members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 13064 31 4784 8981805 57 4448 8910004 superkingdom Bacteria 1 0 2 0 508458 phylum 9 1034 1 Synergistia class 649775 0 4 1034 9 4 8 1030 order Synergistales 1 0 649776 7 7 1026 family Synergistaceae 1 0 649777 336260 0 genus 196 1 1 196 Thermovirga lienii species 336261 0 genus Cloacibacillus 1 0 508459 5 2 235 0 1197717 species Cloacibacillus porcorum 230 1 0 49894 genus 1 206 Acetomicrobium mobile species 97477 0 1 206 247 1 81466 0 genus 1 247 species Aminobacterium colombiense 0 81468 genus 0 81461 135 1 1 135 81462 0 Thermanaerovibrio acidaminovorans species 289 2 0 2138240 phylum 0 2138243 class 2 289 Coprothermobacterales order 1 2138246 0 8 2 289 281 1 0 2138247 family 1 281 68335 0 genus 35786 0 Coprothermobacter proteolyticus species 1 281 200940 0 phylum 9 3484 9 3484 6 0 67799 class Thermodesulfobacteria 1 8 3478 5 0 188710 order Thermodesulfobacteriales 1 21 3473 7 1 Thermodesulfobacteriaceae family 188711 0 Thermodesulfobacterium genus 1 1740 0 4 3 2426 species Thermodesulfobacterium geofontis 0 1295609 1 1745 species Thermodesulfobacterium commune 0 1741 1 677 1 Thermodesulfatator genus 241192 0 4 487 2 1 483 0 171695 species Thermodesulfatator indicus 539 1 genus 0 444090 539 1 Caldimicrobium thiodismutans species 1653476 0 phylum 40117 0 3511 14 14 3511 22 0 203693 class Nitrospira 1 22 3489 13 1 Nitrospirales order 189778 0 8 3467 12 1 Nitrospiraceae family 189779 0 1 genus Leptospirillum 0 179 6 768 4 261385 0 species group 1 199 Leptospirillum sp. Group II 'CF-1' species 1660083 0 199 1 0 655606 species group 343 1 species Leptospirillum ferrooxidans 0 180 1 343 220 1 261386 0 species group 220 1 0 178606 species Leptospirillum ferriphilum 5 953 11 1234 0 Nitrospira genus 1 1 297 Nitrospira moscoviensis species 42253 0 211 1 Candidatus Nitrospira inopinata species 1715989 0 1325564 0 Nitrospira japonica species 1 202 330214 0 Nitrospira defluvii species 1 232 28261 0 Thermodesulfovibrio genus 1 2 1738 1 1737 1 0 28262 species Thermodesulfovibrio yellowstonii 378 5 phylum 200938 0 5 378 2 118001 0 Chrysiogenetes class 1 1 order Chrysiogenales 0 189769 4 376 4 3 372 5 0 189770 family Chrysiogenaceae 1 1 genus Desulfurispirillum 0 393029 6 367 2 1 361 Desulfurispirillum indicum species 936456 0 762 4 phylum 0 1930617 762 4 4 1962850 0 1 Calditrichae class 1962852 0 1 Calditrichales order 758 3 3 5 755 2 1 Calditrichaceae family 1962854 0 genus 0 187144 1 750 1 750 Caldithrix abyssi species 187145 0 43 15708 phylum 0 200918 0 188708 class Thermotogae 1 43 15708 32 6 945 3 0 1643946 order Kosmotogales 1 5 942 2 1643948 0 Kosmotogaceae family 1 4 712 3 1 Kosmotoga genus 651456 0 314 1 species Kosmotoga olearia 0 651457 394 1 Kosmotoga pacifica species 1330330 0 1 228 1184396 0 genus 1 228 Mesotoga prima species 1184387 0 7 8 5529 Petrotogales order 1 1643947 0 family 0 1643949 7 5522 3 3365 33 0 160798 genus Marinitoga 1 2640159 0 no rank 1575 1 1575 1 1545835 0 Marinitoga sp. 1137 species species Marinitoga piezophila 0 149715 1 1757 783 2 5 0 28236 1 genus Petrotoga 1 778 Petrotoga mobilis species 69499 0 1511648 0 1 Defluviitoga genus 1374 2 2 1 1372 species Defluviitoga tunisiensis 0 1006576 16 28 9202 Thermotogales order 1 2419 0 17 3206 14 0 188709 family Thermotogaceae 1 1643951 0 1 Pseudothermotoga genus 1572 5 35 species Pseudothermotoga lettingae 0 177758 519 1 38322 0 Pseudothermotoga elfii species 510 1 57487 0 Pseudothermotoga hypogea species 99 1 1 409 119394 0 Pseudothermotoga thermarum species Thermotoga genus 1 2335 0 27 11 1620 1 142 0 2336 species Thermotoga maritima 1 461 0 1508420 species Thermotoga profunda 0 93929 species Thermotoga petrophila 1 95 Thermotoga caldifontis species 1508419 0 1 106 474 4 2631113 0 no rank 163 1 Thermotoga sp. RQ7 species 126738 0 74 1 0 1157947 species Thermotoga sp. Cell2 122 1 Thermotoga sp. 2812B species 1157948 0 Thermotoga sp. RQ2 species 126740 0 1 115 Thermotoga naphthophila species 93930 0 1 124 1 191 species Thermotoga neapolitana 0 2337 1643950 0 1 Fervidobacteriaceae family 5980 10 12 Fervidobacterium genus 1 2422 0 15 4 1534 species Fervidobacterium pennivorans 0 93466 1 557 673 1 Fervidobacterium nodosum species 2424 0 0 2423 species Fervidobacterium islandicum 1 289 26 4434 5 1 genus Thermosipho 0 2420 Thermosipho melanesiensis species 46541 0 1102 1 2038 2 0 2676525 no rank 1014 1 0 1462747 species Thermosipho sp. 1063 1437364 0 Thermosipho sp. 1070 species 1024 1 1268 1 0 2421 species Thermosipho africanus 0 200783 phylum 9041 29 29 9041 11 0 187857 class Aquificae 1 order 0 1485951 5 1426 0 558314 1 family Desulfurobacteriaceae 1426 5 11 1273 2 2 0 64159 1 genus Desulfurobacterium species Desulfurobacterium thermolithotrophum 0 64160 1271 1 1 2 142 Thermovibrio genus 1 171868 0 1 141 species Thermovibrio ammonificans 0 228745 1 order Aquificales 0 32069 14 7604 23 0 224027 1 family Hydrogenothermaceae 3590 6 5 genus Sulfurihydrogenibium 1 0 212790 22 3 2781 species Sulfurihydrogenibium azorense 0 309806 1245 1 2619248 0 no rank 1 1514 species Sulfurihydrogenibium sp. YO3AOP1 0 436114 1 1514 0 182899 1 genus Persephonella 804 2 2 Persephonella marina species 309805 0 802 1 2 408 no rank 90150 0 412592 0 1 Thermosulfidibacter genus 408 2 1 407 1 Thermosulfidibacter takaii species 412593 0 1 family Aquificaceae 0 64898 4 3592 14 genus Hydrogenobacter 1 0 939 1 2 241 species Hydrogenobacter thermophilus 0 940 1 240 0 2713 genus Aquifex 1 2 133 2 Aquifex aeolicus species 63363 0 1 131 93 6 2937 Hydrogenobaculum genus 1 168657 0 5 2844 2622382 0 no rank 547146 0 Hydrogenobaculum sp. SN species 1 566 Hydrogenobaculum sp. Y04AAS1 species 380749 0 1 580 Hydrogenobaculum sp. SHO species 547145 0 1 566 Hydrogenobaculum sp. 3684 species 547143 0 566 1 547144 0 Hydrogenobaculum sp. HO species 566 1 4 3 277 Thermocrinis genus 1 75905 0 species Thermocrinis albus 0 136094 134 1 139 1 0 75906 species Thermocrinis ruber clade 1783270 0 377 290129 phylum 0 456828 1 726 456826 0 genus 726 1 456827 0 Candidatus Cloacimonas acidaminovorans species 1 726 clade 68336 0 286991 364 phylum 0 1134404 8 2621 2621 8 5 795747 0 1 Ignavibacteria class 2616 7 15 0 795748 1 order Ignavibacteriales 2 467 3 1 family Melioribacteraceae 0 1334117 1 genus Melioribacter 0 1134403 12 465 2 453 1 species Melioribacter roseus 0 1134405 family Ignavibacteriaceae 1 0 795749 1 3 2134 2133 2 8 795750 0 1 Ignavibacterium genus 1 2125 0 591197 species Ignavibacterium album Bacteroidetes phylum 1 976 0 51 334 279663 class Sphingobacteriia 1 0 117747 12 24 17260 200666 0 1 Sphingobacteriales order 17248 23 40 Sphingobacteriaceae family 1 84566 0 58 22 17208 1 genus Solitalea 0 929509 8 1288 2 species Solitalea canadensis 0 995 1280 1 0 423349 genus Mucilaginibacter 1 4 2239 13 0 1550579 species Mucilaginibacter gotjawali 1 920 1 508 0 2617802 no rank 508 1 species Mucilaginibacter sp. PAMC 26640 0 1300914 798 1 0 1234841 species Mucilaginibacter sp. BJC16-A31 genus Pedobacter 1 0 84567 54 6 5836 Pedobacter ginsengisoli species 363852 0 1 1405 2628915 0 no rank 1168 1 1727164 0 Pedobacter sp. PACM 27299 species 1168 1 1 1027 species Pedobacter steynii 0 430522 984 0 Pedobacter heparinus species 1 800 1382 1 188932 0 Pedobacter cryoconitis species 1 1947 no rank 84568 0 1986952 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 1947 1 1347 2 4 0 1649482 1 genus Pseudopedobacter 1 1343 Pseudopedobacter saltans species 151895 0 28453 0 Sphingobacterium genus 1 6 4493 35 3606 4 0 2609468 no rank 642 1 0 743722 species Sphingobacterium sp. 21 897 1 species Sphingobacterium sp. B29 0 1933220 937 1 Sphingobacterium sp. G1-14 species 2003121 0 1 1130 0 1538644 species Sphingobacterium sp. ML3W Sphingobacterium mizutaii species 1010 0 1 852 0 768503 1 class Cytophagia 30719 61 47 60 30672 142 0 768507 order Cytophagales 1 6 4 5760 family Flammeovirgaceae 1 0 200667 3544 1 0 340671 no rank 1257021 0 Flammeovirgaceae bacterium 311 species 3544 1 2210 2 13 59739 0 1 Flammeovirga genus no rank 2637820 0 1 2197 2197 1 Flammeovirga sp. MY04 species 1191459 0 Cyclobacteriaceae family 1 563798 0 13 10 6103 1 902 2 1 Algoriphagus genus 246875 0 901 1 Algoriphagus sp. M8-2 species 1727163 0 Cyclobacterium genus 1 68288 0 29 3 2789 1 1375 104 0 Cyclobacterium marinum species Cyclobacterium amurskyense species 320787 0 1 1385 232244 0 Belliella genus 1 2 1704 12 1692 1 232259 0 Belliella baltica species genus Echinicola 1 0 390846 28 2 695 667 1 0 390884 species Echinicola vietnamensis family Amoebophilaceae 1 0 1501348 7 5 975 313 2 1 0 273135 1 genus Candidatus Cardinium 1 312 2641185 0 no rank 0 249402 species Cardinium endosymbiont of Encarsia pergandiella 1 312 281119 0 Candidatus Amoebophilus genus 1 2 655 8 species Candidatus Amoebophilus asiaticus 0 281120 1 647 2774 3 13 1937968 0 1 Bernardetiaceae family 1 Bernardetia genus 1937972 0 19 2761 2 Bernardetia litoralis species 999 0 2742 1 6 3 1148 Persicobacteraceae family 1 1853234 0 1 genus Persicobacter 0 59740 11 1142 2 1131 1 no rank 0 2664020 1 1131 1085624 0 Persicobacter sp. JZB09 species 16 5731 17 1853232 0 Hymenobacteraceae family 1 14 1656 4 1 genus Rufibacter 0 1379908 674 1 Rufibacter tibetensis species 512763 0 968 2 2639626 0 no rank 478 1 1379909 0 Rufibacter sp. DG15C species 490 1 species Rufibacter sp. DG31D 0 1379910 3 951 14 323449 0 Pontibacter genus 1 388950 0 Pontibacter akesuensis species 405 1 Pontibacter korlensis species 400092 0 1 532 8 3107 33 89966 0 Hymenobacter genus 1 405 1 0 1411621 species Hymenobacter sedentarius 2272 5 2615202 0 no rank 1 624 1484116 0 Hymenobacter sp. PAMC 26554 species species Hymenobacter sp. DG25B 0 1385664 1 282 Hymenobacter sp. DG25A species 1385663 0 1 253 1 656 species Hymenobacter sp. PAMC 26628 0 1484118 0 1356852 species Hymenobacter sp. APR13 457 1 397 1 1446467 0 Hymenobacter swuensis species family Cytophagaceae 1 0 89373 14 16 6095 725 2 8 319458 0 1 Leadbetterella genus species Leadbetterella byssophila 0 316068 717 1 3 2 317 genus Fibrella 1 0 861914 2620963 0 no rank 1 314 1 314 species Fibrella sp. ES10-3-2-2 0 1834519 1014 1 genus 0 105 Runella slithyformis species 106 0 1 1014 978 0 Cytophaga genus 1 2 1184 16 985 0 Cytophaga hutchinsonii species 1168 1 107 0 1 Spirosoma genus 2355 6 15 1379870 0 Spirosoma radiotolerans species 460 1 326 1 564064 0 Spirosoma rigui species 575 1 2057025 0 Spirosoma sp. HA7 species 1178516 0 Spirosoma montaniterrae species 1 469 0 1211326 species Spirosoma aerolatum 1 510 486 2 9 120831 0 1 Dyadobacter genus 94254 0 Dyadobacter fermentans species 1 477 2762301 0 family 1944 2 1 Marivirga genus 869806 0 20 1944 2 species Marivirga tractuosa 0 1006 1 1924 5206 16 8 1853228 0 1 Chitinophagia class 13 5198 15 1 Chitinophagales order 1853229 0 62 5185 14 1 Chitinophagaceae family 563835 0 5 672 2 1 genus Arachidicoccus 0 1769012 1 667 0 2636138 no rank 1 667 1850526 0 Arachidicoccus sp. BS20 species genus Flavisolibacter 1 0 398041 1 2 831 Flavisolibacter tropicus species 1492898 0 1 830 10 1004 3 1 genus Niabella 0 379899 1176587 0 Niabella ginsenosidivorans species 507 1 Niabella soli species 446683 0 1 487 1 Niastella genus 354354 0 8 892 2 0 354356 species Niastella koreensis 884 1 1 597 genus 0 649460 597 1 477680 0 Filimonas lacunae species 1127 3 6 79328 0 1 Chitinophaga genus 558 1 0 2029983 species Chitinophagaceae bacterium 13 1 563 0 79329 species Chitinophaga pinensis 34 20414 69 1 Bacteroidia class 200643 0 12 4426 23 0 1970189 order Marinilabiliales 1 4 1028 3 1 Prolixibacteraceae family 1471398 0 4 1024 2 1 Draconibacterium genus 1471399 0 1168034 0 Draconibacterium orientale species 1 1020 2 2 1511 family Marinifilaceae 1 0 1573805 genus 2060722 0 1 1509 1717717 0 Marinifilaceae bacterium SPP2 species 1 1509 1970190 0 Salinivirgaceae family 1 3 935 1 1970191 0 Salinivirga genus 1 2 934 1 1 933 species Salinivirga cyanobacteriivorans 0 1307839 4 3 929 Marinilabiliaceae family 1 558415 0 6 2 925 Alkalitalea genus 1 1193324 0 0 889453 species Alkalitalea saponilacus 919 1 56 15954 100 171549 0 Bacteroidales order 1 815 0 Bacteroidaceae family 1 11 4020 4 4016 10 45 816 0 1 Bacteroides genus 492 1 Bacteroides thetaiotaomicron species 818 0 1 889 Bacteroides fragilis species 817 0 1 406 0 1796613 species Bacteroides caecimuris 290053 0 Bacteroides helcogenes species 305 1 Bacteroides zoogleoformans species 28119 0 1 187 Bacteroides ovatus species 28116 0 477 1 0 246787 species Bacteroides cellulosilyticus 1 545 1 407 0 47678 species Bacteroides caccae 1 263 Bacteroides heparinolyticus species 28113 0 no rank 185291 0 352 1 Bacteroidales bacterium CF species 1400053 0 1 352 7 1146 7 1 Tannerellaceae family 2005525 0 3 513 1 195950 0 Tannerella genus 1 no rank 2620507 0 220 1 Tannerella sp. oral taxon HOT-286 species 712710 0 1 220 species Tannerella forsythia 0 28112 292 1 626 3 1 375288 0 1 Parabacteroides genus 1 307 0 823 species Parabacteroides distasonis 318 1 2649774 0 no rank Parabacteroides sp. CT06 species 2025876 0 1 318 family 2005519 0 2 190 2 2 190 Barnesiella genus 1 397864 0 0 397865 species Barnesiella viscericola 188 1 family 0 2005520 1537 5 5 2 411 Proteiniphilum genus 1 294702 0 1 406 1642647 0 Proteiniphilum saccharofermentans species 1 242 genus 0 307628 0 1642646 species Petrimonas mucosa 1 242 1784836 0 1 Fermentimonas genus 884 2 9 1 875 Fermentimonas caenicola species 1562970 0 2 452 0 1853231 family 0 283168 1 genus Odoribacter 452 2 5 447 1 28118 0 Odoribacter splanchnicus species 2005523 0 family 2 853 6 2 853 Paludibacter genus 1 346096 0 1 847 Paludibacter propionicigenes species 185300 0 Rikenellaceae family 1 171550 0 1 5 476 Alistipes genus 1 239759 0 5 2 260 species Alistipes finegoldii 0 214856 1 255 Mucinivorans genus 1 1611681 0 4 2 215 0 1433126 species Mucinivorans hirudinis 211 1 Porphyromonadaceae family 1 171551 0 9 4 619 1 genus Porphyromonas 0 836 12 610 3 0 28123 species Porphyromonas asaccharolytica 204 1 1 394 837 0 Porphyromonas gingivalis species 3 3098 11 1 Prevotellaceae family 171552 0 10 3095 29 0 838 genus Prevotella 1 191 1 76123 0 Prevotella enoeca species species Prevotella denticola 0 28129 126 1 0 589436 species Prevotella fusca 227 1 28132 0 Prevotella melaninogenica species 1 326 1 440 no rank 0 2638335 1 440 0 652716 species Prevotella sp. oral taxon 299 1 313 839 0 Prevotella ruminicola species 1 884 0 28131 species Prevotella intermedia 52227 0 Prevotella dentalis species 268 1 291 1 0 1177574 species Prevotella jejuni 5 3111 no rank 333046 0 3 1519 genus 0 909656 1 603 0 376805 species Bacteroides salanitronis 440 1 species Bacteroides vulgatus 0 821 0 357276 species Bacteroides dorei 476 1 0 511434 1 genus Candidatus Azobacteroides 1592 2 6 1586 1 511435 0 Candidatus Azobacteroides pseudotrichonymphae species class 1937959 0 1447 3 1447 3 order 1936988 0 1937961 0 family 2 916 2 2 916 Haliscomenobacter genus 1 2349 0 0 2350 species Haliscomenobacter hydrossis 1 914 1 531 89374 0 family genus 1007 0 1 531 Saprospira grandis species 1008 0 1 531 202914 153 116 0 117743 1 class Flavobacteriia 0 200644 1 order Flavobacteriales 202798 152 239 0 49546 family Flavobacteriaceae 1 108 164514 721 0 363408 1 genus Nonlabens 7141 5 178 1 1840 0 319236 species Nonlabens sediminis 2615035 0 no rank 3464 2 1 1944 species Nonlabens sp. MIC269 0 1476901 species Nonlabens sp. MB-3u-79 0 2058134 1520 1 species Nonlabens dokdonensis 0 328515 1 1659 93 4 9248 genus Lacinutrix 1 0 291183 6229 2 0 2647285 no rank 2057808 0 Lacinutrix sp. Bg11-31 species 3083 1 1 3146 983544 0 Lacinutrix sp. 5H-3-7-4 species 1486034 0 Lacinutrix venerupis species 1 2926 225842 0 1 Formosa genus 3934 3 14 3920 2 0 2644710 no rank Formosa sp. Hel1_33_131 species 1336794 0 1 1611 1 2309 0 1336795 species Formosa sp. Hel3_A1_48 1 2 2160 genus Psychroflexus 1 0 83612 2159 1 57029 0 Psychroflexus torquis species genus 2700084 0 4058 1 1 4058 0 1850246 species Lutibacter sp. LPB0138 2 3060 2 0 1649495 genus Seonamhaeicola 1 no rank 0 2622645 1 3058 0 1936081 species Seonamhaeicola sp. S2-3 1 3058 3 2249 5 0 111500 genus Muricauda 1 1 799 516051 0 Muricauda lutaonensis species 1 1445 species Muricauda ruestringensis 0 111501 1 genus Croceibacter 0 216431 1 2248 2 species Croceibacter atlanticus 0 313588 1 2247 6 18655 111 52959 0 Polaribacter genus 1 4228 1 996801 0 Polaribacter reichenbachii species Polaribacter vadi species 1774273 0 4217 1 no rank 0 196858 3 10099 1 3814 313598 0 Polaribacter sp. MED152 species 1 2930 2058137 0 Polaribacter sp. ALD11 species 1529069 0 Polaribacter sp. BM10 species 1 3355 no rank 61432 0 2 3096 548 1 Flavobacteriaceae bacterium 3519-10 species 531844 0 1150389 0 Flavobacteriaceae bacterium UJ101 species 1 2548 2574 2 1 0 1518147 1 genus Wenyingzhuangia 2573 1 0 1790137 species Wenyingzhuangia fucanilytica 14 2 3595 genus Lutibacter 1 0 358023 species Lutibacter profundi 0 1622118 1 3581 33 5 4868 genus Gramella 1 0 292691 837 1 0 1486245 species Gramella flava species Gramella sp. LPB0144 0 1913577 1 1329 Gramella sp. SH35 species 2126553 0 1 1152 species Gramella forsetii 0 411153 1 1517 Maribacter genus 1 252356 0 88 5 7711 2615042 0 no rank 3 6385 1 1785 Maribacter sp. HTCC2170 species 313603 0 2387 1 Maribacter sp. 1_2014MBL_MicDiv species 1644130 0 1836467 0 Maribacter sp. T28 species 1 2213 1238 1 Maribacter cobaltidurans species 1178778 0 4918 5 96 0 76831 1 genus Myroides 1267 1 0 76832 species Myroides odoratimimus 1227 1 Myroides profundi species 480520 0 no rank 0 2642485 2328 2 1 1192 0 1458492 species Myroides sp. ZB35 1136 1 1583100 0 Myroides sp. A21 species 1 2002 genus 393005 0 Tamlana sp. UJ94 species 2069432 0 1 2002 261827 0 1 Algibacter genus 3231 2 5 1 3226 Algibacter alginicilyticus species 1736674 0 1 1087 0 389486 genus 0 2648869 no rank 1 1087 species Sediminicola sp. YIK13 0 1453352 1087 1 1 Aequorivita genus 153265 0 1 1516 2 1 1515 species Aequorivita sublithincola 0 101385 400 2 1 252306 0 1 Robiginitalea genus 0 252307 species Robiginitalea biformata 1 399 genus 0 1176327 1010 1 1 1010 0 2636237 no rank Aureitalea sp. RR4-38 species 2094025 0 1 1010 1 2368 1209327 0 genus 1 2368 0 1803846 species Flavivirga eckloniae genus 112040 0 762 1 1 762 63186 0 Zobellia galactanivorans species 5 12407 45 104267 0 Tenacibaculum genus 1 species Tenacibaculum jejuense 0 584609 1 3999 2439 1 species Tenacibaculum dicentrarchi 0 669041 1 3413 0 1850252 species Tenacibaculum todarodis 0 107401 species Tenacibaculum maritimum 1 2511 0 336276 genus 1 2486 2486 1 no rank 2615019 0 0 2058135 species Olleya sp. Bg11-27 1 2486 1 1784 genus 143222 0 2633436 0 no rank 1 1784 1 1784 species Salegentibacter sp. T436 0 1729720 8837 4 28 104264 0 1 Cellulophaga genus 0 76594 species Cellulophaga baltica 1 2924 3039 1 species Cellulophaga lytica 0 979 2846 1 59600 0 Cellulophaga algicola species genus Siansivirga 1 0 1204360 1 2 2678 species Siansivirga zeaxanthinifaciens 0 762954 1 2677 30 3 5736 Winogradskyella genus 1 286104 0 5706 2 no rank 0 2615021 2433 1 1936080 0 Winogradskyella sp. J14-2 species 754409 0 Winogradskyella sp. PG-2 species 3273 1 genus 417127 0 2097 1 398743 0 Zunongwangia profunda species 1 2097 genus Dokdonia 1 0 326319 36 4 5078 3280 2 no rank 2615033 0 1 1686 species Dokdonia sp. 4H-3-7-5 0 983548 species Dokdonia sp. MED134 0 313590 1 1594 326320 0 Dokdonia donghaensis species 1 1762 genus Arenibacter 1 0 178469 1 2 1377 1376 1 Arenibacter algicola species 616991 0 1016 0 1 Capnocytophaga genus 10789 15 114 45243 0 Capnocytophaga haemolytica species 1 418 1250 1 species Capnocytophaga sputigena 0 1019 species Capnocytophaga cynodegmi 0 28189 1 1092 0 327575 species Capnocytophaga leadbetteri 513 1 1 547 1018 0 Capnocytophaga ochracea species 1 575 0 1017 species Capnocytophaga gingivalis species Capnocytophaga stomatis 0 1848904 848 1 0 2640652 no rank 6 4160 0 1316596 species Capnocytophaga sp. oral taxon 878 834 1 1 826 1945657 0 Capnocytophaga sp. H2931 species 1 840 1945658 0 Capnocytophaga sp. H4358 species 0 1316593 species Capnocytophaga sp. oral taxon 864 556 1 474 1 Capnocytophaga sp. oral taxon 323 species 1705617 0 species Capnocytophaga sp. ChDC OS43 0 209053 1 630 0 28188 species Capnocytophaga canimorsus 1 1272 51 18633 9 1 Flavobacterium genus 237 0 species Flavobacterium commune 0 1306519 1 1601 1146 1 Flavobacterium crassostreae species 1763534 0 96345 0 Flavobacterium psychrophilum species 1 1818 species Flavobacterium branchiophilum 0 55197 1 1806 0 996 species Flavobacterium columnare 1 3672 4378 1 986 0 Flavobacterium johnsoniae species 1656 1 Flavobacterium gilvum species 1492737 0 1 2505 species Flavobacterium indicum 0 312277 no rank 0 313602 3 2469 1978 2 19 0 336809 1 genus Candidatus Sulcia 336810 0 Candidatus Sulcia muelleri species 1959 1 1 491 0 1940138 genus Candidatus Walczuchella monophlebidarum species 1415657 0 1 491 family Blattabacteriaceae 1 0 39782 6 10 8445 8439 9 47 34098 0 1 Blattabacterium genus 1 1006 164514 0 Blattabacterium punctulatus species 1 1112 0 1653831 species Blattabacterium cuenoti no rank 0 2647581 6 6274 624186 0 Blattabacterium sp. (Blattella germanica) species 1147 1 0 1316444 species Blattabacterium sp. (Nauphoeta cinerea) 1127 1 1 1005 species Blattabacterium sp. (Periplaneta americana) 0 367488 0 1186051 species Blattabacterium sp. (Blaberus giganteus) 1216 1 species Blattabacterium sp. (Mastotermes darwiniensis) 0 39768 847 1 species Blattabacterium sp. (Blatta orientalis) 0 367806 1 932 1 3 1432 Crocinitomicaceae family 1 1853230 0 0 332102 genus Fluviicola 1 2 1431 8 0 191579 species Fluviicola taffensis 1423 1 0 1755828 1 family Ichthyobacteriaceae 1209 3 8 0 1755829 genus Ichthyobacterium 1 2 1201 32 1169 1 species Ichthyobacterium seriolicida 0 242600 family 2762318 0 23267 21 6 7787 63 0 308865 genus Elizabethkingia 1 species Elizabethkingia meningoseptica 0 238 1 1152 species Elizabethkingia anophelis 0 1117645 2697 1 Elizabethkingia genomosp. 3 species 1756149 0 1 1210 1 1660 172045 0 Elizabethkingia miricola species 1756150 0 Elizabethkingia genomosp. 4 species 1 1005 0 1013 genus 1 1001 1 1001 0 1014 species Weeksella virosa 4 2 862 genus Ornithobacterium 1 0 28250 species Ornithobacterium rhinotracheale 0 28251 1 858 5 2 2025 genus Riemerella 1 0 34084 1 2020 34085 0 Riemerella anatipestifer species 0 2782232 no rank 10 11592 0 59732 genus Chryseobacterium 1 9 11021 79 0 558152 species Chryseobacterium piperi 1 1411 species Chryseobacterium glaciei 0 1685010 1 2188 species Chryseobacterium gallinarum 0 1324352 1 954 1 2157 Chryseobacterium indologenes species 253 0 517 1 species Chryseobacterium camelliae 0 1265445 no rank 0 2593645 3 3715 1284 1 species Chryseobacterium sp. StRB126 0 878220 2015076 0 Chryseobacterium sp. T16E-39 species 1 1437 994 1 0 1721091 species Chryseobacterium sp. IHB B 17019 571 1 genus 0 2782228 1 571 536441 0 Chryseobacterium taklimakanense species family 0 1333713 2 1214 267986 0 Owenweeksia genus 1 2 1214 32 1 1182 0 253245 species Owenweeksia hongkongensis 0 246874 family Cryomorphaceae 1 9 19 1652 7 1 order Bacteroidetes Order II. Incertae sedis 0 1100069 6 1633 10 563843 0 Rhodothermaceae family 1 9 2 556 genus Rhodothermus 1 0 29548 0 29549 species Rhodothermus marinus 1 547 no rank 0 1196022 1 571 1779382 0 Rhodothermaceae bacterium RA species 571 1 genus Salinibacter 1 0 146918 3 2 496 1 493 146919 0 Salinibacter ruber species 4707 22 0 1090 phylum 4707 22 14 191410 0 1 Chlorobia class Chlorobiales order 1 191411 0 24 21 4693 0 191412 1 family Chlorobiaceae 4669 20 39 730 4 82 0 256319 1 genus Chlorobaculum 1 212 1097 0 Chlorobaculum tepidum species 0 274537 species Chlorobaculum limnaeum 228 1 1 208 species Chlorobaculum parvum 0 274539 274493 0 no rank 2453 8 1899 5 51 1091 0 1 Chlorobium genus 0 1092 species Chlorobium limicola 1 335 species Chlorobium phaeobacteroides 0 1096 1 863 0 337090 species Chlorobium chlorochromatii 448 1 1 202 0 1094 species Chlorobium phaeovibrioides 3 554 3 1 Pelodictyon genus 1099 0 1 188 0 1100 species Pelodictyon luteolum 1 363 species Pelodictyon phaeoclathratiforme 0 34090 genus Prosthecochloris 1 0 1101 62 5 990 2632826 0 no rank 685 3 1868325 0 Prosthecochloris sp. CIB 2401 species 257 1 species Prosthecochloris sp. HL-130-GSB 0 1974213 206 1 0 281093 species Prosthecochloris sp. GSB1 222 1 243 1 species Prosthecochloris aestuarii 0 1102 1 genus Chloroherpeton 0 100715 2 457 2 1 455 0 100716 species Chloroherpeton thalassium 4 559 0 65842 phylum 1 4 559 Fibrobacteria class 1 204430 0 218872 0 order 3 558 558 3 1 204431 0 1 Fibrobacteraceae family 0 832 1 genus Fibrobacter 557 2 4 553 1 species Fibrobacter succinogenes 0 833 phylum 0 142182 8 1853 219685 0 1 Gemmatimonadetes class 1853 8 9 219686 0 1 Gemmatimonadales order 1844 7 19 0 219687 1 family Gemmatimonadaceae 1825 6 11 1706036 0 1 Gemmatirosa genus 1042 2 5 species Gemmatirosa kalamazoonesis 0 861299 1037 1 1 Gemmatimonas genus 173479 0 16 772 3 1 414 Gemmatimonas aurantiaca species 173480 0 1 342 1379270 0 Gemmatimonas phototrophica species 1 phylum Proteobacteria 0 1224 351 1520507 2049 350 179227 176 0 28216 class Betaproteobacteria 1 32003 0 1 Nitrosomonadales order 11838 43 73 0 32011 1 family Methylophilaceae 4229 13 28 6 3 1216 Methylotenera genus 1 359407 0 359408 0 Methylotenera mobilis species 453 1 757 1 0 1055487 species Methylotenera versatilis 1679002 0 Candidatus Methylopumilus genus 1 3 1896 1 1581557 0 Candidatus Methylopumilus planktonicus species 1 1394 1581680 0 Candidatus Methylopumilus turicensis species 1 501 1 292 0 16 genus 0 2630143 no rank 292 1 292 1 species Methylophilus sp. TWE2 0 1662285 239 2 1 0 404 1 genus Methylobacillus 1 238 species Methylobacillus flagellatus 0 405 558 3 9 0 81682 1 genus Methylovorus no rank 0 2634027 276 1 276 1 Methylovorus sp. MP688 species 887061 0 Methylovorus glucosotrophus species 266009 0 273 1 32 830 5 1 family Sterolibacteriaceae 0 2008793 10 432 2 1 genus Sulfuritalea 0 1054211 422 1 0 748811 species Sulfuritalea hydrogenivorans Methyloversatilis genus 1 378210 0 5 2 366 no rank 0 2639971 361 1 0 1842540 species Methyloversatilis sp. RAC08 361 1 90627 0 Gallionellaceae family 1 5 711 25 0 96 genus Gallionella 1 2 375 8 370405 0 Gallionella capsiferriformans species 367 1 2 311 4 0 314343 genus Sideroxydans 1 0 63745 species Sideroxydans lithotrophicus 1 307 4 680 family 0 2772226 0 935200 1 genus Sulfuricella 403 2 1 1 402 649841 0 Sulfuricella denitrificans species 2 277 4 1778653 0 Sulfuriferula genus 1 no rank 0 2637784 1 273 1 273 1985873 0 Sulfuriferula sp. AH1 species 2008790 0 Thiobacillaceae family 1 3 326 7 2 2 319 genus Thiobacillus 1 0 919 36861 0 Thiobacillus denitrificans species 317 1 12 4989 26 206379 0 Nitrosomonadaceae family 1 0 35798 genus Nitrosospira 1 4 769 6 species Nitrosospira briensis 0 35799 1 246 species Nitrosospira lacus 0 1288494 287 1 1 230 Nitrosospira multiformis species 1231 0 31 7 4194 Nitrosomonas genus 1 914 0 1 326 0 915 species Nitrosomonas europaea species Nitrosomonas ureae 0 44577 688 1 1 907 species Nitrosomonas communis 0 44574 1671 2 no rank 0 2609265 0 153948 species Nitrosomonas sp. AL212 919 1 species Nitrosomonas sp. Is79A3 0 261292 1 752 1 571 916 0 Nitrosomonas eutropha species 9033 12 119066 0 no rank 1 147 genus 0 189384 species Candidatus Tremblaya princeps 0 189385 1 147 47 6940 6 1 genus Kinetoplastibacterium 0 33055 233181 0 Kinetoplastibacterium blastocrithidii species 1134 1 0 994695 species Candidatus Kinetoplastibacterium galatii 1 1100 994696 0 Candidatus Kinetoplastibacterium oncopeltii species 1246 1 33056 0 Candidatus Kinetoplastibacterium crithidii species 1634 1 species Candidatus Kinetoplastibacterium desouzaii 0 994692 1 1779 327159 0 Candidatus Accumulibacter genus 1 2 437 8 429 1 Candidatus Accumulibacter phosphatis species 327160 0 genus 1301080 0 1 312 1 312 1160784 0 Candidatus Nasuia deltocephalinicola species 0 1381133 1 genus Candidatus Profftella 1197 2 3 0 669502 species Candidatus Profftella armatura 1194 1 6079 22 75 0 206389 1 order Rhodocyclales 2008794 0 1 Zoogloeaceae family 4428 12 79 74 6 2313 genus Thauera 1 0 33057 0 96773 species Thauera chlorobenzoica 1 419 385 1 species Thauera aromatica 0 59405 species Thauera humireducens 0 1134435 1 382 0 2609274 no rank 1053 2 1 496 0 2005884 species Thauera sp. K11 1 557 85643 0 Thauera sp. MZ1T species genus Azoarcus 1 0 12960 51 5 2036 0 2067960 species Azoarcus sp. SY39 1 441 1121 2 0 2629479 no rank 1 592 species Azoarcus sp. CIB 0 198107 748247 0 Azoarcus sp. KH32C species 1 529 418699 0 Azoarcus olearius species 1 423 3 3 406 Azonexaceae family 1 2008795 0 8 2 403 Dechloromonas genus 1 73029 0 0 259537 species Dechloromonas aromatica 395 1 family Rhodocyclaceae 1 0 75787 18 6 1170 399 2 12 146937 0 1 Azospira genus species Azospira oryzae 0 146939 387 1 no rank 75788 0 296 1 296 1 0 1898103 species Rhodocyclaceae bacterium 551759 0 Aromatoleum genus 1 2 457 5 species Aromatoleum aromaticum 0 551760 1 452 2 1136 0 33809 no rank 1 595 beta proteobacterium CB species 543913 0 1 541 species Betaproteobacteria bacterium GR16-43 0 1904640 0 206351 order Neisseriales 1 37 10727 81 23 6995 35 0 481 family Neisseriaceae 1 6 664 2 1 Snodgrassella genus 1193515 0 1196083 0 Snodgrassella alvi species 658 1 79 3555 12 1 genus Neisseria 0 482 species Neisseria mucosa 0 488 1 181 Neisseria elongata species 495 0 212 1 species Neisseria sp. 10023 0 1853278 202 1 1042 1 487 0 Neisseria meningitidis species 2 442 no rank 2623750 0 1 218 species Neisseria sp. KEM232 0 655307 1853276 0 Neisseria sp. 10022 species 224 1 1 313 486 0 Neisseria lactamica species 258 1 species Neisseria zoodegmatis 0 326523 28091 0 Neisseria weaveri species 314 1 1 334 485 0 Neisseria gonorrhoeae species 490 0 Neisseria sicca species 178 1 no rank 0 421605 1033 1 Neisseriaceae bacterium DSM 100970 species 2052837 0 1 1033 1 Eikenella genus 538 0 1 276 2 539 0 Eikenella corrodens species 1 275 1 genus Simonsiella 0 71 1 484 2 483 1 species Simonsiella muelleri 0 72 13 948 3 1 genus Vitreoscilla 0 59 0 2627922 no rank 630 1 630 1 Vitreoscilla sp. C1 species 96942 0 0 63 species Vitreoscilla filiformis 1 305 3651 13 65 0 1499392 1 family Chromobacteriaceae 2 442 21 0 885864 genus Jeongeupia 1 1 421 0 2619593 no rank species Jeongeupia sp. USM3 0 1906741 1 421 2 2 359 genus Aquaspirillum 1 0 187 357 1 0 2620219 no rank 1 357 species Aquaspirillum sp. LM1 0 1938604 168470 0 Laribacter genus 1 2 365 14 1 351 species Laribacter hongkongensis 0 168471 420 2 1 568394 0 1 Pseudogulbenkiania genus 419 1 2642558 0 no rank 419 1 748280 0 Pseudogulbenkiania sp. NH8B species 2000 4 no rank 0 90153 535 0 Chromobacterium genus 1 4 2000 33 1 881 0 1108595 species Chromobacterium vaccinii species Chromobacterium violaceum 0 536 560 1 526 1 no rank 2641838 0 2059672 0 Chromobacterium sp. ATCC 53434 species 1 526 1 Burkholderiales order 80840 0 1138 140238 233 1 family Oxalobacteraceae 0 75682 90 12329 27 202907 0 Collimonas genus 1 4 1963 50 576 1 0 279113 species Collimonas pratensis 1 559 0 158899 species Collimonas fungivorans Collimonas arenae species 279058 0 1 778 0 303379 genus 2 655 species Herminiimonas arsenitoxidans 0 1809410 1 322 Herminiimonas arsenicoxydans species 204773 0 1 333 1 genus Massilia 0 149698 78 2904 6 632 1 Massilia putida species 1141883 0 1 565 Massilia sp. ZMN-3 species 2072590 0 1101 2 2609279 0 no rank 474 1 1678028 0 Massilia sp. NR 4-1 species 0 1707785 species Massilia sp. WG5 1 627 1 528 0 2045208 species Massilia sp. B2 963 0 1 Herbaspirillum genus 3445 6 33 1 1088 Herbaspirillum hiltneri species 341045 0 80842 0 Herbaspirillum rubrisubalbicans species 1 443 Herbaspirillum frisingense species 92645 0 1 563 no rank 2624150 0 476 1 476 1 2025949 0 Herbaspirillum sp. meg3 species species Herbaspirillum seropedicae 0 964 842 1 846 0 genus 1 252 847 0 Oxalobacter formigenes species 1 252 1 genus Janthinobacterium 0 29580 68 3020 7 4 1866 no rank 2610881 0 492 1 1236179 0 Janthinobacterium sp. B9-8 species 1 506 1938606 0 Janthinobacterium sp. LM6 species 291 1 375286 0 Janthinobacterium sp. Marseille species 1644131 0 Janthinobacterium sp. 1_2014MBL_MicDiv species 577 1 477 1 species Janthinobacterium agaricidamnosum 0 55508 609 1 368607 0 Janthinobacterium svalbardensis species 744 2 0 80841 no rank 1 443 species Burkholderiales bacterium YL45 0 1834205 301 1 0 1469502 species Burkholderiales bacterium GJ-E10 17 6929 224471 0 no rank [Polyangium] brachysporum species 413882 0 947 1 7 1521 2 1 genus Roseateles 0 93681 Roseateles depolymerans species 76731 0 1 1514 318147 0 1 Paucibacter genus 682 2 2 no rank 0 2642959 680 1 species Paucibacter sp. KCTC 42545 0 1768242 680 1 12 507 2 1 Methylibium genus 316612 0 species Methylibium petroleiphilum 0 105560 1 495 7 2 554 Rhizobacter genus 1 212743 0 Rhizobacter gummiphilus species 946333 0 547 1 627 2 21 0 32012 1 genus Thiomonas 606 1 species Thiomonas intermedia 0 926 1 Leptothrix genus 88 0 17 589 2 1 572 0 34029 species Leptothrix cholodnii Mitsuaria genus 1 65047 0 9 2 839 830 1 no rank 0 2648776 species Mitsuaria sp. 7 0 1658665 1 830 663 2 7 28067 0 1 Rubrivivax genus species Rubrivivax gelatinosus 0 28068 656 1 58 24705 220 80864 0 Comamonadaceae family 1 8 3 720 Ottowia genus 1 219181 0 269 1 2645081 0 no rank 269 1 species Ottowia sp. oral taxon 894 0 1658672 1 443 Ottowia sp. KADR8-3 species 2109914 0 Melaminivora genus 1 1649468 0 2 2 390 no rank 2641902 0 1 388 2109913 0 Melaminivora sp. SC2-9 species 388 1 80865 0 1 Delftia genus 2587 5 54 1348 2 0 2613839 no rank 1920191 0 Delftia sp. HK171 species 1 602 742013 0 Delftia sp. Cs1-4 species 746 1 80866 0 Delftia acidovorans species 568 1 617 1 0 180282 species Delftia tsuruhatensis 1008 2 8 174951 0 1 Ramlibacter genus 94132 0 Ramlibacter tataouinensis species 1000 1 genus Alicycliphilus 1 0 201096 2 2 456 1 454 179636 0 Alicycliphilus denitrificans species 329 1 genus 2678886 0 329 1 2116657 0 Melaminivora sp. SC2-7 species 9 5 1611 Rhodoferax genus 1 28065 0 1 308 Rhodoferax saidenbachensis species 1484693 0 0 1842727 species Rhodoferax koreense 601 1 1 331 0 81479 species Rhodoferax antarcticus 0 192843 species Rhodoferax ferrireducens 1 362 Polaromonas genus 1 52972 0 4 3 1964 0 216465 species Polaromonas naphthalenivorans 1 649 1 1311 no rank 2638319 0 296591 0 Polaromonas sp. JS666 species 1311 1 0 364316 genus Verminephrobacter 1 2 1051 2 species Verminephrobacter eiseniae 0 364317 1049 1 0 1436289 genus Candidatus Symbiobacter 1 2 394 2 392 1 0 1436290 species Candidatus Symbiobacter mobilis genus Acidovorax 1 0 12916 115 9 3198 0 80869 species Acidovorax citrulli 455 1 1 228 553814 0 Acidovorax sp. NA3 species 0 80867 species Acidovorax avenae 562 1 337 1 0 721785 species Acidovorax ebreus 4 1501 0 2684926 no rank 0 232721 species Acidovorax sp. JS42 344 1 1858609 0 Acidovorax sp. T1 species 1 520 312 1 1842533 0 Acidovorax sp. RAC01 species 0 358220 species Acidovorax sp. KKS102 1 325 genus 238749 0 392 1 species Diaphorobacter polyhydroxybutyrativorans 0 1546149 1 392 6 2373 4 1 genus Comamonas 0 283 0 285 species Comamonas testosteroni 1 800 1082851 0 Comamonas serinivorans species 871 1 0 225992 species Comamonas kerstersii 1 696 0 34072 1 genus Variovorax 5117 5 68 0 436515 species Variovorax boronicumulans 627 1 1342 2 663243 0 no rank 2126319 0 Variovorax sp. PMC12 species 670 1 Variovorax sp. PAMC 28711 species 1795631 0 1 672 Variovorax paradoxus species 34073 0 1 3080 1 genus Hydrogenophaga 0 47420 10 1394 4 1009 2 0 2610897 no rank 1 501 Hydrogenophaga sp. PBC species 795665 0 species Hydrogenophaga sp. RAC07 0 1842537 508 1 375 1 1763535 0 Hydrogenophaga crassostreae species 3 570 3 1 genus Limnohabitans 0 665874 no rank 2626134 0 567 2 1 300 species Limnohabitans sp. 103DPR2 0 1678129 267 1 1678128 0 Limnohabitans sp. 63ED37-2 species 1 265 2 1 Simplicispira genus 352450 0 Simplicispira sp. SC1-8 species 2109915 0 1 264 666 2 2490452 0 genus 0 1458425 species Comamonadaceae bacterium A1 1 327 species Comamonadaceae bacterium B1 0 1458426 339 1 0 506 family Alcaligenaceae 1 44 20342 87 484 2 2 0 90243 1 genus Oligella 482 1 species Oligella urethralis 0 90245 1 Orrella genus 1921582 0 6 385 2 0 1851544 species Orrella dioscoreae 379 1 14 523 2 1 Paenalcaligenes genus 1100891 0 643674 0 Paenalcaligenes hominis species 1 509 0 359336 1 genus Castellaniella 391 2 9 75697 0 Castellaniella defragrans species 1 382 1606 2 9 0 507 1 genus Alcaligenes 1597 1 species Alcaligenes faecalis 0 511 0 1472344 genus Basilea 1 2 606 3 0 1472345 species Basilea psittacipulmonis 1 603 517 0 1 Bordetella genus 7908 17 195 473 1 1416806 0 Bordetella genomosp. 8 species 414 1 species Bordetella flabilis 0 463014 1 533 519 0 Bordetella parapertussis species 494 1 0 463025 species Bordetella bronchialis 0 521 species Bordetella avium 247 1 520 0 Bordetella pertussis species 582 1 0 2630031 no rank 354 1 1 354 1697043 0 Bordetella sp. H567 species 628 1 species Bordetella holmesii 0 35814 Bordetella genomosp. 9 species 1416803 0 1 310 1 464 Bordetella genomosp. 13 species 463040 0 Bordetella bronchiseptica species 518 0 1 1043 366 1 Bordetella pseudohinzii species 1331258 0 566 1 463024 0 Bordetella genomosp. 6 species Bordetella petrii species 94624 0 1 491 427 1 103855 0 Bordetella hinzii species Bordetella trematum species 123899 0 1 321 12 750 3 1 Advenella genus 290425 0 1 305 0 310575 species Advenella kashmirensis species Advenella mimigardefordensis 0 302406 1 433 genus Pusillimonas 1 0 305976 4 2 421 417 1 2640016 0 no rank species Pusillimonas sp. T7-7 0 1007105 1 417 29574 0 Taylorella genus 1 3 2121 18 Taylorella asinigenitalis species 84590 0 1 1020 29575 0 Taylorella equigenitalis species 1083 1 222 0 1 Achromobacter genus 5060 6 90 Achromobacter denitrificans species 32002 0 1031 1 1 540 species Achromobacter insolitus 0 217204 1 867 217203 0 Achromobacter spanius species 1 2002 species Achromobacter xylosoxidans 0 85698 2626865 0 no rank 1 530 1 530 species Achromobacter sp. AONIH1 0 1758194 Burkholderiaceae family 1 119060 0 268 84 74051 281 1 genus 2571159 0 1 281 412963 0 Paraburkholderia rhizoxinica species 1 Cupriavidus genus 106589 0 138 8387 9 68895 0 Cupriavidus basilensis species 1285 1 1 973 species Cupriavidus sp. USMAA1020 0 367825 891 1 Cupriavidus necator species 106590 0 1 542 species Cupriavidus pinatubonensis 0 248026 1682 1 species Cupriavidus metallidurans 0 119219 82541 0 Cupriavidus gilardii species 1 589 0 2640874 no rank 2 2287 1294 1 0 876364 species Cupriavidus sp. USMAA2-4 993 1 species Cupriavidus sp. USMAHM13 0 1389192 1827195 0 genus 1 608 1 608 0 758793 species Burkholderia sp. RPE64 genus Pandoraea 1 0 93217 89 10 6005 334 1 Pandoraea sputorum species 93222 0 729 1 93219 0 Pandoraea norimbergensis species 445709 0 Pandoraea thiooxydans species 1 378 392 1 species Pandoraea faecigallinarum 0 656179 774 1 0 93220 species Pandoraea pnomenusa species Pandoraea pulmonicola 0 93221 1711 1 Pandoraea oxalativorans species 573737 0 641 1 1 470 0 93218 species Pandoraea apista 487 1 Pandoraea vervacti species 656178 0 0 48736 1 genus Ralstonia 4374 5 44 Ralstonia solanacearum species 305 0 2402 1 603 1 0 105219 species Ralstonia mannitolilytica 1 838 species Ralstonia pickettii 0 329 0 190721 species Ralstonia insidiosa 487 1 1162 41 43820 Burkholderia genus 1 32008 0 1235 1 0 28095 species Burkholderia gladioli 19070 19 species group 87882 0 0 60552 species Burkholderia vietnamiensis 1182 1 Burkholderia dolosa species 152500 0 1 477 Burkholderia cenocepacia species 95486 0 2497 1 488446 0 Burkholderia latens species 1 965 841 1 species Burkholderia stabilis 0 95485 546 1 species Burkholderia stagnalis 0 1503054 490 1 species Burkholderia pseudomultivorans 0 1207504 1 1798 Burkholderia lata species 482957 0 [Pseudomonas] mesoacidophila species 265293 0 515 1 species Burkholderia metallica 0 488729 1 430 292 0 Burkholderia cepacia species 1 2934 1 1836 Burkholderia ubonensis species 101571 0 511 1 Burkholderia seminalis species 488731 0 1271 1 87883 0 Burkholderia multivorans species species Burkholderia diffusa 0 488732 1 475 0 152480 species Burkholderia ambifaria 944 1 363 1 0 60550 species Burkholderia pyrrocinia Burkholderia territorii species 1503055 0 408 1 488447 0 Burkholderia contaminans species 587 1 5744 11 no rank 0 2613784 species Burkholderia sp. CCGE1001 0 640510 1 570 species Burkholderia sp. RPE67 0 758796 1 757 1 315 0 1795874 species Burkholderia sp. PAMC 28687 species Burkholderia sp. Bp7605 0 1740163 410 1 1 502 species Burkholderia sp. KJ006 0 416344 324 1 1795043 0 Burkholderia sp. PAMC 26561 species species Burkholderia sp. HB1 0 1678678 1 648 species Burkholderia sp. 2002721687 0 1468409 1 428 species Burkholderia sp. CCGE1003 0 640512 1 587 Burkholderia sp. YI23 species 1097668 0 1 755 1 448 species Burkholderia sp. Bp5365 0 1740162 7 14481 0 111527 species group Burkholderia sp. MSMB0266 species 1637837 0 729 1 species Burkholderia pseudomallei 0 28450 1 8273 0 1637831 species Burkholderia sp. MSMB617WGS 739 1 1460 1 0 13373 species Burkholderia mallei Burkholderia thailandensis species 57975 0 1464 1 Burkholderia sp. MSMB0852 species 1637841 0 860 1 1 956 342113 0 Burkholderia oklahomensis species Burkholderia plantarii species 41899 0 1 712 337 0 Burkholderia glumae species 1416 1 8252 12 124 1822464 0 1 Paraburkholderia genus 638 1 0 2615204 no rank 0 1926494 species Paraburkholderia sp. SOS3 1 638 1 615 0 2026199 species Paraburkholderia aromaticivorans Paraburkholderia sprentiae species 948107 0 1 568 1 1232 species Paraburkholderia caribensis 0 75105 1 651 Paraburkholderia xenovorans species 36873 0 1 724 0 148447 species Paraburkholderia phymatum Paraburkholderia phenoliruptrix species 252970 0 1 606 1 1105 261302 0 Paraburkholderia phytofirmans species 651 1 134537 0 Paraburkholderia fungorum species 578 1 311230 0 Paraburkholderia terrae species 1 760 Paraburkholderia hospita species 169430 0 2056 4 43 44013 0 1 Polynucleobacter genus 0 576611 species Polynucleobacter asymbioticus 1 914 0 576610 species Polynucleobacter necessarius 490 1 species Polynucleobacter duraquae 0 1835254 1 609 0 28211 1 class Alphaproteobacteria 602018 570 508 204441 0 1 Rhodospirillales order 35750 67 209 family Rhodospirillaceae 1 0 41295 297 31 22815 1612157 0 1 Pararhodospirillum genus 598 2 11 1 587 species Pararhodospirillum photometricum 0 1084 1 Nitrospirillum genus 1543705 0 6 1113 2 28077 0 Nitrospirillum amazonense species 1107 1 genus Rhodospirillum 1 0 1081 26 3 1844 34018 0 Rhodospirillum centenum species 1 1055 1 763 0 1085 species Rhodospirillum rubrum 933 2 12 0 1182780 1 genus Magnetospira 1 921 no rank 2685734 0 1 921 1288970 0 Magnetospira sp. QH-2 species 614 2 4 0 1804663 1 genus Haematospirillum Haematospirillum jordaniae species 1549855 0 1 610 genus Azospirillum 1 0 191 161 5 5838 1 2082 0 193 species Azospirillum lipoferum 1 579 0 1226968 species Azospirillum humicireducens 1 1199 528244 0 Azospirillum thiophilum species 1 1817 192 0 Azospirillum brasilense species 1 Niveispirillum genus 1543704 0 13 711 2 0 1612173 species Niveispirillum cyanobacteriorum 698 1 34 1214 2 1 genus Tistrella 0 171436 1 1180 0 171437 species Tistrella mobilis 1 genus Candidatus Endolissoclinum 0 1263978 7 3380 2 1 3373 Candidatus Endolissoclinum faulkneri species 1263979 0 2162 3 59 168934 0 1 Thalassospira genus 220697 0 Thalassospira xiamenensis species 1 1056 1047 1 species Thalassospira sp. CSC3H3 0 2048283 5 4111 175 13134 0 Magnetospirillum genus 1 867 1 84159 0 Magnetospirillum magneticum species no rank 2617991 0 2 1948 Magnetospirillum sp. ME-1 species 1639348 0 997 1 1 951 species Magnetospirillum sp. XM-1 0 1663591 1121 1 Magnetospirillum gryphiswaldense species 55518 0 159 12726 35 1 Acetobacteraceae family 433 0 30 3 1515 Roseomonas genus 1 125216 0 781 1 257708 0 Roseomonas gilardii species 704 1 2617492 0 no rank 0 2018065 species Roseomonas sp. FDAARGOS_362 704 1 63 4148 8 1 genus Acetobacter 0 434 1 394 Acetobacter persici species 1076596 0 species Acetobacter oryzifermentans 0 1633874 447 1 388 1 Acetobacter senegalensis species 446692 0 1606 1 species Acetobacter pasteurianus 0 438 104102 0 Acetobacter tropicalis species 1 536 370 1 65959 0 Acetobacter pomorum species 1 344 subgenus 0 151157 1 344 species Acetobacter aceti 0 435 1855 5 57 0 1434011 1 genus Komagataeibacter 339 1 0 1177712 species Komagataeibacter medellinensis 33995 0 Komagataeibacter europaeus species 301 1 265960 0 Komagataeibacter nataicola species 479 1 1 679 28448 0 Komagataeibacter xylinus species 21 2 597 Gluconacetobacter genus 1 89583 0 0 33996 species Gluconacetobacter diazotrophicus 576 1 2 947 12 0 364409 genus Granulibacter 1 935 1 Granulibacter bethesdensis species 364410 0 Asaia genus 1 91914 0 7 2 358 91915 0 Asaia bogorensis species 1 351 18 851 3 1 genus Gluconobacter 0 441 1 570 442 0 Gluconobacter oxydans species 318683 0 Gluconobacter albidus species 263 1 1 genus Neoasaia 0 320496 2 257 2 1 255 species Neoasaia chiangmaiensis 0 320497 2 2 288 genus Parasaccharibacter 1 0 1602345 286 1 0 1510841 species Parasaccharibacter apium 1 Acidiphilium genus 522 0 48 1359 3 Acidiphilium cryptum species 524 0 1 643 668 1 62140 0 Acidiphilium multivorum species 6 2 392 genus Kozakia 1 0 153497 153496 0 Kozakia baliensis species 386 1 34 20 8320 order Caulobacterales 1 0 204458 76892 0 Caulobacteraceae family 1 19 8286 147 681 2 17 20 0 1 Phenylobacterium genus 664 1 0 284016 species Phenylobacterium zucineum 1 498 no rank 0 81440 498 1 species Caulobacteraceae bacterium OTSz_A_272 0 1759059 genus Caulobacter 1 0 75 101 6 3650 0 88688 species Caulobacter segnis 603 1 Caulobacter vibrioides species 155892 0 1 1070 0 2648921 no rank 698 1 698 1 Caulobacter sp. K31 species 366602 0 1 587 Caulobacter henricii species 69395 0 1 591 0 69666 species Caulobacter mirabilis 7 2808 139 0 41275 genus Brevundimonas 1 495 1 0 74313 species Brevundimonas subvibrioides 0 2622653 no rank 1338 3 638 1 Brevundimonas sp. LM2 species 1938605 0 Brevundimonas sp. GW460-12-10-14-LB2 species 1827469 0 1 326 0 1532555 species Brevundimonas sp. DS20 1 374 588932 0 Brevundimonas naejangsanensis species 483 1 1 353 41276 0 Brevundimonas vesicularis species 2 502 16 0 76890 genus Asticcacaulis 1 486 1 Asticcacaulis excentricus species 78587 0 3609 6 order 2800060 0 53 6 3609 family Hyphomonadaceae 1 0 69657 16 1644 2 1 genus Hirschia 0 2723 species Hirschia baltica 0 2724 1628 1 85 0 Hyphomonas genus 1 3 1912 57 0 2630699 no rank 1 1265 Hyphomonas sp. Mor2 species 1906738 0 1 1265 species Hyphomonas neptunium 0 81032 590 1 0 204457 order Sphingomonadales 1 82 36818 172 41297 0 Sphingomonadaceae family 1 59 28259 364 504 1 genus 0 2685927 1 504 Sphingomonas sp. JJ-A5 species 1921510 0 39 1168 3 1 Sphingorhabdus genus 1434046 0 0 2614947 no rank 1129 2 1 590 2077182 0 Sphingorhabdus sp. YGSMI21 species species Sphingorhabdus sp. M41 0 1806885 539 1 1 Blastomonas genus 150203 0 12 541 2 no rank 2626550 0 529 1 1 529 1842535 0 Blastomonas sp. RAC04 species 1 530 0 2709685 genus 530 1 species Sphingorhabdus flavimaris 0 266812 3 2 1230 Zymomonas genus 1 541 0 1227 1 species Zymomonas mobilis 0 542 102 10 5075 Sphingopyxis genus 1 165697 0 507 1 0 267128 species Sphingopyxis granuli 467 1 1515612 0 Sphingopyxis fribergensis species 1 402 Sphingopyxis terrae species 33052 0 117207 0 Sphingopyxis alaskensis species 407 1 0 2614943 no rank 4 2381 0 1357916 species Sphingopyxis sp. QXT-31 1 553 species Sphingopyxis sp. 113P3 0 292913 1 396 988 1 species Sphingopyxis sp. LPB0140 0 1913578 species Sphingopyxis sp. MG 0 1866325 444 1 1 809 33050 0 Sphingopyxis macrogoltabida species 268 6092 15 1 genus Sphingobium 0 165695 no rank 0 2611147 2511 6 382 1 species Sphingobium sp. RAC03 0 1843368 484429 0 Sphingobium sp. YBL2 species 451 1 1 334 species Sphingobium sp. EP60837 0 1855519 448 1 species Sphingobium sp. TKS 0 1315974 406 1 407020 0 Sphingobium sp. MI1205 species 0 627192 species Sphingobium sp. SYK-6 490 1 Sphingobium herbicidovorans species 76947 0 355 1 1 377 species Sphingobium chlorophenolicum 0 46429 720 1 0 13690 species Sphingobium yanoikuyae 369 1 Sphingobium hydrophobicum species 1673076 0 337 1 species Sphingobium cloacae 0 120107 332056 0 Sphingobium japonicum species 425 1 386 1 0 332055 species Sphingobium indicum 1 344 Sphingobium baderi species 1332080 0 9586 15 234 0 13687 1 genus Sphingomonas 528 1 0 1609977 species Sphingomonas hengshuiensis 0 93064 species Sphingomonas koreensis 1 545 1 497 species Sphingomonas melonis 0 152682 815 1708 2 1 Sphingomonas wittichii species 160791 0 Sphingomonas sp. DC-6 strain 1283312 0 893 1 517 1 0 1560345 species Sphingomonas panacis 1549858 0 Sphingomonas taxi species 1 531 4348 6 no rank 0 196159 species Sphingomonas sp. LM7 0 1938607 1 476 Sphingomonas sp. KC8 species 1030157 0 499 1 1915 1 species Sphingomonas sp. LK11 0 1390395 0 745310 species Sphingomonas sp. MM-1 498 1 1 448 1961362 0 Sphingomonas sp. NIC1 species 1327635 0 Sphingomonas sp. Cra20 species 1 512 0 397260 species Sphingomonas sanxanigenens 678 1 60 2086 5 1 genus Novosphingobium 0 165696 465 1 Novosphingobium pentaromativorans species 205844 0 413 1 48935 0 Novosphingobium aromaticivorans species 1 490 0 2644732 no rank 0 702113 species Novosphingobium sp. PP1Y 1 490 658 1 158500 0 Novosphingobium resinovorum species 72173 0 Citromicrobium genus 1 2 432 9 423 1 2630544 0 no rank 1 423 Citromicrobium sp. JL477 species 1634516 0 1649486 0 1 Rhizorhabdus genus 651 2 3 1850238 0 Rhizorhabdus dicambivorans species 648 1 122 22 8387 Erythrobacteraceae family 1 335929 0 4 1215 157 0 361177 genus Altererythrobacter 1 species Altererythrobacter ishigakiensis 0 476157 1 321 Altererythrobacter atlanticus species 1267766 0 1 388 0 361183 species Altererythrobacter epoxidivorans 349 1 genus 1855416 0 724 2 1 391 species Erythrobacter flavus 0 192812 266951 0 Erythrobacter seohaensis species 333 1 22 3 896 Croceicoccus genus 1 1295327 0 0 450378 species Croceicoccus marinus 1 519 0 1348774 species Croceicoccus naphthovorans 355 1 2800681 0 genus 2 1452 677 1 0 502682 species Erythrobacter gangjinensis 1 775 Erythrobacter atlanticus species 1648404 0 599 2 genus 2800686 0 289 1 692370 0 Altererythrobacter dongtanensis species 0 1982042 species Altererythrobacter mangrovi 1 310 2800682 0 genus 557 1 Altererythrobacter namhicola species 645517 0 1 557 2493 6 0 2800788 no rank 1094 3 62 1111 0 1 Porphyrobacter genus 1032 2 no rank 2683265 0 species Porphyrobacter HT-58-2 0 2023229 1 554 0 1896196 species Porphyrobacter sp. LM 6 478 1 1 Erythrobacter genus 1041 0 132 1399 3 851 1 0 39960 species Erythrobacter litoralis 416 1 1112 0 Porphyrobacter neustonensis species genus 0 2800685 329 1 543877 0 Altererythrobacter marensis species 1 329 127250 211 700 0 356 1 order Rhizobiales 69277 0 1 Phyllobacteriaceae family 10571 20 63 2 719 20 245876 0 Nitratireductor genus 1 1 699 472175 0 Nitratireductor basaltis species 18 458 2 1 genus Chelativorans 0 449972 440 1 2643807 0 no rank 1 440 species Chelativorans sp. BNC1 0 266779 68287 0 1 Mesorhizobium genus 7118 9 269 species Mesorhizobium sp. B7 0 1670800 811 1 805 1 species Mesorhizobium loti 0 381 no rank 0 325217 1 913 0 278153 species Mesorhizobium sp. WSM1497 913 1 1 753 species Mesorhizobium australicum 0 536018 71433 0 Mesorhizobium amorphae species 1 790 0 593909 species Mesorhizobium opportunistum 1 808 825 1 species Mesorhizobium japonicum 0 2066070 0 39645 species Mesorhizobium ciceri 1 1144 28100 0 Phyllobacterium genus 1 2 669 8 661 1 Phyllobacterium zundukense species 1867719 0 1 genus Hoeflea 0 274591 14 811 2 1 797 0 2614931 no rank 1 797 1620421 0 Hoeflea sp. IMCC20628 species 1 Aminobacter genus 31988 0 21 733 2 Aminobacter aminovorans species 83263 0 1 712 4 1699 4 1 family Chelatococcaceae 0 2036754 3 1695 78 28209 0 Chelatococcus genus 1 no rank 0 2638111 908 1 species Chelatococcus sp. CO-6 0 1702325 1 908 0 444444 species Chelatococcus daeguensis 709 1 0 82115 1 family Rhizobiaceae 34610 54 267 no rank 0 227290 35 19065 2 2 781 Neorhizobium genus 1 1525371 0 1 779 Neorhizobium galegae species 399 0 7 5201 102 0 357 genus Agrobacterium 1 2 1119 2632611 0 no rank 861208 0 Agrobacterium sp. H13-3 species 466 1 1 653 Agrobacterium sp. RAC06 species 1842536 0 3046 2 1183400 0 species group 0 358 species Agrobacterium tumefaciens 1 2595 0 1176649 species Agrobacterium fabrum 1 451 373 0 Agrobacterium vitis species 520 1 414 1 species Agrobacterium rhizogenes 0 359 0 379 genus Rhizobium 1 26 13083 853 species Rhizobium leguminosarum 0 384 2936 1 453 1 398 0 Rhizobium tropici species 0 396 species Rhizobium phaseoli 1139 1 Rhizobium gallicum species 56730 0 1 707 no rank 0 2613769 20 5485 384 1 species Rhizobium sp. Kim5 0 2020311 Rhizobium sp. N6212 species 1703965 0 1 3 1 379 species Rhizobium sp. IE4771 0 1301032 1 503 1703969 0 Rhizobium sp. N324 species 1703961 0 Rhizobium sp. N1314 species 101 1 0 1703962 species Rhizobium sp. N1341 9 1 128 1 0 2020313 species Rhizobium sp. TAL182 1914541 0 Rhizobium sp. Y9 species 1 360 544 1 0 1571470 species Rhizobium sp. ACO-34A 1703966 0 Rhizobium sp. N731 species 101 1 1125847 0 Rhizobium sp. NT-26 species 446 1 316 1 species Rhizobium sp. NXC14 0 1981173 429 1 Rhizobium sp. IRBG74 species 424182 0 1 3 1703964 0 Rhizobium sp. N621 species 0 2020312 species Rhizobium sp. CIAT894 392 1 Rhizobium sp. N741 species 1703967 0 6 1 1 471 2048897 0 Rhizobium sp. NXC24 species 1869170 0 Rhizobium sp. S41 species 457 1 1 446 Rhizobium sp. 10195 species 2028343 0 1 7 Rhizobium sp. N113 species 1703960 0 1510 1 Rhizobium etli species 29449 0 0 227292 no rank 6872 10 129 7 5679 genus Sinorhizobium 1 0 28105 1 578 species Sinorhizobium medicae 0 110321 0 194963 species Sinorhizobium americanum 630 1 species group 663276 0 1679 1 species Sinorhizobium fredii 0 380 1 1679 2 1228 0 2613772 no rank Sinorhizobium sp. CCBAU 05631 species 794846 0 577 1 651 1 Sinorhizobium sp. RAC02 species 1842534 0 1435 1 0 382 species Sinorhizobium meliloti 106591 0 Ensifer genus 1 3 1193 19 0 106592 species Ensifer adhaerens 1 670 0 716925 species Ensifer sojae 504 1 Liberibacter genus 1 34019 0 137 6 7523 34021 0 Candidatus Liberibacter asiaticus species 1 1159 1273132 0 Liberibacter crescens species 1 1774 0 309868 species Candidatus Liberibacter americanus 1 1729 34020 0 Candidatus Liberibacter africanus species 1 1320 1404 1 0 556287 species Candidatus Liberibacter solanacearum 0 323620 1 genus Shinella 883 2 8 no rank 2643062 0 875 1 1 875 Shinella sp. HZN7 species 879274 0 43 15 10324 family Methylobacteriaceae 1 0 119045 3 3790 genus 2282523 0 0 223967 species Methylobacterium populi 1004 1 1 497 species Methylobacterium zatmanii 0 29429 2289 1 Methylobacterium extorquens species 408 0 0 186650 1 genus Microvirga 752 2 15 737 1 1882682 0 Microvirga ossetica species Methylobacterium genus 1 407 0 256 9 5739 418223 0 Methylobacterium phyllosphaerae species 533 1 334852 0 Methylobacterium oryzae species 538 1 3 2005 no rank 2615210 0 0 426117 species Methylobacterium sp. 4-46 945 1 1 469 Methylobacterium sp. AMS5 species 925818 0 1479019 0 Methylobacterium sp. C1 species 591 1 917 1 0 270351 species Methylobacterium aquaticum 0 31998 species Methylobacterium radiotolerans 629 1 0 114616 species Methylobacterium nodulans 861 1 1 Methylocystaceae family 31993 0 13 1750 6 1039 3 37 0 133 1 genus Methylocystis 477 1 no rank 2625913 0 Methylocystis sp. SC2 species 187303 0 1 477 655015 0 Methylocystis bryophila species 525 1 18 698 2 1 Methylosinus genus 425 0 426 0 Methylosinus trichosporium species 1 680 family Bartonellaceae 1 0 772 25 18 27136 616 17 27111 genus Bartonella 1 0 773 11501 6 2645622 0 no rank 1 1903 0 515256 species Bartonella sp. 1-1C 1 1899 0 1933904 species Bartonella sp. WD16.2 1910 1 0 1933912 species Bartonella sp. Raccoon60 1 1982 0 1933910 species Bartonella sp. A1379B Bartonella sp. JB15 species 1933906 0 1905 1 species Bartonella sp. JB63 0 1933907 1902 1 Bartonella australis species 388640 0 1 892 1 1633 1318743 0 Bartonella ancashensis species 33045 0 Bartonella grahamii species 1 1532 Bartonella bacilliformis species 774 0 1742 1 1344 1 0 1686310 species Bartonella apis 1774 1 species Bartonella clarridgeiae 0 56426 0 803 species Bartonella quintana 1333 1 1 1548 species Bartonella henselae 0 38323 Bartonella vinsonii species 33047 0 1 1649 1547 1 0 85701 species Bartonella tribocorum 7 2389 36 0 335928 family Xanthobacteraceae 1 0 152053 1 genus Starkeya 838 2 12 0 921 species Starkeya novella 1 826 1 genus Xanthobacter 0 279 17 847 2 species Xanthobacter autotrophicus 0 280 830 1 2 668 15 6 0 Azorhizobium genus 1 1 653 7 0 Azorhizobium caulinodans species 0 118882 family Brucellaceae 1 20 4573 18 632 1899 14 1 Brucella genus 234 0 0 120576 species Brucella pinnipedialis 1 68 species Brucella ovis 0 236 33 1 1 59 0 29459 species Brucella melitensis species Brucella abortus 0 235 78 1 143 1 981386 0 Brucella vulpis species Brucella microti species 444163 0 1 57 29461 0 Brucella suis species 1 215 4 473 0 2632610 no rank 142 1 1149952 0 Brucella sp. 09RB8471 species species Brucella sp. 141012304 0 1885919 1 117 161 1 1844051 0 Brucella sp. 09RB8910 species 0 1891098 species Brucella sp. 2002734562 53 1 74 1 Brucella canis species 36855 0 120577 0 Brucella ceti species 67 1 Ochrobactrum genus 1 528 0 48 5 2656 579 1 species Ochrobactrum sp. A44 0 271865 419475 0 Ochrobactrum pseudogrignonense species 1 675 890 1 0 571256 species Ochrobactrum pituitosum 464 1 species Ochrobactrum anthropi 0 529 134 18757 26 1 family Bradyrhizobiaceae 0 41294 1 Bradyrhizobium genus 374 0 302 9026 11 1 1211 Bradyrhizobium diazoefficiens species 1355477 0 804 1 0 44255 species Bradyrhizobium oligotrophicum 1 1213 0 375 species Bradyrhizobium japonicum no rank 2631580 0 4811 6 754 1 species Bradyrhizobium sp. SK17 0 2057741 714 1 Bradyrhizobium sp. ORS 285 species 115808 0 species Bradyrhizobium sp. ORS 278 0 114615 880 1 1223566 0 Bradyrhizobium sp. CCGE-LA001 species 1 722 850 1 376 0 Bradyrhizobium sp. species 288000 0 Bradyrhizobium sp. BTAi1 species 891 1 685 1 0 1274631 species Bradyrhizobium icense 11 2 567 genus Variibacter 1 0 1649510 1333996 0 Variibacter gotjawalensis species 556 1 4230 2 62 1073 0 1 Rhodopseudomonas genus 1 4168 1076 0 Rhodopseudomonas palustris species 0 40136 genus Oligotropha 1 2 565 14 551 1 species Oligotropha carboxidovorans 0 40137 Bosea genus 1 85413 0 142 5 3280 0 1526658 species Bosea vaviloviae 1 860 0 2653178 no rank 2278 3 species Bosea sp. RAC05 0 1842539 1 804 633 1 1792307 0 Bosea sp. PAMC 26642 species 841 1 0 2015316 species Bosea sp. AS-1 16 3 955 genus Nitrobacter 1 0 911 427 1 species Nitrobacter winogradskyi 0 913 species Nitrobacter hamburgensis 0 912 512 1 45401 0 1 Hyphomicrobiaceae family 7681 19 94 0 119044 1 genus Filomicrobium 610 2 23 1 587 0 1608628 species Candidatus Filomicrobium marinum 2 554 4 0 1068 genus Rhodomicrobium 1 1 550 Rhodomicrobium vannielii species 1069 0 81 0 Hyphomicrobium genus 1 4 2177 99 53399 0 Hyphomicrobium denitrificans species 706 1 2619925 0 no rank 1 932 0 717785 species Hyphomicrobium sp. MC1 1 932 1 440 species Hyphomicrobium nitrativorans 0 1427356 59282 0 Blastochloris genus 1 2 757 27 730 1 0 1079 species Blastochloris viridis 16 2 750 Rhodoplanes genus 1 29407 0 1 734 0 2619116 no rank 1 734 species Rhodoplanes sp. Z2-YC6860 0 674703 1 genus Pelagibacterium 0 1082930 19 589 2 570 1 species Pelagibacterium halotolerans 0 531813 genus Devosia 1 0 46913 73 4 2150 0 196773 no rank 3 2077 772 1 0 1736675 species Devosia sp. A16 1643450 0 Devosia sp. H5989 species 660 1 0 2083786 species Devosia sp. I507 645 1 0 255475 family Aurantimonadaceae 1 7 2740 20 2089 4 91 293088 0 1 Martelella genus 1 737 Martelella mediterranea species 293089 0 736 1 no rank 0 2629616 1 736 686597 0 Martelella sp. AD-3 species 1486262 0 Martelella endophytica species 1 525 genus Aureimonas 1 0 414371 29 2 631 602 1 no rank 0 2615206 602 1 Aureimonas sp. AU20 species 1349819 0 6 2160 no rank 0 119042 32 2 649 genus Methyloceanibacter 1 0 1484898 617 1 species Methyloceanibacter caenitepidi 0 1384459 1 Hartmannibacter genus 1572860 0 28 860 2 832 1 0 1482074 species Hartmannibacter diazotrophicus 19 2 651 genus Pseudorhodoplanes 1 0 1734920 1 632 Pseudorhodoplanes sinuspersici species 1235591 0 4 5 1177 family Beijerinckiaceae 1 0 45404 16 2 670 Beijerinckia genus 1 532 0 1 654 533 0 Beijerinckia indica species 14 503 2 1 genus Methylocella 0 120652 Methylocella silvestris species 199596 0 1 489 119043 0 Rhodobiaceae family 1 3 983 2 981 2 28 0 256616 1 genus Parvibaculum 1 953 species Parvibaculum lavamentivorans 0 256618 8 7051 no rank 0 82117 1632780 0 Phreatobacter genus 1 2 812 25 1 787 species Phreatobacter sp. S-12 0 1868589 1 Micavibrio genus 213485 0 7 701 2 1 694 species Micavibrio aeruginosavorus 0 349221 2 4608 0 62654 clade genus Candidatus Puniceispirillum 1 0 767891 35 2 4608 1 4573 species Candidatus Puniceispirillum marinum 0 767892 930 2 51 991903 0 1 Polymorphum genus 879 1 0 991904 species Polymorphum gilvum 2 510 3 1 Magnetococcales order 1191478 0 family 1191479 0 508 2 2 508 1 0 162171 genus Magnetococcus 1 Magnetococcus marinus species 1124597 0 1 507 93 49905 158 0 204455 order Rhodobacterales 1 31989 0 Rhodobacteraceae family 1 92 49747 845 5 1 Thalassococcus genus 436357 0 745 2 7 0 1579315 1 genus Halocynthiibacter 0 1579316 species Halocynthiibacter arcticus 1 738 309512 0 1 Dinoroseobacter genus 792 2 1 791 1 215813 0 Dinoroseobacter shibae species 1 genus Rhodobacter 0 1060 64 3607 5 0 1063 species Rhodobacter sphaeroides 1 1523 612 1 0 1061 species Rhodobacter capsulatus no rank 0 196779 2 1408 1 730 Rhodobacter sp. LPB0142 species 1850250 0 Rhodobacter sp. CZR27 species 2033869 0 678 1 genus 263377 0 1653 2 no rank 2640570 0 1 815 1 815 1792508 0 Yangia sp. CCB-MM3 species species Thiobacimonas profunda 0 1229727 838 1 11 5 3180 Celeribacter genus 1 875170 0 1208324 0 Celeribacter indicus species 1 976 1 594 0 1397108 species Celeribacter marinus 968 1 Celeribacter manganoxidans species 1411902 0 species Celeribacter ethanolicus 0 1758178 631 1 4 2274 92 478070 0 Labrenzia genus 1 0 187304 species Labrenzia aggregata 732 1 no rank 2648686 0 2 1450 Labrenzia sp. VG12 species 2021862 0 1 762 Labrenzia sp. CP4 species 1674922 0 1 688 0 1759396 genus 536 1 1 536 2622455 0 no rank 0 1920883 species Marivivens sp. JLT3646 1 536 285107 0 1 Thioclava genus 560 2 1 species Thioclava nitratireducens 0 1915078 559 1 227873 0 1 Pannonibacter genus 768 2 11 757 1 0 121719 species Pannonibacter phragmitetus 984 2 no rank 58840 0 1 461 0 1904441 species Rhodobacteraceae bacterium Rhodobacteraceae bacterium QY30 species 2033435 0 1 523 3 942 22 0 92944 genus Ketogulonicigenium 1 1 519 0 92945 species Ketogulonicigenium vulgare species Ketogulonicigenium robustum 0 92947 1 401 1 3 genus Loktanella 0 245186 0 2433 1 genus Roseobacter 1423 3 11 1 700 0 42443 species Roseobacter litoralis Roseobacter denitrificans species 2434 0 1 712 0 188905 1 genus Jannaschia 654 2 3 2645469 0 no rank 1 651 651 1 Jannaschia sp. CCS1 species 290400 0 2 884 5 0 1609958 genus Confluentimicrobium 1 2643318 0 no rank 1 879 1 879 0 1609966 species Confluentimicrobium sp. EMB200-NS6 1 genus Tateyamaria 0 299261 6 662 2 656 1 species Tateyamaria omphalii 0 299262 1 Roseovarius genus 74030 0 11 737 2 Roseovarius mucosus species 215743 0 726 1 1 genus Paracoccus 0 265 123 5570 9 34003 0 Paracoccus aminophilus species 585 1 727 1 no rank 246570 0 1 727 1529068 0 Paracoccus sp. BM15 species 1 626 0 2065379 species Paracoccus sp. CBA4604 species Paracoccus aminovorans 0 34004 1 647 732 1 Paracoccus zhejiangensis species 1077935 0 266 0 Paracoccus denitrificans species 1 738 1 893 Paracoccus yeei species 147645 0 Paracoccus contaminans species 1945662 0 499 1 10 2 753 genus Antarctobacter 1 0 74032 0 74033 species Antarctobacter heliothermus 1 743 3 1739 16 97050 0 Ruegeria genus 1 1 1094 89184 0 Ruegeria pomeroyi species 1 629 no rank 2625375 0 1 629 0 292414 species Ruegeria sp. TM1040 0 58842 genus Sagittula 1 2 874 8 866 1 2624628 0 no rank 866 1 Sagittula sp. P11 species 2009329 0 1284657 0 Planktomarina genus 1 2 992 2 1284658 0 Planktomarina temperata species 1 990 0 191028 genus Leisingera 1 2 979 5 974 1 0 133924 species Leisingera methylohalidivorans 1933 4 23 53945 0 1 Octadecabacter genus 1 549 0 1458307 species Octadecabacter temperatus 53946 0 Octadecabacter arcticus species 1 660 1 701 species Octadecabacter antarcticus 0 1217908 7 680 2 1 Rhodobaca genus 119541 0 1 673 0 441209 species Rhodobaca barguzinensis 1 638 genus 0 1649279 638 1 Ruegeria mobilis species 379347 0 0 367771 genus Marinovum 1 2 1049 2 0 42444 species Marinovum algicola 1047 1 804 1 genus 0 2211641 Loktanella vestfoldensis species 245188 0 804 1 302485 0 Phaeobacter genus 1 5 5636 74 1844006 0 Phaeobacter porticola species 1 569 0 221822 species Phaeobacter inhibens 2206 1 1 1259 Phaeobacter piscinae species 1580596 0 Phaeobacter gallaeciensis species 60890 0 1 1528 1 genus Sulfitobacter 0 60136 7 1571 3 784 1 0 196795 no rank Sulfitobacter sp. AM1-D1 species 1917485 0 784 1 species Sulfitobacter pseudonitzschiae 0 1402135 1 780 0 1097466 genus Defluviimonas 1 2 764 12 1 752 Defluviimonas alba species 1335048 0 1 genus Pelagibaca 0 360528 2 1000 2 Pelagibaca abyssi species 1250539 0 1 998 genus Rhodovulum 1 0 34008 33 4 2766 2631432 0 no rank 1482 2 708 1 Rhodovulum sp. P5 species 1564506 0 species Rhodovulum sp. MB263 0 308754 1 774 1 1251 Rhodovulum sulfidophilum species 35806 0 5 745 2 1 Roseibacterium genus 159345 0 1 740 159346 0 Roseibacterium elongatum species 0 54526 order Pelagibacterales 1 9 281099 57 95 6 261414 Pelagibacteraceae family 1 1655514 0 144216 2 1655516 0 no rank 744985 0 alpha proteobacterium HIMB59 species 13043 1 species alpha proteobacterium HIMB5 0 859653 1 131173 1 genus Candidatus Pelagibacter 0 198251 41 117103 3 17902 1 no rank 0 2647897 species Candidatus Pelagibacter sp. IMCC9063 0 1002672 17902 1 1 99160 Candidatus Pelagibacter ubique species 198252 0 2045213 0 Candidatus Fonsibacter genus 1 2 19628 43 19585 1 1925548 0 Candidatus Fonsibacter ubiquis species 0 766 1 order Rickettsiales 44948 55 49 1 family Anaplasmataceae 0 942 63 22198 23 8 9812 0 952 tribe 953 0 Wolbachia genus 1 8 9812 203 no rank 2640676 0 7 9609 80849 0 Wolbachia endosymbiont of Brugia malayi species 1180 1 1259 1 0 163164 species Wolbachia endosymbiont of Drosophila melanogaster Wolbachia sp. wRi species 66084 0 1 1287 1 1096 0 77551 species Wolbachia endosymbiont of Onchocerca volvulus 1115 1 Wolbachia endosymbiont of Onchocerca ochengi species 100901 0 0 246273 species Wolbachia endosymbiont of Cimex lectularius 1019 1 1 2653 0 77038 species Wolbachia endosymbiont of Drosophila simulans 0 768 genus Anaplasma 1 4 1007 6 0 770 species Anaplasma marginale 276 1 253 1 species Anaplasma centrale 0 769 0 106179 species group 472 1 species Anaplasma phagocytophilum 0 948 1 472 15 1573 4 1 genus Neorickettsia 0 33993 1 538 950 0 Neorickettsia risticii species 0 951 species Neorickettsia sennetsu 493 1 527 1 Neorickettsia helminthoeca species 33994 0 78 9743 6 1 genus Ehrlichia 0 943 7959 4 0 106178 species group 1 2211 779 0 Ehrlichia ruminantium species 944 0 Ehrlichia canis species 1 2075 1933 1 Ehrlichia chaffeensis species 945 0 1 1740 Ehrlichia muris species 35795 0 1706 1 106181 0 no rank 1 1706 391036 0 Ehrlichia sp. HF species 1328881 0 family 1327 2 411566 0 1 Candidatus Midichloria genus 1327 2 16 1311 1 234827 0 Candidatus Midichloria mitochondrii species no rank 0 1699067 3283 1 Rickettsiales bacterium Ac37b species 1528098 0 3283 1 0 775 family Rickettsiaceae 1 28 18091 29 tribe 0 33988 25 16805 4 2 2639 genus Orientia 1 0 69474 784 0 Orientia tsutsugamushi species 1 2635 0 780 genus Rickettsia 1 23 14166 1327 1602 1 114295 0 no rank Rickettsia endosymbiont of Bemisia tabaci species 337479 0 1 1602 2877 2 species group 1129742 0 1705 1 0 33990 species Rickettsia bellii 1 1172 788 0 Rickettsia canadensis species 2 3332 114292 0 species group species Rickettsia prowazekii 0 782 1690 1 Rickettsia typhi species 785 0 1 1642 114277 0 species group 5028 17 161 1 species Rickettsia massiliae 0 35791 772 1 Rickettsia felis species 42862 0 species Rickettsia amblyommatis 0 33989 1 244 species Rickettsia rickettsii 0 783 1 156 1 96 Rickettsia philipii species 1105106 0 241 1 33992 0 Rickettsia rhipicephali species species Rickettsia australis 0 787 1 921 1 666 Rickettsia akari species 786 0 Rickettsia monacensis species 109232 0 587 1 97 1 Rickettsia conorii species 781 0 1 63 35794 0 Rickettsia slovaca species 102 1 species Rickettsia parkeri 0 35792 0 35788 species Rickettsia africae 1 78 1 125 species Rickettsia montanensis 0 33991 132 1 35790 0 Rickettsia japonica species species Rickettsia heilongjiangensis 0 226665 123 1 47589 0 Rickettsia peacockii species 1 464 0 2115980 1 genus Candidatus Phycorickettsia 1257 2 5 1 1252 2115978 0 Candidatus Phycorickettsia trachydisci species 4265 9 8 1921002 0 1 Holosporales order 5 1447 2 1 family Holosporaceae 0 44746 no rank 204454 0 1 1442 1 1442 86106 0 endosymbiont of Acanthamoeba sp. UWC8 species 1777752 0 1 Candidatus Paracaedibacteraceae family 1134 3 11 1521255 0 Candidatus Paracaedibacter genus 1 2 1123 14 species Candidatus Paracaedibacter acanthamoebae 0 91604 1109 1 1 family Caedimonadaceae 0 2100208 3 1676 3 2 1673 2 1 Candidatus Nucleicultrix genus 1509243 0 1671 1 0 1509244 species Candidatus Nucleicultrix amoebiphila order 2800059 0 857 2 857 2 0 2800061 family 74317 0 1 Maricaulis genus 857 2 26 74318 0 Maricaulis maris species 831 1 1 order Parvularculales 0 255473 6 1128 4 3 1122 21 0 255474 family Parvularculaceae 1 0 208215 1 genus Parvularcula 1101 2 15 1 1086 Parvularcula bermudensis species 208216 0 7 1188 1 1807140 0 Acidithiobacillia class 1 1187 6 41 0 225057 1 order Acidithiobacillales 0 225058 family Acidithiobacillaceae 1 5 1146 21 Acidithiobacillus genus 1 119977 0 25 4 1125 1 374 Acidithiobacillus ferrivorans species 160808 0 Acidithiobacillus caldus species 33059 0 441 1 species Acidithiobacillus ferrooxidans 0 920 1 285 4 4647 13 1 class Oligoflexia 0 1553900 0 2024979 order Bacteriovoracales 1 7 2728 9 263369 0 Bacteriovoracaceae family 1 3 784 2 1 genus Bacteriovorax 0 146784 4 782 2 species Bacteriovorax stolpii 0 960 1 778 1935 3 2 0 1652132 1 family Halobacteriovoraceae Halobacteriovorax genus 1 1652133 0 4 2 1933 1 1929 Halobacteriovorax marinus species 97084 0 Bdellovibrionales order 1 213481 0 7 5 1915 12 1908 4 1 family Bdellovibrionaceae 0 213483 10 3 1896 Bdellovibrio genus 1 958 0 453816 0 Bdellovibrio exovorus species 1 631 species Bdellovibrio bacteriovorus 0 959 1 1255 0 68525 subphylum 121045 198 48 72 71788 Epsilonproteobacteria class 1 29547 0 6 1661 3 235899 0 Nautiliales order 1 0 2795691 family 2 449 7 2 449 Nitratiruptor genus 1 269258 0 no rank 0 2624044 1 442 species Nitratiruptor sp. SB155-2 0 387092 442 1 4 1209 3 1 Nautiliaceae family 224467 0 2 2 1205 Nautilia genus 1 191291 0 Nautilia profundicola species 244787 0 1 1203 1 Campylobacterales order 213849 0 147 70079 65 15 9383 4 72293 0 Helicobacteraceae family 1 196 2 1 843 0 1 Wolinella genus 844 0 Wolinella succinogenes species 1 195 0 209 genus Helicobacter 1 12 9183 24 1 375 no rank 2593540 0 species Helicobacter sp. MIT 01-6242 0 222136 375 1 669 1 0 37372 species Helicobacter bilis 1 220 214 0 Helicobacter felis species Helicobacter cinaedi species 213 0 1 436 Helicobacter hepaticus species 32025 0 697 1 Helicobacter acinonychis species 212 0 1 307 1 986 Helicobacter cetorum species 138563 0 210 0 Helicobacter pylori species 1 4257 Helicobacter mustelae species 217 0 355 1 458 1 Helicobacter typhlonius species 76936 0 399 1 1591088 0 Helicobacter himalayensis species 1213 4 family 2771472 0 genus 0 269260 399 1 Nitratifractor salsuginis species 269261 0 1 399 814 3 18 0 265570 1 genus Sulfurovum 1 380 0 2646778 no rank 387093 0 Sulfurovum sp. NBC37-1 species 380 1 0 206403 species Sulfurovum lithotrophicum 1 416 0 72294 1 family Campylobacteraceae 57163 41 102 5 15805 2321108 0 no rank 1 3744 genus 0 2321187 1 3744 Arcobacter sp. LPB0137 species 1850254 0 28196 0 Arcobacter genus 1 3 8225 102 0 28199 species Arcobacter nitrofigilis 1 2984 28197 0 Arcobacter butzleri species 5139 1 2321207 0 no rank 3836 1 3836 1 Arcobacter sp. L species 944547 0 69 4489 9 1 genus Sulfurospirillum 0 57665 no rank 2618290 0 2200 3 0 1986224 species Sulfurospirillum sp. SL2-1 1 704 1 611 Sulfurospirillum sp. JPD-1 species 220622 0 885 1 species Sulfurospirillum sp. UCH001 0 1581011 Sulfurospirillum barnesii species 44674 0 1 516 194424 0 Sulfurospirillum halorespirans species 1 379 1 295 Sulfurospirillum cavolei species 366522 0 423 1 Sulfurospirillum multivorans species 66821 0 607 1 0 65553 species Sulfurospirillum deleyianum 194 0 Campylobacter genus 1 26 36767 258 1 2182 1965231 0 Campylobacter pinnipediorum species 522485 0 Campylobacter avium species 1 895 1 1442 species Campylobacter fetus 0 196 0 201 species Campylobacter lari 1 4142 0 206 species Campylobacter sputorum 2517 1 3179 1 197 0 Campylobacter jejuni species 497724 0 Campylobacter subantarcticus species 1 1478 374106 0 Campylobacter cuniculorum species 1160 1 1 742 Campylobacter lanienae species 75658 0 4 4745 2593542 0 no rank 1209 1 0 1660074 species Campylobacter sp. RM8964 species Campylobacter sp. RM16704 0 1500960 1692 1 725 1 1660073 0 Campylobacter sp. RM6137 species 0 1660076 species Campylobacter sp. RM12175 1119 1 1772 1 species Campylobacter insulaenigrae 0 260714 866 1 species Campylobacter hominis 0 76517 0 198 species Campylobacter hyointestinalis 1197 1 1562 1 Campylobacter volucris species 1031542 0 1 989 0 199 species Campylobacter concisus species Campylobacter peloridis 0 488546 1 1424 0 824 species Campylobacter gracilis 1 201 723 1 species Campylobacter helveticus 0 28898 0 1244531 species Campylobacter iguaniorum 1 790 species Campylobacter ureolyticus 0 827 1 1862 Campylobacter curvus species 200 0 1 185 1 2456 species Campylobacter coli 0 195 4 2173 family 2771471 0 286130 0 genus 1 264 1 264 0 148813 species Sulfuricurvum kujiense genus Sulfurimonas 1 0 202746 10 3 1909 1 798 0 202747 species Sulfurimonas autotrophica 1101 1 39766 0 Sulfurimonas denitrificans species 126 49257 59 0 28221 class Deltaproteobacteria 1 2 419 4 1 order Desulfarculales 0 453227 family Desulfarculaceae 1 0 453228 10 3 417 1 genus Desulfarculus 0 453229 7 407 2 400 1 species Desulfarculus baarsii 0 453230 38 24308 224 29 0 Myxococcales order 1 3 2086 suborder 0 224462 2086 3 15 0 224464 1 family Kofleriaceae Haliangium genus 1 162027 0 6 2 2071 Haliangium ochraceum species 80816 0 1 2065 13843 26 0 80811 suborder Vulgatibacteraceae family 1 1524213 0 1 3 642 Vulgatibacter genus 1 1524214 0 4 2 641 637 1 Vulgatibacter incomptus species 1391653 0 1 Archangiaceae family 39 0 55 4613 9 0 42 1 genus Cystobacter 975 2 5 Cystobacter fuscus species 43 0 970 1 2 710 9 40 0 Stigmatella genus 1 41 0 Stigmatella aurantiaca species 1 701 4 2082 2 1 genus Archangium 0 47 1 2078 48 0 Archangium gephyra species 44 0 1 Melittangium genus 791 2 2 83453 0 Melittangium boletus species 789 1 1 Anaeromyxobacteraceae family 1524215 0 13 2625 5 1 Anaeromyxobacter genus 161492 0 41 2612 4 1 1137 Anaeromyxobacter dehalogenans species 161493 0 2620896 0 no rank 1434 2 1 785 Anaeromyxobacter sp. Fw109-5 species 404589 0 1 649 species Anaeromyxobacter sp. K 0 447217 1 Myxococcaceae family 31 0 16 5963 9 0 32 1 genus Myxococcus 4228 5 98 924 1 83455 0 Myxococcus stipitatus species 689 1 0 34 species Myxococcus xanthus species Myxococcus hansupus 0 1297742 799 1 1718 1 0 33 species Myxococcus fulvus 0 83461 1 genus Corallococcus 1719 3 34 Corallococcus coralloides species 184914 0 1 929 1 756 35 0 Myxococcus macrosporus species suborder 80812 0 8 8155 3 1466 3 1055686 0 Sandaracinaceae family 1 1 Sandaracinus genus 1055688 0 8 1463 2 Sandaracinus amylolyticus species 927083 0 1455 1 family Polyangiaceae 1 0 49 12 5 6689 39643 0 Sorangium genus 1 2 5396 13 1 5383 0 56 species Sorangium cellulosum 0 50 genus Chondromyces 1 2 1281 4 species Chondromyces crocatus 0 52 1 1277 0 213113 1 order Desulfurellales 2248 6 3 2245 5 8 117942 0 1 Desulfurellaceae family Desulfurella genus 1 33001 0 1 2 1579 1578 1 species Desulfurella acetivorans 0 33002 4 2 658 Hippea genus 1 84404 0 84405 0 Hippea maritima species 654 1 61 6801 24 1 order Desulfovibrionales 0 213115 0 213117 family Desulfohalobiaceae 1 3 229 6 1 genus Desulfohalobium 0 45662 3 223 2 species Desulfohalobium retbaense 0 45663 1 220 549 3 0 213116 family 9 549 3 1 genus Desulfomicrobium 0 898 899 0 Desulfomicrobium baculatum species 292 1 1 248 132132 0 Desulfomicrobium orale species 194924 0 Desulfovibrionaceae family 1 17 5962 34 1 1326 0 41707 genus 1326 1 0 29546 species Lawsonia intracellularis 2937 9 24 872 0 1 Desulfovibrio genus 91 1 1725232 0 Candidatus Desulfovibrio trichonymphae species 318 1 0 58180 species Desulfovibrio alaskensis species Desulfovibrio vulgaris 0 881 925 1 184917 0 Desulfovibrio magneticus species 565 1 1 464 0 876 species Desulfovibrio desulfuricans 0 901 species Desulfovibrio piger 1 180 0 2593640 no rank 171 1 1 171 0 631220 species Desulfovibrio sp. G11 44742 0 Desulfovibrio fairfieldensis species 1 199 1 genus Pseudodesulfovibrio 0 2035811 10 877 4 57320 0 Pseudodesulfovibrio profundus species 1 220 0 182210 species Pseudodesulfovibrio aespoeensis 326 1 321 1 Pseudodesulfovibrio indicus species 1716143 0 2582840 0 genus 278 1 278 1 species Desulfovibrio africanus 0 873 genus 2794998 0 510 1 1 510 0 880 species Desulfovibrio salexigens 69541 0 Desulfuromonadales order 1 24 7932 91 35 14 5272 Geobacteraceae family 1 213422 0 11 2 389 Geoalkalibacter genus 1 392332 0 1 378 0 483547 species Geoalkalibacter subterraneus Geobacter genus 1 28231 0 66 11 4848 345632 0 Geobacter pickeringii species 322 1 280 1 species Geobacter anodireducens 0 1340425 species Geobacter daltonii 0 1203471 1 321 1426 1 0 351604 species Geobacter uraniireducens 1 389 Geobacter bemidjiensis species 225194 0 867 2 0 2627627 no rank 0 443143 species Geobacter sp. M18 500 1 species Geobacter sp. M21 0 443144 367 1 Geobacter metallireducens species 28232 0 624 1 Geobacter sulfurreducens species 35554 0 277 1 1 276 0 313985 species Geobacter lovleyi 213421 0 Desulfuromonadaceae family 1 9 2569 12 0 18 genus Pelobacter 1 5 1313 20 1 312 0 29542 species Pelobacter acetylenicus 1 392 0 19 species Pelobacter carbinolicus 1 313 no rank 0 2620299 0 1842532 species Pelobacter sp. SFB93 313 1 276 1 29543 0 Pelobacter propionicus species 1 genus Desulfuromonas 0 890 20 1244 3 1 414 0 2614637 no rank 0 1823759 species Desulfuromonas sp. DDH964 1 414 1 810 Desulfuromonas soudanensis species 1603606 0 10 1220 13 0 213462 order Syntrophobacterales 1 1 Syntrophobacteraceae family 213465 0 1 294 3 Syntrophobacter genus 1 29526 0 4 2 293 0 119484 species Syntrophobacter fumaroxidans 289 1 1 Syntrophaceae family 213468 0 6 913 6 5 345 2 1 Desulfomonile genus 2357 0 340 1 Desulfomonile tiedjei species 2358 0 genus Syntrophus 1 0 43773 1 2 302 1 301 Syntrophus aciditrophicus species 316277 0 260 1 0 60892 genus Desulfobacca acetoxidans species 60893 0 1 260 1 Desulfobacterales order 213118 0 51 6270 19 1 Desulfobacteraceae family 213119 0 21 4427 10 2 1626 13 0 218207 genus Desulfatibacillum 1 0 259354 species Desulfatibacillum alkenivorans 1 1613 896 0 1 Desulfococcus genus 900 3 8 366 1 species Desulfococcus multivorans 0 897 1 526 0 181663 species Desulfococcus oleovorans 13 2 424 genus Desulfobacterium 1 0 2295 0 2296 species Desulfobacterium autotrophicum 1 411 28222 0 Desulfobacula genus 1 2 1456 1 1455 1 0 28223 species Desulfobacula toluolica 14 8 1792 family Desulfobulbaceae 1 0 213121 0 53318 genus Desulfocapsa 1 2 590 3 587 1 Desulfocapsa sulfexigens species 65555 0 2 271 3 893 0 Desulfobulbus genus 1 1 268 Desulfobulbus sp. ORNL species 1986146 0 18 651 2 1 genus Desulfotalea 0 109168 0 84980 species Desulfotalea psychrophila 633 1 427922 0 genus 266 1 species Desulfurivibrio alkaliphilus 0 427923 1 266 670 6 2 0 580370 1 class Zetaproteobacteria 5 668 16 580371 0 Mariprofundales order 1 4 652 2 0 580372 family Mariprofundaceae 1 26 3 650 Mariprofundus genus 1 377315 0 0 1921086 species Mariprofundus aestuarium 1 324 1 300 1921087 0 Mariprofundus ferrinatatus species 1124 904 611361 class Gammaproteobacteria 1 0 1236 order Aeromonadales 1 0 135624 55 29 10898 28 10843 118 84642 0 Aeromonadaceae family 1 1 540 2 1 genus Zobellella 0 347533 539 1 0 347534 species Zobellella denitrificans 986 3 11 0 225143 1 genus Oceanisphaera species Oceanisphaera profunda 0 1416627 511 1 Oceanisphaera sp. AMac2203 species 1903694 0 1 464 129577 0 1 Oceanimonas genus 469 2 5 2636315 0 no rank 1 464 species Oceanimonas sp. GK1 0 511062 1 464 2 329 3 0 43947 genus Tolumonas 1 326 1 species Tolumonas auensis 0 43948 642 0 Aeromonas genus 1 18 8401 330 260 1 Aeromonas dhakensis species 196024 0 1 301 Aeromonas media species 651 0 648 0 Aeromonas caviae species 1 197 2640 8 0 257493 no rank 0 1636608 species Aeromonas sp. ASNIH3 237 1 236 1 Aeromonas sp. ASNIH2 species 1636607 0 0 1636609 species Aeromonas sp. ASNIH4 1 419 293 1 Aeromonas sp. CU5 species 2033033 0 1 593 Aeromonas sp. ASNIH1 species 1636606 0 1 186 Aeromonas sp. ASNIH7 species 1920107 0 species Aeromonas sp. CA23 0 2033032 1 371 Aeromonas sp. ASNIH5 species 1758179 0 1 305 229 1 948519 0 Aeromonas rivipollensis species 0 645 species Aeromonas salmonicida 997 1 1 879 Aeromonas veronii species 654 0 0 652 species Aeromonas schubertii 1 307 1 1948 0 644 species Aeromonas hydrophila 0 558964 species Aeromonas aquatica 313 1 0 72274 1 order Pseudomonadales 98699 129 250 97 40222 42 1 family Moraxellaceae 0 468 469 0 1 Acinetobacter genus 30003 25 322 1148157 0 Acinetobacter oleivorans species 1 1050 species Acinetobacter radioresistens 0 40216 704 1 1 749 40214 0 Acinetobacter johnsonii species 0 29430 species Acinetobacter haemolyticus 993 1 756892 0 Acinetobacter indicus species 413 1 species group 0 909768 5 13452 1461 1 106654 0 Acinetobacter nosocomialis species 1 1838 species Acinetobacter calcoaceticus 0 471 1049 1 Acinetobacter lactucae species 1785128 0 species Acinetobacter baumannii 0 470 1 4746 species Acinetobacter pittii 0 48296 4358 1 Acinetobacter junii species 40215 0 1362 1 Acinetobacter schindleri species 108981 0 1 712 species Acinetobacter bereziniae 0 106648 1094 1 652 1 0 1789224 species Acinetobacter larvae 1 1687 species Acinetobacter equi 0 1324350 196816 0 no rank 5124 7 1636603 0 Acinetobacter sp. ACNIH1 species 1 832 1 795 0 1758189 species Acinetobacter sp. ACNIH2 1407071 0 Acinetobacter sp. TGL-Y2 species 1 796 1 887 Acinetobacter sp. TTH0-4 species 1646498 0 1608473 0 Acinetobacter sp. NCu2D-2 species 636 1 509 1 Acinetobacter sp. LoGeW2-3 species 1808001 0 Acinetobacter sp. SWBY1 species 2079596 0 669 1 1 883 species 0 202950 0 62977 strain Acinetobacter sp. ADP1 1 883 806 1 Acinetobacter soli species 487316 0 1 genus Moraxella 0 475 26 3505 5 Moraxella catarrhalis species 480 0 942 1 1 723 0 386891 species Moraxella bovoculi 34062 0 Moraxella osloensis species 1 1347 1 467 Moraxella ovis species 29433 0 genus Psychrobacter 1 0 497 154 11 6617 3974 6 no rank 196806 0 571800 0 Psychrobacter sp. G species 1 562 1028416 0 Psychrobacter sp. DAB_AL43B species 632 1 1 666 1699624 0 Psychrobacter sp. P11G5 species 1 886 0 349106 species Psychrobacter sp. PRwf-1 species Psychrobacter sp. P2G3 0 1699622 1 669 1 559 Psychrobacter sp. AntiMn-1 species 1720344 0 1 665 Psychrobacter urativorans species 45610 0 1 521 330922 0 Psychrobacter cryohalolentis species 715 1 0 261164 species Psychrobacter alimentarius 588 1 species Psychrobacter arcticus 0 334543 Pseudomonadaceae family 1 135621 0 367 86 58227 0 351 subfamily 1478 3 15 1478 3 1 genus Azotobacter 0 352 species Azotobacter vinelandii 0 354 1 554 909 1 species Azotobacter chroococcum 0 353 1849530 0 Oblitimonas genus 1 2 727 1 Oblitimonas alkaliphila species 1697053 0 726 1 1499 80 55655 genus Pseudomonas 1 0 286 136843 0 species group 8904 9 species Pseudomonas corrugata 0 47879 1 227 260 1 species Pseudomonas poae 0 200451 1 278 Pseudomonas veronii species 76761 0 0 380021 species Pseudomonas protegens 1 488 1 960 species Pseudomonas azotoformans 0 47878 266 1 0 75612 species Pseudomonas mandelii Pseudomonas orientalis species 76758 0 259 1 0 200450 species Pseudomonas trivialis 1 925 294 0 Pseudomonas fluorescens species 1 5241 729 1 0 1853130 species Pseudomonas silesiensis 136849 0 species group 5401 8 315 1 Pseudomonas cichorii species 36746 0 1 383 2775504 0 no rank 383 1 0 1206777 species Pseudomonas sp. Lz4W 314 1 46257 0 Pseudomonas avellanae species 246 1 species Pseudomonas viridiflava 0 33069 1 2458 species subgroup 0 251695 1 2458 317 0 Pseudomonas syringae species 1 769 Pseudomonas syringae group genomosp. 3 species 251701 0 916 2 species subgroup 0 251698 1 522 29438 0 Pseudomonas savastanoi species 1 394 0 47877 species Pseudomonas amygdali 484 1 0 237610 species Pseudomonas psychrotolerans 6 7468 0 136841 species group 1578 1 species Pseudomonas mendocina 0 300 species subgroup 1232139 0 1 668 668 1 1149133 0 Pseudomonas furukawaii species species Pseudomonas resinovorans 0 53412 1 524 1 3398 0 287 species Pseudomonas aeruginosa 1 434 0 43263 species Pseudomonas alcaligenes species Pseudomonas citronellolis 0 53408 1 866 364 1 species Pseudomonas versuta 0 1788301 649 1 species Pseudomonas brassicacearum 0 930166 0 1583341 species Pseudomonas cerasi 508 1 0 65741 species Pseudomonas knackmussii 1 516 312 1 species Pseudomonas entomophila 0 312306 species group 136846 0 2 3583 species Pseudomonas balearica 0 74829 454 1 1 3129 578833 0 species subgroup species Pseudomonas stutzeri 0 316 1 3129 species Pseudomonas frederiksbergensis 0 104087 1 853 species Pseudomonas rhizosphaerae 0 216142 281 1 Pseudomonas parafulva species 157782 0 1 645 0 136842 species group 2577 2 1910 1 Pseudomonas chlororaphis species 587753 0 0 296 species Pseudomonas fragi 1 667 101564 0 Pseudomonas alcaliphila species 459 1 713 1 0 198620 species Pseudomonas koreensis 219572 0 Pseudomonas antarctica species 1 267 346 1 237609 0 Pseudomonas alkylphenolica species 0 157783 species Pseudomonas cremoricolorata 1 335 1 175 species Pseudomonas lurida 0 244566 10780 30 0 196821 no rank 2069256 0 Pseudomonas sp. XWY-1 species 315 1 306 1 2049589 0 Pseudomonas sp. HLS-6 species 373 1 Pseudomonas sp. StFLB209 species 1028989 0 1 295 2083053 0 Pseudomonas sp. SWI44 species 1 326 Pseudomonas sp. Os17 species 1500686 0 1294143 0 Pseudomonas sp. ATCC 13867 species 1 420 324 1 0 1659194 species Pseudomonas sp. GR 6-02 248 1 0 2018067 species Pseudomonas sp. FDAARGOS_380 1 402 species Pseudomonas sp. NC02 0 2067572 0 1259844 species Pseudomonas sp. FGI182 239 1 1 300 species Pseudomonas sp. DR 5-09 0 1534110 0 1207075 species Pseudomonas sp. UW4 250 1 Pseudomonas sp. TKP species 1415630 0 1 637 1 302 0 2083052 species Pseudomonas sp. SWI36 0 1611770 species Pseudomonas sp. MRSN12121 389 1 2083055 0 Pseudomonas sp. LH1G9 species 289 1 1931241 0 Pseudomonas sp. S-6-2 species 1 450 1 253 species Pseudomonas sp. VLB120 0 69328 1 368 Pseudomonas sp. PONIH3 species 1636610 0 Pseudomonas sp. LPH1 species 1898684 0 443 1 species Pseudomonas sp. CC6-YY-74 0 1930532 731 1 319 1 Pseudomonas sp. SWI6 species 2083051 0 234 1 Pseudomonas sp. MYb193 species 1827300 0 0 1981174 species Pseudomonas sp. M30-35 1 426 0 1856685 species Pseudomonas sp. TCU-HL1 1 344 0 1500687 species Pseudomonas sp. St29 319 1 species Pseudomonas sp. JY-Q 0 1338689 242 1 1 293 2083054 0 Pseudomonas sp. LG1D9 species 590 1 species Pseudomonas sp. URMO17WK12:I11 0 1283291 1649877 0 Pseudomonas sp. CCOS 191 species 353 1 6 7807 species group 0 136845 Pseudomonas fulva species 47880 0 595 1 70775 0 Pseudomonas plecoglossicida species 1 269 0 78327 species Pseudomonas mosselii 1141 1 970 1 76759 0 Pseudomonas monteilii species 1 444 0 47885 species Pseudomonas oryzihabitans species Pseudomonas putida 0 303 1 4388 13 4289 19 0 135618 order Methylococcales 1 0 403 1 family Methylococcaceae 4270 12 23 5 2560 73 0 416 genus Methylomonas 1 1 528 421 0 Methylomonas methanica species 941 1 species Methylomonas denitrificans 0 1538553 Methylomonas koyamae species 702114 0 464 1 no rank 0 2608980 1 554 Methylomonas sp. DH-1 species 1727196 0 554 1 323 2 2 0 413 1 genus Methylococcus 414 0 Methylococcus capsulatus species 1 321 1 2 887 genus Methylomicrobium 1 0 39773 1 886 Methylomicrobium alcaliphilum species 271065 0 1 Methylovulum genus 762296 0 2 477 2 species Methylovulum psychrotolerans 0 1704499 475 1 72 31003 140 0 135619 order Oceanospirillales 1 224379 0 1 Hahellaceae family 730 3 2 2 728 18 158481 0 Hahella genus 1 species Hahella chejuensis 0 158327 710 1 1 Alcanivoracaceae family 224372 0 30 4094 9 1 genus Alcanivorax 0 59753 142 3225 6 1 760 1306787 0 Alcanivorax pacificus species 1 598 1094342 0 Alcanivorax xenomutans species no rank 2638842 0 554 1 species Alcanivorax sp. NBRC 101098 0 1113728 554 1 0 285091 species Alcanivorax dieselolei 1 596 Alcanivorax borkumensis species 59754 0 1 575 0 2025617 1 genus Ketobacter 839 2 20 Ketobacter alkanivorans species 1917421 0 1 819 934 3 24 0 191033 1 family Oleiphilaceae 141450 0 1 Oleiphilus genus 910 2 13 species Oleiphilus messinensis 0 141451 1 897 255527 0 Saccharospirillaceae family 1 5 1723 10 0 1445504 genus Gynuella 1 2 942 16 1 926 Gynuella sunshinyii species 1445505 0 0 230494 1 genus Reinekea 771 2 2 769 1 Reinekea forsetii species 1336806 0 0 135620 family Oceanospirillaceae 1 13 6875 34 14 764 2 1 genus Bacterioplanes 0 1537406 0 1249553 species Bacterioplanes sanyensis 750 1 4 3190 10 0 28253 genus Marinomonas 1 species Marinomonas mediterranea 0 119864 1 973 species Marinomonas posidonica 0 936476 1 804 no rank 0 196814 1403 1 species Marinomonas sp. MWYL1 0 400668 1 1403 Marinobacterium genus 1 48075 0 5 2 956 1821621 0 Marinobacterium aestuarii species 951 1 8 948 2 1 genus Oleispira 0 188907 1 940 Oleispira antarctica species 188908 0 0 187492 genus Thalassolituus 1 2 983 9 1 974 187493 0 Thalassolituus oleivorans species 0 28256 family Halomonadaceae 1 32 13490 109 504090 0 Kushneria genus 1 3 981 16 456 1 species Kushneria marisflavi 0 157779 509 1 0 698828 species Kushneria konosiri 4 552 2 1 genus Halotalea 0 376488 Halotalea alkalilenta species 376489 0 548 1 15 7396 137 0 2745 genus Halomonas 1 482 1 species Halomonas campaniensis 0 213554 0 475662 species Halomonas beimenensis 796 1 no rank 2609666 0 8 3943 species Halomonas sp. 'Soap Lake #6' 0 1949203 446 1 1 610 species Halomonas sp. SF2003 0 2136172 1 481 1610576 0 Halomonas sp. R57-5 species 1 524 species Halomonas sp. KO116 0 1504981 1 395 1118153 0 Halomonas sp. GFAJ-1 species 484 1 0 1971364 species Halomonas sp. GT 560 1 species Halomonas sp. 1513 0 1883416 1 443 0 1962264 species Halomonas sp. 'Soap Lake #7' 1 393 0 507626 species Halomonas chromatireducens species Halomonas aestuarii 0 1897729 1 566 Halomonas huangheensis species 1178482 0 671 1 408 1 Halomonas hydrothermalis species 115561 0 Cobetia genus 1 204286 0 3 2 604 601 1 28258 0 Cobetia marina species 404432 0 Salinicola genus 1 2 478 3 475 1 1771309 0 Salinicola tamaricis species genus Chromohalobacter 1 0 42054 3 2 487 1 484 Chromohalobacter salexigens species 158080 0 5 2883 114403 0 no rank 1031 2 3 0 1495768 1 genus Candidatus Evansia 1 1028 Candidatus Evansia muelleri species 1495769 0 1 572 114185 0 genus 114186 0 Candidatus Carsonella ruddii species 572 1 235572 0 1 Candidatus Portiera genus 1280 2 14 1266 1 Candidatus Portiera aleyrodidarum species 91844 0 family Kangiellaceae 1 0 1920240 14 6 3017 3003 5 59 261963 0 1 Kangiella genus 1 834 species Kangiella koreensis 0 261964 604 1 Kangiella geojedonensis species 914150 0 793 1 0 1561924 species Kangiella profundi 713 1 1144748 0 Kangiella sediminilitoris species 632 4 12 0 1934945 1 order Immundisolibacterales 2 620 3 1 family Immundisolibacteraceae 0 1934946 1 genus Immundisolibacter 0 1934947 7 618 2 0 1810504 species Immundisolibacter cernigliae 611 1 12220 14 118884 0 no rank 0 1524249 1 genus Pseudohongiella 926 2 1 1 925 species Pseudohongiella spirulinae 0 1249552 7 2 679 Sedimenticola genus 1 349742 0 1543721 0 Sedimenticola thiotaurini species 672 1 198346 0 clade 2261 1 186490 0 Candidatus Baumannia cicadellinicola species 1 2261 1608298 0 Thiolapillus genus 1 2 461 2 species Thiolapillus brandeum 0 1076588 459 1 4 4215 clade 0 32036 species Bathymodiolus septemdierum thioautotrophic gill symbiont 0 113267 1062 1 2 1376 10 1541743 0 Candidatus Ruthia genus 1 1 1366 Candidatus Ruthia magnifica species 386487 0 1777 1 410330 0 Calyptogena okutanii thioautotrophic gill symbiont species 46 3 3678 Candidatus Thioglobus genus 1 655184 0 Candidatus Thioglobus singularis species 1427364 0 1 2421 1 1211 Candidatus Thioglobus autotrophicus species 1705394 0 Vibrionales order 1 135623 0 42 44 69339 175 43 69297 Vibrionaceae family 1 641 0 3799 4 24 0 511678 1 genus Aliivibrio 948 1 species Aliivibrio salmonicida 0 40269 1 1251 Aliivibrio fischeri species 668 0 0 80852 species Aliivibrio wodanis 1 1576 30 47367 427 0 662 genus Vibrio 1 212663 0 Vibrio tasmaniensis species 1 993 species Vibrio mimicus 0 674 1 691 986 2 no rank 0 2614977 1116375 0 Vibrio sp. EJY3 species 630 1 356 1 Vibrio sp. 2521-89 species 2014742 0 1 545 0 553239 species Vibrio breoganii species group 0 717610 23822 10 680 0 Vibrio campbellii species 1 6073 0 663 species Vibrio alginolyticus 2980 1 1 1397 Vibrio owensii species 696485 0 1 634 0 766224 species Vibrio jasicida 1578 2 0 2315253 species subgroup 1 1034 0 50719 species Vibrio diabolicus 544 1 0 150340 species Vibrio antiquarius 0 190895 species Vibrio rotiferianus 1 784 691 0 Vibrio natriegens species 1 1102 species Vibrio harveyi 0 669 7157 1 2117 1 Vibrio parahaemolyticus species 670 0 516 1 Vibrio qinghaiensis species 2025808 0 1 1121 Vibrio scophthalmi species 45658 0 species Vibrio vulnificus 0 672 2805 1 0 1891919 species group 1 1070 0 29498 species Vibrio tubiashii 1 1070 650 1 species Vibrio hyugaensis 0 1534743 1 1110 0 52443 species Vibrio tapetis 0 1435069 species Vibrio tritonius 1 749 1 735 29494 0 Vibrio furnissii species 1 458 0 676 species Vibrio fluvialis 7064 1 190893 0 Vibrio coralliilyticus species 1255 1 Vibrio anguillarum species 55601 0 962 1 666 0 Vibrio cholerae species 1 581 28173 0 Vibrio nigripulchritudo species 1 827 687 0 Vibrio gazogenes species 0 657 genus Photobacterium 1 4 14089 19 1 996 0 74109 species Photobacterium profundum 438 1 species Photobacterium gaetbulicola 0 1295392 12636 1 0 38293 species Photobacterium damselae Paraphotobacterium genus 1 2042066 0 5 2 3456 0 1755811 species Paraphotobacterium marinum 1 3451 411 2 3 0 246861 1 genus Grimontia 0 673 species Grimontia hollisae 1 408 12 455 4 1 Nevskiales order 1775403 0 0 2689614 family 2 441 0 469322 genus Steroidobacter 1 2 441 22 species Steroidobacter denitrificans 0 465721 419 1 family Sinobacteraceae 0 568386 1 2 2 1098 no rank 33811 0 0 1248727 species endosymbiont of unidentified scaly snail isolate Monju 1 491 0 83406 species gamma proteobacterium HdN1 607 1 order Orbales 1 0 1240482 1 6 3104 0 1240483 1 family Orbaceae 3103 5 15 2 2 1366 Frischella genus 1 1335631 0 1 1364 0 1267021 species Frischella perrara 1193503 0 Gilliamella genus 1 2 1722 3 0 1196095 species Gilliamella apicola 1 1719 1 order Thiotrichales 0 72273 41 44112 35 14 11999 58 135616 0 Piscirickettsiaceae family 1 0 28884 genus 674 1 species Hydrogenovibrio crunogenus 0 39765 1 674 0 40222 genus Methylophaga 1 3 1764 28 754477 0 Methylophaga frappieri species 1 812 924 1 Methylophaga nitratireducenticrescens species 754476 0 Cycloclasticus genus 1 34067 0 76 4 6820 5042 2 no rank 0 2621467 2485 1 Cycloclasticus sp. P1 species 385025 0 1 2557 Cycloclasticus sp. PY97N species 728003 0 0 1329899 species Cycloclasticus zancles 1 1702 10 1653 2 1 genus Piscirickettsia 0 1237 1643 1 Piscirickettsia salmonis species 1238 0 0 933 1 genus Thiomicrospira 1030 3 6 483 1 Thiomicrospira cyclica species 147268 0 541 1 92245 0 Thiomicrospira aerophila species family Thiotrichaceae 1 0 135617 42 5 2797 0 40751 1 genus Thioploca 1300 2 3 1 1297 species Thioploca ingrica 0 40754 1021 0 1 Beggiatoa genus 1455 2 4 1 1451 0 288004 species Beggiatoa leptomitoformis 29275 15 31 0 34064 1 family Francisellaceae genus Francisella 1 0 262 288 12 27687 1260 1 954 0 Francisella persica species Francisella sp. TX077308 species 573569 0 1381 1 4848 1 species Francisella halioticida 0 549298 0 28110 species Francisella philomiragia 3798 1 0 573570 species Francisella sp. TX077310 1 2056 1 2437 0 657445 species Francisella noatunensis 2610885 0 no rank 3192 2 1458 1 0 475375 species Francisella sp. MA067296 species Francisella sp. FSC1006 0 1547445 1 1734 1 2008 species Francisella sp. CA97-1460 0 1542390 1 4799 0 263 species Francisella tularensis 622488 0 Francisella hispaniensis species 1 1620 4 2 1557 Allofrancisella genus 1 1869285 0 594679 0 Allofrancisella guangzhouensis species 1 1553 Xanthomonadales order 1 135614 0 209 54 37287 33447 39 248 32033 0 1 Xanthomonadaceae family 1229 3 22 0 83618 1 genus Pseudoxanthomonas 1 887 species Pseudoxanthomonas suwonensis 0 314722 0 415229 species Pseudoxanthomonas spadix 320 1 2532 2 1 0 2370 1 genus Xylella 2371 0 Xylella fastidiosa species 2531 1 0 40323 1 genus Stenotrophomonas 8213 9 159 4 2405 no rank 196198 0 Stenotrophomonas sp. MYb57 species 1827305 0 739 1 1793721 0 Stenotrophomonas sp. KCTC 12332 species 1 607 366 1 species Stenotrophomonas sp. LM091 0 1904944 species Stenotrophomonas sp. WZN-1 0 2005046 1 693 Stenotrophomonas rhizophila species 216778 0 1 410 0 995085 species group 3895 1 1 3895 0 40324 species Stenotrophomonas maltophilia 1 747 Stenotrophomonas acidaminiphila species 128780 0 1 597 83617 0 Stenotrophomonas nitritireducens species 0 338 genus Xanthomonas 1 17 16018 354 1 667 0 56460 species Xanthomonas vesicatoria 1 477 Xanthomonas hortorum species 56454 0 53413 0 Xanthomonas axonopodis species 1 273 2796 1 339 0 Xanthomonas campestris species Xanthomonas phaseoli species 1985254 0 1 346 29447 0 Xanthomonas albilineans species 372 1 species Xanthomonas vasicola 0 56459 290 1 355 1 Xanthomonas alfalfae species 366650 0 343 0 Xanthomonas translucens species 1102 1 456327 0 Xanthomonas euvesicatoria species 449 1 species Xanthomonas fragariae 0 48664 1 757 442694 0 Xanthomonas perforans species 363 1 Xanthomonas sacchari species 56458 0 487 1 3305 1 0 347 species Xanthomonas oryzae 2 3625 species group 643453 0 718 1 0 366648 species Xanthomonas fuscans Xanthomonas citri species 346 0 2907 1 4824 5 29 68 0 1 Lysobacter genus 0 69 species Lysobacter enzymogenes 1 559 1 1515 Lysobacter capsici species 435897 0 84531 0 Lysobacter antibioticus species 1836 1 species Lysobacter gummosus 0 262324 885 1 2 383 2 1 genus Luteimonas 0 83614 381 1 2006110 0 Luteimonas sp. 100111 species 0 1775411 family Rhodanobacteraceae 1 14 3631 55 587 2 9 0 75309 1 genus Rhodanobacter species Rhodanobacter denitrificans 0 666685 1 578 6 2 325 Frateuria genus 1 70411 0 319 1 species Frateuria aurantia 0 81475 genus 0 2233801 1 345 species Xanthomonadales bacterium D13 0 2021234 345 1 Luteibacter genus 1 242605 0 7 2 412 1 405 0 242606 species Luteibacter rhizovicinus 1 genus Dyella 0 231454 12 1306 4 1 452 0 445710 species Dyella thiooxydans 1 414 0 1379159 species Dyella jiangningensis 428 1 0 231455 species Dyella japonica 0 323413 genus Dokdonella 1 2 601 3 598 1 Dokdonella koreensis species 323415 0 0 1692040 1 order Acidiferrobacterales 1228 6 6 1 family Acidiferrobacteraceae 0 1692041 9 1222 5 15 2 443 Sulfuricaulis genus 1 1744881 0 1 428 species Sulfuricaulis limicola 0 1620215 2 770 5 0 1692042 genus Sulfurifustis 1 765 1 Sulfurifustis variabilis species 1675686 0 20 21 21707 order Legionellales 1 0 118969 family Legionellaceae 1 0 444 60 15 18764 465 0 Tatlockia genus 1 2 1002 5 1 997 451 0 Tatlockia micdadei species 12 17702 134 0 445 genus Legionella 1 1191 1 449 0 Legionella hackeliae species Legionella clemsonensis species 1867846 0 1218 1 0 446 species Legionella pneumophila 1 4987 66969 0 Legionella waltersii species 1 1269 1 1820 Legionella endosymbiont of Polyplax serrata species 2005262 0 Legionella fallonii species 96230 0 1463 1 503 1 species Legionella spiritensis 0 452 1 1019 45067 0 Legionella lansingensis species species Legionella oakridgensis 0 29423 903 1 1 1595 0 450 species Legionella longbeachae species Legionella sainthelensi 0 28087 1600 1 Coxiellaceae family 1 118968 0 43 5 2923 981 1 0 134284 no rank 1592897 0 Coxiella-like endosymbiont species 1 981 776 0 1 Coxiella genus 1899 3 37 912 1 777 0 Coxiella burnetii species 0 2676648 no rank 950 1 950 1 species Coxiella endosymbiont of Amblyomma americanum 0 325775 1 Chromatiales order 135613 0 155 17739 51 0 449719 family Granulosicoccaceae 1 3 1159 12 35 2 1147 genus Granulosicoccus 1 0 437504 0 437505 species Granulosicoccus antarcticus 1 1112 0 1738654 family Woeseiaceae 1 3 604 2 1 genus Woeseia 0 1738655 8 602 2 0 1548547 species Woeseia oceani 1 594 2 546 0 451214 no rank genus Thiohalobacter 1 0 1273155 14 2 546 1 532 585455 0 Thiohalobacter thiocyanaticus species 6 4 680 Halothiobacillaceae family 1 255526 0 genus Halothiobacillus 1 0 109262 35 3 674 1 314 0 2636392 no rank 1 314 Halothiobacillus sp. LS2 species 1860122 0 325 1 species Halothiobacillus neapolitanus 0 927 1676141 0 Wenzhouxiangellaceae family 1 3 675 2 2 673 2 0 1676142 genus Wenzhouxiangella 1 671 1 0 1579979 species Wenzhouxiangella marina 61 8680 18 1 family Chromatiaceae 0 1046 1227 0 Nitrosococcus genus 1 4 2289 20 1 539 1229 0 Nitrosococcus oceani species species Nitrosococcus halophilus 0 133539 1 487 0 473531 species Nitrosococcus watsonii 1 1243 0 85072 1 genus Allochromatium 490 2 1 489 1 1049 0 Allochromatium vinosum species 7 2 871 genus Candidatus Nitrosoglobus 1 0 1980513 Candidatus Nitrosoglobus terrae species 1630141 0 1 864 0 53392 1 genus Thiodictyon 2563 2 34 2529 1 0 1166950 species Candidatus Thiodictyon syntrophicum 1 genus Thiocystis 0 13724 3 565 2 Thiocystis violascens species 73141 0 1 562 649 2 5 156885 0 1 Thioflavicoccus genus Thioflavicoccus mobilis species 80679 0 1 644 82569 0 no rank 1 556 1 556 Chromatiaceae bacterium 2141T.STBD.0c.01a species 1978339 0 12 636 2 1 Marichromatium genus 85076 0 0 37487 species Marichromatium purpuratum 1 624 0 72276 family Ectothiorhodospiraceae 1 17 5240 77 546 2 2 0 1765964 1 genus Acidihalobacter Acidihalobacter prosperus species 160660 0 544 1 81 2521 6 1 genus Thioalkalivibrio 0 106633 108010 0 Thioalkalivibrio paradoxus species 1 466 1 460 0 2621013 no rank 0 396595 species Thioalkalivibrio sp. K90mix 1 460 1 688 1033854 0 Thioalkalivibrio sulfidiphilus species 1 448 186931 0 Thioalkalivibrio nitratireducens species species Thioalkalivibrio versutus 0 106634 378 1 501 1 genus 0 1051 1 501 0 2684909 no rank 0 1442136 species Ectothiorhodospira sp. BSL-9 501 1 16 3 778 genus Spiribacter 1 0 1335745 338 1 species Spiribacter salinus 0 1335746 1335757 0 Spiribacter curvatus species 1 424 133193 0 1 Alkalilimnicola genus 438 2 9 0 351052 species Alkalilimnicola ehrlichii 429 1 4 379 2 1 Halorhodospira genus 85108 0 1 375 species Halorhodospira halophila 0 1053 18149 32 11 0 135625 1 order Pasteurellales Pasteurellaceae family 1 712 0 108 31 18138 0 416916 genus Aggregatibacter 1 3 1114 5 536 1 species Aggregatibacter aphrophilus 0 732 species Aggregatibacter actinomycetemcomitans 0 714 1 573 3253 3 18 0 745 1 genus Pasteurella 1 2341 species Pasteurella multocida 0 747 1 894 species Pasteurella dagmatis 0 754 3 2 1075 genus Glaesserella 1 0 2094023 1 1072 species Glaesserella parasuis 0 738 0 724 1 genus Haemophilus 6184 6 20 1 3249 727 0 Haemophilus influenzae species 729 0 Haemophilus parainfluenzae species 1 621 no rank 0 2609962 1 556 1 556 0 712310 species Haemophilus sp. oral taxon 036 [Haemophilus] ducreyi species 730 0 1 1267 1 471 0 249188 species Haemophilus pittmaniae 1 genus Actinobacillus 0 713 17 1753 5 Actinobacillus pleuropneumoniae species 715 0 564 1 0 67854 species Actinobacillus succinogenes 266 1 445 1 716 0 Actinobacillus suis species 1 461 species Actinobacillus equuli 0 718 26 4 1923 genus Mannheimia 1 0 75984 591 1 75985 0 Mannheimia haemolytica species 453 1 0 2645054 no rank species Mannheimia sp. USDA-ARS-USMARC-1261 0 1432056 1 453 853 1 85404 0 Mannheimia varigena species 6 2 617 Gallibacterium genus 1 155493 0 611 1 species Gallibacterium anatis 0 750 2 925 2 1 Histophilus genus 214906 0 0 731 species Histophilus somni 1 923 697331 0 Basfia genus 1 2 346 5 0 157673 species [Mannheimia] succiniciproducens 1 341 0 476528 genus 840 1 species Bibersteinia trehalosi 0 47735 840 1 order 0 135615 3 435 1 family Cardiobacteriaceae 0 868 6 435 3 429 2 4 0 869 1 genus Dichelobacter 425 1 870 0 Dichelobacter nodosus species 79133 104 211 135622 0 1 Alteromonadales order 0 267888 1 family Pseudoalteromonadaceae 24874 25 31 468 24 24843 genus Pseudoalteromonas 1 0 53246 Pseudoalteromonas translucida species 166935 0 856 1 228 0 Pseudoalteromonas haloplanktis species 1 921 species Pseudoalteromonas aliena 0 247523 1 1081 no rank 194690 0 5 6752 1 837 0 234831 species Pseudoalteromonas sp. SM9913 1514074 0 Pseudoalteromonas sp. NC201 species 1 2854 1 1018 0 283699 species Pseudoalteromonas sp. Bsw20308 1 938 species Pseudoalteromonas sp. 13-15 0 1761891 0 1720343 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 1105 Pseudoalteromonas atlantica species 288 0 1 1433 652 1 Pseudoalteromonas piscicida species 43662 0 1 1050 1348114 0 Pseudoalteromonas piratica species 1 1047 species Pseudoalteromonas arctica 0 394751 species Pseudoalteromonas luteoviolacea 0 43657 1045 1 933 1 0 28109 species Pseudoalteromonas nigrifaciens 850 1 species Pseudoalteromonas espejiana 0 28107 835 1 species Pseudoalteromonas agarivorans 0 176102 1 1822 0 298657 species Pseudoalteromonas spongiae 998 1 species Pseudoalteromonas phenolica 0 161398 783 1 Pseudoalteromonas issachenkonii species 152297 0 1 538 0 43658 species Pseudoalteromonas rubra 1 1249 Pseudoalteromonas tunicata species 314281 0 species Pseudoalteromonas marina 0 267375 1 791 43659 0 Pseudoalteromonas tetraodonis species 1 739 family Alteromonadaceae 1 0 72275 65 28 20516 2 2 746 Agarivorans genus 1 261825 0 species Agarivorans gilvus 0 680279 744 1 0 226 1 genus Alteromonas 9538 10 103 1512 1 0 314275 species Alteromonas mediterranea 0 589873 species Alteromonas australica 1 826 1 877 species Alteromonas addita 0 287094 968 1 species Alteromonas stellipolaris 0 233316 2277 3 no rank 2614992 0 1 732 Alteromonas sp. Mac1 species 1777491 0 species Alteromonas sp. RW2A1 0 1917158 806 1 0 2058133 species Alteromonas sp. MB-3u-76 1 739 species Alteromonas naphthalenivorans 0 715451 893 1 28108 0 Alteromonas macleodii species 1 2082 1895 1 genus 1621534 0 1 1895 Paraglaciecola psychrophila species 326544 0 10 5617 166 0 2742 genus Marinobacter 1 Marinobacter similis species 1420916 0 1 442 1 498 0 330734 species Marinobacter psychrophilus 1949 3 no rank 83889 0 1 808 species Marinobacter sp. CP1 0 1671721 540 1 species Marinobacter sp. BSs20148 0 490759 0 1749259 species Marinobacter sp. LQ44 1 601 903 1 2743 0 Marinobacter hydrocarbonoclasticus species 1420917 0 Marinobacter salarius species 1 591 1033846 0 Marinobacter adhaerens species 598 1 1 470 1874317 0 Marinobacter salinus species 89404 0 Glaciecola genus 1 3 1860 14 952 1 species Glaciecola nitratireducens 0 300231 no rank 0 2618684 1 894 1 894 983545 0 Glaciecola sp. 4H-3-7+YE-5 species 795 1 genus 0 1751872 795 1 1526571 0 Lacimicrobium alkaliphilum species 40 25 17620 Shewanellaceae family 1 267890 0 1 Shewanella genus 22 0 185 17580 24 1240 1 species Shewanella psychrophila 0 225848 1 586 0 70864 species Shewanella pealeana 0 60961 species Shewanella woodyi 1 1037 1 691 0 24 species Shewanella putrefaciens 1 766 271097 0 Shewanella sediminis species 1 354 260364 0 Shewanella marisflavi species 1 770 Shewanella piezotolerans species 404011 0 93973 0 Shewanella japonica species 1 1130 no rank 196818 0 2872 6 Shewanella sp. ANA-3 species 94122 0 464 1 417 1 Shewanella sp. MR-7 species 60481 0 1 364 Shewanella sp. MR-4 species 60480 0 0 351745 species Shewanella sp. W3-18-1 1 610 2029986 0 Shewanella sp. WE21 species 430 1 1 587 Shewanella sp. Pdp11 species 2059264 0 Shewanella violacea species 60217 0 1101 1 1942 1 0 271098 species Shewanella halifaxensis 1 394 0 70863 species Shewanella oneidensis 0 62322 species Shewanella baltica 1707 1 Shewanella frigidimarina species 56812 0 1 1040 species Shewanella amazonensis 0 60478 1 352 species Shewanella loihica 0 359303 1 335 642 1 species Shewanella denitrificans 0 192073 species Shewanella bicestrii 0 2018305 436 1 1 Ferrimonadaceae family 267892 0 1 421 3 2 420 3 0 44011 genus Ferrimonas 1 Ferrimonas balearica species 44012 0 417 1 4 4 2635 family Psychromonadaceae 1 0 267894 10 2631 3 1 genus Psychromonas 0 67572 Psychromonas ingrahamii species 357794 0 1 1416 1205 1 no rank 2614957 0 Psychromonas sp. CNPT3 species 314282 0 1205 1 1412 3 13 267891 0 1 Moritellaceae family 6 1399 2 1 Moritella genus 58050 0 1393 1 0 80854 species Moritella viscosa 267889 0 1 Colwelliaceae family 9574 9 13 1 genus Colwellia 0 28228 46 8279 6 3 4949 no rank 196834 0 1 1827 species Colwellia sp. PAMC 21821 0 1816219 1615 1 species Colwellia sp. PAMC 20917 0 1816218 1507 1 0 58049 species Colwellia sp. MT41 1 1577 species Colwellia psychrerythraea 0 28229 1707 1 0 1967665 species Colwellia beringensis 2 1282 5 0 1518149 genus Thalassotalea 1 1 1277 1763536 0 Thalassotalea crassostreae species 1 1870 6 1 family Idiomarinaceae 0 267893 0 135575 genus Idiomarina 1 5 1869 35 135577 0 Idiomarina loihiensis species 475 1 0 1096243 species Idiomarina piscisalsi 491 1 2614829 0 no rank 868 2 0 2055892 species Idiomarina sp. X4 1 487 0 2100422 species Idiomarina sp. OT37-5b 381 1 1 order Cellvibrionales 0 1706369 26 15105 30 64 13 6227 family Cellvibrionaceae 1 0 1706371 2036021 0 Agarilytica genus 1 2 1434 2 0 1737490 species Agarilytica rhodophyticola 1 1432 0 447467 genus Simiduia 1 2 611 3 1 608 447471 0 Simiduia agarivorans species 10 0 Cellvibrio genus 1 4 2171 19 699 1 species Cellvibrio japonicus 0 155077 2 1453 2624793 0 no rank Cellvibrio sp. PSBB006 species 1987723 0 750 1 1945512 0 Cellvibrio sp. PSBB023 species 1 703 1053 2 2 316625 0 1 Saccharophagus genus 1 1051 Saccharophagus degradans species 86304 0 2425 0 Teredinibacter genus 1 2 894 12 1 882 2426 0 Teredinibacter turnerae species 1706373 0 Microbulbiferaceae family 1 5 2373 14 63 2359 4 1 genus Microbulbifer 0 48073 1769779 0 Microbulbifer aggregans species 805 1 Microbulbifer thermotolerans species 252514 0 770 1 Microbulbifer agarilyticus species 260552 0 1 721 13 4 3151 family Halieaceae 1 0 1706372 Halioglobus genus 1 1217416 0 67 3 3138 species Halioglobus japonicus 0 930805 1315 1 Halioglobus pacificus species 930806 0 1 1756 7 3328 74 0 1706375 family Spongiibacteraceae 1 17 922 2 1 genus Zhongshania 0 1434050 1 905 Zhongshania aliphaticivorans species 1470434 0 11 2 989 genus Spongiibacter 1 0 630749 no rank 0 2631504 1 978 1620392 0 Spongiibacter sp. IMCC21906 species 978 1 1 1343 2 1 genus Oceanicoccus 0 1084558 1 1342 0 716816 species Oceanicoccus sagamiensis 91347 0 Enterobacterales order 1 250 143605 457 1903411 0 1 Yersiniaceae family 20029 38 49 genus 0 929812 362 1 1 362 species Gibbsiella quercinecans 0 929813 Serratia genus 1 613 0 215 16 8175 species Serratia fonticola 0 47917 864 1 1 2340 0 615 species Serratia marcescens species Serratia proteamaculans 0 28151 1 269 no rank 0 2647522 8 2832 300 1 Serratia sp. MYb239 species 2033438 0 215 1 species Serratia sp. AS12 0 768490 372 1 0 1327989 species Serratia sp. FS14 304 1 671990 0 Serratia sp. FGI94 species Serratia sp. SSNIH1 species 1758196 0 308 1 Serratia sp. AS13 species 768493 0 215 1 774 1 0 488142 species Serratia sp. SCBI species Serratia sp. ATCC 39006 0 104623 344 1 1 309 Serratia rubidaea species 61652 0 61651 0 Serratia ficaria species 332 1 1 599 species Serratia plymuthica 0 82996 415 1 Serratia liquefaciens species 614 0 1 genus Chania 0 1745211 6 257 2 species Chania multitudinisentens 0 1639108 251 1 908 4 21 0 34037 1 genus Rahnella 627 2 0 2635087 no rank 1805933 0 Rouxiella sp. ERMR1:05 species 1 356 0 741091 species Rahnella sp. Y9602 271 1 34038 0 Rahnella aquatilis species 260 1 10275 13 124 0 629 1 genus Yersinia species Yersinia aldovae 0 29483 470 1 species Yersinia ruckeri 0 29486 1 515 0 28152 species Yersinia kristensenii 1 385 4299 3 species group 0 1649845 633 0 Yersinia pseudotuberculosis species 1 1208 0 367190 species Yersinia similis 1 1708 0 632 species Yersinia pestis 1383 1 Yersinia rohdei species 29485 0 470 1 631 0 Yersinia intermedia species 1 380 no rank 2653513 0 1 353 353 1 1839800 0 Yersinia sp. FDAARGOS_228 species 0 630 species Yersinia enterocolitica 1709 1 344 1 0 263819 species Yersinia aleksiciae Yersinia frederiksenii species 29484 0 1 1226 3 1 genus Rouxiella 0 1565532 417 3 11 1903416 0 1 Budviciaceae family 82984 0 Pragia genus 1 2 406 3 82985 0 Pragia fontium species 1 403 407 122 61985 family Enterobacteriaceae 1 0 543 2 859 1 158483 0 Cedecea genus 1 species Cedecea neteri 0 158822 858 1 0 191675 no rank 11357 20 20 11357 clade 0 84563 1 633 199891 0 clade secondary endosymbiont of Trabutina mannipara species 1835721 0 633 1 146507 0 clade 1622 4 0 1199245 species secondary endosymbiont of Ctenarytaina eucalypti 1 285 secondary endosymbiont of Heteropsylla cubana species 134287 0 1 601 1 genus Candidatus Hamiltonella 0 568987 9 736 2 1 727 0 138072 species Candidatus Hamiltonella defensa 1 540 0 1906661 genus Candidatus Gullanella endobia species 1070130 0 1 540 804 2 1 0 1906660 1 genus Candidatus Mikella 803 1 1778264 0 Candidatus Mikella endobia species 5761 7 clade 0 84564 59 5761 7 1 genus Candidatus Blochmannia 0 203804 1145 1 species Candidatus Blochmannia vafer 0 251535 no rank 0 711328 1936 2 1 1064 0 1505597 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1 872 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 1505596 0 772 1 0 101534 species Candidatus Blochmannia pennsylvanicus species Candidatus Blochmannia floridanus 0 203907 1046 1 0 251542 species Candidatus Blochmannia chromaiodes 1 803 258 1 genus 0 1906659 Candidatus Hoaglandella endobia species 1778263 0 1 258 genus Candidatus Tachikawaea 1 0 1682492 6 2 1530 Candidatus Tachikawaea gelatinosa species 1410383 0 1524 1 genus Candidatus Doolittlea 1 0 1906657 3 2 209 Candidatus Doolittlea endobia species 1778262 0 206 1 143 10 10144 genus Klebsiella 1 0 570 794 1 1134687 0 Klebsiella michiganensis species 244366 0 Klebsiella variicola species 536 1 Klebsiella quasipneumoniae species 1463165 0 1 330 1 1460 species Klebsiella oxytoca 0 571 species Klebsiella pneumoniae 0 573 1 4223 1 1792 Klebsiella aerogenes species 548 0 302 1 2026240 0 Klebsiella quasivariicola species 564 2 2608929 0 no rank 1 300 1905288 0 Klebsiella sp. LTGPAF-6F species Klebsiella sp. M5al species 1934254 0 264 1 1 genus Salmonella 0 590 15 6835 3 28901 0 Salmonella enterica species 6327 1 species Salmonella bongori 0 54736 1 493 4 762 4 0 1330545 genus Lelliottia 1 157 1 69220 0 Lelliottia nimipressuralis species 446 1 0 61646 species Lelliottia amnigena 1 155 1907578 0 Lelliottia jeotgali species 14 4767 105 544 0 Citrobacter genus 1 1 245 545 0 Citrobacter koseri species 1344959 0 species group 7 2608 400 1 species Citrobacter werkmanii 0 67827 178 1 2077147 0 Citrobacter freundii complex sp. CFNIH3 species 1 1116 546 0 Citrobacter freundii species 210 1 Citrobacter freundii complex sp. CFNIH9 species 2077149 0 1 167 0 2077148 species Citrobacter freundii complex sp. CFNIH4 1 359 Citrobacter braakii species 57706 0 1 178 Citrobacter freundii complex sp. CFNIH2 species 2066049 0 541 1 Citrobacter amalonaticus species 35703 0 2644389 0 no rank 2 413 245 1 species Citrobacter sp. CFNIH10 0 1920110 species Citrobacter sp. FDAARGOS_156 0 1702170 1 168 1 600 species Citrobacter farmeri 0 67824 255 1 67825 0 Citrobacter rodentium species 0 1335483 1 genus Shimwellia 199 2 6 Shimwellia blattae species 563 0 193 1 1 Candidatus Ishikawaella genus 409304 0 6 1258 2 1 1252 species Candidatus Ishikawaella capsulata 0 168169 0 1048757 genus Candidatus Moranella 1 2 195 2 0 1048758 species Candidatus Moranella endobia 1 193 284 1 genus 0 579 1 284 Kluyvera intermedia species 61648 0 no rank 0 36866 2026 5 Enterobacteriaceae bacterium ENNIH2 species 1920109 0 226 1 species Plautia stali symbiont 0 891974 1082 1 species Enterobacteriaceae bacterium ENNIH1 0 2066051 1 249 1 199 0 693444 species Enterobacteriaceae bacterium strain FGI 57 270 1 0 1920128 species Enterobacteriaceae bacterium ENNIH3 9272 5 33 561 0 1 Escherichia genus Escherichia marmotae species 1499973 0 228 1 Escherichia coli species 562 0 8250 1 564 0 Escherichia fergusonii species 1 210 551 1 Escherichia albertii species 208962 0 0 160674 genus Raoultella 1 3 1131 4 1 854 species Raoultella ornithinolytica 0 54291 0 575 species Raoultella planticola 273 1 401618 0 1 Candidatus Riesia genus 912 2 8 Candidatus Riesia pediculicola species 401619 0 1 904 3 810 3 1 genus Pluralibacter 0 1330546 61647 0 Pluralibacter gergoviae species 1 487 320 1 species [Enterobacter] lignolyticus 0 1334193 0 547 genus Enterobacter 1 22 6717 253 1506 9 no rank 0 2608935 1 140 2051905 0 Enterobacter sp. CRENT-193 species 399742 0 Enterobacter sp. 638 species 1 200 species Enterobacter sp. R4-368 0 1166130 1 274 1 120 species Enterobacter sp. ODB01 0 1827481 1 223 0 1692238 species Enterobacter sp. FY-07 115 1 Enterobacter sp. E20 species 1560339 0 Enterobacter sp. Crenshaw species 1977566 0 123 1 197 1 species Enterobacter sp. SA187 0 1914861 1 114 1868135 0 Enterobacter sp. HK169 species 12 4958 species group 354276 0 61645 0 Enterobacter asburiae species 486 1 114 1 208224 0 Enterobacter kobei species 1 164 species Enterobacter cancerogenus 0 69218 1 152 species Enterobacter cloacae complex 'Hoffmann cluster IV' 0 1812935 0 2757714 no rank 3 477 144 1 species Enterobacter cloacae complex bacterium 0 2027919 0 1915310 species Enterobacter cloacae complex sp. ECNIH7 1 153 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 2077137 180 1 1 species Enterobacter hormaechei 0 158836 900 1257 3 1 152 0 1296536 subspecies Enterobacter xiangfangensis 1 205 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 1812934 0 179 1 Enterobacter ludwigii species 299767 0 Enterobacter cloacae species 550 0 1 2129 419 4 26 0 620 1 genus Shigella 197 1 0 622 species Shigella dysenteriae 623 0 Shigella flexneri species 1 87 109 1 2629414 0 no rank 109 1 species Shigella sp. PAMC 28760 0 1813821 37 1707 8 1 Cronobacter genus 413496 0 species Cronobacter malonaticus 0 413503 206 1 species Cronobacter muytjensii 0 413501 1 169 1 210 Cronobacter dublinensis species 413497 0 Cronobacter universalis species 535744 0 203 1 224 1 0 413502 species Cronobacter turicensis 1163710 0 Cronobacter condimenti species 1 222 1 436 Cronobacter sakazakii species 28141 0 1330547 0 1 Kosakonia genus 1238 5 15 0 497725 species Kosakonia oryzae 319 1 1 227 Kosakonia cowanii species 208223 0 species Kosakonia sacchari 0 1158459 1 267 283686 0 Kosakonia radicincitans species 410 1 10 686 4 1 Leclercia genus 83654 0 2627398 0 no rank 443 2 202 1 1920116 0 Leclercia sp. LSNIH3 species Leclercia sp. LSNIH1 species 1920114 0 241 1 Leclercia adecarboxylata species 83655 0 233 1 48 12907 22 1 family Morganellaceae 0 1903414 0 637 1 genus Arsenophonus 1546 2 11 1 1535 Arsenophonus symbiont of Lipoptena fortisetosa species 634113 0 19 2235 4 1 Photorhabdus genus 29487 0 715 1 29488 0 Photorhabdus luminescens species 0 574560 species Photorhabdus temperata 1 595 906 1 species Photorhabdus asymbiotica 0 291112 8 3 3341 Proteus genus 1 583 0 1 1281 0 585 species Proteus vulgaris species Proteus mirabilis 0 584 1 2052 8 4 2355 genus Providencia 1 0 586 1001 1 588 0 Providencia stuartii species species Providencia alcalifaciens 0 126385 1 472 1 874 species Providencia rettgeri 0 587 3 683 2 1 Morganella genus 581 0 680 1 Morganella morganii species 582 0 0 626 genus Xenorhabdus 1 6 2699 28 0 628 species Xenorhabdus nematophila 1 429 Xenorhabdus hominickii species 351679 0 1 497 1 458 Xenorhabdus doucetiae species 351671 0 442 1 species Xenorhabdus poinarii 0 40577 1 845 species Xenorhabdus bovienii 0 40576 no rank 0 451511 2 1040 0 702 1 genus Plesiomonas 1040 2 2 0 703 species Plesiomonas shigelloides 1 1038 0 1903410 family Pectobacteriaceae 1 20 6894 22 Sodalis genus 1 84565 0 41 5 1700 1929246 0 Sodalis endosymbiont of Henestaris halophilus species 583 1 381 1 1239307 0 Sodalis praecaptivus species Sodalis glossinidius species 63612 0 342 1 species Candidatus Sodalis pierantonius 0 1486991 353 1 1 genus Pectobacterium 0 122277 51 2595 6 311 1 Pectobacterium polaris species 2042057 0 1 631 Pectobacterium parmentieri species 1905730 0 29471 0 Pectobacterium atrosepticum species 308 1 943 1 species Pectobacterium carotovorum 0 554 species Pectobacterium wasabiae 0 55208 351 1 0 71655 genus Brenneria 1 2 376 2 1 374 0 1109412 species Brenneria goodwinii 204037 0 1 Dickeya genus 2201 6 42 518 1 Dickeya solani species 1089444 0 267 1 species Dickeya dianthicola 0 204039 252 1 species Dickeya fangzhongdai 0 1778540 854 1 Dickeya zeae species 204042 0 268 1 204038 0 Dickeya dadantii species 1 family Erwiniaceae 0 1903409 58 27236 28 41 3187 2 1 genus Wigglesworthia 0 51228 1 3146 species Wigglesworthia glossinidia 0 51229 2 638 genus 2100764 0 1 350 Pantoea calida species 665913 0 1 288 665914 0 Pantoea gaviniae species 8 2424 41 0 551 genus Erwinia 1 Erwinia amylovora species 552 0 271 1 0 1922217 species Candidatus Erwinia sp. ErCipseudotaxifoliae 1 645 0 338565 species Erwinia tasmaniensis 1 237 482 1 species Erwinia billingiae 0 182337 1 231 0 2622719 no rank Erwinia sp. Ejp617 species 215689 0 1 231 1 248 Erwinia pyrifoliae species 79967 0 0 1619313 species Erwinia gerundensis 1 269 82986 0 1 Tatumella genus 321 2 2 319 1 53336 0 Tatumella citrea species 32199 0 1 Buchnera genus 15884 2 35 15849 1 Buchnera aphidicola species 9 0 130 11 4724 Pantoea genus 1 53335 0 0 2630326 no rank 905 3 Pantoea sp. PSNIH1 species 1484158 0 260 1 300 1 Pantoea sp. PSNIH2 species 1484157 0 592316 0 Pantoea sp. At-9b species 345 1 species Pantoea rwandensis 0 1076550 244 1 335 1 66269 0 Pantoea stewartii species 1 513 0 1654067 species group 1 513 species Pantoea agglomerans 0 549 0 470934 species Pantoea vagans 1 705 1 264 species Pantoea alhagi 0 1891675 Candidatus Pantoea carbekii species 1235990 0 1 1087 541 1 553 0 Pantoea ananatis species 1 Hafniaceae family 1903412 0 22 12640 14 635 0 Edwardsiella genus 1 8 11166 86 1 341 species Edwardsiella ictaluri 0 67780 328 1 species Edwardsiella piscicida 0 1263550 species Edwardsiella tarda 0 636 1 8915 2676541 0 no rank 2 832 Edwardsiella sp. EA181011 species 1578828 0 1 451 1 381 0 1650654 species Edwardsiella sp. LADL05-105 1821960 0 Edwardsiella anguillarum species 1 433 1 231 species Edwardsiella hoshinae 0 93378 300 2 10 82982 0 1 Obesumbacterium genus Obesumbacterium proteus species 82983 0 290 1 1 Hafnia genus 568 0 13 1152 3 849 1 Hafnia alvei species 569 0 1 290 no rank 0 2621980 1 290 0 1848580 species Hafnia sp. CBA7124 phylum 68297 0 6 1987 1 6 1987 class Dictyoglomia 1 0 203486 0 203487 1 order Dictyoglomales 1986 5 13 203488 0 Dictyoglomaceae family 1 4 1973 11 1 genus Dictyoglomus 0 13 7 1962 3 1 1032 Dictyoglomus turgidum species 513050 0 14 0 Dictyoglomus thermophilum species 1 923 clade 0 2498710 4 506 phylum 0 67814 506 4 class Caldisericia 1 0 693071 4 4 506 502 3 2 693072 0 1 Caldisericales order 2 500 3 0 693073 family Caldisericaceae 1 genus 0 693074 497 1 497 1 Caldisericum exile species 693075 0 1679 6959666 0 1783272 clade phylum 0 67819 416 4 Fimbriimonadia class 1 1663419 0 12 4 416 1663425 0 1 Fimbriimonadales order 404 3 1 family 1663426 0 2 403 403 2 3 1005038 0 1 Fimbriimonas genus Fimbriimonas ginsengisoli species 1005039 0 400 1 0 1239 1 phylum Firmicutes 430169 699 118 171 161749 205 1 Clostridia class 186801 0 21 35 19301 Thermoanaerobacterales order 1 68295 0 0 186814 family Thermoanaerobacteraceae 1 17 9095 18 Thermoanaerobacter genus 1 1754 0 307 9 7549 1 911 Thermoanaerobacter mathranii species 583357 0 1 836 species Thermoanaerobacter brockii 0 29323 1886 2 2636821 0 no rank 1 898 species Thermoanaerobacter sp. X514 0 399726 988 1 0 573062 species Thermoanaerobacter sp. X513 1 939 species Thermoanaerobacter wiegelii 0 46354 0 108150 species Thermoanaerobacter italicus 1 948 886 1 species Thermoanaerobacter kivui 0 2325 1 836 Thermoanaerobacter pseudethanolicus species 496866 0 249529 0 genus 1 621 Caldanaerobacter subterraneus species 911092 0 621 1 no rank 42857 0 287 4 Ammonifex genus 1 42837 0 2 2 106 1 104 42838 0 Ammonifex degensii species 0 44260 1 genus Moorella 181 2 4 177 1 Moorella thermoacetica species 1525 0 1 426 genus 0 129957 1 426 0 129958 species Carboxydothermus hydrogenoformans 140458 0 genus 1 194 species Thermacetogenium phaeum 0 85874 194 1 3 1056 3 1 family Thermodesulfobiaceae 0 227387 1053 2 1 0 227388 1 genus Thermodesulfobium 1 1052 184064 0 Thermodesulfobium narugense species 543371 0 Thermoanaerobacterales Family III. Incertae Sedis family 1 13 8928 28 genus Thermoanaerobacterium 1 0 28895 6 3 2390 species Thermoanaerobacterium thermosaccharolyticum 0 1517 1553 1 831 1 0 29329 species Thermoanaerobacterium xylanolyticum 9 6510 126 0 44000 genus Caldicellulosiruptor 1 830 1 species Caldicellulosiruptor bescii 0 31899 species Caldicellulosiruptor lactoaceticus 0 52766 690 1 876 1 Caldicellulosiruptor saccharolyticus species 44001 0 1 701 species Caldicellulosiruptor kristjanssonii 0 52765 species Caldicellulosiruptor kronotskyensis 0 413889 918 1 species Caldicellulosiruptor owensensis 0 55205 749 1 819 1 Caldicellulosiruptor obsidiansis species 717609 0 801 1 Caldicellulosiruptor hydrothermalis species 413888 0 family 0 543372 1 201 201 1 genus 0 252965 Mahella australiensis species 252966 0 1 201 11 6927 12 1 order Halanaerobiales 0 53433 1 family Halobacteroidaceae 0 53434 9 2205 5 genus Acetohalobium 1 0 28186 1 2 745 744 1 Acetohalobium arabaticum species 28187 0 1 Halobacteroides genus 42417 0 7 1451 2 1 1444 species Halobacteroides halobius 0 42422 1 family Halanaerobiaceae 0 972 15 4711 6 1 Halothermothrix genus 32636 0 45 802 2 Halothermothrix orenii species 31909 0 757 1 3 3894 17 0 2330 genus Halanaerobium 1 656519 0 Halanaerobium hydrogeniformans species 1781 1 1 2096 0 2331 species Halanaerobium praevalens 4 901 4 1 order Natranaerobiales 0 485256 897 3 5 0 485255 1 family Natranaerobiaceae 6 2 892 genus Natranaerobius 1 0 375928 0 375929 species Natranaerobius thermophilus 886 1 828 2 2770089 0 order family 0 2770093 206 1 1 206 genus 291988 0 206 1 species Thermosediminibacter oceani 0 291990 1 622 2770092 0 family genus 499228 0 1 622 1 622 Tepidanaerobacter acetatoxydans species 499229 0 350 151 133621 Clostridiales order 1 186802 0 family Peptococcaceae 1 0 186807 23 28 7901 1 Desulfosporosinus genus 79206 0 8 1742 4 species Desulfosporosinus acidiphilus 0 885581 1 609 Desulfosporosinus orientis species 1563 0 1 596 529 1 Desulfosporosinus meridiei species 79209 0 496 1 genus 2282740 0 0 102134 species Desulfotomaculum gibsoniae 496 1 1 genus Dehalobacter 0 56112 18 819 4 2635733 0 no rank 575 2 281 1 species Dehalobacter sp. DCA 0 1147129 1131462 0 Dehalobacter sp. CF species 1 294 Dehalobacter restrictus species 55583 0 1 226 0 51196 1 genus Syntrophobotulus 295 2 4 291 1 51197 0 Syntrophobotulus glycolicus species 1 Desulfitobacterium genus 36853 0 7 1568 5 372 1 species Desulfitobacterium dichloroeliminans 0 233055 Desulfitobacterium hafniense species 49338 0 455 1 340 1 species Desulfitobacterium dehalogenans 0 36854 1 394 species Desulfitobacterium metallireducens 0 142877 0 51514 genus 1 502 Dehalobacterium formicoaceticum species 51515 0 502 1 474 1 genus 2282742 0 species Desulfotomaculum acetoxidans 0 58138 474 1 0 471826 1 genus Candidatus Desulforudis 206 2 5 0 471827 species Candidatus Desulforudis audaxviator 201 1 0 278993 1 genus Thermincola 336 2 3 333 1 863643 0 Thermincola potens species 1440 5 19 0 1562 1 genus Desulfotomaculum Desulfotomaculum ruminis species 1564 0 311 1 59610 0 Desulfotomaculum reducens species 489 1 Desulfotomaculum nigrificans species 1565 0 251 1 species Desulfotomaculum ferrireducens 0 1833852 370 1 1 family Peptostreptococcaceae 0 186804 22 9545 12 44259 0 1 Filifactor genus 587 2 1 0 143361 species Filifactor alocis 586 1 1870884 0 Clostridioides genus 1 2 4554 8 4546 1 species Clostridioides difficile 0 1496 0 1411023 no rank 1 694 Peptostreptococcaceae bacterium oral taxon 929 species 2081703 0 1 694 4 328 2 1 genus Peptoclostridium 0 1481960 324 1 species Peptoclostridium acidaminophilum 0 1731 Paeniclostridium genus 1 1849828 0 1 2 2121 1 2120 0 1505 species Paeniclostridium sordellii 1 genus Acetoanaerobium 0 186831 2 1239 2 1511 0 Acetoanaerobium sticklandii species 1237 1 family Eubacteriaceae 1 0 186806 3 5 1554 835 2 8 0 1730 1 genus Eubacterium 0 1736 species Eubacterium limosum 1 827 2 716 2 1 genus Acetobacterium 0 33951 0 33952 species Acetobacterium woodii 714 1 0 541000 1 family Ruminococcaceae 1675 11 15 3 620 3 0 1263 genus Ruminococcus 1 species Ruminococcus albus 0 1264 1 273 1 344 0 1160721 species Ruminococcus bicirculans no rank 0 552397 1 187 species [Clostridium] cellulosi 0 29343 187 1 genus 216851 0 276 1 1 276 853 0 Faecalibacterium prausnitzii species 130 1 0 2305133 no rank 0 1572656 species Ruminococcaceae bacterium CPB6 130 1 218 2 2 946234 0 1 Flavonifractor genus 1 216 292800 0 Flavonifractor plautii species 2 229 1 0 253238 genus Ethanoligenens 1 228 1 253239 0 Ethanoligenens harbinense species no rank 0 538999 1513 6 0 539000 family 250 2 2 250 1 73918 0 Thermaerobacter genus 1 249 1 73919 0 Thermaerobacter marianensis species 0 543314 family 2 771 399 1 [Eubacterium] sulci species 143393 0 genus 86331 0 372 1 1 372 114527 0 Mogibacterium diversum species 0 2717089 genus 253 1 2086584 0 Mordavella sp. Marseille-P3756 species 253 1 1 239 0 1392389 genus 1 239 species Intestinimonas butyriciproducens 0 1297617 68298 0 1 Syntrophomonadaceae family 586 4 6 2 159 4 0 129001 genus Syntrophothermus 1 1 155 0 86170 species Syntrophothermus lipocalidus genus 862 0 421 1 421 1 863 0 Syntrophomonas wolfei species 0 31979 family Clostridiaceae 1 40 93171 84 0 1485 genus Clostridium 1 30 86512 478 1 1926 1494 0 Clostridium cochlearium species 1 1603 0 1519 species Clostridium tyrobutyricum species Clostridium sporogenes 0 1509 1 2070 species Clostridium carboxidivorans 0 217159 2723 1 1 4073 Clostridium perfringens species 1502 0 species Clostridium acetobutylicum 0 1488 1979 1 2006 1 0 46867 species Clostridium chauvoei species Clostridium aceticum 0 84022 1 1331 238834 0 Clostridium estertheticum species 2061 1 1 2046 1493 0 Clostridium cellulovorans species 1548 0 Clostridium scatologenes species 1 2570 species Clostridium taeniosporum 0 394958 2206 1 Clostridium novyi species 1542 0 1742 1 1538 0 Clostridium ljungdahlii species 1 1734 1492 0 Clostridium butyricum species 3568 1 0 2614128 no rank 2 898 1 107 0 1042156 species Clostridium sp. SY8519 1 791 0 755731 species Clostridium sp. BNL1100 0 1561 species Clostridium baratii 1 3651 36745 0 Clostridium saccharoperbutylacetonicum species 1 3716 0 1534 species Clostridium kluyveri 1 2318 4411 1 species Clostridium pasteurianum 0 1501 Clostridium botulinum species 1491 0 1 18647 2585 1 0 1216932 species Clostridium bornimense species Clostridium autoethanogenum 0 84023 1657 1 1 3753 0 169679 species Clostridium saccharobutylicum 1 4585 Clostridium beijerinckii species 1520 0 29341 0 Clostridium argentinense species 1 2377 1254 1 species Clostridium formicaceticum 0 1497 Clostridium tetani species 1513 0 1 2544 4 3689 51 49082 0 Candidatus Arthromitus genus 1 2638829 0 no rank 3 3638 1216 1 Candidatus Arthromitus sp. SFB-mouse species 49118 0 1206 1 1041504 0 Candidatus Arthromitus sp. SFB-rat-Yit species 1508644 0 Candidatus Arthromitus sp. SFB-mouse-NL species 1216 1 genus Mordavella 0 1981033 2 1 1 genus Alkaliphilus 0 114627 10 1971 3 Alkaliphilus oremlandii species 461876 0 772 1 1189 1 species Alkaliphilus metalliredigens 0 208226 genus 0 390805 913 1 913 1 0 1424294 species Geosporobacter ferrireducens 216572 0 family 2 253 0 459786 1 genus Oscillibacter 253 2 2 251 1 351091 0 Oscillibacter valericigenes species 11 5097 2304686 0 family 2 762 25 0 1508657 genus Ruminiclostridium 1 737 1 1521 0 [Clostridium] cellulolyticum species 1 240 genus 0 1637257 species Mageeibacillus indolicus 0 884684 240 1 2304691 0 genus 1 336 species [Clostridium] stercorarium 0 1510 336 1 no rank 2305130 0 1 159 1834198 0 Ruminiclostridium sp. KB18 species 1 159 2304692 0 genus 3 2451 921 1 0 288965 species [Clostridium] clariflavum species Herbivorax saccincola 0 1677857 1 922 species Ruminiclostridium thermocellum 0 1515 608 1 507 1 0 2304693 genus 1 507 species [Clostridium] thermosuccinogenes 0 84032 0 236752 genus Fastidiosipila 1 2 642 3 1 639 Fastidiosipila sanguinis species 236753 0 990719 0 family 166 2 1 2 166 genus Christensenella 1 0 990721 1 165 Christensenella massiliensis species 1805714 0 31984 0 1 Heliobacteriaceae family 203 3 4 3 199 2 1 genus Heliobacterium 0 2697 1 196 35701 0 Heliobacterium modesticaldum species family Lachnospiraceae 1 0 186803 11 23 11286 698776 0 genus 1 2137 0 29360 species Cellulosilyticum lentocellum 1 2137 1 2 702 genus Anaerostipes 1 0 207244 1 701 Anaerostipes hadrus species 649756 0 genus 0 2039240 1 455 species Anaerotignum propionicum 0 28446 455 1 2 802 3 1 Blautia genus 572511 0 472 1 0 1322 species Blautia hansenii no rank 2648079 0 1 328 1 328 species Blautia sp. YL58 0 1796616 genus 28050 0 871 1 871 1 species [Eubacterium] eligens 0 39485 genus 2719231 0 1 369 [Clostridium] saccharolyticum species 84030 0 1 369 genus 0 1663717 692 1 species Herbinix luporum 0 1679721 1 692 2 588 no rank 0 186928 350 1 [Eubacterium] rectale species 39491 0 1 238 Lachnospiraceae bacterium oral taxon 500 species 712991 0 200 1 genus 0 841 200 1 Roseburia hominis species 301301 0 4 1546 13 0 1506553 genus Lachnoclostridium 1 Lachnoclostridium phocaeense species 1871021 0 1 202 species Lachnoclostridium phytofermentans 0 66219 1 996 1 335 2608895 0 no rank 0 1834196 species Lachnoclostridium sp. YL32 335 1 830 0 1 Butyrivibrio genus 1436 3 4 185008 0 Butyrivibrio hungatei species 663 1 Butyrivibrio proteoclasticus species 43305 0 769 1 2569097 0 genus 1 1177 1 1177 [Eubacterium] hallii species 39488 0 300 1 genus 0 2719313 300 1 208479 0 [Clostridium] bolteae species 0 543349 family Symbiobacteriaceae 1 3 321 4 Symbiobacterium genus 1 2733 0 1 2 317 0 2734 species Symbiobacterium thermophilum 316 1 140 2 0 33974 no rank 140 2 1 0 1930845 1 genus Ndongobacter 0 1871025 species Ndongobacter massiliensis 1 139 18 6872 18 1 class Tissierellia 0 1737404 1 Tissierellales order 1737405 0 37 6216 15 1 3 1613 Gottschalkiaceae family 1 2042895 0 1 Gottschalkia genus 1505664 0 2 1612 2 1 1610 Gottschalkia acidurici species 1556 0 family Peptoniphilaceae 1 0 1570339 12 11 4566 2 221 1 1161127 0 Murdochiella genus 1 species Murdochiella vaginalis 0 1852373 220 1 957 1 genus 0 150022 Finegoldia magna species 1260 0 1 957 1180 3 7 0 165779 1 genus Anaerococcus species Anaerococcus mediterraneensis 0 1870984 1 601 1 572 0 33034 species Anaerococcus prevotii 1 genus Parvimonas 0 543311 2 1493 2 species Parvimonas micra 0 33033 1491 1 13 703 2 1 Peptoniphilus genus 162289 0 690 1 2637196 0 no rank 1912856 0 Peptoniphilus sp. ING2-D1G species 1 690 638 2 0 1737407 no rank 638 2 4 0 1582879 1 genus Ezakiella 0 1852374 species Ezakiella massiliensis 634 1 17 6666 28 1 Negativicutes class 909932 0 14 4146 23 909929 0 Selenomonadales order 1 0 1843491 1 family Selenomonadaceae 1979 9 5 0 970 1 genus Selenomonas 1008 6 25 0 971 species Selenomonas ruminantium 230 1 1 227 0 69823 species Selenomonas sputigena no rank 2637378 0 526 3 1 205 Selenomonas sp. oral taxon 478 species 712538 0 1 147 0 1884263 species Selenomonas sp. oral taxon 920 174 1 0 713030 species Selenomonas sp. oral taxon 136 Megamonas genus 1 158846 0 3 2 966 Megamonas hypermegale species 158847 0 963 1 family Sporomusaceae 1 0 1843490 6 4 2144 2138 3 2 0 365348 1 genus Pelosinus 1099 1 no rank 0 2629460 1099 1 484770 0 Pelosinus sp. UFO1 species 1037 1 Pelosinus fermentans species 365349 0 1 Veillonellales order 1843489 0 4 2118 9 31977 0 1 Veillonellaceae family 2114 8 15 1 164 909928 0 genus 164 1 0 1702287 species Negativicoccus massiliensis genus Megasphaera 1 0 906 6 2 311 907 0 Megasphaera elsdenii species 1 305 10 1012 3 1 genus Veillonella 0 29465 1 738 Veillonella parvula species 29466 0 264 1 species Veillonella rodentium 0 248315 0 39948 genus 1 612 species Dialister pneumosintes 0 39950 612 1 4 385 order 1843488 0 5 385 4 1 family Acidaminococcaceae 0 909930 1 3 380 Acidaminococcus genus 1 904 0 170 1 0 187327 species Acidaminococcus intestini 1 209 0 905 species Acidaminococcus fermentans 1230 1 no rank 84086 0 1230 1 0 243899 species endosymbiont 'TC1' of Trimyema compressum class Erysipelotrichia 1 0 526524 5 10 1994 13 1989 9 1 order Erysipelotrichales 0 526525 8 1976 11 0 128827 family Erysipelotrichaceae 1 179 1 genus 1729679 0 179 1 species Faecalibaculum rodentium 0 1702221 genus Erysipelothrix 1 0 1647 8 3 907 1 418 1514105 0 Erysipelothrix larvae species 0 1648 species Erysipelothrix rhusiopathiae 481 1 no rank 544447 0 272 1 0 1834207 species Erysipelotrichaceae bacterium I46 272 1 2 607 1 191303 0 Turicibacter genus 1 606 1 no rank 0 2638206 species Turicibacter sp. H121 0 1712675 606 1 0 1676648 class Limnochordia 1 4 323 4 319 3 3 1676649 0 1 Limnochordales order 316 2 1676650 0 family 2 316 16 1676651 0 Limnochorda genus 1 1 300 species Limnochorda pilosa 0 1555112 230 430 251077 Bacilli class 1 91061 0 382 173901 264 1 order Bacillales 0 1385 1969 9 0 539002 no rank 7 1221 539742 0 no rank 1221 7 17 0 33986 1 genus Exiguobacterium 2644629 0 no rank 851 4 1 268 Exiguobacterium sp. U13-1 species 1849031 0 1 144 Exiguobacterium sp. AT1b species 360911 0 1 163 1399115 0 Exiguobacterium sp. MH3 species 0 1224749 species Exiguobacterium sp. ZWU0009 276 1 167 1 Exiguobacterium antarcticum species 132920 0 1 186 332410 0 Exiguobacterium sibiricum species 748 2 539738 0 no rank 1 genus Gemella 0 1378 4 748 2 744 1 2624949 0 no rank 0 1785995 species Gemella sp. oral taxon 928 744 1 0 186820 family Listeriaceae 1 9 6028 14 59 5253 6 1 genus Listeria 0 1637 1 641 0 1640 species Listeria seeligeri 1037 1 species Listeria ivanovii 0 1638 1 1970 1639 0 Listeria monocytogenes species Listeria welshimeri species 1643 0 740 1 0 1642 species Listeria innocua 806 1 0 2755 1 genus Brochothrix 761 2 2 759 1 Brochothrix thermosphacta species 2756 0 91305 118 144 186817 0 1 Bacillaceae family 1 genus Oceanobacillus 0 182709 5 1897 2 Oceanobacillus iheyensis species 182710 0 1 1892 2 1903 2675230 0 genus 657 1 0 665099 species Bacillus oceanisediminis 0 859143 species Bacillus kochii 1246 1 2 1881 0 2675229 genus 1 1472 Bacillus simplex species 1478 0 1 409 0 264697 species Bacillus muralis genus Bacillus 1 0 1386 1135 58 57825 27917 10 species group 0 86661 1 739 0 155322 species Bacillus toyonensis 1 3236 species Bacillus mycoides 0 1405 no rank 2750818 0 3 2305 1 926 species Bacillus sp. FDAARGOS_235 0 1839798 1 663 Bacillus sp. ABP14 species 1892404 0 2053832 0 Bacillus sp. HBCD-sjtu species 716 1 1428 0 Bacillus thuringiensis species 1 9507 species Bacillus cereus 0 1396 9380 1 species Bacillus anthracis 0 1392 1043 1 Bacillus cytotoxicus species 580165 0 1 861 species Bacillus bombysepticus 0 658666 846 1 0 561879 species Bacillus safensis 987 1 437 1 species Bacillus xiamenensis 0 1178537 185979 0 no rank 19 5546 98228 0 Bacillus sp. OxB-1 species 275 1 species Bacillus sp. Lzh-5 0 2049935 1 62 1837130 0 Bacillus sp. FJAT-14266 species 1 239 563169 0 Bacillus sp. SJ-10 species 1 111 species Bacillus sp. 275 0 1941347 1 99 1 92 0 1446792 species Bacillus sp. Pc3 1 112 1409 0 Bacillus sp. (in: Bacteria) species 1 1197 species Bacillus sp. 1NLA3E 0 666686 118 1 species Bacillus sp. YP1 0 1574141 1570330 0 Bacillus sp. BH072 species 1 59 1774743 0 Bacillus sp. SDLI1 species 186 1 2026248 0 Bacillus sp. 1s-1 species 215 1 93 1 species Bacillus sp. LM 4-2 0 1628753 756828 0 Bacillus sp. WP8 species 469 1 2009331 0 Bacillus sp. MD-5 species 197 1 799 1 species Bacillus sp. IHB B 7164 0 1827146 1 816 1565991 0 Bacillus sp. X1(2014) species 216 1 0 1856406 species Bacillus sp. H15-1 1 191 0 1127744 species Bacillus sp. JS 1 1249 Bacillus endophyticus species 135735 0 1 243 species Bacillus beveridgei 0 632773 Bacillus cohnii species 33932 0 1278 1 1 605 0 1398 species Bacillus coagulans 946 1 86664 0 Bacillus flexus species 0 412384 species Bacillus aryabhattai 1 874 Bacillus weihaiensis species 1547283 0 1055 1 1404 0 Bacillus megaterium species 1 2954 2068 1 Bacillus pumilus species 1408 0 species group 0 1792192 1 456 Bacillus altitudinis species 293387 0 1 456 1 576 species Bacillus horikoshii 0 79883 species Bacillus infantis 0 324767 1 293 1 123 79881 0 Bacillus gibsonii species 1 814 Bacillus methanolicus species 1471 0 species group 653685 0 6180 9 52 1 species Bacillus vallismortis 0 72361 1648923 0 Bacillus paralicheniformis species 1 371 species subgroup 1938374 0 3 1724 659243 0 Bacillus siamensis species 178 1 1390 0 Bacillus amyloliquefaciens species 1 785 Bacillus velezensis species 492670 0 1 761 Bacillus licheniformis species 1402 0 460 1 1 353 119858 0 Bacillus sonorensis species species Bacillus subtilis 0 1423 2556 1 Bacillus atrophaeus species 1452 0 1 664 1 461 Bacillus smithii species 1479 0 1 1053 Bacillus cellulosilyticus species 1413 0 575 1 Bacillus glycinifermentans species 1664069 0 genus 0 351195 243 1 0 1230341 species Salimicrobium jeotgali 243 1 0 1329200 genus Fictibacillus 1 3 1190 2 species Fictibacillus phosphorivorans 0 1221500 1 577 611 1 Fictibacillus arsenicus species 255247 0 129337 0 Geobacillus genus 1 15 4059 138 Geobacillus genomosp. 3 species 1921421 0 1 195 1 163 Geobacillus subterraneus species 129338 0 1505648 0 species group 4 1131 0 169283 species Geobacillus lituanicus 136 1 Geobacillus kaustophilus species 1462 0 199 1 33938 0 Geobacillus thermocatenulatus species 1 191 Geobacillus thermoleovorans species 33941 0 605 1 2642459 0 no rank 1752 6 0 544556 species Geobacillus sp. Y412MC61 1 107 0 1233873 species Geobacillus sp. GHH01 123 1 581103 0 Geobacillus sp. Y4.1MC1 species 1 442 1 668 471223 0 Geobacillus sp. WCH70 species 691437 0 Geobacillus sp. C56-T3 species 306 1 1 106 species Geobacillus sp. Y412MC52 0 550542 Geobacillus stearothermophilus species 1422 0 329 1 351 1 Geobacillus thermodenitrificans species 33940 0 40 6 3559 genus Anoxybacillus 1 0 150247 637 1 Anoxybacillus amylolyticus species 294699 0 Anoxybacillus gonensis species 198467 0 588 1 1295 2 no rank 2639704 0 610 1 species Anoxybacillus sp. B7M1 0 1490057 0 1490052 species Anoxybacillus sp. B2M1 1 685 species Anoxybacillus flavithermus 0 33934 1 999 genus Aeribacillus 1 0 1055323 2 2 688 686 1 Aeribacillus pallidus species 33936 0 2 376 1 175304 0 Lentibacillus genus 1 Lentibacillus amyloliquefaciens species 1472767 0 1 375 1906945 0 genus 1 535 1 535 Parageobacillus thermoglucosidasius species 1426 0 2675234 0 genus 3815 5 791 1 0 300825 species Bacillus lehensis 79885 0 Bacillus pseudofirmus species 768 1 0 86665 species Bacillus halodurans 1 417 Bacillus clausii species 79880 0 787 1 0 199441 species Bacillus krulwichiae 1 1052 768 1 29331 0 genus 0 1449 species Amphibacillus xylanus 768 1 Lysinibacillus genus 1 400634 0 60 5 5411 0 1421 species Lysinibacillus sphaericus 2531 1 907 1 0 28031 species Lysinibacillus fusiformis 1 1024 no rank 2636778 0 1024 1 species Lysinibacillus sp. YS11 0 2072025 species Lysinibacillus varians 0 1145276 1 889 31 5577 7 1 Virgibacillus genus 84406 0 1 953 0 163877 species Virgibacillus necropolis 2 1845 2620237 0 no rank 1 829 Virgibacillus sp. SK37 species 403957 0 Virgibacillus sp. 6R species 1911587 0 1016 1 1 852 1482 0 Virgibacillus halodenitrificans species 1098 1 Virgibacillus pantothenticus species 1473 0 0 2017483 species Virgibacillus phasianinus 798 1 9 3 1028 Halobacillus genus 1 45667 0 1570 0 Halobacillus halophilus species 487 1 0 402384 species Halobacillus mangrovi 532 1 459532 0 1 Terribacillus genus 406 2 2 586416 0 Terribacillus aidingensis species 404 1 0 186821 family 1 214 no rank 0 663587 214 1 0 85683 species [Bacillus] selenitireducens 1 214 4 189 3 1 Thermoactinomycetaceae family 186824 0 1 1 Laceyella genus 292635 0 0 1677050 genus 1 184 1 184 0 1471761 species Novibacillus thermophilus 186822 0 Paenibacillaceae family 1 46 23342 41 3 721 0 85151 no rank 3 721 2 0 55079 genus Aneurinibacillus 1 no rank 0 2642329 1 351 0 1450761 species Aneurinibacillus sp. XH2 351 1 1 368 Aneurinibacillus soli species 1500254 0 0 44249 genus Paenibacillus 1 36 20024 108 339 1 species group 0 2044880 1 339 483937 0 Paenibacillus riograndensis species 0 61624 species Paenibacillus mucilaginosus 736 1 1 650 1763538 0 Paenibacillus crassostreae species 13 6758 no rank 0 185978 species Paenibacillus sp. lzh-N1 0 2069255 398 1 0 1536774 species Paenibacillus sp. FSL H7-0357 1 398 1566358 0 Paenibacillus sp. IHBB 10380 species 1 1600 Paenibacillus sp. FSL R5-0345 species 1536770 0 846 1 1 328 0 1536772 species Paenibacillus sp. FSL R7-0273 337 1 Paenibacillus sp. FSL R7-0331 species 1536773 0 Paenibacillus sp. BIHB4019 species 1870819 0 450 1 395 1 0 1536771 species Paenibacillus sp. FSL R5-0912 675 1 species Paenibacillus sp. FSL P4-0081 0 1536769 0 1695218 species Paenibacillus sp. 32O-W 255 1 481743 0 Paenibacillus sp. Y412MC10 species 268 1 283 1 species Paenibacillus sp. JDR-2 0 324057 525 1 Paenibacillus sp. FSL H7-0737 species 1536775 0 Paenibacillus borealis species 160799 0 424 1 Paenibacillus peoriae species 59893 0 1 502 426 1 species Paenibacillus xylanexedens 0 528191 169760 0 Paenibacillus stellifer species 221 1 0 1616788 species Paenibacillus bovis 605 1 1 617 Paenibacillus graminis species 189425 0 1 830 0 44251 species Paenibacillus durus 339 1 Paenibacillus terrae species 159743 0 1 375 172713 0 Paenibacillus kribbensis species 345 1 0 1126833 species Paenibacillus beijingensis 683 1 0 1464 species Paenibacillus larvae 1 2823 1406 0 Paenibacillus polymyxa species species Paenibacillus sabinae 0 365617 1 167 Paenibacillus swuensis species 1178515 0 315 1 1 248 species Paenibacillus naphthalenovorans 0 162209 1407 1 species Paenibacillus donghaensis 0 414771 Paenibacillus odorifer species 189426 0 578 1 species Paenibacillus ihbetae 0 1870820 1 266 1462996 0 Paenibacillus yonginensis species 262 1 0 55080 genus Brevibacillus 1 4 2260 8 1 453 species Brevibacillus formosus 0 54913 610 1 1393 0 Brevibacillus brevis species species Brevibacillus laterosporus 0 1465 1 1189 76632 0 1 Thermobacillus genus 296 2 4 species Thermobacillus composti 0 377615 292 1 1 Alicyclobacillaceae family 186823 0 6 1476 8 1 296 2 1 genus Alicyclobacillus 0 29330 Alicyclobacillus acidocaldarius species 405212 0 1 295 652 2 genus 432330 0 Tumebacillus algifaecis species 1214604 0 176 1 1 476 species Tumebacillus avium 0 1903704 3 522 1 1129704 0 Kyrpidia genus 1 Kyrpidia tusciae species 33943 0 1 258 1 263 Kyrpidia sp. EA-1 species 2055160 0 186818 0 1 Planococcaceae family 12663 27 34 648800 0 1 Solibacillus genus 1745 3 29 0 2637870 no rank 919 1 species Solibacillus sp. R5-41 0 2048654 919 1 0 76853 species Solibacillus silvestris 797 1 1649 0 Kurthia genus 1 2 787 6 1 781 0 2644826 no rank 781 1 Kurthia sp. 11kri321 species 1750719 0 0 648802 genus Rummeliibacillus 1 2 644 3 1 641 Rummeliibacillus stabekisii species 241244 0 0 1569 1 genus Sporosarcina 2977 5 18 1 867 Sporosarcina psychrophila species 1476 0 2 589 0 2647733 no rank 1 300 Sporosarcina sp. P37 species 1930546 0 1930764 0 Sporosarcina sp. P33 species 1 289 1503 1 Sporosarcina ureae species 1571 0 620 2 3 157226 0 1 Jeotgalibacillus genus 1 617 species Jeotgalibacillus malaysiensis 0 1508404 12 5856 47 1372 0 Planococcus genus 1 1 557 Planococcus maritimus species 192421 0 Planococcus halocryophilus species 1215089 0 757 1 636 1 Planococcus faecalis species 1598147 0 0 1374 species Planococcus kocurii 636 1 species Planococcus rifietoensis 0 200991 1 248 1 453 0 161360 species Planococcus antarcticus 414778 0 Planococcus donghaensis species 631 1 0 1038856 species Planococcus plakortidis 156 1 758 1 species Planococcus sp. L10.15 0 1302659 977 2 2662419 0 no rank 2058136 0 Planococcus sp. MB-3u-03 species 1 248 Planococcus sp. PAMC 21323 species 1526927 0 729 1 42 36333 57 0 90964 family Staphylococcaceae 1 69965 0 Macrococcus genus 1 4 1806 10 0 69966 species Macrococcus caseolyticus 1 589 2619255 0 no rank 777 1 1898474 0 Macrococcus sp. IME1552 species 1 777 430 1 Macrococcus canis species 1855823 0 2 672 2 1 genus Auricoccucs 0 2005363 1 670 Auricoccus indicus species 1849491 0 1279 0 Staphylococcus genus 1 33 33595 278 1 676 46127 0 Staphylococcus felis species species Staphylococcus capitis 0 29388 990 1 1 1225 Staphylococcus haemolyticus species 1283 0 1 1513 0 246432 species Staphylococcus equorum 1284 0 Staphylococcus hyicus species 651 1 0 70255 species Staphylococcus condimenti 1 841 1281 0 Staphylococcus carnosus species 738 1 1 685 species Staphylococcus agnetis 0 985762 931 1 Staphylococcus saprophyticus species 29385 0 556 1 70258 0 Staphylococcus piscifermentans species 1 870 Staphylococcus succinus species 61015 0 1 374 1294 0 Staphylococcus muscae species species Staphylococcus pasteuri 0 45972 2324 1 1 346 Staphylococcus pettenkoferi species 170573 0 species Staphylococcus simiae 0 308354 1043 1 1 963 0 1292 species Staphylococcus warneri 1 556 Staphylococcus lutrae species 155085 0 0 1295 species Staphylococcus schleiferi 737 1 648 1 283734 0 Staphylococcus pseudintermedius species 1 940 0 91994 no rank species Staphylococcus sp. AntiMn-1 0 1715860 940 1 Staphylococcus nepalensis species 214473 0 993 1 1016 1 29382 0 Staphylococcus cohnii species 0 1286 species Staphylococcus simulans 641 1 1 1067 0 643214 species Staphylococcus stepanovicii 1 1052 species Staphylococcus hominis 0 1290 1 1124 species Staphylococcus sciuri 0 1296 0 28035 species Staphylococcus lugdunensis 1 927 856 1 Staphylococcus kloosii species 29384 0 species Staphylococcus argenteus 0 985002 1 1033 1 1802 1282 0 Staphylococcus epidermidis species species Staphylococcus aureus 0 1280 1 3493 species Staphylococcus xylosus 0 1288 1 1706 203 2 1 45669 0 1 Salinicoccus genus 202 1 Salinicoccus halodurans species 407035 0 184 165 76946 order Lactobacillales 1 0 186826 17 6044 9 0 81850 family Leuconostocaceae 1 3786 9 34 0 1243 1 genus Leuconostoc 1 583 species Leuconostoc carnosum 0 1252 0 33964 species Leuconostoc citreum 324 1 164 1 0 255248 species Leuconostoc garlicum 373 1 no rank 0 2685106 373 1 species Leuconostoc sp. C2 0 979982 0 1246 species Leuconostoc lactis 1 187 853 1 Leuconostoc gelidum species 1244 0 358 1 species Leuconostoc kimchii 0 136609 Leuconostoc mesenteroides species 1245 0 910 1 0 46254 genus 415 1 Oenococcus oeni species 1247 0 1 415 1834 6 15 46255 0 1 Weissella genus 1 308 0 759620 species Weissella ceti Weissella paramesenteroides species 1249 0 1 402 165096 0 Weissella koreensis species 1 354 1631871 0 Weissella jogaejeotgali species 464 1 Weissella cibaria species 137591 0 1 291 family Aerococcaceae 1 0 186827 5 8 2023 22 2018 7 1 Aerococcus genus 1375 0 0 87541 species Aerococcus christensenii 344 1 350 1 1376 0 Aerococcus urinae species 252 1 0 128944 species Aerococcus urinaehominis Aerococcus viridans species 1377 0 337 1 1 217 Aerococcus sanguinicola species 119206 0 0 51665 species Aerococcus urinaeequi 1 496 58 27804 42 0 33958 family Lactobacillaceae 1 0 2767889 genus 2 863 Lactobacillus backii species 375175 0 1 511 1 352 Lactobacillus coryniformis species 1610 0 1 Pediococcus genus 1253 0 11 2381 6 Pediococcus damnosus species 51663 0 1 505 467 1 Pediococcus claussenii species 187452 0 0 1670797 species group 287 1 1 287 1254 0 Pediococcus acidilactici species species Pediococcus inopinatus 0 114090 418 1 1255 0 Pediococcus pentosaceus species 1 693 4 2647 genus 0 2767887 1 1786 0 1624 species Lactobacillus salivarius species Lactobacillus acidipiscis 0 89059 1 396 266 1 species Lactobacillus agilis 0 1601 1 199 Lactobacillus ruminis species 1623 0 0 2767893 genus 781 3 Lactobacillus curieae species 1138822 0 1 317 0 152331 species Lactobacillus parabuchneri 237 1 1 227 0 1581 species Lactobacillus buchneri genus 0 2767842 1797 3 1589 0 Lactobacillus pentosus species 1 250 0 60520 species Lactobacillus paraplantarum 234 1 0 1590 species Lactobacillus plantarum 1313 1 0 2767879 genus 6 3372 1074467 0 Lactobacillus heilongjiangensis species 431 1 0 1007676 species Lactobacillus ginsenosidimutans 587 1 1 678 species Lactobacillus crustorum 0 392416 1 513 1612 0 Lactobacillus farciminis species 1847728 0 Lactobacillus allii species 1 611 1 552 Lactobacillus alimentarius species 1602 0 184 1 genus 0 2767876 1 184 Lactobacillus amylophilus species 1603 0 3 1689 2742598 0 genus 1 1175 species Lactobacillus reuteri 0 1598 species Lactobacillus fermentum 0 1613 247 1 1 267 0 97478 species Lactobacillus mucosae 2767881 0 genus 2 1172 species Lactobacillus lindneri 0 53444 1 685 1625 0 Lactobacillus sanfranciscensis species 1 487 926 2 0 2767885 genus Lactobacillus sakei species 1599 0 586 1 1 340 0 28038 species Lactobacillus curvatus 196 16 8827 Lactobacillus genus 1 1578 0 species Lactobacillus acetotolerans 0 1600 1 363 792 1 1584 0 Lactobacillus delbrueckii species 1 553 1579 0 Lactobacillus acidophilus species 893 1 1587 0 Lactobacillus helveticus species 1596 0 Lactobacillus gasseri species 1137 1 109790 0 Lactobacillus jensenii species 1 527 Lactobacillus johnsonii species 33959 0 1179 1 4 1455 0 2620435 no rank species Lactobacillus sp. CBA3606 0 2099789 1 229 1 354 species Lactobacillus sp. CBA3605 0 2099788 Lactobacillus sp. D1501 species 2108362 0 1 256 Lactobacillus sp. wkB8 species 1545702 0 616 1 Lactobacillus gallinarum species 52242 0 1 415 83683 0 Lactobacillus amylolyticus species 1 336 434 1 267818 0 Lactobacillus kefiranofaciens species species Lactobacillus amylovorus 0 1604 547 1 1 490 2767890 0 genus 1 490 0 1193095 species Lactobacillus hokkaidonensis genus 2759736 0 3 1411 1 477 species Lactobacillus rhamnosus 0 47715 1 412 0 1597 species Lactobacillus paracasei 1582 0 Lactobacillus casei species 1 522 2767877 0 genus 382 1 382 1 Lactobacillus kunkeei species 148814 0 genus 0 2767886 526 3 Lactobacillus koreensis species 637971 0 1 110 1580 0 Lactobacillus brevis species 1 328 0 267363 species Lactobacillus zymae 1 88 genus 2767892 0 1 314 314 1 species Lactobacillus paracollinoides 0 240427 1 Carnobacteriaceae family 186828 0 19 5457 11 3 1050 3 0 1470540 genus Jeotgalibaca 1 708126 0 Jeotgalibaca dankookensis species 1 527 no rank 2621505 0 520 1 1 520 species Jeotgalibaca sp. PTS2502 0 1903686 19 5 3318 Carnobacterium genus 1 2747 0 748 1 species Carnobacterium inhibens 0 147709 1 1294 species Carnobacterium maltaromaticum 0 2751 no rank 0 257487 1257 2 1 543 Carnobacterium sp. CP1 species 1564681 0 1 714 Carnobacterium sp. 17-4 species 208596 0 1070 2 1 191769 0 1 Marinilactibacillus genus 1 1069 0 2632303 no rank 1069 1 Marinilactibacillus sp. 15R species 1911586 0 16 20 10138 family Enterococcaceae 1 0 81852 2 1008 3 0 33969 genus Melissococcus 1 33970 0 Melissococcus plutonius species 1005 1 1 Tetragenococcus genus 51668 0 1 810 2 1 809 0 51669 species Tetragenococcus halophilus 3 1403 5 0 2737 genus Vagococcus 1 Vagococcus teuberi species 519472 0 1 729 1 669 0 633807 species Vagococcus penaei 1 Enterococcus genus 1350 0 78 6901 12 0 1352 species Enterococcus faecium 1 1170 0 1354 species Enterococcus hirae 721 1 Enterococcus casseliflavus species 37734 0 383 1 1 568 species Enterococcus mundtii 0 53346 species Enterococcus durans 0 53345 1 593 3 991 no rank 0 2608891 313 1 0 2060306 species Enterococcus sp. FDAARGOS_163 1 351 Enterococcus sp. FDAARGOS_375 species 2060307 0 327 1 2057791 0 Enterococcus sp. CR-Ec1 species Enterococcus wangshanyuanii species 2005703 0 612 1 685 1 Enterococcus thailandicus species 417368 0 1100 1 Enterococcus faecalis species 1351 0 24637 49 30 0 1300 1 family Streptococcaceae genus Streptococcus 1 0 1301 239 43 19710 Streptococcus pyogenes species 1314 0 999 1 0 1888195 species Streptococcus himalayensis 203 1 species group 119603 0 979 2 624 1 species Streptococcus equi 0 1336 355 1 Streptococcus dysgalactiae species 1334 0 1 892 Streptococcus salivarius species 1304 0 0 315405 species Streptococcus gallolyticus 715 1 Streptococcus oralis species 1303 0 1 553 species Streptococcus parasanguinis 0 1318 1 283 0 1326 species Streptococcus acidominimus 1 257 1 1037 Streptococcus agalactiae species 1311 0 1 640 species Streptococcus mitis 0 28037 0 1309 species Streptococcus mutans 688 1 Streptococcus halotolerans species 1814128 0 297 1 201 1 Streptococcus pseudopneumoniae species 257758 0 573 1 102684 0 Streptococcus infantarius species species Streptococcus iniae 0 1346 1 423 1307 0 Streptococcus suis species 1155 1 1 196 Streptococcus sanguinis species 1305 0 species group 671232 0 3 1770 0 1338 species Streptococcus intermedius 640 1 1 784 1328 0 Streptococcus anginosus species species Streptococcus constellatus 0 76860 346 1 Streptococcus equinus species 1335 0 291 1 400065 0 Streptococcus merionis species 301 1 0 1308 species Streptococcus thermophilus 1 583 1 324 species Streptococcus pasteurianus 0 197614 1 294 species Streptococcus pluranimalium 0 82348 species Streptococcus macedonicus 0 59310 1 310 493 1 species Streptococcus uberis 0 1349 1 295 Streptococcus marmotae species 1825069 0 1 604 0 1348 species Streptococcus parauberis 1 215 species Streptococcus cristatus 0 45634 711 1 0 1313 species Streptococcus pneumoniae 358 1 species Streptococcus lutetiensis 0 150055 0 2608887 no rank 7 1694 1 527 1319 0 Streptococcus sp. 'group B' species Streptococcus sp. FDAARGOS_192 species 1839799 0 1 290 172 1 Streptococcus sp. I-G2 species 1156431 0 174 1 species Streptococcus sp. I-P16 0 1156433 165 1 0 1902136 species Streptococcus sp. NPS 308 712633 0 Streptococcus sp. oral taxon 431 species 1 179 species Streptococcus sp. A12 0 1759399 187 1 Streptococcus gordonii species 1302 0 1 826 0 1811193 species Streptococcus pantholopis 1 311 Lactococcus genus 1 1357 0 7 5 4897 1366 0 Lactococcus raffinolactis species 1 273 1 603 1364 0 Lactococcus piscium species 1 3296 1358 0 Lactococcus lactis species species Lactococcus garvieae 0 1363 1 718 659 1 263855 0 no rank 1993866 0 Lactobacillales bacterium species 659 1 13 228273 638 1 Actinobacteria phylum 201174 0 Actinobacteria class 1 1760 0 761 586 218026 3945 7 29 85013 0 1 Frankiales order 1 Frankiaceae family 74712 0 13 3916 6 31 3903 5 1 genus Frankia 0 1854 736 1 298654 0 Frankia inefficax species Frankia alni species 1859 0 1582 1 805 1 0 2632575 no rank 0 298653 species Frankia sp. EAN1pec 805 1 1 749 0 106370 species Frankia casuarinae Actinomycetales order 1 2037 0 4 17 2757 family Actinomycetaceae 1 0 2049 43 16 2753 1884 9 53 1654 0 1 Actinomyces genus 0 1852377 species Actinomyces pacaensis 1 97 235 1 species Actinomyces oris 0 544580 no rank 0 2609248 3 834 species Actinomyces sp. Chiba101 0 1851395 1 245 species Actinomyces sp. oral taxon 897 0 2081702 1 270 species Actinomyces sp. oral taxon 414 0 712122 1 319 species Actinomyces sp. VUL4_3 0 1912795 1 90 208 1 1960083 0 Actinomyces gaoshouyii species 1 367 Actinomyces radicidentis species 111015 0 1653174 0 genus 106 1 106 1 59505 0 Actinotignum schaalii species 1 177 2 1 genus Arcanobacterium 0 28263 Arcanobacterium haemolyticum species 28264 0 1 176 genus 0 2529408 1 129 Actinomyces meyeri species 52773 0 129 1 2050 0 genus 223 1 0 2051 species Mobiluncus curtisii 223 1 191 1 0 1069494 genus 1661 0 Trueperella pyogenes species 191 1 20 7980 10 85008 0 Micromonosporales order 1 Micromonosporaceae family 1 28056 0 102 19 7970 genus Salinispora 1 0 168694 23 3 708 0 168695 species Salinispora tropica 1 317 0 168697 species Salinispora arenicola 368 1 1 3 genus Verrucosispora 0 84593 Plantactinospora genus 1 673534 0 26 4 2030 2004 3 2631981 0 no rank 0 2024580 species Plantactinospora sp. KBS50 666 1 0 2071627 species Plantactinospora sp. BB1 1 699 species Plantactinospora sp. BC1 0 2108470 639 1 1 genus Actinoplanes 0 1865 36 3339 6 551 1 species Actinoplanes friuliensis 0 196914 2078 3 2626549 0 no rank 697 1 Actinoplanes sp. SE50/110 species 134676 0 0 649831 species Actinoplanes sp. N902-109 684 1 697 1 2033844 0 Actinoplanes sp. SE50 species 1866 0 Actinoplanes missouriensis species 1 674 22 1788 4 1 genus Micromonospora 0 1873 species Micromonospora aurantiaca 0 47850 1 591 species Verrucosispora maris 0 1003110 548 1 no rank 0 2617518 1 627 627 1 648999 0 Micromonospora sp. L5 species 52018 0 no rank 1 464 1 464 0 1650658 species Actinobacteria bacterium IMCC26256 26 4555 16 1 Streptosporangiales order 85012 0 2004 0 1 Streptosporangiaceae family 2194 5 15 944 2 2 2000 0 1 Streptosporangium genus 0 2001 species Streptosporangium roseum 1 942 83681 0 Nonomuraea genus 1 2 1235 8 no rank 0 2593643 1 1227 1227 1 0 1909395 species Nonomuraea sp. ATCC 55076 2012 0 1 Thermomonosporaceae family 485 3 2 483 2 1 2019 0 1 Thermomonospora genus 1 482 Thermomonospora curvata species 2020 0 14 7 1850 family Nocardiopsaceae 1 0 83676 3 2 223 genus Thermobifida 1 0 83677 2021 0 Thermobifida fusca species 220 1 1613 4 16 0 2013 1 genus Nocardiopsis Nocardiopsis gilva species 280236 0 484 1 Nocardiopsis alba species 53437 0 1 382 731 1 0 2014 species Nocardiopsis dassonvillei no rank 1643818 0 327 1 1 327 147067 0 genus 327 1 Thermobispora bispora species 2006 0 15 4 2959 Catenulisporales order 1 414714 0 1 family Catenulisporaceae 0 414877 23 2944 3 0 414878 1 genus Catenulispora 2921 2 4 2917 1 304895 0 Catenulispora acidiphila species 1 Propionibacteriales order 85009 0 46 7138 33 13 3715 37 85015 0 Nocardioidaceae family 1 0 1839 1 genus Nocardioides 1605 4 17 species Nocardioides dokdonensis 0 450734 669 1 no rank 0 2615069 1 583 0 196162 species Nocardioides sp. JS614 1 583 0 2045452 species Nocardioides sp. 78 336 1 39 2 648 Kribbella genus 1 182639 0 609 1 182640 0 Kribbella flavida species 3 2 401 genus Aeromicrobium 1 0 2040 Aeromicrobium erythreum species 2041 0 1 398 genus Micropruina 1 0 116071 4 2 299 species Micropruina glycogenica 0 75385 1 295 2 725 12 0 2044 genus Pimelobacter 1 0 2045 species Pimelobacter simplex 713 1 19 3377 32 0 31957 family Propionibacteriaceae 1 2801844 0 genus 181 1 1 181 1750 0 Pseudopropionibacterium propionicum species 120 1 genus 0 203133 120 1 no rank 2633994 0 1 120 species Propionimicrobium sp. Marseille-P3275 0 1871034 1244 5 20 72763 0 1 Tessaracoccus genus 281 1 species Tessaracoccus flavus 0 1610493 1 268 species Tessaracoccus flavescens 0 399497 359 1 species Tessaracoccus aquimaris 0 1332264 no rank 0 2635419 316 1 316 1 species Tessaracoccus sp. T2.5-30 0 1909732 1912215 0 1 Acidipropionibacterium genus 377 2 1 0 1748 species Acidipropionibacterium acidipropionici 376 1 1 Cutibacterium genus 1912216 0 7 508 4 Cutibacterium acnes species 1747 0 188 1 species Cutibacterium avidum 0 33010 1 197 116 1 species Cutibacterium granulosum 0 33011 1 2 360 genus Microlunatus 1 0 29404 1 359 Microlunatus phosphovorus species 29405 0 555 3 1 0 1743 1 genus Propionibacterium 81 1 0 2608905 no rank 81 1 671223 0 Propionibacterium sp. oral taxon 193 species Propionibacterium freudenreichii species 1744 0 473 1 1 order Corynebacteriales 0 85007 220 49397 160 4 646 1 0 85029 family Dietziaceae 1 Dietzia genus 1 37914 0 7 3 645 2617939 0 no rank 1 409 0 712270 species Dietzia sp. oral taxon 368 409 1 1 229 Dietzia timorensis species 499555 0 697024 0 no rank 1 136 1 136 0 1847725 genus 136 1 1528099 0 Lawsonella clevelandensis species 4 856 3 85028 0 Tsukamurellaceae family 1 2060 0 Tsukamurella genus 1 3 853 4 species Tsukamurella paurometabola 0 2061 1 327 57704 0 Tsukamurella tyrosinosolvens species 1 522 1653 0 Corynebacteriaceae family 1 52 10587 26 10561 51 124 1716 0 1 Corynebacterium genus 1 164 0 1719 species Corynebacterium pseudotuberculosis 1 196 108486 0 Corynebacterium falsenii species 130 1 0 160386 species Corynebacterium casei 1 1228 1072256 0 Corynebacterium uterequi species 258224 0 Corynebacterium resistens species 144 1 species Corynebacterium mustelae 0 571915 158 1 1 112 0 1050174 species Corynebacterium epidermidicanis 156978 0 Corynebacterium imitans species 140 1 1 233 Corynebacterium marinum species 349751 0 1 156 species Corynebacterium callunae 0 1721 species Corynebacterium cystitidis 0 35757 190 1 Corynebacterium singulare species 161899 0 130 1 1 226 0 38289 species Corynebacterium jeikeium 312 1 0 1230998 species Corynebacterium frankenforstense Corynebacterium kroppenstedtii species 161879 0 78 1 Corynebacterium atypicum species 191610 0 1 110 1727 0 Corynebacterium variabile species 304 1 283 1 38305 0 Corynebacterium vitaeruminis species species Corynebacterium argentoratense 0 42817 190 1 Corynebacterium aurimucosum species 169292 0 135 1 251 1 species Corynebacterium maris 0 575200 1 176 Corynebacterium aquilae species 203263 0 28028 0 Corynebacterium flavescens species 135 1 1 183 65058 0 Corynebacterium ulcerans species 183 1 0 152794 species Corynebacterium efficiens 230 1 1717 0 Corynebacterium diphtheriae species 1 488 Corynebacterium glutamicum species 1718 0 1652495 0 Corynebacterium crudilactis species 207 1 173 1 43771 0 Corynebacterium urealyticum species species Corynebacterium simulans 0 146827 109 1 1 129 species Corynebacterium ureicelerivorans 0 401472 170 1 0 92706 species [Brevibacterium] flavum 246 1 225326 0 Corynebacterium halotolerans species 1 124 1231000 0 Corynebacterium lactis species Corynebacterium ammoniagenes species 1697 0 133 1 282 1 43770 0 Corynebacterium striatum species 1 129 Corynebacterium camporealensis species 161896 0 1 340 0 1223514 species Corynebacterium humireducens species Corynebacterium sphenisci 0 191493 256 1 181 1 Corynebacterium stationis species 1705 0 0 2624378 no rank 2 266 170 1 0 702967 species Corynebacterium sp. NML98-0116 1 96 1487956 0 Corynebacterium sp. ATCC 6931 species 182 1 1408191 0 Corynebacterium deserti species 187491 0 Corynebacterium glaucum species 1 165 1 163 Corynebacterium doosanense species 1121358 0 1 222 species Corynebacterium terpenotabidum 0 89154 0 136857 species Corynebacterium testudinoris 1 168 0 161895 species Corynebacterium phocae 129 1 1404244 0 Corynebacterium glyciniphilum species 190 1 35755 0 Corynebacterium kutscheri species 208 1 0 85026 1 family Gordoniaceae 2456 9 6 1 Gordonia genus 2053 0 30 2450 8 0 1136941 species Gordonia phthalatica 1 345 no rank 0 2657482 2 665 0 2059875 species Gordonia sp. YC-JH1 1 297 1 368 337191 0 Gordonia sp. KTR9 species 1 325 0 1004901 species Gordonia iterans species Gordonia polyisoprenivorans 0 84595 327 1 383 1 2054 0 Gordonia bronchialis species 1 375 2055 0 Gordonia terrae species 0 85025 1 family Nocardiaceae 13060 31 34 1 Rhodococcus genus 1827 0 238 9106 23 1 564 species Rhodococcus ruber 0 1830 474 1 43767 0 Rhodococcus hoagii species 1 511 species Rhodococcus erythropolis 0 1833 37919 0 Rhodococcus opacus species 1383 1 species Rhodococcus fascians 0 1828 1 331 132919 0 Rhodococcus jostii species 1 591 1 438 species Rhodococcus pyridinivorans 0 103816 no rank 192944 0 12 3495 1 224 Rhodococcus sp. YL-1 species 1045808 0 253 1 0 1727214 species Rhodococcus sp. H-CA8f 1805827 0 Rhodococcus sp. MTM3W5.2 species 473 1 192 1 Rhodococcus sp. WMMA185 species 679318 0 1 343 species Rhodococcus sp. PBTS 1 0 1653478 483 1 Rhodococcus sp. WB1 species 1033922 0 species Rhodococcus sp. B7740 0 1564114 298 1 1570939 0 Rhodococcus sp. 2G species 264 1 0 935199 species Rhodococcus sp. p52 1 319 species Rhodococcus sp. BH4 0 1807790 1 216 1 200 species Rhodococcus sp. PBTS 2 0 1653479 230 1 0 1723645 species Rhodococcus sp. 008 336 1 species Rhodococcus rhodochrous 0 1829 1 270 Rhodococcus qingshengii species 334542 0 Rhodococcus aetherivorans species 191292 0 475 1 1 genus Nocardia 0 1817 31 3920 7 1 452 0 37330 species Nocardia nova Nocardia farcinica species 37329 0 1 671 1 783 135487 0 Nocardia cyriacigeorgica species 1 435 species Nocardia seriolae 0 37332 species Nocardia terpenica 0 455432 1 501 1 1047 Nocardia brasiliensis species 37326 0 2 216 2 316606 0 Segniliparaceae family 1 286801 0 genus 214 1 1 214 Segniliparus rotundus species 286802 0 family Mycobacteriaceae 1 0 1762 37 56 21220 0 1073531 genus 2 702 348 1 Mycobacterium sinense species 875328 0 354 1 1788 0 Mycobacterium terrae species 13 5419 0 1866885 genus Mycobacterium thermoresistibile species 1797 0 293 1 1 447 Mycobacterium goodii species 134601 0 species Mycobacterium fortuitum 0 1766 275 1 0 110539 species Mycobacterium vanbaalenii 1 461 466 1 Mycobacterium phlei species 1771 0 Mycobacterium aurum species 1791 0 1 520 483 1 Mycobacterium smegmatis species 1772 0 295 1 1795 0 Mycobacterium neoaurum species 0 1810 species Mycobacterium vaccae 446 1 Mycobacterium gilvum species 1804 0 1 605 Mycobacterium litorale species 758802 0 1 295 0 36814 species Mycobacterium rhodesiae 1 324 1 509 Mycobacterium chubuense species 1800 0 227 1 0 697025 genus species Hoyosella subflava 0 639313 227 1 genus 0 670516 2692 5 1 207 Mycobacterium saopaulense species 1578165 0 species Mycobacterium stephanolepidis 0 1520670 193 1 36809 0 Mycobacterium abscessus species 1 1784 1 279 83262 0 Mycobacterium immunogenum species 1774 0 Mycobacterium chelonae species 1 229 1 genus Mycobacterium 0 1763 624 12143 34 species Mycobacterium ulcerans 0 1809 324 1 4406 13 no rank 2642494 0 449 1 species Mycobacterium sp. djl-10 0 1879023 1920667 0 Mycobacterium sp. WY10 species 1 294 369 1 189918 0 Mycobacterium sp. KMS species 295 1 species Mycobacterium sp. NRRL B-3805 0 1570328 species Mycobacterium sp. VKM Ac-1817D 0 1273687 274 1 species Mycobacterium sp. YC-RL4 0 1682113 343 1 1 204 0 1561223 species Mycobacterium sp. QIA-37 212767 0 Mycobacterium sp. JS623 species 590 1 1 365 1545728 0 Mycobacterium sp. EPa45 species 0 164756 species Mycobacterium sp. MCS 343 1 0 2051552 species Mycobacterium sp. PYR15 1 352 369 1 164757 0 Mycobacterium sp. JLS species 159 1 species Mycobacterium sp. MOTT36Y 0 1168287 species Mycobacterium marinum 0 1781 711 1 Mycobacterium liflandii species 261524 0 1 322 120793 0 species group 3212 8 species Mycobacterium avium 0 1764 1 1608 112 1 species Mycobacterium paraintracellulare 0 1138383 1 329 339268 0 Mycobacterium colombiense species 1 223 0 701042 species Mycobacterium marseillense 1767 0 Mycobacterium intracellulare species 1 4 940 213 Mycobacterium indicus pranii subspecies 35617 0 1 125 0 1203599 subspecies Mycobacterium yongonense 1 193 409 1 0 222805 subspecies Mycobacterium chimaera 1 477 Mycobacterium dioxanotrophicus species 482462 0 1 355 0 1768 species Mycobacterium kansasii species group 77643 0 1127 4 1 210 78331 0 Mycobacterium canettii species species Mycobacterium tuberculosis 1 0 1773 342 3 917 1 282 biotype Mycobacterium africanum 0 33894 biotype Mycobacterium bovis 0 1765 293 1 1 300 2249310 0 species group 1 300 722731 0 Mycobacterium shigaense species 1769 0 Mycobacterium leprae species 1 102 1 183 0 29311 species Mycobacterium haemophilum 17765 39 40 0 85010 1 order Pseudonocardiales 17725 38 139 2070 0 1 Pseudonocardiaceae family 571 2 2 1835 0 1 Saccharopolyspora genus 1 569 1836 0 Saccharopolyspora erythraea species 35 4188 7 1 genus Amycolatopsis 0 1813 208439 0 Amycolatopsis japonica species 1 575 31958 0 Amycolatopsis orientalis species 1 1119 33910 0 Amycolatopsis mediterranei species 1 736 0 1814 species Amycolatopsis methanolica 1 587 2618356 0 no rank 2 1136 0 1896961 species Amycolatopsis sp. AA4 1 607 529 1 Amycolatopsis sp. BJA-103 species 1911175 0 0 674734 genus Alloactinosynnema 1 2 579 1 1 578 2636053 0 no rank Alloactinosynnema sp. L-07 species 1653480 0 578 1 2 694 2 43356 0 Kutzneria genus 1 43357 0 Kutzneria albida species 692 1 64 8 4541 Pseudonocardia genus 1 1847 0 no rank 0 2619320 3750 6 0 1641402 species Pseudonocardia sp. HH130629-09 1 535 1690815 0 Pseudonocardia sp. HH130630-07 species 1 638 678 1 Pseudonocardia sp. AL041005-10 species 445576 0 species Pseudonocardia sp. EC080619-01 0 1096856 1 615 1 707 1688404 0 Pseudonocardia sp. EC080610-09 species species Pseudonocardia sp. EC080625-04 0 1096868 1 577 species Pseudonocardia dioxanivorans 0 240495 727 1 1 709 2029 0 genus 1 709 species Kibdelosporangium phytohabitans 0 860235 1 323 1851 0 genus 1852 0 Saccharomonospora viridis species 1 323 414 1 genus 142577 0 414 1 0 530584 species Prauserella marina 19 3 1520 genus Actinosynnema 1 0 40566 0 42197 species Actinosynnema pretiosum 692 1 1 809 Actinosynnema mirum species 40567 0 744 2 3 2071 0 1 Saccharothrix genus 741 1 Saccharothrix espanaensis species 103731 0 686 2 5 0 165301 1 genus Lentzea 681 1 0 1586287 species Lentzea guizhouensis 0 65496 genus Actinoalloteichus 1 6 2617 26 590 1 1470176 0 Actinoalloteichus hoggarensis species 1 658 1612552 0 Actinoalloteichus sp. ADI127-7 species 992 2 no rank 2644606 0 species Actinoalloteichus sp. AHMU CJ021 0 2072503 472 1 0 1612551 species Actinoalloteichus sp. GBA129-24 520 1 0 340345 species Actinoalloteichus hymeniacidonis 1 351 1643683 0 1 Acidothermales order 247 4 2 6 3 245 Acidothermaceae family 1 85032 0 239 2 4 0 28048 1 genus Acidothermus species Acidothermus cellulolyticus 0 28049 1 235 order Streptomycetales 1 0 85011 112 82 73293 family Streptomycetaceae 1 0 2062 188 81 73181 0 1883 genus Streptomyces 1 75 67986 1101 1 515 species Streptomyces cyaneogriseus 0 68192 1 623 species Streptomyces rubrolavendulae 0 285473 466 1 0 1950 species Streptomyces peucetius Streptomyces ambofaciens species 1889 0 1 743 1 767 1971 0 Streptomyces noursei species 0 1355015 species Streptomyces pluripotens 522 1 Streptomyces lividans species 1916 0 780 1 630 1 42684 0 Streptomyces collinus species 146923 0 Streptomyces parvulus species 604 1 1 622 Streptomyces puniciscabiei species 164348 0 594 1 Streptomyces clavuligerus species 1901 0 1 986 Streptomyces alfalfae species 1642299 0 796 1 0 67267 species Streptomyces alboflavus 1 687 species Streptomyces glaucescens 0 1907 1 971 0 1915 species Streptomyces lincolnensis 1828 1 species Streptomyces lydicus 0 47763 629295 0 species group 1235 2 1482558 0 species subgroup 1 622 0 1908 species Streptomyces globisporus 622 1 species subgroup 1482596 0 1 613 species Streptomyces griseus 0 1911 1 613 species Streptomyces autolyticus 0 75293 1 2176 1888 0 Streptomyces albus species 1895 1 1 602 Streptomyces chartreusis species 1969 0 1926 0 Streptomyces reticuli species 1 818 1 1627 0 54571 species Streptomyces venezuelae 0 1038928 species Streptomyces xinghaiensis 668 1 1477431 0 species group 2 3735 3077 1 Streptomyces coelicolor species 1902 0 species Streptomyces sampsonii 0 42239 1 658 1 4342 68570 0 Streptomyces albulus species Streptomyces griseochromogenes species 68214 0 1 677 1 653 species Streptomyces sp. S10(2016) 0 1783515 Streptomyces formicae species 1616117 0 1 1177 species Streptomyces niveus 0 193462 1 740 1 1558 Streptomyces pactum species 68249 0 24 18445 no rank 0 2593676 2094021 0 Streptomyces sp. WAC00288 species 1 638 species Streptomyces sp. CdTB01 0 1725411 807 1 1 1087 1849967 0 Streptomyces sp. SAT1 species 2135430 0 Streptomyces sp. P3 species 980 1 1 594 Streptomyces sp. CCM_MD2014 species 1561022 0 1 783 0 444103 species Streptomyces sp. CNQ-509 1837283 0 Streptomyces sp. S8 species 531 1 1265601 0 Streptomyces sp. PAMC 26508 species 1 495 species Streptomyces sp. Tue 6075 0 1661694 574 1 2059884 0 Streptomyces sp. CMB-StM0423 species 856 1 1751294 0 Streptomyces sp. 4F species 584 1 1 742 species Streptomyces sp. RTd22 0 1841249 0 1984801 species Streptomyces sp. CLI2509 746 1 0 234612 species Streptomyces sp. TN58 1 591 1147 1 0 1964449 species Streptomyces sp. 3211 862 1 species Streptomyces sp. Sge12 0 1972846 1 530 0 862751 species Streptomyces sp. SirexAA-E species Streptomyces sp. CFMR 7 0 1649184 1 635 Streptomyces sp. MOE7 species 1961713 0 1 625 Streptomyces sp. fd1-xmd species 1812480 0 735 1 1075 1 0 206662 species Streptomyces sp. FR-008 0 1262452 species Streptomyces sp. 769 867 1 species Streptomyces sp. M56 0 1495638 1 1183 778 1 Streptomyces sp. Mg1 species 465541 0 Streptomyces albireticuli species 1940 0 649 1 29303 0 Streptomyces cattleya species 1 566 Streptomyces fulvissimus species 68202 0 1 576 1914 0 Streptomyces lavendulae species 1 851 0 408015 species Streptomyces xiamenensis 496 1 1 608 1437453 0 Streptomyces leeuwenhoekii species 1 987 0 33903 species Streptomyces avermitilis 653 1 species Streptomyces violaceoruber 0 1935 362257 0 Streptomyces vietnamensis species 1 946 738 1 species Streptomyces violaceusniger 0 68280 1 480 0 1169025 species Streptomyces pratensis Streptomyces pristinaespiralis species 38300 0 610 1 Streptomyces scabiei species 1930 0 896 1 2049881 0 Streptomyces sp. XZHG99 species 1 607 0 1912 species Streptomyces hygroscopicus 1 1821 917 1 92644 0 Streptomyces malaysiensis species 0 379067 species Streptomyces bingchenggensis 1 1189 1 813 0 553510 species Streptomyces gilvosporeus 0 2063 genus Kitasatospora 1 5 5007 31 1 758 0 2633591 no rank 1 758 species Kitasatospora sp. MMS16-BH015 0 2018025 Kitasatospora albolonga species 68173 0 1 2220 730 1 1894 0 Kitasatospora aureofaciens species 1 1268 Kitasatospora setae species 2066 0 1643682 0 Geodermatophilales order 1 8 1644 2 1642 7 41 0 85030 1 family Geodermatophilaceae 0 38501 1 genus Blastococcus 525 2 5 1 520 0 138336 species Blastococcus saxobsidens 88138 0 Modestobacter genus 1 2 559 3 556 1 Modestobacter marinus species 477641 0 1 genus Geodermatophilus 0 1860 1 517 2 1 516 0 1861 species Geodermatophilus obscurus 0 622452 order Kineosporiales 1 4 603 3 family Kineosporiaceae 1 0 83778 1 3 600 6 599 2 1 Kineococcus genus 33981 0 Kineococcus radiotolerans species 131568 0 593 1 1 Candidatus Nanopelagicales order 2039638 0 24 5203 12 11 5179 2162846 0 family 2039639 0 Candidatus Nanopelagicus genus 1 4 2689 15 1 806 1884634 0 Candidatus Nanopelagicus limnes species 1066 1 species Candidatus Nanopelagicus abundans 0 1884916 species Candidatus Nanopelagicus hibericus 0 1884915 802 1 Candidatus Planktophila genus 1 622681 0 34 7 2490 Candidatus Planktophila dulcis species 1884914 0 463 1 439 1 species Candidatus Planktophila versatilis 0 1884905 0 1884907 species Candidatus Planktophila vernalis 1 439 0 573600 species Candidatus Planktophila limnetica 436 1 1 442 species Candidatus Planktophila lacus 0 1884913 237 1 Candidatus Planktophila sulfonica species 1884904 0 0 85006 order Micrococcales 1 140 33123 160 3 467 3 125316 0 Beutenbergiaceae family 1 464 2 5 0 84756 1 genus Beutenbergia 0 84757 species Beutenbergia cavernae 1 459 85019 0 1 Brevibacteriaceae family 512 3 9 Brevibacterium genus 1 1696 0 1 2 503 1703 0 Brevibacterium linens species 502 1 family Dermabacteraceae 1 0 85020 7 10 3122 257 2 23 472568 0 1 Devriesea genus 234 1 472569 0 Devriesea agamarum species 18 2699 6 1 Brachybacterium genus 43668 0 no rank 0 2623841 1 411 411 1 1903186 0 Brachybacterium sp. P6-10-X1 species 1 403 0 1331682 species Brachybacterium ginsengisoli species Brachybacterium sp. VR2415 0 2017485 1 354 1169 1 Brachybacterium sp. VM2412 species 2017484 0 Brachybacterium faecium species 43669 0 344 1 36739 0 genus 159 1 159 1 0 1630135 species Dermabacter vaginalis no rank 0 577468 1 177 177 1 genus 0 2038 0 2039 species Tropheryma whipplei 1 177 3 1725 6 1 family Cellulomonadaceae 0 85016 1 genus Cellulomonas 0 1707 18 1722 5 Cellulomonas flavigena species 1711 0 487 1 2620175 0 no rank 1 387 2003551 0 Cellulomonas sp. PSBB021 species 1 387 1 353 0 11 species Cellulomonas gilvus 477 1 Cellulomonas fimi species 1708 0 85023 0 Microbacteriaceae family 1 46 12984 86 1 115 1705353 0 genus species Aurantimicrobium minutum 0 708131 115 1 0 110932 genus Leifsonia 1 2 735 6 species Leifsonia xyli 0 1575 729 1 436 3 no rank 0 1655488 3 436 0 1655489 clade 6 436 3 1 genus Rhodoluna 0 529883 0 535712 species Candidatus Rhodoluna planktonica 1 208 222 1 0 529884 species Rhodoluna lacicola Curtobacterium genus 1 2034 0 12 4 1120 0 257496 no rank 2 710 1 378 0 1561023 species Curtobacterium sp. MR_MD2014 1905847 0 Curtobacterium sp. BH-2-1-1 species 332 1 398 1 species Curtobacterium pusillum 0 69373 7 671 3 1 Cryobacterium genus 69578 0 1 340 species Cryobacterium arcticum 0 670052 1 324 2649013 0 no rank 324 1 0 1978566 species Cryobacterium sp. LW097 471 2 2 33877 0 1 Agromyces genus 0 453304 species Agromyces aureus 1 469 1 genus Microterricola 0 518733 1 381 2 380 1 0 412690 species Microterricola viridarii 1 1289 2 1 Frondihabitans genus 447237 0 no rank 2626248 0 1 1288 species Frondihabitans sp. PAMC 28766 0 1795630 1288 1 1573 0 1 Clavibacter genus 1793 6 37 Clavibacter michiganensis species 1 28447 0 343 5 1756 subspecies Clavibacter nebraskensis 0 31963 307 1 33014 0 Clavibacter insidiosus subspecies 340 1 Clavibacter capsici subspecies 1874630 0 383 1 0 31964 subspecies Clavibacter sepedonicus 1 383 1759331 0 genus 387 1 1 387 0 1619308 species Cnuibacter physcomitrellae 0 337004 genus 1 269 0 279828 species Microcella alkaliphila 1 269 genus 0 33886 626 2 species Rathayibacter tritici 0 33888 324 1 302 1 0 145458 species Rathayibacter toxicus 1 2 126 Pontimonas genus 1 1434032 0 125 1 1159327 0 Pontimonas salivibrio species 4479 14 92 0 33882 1 genus Microbacterium 2687 8 no rank 2609290 0 1714373 0 Microbacterium sp. No. 7 species 565 1 290 1 1696072 0 Microbacterium sp. CGR1 species 322 1 1938334 0 Microbacterium sp. TPU 3598 species 1 397 species Microbacterium sp. BH-3-3-3 0 1906742 288 1 Microbacterium sp. PAMC 28756 species 1795053 0 Microbacterium sp. 1.5R species 1916917 0 1 267 Microbacterium sp. str. 'China' species 2103230 0 1 252 species Microbacterium sp. XT11 0 367477 1 306 0 84292 species Microbacterium chocolatum 267 1 300019 0 Microbacterium paludicola species 382 1 1 347 0 162426 species Microbacterium hominis 373 1 Microbacterium testaceum species 2033 0 36805 0 Microbacterium aurum species 1 331 1268 0 1 Micrococcaceae family 7861 37 73 Pseudarthrobacter genus 1 1742993 0 5 4 743 1 241 species Pseudarthrobacter sulfonivorans 0 121292 361575 0 Pseudarthrobacter phenanthrenivorans species 1 260 1 237 species Pseudarthrobacter chlorophenolicus 0 85085 1742992 0 genus 1 256 43663 0 Paenarthrobacter aurescens species 256 1 1 2 452 genus Sinomonas 1 0 596707 1 451 37927 0 Sinomonas atrocyanea species 193 1 genus 1868332 0 0 556325 species Neomicrococcus aestuarii 1 193 0 57493 1 genus Kocuria 778 4 2 Kocuria rhizophila species 72000 0 1 179 1 266 0 71999 species Kocuria palustris 1 331 446860 0 Kocuria flava species 1742989 0 1 Glutamicibacter genus 311 2 3 1 308 Glutamicibacter arilaitensis species 256701 0 139 1 1645 0 genus 1 139 species Renibacterium salmoninarum 0 1646 1269 0 1 Micrococcus genus 250 2 2 1270 0 Micrococcus luteus species 1 248 1 3 285 genus Rothia 1 0 32207 2047 0 Rothia dentocariosa species 117 1 Rothia mucilaginosa species 43675 0 167 1 162 1 genus 2078575 0 1 162 species Arthrobacter sp. IHBB 11108 0 1618207 15 4219 76 1663 0 Arthrobacter genus 1 species Arthrobacter crystallopoietes 0 37928 1 241 0 656366 species Arthrobacter alpinus 443 1 no rank 0 235627 12 3459 Arthrobacter sp. ATCC 21022 species 1771959 0 173 1 species Arthrobacter sp. U41 0 1849032 302 1 1 215 species Arthrobacter sp. YN 0 2020486 257 1 Arthrobacter sp. QXT-31 species 1357915 0 1118963 0 Arthrobacter sp. Rue61a species 189 1 403 1 species Arthrobacter sp. ERGS1:01 0 1704044 0 290399 species Arthrobacter sp. FB24 218 1 1494608 0 Arthrobacter sp. PAMC 25486 species 1 304 1 205 0 1652545 species Arthrobacter sp. YC-RL1 211 1 0 1690248 species Arthrobacter sp. LS16 2079227 0 Arthrobacter sp. PGP41 species 1 810 species Arthrobacter sp. ZXY-2 0 1806905 172 1 18 2645 9 1 family Promicromonosporaceae 0 85017 0 186188 genus Xylanimonas 1 2 487 2 186189 0 Xylanimonas cellulosilytica species 485 1 8 3 1191 Cellulosimicrobium genus 1 157920 0 species Cellulosimicrobium cellulans 0 1710 1 561 no rank 2624466 0 622 1 1 622 Cellulosimicrobium sp. TH-20 species 1980001 0 7 949 3 1 genus Isoptericola 0 254250 1 509 372663 0 Isoptericola dokdonensis species 1 433 139208 0 Isoptericola variabilis species family Dermatophilaceae 1 0 85018 1 3 213 1862 0 1 Dermatophilus genus 212 2 1 1863 0 Dermatophilus congolensis species 1 211 85022 0 Jonesiaceae family 1 2 119 1 0 43673 genus 1 118 1 118 species Jonesia denitrificans 0 43674 1 family Intrasporangiaceae 0 85021 13 1693 9 33 441 2 1 Janibacter genus 53457 0 species Janibacter indicus 0 857417 1 408 1 2 423 Arsenicicoccus genus 1 267408 0 no rank 0 2663846 1 422 0 1658671 species Arsenicicoccus sp. oral taxon 190 422 1 3 460 2 1 Serinicoccus genus 265976 0 species Serinicoccus sp. JLT9 0 1758689 457 1 3 2 356 Intrasporangium genus 1 53357 0 species Intrasporangium calvum 0 53358 353 1 0 145360 family Sanguibacteraceae 1 3 472 2 0 60919 genus Sanguibacter 1 2 470 4 1 466 Sanguibacter keddieii species 60920 0 family Dermacoccaceae 1 0 145357 12 7 973 265 2 1 57499 0 1 Kytococcus genus Kytococcus sedentarius species 1276 0 264 1 1 genus Dermacoccus 0 57495 1 332 2 Dermacoccus nishinomiyaensis species 1274 0 331 1 3 2 364 Luteipulveratus genus 1 745364 0 0 571913 species Luteipulveratus mongoliensis 1 361 276 4 3 622450 0 1 Actinopolysporales order 1 273 3 1 family Actinopolysporaceae 0 622451 0 1849 genus Actinopolyspora 1 2 272 2 0 414996 species Actinopolyspora erythraea 1 270 order 0 1643684 405 2 family 85031 0 405 2 4 2 405 genus Nakamurella 1 0 53460 1 401 Nakamurella multipartita species 53461 0 12 4677 27 1 Bifidobacteriales order 85004 0 26 4665 40 31953 0 Bifidobacteriaceae family 1 0 1678 1 genus Bifidobacterium 3732 19 50 0 1694 species Bifidobacterium pseudolongum 276 1 89 1 species Bifidobacterium thermophilum 0 33905 243 1 species Bifidobacterium scardovii 0 158787 1 243 species Bifidobacterium bifidum 0 1681 1 326 0 1685 species Bifidobacterium breve 113 1 species Bifidobacterium asteroides 0 1684 Bifidobacterium coryneforme species 1687 0 1 94 110 1 28026 0 Bifidobacterium pseudocatenulatum species Bifidobacterium indicum species 1691 0 1 97 species Bifidobacterium dentium 0 1689 1 162 0 35760 species Bifidobacterium choerinum 306 1 78 224 2 1 species Bifidobacterium catenulatum 0 1686 1 146 0 630129 subspecies Bifidobacterium kashiwanohense 160 1 1683 0 Bifidobacterium angulatum species species Bifidobacterium animalis 0 28025 1 227 148 1 0 1680 species Bifidobacterium adolescentis 317 1 638619 0 Bifidobacterium actinocoloniiforme species species Bifidobacterium longum 0 216816 1 547 1 Gardnerella genus 2701 0 1 637 2 Gardnerella vaginalis species 2702 0 1 636 154 2 4 0 196081 1 genus Scardovia 150 1 0 78259 species Scardovia inopinata 102 2 2 0 196082 1 genus Parascardovia 0 78258 species Parascardovia denticolens 1 100 85014 0 1 Glycomycetales order 507 4 4 1 family Glycomycetaceae 0 85034 18 503 3 1 Stackebrandtia genus 283810 0 4 485 2 1 481 0 283811 species Stackebrandtia nassauensis 0 1497346 class 4 3005 588673 0 Solirubrobacterales order 1 4 3005 8 0 320583 family Conexibacteraceae 1 3 2997 9 1 Conexibacter genus 191494 0 5 2988 2 Conexibacter woesei species 191495 0 1 2983 1 Coriobacteriia class 84998 0 27 3851 30 1 order Eggerthellales 0 1643822 24 2430 15 1 family Eggerthellaceae 0 1643826 32 2406 14 0 447020 genus 1 255 Adlercreutzia equolifaciens species 446660 0 255 1 14 3 689 genus Gordonibacter 1 0 644652 Gordonibacter urolithinfaciens species 1335613 0 321 1 species Gordonibacter massiliensis 0 1841863 1 354 1 150 0 84162 genus 1 150 0 84163 species Cryptobacterium curtum Denitrobacterium genus 1 79603 0 2 2 159 0 79604 species Denitrobacterium detoxificans 1 157 1 346 genus 1981050 0 1944646 0 Phoenicibacter massiliensis species 1 346 Eggerthella genus 1 84111 0 4 3 582 84112 0 Eggerthella lenta species 1 367 2648737 0 no rank 211 1 211 1 502558 0 Eggerthella sp. YY7918 species 2 193 1 84108 0 Slackia genus 1 192 1 84110 0 Slackia heliotrinireducens species 14 1394 21 84999 0 Coriobacteriales order 1 471 6 4 0 84107 1 family Coriobacteriaceae 113 2 7 0 33870 1 genus Coriobacterium Coriobacterium glomerans species 33871 0 106 1 205 1 0 84113 no rank Coriobacteriaceae bacterium 68-1-3 species 1531429 0 1 205 2 149 5 102106 0 Collinsella genus 1 species Collinsella aerofaciens 0 74426 1 144 0 1643824 family Atopobiaceae 1 7 902 4 0 2767353 genus 1 257 257 1 species Atopobium parvulum 0 1382 5 1 genus Atopobium 0 1380 4 636 9 0 133925 genus Olsenella 1 147 1 133926 0 Olsenella uli species 1 228 0 2638792 no rank species Olsenella sp. oral taxon 807 0 712411 228 1 0 1805478 species Olsenella sp. Marseille-P2300 252 1 84992 0 1 Acidimicrobiia class 1536 7 7 11 6 1529 Acidimicrobiales order 1 84993 0 family Acidimicrobiaceae 1 0 84994 5 3 439 1 genus Acidimicrobium 0 53634 21 434 2 0 53635 species Acidimicrobium ferrooxidans 413 1 1079 2 0 2448023 family 0 682522 genus Ilumatobacter 1 2 1079 12 1067 1 0 467094 species Ilumatobacter coccineus 1267 4 no rank 0 1752188 1 392 1848756 0 Actinobacteria bacterium IMCC26103 species 1 200 0 1848255 species Actinobacteria bacterium IMCC25003 1848755 0 Actinobacteria bacterium IMCC26077 species 215 1 species Actinobacteria bacterium IMCC19121 0 1848754 460 1 575 6 2 0 84995 1 class Rubrobacteria Rubrobacterales order 1 84996 0 9 5 573 0 84997 1 family Rubrobacteraceae 564 4 8 42255 0 Rubrobacter genus 1 3 556 11 1 242 species Rubrobacter radiotolerans 0 42256 49319 0 Rubrobacter xylanophilus species 303 1 102 58088 11 544448 0 Tenericutes phylum 1 2799557 0 no rank 1013 2 2 1013 3 0 1912503 genus Candidatus Izimaplasma 1 0 2624196 no rank 1010 1 species Candidatus Izimaplasma sp. HR1 0 1541959 1 1010 0 31969 1 class Mollicutes 55167 97 136 0 186328 order Entomoplasmatales 1 39 24126 49 14 7088 23 33925 0 Entomoplasmataceae family 1 1 genus Mesoplasma 0 46239 107 4964 8 1 598 2149 0 Mesoplasma entomophilum species 2151 0 Mesoplasma florum species 1 1208 1 707 Mesoplasma chauliocola species 216427 0 1 508 species Mesoplasma lactucae 0 138853 541 1 0 225999 species Mesoplasma syrphidae 0 324078 species Mesoplasma coleopterae 618 1 Mesoplasma tabanidae species 219745 0 677 1 1 genus Entomoplasma 0 46238 20 2101 5 0 215578 species Entomoplasma somnilux 626 1 266 1 74700 0 Entomoplasma freundtii species 1 508 0 214888 species Entomoplasma luminosum 1 681 81459 0 Entomoplasma melaleucae species 36 24 16989 Spiroplasmataceae family 1 2131 0 0 2132 genus Spiroplasma 1 23 16953 174 744 1 Spiroplasma citri species 2133 0 1138 2 no rank 2637901 0 1898044 0 Spiroplasma sp. TU-14 species 1 567 571 1 Spiroplasma sp. NBRC 100390 species 1914410 0 1166 1 Spiroplasma litorale species 216942 0 570 1 species Spiroplasma apis 0 2137 Spiroplasma clarkii species 2139 0 1 720 1 406 Spiroplasma atrichopogonis species 1114980 0 1041 1 Spiroplasma diminutum species 216936 0 species Spiroplasma mirum 0 2144 404 1 1 1086 Spiroplasma floricola species 216937 0 0 315358 species Spiroplasma eriocheiris 499 1 1 834 216938 0 Spiroplasma helicoides species 1 1099 species Spiroplasma taiwanense 0 2145 1 551 0 216945 species Spiroplasma syrphidicola 216933 0 Spiroplasma chrysopicola species 563 1 0 216934 species Spiroplasma corruscae 848 1 0 216946 species Spiroplasma turonicum 952 1 Spiroplasma culicicola species 216935 0 991 1 216944 0 Spiroplasma sabaudiense species 1 567 2136 0 Spiroplasma monobiae species 644 1 47834 0 Spiroplasma kunkelii species 1 763 0 362837 species Spiroplasma cantharicola 1 1193 13 5671 27 0 186329 order Acholeplasmatales 1 12 5644 20 0 2146 family Acholeplasmataceae 1 18 5 3104 genus Acholeplasma 1 0 2147 species Acholeplasma oculi 0 35623 819 1 61635 0 Acholeplasma brassicae species 488 1 1032 1 Acholeplasma palmae species 38986 0 747 1 Acholeplasma laidlawii species 2148 0 6 2520 23 33926 0 Candidatus Phytoplasma genus 1 565 1 species group 85630 0 species Candidatus Phytoplasma mali 0 37692 565 1 species group 0 85620 3 1474 202462 0 Maize bushy stunt phytoplasma species 481 1 229545 0 Aster yellows witches'-broom phytoplasma species 1 476 517 1 Onion yellows phytoplasma species 100379 0 species group 85632 0 458 1 458 1 Candidatus Phytoplasma australiense species 59748 0 order Mycoplasmatales 1 0 2085 104 44 25234 0 2092 1 family Mycoplasmataceae 25130 43 61 7437 12 genus 0 2767358 Mycoplasma californicum species 2113 0 1 352 species Mycoplasma canis 0 29555 1 749 Mycoplasma pulmonis species 2107 0 1 646 1 649 species Mycoplasma fermentans 0 2115 Mycoplasma pullorum species 48003 0 485 1 Mycoplasma agalactiae species 2110 0 1 691 Mycoplasma arginini species 2094 0 596 1 species Mycoplasma bovirhinis 0 29553 431 1 species Mycoplasma bovis 0 28903 1 1266 1 475 species Mycoplasma bovigenitalium 0 2112 631 1 171284 0 Mycoplasma cynos species Mycoplasma synoviae species 2109 0 466 1 1 1119 3 1 Ureaplasma genus 2129 0 Ureaplasma urealyticum species 2130 0 533 1 Ureaplasma parvum species 134821 0 585 1 193 16513 27 1 Mycoplasma genus 2093 0 1 384 86660 0 Mycoplasma dispar species 351 1 2128 0 Mycoplasma flocculare species species Mycoplasma suis 0 57372 1 287 581 1 Mycoplasma bovoculi species 45362 0 4142 3 656088 0 species group 0 2095 species Mycoplasma capricolum 1 1145 1 2038 Mycoplasma mycoides species 2102 0 0 2105 species Mycoplasma leachii 959 1 1 296 2111 0 Mycoplasma arthritidis species 0 2099 species Mycoplasma hyopneumoniae 1 898 849 1 species Mycoplasma yeatsii 0 51365 Mycoplasma haemocanis species 136241 0 1 412 572 1 Mycoplasma crocodyli species 50052 0 807 1 Mycoplasma putrefaciens species 2123 0 859 1 0 2118 species Mycoplasma mobile 92 1 species Mycoplasma pneumoniae 0 2104 1 944 species Mycoplasma hominis 0 2098 984991 0 Mycoplasma parvum species 397 1 Mycoplasma genitalium species 2097 0 1 285 0 2096 species Mycoplasma gallisepticum 506 1 173 1 65123 0 Mycoplasma wenyonii species 28227 0 Mycoplasma penetrans species 828 1 166 1 171632 0 Mycoplasma ovis species Mycoplasma haemofelis species 29501 0 1 762 Mycoplasma canadense species 29554 0 1 611 1 637 Mycoplasma hyorhinis species 2100 0 1 481 no rank 2683645 0 0 1749074 species Mycoplasma sp. (ex Biomphalaria glabrata) 1 481 2 1897 713063 0 no rank 0 1911683 species Tenericutes bacterium MZ-XQ 1 834 species Tenericutes bacterium MO-XQ 0 1911684 1063 1 230 2 0 1859062 no rank 0 262406 1 genus Thermobaculum 230 2 1 Thermobaculum terrenum species 166501 0 1 229 4583 41 200795 0 phylum class 0 189775 7 579 85000 0 subclass 415 4 0 85001 1 order Sphaerobacterales 415 4 5 3 410 suborder 255728 0 0 85002 family Sphaerobacteraceae 1 3 410 3 2 407 2 0 2056 genus Sphaerobacter 1 1 405 species Sphaerobacter thermophilus 0 2057 164 3 1 189776 0 1 Thermomicrobiales order 2 163 2 1 Thermomicrobiaceae family 189777 0 0 499 genus 1 161 0 500 species Thermomicrobium roseum 1 161 4 855 8 1 class Dehalococcoidia 0 301297 285 3 6 0 670486 1 genus Dehalogenimonas Dehalogenimonas lykanthroporepellens species 552810 0 136 1 Dehalogenimonas formicexedens species 1839801 0 143 1 566 4 2 1202465 0 1 Dehalococcoidales order family Dehalococcoidaceae 1 0 1202464 1 3 564 563 2 genus 61434 0 1 439 0 61435 species Dehalococcoides mccartyi 124 1 237581 0 no rank 1522671 0 Dehalococcoides sp. UCH007 species 1 124 32061 0 1 Chloroflexia class 1538 11 5 1533 10 17 32064 0 1 Chloroflexales order suborder 1508594 0 5 834 1 834 5 1 family Chloroflexaceae 0 1106 12 4 833 Chloroflexus genus 1 1107 0 Chloroflexus aggregans species 152260 0 375 1 223 2 446 Chloroflexus aurantiacus species 1 1108 0 Chloroflexus sp. Y-400-fl strain 480224 0 223 1 4 682 0 1508595 suborder 1 4 682 Roseiflexaceae family 1 1508635 0 120961 0 1 Roseiflexus genus 681 3 3 0 2609473 no rank 346 1 357808 0 Roseiflexus sp. RS-1 species 346 1 Roseiflexus castenholzii species 120962 0 1 332 292625 0 1 Anaerolineae class 605 5 6 4 599 0 292629 order 6 4 599 family Anaerolineaceae 1 0 292628 213 1 genus 233189 0 Anaerolinea thermophila species 167964 0 1 213 143 1 1324991 0 no rank 0 1889813 species Anaerolineaceae bacterium oral taxon 439 143 1 237 1 2019482 0 genus species Brevefilum fermentans 0 1986204 237 1 1 class Ardenticatenia 0 1382928 3 654 5 0 1382929 1 order Ardenticatenales 651 4 5 1 family Ardenticatenaceae 0 1382930 2 646 3 6 644 2 1 Candidatus Promineofilum genus 1988031 0 1806508 0 Candidatus Promineofilum breve species 1 638 0 475962 1 class Caldilineae 352 5 2 9 350 4 1 Caldilineales order 475963 0 3 341 3 1 Caldilineaceae family 475964 0 1 genus Caldilinea 0 233191 2 338 2 133453 0 Caldilinea aerophila species 1 336 clade 0 1798711 157 6231173 157 6231173 30 1117 0 Cyanobacteria phylum 1 82 32853 34 1 Nostocales order 1161 0 1 Rivulariaceae family 1185 0 21 2405 3 5 2 2384 genus Rivularia 1 0 373984 2676603 0 no rank 2379 1 2379 1 373994 0 Rivularia sp. PCC 7116 species 6 2147 3 1 family Hapalosiphonaceae 0 1892263 8 2141 2 1 Fischerella genus 1190 0 1 2133 0 494603 no rank 1 2133 species Fischerella sp. NIES-3754 0 1752063 no rank 0 1219117 1044 1 species Nostocales cyanobacterium HT-58-2 0 1940762 1044 1 family 0 2661849 8 9438 1186 0 1 Calothrix genus 9438 8 45 1236 1 Calothrix parietina species 32054 0 no rank 0 2619626 6 8157 Calothrix sp. NIES-4071 species 2005469 0 1 2188 1331 1 species Calothrix sp. NIES-2098 0 1954171 0 2005461 species Calothrix sp. NIES-4101 1526 1 2005462 0 Calothrix sp. NIES-3974 species 1113 1 1 1053 species Calothrix sp. 336/3 0 1337936 99598 0 Calothrix sp. PCC 7507 species 1 946 family Nostocaceae 1 0 1162 65 18 17737 112 11008 10 1 Nostoc genus 1177 0 7 8577 0 2593658 no rank 317936 0 Nostoc sp. PCC 7107 species 1 1451 1 1053 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 0 1261031 1 1333 Nostoc sp. NIES-3756 species 1751286 0 1 1478 species Nostoc sp. PCC 7524 0 28072 0 1869241 species Nostoc sp. CENA543 1 1184 0 103690 species Nostoc sp. PCC 7120 1 1074 1 1004 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 1618022 0 0 1306274 species Nostoc flagelliforme 1 1268 1051 1 species Nostoc punctiforme 0 272131 3 2211 12 0 264688 genus Trichormus 1 1 1162 Trichormus azollae species 1164 0 1 1037 0 264691 species Trichormus variabilis 4453 4 52 0 1163 1 genus Anabaena 0 2619674 no rank 2 2806 46234 0 Anabaena sp. 90 species 1 1380 Anabaena sp. WA102 species 1647413 0 1426 1 1 1595 0 1165 species Anabaena cylindrica order Synechococcales 1 0 1890424 181 58 6160317 22 5 6087449 Prochloraceae family 1 1213 0 Prochlorococcus genus 1 1218 0 226 4 6087427 1219 0 Prochlorococcus marinus species 4634933 1 1452268 2 2627481 0 no rank 1443669 1 Prochlorococcus sp. MIT 0604 species 1501268 0 1 8599 Prochlorococcus sp. MIT 0801 species 1501269 0 19 1968 6 1 family Leptolyngbyaceae 0 1890438 genus Leptolyngbya 1 0 47251 17 5 1949 2650499 0 no rank 1485 3 0 111781 species Leptolyngbya sp. PCC 7376 774 1 336 1 Leptolyngbya sp. O-77 species 1080068 0 species Leptolyngbya sp. NIES-3755 0 1752064 375 1 0 1184 species Leptolyngbya boryana 447 1 1 family Acaryochloridaceae 0 1890429 4 835 3 1 genus Acaryochloris 0 155977 12 831 2 0 155978 species Acaryochloris marina 1 819 1890436 0 1 Pseudanabaenaceae family 1256 3 8 1248 2 5 0 1152 1 genus Pseudanabaena 1 1243 0 2593292 no rank 1243 1 Pseudanabaena sp. PCC 7367 species 82654 0 1379 5 3 1890428 0 1 Merismopediaceae family 0 1142 1 genus Synechocystis 1376 4 35 no rank 2640012 0 3 1341 1 351 species Synechocystis sp. IPPAS B-1465 0 2116702 1147 0 Synechocystis sp. PCC 6714 species 639 1 1 351 1148 0 Synechocystis sp. PCC 6803 species family 0 2303730 2 662 170610 0 1 Halomicronema genus 662 2 5 657 1 0 1209493 species Halomicronema hongdechloris 66587 33 46 0 1890426 1 family Synechococcaceae genus 0 146785 1 300 species Thermosynechococcus elongatus 0 146786 1 300 genus Cyanobium 1 0 167375 60 3 2202 1 1218 59930 0 Cyanobium gracile species no rank 2627006 0 924 1 1851505 0 Cyanobium sp. NIES-981 species 924 1 26 63211 663 0 1129 genus Synechococcus 1 species Synechococcus lividus 0 33070 232 1 1 285 species Synechococcus elongatus 0 32046 23 62031 no rank 0 2626047 Synechococcus sp. PCC 73109 species 374982 0 286 1 1 270 species Synechococcus sp. PCC 7003 0 374981 32051 0 Synechococcus sp. WH 7803 species 690 1 280 1 species Synechococcus sp. PCC 7002 0 32049 17461 1 species Synechococcus sp. WH 8109 0 166314 species Synechococcus sp. SynAce01 0 1916956 742 1 292 1 Synechococcus sp. NIES-970 species 1827144 0 1 3643 29410 0 Synechococcus sp. WH 8103 species species Synechococcus sp. CC9605 0 110662 17833 1 species Synechococcus sp. PCC 8807 0 195248 1 233 Synechococcus sp. PCC 7117 species 195498 0 275 1 253 1 321332 0 Synechococcus sp. JA-2-3B'a(2-13) species 1 5968 Synechococcus sp. KORDI-100 species 1280380 0 316278 0 Synechococcus sp. RCC307 species 1 832 64471 0 Synechococcus sp. CC9311 species 1 582 Synechococcus sp. JA-3-3Ab species 321327 0 201 1 523 1 0 316279 species Synechococcus sp. CC9902 species Synechococcus sp. KORDI-52 0 585425 5414 1 species Synechococcus sp. PCC 7502 0 1173263 1 932 1 306 species Synechococcus sp. UTEX 2973 0 1350461 302 1 Synechococcus sp. PCC 6312 species 195253 0 84588 0 Synechococcus sp. WH 8102 species 1 3682 species Synechococcus sp. KORDI-49 0 585423 1031 1 828 2 2 0 13034 1 genus Dactylococcopsis 826 1 0 292566 species Dactylococcopsis salina 0 1890505 order Chroococcidiopsidales 1 4 1512 2 1890528 0 Chroococcidiopsidaceae family 1 3 1510 10 0 54298 1 genus Chroococcidiopsis 1500 2 3 Chroococcidiopsis thermalis species 54299 0 1 1497 29463 46 1301283 0 subclass Oscillatoriales order 1 1150 0 87 21 9266 1892249 0 Cyanothecaceae family 1 3 403 36 0 43988 genus Cyanothece 1 2 367 50 1 317 no rank 0 2649277 species Cyanothece sp. PCC 7425 0 395961 317 1 3 1115 2 0 1892255 family Gomontiellaceae 1 0 241421 1 genus Crinalium 1113 2 4 1 1109 0 241425 species Crinalium epipsammum 3789 6 30 0 1892254 1 family Oscillatoriaceae 1655 2 19 1155738 0 1 Moorea genus 1636 1 Moorea producens species 1155739 0 1 genus Oscillatoria 0 1158 15 2104 3 118323 0 Oscillatoria acuminata species 1185 1 482564 0 Oscillatoria nigro-viridis species 1 904 1892251 0 Coleofasciculaceae family 1 3 295 7 6 288 2 1 genus Geitlerinema 0 63132 1 282 0 2648775 no rank species Geitlerinema sp. PCC 7407 0 1173025 282 1 1 Microcoleaceae family 1892252 0 11 3577 5 1 2 3020 genus Trichodesmium 1 0 1205 3019 1 species Trichodesmium erythraeum 0 1206 1 Microcoleus genus 44471 0 12 546 2 no rank 2642155 0 534 1 1 534 Microcoleus sp. PCC 7113 species 1173027 0 46 25 20197 Chroococcales order 1 1118 0 1890450 0 1 Aphanothecaceae family 7436 10 18 2546365 0 genus 1436 2 2546366 0 species 1436 2 0 41431 strain Cyanothece sp. PCC 8801 1 719 1 717 Cyanothece sp. PCC 8802 strain 395962 0 2 1555 1 0 1453359 genus Candidatus Atelocyanobacterium 1 1 1554 0 713887 species Candidatus Atelocyanobacterium thalassa 763 2 no rank 92682 0 Halothece genus 1 76023 0 6 2 763 757 1 2632878 0 no rank 0 65093 species Halothece sp. PCC 7418 1 757 263510 0 genus 1092 1 1 1092 species 0 2546360 1 1092 43989 0 Cyanothece sp. ATCC 51142 strain 2 2572 genus 28070 0 1206 1 species 0 2546356 1206 1 0 65393 strain Cyanothece sp. PCC 7424 1 1366 2546359 0 species 497965 0 Cyanothece sp. PCC 7822 strain 1366 1 family Microcystaceae 1 0 1890449 23 4 2952 23 2929 3 1 genus Microcystis 0 1125 2109 1 species Microcystis aeruginosa 0 1126 2643300 0 no rank 797 1 1 797 Microcystis sp. MC19 species 1967666 0 1 Cyanobacteriaceae family 1890452 0 15 1664 3 genus Cyanobacterium 1 0 102234 3 2 1649 1 1646 species Cyanobacterium aponinum 0 379064 52 7 8099 family Chroococcaceae 1 0 1890464 935 1 102231 0 genus 935 1 0 2623012 no rank 1 935 Gloeocapsa sp. PCC 7428 species 1173026 0 2 3283 1 268175 0 Chondrocystis genus 1 0 2648896 no rank 3282 1 species Chondrocystis sp. NIES-4102 0 2005460 3282 1 22 3829 3 1 genus Geminocystis 0 669357 2 3807 no rank 2625037 0 0 1615909 species Geminocystis sp. NIES-3708 1 2155 1 1652 species Geminocystis sp. NIES-3709 0 1617448 class 307596 0 5 711 4 5 711 order Gloeobacterales 1 0 307595 6 707 4 1 Gloeobacteraceae family 1890422 0 3 701 6 0 33071 genus Gloeobacter 1 1 327 species Gloeobacter kilaueensis 0 1416614 1 368 Gloeobacter violaceus species 33072 0 0 1983111 no rank 1 981 cyanobacterium endosymbiont of Epithemia turgida species 718217 0 1 981 5306 8 15 0 52604 1 order Pleurocapsales 18 4539 4 1 Dermocarpellaceae family 1890498 0 1 genus Stanieria 0 102115 14 4521 3 2501 1 0 2642663 no rank 1 2501 0 1807358 species Stanieria sp. NIES-3757 0 102116 species Stanieria cyanosphaera 1 2006 1890500 0 1 Hyellaceae family 752 3 13 7 739 2 1 Pleurocapsa genus 44474 0 732 1 0 54308 species Pleurocapsa minor 0 1297 phylum 36 6734 0 188787 class Deinococci 1 36 6734 20 3 379 0 2762275 order 3 379 8 332247 0 Trueperaceae family 1 371 2 7 332248 0 1 Truepera genus 364 1 species Truepera radiovictrix 0 332249 50 3430 15 1 Deinococcales order 118964 0 3380 14 18 0 183710 1 family Deinococcaceae 3362 13 59 1298 0 1 Deinococcus genus 1 297 1309411 0 Deinococcus soli Cha et al. 2016 species 0 1299 species Deinococcus radiodurans 1 216 2623546 0 no rank 278 1 0 2080419 species Deinococcus sp. NW-56 1 278 55148 0 Deinococcus proteolyticus species 1 449 309887 0 Deinococcus maricopensis species 309 1 Deinococcus swuensis species 1182571 0 1 275 310783 0 Deinococcus deserti species 1 222 0 502394 species Deinococcus gobiensis 315 1 1 217 Deinococcus puniceus species 1182568 0 223 1 0 68909 species Deinococcus geothermalis 238 1 Deinococcus peraridilitoris species 432329 0 1 264 0 1768108 species Deinococcus actinosclerus 16 2905 17 1 order Thermales 0 68933 188786 0 1 Thermaceae family 2889 16 24 26 8 1788 genus Thermus 1 0 270 0 56956 species Thermus brockianus 1 166 Thermus oshimai species 56957 0 287 1 160 1 37636 0 Thermus scotoductus species species Thermus aquaticus 0 271 1 210 187 1 2619321 0 no rank 187 1 Thermus sp. CCB_US3_UF1 species 1111069 0 species Thermus parvatiensis 0 456163 1 200 1 552 species Thermus thermophilus 0 274 186191 0 1 Marinithermus genus 173 2 3 species Marinithermus hydrothermalis 0 186192 1 170 65551 0 1 Meiothermus genus 577 3 8 317 1 species Meiothermus ruber 0 277 1 252 species Meiothermus silvanus 0 52022 2 327 2 1 Oceanithermus genus 208447 0 325 1 187137 0 Oceanithermus profundus species 92 21174 clade 0 1783257 0 204428 phylum 21 5339 8 5339 21 1 Chlamydiia class 204429 0 1 order Chlamydiales 0 51291 9 3790 14 Chlamydiaceae family 1 809 0 4 13 3781 no rank 1113537 0 12 3777 12 3777 24 0 810 genus Chlamydia 1 83557 0 Chlamydia caviae species 1 310 1 451 85991 0 Chlamydia pecorum species 1457141 0 Chlamydia avium species 432 1 197 1 species Chlamydia suis 0 83559 species Chlamydia pneumoniae 0 83558 1 432 83560 0 Chlamydia muridarum species 228 1 1 332 Chlamydia felis species 83556 0 1 325 0 1457153 species Chlamydia gallinacea 0 813 species Chlamydia trachomatis 1 312 286 1 0 83555 species Chlamydia abortus 1 448 83554 0 Chlamydia psittaci species order Parachlamydiales 1 0 1963360 3 6 1541 92712 0 family 355 1 1 355 genus 34093 0 1 355 83561 0 Simkania negevensis species 1 3 900 family Parachlamydiaceae 1 0 92713 519 1 0 83551 genus 1 519 Parachlamydia acanthamoebae species 83552 0 1 380 genus 0 282132 0 389348 species Candidatus Protochlamydia naegleriophila 1 380 family 92714 0 283 1 1 283 genus 71666 0 species Waddlia chondrophila 0 71667 1 283 203682 0 Planctomycetes phylum 1 37 9367 2 2 1808 0 2517206 class 1127829 0 1 Candidatus Brocadiales order 1808 2 5 1 1803 family 1127830 0 genus 380738 0 1 1803 1803 1 174633 0 Candidatus Kuenenia stuttgartiensis species 666505 0 Phycisphaerae class 1 7 1383 3 1 order Phycisphaerales 0 666506 4 840 4 5 836 3 1 Phycisphaeraceae family 666507 0 1 Phycisphaera genus 666508 0 3 831 2 Phycisphaera mikurensis species 547188 0 828 1 2483366 0 order 540 2 2 540 family 2483367 0 0 2483368 genus 540 2 species Phycisphaerae bacterium L21-RPul-D3 0 1940790 269 1 1 271 0 1941349 species Phycisphaerae bacterium ST-PulAB-D4 27 6174 30 0 203683 class Planctomycetia 1 0 2691355 order 654 3 3 654 1 1914233 0 Gemmataceae family 1 17 653 2 1 genus Gemmata 0 113 2622970 0 no rank 1 636 0 1630693 species Gemmata sp. SH-PL17 636 1 order 2691354 0 6 1215 family 0 2691357 1021 4 265488 0 Rhodopirellula genus 1 2 502 3 Rhodopirellula baltica species 265606 0 499 1 0 123 genus Pirellula 1 2 519 3 125 0 Pirellula staleyi species 1 516 2 194 family 0 2691358 0 1676125 1 genus Thermogutta 194 2 1 1331910 0 Thermogutta terrifontis species 193 1 7 1597 2691356 0 order 10 7 1597 family Isosphaeraceae 1 0 1763524 0 1763521 genus Paludisphaera 1 2 593 2 1 591 species Paludisphaera borealis 0 1387353 genus Singulisphaera 1 0 466152 11 2 543 1 532 0 466153 species Singulisphaera acidiphila 1 genus Isosphaera 0 127 9 451 2 0 128 species Isosphaera pallida 1 442 83 2678 10 1 order Planctomycetales 0 112 0 126 family Planctomycetaceae 1 9 2595 26 2 426 5 1649490 0 Rubinisphaera genus 1 0 119 species Rubinisphaera brasiliensis 1 421 1 genus Fuerstia 0 1936111 1 518 2 517 1 1891926 0 Fuerstia marisgermanicae species genus 0 1649480 295 1 295 1 species Planctopirus limnophila 0 120 8 1330 3 1 Planctomyces genus 118 0 2648843 0 no rank 2 1322 682 1 1636152 0 Planctomyces sp. SH-PL62 species 640 1 Planctomyces sp. SH-PL14 species 1632864 0 5 478 134625 0 phylum 0 1921781 class Kiritimatiellae 1 5 478 4 474 4 1 1921782 0 1 Kiritimatiellales order 1921783 0 Kiritimatiellaceae family 1 3 473 6 0 1921784 genus Kiritimatiella 1 2 467 3 1307763 0 Kiritimatiella glycovorans species 1 464 5627 26 5 0 74201 1 phylum Verrucomicrobia 0 417295 no rank 2 927 509 1 Verrucomicrobia bacterium species 2026799 0 Verrucomicrobia bacterium IMCC26134 species 1637999 0 1 418 5 511 11 0 203494 class Verrucomicrobiae 1 order 48461 0 4 500 3 500 4 1 family Akkermansiaceae 0 1647988 3 497 11 239934 0 Akkermansia genus 1 263 1 0 239935 species Akkermansia muciniphila 223 1 Akkermansia glycaniphila species 1679444 0 5 928 3 1955630 0 Methylacidiphilae class 1 1 925 4 1 order Methylacidiphilales 0 717963 1 924 3 1 family Methylacidiphilaceae 0 717964 923 2 genus 0 511745 347 1 species Methylacidiphilum infernorum 0 511746 591154 0 Methylacidiphilum fumariolicum species 576 1 0 414999 1 class Opitutae 3074 11 26 10 1713 6 1 order Opitutales 0 415000 1703 5 9 134623 0 1 Opitutaceae family 625 1 278955 0 no rank 625 1 0 794903 species Opitutaceae bacterium TAV5 Lacunisphaera genus 1 1961799 0 4 2 521 Lacunisphaera limnophila species 1838286 0 1 517 1 548 genus 178440 0 0 107709 species Opitutus terrae 548 1 3 4 1335 order Puniceicoccales 1 0 415001 family Puniceicoccaceae 1 0 415002 4 3 1332 1 2 1328 genus Coraliomargarita 1 0 442430 Coraliomargarita akajimensis species 395922 0 1 1327 2 182 0 134549 class 134550 0 1 Candidatus Xiphinematobacter genus 182 2 8 174 1 no rank 0 2648876 174 1 0 1704307 species Candidatus Xiphinematobacter sp. Idaho Grape 3 363 phylum 256845 0 8 3 363 Lentisphaeria class 1 1313211 0 278082 0 Victivallales order 1 2 355 2 no rank 0 1674876 353 1 1 353 0 2094242 species Victivallales bacterium CCUG 44730 29875 59 0 203691 phylum 203692 0 Spirochaetia class 1 59 29875 58 1643688 0 order 9 4412 1 Leptospiraceae family 170 0 51 4412 9 2 247 1 0 338321 genus Turneriella 1 29510 0 Turneriella parva species 1 246 1 genus Leptospira 0 171 28 4114 6 Leptospira biflexa species 172 0 764 1 1 385 0 28183 species Leptospira santarosai 703 1 174 0 Leptospira borgpetersenii species 468 1 Leptospira alstonii species 28452 0 species Leptospira interrogans 0 173 1766 1 Brachyspirales order 1 1643686 0 12 7 7392 2 7380 6 1 Brachyspiraceae family 143786 0 Brachyspira genus 1 29521 0 41 5 7378 1749 1 84377 0 Brachyspira intermedia species species Brachyspira murdochii 0 84378 1626 1 species Brachyspira pilosicoli 0 52584 1 2208 species Brachyspira hyodysenteriae 0 159 1754 1 136 0 1 Spirochaetales order 18013 42 73 28 17 12366 family Borreliaceae 1 0 1643685 7065 8 194 138 0 1 Borrelia genus 1025 1 species Borrelia recurrentis 0 44449 species Borrelia miyamotoi 0 47466 1405 1 species Borrelia hermsii 0 140 1 689 1 689 Borrelia anserina species 143 0 0 141 species Borrelia parkeri 677 1 Borrelia turicatae species 142 0 678 1 1708 1 0 40834 species Borrelia duttonii Borreliella genus 1 64895 0 327 8 5273 1 646 Borreliella afzelii species 29518 0 1 530 species Borreliella bavariensis 0 664662 0 29519 species Borreliella garinii 1 1157 718 1 139 0 Borreliella burgdorferi species 509 1 62088 0 Borreliella valaisiana species 696 1 species Borreliella bissettii 0 64897 0 1674146 species Borrelia mayonii 1 690 0 137 family Spirochaetaceae 1 24 5574 32 0 157 genus Treponema 1 12 3273 25 147 1 Treponema azotonutricium species 150829 0 1 527 0 409322 species Treponema pedis species Treponema denticola 0 158 1 369 species Treponema succinifaciens 0 167 1 419 153 1 Treponema brennaborense species 81028 0 Treponema caldarium species 215591 0 342 1 88058 0 Treponema primitia species 1 396 Treponema putidum species 221027 0 1 406 1 216 0 2638727 no rank 1 216 species Treponema sp. OMZ 838 0 1539298 149 1 53435 0 Treponema paraluiscuniculi species 160 0 Treponema pallidum species 124 1 1911556 0 Sediminispirochaeta genus 1 2 335 2 333 1 species Sediminispirochaeta smaragdinae 0 55206 4 574 4 1 genus Sphaerochaeta 0 399320 1 178 Sphaerochaeta coccoides species 273376 0 Sphaerochaeta globosa species 1131703 0 1 177 1 215 0 1131707 species Sphaerochaeta pleomorpha 146 0 Spirochaeta genus 1 3 617 3 Spirochaeta thermophila species 154 0 313 1 0 46355 species Spirochaeta africana 301 1 1 genus Salinispira 0 1616789 3 743 2 0 1307761 species Salinispira pacifica 740 1 963 3 0 2323 no rank 963 3 0 1783234 clade 2 859 clade 95901 0 859 2 0 2497643 class 859 2 0 2497644 order 2497645 0 family 859 2 859 2 6 1551504 0 1 Candidatus Babela genus 1 853 species Candidatus Babela massiliensis 0 673862 104 1 95818 0 phylum 104 1 no rank 1895827 0 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 2056494 1 104 4762 10 0 200930 phylum 0 68337 class Deferribacteres 1 10 4762 11 9 4751 21 191393 0 Deferribacterales order 1 10 4730 8 1 family Deferribacteraceae 0 191394 genus Flexistipes 1 0 2351 2 2 1019 species Flexistipes sinusarabici 0 2352 1 1017 2 573 8 0 117999 genus Denitrovibrio 1 118000 0 Denitrovibrio acetiphilus species 1 565 0 545865 genus 883 1 Calditerrivibrio nitroreducens species 477976 0 1 883 2 2245 1 0 53572 genus Deferribacter 1 2244 1 Deferribacter desulfuricans species 197162 0 3110 19 0 57723 phylum class 1562566 0 380 2 5 2 380 genus Chloracidobacterium 1 0 458032 375 1 Chloracidobacterium thermophilum species 458033 0 12 17 2730 Acidobacteriia class 1 204432 0 1 order Acidobacteriales 0 204433 19 2225 12 26 2206 11 1 family Acidobacteriaceae 0 204434 1 genus Granulicella 0 940557 9 671 3 0 940615 species Granulicella tundricola 415 1 247 1 0 940614 species Granulicella mallensis 614 3 6 392733 0 1 Terriglobus genus 268 1 species Terriglobus roseus 0 392734 0 870903 species Terriglobus saanensis 1 340 2 537 5 0 33973 genus Acidobacterium 1 0 33075 species Acidobacterium capsulatum 1 532 0 658061 1 genus Candidatus Koribacter 358 2 9 349 1 Candidatus Koribacter versatilis species 658062 0 2 493 4 1 Solibacterales order 332160 0 332161 0 1 Solibacteraceae family 491 3 5 0 332162 genus Candidatus Solibacter 1 2 486 11 species Candidatus Solibacter usitatus 0 332163 475 1 74152 0 1 Elusimicrobia phylum 1970 9 5 641853 0 1 Elusimicrobia class 360 3 2 0 641854 order 358 2 family 0 641876 2 358 358 2 1 423604 0 1 Elusimicrobium genus 1 357 423605 0 Elusimicrobium minutum species 1 562 0 99260 no rank 0 167965 species uncultured Termite group 1 bacterium 1 562 1043 4 447830 0 class 1783344 0 Endomicrobiales order 1 4 1043 2 family 1783343 0 1041 3 3 1041 7 0 1408194 genus Endomicrobium 1 508 1 1408281 0 Endomicrobium proavitum species 0 1408204 species Candidatus Endomicrobium trichonymphae 526 1 41091 25 32066 0 phylum 1 class Fusobacteriia 0 203490 52 41091 25 41039 24 64 203491 0 1 Fusobacteriales order 203492 0 1 Fusobacteriaceae family 31651 11 36 genus Fusobacterium 1 0 848 119 9 30429 859 0 Fusobacterium necrophorum species 1 627 0 1583098 species Fusobacterium hwasookii 3409 1 species Fusobacterium periodonticum 0 860 5827 1 856 0 Fusobacterium varium species 3622 1 0 849 species Fusobacterium gonidiaformans 1 1067 Fusobacterium mortiferum species 850 0 1804 1 12074 1 Fusobacterium nucleatum species 851 0 861 0 Fusobacterium ulcerans species 1 1880 genus 0 167639 1186 1 167642 0 Ilyobacter polytropus species 1186 1 33 9324 12 1 family Leptotrichiaceae 0 1129771 1 genus Sneathia 0 168808 7 1189 2 1 1182 Sneathia amnii species 187101 0 3 1105 2 1 genus Sebaldella 0 32068 826 0 Sebaldella termitidis species 1102 1 1 2 1623 genus Streptobacillus 1 0 34104 0 34105 species Streptobacillus moniliformis 1622 1 5374 5 26 32067 0 1 Leptotrichia genus 3957 3 2633022 0 no rank 1 1420 species Leptotrichia sp. oral taxon 847 0 1785996 1397 1 Leptotrichia sp. oral taxon 498 species 712368 0 712357 0 Leptotrichia sp. oral taxon 212 species 1140 1 species Leptotrichia buccalis 0 40542 1 1391 0 0 1 name superkingdom 2157 0 304 58737 1 76 clade 1783276 0 76 1 phylum 0 1801631 genus 0 2490204 1 76 species Candidatus Micrarchaeota archaeon Mia14 0 1920749 1 76 0 28890 phylum Euryarchaeota 1 236 48685 1 985 10 class 0 183980 2231 0 1 Archaeoglobales order 985 10 2 0 2232 1 family Archaeoglobaceae 983 9 10 1 142 genus 54260 0 142 1 Ferroglobus placidus species 54261 0 10 585 5 1 genus Archaeoglobus 0 2233 118 1 Archaeoglobus fulgidus species 2234 0 1 166 0 1316941 species Archaeoglobus sulfaticallidus 157 1 0 58290 species Archaeoglobus veneficus Archaeoglobus profundus species 84156 0 134 1 genus 190818 0 246 2 142 1 565033 0 Geoglobus acetivorans species 0 113653 species Geoglobus ahangari 104 1 24 2939 2283796 0 clade clade 1803510 0 3 325 379546 0 Aciduliprofundum genus 1 3 325 5 203 1 species Aciduliprofundum boonei 0 379547 1 117 0 2633939 no rank 673860 0 Aciduliprofundum sp. MAR08-339 species 1 117 0 183967 1 class Thermoplasmata 2614 21 4 2 811 5 1 order Methanomassiliicoccales 0 1235850 1577788 0 Methanomassiliicoccaceae family 1 3 648 10 genus 1607807 0 1 202 1 202 0 1577791 species Candidatus Methanoplasma termitum 436 1 1080709 0 genus 436 1 Candidatus Methanomassiliicoccus intestinalis species 1406512 0 family 2517203 0 161 1 1 161 genus 0 1291539 1 161 Candidatus Methanomethylophilus alvus species 1291540 0 2301 0 Thermoplasmatales order 1 14 1630 8 2 252 46630 0 family 1 genus Picrophilus 0 46631 3 252 2 1 249 82076 0 Picrophilus torridus species 353 3 4 1747776 0 1 Cuniculiplasmataceae family genus Cuniculiplasma 1 0 1747777 9 2 349 Cuniculiplasma divulgatum species 1673428 0 1 340 157 1 no rank 1919231 0 157 1 1054217 0 Thermoplasmatales archaeon BRNA1 species 2 327 4 1 family Thermoplasmataceae 0 46659 Thermoplasma genus 1 2302 0 2 3 325 0 2303 species Thermoplasma acidophilum 1 125 species Thermoplasma volcanium 0 50339 1 198 family 90142 0 533 3 0 74968 genus Ferroplasma 1 3 533 8 250 1 Ferroplasma acidiphilum species 74969 0 1 275 0 97393 species Ferroplasma acidarmanus 1234666 0 no rank 169 1 1 169 methanogenic archaeon ISO4-H5 species 1495144 0 25654 116 clade 0 2290931 14 10224 51 1 Methanomicrobia class 224756 0 8438 28 10 0 94695 1 order Methanosarcinales 1 418 4 1 Methanosaetaceae family 143067 0 2222 0 Methanothrix genus 1 3 417 2 1 191 Methanosaeta harundinacea species 301375 0 1 224 2223 0 Methanothrix soehngenii species Methanosarcinaceae family 1 2206 0 5 23 8010 332 1 genus 196136 0 species Methanosalsum zhilinae 0 39669 1 332 5991 13 9 2207 0 1 Methanosarcina genus 1 344 2214 0 Methanosarcina acetivorans species 4 1424 no rank 2644672 0 Methanosarcina sp. WWM596 species 1434103 0 275 1 Methanosarcina sp. MTP4 species 1434100 0 479 1 233 1 species Methanosarcina sp. WH1 0 1434102 0 1434099 species Methanosarcina sp. Kolksee 1 437 703 1 species Methanosarcina mazei 0 2209 2208 0 Methanosarcina barkeri species 1456 1 445 1 species Methanosarcina vacuolata 0 2215 0 170861 species Methanosarcina lacustris 308 1 Methanosarcina horonobensis species 418008 0 332 1 635 1 0 38027 species Methanosarcina siciliae 1 335 Methanosarcina thermophila species 2210 0 Methanomethylovorans genus 1 101191 0 3 2 167 1 164 101192 0 Methanomethylovorans hollandica species 483 1 2321 0 genus 2322 0 Methanohalobium evestigatum species 483 1 2 404 genus 2175 0 2177 0 Methanohalophilus halophilus species 1 214 species Methanohalophilus mahii 0 2176 190 1 genus 0 2225 481 2 251 1 2226 0 Methanococcoides methylutens species 230 1 Methanococcoides burtonii species 29291 0 2220 0 genus 1 147 147 1 species Methanolobus psychrophilus 0 420950 2191 0 1 Methanomicrobiales order 1330 17 12 369 5 8 0 1198451 1 family Methanoregulaceae 475087 0 genus 1 136 Methanosphaerula palustris species 475088 0 1 136 3 3 225 Methanoregula genus 1 395331 0 Methanoregula boonei species 358766 0 1 128 94 1 Methanoregula formicica species 882104 0 196137 0 family 2 173 2 173 7 0 2202 genus Methanospirillum 1 166 1 0 2203 species Methanospirillum hungatei 88404 0 family 2 135 2 135 5 0 2192 genus Methanocorpusculum 1 1 130 83984 0 Methanocorpusculum labreanum species family Methanomicrobiaceae 1 0 2194 3 7 641 190 2 11 0 230355 1 genus Methanolacinia 1 179 species Methanolacinia petrolearia 0 54120 4 448 5 0 45989 genus Methanoculleus 1 157 1 species Methanoculleus bourgensis 0 83986 0 2198 species Methanoculleus marisnigri 1 176 no rank 0 2619537 1 110 1 110 0 86622 species Methanoculleus sp. MAB1 570264 0 1 Methanocellales order 442 5 2 4 440 2 0 570265 family Methanocellaceae 1 0 570266 genus Methanocella 1 3 438 4 Methanocella conradii species 1175444 0 1 134 0 1175445 species Methanocella arvoryzae 300 1 class Halobacteria 1 0 183963 47 65 15430 0 1644055 order Haloferacales 1 19 6277 51 7 8 1306 family Halorubraceae 1 0 1963271 0 1209988 genus Halopenitus 1 2 290 4 1048396 0 Halopenitus persicus species 286 1 2 2 464 Salinigranum genus 1 1644057 0 1 462 0 755307 species Salinigranum rubrum 4 545 3 1 Halorubrum genus 56688 0 Halorubrum lacusprofundi species 2247 0 208 1 29284 0 Halorubrum trapanicum species 333 1 15 9 4689 Haloferacaceae family 1 1644056 0 2 198 3 0 60846 genus Halogeometricum 1 0 60847 species Halogeometricum borinquense 1 195 1253 4 9 2251 0 1 Haloferax genus 212 1 0 2252 species Haloferax mediterranei 1 518 species Haloferax gibbonsii 0 35746 Haloferax volcanii species 2246 0 1 514 0 293431 1 genus Haloquadratum 3223 2 1 3222 1 0 293091 species Haloquadratum walsbyi 1 231 no rank 0 2678336 halophilic archaeon DL31 species 756883 0 231 1 51 6308 18 1 order Natrialbales 0 1644060 37 17 6257 family Natrialbaceae 1 0 1644061 genus 387342 0 1 389 1 389 species Halopiger xanaduensis 0 387343 161 2 1 353799 0 1 Halostagnicola genus 0 353800 species Halostagnicola larsenii 1 160 3005 2 1 63742 0 1 Natrialba genus 13769 0 Natrialba magadii species 3004 1 genus 0 1269201 256 1 256 1 0 2621923 no rank 1 256 species Salinarchaeum sp. Harcht-Bsk1 0 1333523 0 121871 genus 835 2 Haloterrigena turkmenica species 62320 0 1 341 1 494 species Haloterrigena daqingensis 0 588898 1 579 2 1 genus Halobiforma 0 203193 0 229731 species Halobiforma lacisalsi 578 1 3 467 1 88723 0 Natrinema genus 1 0 69525 species Natrinema pellirubrum 268 1 198 1 no rank 0 2622230 198 1 Natrinema sp. J7-2 species 406552 0 2 253 2 2256 0 Natronobacterium genus 1 1 251 species Natronobacterium gregoryi 0 44930 275 1 genus 0 29287 29288 0 Natronococcus occultus species 1 275 Halobacteriales order 1 2235 0 5 27 2798 15 1675 12 1963268 0 Haloarculaceae family 1 1073987 0 1 Halorientalis genus 205 2 2 203 1 no rank 0 2648975 0 1932360 species Halorientalis sp. IM1011 1 203 617 5 7 0 2237 1 genus Haloarcula 152 1 51589 0 Haloarcula hispanica species 154 1 0 2238 species Haloarcula marismortui 1 155 no rank 0 2624677 1 155 1592728 0 Haloarcula sp. CBA1115 species 1932004 0 Haloarcula taiwanensis species 1 149 1 genus Halomicrobium 0 203135 2 200 2 species Halomicrobium mukohataei 0 57705 198 1 349 3 4 63743 0 1 Natronomonas genus 0 2257 species Natronomonas pharaonis 157 1 188 1 416273 0 Natronomonas moolapensis species genus 0 146825 292 2 1 150 430914 0 Halorhabdus tiamatea species 142 1 146826 0 Halorhabdus utahensis species 11 1118 5 0 2236 family Halobacteriaceae 1 2 71 1 0 1980514 genus Halodesulfurarchaeum 1 0 1873524 species Halodesulfurarchaeum formicicum 70 1 776 4 10 0 2239 1 genus Halobacterium 226 1 Halobacterium salinarum species 2242 0 296 1 Halobacterium hubeiense species 1407499 0 1 244 0 2668073 no rank Halobacterium sp. DL1 species 751944 0 1 244 1 genus Halanaeroarchaeum 0 1656823 4 84 2 species Halanaeroarchaeum sulfurireducens 0 1604004 80 1 332246 0 1 Halalkalicoccus genus 182 2 3 Halalkalicoccus jeotgali species 413810 0 1 179 45 15156 2283794 0 clade 9 26 7442 class Methanobacteria 1 0 183925 4 7433 25 1 Methanobacteriales order 2158 0 6875 23 4 0 2159 1 family Methanobacteriaceae 2 795 1 2316 0 Methanosphaera genus 1 1 794 species Methanosphaera stadtmanae 0 2317 1 Methanothermobacter genus 145260 0 5 360 5 1 112 no rank 2631116 0 Methanothermobacter sp. CaT2 species 866790 0 1 112 species Methanothermobacter thermautotrophicus 0 145262 1 58 1 78 145261 0 Methanothermobacter wolfeii species 0 145263 species Methanothermobacter marburgensis 107 1 1 genus Methanobrevibacter 0 2172 6 3686 7 Methanobrevibacter millerae species 230361 0 698 1 1 796 0 294671 species Methanobrevibacter olleyae 2 993 2638681 0 no rank 574 1 Methanobrevibacter sp. AbM4 species 224719 0 1 419 1609968 0 Methanobrevibacter sp. YE315 species species Methanobrevibacter smithii 0 2173 1 761 1 432 Methanobrevibacter ruminantium species 83816 0 0 2160 genus Methanobacterium 1 8 2030 11 301 1 2162 0 Methanobacterium formicicum species 118062 0 Methanobacterium congolense species 1 281 205 1 species Methanobacterium subterraneum 0 59277 421 1 species Methanobacterium lacus 0 877455 2627676 0 no rank 402 2 212 1 species Methanobacterium sp. MB1 0 1379702 0 1911685 species Methanobacterium sp. MZ-A1 1 190 1 409 species Methanobacterium paludis 0 868131 1 554 0 2178 family 1 554 0 2179 genus 554 1 species Methanothermus fervidus 0 2180 0 183939 class Methanococci 1 19 7714 5 0 2182 order Methanococcales 1 18 7709 9 10 3432 6 0 196117 family Methanocaldococcaceae 1 21 2922 7 1 genus Methanocaldococcus 0 196118 species Methanocaldococcus fervens 0 83171 519 1 67760 0 Methanocaldococcus infernus species 357 1 2641196 0 no rank 463 1 Methanocaldococcus sp. FS406-22 species 644281 0 463 1 2190 0 Methanocaldococcus jannaschii species 1 463 1 599 species Methanocaldococcus bathoardescens 0 1301915 0 73913 species Methanocaldococcus vulcanius 1 500 6 504 2 1 genus Methanotorris 0 196119 0 2189 species Methanotorris igneus 1 498 6 7 4268 family Methanococcaceae 1 0 2183 genus Methanococcus 1 0 2184 2 5 3845 2187 0 Methanococcus vannielii species 1 487 799 1 Methanococcus voltae species 2188 0 556 1 0 42879 species Methanococcus aeolicus species Methanococcus maripaludis 0 39152 1 2001 genus 0 155862 1 417 417 1 species Methanothermococcus okinawensis 0 155863 2 3950 40 1 class Thermococci 0 183968 order 2258 0 39 3948 39 3948 2 0 2259 family Thermococcaceae 1 2263 0 1 Thermococcus genus 2996 29 28 no rank 2627626 0 6 356 species Thermococcus sp. EXT12c 0 2016361 1 43 Thermococcus sp. 5-4 species 2008440 0 1 46 1 28 Thermococcus sp. P6 species 122420 0 1674923 0 Thermococcus sp. 2319x1 species 111 1 246969 0 Thermococcus sp. AM4 species 55 1 0 1042877 species Thermococcus sp. 4557 73 1 1 47 0 342948 species Thermococcus onnurineus 0 71997 species Thermococcus gorgonarius 30 1 1 57 277988 0 Thermococcus thioreducens species 1 41 Thermococcus pacificus species 71998 0 Thermococcus litoralis species 2265 0 128 1 species Thermococcus peptonophilus 0 53952 1 39 1 47 0 54077 species Thermococcus barossii 73 1 49899 0 Thermococcus profundus species 72803 0 Thermococcus siculi species 1 1007 88 1 species Thermococcus chitonophagus 0 54262 206 1 582419 0 Thermococcus paralvinellae species 65 1 195522 0 Thermococcus nautili species 50 1 species Thermococcus radiotolerans 0 187880 species Thermococcus guaymasensis 0 110164 1 49 53 1 species Thermococcus gammatolerans 0 187878 172049 0 Thermococcus sibiricus species 1 169 1 36 Thermococcus cleftensis species 163003 0 1 56 0 1712654 species Thermococcus piezophilus 311400 0 Thermococcus kodakarensis species 55 1 0 2264 species Thermococcus celer 38 1 0 55802 species Thermococcus barophilus 1 229 Thermococcus eurythermalis species 1505907 0 1 49 genus 83867 0 143 1 Palaeococcus pacificus species 971279 0 143 1 0 2260 genus Pyrococcus 1 8 807 8 100 1 0 1609559 species Pyrococcus kukulkanii 1 162 Pyrococcus furiosus species 2261 0 1008460 0 Pyrococcus yayanosii species 44 1 78 1 species Pyrococcus abyssi 0 29292 292 2 no rank 0 2629106 187 1 species Pyrococcus sp. ST04 0 1183377 0 342949 species Pyrococcus sp. NA2 105 1 Pyrococcus horikoshii species 53953 0 123 1 9976 67 0 1783275 clade 4864 50 28889 0 phylum 0 183924 class Thermoprotei 1 50 4864 4 719 14 0 2266 order 5 223 family 114378 0 5 223 3 2268 0 Thermofilum genus 1 1 65 0 1483572 species Thermofilum carboxyditrophus Thermofilum pendens species 2269 0 46 1 0 1365176 species Thermofilum adornatus 1 56 Thermofilum uzonense species 1550241 0 53 1 1 496 9 1 family Thermoproteaceae 0 2267 2270 0 1 Thermoproteus genus 123 3 3 2271 0 Thermoproteus tenax species 67 1 53 1 Thermoproteus uzoniensis species 184117 0 genus 0 2276 1 50 1 50 0 2277 species Pyrobaculum islandicum 1 70 76886 0 genus 70 1 species Caldivirga maquilingensis 0 76887 3 3 252 genus Vulcanisaeta 1 0 164450 species Vulcanisaeta moutnovskia 0 985052 166 1 164451 0 Vulcanisaeta distributa species 83 1 0 2281 order Sulfolobales 1 12 2686 2 2684 11 6 0 118883 1 family Sulfolobaceae 2100760 0 genus 340 1 2287 0 Sulfolobus solfataricus species 1 340 41980 0 genus 2 212 1006005 0 Metallosphaera cuprina species 133 1 79 1 0 43687 species Metallosphaera sedula 509 1 genus 0 69655 509 1 species Sulfolobus tokodaii 0 111955 1 Sulfolobus genus 2284 0 5 1271 4 1 376 2641160 0 no rank 1 376 species Sulfolobus sp. A20 0 1891280 Sulfolobus acidocaldarius species 2285 0 258 1 Sulfolobus islandicus species 43080 0 632 1 1 346 2 1 genus Acidianus 0 12914 Acidianus hospitalis species 563177 0 1 345 3 4 534 Acidilobales order 1 871006 0 family 0 255472 504 2 2 504 4 200414 0 Caldisphaera genus 1 500 1 0 200415 species Caldisphaera lagunensis family 871007 0 1 27 27 1 genus 105850 0 1 27 242703 0 Acidilobus saccharovorans species 19 921 0 114380 order 6 206 5 1 family Pyrodictiaceae 0 2307 1 93 genus 0 54247 1 93 0 54248 species Hyperthermus butylicus 1 57 genus 54251 0 57 1 0 54252 species Pyrolobus fumarii 2 50 4 2308 0 Pyrodictium genus 1 1 46 1273541 0 Pyrodictium delaneyi species 1 family Desulfurococcaceae 0 2272 6 715 14 1 40 2 1 genus Thermosphaera 0 54253 39 1 0 54254 species Thermosphaera aggregans 2273 0 1 Desulfurococcus genus 100 3 3 species Desulfurococcus mucosus 0 2275 37 1 60 1 Desulfurococcus amylolyticus species 94694 0 54258 0 Ignicoccus genus 1 3 96 3 47 1 160233 0 Ignicoccus hospitalis species 0 54259 species Ignicoccus islandicus 1 46 3 420 6 2279 0 Staphylothermus genus 1 Staphylothermus hellenicus species 84599 0 144 1 species Staphylothermus marinus 0 2280 270 1 3 53 2 1 Thermogladius genus 477695 0 Thermogladius calderae species 1200300 0 50 1 5037 16 phylum 651137 0 class Nitrososphaeria 1 0 1643678 1 4 2153 1221 1 order 1968909 0 1968910 0 family 1221 1 1221 1 498374 0 genus 1221 1 species Candidatus Nitrosocaldus islandicus 0 2045011 0 1033996 1 order Nitrososphaerales 931 2 1 1 930 family 1033997 0 0 497726 genus 1 930 930 1 Nitrososphaera viennensis species 1034015 0 5 939 no rank 0 651142 2 595 5 0 1593364 genus Candidatus Nitrosopelagicus 1 species Candidatus Nitrosopelagicus brevis 0 1410606 1 590 1825023 0 Candidatus Nitrosotenuis genus 1 3 344 1 1603555 0 Candidatus Nitrosotenuis cloacae species 181 1 species Candidatus Nitrosotenuis sp. AQ6f 0 1846278 162 1 12 1945 7 1 order Nitrosopumilales 0 31932 1933 6 5 338190 0 1 Nitrosopumilaceae family 5 1103 3 1 genus Nitrosopumilus 0 338191 1 515 1229909 0 Candidatus Nitrosopumilus sediminis species Candidatus Nitrosopumilus adriaticus species 1580092 0 583 1 genus Candidatus Nitrosomarinus 1 0 1993653 3 2 825 1 822 species Candidatus Nitrosomarinus catalina 0 1898749 phylum 51967 0 1 75 genus 0 498845 1 75 498846 0 Candidatus Korarchaeum cryptofilum species 1 75