantiaca 0 1676 2 genus 35 42 1 Cystobacter species 1 Cystobacter fuscus 43 0 1641 1567 0 1 Melittangium 44 13 genus 2 1 species 83453 Melittangium boletus 0 1554 0 11226 family 9 50 1 Myxococcaceae 31 genus 3 70 1 Corallococcus 83461 0 3875 2046 0 184914 Corallococcus coralloides 1 species 0 1759 species 1 Myxococcus macrosporus 35 229 1 Myxococcus 32 genus 5 7301 0 1 species 83455 Myxococcus stipitatus 0 1383 34 Myxococcus xanthus 1 species 1168 0 1187 0 Myxococcus hansupus 1297742 species 1 Myxococcus fulvus 33 species 1 3334 0 0 796 3 family 5 1524213 1 Vulgatibacteraceae 0 791 2 genus 1524214 1 Vulgatibacter 12 1 species 1391653 Vulgatibacter incomptus 0 779 5 family 24 1524215 Anaeromyxobacteraceae 1 0 3705 3681 0 Anaeromyxobacter 1 161492 104 genus 4 2 no rank 2620896 0 1813 0 933 species 1 Anaeromyxobacter sp. Fw109-5 404589 Anaeromyxobacter sp. K 447217 species 1 880 0 0 1764 1 species 161493 Anaeromyxobacter dehalogenans 80812 8 suborder 4256 0 5 family 49 Polyangiaceae 1 12 0 3603 0 2741 2 genus 25 39643 1 Sorangium 2716 0 Sorangium cellulosum 56 species 1 genus 2 1 Chondromyces 50 1 0 850 849 0 52 Chondromyces crocatus 1 species 15 1055686 1 Sandaracinaceae 3 family 653 0 1 Sandaracinus 1055688 11 genus 2 638 0 627 0 Sandaracinus amylolyticus 927083 species 1 0 262553 346 class 490 28216 Betaproteobacteria 1 0 199395 231 order 80840 1 Burkholderiales 2004 10709 0 224471 no rank 17 1 Paucibacter 318147 21 genus 2 981 0 1 no rank 2642959 0 960 960 0 1768242 Paucibacter sp. KCTC 42545 1 species 59 1 Rubrivivax 28067 genus 2 1418 0 0 1359 species 1 Rubrivivax gelatinosus 28068 1 Mitsuaria 65047 59 genus 2 1063 0 2648776 1 no rank 1004 0 1658665 Mitsuaria sp. 7 1 species 1004 0 1483 0 10 1 Thiomonas 32012 genus 2 Thiomonas intermedia 926 species 1 1473 0 genus 2 41 Leptothrix 1 88 0 998 957 0 34029 Leptothrix cholodnii 1 species 1454 0 42 212743 Rhizobacter 1 2 genus 0 1412 1 species 946333 Rhizobacter gummiphilus genus 2 1 Roseateles 93681 24 0 1595 76731 Roseateles depolymerans 1 species 1571 0 14 1 Methylibium 316612 genus 2 944 0 930 0 105560 Methylibium petroleiphilum 1 species 0 773 1 species 413882 [Polyangium] brachysporum 80841 2 no rank 1685 0 1304 0 Burkholderiales bacterium YL45 1834205 species 1 species 1 Burkholderiales bacterium GJ-E10 1469502 0 381 0 24275 family 28 311 Oxalobacteraceae 1 75682 6 genus 78 149698 1 Massilia 0 6123 1 species 2072590 Massilia sp. ZMN-3 0 1507 0 1127 species 1 Massilia putida 1141883 2423 0 2609279 no rank 2 985 0 Massilia sp. WG5 1707785 species 1 1438 0 1678028 Massilia sp. NR 4-1 1 species species 1 Massilia sp. B2 2045208 0 988 0 6909 genus 6 463 Herbaspirillum 1 963 1 species 92645 Herbaspirillum frisingense 0 1750 0 1528 1 species 964 Herbaspirillum seropedicae 1472 0 80842 Herbaspirillum rubrisubalbicans 1 species species 1 Herbaspirillum hiltneri 341045 0 928 2624150 no rank 1 768 0 768 0 2025949 Herbaspirillum sp. meg3 1 species 39 29580 Janthinobacterium 1 7 genus 4840 0 919 0 55508 Janthinobacterium agaricidamnosum 1 species 368607 Janthinobacterium svalbardensis 1 species 1050 0 4 no rank 2610881 0 2832 277 0 Janthinobacterium sp. B9-8 1236179 species 1 863 0 1938606 Janthinobacterium sp. LM6 1 species 1644131 Janthinobacterium sp. 1_2014MBL_MicDiv 1 species 1345 0 Janthinobacterium sp. Marseille 375286 species 1 347 0 848 0 846 1 genus Oxalobacter formigenes 847 species 1 848 0 4 genus 68 202907 1 Collimonas 0 3753 1 species 158899 Collimonas fungivorans 0 1003 1693 0 279058 Collimonas arenae 1 species 279113 Collimonas pratensis 1 species 989 0 1491 0 10 1 Herminiimonas 303379 genus 3 954 0 204773 Herminiimonas arsenicoxydans 1 species 1 species 1809410 Herminiimonas arsenitoxidans 0 527 0 50753 58 family 80864 1 Comamonadaceae 1113 201096 Alicycliphilus 1 101 2 genus 2064 0 Alicycliphilus denitrificans 179636 species 1 1963 0 1012 0 2490452 2 genus species 1 Comamonadaceae bacterium B1 1458426 0 592 species 1 Comamonadaceae bacterium A1 1458425 0 420 1106 0 3 1 Diaphorobacter 238749 genus 2 1103 0 Diaphorobacter polyhydroxybutyrativorans 1546149 species 1 0 3393 genus 5 1 Rhodoferax 28065 49 1048 0 Rhodoferax koreense 1842727 species 1 851 0 81479 Rhodoferax antarcticus 1 species 1 species 192843 Rhodoferax ferrireducens 0 744 1484693 Rhodoferax saidenbachensis 1 species 701 0 80865 Delftia 1 268 5 genus 6647 0 3112 0 2613839 no rank 2 1438 0 Delftia sp. HK171 1920191 species 1 1674 0 742013 Delftia sp. Cs1-4 1 species 1 species 180282 Delftia tsuruhatensis 0 1449 0 1818 species 1 Delftia acidovorans 80866 699 0 1 364316 Verminephrobacter 1 2 genus 0 698 1 species 364317 Verminephrobacter eiseniae genus 2 15 1 Melaminivora 1649468 0 1356 2641902 1 no rank 1341 0 1341 0 2109913 Melaminivora sp. SC2-9 1 species 735 0 1436289 genus 1 0 735 1 species 1436290 Candidatus Symbiobacter mobilis 0 3285 4 genus 47420 Hydrogenophaga 1 14 2354 0 2610897 2 no rank 1396 0 795665 Hydrogenophaga sp. PBC 1 species 1 species 1842537 Hydrogenophaga sp. RAC07 0 958 0 917 species 1 Hydrogenophaga crassostreae 1763535 1 Acidovorax 12916 416 genus 9 9209 0 0 856 1 species 721785 Acidovorax ebreus 4630 0 2684926 4 no rank 1073 0 1842533 Acidovorax sp. RAC01 1 species species 1 Acidovorax sp. KKS102 358220 0 1309 232721 Acidovorax sp. JS42 1 species 1155 0 1093 0 1858609 Acidovorax sp. T1 1 species 1 species 80867 Acidovorax avenae 0 1123 0 1278 1 species 80869 Acidovorax citrulli 1 species 553814 Acidovorax sp. NA3 0 906 0 6140 5 genus 110 34072 1 Variovorax 436515 Variovorax boronicumulans 1 species 1010 0 663243 2 no rank 1922 0 1 species 2126319 Variovorax sp. PMC12 0 1353 0 569 1 species 1795631 Variovorax sp. PAMC 28711 1 species 34073 Variovorax paradoxus 0 3098 0 1159 1 genus 2678886 species 1 Melaminivora sp. SC2-7 2116657 0 1159 Simplicispira 1 352450 4 genus 2 649 0 0 645 species 1 Simplicispira sp. SC1-8 2109915 1240 0 4 1 Limnohabitans 665874 genus 3 2 no rank 2626134 0 1236 species 1 Limnohabitans sp. 63ED37-2 1678128 0 643 593 0 Limnohabitans sp. 103DPR2 1678129 species 1 0 4863 genus 4 29 1 Comamonas 283 1128 0 Comamonas kerstersii 225992 species 1 Comamonas serinivorans 1082851 species 1 1273 0 Comamonas testosteroni 285 species 1 2433 0 11 Polaromonas 1 52972 genus 3 1835 0 216465 Polaromonas naphthalenivorans 1 species 949 0 0 875 1 no rank 2638319 1 species 296591 Polaromonas sp. JS666 0 875 Ottowia 1 219181 17 genus 3 1722 0 2109914 Ottowia sp. KADR8-3 1 species 959 0 2645081 no rank 1 746 0 species 1 Ottowia sp. oral taxon 894 1658672 0 746 2526 0 174951 1 Ramlibacter 44 2 genus Ramlibacter tataouinensis 94132 species 1 2482 0 69263 0 119060 1 Burkholderiaceae 722 84 family 0 5480 10 genus 93217 Pandoraea 1 183 573737 Pandoraea oxalativorans 1 species 751 0 480 0 Pandoraea faecigallinarum 656179 species 1 species 1 Pandoraea sputorum 93222 0 557 481 0 Pandoraea apista 93218 species 1 696 0 Pandoraea norimbergensis 93219 species 1 646 0 Pandoraea thiooxydans 445709 species 1 species 1 Pandoraea vervacti 656178 0 436 0 723 species 1 Pandoraea pnomenusa 93220 93221 Pandoraea pulmonicola 1 species 527 0 8099 0 197 48736 Ralstonia 1 5 genus 1 species 190721 Ralstonia insidiosa 0 1309 Ralstonia solanacearum 305 species 1 3976 0 105219 Ralstonia mannitolilytica 1 species 1045 0 329 Ralstonia pickettii 1 species 1572 0 0 2072 4 genus 44013 1 Polynucleobacter 18 0 567 species 1 Polynucleobacter necessarius 576610 Polynucleobacter asymbioticus 576611 species 1 1103 0 384 0 Polynucleobacter duraquae 1835254 species 1 1827195 genus 1 778 0 Burkholderia sp. RPE64 758793 species 1 778 0 1 genus 2571159 0 330 330 0 412963 Paraburkholderia rhizoxinica 1 species 33606 0 1602 Burkholderia 1 32008 genus 41 7 species group 111527 0 4283 Burkholderia pseudomallei 28450 species 1 1049 0 0 305 species 1 Burkholderia mallei 13373 521 0 Burkholderia sp. MSMB617WGS 1637831 species 1 0 711 species 1 Burkholderia thailandensis 57975 0 531 species 1 Burkholderia oklahomensis 342113 0 601 species 1 Burkholderia sp. MSMB0852 1637841 species 1 Burkholderia sp. MSMB0266 1637837 0 565 337 Burkholderia glumae 1 species 1648 0 41899 Burkholderia plantarii 1 species 965 0 5868 0 2613784 no rank 11 Burkholderia sp. Bp7605 1740163 species 1 445 0 0 312 species 1 Burkholderia sp. PAMC 28687 1795874 species 1 Burkholderia sp. CCGE1003 640512 0 562 1795043 Burkholderia sp. PAMC 26561 1 species 365 0 1 species 1678678 Burkholderia sp. HB1 0 827 698 0 Burkholderia sp. YI23 1097668 species 1 0 622 species 1 Burkholderia sp. KJ006 416344 species 1 Burkholderia sp. Bp5365 1740162 0 349 0 410 species 1 Burkholderia sp. 2002721687 1468409 Burkholderia sp. RPE67 758796 species 1 603 0 675 0 640510 Burkholderia sp. CCGE1001 1 species 87882 19 species group 17389 0 species 1 Burkholderia latens 488446 0 290 60552 Burkholderia vietnamiensis 1 species 893 0 339 0 Burkholderia metallica 488729 species 1 0 2309 1 species 292 Burkholderia cepacia 1 species 265293 [Pseudomonas] mesoacidophila 0 377 species 1 Burkholderia dolosa 152500 0 254 0 602 species 1 Burkholderia stagnalis 1503054 216 0 60550 Burkholderia pyrrocinia 1 species Burkholderia territorii 1503055 species 1 275 0 0 773 species 1 Burkholderia stabilis 95485 1 species 87883 Burkholderia multivorans 0 1807 2548 0 Burkholderia lata 482957 species 1 species 1 Burkholderia seminalis 488731 0 300 1 species 488447 Burkholderia contaminans 0 518 95486 Burkholderia cenocepacia 1 species 2471 0 Burkholderia diffusa 488732 species 1 482 0 species 1 Burkholderia pseudomultivorans 1207504 0 478 species 1 Burkholderia ambifaria 152480 0 959 101571 Burkholderia ubonensis 1 species 1498 0 0 1851 species 1 Burkholderia gladioli 28095 genus 12 Paraburkholderia 1 1822464 139 0 7233 585 0 134537 Paraburkholderia fungorum 1 species 311230 Paraburkholderia terrae 1 species 475 0 1 species 75105 Paraburkholderia caribensis 0 944 0 891 1 species 948107 Paraburkholderia sprentiae 0 674 species 1 Paraburkholderia phenoliruptrix 252970 0 633 1 species 148447 Paraburkholderia phymatum 456 0 Paraburkholderia phytofirmans 261302 species 1 0 385 no rank 1 2615204 385 0 Paraburkholderia sp. SOS3 1926494 species 1 1 species 2026199 Paraburkholderia aromaticivorans 0 857 0 619 species 1 Paraburkholderia hospita 169430 575 0 36873 Paraburkholderia xenovorans 1 species 0 10943 9 genus 106589 Cupriavidus 1 468 1949 0 Cupriavidus necator 106590 species 1 0 905 species 1 Cupriavidus metallidurans 119219 Cupriavidus pinatubonensis 248026 species 1 1213 0 0 1064 species 1 Cupriavidus basilensis 68895 0 1414 species 1 Cupriavidus sp. USMAA1020 367825 2 no rank 2640874 0 2940 1389192 Cupriavidus sp. USMAHM13 1 species 1508 0 1 species 876364 Cupriavidus sp. USMAA2-4 0 1432 82541 Cupriavidus gilardii 1 species 990 0 0 40706 family 41 325 1 Alcaligenaceae 506 437 0 90243 1 Oligella 12 2 genus 90245 Oligella urethralis 1 species 425 0 18 1 Orrella 1921582 genus 2 1238 0 species 1 Orrella dioscoreae 1851544 0 1220 1021 0 41 Castellaniella 1 359336 genus 2 1 species 75697 Castellaniella defragrans 0 980 1472344 1 genus 868 0 868 0 1472345 Basilea psittacipulmonis 1 species 290425 1 Advenella 17 3 genus 1000 0 519 0 Advenella mimigardefordensis 302406 species 1 species 1 Advenella kashmirensis 310575 0 464 16452 0 539 Bordetella 1 517 genus 17 1111 0 1331258 Bordetella pseudohinzii 1 species 0 836 1 species 520 Bordetella pertussis 1 species 463014 Bordetella flabilis 0 750 0 846 1 species 94624 Bordetella petrii 1988 0 518 Bordetella bronchiseptica 1 species 1214 0 1416806 Bordetella genomosp. 8 1 species 0 1005 species 1 Bordetella genomosp. 6 463024 species 1 Bordetella genomosp. 13 463040 0 1114 521 Bordetella avium 1 species 470 0 0 992 no rank 1 2630031 992 0 1697043 Bordetella sp. H567 1 species 1 species 463025 Bordetella bronchialis 0 1084 Bordetella trematum 123899 species 1 1178 0 0 1068 1 species 519 Bordetella parapertussis 0 332 species 1 Bordetella holmesii 35814 Bordetella hinzii 103855 species 1 1087 0 838 0 Bordetella genomosp. 9 1416803 species 1 2 genus 507 1 Alcaligenes 10 0 1685 0 1675 species 1 Alcaligenes faecalis 511 305976 Pusillimonas 1 5 2 genus 813 0 0 808 1 no rank 2640016 808 0 1007105 Pusillimonas sp. T7-7 1 species 1100891 genus 1 862 0 species 1 Paenalcaligenes hominis 643674 0 862 2 genus 29574 0 1871 207 0 84590 Taylorella asinigenitalis 1 species 1664 0 Taylorella equigenitalis 29575 species 1 14134 0 474 1 Achromobacter 222 genus 6 0 2907 species 1 Achromobacter denitrificans 32002 2626865 no rank 1 1491 0 Achromobacter sp. AONIH1 1758194 species 1 1491 0 0 2171 1 species 217203 Achromobacter spanius species 1 Achromobacter insolitus 217204 0 1248 species 1 Achromobacter xylosoxidans 85698 0 5843 no rank 11 119066 0 4953 2 genus 327159 1 Candidatus Accumulibacter 16 0 895 879 0 327160 Candidatus Accumulibacter phosphatis 1 species 3445 0 33055 Kinetoplastibacterium 1 20 6 genus 1286 0 Candidatus Kinetoplastibacterium desouzaii 994692 species 1 544 0 994696 Candidatus Kinetoplastibacterium oncopeltii 1 species 688 0 Candidatus Kinetoplastibacterium galatii 994695 species 1 0 482 1 species 233181 Kinetoplastibacterium blastocrithidii 425 0 Candidatus Kinetoplastibacterium crithidii 33056 species 1 0 70 genus 1 1301080 0 70 species 1 Candidatus Nasuia deltocephalinicola 1160784 531 0 1381133 genus 1 0 531 1 species 669502 Candidatus Profftella armatura 12 0 189384 1 genus species 1 Candidatus Tremblaya princeps 189385 0 12 13745 0 262 1 Rhodocyclales 206389 order 22 70 75787 1 Rhodocyclaceae 6 family 3227 0 1557 0 39 146937 1 Azospira 2 genus 0 1518 species 1 Azospira oryzae 146939 1 no rank 75788 0 1011 0 1011 species 1 Rhodocyclaceae bacterium 1898103 589 0 551759 1 Aromatoleum 13 2 genus Aromatoleum aromaticum 551760 species 1 576 0 9840 0 515 1 Zoogloeaceae 2008794 family 12 2947 0 12960 Azoarcus 1 76 5 genus 1519 0 2629479 2 no rank species 1 Azoarcus sp. CIB 198107 0 746 1 species 748247 Azoarcus sp. KH32C 0 773 1 species 418699 Azoarcus olearius 0 689 1 species 2067960 Azoarcus sp. SY39 0 663 0 6378 genus 6 853 Thauera 1 33057 0 1131 1 species 1134435 Thauera humireducens species 1 Thauera aromatica 59405 0 782 1355 0 Thauera chlorobenzoica 96773 species 1 0 2257 2 no rank 2609274 936 0 85643 Thauera sp. MZ1T 1 species 2005884 Thauera sp. K11 1 species 1321 0 2008795 1 Azonexaceae 3 3 family 416 0 73029 1 Dechloromonas 5 2 genus 413 0 408 0 Dechloromonas aromatica 259537 species 1 33809 2 no rank 838 0 0 645 species 1 Betaproteobacteria bacterium GR16-43 1904640 species 1 beta proteobacterium CB 543913 0 193 0 26587 order 36 1 Neisseriales 206351 372 0 15960 family 22 110 1 Neisseriaceae 481 2 genus 1193515 Snodgrassella 1 13 0 870 857 0 Snodgrassella alvi 1196083 species 1 0 1241 3 genus 9 59 Vitreoscilla 1 629 0 2627922 1 no rank 1 species 96942 Vitreoscilla sp. C1 0 629 0 603 1 species 63 Vitreoscilla filiformis genus 12 Neisseria 1 482 505 0 10009 543 0 Neisseria elongata 495 species 1 1203 0 488 Neisseria mucosa 1 species 1853278 Neisseria sp. 10023 1 species 616 0 1 species 326523 Neisseria zoodegmatis 0 453 0 1055 species 1 Neisseria sicca 490 486 Neisseria lactamica 1 species 991 0 2623750 2 no rank 1605 0 0 593 1 species 1853276 Neisseria sp. 10022 species 1 Neisseria sp. KEM232 655307 0 1012 1 species 487 Neisseria meningitidis 0 2116 species 1 Neisseria gonorrhoeae 485 0 489 433 0 28091 Neisseria weaveri 1 species 1 no rank 421605 0 1790 species 1 Neisseriaceae bacterium DSM 100970 2052837 0 1790 799 0 6 1 Eikenella 538 genus 2 793 0 Eikenella corrodens 539 species 1 1141 0 71 1 genus species 1 Simonsiella muelleri 72 0 1141 10255 0 1499392 1 Chromobacteriaceae 140 13 family 0 1423 genus 2 Laribacter 1 168470 13 1410 0 168471 Laribacter hongkongensis 1 species 1 Pseudogulbenkiania 568394 9 genus 2 1333 0 no rank 1 2642558 0 1324 748280 Pseudogulbenkiania sp. NH8B 1 species 1324 0 1095 0 Aquaspirillum 1 187 16 genus 2 1079 0 2620219 no rank 1 Aquaspirillum sp. LM1 1938604 species 1 1079 0 0 5712 4 no rank 90153 5712 0 535 1 Chromobacterium 66 4 genus species 1 Chromobacterium vaccinii 1108595 0 2211 0 1682 1 species 536 Chromobacterium violaceum 1753 0 2641838 1 no rank 1 species 2059672 Chromobacterium sp. ATCC 53434 0 1753 1 Jeongeupia 885864 3 genus 2 552 0 2619593 no rank 1 549 0 1 species 1906741 Jeongeupia sp. USM3 0 549 43 order 32003 Nitrosomonadales 1 157 0 16545 464 0 16 2008790 1 Thiobacillaceae 3 family genus 2 1 Thiobacillus 919 6 0 448 Thiobacillus denitrificans 36861 species 1 442 0 family 5 22 1 Sterolibacteriaceae 2008793 0 1781 1178 0 50 1054211 1 Sulfuritalea 2 genus 748811 Sulfuritalea hydrogenivorans 1 species 1128 0 2 genus 378210 Methyloversatilis 1 7 0 581 1 no rank 2639971 0 574 1842540 Methyloversatilis sp. RAC08 1 species 574 0 4 family 2772226 0 746 Sulfuriferula 1 1778653 13 genus 2 287 0 1 no rank 2637784 0 274 0 274 species 1 Sulfuriferula sp. AH1 1985873 genus 2 22 1 Sulfuricella 935200 0 459 649841 Sulfuricella denitrificans 1 species 437 0 family 13 Methylophilaceae 1 32011 30 0 7856 427 0 Methylobacillus 1 404 1 genus 2 1 species 405 Methylobacillus flagellatus 0 426 0 250 1 genus 16 1 no rank 2630143 0 250 Methylophilus sp. TWE2 1662285 species 1 250 0 genus 3 Methylovorus 1 81682 31 0 4572 2634027 no rank 1 3289 0 887061 Methylovorus sp. MP688 1 species 3289 0 1 species 266009 Methylovorus glucosotrophus 0 1252 992 0 2 1 Methylotenera 359407 genus 3 species 1 Methylotenera mobilis 359408 0 312 species 1 Methylotenera versatilis 1055487 0 678 genus 3 1 Candidatus Methylopumilus 1679002 2 0 1585 0 1306 1 species 1581557 Candidatus Methylopumilus planktonicus 277 0 1581680 Candidatus Methylopumilus turicensis 1 species 4152 0 29 206379 1 Nitrosomonadaceae 12 family genus 4 11 1 Nitrosospira 35798 0 1164 0 413 species 1 Nitrosospira lacus 1288494 170 0 Nitrosospira multiformis 1231 species 1 0 570 species 1 Nitrosospira briensis 35799 0 2959 genus 7 4 Nitrosomonas 1 914 0 529 1 species 44577 Nitrosomonas ureae Nitrosomonas communis 44574 species 1 501 0 0 703 species 1 Nitrosomonas eutropha 916 519 0 Nitrosomonas europaea 915 species 1 703 0 2609265 no rank 2 438 0 Nitrosomonas sp. AL212 153948 species 1 0 265 1 species 261292 Nitrosomonas sp. Is79A3 5 family 36 90627 1 Gallionellaceae 0 1389 1 Sideroxydans 314343 13 genus 2 552 0 species 1 Sideroxydans lithotrophicus 63745 0 539 genus 2 2 1 Gallionella 96 0 801 799 0 Gallionella capsiferriformans 370405 species 1 0 1512520 873 class 1381 1236 1 Gammaproteobacteria 33569 0 240 Oceanospirillales 1 135619 order 65 2897 0 1920240 1 Kangiellaceae 5 6 family 5 genus 261963 Kangiella 1 20 0 2892 species 1 Kangiella koreensis 261964 0 163 Kangiella sediminilitoris 1144748 species 1 1800 0 686 0 Kangiella profundi 1561924 species 1 0 223 1 species 914150 Kangiella geojedonensis 224379 family 1 789 0 158481 1 genus 789 0 1 species 158327 Hahella chejuensis 0 789 8 family 224372 1 Alcanivoracaceae 27 0 4235 0 3494 genus 6 28 1 Alcanivorax 59753 1 species 59754 Alcanivorax borkumensis 0 541 1306787 Alcanivorax pacificus 1 species 919 0 species 1 Alcanivorax dieselolei 285091 0 759 0 620 1 no rank 2638842 620 0 Alcanivorax sp. NBRC 101098 1113728 species 1 Alcanivorax xenomutans 1094342 species 1 627 0 2025617 1 genus 714 0 1 species 1917421 Ketobacter alkanivorans 0 714 0 1514 5 family 255527 1 Saccharospirillaceae 1 230494 Reinekea 1 2 2 genus 454 0 species 1 Reinekea forsetii 1336806 0 452 0 1059 2 genus 3 1445504 1 Gynuella 1056 0 1445505 Gynuella sunshinyii 1 species 0 15510 family 30 193 1 Halomonadaceae 28256 genus 2 1 Salinicola 404432 50 0 741 1 species 1771309 Salinicola tamaricis 0 691 genus 3 10 Kushneria 1 504090 0 1929 0 1004 1 species 698828 Kushneria konosiri 915 0 157779 Kushneria marisflavi 1 species 15 genus 2745 1 Halomonas 163 0 9848 0 321 1 species 213554 Halomonas campaniensis 2609666 no rank 8 4824 0 1610576 Halomonas sp. R57-5 1 species 456 0 0 378 1 species 1118153 Halomonas sp. GFAJ-1 590 0 1949203 Halomonas sp. 'Soap Lake #6' 1 species 1 species 1971364 Halomonas sp. GT 0 293 1 species 2136172 Halomonas sp. SF2003 0 913 1046 0 Halomonas sp. 1513 1883416 species 1 0 558 species 1 Halomonas sp. KO116 1504981 Halomonas sp. 'Soap Lake #7' 1962264 species 1 590 0 0 715 1 species 507626 Halomonas chromatireducens 1106 0 475662 Halomonas beimenensis 1 species 1216 0 1897729 Halomonas aestuarii 1 species 590 0 1178482 Halomonas huangheensis 1 species species 1 Halomonas hydrothermalis 115561 0 913 105 376488 Halotalea 1 2 genus 673 0 376489 Halotalea alkalilenta 1 species 568 0 114403 3 no rank 597 0 1495768 genus 1 283 0 0 283 species 1 Candidatus Evansia muelleri 1495769 235572 genus 1 70 0 0 70 1 species 91844 Candidatus Portiera aleyrodidarum genus 1 114185 0 244 244 0 Candidatus Carsonella ruddii 114186 species 1 genus 2 10 1 Chromohalobacter 42054 0 552 542 0 158080 Chromohalobacter salexigens 1 species 2 genus 204286 1 Cobetia 1 0 977 Cobetia marina 28258 species 1 976 0 12 family 129 135620 1 Oceanospirillaceae 0 7975 1 Bacterioplanes 1537406 3 genus 2 364 0 Bacterioplanes sanyensis 1249553 species 1 361 0 2 genus 48075 Marinobacterium 1 4 0 1870 1821621 Marinobacterium aestuarii 1 species 1866 0 3540 0 1 Marinomonas 28253 1 genus 4 1 species 119864 Marinomonas mediterranea 0 724 0 1122 species 1 Marinomonas posidonica 936476 1693 0 196814 1 no rank 400668 Marinomonas sp. MWYL1 1 species 1693 0 1 genus 188907 0 1004 1004 0 Oleispira antarctica 188908 species 1 1068 0 187492 Thalassolituus 1 1 2 genus 1067 0 187493 Thalassolituus oleivorans 1 species 2 family 1 191033 1 Oleiphilaceae 0 409 1 genus 141450 0 408 408 0 141451 Oleiphilus messinensis 1 species 135614 Xanthomonadales 1 531 52 order 45215 0 14 family 76 1775411 1 Rhodanobacteraceae 0 8008 0 683 genus 2 2 1 Frateuria 70411 0 681 1 species 81475 Frateuria aurantia 3324 0 44 231454 Dyella 1 4 genus species 1 Dyella jiangningensis 1379159 0 915 1334 0 Dyella japonica 231455 species 1 1031 0 445710 Dyella thiooxydans 1 species 1 Luteibacter 242605 2 genus 2 1023 0 species 1 Luteibacter rhizovicinus 242606 0 1021 2233801 genus 1 362 0 362 0 2021234 Xanthomonadales bacterium D13 1 species 1292 0 7 1 Rhodanobacter 75309 genus 2 1 species 666685 Rhodanobacter denitrificans 0 1285 genus 2 14 1 Dokdonella 323413 0 1248 0 1234 species 1 Dokdonella koreensis 323415 292 32033 Xanthomonadaceae 1 37 family 36676 0 0 15566 genus 17 1065 Xanthomonas 1 338 0 580 species 1 Xanthomonas albilineans 29447 species 1 Xanthomonas phaseoli 1985254 0 616 0 1872 1 species 339 Xanthomonas campestris 897 0 56460 Xanthomonas vesicatoria 1 species 347 Xanthomonas oryzae 1 species 1112 0 0 685 1 species 366650 Xanthomonas alfalfae 1 species 442694 Xanthomonas perforans 0 898 1 species 56458 Xanthomonas sacchari 0 1096 0 424 species 1 Xanthomonas axonopodis 53413 838 0 56454 Xanthomonas hortorum 1 species 0 315 1 species 56459 Xanthomonas vasicola 1 species 456327 Xanthomonas euvesicatoria 0 664 species 1 Xanthomonas fragariae 48664 0 417 2 species group 643453 0 2458 1 species 366648 Xanthomonas fuscans 0 569 346 Xanthomonas citri 1 species 1889 0 species 1 Xanthomonas translucens 343 0 1629 0 927 1 genus 2370 0 927 species 1 Xylella fastidiosa 2371 0 2470 3 genus 34 83618 1 Pseudoxanthomonas 1 species 314722 Pseudoxanthomonas suwonensis 0 1558 415229 Pseudoxanthomonas spadix 1 species 878 0 5 genus 62 68 Lysobacter 1 0 3973 0 789 1 species 69 Lysobacter enzymogenes 788 0 Lysobacter gummosus 262324 species 1 species 1 Lysobacter antibioticus 84531 0 1015 1319 0 Lysobacter capsici 435897 species 1 0 12909 genus 9 1 Stenotrophomonas 40323 261 1655 0 128780 Stenotrophomonas acidaminiphila 1 species 1 species group 995085 0 5777 1 species 40324 Stenotrophomonas maltophilia 0 5777 1028 0 Stenotrophomonas rhizophila 216778 species 1 589 0 Stenotrophomonas nitritireducens 83617 species 1 196198 no rank 4 3599 0 1 species 1793721 Stenotrophomonas sp. KCTC 12332 0 617 species 1 Stenotrophomonas sp. MYb57 1827305 0 1043 1904944 Stenotrophomonas sp. LM091 1 species 973 0 966 0 2005046 Stenotrophomonas sp. WZN-1 1 species 1 genus 83614 0 539 species 1 Luteimonas sp. 100111 2006110 0 539 order 102 273 1 Alteromonadales 135622 0 98115 6 1 Ferrimonadaceae 267892 family 3 1041 0 1035 0 1 Ferrimonas 44011 51 genus 2 984 0 Ferrimonas balearica 44012 species 1 31669 0 267888 1 Pseudoalteromonadaceae 23 25 family 297 Pseudoalteromonas 1 53246 genus 24 31646 0 1 species 228 Pseudoalteromonas haloplanktis 0 1280 species 1 Pseudoalteromonas piscicida 43662 0 2216 0 1597 species 1 Pseudoalteromonas atlantica 288 761 0 Pseudoalteromonas rubra 43658 species 1 28109 Pseudoalteromonas nigrifaciens 1 species 1313 0 0 843 1 species 166935 Pseudoalteromonas translucida 1 species 28107 Pseudoalteromonas espejiana 0 846 1 species 267375 Pseudoalteromonas marina 0 483 0 1561 1 species 247523 Pseudoalteromonas aliena 0 6461 no rank 5 194690 851 0 1514074 Pseudoalteromonas sp. NC201 1 species species 1 Pseudoalteromonas sp. 13-15 1761891 0 325 1617 0 1720343 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 species 1674 0 Pseudoalteromonas sp. SM9913 234831 species 1 0 1994 1 species 283699 Pseudoalteromonas sp. Bsw20308 Pseudoalteromonas tunicata 314281 species 1 1728 0 species 1 Pseudoalteromonas tetraodonis 43659 0 1877 species 1 Pseudoalteromonas arctica 394751 0 1300 0 1388 species 1 Pseudoalteromonas luteoviolacea 43657 152297 Pseudoalteromonas issachenkonii 1 species 2027 0 0 623 1 species 176102 Pseudoalteromonas agarivorans 0 965 1 species 161398 Pseudoalteromonas phenolica Pseudoalteromonas spongiae 298657 species 1 2658 0 Pseudoalteromonas piratica 1348114 species 1 1422 0 618 1 Shewanellaceae 267890 family 25 22869 0 0 22251 24 genus 1155 22 Shewanella 1 1 species 260364 Shewanella marisflavi 0 771 Shewanella denitrificans 192073 species 1 879 0 Shewanella oneidensis 70863 species 1 1501 0 984 0 Shewanella psychrophila 225848 species 1 646 0 Shewanella violacea 60217 species 1 Shewanella piezotolerans 404011 species 1 986 0 529 0 60961 Shewanella woodyi 1 species species 1 Shewanella loihica 359303 0 1279 0 1066 1 species 56812 Shewanella frigidimarina 0 464 1 species 2018305 Shewanella bicestrii species 1 Shewanella halifaxensis 271098 0 1291 196818 no rank 6 4359 0 Shewanella sp. Pdp11 2059264 species 1 1251 0 0 702 species 1 Shewanella sp. W3-18-1 351745 0 611 1 species 2029986 Shewanella sp. WE21 94122 Shewanella sp. ANA-3 1 species 487 0 species 1 Shewanella sp. MR-7 60481 0 438 0 870 1 species 60480 Shewanella sp. MR-4 2425 0 62322 Shewanella baltica 1 species 1073 0 70864 Shewanella pealeana 1 species 93973 Shewanella japonica 1 species 825 0 species 1 Shewanella amazonensis 60478 0 706 596 0 24 Shewanella putrefaciens 1 species Shewanella sediminis 271097 species 1 716 0 4090 0 2 267894 1 Psychromonadaceae 4 family 0 4088 genus 3 89 Psychromonas 1 67572 2036 0 2614957 1 no rank 1 species 314282 Psychromonas sp. CNPT3 0 2036 1963 0 Psychromonas ingrahamii 357794 species 1 family 8 6 1 Colwelliaceae 267889 0 12908 15 28228 Colwellia 1 6 genus 11347 0 1312 0 Colwellia psychrerythraea 28229 species 1 0 3231 1 species 1967665 Colwellia beringensis 196834 no rank 3 6789 0 58049 Colwellia sp. MT41 1 species 3288 0 2968 0 Colwellia sp. PAMC 20917 1816218 species 1 0 533 species 1 Colwellia sp. PAMC 21821 1816219 genus 1 1518149 0 1555 1763536 Thalassotalea crassostreae 1 species 1555 0 2027 0 1 Moritellaceae 267891 2 family 3 2025 0 58050 Moritella 1 3 2 genus species 1 Moritella viscosa 80854 0 2022 77 72275 Alteromonadaceae 1 27 family 21250 0 0 538 1 genus 261825 538 0 680279 Agarivorans gilvus 1 species 10596 0 1 Alteromonas 226 124 genus 10 0 1784 1 species 233316 Alteromonas stellipolaris species 1 Alteromonas mediterranea 314275 0 1809 0 1112 1 species 287094 Alteromonas addita 2614992 no rank 3 2137 0 species 1 Alteromonas sp. Mac1 1777491 0 1283 216 0 Alteromonas sp. MB-3u-76 2058133 species 1 0 638 species 1 Alteromonas sp. RW2A1 1917158 845 0 715451 Alteromonas naphthalenivorans 1 species 0 656 species 1 Alteromonas australica 589873 Alteromonas macleodii 28108 species 1 2129 0 0 7583 genus 10 37 1 Marinobacter 2742 1 species 2743 Marinobacter hydrocarbonoclasticus 0 1641 0 639 1 species 330734 Marinobacter psychrophilus 1 species 1420917 Marinobacter salarius 0 1103 0 786 1 species 1874317 Marinobacter salinus 83889 no rank 3 2013 0 0 494 species 1 Marinobacter sp. CP1 1671721 species 1 Marinobacter sp. LQ44 1749259 0 702 species 1 Marinobacter sp. BSs20148 490759 0 817 0 643 species 1 Marinobacter adhaerens 1033846 0 721 1 species 1420916 Marinobacter similis genus 2 1 Lacimicrobium 1751872 5 0 895 0 890 1 species 1526571 Lacimicrobium alkaliphilum 1621534 1 genus 325 0 1 species 326544 Paraglaciecola psychrophila 0 325 genus 2 89404 0 1236 878 0 Glaciecola nitratireducens 300231 species 1 358 0 2618684 1 no rank 0 358 species 1 Glaciecola sp. 4H-3-7+YE-5 983545 family 6 1 Idiomarinaceae 267893 3 0 1988 1985 0 Idiomarina 1 135575 13 genus 5 2614829 2 no rank 745 0 2055892 Idiomarina sp. X4 1 species 261 0 484 0 2100422 Idiomarina sp. OT37-5b 1 species 893 0 Idiomarina loihiensis 135577 species 1 0 334 species 1 Idiomarina piscisalsi 1096243 0 861588 order 248 1 Enterobacterales 91347 1696 25233 0 55 1 Morganellaceae 1903414 family 22 genus 3 1 Proteus 583 30 0 6995 4653 0 Proteus mirabilis 584 species 1 0 2312 species 1 Proteus vulgaris 585 19 1 Xenorhabdus 626 genus 6 4804 0 781 0 351679 Xenorhabdus hominickii 1 species 0 1074 species 1 Xenorhabdus bovienii 40576 628 Xenorhabdus nematophila 1 species 1440 0 993 0 Xenorhabdus poinarii 40577 species 1 0 497 species 1 Xenorhabdus doucetiae 351671 0 230 2 genus 637 Arsenophonus 1 18 634113 Arsenophonus symbiont of Lipoptena fortisetosa 1 species 212 0 6 Providencia 1 586 genus 4 6874 0 991 0 126385 Providencia alcalifaciens 1 species species 1 Providencia stuartii 588 0 2959 Providencia rettgeri 587 species 1 2918 0 Photorhabdus 1 29487 46 genus 4 4627 0 1402 0 Photorhabdus temperata 574560 species 1 0 2388 1 species 291112 Photorhabdus asymbiotica 29488 Photorhabdus luminescens 1 species 791 0 2 genus 34 581 Morganella 1 0 1648 0 1614 1 species 582 Morganella morganii 0 1198 2 family 1903416 1198 0 2 Pragia 1 82984 genus 2 82985 Pragia fontium 1 species 1196 0 0 31505 28 family 1903409 Erwiniaceae 1 88 12903 0 883 1 Pantoea 53335 genus 11 1654067 1 species group 1642 0 0 1642 1 species 549 Pantoea agglomerans 666 0 Pantoea stewartii 66269 species 1 1 species 1891675 Pantoea alhagi 0 695 species 1 Pantoea rwandensis 1076550 0 733 1 species 553 Pantoea ananatis 0 2004 1587 0 1235990 Candidatus Pantoea carbekii 1 species 1 species 470934 Pantoea vagans 0 2418 2275 0 2630326 3 no rank 0 675 species 1 Pantoea sp. PSNIH1 1484158 1032 0 1484157 Pantoea sp. PSNIH2 1 species 592316 Pantoea sp. At-9b 1 species 568 0 0 9024 genus 2 1 Buchnera 32199 1 9023 0 9 Buchnera aphidicola 1 species genus 2 1 Wigglesworthia 51228 1 0 800 51229 Wigglesworthia glossinidia 1 species 799 0 6020 0 133 551 Erwinia 1 8 genus Candidatus Erwinia sp. ErCipseudotaxifoliae 1922217 species 1 1015 0 Erwinia billingiae 182337 species 1 1255 0 species 1 Erwinia amylovora 552 0 763 species 1 Erwinia pyrifoliae 79967 0 679 338565 Erwinia tasmaniensis 1 species 631 0 Erwinia gerundensis 1619313 species 1 802 0 0 742 no rank 1 2622719 species 1 Erwinia sp. Ejp617 215689 0 742 2100764 2 genus 1860 0 0 734 species 1 Pantoea calida 665913 665914 Pantoea gaviniae 1 species 1126 0 0 810 genus 2 1 Tatumella 82986 59 Tatumella citrea 53336 species 1 751 0 0 1671 2 no rank 451511 0 1671 2 genus 702 Plesiomonas 1 15 1656 0 Plesiomonas shigelloides 703 species 1 26 Hafniaceae 1 1903412 family 14 12875 0 0 3535 3 genus 568 Hafnia 1 21 0 2413 species 1 Hafnia alvei 569 1 no rank 2621980 0 1101 1848580 Hafnia sp. CBA7124 1 species 1101 0 1 Obesumbacterium 82982 699 genus 2 1703 0 1 species 82983 Obesumbacterium proteus 0 1004 8 genus 461 635 Edwardsiella 1 0 7611 0 1125 1 species 1263550 Edwardsiella piscicida 0 597 1 species 67780 Edwardsiella ictaluri 2 no rank 2676541 0 1874 Edwardsiella sp. EA181011 1578828 species 1 1046 0 0 828 species 1 Edwardsiella sp. LADL05-105 1650654 0 831 1 species 1821960 Edwardsiella anguillarum 1 species 636 Edwardsiella tarda 0 1970 Edwardsiella hoshinae 93378 species 1 753 0 1903411 Yersiniaceae 1 130 39 family 50300 0 2 genus 2 929812 Gibbsiella 1 0 1628 0 1626 1 species 929813 Gibbsiella quercinecans 923 0 1 Chania 1745211 4 genus 2 1639108 Chania multitudinisentens 1 species 919 0 2443 613 1 Serratia 16 genus 28532 0 0 8904 species 1 Serratia marcescens 615 0 975 1 species 614 Serratia liquefaciens 1879 0 47917 Serratia fonticola 1 species species 1 Serratia ficaria 61651 0 1324 1198 0 61652 Serratia rubidaea 1 species 82996 Serratia plymuthica 1 species 2213 0 0 8719 no rank 8 2647522 0 1073 1 species 671990 Serratia sp. FGI94 488142 Serratia sp. SCBI 1 species 1321 0 0 1401 species 1 Serratia sp. FS14 1327989 768490 Serratia sp. AS12 1 species 843 0 2033438 Serratia sp. MYb239 1 species 1392 0 1 species 768493 Serratia sp. AS13 0 842 Serratia sp. ATCC 39006 104623 species 1 714 0 1133 0 Serratia sp. SSNIH1 1758196 species 1 28151 Serratia proteamaculans 1 species 877 0 42 Rahnella 1 34037 genus 4 2924 0 1889 0 2635087 2 no rank 712 0 741091 Rahnella sp. Y9602 1 species 1805933 Rouxiella sp. ERMR1:05 1 species 1177 0 species 1 Rahnella aquatilis 34038 0 993 13 genus 629 Yersinia 1 266 0 16120 0 3942 1 species 630 Yersinia enterocolitica 920 0 29483 Yersinia aldovae 1 species 619 0 29485 Yersinia rohdei 1 species 1649845 3 species group 2117 0 0 615 1 species 632 Yersinia pestis 0 702 1 species 367190 Yersinia similis 800 0 Yersinia pseudotuberculosis 633 species 1 608 0 2653513 1 no rank 1 species 1839800 Yersinia sp. FDAARGOS_228 0 608 species 1 Yersinia frederiksenii 29484 0 3942 0 655 1 species 263819 Yersinia aleksiciae 718 0 631 Yersinia intermedia 1 species 29486 Yersinia ruckeri 1 species 1096 0 0 1237 species 1 Yersinia kristensenii 28152 1 genus 1565532 Rouxiella 0 43 18784 0 1 Pectobacteriaceae 1903410 41 family 20 0 8002 6 genus 204037 Dickeya 1 376 Dickeya dianthicola 204039 species 1 846 0 1193 0 Dickeya fangzhongdai 1778540 species 1 Dickeya solani 1089444 species 1 1898 0 species 1 Dickeya zeae 204042 0 2584 1 species 204038 Dickeya dadantii 0 1105 71655 1 Brenneria 7 2 genus 923 0 916 0 Brenneria goodwinii 1109412 species 1 1641 0 84565 1 Sodalis 72 5 genus 0 559 1 species 1239307 Sodalis praecaptivus 0 355 1 species 63612 Sodalis glossinidius 1 species 1486991 Candidatus Sodalis pierantonius 0 396 259 0 Sodalis endosymbiont of Henestaris halophilus 1929246 species 1 0 8177 genus 6 1 Pectobacterium 122277 196 1117 0 29471 Pectobacterium atrosepticum 1 species 0 716 1 species 55208 Pectobacterium wasabiae 1688 0 Pectobacterium polaris 2042057 species 1 Pectobacterium carotovorum 554 species 1 3547 0 0 913 species 1 Pectobacterium parmentieri 1905730 543 Enterobacteriaceae 1 5016 120 family 718326 0 191675 no rank 20 8033 0 8033 0 84563 20 clade 682 0 199891 clade 1 species 1 secondary endosymbiont of Trabutina mannipara 1835721 0 682 1645 0 146507 4 clade 1 species 1199245 secondary endosymbiont of Ctenarytaina eucalypti 0 378 1 species 134287 secondary endosymbiont of Heteropsylla cubana 0 252 1015 0 1 568987 Candidatus Hamiltonella 1 2 genus 1 species 138072 Candidatus Hamiltonella defensa 0 1014 genus 2 2 1 Candidatus Tachikawaea 1682492 0 1256 species 1 Candidatus Tachikawaea gelatinosa 1410383 0 1254 656 0 1906660 1 genus 656 0 Candidatus Mikella endobia 1778264 species 1 genus 2 1 1 Candidatus Doolittlea 1906657 0 398 1778262 Candidatus Doolittlea endobia 1 species 397 0 genus 1 1906661 0 869 species 1 Candidatus Gullanella endobia 1070130 0 869 1906659 Candidatus Hoaglandella 1 1 2 genus 113 0 species 1 Candidatus Hoaglandella endobia 1778263 0 112 2414 0 84564 clade 7 2414 0 203804 1 Candidatus Blochmannia 5 7 genus 1 species 203907 Candidatus Blochmannia floridanus 0 414 711328 2 no rank 1170 0 1 species 1505597 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 837 species 1 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 0 333 177 0 101534 Candidatus Blochmannia pennsylvanicus 1 species 251535 Candidatus Blochmannia vafer 1 species 430 0 218 0 Candidatus Blochmannia chromaiodes 251542 species 1 24 1 Salmonella 590 genus 3 11725 0 1 species 54736 Salmonella bongori 0 1150 0 10551 1 species 28901 Salmonella enterica 0 41445 22 genus 2529 547 Enterobacter 1 0 32840 12 species group 354276 species 1 Enterobacter kobei 208224 0 1369 0 9922 1 species 550 Enterobacter cloacae 1 species 69218 Enterobacter cancerogenus 0 650 1 species 299767 Enterobacter ludwigii 0 577 4600 0 158836 Enterobacter hormaechei 1 3201 3 species Enterobacter cloacae complex 'Hoffmann cluster III' 1812934 subspecies 1 816 0 0 583 1 subspecies 1296536 Enterobacter xiangfangensis 13270 0 2757714 3 no rank 2077137 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 species 12036 0 1915310 Enterobacter cloacae complex sp. ECNIH7 1 species 610 0 2027919 Enterobacter cloacae complex bacterium 1 species 624 0 0 2016 1 species 61645 Enterobacter asburiae 0 436 species 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 1812935 2608935 9 no rank 6076 0 0 685 species 1 Enterobacter sp. FY-07 1692238 species 1 Enterobacter sp. HK169 1868135 0 328 667 0 Enterobacter sp. Crenshaw 1977566 species 1 690 0 399742 Enterobacter sp. 638 1 species Enterobacter sp. E20 1560339 species 1 556 0 1166130 Enterobacter sp. R4-368 1 species 770 0 species 1 Enterobacter sp. SA187 1914861 0 822 species 1 Enterobacter sp. ODB01 1827481 0 795 763 0 2051905 Enterobacter sp. CRENT-193 1 species 2 genus 1 1335483 1 Shimwellia 0 1222 1221 0 Shimwellia blattae 563 species 1 1192 0 579 1 genus 61648 Kluyvera intermedia 1 species 1192 0 3630 0 69 1 Pluralibacter 1330546 genus 3 61647 Pluralibacter gergoviae 1 species 2120 0 1334193 [Enterobacter] lignolyticus 1 species 1441 0 1330545 1 Lelliottia 25 4 genus 3553 0 738 0 Lelliottia nimipressuralis 69220 species 1 species 1 Lelliottia jeotgali 1907578 0 1079 61646 Lelliottia amnigena 1 species 1711 0 Kosakonia 1 1330547 43 genus 5 4301 0 1063 0 283686 Kosakonia radicincitans 1 species 0 702 1 species 1158459 Kosakonia sacchari Kosakonia oryzae 497725 species 1 911 0 208223 Kosakonia cowanii 1 species 1582 0 2937 0 158483 1 Cedecea 10 2 genus 1 species 158822 Cedecea neteri 0 2927 36866 5 no rank 4986 0 676 0 Plautia stali symbiont 891974 species 1 Enterobacteriaceae bacterium ENNIH1 2066051 species 1 982 0 Enterobacteriaceae bacterium ENNIH3 1920128 species 1 1074 0 species 1 Enterobacteriaceae bacterium ENNIH2 1920109 0 999 1255 0 693444 Enterobacteriaceae bacterium strain FGI 57 1 species 561 Escherichia 1 475 5 genus 52120 0 471 0 Escherichia marmotae 1499973 species 1 0 3665 species 1 Escherichia albertii 208962 0 46547 species 1 Escherichia coli 562 Escherichia fergusonii 564 species 1 962 0 genus 1 1048757 0 74 Candidatus Moranella endobia 1048758 species 1 74 0 4 genus 397 83654 Leclercia 1 0 5207 0 673 species 1 Leclercia adecarboxylata 83655 4137 0 2627398 2 no rank 1920116 Leclercia sp. LSNIH3 1 species 1012 0 3125 0 Leclercia sp. LSNIH1 1920114 species 1 14 genus 1331 544 1 Citrobacter 0 58733 4027 0 Citrobacter amalonaticus 35703 species 1 1114 0 Citrobacter rodentium 67825 species 1 0 13551 species group 7 1344959 1359 0 Citrobacter braakii 57706 species 1 Citrobacter werkmanii 67827 species 1 1784 0 0 928 1 species 2077147 Citrobacter freundii complex sp. CFNIH3 0 1289 species 1 Citrobacter freundii complex sp. CFNIH4 2077148 1 species 2066049 Citrobacter freundii complex sp. CFNIH2 0 937 5917 0 Citrobacter freundii 546 species 1 1337 0 Citrobacter freundii complex sp. CFNIH9 2077149 species 1 0 3014 no rank 2 2644389 1 species 1702170 Citrobacter sp. FDAARGOS_156 0 768 0 2246 species 1 Citrobacter sp. CFNIH10 1920110 0 1285 1 species 67824 Citrobacter farmeri 34411 0 545 Citrobacter koseri 1 species 491101 0 7397 570 Klebsiella 1 10 genus Klebsiella quasipneumoniae 1463165 species 1 19954 0 0 19703 species 1 Klebsiella oxytoca 571 0 11248 1 species 1134687 Klebsiella michiganensis Klebsiella quasivariicola 2026240 species 1 17325 0 292411 0 Klebsiella pneumoniae 573 species 1 species 1 Klebsiella variicola 244366 0 75633 2608929 2 no rank 10343 0 1667 0 1934254 Klebsiella sp. M5al 1 species 0 8676 species 1 Klebsiella sp. LTGPAF-6F 1905288 1 species 548 Klebsiella aerogenes 0 37087 401618 genus 1 174 0 Candidatus Riesia pediculicola 401619 species 1 174 0 0 395 genus 2 1 1 Candidatus Ishikawaella 409304 394 0 Candidatus Ishikawaella capsulata 168169 species 1 160674 1 Raoultella 114 3 genus 10615 0 9159 0 54291 Raoultella ornithinolytica 1 species 0 1342 species 1 Raoultella planticola 575 1925 0 620 Shigella 1 344 4 genus 622 Shigella dysenteriae 1 species 625 0 no rank 1 2629414 0 485 1 species 1813821 Shigella sp. PAMC 28760 0 485 623 Shigella flexneri 1 species 471 0 0 9942 8 genus 242 413496 1 Cronobacter species 1 Cronobacter condimenti 1163710 0 753 0 1713 species 1 Cronobacter sakazakii 28141 Cronobacter malonaticus 413503 species 1 645 0 778 0 Cronobacter dublinensis 413497 species 1 856 0 413501 Cronobacter muytjensii 1 species species 1 Cronobacter turicensis 413502 0 737 4218 0 Cronobacter universalis 535744 species 1 0 4646 5 order 1240482 4646 0 1 Orbaceae 1240483 19 family 5 1876 0 1 Frischella 1 1335631 genus 2 Frischella perrara 1267021 species 1 1875 0 1 Gilliamella 1193503 2 genus 2 2751 0 2749 0 Gilliamella apicola 1196095 species 1 33811 2 no rank 1388 0 0 755 1 species 83406 gamma proteobacterium HdN1 0 633 1 species 1248727 endosymbiont of unidentified scaly snail isolate Monju 16602 0 1 Legionellales 118969 6 order 19 1527 0 14 118968 1 Coxiellaceae 4 family 134284 no rank 1 307 0 species 1 Coxiella-like endosymbiont 1592897 0 307 1206 0 776 2 genus 0 483 no rank 1 2676648 Coxiella endosymbiont of Amblyomma americanum 325775 species 1 483 0 species 1 Coxiella burnetii 777 0 723 0 15069 14 family 30 444 Legionellaceae 1 13672 0 445 Legionella 1 23 12 genus species 1 Legionella clemsonensis 1867846 0 1345 1014 0 66969 Legionella waltersii 1 species 1623 0 Legionella lansingensis 45067 species 1 0 1155 1 species 28087 Legionella sainthelensi 0 4009 1 species 446 Legionella pneumophila 0 932 1 species 449 Legionella hackeliae 555 0 Legionella oakridgensis 29423 species 1 1 species 450 Legionella longbeachae 0 788 307 0 Legionella spiritensis 452 species 1 1 species 2005262 Legionella endosymbiont of Polyplax serrata 0 433 1 species 96230 Legionella fallonii 0 1488 genus 1 465 0 1367 1 species 451 Tatlockia micdadei 0 1367 109723 0 2 135625 1 Pasteurellales 29 order 28 family 257 712 Pasteurellaceae 1 0 109721 2 genus 2094023 1 Glaesserella 2 0 3940 0 3938 1 species 738 Glaesserella parasuis 724 Haemophilus 1 47 6 genus 70737 0 10984 0 727 Haemophilus influenzae 1 species 0 4109 1 species 249188 Haemophilus pittmaniae 0 1885 species 1 [Haemophilus] ducreyi 730 2609962 no rank 1 2825 0 0 2825 species 1 Haemophilus sp. oral taxon 036 712310 Haemophilus parainfluenzae 729 species 1 50887 0 0 7099 genus 4 Mannheimia 1 75984 270 3715 0 Mannheimia varigena 85404 species 1 1415 0 Mannheimia haemolytica 75985 species 1 0 1699 no rank 1 2645054 species 1 Mannheimia sp. USDA-ARS-USMARC-1261 1432056 0 1699 0 1830 1 genus 476528 species 1 Bibersteinia trehalosi 47735 0 1830 2342 0 697331 1 genus 1 species 157673 [Mannheimia] succiniciproducens 0 2342 0 9035 genus 3 1 Aggregatibacter 416916 158 5738 0 Aggregatibacter aphrophilus 732 species 1 0 3139 species 1 Aggregatibacter actinomycetemcomitans 714 1 genus 155493 0 2370 1 species 750 Gallibacterium anatis 0 2370 1 genus 214906 0 3018 species 1 Histophilus somni 731 0 3018 0 5495 genus 3 Pasteurella 1 745 8 0 4736 1 species 747 Pasteurella multocida 0 751 1 species 754 Pasteurella dagmatis 3598 0 Actinobacillus 1 713 39 genus 5 846 0 Actinobacillus pleuropneumoniae 715 species 1 67854 Actinobacillus succinogenes 1 species 552 0 1 species 716 Actinobacillus suis 0 683 species 1 Actinobacillus equuli 718 0 1478 0 19746 order 51 1 Chromatiales 135613 324 family 4 11 1 Halothiobacillaceae 255526 0 867 30 1 Halothiobacillus 109262 genus 3 856 0 927 Halothiobacillus neapolitanus 1 species 325 0 0 501 no rank 1 2636392 species 1 Halothiobacillus sp. LS2 1860122 0 501 0 7468 family 17 Ectothiorhodospiraceae 1 72276 164 5 1765964 1 Acidihalobacter 2 genus 463 0 160660 Acidihalobacter prosperus 1 species 458 0 2 genus 133193 Alkalilimnicola 1 6 0 1014 0 1008 1 species 351052 Alkalilimnicola ehrlichii 0 644 1 genus 85108 644 0 1053 Halorhodospira halophila 1 species 0 704 2 genus 1051 Ectothiorhodospira 1 11 2684909 1 no rank 693 0 1 species 1442136 Ectothiorhodospira sp. BSL-9 0 693 3 genus 1335745 1 Spiribacter 22 0 1166 species 1 Spiribacter salinus 1335746 0 380 764 0 1335757 Spiribacter curvatus 1 species genus 6 Thioalkalivibrio 1 106633 129 0 3313 0 316 species 1 Thioalkalivibrio paradoxus 108010 834 0 Thioalkalivibrio versutus 106634 species 1 species 1 Thioalkalivibrio sulfidiphilus 1033854 0 1042 2621013 1 no rank 539 0 0 539 species 1 Thioalkalivibrio sp. K90mix 396595 species 1 Thioalkalivibrio nitratireducens 186931 0 453 family 3 1 Wenzhouxiangellaceae 1676141 7 0 818 0 811 2 genus 1676142 1 Wenzhouxiangella 28 species 1 Wenzhouxiangella marina 1579979 0 783 0 268 family 3 1 Woeseiaceae 1738654 4 6 Woeseia 1 1738655 genus 2 264 0 0 258 1 species 1548547 Woeseia oceani 7879 0 1 Chromatiaceae 1046 30 family 18 2 genus 1 156885 Thioflavicoccus 1 0 827 1 species 80679 Thioflavicoccus mobilis 0 826 0 974 genus 2 17 1 Thiocystis 13724 0 957 species 1 Thiocystis violascens 73141 950 0 31 1 Marichromatium 85076 genus 2 species 1 Marichromatium purpuratum 37487 0 919 1 Allochromatium 85072 2 genus 2 1018 0 Allochromatium vinosum 1049 species 1 1016 0 0 667 no rank 1 82569 1 species 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 667 0 1307 4 genus 1227 1 Nitrosococcus 10 0 573 species 1 Nitrosococcus watsonii 473531 0 429 species 1 Nitrosococcus oceani 1229 295 0 133539 Nitrosococcus halophilus 1 species 421 0 8 Candidatus Nitrosoglobus 1 1980513 genus 2 413 0 1630141 Candidatus Nitrosoglobus terrae 1 species genus 2 Thiodictyon 1 53392 21 0 1685 species 1 Candidatus Thiodictyon syntrophicum 1166950 0 1664 family 3 1 Granulosicoccaceae 449719 2 0 1315 1313 0 1 437504 1 Granulosicoccus 2 genus 0 1312 1 species 437505 Granulosicoccus antarcticus 451214 no rank 2 807 0 807 0 8 1 Thiohalobacter 1273155 genus 2 799 0 Thiohalobacter thiocyanaticus 585455 species 1 order 4 1 Immundisolibacterales 1934945 8 0 1001 1934946 1 Immundisolibacteraceae 11 3 family 993 0 2 genus 1934947 Immundisolibacter 1 10 0 982 0 972 species 1 Immundisolibacter cernigliae 1810504 11 1692040 1 Acidiferrobacterales 6 order 1594 0 1583 0 1 Acidiferrobacteraceae 1692041 48 family 5 2 genus 1692042 1 Sulfurifustis 6 0 611 species 1 Sulfurifustis variabilis 1675686 0 605 1 Sulfuricaulis 1744881 10 genus 2 924 0 1620215 Sulfuricaulis limicola 1 species 914 0 72274 Pseudomonadales 1 718 129 order 166148 0 106135 0 1 Pseudomonadaceae 135621 1014 family 86 0 600 genus 2 1 Oblitimonas 1849530 1 0 599 species 1 Oblitimonas alkaliphila 1697053 2568 0 351 3 subfamily 0 2568 genus 3 13 1 Azotobacter 352 1613 0 353 Azotobacter chroococcum 1 species 0 942 1 species 354 Azotobacter vinelandii 101953 0 4122 286 1 Pseudomonas 80 genus Pseudomonas parafulva 157782 species 1 1084 0 603 0 Pseudomonas rhizosphaerae 216142 species 1 species 1 Pseudomonas entomophila 312306 0 544 0 501 species 1 Pseudomonas silesiensis 1853130 198620 Pseudomonas koreensis 1 species 1053 0 136846 2 species group 5153 0 1 species 74829 Pseudomonas balearica 0 501 0 4652 1 species subgroup 578833 316 Pseudomonas stutzeri 1 species 4652 0 65741 Pseudomonas knackmussii 1 species 839 0 0 646 1 species 1583341 Pseudomonas cerasi 1 species 930166 Pseudomonas brassicacearum 0 1480 136842 species group 2 6037 0 1 species 587753 Pseudomonas chlororaphis 0 4161 0 1876 1 species 296 Pseudomonas fragi 0 896 species 1 Pseudomonas psychrotolerans 237610 1 species 244566 Pseudomonas lurida 0 737 1 species 219572 Pseudomonas antarctica 0 630 136849 species group 8 9545 0 0 366 species 1 Pseudomonas avellanae 46257 2775504 1 no rank 841 0 0 841 species 1 Pseudomonas sp. Lz4W 1206777 species 1 Pseudomonas viridiflava 33069 0 1212 36746 Pseudomonas cichorii 1 species 530 0 Pseudomonas syringae group genomosp. 3 251701 species 1 797 0 0 3736 species subgroup 1 251695 3736 0 317 Pseudomonas syringae 1 species 2063 0 251698 species subgroup 2 species 1 Pseudomonas amygdali 47877 0 987 1 species 29438 Pseudomonas savastanoi 0 1076 0 13637 6 species group 136841 Pseudomonas aeruginosa 287 species 1 5106 0 2990 0 Pseudomonas mendocina 300 species 1 Pseudomonas alcaligenes 43263 species 1 1129 0 0 1137 1 species subgroup 1232139 1137 0 1149133 Pseudomonas furukawaii 1 species species 1 Pseudomonas resinovorans 53412 0 1162 0 2113 species 1 Pseudomonas citronellolis 53408 1 species 237609 Pseudomonas alkylphenolica 0 700 1 species 101564 Pseudomonas alcaliphila 0 1161 Pseudomonas cremoricolorata 157783 species 1 393 0 196821 no rank 30 20495 0 species 1 Pseudomonas sp. FGI182 1259844 0 634 Pseudomonas sp. CCOS 191 1649877 species 1 569 0 species 1 Pseudomonas sp. M30-35 1981174 0 419 379 0 Pseudomonas sp. SWI6 2083051 species 1 1 species 2018067 Pseudomonas sp. FDAARGOS_380 0 485 1248 0 1500687 Pseudomonas sp. St29 1 species 1 species 1898684 Pseudomonas sp. LPH1 0 768 0 744 1 species 1931241 Pseudomonas sp. S-6-2 Pseudomonas sp. GR 6-02 1659194 species 1 561 0 1 species 2083054 Pseudomonas sp. LG1D9 0 585 1 species 1611770 Pseudomonas sp. MRSN12121 0 1028 species 1 Pseudomonas sp. URMO17WK12:I11 1283291 0 1043 0 396 1 species 1207075 Pseudomonas sp. UW4 414 0 1534110 Pseudomonas sp. DR 5-09 1 species 629 0 2083052 Pseudomonas sp. SWI36 1 species 2049589 Pseudomonas sp. HLS-6 1 species 697 0 1294143 Pseudomonas sp. ATCC 13867 1 species 964 0 1 species 2067572 Pseudomonas sp. NC02 0 500 0 394 species 1 Pseudomonas sp. MYb193 1827300 622 0 1338689 Pseudomonas sp. JY-Q 1 species 0 408 1 species 2083053 Pseudomonas sp. SWI44 species 1 Pseudomonas sp. Os17 1500686 0 984 species 1 Pseudomonas sp. XWY-1 2069256 0 793 729 0 2083055 Pseudomonas sp. LH1G9 1 species 854 0 1856685 Pseudomonas sp. TCU-HL1 1 species 1415630 Pseudomonas sp. TKP 1 species 530 0 1 species 1930532 Pseudomonas sp. CC6-YY-74 0 692 69328 Pseudomonas sp. VLB120 1 species 628 0 0 882 1 species 1636610 Pseudomonas sp. PONIH3 1 species 1028989 Pseudomonas sp. StFLB209 0 916 species 1 Pseudomonas frederiksbergensis 104087 0 1402 0 13308 species group 9 136843 species 1 Pseudomonas veronii 76761 0 661 550 0 47879 Pseudomonas corrugata 1 species 0 672 species 1 Pseudomonas mandelii 75612 714 0 200451 Pseudomonas poae 1 species 850 0 Pseudomonas protegens 380021 species 1 Pseudomonas trivialis 200450 species 1 622 0 1 species 294 Pseudomonas fluorescens 0 7832 76758 Pseudomonas orientalis 1 species 484 0 0 923 1 species 47878 Pseudomonas azotoformans 6 species group 136845 0 16648 species 1 Pseudomonas putida 303 0 9512 Pseudomonas monteilii 76759 species 1 2268 0 species 1 Pseudomonas oryzihabitans 47885 0 1123 Pseudomonas fulva 47880 species 1 1592 0 Pseudomonas mosselii 78327 species 1 1465 0 0 688 species 1 Pseudomonas plecoglossicida 70775 1 species 1788301 Pseudomonas versuta 0 339 59295 0 48 468 Moraxellaceae 1 42 family 7462 0 497 1 Psychrobacter 106 11 genus 1076 0 334543 Psychrobacter arcticus 1 species 1 species 45610 Psychrobacter urativorans 0 782 6 no rank 196806 0 3689 species 1 Psychrobacter sp. P2G3 1699622 0 190 1 species 1699624 Psychrobacter sp. P11G5 0 148 0 653 species 1 Psychrobacter sp. DAB_AL43B 1028416 571800 Psychrobacter sp. G 1 species 315 0 0 1283 1 species 349106 Psychrobacter sp. PRwf-1 0 1100 1 species 1720344 Psychrobacter sp. AntiMn-1 0 294 species 1 Psychrobacter cryohalolentis 330922 species 1 Psychrobacter alimentarius 261164 0 1515 0 3783 genus 5 417 Moraxella 1 475 1 species 34062 Moraxella osloensis 0 1133 0 655 1 species 480 Moraxella catarrhalis 1201 0 386891 Moraxella bovoculi 1 species 377 0 29433 Moraxella ovis 1 species 1 Acinetobacter 469 327 genus 25 48002 0 0 7784 7 no rank 196816 1017 0 1636603 Acinetobacter sp. ACNIH1 1 species 1 species 1646498 Acinetobacter sp. TTH0-4 0 948 951 0 Acinetobacter sp. TGL-Y2 1407071 species 1 810 0 2079596 Acinetobacter sp. SWBY1 1 species 1 species 1808001 Acinetobacter sp. LoGeW2-3 0 1576 1758189 Acinetobacter sp. ACNIH2 1 species 1437 0 1608473 Acinetobacter sp. NCu2D-2 1 species 1045 0 202950 1 species 809 0 62977 Acinetobacter sp. ADP1 1 strain 809 0 Acinetobacter equi 1324350 species 1 4634 0 3223 0 Acinetobacter junii 40215 species 1 40216 Acinetobacter radioresistens 1 species 1200 0 1148157 Acinetobacter oleivorans 1 species 1724 0 Acinetobacter larvae 1789224 species 1 1254 0 species 1 Acinetobacter haemolyticus 29430 0 2545 species 1 Acinetobacter johnsonii 40214 0 660 0 458 species 1 Acinetobacter soli 487316 1 species 106648 Acinetobacter bereziniae 0 2310 species 1 Acinetobacter indicus 756892 0 865 0 1312 species 1 Acinetobacter schindleri 108981 909768 5 species group 18897 0 1 species 106654 Acinetobacter nosocomialis 0 2591 48296 Acinetobacter pittii 1 species 4080 0 470 Acinetobacter baumannii 1 species 6470 0 0 3526 1 species 471 Acinetobacter calcoaceticus 2230 0 1785128 Acinetobacter lactucae 1 species order 25 26 1 Cellvibrionales 1706369 0 11752 family 5 2 1 Spongiibacteraceae 1706375 0 1352 1434050 1 genus 528 0 528 0 1470434 Zhongshania aliphaticivorans 1 species genus 1 630749 0 348 348 0 2631504 1 no rank 348 0 1620392 Spongiibacter sp. IMCC21906 1 species 1 1084558 1 Oceanicoccus 2 genus 474 0 species 1 Oceanicoccus sagamiensis 716816 0 473 0 1980 5 family 7 1706373 1 Microbulbiferaceae 0 1973 4 genus 12 48073 1 Microbulbifer 0 653 species 1 Microbulbifer aggregans 1769779 0 607 species 1 Microbulbifer thermotolerans 252514 260552 Microbulbifer agarilyticus 1 species 701 0 0 1284 family 4 6 1 Halieaceae 1706372 1278 0 1 Halioglobus 1217416 7 genus 3 species 1 Halioglobus japonicus 930805 0 727 Halioglobus pacificus 930806 species 1 544 0 0 7110 family 10 104 1 Cellvibrionaceae 1706371 46 10 1 Cellvibrio 4 genus 2079 0 2624793 2 no rank 1302 0 1 species 1987723 Cellvibrio sp. PSBB006 0 594 Cellvibrio sp. PSBB023 1945512 species 1 708 0 731 0 Cellvibrio japonicus 155077 species 1 0 1920 1 genus 2036021 species 1 Agarilytica rhodophyticola 1737490 0 1920 2 genus 2425 Teredinibacter 1 1 0 1127 1126 0 Teredinibacter turnerae 2426 species 1 0 1022 1 genus 447467 0 1022 species 1 Simiduia agarivorans 447471 1 genus 316625 0 858 Saccharophagus degradans 86304 species 1 858 0 0 4607 order 13 1 Methylococcales 135618 8 403 1 Methylococcaceae 21 12 family 4599 0 0 877 genus 2 Methylococcus 1 413 3 Methylococcus capsulatus 414 species 1 874 0 1 762296 1 Methylovulum 2 genus 631 0 1 species 1704499 Methylovulum psychrotolerans 0 630 14 416 Methylomonas 1 5 genus 2340 0 421 Methylomonas methanica 1 species 333 0 0 990 1 no rank 2608980 0 990 1 species 1727196 Methylomonas sp. DH-1 666 0 702114 Methylomonas koyamae 1 species Methylomonas denitrificans 1538553 species 1 337 0 2 39773 Methylomicrobium 1 2 genus 730 0 271065 Methylomicrobium alcaliphilum 1 species 728 0 144 1 Aeromonadales 135624 order 28 31779 0 292 84642 1 Aeromonadaceae 27 family 31635 0 2 genus 43947 1 Tolumonas 14 0 1026 1 species 43948 Tolumonas auensis 0 1012 14 347533 1 Zobellella 2 genus 1403 0 1389 0 Zobellella denitrificans 347534 species 1 1574 0 225143 genus 2 1320 0 Oceanisphaera profunda 1416627 species 1 254 0 Oceanisphaera sp. AMac2203 1903694 species 1 129577 Oceanimonas 1 11 2 genus 1502 0 1491 0 2636315 no rank 1 1491 0 511062 Oceanimonas sp. GK1 1 species 25838 0 642 1 Aeromonas 1471 18 genus 0 1769 1 species 645 Aeromonas salmonicida 811 0 Aeromonas schubertii 652 species 1 species 1 Aeromonas media 651 0 625 0 7763 8 no rank 257493 0 1083 1 species 1636609 Aeromonas sp. ASNIH4 648 0 1636606 Aeromonas sp. ASNIH1 1 species species 1 Aeromonas sp. ASNIH5 1758179 0 739 0 1131 species 1 Aeromonas sp. CA23 2033032 0 955 species 1 Aeromonas sp. ASNIH2 1636607 1008 0 1920107 Aeromonas sp. ASNIH7 1 species 1183 0 Aeromonas sp. CU5 2033033 species 1 1016 0 1636608 Aeromonas sp. ASNIH3 1 species 0 1327 species 1 Aeromonas rivipollensis 948519 species 1 Aeromonas hydrophila 644 0 5905 558964 Aeromonas aquatica 1 species 1255 0 789 0 Aeromonas caviae 648 species 1 196024 Aeromonas dhakensis 1 species 1436 0 1 species 654 Aeromonas veronii 0 2687 12 no rank 118884 0 7248 genus 3 17 Candidatus Thioglobus 1 655184 0 1161 0 372 species 1 Candidatus Thioglobus autotrophicus 1705394 0 772 species 1 Candidatus Thioglobus singularis 1427364 32036 3 clade 2372 0 1386 0 410330 Calyptogena okutanii thioautotrophic gill symbiont 1 species Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 species 1 440 0 1541743 genus 1 546 0 species 1 Candidatus Ruthia magnifica 386487 0 546 693 0 1524249 1 genus species 1 Pseudohongiella spirulinae 1249552 0 693 3 1 Thiolapillus 1608298 genus 2 368 0 Thiolapillus brandeum 1076588 species 1 365 0 198346 clade 1 1783 0 1783 0 Candidatus Baumannia cicadellinicola 186490 species 1 0 871 genus 2 5 Sedimenticola 1 349742 1 species 1543721 Sedimenticola thiotaurini 0 866 order 3 2 1 Cardiobacteriales 135615 0 305 2 family 1 868 Cardiobacteriaceae 1 0 303 1 genus 869 0 302 0 302 species 1 Dichelobacter nodosus 870 order 32 1 Thiotrichales 72273 11 0 34523 family 4 1 Thiotrichaceae 135617 1 0 2470 1226 0 40751 genus 1 Thioploca ingrica 40754 species 1 1226 0 1243 0 Beggiatoa 1 1021 6 genus 2 species 1 Beggiatoa leptomitoformis 288004 0 1237 15 family 34064 1 Francisellaceae 35 0 26112 648 0 3 1 Allofrancisella 1869285 genus 2 645 0 Allofrancisella guangzhouensis 594679 species 1 25429 0 105 Francisella 1 262 genus 12 1242 0 Francisella sp. CA97-1460 1542390 species 1 549298 Francisella halioticida 1 species 1870 0 1495 0 Francisella hispaniensis 622488 species 1 263 Francisella tularensis 1 species 4293 0 Francisella persica 954 species 1 1124 0 2610885 2 no rank 3286 0 1 species 1547445 Francisella sp. FSC1006 0 2275 1011 0 475375 Francisella sp. MA067296 1 species 1 species 657445 Francisella noatunensis 0 2519 species 1 Francisella sp. TX077308 573569 0 1439 4783 0 28110 Francisella philomiragia 1 species species 1 Francisella sp. TX077310 573570 0 3273 15 1 Piscirickettsiaceae 135616 family 12 5930 0 0 632 genus 2 933 0 258 species 1 Thiomicrospira cyclica 147268 0 374 species 1 Thiomicrospira aerophila 92245 0 233 1 genus 28884 233 0 Hydrogenovibrio crunogenus 39765 species 1 783 0 40222 Methylophaga 1 5 3 genus 754476 Methylophaga nitratireducenticrescens 1 species 366 0 0 412 1 species 754477 Methylophaga frappieri 1237 1 genus 1195 0 1238 Piscirickettsia salmonis 1 species 1195 0 Cycloclasticus 1 34067 96 genus 4 3072 0 0 1729 no rank 2 2621467 385025 Cycloclasticus sp. P1 1 species 880 0 species 1 Cycloclasticus sp. PY97N 728003 0 849 1329899 Cycloclasticus zancles 1 species 1247 0 4 order 1775403 1 Nevskiales 2 0 714 family 1 Sinobacteraceae 568386 0 10 0 702 family 2 2689614 469322 1 Steroidobacter 2 2 genus 702 0 species 1 Steroidobacter denitrificans 465721 0 700 43 order 12 135623 1 Vibrionales 0 60876 0 60864 family 42 Vibrionaceae 1 641 314 1 genus 2042066 0 1877 1877 0 Paraphotobacterium marinum 1755811 species 1 43571 0 766 Vibrio 1 662 genus 30 species 1 Vibrio tasmaniensis 212663 0 1183 0 2139 2 no rank 2614977 0 1343 species 1 Vibrio sp. EJY3 1116375 796 0 2014742 Vibrio sp. 2521-89 1 species 688 0 1435069 Vibrio tritonius 1 species 1073 0 Vibrio gazogenes 687 species 1 Vibrio vulnificus 672 species 1 3652 0 0 853 1 species 676 Vibrio fluvialis 1130 0 Vibrio furnissii 29494 species 1 0 19745 species group 10 717610 Vibrio owensii 696485 species 1 1066 0 Vibrio natriegens 691 species 1 2841 0 1 species 669 Vibrio harveyi 0 1705 0 1159 1 species 190895 Vibrio rotiferianus 0 3028 1 species 670 Vibrio parahaemolyticus 3388 0 Vibrio alginolyticus 663 species 1 3235 0 680 Vibrio campbellii 1 species species subgroup 2 2315253 0 2767 0 1345 1 species 50719 Vibrio diabolicus 0 1422 1 species 150340 Vibrio antiquarius 556 0 Vibrio jasicida 766224 species 1 0 1764 species 1 Vibrio cholerae 666 0 522 1 species group 1891919 species 1 Vibrio tubiashii 29498 0 522 1 species 52443 Vibrio tapetis 0 984 913 0 674 Vibrio mimicus 1 species 853 0 Vibrio qinghaiensis 2025808 species 1 1733 0 55601 Vibrio anguillarum 1 species 1465 0 Vibrio coralliilyticus 190893 species 1 species 1 Vibrio nigripulchritudo 28173 0 566 0 722 species 1 Vibrio hyugaensis 1534743 553239 Vibrio breoganii 1 species 1039 0 1781 0 Vibrio scophthalmi 45658 species 1 0 788 genus 2 1 Grimontia 246861 3 785 0 Grimontia hollisae 673 species 1 0 6789 4 genus 10 657 1 Photobacterium 3457 0 Photobacterium profundum 74109 species 1 0 1275 1 species 1295392 Photobacterium gaetbulicola 1 species 38293 Photobacterium damselae 0 2047 0 7525 genus 4 13 1 Aliivibrio 511678 Aliivibrio wodanis 80852 species 1 3131 0 40269 Aliivibrio salmonicida 1 species 1492 0 Aliivibrio fischeri 668 species 1 2889 0 1 Alphaproteobacteria 28211 1070 class 546 303938 0 82 order 204457 Sphingomonadales 1 274 0 39159 family 22 197 Erythrobacteraceae 1 335929 0 8951 0 399 1 genus 2800685 0 399 1 species 543877 Altererythrobacter marensis 0 1254 2 genus 1855416 695 0 Erythrobacter flavus 192812 species 1 species 1 Erythrobacter seohaensis 266951 0 559 0 1064 genus 2 2800681 species 1 Erythrobacter gangjinensis 502682 0 730 334 0 1648404 Erythrobacter atlanticus 1 species genus 3 41 Croceicoccus 1 1295327 0 1119 0 711 1 species 450378 Croceicoccus marinus 1348774 Croceicoccus naphthovorans 1 species 367 0 6 no rank 2800788 0 2361 1090 0 32 1111 Porphyrobacter 1 3 genus 2683265 2 no rank 1058 0 0 529 1 species 1896196 Porphyrobacter sp. LM 6 Porphyrobacter HT-58-2 2023229 species 1 529 0 42 1041 1 Erythrobacter 3 genus 1271 0 0 510 1 species 1112 Porphyrobacter neustonensis 1 species 39960 Erythrobacter litoralis 0 719 4 genus 43 361177 1 Altererythrobacter 0 1655 Altererythrobacter epoxidivorans 361183 species 1 495 0 0 531 species 1 Altererythrobacter ishigakiensis 476157 0 586 species 1 Altererythrobacter atlanticus 1267766 2800682 genus 1 398 0 645517 Altererythrobacter namhicola 1 species 398 0 0 504 2 genus 2800686 species 1 Altererythrobacter dongtanensis 692370 0 266 species 1 Altererythrobacter mangrovi 1982042 0 238 289 1 Sphingomonadaceae 41297 family 59 29934 0 0 7737 15 genus 165695 1 Sphingobium 190 1 species 13690 Sphingobium yanoikuyae 0 600 418 0 120107 Sphingobium cloacae 1 species 332055 Sphingobium indicum 1 species 378 0 1673076 Sphingobium hydrophobicum 1 species 767 0 6 no rank 2611147 0 2828 535 0 Sphingobium sp. TKS 1315974 species 1 407020 Sphingobium sp. MI1205 1 species 306 0 484429 Sphingobium sp. YBL2 1 species 640 0 Sphingobium sp. EP60837 1855519 species 1 346 0 0 456 species 1 Sphingobium sp. SYK-6 627192 0 545 1 species 1843368 Sphingobium sp. RAC03 0 822 1 species 1332080 Sphingobium baderi 46429 Sphingobium chlorophenolicum 1 species 863 0 Sphingobium herbicidovorans 76947 species 1 355 0 516 0 Sphingobium japonicum 332056 species 1 5 genus 165696 1 Novosphingobium 44 0 2822 2644732 no rank 1 683 0 0 683 species 1 Novosphingobium sp. PP1Y 702113 1 species 158500 Novosphingobium resinovorum 0 777 1 species 48935 Novosphingobium aromaticivorans 0 651 Novosphingobium pentaromativorans 205844 species 1 667 0 0 802 genus 2 53 Blastomonas 1 150203 0 749 1 no rank 2626550 749 0 Blastomonas sp. RAC04 1842535 species 1 0 336 genus 1 2709685 0 336 species 1 Sphingorhabdus flavimaris 266812 1 genus 2685927 0 677 677 0 Sphingomonas sp. JJ-A5 1921510 species 1 101 1434046 1 Sphingorhabdus 3 genus 876 0 2 no rank 2614947 0 775 324 0 2077182 Sphingorhabdus sp. YGSMI21 1 species Sphingorhabdus sp. M41 1806885 species 1 451 0 genus 10 166 Sphingopyxis 1 165697 0 4615 917 0 Sphingopyxis macrogoltabida 33050 species 1 0 491 species 1 Sphingopyxis granuli 267128 2614943 no rank 4 1941 0 0 797 species 1 Sphingopyxis sp. 113P3 292913 1 species 1357916 Sphingopyxis sp. QXT-31 0 392 0 366 1 species 1866325 Sphingopyxis sp. MG 0 386 1 species 1913578 Sphingopyxis sp. LPB0140 558 0 117207 Sphingopyxis alaskensis 1 species 285 0 1515612 Sphingopyxis fribergensis 1 species 33052 Sphingopyxis terrae 1 species 257 0 genus 15 203 1 Sphingomonas 13687 0 8888 3774 0 196159 6 no rank Sphingomonas sp. LM7 1938607 species 1 624 0 species 1 Sphingomonas sp. KC8 1030157 0 406 764 0 1327635 Sphingomonas sp. Cra20 1 species 1 species 745310 Sphingomonas sp. MM-1 0 746 species 1 Sphingomonas sp. LK11 1390395 0 618 0 616 species 1 Sphingomonas sp. NIC1 1961362 640 0 Sphingomonas koreensis 93064 species 1 0 738 1 species 152682 Sphingomonas melonis 0 385 species 1 Sphingomonas hengshuiensis 1609977 species 1 Sphingomonas panacis 1560345 0 429 0 484 1 species 1549858 Sphingomonas taxi 862 0 Sphingomonas sanxanigenens 397260 species 1 695 1 Sphingomonas wittichii 160791 species 2 1373 0 Sphingomonas sp. DC-6 1283312 strain 1 678 0 0 661 genus 2 Rhizorhabdus 1 1649486 2 659 0 1850238 Rhizorhabdus dicambivorans 1 species 1 Citromicrobium 72173 9 genus 2 382 0 no rank 1 2630544 0 373 0 373 species 1 Citromicrobium sp. JL477 1634516 genus 2 Zymomonas 1 541 6 0 1849 Zymomonas mobilis 542 species 1 1843 0 0 1796 6 order 2800060 0 1796 6 family 69657 1 Hyphomonadaceae 33 0 840 genus 2 2 1 Hirschia 2723 species 1 Hirschia baltica 2724 0 838 0 923 genus 3 1 Hyphomonas 85 1 530 0 81032 Hyphomonas neptunium 1 species 392 0 2630699 1 no rank 392 0 1906738 Hyphomonas sp. Mor2 1 species 65 order 358 204441 1 Rhodospirillales 0 41819 355 1 Rhodospirillaceae 41295 family 30 24268 0 2188 0 13 1081 1 Rhodospirillum 3 genus 0 655 species 1 Rhodospirillum rubrum 1085 Rhodospirillum centenum 34018 species 1 1520 0 0 1557 2 genus 1543704 1 Niveispirillum 10 1 species 1612173 Niveispirillum cyanobacteriorum 0 1547 0 1667 2 genus 1543705 1 Nitrospirillum 8 1 species 28077 Nitrospirillum amazonense 0 1659 1095 0 1263978 1 genus 1263979 Candidatus Endolissoclinum faulkneri 1 species 1095 0 0 2019 genus 3 15 Thalassospira 1 168934 1281 0 Thalassospira sp. CSC3H3 2048283 species 1 0 723 species 1 Thalassospira xiamenensis 220697 0 639 2 genus 1612157 1 Pararhodospirillum 5 species 1 Pararhodospirillum photometricum 1084 0 634 genus 5 150 1 Azospirillum 191 0 8195 0 988 1 species 1226968 Azospirillum humicireducens 528244 Azospirillum thiophilum 1 species 1519 0 0 2847 species 1 Azospirillum lipoferum 193 0 2691 species 1 Azospirillum brasilense 192 0 1361 genus 2 29 Tistrella 1 171436 Tistrella mobilis 171437 species 1 1332 0 0 254 genus 2 1 Haematospirillum 1804663 1 0 253 species 1 Haematospirillum jordaniae 1549855 1 Magnetospirillum 13134 153 genus 5 4402 0 1364 0 Magnetospirillum gryphiswaldense 55518 species 1 1865 0 2617991 2 no rank 1639348 Magnetospirillum sp. ME-1 1 species 872 0 993 0 1663591 Magnetospirillum sp. XM-1 1 species 0 1020 1 species 84159 Magnetospirillum magneticum 0 536 genus 2 Magnetospira 1 1182780 1 535 0 2685734 no rank 1 1288970 Magnetospira sp. QH-2 1 species 535 0 family 34 Acetobacteraceae 1 433 416 0 17193 0 651 genus 1 91914 species 1 Asaia bogorensis 91915 0 651 Neoasaia 1 320496 10 genus 2 480 0 Neoasaia chiangmaiensis 320497 species 1 470 0 125216 Roseomonas 1 52 3 genus 2083 0 no rank 1 2617492 0 1109 1109 0 Roseomonas sp. FDAARGOS_362 2018065 species 1 922 0 257708 Roseomonas gilardii 1 species genus 3 105 1 Acidiphilium 522 0 967 species 1 Acidiphilium multivorum 62140 0 428 Acidiphilium cryptum 524 species 1 434 0 1860 0 441 1 Gluconobacter 54 3 genus 489 0 Gluconobacter albidus 318683 species 1 442 Gluconobacter oxydans 1 species 1317 0 0 2408 5 genus 1434011 Komagataeibacter 1 98 1 species 33995 Komagataeibacter europaeus 0 367 1 species 28448 Komagataeibacter xylinus 0 1028 species 1 Komagataeibacter medellinensis 1177712 0 409 species 1 Komagataeibacter nataicola 265960 0 506 genus 2 14 Granulibacter 1 364409 0 1118 1104 0 364410 Granulibacter bethesdensis 1 species 1602345 Parasaccharibacter 1 1 2 genus 659 0 658 0 1510841 Parasaccharibacter apium 1 species genus 2 1 Gluconacetobacter 89583 12 0 606 0 594 species 1 Gluconacetobacter diazotrophicus 33996 1 Kozakia 153497 10 genus 2 446 0 species 1 Kozakia baliensis 153496 0 436 Acetobacter 1 434 114 genus 8 5499 0 381 0 151157 subgenus 1 species 1 Acetobacter aceti 435 0 381 2290 0 438 Acetobacter pasteurianus 1 species Acetobacter tropicalis 104102 species 1 599 0 Acetobacter persici 1076596 species 1 538 0 0 746 species 1 Acetobacter senegalensis 446692 0 509 1 species 65959 Acetobacter pomorum 0 322 1 species 1633874 Acetobacter oryzifermentans 343 0 255473 order 3 343 0 4 255474 Parvularculaceae 1 3 family 339 0 208215 Parvularcula 1 1 2 genus 0 338 1 species 208216 Parvularcula bermudensis 3945 0 3 Pelagibacterales 1 54526 order 8 2465 0 1 Pelagibacteraceae 1655514 15 family 6 no rank 2 1655516 0 990 475 0 859653 alpha proteobacterium HIMB5 1 species 0 515 species 1 alpha proteobacterium HIMB59 744985 0 1460 3 genus 198251 1 Candidatus Pelagibacter 3 2647897 no rank 1 839 0 0 839 1 species 1002672 Candidatus Pelagibacter sp. IMCC9063 0 618 species 1 Candidatus Pelagibacter ubique 198252 2045213 genus 1 1477 0 1477 0 Candidatus Fonsibacter ubiquis 1925548 species 1 1078 356 1 Rhizobiales 206 order 128159 0 3509 0 1 Aurantimonadaceae 255475 28 family 7 414371 1 Aureimonas 12 2 genus 596 0 0 584 no rank 1 2615206 0 584 species 1 Aureimonas sp. AU20 1349819 64 293088 Martelella 1 4 genus 2885 0 1 no rank 2629616 0 814 1 species 686597 Martelella sp. AD-3 0 814 1031 0 Martelella endophytica 1486262 species 1 1 species 293089 Martelella mediterranea 0 976 6 1 Chelatococcaceae 2036754 family 4 1445 0 0 1439 genus 3 44 Chelatococcus 1 28209 2638111 1 no rank 936 0 936 0 1702325 Chelatococcus sp. CO-6 1 species Chelatococcus daeguensis 444444 species 1 459 0 1469 0 4 1 Methylocystaceae 31993 family 6 0 508 2 genus 11 425 Methylosinus 1 0 497 1 species 426 Methylosinus trichosporium 0 957 genus 3 Methylocystis 1 133 15 299 0 655015 Methylocystis bryophila 1 species 1 no rank 2625913 0 643 1 species 187303 Methylocystis sp. SC2 0 643 419 0 3 119043 Rhodobiaceae 1 3 family 0 416 genus 2 4 Parvibaculum 1 256616 0 412 1 species 256618 Parvibaculum lavamentivorans 20 family 118882 1 Brucellaceae 30 0 5304 Brucella 1 234 1323 genus 14 2425 0 0 84 1 species 36855 Brucella canis 981386 Brucella vulpis 1 species 186 0 0 22 species 1 Brucella ovis 236 34 0 Brucella microti 444163 species 1 species 1 Brucella abortus 235 0 41 50 0 29459 Brucella melitensis 1 species 81 0 Brucella pinnipedialis 120576 species 1 0 43 species 1 Brucella suis 29461 0 91 1 species 120577 Brucella ceti 2632610 no rank 4 470 0 130 0 1844051 Brucella sp. 09RB8910 1 species 0 29 species 1 Brucella sp. 2002734562 1891098 species 1 Brucella sp. 09RB8471 1149952 0 120 1 species 1885919 Brucella sp. 141012304 0 191 5 genus 528 Ochrobactrum 1 72 0 2849 0 755 species 1 Ochrobactrum sp. A44 271865 419475 Ochrobactrum pseudogrignonense 1 species 552 0 species 1 Ochrobactrum anthropi 529 0 642 571256 Ochrobactrum pituitosum 1 species 828 0 7918 0 45401 1 Hyphomicrobiaceae 49 17 family 0 243 genus 1 1068 1 species 1069 Rhodomicrobium vannielii 0 243 1 Devosia 46913 48 genus 4 2705 0 2657 0 196773 3 no rank 1167 0 1736675 Devosia sp. A16 1 species Devosia sp. H5989 1643450 species 1 835 0 655 0 2083786 Devosia sp. I507 1 species 1082930 1 genus 529 0 1 species 531813 Pelagibacterium halotolerans 0 529 0 2365 genus 4 Hyphomicrobium 1 81 7 53399 Hyphomicrobium denitrificans 1 species 510 0 945 0 2619925 no rank 1 0 945 species 1 Hyphomicrobium sp. MC1 717785 1427356 Hyphomicrobium nitrativorans 1 species 903 0 17 1 Blastochloris 59282 genus 2 508 0 491 0 Blastochloris viridis 1079 species 1 865 0 30 29407 Rhodoplanes 1 2 genus 0 835 no rank 1 2619116 674703 Rhodoplanes sp. Z2-YC6860 1 species 835 0 654 0 2 119044 1 Filomicrobium 2 genus species 1 Candidatus Filomicrobium marinum 1608628 0 652 0 40223 family 52 344 1 Rhizobiaceae 82115 no rank 10 227292 0 8348 0 1963 genus 3 1 Ensifer 106591 48 species 1 Ensifer sojae 716925 0 907 1008 0 Ensifer adhaerens 106592 species 1 7 genus 121 28105 1 Sinorhizobium 0 6385 663276 species group 1 1574 0 1574 0 380 Sinorhizobium fredii 1 species species 1 Sinorhizobium medicae 110321 0 724 1027 0 194963 Sinorhizobium americanum 1 species 1520 0 2613772 no rank 2 1 species 794846 Sinorhizobium sp. CCBAU 05631 0 395 species 1 Sinorhizobium sp. RAC02 1842534 0 1125 0 1419 species 1 Sinorhizobium meliloti 382 1061 0 323620 Shinella 1 2 2 genus 0 1059 no rank 1 2643062 1059 0 Shinella sp. HZN7 879274 species 1 6 genus 13 34019 Liberibacter 1 0 2704 1247 0 Liberibacter crescens 1273132 species 1 46 0 Candidatus Liberibacter asiaticus 34021 species 1 0 418 species 1 Candidatus Liberibacter africanus 34020 330 0 556287 Candidatus Liberibacter solanacearum 1 species 650 0 Candidatus Liberibacter americanus 309868 species 1 no rank 33 227290 0 27766 0 7877 genus 7 1 Agrobacterium 357 161 878 0 Agrobacterium vitis 373 species 1 Agrobacterium rhizogenes 359 species 1 965 0 4631 0 1183400 species group 2 species 1 Agrobacterium tumefaciens 358 0 3591 1040 0 Agrobacterium fabrum 1176649 species 1 2 no rank 2632611 0 1242 Agrobacterium sp. RAC06 1842536 species 1 558 0 0 684 1 species 861208 Agrobacterium sp. H13-3 24 genus 379 1 Rhizobium 1418 0 18590 species 1 Rhizobium etli 29449 0 1766 0 4172 1 species 384 Rhizobium leguminosarum 56730 Rhizobium gallicum 1 species 1211 0 8066 0 2613769 18 no rank 845 0 Rhizobium sp. 10195 2028343 species 1 1 species 1703967 Rhizobium sp. N741 0 6 Rhizobium sp. TAL182 2020313 species 1 73 0 2020311 Rhizobium sp. Kim5 1 species 453 0 Rhizobium sp. ACO-34A 1571470 species 1 1149 0 1703966 Rhizobium sp. N731 1 species 72 0 534 0 Rhizobium sp. CIAT894 2020312 species 1 749 0 Rhizobium sp. NXC24 2048897 species 1 1703962 Rhizobium sp. N1341 1 species 6 0 5 0 Rhizobium sp. N113 1703960 species 1 1 species 1703961 Rhizobium sp. N1314 0 72 Rhizobium sp. NT-26 1125847 species 1 423 0 478 0 1301032 Rhizobium sp. IE4771 1 species 808 0 Rhizobium sp. IRBG74 424182 species 1 1703969 Rhizobium sp. N324 1 species 618 0 763 0 1869170 Rhizobium sp. S41 1 species 353 0 1981173 Rhizobium sp. NXC14 1 species species 1 Rhizobium sp. Y9 1914541 0 659 396 Rhizobium phaseoli 1 species 1198 0 species 1 Rhizobium tropici 398 0 759 1299 0 1 1 Neorhizobium 1525371 genus 2 1 species 399 Neorhizobium galegae 0 1298 18 family 772 Bartonellaceae 1 15 0 14731 773 1 Bartonella 222 17 genus 14716 0 388640 Bartonella australis 1 species 1070 0 Bartonella tribocorum 85701 species 1 656 0 Bartonella grahamii 33045 species 1 1020 0 1 species 33047 Bartonella vinsonii 0 278 1 species 803 Bartonella quintana 0 203 388 0 56426 Bartonella clarridgeiae 1 species 895 0 1686310 Bartonella apis 1 species 0 1919 1 species 1318743 Bartonella ancashensis 0 6235 no rank 6 2645622 0 738 species 1 Bartonella sp. JB15 1933906 0 593 species 1 Bartonella sp. A1379B 1933910 Bartonella sp. 1-1C 515256 species 1 1402 0 0 2497 1 species 1933904 Bartonella sp. WD16.2 738 0 1933907 Bartonella sp. JB63 1 species 1 species 1933912 Bartonella sp. Raccoon60 0 267 0 1098 species 1 Bartonella henselae 38323 732 0 774 Bartonella bacilliformis 1 species 13611 0 1 Methylobacteriaceae 119045 48 family 15 1 Microvirga 186650 25 genus 2 1107 0 1882682 Microvirga ossetica 1 species 1082 0 2282523 genus 3 4230 0 Methylobacterium populi 223967 species 1 1170 0 0 769 1 species 29429 Methylobacterium zatmanii Methylobacterium extorquens 408 species 1 2291 0 9 genus 373 407 Methylobacterium 1 0 8226 1327 0 Methylobacterium aquaticum 270351 species 1 1237 0 31998 Methylobacterium radiotolerans 1 species 1 species 334852 Methylobacterium oryzae 0 739 no rank 3 2615210 0 3048 0 840 1 species 925818 Methylobacterium sp. AMS5 0 1139 species 1 Methylobacterium sp. 4-46 426117 1069 0 1479019 Methylobacterium sp. C1 1 species species 1 Methylobacterium phyllosphaerae 418223 0 721 Methylobacterium nodulans 114616 species 1 781 0 Bradyrhizobiaceae 1 41294 254 family 25 20327 0 4380 0 70 1 Rhodopseudomonas 1073 genus 2 1076 Rhodopseudomonas palustris 1 species 4310 0 13 1649510 Variibacter 1 2 genus 689 0 676 0 Variibacter gotjawalensis 1333996 species 1 911 2 genus 618 0 261 0 Nitrobacter hamburgensis 912 species 1 357 0 Nitrobacter winogradskyi 913 species 1 10682 0 363 Bradyrhizobium 1 374 genus 11 1600 0 375 Bradyrhizobium japonicum 1 species 44255 Bradyrhizobium oligotrophicum 1 species 649 0 Bradyrhizobium diazoefficiens 1355477 species 1 2044 0 no rank 6 2631580 0 5301 376 Bradyrhizobium sp. 1 species 1166 0 Bradyrhizobium sp. ORS 285 115808 species 1 646 0 1013 0 Bradyrhizobium sp. ORS 278 114615 species 1 844 0 2057741 Bradyrhizobium sp. SK17 1 species 1 species 288000 Bradyrhizobium sp. BTAi1 0 632 1000 0 Bradyrhizobium sp. CCGE-LA001 1223566 species 1 1274631 Bradyrhizobium icense 1 species 725 0 1 Bosea 85413 58 genus 5 3203 0 1036 0 Bosea vaviloviae 1526658 species 1 0 2109 3 no rank 2653178 802 0 Bosea sp. RAC05 1842539 species 1 Bosea sp. PAMC 26642 1792307 species 1 648 0 0 659 species 1 Bosea sp. AS-1 2015316 0 501 2 genus 40136 Oligotropha 1 9 492 0 Oligotropha carboxidovorans 40137 species 1 1710 0 3 45404 1 Beijerinckiaceae 5 family 2 genus 120652 1 Methylocella 5 0 879 Methylocella silvestris 199596 species 1 874 0 genus 2 Beijerinckia 1 532 6 0 828 533 Beijerinckia indica 1 species 822 0 1 Phyllobacteriaceae 69277 100 family 20 10966 0 0 1008 2 genus 2 245876 1 Nitratireductor 1006 0 Nitratireductor basaltis 472175 species 1 1038 0 2 31988 Aminobacter 1 2 genus Aminobacter aminovorans 83263 species 1 1036 0 0 561 2 genus 11 28100 Phyllobacterium 1 550 0 1867719 Phyllobacterium zundukense 1 species 0 6867 9 genus 100 68287 1 Mesorhizobium Mesorhizobium australicum 536018 species 1 687 0 Mesorhizobium loti 381 species 1 844 0 956 0 325217 no rank 1 956 0 278153 Mesorhizobium sp. WSM1497 1 species 739 0 Mesorhizobium japonicum 2066070 species 1 0 885 1 species 593909 Mesorhizobium opportunistum species 1 Mesorhizobium ciceri 39645 0 1462 Mesorhizobium amorphae 71433 species 1 663 0 Mesorhizobium sp. B7 1670800 species 1 531 0 449972 1 Chelativorans 2 2 genus 648 0 0 646 no rank 1 2643807 266779 Chelativorans sp. BNC1 1 species 646 0 744 0 1 274591 Hoeflea 1 2 genus 0 743 1 no rank 2614931 0 743 species 1 Hoeflea sp. IMCC20628 1620421 119042 no rank 6 2059 0 2 genus 1734920 1 Pseudorhodoplanes 32 0 526 0 494 1 species 1235591 Pseudorhodoplanes sinuspersici 842 0 7 1572860 1 Hartmannibacter 2 genus 835 0 1482074 Hartmannibacter diazotrophicus 1 species 691 0 16 1484898 Methyloceanibacter 1 2 genus Methyloceanibacter caenitepidi 1384459 species 1 675 0 37 1 Xanthobacteraceae 335928 family 7 3390 0 2 genus 10 279 1 Xanthobacter 0 1196 0 1186 1 species 280 Xanthobacter autotrophicus 1166 0 12 1 Azorhizobium 6 genus 2 Azorhizobium caulinodans 7 species 1 1154 0 991 0 17 152053 Starkeya 1 2 genus 974 0 921 Starkeya novella 1 species 0 12871 order 20 135 Caulobacterales 1 204458 0 12736 family 19 197 1 Caulobacteraceae 76892 81440 no rank 1 493 0 species 1 Caulobacteraceae bacterium OTSz_A_272 1759059 0 493 3779 0 60 Brevundimonas 1 41275 genus 7 0 1673 no rank 3 2622653 1 species 1827469 Brevundimonas sp. GW460-12-10-14-LB2 0 569 625 0 Brevundimonas sp. LM2 1938605 species 1 1532555 Brevundimonas sp. DS20 1 species 479 0 species 1 Brevundimonas naejangsanensis 588932 0 808 1 species 41276 Brevundimonas vesicularis 0 629 609 0 Brevundimonas subvibrioides 74313 species 1 0 732 genus 2 7 1 Phenylobacterium 20 Phenylobacterium zucineum 284016 species 1 725 0 6673 0 75 1 Caulobacter 83 6 genus 0 2166 no rank 1 2648921 species 1 Caulobacter sp. K31 366602 0 2166 species 1 Caulobacter mirabilis 69666 0 681 Caulobacter henricii 69395 species 1 784 0 863 0 88688 Caulobacter segnis 1 species Caulobacter vibrioides 155892 species 1 2096 0 862 0 76890 Asticcacaulis 1 2 2 genus 860 0 78587 Asticcacaulis excentricus 1 species 446 0 2800059 order 2 2 family 2800061 0 446 74317 1 Maricaulis 4 2 genus 446 0 442 0 Maricaulis maris 74318 species 1 1 Rickettsiales 766 34 order 53 18303 0 1852 0 1699067 no rank 1 0 1852 species 1 Rickettsiales bacterium Ac37b 1528098 26 family 2 775 1 Rickettsiaceae 0 10249 10030 0 33988 24 tribe 69474 1 genus 1654 0 species 1 Orientia tsutsugamushi 784 0 1654 1 Rickettsia 780 863 genus 23 8376 0 114292 2 species group 1283 0 Rickettsia typhi 785 species 1 434 0 849 0 Rickettsia prowazekii 782 species 1 17 species group 114277 0 4083 0 138 1 species 35792 Rickettsia parkeri 0 35 species 1 Rickettsia heilongjiangensis 226665 Rickettsia australis 787 species 1 779 0 1 species 33992 Rickettsia rhipicephali 0 203 150 0 Rickettsia montanensis 33991 species 1 Rickettsia slovaca 35794 species 1 241 0 species 1 Rickettsia amblyommatis 33989 0 150 0 169 species 1 Rickettsia akari 786 0 248 1 species 35791 Rickettsia massiliae 0 887 1 species 42862 Rickettsia felis 35788 Rickettsia africae 1 species 238 0 Rickettsia japonica 35790 species 1 30 0 243 0 Rickettsia peacockii 47589 species 1 species 1 Rickettsia rickettsii 783 0 145 781 Rickettsia conorii 1 species 77 0 1 species 109232 Rickettsia monacensis 0 333 species 1 Rickettsia philipii 1105106 0 17 0 710 1 no rank 114295 0 710 species 1 Rickettsia endosymbiont of Bemisia tabaci 337479 species group 2 1129742 0 1437 Rickettsia bellii 33990 species 1 896 0 Rickettsia canadensis 788 species 1 541 0 2115980 1 genus 217 0 Candidatus Phycorickettsia trachydisci 2115978 species 1 217 0 942 1 Anaplasmataceae 4 23 family 5634 0 131 0 768 Anaplasma 1 1 4 genus 1 species group 106179 0 41 948 Anaplasma phagocytophilum 1 species 41 0 43 0 Anaplasma centrale 769 species 1 0 46 1 species 770 Anaplasma marginale 952 tribe 8 2556 0 genus 8 Wolbachia 1 953 5 0 2556 2551 0 2640676 7 no rank 290 0 246273 Wolbachia endosymbiont of Cimex lectularius 1 species 1 species 100901 Wolbachia endosymbiont of Onchocerca ochengi 0 603 66084 Wolbachia sp. wRi 1 species 158 0 188 0 Wolbachia endosymbiont of Brugia malayi 80849 species 1 1 species 77038 Wolbachia endosymbiont of Drosophila simulans 0 1019 Wolbachia endosymbiont of Onchocerca volvulus 77551 species 1 117 0 1 species 163164 Wolbachia endosymbiont of Drosophila melanogaster 0 176 0 2383 genus 6 1 Ehrlichia 943 3 4 species group 106178 0 1880 0 817 1 species 779 Ehrlichia ruminantium 268 0 35795 Ehrlichia muris 1 species Ehrlichia canis 944 species 1 299 0 945 Ehrlichia chaffeensis 1 species 496 0 106181 no rank 1 500 0 species 1 Ehrlichia sp. HF 391036 0 500 560 0 4 33993 1 Neorickettsia 4 genus 230 0 950 Neorickettsia risticii 1 species 33994 Neorickettsia helminthoeca 1 species 80 0 246 0 Neorickettsia sennetsu 951 species 1 0 534 family 2 1328881 1 Candidatus Midichloria 411566 1 genus 2 534 0 species 1 Candidatus Midichloria mitochondrii 234827 0 533 order 2 1 Magnetococcales 1 1191478 0 1397 1191479 family 1 1396 0 0 1396 1 genus 162171 1124597 Magnetococcus marinus 1 species 1396 0 1767 0 18 1921002 1 Holosporales 7 order 0 767 3 family 2100208 1 Caedimonadaceae 1 Candidatus Nucleicultrix 1 1509243 1 genus 2 766 0 765 0 1509244 Candidatus Nucleicultrix amoebiphila 1 species 0 760 family 1 44746 0 760 1 no rank 204454 0 760 species 1 endosymbiont of Acanthamoeba sp. UWC8 86106 1 Candidatus Paracaedibacteraceae 1777752 8 family 2 222 0 214 0 1521255 genus 1 214 0 Candidatus Paracaedibacter acanthamoebae 91604 species 1 49523 0 1 Rhodobacterales 204455 354 order 84 0 49169 83 family 31989 1 Rhodobacteraceae 633 0 862 2 genus 191028 1 Leisingera 11 0 851 species 1 Leisingera methylohalidivorans 133924 1759396 1 genus 486 0 1 no rank 2622455 0 486 0 486 1 species 1920883 Marivivens sp. JLT3646 0 713 genus 2 8 1 Jannaschia 188905 2645469 no rank 1 705 0 0 705 1 species 290400 Jannaschia sp. CCS1 0 592 genus 1 309512 0 592 species 1 Dinoroseobacter shibae 215813 genus 1 1649279 0 989 989 0 Ruegeria mobilis 379347 species 1 19 360528 Pelagibaca 1 2 genus 1067 0 1250539 Pelagibaca abyssi 1 species 1048 0 18 875170 Celeribacter 1 5 genus 2216 0 1 species 1208324 Celeribacter indicus 0 627 186 0 1397108 Celeribacter marinus 1 species species 1 Celeribacter ethanolicus 1758178 0 449 1 species 1411902 Celeribacter manganoxidans 0 936 0 1483 2 genus 30 227873 1 Pannonibacter species 1 Pannonibacter phragmitetus 121719 0 1453 0 3885 5 genus 35 1060 Rhodobacter 1 956 0 196779 2 no rank species 1 Rhodobacter sp. LPB0142 1850250 0 516 species 1 Rhodobacter sp. CZR27 2033869 0 440 0 1910 1 species 1063 Rhodobacter sphaeroides species 1 Rhodobacter capsulatus 1061 0 984 0 1396 genus 4 1 Octadecabacter 53945 1 420 0 1217908 Octadecabacter antarcticus 1 species 696 0 1458307 Octadecabacter temperatus 1 species 1 species 53946 Octadecabacter arcticus 0 279 729 0 3 Confluentimicrobium 1 1609958 genus 2 726 0 2643318 no rank 1 1609966 Confluentimicrobium sp. EMB200-NS6 1 species 726 0 1 genus 2211641 0 787 787 0 Loktanella vestfoldensis 245188 species 1 genus 5 90 1 Phaeobacter 302485 0 4813 1 species 221822 Phaeobacter inhibens 0 1726 1406 0 Phaeobacter gallaeciensis 60890 species 1 429 0 1844006 Phaeobacter porticola 1 species 0 1162 1 species 1580596 Phaeobacter piscinae 2433 2 genus 942 0 species 1 Roseobacter denitrificans 2434 0 410 532 0 42443 Roseobacter litoralis 1 species 19 478070 1 Labrenzia 4 genus 2566 0 824 0 Labrenzia aggregata 187304 species 1 0 1723 2 no rank 2648686 954 0 2021862 Labrenzia sp. VG12 1 species 769 0 1674922 Labrenzia sp. CP4 1 species 1580 0 1 Sulfitobacter 60136 1 genus 3 no rank 1 196795 0 780 780 0 1917485 Sulfitobacter sp. AM1-D1 1 species Sulfitobacter pseudonitzschiae 1402135 species 1 799 0 92944 Ketogulonicigenium 1 3 3 genus 1139 0 634 0 92945 Ketogulonicigenium vulgare 1 species 92947 Ketogulonicigenium robustum 1 species 502 0 0 522 2 genus 299261 Tateyamaria 1 1 521 0 Tateyamaria omphalii 299262 species 1 111 1 Marinovum 367771 genus 2 1001 0 42444 Marinovum algicola 1 species 890 0 74032 1 genus 637 0 637 0 74033 Antarctobacter heliothermus 1 species 4 genus 133 34008 1 Rhodovulum 0 2104 species 1 Rhodovulum sulfidophilum 35806 0 975 0 996 no rank 2 2631432 Rhodovulum sp. MB263 308754 species 1 446 0 1564506 Rhodovulum sp. P5 1 species 550 0 1780 0 1 Ruegeria 97050 10 genus 3 species 1 Ruegeria pomeroyi 89184 0 1246 no rank 1 2625375 0 524 0 524 1 species 292414 Ruegeria sp. TM1040 0 313 1 genus 1579315 species 1 Halocynthiibacter arcticus 1579316 0 313 419 0 119541 genus 1 441209 Rhodobaca barguzinensis 1 species 419 0 1 genus 1284657 0 181 species 1 Planktomarina temperata 1284658 0 181 58840 2 no rank 912 0 Rhodobacteraceae bacterium QY30 2033435 species 1 533 0 1 species 1904441 Rhodobacteraceae bacterium 0 379 0 628 genus 2 1 Roseovarius 74030 5 1 species 215743 Roseovarius mucosus 0 623 687 0 159345 1 genus 687 0 Roseibacterium elongatum 159346 species 1 58842 Sagittula 1 3 2 genus 1359 0 no rank 1 2624628 0 1356 0 1356 1 species 2009329 Sagittula sp. P11 1 genus 245186 Loktanella 0 3 0 7984 genus 9 Paracoccus 1 265 123 737 0 Paracoccus contaminans 1945662 species 1 0 499 species 1 Paracoccus aminophilus 34003 species 1 Paracoccus denitrificans 266 0 1595 species 1 Paracoccus zhejiangensis 1077935 0 1015 species 1 Paracoccus aminovorans 34004 0 976 1 no rank 246570 0 824 Paracoccus sp. BM15 1529068 species 1 824 0 2065379 Paracoccus sp. CBA4604 1 species 767 0 0 1448 species 1 Paracoccus yeei 147645 2340 0 263377 2 genus 1 species 1229727 Thiobacimonas profunda 0 1218 2640570 no rank 1 1122 0 0 1122 species 1 Yangia sp. CCB-MM3 1792508 0 428 1 genus 285107 1 species 1915078 Thioclava nitratireducens 0 428 993 0 4 1097466 1 Defluviimonas 2 genus 0 989 1 species 1335048 Defluviimonas alba no rank 7 82117 0 3340 0 799 genus 2 1 Micavibrio 213485 10 species 1 Micavibrio aeruginosavorus 349221 0 789 0 595 2 genus 991903 Polymorphum 1 1 0 594 species 1 Polymorphum gilvum 991904 0 1042 genus 2 6 Phreatobacter 1 1632780 1036 0 1868589 Phreatobacter sp. S-12 1 species 1 clade 62654 0 904 genus 1 767891 0 904 species 1 Candidatus Puniceispirillum marinum 767892 0 904 580370 4 class 1218 0 1 Mariprofundales 1 580371 order 4 1218 0 0 1217 3 family 580372 1 Mariprofundaceae 7 2 genus 377315 0 1210 Mariprofundus ferrinatatus 1921087 species 1 634 0 1 species 1921086 Mariprofundus aestuarium 0 576 0 102189 24 phylum 32066 0 102189 class 24 60 1 Fusobacteriia 203490 23 order 203491 1 Fusobacteriales 393 0 102129 11 1 Leptotrichiaceae 1129771 family 11 19376 0 genus 5 9 Leptotrichia 1 32067 0 11639 species 1 Leptotrichia buccalis 40542 0 2746 0 8884 no rank 3 2633022 species 1 Leptotrichia sp. oral taxon 498 712368 0 2483 species 1 Leptotrichia sp. oral taxon 212 712357 0 4201 Leptotrichia sp. oral taxon 847 1785996 species 1 2200 0 2 34104 1 Streptobacillus 2 genus 2002 0 Streptobacillus moniliformis 34105 species 1 2000 0 0 3152 genus 2 1 Sneathia 168808 2 Sneathia amnii 187101 species 1 3150 0 2572 0 32068 genus 1 0 2572 species 1 Sebaldella termitidis 826 203492 1 Fusobacteriaceae 65 11 family 82360 0 78562 0 848 1 Fusobacterium 106 9 genus 856 Fusobacterium varium 1 species 13199 0 4750 0 861 Fusobacterium ulcerans 1 species species 1 Fusobacterium nucleatum 851 0 24582 0 8971 1 species 1583098 Fusobacterium hwasookii 850 Fusobacterium mortiferum 1 species 5809 0 0 2713 species 1 Fusobacterium gonidiaformans 849 0 2589 species 1 Fusobacterium necrophorum 859 0 15843 1 species 860 Fusobacterium periodonticum 167639 1 genus 3733 0 167642 Ilyobacter polytropus 1 species 3733 0 no rank 3 2323 0 1544 clade 3 1783234 0 1544 2 clade 95901 0 1444 1444 0 2497643 class 2 1444 0 2497644 2 order 0 1444 family 2 2497645 genus 2 1 1 Candidatus Babela 1551504 0 1444 0 1443 species 1 Candidatus Babela massiliensis 673862 1 phylum 95818 0 100 1895827 no rank 1 100 0 0 100 species 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 200940 7 phylum 4645 0 0 4645 7 class 67799 0 4645 7 order 188710 0 4645 7 family 3 188711 1 Thermodesulfobacteriaceae 2 genus 1 444090 Caldimicrobium 1 0 1002 0 1001 1 species 1653476 Caldimicrobium thiodismutans 241192 1 genus 1150 0 1 species 171695 Thermodesulfatator indicus 0 1150 2490 0 Thermodesulfobacterium 1 1740 1 genus 3 0 613 species 1 Thermodesulfobacterium commune 1741 1876 0 Thermodesulfobacterium geofontis 1295609 species 1 name 0 1 0