members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 29 4940 1757342 4469 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321Klebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4Serratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 name 1 0 0 superkingdom 270 2157 0 24498 0 11 clade 1783276 1 0 11 phylum 1801631 1 2490204 1 genus 11 0 0 Candidatus Micrarchaeota archaeon Mia14 11 species 1920749 1 0 3726 clade 56 1783275 2042 0 651137 15 phylum 1294 0 5 1643678 class 3 1033996 1 order 441 Nitrososphaerales 1 0 1 0 440 Nitrososphaeraceae 1 family 1033997 2 genus 497726 1 0 439 1034015 1 species Nitrososphaera viennensis 439 0 853 0 2 1968909 order 1968910 2 family 1 Candidatus Nitrosocaldaceae 853 1 0 852 0 498374 1 genus 2045011 1 species Candidatus Nitrosocaldus islandicus 852 0 246 0 651142 5 no rank 3 1825023 genus 1 Candidatus Nitrosotenuis 100 1 0 1603555 1 species 54 Candidatus Nitrosotenuis cloacae 0 0 Candidatus Nitrosotenuis sp. AQ6f 45 species 1 1846278 2 1593364 genus 1 Candidatus Nitrosopelagicus 146 0 4 0 Candidatus Nitrosopelagicus brevis 142 species 1 1410606 31932 5 order 502 0 3 0 Nitrosopumilaceae 502 family 1 338190 5 1 genus 338191 3 4 0 297 Nitrosopumilus species 1 1229909 0 151 Candidatus Nitrosopumilus sediminis 0 142 Candidatus Nitrosopumilus adriaticus species 1 1580092 202 0 1993653 1 genus species 1 1898749 0 Candidatus Nitrosomarinus catalina 202 1645 0 40 28889 phylum class 1 183924 40 0 2 Thermoprotei 1645 Acidilobales 174 0 1 4 871006 order 1 871007 1 family 14 0 genus 105850 1 0 14 242703 1 species 14 Acidilobus saccharovorans 0 255472 2 family 159 0 Caldisphaera 159 0 3 2 200414 genus 1 species 200415 1 0 156 Caldisphaera lagunensis 2266 13 order 1 Thermoproteales 303 1 0 6 114378 family 1 Thermofilaceae 147 1 0 2268 5 genus 1 Thermofilum 146 0 1 1 1550241 species 24 Thermofilum uzonense 0 45 Thermofilum carboxyditrophus 0 1 1483572 species Thermofilum adornatus 52 0 1365176 1 species 0 Thermofilum pendens 24 species 1 2269 155 0 6 2267 family 49 0 2270 2 genus Thermoproteus uzoniensis 24 0 184117 1 species 0 25 Thermoproteus tenax species 1 2271 genus 76886 1 0 32 Caldivirga maquilingensis 32 0 76887 1 species 1 2276 genus 20 0 species 2277 1 0 20 Pyrobaculum islandicum genus 2 164450 0 54 Vulcanisaeta moutnovskia 19 0 985052 1 species 35 Vulcanisaeta distributa 0 164451 1 species 0 2 Desulfurococcales 317 order 1 14 114380 0 100 family 4 2307 1 genus 2 2308 3 0 16 Pyrodictium 13 Pyrodictium delaneyi 0 1273541 1 species 1 54247 genus 59 0 1 54248 species Hyperthermus butylicus 59 0 0 25 genus 54251 1 0 Pyrolobus fumarii 25 species 54252 1 215 Desulfurococcaceae 4 0 2272 9 1 family 23 0 1 477695 genus 23 Thermogladius calderae 0 1200300 1 species genus 2 2273 0 46 species 94694 1 0 36 Desulfurococcus amylolyticus species 1 2275 0 10 Desulfurococcus mucosus genus 2279 2 0 108 84599 1 species 45 Staphylothermus hellenicus 0 0 63 Staphylothermus marinus species 1 2280 genus 54258 2 0 21 160233 1 species 14 Ignicoccus hospitalis 0 species 54259 1 0 Ignicoccus islandicus 7 13 0 1 54253 genus Thermosphaera aggregans 13 0 54254 1 species order 8 2281 0 849 118883 8 family 849 0 genus 2284 3 0 406 2285 1 species 75 Sulfolobus acidocaldarius 0 no rank 2641160 1 0 128 Sulfolobus sp. A20 128 0 1 1891280 species Sulfolobus islandicus 203 0 1 43080 species genus 1 2100760 0 112 1 2287 species Sulfolobus solfataricus 112 0 78 0 41980 2 genus 0 18 Metallosphaera sedula species 1 43687 60 Metallosphaera cuprina 0 1006005 1 species 116 0 1 12914 genus 116 Acidianus hospitalis 0 1 563177 species 0 137 genus 1 69655 137 Sulfolobus tokodaii 0 1 111955 species 39 0 51967 1 phylum 1 498845 genus 39 0 1 498846 species 39 Candidatus Korarchaeum cryptofilum 0 213 28890 1 phylum 20761 Euryarchaeota 2 0 class 9 183980 0 260 Archaeoglobales 260 0 1 9 2231 order 1 259 0 8 2232 family genus 2 190818 0 54 Geoglobus ahangari 27 0 1 113653 species species 565033 1 0 Geoglobus acetivorans 27 genus 1 2 54260 1 0 Ferroglobus 42 species 54261 1 0 Ferroglobus placidus 41 genus 2233 4 0 163 1316941 1 species 45 Archaeoglobus sulfaticallidus 0 Archaeoglobus veneficus 42 0 58290 1 species 0 Archaeoglobus profundus 36 species 1 84156 0 40 Archaeoglobus fulgidus species 2234 1 0 12531 clade 103 2290931 Methanomicrobia 4366 0 3 224756 48 class 1 4 570264 1 order 198 Methanocellales 1 0 family 570265 3 0 197 2 0 197 Methanocella 1 genus 3 570266 0 Methanocella conradii 32 species 1175444 1 Methanocella arvoryzae 163 0 1175445 1 species Methanosarcinales 3690 0 7 94695 26 order 1 166 0 2 143067 family genus 2222 2 0 166 0 Methanothrix soehngenii 106 species 1 2223 0 Methanosaeta harundinacea 60 species 1 301375 1 family 23 2206 1 0 3517 Methanosarcinaceae 0 120 genus 2175 2 0 Methanohalophilus mahii 63 species 1 2176 1 2177 species 57 Methanohalophilus halophilus 0 Methanosarcina 2740 0 4 13 2207 genus 1 0 Methanosarcina mazei 316 species 1 2209 Methanosarcina thermophila 105 0 2210 1 species 2208 1 species Methanosarcina barkeri 662 0 156 Methanosarcina vacuolata 0 1 2215 species 170861 1 species Methanosarcina lacustris 207 0 species 1 38027 0 492 Methanosarcina siciliae 2214 1 species Methanosarcina acetivorans 118 0 species 1 418008 0 100 Methanosarcina horonobensis no rank 2644672 4 0 580 species 1 1434099 0 Methanosarcina sp. Kolksee 152 0 103 Methanosarcina sp. WWM596 species 1434103 1 Methanosarcina sp. WH1 85 0 1 1434102 species 240 Methanosarcina sp. MTP4 0 1 1434100 species 1 2220 genus 48 0 0 48 Methanolobus psychrophilus species 420950 1 85 0 196136 1 genus 85 Methanosalsum zhilinae 0 1 39669 species 1 2321 genus 281 0 281 Methanohalobium evestigatum 0 2322 1 species 0 179 genus 2 2225 75 Methanococcoides methylutens 0 2226 1 species 29291 1 species Methanococcoides burtonii 104 0 63 Methanomethylovorans 0 4 101191 2 1 genus 0 59 Methanomethylovorans hollandica species 1 101192 17 2191 order 1 Methanomicrobiales 475 5 0 family 1 1198451 5 0 6 Methanoregulaceae 155 46 0 1 475087 genus Methanosphaerula palustris 46 0 475088 1 species genus 1 3 395331 1 0 Methanoregula 103 1 358766 species Methanoregula boonei 81 0 species 1 882104 0 Methanoregula formicica 21 27 0 88404 2 family 2192 2 genus 1 Methanocorpusculum 27 4 0 83984 1 species Methanocorpusculum labreanum 23 0 2 196137 family 71 0 2202 2 1 genus 71 Methanospirillum 6 0 species 1 2203 0 65 Methanospirillum hungatei family 1 7 2194 0 4 Methanomicrobiaceae 217 2 230355 genus 1 Methanolacinia 36 2 0 species 54120 1 0 34 Methanolacinia petrolearia 2 0 Methanoculleus 177 genus 1 4 45989 49 0 2619537 1 no rank 49 Methanoculleus sp. MAB1 0 86622 1 species species 83986 1 0 69 Methanoculleus bourgensis species 1 2198 0 57 Methanoculleus marisnigri Halobacteria 8165 0 36 55 183963 class 1 1 order 16 1644055 0 39 3427 Haloferacales 1 2678336 no rank 115 0 species 1 756883 0 halophilic archaeon DL31 115 6 1963271 family 574 0 0 1 Halorubrum 232 genus 1 3 56688 species 2247 1 0 Halorubrum lacusprofundi 86 0 145 Halorubrum trapanicum species 1 29284 1 0 Halopenitus 104 genus 1 1209988 2 0 103 Halopenitus persicus species 1048396 1 genus 1 1644057 0 238 238 Salinigranum rubrum 0 755307 1 species family 1 1644056 8 0 5 Haloferacaceae 2699 Haloferax 616 7 0 2251 4 genus 1 species 2246 1 0 Haloferax volcanii 277 0 257 Haloferax gibbonsii species 1 35746 75 Haloferax mediterranei 0 1 2252 species 0 71 genus 1 60846 species 60847 1 0 71 Halogeometricum borinquense 293431 2 genus 1 Haloquadratum 2007 5 0 0 Haloquadratum walsbyi 2002 species 1 293091 35 0 Natrialbales 3589 order 1 16 1644060 15 1644061 1 family 3554 Natrialbaceae 0 11 203193 2 genus 1 Halobiforma 332 0 3 species 229731 1 0 329 Halobiforma lacisalsi 1 353799 genus 52 0 0 52 Halostagnicola larsenii species 1 353800 genus 1 2 63742 0 2 Natrialba 2091 Natrialba magadii 2089 0 1 13769 species 113 Natronococcus 2 0 2 29287 1 genus species 1 29288 0 Natronococcus occultus 111 387342 1 genus 137 0 1 387343 species Halopiger xanaduensis 137 0 0 109 genus 2256 1 Natronobacterium gregoryi 109 0 44930 1 species 0 195 genus 2 88723 no rank 1 2622230 0 81 species 406552 1 0 Natrinema sp. J7-2 81 species 1 69525 0 114 Natrinema pellirubrum 0 98 genus 1 1269201 no rank 2621923 1 0 98 98 Salinarchaeum sp. Harcht-Bsk1 0 1 1333523 species 0 416 genus 2 121871 Haloterrigena turkmenica 147 0 1 62320 species 269 Haloterrigena daqingensis 0 1 588898 species 2235 22 order 1 Halobacteriales 1113 7 0 Haloarculaceae 682 1 0 13 1963268 family 1 0 81 genus 1073987 1 1 2648975 no rank 81 0 Halorientalis sp. IM1011 81 0 1 1932360 species 0 108 genus 146825 2 species 146826 1 0 44 Halorhabdus utahensis 0 64 Halorhabdus tiamatea species 430914 1 0 171 genus 2 63743 Natronomonas pharaonis 84 0 2257 1 species 0 Natronomonas moolapensis 87 species 1 416273 Halomicrobium 75 0 1 203135 2 genus 1 species 57705 1 0 Halomicrobium mukohataei 74 genus 1 2237 5 0 6 Haloarcula 246 1 2238 species Haloarcula marismortui 54 0 species 1 51589 0 Haloarcula hispanica 54 0 56 no rank 1 2624677 1 1592728 species 56 Haloarcula sp. CBA1115 0 species 1932004 1 0 Haloarcula taiwanensis 76 Halobacteriaceae 424 1 0 2236 8 family 1 genus 1 1656823 0 39 species 1604004 1 0 39 Halanaeroarchaeum sulfurireducens genus 1980514 1 0 20 1873524 1 species 20 Halodesulfurarchaeum formicicum 0 genus 1 4 2239 0 4 Halobacterium 304 106 0 2668073 1 no rank 106 Halobacterium sp. DL1 0 1 751944 species 1 2242 species 90 Halobacterium salinarum 0 1407499 1 species Halobacterium hubeiense 104 0 332246 1 genus 60 0 60 Halalkalicoccus jeotgali 0 1 413810 species 2257 Thermococci 0 1 41 183968 1 class order 1 2258 40 0 1 Thermococcales 2256 Thermococcaceae 2255 2 0 39 2259 family 1 1 0 241 Pyrococcus 1 genus 2260 8 species 1 29292 0 35 Pyrococcus abyssi no rank 2 2629106 0 68 species 1183377 1 0 40 Pyrococcus sp. ST04 342949 1 species Pyrococcus sp. NA2 28 0 Pyrococcus furiosus 51 0 1 2261 species 0 23 Pyrococcus yayanosii species 1 1008460 species 1 53953 0 38 Pyrococcus horikoshii 1609559 1 species Pyrococcus kukulkanii 25 0 0 42 genus 83867 1 42 Palaeococcus pacificus 0 971279 1 species 4 0 1970 Thermococcus 1 genus 29 2263 0 26 Thermococcus piezophilus species 1 1712654 species 1 1505907 0 Thermococcus eurythermalis 15 Thermococcus nautili 21 0 1 195522 species Thermococcus siculi 1178 0 72803 1 species species 110164 1 0 Thermococcus guaymasensis 25 53952 1 species 19 Thermococcus peptonophilus 0 17 Thermococcus pacificus 0 1 71998 species species 172049 1 0 62 Thermococcus sibiricus 19 Thermococcus chitonophagus 0 1 54262 species 0 Thermococcus onnurineus 26 species 1 342948 0 Thermococcus litoralis 41 species 2265 1 0 Thermococcus profundus 23 species 49899 1 species 54077 1 0 31 Thermococcus barossii species 1 187878 0 45 Thermococcus gammatolerans 582419 1 species 77 Thermococcus paralvinellae 0 0 62 Thermococcus barophilus species 1 55802 species 163003 1 0 15 Thermococcus cleftensis Thermococcus celer 16 0 1 2264 species 2627626 6 no rank 161 0 28 Thermococcus sp. EXT12c 0 1 2016361 species 122420 1 species 23 Thermococcus sp. P6 0 246969 1 species 31 Thermococcus sp. AM4 0 species 1 2008440 0 21 Thermococcus sp. 5-4 species 1 1674923 0 Thermococcus sp. 2319x1 43 1 1042877 species Thermococcus sp. 4557 15 0 species 277988 1 0 30 Thermococcus thioreducens species 71997 1 0 Thermococcus gorgonarius 15 187880 1 species Thermococcus radiotolerans 17 0 25 Thermococcus kodakarensis 0 311400 1 species 958 0 2283796 16 clade 0 838 class 14 183967 order 3 1235850 0 280 0 49 family 2517203 1 genus 1 1291539 0 49 Candidatus Methanomethylophilus alvus 49 0 1291540 1 species 0 231 family 2 1577788 48 0 1607807 1 genus 0 48 Candidatus Methanoplasma termitum species 1577791 1 1080709 1 genus 183 0 0 183 Candidatus Methanomassiliicoccus intestinalis species 1406512 1 10 2301 order 518 0 1 46630 family 75 0 1 46631 genus 75 0 species 82076 1 0 Picrophilus torridus 75 50 0 1 1919231 no rank species 1 1054217 0 Thermoplasmatales archaeon BRNA1 50 0 82 family 2 46659 82 0 2 2302 genus species 1 50339 0 Thermoplasma volcanium 60 2303 1 species Thermoplasma acidophilum 22 0 0 1 175 Cuniculiplasmataceae 1 family 1747776 3 1747777 2 genus 1 Cuniculiplasma 174 13 0 1 1673428 species 161 Cuniculiplasma divulgatum 0 3 90142 family 136 0 0 2 136 Ferroplasma 1 genus 3 74968 species 1 97393 0 66 Ferroplasma acidarmanus 68 Ferroplasma acidiphilum 0 74969 1 species no rank 1234666 1 0 40 methanogenic archaeon ISO4-H5 40 0 1 1495144 species clade 1803510 2 0 120 genus 379546 2 0 120 species 379547 1 0 Aciduliprofundum boonei 76 no rank 2633939 1 0 44 0 Aciduliprofundum sp. MAR08-339 44 species 1 673860 4753 0 43 2283794 clade class 183925 24 0 2349 2158 24 1 order 2349 Methanobacteriales 5 0 1 2178 family 161 0 1 2179 genus 161 0 species 1 2180 0 Methanothermus fervidus 161 2159 22 1 family 2183 Methanobacteriaceae 0 4 0 202 genus 2316 1 2317 1 species Methanosphaera stadtmanae 202 0 113 Methanothermobacter 0 1 145260 5 1 genus 0 Methanothermobacter thermautotrophicus 24 species 145262 1 21 Methanothermobacter wolfeii 0 145261 1 species 20 0 1 2631116 no rank 0 20 Methanothermobacter sp. CaT2 species 866790 1 1 145263 species 47 Methanothermobacter marburgensis 0 8 2160 genus 1 Methanobacterium 673 0 2 species 2162 1 0 91 Methanobacterium formicicum 1 877455 species 193 Methanobacterium lacus 0 no rank 2627676 2 0 133 species 1911685 1 0 Methanobacterium sp. MZ-A1 73 Methanobacterium sp. MB1 60 0 1 1379702 species 1 118062 species 74 Methanobacterium congolense 0 1 59277 species 86 Methanobacterium subterraneum 0 1 868131 species Methanobacterium paludis 94 0 Methanobrevibacter 1191 0 3 7 2172 genus 1 species 1 2173 0 209 Methanobrevibacter smithii species 1 83816 0 142 Methanobrevibacter ruminantium 283 Methanobrevibacter olleyae 0 294671 1 species 343 0 2 2638681 no rank 1 224719 species Methanobrevibacter sp. AbM4 169 0 1 1609968 species Methanobrevibacter sp. YE315 174 0 species 230361 1 0 Methanobrevibacter millerae 211 183939 19 class 1 Methanococci 2404 1 0 1 order 18 2182 0 5 2403 Methanococcales 0 5 Methanococcaceae 1474 family 1 2183 7 1 155862 genus 108 0 0 Methanothermococcus okinawensis 108 species 1 155863 4 0 1361 Methanococcus 1 genus 2184 5 species 42879 1 0 Methanococcus aeolicus 139 39152 1 species 671 Methanococcus maripaludis 0 2187 1 species Methanococcus vannielii 149 0 398 Methanococcus voltae 0 1 2188 species family 1 10 196117 4 0 Methanocaldococcaceae 924 genus 1 196118 7 0 2 Methanocaldococcus 826 0 Methanocaldococcus fervens 132 species 1 83171 species 1 67760 0 Methanocaldococcus infernus 106 2190 1 species Methanocaldococcus jannaschii 152 0 species 1301915 1 0 Methanocaldococcus bathoardescens 143 Methanocaldococcus vulcanius 161 0 73913 1 species no rank 2641196 1 0 130 130 Methanocaldococcus sp. FS406-22 0 1 644281 species 3 0 Methanotorris 94 genus 1 196119 2 0 Methanotorris igneus 91 species 2189 1 Bacteria 1727904 0 22 4169 2 superkingdom 1 phylum 200783 21 0 2371 2371 Aquificae 0 5 187857 21 1 class 1984 Aquificales 5 0 17 32069 1 order 900 0 10 64898 family 0 23 Hydrogenobaculum 729 genus 1 168657 6 no rank 5 2622382 0 706 species 547144 1 0 135 Hydrogenobaculum sp. HO 166 Hydrogenobaculum sp. Y04AAS1 0 1 380749 species 547146 1 species 135 Hydrogenobaculum sp. SN 0 0 Hydrogenobaculum sp. SHO 135 species 1 547145 0 135 Hydrogenobaculum sp. 3684 species 547143 1 0 30 genus 1 2713 species 63363 1 0 30 Aquifex aeolicus genus 1 939 0 65 940 1 species Hydrogenobacter thermophilus 65 0 2 75905 genus 76 0 38 Thermocrinis ruber 0 75906 1 species 136094 1 species 38 Thermocrinis albus 0 1 family 224027 5 3 0 990 Hydrogenothermaceae genus 1 182899 0 157 0 Persephonella marina 157 species 309805 1 3 212790 genus 1 Sulfurihydrogenibium 830 0 2 506 0 2619248 1 no rank 506 Sulfurihydrogenibium sp. YO3AOP1 0 1 436114 species 309806 1 species 322 Sulfurihydrogenibium azorense 0 89 0 90150 1 no rank 412592 1 genus 89 0 1 412593 species Thermosulfidibacter takaii 89 0 1485951 3 order 382 0 3 558314 1 family 382 Desulfurobacteriaceae 1 0 64159 1 genus 336 0 species 64160 1 0 336 Desulfurobacterium thermolithotrophum 1 171868 genus 45 0 0 45 Thermovibrio ammonificans species 228745 1 clade 1783270 347 0 106986 clade 68336 335 0 105749 309 976 phylum 1 Bacteroidetes 103403 0 16 7 0 Cytophagia 12283 class 1 55 768503 0 35 Cytophagales 12276 order 1 54 768507 1501348 4 family 1 Amoebophilaceae 344 0 5 196 0 1 281119 genus 0 196 Candidatus Amoebophilus asiaticus species 1 281120 1 genus 273135 2 0 4 143 Candidatus Cardinium 0 139 no rank 1 2641185 Cardinium endosymbiont of Encarsia pergandiella 139 0 249402 1 species family 1853234 1 0 464 0 464 genus 59740 1 0 464 no rank 1 2664020 464 Persicobacter sp. JZB09 0 1 1085624 species Flammeovirgaceae 3266 0 5 200667 3 family 1 1 59739 genus 923 0 923 0 2637820 1 no rank 0 Flammeovirga sp. MY04 923 species 1 1191459 2338 0 1 340671 no rank 1257021 1 species 2338 Flammeovirgaceae bacterium 311 0 2182 Hymenobacteraceae 5 0 1853232 16 1 family 3 323449 genus 1 Pontibacter 274 3 0 0 95 Pontibacter akesuensis species 388950 1 species 400092 1 0 Pontibacter korlensis 176 9 0 1242 Hymenobacter 1 genus 89966 8 1 1446467 species 146 Hymenobacter swuensis 0 165 Hymenobacter sedentarius 0 1 1411621 species 0 922 no rank 5 2615202 0 236 Hymenobacter sp. PAMC 26628 species 1484118 1 Hymenobacter sp. APR13 153 0 1356852 1 species 312 Hymenobacter sp. PAMC 26554 0 1484116 1 species 1 1385663 species 97 Hymenobacter sp. DG25A 0 0 Hymenobacter sp. DG25B 124 species 1 1385664 661 Rufibacter 7 0 1379908 4 1 genus Rufibacter tibetensis 266 0 512763 1 species 2639626 2 no rank 388 0 species 1 1379909 0 163 Rufibacter sp. DG15C 0 225 Rufibacter sp. DG31D species 1379910 1 0 3 2616 Cytophagaceae 1 family 89373 15 1 genus 2 978 3 0 368 Cytophaga 365 Cytophaga hutchinsonii 0 985 1 species 127 0 1 861914 genus 2620963 1 no rank 127 0 1834519 1 species Fibrella sp. ES10-3-2-2 127 0 0 1 Dyadobacter 210 genus 1 2 120831 94254 1 species Dyadobacter fermentans 209 0 740 0 105 1 genus 0 740 Runella slithyformis species 1 106 genus 1 107 6 0 7 Spirosoma 947 1178516 1 species Spirosoma montaniterrae 173 0 0 Spirosoma aerolatum 279 species 1 1211326 1379870 1 species Spirosoma radiotolerans 200 0 0 83 Spirosoma rigui species 564064 1 Spirosoma sp. HA7 205 0 2057025 1 species 0 3 Leadbetterella 221 genus 1 319458 2 316068 1 species 218 Leadbetterella byssophila 0 family 1937968 2 0 862 1 genus 2 1937972 4 0 862 Bernardetia Bernardetia litoralis 858 0 999 1 species 0 592 family 2762301 2 0 7 Marivirga 592 genus 1 2 869806 Marivirga tractuosa 585 0 1006 1 species 1915 Cyclobacteriaceae 0 2 10 563798 1 family genus 1 232244 2 12 0 Belliella 507 495 Belliella baltica 0 1 232259 species 1 genus 390846 2 10 0 219 Echinicola species 390884 1 0 Echinicola vietnamensis 209 2 0 Algoriphagus 305 genus 1 2 246875 species 1 1727163 0 Algoriphagus sp. M8-2 303 5 0 882 Cyclobacterium 1 genus 68288 3 species 104 1 0 440 Cyclobacterium marinum 437 Cyclobacterium amurskyense 0 320787 1 species 1 class 144 117743 0 59 74955 Flavobacteriia 1 order 200644 143 77 0 74896 Flavobacteriales 1 family 102 49546 244 0 61887 Flavobacteriaceae 1 0 786 Tamlana 1 genus 393005 2 2069432 1 species Tamlana sp. UJ94 785 0 genus 1 417127 0 932 932 Zunongwangia profunda 0 1 398743 species 252356 5 genus 1 Maribacter 2649 0 9 1178778 1 species Maribacter cobaltidurans 379 0 2261 0 3 2615042 no rank Maribacter sp. HTCC2170 577 0 313603 1 species 0 911 Maribacter sp. 1_2014MBL_MicDiv species 1644130 1 1 1836467 species Maribacter sp. T28 773 0 1 genus 9 237 21 0 7065 Flavobacterium 0 Flavobacterium indicum 937 species 1 312277 species 996 1 0 1393 Flavobacterium columnare species 1 1763534 0 478 Flavobacterium crassostreae 708 Flavobacterium psychrophilum 0 96345 1 species 0 626 Flavobacterium commune species 1 1306519 species 1 55197 0 Flavobacterium branchiophilum 682 Flavobacterium gilvum 673 0 1492737 1 species species 1 986 0 Flavobacterium johnsoniae 1547 0 1071 genus 1 336276 no rank 1 2615019 0 1071 2058135 1 species Olleya sp. Bg11-27 1071 0 0 1129 genus 1 1649495 no rank 1 2622645 0 1129 1 1936081 species Seonamhaeicola sp. S2-3 1129 0 0 10 3205 Cellulophaga 1 genus 4 104264 species 1 979 0 1089 Cellulophaga lytica 0 Cellulophaga algicola 1060 species 59600 1 species 1 76594 0 Cellulophaga baltica 1046 358023 2 1 genus 1310 Lutibacter 0 2 0 1308 Lutibacter profundi species 1 1622118 Croceibacter 903 2 0 216431 2 genus 1 species 313588 1 0 901 Croceibacter atlanticus Gramella 1820 15 0 292691 5 genus 1 329 Gramella flava 0 1486245 1 species species 2126553 1 0 440 Gramella sp. SH35 species 411153 1 0 568 Gramella forsetii 0 468 Gramella sp. LPB0144 species 1913577 1 1 153265 genus 590 0 101385 1 species 590 Aequorivita sublithincola 0 0 1018 genus 1 1204360 1 762954 species 1018 Siansivirga zeaxanthinifaciens 0 0 618 genus 1 143222 0 618 no rank 1 2633436 Salegentibacter sp. T436 618 0 1729720 1 species 0 1043 genus 1518147 1 1790137 1 species 1043 Wenyingzhuangia fucanilytica 0 5 104267 1 genus 4793 Tenacibaculum 0 7 1 107401 species 1038 Tenacibaculum maritimum 0 0 Tenacibaculum jejuense 1444 species 584609 1 Tenacibaculum todarodis 1322 0 1850252 1 species 0 982 Tenacibaculum dicentrarchi species 669041 1 1782 Myroides 35 0 76831 5 1 genus 434 Myroides odoratimimus 0 76832 1 species 2642485 2 no rank 832 0 0 Myroides sp. A21 418 species 1 1583100 1 1458492 species 414 Myroides sp. ZB35 0 1 480520 species Myroides profundi 481 0 1 genus 83612 2 0 2 803 Psychroflexus species 1 57029 0 801 Psychroflexus torquis 17 0 Dokdonia 1730 genus 1 326319 4 species 326320 1 0 Dokdonia donghaensis 610 2 2615033 no rank 1103 0 504 Dokdonia sp. MED134 0 313590 1 species 0 599 Dokdonia sp. 4H-3-7-5 species 983548 1 1 252306 genus 120 0 Robiginitalea biformata 120 0 252307 1 species 178469 1 genus 530 0 616991 1 species 530 Arenibacter algicola 0 genus 1176327 1 0 302 302 0 2636237 1 no rank 0 Aureitalea sp. RR4-38 302 species 2094025 1 genus 1 286104 3 0 9 Winogradskyella 2167 no rank 2 2615021 0 2158 1936080 1 species 980 Winogradskyella sp. J14-2 0 0 1178 Winogradskyella sp. PG-2 species 1 754409 2700084 1 genus 1503 0 1850246 1 species 1503 Lutibacter sp. LPB0138 0 3 225842 1 genus 1776 Formosa 0 8 no rank 2644710 2 0 1768 770 Formosa sp. Hel1_33_131 0 1336794 1 species 998 Formosa sp. Hel3_A1_48 0 1 1336795 species 0 932 genus 1 1209327 0 Flavivirga eckloniae 932 species 1 1803846 49 0 Nonlabens 2661 genus 1 5 363408 species 1 319236 0 721 Nonlabens sediminis no rank 2 2615035 0 1229 Nonlabens sp. MIC269 665 0 1 1476901 species Nonlabens sp. MB-3u-79 564 0 1 2058134 species 0 662 Nonlabens dokdonensis species 1 328515 genus 389486 1 0 390 no rank 1 2648869 0 390 1 1453352 species 390 Sediminicola sp. YIK13 0 3 111500 genus 1 Muricauda 554 0 1 111501 1 species Muricauda ruestringensis 366 0 0 Muricauda lutaonensis 187 species 516051 1 0 1130 no rank 61432 2 1150389 1 species Flavobacteriaceae bacterium UJ101 977 0 species 531844 1 0 153 Flavobacteriaceae bacterium 3519-10 1220 0 1 261827 genus 0 Algibacter alginicilyticus 1220 species 1 1736674 112040 1 genus 319 0 0 319 Zobellia galactanivorans species 63186 1 Polaribacter 7396 0 53 6 52959 genus 1 0 4157 no rank 3 196858 species 1 1529069 0 1426 Polaribacter sp. BM10 species 1 313598 0 Polaribacter sp. MED152 1462 1 2058137 species Polaribacter sp. ALD11 1269 0 0 Polaribacter vadi 1533 species 1 1774273 species 996801 1 0 1653 Polaribacter reichenbachii 3962 Capnocytophaga 29 0 15 1016 1 genus Capnocytophaga stomatis 318 0 1848904 1 species 202 Capnocytophaga ochracea 0 1 1018 species Capnocytophaga gingivalis 194 0 1017 1 species 164 Capnocytophaga haemolytica 0 45243 1 species 0 366 Capnocytophaga cynodegmi species 1 28189 1451 0 2640652 6 no rank 0 288 Capnocytophaga sp. oral taxon 878 species 1316596 1 1316593 1 species 204 Capnocytophaga sp. oral taxon 864 0 1945658 1 species 273 Capnocytophaga sp. H4358 0 1 209053 species 252 Capnocytophaga sp. ChDC OS43 0 species 1 1705617 0 Capnocytophaga sp. oral taxon 323 187 Capnocytophaga sp. H2931 247 0 1 1945657 species 1 327575 species 208 Capnocytophaga leadbetteri 0 1 1019 species 562 Capnocytophaga sputigena 0 0 Capnocytophaga canimorsus 468 species 28188 1 0 29 Lacinutrix 3434 genus 1 4 291183 2647285 2 no rank 2220 0 2057808 1 species Lacinutrix sp. Bg11-31 1071 0 Lacinutrix sp. 5H-3-7-4 1149 0 1 983544 species 0 Lacinutrix venerupis 1185 species 1 1486034 0 408 family 1333713 2 267986 2 genus 1 Owenweeksia 408 0 6 species 1 253245 0 Owenweeksia hongkongensis 402 1 0 2705 Blattabacteriaceae 1 family 39782 10 genus 1 34098 9 0 30 Blattabacterium 2704 0 Blattabacterium cuenoti 357 species 1653831 1 0 1945 no rank 2647581 6 1186051 1 species 358 Blattabacterium sp. (Blaberus giganteus) 0 280 Blattabacterium sp. (Blattella germanica) 0 624186 1 species Blattabacterium sp. (Periplaneta americana) 342 0 367488 1 species 375 Blattabacterium sp. (Nauphoeta cinerea) 0 1 1316444 species species 367806 1 0 330 Blattabacterium sp. (Blatta orientalis) 39768 1 species Blattabacterium sp. (Mastotermes darwiniensis) 260 0 1 164514 species 372 Blattabacterium punctulatus 0 0 531 family 1853230 2 0 2 Fluviicola 531 genus 1 332102 2 0 529 Fluviicola taffensis species 191579 1 396 0 1755828 2 family 1755829 2 genus 1 Ichthyobacterium 396 0 5 species 1 242600 0 391 Ichthyobacterium seriolicida 0 8142 family 2762318 20 29 0 Elizabethkingia 2725 genus 1 308865 6 species 1 1117645 0 908 Elizabethkingia anophelis species 1 1756150 0 Elizabethkingia genomosp. 4 351 0 578 Elizabethkingia miricola species 1 172045 Elizabethkingia genomosp. 3 470 0 1 1756149 species species 1 238 0 Elizabethkingia meningoseptica 389 0 3975 no rank 2782232 10 9 59732 1 genus 3779 Chryseobacterium 0 23 3 2593645 no rank 1255 0 0 Chryseobacterium sp. StRB126 425 species 878220 1 0 493 Chryseobacterium sp. T16E-39 species 2015076 1 species 1721091 1 0 Chryseobacterium sp. IHB B 17019 337 Chryseobacterium glaciei 850 0 1 1685010 species Chryseobacterium piperi 411 0 558152 1 species 0 168 Chryseobacterium camelliae species 1 1265445 365 Chryseobacterium gallinarum 0 1324352 1 species 0 707 Chryseobacterium indologenes species 1 253 genus 2782228 1 0 196 1 536441 species 196 Chryseobacterium taklimakanense 0 1 0 726 Riemerella 1 genus 2 34084 0 Riemerella anatipestifer 725 species 1 34085 338 0 1 28250 genus 28251 1 species Ornithobacterium rhinotracheale 338 0 378 0 1 1013 genus 378 Weeksella virosa 0 1014 1 species 0 750 no rank 313602 4 0 2 165 Candidatus Walczuchella 1 genus 2 1940138 species 1 1415657 0 163 Candidatus Walczuchella monophlebidarum 336809 2 1 genus 585 Candidatus Sulcia 2 0 species 1 336810 0 Candidatus Sulcia muelleri 583 Bacteroidia 7017 13 0 60 200643 class 1 19 0 Bacteroidales 5530 order 1 171549 50 0 156 family 1 1853231 1 283168 genus 156 0 0 Odoribacter splanchnicus 156 species 28118 1 1 family 171551 4 6 0 204 Porphyromonadaceae 1 genus 836 3 0 7 198 Porphyromonas 28123 1 species Porphyromonas asaccharolytica 76 0 species 1 837 0 Porphyromonas gingivalis 115 0 4 Tannerellaceae 475 family 1 6 2005525 Parabacteroides 276 4 0 375288 3 genus 1 0 135 Parabacteroides distasonis species 823 1 0 137 no rank 1 2649774 1 2025876 species Parabacteroides sp. CT06 137 0 0 195 genus 2 195950 0 Tannerella forsythia 105 species 28112 1 no rank 1 2620507 0 90 1 712710 species Tannerella sp. oral taxon HOT-286 90 0 3 171550 family 1 Rikenellaceae 145 0 1 0 74 genus 239759 1 species 1 214856 0 Alistipes finegoldii 74 70 0 1611681 1 genus species 1 1433126 0 Mucinivorans hirudinis 70 0 362 family 1 2005523 346096 1 genus 362 0 362 Paludibacter propionicigenes 0 1 185300 species 0 1365 family 815 10 Bacteroides 1365 12 0 10 816 genus 1 1 1796613 species 135 Bacteroides caecimuris 0 0 125 Bacteroides heparinolyticus species 1 28113 Bacteroides fragilis 283 0 817 1 species Bacteroides ovatus 156 0 1 28116 species 1 47678 species 128 Bacteroides caccae 0 174 Bacteroides cellulosilyticus 0 246787 1 species Bacteroides helcogenes 111 0 290053 1 species species 1 28119 0 Bacteroides zoogleoformans 56 0 Bacteroides thetaiotaomicron 185 species 1 818 family 1 171552 11 1 0 Prevotellaceae 1003 838 10 genus 1 Prevotella 1002 16 0 Prevotella ruminicola 85 0 839 1 species 52227 1 species 50 Prevotella dentalis 0 0 Prevotella jejuni 113 species 1177574 1 0 160 no rank 1 2638335 652716 1 species 160 Prevotella sp. oral taxon 299 0 0 Prevotella melaninogenica 92 species 1 28132 species 28131 1 0 283 Prevotella intermedia 28129 1 species 54 Prevotella denticola 0 1 76123 species 61 Prevotella enoeca 0 88 Prevotella fusca 0 589436 1 species 0 61 family 2005519 1 1 397864 genus 61 0 0 Barnesiella viscericola 61 species 1 397865 Dysgonamonadaceae 531 0 2 6 2005520 family 1 genus 1 294702 2 0 3 Proteiniphilum 142 species 1 1642647 0 139 Proteiniphilum saccharofermentans 1 307628 genus 84 0 1 1642646 species Petrimonas mucosa 84 0 1784836 2 genus 1 Fermentimonas 303 1 0 0 302 Fermentimonas caenicola species 1562970 1 185291 1 no rank 123 0 species 1 1400053 0 123 Bacteroidales bacterium CF no rank 333046 5 0 1086 3 909656 genus 542 0 species 376805 1 0 246 Bacteroides salanitronis 150 Bacteroides dorei 0 357276 1 species 821 1 species Bacteroides vulgatus 146 0 511434 2 1 genus 544 Candidatus Azobacteroides 0 3 species 1 511435 0 541 Candidatus Azobacteroides pseudotrichonymphae 0 1 1474 Marinilabiliales 1 order 1970189 9 1 0 398 Prolixibacteraceae 1 family 3 1471398 2 1471399 1 genus 397 Draconibacterium 0 3 0 Draconibacterium orientale 394 species 1 1168034 259 0 1970190 1 family 0 259 genus 1970191 1 1307839 1 species Salinivirga cyanobacteriivorans 259 0 2 1573805 family 1 Marinifilaceae 547 0 1 genus 1 2060722 0 546 species 1 1717717 0 546 Marinifilaceae bacterium SPP2 family 2 558415 0 269 269 Alkalitalea 0 5 2 1193324 1 genus species 1 889453 0 Alkalitalea saponilacus 264 23 117747 1 class 6019 Sphingobacteriia 3 0 1 order 22 200666 13 0 6016 Sphingobacteriales 21 84566 family 1 Sphingobacteriaceae 6003 14 0 434 0 1 929509 genus 434 Solitalea canadensis 0 1 995 species 6 28453 1 genus 1530 Sphingobacterium 14 0 species 1010 1 0 Sphingobacterium mizutaii 262 1254 0 2609468 4 no rank species 743722 1 0 243 Sphingobacterium sp. 21 1 2003121 species Sphingobacterium sp. G1-14 349 0 1 1933220 species 308 Sphingobacterium sp. B29 0 1 1538644 species Sphingobacterium sp. ML3W 354 0 Mucilaginibacter 852 0 7 4 423349 genus 1 190 0 2617802 1 no rank species 1300914 1 0 Mucilaginibacter sp. PAMC 26640 190 0 254 Mucilaginibacter sp. BJC16-A31 species 1 1234841 Mucilaginibacter gotjawali 401 0 1550579 1 species 0 865 no rank 84568 1 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 865 species 1 1986952 1649482 2 genus 1 Pseudopedobacter 418 2 0 species 151895 1 0 416 Pseudopedobacter saltans Pedobacter 1890 0 18 84567 6 genus 1 0 Pedobacter ginsengisoli 450 species 1 363852 species 1 984 0 308 Pedobacter heparinus 430522 1 species Pedobacter steynii 277 0 370 0 1 2628915 no rank 0 Pedobacter sp. PACM 27299 370 species 1 1727164 188932 1 species Pedobacter cryoconitis 467 0 Chitinophagia 2055 0 2 15 1853228 class 1 5 0 2053 Chitinophagales 1 order 1853229 14 Chitinophagaceae 2048 0 12 13 563835 family 1 genus 2 79328 0 392 200 Chitinophagaceae bacterium 13 0 2029983 1 species 0 192 Chitinophaga pinensis species 1 79329 genus 649460 1 0 201 1 477680 species Filimonas lacunae 201 0 1 0 Niabella 275 genus 1 3 379899 species 446683 1 0 Niabella soli 142 1176587 1 species 132 Niabella ginsenosidivorans 0 genus 1 2 1769012 2 0 Arachidicoccus 358 2636138 1 no rank 356 0 species 1 1850526 0 Arachidicoccus sp. BS20 356 genus 1 2 354354 0 2 Niastella 462 species 354356 1 0 460 Niastella koreensis 398041 2 1 genus 348 Flavisolibacter 2 0 346 Flavisolibacter tropicus 0 1492898 1 species 0 2 Saprospiria 599 class 1 1937959 6 order 1 5 1936988 3 0 Saprospirales 597 2 1937961 family 359 0 2349 2 genus 1 Haliscomenobacter 359 0 4 species 1 2350 0 Haliscomenobacter hydrossis 355 0 235 family 2 89374 2 0 235 Saprospira 1 genus 1007 2 species 1008 1 0 233 Saprospira grandis 1100069 5 1 order 459 Bacteroidetes Order II. Incertae sedis 0 4 0 3 Rhodothermaceae 455 family 1 4 563843 190 0 1 1196022 no rank 1 1779382 species 190 Rhodothermaceae bacterium RA 0 131 0 146918 1 genus 146919 1 species 131 Salinibacter ruber 0 131 0 29548 1 genus 131 Rhodothermus marinus 0 1 29549 species 0 726 phylum 5 1134404 726 Ignavibacteria 7 0 795747 5 1 class 0 719 order 4 795748 2 0 Ignavibacteriaceae 560 family 1 3 795749 1 0 Ignavibacterium 558 genus 1 2 795750 591197 1 species 557 Ignavibacterium album 0 family 1334117 1 0 159 0 159 genus 1134403 1 0 Melioribacter roseus 159 species 1134405 1 21 1090 phylum 1620 0 0 11 Chlorobia 1620 class 1 21 191410 Chlorobiales 1609 14 0 191411 20 order 1 1 family 19 191412 0 11 1595 Chlorobiaceae no rank 8 274493 0 912 1099 3 1 genus 151 Pelodictyon 0 2 34090 1 species 94 Pelodictyon phaeoclathratiforme 0 1 1100 species Pelodictyon luteolum 55 0 761 Chlorobium 19 0 5 1091 1 genus 0 391 Chlorobium phaeobacteroides species 1096 1 species 337090 1 0 Chlorobium chlorochromatii 117 78 Chlorobium phaeovibrioides 0 1094 1 species species 1092 1 0 Chlorobium limicola 156 331 Prosthecochloris 0 15 1101 5 1 genus 69 Prosthecochloris aestuarii 0 1 1102 species no rank 2632826 3 0 247 1 1974213 species Prosthecochloris sp. HL-130-GSB 93 0 1 1868325 species Prosthecochloris sp. CIB 2401 84 0 0 70 Prosthecochloris sp. GSB1 species 281093 1 0 131 genus 1 100715 0 Chloroherpeton thalassium 131 species 1 100716 210 Chlorobaculum 17 0 256319 4 1 genus 0 86 Chlorobaculum parvum species 274539 1 Chlorobaculum tepidum 52 0 1 1097 species 274537 1 species Chlorobaculum limnaeum 55 0 2 65842 phylum 350 0 class 2 204430 0 350 218872 2 order 350 0 0 2 Fibrobacteraceae 350 family 1 2 204431 0 348 genus 1 832 348 Fibrobacter succinogenes 0 1 833 species 628 0 8 142182 phylum 3 0 628 Gemmatimonadetes 1 class 8 219685 1 order 219686 7 2 0 625 Gemmatimonadales 219687 6 family 1 Gemmatimonadaceae 623 0 3 genus 1 2 1706036 1 0 Gemmatirosa 373 0 372 Gemmatirosa kalamazoonesis species 861299 1 genus 1 173479 3 1 0 Gemmatimonas 247 species 173480 1 0 125 Gemmatimonas aurantiaca 1379270 1 species Gemmatimonas phototrophica 121 0 259 0 2 456828 phylum 1 genus 2 456826 0 3 259 Candidatus Cloacimonas species 456827 1 0 256 Candidatus Cloacimonas acidaminovorans 0 1050776 clade 1578 1783272 phylum 1297 32 0 2455 class 1 188787 32 0 12 Deinococci 2455 4 0 1122 Thermales 1 order 15 68933 1 family 14 188786 4 0 1118 Thermaceae 0 65 genus 186191 1 1 186192 species Marinithermus hydrothermalis 65 0 270 8 1 genus 742 Thermus 0 6 species 1 37636 0 71 Thermus scotoductus 86 Thermus aquaticus 0 1 271 species species 1 456163 0 Thermus parvatiensis 77 0 58 Thermus brockianus species 56956 1 species 1 274 0 265 Thermus thermophilus 88 0 2619321 1 no rank 1111069 1 species Thermus sp. CCB_US3_UF1 88 0 species 56957 1 0 Thermus oshimai 91 genus 208447 1 0 131 187137 1 species 131 Oceanithermus profundus 0 176 Meiothermus 5 0 3 65551 1 genus Meiothermus silvanus 70 0 52022 1 species 1 277 species 101 Meiothermus ruber 0 1191 Deinococcales 11 0 15 118964 1 order 14 183710 1 family 1180 Deinococcaceae 0 5 Deinococcus 1175 0 16 13 1298 genus 1 97 Deinococcus radiodurans 0 1299 1 species 1 309887 species Deinococcus maricopensis 125 0 species 1 1182571 0 Deinococcus swuensis 110 species 1 1768108 0 Deinococcus actinosclerus 84 1 502394 species Deinococcus gobiensis 99 0 1309411 1 species 104 Deinococcus soli Cha et al. 2016 0 species 1 1182568 0 Deinococcus puniceus 92 Deinococcus proteolyticus 181 0 1 55148 species 310783 1 species 69 Deinococcus deserti 0 species 68909 1 0 Deinococcus geothermalis 65 0 Deinococcus peraridilitoris 62 species 432329 1 no rank 1 2623546 0 71 Deinococcus sp. NW-56 71 0 1 2080419 species 130 0 2762275 1 order 130 0 1 332247 family 0 130 genus 1 332248 0 Truepera radiovictrix 130 species 332249 1 0 122 phylum 3 67819 0 2 Fimbriimonadia 122 class 1 1663419 3 order 2 1663425 0 120 family 1663426 2 0 120 1 genus 1005038 2 0 1 120 Fimbriimonas Fimbriimonas ginsengisoli 119 0 1005039 1 species 0 1719 phylum 200795 32 7 301297 class 256 0 1 order 1202465 5 1 0 191 Dehalococcoidales family 1 1202464 4 0 1 Dehalococcoidaceae 190 1 0 Dehalococcoides 189 genus 1 3 61434 species 1 61435 0 Dehalococcoides mccartyi 137 237581 1 no rank 51 0 1522671 1 species 51 Dehalococcoides sp. UCH007 0 0 65 genus 2 670486 Dehalogenimonas lykanthroporepellens 23 0 1 552810 species species 1 1839801 0 Dehalogenimonas formicexedens 42 1 class 1382928 5 4 0 285 Ardenticatenia 281 Ardenticatenales 0 3 1382929 4 1 order family 1 1382930 3 0 1 Ardenticatenaceae 278 1988031 2 1 genus 277 Candidatus Promineofilum 0 1 Candidatus Promineofilum breve 276 0 1 1806508 species 475962 3 class 146 0 0 146 order 3 475963 1 0 Caldilineaceae 146 family 1 3 475964 145 Caldilinea 2 0 233191 2 1 genus 0 Caldilinea aerophila 143 species 1 133453 class 1 9 32061 2 0 Chloroflexia 681 order 1 32064 8 0 1 Chloroflexales 679 255 0 1508595 3 suborder family 1508635 3 0 255 1 genus 3 120961 2 0 255 Roseiflexus 121 0 1 2609473 no rank 1 357808 species Roseiflexus sp. RS-1 121 0 120962 1 species Roseiflexus castenholzii 132 0 4 1508594 suborder 423 0 0 423 family 4 1106 0 3 Chloroflexus 423 genus 1 1107 4 species 152260 1 0 Chloroflexus aggregans 186 1108 2 species 1 Chloroflexus aurantiacus 234 117 0 Chloroflexus sp. Y-400-fl 117 0 1 480224 strain 0 2 Anaerolineae 187 class 1 5 292625 0 185 order 292629 4 1 family 292628 4 0 1 185 Anaerolineaceae 0 53 genus 1 2019482 Brevefilum fermentans 53 0 1986204 1 species 1 233189 genus 71 0 0 Anaerolinea thermophila 71 species 167964 1 no rank 1 1324991 0 60 60 Anaerolineaceae bacterium oral taxon 439 0 1889813 1 species 3 189775 class 164 0 subclass 85000 2 0 119 0 1 Sphaerobacterales 119 order 1 2 85001 suborder 255728 1 0 118 family 85002 1 0 118 1 2056 genus 118 0 118 Sphaerobacter thermophilus 0 1 2057 species order 1 189776 0 45 45 0 189777 1 family genus 1 499 0 45 0 Thermomicrobium roseum 45 species 1 500 201174 596 1 phylum 93463 Actinobacteria 8 0 4 1497346 class 1396 0 588673 4 order 1 Solirubrobacterales 1396 0 3 3 320583 family 1 Conexibacteraceae 1393 2 0 Conexibacter 1391 0 5 191494 2 genus 1 species 1 191495 0 Conexibacter woesei 1386 1 class 552 1760 0 334 90026 Actinobacteria 2 0 560 Geodermatophilales 1 order 1643682 7 1 family 85030 6 8 0 558 Geodermatophilaceae 175 Modestobacter 2 0 2 88138 1 genus species 477641 1 0 Modestobacter marinus 173 1 genus 38501 2 0 3 172 Blastococcus 138336 1 species Blastococcus saxobsidens 169 0 203 0 1 1860 genus species 1861 1 0 203 Geodermatophilus obscurus Micrococcales 13389 52 0 85006 128 order 1 family 1 3 145360 1 0 Sanguibacteraceae 227 1 0 Sanguibacter 226 genus 1 2 60919 species 60920 1 0 225 Sanguibacter keddieii 577468 1 no rank 42 0 1 2038 genus 42 0 42 Tropheryma whipplei 0 2039 1 species 2 85019 family 1 Brevibacteriaceae 200 0 1 genus 1696 1 0 199 0 199 Brevibacterium linens species 1 1703 56 0 85022 2 family 56 Jonesia 0 1 43673 2 1 genus species 43674 1 0 Jonesia denitrificans 55 1 family 145357 6 0 3 360 Dermacoccaceae genus 745364 1 0 147 Luteipulveratus mongoliensis 147 0 1 571913 species Dermacoccus 127 0 1 2 57495 genus 1 Dermacoccus nishinomiyaensis 126 0 1 1274 species 83 Kytococcus 3 0 57499 2 1 genus Kytococcus sedentarius 80 0 1276 1 species 85023 42 family 1 Microbacteriaceae 5015 26 0 0 48 genus 1 1434032 0 Pontimonas salivibrio 48 species 1159327 1 0 64 genus 1 1705353 species 1 708131 0 Aurantimicrobium minutum 64 0 108 genus 518733 1 0 Microterricola viridarii 108 species 1 412690 0 227 genus 1 33877 453304 1 species 227 Agromyces aureus 0 genus 1 2034 4 0 3 Curtobacterium 449 154 Curtobacterium pusillum 0 69373 1 species 2 257496 no rank 292 0 species 1 1905847 0 Curtobacterium sp. BH-2-1-1 107 185 Curtobacterium sp. MR_MD2014 0 1 1561023 species 0 243 genus 33886 2 0 Rathayibacter toxicus 149 species 145458 1 Rathayibacter tritici 94 0 33888 1 species 654 0 1 447237 genus no rank 1 2626248 0 654 1 1795630 species Frondihabitans sp. PAMC 28766 654 0 110932 1 genus 300 0 1 1575 species 300 Leifsonia xyli 0 337004 2 1 genus 79 Microcella 1 0 0 78 Microcella alkaliphila species 279828 1 3 69578 genus 1 Cryobacterium 207 1 0 0 109 Cryobacterium arcticum species 1 670052 1 2649013 no rank 97 0 97 Cryobacterium sp. LW097 0 1 1978566 species 0 128 genus 1 1759331 species 1 1619308 0 Cnuibacter physcomitrellae 128 1655488 3 no rank 106 0 0 106 clade 1655489 3 3 529883 1 genus 106 Rhodoluna 0 3 0 Rhodoluna lacicola 41 species 1 529884 1 535712 species 62 Candidatus Rhodoluna planktonica 0 6 1573 1 genus 801 Clavibacter 11 0 Clavibacter michiganensis 790 0 172 5 28447 species 1 0 130 Clavibacter nebraskensis subspecies 31963 1 Clavibacter capsici 152 0 1874630 1 subspecies subspecies 31964 1 0 195 Clavibacter sepedonicus Clavibacter insidiosus 141 0 33014 1 subspecies 1575 Microbacterium 0 21 14 33882 1 genus 169 Microbacterium hominis 0 162426 1 species 0 104 Microbacterium aurum species 36805 1 0 114 Microbacterium paludicola species 300019 1 0 969 no rank 8 2609290 0 Microbacterium sp. str. 'China' 77 species 1 2103230 species 1 1696072 0 Microbacterium sp. CGR1 97 species 1 1938334 0 98 Microbacterium sp. TPU 3598 species 1916917 1 0 Microbacterium sp. 1.5R 97 1906742 1 species 224 Microbacterium sp. BH-3-3-3 0 species 1 1714373 0 193 Microbacterium sp. No. 7 species 1 367477 0 Microbacterium sp. XT11 95 0 88 Microbacterium sp. PAMC 28756 species 1795053 1 0 Microbacterium chocolatum 72 species 1 84292 species 2033 1 0 Microbacterium testaceum 126 0 108 family 2 85018 2 0 108 Dermatophilus 1 genus 1862 2 species 1 1863 0 Dermatophilus congolensis 106 0 2 670 Cellulomonadaceae 1 family 6 85016 Cellulomonas 668 5 0 1707 5 genus 1 0 147 no rank 1 2620175 Cellulomonas sp. PSBB021 147 0 2003551 1 species 1 1711 species 208 Cellulomonas flavigena 0 0 138 Cellulomonas gilvus species 1 11 0 170 Cellulomonas fimi species 1708 1 85017 8 1 family 1013 Promicromonosporaceae 0 8 genus 1 186188 0 245 245 Xylanimonas cellulosilytica 0 186189 1 species 363 Isoptericola 0 1 3 254250 1 genus species 1 372663 0 211 Isoptericola dokdonensis 1 139208 species 151 Isoptericola variabilis 0 genus 1 157920 3 0 1 Cellulosimicrobium 397 Cellulosimicrobium cellulans 207 0 1710 1 species 2624466 1 no rank 189 0 species 1980001 1 0 189 Cellulosimicrobium sp. TH-20 189 0 1 125316 family 0 189 genus 1 84756 species 84757 1 0 189 Beutenbergia cavernae Intrasporangiaceae 587 5 0 7 85021 family 1 152 Serinicoccus 0 2 2 265976 1 genus 150 Serinicoccus sp. JLT9 0 1758689 1 species genus 53357 1 0 144 1 53358 species 144 Intrasporangium calvum 0 0 2 Janibacter 143 genus 1 53457 2 857417 1 species 141 Janibacter indicus 0 genus 267408 1 0 143 1 2663846 no rank 143 0 143 Arsenicicoccus sp. oral taxon 190 0 1 1658671 species 21 0 3361 Micrococcaceae 1 family 36 1268 0 58 genus 1 1868332 0 58 Neomicrococcus aestuarii species 1 556325 0 1 50 Renibacterium 1 genus 2 1645 species 1646 1 0 Renibacterium salmoninarum 49 90 0 1 2078575 genus species 1 1618207 0 Arthrobacter sp. IHBB 11108 90 1269 2 genus 1 Micrococcus 91 1 0 0 90 Micrococcus luteus species 1 1270 genus 32207 2 0 126 0 Rothia dentocariosa 46 species 1 2047 0 Rothia mucilaginosa 80 species 1 43675 138 0 1 596707 genus species 1 37927 0 Sinomonas atrocyanea 138 0 85 genus 1742992 1 Paenarthrobacter aurescens 85 0 1 43663 species 1955 Arthrobacter 22 0 15 1663 1 genus Arthrobacter alpinus 256 0 656366 1 species 103 Arthrobacter crystallopoietes 0 1 37928 species 1574 0 12 235627 no rank species 1690248 1 0 Arthrobacter sp. LS16 74 species 1 1357915 0 87 Arthrobacter sp. QXT-31 species 1 1704044 0 Arthrobacter sp. ERGS1:01 160 0 Arthrobacter sp. YC-RL1 82 species 1652545 1 1 1118963 species 69 Arthrobacter sp. Rue61a 0 290399 1 species 115 Arthrobacter sp. FB24 0 1 1771959 species 76 Arthrobacter sp. ATCC 21022 0 145 Arthrobacter sp. PAMC 25486 0 1 1494608 species 2020486 1 species Arthrobacter sp. YN 65 0 120 Arthrobacter sp. U41 0 1849032 1 species species 1 2079227 0 508 Arthrobacter sp. PGP41 species 1806905 1 0 73 Arthrobacter sp. ZXY-2 4 57493 genus 1 Kocuria 268 6 0 species 72000 1 0 54 Kocuria rhizophila 89 Kocuria palustris 0 1 71999 species 119 Kocuria flava 0 446860 1 species 4 1742993 genus 1 Pseudarthrobacter 361 2 0 107 Pseudarthrobacter chlorophenolicus 0 85085 1 species 101 Pseudarthrobacter sulfonivorans 0 1 121292 species 151 Pseudarthrobacter phenanthrenivorans 0 1 361575 species 1 genus 1742989 2 0 2 118 Glutamicibacter species 1 256701 0 Glutamicibacter arilaitensis 116 0 7 1509 Dermabacteraceae 1 family 11 85020 10 0 1331 Brachybacterium 1 genus 6 43668 2017485 1 species 144 Brachybacterium sp. VR2415 0 0 Brachybacterium ginsengisoli 149 species 1 1331682 no rank 2623841 1 0 138 0 Brachybacterium sp. P6-10-X1 138 species 1903186 1 750 Brachybacterium sp. VM2412 0 1 2017484 species 140 Brachybacterium faecium 0 43669 1 species genus 1 2 472568 0 1 Devriesea 109 108 Devriesea agamarum 0 472569 1 species Dermabacter 62 1 0 2 36739 genus 1 0 Dermabacter vaginalis 61 species 1630135 1 1 order 17 2037 1 0 999 Actinomycetales 2049 16 family 1 Actinomycetaceae 998 5 0 56 0 1 1069494 genus 0 56 Trueperella pyogenes species 1 1661 1 2529408 genus 49 0 49 Actinomyces meyeri 0 1 52773 species 38 Arcanobacterium 0 2 2 28263 1 genus species 1 28264 0 Arcanobacterium haemolyticum 36 2050 1 genus 111 0 111 Mobiluncus curtisii 0 2051 1 species 0 35 genus 1 1653174 35 Actinotignum schaalii 0 59505 1 species 704 Actinomyces 14 0 9 1654 1 genus 1 111015 species Actinomyces radicidentis 146 0 0 34 Actinomyces sp. VUL4_3 species 1 1912795 0 19 Actinomyces pacaensis species 1852377 1 91 Actinomyces oris 0 1 544580 species 3 2609248 no rank 329 0 Actinomyces sp. oral taxon 897 99 0 1 2081702 species species 1 712122 0 130 Actinomyces sp. oral taxon 414 0 100 Actinomyces sp. Chiba101 species 1851395 1 species 1960083 1 0 71 Actinomyces gaoshouyii order 2 622450 0 103 2 622451 family 1 Actinopolysporaceae 103 0 1 102 0 1 1849 genus Actinopolyspora erythraea 102 0 414996 1 species 0 123 no rank 1643818 1 0 123 genus 1 147067 0 123 Thermobispora bispora species 2006 1 order 85008 18 0 2753 2753 Micromonosporaceae 18 0 18 28056 1 family 0 3 591 Micromonospora 1 genus 1873 4 Micromonospora aurantiaca 197 0 47850 1 species no rank 2617518 1 0 212 species 1 648999 0 212 Micromonospora sp. L5 1003110 1 species 179 Verrucosispora maris 0 genus 1 4 673534 0 3 Plantactinospora 769 766 0 2631981 3 no rank species 2108470 1 0 223 Plantactinospora sp. BC1 species 1 2071627 0 Plantactinospora sp. BB1 317 2024580 1 species Plantactinospora sp. KBS50 226 0 1 genus 168694 3 2 0 283 Salinispora species 168695 1 0 130 Salinispora tropica 1 168697 species 151 Salinispora arenicola 0 Actinoplanes 1092 0 4 6 1865 genus 1 species 1866 1 0 208 Actinoplanes missouriensis no rank 3 2626549 0 681 0 Actinoplanes sp. SE50/110 233 species 134676 1 0 215 Actinoplanes sp. N902-109 species 1 649831 2033844 1 species 233 Actinoplanes sp. SE50 0 199 Actinoplanes friuliensis 0 196914 1 species 85007 157 1 order 19676 Corynebacteriales 0 100 family 316606 1 0 69 286801 1 genus 69 0 1 286802 species 69 Segniliparus rotundus 0 family 1 1762 56 18 0 Mycobacteriaceae 8702 0 2008 genus 1866885 13 Mycobacterium phlei 150 0 1771 1 species 0 Mycobacterium chubuense 168 species 1800 1 Mycobacterium neoaurum 108 0 1795 1 species species 1 1772 0 160 Mycobacterium smegmatis Mycobacterium vaccae 185 0 1 1810 species species 1 36814 0 Mycobacterium rhodesiae 97 species 1 1791 0 216 Mycobacterium aurum species 134601 1 0 154 Mycobacterium goodii species 1804 1 0 Mycobacterium gilvum 228 758802 1 species 128 Mycobacterium litorale 0 114 Mycobacterium thermoresistibile 0 1 1797 species 110539 1 species 186 Mycobacterium vanbaalenii 0 0 Mycobacterium fortuitum 114 species 1 1766 81 0 1 697025 genus 1 639313 species 81 Hoyosella subflava 0 genus 1073531 2 0 404 875328 1 species 187 Mycobacterium sinense 0 Mycobacterium terrae 217 0 1 1788 species 34 1763 1 genus 4705 Mycobacterium 162 0 species 1809 1 0 123 Mycobacterium ulcerans species group 2249310 1 0 130 species 722731 1 0 130 Mycobacterium shigaense 568 0 77643 4 species group species 1 1773 3 0 181 Mycobacterium tuberculosis 495 1 33894 biotype 152 Mycobacterium africanum 0 biotype 1 1765 0 162 Mycobacterium bovis 1 78331 species 73 Mycobacterium canettii 0 1 1781 species 285 Mycobacterium marinum 0 0 192 Mycobacterium kansasii species 1 1768 0 Mycobacterium liflandii 162 species 261524 1 1769 1 species Mycobacterium leprae 23 0 120793 8 species group 1124 0 species 1138383 1 0 49 Mycobacterium paraintracellulare 701042 1 species Mycobacterium marseillense 81 0 Mycobacterium colombiense 121 0 1 339268 species 1 species 4 1767 114 0 379 Mycobacterium intracellulare 73 Mycobacterium yongonense 0 1 1203599 subspecies subspecies 222805 1 0 Mycobacterium chimaera 142 0 Mycobacterium indicus pranii 50 subspecies 1 35617 Mycobacterium avium 494 0 1764 1 species Mycobacterium haemophilum 65 0 29311 1 species Mycobacterium dioxanotrophicus 194 0 1 482462 species 1677 0 13 2642494 no rank 1 1168287 species 60 Mycobacterium sp. MOTT36Y 0 150 Mycobacterium sp. YC-RL4 0 1682113 1 species 0 Mycobacterium sp. WY10 112 species 1 1920667 species 1 164756 0 108 Mycobacterium sp. MCS 0 Mycobacterium sp. KMS 126 species 1 189918 species 1545728 1 0 Mycobacterium sp. EPa45 111 0 Mycobacterium sp. PYR15 121 species 1 2051552 0 Mycobacterium sp. JLS 117 species 164757 1 1 212767 species 281 Mycobacterium sp. JS623 0 77 Mycobacterium sp. QIA-37 0 1 1561223 species Mycobacterium sp. NRRL B-3805 108 0 1570328 1 species 128 Mycobacterium sp. VKM Ac-1817D 0 1273687 1 species 0 178 Mycobacterium sp. djl-10 species 1879023 1 genus 670516 5 0 1486 137 Mycobacterium immunogenum 0 1 83262 species Mycobacterium chelonae 82 0 1774 1 species species 1 1578165 0 82 Mycobacterium saopaulense 1 36809 species Mycobacterium abscessus 1119 0 1 1520670 species 66 Mycobacterium stephanolepidis 0 0 234 family 85029 2 234 0 37914 2 genus 1 499555 species Dietzia timorensis 73 0 0 161 no rank 1 2617939 species 712270 1 0 Dietzia sp. oral taxon 368 161 0 39 no rank 697024 2 Lawsonella 39 0 1 1847725 2 genus 1 species 1 1528099 0 Lawsonella clevelandensis 38 family 1 31 85025 0 16 Nocardiaceae 5046 3623 Rhodococcus 82 0 23 1827 1 genus 218 Rhodococcus ruber 0 1830 1 species Rhodococcus qingshengii 132 0 1 334542 species 1 103816 species Rhodococcus pyridinivorans 183 0 1833 1 species Rhodococcus erythropolis 238 0 Rhodococcus hoagii 173 0 43767 1 species species 1 132919 0 Rhodococcus jostii 209 1 1829 species 128 Rhodococcus rhodochrous 0 0 531 Rhodococcus opacus species 37919 1 192944 12 no rank 1376 0 Rhodococcus sp. WMMA185 79 0 1 679318 species species 1 1570939 0 Rhodococcus sp. 2G 105 94 Rhodococcus sp. YL-1 0 1045808 1 species 75 Rhodococcus sp. 008 0 1 1723645 species 0 Rhodococcus sp. WB1 201 species 1 1033922 1727214 1 species 93 Rhodococcus sp. H-CA8f 0 188 Rhodococcus sp. MTM3W5.2 0 1805827 1 species 135 Rhodococcus sp. p52 0 935199 1 species species 1807790 1 0 64 Rhodococcus sp. BH4 0 Rhodococcus sp. PBTS 2 85 species 1653479 1 1564114 1 species Rhodococcus sp. B7740 99 0 0 158 Rhodococcus sp. PBTS 1 species 1653478 1 0 212 Rhodococcus aetherivorans species 1 191292 Rhodococcus fascians 141 0 1 1828 species 1407 Nocardia 9 0 1817 7 1 genus 37330 1 species Nocardia nova 182 0 0 Nocardia terpenica 154 species 1 455432 Nocardia seriolae 184 0 37332 1 species 0 373 Nocardia brasiliensis species 1 37326 1 135487 species 276 Nocardia cyriacigeorgica 0 1 37329 species 229 Nocardia farcinica 0 family 1 52 1653 10 0 Corynebacteriaceae 4275 genus 1 51 1716 0 42 Corynebacterium 4265 0 72 Corynebacterium glaucum species 1 187491 0 56 Corynebacterium epidermidicanis species 1 1050174 0 700 Corynebacterium uterequi species 1072256 1 35757 1 species Corynebacterium cystitidis 79 0 species 1 136857 0 69 Corynebacterium testudinoris 1231000 1 species Corynebacterium lactis 40 0 0 37 Corynebacterium stationis species 1705 1 349751 1 species 112 Corynebacterium marinum 0 49 Corynebacterium kutscheri 0 1 35755 species 1 42817 species Corynebacterium argentoratense 85 0 1 28028 species Corynebacterium flavescens 53 0 202 Corynebacterium glutamicum 0 1718 1 species species 1 1719 0 45 Corynebacterium pseudotuberculosis species 1 43771 0 Corynebacterium urealyticum 60 species 1 1697 0 50 Corynebacterium ammoniagenes 191493 1 species 107 Corynebacterium sphenisci 0 0 47 Corynebacterium mustelae species 571915 1 Corynebacterium atypicum 31 0 1 191610 species Corynebacterium camporealensis 31 0 1 161896 species Corynebacterium diphtheriae 95 0 1 1717 species species 1 156978 0 Corynebacterium imitans 65 Corynebacterium halotolerans 79 0 225326 1 species 575200 1 species Corynebacterium maris 92 0 Corynebacterium ulcerans 53 0 1 65058 species 0 33 Corynebacterium kroppenstedtii species 161879 1 0 70 Corynebacterium doosanense species 1 1121358 60 Corynebacterium glyciniphilum 0 1404244 1 species 0 100 Corynebacterium variabile species 1727 1 Corynebacterium crudilactis 75 0 1652495 1 species Corynebacterium aquilae 104 0 203263 1 species Corynebacterium phocae 34 0 161895 1 species 89154 1 species 74 Corynebacterium terpenotabidum 0 38289 1 species 86 Corynebacterium jeikeium 0 131 Corynebacterium striatum 0 43770 1 species species 1 146827 0 Corynebacterium simulans 58 80 [Brevibacterium] flavum 0 92706 1 species 100 Corynebacterium frankenforstense 0 1230998 1 species 96 0 2 2624378 no rank 0 Corynebacterium sp. NML98-0116 54 species 702967 1 0 42 Corynebacterium sp. ATCC 6931 species 1 1487956 0 65 Corynebacterium ureicelerivorans species 1 401472 species 1721 1 0 63 Corynebacterium callunae 0 45 Corynebacterium resistens species 1 258224 0 131 Corynebacterium humireducens species 1 1223514 1 169292 species 54 Corynebacterium aurimucosum 0 species 1 1408191 0 Corynebacterium deserti 77 70 Corynebacterium falsenii 0 1 108486 species 1 161899 species Corynebacterium singulare 45 0 0 Corynebacterium casei 55 species 160386 1 1 38305 species 141 Corynebacterium vitaeruminis 0 species 1 152794 0 Corynebacterium efficiens 67 320 0 85028 3 family 1 genus 2060 3 1 0 320 Tsukamurella species 2061 1 0 130 Tsukamurella paurometabola 0 189 Tsukamurella tyrosinosolvens species 1 57704 Gordoniaceae 891 2 0 9 85026 family 1 Gordonia 889 0 7 8 2053 genus 1 Gordonia phthalatica 103 0 1 1136941 species no rank 2 2657482 0 249 Gordonia sp. YC-JH1 122 0 1 2059875 species 0 127 Gordonia sp. KTR9 species 337191 1 species 84595 1 0 Gordonia polyisoprenivorans 126 2055 1 species 160 Gordonia terrae 0 132 Gordonia bronchialis 0 2054 1 species 1 1004901 species Gordonia iterans 112 0 85010 38 1 order 6707 Pseudonocardiales 6 0 2070 37 family 1 Pseudonocardiaceae 6701 0 51 0 3 613 Actinosynnema 1 genus 40566 3 271 Actinosynnema pretiosum 0 1 42197 species 40567 1 species Actinosynnema mirum 339 0 0 9 1547 Amycolatopsis 1 genus 7 1813 406 0 2 2618356 no rank species 1 1911175 0 216 Amycolatopsis sp. BJA-103 species 1896961 1 0 Amycolatopsis sp. AA4 190 species 1 208439 0 255 Amycolatopsis japonica Amycolatopsis methanolica 188 0 1 1814 species 0 303 Amycolatopsis mediterranei species 1 33910 Amycolatopsis orientalis 386 0 1 31958 species 1 genus 2 674734 1 0 206 Alloactinosynnema 0 205 no rank 1 2636053 0 Alloactinosynnema sp. L-07 205 species 1 1653480 11 0 Actinoalloteichus 1097 genus 1 65496 6 0 Actinoalloteichus hymeniacidonis 132 species 340345 1 2 2644606 no rank 403 0 190 Actinoalloteichus sp. AHMU CJ021 0 2072503 1 species 0 213 Actinoalloteichus sp. GBA129-24 species 1612551 1 1470176 1 species Actinoalloteichus hoggarensis 232 0 0 319 Actinoalloteichus sp. ADI127-7 species 1612552 1 244 0 165301 1 genus Lentzea guizhouensis 244 0 1 1586287 species 0 252 genus 1 2029 860235 1 species Kibdelosporangium phytohabitans 252 0 142577 1 genus 136 0 0 Prauserella marina 136 species 530584 1 8 1847 genus 1 Pseudonocardia 1711 0 15 0 Pseudonocardia dioxanivorans 243 species 1 240495 no rank 2619320 6 0 1453 298 Pseudonocardia sp. HH130630-07 0 1690815 1 species species 1096868 1 0 192 Pseudonocardia sp. EC080625-04 1 1096856 species Pseudonocardia sp. EC080619-01 232 0 species 1688404 1 0 Pseudonocardia sp. EC080610-09 263 0 Pseudonocardia sp. HH130629-09 200 species 1641402 1 Pseudonocardia sp. AL041005-10 268 0 1 445576 species 0 149 genus 1 1851 Saccharomonospora viridis 149 0 1852 1 species 43356 2 genus 1 Kutzneria 246 0 5 43357 1 species Kutzneria albida 241 0 200 Saccharopolyspora 1 0 1835 2 1 genus 1836 1 species Saccharopolyspora erythraea 199 0 genus 1 2071 2 2 0 Saccharothrix 249 0 247 Saccharothrix espanaensis species 103731 1 0 158 order 1643684 2 158 Nakamurellaceae 2 0 2 85031 1 family 53460 1 genus 156 0 species 53461 1 0 Nakamurella multipartita 156 249 0 2 622452 order 2 83778 family 1 Kineosporiaceae 249 3 0 0 246 genus 1 33981 0 246 Kineococcus radiotolerans species 131568 1 67 0 34102 Streptomycetales 1 order 82 85011 81 2062 family 1 Streptomycetaceae 34035 69 0 Kitasatospora 2265 8 0 5 2063 genus 1 309 0 2633591 1 no rank 309 Kitasatospora sp. MMS16-BH015 0 1 2018025 species 0 569 Kitasatospora setae species 1 2066 1894 1 species Kitasatospora aureofaciens 252 0 species 1 68173 0 1127 Kitasatospora albolonga 0 295 Streptomyces 31701 genus 1 75 1883 Streptomyces reticuli 268 0 1 1926 species 0 307 Streptomyces niveus species 1 193462 378 Streptomyces gilvosporeus 0 553510 1 species species 1 1888 0 905 Streptomyces albus species 1 379067 0 Streptomyces bingchenggensis 579 Streptomyces ambofaciens 352 0 1 1889 species 2 1477431 species group 1937 0 species 1 42239 0 Streptomyces sampsonii 265 Streptomyces coelicolor 1672 0 1 1902 species species 1 68570 0 Streptomyces albulus 3157 0 468 Streptomyces alfalfae species 1642299 1 species 1930 1 0 Streptomyces scabiei 387 24 2593676 no rank 8164 0 0 348 Streptomyces sp. CLI2509 species 1984801 1 species 2135430 1 0 479 Streptomyces sp. P3 307 Streptomyces sp. MOE7 0 1 1961713 species 1661694 1 species Streptomyces sp. Tue 6075 272 0 0 274 Streptomyces sp. TN58 species 1 234612 0 452 Streptomyces sp. 3211 species 1 1964449 0 Streptomyces sp. CMB-StM0423 381 species 1 2059884 1 1841249 species Streptomyces sp. RTd22 319 0 1 1725411 species Streptomyces sp. CdTB01 353 0 species 465541 1 0 Streptomyces sp. Mg1 369 Streptomyces sp. SirexAA-E 181 0 1 862751 species species 1 1812480 0 Streptomyces sp. fd1-xmd 413 399 Streptomyces sp. Sge12 0 1 1972846 species Streptomyces sp. 4F 217 0 1751294 1 species 1 1649184 species Streptomyces sp. CFMR 7 258 0 0 Streptomyces sp. CNQ-509 275 species 1 444103 Streptomyces sp. WAC00288 281 0 2094021 1 species species 1 206662 0 542 Streptomyces sp. FR-008 species 1 1561022 0 262 Streptomyces sp. CCM_MD2014 1 1849967 species 471 Streptomyces sp. SAT1 0 0 Streptomyces sp. 769 334 species 1 1262452 species 1837283 1 0 224 Streptomyces sp. S8 species 1 1495638 0 Streptomyces sp. M56 528 225 Streptomyces sp. PAMC 26508 0 1 1265601 species species 1437453 1 0 Streptomyces leeuwenhoekii 211 0 329 Streptomyces violaceusniger species 68280 1 species 1 1969 0 228 Streptomyces chartreusis 0 186 Streptomyces parvulus species 146923 1 0 223 Streptomyces cattleya species 1 29303 0 254 Streptomyces sp. S10(2016) species 1783515 1 species 38300 1 0 229 Streptomyces pristinaespiralis species 1916 1 0 307 Streptomyces lividans 1169025 1 species Streptomyces pratensis 234 0 241 Streptomyces rubrolavendulae 0 1 285473 species 611 Streptomyces pactum 0 1 68249 species 187 Streptomyces cyaneogriseus 0 68192 1 species species 1 1901 0 Streptomyces clavuligerus 310 0 335 Streptomyces glaucescens species 1907 1 1 1950 species 182 Streptomyces peucetius 0 0 Streptomyces puniciscabiei 246 species 164348 1 Streptomyces lincolnensis 458 0 1 1915 species species 1940 1 0 Streptomyces albireticuli 258 0 310 Streptomyces griseochromogenes species 68214 1 0 Streptomyces sp. XZHG99 292 species 2049881 1 species 54571 1 0 Streptomyces venezuelae 728 0 395 Streptomyces malaysiensis species 92644 1 species 1 75293 0 1571 Streptomyces autolyticus Streptomyces lydicus 809 0 1 47763 species 1 68202 species 267 Streptomyces fulvissimus 0 0 Streptomyces alboflavus 315 species 67267 1 362257 1 species Streptomyces vietnamensis 362 0 Streptomyces hygroscopicus 833 0 1 1912 species species 33903 1 0 Streptomyces avermitilis 493 species 1 1355015 0 Streptomyces pluripotens 225 530 Streptomyces formicae 0 1616117 1 species 1 1971 species Streptomyces noursei 354 0 Streptomyces xiamenensis 195 0 408015 1 species species 1 42684 0 Streptomyces collinus 269 species group 629295 2 0 514 252 0 1482558 1 species subgroup 0 252 Streptomyces globisporus species 1 1908 1 1482596 species subgroup 262 0 species 1911 1 0 262 Streptomyces griseus 0 261 Streptomyces violaceoruber species 1 1935 333 Streptomyces xinghaiensis 0 1038928 1 species species 1 1914 0 419 Streptomyces lavendulae 1 52018 no rank 80 0 1 1650658 species 80 Actinobacteria bacterium IMCC26256 0 Candidatus Nanopelagicales 1305 0 10 2039638 12 order 1 1295 0 11 2162846 family genus 1 4 2039639 1 0 Candidatus Nanopelagicus 616 species 1884634 1 0 198 Candidatus Nanopelagicus limnes 0 221 Candidatus Nanopelagicus abundans species 1884916 1 species 1884915 1 0 Candidatus Nanopelagicus hibericus 196 0 8 Candidatus Planktophila 679 genus 1 7 622681 1 1884914 species 119 Candidatus Planktophila dulcis 0 0 124 Candidatus Planktophila lacus species 1 1884913 0 74 Candidatus Planktophila sulfonica species 1884904 1 573600 1 species 128 Candidatus Planktophila limnetica 0 0 Candidatus Planktophila versatilis 118 species 1 1884905 1 1884907 species 108 Candidatus Planktophila vernalis 0 0 10 Propionibacteriales 2512 order 1 29 85009 11 0 Propionibacteriaceae 1228 family 1 16 31957 0 87 genus 1 2801844 87 Pseudopropionibacterium propionicum 0 1 1750 species 29404 1 genus 96 0 0 96 Microlunatus phosphovorus species 1 29405 4 1912216 genus 1 Cutibacterium 207 5 0 70 Cutibacterium avidum 0 33010 1 species species 1 33011 0 Cutibacterium granulosum 46 Cutibacterium acnes 86 0 1747 1 species genus 1 5 72763 4 0 Tessaracoccus 420 species 1332264 1 0 123 Tessaracoccus aquimaris no rank 2635419 1 0 100 0 100 Tessaracoccus sp. T2.5-30 species 1909732 1 0 Tessaracoccus flavescens 106 species 1 399497 species 1 1610493 0 Tessaracoccus flavus 87 genus 1912215 1 0 161 1 1748 species 161 Acidipropionibacterium acidipropionici 0 genus 1 203133 0 46 0 46 no rank 1 2633994 0 Propionimicrobium sp. Marseille-P3275 46 species 1 1871034 2 1743 genus 200 0 168 Propionibacterium freudenreichii 0 1 1744 species 2608905 1 no rank 32 0 0 Propionibacterium sp. oral taxon 193 32 species 671223 1 0 17 Nocardioidaceae 1274 family 1 12 85015 116071 2 1 genus 98 Micropruina 1 0 1 75385 species 97 Micropruina glycogenica 0 2040 2 1 genus 143 Aeromicrobium 0 2 141 Aeromicrobium erythreum 0 1 2041 species 0 13 Nocardioides 561 genus 1 4 1839 no rank 1 2615069 0 178 Nocardioides sp. JS614 178 0 1 196162 species 450734 1 species Nocardioides dokdonensis 208 0 Nocardioides sp. 78 162 0 1 2045452 species 8 0 203 Kribbella 1 genus 182639 2 species 1 182640 0 195 Kribbella flavida 2044 1 genus 252 0 Pimelobacter simplex 252 0 1 2045 species 1643683 3 order 79 0 Acidothermaceae 79 0 3 85032 3 family 1 1 0 Acidothermus 76 genus 1 28048 2 0 Acidothermus cellulolyticus 75 species 1 28049 order 85014 3 0 157 85034 3 1 family 157 Glycomycetaceae 2 0 2 283810 1 genus 155 Stackebrandtia 1 0 species 283811 1 0 154 Stackebrandtia nassauensis Streptosporangiales 1695 4 0 85012 13 order 1 family 1 2004 3 0 1 Streptosporangiaceae 846 genus 1 83681 0 433 0 433 no rank 1 2593643 1 1909395 species 433 Nonomuraea sp. ATCC 55076 0 1 2000 genus 412 0 412 Streptosporangium roseum 0 1 2001 species 83676 6 1 family 677 Nocardiopsaceae 2 0 genus 83677 1 0 70 70 Thermobifida fusca 0 2021 1 species 1 genus 4 2013 2 0 605 Nocardiopsis 0 137 Nocardiopsis alba species 53437 1 1 2014 species 274 Nocardiopsis dassonvillei 0 0 192 Nocardiopsis gilva species 1 280236 168 Thermomonosporaceae 0 5 2012 3 1 family 1 genus 2019 2 0 1 163 Thermomonospora 2020 1 species Thermomonospora curvata 162 0 19 0 Frankiales 1847 order 1 85013 7 74712 6 family 1 Frankiaceae 1828 7 0 1821 Frankia 0 7 1854 5 1 genus Frankia casuarinae 411 0 106370 1 species 1 2632575 no rank 270 0 270 Frankia sp. EAN1pec 0 1 298653 species 1 298654 species Frankia inefficax 224 0 species 1 1859 0 909 Frankia alni 4 414714 1 order 1444 Catenulisporales 4 0 7 0 Catenulisporaceae 1440 family 1 3 414877 2 0 1433 Catenulispora 1 genus 414878 2 304895 1 species 1431 Catenulispora acidiphila 0 25 85004 1 order 1754 Bifidobacteriales 3 0 31953 24 1 family 1751 Bifidobacteriaceae 0 8 19 1678 1 genus 1446 Bifidobacterium 13 0 158787 1 species Bifidobacterium scardovii 106 0 species 1 2 1686 0 28 Bifidobacterium catenulatum 79 Bifidobacterium kashiwanohense 51 0 630129 1 subspecies 0 50 Bifidobacterium angulatum species 1 1683 Bifidobacterium breve 137 0 1685 1 species 1 1691 species Bifidobacterium indicum 37 0 1 638619 species 151 Bifidobacterium actinocoloniiforme 0 1 1684 species Bifidobacterium asteroides 56 0 1680 1 species 40 Bifidobacterium adolescentis 0 species 1689 1 0 Bifidobacterium dentium 63 0 101 Bifidobacterium choerinum species 35760 1 1694 1 species Bifidobacterium pseudolongum 123 0 33905 1 species 57 Bifidobacterium thermophilum 0 species 1 28025 0 Bifidobacterium animalis 59 species 1 1681 0 89 Bifidobacterium bifidum 0 Bifidobacterium pseudocatenulatum 43 species 28026 1 species 1 216816 0 Bifidobacterium longum 213 29 Bifidobacterium coryneforme 0 1687 1 species 2701 2 1 genus 208 Gardnerella 1 0 species 2702 1 0 207 Gardnerella vaginalis genus 1 196081 0 58 0 Scardovia inopinata 58 species 78259 1 31 0 1 196082 genus 0 31 Parascardovia denticolens species 1 78258 class 1 25 84998 0 2 Coriobacteriia 1150 4 0 Eggerthellales 690 order 1 1643822 12 family 1 11 1643826 0 5 Eggerthellaceae 686 0 82 genus 84108 1 0 Slackia heliotrinireducens 82 species 1 84110 genus 1 84162 0 34 0 34 Cryptobacterium curtum species 1 84163 0 107 genus 1981050 1 0 Phoenicibacter massiliensis 107 species 1 1944646 genus 79603 1 0 51 79604 1 species 51 Denitrobacterium detoxificans 0 2 0 187 Gordonibacter 1 genus 644652 3 0 105 Gordonibacter urolithinfaciens species 1 1335613 0 Gordonibacter massiliensis 80 species 1 1841863 2 84111 genus 154 0 species 84112 1 0 118 Eggerthella lenta 36 0 1 2648737 no rank Eggerthella sp. YY7918 36 0 1 502558 species 447020 1 genus 66 0 66 Adlercreutzia equolifaciens 0 446660 1 species Coriobacteriales 458 5 0 12 84999 order 1 314 0 6 1643824 family 68 0 1 2767353 genus 1 1382 species Atopobium parvulum 68 0 4 133925 1 genus 245 Olsenella 0 3 1 1805478 species 69 Olsenella sp. Marseille-P2300 0 0 36 Olsenella uli species 1 133926 no rank 1 2638792 0 137 712411 1 species 137 Olsenella sp. oral taxon 807 0 0 1 Atopobium genus 1380 1 1 family 84107 5 2 0 139 Coriobacteriaceae 0 50 no rank 1 84113 0 Coriobacteriaceae bacterium 68-1-3 50 species 1531429 1 33870 2 genus 1 Coriobacterium 43 2 0 1 33871 species Coriobacterium glomerans 41 0 genus 102106 1 0 44 species 74426 1 0 44 Collinsella aerofaciens 223 Rubrobacteria 0 7 84995 5 1 class 0 1 216 Rubrobacterales 1 order 4 84996 0 215 family 84997 3 1 genus 42255 3 0 1 215 Rubrobacter 0 Rubrobacter radiotolerans 110 species 1 42256 0 Rubrobacter xylanophilus 104 species 49319 1 0 311 no rank 1752188 4 65 Actinobacteria bacterium IMCC25003 0 1848255 1 species species 1 1848755 0 Actinobacteria bacterium IMCC26077 47 species 1 1848756 0 92 Actinobacteria bacterium IMCC26103 0 107 Actinobacteria bacterium IMCC19121 species 1848754 1 349 0 5 84992 class 0 1 349 Acidimicrobiales 1 order 84993 5 Acidimicrobiaceae 106 0 1 84994 3 family 1 1 0 Acidimicrobium 105 genus 1 2 53634 0 Acidimicrobium ferrooxidans 104 species 53635 1 0 242 family 1 2448023 682522 1 genus 242 0 Ilumatobacter coccineus 242 0 467094 1 species 44 0 141603 Firmicutes 1 phylum 1239 660 class 1 13 1737404 8 0 Tissierellia 1779 order 1 10 1737405 0 3 Tissierellales 1578 1570339 8 1 family 1136 Peptoniphilaceae 3 0 300 0 2 165779 genus Anaerococcus prevotii 154 0 1 33034 species 146 Anaerococcus mediterraneensis 0 1870984 1 species 0 374 genus 1 543311 33033 1 species 374 Parvimonas micra 0 0 83 genus 1 1161127 1 1852373 species 83 Murdochiella vaginalis 0 0 234 genus 150022 1 1260 1 species 234 Finegoldia magna 0 genus 1 2 162289 0 2 Peptoniphilus 142 0 140 no rank 2637196 1 Peptoniphilus sp. ING2-D1G 140 0 1912856 1 species 1 2042895 family 439 0 genus 1505664 1 0 439 species 1 1556 0 Gottschalkia acidurici 439 0 193 no rank 1737407 2 193 Ezakiella 0 1 2 1582879 1 genus 1 1852374 species 192 Ezakiella massiliensis 0 class 1 1676648 4 0 1 Limnochordia 105 0 1 Limnochordales 104 order 1 3 1676649 103 0 2 1676650 family 1 genus 2 1676651 1 0 103 Limnochorda 102 Limnochorda pilosa 0 1 1555112 species 26 909932 1 class 1924 Negativicutes 0 5 126 0 4 1843488 order 1 family 4 909930 6 0 126 Acidaminococcaceae 120 Acidaminococcus 0 1 3 904 1 genus species 905 1 0 Acidaminococcus fermentans 80 39 Acidaminococcus intestini 0 187327 1 species 909929 13 1 order 1251 Selenomonadales 0 10 1 0 721 Sporomusaceae 1 family 4 1843490 0 1 720 Pelosinus 1 genus 365348 3 species 1 365349 0 Pelosinus fermentans 335 0 384 no rank 1 2629460 0 384 Pelosinus sp. UFO1 species 1 484770 520 Selenomonadaceae 1 0 1843491 8 1 family 970 6 1 genus 269 Selenomonas 13 0 63 Selenomonas ruminantium 0 1 971 species 0 138 no rank 2637378 3 52 Selenomonas sp. oral taxon 478 0 1 712538 species species 1 713030 0 53 Selenomonas sp. oral taxon 136 Selenomonas sp. oral taxon 920 33 0 1884263 1 species species 69823 1 0 55 Selenomonas sputigena 250 0 1 158846 genus 0 250 Megamonas hypermegale species 1 158847 order 1 8 1843489 0 1 Veillonellales 542 family 31977 7 0 541 Veillonella 238 0 3 3 29465 genus 1 Veillonella parvula 175 0 1 29466 species species 1 248315 0 Veillonella rodentium 60 1 0 Dialister 132 genus 1 39948 2 39950 1 species Dialister pneumosintes 131 0 0 44 genus 1 909928 Negativicoccus massiliensis 44 0 1702287 1 species 127 0 1 906 genus 0 Megasphaera elsdenii 127 species 1 907 no rank 1 84086 0 388 388 endosymbiont 'TC1' of Trimyema compressum 0 1 243899 species Clostridia 50444 49 0 186801 191 class 1 2770089 2 order 261 0 0 199 family 2770092 1 1 499228 genus 199 0 species 499229 1 0 199 Tepidanaerobacter acetatoxydans 2770093 1 family 62 0 0 62 genus 291988 1 species 1 291990 0 62 Thermosediminibacter oceani 4 0 1965 Halanaerobiales 1 order 11 53433 family 1 972 6 0 3 Halanaerobiaceae 1263 2330 3 1 genus 1059 Halanaerobium 0 4 2331 1 species Halanaerobium praevalens 593 0 656519 1 species 462 Halanaerobium hydrogeniformans 0 2 32636 genus 1 Halothermothrix 201 8 0 1 31909 species Halothermothrix orenii 193 0 3 0 698 Halobacteroidaceae 1 family 53434 4 28186 1 genus 256 0 0 Acetohalobium arabaticum 256 species 1 28187 Halobacteroides 439 2 0 2 42417 genus 1 Halobacteroides halobius 437 0 1 42422 species order 1 4 485256 2 0 Natranaerobiales 254 3 485255 1 family 252 Natranaerobiaceae 1 0 Natranaerobius 251 2 0 2 375928 genus 1 1 375929 species Natranaerobius thermophilus 249 0 Thermoanaerobacterales 5255 0 9 32 68295 order 1 2 543372 1 family 85 Thermoanaerobacterales Family IV. Incertae Sedis 1 0 genus 1 252965 0 84 252966 1 species Mahella australiensis 84 0 1 227387 family 222 0 1 227388 genus 222 0 1 184064 species Thermodesulfobium narugense 222 0 2359 0 543371 12 family genus 1 28895 3 3 0 Thermoanaerobacterium 649 species 1 29329 0 Thermoanaerobacterium xylanolyticum 216 1 1517 species Thermoanaerobacterium thermosaccharolyticum 430 0 25 0 Caldicellulosiruptor 1710 genus 1 44000 9 31899 1 species Caldicellulosiruptor bescii 250 0 413888 1 species Caldicellulosiruptor hydrothermalis 204 0 species 1 413889 0 Caldicellulosiruptor kronotskyensis 244 0 206 Caldicellulosiruptor obsidiansis species 717609 1 0 182 Caldicellulosiruptor kristjanssonii species 52765 1 0 215 Caldicellulosiruptor owensensis species 1 55205 species 1 52766 0 190 Caldicellulosiruptor lactoaceticus 0 194 Caldicellulosiruptor saccharolyticus species 44001 1 2580 Thermoanaerobacteraceae 3 0 186814 16 1 family 129957 1 genus 107 0 species 1 129958 0 Carboxydothermus hydrogenoformans 107 genus 1 1754 9 106 0 Thermoanaerobacter 2076 species 108150 1 0 250 Thermoanaerobacter italicus 242 Thermoanaerobacter pseudethanolicus 0 496866 1 species 1 2325 species Thermoanaerobacter kivui 238 0 no rank 2636821 2 0 542 Thermoanaerobacter sp. X513 289 0 573062 1 species species 399726 1 0 Thermoanaerobacter sp. X514 253 237 Thermoanaerobacter mathranii 0 1 583357 species 0 219 Thermoanaerobacter wiegelii species 1 46354 0 242 Thermoanaerobacter brockii species 29323 1 249529 1 genus 227 0 Caldanaerobacter subterraneus 227 0 1 911092 species no rank 3 42857 0 114 32 0 42837 1 genus 32 Ammonifex degensii 0 42838 1 species Moorella 82 0 1 44260 2 genus 1 0 81 Moorella thermoacetica species 1 1525 0 53 genus 1 140458 0 53 Thermacetogenium phaeum species 85874 1 141 186802 order 1 Clostridiales 42660 0 97 68298 3 family 1 Syntrophomonadaceae 248 0 1 genus 862 1 0 185 species 863 1 0 Syntrophomonas wolfei 185 genus 1 129001 0 62 Syntrophothermus lipocalidus 62 0 86170 1 species Peptostreptococcaceae 2751 0 2 9 186804 family 1 0 4 Clostridioides 1278 genus 1 2 1870884 1496 1 species 1274 Clostridioides difficile 0 2 0 674 Paeniclostridium 1 genus 2 1849828 species 1 1505 0 Paeniclostridium sordellii 672 254 0 1 1411023 no rank 254 Peptostreptococcaceae bacterium oral taxon 929 0 2081703 1 species 300 0 1 186831 genus Acetoanaerobium sticklandii 300 0 1 1511 species 1 44259 genus 164 0 143361 1 species 164 Filifactor alocis 0 0 79 genus 1 1481960 species 1 1731 0 79 Peptoclostridium acidaminophilum 1 216572 family 89 0 89 0 459786 1 genus species 351091 1 0 Oscillibacter valericigenes 89 0 1518 family 2304686 10 genus 1 236752 0 205 0 205 Fastidiosipila sanguinis species 1 236753 0 67 no rank 1 2305130 species 1 1834198 0 Ruminiclostridium sp. KB18 67 1 1637257 genus 78 0 0 Mageeibacillus indolicus 78 species 884684 1 genus 1 2 1508657 3 0 Ruminiclostridium 228 species 1 1521 0 225 [Clostridium] cellulolyticum genus 2304693 1 0 162 162 [Clostridium] thermosuccinogenes 0 84032 1 species 99 0 2304691 1 genus 99 [Clostridium] stercorarium 0 1510 1 species 679 0 2304692 3 genus [Clostridium] clariflavum 210 0 288965 1 species 0 Ruminiclostridium thermocellum 189 species 1515 1 280 Herbivorax saccincola 0 1677857 1 species family 3 186806 0 525 1730 2 genus 1 Eubacterium 291 0 4 species 1736 1 0 287 Eubacterium limosum 0 234 genus 1 33951 species 1 33952 0 234 Acetobacterium woodii 0 2 Heliobacteriaceae 65 family 1 31984 2 63 0 1 2697 genus 63 Heliobacterium modesticaldum 0 35701 1 species 68 0 990719 2 family 2 990721 genus 1 Christensenella 68 2 0 1805714 1 species 66 Christensenella massiliensis 0 40 31979 family 1 Clostridiaceae 29236 15 0 Alkaliphilus 690 0 2 3 114627 genus 1 425 Alkaliphilus metalliredigens 0 208226 1 species 461876 1 species 263 Alkaliphilus oremlandii 0 253 Geosporobacter 1 0 390805 2 1 genus Geosporobacter ferrireducens 252 0 1424294 1 species genus 1 49082 4 0 10 Candidatus Arthromitus 1048 no rank 2638829 3 0 1038 323 Candidatus Arthromitus sp. SFB-mouse-NL 0 1 1508644 species Candidatus Arthromitus sp. SFB-mouse 321 0 49118 1 species species 1 1041504 0 394 Candidatus Arthromitus sp. SFB-rat-Yit Clostridium 27230 0 131 1485 30 genus 1 species 29341 1 0 Clostridium argentinense 698 0 Clostridium scatologenes 851 species 1 1548 species 394958 1 0 Clostridium taeniosporum 673 0 616 Clostridium bornimense species 1 1216932 669 Clostridium cellulovorans 0 1 1493 species 46867 1 species 625 Clostridium chauvoei 0 species 1 84023 0 Clostridium autoethanogenum 530 species 1 217159 0 Clostridium carboxidivorans 705 0 Clostridium beijerinckii 1458 species 1520 1 species 169679 1 0 1422 Clostridium saccharobutylicum 1 1494 species Clostridium cochlearium 590 0 1501 1 species 1233 Clostridium pasteurianum 0 species 1 238834 0 Clostridium estertheticum 616 1502 1 species 1208 Clostridium perfringens 0 species 1 1534 0 Clostridium kluyveri 723 0 654 Clostridium sporogenes species 1509 1 0 537 Clostridium novyi species 1542 1 no rank 2614128 2 0 275 0 Clostridium sp. SY8519 49 species 1042156 1 755731 1 species Clostridium sp. BNL1100 226 0 0 6695 Clostridium botulinum species 1491 1 0 1016 Clostridium butyricum species 1 1492 750 Clostridium tetani 0 1513 1 species 0 399 Clostridium aceticum species 84022 1 0 1150 Clostridium saccharoperbutylacetonicum species 1 36745 1 1538 species Clostridium ljungdahlii 542 0 1488 1 species 553 Clostridium acetobutylicum 0 1519 1 species Clostridium tyrobutyricum 417 0 0 Clostridium baratii 1125 species 1 1561 0 Clostridium formicaceticum 369 species 1 1497 no rank 6 538999 0 522 103 0 2 539000 family 1 genus 73918 2 1 0 103 Thermaerobacter 1 73919 species 102 Thermaerobacter marianensis 0 2717089 1 genus 92 0 species 2086584 1 0 Mordavella sp. Marseille-P3756 92 0 98 genus 1392389 1 0 Intestinimonas butyriciproducens 98 species 1 1297617 229 0 2 543314 family species 1 143393 0 [Eubacterium] sulci 91 86331 1 genus 138 0 species 114527 1 0 Mogibacterium diversum 138 Peptococcaceae 2764 0 5 28 186807 family 1 1 genus 79206 4 1 0 611 Desulfosporosinus 1 79209 species Desulfosporosinus meridiei 155 0 216 Desulfosporosinus orientis 0 1563 1 species 239 Desulfosporosinus acidiphilus 0 1 885581 species 3 0 560 Desulfitobacterium 1 genus 36853 5 1 142877 species Desulfitobacterium metallireducens 143 0 species 49338 1 0 161 Desulfitobacterium hafniense 1 233055 species 100 Desulfitobacterium dichloroeliminans 0 species 1 36854 0 Desulfitobacterium dehalogenans 153 0 1 138 Thermincola 1 genus 2 278993 Thermincola potens 137 0 863643 1 species 116 0 1 51196 genus 116 Syntrophobotulus glycolicus 0 1 51197 species Desulfotomaculum 482 0 6 5 1562 genus 1 species 1564 1 0 95 Desulfotomaculum ruminis 0 Desulfotomaculum nigrificans 89 species 1565 1 species 1 59610 0 Desulfotomaculum reducens 198 0 Desulfotomaculum ferrireducens 94 species 1 1833852 1 genus 471826 2 0 3 65 Candidatus Desulforudis 62 Candidatus Desulforudis audaxviator 0 471827 1 species 1 genus 51514 2 0 3 180 Dehalobacterium 0 Dehalobacterium formicoaceticum 177 species 51515 1 1 2282740 genus 168 0 species 1 102134 0 168 Desulfotomaculum gibsoniae 0 6 286 Dehalobacter 1 genus 56112 4 85 Dehalobacter restrictus 0 1 55583 species 0 195 no rank 2 2635733 0 95 Dehalobacter sp. DCA species 1147129 1 0 100 Dehalobacter sp. CF species 1 1131462 2282742 1 genus 153 0 species 58138 1 0 153 Desulfotomaculum acetoxidans 5 0 4083 Lachnospiraceae 1 family 24 186803 genus 28050 1 0 287 287 [Eubacterium] eligens 0 1 39485 species 2 698776 genus 1 Cellulosilyticum 933 1 0 0 Cellulosilyticum lentocellum 932 species 29360 1 genus 841 1 0 54 0 Roseburia hominis 54 species 301301 1 0 2 Anaerostipes 215 genus 1 2 207244 0 213 Anaerostipes hadrus species 649756 1 1 2719231 genus 151 0 0 [Clostridium] saccharolyticum 151 species 1 84030 1 0 248 Blautia 1 genus 572511 3 no rank 1 2648079 0 102 species 1 1796616 0 102 Blautia sp. YL58 1 1322 species Blautia hansenii 145 0 genus 1 2039240 0 142 0 142 Anaerotignum propionicum species 1 28446 genus 2719313 1 0 144 0 144 [Clostridium] bolteae species 208479 1 172 0 1663717 1 genus 0 Herbinix luporum 172 species 1 1679721 4 0 401 Lachnoclostridium 1 genus 4 1506553 0 109 no rank 2608895 1 1834196 1 species 109 Lachnoclostridium sp. YL32 0 1 66219 species 232 Lachnoclostridium phytofermentans 0 56 Lachnoclostridium phocaeense 0 1871021 1 species 1 genus 3 830 0 1 602 Butyrivibrio 0 Butyrivibrio hungatei 313 species 1 185008 0 Butyrivibrio proteoclasticus 288 species 1 43305 no rank 186928 2 0 203 [Eubacterium] rectale 115 0 39491 1 species Lachnospiraceae bacterium oral taxon 500 88 0 712991 1 species 526 0 1 2569097 genus [Eubacterium] hallii 526 0 39488 1 species family 2 543349 0 107 107 Symbiobacterium 1 0 2733 2 1 genus 106 Symbiobacterium thermophilum 0 2734 1 species family 1 541000 10 2 0 Ruminococcaceae 587 552397 1 no rank 70 0 1 29343 species [Clostridium] cellulosi 70 0 104 0 1 216851 genus Faecalibacterium prausnitzii 104 0 1 853 species no rank 2305133 1 0 52 Ruminococcaceae bacterium CPB6 52 0 1 1572656 species genus 1263 2 0 175 1160721 1 species 78 Ruminococcus bicirculans 0 species 1 1264 0 97 Ruminococcus albus 1 genus 2 946234 0 2 96 Flavonifractor Flavonifractor plautii 94 0 1 292800 species 1 253238 genus 86 0 1 253239 species Ethanoligenens harbinense 86 0 0 2 Herbivorax genus 1890281 1 75 0 Bacilli 86248 class 1 414 91061 order 1 160 186826 57 0 Lactobacillales 25110 182 0 1 263855 no rank 182 Lactobacillales bacterium 0 1993866 1 species Lactobacillaceae 9105 0 13 33958 58 family 1 2767877 1 genus 161 0 species 1 148814 0 161 Lactobacillus kunkeei 3 0 764 Pediococcus 1 genus 1253 6 species 187452 1 0 Pediococcus claussenii 144 232 Pediococcus pentosaceus 0 1 1255 species Pediococcus damnosus 164 0 51663 1 species 105 0 1670797 1 species group Pediococcus acidilactici 105 0 1 1254 species 0 Pediococcus inopinatus 116 species 114090 1 3 2767842 genus 777 0 Lactobacillus plantarum 611 0 1 1590 species 0 Lactobacillus paraplantarum 78 species 1 60520 0 88 Lactobacillus pentosus species 1 1589 2767885 2 genus 330 0 107 Lactobacillus curvatus 0 28038 1 species 0 223 Lactobacillus sakei species 1599 1 genus 2767893 3 0 274 Lactobacillus parabuchneri 66 0 152331 1 species species 1 1581 0 Lactobacillus buchneri 98 species 1 1138822 0 Lactobacillus curieae 110 genus 4 2767887 0 885 Lactobacillus salivarius 650 0 1624 1 species 1 1623 species Lactobacillus ruminis 72 0 Lactobacillus agilis 78 0 1601 1 species species 89059 1 0 85 Lactobacillus acidipiscis 0 263 genus 2 2767889 375175 1 species 174 Lactobacillus backii 0 0 Lactobacillus coryniformis 89 species 1610 1 548 0 2742598 3 genus 0 Lactobacillus reuteri 306 species 1 1598 1613 1 species Lactobacillus fermentum 139 0 species 1 97478 0 Lactobacillus mucosae 103 genus 2767886 3 0 193 1 267363 species Lactobacillus zymae 29 0 637971 1 species Lactobacillus koreensis 36 0 1580 1 species Lactobacillus brevis 128 0 0 949 genus 6 2767879 species 1602 1 0 Lactobacillus alimentarius 149 1 1612 species 142 Lactobacillus farciminis 0 1 1847728 species Lactobacillus allii 176 0 species 1007676 1 0 205 Lactobacillus ginsenosidimutans 1074467 1 species Lactobacillus heilongjiangensis 116 0 0 Lactobacillus crustorum 161 species 1 392416 2767881 2 genus 310 0 Lactobacillus sanfranciscensis 119 0 1 1625 species 191 Lactobacillus lindneri 0 1 53444 species 2759736 3 genus 494 0 0 162 Lactobacillus rhamnosus species 1 47715 species 1597 1 0 Lactobacillus paracasei 149 0 Lactobacillus casei 183 species 1582 1 2767892 1 genus 120 0 0 Lactobacillus paracollinoides 120 species 240427 1 140 0 2767890 1 genus 0 Lactobacillus hokkaidonensis 140 species 1 1193095 genus 1 2767876 0 59 1 1603 species 59 Lactobacillus amylophilus 0 0 66 2825 Lactobacillus 1 genus 16 1578 1 1600 species 136 Lactobacillus acetotolerans 0 0 Lactobacillus helveticus 342 species 1 1587 1596 1 species 283 Lactobacillus gasseri 0 0 151 Lactobacillus acidophilus species 1 1579 0 116 Lactobacillus kefiranofaciens species 267818 1 species 1 33959 0 Lactobacillus johnsonii 352 4 2620435 no rank 487 0 1 1545702 species Lactobacillus sp. wkB8 147 0 Lactobacillus sp. CBA3606 63 0 1 2099789 species 198 Lactobacillus sp. CBA3605 0 1 2099788 species 0 79 Lactobacillus sp. D1501 species 2108362 1 375 Lactobacillus delbrueckii 0 1584 1 species Lactobacillus amylolyticus 92 0 83683 1 species 0 155 Lactobacillus amylovorus species 1604 1 109790 1 species 141 Lactobacillus jensenii 0 species 52242 1 0 129 Lactobacillus gallinarum 49 1300 1 family 8200 Streptococcaceae 9 0 0 61 6362 Streptococcus 1 genus 43 1301 Streptococcus uberis 119 0 1 1349 species 0 Streptococcus oralis 169 species 1 1303 1 1346 species 121 Streptococcus iniae 0 species 1 257758 0 Streptococcus pseudopneumoniae 79 Streptococcus pasteurianus 96 0 197614 1 species 0 82 Streptococcus himalayensis species 1888195 1 species 1 150055 0 130 Streptococcus lutetiensis Streptococcus mutans 202 0 1309 1 species 315405 1 species Streptococcus gallolyticus 238 0 1304 1 species 253 Streptococcus salivarius 0 328 0 2 119603 species group 108 Streptococcus dysgalactiae 0 1 1334 species species 1336 1 0 Streptococcus equi 220 0 Streptococcus marmotae 62 species 1 1825069 species 1 1314 0 Streptococcus pyogenes 370 1307 1 species Streptococcus suis 453 0 0 100 Streptococcus parasanguinis species 1 1318 0 494 species group 671232 3 1 1338 species 195 Streptococcus intermedius 0 227 Streptococcus anginosus 0 1328 1 species species 1 76860 0 72 Streptococcus constellatus 0 Streptococcus pluranimalium 94 species 1 82348 1 1313 species Streptococcus pneumoniae 313 0 Streptococcus acidominimus 97 0 1326 1 species 45634 1 species 54 Streptococcus cristatus 0 1 1305 species 55 Streptococcus sanguinis 0 0 Streptococcus equinus 81 species 1335 1 90 Streptococcus pantholopis 0 1811193 1 species 0 Streptococcus halotolerans 78 species 1 1814128 0 592 no rank 7 2608887 0 Streptococcus sp. NPS 308 71 species 1 1902136 0 Streptococcus sp. A12 66 species 1 1759399 0 84 Streptococcus sp. oral taxon 431 species 712633 1 1 1156433 species Streptococcus sp. I-P16 57 0 0 86 Streptococcus sp. FDAARGOS_192 species 1839799 1 0 Streptococcus sp. I-G2 62 species 1156431 1 1 1319 species 166 Streptococcus sp. 'group B' 0 1348 1 species 149 Streptococcus parauberis 0 232 Streptococcus mitis 0 1 28037 species 1 400065 species 64 Streptococcus merionis 0 species 1 59310 0 Streptococcus macedonicus 110 species 1308 1 0 Streptococcus thermophilus 191 0 Streptococcus infantarius 188 species 102684 1 species 1311 1 0 Streptococcus agalactiae 350 0 Streptococcus gordonii 267 species 1302 1 genus 1 1357 5 0 2 Lactococcus 1829 species 1 1363 0 221 Lactococcus garvieae 1 1364 species 261 Lactococcus piscium 0 0 74 Lactococcus raffinolactis species 1366 1 species 1 1358 0 Lactococcus lactis 1271 1915 Carnobacteriaceae 0 7 10 186828 1 family 0 5 1076 Carnobacterium 1 genus 2747 5 506 Carnobacterium maltaromaticum 0 2751 1 species no rank 257487 2 0 342 123 Carnobacterium sp. CP1 0 1 1564681 species species 208596 1 0 Carnobacterium sp. 17-4 219 species 1 147709 0 Carnobacterium inhibens 223 1 191769 genus 515 0 515 0 2632303 1 no rank 0 Marinilactibacillus sp. 15R 515 species 1 1911586 317 Jeotgalibaca 0 2 3 1470540 1 genus no rank 1 2621505 0 178 Jeotgalibaca sp. PTS2502 178 0 1 1903686 species Jeotgalibaca dankookensis 137 0 1 708126 species 0 593 family 186827 7 4 0 593 Aerococcus 1 genus 1375 7 70 Aerococcus urinaehominis 0 1 128944 species Aerococcus sanguinicola 54 0 119206 1 species 1 87541 species 122 Aerococcus christensenii 0 130 Aerococcus urinae 0 1 1376 species species 1 51665 0 121 Aerococcus urinaeequi species 1 1377 0 92 Aerococcus viridans 0 4 3220 Enterococcaceae 1 family 19 81852 1350 12 1 genus 2251 Enterococcus 0 15 1 37734 species 105 Enterococcus casseliflavus 0 no rank 2608891 3 0 350 2060306 1 species 119 Enterococcus sp. FDAARGOS_163 0 Enterococcus sp. FDAARGOS_375 124 0 2060307 1 species 2057791 1 species Enterococcus sp. CR-Ec1 107 0 417368 1 species Enterococcus thailandicus 224 0 species 1352 1 0 364 Enterococcus faecium 1 53346 species Enterococcus mundtii 211 0 1351 1 species 371 Enterococcus faecalis 0 0 231 Enterococcus hirae species 1 1354 172 Enterococcus wangshanyuanii 0 1 2005703 species species 53345 1 0 Enterococcus durans 208 51668 2 1 genus 299 Tetragenococcus 0 5 0 Tetragenococcus halophilus 294 species 1 51669 3 0 Vagococcus 399 genus 1 2737 3 species 1 519472 0 197 Vagococcus teuberi 1 633807 species 199 Vagococcus penaei 0 genus 33969 1 0 267 267 Melissococcus plutonius 0 1 33970 species family 15 81850 0 1838 Leuconostoc 1178 9 0 1243 9 genus 1 166 Leuconostoc carnosum 0 1 1252 species species 1 1245 0 Leuconostoc mesenteroides 311 116 Leuconostoc kimchii 0 136609 1 species Leuconostoc lactis 64 0 1 1246 species 255248 1 species 51 Leuconostoc garlicum 0 94 0 2685106 1 no rank species 1 979982 0 Leuconostoc sp. C2 94 91 Leuconostoc citreum 0 33964 1 species 1 1244 species Leuconostoc gelidum 276 0 genus 1 46254 0 110 110 Oenococcus oeni 0 1247 1 species 0 550 genus 5 46255 species 1 759620 0 62 Weissella ceti 0 Weissella koreensis 146 species 1 165096 species 1 1631871 0 147 Weissella jogaejeotgali 0 Weissella cibaria 74 species 137591 1 0 Weissella paramesenteroides 121 species 1 1249 133 0 Bacillales 61063 order 1 253 1385 0 23 10768 Staphylococcaceae 1 family 40 90964 2005363 1 genus 188 0 species 1849491 1 0 Auricoccus indicus 188 0 2 Macrococcus 540 genus 1 69965 4 no rank 2619255 1 0 225 225 Macrococcus sp. IME1552 0 1898474 1 species 148 Macrococcus canis 0 1 1855823 species 1 69966 species 165 Macrococcus caseolyticus 0 1 genus 1279 33 0 93 9954 Staphylococcus 1 1288 species Staphylococcus xylosus 515 0 0 181 Staphylococcus simulans species 1286 1 0 247 Staphylococcus capitis species 29388 1 species 46127 1 0 229 Staphylococcus felis Staphylococcus pettenkoferi 119 0 170573 1 species 115 Staphylococcus muscae 0 1 1294 species Staphylococcus lutrae 170 0 1 155085 species 0 1067 Staphylococcus aureus species 1280 1 species 29385 1 0 Staphylococcus saprophyticus 317 species 1 985002 0 Staphylococcus argenteus 314 1 246432 species 412 Staphylococcus equorum 0 0 357 Staphylococcus hominis species 1290 1 no rank 91994 1 0 303 species 1 1715860 0 303 Staphylococcus sp. AntiMn-1 1 1292 species 265 Staphylococcus warneri 0 species 643214 1 0 Staphylococcus stepanovicii 269 317 Staphylococcus haemolyticus 0 1 1283 species species 1 1284 0 171 Staphylococcus hyicus 239 Staphylococcus schleiferi 0 1 1295 species Staphylococcus sciuri 291 0 1 1296 species 0 Staphylococcus succinus 263 species 61015 1 Staphylococcus simiae 320 0 308354 1 species 737 Staphylococcus pasteuri 0 1 45972 species 0 241 Staphylococcus lugdunensis species 1 28035 species 1 214473 0 260 Staphylococcus nepalensis species 1 70255 0 213 Staphylococcus condimenti 0 Staphylococcus pseudintermedius 209 species 1 283734 1 1281 species 223 Staphylococcus carnosus 0 1 1282 species Staphylococcus epidermidis 631 0 species 1 70258 0 Staphylococcus piscifermentans 161 226 Staphylococcus agnetis 0 985762 1 species species 29384 1 0 Staphylococcus kloosii 226 species 1 29382 0 Staphylococcus cohnii 253 63 0 45669 1 genus 0 63 Salinicoccus halodurans species 1 407035 2 186824 family 60 0 genus 1 1677050 2 0 2 Novibacillus 60 1471761 1 species 58 Novibacillus thermophilus 0 539002 8 no rank 649 0 539742 7 no rank 457 0 Exiguobacterium 457 3 0 7 33986 genus 1 species 1 132920 0 Exiguobacterium antarcticum 73 species 1 332410 0 74 Exiguobacterium sibiricum 0 307 no rank 2644629 4 101 Exiguobacterium sp. U13-1 0 1849031 1 species 1224749 1 species 104 Exiguobacterium sp. ZWU0009 0 0 Exiguobacterium sp. MH3 52 species 1 1399115 0 50 Exiguobacterium sp. AT1b species 1 360911 539738 1 no rank 192 0 192 0 1378 1 genus 192 0 2624949 1 no rank 1 1785995 species 192 Gemella sp. oral taxon 928 0 0 3 4025 Planococcaceae 1 family 186818 26 6 0 1101 Sporosarcina 1 genus 1569 5 species 1571 1 0 547 Sporosarcina ureae 1 1476 species 384 Sporosarcina psychrophila 0 164 0 2 2647733 no rank Sporosarcina sp. P33 78 0 1 1930764 species Sporosarcina sp. P37 86 0 1 1930546 species 3 648800 genus 1 Solibacillus 557 3 0 2637870 1 no rank 271 0 1 2048654 species Solibacillus sp. R5-41 271 0 species 1 76853 0 283 Solibacillus silvestris 0 2 Jeotgalibacillus 203 genus 1 157226 2 species 1508404 1 0 Jeotgalibacillus malaysiensis 201 Planococcus 1742 0 3 1372 12 genus 1 2 2662419 no rank 270 0 species 2058136 1 0 68 Planococcus sp. MB-3u-03 1 1526927 species 202 Planococcus sp. PAMC 21323 0 Planococcus maritimus 173 0 1 192421 species 0 188 Planococcus sp. L10.15 species 1302659 1 Planococcus faecalis 225 0 1598147 1 species Planococcus plakortidis 52 0 1038856 1 species species 1215089 1 0 263 Planococcus halocryophilus Planococcus antarcticus 113 0 161360 1 species 0 Planococcus donghaensis 178 species 414778 1 1 1374 species 190 Planococcus kocurii 0 200991 1 species Planococcus rifietoensis 87 0 0 2 Rummeliibacillus 192 genus 1 2 648802 1 241244 species 190 Rummeliibacillus stabekisii 0 0 227 genus 1649 1 0 227 no rank 2644826 1 1750719 1 species Kurthia sp. 11kri321 227 0 Sporolactobacillaceae 118 0 1 2 186821 family 1 117 0 1 663587 no rank 0 117 [Bacillus] selenitireducens species 85683 1 1 family 186822 45 13 0 10468 Paenibacillaceae 210 0 3 85151 no rank 3 55079 genus 1 Aneurinibacillus 210 2 0 no rank 2642329 1 0 102 1450761 1 species Aneurinibacillus sp. XH2 102 0 species 1500254 1 0 106 Aneurinibacillus soli genus 1 44249 36 49 0 Paenibacillus 9317 251 Paenibacillus peoriae 0 59893 1 species 56 Paenibacillus sabinae 0 365617 1 species species 172713 1 0 120 Paenibacillus kribbensis 0 98 Paenibacillus yonginensis species 1462996 1 0 212 Paenibacillus crassostreae species 1763538 1 species 1126833 1 0 Paenibacillus beijingensis 137 species 159743 1 0 Paenibacillus terrae 112 171 Paenibacillus borealis 0 1 160799 species 140 Paenibacillus xylanexedens 0 1 528191 species 0 Paenibacillus durus 265 species 1 44251 no rank 185978 13 0 3522 106 Paenibacillus sp. 32O-W 0 1695218 1 species species 1536771 1 0 130 Paenibacillus sp. FSL R5-0912 1870819 1 species 221 Paenibacillus sp. BIHB4019 0 140 Paenibacillus sp. FSL R7-0331 0 1536773 1 species Paenibacillus sp. FSL R5-0345 510 0 1536770 1 species Paenibacillus sp. IHBB 10380 1143 0 1566358 1 species 0 99 Paenibacillus sp. JDR-2 species 324057 1 Paenibacillus sp. FSL P4-0081 396 0 1 1536769 species 0 Paenibacillus sp. lzh-N1 120 species 2069255 1 Paenibacillus sp. Y412MC10 93 0 1 481743 species 1536775 1 species Paenibacillus sp. FSL H7-0737 202 0 0 Paenibacillus sp. FSL R7-0273 138 species 1 1536772 0 224 Paenibacillus sp. FSL H7-0357 species 1536774 1 species 162209 1 0 85 Paenibacillus naphthalenovorans 0 123 Paenibacillus swuensis species 1 1178515 0 188 species group 1 2044880 188 Paenibacillus riograndensis 0 1 483937 species species 1 1870820 0 125 Paenibacillus ihbetae 0 251 Paenibacillus graminis species 189425 1 Paenibacillus odorifer 269 0 1 189426 species 0 Paenibacillus stellifer 56 species 169760 1 0 307 Paenibacillus mucilaginosus species 61624 1 1464 1 species 246 Paenibacillus larvae 0 1352 Paenibacillus polymyxa 0 1 1406 species Paenibacillus bovis 348 0 1616788 1 species 1 414771 species 834 Paenibacillus donghaensis 0 115 0 76632 1 genus Thermobacillus composti 115 0 377615 1 species 55080 4 genus 1 Brevibacillus 813 1 0 399 Brevibacillus laterosporus 0 1465 1 species 0 Brevibacillus brevis 257 species 1393 1 1 54913 species Brevibacillus formosus 156 0 Listeriaceae 1854 0 6 186820 9 family 1 Brochothrix 247 3 0 2755 2 genus 1 0 Brochothrix thermosphacta 244 species 1 2756 Listeria 1601 17 0 6 1637 genus 1 species 1 1642 0 213 Listeria innocua species 1 1643 0 216 Listeria welshimeri species 1638 1 0 Listeria ivanovii 345 Listeria monocytogenes 661 0 1639 1 species 1640 1 species 149 Listeria seeligeri 0 family 1 186817 112 50 0 Bacillaceae 32512 533 0 2 2675230 genus species 1 859143 0 Bacillus kochii 312 species 1 665099 0 Bacillus oceanisediminis 221 5 2675234 genus 1138 0 0 Bacillus krulwichiae 382 species 199441 1 species 1 79880 0 Bacillus clausii 191 0 118 Bacillus halodurans species 86665 1 Bacillus pseudofirmus 204 0 79885 1 species 243 Bacillus lehensis 0 300825 1 species genus 1 175304 0 120 Lentibacillus amyloliquefaciens 120 0 1 1472767 species 0 280 genus 2 45667 1 402384 species 135 Halobacillus mangrovi 0 1570 1 species 145 Halobacillus halophilus 0 713 0 2675229 2 genus 0 149 Bacillus muralis species 1 264697 Bacillus simplex 564 0 1 1478 species 0 167 genus 1 1906945 species 1426 1 0 Parageobacillus thermoglucosidasius 167 1 29331 genus 213 0 species 1449 1 0 Amphibacillus xylanus 213 genus 2 1329200 0 364 species 1 255247 0 Fictibacillus arsenicus 166 0 Fictibacillus phosphorivorans 198 species 1221500 1 1 genus 5 400634 12 0 1674 Lysinibacillus 1 2636778 no rank 298 0 species 2072025 1 0 298 Lysinibacillus sp. YS11 Lysinibacillus fusiformis 284 0 28031 1 species 1 1145276 species Lysinibacillus varians 264 0 1 1421 species 816 Lysinibacillus sphaericus 0 557 0 182709 1 genus Oceanobacillus iheyensis 557 0 182710 1 species 84406 7 1 genus 1709 Virgibacillus 0 12 255 Virgibacillus halodenitrificans 0 1482 1 species 1 1473 species 312 Virgibacillus pantothenticus 0 312 Virgibacillus necropolis 0 163877 1 species species 2017483 1 0 Virgibacillus phasianinus 223 no rank 2 2620237 0 595 0 350 Virgibacillus sp. 6R species 1 1911587 species 1 403957 0 245 Virgibacillus sp. SK37 6 0 Anoxybacillus 1105 genus 1 6 150247 225 Anoxybacillus amylolyticus 0 1 294699 species 2 2639704 no rank 415 0 1490052 1 species Anoxybacillus sp. B2M1 224 0 1490057 1 species Anoxybacillus sp. B7M1 191 0 1 198467 species 171 Anoxybacillus gonensis 0 Anoxybacillus flavithermus 288 0 1 33934 species 86 0 351195 1 genus 1 1230341 species Salimicrobium jeotgali 86 0 1386 58 1 genus 22069 Bacillus 318 0 11365 0 86661 10 species group 0 424 Bacillus anthracis species 1 1392 species 1 1396 0 3918 Bacillus cereus 1428 1 species Bacillus thuringiensis 4580 0 3 2750818 no rank 712 0 357 Bacillus sp. FDAARGOS_235 0 1 1839798 species Bacillus sp. ABP14 183 0 1892404 1 species 2053832 1 species Bacillus sp. HBCD-sjtu 172 0 0 226 Bacillus cytotoxicus species 1 580165 species 1 658666 0 293 Bacillus bombysepticus 0 Bacillus mycoides 992 species 1 1405 Bacillus toyonensis 220 0 155322 1 species 0 Bacillus aryabhattai 273 species 1 412384 152 Bacillus horikoshii 0 1 79883 species 1792192 1 species group 227 0 0 227 Bacillus altitudinis species 293387 1 1 1398 species 209 Bacillus coagulans 0 117 Bacillus beveridgei 0 632773 1 species species 1664069 1 0 189 Bacillus glycinifermentans 0 Bacillus gibsonii 20 species 1 79881 0 153 Bacillus smithii species 1479 1 314 Bacillus cellulosilyticus 0 1 1413 species Bacillus cohnii 436 0 33932 1 species 561879 1 species Bacillus safensis 358 0 0 316 Bacillus methanolicus species 1 1471 9 653685 species group 2322 0 648 0 3 1938374 species subgroup 0 257 Bacillus velezensis species 492670 1 60 Bacillus siamensis 0 1 659243 species 0 331 Bacillus amyloliquefaciens species 1390 1 0 Bacillus subtilis 971 species 1 1423 Bacillus licheniformis 206 0 1402 1 species Bacillus atrophaeus 254 0 1 1452 species Bacillus vallismortis 19 0 1 72361 species 119858 1 species Bacillus sonorensis 95 0 1648923 1 species Bacillus paralicheniformis 129 0 species 1 1178537 0 140 Bacillus xiamenensis 0 1675 Bacillus megaterium species 1 1404 1 135735 species 369 Bacillus endophyticus 0 species 86664 1 0 Bacillus flexus 352 Bacillus infantis 101 0 324767 1 species 19 185979 no rank 1632 0 0 Bacillus sp. Pc3 28 species 1446792 1 species 2026248 1 0 110 Bacillus sp. 1s-1 27 Bacillus sp. LM 4-2 0 1 1628753 species species 1565991 1 0 192 Bacillus sp. X1(2014) 0 153 Bacillus sp. WP8 species 756828 1 0 Bacillus sp. OxB-1 88 species 98228 1 species 1 1574141 0 Bacillus sp. YP1 27 species 1 2009331 0 Bacillus sp. MD-5 43 563169 1 species 39 Bacillus sp. SJ-10 0 0 Bacillus sp. SDLI1 60 species 1774743 1 1 666686 species 286 Bacillus sp. 1NLA3E 0 species 1 1570330 0 Bacillus sp. BH072 20 0 37 Bacillus sp. 275 species 1 1941347 1856406 1 species 111 Bacillus sp. H15-1 0 Bacillus sp. (in: Bacteria) 27 0 1409 1 species species 1 1827146 0 Bacillus sp. IHB B 7164 224 Bacillus sp. Lzh-5 29 0 1 2049935 species species 1 1837130 0 88 Bacillus sp. FJAT-14266 43 Bacillus sp. JS 0 1 1127744 species 702 Bacillus pumilus 0 1408 1 species 1547283 1 species Bacillus weihaiensis 329 0 15 129337 1 genus 1385 Geobacillus 42 0 Geobacillus genomosp. 3 43 0 1921421 1 species species group 4 1505648 0 396 0 Geobacillus kaustophilus 101 species 1 1462 species 33938 1 0 Geobacillus thermocatenulatus 55 169283 1 species 35 Geobacillus lituanicus 0 species 1 33941 0 Geobacillus thermoleovorans 205 1 33940 species Geobacillus thermodenitrificans 131 0 129338 1 species Geobacillus subterraneus 56 0 1 1422 species Geobacillus stearothermophilus 126 0 no rank 2642459 6 0 591 30 Geobacillus sp. GHH01 0 1233873 1 species 0 145 Geobacillus sp. Y4.1MC1 species 581103 1 species 550542 1 0 15 Geobacillus sp. Y412MC52 0 Geobacillus sp. Y412MC61 23 species 1 544556 235 Geobacillus sp. WCH70 0 471223 1 species Geobacillus sp. C56-T3 143 0 691437 1 species 0 131 genus 1 459532 586416 1 species 131 Terribacillus aidingensis 0 1055323 1 genus 218 0 0 Aeribacillus pallidus 218 species 1 33936 family 1 8 186823 2 0 Alicyclobacillaceae 476 217 Tumebacillus 0 5 432330 3 1 genus 71 Tumebacillus algifaecis 0 1 1214604 species 1903704 1 species 141 Tumebacillus avium 0 genus 1 29330 0 114 0 Alicyclobacillus acidocaldarius 114 species 405212 1 1 genus 3 1129704 1 0 143 Kyrpidia 1 33943 species 73 Kyrpidia tusciae 0 69 Kyrpidia sp. EA-1 0 1 2055160 species 0 50 no rank 33974 1 genus 1930845 1 0 50 Ndongobacter massiliensis 50 0 1871025 1 species class 1 526524 9 1 0 Erysipelotrichia 621 8 526525 order 1 Erysipelotrichales 620 1 0 128827 7 family 1 Erysipelotrichaceae 619 5 0 0 46 genus 1 1729679 Faecalibaculum rodentium 46 0 1702221 1 species 1 544447 no rank 86 0 0 Erysipelotrichaceae bacterium I46 86 species 1834207 1 191303 1 genus 205 0 no rank 1 2638206 0 205 205 Turicibacter sp. H121 0 1 1712675 species 1 genus 1647 3 0 2 277 Erysipelothrix 0 130 Erysipelothrix rhusiopathiae species 1 1648 species 1514105 1 0 Erysipelothrix larvae 145 544448 102 phylum 1 Tenericutes 17444 1 0 0 324 no rank 2 2799557 Candidatus Izimaplasma 324 0 3 2 1912503 genus 1 no rank 2624196 1 0 321 0 Candidatus Izimaplasma sp. HR1 321 species 1 1541959 515 0 2 713063 no rank species 1911684 1 0 307 Tenericutes bacterium MO-XQ 0 208 Tenericutes bacterium MZ-XQ species 1911683 1 97 31969 1 class 16604 Mollicutes 0 49 13 186329 order 1 Acholeplasmatales 1512 2 0 2146 12 family 1 Acholeplasmataceae 1510 0 4 0 4 Acholeplasma 828 genus 1 2147 5 168 Acholeplasma laidlawii 0 2148 1 species species 1 61635 0 111 Acholeplasma brassicae species 38986 1 0 Acholeplasma palmae 329 1 35623 species 216 Acholeplasma oculi 0 19 0 Candidatus Phytoplasma 678 genus 1 6 33926 335 0 3 85620 species group Aster yellows witches'-broom phytoplasma 98 0 1 229545 species species 202462 1 0 Maize bushy stunt phytoplasma 96 1 100379 species Onion yellows phytoplasma 141 0 108 0 85632 1 species group 59748 1 species Candidatus Phytoplasma australiense 108 0 species group 85630 1 0 216 216 Candidatus Phytoplasma mali 0 1 37692 species Entomoplasmatales 6957 13 0 39 186328 order 1 2216 Entomoplasmataceae 3 0 14 33925 1 family 2 0 Entomoplasma 682 genus 1 5 46238 species 214888 1 0 162 Entomoplasma luminosum 0 Entomoplasma somnilux 211 species 1 215578 81459 1 species 255 Entomoplasma melaleucae 0 52 Entomoplasma freundtii 0 74700 1 species 0 33 Mesoplasma 1531 genus 1 8 46239 189 Mesoplasma tabanidae 0 1 219745 species 186 Mesoplasma coleopterae 0 324078 1 species 225999 1 species 175 Mesoplasma syrphidae 0 2149 1 species 192 Mesoplasma entomophilum 0 214 Mesoplasma chauliocola 0 1 216427 species Mesoplasma florum 399 0 1 2151 species Mesoplasma lactucae 143 0 1 138853 species Spiroplasmataceae 4728 6 0 2131 24 family 1 1 genus 23 2132 58 0 4722 Spiroplasma Spiroplasma diminutum 226 0 216936 1 species 203 Spiroplasma kunkelii 0 47834 1 species species 2145 1 0 262 Spiroplasma taiwanense 216946 1 species Spiroplasma turonicum 267 0 0 Spiroplasma atrichopogonis 146 species 1 1114980 225 Spiroplasma corruscae 0 216934 1 species species 1 216938 0 245 Spiroplasma helicoides Spiroplasma apis 188 0 1 2137 species 270 Spiroplasma cantharicola 0 1 362837 species 1 216937 species Spiroplasma floricola 295 0 Spiroplasma sabaudiense 160 0 1 216944 species 1 216945 species 165 Spiroplasma syrphidicola 0 0 282 Spiroplasma litorale species 1 216942 Spiroplasma eriocheiris 135 0 1 315358 species 0 207 Spiroplasma monobiae species 1 2136 2144 1 species Spiroplasma mirum 145 0 187 Spiroplasma citri 0 1 2133 species 2139 1 species Spiroplasma clarkii 220 0 no rank 2637901 2 0 368 0 Spiroplasma sp. TU-14 184 species 1898044 1 Spiroplasma sp. NBRC 100390 184 0 1 1914410 species 1 216935 species Spiroplasma culicicola 299 0 Spiroplasma chrysopicola 169 0 1 216933 species 2085 44 order 1 Mycoplasmatales 8086 0 36 Mycoplasmataceae 8050 0 15 2092 43 family 1 genus 12 2767358 0 2177 396 Mycoplasma bovis 0 28903 1 species species 171284 1 0 Mycoplasma cynos 191 0 Mycoplasma arginini 162 species 2094 1 0 194 Mycoplasma pulmonis species 2107 1 Mycoplasma californicum 95 0 1 2113 species 198 Mycoplasma canis 0 1 29555 species Mycoplasma bovigenitalium 141 0 2112 1 species Mycoplasma pullorum 142 0 1 48003 species species 1 29553 0 Mycoplasma bovirhinis 128 Mycoplasma agalactiae 235 0 2110 1 species 1 2109 species Mycoplasma synoviae 147 0 2115 1 species Mycoplasma fermentans 148 0 genus 1 27 2093 66 0 Mycoplasma 5482 species 1 86660 0 107 Mycoplasma dispar Mycoplasma hyorhinis 201 0 1 2100 species 1 65123 species Mycoplasma wenyonii 55 0 2128 1 species Mycoplasma flocculare 112 0 2098 1 species 250 Mycoplasma hominis 0 1 171632 species Mycoplasma ovis 61 0 0 221 Mycoplasma yeatsii species 1 51365 Mycoplasma hyopneumoniae 500 0 2099 1 species 984991 1 species 153 Mycoplasma parvum 0 Mycoplasma suis 93 0 1 57372 species 0 539 Mycoplasma haemofelis species 29501 1 Mycoplasma genitalium 94 0 1 2097 species 0 235 Mycoplasma putrefaciens species 1 2123 0 127 no rank 2683645 1 species 1 1749074 0 Mycoplasma sp. (ex Biomphalaria glabrata) 127 species 29554 1 0 147 Mycoplasma canadense 1 45362 species 160 Mycoplasma bovoculi 0 0 255 Mycoplasma mobile species 1 2118 165 Mycoplasma crocodyli 0 1 50052 species 0 201 Mycoplasma haemocanis species 136241 1 133 Mycoplasma gallisepticum 0 2096 1 species 1173 0 656088 3 species group 353 Mycoplasma capricolum 0 1 2095 species 303 Mycoplasma leachii 0 1 2105 species 0 Mycoplasma mycoides 517 species 2102 1 species 1 2104 0 Mycoplasma pneumoniae 45 species 1 2111 0 105 Mycoplasma arthritidis Mycoplasma penetrans 284 0 1 28227 species 1 0 376 Ureaplasma 1 genus 2129 3 species 2130 1 0 Ureaplasma urealyticum 174 201 Ureaplasma parvum 0 134821 1 species no rank 1859062 2 0 74 0 1 Thermobaculum 74 genus 1 2 262406 1 166501 species Thermobaculum terrenum 73 0 clade 151 1798711 0 793896 Cyanobacteria 793896 0 6 1117 151 phylum 1 0 5 Gloeobacteria 415 class 1 6 307596 307595 5 order 1 Gloeobacterales 410 0 2 family 1 4 1890422 12 0 Gloeobacteraceae 408 3 33071 genus 1 Gloeobacter 396 1 0 1416614 1 species 209 Gloeobacter kilaueensis 0 1 33072 species Gloeobacter violaceus 186 0 1890505 4 1 order 902 Chroococcidiopsidales 5 0 Chroococcidiopsidaceae 897 12 0 1890528 3 family 1 2 54298 genus 1 Chroococcidiopsis 885 3 0 Chroococcidiopsis thermalis 882 0 54299 1 species 323 0 1 1983111 no rank 323 cyanobacterium endosymbiont of Epithemia turgida 0 1 718217 species Synechococcales 763252 119 0 1890424 54 order 1 0 478 family 1 1890429 1 155977 genus 478 0 Acaryochloris marina 478 0 1 155978 species 0 447 family 2 2303730 447 Halomicronema 0 1 2 170610 1 genus 1 1209493 species Halomicronema hongdechloris 446 0 2 0 Merismopediaceae 711 family 1 5 1890428 genus 1 1142 4 8 0 Synechocystis 709 no rank 3 2640012 0 701 0 139 Synechocystis sp. PCC 6803 species 1 1148 1 2116702 species 139 Synechocystis sp. IPPAS B-1465 0 species 1147 1 0 Synechocystis sp. PCC 6714 423 Leptolyngbyaceae 1062 0 3 1890438 6 family 1 0 7 1059 Leptolyngbya 1 genus 47251 5 species 1184 1 0 254 Leptolyngbya boryana 798 0 2650499 3 no rank 0 Leptolyngbya sp. PCC 7376 339 species 1 111781 species 1752064 1 0 Leptolyngbya sp. NIES-3755 193 266 Leptolyngbya sp. O-77 0 1 1080068 species Synechococcaceae 83936 31 0 1890426 32 family 1 genus 146785 1 0 163 0 163 Thermosynechococcus elongatus species 146786 1 0 1104 76921 Synechococcus 1 genus 26 1129 239 Synechococcus elongatus 0 32046 1 species 0 75456 no rank 2626047 23 158 Synechococcus sp. PCC 6312 0 1 195253 species 1 64471 species Synechococcus sp. CC9311 3587 0 species 1280380 1 0 Synechococcus sp. KORDI-100 6059 7759 Synechococcus sp. KORDI-49 0 1 585423 species species 1 195248 0 Synechococcus sp. PCC 8807 157 1 316278 species 2825 Synechococcus sp. RCC307 0 0 Synechococcus sp. JA-2-3B'a(2-13) 180 species 1 321332 0 3915 Synechococcus sp. CC9902 species 316279 1 1173263 1 species Synechococcus sp. PCC 7502 332 0 167 Synechococcus sp. NIES-970 0 1 1827144 species 0 Synechococcus sp. WH 8102 8037 species 1 84588 32051 1 species 7912 Synechococcus sp. WH 7803 0 species 1916956 1 0 Synechococcus sp. SynAce01 2443 species 585425 1 0 Synechococcus sp. KORDI-52 7792 species 1350461 1 0 243 Synechococcus sp. UTEX 2973 0 Synechococcus sp. WH 8103 8011 species 1 29410 species 1 321327 0 187 Synechococcus sp. JA-3-3Ab 0 157 Synechococcus sp. PCC 73109 species 374982 1 0 Synechococcus sp. PCC 7002 144 species 1 32049 0 Synechococcus sp. WH 8109 7213 species 1 166314 110662 1 species 7875 Synechococcus sp. CC9605 0 1 195498 species Synechococcus sp. PCC 7117 169 0 134 Synechococcus sp. PCC 7003 0 1 374981 species 1 33070 species 122 Synechococcus lividus 0 335 0 13034 1 genus species 292566 1 0 335 Dactylococcopsis salina 1 genus 167375 3 0 22 6486 Cyanobium 0 Cyanobium gracile 3094 species 59930 1 no rank 2627006 1 0 3370 0 Cyanobium sp. NIES-981 3370 species 1 1851505 672 0 2 1890436 family 672 Pseudanabaena 1 0 2 1152 1 genus no rank 1 2593292 0 671 1 82654 species Pseudanabaena sp. PCC 7367 671 0 6 0 675827 Prochloraceae 1 family 1213 5 1 genus 1218 4 0 45 675821 Prochlorococcus 32598 0 2627481 2 no rank species 1501268 1 0 14384 Prochlorococcus sp. MIT 0604 0 Prochlorococcus sp. MIT 0801 18214 species 1501269 1 1219 1 species Prochlorococcus marinus 643178 0 7 52604 1 order 1693 Pleurocapsales 0 7 4 1890498 1 family 1372 Dermocarpellaceae 0 6 0 7 Stanieria 1366 genus 1 3 102115 no rank 1 2642663 0 828 1 1807358 species Stanieria sp. NIES-3757 828 0 1 102116 species 531 Stanieria cyanosphaera 0 314 Hyellaceae 0 8 2 1890500 1 family 44474 1 genus 306 0 Pleurocapsa minor 306 0 54308 1 species 14106 Nostocales 0 36 34 1161 1 order 0 1 1254 Hapalosiphonaceae 1 family 1892263 3 1190 2 1 genus 1253 Fischerella 0 9 494603 1 no rank 1244 0 Fischerella sp. NIES-3754 1244 0 1752063 1 species Nostocaceae 7451 0 19 18 1162 family 1 0 7 1625 Anabaena 1 genus 1163 4 1165 1 species Anabaena cylindrica 619 0 999 0 2 2619674 no rank 0 496 Anabaena sp. WA102 species 1647413 1 503 Anabaena sp. 90 0 1 46234 species 1 genus 10 1177 0 55 4898 Nostoc 7 2593658 no rank 3732 0 species 1 1869241 0 615 Nostoc sp. CENA543 0 478 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 1 1261031 species 1 28072 0 726 Nostoc sp. PCC 7524 425 Nostoc sp. PCC 7120 0 103690 1 species species 1751286 1 0 Nostoc sp. NIES-3756 500 species 1 1618022 0 408 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1 317936 species 580 Nostoc sp. PCC 7107 0 1 1306274 species 704 Nostoc flagelliforme 0 0 Nostoc punctiforme 407 species 272131 1 3 264688 genus 1 Trichormus 909 0 2 1 1164 species Trichormus azollae 403 0 species 1 264691 0 Trichormus variabilis 504 1219117 1 no rank 377 0 0 Nostocales cyanobacterium HT-58-2 377 species 1 1940762 3 1185 1 family 1052 Rivulariaceae 0 22 2 0 1030 Rivularia 1 genus 373984 2 no rank 2676603 1 0 1028 373994 1 species 1028 Rivularia sp. PCC 7116 0 0 3936 family 8 2661849 3936 Calothrix 28 0 1186 8 1 genus 3406 0 6 2619626 no rank Calothrix sp. NIES-4101 524 0 1 2005461 species 2005462 1 species 627 Calothrix sp. NIES-3974 0 433 Calothrix sp. PCC 7507 0 99598 1 species species 1337936 1 0 Calothrix sp. 336/3 394 752 Calothrix sp. NIES-4071 0 1 2005469 species 676 Calothrix sp. NIES-2098 0 1 1954171 species species 1 32054 0 Calothrix parietina 502 0 13199 subclass 1301283 44 1 order 1118 26 23 0 8770 Chroococcales family 1 4 1890449 0 5 Microcystaceae 1459 0 6 Microcystis 1454 genus 1 1125 3 0 1050 Microcystis aeruginosa species 1 1126 398 0 1 2643300 no rank species 1 1967666 0 398 Microcystis sp. MC19 0 3 738 Cyanobacteriaceae 1 family 1890452 3 1 0 Cyanobacterium 735 genus 1 2 102234 0 734 Cyanobacterium aponinum species 379064 1 8 1890464 family 1 Chroococcaceae 3539 0 18 385 Gloeocapsa 0 6 102231 2 1 genus 0 379 no rank 1 2623012 379 Gloeocapsa sp. PCC 7428 0 1173026 1 species 1357 Geminocystis 5 0 3 669357 1 genus 1352 0 2 2625037 no rank species 1617448 1 0 558 Geminocystis sp. NIES-3709 0 794 Geminocystis sp. NIES-3708 species 1 1615909 0 2 1779 Chondrocystis 1 genus 2 268175 0 1777 no rank 2648896 1 species 2005460 1 0 1777 Chondrocystis sp. NIES-4102 family 1 1890450 10 12 0 Aphanothecaceae 3011 genus 2 2546365 0 613 0 613 species 2 2546366 41431 1 strain 299 Cyanothece sp. PCC 8801 0 0 Cyanothece sp. PCC 8802 314 strain 395962 1 2 28070 genus 1149 0 0 629 species 1 2546359 1 497965 strain 629 Cyanothece sp. PCC 7822 0 520 0 2546356 1 species 1 65393 strain Cyanothece sp. PCC 7424 520 0 434 0 1 263510 genus 0 434 species 1 2546360 434 Cyanothece sp. ATCC 51142 0 1 43989 strain 1 0 453 Candidatus Atelocyanobacterium 1 genus 2 1453359 Candidatus Atelocyanobacterium thalassa 452 0 713887 1 species 350 0 92682 2 no rank 2 0 Halothece 350 genus 1 76023 2 1 2632878 no rank 348 0 348 Halothece sp. PCC 7418 0 65093 1 species 1 order 18 1150 0 40 4429 Oscillatoriales family 2 1892255 0 424 2 241421 genus 1 Crinalium 424 0 2 241425 1 species 422 Crinalium epipsammum 0 1892252 4 1 family 1137 Microcoleaceae 0 15 1 1205 genus 855 0 0 Trichodesmium erythraeum 855 species 1 1206 2 44471 1 genus 267 Microcoleus 0 1 2642155 1 no rank 266 0 266 Microcoleus sp. PCC 7113 0 1 1173027 species 1 family 5 1892254 0 29 2233 Oscillatoriaceae 1155738 1 genus 914 0 species 1155739 1 0 Moorea producens 914 Oscillatoria 1290 4 0 3 1158 genus 1 0 612 Oscillatoria nigro-viridis species 1 482564 1 118323 species 674 Oscillatoria acuminata 0 0 14 306 Coleofasciculaceae 1 family 1892251 3 2 63132 1 genus 292 Geitlerinema 0 7 285 0 2648775 1 no rank 0 Geitlerinema sp. PCC 7407 285 species 1173025 1 0 31 Cyanothecaceae 289 family 1 1892249 3 43988 2 genus 1 Cyanothece 258 10 0 0 248 no rank 1 2649277 species 395961 1 0 Cyanothece sp. PCC 7425 248 phylum 57723 16 0 1052 91 0 2 1562566 class 0 1 Chloracidobacterium 91 genus 1 2 458032 species 458033 1 0 Chloracidobacterium thermophilum 90 14 204432 1 class 961 Acidobacteriia 0 7 1 order 10 204433 7 0 789 Acidobacteriales Acidobacteriaceae 782 9 0 204434 9 family 1 0 1 Candidatus Koribacter 74 genus 1 2 658061 73 Candidatus Koribacter versatilis 0 1 658062 species 0 193 genus 1 33973 0 193 Acidobacterium capsulatum species 1 33075 genus 940557 2 0 268 species 1 940614 0 94 Granulicella mallensis 1 940615 species 174 Granulicella tundricola 0 392733 3 1 genus 238 Terriglobus 1 0 142 Terriglobus saanensis 0 1 870903 species 1 392734 species 95 Terriglobus roseus 0 3 332160 order 1 Solibacterales 165 0 1 164 0 2 332161 family genus 1 2 332162 1 0 Candidatus Solibacter 164 163 Candidatus Solibacter usitatus 0 1 332163 species 0 11991 phylum 23 32066 203490 23 1 class 11991 Fusobacteriia 0 11 order 1 203491 22 0 10 Fusobacteriales 11980 2548 Leptotrichiaceae 2 0 1129771 10 1 family 528 Streptobacillus 0 1 2 34104 1 genus species 1 34105 0 527 Streptobacillus moniliformis genus 168808 1 0 262 0 Sneathia amnii 262 species 1 187101 genus 1 32067 5 7 0 Leptotrichia 1484 Leptotrichia buccalis 372 0 1 40542 species 3 2633022 no rank 1105 0 712357 1 species 329 Leptotrichia sp. oral taxon 212 0 1785996 1 species 380 Leptotrichia sp. oral taxon 847 0 712368 1 species Leptotrichia sp. oral taxon 498 396 0 272 0 32068 1 genus species 826 1 0 272 Sebaldella termitidis family 1 11 203492 5 0 Fusobacteriaceae 9422 9142 Fusobacterium 0 20 9 848 1 genus 1 851 species 3881 Fusobacterium nucleatum 0 0 Fusobacterium hwasookii 912 species 1583098 1 Fusobacterium varium 1053 0 1 856 species 0 187 Fusobacterium necrophorum species 1 859 species 861 1 0 Fusobacterium ulcerans 502 1 850 species Fusobacterium mortiferum 530 0 1771 Fusobacterium periodonticum 0 860 1 species species 849 1 0 286 Fusobacterium gonidiaformans 0 275 genus 1 167639 species 1 167642 0 Ilyobacter polytropus 275 0 511 phylum 74152 7 1 class 4 447830 0 1 292 Endomicrobia 291 0 1783344 3 order family 1783343 3 0 291 0 3 291 Endomicrobium 1 genus 3 1408194 Candidatus Endomicrobium trichonymphae 133 0 1408204 1 species 0 Endomicrobium proavitum 155 species 1408281 1 140 0 1 99260 no rank 0 140 uncultured Termite group 1 bacterium species 1 167965 641853 2 class 79 0 79 0 641854 2 order family 641876 2 0 79 0 1 79 Elusimicrobium 1 genus 2 423604 species 1 423605 0 78 Elusimicrobium minutum clade 3 2498710 0 171 0 171 phylum 67814 3 0 3 171 Caldisericia 1 class 693071 3 0 168 order 693072 2 0 168 family 2 693073 693074 2 genus 1 Caldisericum 168 0 1 693075 1 species 167 Caldisericum exile 0 0 88 phylum 4 200938 class 4 118001 0 88 1 0 88 Chrysiogenales 1 order 189769 4 0 3 Chrysiogenaceae 87 family 1 3 189770 Desulfurispirillum 84 1 0 393029 2 genus 1 1 936456 species Desulfurispirillum indicum 83 0 1950 1224 phylum 1 Proteobacteria 528861 152 0 class 11 1553900 0 1147 1 order 213481 5 2 0 480 Bdellovibrionales 0 9 478 Bdellovibrionaceae 1 family 213483 4 Bdellovibrio 469 2 0 958 3 genus 1 0 Bdellovibrio bacteriovorus 330 species 1 959 137 Bdellovibrio exovorus 0 453816 1 species 2024979 6 order 1 Bacteriovoracales 667 9 0 0 1 Halobacteriovoraceae 456 family 1 1652132 3 1 genus 2 1652133 1 0 455 Halobacteriovorax 0 454 Halobacteriovorax marinus species 97084 1 0 202 family 263369 2 1 0 202 Bacteriovorax 1 genus 2 146784 Bacteriovorax stolpii 201 0 1 960 species 195 0 5 580370 class order 1 5 580371 2 0 Mariprofundales 195 family 1 4 580372 0 1 Mariprofundaceae 193 0 1 Mariprofundus 192 genus 1 3 377315 1921086 1 species Mariprofundus aestuarium 86 0 1921087 1 species Mariprofundus ferrinatatus 105 0 Gammaproteobacteria 244122 458 0 868 1236 class 1 9707 Oceanospirillales 0 48 135619 68 1 order 9 224372 1 family 1065 Alcanivoracaceae 0 13 27 0 Alcanivorax 862 genus 1 59753 6 1306787 1 species 202 Alcanivorax pacificus 0 Alcanivorax xenomutans 182 0 1094342 1 species 285091 1 species 171 Alcanivorax dieselolei 0 119 0 2638842 1 no rank Alcanivorax sp. NBRC 101098 119 0 1113728 1 species 0 161 Alcanivorax borkumensis species 1 59754 1 genus 2025617 2 8 0 190 Ketobacter species 1917421 1 0 Ketobacter alkanivorans 182 5 0 924 Kangiellaceae 1 family 1920240 6 261963 5 1 genus 919 Kangiella 14 0 species 1561924 1 0 243 Kangiella profundi 1 914150 species 237 Kangiella geojedonensis 0 species 1 261964 0 Kangiella koreensis 237 Kangiella sediminilitoris 188 0 1144748 1 species 224379 2 family 156 0 156 Hahella 2 0 158481 2 1 genus species 158327 1 0 154 Hahella chejuensis 255527 4 1 family 614 Saccharospirillaceae 0 2 230494 2 1 genus 352 Reinekea 0 3 1336806 1 species 349 Reinekea forsetii 0 1445504 1 genus 260 0 1 1445505 species Gynuella sunshinyii 260 0 family 1 30 28256 28 0 Halomonadaceae 4389 no rank 114403 4 0 1129 665 Candidatus Portiera 0 8 2 235572 1 genus 657 Candidatus Portiera aleyrodidarum 0 91844 1 species genus 1 114185 0 113 114186 1 species Candidatus Carsonella ruddii 113 0 0 351 genus 1495768 1 351 Candidatus Evansia muelleri 0 1495769 1 species 2 404432 1 genus 167 Salinicola 0 2 1 1771309 species 165 Salinicola tamaricis 0 202 0 204286 1 genus 1 28258 species Cobetia marina 202 0 genus 1 15 2745 0 37 Halomonas 2249 0 Halomonas beimenensis 252 species 1 475662 species 1 1178482 0 Halomonas huangheensis 290 0 169 Halomonas aestuarii species 1897729 1 0 117 Halomonas chromatireducens species 507626 1 species 1 213554 0 93 Halomonas campaniensis 2609666 8 no rank 1152 0 species 2136172 1 0 Halomonas sp. SF2003 142 136 Halomonas sp. 'Soap Lake #6' 0 1949203 1 species 113 Halomonas sp. GFAJ-1 0 1118153 1 species species 1883416 1 0 Halomonas sp. 1513 147 species 1504981 1 0 137 Halomonas sp. KO116 0 188 Halomonas sp. R57-5 species 1610576 1 1 1962264 species Halomonas sp. 'Soap Lake #7' 136 0 species 1971364 1 0 Halomonas sp. GT 153 139 Halomonas hydrothermalis 0 115561 1 species 1 genus 2 376488 0 1 134 Halotalea 133 Halotalea alkalilenta 0 1 376489 species 3 0 Kushneria 340 genus 1 504090 3 species 157779 1 0 Kushneria marisflavi 124 Kushneria konosiri 213 0 698828 1 species genus 1 2 42054 0 1 Chromohalobacter 140 0 139 Chromohalobacter salexigens species 1 158080 Oleiphilaceae 314 0 18 191033 3 family 1 Oleiphilus 296 0 5 2 141450 genus 1 Oleiphilus messinensis 291 0 141451 1 species 1 family 13 135620 15 0 2197 Oceanospirillaceae 48075 2 1 genus 363 Marinobacterium 0 3 0 Marinobacterium aestuarii 360 species 1 1821621 genus 1 2 188907 0 1 Oleispira 309 species 188908 1 0 308 Oleispira antarctica 2 187492 1 genus 279 Thalassolituus 1 0 0 Thalassolituus oleivorans 278 species 1 187493 1537406 2 1 genus 275 Bacterioplanes 0 1 274 Bacterioplanes sanyensis 0 1 1249553 species 0 7 956 Marinomonas 1 genus 4 28253 0 413 no rank 1 196814 413 Marinomonas sp. MWYL1 0 400668 1 species 936476 1 species Marinomonas posidonica 249 0 species 1 119864 0 Marinomonas mediterranea 287 order 1 27 135624 21 0 Aeromonadales 4126 family 1 84642 26 0 26 Aeromonadaceae 4105 genus 129577 1 0 151 1 2636315 no rank 151 0 151 Oceanimonas sp. GK1 0 511062 1 species 1 43947 genus 103 0 species 1 43948 0 103 Tolumonas auensis Oceanisphaera 358 4 0 3 225143 genus 1 Oceanisphaera profunda 199 0 1 1416627 species 0 155 Oceanisphaera sp. AMac2203 species 1903694 1 Zobellella 201 0 3 347533 2 genus 1 198 Zobellella denitrificans 0 347534 1 species 642 18 genus 1 Aeromonas 3266 0 117 0 Aeromonas caviae 67 species 1 648 0 991 no rank 257493 8 0 Aeromonas sp. ASNIH5 117 species 1758179 1 Aeromonas sp. ASNIH2 83 0 1636607 1 species 60 Aeromonas sp. ASNIH7 0 1920107 1 species Aeromonas sp. CU5 141 0 1 2033033 species species 2033032 1 0 Aeromonas sp. CA23 140 1 1636608 species Aeromonas sp. ASNIH3 69 0 1 1636606 species 207 Aeromonas sp. ASNIH1 0 0 174 Aeromonas sp. ASNIH4 species 1636609 1 Aeromonas aquatica 111 0 558964 1 species Aeromonas dhakensis 98 0 1 196024 species 681 Aeromonas hydrophila 0 644 1 species Aeromonas schubertii 94 0 652 1 species 948519 1 species 91 Aeromonas rivipollensis 0 1 645 species 561 Aeromonas salmonicida 0 0 Aeromonas veronii 351 species 1 654 species 1 651 0 104 Aeromonas media 3792 Cellvibrionales 0 17 26 1706369 1 order 1811 Cellvibrionaceae 13 0 11 1706371 1 family 1 0 Saccharophagus 288 genus 1 2 316625 287 Saccharophagus degradans 0 86304 1 species genus 2036021 1 0 509 509 Agarilytica rhodophyticola 0 1737490 1 species 578 Cellvibrio 0 3 4 10 1 genus 0 396 no rank 2 2624793 0 220 Cellvibrio sp. PSBB006 species 1987723 1 Cellvibrio sp. PSBB023 176 0 1945512 1 species 179 Cellvibrio japonicus 0 155077 1 species 156 Simiduia 1 0 447467 2 1 genus 447471 1 species 155 Simiduia agarivorans 0 267 0 2425 1 genus 1 2426 species Teredinibacter turnerae 267 0 1 family 1706375 5 0 14 819 Spongiibacteraceae 397 0 1084558 1 genus Oceanicoccus sagamiensis 397 0 716816 1 species 193 0 1 1434050 genus 1470434 1 species Zhongshania aliphaticivorans 193 0 215 Spongiibacter 1 0 630749 2 1 genus no rank 1 2631504 0 214 0 214 Spongiibacter sp. IMCC21906 species 1 1620392 Microbulbiferaceae 603 5 0 1706373 5 family 1 0 15 Microbulbifer 598 genus 1 4 48073 species 1 252514 0 Microbulbifer thermotolerans 193 0 Microbulbifer aggregans 229 species 1769779 1 260552 1 species Microbulbifer agarilyticus 161 0 4 1706372 family 1 Halieaceae 542 4 0 1217416 3 1 genus 538 Halioglobus 0 16 species 1 930806 0 Halioglobus pacificus 258 930805 1 species 264 Halioglobus japonicus 0 3 1934945 order 1 Immundisolibacterales 185 2 0 0 2 Immundisolibacteraceae 183 family 1 2 1934946 genus 1934947 1 0 181 1 1810504 species Immundisolibacter cernigliae 181 0 45455 Vibrionales 15 0 135623 43 1 order 1 family 641 42 57 0 45440 Vibrionaceae 1 genus 2 2042066 0 2 798 Paraphotobacterium 0 796 Paraphotobacterium marinum species 1755811 1 148 0 1 246861 genus 0 Grimontia hollisae 148 species 1 673 34219 Vibrio 234 0 662 30 1 genus species 687 1 0 Vibrio gazogenes 289 0 459 species group 1 1891919 Vibrio tubiashii 459 0 1 29498 species species 1 676 0 Vibrio fluvialis 227 Vibrio hyugaensis 646 0 1 1534743 species 230 Vibrio tritonius 0 1435069 1 species 1 2025808 species 202 Vibrio qinghaiensis 0 0 Vibrio furnissii 309 species 1 29494 2614977 2 no rank 341 0 species 1 2014742 0 Vibrio sp. 2521-89 135 1116375 1 species 206 Vibrio sp. EJY3 0 717610 10 species group 22992 0 0 2292 Vibrio harveyi species 1 669 species 1 680 0 2804 Vibrio campbellii species 696485 1 0 2141 Vibrio owensii 0 Vibrio rotiferianus 8694 species 1 190895 0 3835 Vibrio alginolyticus species 1 663 2 2315253 species subgroup 605 0 species 50719 1 0 430 Vibrio diabolicus Vibrio antiquarius 175 0 1 150340 species 670 1 species Vibrio parahaemolyticus 1523 0 612 Vibrio jasicida 0 1 766224 species Vibrio natriegens 486 0 691 1 species 0 616 Vibrio anguillarum species 55601 1 1 674 species 271 Vibrio mimicus 0 Vibrio nigripulchritudo 166 0 1 28173 species 553239 1 species Vibrio breoganii 264 0 0 636 Vibrio scophthalmi species 1 45658 Vibrio vulnificus 1196 0 672 1 species 0 462 Vibrio cholerae species 666 1 0 Vibrio tapetis 588 species 52443 1 species 1 190893 0 Vibrio coralliilyticus 656 Vibrio tasmaniensis 3435 0 212663 1 species 4 657 genus 1 Photobacterium 8594 1 0 Photobacterium gaetbulicola 161 0 1 1295392 species 393 Photobacterium profundum 0 74109 1 species 1 38293 species Photobacterium damselae 8039 0 genus 1 4 511678 4 0 Aliivibrio 1624 1 40269 species Aliivibrio salmonicida 312 0 822 Aliivibrio wodanis 0 80852 1 species 1 668 species Aliivibrio fischeri 486 0 20 118969 order 1 Legionellales 6246 0 1 7 0 5505 Legionellaceae 1 family 14 444 289 0 465 1 genus Tatlockia micdadei 289 0 451 1 species 0 44 5209 Legionella 1 genus 12 445 1 28087 species Legionella sainthelensi 495 0 0 Legionella clemsonensis 326 species 1 1867846 0 Legionella waltersii 384 species 1 66969 0 Legionella hackeliae 311 species 1 449 species 1 450 0 400 Legionella longbeachae 1 45067 species Legionella lansingensis 306 0 1 29423 species Legionella oakridgensis 290 0 96230 1 species 431 Legionella fallonii 0 Legionella endosymbiont of Polyplax serrata 441 0 1 2005262 species 0 Legionella pneumophila 1617 species 446 1 1 452 species 164 Legionella spiritensis 0 10 0 Coxiellaceae 740 family 1 118968 5 134284 1 no rank 215 0 1592897 1 species Coxiella-like endosymbiont 215 0 1 genus 776 3 0 6 515 Coxiella 0 Coxiella burnetii 278 species 777 1 1 2676648 no rank 231 0 325775 1 species 231 Coxiella endosymbiont of Amblyomma americanum 0 136 0 2 135615 order family 868 2 0 136 Dichelobacter 136 1 0 869 2 genus 1 species 1 870 0 Dichelobacter nodosus 135 Enterobacterales 57651 0 150 91347 239 order 1 129 0 Enterobacteriaceae 25640 family 1 116 543 Kosakonia 448 0 4 5 1330547 genus 1 1 208223 species Kosakonia cowanii 88 0 109 Kosakonia oryzae 0 1 497725 species species 283686 1 0 142 Kosakonia radicincitans 105 Kosakonia sacchari 0 1158459 1 species genus 1330546 2 0 288 species 1 1334193 0 110 [Enterobacter] lignolyticus 1 61647 species Pluralibacter gergoviae 178 0 4321 Escherichia 9 0 561 5 1 genus 208962 1 species Escherichia albertii 178 0 species 1 1499973 0 Escherichia marmotae 50 4034 Escherichia coli 0 1 562 species 0 Escherichia fergusonii 50 species 1 564 genus 1 2 158483 0 1 Cedecea 317 316 Cedecea neteri 0 1 158822 species 409304 2 1 genus 342 Candidatus Ishikawaella 2 0 0 Candidatus Ishikawaella capsulata 340 species 1 168169 14 544 1 genus 1802 Citrobacter 44 0 species 545 1 0 86 Citrobacter koseri 169 0 2644389 2 no rank species 1 1920110 0 Citrobacter sp. CFNIH10 78 Citrobacter sp. FDAARGOS_156 91 0 1702170 1 species 75 Citrobacter rodentium 0 1 67825 species species group 1344959 7 0 966 species 1 2077149 0 Citrobacter freundii complex sp. CFNIH9 60 Citrobacter freundii complex sp. CFNIH4 85 0 1 2077148 species 0 Citrobacter freundii complex sp. CFNIH3 51 species 2077147 1 species 546 1 0 Citrobacter freundii 415 species 1 2066049 0 Citrobacter freundii complex sp. CFNIH2 73 1 57706 species 148 Citrobacter braakii 0 0 Citrobacter werkmanii 134 species 67827 1 275 Citrobacter farmeri 0 67824 1 species 1 35703 species Citrobacter amalonaticus 187 0 1 401618 genus 269 0 269 Candidatus Riesia pediculicola 0 1 401619 species 0 1073 no rank 36866 5 0 62 Enterobacteriaceae bacterium strain FGI 57 species 1 693444 1 2066051 species 80 Enterobacteriaceae bacterium ENNIH1 0 species 1920128 1 0 80 Enterobacteriaceae bacterium ENNIH3 species 1 891974 0 Plautia stali symbiont 781 1920109 1 species Enterobacteriaceae bacterium ENNIH2 70 0 0 86 genus 579 1 Kluyvera intermedia 86 0 61648 1 species 3 590 genus 1 Salmonella 3586 4 0 3283 Salmonella enterica 0 28901 1 species Salmonella bongori 299 0 1 54736 species 71 Shimwellia 1 0 2 1335483 1 genus 563 1 species Shimwellia blattae 70 0 1 genus 570 10 70 0 5259 Klebsiella species 1134687 1 0 341 Klebsiella michiganensis 107 Klebsiella quasivariicola 0 2026240 1 species 0 2325 Klebsiella pneumoniae species 573 1 244366 1 species Klebsiella variicola 246 0 species 1 548 0 Klebsiella aerogenes 1141 0 231 no rank 2 2608929 species 1934254 1 0 118 Klebsiella sp. M5al species 1 1905288 0 Klebsiella sp. LTGPAF-6F 113 1463165 1 species 137 Klebsiella quasipneumoniae 0 species 1 571 0 Klebsiella oxytoca 661 1 genus 22 547 0 68 2318 Enterobacter 1803 0 354276 12 species group 0 Enterobacter cloacae complex 'Hoffmann cluster IV' 45 species 1812935 1 1 550 species Enterobacter cloacae 814 0 0 Enterobacter asburiae 161 species 61645 1 no rank 2757714 3 0 141 0 Enterobacter cloacae complex sp. ECNIH7 66 species 1 1915310 species 1 2027919 0 35 Enterobacter cloacae complex bacterium 0 40 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 species 1 2077137 40 Enterobacter ludwigii 0 1 299767 species 0 28 Enterobacter cancerogenus species 69218 1 399 0 Enterobacter hormaechei 513 species 1 3 158836 79 Enterobacter cloacae complex 'Hoffmann cluster III' 0 1812934 1 subspecies 1296536 1 subspecies 35 Enterobacter xiangfangensis 0 0 Enterobacter kobei 61 species 208224 1 447 0 2608935 9 no rank 33 Enterobacter sp. Crenshaw 0 1 1977566 species 0 Enterobacter sp. SA187 58 species 1 1914861 1 1166130 species 78 Enterobacter sp. R4-368 0 0 Enterobacter sp. FY-07 63 species 1 1692238 0 17 Enterobacter sp. HK169 species 1868135 1 1 2051905 species Enterobacter sp. CRENT-193 49 0 1 399742 species Enterobacter sp. 638 64 0 Enterobacter sp. E20 42 0 1 1560339 species 43 Enterobacter sp. ODB01 0 1827481 1 species Leclercia 312 0 4 4 83654 genus 1 0 Leclercia adecarboxylata 128 species 83655 1 0 180 no rank 2627398 2 0 Leclercia sp. LSNIH3 86 species 1920116 1 94 Leclercia sp. LSNIH1 0 1 1920114 species 191675 18 no rank 3376 0 0 3376 clade 84563 18 0 156 genus 1 1906661 species 1070130 1 0 156 Candidatus Gullanella endobia clade 7 84564 0 1730 1730 Candidatus Blochmannia 14 0 203804 7 1 genus species 251542 1 0 Candidatus Blochmannia chromaiodes 264 711328 2 no rank 526 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 212 0 1 1505596 species species 1505597 1 0 314 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 Candidatus Blochmannia pennsylvanicus 255 species 1 101534 0 309 Candidatus Blochmannia floridanus species 203907 1 species 1 251535 0 Candidatus Blochmannia vafer 362 4 146507 clade 545 0 1 genus 568987 2 0 1 210 Candidatus Hamiltonella 209 Candidatus Hamiltonella defensa 0 138072 1 species 0 secondary endosymbiont of Heteropsylla cubana 220 species 134287 1 species 1199245 1 0 secondary endosymbiont of Ctenarytaina eucalypti 115 1 1682492 genus 442 0 0 Candidatus Tachikawaea gelatinosa 442 species 1 1410383 1 1906657 genus 57 0 0 57 Candidatus Doolittlea endobia species 1778262 1 1 199891 clade 178 0 secondary endosymbiont of Trabutina mannipara 178 0 1 1835721 species 83 0 1 1906659 genus species 1 1778263 0 Candidatus Hoaglandella endobia 83 1906660 2 1 genus 185 Candidatus Mikella 0 1 Candidatus Mikella endobia 184 0 1778264 1 species 0 48 genus 1 1048757 0 Candidatus Moranella endobia 48 species 1 1048758 genus 1 8 413496 0 26 Cronobacter 672 species 1 413497 0 Cronobacter dublinensis 84 species 1 535744 0 80 Cronobacter universalis 0 Cronobacter turicensis 85 species 413502 1 1 413501 species 67 Cronobacter muytjensii 0 species 413503 1 0 78 Cronobacter malonaticus Cronobacter condimenti 108 0 1 1163710 species 28141 1 species 144 Cronobacter sakazakii 0 311 0 1330545 3 genus 0 Lelliottia nimipressuralis 40 species 1 69220 1 61646 species 200 Lelliottia amnigena 0 1 1907578 species 71 Lelliottia jeotgali 0 160674 3 1 genus 478 Raoultella 0 4 370 Raoultella ornithinolytica 0 1 54291 species species 575 1 0 Raoultella planticola 104 3 0 Shigella 134 genus 1 620 4 622 1 species Shigella dysenteriae 75 0 623 1 species Shigella flexneri 32 0 24 0 2629414 1 no rank 0 24 Shigella sp. PAMC 28760 species 1 1813821 3228 Pectobacteriaceae 0 7 1903410 20 1 family 1 genus 122277 6 0 14 1103 Pectobacterium 0 Pectobacterium atrosepticum 106 species 1 29471 1 1905730 species 430 Pectobacterium parmentieri 0 0 Pectobacterium wasabiae 140 species 55208 1 species 554 1 0 Pectobacterium carotovorum 307 1 2042057 species 106 Pectobacterium polaris 0 genus 1 84565 5 20 0 Sodalis 847 105 Sodalis glossinidius 0 63612 1 species 1239307 1 species Sodalis praecaptivus 163 0 Candidatus Sodalis pierantonius 112 0 1486991 1 species 1929246 1 species 447 Sodalis endosymbiont of Henestaris halophilus 0 138 Brenneria 0 1 71655 2 1 genus species 1109412 1 0 137 Brenneria goodwinii genus 1 6 204037 18 0 Dickeya 1133 0 94 Dickeya fangzhongdai species 1778540 1 102 Dickeya dianthicola 0 1 204039 species 1 1089444 species Dickeya solani 173 0 0 Dickeya dadantii 112 species 1 204038 Dickeya zeae 634 0 1 204042 species family 1 13 1903412 10 0 Hafniaceae 6020 384 Hafnia 0 6 568 3 1 genus species 569 1 0 Hafnia alvei 277 no rank 1 2621980 0 101 species 1848580 1 0 101 Hafnia sp. CBA7124 21 0 Edwardsiella 5523 genus 1 8 635 1821960 1 species 230 Edwardsiella anguillarum 0 1 67780 species 152 Edwardsiella ictaluri 0 361 0 2 2676541 no rank 0 163 Edwardsiella sp. EA181011 species 1578828 1 198 Edwardsiella sp. LADL05-105 0 1650654 1 species species 1263550 1 0 141 Edwardsiella piscicida Edwardsiella hoshinae 73 0 93378 1 species 636 1 species Edwardsiella tarda 4545 0 103 0 82982 1 genus 82983 1 species Obesumbacterium proteus 103 0 1 family 1903411 36 12 0 9262 Yersiniaceae genus 1745211 1 0 81 81 Chania multitudinisentens 0 1 1639108 species 13 629 genus 1 Yersinia 5355 52 0 3050 0 1649845 3 species group 0 Yersinia similis 1614 species 367190 1 908 Yersinia pestis 0 632 1 species 0 528 Yersinia pseudotuberculosis species 1 633 species 1 630 0 Yersinia enterocolitica 618 Yersinia rohdei 137 0 29485 1 species species 29484 1 0 Yersinia frederiksenii 403 no rank 2653513 1 0 163 Yersinia sp. FDAARGOS_228 163 0 1839800 1 species 29486 1 species 244 Yersinia ruckeri 0 species 263819 1 0 Yersinia aleksiciae 139 0 177 Yersinia intermedia species 1 631 0 Yersinia aldovae 209 species 1 29483 species 28152 1 0 Yersinia kristensenii 163 Serratia 3324 0 90 16 613 genus 1 82996 1 species 247 Serratia plymuthica 0 0 121 Serratia rubidaea species 61652 1 0 1179 no rank 8 2647522 0 Serratia sp. AS12 86 species 768490 1 671990 1 species 91 Serratia sp. FGI94 0 species 768493 1 0 Serratia sp. AS13 86 1327989 1 species Serratia sp. FS14 132 0 1 2033438 species Serratia sp. MYb239 116 0 0 Serratia sp. ATCC 39006 100 species 104623 1 1 488142 species Serratia sp. SCBI 482 0 0 86 Serratia sp. SSNIH1 species 1 1758196 28151 1 species Serratia proteamaculans 62 0 species 1 61651 0 Serratia ficaria 107 0 Serratia marcescens 969 species 1 615 0 Serratia fonticola 403 species 47917 1 0 146 Serratia liquefaciens species 614 1 1 929812 genus 132 0 132 Gibbsiella quercinecans 0 929813 1 species 0 9 358 Rahnella 1 genus 34037 4 Rahnella aquatilis 116 0 1 34038 species no rank 2635087 2 0 233 species 1 741091 0 115 Rahnella sp. Y9602 species 1 1805933 0 118 Rouxiella sp. ERMR1:05 8435 Erwiniaceae 0 26 28 1903409 1 family 1 genus 551 8 0 16 880 Erwinia 1 2622719 no rank 116 0 species 215689 1 0 Erwinia sp. Ejp617 116 100 Erwinia amylovora 0 552 1 species 0 Erwinia billingiae 187 species 1 182337 1 1619313 species 84 Erwinia gerundensis 0 93 Erwinia tasmaniensis 0 1 338565 species 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 185 species 1 1922217 1 79967 species 99 Erwinia pyrifoliae 0 4478 Buchnera 0 9 32199 2 1 genus 1 9 species 4469 Buchnera aphidicola 0 0 329 genus 2 2100764 0 206 Pantoea calida species 1 665913 0 123 Pantoea gaviniae species 1 665914 0 9 Wigglesworthia 863 genus 1 2 51228 Wigglesworthia glossinidia 854 0 51229 1 species 2 82986 genus 1 Tatumella 90 2 0 Tatumella citrea 88 0 1 53336 species genus 1 53335 11 0 38 Pantoea 1769 species 1235990 1 0 Candidatus Pantoea carbekii 267 species group 1 1654067 0 185 species 549 1 0 Pantoea agglomerans 185 1076550 1 species 104 Pantoea rwandensis 0 0 Pantoea ananatis 265 species 1 553 0 Pantoea vagans 355 species 1 470934 336 0 3 2630326 no rank 1 1484158 species 71 Pantoea sp. PSNIH1 0 Pantoea sp. PSNIH2 127 0 1484157 1 species 0 Pantoea sp. At-9b 138 species 592316 1 0 103 Pantoea alhagi species 1891675 1 species 66269 1 0 Pantoea stewartii 116 no rank 2 451511 0 230 Plesiomonas 230 2 0 2 702 genus 1 species 1 703 0 Plesiomonas shigelloides 228 1903416 2 family 128 0 128 Pragia 0 5 82984 2 1 genus 0 123 Pragia fontium species 82985 1 4558 Morganellaceae 0 23 1903414 21 1 family Arsenophonus 486 0 2 637 2 genus 1 species 634113 1 0 484 Arsenophonus symbiont of Lipoptena fortisetosa 0 2 924 Providencia 1 genus 586 4 412 Providencia stuartii 0 1 588 species 0 Providencia rettgeri 296 species 587 1 1 126385 species Providencia alcalifaciens 214 0 Xenorhabdus 992 0 5 6 626 genus 1 Xenorhabdus poinarii 160 0 1 40577 species 628 1 species 131 Xenorhabdus nematophila 0 species 1 40576 0 414 Xenorhabdus bovienii species 1 351679 0 177 Xenorhabdus hominickii 0 Xenorhabdus doucetiae 105 species 351671 1 genus 1 581 0 148 0 148 Morganella morganii species 582 1 0 6 Proteus 1205 genus 1 583 3 species 585 1 0 Proteus vulgaris 404 0 795 Proteus mirabilis species 584 1 4 29487 1 genus 780 Photorhabdus 0 3 1 29488 species 199 Photorhabdus luminescens 0 species 574560 1 0 Photorhabdus temperata 182 species 1 291112 0 396 Photorhabdus asymbiotica no rank 14 118884 0 3786 clade 4 32036 0 1294 2 0 430 Candidatus Ruthia 1 genus 1541743 2 0 428 Candidatus Ruthia magnifica species 386487 1 Calyptogena okutanii thioautotrophic gill symbiont 530 0 1 410330 species 1 113267 species Bathymodiolus septemdierum thioautotrophic gill symbiont 334 0 0 648 clade 198346 1 0 648 Candidatus Baumannia cicadellinicola species 186490 1 0 3 Sedimenticola 230 genus 1 2 349742 1 1543721 species 227 Sedimenticola thiotaurini 0 2 0 Thiolapillus 166 genus 1 2 1608298 1076588 1 species 164 Thiolapillus brandeum 0 2 1524249 genus 1 Pseudohongiella 198 0 1 1249552 1 species Pseudohongiella spirulinae 197 0 5 0 Candidatus Thioglobus 1250 genus 1 655184 3 1705394 1 species 424 Candidatus Thioglobus autotrophicus 0 0 821 Candidatus Thioglobus singularis species 1427364 1 0 360 no rank 2 33811 1 1248727 species 141 endosymbiont of unidentified scaly snail isolate Monju 0 0 219 gamma proteobacterium HdN1 species 83406 1 order 1 12 135618 7 0 Methylococcales 1431 1424 Methylococcaceae 0 7 11 403 1 family 1 0 Methylococcus 97 genus 1 413 2 0 Methylococcus capsulatus 96 species 414 1 25 0 Methylomonas 819 genus 1 416 5 0 Methylomonas denitrificans 403 species 1538553 1 0 Methylomonas koyamae 108 species 1 702114 0 132 Methylomonas methanica species 421 1 151 0 2608980 1 no rank Methylomonas sp. DH-1 151 0 1 1727196 species 358 0 39773 1 genus Methylomicrobium alcaliphilum 358 0 271065 1 species 3 0 Methylovulum 143 genus 1 762296 2 species 1704499 1 0 Methylovulum psychrotolerans 140 29058 Alteromonadales 0 83 102 135622 1 order family 1 4 267894 1 0 Psychromonadaceae 1129 1 genus 3 67572 3 0 1128 Psychromonas no rank 2614957 1 0 565 species 1 314282 0 Psychromonas sp. CNPT3 565 357794 1 species 560 Psychromonas ingrahamii 0 Moritellaceae 505 0 5 3 267891 family 1 1 0 500 Moritella 1 genus 58050 2 0 499 Moritella viscosa species 80854 1 0 530 family 5 267893 1 genus 135575 5 7 0 530 Idiomarina 223 0 2 2614829 no rank 1 2055892 species Idiomarina sp. X4 97 0 0 Idiomarina sp. OT37-5b 126 species 2100422 1 0 Idiomarina loihiensis 184 species 135577 1 1 1096243 species Idiomarina piscisalsi 116 0 3473 Colwelliaceae 7 0 8 267889 1 family 19 0 Colwellia 3060 genus 1 28228 6 587 Colwellia beringensis 0 1967665 1 species 1862 0 3 196834 no rank 1 58049 species Colwellia sp. MT41 600 0 Colwellia sp. PAMC 20917 513 0 1816218 1 species species 1816219 1 0 749 Colwellia sp. PAMC 21821 0 Colwellia psychrerythraea 592 species 28229 1 1 1518149 genus 406 0 species 1 1763536 0 406 Thalassotalea crassostreae 8344 Pseudoalteromonadaceae 0 2 267888 25 1 family 53246 24 genus 1 Pseudoalteromonas 8342 0 140 0 Pseudoalteromonas arctica 338 species 1 394751 species 1 267375 0 238 Pseudoalteromonas marina 0 Pseudoalteromonas piratica 278 species 1348114 1 Pseudoalteromonas phenolica 305 0 1 161398 species species 28107 1 0 251 Pseudoalteromonas espejiana 247523 1 species 333 Pseudoalteromonas aliena 0 226 Pseudoalteromonas issachenkonii 0 1 152297 species 0 184 Pseudoalteromonas piscicida species 1 43662 166935 1 species Pseudoalteromonas translucida 336 0 0 2903 no rank 194690 5 Pseudoalteromonas sp. 1_2015MBL_MicDiv 338 0 1 1720343 species 0 257 Pseudoalteromonas sp. 13-15 species 1 1761891 283699 1 species Pseudoalteromonas sp. Bsw20308 276 0 species 1 1514074 0 Pseudoalteromonas sp. NC201 1750 Pseudoalteromonas sp. SM9913 282 0 234831 1 species 305 Pseudoalteromonas luteoviolacea 0 1 43657 species 176102 1 species 236 Pseudoalteromonas agarivorans 0 species 314281 1 0 452 Pseudoalteromonas tunicata species 1 298657 0 Pseudoalteromonas spongiae 365 species 1 288 0 Pseudoalteromonas atlantica 468 species 1 28109 0 Pseudoalteromonas nigrifaciens 287 0 Pseudoalteromonas rubra 175 species 1 43658 43659 1 species Pseudoalteromonas tetraodonis 217 0 species 1 228 0 305 Pseudoalteromonas haloplanktis family 1 25 267890 0 9 Shewanellaceae 8882 24 22 genus 1 Shewanella 8873 77 0 species 1 60961 0 Shewanella woodyi 563 species 1 260364 0 Shewanella marisflavi 113 no rank 6 196818 0 998 104 Shewanella sp. MR-4 0 1 60480 species species 1 2059264 0 Shewanella sp. Pdp11 238 Shewanella sp. W3-18-1 172 0 351745 1 species 0 170 Shewanella sp. MR-7 species 1 60481 0 Shewanella sp. WE21 148 species 2029986 1 species 94122 1 0 166 Shewanella sp. ANA-3 60478 1 species Shewanella amazonensis 89 0 Shewanella sediminis 374 0 271097 1 species 0 Shewanella psychrophila 734 species 225848 1 species 70864 1 0 Shewanella pealeana 185 Shewanella denitrificans 288 0 192073 1 species 2018305 1 species Shewanella bicestrii 139 0 Shewanella oneidensis 131 0 70863 1 species species 1 359303 0 Shewanella loihica 91 0 457 Shewanella japonica species 93973 1 Shewanella piezotolerans 228 0 404011 1 species 0 Shewanella violacea 994 species 1 60217 786 Shewanella baltica 0 1 62322 species Shewanella putrefaciens 167 0 24 1 species species 1 271098 0 Shewanella halifaxensis 2014 0 445 Shewanella frigidimarina species 56812 1 8 0 Alteromonadaceae 6012 family 1 72275 28 89404 3 genus 1 Glaciecola 593 2 0 294 Glaciecola nitratireducens 0 300231 1 species 297 0 1 2618684 no rank species 1 983545 0 297 Glaciecola sp. 4H-3-7+YE-5 25 0 Marinobacter 1302 genus 1 10 2742 1420917 1 species 146 Marinobacter salarius 0 species 1 1420916 0 107 Marinobacter similis 0 164 Marinobacter psychrophilus species 1 330734 species 1 1874317 0 133 Marinobacter salinus 2743 1 species 182 Marinobacter hydrocarbonoclasticus 0 0 441 no rank 83889 3 157 Marinobacter sp. BSs20148 0 1 490759 species 1 1749259 species 163 Marinobacter sp. LQ44 0 121 Marinobacter sp. CP1 0 1671721 1 species 1 1033846 species 104 Marinobacter adhaerens 0 36 0 2960 Alteromonas 1 genus 226 10 1 715451 species 244 Alteromonas naphthalenivorans 0 Alteromonas stellipolaris 267 0 1 233316 species 3 2614992 no rank 616 0 1917158 1 species 225 Alteromonas sp. RW2A1 0 0 192 Alteromonas sp. Mac1 species 1 1777491 species 2058133 1 0 Alteromonas sp. MB-3u-76 199 236 Alteromonas australica 0 589873 1 species species 1 28108 0 659 Alteromonas macleodii 284 Alteromonas addita 0 287094 1 species 618 Alteromonas mediterranea 0 314275 1 species 0 246 genus 1751872 1 species 1526571 1 0 246 Lacimicrobium alkaliphilum genus 261825 1 0 190 680279 1 species 190 Agarivorans gilvus 0 genus 1 1621534 2 0 3 Paraglaciecola 713 0 710 Paraglaciecola psychrophila species 326544 1 3 267892 family 1 Ferrimonadaceae 100 2 0 1 0 98 Ferrimonas 1 genus 2 44011 97 Ferrimonas balearica 0 1 44012 species 135614 52 order 1 Xanthomonadales 17380 0 82 16166 Xanthomonadaceae 103 0 37 32033 1 family 2546 Lysobacter 13 0 68 5 1 genus Lysobacter antibioticus 1096 0 1 84531 species 0 Lysobacter capsici 819 species 1 435897 396 Lysobacter gummosus 0 1 262324 species Lysobacter enzymogenes 222 0 69 1 species 0 1446 genus 2370 1 species 1 2371 0 Xylella fastidiosa 1446 83618 3 1 genus 426 Pseudoxanthomonas 1 0 0 127 Pseudoxanthomonas spadix species 1 415229 species 314722 1 0 Pseudoxanthomonas suwonensis 298 41 0 Stenotrophomonas 3502 genus 1 9 40323 999 0 196198 4 no rank species 1827305 1 0 333 Stenotrophomonas sp. MYb57 0 108 Stenotrophomonas sp. LM091 species 1904944 1 0 Stenotrophomonas sp. KCTC 12332 318 species 1 1793721 species 1 2005046 0 Stenotrophomonas sp. WZN-1 240 128780 1 species 315 Stenotrophomonas acidaminiphila 0 1 216778 species Stenotrophomonas rhizophila 154 0 1 83617 species Stenotrophomonas nitritireducens 313 0 0 1680 species group 995085 1 species 40324 1 0 1680 Stenotrophomonas maltophilia 338 17 1 genus 8027 Xanthomonas 97 0 0 137 Xanthomonas alfalfae species 1 366650 0 386 Xanthomonas fragariae species 1 48664 species 56458 1 0 189 Xanthomonas sacchari 1 56454 species 181 Xanthomonas hortorum 0 species 347 1 0 1832 Xanthomonas oryzae species 1 56460 0 280 Xanthomonas vesicatoria 0 239 Xanthomonas euvesicatoria species 456327 1 0 192 Xanthomonas phaseoli species 1985254 1 species group 643453 2 0 1758 species 366648 1 0 289 Xanthomonas fuscans species 346 1 0 1469 Xanthomonas citri species 1 339 0 1712 Xanthomonas campestris 0 Xanthomonas translucens 535 species 1 343 0 Xanthomonas vasicola 87 species 56459 1 0 119 Xanthomonas axonopodis species 53413 1 species 29447 1 0 154 Xanthomonas albilineans 0 129 Xanthomonas perforans species 442694 1 1 83614 genus 116 0 0 116 Luteimonas sp. 100111 species 2006110 1 1775411 14 1 family 1132 Rhodanobacteraceae 16 0 genus 1 4 231454 4 0 Dyella 384 species 231455 1 0 Dyella japonica 148 species 1 445710 0 Dyella thiooxydans 130 1 1379159 species 102 Dyella jiangningensis 0 1 genus 2 323413 2 0 198 Dokdonella 1 323415 species 196 Dokdonella koreensis 0 genus 1 2233801 0 93 Xanthomonadales bacterium D13 93 0 2021234 1 species genus 1 2 75309 0 2 Rhodanobacter 215 213 Rhodanobacter denitrificans 0 1 666685 species 1 0 132 Frateuria 1 genus 70411 2 131 Frateuria aurantia 0 1 81475 species genus 1 2 242605 0 2 Luteibacter 94 species 242606 1 0 Luteibacter rhizovicinus 92 0 12 Pasteurellales 6310 order 1 135625 31 30 712 1 family 6298 Pasteurellaceae 27 0 Mannheimia 544 1 0 75984 4 genus 1 no rank 2645054 1 0 166 species 1 1432056 0 166 Mannheimia sp. USDA-ARS-USMARC-1261 0 178 Mannheimia haemolytica species 75985 1 85404 1 species Mannheimia varigena 199 0 214906 2 1 genus 341 Histophilus 0 1 731 1 species Histophilus somni 340 0 2504 Haemophilus 0 14 6 724 1 genus 1 727 species 1414 Haemophilus influenzae 0 1 2609962 no rank 203 0 species 712310 1 0 Haemophilus sp. oral taxon 036 203 species 1 730 0 594 [Haemophilus] ducreyi 1 249188 species 120 Haemophilus pittmaniae 0 729 1 species Haemophilus parainfluenzae 159 0 Pasteurella 1127 11 0 3 745 genus 1 1 754 species Pasteurella dagmatis 259 0 0 Pasteurella multocida 857 species 747 1 216 0 1 476528 genus species 1 47735 0 216 Bibersteinia trehalosi genus 1 3 416916 0 4 Aggregatibacter 416 206 Aggregatibacter actinomycetemcomitans 0 714 1 species species 1 732 0 206 Aggregatibacter aphrophilus Glaesserella 340 1 0 2094023 2 genus 1 Glaesserella parasuis 339 0 1 738 species Actinobacillus 507 0 8 713 5 genus 1 Actinobacillus equuli 130 0 718 1 species 163 Actinobacillus pleuropneumoniae 0 1 715 species 0 80 Actinobacillus succinogenes species 1 67854 0 126 Actinobacillus suis species 716 1 0 2 Basfia 98 genus 1 2 697331 species 157673 1 0 96 [Mannheimia] succiniciproducens 155493 1 genus 178 0 750 1 species Gallibacterium anatis 178 0 72274 129 order 1 Pseudomonadales 36105 111 0 1 family 42 468 0 21 14111 Moraxellaceae Moraxella 1206 11 0 475 5 genus 1 480 1 species 329 Moraxella catarrhalis 0 species 386891 1 0 Moraxella bovoculi 233 0 Moraxella osloensis 528 species 34062 1 0 105 Moraxella ovis species 29433 1 genus 1 469 25 0 111 Acinetobacter 10336 0 272 species 202950 1 272 Acinetobacter sp. ADP1 0 62977 1 strain Acinetobacter radioresistens 199 0 40216 1 species 0 338 Acinetobacter bereziniae species 106648 1 487316 1 species Acinetobacter soli 230 0 species 1 756892 0 179 Acinetobacter indicus 1 40214 species Acinetobacter johnsonii 220 0 1 1789224 species 252 Acinetobacter larvae 0 1324350 1 species Acinetobacter equi 453 0 species group 909768 5 0 4989 species 1785128 1 0 Acinetobacter lactucae 389 1 471 species 667 Acinetobacter calcoaceticus 0 0 Acinetobacter pittii 1836 species 1 48296 species 1 470 0 Acinetobacter baumannii 1658 106654 1 species 439 Acinetobacter nosocomialis 0 species 1 40215 0 Acinetobacter junii 380 species 1 29430 0 Acinetobacter haemolyticus 333 species 108981 1 0 Acinetobacter schindleri 251 1 1148157 species Acinetobacter oleivorans 361 0 0 1768 no rank 196816 7 281 Acinetobacter sp. TTH0-4 0 1 1646498 species 1407071 1 species 285 Acinetobacter sp. TGL-Y2 0 0 365 Acinetobacter sp. ACNIH1 species 1 1636603 277 Acinetobacter sp. ACNIH2 0 1758189 1 species 0 Acinetobacter sp. SWBY1 224 species 1 2079596 1608473 1 species 171 Acinetobacter sp. NCu2D-2 0 165 Acinetobacter sp. LoGeW2-3 0 1 1808001 species 497 11 genus 1 Psychrobacter 2548 0 61 1464 0 196806 6 no rank 0 Psychrobacter sp. PRwf-1 412 species 1 349106 0 Psychrobacter sp. DAB_AL43B 212 species 1028416 1 234 Psychrobacter sp. P2G3 0 1699622 1 species 1699624 1 species 237 Psychrobacter sp. P11G5 0 species 571800 1 0 213 Psychrobacter sp. G 156 Psychrobacter sp. AntiMn-1 0 1720344 1 species 229 Psychrobacter urativorans 0 1 45610 species 403 Psychrobacter alimentarius 0 1 261164 species 0 Psychrobacter arcticus 193 species 1 334543 198 Psychrobacter cryohalolentis 0 330922 1 species family 1 86 135621 0 123 Pseudomonadaceae 21883 501 0 3 351 subfamily genus 1 3 352 0 6 Azotobacter 501 species 1 354 0 161 Azotobacter vinelandii 334 Azotobacter chroococcum 0 1 353 species 414 0 Pseudomonas 21032 genus 1 80 286 0 935 species group 2 136842 296 1 species Pseudomonas fragi 199 0 1 587753 species Pseudomonas chlororaphis 736 0 species 237610 1 0 164 Pseudomonas psychrotolerans 1 1788301 species Pseudomonas versuta 111 0 136841 6 species group 2898 0 300 1 species 545 Pseudomonas mendocina 0 288 0 1232139 1 species subgroup 1149133 1 species 288 Pseudomonas furukawaii 0 332 Pseudomonas citronellolis 0 1 53408 species 1 53412 species Pseudomonas resinovorans 150 0 1 287 species 1451 Pseudomonas aeruginosa 0 species 43263 1 0 132 Pseudomonas alcaligenes 92 Pseudomonas antarctica 0 219572 1 species species 1 104087 0 Pseudomonas frederiksbergensis 304 0 2146 species group 136849 8 species 1 36746 0 94 Pseudomonas cichorii 1 46257 species Pseudomonas avellanae 108 0 Pseudomonas viridiflava 86 0 1 33069 species species 1 251701 0 306 Pseudomonas syringae group genomosp. 3 1 251695 species subgroup 1080 0 1 317 species 1080 Pseudomonas syringae 0 2 251698 species subgroup 368 0 227 Pseudomonas savastanoi 0 1 29438 species species 47877 1 0 141 Pseudomonas amygdali 1 2775504 no rank 104 0 1206777 1 species 104 Pseudomonas sp. Lz4W 0 0 3556 species group 9 136843 0 Pseudomonas trivialis 470 species 1 200450 0 Pseudomonas corrugata 106 species 1 47879 species 380021 1 0 Pseudomonas protegens 212 72 Pseudomonas orientalis 0 1 76758 species 0 Pseudomonas poae 87 species 200451 1 0 Pseudomonas azotoformans 420 species 1 47878 76761 1 species Pseudomonas veronii 89 0 0 107 Pseudomonas mandelii species 75612 1 1993 Pseudomonas fluorescens 0 1 294 species 0 111 Pseudomonas alcaliphila species 101564 1 species 1 930166 0 288 Pseudomonas brassicacearum 1853130 1 species Pseudomonas silesiensis 274 0 species 1 244566 0 64 Pseudomonas lurida Pseudomonas entomophila 100 0 312306 1 species Pseudomonas cerasi 316 0 1 1583341 species species group 136845 6 0 3216 78327 1 species 549 Pseudomonas mosselii 0 303 1 species Pseudomonas putida 1834 0 species 70775 1 0 Pseudomonas plecoglossicida 104 Pseudomonas monteilii 427 0 1 76759 species species 47885 1 0 Pseudomonas oryzihabitans 147 155 Pseudomonas fulva 0 1 47880 species 0 3939 no rank 196821 30 1 2018067 species 63 Pseudomonas sp. FDAARGOS_380 0 species 2049589 1 0 Pseudomonas sp. HLS-6 59 145 Pseudomonas sp. M30-35 0 1981174 1 species species 1 1636610 0 Pseudomonas sp. PONIH3 126 1259844 1 species 82 Pseudomonas sp. FGI182 0 1294143 1 species Pseudomonas sp. ATCC 13867 136 0 species 1 1827300 0 Pseudomonas sp. MYb193 80 Pseudomonas sp. JY-Q 98 0 1338689 1 species 1 1898684 species 132 Pseudomonas sp. LPH1 0 species 1 1534110 0 Pseudomonas sp. DR 5-09 143 Pseudomonas sp. URMO17WK12:I11 236 0 1283291 1 species 0 Pseudomonas sp. TKP 386 species 1 1415630 1 69328 species 87 Pseudomonas sp. VLB120 0 species 1 1028989 0 Pseudomonas sp. StFLB209 129 Pseudomonas sp. XWY-1 118 0 2069256 1 species 115 Pseudomonas sp. GR 6-02 0 1 1659194 species 0 Pseudomonas sp. SWI44 93 species 2083053 1 species 1 1500687 0 Pseudomonas sp. St29 121 199 Pseudomonas sp. S-6-2 0 1931241 1 species Pseudomonas sp. MRSN12121 153 0 1 1611770 species species 1856685 1 0 Pseudomonas sp. TCU-HL1 135 Pseudomonas sp. CCOS 191 122 0 1 1649877 species 0 222 Pseudomonas sp. CC6-YY-74 species 1930532 1 1 2083054 species Pseudomonas sp. LG1D9 84 0 species 2083051 1 0 Pseudomonas sp. SWI6 107 157 Pseudomonas sp. NC02 0 1 2067572 species Pseudomonas sp. Os17 122 0 1 1500686 species 0 103 Pseudomonas sp. LH1G9 species 1 2083055 69 Pseudomonas sp. UW4 0 1207075 1 species 2083052 1 species Pseudomonas sp. SWI36 117 0 136846 2 species group 1097 0 578833 1 species subgroup 966 0 Pseudomonas stutzeri 966 0 316 1 species 1 74829 species 131 Pseudomonas balearica 0 species 1 157783 0 Pseudomonas cremoricolorata 111 species 1 157782 0 Pseudomonas parafulva 288 species 1 216142 0 Pseudomonas rhizosphaerae 118 151 Pseudomonas knackmussii 0 1 65741 species 198620 1 species Pseudomonas koreensis 253 0 species 1 237609 0 86 Pseudomonas alkylphenolica 1849530 2 genus 1 Oblitimonas 227 1 0 0 Oblitimonas alkaliphila 226 species 1 1697053 6103 Chromatiales 47 0 50 135613 1 order 3 449719 family 1 Granulosicoccaceae 421 0 7 0 15 414 Granulosicoccus 1 genus 437504 2 437505 1 species 399 Granulosicoccus antarcticus 0 Chromatiaceae 3220 0 28 18 1046 family 1 13724 2 genus 1 Thiocystis 174 1 0 173 Thiocystis violascens 0 73141 1 species 1090 Thiodictyon 14 0 53392 2 1 genus 0 Candidatus Thiodictyon syntrophicum 1076 species 1 1166950 158 0 82569 1 no rank species 1978339 1 0 158 Chromatiaceae bacterium 2141T.STBD.0c.01a 154 Allochromatium 0 4 2 85072 1 genus 1049 1 species Allochromatium vinosum 150 0 153 Thioflavicoccus 0 8 156885 2 1 genus 0 Thioflavicoccus mobilis 145 species 1 80679 285 Candidatus Nitrosoglobus 4 0 2 1980513 1 genus 281 Candidatus Nitrosoglobus terrae 0 1630141 1 species 0 1 Marichromatium 186 genus 1 85076 2 Marichromatium purpuratum 185 0 1 37487 species 3 0 992 Nitrosococcus 1 genus 4 1227 0 Nitrosococcus oceani 176 species 1229 1 0 Nitrosococcus halophilus 117 species 1 133539 0 Nitrosococcus watsonii 696 species 1 473531 170 0 1 1676141 family 1676142 1 genus 170 0 species 1579979 1 0 170 Wenzhouxiangella marina no rank 451214 2 0 173 0 3 Thiohalobacter 173 genus 1 1273155 2 170 Thiohalobacter thiocyanaticus 0 1 585455 species family 1 72276 18 24 0 Ectothiorhodospiraceae 1715 Thioalkalivibrio 843 13 0 6 106633 genus 1 species 108010 1 0 138 Thioalkalivibrio paradoxus 110 Thioalkalivibrio versutus 0 106634 1 species 0 147 no rank 2621013 1 1 396595 species Thioalkalivibrio sp. K90mix 147 0 species 1 1033854 0 264 Thioalkalivibrio sulfidiphilus 171 Thioalkalivibrio nitratireducens 0 1 186931 species Acidihalobacter 253 0 1 1765964 2 genus 1 252 Acidihalobacter prosperus 0 160660 1 species Halorhodospira 122 4 0 2 85108 genus 1 species 1 1053 0 118 Halorhodospira halophila 1 0 212 Spiribacter 1 genus 1335745 3 95 Spiribacter salinus 0 1335746 1 species species 1 1335757 0 116 Spiribacter curvatus genus 1 1051 2 0 1 Ectothiorhodospira 131 0 130 no rank 1 2684909 1 1442136 species Ectothiorhodospira sp. BSL-9 130 0 3 0 Alkalilimnicola 130 genus 1 2 133193 0 127 Alkalilimnicola ehrlichii species 1 351052 1 family 3 1738654 0 2 197 Woeseiaceae 195 Woeseia 0 4 2 1738655 1 genus 1548547 1 species 191 Woeseia oceani 0 family 1 255526 4 0 2 Halothiobacillaceae 160 3 109262 1 genus 158 Halothiobacillus 5 0 species 1 927 0 Halothiobacillus neapolitanus 68 2636392 1 no rank 85 0 0 Halothiobacillus sp. LS2 85 species 1 1860122 order 1 34 72273 0 13 Thiotrichales 14321 34064 15 family 1 Francisellaceae 10493 0 6 2 0 Allofrancisella 493 genus 1 2 1869285 species 1 594679 0 Allofrancisella guangzhouensis 491 0 85 9994 Francisella 1 genus 262 12 954 1 species Francisella persica 428 0 0 571 Francisella sp. TX077310 species 1 573570 2610885 2 no rank 912 0 0 Francisella sp. MA067296 431 species 475375 1 1547445 1 species 481 Francisella sp. FSC1006 0 0 Francisella tularensis 1507 species 263 1 species 1 549298 0 Francisella halioticida 3082 species 28110 1 0 Francisella philomiragia 1139 0 Francisella hispaniensis 485 species 622488 1 573569 1 species 462 Francisella sp. TX077308 0 1 657445 species 711 Francisella noatunensis 0 0 Francisella sp. CA97-1460 612 species 1 1542390 5 135617 family 1 Thiotrichaceae 1002 0 5 Beggiatoa 445 0 3 2 1021 genus 1 Beggiatoa leptomitoformis 442 0 1 288004 species 2 40751 genus 1 Thioploca 552 2 0 40754 1 species Thioploca ingrica 550 0 2813 Piscirickettsiaceae 0 11 13 135616 1 family 460 0 40222 2 genus 204 Methylophaga frappieri 0 1 754477 species 256 Methylophaga nitratireducenticrescens 0 1 754476 species 2 933 genus 299 0 1 92245 species Thiomicrospira aerophila 160 0 0 Thiomicrospira cyclica 139 species 147268 1 1 genus 2 1237 0 2 608 Piscirickettsia species 1238 1 0 Piscirickettsia salmonis 606 194 Hydrogenovibrio 0 1 28884 2 1 genus Hydrogenovibrio crunogenus 193 0 39765 1 species 4 34067 1 genus 1241 Cycloclasticus 0 12 768 0 2621467 2 no rank Cycloclasticus sp. PY97N 371 0 728003 1 species Cycloclasticus sp. P1 397 0 1 385025 species species 1329899 1 0 Cycloclasticus zancles 461 1 order 1775403 3 4 0 136 Nevskiales 0 Sinobacteraceae 2 family 1 568386 130 0 2689614 1 family 469322 1 genus 130 0 130 Steroidobacter denitrificans 0 1 465721 species 0 937 order 1240482 4 937 0 1240483 4 family 3 0 521 Gilliamella 1 genus 2 1193503 1 1196095 species 518 Gilliamella apicola 0 1 genus 1335631 2 0 3 416 Frischella 413 Frischella perrara 0 1 1267021 species order 1 1692040 6 8 0 Acidiferrobacterales 439 Acidiferrobacteraceae 431 0 4 1692041 5 family 1 1 genus 2 1744881 1 0 134 Sulfuricaulis 1620215 1 species 133 Sulfuricaulis limicola 0 1 genus 1692042 2 0 1 293 Sulfurifustis 1675686 1 species 292 Sulfurifustis variabilis 0 172486 Alphaproteobacteria 143 0 28211 542 1 class 0 9 Pelagibacterales 83618 order 1 9 54526 Candidatus Fonsibacter 4873 0 8 2 2045213 genus 1 0 Candidatus Fonsibacter ubiquis 4865 species 1925548 1 Pelagibacteraceae 78736 0 26 1655514 6 family 1 no rank 2 1655516 0 37355 33998 alpha proteobacterium HIMB5 0 859653 1 species 744985 1 species 3357 alpha proteobacterium HIMB59 0 198251 3 1 genus 41355 Candidatus Pelagibacter 0 5 5205 0 1 2647897 no rank 0 Candidatus Pelagibacter sp. IMCC9063 5205 species 1002672 1 0 36145 Candidatus Pelagibacter ubique species 198252 1 1 order 56 766 0 17 12062 Rickettsiales 1328881 3 family 1 Candidatus Midichloriaceae 346 0 1 411566 2 genus 1 Candidatus Midichloria 345 12 0 0 Candidatus Midichloria mitochondrii 333 species 234827 1 6013 Anaplasmataceae 16 0 942 23 1 family 0 3 268 Anaplasma 1 genus 768 4 1 769 species 52 Anaplasma centrale 0 770 1 species Anaplasma marginale 78 0 species group 106179 1 0 135 species 1 948 0 135 Anaplasma phagocytophilum genus 1 4 33993 0 3 Neorickettsia 434 1 951 species 136 Neorickettsia sennetsu 0 0 Neorickettsia helminthoeca 139 species 33994 1 950 1 species 156 Neorickettsia risticii 0 tribe 8 952 0 2588 genus 1 953 8 0 40 Wolbachia 2588 no rank 7 2640676 0 2548 Wolbachia endosymbiont of Brugia malayi 403 0 1 80849 species 0 275 Wolbachia endosymbiont of Cimex lectularius species 1 246273 300 Wolbachia endosymbiont of Drosophila melanogaster 0 163164 1 species 0 305 Wolbachia endosymbiont of Onchocerca ochengi species 1 100901 0 309 Wolbachia sp. wRi species 66084 1 1 77551 species Wolbachia endosymbiont of Onchocerca volvulus 295 0 species 1 77038 0 661 Wolbachia endosymbiont of Drosophila simulans 22 0 2707 Ehrlichia 1 genus 943 6 0 2170 species group 4 106178 0 584 Ehrlichia ruminantium species 1 779 species 1 944 0 Ehrlichia canis 547 1 945 species 523 Ehrlichia chaffeensis 0 0 Ehrlichia muris 516 species 1 35795 106181 1 no rank 515 0 0 515 Ehrlichia sp. HF species 391036 1 1699067 1 no rank 869 0 Rickettsiales bacterium Ac37b 869 0 1528098 1 species Rickettsiaceae 4817 0 6 775 28 family 1 3 0 320 Candidatus Phycorickettsia 1 genus 2115980 2 1 2115978 species Candidatus Phycorickettsia trachydisci 317 0 25 33988 tribe 4491 0 genus 1 69474 2 0 1 Orientia 767 species 1 784 0 766 Orientia tsutsugamushi 3724 Rickettsia 0 337 23 780 1 genus species group 114292 2 0 855 species 785 1 0 Rickettsia typhi 425 species 782 1 0 430 Rickettsia prowazekii 765 0 1129742 2 species group 33990 1 species 480 Rickettsia bellii 0 species 1 788 0 Rickettsia canadensis 285 114277 17 species group 1331 0 Rickettsia slovaca 8 0 1 35794 species 0 51 Rickettsia heilongjiangensis species 226665 1 213 Rickettsia felis 0 42862 1 species 12 Rickettsia africae 0 1 35788 species Rickettsia conorii 19 0 781 1 species Rickettsia monacensis 158 0 1 109232 species 1 783 species 42 Rickettsia rickettsii 0 1105106 1 species Rickettsia philipii 32 0 0 187 Rickettsia akari species 786 1 0 Rickettsia parkeri 30 species 1 35792 Rickettsia montanensis 34 0 33991 1 species 1 47589 species 76 Rickettsia peacockii 0 33989 1 species Rickettsia amblyommatis 73 0 40 Rickettsia massiliae 0 35791 1 species 35790 1 species 44 Rickettsia japonica 0 80 Rickettsia rhipicephali 0 1 33992 species 787 1 species Rickettsia australis 232 0 1 114295 no rank 436 0 species 337479 1 0 436 Rickettsia endosymbiont of Bemisia tabaci order 2800059 2 0 174 2800061 2 family 174 0 174 Maricaulis 0 3 2 74317 1 genus 1 74318 species 171 Maricaulis maris 0 82117 8 no rank 2674 0 genus 1 2 213485 2 0 Micavibrio 144 species 349221 1 0 Micavibrio aeruginosavorus 142 Phreatobacter 170 5 0 1632780 2 genus 1 165 Phreatobacter sp. S-12 0 1 1868589 species 0 2147 clade 62654 2 2 767891 genus 1 Candidatus Puniceispirillum 2147 12 0 2135 Candidatus Puniceispirillum marinum 0 767892 1 species Polymorphum 213 17 0 991903 2 genus 1 Polymorphum gilvum 196 0 991904 1 species 0 859 order 2800060 6 0 9 859 Hyphomonadaceae 1 family 6 69657 3 85 1 genus 335 Hyphomonas 0 8 81032 1 species 132 Hyphomonas neptunium 0 2630699 1 no rank 195 0 1 1906738 species Hyphomonas sp. Mor2 195 0 1 genus 2723 2 0 3 515 Hirschia 1 2724 species Hirschia baltica 512 0 10 0 Caulobacterales 2164 order 1 18 204458 17 76892 1 family 2154 Caulobacteraceae 21 0 152 0 20 1 genus species 1 284016 0 152 Phenylobacterium zucineum 81440 1 no rank 119 0 species 1759059 1 0 119 Caulobacteraceae bacterium OTSz_A_272 1 76890 genus 122 0 species 1 78587 0 122 Asticcacaulis excentricus 11 0 925 Caulobacter 1 genus 75 6 0 Caulobacter vibrioides 331 species 155892 1 0 Caulobacter mirabilis 148 species 1 69666 Caulobacter henricii 122 0 69395 1 species 152 Caulobacter segnis 0 88688 1 species no rank 2648921 1 0 161 0 161 Caulobacter sp. K31 species 1 366602 41275 7 1 genus 815 Brevundimonas 29 0 species 41276 1 0 Brevundimonas vesicularis 93 0 421 no rank 3 2622653 109 Brevundimonas sp. DS20 0 1 1532555 species species 1827469 1 0 76 Brevundimonas sp. GW460-12-10-14-LB2 0 Brevundimonas sp. LM2 236 species 1 1938605 species 74313 1 0 163 Brevundimonas subvibrioides species 1 588932 0 Brevundimonas naejangsanensis 109 204441 62 1 order 10130 Rhodospirillales 0 89 0 65 Rhodospirillaceae 6126 family 1 30 41295 0 6 Thalassospira 582 genus 1 168934 3 1 220697 species 300 Thalassospira xiamenensis 0 species 2048283 1 0 Thalassospira sp. CSC3H3 276 1 genus 171436 2 3 0 253 Tistrella 171437 1 species Tistrella mobilis 250 0 Rhodospirillum 457 2 0 1081 3 genus 1 Rhodospirillum centenum 281 0 34018 1 species 174 Rhodospirillum rubrum 0 1085 1 species Azospirillum 1414 42 0 191 5 genus 1 Azospirillum brasilense 437 0 1 192 species species 1 1226968 0 109 Azospirillum humicireducens 1 193 species Azospirillum lipoferum 493 0 333 Azospirillum thiophilum 0 1 528244 species genus 1 13134 5 33 0 Magnetospirillum 1041 Magnetospirillum magneticum 271 0 1 84159 species species 1 55518 0 269 Magnetospirillum gryphiswaldense 0 468 no rank 2617991 2 species 1663591 1 0 222 Magnetospirillum sp. XM-1 Magnetospirillum sp. ME-1 246 0 1 1639348 species genus 1 1612157 0 139 0 139 Pararhodospirillum photometricum species 1084 1 1 genus 2 1543704 1 0 157 Niveispirillum Niveispirillum cyanobacteriorum 156 0 1 1612173 species Magnetospira 177 0 8 2 1182780 genus 1 0 169 no rank 1 2685734 0 169 Magnetospira sp. QH-2 species 1288970 1 1 0 1517 Candidatus Endolissoclinum 1 genus 2 1263978 1263979 1 species Candidatus Endolissoclinum faulkneri 1516 0 Haematospirillum 95 0 2 1804663 2 genus 1 1549855 1 species 93 Haematospirillum jordaniae 0 Nitrospirillum 229 0 1 1543705 2 genus 1 species 1 28077 0 228 Nitrospirillum amazonense 433 31 1 family 3915 Acetobacteraceae 0 17 0 125 genus 1 153497 Kozakia baliensis 125 0 1 153496 species Gluconacetobacter 154 0 1 2 89583 genus 1 1 33996 species 153 Gluconacetobacter diazotrophicus 0 291 Acidiphilium 7 0 522 3 1 genus 62140 1 species Acidiphilium multivorum 144 0 species 1 524 0 Acidiphilium cryptum 140 2 91914 1 genus 112 Asaia 0 1 1 91915 species Asaia bogorensis 111 0 0 77 genus 1602345 1 77 Parasaccharibacter apium 0 1 1510841 species genus 1 1434011 5 0 12 Komagataeibacter 565 0 55 Komagataeibacter europaeus species 1 33995 Komagataeibacter xylinus 199 0 28448 1 species 0 Komagataeibacter medellinensis 148 species 1 1177712 265960 1 species Komagataeibacter nataicola 151 0 1 genus 434 8 0 8 1524 Acetobacter species 1 1076596 0 149 Acetobacter persici 1 438 species 665 Acetobacter pasteurianus 0 Acetobacter tropicalis 205 0 1 104102 species 1 65959 species Acetobacter pomorum 133 0 subgenus 1 151157 0 85 species 435 1 0 85 Acetobacter aceti 0 Acetobacter senegalensis 132 species 1 446692 Acetobacter oryzifermentans 147 0 1 1633874 species 301 0 364409 1 genus 0 Granulibacter bethesdensis 301 species 1 364410 0 86 genus 320496 1 species 320497 1 0 Neoasaia chiangmaiensis 86 Roseomonas 419 7 0 3 125216 genus 1 206 Roseomonas gilardii 0 1 257708 species 2617492 1 no rank 206 0 species 2018065 1 0 206 Roseomonas sp. FDAARGOS_362 441 3 1 genus 244 Gluconobacter 0 3 species 1 318683 0 93 Gluconobacter albidus 0 Gluconobacter oxydans 148 species 1 442 1 order 356 204 0 213 34284 Rhizobiales 1 family 20 69277 0 7 2741 Phyllobacteriaceae genus 1 274591 2 4 0 Hoeflea 182 178 0 1 2614931 no rank 0 Hoeflea sp. IMCC20628 178 species 1620421 1 genus 1 2 245876 3 0 Nitratireductor 136 133 Nitratireductor basaltis 0 472175 1 species 2014 Mesorhizobium 57 0 68287 9 1 genus 1 593909 species Mesorhizobium opportunistum 243 0 species 1670800 1 0 Mesorhizobium sp. B7 227 0 181 Mesorhizobium amorphae species 71433 1 381 1 species 213 Mesorhizobium loti 0 325217 1 no rank 342 0 Mesorhizobium sp. WSM1497 342 0 278153 1 species 0 333 Mesorhizobium ciceri species 39645 1 1 536018 species Mesorhizobium australicum 196 0 Mesorhizobium japonicum 222 0 1 2066070 species 0 1 Aminobacter 169 genus 1 2 31988 Aminobacter aminovorans 168 0 83263 1 species genus 1 2 28100 0 2 Phyllobacterium 127 species 1 1867719 0 125 Phyllobacterium zundukense 449972 2 genus 1 Chelativorans 106 0 14 2643807 1 no rank 92 0 Chelativorans sp. BNC1 92 0 266779 1 species no rank 119042 6 0 546 0 2 172 Pseudorhodoplanes 1 genus 1734920 2 170 Pseudorhodoplanes sinuspersici 0 1235591 1 species 137 Methyloceanibacter 0 11 2 1484898 1 genus species 1384459 1 0 126 Methyloceanibacter caenitepidi Hartmannibacter 237 0 3 2 1572860 genus 1 1 1482074 species 234 Hartmannibacter diazotrophicus 0 1 family 82115 51 41 0 9656 Rhizobiaceae genus 1 2 323620 0 1 Shinella 219 0 218 no rank 1 2643062 Shinella sp. HZN7 218 0 1 879274 species 34019 6 1 genus 2027 Liberibacter 0 29 34020 1 species Candidatus Liberibacter africanus 404 0 1273132 1 species 492 Liberibacter crescens 0 species 1 556287 0 Candidatus Liberibacter solanacearum 316 1 309868 species 455 Candidatus Liberibacter americanus 0 1 34021 species 331 Candidatus Liberibacter asiaticus 0 no rank 10 227292 0 1984 Sinorhizobium 1725 19 0 7 28105 genus 1 500 Sinorhizobium meliloti 0 1 382 species 0 348 no rank 2613772 2 174 Sinorhizobium sp. CCBAU 05631 0 1 794846 species 174 Sinorhizobium sp. RAC02 0 1 1842534 species 0 535 species group 1 663276 1 380 species Sinorhizobium fredii 535 0 194963 1 species Sinorhizobium americanum 158 0 110321 1 species Sinorhizobium medicae 165 0 259 Ensifer 0 4 106591 3 1 genus 0 Ensifer sojae 119 species 716925 1 0 Ensifer adhaerens 136 species 1 106592 5385 0 32 227290 no rank 3682 Rhizobium 192 0 379 23 1 genus 0 866 Rhizobium leguminosarum species 1 384 species 1 398 0 106 Rhizobium tropici species 1 29449 0 421 Rhizobium etli Rhizobium phaseoli 419 0 396 1 species 56730 1 species Rhizobium gallicum 205 0 no rank 17 2613769 0 1473 2048897 1 species 147 Rhizobium sp. NXC24 0 0 108 Rhizobium sp. ACO-34A species 1 1571470 species 1 2028343 0 133 Rhizobium sp. 10195 0 Rhizobium sp. NT-26 114 species 1125847 1 1 1703969 species 139 Rhizobium sp. N324 0 1703965 1 species Rhizobium sp. N6212 2 0 species 1 1981173 0 90 Rhizobium sp. NXC14 species 424182 1 0 119 Rhizobium sp. IRBG74 species 1 1703964 0 Rhizobium sp. N621 2 species 1 1301032 0 90 Rhizobium sp. IE4771 species 1 2020313 0 46 Rhizobium sp. TAL182 species 1 1703961 0 Rhizobium sp. N1314 34 Rhizobium sp. N731 34 0 1703966 1 species Rhizobium sp. CIAT894 109 0 1 2020312 species species 1 1914541 0 92 Rhizobium sp. Y9 0 Rhizobium sp. S41 105 species 1 1869170 species 2020311 1 0 Rhizobium sp. Kim5 109 1531 Agrobacterium 0 14 7 357 1 genus 1183400 2 species group 930 0 1 1176649 species 121 Agrobacterium fabrum 0 0 Agrobacterium tumefaciens 809 species 1 358 359 1 species 114 Agrobacterium rhizogenes 0 no rank 2 2632611 0 327 861208 1 species Agrobacterium sp. H13-3 112 0 1842536 1 species 215 Agrobacterium sp. RAC06 0 0 Agrobacterium vitis 146 species 373 1 172 Neorhizobium 1 0 2 1525371 1 genus Neorhizobium galegae 171 0 399 1 species 0 14 Methylobacteriaceae 3069 family 1 15 119045 0 1379 genus 2282523 3 0 145 Methylobacterium zatmanii species 1 29429 species 223967 1 0 281 Methylobacterium populi species 408 1 0 953 Methylobacterium extorquens 2 186650 1 genus 137 Microvirga 3 0 species 1882682 1 0 134 Microvirga ossetica 407 9 genus 1 Methylobacterium 1539 0 44 1 270351 species Methylobacterium aquaticum 206 0 0 Methylobacterium radiotolerans 203 species 31998 1 588 0 3 2615210 no rank 158 Methylobacterium sp. AMS5 0 925818 1 species Methylobacterium sp. 4-46 255 0 1 426117 species species 1 1479019 0 175 Methylobacterium sp. C1 species 1 114616 0 Methylobacterium nodulans 229 Methylobacterium phyllosphaerae 132 0 1 418223 species 1 334852 species 137 Methylobacterium oryzae 0 354 Beijerinckiaceae 2 0 3 45404 1 family 237 0 532 1 genus 237 Beijerinckia indica 0 1 533 species 115 0 120652 1 genus Methylocella silvestris 115 0 199596 1 species 1896 Hyphomicrobiaceae 12 0 19 45401 1 family 1 genus 2 119044 5 0 111 Filomicrobium species 1 1608628 0 Candidatus Filomicrobium marinum 106 694 Hyphomicrobium 0 16 81 4 1 genus 0 415 no rank 1 2619925 species 717785 1 0 415 Hyphomicrobium sp. MC1 Hyphomicrobium denitrificans 156 0 1 53399 species 0 107 Hyphomicrobium nitrativorans species 1427356 1 genus 1 4 46913 0 12 Devosia 522 510 0 3 196773 no rank 223 Devosia sp. A16 0 1736675 1 species 0 104 Devosia sp. I507 species 2083786 1 1 1643450 species 183 Devosia sp. H5989 0 2 1068 genus 1 Rhodomicrobium 82 0 1 1069 1 species Rhodomicrobium vannielii 81 0 4 0 Blastochloris 168 genus 1 59282 2 1 1079 species Blastochloris viridis 164 0 genus 1 2 1082930 5 0 Pelagibacterium 117 0 Pelagibacterium halotolerans 112 species 531813 1 2 29407 genus 1 Rhodoplanes 190 0 4 1 2619116 no rank 186 0 186 Rhodoplanes sp. Z2-YC6860 0 674703 1 species family 1 119043 3 1 0 Rhodobiaceae 231 0 9 230 Parvibaculum 1 genus 256616 2 221 Parvibaculum lavamentivorans 0 256618 1 species 535 Xanthobacteraceae 0 5 6 335928 1 family 0 170 genus 1 152053 Starkeya novella 170 0 1 921 species 1 genus 2 279 2 0 213 Xanthobacter 280 1 species Xanthobacter autotrophicus 211 0 2 6 1 genus 147 Azorhizobium 4 0 1 7 species Azorhizobium caulinodans 143 0 0 2 Methylocystaceae 507 family 1 31993 5 0 14 Methylocystis 289 genus 1 3 133 2625913 1 no rank 122 0 0 122 Methylocystis sp. SC2 species 1 187303 1 655015 species 153 Methylocystis bryophila 0 425 1 genus 216 0 Methylosinus trichosporium 216 0 426 1 species 1 family 255475 7 0 1 688 Aurantimonadaceae Martelella 535 0 11 4 293088 genus 1 species 293089 1 0 196 Martelella mediterranea 1486262 1 species Martelella endophytica 103 0 no rank 1 2629616 0 225 species 686597 1 0 Martelella sp. AD-3 225 0 2 Aureimonas 152 genus 1 2 414371 no rank 2615206 1 0 150 1 1349819 species Aureimonas sp. AU20 150 0 41294 26 1 family 4836 Bradyrhizobiaceae 33 0 1 genus 1073 2 0 11 1133 Rhodopseudomonas 1 1076 species 1122 Rhodopseudomonas palustris 0 85413 5 genus 1 Bosea 685 13 0 2653178 3 no rank 474 0 188 Bosea sp. RAC05 0 1842539 1 species 0 149 Bosea sp. AS-1 species 2015316 1 137 Bosea sp. PAMC 26642 0 1 1792307 species species 1 1526658 0 Bosea vaviloviae 198 Nitrobacter 280 0 6 3 911 genus 1 0 Nitrobacter hamburgensis 162 species 912 1 species 913 1 0 Nitrobacter winogradskyi 112 0 1 128 Oligotropha 1 genus 2 40136 0 Oligotropha carboxidovorans 127 species 1 40137 374 11 1 genus 2424 Bradyrhizobium 48 0 1 44255 species 208 Bradyrhizobium oligotrophicum 0 2631580 6 no rank 1352 0 1223566 1 species Bradyrhizobium sp. CCGE-LA001 171 0 227 Bradyrhizobium sp. BTAi1 0 1 288000 species species 1 114615 0 272 Bradyrhizobium sp. ORS 278 0 Bradyrhizobium sp. ORS 285 201 species 115808 1 species 376 1 0 Bradyrhizobium sp. 258 2057741 1 species 223 Bradyrhizobium sp. SK17 0 species 1 375 0 Bradyrhizobium japonicum 292 345 Bradyrhizobium diazoefficiens 0 1 1355477 species 0 Bradyrhizobium icense 179 species 1 1274631 1649510 2 genus 1 Variibacter 153 3 0 0 Variibacter gotjawalensis 150 species 1333996 1 2 0 338 Chelatococcaceae 1 family 4 2036754 13 0 336 Chelatococcus 1 genus 28209 3 0 187 no rank 2638111 1 1 1702325 species 187 Chelatococcus sp. CO-6 0 0 136 Chelatococcus daeguensis species 1 444444 1525 Brucellaceae 0 7 118882 20 1 family 0 146 Brucella 566 genus 1 234 14 127 0 2632610 4 no rank 39 Brucella sp. 141012304 0 1 1885919 species Brucella sp. 09RB8471 37 0 1149952 1 species 0 13 Brucella sp. 2002734562 species 1891098 1 0 Brucella sp. 09RB8910 38 species 1 1844051 Brucella abortus 32 0 1 235 species 0 Brucella ovis 10 species 1 236 species 1 120577 0 Brucella ceti 22 0 42 Brucella vulpis species 981386 1 1 444163 species Brucella microti 28 0 36855 1 species Brucella canis 29 0 Brucella suis 90 0 1 29461 species 26 Brucella pinnipedialis 0 1 120576 species species 29459 1 0 14 Brucella melitensis 12 0 Ochrobactrum 952 genus 1 528 5 529 1 species Ochrobactrum anthropi 136 0 1 419475 species 245 Ochrobactrum pseudogrignonense 0 species 1 271865 0 Ochrobactrum sp. A44 152 0 Ochrobactrum pituitosum 407 species 571256 1 0 6 Bartonellaceae 7149 family 1 18 772 773 17 1 genus 7143 Bartonella 0 103 species 1 33045 0 375 Bartonella grahamii 0 Bartonella ancashensis 438 species 1 1318743 0 Bartonella clarridgeiae 457 species 56426 1 Bartonella tribocorum 427 0 1 85701 species 1 38323 species 432 Bartonella henselae 0 species 1 33047 0 Bartonella vinsonii 443 1 1686310 species 390 Bartonella apis 0 species 388640 1 0 215 Bartonella australis 0 2998 no rank 2645622 6 Bartonella sp. JB63 474 0 1933907 1 species 1 1933912 species Bartonella sp. Raccoon60 489 0 1 1933910 species Bartonella sp. A1379B 482 0 475 Bartonella sp. JB15 0 1 1933906 species Bartonella sp. WD16.2 530 0 1933904 1 species 548 Bartonella sp. 1-1C 0 1 515256 species 0 502 Bartonella bacilliformis species 1 774 1 803 species 363 Bartonella quintana 0 150 0 1 1191478 order 0 150 family 1 1191479 162171 1 genus 150 0 species 1124597 1 0 Magnetococcus marinus 150 order 1 204457 80 52 0 Sphingomonadales 9901 57 41297 family 1 Sphingomonadaceae 7842 42 0 0 60 Sphingomonas 3005 genus 1 15 13687 1560345 1 species Sphingomonas panacis 136 0 1612 0 6 196159 no rank 745310 1 species 136 Sphingomonas sp. MM-1 0 Sphingomonas sp. NIC1 94 0 1961362 1 species 1027 Sphingomonas sp. LK11 0 1390395 1 species species 1 1327635 0 112 Sphingomonas sp. Cra20 0 Sphingomonas sp. KC8 135 species 1030157 1 1938607 1 species Sphingomonas sp. LM7 108 0 1 1549858 species 131 Sphingomonas taxi 0 0 Sphingomonas melonis 120 species 1 152682 species 1609977 1 0 121 Sphingomonas hengshuiensis 141 Sphingomonas koreensis 0 1 93064 species 397260 1 species 297 Sphingomonas sanxanigenens 0 160791 2 1 species 387 Sphingomonas wittichii 0 198 0 189 Sphingomonas sp. DC-6 strain 1 1283312 0 1 164 Blastomonas 1 genus 150203 2 1 2626550 no rank 163 0 1 1842535 species 163 Blastomonas sp. RAC04 0 1 genus 10 165697 36 0 1242 Sphingopyxis 1 117207 species Sphingopyxis alaskensis 75 0 Sphingopyxis terrae 102 0 33052 1 species 2614943 4 no rank 587 0 1 1913578 species Sphingopyxis sp. LPB0140 229 0 1 292913 species 86 Sphingopyxis sp. 113P3 0 164 Sphingopyxis sp. QXT-31 0 1357916 1 species 0 108 Sphingopyxis sp. MG species 1 1866325 215 Sphingopyxis macrogoltabida 0 33050 1 species 0 Sphingopyxis fribergensis 108 species 1515612 1 Sphingopyxis granuli 119 0 267128 1 species Novosphingobium 549 25 0 165696 5 genus 1 1 205844 species Novosphingobium pentaromativorans 112 0 0 149 Novosphingobium resinovorum species 158500 1 no rank 2644732 1 0 166 0 Novosphingobium sp. PP1Y 166 species 1 702113 0 97 Novosphingobium aromaticivorans species 1 48935 2685927 1 genus 99 0 1921510 1 species Sphingomonas sp. JJ-A5 99 0 Sphingobium 1667 57 0 165695 15 genus 1 0 99 Sphingobium cloacae species 120107 1 1 1332080 species 123 Sphingobium baderi 0 species 13690 1 0 246 Sphingobium yanoikuyae Sphingobium hydrophobicum 108 0 1673076 1 species 0 Sphingobium herbicidovorans 66 species 76947 1 332055 1 species Sphingobium indicum 113 0 1 332056 species 104 Sphingobium japonicum 0 0 649 no rank 6 2611147 species 1 484429 0 122 Sphingobium sp. YBL2 80 Sphingobium sp. EP60837 0 1 1855519 species species 1 407020 0 86 Sphingobium sp. MI1205 species 1 627192 0 119 Sphingobium sp. SYK-6 0 116 Sphingobium sp. TKS species 1315974 1 1 1843368 species Sphingobium sp. RAC03 126 0 46429 1 species 102 Sphingobium chlorophenolicum 0 0 6 303 Sphingorhabdus 1 genus 1434046 3 2 2614947 no rank 297 0 156 Sphingorhabdus sp. YGSMI21 0 2077182 1 species 0 141 Sphingorhabdus sp. M41 species 1 1806885 148 0 1 1649486 genus 0 148 Rhizorhabdus dicambivorans species 1850238 1 147 0 2709685 1 genus 147 Sphingorhabdus flavimaris 0 266812 1 species 2 72173 genus 1 Citromicrobium 66 0 1 65 0 2630544 1 no rank 0 65 Citromicrobium sp. JL477 species 1 1634516 410 0 1 541 genus Zymomonas mobilis 410 0 1 542 species 26 0 Erythrobacteraceae 2007 family 1 335929 22 2800681 2 genus 439 0 1 502682 species 208 Erythrobacter gangjinensis 0 231 Erythrobacter atlanticus 0 1 1648404 species 0 586 no rank 2800788 6 322 Erythrobacter 47 0 1041 3 1 genus 107 Porphyrobacter neustonensis 0 1 1112 species 0 Erythrobacter litoralis 168 species 39960 1 Porphyrobacter 264 13 0 1111 3 genus 1 0 251 no rank 2683265 2 123 Porphyrobacter HT-58-2 0 2023229 1 species species 1 1896196 0 128 Porphyrobacter sp. LM 6 68 0 2800685 1 genus 0 Altererythrobacter marensis 68 species 1 543877 genus 2 2800686 0 136 0 Altererythrobacter dongtanensis 63 species 1 692370 species 1982042 1 0 73 Altererythrobacter mangrovi 143 0 1855416 2 genus Erythrobacter flavus 71 0 192812 1 species Erythrobacter seohaensis 72 0 1 266951 species 0 124 genus 2800682 1 1 645517 species Altererythrobacter namhicola 124 0 genus 1 4 361177 0 52 Altererythrobacter 309 Altererythrobacter epoxidivorans 81 0 361183 1 species 1 476157 species 84 Altererythrobacter ishigakiensis 0 0 92 Altererythrobacter atlanticus species 1 1267766 10 0 176 Croceicoccus 1 genus 3 1295327 species 450378 1 0 104 Croceicoccus marinus 0 Croceicoccus naphthovorans 62 species 1 1348774 2 0 954 Holosporales 1 order 1921002 9 Candidatus Paracaedibacteraceae 234 2 0 1777752 3 family 1 1 genus 1521255 2 0 1 232 Candidatus Paracaedibacter 91604 1 species 231 Candidatus Paracaedibacter acanthamoebae 0 1 0 Holosporaceae 319 family 1 44746 2 0 318 no rank 204454 1 0 318 endosymbiont of Acanthamoeba sp. UWC8 species 1 86106 Caedimonadaceae 399 0 2 2100208 3 family 1 genus 1 2 1509243 1 0 Candidatus Nucleicultrix 397 396 Candidatus Nucleicultrix amoebiphila 0 1 1509244 species 1 order 255473 4 1 0 376 Parvularculales Parvularculaceae 375 0 3 3 255474 family 1 2 208215 1 genus 372 Parvularcula 0 4 0 Parvularcula bermudensis 368 species 208216 1 55 0 14997 Rhodobacterales 1 order 82 204455 family 1 31989 81 208 0 Rhodobacteraceae 14942 0 178 genus 309512 1 1 215813 species 178 Dinoroseobacter shibae 0 0 4 Rhodovulum 585 genus 1 4 34008 2 2631432 no rank 317 0 species 1564506 1 0 141 Rhodovulum sp. P5 0 Rhodovulum sp. MB263 176 species 308754 1 35806 1 species 264 Rhodovulum sulfidophilum 0 Paracoccus 1438 22 0 9 265 genus 1 1 1945662 species Paracoccus contaminans 114 0 266 1 species Paracoccus denitrificans 172 0 1 34003 species 155 Paracoccus aminophilus 0 0 Paracoccus zhejiangensis 157 species 1077935 1 0 172 Paracoccus aminovorans species 34004 1 0 185 Paracoccus sp. CBA4604 species 2065379 1 0 237 Paracoccus yeei species 147645 1 no rank 1 246570 0 224 species 1529068 1 0 Paracoccus sp. BM15 224 0 289 genus 1 1579315 289 Halocynthiibacter arcticus 0 1579316 1 species 15 0 Labrenzia 575 genus 1 4 478070 no rank 2648686 2 0 358 176 Labrenzia sp. VG12 0 2021862 1 species 0 Labrenzia sp. CP4 182 species 1674922 1 1 187304 species 202 Labrenzia aggregata 0 genus 299261 1 0 208 species 299262 1 0 208 Tateyamaria omphalii Celeribacter 1028 0 6 875170 5 genus 1 1758178 1 species Celeribacter ethanolicus 184 0 1 1397108 species 213 Celeribacter marinus 0 Celeribacter manganoxidans 313 0 1411902 1 species species 1208324 1 0 312 Celeribacter indicus Marinovum 276 2 0 367771 2 genus 1 Marinovum algicola 274 0 42444 1 species 0 224 genus 1649279 1 1 379347 species Ruegeria mobilis 224 0 1 0 191 Roseibacterium 1 genus 159345 2 Roseibacterium elongatum 190 0 1 159346 species 60136 3 1 genus 507 Sulfitobacter 6 0 species 1 1402135 0 257 Sulfitobacter pseudonitzschiae 0 244 no rank 1 196795 species 1917485 1 0 244 Sulfitobacter sp. AM1-D1 74030 1 genus 271 0 0 Roseovarius mucosus 271 species 215743 1 1 genus 1097466 2 0 1 183 Defluviimonas 182 Defluviimonas alba 0 1 1335048 species 2 0 Leisingera 285 genus 1 191028 2 283 Leisingera methylohalidivorans 0 1 133924 species 249 0 188905 1 genus no rank 2645469 1 0 249 0 Jannaschia sp. CCS1 249 species 1 290400 2 58840 no rank 289 0 0 128 Rhodobacteraceae bacterium QY30 species 1 2033435 161 Rhodobacteraceae bacterium 0 1 1904441 species Ketogulonicigenium 260 3 0 92944 3 genus 1 0 Ketogulonicigenium robustum 120 species 92947 1 92945 1 species Ketogulonicigenium vulgare 137 0 Sagittula 210 1 0 2 58842 genus 1 no rank 2624628 1 0 209 1 2009329 species 209 Sagittula sp. P11 0 1609958 1 genus 298 0 298 0 2643318 1 no rank 0 298 Confluentimicrobium sp. EMB200-NS6 species 1 1609966 285107 1 genus 109 0 109 Thioclava nitratireducens 0 1 1915078 species genus 1 4 53945 24 0 Octadecabacter 1002 0 344 Octadecabacter arcticus species 1 53946 0 196 Octadecabacter temperatus species 1458307 1 1217908 1 species Octadecabacter antarcticus 438 0 0 259 genus 1 74032 0 259 Antarctobacter heliothermus species 1 74033 2211641 1 genus 247 0 species 245188 1 0 Loktanella vestfoldensis 247 Rhodobacter 982 0 6 1060 5 genus 1 448 Rhodobacter sphaeroides 0 1063 1 species 1061 1 species 163 Rhodobacter capsulatus 0 196779 2 no rank 365 0 1 2033869 species 183 Rhodobacter sp. CZR27 0 0 Rhodobacter sp. LPB0142 182 species 1 1850250 genus 1 119541 0 267 Rhodobaca barguzinensis 267 0 441209 1 species 1284657 2 genus 1 Planktomarina 440 0 1 1284658 1 species 439 Planktomarina temperata 0 5 302485 1 genus 1866 Phaeobacter 15 0 1 221822 species Phaeobacter inhibens 837 0 0 471 Phaeobacter gallaeciensis species 1 60890 Phaeobacter porticola 163 0 1 1844006 species 380 Phaeobacter piscinae 0 1580596 1 species 1 genus 360528 2 0 1 222 Pelagibaca 0 Pelagibaca abyssi 221 species 1250539 1 1 genus 97050 3 2 0 465 Ruegeria no rank 1 2625375 0 204 204 Ruegeria sp. TM1040 0 292414 1 species Ruegeria pomeroyi 259 0 89184 1 species genus 2 263377 0 414 2640570 1 no rank 232 0 species 1792508 1 0 232 Yangia sp. CCB-MM3 Thiobacimonas profunda 182 0 1 1229727 species 2 227873 1 genus 195 Pannonibacter 2 0 Pannonibacter phragmitetus 193 0 1 121719 species genus 1 1759396 0 160 2622455 1 no rank 160 0 species 1920883 1 0 160 Marivivens sp. JLT3646 8 0 562 Roseobacter 1 genus 3 2433 species 1 2434 0 270 Roseobacter denitrificans Roseobacter litoralis 284 0 42443 1 species 0 499 class 1807140 6 225057 6 order 1 Acidithiobacillales 499 15 0 family 1 5 225058 0 10 Acidithiobacillaceae 484 0 1 474 Acidithiobacillus 1 genus 4 119977 1 33059 species 164 Acidithiobacillus caldus 0 920 1 species 141 Acidithiobacillus ferrooxidans 0 Acidithiobacillus ferrivorans 168 0 1 160808 species 39477 0 179 68525 subphylum 17772 Deltaproteobacteria 0 24 28221 110 1 class 9045 Myxococcales 100 0 32 29 1 order 3070 0 5 80812 suborder Polyangiaceae 2648 1 0 49 4 family 1 genus 50 1 0 424 0 424 Chondromyces crocatus species 52 1 39643 2 1 genus 2223 Sorangium 0 5 1 56 species Sorangium cellulosum 2218 0 0 422 family 1 1055686 1 1055688 genus 422 0 1 927083 species 422 Sandaracinus amylolyticus 0 804 0 3 224462 suborder 224464 3 family 1 Kofleriaceae 804 0 7 1 genus 162027 2 0 5 797 Haliangium species 1 80816 0 Haliangium ochraceum 792 0 5071 suborder 80811 23 31 9 1 family 2100 Myxococcaceae 9 0 681 Corallococcus 3 0 3 83461 1 genus 0 Myxococcus macrosporus 305 species 35 1 184914 1 species 373 Corallococcus coralloides 0 1 genus 5 32 0 15 1410 Myxococcus 0 Myxococcus stipitatus 318 species 83455 1 species 1 1297742 0 Myxococcus hansupus 297 Myxococcus xanthus 205 0 34 1 species species 33 1 0 575 Myxococcus fulvus 187 Vulgatibacteraceae 3 0 2 1524213 1 family genus 1 1524214 0 184 1 1391653 species 184 Vulgatibacter incomptus 0 Archangiaceae 1907 9 0 39 7 family 1 1 40 genus 247 0 0 247 Stigmatella aurantiaca species 41 1 2 0 Archangium 1061 genus 1 47 2 0 1059 Archangium gephyra species 1 48 248 Melittangium 0 1 2 44 1 genus 0 Melittangium boletus 247 species 1 83453 1 42 genus 342 0 0 Cystobacter fuscus 342 species 43 1 1 family 5 1524215 1 0 877 Anaeromyxobacteraceae 161492 4 genus 1 Anaeromyxobacter 876 13 0 161493 1 species 353 Anaeromyxobacter dehalogenans 0 2620896 2 no rank 510 0 Anaeromyxobacter sp. K 210 0 1 447217 species species 1 404589 0 300 Anaeromyxobacter sp. Fw109-5 3 213113 order 573 0 573 Desulfurellaceae 1 0 117942 3 1 family 33001 1 genus 390 0 species 33002 1 0 Desulfurella acetivorans 390 0 182 genus 84404 1 1 84405 species 182 Hippea maritima 0 69541 24 1 order 3007 Desulfuromonadales 30 0 213422 14 family 1 Geobacteraceae 2062 12 0 genus 1 2 392332 2 0 Geoalkalibacter 79 1 483547 species Geoalkalibacter subterraneus 77 0 1971 Geobacter 0 17 11 28231 1 genus 0 112 Geobacter bemidjiensis species 225194 1 0 660 Geobacter uraniireducens species 351604 1 0 89 Geobacter sulfurreducens species 35554 1 species 1203471 1 0 Geobacter daltonii 139 0 Geobacter metallireducens 304 species 1 28232 75 Geobacter anodireducens 0 1340425 1 species no rank 2 2627627 0 386 273 Geobacter sp. M18 0 443143 1 species 113 Geobacter sp. M21 0 1 443144 species species 1 313985 0 Geobacter lovleyi 97 Geobacter pickeringii 92 0 345632 1 species family 1 213421 9 0 2 Desulfuromonadaceae 915 Pelobacter 423 5 0 5 18 genus 1 97 Pelobacter carbinolicus 0 1 19 species Pelobacter acetylenicus 79 0 29542 1 species 131 Pelobacter propionicus 0 1 29543 species 0 111 no rank 2620299 1 species 1 1842532 0 Pelobacter sp. SFB93 111 1 0 490 Desulfuromonas 1 genus 3 890 species 1 1603606 0 346 Desulfuromonas soudanensis 1 2614637 no rank 143 0 species 1823759 1 0 Desulfuromonas sp. DDH964 143 order 1 213118 15 0 11 Desulfobacterales 2389 1888 Desulfobacteraceae 0 7 8 213119 1 family Desulfatibacillum 748 0 1 218207 2 genus 1 1 259354 species 747 Desulfatibacillum alkenivorans 0 0 677 genus 1 28222 1 28223 species 677 Desulfobacula toluolica 0 1 2295 genus 133 0 133 Desulfobacterium autotrophicum 0 1 2296 species 1 genus 3 896 0 1 323 Desulfococcus 181663 1 species Desulfococcus oleovorans 223 0 0 99 Desulfococcus multivorans species 1 897 1 family 6 213121 0 6 490 Desulfobulbaceae genus 1 427922 0 75 1 427923 species Desulfurivibrio alkaliphilus 75 0 genus 53318 1 0 181 species 1 65555 0 181 Desulfocapsa sulfexigens 152 Desulfotalea 1 0 2 109168 1 genus Desulfotalea psychrophila 151 0 1 84980 species 0 76 genus 1 893 76 Desulfobulbus sp. ORNL 0 1 1986146 species 7 213462 order 1 Syntrophobacterales 397 1 0 family 4 213468 0 276 86 0 1 60892 genus Desulfobacca acetoxidans 86 0 60893 1 species 0 131 genus 2357 1 species 2358 1 0 Desulfomonile tiedjei 131 43773 2 genus 1 Syntrophus 59 0 2 316277 1 species 57 Syntrophus aciditrophicus 0 2 213465 family 120 0 29526 2 1 genus 120 Syntrophobacter 0 1 species 119484 1 0 119 Syntrophobacter fumaroxidans 2211 Desulfovibrionales 22 0 213115 24 1 order family 1 213116 4 0 1 Desulfomicrobiaceae 179 898 3 1 genus 178 Desulfomicrobium 0 1 59 Desulfomicrobium orale 0 132132 1 species 0 118 Desulfomicrobium baculatum species 1 899 194924 17 family 1 Desulfovibrionaceae 1954 3 0 genus 1 41707 0 427 29546 1 species Lawsonia intracellularis 427 0 0 6 1045 Desulfovibrio 1 genus 9 872 0 37 Candidatus Desulfovibrio trichonymphae species 1 1725232 1 44742 species 56 Desulfovibrio fairfieldensis 0 901 1 species Desulfovibrio piger 50 0 0 261 Desulfovibrio magneticus species 184917 1 Desulfovibrio vulgaris 351 0 1 881 species Desulfovibrio desulfuricans 146 0 1 876 species 1 58180 species Desulfovibrio alaskensis 79 0 0 59 no rank 2593640 1 0 59 Desulfovibrio sp. G11 species 1 631220 0 5 295 Pseudodesulfovibrio 1 genus 2035811 4 92 Pseudodesulfovibrio profundus 0 57320 1 species 0 102 Pseudodesulfovibrio indicus species 1 1716143 96 Pseudodesulfovibrio aespoeensis 0 182210 1 species 2582840 1 genus 95 0 species 1 873 0 Desulfovibrio africanus 95 2794998 1 genus 89 0 89 Desulfovibrio salexigens 0 1 880 species 0 1 Desulfohalobiaceae 56 family 1 213117 2 1 45662 genus 55 0 0 55 Desulfohalobium retbaense species 45663 1 0 1 Desulfarculales 126 order 1 4 453227 453228 3 1 family 125 Desulfarculaceae 5 0 2 453229 1 genus 120 Desulfarculus 0 2 1 453230 species Desulfarculus baarsii 118 0 69 29547 1 class 21705 Epsilonproteobacteria 0 9 order 1 63 213849 0 48 Campylobacterales 20859 72294 41 family 1 Campylobacteraceae 16213 0 20 57665 9 genus 1 Sulfurospirillum 1290 20 0 0 Sulfurospirillum cavolei 75 species 366522 1 0 129 Sulfurospirillum multivorans species 66821 1 0 Sulfurospirillum halorespirans 119 species 1 194424 0 578 no rank 2618290 3 0 Sulfurospirillum sp. UCH001 221 species 1 1581011 species 1 220622 0 155 Sulfurospirillum sp. JPD-1 species 1986224 1 0 Sulfurospirillum sp. SL2-1 202 Sulfurospirillum deleyianum 189 0 1 65553 species 44674 1 species Sulfurospirillum barnesii 180 0 2321108 5 no rank 4393 0 0 1132 no rank 1 2321207 0 Arcobacter sp. L 1132 species 944547 1 genus 1 2321187 0 1079 1850254 1 species Arcobacter sp. LPB0137 1079 0 18 0 2182 Arcobacter 1 genus 28196 3 28199 1 species Arcobacter nitrofigilis 867 0 1 28197 species Arcobacter butzleri 1297 0 75 0 Campylobacter 10510 genus 1 194 26 0 Campylobacter helveticus 198 species 28898 1 260714 1 species Campylobacter insulaenigrae 572 0 0 1157 Campylobacter lari species 1 201 0 43 Campylobacter gracilis species 824 1 195 1 species Campylobacter coli 733 0 Campylobacter lanienae 186 0 75658 1 species species 1 1965231 0 Campylobacter pinnipediorum 580 0 501 Campylobacter ureolyticus species 827 1 1 1031542 species 490 Campylobacter volucris 0 0 Campylobacter jejuni 923 species 197 1 species 1 206 0 Campylobacter sputorum 750 0 Campylobacter subantarcticus 420 species 1 497724 1 488546 species 411 Campylobacter peloridis 0 0 354 Campylobacter cuniculorum species 374106 1 0 Campylobacter fetus 407 species 1 196 0 290 Campylobacter avium species 522485 1 76517 1 species Campylobacter hominis 250 0 0 1350 no rank 4 2593542 1660074 1 species Campylobacter sp. RM8964 335 0 species 1 1660076 0 Campylobacter sp. RM12175 309 Campylobacter sp. RM6137 229 0 1 1660073 species Campylobacter sp. RM16704 477 0 1500960 1 species 230 Campylobacter iguaniorum 0 1 1244531 species 1 198 species 281 Campylobacter hyointestinalis 0 251 Campylobacter concisus 0 1 199 species 0 58 Campylobacter curvus species 200 1 family 2771471 4 0 723 3 202746 genus 1 Sulfurimonas 668 0 4 0 Sulfurimonas denitrificans 414 species 1 39766 0 250 Sulfurimonas autotrophica species 202747 1 55 0 286130 1 genus 0 Sulfuricurvum kujiense 55 species 148813 1 452 0 2771472 3 family 0 238 genus 265570 2 1 2646778 no rank 130 0 species 387093 1 0 130 Sulfurovum sp. NBC37-1 1 206403 species 108 Sulfurovum lithotrophicum 0 0 214 genus 269260 1 0 Nitratifractor salsuginis 214 species 1 269261 family 1 14 72293 1 0 Helicobacteraceae 3423 genus 1 843 0 62 1 844 species 62 Wolinella succinogenes 0 0 7 3360 Helicobacter 1 genus 209 12 118 Helicobacter typhlonius 0 76936 1 species species 1 212 0 Helicobacter acinonychis 115 211 Helicobacter hepaticus 0 1 32025 species 0 Helicobacter felis 60 species 1 214 0 Helicobacter himalayensis 115 species 1 1591088 0 Helicobacter cetorum 319 species 1 138563 0 Helicobacter mustelae 93 species 1 217 species 213 1 0 120 Helicobacter cinaedi 0 Helicobacter bilis 151 species 1 37372 86 0 1 2593540 no rank 0 86 Helicobacter sp. MIT 01-6242 species 1 222136 species 1 210 0 Helicobacter pylori 1965 5 235899 1 order 837 Nautiliales 0 1 0 688 family 224467 2 2 191291 1 genus 688 Nautilia 1 0 1 244787 species Nautilia profundicola 687 0 148 0 2795691 2 family 1 0 Nitratiruptor 148 genus 1 269258 2 0 147 no rank 1 2624044 species 387092 1 0 Nitratiruptor sp. SB155-2 147 70783 Betaproteobacteria 0 63 338 28216 1 class 0 10 Rhodocyclales 1969 order 1 206389 21 5 75787 family 1 Rhodocyclaceae 419 2 0 0 151 genus 1 146937 0 151 Azospira oryzae species 146939 1 102 0 1 75788 no rank 1898103 1 species Rhodocyclaceae bacterium 102 0 2 0 164 Aromatoleum 1 genus 2 551759 Aromatoleum aromaticum 162 0 551760 1 species family 1 12 2008794 0 24 Zoogloeaceae 1386 12960 5 1 genus 649 Azoarcus 15 0 0 339 no rank 2629479 2 species 748247 1 0 140 Azoarcus sp. KH32C 198107 1 species 199 Azoarcus sp. CIB 0 species 418699 1 0 131 Azoarcus olearius species 1 2067960 0 Azoarcus sp. SY39 164 genus 1 6 33057 19 0 Thauera 713 0 126 Thauera humireducens species 1134435 1 species 1 96773 0 Thauera chlorobenzoica 144 0 Thauera aromatica 119 species 59405 1 2609274 2 no rank 305 0 species 1 2005884 0 Thauera sp. K11 135 Thauera sp. MZ1T 170 0 85643 1 species Azonexaceae 154 0 4 3 2008795 family 1 Dechloromonas 150 0 1 2 73029 genus 1 259537 1 species 149 Dechloromonas aromatica 0 2694 0 11 119066 no rank 142 0 327159 1 genus 327160 1 species Candidatus Accumulibacter phosphatis 142 0 81 Candidatus Nasuia 2 0 2 1301080 1 genus Candidatus Nasuia deltocephalinicola 79 0 1 1160784 species 7 0 2062 Kinetoplastibacterium 1 genus 6 33055 1 994692 species Candidatus Kinetoplastibacterium desouzaii 561 0 1 994696 species Candidatus Kinetoplastibacterium oncopeltii 377 0 Candidatus Kinetoplastibacterium crithidii 433 0 1 33056 species 994695 1 species Candidatus Kinetoplastibacterium galatii 307 0 0 377 Kinetoplastibacterium blastocrithidii species 1 233181 393 0 1 1381133 genus species 669502 1 0 393 Candidatus Profftella armatura 16 0 189384 1 genus species 1 189385 0 Candidatus Tremblaya princeps 16 no rank 2 33809 0 325 0 152 Betaproteobacteria bacterium GR16-43 species 1904640 1 173 beta proteobacterium CB 0 1 543913 species 41 32003 order 1 Nitrosomonadales 4226 0 16 262 Gallionellaceae 0 6 90627 4 1 family genus 1 96 0 126 0 126 Gallionella capsiferriformans species 1 370405 genus 1 2 314343 0 1 Sideroxydans 130 species 63745 1 0 Sideroxydans lithotrophicus 129 242 0 3 2772226 family 0 79 genus 1 1778653 79 0 2637784 1 no rank 0 79 Sulfuriferula sp. AH1 species 1985873 1 0 2 Sulfuricella 163 genus 1 2 935200 Sulfuricella denitrificans 161 0 1 649841 species 1 family 3 2008790 0 4 115 Thiobacillaceae 111 Thiobacillus 2 0 2 919 1 genus Thiobacillus denitrificans 109 0 36861 1 species 9 0 237 Sterolibacteriaceae 1 family 5 2008793 genus 1 2 1054211 0 1 Sulfuritalea 100 species 1 748811 0 99 Sulfuritalea hydrogenivorans genus 1 2 378210 1 0 Methyloversatilis 128 127 0 2639971 1 no rank 1 1842540 species 127 Methyloversatilis sp. RAC08 0 12 206379 family 1 Nitrosomonadaceae 1611 12 0 1 genus 4 35798 0 2 268 Nitrosospira species 1 35799 0 74 Nitrosospira briensis 1 1288494 species 120 Nitrosospira lacus 0 0 Nitrosospira multiformis 72 species 1 1231 genus 1 7 914 9 0 Nitrosomonas 1331 915 1 species 123 Nitrosomonas europaea 0 0 522 no rank 2 2609265 species 261292 1 0 Nitrosomonas sp. Is79A3 199 323 Nitrosomonas sp. AL212 0 153948 1 species 298 Nitrosomonas communis 0 1 44574 species 156 Nitrosomonas eutropha 0 1 916 species species 44577 1 0 223 Nitrosomonas ureae family 1 32011 13 10 0 Methylophilaceae 1743 3 359407 1 genus 498 Methylotenera 0 6 species 1 359408 0 Methylotenera mobilis 214 Methylotenera versatilis 278 0 1055487 1 species 1 16 genus 121 0 121 0 2630143 1 no rank 121 Methylophilus sp. TWE2 0 1 1662285 species 3 1679002 1 genus 811 Candidatus Methylopumilus 5 0 0 593 Candidatus Methylopumilus planktonicus species 1581557 1 213 Candidatus Methylopumilus turicensis 0 1581680 1 species 1 0 Methylobacillus 107 genus 1 404 2 species 405 1 0 106 Methylobacillus flagellatus genus 1 3 81682 0 2 Methylovorus 196 no rank 2634027 1 0 96 1 887061 species 96 Methylovorus sp. MP688 0 0 Methylovorus glucosotrophus 98 species 1 266009 34 0 3664 Neisseriales 1 order 206351 34 11 1499392 family 1 Chromobacteriaceae 1242 0 12 Jeongeupia 121 0 2 885864 2 genus 1 1 2619593 no rank 119 0 1906741 1 species Jeongeupia sp. USM3 119 0 0 132 genus 168470 1 168471 1 species Laribacter hongkongensis 132 0 682 0 90153 4 no rank 535 4 1 genus 682 Chromobacterium 0 9 0 317 Chromobacterium vaccinii species 1 1108595 species 1 536 0 189 Chromobacterium violaceum no rank 1 2641838 0 167 2059672 1 species 167 Chromobacterium sp. ATCC 53434 0 1 187 genus 113 0 113 0 1 2620219 no rank 1 1938604 species 113 Aquaspirillum sp. LM1 0 1 genus 2 568394 4 0 182 Pseudogulbenkiania 2642558 1 no rank 178 0 0 178 Pseudogulbenkiania sp. NH8B species 1 748280 2388 Neisseriaceae 8 0 481 22 1 family 538 1 genus 87 0 87 Eikenella corrodens 0 1 539 species genus 1 482 12 0 19 Neisseria 1228 0 Neisseria sicca 68 species 490 1 1 487 species 346 Neisseria meningitidis 0 488 1 species Neisseria mucosa 73 0 Neisseria elongata 85 0 1 495 species 326523 1 species Neisseria zoodegmatis 104 0 0 152 no rank 2623750 2 81 Neisseria sp. KEM232 0 655307 1 species 1 1853276 species Neisseria sp. 10022 71 0 species 485 1 0 123 Neisseria gonorrhoeae species 1 28091 0 101 Neisseria weaveri 1 486 species Neisseria lactamica 100 0 0 Neisseria sp. 10023 57 species 1853278 1 1 421605 no rank 347 0 0 Neisseriaceae bacterium DSM 100970 347 species 2052837 1 177 Simonsiella 0 1 2 71 1 genus 0 Simonsiella muelleri 176 species 72 1 1 0 Snodgrassella 281 genus 1 2 1193515 species 1196083 1 0 280 Snodgrassella alvi 260 Vitreoscilla 2 0 59 3 1 genus no rank 2627922 1 0 180 180 Vitreoscilla sp. C1 0 96942 1 species species 1 63 0 78 Vitreoscilla filiformis Burkholderiales 57842 432 0 228 80840 order 1 75682 28 family 1 Oxalobacteraceae 4469 31 0 genus 1 846 0 93 species 1 847 0 Oxalobacter formigenes 93 14 0 1087 Janthinobacterium 1 genus 29580 7 no rank 4 2610881 0 690 species 1644131 1 0 227 Janthinobacterium sp. 1_2014MBL_MicDiv 0 Janthinobacterium sp. B9-8 161 species 1236179 1 0 Janthinobacterium sp. Marseille 140 species 1 375286 162 Janthinobacterium sp. LM6 0 1 1938606 species 0 Janthinobacterium svalbardensis 247 species 1 368607 species 1 55508 0 Janthinobacterium agaricidamnosum 136 0 1 Herminiimonas 261 genus 1 3 303379 204773 1 species Herminiimonas arsenicoxydans 142 0 0 118 Herminiimonas arsenitoxidans species 1 1809410 690 Collimonas 23 0 202907 4 1 genus 1 279113 species Collimonas pratensis 223 0 256 Collimonas arenae 0 1 279058 species 0 188 Collimonas fungivorans species 158899 1 genus 1 6 149698 18 0 Massilia 905 Massilia sp. ZMN-3 208 0 2072590 1 species 0 360 no rank 2609279 2 species 1678028 1 0 Massilia sp. NR 4-1 163 species 1707785 1 0 Massilia sp. WG5 197 2045208 1 species Massilia sp. B2 152 0 0 Massilia putida 167 species 1 1141883 10 0 Herbaspirillum 1402 genus 1 6 963 1 92645 species Herbaspirillum frisingense 193 0 2624150 1 no rank 181 0 species 2025949 1 0 Herbaspirillum sp. meg3 181 0 Herbaspirillum seropedicae 307 species 1 964 Herbaspirillum rubrisubalbicans 181 0 80842 1 species Herbaspirillum hiltneri 530 0 341045 1 species 119060 84 1 family 32702 Burkholderiaceae 0 114 1 genus 106589 9 48 0 3803 Cupriavidus Cupriavidus metallidurans 938 0 119219 1 species species 82541 1 0 243 Cupriavidus gilardii 0 1021 no rank 2 2640874 1389192 1 species Cupriavidus sp. USMAHM13 460 0 561 Cupriavidus sp. USMAA2-4 0 1 876364 species species 1 68895 0 Cupriavidus basilensis 657 1 367825 species 418 Cupriavidus sp. USMAA1020 0 0 Cupriavidus necator 278 species 1 106590 248026 1 species 200 Cupriavidus pinatubonensis 0 0 145 genus 1 2571159 species 412963 1 0 Paraburkholderia rhizoxinica 145 1 genus 32008 41 0 387 19941 Burkholderia 7 111527 species group 8555 0 species 1 1637831 0 392 Burkholderia sp. MSMB617WGS 342113 1 species Burkholderia oklahomensis 888 0 Burkholderia pseudomallei 4984 0 28450 1 species 497 Burkholderia sp. MSMB0852 0 1 1637841 species Burkholderia thailandensis 716 0 1 57975 species species 1637837 1 0 353 Burkholderia sp. MSMB0266 0 725 Burkholderia mallei species 1 13373 557 Burkholderia glumae 0 1 337 species 1 41899 species 211 Burkholderia plantarii 0 11 2613784 no rank 2122 0 0 Burkholderia sp. PAMC 28687 131 species 1795874 1 0 Burkholderia sp. Bp7605 154 species 1 1740163 Burkholderia sp. HB1 238 0 1 1678678 species species 1097668 1 0 Burkholderia sp. YI23 271 194 Burkholderia sp. CCGE1001 0 1 640510 species Burkholderia sp. CCGE1003 257 0 1 640512 species 108 Burkholderia sp. PAMC 26561 0 1795043 1 species species 1 1740162 0 166 Burkholderia sp. Bp5365 758796 1 species 281 Burkholderia sp. RPE67 0 1 1468409 species 172 Burkholderia sp. 2002721687 0 species 416344 1 0 150 Burkholderia sp. KJ006 species group 87882 19 0 7692 species 1 152500 0 175 Burkholderia dolosa 459 Burkholderia vietnamiensis 0 1 60552 species 395 Burkholderia multivorans 0 87883 1 species 0 316 Burkholderia ambifaria species 1 152480 0 Burkholderia cepacia 1133 species 1 292 164 Burkholderia diffusa 0 1 488732 species 141 Burkholderia metallica 0 1 488729 species 1 488447 species 289 Burkholderia contaminans 0 1207504 1 species 148 Burkholderia pseudomultivorans 0 species 482957 1 0 903 Burkholderia lata Burkholderia territorii 145 0 1503055 1 species 265293 1 species [Pseudomonas] mesoacidophila 135 0 1 60550 species 149 Burkholderia pyrrocinia 0 202 Burkholderia seminalis 0 488731 1 species species 1503054 1 0 Burkholderia stagnalis 193 735 Burkholderia ubonensis 0 1 101571 species Burkholderia latens 714 0 1 488446 species species 95486 1 0 Burkholderia cenocepacia 995 301 Burkholderia stabilis 0 95485 1 species 0 Burkholderia gladioli 417 species 1 28095 0 19 Ralstonia 1719 genus 1 5 48736 0 226 Ralstonia mannitolilytica species 105219 1 190721 1 species 149 Ralstonia insidiosa 0 329 1 species 242 Ralstonia pickettii 0 species 1 305 0 Ralstonia solanacearum 1083 12 1822464 genus 1 Paraburkholderia 3313 0 32 1 36873 species 280 Paraburkholderia xenovorans 0 733 Paraburkholderia phytofirmans 0 261302 1 species 0 208 Paraburkholderia fungorum species 1 134537 species 148447 1 0 Paraburkholderia phymatum 278 species 1 311230 0 159 Paraburkholderia terrae 0 266 Paraburkholderia hospita species 169430 1 species 948107 1 0 Paraburkholderia sprentiae 252 203 0 1 2615204 no rank 203 Paraburkholderia sp. SOS3 0 1 1926494 species species 1 2026199 0 202 Paraburkholderia aromaticivorans 0 Paraburkholderia caribensis 497 species 1 75105 252970 1 species Paraburkholderia phenoliruptrix 203 0 93217 10 1 genus 2868 Pandoraea 24 0 species 445709 1 0 120 Pandoraea thiooxydans species 93221 1 0 Pandoraea pulmonicola 1128 93220 1 species Pandoraea pnomenusa 297 0 1 93219 species 331 Pandoraea norimbergensis 0 0 Pandoraea faecigallinarum 142 species 656179 1 0 Pandoraea vervacti 157 species 656178 1 0 211 Pandoraea apista species 1 93218 1 573737 species Pandoraea oxalativorans 319 0 1 93222 species 139 Pandoraea sputorum 0 1827195 1 genus 260 0 0 Burkholderia sp. RPE64 260 species 1 758793 44013 4 1 genus 539 Polynucleobacter 0 3 species 1835254 1 0 144 Polynucleobacter duraquae 1 576611 species 256 Polynucleobacter asymbioticus 0 Polynucleobacter necessarius 136 0 1 576610 species 0 2510 no rank 17 224471 Mitsuaria 312 0 2 2 65047 genus 1 0 310 no rank 2648776 1 0 Mitsuaria sp. 7 310 species 1 1658665 0 6 Roseateles 356 genus 1 2 93681 species 1 76731 0 Roseateles depolymerans 350 Paucibacter 429 0 5 2 318147 genus 1 1 2642959 no rank 424 0 species 1768242 1 0 Paucibacter sp. KCTC 42545 424 3 0 192 Leptothrix 1 genus 2 88 0 189 Leptothrix cholodnii species 34029 1 0 2 231 Rubrivivax 1 genus 2 28067 28068 1 species 229 Rubrivivax gelatinosus 0 genus 1 212743 2 0 3 Rhizobacter 166 0 163 Rhizobacter gummiphilus species 1 946333 species 413882 1 0 392 [Polyangium] brachysporum genus 1 32012 2 0 3 Thiomonas 158 0 155 Thiomonas intermedia species 1 926 9 0 274 Methylibium 1 genus 316612 2 0 265 Methylibium petroleiphilum species 105560 1 no rank 2 80841 0 227 species 1469502 1 0 Burkholderiales bacterium GJ-E10 106 121 Burkholderiales bacterium YL45 0 1834205 1 species 1 family 80864 54 0 67 10649 Comamonadaceae Melaminivora 125 1 0 2 1649468 genus 1 1 2641902 no rank 124 0 species 2109913 1 0 124 Melaminivora sp. SC2-9 47420 4 1 genus 539 Hydrogenophaga 0 12 377 0 2 2610897 no rank 0 145 Hydrogenophaga sp. PBC species 795665 1 species 1 1842537 0 232 Hydrogenophaga sp. RAC07 species 1763535 1 0 150 Hydrogenophaga crassostreae Polaromonas 1117 0 4 52972 3 genus 1 Polaromonas naphthalenivorans 309 0 216465 1 species 0 804 no rank 2638319 1 804 Polaromonas sp. JS666 0 296591 1 species Delftia 1210 14 0 5 80865 genus 1 species 80866 1 0 Delftia acidovorans 282 no rank 2613839 2 0 645 0 Delftia sp. Cs1-4 349 species 1 742013 species 1 1920191 0 Delftia sp. HK171 296 Delftia tsuruhatensis 269 0 180282 1 species 201096 1 genus 155 0 1 179636 species Alicycliphilus denitrificans 155 0 1222 Comamonas 0 1 4 283 1 genus species 1082851 1 0 Comamonas serinivorans 469 species 1 225992 0 Comamonas kerstersii 445 285 1 species Comamonas testosteroni 307 0 3 219181 genus 1 Ottowia 235 2 0 species 2109914 1 0 Ottowia sp. KADR8-3 125 0 108 no rank 2645081 1 0 Ottowia sp. oral taxon 894 108 species 1658672 1 12916 9 1 genus 1279 Acidovorax 0 31 4 2684926 no rank 637 0 95 Acidovorax sp. JS42 0 1 232721 species 0 285 Acidovorax sp. T1 species 1858609 1 358220 1 species Acidovorax sp. KKS102 122 0 1842533 1 species Acidovorax sp. RAC01 135 0 0 176 Acidovorax citrulli species 1 80869 0 Acidovorax avenae 231 species 80867 1 1 721785 species 99 Acidovorax ebreus 0 0 Acidovorax sp. NA3 105 species 1 553814 506 Rhodoferax 4 0 5 28065 1 genus 0 Rhodoferax koreense 193 species 1842727 1 1 81479 species 133 Rhodoferax antarcticus 0 53 Rhodoferax saidenbachensis 0 1484693 1 species 1 192843 species Rhodoferax ferrireducens 123 0 genus 2 2490452 0 242 species 1458425 1 0 Comamonadaceae bacterium A1 115 1 1458426 species Comamonadaceae bacterium B1 127 0 0 130 genus 1 238749 1 1546149 species Diaphorobacter polyhydroxybutyrativorans 130 0 0 116 genus 1 2678886 1 2116657 species 116 Melaminivora sp. SC2-7 0 174951 2 genus 1 Ramlibacter 336 0 7 species 94132 1 0 329 Ramlibacter tataouinensis 0 143 genus 665874 2 0 143 no rank 2626134 2 0 69 Limnohabitans sp. 103DPR2 species 1 1678129 0 74 Limnohabitans sp. 63ED37-2 species 1678128 1 genus 1 352450 0 96 0 Simplicispira sp. SC1-8 96 species 2109915 1 1436289 1 genus 187 0 0 187 Candidatus Symbiobacter mobilis species 1436290 1 28 0 Variovorax 2504 genus 1 34072 5 436515 1 species 192 Variovorax boronicumulans 0 no rank 663243 2 0 575 294 Variovorax sp. PMC12 0 2126319 1 species species 1 1795631 0 281 Variovorax sp. PAMC 28711 0 Variovorax paradoxus 1709 species 1 34073 genus 1 364316 2 1 0 Verminephrobacter 440 439 Verminephrobacter eiseniae 0 364317 1 species 33 0 Alcaligenaceae 6853 family 1 506 42 genus 29574 2 0 569 Taylorella equigenitalis 307 0 29575 1 species 0 262 Taylorella asinigenitalis species 84590 1 1 genus 222 6 0 33 1734 Achromobacter 172 Achromobacter insolitus 0 217204 1 species 0 688 Achromobacter xylosoxidans species 1 85698 species 1 217203 0 298 Achromobacter spanius 0 Achromobacter denitrificans 350 species 1 32002 0 193 no rank 2626865 1 Achromobacter sp. AONIH1 193 0 1 1758194 species 2 1100891 genus 1 Paenalcaligenes 154 2 0 Paenalcaligenes hominis 152 0 1 643674 species genus 1 2 90243 0 1 Oligella 127 Oligella urethralis 126 0 1 90245 species 17 517 1 genus 2515 Bordetella 0 39 0 107 no rank 2630031 1 0 Bordetella sp. H567 107 species 1697043 1 species 1 1416806 0 196 Bordetella genomosp. 8 species 519 1 0 Bordetella parapertussis 195 0 Bordetella hinzii 143 species 1 103855 species 518 1 0 318 Bordetella bronchiseptica 463040 1 species 137 Bordetella genomosp. 13 0 0 147 Bordetella bronchialis species 1 463025 0 Bordetella pertussis 219 species 1 520 0 Bordetella holmesii 88 species 35814 1 1416803 1 species 135 Bordetella genomosp. 9 0 0 152 Bordetella flabilis species 1 463014 113 Bordetella trematum 0 1 123899 species 1 463024 species Bordetella genomosp. 6 166 0 1331258 1 species 127 Bordetella pseudohinzii 0 0 91 Bordetella avium species 521 1 species 94624 1 0 142 Bordetella petrii 1 0 97 Orrella 1 genus 1921582 2 species 1 1851544 0 96 Orrella dioscoreae 290425 3 1 genus 274 Advenella 0 4 0 145 Advenella kashmirensis species 310575 1 125 Advenella mimigardefordensis 0 302406 1 species genus 1 1472344 0 173 species 1472345 1 0 173 Basilea psittacipulmonis 0 1 Pusillimonas 179 genus 1 305976 2 no rank 1 2640016 0 178 1 1007105 species 178 Pusillimonas sp. T7-7 0 genus 1 2 359336 2 0 Castellaniella 98 0 96 Castellaniella defragrans species 75697 1 1 genus 507 2 2 0 900 Alcaligenes 1 511 species 898 Alcaligenes faecalis 0 0 234 phylum 1930617 3 234 Calditrichae 0 5 3 1962850 1 class 2 1962852 order 229 0 229 0 1962854 2 family 2 187144 genus 1 Caldithrix 229 0 2 187145 1 species 227 Caldithrix abyssi 0 7252 0 79 1783257 clade 0 3 Verrucomicrobia 2130 phylum 1 74201 21 0 52 class 134549 2 4 0 Candidatus Xiphinematobacter 52 genus 1 134550 2 1 2648876 no rank 48 0 0 Candidatus Xiphinematobacter sp. Idaho Grape 48 species 1704307 1 class 203494 5 0 269 Verrucomicrobiales 269 5 0 5 48461 order 1 1 0 Akkermansiaceae 264 family 1 1647988 4 genus 1 3 239934 0 5 Akkermansia 263 1679444 1 species Akkermansia glycaniphila 121 0 Akkermansia muciniphila 137 0 239935 1 species class 1955630 2 0 237 237 0 2 717963 order 0 237 family 717964 2 2 511745 genus 237 0 150 Methylacidiphilum fumariolicum 0 1 591154 species 0 Methylacidiphilum infernorum 87 species 511746 1 1241 Opitutae 4 0 9 414999 1 class 581 0 2 415001 order 415002 2 family 581 0 Coraliomargarita 581 0 2 442430 2 genus 1 species 1 395922 0 Coraliomargarita akajimensis 579 6 415000 1 order 656 Opitutales 0 1 134623 5 family 1 Opitutaceae 655 0 3 189 Lacunisphaera 0 1 2 1961799 1 genus 1 1838286 species 188 Lacunisphaera limnophila 0 0 274 no rank 278955 1 0 274 Opitutaceae bacterium TAV5 species 1 794903 genus 1 178440 0 189 0 189 Opitutus terrae species 107709 1 0 328 no rank 2 417295 0 171 Verrucomicrobia bacterium species 1 2026799 Verrucomicrobia bacterium IMCC26134 157 0 1637999 1 species 0 1503 phylum 204428 20 1 class 20 204429 0 11 1503 Chlamydiia order 1 51291 14 2 0 Chlamydiales 1046 1044 Chlamydiaceae 0 2 13 809 1 family no rank 1113537 12 0 1042 Chlamydia 1042 11 0 810 12 genus 1 species 83558 1 0 Chlamydia pneumoniae 159 Chlamydia trachomatis 102 0 813 1 species 103 Chlamydia caviae 0 83557 1 species 83555 1 species Chlamydia abortus 52 0 1457153 1 species Chlamydia gallinacea 80 0 0 97 Chlamydia avium species 1 1457141 species 83554 1 0 Chlamydia psittaci 87 0 Chlamydia pecorum 133 species 85991 1 1 83560 species 75 Chlamydia muridarum 0 0 Chlamydia suis 66 species 83559 1 77 Chlamydia felis 0 1 83556 species order 5 1963360 0 446 0 102 family 92712 1 genus 34093 1 0 102 1 83561 species 102 Simkania negevensis 0 0 277 family 92713 3 0 1 Candidatus Protochlamydia 114 genus 1 2 282132 389348 1 species Candidatus Protochlamydia naegleriophila 113 0 1 83551 genus 163 0 Parachlamydia acanthamoebae 163 0 1 83552 species 1 92714 family 67 0 genus 71666 1 0 67 0 Waddlia chondrophila 67 species 71667 1 phylum 32 203682 0 3306 0 444 class 666505 5 order 1 666506 3 3 0 Phycisphaerales 287 family 666507 2 0 284 genus 1 2 666508 1 0 Phycisphaera 284 547188 1 species 283 Phycisphaera mikurensis 0 2483366 2 order 157 0 157 0 2483367 2 family genus 2483368 2 0 157 species 1941349 1 0 Phycisphaerae bacterium ST-PulAB-D4 86 0 71 Phycisphaerae bacterium L21-RPul-D3 species 1940790 1 Planctomycetia 2129 11 0 24 203683 class 1 order 5 2691354 0 444 0 83 family 2 2691358 0 1 Thermogutta 83 genus 1 2 1676125 82 Thermogutta terrifontis 0 1331910 1 species family 3 2691357 0 361 genus 123 1 0 198 125 1 species Pirellula staleyi 198 0 genus 1 265488 2 0 1 Rhodopirellula 163 Rhodopirellula baltica 162 0 265606 1 species 594 0 7 2691356 order 7 1763524 family 1 Isosphaeraceae 594 0 2 13 0 Singulisphaera 167 genus 1 466152 2 Singulisphaera acidiphila 154 0 466153 1 species 2 0 197 Paludisphaera 1 genus 2 1763521 195 Paludisphaera borealis 0 1387353 1 species 127 2 genus 1 Isosphaera 228 15 0 213 Isosphaera pallida 0 128 1 species 0 228 order 2 2691355 1914233 2 family 228 0 genus 1 113 2 0 14 Gemmata 228 214 0 2622970 1 no rank 1 1630693 species 214 Gemmata sp. SH-PL17 0 order 1 112 9 0 32 Planctomycetales 852 1 family 8 126 27 0 820 Planctomycetaceae 172 0 1 1936111 genus 0 172 Fuerstia marisgermanicae species 1891926 1 2 1649490 1 genus 122 Rubinisphaera 2 0 120 Rubinisphaera brasiliensis 0 119 1 species 86 0 1 1649480 genus species 1 120 0 86 Planctopirus limnophila 1 genus 118 3 2 0 413 Planctomyces 2 2648843 no rank 411 0 1 1636152 species Planctomyces sp. SH-PL62 247 0 1 1632864 species Planctomyces sp. SH-PL14 164 0 2517206 3 class 733 0 733 Candidatus Brocadiales 0 2 1127829 3 1 order 2 1127830 1 family 731 Candidatus Brocadiaceae 0 1 380738 1 genus 730 0 730 Candidatus Kuenenia stuttgartiensis 0 174633 1 species 0 215 phylum 3 134625 1 class 1921781 3 0 1 215 Kiritimatiellae 0 214 order 1921782 2 2 1921783 family 214 0 Kiritimatiella 214 2 0 1921784 2 genus 1 1307763 1 species 212 Kiritimatiella glycovorans 0 0 98 phylum 3 256845 1 class 1313211 3 0 2 98 Lentisphaeria order 1 278082 2 1 0 Victivallales 96 95 0 1 1674876 no rank species 2094242 1 0 Victivallales bacterium CCUG 44730 95 phylum 3 2138240 0 71 0 71 class 2138243 3 1 order 2138246 3 0 1 71 Coprothermobacterales 0 70 family 2138247 2 0 1 Coprothermobacter 70 genus 1 68335 2 69 Coprothermobacter proteolyticus 0 1 35786 species 4037 0 200918 38 phylum 18 0 4037 Thermotogae 1 class 188708 38 4 1643946 order 273 0 1 family 4 1643948 0 1 273 Kosmotogaceae genus 1 1184396 0 58 0 58 Mesotoga prima species 1184387 1 651456 2 genus 214 0 0 78 Kosmotoga olearia species 1 651457 0 136 Kosmotoga pacifica species 1330330 1 Thermotogales 2358 6 0 27 2419 order 1 family 1 10 1643950 1 0 Fervidobacteriaceae 1528 1 genus 2422 4 0 2 420 Fervidobacterium Fervidobacterium nodosum 176 0 2424 1 species 0 Fervidobacterium islandicum 86 species 1 2423 1 93466 species Fervidobacterium pennivorans 156 0 2420 5 1 genus 1107 Thermosipho 0 5 0 255 Thermosipho melanesiensis species 1 46541 2676525 2 no rank 521 0 269 Thermosipho sp. 1070 0 1 1437364 species 0 252 Thermosipho sp. 1063 species 1462747 1 326 Thermosipho africanus 0 2421 1 species 824 0 188709 16 family 0 5 418 Pseudothermotoga 1 genus 5 1643951 species 38322 1 0 143 Pseudothermotoga elfii 0 Pseudothermotoga lettingae 135 species 177758 1 species 1 119394 0 Pseudothermotoga thermarum 102 species 1 57487 0 33 Pseudothermotoga hypogea 7 0 Thermotoga 406 genus 1 11 2335 2631113 4 no rank 119 0 Thermotoga sp. RQ7 33 0 126738 1 species 1 1157948 species Thermotoga sp. 2812B 30 0 1157947 1 species Thermotoga sp. Cell2 27 0 Thermotoga sp. RQ2 29 0 1 126740 species 93930 1 species 32 Thermotoga naphthophila 0 Thermotoga profunda 107 0 1508420 1 species Thermotoga maritima 38 0 1 2336 species 0 Thermotoga petrophila 36 species 1 93929 1 2337 species 38 Thermotoga neapolitana 0 species 1508419 1 0 29 Thermotoga caldifontis 1643947 6 order 1 Petrotogales 1388 1 0 1643949 5 family 1387 0 28236 1 genus 224 0 224 Petrotoga mobilis 0 69499 1 species genus 1511648 1 0 362 species 1 1006576 0 Defluviitoga tunisiensis 362 1 genus 160798 3 0 5 801 Marinitoga 2640159 1 no rank 393 0 1545835 1 species Marinitoga sp. 1137 393 0 1 149715 species 403 Marinitoga piezophila 0 8970 0 55 203691 phylum 55 203692 1 class 8970 Spirochaetia 0 17 0 3 Brachyspirales 2037 order 1 6 1643686 0 2034 family 5 143786 genus 1 5 29521 11 0 Brachyspira 2034 species 1 84378 0 Brachyspira murdochii 430 Brachyspira intermedia 439 0 1 84377 species Brachyspira hyodysenteriae 507 0 159 1 species 0 Brachyspira pilosicoli 647 species 52584 1 0 7 Spirochaetales 5555 order 1 136 40 17 1643685 family 1 Borreliaceae 3599 0 11 Borrelia 2091 34 0 138 8 genus 1 species 1 44449 0 Borrelia recurrentis 272 1 143 species Borrelia anserina 169 0 0 Borrelia turicatae 162 species 1 142 140 1 species 174 Borrelia hermsii 0 170 Borrelia parkeri 0 141 1 species species 40834 1 0 669 Borrelia duttonii 0 441 Borrelia miyamotoi species 1 47466 1 genus 8 64895 0 77 1497 Borreliella species 1 139 0 Borreliella burgdorferi 216 species 64897 1 0 Borreliella bissettii 168 Borreliella bavariensis 158 0 1 664662 species 307 Borreliella garinii 0 29519 1 species species 1 1674146 0 Borrelia mayonii 235 194 Borreliella afzelii 0 29518 1 species 1 62088 species 142 Borreliella valaisiana 0 0 21 Spirochaetaceae 1949 family 1 22 137 0 5 Treponema 1001 genus 1 157 12 215591 1 species Treponema caldarium 69 0 65 Treponema azotonutricium 0 150829 1 species species 1 81028 0 Treponema brennaborense 47 0 153 Treponema succinifaciens species 1 167 31 Treponema pallidum 0 1 160 species 0 136 Treponema denticola species 1 158 no rank 2638727 1 0 56 species 1539298 1 0 Treponema sp. OMZ 838 56 Treponema paraluiscuniculi 50 0 1 53435 species 0 Treponema pedis 119 species 1 409322 141 Treponema primitia 0 88058 1 species 0 Treponema putidum 129 species 221027 1 1911556 1 genus 113 0 0 113 Sediminispirochaeta smaragdinae species 55206 1 2 0 191 Sphaerochaeta 1 genus 399320 4 0 Sphaerochaeta pleomorpha 66 species 1131707 1 Sphaerochaeta globosa 55 0 1131703 1 species Sphaerochaeta coccoides 68 0 273376 1 species 1 1616789 genus 419 0 Salinispira pacifica 419 0 1307761 1 species Spirochaeta 204 0 1 146 3 genus 1 78 Spirochaeta africana 0 1 46355 species Spirochaeta thermophila 125 0 154 1 species order 1643688 8 0 1361 170 8 family 1 Leptospiraceae 1361 7 0 338321 1 genus 80 0 80 Turneriella parva 0 1 29510 species Leptospira 1274 3 0 6 171 genus 1 28452 1 species 144 Leptospira alstonii 0 0 Leptospira interrogans 522 species 173 1 species 1 172 0 Leptospira biflexa 237 species 28183 1 0 128 Leptospira santarosai 0 Leptospira borgpetersenii 240 species 1 174 0 547 phylum 4 68297 203486 4 class 547 0 203487 4 1 order 547 Dictyoglomales 2 0 family 3 203488 0 545 1 genus 13 3 1 0 545 Dictyoglomus 0 Dictyoglomus thermophilum 262 species 14 1 0 Dictyoglomus turgidum 282 species 513050 1 200930 8 phylum 1535 0 68337 8 1 class 1535 Deferribacteres 7 0 1528 Deferribacterales 0 7 7 191393 1 order family 1 191394 6 0 5 Deferribacteraceae 1521 genus 2351 1 0 502 1 2352 species Flexistipes sinusarabici 502 0 138 0 117999 1 genus 0 138 Denitrovibrio acetiphilus species 1 118000 648 Deferribacter 0 1 53572 2 1 genus species 197162 1 0 647 Deferribacter desulfuricans 0 228 genus 1 545865 Calditerrivibrio nitroreducens 228 0 477976 1 species no rank 2323 3 0 291 clade 1783234 3 0 291 255 0 95901 2 clade 255 0 2 2497643 class 2497644 2 order 255 0 2497645 2 family 255 0 Candidatus Babela 255 3 0 2 1551504 genus 1 0 Candidatus Babela massiliensis 252 species 1 673862 36 0 95818 1 phylum 1895827 1 no rank 36 0 species 2056494 1 0 36 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 phylum 40117 14 0 936 14 203693 class 1 Nitrospira 936 0 3 18 0 Nitrospirales 933 order 1 189778 13 12 189779 1 family 915 Nitrospiraceae 0 3 1 genus 28261 2 0 1 442 Thermodesulfovibrio species 28262 1 0 441 Thermodesulfovibrio yellowstonii Leptospirillum 197 0 6 179 4 genus 1 species group 1 261386 0 54 species 178606 1 0 54 Leptospirillum ferriphilum species group 1 655606 0 88 0 88 Leptospirillum ferrooxidans species 180 1 49 0 1 261385 species group 1660083 1 species Leptospirillum sp. Group II 'CF-1' 49 0 273 Nitrospira 0 4 1234 5 1 genus 1 42253 species 99 Nitrospira moscoviensis 0 1 330214 species 45 Nitrospira defluvii 0 0 59 Candidatus Nitrospira inopinata species 1715989 1 0 66 Nitrospira japonica species 1 1325564 890 0 200940 7 phylum 1 class 67799 7 0 1 890 Thermodesulfobacteria 889 0 6 188710 order 6 188711 1 family 889 Thermodesulfobacteriaceae 0 3 241192 1 genus 149 0 149 Thermodesulfatator indicus 0 171695 1 species genus 1 2 444090 0 1 Caldimicrobium 141 0 Caldimicrobium thiodismutans 140 species 1 1653476 1740 2 genus 596 0 species 1741 1 0 157 Thermodesulfobacterium commune 1 1295609 species 439 Thermodesulfobacterium geofontis 0 508458 5 phylum 312 0 class 5 649775 0 312 0 312 order 5 649776 5 649777 family 312 0 1 336260 genus 80 0 1 336261 species Thermovirga lienii 80 0 1 508459 genus 80 0 species 1197717 1 0 80 Cloacibacillus porcorum 0 29 genus 49894 1 29 Acetomicrobium mobile 0 1 97477 species genus 81461 1 0 66 66 Thermanaerovibrio acidaminovorans 0 1 81462 species 0 57 genus 81466 1 Aminobacterium colombiense 57 0 81468 1 species