members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4719 39070 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 26378225 name 0 1 0 268 0 59415 superkingdom 2157 1 12 0 220 Euryarchaeota 53479 phylum 28890 110 0 29930 clade 2290931 1 54 0 64 183963 Halobacteria class 13613 0 1 37 18 3847 order Natrialbales 1644060 1644061 family 3810 Natrialbaceae 61 1 0 17 2256 215 genus 1 0 1 0 44930 215 Natronobacterium gregoryi species 0 1 314 genus 1269201 1 0 314 no rank 2621923 0 1 Salinarchaeum sp. Harcht-Bsk1 species 314 1333523 1 1 0 3 121871 646 genus Haloterrigena species Haloterrigena turkmenica 411 62320 0 1 Haloterrigena daqingensis species 234 588898 1 0 6 1 0 2 353799 Halostagnicola 279 genus 273 Halostagnicola larsenii species 353800 1 0 0 1 203193 543 genus 1 0 229731 species Halobiforma lacisalsi 543 Natrialba 270 genus 63742 2 1 2 0 1 0 13769 species 268 Natrialba magadii 727 Natrinema genus 88723 3 0 1 20 no rank 360 2622230 1 0 Natrinema sp. J7-2 species 360 406552 0 1 69525 species 347 Natrinema pellirubrum 0 1 2 0 1 2 403 Halopiger genus 387342 1 0 387343 Halopiger xanaduensis species 401 0 1 29287 352 genus 0 1 29288 352 species Natronococcus occultus 2235 order Halobacteriales 5904 28 0 1 50 0 156 1 16 1963268 Haloarculaceae family 4186 368 genus Natronomonas 63743 1 1 0 3 0 1 species Natronomonas pharaonis 207 2257 1 0 416273 Natronomonas moolapensis species 160 1073987 Halorientalis 406 genus 1 9 0 2 1 0 397 no rank 2648975 1932360 397 species Halorientalis sp. IM1011 0 1 2 8 1 0 Halomicrobium genus 404 203135 1 0 57705 species Halomicrobium mukohataei 396 0 1 52 5 2183 genus Haloarcula 2237 1 0 species 548 Haloarcula marismortui 2238 0 1 579 species Haloarcula hispanica 51589 0 1 1932004 species Haloarcula taiwanensis 306 1 0 2624677 698 no rank species Haloarcula sp. CBA1115 698 1592728 0 1 146825 Halorhabdus genus 669 0 1 1 3 0 1 146826 species 429 Halorhabdus utahensis 430914 Halorhabdus tiamatea species 239 0 1 2236 Halobacteriaceae family 1668 11 0 15 1 4 0 1 6 2239 Halobacterium genus 996 1 0 471 no rank 2668073 Halobacterium sp. DL1 species 471 751944 0 1 1 0 Halobacterium hubeiense species 297 1407499 2242 222 Halobacterium salinarum species 0 1 1656823 131 genus Halanaeroarchaeum 0 1 1 2 Halanaeroarchaeum sulfurireducens 130 species 1604004 0 1 1980514 Halodesulfurarchaeum 215 genus 2 0 1 1 214 species Halodesulfurarchaeum formicicum 1873524 1 0 genus Halalkalicoccus 311 332246 2 1 4 0 413810 307 Halalkalicoccus jeotgali species 0 1 1 42 0 17 order 3808 Haloferacales 1644055 1 3 0 8 family 1190 Halorubraceae 1963271 3 1 0 2 genus 269 Halopenitus 1209988 0 1 1048396 Halopenitus persicus species 266 10 1 0 3 56688 560 genus Halorubrum 1 0 2247 Halorubrum lacusprofundi species 254 29284 species Halorubrum trapanicum 296 1 0 1644057 358 genus Salinigranum 2 2 1 0 species 356 Salinigranum rubrum 755307 0 1 0 1 2678336 223 no rank 756883 223 halophilic archaeon DL31 species 1 0 1644056 2353 Haloferacaceae family 7 1 1 0 genus 1624 Haloferax 2251 4 0 17 1 2252 species 483 Haloferax mediterranei 0 1 species Haloferax volcanii 613 2246 1 0 1 0 species 511 Haloferax gibbonsii 35746 303 genus 293431 0 1 Haloquadratum walsbyi 303 species 293091 0 1 425 genus 60846 1 0 1 0 Halogeometricum borinquense 425 species 60847 46 39 1 0 class 16317 Methanomicrobia 224756 order Methanocellales 1021 570264 1 18 0 4 family 1003 570265 0 3 570266 genus 1003 Methanocella 3 0 3 1 1175444 158 species Methanocella conradii 0 1 842 species Methanocella arvoryzae 1175445 0 1 14 24 1 0 2191 Methanomicrobiales order 4020 2194 1367 family Methanomicrobiaceae 0 1 4 6 Methanoculleus 1155 genus 45989 4 0 1 12 Methanoculleus bourgensis species 466 83986 1 0 2198 Methanoculleus marisnigri species 375 0 1 1 0 2619537 302 no rank 0 1 Methanoculleus sp. MAB1 species 302 86622 230355 genus 208 1 0 1 0 54120 species 208 Methanolacinia petrolearia family 774 196137 1 0 0 1 genus 774 2202 species Methanospirillum hungatei 774 2203 0 1 1198451 Methanoregulaceae family 1366 5 0 1 2 0 4 1 3 903 genus Methanoregula 395331 0 1 358766 265 Methanoregula boonei species species 634 Methanoregula formicica 882104 0 1 475087 461 genus 0 1 475088 Methanosphaerula palustris species 461 0 1 family 489 88404 0 1 1 0 489 genus 2192 83984 Methanocorpusculum labreanum species 489 0 1 94695 Methanosarcinales 11237 order 27 1 31 0 2206 family 10482 Methanosarcinaceae 23 67 1 0 0 1 2321 genus 244 2322 species 244 Methanohalobium evestigatum 1 0 0 1 2220 genus 423 420950 Methanolobus psychrophilus species 423 1 0 2207 Methanosarcina genus 7912 1 35 0 13 0 1 270 species Methanosarcina lacustris 170861 0 1 2210 species Methanosarcina thermophila 372 0 4 2394 no rank 2644672 1434102 species Methanosarcina sp. WH1 650 1 0 0 1 1434099 Methanosarcina sp. Kolksee species 674 514 Methanosarcina sp. MTP4 species 1434100 1 0 0 1 1434103 556 Methanosarcina sp. WWM596 species 2215 498 species Methanosarcina vacuolata 1 0 0 1 species 1574 Methanosarcina barkeri 2208 0 1 2209 1104 Methanosarcina mazei species 0 1 2214 Methanosarcina acetivorans species 605 Methanosarcina horonobensis species 575 418008 0 1 species Methanosarcina siciliae 485 38027 0 1 0 1 1 3 Methanohalophilus genus 436 2175 0 1 222 Methanohalophilus mahii species 2176 0 1 2177 species Methanohalophilus halophilus 213 genus 636 101191 1 0 101192 Methanomethylovorans hollandica 636 species 1 0 303 genus 196136 0 1 0 1 Methanosalsum zhilinae species 303 39669 461 genus 2225 2 0 0 1 29291 species 238 Methanococcoides burtonii species 223 Methanococcoides methylutens 2226 1 0 1 4 0 3 143067 family 724 Methanosaetaceae 0 2 2222 720 genus 1 0 328 Methanothrix soehngenii species 2223 1 0 301375 392 species Methanosaeta harundinacea 2283794 10999 clade 43 0 Methanococci class 4329 183939 9 1 0 18 17 1 1 0 order Methanococcales 4320 2182 7 1 1 0 family Methanococcaceae 2990 2183 155862 genus 280 0 1 1 0 species Methanothermococcus okinawensis 280 155863 genus 2709 Methanococcus 2184 5 1 1 0 2188 351 Methanococcus voltae species 0 1 39152 Methanococcus maripaludis species 1745 0 1 2187 311 species Methanococcus vannielii 1 0 0 1 42879 species 301 Methanococcus aeolicus 9 0 196117 1329 family 5 1 0 2 196119 263 genus Methanotorris 1 0 258 species Methanotorris igneus 2189 7 1 1 0 196118 Methanocaldococcus 1066 genus species Methanocaldococcus infernus 109 67760 0 1 232 Methanocaldococcus vulcanius species 73913 1 0 0 1 1301915 species Methanocaldococcus bathoardescens 285 Methanocaldococcus jannaschii species 123 2190 1 0 0 1 83171 139 species Methanocaldococcus fervens 0 1 no rank 177 2641196 0 1 Methanocaldococcus sp. FS406-22 species 177 644281 25 0 4 1 183925 class 6670 Methanobacteria 24 0 1 1 Methanobacteriales 6666 order 2158 2178 family 433 0 1 1 0 genus 433 2179 Methanothermus fervidus species 433 2180 0 1 22 1 3 0 family Methanobacteriaceae 6232 2159 0 1 669 genus 2316 species 669 Methanosphaera stadtmanae 2317 1 0 5 2 1 0 145260 Methanothermobacter 563 genus 1 0 Methanothermobacter wolfeii species 133 145261 0 1 186 no rank 2631116 0 1 Methanothermobacter sp. CaT2 species 186 866790 145262 Methanothermobacter thermautotrophicus species 104 0 1 0 1 145263 138 species Methanothermobacter marburgensis 2160 Methanobacterium 2090 genus 2 1 0 8 59277 species 214 Methanobacterium subterraneum 0 1 0 1 species 361 Methanobacterium formicicum 2162 0 1 Methanobacterium lacus species 363 877455 1 0 Methanobacterium congolense species 273 118062 1 0 868131 356 Methanobacterium paludis species 2 0 2627676 521 no rank 1911685 species Methanobacterium sp. MZ-A1 259 1 0 1379702 species Methanobacterium sp. MB1 262 1 0 2172 Methanobrevibacter 2907 genus 0 17 1 7 0 2 2638681 no rank 851 0 1 species Methanobrevibacter sp. AbM4 507 224719 0 1 species 344 Methanobrevibacter sp. YE315 1609968 1 0 species 596 Methanobrevibacter smithii 2173 0 1 294671 Methanobrevibacter olleyae species 574 230361 species 478 Methanobrevibacter millerae 1 0 Methanobrevibacter ruminantium 391 species 83816 0 1 0 1 13 8 2205 Archaeoglobi class 183980 0 7 order 2192 2231 family 2192 2232 0 7 2233 1216 genus 0 4 1 0 58290 142 Archaeoglobus veneficus species 1316941 species Archaeoglobus sulfaticallidus 550 1 0 422 species Archaeoglobus fulgidus 2234 0 1 1 0 84156 species Archaeoglobus profundus 102 0 1 461 genus 54260 Ferroglobus placidus 461 species 54261 0 1 genus 515 190818 2 0 1 0 113653 species Geoglobus ahangari 153 565033 362 Geoglobus acetivorans species 1 0 0 1 26 40 183968 Thermococci class 6505 1 16 0 39 2258 Thermococcales 6479 order 38 0 23 1 2259 family Thermococcaceae 6463 29 52 1 0 2263 Thermococcus genus 5025 0 6 2627626 no rank 1088 246969 Thermococcus sp. AM4 298 species 0 1 0 1 2008440 217 Thermococcus sp. 5-4 species 2016361 147 Thermococcus sp. EXT12c species 1 0 81 species Thermococcus sp. P6 122420 1 0 0 1 1042877 species 218 Thermococcus sp. 4557 1674923 species Thermococcus sp. 2319x1 127 1 0 1 0 Thermococcus peptonophilus species 147 53952 0 1 Thermococcus eurythermalis species 85 1505907 1 0 Thermococcus radiotolerans species 290 187880 72803 species Thermococcus siculi 118 0 1 54077 Thermococcus barossii species 152 1 0 1 0 species Thermococcus kodakarensis 161 311400 277988 species Thermococcus thioreducens 296 1 0 1 0 166 Thermococcus nautili species 195522 55802 species 159 Thermococcus barophilus 0 1 species Thermococcus litoralis 225 2265 1 0 1 0 155 Thermococcus celer species 2264 71997 species 269 Thermococcus gorgonarius 1 0 species 169 Thermococcus paralvinellae 582419 0 1 1712654 species 144 Thermococcus piezophilus 1 0 1 0 187878 140 Thermococcus gammatolerans species 0 1 49899 species Thermococcus profundus 354 0 1 172049 species 274 Thermococcus sibiricus species Thermococcus cleftensis 115 163003 1 0 1 0 342948 Thermococcus onnurineus species 58 110164 Thermococcus guaymasensis species 145 1 0 1 0 species 169 Thermococcus chitonophagus 54262 71998 species Thermococcus pacificus 94 1 0 genus 82 83867 1 0 species Palaeococcus pacificus 82 971279 1 0 0 7 1333 genus 2260 1 0 Pyrococcus furiosus species 377 2261 2 0 2629106 520 no rank 1 0 Pyrococcus sp. NA2 species 342 342949 0 1 Pyrococcus sp. ST04 178 species 1183377 0 1 species Pyrococcus yayanosii 169 1008460 1 0 29292 126 Pyrococcus abyssi species 1 0 53953 60 species Pyrococcus horikoshii 1 0 81 species Pyrococcus kukulkanii 1609559 0 18 2283796 3828 clade 0 2 140 clade 1803510 0 2 379546 genus 140 0 1 no rank 40 2633939 673860 40 species Aciduliprofundum sp. MAR08-339 1 0 Aciduliprofundum boonei species 100 379547 1 0 1 13 0 16 183967 3688 Thermoplasmata class no rank 911 1234666 0 1 0 1 911 methanogenic archaeon ISO4-H5 species 1495144 Methanomassiliicoccales order 903 1235850 6 0 4 1 3 3 1 0 1577788 Methanomassiliicoccaceae 477 family genus 239 1607807 0 1 1 0 1577791 species Candidatus Methanoplasma termitum 239 0 1 1080709 genus 235 1 0 species 235 Candidatus Methanomassiliicoccus intestinalis 1406512 2 0 2517203 422 family 2 23 1 0 1291539 genus Candidatus Methanomethylophilus 422 Candidatus Methanomethylophilus alvus 399 species 1291540 0 1 0 1 14 8 2301 1861 order Thermoplasmatales 996 no rank 1919231 0 1 species Thermoplasmatales archaeon BRNA1 996 1054217 0 1 2 0 90142 family 258 genus 258 74968 2 0 0 1 88 species Ferroplasma acidiphilum 74969 0 1 species 170 Ferroplasma acidarmanus 97393 0 2 46659 294 family genus 294 2302 0 2 2303 126 Thermoplasma acidophilum species 1 0 168 Thermoplasma volcanium species 50339 1 0 1 0 188 family 46630 188 genus 46631 1 0 Picrophilus torridus species 188 82076 1 0 0 1 family 111 1747776 1747777 genus 111 1 0 1 0 Cuniculiplasma divulgatum species 111 1673428 0 47 1783275 5777 clade 31 phylum 51967 0 1 498845 31 genus 1 0 Candidatus Korarchaeum cryptofilum species 31 498846 1 0 3865 phylum 28889 0 36 183924 class Thermoprotei 3865 13 1 0 36 0 2 213 order 871006 1 0 871007 family 91 1 0 91 genus 105850 0 1 Acidilobus saccharovorans 91 species 242703 0 1 255472 family 122 122 genus 200414 1 0 122 species Caldisphaera lagunensis 200415 0 1 0 12 715 order 114380 3 0 219 family 2307 2308 119 genus 1 0 1 0 1273541 Pyrodictium delaneyi species 119 54247 genus 66 1 0 54248 66 species Hyperthermus butylicus 0 1 54251 34 genus 0 1 54252 34 Pyrolobus fumarii species 0 1 0 9 2272 family 496 3 0 1 1 2273 genus 74 Desulfurococcus 44 Desulfurococcus mucosus species 2275 0 1 1 0 94694 species Desulfurococcus amylolyticus 29 2 0 54258 genus 150 54259 species 29 Ignicoccus islandicus 0 1 160233 121 Ignicoccus hospitalis species 0 1 0 2 genus 130 2279 species Staphylothermus marinus 59 2280 0 1 71 Staphylothermus hellenicus species 84599 0 1 genus 69 54253 0 1 1 0 Thermosphaera aggregans 69 species 54254 477695 73 genus 0 1 0 1 1200300 species Thermogladius calderae 73 Sulfolobales order 1901 2281 10 1 1 0 9 1 1 0 1900 family Sulfolobaceae 118883 0 1 69655 473 genus species 473 Sulfolobus tokodaii 111955 1 0 2284 genus 717 3 0 species Sulfolobus islandicus 354 43080 1 0 251 species Sulfolobus acidocaldarius 2285 1 0 1 0 2641160 no rank 112 0 1 Sulfolobus sp. A20 112 species 1891280 2 0 90 genus 41980 1 0 43687 species Metallosphaera sedula 37 1 0 Metallosphaera cuprina species 53 1006005 521 genus 12914 1 0 1 0 563177 521 species Acidianus hospitalis 98 genus 2100760 0 1 2287 Sulfolobus solfataricus species 98 1 0 0 11 order 1023 2266 449 family 2267 0 7 126 genus 2270 0 2 1 0 100 species Thermoproteus uzoniensis 184117 1 0 Thermoproteus tenax species 26 2271 0 1 76886 53 genus 1 0 76887 species Caldivirga maquilingensis 53 2276 genus 52 1 0 2277 52 species Pyrobaculum islandicum 0 1 164450 genus Vulcanisaeta 218 3 0 1 1 0 1 985052 species Vulcanisaeta moutnovskia 108 1 0 species 109 Vulcanisaeta distributa 164451 0 4 114378 574 family 2268 genus 574 4 0 species 165 Thermofilum carboxyditrophus 1483572 0 1 1550241 species Thermofilum uzonense 183 1 0 0 1 2269 species Thermofilum pendens 64 1 0 1365176 Thermofilum adornatus species 162 651137 phylum 1881 10 0 3 0 order 919 31932 3 0 338190 family 919 1993653 320 genus 1 0 1898749 320 species Candidatus Nitrosomarinus catalina 0 1 599 genus 338191 0 2 0 1 1580092 Candidatus Nitrosopumilus adriaticus 345 species 1 0 254 species Candidatus Nitrosopumilus sediminis 1229909 1643678 class 289 4 0 0 1 1968909 96 order 1968910 96 family 0 1 498374 genus 96 1 0 1 0 2045011 Candidatus Nitrosocaldus islandicus species 96 order Nitrososphaerales 193 1033996 3 1 1 0 192 family Nitrososphaeraceae 1033997 2 0 3 1 1 0 genus 189 497726 Nitrososphaera viennensis species 189 1034015 0 1 no rank 673 651142 0 3 1825023 451 genus 2 0 1 0 species 151 Candidatus Nitrosotenuis sp. AQ6f 1846278 0 1 1603555 300 species Candidatus Nitrosotenuis cloacae genus 222 1593364 0 1 1410606 species Candidatus Nitrosopelagicus brevis 222 1 0 1 0 159 clade 1783276 phylum 159 1801631 0 1 1 0 genus 159 2490204 1 0 species Candidatus Micrarchaeota archaeon Mia14 159 1920749 2 26279740 Bacteria superkingdom 0 121 1 4419 0 9 1367 phylum 200940 67799 class 1367 Thermodesulfobacteria 9 0 9 1 188710 Thermodesulfobacteriales order 1358 8 0 1 6 0 1 8 7 family 1352 Thermodesulfobacteriaceae 188711 2 0 1 1 241192 genus 349 Thermodesulfatator 0 1 species Thermodesulfatator indicus 348 171695 398 genus 444090 1 0 1653476 Caldimicrobium thiodismutans species 398 0 1 0 1 2 3 Thermodesulfobacterium genus 597 1740 Thermodesulfobacterium geofontis species 415 1295609 0 1 Thermodesulfobacterium commune 180 species 1741 1 0 0 4 1575 phylum 1930617 1962850 class 1575 Calditrichae 1 4 0 4 3 1 2 0 Calditrichales order 1571 1962852 1962854 1569 family Calditrichaceae 2 0 1 1 187144 genus 1568 1 0 0 1 187145 species 1568 Caldithrix abyssi 9 0 4179 phylum 200930 9 0 1 31 68337 4179 class Deferribacteres 0 1 6 8 191393 4148 order Deferribacterales 0 36 1 7 4142 family Deferribacteraceae 191394 1800 Calditerrivibrio genus 545865 0 1 1 2 1799 Calditerrivibrio nitroreducens species 477976 1 0 genus 933 117999 0 1 1 0 118000 species Denitrovibrio acetiphilus 933 53572 Deferribacter genus 685 2 0 1 1 684 species Deferribacter desulfuricans 197162 0 1 2351 genus 688 1 0 688 species Flexistipes sinusarabici 2352 0 1 phylum 5139 508458 0 11 649775 Synergistia 5139 class 11 0 1 21 10 1 15 0 Synergistales order 5118 649776 282 1 0 9 649777 family Synergistaceae 5103 Acetomicrobium genus 243 49894 0 1 1 2 1 0 Acetomicrobium mobile species 242 97477 2 0 14 1 81461 Thermanaerovibrio genus 752 Thermanaerovibrio acidaminovorans species 738 81462 1 0 1 0 genus 394 336260 0 1 Thermovirga lienii species 394 336261 2 0 1 14 508459 genus 3002 Cloacibacillus 0 1 2988 species Cloacibacillus porcorum 1197717 0 1 genus 430 81466 81468 Aminobacterium colombiense species 430 1 0 42 0 15153 phylum 200918 188708 Thermotogae 15153 class 42 17 1 0 6 0 4 1 Kosmotogales 1275 order 1643946 8 1 0 5 family 1271 Kosmotogaceae 1643948 0 2 651456 genus 904 1330330 species Kosmotoga pacifica 441 0 1 651457 Kosmotoga olearia species 463 0 1 2 13 1 0 Mesotoga 359 genus 1184396 0 1 1184387 Mesotoga prima species 346 order 3201 Petrotogales 1643947 8 0 1 12 family 3189 1643949 7 0 Defluviitoga 672 genus 1511648 2 2 1 0 0 1 1006576 Defluviitoga tunisiensis 670 species 0 14 1 2 Petrotoga genus 549 28236 species Petrotoga mobilis 535 69499 0 1 1 21 0 3 Marinitoga 1968 genus 160798 0 1 no rank 990 2640159 0 1 1545835 990 Marinitoga sp. 1137 species 1 0 species 957 Marinitoga piezophila 149715 2419 10660 Thermotogales order 0 1 5 27 family Thermotogaceae 6166 188709 1 10 0 17 genus 4752 Thermotoga 2335 1 81 0 11 446 species Thermotoga caldifontis 1508419 0 1 2336 species Thermotoga maritima 315 0 1 496 species Thermotoga petrophila 93929 1 0 Thermotoga neapolitana species 733 2337 0 1 1 0 93930 549 Thermotoga naphthophila species no rank 1788 2631113 4 0 126738 Thermotoga sp. RQ7 715 species 0 1 0 1 1157948 388 species Thermotoga sp. 2812B 126740 species 307 Thermotoga sp. RQ2 1 0 1 0 1157947 Thermotoga sp. Cell2 species 378 1508420 species Thermotoga profunda 344 0 1 1 36 0 5 1643951 1404 genus Pseudothermotoga Pseudothermotoga thermarum species 428 119394 0 1 177758 species 354 Pseudothermotoga lettingae 1 0 1 0 57487 Pseudothermotoga hypogea species 242 1 0 38322 344 Pseudothermotoga elfii species Fervidobacteriaceae 4489 family 1643950 9 0 9 1 genus Fervidobacterium 1776 2422 1 6 0 4 species 462 Fervidobacterium nodosum 2424 1 0 Fervidobacterium pennivorans species 816 93466 1 0 0 1 2423 492 species Fervidobacterium islandicum genus 2704 2420 4 0 2676525 no rank 1123 2 0 0 1 1462747 species 554 Thermosipho sp. 1063 1437364 species Thermosipho sp. 1070 569 0 1 2421 Thermosipho africanus 1074 species 0 1 1 0 Thermosipho melanesiensis 507 species 46541 phylum 1138 68297 0 6 1 1 0 6 class 1138 Dictyoglomia 203486 1 1 0 5 203487 order Dictyoglomales 1137 203488 1136 family Dictyoglomaceae 2 1 0 4 genus Dictyoglomus 1134 13 3 0 1 1 species Dictyoglomus turgidum 628 513050 0 1 species 505 Dictyoglomus thermophilum 14 0 1 phylum 10611 Acidobacteria 57723 21 8 1 0 Blastocatellia class 897 1562566 3 8 1 0 genus 889 Chloracidobacterium 458032 9 1 0 2 458033 880 Chloracidobacterium thermophilum species 1 0 0 134 1 17 204432 Acidobacteriia 9706 class 204433 7593 Acidobacteriales order 12 0 1 72 11 1 66 0 204434 family 7521 Acidobacteriaceae 2935 Granulicella genus 940557 3 16 1 0 940614 Granulicella mallensis species 1508 0 1 940615 species 1411 Granulicella tundricola 1 0 genus 1460 Acidobacterium 33973 2 0 1 11 1449 species Acidobacterium capsulatum 33075 1 0 0 1 16 2 genus Candidatus Koribacter 851 658061 Candidatus Koribacter versatilis species 835 658062 1 0 2209 genus Terriglobus 392733 0 1 3 3 0 1 870903 species Terriglobus saanensis 981 0 1 392734 species Terriglobus roseus 1225 332160 1979 Solibacterales order 4 1 43 0 3 1 18 0 332161 Solibacteraceae family 1936 332162 1918 Candidatus Solibacter genus 0 14 1 2 332163 1904 Candidatus Solibacter usitatus species 0 1 phylum 34477 32066 0 23 1 11 0 23 Fusobacteriia class 34477 203490 22 0 38 1 203491 34466 order Fusobacteriales 10 0 20 1 family 9459 Leptotrichiaceae 1129771 34104 1316 genus 1 0 0 1 1316 Streptobacillus moniliformis species 34105 Sneathia genus 1212 168808 1 1 0 2 0 1 187101 1211 species Sneathia amnii 32068 1472 genus 0 1 0 1 826 species 1472 Sebaldella termitidis 7 1 0 5 Leptotrichia 5439 genus 32067 40542 Leptotrichia buccalis species 1077 0 1 3 0 no rank 4355 2633022 712368 Leptotrichia sp. oral taxon 498 1196 species 1 0 0 1 712357 1851 species Leptotrichia sp. oral taxon 212 Leptotrichia sp. oral taxon 847 species 1308 1785996 1 0 11 0 1 28 203492 24969 Fusobacteriaceae family genus Fusobacterium 23557 848 9 1 86 0 1 0 species 1433 Fusobacterium mortiferum 850 Fusobacterium periodonticum species 5176 860 1 0 1 0 Fusobacterium hwasookii species 2106 1583098 species Fusobacterium necrophorum 904 859 1 0 0 1 species Fusobacterium gonidiaformans 852 849 species Fusobacterium varium 3517 856 1 0 861 1759 species Fusobacterium ulcerans 1 0 species Fusobacterium nucleatum 7724 851 1 0 1384 genus 167639 1 0 0 1 167642 1384 Ilyobacter polytropus species 0 89 603161 clade 1783257 26 9 1 0 phylum 578542 Verrucomicrobia 74201 0 2 170 class 134549 134550 Candidatus Xiphinematobacter genus 170 1 1 0 2 0 1 169 no rank 2648876 1704307 species Candidatus Xiphinematobacter sp. Idaho Grape 169 1 0 2 0 2683 no rank 417295 0 1 1329 species Verrucomicrobia bacterium IMCC26134 1637999 1354 species Verrucomicrobia bacterium 2026799 0 1 0 1 44 11 class 6692 Opitutae 414999 169 1 0 7 415000 order 5672 Opitutales 134623 Opitutaceae 5503 family 0 1 29 6 1961799 2121 genus Lacunisphaera 0 27 1 2 2094 species Lacunisphaera limnophila 1838286 0 1 1 0 no rank 2254 278955 2254 species Opitutaceae bacterium TAV5 794903 1 0 2 2 1 0 Opitutus genus 1099 178440 species Opitutus terrae 1097 107709 1 0 1 8 0 3 Puniceicoccales 976 order 415001 0 2 968 family 415002 442430 Coraliomargarita genus 968 0 10 1 2 Coraliomargarita akajimensis 958 species 395922 1 0 1 5 0 6 203494 Verrucomicrobiae 568435 class 568430 Verrucomicrobiales order 48461 18 1 0 5 0 37 1 4 family Akkermansiaceae 568412 1647988 3 0 1 24 genus 568375 Akkermansia 239934 species Akkermansia muciniphila 566150 239935 1 0 1679444 2201 species Akkermansia glycaniphila 0 1 Methylacidiphilae class 553 1955630 4 2 1 0 3 0 717963 order 551 717964 family 551 3 0 3 0 1 1 511745 genus 551 Methylacidiphilum 591154 species 237 Methylacidiphilum fumariolicum 0 1 0 1 species Methylacidiphilum infernorum 313 511746 0 1 7 34 203682 15391 phylum Planctomycetes 1 87 0 23 203683 class 11891 Planctomycetia 0 2 672 order 2691355 0 2 family 672 1914233 0 1 1 2 Gemmata 672 genus 113 no rank 671 2622970 1 0 Gemmata sp. SH-PL17 671 species 1630693 0 1 Planctomycetales order 5823 112 1 175 0 10 Planctomycetaceae family 5648 126 1 33 0 9 0 1 genus 597 1649480 120 Planctopirus limnophila 597 species 1 0 Planctomyces 3333 genus 118 1 54 0 3 2 0 3279 no rank 2648843 1 0 Planctomyces sp. SH-PL62 species 2171 1636152 1108 species Planctomyces sp. SH-PL14 1632864 1 0 0 1 8 2 1649490 genus 449 Rubinisphaera species Rubinisphaera brasiliensis 441 119 0 1 1936111 genus 1236 Fuerstia 0 1 1 2 Fuerstia marisgermanicae species 1235 1891926 0 1 4 0 2691354 1845 order 0 3 family 867 2691357 0 1 411 genus 265488 0 1 species Rhodopirellula baltica 411 265606 123 456 Pirellula genus 1 2 0 2 species Pirellula staleyi 454 125 1 0 1 0 978 family 2691358 1 0 978 genus 1676125 1331910 species 978 Thermogutta terrifontis 0 1 3464 order 2691356 0 6 1763524 family 3464 Isosphaeraceae 0 1 38 6 466152 1215 genus 1 0 0 1 466153 1215 species Singulisphaera acidiphila genus Isosphaera 742 127 4 1 0 2 128 species Isosphaera pallida 738 1 0 0 1 7 2 1763521 genus Paludisphaera 1469 1387353 Paludisphaera borealis species 1462 1 0 3 0 2517206 class 871 3 0 5 1 1127829 order Candidatus Brocadiales 871 0 2 1127830 family 866 0 5 1 2 genus Candidatus Kuenenia 866 380738 1 0 174633 Candidatus Kuenenia stuttgartiensis 861 species 666505 Phycisphaerae 2622 class 7 0 21 1 2483366 1298 order 2 0 family 1298 2483367 0 2 2483368 genus 1298 0 2 1941349 species 721 Phycisphaerae bacterium ST-PulAB-D4 0 1 0 1 577 Phycisphaerae bacterium L21-RPul-D3 species 1940790 1303 Phycisphaerales order 666506 4 34 1 0 666507 family 1269 Phycisphaeraceae 3 0 1 13 1 5 0 2 666508 1256 genus Phycisphaera 547188 species Phycisphaera mikurensis 1251 0 1 phylum 5249 256845 0 3 0 79 1 3 1313211 class Lentisphaeria 5249 0 1077 1 2 278082 Victivallales 5170 order 0 1 4093 no rank 1674876 1 0 2094242 4093 Victivallales bacterium CCUG 44730 species phylum 2983 204428 21 0 class 2983 Chlamydiia 204429 0 1 5 21 1151 order 1963360 0 7 2 1 3 0 Simkaniaceae family 131 92712 1 0 128 genus 34093 83561 Simkania negevensis species 128 1 0 92714 251 family 0 1 1 0 71666 251 genus 71667 species Waddlia chondrophila 251 0 1 Parachlamydiaceae 769 family 92713 0 1 4 4 0 1 282132 genus 243 243 species Candidatus Protochlamydia naegleriophila 389348 0 1 83551 522 Parachlamydia genus 2 1 10 0 Parachlamydia acanthamoebae species 512 83552 1 0 51291 order 1827 0 13 809 Chlamydiaceae family 1827 13 1 1 0 12 0 1113537 no rank 1826 Chlamydia genus 1826 810 12 5 1 0 83560 species 110 Chlamydia muridarum 1 0 83558 Chlamydia pneumoniae species 119 0 1 1 0 83554 Chlamydia psittaci species 156 species Chlamydia gallinacea 207 1457153 0 1 1 0 Chlamydia abortus 82 species 83555 813 Chlamydia trachomatis 85 species 0 1 1 0 species Chlamydia suis 56 83559 0 1 1457141 Chlamydia avium 79 species 85991 Chlamydia pecorum species 189 1 0 83557 99 Chlamydia caviae species 1 0 0 1 Chlamydia felis 639 species 83556 134625 996 phylum 0 5 996 Kiritimatiellae class 1921781 5 1 10 0 9 1 0 4 1921782 order Kiritimatiellales 986 7 1 0 3 1921783 family Kiritimatiellaceae 977 0 1 34 2 Kiritimatiella genus 970 1921784 0 1 1307763 Kiritimatiella glycovorans species 936 22 0 6077 phylum 200783 1 11 0 22 class 6077 Aquificae 187857 3 0 2 1 Desulfurobacteriales 1207 order 1485951 0 2 558314 family 1205 1 0 384 genus 171868 228745 Thermovibrio ammonificans species 384 1 0 1 0 821 genus 64159 1 0 Desulfurobacterium thermolithotrophum species 821 64160 Aquificales 4859 order 32069 0 1 1 18 no rank 358 90150 1 0 358 genus 412592 0 1 0 1 412593 Thermosulfidibacter takaii species 358 224027 family Hydrogenothermaceae 2201 0 4 1 4 182899 559 genus 0 1 0 1 559 species Persephonella marina 309805 0 2 genus 1638 212790 1093 no rank 2619248 1 0 species Sulfurihydrogenibium sp. YO3AOP1 1093 436114 0 1 1 0 545 species Sulfurihydrogenibium azorense 309806 Aquificaceae 2299 family 64898 3 1 0 12 0 1 genus 246 2713 1 0 63363 Aquifex aeolicus species 246 1 0 202 genus 939 940 species Hydrogenobacter thermophilus 202 0 1 168657 genus Hydrogenobaculum 1483 6 21 1 0 1462 no rank 2622382 5 0 1 0 Hydrogenobaculum sp. SN species 304 547146 1 0 246 Hydrogenobaculum sp. Y04AAS1 species 380749 species Hydrogenobaculum sp. SHO 304 547145 0 1 1 0 Hydrogenobaculum sp. 3684 304 species 547143 species Hydrogenobaculum sp. HO 304 547144 0 1 365 genus Thermocrinis 75905 3 0 1 1 75906 Thermocrinis ruber species 252 1 0 136094 species Thermocrinis albus 112 0 1 phylum 50552 203691 0 57 57 1 141 0 class 50552 Spirochaetia 203692 1643686 Brachyspirales order 9301 7 6 1 0 6 0 1 235 9295 Brachyspiraceae family 143786 genus 9060 Brachyspira 29521 267 1 0 5 1 0 1828 Brachyspira intermedia species 84377 84378 Brachyspira murdochii species 1272 1 0 1 0 52584 Brachyspira pilosicoli species 3473 0 1 2220 Brachyspira hyodysenteriae species 159 136 37521 order Spirochaetales 0 899 1 41 0 1 7 17 3994 family Borreliaceae 1643685 138 1934 Borrelia genus 8 11 1 0 1 0 Borrelia anserina species 207 143 1 0 44449 species Borrelia recurrentis 259 0 1 287 Borrelia hermsii species 140 47466 349 Borrelia miyamotoi species 1 0 0 1 142 Borrelia turicatae species 338 0 1 40834 species Borrelia duttonii 254 Borrelia parkeri 229 species 141 1 0 64895 Borreliella genus 2053 8 0 98 1 species Borreliella valaisiana 154 62088 1 0 1 0 1674146 Borrelia mayonii 220 species 1 0 664662 Borreliella bavariensis species 181 64897 Borreliella bissettii 207 species 1 0 1 0 species Borreliella afzelii 318 29518 1 0 species Borreliella burgdorferi 591 139 29519 Borreliella garinii 284 species 0 1 137 Spirochaetaceae family 32628 465 1 0 23 Sphaerochaeta 4180 genus 399320 4 1 2 0 species 997 Sphaerochaeta pleomorpha 1131707 1 0 1 0 species Sphaerochaeta globosa 1941 1131703 0 1 species Sphaerochaeta coccoides 1240 273376 146 genus 2568 Spirochaeta 1 9 0 3 0 1 1317 Spirochaeta thermophila species 154 1 0 46355 Spirochaeta africana species 1242 0 1 genus 1364 1616789 1 0 Salinispira pacifica 1364 species 1307761 157 Treponema 22716 genus 12 0 1 2813 1 0 409322 species Treponema pedis 897 1 0 species 1823 Treponema brennaborense 81028 0 1 215591 1340 species Treponema caldarium 1 0 221027 3188 species Treponema putidum 158 species Treponema denticola 1468 1 0 167 Treponema succinifaciens 5196 species 0 1 0 1 160 species Treponema pallidum 325 0 1 Treponema azotonutricium 1393 species 150829 1 0 no rank 2702 2638727 1 0 1539298 species Treponema sp. OMZ 838 2702 0 1 88058 Treponema primitia species 1260 1 0 53435 species 311 Treponema paraluiscuniculi 0 1 4 2 1911556 Sediminispirochaeta genus 1335 0 1 1331 Sediminispirochaeta smaragdinae species 55206 8 0 order 3589 1643688 8 1 8 0 170 family Leptospiraceae 3589 338321 genus 497 0 1 0 1 species Turneriella parva 497 29510 0 1 11 6 Leptospira genus 3084 171 0 1 173 species Leptospira interrogans 1224 species Leptospira alstonii 371 28452 1 0 1 0 172 Leptospira biflexa species 570 174 Leptospira borgpetersenii 558 species 1 0 1 0 28183 species Leptospira santarosai 350 5 0 12 1 74152 1593 phylum Elusimicrobia 447830 747 class 2 0 order 747 1783344 2 0 747 family 1783343 0 2 1408194 747 genus 2 0 1 0 1408204 Candidatus Endomicrobium trichonymphae species 347 1408281 species Endomicrobium proavitum 400 0 1 99260 314 no rank 0 1 species uncultured Termite group 1 bacterium 314 167965 1 0 0 1 641853 520 class 641854 order 520 1 0 641876 520 family 1 0 423604 genus 520 1 0 423605 520 Elusimicrobium minutum species 1 0 2138240 phylum 534 0 1 0 1 class 534 2138243 1 0 order 534 2138246 0 1 2138247 family 534 68335 534 genus 0 1 Coprothermobacter proteolyticus species 534 35786 0 1 13 0 40117 phylum 6175 203693 6175 class Nitrospira 13 25 1 0 23 1 0 12 order Nitrospirales 6150 189778 6127 Nitrospiraceae family 189779 0 1 13 11 1557 Leptospirillum genus 179 1 5 0 4 1 0 species group 537 261385 species Leptospirillum sp. Group II 'CF-1' 537 1660083 0 1 655606 species group 307 0 1 1 0 307 Leptospirillum ferrooxidans species 180 0 1 261386 708 species group 0 1 708 species Leptospirillum ferriphilum 178606 5 0 85 1 genus Nitrospira 3951 1234 species 694 Nitrospira defluvii 330214 0 1 1715989 832 Candidatus Nitrospira inopinata species 1 0 1325564 Nitrospira japonica species 1039 0 1 42253 Nitrospira moscoviensis 1301 species 0 1 1 0 606 genus 28261 28262 species Thermodesulfovibrio yellowstonii 606 1 0 1716 0 12990272 clade 1783272 834311 phylum Actinobacteria 201174 652 1 174 0 4 0 1752188 no rank 998 species 75 Actinobacteria bacterium IMCC26077 1848755 1 0 0 1 1848756 Actinobacteria bacterium IMCC26103 species 139 1 0 1848754 species 451 Actinobacteria bacterium IMCC19121 0 1 1848255 species Actinobacteria bacterium IMCC25003 333 1 6184 0 599 654861 class Actinobacteria 1760 order 867 Actinopolysporales 622450 0 1 4 4 3 0 1 15 Actinopolysporaceae family 863 622451 Actinopolyspora 848 genus 1849 2 0 25 1 414996 823 species Actinopolyspora erythraea 1 0 1169 1 0 144 85006 92836 order Micrococcales family 1378 Brevibacteriaceae 85019 3 0 13 1 15 1 0 2 1696 1365 Brevibacterium genus 1703 1350 Brevibacterium linens species 1 0 0 2 699 family 125316 84756 genus Beutenbergia 699 2 0 1 13 1 0 686 species Beutenbergia cavernae 84757 0 1 84 9 4872 Promicromonosporaceae family 85017 genus 1260 Xylanimonas 186188 2 1 8 0 Xylanimonas cellulosilytica species 1252 186189 0 1 0 44 1 3 157920 genus 1825 Cellulosimicrobium 0 1 1710 Cellulosimicrobium cellulans 843 species 1 0 2624466 938 no rank 1 0 1980001 species Cellulosimicrobium sp. TH-20 938 254250 Isoptericola 1703 genus 0 63 1 3 0 1 372663 871 species Isoptericola dokdonensis 139208 769 Isoptericola variabilis species 0 1 38615 family Micrococcaceae 1268 39 0 1 984 0 1 2078575 535 genus Arthrobacter sp. IHBB 11108 species 535 1618207 0 1 1269 genus Micrococcus 1023 2 0 1 16 1270 species Micrococcus luteus 1007 1 0 0 1 7 3 32207 Rothia genus 8865 species Rothia dentocariosa 656 2047 0 1 43675 8202 Rothia mucilaginosa species 0 1 4 58 1 0 57493 genus 2568 Kocuria 446860 species Kocuria flava 823 1 0 0 1 Kocuria palustris species 682 71999 0 1 species Kocuria rhizophila 1005 72000 genus 277 1645 0 1 1 0 species Renibacterium salmoninarum 277 1646 1 27 0 2 895 genus Sinomonas 596707 37927 Sinomonas atrocyanea species 868 1 0 genus 16953 Arthrobacter 1663 15 0 418 1 no rank 13049 235627 12 0 1 0 Arthrobacter sp. U41 species 1148 1849032 1690248 Arthrobacter sp. LS16 species 1655 0 1 290399 Arthrobacter sp. FB24 species 1144 1 0 0 1 893 Arthrobacter sp. PAMC 25486 species 1494608 1 0 species Arthrobacter sp. YC-RL1 1807 1652545 0 1 species Arthrobacter sp. YN 800 2020486 species Arthrobacter sp. QXT-31 1129 1357915 1 0 species Arthrobacter sp. ATCC 21022 753 1771959 0 1 0 1 1118963 986 Arthrobacter sp. Rue61a species 1704044 species 1079 Arthrobacter sp. ERGS1:01 1 0 1 0 1806905 species Arthrobacter sp. ZXY-2 820 Arthrobacter sp. PGP41 species 835 2079227 1 0 1430 species Arthrobacter crystallopoietes 37928 0 1 0 1 Arthrobacter alpinus 2056 species 656366 2 0 17 1 genus Neomicrococcus 492 1868332 556325 475 Neomicrococcus aestuarii species 0 1 1742993 3297 genus Pseudarthrobacter 4 37 1 0 1 0 1060 Pseudarthrobacter chlorophenolicus species 85085 1 0 121292 species Pseudarthrobacter sulfonivorans 1225 361575 975 species Pseudarthrobacter phenanthrenivorans 1 0 1652 genus Glutamicibacter 1742989 1 17 0 2 1635 Glutamicibacter arilaitensis species 256701 1 0 1742992 1074 Paenarthrobacter genus 2 0 3 1 0 1 43663 species 1071 Paenarthrobacter aurescens 145360 family Sanguibacteraceae 948 0 1 6 3 1 36 0 2 60919 genus 942 Sanguibacter 1 0 60920 species Sanguibacter keddieii 906 2 0 577468 292 no rank 292 genus Tropheryma 2038 2 6 1 0 species Tropheryma whipplei 286 2039 0 1 9 0 58 1 85021 Intrasporangiaceae family 3742 1 21 0 2 53457 genus 678 Janibacter 0 1 657 Janibacter indicus species 857417 Arsenicicoccus 1133 genus 267408 1 37 0 2 0 1 2663846 no rank 1096 0 1 1658671 1096 species Arsenicicoccus sp. oral taxon 190 2 0 1 21 Intrasporangium genus 656 53357 53358 species Intrasporangium calvum 635 0 1 2 0 36 1 1217 genus Serinicoccus 265976 1181 species Serinicoccus sp. JLT9 1758689 0 1 2 0 651 family 85022 2 22 1 0 43673 Jonesia genus 651 0 1 43674 Jonesia denitrificans species 629 7 1 0 3 Dermatophilaceae family 506 85018 1 9 0 2 Dermatophilus genus 499 1862 1863 Dermatophilus congolensis species 490 1 0 85016 family 3451 Cellulomonadaceae 6 1 36 0 1707 genus Cellulomonas 3415 5 0 1 48 1711 Cellulomonas flavigena species 946 0 1 11 species Cellulomonas gilvus 860 1 0 619 no rank 2620175 0 1 0 1 2003551 Cellulomonas sp. PSBB021 species 619 1708 Cellulomonas fimi 942 species 0 1 0 52 1 7 145357 2476 family Dermacoccaceae 2 0 9 1 57495 Dermacoccus genus 816 1 0 Dermacoccus nishinomiyaensis species 807 1274 2 0 1 5 745364 Luteipulveratus 793 genus 571913 788 species Luteipulveratus mongoliensis 0 1 22 1 0 2 57499 genus 815 Kytococcus 0 1 1276 793 species Kytococcus sedentarius 85020 6641 Dermabacteraceae family 10 1 50 0 43668 Brachybacterium genus 5494 6 0 150 1 1 0 2623841 no rank 1058 1 0 Brachybacterium sp. P6-10-X1 species 1058 1903186 1 0 2017484 species Brachybacterium sp. VM2412 1057 0 1 Brachybacterium sp. VR2415 species 1060 2017485 1331682 980 species Brachybacterium ginsengisoli 0 1 1 0 Brachybacterium faecium species 1189 43669 1 0 534 genus 472568 species Devriesea agamarum 534 472569 0 1 36739 genus 563 Dermabacter 3 1 0 2 0 1 1630135 560 Dermabacter vaginalis species 27396 family Microbacteriaceae 85023 48 1 308 0 0 1 447237 981 genus 1 0 no rank 981 2626248 species 981 Frondihabitans sp. PAMC 28766 1795630 0 1 3 0 1 11 799 Rathayibacter genus 33886 270 species Rathayibacter toxicus 145458 1 0 33888 518 species Rathayibacter tritici 0 1 genus 1799 Leifsonia 110932 2 0 16 1 0 1 1575 Leifsonia xyli 1783 species 2 1 4 0 33877 genus 1068 Agromyces 1 0 species Agromyces aureus 1064 453304 3 1 24 0 69578 Cryobacterium genus 2672 0 1 Cryobacterium arcticum species 1246 670052 1 0 no rank 1402 2649013 0 1 Cryobacterium sp. LW097 1402 species 1978566 0 1 86 4 Curtobacterium 2618 genus 2034 1 0 918 species Curtobacterium pusillum 69373 0 2 257496 no rank 1614 0 1 1561023 904 species Curtobacterium sp. MR_MD2014 1 0 1905847 Curtobacterium sp. BH-2-1-1 species 710 Cnuibacter genus 628 1759331 2 0 1 4 species Cnuibacter physcomitrellae 624 1619308 0 1 genus Pontimonas 418 1434032 2 4 1 0 0 1 1159327 species Pontimonas salivibrio 414 1655488 no rank 335 2 0 0 2 335 clade 1655489 529883 genus 335 2 0 535712 species 135 Candidatus Rhodoluna planktonica 1 0 1 0 Rhodoluna lacicola species 200 529884 1 216 0 6 3656 genus Clavibacter 1573 28447 Clavibacter michiganensis species 3440 0 1 738 5 subspecies Clavibacter sepedonicus 779 31964 0 1 1 0 subspecies 602 Clavibacter nebraskensis 31963 subspecies 599 Clavibacter insidiosus 33014 0 1 1 0 1874630 Clavibacter capsici 722 subspecies 1 1 0 2 genus 992 Microterricola 518733 0 1 412690 species 991 Microterricola viridarii 418 genus Aurantimicrobium 1705353 0 1 1 2 708131 Aurantimicrobium minutum species 417 1 0 0 198 1 14 33882 genus Microbacterium 10123 Microbacterium hominis species 1006 162426 1 0 8 0 2609290 no rank 6058 568 species Microbacterium sp. 1.5R 1916917 0 1 1 0 1696072 Microbacterium sp. CGR1 species 542 1906742 Microbacterium sp. BH-3-3-3 species 750 1 0 1 0 1714373 963 Microbacterium sp. No. 7 species 367477 species 717 Microbacterium sp. XT11 0 1 Microbacterium sp. str. 'China' 887 species 2103230 0 1 0 1 species Microbacterium sp. PAMC 28756 955 1795053 1938334 676 Microbacterium sp. TPU 3598 species 1 0 983 species Microbacterium aurum 36805 0 1 84292 515 species Microbacterium chocolatum 0 1 0 1 species Microbacterium paludicola 741 300019 2033 Microbacterium testaceum species 622 0 1 0 1 2 2 genus Microcella 581 337004 1 0 Microcella alkaliphila species 579 279828 41 0 105 1 Pseudonocardiales order 39832 85010 39727 family Pseudonocardiaceae 2070 0 1 534 40 2 0 4 1 43356 2333 Kutzneria genus 1 0 2329 species Kutzneria albida 43357 5469 genus Actinoalloteichus 65496 1 72 0 6 340345 species 882 Actinoalloteichus hymeniacidonis 0 1 2644606 no rank 2199 0 2 1 0 Actinoalloteichus sp. GBA129-24 species 1080 1612551 2072503 Actinoalloteichus sp. AHMU CJ021 species 1119 0 1 Actinoalloteichus hoggarensis species 1160 1470176 0 1 Actinoalloteichus sp. ADI127-7 species 1156 1612552 0 1 1 65 0 3 40566 genus 4264 Actinosynnema 0 1 40567 Actinosynnema mirum 2043 species 42197 Actinosynnema pretiosum 2156 species 1 0 Saccharothrix genus 1923 2071 0 1 1 2 0 1 103731 species 1922 Saccharothrix espanaensis 2029 genus 1621 0 1 0 1 860235 1621 species Kibdelosporangium phytohabitans genus Prauserella 911 142577 0 3 1 2 1 0 908 species Prauserella marina 530584 1 202 0 7 1813 Amycolatopsis 9891 genus 0 1 33910 1776 Amycolatopsis mediterranei species 1814 1325 species Amycolatopsis methanolica 0 1 0 2 2618356 2718 no rank 1 0 species 1397 Amycolatopsis sp. AA4 1896961 1911175 species 1321 Amycolatopsis sp. BJA-103 0 1 31958 species Amycolatopsis orientalis 2502 0 1 208439 Amycolatopsis japonica species 1368 1 0 0 149 1 8 1847 7860 Pseudonocardia genus 0 6 2619320 6471 no rank 1688404 1108 species Pseudonocardia sp. EC080610-09 0 1 0 1 species Pseudonocardia sp. AL041005-10 1236 445576 1 0 1690815 961 Pseudonocardia sp. HH130630-07 species 0 1 Pseudonocardia sp. EC080619-01 1117 species 1096856 1 0 Pseudonocardia sp. EC080625-04 species 978 1096868 1 0 1641402 Pseudonocardia sp. HH130629-09 1071 species Pseudonocardia dioxanivorans species 1240 240495 0 1 2 0 20 1 165301 1573 genus Lentzea Lentzea guizhouensis 1553 species 1586287 0 1 1 7 0 2 1835 Saccharopolyspora genus 1679 1836 species 1672 Saccharopolyspora erythraea 0 1 1110 Alloactinosynnema genus 674734 2 1 2 0 2636053 1108 no rank 1 0 0 1 1653480 Alloactinosynnema sp. L-07 1108 species Saccharomonospora genus 559 1851 2 0 1 5 1852 554 species Saccharomonospora viridis 0 1 85014 1563 Glycomycetales order 4 0 6 1 85034 Glycomycetaceae 1557 family 0 38 1 3 283810 genus Stackebrandtia 1519 13 1 0 2 0 1 283811 species Stackebrandtia nassauensis 1506 2 0 no rank 802 1643818 147067 genus Thermobispora 802 0 9 1 2 0 1 species Thermobispora bispora 793 2006 4 1 1 0 622452 order Kineosporiales 1279 0 26 1 3 83778 family 1278 Kineosporiaceae 2 0 3 1 genus Kineococcus 1252 33981 1249 species Kineococcus radiotolerans 131568 0 1 85004 order 167936 Bifidobacteriales 1 208 0 26 0 7505 1 25 31953 167728 Bifidobacteriaceae family 1 0 genus 593 196081 78259 593 species Scardovia inopinata 1 0 0 1 1 2 196082 1327 genus Parascardovia 0 1 78258 Parascardovia denticolens species 1326 157293 genus Bifidobacterium 1678 1 3613 0 19 158787 species Bifidobacterium scardovii 2923 1 0 0 1 3290 species Bifidobacterium angulatum 1683 0 1 638619 Bifidobacterium actinocoloniiforme species 1155 1691 Bifidobacterium indicum species 807 1 0 28025 Bifidobacterium animalis species 1960 1 0 1 0 33905 Bifidobacterium thermophilum species 1487 1689 species Bifidobacterium dentium 1949 1 0 1684 species Bifidobacterium asteroides 1702 0 1 1 0 Bifidobacterium coryneforme species 667 1687 0 1 35760 species 1632 Bifidobacterium choerinum 216816 species Bifidobacterium longum 57027 0 1 1 0 species Bifidobacterium adolescentis 4395 1680 1685 15784 species Bifidobacterium breve 1 0 0 1703 1 2 1686 5498 Bifidobacterium catenulatum species 0 1 630129 3795 Bifidobacterium kashiwanohense subspecies 0 1 28026 Bifidobacterium pseudocatenulatum species 6201 1681 species 45110 Bifidobacterium bifidum 0 1 0 1 1694 species 2093 Bifidobacterium pseudolongum 2 0 1 7 1010 genus Gardnerella 2701 0 1 2702 Gardnerella vaginalis species 1003 8 1 18 0 1643682 Geodermatophilales order 3876 7 0 114 1 85030 Geodermatophilaceae family 3858 0 8 1 2 937 genus Blastococcus 38501 Blastococcus saxobsidens 929 species 138336 1 0 2 0 1 15 1228 genus Geodermatophilus 1860 1861 species 1213 Geodermatophilus obscurus 0 1 genus Modestobacter 1579 88138 2 0 1 28 0 1 477641 Modestobacter marinus species 1551 0 1 1058 162 129088 order Corynebacteriales 85007 4 0 7 1 Dietziaceae family 1499 85029 Dietzia genus 1492 37914 3 11 1 0 0 1 2617939 no rank 985 712270 species Dietzia sp. oral taxon 368 985 0 1 499555 496 Dietzia timorensis species 0 1 1762 family Mycobacteriaceae 43488 1 154 0 57 697025 genus Hoyosella 435 0 1 1 2 0 1 Hoyosella subflava species 434 639313 1409 genus 1073531 0 2 1 0 875328 Mycobacterium sinense species 710 species Mycobacterium terrae 699 1788 0 1 34 1927 1 0 1763 genus Mycobacterium 24799 8 0 species group 5114 120793 0 1 Mycobacterium colombiense species 1017 339268 1440 species Mycobacterium intracellulare 1767 4 1 268 0 0 1 35617 193 subspecies Mycobacterium indicus pranii Mycobacterium yongonense 338 subspecies 1203599 1 0 0 1 222805 Mycobacterium chimaera subspecies 641 species 754 Mycobacterium marseillense 701042 0 1 1764 1632 species Mycobacterium avium 0 1 0 1 1138383 Mycobacterium paraintracellulare species 271 1 0 species group 752 2249310 Mycobacterium shigaense species 752 722731 0 1 1809 Mycobacterium ulcerans 648 species 0 1 species group 2049 77643 0 4 0 1 Mycobacterium canettii species 578 78331 species Mycobacterium tuberculosis 1471 1773 0 1 538 3 33894 456 Mycobacterium africanum biotype 1 0 477 Mycobacterium bovis biotype 1765 1 0 29311 Mycobacterium haemophilum 825 species 1 0 0 13 no rank 9867 2642494 1570328 species Mycobacterium sp. NRRL B-3805 795 1 0 1 0 189918 682 species Mycobacterium sp. KMS 1 0 212767 755 species Mycobacterium sp. JS623 1 0 Mycobacterium sp. QIA-37 species 485 1561223 2051552 Mycobacterium sp. PYR15 species 854 1 0 0 1 species Mycobacterium sp. EPa45 593 1545728 1879023 1305 species Mycobacterium sp. djl-10 0 1 Mycobacterium sp. JLS species 724 164757 1 0 0 1 Mycobacterium sp. MCS species 665 164756 species Mycobacterium sp. WY10 865 1920667 0 1 0 1 1273687 950 species Mycobacterium sp. VKM Ac-1817D 1682113 species 984 Mycobacterium sp. YC-RL4 1 0 0 1 1168287 210 Mycobacterium sp. MOTT36Y species species Mycobacterium marinum 682 1781 0 1 261524 species Mycobacterium liflandii 634 0 1 1 0 786 Mycobacterium kansasii species 1768 1 0 Mycobacterium dioxanotrophicus 1189 species 482462 0 1 1769 species Mycobacterium leprae 326 genus 12739 1866885 0 13 1766 species Mycobacterium fortuitum 1072 1 0 110539 Mycobacterium vanbaalenii species 908 0 1 1 0 species Mycobacterium aurum 1063 1791 1772 Mycobacterium smegmatis species 1296 1 0 0 1 134601 1046 species Mycobacterium goodii 0 1 1810 species Mycobacterium vaccae 974 1771 Mycobacterium phlei species 1033 0 1 1 0 795 Mycobacterium neoaurum species 1795 1 0 1797 983 Mycobacterium thermoresistibile species Mycobacterium rhodesiae species 779 36814 0 1 1804 875 species Mycobacterium gilvum 1 0 1800 Mycobacterium chubuense species 860 1 0 0 1 species 1055 Mycobacterium litorale 758802 5 0 670516 3952 genus 1 0 83262 666 Mycobacterium immunogenum species 1 0 Mycobacterium abscessus species 1543 36809 0 1 1774 Mycobacterium chelonae species 514 594 Mycobacterium saopaulense species 1578165 0 1 0 1 1520670 635 Mycobacterium stephanolepidis species 1653 family Corynebacteriaceae 44675 52 0 405 1 genus Corynebacterium 44270 1716 51 1 1080 0 1 0 species Corynebacterium mustelae 855 571915 Corynebacterium callunae species 773 1721 0 1 1956 species Corynebacterium striatum 43770 0 1 1 0 species Corynebacterium pseudotuberculosis 526 1719 species Corynebacterium frankenforstense 1034 1230998 1 0 38289 Corynebacterium jeikeium 1697 species 0 1 1 0 969 species Corynebacterium aquilae 203263 1 0 89154 588 Corynebacterium terpenotabidum species 35757 species 374 Corynebacterium cystitidis 1 0 191610 534 Corynebacterium atypicum species 1 0 1 0 1072256 species 688 Corynebacterium uterequi 1 0 65058 Corynebacterium ulcerans species 925 1 0 1408191 Corynebacterium deserti species 954 0 1 575200 Corynebacterium maris 930 species 0 1 Corynebacterium kutscheri 321 species 35755 0 2 2624378 no rank 1518 1487956 species Corynebacterium sp. ATCC 6931 890 1 0 702967 species Corynebacterium sp. NML98-0116 628 0 1 0 1 Corynebacterium phocae 470 species 161895 species Corynebacterium glutamicum 1839 1718 0 1 Corynebacterium humireducens 1016 species 1223514 0 1 1705 1079 Corynebacterium stationis species 0 1 1 0 1569 species Corynebacterium vitaeruminis 38305 1 0 1404244 Corynebacterium glyciniphilum species 1331 0 1 1727 872 species Corynebacterium variabile 0 1 92706 species [Brevibacterium] flavum 1271 349751 837 Corynebacterium marinum species 0 1 0 1 Corynebacterium efficiens species 959 152794 1121358 Corynebacterium doosanense 758 species 0 1 1717 species Corynebacterium diphtheriae 828 1 0 401472 species Corynebacterium ureicelerivorans 577 1 0 0 1 161896 species Corynebacterium camporealensis 622 species Corynebacterium simulans 1093 146827 1 0 1 0 28028 531 species Corynebacterium flavescens 1 0 Corynebacterium kroppenstedtii species 494 161879 1 0 160386 species Corynebacterium casei 781 0 1 species Corynebacterium lactis 715 1231000 0 1 108486 Corynebacterium falsenii species 1005 species 787 Corynebacterium imitans 156978 1 0 0 1 species 952 Corynebacterium halotolerans 225326 0 1 136857 Corynebacterium testudinoris 958 species 1652495 Corynebacterium crudilactis species 1229 0 1 935 species Corynebacterium sphenisci 191493 1 0 904 species Corynebacterium aurimucosum 169292 1 0 258224 species 527 Corynebacterium resistens 0 1 species Corynebacterium ammoniagenes 471 1697 0 1 161899 species Corynebacterium singulare 825 1 0 species 446 Corynebacterium epidermidicanis 1050174 1 0 42817 Corynebacterium argentoratense species 483 1 0 43771 Corynebacterium urealyticum 772 species 0 1 Corynebacterium glaucum 612 species 187491 0 1 0 4 1 3 316606 family 384 Segniliparaceae 2 0 4 1 286801 genus 380 Segniliparus 1 0 286802 species Segniliparus rotundus 376 1 0 no rank 467 697024 genus 467 1847725 1 0 species Lawsonella clevelandensis 467 1528099 1 0 0 13 1 4 85028 family 1788 Tsukamurellaceae 109 1 0 3 2060 Tsukamurella 1775 genus 1 0 57704 930 Tsukamurella tyrosinosolvens species 0 1 species Tsukamurella paurometabola 736 2061 0 114 1 9 85026 family 6103 Gordoniaceae 2053 genus Gordonia 5989 8 0 1 88 no rank 1838 2657482 0 2 0 1 2059875 species 633 Gordonia sp. YC-JH1 species Gordonia sp. KTR9 1205 337191 1 0 796 Gordonia phthalatica species 1136941 0 1 1 0 84595 species Gordonia polyisoprenivorans 1142 0 1 2054 Gordonia bronchialis 786 species 1 0 1004901 599 species Gordonia iterans 0 1 2055 species Gordonia terrae 740 Nocardiaceae 29626 family 85025 31 0 186 1 1827 genus Rhodococcus 18088 23 1 688 0 0 1 37919 species 2304 Rhodococcus opacus no rank 7523 192944 0 12 1 0 679318 592 species Rhodococcus sp. WMMA185 1 0 Rhodococcus sp. YL-1 516 species 1045808 1 0 species 950 Rhodococcus sp. B7740 1564114 1 0 1570939 541 species Rhodococcus sp. 2G 641 species Rhodococcus sp. H-CA8f 1727214 0 1 0 1 1807790 species Rhodococcus sp. BH4 364 1 0 1805827 722 species Rhodococcus sp. MTM3W5.2 species 956 Rhodococcus sp. WB1 1033922 0 1 935199 Rhodococcus sp. p52 633 species 1 0 1 0 1723645 species Rhodococcus sp. 008 450 species Rhodococcus sp. PBTS 2 611 1653479 0 1 1653478 547 species Rhodococcus sp. PBTS 1 0 1 0 1 916 Rhodococcus ruber species 1830 0 1 species Rhodococcus qingshengii 545 334542 Rhodococcus hoagii species 1125 43767 1 0 species 562 Rhodococcus rhodochrous 1829 1 0 818 Rhodococcus fascians species 1828 0 1 0 1 1833 Rhodococcus erythropolis 1094 species 132919 1013 Rhodococcus jostii species 1 0 0 1 191292 Rhodococcus aetherivorans 868 species 0 1 103816 species Rhodococcus pyridinivorans 632 7 179 1 0 1817 genus 11352 Nocardia 0 1 37330 species Nocardia nova 1420 1 0 455432 species Nocardia terpenica 1453 37332 species Nocardia seriolae 1835 0 1 1 0 2237 Nocardia brasiliensis species 37326 0 1 37329 species Nocardia farcinica 1668 1 0 135487 species Nocardia cyriacigeorgica 2560 29 1 0 19 2037 19913 Actinomycetales order 18 0 4525 1 family 19884 Actinomycetaceae 2049 genus 1184 2529408 1 0 Actinomyces meyeri species 1184 52773 0 1 0 5 1 2 1653174 genus 734 Actinotignum 59505 Actinotignum schaalii species 729 1 0 2050 2158 genus Mobiluncus 0 1 128 2 0 1 2051 Mobiluncus curtisii species 2030 887 genus 28263 0 1 0 1 species Arcanobacterium haemolyticum 887 28264 genus 1448 Trueperella 1069494 3 1 0 2 1 0 1661 species 1445 Trueperella pyogenes 9 221 1 0 Actinomyces 8948 genus 1654 1852377 species Actinomyces pacaensis 1015 1 0 1960083 species 1049 Actinomyces gaoshouyii 0 1 1 0 544580 Actinomyces oris species 1199 3708 no rank 2609248 0 3 0 1 712122 species Actinomyces sp. oral taxon 414 1433 species 1351 Actinomyces sp. oral taxon 897 2081702 1 0 0 1 924 species Actinomyces sp. Chiba101 1851395 1912795 Actinomyces sp. VUL4_3 species 266 0 1 1 0 111015 Actinomyces radicidentis 1490 species 1 8 0 4 1289 order Nakamurellales 1643684 1281 family Nakamurellaceae 85031 43 1 0 3 0 1 13 2 53460 genus Nakamurella 1238 1 0 species Nakamurella multipartita 1225 53461 34 202 1 0 order 23974 Propionibacteriales 85009 family Nocardioidaceae 7600 85015 13 0 219 1 1 8 0 2 116071 1109 genus Micropruina 1101 species Micropruina glycogenica 75385 1 0 genus Kribbella 1158 182639 42 1 0 2 0 1 1116 Kribbella flavida species 182640 2044 1299 Pimelobacter genus 2 16 1 0 2045 species 1283 Pimelobacter simplex 1 0 1839 genus Nocardioides 2993 4 84 1 0 1 0 910 species Nocardioides dokdonensis 450734 1 0 Nocardioides sp. 78 923 species 2045452 1 0 2615069 1076 no rank 1 0 196162 species Nocardioides sp. JS614 1076 822 Aeromicrobium genus 2040 1 6 0 2 2041 Aeromicrobium erythreum species 816 1 0 31957 16172 family Propionibacteriaceae 20 0 1 241 1406 Propionimicrobium genus 203133 2 0 1 4 2633994 no rank 1402 1 0 1402 Propionimicrobium sp. Marseille-P3275 species 1871034 0 1 3 1 67 0 1743 Propionibacterium genus 3150 1744 species Propionibacterium freudenreichii 2627 0 1 0 1 456 no rank 2608905 Propionibacterium sp. oral taxon 193 species 456 671223 1 0 1 36 0 5 72763 Tessaracoccus 4756 genus 1610493 Tessaracoccus flavus species 1115 0 1 2635419 no rank 1246 1 0 0 1 1909732 1246 Tessaracoccus sp. T2.5-30 species 1332264 species Tessaracoccus aquimaris 1274 1 0 0 1 399497 1085 species Tessaracoccus flavescens 0 6 1 2 1009 Microlunatus genus 29404 0 1 species 1003 Microlunatus phosphovorus 29405 1912216 genus 2967 Cutibacterium 4 1 21 0 1747 Cutibacterium acnes 945 species 1 0 0 1 Cutibacterium granulosum species 788 33011 Cutibacterium avidum species 1213 33010 0 1 1 13 0 2 1912215 genus 1721 Acidipropionibacterium 1 0 1708 Acidipropionibacterium acidipropionici species 1748 922 genus 2801844 1 0 1 0 1750 922 species Pseudopropionibacterium propionicum 4 0 1 1 404 order Acidothermales 1643683 403 Acidothermaceae family 85032 0 1 5 3 0 20 1 2 28048 398 Acidothermus genus Acidothermus cellulolyticus 378 species 28049 1 0 0 1 295 no rank 52018 1650658 Actinobacteria bacterium IMCC26256 295 species 0 1 85011 order 119707 Streptomycetales 1 299 0 82 family 119408 Streptomycetaceae 2062 826 1 0 81 genus Streptomyces 111151 1883 1 3844 0 75 Streptomyces clavuligerus species 1383 1901 1 0 379067 species 2050 Streptomyces bingchenggensis 0 1 0 1 Streptomyces scabiei species 1414 1930 1345 species Streptomyces noursei 1971 0 1 0 1 68280 species Streptomyces violaceusniger 2229 1 0 1430 Streptomyces xinghaiensis species 1038928 75293 species Streptomyces autolyticus 1855 1 0 Streptomyces gilvosporeus species 1300 553510 0 1 0 1 193462 Streptomyces niveus species 1089 0 1 362257 Streptomyces vietnamensis species 1414 0 1 Streptomyces avermitilis species 1499 33903 species group 2261 629295 0 2 1482558 species subgroup 1053 0 1 1908 species 1053 Streptomyces globisporus 0 1 1482596 1208 species subgroup 0 1 0 1 species Streptomyces griseus 1208 1911 1 0 42684 1163 Streptomyces collinus species 1950 species Streptomyces peucetius 876 1 0 0 1 1642299 1508 species Streptomyces alfalfae 0 1 species 915 Streptomyces fulvissimus 68202 Streptomyces pactum 2414 species 68249 1 0 1169025 1092 species Streptomyces pratensis 1 0 0 1 species Streptomyces formicae 1220 1616117 1 0 1912 species Streptomyces hygroscopicus 3235 1 0 species Streptomyces albireticuli 1411 1940 Streptomyces reticuli species 1229 1926 0 1 Streptomyces venezuelae species 2110 54571 0 1 0 1 146923 species Streptomyces parvulus 1472 species Streptomyces pluripotens 1177 1355015 0 1 1 0 68192 species Streptomyces cyaneogriseus 1313 92644 1909 Streptomyces malaysiensis species 0 1 1 0 species Streptomyces puniciscabiei 1649 164348 1477431 2449 species group 2 0 0 1 1902 Streptomyces coelicolor 1310 species Streptomyces sampsonii species 1139 42239 0 1 68214 1492 species Streptomyces griseochromogenes 1 0 67267 species 1384 Streptomyces alboflavus 0 1 Streptomyces lydicus species 3407 47763 1 0 31587 no rank 2593676 24 0 1037 Streptomyces sp. CFMR 7 species 1649184 0 1 1961713 1241 Streptomyces sp. MOE7 species 0 1 Streptomyces sp. FR-008 1245 species 206662 0 1 1 0 species 1276 Streptomyces sp. SirexAA-E 862751 0 1 1984801 Streptomyces sp. CLI2509 species 927 1725411 Streptomyces sp. CdTB01 1643 species 1 0 1 0 Streptomyces sp. CCM_MD2014 1480 species 1561022 1 0 234612 Streptomyces sp. TN58 species 1040 species 847 Streptomyces sp. S8 1837283 0 1 1 0 Streptomyces sp. 4F 1276 species 1751294 0 1 species Streptomyces sp. Mg1 1294 465541 1 0 1849967 species 1278 Streptomyces sp. SAT1 0 1 species 1356 Streptomyces sp. Sge12 1972846 1090 species Streptomyces sp. Tue 6075 1661694 0 1 0 1 2094021 Streptomyces sp. WAC00288 species 1049 1 0 1262452 Streptomyces sp. 769 species 1641 0 1 1841249 1796 Streptomyces sp. RTd22 species 1964449 1373 Streptomyces sp. 3211 species 1 0 1 0 1495638 Streptomyces sp. M56 species 2082 0 1 444103 Streptomyces sp. CNQ-509 species 1380 Streptomyces sp. fd1-xmd species 1171 1812480 1 0 0 1 2059884 1550 species Streptomyces sp. CMB-StM0423 Streptomyces sp. PAMC 26508 species 1030 1265601 1 0 2135430 1485 Streptomyces sp. P3 species 1 0 1 0 Streptomyces pristinaespiralis 1302 species 38300 0 1 1361 species Streptomyces leeuwenhoekii 1437453 0 1 285473 species Streptomyces rubrolavendulae 1137 1 0 Streptomyces ambofaciens species 1035 1889 1 0 1916 species Streptomyces lividans 1258 0 1 1915 species 1645 Streptomyces lincolnensis 0 1 1783515 1141 species Streptomyces sp. S10(2016) 0 1 1907 Streptomyces glaucescens species 1057 1 0 species Streptomyces albus 2921 1888 68570 species Streptomyces albulus 1366 1 0 1 0 1935 species Streptomyces violaceoruber 1006 Streptomyces chartreusis 2094 species 1969 0 1 1 0 Streptomyces cattleya 1859 species 29303 2049881 species Streptomyces sp. XZHG99 1035 0 1 0 1 species Streptomyces xiamenensis 1363 408015 1446 species Streptomyces lavendulae 1914 0 1 2063 7431 genus Kitasatospora 86 1 0 5 species 1084 Kitasatospora albolonga 68173 1 0 2633591 2083 no rank 0 1 2018025 Kitasatospora sp. MMS16-BH015 species 2083 0 1 0 1 2019 species Kitasatospora aureofaciens 1894 2066 species Kitasatospora setae 2159 1 0 3722 order Candidatus Nanopelagicales 2039638 1 12 0 12 0 11 2162846 3710 family 622681 Candidatus Planktophila genus 3053 1 26 0 7 species Candidatus Planktophila sulfonica 235 1884904 1 0 1884905 species Candidatus Planktophila versatilis 771 0 1 1 0 1884913 Candidatus Planktophila lacus species 572 0 1 573600 351 species Candidatus Planktophila limnetica 0 1 Candidatus Planktophila dulcis species 464 1884914 0 1 Candidatus Planktophila vernalis species 634 1884907 4 0 29 1 2039639 genus 657 Candidatus Nanopelagicus 1 0 1884915 373 Candidatus Nanopelagicus hibericus species 1 0 1884634 Candidatus Nanopelagicus limnes species 84 1 0 species Candidatus Nanopelagicus abundans 171 1884916 20 1 66 0 85008 order Micromonosporales 20642 19 0 1 370 20576 Micromonosporaceae family 28056 genus Plantactinospora 4493 673534 60 1 0 4 no rank 4433 2631981 0 3 1 0 1422 species Plantactinospora sp. BB1 2071627 0 1 2108470 species 1414 Plantactinospora sp. BC1 0 1 2024580 Plantactinospora sp. KBS50 species 1597 genus Micromonospora 4430 1873 4 0 1 116 Micromonospora aurantiaca species 1527 47850 1 0 1 0 1003110 Verrucosispora maris species 1194 0 1 1593 no rank 2617518 648999 Micromonospora sp. L5 species 1593 1 0 1865 9058 genus Actinoplanes 6 0 190 1 5704 no rank 2626549 0 3 1 0 species Actinoplanes sp. SE50/110 1719 134676 649831 2266 species Actinoplanes sp. N902-109 1 0 1719 Actinoplanes sp. SE50 species 2033844 0 1 1 0 196914 Actinoplanes friuliensis 1564 species 0 1 species Actinoplanes missouriensis 1600 1866 3 1 18 0 168694 genus 2222 Salinispora Salinispora tropica species 922 168695 0 1 0 1 species Salinispora arenicola 1282 168697 1 0 84593 Verrucosispora 3 genus 13513 order Streptosporangiales 85012 16 0 53 1 family Thermomonosporaceae 2070 2012 37 1 0 3 Thermomonospora 2033 genus 2019 2 1 40 0 0 1 1993 Thermomonospora curvata species 2020 83676 family 5734 Nocardiopsaceae 7 0 89 1 83677 Thermobifida 821 genus 9 1 0 2 2021 species 812 Thermobifida fusca 0 1 Nocardiopsis 4824 genus 2013 0 1 64 4 1507 Nocardiopsis alba species 53437 0 1 2014 species 1869 Nocardiopsis dassonvillei 0 1 Nocardiopsis gilva species 1384 280236 1 0 5 0 72 1 2004 family 5656 Streptosporangiaceae 2 25 1 0 83681 genus 3160 Nonomuraea 1 0 3135 no rank 2593643 0 1 3135 species Nonomuraea sp. ATCC 55076 1909395 0 16 1 2 2000 2424 Streptosporangium genus Streptosporangium roseum species 2408 2001 0 1 414714 order 2417 Catenulisporales 4 26 1 0 0 28 1 3 Catenulisporaceae 2391 family 414877 genus Catenulispora 2363 414878 0 35 1 2 1 0 304895 species 2328 Catenulispora acidiphila 85013 4722 order Frankiales 27 1 0 7 1 40 0 6 4695 family Frankiaceae 74712 1854 4655 genus Frankia 0 1 63 5 0 1 106370 species 659 Frankia casuarinae Frankia inefficax species 1325 298654 1 0 species Frankia alni 1305 1859 0 1 no rank 1303 2632575 1 0 298653 species Frankia sp. EAN1pec 1303 0 1 173353 class Coriobacteriia 84998 30 1 889 0 84999 111717 Coriobacteriales order 289 1 0 13 15962 Atopobiaceae family 1643824 6 0 1 198 genus 1509 2767353 1 0 0 1 1509 Atopobium parvulum species 1382 0 134 1 4 14255 Olsenella genus 133925 1 0 Olsenella uli species 4598 133926 1805478 species Olsenella sp. Marseille-P2300 6752 0 1 0 1 2638792 2771 no rank 0 1 2771 Olsenella sp. oral taxon 807 species 712411 Coriobacteriaceae 95466 family 84107 1 730 0 6 89311 Collinsella genus 102106 0 52 1 2 1 0 74426 species Collinsella aerofaciens 89259 1 0 84113 no rank 3527 1531429 species 3527 Coriobacteriaceae bacterium 68-1-3 1 0 0 1 1 2 1898 Coriobacterium genus 33870 1897 Coriobacterium glomerans species 33871 1 0 16 0 754 1 1643822 60747 Eggerthellales order 15 0 12529 1 1643826 59993 family Eggerthellaceae 725 genus 84162 1 0 84163 species Cryptobacterium curtum 725 0 1 2 2 1 0 1981050 genus 1459 Phoenicibacter 1 0 1944646 Phoenicibacter massiliensis species 1457 2 0 1 21 84108 Slackia genus 5224 84110 5203 species Slackia heliotrinireducens 0 1 Adlercreutzia 5465 genus 447020 0 1 1 2 1 0 5464 Adlercreutzia equolifaciens species 446660 Gordonibacter genus 15096 644652 3 0 1 71 0 1 1841863 species 6267 Gordonibacter massiliensis 0 1 1335613 Gordonibacter urolithinfaciens species 8758 79603 genus 2871 1 0 0 1 79604 species Denitrobacterium detoxificans 2871 0 227 1 3 84111 genus 16624 Eggerthella 2982 no rank 2648737 1 0 1 0 502558 2982 Eggerthella sp. YY7918 species 0 1 Eggerthella lenta species 13415 84112 14 1 0 6 84995 1922 Rubrobacteria class 1 23 0 5 84996 1908 order Rubrobacterales family 1885 Rubrobacteraceae 84997 7 1 0 4 0 1 38 3 42255 Rubrobacter 1878 genus 1 0 Rubrobacter xylanophilus species 1248 49319 0 1 592 species Rubrobacter radiotolerans 42256 1497346 Thermoleophilia 1525 class 5 0 10 1 0 1 42 4 order 1515 Solirubrobacterales 588673 8 1 0 3 320583 1473 Conexibacteraceae family 0 59 1 2 191494 genus Conexibacter 1465 0 1 Conexibacter woesei 1406 species 191495 84992 Acidimicrobiia 1478 class 7 0 4 1 6 32 1 0 1474 order Acidimicrobiales 84993 1243 family 2448023 0 2 2 0 11 1 genus 1243 Ilumatobacter 682522 0 1 1232 Ilumatobacter coccineus species 467094 0 7 1 3 199 family Acidimicrobiaceae 84994 53634 192 genus Acidimicrobium 2 0 17 1 Acidimicrobium ferrooxidans species 175 53635 0 1 0 2 1859062 635 no rank 21 1 0 2 262406 Thermobaculum genus 635 0 1 166501 species Thermobaculum terrenum 614 1239 11985016 phylum Firmicutes 0 327 1 724 11 0 1 1 526524 Erysipelotrichia class 26774 26773 order Erysipelotrichales 526525 10 36 1 0 family 26737 Erysipelotrichaceae 128827 1 114 0 9 6028 genus Faecalibaculum 1729679 2 0 24 1 1 0 1702221 Faecalibaculum rodentium species 6004 128 1 0 3 Erysipelothrix genus 4539 1647 0 1 species 1866 Erysipelothrix larvae 1514105 species Erysipelothrix rhusiopathiae 2545 1648 0 1 2 12 1 0 191303 genus Turicibacter 5662 0 1 2638206 no rank 5650 species Turicibacter sp. H121 5650 1712675 1 0 10394 no rank 544447 0 1 1834207 species Erysipelotrichaceae bacterium I46 10394 0 1 1699 no rank 84086 0 1 endosymbiont 'TC1' of Trimyema compressum species 1699 243899 1 0 33974 no rank 1670 0 2 1670 Ndongobacter genus 1930845 0 1 16 2 0 1 species Ndongobacter massiliensis 1654 1871025 1676648 Limnochordia 1961 class 5 10 1 0 4 1 42 0 order 1951 Limnochordales 1676649 3 0 21 1 1909 family Limnochordaceae 1676650 1888 Limnochorda genus 1676651 2 1 19 0 1 0 Limnochorda pilosa species 1869 1555112 31 1 65 0 909932 class 136555 Negativicutes 78634 order Veillonellales 1843489 1288 1 0 11 10 0 1419 1 31977 77346 family Veillonellaceae 39948 Dialister genus 18164 1 36 0 2 18128 Dialister pneumosintes species 39950 1 0 Negativicoccus genus 4998 909928 0 29 1 2 1702287 Negativicoccus massiliensis species 4969 0 1 30796 Veillonella genus 29465 3 69 1 0 0 1 Veillonella rodentium 3875 species 248315 1 0 29466 Veillonella parvula species 26852 Megasphaera 21969 genus 906 2 0 2793 1 0 1 Megasphaera elsdenii 19176 species 907 1843488 22953 order Acidaminococcales 5 0 118 1 4 0 39 1 909930 22835 family Acidaminococcaceae 3 124 1 0 904 genus Acidaminococcus 22796 905 species 14266 Acidaminococcus fermentans 1 0 1 0 Acidaminococcus intestini 8406 species 187327 14 0 1 89 34903 order Selenomonadales 909929 1 12 0 4 1843490 family Sporomusaceae 3761 0 1 15 3 genus Pelosinus 3749 365348 0 1 365349 2155 Pelosinus fermentans species 1 0 2629460 no rank 1579 1 0 484770 1579 Pelosinus sp. UFO1 species 9 0 170 1 1843491 31053 family Selenomonadaceae 6 0 1 145 genus 27377 Selenomonas 970 3 0 no rank 12926 2637378 0 1 1884263 3534 Selenomonas sp. oral taxon 920 species 1 0 712538 Selenomonas sp. oral taxon 478 species 4927 713030 species 4465 Selenomonas sp. oral taxon 136 1 0 4852 Selenomonas sputigena species 69823 0 1 971 species Selenomonas ruminantium 9454 0 1 2 0 1 1 158846 3506 Megamonas genus 1 0 158847 3505 Megamonas hypermegale species 432 0 469 1 729537 Bacilli class 91061 165 0 1 6118 order 404017 Lactobacillales 186826 1 11 0 17 Leuconostocaceae 7929 family 81850 43 1 0 9 Leuconostoc genus 4519 1243 Leuconostoc gelidum 739 species 1244 1 0 1 0 species 1114 Leuconostoc mesenteroides 1245 1 0 2685106 608 no rank 0 1 species Leuconostoc sp. C2 608 979982 Leuconostoc carnosum species 344 1252 0 1 1 0 255248 Leuconostoc garlicum 286 species 1246 Leuconostoc lactis species 320 0 1 0 1 136609 Leuconostoc kimchii species 702 33964 363 species Leuconostoc citreum 0 1 1 0 genus 588 46254 Oenococcus oeni species 588 1247 0 1 6 0 13 1 46255 Weissella genus 2811 species Weissella paramesenteroides 506 1249 1 0 1 0 Weissella koreensis species 457 165096 0 1 species Weissella jogaejeotgali 426 1631871 Weissella ceti 552 species 759620 0 1 137591 Weissella cibaria species 857 0 1 186828 family 8003 Carnobacteriaceae 11 1 8 0 0 14 1 3 1470540 genus 2465 Jeotgalibaca 2621505 no rank 1619 0 1 0 1 1903686 Jeotgalibaca sp. PTS2502 species 1619 Jeotgalibaca dankookensis 832 species 708126 0 1 Carnobacterium 4270 genus 2747 5 0 7 1 0 1 species Carnobacterium maltaromaticum 1301 2751 0 1 147709 954 Carnobacterium inhibens species 2008 no rank 257487 0 2 0 1 Carnobacterium sp. 17-4 species 1084 208596 1 0 1564681 species 924 Carnobacterium sp. CP1 191769 genus Marinilactibacillus 1260 1 4 0 2 0 1 1256 no rank 2632303 1 0 1911586 species Marinilactibacillus sp. 15R 1256 no rank 915 263855 1 0 1993866 species 915 Lactobacillales bacterium 1 0 4505 1 0 49 263202 Streptococcaceae family 1300 0 3934 1 43 genus 250944 Streptococcus 1301 82348 species 875 Streptococcus pluranimalium 0 1 0 1 species 1414 Streptococcus sanguinis 1305 0 1 1606 species Streptococcus acidominimus 1326 400065 species 1031 Streptococcus merionis 1 0 0 1 1313 Streptococcus pneumoniae 3208 species 0 1 Streptococcus pantholopis species 971 1811193 28037 Streptococcus mitis species 3279 1 0 1 0 Streptococcus agalactiae 22222 species 1311 1 0 1335 Streptococcus equinus species 5016 59310 species 2113 Streptococcus macedonicus 0 1 0 1 1825069 Streptococcus marmotae 938 species 2 0 119603 2567 species group 1 0 species Streptococcus dysgalactiae 886 1334 0 1 Streptococcus equi 1681 species 1336 species Streptococcus gordonii 3517 1302 0 1 0 1 1303 Streptococcus oralis 3415 species species 799 Streptococcus halotolerans 1814128 1 0 0 1 1349 Streptococcus uberis 1187 species species Streptococcus parauberis 1522 1348 1 0 45634 species Streptococcus cristatus 1172 0 1 1307 Streptococcus suis species 28714 1 0 1 0 species Streptococcus iniae 2266 1346 1318 species Streptococcus parasanguinis 19456 0 1 0 1 315405 7338 species Streptococcus gallolyticus 0 1 1309 Streptococcus mutans species 1074 species Streptococcus pasteurianus 26680 197614 1 0 102684 species 7336 Streptococcus infantarius 1 0 671232 32460 species group 3 0 1338 Streptococcus intermedius species 2445 0 1 0 1 1328 species 23959 Streptococcus anginosus 1 0 6056 species Streptococcus constellatus 76860 0 1 Streptococcus salivarius species 28692 1304 0 1 Streptococcus pyogenes 2435 species 1314 Streptococcus thermophilus species 3304 1308 0 1 1 0 Streptococcus lutetiensis species 6842 150055 species 1076 Streptococcus pseudopneumoniae 257758 0 1 1888195 Streptococcus himalayensis species 800 0 1 7 0 21685 no rank 2608887 0 1 1319 species Streptococcus sp. 'group B' 909 1759399 species Streptococcus sp. A12 2810 0 1 1902136 species Streptococcus sp. NPS 308 783 1 0 1547 species Streptococcus sp. oral taxon 431 712633 1 0 species Streptococcus sp. I-P16 4027 1156433 0 1 1156431 species Streptococcus sp. I-G2 3961 1 0 1 0 1839799 7648 Streptococcus sp. FDAARGOS_192 species 7753 genus Lactococcus 1357 0 12 1 5 1 0 1366 Lactococcus raffinolactis species 870 1358 4474 Lactococcus lactis species 0 1 species Lactococcus garvieae 1584 1363 1 0 0 1 813 species Lactococcus piscium 1364 17 1 0 8 186827 Aerococcaceae family 6207 1375 6190 Aerococcus genus 7 1 347 0 51665 species Aerococcus urinaeequi 1229 0 1 1377 Aerococcus viridans species 732 0 1 907 Aerococcus urinae species 1376 1 0 0 1 128944 species 857 Aerococcus urinaehominis 0 1 species Aerococcus christensenii 947 87541 1171 Aerococcus sanguinicola species 119206 1 0 58 0 346 1 33958 family 65111 Lactobacillaceae 2759736 3841 genus 0 3 1 0 1597 Lactobacillus paracasei species 1315 47715 species Lactobacillus rhamnosus 989 0 1 1582 species 1537 Lactobacillus casei 0 1 2767885 genus 1812 0 2 1599 Lactobacillus sakei 1064 species 0 1 28038 748 species Lactobacillus curvatus 1 0 genus 8266 2767887 0 4 1601 993 species Lactobacillus agilis 0 1 Lactobacillus ruminis species 3226 1623 0 1 89059 species Lactobacillus acidipiscis 1185 0 1 2862 Lactobacillus salivarius species 1624 0 1 1578 Lactobacillus genus 20484 16 0 1 1165 0 1 species 863 Lactobacillus gallinarum 52242 Lactobacillus acidophilus 1607 species 1579 0 1 Lactobacillus kefiranofaciens species 967 267818 0 1 0 1 83683 species Lactobacillus amylolyticus 908 1587 Lactobacillus helveticus species 1614 1 0 1 0 species 2513 Lactobacillus johnsonii 33959 1 0 1600 Lactobacillus acetotolerans species 801 species Lactobacillus amylovorus 2801 1604 0 1 0 4 2197 no rank 2620435 Lactobacillus sp. CBA3606 597 species 2099789 1 0 0 1 1545702 Lactobacillus sp. wkB8 550 species 1 0 2108362 species Lactobacillus sp. D1501 376 674 species Lactobacillus sp. CBA3605 2099788 1 0 species Lactobacillus delbrueckii 2544 1584 0 1 1 0 1596 1662 species Lactobacillus gasseri 1 0 Lactobacillus jensenii species 842 109790 1253 3908 Pediococcus genus 6 1 11 0 1255 1367 species Pediococcus pentosaceus 0 1 0 1 114090 species Pediococcus inopinatus 577 0 1 187452 Pediococcus claussenii species 685 1 0 582 species group 1670797 1254 582 Pediococcus acidilactici species 0 1 0 1 686 Pediococcus damnosus species 51663 1 0 2767877 495 genus species Lactobacillus kunkeei 495 148814 0 1 2 0 1016 genus 2767881 0 1 53444 459 species Lactobacillus lindneri 0 1 1625 Lactobacillus sanfranciscensis species 557 1290 genus 2767889 0 2 0 1 species Lactobacillus backii 609 375175 681 species Lactobacillus coryniformis 1610 1 0 3 0 3427 genus 2767893 1138822 Lactobacillus curieae species 1438 1 0 0 1 species 1022 Lactobacillus buchneri 1581 Lactobacillus parabuchneri species 967 152331 1 0 0 3 2767842 3086 genus 1 0 60520 421 Lactobacillus paraplantarum species 0 1 species Lactobacillus pentosus 980 1589 1685 species Lactobacillus plantarum 1590 0 1 2767890 453 genus 1 0 1193095 453 species Lactobacillus hokkaidonensis 1 0 0 1 2767892 1048 genus Lactobacillus paracollinoides 1048 species 240427 0 1 0 3 2767886 1799 genus 1 0 species Lactobacillus koreensis 554 637971 Lactobacillus zymae 487 species 267363 0 1 1 0 758 Lactobacillus brevis species 1580 2767876 5299 genus 1 0 1 0 1603 species 5299 Lactobacillus amylophilus 6 0 4845 genus 2767879 0 1 1602 Lactobacillus alimentarius species 949 Lactobacillus farciminis species 946 1612 0 1 392416 species Lactobacillus crustorum 736 1 0 Lactobacillus allii 682 species 1847728 1 0 1 0 species Lactobacillus ginsenosidimutans 765 1007676 0 1 1074467 767 Lactobacillus heilongjiangensis species 3 0 2742598 genus 3696 1 0 1598 Lactobacillus reuteri species 1647 0 1 1026 species Lactobacillus mucosae 97478 1 0 1613 Lactobacillus fermentum species 1023 20 59 1 0 Enterococcaceae 46532 family 81852 1 10 0 2 genus Tetragenococcus 2507 51668 0 1 Tetragenococcus halophilus species 2497 51669 12 0 2200 1 1350 genus Enterococcus 40710 Enterococcus faecium species 16230 1352 1 0 2005703 Enterococcus wangshanyuanii 1564 species 0 1 2608891 3304 no rank 3 0 0 1 1289 Enterococcus sp. FDAARGOS_375 species 2060307 Enterococcus sp. CR-Ec1 species 1083 2057791 1 0 Enterococcus sp. FDAARGOS_163 932 species 2060306 0 1 species 1605 Enterococcus hirae 1354 0 1 53346 species Enterococcus mundtii 1397 1 0 species Enterococcus casseliflavus 865 37734 0 1 1351 species 10509 Enterococcus faecalis 0 1 1 0 53345 species Enterococcus durans 2076 0 1 species Enterococcus thailandicus 960 417368 3 1 3 0 genus 1896 Vagococcus 2737 0 1 Vagococcus teuberi species 1085 519472 Vagococcus penaei species 808 633807 1 0 2 0 1 1 33969 Melissococcus genus 1360 33970 Melissococcus plutonius species 1359 0 1 0 706 1 266 1385 order 325051 Bacillales 1 59 0 9 186820 8888 family Listeriaceae 2 0 4 1 genus Brochothrix 1250 2755 2756 1246 species Brochothrix thermosphacta 1 0 0 48 1 6 1637 Listeria genus 7579 0 1 1639 species Listeria monocytogenes 2737 species 891 Listeria innocua 1642 0 1 1 0 1640 Listeria seeligeri species 946 1670 Listeria ivanovii species 1638 1 0 1643 Listeria welshimeri species 1287 1 0 186817 Bacillaceae family 141091 1 468 0 119 0 878 1 15 10567 genus Geobacillus 129337 0 1 species Geobacillus thermodenitrificans 955 33940 1422 species 754 Geobacillus stearothermophilus 1 0 1505648 3242 species group 0 4 338 species Geobacillus kaustophilus 1462 0 1 33941 species Geobacillus thermoleovorans 1532 1 0 0 1 Geobacillus thermocatenulatus species 507 33938 Geobacillus lituanicus 865 species 169283 1 0 6 0 2642459 3258 no rank 0 1 544556 species 492 Geobacillus sp. Y412MC61 0 1 471223 Geobacillus sp. WCH70 820 species 1233873 346 species Geobacillus sp. GHH01 1 0 1 0 Geobacillus sp. C56-T3 species 507 691437 1 0 581103 Geobacillus sp. Y4.1MC1 species 790 550542 species Geobacillus sp. Y412MC52 303 0 1 129338 651 species Geobacillus subterraneus 1 0 species 829 Geobacillus genomosp. 3 1921421 1 0 2 0 2675230 genus 2322 species Bacillus oceanisediminis 1404 665099 0 1 Bacillus kochii species 918 859143 1 0 0 2 3356 genus 2675229 1478 2560 Bacillus simplex species 0 1 1 0 264697 species Bacillus muralis 796 459532 Terribacillus 1201 genus 2 1 1 0 1 0 586416 species Terribacillus aidingensis 1200 2 0 1988 genus 45667 0 1 895 species Halobacillus mangrovi 402384 1 0 Halobacillus halophilus 1093 species 1570 2 1 1 0 Parageobacillus 1070 genus 1906945 0 1 species Parageobacillus thermoglucosidasius 1069 1426 5686 genus 2675234 5 0 79885 979 Bacillus pseudofirmus species 0 1 0 1 Bacillus lehensis species 1172 300825 86665 Bacillus halodurans species 789 1 0 0 1 79880 1589 species Bacillus clausii 1 0 Bacillus krulwichiae species 1157 199441 86609 Bacillus genus 1386 3484 1 0 58 1792192 892 species group 1 0 293387 Bacillus altitudinis 892 species 0 1 0 9 species group 16095 653685 1 0 1452 species 1173 Bacillus atrophaeus 0 1 72361 Bacillus vallismortis 234 species 0 1 1129 Bacillus licheniformis species 1402 species Bacillus paralicheniformis 1388 1648923 0 1 119858 Bacillus sonorensis species 1137 0 1 5445 species subgroup 1938374 3 0 1 0 Bacillus siamensis species 774 659243 1 0 492670 Bacillus velezensis 1842 species 2829 Bacillus amyloliquefaciens species 1390 1 0 1 0 1423 species Bacillus subtilis 5589 no rank 11146 185979 0 19 792 Bacillus sp. H15-1 species 1856406 1 0 666686 Bacillus sp. 1NLA3E species 1212 0 1 species Bacillus sp. (in: Bacteria) 198 1409 0 1 1127744 370 Bacillus sp. JS species 0 1 Bacillus sp. Lzh-5 188 species 2049935 1 0 1 0 1042 Bacillus sp. X1(2014) species 1565991 0 1 1941347 Bacillus sp. 275 species 439 1 0 756828 813 Bacillus sp. WP8 species Bacillus sp. IHB B 7164 857 species 1827146 0 1 species Bacillus sp. FJAT-14266 781 1837130 1 0 98228 865 Bacillus sp. OxB-1 species 0 1 563169 Bacillus sp. SJ-10 species 502 0 1 1446792 species Bacillus sp. Pc3 390 1 0 Bacillus sp. 1s-1 species 790 2026248 1 0 1 0 2009331 451 species Bacillus sp. MD-5 0 1 1774743 species Bacillus sp. SDLI1 785 0 1 1570330 176 species Bacillus sp. BH072 1574141 Bacillus sp. YP1 species 303 1 0 192 species Bacillus sp. LM 4-2 1628753 1 0 Bacillus flexus species 1031 86664 0 1 species group 29075 86661 0 10 3 0 2750818 3699 no rank 0 1 1839798 1708 Bacillus sp. FDAARGOS_235 species species Bacillus sp. ABP14 1045 1892404 1 0 1 0 2053832 Bacillus sp. HBCD-sjtu 946 species 0 1 species Bacillus mycoides 3450 1405 0 1 Bacillus cytotoxicus 1089 species 580165 1 0 1428 Bacillus thuringiensis 8611 species Bacillus anthracis 554 species 1392 1 0 species 1129 Bacillus bombysepticus 658666 1 0 0 1 9556 species Bacillus cereus 1396 155322 species Bacillus toyonensis 987 1 0 632773 Bacillus beveridgei species 826 1 0 1398 species Bacillus coagulans 3048 0 1 Bacillus gibsonii 207 species 79881 0 1 1178537 972 species Bacillus xiamenensis 0 1 1 0 1696 Bacillus endophyticus species 135735 1 0 Bacillus methanolicus 1076 species 1471 561879 1841 species Bacillus safensis 0 1 1 0 1664069 Bacillus glycinifermentans 1477 species 0 1 843 Bacillus aryabhattai species 412384 0 1 79883 1138 Bacillus horikoshii species 33932 species 1102 Bacillus cohnii 0 1 1547283 species Bacillus weihaiensis 1058 1 0 0 1 1404 Bacillus megaterium 2592 species 0 1 1479 Bacillus smithii 768 species Bacillus cellulosilyticus 960 species 1413 0 1 1 0 1408 Bacillus pumilus 3704 species 1 0 324767 1578 species Bacillus infantis 6 0 37 1 150247 4262 genus Anoxybacillus 1 0 Anoxybacillus gonensis species 997 198467 1 0 species Anoxybacillus flavithermus 948 33934 0 2 2639704 no rank 1446 species Anoxybacillus sp. B7M1 675 1490057 0 1 771 species Anoxybacillus sp. B2M1 1490052 1 0 0 1 294699 834 Anoxybacillus amylolyticus species 3 0 1 15 3745 genus Fictibacillus 1329200 species Fictibacillus arsenicus 2811 255247 1 0 1221500 species Fictibacillus phosphorivorans 919 1 0 84406 6011 genus Virgibacillus 7 0 48 1 2 0 no rank 2165 2620237 1911587 Virgibacillus sp. 6R species 1189 1 0 species 976 Virgibacillus sp. SK37 403957 1 0 species Virgibacillus pantothenticus 1063 1473 0 1 species Virgibacillus halodenitrificans 788 1482 1 0 0 1 941 Virgibacillus phasianinus species 2017483 1006 Virgibacillus necropolis species 163877 1 0 175304 1100 genus Lentibacillus 0 2 1 2 0 1 1098 Lentibacillus amyloliquefaciens species 1472767 5 1 53 0 7113 genus Lysinibacillus 400634 1421 species 3051 Lysinibacillus sphaericus 0 1 1 0 28031 species Lysinibacillus fusiformis 1180 0 1 1145276 Lysinibacillus varians 1674 species 1 0 2636778 1155 no rank species Lysinibacillus sp. YS11 1155 2072025 1 0 genus 1236 Amphibacillus 29331 0 1 1 2 1 0 1449 1235 species Amphibacillus xylanus 0 1 1 2 1055323 genus 1071 Aeribacillus 0 1 33936 1070 species Aeribacillus pallidus 1 0 1009 genus 351195 0 1 1230341 1009 Salimicrobium jeotgali species 182709 genus Oceanobacillus 2277 2 0 1 1 182710 species 2276 Oceanobacillus iheyensis 1 0 Sporolactobacillaceae 1562 family 186821 4 1 0 2 1 0 no rank 1558 663587 85683 species [Bacillus] selenitireducens 1558 1 0 539002 7162 no rank 0 9 539742 5360 no rank 7 0 Exiguobacterium 5360 genus 33986 139 1 0 7 801 Exiguobacterium sibiricum species 332410 1 0 species Exiguobacterium antarcticum 821 132920 0 1 0 4 2644629 no rank 3599 874 Exiguobacterium sp. MH3 species 1399115 0 1 360911 562 Exiguobacterium sp. AT1b species 0 1 1224749 1021 Exiguobacterium sp. ZWU0009 species 0 1 0 1 Exiguobacterium sp. U13-1 species 1142 1849031 539738 no rank 1802 2 0 1 4 0 2 1378 Gemella genus 1802 no rank 1798 2624949 1 0 0 1 1785995 Gemella sp. oral taxon 928 species 1798 186823 7900 family Alicyclobacillaceae 9 59 1 0 genus 2337 Alicyclobacillus 29330 0 43 1 2 405212 species Alicyclobacillus acidocaldarius 2294 1 0 genus 3644 Tumebacillus 432330 3 0 54 1 1214604 Tumebacillus algifaecis 1334 species 1 0 1 0 Tumebacillus avium 2256 species 1903704 1129704 genus 1860 Kyrpidia 0 1 61 3 1 0 859 species Kyrpidia sp. EA-1 2055160 0 1 Kyrpidia tusciae species 940 33943 4 0 1 11 family 1470 Thermoactinomycetaceae 186824 1408 genus Novibacillus 1677050 0 1 62 2 1 0 Novibacillus thermophilus species 1346 1471761 292635 genus Laceyella 51 0 1 1 58 0 27 186818 Planococcaceae family 20617 157226 genus 1492 Jeotgalibacillus 1 1 0 2 1 0 species Jeotgalibacillus malaysiensis 1491 1508404 0 1 2 2 Rummeliibacillus genus 885 648802 1 0 241244 883 Rummeliibacillus stabekisii species 5 16 1 0 5322 genus Sporosarcina 1569 2580 Sporosarcina ureae species 1571 1 0 0 2 2647733 2115 no rank 1 0 1930546 Sporosarcina sp. P37 1051 species species 1064 Sporosarcina sp. P33 1930764 1 0 0 1 1476 species Sporosarcina psychrophila 611 12 0 1 123 9164 genus Planococcus 1372 0 1 Planococcus halocryophilus 728 species 1215089 1374 species Planococcus kocurii 837 0 1 0 1 species 834 Planococcus antarcticus 161360 0 1 species Planococcus faecalis 859 1598147 192421 1625 Planococcus maritimus species 1 0 1038856 Planococcus plakortidis species 743 1 0 526 species Planococcus sp. L10.15 1302659 0 1 Planococcus rifietoensis 812 species 200991 1 0 Planococcus donghaensis 680 species 414778 1 0 2 0 1397 no rank 2662419 1 0 1526927 Planococcus sp. PAMC 21323 535 species 862 species Planococcus sp. MB-3u-03 2058136 1 0 2 0 2 1 1649 Kurthia genus 1227 no rank 1225 2644826 0 1 0 1 1750719 species 1225 Kurthia sp. 11kri321 3 1 9 0 648800 genus 2469 Solibacillus species Solibacillus silvestris 1479 76853 0 1 1 0 2637870 981 no rank 0 1 Solibacillus sp. R5-41 species 981 2048654 41977 Staphylococcaceae family 90964 0 1437 1 40 0 1 genus 1252 45669 1 0 407035 species 1252 Salinicoccus halodurans 1279 genus Staphylococcus 35821 33 657 1 0 819 Staphylococcus carnosus species 1281 1 0 46127 Staphylococcus felis species 874 1 0 0 1 1139 species Staphylococcus cohnii 29382 1290 Staphylococcus hominis species 897 1 0 0 1 308354 1071 Staphylococcus simiae species 246432 Staphylococcus equorum species 1287 1 0 1 0 718 species Staphylococcus agnetis 985762 709 Staphylococcus lutrae species 155085 0 1 species 853 Staphylococcus lugdunensis 28035 0 1 283734 Staphylococcus pseudintermedius 1352 species 0 1 214473 species 963 Staphylococcus nepalensis 1 0 70258 species Staphylococcus piscifermentans 996 1 0 1 0 943 Staphylococcus sciuri species 1296 61015 Staphylococcus succinus 895 species 0 1 29388 Staphylococcus capitis species 727 1 0 0 1 1292 Staphylococcus warneri 808 species 1 0 170573 species Staphylococcus pettenkoferi 779 1284 775 Staphylococcus hyicus species 1 0 0 1 3970 species Staphylococcus aureus 1280 1294 species Staphylococcus muscae 453 1 0 0 1 892 no rank 91994 0 1 Staphylococcus sp. AntiMn-1 species 892 1715860 1295 Staphylococcus schleiferi species 1095 1 0 1 0 Staphylococcus kloosii species 662 29384 Staphylococcus argenteus species 920 985002 0 1 species 1337 Staphylococcus condimenti 70255 1 0 Staphylococcus xylosus 1228 species 1288 0 1 species 801 Staphylococcus stepanovicii 643214 0 1 1 0 1282 species 1565 Staphylococcus epidermidis 1283 species 1566 Staphylococcus haemolyticus 0 1 species Staphylococcus pasteuri 2095 45972 1 0 Staphylococcus simulans species 1052 1286 0 1 0 1 species Staphylococcus saprophyticus 923 29385 1 0 2005363 genus 707 0 1 1849491 Auricoccus indicus 707 species 1 1 0 4 genus 2760 Macrococcus 69965 1855823 species 834 Macrococcus canis 0 1 794 no rank 2619255 0 1 0 1 Macrococcus sp. IME1552 species 794 1898474 69966 Macrococcus caseolyticus species 1131 0 1 family 93678 Paenibacillaceae 186822 0 215 1 46 3 0 no rank 2920 85151 3 0 11 1 55079 genus 2920 Aneurinibacillus Aneurinibacillus soli species 1262 1500254 1 0 1 0 no rank 1647 2642329 1450761 1647 Aneurinibacillus sp. XH2 species 0 1 genus 5237 Brevibacillus 55080 1 30 0 4 54913 Brevibacillus formosus species 1003 0 1 1 0 Brevibacillus brevis species 2048 1393 1465 Brevibacillus laterosporus 2156 species 0 1 36 1 1301 0 genus 82894 Paenibacillus 44249 0 1 1178515 Paenibacillus swuensis species 1069 1 0 162209 Paenibacillus naphthalenovorans species 1764 1464 Paenibacillus larvae species 1254 0 1 44251 Paenibacillus durus 3458 species 1 0 0 1 species 2280 Paenibacillus yonginensis 1462996 365617 2150 species Paenibacillus sabinae 0 1 1126833 species Paenibacillus beijingensis 1698 0 1 1763538 Paenibacillus crassostreae species 1301 0 1 414771 3601 Paenibacillus donghaensis species 1 0 species Paenibacillus bovis 2280 1616788 0 1 1 0 189425 3515 Paenibacillus graminis species 3939 species group 2044880 1 0 0 1 3939 species Paenibacillus riograndensis 483937 Paenibacillus mucilaginosus species 3937 61624 0 1 0 1 1870820 species Paenibacillus ihbetae 2276 159743 1323 species Paenibacillus terrae 0 1 189426 species Paenibacillus odorifer 1422 1 0 28456 no rank 185978 0 13 0 1 1566358 species 851 Paenibacillus sp. IHBB 10380 1 0 1536772 species 3678 Paenibacillus sp. FSL R7-0273 1 0 1536770 Paenibacillus sp. FSL R5-0345 species 1435 Paenibacillus sp. FSL H7-0737 1462 species 1536775 0 1 species Paenibacillus sp. lzh-N1 1285 2069255 1 0 0 1 324057 species Paenibacillus sp. JDR-2 2152 1695218 Paenibacillus sp. 32O-W 1730 species 0 1 1 0 1536769 species 3489 Paenibacillus sp. FSL P4-0081 0 1 species Paenibacillus sp. Y412MC10 1958 481743 1536771 Paenibacillus sp. FSL R5-0912 species 3273 0 1 1 0 species Paenibacillus sp. FSL R7-0331 2544 1536773 1 0 Paenibacillus sp. FSL H7-0357 species 2923 1536774 species 1676 Paenibacillus sp. BIHB4019 1870819 0 1 169760 species Paenibacillus stellifer 2917 0 1 1 0 Paenibacillus peoriae species 1284 59893 Paenibacillus borealis 3507 species 160799 1 0 0 1 species Paenibacillus polymyxa 4983 1406 Paenibacillus xylanexedens species 1719 528191 0 1 species 1460 Paenibacillus kribbensis 172713 0 1 2 16 1 0 76632 genus 2412 Thermobacillus 1 0 377615 species Thermobacillus composti 2396 222 467 1 0 186801 class 11056162 Clostridia 2 1 0 11 53433 order Halanaerobiales 5305 2 1 0 4 2142 family Halobacteroidaceae 53434 Halobacteroides genus 1128 42417 1 1 0 2 Halobacteroides halobius species 1127 42422 0 1 genus 1012 28186 0 1 0 1 28187 Acetohalobium arabaticum species 1012 1 7 0 6 family 3161 Halanaerobiaceae 972 2330 Halanaerobium 2186 genus 3 0 28 1 Halanaerobium hydrogeniformans 1091 species 656519 0 1 0 1 Halanaerobium praevalens species 1067 2331 968 genus Halothermothrix 32636 2 0 17 1 0 1 species Halothermothrix orenii 951 31909 165 1 20581 0 186802 Clostridiales order 11014075 186807 38630 family Peptococcaceae 1 432 0 29 4 0 1 75 4438 genus Desulfosporosinus 79206 1 0 Desulfosporosinus orientis 1622 species 1563 1 0 79209 Desulfosporosinus meridiei species 1374 species Desulfosporosinus acidiphilus 1367 885581 1 0 1 1 0 2 Thermincola genus 1571 278993 863643 species Thermincola potens 1570 1 0 60 1 0 5 9064 genus Desulfitobacterium 36853 species Desulfitobacterium dehalogenans 1597 36854 0 1 Desulfitobacterium hafniense species 4283 49338 1 0 233055 species Desulfitobacterium dichloroeliminans 2044 1 0 Desulfitobacterium metallireducens species 1080 142877 0 1 2282742 genus 1458 1 0 1 0 58138 Desulfotomaculum acetoxidans species 1458 1397 Syntrophobotulus genus 51196 1 7 0 2 1 0 51197 1390 species Syntrophobotulus glycolicus 56112 Dehalobacter genus 6478 0 1 49 4 2 0 4345 no rank 2635733 1 0 2130 species Dehalobacter sp. DCA 1147129 Dehalobacter sp. CF species 2215 1131462 1 0 55583 species Dehalobacter restrictus 2084 1 0 Dehalobacterium genus 3251 51514 2 1 9 0 1 0 51515 Dehalobacterium formicoaceticum species 3242 0 1 89 5 1562 Desulfotomaculum genus 7120 Desulfotomaculum reducens species 1002 59610 0 1 0 1 1564 Desulfotomaculum ruminis species 2262 1833852 Desulfotomaculum ferrireducens species 2172 1 0 1565 Desulfotomaculum nigrificans species 1595 0 1 2282740 2154 genus 1 0 0 1 102134 2154 Desulfotomaculum gibsoniae species 2 1 5 0 471826 genus 1267 Candidatus Desulforudis 0 1 471827 species Candidatus Desulforudis audaxviator 1262 186806 21463 family Eubacteriaceae 5 0 1 17 Eubacterium 19570 genus 1730 2 0 1 1379 1 0 1736 Eubacterium limosum 18191 species genus Acetobacterium 1876 33951 2 0 2 1 1874 species Acetobacterium woodii 33952 1 0 2304686 family 47245 0 12 0 1 3103 genus 2304691 species [Clostridium] stercorarium 3103 1510 0 1 2304692 9080 genus 0 3 1677857 species Herbivorax saccincola 2144 1 0 288965 species [Clostridium] clariflavum 4064 1 0 2872 species Ruminiclostridium thermocellum 1515 0 1 1 0 2304693 3202 genus 1 0 84032 species [Clostridium] thermosuccinogenes 3202 2305130 no rank 22198 1 0 Ruminiclostridium sp. KB18 species 22198 1834198 1 0 1637257 genus 3217 Mageeibacillus 2 1 1 0 884684 Mageeibacillus indolicus species 3216 1 0 236752 genus 1654 Fastidiosipila 0 19 1 2 1 0 1635 Fastidiosipila sanguinis species 236753 0 1 465 2 4791 genus Ruminiclostridium 1508657 0 1 1521 species [Clostridium] cellulolyticum 4326 186803 Lachnospiraceae 7345281 family 0 4995 1 27 2 7 1 0 genus Herbinix 9430 1663717 1 0 species Herbinix luporum 9423 1679721 2 2 1 0 698776 5815 genus Cellulosilyticum 0 1 species Cellulosilyticum lentocellum 5813 29360 genus 58584 2719231 0 1 [Clostridium] saccharolyticum species 58584 84030 1 0 Anaerotignum 5714 genus 2039240 0 19 1 2 28446 Anaerotignum propionicum species 5695 1 0 1 0 28050 390860 genus 1 0 39485 390860 species [Eubacterium] eligens 841 Roseburia genus 3660372 2 0 42 1 0 1 Roseburia hominis species 3660330 301301 1 0 genus 161356 2569097 [Eubacterium] hallii 161356 species 39488 0 1 2 0 2400838 no rank 186928 2383623 [Eubacterium] rectale species 39491 0 1 1 0 17215 Lachnospiraceae bacterium oral taxon 500 species 712991 233315 Anaerostipes genus 207244 0 1 221 2 649756 species Anaerostipes hadrus 233094 0 1 2719313 genus 125528 1 0 0 1 [Clostridium] bolteae species 125528 208479 0 571 1 4 1506553 genus 121100 Lachnoclostridium 1 0 66219 12328 Lachnoclostridium phytofermentans species 2608895 no rank 43277 1 0 43277 Lachnoclostridium sp. YL32 species 1834196 1 0 64924 species Lachnoclostridium phocaeense 1871021 0 1 3 45 1 0 Butyrivibrio genus 38961 830 1 0 185008 19082 species Butyrivibrio hungatei 19834 species Butyrivibrio proteoclasticus 43305 1 0 genus 128413 Blautia 572511 3 0 176 1 2648079 46041 no rank 0 1 0 1 1796616 species Blautia sp. YL58 46041 1 0 1322 Blautia hansenii species 82196 3 0 1 137 990719 family 45147 Christensenellaceae 2 852 1 0 990721 45010 genus Christensenella 0 1 1805714 species 44158 Christensenella massiliensis 543349 family 3126 Symbiobacteriaceae 19 1 0 3 2733 3107 Symbiobacterium genus 21 1 0 2 species 3086 Symbiobacterium thermophilum 2734 1 0 0 10 538999 166675 no rank 1 0 76928 genus 2717089 0 1 2086584 species 76928 Mordavella sp. Marseille-P3756 543314 6085 family Clostridiales Family XIII. Incertae Sedis 4 1 9 0 1 0 species [Eubacterium] sulci 3385 143393 86331 Mogibacterium 2691 genus 0 1 16 2 0 1 114527 species Mogibacterium diversum 2675 2 0 934 1 1392389 81254 genus Intestinimonas 0 1 1297617 80320 species Intestinimonas butyriciproducens 539000 2408 family Clostridiales Family XVII. Incertae Sedis 3 1 11 0 73918 genus Thermaerobacter 2397 2 0 10 1 1 0 73919 species Thermaerobacter marianensis 2387 31984 family 3643 Heliobacteriaceae 3 24 1 0 2697 genus Heliobacterium 3619 0 1 82 2 Heliobacterium modesticaldum 3537 species 35701 0 1 0 996 1 11 family 121124 Peptostreptococcaceae 186804 1411023 1718 no rank 1 0 0 1 Peptostreptococcaceae bacterium oral taxon 929 species 1718 2081703 0 1 1 2 Peptoclostridium 3603 genus 1481960 0 1 species Peptoclostridium acidaminophilum 3602 1731 2185 genus Filifactor 44259 2 0 4 1 species Filifactor alocis 2181 143361 1 0 186831 genus 2170 Acetoanaerobium 1 1 0 2 1511 species 2169 Acetoanaerobium sticklandii 0 1 genus 2905 1849828 1 0 0 1 2905 Paeniclostridium sordellii species 1505 1870884 Clostridioides 107547 genus 2 1 393 0 0 1 Clostridioides difficile species 107154 1496 1109 1 0 13 541000 3024011 family Ruminococcaceae 0 1 11290 no rank 2305133 1572656 Ruminococcaceae bacterium CPB6 species 11290 1 0 Faecalibacterium genus 2820087 216851 2 1 3880 0 1 0 853 species Faecalibacterium prausnitzii 2816207 118 1 0 2 Flavonifractor 98849 genus 946234 1 0 species 98731 Flavonifractor plautii 292800 0 1 552397 4705 no rank 29343 [Clostridium] cellulosi 4705 species 1 0 2 1 15 0 253238 11683 genus Ethanoligenens species Ethanoligenens harbinense 11668 253239 1 0 1263 Ruminococcus genus 76282 3 0 161 1 1 0 1160721 Ruminococcus bicirculans 63447 species 12674 species Ruminococcus albus 1264 0 1 0 1 1890281 genus Herbivorax 6 41 0 1 933 31979 155458 Clostridiaceae family 390805 3366 Geosporobacter genus 0 18 1 2 0 1 1424294 species Geosporobacter ferrireducens 3348 Candidatus Arthromitus genus 3199 49082 1 65 0 4 0 3 2638829 3134 no rank 1 0 1508644 species 1057 Candidatus Arthromitus sp. SFB-mouse-NL 1041504 1117 Candidatus Arthromitus sp. SFB-rat-Yit species 0 1 49118 960 Candidatus Arthromitus sp. SFB-mouse species 1 0 genus Mordavella 355 1981033 1 0 114627 genus 3465 Alkaliphilus 0 1 25 3 461876 Alkaliphilus oremlandii species 1398 0 1 208226 2042 Alkaliphilus metalliredigens species 0 1 1 1160 0 30 genus 144140 Clostridium 1485 1 0 6584 species Clostridium butyricum 1492 1 0 Clostridium taeniosporum 2678 species 394958 Clostridium carboxidivorans species 3569 217159 1 0 species 6571 Clostridium beijerinckii 1520 0 1 1493 4204 Clostridium cellulovorans species 1 0 1 0 2293 species Clostridium novyi 1542 0 1 species Clostridium sporogenes 2146 1509 169679 species Clostridium saccharobutylicum 4758 0 1 1488 species Clostridium acetobutylicum 2733 0 1 0 1 Clostridium baratii species 5012 1561 0 2 26811 no rank 2614128 22534 Clostridium sp. SY8519 species 1042156 0 1 755731 Clostridium sp. BNL1100 species 4277 0 1 0 1 Clostridium argentinense species 3397 29341 species Clostridium tyrobutyricum 2090 1519 1 0 0 1 Clostridium ljungdahlii 2695 species 1538 0 1 1534 3987 Clostridium kluyveri species 0 1 238834 2506 species Clostridium estertheticum species Clostridium botulinum 16083 1491 0 1 species Clostridium bornimense 2963 1216932 1 0 1501 6087 Clostridium pasteurianum species 0 1 species Clostridium formicaceticum 2075 1497 0 1 1494 species 2749 Clostridium cochlearium 1 0 0 1 Clostridium perfringens 6818 species 1502 0 1 36745 5994 species Clostridium saccharoperbutylacetonicum 2705 species Clostridium autoethanogenum 84023 0 1 1 0 Clostridium scatologenes 3726 species 1548 84022 2315 Clostridium aceticum species 0 1 1 0 species 3553 Clostridium chauvoei 46867 0 1 1513 Clostridium tetani species 5878 4 0 3 1 68298 family 1405 Syntrophomonadaceae 1 0 genus 720 862 863 720 species Syntrophomonas wolfei 0 1 682 Syntrophothermus genus 129001 0 1 1 2 species Syntrophothermus lipocalidus 681 86170 0 1 216572 20286 Oscillospiraceae family 4 1 0 3 20282 genus Oscillibacter 459786 54 1 0 2 0 1 Oscillibacter valericigenes 20228 species 351091 order 33080 Thermoanaerobacterales 68295 0 1 67 38 227387 471 family 1 0 471 genus 227388 0 1 184064 species 471 Thermodesulfobium narugense 1 0 543372 family 1325 Thermoanaerobacterales Family IV. Incertae Sedis 1 6 0 3 0 1 22 2 Mahella genus 1319 252965 1 0 252966 1297 species Mahella australiensis Thermoanaerobacteraceae family 17146 186814 20 0 52 1 42857 2774 no rank 0 4 44260 genus Moorella 1727 0 4 1 2 0 1 1525 1723 species Moorella thermoacetica 42837 genus Ammonifex 1047 0 1 10 2 42838 1037 species Ammonifex degensii 0 1 5 1 0 2 129957 Carboxydothermus 1114 genus Carboxydothermus hydrogenoformans species 1109 129958 0 1 249529 1016 Caldanaerobacter genus 0 9 1 2 Caldanaerobacter subterraneus species 1007 911092 0 1 Thermacetogenium genus 1245 140458 2 21 1 0 1 0 85874 Thermacetogenium phaeum species 1224 0 1 662 9 1754 10945 genus Thermoanaerobacter 1 0 Thermoanaerobacter kivui species 1056 2325 Thermoanaerobacter brockii 1245 species 29323 1 0 1669 species Thermoanaerobacter italicus 108150 1 0 0 1 1245 Thermoanaerobacter pseudethanolicus species 496866 0 1 species Thermoanaerobacter mathranii 1453 583357 46354 species 892 Thermoanaerobacter wiegelii 0 1 0 2 2723 no rank 2636821 573062 Thermoanaerobacter sp. X513 species 1385 1 0 Thermoanaerobacter sp. X514 species 1338 399726 0 1 14071 family Thermoanaerobacterales Family III. Incertae Sedis 543371 13 0 21 1 3 1 44 0 4545 genus Thermoanaerobacterium 28895 species 1671 Thermoanaerobacterium xylanolyticum 29329 0 1 1517 Thermoanaerobacterium thermosaccharolyticum 2830 species 0 1 44000 Caldicellulosiruptor genus 9505 9 0 201 1 species 1578 Caldicellulosiruptor obsidiansis 717609 0 1 55205 Caldicellulosiruptor owensensis species 1008 0 1 0 1 1060 Caldicellulosiruptor kristjanssonii species 52765 1 0 species 1381 Caldicellulosiruptor bescii 31899 1 0 44001 Caldicellulosiruptor saccharolyticus species 998 0 1 413888 species 1016 Caldicellulosiruptor hydrothermalis 1 0 52766 Caldicellulosiruptor lactoaceticus 1064 species 0 1 413889 species Caldicellulosiruptor kronotskyensis 1199 7 1 0 4 485256 Natranaerobiales 1075 order 485255 1068 Natranaerobiaceae family 3 3 1 0 genus Natranaerobius 1065 375928 58 1 0 2 375929 species 1007 Natranaerobius thermophilus 0 1 2770089 order 2160 0 3 0 1 1268 family 2770092 0 1 499228 1268 genus Tepidanaerobacter acetatoxydans species 1268 499229 0 1 2770093 family 892 2 0 2 10 1 0 Thermosediminibacter genus 892 291988 species 882 Thermosediminibacter oceani 291990 1 0 1 14 0 19 1737404 30331 class Tissierellia no rank 941 1737407 2 0 genus Ezakiella 941 1582879 2 1 7 0 1 0 Ezakiella massiliensis species 934 1852374 16 0 1 543 order 29376 Tissierellales 1737405 1570339 family 27069 Peptoniphilaceae 12 1 6852 0 1 6 0 2 Peptoniphilus genus 1362 162289 2637196 1356 no rank 0 1 0 1 species Peptoniphilus sp. ING2-D1G 1356 1912856 2 0 1 6 150022 genus 2597 Finegoldia 1 0 1260 species Finegoldia magna 2591 0 9 1 3 165779 2812 Anaerococcus genus 0 1 Anaerococcus mediterraneensis 1215 species 1870984 Anaerococcus prevotii species 1588 33034 0 1 0 10 1 2 Parvimonas genus 1952 543311 33033 Parvimonas micra species 1942 1 0 1161127 11494 genus Murdochiella 0 5 1 2 1852373 11489 species Murdochiella vaginalis 1 0 3 14 1 0 1764 family Gottschalkiaceae 2042895 0 1 1 2 1505664 1750 Gottschalkia genus 1 0 1556 species Gottschalkia acidurici 1749 clade 75445 1798711 0 150 150 0 1 26 phylum Cyanobacteria 75445 1117 307596 class Gloeobacteria 2512 6 0 1 20 0 90 1 5 307595 Gloeobacterales order 2492 0 1 15 4 2402 Gloeobacteraceae family 1890422 3 1 20 0 33071 Gloeobacter genus 2387 0 1 Gloeobacter violaceus 1270 species 33072 Gloeobacter kilaueensis species 1097 1416614 0 1 45 0 18181 subclass 1301283 21 51 1 0 1150 6576 order Oscillatoriales 1892254 Oscillatoriaceae family 1810 6 0 1 23 0 1 6 3 1158 genus Oscillatoria 997 0 1 118323 387 Oscillatoria acuminata species 482564 Oscillatoria nigro-viridis species 604 1 0 2 0 1 7 1155738 genus Moorea 790 1 0 783 species Moorea producens 1155739 3 0 3 1 family Coleofasciculaceae 1517 1892251 1 3 0 2 63132 genus 1514 Geitlerinema 1 0 2648775 no rank 1511 0 1 1173025 Geitlerinema sp. PCC 7407 species 1511 0 3 1 3 693 family Cyanothecaceae 1892249 43988 genus Cyanothece 690 2 33 1 0 0 1 no rank 657 2649277 1 0 395961 Cyanothece sp. PCC 7425 species 657 1892252 family 1943 Microcoleaceae 1 1 0 5 1 1 0 2 1205 genus Trichodesmium 780 Trichodesmium erythraeum species 779 1206 1 0 2 1 0 2 genus Microcoleus 1162 44471 1 0 no rank 1160 2642155 0 1 species Microcoleus sp. PCC 7113 1160 1173027 1892255 Gomontiellaceae family 562 3 0 1 9 genus 553 Crinalium 241421 2 1 0 2 241425 Crinalium epipsammum 551 species 0 1 24 1 6 0 1118 Chroococcales order 11605 9 2 1 0 1890450 4669 family Aphanothecaceae 28070 1816 genus 2 0 675 species 2546359 0 1 strain Cyanothece sp. PCC 7822 675 497965 1 0 0 1 2546356 species 1141 65393 strain Cyanothece sp. PCC 7424 1141 0 1 1453359 245 genus 1 0 713887 species 245 Candidatus Atelocyanobacterium thalassa 0 1 0 2 92682 no rank 353 76023 353 genus Halothece 0 1 4 2 0 1 349 no rank 2632878 Halothece sp. PCC 7418 349 species 65093 1 0 1 0 263510 718 genus 0 1 2546360 species 718 strain Cyanothece sp. ATCC 51142 718 43989 0 1 2 0 2546365 1535 genus 2 0 species 1535 2546366 1 0 Cyanothece sp. PCC 8802 736 strain 395962 41431 strain Cyanothece sp. PCC 8801 799 1 0 3 0 1 2 1890452 family Cyanobacteriaceae 1581 102234 1579 genus Cyanobacterium 0 1 7 2 1572 species Cyanobacterium aponinum 379064 0 1 1890464 Chroococcaceae family 3796 7 37 1 0 0 18 1 3 669357 2423 genus Geminocystis 0 2 2625037 no rank 2405 Geminocystis sp. NIES-3709 species 1325 1617448 1 0 1615909 1080 species Geminocystis sp. NIES-3708 0 1 Gloeocapsa genus 711 102231 2 0 2 1 0 1 2623012 no rank 709 709 species Gloeocapsa sp. PCC 7428 1173026 1 0 268175 625 genus 1 0 0 1 2648896 625 no rank 2005460 625 species Chondrocystis sp. NIES-4102 1 0 11 1 0 4 1890449 family Microcystaceae 1553 1542 Microcystis genus 1125 6 1 0 3 1051 Microcystis aeruginosa species 1126 0 1 2643300 485 no rank 1 0 1 0 species Microcystis sp. MC19 485 1967666 1890424 order Synechococcales 33583 56 1 336 0 1890438 family Leptolyngbyaceae 4971 1 49 0 6 47251 4922 genus Leptolyngbya 5 0 9 1 0 1 1184 species Leptolyngbya boryana 1060 no rank 3853 2650499 3 0 668 species Leptolyngbya sp. NIES-3755 1752064 1 0 0 1 Leptolyngbya sp. O-77 1147 species 1080068 111781 species Leptolyngbya sp. PCC 7376 2038 0 1 1 12 0 3 1890436 Pseudanabaenaceae family 316 2 0 18 1 1152 Pseudanabaena 304 genus no rank 286 2593292 0 1 82654 species Pseudanabaena sp. PCC 7367 286 1 0 2 1 2 0 1890429 1077 Acaryochloridaceae family 0 1 155977 1075 genus 1 0 155978 Acaryochloris marina species 1075 2 0 2303730 family 1296 0 7 1 2 Halomicronema genus 1296 170610 1209493 1289 Halomicronema hongdechloris species 1 0 1 4 0 5 1890428 family 1643 Merismopediaceae 4 0 1 35 1639 genus Synechocystis 1142 0 3 no rank 1604 2640012 0 1 Synechocystis sp. IPPAS B-1465 species 599 2116702 0 1 1148 Synechocystis sp. PCC 6803 species 599 0 1 1147 406 Synechocystis sp. PCC 6714 species 65 1 0 33 20285 family Synechococcaceae 1890426 286 1 0 26 1129 genus Synechococcus 15487 0 23 no rank 14058 2626047 0 1 species Synechococcus sp. KORDI-100 675 1280380 0 1 species Synechococcus sp. PCC 8807 254 195248 0 1 374982 species Synechococcus sp. PCC 73109 209 Synechococcus sp. PCC 6312 species 272 195253 1 0 1 0 579 species Synechococcus sp. CC9902 316279 Synechococcus sp. KORDI-49 species 738 585423 1 0 0 1 316278 species 652 Synechococcus sp. RCC307 1 0 species Synechococcus sp. PCC 7502 383 1173263 species Synechococcus sp. SynAce01 804 1916956 0 1 678 Synechococcus sp. WH 7803 species 32051 1 0 1 0 84588 947 species Synechococcus sp. WH 8102 64471 Synechococcus sp. CC9311 species 552 0 1 0 1 Synechococcus sp. PCC 7002 species 245 32049 110662 Synechococcus sp. CC9605 species 663 0 1 0 1 species 790 Synechococcus sp. WH 8109 166314 1827144 species Synechococcus sp. NIES-970 499 1 0 374981 Synechococcus sp. PCC 7003 species 342 1 0 321327 1756 species Synechococcus sp. JA-3-3Ab 1 0 0 1 Synechococcus sp. UTEX 2973 388 species 1350461 29410 Synechococcus sp. WH 8103 species 826 1 0 1 0 321332 species Synechococcus sp. JA-2-3B'a(2-13) 714 Synechococcus sp. PCC 7117 species 221 195498 0 1 871 Synechococcus sp. KORDI-52 species 585425 0 1 33070 species Synechococcus lividus 638 0 1 32046 Synechococcus elongatus species 505 1 0 genus Dactylococcopsis 342 13034 0 1 4 2 Dactylococcopsis salina 338 species 292566 0 1 1 79 0 3 genus 3970 Cyanobium 167375 0 1 59930 1828 species Cyanobium gracile 0 1 2627006 2063 no rank 1 0 2063 species Cyanobium sp. NIES-981 1851505 1 0 146785 421 genus 1 0 146786 Thermosynechococcus elongatus species 421 4 0 3659 family 1213 1 1 0 4 genus Prochlorococcus 3659 1218 1 0 2825 species Prochlorococcus marinus 1219 0 2 2627481 833 no rank species Prochlorococcus sp. MIT 0801 347 1501269 1 0 1 0 1501268 486 species Prochlorococcus sp. MIT 0604 473 no rank 1983111 1 0 cyanobacterium endosymbiont of Epithemia turgida species 473 718217 1 0 0 3 1890505 order 1029 0 19 1 3 1890528 family Chroococcidiopsidaceae 1029 2 1 0 2 1010 genus Chroococcidiopsis 54298 54299 Chroococcidiopsis thermalis species 1008 1 0 7 4 1 0 52604 Pleurocapsales order 1893 2 0 1 1 family 673 Hyellaceae 1890500 1 0 672 genus 44474 54308 species Pleurocapsa minor 672 1 0 1890498 1216 family Dermocarpellaceae 4 6 1 0 3 3 1 0 102115 genus Stanieria 1210 1 0 no rank 732 2642663 species Stanieria sp. NIES-3757 732 1807358 1 0 0 1 102116 species 475 Stanieria cyanosphaera 1161 Nostocales order 17748 1 42 0 31 no rank 364 1219117 1 0 Nostocales cyanobacterium HT-58-2 364 species 1940762 1 0 family Rivulariaceae 1514 1185 0 1 9 3 1505 Rivularia genus 373984 10 1 0 2 1 0 1495 no rank 2676603 species 1495 Rivularia sp. PCC 7116 373994 0 1 1 0 1892263 477 family 1 0 genus 477 1190 477 no rank 494603 1 0 1 0 1752063 477 species Fischerella sp. NIES-3754 8 0 2661849 5127 family genus Calothrix 5127 1186 0 1 20 8 0 6 4407 no rank 2619626 species Calothrix sp. NIES-4071 1127 2005469 0 1 1 0 Calothrix sp. NIES-2098 species 652 1954171 99598 460 Calothrix sp. PCC 7507 species 0 1 2005462 627 species Calothrix sp. NIES-3974 1 0 2005461 species 1133 Calothrix sp. NIES-4101 1 0 1 0 1337936 Calothrix sp. 336/3 species 408 0 1 32054 Calothrix parietina 700 species 1162 10224 family Nostocaceae 0 1 40 17 10 0 60 1 genus 6345 Nostoc 1177 Nostoc flagelliforme species 1106 1306274 1 0 485 Nostoc punctiforme species 272131 1 0 4694 no rank 2593658 7 0 1 0 1261031 693 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 0 103690 species 807 Nostoc sp. PCC 7120 1618022 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 651 0 1 0 1 Nostoc sp. CENA543 species 646 1869241 species 542 Nostoc sp. PCC 7107 317936 0 1 1 0 species Nostoc sp. NIES-3756 863 1751286 492 Nostoc sp. PCC 7524 species 28072 0 1 genus 1630 264688 0 2 0 1 Trichormus variabilis species 817 264691 0 1 species 813 Trichormus azollae 1164 5 1 0 4 Anabaena 2209 genus 1163 Anabaena cylindrica species 706 1165 0 1 2619674 no rank 1498 0 2 46234 species Anabaena sp. 90 934 0 1 species 564 Anabaena sp. WA102 1647413 1 0 46 0 1 1 17356 phylum Chloroflexi 200795 7 0 2969 class 292625 2969 Anaerolineales order 292629 1 5 0 7 6 0 1 19 292628 family 2964 Anaerolineaceae 2 0 1 2 233189 genus 1597 Anaerolinea 1 0 1595 Anaerolinea thermophila species 167964 2 1 1 0 Brevefilum genus 408 2019482 1986204 species 407 Brevefilum fermentans 0 1 1324991 no rank 940 1 0 1889813 Anaerolineaceae bacterium oral taxon 439 species 940 1 0 class Ardenticatenia 2849 1382928 5 0 1 52 1382929 order Ardenticatenales 2797 0 21 1 4 3 1 30 0 family 2776 Ardenticatenaceae 1382930 2746 genus Candidatus Promineofilum 1988031 2 0 7 1 1806508 Candidatus Promineofilum breve species 2739 0 1 Caldilineae 1508 class 475962 5 20 1 0 475963 order 1488 Caldilineales 4 0 13 1 3 0 4 1 475964 1475 family Caldilineaceae 2 25 1 0 Caldilinea genus 1471 233191 1 0 species Caldilinea aerophila 1446 133453 4170 class Dehalococcoidia 301297 97 1 0 9 1202465 2178 Dehalococcoidales order 5 0 1 1 1202464 2177 family Dehalococcoidaceae 1 1 0 4 61434 Dehalococcoides 2176 genus 1 5 0 3 237581 no rank 544 0 1 0 1 1522671 species Dehalococcoides sp. UCH007 544 Dehalococcoides mccartyi species 1627 61435 0 1 670486 genus Dehalogenimonas 1895 3 1 2 0 1 0 species Dehalogenimonas lykanthroporepellens 738 552810 1839801 Dehalogenimonas formicexedens species 1155 1 0 11 6 1 0 4129 class Chloroflexia 32061 0 1 21 10 order 4123 Chloroflexales 32064 1508594 suborder 1970 5 0 1106 family Chloroflexaceae 1970 5 1 6 0 4 0 38 1 1107 1964 genus Chloroflexus 1263 Chloroflexus aurantiacus species 1108 2 1 632 0 0 1 Chloroflexus sp. Y-400-fl strain 631 480224 species Chloroflexus aggregans 663 152260 0 1 1508595 2132 suborder 0 4 4 6 1 0 1508635 2132 family Roseiflexaceae 1 17 0 3 genus Roseiflexus 2126 120961 0 1 2609473 no rank 1258 357808 species Roseiflexus sp. RS-1 1258 0 1 0 1 species 851 Roseiflexus castenholzii 120962 1 12 0 8 class 1730 Thermomicrobia 189775 0 4 subclass 1270 85000 85001 1270 Sphaerobacterales order 1 15 0 4 suborder 1255 255728 3 0 family Sphaerobacteraceae 1255 85002 0 14 1 3 2 0 1 9 2056 1241 genus Sphaerobacter Sphaerobacter thermophilus 1232 species 2057 0 1 448 order Thermomicrobiales 189776 3 0 4 1 2 2 1 0 family Thermomicrobiaceae 444 189777 499 genus 442 1 0 species Thermomicrobium roseum 442 500 1 0 36 0 1297 phylum 31236 1 188 0 36 class 31236 Deinococci 188787 1037 order 2762275 3 0 3 0 7 1 332247 Trueperaceae 1037 family Truepera genus 1030 332248 0 1 8 2 0 1 species Truepera radiovictrix 1022 332249 1 164 0 15 118964 Deinococcales 19181 order 14 0 1 114 19017 Deinococcaceae family 183710 18903 genus Deinococcus 1298 0 1 315 13 1 0 1768108 species 1564 Deinococcus actinosclerus 0 1 Deinococcus gobiensis species 2156 502394 310783 1277 species Deinococcus deserti 1 0 1 0 Deinococcus proteolyticus species 1842 55148 1372 species Deinococcus puniceus 1182568 1 0 1334 no rank 2623546 0 1 2080419 Deinococcus sp. NW-56 species 1334 0 1 species Deinococcus soli Cha et al. 2016 1699 1309411 1 0 68909 Deinococcus geothermalis 1471 species 0 1 0 1 Deinococcus peraridilitoris 1032 species 432329 1299 1607 Deinococcus radiodurans species 1 0 0 1 309887 species Deinococcus maricopensis 1242 1 0 species Deinococcus swuensis 1992 1182571 68933 10830 order Thermales 17 115 1 0 family 10715 Thermaceae 188786 62 1 0 16 Meiothermus genus 2399 65551 0 19 1 3 0 1 52022 1184 species Meiothermus silvanus 277 species Meiothermus ruber 1196 1 0 Marinithermus genus 747 186191 0 14 1 2 186192 733 Marinithermus hydrothermalis species 0 1 208447 genus 1500 Oceanithermus 6 1 0 2 1 0 species Oceanithermus profundus 1494 187137 genus 6007 Thermus 270 0 1 194 8 Thermus aquaticus 802 species 271 0 1 0 1 274 Thermus thermophilus 1517 species 1 0 species Thermus scotoductus 739 37636 species 813 Thermus oshimai 56957 1 0 0 1 456163 species Thermus parvatiensis 690 56956 430 species Thermus brockianus 1 0 no rank 822 2619321 1 0 1 0 species Thermus sp. CCB_US3_UF1 822 1111069 67819 phylum 1021 0 5 1021 class Fimbriimonadia 1663419 0 1 3 5 1018 order Fimbriimonadales 1663425 0 8 1 4 9 1 0 3 Fimbriimonadaceae 1010 family 1663426 1005038 1001 genus Fimbriimonas 0 6 1 2 0 1 Fimbriimonas ginsengisoli 995 species 1005039 101 1 1 0 45252 Tenericutes phylum 544448 0 2 713063 no rank 3346 1 0 1911684 1520 Tenericutes bacterium MO-XQ species 0 1 1911683 1826 species Tenericutes bacterium MZ-XQ 1163 no rank 2799557 0 2 1912503 genus Candidatus Izimaplasma 1163 2 1 1 0 1162 no rank 2624196 1 0 0 1 1541959 Candidatus Izimaplasma sp. HR1 species 1162 1 58 0 96 Mollicutes class 40742 31969 186328 Entomoplasmatales order 19241 0 28 1 39 33925 6755 family Entomoplasmataceae 14 7 1 0 0 16 1 5 46238 1659 genus Entomoplasma 74700 Entomoplasma freundtii species 251 0 1 species 387 Entomoplasma somnilux 215578 0 1 0 1 81459 466 Entomoplasma melaleucae species 0 1 Entomoplasma luminosum species 539 214888 1 68 0 8 46239 genus Mesoplasma 5089 0 1 324078 Mesoplasma coleopterae 389 species 138853 1174 Mesoplasma lactucae species 0 1 species 441 Mesoplasma entomophilum 2149 0 1 species 926 Mesoplasma florum 2151 0 1 219745 species 371 Mesoplasma tabanidae 0 1 1 0 216427 646 Mesoplasma chauliocola species 225999 Mesoplasma syrphidae species 1074 0 1 24 0 24 1 family Spiroplasmataceae 12458 2131 2132 genus 12434 Spiroplasma 0 1 410 23 species Spiroplasma sabaudiense 555 216944 0 1 1 0 Spiroplasma taiwanense species 569 2145 1 0 1114980 Spiroplasma atrichopogonis species 411 216933 Spiroplasma chrysopicola 474 species 1 0 668 Spiroplasma diminutum species 216936 0 1 species 668 Spiroplasma floricola 216937 0 1 2136 species Spiroplasma monobiae 552 1 0 0 1 species Spiroplasma syrphidicola 371 216945 0 1 species Spiroplasma mirum 396 2144 Spiroplasma eriocheiris species 713 315358 1 0 0 1 species 538 Spiroplasma kunkelii 47834 species 744 Spiroplasma litorale 216942 1 0 2137 Spiroplasma apis species 337 1 0 216935 species Spiroplasma culicicola 765 0 1 no rank 1244 2637901 2 0 0 1 1914410 Spiroplasma sp. NBRC 100390 species 622 species Spiroplasma sp. TU-14 622 1898044 1 0 801 species Spiroplasma cantharicola 362837 0 1 0 1 216938 Spiroplasma helicoides species 470 529 species Spiroplasma clarkii 2139 1 0 0 1 375 Spiroplasma corruscae species 216934 1 0 2133 species Spiroplasma citri 436 0 1 216946 Spiroplasma turonicum species 408 0 12 1 13 186329 order Acholeplasmatales 6547 6535 Acholeplasmataceae family 2146 12 1 27 0 33926 Candidatus Phytoplasma genus 1480 0 1 90 6 3 0 786 species group 85620 species Aster yellows witches'-broom phytoplasma 222 229545 1 0 1 0 248 Maize bushy stunt phytoplasma species 202462 100379 Onion yellows phytoplasma 316 species 0 1 85632 335 species group 1 0 1 0 59748 335 Candidatus Phytoplasma australiense species 1 0 species group 269 85630 37692 269 Candidatus Phytoplasma mali species 0 1 5028 genus Acholeplasma 2147 5 1 119 0 1 0 1337 Acholeplasma palmae species 38986 1 0 35623 species Acholeplasma oculi 1540 61635 1066 species Acholeplasma brassicae 0 1 Acholeplasma laidlawii species 966 2148 1 0 2085 order 14896 Mycoplasmatales 43 0 28 1 42 50 1 0 14868 family Mycoplasmataceae 2092 12 0 4109 genus 2767358 2110 species Mycoplasma agalactiae 325 0 1 0 1 species Mycoplasma cynos 326 171284 1 0 2112 Mycoplasma bovigenitalium species 422 255 Mycoplasma bovirhinis species 29553 0 1 2109 species 183 Mycoplasma synoviae 0 1 Mycoplasma canis 327 species 29555 0 1 species Mycoplasma pulmonis 315 2107 1 0 1 0 48003 297 species Mycoplasma pullorum 0 1 Mycoplasma arginini species 407 2094 0 1 2113 274 species Mycoplasma californicum 1 0 species Mycoplasma fermentans 432 2115 28903 Mycoplasma bovis species 546 0 1 2093 genus 9849 Mycoplasma 27 0 1 96 50052 Mycoplasma crocodyli species 351 1 0 57372 species 143 Mycoplasma suis 1 0 1 0 60 Mycoplasma haemofelis species 29501 1 0 Mycoplasma gallisepticum species 361 2096 28227 526 species Mycoplasma penetrans 1 0 1 0 Mycoplasma arthritidis species 220 2111 1 0 Mycoplasma parvum species 79 984991 Mycoplasma bovoculi species 418 45362 0 1 0 1 species Mycoplasma yeatsii 930 51365 0 1 Mycoplasma mobile 526 species 2118 3 0 656088 species group 2755 1 0 Mycoplasma mycoides species 1438 2102 1 0 2105 species 573 Mycoplasma leachii 0 1 2095 744 Mycoplasma capricolum species 1 0 86660 species 254 Mycoplasma dispar 2100 species 279 Mycoplasma hyorhinis 1 0 Mycoplasma ovis species 52 171632 0 1 1 0 species Mycoplasma canadense 326 29554 1 0 species 191 Mycoplasma genitalium 2097 1 0 Mycoplasma wenyonii species 72 65123 2099 219 Mycoplasma hyopneumoniae species 1 0 1 0 species Mycoplasma pneumoniae 73 2104 2123 Mycoplasma putrefaciens species 280 0 1 1 0 2128 species Mycoplasma flocculare 228 1 0 136241 species 69 Mycoplasma haemocanis 1 0 2683645 no rank 698 1749074 species Mycoplasma sp. (ex Biomphalaria glabrata) 698 1 0 1 0 species Mycoplasma hominis 643 2098 2129 genus 860 2 0 0 1 2130 species Ureaplasma urealyticum 391 134821 Ureaplasma parvum 469 species 0 1 0 5 1577 phylum 200938 Chrysiogenetes 1577 class 118001 5 0 13 1 order 1564 Chrysiogenales 189769 1 14 0 4 0 11 1 3 189770 Chrysiogenaceae family 1550 0 1 1 2 Desulfurispirillum 1539 genus 393029 1 0 936456 Desulfurispirillum indicum 1538 species 0 3 2323 683 no rank 3 0 1783234 clade 683 2 0 95901 clade 545 2497643 545 class 0 2 0 2 2497644 order 545 0 2 545 family 2497645 1551504 genus 545 Candidatus Babela 2 0 1 35 673862 510 Candidatus Babela massiliensis species 0 1 0 1 95818 phylum 138 138 no rank 1895827 1 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 138 2056494 1 0 1783270 clade 10287322 370 0 456828 390 phylum 2 0 Candidatus Cloacimonas 390 genus 456826 0 1 1 2 456827 species 389 Candidatus Cloacimonas acidaminovorans 1 0 0 355 68336 clade 10279714 0 6 2145 phylum 1134404 2145 class Ignavibacteria 795747 6 0 1 27 5 1 72 0 2118 order Ignavibacteriales 795748 1334117 family 958 2 0 2 0 1 1 1134403 genus Melioribacter 958 0 1 Melioribacter roseus species 957 1134405 2 0 family 1088 795749 Ignavibacterium genus 1088 795750 0 1 3 2 591197 species Ignavibacterium album 1085 0 1 14457 phylum 1090 22 0 191410 Chlorobia 14457 class 22 82 1 0 21 293 1 0 14375 order Chlorobiales 191411 family 14082 Chlorobiaceae 191412 20 1 107 0 0 16 1 5 genus 2852 Prosthecochloris 1101 species Prosthecochloris aestuarii 569 1102 1 0 0 3 2632826 2267 no rank Prosthecochloris sp. HL-130-GSB 567 species 1974213 0 1 0 1 species Prosthecochloris sp. CIB 2401 682 1868325 281093 Prosthecochloris sp. GSB1 1018 species 0 1 6604 no rank 274493 0 8 3647 genus Chlorobium 1091 5 0 9 1 877 Chlorobium phaeovibrioides species 1094 0 1 0 1 species Chlorobium chlorochromatii 595 337090 1096 species Chlorobium phaeobacteroides 1211 1 0 1092 species Chlorobium limicola 955 1 0 3 1 2 0 1099 2957 genus Pelodictyon 1 0 Pelodictyon phaeoclathratiforme species 1472 34090 1 0 1100 species Pelodictyon luteolum 1483 842 genus Chloroherpeton 100715 2 1 14 0 0 1 Chloroherpeton thalassium species 828 100716 256319 Chlorobaculum 3677 genus 4 87 1 0 species Chlorobaculum tepidum 1040 1097 1 0 274539 Chlorobaculum parvum species 1126 0 1 species Chlorobaculum limnaeum 1424 274537 1 0 Bacteroidetes 10263112 phylum 976 0 79 1 327 15 0 18 1 1853228 Chitinophagia class 21431 14 0 1 38 1853229 21413 Chitinophagales order 13 48 1 0 563835 family 21375 Chitinophagaceae 0 7 1 3 79328 8130 Chitinophaga genus Chitinophagaceae bacterium 13 4051 species 2029983 0 1 0 1 79329 species 4072 Chitinophaga pinensis 1769012 genus Arachidicoccus 1854 1 1 0 2 1 0 2636138 no rank 1853 1850526 Arachidicoccus sp. BS20 1853 species 1 0 1 0 2792 genus 354354 354356 species 2792 Niastella koreensis 0 1 genus 2963 649460 1 0 species 2963 Filimonas lacunae 477680 1 0 3 25 1 0 379899 Niabella 3932 genus Niabella ginsenosidivorans species 2080 1176587 0 1 446683 species Niabella soli 1827 1 0 1 29 0 2 398041 Flavisolibacter genus 1656 0 1 1627 species Flavisolibacter tropicus 1492898 class Flavobacteriia 228387 117743 0 28 1 143 order Flavobacteriales 228359 200644 1 167 0 142 313602 no rank 374 2 0 1940138 genus 75 0 1 75 Candidatus Walczuchella monophlebidarum species 1415657 1 0 1 0 299 genus 336809 1 0 Candidatus Sulcia muelleri species 299 336810 2 0 330 family 1755828 330 genus Ichthyobacterium 1755829 0 1 1 2 1 0 242600 329 Ichthyobacterium seriolicida species 3 0 1 1 1853230 family 2524 Crocinitomicaceae 15 1 0 2 332102 2523 genus Fluviicola 191579 Fluviicola taffensis 2508 species 0 1 0 21 2762318 family 77219 24138 genus Ornithobacterium 28250 1 300 0 2 28251 species Ornithobacterium rhinotracheale 23838 0 1 2 1 3 0 34084 genus Riemerella 4666 species 4663 Riemerella anatipestifer 34085 0 1 0 57 1 6 genus 12928 Elizabethkingia 308865 Elizabethkingia genomosp. 3 species 1881 1756149 1 0 3095 species Elizabethkingia miricola 172045 0 1 1 0 238 Elizabethkingia meningoseptica species 2060 0 1 1117645 4750 species Elizabethkingia anophelis 1 0 1756150 1085 species Elizabethkingia genomosp. 4 10 0 no rank 34430 2782232 9 1 57 0 genus 30267 Chryseobacterium 59732 Chryseobacterium camelliae species 2726 1265445 0 1 1 0 253 4325 Chryseobacterium indologenes species 0 3 6465 no rank 2593645 0 1 2015076 species Chryseobacterium sp. T16E-39 2156 1 0 878220 2314 Chryseobacterium sp. StRB126 species Chryseobacterium sp. IHB B 17019 species 1995 1721091 1 0 1 0 1685010 Chryseobacterium glaciei species 2080 species Chryseobacterium gallinarum 12927 1324352 0 1 1 0 558152 Chryseobacterium piperi species 1687 genus 4163 2782228 0 1 1 0 536441 species Chryseobacterium taklimakanense 4163 0 1 genus 1057 1013 0 1 species Weeksella virosa 1057 1014 Blattabacteriaceae 2152 family 39782 1 1 0 10 0 1 24 9 2151 genus Blattabacterium 34098 6 0 2647581 no rank 1562 1186051 Blattabacterium sp. (Blaberus giganteus) 367 species 1 0 0 1 1316444 species Blattabacterium sp. (Nauphoeta cinerea) 243 367806 136 Blattabacterium sp. (Blatta orientalis) species 0 1 0 1 species 184 Blattabacterium sp. (Mastotermes darwiniensis) 39768 species Blattabacterium sp. (Periplaneta americana) 143 367488 1 0 624186 species Blattabacterium sp. (Blattella germanica) 489 0 1 Blattabacterium punctulatus 309 species 164514 1 0 species 256 Blattabacterium cuenoti 1653831 1 0 246874 Cryomorphaceae family 2 0 1 100 0 1 3682 family 144414 Flavobacteriaceae 49546 genus Nonlabens 4477 363408 0 1 26 5 0 1 319236 species Nonlabens sediminis 1294 1945 no rank 2615035 0 2 1 0 species 1306 Nonlabens sp. MIC269 1476901 1 0 Nonlabens sp. MB-3u-79 species 639 2058134 328515 Nonlabens dokdonensis species 1212 1 0 3209 genus Dokdonia 326319 4 1 0 4 no rank 1760 2615033 0 2 species Dokdonia sp. MED134 845 313590 1 0 0 1 983548 species Dokdonia sp. 4H-3-7-5 915 1 0 1445 species Dokdonia donghaensis 326320 1 0 genus 1119 261827 1 0 1736674 species 1119 Algibacter alginicilyticus 1 0 1176327 genus 856 0 1 856 no rank 2636237 2094025 Aureitalea sp. RR4-38 856 species 1 0 0 1 389486 genus 1332 no rank 1332 2648869 1 0 1 0 Sediminicola sp. YIK13 species 1332 1453352 2700084 genus 1365 1 0 1365 Lutibacter sp. LPB0138 species 1850246 1 0 76831 genus Myroides 13509 1 110 0 5 2642485 no rank 4055 2 0 species 1904 Myroides sp. A21 1583100 0 1 2151 species Myroides sp. ZB35 1458492 1 0 1 0 species Myroides odoratimimus 7935 76832 0 1 1409 species Myroides profundi 480520 2177 genus Zunongwangia 417127 2 17 1 0 species Zunongwangia profunda 2160 398743 1 0 0 19 1 5 104267 Tenacibaculum 5253 genus 1850252 Tenacibaculum todarodis species 1267 1 0 584609 1576 Tenacibaculum jejuense species 0 1 1345 Tenacibaculum dicentrarchi species 669041 1 0 107401 Tenacibaculum maritimum species 1046 1 0 1204360 genus Siansivirga 1113 2 0 1 2 Siansivirga zeaxanthinifaciens species 1111 762954 1 0 0 1 1209327 genus 1135 1803846 species 1135 Flavivirga eckloniae 1 0 7224 Gramella genus 292691 6 1 0 5 1 0 Gramella forsetii 2090 species 411153 2017 Gramella flava species 1486245 0 1 1 0 1913577 Gramella sp. LPB0144 species 1288 1 0 2126553 1823 Gramella sp. SH35 species 336276 598 genus 0 1 0 1 598 no rank 2615019 2058135 598 species Olleya sp. Bg11-27 0 1 112040 1806 genus 0 1 0 1 species Zobellia galactanivorans 1806 63186 286104 1926 genus 2 0 2 0 2615021 no rank 1926 0 1 754409 Winogradskyella sp. PG-2 species 805 1936080 Winogradskyella sp. J14-2 species 1121 0 1 1394 genus 1518147 0 1 1 0 1790137 1394 Wenyingzhuangia fucanilytica species 0 1 genus 1007 178469 616991 Arenibacter algicola species 1007 1 0 genus 3902 Cellulophaga 104264 1 1 0 4 Cellulophaga lytica species 1546 979 1 0 Cellulophaga baltica species 1514 76594 1 0 59600 Cellulophaga algicola species 841 0 1 0 1 393005 1962 genus 1 0 2069432 species 1962 Tamlana sp. UJ94 14830 genus Flavobacterium 237 9 0 1 102 996 Flavobacterium columnare species 2474 0 1 0 1 1492737 species 1320 Flavobacterium gilvum 1 0 species Flavobacterium psychrophilum 918 96345 1 0 55197 1099 Flavobacterium branchiophilum species 312277 1038 Flavobacterium indicum species 0 1 1306519 species Flavobacterium commune 1830 1 0 0 1 species 1214 Flavobacterium crassostreae 1763534 986 species Flavobacterium johnsoniae 4835 1 0 1 0 965 genus 153265 101385 965 species Aequorivita sublithincola 0 1 52959 5739 genus Polaribacter 81 1 0 6 3085 no rank 196858 3 0 0 1 Polaribacter sp. BM10 968 species 1529069 1 0 Polaribacter sp. ALD11 species 1038 2058137 0 1 313598 Polaribacter sp. MED152 1079 species 1135 species Polaribacter reichenbachii 996801 0 1 1774273 1438 species Polaribacter vadi 1 0 3 0 10 1 genus Formosa 1670 225842 2 0 2644710 no rank 1660 species Formosa sp. Hel3_A1_48 722 1336795 1 0 Formosa sp. Hel1_33_131 species 938 1336794 1 0 0 1 1119 genus 216431 0 1 species Croceibacter atlanticus 1119 313588 252356 6330 genus Maribacter 5 5 1 0 0 1 1178778 1325 species Maribacter cobaltidurans 2615042 no rank 5000 0 3 1836467 Maribacter sp. T28 species 1229 0 1 1 0 species Maribacter sp. 1_2014MBL_MicDiv 2527 1644130 0 1 313603 Maribacter sp. HTCC2170 1244 species Capnocytophaga genus 39505 1016 15 0 309 1 0 1 species Capnocytophaga haemolytica 2186 45243 6 0 2640652 12460 no rank 1316596 3208 Capnocytophaga sp. oral taxon 878 species 1 0 209053 2184 species Capnocytophaga sp. ChDC OS43 1 0 1945657 species Capnocytophaga sp. H2931 1317 0 1 1705617 2214 species Capnocytophaga sp. oral taxon 323 0 1 0 1 species Capnocytophaga sp. oral taxon 864 2296 1316593 Capnocytophaga sp. H4358 species 1241 1945658 0 1 1848904 Capnocytophaga stomatis species 2511 0 1 0 1 species 3383 Capnocytophaga sputigena 1019 1017 Capnocytophaga gingivalis species 8891 1 0 0 1 4435 Capnocytophaga leadbetteri species 327575 1 0 species Capnocytophaga ochracea 2046 1018 0 1 907 species Capnocytophaga cynodegmi 28189 0 1 2377 species Capnocytophaga canimorsus 28188 1073 genus 83612 0 1 species Psychroflexus torquis 1073 57029 1 0 2 0 23 1 143222 genus Salegentibacter 1425 1 0 2633436 no rank 1402 0 1 species Salegentibacter sp. T436 1402 1729720 2 0 genus 2407 111500 species Muricauda ruestringensis 1443 111501 1 0 0 1 Muricauda lutaonensis species 964 516051 1 2 0 2 genus Lutibacter 873 358023 1622118 871 species Lutibacter profundi 0 1 61432 no rank 2872 2 0 1150389 species 1306 Flavobacteriaceae bacterium UJ101 0 1 1 0 species Flavobacteriaceae bacterium 3519-10 1566 531844 genus Lacinutrix 2631 291183 4 1 1 0 1725 no rank 2647285 2 0 1 0 983544 Lacinutrix sp. 5H-3-7-4 species 799 2057808 Lacinutrix sp. Bg11-31 species 926 1 0 1486034 Lacinutrix venerupis species 905 0 1 252306 2347 genus 1 0 species Robiginitalea biformata 2347 252307 1 0 1649495 1582 genus 1 0 1 0 2622645 no rank 1582 1 0 Seonamhaeicola sp. S2-3 1582 species 1936081 2 0 1333713 1177 family 2 1 5 0 Owenweeksia 1177 genus 267986 1 0 253245 species Owenweeksia hongkongensis 1172 38508 class Sphingobacteriia 117747 27 1 0 24 200666 order Sphingobacteriales 38481 0 29 1 23 Sphingobacteriaceae 38452 family 84566 1 49 0 22 0 1 2781 no rank 84568 0 1 species 2781 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 1649482 Pseudopedobacter genus 2243 2 0 1 6 0 1 151895 species Pseudopedobacter saltans 2237 4 0 1 4 Mucilaginibacter 5545 genus 423349 1 0 1234841 Mucilaginibacter sp. BJC16-A31 1926 species 1 0 2617802 1757 no rank 1300914 species Mucilaginibacter sp. PAMC 26640 1757 1 0 0 1 1550579 Mucilaginibacter gotjawali species 1858 2761 Solitalea genus 929509 2 1 4 0 1 0 2757 Solitalea canadensis species 995 genus 12344 Sphingobacterium 28453 6 0 1 23 4 0 2609468 no rank 10330 1538644 Sphingobacterium sp. ML3W species 2231 1 0 743722 2379 species Sphingobacterium sp. 21 0 1 0 1 1933220 Sphingobacterium sp. B29 3206 species 2003121 2514 Sphingobacterium sp. G1-14 species 0 1 1010 Sphingobacterium mizutaii species 1991 0 1 0 1 20 6 84567 genus Pedobacter 12729 0 1 Pedobacter cryoconitis 2592 species 188932 0 1 430522 Pedobacter steynii species 2960 species Pedobacter ginsengisoli 2459 363852 1 0 no rank 2728 2628915 0 1 0 1 species Pedobacter sp. PACM 27299 2728 1727164 0 1 984 species Pedobacter heparinus 1970 1 277 0 72 9878328 Bacteroidia class 200643 60 0 3741 1 Bacteroidales 9868140 order 171549 family Bacteroidaceae 3924269 815 11 72 1 0 10 59605 1 0 genus Bacteroides 3924197 816 Bacteroides fragilis species 390201 817 0 1 28116 1035205 Bacteroides ovatus species 1 0 1 0 290053 Bacteroides helcogenes species 133872 246787 Bacteroides cellulosilyticus species 788282 1 0 28119 species Bacteroides zoogleoformans 109583 0 1 1 0 Bacteroides heparinolyticus 109109 species 28113 1796613 species Bacteroides caecimuris 542201 1 0 1 0 Bacteroides thetaiotaomicron species 516234 818 0 1 species Bacteroides caccae 239905 47678 1 63 0 4 24671 Porphyromonadaceae family 171551 836 24608 Porphyromonas genus 0 1 20 3 Porphyromonas gingivalis species 17991 837 0 1 0 1 species Porphyromonas asaccharolytica 6597 28123 0 6 1 3 2005519 143813 Barnesiellaceae family 137 1 0 2 397864 Barnesiella 143807 genus species Barnesiella viscericola 143670 397865 1 0 185291 2490 no rank 1 0 species Bacteroidales bacterium CF 2490 1400053 1 0 2005520 family 33328 Dysgonamonadaceae 7 0 2 1 0 43 1 2 genus 13408 Petrimonas 307628 13365 species Petrimonas mucosa 1642646 0 1 0 8 1 2 1784836 9259 genus Fermentimonas 1 0 species Fermentimonas caenicola 9251 1562970 1 31 0 2 294702 Proteiniphilum genus 10659 0 1 species Proteiniphilum saccharofermentans 10628 1642647 5 0 no rank 3270219 333046 1 1 0 2 511434 1695 Candidatus Azobacteroides genus species Candidatus Azobacteroides pseudotrichonymphae 1694 511435 0 1 3 0 909656 3268524 genus 0 1 821 species 2619491 Bacteroides vulgatus 1 0 357276 species Bacteroides dorei 545414 1 0 103619 Bacteroides salanitronis species 376805 Tannerellaceae 1109097 family 2005525 0 1 327 7 3 0 79 1 195950 genus Tannerella 51144 2620507 11993 no rank 1 0 1 0 712710 species 11993 Tannerella sp. oral taxon HOT-286 1 0 28112 species Tannerella forsythia 39072 3 1 255 0 genus 1057626 Parabacteroides 375288 0 1 species Parabacteroides distasonis 441634 823 1 0 no rank 615737 2649774 615737 Parabacteroides sp. CT06 species 2025876 0 1 1853231 family Odoribacteraceae 67961 3 1 0 3 283168 67958 Odoribacter genus 1 15 0 2 0 1 Odoribacter splanchnicus species 67943 28118 Rikenellaceae family 201966 171550 5 0 1 27 1611681 genus 4535 Mucinivorans 2 0 4 1 0 1 4531 species Mucinivorans hirudinis 1433126 2 213 1 0 genus 197404 Alistipes 239759 197191 Alistipes finegoldii species 214856 0 1 0 2 2005523 family 8578 8578 Paludibacter genus 346096 0 1 18 2 1 0 Paludibacter propionicigenes species 8560 185300 171552 1078007 family Prevotellaceae 0 113 1 11 2341 1 0 10 838 genus 1077894 Prevotella 0 1 1177574 species 131097 Prevotella jejuni 1 0 Prevotella ruminicola 145219 species 839 0 1 28129 80654 species Prevotella denticola 0 1 Prevotella enoeca species 45742 76123 1 0 Prevotella intermedia species 260859 28131 0 1 28132 Prevotella melaninogenica 161000 species no rank 29209 2638335 0 1 1 0 652716 species Prevotella sp. oral taxon 299 29209 species Prevotella fusca 130095 589436 1 0 52227 species 91678 Prevotella dentalis 1 0 11 9 1 0 order 9911 Marinilabiliales 1970189 558415 2002 family Marinilabiliaceae 0 1 4 3 1193324 genus Alkalitalea 1998 1 1 0 2 1 0 889453 Alkalitalea saponilacus species 1997 1573805 family 2614 Marinifilaceae 2 0 9 1 1 0 genus 2605 2060722 0 1 Marinifilaceae bacterium SPP2 2605 species 1717717 0 2 1970190 1185 family 2 0 5 1 1970191 1185 genus Salinivirga 1 0 Salinivirga cyanobacteriivorans species 1180 1307839 3 0 1 7 Prolixibacteraceae 4101 family 1471398 Draconibacterium genus 4094 1471399 2 26 1 0 1 0 Draconibacterium orientale species 4068 1168034 6635 Bacteroidetes Order II. Incertae sedis order 1100069 0 83 1 7 1 39 0 6 563843 6552 family Rhodothermaceae 1196022 2627 no rank 1 0 Rhodothermaceae bacterium RA 2627 species 1779382 0 1 1 19 0 2 Salinibacter genus 1130 146918 species Salinibacter ruber 1111 146919 0 1 29548 2756 genus Rhodothermus 2 0 55 1 29549 2701 species Rhodothermus marinus 1 0 0 219 1 59 768503 Cytophagia class 86955 86736 order Cytophagales 768507 58 0 213 1 16 105 1 0 1853232 43065 family Hymenobacteraceae 4 1 52 0 genus 8146 Rufibacter 1379908 2639626 no rank 4692 2 0 1379910 2001 species Rufibacter sp. DG31D 0 1 2691 Rufibacter sp. DG15C species 1379909 0 1 1 0 species 3402 Rufibacter tibetensis 512763 0 1 25 3 323449 genus Pontibacter 8635 388950 species Pontibacter akesuensis 3643 0 1 0 1 species Pontibacter korlensis 4967 400092 genus 26179 Hymenobacter 89966 8 193 1 0 1411621 4514 species Hymenobacter sedentarius 0 1 1 0 1446467 Hymenobacter swuensis 3698 species 5 0 2615202 17774 no rank 1 0 1385663 Hymenobacter sp. DG25A species 2316 0 1 species Hymenobacter sp. APR13 4245 1356852 1 0 1385664 species Hymenobacter sp. DG25B 3082 1 0 1484118 species 4103 Hymenobacter sp. PAMC 26628 1484116 species Hymenobacter sp. PAMC 26554 4028 1 0 family 799 Amoebophilaceae 1501348 4 2 1 0 0 1 273135 genus 499 499 no rank 2641185 1 0 0 1 species Cardinium endosymbiont of Encarsia pergandiella 499 249402 2 0 1 1 281119 298 Candidatus Amoebophilus genus 297 species Candidatus Amoebophilus asiaticus 281120 1 0 1853234 3730 family Persicobacteraceae 4 1 0 3 59740 genus Persicobacter 3726 0 2 1 2 1 0 3724 no rank 2664020 0 1 1085624 species Persicobacter sp. JZB09 3724 200667 Flammeovirgaceae family 6319 0 9 1 4 340671 3167 no rank 1 0 0 1 Flammeovirgaceae bacterium 311 3167 species 1257021 genus Flammeovirga 3143 59739 2 1 2 0 0 1 2637820 3141 no rank 1 0 1191459 species Flammeovirga sp. MY04 3141 16 0 1 28 89373 family Cytophagaceae 22960 4 1 0 2 105 Runella 2057 genus 106 Runella slithyformis 2053 species 1 0 Spirosoma 9468 genus 107 34 1 0 6 Spirosoma radiotolerans species 1616 1379870 1 0 1 0 1211326 Spirosoma aerolatum 1425 species 1 0 species 2630 Spirosoma sp. HA7 2057025 1 0 species Spirosoma rigui 1632 564064 1 0 species Spirosoma montaniterrae 2131 1178516 978 Cytophaga 2244 genus 1 4 0 2 2240 Cytophaga hutchinsonii species 985 0 1 1 0 319458 genus 2911 316068 species 2911 Leadbetterella byssophila 1 0 861914 2953 Fibrella genus 1 2 0 2 2951 no rank 2620963 0 1 1 0 1834519 Fibrella sp. ES10-3-2-2 2951 species 3299 genus Dyadobacter 120831 1 1 0 2 1 0 94254 3298 species Dyadobacter fermentans 563798 family Cyclobacteriaceae 6544 0 1 11 9 0 1 390846 genus 1837 0 1 390884 species Echinicola vietnamensis 1837 Belliella genus 1194 232244 2 0 18 1 1 0 1176 species Belliella baltica 232259 68288 genus 2267 Cyclobacterium 13 1 0 3 1439 species Cyclobacterium amurskyense 320787 0 1 104 Cyclobacterium marinum 815 species 0 1 2 0 1 3 246875 genus Algoriphagus 1235 Algoriphagus sp. M8-2 species 1232 1727163 1 0 3 5 1 0 1937968 Bernardetiaceae family 1607 1937972 1602 genus Bernardetia 2 2 1 0 999 Bernardetia litoralis 1600 species 1 0 2 0 2762301 1499 family 2 0 3 1 869806 genus 1499 Marivirga 1006 Marivirga tractuosa species 1496 1 0 10 1 0 6 1937959 2789 class Saprospiria 1936988 2779 order Saprospirales 5 0 1 4 family Haliscomenobacteraceae 1785 1937961 0 1 1 3 2349 Haliscomenobacter 1784 genus 0 1 14 2 2350 species Haliscomenobacter hydrossis 1770 0 1 990 family 89374 0 1 990 genus 1007 0 1 0 1 species Saprospira grandis 990 1008 0 5 65842 phylum 3478 class 3478 Fibrobacteria 204430 5 0 5 1 4 0 1 4 order 3473 Fibrobacterales 218872 204431 3469 Fibrobacteraceae family 0 1 2 3 3 1 0 2 832 Fibrobacter 3467 genus 1 0 833 species Fibrobacter succinogenes 3464 3740 phylum 142182 8 0 Gemmatimonadetes 3740 class 219685 0 1 84 8 63 1 0 7 219686 order Gemmatimonadales 3656 0 1 21 6 3593 Gemmatimonadaceae family 219687 1706036 Gemmatirosa genus 1672 0 4 1 2 Gemmatirosa kalamazoonesis 1668 species 861299 0 1 genus 1900 Gemmatimonas 173479 3 1 22 0 173480 Gemmatimonas aurantiaca species 974 1 0 Gemmatimonas phototrophica species 904 1379270 0 1 0 4 2498710 clade 353 0 4 67814 phylum 353 Caldisericia class 353 693071 4 1 1 0 693072 352 order 3 0 693073 family 352 Caldisericaceae 1 1 0 3 2 0 6 1 693074 Caldisericum genus 351 345 Caldisericum exile species 693075 0 1 885 1 0 2008 1224 phylum Proteobacteria 2257681 1236 Gammaproteobacteria 1204326 class 1 1839 0 883 12 50 1 0 135618 5410 order Methylococcales 51 1 0 11 5360 family Methylococcaceae 403 3099 Methylomonas genus 416 0 53 1 5 2608980 871 no rank 1 0 1 0 1727196 871 species Methylomonas sp. DH-1 Methylomonas koyamae species 764 702114 0 1 1 0 Methylomonas methanica 614 species 421 species Methylomonas denitrificans 797 1538553 1 0 534 Methylovulum genus 762296 2 4 1 0 0 1 Methylovulum psychrotolerans 530 species 1704499 1 18 0 2 413 genus 851 Methylococcus 414 species Methylococcus capsulatus 833 0 1 39773 genus 825 0 1 0 1 825 Methylomicrobium alcaliphilum species 271065 1 6 0 34 order Thiotrichales 14926 72273 14 1 19 0 8742 family Francisellaceae 34064 genus 515 1869285 1 0 1 0 594679 species 515 Allofrancisella guangzhouensis 1 69 0 12 262 genus 8208 Francisella 1 0 954 Francisella persica species 384 species Francisella sp. CA97-1460 568 1542390 1 0 1 0 28110 species Francisella philomiragia 1706 0 1 species 1037 Francisella noatunensis 657445 573570 species Francisella sp. TX077310 537 1 0 species Francisella tularensis 1454 263 0 1 409 species Francisella hispaniensis 622488 1 0 573569 581 species Francisella sp. TX077308 1 0 2610885 1157 no rank 2 0 Francisella sp. FSC1006 species 863 1547445 1 0 1 0 475375 294 Francisella sp. MA067296 species species Francisella halioticida 306 549298 0 1 0 1 15 15 family 5281 Piscirickettsiaceae 135616 2 1 0 3 40222 genus Methylophaga 857 1 0 Methylophaga frappieri species 376 754477 754476 species Methylophaga nitratireducenticrescens 479 1 0 genus Cycloclasticus 1746 34067 1 1 0 4 1329899 species Cycloclasticus zancles 677 0 1 2621467 no rank 1068 0 2 0 1 Cycloclasticus sp. P1 species 463 385025 1 0 Cycloclasticus sp. PY97N species 605 728003 0 1 1 3 955 Thiomicrospira genus 933 373 Thiomicrospira cyclica species 147268 0 1 Thiomicrospira aerophila species 581 92245 1 0 0 10 1 2 genus Hydrogenovibrio 491 28884 39765 species 481 Hydrogenovibrio crunogenus 1 0 Piscirickettsia genus 1217 1237 0 1 12 2 1238 1205 Piscirickettsia salmonis species 1 0 family Thiotrichaceae 897 135617 4 1 1 0 0 1 1021 genus 550 1 0 288004 550 Beggiatoa leptomitoformis species Thioploca genus 346 40751 0 1 1 2 Thioploca ingrica species 345 40754 1 0 order 38700 Oceanospirillales 135619 0 1 483 67 9 59 1 0 224372 family 5931 Alcanivoracaceae 1 10 0 2 2025617 genus Ketobacter 827 1917421 species Ketobacter alkanivorans 817 1 0 6 89 1 0 59753 5045 genus Alcanivorax 1 0 1472 Alcanivorax pacificus species 1306787 59754 Alcanivorax borkumensis 503 species 0 1 2638842 559 no rank 1 0 1 0 1113728 species Alcanivorax sp. NBRC 101098 559 0 1 species Alcanivorax xenomutans 1308 1094342 Alcanivorax dieselolei species 1114 285091 1 0 224379 family 930 Hahellaceae 3 7 1 0 2 0 1 1 Hahella genus 923 158481 0 1 158327 species 922 Hahella chejuensis family Kangiellaceae 1674 1920240 0 1 10 6 genus Kangiella 1664 261963 58 1 0 5 474 Kangiella profundi species 1561924 1 0 1 0 460 species Kangiella sediminilitoris 1144748 261964 species Kangiella koreensis 418 1 0 914150 species 254 Kangiella geojedonensis 0 1 30 0 1 395 28256 21703 family Halomonadaceae 15 0 1 304 2745 genus 13872 Halomonas species 1408 Halomonas aestuarii 1897729 1 0 1 0 1178482 Halomonas huangheensis species 899 2609666 6209 no rank 0 8 2136172 1341 Halomonas sp. SF2003 species 1 0 1971364 Halomonas sp. GT species 439 1 0 1 0 species 344 Halomonas sp. GFAJ-1 1118153 1 0 1580 species Halomonas sp. 1513 1883416 1 0 1610576 species Halomonas sp. R57-5 672 0 1 1949203 659 Halomonas sp. 'Soap Lake #6' species 1504981 species Halomonas sp. KO116 515 1 0 0 1 1962264 Halomonas sp. 'Soap Lake #7' species 659 0 1 475662 species 2417 Halomonas beimenensis 1 0 507626 species Halomonas chromatireducens 930 1 0 115561 Halomonas hydrothermalis species 1239 species Halomonas campaniensis 466 213554 1 0 114403 no rank 158 0 3 235572 genus 31 1 0 91844 species 31 Candidatus Portiera aleyrodidarum 1 0 1 0 genus 103 1495768 species 103 Candidatus Evansia muelleri 1495769 0 1 genus 24 114185 1 0 114186 24 species Candidatus Carsonella ruddii 1 0 30 1 0 2 376488 Halotalea genus 1098 0 1 376489 Halotalea alkalilenta 1068 species 1 10 0 3 504090 Kushneria genus 2764 Kushneria konosiri species 1374 698828 0 1 1 0 Kushneria marisflavi species 1380 157779 2 5 1 0 42054 genus Chromohalobacter 1024 0 1 158080 Chromohalobacter salexigens species 1019 404432 genus 1190 Salinicola 2 0 1 16 0 1 1771309 species Salinicola tamaricis 1174 0 1 6 2 204286 Cobetia 1202 genus 1196 species Cobetia marina 28258 0 1 6052 family Oceanospirillaceae 135620 10 0 142 1 Marinobacterium 2097 genus 48075 2 0 334 1 1 0 Marinobacterium aestuarii 1763 species 1821621 0 1 genus 512 1537406 Bacterioplanes sanyensis species 512 1249553 1 0 1 11 0 4 genus 1981 Marinomonas 28253 0 1 196814 470 no rank 0 1 400668 470 species Marinomonas sp. MWYL1 0 1 Marinomonas mediterranea species 584 119864 1 0 species 916 Marinomonas posidonica 936476 1 0 187492 647 genus species Thalassolituus oleivorans 647 187493 0 1 188907 genus 673 1 0 1 0 species Oleispira antarctica 673 188908 3 1 1 0 family Oleiphilaceae 444 191033 141450 Oleiphilus genus 443 0 10 1 2 0 1 Oleiphilus messinensis 433 species 141451 255527 1483 family Saccharospirillaceae 1 4 0 5 genus 529 Reinekea 230494 2 3 1 0 Reinekea forsetii species 526 1336806 1 0 2 0 1 13 950 genus Gynuella 1445504 1 0 1445505 species 937 Gynuella sunshinyii Aeromonadales order 41456 135624 0 204 1 28 84642 41252 family Aeromonadaceae 0 328 1 27 129577 2022 Oceanimonas genus 2 41 1 0 0 1 1981 no rank 2636315 0 1 511062 species Oceanimonas sp. GK1 1981 2 0 1 6 43947 Tolumonas genus 1277 0 1 43948 species 1271 Tolumonas auensis 225143 2021 genus 0 2 0 1 species Oceanisphaera profunda 1744 1416627 0 1 species 277 Oceanisphaera sp. AMac2203 1903694 347533 genus 2503 Zobellella 2 0 22 1 1 0 Zobellella denitrificans 2481 species 347534 18 0 1 2240 Aeromonas 33101 genus 642 species 1779 Aeromonas aquatica 558964 1 0 644 6891 species Aeromonas hydrophila 1 0 Aeromonas media 1495 species 651 1 0 species Aeromonas caviae 947 648 0 1 1612 Aeromonas rivipollensis species 948519 1 0 8 0 9574 no rank 257493 0 1 1636609 species Aeromonas sp. ASNIH4 1773 0 1 1758179 Aeromonas sp. ASNIH5 species 1137 2033032 1318 species Aeromonas sp. CA23 1 0 2033033 Aeromonas sp. CU5 species 1454 1 0 0 1 1636608 species 1464 Aeromonas sp. ASNIH3 1636606 species Aeromonas sp. ASNIH1 852 0 1 0 1 species 735 Aeromonas sp. ASNIH2 1636607 species Aeromonas sp. ASNIH7 841 1920107 0 1 0 1 species Aeromonas dhakensis 1543 196024 Aeromonas schubertii species 1814 652 1 0 645 species 2075 Aeromonas salmonicida 0 1 1 0 Aeromonas veronii species 3131 654 1240482 1323 order 5 0 5 13 1 0 1240483 1323 family Orbaceae 2 1 1 0 1335631 Frischella genus 678 677 Frischella perrara species 1267021 0 1 2 1 1 0 genus Gilliamella 632 1193503 1 0 Gilliamella apicola 631 species 1196095 20 0 5 1 118969 9038 order Legionellales 118968 family Coxiellaceae 1465 3 1 0 5 3 0 1 12 Coxiella 1294 genus 776 0 1 777 1167 Coxiella burnetii species 1 0 no rank 115 2676648 325775 Coxiella endosymbiont of Amblyomma americanum 115 species 0 1 134284 no rank 168 1 0 1592897 168 species Coxiella-like endosymbiont 0 1 1 15 0 14 Legionellaceae 7568 family 444 genus 7219 Legionella 445 1 12 0 12 1 0 96230 species Legionella fallonii 242 0 1 Legionella waltersii species 327 66969 0 1 species 391 Legionella lansingensis 45067 Legionella spiritensis species 461 452 1 0 0 1 552 Legionella sainthelensi species 28087 0 1 Legionella pneumophila 3243 species 446 0 1 species Legionella endosymbiont of Polyplax serrata 253 2005262 1 0 1867846 species Legionella clemsonensis 425 29423 species 350 Legionella oakridgensis 0 1 1 0 species Legionella hackeliae 456 449 1 0 Legionella longbeachae 507 species 450 genus 334 465 0 1 1 0 451 Tatlockia micdadei species 334 336 order Cardiobacteriales 135615 3 0 61 1 2 0 868 family 275 Dichelobacter 275 genus 869 0 1 1 2 Dichelobacter nodosus species 274 870 0 1 52 1 419 0 27923 order Chromatiales 135613 3 1 2 0 Granulosicoccaceae family 1533 449719 0 1 1 2 1531 Granulosicoccus genus 437504 0 1 Granulosicoccus antarcticus 1530 species 437505 no rank 1559 451214 2 0 1273155 1559 Thiohalobacter genus 0 20 1 2 585455 species 1539 Thiohalobacter thiocyanaticus 1 0 18 0 1 161 Ectothiorhodospiraceae family 11106 72276 6 1 0 2 genus Ectothiorhodospira 1256 1051 1250 no rank 2684909 1 0 0 1 1442136 species Ectothiorhodospira sp. BSL-9 1250 0 1 18 3 1335745 1121 Spiribacter genus 259 Spiribacter salinus species 1335746 0 1 Spiribacter curvatus 844 species 1335757 0 1 2 0 1 5 genus 996 Halorhodospira 85108 1053 Halorhodospira halophila 991 species 1 0 701 genus Acidihalobacter 1765964 2 6 1 0 Acidihalobacter prosperus species 695 160660 1 0 0 25 1 2 133193 1359 genus Alkalilimnicola 0 1 Alkalilimnicola ehrlichii species 1334 351052 106633 genus Thioalkalivibrio 5512 6 0 133 1 species Thioalkalivibrio nitratireducens 856 186931 0 1 Thioalkalivibrio versutus 1159 species 106634 0 1 1 0 Thioalkalivibrio sulfidiphilus species 1932 1033854 108010 Thioalkalivibrio paradoxus 671 species 0 1 0 1 2621013 no rank 761 761 species Thioalkalivibrio sp. K90mix 396595 0 1 1531 family Halothiobacillaceae 255526 4 0 1 20 109262 Halothiobacillus genus 1511 0 1 28 3 2636392 no rank 635 1 0 0 1 1860122 Halothiobacillus sp. LS2 635 species 1 0 848 species Halothiobacillus neapolitanus 927 1 5 0 3 1349 family Wenzhouxiangellaceae 1676141 2 0 1 51 Wenzhouxiangella genus 1344 1676142 1579979 Wenzhouxiangella marina species 1293 1 0 18 1 154 0 9956 family Chromatiaceae 1046 2 0 1 7 genus 743 Thioflavicoccus 156885 0 1 80679 736 species Thioflavicoccus mobilis 4 0 4 1 genus Nitrosococcus 1167 1227 1229 Nitrosococcus oceani species 417 1 0 0 1 473531 species 318 Nitrosococcus watsonii 1 0 species 428 Nitrosococcus halophilus 133539 0 1 46 2 genus 1395 Marichromatium 85076 37487 species Marichromatium purpuratum 1349 1 0 no rank 1099 82569 1 0 1978339 species 1099 Chromatiaceae bacterium 2141T.STBD.0c.01a 1 0 1 23 0 2 genus 2431 Thiodictyon 53392 species Candidatus Thiodictyon syntrophicum 2408 1166950 0 1 13724 Thiocystis 1337 genus 0 29 1 2 73141 species Thiocystis violascens 1308 1 0 2 6 1 0 85072 genus Allochromatium 1419 0 1 species Allochromatium vinosum 1413 1049 1 24 0 2 211 Candidatus Nitrosoglobus genus 1980513 species Candidatus Nitrosoglobus terrae 187 1630141 0 1 3 0 1 3 470 family Woeseiaceae 1738654 1738655 467 genus Woeseia 3 1 0 2 1548547 Woeseia oceani species 464 1 0 Alteromonadales order 58218 135622 105 278 1 0 19808 family Alteromonadaceae 72275 1 94 0 30 89404 genus Glaciecola 1218 0 1 1 3 0 1 300231 species Glaciecola nitratireducens 773 444 no rank 2618684 1 0 species Glaciecola sp. 4H-3-7+YE-5 444 983545 0 1 9815 genus Marinobacter 2742 10 1 93 0 0 1 330734 species 665 Marinobacter psychrophilus 0 1 1135 Marinobacter salarius species 1420917 0 1 1874317 Marinobacter salinus species 938 0 1 Marinobacter hydrocarbonoclasticus species 1524 2743 1420916 1434 species Marinobacter similis 1 0 0 1 995 species Marinobacter adhaerens 1033846 3 0 no rank 3031 83889 0 1 Marinobacter sp. BSs20148 741 species 490759 1749259 species Marinobacter sp. LQ44 1447 0 1 1671721 Marinobacter sp. CP1 843 species 0 1 261825 genus 754 Agarivorans 2 0 1 17 680279 737 species Agarivorans gilvus 1 0 1751872 Lacimicrobium genus 1067 2 0 1 74 1526571 Lacimicrobium alkaliphilum 993 species 0 1 0 1 85 10 genus 6254 Alteromonas 226 0 1 Alteromonas stellipolaris species 777 233316 0 1 species Alteromonas mediterranea 908 314275 0 1 715451 species 386 Alteromonas naphthalenivorans 287094 species Alteromonas addita 656 0 1 0 1 species 400 Alteromonas australica 589873 Alteromonas macleodii 1649 species 28108 1 0 0 3 2614992 no rank 1393 0 1 Alteromonas sp. RW2A1 556 species 1917158 1 0 1777491 species Alteromonas sp. Mac1 514 1 0 species 323 Alteromonas sp. MB-3u-76 2058133 1621534 606 genus Paraglaciecola 0 1 1 2 326544 Paraglaciecola psychrophila species 605 0 1 Pseudoalteromonadaceae 12184 family 267888 0 39 1 25 53246 12145 genus Pseudoalteromonas 270 1 0 24 166935 Pseudoalteromonas translucida 340 species 1 0 194690 2689 no rank 0 5 1 0 234831 Pseudoalteromonas sp. SM9913 386 species 1514074 Pseudoalteromonas sp. NC201 species 377 0 1 0 1 species Pseudoalteromonas sp. 13-15 593 1761891 283699 Pseudoalteromonas sp. Bsw20308 species 422 1 0 0 1 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 911 1720343 314281 420 Pseudoalteromonas tunicata species 0 1 Pseudoalteromonas agarivorans 230 species 176102 0 1 species 471 Pseudoalteromonas phenolica 161398 1 0 0 1 754 species Pseudoalteromonas atlantica 288 28107 Pseudoalteromonas espejiana species 446 1 0 1 0 43662 species Pseudoalteromonas piscicida 430 0 1 913 Pseudoalteromonas spongiae species 298657 Pseudoalteromonas nigrifaciens species 391 28109 0 1 152297 species 405 Pseudoalteromonas issachenkonii 0 1 species Pseudoalteromonas piratica 900 1348114 1 0 43657 Pseudoalteromonas luteoviolacea 1059 species 0 1 1 0 Pseudoalteromonas haloplanktis species 348 228 species Pseudoalteromonas rubra 721 43658 1 0 1 0 247523 362 species Pseudoalteromonas aliena 393 species Pseudoalteromonas arctica 394751 1 0 1 0 species Pseudoalteromonas marina 217 267375 43659 species Pseudoalteromonas tetraodonis 386 0 1 267894 family 1191 0 3 1 1 0 3 67572 Psychromonas 1191 genus 2614957 no rank 713 0 1 314282 species 713 Psychromonas sp. CNPT3 0 1 357794 species Psychromonas ingrahamii 477 1 0 0 1 7 3 family 1655 Ferrimonadaceae 267892 0 44 1 2 genus 1648 Ferrimonas 44011 1 0 44012 species 1604 Ferrimonas balearica 22 1 0 6 267893 1743 family Idiomarinaceae 1 9 0 5 Idiomarina genus 1721 135575 2 0 no rank 789 2614829 0 1 2100422 species Idiomarina sp. OT37-5b 375 1 0 2055892 species 414 Idiomarina sp. X4 0 1 536 species Idiomarina piscisalsi 1096243 0 1 Idiomarina loihiensis species 387 135577 267891 Moritellaceae 737 family 0 2 1 3 58050 735 Moritella genus 2 0 1 15 0 1 Moritella viscosa species 720 80854 213 1 0 25 267890 Shewanellaceae 16685 family 223 1 0 24 genus 16472 Shewanella 22 Shewanella marisflavi species 450 260364 1 0 1 0 Shewanella oneidensis species 585 70863 6 0 no rank 2944 196818 2029986 species 392 Shewanella sp. WE21 1 0 594 Shewanella sp. ANA-3 species 94122 1 0 0 1 351745 588 species Shewanella sp. W3-18-1 1 0 Shewanella sp. MR-4 species 589 60480 1 0 2059264 Shewanella sp. Pdp11 species 286 1 0 60481 495 Shewanella sp. MR-7 species species 424 Shewanella frigidimarina 56812 0 1 1 0 192073 Shewanella denitrificans 592 species 1 0 271097 species Shewanella sediminis 869 60478 species 1385 Shewanella amazonensis 1 0 1 0 24 species 615 Shewanella putrefaciens 0 1 70864 Shewanella pealeana 885 species 62322 Shewanella baltica species 1357 0 1 657 Shewanella piezotolerans species 404011 0 1 0 1 species 352 Shewanella bicestrii 2018305 species Shewanella halifaxensis 684 271098 0 1 species Shewanella woodyi 560 60961 0 1 359303 Shewanella loihica species 1730 1 0 species 826 Shewanella violacea 60217 0 1 93973 461 species Shewanella japonica 0 1 0 1 Shewanella psychrophila species 873 225848 Colwelliaceae family 3937 267889 9 0 1 4 6 0 8 1 Colwellia genus 3508 28228 0 3 2071 no rank 196834 0 1 species Colwellia sp. PAMC 21821 650 1816219 0 1 1816218 species Colwellia sp. PAMC 20917 523 58049 Colwellia sp. MT41 species 898 0 1 Colwellia beringensis species 474 1967665 1 0 1 0 28229 Colwellia psychrerythraea 955 species 1518149 425 genus Thalassotalea 0 6 1 2 0 1 1763536 419 species Thalassotalea crassostreae 0 1 26 4 1422 order Immundisolibacterales 1934945 1396 Immundisolibacteraceae family 1934946 3 0 51 1 2 0 6 1 1345 genus Immundisolibacter 1934947 1810504 Immundisolibacter cernigliae species 1339 0 1 33811 no rank 1851 2 0 0 1 species endosymbiont of unidentified scaly snail isolate Monju 1219 1248727 632 species gamma proteobacterium HdN1 83406 1 0 0 1 1371 245 order 643306 Enterobacterales 91347 Yersiniaceae 47199 family 1903411 38 0 1 115 0 45 1 2 1745211 genus 918 Chania 1 0 873 species Chania multitudinisentens 1639108 16 1491 1 0 613 Serratia genus 27462 species 1599 Serratia liquefaciens 614 0 1 0 1 82996 species 2847 Serratia plymuthica 1682 Serratia ficaria species 61651 1 0 0 1 species Serratia marcescens 6673 615 61652 1369 Serratia rubidaea species 1 0 28151 Serratia proteamaculans species 1098 0 1 8 0 2647522 8394 no rank Serratia sp. ATCC 39006 species 882 104623 1 0 0 1 488142 species Serratia sp. SCBI 1437 0 1 Serratia sp. AS13 species 679 768493 0 1 Serratia sp. FS14 species 1185 1327989 species 1201 Serratia sp. SSNIH1 1758196 1 0 0 1 Serratia sp. MYb239 1102 species 2033438 species 679 Serratia sp. AS12 768490 1 0 671990 Serratia sp. FGI94 species 1229 1 0 0 1 2309 Serratia fonticola species 47917 629 14409 Yersinia genus 13 0 600 1 2316 species group 1649845 3 0 0 1 367190 591 species Yersinia similis Yersinia pestis 808 species 632 0 1 1 0 917 Yersinia pseudotuberculosis species 633 1 0 Yersinia rohdei species 678 29485 0 1 29486 Yersinia ruckeri species 530 1 0 263819 1032 Yersinia aleksiciae species 0 1 species Yersinia kristensenii 666 28152 29483 Yersinia aldovae 491 species 0 1 Yersinia enterocolitica species 3004 630 0 1 1 0 631 1095 Yersinia intermedia species 1 0 species 2912 Yersinia frederiksenii 29484 0 1 2653513 no rank 1085 Yersinia sp. FDAARGOS_228 species 1085 1839800 1 0 4 0 1 76 3153 Rahnella genus 34037 0 2 2635087 2251 no rank 1442 species Rouxiella sp. ERMR1:05 1805933 0 1 0 1 Rahnella sp. Y9602 species 809 741091 0 1 826 Rahnella aquatilis species 34038 genus 34 Rouxiella 1565532 0 1 929812 genus 1108 0 1 species Gibbsiella quercinecans 1108 929813 0 1 0 2 451511 no rank 1299 87 1 0 2 Plesiomonas 1299 genus 702 703 Plesiomonas shigelloides species 1212 1 0 0 1 2489 117 521155 Enterobacteriaceae family 543 1 0 579 1350 genus 0 1 species Kluyvera intermedia 1350 61648 genus 3588 Cedecea 158483 0 9 1 2 1 0 species 3579 Cedecea neteri 158822 8 0 1 154 413496 9332 genus Cronobacter 413501 species Cronobacter muytjensii 1239 1 0 species Cronobacter condimenti 950 1163710 1 0 Cronobacter dublinensis 1107 species 413497 1 0 1 0 535744 Cronobacter universalis 1215 species Cronobacter sakazakii species 2293 28141 1 0 1 0 413503 1019 Cronobacter malonaticus species Cronobacter turicensis 1355 species 413502 0 1 590 13446 Salmonella genus 25 1 0 3 1 0 1214 species Salmonella bongori 54736 12207 Salmonella enterica species 28901 0 1 1 0 genus 231 1048757 231 Candidatus Moranella endobia species 1048758 0 1 4684 Pluralibacter genus 1330546 3 35 1 0 1 0 61647 species 2618 Pluralibacter gergoviae 1 0 [Enterobacter] lignolyticus species 2031 1334193 4 0 1 132 83654 Leclercia genus 4354 Leclercia adecarboxylata 1214 species 83655 1 0 0 2 2627398 no rank 3008 Leclercia sp. LSNIH1 species 1720 1920114 0 1 1920116 species Leclercia sp. LSNIH3 1288 1 0 13581 genus Raoultella 160674 0 1 173 3 1 0 Raoultella planticola 4636 species 575 species Raoultella ornithinolytica 8772 54291 0 1 5 55 1 0 1330547 6740 genus Kosakonia 1 0 208223 Kosakonia cowanii species 2186 1 0 Kosakonia radicincitans species 2036 283686 1 0 497725 Kosakonia oryzae 1097 species 0 1 1158459 Kosakonia sacchari species 1366 0 3672 1 22 Enterobacter genus 122574 547 9 0 15286 no rank 2608935 1 0 1560339 species Enterobacter sp. E20 1179 species 1094 Enterobacter sp. 638 399742 0 1 1 0 1914861 species 1357 Enterobacter sp. SA187 1 0 1166130 1342 species Enterobacter sp. R4-368 1196 Enterobacter sp. Crenshaw species 1977566 0 1 0 1 1158 species Enterobacter sp. HK169 1868135 0 1 species Enterobacter sp. FY-07 1244 1692238 1 0 2051905 species 1959 Enterobacter sp. CRENT-193 Enterobacter sp. ODB01 species 4757 1827481 0 1 0 12 354276 species group 103616 0 1 species Enterobacter cloacae 41755 550 1047 species Enterobacter cancerogenus 69218 1 0 0 3 2757714 21376 no rank 0 1 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 16776 2077137 2027919 species Enterobacter cloacae complex bacterium 2194 0 1 Enterobacter cloacae complex sp. ECNIH7 species 2406 1915310 1 0 species Enterobacter cloacae complex 'Hoffmann cluster IV' 3539 1812935 1 0 0 1 Enterobacter kobei species 4460 208224 299767 16213 Enterobacter ludwigii species 1 0 Enterobacter hormaechei species 9345 158836 1 5569 0 3 subspecies 2072 Enterobacter cloacae complex 'Hoffmann cluster III' 1812934 0 1 1296536 Enterobacter xiangfangensis subspecies 1704 1 0 61645 species 5881 Enterobacter asburiae 0 1 2 0 1 24 1335483 Shimwellia genus 954 0 1 563 Shimwellia blattae species 930 570 Klebsiella genus 40777 0 1497 1 10 species Klebsiella quasivariicola 2145 2026240 1 0 species Klebsiella michiganensis 3540 1134687 1 0 0 1 548 species 2452 Klebsiella aerogenes 1 0 13292 Klebsiella pneumoniae species 573 0 1 Klebsiella quasipneumoniae 2790 species 1463165 2 0 no rank 3438 2608929 1934254 Klebsiella sp. M5al species 1978 0 1 0 1 1905288 species Klebsiella sp. LTGPAF-6F 1460 0 1 244366 4125 species Klebsiella variicola 1 0 Klebsiella oxytoca species 7498 571 5 0 539 1 38768 genus Escherichia 561 1 0 species Escherichia fergusonii 1797 564 0 1 562 species 32179 Escherichia coli 1499973 Escherichia marmotae 1353 species 0 1 Escherichia albertii 2900 species 208962 0 1 1 1 0 2 223 genus Candidatus Ishikawaella 409304 Candidatus Ishikawaella capsulata species 222 168169 1 0 no rank 2715 191675 0 17 17 0 84563 2715 clade 150 genus 1906660 1 0 0 1 species 150 Candidatus Mikella endobia 1778264 7 0 84564 clade 863 0 15 1 7 genus 863 Candidatus Blochmannia 203804 no rank 481 711328 0 2 1505596 species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 118 0 1 1505597 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 363 1 0 1 0 species Candidatus Blochmannia chromaiodes 93 251542 203907 Candidatus Blochmannia floridanus 105 species 0 1 1 0 species Candidatus Blochmannia vafer 66 251535 103 Candidatus Blochmannia pennsylvanicus species 101534 0 1 0 4 clade 612 146507 0 1 108 species secondary endosymbiont of Ctenarytaina eucalypti 1199245 568987 genus Candidatus Hamiltonella 350 2 0 2 1 1 0 138072 Candidatus Hamiltonella defensa 348 species 0 1 secondary endosymbiont of Heteropsylla cubana 154 species 134287 1 0 1906657 293 genus 1778262 species Candidatus Doolittlea endobia 293 1 0 0 1 1906659 genus 126 1778263 126 Candidatus Hoaglandella endobia species 0 1 1906661 173 genus 1 0 1 0 1070130 species Candidatus Gullanella endobia 173 1682492 391 genus 0 1 1 0 1410383 species 391 Candidatus Tachikawaea gelatinosa 107 clade 199891 0 1 species secondary endosymbiont of Trabutina mannipara 107 1835721 1 0 1330545 Lelliottia 5383 genus 1 65 0 4 Lelliottia amnigena 2149 species 61646 0 1 0 1 1907578 species Lelliottia jeotgali 1188 1 0 69220 1981 species Lelliottia nimipressuralis 620 genus Shigella 7398 0 1 634 4 0 1 Shigella flexneri species 1705 623 622 2363 species Shigella dysenteriae 0 1 1 0 2629414 2696 no rank 1813821 2696 Shigella sp. PAMC 28760 species 1 0 1 0 401618 genus 138 species Candidatus Riesia pediculicola 138 401619 0 1 14 0 3484 1 genus Citrobacter 235143 544 0 1 species 3853 Citrobacter amalonaticus 35703 species Citrobacter rodentium 1340 67825 0 1 0 1 545 Citrobacter koseri species 2075 1 0 67824 Citrobacter farmeri species 1507 1344959 species group 184156 0 7 0 1 Citrobacter freundii complex sp. CFNIH2 species 1237 2066049 Citrobacter freundii species 87086 546 0 1 0 1 67827 Citrobacter werkmanii 8953 species 2077147 species Citrobacter freundii complex sp. CFNIH3 12303 0 1 2077149 species Citrobacter freundii complex sp. CFNIH9 30860 1 0 species 17253 Citrobacter braakii 57706 0 1 0 1 Citrobacter freundii complex sp. CFNIH4 species 26464 2077148 no rank 38728 2644389 0 2 0 1 1920110 1737 Citrobacter sp. CFNIH10 species 0 1 species 36991 Citrobacter sp. FDAARGOS_156 1702170 0 5 7287 no rank 36866 1 0 2066051 species 1183 Enterobacteriaceae bacterium ENNIH1 0 1 1920109 Enterobacteriaceae bacterium ENNIH2 species 1106 species Enterobacteriaceae bacterium ENNIH3 1207 1920128 1 0 0 1 891974 1386 Plautia stali symbiont species 1 0 693444 2405 Enterobacteriaceae bacterium strain FGI 57 species 1903409 25541 Erwiniaceae family 28 86 1 0 1 3 0 2 genus 1746 Buchnera 32199 1743 species Buchnera aphidicola 9 1 0 0 98 1 2 Tatumella 756 genus 82986 1 0 53336 658 species Tatumella citrea 8 1 226 0 Erwinia genus 7057 551 species Erwinia tasmaniensis 1104 338565 1 0 1 0 species 964 Erwinia pyrifoliae 79967 1373 Erwinia gerundensis species 1619313 0 1 0 1 182337 Erwinia billingiae species 1351 1 0 947 Erwinia amylovora species 552 species Candidatus Erwinia sp. ErCipseudotaxifoliae 106 1922217 1 0 1 0 no rank 986 2622719 1 0 215689 species Erwinia sp. Ejp617 986 53335 genus 13227 Pantoea 0 996 1 11 1 0 species group 1907 1654067 549 Pantoea agglomerans species 1907 0 1 1 0 1891675 species Pantoea alhagi 775 470934 Pantoea vagans species 2242 0 1 1235990 species 179 Candidatus Pantoea carbekii 0 1 0 1 species Pantoea stewartii 1274 66269 0 3 3808 no rank 2630326 592316 1334 Pantoea sp. At-9b species 0 1 1484158 Pantoea sp. PSNIH1 856 species 1 0 1 0 species Pantoea sp. PSNIH2 1618 1484157 553 species Pantoea ananatis 1360 0 1 0 1 1076550 species Pantoea rwandensis 686 2 1 1 0 51228 Wigglesworthia genus 253 0 1 Wigglesworthia glossinidia species 252 51229 2 0 2100764 genus 2416 0 1 665913 species 1318 Pantoea calida 665914 1098 species Pantoea gaviniae 0 1 20 0 1 53 Pectobacteriaceae 20699 family 1903410 0 4 1 2 71655 Brenneria genus 1116 1109412 species Brenneria goodwinii 1112 1 0 0 198 1 6 genus 7237 Pectobacterium 122277 1 0 554 Pectobacterium carotovorum 2874 species 2042057 species 1540 Pectobacterium polaris 0 1 1 0 55208 species Pectobacterium wasabiae 831 1 0 1905730 787 species Pectobacterium parmentieri 1 0 29471 species Pectobacterium atrosepticum 1007 299 1 0 6 204037 genus 8696 Dickeya 1 0 species Dickeya dianthicola 1309 204039 0 1 204042 2042 species Dickeya zeae 1 0 Dickeya fangzhongdai species 1309 1778540 0 1 species Dickeya dadantii 1300 204038 species Dickeya solani 2437 1089444 0 1 84565 3597 Sodalis genus 5 0 63 1 0 1 1486991 species Candidatus Sodalis pierantonius 1077 1 0 1239307 species 1348 Sodalis praecaptivus 63612 977 Sodalis glossinidius species 0 1 1 0 132 species Sodalis endosymbiont of Henestaris halophilus 1929246 14 1 28 0 family Hafniaceae 12280 1903412 8 0 1 610 8459 genus Edwardsiella 635 1821960 species Edwardsiella anguillarum 907 1 0 2 0 2024 no rank 2676541 0 1 species Edwardsiella sp. EA181011 1113 1578828 1650654 Edwardsiella sp. LADL05-105 911 species 1 0 0 1 636 species 1825 Edwardsiella tarda 0 1 1263550 1158 species Edwardsiella piscicida species 880 Edwardsiella ictaluri 67780 1 0 1055 species Edwardsiella hoshinae 93378 0 1 genus Hafnia 2735 568 3 1 82 0 569 1730 species Hafnia alvei 1 0 1 0 2621980 no rank 923 0 1 923 species Hafnia sp. CBA7124 1848580 2 169 1 0 genus Obesumbacterium 1058 82982 82983 889 species Obesumbacterium proteus 0 1 22 48 1 0 13041 family Morganellaceae 1903414 6 0 43 1 626 genus Xenorhabdus 3145 0 1 Xenorhabdus hominickii 542 species 351679 Xenorhabdus nematophila species 652 628 0 1 1 0 species 573 Xenorhabdus doucetiae 351671 0 1 40576 species Xenorhabdus bovienii 925 species 410 Xenorhabdus poinarii 40577 1 0 583 genus 2138 Proteus 3 1 32 0 1 0 Proteus mirabilis species 1630 584 Proteus vulgaris species 476 585 0 1 2 0 1 1 142 Arsenophonus genus 637 634113 species Arsenophonus symbiont of Lipoptena fortisetosa 141 0 1 4 26 1 0 Photorhabdus genus 2982 29487 Photorhabdus asymbiotica 1388 species 291112 1 0 1 0 574560 Photorhabdus temperata 863 species 1 0 29488 705 species Photorhabdus luminescens 2 1 29 0 581 genus 2194 Morganella 1 0 species Morganella morganii 2165 582 genus 2392 Providencia 586 4 29 1 0 species Providencia stuartii 744 588 0 1 0 1 126385 1028 species Providencia alcalifaciens 0 1 587 Providencia rettgeri species 591 1903416 721 family Budviciaceae 0 1 1 3 2 0 1 1 720 genus Pragia 82984 0 1 82985 Pragia fontium species 719 1775403 775 Nevskiales order 0 6 1 4 2 0 2689614 763 family 0 1 1 2 469322 763 genus Steroidobacter 1 0 465721 species 762 Steroidobacter denitrificans family Sinobacteraceae 6 568386 1 0 order Xanthomonadales 63987 135614 0 1 717 53 38 1 610 0 family 52627 Xanthomonadaceae 32033 83614 746 genus Luteimonas 3 1 0 2 2006110 Luteimonas sp. 100111 species 743 0 1 453 1 0 9 40323 Stenotrophomonas 19412 genus 2278 Stenotrophomonas acidaminiphila species 128780 1 0 0 4 no rank 5222 196198 1 0 species Stenotrophomonas sp. LM091 1215 1904944 Stenotrophomonas sp. KCTC 12332 species 1099 1793721 1 0 1 0 species Stenotrophomonas sp. MYb57 1547 1827305 0 1 species Stenotrophomonas sp. WZN-1 1361 2005046 species Stenotrophomonas rhizophila 1345 216778 1 0 83617 1235 Stenotrophomonas nitritireducens species 0 1 8879 species group 995085 1 0 species 8879 Stenotrophomonas maltophilia 40324 1 0 1 0 2370 genus 519 2371 species Xylella fastidiosa 519 0 1 1224 1 0 17 338 21391 genus Xanthomonas 0 1 673 Xanthomonas alfalfae species 366650 456327 species 823 Xanthomonas euvesicatoria 1 0 0 1 Xanthomonas fragariae species 480 48664 53413 535 Xanthomonas axonopodis species 0 1 1 0 species Xanthomonas oryzae 1987 347 0 1 Xanthomonas phaseoli 967 species 1985254 1 0 species 3255 Xanthomonas campestris 339 1 0 species Xanthomonas vasicola 844 56459 1 0 species Xanthomonas translucens 2173 343 species 1145 Xanthomonas perforans 442694 0 1 species group 3089 643453 2 0 346 Xanthomonas citri 2324 species 0 1 0 1 366648 765 species Xanthomonas fuscans 686 Xanthomonas albilineans species 29447 1 0 Xanthomonas sacchari species 1450 56458 0 1 1 0 56460 Xanthomonas vesicatoria 1013 species 1 0 56454 species Xanthomonas hortorum 1047 3 0 1 49 83618 genus Pseudoxanthomonas 3847 0 1 Pseudoxanthomonas suwonensis 2656 species 314722 415229 1142 species Pseudoxanthomonas spadix 1 0 0 1 87 5 Lysobacter genus 6102 68 1 0 84531 Lysobacter antibioticus 1692 species 1 0 262324 species 1234 Lysobacter gummosus 0 1 species 1470 Lysobacter capsici 435897 0 1 Lysobacter enzymogenes 1619 species 69 Rhodanobacteraceae family 10643 1775411 14 187 1 0 2 0 6 1 genus Luteibacter 1236 242605 Luteibacter rhizovicinus species 1230 242606 1 0 0 1 2233801 genus 570 1 0 2021234 Xanthomonadales bacterium D13 species 570 2 1 16 0 genus Dokdonella 1600 323413 323415 1584 species Dokdonella koreensis 1 0 4270 Dyella genus 231454 0 1 78 4 231455 species Dyella japonica 1566 1 0 1379159 Dyella jiangningensis species 1210 0 1 445710 species 1416 Dyella thiooxydans 1 0 75309 Rhodanobacter genus 1531 19 1 0 2 1 0 species Rhodanobacter denitrificans 1512 666685 2 1 4 0 70411 Frateuria 1249 genus 1245 Frateuria aurantia species 81475 0 1 1692040 Acidiferrobacterales 2187 order 6 1 43 0 2144 family Acidiferrobacteraceae 1692041 1 32 0 5 genus 1119 Sulfuricaulis 1744881 0 1 16 2 1620215 1103 Sulfuricaulis limicola species 0 1 19 1 0 2 genus Sulfurifustis 993 1692042 1 0 Sulfurifustis variabilis species 974 1675686 13 1 0 44 order Vibrionales 37058 135623 641 family Vibrionaceae 37045 1 335 0 43 genus 2508 Aliivibrio 511678 4 0 22 1 1 0 Aliivibrio fischeri species 1511 668 1 0 455 species Aliivibrio wodanis 80852 40269 520 Aliivibrio salmonicida species 1 0 genus 622 Paraphotobacterium 2042066 0 1 1 2 Paraphotobacterium marinum 621 species 1755811 1 0 657 genus Photobacterium 3465 0 1 12 4 74109 792 Photobacterium profundum species 0 1 38293 species Photobacterium damselae 1460 1 0 species 1201 Photobacterium gaetbulicola 1295392 0 1 662 genus Vibrio 29446 355 1 0 30 10471 species group 717610 10 0 0 1 691 Vibrio natriegens species 2021 655 Vibrio owensii species 696485 1 0 669 1137 Vibrio harveyi species 0 1 0 1 670 species Vibrio parahaemolyticus 1376 0 2 2315253 1102 species subgroup 0 1 species Vibrio diabolicus 776 50719 species 326 Vibrio antiquarius 150340 0 1 0 1 766224 species 511 Vibrio jasicida species Vibrio rotiferianus 493 190895 0 1 663 species Vibrio alginolyticus 1814 1 0 0 1 680 1362 species Vibrio campbellii species Vibrio gazogenes 920 687 0 1 55601 1037 species Vibrio anguillarum 0 1 0 1 Vibrio vulnificus species 2099 672 1 0 species Vibrio hyugaensis 332 1534743 666 Vibrio cholerae species 1731 0 1 1783 no rank 2614977 2 0 0 1 Vibrio sp. EJY3 species 904 1116375 species Vibrio sp. 2521-89 879 2014742 0 1 190893 1961 Vibrio coralliilyticus species 0 1 1 0 674 Vibrio mimicus 1405 species Vibrio tritonius species 635 1435069 1 0 1 0 Vibrio breoganii species 689 553239 Vibrio scophthalmi 600 species 45658 0 1 695 Vibrio tasmaniensis species 212663 1 0 0 1 1891919 788 species group 29498 species Vibrio tubiashii 788 1 0 1 0 Vibrio fluvialis species 1168 676 1 0 species 313 Vibrio qinghaiensis 2025808 0 1 52443 784 species Vibrio tapetis 29494 910 species Vibrio furnissii 1 0 28173 species Vibrio nigripulchritudo 770 1 0 Grimontia 669 genus 246861 2 16 1 0 0 1 species 653 Grimontia hollisae 673 1706369 order Cellvibrionales 12454 29 77 1 0 family 1733 Spongiibacteraceae 1706375 0 14 1 7 1 1 0 2 genus Zhongshania 472 1434050 471 species Zhongshania aliphaticivorans 1470434 1 0 2 0 1 4 Spongiibacter genus 479 630749 475 no rank 2631504 0 1 475 species Spongiibacter sp. IMCC21906 1620392 0 1 1084558 genus 768 Oceanicoccus 2 1 1 0 1 0 716816 Oceanicoccus sagamiensis species 767 5 1 29 0 1706373 family Microbulbiferaceae 3324 genus Microbulbifer 3295 48073 0 1 15 4 260552 species Microbulbifer agarilyticus 1249 0 1 0 1 252514 Microbulbifer thermotolerans 954 species 1769779 1077 Microbulbifer aggregans species 1 0 1706372 family 1566 Halieaceae 0 1 29 4 3 0 1 28 1217416 1537 genus Halioglobus 930806 662 species Halioglobus pacificus 0 1 1 0 930805 Halioglobus japonicus 847 species 12 1 104 0 family 5754 Cellvibrionaceae 1706371 2 1 6 0 475 Teredinibacter genus 2425 2426 species Teredinibacter turnerae 469 0 1 2 0 1 4 583 Agarilytica genus 2036021 1 0 1737490 Agarilytica rhodophyticola 579 species genus 701 316625 1 0 0 1 86304 701 Saccharophagus degradans species genus 971 Simiduia 447467 2 6 1 0 0 1 species Simiduia agarivorans 965 447471 4 38 1 0 10 2920 Cellvibrio genus 0 1 155077 1203 Cellvibrio japonicus species no rank 1679 2624793 2 0 species 828 Cellvibrio sp. PSBB006 1987723 1 0 1 0 1945512 851 Cellvibrio sp. PSBB023 species 10 0 118884 no rank 4574 829 clade 32036 3 0 1 0 410330 284 Calyptogena okutanii thioautotrophic gill symbiont species 1 0 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont species 383 0 1 1541743 genus 162 1 0 species Candidatus Ruthia magnifica 162 386487 0 1 198346 374 clade 0 1 Candidatus Baumannia cicadellinicola species 374 186490 0 1 349742 genus 1003 0 1 species Sedimenticola thiotaurini 1003 1543721 0 1 genus 1092 1608298 1 0 1076588 1092 species Thiolapillus brandeum genus Pseudohongiella 770 1524249 1 1 0 2 1 0 1249552 769 species Pseudohongiella spirulinae 2 0 655184 genus 506 0 1 224 species Candidatus Thioglobus autotrophicus 1705394 1 0 1427364 Candidatus Thioglobus singularis species 282 976 1 0 129 order 181984 Pseudomonadales 72274 0 1 82 42 468 25155 family Moraxellaceae 5 0 1 22 Moraxella genus 3085 475 0 1 species Moraxella catarrhalis 441 480 866 species Moraxella bovoculi 386891 1 0 Moraxella osloensis species 1315 34062 1 0 441 Moraxella ovis species 29433 1 0 4547 genus Psychrobacter 497 11 0 1 77 0 1 species Psychrobacter urativorans 382 45610 334543 species 460 Psychrobacter arcticus 0 1 261164 745 Psychrobacter alimentarius species 1 0 Psychrobacter cryohalolentis species 258 330922 0 1 196806 2625 no rank 0 6 0 1 Psychrobacter sp. PRwf-1 species 1172 349106 1720344 385 species Psychrobacter sp. AntiMn-1 0 1 571800 species Psychrobacter sp. G 233 1 0 0 1 Psychrobacter sp. P2G3 species 275 1699622 Psychrobacter sp. DAB_AL43B 230 species 1028416 1 0 species 330 Psychrobacter sp. P11G5 1699624 1 0 469 17441 Acinetobacter genus 25 142 1 0 0 1 species 652 Acinetobacter radioresistens 40216 202950 554 species 1 0 1 0 62977 Acinetobacter sp. ADP1 strain 554 708 species Acinetobacter indicus 756892 1 0 909768 species group 6194 0 5 452 species Acinetobacter lactucae 1785128 1 0 species Acinetobacter nosocomialis 633 106654 0 1 1 0 470 1949 Acinetobacter baumannii species 0 1 471 Acinetobacter calcoaceticus 1527 species 0 1 48296 species Acinetobacter pittii 1633 487316 488 Acinetobacter soli species 0 1 108981 511 Acinetobacter schindleri species 0 1 0 1 species Acinetobacter oleivorans 820 1148157 593 Acinetobacter bereziniae species 106648 0 1 1324350 Acinetobacter equi species 586 0 1 no rank 3724 196816 0 7 Acinetobacter sp. NCu2D-2 species 270 1608473 0 1 1758189 518 species Acinetobacter sp. ACNIH2 1 0 1 0 Acinetobacter sp. SWBY1 species 373 2079596 1636603 species Acinetobacter sp. ACNIH1 464 0 1 1646498 752 species Acinetobacter sp. TTH0-4 1 0 Acinetobacter sp. TGL-Y2 species 571 1407071 1 0 776 species Acinetobacter sp. LoGeW2-3 1808001 0 1 Acinetobacter haemolyticus species 456 29430 0 1 1789224 species Acinetobacter larvae 717 1 0 438 Acinetobacter johnsonii species 40214 0 1 40215 species Acinetobacter junii 858 0 1 86 1 993 0 family 155853 Pseudomonadaceae 135621 719 Oblitimonas genus 1849530 2 0 2 1 species Oblitimonas alkaliphila 717 1697053 1 0 351 subfamily 4533 0 3 3 44 1 0 4533 Azotobacter genus 352 0 1 species Azotobacter chroococcum 2707 353 354 1782 Azotobacter vinelandii species 1 0 0 5771 1 80 286 genus 149608 Pseudomonas 1788301 Pseudomonas versuta 642 species 1 0 Pseudomonas rhizosphaerae species 947 216142 0 1 0 1 157783 species Pseudomonas cremoricolorata 796 219572 Pseudomonas antarctica species 866 1 0 22422 species group 136845 0 6 76759 2973 species Pseudomonas monteilii 0 1 78327 Pseudomonas mosselii species 2110 0 1 70775 Pseudomonas plecoglossicida species 833 1 0 0 1 47885 Pseudomonas oryzihabitans 1386 species 0 1 species 12674 Pseudomonas putida 303 0 1 47880 Pseudomonas fulva 2446 species 244566 Pseudomonas lurida species 1017 0 1 1005 Pseudomonas entomophila species 312306 1 0 Pseudomonas parafulva 1509 species 157782 0 1 6 0 species group 19340 136841 0 1 287 Pseudomonas aeruginosa species 6007 53412 species 1553 Pseudomonas resinovorans 1 0 3019 species Pseudomonas citronellolis 53408 0 1 0 1 species subgroup 1774 1232139 1 0 1149133 Pseudomonas furukawaii species 1774 1 0 300 5301 species Pseudomonas mendocina 1 0 43263 Pseudomonas alcaligenes species 1686 0 30 196821 no rank 31546 0 1 Pseudomonas sp. PONIH3 982 species 1636610 2018067 species 873 Pseudomonas sp. FDAARGOS_380 0 1 1931241 Pseudomonas sp. S-6-2 species 1061 1 0 1 0 1415630 Pseudomonas sp. TKP species 712 Pseudomonas sp. HLS-6 species 851 2049589 1 0 Pseudomonas sp. SWI44 817 species 2083053 1 0 1534110 species Pseudomonas sp. DR 5-09 897 1 0 1 0 Pseudomonas sp. LH1G9 935 species 2083055 1 0 2069256 species Pseudomonas sp. XWY-1 931 Pseudomonas sp. SWI36 903 species 2083052 0 1 species Pseudomonas sp. CCOS 191 1256 1649877 0 1 1 0 1294143 species Pseudomonas sp. ATCC 13867 1500 1 0 1338689 Pseudomonas sp. JY-Q 987 species 1028989 species Pseudomonas sp. StFLB209 1261 0 1 0 1 Pseudomonas sp. Os17 species 1469 1500686 762 Pseudomonas sp. UW4 species 1207075 1 0 species 808 Pseudomonas sp. SWI6 2083051 1 0 0 1 2067572 Pseudomonas sp. NC02 species 935 69328 Pseudomonas sp. VLB120 1106 species 0 1 0 1 1309 Pseudomonas sp. LPH1 species 1898684 0 1 species Pseudomonas sp. CC6-YY-74 1229 1930532 1981174 species Pseudomonas sp. M30-35 673 0 1 1 0 1856685 Pseudomonas sp. TCU-HL1 species 1636 1 0 Pseudomonas sp. LG1D9 730 species 2083054 Pseudomonas sp. GR 6-02 941 species 1659194 0 1 0 1 1500687 Pseudomonas sp. St29 species 1264 species 1275 Pseudomonas sp. MRSN12121 1611770 1 0 1 0 1827300 634 Pseudomonas sp. MYb193 species 1 0 980 species Pseudomonas sp. FGI182 1259844 0 1 Pseudomonas sp. URMO17WK12:I11 species 1829 1283291 Pseudomonas brassicacearum 2043 species 930166 0 1 1 0 237609 Pseudomonas alkylphenolica species 1213 species 1644 Pseudomonas knackmussii 65741 0 1 species group 8098 136842 0 2 1 0 1711 species Pseudomonas fragi 296 1 0 587753 species Pseudomonas chlororaphis 6387 0 1 101564 Pseudomonas alcaliphila species 1313 136843 species group 19965 9 0 species Pseudomonas orientalis 785 76758 0 1 294 Pseudomonas fluorescens 11384 species 1 0 47879 Pseudomonas corrugata 940 species 0 1 0 1 200451 species Pseudomonas poae 647 47878 1468 species Pseudomonas azotoformans 1 0 76761 species Pseudomonas veronii 899 0 1 0 1 species 1174 Pseudomonas trivialis 200450 species 1487 Pseudomonas protegens 380021 0 1 0 1 species Pseudomonas mandelii 1181 75612 198620 species Pseudomonas koreensis 1645 0 1 0 1 1583341 1196 Pseudomonas cerasi species 1 0 species Pseudomonas silesiensis 632 1853130 0 1 237610 Pseudomonas psychrotolerans 2046 species 0 2 species group 8295 136846 1 0 7281 species subgroup 578833 316 Pseudomonas stutzeri species 7281 1 0 74829 Pseudomonas balearica species 1014 0 1 1 0 species Pseudomonas frederiksbergensis 1983 104087 0 8 species group 13674 136849 0 1 species subgroup 5812 251695 317 Pseudomonas syringae 5812 species 1 0 2539 species subgroup 251698 0 2 species Pseudomonas amygdali 1296 47877 1 0 1243 Pseudomonas savastanoi species 29438 1 0 33069 1494 Pseudomonas viridiflava species 1 0 species Pseudomonas cichorii 993 36746 1 0 1 0 251701 1495 Pseudomonas syringae group genomosp. 3 species 645 no rank 2775504 0 1 1 0 1206777 species Pseudomonas sp. Lz4W 645 0 1 46257 Pseudomonas avellanae species 696 order 55559 Pasteurellales 135625 0 1 9 30 29 0 2509 1 712 Pasteurellaceae 55550 family 3 28 1 0 2565 genus Aggregatibacter 416916 714 species Aggregatibacter actinomycetemcomitans 838 0 1 0 1 species Aggregatibacter aphrophilus 1699 732 genus 562 697331 0 1 1 0 157673 [Mannheimia] succiniciproducens 562 species 713 genus Actinobacillus 3048 0 24 1 5 708 species Actinobacillus equuli 718 0 1 1 0 716 Actinobacillus suis species 503 67854 Actinobacillus succinogenes species 726 1 0 0 1 species Actinobacillus pleuropneumoniae 1087 715 155493 genus 989 0 1 750 species Gallibacterium anatis 989 1 0 0 1 476528 3589 genus Bibersteinia trehalosi 3589 species 47735 1 0 745 Pasteurella genus 1875 0 1 6 3 1 0 754 Pasteurella dagmatis species 465 747 1404 Pasteurella multocida species 1 0 724 Haemophilus 34856 genus 16 1 0 6 Haemophilus parainfluenzae species 28125 729 0 1 1812 Haemophilus pittmaniae species 249188 1 0 730 [Haemophilus] ducreyi species 515 1 0 727 3081 Haemophilus influenzae species 1 0 1307 no rank 2609962 1 0 species Haemophilus sp. oral taxon 036 1307 712310 1 0 1462 Histophilus genus 214906 1 1 0 2 731 1461 species Histophilus somni 0 1 genus Glaesserella 1617 2094023 2 0 1 1 738 Glaesserella parasuis species 1616 1 0 4 1 12 0 Mannheimia genus 2478 75984 75985 species Mannheimia haemolytica 1162 0 1 0 1 85404 species Mannheimia varigena 662 642 no rank 2645054 1 0 1432056 species Mannheimia sp. USDA-ARS-USMARC-1261 642 0 1 subphylum 277010 68525 197 0 28221 Deltaproteobacteria class 210147 0 351 1 124 1 644 0 38 29 46226 order Myxococcales suborder 2353 224462 0 3 224464 family 2353 Kofleriaceae 3 0 19 1 2 0 1 33 2334 genus Haliangium 162027 2301 species Haliangium ochraceum 80816 1 0 8 0 7636 suborder 80812 Polyangiaceae family 6166 49 5 0 1 52 39643 Sorangium genus 4698 2 1 58 0 1 0 56 4640 Sorangium cellulosum species 0 3 1 2 50 1416 genus Chondromyces 1 0 52 Chondromyces crocatus species 1413 3 28 1 0 1055686 1470 family Sandaracinaceae genus Sandaracinus 1442 1055688 2 1 71 0 0 1 species Sandaracinus amylolyticus 1371 927083 35593 suborder 80811 26 0 Anaeromyxobacteraceae family 6925 1524215 5 0 43 1 genus Anaeromyxobacter 6882 161492 0 165 1 4 0 1 Anaeromyxobacter dehalogenans 3333 species 161493 2620896 no rank 3384 0 2 447217 species 1817 Anaeromyxobacter sp. K 0 1 404589 Anaeromyxobacter sp. Fw109-5 1567 species 1 0 39 Archangiaceae 9875 family 0 228 1 9 2 0 41 1 genus Melittangium 2712 44 1 0 2671 Melittangium boletus species 83453 2 0 1 32 42 genus Cystobacter 2478 43 species 2446 Cystobacter fuscus 0 1 47 2617 genus Archangium 0 1 33 2 1 0 48 2584 species Archangium gephyra 0 19 1 2 40 genus 1840 Stigmatella 41 Stigmatella aurantiaca 1821 species 1 0 Myxococcaceae family 17734 31 0 1 128 9 32 11752 genus Myxococcus 0 1 469 5 1297742 Myxococcus hansupus species 2159 1 0 1 0 33 Myxococcus fulvus 5096 species 34 Myxococcus xanthus 2069 species 1 0 0 1 83455 species Myxococcus stipitatus 1959 83461 Corallococcus 5854 genus 3 1 90 0 184914 Corallococcus coralloides species 3077 1 0 1 0 Myxococcus macrosporus 2687 species 35 3 0 32 1 Vulgatibacteraceae 1059 family 1524213 1027 genus Vulgatibacter 1524214 35 1 0 2 1391653 992 species Vulgatibacter incomptus 1 0 34 1 0 8 213462 Syntrophobacterales 3343 order 3 1 10 0 1108 family Syntrophobacteraceae 213465 29526 genus 1098 Syntrophobacter 2 0 7 1 species Syntrophobacter fumaroxidans 1091 119484 0 1 4 1 9 0 family 2201 Syntrophaceae 213468 0 1 637 genus 2357 0 1 2358 Desulfomonile tiedjei species 637 1 0 43773 792 genus species Syntrophus aciditrophicus 792 316277 1 0 1 0 60892 763 genus 60893 species Desulfobacca acetoxidans 763 0 1 0 1 10 4 Desulfarculales 2399 order 453227 54 1 0 3 453228 Desulfarculaceae family 2389 2 0 1 22 2335 Desulfarculus genus 453229 453230 2313 species Desulfarculus baarsii 0 1 Desulfuromonadales order 31064 69541 24 0 1 484 213421 family 10044 Desulfuromonadaceae 171 1 0 9 3 1 58 0 genus Desulfuromonas 3461 890 2614637 1818 no rank 0 1 1823759 Desulfuromonas sp. DDH964 species 1818 1 0 1585 species Desulfuromonas soudanensis 1603606 0 1 18 genus Pelobacter 6412 5 374 1 0 0 1 species 2182 Pelobacter propionicus 29543 29542 Pelobacter acetylenicus species 983 0 1 2620299 985 no rank 1 0 1842532 985 Pelobacter sp. SFB93 species 0 1 0 1 species 1888 Pelobacter carbinolicus 19 14 173 1 0 213422 family 20536 Geobacteraceae 19047 Geobacter genus 28231 11 0 1 282 2627627 5685 no rank 2 0 1 0 443144 3054 Geobacter sp. M21 species 1 0 Geobacter sp. M18 2631 species 443143 1 0 345632 species 1801 Geobacter pickeringii species Geobacter lovleyi 2031 313985 1 0 351604 Geobacter uraniireducens species 1467 0 1 35554 Geobacter sulfurreducens species 1498 0 1 0 1 1203471 Geobacter daltonii species 1241 species Geobacter anodireducens 1685 1340425 0 1 0 1 28232 Geobacter metallireducens species 1553 225194 1804 Geobacter bemidjiensis species 0 1 2 1 14 0 1316 genus Geoalkalibacter 392332 Geoalkalibacter subterraneus species 1302 483547 0 1 4 0 1100 order 213113 1100 family Desulfurellaceae 117942 4 1 10 0 0 1 3 2 Desulfurella genus 494 33001 0 1 Desulfurella acetivorans species 491 33002 1 0 genus 596 84404 84405 species 596 Hippea maritima 1 0 1 517 0 26 Desulfovibrionales order 113528 213115 0 234 1 18 194924 Desulfovibrionaceae family 108482 Pseudodesulfovibrio genus 6572 2035811 1 54 0 4 57320 species 1093 Pseudodesulfovibrio profundus 1 0 1 0 species 3087 Pseudodesulfovibrio indicus 1716143 1 0 182210 species Pseudodesulfovibrio aespoeensis 2338 1361 genus 2794998 0 1 1 0 species Desulfovibrio salexigens 1361 880 626 genus Lawsonia 41707 7 1 0 2 29546 Lawsonia intracellularis 619 species 1 0 0 1 246 9 872 genus Desulfovibrio 97946 0 1 2593640 no rank 1635 1 0 1635 species Desulfovibrio sp. G11 631220 1725232 Candidatus Desulfovibrio trichonymphae 732 species 1 0 1 0 Desulfovibrio fairfieldensis species 3413 44742 0 1 58180 species Desulfovibrio alaskensis 1913 876 5064 species Desulfovibrio desulfuricans 0 1 Desulfovibrio vulgaris species 6530 881 0 1 1 0 species 75593 Desulfovibrio piger 901 1 0 Desulfovibrio magneticus species 2820 184917 0 1 2582840 genus 1743 0 1 873 1743 species Desulfovibrio africanus 4 1 69 0 213116 family 4002 Desulfomicrobiaceae 1 17 0 3 898 Desulfomicrobium 3933 genus 132132 Desulfomicrobium orale species 1900 1 0 0 1 899 2016 species Desulfomicrobium baculatum 7 1 0 3 213117 527 family Desulfohalobiaceae 45662 Desulfohalobium 520 genus 0 6 1 2 Desulfohalobium retbaense species 514 45663 0 1 19 1 91 0 Desulfobacterales order 12136 213118 40 1 0 9 213119 Desulfobacteraceae family 6656 2 0 1 7 2295 Desulfobacterium genus 1437 0 1 2296 species Desulfobacterium autotrophicum 1430 0 1 731 genus 28222 0 1 28223 species Desulfobacula toluolica 731 3 0 1 17 genus Desulfococcus 3196 896 0 1 species Desulfococcus multivorans 1549 897 181663 species Desulfococcus oleovorans 1630 1 0 10 1 0 2 Desulfatibacillum genus 1252 218207 259354 1242 Desulfatibacillum alkenivorans species 1 0 family Desulfobulbaceae 5389 213121 9 1 18 0 1 5 0 2 53318 genus Desulfocapsa 988 1 0 65555 983 species Desulfocapsa sulfexigens 0 1 1 2 109168 Desulfotalea genus 955 0 1 954 species Desulfotalea psychrophila 84980 427922 Desulfurivibrio 1537 genus 0 1 47 2 0 1 427923 1490 Desulfurivibrio alkaliphilus species 893 Desulfobulbus genus 1891 0 2 1 2 0 1 1986146 species Desulfobulbus sp. ORNL 1889 0 1 212 73 66863 Epsilonproteobacteria class 29547 0 3 1 5 235899 order Nautiliales 1602 660 family 2795691 0 2 269258 genus 660 Nitratiruptor 0 1 3 2 0 1 2624044 no rank 657 387092 Nitratiruptor sp. SB155-2 657 species 1 0 939 family 224467 0 2 2 8 1 0 Nautilia genus 939 191291 Nautilia profundicola species 931 244787 1 0 0 1 1840 67 65049 order Campylobacterales 213849 2368 family 2771472 0 5 2 1 17 0 269260 Nitratifractor genus 855 0 1 269261 838 Nitratifractor salsuginis species genus 1513 Sulfurovum 265570 3 1 1 0 206403 species Sulfurovum lithotrophicum 687 1 0 1 0 no rank 825 2646778 0 1 387093 species 825 Sulfurovum sp. NBC37-1 1197 family 2771471 5 0 0 1 1 2 genus 348 Sulfuricurvum 286130 0 1 148813 Sulfuricurvum kujiense 347 species 3 0 1 9 Sulfurimonas 849 genus 202746 0 1 species 330 Sulfurimonas denitrificans 39766 0 1 202747 Sulfurimonas autotrophica species 510 15 8 1 0 72293 family 6108 Helicobacteraceae 209 5553 Helicobacter genus 12 1 18 0 1 0 37372 species Helicobacter bilis 309 0 1 210 species Helicobacter pylori 2382 0 1 138563 531 Helicobacter cetorum species 213 563 Helicobacter cinaedi species 1 0 1 0 species 176 Helicobacter felis 214 1591088 Helicobacter himalayensis species 304 0 1 species Helicobacter mustelae 208 217 1 0 1 0 species Helicobacter acinonychis 70 212 32025 species Helicobacter hepaticus 352 1 0 2593540 no rank 342 0 1 1 0 species Helicobacter sp. MIT 01-6242 342 222136 1 0 76936 species Helicobacter typhlonius 298 Wolinella genus 547 843 0 1 1 2 1 0 species Wolinella succinogenes 546 844 72294 family Campylobacteraceae 53536 41 1 5221 0 2321108 no rank 4200 5 0 genus 1054 2321187 0 1 1054 species Arcobacter sp. LPB0137 1850254 1 0 no rank 973 2321207 1 0 944547 Arcobacter sp. L 973 species 0 1 0 1 43 3 Arcobacter genus 2173 28196 species Arcobacter butzleri 1073 28197 1 0 0 1 species Arcobacter nitrofigilis 1057 28199 3925 genus Sulfurospirillum 57665 56 1 0 9 Sulfurospirillum deleyianum 398 species 65553 0 1 321 Sulfurospirillum cavolei species 366522 0 1 Sulfurospirillum multivorans 787 species 66821 1 0 0 3 2618290 no rank 1583 1 0 1581011 575 Sulfurospirillum sp. UCH001 species Sulfurospirillum sp. SL2-1 368 species 1986224 1 0 1 0 Sulfurospirillum sp. JPD-1 species 640 220622 1 0 Sulfurospirillum halorespirans 392 species 194424 0 1 species 388 Sulfurospirillum barnesii 44674 26 1 410 0 194 genus Campylobacter 40190 1244531 species Campylobacter iguaniorum 593 0 1 0 1 species Campylobacter fetus 637 196 550 species Campylobacter ureolyticus 827 1 0 1 0 488546 species Campylobacter peloridis 644 species Campylobacter volucris 396 1031542 0 1 206 624 Campylobacter sputorum species 0 1 0 1 species 680 Campylobacter concisus 199 species 4535 Campylobacter jejuni 197 1 0 species Campylobacter lanienae 1610 75658 0 1 0 1 201 1058 species Campylobacter lari 0 1 species 810 Campylobacter insulaenigrae 260714 1 0 374106 species Campylobacter cuniculorum 406 1 0 species Campylobacter avium 271 522485 1 0 species Campylobacter hyointestinalis 325 198 497724 Campylobacter subantarcticus species 605 1 0 1965231 Campylobacter pinnipediorum species 868 0 1 0 1 28898 Campylobacter helveticus species 259 2593542 1454 no rank 4 0 1500960 Campylobacter sp. RM16704 species 436 0 1 1 0 1660074 species Campylobacter sp. RM8964 312 301 Campylobacter sp. RM12175 species 1660076 0 1 0 1 1660073 405 species Campylobacter sp. RM6137 824 Campylobacter gracilis species 465 0 1 195 22130 species Campylobacter coli 1 0 0 1 species Campylobacter hominis 368 76517 0 1 200 Campylobacter curvus species 492 349 947 1 0 356930 class Betaproteobacteria 28216 206389 19160 order Rhodocyclales 0 1 355 22 0 21 1 3 2008795 Azonexaceae 1088 family 1067 genus Dechloromonas 73029 6 1 0 2 259537 1061 Dechloromonas aromatica species 0 1 family Rhodocyclaceae 5122 75787 0 1 98 6 0 1 19 2 genus 1518 Aromatoleum 551759 0 1 1499 species Aromatoleum aromaticum 551760 2 77 1 0 Azospira genus 2270 146937 146939 Azospira oryzae species 2193 1 0 0 1 1236 no rank 75788 Rhodocyclaceae bacterium species 1236 1898103 0 1 2008794 12595 family Zoogloeaceae 12 0 1 427 6 202 1 0 7327 genus Thauera 33057 1134435 species 1694 Thauera humireducens 0 1 59405 Thauera aromatica 1165 species 0 1 96773 Thauera chlorobenzoica 1081 species 1 0 no rank 3185 2609274 0 2 2005884 species Thauera sp. K11 1718 0 1 Thauera sp. MZ1T 1467 species 85643 1 0 1 190 0 5 12960 genus Azoarcus 4841 0 1 species Azoarcus sp. SY39 994 2067960 1 0 418699 species Azoarcus olearius 972 no rank 2685 2629479 2 0 0 1 198107 species Azoarcus sp. CIB 1354 0 1 748247 1331 Azoarcus sp. KH32C species 33809 no rank 1383 2 0 0 1 species 170 beta proteobacterium CB 543913 1 0 species Betaproteobacteria bacterium GR16-43 1213 1904640 0 11 119066 no rank 2163 327159 995 Candidatus Accumulibacter genus 2 19 1 0 327160 Candidatus Accumulibacter phosphatis 976 species 0 1 189384 27 genus 0 1 1 0 189385 species 27 Candidatus Tremblaya princeps genus 57 1301080 0 1 species Candidatus Nasuia deltocephalinicola 57 1160784 0 1 0 1 4 6 1013 Kinetoplastibacterium genus 33055 994696 Candidatus Kinetoplastibacterium oncopeltii 113 species 1 0 994695 species 165 Candidatus Kinetoplastibacterium galatii 1 0 0 1 species Candidatus Kinetoplastibacterium desouzaii 248 994692 species 294 Candidatus Kinetoplastibacterium crithidii 33056 1 0 233181 species Kinetoplastibacterium blastocrithidii 189 1 0 1381133 genus 71 1 0 0 1 species Candidatus Profftella armatura 71 669502 0 1 3231 234 80840 order 285601 Burkholderiales 0 2 no rank 1540 80841 1469502 Burkholderiales bacterium GJ-E10 species 613 0 1 1 0 1834205 927 Burkholderiales bacterium YL45 species 80864 Comamonadaceae 72325 family 1303 1 0 59 2 15 1 0 genus Ramlibacter 3245 174951 1 0 species Ramlibacter tataouinensis 3230 94132 201096 genus 2213 Alicycliphilus 23 1 0 2 179636 species 2190 Alicycliphilus denitrificans 1 0 0 1 522 9 12916 Acidovorax genus 12057 1 0 species 1058 Acidovorax sp. NA3 553814 1 0 1718 species Acidovorax avenae 80867 1 0 80869 1375 Acidovorax citrulli species no rank 6211 2684926 4 0 Acidovorax sp. RAC01 species 1864 1842533 1 0 1858609 Acidovorax sp. T1 species 1275 0 1 1660 Acidovorax sp. KKS102 species 358220 1 0 1412 Acidovorax sp. JS42 species 232721 0 1 721785 1173 species Acidovorax ebreus 0 1 0 1 20 2 Simplicispira 1533 genus 352450 Simplicispira sp. SC1-8 1513 species 2109915 0 1 0 2 1996 genus 2490452 Comamonadaceae bacterium B1 species 1140 1458426 1 0 1 0 species 856 Comamonadaceae bacterium A1 1458425 genus 5552 Rhodoferax 28065 5 0 84 1 1 0 species 1388 Rhodoferax antarcticus 81479 1 0 192843 1218 species Rhodoferax ferrireducens 0 1 species 1823 Rhodoferax koreense 1842727 1484693 1039 Rhodoferax saidenbachensis species 0 1 80865 Delftia genus 10700 0 336 1 5 species Delftia acidovorans 2468 80866 1 0 no rank 5376 2613839 2 0 1 0 species Delftia sp. Cs1-4 2692 742013 1920191 species Delftia sp. HK171 2684 1 0 0 1 180282 species Delftia tsuruhatensis 2520 2 10 1 0 Diaphorobacter 1395 genus 238749 Diaphorobacter polyhydroxybutyrativorans 1385 species 1546149 1 0 0 1 108 4 genus Hydrogenophaga 4371 47420 Hydrogenophaga crassostreae 885 species 1763535 0 1 2610897 no rank 3378 0 2 0 1 1842537 species Hydrogenophaga sp. RAC07 1489 Hydrogenophaga sp. PBC species 1889 795665 0 1 1 245 0 5 Variovorax 9459 genus 34072 436515 species Variovorax boronicumulans 1900 1 0 0 1 Variovorax paradoxus species 4341 34073 2973 no rank 663243 2 0 1 0 species 1999 Variovorax sp. PMC12 2126319 1795631 974 Variovorax sp. PAMC 28711 species 1 0 219181 Ottowia 2949 genus 3 1 45 0 1262 no rank 2645081 1 0 species Ottowia sp. oral taxon 894 1262 1658672 1 0 2109914 Ottowia sp. KADR8-3 species 1642 0 1 1 53 0 2 genus 1505 Melaminivora 1649468 no rank 1452 2641902 1 0 Melaminivora sp. SC2-9 species 1452 2109913 1 0 genus 1504 2678886 0 1 2116657 Melaminivora sp. SC2-7 1504 species 1 0 2 8 1 0 Verminephrobacter genus 1175 364316 Verminephrobacter eiseniae 1167 species 364317 0 1 283 genus 6366 Comamonas 4 0 1 29 Comamonas kerstersii species 1414 225992 1 0 1 0 species Comamonas serinivorans 1514 1082851 1 0 species 3409 Comamonas testosteroni 285 1436289 622 Candidatus Symbiobacter genus 0 2 1 2 1436290 species 620 Candidatus Symbiobacter mobilis 1 0 3 0 1 12 Polaromonas genus 2604 52972 1 0 216465 species 1377 Polaromonas naphthalenivorans 2638319 no rank 1215 1 0 1215 Polaromonas sp. JS666 species 296591 1 0 3 0 8 1 Limnohabitans genus 1776 665874 0 2 2626134 no rank 1768 0 1 1678128 species Limnohabitans sp. 63ED37-2 967 0 1 1678129 801 species Limnohabitans sp. 103DPR2 42 0 1 388 506 family 55061 Alcaligenaceae 222 20542 Achromobacter genus 6 782 1 0 1 0 32002 species 4357 Achromobacter denitrificans 217203 species Achromobacter spanius 3396 0 1 species Achromobacter xylosoxidans 8005 85698 0 1 0 1 species 1770 Achromobacter insolitus 217204 0 1 2232 no rank 2626865 1 0 1758194 species Achromobacter sp. AONIH1 2232 29574 Taylorella genus 643 0 1 1 3 0 1 29575 species 333 Taylorella equigenitalis 309 Taylorella asinigenitalis species 84590 1 0 2 0 1 2 340 genus Paenalcaligenes 1100891 0 1 643674 species Paenalcaligenes hominis 338 0 1 18 2 Alcaligenes 2068 genus 507 0 1 511 Alcaligenes faecalis species 2050 Castellaniella 1757 genus 359336 2 96 1 0 75697 1661 Castellaniella defragrans species 1 0 0 1 genus 853 90243 853 Oligella urethralis species 90245 1 0 1 910 0 17 517 Bordetella 23699 genus Bordetella flabilis 1540 species 463014 1 0 Bordetella bronchialis species 1566 463025 0 1 1341 species Bordetella genomosp. 9 1416803 0 1 1 0 1420 species Bordetella genomosp. 6 463024 2630031 no rank 1338 1 0 1697043 species Bordetella sp. H567 1338 0 1 519 Bordetella parapertussis species 1398 1 0 1682 Bordetella hinzii species 103855 1 0 0 1 1362 species Bordetella genomosp. 13 463040 species Bordetella holmesii 683 35814 1 0 Bordetella petrii species 1351 94624 0 1 Bordetella pseudohinzii species 1610 1331258 0 1 1 0 521 Bordetella avium 771 species 1 0 518 Bordetella bronchiseptica species 2671 Bordetella genomosp. 8 1265 species 1416806 0 1 520 Bordetella pertussis species 1097 1 0 Bordetella trematum species 1694 123899 0 1 2 0 1 1 305976 Pusillimonas genus 708 2640016 no rank 707 0 1 0 1 1007105 707 Pusillimonas sp. T7-7 species 1 0 genus 652 1472344 Basilea psittacipulmonis 652 species 1472345 1 0 1 41 0 2 1921582 genus 1758 Orrella Orrella dioscoreae species 1717 1851544 0 1 0 5 1 3 Advenella 1653 genus 290425 1 0 species 865 Advenella mimigardefordensis 302406 species Advenella kashmirensis 783 310575 0 1 17 0 224471 no rank 15901 2 107 1 0 212743 Rhizobacter genus 1799 946333 species 1692 Rhizobacter gummiphilus 1 0 0 1 78 2 genus Rubrivivax 2517 28067 Rubrivivax gelatinosus 2439 species 28068 1 0 2 38 1 0 genus 1532 Leptothrix 88 34029 species Leptothrix cholodnii 1494 0 1 genus 1972 Mitsuaria 65047 1 108 0 2 no rank 1864 2648776 1 0 1864 species Mitsuaria sp. 7 1658665 1 0 1962 Roseateles genus 93681 0 1 77 2 Roseateles depolymerans 1885 species 76731 1 0 0 1 species [Polyangium] brachysporum 1397 413882 2 0 23 1 32012 Thiomonas 1883 genus 1 0 Thiomonas intermedia 1860 species 926 2 50 1 0 genus 1537 Paucibacter 318147 1 0 2642959 1487 no rank Paucibacter sp. KCTC 42545 species 1487 1768242 1 0 Methylibium genus 1302 316612 0 1 17 2 0 1 1285 Methylibium petroleiphilum species 105560 0 1 334 29 75682 family Oxalobacteraceae 33759 846 Oxalobacter genus 971 1 1 0 2 970 species Oxalobacter formigenes 847 1 0 303379 Herminiimonas genus 988 1 45 0 3 204773 Herminiimonas arsenicoxydans species 514 0 1 1 0 1809410 Herminiimonas arsenitoxidans species 429 Massilia genus 9422 149698 6 1 214 0 1 0 Massilia sp. B2 species 1433 2045208 0 1 1141883 species 1536 Massilia putida 2072590 Massilia sp. ZMN-3 species 2689 1 0 no rank 3550 2609279 0 2 0 1 1707785 1552 species Massilia sp. WG5 species 1998 Massilia sp. NR 4-1 1678028 0 1 Janthinobacterium genus 7519 29580 0 1 88 7 1 0 species Janthinobacterium agaricidamnosum 1406 55508 4 0 4203 no rank 2610881 1 0 423 species Janthinobacterium sp. B9-8 1236179 1938606 1280 Janthinobacterium sp. LM6 species 1 0 1 0 375286 614 species Janthinobacterium sp. Marseille 1 0 1644131 Janthinobacterium sp. 1_2014MBL_MicDiv 1886 species 1 0 1822 species Janthinobacterium svalbardensis 368607 963 9244 Herbaspirillum genus 1 314 0 6 80842 species Herbaspirillum rubrisubalbicans 1984 1 0 1 0 92645 Herbaspirillum frisingense 2097 species 1 0 964 2206 species Herbaspirillum seropedicae Herbaspirillum hiltneri species 1548 341045 1 0 0 1 2624150 1095 no rank 1 0 2025949 1095 Herbaspirillum sp. meg3 species 202907 5281 genus Collimonas 4 0 100 1 species 1506 Collimonas fungivorans 158899 0 1 0 1 Collimonas arenae 2056 species 279058 Collimonas pratensis species 1619 279113 0 1 119060 103784 family Burkholderiaceae 0 730 1 84 4 2 1 0 44013 genus Polynucleobacter 1150 1 0 576610 Polynucleobacter necessarius species 441 421 species Polynucleobacter asymbioticus 576611 1 0 1835254 Polynucleobacter duraquae species 286 1 0 10 155 1 0 genus 7917 Pandoraea 93217 93218 species 1283 Pandoraea apista 1 0 656179 species 789 Pandoraea faecigallinarum 1 0 0 1 species 763 Pandoraea sputorum 93222 Pandoraea norimbergensis 949 species 93219 1 0 0 1 species Pandoraea vervacti 671 656178 0 1 573737 773 Pandoraea oxalativorans species 1 0 93220 Pandoraea pnomenusa 905 species 93221 803 species Pandoraea pulmonicola 0 1 1 0 445709 826 Pandoraea thiooxydans species 0 1 2571159 513 genus 412963 species Paraburkholderia rhizoxinica 513 0 1 48736 11599 genus Ralstonia 264 1 0 5 1 0 305 species Ralstonia solanacearum 5199 1 0 Ralstonia insidiosa species 1616 190721 329 Ralstonia pickettii 2999 species 0 1 0 1 105219 species Ralstonia mannitolilytica 1521 1 236 0 12 Paraburkholderia 12875 genus 1822464 1 0 1365 species Paraburkholderia phytofirmans 261302 0 1 no rank 847 2615204 847 species Paraburkholderia sp. SOS3 1926494 1 0 1 0 948107 Paraburkholderia sprentiae species 1132 Paraburkholderia hospita 1201 species 169430 0 1 1 0 Paraburkholderia caribensis 1645 species 75105 1 0 species Paraburkholderia aromaticivorans 1456 2026199 1 0 311230 Paraburkholderia terrae species 939 0 1 36873 Paraburkholderia xenovorans 1014 species 1 0 Paraburkholderia fungorum 996 species 134537 252970 Paraburkholderia phenoliruptrix species 907 0 1 148447 species Paraburkholderia phymatum 1137 1 0 32008 genus Burkholderia 52382 1 2479 0 41 1337 species Burkholderia plantarii 41899 1 0 7 0 111527 6142 species group 1 0 species Burkholderia sp. MSMB617WGS 455 1637831 Burkholderia thailandensis 1316 species 57975 0 1 1 0 species Burkholderia sp. MSMB0852 618 1637841 428 species Burkholderia mallei 13373 0 1 0 1 28450 1699 species Burkholderia pseudomallei 1637837 Burkholderia sp. MSMB0266 species 602 0 1 1 0 1024 species Burkholderia oklahomensis 342113 87882 species group 27656 0 19 1 0 Burkholderia stabilis species 1101 95485 758 Burkholderia pseudomultivorans species 1207504 0 1 488446 Burkholderia latens species 633 0 1 482957 species Burkholderia lata 4092 0 1 Burkholderia ubonensis 2530 species 101571 0 1 0 1 60550 species Burkholderia pyrrocinia 538 1 0 488731 Burkholderia seminalis species 637 488732 species Burkholderia diffusa 552 1 0 Burkholderia territorii species 443 1503055 1 0 0 1 292 species Burkholderia cepacia 4336 1 0 species 1965 Burkholderia multivorans 87883 1503054 Burkholderia stagnalis species 742 0 1 265293 [Pseudomonas] mesoacidophila species 854 1 0 1 0 species Burkholderia metallica 782 488729 152480 Burkholderia ambifaria species 980 1 0 species Burkholderia cenocepacia 3986 95486 1 0 152500 547 species Burkholderia dolosa 0 1 1 0 488447 890 Burkholderia contaminans species 60552 1290 Burkholderia vietnamiensis species 1 0 2613784 9663 no rank 11 0 640512 Burkholderia sp. CCGE1003 species 1114 0 1 1468409 Burkholderia sp. 2002721687 597 species 1 0 1 0 870 Burkholderia sp. KJ006 species 416344 1 0 700 species Burkholderia sp. Bp7605 1740163 0 1 species Burkholderia sp. PAMC 28687 575 1795874 0 1 Burkholderia sp. PAMC 26561 species 497 1795043 species Burkholderia sp. CCGE1001 1169 640510 1 0 1678678 Burkholderia sp. HB1 species 1248 1 0 758796 Burkholderia sp. RPE67 species 1181 1 0 1 0 1740162 Burkholderia sp. Bp5365 species 582 1 0 Burkholderia sp. YI23 species 1130 1097668 1 0 337 species 2370 Burkholderia glumae 1 0 Burkholderia gladioli species 2735 28095 9 0 670 1 106589 genus 15658 Cupriavidus 248026 Cupriavidus pinatubonensis species 1220 0 1 species Cupriavidus necator 2809 106590 0 1 0 2 2640874 no rank 4453 1 0 876364 species Cupriavidus sp. USMAA2-4 2376 Cupriavidus sp. USMAHM13 species 2077 1389192 0 1 82541 1282 species Cupriavidus gilardii 1 0 1411 species Cupriavidus metallidurans 119219 0 1 0 1 species Cupriavidus basilensis 1649 68895 Cupriavidus sp. USMAA1020 2164 species 367825 1 0 0 1 1827195 genus 960 758793 species 960 Burkholderia sp. RPE64 0 1 206351 32126 Neisseriales order 35 1 481 0 1499392 Chromobacteriaceae family 14606 13 1 228 0 2 16 1 0 genus 973 Jeongeupia 885864 2619593 957 no rank 0 1 1906741 Jeongeupia sp. USM3 species 957 0 1 4 0 90153 7811 no rank 7811 genus Chromobacterium 535 232 1 0 4 1 0 species 2379 Chromobacterium violaceum 536 1 0 Chromobacterium vaccinii species 3159 1108595 0 1 2641838 2041 no rank 2041 Chromobacterium sp. ATCC 53434 species 2059672 1 0 2 1 17 0 Aquaspirillum 1652 genus 187 1 0 2620219 no rank 1635 0 1 species Aquaspirillum sp. LM1 1635 1938604 2 0 1 46 168470 1538 genus Laribacter 1 0 species Laribacter hongkongensis 1492 168471 568394 Pseudogulbenkiania genus 2404 0 24 1 2 2380 no rank 2642558 0 1 0 1 Pseudogulbenkiania sp. NH8B species 2380 748280 481 17039 family Neisseriaceae 21 159 1 0 71 genus 510 1 0 0 1 species Simonsiella muelleri 510 72 421605 682 no rank 1 0 species 682 Neisseriaceae bacterium DSM 100970 2052837 1 0 2 2 1 0 genus Eikenella 1180 538 species 1178 Eikenella corrodens 539 0 1 3 0 1 53 1611 genus Vitreoscilla 59 1 0 63 species 1008 Vitreoscilla filiformis no rank 550 2627922 1 0 1 0 96942 species 550 Vitreoscilla sp. C1 0 1 551 genus 1193515 551 Snodgrassella alvi species 1196083 1 0 genus 12346 Neisseria 482 12 0 1 222 2398 species Neisseria meningitidis 487 1 0 1 0 488 Neisseria mucosa 1167 species 0 2 2162 no rank 2623750 1 0 Neisseria sp. 10022 911 species 1853276 655307 species Neisseria sp. KEM232 1251 1 0 326523 Neisseria zoodegmatis 1063 species 0 1 0 1 1853278 species 1048 Neisseria sp. 10023 0 1 495 Neisseria elongata species 669 28091 Neisseria weaveri species 501 0 1 0 1 485 Neisseria gonorrhoeae species 676 1 0 486 Neisseria lactamica species 1221 490 Neisseria sicca species 1219 1 0 32003 15550 Nitrosomonadales order 155 1 0 44 5 0 1 55 2208 Gallionellaceae family 90627 2 1 12 0 1053 genus Sideroxydans 314343 species 1041 Sideroxydans lithotrophicus 63745 1 0 1 3 0 2 Gallionella genus 1100 96 1 0 370405 Gallionella capsiferriformans 1097 species 206379 Nitrosomonadaceae 4423 family 0 19 1 12 35798 1445 genus Nitrosospira 4 0 1 6 species 372 Nitrosospira multiformis 1231 0 1 1 0 species Nitrosospira briensis 574 35799 0 1 species Nitrosospira lacus 493 1288494 2959 genus Nitrosomonas 914 7 1 16 0 1 0 Nitrosomonas ureae 626 species 44577 0 1 species Nitrosomonas eutropha 360 916 1 0 503 Nitrosomonas communis species 44574 2 0 no rank 986 2609265 261292 Nitrosomonas sp. Is79A3 species 370 1 0 1 0 153948 Nitrosomonas sp. AL212 species 616 0 1 915 species Nitrosomonas europaea 468 0 4 family 1688 2772226 2 0 1 25 Sulfuricella 773 genus 935200 649841 748 species Sulfuricella denitrificans 0 1 1778653 Sulfuriferula 915 genus 0 1 5 2 0 1 2637784 910 no rank 0 1 910 Sulfuriferula sp. AH1 species 1985873 32011 3879 family Methylophilaceae 0 1 13 14 genus Methylovorus 1545 81682 3 16 1 0 752 species Methylovorus glucosotrophus 266009 1 0 no rank 777 2634027 1 0 Methylovorus sp. MP688 species 777 887061 0 1 3 1 1 0 349 Candidatus Methylopumilus genus 1679002 1581680 Candidatus Methylopumilus turicensis species 186 1 0 1 0 1581557 162 species Candidatus Methylopumilus planktonicus Methylotenera genus 895 359407 1 6 0 3 359408 Methylotenera mobilis 377 species 0 1 0 1 1055487 species Methylotenera versatilis 512 404 Methylobacillus 661 genus 1 12 0 2 649 species Methylobacillus flagellatus 405 0 1 1 3 0 2 16 genus Methylophilus 416 413 no rank 2630143 1 0 0 1 1662285 Methylophilus sp. TWE2 species 413 102 1 0 5 Sterolibacteriaceae family 2565 2008793 2 0 7 1 378210 genus 978 Methyloversatilis 971 no rank 2639971 1 0 0 1 1842540 Methyloversatilis sp. RAC08 species 971 1054211 1485 genus Sulfuritalea 2 0 1 11 0 1 species Sulfuritalea hydrogenivorans 1474 748811 3 0 11 1 2008790 Thiobacillaceae family 632 919 Thiobacillus genus 621 1 12 0 2 36861 609 Thiobacillus denitrificans species 1 0 28211 class 409731 Alphaproteobacteria 555 1649 1 0 0 133 1 20 204458 19162 order Caulobacterales 0 272 1 19 Caulobacteraceae 19029 family 76892 75 Caulobacter 8888 genus 0 121 1 6 1 0 Caulobacter segnis species 1367 88688 155892 Caulobacter vibrioides 2528 species 0 1 2648921 2030 no rank 1 0 0 1 Caulobacter sp. K31 species 2030 366602 1 0 Caulobacter mirabilis species 1642 69666 1 0 69395 Caulobacter henricii 1200 species 76890 1048 Asticcacaulis genus 17 1 0 2 0 1 78587 Asticcacaulis excentricus 1031 species 1 0 81440 610 no rank 0 1 1759059 Caulobacteraceae bacterium OTSz_A_272 species 610 genus Brevundimonas 6770 41275 0 241 1 7 74313 1086 species Brevundimonas subvibrioides 1 0 3 0 2622653 3139 no rank 1532555 Brevundimonas sp. DS20 901 species 0 1 1827469 species Brevundimonas sp. GW460-12-10-14-LB2 1105 0 1 1938605 species 1133 Brevundimonas sp. LM2 0 1 Brevundimonas vesicularis 1076 species 41276 1 0 species 1228 Brevundimonas naejangsanensis 588932 0 1 20 Phenylobacterium 1441 genus 2 3 1 0 0 1 1438 species Phenylobacterium zucineum 284016 1 77 0 52 766 order Rickettsiales 8886 family 147 Candidatus Midichloriaceae 1328881 0 3 1 2 411566 144 genus 0 1 Candidatus Midichloria mitochondrii species 144 234827 0 1 775 4409 family Rickettsiaceae 27 9 1 0 0 1 2115980 genus 374 1 0 374 species Candidatus Phycorickettsia trachydisci 2115978 33988 tribe 4026 0 25 780 Rickettsia 3238 genus 23 0 1 310 2 0 species group 509 1129742 0 1 33990 Rickettsia bellii species 324 0 1 Rickettsia canadensis 185 species 788 0 17 114277 1822 species group 0 1 Rickettsia japonica 24 species 35790 1 0 35791 55 species Rickettsia massiliae 109232 136 species Rickettsia monacensis 0 1 1 0 783 32 species Rickettsia rickettsii 35794 58 Rickettsia slovaca species 1 0 0 1 786 species Rickettsia akari 239 1 0 species 305 Rickettsia felis 42862 1 0 species Rickettsia africae 83 35788 1 0 33992 species 77 Rickettsia rhipicephali 0 1 Rickettsia conorii 21 species 781 Rickettsia heilongjiangensis species 8 226665 0 1 1 0 129 Rickettsia peacockii species 47589 787 species Rickettsia australis 495 0 1 33989 60 Rickettsia amblyommatis species 0 1 1105106 Rickettsia philipii species 73 0 1 35792 species Rickettsia parkeri 8 1 0 1 0 33991 species 19 Rickettsia montanensis 114295 no rank 165 1 0 337479 species Rickettsia endosymbiont of Bemisia tabaci 165 0 1 114292 species group 432 2 0 785 256 species Rickettsia typhi 1 0 Rickettsia prowazekii species 176 782 0 1 2 1 0 2 69474 788 genus Orientia 1 0 784 Orientia tsutsugamushi 786 species 0 7 1 21 Anaplasmataceae 4010 family 942 genus 389 768 0 3 770 Anaplasma marginale species 129 0 1 0 1 769 83 species Anaplasma centrale 106179 177 species group 0 1 0 1 948 Anaplasma phagocytophilum 177 species 0 8 952 1872 tribe 8 0 1 8 Wolbachia genus 1872 953 7 0 2640676 1864 no rank 1 0 77551 344 species Wolbachia endosymbiont of Onchocerca volvulus 100901 Wolbachia endosymbiont of Onchocerca ochengi 340 species 0 1 1 0 80849 70 species Wolbachia endosymbiont of Brugia malayi 77038 species Wolbachia endosymbiont of Drosophila simulans 412 0 1 0 1 66084 species Wolbachia sp. wRi 256 Wolbachia endosymbiont of Cimex lectularius species 227 246273 1 0 species Wolbachia endosymbiont of Drosophila melanogaster 215 163164 1 0 943 Ehrlichia genus 1037 1 11 0 6 species group 739 106178 0 4 0 1 species Ehrlichia muris 214 35795 779 218 species Ehrlichia ruminantium 1 0 1 0 945 155 species Ehrlichia chaffeensis 0 1 944 Ehrlichia canis species 152 287 no rank 106181 0 1 287 species Ehrlichia sp. HF 391036 0 1 33993 705 genus 0 3 33994 Neorickettsia helminthoeca 279 species 0 1 950 species Neorickettsia risticii 130 0 1 Neorickettsia sennetsu 296 species 951 1 0 1699067 no rank 243 0 1 0 1 1528098 species Rickettsiales bacterium Ac37b 243 3873 no rank 82117 7 0 991903 Polymorphum 916 genus 2 0 3 1 0 1 991904 Polymorphum gilvum 913 species genus 1805 Phreatobacter 1632780 2 0 1 30 0 1 1868589 1775 species Phreatobacter sp. S-12 62654 clade 319 1 0 319 genus 767891 0 1 0 1 767892 Candidatus Puniceispirillum marinum species 319 213485 genus Micavibrio 833 2 10 1 0 1 0 349221 species Micavibrio aeruginosavorus 823 1 681 0 65 Rhodospirillales order 61598 204441 Rhodospirillaceae 36096 family 41295 30 0 581 1 168934 Thalassospira genus 1771 1 13 0 3 1 0 220697 Thalassospira xiamenensis species 881 2048283 species 877 Thalassospira sp. CSC3H3 1 0 genus 786 Magnetospira 1182780 10 1 0 2 2685734 776 no rank 0 1 1 0 Magnetospira sp. QH-2 776 species 1288970 3 79 1 0 1081 Rhodospirillum 3058 genus 1085 Rhodospirillum rubrum species 1180 0 1 1 0 species 1799 Rhodospirillum centenum 34018 Tistrella genus 1697 171436 57 1 0 2 1 0 171437 Tistrella mobilis species 1640 13 1 0 2 Pararhodospirillum 963 genus 1612157 0 1 1084 Pararhodospirillum photometricum species 950 1543704 genus Niveispirillum 1835 40 1 0 2 1612173 species Niveispirillum cyanobacteriorum 1795 0 1 197 1 0 5 13134 Magnetospirillum 8239 genus 2617991 3968 no rank 0 2 1 0 1639348 2103 Magnetospirillum sp. ME-1 species 1 0 1663591 species 1865 Magnetospirillum sp. XM-1 Magnetospirillum magneticum species 1956 84159 0 1 1 0 55518 2118 Magnetospirillum gryphiswaldense species genus 399 Haematospirillum 1804663 2 0 16 1 0 1 species 383 Haematospirillum jordaniae 1549855 1 0 genus 285 1263978 0 1 1263979 species 285 Candidatus Endolissoclinum faulkneri 191 Azospirillum 13284 genus 5 0 1 342 193 species Azospirillum lipoferum 4958 1 0 192 3969 species Azospirillum brasilense 0 1 1 0 2492 species Azospirillum thiophilum 528244 species Azospirillum humicireducens 1523 1226968 1 0 2 0 1 31 1543705 3198 genus Nitrospirillum 0 1 28077 species 3167 Nitrospirillum amazonense 34 0 585 1 433 Acetobacteraceae 24821 family 1602345 850 genus 1 0 Parasaccharibacter apium 850 species 1510841 1 0 1 1 0 2 genus 511 Asaia 91914 Asaia bogorensis 510 species 91915 1 0 1 63 0 3 genus Acidiphilium 1819 522 1 0 species 842 Acidiphilium cryptum 524 62140 Acidiphilium multivorum 914 species 1 0 0 1 100 5 1434011 4141 genus Komagataeibacter 28448 1859 species Komagataeibacter xylinus 0 1 33995 Komagataeibacter europaeus species 664 1 0 1 0 species 843 Komagataeibacter nataicola 265960 0 1 1177712 species 675 Komagataeibacter medellinensis genus Kozakia 638 153497 38 1 0 2 Kozakia baliensis species 600 153496 1 0 2 0 1 44 Granulibacter genus 2298 364409 0 1 Granulibacter bethesdensis 2254 species 364410 89583 genus 924 Gluconacetobacter 0 1 44 2 880 species Gluconacetobacter diazotrophicus 33996 0 1 Neoasaia 687 genus 320496 2 0 25 1 0 1 Neoasaia chiangmaiensis 662 species 320497 434 Acetobacter genus 6059 8 0 1 72 65959 Acetobacter pomorum 502 species 1 0 0 1 species Acetobacter persici 735 1076596 1 0 438 species Acetobacter pasteurianus 2354 151157 subgenus 701 0 1 Acetobacter aceti species 701 435 0 1 104102 species Acetobacter tropicalis 542 1 0 0 1 1633874 species Acetobacter oryzifermentans 507 1 0 646 species Acetobacter senegalensis 446692 Gluconobacter 2675 genus 441 3 1 6 0 0 1 species Gluconobacter oxydans 1873 442 1 0 species 796 Gluconobacter albidus 318683 125216 Roseomonas genus 3634 0 145 1 3 2617492 no rank 1792 0 1 1 0 species Roseomonas sp. FDAARGOS_362 1792 2018065 0 1 species 1697 Roseomonas gilardii 257708 order 2099 2800060 0 5 Hyphomonadaceae 2099 family 69657 5 0 42 1 85 1510 genus Hyphomonas 42 1 0 3 714 species Hyphomonas neptunium 81032 0 1 2630699 no rank 754 0 1 1 0 Hyphomonas sp. Mor2 754 species 1906738 2723 genus 547 1 0 species Hirschia baltica 547 2724 0 1 204457 order 63082 Sphingomonadales 505 1 0 82 22 1 255 0 Erythrobacteraceae family 13869 335929 2 0 genus 1687 1855416 266951 species Erythrobacter seohaensis 1070 0 1 Erythrobacter flavus species 617 192812 1 0 4 1 84 0 361177 genus Altererythrobacter 1887 1 0 Altererythrobacter atlanticus species 730 1267766 Altererythrobacter epoxidivorans species 664 361183 0 1 476157 species Altererythrobacter ishigakiensis 409 1 0 2800788 3906 no rank 0 6 2277 Erythrobacter genus 1041 3 64 1 0 Erythrobacter litoralis 1533 species 39960 1 0 1112 species Porphyrobacter neustonensis 680 0 1 1111 1629 Porphyrobacter genus 86 1 0 3 2683265 1543 no rank 2 0 1896196 Porphyrobacter sp. LM 6 species 865 1 0 1 0 2023229 Porphyrobacter HT-58-2 species 678 1278 genus 2800681 0 2 967 Erythrobacter gangjinensis species 502682 0 1 0 1 species 311 Erythrobacter atlanticus 1648404 579 genus 2800685 0 1 Altererythrobacter marensis species 579 543877 1 0 51 1 0 3 genus 1920 Croceicoccus 1295327 0 1 1348774 Croceicoccus naphthovorans species 844 1 0 Croceicoccus marinus species 1025 450378 genus 1038 2800682 1 0 645517 1038 species Altererythrobacter namhicola 0 1 2 0 2800686 genus 1319 1 0 Altererythrobacter dongtanensis species 858 692370 1 0 1982042 species Altererythrobacter mangrovi 461 41297 family 48708 Sphingomonadaceae 59 542 1 0 1 251 0 15 genus Sphingomonas 15107 13687 0 1 1560345 Sphingomonas panacis species 892 0 1 93064 species Sphingomonas koreensis 1026 196159 5612 no rank 0 6 0 1 species Sphingomonas sp. MM-1 1001 745310 1961362 Sphingomonas sp. NIC1 species 984 1 0 species Sphingomonas sp. LK11 1256 1390395 1 0 1 0 1327635 species 862 Sphingomonas sp. Cra20 1938607 859 species Sphingomonas sp. LM7 1 0 1030157 Sphingomonas sp. KC8 650 species 0 1 1 0 1609977 species Sphingomonas hengshuiensis 786 Sphingomonas taxi species 1339 1549858 1 0 Sphingomonas wittichii species 2634 160791 2 1 1431 0 1283312 Sphingomonas sp. DC-6 1203 strain 1 0 0 1 Sphingomonas sanxanigenens species 1465 397260 0 1 Sphingomonas melonis 1102 species 152682 24 1 0 2 72173 Citromicrobium genus 730 2630544 no rank 706 0 1 1 0 1634516 Citromicrobium sp. JL477 706 species 0 1 73 5 165696 genus Novosphingobium 4775 1 0 no rank 1121 2644732 0 1 702113 Novosphingobium sp. PP1Y species 1121 0 1 158500 species Novosphingobium resinovorum 1496 903 Novosphingobium aromaticivorans species 48935 1 0 205844 species Novosphingobium pentaromativorans 1182 1 0 Zymomonas genus 1569 541 0 1 125 2 Zymomonas mobilis 1444 species 542 1 0 0 1 genus 1103 2685927 Sphingomonas sp. JJ-A5 1103 species 1921510 0 1 2709685 542 genus 1 0 1 0 Sphingorhabdus flavimaris species 542 266812 3 0 43 1 Sphingorhabdus 1499 genus 1434046 no rank 1456 2614947 0 2 525 species Sphingorhabdus sp. YGSMI21 2077182 1 0 0 1 species 931 Sphingorhabdus sp. M41 1806885 2 9 1 0 Rhizorhabdus genus 938 1649486 0 1 Rhizorhabdus dicambivorans species 929 1850238 165697 7503 genus Sphingopyxis 10 1 243 0 0 1 Sphingopyxis alaskensis species 599 117207 1 0 species Sphingopyxis macrogoltabida 1621 33050 33052 species 477 Sphingopyxis terrae 1 0 species 643 Sphingopyxis fribergensis 1515612 1 0 1 0 973 Sphingopyxis granuli species 267128 4 0 2614943 2947 no rank 1866325 species 795 Sphingopyxis sp. MG 0 1 Sphingopyxis sp. LPB0140 229 species 1913578 1 0 292913 Sphingopyxis sp. 113P3 species 1291 1 0 1357916 species Sphingopyxis sp. QXT-31 632 1 0 165695 13401 genus Sphingobium 15 292 1 0 Sphingobium baderi 797 species 1332080 1 0 0 1 Sphingobium hydrophobicum 924 species 1673076 1 0 332056 species Sphingobium japonicum 791 13690 species Sphingobium yanoikuyae 1003 1 0 2611147 5868 no rank 0 6 0 1 Sphingobium sp. EP60837 771 species 1855519 0 1 1315974 Sphingobium sp. TKS species 1108 Sphingobium sp. YBL2 species 945 484429 0 1 Sphingobium sp. SYK-6 species 937 627192 0 1 407020 Sphingobium sp. MI1205 918 species 0 1 species Sphingobium sp. RAC03 1189 1843368 0 1 Sphingobium chlorophenolicum species 1229 46429 1 0 species Sphingobium herbicidovorans 899 76947 0 1 734 species Sphingobium indicum 332055 0 1 species Sphingobium cloacae 864 120107 1 0 150203 genus Blastomonas 999 1 18 0 2 2626550 no rank 981 0 1 0 1 1842535 species 981 Blastomonas sp. RAC04 4 1 5 0 622 order Magnetococcales 1191478 0 1 1 3 1191479 Magnetococcaceae 617 family 1 1 0 2 Magnetococcus 616 genus 162171 0 1 1124597 615 species Magnetococcus marinus 2 0 255473 578 order 255474 Parvularculaceae 578 family 2 0 2 1 1 0 576 genus 208215 0 1 Parvularcula bermudensis 576 species 208216 7 0 33 1 54526 order Pelagibacterales 1329 family 1015 Pelagibacteraceae 1655514 0 1 1 5 2 0 genus 446 198251 1 0 2647897 218 no rank 0 1 species Candidatus Pelagibacter sp. IMCC9063 218 1002672 198252 228 Candidatus Pelagibacter ubique species 0 1 0 2 1655516 no rank 568 859653 355 species alpha proteobacterium HIMB5 1 0 0 1 alpha proteobacterium HIMB59 species 213 744985 1 0 genus 281 2045213 1925548 Candidatus Fonsibacter ubiquis 281 species 0 1 1 1870 0 210 356 Rhizobiales order 173273 119043 family Rhodobiaceae 711 3 0 7 1 5 1 0 2 256616 Parvibaculum 704 genus 0 1 256618 species 699 Parvibaculum lavamentivorans 20 1 124 0 69277 16946 family Phyllobacteriaceae 245876 Nitratireductor 1440 genus 15 1 0 2 472175 1425 Nitratireductor basaltis species 1 0 2 0 1 10 449972 genus 1063 Chelativorans 1 0 2643807 1053 no rank 266779 species 1053 Chelativorans sp. BNC1 0 1 genus Phyllobacterium 1038 28100 2 6 1 0 Phyllobacterium zundukense species 1032 1867719 0 1 10294 genus Mesorhizobium 68287 293 1 0 9 0 1 Mesorhizobium opportunistum 1218 species 593909 536018 Mesorhizobium australicum species 1047 0 1 0 1 39645 species Mesorhizobium ciceri 1667 1378 no rank 325217 1 0 0 1 species 1378 Mesorhizobium sp. WSM1497 278153 0 1 381 Mesorhizobium loti species 1204 1 0 2066070 1368 species Mesorhizobium japonicum 71433 species Mesorhizobium amorphae 1331 0 1 1 0 1670800 species Mesorhizobium sp. B7 788 2 9 1 0 genus Hoeflea 926 274591 2614931 917 no rank 0 1 Hoeflea sp. IMCC20628 species 917 1620421 0 1 31988 genus 2061 Aminobacter 1 11 0 2 Aminobacter aminovorans species 2050 83263 1 0 1 412 0 26 41294 31400 Bradyrhizobiaceae family genus Nitrobacter 857 911 0 4 1 3 479 Nitrobacter hamburgensis species 912 1 0 913 Nitrobacter winogradskyi species 374 1 0 13 1 0 2 40136 genus Oligotropha 759 40137 species Oligotropha carboxidovorans 746 1 0 genus 616 Variibacter 1649510 2 0 15 1 1 0 species 601 Variibacter gotjawalensis 1333996 374 Bradyrhizobium genus 16705 11 0 1 465 6 0 2631580 8094 no rank 0 1 1411 Bradyrhizobium sp. ORS 278 species 114615 species Bradyrhizobium sp. ORS 285 1159 115808 1 0 1 0 species Bradyrhizobium sp. CCGE-LA001 1361 1223566 1 0 2057741 species 1300 Bradyrhizobium sp. SK17 0 1 376 1310 Bradyrhizobium sp. species 1 0 species Bradyrhizobium sp. BTAi1 1553 288000 375 2459 species Bradyrhizobium japonicum 1 0 44255 1369 Bradyrhizobium oligotrophicum species 0 1 1274631 Bradyrhizobium icense species 1237 0 1 1 0 3081 species Bradyrhizobium diazoefficiens 1355477 78 1 0 5 Bosea genus 5687 85413 1526658 1807 species Bosea vaviloviae 0 1 2653178 no rank 3802 3 0 2015316 species 1339 Bosea sp. AS-1 1 0 Bosea sp. RAC05 species 1372 1842539 0 1 0 1 Bosea sp. PAMC 26642 species 1091 1792307 genus 6364 Rhodopseudomonas 1073 1 167 0 2 1 0 6197 Rhodopseudomonas palustris species 1076 0 6 119042 2925 no rank 0 11 1 2 1140 Hartmannibacter genus 1572860 0 1 1129 species Hartmannibacter diazotrophicus 1482074 883 Methyloceanibacter genus 1484898 2 0 1 8 1384459 species Methyloceanibacter caenitepidi 875 1 0 Pseudorhodoplanes genus 902 1734920 2 24 1 0 1 0 species Pseudorhodoplanes sinuspersici 878 1235591 255475 family Aurantimonadaceae 5365 7 0 1 40 genus 1186 Aureimonas 414371 5 1 0 2 2615206 no rank 1181 1 0 Aureimonas sp. AU20 1181 species 1349819 0 1 4 103 1 0 293088 genus Martelella 4139 0 1 293089 1342 species Martelella mediterranea 1 0 1436 no rank 2629616 1436 species Martelella sp. AD-3 686597 1 0 1 0 species 1258 Martelella endophytica 1486262 family Methylobacteriaceae 20345 119045 121 1 0 15 0 1 732 9 407 genus Methylobacterium 11860 Methylobacterium nodulans species 1195 114616 1 0 0 1 270351 Methylobacterium aquaticum 1527 species 0 1 1356 species Methylobacterium oryzae 334852 1389 Methylobacterium phyllosphaerae species 418223 0 1 Methylobacterium radiotolerans 1711 species 31998 0 1 no rank 3950 2615210 3 0 1 0 Methylobacterium sp. 4-46 species 1279 426117 1 0 1479019 species 1540 Methylobacterium sp. C1 species 1131 Methylobacterium sp. AMS5 925818 1 0 2282523 genus 6651 0 3 223967 Methylobacterium populi species 1959 1 0 29429 species Methylobacterium zatmanii 1114 1 0 species Methylobacterium extorquens 3578 408 1 0 0 1 7 2 1713 Microvirga genus 186650 species 1706 Microvirga ossetica 1882682 1 0 family 5311 Xanthobacteraceae 335928 1 57 0 7 2 0 1 129 Starkeya 1567 genus 152053 Starkeya novella species 1438 921 0 1 279 1753 Xanthobacter genus 45 1 0 2 1 0 Xanthobacter autotrophicus 1708 species 280 2 0 26 1 6 genus Azorhizobium 1934 0 1 7 species Azorhizobium caulinodans 1908 6 0 18 1 2929 family Methylocystaceae 31993 Methylosinus genus 1171 425 46 1 0 2 426 Methylosinus trichosporium 1125 species 0 1 3 33 1 0 1740 genus Methylocystis 133 1 0 no rank 822 2625913 0 1 187303 822 species Methylocystis sp. SC2 species Methylocystis bryophila 885 655015 1 0 6 1 0 5 45404 1543 family Beijerinckiaceae genus 812 Beijerinckia 532 2 0 1 1 811 species Beijerinckia indica 533 1 0 0 2 1 2 genus Methylocella 725 120652 Methylocella silvestris species 723 199596 1 0 55 1 0 20 118882 6294 family Brucellaceae 1 22 0 5 528 3454 genus Ochrobactrum 1 0 529 760 Ochrobactrum anthropi species 271865 species Ochrobactrum sp. A44 702 1 0 0 1 Ochrobactrum pituitosum species 1122 571256 0 1 species Ochrobactrum pseudogrignonense 848 419475 2785 Brucella genus 234 14 0 1 966 1 0 species 173 Brucella ceti 120577 0 1 235 51 species Brucella abortus species Brucella microti 43 444163 1 0 species Brucella ovis 29 236 1 0 29461 species Brucella suis 69 0 1 species Brucella vulpis 368 981386 0 1 158 species Brucella pinnipedialis 120576 1 0 36855 species Brucella canis 150 1 0 0 1 species 117 Brucella melitensis 29459 2632610 no rank 661 4 0 1885919 Brucella sp. 141012304 species 301 1 0 species Brucella sp. 09RB8471 121 1149952 0 1 Brucella sp. 2002734562 species 43 1891098 0 1 0 1 Brucella sp. 09RB8910 196 species 1844051 0 662 1 54 57225 family Rhizobiaceae 82115 no rank 42605 227290 0 35 2 0 1 11 1525371 genus Neorhizobium 1928 0 1 399 species Neorhizobium galegae 1917 Rhizobium genus 30331 379 26 0 1893 1 2613769 no rank 13371 0 20 1 0 1703961 Rhizobium sp. N1314 species 227 1 0 species 801 Rhizobium sp. NT-26 1125847 1 0 2020313 species 237 Rhizobium sp. TAL182 1703965 Rhizobium sp. N6212 2 species 1 0 1703967 species Rhizobium sp. N741 6 0 1 0 1 species 1788 Rhizobium sp. 10195 2028343 Rhizobium sp. Kim5 species 705 2020311 1 0 0 1 species 954 Rhizobium sp. IRBG74 424182 1 0 1703966 species Rhizobium sp. N731 227 2020312 species Rhizobium sp. CIAT894 766 1 0 1 0 1914541 Rhizobium sp. Y9 species 1069 1 0 1703964 Rhizobium sp. N621 2 species 1 0 1301032 964 species Rhizobium sp. IE4771 1703960 Rhizobium sp. N113 7 species 0 1 2048897 species Rhizobium sp. NXC24 1339 1 0 0 1 Rhizobium sp. NXC14 species 752 1981173 species Rhizobium sp. N1341 9 1703962 0 1 1 0 Rhizobium sp. ACO-34A species 1741 1571470 843 Rhizobium sp. N324 species 1703969 1 0 0 1 1869170 Rhizobium sp. S41 species 932 398 1100 Rhizobium tropici species 1 0 384 Rhizobium leguminosarum species 6520 1 0 1 0 396 species Rhizobium phaseoli 1925 species Rhizobium gallicum 2047 56730 0 1 species 3475 Rhizobium etli 29449 0 1 357 genus Agrobacterium 10346 7 1 246 0 359 Agrobacterium rhizogenes species 1041 0 1 1 0 1306 species Agrobacterium vitis 373 1183400 5330 species group 0 2 1176649 species Agrobacterium fabrum 1018 1 0 4312 Agrobacterium tumefaciens species 358 1 0 2632611 no rank 2423 0 2 1046 Agrobacterium sp. RAC06 species 1842536 1 0 861208 1377 species Agrobacterium sp. H13-3 0 1 3 1 0 6 genus Liberibacter 1016 34019 1 0 34020 species 173 Candidatus Liberibacter africanus 34021 species 140 Candidatus Liberibacter asiaticus 1 0 0 1 156 species Candidatus Liberibacter americanus 309868 0 1 species 254 Liberibacter crescens 1273132 1 0 290 species Candidatus Liberibacter solanacearum 556287 323620 Shinella genus 1597 12 1 0 2 2643062 no rank 1585 0 1 0 1 species Shinella sp. HZN7 1585 879274 227292 11345 no rank 0 10 3 1 16 0 106591 Ensifer genus 2734 Ensifer adhaerens species 1599 106592 1 0 1 0 716925 1119 Ensifer sojae species 8611 Sinorhizobium genus 28105 0 1 217 7 0 1 species 1862 Sinorhizobium meliloti 382 species group 2220 663276 1 0 0 1 Sinorhizobium fredii species 2220 380 0 2 2613772 no rank 2107 794846 Sinorhizobium sp. CCBAU 05631 838 species 1 0 Sinorhizobium sp. RAC02 species 1269 1842534 0 1 110321 Sinorhizobium medicae species 730 0 1 1475 Sinorhizobium americanum species 194963 1 0 Chelatococcaceae family 2478 2036754 4 0 1 39 73 1 0 3 28209 2439 Chelatococcus genus 0 1 2638111 no rank 1368 Chelatococcus sp. CO-6 species 1368 1702325 0 1 1 0 444444 species 998 Chelatococcus daeguensis 1 37 0 18 772 family Bartonellaceae 6827 Bartonella genus 6790 773 17 0 53 1 Bartonella apis species 1135 1686310 1 0 1 0 774 Bartonella bacilliformis species 480 803 115 species Bartonella quintana 1 0 Bartonella grahamii species 219 33045 0 1 85701 species 936 Bartonella tribocorum 1 0 33047 Bartonella vinsonii species 186 1 0 0 1 species Bartonella clarridgeiae 363 56426 2317 no rank 2645622 6 0 284 Bartonella sp. JB63 species 1933907 0 1 1 0 1933904 621 species Bartonella sp. WD16.2 Bartonella sp. Raccoon60 species 343 1933912 0 1 1 0 346 species Bartonella sp. A1379B 1933910 1 0 Bartonella sp. 1-1C species 441 515256 species 282 Bartonella sp. JB15 1933906 1 0 0 1 species Bartonella australis 154 388640 0 1 1318743 species Bartonella ancashensis 287 0 1 38323 545 Bartonella henselae species 1 90 0 18 45401 family 11104 Hyphomicrobiaceae 2 55 1 0 59282 genus 1349 Blastochloris 1079 Blastochloris viridis species 1294 1 0 4 103 1 0 genus Devosia 4025 46913 no rank 3922 196773 3 0 species 1632 Devosia sp. H5989 1643450 0 1 1736675 Devosia sp. A16 species 1442 0 1 2083786 species Devosia sp. I507 848 1 0 0 1 42 2 699 Rhodomicrobium genus 1068 1069 species Rhodomicrobium vannielii 657 1 0 1 0 119044 478 genus 0 1 Candidatus Filomicrobium marinum species 478 1608628 0 1 40 2 1082930 Pelagibacterium 722 genus species Pelagibacterium halotolerans 682 531813 1 0 Rhodoplanes genus 1277 29407 0 90 1 2 0 1 no rank 1187 2619116 1 0 674703 Rhodoplanes sp. Z2-YC6860 species 1187 81 2464 genus Hyphomicrobium 0 1 29 4 0 1 species Hyphomicrobium nitrativorans 718 1427356 2619925 873 no rank 0 1 0 1 717785 species Hyphomicrobium sp. MC1 873 species 844 Hyphomicrobium denitrificans 53399 0 1 204455 order 71311 Rhodobacterales 92 0 585 1 70726 Rhodobacteraceae family 31989 0 1327 1 91 1 1 0 2 1579315 genus 491 Halocynthiibacter 1579316 490 species Halocynthiibacter arcticus 1 0 9 0 171 1 genus Paracoccus 10546 265 0 1 Paracoccus denitrificans species 1901 266 0 1 246570 893 no rank 1 0 1529068 Paracoccus sp. BM15 893 species 1 0 Paracoccus yeei species 1720 147645 Paracoccus zhejiangensis species 1333 1077935 0 1 1 0 species Paracoccus contaminans 1031 1945662 1 0 Paracoccus aminophilus species 993 34003 1 0 2065379 species Paracoccus sp. CBA4604 1080 1424 Paracoccus aminovorans species 34004 1 0 309512 genus 988 Dinoroseobacter 0 1 1 2 0 1 215813 Dinoroseobacter shibae 987 species 0 3 1 3 97050 2282 Ruegeria genus 1 0 no rank 649 2625375 292414 species Ruegeria sp. TM1040 649 0 1 89184 species Ruegeria pomeroyi 1630 0 1 0 1 1 2 Defluviimonas genus 1461 1097466 1335048 Defluviimonas alba species 1460 1 0 210 1 0 4 4171 genus Rhodovulum 34008 1 0 Rhodovulum sulfidophilum 1620 species 35806 0 2 2631432 2341 no rank 1 0 species Rhodovulum sp. P5 913 1564506 0 1 Rhodovulum sp. MB263 1428 species 308754 227873 genus 1838 Pannonibacter 21 1 0 2 species Pannonibacter phragmitetus 1817 121719 0 1 0 1 1 2 1284657 Planktomarina genus 251 1284658 species Planktomarina temperata 250 1 0 1392 genus Octadecabacter 53945 0 1 1 4 53946 433 species Octadecabacter arcticus 0 1 1458307 Octadecabacter temperatus 399 species 0 1 1 0 1217908 559 Octadecabacter antarcticus species 119541 668 genus Rhodobaca 0 1 1 2 1 0 441209 species 667 Rhodobaca barguzinensis 1 0 2211641 genus 1259 0 1 245188 1259 Loktanella vestfoldensis species 1 0 1649279 genus 931 379347 Ruegeria mobilis 931 species 0 1 2 7 1 0 1759396 genus Marivivens 526 2622455 519 no rank 1 0 1 0 1920883 species Marivivens sp. JLT3646 519 no rank 1616 58840 2 0 1904441 species Rhodobacteraceae bacterium 734 0 1 species Rhodobacteraceae bacterium QY30 882 2033435 0 1 5 1 0 2 genus 1659 Sagittula 58842 2624628 1654 no rank 1 0 1 0 species 1654 Sagittula sp. P11 2009329 5 0 16 1 genus 3290 Celeribacter 875170 Celeribacter indicus 1150 species 1208324 0 1 1 0 1075 Celeribacter manganoxidans species 1411902 1758178 772 Celeribacter ethanolicus species 1 0 0 1 1397108 Celeribacter marinus species 277 Sulfitobacter 2139 genus 60136 0 1 11 3 196795 no rank 1246 1 0 1 0 1917485 species Sulfitobacter sp. AM1-D1 1246 1402135 882 species Sulfitobacter pseudonitzschiae 1 0 957 genus Confluentimicrobium 1609958 0 2 1 2 955 no rank 2643318 0 1 0 1 1609966 species 955 Confluentimicrobium sp. EMB200-NS6 genus 999 74030 1 0 0 1 215743 species Roseovarius mucosus 999 360528 Pelagibaca genus 1475 7 1 0 2 0 1 1250539 species Pelagibaca abyssi 1468 1 1 0 2 Roseibacterium genus 709 159345 1 0 708 species Roseibacterium elongatum 159346 245186 4 Loktanella genus 0 1 Thioclava 1055 genus 285107 0 1 1 2 1915078 Thioclava nitratireducens species 1054 1 0 3 1 1 0 2433 Roseobacter 1360 genus 1 0 2434 Roseobacter denitrificans 672 species 42443 Roseobacter litoralis species 687 1 0 1 0 genus 726 188905 0 1 no rank 726 2645469 726 Jannaschia sp. CCS1 species 290400 1 0 genus 3105 263377 0 2 no rank 1558 2640570 1 0 1 0 Yangia sp. CCB-MM3 1558 species 1792508 0 1 1229727 1547 species Thiobacimonas profunda 0 5 1 2 191028 Leisingera genus 1073 0 1 133924 1068 species Leisingera methylohalidivorans 6 genus Thalassococcus 436357 0 1 1 47 0 5 Phaeobacter genus 7369 302485 1580596 species 1862 Phaeobacter piscinae 1 0 species Phaeobacter gallaeciensis 2070 60890 1 0 221822 Phaeobacter inhibens species 2823 1 0 Phaeobacter porticola 567 species 1844006 0 1 299261 genus Tateyamaria 745 0 1 1 2 744 species Tateyamaria omphalii 299262 1 0 92944 1611 Ketogulonicigenium genus 0 3 1 3 1 0 92945 species Ketogulonicigenium vulgare 797 811 Ketogulonicigenium robustum species 92947 1 0 0 1 1 2 74032 genus 1011 Antarctobacter Antarctobacter heliothermus species 1010 74033 1 0 0 1 103 5 1060 Rhodobacter genus 6261 0 2 1646 no rank 196779 1 0 965 Rhodobacter sp. CZR27 species 2033869 species 681 Rhodobacter sp. LPB0142 1850250 1 0 0 1 1063 species Rhodobacter sphaeroides 3318 0 1 1061 1194 Rhodobacter capsulatus species 4 57 1 0 478070 4031 genus Labrenzia 0 2 2648686 2604 no rank 0 1 1674922 species Labrenzia sp. CP4 1422 species Labrenzia sp. VG12 1182 2021862 1 0 species Labrenzia aggregata 1370 187304 0 1 0 19 1 2 367771 genus Marinovum 1394 Marinovum algicola 1375 species 42444 0 1 1921002 Holosporales order 1226 6 75 1 0 1 0 44746 family 438 0 1 204454 438 no rank 86106 438 endosymbiont of Acanthamoeba sp. UWC8 species 1 0 2 1 1 0 1777752 family 213 Candidatus Paracaedibacteraceae 1521255 212 genus 1 0 1 0 species Candidatus Paracaedibacter acanthamoebae 212 91604 2 1 10 0 2100208 family 500 Caedimonadaceae 490 genus 1509243 1 0 1 0 1509244 490 species Candidatus Nucleicultrix amoebiphila 0 2 1043 order 2800059 2800061 1043 family 2 0 genus 1043 Maricaulis 74317 0 27 1 2 1 0 74318 species 1016 Maricaulis maris 0 2 1 6 Zetaproteobacteria class 1587 580370 0 24 1 5 order 1585 Mariprofundales 580371 family Mariprofundaceae 1561 580372 0 1 4 4 3 0 1 1 377315 1557 Mariprofundus genus species Mariprofundus aestuarium 732 1921086 0 1 1 0 1921087 Mariprofundus ferrinatatus species 824 0 1 7 10 class 4451 Oligoflexia 1553900 0 12 1 4 Bacteriovoracales 1272 order 2024979 642 family 263369 2 0 642 genus Bacteriovorax 146784 2 1 10 0 1 0 632 Bacteriovorax stolpii species 960 1 0 1652132 family 618 1652133 618 genus 0 1 1 0 species 618 Halobacteriovorax marinus 97084 3172 Bdellovibrionales order 213481 21 1 0 5 4 0 1 5 213483 family 3151 Bdellovibrionaceae 3 0 1 2 Bdellovibrio genus 3146 958 1 0 Bdellovibrio bacteriovorus 2852 species 959 1 0 Bdellovibrio exovorus species 292 453816 1807140 class 2761 Acidithiobacillia 1 1 0 7 6 1 26 0 225057 2760 order Acidithiobacillales Acidithiobacillaceae family 2734 225058 5 0 1 10 genus Acidithiobacillus 2724 119977 48 1 0 4 1 0 Acidithiobacillus caldus species 841 33059 0 1 920 Acidithiobacillus ferrooxidans species 923 1 0 912 Acidithiobacillus ferrivorans species 160808