members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 31 4782 44655 25756619 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 Bacteria 109 2 1 0 25643154 4469 superkingdom 25 phylum 0 5891 200783 11 1 187857 Aquificae 25 class 0 5891 Desulfurobacteriales 1 1485951 5 946 0 order 6 family 5 941 0 1 558314 3 Desulfurobacteriaceae genus 2 561 0 1 64159 3 Desulfurobacterium Desulfurobacterium thermolithotrophum 64160 0 558 1 species 2 genus 0 377 2 1 171868 Thermovibrio 375 0 species 1 Thermovibrio ammonificans 228745 22 32069 1 Aquificales 18 order 0 4934 11 family 0 2942 59 1 64898 Aquificaceae Hydrogenobaculum 168657 1 26 1969 0 genus 6 2622382 1943 0 no rank 5 380749 Hydrogenobaculum sp. Y04AAS1 1 species 0 275 0 417 1 species Hydrogenobaculum sp. SN 547146 Hydrogenobaculum sp. HO 547144 417 0 species 1 1 species 0 417 547143 Hydrogenobaculum sp. 3684 1 species 0 417 547145 Hydrogenobaculum sp. SHO 2713 0 159 1 genus 0 159 1 species Aquifex aeolicus 63363 939 363 0 genus 1 Hydrogenobacter thermophilus 940 0 363 1 species 2 genus 0 392 75905 0 173 1 species Thermocrinis ruber 75906 136094 Thermocrinis albus species 1 219 0 90150 306 0 no rank 2 306 0 genus 2 Thermosulfidibacter 1 412592 2 412593 Thermosulfidibacter takaii 1 species 0 304 0 1664 4 family Hydrogenothermaceae 5 1 224027 1216 0 genus 2 212790 2619248 732 0 no rank 1 species 1 732 0 436114 Sulfurihydrogenibium sp. YO3AOP1 Sulfurihydrogenibium azorense 309806 484 0 species 1 genus 1 443 0 182899 species 1 443 0 309805 Persephonella marina 32066 33214 0 phylum 24 0 33214 24 class Fusobacteriia 28 1 203490 Fusobacteriales 59 1 203491 0 33186 23 order family 12 23242 0 203492 1 31 Fusobacteriaceae 9 genus 0 21764 70 1 848 Fusobacterium 0 4455 1 species Fusobacterium periodonticum 860 0 1083 1 species Fusobacterium gonidiaformans 849 1887 0 species 1 Fusobacterium mortiferum 850 0 1956 1 species Fusobacterium hwasookii 1583098 Fusobacterium ulcerans 861 1590 0 species 1 Fusobacterium nucleatum 851 6269 0 species 1 859 Fusobacterium necrophorum 1 species 0 849 3605 0 species 1 Fusobacterium varium 856 Ilyobacter 1 167639 1 1447 0 genus 2 1446 0 species 1 Ilyobacter polytropus 167642 35 1129771 1 Leptotrichiaceae 10 family 0 9885 1115 0 genus 2 Sneathia 1 168808 1 0 1114 1 species Sneathia amnii 187101 34104 1067 0 genus 1 species 1 1067 0 34105 Streptobacillus moniliformis genus 1 2028 0 32068 1 species 0 2028 826 Sebaldella termitidis 5 genus 0 5640 22 1 32067 Leptotrichia species 1 1254 0 40542 Leptotrichia buccalis 3 no rank 0 4364 2633022 1 species 0 1274 1785996 Leptotrichia sp. oral taxon 847 712368 Leptotrichia sp. oral taxon 498 species 1 1111 0 0 1979 1 species Leptotrichia sp. oral taxon 212 712357 57723 20 phylum 0 13419 5 1562566 1 Blastocatellia 3 class 0 1130 458032 1 8 Chloracidobacterium genus 2 1125 0 Chloracidobacterium thermophilum 458033 0 1117 1 species Acidobacteriia 204432 1 78 12289 0 class 17 Acidobacteriales 204433 1 150 9525 0 order 12 0 9375 11 family Acidobacteriaceae 126 1 204434 10 1 658061 Candidatus Koribacter 2 genus 0 1517 1 species 0 1507 658062 Candidatus Koribacter versatilis genus 3 3026 0 392733 1 12 Terriglobus 392734 Terriglobus roseus 1 species 0 1803 1 species 0 1211 870903 Terriglobus saanensis 16 1 33973 Acidobacterium 2 genus 0 1644 species 1 1628 0 33075 Acidobacterium capsulatum 3 genus 0 3062 56 940557 1 Granulicella 1490 0 species 1 Granulicella mallensis 940614 1 species 0 1516 940615 Granulicella tundricola 0 2686 4 order Solibacterales 112 332160 1 Solibacteraceae 28 1 332161 0 2574 3 family Candidatus Solibacter 22 1 332162 0 2546 2 genus species 1 2524 0 332163 Candidatus Solibacter usitatus 1 1224 1275 Proteobacteria phylum 2022 2239697 0 1807140 3175 0 class 6 3175 0 order 6 Acidithiobacillales 1 225057 55 5 family 0 3120 34 1 225058 Acidithiobacillaceae Acidithiobacillus 37 119977 1 0 3086 4 genus 1023 0 species 1 Acidithiobacillus ferrooxidans 920 species 1 1161 0 160808 Acidithiobacillus ferrivorans Acidithiobacillus caldus 33059 0 865 1 species 0 578717 559 class Alphaproteobacteria 2163 1 28211 11 1 766 Rickettsiales 53 order 0 9391 0 5276 27 family Rickettsiaceae 3 775 1 1 2115980 1 Candidatus Phycorickettsia 2 genus 0 458 1 species 0 457 2115978 Candidatus Phycorickettsia trachydisci tribe 24 4815 0 33988 genus 1 477 0 69474 1 species 0 477 784 Orientia tsutsugamushi 23 genus 0 4338 742 780 1 Rickettsia 530 0 species group 2 1129742 788 Rickettsia canadensis species 1 205 0 33990 Rickettsia bellii species 1 325 0 0 294 1 no rank 114295 Rickettsia endosymbiont of Bemisia tabaci 337479 0 294 1 species species group 2 454 0 114292 782 Rickettsia prowazekii 1 species 0 183 Rickettsia typhi 785 0 271 1 species 17 species group 0 2318 114277 Rickettsia philipii 1105106 0 82 1 species Rickettsia felis 42862 873 0 species 1 species 1 37 0 35788 Rickettsia africae 1 species 0 29 226665 Rickettsia heilongjiangensis 35790 Rickettsia japonica 1 species 0 48 783 Rickettsia rickettsii species 1 77 0 91 0 species 1 Rickettsia peacockii 47589 58 0 species 1 Rickettsia amblyommatis 33989 33991 Rickettsia montanensis 1 species 0 70 species 1 51 0 33992 Rickettsia rhipicephali 0 171 1 species Rickettsia monacensis 109232 0 246 1 species Rickettsia australis 787 species 1 42 0 781 Rickettsia conorii 0 331 1 species Rickettsia akari 786 25 0 species 1 Rickettsia slovaca 35794 Rickettsia massiliae 35791 57 0 species 1 35792 Rickettsia parkeri 1 species 0 30 942 1 3 Anaplasmataceae family 22 3538 0 31 943 1 Ehrlichia 6 genus 0 1242 0 147 1 no rank 106181 species 1 147 0 391036 Ehrlichia sp. HF 106178 1064 0 species group 4 317 0 species 1 Ehrlichia chaffeensis 945 Ehrlichia muris 35795 191 0 species 1 1 species 0 202 944 Ehrlichia canis 354 0 species 1 Ehrlichia ruminantium 779 Neorickettsia 1 33993 5 550 0 genus 4 325 0 species 1 Neorickettsia helminthoeca 33994 0 126 1 species Neorickettsia risticii 950 Neorickettsia sennetsu 951 94 0 species 1 tribe 8 1282 0 952 1 953 19 Wolbachia genus 8 1282 0 no rank 7 1263 0 2640676 1 species 0 115 77551 Wolbachia endosymbiont of Onchocerca volvulus Wolbachia endosymbiont of Drosophila melanogaster 163164 0 138 1 species 80849 Wolbachia endosymbiont of Brugia malayi species 1 154 0 0 170 1 species Wolbachia endosymbiont of Cimex lectularius 246273 Wolbachia sp. wRi 66084 133 0 species 1 0 135 1 species Wolbachia endosymbiont of Onchocerca ochengi 100901 Wolbachia endosymbiont of Drosophila simulans 77038 0 418 1 species 461 0 genus 3 768 0 109 1 species Anaplasma marginale 770 Anaplasma centrale 769 0 186 1 species species group 1 166 0 106179 948 Anaplasma phagocytophilum species 1 166 0 family 2 165 0 1 1328881 6 Candidatus Midichloriaceae genus 1 159 0 411566 234827 Candidatus Midichloria mitochondrii species 1 159 0 1699067 0 401 1 no rank 0 401 1 species Rickettsiales bacterium Ac37b 1528098 2800060 0 2065 5 order Hyphomonadaceae 39 1 69657 0 2065 5 family genus 1 254 0 2723 1 species 0 254 2724 Hirschia baltica 3 genus 0 1772 41 1 85 Hyphomonas 1059 0 species 1 Hyphomonas neptunium 81032 no rank 1 672 0 2630699 1906738 Hyphomonas sp. Mor2 1 species 0 672 0 756 6 order Holosporales 1 1 1921002 44746 1 family 0 300 204454 no rank 1 300 0 1 species 0 300 86106 endosymbiont of Acanthamoeba sp. UWC8 family 2 193 0 2100208 1509243 1 1 Candidatus Nucleicultrix genus 2 193 0 1509244 Candidatus Nucleicultrix amoebiphila species 1 192 0 family 2 262 0 1777752 2 genus 0 262 1 1 1521255 Candidatus Paracaedibacter 0 261 1 species Candidatus Paracaedibacter acanthamoebae 91604 2800059 2 order 0 1210 1210 0 family 2 2800061 1210 0 genus 2 Maricaulis 1 74317 52 1158 0 species 1 Maricaulis maris 74318 1 54526 1 Pelagibacterales order 9 1540 0 2 genus 0 348 1 1 2045213 Candidatus Fonsibacter species 1 347 0 1925548 Candidatus Fonsibacter ubiquis Pelagibacteraceae 1655514 1 6 1191 0 family 6 1655516 0 630 2 no rank 1 species 0 402 859653 alpha proteobacterium HIMB5 alpha proteobacterium HIMB59 744985 228 0 species 1 555 0 genus 3 Candidatus Pelagibacter 1 198251 10 0 358 1 species Candidatus Pelagibacter ubique 198252 2647897 no rank 1 187 0 0 187 1 species Candidatus Pelagibacter sp. IMCC9063 1002672 92 order 0 103013 617 204455 1 Rhodobacterales 1888 31989 1 Rhodobacteraceae 91 family 0 102396 genus 2 2343 0 58842 1 6 Sagittula 2624628 no rank 1 2337 0 2337 0 species 1 Sagittula sp. P11 2009329 5844 0 genus 4 Rhodovulum 34008 1 62 0 2999 2 no rank 2631432 1564506 Rhodovulum sp. P5 species 1 1343 0 1656 0 species 1 Rhodovulum sp. MB263 308754 35806 Rhodovulum sulfidophilum species 1 2783 0 0 1988 2 genus Defluviimonas 6 1097466 1 1 species 0 1982 1335048 Defluviimonas alba 1 genus 0 1197 1649279 0 1197 1 species Ruegeria mobilis 379347 Confluentimicrobium 1609958 1 17 1786 0 genus 2 no rank 1 1769 0 2643318 1609966 Confluentimicrobium sp. EMB200-NS6 1 species 0 1769 2 genus 0 1300 10 1 285107 Thioclava species 1 1290 0 1915078 Thioclava nitratireducens 302485 1 115 Phaeobacter genus 5 8563 0 Phaeobacter gallaeciensis 60890 2402 0 species 1 221822 Phaeobacter inhibens 1 species 0 3107 1844006 Phaeobacter porticola species 1 716 0 0 2223 1 species Phaeobacter piscinae 1580596 Rhodobaca 2 1 119541 0 891 2 genus Rhodobaca barguzinensis 441209 889 0 species 1 0 1512 1 genus 2211641 1 species 0 1512 245188 Loktanella vestfoldensis 0 10577 5 genus Rhodobacter 162 1 1060 1 species 0 5321 1063 Rhodobacter sphaeroides 0 3081 2 no rank 196779 Rhodobacter sp. LPB0142 1850250 1268 0 species 1 species 1 1813 0 2033869 Rhodobacter sp. CZR27 2013 0 species 1 Rhodobacter capsulatus 1061 Antarctobacter 74032 1 1 1482 0 genus 2 0 1481 1 species Antarctobacter heliothermus 74033 Ketogulonicigenium 7 1 92944 0 2551 3 genus 92945 Ketogulonicigenium vulgare species 1 1238 0 1 species 0 1306 92947 Ketogulonicigenium robustum 478070 1 63 Labrenzia genus 4 4536 0 2925 0 no rank 2 2648686 1674922 Labrenzia sp. CP4 species 1 1578 0 2021862 Labrenzia sp. VG12 1 species 0 1347 0 1548 1 species Labrenzia aggregata 187304 Ruegeria 1 97050 11 2938 0 genus 3 Ruegeria pomeroyi 89184 0 1779 1 species 0 1148 1 no rank 2625375 292414 Ruegeria sp. TM1040 1 species 0 1148 no rank 2 2225 0 58840 species 1 1527 0 2033435 Rhodobacteraceae bacterium QY30 species 1 698 0 1904441 Rhodobacteraceae bacterium 2 genus 0 2300 9 1 360528 Pelagibaca 1 species 0 2291 1250539 Pelagibaca abyssi 1 genus 0 21 436357 Thalassococcus 2 genus 0 858 1 1759396 1 Marivivens 1 no rank 0 857 2622455 857 0 species 1 Marivivens sp. JLT3646 1920883 191028 1 7 Leisingera genus 2 1636 0 0 1629 1 species Leisingera methylohalidivorans 133924 1 1579315 10 Halocynthiibacter genus 2 472 0 Halocynthiibacter arcticus 1579316 0 462 1 species 9 genus 0 16614 324 1 265 Paracoccus 1336 0 no rank 1 246570 1 species 0 1336 1529068 Paracoccus sp. BM15 Paracoccus sp. CBA4604 2065379 0 1706 1 species 266 Paracoccus denitrificans 1 species 0 2713 1 species 0 1523 34003 Paracoccus aminophilus 34004 Paracoccus aminovorans species 1 2110 0 Paracoccus zhejiangensis 1077935 0 1995 1 species species 1 1917 0 1945662 Paracoccus contaminans Paracoccus yeei 147645 0 2990 1 species genus 2 1436 0 1 309512 7 Dinoroseobacter species 1 1429 0 215813 Dinoroseobacter shibae 14 0 genus 1 Loktanella 245186 3 genus 0 1596 15 1 2433 Roseobacter 818 0 species 1 Roseobacter litoralis 42443 763 0 species 1 Roseobacter denitrificans 2434 Celeribacter 875170 1 42 5375 0 genus 5 Celeribacter ethanolicus 1758178 1380 0 species 1 1 species 0 1307 1411902 Celeribacter manganoxidans 1397108 Celeribacter marinus 1 species 0 543 Celeribacter indicus 1208324 2103 0 species 1 0 424 1 genus 1284657 0 424 1 species Planktomarina temperata 1284658 Octadecabacter 53945 1 18 1855 0 genus 4 1 species 0 590 1217908 Octadecabacter antarcticus 0 712 1 species Octadecabacter arcticus 53946 Octadecabacter temperatus 1458307 535 0 species 1 0 1363 2 genus Roseibacterium 4 1 159345 0 1359 1 species Roseibacterium elongatum 159346 2 genus 0 966 9 74030 1 Roseovarius 215743 Roseovarius mucosus species 1 957 0 genus 2 2827 0 227873 1 30 Pannonibacter 1 species 0 2797 121719 Pannonibacter phragmitetus 1057 0 genus 1 299261 species 1 1057 0 299262 Tateyamaria omphalii 2 genus 0 2200 26 367771 1 Marinovum 1 species 0 2174 42444 Marinovum algicola 3 genus 0 3229 17 1 60136 Sulfitobacter species 1 1387 0 1402135 Sulfitobacter pseudonitzschiae 196795 no rank 1 1825 0 1917485 Sulfitobacter sp. AM1-D1 1 species 0 1825 13 1 188905 Jannaschia 2 genus 0 1238 2645469 1225 0 no rank 1 Jannaschia sp. CCS1 290400 1225 0 species 1 2 genus 0 5294 263377 no rank 1 2536 0 2640570 species 1 2536 0 1792508 Yangia sp. CCB-MM3 0 2758 1 species Thiobacimonas profunda 1229727 Caulobacterales 1 204458 254 26905 0 order 20 442 76892 1 Caulobacteraceae 19 family 0 26651 0 1363 2 genus Asticcacaulis 49 1 76890 1 species 0 1314 78587 Asticcacaulis excentricus 9015 0 genus 7 Brevundimonas 41275 1 267 588932 Brevundimonas naejangsanensis species 1 1463 0 2622653 no rank 3 4484 0 1938605 Brevundimonas sp. LM2 species 1 1656 0 Brevundimonas sp. GW460-12-10-14-LB2 1827469 0 1342 1 species Brevundimonas sp. DS20 1532555 0 1486 1 species Brevundimonas vesicularis 41276 1228 0 species 1 Brevundimonas subvibrioides 74313 0 1573 1 species Phenylobacterium 34 1 20 0 2369 2 genus 284016 Phenylobacterium zucineum species 1 2335 0 genus 6 12733 0 75 1 230 Caulobacter 69666 Caulobacter mirabilis 1 species 0 2377 2648921 0 2833 1 no rank Caulobacter sp. K31 366602 2833 0 species 1 Caulobacter segnis 88688 1987 0 species 1 3909 0 species 1 Caulobacter vibrioides 155892 1 species 0 1397 69395 Caulobacter henricii 81440 1 no rank 0 729 1759059 Caulobacteraceae bacterium OTSz_A_272 1 species 0 729 order 65 85061 0 204441 1 1044 Rhodospirillales Rhodospirillaceae 865 41295 1 0 52303 29 family 0 1283 2 genus Pararhodospirillum 3 1612157 1 1084 Pararhodospirillum photometricum 1 species 0 1280 1015 0 genus 2 Magnetospira 1182780 1 13 1 no rank 0 1002 2685734 0 1002 1 species Magnetospira sp. QH-2 1288970 genus 2 2980 0 1 171436 30 Tistrella Tistrella mobilis 171437 2950 0 species 1 1 genus 0 270 1263978 1 species 0 270 1263979 Candidatus Endolissoclinum faulkneri 0 4536 3 genus Rhodospirillum 56 1 1081 34018 Rhodospirillum centenum 1 species 0 2856 Rhodospirillum rubrum 1085 0 1624 1 species Azospirillum 1 191 394 20011 0 genus 5 193 Azospirillum lipoferum 1 species 0 7037 species 1 1956 0 1226968 Azospirillum humicireducens 192 Azospirillum brasilense 1 species 0 6502 528244 Azospirillum thiophilum species 1 4122 0 1 genus 0 559 1804663 0 559 1 species Haematospirillum jordaniae 1549855 2 genus 0 2243 17 1 1543704 Niveispirillum Niveispirillum cyanobacteriorum 1612173 0 2226 1 species 288 1 13134 Magnetospirillum 5 genus 0 12312 2617991 no rank 2 5652 0 2780 0 species 1 Magnetospirillum sp. XM-1 1663591 2872 0 species 1 Magnetospirillum sp. ME-1 1639348 55518 Magnetospirillum gryphiswaldense species 1 3116 0 84159 Magnetospirillum magneticum species 1 3256 0 2119 0 genus 3 Thalassospira 1 168934 21 species 1 987 0 220697 Thalassospira xiamenensis 1111 0 species 1 Thalassospira sp. CSC3H3 2048283 4110 0 genus 2 Nitrospirillum 1543705 1 26 0 4084 1 species Nitrospirillum amazonense 28077 0 31714 35 family Acetobacteraceae 442 433 1 7 91914 1 Asaia 2 genus 0 815 808 0 species 1 Asaia bogorensis 91915 2 genus 0 2378 73 1 364409 Granulibacter species 1 2305 0 364410 Granulibacter bethesdensis 15 1 320496 Neoasaia 2 genus 0 1034 1019 0 species 1 Neoasaia chiangmaiensis 320497 genus 2 899 0 1602345 1 1 Parasaccharibacter 1510841 Parasaccharibacter apium species 1 898 0 0 5584 5 genus Komagataeibacter 86 1 1434011 33995 Komagataeibacter europaeus species 1 999 0 Komagataeibacter medellinensis 1177712 834 0 species 1 Komagataeibacter xylinus 28448 0 2572 1 species 1 species 0 1093 265960 Komagataeibacter nataicola genus 2 992 0 153497 1 18 Kozakia Kozakia baliensis 153496 974 0 species 1 Gluconobacter 441 1 20 2687 0 genus 3 318683 Gluconobacter albidus 1 species 0 924 0 1743 1 species Gluconobacter oxydans 442 genus 8 6560 0 434 1 71 Acetobacter subgenus 1 897 0 151157 435 Acetobacter aceti 1 species 0 897 2189 0 species 1 Acetobacter pasteurianus 438 Acetobacter pomorum 65959 560 0 species 1 1076596 Acetobacter persici 1 species 0 972 1633874 Acetobacter oryzifermentans species 1 427 0 722 0 species 1 Acetobacter senegalensis 446692 104102 Acetobacter tropicalis species 1 722 0 0 1900 2 genus Gluconacetobacter 14 89583 1 1 species 0 1886 33996 Gluconacetobacter diazotrophicus 2836 0 genus 3 Acidiphilium 1 522 120 0 1358 1 species Acidiphilium cryptum 524 62140 Acidiphilium multivorum species 1 1358 0 5587 0 genus 3 Roseomonas 1 125216 151 257708 Roseomonas gilardii 1 species 0 2444 0 2992 1 no rank 2617492 2992 0 species 1 Roseomonas sp. FDAARGOS_362 2018065 356 1 2919 Rhizobiales order 210 252250 0 Methylobacteriaceae 239 119045 1 0 31416 15 family 981 1 407 Methylobacterium 9 genus 0 17913 334852 Methylobacterium oryzae species 1 1852 0 1 species 0 2202 31998 Methylobacterium radiotolerans 0 1840 1 species Methylobacterium phyllosphaerae 418223 270351 Methylobacterium aquaticum 1 species 0 2587 no rank 3 6445 0 2615210 1 species 0 2060 1479019 Methylobacterium sp. C1 species 1 1785 0 925818 Methylobacterium sp. AMS5 2600 0 species 1 Methylobacterium sp. 4-46 426117 Methylobacterium nodulans 114616 2006 0 species 1 2282523 11093 0 genus 3 1 species 0 5946 408 Methylobacterium extorquens 0 3481 1 species Methylobacterium populi 223967 29429 Methylobacterium zatmanii 1 species 0 1666 0 2171 2 genus Microvirga 38 186650 1 1882682 Microvirga ossetica 1 species 0 2133 118882 1 65 Brucellaceae family 20 9552 0 5 genus 0 5084 44 1 528 Ochrobactrum 0 1258 1 species Ochrobactrum sp. A44 271865 species 1 1302 0 529 Ochrobactrum anthropi 419475 Ochrobactrum pseudogrignonense 1 species 0 1200 Ochrobactrum pituitosum 571256 1280 0 species 1 Brucella 234 1 1408 4403 0 genus 14 Brucella suis 29461 140 0 species 1 981386 Brucella vulpis 1 species 0 301 species 1 268 0 36855 Brucella canis species 1 166 0 29459 Brucella melitensis 2632610 4 no rank 0 1261 species 1 505 0 1885919 Brucella sp. 141012304 1149952 Brucella sp. 09RB8471 species 1 401 0 43 0 species 1 Brucella sp. 2002734562 1891098 species 1 312 0 1844051 Brucella sp. 09RB8910 species 1 87 0 444163 Brucella microti 1 species 0 81 236 Brucella ovis 0 296 1 species Brucella ceti 120577 120576 Brucella pinnipedialis species 1 293 0 0 102 1 species Brucella abortus 235 Xanthobacteraceae 335928 1 101 7820 0 family 7 2583 0 genus 2 Xanthobacter 279 1 54 280 Xanthobacter autotrophicus 1 species 0 2529 Starkeya 152053 1 30 2267 0 genus 2 2237 0 species 1 Starkeya novella 921 0 2869 2 genus Azorhizobium 56 1 6 2813 0 species 1 Azorhizobium caulinodans 7 Beijerinckiaceae 45404 1 5 1973 0 family 5 Methylocella 120652 1 12 1216 0 genus 2 Methylocella silvestris 199596 0 1204 1 species genus 2 752 0 1 532 8 Beijerinckia 1 species 0 744 533 Beijerinckia indica 0 4138 6 family Methylocystaceae 52 31993 1 2 genus 0 1708 57 1 425 Methylosinus 1 species 0 1651 426 Methylosinus trichosporium 62 133 1 Methylocystis 3 genus 0 2378 2625913 no rank 1 1079 0 1 species 0 1079 187303 Methylocystis sp. SC2 655015 Methylocystis bryophila 1 species 0 1237 82025 0 family 53 Rhizobiaceae 1 82115 993 genus 2 2891 0 1 323620 26 Shinella 2643062 2865 0 no rank 1 species 1 2865 0 879274 Shinella sp. HZN7 1 34019 26 Liberibacter genus 6 1097 0 Candidatus Liberibacter solanacearum 556287 248 0 species 1 Candidatus Liberibacter africanus 34020 0 176 1 species 0 207 1 species Liberibacter crescens 1273132 309868 Candidatus Liberibacter americanus species 1 169 0 species 1 271 0 34021 Candidatus Liberibacter asiaticus 34 no rank 0 59041 227290 0 14365 7 genus Agrobacterium 248 1 357 species group 2 8020 0 1183400 Agrobacterium tumefaciens 358 0 6476 1 species Agrobacterium fabrum 1176649 1544 0 species 1 Agrobacterium vitis 373 1610 0 species 1 2 no rank 0 2982 2632611 species 1 1722 0 861208 Agrobacterium sp. H13-3 1260 0 species 1 Agrobacterium sp. RAC06 1842536 1 species 0 1505 359 Agrobacterium rhizogenes Rhizobium 2715 1 379 0 41751 25 genus 1 species 0 9066 384 Rhizobium leguminosarum species 1 5068 0 29449 Rhizobium etli 18122 0 no rank 19 2613769 1858 0 species 1 Rhizobium sp. ACO-34A 1571470 0 1 1 species Rhizobium sp. N871 1703968 1376 0 species 1 Rhizobium sp. CIAT894 2020312 1482 0 species 1 Rhizobium sp. NXC24 2048897 0 986 1 species Rhizobium sp. IE4771 1301032 1914541 Rhizobium sp. Y9 species 1 1570 0 Rhizobium sp. 10195 2028343 0 1726 1 species Rhizobium sp. Kim5 2020311 1066 0 species 1 1869170 Rhizobium sp. S41 species 1 1442 0 1703962 Rhizobium sp. N1341 species 1 7 0 320 0 species 1 Rhizobium sp. N1314 1703961 1 species 0 1273 1125847 Rhizobium sp. NT-26 1 species 0 1541 424182 Rhizobium sp. IRBG74 Rhizobium sp. N324 1703969 0 1664 1 species 0 1081 1 species Rhizobium sp. NXC14 1981173 5 0 species 1 Rhizobium sp. N113 1703960 species 1 320 0 1703966 Rhizobium sp. N731 1 species 0 2 1703967 Rhizobium sp. N741 2020313 Rhizobium sp. TAL182 species 1 402 0 56730 Rhizobium gallicum species 1 2184 0 0 1416 1 species Rhizobium tropici 398 Rhizobium phaseoli 396 3180 0 species 1 0 2925 2 genus Neorhizobium 8 1525371 1 species 1 2917 0 399 Neorhizobium galegae 227292 10 no rank 0 18003 276 1 28105 Sinorhizobium 7 genus 0 14431 2613772 3571 0 no rank 2 0 2285 1 species Sinorhizobium sp. RAC02 1842534 794846 Sinorhizobium sp. CCBAU 05631 species 1 1286 0 1 species 0 3310 382 Sinorhizobium meliloti 1 species 0 1364 110321 Sinorhizobium medicae Sinorhizobium americanum 194963 2050 0 species 1 1 species group 0 3860 663276 380 Sinorhizobium fredii species 1 3860 0 0 3572 3 genus Ensifer 26 1 106591 0 1623 1 species Ensifer sojae 716925 106592 Ensifer adhaerens species 1 1923 0 Hyphomicrobiaceae 1 45401 121 16569 0 family 19 2 genus 0 1054 3 1082930 1 Pelagibacterium Pelagibacterium halotolerans 531813 1051 0 species 1 4455 0 genus 4 Hyphomicrobium 1 81 64 2619925 0 1353 1 no rank Hyphomicrobium sp. MC1 717785 0 1353 1 species species 1 1360 0 53399 Hyphomicrobium denitrificans 1 species 0 1678 1427356 Hyphomicrobium nitrativorans 0 2054 2 genus Blastochloris 47 1 59282 species 1 2007 0 1079 Blastochloris viridis 0 1217 2 genus Rhodomicrobium 7 1 1068 1069 Rhodomicrobium vannielii species 1 1210 0 8 1 119044 Filomicrobium 2 genus 0 437 0 429 1 species Candidatus Filomicrobium marinum 1608628 genus 4 5336 0 1 46913 131 Devosia no rank 3 5205 0 196773 1643450 Devosia sp. H5989 species 1 2057 0 987 0 species 1 Devosia sp. I507 2083786 0 2161 1 species Devosia sp. A16 1736675 29407 1 50 Rhodoplanes genus 2 1895 0 1845 0 no rank 1 2619116 674703 Rhodoplanes sp. Z2-YC6860 species 1 1845 0 4244 0 family 4 Chelatococcaceae 1 2036754 20 3 genus 0 4224 131 1 28209 Chelatococcus species 1 1681 0 444444 Chelatococcus daeguensis 2412 0 no rank 1 2638111 1702325 Chelatococcus sp. CO-6 species 1 2412 0 772 1 22 Bartonellaceae family 18 5646 0 17 genus 0 5624 101 1 773 Bartonella 2645622 no rank 6 1944 0 1933906 Bartonella sp. JB15 species 1 296 0 Bartonella sp. WD16.2 1933904 0 291 1 species 0 353 1 species Bartonella sp. A1379B 1933910 385 0 species 1 Bartonella sp. 1-1C 515256 Bartonella sp. Raccoon60 1933912 0 327 1 species 1 species 0 292 1933907 Bartonella sp. JB63 56426 Bartonella clarridgeiae species 1 475 0 1686310 Bartonella apis 1 species 0 1240 species 1 188 0 388640 Bartonella australis 774 Bartonella bacilliformis 1 species 0 322 0 194 1 species Bartonella quintana 803 Bartonella henselae 38323 0 248 1 species 1318743 Bartonella ancashensis 1 species 0 240 85701 Bartonella tribocorum 1 species 0 274 species 1 226 0 33045 Bartonella grahamii 172 0 species 1 Bartonella vinsonii 33047 19 1 255475 Aurantimonadaceae 7 family 0 7660 4 genus 0 5754 157 1 293088 Martelella 1486262 Martelella endophytica species 1 1970 0 1 no rank 0 1905 2629616 species 1 1905 0 686597 Martelella sp. AD-3 293089 Martelella mediterranea species 1 1722 0 Aureimonas 1 414371 30 1887 0 genus 2 1857 0 no rank 1 2615206 0 1857 1 species Aureimonas sp. AU20 1349819 Bradyrhizobiaceae 41294 1 633 47824 0 family 26 genus 11 23642 0 374 1 638 Bradyrhizobium 1355477 Bradyrhizobium diazoefficiens 1 species 0 3554 Bradyrhizobium icense 1274631 1453 0 species 1 1 species 0 3586 375 Bradyrhizobium japonicum 2046 0 species 1 Bradyrhizobium oligotrophicum 44255 12365 0 no rank 6 2631580 species 1 2045 0 115808 Bradyrhizobium sp. ORS 285 2168 0 species 1 Bradyrhizobium sp. SK17 2057741 Bradyrhizobium sp. ORS 278 114615 0 1887 1 species 288000 Bradyrhizobium sp. BTAi1 species 1 2202 0 1 species 0 1924 376 Bradyrhizobium sp. 1223566 Bradyrhizobium sp. CCGE-LA001 species 1 2139 0 0 1700 3 genus Nitrobacter 13 911 1 Nitrobacter winogradskyi 913 0 721 1 species species 1 966 0 912 Nitrobacter hamburgensis Variibacter 1 1649510 24 901 0 genus 2 1333996 Variibacter gotjawalensis 1 species 0 877 1 40136 23 Oligotropha genus 2 1073 0 Oligotropha carboxidovorans 40137 1050 0 species 1 Rhodopseudomonas 109 1 1073 0 11168 2 genus species 1 11059 0 1076 Rhodopseudomonas palustris 1 85413 141 Bosea genus 5 8707 0 Bosea vaviloviae 1526658 0 2333 1 species 2653178 3 no rank 0 6233 2236 0 species 1 Bosea sp. AS-1 2015316 2065 0 species 1 Bosea sp. RAC05 1842539 1932 0 species 1 Bosea sp. PAMC 26642 1792307 69277 1 186 Phyllobacteriaceae family 20 24656 0 476 1 68287 Mesorhizobium 9 genus 0 17424 39645 Mesorhizobium ciceri species 1 2822 0 325217 0 2160 1 no rank 1 species 0 2160 278153 Mesorhizobium sp. WSM1497 species 1 1626 0 536018 Mesorhizobium australicum 0 2097 1 species Mesorhizobium amorphae 71433 1 species 0 2198 381 Mesorhizobium loti 1 species 0 1263 1670800 Mesorhizobium sp. B7 Mesorhizobium japonicum 2066070 0 2532 1 species 0 2250 1 species Mesorhizobium opportunistum 593909 0 1220 2 genus Chelativorans 12 1 449972 2643807 no rank 1 1208 0 1208 0 species 1 Chelativorans sp. BNC1 266779 0 1216 2 genus Phyllobacterium 21 1 28100 Phyllobacterium zundukense 1867719 1195 0 species 1 Hoeflea 1 274591 14 1178 0 genus 2 1164 0 no rank 1 2614931 1620421 Hoeflea sp. IMCC20628 1 species 0 1164 1119 0 genus 2 Nitratireductor 1 245876 53 Nitratireductor basaltis 472175 0 1066 1 species 25 1 31988 Aminobacter 2 genus 0 2313 0 2288 1 species Aminobacter aminovorans 83263 119042 no rank 6 4674 0 Methyloceanibacter 1484898 1 18 1392 0 genus 2 1384459 Methyloceanibacter caenitepidi species 1 1374 0 Hartmannibacter 1572860 1 21 2111 0 genus 2 1 species 0 2090 1482074 Hartmannibacter diazotrophicus Pseudorhodoplanes 1 1734920 77 1171 0 genus 2 1235591 Pseudorhodoplanes sinuspersici species 1 1094 0 1 119043 8 Rhodobiaceae family 3 1134 0 Parvibaculum 1 256616 31 1126 0 genus 2 1095 0 species 1 Parvibaculum lavamentivorans 256618 5 1191478 1 Magnetococcales 4 order 0 853 1 1191479 13 Magnetococcaceae family 3 848 0 Magnetococcus 1 1 162171 0 835 2 genus species 1 834 0 1124597 Magnetococcus marinus 87364 0 order 82 Sphingomonadales 1 204457 642 59 family 0 68848 938 1 41297 Sphingomonadaceae 98 165696 1 Novosphingobium 5 genus 0 6417 Novosphingobium aromaticivorans 48935 1490 0 species 1 0 1432 1 no rank 2644732 702113 Novosphingobium sp. PP1Y 1 species 0 1432 205844 Novosphingobium pentaromativorans 1 species 0 1667 1 species 0 1730 158500 Novosphingobium resinovorum Zymomonas 7 1 541 0 939 2 genus 542 Zymomonas mobilis species 1 932 0 Rhizorhabdus 72 1 1649486 0 1708 2 genus species 1 1636 0 1850238 Rhizorhabdus dicambivorans genus 2 1342 0 1 150203 31 Blastomonas 2626550 no rank 1 1311 0 1842535 Blastomonas sp. RAC04 species 1 1311 0 13687 1 476 Sphingomonas genus 15 22436 0 1549858 Sphingomonas taxi 1 species 0 1889 Sphingomonas wittichii 1 160791 1871 3525 0 species 2 Sphingomonas sp. DC-6 1283312 1654 0 strain 1 196159 8517 0 no rank 6 Sphingomonas sp. Cra20 1327635 1205 0 species 1 1030157 Sphingomonas sp. KC8 1 species 0 1019 1 species 0 1301 1938607 Sphingomonas sp. LM7 1 species 0 1937 745310 Sphingomonas sp. MM-1 0 1556 1 species Sphingomonas sp. LK11 1390395 1961362 Sphingomonas sp. NIC1 species 1 1499 0 Sphingomonas panacis 1560345 0 1525 1 species 1609977 Sphingomonas hengshuiensis 1 species 0 1462 152682 Sphingomonas melonis species 1 1493 0 Sphingomonas koreensis 93064 1520 0 species 1 397260 Sphingomonas sanxanigenens 1 species 0 2029 1 165697 265 Sphingopyxis genus 10 10360 0 2614943 0 3544 4 no rank 1913578 Sphingopyxis sp. LPB0140 1 species 0 280 1357916 Sphingopyxis sp. QXT-31 1 species 0 1175 0 1153 1 species Sphingopyxis sp. MG 1866325 936 0 species 1 Sphingopyxis sp. 113P3 292913 0 847 1 species Sphingopyxis terrae 33052 Sphingopyxis alaskensis 117207 0 1214 1 species Sphingopyxis granuli 267128 1355 0 species 1 1515612 Sphingopyxis fribergensis 1 species 0 966 Sphingopyxis macrogoltabida 33050 2169 0 species 1 1266 0 genus 1 2685927 Sphingomonas sp. JJ-A5 1921510 0 1266 1 species 1 165695 414 Sphingobium genus 15 19647 0 332056 Sphingobium japonicum 1 species 0 1339 1673076 Sphingobium hydrophobicum 1 species 0 1633 8538 0 no rank 6 2611147 0 1416 1 species Sphingobium sp. RAC03 1843368 Sphingobium sp. TKS 1315974 0 1619 1 species Sphingobium sp. SYK-6 627192 0 1675 1 species Sphingobium sp. EP60837 1855519 0 816 1 species Sphingobium sp. YBL2 484429 2041 0 species 1 0 971 1 species Sphingobium sp. MI1205 407020 1467 0 species 1 Sphingobium yanoikuyae 13690 1475 0 species 1 Sphingobium indicum 332055 species 1 1431 0 46429 Sphingobium chlorophenolicum Sphingobium cloacae 120107 0 1476 1 species 846 0 species 1 Sphingobium baderi 1332080 Sphingobium herbicidovorans 76947 0 1028 1 species 1887 0 genus 3 Sphingorhabdus 1434046 1 28 1859 0 no rank 2 2614947 Sphingorhabdus sp. M41 1806885 1033 0 species 1 Sphingorhabdus sp. YGSMI21 2077182 0 826 1 species 0 680 1 genus 2709685 Sphingorhabdus flavimaris 266812 680 0 species 1 1 72173 24 Citromicrobium genus 2 1228 0 0 1204 1 no rank 2630544 species 1 1204 0 1634516 Citromicrobium sp. JL477 family 22 17874 0 1 335929 343 Erythrobacteraceae 126 1 361177 Altererythrobacter 4 genus 0 2614 1279 0 species 1 Altererythrobacter atlanticus 1267766 Altererythrobacter epoxidivorans 361183 840 0 species 1 species 1 369 0 476157 Altererythrobacter ishigakiensis 2800685 1 genus 0 904 543877 Altererythrobacter marensis species 1 904 0 1855416 1696 0 genus 2 Erythrobacter flavus 192812 869 0 species 1 266951 Erythrobacter seohaensis 1 species 0 827 1 1295327 46 Croceicoccus genus 3 2536 0 1 species 0 1525 450378 Croceicoccus marinus Croceicoccus naphthovorans 1348774 965 0 species 1 genus 1 1192 0 2800682 645517 Altererythrobacter namhicola species 1 1192 0 genus 2 1548 0 2800681 0 600 1 species Erythrobacter atlanticus 1648404 948 0 species 1 Erythrobacter gangjinensis 502682 6 no rank 0 5381 2800788 Porphyrobacter 1111 1 117 2573 0 genus 3 2683265 2456 0 no rank 2 0 1105 1 species Porphyrobacter sp. LM 6 1896196 species 1 1351 0 2023229 Porphyrobacter HT-58-2 Erythrobacter 1 1041 115 2808 0 genus 3 0 1027 1 species Porphyrobacter neustonensis 1112 39960 Erythrobacter litoralis species 1 1666 0 0 1660 2 genus 2800686 1982042 Altererythrobacter mangrovi 1 species 0 755 1 species 0 905 692370 Altererythrobacter dongtanensis 255473 3 order 0 330 0 330 3 family Parvularculaceae 3 1 255474 Parvularcula 3 1 208215 0 327 2 genus 0 324 1 species Parvularcula bermudensis 208216 0 5816 7 no rank 82117 Polymorphum 18 991903 1 0 1823 2 genus 991904 Polymorphum gilvum species 1 1805 0 62654 clade 1 463 0 1 genus 0 463 767891 767892 Candidatus Puniceispirillum marinum 1 species 0 463 0 2482 2 genus Phreatobacter 48 1 1632780 Phreatobacter sp. S-12 1868589 2434 0 species 1 genus 2 1048 0 213485 1 7 Micavibrio Micavibrio aeruginosavorus 349221 0 1041 1 species class 6 2010 0 1 580370 7 Zetaproteobacteria order 5 2003 0 1 580371 15 Mariprofundales 580372 1 6 Mariprofundaceae family 4 1988 0 9 377315 1 Mariprofundus 3 genus 0 1982 950 0 species 1 Mariprofundus aestuarium 1921086 species 1 1023 0 1921087 Mariprofundus ferrinatatus Gammaproteobacteria 1 1236 2038 871143 0 class 889 order 71 42405 0 135619 1 594 Oceanospirillales 1404 0 family 6 Kangiellaceae 1920240 1 16 Kangiella 1 261963 36 1388 0 genus 5 0 394 1 species Kangiella sediminilitoris 1144748 0 307 1 species Kangiella profundi 1561924 Kangiella koreensis 261964 0 430 1 species Kangiella geojedonensis 914150 0 221 1 species 3 family 0 482 5 191033 1 Oleiphilaceae 0 477 2 genus Oleiphilus 12 1 141450 1 species 0 465 141451 Oleiphilus messinensis Oceanospirillaceae 49 135620 1 0 4325 13 family 9 1 48075 Marinobacterium 2 genus 0 1693 species 1 1684 0 1821621 Marinobacterium aestuarii genus 2 515 0 188907 1 1 Oleispira 0 514 1 species Oleispira antarctica 188908 187492 1 3 Thalassolituus genus 2 323 0 187493 Thalassolituus oleivorans species 1 320 0 0 632 2 genus Bacterioplanes 10 1 1537406 622 0 species 1 Bacterioplanes sanyensis 1249553 genus 4 1113 0 1 28253 17 Marinomonas 119864 Marinomonas mediterranea species 1 371 0 1 no rank 0 391 196814 400668 Marinomonas sp. MWYL1 species 1 391 0 Marinomonas posidonica 936476 334 0 species 1 1 224379 8 Hahellaceae family 3 1182 0 0 1174 2 genus Hahella 7 1 158481 species 1 1167 0 158327 Hahella chejuensis 1379 0 family 5 Saccharospirillaceae 255527 1 13 Gynuella 8 1445504 1 0 832 2 genus Gynuella sunshinyii 1445505 0 824 1 species 0 534 2 genus Reinekea 3 230494 1 1336806 Reinekea forsetii species 1 531 0 Alcanivoracaceae 1 224372 88 6925 0 family 9 genus 6 5610 0 1 59753 146 Alcanivorax species 1 1640 0 1306787 Alcanivorax pacificus 2638842 0 522 1 no rank Alcanivorax sp. NBRC 101098 1113728 0 522 1 species Alcanivorax xenomutans 1094342 0 1387 1 species Alcanivorax dieselolei 285091 1433 0 species 1 59754 Alcanivorax borkumensis 1 species 0 482 2025617 1 19 Ketobacter genus 2 1227 0 1208 0 species 1 Ketobacter alkanivorans 1917421 Halomonadaceae 1 28256 432 26114 0 family 31 genus 2 1725 0 1 204286 23 Cobetia Cobetia marina 28258 0 1702 1 species 1 404432 29 Salinicola genus 2 1661 0 1771309 Salinicola tamaricis 1 species 0 1632 genus 15 16946 0 2745 1 255 Halomonas species 1 1308 0 115561 Halomonas hydrothermalis 0 2111 1 species Halomonas aestuarii 1897729 Halomonas huangheensis 1178482 1065 0 species 1 213554 Halomonas campaniensis 1 species 0 598 no rank 8 7569 0 2609666 1962264 Halomonas sp. 'Soap Lake #7' species 1 574 0 1971364 Halomonas sp. GT 1 species 0 690 1 species 0 708 1504981 Halomonas sp. KO116 2046 0 species 1 Halomonas sp. 1513 1883416 Halomonas sp. R57-5 1610576 1097 0 species 1 0 574 1 species Halomonas sp. 'Soap Lake #6' 1949203 2136172 Halomonas sp. SF2003 species 1 1529 0 Halomonas sp. GFAJ-1 1118153 351 0 species 1 Halomonas chromatireducens 507626 0 1554 1 species 475662 Halomonas beimenensis species 1 2486 0 504090 1 40 Kushneria genus 3 2388 0 Kushneria marisflavi 157779 0 1123 1 species Kushneria konosiri 698828 0 1225 1 species 114403 0 225 4 no rank genus 1 6 0 114185 0 6 1 species Candidatus Carsonella ruddii 114186 1495768 genus 1 122 0 122 0 species 1 Candidatus Evansia muelleri 1495769 2 235572 1 Candidatus Portiera 2 genus 0 97 1 species 0 95 91844 Candidatus Portiera aleyrodidarum Chromohalobacter 1 42054 5 1275 0 genus 2 species 1 1270 0 158080 Chromohalobacter salexigens Halotalea 34 376488 1 0 1462 2 genus species 1 1428 0 376489 Halotalea alkalilenta 35 order 0 11023 26 1 72273 Thiotrichales Piscirickettsiaceae 135616 1 52 3349 0 family 15 1 28884 12 Hydrogenovibrio genus 2 485 0 473 0 species 1 Hydrogenovibrio crunogenus 39765 0 880 4 genus Cycloclasticus 4 1 34067 2621467 0 538 2 no rank 0 242 1 species Cycloclasticus sp. P1 385025 728003 Cycloclasticus sp. PY97N 1 species 0 296 1 species 0 338 1329899 Cycloclasticus zancles 634 0 genus 2 Piscirickettsia 1 1237 1 1238 Piscirickettsia salmonis species 1 633 0 3 genus 0 791 4 1 40222 Methylophaga 0 303 1 species Methylophaga frappieri 754477 754476 Methylophaga nitratireducenticrescens 1 species 0 484 0 507 3 genus Thiomicrospira 4 1 933 92245 Thiomicrospira aerophila species 1 309 0 147268 Thiomicrospira cyclica species 1 194 0 1 135617 1 Thiotrichaceae family 5 739 0 426 0 genus 2 Beggiatoa 1 1021 1 425 0 species 1 Beggiatoa leptomitoformis 288004 5 1 40751 Thioploca 2 genus 0 312 species 1 307 0 40754 Thioploca ingrica 14 family 0 6909 13 34064 1 Francisellaceae 0 268 1 genus 1869285 0 268 1 species Allofrancisella guangzhouensis 594679 56 1 262 Francisella 12 genus 0 6628 752 0 no rank 2 2610885 475375 Francisella sp. MA067296 1 species 0 261 1547445 Francisella sp. FSC1006 1 species 0 491 Francisella philomiragia 28110 1274 0 species 1 954 Francisella persica 1 species 0 425 573570 Francisella sp. TX077310 1 species 0 483 species 1 386 0 622488 Francisella hispaniensis species 1 719 0 657445 Francisella noatunensis 1542390 Francisella sp. CA97-1460 species 1 585 0 species 1 302 0 549298 Francisella halioticida species 1 409 0 573569 Francisella sp. TX077308 species 1 1237 0 263 Francisella tularensis order 4 1007 0 1240482 family 4 1007 0 1240483 1 1 Orbaceae 1335631 433 0 genus 1 0 433 1 species Frischella perrara 1267021 573 0 genus 2 Gilliamella 1 1193503 2 1196095 Gilliamella apicola species 1 571 0 3 order 0 264 135615 0 264 3 family Cardiobacteriaceae 1 1 868 1 869 1 Dichelobacter genus 2 263 0 species 1 262 0 870 Dichelobacter nodosus Methylococcales 135618 1 66 7986 0 order 13 403 1 123 Methylococcaceae family 12 7920 0 Methylomonas 91 416 1 0 4899 5 genus 1 species 0 1163 702114 Methylomonas koyamae species 1 1084 0 1538553 Methylomonas denitrificans 1 no rank 0 1488 2608980 1488 0 species 1 Methylomonas sp. DH-1 1727196 species 1 1073 0 421 Methylomonas methanica 2 1 762296 Methylovulum 2 genus 0 683 1704499 Methylovulum psychrotolerans species 1 681 0 genus 2 1466 0 1 413 27 Methylococcus 414 Methylococcus capsulatus species 1 1439 0 0 749 2 genus Methylomicrobium 1 1 39773 0 748 1 species Methylomicrobium alcaliphilum 271065 order 29 52376 0 1 135624 312 Aeromonadales 386 1 84642 Aeromonadaceae 28 family 0 52064 0 3340 2 genus Zobellella 40 1 347533 347534 Zobellella denitrificans species 1 3300 0 1 225143 4 Oceanisphaera genus 3 867 0 species 1 517 0 1416627 Oceanisphaera profunda 1903694 Oceanisphaera sp. AMac2203 species 1 346 0 2 genus 0 2244 11 1 129577 Oceanimonas 0 2233 1 no rank 2636315 Oceanimonas sp. GK1 511062 0 2233 1 species Tolumonas 21 1 43947 0 1044 2 genus species 1 1023 0 43948 Tolumonas auensis 2983 642 1 Aeromonas 18 genus 0 44183 648 Aeromonas caviae 1 species 0 1489 12519 0 no rank 8 257493 1 species 0 1644 1758179 Aeromonas sp. ASNIH5 1 species 0 1975 2033032 Aeromonas sp. CA23 1920107 Aeromonas sp. ASNIH7 1 species 0 1479 Aeromonas sp. ASNIH4 1636609 1939 0 species 1 2033033 Aeromonas sp. CU5 species 1 1391 0 Aeromonas sp. ASNIH2 1636607 0 1284 1 species Aeromonas sp. ASNIH3 1636608 0 1472 1 species Aeromonas sp. ASNIH1 1636606 0 1335 1 species 196024 Aeromonas dhakensis 1 species 0 2029 Aeromonas media 651 1696 0 species 1 654 Aeromonas veronii species 1 4618 0 species 1 1837 0 558964 Aeromonas aquatica 1962 0 species 1 Aeromonas schubertii 652 Aeromonas hydrophila 644 0 9696 1 species 3167 0 species 1 Aeromonas salmonicida 645 species 1 2187 0 948519 Aeromonas rivipollensis 106 order 0 47917 185 1 135622 Alteromonadales family 25 9611 0 267888 1 18 Pseudoalteromonadaceae 0 9593 24 genus Pseudoalteromonas 229 53246 1 381 0 species 1 Pseudoalteromonas phenolica 161398 314281 Pseudoalteromonas tunicata 1 species 0 367 0 282 1 species Pseudoalteromonas haloplanktis 228 0 381 1 species Pseudoalteromonas nigrifaciens 28109 1348114 Pseudoalteromonas piratica 1 species 0 355 0 315 1 species Pseudoalteromonas piscicida 43662 43658 Pseudoalteromonas rubra 1 species 0 530 1 species 0 567 298657 Pseudoalteromonas spongiae Pseudoalteromonas espejiana 28107 0 556 1 species Pseudoalteromonas aliena 247523 414 0 species 1 species 1 428 0 43657 Pseudoalteromonas luteoviolacea 322 0 species 1 Pseudoalteromonas translucida 166935 176102 Pseudoalteromonas agarivorans species 1 273 0 no rank 5 2067 0 194690 species 1 454 0 1761891 Pseudoalteromonas sp. 13-15 310 0 species 1 Pseudoalteromonas sp. SM9913 234831 283699 Pseudoalteromonas sp. Bsw20308 species 1 510 0 306 0 species 1 Pseudoalteromonas sp. NC201 1514074 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1720343 0 487 1 species Pseudoalteromonas issachenkonii 152297 308 0 species 1 1 species 0 233 267375 Pseudoalteromonas marina Pseudoalteromonas atlantica 288 887 0 species 1 species 1 354 0 394751 Pseudoalteromonas arctica Pseudoalteromonas tetraodonis 43659 0 344 1 species Alteromonadaceae 72275 1 99 18093 0 family 30 261825 1 1 Agarivorans genus 2 638 0 0 637 1 species Agarivorans gilvus 680279 Alteromonas 88 226 1 0 5102 10 genus 392 0 species 1 Alteromonas australica 589873 species 1 1180 0 28108 Alteromonas macleodii species 1 748 0 233316 Alteromonas stellipolaris Alteromonas addita 287094 589 0 species 1 879 0 species 1 Alteromonas mediterranea 314275 0 976 3 no rank 2614992 1777491 Alteromonas sp. Mac1 species 1 512 0 Alteromonas sp. MB-3u-76 2058133 232 0 species 1 1917158 Alteromonas sp. RW2A1 species 1 232 0 Alteromonas naphthalenivorans 715451 250 0 species 1 0 560 2 genus Paraglaciecola 3 1621534 1 326544 Paraglaciecola psychrophila 1 species 0 557 2 genus 0 1246 5 1751872 1 Lacimicrobium 1526571 Lacimicrobium alkaliphilum 1 species 0 1241 0 850 3 genus Glaciecola 1 1 89404 0 384 1 species Glaciecola nitratireducens 300231 no rank 1 465 0 2618684 983545 Glaciecola sp. 4H-3-7+YE-5 1 species 0 465 53 2742 1 Marinobacter 10 genus 0 9598 Marinobacter psychrophilus 330734 547 0 species 1 1 species 0 952 1033846 Marinobacter adhaerens 2743 Marinobacter hydrocarbonoclasticus species 1 1817 0 0 899 1 species Marinobacter salinus 1874317 83889 no rank 3 3063 0 0 1080 1 species Marinobacter sp. CP1 1671721 490759 Marinobacter sp. BSs20148 species 1 676 0 species 1 1307 0 1749259 Marinobacter sp. LQ44 1 species 0 1022 1420916 Marinobacter similis species 1 1245 0 1420917 Marinobacter salarius 2 267894 1 Psychromonadaceae 4 family 0 898 1 67572 9 Psychromonas genus 3 896 0 1 species 0 471 357794 Psychromonas ingrahamii 2614957 416 0 no rank 1 Psychromonas sp. CNPT3 314282 416 0 species 1 1323 0 family 6 Idiomarinaceae 267893 1 6 0 1317 5 genus Idiomarina 12 1 135575 Idiomarina piscisalsi 1096243 0 182 1 species 688 0 no rank 2 2614829 361 0 species 1 Idiomarina sp. OT37-5b 2100422 species 1 327 0 2055892 Idiomarina sp. X4 Idiomarina loihiensis 135577 435 0 species 1 Colwelliaceae 267889 1 8 3274 0 family 9 2673 0 genus 6 Colwellia 1 28228 17 3 no rank 0 1499 196834 1 species 0 565 58049 Colwellia sp. MT41 1816219 Colwellia sp. PAMC 21821 species 1 404 0 530 0 species 1 Colwellia sp. PAMC 20917 1816218 0 674 1 species Colwellia psychrerythraea 28229 483 0 species 1 Colwellia beringensis 1967665 genus 2 593 0 1 1518149 4 Thalassotalea Thalassotalea crassostreae 1763536 0 589 1 species 267892 1 6 Ferrimonadaceae family 3 1646 0 44011 1 23 Ferrimonas genus 2 1640 0 Ferrimonas balearica 44012 1617 0 species 1 3 267891 1 Moritellaceae 3 family 0 391 Moritella 8 1 58050 0 388 2 genus 0 380 1 species Moritella viscosa 80854 83 1 267890 Shewanellaceae 25 family 0 12496 145 1 22 Shewanella 24 genus 0 12413 0 435 1 species Shewanella pealeana 70864 70863 Shewanella oneidensis 1 species 0 514 1 species 0 1036 60478 Shewanella amazonensis species 1 465 0 93973 Shewanella japonica Shewanella putrefaciens 24 537 0 species 1 0 550 1 species Shewanella psychrophila 225848 0 435 1 species Shewanella marisflavi 260364 species 1 459 0 2018305 Shewanella bicestrii Shewanella frigidimarina 56812 0 386 1 species 1 species 0 565 271097 Shewanella sediminis 1 species 0 615 60961 Shewanella woodyi 60217 Shewanella violacea 1 species 0 496 0 474 1 species Shewanella halifaxensis 271098 Shewanella loihica 359303 0 1008 1 species 196818 no rank 6 2375 0 1 species 0 373 351745 Shewanella sp. W3-18-1 Shewanella sp. Pdp11 2059264 0 393 1 species 60480 Shewanella sp. MR-4 species 1 254 0 1 species 0 597 2029986 Shewanella sp. WE21 60481 Shewanella sp. MR-7 1 species 0 252 Shewanella sp. ANA-3 94122 0 506 1 species 404011 Shewanella piezotolerans species 1 415 0 1237 0 species 1 Shewanella baltica 62322 266 0 species 1 Shewanella denitrificans 192073 10 135623 1 Vibrionales 43 order 0 27769 174 641 1 Vibrionaceae 42 family 0 27759 Photobacterium 1 657 14 2604 0 genus 4 38293 Photobacterium damselae species 1 901 0 74109 Photobacterium profundum species 1 632 0 0 1057 1 species Photobacterium gaetbulicola 1295392 0 499 1 genus 2042066 499 0 species 1 Paraphotobacterium marinum 1755811 Vibrio 328 1 662 0 22464 30 genus 0 326 1 species Vibrio hyugaensis 1534743 603 0 species 1 Vibrio breoganii 553239 Vibrio coralliilyticus 190893 990 0 species 1 608 0 species 1 Vibrio gazogenes 687 Vibrio tasmaniensis 212663 0 309 1 species Vibrio tapetis 52443 0 468 1 species 55601 Vibrio anguillarum species 1 900 0 843 0 no rank 2 2614977 2014742 Vibrio sp. 2521-89 species 1 366 0 Vibrio sp. EJY3 1116375 477 0 species 1 species 1 1023 0 666 Vibrio cholerae 0 1394 1 species Vibrio fluvialis 676 species group 10 8176 0 717610 species 1 295 0 190895 Vibrio rotiferianus 680 Vibrio campbellii 1 species 0 1067 293 0 species 1 Vibrio jasicida 766224 species 1 954 0 691 Vibrio natriegens 730 0 species 1 Vibrio harveyi 669 670 Vibrio parahaemolyticus 1 species 0 1562 Vibrio owensii 696485 552 0 species 1 species subgroup 2 1281 0 2315253 0 431 1 species Vibrio antiquarius 150340 850 0 species 1 Vibrio diabolicus 50719 1442 0 species 1 Vibrio alginolyticus 663 Vibrio vulnificus 672 0 2060 1 species species 1 646 0 28173 Vibrio nigripulchritudo 1891919 468 0 species group 1 29498 Vibrio tubiashii 1 species 0 468 1 species 0 604 45658 Vibrio scophthalmi Vibrio furnissii 29494 847 0 species 1 1 species 0 793 674 Vibrio mimicus species 1 504 0 2025808 Vibrio qinghaiensis 1435069 Vibrio tritonius species 1 574 0 Grimontia 246861 1 23 592 0 genus 2 0 569 1 species Grimontia hollisae 673 1 511678 4 Aliivibrio genus 4 1426 0 Aliivibrio wodanis 80852 0 472 1 species 668 Aliivibrio fischeri species 1 472 0 species 1 478 0 40269 Aliivibrio salmonicida Immundisolibacterales 55 1934945 1 0 2094 4 order Immundisolibacteraceae 77 1934946 1 0 2039 3 family 2 genus 0 1962 36 1 1934947 Immundisolibacter 1926 0 species 1 Immundisolibacter cernigliae 1810504 Xanthomonadales 964 1 135614 0 86869 54 order 981 1 32033 Xanthomonadaceae 39 family 0 71006 109 83618 1 Pseudoxanthomonas 3 genus 0 6151 Pseudoxanthomonas suwonensis 314722 4406 0 species 1 1636 0 species 1 Pseudoxanthomonas spadix 415229 genus 2 964 0 1 2370 10 Xylella species 1 954 0 2371 Xylella fastidiosa 25480 0 genus 9 Stenotrophomonas 40323 1 605 Stenotrophomonas acidaminiphila 128780 3334 0 species 1 995085 1 species group 0 11418 40324 Stenotrophomonas maltophilia 1 species 0 11418 no rank 4 6921 0 196198 1827305 Stenotrophomonas sp. MYb57 species 1 1857 0 2005046 Stenotrophomonas sp. WZN-1 species 1 1808 0 Stenotrophomonas sp. KCTC 12332 1793721 1380 0 species 1 Stenotrophomonas sp. LM091 1904944 1876 0 species 1 Stenotrophomonas nitritireducens 83617 1421 0 species 1 1 species 0 1781 216778 Stenotrophomonas rhizophila Luteimonas 12 1 83614 0 1270 2 genus Luteimonas sp. 100111 2006110 1258 0 species 1 0 9269 5 genus Lysobacter 162 1 68 Lysobacter enzymogenes 69 2225 0 species 1 species 1 2415 0 84531 Lysobacter antibioticus 0 2088 1 species Lysobacter gummosus 262324 Lysobacter capsici 435897 2379 0 species 1 1547 1 338 Xanthomonas 17 genus 0 26891 961 0 species 1 Xanthomonas phaseoli 1985254 2189 0 species 1 Xanthomonas sacchari 56458 752 0 species 1 Xanthomonas fragariae 48664 339 Xanthomonas campestris species 1 3926 0 343 Xanthomonas translucens 1 species 0 2527 0 869 1 species Xanthomonas euvesicatoria 456327 643453 0 4884 2 species group 366648 Xanthomonas fuscans 1 species 0 1414 346 Xanthomonas citri 1 species 0 3470 1 species 0 1368 56460 Xanthomonas vesicatoria 984 0 species 1 Xanthomonas axonopodis 53413 1 species 0 839 366650 Xanthomonas alfalfae 442694 Xanthomonas perforans 1 species 0 1153 Xanthomonas hortorum 56454 0 1114 1 species 1 species 0 2228 347 Xanthomonas oryzae 853 0 species 1 Xanthomonas vasicola 56459 29447 Xanthomonas albilineans species 1 697 0 1775411 1 262 Rhodanobacteraceae family 14 14899 0 6808 0 genus 4 Dyella 1 231454 162 Dyella jiangningensis 1379159 1881 0 species 1 Dyella thiooxydans 445710 0 2385 1 species 231455 Dyella japonica 1 species 0 2380 0 856 1 genus 2233801 Xanthomonadales bacterium D13 2021234 0 856 1 species 2339 0 genus 2 Dokdonella 1 323413 25 2314 0 species 1 Dokdonella koreensis 323415 2053 0 genus 2 Rhodanobacter 75309 1 33 0 2020 1 species Rhodanobacter denitrificans 666685 0 1255 2 genus Luteibacter 14 1 242605 1 species 0 1241 242606 Luteibacter rhizovicinus Frateuria 3 1 70411 0 1326 2 genus 81475 Frateuria aurantia 1 species 0 1323 0 3587 6 order Acidiferrobacterales 108 1692040 1 1692041 1 71 Acidiferrobacteraceae family 5 3479 0 genus 2 1471 0 1692042 1 28 Sulfurifustis 1675686 Sulfurifustis variabilis 1 species 0 1443 Sulfuricaulis 1744881 1 28 1937 0 genus 2 1 species 0 1909 1620215 Sulfuricaulis limicola 16822 0 order 31 Pasteurellales 135625 1 22 1 712 634 Pasteurellaceae family 30 16800 0 3 697331 1 Basfia 2 genus 0 631 157673 [Mannheimia] succiniciproducens species 1 628 0 6 genus 0 4582 49 724 1 Haemophilus 1 species 0 1717 729 Haemophilus parainfluenzae 0 1489 1 species Haemophilus influenzae 727 2609962 1 no rank 0 394 712310 Haemophilus sp. oral taxon 036 species 1 394 0 249188 Haemophilus pittmaniae species 1 487 0 species 1 446 0 730 [Haemophilus] ducreyi 2335 0 genus 5 Actinobacillus 713 1 8 715 Actinobacillus pleuropneumoniae species 1 809 0 species 1 587 0 718 Actinobacillus equuli 0 554 1 species Actinobacillus succinogenes 67854 377 0 species 1 Actinobacillus suis 716 1 416916 54 Aggregatibacter genus 3 1716 0 714 Aggregatibacter actinomycetemcomitans species 1 820 0 Aggregatibacter aphrophilus 732 0 842 1 species 2094023 genus 1 1388 0 738 Glaesserella parasuis 1 species 0 1388 0 974 2 genus Bibersteinia 7 1 476528 species 1 967 0 47735 Bibersteinia trehalosi 0 1464 3 genus Pasteurella 9 1 745 Pasteurella multocida 747 1008 0 species 1 754 Pasteurella dagmatis 1 species 0 447 214906 genus 1 630 0 Histophilus somni 731 630 0 species 1 genus 4 1847 0 75984 1 2 Mannheimia 2645054 no rank 1 519 0 519 0 species 1 Mannheimia sp. USDA-ARS-USMARC-1261 1432056 0 784 1 species Mannheimia varigena 85404 75985 Mannheimia haemolytica 1 species 0 542 3 155493 1 Gallibacterium 2 genus 0 599 0 596 1 species Gallibacterium anatis 750 118884 no rank 12 4619 0 956 0 genus 2 Thiolapillus 1 1608298 5 1076588 Thiolapillus brandeum species 1 951 0 Sedimenticola 1 349742 4 1289 0 genus 2 0 1285 1 species Sedimenticola thiotaurini 1543721 clade 3 766 0 32036 1541743 1 genus 0 238 386487 Candidatus Ruthia magnifica species 1 238 0 species 1 186 0 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont Calyptogena okutanii thioautotrophic gill symbiont 410330 342 0 species 1 Pseudohongiella 1524249 1 4 794 0 genus 2 1 species 0 790 1249552 Pseudohongiella spirulinae 655184 2 genus 0 533 1705394 Candidatus Thioglobus autotrophicus species 1 298 0 235 0 species 1 Candidatus Thioglobus singularis 1427364 1 clade 0 281 198346 186490 Candidatus Baumannia cicadellinicola species 1 281 0 1 91347 1582 Enterobacterales order 244 290027 0 21579 0 family 20 Pectobacteriaceae 1903410 1 127 Brenneria 21 1 71655 0 1213 2 genus species 1 1192 0 1109412 Brenneria goodwinii 90 84565 1 Sodalis 5 genus 0 2882 142 0 species 1 Sodalis endosymbiont of Henestaris halophilus 1929246 63612 Sodalis glossinidius species 1 741 0 1486991 Candidatus Sodalis pierantonius species 1 730 0 1 species 0 1179 1239307 Sodalis praecaptivus 316 122277 1 Pectobacterium 6 genus 0 7321 3470 0 species 1 Pectobacterium carotovorum 554 1 species 0 1358 2042057 Pectobacterium polaris 0 683 1 species Pectobacterium parmentieri 1905730 1 species 0 678 55208 Pectobacterium wasabiae Pectobacterium atrosepticum 29471 0 816 1 species Dickeya 309 1 204037 0 10036 6 genus 1089444 Dickeya solani species 1 2859 0 Dickeya dianthicola 204039 1489 0 species 1 1522 0 species 1 Dickeya dadantii 204038 1 species 0 1739 1778540 Dickeya fangzhongdai 1 species 0 2118 204042 Dickeya zeae Erwiniaceae 1 1903409 122 25810 0 family 27 genus 2 2316 0 1 32199 3 Buchnera 9 Buchnera aphidicola 1 species 0 2313 genus 8 6169 0 551 1 257 Erwinia Erwinia billingiae 182337 0 1529 1 species 0 855 1 no rank 2622719 Erwinia sp. Ejp617 215689 0 855 1 species 338565 Erwinia tasmaniensis species 1 928 0 136 0 species 1 Candidatus Erwinia sp. ErCipseudotaxifoliae 1922217 species 1 1221 0 1619313 Erwinia gerundensis Erwinia pyrifoliae 79967 680 0 species 1 species 1 563 0 552 Erwinia amylovora 2 genus 0 716 8 1 82986 Tatumella 1 species 0 708 53336 Tatumella citrea 328 0 genus 1 51228 Wigglesworthia glossinidia 51229 328 0 species 1 Pantoea 53335 1 430 12830 0 genus 11 0 883 1 species Pantoea rwandensis 1076550 0 1083 1 species Pantoea ananatis 553 Pantoea stewartii 66269 0 828 1 species 1654067 species group 1 2083 0 Pantoea agglomerans 549 2083 0 species 1 3995 0 no rank 3 2630326 1484157 Pantoea sp. PSNIH2 species 1 1691 0 1116 0 species 1 Pantoea sp. PSNIH1 1484158 0 1188 1 species Pantoea sp. At-9b 592316 1891675 Pantoea alhagi species 1 912 0 1 species 0 217 1235990 Candidatus Pantoea carbekii 470934 Pantoea vagans species 1 2399 0 0 3329 2 genus 2100764 Pantoea gaviniae 665914 0 1525 1 species 1 species 0 1804 665913 Pantoea calida 50892 0 family 39 Yersiniaceae 1903411 1 263 Chania 1745211 1 3 891 0 genus 2 Chania multitudinisentens 1639108 0 888 1 species 16 genus 0 35631 1561 613 1 Serratia 28151 Serratia proteamaculans 1 species 0 954 47917 Serratia fonticola species 1 2337 0 8635 0 species 1 Serratia marcescens 615 Serratia ficaria 61651 0 2046 1 species 614 Serratia liquefaciens 1 species 0 1519 species 1 2001 0 61652 Serratia rubidaea no rank 8 12581 0 2647522 0 1249 1 species Serratia sp. AS13 768493 1 species 0 1249 768490 Serratia sp. AS12 897 0 species 1 Serratia sp. ATCC 39006 104623 0 1796 1 species Serratia sp. SCBI 488142 1 species 0 2061 2033438 Serratia sp. MYb239 0 1985 1 species Serratia sp. FS14 1327989 Serratia sp. FGI94 671990 0 1824 1 species Serratia sp. SSNIH1 1758196 0 1520 1 species 82996 Serratia plymuthica species 1 3997 0 1381 0 genus 2 Gibbsiella 929812 1 3 929813 Gibbsiella quercinecans 1 species 0 1378 1565532 Rouxiella 1 genus 0 45 1 34037 69 Rahnella genus 4 2938 0 1 species 0 986 34038 Rahnella aquatilis no rank 2 1883 0 2635087 Rouxiella sp. ERMR1:05 1805933 887 0 species 1 741091 Rahnella sp. Y9602 species 1 996 0 Yersinia 179 1 629 0 9743 13 genus 1 no rank 0 505 2653513 Yersinia sp. FDAARGOS_228 1839800 505 0 species 1 species 1 546 0 28152 Yersinia kristensenii 460 0 species 1 Yersinia aleksiciae 263819 630 Yersinia enterocolitica species 1 1791 0 Yersinia frederiksenii 29484 1866 0 species 1 1649845 3 species group 0 2103 Yersinia similis 367190 0 560 1 species 626 0 species 1 Yersinia pestis 632 Yersinia pseudotuberculosis 633 0 917 1 species species 1 471 0 29483 Yersinia aldovae Yersinia ruckeri 29486 788 0 species 1 1 species 0 489 29485 Yersinia rohdei 545 0 species 1 Yersinia intermedia 631 605 0 family 3 Budviciaceae 1 1903416 2 2 genus 0 603 5 82984 1 Pragia species 1 598 0 82985 Pragia fontium 0 9996 21 family Morganellaceae 52 1903414 1 1740 0 genus 4 Photorhabdus 29487 1 24 Photorhabdus asymbiotica 291112 0 632 1 species Photorhabdus luminescens 29488 0 547 1 species Photorhabdus temperata 574560 0 537 1 species Providencia 15 1 586 0 1624 4 genus Providencia alcalifaciens 126385 393 0 species 1 587 Providencia rettgeri 1 species 0 443 1 species 0 773 588 Providencia stuartii Xenorhabdus 35 1 626 0 2947 6 genus 628 Xenorhabdus nematophila species 1 614 0 species 1 553 0 351671 Xenorhabdus doucetiae 453 0 species 1 Xenorhabdus hominickii 351679 0 890 1 species Xenorhabdus bovienii 40576 40577 Xenorhabdus poinarii species 1 402 0 Proteus 1 583 22 1609 0 genus 3 1083 0 species 1 Proteus mirabilis 584 species 1 504 0 585 Proteus vulgaris 0 310 1 genus 637 Arsenophonus symbiont of Lipoptena fortisetosa 634113 310 0 species 1 1714 0 genus 2 Morganella 1 581 37 1 species 0 1677 582 Morganella morganii family 117 165602 0 543 1 1366 Enterobacteriaceae 44 1 158483 Cedecea 2 genus 0 4022 species 1 3978 0 158822 Cedecea neteri 4300 0 genus 4 Shigella 1 620 252 2629414 1 no rank 0 1568 Shigella sp. PAMC 28760 1813821 1568 0 species 1 1 species 0 1013 623 Shigella flexneri 0 1467 1 species Shigella dysenteriae 622 4 genus 0 4125 47 1 1330545 Lelliottia 0 1280 1 species Lelliottia nimipressuralis 69220 Lelliottia amnigena 61646 1738 0 species 1 Lelliottia jeotgali 1907578 1060 0 species 1 0 18153 14 genus Citrobacter 812 1 544 Citrobacter rodentium 67825 0 1293 1 species 2543 0 species 1 Citrobacter amalonaticus 35703 1344959 0 9576 7 species group species 1 3589 0 546 Citrobacter freundii Citrobacter braakii 57706 1542 0 species 1 2077149 Citrobacter freundii complex sp. CFNIH9 1 species 0 658 species 1 627 0 2077147 Citrobacter freundii complex sp. CFNIH3 species 1 1693 0 67827 Citrobacter werkmanii 0 690 1 species Citrobacter freundii complex sp. CFNIH4 2077148 species 1 777 0 2066049 Citrobacter freundii complex sp. CFNIH2 545 Citrobacter koseri species 1 1210 0 2644389 0 1735 2 no rank 777 0 species 1 Citrobacter sp. FDAARGOS_156 1702170 1 species 0 958 1920110 Citrobacter sp. CFNIH10 0 984 1 species Citrobacter farmeri 67824 0 165 1 genus 401618 species 1 165 0 401619 Candidatus Riesia pediculicola 0 2820 17 no rank 191675 0 2820 17 clade 84563 148 0 genus 2 Candidatus Hoaglandella 1906659 1 1 147 0 species 1 Candidatus Hoaglandella endobia 1778263 84564 0 1048 7 clade 1048 0 genus 7 Candidatus Blochmannia 1 203804 6 Candidatus Blochmannia vafer 251535 0 161 1 species Candidatus Blochmannia floridanus 203907 180 0 species 1 122 0 species 1 Candidatus Blochmannia pennsylvanicus 101534 711328 415 0 no rank 2 species 1 195 0 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 0 220 1 species Candidatus Blochmannia chromaiodes 251542 0 164 1 species 690 0 clade 3 146507 209 0 species 1 secondary endosymbiont of Ctenarytaina eucalypti 1199245 568987 0 325 1 genus 1 species 0 325 138072 Candidatus Hamiltonella defensa 156 0 species 1 secondary endosymbiont of Heteropsylla cubana 134287 1682492 206 0 genus 1 Candidatus Tachikawaea gelatinosa 1410383 0 206 1 species 1 genus 0 149 1906661 Candidatus Gullanella endobia 1070130 149 0 species 1 genus 1 208 0 1906657 1778262 Candidatus Doolittlea endobia 1 species 0 208 1906660 182 0 genus 1 1 species 0 182 1778264 Candidatus Mikella endobia 199891 1 clade 0 189 1 species 0 189 1835721 secondary endosymbiont of Trabutina mannipara 5856 0 no rank 5 36866 0 1135 1 species Plautia stali symbiont 891974 1920128 Enterobacteriaceae bacterium ENNIH3 1 species 0 1445 1 species 0 1141 1920109 Enterobacteriaceae bacterium ENNIH2 693444 Enterobacteriaceae bacterium strain FGI 57 1 species 0 1041 species 1 1094 0 2066051 Enterobacteriaceae bacterium ENNIH1 0 30055 10 genus Klebsiella 1094 570 1 1826 0 species 1 Klebsiella quasipneumoniae 1463165 Klebsiella michiganensis 1134687 3103 0 species 1 Klebsiella quasivariicola 2026240 0 1403 1 species Klebsiella pneumoniae 573 8417 0 species 1 no rank 2 3348 0 2608929 1 species 0 1815 1934254 Klebsiella sp. M5al Klebsiella sp. LTGPAF-6F 1905288 0 1533 1 species 571 Klebsiella oxytoca species 1 5049 0 Klebsiella aerogenes 548 2406 0 species 1 244366 Klebsiella variicola 1 species 0 3409 Enterobacter 547 1 2072 30775 0 genus 22 7831 0 no rank 9 2608935 799 0 species 1 Enterobacter sp. ODB01 1827481 species 1 1356 0 1914861 Enterobacter sp. SA187 1 species 0 704 399742 Enterobacter sp. 638 1868135 Enterobacter sp. HK169 1 species 0 718 1 species 0 559 1977566 Enterobacter sp. Crenshaw 1692238 Enterobacter sp. FY-07 1 species 0 844 species 1 1002 0 2051905 Enterobacter sp. CRENT-193 0 1182 1 species Enterobacter sp. R4-368 1166130 667 0 species 1 Enterobacter sp. E20 1560339 354276 12 species group 0 20872 0 794 1 species Enterobacter cancerogenus 69218 2757714 no rank 3 2193 0 species 1 738 0 2077137 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 659 0 species 1 Enterobacter cloacae complex sp. ECNIH7 1915310 Enterobacter cloacae complex bacterium 2027919 796 0 species 1 species 1 684 0 299767 Enterobacter ludwigii Enterobacter hormaechei 1 158836 2622 4393 0 species 3 subspecies 1 711 0 1296536 Enterobacter xiangfangensis Enterobacter cloacae complex 'Hoffmann cluster III' 1812934 1060 0 subspecies 1 0 2984 1 species Enterobacter asburiae 61645 208224 Enterobacter kobei 1 species 0 815 1812935 Enterobacter cloacae complex 'Hoffmann cluster IV' species 1 681 0 Enterobacter cloacae 550 8328 0 species 1 3 genus 0 8112 15 1 590 Salmonella 28901 Salmonella enterica species 1 7219 0 Salmonella bongori 54736 878 0 species 1 genus 1 1115 0 579 Kluyvera intermedia 61648 0 1115 1 species 4 genus 0 3224 141 1 83654 Leclercia 2627398 0 2211 2 no rank Leclercia sp. LSNIH1 1920114 0 1214 1 species 0 997 1 species Leclercia sp. LSNIH3 1920116 83655 Leclercia adecarboxylata species 1 872 0 561 1 170 Escherichia genus 5 26182 0 species 1 22258 0 562 Escherichia coli 0 1096 1 species Escherichia marmotae 1499973 1669 0 species 1 Escherichia albertii 208962 0 989 1 species Escherichia fergusonii 564 176 0 genus 2 Candidatus Ishikawaella 1 409304 3 1 species 0 173 168169 Candidatus Ishikawaella capsulata Candidatus Moranella 2 1 1048757 0 62 2 genus Candidatus Moranella endobia 1048758 0 60 1 species 5044 0 genus 3 Pluralibacter 1 1330546 29 61647 Pluralibacter gergoviae 1 species 0 3036 [Enterobacter] lignolyticus 1334193 0 1979 1 species 8 genus 0 9715 224 1 413496 Cronobacter 1 species 0 1168 413502 Cronobacter turicensis 1 species 0 2062 28141 Cronobacter sakazakii 413503 Cronobacter malonaticus 1 species 0 1188 species 1 1346 0 413501 Cronobacter muytjensii 1163710 Cronobacter condimenti 1 species 0 1123 0 1315 1 species Cronobacter dublinensis 413497 0 1289 1 species Cronobacter universalis 535744 160674 1 59 Raoultella genus 3 4166 0 species 1 1227 0 575 Raoultella planticola 1 species 0 2880 54291 Raoultella ornithinolytica 1335483 genus 1 1289 0 1 species 0 1289 563 Shimwellia blattae 5 genus 0 4880 50 1330547 1 Kosakonia species 1 1130 0 1158459 Kosakonia sacchari 283686 Kosakonia radicincitans species 1 1168 0 497725 Kosakonia oryzae species 1 793 0 208223 Kosakonia cowanii species 1 1739 0 family 14 12695 0 1903412 1 48 Hafniaceae Hafnia 52 1 568 0 1970 3 genus Hafnia alvei 569 1418 0 species 1 500 0 no rank 1 2621980 species 1 500 0 1848580 Hafnia sp. CBA7124 31 1 82982 Obesumbacterium 2 genus 0 516 1 species 0 485 82983 Obesumbacterium proteus 1 635 547 Edwardsiella genus 8 10161 0 1 species 0 1141 67780 Edwardsiella ictaluri 2676541 0 2744 2 no rank 1555 0 species 1 Edwardsiella sp. EA181011 1578828 Edwardsiella sp. LADL05-105 1650654 0 1189 1 species 1195 0 species 1 Edwardsiella anguillarum 1821960 93378 Edwardsiella hoshinae 1 species 0 1018 Edwardsiella tarda 636 2217 0 species 1 species 1 1299 0 1263550 Edwardsiella piscicida 451511 0 1266 2 no rank 2 genus 0 1266 38 702 1 Plesiomonas species 1 1228 0 703 Plesiomonas shigelloides 0 12214 29 order Cellvibrionales 116 1 1706369 1706375 1 17 Spongiibacteraceae family 7 1452 0 0 350 2 genus Spongiibacter 3 1 630749 2631504 0 347 1 no rank 1620392 Spongiibacter sp. IMCC21906 1 species 0 347 Zhongshania 5 1 1434050 0 489 2 genus 1 species 0 484 1470434 Zhongshania aliphaticivorans 2 genus 0 596 13 1084558 1 Oceanicoccus 0 583 1 species Oceanicoccus sagamiensis 716816 0 3447 5 family Microbulbiferaceae 14 1706373 1 Microbulbifer 1 48073 35 3433 0 genus 4 260552 Microbulbifer agarilyticus 1 species 0 921 0 1134 1 species Microbulbifer thermotolerans 252514 1769779 Microbulbifer aggregans 1 species 0 1343 40 1 1706372 Halieaceae 4 family 0 1561 genus 3 1521 0 1 1217416 51 Halioglobus 930806 Halioglobus pacificus species 1 649 0 1 species 0 821 930805 Halioglobus japonicus Cellvibrionaceae 1 1706371 31 5638 0 family 12 Cellvibrio 17 1 10 0 2634 4 genus 1671 0 no rank 2 2624793 633 0 species 1 Cellvibrio sp. PSBB023 1945512 Cellvibrio sp. PSBB006 1987723 1038 0 species 1 155077 Cellvibrio japonicus species 1 946 0 2 genus 0 774 9 1 2425 Teredinibacter 2426 Teredinibacter turnerae species 1 765 0 840 0 genus 2 Simiduia 1 447467 14 Simiduia agarivorans 447471 0 826 1 species 768 0 genus 2 Agarilytica 1 2036021 6 1737490 Agarilytica rhodophyticola 1 species 0 762 316625 genus 1 591 0 1 species 0 591 86304 Saccharophagus degradans 0 38024 50 order Chromatiales 496 1 135613 21 1676141 1 Wenzhouxiangellaceae 3 family 0 1515 2 genus 0 1494 62 1 1676142 Wenzhouxiangella 1579979 Wenzhouxiangella marina species 1 1432 0 586 0 family 2 1738654 0 586 2 genus Woeseia 4 1738655 1 1548547 Woeseia oceani 1 species 0 582 14196 0 family 18 Chromatiaceae 1046 1 237 0 1915 2 genus Thiocystis 35 13724 1 73141 Thiocystis violascens 1 species 0 1880 7 1 1227 Nitrosococcus 4 genus 0 1041 473531 Nitrosococcus watsonii 1 species 0 296 Nitrosococcus halophilus 133539 0 368 1 species 1229 Nitrosococcus oceani species 1 370 0 genus 2 2103 0 1 85076 29 Marichromatium species 1 2074 0 37487 Marichromatium purpuratum 156885 1 19 Thioflavicoccus genus 2 1573 0 species 1 1554 0 80679 Thioflavicoccus mobilis 2219 0 genus 2 Allochromatium 1 85072 12 2207 0 species 1 Allochromatium vinosum 1049 82569 1725 0 no rank 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 1978339 0 1725 1 species 1980513 1 1 Candidatus Nitrosoglobus genus 2 242 0 Candidatus Nitrosoglobus terrae 1630141 241 0 species 1 3141 0 genus 2 Thiodictyon 1 53392 18 1166950 Candidatus Thiodictyon syntrophicum 1 species 0 3123 449719 family 2 1103 0 0 1103 2 genus Granulosicoccus 3 1 437504 437505 Granulosicoccus antarcticus 1 species 0 1100 Halothiobacillaceae 21 255526 1 0 1539 4 family 109262 1 24 Halothiobacillus genus 3 1518 0 0 909 1 no rank 2636392 species 1 909 0 1860122 Halothiobacillus sp. LS2 585 0 species 1 Halothiobacillus neapolitanus 927 16114 0 family 18 Ectothiorhodospiraceae 72276 1 222 8014 0 genus 6 Thioalkalivibrio 1 106633 162 2621013 0 1208 1 no rank 396595 Thioalkalivibrio sp. K90mix species 1 1208 0 1 species 0 933 186931 Thioalkalivibrio nitratireducens 1 species 0 1168 108010 Thioalkalivibrio paradoxus Thioalkalivibrio versutus 106634 0 1850 1 species Thioalkalivibrio sulfidiphilus 1033854 0 2693 1 species Acidihalobacter 20 1 1765964 0 1150 2 genus 1 species 0 1130 160660 Acidihalobacter prosperus genus 2 1717 0 1 85108 5 Halorhodospira 1 species 0 1712 1053 Halorhodospira halophila genus 2 1994 0 133193 1 12 Alkalilimnicola species 1 1982 0 351052 Alkalilimnicola ehrlichii Ectothiorhodospira 7 1051 1 0 1702 2 genus 2684909 1695 0 no rank 1 1 species 0 1695 1442136 Ectothiorhodospira sp. BSL-9 Spiribacter 25 1 1335745 0 1315 3 genus 1335746 Spiribacter salinus 1 species 0 466 1 species 0 824 1335757 Spiribacter curvatus 451214 2 no rank 0 2475 Thiohalobacter 50 1273155 1 0 2475 2 genus 585455 Thiohalobacter thiocyanaticus 1 species 0 2425 no rank 2 2939 0 33811 1 species 0 1752 1248727 endosymbiont of unidentified scaly snail isolate Monju species 1 1187 0 83406 gamma proteobacterium HdN1 118969 1 3 Legionellales order 19 6146 0 Coxiellaceae 3 1 118968 0 856 4 family 134284 no rank 1 158 0 1592897 Coxiella-like endosymbiont 1 species 0 158 genus 2 695 0 776 2676648 no rank 1 104 0 0 104 1 species Coxiella endosymbiont of Amblyomma americanum 325775 777 Coxiella burnetii 1 species 0 591 20 1 444 Legionellaceae 14 family 0 5287 0 4953 12 genus Legionella 32 1 445 0 401 1 species Legionella waltersii 66969 1 species 0 310 29423 Legionella oakridgensis 0 1628 1 species Legionella pneumophila 446 Legionella endosymbiont of Polyplax serrata 2005262 0 145 1 species 1 species 0 297 45067 Legionella lansingensis species 1 305 0 452 Legionella spiritensis Legionella sainthelensi 28087 384 0 species 1 species 1 426 0 450 Legionella longbeachae Legionella hackeliae 449 0 456 1 species 96230 Legionella fallonii species 1 274 0 295 0 species 1 Legionella clemsonensis 1867846 genus 1 314 0 465 1 species 0 314 451 Tatlockia micdadei Nevskiales 9 1775403 1 0 972 4 order 944 0 family 2 2689614 0 944 2 genus Steroidobacter 7 469322 1 species 1 937 0 465721 Steroidobacter denitrificans family 1 19 0 568386 Sinobacteraceae 214045 0 order 129 Pseudomonadales 1 72274 1225 0 19199 42 family Moraxellaceae 62 468 1 25 genus 0 13724 201 1 469 Acinetobacter 0 587 1 species Acinetobacter haemolyticus 29430 Acinetobacter indicus 756892 0 528 1 species 477 0 species 1 Acinetobacter oleivorans 1148157 Acinetobacter soli 487316 0 403 1 species 0 494 1 species Acinetobacter junii 40215 1789224 Acinetobacter larvae 1 species 0 414 0 591 1 species Acinetobacter johnsonii 40214 442 0 species 1 Acinetobacter bereziniae 106648 species 1 588 0 202950 Acinetobacter sp. ADP1 62977 588 0 strain 1 0 468 1 species Acinetobacter schindleri 108981 909768 5 species group 0 4835 48296 Acinetobacter pittii 1 species 0 1315 1785128 Acinetobacter lactucae 1 species 0 368 1 species 0 699 471 Acinetobacter calcoaceticus 106654 Acinetobacter nosocomialis 1 species 0 598 1 species 0 1855 470 Acinetobacter baumannii Acinetobacter radioresistens 40216 363 0 species 1 Acinetobacter equi 1324350 537 0 species 1 0 2796 7 no rank 196816 0 438 1 species Acinetobacter sp. TGL-Y2 1407071 species 1 416 0 1646498 Acinetobacter sp. TTH0-4 1758189 Acinetobacter sp. ACNIH2 species 1 340 0 1608473 Acinetobacter sp. NCu2D-2 1 species 0 365 0 524 1 species Acinetobacter sp. ACNIH1 1636603 2079596 Acinetobacter sp. SWBY1 1 species 0 246 1808001 Acinetobacter sp. LoGeW2-3 1 species 0 467 497 1 89 Psychrobacter genus 11 3126 0 0 302 1 species Psychrobacter cryohalolentis 330922 196806 6 no rank 0 1696 species 1 168 0 349106 Psychrobacter sp. PRwf-1 247 0 species 1 Psychrobacter sp. G 571800 1 species 0 309 1699624 Psychrobacter sp. P11G5 Psychrobacter sp. P2G3 1699622 279 0 species 1 1028416 Psychrobacter sp. DAB_AL43B 1 species 0 263 species 1 430 0 1720344 Psychrobacter sp. AntiMn-1 334543 Psychrobacter arcticus species 1 419 0 species 1 232 0 45610 Psychrobacter urativorans species 1 388 0 261164 Psychrobacter alimentarius 13 1 475 Moraxella 5 genus 0 2287 Moraxella osloensis 34062 0 944 1 species 480 Moraxella catarrhalis species 1 392 0 386891 Moraxella bovoculi 1 species 0 646 Moraxella ovis 29433 292 0 species 1 86 family 0 193621 1346 135621 1 Pseudomonadaceae 3 subfamily 0 6105 351 Azotobacter 63 1 352 0 6105 3 genus Azotobacter vinelandii 354 2338 0 species 1 0 3704 1 species Azotobacter chroococcum 353 0 361 2 genus Oblitimonas 2 1849530 1 1697053 Oblitimonas alkaliphila 1 species 0 359 80 genus 0 185809 6887 286 1 Pseudomonas Pseudomonas versuta 1788301 664 0 species 1 Pseudomonas alkylphenolica 237609 0 1015 1 species species group 9 24224 0 136843 species 1 1080 0 47879 Pseudomonas corrugata 76758 Pseudomonas orientalis 1 species 0 905 380021 Pseudomonas protegens species 1 2140 0 0 1102 1 species Pseudomonas mandelii 75612 1 species 0 2043 47878 Pseudomonas azotoformans 200450 Pseudomonas trivialis 1 species 0 1138 1 species 0 1046 76761 Pseudomonas veronii 1 species 0 13667 294 Pseudomonas fluorescens 200451 Pseudomonas poae species 1 1103 0 Pseudomonas cerasi 1583341 0 1052 1 species 136845 27196 0 species group 6 Pseudomonas monteilii 76759 3474 0 species 1 78327 Pseudomonas mosselii 1 species 0 2984 70775 Pseudomonas plecoglossicida species 1 1126 0 Pseudomonas putida 303 15383 0 species 1 1871 0 species 1 Pseudomonas oryzihabitans 47885 1 species 0 2358 47880 Pseudomonas fulva 6 species group 0 27153 136841 6405 0 species 1 Pseudomonas mendocina 300 2091 0 species 1 Pseudomonas alcaligenes 43263 53412 Pseudomonas resinovorans 1 species 0 2164 1 species subgroup 0 2401 1232139 1149133 Pseudomonas furukawaii 1 species 0 2401 Pseudomonas citronellolis 53408 0 4904 1 species species 1 9188 0 287 Pseudomonas aeruginosa Pseudomonas lurida 244566 0 977 1 species 0 2752 1 species Pseudomonas brassicacearum 930166 2 species group 0 11577 136846 species 1 1391 0 74829 Pseudomonas balearica 10186 0 species subgroup 1 578833 species 1 10186 0 316 Pseudomonas stutzeri Pseudomonas koreensis 198620 1984 0 species 1 species 1 2698 0 104087 Pseudomonas frederiksbergensis Pseudomonas parafulva 157782 2249 0 species 1 species 1 2260 0 65741 Pseudomonas knackmussii 0 1711 1 species Pseudomonas psychrotolerans 237610 157783 Pseudomonas cremoricolorata species 1 1151 0 0 16069 8 species group 136849 Pseudomonas avellanae 46257 0 986 1 species Pseudomonas viridiflava 33069 1236 0 species 1 1049 0 species 1 Pseudomonas cichorii 36746 0 1949 1 species Pseudomonas syringae group genomosp. 3 251701 2775504 805 0 no rank 1 1 species 0 805 1206777 Pseudomonas sp. Lz4W 251695 0 6854 1 species subgroup 317 Pseudomonas syringae 1 species 0 6854 251698 3190 0 species subgroup 2 1 species 0 1601 29438 Pseudomonas savastanoi 1 species 0 1589 47877 Pseudomonas amygdali 136842 0 9007 2 species group species 1 1791 0 296 Pseudomonas fragi 1 species 0 7216 587753 Pseudomonas chlororaphis Pseudomonas alcaliphila 101564 0 1586 1 species 0 38787 30 no rank 196821 0 1253 1 species Pseudomonas sp. FGI182 1259844 Pseudomonas sp. MRSN12121 1611770 0 1697 1 species Pseudomonas sp. SWI36 2083052 1244 0 species 1 1 species 0 657 1981174 Pseudomonas sp. M30-35 0 1675 1 species Pseudomonas sp. StFLB209 1028989 Pseudomonas sp. S-6-2 1931241 0 1253 1 species species 1 1160 0 2083051 Pseudomonas sp. SWI6 0 1671 1 species Pseudomonas sp. St29 1500687 1884 0 species 1 Pseudomonas sp. TCU-HL1 1856685 1930532 Pseudomonas sp. CC6-YY-74 species 1 1067 0 1649877 Pseudomonas sp. CCOS 191 1 species 0 1438 0 1128 1 species Pseudomonas sp. LH1G9 2083055 1 species 0 1333 69328 Pseudomonas sp. VLB120 Pseudomonas sp. URMO17WK12:I11 1283291 1880 0 species 1 1500686 Pseudomonas sp. Os17 1 species 0 1723 1659194 Pseudomonas sp. GR 6-02 1 species 0 968 1320 0 species 1 Pseudomonas sp. PONIH3 1636610 2067572 Pseudomonas sp. NC02 1 species 0 1409 species 1 829 0 2083054 Pseudomonas sp. LG1D9 0 1095 1 species Pseudomonas sp. TKP 1415630 1 species 0 909 2049589 Pseudomonas sp. HLS-6 Pseudomonas sp. UW4 1207075 847 0 species 1 Pseudomonas sp. JY-Q 1338689 0 1206 1 species species 1 1002 0 2018067 Pseudomonas sp. FDAARGOS_380 0 871 1 species Pseudomonas sp. MYb193 1827300 2069256 Pseudomonas sp. XWY-1 species 1 1230 0 1 species 0 1206 1534110 Pseudomonas sp. DR 5-09 1435 0 species 1 Pseudomonas sp. LPH1 1898684 Pseudomonas sp. ATCC 13867 1294143 2365 0 species 1 2083053 Pseudomonas sp. SWI44 species 1 1032 0 1262 0 species 1 Pseudomonas rhizosphaerae 216142 Pseudomonas entomophila 312306 0 1485 1 species 219572 Pseudomonas antarctica species 1 887 0 Pseudomonas silesiensis 1853130 1176 0 species 1 1211 28216 1 Betaproteobacteria 351 class 0 504875 33809 no rank 2 2053 0 1 species 0 1805 1904640 Betaproteobacteria bacterium GR16-43 species 1 248 0 543913 beta proteobacterium CB Burkholderiales 1 80840 4903 413669 0 order 235 0 78639 44 family Alcaligenaceae 625 506 1 Basilea 1 1 1472344 0 303 2 genus 1472345 Basilea psittacipulmonis species 1 302 0 0 35253 17 genus Bordetella 1198 1 517 species 1 1891 0 463014 Bordetella flabilis species 1 2344 0 103855 Bordetella hinzii Bordetella avium 521 1125 0 species 1 1658 0 species 1 Bordetella pertussis 520 1331258 Bordetella pseudohinzii 1 species 0 2432 1912 0 no rank 1 2630031 1912 0 species 1 Bordetella sp. H567 1697043 Bordetella genomosp. 9 1416803 1971 0 species 1 species 1 2747 0 463025 Bordetella bronchialis 2134 0 species 1 Bordetella parapertussis 519 0 1833 1 species Bordetella trematum 123899 1416806 Bordetella genomosp. 8 1 species 0 2198 518 Bordetella bronchiseptica 1 species 0 4178 1 species 0 982 35814 Bordetella holmesii species 1 2509 0 463040 Bordetella genomosp. 13 463024 Bordetella genomosp. 6 1 species 0 2300 94624 Bordetella petrii species 1 1841 0 1921582 1 57 Orrella genus 2 2790 0 2733 0 species 1 Orrella dioscoreae 1851544 19 1 290425 Advenella 3 genus 0 1631 310575 Advenella kashmirensis species 1 801 0 302406 Advenella mimigardefordensis species 1 811 0 0 281 2 genus Paenalcaligenes 3 1 1100891 species 1 278 0 643674 Paenalcaligenes hominis 1 29574 3 Taylorella genus 3 921 0 1 species 0 473 29575 Taylorella equigenitalis 1 species 0 445 84590 Taylorella asinigenitalis Achromobacter 1064 1 222 0 30203 6 genus Achromobacter xylosoxidans 85698 0 12138 1 species species 1 5056 0 217203 Achromobacter spanius 3288 0 no rank 1 2626865 1 species 0 3288 1758194 Achromobacter sp. AONIH1 6188 0 species 1 Achromobacter denitrificans 32002 species 1 2469 0 217204 Achromobacter insolitus 359336 1 82 Castellaniella genus 2 2652 0 75697 Castellaniella defragrans species 1 2570 0 Alcaligenes 1 507 14 2466 0 genus 2 0 2452 1 species Alcaligenes faecalis 511 0 1080 2 genus Pusillimonas 8 1 305976 2640016 0 1072 1 no rank species 1 1072 0 1007105 Pusillimonas sp. T7-7 1 90243 1 Oligella 2 genus 0 434 Oligella urethralis 90245 0 433 1 species family 29 45268 0 75682 1 445 Oxalobacteraceae Oxalobacter 2 1 846 0 909 2 genus Oxalobacter formigenes 847 907 0 species 1 6889 0 genus 4 Collimonas 202907 1 104 1 species 0 2332 279058 Collimonas arenae 1980 0 species 1 Collimonas fungivorans 158899 species 1 2473 0 279113 Collimonas pratensis 6 genus 0 14242 386 149698 1 Massilia Massilia sp. ZMN-3 2072590 2958 0 species 1 species 1 2611 0 2045208 Massilia sp. B2 2609279 0 5515 2 no rank 1 species 0 2947 1678028 Massilia sp. NR 4-1 1707785 Massilia sp. WG5 1 species 0 2568 1 species 0 2772 1141883 Massilia putida 17 1 303379 Herminiimonas 3 genus 0 1038 0 432 1 species Herminiimonas arsenitoxidans 1809410 Herminiimonas arsenicoxydans 204773 589 0 species 1 222 963 1 Herbaspirillum 6 genus 0 11513 Herbaspirillum frisingense 92645 3166 0 species 1 2932 0 species 1 Herbaspirillum seropedicae 964 2624150 no rank 1 1283 0 0 1283 1 species Herbaspirillum sp. meg3 2025949 341045 Herbaspirillum hiltneri 1 species 0 1544 Herbaspirillum rubrisubalbicans 80842 2366 0 species 1 Janthinobacterium 203 1 29580 0 10232 7 genus 55508 Janthinobacterium agaricidamnosum 1 species 0 1657 368607 Janthinobacterium svalbardensis species 1 2159 0 2610881 0 6213 4 no rank 375286 Janthinobacterium sp. Marseille species 1 790 0 1938606 Janthinobacterium sp. LM6 species 1 2121 0 0 2618 1 species Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 684 0 species 1 Janthinobacterium sp. B9-8 1236179 24131 0 no rank 17 224471 2 genus 0 3021 146 65047 1 Mitsuaria 2875 0 no rank 1 2648776 1658665 Mitsuaria sp. 7 1 species 0 2875 2 genus 0 2672 84 1 93681 Roseateles 1 species 0 2588 76731 Roseateles depolymerans 54 1 318147 Paucibacter 2 genus 0 1886 1 no rank 0 1832 2642959 Paucibacter sp. KCTC 42545 1768242 1832 0 species 1 90 1 28067 Rubrivivax 2 genus 0 3556 3466 0 species 1 Rubrivivax gelatinosus 28068 0 2503 1 species [Polyangium] brachysporum 413882 0 2209 2 genus Methylibium 96 1 316612 105560 Methylibium petroleiphilum 1 species 0 2113 2 genus 0 2977 148 1 212743 Rhizobacter 1 species 0 2829 946333 Rhizobacter gummiphilus 1 32012 59 Thiomonas genus 2 2633 0 Thiomonas intermedia 926 0 2574 1 species 1 88 51 Leptothrix genus 2 2674 0 34029 Leptothrix cholodnii species 1 2623 0 80841 4861 0 no rank 2 1 species 0 3713 1834205 Burkholderiales bacterium YL45 0 1148 1 species Burkholderiales bacterium GJ-E10 1469502 Comamonadaceae 80864 1 1659 100027 0 family 58 Polaromonas 52972 1 38 3856 0 genus 3 1 no rank 0 1743 2638319 1743 0 species 1 Polaromonas sp. JS666 296591 216465 Polaromonas naphthalenivorans species 1 2075 0 4016 0 genus 3 Ottowia 1 219181 38 2645081 no rank 1 1724 0 1658672 Ottowia sp. oral taxon 894 species 1 1724 0 Ottowia sp. KADR8-3 2109914 2254 0 species 1 387 1 34072 Variovorax 5 genus 0 14956 436515 Variovorax boronicumulans species 1 2998 0 663243 no rank 2 4992 0 1 species 0 3490 2126319 Variovorax sp. PMC12 Variovorax sp. PAMC 28711 1795631 1502 0 species 1 6579 0 species 1 Variovorax paradoxus 34073 5 genus 0 13628 520 80865 1 Delftia 0 6759 2 no rank 2613839 Delftia sp. HK171 1920191 3322 0 species 1 742013 Delftia sp. Cs1-4 1 species 0 3437 Delftia acidovorans 80866 0 3410 1 species 2939 0 species 1 Delftia tsuruhatensis 180282 0 2911 2 genus Alicycliphilus 21 1 201096 179636 Alicycliphilus denitrificans 1 species 0 2890 1677 0 genus 2 Simplicispira 1 352450 15 Simplicispira sp. SC1-8 2109915 1662 0 species 1 1949 0 genus 2 Verminephrobacter 1 364316 8 1941 0 species 1 Verminephrobacter eiseniae 364317 0 6583 5 genus Rhodoferax 62 1 28065 1 species 0 1213 81479 Rhodoferax antarcticus 1484693 Rhodoferax saidenbachensis species 1 1687 0 192843 Rhodoferax ferrireducens 1 species 0 1197 species 1 2424 0 1842727 Rhodoferax koreense genus 2 4797 0 1 174951 76 Ramlibacter 94132 Ramlibacter tataouinensis species 1 4721 0 3 genus 0 1624 1 1 665874 Limnohabitans 2 no rank 0 1623 2626134 Limnohabitans sp. 63ED37-2 1678128 1130 0 species 1 1678129 Limnohabitans sp. 103DPR2 species 1 493 0 Hydrogenophaga 133 47420 1 0 6353 4 genus species 1 1383 0 1763535 Hydrogenophaga crassostreae 2610897 0 4837 2 no rank Hydrogenophaga sp. PBC 795665 2735 0 species 1 0 2102 1 species Hydrogenophaga sp. RAC07 1842537 Melaminivora 71 1649468 1 0 2221 2 genus 2641902 1 no rank 0 2150 2109913 Melaminivora sp. SC2-9 species 1 2150 0 genus 2 1958 0 1 238749 14 Diaphorobacter Diaphorobacter polyhydroxybutyrativorans 1546149 0 1944 1 species 2678886 2415 0 genus 1 Melaminivora sp. SC2-7 2116657 0 2415 1 species 2571 0 genus 2 2490452 1 species 0 1335 1458425 Comamonadaceae bacterium A1 1458426 Comamonadaceae bacterium B1 1 species 0 1236 Comamonas 1 283 83 8739 0 genus 4 species 1 4164 0 285 Comamonas testosteroni 0 2189 1 species Comamonas kerstersii 225992 Comamonas serinivorans 1082851 0 2303 1 species 1436289 genus 1 857 0 857 0 species 1 Candidatus Symbiobacter mobilis 1436290 9 genus 0 17257 702 1 12916 Acidovorax Acidovorax ebreus 721785 1847 0 species 1 0 2195 1 species Acidovorax avenae 80867 2684926 4 no rank 0 8676 1811 0 species 1 Acidovorax sp. T1 1858609 Acidovorax sp. RAC01 1842533 2219 0 species 1 358220 Acidovorax sp. KKS102 species 1 2577 0 1 species 0 2069 232721 Acidovorax sp. JS42 0 2041 1 species Acidovorax citrulli 80869 553814 Acidovorax sp. NA3 1 species 0 1796 119060 1 1099 Burkholderiaceae family 84 155840 0 1827195 1522 0 genus 1 0 1522 1 species Burkholderia sp. RPE64 758793 41 genus 0 79151 4220 1 32008 Burkholderia 1 species 0 2192 41899 Burkholderia plantarii 14252 0 no rank 11 2613784 Burkholderia sp. YI23 1097668 0 1751 1 species 1 species 0 1154 416344 Burkholderia sp. KJ006 Burkholderia sp. Bp7605 1740163 1155 0 species 1 640512 Burkholderia sp. CCGE1003 1 species 0 1407 Burkholderia sp. PAMC 28687 1795874 1085 0 species 1 1344 0 species 1 Burkholderia sp. CCGE1001 640510 1678678 Burkholderia sp. HB1 species 1 1481 0 species 1 1106 0 1468409 Burkholderia sp. 2002721687 1795043 Burkholderia sp. PAMC 26561 1 species 0 980 Burkholderia sp. Bp5365 1740162 0 1130 1 species Burkholderia sp. RPE67 758796 1659 0 species 1 19 species group 0 39487 87882 0 5968 1 species Burkholderia cenocepacia 95486 Burkholderia ambifaria 152480 1585 0 species 1 87883 Burkholderia multivorans species 1 2709 0 [Pseudomonas] mesoacidophila 265293 1213 0 species 1 species 1 897 0 1503055 Burkholderia territorii species 1 1172 0 488447 Burkholderia contaminans Burkholderia pyrrocinia 60550 910 0 species 1 Burkholderia dolosa 152500 1139 0 species 1 Burkholderia cepacia 292 6885 0 species 1 1063 0 species 1 Burkholderia diffusa 488732 0 1995 1 species Burkholderia lata 482957 1503054 Burkholderia stagnalis species 1 1343 0 0 2096 1 species Burkholderia vietnamiensis 60552 species 1 1345 0 1207504 Burkholderia pseudomultivorans Burkholderia metallica 488729 1128 0 species 1 101571 Burkholderia ubonensis 1 species 0 3932 1974 0 species 1 Burkholderia stabilis 95485 0 1057 1 species Burkholderia seminalis 488731 species 1 1076 0 488446 Burkholderia latens species 1 3990 0 28095 Burkholderia gladioli 0 3776 1 species Burkholderia glumae 337 11234 0 species group 7 111527 1103 0 species 1 Burkholderia mallei 13373 1637831 Burkholderia sp. MSMB617WGS 1 species 0 910 Burkholderia oklahomensis 342113 0 1566 1 species 2756 0 species 1 Burkholderia thailandensis 57975 28450 Burkholderia pseudomallei species 1 2891 0 species 1 1049 0 1637837 Burkholderia sp. MSMB0266 1 species 0 959 1637841 Burkholderia sp. MSMB0852 1 44013 6 Polynucleobacter genus 4 704 0 294 0 species 1 Polynucleobacter asymbioticus 576611 Polynucleobacter duraquae 1835254 0 231 1 species Polynucleobacter necessarius 576610 173 0 species 1 9 genus 0 23778 839 106589 1 Cupriavidus 119219 Cupriavidus metallidurans species 1 1840 0 106590 Cupriavidus necator species 1 4607 0 Cupriavidus basilensis 68895 0 2608 1 species 248026 Cupriavidus pinatubonensis 1 species 0 2130 Cupriavidus gilardii 82541 2135 0 species 1 1 species 0 3136 367825 Cupriavidus sp. USMAA1020 2640874 no rank 2 6483 0 1 species 0 3345 876364 Cupriavidus sp. USMAA2-4 1389192 Cupriavidus sp. USMAHM13 species 1 3138 0 0 19320 12 genus Paraburkholderia 385 1 1822464 948107 Paraburkholderia sprentiae species 1 1754 0 species 1 1737 0 36873 Paraburkholderia xenovorans 1 no rank 0 1216 2615204 Paraburkholderia sp. SOS3 1926494 1216 0 species 1 species 1 1854 0 169430 Paraburkholderia hospita 75105 Paraburkholderia caribensis 1 species 0 2788 252970 Paraburkholderia phenoliruptrix species 1 1321 0 species 1 1888 0 2026199 Paraburkholderia aromaticivorans species 1 1706 0 311230 Paraburkholderia terrae 1439 0 species 1 Paraburkholderia fungorum 134537 1640 0 species 1 Paraburkholderia phytofirmans 261302 Paraburkholderia phymatum 148447 1592 0 species 1 12590 0 genus 10 Pandoraea 1 93217 285 Pandoraea thiooxydans 445709 1275 0 species 1 1225 0 species 1 Pandoraea faecigallinarum 656179 Pandoraea norimbergensis 93219 0 1287 1 species 656178 Pandoraea vervacti species 1 1446 0 1333 0 species 1 Pandoraea sputorum 93222 573737 Pandoraea oxalativorans 1 species 0 1553 Pandoraea pulmonicola 93221 0 1384 1 species 93218 Pandoraea apista 1 species 0 1224 1 species 0 1578 93220 Pandoraea pnomenusa 2571159 genus 1 708 0 species 1 708 0 412963 Paraburkholderia rhizoxinica Ralstonia 331 1 48736 0 16968 5 genus 1 species 0 8304 305 Ralstonia solanacearum 0 2406 1 species Ralstonia mannitolilytica 105219 329 Ralstonia pickettii species 1 3627 0 0 2300 1 species Ralstonia insidiosa 190721 0 39585 36 order Neisseriales 510 1 206351 1 1499392 380 Chromobacteriaceae family 13 20036 0 34 1 187 Aquaspirillum 2 genus 0 1982 2620219 1 no rank 0 1948 1948 0 species 1 Aquaspirillum sp. LM1 1938604 Pseudogulbenkiania 1 568394 33 2857 0 genus 2 2642558 1 no rank 0 2824 748280 Pseudogulbenkiania sp. NH8B 1 species 0 2824 10759 0 no rank 4 90153 0 10759 4 genus Chromobacterium 226 1 535 4178 0 species 1 Chromobacterium vaccinii 1108595 0 3272 1 species Chromobacterium violaceum 536 2641838 3083 0 no rank 1 3083 0 species 1 Chromobacterium sp. ATCC 53434 2059672 0 1837 2 genus Jeongeupia 29 1 885864 1 no rank 0 1808 2619593 1906741 Jeongeupia sp. USM3 species 1 1808 0 Laribacter 1 168470 34 2221 0 genus 2 168471 Laribacter hongkongensis species 1 2187 0 1 481 212 Neisseriaceae family 22 19039 0 1 482 257 Neisseria genus 12 14421 0 1 species 0 909 488 Neisseria mucosa 485 Neisseria gonorrhoeae species 1 1165 0 species 1 1633 0 486 Neisseria lactamica 0 930 1 species Neisseria zoodegmatis 326523 1 species 0 834 28091 Neisseria weaveri 0 974 1 species Neisseria sicca 490 0 890 1 species Neisseria elongata 495 1853278 Neisseria sp. 10023 species 1 1138 0 Neisseria meningitidis 487 0 3139 1 species 2623750 no rank 2 2552 0 649 0 species 1 Neisseria sp. 10022 1853276 655307 Neisseria sp. KEM232 species 1 1903 0 1833 0 genus 3 Vitreoscilla 1 59 85 2627922 no rank 1 222 0 Vitreoscilla sp. C1 96942 222 0 species 1 1526 0 species 1 Vitreoscilla filiformis 63 0 334 1 genus 71 Simonsiella muelleri 72 334 0 species 1 1322 0 genus 2 Eikenella 1 538 17 Eikenella corrodens 539 0 1305 1 species 413 0 no rank 1 421605 2052837 Neisseriaceae bacterium DSM 100970 1 species 0 413 Snodgrassella 3 1 1193515 0 504 2 genus species 1 501 0 1196083 Snodgrassella alvi 11 no rank 0 2707 119066 genus 1 16 0 189384 Candidatus Tremblaya princeps 189385 16 0 species 1 genus 2 1654 0 1 327159 23 Candidatus Accumulibacter 1 species 0 1631 327160 Candidatus Accumulibacter phosphatis 1301080 16 0 genus 1 0 16 1 species Candidatus Nasuia deltocephalinicola 1160784 97 0 genus 1 1381133 0 97 1 species Candidatus Profftella armatura 669502 924 0 genus 6 Kinetoplastibacterium 1 33055 16 0 137 1 species Candidatus Kinetoplastibacterium oncopeltii 994696 152 0 species 1 Kinetoplastibacterium blastocrithidii 233181 994695 Candidatus Kinetoplastibacterium galatii 1 species 0 172 Candidatus Kinetoplastibacterium crithidii 33056 0 178 1 species 0 269 1 species Candidatus Kinetoplastibacterium desouzaii 994692 1 206389 488 Rhodocyclales order 22 28046 0 581 2008794 1 Zoogloeaceae 12 family 0 19834 6 genus 0 11397 343 1 33057 Thauera 0 5171 2 no rank 2609274 species 1 2659 0 85643 Thauera sp. MZ1T Thauera sp. K11 2005884 0 2512 1 species 59405 Thauera aromatica species 1 1846 0 1 species 0 1762 96773 Thauera chlorobenzoica 1134435 Thauera humireducens species 1 2275 0 12960 1 212 Azoarcus genus 5 7856 0 2629479 2 no rank 0 4141 Azoarcus sp. KH32C 748247 2032 0 species 1 1 species 0 2109 198107 Azoarcus sp. CIB species 1 1864 0 418699 Azoarcus olearius 2067960 Azoarcus sp. SY39 1 species 0 1639 0 1446 3 family Azonexaceae 43 1 2008795 26 1 73029 Dechloromonas 2 genus 0 1403 Dechloromonas aromatica 259537 0 1377 1 species 6 family 0 6278 67 75787 1 Rhodocyclaceae Aromatoleum 1 551759 48 1376 0 genus 2 species 1 1328 0 551760 Aromatoleum aromaticum 1 no rank 0 1373 75788 1 species 0 1373 1898103 Rhodocyclaceae bacterium Azospira 1 146937 79 3462 0 genus 2 Azospira oryzae 146939 0 3383 1 species order 44 17604 0 32003 1 184 Nitrosomonadales family 5 3631 0 1 2008793 108 Sterolibacteriaceae 0 1666 2 genus Methyloversatilis 42 1 378210 no rank 1 1624 0 2639971 Methyloversatilis sp. RAC08 1842540 0 1624 1 species 2 genus 0 1857 55 1054211 1 Sulfuritalea Sulfuritalea hydrogenivorans 748811 0 1802 1 species 0 1300 3 family Thiobacillaceae 11 2008790 1 0 1289 2 genus Thiobacillus 22 1 919 Thiobacillus denitrificans 36861 0 1267 1 species Gallionellaceae 57 90627 1 0 2181 5 family genus 2 790 0 96 1 13 Gallionella species 1 777 0 370405 Gallionella capsiferriformans Sideroxydans 39 314343 1 0 1334 2 genus 1295 0 species 1 Sideroxydans lithotrophicus 63745 4 family 0 1878 2772226 genus 2 964 0 1 935200 39 Sulfuricella 1 species 0 925 649841 Sulfuricella denitrificans genus 2 914 0 1 1778653 8 Sulfuriferula 1 no rank 0 906 2637784 species 1 906 0 1985873 Sulfuriferula sp. AH1 Methylophilaceae 19 1 32011 0 3819 14 family 657 0 genus 3 Methylotenera 359407 1 2 0 246 1 species Methylotenera mobilis 359408 1055487 Methylotenera versatilis 1 species 0 409 Methylobacillus 1 404 8 739 0 genus 2 731 0 species 1 Methylobacillus flagellatus 405 1 1679002 1 Candidatus Methylopumilus 3 genus 0 578 1581557 Candidatus Methylopumilus planktonicus 1 species 0 332 245 0 species 1 Candidatus Methylopumilus turicensis 1581680 genus 2 474 0 1 16 3 Methylophilus 2630143 471 0 no rank 1 471 0 species 1 Methylophilus sp. TWE2 1662285 1 81682 22 Methylovorus genus 3 1352 0 species 1 671 0 266009 Methylovorus glucosotrophus 1 no rank 0 659 2634027 1 species 0 659 887061 Methylovorus sp. MP688 33 1 206379 Nitrosomonadaceae 12 family 0 4611 0 2919 7 genus Nitrosomonas 10 1 914 Nitrosomonas europaea 915 804 0 species 1 species 1 418 0 916 Nitrosomonas eutropha Nitrosomonas communis 44574 403 0 species 1 44577 Nitrosomonas ureae 1 species 0 297 no rank 2 987 0 2609265 Nitrosomonas sp. Is79A3 261292 617 0 species 1 Nitrosomonas sp. AL212 153948 0 370 1 species 1 35798 19 Nitrosospira genus 4 1659 0 1 species 0 556 35799 Nitrosospira briensis species 1 583 0 1288494 Nitrosospira lacus 501 0 species 1 Nitrosospira multiformis 1231 class 9 4427 0 1 1553900 2 Oligoflexia 23 213481 1 Bdellovibrionales 5 order 0 2858 213483 1 7 Bdellovibrionaceae family 4 2835 0 3 genus 0 2828 4 1 958 Bdellovibrio Bdellovibrio bacteriovorus 959 2506 0 species 1 Bdellovibrio exovorus 453816 318 0 species 1 Bacteriovoracales 1 2024979 1 1567 0 order 3 758 0 family 1 263369 genus 1 758 0 146784 960 Bacteriovorax stolpii species 1 758 0 1 family 0 808 1652132 genus 1 808 0 1652133 Halobacteriovorax marinus 97084 808 0 species 1 68525 201 subphylum 0 274075 72 class 0 66591 188 1 29547 Epsilonproteobacteria 235899 1 1 Nautiliales order 6 1293 0 2795691 411 0 family 2 2 genus 0 411 1 1 269258 Nitratiruptor no rank 1 410 0 2624044 species 1 410 0 387092 Nitratiruptor sp. SB155-2 Nautiliaceae 224467 1 2 881 0 family 3 1 191291 6 Nautilia genus 2 879 0 244787 Nautilia profundicola species 1 873 0 Campylobacterales 2263 1 213849 0 65110 65 order 2771471 0 1562 4 family 1 202746 1 Sulfurimonas genus 3 1067 0 Sulfurimonas autotrophica 202747 651 0 species 1 species 1 415 0 39766 Sulfurimonas denitrificans 286130 0 495 1 genus 495 0 species 1 Sulfuricurvum kujiense 148813 14 family 0 5497 18 72293 1 Helicobacteraceae genus 1 347 0 843 844 Wolinella succinogenes 1 species 0 347 1 209 12 Helicobacter genus 12 5132 0 303 0 species 1 Helicobacter bilis 37372 244 0 species 1 Helicobacter himalayensis 1591088 species 1 145 0 212 Helicobacter acinonychis species 1 409 0 32025 Helicobacter hepaticus 136 0 species 1 Helicobacter felis 214 198 0 species 1 Helicobacter mustelae 217 Helicobacter cetorum 138563 379 0 species 1 0 354 1 no rank 2593540 222136 Helicobacter sp. MIT 01-6242 species 1 354 0 0 2154 1 species Helicobacter pylori 210 0 305 1 species Helicobacter typhlonius 76936 species 1 493 0 213 Helicobacter cinaedi 2771472 0 2462 5 family 15 265570 1 Sulfurovum 3 genus 0 1370 0 654 1 species Sulfurovum lithotrophicum 206403 2646778 1 no rank 0 701 Sulfurovum sp. NBC37-1 387093 0 701 1 species genus 2 1092 0 1 269260 2 Nitratifractor Nitratifractor salsuginis 269261 0 1090 1 species 0 53326 41 family Campylobacteraceae 4544 72294 1 Campylobacter 1 194 465 41346 0 genus 26 0 374 1 species Campylobacter avium 522485 Campylobacter helveticus 28898 0 307 1 species 824 Campylobacter gracilis species 1 607 0 1 species 0 1442 201 Campylobacter lari Campylobacter iguaniorum 1244531 414 0 species 1 species 1 556 0 488546 Campylobacter peloridis 477 0 species 1 Campylobacter hominis 76517 1199 0 species 1 Campylobacter fetus 196 0 725 1 species Campylobacter hyointestinalis 198 1 species 0 721 1965231 Campylobacter pinnipediorum 206 Campylobacter sputorum 1 species 0 707 195 Campylobacter coli 1 species 0 20377 0 387 1 species Campylobacter volucris 1031542 1 species 0 677 199 Campylobacter concisus 1 species 0 7878 197 Campylobacter jejuni 844 0 species 1 Campylobacter lanienae 75658 1 species 0 392 200 Campylobacter curvus species 1 374 0 260714 Campylobacter insulaenigrae 2593542 1383 0 no rank 4 Campylobacter sp. RM6137 1660073 0 226 1 species Campylobacter sp. RM12175 1660076 302 0 species 1 Campylobacter sp. RM8964 1660074 0 385 1 species Campylobacter sp. RM16704 1500960 470 0 species 1 374106 Campylobacter cuniculorum 1 species 0 278 Campylobacter subantarcticus 497724 0 404 1 species Campylobacter ureolyticus 827 0 358 1 species 5 no rank 0 4335 2321108 2321187 0 927 1 genus species 1 927 0 1850254 Arcobacter sp. LPB0137 Arcobacter 1 28196 29 2188 0 genus 3 Arcobacter nitrofigilis 28199 0 930 1 species 1 species 0 1229 28197 Arcobacter butzleri 0 1220 1 no rank 2321207 1220 0 species 1 Arcobacter sp. L 944547 9 genus 0 3101 49 1 57665 Sulfurospirillum Sulfurospirillum cavolei 366522 381 0 species 1 271 0 species 1 Sulfurospirillum deleyianum 65553 2618290 3 no rank 0 1131 382 0 species 1 Sulfurospirillum sp. SL2-1 1986224 220622 Sulfurospirillum sp. JPD-1 1 species 0 383 1 species 0 366 1581011 Sulfurospirillum sp. UCH001 Sulfurospirillum halorespirans 194424 384 0 species 1 44674 Sulfurospirillum barnesii 1 species 0 421 0 464 1 species Sulfurospirillum multivorans 66821 class 129 207484 0 28221 1 527 Deltaproteobacteria 0 63608 26 order Desulfovibrionales 486 213115 1 3 family 0 927 5 1 213117 Desulfohalobiaceae 0 922 2 genus Desulfohalobium 6 1 45662 1 species 0 916 45663 Desulfohalobium retbaense Desulfomicrobiaceae 86 213116 1 0 5092 4 family genus 3 5006 0 1 898 65 Desulfomicrobium species 1 2700 0 899 Desulfomicrobium baculatum Desulfomicrobium orale 132132 0 2241 1 species 343 194924 1 Desulfovibrionaceae 18 family 0 57103 0 907 2 genus Lawsonia 2 41707 1 Lawsonia intracellularis 29546 0 905 1 species 2582840 2948 0 genus 1 2948 0 species 1 Desulfovibrio africanus 873 0 1352 1 genus 2794998 0 1352 1 species Desulfovibrio salexigens 880 0 9754 4 genus Pseudodesulfovibrio 118 1 2035811 57320 Pseudodesulfovibrio profundus species 1 1436 0 1 species 0 4492 1716143 Pseudodesulfovibrio indicus species 1 3708 0 182210 Pseudodesulfovibrio aespoeensis Desulfovibrio 1 872 407 41799 0 genus 9 1 species 0 9773 881 Desulfovibrio vulgaris 0 7585 1 species Desulfovibrio piger 901 44742 Desulfovibrio fairfieldensis species 1 5462 0 0 1072 1 species Candidatus Desulfovibrio trichonymphae 1725232 Desulfovibrio desulfuricans 876 8174 0 species 1 Desulfovibrio alaskensis 58180 0 2236 1 species 1 species 0 4082 184917 Desulfovibrio magneticus 2593640 3008 0 no rank 1 631220 Desulfovibrio sp. G11 species 1 3008 0 42042 0 order 24 Desulfuromonadales 1 69541 610 13580 0 family 9 Desulfuromonadaceae 213421 1 204 Pelobacter 84 1 18 0 8147 5 genus 19 Pelobacter carbinolicus species 1 1499 0 2620299 1 no rank 0 1496 1 species 0 1496 1842532 Pelobacter sp. SFB93 0 1970 1 species Pelobacter acetylenicus 29542 3098 0 species 1 Pelobacter propionicus 29543 Desulfuromonas 1 890 36 5229 0 genus 3 Desulfuromonas soudanensis 1603606 2722 0 species 1 2614637 no rank 1 2471 0 0 2471 1 species Desulfuromonas sp. DDH964 1823759 220 1 213422 Geobacteraceae 14 family 0 27852 2 genus 0 1865 12 1 392332 Geoalkalibacter 1853 0 species 1 Geoalkalibacter subterraneus 483547 493 1 28231 Geobacter 11 genus 0 25767 2649 0 species 1 Geobacter anodireducens 1340425 1 species 0 2081 28232 Geobacter metallireducens Geobacter uraniireducens 351604 2142 0 species 1 0 2960 1 species Geobacter bemidjiensis 225194 2642 0 species 1 Geobacter pickeringii 345632 1203471 Geobacter daltonii species 1 1507 0 2413 0 species 1 Geobacter lovleyi 313985 Geobacter sulfurreducens 35554 0 2321 1 species 0 6559 2 no rank 2627627 443143 Geobacter sp. M18 species 1 3769 0 443144 Geobacter sp. M21 1 species 0 2790 0 76707 38 order Myxococcales 1071 29 1 80811 suborder 26 57007 0 Myxococcaceae 151 1 31 0 26990 9 family 114 1 83461 Corallococcus 3 genus 0 8660 0 4610 1 species Corallococcus coralloides 184914 3936 0 species 1 Myxococcus macrosporus 35 genus 5 18179 0 32 1 616 Myxococcus 1297742 Myxococcus hansupus 1 species 0 3509 34 Myxococcus xanthus 1 species 0 2981 0 7606 1 species Myxococcus fulvus 33 species 1 3467 0 83455 Myxococcus stipitatus 0 1949 3 family Vulgatibacteraceae 34 1524213 1 2 genus 0 1915 28 1 1524214 Vulgatibacter 1391653 Vulgatibacter incomptus 1 species 0 1887 39 1 272 Archangiaceae family 9 16425 0 Cystobacter 17 1 42 0 4385 2 genus 43 Cystobacter fuscus species 1 4368 0 3848 0 genus 2 Melittangium 1 44 18 Melittangium boletus 83453 3830 0 species 1 Archangium 1 47 25 4452 0 genus 2 48 Archangium gephyra 1 species 0 4427 0 3468 2 genus Stigmatella 17 1 40 41 Stigmatella aurantiaca 1 species 0 3451 Anaeromyxobacteraceae 122 1524215 1 0 11643 5 family genus 4 11521 0 1 161492 252 Anaeromyxobacter 2 no rank 0 5890 2620896 0 3350 1 species Anaeromyxobacter sp. K 447217 species 1 2540 0 404589 Anaeromyxobacter sp. Fw109-5 5379 0 species 1 Anaeromyxobacter dehalogenans 161493 3907 0 suborder 3 224462 224464 1 50 Kofleriaceae family 3 3907 0 Haliangium 162027 1 70 3857 0 genus 2 Haliangium ochraceum 80816 0 3787 1 species 80812 8 suborder 0 14722 family 5 11986 0 49 1 78 Polyangiaceae genus 2 2419 0 50 1 7 Chondromyces 1 species 0 2412 52 Chondromyces crocatus 64 39643 1 Sorangium 2 genus 0 9489 56 Sorangium cellulosum species 1 9425 0 3 family 0 2736 27 1055686 1 Sandaracinaceae Sandaracinus 1 1055688 42 2709 0 genus 2 2667 0 species 1 Sandaracinus amylolyticus 927083 10 order 0 4869 86 213462 1 Syntrophobacterales Syntrophaceae 213468 1 12 3039 0 family 6 1073 0 genus 2 Syntrophus 43773 1 3 1070 0 species 1 Syntrophus aciditrophicus 316277 1 60892 4 Desulfobacca genus 2 952 0 0 948 1 species Desulfobacca acetoxidans 60893 2357 0 1002 1 genus species 1 1002 0 2358 Desulfomonile tiedjei Syntrophobacteraceae 1 213465 14 1744 0 family 3 1 29526 19 Syntrophobacter genus 2 1730 0 1 species 0 1711 119484 Syntrophobacter fumaroxidans 2 213113 1 Desulfurellales 6 order 0 944 6 1 117942 Desulfurellaceae 5 family 0 942 312 0 genus 2 Hippea 1 84404 2 Hippea maritima 84405 0 310 1 species Desulfurella 9 1 33001 0 624 2 genus Desulfurella acetivorans 33002 615 0 species 1 Desulfarculales 1 453227 41 4177 0 order 4 50 1 453228 Desulfarculaceae 3 family 0 4136 Desulfarculus 51 1 453229 0 4086 2 genus Desulfarculus baarsii 453230 0 4035 1 species 20 order 0 14610 190 213118 1 Desulfobacterales 9 family 0 6259 50 213121 1 Desulfobulbaceae genus 2 734 0 1 109168 10 Desulfotalea Desulfotalea psychrophila 84980 724 0 species 1 1 893 3 Desulfobulbus genus 2 2178 0 species 1 2175 0 1986146 Desulfobulbus sp. ORNL 1 53318 9 Desulfocapsa genus 2 897 0 888 0 species 1 Desulfocapsa sulfexigens 65555 genus 2 2400 0 427922 1 11 Desulfurivibrio 427923 Desulfurivibrio alkaliphilus species 1 2389 0 62 213119 1 Desulfobacteraceae 10 family 0 8161 0 4038 3 genus Desulfococcus 28 1 896 1 species 0 1923 897 Desulfococcus multivorans Desulfococcus oleovorans 181663 0 2087 1 species Desulfobacterium 5 1 2295 0 1495 2 genus 2296 Desulfobacterium autotrophicum 1 species 0 1490 genus 2 1638 0 1 218207 8 Desulfatibacillum 1630 0 species 1 Desulfatibacillum alkenivorans 259354 Desulfobacula 1 28222 1 928 0 genus 2 28223 Desulfobacula toluolica 1 species 0 927 74152 1 2 Elusimicrobia phylum 9 1542 0 0 265 1 no rank 99260 167965 uncultured Termite group 1 bacterium 1 species 0 265 447830 824 0 class 5 824 0 order 5 Endomicrobiales 1 1783344 1 Endomicrobiaceae 1783343 1 1 823 0 family 4 Endomicrobium 2 1 1408194 0 822 3 genus 1 species 0 275 1408204 Candidatus Endomicrobium trichonymphae 1 species 0 545 1408281 Endomicrobium proavitum class 2 451 0 641853 641854 1 5 Elusimicrobiales order 2 451 0 1 family 0 446 641876 423604 1 genus 0 446 423605 Elusimicrobium minutum 1 species 0 446 6384 0 phylum 13 40117 13 class 0 6384 44 203693 1 Nitrospira 6340 0 order 12 Nitrospirales 189778 1 41 Nitrospiraceae 189779 1 31 6299 0 family 11 179 1 17 Leptospirillum genus 4 1594 0 species group 1 552 0 261385 Leptospirillum sp. Group II 'CF-1' 1660083 552 0 species 1 261386 567 0 species group 1 178606 Leptospirillum ferriphilum 1 species 0 567 655606 1 species group 0 458 Leptospirillum ferrooxidans 180 458 0 species 1 27 1 1234 Nitrospira 5 genus 0 4018 1715989 Candidatus Nitrospira inopinata 1 species 0 766 species 1 1608 0 42253 Nitrospira moscoviensis Nitrospira japonica 1325564 755 0 species 1 Nitrospira defluvii 330214 862 0 species 1 1 genus 0 656 28261 Thermodesulfovibrio yellowstonii 28262 0 656 1 species clade 4 323 0 2498710 phylum 4 323 0 67814 693071 323 0 class 4 4 order 0 323 4 1 693072 Caldisericales Caldisericaceae 9 1 693073 0 319 3 family genus 2 310 0 1 693074 4 Caldisericum 306 0 species 1 Caldisericum exile 693075 203691 0 50089 58 phylum 135 203692 1 Spirochaetia 58 class 0 50089 0 7919 7 order Brachyspirales 9 1643686 1 6 family 0 7910 45 143786 1 Brachyspiraceae Brachyspira 29521 1 45 7865 0 genus 5 1551 0 species 1 Brachyspira intermedia 84377 1 species 0 3124 52584 Brachyspira pilosicoli 84378 Brachyspira murdochii 1 species 0 1327 Brachyspira hyodysenteriae 159 1818 0 species 1 1643688 9 order 0 3853 10 170 1 Leptospiraceae 9 family 0 3853 1 1 338321 Turneriella 2 genus 0 873 872 0 species 1 Turneriella parva 29510 Leptospira 10 1 171 0 2970 6 genus Leptospira interrogans 173 0 928 1 species Leptospira santarosai 28183 567 0 species 1 527 0 species 1 Leptospira borgpetersenii 174 species 1 518 0 28452 Leptospira alstonii 1 species 0 420 172 Leptospira biflexa Spirochaetales 1 136 915 38182 0 order 41 23 family 0 32348 515 1 137 Spirochaetaceae 1211 0 genus 2 Salinispira 1616789 1 1 Salinispira pacifica 1307761 1210 0 species 1 0 1151 1 genus 1911556 Sediminispirochaeta smaragdinae 55206 0 1151 1 species 3 genus 0 3100 21 146 1 Spirochaeta 1398 0 species 1 Spirochaeta africana 46355 154 Spirochaeta thermophila species 1 1681 0 157 1 795 Treponema genus 12 22221 0 81028 Treponema brennaborense 1 species 0 2364 species 1 610 0 409322 Treponema pedis 1 species 0 1630 150829 Treponema azotonutricium 1 species 0 3173 221027 Treponema putidum 0 1991 1 species Treponema primitia 88058 Treponema succinifaciens 167 0 5509 1 species Treponema caldarium 215591 1086 0 species 1 Treponema denticola 158 0 1890 1 species species 1 125 0 53435 Treponema paraluiscuniculi 0 2893 1 no rank 2638727 Treponema sp. OMZ 838 1539298 0 2893 1 species 1 species 0 155 160 Treponema pallidum 4150 0 genus 4 Sphaerochaeta 1 399320 4 273376 Sphaerochaeta coccoides species 1 1225 0 species 1 1229 0 1131707 Sphaerochaeta pleomorpha 1131703 Sphaerochaeta globosa species 1 1692 0 0 4919 17 family Borreliaceae 8 1 1643685 Borrelia 21 1 138 0 2531 8 genus Borrelia duttonii 40834 335 0 species 1 species 1 547 0 47466 Borrelia miyamotoi Borrelia hermsii 140 273 0 species 1 Borrelia parkeri 141 0 449 1 species Borrelia recurrentis 44449 288 0 species 1 142 Borrelia turicatae species 1 355 0 Borrelia anserina 143 0 263 1 species 0 2380 8 genus Borreliella 81 1 64895 1 species 0 303 139 Borreliella burgdorferi species 1 378 0 1674146 Borrelia mayonii 1 species 0 276 29518 Borreliella afzelii 64897 Borreliella bissettii 1 species 0 212 species 1 267 0 62088 Borreliella valaisiana Borreliella bavariensis 664662 328 0 species 1 Borreliella garinii 29519 535 0 species 1 1767 0 phylum 5 200938 1767 0 class 5 Chrysiogenetes 1 118001 24 40 189769 1 Chrysiogenales 4 order 0 1743 0 1703 3 family Chrysiogenaceae 3 1 189770 1 393029 29 Desulfurispirillum genus 2 1700 0 1671 0 species 1 Desulfurispirillum indicum 936456 68297 0 1025 4 phylum 203486 1025 0 class 4 Dictyoglomales 1 203487 1 1025 0 order 4 203488 1024 0 family 3 genus 3 1024 0 1 13 2 Dictyoglomus Dictyoglomus turgidum 513050 519 0 species 1 503 0 species 1 Dictyoglomus thermophilum 14 12 phylum 0 9135 508458 class 12 9135 0 1 649775 38 Synergistia 1 649776 49 Synergistales order 11 9097 0 family 10 9048 0 1 649777 133 Synergistaceae 0 1373 2 genus Thermanaerovibrio 24 1 81461 1349 0 species 1 Thermanaerovibrio acidaminovorans 81462 Cloacibacillus 508459 1 14 6230 0 genus 2 Cloacibacillus porcorum 1197717 0 6216 1 species 336260 0 462 1 genus Thermovirga lienii 336261 0 462 1 species Aminobacterium 1 1 81466 0 446 2 genus Aminobacterium colombiense 81468 445 0 species 1 Acetomicrobium 7 1 49894 0 404 2 genus 97477 Acetomicrobium mobile 1 species 0 397 1930617 5 phylum 0 1337 Calditrichae 7 1 1962850 0 1337 5 class 7 1 1962852 Calditrichales 4 order 0 1330 family 3 1323 0 1 1962854 4 Calditrichaceae 2 genus 0 1319 5 1 187144 Caldithrix Caldithrix abyssi 187145 0 1314 1 species 380 clade 0 9157954 1783270 8 phylum 0 6167 142182 class 8 6167 0 219685 1 52 Gemmatimonadetes 6115 0 order 7 Gemmatimonadales 1 219686 163 5952 0 family 6 Gemmatimonadaceae 219687 1 32 3423 0 genus 2 Gemmatirosa 1706036 1 20 Gemmatirosa kalamazoonesis 861299 0 3403 1 species 0 2497 3 genus Gemmatimonas 48 1 173479 173480 Gemmatimonas aurantiaca species 1 1422 0 1379270 Gemmatimonas phototrophica species 1 1027 0 2 phylum 0 728 456828 Candidatus Cloacimonas 1 456826 1 0 728 2 genus 1 species 0 727 456827 Candidatus Cloacimonas acidaminovorans 5 phylum 0 2474 65842 2474 0 class 5 Fibrobacteria 1 204430 13 2461 0 order 4 Fibrobacterales 218872 1 10 Fibrobacteraceae 204431 1 1 2451 0 family 3 genus 2 2450 0 832 1 7 Fibrobacter 2443 0 species 1 Fibrobacter succinogenes 833 9148585 0 clade 365 68336 1090 16975 0 phylum 22 138 1 191410 Chlorobia 22 class 0 16975 16837 0 order 21 Chlorobiales 1 191411 169 family 20 16668 0 1 191412 87 Chlorobiaceae 274493 0 6336 8 no rank 5 genus 0 3931 9 1 1091 Chlorobium 479 0 species 1 Chlorobium chlorochromatii 337090 1096 Chlorobium phaeobacteroides species 1 1440 0 1094 Chlorobium phaeovibrioides 1 species 0 752 Chlorobium limicola 1092 0 1251 1 species genus 3 2405 0 1 1099 24 Pelodictyon Pelodictyon phaeoclathratiforme 34090 0 697 1 species 1684 0 species 1 Pelodictyon luteolum 1100 0 3559 5 genus Prosthecochloris 15 1 1101 2632826 2766 0 no rank 3 0 686 1 species Prosthecochloris sp. HL-130-GSB 1974213 0 701 1 species Prosthecochloris sp. CIB 2401 1868325 Prosthecochloris sp. GSB1 281093 1379 0 species 1 778 0 species 1 Prosthecochloris aestuarii 1102 genus 2 612 0 100715 1 1 Chloroherpeton Chloroherpeton thalassium 100716 0 611 1 species 0 6074 4 genus Chlorobaculum 66 256319 1 1 species 0 2094 274539 Chlorobaculum parvum Chlorobaculum tepidum 1097 1344 0 species 1 Chlorobaculum limnaeum 274537 0 2570 1 species 7 phylum 0 2011 1134404 Ignavibacteria 1 795747 4 2011 0 class 7 2007 0 order 6 Ignavibacteriales 795748 1 2 968 0 family 3 Melioribacteraceae 1 1334117 1 2 genus 0 967 1 1 1134403 Melioribacter Melioribacter roseus 1134405 0 966 1 species family 2 1037 0 1 795749 1 Ignavibacteriaceae 1036 0 genus 1 795750 Ignavibacterium album 591197 1036 0 species 1 phylum 336 9129599 0 976 1 56 Bacteroidetes 58 class 0 67389 184 1 768503 Cytophagia 67205 0 order 57 Cytophagales 1 768507 372 1501348 2 family 0 561 215 0 genus 1 273135 2641185 no rank 1 215 0 0 215 1 species Cardinium endosymbiont of Encarsia pergandiella 249402 1 genus 0 346 281119 281120 Candidatus Amoebophilus asiaticus species 1 346 0 family 17 16698 0 89373 1 47 Cytophagaceae 1 978 4 Cytophaga genus 2 1283 0 species 1 1279 0 985 Cytophaga hutchinsonii 1 107 19 Spirosoma genus 6 7757 0 0 1389 1 species Spirosoma sp. HA7 2057025 1 species 0 1781 1178516 Spirosoma montaniterrae 1 species 0 1498 1379870 Spirosoma radiotolerans species 1 1227 0 1211326 Spirosoma aerolatum Spirosoma rigui 564064 1843 0 species 1 1846 0 genus 2 Fibrella 1 861914 1 no rank 1 1845 0 2620963 species 1 1845 0 1834519 Fibrella sp. ES10-3-2-2 3 319458 1 Leadbetterella 2 genus 0 1241 316068 Leadbetterella byssophila 1 species 0 1238 genus 2 2000 0 1 105 2 Runella 0 1998 1 species Runella slithyformis 106 2 genus 0 2524 2 120831 1 Dyadobacter Dyadobacter fermentans 94254 2522 0 species 1 Persicobacteraceae 1853234 1 1 1745 0 family 3 3 1 59740 Persicobacter 2 genus 0 1744 1741 0 no rank 1 2664020 1085624 Persicobacter sp. JZB09 1 species 0 1741 1 200667 21 Flammeovirgaceae family 4 3725 0 0 2253 1 no rank 340671 Flammeovirgaceae bacterium 311 1257021 0 2253 1 species 2 genus 0 1451 1 59739 1 Flammeovirga 2637820 no rank 1 1450 0 species 1 1450 0 1191459 Flammeovirga sp. MY04 0 5451 10 family Cyclobacteriaceae 14 1 563798 2 genus 0 956 9 1 246875 Algoriphagus 1727163 Algoriphagus sp. M8-2 species 1 947 0 Belliella 232244 1 3 762 0 genus 2 Belliella baltica 232259 0 759 1 species Cyclobacterium 1 68288 21 2096 0 genus 3 species 1 1070 0 104 Cyclobacterium marinum 0 1005 1 species Cyclobacterium amurskyense 320787 10 1 390846 Echinicola 2 genus 0 1623 Echinicola vietnamensis 390884 1613 0 species 1 130 1853232 1 Hymenobacteraceae 16 family 0 36397 0 4147 3 genus Pontibacter 18 1 323449 0 2412 1 species Pontibacter akesuensis 388950 Pontibacter korlensis 400092 1717 0 species 1 genus 4 5143 0 1 1379908 23 Rufibacter Rufibacter tibetensis 512763 1702 0 species 1 2639626 2 no rank 0 3418 1 species 0 1754 1379909 Rufibacter sp. DG15C species 1 1664 0 1379910 Rufibacter sp. DG31D Hymenobacter 245 1 89966 0 26977 8 genus no rank 5 18620 0 2615202 1 species 0 4506 1484118 Hymenobacter sp. PAMC 26628 1 species 0 4685 1356852 Hymenobacter sp. APR13 1385664 Hymenobacter sp. DG25B 1 species 0 2975 Hymenobacter sp. DG25A 1385663 2537 0 species 1 1 species 0 3917 1484116 Hymenobacter sp. PAMC 26554 Hymenobacter sedentarius 1411621 4249 0 species 1 1 species 0 3863 1446467 Hymenobacter swuensis 2762301 0 1108 2 family Marivirga 19 1 869806 0 1108 2 genus 1006 Marivirga tractuosa 1 species 0 1089 1 1937968 5 Bernardetiaceae family 2 1148 0 1937972 0 1143 1 genus 999 Bernardetia litoralis 1 species 0 1143 70 1 117743 Flavobacteriia 149 class 0 168847 Flavobacteriales 112 1 200644 0 168777 148 order 1333713 2 family 0 1097 1097 0 genus 2 Owenweeksia 1 267986 7 1 species 0 1090 253245 Owenweeksia hongkongensis 1 family 0 2 246874 Cryomorphaceae Flavobacteriaceae 1 49546 1712 84300 0 family 105 83612 genus 1 792 0 Psychroflexus torquis 57029 0 792 1 species 178469 genus 1 1345 0 1 species 0 1345 616991 Arenibacter algicola genus 4 1963 0 1 326319 3 Dokdonia 2615033 0 1358 2 no rank 0 826 1 species Dokdonia sp. 4H-3-7-5 983548 1 species 0 532 313590 Dokdonia sp. MED134 1 species 0 602 326320 Dokdonia donghaensis genus 6 4952 0 52959 1 11 Polaribacter species 1 1324 0 1774273 Polaribacter vadi 1 species 0 1296 996801 Polaribacter reichenbachii 196858 3 no rank 0 2321 2058137 Polaribacter sp. ALD11 1 species 0 811 1 species 0 740 1529069 Polaribacter sp. BM10 313598 Polaribacter sp. MED152 species 1 770 0 286104 2 genus 0 1389 2615021 0 1389 2 no rank species 1 851 0 754409 Winogradskyella sp. PG-2 1936080 Winogradskyella sp. J14-2 1 species 0 538 0 2098 2 no rank 61432 1005 0 species 1 Flavobacteriaceae bacterium UJ101 1150389 0 1093 1 species Flavobacteriaceae bacterium 3519-10 531844 Lutibacter 1 358023 1 795 0 genus 2 1 species 0 794 1622118 Lutibacter profundi genus 5 3960 0 1 292691 7 Gramella 1913577 Gramella sp. LPB0144 species 1 670 0 2126553 Gramella sp. SH35 species 1 1206 0 Gramella flava 1486245 1118 0 species 1 Gramella forsetii 411153 0 959 1 species 3168 0 genus 5 Tenacibaculum 1 104267 9 1 species 0 831 1850252 Tenacibaculum todarodis 669041 Tenacibaculum dicentrarchi species 1 647 0 584609 Tenacibaculum jejuense 1 species 0 915 107401 Tenacibaculum maritimum 1 species 0 766 9 genus 0 10366 54 1 237 Flavobacterium 670 0 species 1 Flavobacterium branchiophilum 55197 996 Flavobacterium columnare 1 species 0 1968 Flavobacterium crassostreae 1763534 693 0 species 1 684 0 species 1 Flavobacterium indicum 312277 0 2971 1 species Flavobacterium johnsoniae 986 1306519 Flavobacterium commune species 1 1081 0 Flavobacterium gilvum 1492737 0 1411 1 species species 1 834 0 96345 Flavobacterium psychrophilum genus 1 906 0 261827 1 species 0 906 1736674 Algibacter alginicilyticus 0 642 1 genus 389486 2648869 no rank 1 642 0 642 0 species 1 Sediminicola sp. YIK13 1453352 1204360 1 genus 0 756 Siansivirga zeaxanthinifaciens 762954 756 0 species 1 genus 2 1200 0 1 1209327 2 Flavivirga species 1 1198 0 1803846 Flavivirga eckloniae genus 4 2085 0 1 291183 5 Lacinutrix 2647285 1407 0 no rank 2 Lacinutrix sp. 5H-3-7-4 983544 0 722 1 species 685 0 species 1 Lacinutrix sp. Bg11-31 2057808 species 1 673 0 1486034 Lacinutrix venerupis 0 1995 3 genus Muricauda 31 111500 1 1019 0 species 1 Muricauda lutaonensis 516051 111501 Muricauda ruestringensis species 1 945 0 2 genus 0 871 2 1649495 1 Seonamhaeicola 2622645 1 no rank 0 869 869 0 species 1 Seonamhaeicola sp. S2-3 1936081 336276 595 0 genus 1 2615019 0 595 1 no rank 1 species 0 595 2058135 Olleya sp. Bg11-27 Salegentibacter 3 1 143222 0 1086 2 genus 2633436 1083 0 no rank 1 Salegentibacter sp. T436 1729720 1083 0 species 1 0 1104 1 genus 393005 2069432 Tamlana sp. UJ94 species 1 1104 0 genus 5 3097 0 1 252356 27 Maribacter 1178778 Maribacter cobaltidurans 1 species 0 868 0 2202 3 no rank 2615042 1 species 0 710 313603 Maribacter sp. HTCC2170 777 0 species 1 Maribacter sp. 1_2014MBL_MicDiv 1644130 species 1 715 0 1836467 Maribacter sp. T28 Wenyingzhuangia 1 1518147 1 910 0 genus 2 Wenyingzhuangia fucanilytica 1790137 909 0 species 1 0 657 1 genus 1176327 0 657 1 no rank 2636237 Aureitalea sp. RR4-38 2094025 657 0 species 1 3143 0 genus 4 Cellulophaga 104264 1 8 species 1 1223 0 76594 Cellulophaga baltica 0 920 1 species Cellulophaga algicola 59600 Cellulophaga lytica 979 992 0 species 1 Formosa 3 1 225842 0 1123 3 genus 2644710 1120 0 no rank 2 Formosa sp. Hel1_33_131 1336794 510 0 species 1 Formosa sp. Hel3_A1_48 1336795 0 610 1 species 1 417127 6 Zunongwangia genus 2 1093 0 Zunongwangia profunda 398743 1087 0 species 1 65 1 1016 Capnocytophaga 15 genus 0 17057 327575 Capnocytophaga leadbetteri species 1 1854 0 0 962 1 species Capnocytophaga ochracea 1018 1333 0 species 1 Capnocytophaga canimorsus 28188 45243 Capnocytophaga haemolytica 1 species 0 1237 2640652 0 7032 6 no rank Capnocytophaga sp. oral taxon 323 1705617 1170 0 species 1 species 1 813 0 1945657 Capnocytophaga sp. H2931 717 0 species 1 Capnocytophaga sp. H4358 1945658 1 species 0 1665 1316596 Capnocytophaga sp. oral taxon 878 1316593 Capnocytophaga sp. oral taxon 864 1 species 0 1432 0 1235 1 species Capnocytophaga sp. ChDC OS43 209053 1017 Capnocytophaga gingivalis species 1 794 0 1 species 0 1960 1019 Capnocytophaga sputigena Capnocytophaga cynodegmi 28189 797 0 species 1 1848904 Capnocytophaga stomatis 1 species 0 1023 5 genus 0 6015 65 1 76831 Myroides 3545 0 species 1 Myroides odoratimimus 76832 0 790 1 species Myroides profundi 480520 2642485 0 1615 2 no rank 1 species 0 822 1458492 Myroides sp. ZB35 Myroides sp. A21 1583100 0 793 1 species 629 0 genus 1 216431 313588 Croceibacter atlanticus 1 species 0 629 genus 1 1057 0 2700084 species 1 1057 0 1850246 Lutibacter sp. LPB0138 153265 608 0 genus 1 1 species 0 608 101385 Aequorivita sublithincola 2658 0 genus 5 Nonlabens 1 363408 7 1 species 0 640 319236 Nonlabens sediminis 722 0 species 1 Nonlabens dokdonensis 328515 1289 0 no rank 2 2615035 1 species 0 640 2058134 Nonlabens sp. MB-3u-79 1476901 Nonlabens sp. MIC269 species 1 649 0 2 252306 1 Robiginitalea 2 genus 0 1369 0 1367 1 species Robiginitalea biformata 252307 1104 0 genus 2 Zobellia 112040 1 1 1103 0 species 1 Zobellia galactanivorans 63186 1755828 259 0 family 2 Ichthyobacterium 1 1755829 1 259 0 genus 2 242600 Ichthyobacterium seriolicida 1 species 0 258 0 79483 21 family 2762318 genus 2 2479 0 34084 1 1 Riemerella 2478 0 species 1 Riemerella anatipestifer 34085 Elizabethkingia 68 308865 1 0 11565 6 genus 172045 Elizabethkingia miricola 1 species 0 2552 1452 0 species 1 Elizabethkingia genomosp. 3 1756149 species 1 1755 0 238 Elizabethkingia meningoseptica 1117645 Elizabethkingia anophelis species 1 4328 0 Elizabethkingia genomosp. 4 1756150 1410 0 species 1 2 genus 0 27033 108 1 28250 Ornithobacterium Ornithobacterium rhinotracheale 28251 0 26925 1 species 37811 0 no rank 10 2782232 genus 9 35216 0 59732 1 46 Chryseobacterium 1 species 0 1214 1685010 Chryseobacterium glaciei species 1 2744 0 253 Chryseobacterium indologenes Chryseobacterium gallinarum 1324352 0 24103 1 species Chryseobacterium piperi 558152 1007 0 species 1 no rank 3 4397 0 2593645 Chryseobacterium sp. StRB126 878220 0 1280 1 species 0 1763 1 species Chryseobacterium sp. T16E-39 2015076 1 species 0 1354 1721091 Chryseobacterium sp. IHB B 17019 species 1 1705 0 1265445 Chryseobacterium camelliae 2782228 genus 1 2595 0 1 species 0 2595 536441 Chryseobacterium taklimakanense 1013 0 595 1 genus Weeksella virosa 1014 0 595 1 species 313602 3 no rank 0 505 132 0 genus 1 1940138 1415657 Candidatus Walczuchella monophlebidarum species 1 132 0 6 1 336809 Candidatus Sulcia 2 genus 0 373 1 species 0 367 336810 Candidatus Sulcia muelleri Crocinitomicaceae 11 1 1853230 0 1068 3 family 0 1057 2 genus Fluviicola 14 1 332102 191579 Fluviicola taffensis species 1 1043 0 1951 0 family 10 Blattabacteriaceae 39782 1 11 Blattabacterium 1 34098 35 1940 0 genus 9 0 232 1 species Blattabacterium cuenoti 1653831 Blattabacterium punctulatus 164514 231 0 species 1 no rank 6 1442 0 2647581 species 1 171 0 367488 Blattabacterium sp. (Periplaneta americana) Blattabacterium sp. (Mastotermes darwiniensis) 39768 189 0 species 1 0 233 1 species Blattabacterium sp. (Blatta orientalis) 367806 0 367 1 species Blattabacterium sp. (Blattella germanica) 624186 1 species 0 228 1316444 Blattabacterium sp. (Nauphoeta cinerea) Blattabacterium sp. (Blaberus giganteus) 1186051 0 254 1 species Chitinophagia 22 1 1853228 0 13600 17 class Chitinophagales 1 1853229 24 13578 0 order 16 15 family 0 13554 25 563835 1 Chitinophagaceae 0 3060 3 genus Niabella 2 1 379899 species 1 1487 0 1176587 Niabella ginsenosidivorans Niabella soli 446683 0 1571 1 species genus 2 1171 0 1 1769012 2 Arachidicoccus no rank 1 1169 0 2636138 1850526 Arachidicoccus sp. BS20 species 1 1169 0 genus 3 4102 0 79328 1 11 Chitinophaga 1 species 0 1359 2029983 Chitinophagaceae bacterium 13 79329 Chitinophaga pinensis species 1 2732 0 Filimonas 12 1 649460 0 2084 2 genus Filimonas lacunae 477680 2072 0 species 1 398041 1 9 Flavisolibacter genus 2 940 0 Flavisolibacter tropicus 1492898 931 0 species 1 0 2172 2 genus Niastella 2 1 354354 354356 Niastella koreensis species 1 2170 0 200643 1 252 Bacteroidia class 73 8842562 0 1917 171549 1 Bacteroidales 60 order 0 8833881 family 5 375259 0 1 171550 58 Rikenellaceae 74 239759 1 Alistipes 2 genus 0 372042 Alistipes finegoldii 214856 371968 0 species 1 Mucinivorans 1611681 1 8 3159 0 genus 2 species 1 3151 0 1433126 Mucinivorans hirudinis Porphyromonadaceae 171551 1 31 13529 0 family 4 genus 3 13498 0 1 836 11 Porphyromonas Porphyromonas gingivalis 837 10521 0 species 1 2966 0 species 1 Porphyromonas asaccharolytica 28123 0 2028900 5 no rank 333046 Candidatus Azobacteroides 511434 1 11 1567 0 genus 2 1 species 0 1556 511435 Candidatus Azobacteroides pseudotrichonymphae 909656 2027333 0 genus 3 395944 0 species 1 Bacteroides vulgatus 821 1520887 0 species 1 Bacteroides dorei 357276 376805 Bacteroides salanitronis species 1 110502 0 5 1 2005520 Dysgonamonadaceae 7 family 0 21354 13 1 307628 Petrimonas 2 genus 0 6623 1642646 Petrimonas mucosa species 1 6610 0 Proteiniphilum 25 294702 1 0 10814 2 genus Proteiniphilum saccharofermentans 1642647 10789 0 species 1 Fermentimonas 1 1 1784836 0 3912 2 genus 0 3911 1 species Fermentimonas caenicola 1562970 Tannerellaceae 2005525 1 162 1442344 0 family 7 0 30897 3 genus Tannerella 53 1 195950 Tannerella forsythia 28112 0 19626 1 species 0 11218 1 no rank 2620507 Tannerella sp. oral taxon HOT-286 712710 11218 0 species 1 3 genus 0 1411285 271 375288 1 Parabacteroides 601088 0 species 1 Parabacteroides distasonis 823 2649774 809926 0 no rank 1 1 species 0 809926 2025876 Parabacteroides sp. CT06 22 1 171552 Prevotellaceae 11 family 0 266644 Prevotella 838 1 401 266622 0 genus 10 species 1 8023 0 589436 Prevotella fusca 4460 0 species 1 Prevotella jejuni 1177574 4809 0 species 1 Prevotella melaninogenica 28132 species 1 211199 0 28131 Prevotella intermedia 52227 Prevotella dentalis species 1 13861 0 8130 0 species 1 Prevotella denticola 28129 8029 0 species 1 Prevotella ruminicola 839 2638335 no rank 1 2402 0 652716 Prevotella sp. oral taxon 299 species 1 2402 0 0 5308 1 species Prevotella enoeca 76123 2005523 2 family 0 3842 Paludibacter 1 346096 3 3842 0 genus 2 species 1 3839 0 185300 Paludibacter propionicigenes 0 1880 1 no rank 185291 Bacteroidales bacterium CF 1400053 0 1880 1 species Odoribacteraceae 1853231 1 1 107573 0 family 3 283168 1 14 Odoribacter genus 2 107572 0 Odoribacter splanchnicus 28118 0 107558 1 species 58 1 815 Bacteroidaceae 11 family 0 4349149 125308 1 816 Bacteroides 10 genus 0 4349091 Bacteroides cellulosilyticus 246787 0 1405915 1 species 202835 0 species 1 Bacteroides heparinolyticus 28113 Bacteroides zoogleoformans 28119 169706 0 species 1 species 1 265443 0 47678 Bacteroides caccae 28116 Bacteroides ovatus species 1 644529 0 261889 0 species 1 Bacteroides helcogenes 290053 Bacteroides caecimuris 1796613 274022 0 species 1 1 species 0 424405 818 Bacteroides thetaiotaomicron 817 Bacteroides fragilis species 1 575039 0 Barnesiellaceae 12 1 2005519 0 221490 3 family 221478 0 genus 2 Barnesiella 1 397864 113 397865 Barnesiella viscericola species 1 221365 0 1970189 1 5 Marinilabiliales order 12 8429 0 Salinivirgaceae 1 1 1970190 0 1061 3 family 0 1060 2 genus Salinivirga 3 1970191 1 1057 0 species 1 Salinivirga cyanobacteriivorans 1307839 family 2 1757 0 1 1573805 2 Marinifilaceae 2060722 1 genus 0 1755 1717717 Marinifilaceae bacterium SPP2 species 1 1755 0 0 3883 3 family Prolixibacteraceae 16 1471398 1 1471399 1 15 Draconibacterium genus 2 3867 0 0 3852 1 species Draconibacterium orientale 1168034 family 3 1723 0 1 558415 4 Marinilabiliaceae Alkalitalea 3 1 1193324 0 1719 2 genus 889453 Alkalitalea saponilacus 1 species 0 1716 Bacteroidetes Order II. Incertae sedis 1 1100069 111 9668 0 order 7 Rhodothermaceae 77 1 563843 0 9557 6 family 0 3804 2 genus Rhodothermus 32 1 29548 Rhodothermus marinus 29549 0 3772 1 species 1 no rank 0 3809 1196022 1779382 Rhodothermaceae bacterium RA 1 species 0 3809 0 1867 2 genus Salinibacter 3 146918 1 146919 Salinibacter ruber 1 species 0 1864 31 117747 1 Sphingobacteriia 24 class 0 24161 order 23 24130 0 1 200666 42 Sphingobacteriales 1 84566 44 Sphingobacteriaceae family 22 24088 0 7494 0 genus 6 Sphingobacterium 1 28453 41 0 5971 4 no rank 2609468 1538644 Sphingobacterium sp. ML3W 1 species 0 1105 743722 Sphingobacterium sp. 21 1 species 0 1620 1 species 0 1625 1933220 Sphingobacterium sp. B29 2003121 Sphingobacterium sp. G1-14 1 species 0 1621 Sphingobacterium mizutaii 1010 1482 0 species 1 0 1592 2 genus Solitalea 7 1 929509 Solitalea canadensis 995 1585 0 species 1 84568 no rank 1 1349 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 0 1349 1 species 6 genus 0 7579 72 1 84567 Pedobacter 2628915 1692 0 no rank 1 1727164 Pedobacter sp. PACM 27299 1 species 0 1692 species 1 1322 0 363852 Pedobacter ginsengisoli 1661 0 species 1 Pedobacter heparinus 984 Pedobacter steynii 430522 0 1476 1 species 1356 0 species 1 Pedobacter cryoconitis 188932 2 genus 0 1593 11 1 1649482 Pseudopedobacter 1582 0 species 1 Pseudopedobacter saltans 151895 Mucilaginibacter 423349 1 43 4437 0 genus 4 1 species 0 1051 1234841 Mucilaginibacter sp. BJC16-A31 1 species 0 1649 1550579 Mucilaginibacter gotjawali 2617802 1 no rank 0 1694 Mucilaginibacter sp. PAMC 26640 1300914 1694 0 species 1 3316 0 class 7 Saprospiria 1937959 1 30 6 1936988 1 Saprospirales 6 order 0 3286 2614 0 family 3 Haliscomenobacteraceae 1 1937961 3 2 1 2349 Haliscomenobacter 2 genus 0 2611 Haliscomenobacter hydrossis 2350 2609 0 species 1 family 2 666 0 89374 1 1 Saprospiraceae 1007 665 0 genus 1 1 species 0 665 1008 Saprospira grandis 200930 3145 0 phylum 10 1 68337 17 Deferribacteres class 10 3145 0 191393 1 8 Deferribacterales order 9 3128 0 3120 0 family 8 Deferribacteraceae 191394 1 36 Denitrovibrio 1 117999 7 821 0 genus 2 Denitrovibrio acetiphilus 118000 814 0 species 1 858 0 genus 2 Deferribacter 1 53572 1 857 0 species 1 Deferribacter desulfuricans 197162 545865 0 749 1 genus 477976 Calditerrivibrio nitroreducens 1 species 0 749 Flexistipes 1 2351 9 656 0 genus 2 647 0 species 1 Flexistipes sinusarabici 2352 1783272 clade 1725 14049135 0 Chloroflexi 3 1 200795 0 22640 47 phylum Thermomicrobia 189775 1 32 2361 0 class 9 Thermomicrobiales 189776 1 3 562 0 order 4 Thermomicrobiaceae 1 189777 3 559 0 family 3 0 556 2 genus Thermomicrobium 3 1 499 1 species 0 553 500 Thermomicrobium roseum subclass 4 1767 0 85000 85001 1 42 Sphaerobacterales order 4 1767 0 0 1725 3 suborder 255728 1 85002 24 Sphaerobacteraceae family 3 1725 0 1 2056 21 Sphaerobacter genus 2 1701 0 2057 Sphaerobacter thermophilus species 1 1680 0 class 7 4878 0 1 292625 13 Anaerolineae 1 292629 28 Anaerolineales order 6 4865 0 1 292628 22 Anaerolineaceae family 5 4837 0 6 1 2019482 Brevefilum 2 genus 0 946 940 0 species 1 Brevefilum fermentans 1986204 genus 1 1311 0 233189 species 1 1311 0 167964 Anaerolinea thermophila 1 no rank 0 2558 1324991 2558 0 species 1 Anaerolineaceae bacterium oral taxon 439 1889813 1 1382928 93 Ardenticatenia class 5 4057 0 1 1382929 51 Ardenticatenales order 4 3964 0 1 1382930 25 Ardenticatenaceae family 3 3913 0 3888 0 genus 2 Candidatus Promineofilum 1 1988031 26 0 3862 1 species Candidatus Promineofilum breve 1806508 Dehalococcoidia 14 1 301297 0 4265 9 class 20 1202465 1 Dehalococcoidales 5 order 0 2466 58 1202464 1 Dehalococcoidaceae 4 family 0 2446 2388 0 genus 3 Dehalococcoides 1 61434 8 2057 0 species 1 Dehalococcoides mccartyi 61435 237581 0 323 1 no rank Dehalococcoides sp. UCH007 1522671 323 0 species 1 670486 1 18 Dehalogenimonas genus 3 1785 0 Dehalogenimonas lykanthroporepellens 552810 0 960 1 species 807 0 species 1 Dehalogenimonas formicexedens 1839801 0 5244 11 class Chloroflexia 30 1 32061 10 order 0 5214 30 1 32064 Chloroflexales 1508595 4 suborder 0 2948 family 4 2948 0 1508635 1 10 Roseiflexaceae Roseiflexus 4 1 120961 0 2938 3 genus 0 1438 1 no rank 2609473 1438 0 species 1 Roseiflexus sp. RS-1 357808 120962 Roseiflexus castenholzii species 1 1496 0 0 2236 5 suborder 1508594 5 family 0 2236 2 1 1106 Chloroflexaceae 0 2234 4 genus Chloroflexus 28 1 1107 0 620 1 species Chloroflexus aggregans 152260 1586 0 species 2 Chloroflexus aurantiacus 1 1108 793 480224 Chloroflexus sp. Y-400-fl strain 1 793 0 0 1832 5 class Caldilineae 17 1 475962 14 475963 1 Caldilineales 4 order 0 1815 3 family 0 1801 13 475964 1 Caldilineaceae 19 233191 1 Caldilinea 2 genus 0 1788 1 species 0 1769 133453 Caldilinea aerophila 1859062 no rank 2 584 0 21 1 262406 Thermobaculum 2 genus 0 584 166501 Thermobaculum terrenum species 1 563 0 147 201174 1 Actinobacteria 660 phylum 0 2290437 0 3440 6 class Rubrobacteria 28 1 84995 1 84996 66 Rubrobacterales order 5 3412 0 Rubrobacteraceae 23 84997 1 0 3346 4 family 71 1 42255 Rubrobacter 3 genus 0 3323 1 species 0 1038 42256 Rubrobacter radiotolerans 49319 Rubrobacter xylanophilus species 1 2214 0 no rank 4 917 0 1752188 Actinobacteria bacterium IMCC25003 1848255 324 0 species 1 Actinobacteria bacterium IMCC26103 1848756 189 0 species 1 1848754 Actinobacteria bacterium IMCC19121 1 species 0 232 1848755 Actinobacteria bacterium IMCC26077 species 1 172 0 2061185 0 class 604 Actinobacteria 1 1760 8109 0 1290708 26 order Bifidobacteriales 190 85004 1 0 1290518 25 family Bifidobacteriaceae 9478 1 31953 Bifidobacterium 1 1678 1864 1277941 0 genus 19 Bifidobacterium thermophilum 33905 0 2924 1 species Bifidobacterium bifidum 1681 0 45946 1 species Bifidobacterium breve 1685 0 62689 1 species 35760 Bifidobacterium choerinum 1 species 0 2712 Bifidobacterium coryneforme 1687 1046 0 species 1 Bifidobacterium catenulatum 1 1686 65380 187789 0 species 2 0 122409 1 subspecies Bifidobacterium kashiwanohense 630129 1148 0 species 1 Bifidobacterium indicum 1691 1 species 0 6437 1689 Bifidobacterium dentium 5063 0 species 1 Bifidobacterium scardovii 158787 Bifidobacterium asteroides 1684 1809 0 species 1 0 479384 1 species Bifidobacterium pseudocatenulatum 28026 1 species 0 4268 1694 Bifidobacterium pseudolongum 28025 Bifidobacterium animalis species 1 3010 0 1433 0 species 1 Bifidobacterium actinocoloniiforme 638619 Bifidobacterium angulatum 1683 8672 0 species 1 Bifidobacterium longum 216816 415418 0 species 1 Bifidobacterium adolescentis 1680 0 46329 1 species Gardnerella 1 2701 1 0 1059 2 genus Gardnerella vaginalis 2702 1058 0 species 1 647 0 genus 1 196081 647 0 species 1 Scardovia inopinata 78259 2 genus 0 1393 1 196082 1 Parascardovia 1 species 0 1392 78258 Parascardovia denticolens 147 order 0 143887 1473 1 85006 Micrococcales 724 0 family 3 Dermatophilaceae 1 85018 27 3 1 1862 Dermatophilus 2 genus 0 697 species 1 694 0 1863 Dermatophilus congolensis 1 85023 637 Microbacteriaceae family 49 46558 0 6766 0 genus 6 Clavibacter 1 1573 394 1130 1 28447 Clavibacter michiganensis 5 species 0 6372 0 1135 1 subspecies Clavibacter nebraskensis 31963 subspecies 1 1463 0 31964 Clavibacter sepedonicus 1 subspecies 0 1466 1874630 Clavibacter capsici 33014 Clavibacter insidiosus subspecies 1 1178 0 Cryobacterium 1 69578 47 3352 0 genus 3 1658 0 no rank 1 2649013 1978566 Cryobacterium sp. LW097 species 1 1658 0 species 1 1647 0 670052 Cryobacterium arcticum 1391 0 genus 2 Frondihabitans 1 447237 4 1387 0 no rank 1 2626248 Frondihabitans sp. PAMC 28766 1795630 1387 0 species 1 1655488 3 no rank 0 500 1655489 clade 3 500 0 Rhodoluna 1 529883 3 500 0 genus 3 Rhodoluna lacicola 529884 305 0 species 1 0 192 1 species Candidatus Rhodoluna planktonica 535712 Pontimonas 3 1 1434032 0 301 2 genus 298 0 species 1 Pontimonas salivibrio 1159327 1 110932 46 Leifsonia genus 2 3185 0 1575 Leifsonia xyli species 1 3139 0 13 33886 1 Rathayibacter 3 genus 0 1353 33888 Rathayibacter tritici species 1 994 0 Rathayibacter toxicus 145458 346 0 species 1 Cnuibacter 5 1759331 1 0 1484 2 genus species 1 1479 0 1619308 Cnuibacter physcomitrellae 0 1130 2 genus Microcella 14 337004 1 Microcella alkaliphila 279828 0 1116 1 species 1 genus 0 334 1705353 0 334 1 species Aurantimicrobium minutum 708131 2 genus 0 1745 2 1 33877 Agromyces 453304 Agromyces aureus 1 species 0 1743 0 4236 4 genus Curtobacterium 69 1 2034 69373 Curtobacterium pusillum species 1 1341 0 0 2826 2 no rank 257496 1 species 0 1532 1561023 Curtobacterium sp. MR_MD2014 Curtobacterium sp. BH-2-1-1 1905847 1294 0 species 1 378 1 33882 Microbacterium 14 genus 0 18648 Microbacterium aurum 36805 0 1495 1 species 8 no rank 0 11494 2609290 1714373 Microbacterium sp. No. 7 species 1 1996 0 1 species 0 1146 1696072 Microbacterium sp. CGR1 1 species 0 1629 2103230 Microbacterium sp. str. 'China' 0 1255 1 species Microbacterium sp. 1.5R 1916917 1278 0 species 1 Microbacterium sp. TPU 3598 1938334 1257 0 species 1 Microbacterium sp. XT11 367477 1 species 0 1566 1795053 Microbacterium sp. PAMC 28756 species 1 1367 0 1906742 Microbacterium sp. BH-3-3-3 Microbacterium paludicola 300019 0 1425 1 species 1 species 0 1184 2033 Microbacterium testaceum 162426 Microbacterium hominis 1 species 0 1583 84292 Microbacterium chocolatum species 1 1089 0 2 genus 0 1496 5 1 518733 Microterricola 1491 0 species 1 Microterricola viridarii 412690 Jonesiaceae 3 1 85022 0 378 3 family 43673 1 7 Jonesia genus 2 375 0 1 species 0 368 43674 Jonesia denitrificans 85017 1 145 Promicromonosporaceae family 9 8864 0 2 genus 0 2206 17 1 186188 Xylanimonas Xylanimonas cellulosilytica 186189 0 2189 1 species 3334 0 genus 3 Isoptericola 1 254250 54 1620 0 species 1 Isoptericola variabilis 139208 Isoptericola dokdonensis 372663 1660 0 species 1 genus 3 3179 0 157920 1 66 Cellulosimicrobium 1710 Cellulosimicrobium cellulans species 1 1569 0 2624466 0 1544 1 no rank species 1 1544 0 1980001 Cellulosimicrobium sp. TH-20 1550 0 family 3 Beutenbergiaceae 125316 1 10 27 1 84756 Beutenbergia 2 genus 0 1540 Beutenbergia cavernae 84757 1513 0 species 1 0 1811 3 family Sanguibacteraceae 5 145360 1 1806 0 genus 2 Sanguibacter 1 60919 54 species 1 1752 0 60920 Sanguibacter keddieii 1 85019 21 Brevibacteriaceae family 3 2389 0 33 1 1696 Brevibacterium 2 genus 0 2368 species 1 2335 0 1703 Brevibacterium linens 577468 no rank 1 83 0 2038 0 83 1 genus Tropheryma whipplei 2039 0 83 1 species Micrococcaceae 1 1268 2131 51050 0 family 39 4 genus 0 5295 89 1 57493 Kocuria Kocuria rhizophila 72000 1842 0 species 1 Kocuria flava 446860 1895 0 species 1 species 1 1469 0 71999 Kocuria palustris 1 genus 0 398 1645 Renibacterium salmoninarum 1646 398 0 species 1 1 32207 6 Rothia genus 3 4427 0 648 0 species 1 Rothia dentocariosa 2047 0 3773 1 species Rothia mucilaginosa 43675 genus 4 4981 0 1 1742993 56 Pseudarthrobacter 361575 Pseudarthrobacter phenanthrenivorans 1 species 0 1549 species 1 1739 0 85085 Pseudarthrobacter chlorophenolicus Pseudarthrobacter sulfonivorans 121292 0 1637 1 species genus 2 1809 0 1 596707 17 Sinomonas 0 1792 1 species Sinomonas atrocyanea 37927 Micrococcus 35 1 1269 0 2027 2 genus 0 1992 1 species Micrococcus luteus 1270 genus 2 2043 0 1 1742989 9 Glutamicibacter 256701 Glutamicibacter arilaitensis 1 species 0 2034 574 1663 1 Arthrobacter 15 genus 0 23779 235627 19047 0 no rank 12 1 species 0 1412 1494608 Arthrobacter sp. PAMC 25486 Arthrobacter sp. U41 1849032 0 1829 1 species 1 species 0 1007 1118963 Arthrobacter sp. Rue61a 1 species 0 1639 2079227 Arthrobacter sp. PGP41 1806905 Arthrobacter sp. ZXY-2 1 species 0 1192 1 species 0 1665 290399 Arthrobacter sp. FB24 2217 0 species 1 Arthrobacter sp. YC-RL1 1652545 0 1377 1 species Arthrobacter sp. YN 2020486 Arthrobacter sp. LS16 1690248 2271 0 species 1 1065 0 species 1 Arthrobacter sp. ATCC 21022 1771959 Arthrobacter sp. QXT-31 1357915 0 1778 1 species Arthrobacter sp. ERGS1:01 1704044 0 1595 1 species species 1 2453 0 656366 Arthrobacter alpinus 37928 Arthrobacter crystallopoietes species 1 1705 0 2078575 1 genus 0 596 1618207 Arthrobacter sp. IHBB 11108 species 1 596 0 genus 2 2412 0 1868332 1 11 Neomicrococcus Neomicrococcus aestuarii 556325 2401 0 species 1 0 1152 2 genus Paenarthrobacter 4 1 1742992 1148 0 species 1 Paenarthrobacter aurescens 43663 85020 1 122 Dermabacteraceae family 11 11509 0 Dermabacter 1 36739 7 867 0 genus 2 Dermabacter vaginalis 1630135 0 860 1 species Devriesea 3 472568 1 0 696 2 genus Devriesea agamarum 472569 0 693 1 species 208 43668 1 Brachybacterium 6 genus 0 9824 1879 0 no rank 1 2623841 species 1 1879 0 1903186 Brachybacterium sp. P6-10-X1 0 1758 1 species Brachybacterium sp. VR2415 2017485 1331682 Brachybacterium ginsengisoli species 1 2003 0 Brachybacterium faecium 43669 2116 0 species 1 1 species 0 1860 2017484 Brachybacterium sp. VM2412 54 1 85016 Cellulomonadaceae 6 family 0 6097 0 6043 5 genus Cellulomonas 156 1 1707 Cellulomonas fimi 1708 1732 0 species 1 no rank 1 1299 0 2620175 1299 0 species 1 Cellulomonas sp. PSBB021 2003551 Cellulomonas gilvus 11 1266 0 species 1 0 1590 1 species Cellulomonas flavigena 1711 family 9 6936 0 1 85021 76 Intrasporangiaceae 25 1 267408 Arsenicicoccus 2 genus 0 2406 2381 0 no rank 1 2663846 species 1 2381 0 1658671 Arsenicicoccus sp. oral taxon 190 60 1 53457 Janibacter 2 genus 0 1316 857417 Janibacter indicus 1 species 0 1256 38 1 265976 Serinicoccus 2 genus 0 1869 1 species 0 1831 1758689 Serinicoccus sp. JLT9 Intrasporangium 93 1 53357 0 1269 2 genus 1 species 0 1176 53358 Intrasporangium calvum 145357 1 78 Dermacoccaceae family 7 4465 0 16 57495 1 Dermacoccus 2 genus 0 1440 1274 Dermacoccus nishinomiyaensis 1 species 0 1424 23 1 745364 Luteipulveratus 2 genus 0 1466 1443 0 species 1 Luteipulveratus mongoliensis 571913 46 57499 1 Kytococcus 2 genus 0 1481 1276 Kytococcus sedentarius species 1 1435 0 2294 0 order 4 Kineosporiales 622452 1 2 Kineosporiaceae 64 1 83778 0 2292 3 family 13 1 33981 Kineococcus 2 genus 0 2228 2215 0 species 1 Kineococcus radiotolerans 131568 2 85014 1 Glycomycetales 4 order 0 2448 family 3 2446 0 1 85034 68 Glycomycetaceae 30 283810 1 Stackebrandtia 2 genus 0 2378 2348 0 species 1 Stackebrandtia nassauensis 283811 0 8795 7 order Frankiales 37 85013 1 Frankiaceae 137 74712 1 0 8758 6 family 136 1 1854 Frankia 5 genus 0 8621 Frankia casuarinae 106370 0 1316 1 species 1 no rank 0 2397 2632575 298653 Frankia sp. EAN1pec species 1 2397 0 1 species 0 2168 1859 Frankia alni 0 2604 1 species Frankia inefficax 298654 414714 1 40 Catenulisporales order 4 3756 0 Catenulisporaceae 1 414877 67 3716 0 family 3 3649 0 genus 2 Catenulispora 1 414878 34 1 species 0 3615 304895 Catenulispora acidiphila 52018 no rank 1 348 0 348 0 species 1 Actinobacteria bacterium IMCC26256 1650658 0 6956 8 order Geodermatophilales 26 1 1643682 6930 0 family 7 Geodermatophilaceae 85030 1 141 70 1 88138 Modestobacter 2 genus 0 2601 2531 0 species 1 Modestobacter marinus 477641 1860 1 50 Geodermatophilus genus 2 2385 0 0 2335 1 species Geodermatophilus obscurus 1861 1803 0 genus 2 Blastococcus 1 38501 20 species 1 1783 0 138336 Blastococcus saxobsidens 3368 0 order 12 Candidatus Nanopelagicales 1 2039638 18 2162846 0 3350 11 family genus 4 570 0 2039639 1 4 Candidatus Nanopelagicus 1884634 Candidatus Nanopelagicus limnes 1 species 0 194 Candidatus Nanopelagicus hibericus 1884915 0 141 1 species 1884916 Candidatus Nanopelagicus abundans 1 species 0 231 0 2780 7 genus Candidatus Planktophila 24 1 622681 Candidatus Planktophila vernalis 1884907 0 398 1 species species 1 617 0 1884913 Candidatus Planktophila lacus 586 0 species 1 Candidatus Planktophila dulcis 1884914 0 556 1 species Candidatus Planktophila versatilis 1884905 260 0 species 1 Candidatus Planktophila sulfonica 1884904 species 1 339 0 573600 Candidatus Planktophila limnetica 1643818 0 1544 2 no rank Thermobispora 1 147067 30 1544 0 genus 2 2006 Thermobispora bispora 1 species 0 1514 34 order 0 39852 162 1 85009 Propionibacteriales Nocardioidaceae 292 1 85015 0 13872 13 family genus 2 1796 0 116071 1 11 Micropruina species 1 1785 0 75385 Micropruina glycogenica genus 2 2470 0 1 182639 37 Kribbella Kribbella flavida 182640 0 2433 1 species 1 1839 93 Nocardioides genus 4 5582 0 1805 0 species 1 Nocardioides dokdonensis 450734 0 1764 1 no rank 2615069 Nocardioides sp. JS614 196162 1764 0 species 1 1920 0 species 1 Nocardioides sp. 78 2045452 genus 2 2327 0 1 2044 18 Pimelobacter 0 2309 1 species Pimelobacter simplex 2045 19 2040 1 Aeromicrobium 2 genus 0 1405 Aeromicrobium erythreum 2041 1386 0 species 1 Propionibacteriaceae 402 1 31957 0 25818 20 family 1310 0 genus 2 Microlunatus 1 29404 10 29405 Microlunatus phosphovorus species 1 1300 0 Propionimicrobium 3 1 203133 0 2952 2 genus 2949 0 no rank 1 2633994 Propionimicrobium sp. Marseille-P3275 1871034 2949 0 species 1 3 genus 0 3922 65 1 1743 Propionibacterium species 1 3030 0 1744 Propionibacterium freudenreichii 2608905 no rank 1 827 0 species 1 827 0 671223 Propionibacterium sp. oral taxon 193 genus 5 8762 0 72763 1 68 Tessaracoccus Tessaracoccus aquimaris 1332264 0 2361 1 species 1610493 Tessaracoccus flavus 1 species 0 1963 1 no rank 0 2492 2635419 1 species 0 2492 1909732 Tessaracoccus sp. T2.5-30 1878 0 species 1 Tessaracoccus flavescens 399497 0 2910 2 genus Acidipropionibacterium 9 1 1912215 2901 0 species 1 Acidipropionibacterium acidipropionici 1748 genus 1 1467 0 2801844 1750 Pseudopropionibacterium propionicum 1 species 0 1467 Cutibacterium 1 1912216 30 4093 0 genus 4 33011 Cutibacterium granulosum 1 species 0 1064 species 1 1902 0 33010 Cutibacterium avidum 1097 0 species 1 Cutibacterium acnes 1747 order 20 28198 0 2037 1 48 Actinomycetales 28150 0 family 19 Actinomycetaceae 1 2049 4676 0 3563 2 genus Mobiluncus 93 1 2050 Mobiluncus curtisii 2051 0 3470 1 species 644 0 genus 2 Arcanobacterium 1 28263 1 1 species 0 643 28264 Arcanobacterium haemolyticum 1 1654 279 Actinomyces genus 9 14554 0 1960083 Actinomyces gaoshouyii 1 species 0 1589 1912795 Actinomyces sp. VUL4_3 species 1 454 0 species 1 1583 0 1852377 Actinomyces pacaensis 2609248 no rank 3 6280 0 1 species 0 1815 1851395 Actinomyces sp. Chiba101 2081702 Actinomyces sp. oral taxon 897 1 species 0 1888 species 1 2577 0 712122 Actinomyces sp. oral taxon 414 Actinomyces oris 544580 1938 0 species 1 111015 Actinomyces radicidentis species 1 2431 0 2529408 0 1190 1 genus 52773 Actinomyces meyeri 1 species 0 1190 Trueperella 1 1069494 12 2606 0 genus 2 0 2594 1 species Trueperella pyogenes 1661 0 917 2 genus Actinotignum 2 1 1653174 1 species 0 915 59505 Actinotignum schaalii Acidothermales 1643683 1 1 670 0 order 4 669 0 family 3 Acidothermaceae 1 85032 10 Acidothermus 1 28048 1 0 659 2 genus Acidothermus cellulolyticus 28049 0 658 1 species 42 order 0 68184 205 85010 1 Pseudonocardiales Pseudonocardiaceae 2070 1 1108 67979 0 family 41 1 65496 196 Actinoalloteichus genus 6 8474 0 Actinoalloteichus hymeniacidonis 340345 1491 0 species 1 0 3445 2 no rank 2644606 2072503 Actinoalloteichus sp. AHMU CJ021 species 1 1764 0 1612551 Actinoalloteichus sp. GBA129-24 1 species 0 1681 Actinoalloteichus hoggarensis 1470176 0 1644 1 species 1 species 0 1698 1612552 Actinoalloteichus sp. ADI127-7 3331 0 genus 2 Saccharothrix 2071 1 24 1 species 0 3307 103731 Saccharothrix espanaensis 2 genus 0 3394 30 43356 1 Kutzneria species 1 3364 0 43357 Kutzneria albida Actinosynnema 1 40566 186 7203 0 genus 3 3699 0 species 1 Actinosynnema pretiosum 42197 0 3318 1 species Actinosynnema mirum 40567 Pseudonocardia 1847 1 302 13453 0 genus 8 1 species 0 2571 240495 Pseudonocardia dioxanivorans 6 no rank 0 10580 2619320 1572 0 species 1 Pseudonocardia sp. EC080625-04 1096868 1689 0 species 1 Pseudonocardia sp. EC080619-01 1096856 1641402 Pseudonocardia sp. HH130629-09 1 species 0 1844 species 1 1686 0 1688404 Pseudonocardia sp. EC080610-09 0 1787 1 species Pseudonocardia sp. HH130630-07 1690815 1 species 0 2002 445576 Pseudonocardia sp. AL041005-10 Prauserella 1 142577 4 1488 0 genus 2 species 1 1484 0 530584 Prauserella marina 1 1851 4 Saccharomonospora genus 2 1092 0 Saccharomonospora viridis 1852 1088 0 species 1 Amycolatopsis 291 1813 1 0 17938 7 genus 31958 Amycolatopsis orientalis species 1 4554 0 5101 0 no rank 2 2618356 1896961 Amycolatopsis sp. AA4 species 1 2622 0 1911175 Amycolatopsis sp. BJA-103 1 species 0 2479 2340 0 species 1 Amycolatopsis methanolica 1814 species 1 2359 0 208439 Amycolatopsis japonica 33910 Amycolatopsis mediterranei 1 species 0 3293 165301 1 18 Lentzea genus 2 2944 0 2926 0 species 1 Lentzea guizhouensis 1586287 4 1 2029 Kibdelosporangium 2 genus 0 2542 2538 0 species 1 Kibdelosporangium phytohabitans 860235 Alloactinosynnema 1 674734 11 2124 0 genus 2 0 2113 1 no rank 2636053 2113 0 species 1 Alloactinosynnema sp. L-07 1653480 16 1 1835 Saccharopolyspora 2 genus 0 2888 2872 0 species 1 Saccharopolyspora erythraea 1836 Streptosporangiales 126 85012 1 0 21757 16 order 65 2012 1 Thermomonosporaceae 3 family 0 3540 3475 0 genus 2 Thermomonospora 1 2019 73 2020 Thermomonospora curvata 1 species 0 3402 family 7 8866 0 83676 1 140 Nocardiopsaceae genus 4 7553 0 1 2013 168 Nocardiopsis species 1 2144 0 280236 Nocardiopsis gilva species 1 3288 0 2014 Nocardiopsis dassonvillei 53437 Nocardiopsis alba species 1 1953 0 Thermobifida 7 83677 1 0 1173 2 genus 1166 0 species 1 Thermobifida fusca 2021 5 family 0 9225 149 1 2004 Streptosporangiaceae genus 2 3754 0 1 2000 49 Streptosporangium 2001 Streptosporangium roseum species 1 3705 0 genus 2 5322 0 1 83681 55 Nonomuraea 2593643 no rank 1 5267 0 Nonomuraea sp. ATCC 55076 1909395 0 5267 1 species order 82 203813 0 1 85011 472 Streptomycetales Streptomycetaceae 2062 1 1376 203341 0 family 81 0 12315 5 genus Kitasatospora 127 2063 1 Kitasatospora aureofaciens 1894 2855 0 species 1 Kitasatospora setae 2066 0 3346 1 species no rank 1 3682 0 2633591 species 1 3682 0 2018025 Kitasatospora sp. MMS16-BH015 0 2305 1 species Kitasatospora albolonga 68173 genus 75 189650 0 1 1883 6994 Streptomyces 1 species 0 2648 1642299 Streptomyces alfalfae 0 1535 1 species Streptomyces pratensis 1169025 4212 0 species 1 Streptomyces venezuelae 54571 Streptomyces xinghaiensis 1038928 1960 0 species 1 1 species 0 2071 1616117 Streptomyces formicae species 1 2097 0 1914 Streptomyces lavendulae 285473 Streptomyces rubrolavendulae species 1 2002 0 75293 Streptomyces autolyticus species 1 3091 0 species 1 3011 0 92644 Streptomyces malaysiensis 0 2738 1 species Streptomyces scabiei 1930 Streptomyces sp. XZHG99 2049881 1634 0 species 1 1912 Streptomyces hygroscopicus species 1 6002 0 Streptomyces xiamenensis 408015 2470 0 species 1 Streptomyces alboflavus 67267 0 2563 1 species Streptomyces griseochromogenes 68214 2373 0 species 1 1950 Streptomyces peucetius species 1 1987 0 38300 Streptomyces pristinaespiralis species 1 2254 0 1 species 0 2031 1935 Streptomyces violaceoruber 2310 0 species 1 Streptomyces glaucescens 1907 species 1 2358 0 68570 Streptomyces albulus Streptomyces sp. S10(2016) 1783515 2377 0 species 1 Streptomyces cyaneogriseus 68192 2126 0 species 1 68249 Streptomyces pactum 1 species 0 4091 0 2195 1 species Streptomyces leeuwenhoekii 1437453 Streptomyces violaceusniger 68280 0 2653 1 species species 1 6387 0 47763 Streptomyces lydicus 1477431 species group 2 4336 0 1902 Streptomyces coelicolor species 1 2242 0 42239 Streptomyces sampsonii 1 species 0 2094 Streptomyces pluripotens 1355015 0 1534 1 species 1888 Streptomyces albus 1 species 0 4755 24 no rank 0 54188 2593676 2062 0 species 1 Streptomyces sp. Mg1 465541 Streptomyces sp. WAC00288 2094021 0 1882 1 species 2362 0 species 1 Streptomyces sp. FR-008 206662 species 1 1888 0 1984801 Streptomyces sp. CLI2509 Streptomyces sp. PAMC 26508 1265601 1781 0 species 1 species 1 2550 0 444103 Streptomyces sp. CNQ-509 1725411 Streptomyces sp. CdTB01 species 1 2820 0 1 species 0 2268 2135430 Streptomyces sp. P3 3247 0 species 1 Streptomyces sp. M56 1495638 Streptomyces sp. RTd22 1841249 0 2869 1 species 1812480 Streptomyces sp. fd1-xmd species 1 2216 0 species 1 1560 0 862751 Streptomyces sp. SirexAA-E 1837283 Streptomyces sp. S8 1 species 0 2104 1961713 Streptomyces sp. MOE7 species 1 2146 0 2853 0 species 1 Streptomyces sp. CMB-StM0423 2059884 0 2312 1 species Streptomyces sp. Sge12 1972846 species 1 1907 0 234612 Streptomyces sp. TN58 1561022 Streptomyces sp. CCM_MD2014 species 1 2178 0 species 1 2370 0 1849967 Streptomyces sp. SAT1 Streptomyces sp. 3211 1964449 2188 0 species 1 1649184 Streptomyces sp. CFMR 7 1 species 0 1907 Streptomyces sp. 4F 1751294 1997 0 species 1 species 1 1931 0 1661694 Streptomyces sp. Tue 6075 1262452 Streptomyces sp. 769 species 1 2790 0 629295 species group 2 4228 0 1482596 0 2234 1 species subgroup 1 species 0 2234 1911 Streptomyces griseus species subgroup 1 1994 0 1482558 1 species 0 1994 1908 Streptomyces globisporus Streptomyces puniciscabiei 164348 0 2760 1 species 1 species 0 2006 1940 Streptomyces albireticuli 379067 Streptomyces bingchenggensis 1 species 0 3298 Streptomyces cattleya 29303 2873 0 species 1 Streptomyces niveus 193462 0 2002 1 species 1904 0 species 1 Streptomyces avermitilis 33903 362257 Streptomyces vietnamensis 1 species 0 2628 Streptomyces clavuligerus 1901 2179 0 species 1 1889 Streptomyces ambofaciens species 1 1937 0 species 1 2045 0 1916 Streptomyces lividans 2347 0 species 1 Streptomyces chartreusis 1969 species 1 2365 0 146923 Streptomyces parvulus species 1 2897 0 1915 Streptomyces lincolnensis 0 2397 1 species Streptomyces noursei 1971 Streptomyces fulvissimus 68202 0 1587 1 species Streptomyces reticuli 1926 2578 0 species 1 Streptomyces collinus 42684 2116 0 species 1 553510 Streptomyces gilvosporeus species 1 2520 0 85007 1 1554 Corynebacteriales order 163 189024 0 family 3 878 0 1 316606 9 Segniliparaceae genus 2 869 0 286801 1 16 Segniliparus 1 species 0 853 286802 Segniliparus rotundus Tsukamurellaceae 85028 1 21 3206 0 family 4 genus 3 3185 0 1 2060 55 Tsukamurella Tsukamurella paurometabola 2061 0 1160 1 species species 1 1970 0 57704 Tsukamurella tyrosinosolvens Mycobacteriaceae 265 1 1762 0 69072 57 family 1073531 2 genus 0 2328 1788 Mycobacterium terrae species 1 1090 0 Mycobacterium sinense 875328 0 1238 1 species 670516 0 6181 5 genus 36809 Mycobacterium abscessus 1 species 0 2336 0 941 1 species Mycobacterium chelonae 1774 Mycobacterium immunogenum 83262 863 0 species 1 Mycobacterium stephanolepidis 1520670 1029 0 species 1 species 1 1012 0 1578165 Mycobacterium saopaulense 13 genus 0 20725 1866885 Mycobacterium thermoresistibile 1797 1492 0 species 1 1623 0 species 1 Mycobacterium vaccae 1810 1 species 0 1643 110539 Mycobacterium vanbaalenii Mycobacterium gilvum 1804 0 1767 1 species Mycobacterium neoaurum 1795 1176 0 species 1 1462 0 species 1 Mycobacterium chubuense 1800 1831 0 species 1 Mycobacterium phlei 1771 Mycobacterium fortuitum 1766 1300 0 species 1 1 species 0 1970 1772 Mycobacterium smegmatis 0 2092 1 species Mycobacterium aurum 1791 134601 Mycobacterium goodii 1 species 0 1668 1 species 0 1118 36814 Mycobacterium rhodesiae 1583 0 species 1 Mycobacterium litorale 758802 Hoyosella 2 1 697025 0 804 2 genus species 1 802 0 639313 Hoyosella subflava 3030 1 1763 Mycobacterium 34 genus 0 38769 77643 2854 0 species group 4 3 species 0 2175 829 1773 1 Mycobacterium tuberculosis Mycobacterium africanum 33894 655 0 biotype 1 0 691 1 biotype Mycobacterium bovis 1765 679 0 species 1 Mycobacterium canettii 78331 120793 species group 8 8569 0 0 879 1 species Mycobacterium marseillense 701042 1694 0 species 1 Mycobacterium colombiense 339268 1764 Mycobacterium avium species 1 3068 0 Mycobacterium paraintracellulare 1138383 0 420 1 species species 4 2508 0 1767 1 672 Mycobacterium intracellulare Mycobacterium indicus pranii 35617 0 393 1 subspecies 222805 Mycobacterium chimaera 1 subspecies 0 959 1 subspecies 0 484 1203599 Mycobacterium yongonense Mycobacterium marinum 1781 1139 0 species 1 261524 Mycobacterium liflandii 1 species 0 880 species 1 355 0 1769 Mycobacterium leprae species 1 1228 0 1768 Mycobacterium kansasii species group 1 1234 0 2249310 1 species 0 1234 722731 Mycobacterium shigaense Mycobacterium haemophilum 29311 759 0 species 1 482462 Mycobacterium dioxanotrophicus species 1 1706 0 1809 Mycobacterium ulcerans 1 species 0 1082 15933 0 no rank 13 2642494 Mycobacterium sp. PYR15 2051552 0 1481 1 species 0 1319 1 species Mycobacterium sp. WY10 1920667 1570328 Mycobacterium sp. NRRL B-3805 species 1 1176 0 species 1 1373 0 212767 Mycobacterium sp. JS623 1545728 Mycobacterium sp. EPa45 1 species 0 1158 0 1121 1 species Mycobacterium sp. MCS 164756 1682113 Mycobacterium sp. YC-RL4 1 species 0 1595 Mycobacterium sp. JLS 164757 0 1272 1 species 0 1132 1 species Mycobacterium sp. VKM Ac-1817D 1273687 189918 Mycobacterium sp. KMS 1 species 0 1172 0 1749 1 species Mycobacterium sp. djl-10 1879023 1561223 Mycobacterium sp. QIA-37 1 species 0 904 species 1 481 0 1168287 Mycobacterium sp. MOTT36Y 13 1 85029 Dietziaceae 4 family 0 2133 21 1 37914 Dietzia 3 genus 0 2120 2617939 no rank 1 1172 0 Dietzia sp. oral taxon 368 712270 1172 0 species 1 species 1 927 0 499555 Dietzia timorensis 31 family 0 45721 367 85025 1 Nocardiaceae 28076 0 genus 23 Rhodococcus 1 1827 1248 1829 Rhodococcus rhodochrous 1 species 0 921 1 species 0 787 334542 Rhodococcus qingshengii species 1 1042 0 1833 Rhodococcus erythropolis Rhodococcus jostii 132919 1501 0 species 1 Rhodococcus opacus 37919 3405 0 species 1 Rhodococcus fascians 1828 1006 0 species 1 103816 Rhodococcus pyridinivorans 1 species 0 1223 0 1360 1 species Rhodococcus hoagii 43767 1 species 0 1587 1830 Rhodococcus ruber 12088 0 no rank 12 192944 601 0 species 1 Rhodococcus sp. BH4 1807790 Rhodococcus sp. 008 1723645 0 627 1 species species 1 998 0 1653479 Rhodococcus sp. PBTS 2 1 species 0 1224 1564114 Rhodococcus sp. B7740 Rhodococcus sp. 2G 1570939 942 0 species 1 Rhodococcus sp. H-CA8f 1727214 0 904 1 species 1 species 0 1139 1653478 Rhodococcus sp. PBTS 1 1965 0 species 1 Rhodococcus sp. WB1 1033922 0 542 1 species Rhodococcus sp. WMMA185 679318 935199 Rhodococcus sp. p52 species 1 1081 0 1805827 Rhodococcus sp. MTM3W5.2 1 species 0 1347 species 1 718 0 1045808 Rhodococcus sp. YL-1 191292 Rhodococcus aetherivorans species 1 1908 0 1 1817 330 Nocardia genus 7 17278 0 0 1744 1 species Nocardia nova 37330 2478 0 species 1 Nocardia terpenica 455432 1 species 0 3788 135487 Nocardia cyriacigeorgica 2320 0 species 1 Nocardia farcinica 37329 2599 0 species 1 Nocardia seriolae 37332 Nocardia brasiliensis 37326 0 4019 1 species 697024 0 652 2 no rank 0 652 2 genus Lawsonella 11 1847725 1 641 0 species 1 Lawsonella clevelandensis 1528099 1 85026 158 Gordoniaceae family 9 9423 0 Gordonia 207 1 2053 0 9265 8 genus 84595 Gordonia polyisoprenivorans species 1 1371 0 Gordonia phthalatica 1136941 1304 0 species 1 1255 0 species 1 Gordonia iterans 1004901 1 species 0 1464 2055 Gordonia terrae 2657482 no rank 2 2731 0 2059875 Gordonia sp. YC-JH1 1 species 0 1219 Gordonia sp. KTR9 337191 0 1512 1 species 2054 Gordonia bronchialis species 1 933 0 Corynebacteriaceae 1653 1 433 56385 0 family 52 Corynebacterium 1 1716 1423 55952 0 genus 51 Corynebacterium falsenii 108486 0 1203 1 species Corynebacterium doosanense 1121358 1362 0 species 1 146827 Corynebacterium simulans species 1 1373 0 1697 Corynebacterium ammoniagenes species 1 887 0 Corynebacterium resistens 258224 0 553 1 species 1 species 0 495 35757 Corynebacterium cystitidis 136857 Corynebacterium testudinoris species 1 1075 0 1 species 0 1665 1718 Corynebacterium glutamicum species 1 907 0 161899 Corynebacterium singulare 1 species 0 749 161895 Corynebacterium phocae 1 species 0 352 35755 Corynebacterium kutscheri Corynebacterium casei 160386 645 0 species 1 species 1 785 0 161896 Corynebacterium camporealensis 43771 Corynebacterium urealyticum 1 species 0 1197 482 0 species 1 Corynebacterium mustelae 571915 28028 Corynebacterium flavescens species 1 744 0 786 0 species 1 Corynebacterium callunae 1721 1072256 Corynebacterium uterequi 1 species 0 1259 510 0 species 1 Corynebacterium pseudotuberculosis 1719 2 no rank 0 1613 2624378 880 0 species 1 Corynebacterium sp. ATCC 6931 1487956 species 1 733 0 702967 Corynebacterium sp. NML98-0116 225326 Corynebacterium halotolerans species 1 1601 0 species 1 1224 0 203263 Corynebacterium aquilae Corynebacterium humireducens 1223514 1624 0 species 1 Corynebacterium striatum 43770 2014 0 species 1 Corynebacterium ulcerans 65058 0 958 1 species 349751 Corynebacterium marinum 1 species 0 1802 1231000 Corynebacterium lactis 1 species 0 1039 Corynebacterium epidermidicanis 1050174 511 0 species 1 1 species 0 841 92706 [Brevibacterium] flavum 156978 Corynebacterium imitans 1 species 0 1118 Corynebacterium kroppenstedtii 161879 0 623 1 species 1113 0 species 1 Corynebacterium terpenotabidum 89154 1 species 0 966 187491 Corynebacterium glaucum 1087 0 species 1 Corynebacterium aurimucosum 169292 1705 Corynebacterium stationis species 1 757 0 948 0 species 1 Corynebacterium diphtheriae 1717 335 0 species 1 Corynebacterium crudilactis 1652495 1128 0 species 1 Corynebacterium ureicelerivorans 401472 Corynebacterium argentoratense 42817 459 0 species 1 Corynebacterium glyciniphilum 1404244 1105 0 species 1 1230998 Corynebacterium frankenforstense species 1 1822 0 Corynebacterium vitaeruminis 38305 0 2634 1 species Corynebacterium variabile 1727 1582 0 species 1 Corynebacterium maris 575200 1299 0 species 1 Corynebacterium deserti 1408191 1104 0 species 1 species 1 1994 0 38289 Corynebacterium jeikeium 1 species 0 1012 191610 Corynebacterium atypicum species 1 1221 0 152794 Corynebacterium efficiens Corynebacterium sphenisci 191493 1966 0 species 1 1 85008 121 Micromonosporales order 20 33652 0 0 33531 19 family Micromonosporaceae 510 1 28056 Verrucosispora 84593 20 0 genus 1 118 1 673534 Plantactinospora 4 genus 0 7530 no rank 3 7412 0 2631981 2504 0 species 1 Plantactinospora sp. BB1 2071627 species 1 2436 0 2108470 Plantactinospora sp. BC1 2024580 Plantactinospora sp. KBS50 1 species 0 2472 6 genus 0 14565 243 1865 1 Actinoplanes 196914 Actinoplanes friuliensis species 1 2879 0 2626549 no rank 3 8581 0 134676 Actinoplanes sp. SE50/110 species 1 2652 0 Actinoplanes sp. SE50 2033844 2652 0 species 1 3277 0 species 1 Actinoplanes sp. N902-109 649831 Actinoplanes missouriensis 1866 0 2862 1 species 1 168694 21 Salinispora genus 3 2862 0 168695 Salinispora tropica 1 species 0 1177 1 species 0 1664 168697 Salinispora arenicola Micromonospora 1873 1 133 8044 0 genus 4 2617518 0 2885 1 no rank 1 species 0 2885 648999 Micromonospora sp. L5 47850 Micromonospora aurantiaca 1 species 0 2879 2147 0 species 1 Verrucosispora maris 1003110 Nakamurellales 1643684 1 4 2374 0 order 4 41 85031 1 Nakamurellaceae 3 family 0 2370 53460 1 19 Nakamurella genus 2 2329 0 Nakamurella multipartita 53461 0 2310 1 species 622450 1448 0 order 3 1448 0 family 3 Actinopolysporaceae 1 622451 14 1434 0 genus 2 Actinopolyspora 1 1849 15 Actinopolyspora erythraea 414996 0 1419 1 species 907 1 84998 Coriobacteriia 33 class 0 219211 0 109431 18 order Eggerthellales 967 1 1643822 0 108464 17 family Eggerthellaceae 16621 1643826 1 0 15312 2 genus Adlercreutzia 10 1 447020 Adlercreutzia equolifaciens 446660 15302 0 species 1 3679 0 genus 2 Denitrobacterium 79603 1 13 species 1 3666 0 79604 Denitrobacterium detoxificans 2 genus 0 3932 1 1981050 1 Phoenicibacter 1 species 0 3931 1944646 Phoenicibacter massiliensis 2 genus 0 8000 16 84108 1 Slackia 1 species 0 7984 84110 Slackia heliotrinireducens 873 0 genus 2 Cryptobacterium 1 84162 6 species 1 867 0 84163 Cryptobacterium curtum 182 84111 1 Eggerthella 3 genus 0 27745 species 1 23155 0 84112 Eggerthella lenta 4408 0 no rank 1 2648737 502558 Eggerthella sp. YY7918 species 1 4408 0 644652 1 117 Gordonibacter genus 3 32302 0 Gordonibacter urolithinfaciens 1335613 0 21028 1 species species 1 11157 0 1841863 Gordonibacter massiliensis order 14 108873 0 84999 1 432 Coriobacteriales family 6 85190 0 1 84107 1207 Coriobacteriaceae 2914 0 genus 2 Coriobacterium 1 33870 4 Coriobacterium glomerans 33871 0 2910 1 species 102106 1 26 Collinsella genus 2 74922 0 Collinsella aerofaciens 74426 0 74896 1 species 84113 1 no rank 0 6147 1 species 0 6147 1531429 Coriobacteriaceae bacterium 68-1-3 Atopobiaceae 1 1643824 303 23251 0 family 7 0 1388 1 genus 2767353 1382 Atopobium parvulum 1 species 0 1388 170 1 133925 Olsenella 4 genus 0 21554 1805478 Olsenella sp. Marseille-P2300 species 1 10702 0 133926 Olsenella uli 1 species 0 6671 no rank 1 4011 0 2638792 712411 Olsenella sp. oral taxon 807 1 species 0 4011 6 0 genus 1 Atopobium 1380 5 class 0 3358 22 1 1497346 Thermoleophilia 145 1 588673 Solirubrobacterales 4 order 0 3336 0 3191 3 family Conexibacteraceae 31 1 320583 genus 2 3160 0 1 191494 112 Conexibacter 0 3048 1 species Conexibacter woesei 191495 Acidimicrobiia 5 1 84992 0 2179 7 class order 6 2174 0 84993 1 71 Acidimicrobiales 2 family 0 1582 2448023 genus 2 1582 0 682522 1 13 Ilumatobacter 0 1569 1 species Ilumatobacter coccineus 467094 Acidimicrobiaceae 84994 1 19 521 0 family 3 Acidimicrobium 22 53634 1 0 502 2 genus species 1 480 0 53635 Acidimicrobium ferrooxidans 67819 phylum 5 1147 0 1 1663419 9 Fimbriimonadia class 5 1147 0 0 1138 4 order Fimbriimonadales 8 1 1663425 3 family 0 1130 3 1663426 1 Fimbriimonadaceae Fimbriimonas 1 1005038 7 1127 0 genus 2 Fimbriimonas ginsengisoli 1005039 0 1120 1 species 1297 phylum 36 46832 0 1 188787 336 Deinococci class 36 46832 0 15 order 0 27894 347 1 118964 Deinococcales 231 183710 1 Deinococcaceae 14 family 0 27547 0 27316 13 genus Deinococcus 427 1298 1 0 2550 1 species Deinococcus soli Cha et al. 2016 1309411 0 2662 1 species Deinococcus actinosclerus 1768108 Deinococcus proteolyticus 55148 2380 0 species 1 0 1736 1 species Deinococcus deserti 310783 species 1 1528 0 432329 Deinococcus peraridilitoris Deinococcus radiodurans 1299 2197 0 species 1 1815 0 species 1 Deinococcus geothermalis 68909 2623546 0 2132 1 no rank species 1 2132 0 2080419 Deinococcus sp. NW-56 species 1 1558 0 1182568 Deinococcus puniceus 309887 Deinococcus maricopensis 1 species 0 2208 0 2998 1 species Deinococcus swuensis 1182571 502394 Deinococcus gobiensis species 1 3125 0 204 68933 1 Thermales 17 order 0 16967 0 16763 16 family Thermaceae 125 1 188786 1 270 300 Thermus genus 8 9714 0 788 0 species 1 Thermus brockianus 56956 274 Thermus thermophilus species 1 2491 0 Thermus scotoductus 37636 0 807 1 species 56957 Thermus oshimai 1 species 0 1362 0 1515 1 species Thermus aquaticus 271 2619321 1236 0 no rank 1 species 1 1236 0 1111069 Thermus sp. CCB_US3_UF1 1 species 0 1215 456163 Thermus parvatiensis 3 genus 0 3250 42 1 65551 Meiothermus Meiothermus ruber 277 0 1894 1 species Meiothermus silvanus 52022 0 1314 1 species 0 2564 2 genus Oceanithermus 14 208447 1 Oceanithermus profundus 187137 0 2550 1 species 0 1110 2 genus Marinithermus 6 186191 1 1 species 0 1104 186192 Marinithermus hydrothermalis 2762275 3 order 0 1635 12 1 332247 Trueperaceae 3 family 0 1635 1623 0 genus 2 Truepera 1 332248 8 0 1615 1 species Truepera radiovictrix 332249 0 43468 101 phylum Tenericutes 9 544448 1 713063 0 3268 2 no rank 1911684 Tenericutes bacterium MO-XQ species 1 1673 0 Tenericutes bacterium MZ-XQ 1911683 1595 0 species 1 39 31969 1 Mollicutes 96 class 0 39020 7 1 186329 Acholeplasmatales 13 order 0 6303 Acholeplasmataceae 1 2146 14 6296 0 family 12 Acholeplasma 84 2147 1 0 4676 5 genus 1251 0 species 1 Acholeplasma palmae 38986 Acholeplasma laidlawii 2148 1020 0 species 1 61635 Acholeplasma brassicae species 1 1006 0 1315 0 species 1 Acholeplasma oculi 35623 0 1606 6 genus Candidatus Phytoplasma 43 33926 1 85632 213 0 species group 1 59748 Candidatus Phytoplasma australiense species 1 213 0 species group 1 320 0 85630 37692 Candidatus Phytoplasma mali species 1 320 0 85620 species group 3 1030 0 363 0 species 1 Maize bushy stunt phytoplasma 202462 100379 Onion yellows phytoplasma 1 species 0 391 276 0 species 1 Aster yellows witches'-broom phytoplasma 229545 order 43 14898 0 1 2085 25 Mycoplasmatales family 42 14873 0 1 2092 40 Mycoplasmataceae 2129 genus 2 722 0 1 species 0 350 2130 Ureaplasma urealyticum 134821 Ureaplasma parvum species 1 372 0 2767358 0 4826 12 genus Mycoplasma californicum 2113 298 0 species 1 1 species 0 715 28903 Mycoplasma bovis 171284 Mycoplasma cynos 1 species 0 341 2094 Mycoplasma arginini species 1 393 0 2109 Mycoplasma synoviae 1 species 0 290 0 310 1 species Mycoplasma pulmonis 2107 2112 Mycoplasma bovigenitalium species 1 453 0 29553 Mycoplasma bovirhinis species 1 345 0 483 0 species 1 Mycoplasma canis 29555 48003 Mycoplasma pullorum 1 species 0 283 Mycoplasma agalactiae 2110 437 0 species 1 Mycoplasma fermentans 2115 478 0 species 1 Mycoplasma 173 2093 1 0 9285 27 genus 1 species 0 331 2100 Mycoplasma hyorhinis 2097 Mycoplasma genitalium species 1 116 0 Mycoplasma haemofelis 29501 0 65 1 species Mycoplasma mobile 2118 371 0 species 1 2128 Mycoplasma flocculare species 1 104 0 Mycoplasma suis 57372 0 201 1 species 0 571 1 species Mycoplasma yeatsii 51365 2096 Mycoplasma gallisepticum species 1 340 0 984991 Mycoplasma parvum 1 species 0 112 1 species 0 549 2098 Mycoplasma hominis 138 0 species 1 Mycoplasma wenyonii 65123 Mycoplasma putrefaciens 2123 381 0 species 1 0 371 1 species Mycoplasma crocodyli 50052 86660 Mycoplasma dispar 1 species 0 330 0 318 1 species Mycoplasma hyopneumoniae 2099 352 0 species 1 Mycoplasma arthritidis 2111 2683645 571 0 no rank 1 1 species 0 571 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) Mycoplasma bovoculi 45362 0 180 1 species 2545 0 species group 3 656088 0 1194 1 species Mycoplasma mycoides 2102 2095 Mycoplasma capricolum species 1 682 0 669 0 species 1 Mycoplasma leachii 2105 91 0 species 1 Mycoplasma haemocanis 136241 Mycoplasma ovis 171632 70 0 species 1 0 522 1 species Mycoplasma penetrans 28227 Mycoplasma canadense 29554 0 402 1 species Mycoplasma pneumoniae 2104 0 81 1 species 24 186328 1 Entomoplasmatales 39 order 0 17780 1 33925 9 Entomoplasmataceae family 14 5939 0 Mesoplasma 46239 1 166 4113 0 genus 8 138853 Mesoplasma lactucae 1 species 0 801 species 1 719 0 225999 Mesoplasma syrphidae 216427 Mesoplasma chauliocola 1 species 0 355 0 351 1 species Mesoplasma tabanidae 219745 2151 Mesoplasma florum 1 species 0 889 0 355 1 species Mesoplasma entomophilum 2149 324078 Mesoplasma coleopterae 1 species 0 477 40 1 46238 Entomoplasma 5 genus 0 1817 species 1 369 0 214888 Entomoplasma luminosum Entomoplasma freundtii 74700 253 0 species 1 451 0 species 1 Entomoplasma somnilux 215578 81459 Entomoplasma melaleucae 1 species 0 704 24 family 0 11817 51 2131 1 Spiroplasmataceae 0 11766 23 genus Spiroplasma 486 1 2132 Spiroplasma apis 2137 351 0 species 1 0 511 1 species Spiroplasma citri 2133 1 species 0 486 216945 Spiroplasma syrphidicola 0 570 1 species Spiroplasma floricola 216937 216944 Spiroplasma sabaudiense species 1 586 0 1 species 0 889 2145 Spiroplasma taiwanense 495 0 species 1 Spiroplasma corruscae 216934 403 0 species 1 Spiroplasma kunkelii 47834 0 465 1 species Spiroplasma cantharicola 362837 0 547 1 species Spiroplasma turonicum 216946 Spiroplasma mirum 2144 404 0 species 1 Spiroplasma eriocheiris 315358 568 0 species 1 Spiroplasma diminutum 216936 0 526 1 species species 1 501 0 2139 Spiroplasma clarkii 2136 Spiroplasma monobiae 1 species 0 442 216942 Spiroplasma litorale species 1 548 0 1 species 0 482 216938 Spiroplasma helicoides 984 0 no rank 2 2637901 species 1 492 0 1898044 Spiroplasma sp. TU-14 0 492 1 species Spiroplasma sp. NBRC 100390 1914410 1114980 Spiroplasma atrichopogonis species 1 409 0 216933 Spiroplasma chrysopicola 1 species 0 395 216935 Spiroplasma culicicola 1 species 0 718 2799557 2 no rank 0 1171 1912503 1 4 Candidatus Izimaplasma genus 2 1171 0 2624196 1 no rank 0 1167 1541959 Candidatus Izimaplasma sp. HR1 species 1 1167 0 1798711 0 68478 150 clade Cyanobacteria 20 1 1117 0 68478 150 phylum 1890505 order 3 525 0 2 1 1890528 Chroococcidiopsidaceae 3 family 0 525 2 genus 0 523 7 1 54298 Chroococcidiopsis Chroococcidiopsis thermalis 54299 0 516 1 species no rank 1 242 0 1983111 1 species 0 242 718217 cyanobacterium endosymbiont of Epithemia turgida 33398 0 order 55 Synechococcales 1890424 1 436 Leptolyngbyaceae 1890438 1 32 2927 0 family 6 0 2895 5 genus Leptolyngbya 11 1 47251 0 2367 3 no rank 2650499 1080068 Leptolyngbya sp. O-77 species 1 1498 0 0 467 1 species Leptolyngbya sp. NIES-3755 1752064 1 species 0 402 111781 Leptolyngbya sp. PCC 7376 1184 Leptolyngbya boryana 1 species 0 517 Synechococcaceae 1 1890426 123 24067 0 family 33 146785 genus 1 412 0 Thermosynechococcus elongatus 146786 0 412 1 species Dactylococcopsis 1 13034 3 419 0 genus 2 416 0 species 1 Dactylococcopsis salina 292566 17159 0 genus 26 Synechococcus 1 1129 377 species 1 575 0 32046 Synechococcus elongatus 2626047 15763 0 no rank 23 1 species 0 840 84588 Synechococcus sp. WH 8102 Synechococcus sp. JA-2-3B'a(2-13) 321332 1167 0 species 1 32051 Synechococcus sp. WH 7803 species 1 650 0 375 0 species 1 Synechococcus sp. PCC 73109 374982 1827144 Synechococcus sp. NIES-970 1 species 0 402 1 species 0 899 585423 Synechococcus sp. KORDI-49 Synechococcus sp. PCC 6312 195253 254 0 species 1 1 species 0 886 110662 Synechococcus sp. CC9605 Synechococcus sp. PCC 7002 32049 315 0 species 1 1 species 0 807 29410 Synechococcus sp. WH 8103 0 277 1 species Synechococcus sp. CC9311 64471 0 1812 1 species Synechococcus sp. JA-3-3Ab 321327 1 species 0 397 374981 Synechococcus sp. PCC 7003 0 975 1 species Synechococcus sp. RCC307 316278 0 339 1 species Synechococcus sp. PCC 8807 195248 0 385 1 species Synechococcus sp. CC9902 316279 Synechococcus sp. WH 8109 166314 0 823 1 species 585425 Synechococcus sp. KORDI-52 1 species 0 869 0 504 1 species Synechococcus sp. PCC 7502 1173263 780 0 species 1 Synechococcus sp. KORDI-100 1280380 362 0 species 1 Synechococcus sp. PCC 7117 195498 Synechococcus sp. UTEX 2973 1350461 621 0 species 1 1916956 Synechococcus sp. SynAce01 species 1 1024 0 33070 Synechococcus lividus species 1 444 0 5954 0 genus 3 Cyanobium 1 167375 116 2627006 no rank 1 3197 0 1851505 Cyanobium sp. NIES-981 species 1 3197 0 species 1 2641 0 59930 Cyanobium gracile 2 family 0 324 1890436 2 genus 0 324 6 1 1152 Pseudanabaena no rank 1 318 0 2593292 1 species 0 318 82654 Pseudanabaena sp. PCC 7367 1890429 656 0 family 2 genus 2 656 0 155977 1 6 Acaryochloris 650 0 species 1 Acaryochloris marina 155978 family 2 711 0 2303730 0 711 2 genus Halomicronema 4 170610 1 Halomicronema hongdechloris 1209493 707 0 species 1 4 1 1213 Prochloraceae 5 family 0 3123 Prochlorococcus 1 1218 17 3119 0 genus 4 1219 Prochlorococcus marinus 1 species 0 2595 2627481 2 no rank 0 507 1 species 0 272 1501268 Prochlorococcus sp. MIT 0604 Prochlorococcus sp. MIT 0801 1501269 235 0 species 1 1890428 1154 0 family 4 0 1154 4 genus Synechocystis 18 1 1142 3 no rank 0 1136 2640012 species 1 484 0 1147 Synechocystis sp. PCC 6714 1 species 0 326 2116702 Synechocystis sp. IPPAS B-1465 1148 Synechocystis sp. PCC 6803 species 1 326 0 1301283 44 subclass 0 14220 order 20 5925 0 1 1150 31 Oscillatoriales Gomontiellaceae 1 1892255 9 619 0 family 2 241421 genus 1 610 0 1 species 0 610 241425 Crinalium epipsammum 0 1268 5 family Microcoleaceae 1 1 1892252 1 1 1205 Trichodesmium 2 genus 0 749 748 0 species 1 Trichodesmium erythraeum 1206 Microcoleus 1 1 44471 0 518 2 genus 1 no rank 0 517 2642155 Microcoleus sp. PCC 7113 1173027 517 0 species 1 1 1892254 10 Oscillatoriaceae family 6 1888 0 Oscillatoria 1 1158 4 1295 0 genus 3 Oscillatoria acuminata 118323 575 0 species 1 482564 Oscillatoria nigro-viridis 1 species 0 716 0 583 2 genus Moorea 2 1 1155738 species 1 581 0 1155739 Moorea producens Coleofasciculaceae 1892251 1 8 1565 0 family 3 0 1557 2 genus Geitlerinema 2 1 63132 no rank 1 1555 0 2648775 1 species 0 1555 1173025 Geitlerinema sp. PCC 7407 Cyanothecaceae 1 1892249 14 554 0 family 3 genus 2 540 0 1 43988 22 Cyanothece 2649277 no rank 1 518 0 Cyanothece sp. PCC 7425 395961 518 0 species 1 order 24 8295 0 1 1118 4 Chroococcales family 4 1667 0 1890449 1 9 Microcystaceae 0 1658 3 genus Microcystis 8 1 1125 574 0 no rank 1 2643300 1967666 Microcystis sp. MC19 species 1 574 0 1126 Microcystis aeruginosa 1 species 0 1076 2300 0 family 7 Chroococcaceae 1 1890464 6 genus 1 529 0 268175 2648896 no rank 1 529 0 Chondrocystis sp. NIES-4102 2005460 529 0 species 1 Geminocystis 1 669357 7 1374 0 genus 3 no rank 2 1367 0 2625037 species 1 774 0 1615909 Geminocystis sp. NIES-3708 593 0 species 1 Geminocystis sp. NIES-3709 1617448 1 102231 6 Gloeocapsa genus 2 391 0 2623012 no rank 1 385 0 species 1 385 0 1173026 Gloeocapsa sp. PCC 7428 4 1 1890450 Aphanothecaceae 9 family 0 3254 263510 0 415 1 genus 2546360 415 0 species 1 Cyanothece sp. ATCC 51142 43989 0 415 1 strain 2 genus 0 856 2546365 0 856 2 species 2546366 Cyanothece sp. PCC 8802 395962 413 0 strain 1 1 strain 0 443 41431 Cyanothece sp. PCC 8801 2 no rank 0 401 92682 genus 2 401 0 76023 1 2 Halothece 2632878 399 0 no rank 1 65093 Halothece sp. PCC 7418 1 species 0 399 1 genus 0 220 1453359 Candidatus Atelocyanobacterium thalassa 713887 0 220 1 species 28070 1358 0 genus 2 2546356 832 0 species 1 Cyanothece sp. PCC 7424 65393 0 832 1 strain 0 526 1 species 2546359 strain 1 526 0 497965 Cyanothece sp. PCC 7822 Cyanobacteriaceae 1 1890452 1 1070 0 family 3 Cyanobacterium 1 102234 9 1069 0 genus 2 1060 0 species 1 Cyanobacterium aponinum 379064 15200 0 order 34 Nostocales 1 1161 39 0 1001 3 family Rivulariaceae 11 1185 1 2 genus 0 990 18 373984 1 Rivularia 2676603 0 972 1 no rank species 1 972 0 373994 Rivularia sp. PCC 7116 2661849 0 4184 8 family 1 1186 50 Calothrix genus 8 4184 0 0 532 1 species Calothrix parietina 32054 3602 0 no rank 6 2619626 99598 Calothrix sp. PCC 7507 species 1 573 0 2005461 Calothrix sp. NIES-4101 1 species 0 690 0 1009 1 species Calothrix sp. NIES-4071 2005469 1954171 Calothrix sp. NIES-2098 1 species 0 480 Calothrix sp. NIES-3974 2005462 0 340 1 species 1337936 Calothrix sp. 336/3 species 1 510 0 1219117 1 no rank 0 622 622 0 species 1 Nostocales cyanobacterium HT-58-2 1940762 family 18 8765 0 1162 1 31 Nostocaceae 1 1177 99 Nostoc genus 10 5856 0 2593658 0 3977 7 no rank Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 717 0 species 1 Nostoc sp. PCC 7524 28072 477 0 species 1 Nostoc sp. PCC 7120 103690 0 567 1 species 1618022 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1 species 0 687 Nostoc sp. NIES-3756 1751286 521 0 species 1 1869241 Nostoc sp. CENA543 species 1 573 0 Nostoc sp. PCC 7107 317936 435 0 species 1 1306274 Nostoc flagelliforme species 1 1034 0 272131 Nostoc punctiforme species 1 746 0 3 genus 0 1002 7 1 264688 Trichormus species 1 492 0 1164 Trichormus azollae 264691 Trichormus variabilis 1 species 0 503 1876 0 genus 4 Anabaena 1 1163 13 0 516 1 species Anabaena cylindrica 1165 no rank 2 1347 0 2619674 1 species 0 552 1647413 Anabaena sp. WA102 0 795 1 species Anabaena sp. 90 46234 Hapalosiphonaceae 1 1892263 11 589 0 family 3 1 1190 2 Fischerella genus 2 578 0 0 576 1 no rank 494603 1 species 0 576 1752063 Fischerella sp. NIES-3754 order 6 1493 0 52604 4 family 0 1093 4 1 1890498 Dermocarpellaceae genus 3 1089 0 102115 1 3 Stanieria Stanieria cyanosphaera 102116 0 705 1 species 1 no rank 0 381 2642663 1 species 0 381 1807358 Stanieria sp. NIES-3757 family 2 400 0 1890500 Pleurocapsa 1 1 44474 0 400 2 genus Pleurocapsa minor 54308 0 399 1 species Gloeobacteria 1 307596 64 3380 0 class 6 41 307595 1 Gloeobacterales 5 order 0 3316 family 4 3275 0 1890422 1 26 Gloeobacteraceae 1 33071 26 Gloeobacter genus 3 3249 0 1 species 0 1442 1416614 Gloeobacter kilaueensis 0 1781 1 species Gloeobacter violaceus 33072 Firmicutes 379 1239 1 0 11575549 724 phylum no rank 2 2695 0 33974 1930845 1 42 Ndongobacter genus 2 2695 0 0 2653 1 species Ndongobacter massiliensis 1871025 no rank 1 1323 0 84086 0 1323 1 species endosymbiont 'TC1' of Trimyema compressum 243899 32086 0 class 19 Tissierellia 1737404 1 22 0 31025 16 order Tissierellales 871 1 1737405 12 family 0 27693 9182 1570339 1 Peptoniphilaceae 0 2212 2 genus Parvimonas 36 543311 1 species 1 2176 0 33033 Parvimonas micra 0 2760 3 genus Anaerococcus 16 1 165779 Anaerococcus prevotii 33034 1473 0 species 1 1271 0 species 1 Anaerococcus mediterraneensis 1870984 1 1161127 3 Murdochiella genus 2 9647 0 Murdochiella vaginalis 1852373 0 9644 1 species Finegoldia 7 1 150022 0 2504 2 genus 1260 Finegoldia magna 1 species 0 2497 0 1388 2 genus Peptoniphilus 26 1 162289 0 1362 1 no rank 2637196 1912856 Peptoniphilus sp. ING2-D1G 1 species 0 1362 3 family 0 2461 8 2042895 1 Gottschalkiaceae Gottschalkia 1 1505664 2 2453 0 genus 2 0 2451 1 species Gottschalkia acidurici 1556 1737407 1039 0 no rank 2 2 genus 0 1039 23 1 1582879 Ezakiella 0 1016 1 species Ezakiella massiliensis 1852374 Bacilli 1 91061 379 759489 0 class 434 Lactobacillales 186826 1 5726 405725 0 order 165 Leuconostocaceae 31 1 81850 0 7388 18 family Leuconostoc 1 1243 75 4332 0 genus 9 2685106 no rank 1 377 0 1 species 0 377 979982 Leuconostoc sp. C2 species 1 462 0 255248 Leuconostoc garlicum Leuconostoc lactis 1246 526 0 species 1 Leuconostoc mesenteroides 1245 1153 0 species 1 Leuconostoc citreum 33964 390 0 species 1 Leuconostoc kimchii 136609 0 450 1 species species 1 537 0 1244 Leuconostoc gelidum 1252 Leuconostoc carnosum species 1 362 0 genus 6 2400 0 46255 1 9 Weissella 0 487 1 species Weissella paramesenteroides 1249 1 species 0 416 759620 Weissella ceti 1 species 0 489 1631871 Weissella jogaejeotgali 0 460 1 species Weissella cibaria 137591 0 539 1 species Weissella koreensis 165096 1 46254 2 Oenococcus genus 2 625 0 1247 Oenococcus oeni species 1 623 0 0 6638 11 family Carnobacteriaceae 18 186828 1 3 genus 0 1614 20 1470540 1 Jeotgalibaca no rank 1 913 0 2621505 1 species 0 913 1903686 Jeotgalibaca sp. PTS2502 708126 Jeotgalibaca dankookensis 1 species 0 681 Carnobacterium 1 2747 8 3853 0 genus 5 Carnobacterium maltaromaticum 2751 1155 0 species 1 257487 1774 0 no rank 2 1564681 Carnobacterium sp. CP1 1 species 0 926 Carnobacterium sp. 17-4 208596 848 0 species 1 147709 Carnobacterium inhibens species 1 916 0 genus 2 1153 0 1 191769 2 Marinilactibacillus 2632303 1151 0 no rank 1 Marinilactibacillus sp. 15R 1911586 0 1151 1 species 8 family 0 6062 9 1 186827 Aerococcaceae Aerococcus 1 1375 177 6053 0 genus 7 species 1 1103 0 87541 Aerococcus christensenii 0 1376 1 species Aerococcus urinae 1376 1 species 0 696 128944 Aerococcus urinaehominis Aerococcus sanguinicola 119206 0 999 1 species Aerococcus urinaeequi 51665 905 0 species 1 species 1 797 0 1377 Aerococcus viridans 442 33958 1 Lactobacillaceae 58 family 0 66154 2767881 2 genus 0 974 species 1 485 0 53444 Lactobacillus lindneri 0 489 1 species Lactobacillus sanfranciscensis 1625 2767893 0 1785 3 genus species 1 463 0 1138822 Lactobacillus curieae species 1 889 0 1581 Lactobacillus buchneri Lactobacillus parabuchneri 152331 0 433 1 species 0 420 1 genus 2767890 Lactobacillus hokkaidonensis 1193095 0 420 1 species 2742598 genus 3 3396 0 Lactobacillus reuteri 1598 1352 0 species 1 1050 0 species 1 Lactobacillus mucosae 97478 994 0 species 1 Lactobacillus fermentum 1613 4823 0 genus 1 2767876 1603 Lactobacillus amylophilus 1 species 0 4823 1 genus 0 637 2767892 1 species 0 637 240427 Lactobacillus paracollinoides 1 1578 2512 Lactobacillus genus 16 21580 0 0 1428 1 species Lactobacillus gasseri 1596 Lactobacillus johnsonii 33959 0 3553 1 species species 1 695 0 1600 Lactobacillus acetotolerans 1 species 0 468 83683 Lactobacillus amylolyticus 1 species 0 2963 1584 Lactobacillus delbrueckii Lactobacillus acidophilus 1579 750 0 species 1 0 668 1 species Lactobacillus kefiranofaciens 267818 species 1 1573 0 1587 Lactobacillus helveticus 1847 0 no rank 4 2620435 0 480 1 species Lactobacillus sp. CBA3606 2099789 0 384 1 species Lactobacillus sp. D1501 2108362 0 507 1 species Lactobacillus sp. CBA3605 2099788 Lactobacillus sp. wkB8 1545702 0 476 1 species 1 species 0 1180 52242 Lactobacillus gallinarum 944 0 species 1 Lactobacillus jensenii 109790 1604 Lactobacillus amylovorus species 1 2999 0 Pediococcus 14 1 1253 0 4083 6 genus 1 species 0 529 114090 Pediococcus inopinatus 1 species 0 722 51663 Pediococcus damnosus 1 species group 0 1240 1670797 1254 Pediococcus acidilactici species 1 1240 0 Pediococcus claussenii 187452 610 0 species 1 1 species 0 968 1255 Pediococcus pentosaceus genus 3 1864 0 2767886 0 561 1 species Lactobacillus zymae 267363 637971 Lactobacillus koreensis 1 species 0 486 species 1 817 0 1580 Lactobacillus brevis 2767879 4904 0 genus 6 Lactobacillus alimentarius 1602 0 834 1 species Lactobacillus allii 1847728 802 0 species 1 392416 Lactobacillus crustorum species 1 685 0 682 0 species 1 Lactobacillus ginsenosidimutans 1007676 species 1 997 0 1074467 Lactobacillus heilongjiangensis 0 904 1 species Lactobacillus farciminis 1612 3 genus 0 4516 2759736 1 species 0 1555 1597 Lactobacillus paracasei 1242 0 species 1 Lactobacillus rhamnosus 47715 1 species 0 1719 1582 Lactobacillus casei genus 2 1414 0 2767889 species 1 875 0 1610 Lactobacillus coryniformis 375175 Lactobacillus backii species 1 539 0 0 1821 2 genus 2767885 species 1 822 0 28038 Lactobacillus curvatus 1599 Lactobacillus sakei species 1 999 0 502 0 genus 1 2767877 Lactobacillus kunkeei 148814 502 0 species 1 2767842 2394 0 genus 3 Lactobacillus plantarum 1590 0 1364 1 species 60520 Lactobacillus paraplantarum 1 species 0 375 1589 Lactobacillus pentosus species 1 655 0 2767887 4 genus 0 10599 1 species 0 2224 1601 Lactobacillus agilis Lactobacillus ruminis 1623 0 4643 1 species 89059 Lactobacillus acidipiscis 1 species 0 794 species 1 2938 0 1624 Lactobacillus salivarius Streptococcaceae 4646 1 1300 0 255409 49 family Lactococcus 8 1 1357 0 9065 5 genus Lactococcus piscium 1364 0 701 1 species Lactococcus garvieae 1363 1590 0 species 1 6121 0 species 1 Lactococcus lactis 1358 1366 Lactococcus raffinolactis 1 species 0 645 7036 1 1301 Streptococcus 43 genus 0 241698 Streptococcus mutans 1309 0 1082 1 species 1942 0 species 1 Streptococcus gallolyticus 315405 0 1127 1 species Streptococcus parauberis 1348 Streptococcus suis 1307 36264 0 species 1 1 species 0 4136 1326 Streptococcus acidominimus 1 species 0 936 45634 Streptococcus cristatus no rank 7 12823 0 2608887 Streptococcus sp. oral taxon 431 712633 855 0 species 1 1 species 0 711 1319 Streptococcus sp. 'group B' 759 0 species 1 Streptococcus sp. NPS 308 1902136 Streptococcus sp. A12 1759399 2048 0 species 1 species 1 3861 0 1839799 Streptococcus sp. FDAARGOS_192 1156433 Streptococcus sp. I-P16 species 1 2353 0 1 species 0 2236 1156431 Streptococcus sp. I-G2 Streptococcus infantarius 102684 0 5061 1 species 1 species 0 621 1814128 Streptococcus halotolerans 1313 Streptococcus pneumoniae species 1 2331 0 59310 Streptococcus macedonicus species 1 652 0 1 species 0 1480 1305 Streptococcus sanguinis 1346 Streptococcus iniae species 1 1636 0 Streptococcus pyogenes 1314 2828 0 species 1 1888195 Streptococcus himalayensis 1 species 0 475 Streptococcus marmotae 1825069 946 0 species 1 1 species 0 2297 1335 Streptococcus equinus 0 4771 1 species Streptococcus lutetiensis 150055 1 species 0 521 82348 Streptococcus pluranimalium Streptococcus oralis 1303 2428 0 species 1 1318 Streptococcus parasanguinis species 1 4872 0 1811193 Streptococcus pantholopis 1 species 0 1097 257758 Streptococcus pseudopneumoniae 1 species 0 712 1 species 0 2326 1302 Streptococcus gordonii 3033 0 species 1 Streptococcus thermophilus 1308 0 63541 3 species group 671232 1 species 0 15375 76860 Streptococcus constellatus 46198 0 species 1 Streptococcus anginosus 1328 1968 0 species 1 Streptococcus intermedius 1338 species 1 14573 0 1304 Streptococcus salivarius species 1 3122 0 28037 Streptococcus mitis 45806 0 species 1 Streptococcus agalactiae 1311 119603 2 species group 0 2723 0 1837 1 species Streptococcus equi 1336 1334 Streptococcus dysgalactiae species 1 886 0 1349 Streptococcus uberis species 1 821 0 6928 0 species 1 Streptococcus pasteurianus 197614 751 0 species 1 Streptococcus merionis 400065 874 0 no rank 1 263855 1 species 0 874 1993866 Lactobacillales bacterium 19 family 0 57474 88 1 81852 Enterococcaceae 52658 0 genus 12 Enterococcus 1 1350 3618 Enterococcus faecium 1352 0 29219 1 species 37734 Enterococcus casseliflavus 1 species 0 780 Enterococcus mundtii 53346 1071 0 species 1 no rank 3 2802 0 2608891 species 1 839 0 2057791 Enterococcus sp. CR-Ec1 2060306 Enterococcus sp. FDAARGOS_163 species 1 883 0 Enterococcus sp. FDAARGOS_375 2060307 1080 0 species 1 417368 Enterococcus thailandicus 1 species 0 936 species 1 1565 0 53345 Enterococcus durans Enterococcus hirae 1354 1507 0 species 1 0 1367 1 species Enterococcus wangshanyuanii 2005703 1351 Enterococcus faecalis species 1 9793 0 1 genus 0 891 33969 33970 Melissococcus plutonius 1 species 0 891 2 genus 0 1633 7 1 51668 Tetragenococcus species 1 1626 0 51669 Tetragenococcus halophilus genus 3 2204 0 1 2737 13 Vagococcus 0 910 1 species Vagococcus penaei 633807 519472 Vagococcus teuberi 1 species 0 1281 order 268 353385 0 1385 1 884 Bacillales family 2 1343 0 186821 1 2 Sporolactobacillaceae 663587 1341 0 no rank 1 1 species 0 1341 85683 [Bacillus] selenitireducens Paenibacillaceae 186822 1 355 107190 0 family 46 genus 4 5069 0 1 55080 51 Brevibacillus 54913 Brevibacillus formosus species 1 1312 0 1465 Brevibacillus laterosporus 1 species 0 1800 1393 Brevibacillus brevis 1 species 0 1906 no rank 3 2596 0 85151 genus 3 2596 0 1 55079 10 Aneurinibacillus no rank 1 1104 0 2642329 0 1104 1 species Aneurinibacillus sp. XH2 1450761 Aneurinibacillus soli 1500254 0 1482 1 species 0 4469 2 genus Thermobacillus 20 1 76632 0 4449 1 species Thermobacillus composti 377615 Paenibacillus 783 1 44249 0 94701 36 genus 189426 Paenibacillus odorifer 1 species 0 1672 185978 0 33284 13 no rank 1536775 Paenibacillus sp. FSL H7-0737 species 1 1400 0 Paenibacillus sp. FSL P4-0081 1536769 0 3914 1 species species 1 3234 0 1536774 Paenibacillus sp. FSL H7-0357 0 3609 1 species Paenibacillus sp. FSL R5-0912 1536771 0 2715 1 species Paenibacillus sp. JDR-2 324057 1 species 0 2468 481743 Paenibacillus sp. Y412MC10 0 3825 1 species Paenibacillus sp. FSL R7-0273 1536772 0 1478 1 species Paenibacillus sp. lzh-N1 2069255 0 2953 1 species Paenibacillus sp. 32O-W 1695218 0 3128 1 species Paenibacillus sp. FSL R7-0331 1536773 0 1822 1 species Paenibacillus sp. BIHB4019 1870819 Paenibacillus sp. FSL R5-0345 1536770 1385 0 species 1 Paenibacillus sp. IHBB 10380 1566358 1353 0 species 1 0 2628 1 species Paenibacillus ihbetae 1870820 1756 0 species 1 Paenibacillus terrae 159743 189425 Paenibacillus graminis 1 species 0 3262 0 3291 1 species Paenibacillus borealis 160799 Paenibacillus larvae 1464 1683 0 species 1 1 species 0 1656 172713 Paenibacillus kribbensis 0 1780 1 species Paenibacillus xylanexedens 528191 5105 0 species 1 Paenibacillus mucilaginosus 61624 2044880 1 species group 0 3365 483937 Paenibacillus riograndensis species 1 3365 0 44251 Paenibacillus durus 1 species 0 4978 59893 Paenibacillus peoriae 1 species 0 1586 species 1 2939 0 365617 Paenibacillus sabinae 162209 Paenibacillus naphthalenovorans species 1 1720 0 species 1 2531 0 1462996 Paenibacillus yonginensis 0 5826 1 species Paenibacillus polymyxa 1406 169760 Paenibacillus stellifer species 1 3566 0 0 2420 1 species Paenibacillus bovis 1616788 Paenibacillus beijingensis 1126833 0 2675 1 species 1108 0 species 1 Paenibacillus crassostreae 1763538 Paenibacillus donghaensis 414771 0 3744 1 species 1178515 Paenibacillus swuensis 1 species 0 1343 0 43211 41 family Staphylococcaceae 2384 1 90964 1 45669 4 Salinicoccus genus 2 1308 0 407035 Salinicoccus halodurans species 1 1304 0 genus 1 531 0 2005363 1 species 0 531 1849491 Auricoccus indicus 35420 0 genus 33 Staphylococcus 1 1279 933 Staphylococcus sciuri 1296 0 1024 1 species 1 species 0 694 70258 Staphylococcus piscifermentans 1288 Staphylococcus xylosus 1 species 0 1401 0 835 1 species Staphylococcus saprophyticus 29385 1294 Staphylococcus muscae 1 species 0 539 1 species 0 966 1292 Staphylococcus warneri Staphylococcus succinus 61015 0 1146 1 species Staphylococcus nepalensis 214473 958 0 species 1 species 1 685 0 170573 Staphylococcus pettenkoferi Staphylococcus kloosii 29384 815 0 species 1 1020 0 species 1 Staphylococcus equorum 246432 155085 Staphylococcus lutrae species 1 678 0 985002 Staphylococcus argenteus species 1 894 0 Staphylococcus felis 46127 0 840 1 species Staphylococcus aureus 1280 3928 0 species 1 species 1 662 0 985762 Staphylococcus agnetis Staphylococcus pasteuri 45972 0 1958 1 species species 1 643 0 1284 Staphylococcus hyicus 1 species 0 918 70255 Staphylococcus condimenti species 1 931 0 1283 Staphylococcus haemolyticus 1 species 0 1828 283734 Staphylococcus pseudintermedius species 1 861 0 28035 Staphylococcus lugdunensis species 1 969 0 308354 Staphylococcus simiae species 1 976 0 1295 Staphylococcus schleiferi Staphylococcus epidermidis 1282 0 1443 1 species 0 1016 1 species Staphylococcus carnosus 1281 91994 824 0 no rank 1 824 0 species 1 Staphylococcus sp. AntiMn-1 1715860 883 0 species 1 Staphylococcus hominis 1290 Staphylococcus capitis 29388 0 1052 1 species 29382 Staphylococcus cohnii species 1 1016 0 643214 Staphylococcus stepanovicii 1 species 0 873 1286 Staphylococcus simulans species 1 1211 0 Macrococcus 18 69965 1 0 3568 4 genus 2619255 1 no rank 0 916 0 916 1 species Macrococcus sp. IME1552 1898474 69966 Macrococcus caseolyticus 1 species 0 1711 species 1 923 0 1855823 Macrococcus canis family 9 8495 0 186820 1 37 Listeriaceae 0 7359 6 genus Listeria 80 1 1637 species 1 914 0 1642 Listeria innocua species 1 1654 0 1638 Listeria ivanovii 960 0 species 1 Listeria welshimeri 1643 Listeria seeligeri 1640 0 886 1 species species 1 2865 0 1639 Listeria monocytogenes 0 1099 2 genus Brochothrix 2 2755 1 2756 Brochothrix thermosphacta 1 species 0 1097 539002 8 no rank 0 6418 539742 7 no rank 0 4883 7 genus 0 4883 114 1 33986 Exiguobacterium 921 0 species 1 Exiguobacterium sibiricum 332410 833 0 species 1 Exiguobacterium antarcticum 132920 2644629 3015 0 no rank 4 1224749 Exiguobacterium sp. ZWU0009 species 1 816 0 species 1 732 0 1399115 Exiguobacterium sp. MH3 Exiguobacterium sp. U13-1 1849031 754 0 species 1 713 0 species 1 Exiguobacterium sp. AT1b 360911 no rank 1 1535 0 539738 1378 0 1535 1 genus 2624949 1 no rank 0 1535 species 1 1535 0 1785995 Gemella sp. oral taxon 928 family 121 150028 0 1 186817 468 Bacillaceae Halobacillus 1 45667 2 1925 0 genus 3 1570 Halobacillus halophilus 1 species 0 899 species 1 1024 0 402384 Halobacillus mangrovi 5 1 1906945 Parageobacillus 2 genus 0 1159 1154 0 species 1 Parageobacillus thermoglucosidasius 1426 1 1329200 14 Fictibacillus genus 3 2800 0 species 1 1306 0 255247 Fictibacillus arsenicus 1480 0 species 1 Fictibacillus phosphorivorans 1221500 7 genus 0 6522 42 1 84406 Virgibacillus 2 no rank 0 2110 2620237 1911587 Virgibacillus sp. 6R 1 species 0 1211 403957 Virgibacillus sp. SK37 1 species 0 899 163877 Virgibacillus necropolis species 1 1121 0 1482 Virgibacillus halodenitrificans 1 species 0 1092 Virgibacillus pantothenticus 1473 0 1043 1 species Virgibacillus phasianinus 2017483 0 1114 1 species genus 58 92734 0 1 1386 4709 Bacillus species 1 1216 0 412384 Bacillus aryabhattai Bacillus coagulans 1398 2971 0 species 1 632773 Bacillus beveridgei 1 species 0 1222 79883 Bacillus horikoshii 1 species 0 1530 Bacillus pumilus 1408 0 3996 1 species 86661 26983 0 species group 10 1392 Bacillus anthracis species 1 938 0 species 1 8580 0 1396 Bacillus cereus Bacillus mycoides 1405 3462 0 species 1 1201 0 species 1 Bacillus cytotoxicus 580165 2750818 3 no rank 0 3056 1892404 Bacillus sp. ABP14 1 species 0 692 species 1 1271 0 1839798 Bacillus sp. FDAARGOS_235 Bacillus sp. HBCD-sjtu 2053832 1093 0 species 1 1 species 0 8164 1428 Bacillus thuringiensis 901 0 species 1 Bacillus toyonensis 155322 0 681 1 species Bacillus bombysepticus 658666 1404 Bacillus megaterium species 1 3079 0 0 2105 1 species Bacillus infantis 324767 79881 Bacillus gibsonii 1 species 0 315 1059 0 species 1 Bacillus flexus 86664 1178537 Bacillus xiamenensis 1 species 0 865 Bacillus safensis 561879 2084 0 species 1 Bacillus glycinifermentans 1664069 1849 0 species 1 9 species group 0 17350 653685 3 species subgroup 0 5626 1938374 species 1 863 0 659243 Bacillus siamensis 1390 Bacillus amyloliquefaciens species 1 2664 0 Bacillus velezensis 492670 2099 0 species 1 species 1 275 0 72361 Bacillus vallismortis Bacillus atrophaeus 1452 1184 0 species 1 species 1 1479 0 1648923 Bacillus paralicheniformis 1 species 0 1354 119858 Bacillus sonorensis 0 6083 1 species Bacillus subtilis 1423 0 1349 1 species Bacillus licheniformis 1402 Bacillus methanolicus 1471 974 0 species 1 1792192 species group 1 935 0 0 935 1 species Bacillus altitudinis 293387 Bacillus smithii 1479 912 0 species 1 Bacillus cohnii 33932 0 1394 1 species 1413 Bacillus cellulosilyticus 1 species 0 1041 species 1 1294 0 1547283 Bacillus weihaiensis 0 1471 1 species Bacillus endophyticus 135735 185979 no rank 19 13380 0 0 707 1 species Bacillus sp. SJ-10 563169 227 0 species 1 Bacillus sp. YP1 1574141 2026248 Bacillus sp. 1s-1 species 1 987 0 Bacillus sp. OxB-1 98228 0 1167 1 species Bacillus sp. 1NLA3E 666686 1244 0 species 1 1 species 0 807 1837130 Bacillus sp. FJAT-14266 756828 Bacillus sp. WP8 1 species 0 980 1224 0 species 1 Bacillus sp. X1(2014) 1565991 1 species 0 524 1127744 Bacillus sp. JS species 1 269 0 1409 Bacillus sp. (in: Bacteria) 1856406 Bacillus sp. H15-1 1 species 0 987 1628753 Bacillus sp. LM 4-2 1 species 0 223 1446792 Bacillus sp. Pc3 1 species 0 549 1162 0 species 1 Bacillus sp. IHB B 7164 1827146 0 192 1 species Bacillus sp. Lzh-5 2049935 1941347 Bacillus sp. 275 species 1 496 0 Bacillus sp. BH072 1570330 0 192 1 species species 1 870 0 1774743 Bacillus sp. SDLI1 Bacillus sp. MD-5 2009331 573 0 species 1 genus 2 1294 0 459532 1 2 Terribacillus 1292 0 species 1 Terribacillus aidingensis 586416 genus 2 1117 0 1 1055323 3 Aeribacillus 1 species 0 1114 33936 Aeribacillus pallidus genus 2 1159 0 1 175304 1 Lentibacillus 0 1158 1 species Lentibacillus amyloliquefaciens 1472767 12124 0 genus 15 Geobacillus 1 129337 744 1 species 0 1011 33940 Geobacillus thermodenitrificans Geobacillus stearothermophilus 1422 1319 0 species 1 0 779 1 species Geobacillus genomosp. 3 1921421 1505648 0 3729 4 species group 1462 Geobacillus kaustophilus species 1 446 0 33941 Geobacillus thermoleovorans 1 species 0 1604 1 species 0 943 169283 Geobacillus lituanicus Geobacillus thermocatenulatus 33938 0 736 1 species 2642459 no rank 6 3604 0 1233873 Geobacillus sp. GHH01 species 1 412 0 1 species 0 636 691437 Geobacillus sp. C56-T3 0 690 1 species Geobacillus sp. WCH70 471223 Geobacillus sp. Y412MC61 544556 0 440 1 species 1016 0 species 1 Geobacillus sp. Y4.1MC1 581103 550542 Geobacillus sp. Y412MC52 1 species 0 410 938 0 species 1 Geobacillus subterraneus 129338 2381 0 genus 2 Oceanobacillus 1 182709 6 Oceanobacillus iheyensis 182710 0 2375 1 species 2 29331 1 Amphibacillus 2 genus 0 1123 1 species 0 1121 1449 Amphibacillus xylanus 2675229 0 3265 2 genus 1478 Bacillus simplex species 1 2046 0 1 species 0 1219 264697 Bacillus muralis Lysinibacillus 1 400634 111 7055 0 genus 5 1 no rank 0 1206 2636778 1206 0 species 1 Lysinibacillus sp. YS11 2072025 Lysinibacillus sphaericus 1421 0 3253 1 species 1145276 Lysinibacillus varians 1 species 0 1289 1196 0 species 1 Lysinibacillus fusiformis 28031 Salimicrobium 1 351195 1 1156 0 genus 2 1230341 Salimicrobium jeotgali 1 species 0 1155 150247 1 12 Anoxybacillus genus 6 5136 0 33934 Anoxybacillus flavithermus species 1 1414 0 2639704 no rank 2 1839 0 967 0 species 1 Anoxybacillus sp. B2M1 1490052 0 872 1 species Anoxybacillus sp. B7M1 1490057 Anoxybacillus gonensis 198467 1004 0 species 1 0 867 1 species Anoxybacillus amylolyticus 294699 2675234 0 5783 5 genus 0 979 1 species Bacillus pseudofirmus 79885 79880 Bacillus clausii species 1 1607 0 0 1277 1 species Bacillus lehensis 300825 species 1 769 0 86665 Bacillus halodurans 199441 Bacillus krulwichiae 1 species 0 1151 2827 0 genus 2 2675230 Bacillus oceanisediminis 665099 0 1575 1 species 0 1252 1 species Bacillus kochii 859143 4 family 0 1590 14 1 186824 Thermoactinomycetaceae 51 1677050 1 Novibacillus 2 genus 0 1504 0 1453 1 species Novibacillus thermophilus 1471761 1 genus 0 72 292635 Laceyella 23458 0 family 27 Planococcaceae 1 186818 72 Kurthia 3 1649 1 0 971 2 genus 2644826 0 968 1 no rank 1750719 Kurthia sp. 11kri321 species 1 968 0 1026 0 genus 2 Rummeliibacillus 1 648802 1 Rummeliibacillus stabekisii 241244 1025 0 species 1 10529 0 genus 12 Planococcus 1372 1 177 2662419 1595 0 no rank 2 Planococcus sp. PAMC 21323 1526927 641 0 species 1 2058136 Planococcus sp. MB-3u-03 1 species 0 954 1598147 Planococcus faecalis species 1 698 0 161360 Planococcus antarcticus 1 species 0 755 1 species 0 764 1302659 Planococcus sp. L10.15 species 1 2473 0 192421 Planococcus maritimus species 1 736 0 1374 Planococcus kocurii Planococcus plakortidis 1038856 0 1107 1 species 200991 Planococcus rifietoensis species 1 882 0 Planococcus halocryophilus 1215089 652 0 species 1 1 species 0 690 414778 Planococcus donghaensis Jeotgalibacillus 5 157226 1 0 1755 2 genus 1 species 0 1750 1508404 Jeotgalibacillus malaysiensis 5 genus 0 6166 45 1569 1 Sporosarcina 2 no rank 0 2339 2647733 1930764 Sporosarcina sp. P33 1 species 0 1167 1 species 0 1172 1930546 Sporosarcina sp. P37 0 2832 1 species Sporosarcina ureae 1571 950 0 species 1 Sporosarcina psychrophila 1476 0 2939 3 genus Solibacillus 24 1 648800 1232 0 no rank 1 2637870 0 1232 1 species Solibacillus sp. R5-41 2048654 76853 Solibacillus silvestris species 1 1683 0 0 10768 9 family Alicyclobacillaceae 61 186823 1 29330 1 52 Alicyclobacillus genus 2 3139 0 Alicyclobacillus acidocaldarius 405212 3087 0 species 1 Kyrpidia 1129704 1 98 2759 0 genus 3 2055160 Kyrpidia sp. EA-1 species 1 1146 0 33943 Kyrpidia tusciae species 1 1515 0 Tumebacillus 1 432330 36 4809 0 genus 3 Tumebacillus algifaecis 1214604 0 1605 1 species Tumebacillus avium 1903704 3168 0 species 1 class 11 41713 0 1 526524 22 Erysipelotrichia 41691 0 order 10 Erysipelotrichales 526525 1 66 9 family 0 41625 201 1 128827 Erysipelotrichaceae 6897 0 genus 2 Turicibacter 1 191303 71 2638206 no rank 1 6826 0 Turicibacter sp. H121 1712675 6826 0 species 1 544447 1 no rank 0 19063 1834207 Erysipelotrichaceae bacterium I46 species 1 19063 0 Faecalibaculum 35 1 1729679 0 12194 2 genus 12159 0 species 1 Faecalibaculum rodentium 1702221 Erysipelothrix 1 1647 56 3270 0 genus 3 1 species 0 1578 1648 Erysipelothrix rhusiopathiae 0 1636 1 species Erysipelothrix larvae 1514105 22 1676648 1 Limnochordia 5 class 0 2879 1 1676649 59 Limnochordales order 4 2857 0 family 3 2798 0 1676650 1 30 Limnochordaceae Limnochorda 50 1676651 1 0 2768 2 genus 0 2718 1 species Limnochorda pilosa 1555112 30 class 0 90062 124 909932 1 Negativicutes 1359 1843489 1 Veillonellales 11 order 0 28865 family 10 27506 0 1 31977 1200 Veillonellaceae 0 14600 2 genus Megasphaera 777 1 906 1 species 0 13823 907 Megasphaera elsdenii Negativicoccus 1 909928 4 1945 0 genus 2 Negativicoccus massiliensis 1702287 0 1941 1 species Dialister 38 1 39948 0 2998 2 genus Dialister pneumosintes 39950 0 2960 1 species 6763 0 genus 3 Veillonella 1 29465 18 0 4472 1 species Veillonella parvula 29466 Veillonella rodentium 248315 0 2273 1 species 1 1843488 65 Acidaminococcales order 5 26566 0 909930 1 67 Acidaminococcaceae family 4 26501 0 904 1 81 Acidaminococcus genus 3 26434 0 187327 Acidaminococcus intestini species 1 18109 0 Acidaminococcus fermentans 905 0 8244 1 species 34507 0 order 13 Selenomonadales 909929 1 107 Sporomusaceae 1843490 1 11 3552 0 family 4 15 1 365348 Pelosinus 3 genus 0 3541 2629460 0 1709 1 no rank 1 species 0 1709 484770 Pelosinus sp. UFO1 365349 Pelosinus fermentans 1 species 0 1817 0 30848 8 family Selenomonadaceae 257 1 1843491 genus 6 28031 0 1 970 270 Selenomonas 2637378 14287 0 no rank 3 713030 Selenomonas sp. oral taxon 136 species 1 5745 0 1884263 Selenomonas sp. oral taxon 920 1 species 0 3776 Selenomonas sp. oral taxon 478 712538 4766 0 species 1 species 1 6060 0 69823 Selenomonas sputigena 971 Selenomonas ruminantium species 1 7414 0 genus 1 2560 0 158846 158847 Megamonas hypermegale 1 species 0 2560 10644923 0 class 221 Clostridia 186801 1 638 Natranaerobiales 7 1 485256 0 984 4 order Natranaerobiaceae 7 485255 1 0 977 3 family 0 970 2 genus Natranaerobius 43 1 375928 375929 Natranaerobius thermophilus species 1 927 0 2 1 53433 Halanaerobiales 11 order 0 5374 3331 0 family 6 Halanaerobiaceae 1 972 2 Halanaerobium 9 2330 1 0 2456 3 genus 2331 Halanaerobium praevalens species 1 1271 0 656519 Halanaerobium hydrogeniformans species 1 1176 0 2 1 32636 Halothermothrix 2 genus 0 873 31909 Halothermothrix orenii 1 species 0 871 53434 1 10 Halobacteroidaceae family 4 2041 0 28186 0 963 1 genus Acetohalobium arabaticum 28187 0 963 1 species 42417 1 2 Halobacteroides genus 2 1068 0 1 species 0 1066 42422 Halobacteroides halobius 3 order 0 2464 2770089 0 1284 1 family 2770092 1284 0 genus 1 499228 Tepidanaerobacter acetatoxydans 499229 0 1284 1 species 2770093 2 family 0 1180 0 1180 2 genus Thermosediminibacter 9 1 291988 291990 Thermosediminibacter oceani species 1 1171 0 Clostridiales 1 186802 25922 10600628 0 order 164 1 186806 33 Eubacteriaceae family 5 28685 0 Eubacterium 1243 1 1730 0 26480 2 genus 25237 0 species 1 Eubacterium limosum 1736 1 33951 6 Acetobacterium genus 2 2172 0 species 1 2166 0 33952 Acetobacterium woodii 3 family 0 1721 2 68298 1 Syntrophomonadaceae 862 genus 1 768 0 863 Syntrophomonas wolfei 1 species 0 768 0 951 1 genus 129001 0 951 1 species Syntrophothermus lipocalidus 86170 3983728 0 family 27 Lachnospiraceae 186803 1 2460 1 genus 0 182730 2719313 208479 [Clostridium] bolteae species 1 182730 0 0 178086 3 genus Blautia 198 1 572511 2648079 50374 0 no rank 1 1796616 Blautia sp. YL58 species 1 50374 0 1322 Blautia hansenii species 1 127514 0 181024 0 genus 4 Lachnoclostridium 1506553 1 948 Lachnoclostridium phytofermentans 66219 16772 0 species 1 2608895 1 no rank 0 56135 species 1 56135 0 1834196 Lachnoclostridium sp. YL32 0 107169 1 species Lachnoclostridium phocaeense 1871021 48 1 841 Roseburia 2 genus 0 700346 species 1 700298 0 301301 Roseburia hominis Anaerotignum 2039240 1 24 6533 0 genus 2 6509 0 species 1 Anaerotignum propionicum 28446 Anaerostipes 163 1 207244 0 661673 2 genus 0 661510 1 species Anaerostipes hadrus 649756 2569097 1 genus 0 195509 1 species 0 195509 39488 [Eubacterium] hallii 28050 171814 0 genus 1 [Eubacterium] eligens 39485 0 171814 1 species 2 genus 0 12652 23 1 1663717 Herbinix 0 12629 1 species Herbinix luporum 1679721 genus 3 52465 0 1 830 93 Butyrivibrio 43305 Butyrivibrio proteoclasticus 1 species 0 24648 species 1 27724 0 185008 Butyrivibrio hungatei 698776 1 5 Cellulosilyticum genus 2 6464 0 species 1 6459 0 29360 Cellulosilyticum lentocellum genus 1 36113 0 2719231 [Clostridium] saccharolyticum 84030 36113 0 species 1 186928 2 no rank 0 1595859 species 1 1555825 0 39491 [Eubacterium] rectale species 1 40034 0 712991 Lachnospiraceae bacterium oral taxon 500 2304686 12 family 0 69191 2304691 1 genus 0 3442 0 3442 1 species [Clostridium] stercorarium 1510 2304692 9761 0 genus 3 Ruminiclostridium thermocellum 1515 0 3504 1 species 0 3922 1 species [Clostridium] clariflavum 288965 Herbivorax saccincola 1677857 0 2335 1 species genus 2 4590 0 1 1637257 9 Mageeibacillus 0 4581 1 species Mageeibacillus indolicus 884684 0 39351 1 no rank 2305130 species 1 39351 0 1834198 Ruminiclostridium sp. KB18 2304693 0 4270 1 genus species 1 4270 0 84032 [Clostridium] thermosuccinogenes 2119 0 genus 2 Fastidiosipila 236752 1 16 species 1 2103 0 236753 Fastidiosipila sanguinis Ruminiclostridium 657 1 1508657 0 5658 2 genus 0 5001 1 species [Clostridium] cellulolyticum 1521 family 12 168216 0 1 186804 704 Peptostreptococcaceae 1897 0 no rank 1 1411023 2081703 Peptostreptococcaceae bacterium oral taxon 929 species 1 1897 0 2 genus 0 3663 1 1 1849828 Paeniclostridium Paeniclostridium sordellii 1505 3662 0 species 1 9 1 1481960 Peptoclostridium 2 genus 0 3747 Peptoclostridium acidaminophilum 1731 0 3738 1 species Clostridioides 1870884 1 345 153303 0 genus 2 Clostridioides difficile 1496 0 152958 1 species 0 2670 2 genus Acetoanaerobium 3 186831 1 species 1 2667 0 1511 Acetoanaerobium sticklandii 2232 0 genus 2 Filifactor 44259 1 19 Filifactor alocis 143361 2213 0 species 1 Clostridiaceae 571 1 31979 0 173760 41 family Geosporobacter 1 390805 15 4716 0 genus 2 species 1 4701 0 1424294 Geosporobacter ferrireducens 1 114627 15 Alkaliphilus genus 3 4151 0 1899 0 species 1 Alkaliphilus oremlandii 461876 1 species 0 2237 208226 Alkaliphilus metalliredigens 287 0 genus 1 Mordavella 1981033 1107 1 1485 Clostridium 30 genus 0 160410 6095 0 species 1 Clostridium pasteurianum 1501 species 1 5352 0 1534 Clostridium kluyveri 2657 0 species 1 Clostridium estertheticum 238834 Clostridium perfringens 1502 6649 0 species 1 1 species 0 3259 394958 Clostridium taeniosporum 1 species 0 4012 217159 Clostridium carboxidivorans 1216932 Clostridium bornimense 1 species 0 3971 4546 0 species 1 Clostridium saccharobutylicum 169679 1561 Clostridium baratii 1 species 0 5852 1997 0 species 1 Clostridium formicaceticum 1497 Clostridium aceticum 84022 2299 0 species 1 1488 Clostridium acetobutylicum 1 species 0 3316 1494 Clostridium cochlearium species 1 2318 0 0 6267 1 species Clostridium beijerinckii 1520 2614128 no rank 2 32170 0 1 species 0 27395 1042156 Clostridium sp. SY8519 4775 0 species 1 Clostridium sp. BNL1100 755731 84023 Clostridium autoethanogenum species 1 3676 0 Clostridium butyricum 1492 0 9737 1 species Clostridium tetani 1513 5558 0 species 1 1 species 0 2601 1509 Clostridium sporogenes 6096 0 species 1 Clostridium saccharoperbutylacetonicum 36745 1 species 0 3554 1493 Clostridium cellulovorans 0 2484 1 species Clostridium tyrobutyricum 1519 1548 Clostridium scatologenes species 1 4249 0 Clostridium chauvoei 46867 3109 0 species 1 1542 Clostridium novyi 1 species 0 2771 Clostridium ljungdahlii 1538 3713 0 species 1 Clostridium botulinum 1491 17589 0 species 1 species 1 3406 0 29341 Clostridium argentinense 4 genus 0 3625 95 1 49082 Candidatus Arthromitus 3 no rank 0 3530 2638829 species 1 1275 0 1041504 Candidatus Arthromitus sp. SFB-rat-Yit 1 species 0 1078 49118 Candidatus Arthromitus sp. SFB-mouse species 1 1177 0 1508644 Candidatus Arthromitus sp. SFB-mouse-NL Ruminococcaceae 541000 1 1164 5672647 0 family 13 0 4900413 2 genus Faecalibacterium 1466 1 216851 Faecalibacterium prausnitzii 853 0 4898947 1 species 2305133 0 11902 1 no rank 1 species 0 11902 1572656 Ruminococcaceae bacterium CPB6 Ruminococcus 244 1 1263 0 531483 3 genus 1264 Ruminococcus albus species 1 15122 0 516117 0 species 1 Ruminococcus bicirculans 1160721 genus 2 203472 0 1 946234 270 Flavonifractor species 1 203202 0 292800 Flavonifractor plautii 0 1 1 genus Herbivorax 1890281 0 18553 2 genus Ethanoligenens 26 253238 1 Ethanoligenens harbinense 253239 18527 0 species 1 552397 no rank 1 5659 0 29343 [Clostridium] cellulosi species 1 5659 0 21 1 216572 Oscillospiraceae 3 family 0 60742 459786 1 174 Oscillibacter genus 2 60721 0 Oscillibacter valericigenes 351091 0 60547 1 species 538999 0 313655 10 no rank 3868 0 family 3 Clostridiales Family XVII. Incertae Sedis 539000 1 73 73918 1 36 Thermaerobacter genus 2 3795 0 73919 Thermaerobacter marianensis species 1 3759 0 4 family 0 9104 39 543314 1 Clostridiales Family XIII. Incertae Sedis 1 86331 16 Mogibacterium genus 2 4132 0 Mogibacterium diversum 114527 4116 0 species 1 143393 [Eubacterium] sulci species 1 4933 0 genus 1 148181 0 2717089 Mordavella sp. Marseille-P3756 2086584 148181 0 species 1 0 152502 2 genus Intestinimonas 638 1392389 1 1 species 0 151864 1297617 Intestinimonas butyriciproducens 1 186807 176 Peptococcaceae family 28 40862 0 2282742 genus 1 1551 0 Desulfotomaculum acetoxidans 58138 1551 0 species 1 5 1 51196 Syntrophobotulus 2 genus 0 2082 Syntrophobotulus glycolicus 51197 2077 0 species 1 2282740 1 genus 0 2312 102134 Desulfotomaculum gibsoniae species 1 2312 0 0 1393 1 genus 278993 1 species 0 1393 863643 Thermincola potens 471826 1 9 Candidatus Desulforudis genus 2 1953 0 species 1 1944 0 471827 Candidatus Desulforudis audaxviator Desulfosporosinus 89 79206 1 0 4794 4 genus 79209 Desulfosporosinus meridiei species 1 1329 0 Desulfosporosinus orientis 1563 0 1661 1 species Desulfosporosinus acidiphilus 885581 1715 0 species 1 3752 0 genus 2 Dehalobacterium 1 51514 1 species 1 3751 0 51515 Dehalobacterium formicoaceticum 74 1 56112 Dehalobacter 4 genus 0 6836 2 no rank 0 4520 2635733 2149 0 species 1 Dehalobacter sp. DCA 1147129 1 species 0 2371 1131462 Dehalobacter sp. CF 0 2242 1 species Dehalobacter restrictus 55583 Desulfitobacterium 1 36853 95 9723 0 genus 5 36854 Desulfitobacterium dehalogenans 1 species 0 1935 species 1 4177 0 49338 Desulfitobacterium hafniense 142877 Desulfitobacterium metallireducens species 1 1571 0 233055 Desulfitobacterium dichloroeliminans species 1 1945 0 103 1 1562 Desulfotomaculum 5 genus 0 6290 984 0 species 1 Desulfotomaculum reducens 59610 1 species 0 2244 1564 Desulfotomaculum ruminis 1565 Desulfotomaculum nigrificans species 1 1477 0 0 1482 1 species Desulfotomaculum ferrireducens 1833852 family 3 50519 0 990719 1 76 Christensenellaceae 0 50443 2 genus Christensenella 397 990721 1 Christensenella massiliensis 1805714 50046 0 species 1 family 3 5140 0 31984 1 29 Heliobacteriaceae 5111 0 genus 2 Heliobacterium 1 2697 86 Heliobacterium modesticaldum 35701 0 5025 1 species 5840 0 family 3 Symbiobacteriaceae 1 543349 33 genus 2 5807 0 1 2733 65 Symbiobacterium 0 5742 1 species Symbiobacterium thermophilum 2734 order 38 34835 0 1 68295 42 Thermoanaerobacterales 0 1622 3 family Thermoanaerobacterales Family IV. Incertae Sedis 5 543372 1 1617 0 genus 2 Mahella 1 252965 9 1 species 0 1608 252966 Mahella australiensis Thermoanaerobacteraceae 31 186814 1 0 16917 19 family 42857 3836 0 no rank 4 Moorella 1 44260 14 2419 0 genus 2 Moorella thermoacetica 1525 2405 0 species 1 9 1 42837 Ammonifex 2 genus 0 1417 0 1408 1 species Ammonifex degensii 42838 426 1 1754 Thermoanaerobacter 9 genus 0 9750 0 1261 1 species Thermoanaerobacter wiegelii 46354 Thermoanaerobacter pseudethanolicus 496866 1280 0 species 1 29323 Thermoanaerobacter brockii 1 species 0 1281 2325 Thermoanaerobacter kivui species 1 1071 0 0 2525 2 no rank 2636821 species 1 1319 0 573062 Thermoanaerobacter sp. X513 1206 0 species 1 Thermoanaerobacter sp. X514 399726 108150 Thermoanaerobacter italicus species 1 1008 0 898 0 species 1 Thermoanaerobacter mathranii 583357 0 1366 2 genus Thermacetogenium 15 1 140458 85874 Thermacetogenium phaeum species 1 1351 0 0 1009 2 genus Caldanaerobacter 7 1 249529 1 species 0 1002 911092 Caldanaerobacter subterraneus 129957 1 genus 0 925 species 1 925 0 129958 Carboxydothermus hydrogenoformans 68 543371 1 Thermoanaerobacterales Family III. Incertae Sedis 13 family 0 15683 0 11083 9 genus Caldicellulosiruptor 279 44000 1 1 species 0 1262 413889 Caldicellulosiruptor kronotskyensis 413888 Caldicellulosiruptor hydrothermalis species 1 1299 0 1602 0 species 1 Caldicellulosiruptor bescii 31899 species 1 1161 0 52766 Caldicellulosiruptor lactoaceticus 1 species 0 1626 717609 Caldicellulosiruptor obsidiansis Caldicellulosiruptor owensensis 55205 0 1277 1 species species 1 1354 0 44001 Caldicellulosiruptor saccharolyticus 1 species 0 1223 52765 Caldicellulosiruptor kristjanssonii 30 1 28895 Thermoanaerobacterium 3 genus 0 4532 1517 Thermoanaerobacterium thermosaccharolyticum 1 species 0 2539 0 1963 1 species Thermoanaerobacterium xylanolyticum 29329 2 family 0 571 2 227387 1 Thermodesulfobiaceae 227388 0 569 1 genus Thermodesulfobium narugense 184064 569 0 species 1 200940 phylum 8 1562 0 3 67799 1 Thermodesulfobacteria 8 class 0 1562 1 188710 3 Thermodesulfobacteriales order 7 1559 0 family 6 1556 0 188711 1 5 Thermodesulfobacteriaceae 0 407 1 genus 241192 species 1 407 0 171695 Thermodesulfatator indicus 0 340 1 genus 444090 1653476 Caldimicrobium thiodismutans 1 species 0 340 1 1740 1 Thermodesulfobacterium genus 3 804 0 Thermodesulfobacterium commune 1741 237 0 species 1 Thermodesulfobacterium geofontis 1295609 566 0 species 1 1783257 clade 96 52206 0 19918 0 phylum 29 Verrucomicrobia 74201 1 15 4 1 1955630 Methylacidiphilae 6 class 0 499 2 717963 1 Methylacidiphilales 5 order 0 495 Methylacidiphilaceae 1 717964 1 493 0 family 4 Methylacidiphilum 1 511745 4 492 0 genus 3 1 species 0 236 511746 Methylacidiphilum infernorum Methylacidiphilum fumariolicum 591154 0 252 1 species 110 1 414999 Opitutae 12 class 0 9351 Puniceicoccales 17 415001 1 0 897 4 order Puniceicoccaceae 2 415002 1 0 880 3 family 442430 1 7 Coraliomargarita genus 2 878 0 0 871 1 species Coraliomargarita akajimensis 395922 0 8344 7 order Opitutales 154 415000 1 1 134623 85 Opitutaceae family 6 8190 0 genus 2 2315 0 178440 1 18 Opitutus species 1 2297 0 107709 Opitutus terrae genus 2 2471 0 1961799 1 54 Lacunisphaera species 1 2417 0 1838286 Lacunisphaera limnophila 278955 1 no rank 0 3319 0 3319 1 species Opitutaceae bacterium TAV5 794903 6 class 0 6727 16 203494 1 Verrucomicrobiae 48461 1 42 Verrucomicrobiales order 5 6711 0 0 6669 4 family Akkermansiaceae 44 1647988 1 Akkermansia 1 239934 26 6625 0 genus 3 239935 Akkermansia muciniphila 1 species 0 4369 2230 0 species 1 Akkermansia glycaniphila 1679444 417295 0 3157 2 no rank 2026799 Verrucomicrobia bacterium 1 species 0 1582 0 1575 1 species Verrucomicrobia bacterium IMCC26134 1637999 134549 0 169 2 class 3 1 134550 Candidatus Xiphinematobacter 2 genus 0 169 1 no rank 0 166 2648876 0 166 1 species Candidatus Xiphinematobacter sp. Idaho Grape 1704307 204428 phylum 23 2861 0 204429 1 6 Chlamydiia class 23 2861 0 1963360 1 4 Parachlamydiales order 8 1452 0 92714 family 2 426 0 426 0 genus 2 Waddlia 71666 1 6 Waddlia chondrophila 71667 0 420 1 species 92713 family 2 806 0 282132 0 355 1 genus 389348 Candidatus Protochlamydia naegleriophila species 1 355 0 genus 1 451 0 83551 83552 Parachlamydia acanthamoebae species 1 451 0 0 216 3 family Simkaniaceae 2 92712 1 0 214 2 genus Simkania 2 1 34093 83561 Simkania negevensis species 1 212 0 Chlamydiales 51291 1 4 1403 0 order 14 2 809 1 Chlamydiaceae 13 family 0 1399 1113537 0 1397 12 no rank 1 810 23 Chlamydia genus 12 1397 0 83554 Chlamydia psittaci species 1 229 0 species 1 72 0 83560 Chlamydia muridarum 0 123 1 species Chlamydia gallinacea 1457153 Chlamydia avium 1457141 0 83 1 species species 1 106 0 83559 Chlamydia suis 1 species 0 60 83557 Chlamydia caviae 169 0 species 1 Chlamydia felis 83556 species 1 134 0 813 Chlamydia trachomatis species 1 121 0 83558 Chlamydia pneumoniae 97 0 species 1 Chlamydia abortus 83555 0 180 1 species Chlamydia pecorum 85991 3 phylum 0 7950 256845 3 class 0 7950 57 1 1313211 Lentisphaeria Victivallales 1313 1 278082 0 7893 2 order 1674876 no rank 1 6580 0 Victivallales bacterium CCUG 44730 2094242 0 6580 1 species 36 phylum 0 19761 24 203682 1 Planctomycetes 3799 0 class 7 Phycisphaerae 1 666505 20 order 4 2297 0 666506 1 54 Phycisphaerales family 3 2243 0 1 666507 23 Phycisphaeraceae 0 2220 2 genus Phycisphaera 10 666508 1 species 1 2210 0 547188 Phycisphaera mikurensis 2483366 2 order 0 1482 2483367 2 family 0 1482 genus 2 1482 0 2483368 species 1 784 0 1940790 Phycisphaerae bacterium L21-RPul-D3 Phycisphaerae bacterium ST-PulAB-D4 1941349 0 698 1 species class 3 617 0 2517206 617 0 order 3 Candidatus Brocadiales 1127829 1 8 1127830 609 0 family 2 3 380738 1 Candidatus Kuenenia 2 genus 0 609 0 606 1 species Candidatus Kuenenia stuttgartiensis 174633 15321 0 class 25 Planctomycetia 203683 1 84 order 5 1567 0 2691354 2691357 3 family 0 1043 0 631 2 genus Pirellula 2 1 123 1 species 0 629 125 Pirellula staleyi 1 genus 0 412 265488 265606 Rhodopirellula baltica 1 species 0 412 2691358 524 0 family 2 0 524 2 genus Thermogutta 1 1 1676125 species 1 523 0 1331910 Thermogutta terrifontis 2691356 4842 0 order 6 family 6 4842 0 1763524 1 48 Isosphaeraceae Isosphaera 13 1 127 0 900 2 genus species 1 887 0 128 Isosphaera pallida Paludisphaera 1 1763521 12 2369 0 genus 2 0 2357 1 species Paludisphaera borealis 1387353 0 1525 1 genus 466152 0 1525 1 species Singulisphaera acidiphila 466153 0 1350 2 order 2691355 1914233 2 family 0 1350 0 1350 2 genus Gemmata 8 1 113 2622970 1342 0 no rank 1 1342 0 species 1 Gemmata sp. SH-PL17 1630693 0 7478 11 order Planctomycetales 222 1 112 Planctomycetaceae 126 1 32 7256 0 family 10 2 genus 0 756 2 1 1649490 Rubinisphaera 754 0 species 1 Rubinisphaera brasiliensis 119 Fuerstia 1936111 1 10 908 0 genus 2 898 0 species 1 Fuerstia marisgermanicae 1891926 Planctopirus 1649480 1 4 852 0 genus 2 120 Planctopirus limnophila species 1 848 0 36 1 118 Planctomyces 3 genus 0 4708 2648843 no rank 2 4672 0 1 species 0 1902 1632864 Planctomyces sp. SH-PL14 1636152 Planctomyces sp. SH-PL62 1 species 0 2770 134625 phylum 5 1716 0 5 class 0 1716 9 1921781 1 Kiritimatiellae 1 1921782 8 Kiritimatiellales order 4 1707 0 Kiritimatiellaceae 2 1921783 1 0 1699 3 family 46 1921784 1 Kiritimatiella 2 genus 0 1697 1307763 Kiritimatiella glycovorans species 1 1651 0 2323 0 844 3 no rank 0 844 3 clade 1783234 1 phylum 0 254 95818 1895827 no rank 1 254 0 1 species 0 254 2056494 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 95901 590 0 clade 2 590 0 class 2 2497643 2497644 2 order 0 590 0 590 2 family 2497645 genus 2 590 0 1551504 1 125 Candidatus Babela 1 species 0 465 673862 Candidatus Babela massiliensis 2138240 0 290 2 phylum 1 2138243 1 Coprothermobacteria 2 class 0 290 order 1 289 0 2138246 2138247 289 0 family 1 289 0 genus 1 68335 Coprothermobacter proteolyticus 35786 0 289 1 species 200918 14086 0 phylum 43 Thermotogae 188708 1 12 14086 0 class 43 Thermotogales 6 2419 1 0 9878 27 order 17 family 0 5577 13 188709 1 Thermotogaceae Thermotoga 117 1 2335 0 3864 11 genus 1508419 Thermotoga caldifontis 1 species 0 361 Thermotoga profunda 1508420 0 446 1 species 0 357 1 species Thermotoga naphthophila 93930 1474 0 no rank 4 2631113 species 1 351 0 126740 Thermotoga sp. RQ2 Thermotoga sp. RQ7 126738 469 0 species 1 1157947 Thermotoga sp. Cell2 species 1 419 0 1 species 0 235 1157948 Thermotoga sp. 2812B species 1 272 0 2336 Thermotoga maritima 2337 Thermotoga neapolitana species 1 477 0 1 species 0 360 93929 Thermotoga petrophila Pseudothermotoga 60 1643951 1 0 1700 5 genus Pseudothermotoga lettingae 177758 0 425 1 species 408 0 species 1 Pseudothermotoga elfii 38322 423 0 species 1 Pseudothermotoga thermarum 119394 384 0 species 1 Pseudothermotoga hypogea 57487 9 family 0 4295 7 1 1643950 Fervidobacteriaceae Thermosipho 6 2420 1 0 2693 5 genus 46541 Thermosipho melanesiensis species 1 618 0 2676525 no rank 2 1259 0 1437364 Thermosipho sp. 1070 species 1 633 0 1462747 Thermosipho sp. 1063 1 species 0 626 2421 Thermosipho africanus species 1 810 0 2422 genus 3 1595 0 Fervidobacterium islandicum 2423 0 484 1 species 2424 Fervidobacterium nodosum species 1 427 0 Fervidobacterium pennivorans 93466 0 684 1 species 1643947 1 3 Petrotogales order 8 2908 0 1643949 0 2905 7 family 1 160798 9 Marinitoga genus 3 1871 0 no rank 1 951 0 2640159 1 species 0 951 1545835 Marinitoga sp. 1137 149715 Marinitoga piezophila 1 species 0 911 1 28236 8 Petrotoga genus 2 527 0 0 519 1 species Petrotoga mobilis 69499 507 0 genus 2 Defluviitoga 1511648 1 2 0 505 1 species Defluviitoga tunisiensis 1006576 order 7 1288 0 1 1643946 1 Kosmotogales Kosmotogaceae 4 1643948 1 0 1287 6 family Mesotoga 4 1184396 1 0 388 2 genus species 1 384 0 1184387 Mesotoga prima 1 651456 2 Kosmotoga genus 3 895 0 Kosmotoga olearia 651457 0 428 1 species 1330330 Kosmotoga pacifica 1 species 0 465 1 0 name 0 281 superkingdom 0 68810 2157 Euryarchaeota 8 28890 1 0 62942 229 phylum 0 39743 116 clade 2290931 Methanomicrobia 28 224756 1 0 17164 49 class Methanocellales 570264 1 21 1106 0 order 5 family 4 1085 0 570265 1 1 Methanocellaceae genus 3 1084 0 570266 1 4 Methanocella 1 species 0 271 1175444 Methanocella conradii Methanocella arvoryzae 1175445 809 0 species 1 21 1 94695 Methanosarcinales 27 order 0 10818 family 22 9580 0 2206 1 3 Methanosarcinaceae 455 0 genus 1 2220 Methanolobus psychrophilus 420950 455 0 species 1 2321 385 0 genus 1 1 species 0 385 2322 Methanohalobium evestigatum 23 2207 1 Methanosarcina 13 genus 0 6668 458 0 species 1 Methanosarcina acetivorans 2214 species 1 709 0 38027 Methanosarcina siciliae 0 701 1 species Methanosarcina mazei 2209 1702 0 no rank 4 2644672 1434100 Methanosarcina sp. MTP4 1 species 0 334 Methanosarcina sp. WWM596 1434103 0 414 1 species 1 species 0 545 1434099 Methanosarcina sp. Kolksee Methanosarcina sp. WH1 1434102 0 409 1 species 2208 Methanosarcina barkeri species 1 1408 0 Methanosarcina vacuolata 2215 0 457 1 species 1 species 0 574 418008 Methanosarcina horonobensis 170861 Methanosarcina lacustris species 1 266 0 Methanosarcina thermophila 2210 370 0 species 1 2 genus 0 675 2175 1 species 0 358 2176 Methanohalophilus mahii 1 species 0 317 2177 Methanohalophilus halophilus 101191 0 445 1 genus species 1 445 0 101192 Methanomethylovorans hollandica 2225 genus 2 497 0 Methanococcoides methylutens 2226 0 220 1 species species 1 277 0 29291 Methanococcoides burtonii 1 genus 0 452 196136 452 0 species 1 Methanosalsum zhilinae 39669 0 1217 4 family Methanosaetaceae 8 143067 1 Methanothrix 4 1 2222 0 1209 3 genus 2223 Methanothrix soehngenii species 1 531 0 0 674 1 species Methanosaeta harundinacea 301375 2191 1 21 Methanomicrobiales order 16 5212 0 1198451 family 5 1416 0 2 genus 0 453 1 1 475087 Methanosphaerula species 1 452 0 475088 Methanosphaerula palustris 9 1 395331 Methanoregula 3 genus 0 963 358766 Methanoregula boonei species 1 392 0 species 1 562 0 882104 Methanoregula formicica 2 family 0 647 2 1 88404 Methanocorpusculaceae 1 genus 0 645 2192 1 species 0 645 83984 Methanocorpusculum labreanum 6 1 2194 Methanomicrobiaceae 7 family 0 2863 Methanoculleus 45989 1 36 2437 0 genus 4 83986 Methanoculleus bourgensis species 1 933 0 2198 Methanoculleus marisnigri 1 species 0 778 no rank 1 690 0 2619537 1 species 0 690 86622 Methanoculleus sp. MAB1 230355 1 1 Methanolacinia genus 2 420 0 54120 Methanolacinia petrolearia species 1 419 0 196137 1 family 0 265 1 genus 0 265 2202 265 0 species 1 Methanospirillum hungatei 2203 Halobacteria 171 183963 1 0 22579 67 class 8872 0 order 28 Halobacteriales 1 2235 207 3053 0 family 11 Halobacteriaceae 2236 1 18 1 1980514 2 Halodesulfurarchaeum genus 2 318 0 316 0 species 1 Halodesulfurarchaeum formicicum 1873524 Halobacterium 20 1 2239 0 1859 4 genus no rank 1 627 0 2668073 751944 Halobacterium sp. DL1 1 species 0 627 1 species 0 496 2242 Halobacterium salinarum 1407499 Halobacterium hubeiense 1 species 0 716 Halalkalicoccus 1 332246 17 621 0 genus 2 Halalkalicoccus jeotgali 413810 0 604 1 species Halanaeroarchaeum 1 1656823 2 237 0 genus 2 species 1 235 0 1604004 Halanaeroarchaeum sulfurireducens 5612 0 family 16 Haloarculaceae 1963268 1 85 0 637 2 genus Halorientalis 20 1 1073987 2648975 0 617 1 no rank 1932360 Halorientalis sp. IM1011 species 1 617 0 Natronomonas 63743 1 5 924 0 genus 3 1 species 0 479 2257 Natronomonas pharaonis 440 0 species 1 Natronomonas moolapensis 416273 1160 0 genus 3 Halorhabdus 146825 1 35 146826 Halorhabdus utahensis species 1 666 0 Halorhabdus tiamatea 430914 459 0 species 1 1 1 203135 Halomicrobium 2 genus 0 694 1 species 0 693 57705 Halomicrobium mukohataei 5 genus 0 2112 39 1 2237 Haloarcula species 1 551 0 2238 Haloarcula marismortui 562 0 species 1 Haloarcula hispanica 51589 no rank 1 528 0 2624677 1 species 0 528 1592728 Haloarcula sp. CBA1115 1932004 Haloarcula taiwanensis 1 species 0 432 order 20 6841 0 1644060 1 91 Natrialbales 1644061 1 107 Natrialbaceae family 19 6750 0 Natronococcus 1 29287 2 680 0 genus 2 1 species 0 678 29288 Natronococcus occultus 0 558 2 genus Natrialba 1 1 63742 13769 Natrialba magadii 1 species 0 557 Halostagnicola 11 353799 1 0 537 2 genus 353800 Halostagnicola larsenii 1 species 0 526 1 1 2256 Natronobacterium 2 genus 0 363 1 species 0 362 44930 Natronobacterium gregoryi genus 3 1119 0 1 121871 2 Haloterrigena 0 401 1 species Haloterrigena daqingensis 588898 species 1 716 0 62320 Haloterrigena turkmenica genus 1 765 0 203193 1 species 0 765 229731 Halobiforma lacisalsi 9 88723 1 Natrinema 3 genus 0 1146 no rank 1 554 0 2622230 406552 Natrinema sp. J7-2 species 1 554 0 583 0 species 1 Natrinema pellirubrum 69525 387342 1 genus 0 920 387343 Halopiger xanaduensis 1 species 0 920 1 1269201 2 Salinarchaeum genus 2 555 0 2621923 0 553 1 no rank 1333523 Salinarchaeum sp. Harcht-Bsk1 1 species 0 553 Haloferacales 1644055 1 99 6695 0 order 18 Halorubraceae 1 1963271 24 2683 0 family 8 975 0 genus 2 Salinigranum 1 1644057 5 Salinigranum rubrum 755307 0 970 1 species Halorubrum 29 56688 1 0 1222 3 genus 650 0 species 1 Halorubrum trapanicum 29284 2247 Halorubrum lacusprofundi 1 species 0 543 Halopenitus 1209988 1 8 462 0 genus 2 1048396 Halopenitus persicus species 1 454 0 family 8 3264 0 1 1644056 4 Haloferacaceae genus 2 432 0 1 60846 3 Halogeometricum Halogeometricum borinquense 60847 429 0 species 1 0 279 1 genus 293431 293091 Haloquadratum walsbyi species 1 279 0 1 2251 37 Haloferax genus 4 2549 0 Haloferax mediterranei 2252 0 607 1 species 1 species 0 848 2246 Haloferax volcanii 1 species 0 1057 35746 Haloferax gibbonsii 2678336 no rank 1 649 0 756883 halophilic archaeon DL31 1 species 0 649 0 9777 40 clade 2283794 24 class 0 5968 8 1 183925 Methanobacteria Methanobacteriales 1 1 2158 0 5960 23 order 21 family 0 5820 6 1 2159 Methanobacteriaceae genus 7 3017 0 2172 1 4 Methanobrevibacter Methanobrevibacter millerae 230361 632 0 species 1 Methanobrevibacter olleyae 294671 0 494 1 species 2638681 2 no rank 0 743 0 420 1 species Methanobrevibacter sp. YE315 1609968 Methanobrevibacter sp. AbM4 224719 323 0 species 1 0 519 1 species Methanobrevibacter smithii 2173 Methanobrevibacter ruminantium 83816 625 0 species 1 7 genus 0 1800 2160 0 248 1 species Methanobacterium formicicum 2162 262 0 species 1 Methanobacterium congolense 118062 877455 Methanobacterium lacus 1 species 0 346 2627676 405 0 no rank 2 164 0 species 1 Methanobacterium sp. MB1 1379702 Methanobacterium sp. MZ-A1 1911685 241 0 species 1 868131 Methanobacterium paludis species 1 322 0 59277 Methanobacterium subterraneum species 1 217 0 2316 0 439 1 genus Methanosphaera stadtmanae 2317 439 0 species 1 558 0 genus 5 Methanothermobacter 1 145260 3 187 0 no rank 1 2631116 0 187 1 species Methanothermobacter sp. CaT2 866790 145262 Methanothermobacter thermautotrophicus species 1 174 0 145263 Methanothermobacter marburgensis 1 species 0 129 145261 Methanothermobacter wolfeii 1 species 0 65 2178 0 139 1 family 2179 0 139 1 genus 2180 Methanothermus fervidus 1 species 0 139 16 class 0 3809 29 1 183939 Methanococci 2182 3780 0 order 15 196117 8 family 0 1594 0 267 2 genus Methanotorris 5 196119 1 Methanotorris igneus 2189 262 0 species 1 196118 0 1327 6 genus Methanocaldococcus vulcanius 73913 246 0 species 1 species 1 201 0 2190 Methanocaldococcus jannaschii 2641196 no rank 1 230 0 Methanocaldococcus sp. FS406-22 644281 230 0 species 1 Methanocaldococcus infernus 67760 0 176 1 species 1301915 Methanocaldococcus bathoardescens 1 species 0 288 Methanocaldococcus fervens 83171 186 0 species 1 Methanococcaceae 1 1 2183 0 2186 7 family 1937 0 genus 5 Methanococcus 1 2184 1 1 species 0 241 42879 Methanococcus aeolicus 0 234 1 species Methanococcus vannielii 2187 2188 Methanococcus voltae species 1 241 0 1 species 0 1220 39152 Methanococcus maripaludis 155862 genus 1 248 0 species 1 248 0 155863 Methanothermococcus okinawensis 0 1760 12 class Archaeoglobi 3 183980 1 1757 0 order 11 Archaeoglobales 1 2231 1 Archaeoglobaceae 2232 1 1 1756 0 family 10 Geoglobus 5 1 190818 0 659 3 genus 447 0 species 1 Geoglobus acetivorans 565033 113653 Geoglobus ahangari species 1 207 0 0 175 1 genus 54260 species 1 175 0 54261 Ferroglobus placidus genus 5 921 0 1 2233 1 Archaeoglobus 0 84 1 species Archaeoglobus profundus 84156 species 1 301 0 2234 Archaeoglobus fulgidus species 1 155 0 58290 Archaeoglobus veneficus Archaeoglobus sulfaticallidus 1316941 0 380 1 species 2283796 0 4592 20 clade Thermoplasmata 1 183967 21 4283 0 class 18 order 6 1277 0 1 1235850 4 Methanomassiliicoccales Methanomassiliicoccaceae 5 1 1577788 0 596 3 family genus 1 225 0 1607807 1577791 Candidatus Methanoplasma termitum 1 species 0 225 1 genus 0 366 1080709 species 1 366 0 1406512 Candidatus Methanomassiliicoccus intestinalis 2 family 0 677 2517203 677 0 genus 2 Candidatus Methanomethylophilus 1 1291539 13 1 species 0 664 1291540 Candidatus Methanomethylophilus alvus Thermoplasmatales 8 1 2301 0 2170 10 order 3 family 0 213 1 1747776 1 Cuniculiplasmataceae 212 0 genus 2 Cuniculiplasma 1 1747777 8 species 1 204 0 1673428 Cuniculiplasma divulgatum 1 no rank 0 1009 1919231 Thermoplasmatales archaeon BRNA1 1054217 0 1009 1 species 0 423 2 family 90142 74968 0 423 2 genus Ferroplasma acidarmanus 97393 216 0 species 1 Ferroplasma acidiphilum 74969 207 0 species 1 0 231 2 family 46659 0 231 2 genus 2302 species 1 147 0 50339 Thermoplasma volcanium Thermoplasma acidophilum 2303 0 84 1 species 46630 0 286 1 family 46631 0 286 1 genus species 1 286 0 82076 Picrophilus torridus 1234666 no rank 1 815 0 species 1 815 0 1495144 methanogenic archaeon ISO4-H5 1803510 2 clade 0 309 379546 2 genus 0 309 161 0 no rank 1 2633939 0 161 1 species Aciduliprofundum sp. MAR08-339 673860 379547 Aciduliprofundum boonei species 1 148 0 1 183968 2 Thermococci class 40 7062 0 Thermococcales 13 1 2258 0 7060 39 order family 38 7047 0 1 2259 28 Thermococcaceae 2260 0 1081 7 genus 130 0 species 1 Pyrococcus kukulkanii 1609559 53953 Pyrococcus horikoshii species 1 153 0 211 0 species 1 Pyrococcus abyssi 29292 2629106 0 220 2 no rank species 1 83 0 342949 Pyrococcus sp. NA2 Pyrococcus sp. ST04 1183377 0 137 1 species 2261 Pyrococcus furiosus 1 species 0 261 0 106 1 species Pyrococcus yayanosii 1008460 83867 0 61 1 genus species 1 61 0 971279 Palaeococcus pacificus Thermococcus 54 1 2263 0 5877 29 genus 1 species 0 139 1712654 Thermococcus piezophilus 0 135 1 species Thermococcus onnurineus 342948 0 210 1 species Thermococcus pacificus 71998 Thermococcus celer 2264 186 0 species 1 1505907 Thermococcus eurythermalis 1 species 0 162 1 species 0 216 187880 Thermococcus radiotolerans Thermococcus profundus 49899 0 251 1 species Thermococcus litoralis 2265 180 0 species 1 72803 Thermococcus siculi 1 species 0 206 0 1508 6 no rank 2627626 1 species 0 285 1042877 Thermococcus sp. 4557 135 0 species 1 Thermococcus sp. 2319x1 1674923 2016361 Thermococcus sp. EXT12c species 1 260 0 0 267 1 species Thermococcus sp. 5-4 2008440 246969 Thermococcus sp. AM4 species 1 460 0 122420 Thermococcus sp. P6 1 species 0 101 0 214 1 species Thermococcus barossii 54077 55802 Thermococcus barophilus 1 species 0 218 187878 Thermococcus gammatolerans 1 species 0 168 0 190 1 species Thermococcus nautili 195522 0 262 1 species Thermococcus sibiricus 172049 0 201 1 species Thermococcus cleftensis 163003 Thermococcus gorgonarius 71997 0 149 1 species Thermococcus kodakarensis 311400 0 217 1 species 54262 Thermococcus chitonophagus species 1 152 0 Thermococcus peptonophilus 53952 0 168 1 species 110164 Thermococcus guaymasensis 1 species 0 255 277988 Thermococcus thioreducens 1 species 0 277 species 1 159 0 582419 Thermococcus paralvinellae 5801 0 clade 51 1783275 phylum 38 4237 0 28889 0 4237 38 class Thermoprotei 3 183924 1 0 1061 14 order Desulfurococcales 3 1 114380 family 10 694 0 1 2272 1 Desulfurococcaceae genus 2 205 0 54258 0 193 1 species Ignicoccus hospitalis 160233 Ignicoccus islandicus 54259 12 0 species 1 54253 0 28 1 genus 54254 Thermosphaera aggregans 1 species 0 28 0 165 3 genus Desulfurococcus 2 1 2273 Desulfurococcus mucosus 2275 103 0 species 1 species 1 60 0 94694 Desulfurococcus amylolyticus 2 genus 0 229 2279 118 0 species 1 Staphylothermus hellenicus 84599 Staphylothermus marinus 2280 111 0 species 1 477695 genus 1 66 0 0 66 1 species Thermogladius calderae 1200300 364 0 family 3 2307 54251 71 0 genus 1 0 71 1 species Pyrolobus fumarii 54252 54247 0 191 1 genus 191 0 species 1 Hyperthermus butylicus 54248 1 genus 0 102 2308 1273541 Pyrodictium delaneyi species 1 102 0 8 order 0 1733 2281 family 8 1733 0 118883 1 genus 0 123 12914 Acidianus hospitalis 563177 0 123 1 species 41980 220 0 genus 2 104 0 species 1 Metallosphaera sedula 43687 116 0 species 1 Metallosphaera cuprina 1006005 2284 genus 3 859 0 2285 Sulfolobus acidocaldarius species 1 233 0 0 478 1 species Sulfolobus islandicus 43080 2641160 0 148 1 no rank 0 148 1 species Sulfolobus sp. A20 1891280 2100760 1 genus 0 208 208 0 species 1 Sulfolobus solfataricus 2287 69655 genus 1 323 0 Sulfolobus tokodaii 111955 323 0 species 1 0 310 2 order 871006 family 1 139 0 871007 1 genus 0 139 105850 species 1 139 0 242703 Acidilobus saccharovorans family 1 171 0 255472 genus 1 171 0 200414 Caldisphaera lagunensis 200415 0 171 1 species 3 1 2266 Thermoproteales 13 order 0 1130 114378 5 family 0 554 1 2268 3 Thermofilum genus 5 554 0 Thermofilum uzonense 1550241 0 92 1 species 0 85 1 species Thermofilum pendens 2269 1483572 Thermofilum carboxyditrophus species 1 184 0 190 0 species 1 Thermofilum adornatus 1365176 7 family 0 573 2 1 2267 Thermoproteaceae 164450 genus 2 209 0 Vulcanisaeta distributa 164451 122 0 species 1 985052 Vulcanisaeta moutnovskia species 1 87 0 2270 genus 2 258 0 2271 Thermoproteus tenax 1 species 0 132 184117 Thermoproteus uzoniensis species 1 126 0 1 genus 0 70 2276 2277 Pyrobaculum islandicum species 1 70 0 0 34 1 genus 76886 34 0 species 1 Caldivirga maquilingensis 76887 phylum 12 1498 0 651137 class 5 371 0 1 1643678 1 Nitrososphaeria 321 0 order 3 Nitrososphaerales 1 1033996 4 1 1 1033997 Nitrososphaeraceae 2 family 0 317 1 genus 0 316 497726 0 316 1 species Nitrososphaera viennensis 1034015 1968909 order 1 49 0 1968910 1 family 0 49 498374 49 0 genus 1 1 species 0 49 2045011 Candidatus Nitrosocaldus islandicus no rank 3 409 0 651142 0 166 1 genus 1593364 1410606 Candidatus Nitrosopelagicus brevis species 1 166 0 1825023 genus 2 243 0 1 species 0 128 1846278 Candidatus Nitrosotenuis sp. AQ6f 1 species 0 115 1603555 Candidatus Nitrosotenuis cloacae Nitrosopumilales 1 31932 2 718 0 order 4 0 716 3 family 338190 245 0 genus 1 1993653 Candidatus Nitrosomarinus catalina 1898749 0 245 1 species 338191 0 471 2 genus 0 208 1 species Candidatus Nitrosopumilus sediminis 1229909 1580092 Candidatus Nitrosopumilus adriaticus species 1 263 0 51967 66 0 phylum 1 66 0 genus 1 498845 0 66 1 species Candidatus Korarchaeum cryptofilum 498846 0 67 1 clade 1783276 67 0 phylum 1 1801631 2490204 0 67 1 genus Candidatus Micrarchaeota archaeon Mia14 1920749 0 67 1 species