members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 31 4868 23603 20410825 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 303 superkingdom 100211 0 2157 phylum 241 1 0 Euryarchaeota 82434 3 28890 0 Thermococci 6839 183968 7 class 41 1 order 1 40 0 Thermococcales 6832 2258 6 0 Thermococcaceae 6826 6 2259 family 1 39 0 4895 Thermococcus 42 2263 genus 1 29 Thermococcus kodakarensis 98 0 311400 1 species 71998 0 Thermococcus pacificus 65 species 1 1 species 62 Thermococcus onnurineus 0 342948 55802 0 559 Thermococcus barophilus species 1 2265 305 Thermococcus litoralis 0 1 species 0 461 Thermococcus paralvinellae 582419 species 1 54262 197 Thermococcus chitonophagus 0 1 species 1 species Thermococcus nautili 85 0 195522 0 Thermococcus gorgonarius 62 71997 species 1 1 species 187878 Thermococcus gammatolerans 76 0 1 species Thermococcus siculi 900 0 72803 species 1 0 79 Thermococcus barossii 54077 81 Thermococcus radiotolerans 0 187880 1 species species 1 2264 0 87 Thermococcus celer 1 species 110164 Thermococcus guaymasensis 94 0 species 1 277988 0 80 Thermococcus thioreducens 1 species 49899 Thermococcus profundus 91 0 172049 399 Thermococcus sibiricus 0 1 species 1 species 53952 55 Thermococcus peptonophilus 0 species 1 163003 0 81 Thermococcus cleftensis 6 no rank 2627626 733 0 114 Thermococcus sp. EXT12c 0 2016361 1 species 0 Thermococcus sp. 4557 108 1042877 species 1 0 101 Thermococcus sp. AM4 246969 species 1 1 species 2008440 Thermococcus sp. 5-4 89 0 1 species 266 Thermococcus sp. 2319x1 0 1674923 1 species Thermococcus sp. P6 55 0 122420 species 1 1712654 0 Thermococcus piezophilus 103 1 species 1505907 100 Thermococcus eurythermalis 0 genus 1 83867 0 309 309 Palaeococcus pacificus 0 971279 1 species 2260 22 1616 Pyrococcus 0 8 1 genus species 1 0 Pyrococcus furiosus 347 2261 53953 0 230 Pyrococcus horikoshii species 1 198 Pyrococcus kukulkanii 0 1609559 1 species 2629106 0 574 no rank 2 Pyrococcus sp. ST04 347 0 1183377 1 species 342949 0 227 Pyrococcus sp. NA2 species 1 29292 164 Pyrococcus abyssi 0 1 species species 1 0 Pyrococcus yayanosii 81 1008460 45 clade 30736 0 2283794 183939 7 0 Methanococci 15907 class 19 1 1 18 order 17 2182 15900 Methanococcales 0 1 9 family 7131 Methanocaldococcaceae 0 196117 18 0 952 196119 genus 1 1 species 2189 952 Methanotorris igneus 0 196118 32 Methanocaldococcus 6161 0 7 1 genus 2190 0 1013 Methanocaldococcus jannaschii species 1 no rank 1 2641196 0 1025 Methanocaldococcus sp. FS406-22 1025 0 644281 1 species 1 species Methanocaldococcus infernus 771 0 67760 1 species 1201 Methanocaldococcus bathoardescens 0 1301915 73913 0 Methanocaldococcus vulcanius 965 species 1 83171 0 1154 Methanocaldococcus fervens species 1 0 8752 Methanococcaceae 13 2183 family 1 8 2 155862 0 980 Methanothermococcus genus 2 1 0 Methanothermococcus okinawensis 978 155863 species 1 10 2184 0 Methanococcus 7759 genus 5 1 species 1 39152 0 4417 Methanococcus maripaludis 1 species 1087 Methanococcus vannielii 0 2187 42879 0 1131 Methanococcus aeolicus species 1 1 species 2188 1114 Methanococcus voltae 0 class 26 1 10 183925 0 14829 Methanobacteria order 25 1 0 14819 Methanobacteriales 7 2158 1 family 2178 1131 0 1 genus 2179 1131 0 2180 0 Methanothermus fervidus 1131 species 1 family 23 1 0 Methanobacteriaceae 13681 8 2159 0 Methanothermobacter 614 7 145260 genus 1 5 1 no rank 172 0 2631116 species 1 866790 0 Methanothermobacter sp. CaT2 172 species 1 145261 0 Methanothermobacter wolfeii 169 species 1 145262 0 Methanothermobacter thermautotrophicus 121 species 1 0 145 Methanothermobacter marburgensis 145263 23 2160 3956 Methanobacterium 0 1 8 genus 1 species 2162 Methanobacterium formicicum 526 0 2627676 808 0 2 no rank 388 Methanobacterium sp. MZ-A1 0 1911685 1 species species 1 1379702 0 Methanobacterium sp. MB1 420 1 species Methanobacterium paludis 794 0 868131 species 1 0 593 Methanobacterium congolense 118062 1 species 59277 359 Methanobacterium subterraneum 0 877455 853 Methanobacterium lacus 0 1 species genus 7 1 2172 10 0 7451 Methanobrevibacter 83816 0 Methanobrevibacter ruminantium 780 species 1 species 1 2173 0 Methanobrevibacter smithii 1631 species 1 294671 0 Methanobrevibacter olleyae 1653 1 species Methanobrevibacter millerae 1372 0 230361 0 2005 2638681 no rank 2 0 Methanobrevibacter sp. YE315 886 1609968 species 1 1 species 1119 Methanobrevibacter sp. AbM4 0 224719 genus 2 1 0 Methanosphaera 1652 2316 2 species 1 2317 0 Methanosphaera stadtmanae 1650 2283796 5379 0 22 clade 183967 0 4696 class 19 0 Methanomassiliicoccales 1355 3 1235850 order 6 1 1577788 14 Methanomassiliicoccaceae 1049 0 1 4 family genus 2 1 2 1080709 0 Methanomassiliicoccus 683 1406512 Candidatus Methanomassiliicoccus intestinalis 681 0 1 species 352 0 1607807 1 genus 1 species 352 Candidatus Methanoplasma termitum 0 1577791 2517203 0 303 family 1 1291539 303 0 1 genus Candidatus Methanomethylophilus alvus 303 0 1291540 1 species 0 3024 Thermoplasmatales 7 2301 order 12 1 2 family 675 0 1747776 1 2 genus Cuniculiplasma 675 0 8 1747777 1 species 1673428 Cuniculiplasma divulgatum 667 0 family 3 90142 0 996 17 74968 0 Ferroplasma 996 genus 1 3 74969 0 482 Ferroplasma acidiphilum species 1 species 1 0 497 Ferroplasma acidarmanus 97393 46630 0 470 family 2 genus 2 1 6 46631 0 470 Picrophilus 464 Picrophilus torridus 0 82076 1 species 1919231 0 324 no rank 1 1 species 324 Thermoplasmatales archaeon BRNA1 0 1054217 0 552 46659 family 3 6 2302 0 552 Thermoplasma genus 3 1 1 species 2303 200 Thermoplasma acidophilum 0 50339 Thermoplasma volcanium 346 0 1 species no rank 1 1234666 0 317 1495144 317 methanogenic archaeon ISO4-H5 0 1 species 1803510 683 0 3 clade 379546 6 683 Aciduliprofundum 0 3 1 genus 379547 0 423 Aciduliprofundum boonei species 1 2633939 254 0 1 no rank species 1 673860 0 254 Aciduliprofundum sp. MAR08-339 class 11 183980 0 1535 0 1535 Archaeoglobales 1 2231 order 1 11 family 1 10 0 1534 Archaeoglobaceae 18 2232 genus 1 54260 0 194 1 species 54261 Ferroglobus placidus 194 0 1 190818 Geoglobus 296 0 1 3 genus species 1 0 141 Geoglobus ahangari 113653 Geoglobus acetivorans 154 0 565033 1 species 2233 14 1026 Archaeoglobus 0 1 5 genus 84156 Archaeoglobus profundus 352 0 1 species 1 species Archaeoglobus sulfaticallidus 272 0 1316941 58290 Archaeoglobus veneficus 215 0 1 species 2234 173 Archaeoglobus fulgidus 0 1 species 0 37942 2290931 clade 121 class 67 1 0 Halobacteria 20888 70 183963 58 1644055 7529 Haloferacales 0 1 19 order no rank 1 0 340 2678336 halophilic archaeon DL31 340 0 756883 1 species Halorubraceae 2061 0 14 1963271 1 8 family 2 1 genus 4 1209988 Halopenitus 407 0 1 species 1048396 403 Halopenitus persicus 0 5 1644057 Salinigranum 640 0 2 1 genus 755307 0 635 Salinigranum rubrum species 1 3 56688 Halorubrum 1000 0 3 1 genus 1 species 2247 439 Halorubrum lacusprofundi 0 29284 0 558 Halorubrum trapanicum species 1 9 1 family 27 1644056 Haloferacaceae 5070 0 genus 4 1 17 2251 0 Haloferax 1815 2246 739 Haloferax volcanii 0 1 species 1 species 747 Haloferax gibbonsii 0 35746 species 1 0 Haloferax mediterranei 312 2252 1 2 genus 265 Halogeometricum 0 5 60846 1 species 60847 Halogeometricum borinquense 260 0 2 1 genus 2963 Haloquadratum 0 293431 2 species 1 293091 0 2961 Haloquadratum walsbyi order 19 1 0 8025 Natrialbales 1644060 94 0 Natrialbaceae 7931 1644061 49 family 1 18 genus 2 1 2 2256 0 428 Natronobacterium 1 species 44930 426 Natronobacterium gregoryi 0 genus 3 1 0 827 Natrinema 88723 7 1 species 69525 471 Natrinema pellirubrum 0 2622230 0 349 no rank 1 0 Natrinema sp. J7-2 349 406552 species 1 631 0 387342 1 genus 631 Halopiger xanaduensis 0 387343 1 species 2 1 genus Natronococcus 495 0 1 29287 1 species 29288 Natronococcus occultus 494 0 1269201 0 509 genus 1 2621923 509 0 1 no rank 1 species 1333523 Salinarchaeum sp. Harcht-Bsk1 509 0 121871 0 1196 genus 2 1 species 588898 582 Haloterrigena daqingensis 0 62320 0 614 Haloterrigena turkmenica species 1 4 203193 Halobiforma 806 0 2 1 genus 0 802 Halobiforma lacisalsi 229731 species 1 2 1 genus 351 Halostagnicola 0 353799 8 0 343 Halostagnicola larsenii 353800 species 1 0 2639 Natrialba 3 63742 genus 2 1 0 Natrialba magadii 2636 13769 species 1 1 28 order 30 2235 5264 Halobacteriales 0 family 1 16 14 1963268 0 3176 Haloarculaceae genus 3 1 0 Halorhabdus 547 8 146825 430914 252 Halorhabdus tiamatea 0 1 species 146826 287 Halorhabdus utahensis 0 1 species 1 2 genus 2 1073987 407 Halorientalis 0 0 405 2648975 no rank 1 1 species 405 Halorientalis sp. IM1011 0 1932360 16 2237 0 Haloarcula 1205 genus 5 1 1 no rank 2624677 289 0 1592728 0 Haloarcula sp. CBA1115 289 species 1 2238 0 Haloarcula marismortui 274 species 1 51589 0 289 Haloarcula hispanica species 1 1 species 1932004 Haloarcula taiwanensis 337 0 genus 1 3 63743 7 0 Natronomonas 584 416273 0 Natronomonas moolapensis 340 species 1 Natronomonas pharaonis 237 0 2257 1 species 1 203135 Halomicrobium 419 0 1 2 genus species 1 0 418 Halomicrobium mukohataei 57705 1 11 family 2058 Halobacteriaceae 0 12 2236 1 2 genus 1656823 4 Halanaeroarchaeum 170 0 1 species 1604004 Halanaeroarchaeum sulfurireducens 166 0 0 170 Halodesulfurarchaeum 4 1980514 genus 2 1 1873524 166 Halodesulfurarchaeum formicicum 0 1 species Halalkalicoccus 330 0 5 332246 1 2 genus 1 species 413810 Halalkalicoccus jeotgali 325 0 24 2239 0 Halobacterium 1376 genus 4 1 591 Halobacterium hubeiense 0 1407499 1 species 2242 0 318 Halobacterium salinarum species 1 1 no rank 2668073 443 0 Halobacterium sp. DL1 443 0 751944 1 species 224756 30 Methanomicrobia 17054 0 1 54 class 570264 3 0 Methanocellales 520 order 5 1 family 4 1 0 517 Methanocellaceae 2 570265 0 515 Methanocella 11 570266 genus 1 3 1175444 Methanocella conradii 219 0 1 species 0 Methanocella arvoryzae 285 1175445 species 1 1 30 order 20 94695 Methanosarcinales 14111 0 0 13459 Methanosarcinaceae 17 2206 family 1 25 genus 1 0 728 196136 1 species 728 Methanosalsum zhilinae 0 39669 Methanomethylovorans 369 0 2 101191 2 1 genus 101192 367 Methanomethylovorans hollandica 0 1 species 9213 Methanosarcina 0 29 2207 1 13 genus 1 species Methanosarcina vacuolata 797 0 2215 418008 0 Methanosarcina horonobensis 574 species 1 1 species 712 Methanosarcina siciliae 0 38027 2209 Methanosarcina mazei 1117 0 1 species 2208 2234 Methanosarcina barkeri 0 1 species 0 2194 2644672 no rank 4 786 Methanosarcina sp. Kolksee 0 1434099 1 species species 1 0 Methanosarcina sp. WH1 393 1434102 562 Methanosarcina sp. MTP4 0 1434100 1 species 1 species 453 Methanosarcina sp. WWM596 0 1434103 2210 Methanosarcina thermophila 546 0 1 species 496 Methanosarcina lacustris 0 170861 1 species 1 species 514 Methanosarcina acetivorans 0 2214 2 genus 966 0 2225 species 1 2226 0 Methanococcoides methylutens 495 species 1 29291 0 Methanococcoides burtonii 471 0 972 Methanohalophilus 2175 2 genus 3 1 species 1 2177 0 528 Methanohalophilus halophilus species 1 0 442 Methanohalophilus mahii 2176 genus 1 2321 0 925 2322 0 925 Methanohalobium evestigatum species 1 2 1 genus Methanolobus 269 0 2220 1 species 1 420950 0 Methanolobus psychrophilus 268 Methanosaetaceae 632 0 143067 1 4 1 family 7 2222 0 Methanothrix 631 genus 3 1 303 Methanothrix soehngenii 0 2223 1 species species 1 301375 0 Methanosaeta harundinacea 321 2393 Methanomicrobiales 0 9 2191 18 1 order 0 211 88404 family 2 2 1 genus Methanocorpusculum 211 0 6 2192 0 205 Methanocorpusculum labreanum 83984 species 1 6 1 family Methanoregulaceae 705 0 1198451 14 genus 1 2 0 Methanosphaerula 231 475087 3 0 Methanosphaerula palustris 228 475088 species 1 1 3 genus Methanoregula 460 0 395331 3 1 species 252 Methanoregula formicica 0 882104 358766 Methanoregula boonei 205 0 1 species 383 0 196137 2 family 2202 14 Methanospirillum 383 0 1 2 genus 369 Methanospirillum hungatei 0 2203 1 species 1 7 family Methanomicrobiaceae 1085 0 2194 14 0 Methanolacinia 291 230355 5 genus 1 2 Methanolacinia petrolearia 286 0 54120 1 species genus 1 4 45989 9 0 Methanoculleus 780 species 1 0 Methanoculleus marisnigri 265 2198 no rank 1 0 228 2619537 1 species 86622 Methanoculleus sp. MAB1 228 0 83986 278 Methanoculleus bourgensis 0 1 species 1783275 0 17620 clade 61 0 9195 28889 phylum 42 0 Thermoprotei 9195 5 183924 class 42 1 4 order 871006 947 0 family 1 3 0 899 Caldisphaeraceae 3 255472 5 200414 0 896 Caldisphaera genus 1 2 1 species Caldisphaera lagunensis 891 0 200415 family 1 0 48 871007 1 genus 105850 48 0 242703 48 Acidilobus saccharovorans 0 1 species order 13 1 114380 1 0 1561 Desulfurococcales family 9 1 2272 2 0 1291 Desulfurococcaceae genus 1 477695 0 61 1200300 0 Thermogladius calderae 61 species 1 1 genus 79 0 54253 species 1 0 79 Thermosphaera aggregans 54254 2273 0 171 genus 2 0 116 Desulfurococcus amylolyticus 94694 species 1 species 1 2275 0 55 Desulfurococcus mucosus 2 genus 2279 754 0 species 1 0 476 Staphylothermus marinus 2280 Staphylothermus hellenicus 278 0 84599 1 species 54258 0 224 genus 2 54259 Ignicoccus islandicus 163 0 1 species 0 61 Ignicoccus hospitalis 160233 species 1 2307 269 0 3 family 2308 0 80 genus 1 0 Pyrodictium delaneyi 80 1273541 species 1 82 0 54247 1 genus 82 Hyperthermus butylicus 0 54248 1 species 54251 107 0 1 genus 0 Pyrolobus fumarii 107 54252 species 1 order 1 11 0 5273 Sulfolobales 3 2281 10 family 118883 5270 0 1057 0 69655 1 genus 111955 Sulfolobus tokodaii 1057 0 1 species genus 2 1 0 Acidianus 706 12914 1 1 species 705 Acidianus hospitalis 0 563177 10 2284 Sulfolobus 2320 0 1 4 genus 1 species 2285 Sulfolobus acidocaldarius 469 0 698 0 2641160 1 no rank species 1 0 698 Sulfolobus sp. A20 1891280 0 Sulfolobus islandicus 1143 43080 species 1 genus 1 0 757 2100760 1 species 2287 757 Sulfolobus solfataricus 0 genus 2 41980 0 430 1006005 0 Metallosphaera cuprina 272 species 1 0 Metallosphaera sedula 158 43687 species 1 order 1 13 1 2266 0 1409 Thermoproteales 7 1 family 2267 1 Thermoproteaceae 1009 0 2 genus 2270 222 0 1 species 184117 99 Thermoproteus uzoniensis 0 0 123 Thermoproteus tenax 2271 species 1 1 genus 205 0 76886 205 Caldivirga maquilingensis 0 76887 1 species 1 genus 143 0 2276 0 143 Pyrobaculum islandicum 2277 species 1 2 genus 164450 438 0 1 species 985052 296 Vulcanisaeta moutnovskia 0 0 142 Vulcanisaeta distributa 164451 species 1 0 399 114378 family 5 genus 5 1 2 2268 0 Thermofilum 399 1365176 0 Thermofilum adornatus 99 species 1 species 1 1483572 0 Thermofilum carboxyditrophus 89 species 1 0 110 Thermofilum uzonense 1550241 99 Thermofilum pendens 0 2269 1 species 0 8321 651137 phylum 17 class 1 5 0 1746 Nitrososphaeria 1 1643678 order 2 1 0 840 Nitrososphaerales 1033996 2 1 family 1033997 838 0 genus 1 0 838 497726 species 1 0 Nitrososphaera viennensis 838 1034015 2 1968909 Candidatus Nitrosocaldales 905 0 1 2 order 1 family 903 0 1968910 1 genus 498374 903 0 species 1 2045011 0 Candidatus Nitrosocaldus islandicus 903 0 2152 651142 no rank 5 Candidatus Nitrosopelagicus 1416 0 1593364 35 1 2 genus 1 species 1381 Candidatus Nitrosopelagicus brevis 0 1410606 1 3 genus 736 Candidatus Nitrosotenuis 0 1825023 3 Candidatus Nitrosotenuis cloacae 351 0 1603555 1 species 1 species Candidatus Nitrosotenuis sp. AQ6f 382 0 1846278 order 7 1 31932 4 0 4423 Nitrosopumilales 5 338190 Nitrosopumilaceae 4419 0 6 1 family genus 1 2 1993653 11 0 1890 Candidatus Nitrosomarinus species 1 1898749 0 1879 Candidatus Nitrosomarinus catalina 33 338191 2524 Nitrosopumilus 0 3 1 genus species 1 0 Candidatus Nitrosopumilus adriaticus 1309 1580092 species 1 0 1182 Candidatus Nitrosopumilus sediminis 1229909 0 104 51967 phylum 2 genus 2 1 1 498845 0 Candidatus Korarchaeum 104 Candidatus Korarchaeum cryptofilum 103 0 498846 1 species 157 0 1783276 1 clade 157 0 1801631 1 phylum 1 genus 2490204 157 0 157 Candidatus Micrarchaeota archaeon Mia14 0 1920749 1 species 4533 1 superkingdom 20287011 Bacteria 0 80 2 1716 clade 16015215 0 1783272 623 0 67819 4 phylum 623 Fimbriimonadia 0 1663419 14 4 1 class 609 Fimbriimonadales 0 1663425 3 1 3 order 1663426 0 606 family 2 0 606 Fimbriimonas 11 1005038 genus 1 2 1005039 0 Fimbriimonas ginsengisoli 595 species 1 clade 160 0 14543994 1798711 0 14543994 Cyanobacteria 69 1117 phylum 160 1 2054 0 1983111 1 no rank 718217 0 2054 cyanobacterium endosymbiont of Epithemia turgida species 1 2103 Chroococcidiopsidales 0 6 1890505 1 4 order 37 1890528 Chroococcidiopsidaceae 2097 0 1 3 family 14 54298 Chroococcidiopsis 2060 0 2 1 genus 0 Chroococcidiopsis thermalis 2046 54299 species 1 34 1 order Nostocales 58231 0 1161 174 3 1 family 1892263 47 2861 Hapalosiphonaceae 0 2814 Fischerella 0 1190 15 2 1 genus 1 no rank 2799 0 494603 1 species Fischerella sp. NIES-3754 2799 0 1752063 0 17211 2661849 family 8 0 Calothrix 17211 145 1186 genus 1 8 0 14688 2619626 no rank 6 1707 Calothrix sp. NIES-3974 0 2005462 1 species 0 1965 Calothrix sp. 336/3 1337936 species 1 species 1 0 Calothrix sp. NIES-4071 3585 2005469 species 1 0 Calothrix sp. PCC 7507 1946 99598 species 1 0 Calothrix sp. NIES-4101 3020 2005461 species 1 1954171 0 2465 Calothrix sp. NIES-2098 32054 2378 Calothrix parietina 0 1 species 1162 176 Nostocaceae 31919 0 18 1 family 1177 197 Nostoc 18947 0 1 10 genus 1 species Nostoc flagelliforme 2078 0 1306274 1 species Nostoc punctiforme 2130 0 272131 7 no rank 2593658 14542 0 0 1761 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 species 1 103690 0 Nostoc sp. PCC 7120 1852 species 1 1869241 1991 Nostoc sp. CENA543 0 1 species 1261031 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 2109 0 1 species 0 Nostoc sp. PCC 7107 2125 317936 species 1 1751286 2488 Nostoc sp. NIES-3756 0 1 species 28072 2216 Nostoc sp. PCC 7524 0 1 species 81 1163 Anabaena 8561 0 1 4 genus 1 species 2967 Anabaena cylindrica 0 1165 2619674 0 5513 no rank 2 2591 Anabaena sp. 90 0 46234 1 species 2922 Anabaena sp. WA102 0 1647413 1 species 8 264688 0 Trichormus 4235 genus 1 3 1164 0 2252 Trichormus azollae species 1 1 species Trichormus variabilis 1975 0 264691 1219117 0 2055 no rank 1 species 1 0 Nostocales cyanobacterium HT-58-2 2055 1940762 1185 72 4011 Rivulariaceae 0 3 1 family 2 1 genus 373984 9 Rivularia 3939 0 no rank 1 2676603 0 3930 0 3930 Rivularia sp. PCC 7116 373994 species 1 0 53001 1301283 subclass 47 Oscillatoriales 15478 0 153 1150 21 1 order Cyanothecaceae 824 0 1892249 106 3 1 family 0 718 Cyanothece 113 43988 genus 2 1 1 no rank 2649277 605 0 0 605 Cyanothece sp. PCC 7425 395961 species 1 Microcoleaceae 6850 0 1892252 40 5 1 family 9 1205 0 Trichodesmium 5816 genus 1 2 species 1 0 Trichodesmium erythraeum 5807 1206 1 2 genus 994 Microcoleus 0 37 44471 1 no rank 957 0 2642155 957 Microcoleus sp. PCC 7113 0 1173027 1 species family 1 3 0 553 Coleofasciculaceae 30 1892251 genus 2 1 14 63132 0 523 Geitlerinema 509 0 2648775 1 no rank species 1 0 Geitlerinema sp. PCC 7407 509 1173025 1892255 13 0 Gomontiellaceae 2229 family 1 3 0 2216 Crinalium 10 241421 genus 2 1 Crinalium epipsammum 2206 0 241425 1 species 0 Oscillatoriaceae 4869 75 1892254 family 6 1 genus 2 1 0 Moorea 2470 1155738 39 1155739 0 2431 Moorea producens species 1 Oscillatoria 2324 0 39 1158 1 3 genus species 1 0 Oscillatoria acuminata 1033 118323 1 species 482564 Oscillatoria nigro-viridis 1252 0 Chroococcales 37523 0 1118 100 1 26 order 4 1 family 4697 Microcystaceae 0 43 1890449 27 1125 0 4654 Microcystis genus 3 1 1 species Microcystis aeruginosa 3103 0 1126 1 no rank 1524 0 2643300 Microcystis sp. MC19 1524 0 1967666 1 species 0 Cyanobacteriaceae 3538 15 1890452 family 3 1 2 1 genus 3523 Cyanobacterium 0 6 102234 379064 0 Cyanobacterium aponinum 3517 species 1 0 14456 Chroococcaceae 99 1890464 family 1 8 genus 3 1 0 7877 Geminocystis 669357 55 2625037 7822 0 2 no rank 1617448 Geminocystis sp. NIES-3709 3598 0 1 species 1 species Geminocystis sp. NIES-3708 4224 0 1615909 genus 2 1 0 Gloeocapsa 1781 102231 5 no rank 1 2623012 0 1776 Gloeocapsa sp. PCC 7428 1776 0 1173026 1 species genus 2 1 268175 10 0 4699 Chondrocystis no rank 1 2648896 0 4689 species 1 2005460 0 4689 Chondrocystis sp. NIES-4102 17 1890450 Aphanothecaceae 14732 0 1 10 family 1 2 genus 8 1453359 3502 Candidatus Atelocyanobacterium 0 species 1 713887 0 Candidatus Atelocyanobacterium thalassa 3494 1467 0 92682 2 no rank Halothece 1467 0 76023 10 2 1 genus no rank 1 0 1457 2632878 1457 Halothece sp. PCC 7418 0 65093 1 species 0 4489 28070 genus 2 1 species 2546359 2352 0 1 strain 497965 2352 Cyanothece sp. PCC 7822 0 2137 0 2546356 1 species 2137 Cyanothece sp. PCC 7424 0 65393 1 strain 2546365 0 3179 genus 2 2546366 0 3179 species 2 1596 Cyanothece sp. PCC 8802 0 395962 1 strain strain 1 0 1583 Cyanothece sp. PCC 8801 41431 0 2078 263510 genus 1 2546360 0 2078 species 1 Cyanothece sp. ATCC 51142 2078 0 43989 1 strain Gloeobacteria 1366 0 7 307596 6 1 class 5 1 order 13 307595 1359 Gloeobacterales 0 1890422 32 1346 Gloeobacteraceae 0 4 1 family 1 3 genus 33071 11 Gloeobacter 1314 0 0 Gloeobacter kilaueensis 718 1416614 species 1 33072 585 Gloeobacter violaceus 0 1 species 59 1 order 14416841 Synechococcales 0 1890424 412 2 1890436 Pseudanabaenaceae 1271 0 1 3 family genus 2 1 0 Pseudanabaena 1269 1152 4 1 no rank 1265 0 2593292 species 1 82654 0 Pseudanabaena sp. PCC 7367 1265 2303730 0 764 family 2 2 1 genus 7 170610 Halomicronema 764 0 species 1 0 757 Halomicronema hongdechloris 1209493 0 2372 Merismopediaceae 1890428 8 family 1 5 genus 1 4 0 2364 Synechocystis 73 1142 2640012 0 2291 no rank 3 731 Synechocystis sp. IPPAS B-1465 0 2116702 1 species 0 731 Synechocystis sp. PCC 6803 1148 species 1 Synechocystis sp. PCC 6714 829 0 1147 1 species 34 1 family 111 1890426 Synechococcaceae 273081 0 26 1 genus Synechococcus 265576 0 1710 1129 1 species 32046 Synechococcus elongatus 600 0 1 species Synechococcus lividus 476 0 33070 23 no rank 262790 0 2626047 0 425 Synechococcus sp. JA-2-3B'a(2-13) 321332 species 1 1916956 Synechococcus sp. SynAce01 1842 0 1 species 1 species 596 Synechococcus sp. PCC 7002 0 32049 84588 6264 Synechococcus sp. WH 8102 0 1 species 1393 Synechococcus sp. CC9902 0 316279 1 species species 1 0 Synechococcus sp. PCC 8807 527 195248 1 species Synechococcus sp. RCC307 2120 0 316278 1 species Synechococcus sp. CC9605 72265 0 110662 1 species 6243 Synechococcus sp. WH 8103 0 29410 64471 1576 Synechococcus sp. CC9311 0 1 species 0 599 Synechococcus sp. NIES-970 1827144 species 1 species 1 195498 0 Synechococcus sp. PCC 7117 675 1173263 Synechococcus sp. PCC 7502 2136 0 1 species 374982 Synechococcus sp. PCC 73109 773 0 1 species 195253 0 Synechococcus sp. PCC 6312 616 species 1 species 1 585425 0 Synechococcus sp. KORDI-52 21443 species 1 0 Synechococcus sp. JA-3-3Ab 300 321327 1350461 628 Synechococcus sp. UTEX 2973 0 1 species 0 Synechococcus sp. WH 7803 2020 32051 species 1 species 1 585423 0 2524 Synechococcus sp. KORDI-49 374981 555 Synechococcus sp. PCC 7003 0 1 species 1280380 54765 Synechococcus sp. KORDI-100 0 1 species Synechococcus sp. WH 8109 82505 0 166314 1 species genus 1 3 167375 235 0 5525 Cyanobium no rank 1 0 2416 2627006 1851505 2416 Cyanobium sp. NIES-981 0 1 species 1 species 2874 Cyanobium gracile 0 59930 146785 1 Thermosynechococcus 564 0 2 1 genus 146786 0 563 Thermosynechococcus elongatus species 1 1 2 genus Dactylococcopsis 1305 0 2 13034 292566 1303 Dactylococcopsis salina 0 1 species family 6 1 33 1890438 0 Leptolyngbyaceae 3944 47 47251 3911 Leptolyngbya 0 1 5 genus no rank 3 0 2856 2650499 0 Leptolyngbya sp. PCC 7376 1595 111781 species 1 1752064 777 Leptolyngbya sp. NIES-3755 0 1 species 0 484 Leptolyngbya sp. O-77 1080068 species 1 1184 1008 Leptolyngbya boryana 0 1 species family 1 5 66 1213 0 Prochloraceae 14133385 genus 1 4 1218 701 0 14133319 Prochlorococcus 0 3443058 2627481 no rank 2 species 1 0 3424112 Prochlorococcus sp. MIT 0604 1501268 0 18946 Prochlorococcus sp. MIT 0801 1501269 species 1 1219 Prochlorococcus marinus 10689560 0 1 species 1 3 family 1 1890429 1612 Acaryochloridaceae 0 2 1 genus 19 155977 1611 Acaryochloris 0 1 species Acaryochloris marina 1592 0 155978 8 1 order Pleurocapsales 10329 0 52604 12 family 1 3 0 1313 Hyellaceae 23 1890500 Pleurocapsa 1290 0 44474 2 1 2 genus 1 species 54308 1288 Pleurocapsa minor 0 0 9004 Dermocarpellaceae 39 1890498 family 1 4 genus 3 1 0 Stanieria 8965 54 102115 1 species Stanieria cyanosphaera 4378 0 102116 no rank 1 2642663 0 4533 0 4533 Stanieria sp. NIES-3757 1807358 species 1 0 129786 Tenericutes 20 544448 phylum 1 102 0 123073 Mollicutes 299 31969 class 97 1 1 39 order 186328 121 Entomoplasmatales 54910 0 family 1 14 0 16963 Entomoplasmataceae 57 33925 254 46239 0 Mesoplasma 12100 genus 1 8 324078 0 1675 Mesoplasma coleopterae species 1 2149 1594 Mesoplasma entomophilum 0 1 species 216427 0 1614 Mesoplasma chauliocola species 1 species 1 0 Mesoplasma lactucae 1094 138853 1 species 2151 Mesoplasma florum 2947 0 219745 1582 Mesoplasma tabanidae 0 1 species species 1 225999 0 1340 Mesoplasma syrphidae 0 4806 Entomoplasma 46238 63 genus 5 1 74700 Entomoplasma freundtii 569 0 1 species 1 species 214888 Entomoplasma luminosum 1130 0 species 1 215578 0 1465 Entomoplasma somnilux species 1 81459 0 Entomoplasma melaleucae 1579 Spiroplasmataceae 37826 0 102 2131 24 1 family 1 23 genus 37724 Spiroplasma 0 534 2132 2137 Spiroplasma apis 1286 0 1 species species 1 0 Spiroplasma cantharicola 2555 362837 2133 1555 Spiroplasma citri 0 1 species 216933 1304 Spiroplasma chrysopicola 0 1 species 1 species 1314 Spiroplasma syrphidicola 0 216945 1114980 Spiroplasma atrichopogonis 941 0 1 species 1 species 2404 Spiroplasma floricola 0 216937 2 no rank 2637901 2306 0 1898044 1152 Spiroplasma sp. TU-14 0 1 species 1 species 1154 Spiroplasma sp. NBRC 100390 0 1914410 0 2364 Spiroplasma taiwanense 2145 species 1 species 1 0 1565 Spiroplasma monobiae 2136 species 1 0 Spiroplasma turonicum 2126 216946 216934 0 Spiroplasma corruscae 1829 species 1 0 1255 Spiroplasma sabaudiense 216944 species 1 species 1 216936 0 2222 Spiroplasma diminutum 216938 0 2007 Spiroplasma helicoides species 1 2426 Spiroplasma litorale 0 216942 1 species 216935 2202 Spiroplasma culicicola 0 1 species 0 1726 Spiroplasma kunkelii 47834 species 1 0 Spiroplasma clarkii 1736 2139 species 1 species 1 2144 0 916 Spiroplasma mirum species 1 315358 0 1151 Spiroplasma eriocheiris 186329 50 13097 Acholeplasmatales 0 13 1 order family 1 12 38 2146 0 Acholeplasmataceae 13047 0 Candidatus Phytoplasma 5590 100 33926 genus 1 6 3204 0 85620 3 species group 229545 Aster yellows witches'-broom phytoplasma 1059 0 1 species 1 species Onion yellows phytoplasma 1119 0 100379 0 Maize bushy stunt phytoplasma 1026 202462 species 1 1 species group 1227 0 85630 species 1 0 Candidatus Phytoplasma mali 1227 37692 1059 0 85632 1 species group 59748 0 1059 Candidatus Phytoplasma australiense species 1 genus 1 5 57 2147 0 7419 Acholeplasma species 1 35623 0 Acholeplasma oculi 1932 species 1 38986 0 Acholeplasma palmae 2422 0 Acholeplasma laidlawii 1782 2148 species 1 1 species Acholeplasma brassicae 1226 0 61635 order 1 44 2085 157 0 54767 Mycoplasmatales 54610 Mycoplasmataceae 0 2092 141 43 1 family 0 Mycoplasma 35416 481 2093 genus 1 27 1910 Mycoplasma yeatsii 0 51365 1 species 1 species 1543 Mycoplasma hyopneumoniae 0 2099 1 species Mycoplasma ovis 440 0 171632 45362 1211 Mycoplasma bovoculi 0 1 species species group 3 656088 0 9283 1 species 2105 2310 Mycoplasma leachii 0 0 2394 Mycoplasma capricolum 2095 species 1 Mycoplasma mycoides 4579 0 2102 1 species 1 species 174 Mycoplasma pneumoniae 0 2104 2097 659 Mycoplasma genitalium 0 1 species 2118 1844 Mycoplasma mobile 0 1 species no rank 1 2683645 0 1195 1 species 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) 1195 0 28227 0 1984 Mycoplasma penetrans species 1 29501 660 Mycoplasma haemofelis 0 1 species Mycoplasma flocculare 863 0 2128 1 species species 1 2100 0 1654 Mycoplasma hyorhinis 0 1776 Mycoplasma hominis 2098 species 1 984991 0 821 Mycoplasma parvum species 1 50052 0 Mycoplasma crocodyli 1484 species 1 1 species 2123 Mycoplasma putrefaciens 1706 0 0 Mycoplasma gallisepticum 1129 2096 species 1 Mycoplasma haemocanis 543 0 136241 1 species 86660 0 938 Mycoplasma dispar species 1 1 species Mycoplasma canadense 1337 0 29554 2111 0 644 Mycoplasma arthritidis species 1 65123 0 Mycoplasma wenyonii 410 species 1 1 species Mycoplasma suis 727 0 57372 3 1 genus Ureaplasma 2631 0 4 2129 Ureaplasma parvum 1319 0 134821 1 species species 1 2130 0 1308 Ureaplasma urealyticum genus 12 0 16422 2767358 1 species Mycoplasma bovigenitalium 883 0 2112 1 species 29553 Mycoplasma bovirhinis 1032 0 2110 1488 Mycoplasma agalactiae 0 1 species 1 species 1600 Mycoplasma canis 0 29555 species 1 0 Mycoplasma cynos 1605 171284 0 976 Mycoplasma pullorum 48003 species 1 species 1 2107 0 Mycoplasma pulmonis 1393 0 1363 Mycoplasma arginini 2094 species 1 species 1 0 898 Mycoplasma californicum 2113 1 species 2109 Mycoplasma synoviae 1005 0 0 1452 Mycoplasma fermentans 2115 species 1 Mycoplasma bovis 2727 0 28903 1 species 2 no rank 713063 4403 0 1911683 Tenericutes bacterium MZ-XQ 2056 0 1 species species 1 1911684 0 2347 Tenericutes bacterium MO-XQ 2290 0 2799557 2 no rank 1912503 4 2290 Candidatus Izimaplasma 0 2 1 genus 2624196 0 2286 no rank 1 species 1 1541959 0 2286 Candidatus Izimaplasma sp. HR1 1 no rank 423 0 1859062 423 0 262406 1 genus species 1 166501 0 Thermobaculum terrenum 423 1 654 phylum 415067 Actinobacteria 0 55 201174 1 7 class 4 84992 3397 Acidimicrobiia 0 order 1 6 0 Acidimicrobiales 3393 84993 43 Acidimicrobiaceae 933 0 84994 14 1 3 family 54 53634 Acidimicrobium 919 0 2 1 genus 53635 865 Acidimicrobium ferrooxidans 0 1 species 2448023 2417 0 2 family genus 2 1 37 682522 0 Ilumatobacter 2417 Ilumatobacter coccineus 2380 0 467094 1 species Actinobacteria 396128 0 1384 1760 599 1 class 41 1 order 35646 Pseudonocardiales 0 85010 96 35550 Pseudonocardiaceae 0 367 2070 40 1 family 43356 39 0 1242 Kutzneria genus 2 1 species 1 0 1203 Kutzneria albida 43357 1509 Lentzea 0 165301 9 1 2 genus 1 species 1586287 Lentzea guizhouensis 1500 0 genus 1 2 0 1493 Saccharothrix 6 2071 Saccharothrix espanaensis 1487 0 103731 1 species genus 6 1 65496 62 0 4840 Actinoalloteichus 340345 643 Actinoalloteichus hymeniacidonis 0 1 species species 1 1470176 0 1037 Actinoalloteichus hoggarensis 0 1220 Actinoalloteichus sp. ADI127-7 1612552 species 1 0 1878 2644606 no rank 2 2072503 874 Actinoalloteichus sp. AHMU CJ021 0 1 species 1 species 1004 Actinoalloteichus sp. GBA129-24 0 1612551 836 Prauserella 0 4 142577 1 2 genus 1 species 832 Prauserella marina 0 530584 1 8 genus Pseudonocardia 8928 0 174 1847 7294 0 2619320 6 no rank species 1 0 Pseudonocardia sp. AL041005-10 1205 445576 1 species 1189 Pseudonocardia sp. HH130629-09 0 1641402 1096868 1093 Pseudonocardia sp. EC080625-04 0 1 species 1 species 1690815 1230 Pseudonocardia sp. HH130630-07 0 0 Pseudonocardia sp. EC080610-09 1317 1688404 species 1 1 species 1096856 1260 Pseudonocardia sp. EC080619-01 0 species 1 0 1460 Pseudonocardia dioxanivorans 240495 genus 2 1 0 1240 Saccharopolyspora 1 1835 1836 0 1239 Saccharopolyspora erythraea species 1 genus 3 1 0 Actinosynnema 3127 45 40566 0 1578 Actinosynnema mirum 40567 species 1 Actinosynnema pretiosum 1504 0 42197 1 species Alloactinosynnema 1110 0 1 674734 2 1 genus 0 1109 2636053 no rank 1 1653480 1109 Alloactinosynnema sp. L-07 0 1 species 99 1813 Amycolatopsis 8848 0 1 7 genus Amycolatopsis methanolica 1271 0 1814 1 species species 1 0 Amycolatopsis mediterranei 1631 33910 Amycolatopsis orientalis 2264 0 31958 1 species 208439 1194 Amycolatopsis japonica 0 1 species 2618356 0 2389 no rank 2 1896961 1222 Amycolatopsis sp. AA4 0 1 species 0 Amycolatopsis sp. BJA-103 1167 1911175 species 1 1 2 genus 6 2029 Kibdelosporangium 1425 0 species 1 0 Kibdelosporangium phytohabitans 1419 860235 0 585 1851 genus 1 0 Saccharomonospora viridis 585 1852 species 1 Actinopolysporales 526 0 622450 3 1 4 order 7 622451 0 Actinopolysporaceae 523 family 1 3 0 516 Actinopolyspora 1849 5 genus 1 2 414996 0 511 Actinopolyspora erythraea species 1 order 147 1 85006 388 0 Micrococcales 62453 1 6 family Cellulomonadaceae 3753 0 11 85016 1 5 genus 1707 21 3742 Cellulomonas 0 1 species 1711 Cellulomonas flavigena 932 0 1 species 1708 Cellulomonas fimi 1085 0 species 1 11 0 Cellulomonas gilvus 767 937 0 2620175 1 no rank 1 species 2003551 937 Cellulomonas sp. PSBB021 0 family 1 9 0 3350 Intrasporangiaceae 85021 24 1 2 genus Arsenicicoccus 892 0 4 267408 0 888 2663846 no rank 1 0 888 Arsenicicoccus sp. oral taxon 190 1658671 species 1 6 265976 828 Serinicoccus 0 2 1 genus 1 species 822 Serinicoccus sp. JLT9 0 1758689 Intrasporangium 758 0 2 53357 1 2 genus 53358 0 Intrasporangium calvum 756 species 1 848 Janibacter 0 52 53457 1 2 genus 0 Janibacter indicus 796 857417 species 1 Microbacteriaceae 24929 0 218 85023 49 1 family 1 2 genus 6 447237 1550 Frondihabitans 0 no rank 1 2626248 0 1544 species 1 1795630 0 Frondihabitans sp. PAMC 28766 1544 Microcella 604 0 337004 6 1 2 genus 1 species 279828 598 Microcella alkaliphila 0 1705353 330 0 1 genus 708131 0 Aurantimicrobium minutum 330 species 1 1 2 genus 110932 3 1380 Leifsonia 0 1575 1377 Leifsonia xyli 0 1 species 1 2 genus 518733 4 Microterricola 729 0 Microterricola viridarii 725 0 412690 1 species 3 no rank 874 0 1655488 0 874 1655489 clade 3 0 874 Rhodoluna 13 529883 genus 3 1 1 species Candidatus Rhodoluna planktonica 382 0 535712 1 species 529884 Rhodoluna lacicola 479 0 genus 14 1 0 8973 Microbacterium 142 33882 0 5301 2609290 no rank 8 0 Microbacterium sp. XT11 572 367477 species 1 species 1 0 Microbacterium sp. 1.5R 588 1916917 1714373 1113 Microbacterium sp. No. 7 0 1 species 611 Microbacterium sp. CGR1 0 1696072 1 species 576 Microbacterium sp. TPU 3598 0 1938334 1 species species 1 0 Microbacterium sp. str. 'China' 526 2103230 1 species 1795053 644 Microbacterium sp. PAMC 28756 0 1906742 0 671 Microbacterium sp. BH-3-3-3 species 1 species 1 162426 0 Microbacterium hominis 749 1 species 300019 666 Microbacterium paludicola 0 2033 Microbacterium testaceum 868 0 1 species 36805 Microbacterium aurum 674 0 1 species 84292 573 Microbacterium chocolatum 0 1 species 1 2 genus 3 1434032 Pontimonas 269 0 1159327 Pontimonas salivibrio 266 0 1 species genus 4 1 0 2303 Curtobacterium 2034 27 257496 1472 0 2 no rank 754 Curtobacterium sp. MR_MD2014 0 1561023 1 species species 1 1905847 0 718 Curtobacterium sp. BH-2-1-1 Curtobacterium pusillum 804 0 69373 1 species 1759331 2 Cnuibacter 858 0 1 2 genus 1 species 856 Cnuibacter physcomitrellae 0 1619308 genus 3 1 47 69578 0 1354 Cryobacterium 670052 680 Cryobacterium arcticum 0 1 species 627 0 2649013 1 no rank species 1 1978566 0 Cryobacterium sp. LW097 627 genus 6 1 108 1573 0 3474 Clavibacter 0 3366 Clavibacter michiganensis 651 28447 species 5 1 1 subspecies 31963 Clavibacter nebraskensis 675 0 33014 0 Clavibacter insidiosus 618 subspecies 1 0 774 Clavibacter sepedonicus 31964 subspecies 1 subspecies 1 0 Clavibacter capsici 648 1874630 1 2 genus 5 33877 1052 Agromyces 0 species 1 0 Agromyces aureus 1047 453304 genus 3 1 33886 5 0 Rathayibacter 961 33888 Rathayibacter tritici 553 0 1 species 1 species 403 Rathayibacter toxicus 0 145458 1 3 family 6 145360 Sanguibacteraceae 900 0 6 60919 894 Sanguibacter 0 1 2 genus 60920 888 Sanguibacter keddieii 0 1 species 380 Dermatophilaceae 0 85018 2 1 3 family 2 1 genus Dermatophilus 378 0 1 1862 Dermatophilus congolensis 377 0 1863 1 species family 7 1 0 Dermacoccaceae 2060 19 145357 2 1 genus 944 Luteipulveratus 0 2 745364 1 species 571913 Luteipulveratus mongoliensis 942 0 genus 1 2 6 57495 0 Dermacoccus 630 species 1 1274 0 Dermacoccus nishinomiyaensis 624 57499 2 467 Kytococcus 0 2 1 genus species 1 0 Kytococcus sedentarius 465 1276 11 1 family Dermabacteraceae 5031 0 85020 37 1 36739 0 Dermabacter 254 genus 2 1 species 1 1630135 0 253 Dermabacter vaginalis 1 6 genus 4361 Brachybacterium 0 52 43668 1 species Brachybacterium sp. VR2415 604 0 2017485 no rank 1 2623841 0 761 1 species 761 Brachybacterium sp. P6-10-X1 0 1903186 2017484 0 1410 Brachybacterium sp. VM2412 species 1 43669 0 Brachybacterium faecium 758 species 1 1331682 Brachybacterium ginsengisoli 776 0 1 species Devriesea 379 0 472568 85 1 2 genus 0 Devriesea agamarum 294 472569 species 1 family 9 1 85017 41 0 Promicromonosporaceae 5363 254250 16 Isoptericola 2091 0 1 3 genus 1 species 139208 990 Isoptericola variabilis 0 Isoptericola dokdonensis 1085 0 372663 1 species 157920 16 2306 Cellulosimicrobium 0 3 1 genus species 1 1710 0 1180 Cellulosimicrobium cellulans 1110 0 2624466 1 no rank 1 species Cellulosimicrobium sp. TH-20 1110 0 1980001 1 2 genus Xylanimonas 925 0 8 186188 Xylanimonas cellulosilytica 917 0 186189 1 species 85019 13 877 Brevibacteriaceae 0 1 3 family 1 2 genus 10 1696 864 Brevibacterium 0 species 1 0 854 Brevibacterium linens 1703 2 family 85022 293 0 0 293 Jonesia 43673 1 genus 1 2 43674 0 292 Jonesia denitrificans species 1 1268 117 0 Micrococcaceae 13698 family 1 39 2 32207 Rothia 625 0 1 3 genus 2047 0 Rothia dentocariosa 248 species 1 0 375 Rothia mucilaginosa 43675 species 1 0 231 1645 genus 1 species 1 1646 0 231 Renibacterium salmoninarum 8 596707 Sinomonas 795 0 2 1 genus 1 species Sinomonas atrocyanea 787 0 37927 1 4 genus 57493 16 1543 Kocuria 0 species 1 0 Kocuria rhizophila 379 72000 species 1 446860 0 631 Kocuria flava 0 517 Kocuria palustris 71999 species 1 5 1269 Micrococcus 507 0 1 2 genus 502 Micrococcus luteus 0 1270 1 species genus 1 2078575 0 247 species 1 1618207 0 247 Arthrobacter sp. IHBB 11108 1 2 genus 483 Paenarthrobacter 0 1 1742992 0 482 Paenarthrobacter aurescens 43663 species 1 Pseudarthrobacter 1415 0 17 1742993 4 1 genus 1 species 464 Pseudarthrobacter chlorophenolicus 0 85085 1 species Pseudarthrobacter sulfonivorans 435 0 121292 species 1 361575 0 499 Pseudarthrobacter phenanthrenivorans 1 15 genus 196 1663 Arthrobacter 6917 0 no rank 12 0 5509 235627 0 Arthrobacter sp. ATCC 21022 329 1771959 species 1 0 Arthrobacter sp. ERGS1:01 542 1704044 species 1 species 1 0 951 Arthrobacter sp. PGP41 2079227 species 1 0 285 Arthrobacter sp. Rue61a 1118963 0 Arthrobacter sp. LS16 439 1690248 species 1 1 species 1849032 Arthrobacter sp. U41 529 0 species 1 1806905 0 423 Arthrobacter sp. ZXY-2 species 1 290399 0 377 Arthrobacter sp. FB24 1494608 Arthrobacter sp. PAMC 25486 419 0 1 species 1357915 0 Arthrobacter sp. QXT-31 500 species 1 1 species 393 Arthrobacter sp. YC-RL1 0 1652545 0 Arthrobacter sp. YN 322 2020486 species 1 0 Arthrobacter alpinus 693 656366 species 1 37928 0 519 Arthrobacter crystallopoietes species 1 1 2 genus 552 Glutamicibacter 0 4 1742989 1 species Glutamicibacter arilaitensis 548 0 256701 1868332 3 0 Neomicrococcus 266 genus 1 2 species 1 556325 0 263 Neomicrococcus aestuarii 577468 0 403 no rank 2 6 2038 0 403 Tropheryma genus 2 1 2039 0 397 Tropheryma whipplei species 1 family 3 1 125316 7 0 1028 Beutenbergiaceae genus 2 1 0 1021 Beutenbergia 14 84756 species 1 0 1007 Beutenbergia cavernae 84757 0 6432 Frankiales 46 85013 order 7 1 6 1 family Frankiaceae 6386 0 74712 44 5 1 genus Frankia 6342 0 1854 72 1 species Frankia alni 2006 0 1859 106370 Frankia casuarinae 1140 0 1 species no rank 1 0 1426 2632575 species 1 0 Frankia sp. EAN1pec 1426 298653 298654 1698 Frankia inefficax 0 1 species 1 12 order Candidatus Nanopelagicales 12508 0 2039638 56 12452 0 2162846 11 family 7 1 genus 51 622681 Candidatus Planktophila 6018 0 1884907 0 1004 Candidatus Planktophila vernalis species 1 species 1 1884913 0 1023 Candidatus Planktophila lacus 0 Candidatus Planktophila versatilis 1053 1884905 species 1 species 1 1884904 0 Candidatus Planktophila sulfonica 537 species 1 1884914 0 Candidatus Planktophila dulcis 1140 species 1 0 1210 Candidatus Planktophila limnetica 573600 genus 4 1 2039639 29 0 6434 Candidatus Nanopelagicus 1 species 2101 Candidatus Nanopelagicus limnes 0 1884634 1884916 Candidatus Nanopelagicus abundans 2464 0 1 species 1 species Candidatus Nanopelagicus hibericus 1840 0 1884915 0 3168 Geodermatophilales 11 1643682 order 8 1 0 Geodermatophilaceae 3157 85030 125 family 7 1 0 1053 Modestobacter 88138 18 genus 1 2 species 1 0 Modestobacter marinus 1035 477641 genus 2 1 8 1860 0 Geodermatophilus 1053 species 1 0 Geodermatophilus obscurus 1045 1861 0 Blastococcus 926 38501 9 genus 1 2 138336 0 Blastococcus saxobsidens 917 species 1 3 1643683 0 Acidothermales 537 order 1 4 3 1 family Acidothermaceae 534 0 85032 2 genus 2 1 0 Acidothermus 532 18 28048 28049 Acidothermus cellulolyticus 514 0 1 species order 26 1 0 Bifidobacteriales 8123 85004 24 1 25 family 71 31953 Bifidobacteriaceae 8099 0 genus 2 1 0 315 Scardovia 1 196081 species 1 0 314 Scardovia inopinata 78259 2701 1264 0 1 genus species 1 2702 0 Gardnerella vaginalis 1264 196082 2 143 Parascardovia 0 2 1 genus 0 141 Parascardovia denticolens 78258 species 1 89 1678 Bifidobacterium 6306 0 1 19 genus 1 species 216816 Bifidobacterium longum 937 0 35760 0 546 Bifidobacterium choerinum species 1 1 species 1691 Bifidobacterium indicum 140 0 species 1 0 378 Bifidobacterium actinocoloniiforme 638619 166 Bifidobacterium pseudocatenulatum 0 28026 1 species 1 species 1694 565 Bifidobacterium pseudolongum 0 0 Bifidobacterium dentium 263 1689 species 1 1687 0 Bifidobacterium coryneforme 126 species 1 0 Bifidobacterium bifidum 390 1681 species 1 0 263 Bifidobacterium angulatum 1683 species 1 0 Bifidobacterium thermophilum 212 33905 species 1 species 1 0 Bifidobacterium adolescentis 269 1680 Bifidobacterium animalis 378 0 28025 1 species 1684 0 203 Bifidobacterium asteroides species 1 species 1 0 484 Bifidobacterium scardovii 158787 1686 151 Bifidobacterium catenulatum 403 0 1 2 species 0 Bifidobacterium kashiwanohense 252 630129 subspecies 1 1685 0 494 Bifidobacterium breve species 1 2037 18 Actinomycetales 5460 0 1 19 order 132 2049 0 5442 Actinomycetaceae family 1 18 3 2050 0 Mobiluncus 292 genus 1 2 0 289 Mobiluncus curtisii 2051 species 1 1 2 genus 2 28263 Arcanobacterium 390 0 0 388 Arcanobacterium haemolyticum 28264 species 1 9 1 genus Actinomyces 3724 0 128 1654 0 Actinomyces radicidentis 784 111015 species 1 1 species 255 Actinomyces pacaensis 0 1852377 species 1 1960083 0 372 Actinomyces gaoshouyii species 1 544580 0 443 Actinomyces oris 2609248 1558 0 3 no rank 0 Actinomyces sp. Chiba101 508 1851395 species 1 species 1 0 Actinomyces sp. oral taxon 897 378 2081702 712122 0 672 Actinomyces sp. oral taxon 414 species 1 1912795 0 Actinomyces sp. VUL4_3 184 species 1 2 1 genus 384 Trueperella 0 4 1069494 1 species Trueperella pyogenes 380 0 1661 1 genus 1653174 264 0 1 species 264 Actinotignum schaalii 0 59505 0 256 2529408 genus 1 52773 0 Actinomyces meyeri 256 species 1 order 1 4 1 622452 0 1151 Kineosporiales Kineosporiaceae 1150 0 9 83778 3 1 family genus 1 2 8 33981 0 Kineococcus 1141 131568 0 1133 Kineococcus radiotolerans species 1 0 Streptomycetales 118018 219 85011 order 1 82 2062 393 0 117799 Streptomycetaceae family 81 1 1 75 genus 109580 Streptomyces 0 2240 1883 0 Streptomyces autolyticus 2425 75293 species 1 species 1 0 Streptomyces lincolnensis 1525 1915 0 Streptomyces reticuli 1686 1926 species 1 54571 Streptomyces venezuelae 2822 0 1 species 0 1156 Streptomyces pristinaespiralis 38300 species 1 0 Streptomyces violaceusniger 1349 68280 species 1 1 species 67267 1418 Streptomyces alboflavus 0 species 1 2049881 0 Streptomyces sp. XZHG99 1088 0 1038 Streptomyces violaceoruber 1935 species 1 species 1 0 1034 Streptomyces xinghaiensis 1038928 1 species 1916 Streptomyces lividans 1307 0 species 1 1616117 0 1605 Streptomyces formicae 0 Streptomyces lavendulae 1275 1914 species 1 1 species 1143 Streptomyces fulvissimus 0 68202 2706 Streptomyces albus 0 1888 1 species 1 species 362257 Streptomyces vietnamensis 1579 0 species 1 1355015 0 860 Streptomyces pluripotens 629295 2136 0 2 species group species subgroup 1 1482558 0 1137 1908 Streptomyces globisporus 1137 0 1 species 1482596 999 0 1 species subgroup 1 species Streptomyces griseus 999 0 1911 1 species Streptomyces ambofaciens 1327 0 1889 1189 Streptomyces puniciscabiei 0 164348 1 species 29303 Streptomyces cattleya 1130 0 1 species 24 no rank 2593676 31270 0 1 species 1725411 Streptomyces sp. CdTB01 1563 0 1 species 2059884 Streptomyces sp. CMB-StM0423 1549 0 1751294 0 Streptomyces sp. 4F 1091 species 1 2094021 0 1203 Streptomyces sp. WAC00288 species 1 0 Streptomyces sp. TN58 1126 234612 species 1 1561022 Streptomyces sp. CCM_MD2014 1192 0 1 species species 1 0 1273 Streptomyces sp. Sge12 1972846 862751 0 931 Streptomyces sp. SirexAA-E species 1 species 1 0 Streptomyces sp. MOE7 1264 1961713 0 Streptomyces sp. 3211 1601 1964449 species 1 species 1 0 1258 Streptomyces sp. fd1-xmd 1812480 0 Streptomyces sp. PAMC 26508 965 1265601 species 1 2135430 Streptomyces sp. P3 1530 0 1 species 1 species 1849967 1781 Streptomyces sp. SAT1 0 444103 1410 Streptomyces sp. CNQ-509 0 1 species species 1 1649184 0 Streptomyces sp. CFMR 7 1077 species 1 0 Streptomyces sp. M56 1769 1495638 species 1 465541 0 Streptomyces sp. Mg1 1304 species 1 0 1413 Streptomyces sp. RTd22 1841249 1 species Streptomyces sp. CLI2509 1139 0 1984801 1837283 0 978 Streptomyces sp. S8 species 1 species 1 1661694 0 Streptomyces sp. Tue 6075 994 1 species Streptomyces sp. 769 1394 0 1262452 1 species Streptomyces sp. FR-008 1465 0 206662 68214 0 1284 Streptomyces griseochromogenes species 1 species 1 68249 0 2603 Streptomyces pactum 193462 0 Streptomyces niveus 1306 species 1 0 Streptomyces malaysiensis 1422 92644 species 1 1 species Streptomyces avermitilis 1432 0 33903 species 1 42684 0 1132 Streptomyces collinus 285473 0 Streptomyces rubrolavendulae 1039 species 1 1901 Streptomyces clavuligerus 1034 0 1 species species 1 0 1078 Streptomyces chartreusis 1969 0 3517 Streptomyces lydicus 47763 species 1 1 species 1940 Streptomyces albireticuli 1245 0 1 species 379067 Streptomyces bingchenggensis 1804 0 553510 1380 Streptomyces gilvosporeus 0 1 species 1437453 0 1189 Streptomyces leeuwenhoekii species 1 1907 Streptomyces glaucescens 1136 0 1 species species 1 0 1001 Streptomyces pratensis 1169025 species 1 146923 0 1126 Streptomyces parvulus 1477431 4096 0 2 species group 1168 Streptomyces sampsonii 0 42239 1 species 0 2928 Streptomyces coelicolor 1902 species 1 species 1 408015 0 Streptomyces xiamenensis 941 68570 0 Streptomyces albulus 3889 species 1 1930 1481 Streptomyces scabiei 0 1 species species 1 0 Streptomyces sp. S10(2016) 1129 1783515 species 1 1912 0 Streptomyces hygroscopicus 3083 1 species 1642299 Streptomyces alfalfae 1519 0 1 species 1950 1063 Streptomyces peucetius 0 Streptomyces noursei 1314 0 1971 1 species 0 1029 Streptomyces cyaneogriseus 68192 species 1 1 5 genus Kitasatospora 7826 0 2063 51 species 1 1894 0 1190 Kitasatospora aureofaciens 1 no rank 1587 0 2633591 0 1587 Kitasatospora sp. MMS16-BH015 2018025 species 1 0 Kitasatospora albolonga 2940 68173 species 1 2066 2058 Kitasatospora setae 0 1 species 1 4 order 22 414714 Catenulisporales 4021 0 3 1 family Catenulisporaceae 3999 0 414877 29 2 1 genus 414878 21 3970 Catenulispora 0 304895 0 3949 Catenulispora acidiphila species 1 order 3 0 989 85014 74 85034 Glycomycetaceae 989 0 1 3 family 14 283810 915 Stackebrandtia 0 2 1 genus 283811 Stackebrandtia nassauensis 901 0 1 species 0 Propionibacteriales 14208 85009 72 order 1 33 family 1 13 92 85015 0 7528 Nocardioidaceae Pimelobacter 1630 0 16 2044 1 2 genus 2045 Pimelobacter simplex 1614 0 1 species 26 116071 0 Micropruina 617 genus 1 2 1 species Micropruina glycogenica 591 0 75385 Aeromicrobium 895 0 10 2040 2 1 genus species 1 0 885 Aeromicrobium erythreum 2041 genus 1 2 0 Kribbella 1359 61 182639 species 1 0 1298 Kribbella flavida 182640 2935 Nocardioides 0 64 1839 4 1 genus 1 species Nocardioides dokdonensis 1179 0 450734 1027 0 2615069 1 no rank species 1 196162 0 1027 Nocardioides sp. JS614 2045452 0 665 Nocardioides sp. 78 species 1 6608 Propionibacteriaceae 0 92 31957 19 1 family 0 Acidipropionibacterium 764 1912215 6 genus 2 1 0 758 Acidipropionibacterium acidipropionici 1748 species 1 genus 1 2801844 0 475 1750 475 Pseudopropionibacterium propionicum 0 1 species genus 1 2 0 743 Microlunatus 3 29404 species 1 29405 0 Microlunatus phosphovorus 740 1 genus 203133 252 0 2633994 252 0 1 no rank species 1 1871034 0 Propionimicrobium sp. Marseille-P3275 252 genus 3 1 0 Propionibacterium 986 11 1743 no rank 1 2608905 0 193 193 Propionibacterium sp. oral taxon 193 0 671223 1 species 1744 0 Propionibacterium freudenreichii 782 species 1 genus 4 1 0 Cutibacterium 983 1912216 27 species 1 33010 0 Cutibacterium avidum 387 1 species 347 Cutibacterium acnes 0 1747 species 1 0 Cutibacterium granulosum 222 33011 Tessaracoccus 2313 0 12 72763 5 1 genus 2635419 0 616 no rank 1 1909732 Tessaracoccus sp. T2.5-30 616 0 1 species 1332264 0 Tessaracoccus aquimaris 640 species 1 species 1 0 457 Tessaracoccus flavus 1610493 Tessaracoccus flavescens 588 0 399497 1 species 1383 0 52018 1 no rank species 1 1650658 0 1383 Actinobacteria bacterium IMCC26256 order 162 1 0 93293 Corynebacteriales 441 85007 1 52 family Corynebacteriaceae 18326 0 1653 69 51 1 genus Corynebacterium 18257 0 251 1716 species 1 349751 0 Corynebacterium marinum 479 Corynebacterium argentoratense 211 0 42817 1 species 92706 0 [Brevibacterium] flavum 290 species 1 1717 Corynebacterium diphtheriae 437 0 1 species 0 Corynebacterium efficiens 240 152794 species 1 Corynebacterium crudilactis 463 0 1652495 1 species 35757 0 Corynebacterium cystitidis 334 species 1 species 1 0 Corynebacterium kroppenstedtii 191 161879 1 species Corynebacterium sphenisci 490 0 191493 2624378 0 465 no rank 2 species 1 1487956 0 Corynebacterium sp. ATCC 6931 198 1 species 702967 267 Corynebacterium sp. NML98-0116 0 160386 213 Corynebacterium casei 0 1 species 0 311 Corynebacterium glaucum 187491 species 1 species 1 0 Corynebacterium frankenforstense 641 1230998 1 species 258 Corynebacterium resistens 0 258224 1 species 38305 498 Corynebacterium vitaeruminis 0 species 1 0 Corynebacterium flavescens 204 28028 1 species 274 Corynebacterium testudinoris 0 136857 species 1 0 Corynebacterium humireducens 539 1223514 1705 235 Corynebacterium stationis 0 1 species 0 Corynebacterium kutscheri 516 35755 species 1 1718 0 Corynebacterium glutamicum 839 species 1 Corynebacterium phocae 209 0 161895 1 species 1 species 161896 Corynebacterium camporealensis 187 0 species 1 161899 0 284 Corynebacterium singulare species 1 65058 0 319 Corynebacterium ulcerans 1719 Corynebacterium pseudotuberculosis 306 0 1 species 209 Corynebacterium epidermidicanis 0 1050174 1 species 1 species 89154 Corynebacterium terpenotabidum 353 0 43771 381 Corynebacterium urealyticum 0 1 species 571915 326 Corynebacterium mustelae 0 1 species 156978 Corynebacterium imitans 258 0 1 species 38289 361 Corynebacterium jeikeium 0 1 species 0 Corynebacterium callunae 271 1721 species 1 species 1 1404244 0 Corynebacterium glyciniphilum 303 species 1 0 257 Corynebacterium aurimucosum 169292 108486 0 335 Corynebacterium falsenii species 1 203263 296 Corynebacterium aquilae 0 1 species species 1 0 259 Corynebacterium atypicum 191610 species 1 575200 0 Corynebacterium maris 456 0 468 Corynebacterium halotolerans 225326 species 1 1727 460 Corynebacterium variabile 0 1 species species 1 1121358 0 368 Corynebacterium doosanense species 1 0 1484 Corynebacterium uterequi 1072256 1 species 43770 Corynebacterium striatum 499 0 0 Corynebacterium ureicelerivorans 295 401472 species 1 1231000 0 Corynebacterium lactis 198 species 1 146827 0 Corynebacterium simulans 270 species 1 1408191 0 Corynebacterium deserti 291 species 1 1 species Corynebacterium ammoniagenes 175 0 1697 1 31 family 26528 Nocardiaceae 0 119 85025 1 23 genus 18095 Rhodococcus 0 547 1827 132919 Rhodococcus jostii 1072 0 1 species species 1 0 2955 Rhodococcus opacus 37919 12 no rank 7169 0 192944 1 species Rhodococcus sp. YL-1 444 0 1045808 species 1 0 389 Rhodococcus sp. WMMA185 679318 1 species Rhodococcus sp. WB1 1176 0 1033922 1727214 Rhodococcus sp. H-CA8f 469 0 1 species 775 Rhodococcus sp. MTM3W5.2 0 1805827 1 species species 1 0 Rhodococcus sp. 008 435 1723645 1 species Rhodococcus sp. PBTS 1 664 0 1653478 935199 0 Rhodococcus sp. p52 757 species 1 1 species Rhodococcus sp. B7740 550 0 1564114 1 species 627 Rhodococcus sp. 2G 0 1570939 1 species Rhodococcus sp. PBTS 2 501 0 1653479 1807790 0 382 Rhodococcus sp. BH4 species 1 1 species 1833 Rhodococcus erythropolis 824 0 1 species 1083 Rhodococcus ruber 0 1830 1829 727 Rhodococcus rhodochrous 0 1 species 191292 1012 Rhodococcus aetherivorans 0 1 species 103816 946 Rhodococcus pyridinivorans 0 1 species 0 760 Rhodococcus hoagii 43767 species 1 1828 Rhodococcus fascians 553 0 1 species 1 species 447 Rhodococcus qingshengii 0 334542 0 Nocardia 8314 115 1817 genus 1 7 135487 0 1557 Nocardia cyriacigeorgica species 1 species 1 0 986 Nocardia nova 37330 Nocardia seriolae 1042 0 37332 1 species species 1 0 Nocardia farcinica 1381 37329 455432 Nocardia terpenica 1103 0 1 species 37326 2130 Nocardia brasiliensis 0 1 species 21 85026 Gordoniaceae 5042 0 1 9 family 8 1 genus 2053 92 Gordonia 5021 0 84595 766 Gordonia polyisoprenivorans 0 1 species 0 718 Gordonia terrae 2055 species 1 species 1 0 673 Gordonia iterans 1004901 1310 0 2657482 2 no rank 0 712 Gordonia sp. KTR9 337191 species 1 species 1 0 Gordonia sp. YC-JH1 598 2059875 1 species 1136941 Gordonia phthalatica 758 0 704 Gordonia bronchialis 0 2054 1 species 3 family 85028 2001 0 genus 3 1 2060 23 0 2001 Tsukamurella 1 species 2061 827 Tsukamurella paurometabola 0 species 1 0 Tsukamurella tyrosinosolvens 1151 57704 85029 9 1171 Dietziaceae 0 4 1 family 0 1162 Dietzia 10 37914 genus 1 3 1 no rank 730 0 2617939 0 730 Dietzia sp. oral taxon 368 712270 species 1 species 1 499555 0 Dietzia timorensis 422 2 no rank 213 0 697024 1 2 genus 213 Lawsonella 0 1847725 2 species 1 0 211 Lawsonella clevelandensis 1528099 108 1762 Mycobacteriaceae 39183 0 1 57 family genus 2 1 697025 11 0 400 Hoyosella species 1 0 Hoyosella subflava 389 639313 genus 1 34 1268 1763 0 Mycobacterium 22689 1512 0 77643 4 species group 78331 0 326 Mycobacterium canettii species 1 species 1 3 443 1773 0 Mycobacterium tuberculosis 1186 0 376 Mycobacterium bovis 1765 biotype 1 33894 0 367 Mycobacterium africanum biotype 1 1781 Mycobacterium marinum 1145 0 1 species 0 902 Mycobacterium dioxanotrophicus 482462 species 1 8 species group 6708 0 120793 0 3699 Mycobacterium avium 1764 species 1 701042 0 Mycobacterium marseillense 479 species 1 species 1 339268 0 702 Mycobacterium colombiense 1 species 1138383 214 Mycobacterium paraintracellulare 0 species 4 1 1767 354 0 Mycobacterium intracellulare 1614 0 Mycobacterium indicus pranii 242 35617 subspecies 1 0 Mycobacterium chimaera 674 222805 subspecies 1 1203599 0 344 Mycobacterium yongonense subspecies 1 0 Mycobacterium liflandii 623 261524 species 1 2642494 8179 0 13 no rank 164757 761 Mycobacterium sp. JLS 0 1 species 1 species 1273687 Mycobacterium sp. VKM Ac-1817D 603 0 species 1 164756 0 Mycobacterium sp. MCS 710 species 1 0 Mycobacterium sp. WY10 642 1920667 species 1 0 Mycobacterium sp. QIA-37 348 1561223 2051552 Mycobacterium sp. PYR15 648 0 1 species Mycobacterium sp. JS623 772 0 212767 1 species 1 species Mycobacterium sp. YC-RL4 708 0 1682113 species 1 1570328 0 Mycobacterium sp. NRRL B-3805 602 1168287 Mycobacterium sp. MOTT36Y 223 0 1 species 1 species 623 Mycobacterium sp. EPa45 0 1545728 species 1 0 Mycobacterium sp. KMS 733 189918 species 1 1879023 0 Mycobacterium sp. djl-10 806 species group 1 0 600 2249310 0 600 Mycobacterium shigaense 722731 species 1 1768 Mycobacterium kansasii 634 0 1 species 1 species 29311 334 Mycobacterium haemophilum 0 1 species 1809 Mycobacterium ulcerans 598 0 0 Mycobacterium leprae 186 1769 species 1 0 1302 1073531 genus 2 species 1 875328 0 714 Mycobacterium sinense 1 species Mycobacterium terrae 588 0 1788 670516 3754 0 5 genus species 1 1774 0 Mycobacterium chelonae 425 Mycobacterium immunogenum 492 0 83262 1 species 1578165 0 394 Mycobacterium saopaulense species 1 1520670 0 350 Mycobacterium stephanolepidis species 1 species 1 36809 0 2093 Mycobacterium abscessus genus 13 1866885 0 10930 species 1 0 684 Mycobacterium thermoresistibile 1797 1804 Mycobacterium gilvum 1144 0 1 species species 1 0 980 Mycobacterium chubuense 1800 species 1 0 874 Mycobacterium vanbaalenii 110539 1 species 735 Mycobacterium litorale 0 758802 1 species Mycobacterium vaccae 863 0 1810 1795 Mycobacterium neoaurum 602 0 1 species species 1 1772 0 960 Mycobacterium smegmatis 0 928 Mycobacterium aurum 1791 species 1 Mycobacterium goodii 916 0 134601 1 species 1 species 36814 755 Mycobacterium rhodesiae 0 1771 Mycobacterium phlei 912 0 1 species 577 Mycobacterium fortuitum 0 1766 1 species 3 1 family Segniliparaceae 388 0 2 316606 genus 1 2 286801 1 0 Segniliparus 386 Segniliparus rotundus 385 0 286802 1 species 3 order 898 0 1643684 1 3 family Nakamurellaceae 898 0 85031 5 genus 2 1 12 53460 0 Nakamurella 893 53461 0 Nakamurella multipartita 881 species 1 0 9002 Streptosporangiales 96 85012 order 1 16 1 7 family Nocardiopsaceae 3617 0 34 83676 genus 2 1 2 83677 0 Thermobifida 463 species 1 2021 0 461 Thermobifida fusca genus 4 1 0 3120 Nocardiopsis 2013 38 280236 980 Nocardiopsis gilva 0 1 species 1 species 2014 1352 Nocardiopsis dassonvillei 0 Nocardiopsis alba 750 0 53437 1 species 4311 Streptosporangiaceae 0 2004 39 1 5 family Nonomuraea 2427 0 16 83681 1 2 genus no rank 1 2593643 0 2411 Nonomuraea sp. ATCC 55076 2411 0 1909395 1 species 11 2000 1845 Streptosporangium 0 1 2 genus 2001 1834 Streptosporangium roseum 0 1 species 0 978 Thermomonosporaceae 3 2012 family 3 1 genus 1 2 0 Thermomonospora 975 12 2019 1 species 2020 Thermomonospora curvata 963 0 2 no rank 1643818 798 0 genus 1 2 0 798 Thermobispora 16 147067 2006 0 Thermobispora bispora 782 species 1 1 20 order Micromonosporales 16130 0 34 85008 0 16096 Micromonosporaceae 300 28056 family 19 1 1 6 genus 100 1865 7198 Actinoplanes 0 1866 0 Actinoplanes missouriensis 1450 species 1 2626549 0 4208 no rank 3 0 1474 Actinoplanes sp. SE50 2033844 species 1 1 species 649831 Actinoplanes sp. N902-109 1260 0 0 1474 Actinoplanes sp. SE50/110 134676 species 1 196914 Actinoplanes friuliensis 1440 0 1 species 1 4 genus 48 1873 3578 Micromonospora 0 1225 0 2617518 1 no rank 0 Micromonospora sp. L5 1225 648999 species 1 47850 Micromonospora aurantiaca 1293 0 1 species 1003110 0 1012 Verrucosispora maris species 1 1366 Salinispora 0 30 168694 1 3 genus 0 687 Salinispora arenicola 168697 species 1 1 species Salinispora tropica 649 0 168695 0 Verrucosispora 8 84593 genus 1 35 673534 0 Plantactinospora 3646 genus 1 4 2631981 0 3611 no rank 3 species 1 0 1178 Plantactinospora sp. BC1 2108470 1 species Plantactinospora sp. BB1 1279 0 2071627 2024580 0 Plantactinospora sp. KBS50 1154 species 1 4 no rank 3183 0 1752188 1 species 1848255 Actinobacteria bacterium IMCC25003 506 0 573 Actinobacteria bacterium IMCC26077 0 1848755 1 species 1 species 1202 Actinobacteria bacterium IMCC19121 0 1848754 species 1 0 902 Actinobacteria bacterium IMCC26103 1848756 class 1 32 0 Coriobacteriia 7964 84998 45 14 1 order 49 84999 Coriobacteriales 2889 0 0 Coriobacteriaceae 803 5 84107 family 6 1 0 327 84113 no rank 1 Coriobacteriaceae bacterium 68-1-3 327 0 1531429 1 species 102106 7 0 Collinsella 255 genus 2 1 1 species 248 Collinsella aerofaciens 0 74426 genus 1 2 11 33870 0 Coriobacterium 216 1 species Coriobacterium glomerans 205 0 33871 1643824 7 0 2037 Atopobiaceae family 7 1 0 1435 Olsenella 23 133925 genus 1 4 species 1 133926 0 396 Olsenella uli Olsenella sp. Marseille-P2300 513 0 1805478 1 species 2638792 503 0 1 no rank 712411 503 Olsenella sp. oral taxon 807 0 1 species 0 4 Atopobium 1380 genus 1 2767353 0 591 genus 1 1382 0 591 Atopobium parvulum species 1 1 17 order 1643822 45 5030 Eggerthellales 0 4985 Eggerthellaceae 0 1643826 101 16 1 family genus 2 1 5 84108 0 Slackia 316 311 Slackia heliotrinireducens 0 84110 1 species 1348 Gordonibacter 0 644652 60 3 1 genus 0 Gordonibacter massiliensis 692 1841863 species 1 1 species 1335613 Gordonibacter urolithinfaciens 596 0 2 79603 0 281 Denitrobacterium genus 1 2 79604 0 Denitrobacterium detoxificans 279 species 1 9 84111 Eggerthella 1048 0 1 3 genus 1 no rank 2648737 334 0 1 species 334 Eggerthella sp. YY7918 0 502558 1 species Eggerthella lenta 705 0 84112 0 432 Adlercreutzia 5 447020 genus 2 1 1 species 446660 427 Adlercreutzia equolifaciens 0 genus 2 1 0 Phoenicibacter 1093 1981050 7 1944646 Phoenicibacter massiliensis 1086 0 1 species 0 366 84162 genus 1 84163 366 Cryptobacterium curtum 0 1 species 1497346 7 3235 Thermoleophilia 0 5 1 class 4 1 order 3228 Solirubrobacterales 0 53 588673 family 3 1 0 Conexibacteraceae 3175 23 320583 3152 Conexibacter 0 12 191494 2 1 genus 1 species 191495 Conexibacter woesei 3140 0 6 1 class 84995 1 1105 Rubrobacteria 0 84996 27 0 1104 Rubrobacterales order 5 1 4 1 family 84997 15 Rubrobacteraceae 1077 0 13 42255 Rubrobacter 1062 0 3 1 genus 49319 0 Rubrobacter xylanophilus 572 species 1 1 species 477 Rubrobacter radiotolerans 0 42256 1297 12623 0 36 phylum 188787 58 12623 Deinococci 0 1 36 class 17 1 order 5286 Thermales 0 26 68933 73 188786 0 5260 Thermaceae family 1 16 1 3 genus 65551 11 1218 Meiothermus 0 807 Meiothermus ruber 0 277 1 species 52022 Meiothermus silvanus 400 0 1 species 7 208447 0 665 Oceanithermus genus 1 2 658 Oceanithermus profundus 0 187137 1 species 186191 8 0 357 Marinithermus genus 2 1 0 Marinithermus hydrothermalis 349 186192 species 1 0 2947 Thermus 42 270 genus 1 8 0 303 2619321 no rank 1 species 1 1111069 0 Thermus sp. CCB_US3_UF1 303 species 1 37636 0 Thermus scotoductus 241 56957 0 Thermus oshimai 454 species 1 species 1 56956 0 265 Thermus brockianus 1 species 274 Thermus thermophilus 1005 0 271 337 Thermus aquaticus 0 1 species 456163 0 Thermus parvatiensis 300 species 1 3 order 2762275 791 0 family 3 1 4 332247 0 791 Trueperaceae 0 787 Truepera 21 332248 genus 1 2 Truepera radiovictrix 766 0 332249 1 species order 1 15 118964 96 0 Deinococcales 6488 183710 25 Deinococcaceae 6392 0 1 14 family 0 Deinococcus 6367 121 1298 genus 1 13 1 species Deinococcus maricopensis 610 0 309887 species 1 502394 0 Deinococcus gobiensis 645 1299 478 Deinococcus radiodurans 0 1 species 546 0 2623546 1 no rank 1 species Deinococcus sp. NW-56 546 0 2080419 Deinococcus puniceus 358 0 1182568 1 species 1 species 432329 501 Deinococcus peraridilitoris 0 0 Deinococcus actinosclerus 471 1768108 species 1 55148 0 Deinococcus proteolyticus 816 species 1 species 1 68909 0 Deinococcus geothermalis 432 0 Deinococcus soli Cha et al. 2016 535 1309411 species 1 1 species 310783 363 Deinococcus deserti 0 1 species 1182571 491 Deinococcus swuensis 0 1239 303 0 904526 Firmicutes phylum 1 715 class 1 430 91061 446 0 Bacilli 515768 order 264 1 0 352419 Bacillales 786 1385 3 family 308 0 186824 genus 1 2 1677050 3 0 305 Novibacillus 1471761 Novibacillus thermophilus 302 0 1 species 292635 Laceyella 3 0 1 genus 186820 28 13235 Listeriaceae 0 1 9 family 2 1 genus Brochothrix 1617 0 16 2755 1 species Brochothrix thermosphacta 1601 0 2756 1 6 genus 149 1637 11590 Listeria 0 3991 Listeria monocytogenes 0 1639 1 species 1643 Listeria welshimeri 1728 0 1 species 1 species 1642 Listeria innocua 1691 0 1640 Listeria seeligeri 1433 0 1 species 1638 2598 Listeria ivanovii 0 1 species 90964 132 0 81119 Staphylococcaceae family 1 42 Salinicoccus 510 0 2 45669 1 2 genus species 1 0 508 Salinicoccus halodurans 407035 33 1 genus 674 1279 74907 Staphylococcus 0 0 Staphylococcus xylosus 3728 1288 species 1 0 2309 Staphylococcus hominis 1290 species 1 Staphylococcus piscifermentans 1162 0 70258 1 species 1 species 1295 Staphylococcus schleiferi 1516 0 species 1 155085 0 1302 Staphylococcus lutrae 2165 0 91994 1 no rank 1 species Staphylococcus sp. AntiMn-1 2165 0 1715860 29384 Staphylococcus kloosii 1882 0 1 species 2001 Staphylococcus lugdunensis 0 28035 1 species Staphylococcus capitis 2303 0 29388 1 species 170573 0 Staphylococcus pettenkoferi 815 species 1 Staphylococcus warneri 2211 0 1292 1 species 901 Staphylococcus muscae 0 1294 1 species species 1 985762 0 1469 Staphylococcus agnetis species 1 1283 0 2742 Staphylococcus haemolyticus species 1 0 Staphylococcus stepanovicii 2695 643214 species 1 0 Staphylococcus simulans 1331 1286 1 species 1284 1228 Staphylococcus hyicus 0 species 1 0 Staphylococcus aureus 7193 1280 species 1 0 2905 Staphylococcus sciuri 1296 2221 Staphylococcus argenteus 0 985002 1 species 1 species 308354 2554 Staphylococcus simiae 0 1281 0 1794 Staphylococcus carnosus species 1 1 species Staphylococcus pasteuri 5281 0 45972 29382 2198 Staphylococcus cohnii 0 1 species 1 species Staphylococcus equorum 3210 0 246432 species 1 1282 0 4147 Staphylococcus epidermidis Staphylococcus pseudintermedius 1247 0 283734 1 species 214473 0 2046 Staphylococcus nepalensis species 1 1 species 70255 1881 Staphylococcus condimenti 0 61015 0 2074 Staphylococcus succinus species 1 29385 2151 Staphylococcus saprophyticus 0 1 species species 1 0 Staphylococcus felis 1571 46127 0 3924 Macrococcus 22 69965 genus 4 1 1 species 902 Macrococcus canis 0 1855823 1 no rank 1691 0 2619255 species 1 1898474 0 Macrococcus sp. IME1552 1691 69966 Macrococcus caseolyticus 1309 0 1 species 0 1646 Auricoccucs 2005363 3 genus 2 1 species 1 1849491 0 Auricoccus indicus 1643 1 117 family 344 186817 Bacillaceae 185729 0 2482 1386 0 Bacillus 114368 genus 1 58 1 species 2829 Bacillus endophyticus 0 135735 1 species 79883 Bacillus horikoshii 1248 0 1398 1332 Bacillus coagulans 0 1 species species 1 632773 0 Bacillus beveridgei 550 1664069 0 808 Bacillus glycinifermentans species 1 no rank 19 0 11404 185979 1 species 1409 193 Bacillus sp. (in: Bacteria) 0 species 1 0 Bacillus sp. 1s-1 424 2026248 species 1 1837130 0 Bacillus sp. FJAT-14266 594 1827146 0 1691 Bacillus sp. IHB B 7164 species 1 Bacillus sp. Lzh-5 121 0 2049935 1 species 1 species 219 Bacillus sp. LM 4-2 0 1628753 98228 0 534 Bacillus sp. OxB-1 species 1 1570330 Bacillus sp. BH072 102 0 1 species species 1 2009331 0 Bacillus sp. MD-5 325 Bacillus sp. SDLI1 393 0 1774743 1 species 1 species 214 Bacillus sp. Pc3 0 1446792 1856406 Bacillus sp. H15-1 426 0 1 species 1 species Bacillus sp. X1(2014) 1707 0 1565991 species 1 0 317 Bacillus sp. JS 1127744 0 Bacillus sp. SJ-10 214 563169 species 1 species 1 1574141 0 Bacillus sp. YP1 203 1 species 1941347 Bacillus sp. 275 194 0 Bacillus sp. WP8 982 0 756828 1 species 666686 Bacillus sp. 1NLA3E 2551 0 1 species species 1 0 2051 Bacillus safensis 561879 0 Bacillus megaterium 5532 1404 species 1 1 species Bacillus weihaiensis 2507 0 1547283 species 1 1178537 0 963 Bacillus xiamenensis 0 722 Bacillus infantis 324767 species 1 241 Bacillus gibsonii 0 79881 1 species species 1 0 1630 Bacillus methanolicus 1471 9 species group 653685 11773 0 Bacillus sonorensis 695 0 119858 1 species 1 species 1260 Bacillus atrophaeus 0 1452 1 species Bacillus paralicheniformis 682 0 1648923 72361 Bacillus vallismortis 153 0 1 species 3 species subgroup 3539 0 1938374 1 species Bacillus velezensis 1717 0 492670 species 1 0 Bacillus amyloliquefaciens 1454 1390 659243 Bacillus siamensis 368 0 1 species species 1 0 939 Bacillus licheniformis 1402 species 1 1423 0 4505 Bacillus subtilis 0 1926 Bacillus aryabhattai 412384 species 1 species 1 0 2165 Bacillus flexus 86664 10 species group 52794 0 86661 1 species 155322 Bacillus toyonensis 1529 0 0 Bacillus bombysepticus 1779 658666 species 1 1428 Bacillus thuringiensis 16512 0 1 species 580165 1790 Bacillus cytotoxicus 0 1 species no rank 3 2750818 0 4801 1463 Bacillus sp. HBCD-sjtu 0 2053832 1 species 0 Bacillus sp. FDAARGOS_235 1990 1839798 species 1 1 species 1892404 Bacillus sp. ABP14 1348 0 species 1 0 6476 Bacillus mycoides 1405 0 18138 Bacillus cereus 1396 species 1 0 1769 Bacillus anthracis 1392 species 1 species group 1 0 1085 1792192 0 Bacillus altitudinis 1085 293387 species 1 1413 0 Bacillus cellulosilyticus 2168 species 1 1 species 1479 1072 Bacillus smithii 0 species 1 0 Bacillus pumilus 4327 1408 1 species Bacillus cohnii 2759 0 33932 0 Amphibacillus 1784 7 29331 genus 1 2 species 1 1449 0 Amphibacillus xylanus 1777 genus 5 1 0 Lysinibacillus 11836 71 400634 species 1 0 2039 Lysinibacillus varians 1145276 species 1 0 1931 Lysinibacillus fusiformis 28031 2636778 0 2284 no rank 1 Lysinibacillus sp. YS11 2284 0 2072025 1 species 0 Lysinibacillus sphaericus 5511 1421 species 1 genus 1 7 0 Virgibacillus 12409 84406 59 2204 Virgibacillus necropolis 0 163877 1 species 1 species 2017483 1890 Virgibacillus phasianinus 0 2620237 0 4133 no rank 2 1 species 2282 Virgibacillus sp. 6R 0 1911587 403957 0 Virgibacillus sp. SK37 1851 species 1 1482 1779 Virgibacillus halodenitrificans 0 1 species 0 2344 Virgibacillus pantothenticus 1473 species 1 genus 1 2 7 182709 0 Oceanobacillus 4441 Oceanobacillus iheyensis 4434 0 182710 1 species 5 genus 8509 0 2675234 1719 Bacillus pseudofirmus 0 79885 1 species 1 species 86665 Bacillus halodurans 843 0 species 1 79880 0 Bacillus clausii 1800 2059 Bacillus lehensis 0 300825 1 species Bacillus krulwichiae 2088 0 199441 1 species 1 6 genus 150247 108 6825 Anoxybacillus 0 2 no rank 2639704 2316 0 species 1 0 Anoxybacillus sp. B2M1 1226 1490052 1090 Anoxybacillus sp. B7M1 0 1490057 1 species 1 species 198467 1130 Anoxybacillus gonensis 0 species 1 33934 0 Anoxybacillus flavithermus 2196 species 1 0 1075 Anoxybacillus amylolyticus 294699 1329200 2 0 Fictibacillus 2560 genus 1 3 1 species 1288 Fictibacillus arsenicus 0 255247 1270 Fictibacillus phosphorivorans 0 1221500 1 species 1 genus 887 0 175304 1 species Lentibacillus amyloliquefaciens 887 0 1472767 0 Halobacillus 2173 45667 17 genus 1 3 0 Halobacillus mangrovi 1211 402384 species 1 1570 Halobacillus halophilus 945 0 1 species 2675229 3749 0 2 genus species 1 0 Bacillus muralis 945 264697 1 species 2804 Bacillus simplex 0 1478 1 genus 1906945 1304 0 1304 Parageobacillus thermoglucosidasius 0 1426 1 species 1 15 genus 129337 349 7431 Geobacillus 0 1505648 0 2002 species group 4 species 1 0 Geobacillus kaustophilus 272 1462 species 1 33938 0 380 Geobacillus thermocatenulatus 0 Geobacillus thermoleovorans 978 33941 species 1 0 372 Geobacillus lituanicus 169283 species 1 1 species 401 Geobacillus genomosp. 3 0 1921421 33940 Geobacillus thermodenitrificans 643 0 1 species 1 species 1422 546 Geobacillus stearothermophilus 0 3108 0 2642459 6 no rank 471223 0 Geobacillus sp. WCH70 1178 species 1 1 species 1233873 Geobacillus sp. GHH01 216 0 species 1 0 Geobacillus sp. C56-T3 392 691437 550542 0 Geobacillus sp. Y412MC52 185 species 1 species 1 544556 0 Geobacillus sp. Y412MC61 215 0 922 Geobacillus sp. Y4.1MC1 581103 species 1 129338 382 Geobacillus subterraneus 0 1 species 1 2 genus 823 Terribacillus 0 459532 2 Terribacillus aidingensis 821 0 586416 1 species genus 2 0 4342 2675230 1 species Bacillus oceanisediminis 1377 0 665099 0 Bacillus kochii 2965 859143 species 1 469 0 351195 1 genus species 1 1230341 0 469 Salimicrobium jeotgali 1475 0 1055323 1 genus 33936 Aeribacillus pallidus 1475 0 1 species 186822 81 0 Paenibacillaceae 37278 family 46 1 2 1 genus 3 76632 Thermobacillus 585 0 377615 582 Thermobacillus composti 0 1 species 4438 Brevibacillus 0 15 55080 1 4 genus species 1 0 692 Brevibacillus formosus 54913 1 species 1465 2570 Brevibacillus laterosporus 0 1 species 1393 1161 Brevibacillus brevis 0 genus 1 36 266 44249 0 Paenibacillus 30638 species 1 0 Paenibacillus beijingensis 601 1126833 172713 0 Paenibacillus kribbensis 735 species 1 0 Paenibacillus swuensis 626 1178515 species 1 160799 0 Paenibacillus borealis 626 species 1 1 species 379 Paenibacillus stellifer 0 169760 species 1 44251 0 888 Paenibacillus durus 0 Paenibacillus terrae 657 159743 species 1 species 1 0 837 Paenibacillus peoriae 59893 1 species 472 Paenibacillus ihbetae 0 1870820 1 species 850 Paenibacillus xylanexedens 0 528191 1 species 189425 786 Paenibacillus graminis 0 species 1 1616788 0 852 Paenibacillus bovis species 1 0 3785 Paenibacillus polymyxa 1406 189426 Paenibacillus odorifer 1121 0 1 species 1 species 502 Paenibacillus yonginensis 0 1462996 0 Paenibacillus crassostreae 1446 1763538 species 1 no rank 13 0 10225 185978 324057 Paenibacillus sp. JDR-2 571 0 1 species 710 Paenibacillus sp. BIHB4019 0 1870819 1 species 0 845 Paenibacillus sp. FSL P4-0081 1536769 species 1 0 680 Paenibacillus sp. FSL H7-0357 1536774 species 1 1 species 1536770 Paenibacillus sp. FSL R5-0345 1276 0 species 1 0 455 Paenibacillus sp. Y412MC10 481743 1536772 0 528 Paenibacillus sp. FSL R7-0273 species 1 1566358 0 Paenibacillus sp. IHBB 10380 1726 species 1 2069255 772 Paenibacillus sp. lzh-N1 0 1 species 1536771 Paenibacillus sp. FSL R5-0912 493 0 1 species 1 species 1695218 436 Paenibacillus sp. 32O-W 0 1 species 1536773 605 Paenibacillus sp. FSL R7-0331 0 1 species 1128 Paenibacillus sp. FSL H7-0737 0 1536775 1 species group 2044880 587 0 1 species 587 Paenibacillus riograndensis 0 483937 414771 Paenibacillus donghaensis 1315 0 1 species species 1 1464 0 1170 Paenibacillus larvae 1 species 1015 Paenibacillus mucilaginosus 0 61624 0 340 Paenibacillus sabinae 365617 species 1 species 1 162209 0 Paenibacillus naphthalenovorans 557 0 1536 85151 no rank 3 6 55079 0 Aneurinibacillus 1536 genus 1 3 1 species Aneurinibacillus soli 711 0 1500254 1 no rank 819 0 2642329 species 1 0 Aneurinibacillus sp. XH2 819 1450761 4010 0 539002 9 no rank no rank 2 539738 0 1603 7 1378 Gemella 1603 0 1 2 genus 0 1596 2624949 no rank 1 0 Gemella sp. oral taxon 928 1596 1785995 species 1 7 no rank 2407 0 539742 1 7 genus 56 33986 2407 Exiguobacterium 0 2644629 0 1565 no rank 4 1399115 Exiguobacterium sp. MH3 338 0 1 species species 1 360911 0 Exiguobacterium sp. AT1b 335 species 1 0 Exiguobacterium sp. ZWU0009 456 1224749 species 1 1849031 0 Exiguobacterium sp. U13-1 436 0 419 Exiguobacterium sibiricum 332410 species 1 1 species 132920 367 Exiguobacterium antarcticum 0 27 1 family 75 186818 Planococcaceae 26730 0 0 1051 Jeotgalibacillus 10 157226 genus 1 2 1041 Jeotgalibacillus malaysiensis 0 1508404 1 species 12663 Planococcus 0 1372 93 12 1 genus 1038856 0 Planococcus plakortidis 328 species 1 1 species 1529 Planococcus donghaensis 0 414778 Planococcus kocurii 1494 0 1374 1 species 1 species 973 Planococcus antarcticus 0 161360 1 species 192421 Planococcus maritimus 1039 0 0 Planococcus sp. L10.15 1783 1302659 species 1 1 species 200991 416 Planococcus rifietoensis 0 1 species 1598147 Planococcus faecalis 1512 0 species 1 1215089 0 1363 Planococcus halocryophilus 2662419 2133 0 2 no rank Planococcus sp. PAMC 21323 1543 0 1526927 1 species 1 species 2058136 Planococcus sp. MB-3u-03 590 0 15 1649 1712 Kurthia 0 2 1 genus 0 1697 2644826 no rank 1 1 species 1750719 Kurthia sp. 11kri321 1697 0 0 Rummeliibacillus 1611 9 648802 genus 1 2 Rummeliibacillus stabekisii 1602 0 241244 1 species 0 Solibacillus 3679 648800 40 genus 3 1 76853 0 Solibacillus silvestris 1689 species 1 1 no rank 1950 0 2637870 2048654 Solibacillus sp. R5-41 1950 0 1 species genus 5 1 0 5939 Sporosarcina 1569 49 no rank 2 2647733 0 1345 1930764 0 684 Sporosarcina sp. P33 species 1 species 1 0 661 Sporosarcina sp. P37 1930546 species 1 0 Sporosarcina psychrophila 1426 1476 1571 0 3119 Sporosarcina ureae species 1 1 family 186821 501 0 501 0 663587 1 no rank species 1 0 501 [Bacillus] selenitireducens 85683 15 186823 2723 Alicyclobacillaceae 0 9 1 family 2 1 genus 534 Alicyclobacillus 0 3 29330 405212 0 531 Alicyclobacillus acidocaldarius species 1 3 1 genus 1241 Kyrpidia 0 6 1129704 2055160 0 640 Kyrpidia sp. EA-1 species 1 species 1 0 Kyrpidia tusciae 595 33943 1 432330 933 Tumebacillus 0 1 3 genus 0 343 Tumebacillus algifaecis 1214604 species 1 1903704 Tumebacillus avium 589 0 1 species 0 Lactobacillales 162903 186826 467 order 165 1 11 1 family Carnobacteriaceae 11722 0 38 186828 20 1470540 Jeotgalibaca 2465 0 3 1 genus no rank 1 2621505 0 1304 1903686 0 1304 Jeotgalibaca sp. PTS2502 species 1 0 1141 Jeotgalibaca dankookensis 708126 species 1 1 2 genus Marinilactibacillus 1756 0 6 191769 no rank 1 2632303 0 1750 1 species 1750 Marinilactibacillus sp. 15R 0 1911586 38 2747 0 7463 Carnobacterium genus 1 5 257487 2885 0 2 no rank 208596 0 1733 Carnobacterium sp. 17-4 species 1 species 1 0 Carnobacterium sp. CP1 1152 1564681 0 2751 Carnobacterium maltaromaticum 2751 species 1 1 species 147709 1789 Carnobacterium inhibens 0 family 1 8 0 4371 Aerococcaceae 186827 7 37 1375 0 Aerococcus 4364 genus 1 7 51665 Aerococcus urinaeequi 1044 0 1 species 1377 0 771 Aerococcus viridans species 1 species 1 119206 0 Aerococcus sanguinicola 447 Aerococcus urinaehominis 522 0 128944 1 species 1 species 87541 789 Aerococcus christensenii 0 species 1 0 754 Aerococcus urinae 1376 no rank 1 0 1462 263855 1993866 0 Lactobacillales bacterium 1462 species 1 51392 Streptococcaceae 0 74 1300 1 49 family genus 5 1 0 Lactococcus 9227 12 1357 0 Lactococcus garvieae 1518 1363 species 1 Lactococcus piscium 958 0 1364 1 species 1366 0 Lactococcus raffinolactis 655 species 1 1 species 1358 6084 Lactococcus lactis 0 0 42091 Streptococcus 506 1301 genus 1 43 0 3581 2608887 no rank 7 species 1 0 Streptococcus sp. oral taxon 431 385 712633 1 species 530 Streptococcus sp. FDAARGOS_192 0 1839799 species 1 0 405 Streptococcus sp. A12 1759399 0 Streptococcus sp. 'group B' 1192 1319 species 1 1 species 1156431 348 Streptococcus sp. I-G2 0 0 399 Streptococcus sp. NPS 308 1902136 species 1 0 Streptococcus sp. I-P16 322 1156433 species 1 1 species 1265 Streptococcus mitis 0 28037 1303 Streptococcus oralis 1405 0 1 species 2043 0 119603 2 species group 1 species 1234 Streptococcus equi 0 1336 Streptococcus dysgalactiae 809 0 1334 1 species 0 Streptococcus pantholopis 695 1811193 species 1 1314 Streptococcus pyogenes 1757 0 1 species species 1 0 523 Streptococcus pseudopneumoniae 257758 1 species 102684 1307 Streptococcus infantarius 0 species 1 0 Streptococcus suis 2267 1307 1814128 Streptococcus halotolerans 570 0 1 species species 1 1318 0 Streptococcus parasanguinis 598 444 Streptococcus himalayensis 0 1888195 1 species 1313 Streptococcus pneumoniae 1385 0 1 species 82348 646 Streptococcus pluranimalium 0 1 species 0 Streptococcus salivarius 1760 1304 species 1 species 1 59310 0 Streptococcus macedonicus 743 1 species 1335 Streptococcus equinus 455 0 1 species 403 Streptococcus sanguinis 0 1305 1348 1308 Streptococcus parauberis 0 1 species 1 species 400065 655 Streptococcus merionis 0 1 species Streptococcus iniae 1008 0 1346 Streptococcus cristatus 379 0 45634 1 species 1578 Streptococcus gallolyticus 0 315405 1 species 1825069 0 Streptococcus marmotae 635 species 1 species 1 150055 0 Streptococcus lutetiensis 812 species 1 0 Streptococcus mutans 1538 1309 0 Streptococcus gordonii 1792 1302 species 1 544 Streptococcus acidominimus 0 1326 1 species 1 species 1308 Streptococcus thermophilus 1244 0 species 1 1311 0 2425 Streptococcus agalactiae 197614 764 Streptococcus pasteurianus 0 1 species 3 species group 671232 3859 0 76860 Streptococcus constellatus 720 0 1 species 1409 Streptococcus intermedius 0 1338 1 species species 1 1328 0 Streptococcus anginosus 1730 1 species 1349 1197 Streptococcus uberis 0 20 1 family Enterococcaceae 21879 0 26 81852 genus 1 2 0 2361 Melissococcus 4 33969 1 species 2357 Melissococcus plutonius 0 33970 genus 3 1 0 3158 Vagococcus 2737 19 519472 Vagococcus teuberi 1674 0 1 species species 1 633807 0 Vagococcus penaei 1465 genus 1 2 0 Tetragenococcus 1835 3 51668 species 1 51669 0 1832 Tetragenococcus halophilus 188 1350 0 Enterococcus 14499 genus 12 1 3 no rank 2608891 2157 0 2057791 0 715 Enterococcus sp. CR-Ec1 species 1 0 Enterococcus sp. FDAARGOS_375 751 2060307 species 1 0 Enterococcus sp. FDAARGOS_163 691 2060306 species 1 1439 Enterococcus thailandicus 0 417368 1 species 1 species 1214 Enterococcus mundtii 0 53346 Enterococcus hirae 1446 0 1354 1 species 53345 0 1284 Enterococcus durans species 1 species 1 37734 0 793 Enterococcus casseliflavus species 1 0 Enterococcus faecium 2285 1352 species 1 0 2397 Enterococcus faecalis 1351 species 1 2005703 0 Enterococcus wangshanyuanii 1296 family 1 17 81850 33 0 Leuconostocaceae 13176 1 genus 46254 956 0 Oenococcus oeni 956 0 1247 1 species 0 3966 Weissella 46255 31 genus 1 6 species 1 0 Weissella ceti 745 759620 1 species Weissella koreensis 946 0 165096 785 Weissella jogaejeotgali 0 1631871 1 species 1 species 906 Weissella paramesenteroides 0 1249 1 species Weissella cibaria 553 0 137591 9 1 genus 92 1243 Leuconostoc 8221 0 1 species Leuconostoc garlicum 347 0 255248 species 1 1246 0 Leuconostoc lactis 418 771 Leuconostoc citreum 0 33964 1 species 1 species Leuconostoc kimchii 849 0 136609 0 1239 Leuconostoc carnosum 1252 species 1 1244 1909 Leuconostoc gelidum 0 1 species 785 0 2685106 1 no rank 1 species 785 Leuconostoc sp. C2 0 979982 1811 Leuconostoc mesenteroides 0 1245 1 species 58 1 family 33958 150 58434 Lactobacillaceae 0 0 5599 2767887 genus 4 Lactobacillus agilis 545 0 1601 1 species 1 species 89059 744 Lactobacillus acidipiscis 0 species 1 1623 0 429 Lactobacillus ruminis species 1 0 3881 Lactobacillus salivarius 1624 479 0 2767892 1 genus 1 species 240427 Lactobacillus paracollinoides 479 0 1843 0 2767893 3 genus species 1 1138822 0 Lactobacillus curieae 766 152331 Lactobacillus parabuchneri 542 0 1 species 1 species 1581 535 Lactobacillus buchneri 0 3 genus 2767886 1097 0 0 Lactobacillus brevis 705 1580 species 1 Lactobacillus zymae 156 0 267363 1 species 637971 0 Lactobacillus koreensis 236 species 1 403 1578 Lactobacillus 18344 0 1 16 genus 2620435 2945 0 4 no rank species 1 1545702 0 Lactobacillus sp. wkB8 1206 1 species 2099788 Lactobacillus sp. CBA3605 676 0 2099789 0 Lactobacillus sp. CBA3606 599 species 1 464 Lactobacillus sp. D1501 0 2108362 1 species 1 species 2044 Lactobacillus helveticus 0 1587 species 1 1584 0 817 Lactobacillus delbrueckii 1 species 52242 Lactobacillus gallinarum 953 0 83683 0 796 Lactobacillus amylolyticus species 1 species 1 0 1187 Lactobacillus acidophilus 1579 Lactobacillus kefiranofaciens 870 0 267818 1 species species 1 33959 0 Lactobacillus johnsonii 2638 1600 785 Lactobacillus acetotolerans 0 1 species 1 species 1596 Lactobacillus gasseri 2580 0 species 1 0 1190 Lactobacillus amylovorus 1604 1 species 1136 Lactobacillus jensenii 0 109790 2767889 0 1882 genus 2 Lactobacillus backii 1124 0 375175 1 species Lactobacillus coryniformis 758 0 1610 1 species 2767876 448 0 1 genus 1603 0 448 Lactobacillus amylophilus species 1 genus 2 0 2589 2767881 species 1 0 1116 Lactobacillus sanfranciscensis 1625 1473 Lactobacillus lindneri 0 53444 1 species 2767877 0 839 genus 1 0 Lactobacillus kunkeei 839 148814 species 1 3 genus 2767842 3268 0 1590 2171 Lactobacillus plantarum 0 1 species 1589 571 Lactobacillus pentosus 0 1 species 60520 0 526 Lactobacillus paraplantarum species 1 genus 3 2759736 0 2737 1582 0 Lactobacillus casei 1115 species 1 1 species 1597 900 Lactobacillus paracasei 0 species 1 47715 0 722 Lactobacillus rhamnosus 2742598 3396 0 3 genus species 1 0 454 Lactobacillus mucosae 97478 1 species 2484 Lactobacillus reuteri 0 1598 1613 0 458 Lactobacillus fermentum species 1 1253 22 0 4928 Pediococcus genus 6 1 1005 Pediococcus claussenii 0 187452 1 species 51663 0 Pediococcus damnosus 985 species 1 1 species 1497 Pediococcus pentosaceus 0 1255 114090 0 Pediococcus inopinatus 910 species 1 1670797 0 509 species group 1 1 species 1254 509 Pediococcus acidilactici 0 2767885 2055 0 2 genus 1 species 1599 Lactobacillus sakei 1241 0 28038 814 Lactobacillus curvatus 0 1 species genus 6 0 7763 2767879 1612 Lactobacillus farciminis 1206 0 1 species Lactobacillus crustorum 1401 0 392416 1 species 0 1507 Lactobacillus ginsenosidimutans 1007676 species 1 1 species 1074467 934 Lactobacillus heilongjiangensis 0 1 species Lactobacillus allii 1514 0 1847728 species 1 1602 0 Lactobacillus alimentarius 1201 1 genus 2767890 1017 0 species 1 1193095 0 Lactobacillus hokkaidonensis 1017 0 Limnochordia 636 1676648 1 class 5 1 635 Limnochordales 0 1676649 11 4 1 order family 1 3 0 Limnochordaceae 624 1676650 4 2 1 genus 620 Limnochorda 0 46 1676651 species 1 1555112 0 Limnochorda pilosa 574 0 4462 Erysipelotrichia 4 526524 class 10 1 0 4458 Erysipelotrichales 526525 15 order 9 1 128827 31 0 Erysipelotrichaceae 4443 family 8 1 no rank 1 544447 0 611 1834207 0 611 Erysipelotrichaceae bacterium I46 species 1 13 1647 Erysipelothrix 2145 0 3 1 genus 1648 Erysipelothrix rhusiopathiae 1082 0 1 species species 1 1514105 0 1050 Erysipelothrix larvae Turicibacter 1370 0 6 191303 2 1 genus 2638206 0 1364 no rank 1 1712675 0 Turicibacter sp. H121 1364 species 1 genus 1 1729679 0 286 1 species 286 Faecalibaculum rodentium 0 1702221 class 19 1 1737404 84 0 15033 Tissierellia 1737407 0 1399 no rank 2 1 2 genus 1399 Ezakiella 0 7 1582879 1852374 Ezakiella massiliensis 1392 0 1 species 1737405 48 13550 Tissierellales 0 1 16 order 19 2042895 Gottschalkiaceae 3504 0 1 3 family Gottschalkia 3485 0 1505664 8 1 2 genus 0 Gottschalkia acidurici 3477 1556 species 1 0 Peptoniphilaceae 9998 31 1570339 family 12 1 2 1 genus 543311 3 2975 Parvimonas 0 33033 0 2972 Parvimonas micra species 1 1161127 1 0 276 Murdochiella genus 2 1 1 species Murdochiella vaginalis 275 0 1852373 2251 Finegoldia 0 6 150022 1 2 genus 2245 Finegoldia magna 0 1260 1 species 3 1 genus 165779 10 Anaerococcus 2920 0 species 1 0 1406 Anaerococcus mediterraneensis 1870984 Anaerococcus prevotii 1504 0 33034 1 species genus 1 2 0 1545 Peptoniphilus 15 162289 1530 0 2637196 1 no rank 1 species 1912856 1530 Peptoniphilus sp. ING2-D1G 0 no rank 2 33974 0 276 2 1 genus 2 1930845 Ndongobacter 276 0 0 Ndongobacter massiliensis 274 1871025 species 1 2722 0 84086 1 no rank 1 species endosymbiont 'TC1' of Trimyema compressum 2722 0 243899 class 1 218 0 Clostridia 351899 186801 429 2770089 1675 0 4 order 1293 0 2770092 2 family 499228 2 1293 Tepidanaerobacter 0 2 1 genus species 1 0 Tepidanaerobacter acetatoxydans 1291 499229 2 family 382 0 2770093 genus 1 2 0 Thermosediminibacter 382 2 291988 0 380 Thermosediminibacter oceani 291990 species 1 0 Natranaerobiales 1979 12 485256 order 4 1 Natranaerobiaceae 1967 0 7 485255 1 3 family genus 2 1 23 375928 0 1960 Natranaerobius species 1 0 Natranaerobius thermophilus 1937 375929 0 285798 Clostridiales 186802 770 order 1 162 31984 13 441 Heliobacteriaceae 0 1 3 family 2697 3 0 428 Heliobacterium genus 1 2 35701 425 Heliobacterium modesticaldum 0 1 species 2304686 0 10505 family 12 1005 0 2304693 1 genus 0 1005 [Clostridium] thermosuccinogenes 84032 species 1 2304691 706 0 1 genus 1510 0 [Clostridium] stercorarium 706 species 1 2305130 229 0 1 no rank species 1 1834198 0 Ruminiclostridium sp. KB18 229 genus 3 2304692 0 5020 1677857 Herbivorax saccincola 1977 0 1 species species 1 288965 0 [Clostridium] clariflavum 1900 1515 1143 Ruminiclostridium thermocellum 0 1 species 1 1637257 Mageeibacillus 444 0 1 2 genus species 1 884684 0 443 Mageeibacillus indolicus 2 236752 0 Fastidiosipila 1459 genus 2 1 1 species 236753 Fastidiosipila sanguinis 1457 0 1 2 genus 52 1508657 Ruminiclostridium 1642 0 1521 0 [Clostridium] cellulolyticum 1590 species 1 21 68298 0 Syntrophomonadaceae 979 family 1 5 3 862 0 Syntrophomonas 685 genus 1 2 863 0 682 Syntrophomonas wolfei species 1 1 2 genus Syntrophothermus 273 0 129001 1 1 species 86170 Syntrophothermus lipocalidus 272 0 10 no rank 538999 3062 0 2717089 300 0 1 genus species 1 0 Mordavella sp. Marseille-P3756 300 2086584 0 Clostridiales Family XVII. Incertae Sedis 614 8 539000 family 3 1 4 73918 606 Thermaerobacter 0 2 1 genus 1 species Thermaerobacter marianensis 602 0 73919 family 1 4 0 Clostridiales Family XIII. Incertae Sedis 1719 543314 5 1 86331 0 Mogibacterium 780 genus 1 2 114527 Mogibacterium diversum 779 0 1 species 143393 [Eubacterium] sulci 934 0 1 species 1 2 genus 429 Intestinimonas 0 1392389 3 0 426 Intestinimonas butyriciproducens 1297617 species 1 1 13 family Ruminococcaceae 3332 0 541000 39 4 Herbivorax 0 1890281 1 genus genus 1 2 216851 1 0 Faecalibacterium 424 1 species 853 Faecalibacterium prausnitzii 423 0 no rank 1 0 308 2305133 species 1 1572656 0 308 Ruminococcaceae bacterium CPB6 genus 2 1 4 253238 0 432 Ethanoligenens 253239 0 428 Ethanoligenens harbinense species 1 2 1 genus 10 946234 359 Flavonifractor 0 species 1 0 349 Flavonifractor plautii 292800 4 1263 0 1345 Ruminococcus genus 1 3 species 1 0 Ruminococcus bicirculans 684 1160721 657 Ruminococcus albus 0 1264 1 species 1 no rank 421 0 552397 species 1 0 421 [Clostridium] cellulosi 29343 family 12 1 186804 35 0 21950 Peptostreptococcaceae genus 1 2 0 Clostridioides 10032 1870884 8 0 Clostridioides difficile 10024 1496 species 1 Acetoanaerobium 2984 0 7 186831 2 1 genus 1511 2977 Acetoanaerobium sticklandii 0 1 species Filifactor 1286 0 2 44259 1 2 genus 143361 Filifactor alocis 1284 0 1 species 1411023 1820 0 1 no rank 0 Peptostreptococcaceae bacterium oral taxon 929 1820 2081703 species 1 genus 2 1 1849828 3 0 Paeniclostridium 5092 1505 5089 Paeniclostridium sordellii 0 1 species 1481960 3 Peptoclostridium 701 0 2 1 genus 1 species Peptoclostridium acidaminophilum 698 0 1731 647 Symbiobacteriaceae 0 543349 8 3 1 family 5 2733 0 639 Symbiobacterium genus 1 2 2734 0 634 Symbiobacterium thermophilum species 1 990719 0 282 family 1 0 282 990721 genus 1 Christensenella massiliensis 282 0 1805714 1 species 21386 Lachnospiraceae 0 186803 53 1 25 family 0 1568 28050 genus 1 species 1 39485 0 1568 [Eubacterium] eligens 0 449 2719313 genus 1 208479 449 [Clostridium] bolteae 0 1 species 1 genus 2029 0 2569097 1 species 2029 [Eubacterium] hallii 0 39488 377 Roseburia 0 841 4 1 2 genus species 1 301301 0 Roseburia hominis 373 1 genus 3569 0 698776 1 species 3569 Cellulosilyticum lentocellum 0 29360 genus 2 1 0 1391 Anaerostipes 1 207244 649756 0 Anaerostipes hadrus 1390 species 1 genus 4 1 0 Lachnoclostridium 3403 6 1506553 0 Lachnoclostridium phocaeense 449 1871021 species 1 1 no rank 2608895 594 0 0 594 Lachnoclostridium sp. YL32 1834196 species 1 species 1 0 Lachnoclostridium phytofermentans 2354 66219 0 724 2719231 genus 1 84030 0 [Clostridium] saccharolyticum 724 species 1 2 no rank 186928 1402 0 1 species 888 [Eubacterium] rectale 0 39491 1 species 514 Lachnospiraceae bacterium oral taxon 500 0 712991 2 1 genus 991 Anaerotignum 0 2039240 1 species 1 28446 0 Anaerotignum propionicum 990 genus 3 1 572511 1 0 Blautia 1551 no rank 1 0 562 2648079 1 species Blautia sp. YL58 562 0 1796616 species 1 0 Blautia hansenii 988 1322 1 genus 1663717 1455 0 1 species 1679721 1455 Herbinix luporum 0 2424 Butyrivibrio 0 2 830 3 1 genus 185008 0 1140 Butyrivibrio hungatei species 1 1 species 43305 Butyrivibrio proteoclasticus 1282 0 186806 8 0 3214 Eubacteriaceae family 5 1 genus 2 1 23 1730 0 Eubacterium 1736 1736 Eubacterium limosum 1713 0 1 species 2 1 genus 1470 Acetobacterium 0 33951 7 33952 Acetobacterium woodii 1463 0 1 species 0 Clostridiaceae 203178 213 31979 family 1 41 Candidatus Arthromitus 8710 0 111 49082 1 4 genus no rank 3 2638829 0 8599 1508644 0 2954 Candidatus Arthromitus sp. SFB-mouse-NL species 1 species 1 1041504 0 2739 Candidatus Arthromitus sp. SFB-rat-Yit 49118 0 2906 Candidatus Arthromitus sp. SFB-mouse species 1 1 30 genus 1146 1485 187694 Clostridium 0 1 species 238834 Clostridium estertheticum 4534 0 1509 0 Clostridium sporogenes 4845 species 1 84022 0 3037 Clostridium aceticum species 1 0 8454 Clostridium baratii 1561 species 1 species 1 169679 0 Clostridium saccharobutylicum 7120 0 Clostridium tyrobutyricum 3498 1519 species 1 Clostridium chauvoei 4676 0 46867 1 species 1493 4657 Clostridium cellulovorans 0 1 species 0 Clostridium bornimense 5804 1216932 species 1 1 species 1491 Clostridium botulinum 35613 0 species 1 36745 0 Clostridium saccharoperbutylacetonicum 7822 1 species Clostridium butyricum 7612 0 1492 29341 Clostridium argentinense 5158 0 1 species 0 1952 2614128 no rank 2 1042156 0 228 Clostridium sp. SY8519 species 1 0 Clostridium sp. BNL1100 1724 755731 species 1 1520 0 Clostridium beijerinckii 10122 species 1 6248 Clostridium scatologenes 0 1548 1 species 1534 5265 Clostridium kluyveri 0 1 species 1502 0 Clostridium perfringens 9771 species 1 1 species Clostridium ljungdahlii 4069 0 1538 species 1 1501 0 Clostridium pasteurianum 9936 species 1 1488 0 4603 Clostridium acetobutylicum 4989 Clostridium taeniosporum 0 394958 1 species species 1 0 Clostridium autoethanogenum 3843 84023 0 Clostridium tetani 5574 1513 species 1 species 1 1542 0 4178 Clostridium novyi species 1 0 4164 Clostridium cochlearium 1494 species 1 217159 0 Clostridium carboxidivorans 6048 2956 Clostridium formicaceticum 0 1497 1 species 3 1 genus 114627 9 4500 Alkaliphilus 0 461876 0 1785 Alkaliphilus oremlandii species 1 Alkaliphilus metalliredigens 2706 0 208226 1 species 1981033 Mordavella 1 0 1 genus 0 Geosporobacter 2060 2 390805 genus 2 1 1 species 1424294 2058 Geosporobacter ferrireducens 0 family 29 1 0 15695 Peptococcaceae 57 186807 2282740 0 768 genus 1 species 1 102134 0 Desulfotomaculum gibsoniae 768 36 1562 0 2994 Desulfotomaculum genus 5 1 species 1 0 689 Desulfotomaculum ferrireducens 1833852 1 species 1564 Desulfotomaculum ruminis 768 0 species 1 0 974 Desulfotomaculum reducens 59610 1565 0 527 Desulfotomaculum nigrificans species 1 1 4 genus Dehalobacter 1516 0 56112 23 no rank 2 0 1072 2635733 species 1 1131462 0 Dehalobacter sp. CF 547 1147129 Dehalobacter sp. DCA 525 0 1 species Dehalobacter restrictus 421 0 55583 1 species genus 2 1 1 278993 0 522 Thermincola 863643 Thermincola potens 521 0 1 species genus 1 4 79206 4 0 3683 Desulfosporosinus 79209 Desulfosporosinus meridiei 1305 0 1 species 885581 0 1110 Desulfosporosinus acidiphilus species 1 species 1 1563 0 Desulfosporosinus orientis 1264 genus 2 1 0 650 Syntrophobotulus 9 51196 51197 0 641 Syntrophobotulus glycolicus species 1 0 986 Dehalobacterium 1 51514 genus 2 1 1 species Dehalobacterium formicoaceticum 985 0 51515 0 Desulfitobacterium 3053 36853 16 genus 1 5 142877 0 Desulfitobacterium metallireducens 838 species 1 species 1 0 Desulfitobacterium hafniense 754 49338 species 1 0 Desulfitobacterium dehalogenans 604 36854 species 1 0 Desulfitobacterium dichloroeliminans 841 233055 1054 0 2282742 1 genus 1 species Desulfotomaculum acetoxidans 1054 0 58138 4 471826 0 412 Candidatus Desulforudis genus 1 2 408 Candidatus Desulforudis audaxviator 0 471827 1 species family 2 216572 0 357 genus 1 2 0 Oscillibacter 357 6 459786 351091 0 Oscillibacter valericigenes 351 species 1 0 Halanaerobiales 15993 53433 49 order 1 11 4 1 family Halobacteroidaceae 5002 0 53434 35 1 2 genus 3187 Halobacteroides 0 13 42417 species 1 42422 0 Halobacteroides halobius 3174 28186 1780 0 1 genus 1780 Acetohalobium arabaticum 0 28187 1 species family 6 1 30 972 0 Halanaerobiaceae 10942 genus 2 1 32636 76 0 Halothermothrix 1704 1 species Halothermothrix orenii 1628 0 31909 2330 55 0 9208 Halanaerobium genus 1 3 species 1 656519 0 Halanaerobium hydrogeniformans 4199 species 1 0 Halanaerobium praevalens 4954 2331 order 1 36 0 46025 Thermoanaerobacterales 62 68295 family 1 13 543371 43 0 21359 Thermoanaerobacterales Family III. Incertae Sedis 0 5415 Thermoanaerobacterium 24 28895 genus 1 3 species 1 1517 0 Thermoanaerobacterium thermosaccharolyticum 3555 29329 Thermoanaerobacterium xylanolyticum 1836 0 1 species 0 15901 Caldicellulosiruptor 44000 306 genus 9 1 1 species 1650 Caldicellulosiruptor kristjanssonii 0 52765 species 1 0 2163 Caldicellulosiruptor kronotskyensis 413889 2164 Caldicellulosiruptor saccharolyticus 0 44001 1 species 1977 Caldicellulosiruptor hydrothermalis 0 413888 1 species 31899 2019 Caldicellulosiruptor bescii 0 1 species 1 species Caldicellulosiruptor owensensis 1916 0 55205 Caldicellulosiruptor obsidiansis 1889 0 717609 1 species species 1 52766 0 Caldicellulosiruptor lactoaceticus 1817 227387 5 0 Thermodesulfobiaceae 2574 family 3 1 1 2 genus 2569 Thermodesulfobium 0 227388 3 1 species 2566 Thermodesulfobium narugense 0 184064 0 435 543372 family 1 252965 0 435 genus 1 252966 Mahella australiensis 435 0 1 species 0 21595 Thermoanaerobacteraceae 35 186814 family 1 18 1 9 genus 17999 Thermoanaerobacter 0 937 1754 46354 0 Thermoanaerobacter wiegelii 2271 species 1 species 1 2325 0 2259 Thermoanaerobacter kivui 2636821 4368 0 2 no rank 1 species 2123 Thermoanaerobacter sp. X514 0 399726 Thermoanaerobacter sp. X513 2245 0 573062 1 species species 1 583357 0 Thermoanaerobacter mathranii 2150 496866 0 Thermoanaerobacter pseudethanolicus 1912 species 1 1 species 29323 Thermoanaerobacter brockii 1912 0 108150 Thermoanaerobacter italicus 2190 0 1 species 2 140458 391 Thermacetogenium 0 2 1 genus 85874 389 Thermacetogenium phaeum 0 1 species 1622 Caldanaerobacter 0 1 249529 2 1 genus species 1 0 Caldanaerobacter subterraneus 1621 911092 0 920 129957 genus 1 species 1 0 920 Carboxydothermus hydrogenoformans 129958 42857 628 0 3 no rank 215 0 42837 1 genus 0 Ammonifex degensii 215 42838 species 1 2 1 genus 44260 1 Moorella 413 0 1 species 1525 412 Moorella thermoacetica 0 0 Negativicutes 13427 909932 34 class 1 29 order 14 1 0 Selenomonadales 8545 909929 59 1843491 10 Selenomonadaceae 4039 0 9 1 family 61 970 0 2006 Selenomonas genus 1 6 69823 0 477 Selenomonas sputigena species 1 species 1 0 551 Selenomonas ruminantium 971 0 917 2637378 no rank 3 1884263 295 Selenomonas sp. oral taxon 920 0 1 species Selenomonas sp. oral taxon 478 310 0 712538 1 species 1 species 713030 Selenomonas sp. oral taxon 136 312 0 0 Megamonas 2023 5 158846 genus 1 2 2018 Megamonas hypermegale 0 158847 1 species family 1 4 17 1843490 0 Sporomusaceae 4447 0 4430 Pelosinus 365348 10 genus 3 1 365349 Pelosinus fermentans 2097 0 1 species 0 2323 2629460 no rank 1 0 Pelosinus sp. UFO1 2323 484770 species 1 6 1843488 Acidaminococcales 747 0 5 1 order 12 909930 0 Acidaminococcaceae 741 family 4 1 genus 1 3 0 Acidaminococcus 729 1 904 species 1 187327 0 281 Acidaminococcus intestini 905 447 Acidaminococcus fermentans 0 1 species 1843489 34 Veillonellales 4101 0 9 1 order Veillonellaceae 4067 0 30 31977 8 1 family 29465 26 Veillonella 2004 0 1 3 genus 1431 Veillonella parvula 0 29466 1 species species 1 248315 0 547 Veillonella rodentium 0 369 909928 genus 1 1702287 0 369 Negativicoccus massiliensis species 1 0 434 Megasphaera 5 906 genus 1 2 907 0 Megasphaera elsdenii 429 species 1 39948 1230 0 1 genus Dialister pneumosintes 1230 0 39950 1 species phylum 44 0 8173 200795 8 1 class 301297 5 Dehalococcoidia 1697 0 670486 14 Dehalogenimonas 551 0 3 1 genus 1 species 236 Dehalogenimonas lykanthroporepellens 0 552810 1 species Dehalogenimonas formicexedens 301 0 1839801 4 1 order 1202465 6 1141 Dehalococcoidales 0 1202464 1135 0 3 family 1135 Dehalococcoides 0 5 61434 3 1 genus 1 no rank 237581 284 0 1 species Dehalococcoides sp. UCH007 284 0 1522671 61435 Dehalococcoides mccartyi 846 0 1 species class 1 8 292625 6 0 Anaerolineae 1181 Anaerolineales 1175 0 3 292629 1 7 order 292628 6 0 Anaerolineaceae 1172 family 1 6 283 0 1324991 1 no rank 0 Anaerolineaceae bacterium oral taxon 439 283 1889813 species 1 Brevefilum 437 0 4 2019482 1 2 genus 1 species 1986204 Brevefilum fermentans 433 0 233189 1 0 446 Anaerolinea genus 1 2 species 1 0 Anaerolinea thermophila 445 167964 3 1382928 1009 Ardenticatenia 0 1 5 class 1006 Ardenticatenales 0 10 1382929 1 4 order Ardenticatenaceae 996 0 5 1382930 1 3 family 3 1988031 991 Candidatus Promineofilum 0 1 2 genus 0 988 Candidatus Promineofilum breve 1806508 species 1 1 11 class 32061 7 2683 Chloroflexia 0 23 32064 2676 Chloroflexales 0 10 1 order 0 1523 1508594 suborder 5 4 1106 Chloroflexaceae 1523 0 1 5 family 1 4 genus 1519 Chloroflexus 0 19 1107 0 Chloroflexus aggregans 582 152260 species 1 918 Chloroflexus aurantiacus 0 459 1108 1 2 species 1 strain 480224 459 Chloroflexus sp. Y-400-fl 0 1130 0 1508595 4 suborder 1130 Roseiflexaceae 0 1508635 5 4 1 family 6 120961 0 1125 Roseiflexus genus 3 1 1 no rank 594 0 2609473 594 Roseiflexus sp. RS-1 0 357808 1 species species 1 120962 0 525 Roseiflexus castenholzii 0 578 Caldilineae 475962 6 class 4 1 0 572 475963 order 3 475964 4 Caldilineaceae 572 0 1 3 family genus 2 1 0 Caldilinea 568 233191 3 species 1 133453 0 565 Caldilinea aerophila 8 189775 Thermomicrobia 1025 0 1 8 class 4 subclass 85000 720 0 16 85001 0 Sphaerobacterales 720 order 1 4 3 suborder 255728 704 0 3 85002 Sphaerobacteraceae 704 0 3 1 family 2 1 genus Sphaerobacter 701 0 3 2056 1 species Sphaerobacter thermophilus 698 0 2057 1 3 order 297 Thermomicrobiales 0 189776 4 family 1 2 1 189777 0 Thermomicrobiaceae 293 0 292 499 genus 1 1 species 292 Thermomicrobium roseum 0 500 phylum 5 200938 0 704 Chrysiogenetes 704 0 5 118001 1 5 class order 4 1 0 699 Chrysiogenales 9 189769 0 690 Chrysiogenaceae 7 189770 family 1 3 1 2 genus 11 393029 683 Desulfurispirillum 0 672 Desulfurispirillum indicum 0 936456 1 species 9 phylum 7682 0 200940 7682 Thermodesulfobacteria 0 18 67799 1 9 class 7664 Thermodesulfobacteriales 0 188710 20 8 1 order Thermodesulfobacteriaceae 7644 0 188711 56 7 1 family 2 1 genus 1020 Thermodesulfatator 0 241192 6 171695 Thermodesulfatator indicus 1014 0 1 species 0 5463 Thermodesulfobacterium 7 1740 genus 3 1 1295609 0 4041 Thermodesulfobacterium geofontis species 1 1415 Thermodesulfobacterium commune 0 1741 1 species 444090 0 1105 genus 1 1 species 1653476 Caldimicrobium thiodismutans 1105 0 3 no rank 2428 0 2323 0 2428 1783234 clade 3 2 clade 2201 0 95901 0 2201 2497643 class 2 2497644 2201 0 2 order 2497645 0 2201 family 2 2201 Candidatus Babela 0 1551504 39 2 1 genus species 1 673862 0 2162 Candidatus Babela massiliensis 0 227 95818 phylum 1 no rank 1 0 227 1895827 2056494 0 227 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 1 40117 7559 0 14 phylum 203693 64 Nitrospira 7559 0 1 14 class order 1 13 189778 42 0 Nitrospirales 7495 189779 43 0 Nitrospiraceae 7453 family 12 1 28261 11 0 4161 Thermodesulfovibrio genus 2 1 0 Thermodesulfovibrio yellowstonii 4150 28262 species 1 4 1 genus 16 179 1536 Leptospirillum 0 1 species group 261386 462 0 178606 462 Leptospirillum ferriphilum 0 1 species 432 0 261385 1 species group species 1 1660083 0 Leptospirillum sp. Group II 'CF-1' 432 655606 626 0 1 species group species 1 0 Leptospirillum ferrooxidans 626 180 43 1234 0 1713 Nitrospira genus 1 5 1 species 1715989 Candidatus Nitrospira inopinata 342 0 0 399 Nitrospira japonica 1325564 species 1 0 Nitrospira moscoviensis 586 42253 species 1 1 species 330214 343 Nitrospira defluvii 0 phylum 3 2138240 0 674 2138243 6 0 674 Coprothermobacteria class 3 1 668 Coprothermobacterales 0 2138246 4 1 2 order family 1 0 664 2138247 genus 1 0 664 68335 0 Coprothermobacter proteolyticus 664 35786 species 1 3338935 Proteobacteria 0 659 1224 1 2070 phylum 1 7 class 1807140 1 Acidithiobacillia 2186 0 88 225057 0 2185 Acidithiobacillales order 1 6 31 225058 2097 Acidithiobacillaceae 0 5 1 family genus 4 1 0 Acidithiobacillus 2066 53 119977 782 Acidithiobacillus caldus 0 33059 1 species Acidithiobacillus ferrivorans 634 0 160808 1 species 0 Acidithiobacillus ferrooxidans 597 920 species 1 574 1 class 28211 1182 Alphaproteobacteria 1469018 0 78434 Sphingomonadales 0 204457 513 1 82 order 0 18789 Erythrobacteraceae 335929 317 family 1 22 genus 4 1 0 2692 Altererythrobacter 361177 291 361183 0 888 Altererythrobacter epoxidivorans species 1 1 species 1267766 810 Altererythrobacter atlanticus 0 703 Altererythrobacter ishigakiensis 0 476157 1 species 0 1822 1855416 genus 2 0 1147 Erythrobacter flavus 192812 species 1 266951 675 Erythrobacter seohaensis 0 1 species 2800682 1449 0 1 genus 1449 Altererythrobacter namhicola 0 645517 1 species genus 1 2800685 0 698 1 species Altererythrobacter marensis 698 0 543877 2800788 5439 0 6 no rank 0 Erythrobacter 3298 359 1041 genus 3 1 39960 Erythrobacter litoralis 2001 0 1 species 1112 0 Porphyrobacter neustonensis 938 species 1 1111 149 0 2141 Porphyrobacter genus 3 1 no rank 2 2683265 0 1992 1 species 1896196 Porphyrobacter sp. LM 6 1009 0 species 1 0 983 Porphyrobacter HT-58-2 2023229 genus 3 1 0 Croceicoccus 2038 49 1295327 0 Croceicoccus marinus 1144 450378 species 1 1 species 1348774 Croceicoccus naphthovorans 845 0 2 genus 2800686 1342 0 692370 623 Altererythrobacter dongtanensis 0 1 species 0 Altererythrobacter mangrovi 719 1982042 species 1 2 genus 2800681 2992 0 1 species 1648404 Erythrobacter atlanticus 1516 0 Erythrobacter gangjinensis 1476 0 502682 1 species 0 Sphingomonadaceae 59132 41297 900 family 1 59 1 5 genus 4335 Novosphingobium 0 123 165696 no rank 1 0 1073 2644732 1 species 702113 Novosphingobium sp. PP1Y 1073 0 0 Novosphingobium aromaticivorans 869 48935 species 1 species 1 205844 0 927 Novosphingobium pentaromativorans 158500 Novosphingobium resinovorum 1343 0 1 species 15 1 genus Sphingobium 12784 0 165695 566 5260 0 2611147 6 no rank 484429 0 903 Sphingobium sp. YBL2 species 1 627192 957 Sphingobium sp. SYK-6 0 1 species 0 645 Sphingobium sp. EP60837 1855519 species 1 1315974 0 Sphingobium sp. TKS 993 species 1 1 species Sphingobium sp. MI1205 849 0 407020 1 species 1843368 Sphingobium sp. RAC03 913 0 1 species 728 Sphingobium baderi 0 1332080 species 1 46429 0 Sphingobium chlorophenolicum 790 13690 1302 Sphingobium yanoikuyae 0 1 species species 1 332055 0 830 Sphingobium indicum 0 850 Sphingobium cloacae 120107 species 1 76947 0 Sphingobium herbicidovorans 705 species 1 Sphingobium hydrophobicum 791 0 1673076 1 species species 1 332056 0 Sphingobium japonicum 962 54 1434046 0 2468 Sphingorhabdus genus 1 3 no rank 2 0 2414 2614947 Sphingorhabdus sp. YGSMI21 1289 0 2077182 1 species 1806885 0 1125 Sphingorhabdus sp. M41 species 1 2709685 1111 0 1 genus 1 species 266812 Sphingorhabdus flavimaris 1111 0 2 1 genus 1214 Blastomonas 0 17 150203 2626550 0 1197 no rank 1 1 species 1842535 1197 Blastomonas sp. RAC04 0 Sphingomonas 18526 0 13687 535 15 1 genus 0 7120 196159 no rank 6 species 1 1030157 0 977 Sphingomonas sp. KC8 0 Sphingomonas sp. LM7 871 1938607 species 1 0 1092 Sphingomonas sp. MM-1 745310 species 1 species 1 1961362 0 995 Sphingomonas sp. NIC1 species 1 1390395 0 Sphingomonas sp. LK11 2217 1 species 1327635 968 Sphingomonas sp. Cra20 0 1129 Sphingomonas taxi 0 1549858 1 species 1 species 1609977 1174 Sphingomonas hengshuiensis 0 1 species Sphingomonas panacis 1081 0 1560345 93064 0 1159 Sphingomonas koreensis species 1 Sphingomonas sanxanigenens 1404 0 397260 1 species 0 3835 Sphingomonas wittichii 1951 160791 species 2 1 1 strain 1283312 Sphingomonas sp. DC-6 1884 0 152682 Sphingomonas melonis 1089 0 1 species 1 genus 981 0 2685927 species 1 0 981 Sphingomonas sp. JJ-A5 1921510 0 1330 Rhizorhabdus 1649486 10 genus 2 1 1850238 1320 Rhizorhabdus dicambivorans 0 1 species 21 72173 990 Citromicrobium 0 2 1 genus 1 no rank 969 0 2630544 1 species Citromicrobium sp. JL477 969 0 1634516 genus 1 10 0 Sphingopyxis 11660 287 165697 33050 Sphingopyxis macrogoltabida 2050 0 1 species 1 species 1515612 871 Sphingopyxis fribergensis 0 4 no rank 5435 0 2614943 0 1141 Sphingopyxis sp. QXT-31 1357916 species 1 1866325 1174 Sphingopyxis sp. MG 0 1 species 1 species 1913578 Sphingopyxis sp. LPB0140 2288 0 0 832 Sphingopyxis sp. 113P3 292913 species 1 0 Sphingopyxis alaskensis 836 117207 species 1 species 1 267128 0 1189 Sphingopyxis granuli species 1 0 992 Sphingopyxis terrae 33052 5 541 0 2833 Zymomonas genus 2 1 species 1 542 0 2828 Zymomonas mobilis no rank 8 0 15092 82117 118 991903 Polymorphum 2243 0 2 1 genus 991904 0 Polymorphum gilvum 2125 species 1 17 213485 Micavibrio 1676 0 2 1 genus species 1 349221 0 Micavibrio aeruginosavorus 1659 clade 2 0 9404 62654 2 1 genus 9404 Candidatus Puniceispirillum 0 64 767891 767892 0 Candidatus Puniceispirillum marinum 9340 species 1 42 1632780 Phreatobacter 1769 0 2 1 genus 0 1727 Phreatobacter sp. S-12 1868589 species 1 1816 0 2800059 2 order family 2 0 1816 2800061 74317 38 Maricaulis 1816 0 2 1 genus 0 Maricaulis maris 1778 74318 species 1 order 6 2800060 0 7718 1 6 family 7718 Hyphomonadaceae 0 69657 113 3 1 genus 85 116 Hyphomonas 4100 0 no rank 1 2630699 0 2582 2582 Hyphomonas sp. Mor2 0 1906738 1 species 1402 Hyphomonas neptunium 0 81032 1 species 62 2723 0 3505 Hirschia genus 2 1 1 species 3443 Hirschia baltica 0 2724 420 204441 0 73924 Rhodospirillales order 67 1 Rhodospirillaceae 48780 0 41295 664 31 1 family genus 1 2 21 1543705 0 2295 Nitrospirillum 1 species Nitrospirillum amazonense 2274 0 28077 8 1263978 Candidatus Endolissoclinum 6771 0 2 1 genus species 1 0 Candidatus Endolissoclinum faulkneri 6763 1263979 2 1 genus Haematospirillum 1427 0 7 1804663 0 Haematospirillum jordaniae 1420 1549855 species 1 0 2508 Tistrella 56 171436 genus 1 2 1 species 2452 Tistrella mobilis 0 171437 1182780 17 1864 Magnetospira 0 1 2 genus 0 1847 2685734 no rank 1 1 species Magnetospira sp. QH-2 1847 0 1288970 genus 3 1 73 1081 0 4138 Rhodospirillum 1 species 2163 Rhodospirillum centenum 0 34018 1 species Rhodospirillum rubrum 1902 0 1085 Azospirillum 13227 0 191 358 1 5 genus 528244 2578 Azospirillum thiophilum 0 1 species 0 Azospirillum humicireducens 1565 1226968 species 1 193 0 Azospirillum lipoferum 4545 species 1 0 Azospirillum brasilense 4181 192 species 1 80 168934 Thalassospira 4326 0 1 3 genus Thalassospira xiamenensis 2200 0 220697 1 species species 1 2048283 0 Thalassospira sp. CSC3H3 2046 genus 5 1 0 Magnetospirillum 8693 13134 472 species 1 84159 0 1658 Magnetospirillum magneticum species 1 0 2484 Magnetospirillum gryphiswaldense 55518 2 no rank 2617991 4079 0 1639348 Magnetospirillum sp. ME-1 2107 0 1 species Magnetospirillum sp. XM-1 1972 0 1663591 1 species genus 2 1 1612157 35 0 Pararhodospirillum 1288 1084 0 1253 Pararhodospirillum photometricum species 1 18 1543704 1579 Niveispirillum 0 2 1 genus 1612173 0 1561 Niveispirillum cyanobacteriorum species 1 0 24724 Acetobacteraceae 249 433 family 35 1 2 1 genus 1066 Gluconacetobacter 0 11 89583 1 species 1055 Gluconacetobacter diazotrophicus 0 33996 7640 Acetobacter 0 434 84 1 8 genus 438 0 Acetobacter pasteurianus 3017 species 1 Acetobacter pomorum 757 0 65959 1 species 151157 0 655 subgenus 1 435 0 655 Acetobacter aceti species 1 species 1 1076596 0 Acetobacter persici 642 species 1 446692 0 780 Acetobacter senegalensis 1633874 809 Acetobacter oryzifermentans 0 1 species 1 species 104102 Acetobacter tropicalis 896 0 3 1 genus 102 522 Acidiphilium 3069 0 Acidiphilium multivorum 1533 0 62140 1 species 524 1434 Acidiphilium cryptum 0 1 species 82 1434011 0 3524 Komagataeibacter genus 1 5 species 1 33995 0 543 Komagataeibacter europaeus species 1 0 971 Komagataeibacter nataicola 265960 species 1 28448 0 1295 Komagataeibacter xylinus 1 species Komagataeibacter medellinensis 633 0 1177712 116 125216 Roseomonas 3537 0 1 3 genus 257708 0 1692 Roseomonas gilardii species 1 2617492 0 1729 no rank 1 2018065 Roseomonas sp. FDAARGOS_362 1729 0 1 species 9 320496 0 Neoasaia 571 genus 2 1 1 species 562 Neoasaia chiangmaiensis 0 320497 470 Parasaccharibacter 0 8 1602345 2 1 genus 1 species Parasaccharibacter apium 462 0 1510841 706 Asaia 0 91914 10 1 2 genus 0 Asaia bogorensis 696 91915 species 1 153497 5 755 Kozakia 0 2 1 genus 153496 Kozakia baliensis 750 0 1 species genus 1 2 15 364409 0 1567 Granulibacter species 1 364410 0 1552 Granulibacter bethesdensis genus 3 1 22 441 0 Gluconobacter 1570 1 species 1053 Gluconobacter oxydans 0 442 318683 0 495 Gluconobacter albidus species 1 255473 11 0 2159 Parvularculales order 4 1 family 1 3 0 2148 Parvularculaceae 255474 34 2 1 genus 2114 Parvularcula 0 43 208215 0 Parvularcula bermudensis 2071 208216 species 1 Rhizobiales 272619 0 1569 356 1 212 order 54 772 68202 Bartonellaceae 0 1 18 family 17 1 genus 1548 773 68148 Bartonella 0 33045 3924 Bartonella grahamii 0 1 species 56426 0 4499 Bartonella clarridgeiae species 1 38323 Bartonella henselae 3831 0 1 species species 1 803 0 Bartonella quintana 3360 33047 3830 Bartonella vinsonii 0 1 species 29330 0 2645622 6 no rank 1 species Bartonella sp. WD16.2 4903 0 1933904 1 species 1933910 5033 Bartonella sp. A1379B 0 0 Bartonella sp. JB63 4856 1933907 species 1 species 1 515256 0 4752 Bartonella sp. 1-1C 1933912 0 Bartonella sp. Raccoon60 4924 species 1 Bartonella sp. JB15 4862 0 1933906 1 species 2173 Bartonella australis 0 388640 1 species 774 0 Bartonella bacilliformis 4417 species 1 3393 Bartonella apis 0 1686310 1 species species 1 85701 0 3781 Bartonella tribocorum species 1 1318743 0 4062 Bartonella ancashensis 0 Beijerinckiaceae 2358 45404 12 family 5 1 0 1155 Methylocella 30 120652 genus 2 1 0 Methylocella silvestris 1125 199596 species 1 0 1191 Beijerinckia 42 532 genus 1 2 0 1149 Beijerinckia indica 533 species 1 10 119043 2429 Rhodobiaceae 0 3 1 family genus 1 2 53 256616 0 2419 Parvibaculum 0 Parvibaculum lavamentivorans 2366 256618 species 1 1 15 family Methylobacteriaceae 20966 0 123 119045 genus 1 9 407 646 0 12361 Methylobacterium 334852 1138 Methylobacterium oryzae 0 1 species species 1 270351 0 Methylobacterium aquaticum 1944 Methylobacterium radiotolerans 1421 0 31998 1 species species 1 114616 0 1748 Methylobacterium nodulans no rank 3 2615210 0 4302 Methylobacterium sp. AMS5 986 0 925818 1 species 1 species 426117 Methylobacterium sp. 4-46 2013 0 1 species 1479019 1303 Methylobacterium sp. C1 0 418223 Methylobacterium phyllosphaerae 1162 0 1 species genus 3 0 7074 2282523 species 1 0 1035 Methylobacterium zatmanii 29429 1 species 2211 Methylobacterium populi 0 223967 species 1 0 Methylobacterium extorquens 3828 408 genus 1 2 44 186650 0 Microvirga 1408 1882682 0 1364 Microvirga ossetica species 1 family 1 20 0 Phyllobacteriaceae 21844 164 69277 1 2 genus 49 245876 Nitratireductor 1634 0 1 species 1585 Nitratireductor basaltis 0 472175 1 2 genus Hoeflea 1803 0 41 274591 1 no rank 2614931 1762 0 1 species Hoeflea sp. IMCC20628 1762 0 1620421 449972 36 0 Chelativorans 971 genus 2 1 no rank 1 2643807 0 935 935 Chelativorans sp. BNC1 0 266779 1 species 1 2 genus 17 28100 Phyllobacterium 1279 0 1867719 0 Phyllobacterium zundukense 1262 species 1 Aminobacter 1727 0 71 31988 1 2 genus 1 species 1656 Aminobacter aminovorans 0 83263 1 9 genus 583 68287 14266 Mesorhizobium 0 species 1 1670800 0 Mesorhizobium sp. B7 1614 39645 0 2139 Mesorhizobium ciceri species 1 1 species 381 1618 Mesorhizobium loti 0 0 1762 325217 no rank 1 species 1 0 Mesorhizobium sp. WSM1497 1762 278153 593909 Mesorhizobium opportunistum 1710 0 1 species Mesorhizobium australicum 1509 0 536018 1 species 0 1679 Mesorhizobium japonicum 2066070 species 1 species 1 71433 0 1652 Mesorhizobium amorphae family 55 1 497 82115 0 Rhizobiaceae 69999 genus 2 1 323620 24 0 1884 Shinella 2643062 0 1860 no rank 1 1 species 879274 1860 Shinella sp. HZN7 0 36 no rank 227290 37436 0 2 1 genus 1764 Neorhizobium 0 1525371 9 399 Neorhizobium galegae 1755 0 1 species 214 357 0 9576 Agrobacterium genus 7 1 2 no rank 2632611 2169 0 972 Agrobacterium sp. H13-3 0 861208 1 species 1 species 1197 Agrobacterium sp. RAC06 0 1842536 1183400 0 5279 species group 2 Agrobacterium tumefaciens 4356 0 358 1 species Agrobacterium fabrum 923 0 1176649 1 species 1 species 359 Agrobacterium rhizogenes 930 0 1 species 373 984 Agrobacterium vitis 0 1 27 genus 26096 Rhizobium 0 1756 379 0 Rhizobium tropici 1024 398 species 1 1 species Rhizobium gallicum 1402 0 56730 no rank 21 2613769 0 11116 0 19 Rhizobium sp. N113 1703960 species 1 species 1 1703964 0 Rhizobium sp. N621 2 1981173 Rhizobium sp. NXC14 689 0 1 species species 1 0 1074 Rhizobium sp. ACO-34A 1571470 1 species 949 Rhizobium sp. NXC24 0 2048897 1 species 1703962 19 Rhizobium sp. N1341 0 species 1 0 846 Rhizobium sp. S41 1869170 1 species 2020313 Rhizobium sp. TAL182 295 0 2020311 0 730 Rhizobium sp. Kim5 species 1 1 species 709 Rhizobium sp. Y9 0 1914541 0 Rhizobium sp. IE4771 780 1301032 species 1 species 1 0 895 Rhizobium sp. IRBG74 424182 1703969 0 Rhizobium sp. N324 962 species 1 1703961 0 Rhizobium sp. N1314 174 species 1 1703966 0 174 Rhizobium sp. N731 species 1 1 species 950 Rhizobium sp. NT-26 0 1125847 1 species 1703968 Rhizobium sp. N871 1 0 2028343 980 Rhizobium sp. 10195 0 1 species 1 species 2020312 848 Rhizobium sp. CIAT894 0 0 Rhizobium sp. N6212 2 1703965 species 1 1 species 1703967 18 Rhizobium sp. N741 0 384 0 5970 Rhizobium leguminosarum species 1 0 Rhizobium etli 3034 29449 species 1 species 1 396 0 Rhizobium phaseoli 1794 16903 Liberibacter 0 34019 392 1 6 genus 309868 Candidatus Liberibacter americanus 4011 0 1 species 1 species Liberibacter crescens 3844 0 1273132 34020 0 2919 Candidatus Liberibacter africanus species 1 556287 0 Candidatus Liberibacter solanacearum 3207 species 1 species 1 34021 0 2530 Candidatus Liberibacter asiaticus 0 13279 227292 no rank 10 genus 1 3 36 106591 0 Ensifer 2509 0 1403 Ensifer adhaerens 106592 species 1 716925 0 Ensifer sojae 1070 species 1 28105 281 Sinorhizobium 10770 0 1 7 genus 110321 0 Sinorhizobium medicae 1076 species 1 0 2518 2613772 no rank 2 1082 Sinorhizobium sp. CCBAU 05631 0 794846 1 species 1 species 1842534 Sinorhizobium sp. RAC02 1436 0 0 2440 Sinorhizobium meliloti 382 species 1 663276 0 3143 species group 1 3143 Sinorhizobium fredii 0 380 1 species species 1 194963 0 Sinorhizobium americanum 1312 family 19 1 0 Hyphomicrobiaceae 14994 45401 156 genus 2 1 20 1068 0 1149 Rhodomicrobium 0 1129 Rhodomicrobium vannielii 1069 species 1 genus 1 2 0 Pelagibacterium 1125 29 1082930 1 species 531813 1096 Pelagibacterium halotolerans 0 4 1 genus 46913 227 4688 Devosia 0 no rank 3 196773 0 4461 1736675 0 1724 Devosia sp. A16 species 1 1643450 Devosia sp. H5989 1541 0 1 species 1 species 1196 Devosia sp. I507 0 2083786 37 119044 0 1249 Filomicrobium genus 1 2 0 1212 Candidatus Filomicrobium marinum 1608628 species 1 192 81 3501 Hyphomicrobium 0 1 4 genus 1 no rank 2619925 1103 0 1 species 1103 Hyphomicrobium sp. MC1 0 717785 1 species Hyphomicrobium denitrificans 1359 0 53399 847 Hyphomicrobium nitrativorans 0 1427356 1 species genus 1 2 0 Rhodoplanes 1640 29407 52 2619116 1588 0 1 no rank 674703 0 Rhodoplanes sp. Z2-YC6860 1588 species 1 59282 57 1486 Blastochloris 0 2 1 genus Blastochloris viridis 1429 0 1079 1 species family 6 1 31993 28 0 Methylocystaceae 3457 48 425 Methylosinus 1364 0 1 2 genus species 1 426 0 Methylosinus trichosporium 1316 0 2065 Methylocystis 133 93 genus 3 1 1 no rank 1051 0 2625913 187303 Methylocystis sp. SC2 1051 0 1 species 655015 0 Methylocystis bryophila 921 species 1 family 1 7 0 5686 Aurantimonadaceae 20 255475 154 293088 4229 Martelella 0 4 1 genus 293089 1752 Martelella mediterranea 0 1 species 1 no rank 2629616 1298 0 0 Martelella sp. AD-3 1298 686597 species 1 Martelella endophytica 1025 0 1486262 1 species genus 1 2 60 414371 0 1437 Aureimonas no rank 1 0 1377 2615206 species 1 1349819 0 1377 Aureimonas sp. AU20 0 Xanthobacteraceae 4892 75 335928 family 1 7 genus 1 2 0 1650 Starkeya 38 152053 1 species 921 1612 Starkeya novella 0 genus 2 1 0 1446 Azorhizobium 6 36 7 0 1410 Azorhizobium caulinodans species 1 43 279 0 1721 Xanthobacter genus 2 1 species 1 0 1678 Xanthobacter autotrophicus 280 family 1 26 41294 371 0 40009 Bradyrhizobiaceae genus 11 1 0 Bradyrhizobium 19224 771 374 44255 0 1828 Bradyrhizobium oligotrophicum species 1 no rank 6 0 10220 2631580 1 species 376 1704 Bradyrhizobium sp. 0 1 species 115808 1693 Bradyrhizobium sp. ORS 285 0 0 Bradyrhizobium sp. SK17 1804 2057741 species 1 species 1 0 Bradyrhizobium sp. CCGE-LA001 1505 1223566 114615 1710 Bradyrhizobium sp. ORS 278 0 1 species species 1 0 1804 Bradyrhizobium sp. BTAi1 288000 1 species Bradyrhizobium japonicum 2531 0 375 1 species 1355477 2472 Bradyrhizobium diazoefficiens 0 species 1 1274631 0 Bradyrhizobium icense 1402 0 Bosea 7051 329 85413 genus 1 5 3 no rank 2653178 4877 0 Bosea sp. PAMC 26642 1311 0 1792307 1 species 0 1720 Bosea sp. AS-1 2015316 species 1 1 species 1842539 1846 Bosea sp. RAC05 0 1526658 0 Bosea vaviloviae 1845 species 1 24 40136 1256 Oligotropha 0 2 1 genus 1232 Oligotropha carboxidovorans 0 40137 1 species 2 1 genus 26 1649510 Variibacter 1221 0 Variibacter gotjawalensis 1195 0 1333996 1 species Nitrobacter 1996 0 45 911 3 1 genus 1 species 912 Nitrobacter hamburgensis 1069 0 913 0 Nitrobacter winogradskyi 882 species 1 2 1 genus Rhodopseudomonas 8890 0 112 1073 0 Rhodopseudomonas palustris 8778 1076 species 1 family 1 20 36 118882 0 8074 Brucellaceae genus 5 1 0 Ochrobactrum 4756 528 153 271865 0 1131 Ochrobactrum sp. A44 species 1 419475 1142 Ochrobactrum pseudogrignonense 0 1 species 1 species 529 1069 Ochrobactrum anthropi 0 0 1261 Ochrobactrum pituitosum 571256 species 1 genus 14 1 0 3282 Brucella 234 1248 981386 246 Brucella vulpis 0 1 species 4 no rank 2632610 863 0 1 species 1885919 Brucella sp. 141012304 277 0 1891098 0 56 Brucella sp. 2002734562 species 1 Brucella sp. 09RB8471 275 0 1149952 1 species species 1 0 Brucella sp. 09RB8910 255 1844051 0 168 Brucella canis 36855 species 1 29461 Brucella suis 134 0 1 species 120577 Brucella ceti 168 0 1 species 236 0 Brucella ovis 41 species 1 species 1 120576 0 Brucella pinnipedialis 178 Brucella melitensis 95 0 29459 1 species Brucella abortus 87 0 235 1 species 444163 0 54 Brucella microti species 1 2036754 19 0 3650 Chelatococcaceae family 4 1 3631 Chelatococcus 0 142 28209 1 3 genus 1 species 444444 1540 Chelatococcus daeguensis 0 no rank 1 0 1949 2638111 species 1 0 Chelatococcus sp. CO-6 1949 1702325 119042 0 4490 no rank 6 0 Pseudorhodoplanes 1363 1734920 37 genus 1 2 species 1 0 1326 Pseudorhodoplanes sinuspersici 1235591 1484898 64 0 1364 Methyloceanibacter genus 1 2 species 1 0 1300 Methyloceanibacter caenitepidi 1384459 genus 2 1 56 1572860 0 1763 Hartmannibacter species 1 0 1707 Hartmannibacter diazotrophicus 1482074 1 20 order 18027 Caulobacterales 0 73 204458 19 1 family 17954 Caulobacteraceae 0 76892 354 genus 6 1 220 75 0 Caulobacter 8210 species 1 0 Caulobacter vibrioides 2309 155892 0 1353 Caulobacter segnis 88688 species 1 no rank 1 2648921 0 1555 366602 0 1555 Caulobacter sp. K31 species 1 69395 0 1200 Caulobacter henricii species 1 1 species 69666 Caulobacter mirabilis 1573 0 genus 2 1 34 76890 0 Asticcacaulis 988 78587 Asticcacaulis excentricus 954 0 1 species 23 20 0 Phenylobacterium 1544 genus 2 1 0 Phenylobacterium zucineum 1521 284016 species 1 0 970 81440 no rank 1 1759059 970 Caulobacteraceae bacterium OTSz_A_272 0 1 species Brevundimonas 5888 0 300 41275 1 7 genus 74313 Brevundimonas subvibrioides 961 0 1 species 2622653 2786 0 3 no rank 1532555 Brevundimonas sp. DS20 879 0 1 species 731 Brevundimonas sp. GW460-12-10-14-LB2 0 1827469 1 species Brevundimonas sp. LM2 1176 0 1938605 1 species Brevundimonas vesicularis 810 0 41276 1 species 0 Brevundimonas naejangsanensis 1031 588932 species 1 order 94 1 318 204455 0 116468 Rhodobacterales 1842 31989 Rhodobacteraceae 116150 0 93 1 family 1 2 genus 9 159345 1839 Roseibacterium 0 0 Roseibacterium elongatum 1830 159346 species 1 2 1 genus 26 1097466 2079 Defluviimonas 0 species 1 1335048 0 Defluviimonas alba 2053 1 2 genus Jannaschia 1494 0 17 188905 1 no rank 2645469 1477 0 290400 0 1477 Jannaschia sp. CCS1 species 1 1635 Tateyamaria 0 15 299261 1 2 genus species 1 299262 0 1620 Tateyamaria omphalii genus 1 2 12 1579315 0 1815 Halocynthiibacter species 1 1579316 0 Halocynthiibacter arcticus 1803 genus 1 5 65 875170 0 6499 Celeribacter species 1 1397108 0 1318 Celeribacter marinus species 1 0 1643 Celeribacter ethanolicus 1758178 1 species 1208324 Celeribacter indicus 1917 0 1 species 1411902 1556 Celeribacter manganoxidans 0 1 9 genus 177 265 12282 Paracoccus 0 1171 Paracoccus contaminans 0 1945662 1 species 1 species 34003 Paracoccus aminophilus 1257 0 0 Paracoccus aminovorans 1431 34004 species 1 species 1 0 Paracoccus zhejiangensis 1613 1077935 1 species Paracoccus denitrificans 1695 0 266 1 species 1569 Paracoccus sp. CBA4604 0 2065379 1 species Paracoccus yeei 1874 0 147645 1 no rank 1495 0 246570 0 Paracoccus sp. BM15 1495 1529068 species 1 1 4 genus Octadecabacter 4193 0 55 53945 53946 Octadecabacter arcticus 1472 0 1 species 0 1292 Octadecabacter temperatus 1458307 species 1 0 1374 Octadecabacter antarcticus 1217908 species 1 14 367771 0 2911 Marinovum genus 1 2 Marinovum algicola 2897 0 42444 1 species 5 1 genus 12785 Phaeobacter 0 302485 178 0 Phaeobacter piscinae 3085 1580596 species 1 1 species 1844006 1404 Phaeobacter porticola 0 species 1 0 Phaeobacter inhibens 4641 221822 1 species 60890 3477 Phaeobacter gallaeciensis 0 1 genus 5 Thalassococcus 0 436357 17 1609958 Confluentimicrobium 2049 0 2 1 genus 0 2032 2643318 no rank 1 0 2032 Confluentimicrobium sp. EMB200-NS6 1609966 species 1 22 360528 2587 Pelagibaca 0 1 2 genus 1250539 0 2565 Pelagibaca abyssi species 1 genus 1 0 1984 2211641 245188 0 Loktanella vestfoldensis 1984 species 1 2 1 genus Sagittula 2257 0 11 58842 2624628 2246 0 1 no rank 2009329 0 2246 Sagittula sp. P11 species 1 34008 80 0 Rhodovulum 6247 genus 4 1 no rank 2 0 3383 2631432 1 species 308754 Rhodovulum sp. MB263 1746 0 1 species 1564506 1637 Rhodovulum sp. P5 0 1 species 2784 Rhodovulum sulfidophilum 0 35806 genus 1 5 0 8206 Rhodobacter 95 1060 species 1 1061 0 1360 Rhodobacter capsulatus 3242 0 196779 2 no rank 1 species 2033869 1671 Rhodobacter sp. CZR27 0 species 1 0 Rhodobacter sp. LPB0142 1571 1850250 1063 0 3509 Rhodobacter sphaeroides species 1 1 2 genus 17 74030 2058 Roseovarius 0 2041 Roseovarius mucosus 0 215743 1 species genus 2 1 5 1759396 0 Marivivens 1179 no rank 1 2622455 0 1174 1 species 1174 Marivivens sp. JLT3646 0 1920883 genus 2 1 1 1284657 0 Planktomarina 2209 species 1 0 Planktomarina temperata 2208 1284658 197 478070 0 Labrenzia 4993 genus 1 4 species 1 187304 0 1585 Labrenzia aggregata 2 no rank 2648686 3211 0 1674922 0 Labrenzia sp. CP4 1495 species 1 Labrenzia sp. VG12 1716 0 2021862 1 species 1649279 0 1405 genus 1 1 species 379347 1405 Ruegeria mobilis 0 2492 0 58840 2 no rank species 1 0 Rhodobacteraceae bacterium QY30 1263 2033435 1904441 1229 Rhodobacteraceae bacterium 0 1 species 2 1 genus 1659 Pannonibacter 0 227873 35 1624 Pannonibacter phragmitetus 0 121719 1 species genus 3 1 0 2220 Ketogulonicigenium 20 92944 0 Ketogulonicigenium vulgare 1242 92945 species 1 species 1 0 958 Ketogulonicigenium robustum 92947 2433 52 Roseobacter 3362 0 3 1 genus 42443 0 Roseobacter litoralis 1725 species 1 1585 Roseobacter denitrificans 0 2434 1 species 9 285107 1495 Thioclava 0 2 1 genus 1 species 1486 Thioclava nitratireducens 0 1915078 1 3 genus 97050 58 Ruegeria 4218 0 89184 0 Ruegeria pomeroyi 2737 species 1 0 1423 2625375 no rank 1 1423 Ruegeria sp. TM1040 0 292414 1 species genus 2 263377 0 4425 1229727 2275 Thiobacimonas profunda 0 1 species no rank 1 2640570 0 2150 species 1 0 Yangia sp. CCB-MM3 2150 1792508 2 1 genus 1831 Dinoroseobacter 0 309512 10 1 species 1821 Dinoroseobacter shibae 0 215813 1 3 genus Sulfitobacter 4376 0 60136 28 1402135 0 1945 Sulfitobacter pseudonitzschiae species 1 no rank 1 196795 0 2403 1 species Sulfitobacter sp. AM1-D1 2403 0 1917485 genus 1 2 12 191028 0 Leisingera 2218 species 1 0 Leisingera methylohalidivorans 2206 133924 1 2 genus 8 119541 1481 Rhodobaca 0 Rhodobaca barguzinensis 1473 0 441209 1 species 18 74032 1803 Antarctobacter 0 1 2 genus 1 species 74033 1785 Antarctobacter heliothermus 0 17 Loktanella 0 245186 1 genus 108358 Rickettsiales 0 145 766 1 56 order 1 no rank 1699067 7768 0 7768 Rickettsiales bacterium Ac37b 0 1528098 1 species family 3 1 0 3146 Candidatus Midichloriaceae 1328881 8 genus 1 2 411566 42 0 3138 Candidatus Midichloria 234827 0 Candidatus Midichloria mitochondrii 3096 species 1 43451 Rickettsiaceae 0 775 68 1 28 family 1 2 genus 3049 Candidatus Phycorickettsia 0 2115980 7 1 species 2115978 Candidatus Phycorickettsia trachydisci 3042 0 25 tribe 33988 40334 0 genus 2 1 0 6434 Orientia 3 69474 species 1 0 Orientia tsutsugamushi 6431 784 3155 780 0 Rickettsia 33900 genus 23 1 2 species group 7985 0 114292 Rickettsia prowazekii 4017 0 782 1 species 0 3968 Rickettsia typhi 785 species 1 0 6773 1129742 species group 2 species 1 33990 0 Rickettsia bellii 4173 1 species 788 Rickettsia canadensis 2600 0 species group 17 114277 0 12115 1 species 109232 1506 Rickettsia monacensis 0 1 species 35794 Rickettsia slovaca 117 0 787 Rickettsia australis 2255 0 1 species 47589 1121 Rickettsia peacockii 0 1 species 35788 0 Rickettsia africae 221 species 1 35792 184 Rickettsia parkeri 0 1 species 1 species Rickettsia massiliae 341 0 35791 Rickettsia akari 1484 0 786 1 species 42862 1951 Rickettsia felis 0 1 species species 1 0 Rickettsia montanensis 370 33991 1 species 35790 284 Rickettsia japonica 0 0 Rickettsia rickettsii 485 783 species 1 33992 0 441 Rickettsia rhipicephali species 1 781 Rickettsia conorii 272 0 1 species 600 Rickettsia amblyommatis 0 33989 1 species 0 Rickettsia heilongjiangensis 213 226665 species 1 1105106 270 Rickettsia philipii 0 1 species no rank 1 0 3872 114295 species 1 0 3872 Rickettsia endosymbiont of Bemisia tabaci 337479 1 23 family Anaplasmataceae 53848 0 131 942 1 6 genus 943 121 23933 Ehrlichia 0 1 no rank 4222 0 106181 391036 0 4222 Ehrlichia sp. HF species 1 species group 4 0 19590 106178 species 1 0 Ehrlichia chaffeensis 4413 945 779 5870 Ehrlichia ruminantium 0 1 species 944 0 5266 Ehrlichia canis species 1 1 species 4041 Ehrlichia muris 0 35795 4 1 genus 3903 Neorickettsia 0 30 33993 1 species 950 1386 Neorickettsia risticii 0 1 species 1211 Neorickettsia sennetsu 0 951 33994 0 1276 Neorickettsia helminthoeca species 1 19 768 0 Anaplasma 2258 genus 1 4 1 species 770 Anaplasma marginale 527 0 769 0 Anaplasma centrale 635 species 1 1077 0 106179 1 species group 1 species 1077 Anaplasma phagocytophilum 0 948 0 23623 952 tribe 8 1 8 genus 509 953 Wolbachia 23623 0 2640676 0 23114 no rank 7 77551 0 2718 Wolbachia endosymbiont of Onchocerca volvulus species 1 163164 2988 Wolbachia endosymbiont of Drosophila melanogaster 0 1 species species 1 0 2490 Wolbachia endosymbiont of Brugia malayi 80849 0 3120 Wolbachia sp. wRi 66084 species 1 77038 0 6478 Wolbachia endosymbiont of Drosophila simulans species 1 246273 0 Wolbachia endosymbiont of Cimex lectularius 2526 species 1 0 2794 Wolbachia endosymbiont of Onchocerca ochengi 100901 species 1 Magnetococcales 1091 0 7 1191478 1 4 order 1 3 family 4 1191479 1084 Magnetococcaceae 0 0 Magnetococcus 1080 162171 3 genus 2 1 species 1 1124597 0 Magnetococcus marinus 1077 9 1 order 54526 110 762176 Pelagibacterales 0 342 1655514 0 713818 Pelagibacteraceae family 6 1 Candidatus Pelagibacter 309462 0 93 198251 3 1 genus species 1 0 264235 Candidatus Pelagibacter ubique 198252 2647897 45134 0 1 no rank species 1 0 Candidatus Pelagibacter sp. IMCC9063 45134 1002672 1655516 404014 0 2 no rank 744985 0 47943 alpha proteobacterium HIMB59 species 1 1 species 859653 alpha proteobacterium HIMB5 356071 0 0 Candidatus Fonsibacter 48248 117 2045213 genus 2 1 species 1 0 Candidatus Fonsibacter ubiquis 48131 1925548 order 1 9 13 1921002 0 9954 Holosporales 3 1 family 2100208 13 Caedimonadaceae 3809 0 1509243 13 Candidatus Nucleicultrix 3796 0 1 2 genus 1509244 3783 Candidatus Nucleicultrix amoebiphila 0 1 species 2 1 family 8 44746 3478 Holosporaceae 0 1 no rank 3470 0 204454 1 species 86106 3470 endosymbiont of Acanthamoeba sp. UWC8 0 3 1 family 1777752 40 2654 Candidatus Paracaedibacteraceae 0 Candidatus Paracaedibacter 2614 0 51 1521255 2 1 genus 91604 0 2563 Candidatus Paracaedibacter acanthamoebae species 1 415 28216 Betaproteobacteria 318592 0 1 355 class 119066 20735 0 13 no rank 1 genus 189384 272 0 0 Candidatus Tremblaya princeps 272 189385 species 1 0 2733 Candidatus Profftella 1381133 6 genus 1 2 1 species 669502 2727 Candidatus Profftella armatura 0 1 6 genus 15992 Kinetoplastibacterium 0 65 33055 1 species 994695 Candidatus Kinetoplastibacterium galatii 2451 0 1 species Candidatus Kinetoplastibacterium crithidii 3565 0 33056 994692 4241 Candidatus Kinetoplastibacterium desouzaii 0 1 species 1 species Candidatus Kinetoplastibacterium oncopeltii 2810 0 994696 233181 Kinetoplastibacterium blastocrithidii 2860 0 1 species Candidatus Accumulibacter 938 0 10 327159 2 1 genus species 1 327160 0 Candidatus Accumulibacter phosphatis 928 Candidatus Nasuia 800 0 1 1301080 2 1 genus species 1 0 799 Candidatus Nasuia deltocephalinicola 1160784 order 22 1 0 12642 Rhodocyclales 165 206389 0 Azonexaceae 789 14 2008795 family 3 1 genus 1 2 73029 16 0 775 Dechloromonas species 1 0 Dechloromonas aromatica 759 259537 9409 Zoogloeaceae 0 186 2008794 12 1 family 4084 Azoarcus 0 93 12960 1 5 genus 1 species 2067960 Azoarcus sp. SY39 961 0 0 2128 2629479 no rank 2 0 Azoarcus sp. CIB 1005 198107 species 1 1 species 748247 1123 Azoarcus sp. KH32C 0 1 species 418699 Azoarcus olearius 902 0 33057 107 Thauera 5139 0 6 1 genus no rank 2 2609274 0 2338 85643 0 Thauera sp. MZ1T 1243 species 1 species 1 0 1095 Thauera sp. K11 2005884 59405 0 Thauera aromatica 825 species 1 species 1 1134435 0 Thauera humireducens 938 1 species Thauera chlorobenzoica 931 0 96773 6 1 family 29 75787 2279 Rhodocyclaceae 0 1 2 genus Aromatoleum 828 0 14 551759 551760 0 814 Aromatoleum aromaticum species 1 75788 0 678 no rank 1 1898103 678 Rhodocyclaceae bacterium 0 1 species Azospira 744 0 18 146937 2 1 genus 1 species 146939 726 Azospira oryzae 0 24177 Nitrosomonadales 0 191 32003 1 44 order 2772226 1201 0 4 family genus 1 2 12 935200 0 656 Sulfuricella Sulfuricella denitrificans 644 0 649841 1 species genus 2 1 0 Sulfuriferula 545 1778653 3 no rank 1 2637784 0 542 1985873 0 Sulfuriferula sp. AH1 542 species 1 1 12 family 26 206379 Nitrosomonadaceae 9920 0 genus 1 4 11 35798 0 1314 Nitrosospira species 1 35799 0 Nitrosospira briensis 379 1231 0 411 Nitrosospira multiformis species 1 0 Nitrosospira lacus 513 1288494 species 1 65 914 0 8580 Nitrosomonas genus 1 7 916 0 1209 Nitrosomonas eutropha species 1 1 species Nitrosomonas ureae 1426 0 44577 695 Nitrosomonas europaea 0 915 1 species 2609265 3271 0 2 no rank 0 1614 Nitrosomonas sp. AL212 153948 species 1 species 1 261292 0 1657 Nitrosomonas sp. Is79A3 1 species Nitrosomonas communis 1914 0 44574 1 5 family Gallionellaceae 1262 0 46 90627 96 5 0 570 Gallionella genus 1 2 species 1 0 Gallionella capsiferriformans 565 370405 genus 1 2 0 646 Sideroxydans 9 314343 0 637 Sideroxydans lithotrophicus 63745 species 1 2008790 22 0 Thiobacillaceae 719 family 3 1 2 1 genus 697 Thiobacillus 0 11 919 36861 686 Thiobacillus denitrificans 0 1 species 1 5 family 2008793 78 1657 Sterolibacteriaceae 0 2 1 genus Methyloversatilis 752 0 14 378210 2639971 738 0 1 no rank species 1 1842540 0 Methyloversatilis sp. RAC08 738 genus 2 1 0 827 Sulfuritalea 19 1054211 species 1 748811 0 808 Sulfuritalea hydrogenivorans family 14 1 32011 64 0 Methylophilaceae 9227 genus 1 2 0 Methylobacillus 554 1 404 405 0 553 Methylobacillus flagellatus species 1 genus 3 1 0 Methylotenera 2418 359407 12 1055487 0 Methylotenera versatilis 1535 species 1 871 Methylotenera mobilis 0 359408 1 species 12 1679002 0 Candidatus Methylopumilus 4524 genus 3 1 1162 Candidatus Methylopumilus turicensis 0 1581680 1 species 0 3350 Candidatus Methylopumilus planktonicus 1581557 species 1 4 16 0 Methylophilus 706 genus 2 1 1 no rank 2630143 702 0 1 species 1662285 702 Methylophilus sp. TWE2 0 28 81682 0 Methylovorus 961 genus 3 1 1 species 456 Methylovorus glucosotrophus 0 266009 no rank 1 0 477 2634027 0 Methylovorus sp. MP688 477 887061 species 1 order 1 236 0 Burkholderiales 238269 80840 2043 536 80864 43243 Comamonadaceae 0 59 1 family 0 Acidovorax 6193 12916 218 genus 1 9 80867 0 972 Acidovorax avenae species 1 2684926 2890 0 4 no rank 1 species 695 Acidovorax sp. RAC01 0 1842533 232721 0 659 Acidovorax sp. JS42 species 1 1 species 358220 Acidovorax sp. KKS102 655 0 species 1 1858609 0 881 Acidovorax sp. T1 0 697 Acidovorax ebreus 721785 species 1 1 species 553814 Acidovorax sp. NA3 512 0 80869 Acidovorax citrulli 904 0 1 species 2 genus 1297 0 2490452 1 species Comamonadaceae bacterium B1 606 0 1458426 0 691 Comamonadaceae bacterium A1 1458425 species 1 3 1436289 0 Candidatus Symbiobacter 419 genus 1 2 species 1 0 Candidatus Symbiobacter mobilis 416 1436290 Hydrogenophaga 2603 0 19 47420 1 4 genus no rank 2 2610897 0 1867 1 species 1842537 758 Hydrogenophaga sp. RAC07 0 1 species 795665 Hydrogenophaga sp. PBC 1109 0 0 717 Hydrogenophaga crassostreae 1763535 species 1 17 174951 Ramlibacter 2023 0 2 1 genus Ramlibacter tataouinensis 2006 0 94132 1 species genus 3 1 0 Limnohabitans 1112 665874 9 no rank 2 2626134 0 1103 0 512 Limnohabitans sp. 103DPR2 1678129 species 1 591 Limnohabitans sp. 63ED37-2 0 1678128 1 species genus 1 2 6 201096 0 1052 Alicycliphilus 1046 Alicycliphilus denitrificans 0 179636 1 species 16 1649468 Melaminivora 802 0 2 1 genus 2641902 786 0 1 no rank 1 species 2109913 786 Melaminivora sp. SC2-9 0 1 2 genus 684 Diaphorobacter 0 238749 3 681 Diaphorobacter polyhydroxybutyrativorans 0 1546149 1 species 0 2506 Polaromonas 52972 19 genus 1 3 1 no rank 2638319 1535 0 Polaromonas sp. JS666 1535 0 296591 1 species 216465 0 952 Polaromonas naphthalenivorans species 1 Simplicispira 592 0 352450 10 2 1 genus species 1 2109915 0 582 Simplicispira sp. SC1-8 genus 4 1 0 3475 Comamonas 283 35 1 species 831 Comamonas kerstersii 0 225992 1088 Comamonas serinivorans 0 1082851 1 species Comamonas testosteroni 1521 0 285 1 species 2678886 662 0 1 genus 1 species 2116657 Melaminivora sp. SC2-7 662 0 genus 1 5 80865 135 0 Delftia 4771 species 1 80866 0 1077 Delftia acidovorans 2613839 2436 0 2 no rank 1920191 1141 Delftia sp. HK171 0 1 species 1 species 742013 1295 Delftia sp. Cs1-4 0 180282 1123 Delftia tsuruhatensis 0 1 species 34072 129 9059 Variovorax 0 1 5 genus 2 no rank 663243 2922 0 species 1 2126319 0 1508 Variovorax sp. PMC12 species 1 1795631 0 Variovorax sp. PAMC 28711 1414 species 1 34073 0 4537 Variovorax paradoxus Variovorax boronicumulans 1471 0 436515 1 species 2955 Rhodoferax 0 19 28065 1 5 genus 0 683 Rhodoferax ferrireducens 192843 species 1 81479 0 Rhodoferax antarcticus 641 species 1 1842727 1080 Rhodoferax koreense 0 1 species 1 species 532 Rhodoferax saidenbachensis 0 1484693 genus 2 1 0 Verminephrobacter 1185 4 364316 1 species Verminephrobacter eiseniae 1181 0 364317 0 Ottowia 1317 22 219181 genus 3 1 1 species 2109914 739 Ottowia sp. KADR8-3 0 1 no rank 2645081 556 0 species 1 1658672 0 556 Ottowia sp. oral taxon 894 1 84 family Burkholderiaceae 119561 0 119060 535 genus 1 0 1045 1827195 Burkholderia sp. RPE64 1045 0 758793 1 species genus 12 1 219 1822464 0 13419 Paraburkholderia 1 species 36873 1253 Paraburkholderia xenovorans 0 1 species 948 Paraburkholderia phenoliruptrix 0 252970 species 1 0 1005 Paraburkholderia terrae 311230 species 1 0 1330 Paraburkholderia phytofirmans 261302 2615204 1185 0 1 no rank 1926494 0 1185 Paraburkholderia sp. SOS3 species 1 species 1 0 Paraburkholderia phymatum 1077 148447 948107 0 1037 Paraburkholderia sprentiae species 1 134537 983 Paraburkholderia fungorum 0 1 species species 1 169430 0 Paraburkholderia hospita 1133 1170 Paraburkholderia aromaticivorans 0 2026199 1 species 1 species Paraburkholderia caribensis 2079 0 75105 0 13165 Cupriavidus 106589 270 genus 9 1 species 1 0 Cupriavidus gilardii 1122 82541 106590 1779 Cupriavidus necator 0 1 species species 1 0 1727 Cupriavidus basilensis 68895 1 species 248026 1026 Cupriavidus pinatubonensis 0 2640874 0 3556 no rank 2 Cupriavidus sp. USMAA2-4 1882 0 876364 1 species species 1 0 1674 Cupriavidus sp. USMAHM13 1389192 species 1 367825 0 Cupriavidus sp. USMAA1020 1727 119219 1958 Cupriavidus metallidurans 0 1 species genus 1 41 2396 32008 0 Burkholderia 69711 87882 0 32741 species group 19 species 1 0 Burkholderia ambifaria 1708 152480 1503054 Burkholderia stagnalis 1033 0 1 species species 1 0 2669 Burkholderia lata 482957 95485 Burkholderia stabilis 1757 0 1 species 1 species 1207504 Burkholderia pseudomultivorans 990 0 1503055 0 Burkholderia territorii 728 species 1 species 1 0 5309 Burkholderia cepacia 292 0 Burkholderia ubonensis 3058 101571 species 1 species 1 488729 0 797 Burkholderia metallica 60550 780 Burkholderia pyrrocinia 0 1 species 87883 Burkholderia multivorans 2227 0 1 species 1 species 265293 923 [Pseudomonas] mesoacidophila 0 species 1 0 Burkholderia latens 927 488446 0 968 Burkholderia contaminans 488447 species 1 species 1 0 Burkholderia seminalis 914 488731 1 species 60552 1814 Burkholderia vietnamiensis 0 152500 856 Burkholderia dolosa 0 1 species 753 Burkholderia diffusa 0 488732 1 species 95486 Burkholderia cenocepacia 4530 0 1 species 0 Burkholderia glumae 2410 337 species 1 1 species 28095 Burkholderia gladioli 2474 0 0 9736 2613784 no rank 11 species 1 640512 0 Burkholderia sp. CCGE1003 951 1 species 1468409 891 Burkholderia sp. 2002721687 0 581 Burkholderia sp. PAMC 26561 0 1795043 1 species 1 species 416344 701 Burkholderia sp. KJ006 0 species 1 0 Burkholderia sp. YI23 1241 1097668 species 1 0 617 Burkholderia sp. PAMC 28687 1795874 1678678 948 Burkholderia sp. HB1 0 1 species 1 species Burkholderia sp. Bp5365 871 0 1740162 1740163 0 712 Burkholderia sp. Bp7605 species 1 1033 Burkholderia sp. CCGE1001 0 640510 1 species 1 species 758796 Burkholderia sp. RPE67 1190 0 species 1 0 Burkholderia plantarii 1391 41899 species group 7 0 18563 111527 1 species Burkholderia oklahomensis 1492 0 342113 57975 Burkholderia thailandensis 2600 0 1 species species 1 0 9085 Burkholderia pseudomallei 28450 1357 Burkholderia sp. MSMB0852 0 1637841 1 species 1191 Burkholderia sp. MSMB617WGS 0 1637831 1 species species 1 0 Burkholderia mallei 1741 13373 1637837 Burkholderia sp. MSMB0266 1097 0 1 species 4 1 genus 4591 Polynucleobacter 0 63 44013 576610 1113 Polynucleobacter necessarius 0 1 species 0 Polynucleobacter asymbioticus 2135 576611 species 1 1835254 1280 Polynucleobacter duraquae 0 1 species 5 1 genus 107 48736 8011 Ralstonia 0 1200 Ralstonia mannitolilytica 0 105219 1 species 1 species 3950 Ralstonia solanacearum 0 305 0 Ralstonia pickettii 1698 329 species 1 species 1 0 Ralstonia insidiosa 1056 190721 10 1 genus 147 93217 8570 Pandoraea 0 93219 0 Pandoraea norimbergensis 1080 species 1 species 1 0 1213 Pandoraea pnomenusa 93220 species 1 0 Pandoraea apista 747 93218 93221 1864 Pandoraea pulmonicola 0 1 species 1 species 624 Pandoraea sputorum 0 93222 1 species 573737 Pandoraea oxalativorans 822 0 656179 617 Pandoraea faecigallinarum 0 1 species 445709 762 Pandoraea thiooxydans 0 1 species 656178 694 Pandoraea vervacti 0 1 species 1 genus 2571159 514 0 Paraburkholderia rhizoxinica 514 0 412963 1 species 224 506 Alcaligenaceae 38196 0 44 1 family 7 359336 0 687 Castellaniella genus 1 2 species 1 0 Castellaniella defragrans 680 75697 4467 Taylorella 0 5 29574 1 3 genus 84590 Taylorella asinigenitalis 2162 0 1 species species 1 0 2300 Taylorella equigenitalis 29575 8 305976 0 677 Pusillimonas genus 2 1 1 no rank 2640016 669 0 1007105 0 669 Pusillimonas sp. T7-7 species 1 2113 Alcaligenes 0 507 17 2 1 genus species 1 0 2096 Alcaligenes faecalis 511 genus 3 1 18 290425 0 1511 Advenella 0 674 Advenella kashmirensis 310575 species 1 1 species Advenella mimigardefordensis 819 0 302406 9675 Achromobacter 0 269 222 6 1 genus 1 no rank 1021 0 2626865 species 1 0 Achromobacter sp. AONIH1 1021 1758194 species 1 0 1642 Achromobacter spanius 217203 1 species 85698 3772 Achromobacter xylosoxidans 0 species 1 0 Achromobacter denitrificans 2094 32002 species 1 0 877 Achromobacter insolitus 217204 17 1 genus 517 429 Bordetella 14543 0 0 Bordetella genomosp. 6 1217 463024 species 1 520 0 Bordetella pertussis 1022 species 1 1 species Bordetella genomosp. 9 637 0 1416803 0 Bordetella petrii 791 94624 species 1 Bordetella hinzii 826 0 103855 1 species 518 2119 Bordetella bronchiseptica 0 1 species species 1 0 836 Bordetella genomosp. 13 463040 1 species 35814 483 Bordetella holmesii 0 463014 Bordetella flabilis 760 0 1 species 1331258 0 723 Bordetella pseudohinzii species 1 2630031 702 0 1 no rank Bordetella sp. H567 702 0 1697043 1 species 463025 0 912 Bordetella bronchialis species 1 699 Bordetella trematum 0 123899 1 species Bordetella avium 438 0 521 1 species Bordetella parapertussis 1094 0 519 1 species species 1 1416806 0 855 Bordetella genomosp. 8 1 2 genus 12 90243 Oligella 1031 0 1 species 90245 Oligella urethralis 1019 0 0 Paenalcaligenes 1128 1100891 15 genus 1 2 0 Paenalcaligenes hominis 1113 643674 species 1 0 787 Orrella 10 1921582 genus 1 2 1 species Orrella dioscoreae 777 0 1851544 2 1 genus 4 1472344 Basilea 1353 0 1 species 1472345 Basilea psittacipulmonis 1349 0 no rank 2 80841 0 1651 1 species 1834205 910 Burkholderiales bacterium YL45 0 1 species 741 Burkholderiales bacterium GJ-E10 0 1469502 120 75682 0 Oxalobacteraceae 22114 family 29 1 Herminiimonas 1336 0 5 303379 3 1 genus species 1 0 Herminiimonas arsenicoxydans 664 204773 1809410 Herminiimonas arsenitoxidans 667 0 1 species genus 1 2 1 846 0 541 Oxalobacter 847 540 Oxalobacter formigenes 0 1 species 202907 79 0 Collimonas 3566 genus 1 4 species 1 0 Collimonas pratensis 973 279113 279058 0 Collimonas arenae 1430 species 1 1084 Collimonas fungivorans 0 158899 1 species genus 6 1 192 149698 0 5802 Massilia Massilia sp. B2 1131 0 2045208 1 species species 1 2072590 0 1110 Massilia sp. ZMN-3 2 no rank 2609279 2143 0 0 1190 Massilia sp. WG5 1707785 species 1 species 1 1678028 0 953 Massilia sp. NR 4-1 1141883 1226 Massilia putida 0 1 species 0 5165 Herbaspirillum 963 94 genus 1 6 species 1 964 0 1095 Herbaspirillum seropedicae 341045 Herbaspirillum hiltneri 1353 0 1 species 2624150 849 0 1 no rank 2025949 0 849 Herbaspirillum sp. meg3 species 1 92645 1084 Herbaspirillum frisingense 0 1 species 80842 0 690 Herbaspirillum rubrisubalbicans species 1 122 29580 5584 Janthinobacterium 0 1 7 genus species 1 368607 0 1005 Janthinobacterium svalbardensis species 1 0 867 Janthinobacterium agaricidamnosum 55508 4 no rank 3590 0 2610881 1 species 1236179 Janthinobacterium sp. B9-8 993 0 species 1 0 645 Janthinobacterium sp. Marseille 375286 1 species Janthinobacterium sp. 1_2014MBL_MicDiv 1065 0 1644131 1938606 0 887 Janthinobacterium sp. LM6 species 1 224471 0 11461 no rank 17 genus 2 1 93681 19 0 1275 Roseateles 76731 0 Roseateles depolymerans 1256 species 1 0 Methylibium 1041 38 316612 genus 1 2 1 species 1003 Methylibium petroleiphilum 0 105560 0 798 Paucibacter 13 318147 genus 2 1 785 0 2642959 1 no rank Paucibacter sp. KCTC 42545 785 0 1768242 1 species 1 2 genus 1174 Thiomonas 0 30 32012 species 1 926 0 1144 Thiomonas intermedia 413882 [Polyangium] brachysporum 1689 0 1 species 46 28067 1595 Rubrivivax 0 1 2 genus species 1 0 Rubrivivax gelatinosus 1549 28068 Mitsuaria 1402 0 14 65047 1 2 genus 1 no rank 1388 0 2648776 species 1 0 Mitsuaria sp. 7 1388 1658665 44 212743 0 Rhizobacter 1349 genus 1 2 0 1305 Rhizobacter gummiphilus 946333 species 1 2 1 genus 1138 Leptothrix 0 30 88 species 1 34029 0 1108 Leptothrix cholodnii 37 1 order 240 206351 Neisseriales 20039 0 Neisseriaceae 13302 0 81 481 1 23 family 6311 Neisseria 0 160 482 12 1 genus 0 313 Neisseria sicca 490 species 1 2 no rank 836 0 2623750 1853276 0 Neisseria sp. 10022 407 species 1 655307 0 429 Neisseria sp. KEM232 species 1 species 1 0 Neisseria zoodegmatis 588 326523 486 0 553 Neisseria lactamica species 1 species 1 0 440 Neisseria elongata 495 1 species 1853278 Neisseria sp. 10023 387 0 28091 0 Neisseria weaveri 680 species 1 1 species 347 Neisseria mucosa 0 488 species 1 487 0 Neisseria meningitidis 1563 species 1 485 0 444 Neisseria gonorrhoeae genus 2 1 8 538 0 Eikenella 508 0 Eikenella corrodens 500 539 species 1 no rank 1 0 2454 421605 species 1 0 Neisseriaceae bacterium DSM 100970 2454 2052837 Vitreoscilla 1661 0 59 17 3 1 genus 1 species 63 Vitreoscilla filiformis 546 0 no rank 1 2627922 0 1098 species 1 96942 0 1098 Vitreoscilla sp. C1 0 1284 Snodgrassella 3 1193515 genus 2 1 species 1 1196083 0 Snodgrassella alvi 1281 1 2 genus Simonsiella 1003 0 3 71 1 species Simonsiella muelleri 1000 0 72 1499392 125 6497 Chromobacteriaceae 0 1 13 family genus 1 2 0 568 Aquaspirillum 187 13 1 no rank 555 0 2620219 species 1 1938604 0 555 Aquaspirillum sp. LM1 2 1 genus 697 Laribacter 0 26 168470 0 671 Laribacter hongkongensis 168471 species 1 4 no rank 3409 0 90153 80 535 Chromobacterium 3409 0 1 4 genus species 1 536 0 965 Chromobacterium violaceum 0 1252 Chromobacterium vaccinii 1108595 species 1 no rank 1 2641838 0 1112 1 species Chromobacterium sp. ATCC 53434 1112 0 2059672 1 2 genus 20 568394 829 Pseudogulbenkiania 0 809 0 2642558 1 no rank species 1 748280 0 Pseudogulbenkiania sp. NH8B 809 19 885864 0 869 Jeongeupia genus 1 2 850 0 2619593 1 no rank 0 850 Jeongeupia sp. USM3 1906741 species 1 0 2315 33809 no rank 2 1 species beta proteobacterium CB 1330 0 543913 1 species 1904640 Betaproteobacteria bacterium GR16-43 985 0 0 1286122 Gammaproteobacteria 2212 1236 class 1 911 19 135618 0 7995 Methylococcales order 1 13 Methylococcaceae 7976 0 61 403 1 12 family 0 Methylomicrobium 1563 12 39773 genus 2 1 271065 1551 Methylomicrobium alcaliphilum 0 1 species 1 2 genus 814 Methylovulum 0 5 762296 1704499 0 809 Methylovulum psychrotolerans species 1 613 Methylococcus 0 7 413 1 2 genus 0 Methylococcus capsulatus 606 414 species 1 199 416 0 4925 Methylomonas genus 5 1 0 Methylomonas denitrificans 1543 1538553 species 1 1 species Methylomonas methanica 1002 0 421 Methylomonas koyamae 1040 0 702114 1 species 2608980 0 1141 no rank 1 species 1 1727196 0 1141 Methylomonas sp. DH-1 Xanthomonadales 57683 0 135614 335 54 1 order 32033 516 0 49967 Xanthomonadaceae family 39 1 genus 1 17 0 22176 Xanthomonas 697 338 1049 Xanthomonas sacchari 0 56458 1 species 347 4342 Xanthomonas oryzae 0 1 species species 1 0 500 Xanthomonas albilineans 29447 species 1 53413 0 Xanthomonas axonopodis 493 0 Xanthomonas alfalfae 537 366650 species 1 1985254 521 Xanthomonas phaseoli 0 1 species 442694 0 661 Xanthomonas perforans species 1 species 1 343 0 Xanthomonas translucens 1780 56460 0 1107 Xanthomonas vesicatoria species 1 1 species Xanthomonas campestris 3032 0 339 643453 0 4547 species group 2 species 1 366648 0 918 Xanthomonas fuscans 1 species 3629 Xanthomonas citri 0 346 1 species 604 Xanthomonas euvesicatoria 0 456327 56454 0 Xanthomonas hortorum 774 species 1 0 Xanthomonas fragariae 1064 48664 species 1 species 1 56459 0 Xanthomonas vasicola 468 genus 2 1 9 83614 0 831 Luteimonas 0 Luteimonas sp. 100111 822 2006110 species 1 9 1 genus 13672 Stenotrophomonas 0 40323 307 1 species group 6846 0 995085 40324 6846 Stenotrophomonas maltophilia 0 1 species species 1 128780 0 1353 Stenotrophomonas acidaminiphila no rank 4 196198 0 3762 1 species 1827305 1222 Stenotrophomonas sp. MYb57 0 1 species 1904944 656 Stenotrophomonas sp. LM091 0 species 1 0 Stenotrophomonas sp. KCTC 12332 730 1793721 1 species Stenotrophomonas sp. WZN-1 1154 0 2005046 species 1 0 717 Stenotrophomonas rhizophila 216778 83617 0 687 Stenotrophomonas nitritireducens species 1 96 68 0 Lysobacter 7476 genus 5 1 0 1332 Lysobacter gummosus 262324 species 1 1 species 69 Lysobacter enzymogenes 1336 0 435897 2196 Lysobacter capsici 0 1 species 2516 Lysobacter antibioticus 0 84531 1 species genus 1 2 2370 4 0 Xylella 2759 2371 0 Xylella fastidiosa 2755 species 1 genus 1 3 64 83618 0 2537 Pseudoxanthomonas species 1 314722 0 Pseudoxanthomonas suwonensis 1723 1 species Pseudoxanthomonas spadix 750 0 415229 0 Rhodanobacteraceae 7381 1775411 89 family 1 14 2 1 genus 16 70411 659 Frateuria 0 1 species 81475 643 Frateuria aurantia 0 0 2624 Dyella 86 231454 genus 1 4 231455 Dyella japonica 846 0 1 species species 1 0 928 Dyella thiooxydans 445710 species 1 0 764 Dyella jiangningensis 1379159 genus 2 1 242605 14 0 813 Luteibacter 0 799 Luteibacter rhizovicinus 242606 species 1 genus 2 1 16 323413 0 1355 Dokdonella 323415 1339 Dokdonella koreensis 0 1 species 2 1 genus 25 75309 1158 Rhodanobacter 0 0 Rhodanobacter denitrificans 1133 666685 species 1 1 genus 2233801 683 0 0 Xanthomonadales bacterium D13 683 2021234 species 1 135622 428 0 218532 Alteromonadales order 106 1 17 267891 3001 Moritellaceae 0 3 1 family 1 2 genus 10 58050 Moritella 2984 0 80854 0 Moritella viscosa 2974 species 1 1 25 family Shewanellaceae 30824 0 50 267890 24 1 genus 474 22 30774 Shewanella 0 Shewanella oneidensis 775 0 70863 1 species 1164 Shewanella pealeana 0 70864 1 species 1 species 192073 1372 Shewanella denitrificans 0 1868 Shewanella halifaxensis 0 271098 1 species 1 species 225848 1586 Shewanella psychrophila 0 6057 0 196818 6 no rank species 1 2059264 0 Shewanella sp. Pdp11 1131 species 1 351745 0 Shewanella sp. W3-18-1 1497 Shewanella sp. MR-4 800 0 60480 1 species 1 species 855 Shewanella sp. ANA-3 0 94122 species 1 2029986 0 Shewanella sp. WE21 996 species 1 60481 0 778 Shewanella sp. MR-7 0 Shewanella amazonensis 660 60478 species 1 species 1 271097 0 Shewanella sediminis 1349 1 species 1584 Shewanella putrefaciens 0 24 species 1 56812 0 2009 Shewanella frigidimarina 404011 1544 Shewanella piezotolerans 0 1 species species 1 60217 0 Shewanella violacea 1541 797 Shewanella bicestrii 0 2018305 1 species 1 species Shewanella loihica 571 0 359303 260364 Shewanella marisflavi 673 0 1 species 60961 1608 Shewanella woodyi 0 1 species Shewanella baltica 3020 0 62322 1 species 0 2122 Shewanella japonica 93973 species 1 family 3 1 4 267892 0 737 Ferrimonadaceae genus 2 1 0 733 Ferrimonas 15 44011 species 1 44012 0 Ferrimonas balearica 718 family 1 30 72275 146 0 51330 Alteromonadaceae 5 1751872 1217 Lacimicrobium 0 2 1 genus species 1 0 Lacimicrobium alkaliphilum 1212 1526571 4067 Glaciecola 0 30 89404 3 1 genus 300231 1991 Glaciecola nitratireducens 0 1 species 1 no rank 2046 0 2618684 1 species 983545 2046 Glaciecola sp. 4H-3-7+YE-5 0 genus 1 2 6 261825 0 1430 Agarivorans species 1 680279 0 1424 Agarivorans gilvus genus 1 10 309 2742 0 11855 Marinobacter 1 species Marinobacter hydrocarbonoclasticus 1533 0 2743 species 1 0 Marinobacter salarius 1296 1420917 0 4662 83889 no rank 3 1 species 1671721 2176 Marinobacter sp. CP1 0 1 species 490759 Marinobacter sp. BSs20148 1039 0 species 1 1749259 0 Marinobacter sp. LQ44 1447 1033846 Marinobacter adhaerens 1489 0 1 species 1 species 1874317 850 Marinobacter salinus 0 330734 0 Marinobacter psychrophilus 905 species 1 1 species 811 Marinobacter similis 0 1420916 339 226 Alteromonas 29405 0 10 1 genus 1 species 28108 12739 Alteromonas macleodii 0 1 species 2096 Alteromonas stellipolaris 0 233316 species 1 715451 0 2303 Alteromonas naphthalenivorans 1 species 1663 Alteromonas addita 0 287094 0 Alteromonas mediterranea 3531 314275 species 1 no rank 3 0 4785 2614992 species 1 0 1435 Alteromonas sp. Mac1 1777491 species 1 2058133 0 Alteromonas sp. MB-3u-76 1599 species 1 0 Alteromonas sp. RW2A1 1751 1917158 species 1 589873 0 1949 Alteromonas australica 18 1621534 0 3210 Paraglaciecola genus 2 1 0 3192 Paraglaciecola psychrophila 326544 species 1 4 1 family 4981 Psychromonadaceae 0 267894 11 67572 26 0 4970 Psychromonas genus 3 1 no rank 1 2614957 0 2155 314282 2155 Psychromonas sp. CNPT3 0 1 species 1 species 357794 2789 Psychromonas ingrahamii 0 9 1 family 55 267889 20160 Colwelliaceae 0 118 28228 0 17150 Colwellia genus 1 6 1 species 1967665 3582 Colwellia beringensis 0 1 species 28229 Colwellia psychrerythraea 3556 0 196834 9894 0 3 no rank Colwellia sp. PAMC 20917 3355 0 1816218 1 species species 1 0 Colwellia sp. MT41 2769 58049 1816219 0 Colwellia sp. PAMC 21821 3770 species 1 15 1518149 2955 Thalassotalea 0 1 2 genus 1 species 1763536 Thalassotalea crassostreae 2940 0 0 Pseudoalteromonadaceae 103179 267888 62 family 25 1 genus 1 24 0 Pseudoalteromonas 103117 1099 53246 2453 Pseudoalteromonas aliena 0 247523 1 species 1 species 394751 2318 Pseudoalteromonas arctica 0 species 1 0 1967 Pseudoalteromonas translucida 166935 species 1 0 2028 Pseudoalteromonas nigrifaciens 28109 Pseudoalteromonas atlantica 3461 0 288 1 species 1 species 2258 Pseudoalteromonas luteoviolacea 0 43657 2050 Pseudoalteromonas agarivorans 0 176102 1 species species 1 0 1833 Pseudoalteromonas marina 267375 1 species Pseudoalteromonas haloplanktis 2017 0 228 43658 0 1226 Pseudoalteromonas rubra species 1 Pseudoalteromonas tunicata 2895 0 314281 1 species 1348114 0 4565 Pseudoalteromonas piratica species 1 0 Pseudoalteromonas espejiana 1903 28107 species 1 species 1 161398 0 2721 Pseudoalteromonas phenolica species 1 43659 0 Pseudoalteromonas tetraodonis 1792 species 1 0 Pseudoalteromonas issachenkonii 1977 152297 5 no rank 194690 12583 0 1 species 1720343 2596 Pseudoalteromonas sp. 1_2015MBL_MicDiv 0 species 1 234831 0 1900 Pseudoalteromonas sp. SM9913 283699 Pseudoalteromonas sp. Bsw20308 2295 0 1 species species 1 1514074 0 Pseudoalteromonas sp. NC201 3739 1 species 1761891 2053 Pseudoalteromonas sp. 13-15 0 1 species 298657 Pseudoalteromonas spongiae 50546 0 species 1 0 1425 Pseudoalteromonas piscicida 43662 family 6 1 267893 9 0 Idiomarinaceae 3892 genus 1 5 0 3883 Idiomarina 58 135575 species 1 0 1046 Idiomarina loihiensis 135577 species 1 0 1041 Idiomarina piscisalsi 1096243 2614829 0 1738 no rank 2 2055892 Idiomarina sp. X4 981 0 1 species 0 Idiomarina sp. OT37-5b 757 2100422 species 1 95790 Thiotrichales 0 72273 73 36 1 order family 1 5 0 5679 Thiotrichaceae 135617 62 2570 Thioploca 0 6 40751 2 1 genus 40754 0 Thioploca ingrica 2564 species 1 12 1021 3047 Beggiatoa 0 1 2 genus species 1 0 Beggiatoa leptomitoformis 3035 288004 family 1 15 115 135616 0 Piscirickettsiaceae 27349 190 34067 0 Cycloclasticus 16194 genus 1 4 no rank 2 0 12243 2621467 1 species 5847 Cycloclasticus sp. P1 0 385025 species 1 0 Cycloclasticus sp. PY97N 6396 728003 1329899 Cycloclasticus zancles 3761 0 1 species 46 40222 Methylophaga 4051 0 3 1 genus 1 species 754477 Methylophaga frappieri 2059 0 0 Methylophaga nitratireducenticrescens 1946 754476 species 1 genus 1 2 0 Hydrogenovibrio 1486 9 28884 1 species Hydrogenovibrio crunogenus 1477 0 39765 0 Thiomicrospira 2417 933 20 genus 1 3 147268 1125 Thiomicrospira cyclica 0 1 species 0 Thiomicrospira aerophila 1272 92245 species 1 1237 15 0 3086 Piscirickettsia genus 2 1 1 species 3071 Piscirickettsia salmonis 0 1238 family 1 15 0 Francisellaceae 62689 85 34064 717 262 Francisella 58754 0 12 1 genus 573569 3365 Francisella sp. TX077308 0 1 species 657445 5609 Francisella noatunensis 0 1 species 2 no rank 7586 0 2610885 475375 3420 Francisella sp. MA067296 0 1 species species 1 1547445 0 Francisella sp. FSC1006 4166 Francisella persica 3050 0 954 1 species Francisella halioticida 6385 0 549298 1 species 263 Francisella tularensis 10342 0 1 species 4689 Francisella sp. CA97-1460 0 1542390 1 species 1 species Francisella philomiragia 8645 0 28110 species 1 0 3590 Francisella hispaniensis 622488 573570 Francisella sp. TX077310 4776 0 1 species Allofrancisella 3850 0 6 1869285 2 1 genus 1 species 594679 Allofrancisella guangzhouensis 3844 0 732 91347 248748 Enterobacterales 0 1 251 order 878 0 451511 2 no rank 13 702 0 Plesiomonas 878 genus 1 2 703 0 865 Plesiomonas shigelloides species 1 22 1 family 25443 Morganellaceae 0 123 1903414 23 637 0 3476 Arsenophonus genus 1 2 1 species 634113 3453 Arsenophonus symbiont of Lipoptena fortisetosa 0 genus 1 4 0 Photorhabdus 4293 36 29487 1 species 574560 1215 Photorhabdus temperata 0 29488 0 1327 Photorhabdus luminescens species 1 0 Photorhabdus asymbiotica 1715 291112 species 1 3 1 genus 583 21 Proteus 6169 0 585 0 Proteus vulgaris 2437 species 1 584 0 3711 Proteus mirabilis species 1 26 586 0 5037 Providencia genus 1 4 1 species Providencia alcalifaciens 1133 0 126385 587 1754 Providencia rettgeri 0 1 species 1 species 588 2124 Providencia stuartii 0 Xenorhabdus 5387 0 60 626 6 1 genus species 1 40576 0 1456 Xenorhabdus bovienii 1 species 40577 Xenorhabdus poinarii 885 0 species 1 0 890 Xenorhabdus doucetiae 351671 351679 Xenorhabdus hominickii 1095 0 1 species 628 1001 Xenorhabdus nematophila 0 1 species 2 581 Morganella 958 0 1 2 genus 0 Morganella morganii 956 582 species 1 Enterobacteriaceae 104105 0 756 543 122 1 family 1 4 genus 20 1330545 1681 Lelliottia 0 species 1 0 901 Lelliottia amnigena 61646 1 species 69220 396 Lelliottia nimipressuralis 0 species 1 1907578 0 Lelliottia jeotgali 364 1 10 genus Klebsiella 13347 0 257 570 0 2014 Klebsiella oxytoca 571 species 1 no rank 2 0 846 2608929 1905288 0 Klebsiella sp. LTGPAF-6F 465 species 1 1934254 0 Klebsiella sp. M5al 381 species 1 244366 0 Klebsiella variicola 1039 species 1 species 1 573 0 5096 Klebsiella pneumoniae 1 species 1463165 622 Klebsiella quasipneumoniae 0 0 Klebsiella quasivariicola 461 2026240 species 1 species 1 0 1784 Klebsiella aerogenes 548 1134687 Klebsiella michiganensis 1228 0 1 species genus 22 1 0 Enterobacter 11333 467 547 12 species group 354276 8137 0 1 species 305 Enterobacter ludwigii 0 299767 0 867 Enterobacter asburiae 61645 species 1 550 0 Enterobacter cloacae 3525 species 1 0 Enterobacter cancerogenus 294 69218 species 1 261 Enterobacter kobei 0 208224 1 species no rank 3 2757714 0 751 1 species 334 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 2077137 208 Enterobacter cloacae complex bacterium 0 2027919 1 species 209 Enterobacter cloacae complex sp. ECNIH7 0 1915310 1 species Enterobacter hormaechei 1892 0 1237 158836 1 3 species Enterobacter cloacae complex 'Hoffmann cluster III' 392 0 1812934 1 subspecies subspecies 1 1296536 0 263 Enterobacter xiangfangensis species 1 0 242 Enterobacter cloacae complex 'Hoffmann cluster IV' 1812935 9 no rank 2729 0 2608935 species 1 1827481 0 247 Enterobacter sp. ODB01 species 1 1166130 0 452 Enterobacter sp. R4-368 1977566 239 Enterobacter sp. Crenshaw 0 1 species Enterobacter sp. E20 233 0 1560339 1 species species 1 0 388 Enterobacter sp. SA187 1914861 0 Enterobacter sp. FY-07 364 1692238 species 1 species 1 0 359 Enterobacter sp. 638 399742 1868135 0 175 Enterobacter sp. HK169 species 1 species 1 2051905 0 Enterobacter sp. CRENT-193 272 13 160674 1727 Raoultella 0 3 1 genus 54291 0 Raoultella ornithinolytica 1256 species 1 species 1 0 458 Raoultella planticola 575 genus 2 1 18 409304 0 3087 Candidatus Ishikawaella Candidatus Ishikawaella capsulata 3069 0 168169 1 species 579 556 0 1 genus species 1 0 556 Kluyvera intermedia 61648 1 2 genus 353 Shimwellia 0 1335483 1 1 species 563 352 Shimwellia blattae 0 1330547 32 Kosakonia 2186 0 1 5 genus 1158459 0 Kosakonia sacchari 516 species 1 species 1 283686 0 Kosakonia radicincitans 676 208223 Kosakonia cowanii 407 0 1 species 497725 Kosakonia oryzae 555 0 1 species genus 1 5 56 561 0 Escherichia 11062 1499973 0 Escherichia marmotae 396 species 1 0 Escherichia fergusonii 307 564 species 1 9357 Escherichia coli 0 562 1 species 208962 0 Escherichia albertii 946 species 1 genus 1 14 0 9092 Citrobacter 544 278 1 species 35703 Citrobacter amalonaticus 1109 0 7 species group 4909 0 1344959 species 1 57706 0 Citrobacter braakii 708 species 1 2077148 0 385 Citrobacter freundii complex sp. CFNIH4 67827 Citrobacter werkmanii 727 0 1 species 1 species 2077147 366 Citrobacter freundii complex sp. CFNIH3 0 species 1 2077149 0 366 Citrobacter freundii complex sp. CFNIH9 0 Citrobacter freundii 2074 546 species 1 2066049 283 Citrobacter freundii complex sp. CFNIH2 0 1 species species 1 0 Citrobacter farmeri 1007 67824 2644389 795 0 2 no rank 0 461 Citrobacter sp. CFNIH10 1920110 species 1 1702170 0 Citrobacter sp. FDAARGOS_156 334 species 1 67825 401 Citrobacter rodentium 0 1 species 0 593 Citrobacter koseri 545 species 1 191675 0 26049 no rank 21 clade 21 0 26049 84563 genus 2 1 0 1802 Candidatus Mikella 1906660 2 species 1 1778264 0 1800 Candidatus Mikella endobia 1906661 5 0 Candidatus Gullanella 1252 genus 1 2 1070130 0 Candidatus Gullanella endobia 1247 species 1 146507 0 3280 clade 4 1503 Candidatus Hamiltonella 0 568987 27 2 1 genus 0 1476 Candidatus Hamiltonella defensa 138072 species 1 0 481 secondary endosymbiont of Ctenarytaina eucalypti 1199245 species 1 134287 secondary endosymbiont of Heteropsylla cubana 1296 0 1 species 2 1 genus 3983 Candidatus Tachikawaea 0 9 1682492 0 3974 Candidatus Tachikawaea gelatinosa 1410383 species 1 1906657 398 0 1 genus Candidatus Doolittlea endobia 398 0 1778262 1 species 7 clade 84564 13371 0 genus 1 7 203804 103 0 Candidatus Blochmannia 13371 251542 1899 Candidatus Blochmannia chromaiodes 0 1 species 1 species Candidatus Blochmannia pennsylvanicus 1853 0 101534 2 no rank 4474 0 711328 0 2497 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 species 1 1 species 1505596 1977 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 species 1 0 Candidatus Blochmannia floridanus 2342 203907 251535 2700 Candidatus Blochmannia vafer 0 1 species 199891 1407 0 1 clade 1835721 1407 secondary endosymbiont of Trabutina mannipara 0 1 species genus 1 2 3 1906659 0 556 Candidatus Hoaglandella species 1 1778263 0 553 Candidatus Hoaglandella endobia genus 8 1 413496 133 0 Cronobacter 3250 1 species 413503 368 Cronobacter malonaticus 0 0 Cronobacter turicensis 385 413502 species 1 1 species 413497 427 Cronobacter dublinensis 0 413501 0 435 Cronobacter muytjensii species 1 28141 0 655 Cronobacter sakazakii species 1 1163710 0 Cronobacter condimenti 426 species 1 1 species Cronobacter universalis 421 0 535744 4 1 genus 620 28 Shigella 822 0 Shigella flexneri 183 0 623 1 species 1 no rank 2629414 233 0 species 1 0 Shigella sp. PAMC 28760 233 1813821 622 Shigella dysenteriae 378 0 1 species 0 2947 36866 no rank 5 2066051 0 Enterobacteriaceae bacterium ENNIH1 504 species 1 0 359 Enterobacteriaceae bacterium strain FGI 57 693444 species 1 1920128 Enterobacteriaceae bacterium ENNIH3 464 0 1 species 891974 Plautia stali symbiont 1155 0 1 species species 1 1920109 0 Enterobacteriaceae bacterium ENNIH2 465 genus 3 1 0 Salmonella 9189 590 24 28901 0 Salmonella enterica 8506 species 1 54736 0 Salmonella bongori 659 species 1 Cedecea 1387 0 6 158483 1 2 genus 1 species 158822 1381 Cedecea neteri 0 2 401618 0 Candidatus Riesia 2125 genus 2 1 401619 0 Candidatus Riesia pediculicola 2123 species 1 0 1317 Pluralibacter 1330546 14 genus 1 3 1 species 61647 752 Pluralibacter gergoviae 0 [Enterobacter] lignolyticus 551 0 1334193 1 species 1048757 478 0 1 genus 1048758 478 Candidatus Moranella endobia 0 1 species 0 1361 Leclercia 83654 41 genus 1 4 1 species 83655 491 Leclercia adecarboxylata 0 2 no rank 829 0 2627398 1 species 1920114 Leclercia sp. LSNIH1 403 0 species 1 1920116 0 Leclercia sp. LSNIH3 426 family 39 1 0 31218 Yersiniaceae 106 1903411 0 Gibbsiella 522 12 929812 genus 1 2 1 species 929813 Gibbsiella quercinecans 510 0 503 Chania 0 1745211 5 2 1 genus 1639108 0 498 Chania multitudinisentens species 1 16 1 genus 435 613 Serratia 13413 0 no rank 8 2647522 0 4519 species 1 0 756 Serratia sp. SCBI 488142 1 species 567 Serratia sp. MYb239 0 2033438 species 1 104623 0 714 Serratia sp. ATCC 39006 1 species 768490 Serratia sp. AS12 430 0 species 1 768493 0 Serratia sp. AS13 430 522 Serratia sp. SSNIH1 0 1758196 1 species species 1 0 Serratia sp. FGI94 480 671990 1 species 1327989 Serratia sp. FS14 620 0 1 species 28151 433 Serratia proteamaculans 0 1 species Serratia marcescens 3780 0 615 61652 0 Serratia rubidaea 592 species 1 1 species 47917 Serratia fonticola 1263 0 614 Serratia liquefaciens 658 0 1 species species 1 82996 0 Serratia plymuthica 1146 Serratia ficaria 587 0 61651 1 species genus 4 1 0 1535 Rahnella 36 34037 2 no rank 1053 0 2635087 1 species 1805933 Rouxiella sp. ERMR1:05 567 0 species 1 741091 0 486 Rahnella sp. Y9602 species 1 0 Rahnella aquatilis 446 34038 1 genus Rouxiella 5 0 1565532 Yersinia 15134 0 244 629 1 13 genus 0 2085 Yersinia frederiksenii 29484 species 1 species 1 0 Yersinia kristensenii 779 28152 species group 3 1649845 0 4653 1 species 367190 1565 Yersinia similis 0 633 0 1746 Yersinia pseudotuberculosis species 1 species 1 632 0 Yersinia pestis 1342 631 0 Yersinia intermedia 765 species 1 29486 865 Yersinia ruckeri 0 1 species 29485 Yersinia rohdei 904 0 1 species 630 0 Yersinia enterocolitica 2909 species 1 263819 0 Yersinia aleksiciae 530 species 1 715 0 2653513 1 no rank 1 species 715 Yersinia sp. FDAARGOS_228 0 1839800 1 species 29483 685 Yersinia aldovae 0 14 1 family 1903412 25 Hafniaceae 15555 0 1 8 genus 12814 Edwardsiella 0 145 635 93378 0 461 Edwardsiella hoshinae species 1 Edwardsiella piscicida 566 0 1263550 1 species 0 Edwardsiella tarda 9270 636 species 1 no rank 2 0 1205 2676541 species 1 1650654 0 Edwardsiella sp. LADL05-105 600 1578828 0 605 Edwardsiella sp. EA181011 species 1 637 Edwardsiella anguillarum 0 1821960 1 species 67780 0 Edwardsiella ictaluri 530 species 1 genus 1 2 9 82982 0 589 Obesumbacterium 0 Obesumbacterium proteus 580 82983 species 1 genus 3 1 21 568 0 2127 Hafnia 1566 Hafnia alvei 0 569 1 species no rank 1 2621980 0 540 1848580 0 Hafnia sp. CBA7124 540 species 1 0 Budviciaceae 840 1903416 28 family 1 3 genus 2 1 0 Pragia 812 28 82984 784 Pragia fontium 0 82985 1 species 103 1903409 58423 Erwiniaceae 0 1 28 family 1 2 genus 32199 92 Buchnera 36365 0 9 0 36273 Buchnera aphidicola species 1 genus 1 2 89 51228 0 Wigglesworthia 7352 51229 Wigglesworthia glossinidia 7263 0 1 species 636 Tatumella 0 4 82986 1 2 genus Tatumella citrea 632 0 53336 1 species genus 2 2100764 0 1072 1 species 572 Pantoea calida 0 665913 500 Pantoea gaviniae 0 665914 1 species 8644 Pantoea 0 245 53335 1 11 genus 2489 Candidatus Pantoea carbekii 0 1235990 1 species species 1 0 Pantoea rwandensis 411 1076550 species group 1 1654067 0 899 species 1 549 0 Pantoea agglomerans 899 species 1 553 0 816 Pantoea ananatis 1655 0 2630326 3 no rank species 1 1484158 0 508 Pantoea sp. PSNIH1 1 species 592316 589 Pantoea sp. At-9b 0 species 1 1484157 0 558 Pantoea sp. PSNIH2 1 species 1891675 Pantoea alhagi 553 0 0 514 Pantoea stewartii 66269 species 1 1 species Pantoea vagans 1062 0 470934 8 1 genus 94 551 Erwinia 4251 0 0 Erwinia pyrifoliae 382 79967 species 1 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae 1279 0 1 species 1 no rank 395 0 2622719 395 Erwinia sp. Ejp617 0 215689 1 species Erwinia tasmaniensis 451 0 338565 1 species Erwinia gerundensis 537 0 1619313 1 species 0 569 Erwinia billingiae 182337 species 1 1 species 552 544 Erwinia amylovora 0 1903410 42 0 Pectobacteriaceae 11554 family 20 1 3407 Dickeya 0 91 204037 1 6 genus 1 species Dickeya solani 901 0 1089444 204042 Dickeya zeae 988 0 1 species 204038 473 Dickeya dadantii 0 1 species 0 483 Dickeya dianthicola 204039 species 1 1778540 0 Dickeya fangzhongdai 471 species 1 genus 5 1 0 Sodalis 2932 94 84565 species 1 0 Candidatus Sodalis pierantonius 734 1486991 0 Sodalis endosymbiont of Henestaris halophilus 807 1929246 species 1 1 species 63612 608 Sodalis glossinidius 0 1239307 0 689 Sodalis praecaptivus species 1 genus 6 1 0 4527 Pectobacterium 122277 110 1850 Pectobacterium carotovorum 0 554 1 species Pectobacterium wasabiae 543 0 55208 1 species species 1 0 907 Pectobacterium parmentieri 1905730 species 1 0 Pectobacterium atrosepticum 537 29471 2042057 0 580 Pectobacterium polaris species 1 20 71655 Brenneria 646 0 2 1 genus 1 species Brenneria goodwinii 626 0 1109412 order 1 6 9 1240482 0 7104 Orbales 5 1 family Orbaceae 7095 0 1240483 43 1335631 17 Frischella 3188 0 1 2 genus 1 species 1267021 3171 Frischella perrara 0 2 1 genus 3864 Gilliamella 0 12 1193503 1 species 1196095 Gilliamella apicola 3852 0 1 30 order 31500 Cellvibrionales 0 1706369 112 1 4 family Halieaceae 7948 0 1706372 9 genus 1 3 137 1217416 0 Halioglobus 7939 1 species 930806 5422 Halioglobus pacificus 0 species 1 930805 0 2380 Halioglobus japonicus 1 5 family 13 1706373 4872 Microbulbiferaceae 0 Microbulbifer 4859 0 142 48073 1 4 genus 1769779 0 Microbulbifer aggregans 1639 species 1 1 species 260552 Microbulbifer agarilyticus 1513 0 species 1 252514 0 1565 Microbulbifer thermotolerans 1706375 125 0 Spongiibacteraceae 6675 family 7 1 genus 2 1 1084558 15 0 Oceanicoccus 2668 716816 0 Oceanicoccus sagamiensis 2653 species 1 0 Spongiibacter 2011 10 630749 genus 1 2 no rank 1 2631504 0 2001 Spongiibacter sp. IMCC21906 2001 0 1620392 1 species genus 1 2 40 1434050 0 1871 Zhongshania species 1 0 Zhongshania aliphaticivorans 1831 1470434 13 1 family 111 1706371 11893 Cellvibrionaceae 0 0 Saccharophagus 2099 316625 13 genus 2 1 0 2086 Saccharophagus degradans 86304 species 1 1 2 genus 3 2036021 Agarilytica 2950 0 1737490 Agarilytica rhodophyticola 2947 0 1 species 43 10 3991 Cellvibrio 0 4 1 genus 2 no rank 2624793 2696 0 1 species 1352 Cellvibrio sp. PSBB006 0 1987723 0 Cellvibrio sp. PSBB023 1344 1945512 species 1 1252 Cellvibrio japonicus 0 155077 1 species 1 2 genus 1667 Teredinibacter 0 12 2425 0 Teredinibacter turnerae 1655 2426 species 1 1 2 genus 447467 7 Simiduia 1075 0 0 1068 Simiduia agarivorans 447471 species 1 order 21 1 78 118969 0 Legionellales 48953 85 444 Legionellaceae 42353 0 1 15 family 297 445 39867 Legionella 0 1 12 genus 1 species Legionella longbeachae 3576 0 450 species 1 0 Legionella clemsonensis 2551 1867846 446 0 10673 Legionella pneumophila species 1 449 2712 Legionella hackeliae 0 1 species 1 species 3842 Legionella sainthelensi 0 28087 0 Legionella lansingensis 2401 45067 species 1 species 1 0 Legionella fallonii 3432 96230 29423 Legionella oakridgensis 1888 0 1 species 1 species 2005262 Legionella endosymbiont of Polyplax serrata 4441 0 species 1 0 Legionella waltersii 2912 66969 species 1 0 1142 Legionella spiritensis 452 genus 2 1 0 2401 Tatlockia 465 15 451 0 Tatlockia micdadei 2386 species 1 0 Coxiellaceae 6522 118968 92 family 1 5 1 no rank 134284 2369 0 1592897 Coxiella-like endosymbiont 2369 0 1 species 0 Coxiella 4061 776 61 genus 1 3 1 no rank 2676648 2216 0 325775 Coxiella endosymbiont of Amblyomma americanum 2216 0 1 species 0 1784 Coxiella burnetii 777 species 1 135623 53 0 197551 Vibrionales order 1 44 Vibrionaceae 197498 0 318 641 43 1 family Aliivibrio 7133 0 58 511678 4 1 genus 0 Aliivibrio salmonicida 1970 40269 species 1 80852 Aliivibrio wodanis 2571 0 1 species 1 species 2534 Aliivibrio fischeri 0 668 genus 2 1 1 246861 0 841 Grimontia 1 species 840 Grimontia hollisae 0 673 30 1 genus Vibrio 168674 0 1170 662 1 species 55601 Vibrio anguillarum 2250 0 species 1 0 Vibrio qinghaiensis 1123 2025808 Vibrio tasmaniensis 1392 0 212663 1 species species 1 0 Vibrio nigripulchritudo 1457 28173 1435069 0 Vibrio tritonius 1397 species 1 1 species 1534743 Vibrio hyugaensis 1440 0 2614977 1974 0 2 no rank 0 1292 Vibrio sp. EJY3 1116375 species 1 0 682 Vibrio sp. 2521-89 2014742 species 1 species 1 0 Vibrio breoganii 1033 553239 1 species 687 Vibrio gazogenes 1647 0 190893 Vibrio coralliilyticus 78822 0 1 species 1 species 52443 1574 Vibrio tapetis 0 0 1671 Vibrio scophthalmi 45658 species 1 species 1 29494 0 1045 Vibrio furnissii species 1 0 1122 Vibrio fluvialis 676 672 4147 Vibrio vulnificus 0 1 species species 1 0 Vibrio mimicus 1369 674 1 species group 1891919 1942 0 29498 0 Vibrio tubiashii 1942 species 1 10 species group 717610 59649 0 species 1 0 Vibrio rotiferianus 1731 190895 670 0 Vibrio parahaemolyticus 4455 species 1 species 1 0 Vibrio owensii 3257 696485 species 1 0 Vibrio jasicida 1452 766224 1 species 21564 Vibrio campbellii 0 680 2249 Vibrio natriegens 0 691 1 species 2315253 4033 0 2 species subgroup 150340 0 1438 Vibrio antiquarius species 1 0 2595 Vibrio diabolicus 50719 species 1 1 species 663 Vibrio alginolyticus 10603 0 669 0 Vibrio harveyi 10305 species 1 666 0 Vibrio cholerae 2450 species 1 1 4 genus 25 657 12919 Photobacterium 0 species 1 0 Photobacterium gaetbulicola 856 1295392 74109 0 Photobacterium profundum 2307 species 1 species 1 0 9731 Photobacterium damselae 38293 2 1 genus 2042066 16 Paraphotobacterium 7613 0 1755811 Paraphotobacterium marinum 7597 0 1 species 135619 257 0 Oceanospirillales 61210 order 1 73 0 Oceanospirillaceae 14009 90 135620 family 13 1 1537406 27 0 Bacterioplanes 1378 genus 2 1 1249553 0 Bacterioplanes sanyensis 1351 species 1 genus 4 1 0 Marinomonas 6717 32 28253 2908 0 196814 1 no rank 400668 0 2908 Marinomonas sp. MWYL1 species 1 1 species Marinomonas posidonica 1717 0 936476 Marinomonas mediterranea 2060 0 119864 1 species 0 Marinobacterium 1569 12 48075 genus 1 2 species 1 1821621 0 Marinobacterium aestuarii 1557 genus 2 1 23 188907 0 2049 Oleispira species 1 188908 0 2026 Oleispira antarctica 16 187492 0 Thalassolituus 2206 genus 1 2 187493 0 Thalassolituus oleivorans 2190 species 1 3 1 family 1614 Oleiphilaceae 0 191033 32 2 1 genus 1582 Oleiphilus 0 10 141450 141451 Oleiphilus messinensis 1572 0 1 species family 1 6 0 Kangiellaceae 6409 1920240 76 genus 5 1 140 261963 0 6333 Kangiella 1441 Kangiella geojedonensis 0 914150 1 species species 1 0 Kangiella profundi 1545 1561924 1 species 261964 1494 Kangiella koreensis 0 1713 Kangiella sediminilitoris 0 1144748 1 species 5 1 family 20 255527 3130 Saccharospirillaceae 0 0 1714 Gynuella 17 1445504 genus 2 1 species 1 1445505 0 1697 Gynuella sunshinyii 2 1 genus 1396 Reinekea 0 14 230494 1336806 0 1382 Reinekea forsetii species 1 33 1 family 226 28256 26328 Halomonadaceae 0 0 Salinicola 1132 25 404432 genus 1 2 1771309 1107 Salinicola tamaricis 0 1 species 2 1 genus 1208 Cobetia 0 204286 12 28258 1196 Cobetia marina 0 1 species 3 1 genus 504090 35 1712 Kushneria 0 825 Kushneria konosiri 0 698828 1 species species 1 157779 0 852 Kushneria marisflavi 0 Chromohalobacter 1031 42054 1 genus 1 2 1 species 1030 Chromohalobacter salexigens 0 158080 1 2 genus 14 376488 Halotalea 1124 0 1 species Halotalea alkalilenta 1110 0 376489 6 no rank 5871 0 114403 genus 2 1 0 2255 Candidatus Portiera 17 235572 1 species 2238 Candidatus Portiera aleyrodidarum 0 91844 2 1 genus 1228 Candidatus Carsonella 0 4 114185 species 1 0 Candidatus Carsonella ruddii 1224 114186 genus 2 1 0 Candidatus Evansia 2388 1495768 9 2379 Candidatus Evansia muelleri 0 1495769 1 species 1 15 genus 312 2745 14024 Halomonas 0 1 species Halomonas beimenensis 1462 0 475662 2609666 7943 0 8 no rank 1 species Halomonas sp. GT 1064 0 1971364 1 species 1118153 833 Halomonas sp. GFAJ-1 0 species 1 1962264 0 906 Halomonas sp. 'Soap Lake #7' 1610576 0 Halomonas sp. R57-5 858 species 1 0 1160 Halomonas sp. SF2003 2136172 species 1 species 1 0 1008 Halomonas sp. KO116 1504981 species 1 1949203 0 Halomonas sp. 'Soap Lake #6' 905 species 1 0 Halomonas sp. 1513 1209 1883416 0 Halomonas aestuarii 1003 1897729 species 1 species 1 1178482 0 Halomonas huangheensis 901 1 species Halomonas chromatireducens 802 0 507626 115561 0 798 Halomonas hydrothermalis species 1 species 1 0 Halomonas campaniensis 803 213554 3 1 family 2 224379 1482 Hahellaceae 0 1 2 genus 30 158481 Hahella 1480 0 158327 1450 Hahella chejuensis 0 1 species 0 Alcanivoracaceae 7981 224372 55 family 9 1 0 Alcanivorax 6264 59753 255 genus 1 6 1 species 285091 1174 Alcanivorax dieselolei 0 species 1 1306787 0 1290 Alcanivorax pacificus species 1 0 1201 Alcanivorax borkumensis 59754 1207 Alcanivorax xenomutans 0 1094342 1 species 1137 0 2638842 1 no rank 1 species 1137 Alcanivorax sp. NBRC 101098 0 1113728 genus 2 1 42 2025617 0 1662 Ketobacter 1917421 Ketobacter alkanivorans 1620 0 1 species order 29 1 135624 96 0 Aeromonadales 18331 175 84642 Aeromonadaceae 18235 0 1 28 family genus 1 2 6 43947 0 754 Tolumonas 43948 Tolumonas auensis 748 0 1 species 7 129577 721 Oceanimonas 0 1 2 genus no rank 1 2636315 0 714 511062 0 714 Oceanimonas sp. GK1 species 1 genus 1 18 735 642 0 Aeromonas 13532 652 558 Aeromonas schubertii 0 1 species species 1 644 0 3006 Aeromonas hydrophila 1 species 1457 Aeromonas veronii 0 654 558964 0 534 Aeromonas aquatica species 1 645 0 Aeromonas salmonicida 1386 species 1 196024 0 619 Aeromonas dhakensis species 1 648 Aeromonas caviae 337 0 1 species 0 505 Aeromonas rivipollensis 948519 species 1 0 3907 257493 no rank 8 1636608 371 Aeromonas sp. ASNIH3 0 1 species 1 species 1920107 323 Aeromonas sp. ASNIH7 0 species 1 0 551 Aeromonas sp. CU5 2033033 0 Aeromonas sp. ASNIH1 588 1636606 species 1 species 1 2033032 0 Aeromonas sp. CA23 605 Aeromonas sp. ASNIH5 524 0 1758179 1 species 1 species 335 Aeromonas sp. ASNIH2 0 1636607 Aeromonas sp. ASNIH4 610 0 1636609 1 species 0 Aeromonas media 488 651 species 1 genus 1 2 0 1054 Zobellella 18 347533 1 species 347534 Zobellella denitrificans 1036 0 14 225143 0 1999 Oceanisphaera genus 1 3 1 species 1903694 1115 Oceanisphaera sp. AMac2203 0 1 species 870 Oceanisphaera profunda 0 1416627 no rank 2 0 2026 33811 1 species 1248727 endosymbiont of unidentified scaly snail isolate Monju 881 0 1 species gamma proteobacterium HdN1 1145 0 83406 no rank 14 118884 0 27647 2 1 genus 1524249 18 1553 Pseudohongiella 0 1249552 0 Pseudohongiella spirulinae 1535 species 1 3 1 genus 160 655184 8933 Candidatus Thioglobus 0 1 species 1427364 Candidatus Thioglobus singularis 6197 0 1705394 Candidatus Thioglobus autotrophicus 2576 0 1 species genus 2 1 0 Sedimenticola 1577 349742 26 1543721 0 Sedimenticola thiotaurini 1551 species 1 clade 1 198346 0 4951 species 1 186490 0 4951 Candidatus Baumannia cicadellinicola 23 1608298 0 Thiolapillus 894 genus 2 1 Thiolapillus brandeum 871 0 1076588 1 species 9739 0 32036 4 clade 113267 Bathymodiolus septemdierum thioautotrophic gill symbiont 2355 0 1 species 1 species 4135 Calyptogena okutanii thioautotrophic gill symbiont 0 410330 genus 2 1 1541743 24 0 Candidatus Ruthia 3249 species 1 0 Candidatus Ruthia magnifica 3225 386487 1692040 20 0 Acidiferrobacterales 2373 order 1 6 1 5 family 25 1692041 2353 Acidiferrobacteraceae 0 1692042 22 1377 Sulfurifustis 0 2 1 genus species 1 1675686 0 Sulfurifustis variabilis 1355 Sulfuricaulis 951 0 1744881 26 1 2 genus 0 925 Sulfuricaulis limicola 1620215 species 1 order 3 0 1253 135615 27 868 0 Cardiobacteriaceae 1253 family 3 1 Dichelobacter 1226 0 869 3 2 1 genus 1223 Dichelobacter nodosus 0 870 1 species 0 728 Nevskiales 1775403 30 order 4 1 568386 0 4 Sinobacteraceae family 1 family 2 2689614 0 694 0 Steroidobacter 694 40 469322 genus 2 1 1 species 465721 654 Steroidobacter denitrificans 0 order 4 1 1934945 16 0 Immundisolibacterales 1344 1328 Immundisolibacteraceae 0 6 1934946 1 3 family genus 2 1 1934947 17 0 Immundisolibacter 1322 1305 Immundisolibacter cernigliae 0 1810504 1 species Pasteurellales 37774 0 135625 22 1 33 order family 32 1 0 37752 Pasteurellaceae 230 712 476528 1 0 Bibersteinia 1799 genus 1 2 1798 Bibersteinia trehalosi 0 47735 1 species genus 1 2 2094023 7 0 2497 Glaesserella 2490 Glaesserella parasuis 0 738 1 species 771 Basfia 0 697331 21 2 1 genus 0 [Mannheimia] succiniciproducens 750 157673 species 1 4 1 genus 4180 Mannheimia 0 46 75984 75985 1309 Mannheimia haemolytica 0 1 species 1 no rank 1049 0 2645054 1 species Mannheimia sp. USDA-ARS-USMARC-1261 1049 0 1432056 Mannheimia varigena 1776 0 85404 1 species 91 724 0 11867 Haemophilus genus 6 1 1 species 730 [Haemophilus] ducreyi 2287 0 species 1 249188 0 1038 Haemophilus pittmaniae species 1 0 1442 Haemophilus parainfluenzae 729 0 1212 2609962 no rank 1 1 species Haemophilus sp. oral taxon 036 1212 0 712310 species 1 0 Haemophilus influenzae 5797 727 5 1 genus 3599 Actinobacillus 0 32 713 67854 530 Actinobacillus succinogenes 0 1 species 715 0 1176 Actinobacillus pleuropneumoniae species 1 1 species 718 Actinobacillus equuli 924 0 0 Actinobacillus suis 937 716 species 1 genus 2 1 9 214906 0 2256 Histophilus 731 Histophilus somni 2247 0 1 species 6 155493 0 Gallibacterium 1447 genus 2 1 750 0 Gallibacterium anatis 1441 species 1 genus 1 3 19 416916 0 Aggregatibacter 2214 714 0 Aggregatibacter actinomycetemcomitans 1073 species 1 Aggregatibacter aphrophilus 1122 0 732 1 species genus 1 3 0 Pasteurella 6892 745 87 0 1973 Pasteurella dagmatis 754 species 1 1 species 4832 Pasteurella multocida 0 747 507 72274 Pseudomonadales 184534 0 1 129 order 135621 555 0 Pseudomonadaceae 104359 family 86 1 2837 286 Pseudomonas 99486 0 80 1 genus species 1 237610 0 882 Pseudomonas psychrotolerans 0 Pseudomonas frederiksbergensis 1577 104087 species 1 4868 0 136842 2 species group 0 3736 Pseudomonas chlororaphis 587753 species 1 0 Pseudomonas fragi 1132 296 species 1 1 species 65741 1081 Pseudomonas knackmussii 0 1 species 481 Pseudomonas antarctica 0 219572 0 1202 Pseudomonas brassicacearum 930166 species 1 species 1 1853130 0 1080 Pseudomonas silesiensis 0 Pseudomonas parafulva 1064 157782 species 1 0 627 Pseudomonas cerasi 1583341 species 1 1 species 533 Pseudomonas rhizosphaerae 0 216142 136849 8937 0 8 species group 517 0 2775504 1 no rank species 1 1206777 0 Pseudomonas sp. Lz4W 517 species 1 0 Pseudomonas syringae group genomosp. 3 1255 251701 566 Pseudomonas viridiflava 0 33069 1 species 0 1487 251698 species subgroup 2 29438 0 Pseudomonas savastanoi 845 species 1 1 species Pseudomonas amygdali 642 0 47877 0 523 Pseudomonas cichorii 36746 species 1 4056 0 251695 1 species subgroup 317 Pseudomonas syringae 4056 0 1 species 1 species 46257 533 Pseudomonas avellanae 0 136841 0 13268 species group 6 53412 0 Pseudomonas resinovorans 1001 species 1 1 species subgroup 1138 0 1232139 1 species 1138 Pseudomonas furukawaii 0 1149133 1 species 287 5258 Pseudomonas aeruginosa 0 1 species Pseudomonas alcaligenes 925 0 43263 1 species 53408 1759 Pseudomonas citronellolis 0 0 Pseudomonas mendocina 3187 300 species 1 species 1 0 Pseudomonas versuta 701 1788301 196821 0 19651 no rank 30 1 species 1649877 613 Pseudomonas sp. CCOS 191 0 species 1 2083053 0 513 Pseudomonas sp. SWI44 1636610 0 662 Pseudomonas sp. PONIH3 species 1 species 1 0 542 Pseudomonas sp. FGI182 1259844 species 1 1028989 0 736 Pseudomonas sp. StFLB209 1 species 2018067 443 Pseudomonas sp. FDAARGOS_380 0 species 1 2083051 0 Pseudomonas sp. SWI6 527 1000 Pseudomonas sp. URMO17WK12:I11 0 1283291 1 species 0 Pseudomonas sp. MRSN12121 719 1611770 species 1 2083052 Pseudomonas sp. SWI36 538 0 1 species species 1 0 531 Pseudomonas sp. HLS-6 2049589 species 1 0 678 Pseudomonas sp. Os17 1500686 species 1 1659194 0 552 Pseudomonas sp. GR 6-02 69328 0 Pseudomonas sp. VLB120 449 species 1 species 1 1931241 0 Pseudomonas sp. S-6-2 950 species 1 0 Pseudomonas sp. XWY-1 597 2069256 1 species Pseudomonas sp. JY-Q 499 0 1338689 species 1 1534110 0 589 Pseudomonas sp. DR 5-09 species 1 0 549 Pseudomonas sp. LH1G9 2083055 species 1 0 Pseudomonas sp. St29 612 1500687 Pseudomonas sp. LG1D9 472 0 2083054 1 species 1294143 0 893 Pseudomonas sp. ATCC 13867 species 1 1415630 0 Pseudomonas sp. TKP 912 species 1 1898684 0 Pseudomonas sp. LPH1 818 species 1 species 1 0 795 Pseudomonas sp. M30-35 1981174 species 1 1930532 0 Pseudomonas sp. CC6-YY-74 1161 1 species 579 Pseudomonas sp. UW4 0 1207075 species 1 1856685 0 746 Pseudomonas sp. TCU-HL1 454 Pseudomonas sp. MYb193 0 1827300 1 species 2067572 0 Pseudomonas sp. NC02 522 species 1 Pseudomonas koreensis 1214 0 198620 1 species 136843 16133 0 9 species group 0 Pseudomonas mandelii 582 75612 species 1 1 species 467 Pseudomonas orientalis 0 76758 922 Pseudomonas protegens 0 380021 1 species species 1 294 0 10552 Pseudomonas fluorescens 715 Pseudomonas trivialis 0 200450 1 species 200451 Pseudomonas poae 530 0 1 species 1333 Pseudomonas azotoformans 0 47878 1 species 76761 523 Pseudomonas veronii 0 1 species species 1 0 Pseudomonas corrugata 509 47879 237609 0 Pseudomonas alkylphenolica 566 species 1 2 species group 6679 0 136846 5781 0 578833 1 species subgroup Pseudomonas stutzeri 5781 0 316 1 species 898 Pseudomonas balearica 0 74829 1 species species 1 244566 0 440 Pseudomonas lurida 6 species group 13720 0 136845 Pseudomonas plecoglossicida 538 0 70775 1 species 78327 0 Pseudomonas mosselii 1712 species 1 7819 Pseudomonas putida 0 303 1 species 76759 Pseudomonas monteilii 1771 0 1 species Pseudomonas fulva 1078 0 47880 1 species species 1 47885 0 802 Pseudomonas oryzihabitans species 1 0 557 Pseudomonas cremoricolorata 157783 1 species 312306 Pseudomonas entomophila 593 0 1 species Pseudomonas alcaliphila 795 0 101564 2 1 genus 14 1849530 1612 Oblitimonas 0 Oblitimonas alkaliphila 1598 0 1697053 1 species subfamily 3 351 0 2706 38 352 0 2706 Azotobacter genus 1 3 1 species Azotobacter vinelandii 986 0 354 0 1682 Azotobacter chroococcum 353 species 1 205 468 0 79668 Moraxellaceae family 1 42 335 497 0 13151 Psychrobacter genus 11 1 1177 Psychrobacter cryohalolentis 0 330922 1 species 196806 0 7690 no rank 6 species 1 0 Psychrobacter sp. PRwf-1 1434 349106 1 species 1720344 1252 Psychrobacter sp. AntiMn-1 0 1 species 1195 Psychrobacter sp. G 0 571800 1086 Psychrobacter sp. DAB_AL43B 0 1028416 1 species 1 species 1699622 Psychrobacter sp. P2G3 1397 0 1 species 1699624 1326 Psychrobacter sp. P11G5 0 species 1 0 Psychrobacter alimentarius 1415 261164 1 species Psychrobacter urativorans 1361 0 45610 334543 Psychrobacter arcticus 1173 0 1 species genus 5 1 59 475 0 Moraxella 6780 1 species 386891 1331 Moraxella bovoculi 0 species 1 0 813 Moraxella ovis 29433 species 1 0 1940 Moraxella catarrhalis 480 species 1 0 Moraxella osloensis 2637 34062 genus 25 1 0 Acinetobacter 59532 670 469 Acinetobacter equi 3712 0 1324350 1 species 1 species 108981 Acinetobacter schindleri 1277 0 species 1 40214 0 1467 Acinetobacter johnsonii 1 species 894 Acinetobacter indicus 0 756892 species 1 0 Acinetobacter soli 1458 487316 species 1 106648 0 2616 Acinetobacter bereziniae 1789224 Acinetobacter larvae 1531 0 1 species 40216 1619 Acinetobacter radioresistens 0 1 species species 1 202950 0 1879 62977 Acinetobacter sp. ADP1 1879 0 1 strain 7 no rank 10901 0 196816 species 1 1646498 0 Acinetobacter sp. TTH0-4 1942 1 species Acinetobacter sp. ACNIH2 1812 0 1758189 0 1249 Acinetobacter sp. LoGeW2-3 1808001 species 1 species 1 0 1501 Acinetobacter sp. NCu2D-2 1608473 species 1 1407071 0 Acinetobacter sp. TGL-Y2 1600 0 1480 Acinetobacter sp. SWBY1 2079596 species 1 species 1 1636603 0 Acinetobacter sp. ACNIH1 1317 1 species 40215 Acinetobacter junii 2852 0 Acinetobacter haemolyticus 2208 0 29430 1 species 0 24272 909768 species group 5 0 Acinetobacter pittii 7144 48296 species 1 Acinetobacter lactucae 2053 0 1785128 1 species 2721 Acinetobacter nosocomialis 0 106654 1 species 470 Acinetobacter baumannii 8387 0 1 species Acinetobacter calcoaceticus 3967 0 471 1 species 1 species 1148157 2176 Acinetobacter oleivorans 0 0 Chromatiales 32834 135613 272 order 1 52 0 1136 451214 no rank 2 1273155 26 0 1136 Thiohalobacter genus 1 2 Thiohalobacter thiocyanaticus 1110 0 585455 1 species Chromatiaceae 14632 0 134 1046 1 18 family 957 0 82569 1 no rank 1978339 957 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 1 species 0 Thiodictyon 3250 33 53392 genus 2 1 1 species Candidatus Thiodictyon syntrophicum 3217 0 1166950 genus 1 2 16 1980513 0 Candidatus Nitrosoglobus 2053 1630141 Candidatus Nitrosoglobus terrae 2037 0 1 species 0 Allochromatium 918 9 85072 genus 2 1 0 909 Allochromatium vinosum 1049 species 1 Nitrosococcus 3696 0 1227 52 1 4 genus 1 species 1239 Nitrosococcus oceani 0 1229 1532 Nitrosococcus watsonii 0 473531 1 species 133539 873 Nitrosococcus halophilus 0 1 species 947 Thiocystis 0 10 13724 1 2 genus 73141 Thiocystis violascens 937 0 1 species 0 Marichromatium 1311 15 85076 genus 2 1 0 1296 Marichromatium purpuratum 37487 species 1 1 2 genus 22 156885 Thioflavicoccus 1366 0 80679 Thioflavicoccus mobilis 1344 0 1 species 4 1 family Halothiobacillaceae 1461 0 15 255526 109262 56 Halothiobacillus 1446 0 3 1 genus 927 Halothiobacillus neapolitanus 689 0 1 species 1 no rank 701 0 2636392 Halothiobacillus sp. LS2 701 0 1860122 1 species family 18 1 0 10062 Ectothiorhodospiraceae 176 72276 36 1335745 0 Spiribacter 1574 genus 1 3 1335746 0 614 Spiribacter salinus species 1 1 species 924 Spiribacter curvatus 0 1335757 Ectothiorhodospira 924 0 1051 17 2 1 genus no rank 1 2684909 0 907 1 species 1442136 Ectothiorhodospira sp. BSL-9 907 0 genus 1 2 11 1765964 0 785 Acidihalobacter 160660 0 774 Acidihalobacter prosperus species 1 1 2 genus Alkalilimnicola 989 0 15 133193 1 species 351052 974 Alkalilimnicola ehrlichii 0 85108 15 800 Halorhodospira 0 1 2 genus 0 Halorhodospira halophila 785 1053 species 1 4814 Thioalkalivibrio 0 177 106633 1 6 genus species 1 1033854 0 1333 Thioalkalivibrio sulfidiphilus 108010 0 768 Thioalkalivibrio paradoxus species 1 186931 Thioalkalivibrio nitratireducens 796 0 1 species 106634 0 808 Thioalkalivibrio versutus species 1 2621013 932 0 1 no rank 0 932 Thioalkalivibrio sp. K90mix 396595 species 1 3 1 family 14 1676141 Wenzhouxiangellaceae 1397 0 2 1 genus Wenzhouxiangella 1383 0 13 1676142 species 1 1579979 0 1370 Wenzhouxiangella marina 3 1 family Granulosicoccaceae 2128 0 42 449719 437504 40 0 2086 Granulosicoccus genus 1 2 437505 2046 Granulosicoccus antarcticus 0 1 species 1738654 8 0 Woeseiaceae 1746 family 1 3 14 1738655 0 Woeseia 1738 genus 1 2 1548547 0 1724 Woeseia oceani species 1 0 10658 Oligoflexia 1553900 22 class 13 1 213481 28 Bdellovibrionales 4175 0 1 5 order 213483 17 Bdellovibrionaceae 4147 0 1 4 family genus 3 1 29 958 0 Bdellovibrio 4130 1 species 959 Bdellovibrio bacteriovorus 2837 0 species 1 0 Bdellovibrio exovorus 1264 453816 6461 Bacteriovoracales 0 20 2024979 1 7 order 3 1652132 0 4442 Halobacteriovoraceae family 3 1 1 2 genus 4439 Halobacteriovorax 0 18 1652133 1 species 4421 Halobacteriovorax marinus 0 97084 1 263369 0 1999 Bacteriovoracaceae family 1 3 genus 1 2 10 146784 0 1998 Bacteriovorax 1988 Bacteriovorax stolpii 0 960 1 species 68525 0 250303 subphylum 203 class 1 73 29547 113 0 Epsilonproteobacteria 157928 order 1 66 0 Campylobacterales 154668 213849 315 261 72294 0 130236 Campylobacteraceae family 41 1 57665 133 0 10248 Sulfurospirillum genus 9 1 1 species 1417 Sulfurospirillum deleyianum 0 65553 366522 680 Sulfurospirillum cavolei 0 1 species 3 no rank 4896 0 2618290 220622 0 Sulfurospirillum sp. JPD-1 1396 species 1 species 1 1986224 0 1478 Sulfurospirillum sp. SL2-1 Sulfurospirillum sp. UCH001 2022 0 1581011 1 species species 1 0 Sulfurospirillum multivorans 970 66821 1 species 194424 903 Sulfurospirillum halorespirans 0 1 species 44674 1249 Sulfurospirillum barnesii 0 721 194 Campylobacter 83033 0 26 1 genus 1 species 195 5267 Campylobacter coli 0 species 1 497724 0 3685 Campylobacter subantarcticus species 1 488546 0 Campylobacter peloridis 3255 Campylobacter insulaenigrae 4161 0 260714 1 species species 1 0 Campylobacter jejuni 6822 197 3254 Campylobacter fetus 0 196 1 species species 1 0 Campylobacter ureolyticus 4179 827 1 species 2608 Campylobacter cuniculorum 0 374106 76517 0 1883 Campylobacter hominis species 1 1 species 3861 Campylobacter volucris 0 1031542 species 1 206 0 5802 Campylobacter sputorum Campylobacter hyointestinalis 2635 0 198 1 species 522485 1875 Campylobacter avium 0 1 species 75658 1457 Campylobacter lanienae 0 1 species 1 species 428 Campylobacter curvus 0 200 10408 0 2593542 4 no rank Campylobacter sp. RM12175 2434 0 1660076 1 species 1660074 Campylobacter sp. RM8964 2581 0 1 species 3840 Campylobacter sp. RM16704 0 1500960 1 species 0 1553 Campylobacter sp. RM6137 1660073 species 1 species 1 199 0 Campylobacter concisus 2076 1 species Campylobacter iguaniorum 1876 0 1244531 species 1 201 0 Campylobacter lari 9834 28898 0 Campylobacter helveticus 1596 species 1 1 species Campylobacter gracilis 353 0 824 4997 Campylobacter pinnipediorum 0 1965231 1 species 0 36694 2321108 no rank 5 8974 0 2321207 1 no rank 1 species 944547 8974 Arcobacter sp. L 0 0 8761 2321187 genus 1 Arcobacter sp. LPB0137 8761 0 1850254 1 species 18959 Arcobacter 0 294 28196 1 3 genus 28199 7218 Arcobacter nitrofigilis 0 1 species 1 species 28197 11447 Arcobacter butzleri 0 family 1 15 0 Helicobacteraceae 17765 22 72293 0 17298 Helicobacter 209 65 genus 12 1 37372 1329 Helicobacter bilis 0 1 species species 1 210 0 6558 Helicobacter pylori 504 Helicobacter felis 0 214 1 species 32025 0 Helicobacter hepaticus 1581 species 1 Helicobacter himalayensis 766 0 1591088 1 species Helicobacter cetorum 2104 0 138563 1 species 217 711 Helicobacter mustelae 0 1 species 1 species 213 1201 Helicobacter cinaedi 0 species 1 212 0 676 Helicobacter acinonychis 0 817 2593540 no rank 1 species 1 0 817 Helicobacter sp. MIT 01-6242 222136 species 1 76936 0 986 Helicobacter typhlonius 1 2 genus 843 1 445 Wolinella 0 1 species 844 444 Wolinella succinogenes 0 family 5 0 1884 2771472 5 269260 445 Nitratifractor 0 2 1 genus Nitratifractor salsuginis 440 0 269261 1 species genus 1 3 39 265570 0 1439 Sulfurovum 2646778 0 637 no rank 1 1 species Sulfurovum sp. NBC37-1 637 0 387093 0 763 Sulfurovum lithotrophicum 206403 species 1 2771471 4468 0 4 family genus 1 3 0 3966 Sulfurimonas 35 202746 species 1 39766 0 Sulfurimonas denitrificans 2233 202747 0 Sulfurimonas autotrophica 1698 species 1 286130 0 502 genus 1 species 1 0 Sulfuricurvum kujiense 502 148813 4 235899 Nautiliales 3147 0 6 1 order 3 1 family 224467 15 2083 Nautiliaceae 0 genus 2 1 0 Nautilia 2068 13 191291 244787 0 2055 Nautilia profundicola species 1 2 family 2795691 1060 0 genus 2 1 269258 6 0 1060 Nitratiruptor 2624044 1054 0 1 no rank species 1 387092 0 Nitratiruptor sp. SB155-2 1054 28221 144 0 Deltaproteobacteria 92375 class 1 130 69541 172 0 Desulfuromonadales 12764 order 24 1 213421 37 0 4314 Desulfuromonadaceae family 1 9 0 1921 Desulfuromonas 38 890 genus 3 1 1 species 1603606 1036 Desulfuromonas soudanensis 0 no rank 1 0 847 2614637 1823759 847 Desulfuromonas sp. DDH964 0 1 species genus 5 1 0 Pelobacter 2356 57 18 no rank 1 0 573 2620299 1842532 0 573 Pelobacter sp. SFB93 species 1 1 species Pelobacter propionicus 583 0 29543 0 588 Pelobacter carbinolicus 19 species 1 29542 0 Pelobacter acetylenicus 555 species 1 213422 56 0 8278 Geobacteraceae family 1 14 2 1 genus 19 392332 693 Geoalkalibacter 0 species 1 483547 0 Geoalkalibacter subterraneus 674 1 11 genus Geobacter 7529 0 139 28231 0 Geobacter uraniireducens 1624 351604 species 1 2 no rank 2627627 1636 0 1 species 752 Geobacter sp. M21 0 443144 1 species 443143 Geobacter sp. M18 884 0 1 species 35554 Geobacter sulfurreducens 472 0 0 698 Geobacter pickeringii 345632 species 1 1 species 28232 Geobacter metallireducens 604 0 1 species 313985 570 Geobacter lovleyi 0 species 1 0 459 Geobacter anodireducens 1340425 1 species 1203471 615 Geobacter daltonii 0 1 species Geobacter bemidjiensis 712 0 225194 213115 116 0 13451 Desulfovibrionales order 1 26 Desulfovibrionaceae 11761 0 107 194924 18 1 family 0 637 2582840 genus 1 637 Desulfovibrio africanus 0 873 1 species 1047 0 2794998 1 genus species 1 0 Desulfovibrio salexigens 1047 880 genus 1 4 0 Pseudodesulfovibrio 1619 18 2035811 1 species Pseudodesulfovibrio profundus 392 0 57320 1 species 627 Pseudodesulfovibrio indicus 0 1716143 182210 582 Pseudodesulfovibrio aespoeensis 0 1 species genus 1 2 41707 4 0 3143 Lawsonia 29546 0 Lawsonia intracellularis 3139 species 1 Desulfovibrio 5208 0 872 66 1 9 genus 2593640 286 0 1 no rank 631220 0 286 Desulfovibrio sp. G11 species 1 1 species 184917 998 Desulfovibrio magneticus 0 1 species 58180 Desulfovibrio alaskensis 661 0 1 species 881 1430 Desulfovibrio vulgaris 0 901 0 375 Desulfovibrio piger species 1 1 species 200 Candidatus Desulfovibrio trichonymphae 0 1725232 1 species 44742 Desulfovibrio fairfieldensis 359 0 876 0 833 Desulfovibrio desulfuricans species 1 family 1 3 1 213117 0 Desulfohalobiaceae 427 2 1 genus 45662 6 426 Desulfohalobium 0 species 1 45663 0 Desulfohalobium retbaense 420 family 1 4 0 Desulfomicrobiaceae 1147 12 213116 1 3 genus 1135 Desulfomicrobium 0 12 898 species 1 132132 0 Desulfomicrobium orale 505 1 species 899 618 Desulfomicrobium baculatum 0 1 4 order 10 453227 923 Desulfarculales 0 family 1 3 0 913 Desulfarculaceae 21 453228 genus 1 2 0 Desulfarculus 892 16 453229 species 1 0 Desulfarculus baarsii 876 453230 0 9978 Desulfobacterales 213118 76 order 20 1 family 1 10 0 6350 Desulfobacteraceae 213119 47 1 3 genus 1289 Desulfococcus 0 896 6 1 species 897 610 Desulfococcus multivorans 0 species 1 0 673 Desulfococcus oleovorans 181663 26 218207 0 Desulfatibacillum 1843 genus 2 1 0 1817 Desulfatibacillum alkenivorans 259354 species 1 28222 11 0 2326 Desulfobacula genus 1 2 1 species Desulfobacula toluolica 2315 0 28223 2 1 genus 2295 23 845 Desulfobacterium 0 1 species 2296 Desulfobacterium autotrophicum 822 0 0 3552 Desulfobulbaceae 213121 37 family 9 1 genus 2 1 0 Desulfobulbus 595 16 893 1986146 0 579 Desulfobulbus sp. ORNL species 1 0 Desulfurivibrio 516 2 427922 genus 2 1 species 1 427923 0 Desulfurivibrio alkaliphilus 514 2 1 genus Desulfotalea 1245 0 109168 26 species 1 84980 0 Desulfotalea psychrophila 1219 0 Desulfocapsa 1159 2 53318 genus 2 1 65555 1157 Desulfocapsa sulfexigens 0 1 species order 1 6 213113 7 0 Desulfurellales 5362 0 Desulfurellaceae 5355 117942 6 family 5 1 Desulfurella 3751 0 8 33001 1 2 genus 1 species 3743 Desulfurella acetivorans 0 33002 genus 1 2 9 84404 0 1598 Hippea 1 species 84405 Hippea maritima 1589 0 1 11 order Syntrophobacterales 2382 0 35 213462 family 1 7 0 1833 Syntrophaceae 213468 19 1 2 genus Desulfobacca 602 0 4 60892 0 598 Desulfobacca acetoxidans 60893 species 1 2357 4 654 Desulfomonile 0 1 2 genus 0 Desulfomonile tiedjei 650 2358 species 1 3 43773 0 558 Syntrophus genus 1 2 1 species Syntrophus aciditrophicus 555 0 316277 3 1 family Syntrophobacteraceae 514 0 11 213465 genus 2 1 0 Syntrophobacter 503 12 29526 species 1 119484 0 Syntrophobacter fumaroxidans 491 order 1 38 29 455 0 47371 Myxococcales 80812 15704 0 8 suborder family 5 1 36 49 0 11832 Polyangiaceae Chondromyces 2438 0 13 50 2 1 genus 0 2425 Chondromyces crocatus 52 species 1 Sorangium 9358 0 42 39643 1 2 genus 1 species Sorangium cellulosum 9316 0 56 family 3 1 1055686 14 0 Sandaracinaceae 3872 1055688 19 0 Sandaracinus 3858 genus 1 2 1 species Sandaracinus amylolyticus 3839 0 927083 27217 0 80811 26 suborder 8 1524213 1313 Vulgatibacteraceae 0 1 3 family 0 1305 Vulgatibacter 1524214 15 genus 2 1 0 Vulgatibacter incomptus 1290 1391653 species 1 family 1 5 18 1524215 0 Anaeromyxobacteraceae 5818 0 5800 Anaeromyxobacter 55 161492 genus 4 1 2620896 3229 0 2 no rank 1 species 1505 Anaeromyxobacter sp. K 0 447217 404589 Anaeromyxobacter sp. Fw109-5 1724 0 1 species species 1 0 2516 Anaeromyxobacter dehalogenans 161493 1 9 family 31 44 11974 Myxococcaceae 0 genus 1 5 0 Myxococcus 8367 256 32 species 1 0 Myxococcus xanthus 1416 34 33 Myxococcus fulvus 3457 0 1 species 1674 Myxococcus stipitatus 0 83455 1 species species 1 0 1564 Myxococcus hansupus 1297742 84 83461 Corallococcus 3563 0 1 3 genus species 1 35 0 Myxococcus macrosporus 1640 1839 Corallococcus coralloides 0 184914 1 species 9 1 family 8112 Archangiaceae 0 150 39 2 1 genus 1447 Stigmatella 0 11 40 1 species 1436 Stigmatella aurantiaca 0 41 Cystobacter 2060 0 42 10 2 1 genus 43 Cystobacter fuscus 2050 0 1 species 0 2895 Archangium 14 47 genus 1 2 48 2881 Archangium gephyra 0 1 species genus 2 1 0 Melittangium 1560 18 44 83453 1542 Melittangium boletus 0 1 species suborder 3 0 3995 224462 0 3995 Kofleriaceae 224464 22 family 3 1 Haliangium 3973 0 162027 21 2 1 genus 0 3952 Haliangium ochraceum 80816 species 1 1 6 class 580370 4 1397 Zetaproteobacteria 0 order 5 1 0 Mariprofundales 1393 29 580371 0 1364 Mariprofundaceae 6 580372 family 4 1 0 1358 Mariprofundus 377315 51 genus 3 1 1 species 1921087 659 Mariprofundus ferrinatatus 0 species 1 0 648 Mariprofundus aestuarium 1921086 20788 0 200783 28 phylum 187857 47 0 20788 Aquificae class 28 1 order 1 6 7 1485951 0 3391 Desulfurobacteriales 0 3384 Desulfurobacteriaceae 558314 28 family 1 5 2 1 genus 319 Thermovibrio 0 4 171868 Thermovibrio ammonificans 315 0 228745 1 species 2 1 genus 64159 13 Desulfurobacterium 3037 0 64160 Desulfurobacterium thermolithotrophum 3024 0 1 species order 1 21 32069 30 0 Aquificales 17350 0 Hydrogenothermaceae 8334 7 224027 family 6 1 2 1 genus 182899 9 2092 Persephonella 0 0 Persephonella marina 2083 309805 species 1 3 1 genus 6235 Sulfurihydrogenibium 0 212790 111 0 Sulfurihydrogenibium azorense 2780 309806 species 1 no rank 1 0 3344 2619248 1 species Sulfurihydrogenibium sp. YO3AOP1 3344 0 436114 8109 Aquificaceae 0 64898 13 13 1 family Hydrogenobaculum 6738 0 255 168657 1 6 genus 2622382 0 6483 no rank 5 1288 Hydrogenobaculum sp. 3684 0 547143 1 species 0 Hydrogenobaculum sp. Y04AAS1 1331 380749 species 1 1 species 1288 Hydrogenobaculum sp. SHO 0 547145 1 species 547146 Hydrogenobaculum sp. SN 1288 0 Hydrogenobaculum sp. HO 1288 0 547144 1 species 466 0 939 1 genus species 1 0 466 Hydrogenobacter thermophilus 940 0 Aquifex 314 2713 2 genus 2 1 species 1 63363 0 Aquifex aeolicus 312 Thermocrinis 578 0 3 75905 3 1 genus 0 Thermocrinis albus 283 136094 species 1 75906 Thermocrinis ruber 292 0 1 species no rank 1 0 877 90150 genus 1 0 877 412592 412593 Thermosulfidibacter takaii 877 0 1 species 987 0 1930617 4 phylum 0 Calditrichae 987 2 1962850 class 1 4 order 3 1 0 Calditrichales 985 8 1962852 0 977 Calditrichaceae 1962854 9 family 2 1 genus 1 187144 0 968 species 1 187145 0 Caldithrix abyssi 968 32066 0 90621 phylum 26 0 Fusobacteriia 90621 116 203490 class 26 1 order 1 25 0 90505 Fusobacteriales 128 203491 47 1129771 0 Leptotrichiaceae 21221 family 1 12 1 5 genus Leptotrichia 12221 0 47 32067 1 species Leptotrichia buccalis 3175 0 40542 2633022 0 8999 no rank 3 Leptotrichia sp. oral taxon 498 3191 0 712368 1 species 712357 0 Leptotrichia sp. oral taxon 212 2463 species 1 1 species 1785996 Leptotrichia sp. oral taxon 847 3345 0 0 Streptobacillus 3673 34104 5 genus 1 2 species 1 0 Streptobacillus moniliformis 3668 34105 genus 1 2 0 2549 Sebaldella 3 32068 1 species 2546 Sebaldella termitidis 0 826 0 2731 Sneathia 16 168808 genus 1 2 species 1 0 2715 Sneathia amnii 187101 12 1 family 203492 96 69156 Fusobacteriaceae 0 Ilyobacter 2459 0 167639 4 1 2 genus 0 2455 Ilyobacter polytropus 167642 species 1 genus 1 9 0 66601 Fusobacterium 334 848 1 species 2498 Fusobacterium gonidiaformans 0 849 1 species Fusobacterium varium 8139 0 856 species 1 0 24882 Fusobacterium nucleatum 851 4000 Fusobacterium mortiferum 0 850 1 species 860 0 12968 Fusobacterium periodonticum species 1 859 1562 Fusobacterium necrophorum 0 1 species 0 Fusobacterium hwasookii 7774 1583098 species 1 0 Fusobacterium ulcerans 4444 861 species 1 clade 5 0 1112 2498710 67814 1112 0 5 phylum 5 693071 0 Caldisericia 1112 class 5 1 10 693072 0 Caldisericales 1107 order 1 4 5 693073 1097 Caldisericaceae 0 3 1 family genus 2 1 693074 4 0 1092 Caldisericum Caldisericum exile 1088 0 693075 1 species 631804 0 1783270 388 clade phylum 8 0 3611 142182 class 8 1 0 Gemmatimonadetes 3611 11 219685 0 Gemmatimonadales 3600 38 219686 order 7 1 27 219687 0 3562 Gemmatimonadaceae family 6 1 45 173479 1340 Gemmatimonas 0 1 3 genus 673 Gemmatimonas aurantiaca 0 173480 1 species 0 Gemmatimonas phototrophica 622 1379270 species 1 8 1706036 0 2195 Gemmatirosa genus 1 2 1 species 861299 2187 Gemmatirosa kalamazoonesis 0 2 phylum 1227 0 456828 0 1227 Candidatus Cloacimonas 6 456826 genus 1 2 456827 0 Candidatus Cloacimonas acidaminovorans 1221 species 1 373 clade 68336 626136 0 1090 0 8889 phylum 22 class 1 22 41 191410 0 Chlorobia 8889 1 21 order 191411 58 Chlorobiales 8848 0 191412 74 0 Chlorobiaceae 8790 family 20 1 4 1 genus 179 256319 1704 Chlorobaculum 0 species 1 274537 0 561 Chlorobaculum limnaeum 462 Chlorobaculum tepidum 0 1097 1 species species 1 0 502 Chlorobaculum parvum 274539 genus 5 1 0 1770 Prosthecochloris 129 1101 2632826 1166 0 3 no rank species 1 1974213 0 377 Prosthecochloris sp. HL-130-GSB species 1 0 Prosthecochloris sp. CIB 2401 349 1868325 281093 0 440 Prosthecochloris sp. GSB1 species 1 1102 475 Prosthecochloris aestuarii 0 1 species genus 2 1 3 100715 0 Chloroherpeton 959 species 1 0 956 Chloroherpeton thalassium 100716 no rank 8 0 4283 274493 1091 126 0 3258 Chlorobium genus 1 5 1092 0 Chlorobium limicola 490 species 1 0 396 Chlorobium phaeovibrioides 1094 species 1 Chlorobium phaeobacteroides 1332 0 1096 1 species species 1 337090 0 Chlorobium chlorochromatii 914 1099 12 Pelodictyon 1025 0 1 3 genus 691 Pelodictyon phaeoclathratiforme 0 34090 1 species species 1 1100 0 322 Pelodictyon luteolum 0 611804 Bacteroidetes 976 90 phylum 343 1 1100069 33 3529 Bacteroidetes Order II. Incertae sedis 0 1 7 order 563843 23 Rhodothermaceae 3496 0 6 1 family genus 1 2 23 29548 0 Rhodothermus 1185 29549 1162 Rhodothermus marinus 0 1 species 1 2 genus 5 146918 Salinibacter 1001 0 1 species 146919 Salinibacter ruber 996 0 1196022 0 1287 no rank 1 1 species 1779382 1287 Rhodothermaceae bacterium RA 0 1853228 11 9517 Chitinophagia 0 1 16 class 15 1 order 20 1853229 Chitinophagales 9506 0 94 563835 9486 Chitinophagaceae 0 14 1 family genus 1 0 1118 1769012 2636138 0 1118 no rank 1 1850526 1118 Arachidicoccus sp. BS20 0 1 species genus 3 1 2 79328 0 Chitinophaga 2232 79329 0 1046 Chitinophaga pinensis species 1 1 species 2029983 1184 Chitinophagaceae bacterium 13 0 10 354354 1317 Niastella 0 1 2 genus species 1 354356 0 Niastella koreensis 1307 1 3 genus 16 379899 1893 Niabella 0 species 1 0 Niabella ginsenosidivorans 977 1176587 0 900 Niabella soli 446683 species 1 2 1 genus 1668 Flavisolibacter 0 2 398041 1666 Flavisolibacter tropicus 0 1492898 1 species 0 Filimonas 1164 7 649460 genus 2 1 0 Filimonas lacunae 1157 477680 species 1 class 8 1 0 2686 Saprospiria 2 1937959 Saprospirales 2684 0 1936988 4 7 1 order 89374 2 0 Saprospiraceae 1055 family 1 3 Saprospira 1053 0 10 1007 2 1 genus Saprospira grandis 1043 0 1008 1 species 0 1625 Haliscomenobacteraceae 1937961 4 family 3 1 genus 1 2 2349 27 0 1621 Haliscomenobacter species 1 2350 0 1594 Haliscomenobacter hydrossis class 1 153 0 461242 Flavobacteriia 265 117743 order 152 1 0 Flavobacteriales 460977 413 200644 1853230 3 Crocinitomicaceae 3067 0 3 1 family Fluviicola 3064 0 18 332102 1 2 genus 191579 3046 Fluviicola taffensis 0 1 species 0 2751 Ichthyobacteriaceae 1755828 13 family 3 1 2738 Ichthyobacterium 0 65 1755829 1 2 genus species 1 0 2673 Ichthyobacterium seriolicida 242600 0 23 Cryomorphaceae 246874 family 1 2 family 2498 0 1333713 genus 2 1 0 Owenweeksia 2498 59 267986 253245 Owenweeksia hongkongensis 2439 0 1 species 313602 5399 0 4 no rank genus 2 1 1940138 3 0 Candidatus Walczuchella 928 1415657 Candidatus Walczuchella monophlebidarum 925 0 1 species 19 336809 0 4471 Candidatus Sulcia genus 2 1 1 species 336810 Candidatus Sulcia muelleri 4452 0 1855 49546 0 378114 Flavobacteriaceae family 1 107 1 216431 Croceibacter 5193 0 2 1 genus 1 species Croceibacter atlanticus 5192 0 313588 389486 2474 0 1 genus 2648869 0 2474 no rank 1 1453352 2474 Sediminicola sp. YIK13 0 1 species 12573 Winogradskyella 0 59 286104 3 1 genus 2615021 12514 0 2 no rank 1 species 5171 Winogradskyella sp. J14-2 0 1936080 0 7343 Winogradskyella sp. PG-2 754409 species 1 275 76831 10677 Myroides 0 1 5 genus 0 5092 2642485 no rank 2 species 1 0 2543 Myroides sp. ZB35 1458492 1583100 0 Myroides sp. A21 2549 species 1 76832 0 Myroides odoratimimus 2760 species 1 0 2550 Myroides profundi 480520 species 1 0 Aequorivita 3209 2 153265 genus 1 2 101385 Aequorivita sublithincola 3207 0 1 species 1 1209327 0 Flavivirga 5400 genus 2 1 species 1 0 5399 Flavivirga eckloniae 1803846 174 252356 Maribacter 16871 0 1 5 genus 1 species 1178778 Maribacter cobaltidurans 2697 0 2615042 14000 0 3 no rank 1836467 4941 Maribacter sp. T28 0 1 species 4157 Maribacter sp. HTCC2170 0 313603 1 species species 1 0 Maribacter sp. 1_2014MBL_MicDiv 4902 1644130 Polaribacter 45117 0 52959 293 6 1 genus 1774273 9984 Polaribacter vadi 0 1 species 996801 10515 Polaribacter reichenbachii 0 1 species 0 24325 196858 no rank 3 species 1 1529069 0 Polaribacter sp. BM10 8358 1 species Polaribacter sp. ALD11 7105 0 2058137 species 1 313598 0 8862 Polaribacter sp. MED152 genus 1 3 41 111500 0 Muricauda 6463 516051 0 Muricauda lutaonensis 2740 species 1 111501 Muricauda ruestringensis 3682 0 1 species genus 2 1 0 Wenyingzhuangia 5949 2 1518147 1 species 1790137 5947 Wenyingzhuangia fucanilytica 0 2 1 genus 1 336276 5713 Olleya 0 0 5712 2615019 no rank 1 1 species 2058135 5712 Olleya sp. Bg11-27 0 1204360 0 5428 genus 1 1 species 762954 5428 Siansivirga zeaxanthinifaciens 0 417127 4341 0 1 genus 1 species 4341 Zunongwangia profunda 0 398743 genus 1 143222 0 3832 2633436 0 3832 no rank 1 1 species Salegentibacter sp. T436 3832 0 1729720 genus 9 1 237 105 0 Flavobacterium 41218 species 1 1306519 0 Flavobacterium commune 3629 1492737 0 3647 Flavobacterium gilvum species 1 species 1 0 Flavobacterium indicum 5882 312277 4147 Flavobacterium psychrophilum 0 96345 1 species 1 species 996 7916 Flavobacterium columnare 0 species 1 0 Flavobacterium crassostreae 2557 1763534 species 1 0 9467 Flavobacterium johnsoniae 986 1 species 3868 Flavobacterium branchiophilum 0 55197 9517 0 2700084 1 genus 0 Lutibacter sp. LPB0138 9517 1850246 species 1 genus 1 83612 0 4497 4497 Psychroflexus torquis 0 57029 1 species 0 7413 Algibacter 261827 1 genus 2 1 1 species 1736674 7412 Algibacter alginicilyticus 0 4 1 genus 104264 92 Cellulophaga 20329 0 59600 0 6279 Cellulophaga algicola species 1 979 7049 Cellulophaga lytica 0 1 species 1 species 6909 Cellulophaga baltica 0 76594 genus 1 4 93 326319 0 Dokdonia 10841 1 species 326320 3614 Dokdonia donghaensis 0 2615033 0 7134 no rank 2 1 species 983548 Dokdonia sp. 4H-3-7-5 3752 0 1 species 313590 Dokdonia sp. MED134 3382 0 2 1 genus 34 358023 8526 Lutibacter 0 Lutibacter profundi 8492 0 1622118 1 species 85 104267 Tenacibaculum 32643 0 5 1 genus species 1 0 6392 Tenacibaculum maritimum 107401 Tenacibaculum todarodis 8929 0 1850252 1 species species 1 669041 0 Tenacibaculum dicentrarchi 6723 0 10514 Tenacibaculum jejuense 584609 species 1 genus 5 1 61 292691 0 Gramella 10854 1 species 3685 Gramella forsetii 0 411153 species 1 2126553 0 Gramella sp. SH35 2367 species 1 1913577 0 Gramella sp. LPB0144 3052 1486245 0 1689 Gramella flava species 1 1649495 7225 0 1 genus no rank 1 2622645 0 7225 1 species Seonamhaeicola sp. S2-3 7225 0 1936081 0 Aureitalea 2585 2 1176327 genus 2 1 1 no rank 2636237 2583 0 2094025 0 2583 Aureitalea sp. RR4-38 species 1 1 2 genus 3 178469 Arenibacter 3104 0 Arenibacter algicola 3101 0 616991 1 species genus 1 252306 0 1026 252307 0 Robiginitalea biformata 1026 species 1 no rank 2 0 7159 61432 1 species 1150389 6005 Flavobacteriaceae bacterium UJ101 0 1 species 1154 Flavobacteriaceae bacterium 3519-10 0 531844 0 4613 393005 genus 1 species 1 0 Tamlana sp. UJ94 4613 2069432 genus 1 4 0 Lacinutrix 21840 291183 224 0 14510 2647285 no rank 2 7066 Lacinutrix sp. Bg11-31 0 2057808 1 species species 1 983544 0 7444 Lacinutrix sp. 5H-3-7-4 species 1 0 Lacinutrix venerupis 7106 1486034 363408 411 0 16150 Nonlabens genus 5 1 0 7587 2615035 no rank 2 1 species 1476901 4191 Nonlabens sp. MIC269 0 3396 Nonlabens sp. MB-3u-79 0 2058134 1 species species 1 0 Nonlabens dokdonensis 4008 328515 1 species 4144 Nonlabens sediminis 0 319236 15 1 genus 1016 166 22171 Capnocytophaga 0 0 2334 Capnocytophaga cynodegmi 28189 species 1 1019 0 Capnocytophaga sputigena 2336 species 1 1848904 0 1916 Capnocytophaga stomatis species 1 no rank 6 0 8593 2640652 209053 Capnocytophaga sp. ChDC OS43 1201 0 1 species species 1 0 962 Capnocytophaga sp. oral taxon 323 1705617 0 1919 Capnocytophaga sp. H2931 1945657 species 1 species 1 1945658 0 Capnocytophaga sp. H4358 1900 Capnocytophaga sp. oral taxon 864 1194 0 1316593 1 species 1316596 0 1417 Capnocytophaga sp. oral taxon 878 species 1 1 species 1156 Capnocytophaga leadbetteri 0 327575 45243 0 716 Capnocytophaga haemolytica species 1 1 species 1018 924 Capnocytophaga ochracea 0 28188 Capnocytophaga canimorsus 2866 0 1 species 1017 Capnocytophaga gingivalis 1164 0 1 species 112040 0 1676 genus 1 Zobellia galactanivorans 1676 0 63186 1 species 36 225842 Formosa 9632 0 3 1 genus 9596 0 2644710 2 no rank 5683 Formosa sp. Hel3_A1_48 0 1336795 1 species 1 species 1336794 3913 Formosa sp. Hel1_33_131 0 21 family 2762318 48947 0 2 1 genus 28250 7 Ornithobacterium 2016 0 28251 0 Ornithobacterium rhinotracheale 2009 species 1 6 1 genus 308865 151 16145 Elizabethkingia 0 1 species 5698 Elizabethkingia anophelis 0 1117645 1756149 Elizabethkingia genomosp. 3 2411 0 1 species species 1 172045 0 Elizabethkingia miricola 3458 238 Elizabethkingia meningoseptica 2264 0 1 species 1756150 0 2163 Elizabethkingia genomosp. 4 species 1 no rank 10 0 23905 2782232 genus 9 1 0 Chryseobacterium 22749 59732 161 species 1 0 1908 Chryseobacterium gallinarum 1324352 0 8398 2593645 no rank 3 0 2848 Chryseobacterium sp. StRB126 878220 species 1 1721091 0 Chryseobacterium sp. IHB B 17019 2266 species 1 species 1 2015076 0 Chryseobacterium sp. T16E-39 3284 1685010 Chryseobacterium glaciei 3667 0 1 species species 1 0 Chryseobacterium indologenes 4604 253 558152 2965 Chryseobacterium piperi 0 1 species 1265445 1046 Chryseobacterium camelliae 0 1 species 1156 0 2782228 1 genus 1 species 1156 Chryseobacterium taklimakanense 0 536441 genus 1 2 10 34084 0 4521 Riemerella 34085 4511 Riemerella anatipestifer 0 1 species 1 genus 2360 0 1013 1014 0 Weeksella virosa 2360 species 1 family 1 10 0 Blattabacteriaceae 19765 39782 24 9 1 genus 156 34098 19741 Blattabacterium 0 Blattabacterium cuenoti 2578 0 1653831 1 species 0 2502 Blattabacterium punctulatus 164514 species 1 14505 0 2647581 6 no rank 367488 0 2165 Blattabacterium sp. (Periplaneta americana) species 1 624186 0 Blattabacterium sp. (Blattella germanica) 2438 species 1 1 species Blattabacterium sp. (Nauphoeta cinerea) 2564 0 1316444 367806 0 Blattabacterium sp. (Blatta orientalis) 2184 species 1 0 Blattabacterium sp. (Mastotermes darwiniensis) 2049 39768 species 1 1186051 0 Blattabacterium sp. (Blaberus giganteus) 3105 species 1 84 200643 0 Bacteroidia 40361 class 72 1 12 1 order 39 1970189 8727 Marinilabiliales 0 1471398 1 0 1572 Prolixibacteraceae family 1 3 2 1 genus 1471399 10 Draconibacterium 1571 0 1 species Draconibacterium orientale 1561 0 1168034 0 1791 Marinilabiliaceae 558415 8 family 3 1 0 1783 Alkalitalea 31 1193324 genus 1 2 Alkalitalea saponilacus 1752 0 889453 1 species 0 3276 Marinifilaceae 1573805 11 family 2 1 2060722 3265 0 1 genus species 1 1717717 0 Marinifilaceae bacterium SPP2 3265 3 1 family 1970190 3 Salinivirgaceae 2049 0 Salinivirga 2046 0 1970191 7 2 1 genus 1 species Salinivirga cyanobacteriivorans 2039 0 1307839 59 1 order 158 171549 31550 Bacteroidales 0 1 7 family 2005520 7 Dysgonamonadaceae 3094 0 genus 2 1 8 1784836 0 Fermentimonas 1906 1562970 Fermentimonas caenicola 1898 0 1 species genus 2 1 16 294702 0 Proteiniphilum 688 1 species 672 Proteiniphilum saccharofermentans 0 1642647 307628 7 0 Petrimonas 493 genus 1 2 1642646 Petrimonas mucosa 486 0 1 species 0 719 185291 no rank 1 1400053 Bacteroidales bacterium CF 719 0 1 species 11 1 family Prevotellaceae 6185 0 171552 6 genus 10 1 0 Prevotella 6179 838 64 76123 0 Prevotella enoeca 329 species 1 28132 0 Prevotella melaninogenica 643 species 1 589436 0 472 Prevotella fusca species 1 52227 Prevotella dentalis 497 0 1 species 28131 0 1727 Prevotella intermedia species 1 0 1136 2638335 no rank 1 652716 0 1136 Prevotella sp. oral taxon 299 species 1 species 1 28129 0 Prevotella denticola 265 585 Prevotella jejuni 0 1177574 1 species species 1 839 0 461 Prevotella ruminicola 171551 6 0 1109 Porphyromonadaceae family 1 4 30 836 0 1103 Porphyromonas genus 1 3 28123 0 Porphyromonas asaccharolytica 365 species 1 species 1 0 Porphyromonas gingivalis 708 837 0 7867 Bacteroidaceae 815 16 family 1 11 127 816 0 7851 Bacteroides genus 10 1 species 1 47678 0 791 Bacteroides caccae species 1 0 485 Bacteroides zoogleoformans 28119 0 960 Bacteroides ovatus 28116 species 1 1 species 818 1009 Bacteroides thetaiotaomicron 0 1796613 0 Bacteroides caecimuris 718 species 1 1 species 290053 584 Bacteroides helcogenes 0 1 species 500 Bacteroides heparinolyticus 0 28113 species 1 0 Bacteroides cellulosilyticus 965 246787 1 species Bacteroides fragilis 1712 0 817 family 1 4 0 Rikenellaceae 1032 3 171550 genus 1 239759 0 503 214856 503 Alistipes finegoldii 0 1 species 2 1 genus Mucinivorans 526 0 1 1611681 species 1 1433126 0 Mucinivorans hirudinis 525 6 2005525 2305 Tannerellaceae 0 1 7 family genus 3 1 375288 9 0 1276 Parabacteroides 823 Parabacteroides distasonis 630 0 1 species 637 0 2649774 1 no rank 0 Parabacteroides sp. CT06 637 2025876 species 1 0 1023 Tannerella 7 195950 genus 1 3 2620507 491 0 1 no rank species 1 712710 0 491 Tannerella sp. oral taxon HOT-286 28112 0 Tannerella forsythia 525 species 1 no rank 5 333046 0 6378 3506 Candidatus Azobacteroides 0 511434 22 2 1 genus species 1 511435 0 Candidatus Azobacteroides pseudotrichonymphae 3484 0 2872 909656 genus 3 1010 Bacteroides vulgatus 0 821 1 species species 1 376805 0 Bacteroides salanitronis 922 357276 0 Bacteroides dorei 940 species 1 3 1 family 2 2005523 1513 Paludibacteraceae 0 Paludibacter 1511 0 346096 10 1 2 genus Paludibacter propionicigenes 1501 0 185300 1 species family 1 3 0 435 Barnesiellaceae 3 2005519 5 397864 0 Barnesiella 432 genus 1 2 397865 0 427 Barnesiella viscericola species 1 family 2 0 755 1853231 1 2 genus Odoribacter 755 0 5 283168 28118 750 Odoribacter splanchnicus 0 1 species 1 62 class Cytophagia 58209 0 768503 65 0 Cytophagales 58144 768507 233 order 61 1 39 563798 13439 Cyclobacteriaceae 0 1 10 family 1 2 genus 390846 38 Echinicola 1420 0 1 species 390884 1382 Echinicola vietnamensis 0 1 2 genus 2109 Algoriphagus 0 9 246875 species 1 0 2100 Algoriphagus sp. M8-2 1727163 genus 3 1 0 6206 Cyclobacterium 68288 43 0 Cyclobacterium amurskyense 3096 320787 species 1 104 0 Cyclobacterium marinum 3067 species 1 genus 2 1 0 3665 Belliella 27 232244 1 species 232259 3638 Belliella baltica 0 family 2 2762301 0 4490 0 Marivirga 4490 869806 33 genus 2 1 1 species Marivirga tractuosa 4457 0 1006 family 3 1 12 1853234 0 Persicobacteraceae 2353 16 59740 Persicobacter 2341 0 1 2 genus 2664020 2325 0 1 no rank 0 Persicobacter sp. JZB09 2325 1085624 species 1 41 1853232 10321 Hymenobacteraceae 0 1 16 family 16 323449 0 Pontibacter 1957 genus 3 1 species 1 0 848 Pontibacter akesuensis 388950 400092 0 1093 Pontibacter korlensis species 1 0 5714 Hymenobacter 89966 85 genus 8 1 5 no rank 2615202 4155 0 1 species 1484116 Hymenobacter sp. PAMC 26554 950 0 1385664 0 Hymenobacter sp. DG25B 539 species 1 1 species 1356852 961 Hymenobacter sp. APR13 0 species 1 1385663 0 524 Hymenobacter sp. DG25A 1 species 1181 Hymenobacter sp. PAMC 26628 0 1484118 1 species 1446467 760 Hymenobacter swuensis 0 1 species 1411621 Hymenobacter sedentarius 714 0 0 2609 Rufibacter 1379908 28 genus 4 1 2 no rank 2639626 1509 0 1 species 1379910 Rufibacter sp. DG31D 779 0 1379909 730 Rufibacter sp. DG15C 0 1 species Rufibacter tibetensis 1072 0 512763 1 species 1 3 family 28 1937968 Bernardetiaceae 5942 0 Bernardetia 5914 0 1937972 86 2 1 genus 1 species 999 5828 Bernardetia litoralis 0 1 5 family 2080 Amoebophilaceae 0 25 1501348 genus 2 1 0 720 Candidatus Cardinium 273135 2 no rank 1 0 718 2641185 249402 0 Cardinium endosymbiont of Encarsia pergandiella 718 species 1 genus 2 1 281119 10 0 1335 Candidatus Amoebophilus 0 1325 Candidatus Amoebophilus asiaticus 281120 species 1 17 89373 10688 Cytophagaceae 0 1 17 family genus 1 2 0 1489 Leadbetterella 16 319458 0 1473 Leadbetterella byssophila 316068 species 1 2 1 genus Cytophaga 2488 0 101 978 species 1 985 0 2387 Cytophaga hutchinsonii 1244 Runella 0 6 105 1 2 genus 0 Runella slithyformis 1238 106 species 1 47 107 Spirosoma 4037 0 6 1 genus species 1 0 Spirosoma aerolatum 882 1211326 1 species Spirosoma montaniterrae 611 0 1178516 0 668 Spirosoma rigui 564064 species 1 1379870 815 Spirosoma radiotolerans 0 1 species species 1 2057025 0 1014 Spirosoma sp. HA7 0 Dyadobacter 845 120831 12 genus 1 2 1 species 94254 Dyadobacter fermentans 833 0 568 Fibrella 0 3 861914 1 2 genus 2620963 565 0 1 no rank 1 species 1834519 565 Fibrella sp. ES10-3-2-2 0 0 Flammeovirgaceae 8598 29 200667 family 1 4 1 no rank 4263 0 340671 1257021 0 4263 Flammeovirgaceae bacterium 311 species 1 33 59739 0 4306 Flammeovirga genus 1 2 1 no rank 4273 0 2637820 1191459 Flammeovirga sp. MY04 4273 0 1 species 117747 47 0 Sphingobacteriia 36170 class 24 1 order 23 1 200666 91 0 Sphingobacteriales 36123 family 1 22 0 36032 Sphingobacteriaceae 84566 115 1649482 15 0 3119 Pseudopedobacter genus 1 2 Pseudopedobacter saltans 3104 0 151895 1 species genus 1 2 7 929509 0 Solitalea 2913 species 1 0 Solitalea canadensis 2906 995 genus 1 4 0 4454 Mucilaginibacter 37 423349 no rank 1 0 1179 2617802 1 species 1300914 Mucilaginibacter sp. PAMC 26640 1179 0 1234841 0 Mucilaginibacter sp. BJC16-A31 1625 species 1 0 Mucilaginibacter gotjawali 1613 1550579 species 1 1 no rank 84568 3400 0 species 1 1986952 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 3400 12130 Pedobacter 0 124 84567 1 6 genus species 1 0 Pedobacter heparinus 1767 984 1 species 2911 Pedobacter cryoconitis 0 188932 363852 0 2785 Pedobacter ginsengisoli species 1 no rank 1 0 2406 2628915 1 species 2406 Pedobacter sp. PACM 27299 0 1727164 0 2137 Pedobacter steynii 430522 species 1 0 9901 Sphingobacterium 96 28453 genus 6 1 1 species 1010 Sphingobacterium mizutaii 1725 0 2609468 8080 0 4 no rank 1 species 1933220 Sphingobacterium sp. B29 2043 0 Sphingobacterium sp. 21 1496 0 743722 1 species 2003121 2130 Sphingobacterium sp. G1-14 0 1 species 0 2411 Sphingobacterium sp. ML3W 1538644 species 1 phylum 8 1134404 0 5443 21 795747 0 Ignavibacteria 5443 class 1 8 order 1 7 31 795748 0 5422 Ignavibacteriales family 3 1 11 795749 0 Ignavibacteriaceae 4364 2 1 genus 4353 Ignavibacterium 0 30 795750 species 1 0 4323 Ignavibacterium album 591197 1 3 family 1334117 5 Melioribacteraceae 1027 0 0 1022 Melioribacter 1134403 22 genus 2 1 0 Melioribacter roseus 1000 1134405 species 1 830 0 65842 5 phylum class 5 1 0 830 Fibrobacteria 204430 3 0 Fibrobacterales 827 2 218872 order 1 4 204431 2 825 Fibrobacteraceae 0 3 1 family genus 1 2 6 832 0 823 Fibrobacter 833 0 Fibrobacter succinogenes 817 species 1 12 phylum 508458 2077 0 class 1 12 0 2077 Synergistia 7 649775 6 649776 0 Synergistales 2070 order 1 11 10 1 family 8 649777 Synergistaceae 2064 0 463 Thermovirga 0 1 336260 1 2 genus 1 species 336261 462 Thermovirga lienii 0 genus 1 2 0 Aminobacterium 580 10 81466 1 species Aminobacterium colombiense 570 0 81468 1 genus 49894 374 0 species 1 0 Acetomicrobium mobile 374 97477 Thermanaerovibrio 226 0 1 81461 1 2 genus 81462 0 Thermanaerovibrio acidaminovorans 225 species 1 genus 2 1 0 413 Cloacibacillus 508459 8 405 Cloacibacillus porcorum 0 1197717 1 species 203691 0 62728 phylum 57 class 1 57 119 203692 0 62728 Spirochaetia 0 Spirochaetales 37216 119 136 order 1 40 1643685 126 0 26799 Borreliaceae family 1 17 747 64895 0 12424 Borreliella genus 1 8 0 1212 Borreliella valaisiana 62088 species 1 1 species 64897 Borreliella bissettii 1599 0 0 Borreliella burgdorferi 1548 139 species 1 species 1 0 Borreliella garinii 2767 29519 species 1 1674146 0 Borrelia mayonii 1566 species 1 664662 0 Borreliella bavariensis 1245 species 1 0 Borreliella afzelii 1740 29518 genus 8 1 0 Borrelia 14249 462 138 44449 0 2105 Borrelia recurrentis species 1 species 1 0 Borrelia miyamotoi 3179 47466 1 species 1428 Borrelia hermsii 0 140 0 2496 Borrelia duttonii 40834 species 1 0 1615 Borrelia turicatae 142 species 1 143 Borrelia anserina 1408 0 1 species 141 Borrelia parkeri 1556 0 1 species 137 73 0 Spirochaetaceae 10298 family 22 1 12 1 genus Treponema 6605 0 74 157 1 no rank 356 0 2638727 1 species 1539298 356 Treponema sp. OMZ 838 0 409322 0 1076 Treponema pedis species 1 1 species 378 Treponema brennaborense 0 81028 species 1 160 0 Treponema pallidum 272 species 1 0 290 Treponema paraluiscuniculi 53435 1 species Treponema putidum 830 0 221027 species 1 0 719 Treponema caldarium 215591 158 Treponema denticola 859 0 1 species species 1 0 Treponema succinifaciens 955 167 150829 0 354 Treponema azotonutricium species 1 species 1 88058 0 442 Treponema primitia 399320 6 1060 Sphaerochaeta 0 1 4 genus 1131703 Sphaerochaeta globosa 290 0 1 species 273376 0 311 Sphaerochaeta coccoides species 1 Sphaerochaeta pleomorpha 453 0 1131707 1 species genus 1 0 602 1911556 1 species 602 Sediminispirochaeta smaragdinae 0 55206 genus 1 1616789 0 767 0 Salinispira pacifica 767 1307761 species 1 0 Spirochaeta 1191 146 3 genus 3 1 Spirochaeta thermophila 514 0 154 1 species 0 Spirochaeta africana 674 46355 species 1 order 7 1 1643686 40 0 Brachyspirales 16349 6 1 family 16309 Brachyspiraceae 0 143786 12 genus 1 5 0 Brachyspira 16297 68 29521 0 3979 Brachyspira hyodysenteriae 159 species 1 52584 5058 Brachyspira pilosicoli 0 1 species 1 species 3302 Brachyspira murdochii 0 84378 3890 Brachyspira intermedia 0 84377 1 species order 9 1643688 0 9044 family 1 9 64 170 0 9044 Leptospiraceae 495 Turneriella 0 8 338321 1 2 genus 29510 0 Turneriella parva 487 species 1 genus 1 6 28 171 0 Leptospira 8485 898 Leptospira alstonii 0 28452 1 species 173 0 3742 Leptospira interrogans species 1 1 species 172 Leptospira biflexa 1807 0 0 Leptospira borgpetersenii 1329 174 species 1 681 Leptospira santarosai 0 28183 1 species phylum 11 200930 0 10100 Deferribacteres 10100 0 68337 52 1 11 class 0 Deferribacterales 10048 45 191393 order 1 10 family 9 1 0 Deferribacteraceae 10003 39 191394 genus 2 1 117999 21 0 1305 Denitrovibrio 1 species Denitrovibrio acetiphilus 1284 0 118000 2351 12 0 Flexistipes 1621 genus 1 2 2352 0 Flexistipes sinusarabici 1609 species 1 6 53572 0 5090 Deferribacter genus 1 2 species 1 0 5084 Deferribacter desulfuricans 197162 6 545865 1948 Calditerrivibrio 0 2 1 genus species 1 0 Calditerrivibrio nitroreducens 1942 477976 6 phylum 4647 0 68297 203486 13 Dictyoglomia 4647 0 6 1 class 203487 18 0 Dictyoglomales 4634 order 5 1 Dictyoglomaceae 4616 0 28 203488 4 1 family 13 23 4588 Dictyoglomus 0 3 1 genus 1 species 14 2138 Dictyoglomus thermophilum 0 species 1 513050 0 Dictyoglomus turgidum 2427 5685 0 57723 20 phylum 3 1 class 4 1562566 Blastocatellia 743 0 1 2 genus 8 458032 Chloracidobacterium 739 0 731 Chloracidobacterium thermophilum 0 458033 1 species class 17 1 204432 28 0 Acidobacteriia 4942 order 4 1 0 1171 Solibacterales 11 332160 3 1 family 9 332161 1160 Solibacteraceae 0 1 2 genus 13 332162 Candidatus Solibacter 1151 0 1138 Candidatus Solibacter usitatus 0 332163 1 species order 1 12 204433 54 0 Acidobacteriales 3743 family 1 11 0 3689 Acidobacteriaceae 40 204434 genus 3 1 0 1036 Terriglobus 7 392733 392734 529 Terriglobus roseus 0 1 species species 1 0 Terriglobus saanensis 500 870903 8 658061 596 Candidatus Koribacter 0 1 2 genus 0 588 Candidatus Koribacter versatilis 658062 species 1 861 Acidobacterium 0 33973 3 2 1 genus 1 species Acidobacterium capsulatum 858 0 33075 0 Granulicella 1156 4 940557 genus 1 3 species 1 0 536 Granulicella mallensis 940614 species 1 940615 0 616 Granulicella tundricola 101 clade 43106 0 1783257 134625 0 664 phylum 5 1 1921781 664 Kiritimatiellae 0 5 1 class 0 663 Kiritimatiellales 1921782 12 order 4 1 4 1921783 Kiritimatiellaceae 651 0 3 1 family 1921784 6 647 Kiritimatiella 0 1 2 genus 1307763 0 641 Kiritimatiella glycovorans species 1 phylum 26 0 11431 204428 0 11431 Chlamydiia 46 204429 class 26 1 0 Parachlamydiales 3396 11 1963360 order 11 1 family 4 0 1941 92713 genus 2 1 0 Parachlamydia 1199 1 83551 species 1 83552 0 1198 Parachlamydia acanthamoebae 1 2 genus Candidatus Protochlamydia 742 0 5 282132 Candidatus Protochlamydia naegleriophila 737 0 389348 1 species 0 868 Simkaniaceae 92712 3 family 3 1 865 Simkania 0 3 34093 1 2 genus 1 species 862 Simkania negevensis 0 83561 576 Waddliaceae 0 92714 3 1 3 family 2 1 genus Waddlia 573 0 71666 2 1 species 571 Waddlia chondrophila 0 71667 7989 Chlamydiales 0 51291 22 1 14 order 1 13 family Chlamydiaceae 7967 0 12 809 7955 0 1113537 12 no rank 82 810 0 7955 Chlamydia genus 1 12 1457141 0 759 Chlamydia avium species 1 Chlamydia trachomatis 672 0 813 1 species species 1 83558 0 793 Chlamydia pneumoniae species 1 0 Chlamydia abortus 731 83555 species 1 0 Chlamydia suis 458 83559 1457153 Chlamydia gallinacea 714 0 1 species 0 Chlamydia felis 781 83556 species 1 Chlamydia pecorum 756 0 85991 1 species 0 Chlamydia caviae 719 83557 species 1 Chlamydia psittaci 1080 0 83554 1 species species 1 83560 0 Chlamydia muridarum 410 phylum 38 203682 0 19264 class 28 1 0 14444 Planctomycetia 203683 52 3748 0 2691356 7 order 1 7 family Isosphaeraceae 3748 0 31 1763524 20 127 Isosphaera 855 0 1 2 genus 0 835 Isosphaera pallida 128 species 1 genus 1 2 0 Singulisphaera 1260 13 466152 species 1 466153 0 1247 Singulisphaera acidiphila 1602 Paludisphaera 0 1763521 6 2 1 genus species 1 0 1596 Paludisphaera borealis 1387353 order 3 2691355 0 1255 1 3 family 1914233 3 Gemmataceae 1255 0 2 1 genus 1252 Gemmata 0 27 113 2622970 0 1225 no rank 1 1 species 1630693 Gemmata sp. SH-PL17 1225 0 6 order 3144 0 2691354 527 0 2691358 2 family genus 2 1 1676125 1 0 527 Thermogutta 1331910 0 Thermogutta terrifontis 526 species 1 4 family 2617 0 2691357 genus 2 1 2 123 0 1223 Pirellula species 1 125 0 Pirellula staleyi 1221 1394 Rhodopirellula 0 8 265488 2 1 genus species 1 265606 0 Rhodopirellula baltica 1386 order 11 1 181 112 0 6245 Planctomycetales 126 44 Planctomycetaceae 6064 0 1 10 family 1 2 genus 1936111 4 1235 Fuerstia 0 species 1 0 Fuerstia marisgermanicae 1231 1891926 Rubinisphaera 1042 0 3 1649490 1 2 genus 1 species 119 1039 Rubinisphaera brasiliensis 0 1 3 genus 3146 Planctomyces 0 10 118 2 no rank 3136 0 2648843 Planctomyces sp. SH-PL62 1596 0 1636152 1 species 1 species 1632864 1540 Planctomyces sp. SH-PL14 0 2 1 genus 1 1649480 Planctopirus 597 0 species 1 120 0 596 Planctopirus limnophila 0 1848 2517206 class 3 0 1848 Candidatus Brocadiales 1127829 12 order 1 3 family 2 1 0 Candidatus Brocadiaceae 1836 4 1127830 genus 1 380738 0 1832 1832 Candidatus Kuenenia stuttgartiensis 0 174633 1 species 0 2972 Phycisphaerae 666505 17 class 1 7 2 order 1197 0 2483366 2483367 0 1197 family 2 2483368 0 1197 genus 2 1941349 0 Phycisphaerae bacterium ST-PulAB-D4 553 species 1 1940790 0 644 Phycisphaerae bacterium L21-RPul-D3 species 1 0 Phycisphaerales 1758 17 666506 order 1 4 0 Phycisphaeraceae 1741 666507 16 family 3 1 1725 Phycisphaera 0 5 666508 2 1 genus species 1 0 1720 Phycisphaera mikurensis 547188 29 1 phylum 10 74201 Verrucomicrobia 11012 0 class 6 1 0 Verrucomicrobiae 1180 203494 10 8 48461 Verrucomicrobiales 1170 0 5 1 order 12 1647988 0 1162 Akkermansiaceae family 1 4 3 1 genus 239934 25 Akkermansia 1150 0 1 species 624 Akkermansia glycaniphila 0 1679444 1 species 501 Akkermansia muciniphila 0 239935 12 1 class 414999 10 5437 Opitutae 0 1 4 order 2004 Puniceicoccales 0 2 415001 family 3 1 415002 10 0 Puniceicoccaceae 2002 Coraliomargarita 1992 0 10 442430 2 1 genus species 1 395922 0 Coraliomargarita akajimensis 1982 415000 42 0 Opitutales 3423 order 1 7 family 6 1 0 3381 Opitutaceae 134623 36 genus 2 1 1961799 6 0 1060 Lacunisphaera 1 species 1838286 1054 Lacunisphaera limnophila 0 no rank 1 0 1211 278955 1 species Opitutaceae bacterium TAV5 1211 0 794903 genus 2 1 7 178440 0 Opitutus 1074 species 1 0 Opitutus terrae 1067 107709 134549 0 411 class 2 20 134550 411 Candidatus Xiphinematobacter 0 2 1 genus 2648876 0 391 no rank 1 1704307 0 391 Candidatus Xiphinematobacter sp. Idaho Grape species 1 2 no rank 1896 0 417295 0 Verrucomicrobia bacterium IMCC26134 815 1637999 species 1 0 Verrucomicrobia bacterium 1081 2026799 species 1 1955630 3 Methylacidiphilae 2078 0 1 6 class order 1 5 0 Methylacidiphilales 2075 717963 11 4 717964 0 2064 Methylacidiphilaceae family 4 1 21 511745 0 2060 Methylacidiphilum genus 1 3 Methylacidiphilum infernorum 703 0 511746 1 species 591154 Methylacidiphilum fumariolicum 1336 0 1 species 3 phylum 256845 735 0 1 3 class Lentisphaeria 735 0 19 1313211 18 278082 0 Victivallales 716 order 2 1 1 no rank 1674876 698 0 Victivallales bacterium CCUG 44730 698 0 2094242 1 species 15 74152 Elusimicrobia 4612 0 11 1 phylum 1 no rank 99260 1343 0 1 species 167965 1343 uncultured Termite group 1 bacterium 0 641853 767 0 3 class 1 3 order 2 641854 Elusimicrobiales 767 0 0 765 641876 family 2 Elusimicrobium 765 0 6 423604 2 1 genus 423605 0 Elusimicrobium minutum 759 species 1 447830 12 0 2487 Endomicrobia class 6 1 2475 Endomicrobiales 0 1783344 4 5 1 order family 4 1 2 1783343 0 2471 Endomicrobiaceae Endomicrobium 2469 0 12 1408194 1 3 genus species 1 1408281 0 1241 Endomicrobium proavitum species 1 1408204 0 1216 Candidatus Endomicrobium trichonymphae 200918 35467 0 43 phylum 35467 Thermotogae 0 74 188708 1 43 class order 1 6 0 Kosmotogales 2258 25 1643946 family 5 1 1643948 6 0 Kosmotogaceae 2233 1 genus 695 0 1184396 1 species Mesotoga prima 695 0 1184387 1 3 genus 4 651456 1532 Kosmotoga 0 1330330 0 846 Kosmotoga pacifica species 1 species 1 0 682 Kosmotoga olearia 651457 44 1643947 12432 Petrotogales 0 8 1 order family 7 1643949 0 12388 1786 Petrotoga 0 1 28236 2 1 genus Petrotoga mobilis 1785 0 69499 1 species genus 1 2 0 3087 Defluviitoga 4 1511648 1 species 3083 Defluviitoga tunisiensis 0 1006576 genus 1 3 160798 58 0 Marinitoga 7515 2640159 0 3583 no rank 1 1 species 1545835 3583 Marinitoga sp. 1137 0 1 species Marinitoga piezophila 3874 0 149715 28 1 order Thermotogales 20703 0 2419 74 0 13788 Fervidobacteriaceae 1643950 25 family 1 10 10413 Thermosipho 0 69 2420 5 1 genus 4843 0 2676525 2 no rank 1462747 2406 Thermosipho sp. 1063 0 1 species 1 species 2437 Thermosipho sp. 1070 0 1437364 2984 Thermosipho africanus 0 2421 1 species 0 Thermosipho melanesiensis 2517 46541 species 1 3350 Fervidobacterium 0 17 2422 4 1 genus 1 species 93466 Fervidobacterium pennivorans 1315 0 species 1 0 Fervidobacterium nodosum 1475 2424 2423 0 Fervidobacterium islandicum 543 species 1 188709 20 Thermotogaceae 6841 0 17 1 family 1 11 genus 86 2335 3339 Thermotoga 0 1 species 319 Thermotoga neapolitana 0 2337 214 Thermotoga petrophila 0 93929 1 species Thermotoga maritima 273 0 2336 1 species 0 Thermotoga caldifontis 180 1508419 species 1 1 species 1156 Thermotoga profunda 0 1508420 93930 193 Thermotoga naphthophila 0 1 species no rank 4 0 918 2631113 1157947 173 Thermotoga sp. Cell2 0 1 species 0 Thermotoga sp. 2812B 254 1157948 species 1 126738 0 292 Thermotoga sp. RQ7 species 1 199 Thermotoga sp. RQ2 0 126740 1 species 3482 Pseudothermotoga 0 56 1643951 5 1 genus 1 species 181 Pseudothermotoga hypogea 0 57487 1 species 1142 Pseudothermotoga lettingae 0 177758 1 species Pseudothermotoga elfii 1169 0 38322 species 1 0 Pseudothermotoga thermarum 934 119394 1 0 0 name