members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 5121287 30 9270 4681 2 0 superkingdom Bacteria 5065984 1 4378 37 phylum 0 200783 23 5642 23 12 1 5642 Aquificae class 0 187857 0 32069 order 4834 Aquificales 18 9 1 1 233 no rank 0 90150 412592 0 genus 233 1 species 0 412593 1 233 Thermosulfidibacter takaii 224027 0 family 2282 4 519 1 0 182899 genus 309805 0 species Persephonella marina 519 1 genus 212790 0 1 11 3 Sulfurihydrogenibium 1763 2619248 0 no rank 997 1 species 0 436114 1 997 Sulfurihydrogenibium sp. YO3AOP1 309806 0 species Sulfurihydrogenibium azorense 755 1 family 0 64898 1 12 1 2310 Aquificaceae 939 0 genus 103 1 1 Hydrogenobacter thermophilus 103 species 940 0 118 1 2713 0 genus Aquifex aeolicus 118 1 63363 0 species 6 66 1 1848 Hydrogenobaculum genus 0 168657 5 1782 no rank 0 2622382 547145 0 species Hydrogenobaculum sp. SHO 369 1 547146 0 species Hydrogenobaculum sp. SN 369 1 369 Hydrogenobaculum sp. 3684 1 0 547143 species 1 Hydrogenobaculum sp. Y04AAS1 306 species 380749 0 Hydrogenobaculum sp. HO 369 1 547144 0 species 1 1 3 Thermocrinis 240 genus 75905 0 1 Thermocrinis ruber 121 species 75906 0 1 118 Thermocrinis albus species 0 136094 3 4 1 796 Desulfurobacteriales order 0 1485951 4 3 1 793 Desulfurobacteriaceae family 0 558314 171868 0 genus 83 1 Thermovibrio ammonificans 83 1 228745 0 species 1 706 genus 0 64159 1 Desulfurobacterium thermolithotrophum 706 species 64160 0 600 11 0 508458 phylum 649775 0 class Synergistia 600 1 11 5 10 6 1 595 Synergistales order 0 649776 family 649777 0 1 2 9 Synergistaceae 589 2 4 1 152 Aminobacterium genus 0 81466 1 148 Aminobacterium colombiense species 0 81468 1 93 genus 0 81461 81462 0 species Thermanaerovibrio acidaminovorans 93 1 1 98 genus 336260 0 0 336261 species 98 Thermovirga lienii 1 116 Cloacibacillus 1 2 1 0 508459 genus 1197717 0 species Cloacibacillus porcorum 115 1 49894 0 genus Acetomicrobium 128 1 1 2 species 97477 0 1 Acetomicrobium mobile 127 1645 3732921 clade 0 1783272 3241708 159 0 1798711 clade 0 1117 phylum 3241708 Cyanobacteria 159 19 1 order 1890505 0 1 4 6 Chroococcidiopsidales 1772 family 1890528 0 1 14 3 Chroococcidiopsidaceae 1766 0 54298 genus 1752 Chroococcidiopsis 4 2 1 0 54299 species 1748 Chroococcidiopsis thermalis 1 602 1 1983111 0 no rank 602 cyanobacterium endosymbiont of Epithemia turgida 1 0 718217 species class 0 307596 2 6 1 508 Gloeobacteria 506 Gloeobacterales 5 2 1 0 307595 order 4 17 1 504 Gloeobacteraceae family 0 1890422 genus 0 33071 7 3 1 487 Gloeobacter 1 Gloeobacter violaceus 232 species 33072 0 species 0 1416614 1 248 Gloeobacter kilaueensis Nostocales 30500 1 34 57 1161 0 order Hapalosiphonaceae 3563 1 3 7 1892263 0 family 0 1190 genus 3556 Fischerella 7 2 1 1 3549 no rank 0 494603 0 1752063 species 3549 Fischerella sp. NIES-3754 1 0 1162 family 15350 Nostocaceae 18 51 1 264688 0 genus Trichormus 1783 1 3 1 species 1164 0 1 Trichormus azollae 921 species 264691 0 1 Trichormus variabilis 861 0 1177 genus 9991 Nostoc 10 69 1 Nostoc flagelliforme 1758 1 1306274 0 species species 272131 0 1 Nostoc punctiforme 869 2593658 0 no rank 7295 7 1 Nostoc sp. CENA543 1001 species 1869241 0 species 0 1618022 1 915 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' Nostoc sp. PCC 7120 934 1 103690 0 species 1 1191 Nostoc sp. PCC 7524 species 0 28072 1064 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 0 1261031 species 1075 Nostoc sp. NIES-3756 1 0 1751286 species species 317936 0 1 Nostoc sp. PCC 7107 1115 0 1163 genus 3525 Anabaena 14 4 1 species 1165 0 1 Anabaena cylindrica 1212 2299 2 0 2619674 no rank 1130 Anabaena sp. 90 1 0 46234 species 1647413 0 species Anabaena sp. WA102 1169 1 no rank 1219117 0 1 1005 Nostocales cyanobacterium HT-58-2 1005 1 1940762 0 species family 2661849 0 8 8380 8 45 1 8380 Calothrix genus 0 1186 species 32054 0 1 Calothrix parietina 1159 6 7176 no rank 0 2619626 805 Calothrix sp. 336/3 1 0 1337936 species species 0 2005461 1 1184 Calothrix sp. NIES-4101 1954171 0 species Calothrix sp. NIES-2098 1331 1 1 955 Calothrix sp. PCC 7507 species 0 99598 Calothrix sp. NIES-3974 1416 1 2005462 0 species 1 1485 Calothrix sp. NIES-4071 species 0 2005469 2145 Rivulariaceae 3 31 1 0 1185 family 2 2 1 2114 Rivularia genus 0 373984 1 2112 no rank 2676603 0 373994 0 species Rivularia sp. PCC 7116 2112 1 1 59 161 Synechococcales 3050544 order 1890424 0 family 1890429 0 1 3 1 Acaryochloridaceae 1068 Acaryochloris 1067 1 4 2 155977 0 genus Acaryochloris marina 1063 1 155978 0 species family 0 1213 13 5 1 2744600 Prochloraceae genus 1218 0 1 134 4 Prochlorococcus 2744587 Prochlorococcus marinus 2096488 1 1219 0 species no rank 0 2627481 2 647965 3388 Prochlorococcus sp. MIT 0801 1 0 1501269 species species 0 1501268 1 644577 Prochlorococcus sp. MIT 0604 1 5 1 Merismopediaceae 1265 family 1890428 0 4 27 1 1264 Synechocystis genus 0 1142 no rank 0 2640012 3 1237 0 1147 species 717 Synechocystis sp. PCC 6714 1 1 260 Synechocystis sp. PCC 6803 species 0 1148 260 Synechocystis sp. IPPAS B-1465 1 0 2116702 species Pseudanabaenaceae 1120 1 3 3 1890436 0 family 1152 0 genus Pseudanabaena 1117 1 2 11 2593292 0 no rank 1106 1 1 Pseudanabaena sp. PCC 7367 1106 species 82654 0 1534 Leptolyngbyaceae 6 15 1 0 1890438 family 1519 Leptolyngbya 5 21 1 0 47251 genus 1182 3 0 2650499 no rank species 0 111781 1 561 Leptolyngbya sp. PCC 7376 1752064 0 species Leptolyngbya sp. NIES-3755 320 1 1 Leptolyngbya sp. O-77 301 species 1080068 0 316 Leptolyngbya boryana 1 0 1184 species 2 691 family 0 2303730 genus 170610 0 1 4 2 Halomicronema 691 species 1209493 0 1 Halomicronema hongdechloris 687 Synechococcaceae 300105 1 34 42 1890426 0 family 4 2 1 674 Dactylococcopsis genus 0 13034 0 292566 species 670 Dactylococcopsis salina 1 167375 0 genus Cyanobium 3027 1 56 3 species 59930 0 1 Cyanobium gracile 1460 no rank 0 2627006 1 1511 1 1511 Cyanobium sp. NIES-981 species 0 1851505 genus 146785 0 1 1 2 Thermosynechococcus 220 219 Thermosynechococcus elongatus 1 0 146786 species genus 1129 0 1 26 827 Synechococcus 296142 0 32046 species 206 Synechococcus elongatus 1 1 Synechococcus lividus 144 species 33070 0 2626047 0 no rank 294965 23 species 110662 0 1 Synechococcus sp. CC9605 6524 species 0 32049 1 174 Synechococcus sp. PCC 7002 0 321332 species 216 Synechococcus sp. JA-2-3B'a(2-13) 1 0 1916956 species 1033 Synechococcus sp. SynAce01 1 1 Synechococcus sp. WH 8103 110519 species 29410 0 1 110175 Synechococcus sp. WH 8102 species 0 84588 316278 0 species Synechococcus sp. RCC307 2015 1 species 0 1350461 1 200 Synechococcus sp. UTEX 2973 1 548 Synechococcus sp. CC9311 species 0 64471 1 179 Synechococcus sp. PCC 7117 species 0 195498 4345 Synechococcus sp. KORDI-52 1 0 585425 species Synechococcus sp. PCC 7502 549 1 1173263 0 species 1 Synechococcus sp. JA-3-3Ab 134 species 321327 0 374982 0 species Synechococcus sp. PCC 73109 190 1 1 Synechococcus sp. KORDI-100 13365 species 1280380 0 195253 0 species Synechococcus sp. PCC 6312 230 1 Synechococcus sp. WH 7803 2117 1 32051 0 species species 374981 0 1 Synechococcus sp. PCC 7003 209 0 585423 species 33279 Synechococcus sp. KORDI-49 1 1 154 Synechococcus sp. PCC 8807 species 0 195248 316279 0 species Synechococcus sp. CC9902 960 1 1 Synechococcus sp. WH 8109 7641 species 166314 0 1 Synechococcus sp. NIES-970 209 species 1827144 0 0 52604 order 3717 Pleurocapsales 4 8 1 0 1890500 family 668 Hyellaceae 3 13 1 1 2 1 655 Pleurocapsa genus 0 44474 1 654 Pleurocapsa minor species 0 54308 1890498 0 family Dermocarpellaceae 3045 1 4 15 3 18 1 3030 Stanieria genus 0 102115 1 1788 no rank 0 2642663 1807358 0 species Stanieria sp. NIES-3757 1788 1 species 0 102116 1 1224 Stanieria cyanosphaera 154046 46 1301283 0 subclass 25 32 1 19514 Chroococcales order 0 1118 family 0 1890464 42 7 1 8636 Chroococcaceae genus 0 268175 2 2 1 5154 Chondrocystis 5152 1 2648896 0 no rank 1 5152 Chondrocystis sp. NIES-4102 species 0 2005460 2788 Geminocystis 3 8 1 0 669357 genus 2780 2 2625037 0 no rank 1219 Geminocystis sp. NIES-3709 1 0 1617448 species 1615909 0 species Geminocystis sp. NIES-3708 1561 1 652 1 0 102231 genus 2623012 0 no rank 652 1 1 652 Gloeocapsa sp. PCC 7428 species 0 1173026 1 3 3 Cyanobacteriaceae 1215 family 1890452 0 0 102234 genus 1212 Cyanobacterium 3 2 1 1 1209 Cyanobacterium aponinum species 0 379064 1890449 0 family Microcystaceae 3539 1 4 12 0 1125 genus 3527 Microcystis 3 16 1 911 1 2643300 0 no rank 1 Microcystis sp. MC19 911 species 1967666 0 Microcystis aeruginosa 2600 1 1126 0 species 0 1890450 family 6092 Aphanothecaceae 9 10 1 2 2 1 846 Candidatus Atelocyanobacterium genus 0 1453359 0 713887 species 844 Candidatus Atelocyanobacterium thalassa 1 genus 0 2546365 2 1364 1364 2 2546366 0 species strain 395962 0 1 Cyanothece sp. PCC 8802 706 1 Cyanothece sp. PCC 8801 658 strain 41431 0 genus 28070 0 2 2465 1 1172 species 0 2546359 strain 497965 0 1 Cyanothece sp. PCC 7822 1172 1 1293 species 0 2546356 strain 0 65393 1 1293 Cyanothece sp. PCC 7424 genus 263510 0 1 883 1 883 species 0 2546360 883 Cyanothece sp. ATCC 51142 1 0 43989 strain 525 2 0 92682 no rank 2 2 1 525 Halothece genus 0 76023 no rank 2632878 0 1 523 523 Halothece sp. PCC 7418 1 0 65093 species 21 81 1 134532 Oscillatoriales order 0 1150 Coleofasciculaceae 290 1 9 3 1892251 0 family 63132 0 genus Geitlerinema 281 1 7 2 274 1 0 2648775 no rank 1 274 Geitlerinema sp. PCC 7407 species 0 1173025 0 1892249 family 381 Cyanothecaceae 39 3 1 342 Cyanothece 44 2 1 0 43988 genus no rank 0 2649277 1 298 species 395961 0 1 Cyanothece sp. PCC 7425 298 family 1892254 0 1 38 6 Oscillatoriaceae 7301 0 1155738 genus 5035 Moorea 8 2 1 species 1155739 0 1 Moorea producens 5027 genus 0 1158 3 10 1 2228 Oscillatoria Oscillatoria nigro-viridis 1088 1 482564 0 species 1 Oscillatoria acuminata 1130 species 118323 0 family 1892255 0 1 3 5 Gomontiellaceae 865 Crinalium 860 1 4 2 241421 0 genus 1 856 Crinalium epipsammum species 0 241425 family 1892252 0 1 22 5 Microcoleaceae 125614 1 7 2 Trichodesmium 125051 genus 1205 0 1 Trichodesmium erythraeum 125044 species 1206 0 44471 0 genus Microcoleus 541 1 7 2 1 534 no rank 2642155 0 0 1173027 species 534 Microcoleus sp. PCC 7113 1 34 4017 phylum 1297 0 4017 Deinococci 34 25 1 0 188787 class order 0 118964 15 31 1 1936 Deinococcales 1 14 14 Deinococcaceae 1905 family 183710 0 Deinococcus 1891 1 13 39 1298 0 genus Deinococcus maricopensis 156 1 309887 0 species species 68909 0 1 Deinococcus geothermalis 121 species 0 1768108 1 158 Deinococcus actinosclerus Deinococcus gobiensis 163 1 502394 0 species 0 310783 species 101 Deinococcus deserti 1 1309411 0 species Deinococcus soli Cha et al. 2016 162 1 1 Deinococcus swuensis 176 species 1182571 0 species 55148 0 1 Deinococcus proteolyticus 271 Deinococcus puniceus 152 1 1182568 0 species 1 143 no rank 0 2623546 143 Deinococcus sp. NW-56 1 0 2080419 species 1299 0 species Deinococcus radiodurans 144 1 Deinococcus peraridilitoris 105 1 432329 0 species order 0 68933 17 16 1 1854 Thermales 1 11 15 Thermaceae 1837 family 188786 0 192 1 0 208447 genus Oceanithermus profundus 192 1 187137 0 species 7 3 1 310 Meiothermus genus 0 65551 1 Meiothermus ruber 167 species 277 0 136 Meiothermus silvanus 1 0 52022 species 186191 0 genus Marinithermus 75 1 2 2 species 186192 0 1 Marinithermus hydrothermalis 73 270 0 genus Thermus 1249 1 3 8 1 101 Thermus scotoductus species 0 37636 167 Thermus oshimai 1 0 56957 species 1 Thermus brockianus 122 species 56956 0 1 146 Thermus parvatiensis species 0 456163 157 1 2619321 0 no rank species 0 1111069 1 157 Thermus sp. CCB_US3_UF1 370 Thermus thermophilus 1 0 274 species 0 271 species 183 Thermus aquaticus 1 202 2 0 2762275 order family 0 332247 2 202 332248 0 genus Truepera 202 1 4 2 0 332249 species 198 Truepera radiovictrix 1 Firmicutes 293931 1 68 681 1239 0 phylum 0 1676648 class 194 4 0 1676649 order 194 Limnochordales 4 4 1 0 1676650 family 190 Limnochordaceae 2 3 1 genus 1676651 0 1 8 2 Limnochorda 188 1555112 0 species Limnochorda pilosa 180 1 no rank 84086 0 1 879 1 endosymbiont 'TC1' of Trimyema compressum 879 species 243899 0 186801 0 class Clostridia 105742 1 194 105 1 9 11 Halanaerobiales 4033 order 53433 0 family 0 972 6 14 1 2709 Halanaerobiaceae 0 2330 genus 2199 Halanaerobium 13 3 1 species 656519 0 1 Halanaerobium hydrogeniformans 955 species 0 2331 1 1231 Halanaerobium praevalens 1 2 8 Halothermothrix 496 genus 32636 0 31909 0 species Halothermothrix orenii 488 1 Halobacteroidaceae 1315 1 4 7 53434 0 family 886 1 0 42417 genus 0 42422 species 886 Halobacteroides halobius 1 28186 0 genus Acetohalobium 422 1 1 2 species 28187 0 1 Acetohalobium arabaticum 421 order 2770089 0 3 513 373 1 2770092 0 family 373 1 499228 0 genus 499229 0 species Tepidanaerobacter acetatoxydans 373 1 0 2770093 family 140 2 Thermosediminibacter 140 1 1 2 291988 0 genus 0 291990 species 139 Thermosediminibacter oceani 1 5 4 1 552 Natranaerobiales order 0 485256 1 1 3 Natranaerobiaceae 547 family 485255 0 0 375928 genus 546 Natranaerobius 2 6 1 1 Natranaerobius thermophilus 540 species 375929 0 Thermoanaerobacterales 11723 1 12 34 68295 0 order 543372 0 family 132 2 genus 0 252965 2 1 1 132 Mahella Mahella australiensis 131 1 252966 0 species family 0 186814 21 17 1 5821 Thermoanaerobacteraceae 0 42857 no rank 218 3 genus 44260 0 1 153 species 1525 0 1 Moorella thermoacetica 153 1 1 2 Ammonifex 65 genus 42837 0 64 Ammonifex degensii 1 0 42838 species genus 0 1754 9 194 1 4735 Thermoanaerobacter species 0 46354 1 615 Thermoanaerobacter wiegelii 0 2636821 no rank 1182 2 1 594 Thermoanaerobacter sp. X513 species 0 573062 399726 0 species Thermoanaerobacter sp. X514 588 1 536 Thermoanaerobacter mathranii 1 0 583357 species species 29323 0 1 Thermoanaerobacter brockii 546 0 108150 species 569 Thermoanaerobacter italicus 1 0 2325 species 547 Thermoanaerobacter kivui 1 0 496866 species 546 Thermoanaerobacter pseudethanolicus 1 249529 0 genus Caldanaerobacter 495 1 2 1 1 494 Caldanaerobacter subterraneus species 0 911092 genus 140458 0 1 104 1 Thermacetogenium phaeum 104 species 85874 0 248 1 129957 0 genus 248 Carboxydothermus hydrogenoformans 1 0 129958 species family 227387 0 1 508 1 508 genus 0 227388 508 Thermodesulfobium narugense 1 0 184064 species 5250 Thermoanaerobacterales Family III. Incertae Sedis 13 7 1 0 543371 family 3890 Caldicellulosiruptor 60 9 1 0 44000 genus species 0 55205 1 425 Caldicellulosiruptor owensensis 0 52765 species 451 Caldicellulosiruptor kristjanssonii 1 1 Caldicellulosiruptor obsidiansis 440 species 717609 0 44001 0 species Caldicellulosiruptor saccharolyticus 489 1 413889 0 species Caldicellulosiruptor kronotskyensis 591 1 Caldicellulosiruptor bescii 486 1 31899 0 species 413888 0 species Caldicellulosiruptor hydrothermalis 532 1 species 0 52766 1 416 Caldicellulosiruptor lactoaceticus 28895 0 genus Thermoanaerobacterium 1353 1 3 4 461 Thermoanaerobacterium xylanolyticum 1 0 29329 species 1517 0 species Thermoanaerobacterium thermosaccharolyticum 888 1 1 141 190 Clostridiales 88816 order 186802 0 family 543349 0 2 192 2733 0 genus Symbiobacterium 192 1 2 3 0 2734 species 189 Symbiobacterium thermophilum 1 1 67 38 Clostridiaceae 61755 family 31979 0 49082 0 genus Candidatus Arthromitus 2262 1 12 4 0 2638829 no rank 2250 3 Candidatus Arthromitus sp. SFB-mouse 731 1 49118 0 species 746 Candidatus Arthromitus sp. SFB-mouse-NL 1 0 1508644 species 1 Candidatus Arthromitus sp. SFB-rat-Yit 773 species 1041504 0 genus 390805 0 1 521 species 1424294 0 1 Geosporobacter ferrireducens 521 Clostridium 57587 1 249 30 1485 0 genus Clostridium argentinense 1423 1 29341 0 species species 0 1538 1 1048 Clostridium ljungdahlii 0 1494 species 1080 Clostridium cochlearium 1 0 1548 species 1836 Clostridium scatologenes 1 species 1542 0 1 Clostridium novyi 996 1 Clostridium bornimense 1574 species 1216932 0 1509 0 species Clostridium sporogenes 1317 1 Clostridium tetani 1445 1 1513 0 species 1 3077 Clostridium beijerinckii species 0 1520 1561 0 species Clostridium baratii 2410 1 0 36745 species 2660 Clostridium saccharoperbutylacetonicum 1 species 1488 0 1 Clostridium acetobutylicum 1240 3405 Clostridium saccharobutylicum 1 0 169679 species 1 1216 Clostridium chauvoei species 0 46867 1 Clostridium autoethanogenum 997 species 84023 0 0 1497 species 787 Clostridium formicaceticum 1 1492 0 species Clostridium butyricum 2227 1 1 Clostridium pasteurianum 2827 species 1501 0 1385 Clostridium estertheticum 1 0 238834 species Clostridium aceticum 767 1 84022 0 species 1 1446 Clostridium taeniosporum species 0 394958 Clostridium perfringens 2666 1 1502 0 species 1 Clostridium botulinum 13424 species 1491 0 0 1519 species 925 Clostridium tyrobutyricum 1 1 Clostridium cellulovorans 1288 species 1493 0 no rank 2614128 0 2 571 1 82 Clostridium sp. SY8519 species 0 1042156 species 0 755731 1 489 Clostridium sp. BNL1100 1 1585 Clostridium kluyveri species 0 1534 1716 Clostridium carboxidivorans 1 0 217159 species 1318 2 0 114627 genus Alkaliphilus metalliredigens 854 1 208226 0 species Alkaliphilus oremlandii 464 1 461876 0 species 20 26 1 5506 Peptococcaceae family 0 186807 Dehalobacter 517 1 7 4 56112 0 genus 370 2 2635733 0 no rank species 0 1147129 1 186 Dehalobacter sp. DCA Dehalobacter sp. CF 184 1 1131462 0 species species 0 55583 1 140 Dehalobacter restrictus 51196 0 genus 197 1 197 Syntrophobotulus glycolicus 1 0 51197 species 0 79206 genus 1312 Desulfosporosinus 4 3 1 1 Desulfosporosinus orientis 402 species 1563 0 species 885581 0 1 Desulfosporosinus acidiphilus 493 species 79209 0 1 Desulfosporosinus meridiei 414 2282742 0 genus 318 1 318 Desulfotomaculum acetoxidans 1 0 58138 species 1 1 2 Thermincola 178 genus 278993 0 177 Thermincola potens 1 0 863643 species 1 386 genus 0 51514 1 Dehalobacterium formicoaceticum 386 species 51515 0 Desulfitobacterium 1102 1 5 9 36853 0 genus 49338 0 species Desulfitobacterium hafniense 285 1 species 0 36854 1 274 Desulfitobacterium dehalogenans 241 Desulfitobacterium metallireducens 1 0 142877 species 1 Desulfitobacterium dichloroeliminans 293 species 233055 0 1 402 genus 2282740 0 species 102134 0 1 Desulfotomaculum gibsoniae 402 1 129 genus 471826 0 471827 0 species Candidatus Desulforudis audaxviator 129 1 1 5 4 Desulfotomaculum 945 genus 1562 0 1 Desulfotomaculum reducens 336 species 59610 0 species 1564 0 1 Desulfotomaculum ruminis 207 Desulfotomaculum nigrificans 201 1 1565 0 species 197 Desulfotomaculum ferrireducens 1 0 1833852 species family 0 186803 22 13 1 8476 Lachnospiraceae 1111 Lachnoclostridium 10 4 1 0 1506553 genus 1 173 Lachnoclostridium phocaeense species 0 1871021 0 66219 species 664 Lachnoclostridium phytofermentans 1 0 2608895 no rank 264 1 Lachnoclostridium sp. YL32 264 1 1834196 0 species 435 1 207244 0 genus 1 435 Anaerostipes hadrus species 0 649756 genus 841 0 1 2 4 Roseburia 154 0 301301 species 150 Roseburia hominis 1 genus 698776 0 1 2121 2121 Cellulosilyticum lentocellum 1 0 29360 species 1 2 1 Anaerotignum 292 genus 2039240 0 species 28446 0 1 Anaerotignum propionicum 291 0 2719231 genus 260 1 species 0 84030 1 260 [Clostridium] saccharolyticum 1663717 0 genus 382 1 382 Herbinix luporum 1 0 1679721 species 426 2 186928 0 no rank species 0 39491 1 228 [Eubacterium] rectale 1 198 Lachnospiraceae bacterium oral taxon 500 species 0 712991 0 572511 genus 560 2 no rank 2648079 0 1 197 1796616 0 species Blautia sp. YL58 197 1 0 1322 species 363 Blautia hansenii 1 1 234 genus 0 2719313 species 0 208479 1 234 [Clostridium] bolteae genus 0 830 2 1079 1 461 Butyrivibrio hungatei species 0 185008 Butyrivibrio proteoclasticus 618 1 43305 0 species 831 1 0 2569097 genus 1 831 [Eubacterium] hallii species 0 39488 1 578 genus 0 28050 [Eubacterium] eligens 578 1 39485 0 species family 186804 0 1 15 9 Peptostreptococcaceae 5754 1 2 1 178 Peptoclostridium genus 0 1481960 1731 0 species Peptoclostridium acidaminophilum 177 1 186831 0 genus Acetoanaerobium 693 1 1 2 species 1511 0 1 Acetoanaerobium sticklandii 692 1356 1 0 1849828 genus Paeniclostridium sordellii 1356 1 1505 0 species 1 2725 genus 0 1870884 1 2725 Clostridioides difficile species 0 1496 456 1 1411023 0 no rank species 2081703 0 1 Peptostreptococcaceae bacterium oral taxon 929 456 genus 0 44259 1 331 species 143361 0 1 Filifactor alocis 331 96 1 990719 0 family 1 96 genus 0 990721 0 1805714 species 96 Christensenella massiliensis 1 family 31984 0 1 1 3 Heliobacteriaceae 108 Heliobacterium 107 1 2 4 2697 0 genus 1 Heliobacterium modesticaldum 103 species 35701 0 0 68298 family 315 Syntrophomonadaceae 1 3 1 97 1 0 129001 genus 0 86170 species 97 Syntrophothermus lipocalidus 1 genus 0 862 1 217 1 Syntrophomonas wolfei 217 species 863 0 1 6 10 Ruminococcaceae 1172 family 541000 0 475 2 1263 0 genus species 0 1264 1 259 Ruminococcus albus 1160721 0 species Ruminococcus bicirculans 216 1 no rank 0 2305133 1 97 1 Ruminococcaceae bacterium CPB6 97 species 1572656 0 946234 0 genus Flavonifractor 173 1 6 2 species 0 292800 1 167 Flavonifractor plautii no rank 552397 0 1 153 species 0 29343 1 153 [Clostridium] cellulosi 106 1 0 253238 genus 1 Ethanoligenens harbinense 106 species 253239 0 genus 216851 0 1 2 2 Faecalibacterium 162 853 0 species Faecalibacterium prausnitzii 160 1 3165 11 0 2304686 family 1535 3 2304692 0 genus 554 Herbivorax saccincola 1 0 1677857 species 1 357 Ruminiclostridium thermocellum species 0 1515 1 [Clostridium] clariflavum 624 species 288965 0 0 2304693 genus 345 1 345 [Clostridium] thermosuccinogenes 1 0 84032 species 81 1 2305130 0 no rank species 0 1834198 1 81 Ruminiclostridium sp. KB18 genus 0 1637257 1 147 species 884684 0 1 Mageeibacillus indolicus 147 0 236752 genus 403 Fastidiosipila 2 2 1 0 236753 species 401 Fastidiosipila sanguinis 1 474 Ruminiclostridium 9 2 1 0 1508657 genus 1521 0 species [Clostridium] cellulolyticum 465 1 2304691 0 genus 180 1 1510 0 species [Clostridium] stercorarium 180 1 968 Eubacteriaceae 1 4 1 0 186806 family 567 Eubacterium 2 4 1 0 1730 genus species 1736 0 1 Eubacterium limosum 563 1 400 genus 33951 0 species 33952 0 1 Acetobacterium woodii 400 family 216572 0 2 199 genus 0 459786 2 2 1 199 Oscillibacter species 351091 0 1 Oscillibacter valericigenes 197 no rank 538999 0 9 920 0 539000 family 155 Clostridiales Family XVII. Incertae Sedis 1 3 1 genus 73918 0 1 7 2 Thermaerobacter 154 0 73919 species 147 Thermaerobacter marianensis 1 0 543314 family 434 Clostridiales Family XIII. Incertae Sedis 3 2 1 205 1 86331 0 genus 0 114527 species 205 Mogibacterium diversum 1 1 [Eubacterium] sulci 227 species 143393 0 2717089 0 genus 197 1 1 Mordavella sp. Marseille-P3756 197 species 2086584 0 0 1392389 genus 134 Intestinimonas 2 2 1 species 0 1297617 1 132 Intestinimonas butyriciproducens 4137 Negativicutes 15 28 1 0 909932 class Selenomonadales 2558 1 13 11 909929 0 order 1843491 0 family Selenomonadaceae 1156 1 2 8 970 0 genus Selenomonas 584 1 11 6 0 971 species 145 Selenomonas ruminantium 1 no rank 2637378 0 3 321 1 Selenomonas sp. oral taxon 478 92 species 712538 0 species 0 1884263 1 82 Selenomonas sp. oral taxon 920 713030 0 species Selenomonas sp. oral taxon 136 147 1 species 0 69823 1 107 Selenomonas sputigena 158846 0 genus 570 1 1 570 Megamonas hypermegale species 0 158847 1391 Sporomusaceae 2 4 1 0 1843490 family Pelosinus 1389 1 3 8 365348 0 genus 0 2629460 no rank 693 1 species 0 484770 1 693 Pelosinus sp. UFO1 365349 0 species Pelosinus fermentans 688 1 1 4 1 276 Acidaminococcales order 0 1843488 0 909930 family 275 Acidaminococcaceae 2 3 1 0 904 genus 273 2 905 0 species Acidaminococcus fermentans 158 1 species 0 187327 1 115 Acidaminococcus intestini 10 12 1 1288 Veillonellales order 0 1843489 1 7 9 Veillonellaceae 1276 family 31977 0 245 Megasphaera 4 2 1 0 906 genus 1 241 Megasphaera elsdenii species 0 907 29465 0 genus Veillonella 560 1 3 3 species 29466 0 1 Veillonella parvula 408 149 Veillonella rodentium 1 0 248315 species 0 39948 genus 350 1 350 Dialister pneumosintes 1 0 39950 species genus 909928 0 1 2 2 Negativicoccus 114 1 112 Negativicoccus massiliensis species 0 1702287 4029 Tissierellia 17 5 1 0 1737404 class 3675 Tissierellales 26 14 1 0 1737405 order 3 1 1 926 Gottschalkiaceae family 0 2042895 925 Gottschalkia 2 2 1 0 1505664 genus Gottschalkia acidurici 923 1 1556 0 species 1 9 10 Peptoniphilaceae 2723 family 1570339 0 2 2 1 404 Peptoniphilus genus 0 162289 2637196 0 no rank 402 1 0 1912856 species 402 Peptoniphilus sp. ING2-D1G 1 Finegoldia 593 1 2 2 150022 0 genus Finegoldia magna 591 1 1260 0 species 2 3 1 821 Parvimonas genus 0 543311 1 818 Parvimonas micra species 0 33033 genus 0 165779 2 742 0 33034 species 361 Anaerococcus prevotii 1 species 0 1870984 1 381 Anaerococcus mediterraneensis genus 1161127 0 1 154 species 0 1852373 1 154 Murdochiella vaginalis 1737407 0 no rank 349 2 genus 1582879 0 1 4 2 Ezakiella 349 1 Ezakiella massiliensis 345 species 1852374 0 1299 Erysipelotrichia 9 1 1 0 526524 class Erysipelotrichales 1298 1 8 3 526525 0 order family 128827 0 1 6 7 Erysipelotrichaceae 1295 246 1 544447 0 no rank 246 Erysipelotrichaceae bacterium I46 1 0 1834207 species 0 191303 genus 442 1 no rank 2638206 0 1 442 species 0 1712675 1 442 Turicibacter sp. H121 0 1729679 genus 76 1 1 76 Faecalibaculum rodentium species 0 1702221 Erysipelothrix 525 1 1 3 1647 0 genus 1 Erysipelothrix rhusiopathiae 293 species 1648 0 species 1514105 0 1 Erysipelothrix larvae 231 class 0 91061 425 130 1 177502 Bacilli 124345 Bacillales 258 295 1 0 1385 order Bacillaceae 65202 1 88 115 186817 0 family 0 129337 genus 2814 Geobacillus 101 15 1 33940 0 species Geobacillus thermodenitrificans 286 1 0 1422 species 255 Geobacillus stearothermophilus 1 species 0 1921421 1 95 Geobacillus genomosp. 3 1110 6 2642459 0 no rank 1 Geobacillus sp. WCH70 318 species 471223 0 1 266 Geobacillus sp. C56-T3 species 0 691437 544556 0 species Geobacillus sp. Y412MC61 63 1 Geobacillus sp. Y412MC52 77 1 550542 0 species species 581103 0 1 Geobacillus sp. Y4.1MC1 317 1 Geobacillus sp. GHH01 69 species 1233873 0 0 1505648 species group 841 4 Geobacillus lituanicus 95 1 169283 0 species 33938 0 species Geobacillus thermocatenulatus 119 1 1 453 Geobacillus thermoleovorans species 0 33941 species 1462 0 1 Geobacillus kaustophilus 174 0 129338 species 126 Geobacillus subterraneus 1 1906945 0 genus 370 1 species 1426 0 1 Parageobacillus thermoglucosidasius 370 7 18 1 3477 Virgibacillus genus 0 84406 1 Virgibacillus necropolis 652 species 163877 0 1 504 Virgibacillus halodenitrificans species 0 1482 1 477 Virgibacillus phasianinus species 0 2017483 species 0 1473 1 696 Virgibacillus pantothenticus 2 1130 no rank 0 2620237 0 403957 species 495 Virgibacillus sp. SK37 1 Virgibacillus sp. 6R 635 1 1911587 0 species 1329200 0 genus Fictibacillus 726 1 1 3 species 1221500 0 1 Fictibacillus phosphorivorans 361 364 Fictibacillus arsenicus 1 0 255247 species 1 273 genus 0 175304 species 1472767 0 1 Lentibacillus amyloliquefaciens 273 1323 2 0 2675229 genus 1 1048 Bacillus simplex species 0 1478 1 Bacillus muralis 275 species 264697 0 1 58 685 Bacillus 43601 genus 1386 0 185979 0 no rank 3762 19 1 Bacillus sp. MD-5 124 species 2009331 0 species 1774743 0 1 Bacillus sp. SDLI1 125 563169 0 species Bacillus sp. SJ-10 82 1 Bacillus sp. H15-1 128 1 1856406 0 species 1 Bacillus sp. Lzh-5 49 species 2049935 0 1 516 Bacillus sp. IHB B 7164 species 0 1827146 1 118 Bacillus sp. JS species 0 1127744 Bacillus sp. (in: Bacteria) 75 1 1409 0 species 1 Bacillus sp. 1s-1 126 species 2026248 0 1446792 0 species Bacillus sp. Pc3 79 1 species 0 1837130 1 205 Bacillus sp. FJAT-14266 98228 0 species Bacillus sp. OxB-1 168 1 489 Bacillus sp. X1(2014) 1 0 1565991 species species 1941347 0 1 Bacillus sp. 275 74 species 0 1570330 1 38 Bacillus sp. BH072 96 Bacillus sp. LM 4-2 1 0 1628753 species 1574141 0 species Bacillus sp. YP1 112 1 666686 0 species Bacillus sp. 1NLA3E 763 1 0 756828 species 395 Bacillus sp. WP8 1 1664069 0 species Bacillus glycinifermentans 474 1 species group 0 653685 9 4838 3 1349 species subgroup 1938374 0 0 492670 species 597 Bacillus velezensis 1 1390 0 species Bacillus amyloliquefaciens 624 1 species 659243 0 1 Bacillus siamensis 128 1452 0 species Bacillus atrophaeus 600 1 Bacillus licheniformis 312 1 1402 0 species 1423 0 species Bacillus subtilis 2074 1 213 Bacillus sonorensis 1 0 119858 species 1648923 0 species Bacillus paralicheniformis 236 1 1 Bacillus vallismortis 54 species 72361 0 Bacillus horikoshii 362 1 79883 0 species species 1408 0 1 Bacillus pumilus 1341 1 Bacillus xiamenensis 300 species 1178537 0 species 632773 0 1 Bacillus beveridgei 188 1792192 0 species group 363 1 Bacillus altitudinis 363 1 293387 0 species 0 86661 species group 21692 10 1 7930 Bacillus thuringiensis species 0 1428 species 1405 0 1 Bacillus mycoides 2217 Bacillus cereus 7470 1 1396 0 species 155322 0 species Bacillus toyonensis 449 1 no rank 2750818 0 3 1458 444 Bacillus sp. HBCD-sjtu 1 0 2053832 species Bacillus sp. ABP14 415 1 1892404 0 species species 1839798 0 1 Bacillus sp. FDAARGOS_235 599 569 Bacillus cytotoxicus 1 0 580165 species 1392 0 species Bacillus anthracis 1055 1 1 544 Bacillus bombysepticus species 0 658666 1471 0 species Bacillus methanolicus 646 1 1 Bacillus aryabhattai 514 species 412384 0 species 324767 0 1 Bacillus infantis 207 1 Bacillus weihaiensis 702 species 1547283 0 Bacillus coagulans 443 1 1398 0 species 713 Bacillus cellulosilyticus 1 0 1413 species species 561879 0 1 Bacillus safensis 788 Bacillus endophyticus 806 1 135735 0 species 1 Bacillus cohnii 1009 species 33932 0 1 Bacillus gibsonii 105 species 79881 0 86664 0 species Bacillus flexus 788 1 2620 Bacillus megaterium 1 0 1404 species Bacillus smithii 255 1 1479 0 species genus 0 29331 3 2 1 524 Amphibacillus 1449 0 species Amphibacillus xylanus 521 1 2 618 genus 45667 0 1 Halobacillus mangrovi 325 species 402384 0 Halobacillus halophilus 293 1 1570 0 species Oceanobacillus 1199 1 3 2 182709 0 genus 1196 Oceanobacillus iheyensis 1 0 182710 species genus 1055323 0 1 398 species 33936 0 1 Aeribacillus pallidus 398 genus 0 459532 1 241 241 Terribacillus aidingensis 1 0 586416 species 9 6 1 2344 Anoxybacillus genus 0 150247 species 0 198467 1 415 Anoxybacillus gonensis 33934 0 species Anoxybacillus flavithermus 579 1 1 428 Anoxybacillus amylolyticus species 0 294699 913 2 0 2639704 no rank 1 437 Anoxybacillus sp. B2M1 species 0 1490052 1490057 0 species Anoxybacillus sp. B7M1 476 1 1 118 genus 0 351195 Salimicrobium jeotgali 118 1 1230341 0 species 2432 5 2675234 0 genus 199441 0 species Bacillus krulwichiae 686 1 1 483 Bacillus lehensis species 0 300825 species 0 79880 1 505 Bacillus clausii 1 524 Bacillus pseudofirmus species 0 79885 0 86665 species 234 Bacillus halodurans 1 Lysinibacillus 3469 1 5 19 400634 0 genus Lysinibacillus varians 605 1 1145276 0 species species 1421 0 1 Lysinibacillus sphaericus 1654 1 516 Lysinibacillus fusiformis species 0 28031 1 675 no rank 2636778 0 1 Lysinibacillus sp. YS11 675 species 2072025 0 genus 0 2675230 2 1187 436 Bacillus oceanisediminis 1 0 665099 species 1 751 Bacillus kochii species 0 859143 1 6 8 Listeriaceae 3888 family 186820 0 429 1 2755 0 genus 0 2756 species 429 Brochothrix thermosphacta 1 genus 1637 0 1 6 38 Listeria 3453 1 Listeria innocua 414 species 1642 0 1639 0 species Listeria monocytogenes 1402 1 species 1640 0 1 Listeria seeligeri 411 429 Listeria welshimeri 1 0 1643 species 1 759 Listeria ivanovii species 0 1638 family 0 186821 1 201 663587 0 no rank 201 1 species 85683 0 1 [Bacillus] selenitireducens 201 539002 0 no rank 1414 9 no rank 0 539742 7 972 Exiguobacterium 972 1 7 10 33986 0 genus 126 Exiguobacterium antarcticum 1 0 132920 species 692 4 0 2644629 no rank 1 99 Exiguobacterium sp. MH3 species 0 1399115 species 360911 0 1 Exiguobacterium sp. AT1b 140 1224749 0 species Exiguobacterium sp. ZWU0009 230 1 species 0 1849031 1 223 Exiguobacterium sp. U13-1 1 Exiguobacterium sibiricum 144 species 332410 0 2 442 no rank 539738 0 442 Gemella 2 2 1 0 1378 genus 0 2624949 no rank 440 1 0 1785995 species 440 Gemella sp. oral taxon 928 1 122 Thermoactinomycetaceae 2 3 1 0 186824 family 2 1 1 120 Novibacillus genus 0 1677050 1 Novibacillus thermophilus 119 species 1471761 0 family 186823 0 1 8 3 Alicyclobacillaceae 1000 29330 0 genus 178 1 0 405212 species 178 Alicyclobacillus acidocaldarius 1 0 1129704 genus 268 Kyrpidia 1 3 1 species 33943 0 1 Kyrpidia tusciae 129 138 Kyrpidia sp. EA-1 1 0 2055160 species 432330 0 genus Tumebacillus 551 1 1 3 97 Tumebacillus algifaecis 1 0 1214604 species 1 Tumebacillus avium 453 species 1903704 0 Paenibacillaceae 20220 1 45 16 186822 0 family 3 428 no rank 85151 0 0 55079 genus 428 Aneurinibacillus 5 3 1 1 199 no rank 0 2642329 species 0 1450761 1 199 Aneurinibacillus sp. XH2 1500254 0 species Aneurinibacillus soli 224 1 1 36 47 Paenibacillus 17919 genus 44249 0 206 Paenibacillus yonginensis 1 0 1462996 species 1 Paenibacillus peoriae 480 species 59893 0 1 Paenibacillus xylanexedens 285 species 528191 0 species 0 162209 1 143 Paenibacillus naphthalenovorans Paenibacillus bovis 596 1 1616788 0 species species 0 172713 1 234 Paenibacillus kribbensis 0 1126833 species 209 Paenibacillus beijingensis 1 296 Paenibacillus ihbetae 1 0 1870820 species 61624 0 species Paenibacillus mucilaginosus 468 1 Paenibacillus graminis 525 1 189425 0 species 1292 Paenibacillus donghaensis 1 0 414771 species 0 189426 species 526 Paenibacillus odorifer 1 1 Paenibacillus crassostreae 377 species 1763538 0 0 44251 species 953 Paenibacillus durus 1 160799 0 species Paenibacillus borealis 322 1 2838 Paenibacillus polymyxa 1 0 1406 species species 0 169760 1 125 Paenibacillus stellifer 6619 13 185978 0 no rank 506 Paenibacillus sp. BIHB4019 1 0 1870819 species 1 Paenibacillus sp. FSL H7-0737 413 species 1536775 0 species 1536770 0 1 Paenibacillus sp. FSL R5-0345 1037 1 290 Paenibacillus sp. FSL R5-0912 species 0 1536771 1 274 Paenibacillus sp. lzh-N1 species 0 2069255 Paenibacillus sp. FSL R7-0331 236 1 1536773 0 species 1 Paenibacillus sp. IHBB 10380 1949 species 1566358 0 species 324057 0 1 Paenibacillus sp. JDR-2 177 1536772 0 species Paenibacillus sp. FSL R7-0273 230 1 399 Paenibacillus sp. FSL H7-0357 1 0 1536774 species species 481743 0 1 Paenibacillus sp. Y412MC10 172 1 Paenibacillus sp. FSL P4-0081 722 species 1536769 0 Paenibacillus sp. 32O-W 214 1 1695218 0 species species 1178515 0 1 Paenibacillus swuensis 210 1464 0 species Paenibacillus larvae 480 1 333 1 0 2044880 species group 333 Paenibacillus riograndensis 1 0 483937 species 209 Paenibacillus terrae 1 0 159743 species Paenibacillus sabinae 146 1 365617 0 species 1 4 4 Brevibacillus 1652 genus 55080 0 54913 0 species Brevibacillus formosus 335 1 1393 0 species Brevibacillus brevis 502 1 Brevibacillus laterosporus 811 1 1465 0 species genus 0 76632 1 205 377615 0 species Thermobacillus composti 205 1 family 90964 0 1 42 45 Staphylococcaceae 23864 genus 0 69965 8 4 1 1228 Macrococcus 1 500 no rank 0 2619255 1 500 Macrococcus sp. IME1552 species 0 1898474 Macrococcus caseolyticus 367 1 69966 0 species species 0 1855823 1 353 Macrococcus canis genus 0 45669 2 1 1 168 Salinicoccus species 407035 0 1 Salinicoccus halodurans 167 22027 Staphylococcus 179 33 1 0 1279 genus 401 Staphylococcus felis 1 0 46127 species Staphylococcus simulans 448 1 1286 0 species species 1281 0 1 Staphylococcus carnosus 546 70258 0 species Staphylococcus piscifermentans 351 1 1 1034 Staphylococcus equorum species 0 246432 species 0 170573 1 223 Staphylococcus pettenkoferi 1 588 Staphylococcus condimenti species 0 70255 0 61015 species 572 Staphylococcus succinus 1 1 Staphylococcus cohnii 666 species 29382 0 1 2236 Staphylococcus aureus species 0 1280 1 529 Staphylococcus kloosii species 0 29384 1 Staphylococcus argenteus 710 species 985002 0 species 0 1292 1 657 Staphylococcus warneri 1 247 Staphylococcus muscae species 0 1294 1 Staphylococcus epidermidis 1384 species 1282 0 1283 0 species Staphylococcus haemolyticus 680 1 369 Staphylococcus hyicus 1 0 1284 species 669 Staphylococcus saprophyticus 1 0 29385 species 1 492 Staphylococcus pseudintermedius species 0 283734 411 Staphylococcus agnetis 1 0 985762 species 1 Staphylococcus capitis 671 species 29388 0 species 1290 0 1 Staphylococcus hominis 667 Staphylococcus sciuri 762 1 1296 0 species 643214 0 species Staphylococcus stepanovicii 629 1 1 Staphylococcus lugdunensis 612 species 28035 0 91994 0 no rank 597 1 0 1715860 species 597 Staphylococcus sp. AntiMn-1 1 Staphylococcus lutrae 363 1 155085 0 species 1288 0 species Staphylococcus xylosus 1084 1 308354 0 species Staphylococcus simiae 659 1 1 534 Staphylococcus schleiferi species 0 1295 species 0 45972 1 1488 Staphylococcus pasteuri Staphylococcus nepalensis 569 1 214473 0 species 2 2 1 396 Auricoccucs genus 0 2005363 species 1849491 0 1 Auricoccus indicus 394 Planococcaceae 8139 1 26 13 186818 0 family Solibacillus 1273 1 3 15 648800 0 genus no rank 0 2637870 1 605 0 2048654 species 605 Solibacillus sp. R5-41 1 76853 0 species Solibacillus silvestris 653 1 22 5 1 2057 Sporosarcina genus 0 1569 species 0 1476 1 614 Sporosarcina psychrophila 0 1571 species 1040 Sporosarcina ureae 1 2 381 no rank 0 2647733 0 1930546 species 179 Sporosarcina sp. P37 1 0 1930764 species 202 Sporosarcina sp. P33 1 648802 0 genus 428 1 241244 0 species Rummeliibacillus stabekisii 428 1 genus 1372 0 1 41 12 Planococcus 3573 Planococcus faecalis 390 1 1598147 0 species species 1302659 0 1 Planococcus sp. L10.15 418 0 161360 species 261 Planococcus antarcticus 1 species 200991 0 1 Planococcus rifietoensis 172 432 Planococcus halocryophilus 1 0 1215089 species 397 Planococcus kocurii 1 0 1374 species 643 2 2662419 0 no rank species 2058136 0 1 Planococcus sp. MB-3u-03 279 1526927 0 species Planococcus sp. PAMC 21323 364 1 373 Planococcus donghaensis 1 0 414778 species 112 Planococcus plakortidis 1 0 1038856 species 334 Planococcus maritimus 1 0 192421 species genus 0 157226 2 2 1 342 Jeotgalibacillus species 0 1508404 1 340 Jeotgalibacillus malaysiensis genus 1649 0 1 3 2 Kurthia 453 no rank 0 2644826 1 450 1 Kurthia sp. 11kri321 450 species 1750719 0 1 131 166 Lactobacillales 53027 order 186826 0 400 1 0 263855 no rank Lactobacillales bacterium 400 1 1993866 0 species family 0 81850 18 10 1 3849 Leuconostocaceae 0 1243 genus 2454 Leuconostoc 12 9 1 species 1246 0 1 Leuconostoc lactis 110 1 637 Leuconostoc mesenteroides species 0 1245 1 237 no rank 2685106 0 237 Leuconostoc sp. C2 1 0 979982 species 1 Leuconostoc citreum 195 species 33964 0 1 Leuconostoc kimchii 232 species 136609 0 species 1252 0 1 Leuconostoc carnosum 326 1244 0 species Leuconostoc gelidum 588 1 1 Leuconostoc garlicum 117 species 255248 0 46254 0 genus Oenococcus 284 1 2 1 species 1247 0 1 Oenococcus oeni 283 Weissella 1101 1 6 5 46255 0 genus 204 Weissella cibaria 1 0 137591 species 165096 0 species Weissella koreensis 305 1 species 0 759620 1 120 Weissella ceti 1 Weissella jogaejeotgali 244 species 1631871 0 223 Weissella paramesenteroides 1 0 1249 species Streptococcaceae 17774 1 20 49 1300 0 family 1357 0 genus Lactococcus 4001 1 5 4 196 Lactococcus raffinolactis 1 0 1366 species 1 Lactococcus lactis 2949 species 1358 0 1364 0 species Lactococcus piscium 437 1 species 0 1363 1 415 Lactococcus garvieae 0 1301 genus 13753 Streptococcus 43 144 1 species 1313 0 1 Streptococcus pneumoniae 625 species 59310 0 1 Streptococcus macedonicus 284 Streptococcus parauberis 422 1 1348 0 species 1 170 Streptococcus acidominimus species 0 1326 1214 3 671232 0 species group species 0 1338 1 485 Streptococcus intermedius 1 204 Streptococcus constellatus species 0 76860 species 1328 0 1 Streptococcus anginosus 525 1 Streptococcus oralis 404 species 1303 0 0 257758 species 189 Streptococcus pseudopneumoniae 1 species 0 1346 1 321 Streptococcus iniae 1 379 Streptococcus thermophilus species 0 1308 Streptococcus pasteurianus 276 1 197614 0 species 894 Streptococcus suis 1 0 1307 species Streptococcus sanguinis 147 1 1305 0 species species group 119603 0 2 679 1 Streptococcus dysgalactiae 263 species 1334 0 Streptococcus equi 416 1 1336 0 species 0 1825069 species 166 Streptococcus marmotae 1 0 45634 species 170 Streptococcus cristatus 1 0 1309 species 477 Streptococcus mutans 1 1 Streptococcus mitis 431 species 28037 0 629 Streptococcus agalactiae 1 0 1311 species 373 Streptococcus infantarius 1 0 102684 species 1 Streptococcus pantholopis 176 species 1811193 0 0 1349 species 315 Streptococcus uberis 1 2608887 0 no rank 1160 7 322 Streptococcus sp. 'group B' 1 0 1319 species 120 Streptococcus sp. NPS 308 1 0 1902136 species 1 Streptococcus sp. FDAARGOS_192 184 species 1839799 0 species 0 1156433 1 128 Streptococcus sp. I-P16 712633 0 species Streptococcus sp. oral taxon 431 125 1 0 1156431 species 116 Streptococcus sp. I-G2 1 1 Streptococcus sp. A12 165 species 1759399 0 species 1314 0 1 Streptococcus pyogenes 726 525 Streptococcus gordonii 1 0 1302 species 1 171 Streptococcus halotolerans species 0 1814128 1335 0 species Streptococcus equinus 181 1 266 Streptococcus lutetiensis 1 0 150055 species 0 1318 species 202 Streptococcus parasanguinis 1 0 1888195 species 107 Streptococcus himalayensis 1 1 583 Streptococcus salivarius species 0 1304 82348 0 species Streptococcus pluranimalium 185 1 species 400065 0 1 Streptococcus merionis 183 species 0 315405 1 579 Streptococcus gallolyticus 1 17 20 Enterococcaceae 6705 family 81852 0 0 51668 genus 587 Tetragenococcus 2 4 1 583 Tetragenococcus halophilus 1 0 51669 species 0 2737 genus 892 Vagococcus 3 1 1 Vagococcus penaei 410 1 633807 0 species 481 Vagococcus teuberi 1 0 519472 species genus 33969 0 1 3 2 Melissococcus 657 33970 0 species Melissococcus plutonius 654 1 22 12 1 4552 Enterococcus genus 0 1350 436 Enterococcus thailandicus 1 0 417368 species 400 Enterococcus hirae 1 0 1354 species 0 53345 species 335 Enterococcus durans 1 Enterococcus faecalis 713 1 1351 0 species no rank 2608891 0 3 759 Enterococcus sp. FDAARGOS_163 234 1 2060306 0 species 2060307 0 species Enterococcus sp. FDAARGOS_375 272 1 1 Enterococcus sp. CR-Ec1 253 species 2057791 0 species 0 2005703 1 381 Enterococcus wangshanyuanii 1 809 Enterococcus faecium species 0 1352 1 Enterococcus mundtii 447 species 53346 0 species 0 37734 1 250 Enterococcus casseliflavus family 33958 0 1 58 25 Lactobacillaceae 19354 770 2 0 2767881 genus 1 Lactobacillus lindneri 442 species 53444 0 Lactobacillus sanfranciscensis 328 1 1625 0 species 400 3 0 2767886 genus 1 233 Lactobacillus brevis species 0 1580 267363 0 species Lactobacillus zymae 65 1 1 102 Lactobacillus koreensis species 0 637971 2759736 0 genus 1057 3 1582 0 species Lactobacillus casei 382 1 species 0 47715 1 399 Lactobacillus rhamnosus 1597 0 species Lactobacillus paracasei 276 1 2 584 genus 2767889 0 1 Lactobacillus backii 363 species 375175 0 Lactobacillus coryniformis 221 1 1610 0 species 159 1 2767877 0 genus 159 Lactobacillus kunkeei 1 0 148814 species 2767892 0 genus 278 1 1 Lactobacillus paracollinoides 278 species 240427 0 564 3 0 2767893 genus 1 176 Lactobacillus buchneri species 0 1581 0 152331 species 143 Lactobacillus parabuchneri 1 245 Lactobacillus curieae 1 0 1138822 species genus 2767879 0 6 2189 1612 0 species Lactobacillus farciminis 334 1 species 1602 0 1 Lactobacillus alimentarius 367 1 Lactobacillus allii 412 species 1847728 0 species 0 1074467 1 301 Lactobacillus heilongjiangensis 1 Lactobacillus ginsenosidimutans 389 species 1007676 0 1 Lactobacillus crustorum 386 species 392416 0 2767887 0 genus 1663 4 species 0 1624 1 1099 Lactobacillus salivarius 89059 0 species Lactobacillus acidipiscis 259 1 0 1623 species 152 Lactobacillus ruminis 1 1 Lactobacillus agilis 153 species 1601 0 1722 Pediococcus 6 7 1 0 1253 genus Pediococcus inopinatus 264 1 114090 0 species species 0 51663 1 299 Pediococcus damnosus 0 187452 species 499 Pediococcus claussenii 1 0 1255 species 458 Pediococcus pentosaceus 1 195 1 0 1670797 species group species 0 1254 1 195 Pediococcus acidilactici 1776 3 2767842 0 genus 1463 Lactobacillus plantarum 1 0 1590 species species 60520 0 1 Lactobacillus paraplantarum 137 1 Lactobacillus pentosus 176 species 1589 0 2 593 genus 0 2767885 0 28038 species 203 Lactobacillus curvatus 1 species 0 1599 1 390 Lactobacillus sakei genus 0 2742598 3 1096 species 1598 0 1 Lactobacillus reuteri 717 97478 0 species Lactobacillus mucosae 194 1 Lactobacillus fermentum 185 1 1613 0 species Lactobacillus 6045 1 146 16 1578 0 genus 83683 0 species Lactobacillus amylolyticus 178 1 1 Lactobacillus helveticus 662 species 1587 0 1 696 Lactobacillus gasseri species 0 1596 52242 0 species Lactobacillus gallinarum 268 1 species 0 1584 1 589 Lactobacillus delbrueckii 1 Lactobacillus jensenii 363 species 109790 0 267818 0 species Lactobacillus kefiranofaciens 308 1 33959 0 species Lactobacillus johnsonii 788 1 0 2620435 no rank 1061 4 0 2099789 species 197 Lactobacillus sp. CBA3606 1 1 Lactobacillus sp. D1501 168 species 2108362 0 357 Lactobacillus sp. wkB8 1 0 1545702 species 0 2099788 species 339 Lactobacillus sp. CBA3605 1 0 1604 species 327 Lactobacillus amylovorus 1 1 320 Lactobacillus acetotolerans species 0 1600 0 1579 species 339 Lactobacillus acidophilus 1 311 1 0 2767890 genus Lactobacillus hokkaidonensis 311 1 1193095 0 species 1 122 genus 2767876 0 1 Lactobacillus amylophilus 122 species 1603 0 3575 Carnobacteriaceae 18 11 1 0 186828 family genus 0 191769 2 1 1 738 Marinilactibacillus 2632303 0 no rank 737 1 1911586 0 species Marinilactibacillus sp. 15R 737 1 2747 0 genus Carnobacterium 2210 1 9 5 743 2 0 257487 no rank species 208596 0 1 Carnobacterium sp. 17-4 411 species 1564681 0 1 Carnobacterium sp. CP1 332 species 0 147709 1 376 Carnobacterium inhibens Carnobacterium maltaromaticum 1082 1 2751 0 species genus 0 1470540 4 3 1 609 Jeotgalibaca no rank 0 2621505 1 331 0 1903686 species 331 Jeotgalibaca sp. PTS2502 1 708126 0 species Jeotgalibaca dankookensis 274 1 0 186827 family 1239 Aerococcaceae 1 8 1 1238 Aerococcus 11 7 1 0 1375 genus 1 Aerococcus viridans 213 species 1377 0 1376 0 species Aerococcus urinae 215 1 Aerococcus urinaehominis 168 1 128944 0 species 286 Aerococcus urinaeequi 1 0 51665 species Aerococcus sanguinicola 117 1 119206 0 species species 87541 0 1 Aerococcus christensenii 228 81 2 0 33974 no rank genus 1930845 0 1 2 2 Ndongobacter 81 species 0 1871025 1 79 Ndongobacter massiliensis Actinobacteria 151908 1 8 630 201174 0 phylum 1752188 0 no rank 713 4 234 Actinobacteria bacterium IMCC26103 1 0 1848756 species Actinobacteria bacterium IMCC19121 231 1 1848754 0 species species 1848755 0 1 Actinobacteria bacterium IMCC26077 149 Actinobacteria bacterium IMCC25003 99 1 1848255 0 species 2 5 1 2459 Thermoleophilia class 0 1497346 0 588673 order 2457 Solirubrobacterales 4 9 1 2448 Conexibacteraceae 1 3 1 0 320583 family genus 0 191494 2 3 1 2447 Conexibacter 1 Conexibacter woesei 2444 species 191495 0 1 4 7 Acidimicrobiia 862 class 84992 0 0 84993 order 858 Acidimicrobiales 17 6 1 2 648 family 2448023 0 Ilumatobacter 648 1 3 2 682522 0 genus 645 Ilumatobacter coccineus 1 0 467094 species 84994 0 family Acidimicrobiaceae 193 1 3 5 2 8 1 188 Acidimicrobium genus 0 53634 0 53635 species 180 Acidimicrobium ferrooxidans 1 class 84998 0 1 16 31 Coriobacteriia 2243 0 1643822 order 1378 Eggerthellales 16 4 1 1643826 0 family Eggerthellaceae 1374 1 15 21 341 Eggerthella 3 5 1 0 84111 genus 0 84112 species 232 Eggerthella lenta 1 2648737 0 no rank 104 1 502558 0 species Eggerthella sp. YY7918 104 1 128 1 0 447020 genus 1 128 Adlercreutzia equolifaciens species 0 446660 genus 84162 0 1 2 2 Cryptobacterium 94 species 0 84163 1 92 Cryptobacterium curtum 1 2 1 Phoenicibacter 171 genus 1981050 0 0 1944646 species 170 Phoenicibacter massiliensis 1 0 84108 genus 95 1 1 95 Slackia heliotrinireducens species 0 84110 0 644652 genus 401 Gordonibacter 8 3 1 Gordonibacter massiliensis 210 1 1841863 0 species species 0 1335613 1 183 Gordonibacter urolithinfaciens 1 2 1 Denitrobacterium 123 genus 79603 0 79604 0 species Denitrobacterium detoxificans 122 1 849 Coriobacteriales 14 5 1 0 84999 order 6 3 1 288 Coriobacteriaceae family 0 84107 2 6 1 92 Coriobacterium genus 0 33870 Coriobacterium glomerans 86 1 33871 0 species 84113 0 no rank 98 1 0 1531429 species 98 Coriobacteriaceae bacterium 68-1-3 1 genus 0 102106 2 2 1 95 Collinsella 93 Collinsella aerofaciens 1 0 74426 species 1 5 7 Atopobiaceae 556 family 1643824 0 1 6 Atopobium genus 0 1380 401 Olsenella 4 4 1 0 133925 genus 180 1 0 2638792 no rank 0 712411 species 180 Olsenella sp. oral taxon 807 1 1805478 0 species Olsenella sp. Marseille-P2300 140 1 133926 0 species Olsenella uli 77 1 1 144 genus 2767353 0 species 1382 0 1 Atopobium parvulum 144 145291 Actinobacteria 514 576 1 0 1760 class Frankiales 3114 1 35 7 85013 0 order 74712 0 family Frankiaceae 3079 1 19 6 1 5 12 Frankia 3060 genus 1854 0 2632575 0 no rank 488 1 species 0 298653 1 488 Frankia sp. EAN1pec 0 298654 species 430 Frankia inefficax 1 1 Frankia casuarinae 520 species 106370 0 0 1859 species 1610 Frankia alni 1 0 2037 order 1747 Actinomycetales 2 18 1 1745 Actinomycetaceae 17 13 1 0 2049 family 1654 0 genus Actinomyces 1174 1 9 40 61 Actinomyces sp. VUL4_3 1 0 1912795 species 217 Actinomyces radicidentis 1 0 111015 species 0 1852377 species 32 Actinomyces pacaensis 1 148 Actinomyces oris 1 0 544580 species 3 536 no rank 0 2609248 1 Actinomyces sp. Chiba101 177 species 1851395 0 1 210 Actinomyces sp. oral taxon 414 species 0 712122 0 2081702 species 149 Actinomyces sp. oral taxon 897 1 Actinomyces gaoshouyii 140 1 1960083 0 species 1 2 1 140 Trueperella genus 0 1069494 139 Trueperella pyogenes 1 0 1661 species genus 2050 0 1 149 species 2051 0 1 Mobiluncus curtisii 149 genus 2529408 0 1 90 0 52773 species 90 Actinomyces meyeri 1 genus 0 1653174 1 96 0 59505 species 96 Actinotignum schaalii 1 genus 0 28263 2 1 1 83 Arcanobacterium 1 82 Arcanobacterium haemolyticum species 0 28264 52018 0 no rank 196 1 196 Actinobacteria bacterium IMCC26256 1 0 1650658 species 7 12 1 2678 Candidatus Nanopelagicales order 0 2039638 2162846 0 family 2671 11 0 2039639 genus 1340 Candidatus Nanopelagicus 4 11 1 1884915 0 species Candidatus Nanopelagicus hibericus 437 1 species 1884916 0 1 Candidatus Nanopelagicus abundans 489 Candidatus Nanopelagicus limnes 403 1 1884634 0 species 1331 Candidatus Planktophila 7 10 1 0 622681 genus 1 Candidatus Planktophila versatilis 228 species 1884905 0 1 Candidatus Planktophila dulcis 278 species 1884914 0 Candidatus Planktophila limnetica 250 1 573600 0 species Candidatus Planktophila sulfonica 99 1 1884904 0 species 1 Candidatus Planktophila lacus 274 species 1884913 0 species 1884907 0 1 Candidatus Planktophila vernalis 192 40 20 1 10794 Pseudonocardiales order 0 85010 family 0 2070 39 85 1 10774 Pseudonocardiaceae genus 0 43356 2 11 1 366 Kutzneria 1 355 Kutzneria albida species 0 43357 1 3 2 Saccharopolyspora 359 genus 1835 0 0 1836 species 356 Saccharopolyspora erythraea 1 1 7 3 Actinosynnema 912 genus 40566 0 0 40567 species 478 Actinosynnema mirum 1 427 Actinosynnema pretiosum 1 0 42197 species 1 53 8 Pseudonocardia 2768 genus 1847 0 1 410 Pseudonocardia dioxanivorans species 0 240495 no rank 0 2619320 6 2305 1641402 0 species Pseudonocardia sp. HH130629-09 342 1 0 1690815 species 422 Pseudonocardia sp. HH130630-07 1 species 1688404 0 1 Pseudonocardia sp. EC080610-09 436 Pseudonocardia sp. EC080625-04 329 1 1096868 0 species Pseudonocardia sp. AL041005-10 391 1 445576 0 species 1 Pseudonocardia sp. EC080619-01 385 species 1096856 0 genus 0 142577 2 1 1 241 Prauserella 530584 0 species Prauserella marina 240 1 1 3 2 Kibdelosporangium 436 genus 2029 0 Kibdelosporangium phytohabitans 433 1 860235 0 species genus 165301 0 1 459 species 0 1586287 1 459 Lentzea guizhouensis 0 1813 genus 2422 Amycolatopsis 7 29 1 1 635 Amycolatopsis orientalis species 0 31958 2618356 0 no rank 696 2 species 1911175 0 1 Amycolatopsis sp. BJA-103 347 1896961 0 species Amycolatopsis sp. AA4 349 1 377 Amycolatopsis japonica 1 0 208439 species 1 Amycolatopsis methanolica 287 species 1814 0 1 Amycolatopsis mediterranei 398 species 33910 0 0 2071 genus 422 Saccharothrix 3 2 1 103731 0 species Saccharothrix espanaensis 419 1 65496 0 genus Actinoalloteichus 1728 1 12 6 Actinoalloteichus sp. ADI127-7 458 1 1612552 0 species species 0 1470176 1 361 Actinoalloteichus hoggarensis 683 2 2644606 0 no rank 0 1612551 species 373 Actinoalloteichus sp. GBA129-24 1 0 2072503 species 310 Actinoalloteichus sp. AHMU CJ021 1 species 340345 0 1 Actinoalloteichus hymeniacidonis 214 1851 0 genus 218 1 species 1852 0 1 Saccharomonospora viridis 218 3 2 1 358 Alloactinosynnema genus 0 674734 1 355 no rank 2636053 0 355 Alloactinosynnema sp. L-07 1 0 1653480 species order 85011 0 1 82 89 Streptomycetales 51785 51696 Streptomycetaceae 146 81 1 0 2062 family 3606 Kitasatospora 5 16 1 0 2063 genus species 0 68173 1 1639 Kitasatospora albolonga 1 Kitasatospora aureofaciens 444 species 1894 0 2066 0 species Kitasatospora setae 994 1 0 2633591 no rank 513 1 0 2018025 species 513 Kitasatospora sp. MMS16-BH015 1 0 1883 genus 47944 Streptomyces 612 75 1 species 0 68202 1 404 Streptomyces fulvissimus 1 Streptomyces gilvosporeus 564 species 553510 0 1969 0 species Streptomyces chartreusis 338 1 species 379067 0 1 Streptomyces bingchenggensis 757 1 571 Streptomyces lincolnensis species 0 1915 0 68280 species 514 Streptomyces violaceusniger 1 389 Streptomyces puniciscabiei 1 0 164348 species species 1355015 0 1 Streptomyces pluripotens 375 1 376 Streptomyces collinus species 0 42684 0 285473 species 388 Streptomyces rubrolavendulae 1 species 1912 0 1 Streptomyces hygroscopicus 1208 species 0 408015 1 295 Streptomyces xiamenensis species 1437453 0 1 Streptomyces leeuwenhoekii 324 655 Streptomyces avermitilis 1 0 33903 species species 0 1935 1 345 Streptomyces violaceoruber Streptomyces lavendulae 541 1 1914 0 species species 0 1950 1 343 Streptomyces peucetius species 1940 0 1 Streptomyces albireticuli 431 1 Streptomyces vietnamensis 539 species 362257 0 species group 1477431 0 2 3303 Streptomyces coelicolor 2928 1 1902 0 species species 0 42239 1 375 Streptomyces sampsonii 1 Streptomyces alfalfae 585 species 1642299 0 1616117 0 species Streptomyces formicae 806 1 539 Streptomyces glaucescens 1 0 1907 species 0 1888 species 1464 Streptomyces albus 1 species 0 1038928 1 454 Streptomyces xinghaiensis 24 11283 no rank 2593676 0 species 1964449 0 1 Streptomyces sp. 3211 682 species 444103 0 1 Streptomyces sp. CNQ-509 380 307 Streptomyces sp. PAMC 26508 1 0 1265601 species 2135430 0 species Streptomyces sp. P3 689 1 1 284 Streptomyces sp. 4F species 0 1751294 Streptomyces sp. S8 308 1 1837283 0 species species 1649184 0 1 Streptomyces sp. CFMR 7 379 Streptomyces sp. CLI2509 373 1 1984801 0 species species 206662 0 1 Streptomyces sp. FR-008 644 0 2059884 species 503 Streptomyces sp. CMB-StM0423 1 species 1972846 0 1 Streptomyces sp. Sge12 529 1849967 0 species Streptomyces sp. SAT1 750 1 species 0 465541 1 475 Streptomyces sp. Mg1 0 234612 species 357 Streptomyces sp. TN58 1 species 1725411 0 1 Streptomyces sp. CdTB01 521 species 0 1812480 1 479 Streptomyces sp. fd1-xmd 1 428 Streptomyces sp. RTd22 species 0 1841249 Streptomyces sp. WAC00288 381 1 2094021 0 species species 0 862751 1 326 Streptomyces sp. SirexAA-E 539 Streptomyces sp. 769 1 0 1262452 species 1 439 Streptomyces sp. MOE7 species 0 1961713 species 1495638 0 1 Streptomyces sp. M56 746 species 0 1661694 1 388 Streptomyces sp. Tue 6075 1 Streptomyces sp. CCM_MD2014 376 species 1561022 0 Streptomyces malaysiensis 596 1 92644 0 species 1102 Streptomyces lydicus 1 0 47763 species 1 Streptomyces alboflavus 530 species 67267 0 1 521 Streptomyces noursei species 0 1971 1 Streptomyces pratensis 334 species 1169025 0 388 Streptomyces sp. XZHG99 1 0 2049881 species 999 Streptomyces venezuelae 1 0 54571 species 350 Streptomyces parvulus 1 0 146923 species species 1930 0 1 Streptomyces scabiei 568 1 Streptomyces autolyticus 1670 species 75293 0 Streptomyces cyaneogriseus 293 1 68192 0 species 1 388 Streptomyces pristinaespiralis species 0 38300 species 0 1916 1 463 Streptomyces lividans species 1926 0 1 Streptomyces reticuli 442 68570 0 species Streptomyces albulus 6583 1 species 193462 0 1 Streptomyces niveus 403 0 1889 species 497 Streptomyces ambofaciens 1 29303 0 species Streptomyces cattleya 351 1 1 Streptomyces pactum 1005 species 68249 0 species 0 1901 1 423 Streptomyces clavuligerus 0 1783515 species 408 Streptomyces sp. S10(2016) 1 793 2 629295 0 species group 1 427 species subgroup 1482558 0 species 1908 0 1 Streptomyces globisporus 427 1 366 species subgroup 1482596 0 1911 0 species Streptomyces griseus 366 1 species 68214 0 1 Streptomyces griseochromogenes 434 85006 0 order Micrococcales 21773 1 120 133 217 2 85018 0 family genus 0 1862 1 2 1 217 Dermatophilus 1 216 Dermatophilus congolensis species 0 1863 family 0 85017 12 9 1 1535 Promicromonosporaceae 2 2 1 282 Xylanimonas genus 0 186188 280 Xylanimonas cellulosilytica 1 0 186189 species 4 3 1 642 Cellulosimicrobium genus 0 157920 1 Cellulosimicrobium cellulans 313 species 1710 0 0 2624466 no rank 325 1 325 Cellulosimicrobium sp. TH-20 1 0 1980001 species 0 254250 genus 599 Isoptericola 3 3 1 species 372663 0 1 Isoptericola dokdonensis 347 species 139208 0 1 Isoptericola variabilis 249 Brevibacteriaceae 384 1 2 7 85019 0 family 377 1 1696 0 genus 0 1703 species 377 Brevibacterium linens 1 2 111 no rank 577468 0 2 3 1 111 Tropheryma genus 0 2038 species 0 2039 1 108 Tropheryma whipplei 2 287 family 125316 0 0 84756 genus 287 Beutenbergia 1 2 1 Beutenbergia cavernae 286 1 84757 0 species 71 1 0 85022 family 1 71 genus 0 43673 Jonesia denitrificans 71 1 43674 0 species family 145360 0 1 3 2 Sanguibacteraceae 324 322 Sanguibacter 4 2 1 0 60919 genus 318 Sanguibacter keddieii 1 0 60920 species 0 85016 family 949 Cellulomonadaceae 6 1 1 Cellulomonas 948 1 5 10 1707 0 genus species 11 0 1 Cellulomonas gilvus 195 232 Cellulomonas fimi 1 0 1708 species 236 1 2620175 0 no rank 2003551 0 species Cellulomonas sp. PSBB021 236 1 1 Cellulomonas flavigena 275 species 1711 0 2611 Dermabacteraceae 9 10 1 0 85020 family 1 3 2 Devriesea 170 genus 472568 0 species 472569 0 1 Devriesea agamarum 167 0 36739 genus 80 1 1630135 0 species Dermabacter vaginalis 80 1 2352 Brachybacterium 17 6 1 0 43668 genus species 2017484 0 1 Brachybacterium sp. VM2412 1480 0 43669 species 235 Brachybacterium faecium 1 2017485 0 species Brachybacterium sp. VR2415 173 1 species 1331682 0 1 Brachybacterium ginsengisoli 201 no rank 2623841 0 1 246 Brachybacterium sp. P6-10-X1 246 1 1903186 0 species 924 Intrasporangiaceae 2 8 1 0 85021 family genus 0 53357 1 211 1 Intrasporangium calvum 211 species 53358 0 265976 0 genus Serinicoccus 224 1 1 2 1758689 0 species Serinicoccus sp. JLT9 223 1 2 10 1 237 Janibacter genus 0 53457 0 857417 species 227 Janibacter indicus 1 250 Arsenicicoccus 2 4 1 0 267408 genus 1 246 no rank 2663846 0 species 0 1658671 1 246 Arsenicicoccus sp. oral taxon 190 85023 0 family Microbacteriaceae 7816 1 45 42 1 990 genus 0 447237 no rank 2626248 0 1 990 1 990 Frondihabitans sp. PAMC 28766 species 0 1795630 Leifsonia 456 1 2 2 110932 0 genus 1575 0 species Leifsonia xyli 454 1 1 263 genus 0 33877 Agromyces aureus 263 1 453304 0 species 138 1 1705353 0 genus 0 708131 species 138 Aurantimicrobium minutum 1 20 6 1 1029 Clavibacter genus 0 1573 0 28447 species 1009 Clavibacter michiganensis 5 177 1 subspecies 0 1874630 1 190 Clavibacter capsici 1 160 Clavibacter nebraskensis subspecies 0 31963 subspecies 0 33014 1 214 Clavibacter insidiosus 268 Clavibacter sepedonicus 1 0 31964 subspecies genus 0 1434032 1 107 107 Pontimonas salivibrio 1 0 1159327 species genus 518733 0 1 2 3 Microterricola 206 species 0 412690 1 203 Microterricola viridarii 1 3 1 428 Rathayibacter genus 0 33886 33888 0 species Rathayibacter tritici 162 1 species 145458 0 1 Rathayibacter toxicus 265 genus 1759331 0 1 2 1 Cnuibacter 206 species 1619308 0 1 Cnuibacter physcomitrellae 205 2518 Microbacterium 14 38 1 0 33882 genus 1 177 Microbacterium paludicola species 0 300019 36805 0 species Microbacterium aurum 181 1 species 2033 0 1 Microbacterium testaceum 227 84292 0 species Microbacterium chocolatum 155 1 202 Microbacterium hominis 1 0 162426 species 8 1538 no rank 0 2609290 1 Microbacterium sp. CGR1 141 species 1696072 0 1 Microbacterium sp. No. 7 311 species 1714373 0 1 148 Microbacterium sp. TPU 3598 species 0 1938334 0 1916917 species 153 Microbacterium sp. 1.5R 1 Microbacterium sp. str. 'China' 156 1 2103230 0 species 1 304 Microbacterium sp. BH-3-3-3 species 0 1906742 1 145 Microbacterium sp. PAMC 28756 species 0 1795053 180 Microbacterium sp. XT11 1 0 367477 species 3 270 no rank 1655488 0 270 3 0 1655489 clade Rhodoluna 270 1 1 3 529883 0 genus 1 Candidatus Rhodoluna planktonica 143 species 535712 0 1 Rhodoluna lacicola 126 species 529884 0 659 Curtobacterium 4 5 1 0 2034 genus no rank 0 257496 2 461 species 1905847 0 1 Curtobacterium sp. BH-2-1-1 207 Curtobacterium sp. MR_MD2014 254 1 1561023 0 species 1 Curtobacterium pusillum 193 species 69373 0 161 1 0 337004 genus 1 161 Microcella alkaliphila species 0 279828 1 3 2 Cryobacterium 343 genus 69578 0 1 164 no rank 0 2649013 species 0 1978566 1 164 Cryobacterium sp. LW097 0 670052 species 177 Cryobacterium arcticum 1 17 36 1 5837 Micrococcaceae family 0 1268 genus 1742993 0 1 4 5 Pseudarthrobacter 552 121292 0 species Pseudarthrobacter sulfonivorans 169 1 1 Pseudarthrobacter chlorophenolicus 143 species 85085 0 species 361575 0 1 Pseudarthrobacter phenanthrenivorans 235 genus 32207 0 1 3 1 Rothia 215 131 Rothia mucilaginosa 1 0 43675 species 2047 0 species Rothia dentocariosa 83 1 1 95 genus 1645 0 1 95 Renibacterium salmoninarum species 0 1646 genus 57493 0 1 4 4 Kocuria 496 Kocuria rhizophila 104 1 72000 0 species species 446860 0 1 Kocuria flava 226 1 162 Kocuria palustris species 0 71999 Arthrobacter 3480 1 29 15 1663 0 genus 409 Arthrobacter alpinus 1 0 656366 species 1 Arthrobacter crystallopoietes 151 species 37928 0 2891 12 235627 0 no rank 121 Arthrobacter sp. Rue61a 1 0 1118963 species 124 Arthrobacter sp. YN 1 0 2020486 species 1 Arthrobacter sp. PAMC 25486 213 species 1494608 0 species 0 1849032 1 172 Arthrobacter sp. U41 1357915 0 species Arthrobacter sp. QXT-31 169 1 species 1652545 0 1 Arthrobacter sp. YC-RL1 121 Arthrobacter sp. FB24 162 1 290399 0 species 0 1771959 species 120 Arthrobacter sp. ATCC 21022 1 species 1690248 0 1 Arthrobacter sp. LS16 130 1 Arthrobacter sp. ERGS1:01 402 species 1704044 0 1806905 0 species Arthrobacter sp. ZXY-2 122 1 1035 Arthrobacter sp. PGP41 1 0 2079227 species 1 144 genus 0 1269 Micrococcus luteus 144 1 1270 0 species genus 0 2078575 1 136 136 Arthrobacter sp. IHBB 11108 1 0 1618207 species 5 2 1 221 Sinomonas genus 0 596707 species 37927 0 1 Sinomonas atrocyanea 216 1 166 genus 0 1868332 Neomicrococcus aestuarii 166 1 556325 0 species 126 1 0 1742992 genus 1 Paenarthrobacter aurescens 126 species 43663 0 0 1742989 genus 189 Glutamicibacter 2 2 1 species 0 256701 1 187 Glutamicibacter arilaitensis Dermacoccaceae 587 1 5 6 145357 0 family genus 745364 0 1 2 1 Luteipulveratus 203 species 571913 0 1 Luteipulveratus mongoliensis 202 genus 0 57495 1 244 244 Dermacoccus nishinomiyaensis 1 0 1274 species 57499 0 genus Kytococcus 135 1 4 2 1 Kytococcus sedentarius 131 species 1276 0 1643682 0 order Geodermatophilales 916 1 8 5 1 18 7 Geodermatophilaceae 911 family 85030 0 300 Blastococcus 3 2 1 0 38501 genus species 138336 0 1 Blastococcus saxobsidens 297 5 2 1 281 Geodermatophilus genus 0 1860 1 Geodermatophilus obscurus 276 species 1861 0 0 88138 genus 312 Modestobacter 2 3 1 1 309 Modestobacter marinus species 0 477641 209 2 1643818 0 no rank genus 147067 0 1 3 2 Thermobispora 209 206 Thermobispora bispora 1 0 2006 species order 85007 0 1 156 185 Corynebacteriales 33600 0 1762 family 15000 Mycobacteriaceae 33 56 1 genus 0 697025 1 103 Hoyosella subflava 103 1 639313 0 species genus 1866885 0 13 3581 0 110539 species 313 Mycobacterium vanbaalenii 1 331 Mycobacterium aurum 1 0 1791 species 1795 0 species Mycobacterium neoaurum 162 1 212 Mycobacterium thermoresistibile 1 0 1797 species 1 Mycobacterium goodii 279 species 134601 0 322 Mycobacterium smegmatis 1 0 1772 species species 1800 0 1 Mycobacterium chubuense 289 species 0 1766 1 160 Mycobacterium fortuitum 1810 0 species Mycobacterium vaccae 316 1 1 Mycobacterium phlei 321 species 1771 0 species 0 758802 1 216 Mycobacterium litorale species 0 1804 1 454 Mycobacterium gilvum 0 36814 species 206 Mycobacterium rhodesiae 1 0 1763 genus 8094 Mycobacterium 34 342 1 197 1 2249310 0 species group 0 722731 species 197 Mycobacterium shigaense 1 Mycobacterium liflandii 214 1 261524 0 species species 1809 0 1 Mycobacterium ulcerans 235 684 4 0 77643 species group species 0 1773 209 3 1 575 Mycobacterium tuberculosis biotype 33894 0 1 Mycobacterium africanum 181 biotype 1765 0 1 Mycobacterium bovis 185 species 0 78331 1 109 Mycobacterium canettii 1 249 Mycobacterium kansasii species 0 1768 species 0 1781 1 429 Mycobacterium marinum no rank 0 2642494 13 2771 Mycobacterium sp. PYR15 260 1 2051552 0 species Mycobacterium sp. EPa45 170 1 1545728 0 species 1 Mycobacterium sp. JLS 208 species 164757 0 species 0 1570328 1 162 Mycobacterium sp. NRRL B-3805 species 0 1561223 1 142 Mycobacterium sp. QIA-37 1 437 Mycobacterium sp. JS623 species 0 212767 species 164756 0 1 Mycobacterium sp. MCS 192 1 240 Mycobacterium sp. YC-RL4 species 0 1682113 1 185 Mycobacterium sp. VKM Ac-1817D species 0 1273687 1879023 0 species Mycobacterium sp. djl-10 285 1 Mycobacterium sp. WY10 199 1 1920667 0 species species 0 1168287 1 76 Mycobacterium sp. MOTT36Y Mycobacterium sp. KMS 215 1 189918 0 species 0 120793 species group 2422 8 Mycobacterium paraintracellulare 70 1 1138383 0 species Mycobacterium marseillense 154 1 701042 0 species species 339268 0 1 Mycobacterium colombiense 212 1767 0 species Mycobacterium intracellulare 515 1 4 125 1 Mycobacterium chimaera 214 subspecies 222805 0 1203599 0 subspecies Mycobacterium yongonense 102 1 35617 0 subspecies Mycobacterium indicus pranii 74 1 1764 0 species Mycobacterium avium 1471 1 331 Mycobacterium dioxanotrophicus 1 0 482462 species 1 Mycobacterium haemophilum 155 species 29311 0 1 Mycobacterium leprae 65 species 1769 0 genus 1073531 0 2 510 species 0 875328 1 276 Mycobacterium sinense 0 1788 species 234 Mycobacterium terrae 1 2679 5 0 670516 genus species 0 1520670 1 138 Mycobacterium stephanolepidis species 0 1774 1 148 Mycobacterium chelonae 1 Mycobacterium abscessus 2089 species 36809 0 0 1578165 species 133 Mycobacterium saopaulense 1 species 0 83262 1 171 Mycobacterium immunogenum 61 1 697024 0 no rank genus 1847725 0 1 61 1528099 0 species Lawsonella clevelandensis 61 1 1 4 2 Tsukamurellaceae 582 family 85028 0 580 Tsukamurella 5 3 1 0 2060 genus species 2061 0 1 Tsukamurella paurometabola 221 57704 0 species Tsukamurella tyrosinosolvens 354 1 1653 0 family Corynebacteriaceae 7336 1 52 22 51 91 1 7314 Corynebacterium genus 0 1716 1 75 Corynebacterium ureicelerivorans species 0 401472 1 Corynebacterium urealyticum 95 species 43771 0 1 Corynebacterium maris 162 species 575200 0 153 Corynebacterium terpenotabidum 1 0 89154 species 1121358 0 species Corynebacterium doosanense 91 1 species 136857 0 1 Corynebacterium testudinoris 111 Corynebacterium kutscheri 130 1 35755 0 species 0 191493 species 172 Corynebacterium sphenisci 1 120 [Brevibacterium] flavum 1 0 92706 species 0 187491 species 106 Corynebacterium glaucum 1 0 1231000 species 80 Corynebacterium lactis 1 139 Corynebacterium falsenii 1 0 108486 species Corynebacterium frankenforstense 165 1 1230998 0 species 153 Corynebacterium argentoratense 1 0 42817 species 1 Corynebacterium humireducens 222 species 1223514 0 1 Corynebacterium ammoniagenes 66 species 1697 0 Corynebacterium marinum 160 1 349751 0 species 1 135 Corynebacterium crudilactis species 0 1652495 species 0 160386 1 72 Corynebacterium casei 1 Corynebacterium striatum 202 species 43770 0 species 0 1727 1 184 Corynebacterium variabile species 1050174 0 1 Corynebacterium epidermidicanis 76 species 0 35757 1 144 Corynebacterium cystitidis Corynebacterium diphtheriae 166 1 1717 0 species Corynebacterium aquilae 152 1 203263 0 species species 0 161879 1 72 Corynebacterium kroppenstedtii 66 Corynebacterium imitans 1 0 156978 species 1 Corynebacterium aurimucosum 94 species 169292 0 109 Corynebacterium pseudotuberculosis 1 0 1719 species 152794 0 species Corynebacterium efficiens 104 1 0 191610 species 70 Corynebacterium atypicum 1 0 1072256 species 1016 Corynebacterium uterequi 1 1 102 Corynebacterium stationis species 0 1705 1 88 Corynebacterium resistens species 0 258224 2624378 0 no rank 151 2 Corynebacterium sp. NML98-0116 82 1 702967 0 species species 0 1487956 1 69 Corynebacterium sp. ATCC 6931 28028 0 species Corynebacterium flavescens 82 1 0 571915 species 116 Corynebacterium mustelae 1 1 78 Corynebacterium camporealensis species 0 161896 1 162 Corynebacterium ulcerans species 0 65058 0 1404244 species 106 Corynebacterium glyciniphilum 1 Corynebacterium phocae 127 1 161895 0 species Corynebacterium jeikeium 139 1 38289 0 species 0 146827 species 78 Corynebacterium simulans 1 species 225326 0 1 Corynebacterium halotolerans 151 species 1721 0 1 Corynebacterium callunae 122 1718 0 species Corynebacterium glutamicum 392 1 0 38305 species 222 Corynebacterium vitaeruminis 1 0 1408191 species 168 Corynebacterium deserti 1 77 Corynebacterium singulare 1 0 161899 species 113 1 0 316606 family 0 286801 genus 113 1 286802 0 species Segniliparus rotundus 113 1 Nocardiaceae 8458 1 42 31 85025 0 family 1 23 154 Rhodococcus 6077 genus 1827 0 1 Rhodococcus qingshengii 255 species 334542 0 375 Rhodococcus jostii 1 0 132919 species species 191292 0 1 Rhodococcus aetherivorans 291 species 43767 0 1 Rhodococcus hoagii 245 1829 0 species Rhodococcus rhodochrous 220 1 Rhodococcus fascians 226 1 1828 0 species species 0 37919 1 1119 Rhodococcus opacus species 0 103816 1 328 Rhodococcus pyridinivorans Rhodococcus ruber 344 1 1830 0 species 12 2168 no rank 0 192944 122 Rhodococcus sp. BH4 1 0 1807790 species 144 Rhodococcus sp. YL-1 1 0 1045808 species species 0 1570939 1 191 Rhodococcus sp. 2G 1805827 0 species Rhodococcus sp. MTM3W5.2 294 1 Rhodococcus sp. WMMA185 137 1 679318 0 species species 0 1653479 1 111 Rhodococcus sp. PBTS 2 140 Rhodococcus sp. H-CA8f 1 0 1727214 species 1 215 Rhodococcus sp. p52 species 0 935199 1 Rhodococcus sp. 008 145 species 1723645 0 species 1033922 0 1 Rhodococcus sp. WB1 302 1 195 Rhodococcus sp. PBTS 1 species 0 1653478 1 172 Rhodococcus sp. B7740 species 0 1564114 0 1833 species 352 Rhodococcus erythropolis 1 0 1817 genus 2339 Nocardia 7 26 1 species 0 37329 1 377 Nocardia farcinica 37332 0 species Nocardia seriolae 279 1 455432 0 species Nocardia terpenica 272 1 497 Nocardia cyriacigeorgica 1 0 135487 species species 37330 0 1 Nocardia nova 271 1 617 Nocardia brasiliensis species 0 37326 382 2 0 85029 family genus 37914 0 2 382 Dietzia timorensis 128 1 499555 0 species 1 254 no rank 0 2617939 Dietzia sp. oral taxon 368 254 1 712270 0 species 8 1483 family 85026 0 1483 Gordonia 8 11 1 0 2053 genus 0 84595 species 213 Gordonia polyisoprenivorans 1 0 2657482 no rank 397 2 species 337191 0 1 Gordonia sp. KTR9 212 species 0 2059875 1 185 Gordonia sp. YC-JH1 species 0 2055 1 208 Gordonia terrae 1 278 Gordonia bronchialis species 0 2054 species 1004901 0 1 Gordonia iterans 165 Gordonia phthalatica 211 1 1136941 0 species 4 4 1 180 Actinopolysporales order 0 622450 622451 0 family Actinopolysporaceae 176 1 1 3 genus 1849 0 1 2 1 Actinopolyspora 175 species 414996 0 1 Actinopolyspora erythraea 174 order 0 622452 4 2 1 345 Kineosporiales 4 3 1 343 Kineosporiaceae family 0 83778 339 Kineococcus 2 1 1 0 33981 genus 1 338 Kineococcus radiotolerans species 0 131568 order 85012 0 1 19 15 Streptosporangiales 2586 family 0 2012 4 3 1 242 Thermomonosporaceae 0 2019 genus 238 Thermomonospora 2 2 1 2020 0 species Thermomonospora curvata 236 1 family 2004 0 1 6 5 Streptosporangiaceae 1230 2000 0 genus Streptosporangium 556 1 2 6 0 2001 species 550 Streptosporangium roseum 1 83681 0 genus Nonomuraea 668 1 3 2 no rank 2593643 0 1 665 species 0 1909395 1 665 Nonomuraea sp. ATCC 55076 family 83676 0 1 6 7 Nocardiopsaceae 1095 116 1 0 83677 genus Thermobifida fusca 116 1 2021 0 species 0 2013 genus 972 Nocardiopsis 8 4 1 1 Nocardiopsis gilva 331 species 280236 0 2014 0 species Nocardiopsis dassonvillei 410 1 1 223 Nocardiopsis alba species 0 53437 order 85004 0 1 26 10 Bifidobacteriales 3415 family 0 31953 29 25 1 3405 Bifidobacteriaceae 75 1 0 196082 genus 0 78258 species 75 Parascardovia denticolens 1 0 196081 genus 123 Scardovia 1 2 1 122 Scardovia inopinata 1 0 78259 species 2720 Bifidobacterium 22 19 1 0 1678 genus 114 Bifidobacterium angulatum 1 0 1683 species Bifidobacterium choerinum 202 1 35760 0 species species 0 1687 1 55 Bifidobacterium coryneforme 1 121 Bifidobacterium dentium species 0 1689 0 1691 species 60 Bifidobacterium indicum 1 388 Bifidobacterium actinocoloniiforme 1 0 638619 species 0 1694 species 184 Bifidobacterium pseudolongum 1 28026 0 species Bifidobacterium pseudocatenulatum 131 1 species 0 33905 1 76 Bifidobacterium thermophilum 91 Bifidobacterium adolescentis 1 0 1680 species Bifidobacterium scardovii 164 1 158787 0 species Bifidobacterium breve 242 1 1685 0 species species 1684 0 1 Bifidobacterium asteroides 93 1686 0 species Bifidobacterium catenulatum 166 1 59 2 subspecies 630129 0 1 Bifidobacterium kashiwanohense 107 1681 0 species Bifidobacterium bifidum 133 1 216816 0 species Bifidobacterium longum 334 1 species 0 28025 1 144 Bifidobacterium animalis genus 2701 0 1 2 2 Gardnerella 458 species 2702 0 1 Gardnerella vaginalis 456 order 85009 0 1 32 32 Propionibacteriales 4104 1972 Nocardioidaceae 10 13 1 0 85015 family 232 Aeromicrobium 2 1 1 0 2040 genus species 2041 0 1 Aeromicrobium erythreum 231 0 116071 genus 162 Micropruina 4 2 1 0 75385 species 158 Micropruina glycogenica 1 2 10 1 313 Kribbella genus 0 182639 1 303 Kribbella flavida species 0 182640 2044 0 genus Pimelobacter 408 1 3 2 1 Pimelobacter simplex 405 species 2045 0 4 16 1 847 Nocardioides genus 0 1839 362 Nocardioides dokdonensis 1 0 450734 species 0 2045452 species 208 Nocardioides sp. 78 1 no rank 2615069 0 1 261 1 261 Nocardioides sp. JS614 species 0 196162 31957 0 family Propionibacteriaceae 2100 1 23 18 396 Cutibacterium 4 3 1 0 1912216 genus species 1747 0 1 Cutibacterium acnes 161 33010 0 species Cutibacterium avidum 131 1 1 101 Cutibacterium granulosum species 0 33011 1 8 5 Tessaracoccus 708 genus 72763 0 1332264 0 species Tessaracoccus aquimaris 197 1 species 399497 0 1 Tessaracoccus flavescens 179 197 1 2635419 0 no rank species 0 1909732 1 197 Tessaracoccus sp. T2.5-30 1 127 Tessaracoccus flavus species 0 1610493 genus 203133 0 1 88 no rank 2633994 0 1 88 species 0 1871034 1 88 Propionimicrobium sp. Marseille-P3275 genus 1912215 0 1 4 2 Acidipropionibacterium 248 1 Acidipropionibacterium acidipropionici 244 species 1748 0 genus 2801844 0 1 109 species 1750 0 1 Pseudopropionibacterium propionicum 109 197 1 0 29404 genus 1 197 Microlunatus phosphovorus species 0 29405 0 1743 genus 331 Propionibacterium 3 4 1 1 62 no rank 0 2608905 1 Propionibacterium sp. oral taxon 193 62 species 671223 0 species 1744 0 1 Propionibacterium freudenreichii 265 Glycomycetales 290 1 4 2 85014 0 order 85034 0 family Glycomycetaceae 288 1 9 3 genus 283810 0 1 3 2 Stackebrandtia 279 0 283811 species 276 Stackebrandtia nassauensis 1 4 4 1 291 Nakamurellales order 0 1643684 85031 0 family Nakamurellaceae 287 1 2 3 genus 0 53460 2 3 1 285 Nakamurella 53461 0 species Nakamurella multipartita 282 1 order 0 414714 4 10 1 2105 Catenulisporales family 414877 0 1 10 3 Catenulisporaceae 2095 414878 0 genus Catenulispora 2085 1 2 9 species 0 304895 1 2076 Catenulispora acidiphila order 85008 0 1 1 20 Micromonosporales 4541 Micromonosporaceae 4540 1 19 52 28056 0 family 168694 0 genus Salinispora 441 1 1 3 Salinispora arenicola 243 1 168697 0 species 168695 0 species Salinispora tropica 197 1 1873 0 genus Micromonospora 985 1 4 9 species 0 1003110 1 268 Verrucosispora maris no rank 2617518 0 1 319 1 319 Micromonospora sp. L5 species 0 648999 species 47850 0 1 Micromonospora aurantiaca 389 4 10 1 1088 Plantactinospora genus 0 673534 2631981 0 no rank 1078 3 0 2108470 species 320 Plantactinospora sp. BC1 1 0 2071627 species 386 Plantactinospora sp. BB1 1 0 2024580 species 372 Plantactinospora sp. KBS50 1 84593 0 genus Verrucosispora 1 1 1 6 25 Actinoplanes 1973 genus 1865 0 species 1866 0 1 Actinoplanes missouriensis 408 no rank 0 2626549 3 1163 Actinoplanes sp. SE50 379 1 2033844 0 species 405 Actinoplanes sp. N902-109 1 0 649831 species 1 Actinoplanes sp. SE50/110 379 species 134676 0 196914 0 species Actinoplanes friuliensis 377 1 order 0 1643683 3 1 1 108 Acidothermales 2 107 family 85032 0 28048 0 genus Acidothermus 107 1 5 2 species 28049 0 1 Acidothermus cellulolyticus 102 Rubrobacteria 332 1 6 2 84995 0 class 84996 0 order Rubrobacterales 330 1 15 5 family 0 84997 4 6 1 315 Rubrobacteraceae 42255 0 genus Rubrobacter 309 1 3 2 171 Rubrobacter xylanophilus 1 0 49319 species 1 Rubrobacter radiotolerans 136 species 42256 0 0 67819 phylum 246 3 1663419 0 class 246 3 1663425 0 order Fimbriimonadales 246 1 3 3 1663426 0 family 243 2 243 Fimbriimonas 4 2 1 0 1005038 genus 239 Fimbriimonas ginsengisoli 1 0 1005039 species phylum 200795 0 36 3452 1 3 2 Caldilineae 317 class 475962 0 2 315 order 0 475963 315 2 0 475964 family genus 0 233191 2 1 1 315 Caldilinea 133453 0 species Caldilinea aerophila 314 1 class 0 292625 7 5 1 395 Anaerolineae Anaerolineales 390 1 6 1 292629 0 order family 0 292628 4 5 1 389 Anaerolineaceae 1 101 no rank 0 1324991 1 Anaerolineaceae bacterium oral taxon 439 101 species 1889813 0 Brevefilum 154 1 2 1 2019482 0 genus 1 Brevefilum fermentans 153 species 1986204 0 genus 0 233189 1 130 1 130 Anaerolinea thermophila species 0 167964 Chloroflexia 1300 1 9 10 32061 0 class 0 32064 order 1291 Chloroflexales 9 5 1 434 4 1508595 0 suborder family 1508635 0 1 4 4 Roseiflexaceae 434 1 3 3 Roseiflexus 430 genus 120961 0 no rank 2609473 0 1 212 Roseiflexus sp. RS-1 212 1 357808 0 species species 120962 0 1 Roseiflexus castenholzii 215 1508594 0 suborder 852 4 852 4 0 1106 family 1 4 4 Chloroflexus 852 genus 1107 0 0 152260 species 446 Chloroflexus aggregans 1 1 2 201 Chloroflexus aurantiacus 402 species 1108 0 Chloroflexus sp. Y-400-fl 201 1 480224 0 strain 600 Dehalococcoidia 2 7 1 0 301297 class 0 670486 genus 194 Dehalogenimonas 3 4 1 Dehalogenimonas formicexedens 114 1 1839801 0 species 1 Dehalogenimonas lykanthroporepellens 76 species 552810 0 order 1202465 0 3 404 1202464 0 family 404 3 genus 61434 0 1 3 6 Dehalococcoides 404 71 1 237581 0 no rank 1 71 Dehalococcoides sp. UCH007 species 0 1522671 Dehalococcoides mccartyi 327 1 61435 0 species class 0 189775 6 325 1 3 1 Thermomicrobiales 78 order 189776 0 0 189777 family 77 2 77 Thermomicrobium 2 2 1 0 499 genus 1 75 Thermomicrobium roseum species 0 500 subclass 0 85000 3 247 247 Sphaerobacterales 4 3 1 0 85001 order 243 2 255728 0 suborder family 85002 0 1 2 1 Sphaerobacteraceae 243 2056 0 genus 242 1 1 242 Sphaerobacter thermophilus species 0 2057 0 1382928 class 515 3 order 1382929 0 1 7 3 Ardenticatenales 515 0 1382930 family 508 Ardenticatenaceae 5 2 1 503 1 0 1988031 genus 503 Candidatus Promineofilum breve 1 0 1806508 species phylum 0 544448 101 1 1 37521 Tenericutes 2799557 0 no rank 494 1 0 1912503 genus 494 1 2624196 0 no rank 494 1 Candidatus Izimaplasma sp. HR1 494 1 1541959 0 species class 0 31969 97 100 1 35838 Mollicutes 15361 Entomoplasmatales 36 39 1 0 186328 order 1 14 12 Entomoplasmataceae 4697 family 33925 0 5 14 1 1424 Entomoplasma genus 0 46238 species 0 81459 1 461 Entomoplasma melaleucae 0 74700 species 168 Entomoplasma freundtii 1 214888 0 species Entomoplasma luminosum 304 1 477 Entomoplasma somnilux 1 0 215578 species 0 46239 genus 3261 Mesoplasma 36 8 1 471 Mesoplasma tabanidae 1 0 219745 species 0 225999 species 308 Mesoplasma syrphidae 1 1 477 Mesoplasma coleopterae species 0 324078 2149 0 species Mesoplasma entomophilum 456 1 1 Mesoplasma chauliocola 417 species 216427 0 species 0 138853 1 292 Mesoplasma lactucae Mesoplasma florum 804 1 2151 0 species 1 24 18 Spiroplasmataceae 10628 family 2131 0 2132 0 genus Spiroplasma 10610 1 135 23 Spiroplasma taiwanense 673 1 2145 0 species species 2136 0 1 Spiroplasma monobiae 385 species 0 2144 1 279 Spiroplasma mirum species 216937 0 1 Spiroplasma floricola 729 1 605 Spiroplasma cantharicola species 0 362837 1 Spiroplasma litorale 643 species 216942 0 296 Spiroplasma atrichopogonis 1 0 1114980 species species 216936 0 1 Spiroplasma diminutum 624 0 216946 species 621 Spiroplasma turonicum 1 Spiroplasma apis 411 1 2137 0 species species 0 216938 1 491 Spiroplasma helicoides 1 Spiroplasma kunkelii 489 species 47834 0 1 Spiroplasma culicicola 583 species 216935 0 species 0 216945 1 398 Spiroplasma syrphidicola 1 Spiroplasma sabaudiense 275 species 216944 0 species 0 216934 1 566 Spiroplasma corruscae 1 Spiroplasma chrysopicola 313 species 216933 0 no rank 2637901 0 2 866 species 0 1898044 1 433 Spiroplasma sp. TU-14 1914410 0 species Spiroplasma sp. NBRC 100390 433 1 Spiroplasma eriocheiris 322 1 315358 0 species Spiroplasma clarkii 484 1 2139 0 species 2133 0 species Spiroplasma citri 422 1 3315 Acholeplasmatales 10 13 1 0 186329 order family 2146 0 1 25 12 Acholeplasmataceae 3305 1458 Candidatus Phytoplasma 6 11 1 0 33926 genus 798 3 0 85620 species group 1 247 Maize bushy stunt phytoplasma species 0 202462 100379 0 species Onion yellows phytoplasma 251 1 Aster yellows witches'-broom phytoplasma 300 1 229545 0 species 1 329 species group 0 85632 species 0 59748 1 329 Candidatus Phytoplasma australiense 1 320 species group 0 85630 species 0 37692 1 320 Candidatus Phytoplasma mali genus 0 2147 5 5 1 1822 Acholeplasma 443 Acholeplasma laidlawii 1 0 2148 species 485 Acholeplasma oculi 1 0 35623 species species 38986 0 1 Acholeplasma palmae 597 0 61635 species 292 Acholeplasma brassicae 1 53 44 1 17062 Mycoplasmatales order 0 2085 0 2092 family 17009 Mycoplasmataceae 38 43 1 3 4 1 854 Ureaplasma genus 0 2129 species 0 134821 1 434 Ureaplasma parvum 1 Ureaplasma urealyticum 416 species 2130 0 4621 12 0 2767358 genus species 2107 0 1 Mycoplasma pulmonis 383 species 2109 0 1 Mycoplasma synoviae 255 species 48003 0 1 Mycoplasma pullorum 249 Mycoplasma cynos 410 1 171284 0 species 28903 0 species Mycoplasma bovis 779 1 species 0 2115 1 392 Mycoplasma fermentans species 0 29553 1 406 Mycoplasma bovirhinis species 29555 0 1 Mycoplasma canis 425 2112 0 species Mycoplasma bovigenitalium 283 1 Mycoplasma californicum 217 1 2113 0 species species 2110 0 1 Mycoplasma agalactiae 415 407 Mycoplasma arginini 1 0 2094 species 2093 0 genus Mycoplasma 11496 1 27 136 430 Mycoplasma hyorhinis 1 0 2100 species 520 Mycoplasma mobile 1 0 2118 species no rank 0 2683645 1 276 Mycoplasma sp. (ex Biomphalaria glabrata) 276 1 1749074 0 species 1 339 Mycoplasma haemocanis species 0 136241 1 348 Mycoplasma canadense species 0 29554 species 2099 0 1 Mycoplasma hyopneumoniae 1015 species 0 984991 1 352 Mycoplasma parvum 0 171632 species 103 Mycoplasma ovis 1 species 0 65123 1 83 Mycoplasma wenyonii Mycoplasma yeatsii 486 1 51365 0 species 45362 0 species Mycoplasma bovoculi 395 1 85 Mycoplasma pneumoniae 1 0 2104 species 0 2111 species 221 Mycoplasma arthritidis 1 Mycoplasma hominis 608 1 2098 0 species 0 2096 species 355 Mycoplasma gallisepticum 1 species 0 2097 1 165 Mycoplasma genitalium 29501 0 species Mycoplasma haemofelis 943 1 species group 656088 0 3 2501 Mycoplasma capricolum 672 1 2095 0 species Mycoplasma leachii 590 1 2105 0 species 0 2102 species 1239 Mycoplasma mycoides 1 57372 0 species Mycoplasma suis 194 1 1 456 Mycoplasma putrefaciens species 0 2123 2128 0 species Mycoplasma flocculare 238 1 species 50052 0 1 Mycoplasma crocodyli 411 1 Mycoplasma penetrans 567 species 28227 0 species 86660 0 1 Mycoplasma dispar 269 2 1188 no rank 713063 0 1 610 Tenericutes bacterium MO-XQ species 0 1911684 1 Tenericutes bacterium MZ-XQ 578 species 1911683 0 138 1 1859062 0 no rank 1 138 genus 0 262406 Thermobaculum terrenum 138 1 166501 0 species 14 1992 phylum 0 40117 class 203693 0 1 17 14 Nitrospira 1992 17 13 1 1975 Nitrospirales order 0 189778 1958 Nitrospiraceae 12 11 1 0 189779 family 559 Nitrospira 5 4 1 0 1234 genus 0 42253 species 179 Nitrospira moscoviensis 1 1 122 Nitrospira japonica species 0 1325564 1 130 Nitrospira defluvii species 0 330214 Candidatus Nitrospira inopinata 124 1 1715989 0 species 1 2 6 Thermodesulfovibrio 945 genus 28261 0 1 Thermodesulfovibrio yellowstonii 939 species 28262 0 genus 0 179 4 4 1 443 Leptospirillum 127 1 261385 0 species group 127 Leptospirillum sp. Group II 'CF-1' 1 0 1660083 species 133 1 261386 0 species group species 178606 0 1 Leptospirillum ferriphilum 133 1 179 species group 655606 0 Leptospirillum ferrooxidans 179 1 180 0 species 0 1783270 clade 218791 369 1097 7 142182 0 phylum 0 219685 class 1097 Gemmatimonadetes 4 7 1 Gemmatimonadales 1093 1 5 6 219686 0 order family 0 219687 3 5 1 1088 Gemmatimonadaceae 19 3 1 522 Gemmatimonas genus 0 173479 1379270 0 species Gemmatimonas phototrophica 257 1 1 Gemmatimonas aurantiaca 246 species 173480 0 0 1706036 genus 563 1 Gemmatirosa kalamazoonesis 563 1 861299 0 species phylum 0 65842 5 569 class 0 204430 5 1 1 569 Fibrobacteria 568 Fibrobacterales 1 4 1 0 218872 order 0 204431 family 567 Fibrobacteraceae 3 2 1 832 0 genus Fibrobacter 565 1 2 3 562 Fibrobacter succinogenes 1 0 833 species 456828 0 phylum 578 1 genus 0 456826 1 578 1 578 Candidatus Cloacimonas acidaminovorans species 0 456827 clade 0 68336 356 216547 21 3254 phylum 0 1090 3254 Chlorobia 5 21 1 0 191410 class 1 22 20 Chlorobiales 3249 order 191411 0 3227 Chlorobiaceae 29 19 1 0 191412 family 1 37 4 Chlorobaculum 391 genus 256319 0 Chlorobaculum limnaeum 135 1 274537 0 species species 274539 0 1 Chlorobaculum parvum 135 0 1097 species 84 Chlorobaculum tepidum 1 genus 0 100715 1 277 1 Chloroherpeton thalassium 277 species 100716 0 0 1101 genus 620 Prosthecochloris 5 46 1 1 Prosthecochloris aestuarii 143 species 1102 0 0 2632826 no rank 431 3 1 166 Prosthecochloris sp. HL-130-GSB species 0 1974213 0 281093 species 122 Prosthecochloris sp. GSB1 1 species 0 1868325 1 143 Prosthecochloris sp. CIB 2401 no rank 274493 0 8 1910 0 1099 genus 331 Pelodictyon 4 3 1 0 34090 species 217 Pelodictyon phaeoclathratiforme 1 1 110 Pelodictyon luteolum species 0 1100 genus 0 1091 21 5 1 1579 Chlorobium 1092 0 species Chlorobium limicola 371 1 1 Chlorobium phaeovibrioides 143 species 1094 0 1 753 Chlorobium phaeobacteroides species 0 1096 291 Chlorobium chlorochromatii 1 0 337090 species Bacteroidetes 211761 1 328 21 976 0 phylum class 0 117747 11 24 1 12855 Sphingobacteriia order 0 200666 26 23 1 12844 Sphingobacteriales family 84566 0 1 22 41 Sphingobacteriaceae 12818 genus 28453 0 1 13 6 Sphingobacterium 3411 species 0 1010 1 712 Sphingobacterium mizutaii 2609468 0 no rank 2686 4 1 547 Sphingobacterium sp. 21 species 0 743722 1 868 Sphingobacterium sp. ML3W species 0 1538644 1 Sphingobacterium sp. B29 609 species 1933220 0 0 2003121 species 662 Sphingobacterium sp. G1-14 1 1 11 2 Solitalea 946 genus 929509 0 0 995 species 935 Solitalea canadensis 1 4254 Pedobacter 42 6 1 0 84567 genus 1 973 Pedobacter ginsengisoli species 0 363852 species 430522 0 1 Pedobacter steynii 672 species 0 984 1 880 Pedobacter heparinus 1 Pedobacter cryoconitis 898 species 188932 0 1 789 no rank 2628915 0 789 Pedobacter sp. PACM 27299 1 0 1727164 species 1771 Mucilaginibacter 4 9 1 0 423349 genus 1 Mucilaginibacter sp. BJC16-A31 569 species 1234841 0 1 Mucilaginibacter gotjawali 764 species 1550579 0 1 429 no rank 0 2617802 1300914 0 species Mucilaginibacter sp. PAMC 26640 429 1 1 1491 no rank 84568 0 1 1491 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 0 1986952 Pseudopedobacter 904 1 2 8 1649482 0 genus species 0 151895 1 896 Pseudopedobacter saltans class 0 1853228 16 1 1 4845 Chitinophagia Chitinophagales 4844 1 9 15 1853229 0 order Chitinophagaceae 4835 1 31 14 563835 0 family genus 0 379899 3 11 1 740 Niabella 353 Niabella ginsenosidivorans 1 0 1176587 species 446683 0 species Niabella soli 376 1 genus 79328 0 1 2 3 Chitinophaga 810 79329 0 species Chitinophaga pinensis 416 1 species 0 2029983 1 392 Chitinophagaceae bacterium 13 428 1 0 649460 genus species 477680 0 1 Filimonas lacunae 428 Niastella 1364 1 2 2 354354 0 genus 0 354356 species 1362 Niastella koreensis 1 1 3 2 Arachidicoccus 691 genus 1769012 0 no rank 0 2636138 1 688 1850526 0 species Arachidicoccus sp. BS20 688 1 genus 398041 0 1 3 2 Flavisolibacter 771 0 1492898 species 768 Flavisolibacter tropicus 1 class 117743 0 1 148 83 Flavobacteriia 150165 0 200644 order 150082 Flavobacteriales 147 121 1 0 313602 no rank 1610 4 Candidatus Sulcia 1256 1 2 8 336809 0 genus 1 1248 Candidatus Sulcia muelleri species 0 336810 354 Candidatus Walczuchella 1 2 1 0 1940138 genus 353 Candidatus Walczuchella monophlebidarum 1 0 1415657 species 104 583 1 124014 Flavobacteriaceae family 0 49546 1534 1 0 83612 genus 1 1534 Psychroflexus torquis species 0 57029 153265 0 genus Aequorivita 1277 1 2 4 0 101385 species 1273 Aequorivita sublithincola 1 2 2238 no rank 0 61432 Flavobacteriaceae bacterium 3519-10 394 1 531844 0 species 1150389 0 species Flavobacteriaceae bacterium UJ101 1844 1 1 6 72 Polaribacter 13045 genus 52959 0 1774273 0 species Polaribacter vadi 2691 1 0 996801 species 3038 Polaribacter reichenbachii 1 0 196858 no rank 7244 3 1 Polaribacter sp. MED152 2475 species 313598 0 1 Polaribacter sp. ALD11 2264 species 2058137 0 1529069 0 species Polaribacter sp. BM10 2505 1 0 252306 genus 340 1 species 0 252307 1 340 Robiginitalea biformata 1 27 4 Dokdonia 3771 genus 326319 0 1348 Dokdonia donghaensis 1 0 326320 species 2615033 0 no rank 2396 2 species 0 313590 1 1088 Dokdonia sp. MED134 species 983548 0 1 Dokdonia sp. 4H-3-7-5 1308 0 1649495 genus 2269 Seonamhaeicola 2 1 1 2268 1 0 2622645 no rank 1 Seonamhaeicola sp. S2-3 2268 species 1936081 0 0 393005 genus 1568 1 1568 Tamlana sp. UJ94 1 0 2069432 species 1 1367 genus 0 143222 0 2633436 no rank 1367 1 1367 Salegentibacter sp. T436 1 0 1729720 species 903 1 389486 0 genus no rank 2648869 0 1 903 Sediminicola sp. YIK13 903 1 1453352 0 species genus 1016 0 1 15 117 Capnocytophaga 8993 species 0 28188 1 1083 Capnocytophaga canimorsus 0 327575 species 403 Capnocytophaga leadbetteri 1 0 1019 species 1112 Capnocytophaga sputigena 1 429 Capnocytophaga ochracea 1 0 1018 species 850 Capnocytophaga cynodegmi 1 0 28189 species 445 Capnocytophaga gingivalis 1 0 1017 species 1 Capnocytophaga stomatis 702 species 1848904 0 45243 0 species Capnocytophaga haemolytica 378 1 6 3474 no rank 0 2640652 1945657 0 species Capnocytophaga sp. H2931 671 1 1316596 0 species Capnocytophaga sp. oral taxon 878 656 1 0 1705617 species 451 Capnocytophaga sp. oral taxon 323 1 1 514 Capnocytophaga sp. ChDC OS43 species 0 209053 species 0 1316593 1 452 Capnocytophaga sp. oral taxon 864 1 Capnocytophaga sp. H4358 730 species 1945658 0 76 4 1 6510 Lacinutrix genus 0 291183 2 4287 no rank 0 2647285 Lacinutrix sp. Bg11-31 2125 1 2057808 0 species 2162 Lacinutrix sp. 5H-3-7-4 1 0 983544 species 1 Lacinutrix venerupis 2147 species 1486034 0 Gramella 3845 1 5 45 292691 0 genus 986 Gramella sp. SH35 1 0 2126553 species 1 936 Gramella sp. LPB0144 species 0 1913577 0 411153 species 1187 Gramella forsetii 1 species 0 1486245 1 691 Gramella flava 1518147 0 genus 1819 1 1 Wenyingzhuangia fucanilytica 1819 species 1790137 0 0 252356 genus 5917 Maribacter 70 5 1 0 2615042 no rank 4892 3 0 313603 species 1379 Maribacter sp. HTCC2170 1 1836467 0 species Maribacter sp. T28 1675 1 Maribacter sp. 1_2014MBL_MicDiv 1838 1 1644130 0 species species 0 1178778 1 955 Maribacter cobaltidurans 104267 0 genus Tenacibaculum 8326 1 5 18 0 107401 species 1664 Tenacibaculum maritimum 1 Tenacibaculum dicentrarchi 1740 1 669041 0 species 1 Tenacibaculum jejuense 2681 species 584609 0 species 1850252 0 1 Tenacibaculum todarodis 2223 genus 0 104264 4 28 1 6193 Cellulophaga 1 Cellulophaga lytica 2153 species 979 0 1 Cellulophaga algicola 1993 species 59600 0 76594 0 species Cellulophaga baltica 2019 1 358023 0 genus Lutibacter 2691 1 5 2 0 1622118 species 2686 Lutibacter profundi 1 1 2808 genus 2700084 0 1850246 0 species Lutibacter sp. LPB0138 2808 1 genus 363408 0 1 5 104 Nonlabens 5027 1 Nonlabens dokdonensis 1262 species 328515 0 2615035 0 no rank 2440 2 1 1347 Nonlabens sp. MIC269 species 0 1476901 1 Nonlabens sp. MB-3u-79 1093 species 2058134 0 1221 Nonlabens sediminis 1 0 319236 species genus 76831 0 1 5 96 Myroides 3680 1 930 Myroides profundi species 0 480520 species 0 76832 1 900 Myroides odoratimimus 1754 2 0 2642485 no rank 1 868 Myroides sp. ZB35 species 0 1458492 Myroides sp. A21 886 1 1583100 0 species 0 336276 genus 1992 1 no rank 2615019 0 1 1992 0 2058135 species 1992 Olleya sp. Bg11-27 1 genus 0 1176327 1 850 0 2636237 no rank 850 1 1 850 Aureitalea sp. RR4-38 species 0 2094025 1626 Muricauda 3 6 1 0 111500 genus species 111501 0 1 Muricauda ruestringensis 1020 species 516051 0 1 Muricauda lutaonensis 600 1284 1 0 178469 genus species 0 616991 1 1284 Arenibacter algicola 1 2 2 Algibacter 2205 genus 261827 0 species 0 1736674 1 2203 Algibacter alginicilyticus 1 2 1 Siansivirga 2204 genus 1204360 0 species 762954 0 1 Siansivirga zeaxanthinifaciens 2203 3799 Formosa 13 3 1 0 225842 genus no rank 2644710 0 2 3786 Formosa sp. Hel3_A1_48 2282 1 1336795 0 species 1 1504 Formosa sp. Hel1_33_131 species 0 1336794 0 417127 genus 2195 1 species 0 398743 1 2195 Zunongwangia profunda 1828 1 0 1209327 genus Flavivirga eckloniae 1828 1 1803846 0 species 1747 1 0 216431 genus 313588 0 species Croceibacter atlanticus 1747 1 1 2 1 Zobellia 888 genus 112040 0 63186 0 species Zobellia galactanivorans 887 1 genus 286104 0 1 18 3 Winogradskyella 4304 2 4286 no rank 2615021 0 species 0 1936080 1 2052 Winogradskyella sp. J14-2 species 754409 0 1 Winogradskyella sp. PG-2 2234 1 46 9 Flavobacterium 14388 genus 237 0 986 0 species Flavobacterium johnsoniae 3367 1 1380 Flavobacterium gilvum 1 0 1492737 species Flavobacterium psychrophilum 1445 1 96345 0 species 1 Flavobacterium crassostreae 1017 species 1763534 0 species 1306519 0 1 Flavobacterium commune 1264 996 0 species Flavobacterium columnare 2738 1 1 Flavobacterium indicum 1796 species 312277 0 1335 Flavobacterium branchiophilum 1 0 55197 species 9 Cryomorphaceae 1 0 246874 family 3 5 1 833 Crocinitomicaceae family 0 1853230 genus 0 332102 8 2 1 828 Fluviicola 820 Fluviicola taffensis 1 0 191579 species 1755828 0 family Ichthyobacteriaceae 751 1 3 8 1 2 25 Ichthyobacterium 743 genus 1755829 0 Ichthyobacterium seriolicida 718 1 242600 0 species 830 2 1333713 0 family Owenweeksia 830 1 13 2 267986 0 genus 1 Owenweeksia hongkongensis 817 species 253245 0 family 39782 0 1 10 6 Blattabacteriaceae 5299 9 53 1 5293 Blattabacterium genus 0 34098 2647581 0 no rank 3861 6 1 Blattabacterium sp. (Mastotermes darwiniensis) 528 species 39768 0 719 Blattabacterium sp. (Nauphoeta cinerea) 1 0 1316444 species 1 588 Blattabacterium sp. (Periplaneta americana) species 0 367488 669 Blattabacterium sp. (Blattella germanica) 1 0 624186 species species 0 1186051 1 740 Blattabacterium sp. (Blaberus giganteus) 1 Blattabacterium sp. (Blatta orientalis) 617 species 367806 0 0 1653831 species 662 Blattabacterium cuenoti 1 species 0 164514 1 717 Blattabacterium punctulatus 0 2762318 family 16615 19 594 1 28250 0 genus species 28251 0 1 Ornithobacterium rhinotracheale 594 genus 0 308865 6 61 1 5594 Elizabethkingia Elizabethkingia genomosp. 3 851 1 1756149 0 species 1137 Elizabethkingia miricola 1 0 172045 species species 0 238 1 925 Elizabethkingia meningoseptica Elizabethkingia genomosp. 4 726 1 1756150 0 species 1894 Elizabethkingia anophelis 1 0 1117645 species 0 1013 genus 565 1 1 565 Weeksella virosa species 0 1014 no rank 0 2782232 10 8476 genus 0 59732 49 9 1 8068 Chryseobacterium species 1324352 0 1 Chryseobacterium gallinarum 709 558152 0 species Chryseobacterium piperi 914 1 2906 3 0 2593645 no rank 1 Chryseobacterium sp. T16E-39 1175 species 2015076 0 814 Chryseobacterium sp. IHB B 17019 1 0 1721091 species 917 Chryseobacterium sp. StRB126 1 0 878220 species 253 0 species Chryseobacterium indologenes 1511 1 0 1265445 species 337 Chryseobacterium camelliae 1 1 Chryseobacterium glaciei 1642 species 1685010 0 1 408 genus 2782228 0 1 408 Chryseobacterium taklimakanense species 0 536441 1386 1 34084 0 genus 1 1386 Riemerella anatipestifer species 0 34085 1 4 7 Bacteroidetes Order II. Incertae sedis 938 order 1100069 0 family 0 563843 9 6 1 934 Rhodothermaceae 2 2 1 263 Salinibacter genus 0 146918 146919 0 species Salinibacter ruber 261 1 0 1196022 no rank 366 1 366 Rhodothermaceae bacterium RA 1 0 1779382 species genus 0 29548 2 11 1 296 Rhodothermus 29549 0 species Rhodothermus marinus 285 1 class 0 200643 15 67 1 14942 Bacteroidia 1 21 10 Marinilabiliales 3157 order 1970189 0 1 3 4 Prolixibacteraceae 829 family 1471398 0 1471399 0 genus Draconibacterium 825 1 5 2 species 0 1168034 1 820 Draconibacterium orientale family 1970190 0 1 1 2 Salinivirgaceae 653 1970191 0 genus 652 1 1 652 Salinivirga cyanobacteriivorans species 0 1307839 1 1056 family 0 1573805 1 1056 genus 0 2060722 species 1717717 0 1 Marinifilaceae bacterium SPP2 1056 family 558415 0 1 5 3 Marinilabiliaceae 598 genus 1193324 0 1 2 7 Alkalitalea 593 Alkalitalea saponilacus 586 1 889453 0 species 56 43 1 11770 Bacteroidales order 0 171549 347 Rikenellaceae 1 4 1 0 171550 family genus 1611681 0 1 2 5 Mucinivorans 194 species 1433126 0 1 Mucinivorans hirudinis 189 0 239759 genus 152 1 species 0 214856 1 152 Alistipes finegoldii 5 1069 family 2005520 0 0 294702 genus 307 Proteiniphilum 1 2 1 306 Proteiniphilum saccharofermentans 1 0 1642647 species genus 0 307628 1 155 155 Petrimonas mucosa 1 0 1642646 species genus 0 1784836 2 8 1 607 Fermentimonas Fermentimonas caenicola 599 1 1562970 0 species family 0 2005519 1 2 1 125 Barnesiellaceae 1 124 genus 397864 0 Barnesiella viscericola 124 1 397865 0 species family 2005525 0 1 3 7 Tannerellaceae 879 378 Tannerella 1 3 1 0 195950 genus 238 Tannerella forsythia 1 0 28112 species 1 139 no rank 0 2620507 1 139 Tannerella sp. oral taxon HOT-286 species 0 712710 1 9 3 Parabacteroides 498 genus 375288 0 237 Parabacteroides distasonis 1 0 823 species 0 2649774 no rank 252 1 species 2025876 0 1 Parabacteroides sp. CT06 252 0 333046 no rank 2251 5 1138 3 0 909656 genus Bacteroides dorei 363 1 357276 0 species 1 Bacteroides salanitronis 489 species 376805 0 Bacteroides vulgatus 286 1 821 0 species 0 511434 genus 1113 Candidatus Azobacteroides 2 2 1 species 0 511435 1 1111 Candidatus Azobacteroides pseudotrichonymphae 0 171552 family 2370 Prevotellaceae 11 1 1 10 9 1 2369 Prevotella genus 0 838 species 0 28131 1 653 Prevotella intermedia Prevotella melaninogenica 231 1 28132 0 species species 0 1177574 1 245 Prevotella jejuni 188 Prevotella fusca 1 0 589436 species no rank 2638335 0 1 349 species 652716 0 1 Prevotella sp. oral taxon 299 349 Prevotella denticola 104 1 28129 0 species Prevotella enoeca 163 1 76123 0 species Prevotella dentalis 197 1 52227 0 species Prevotella ruminicola 230 1 839 0 species 485 Porphyromonadaceae 2 4 1 0 171551 family 1 3 5 Porphyromonas 483 genus 836 0 1 151 Porphyromonas asaccharolytica species 0 28123 1 327 Porphyromonas gingivalis species 0 837 580 2 0 2005523 family 2 2 1 580 Paludibacter genus 0 346096 species 0 185300 1 578 Paludibacter propionicigenes 264 1 185291 0 no rank 1 Bacteroidales bacterium CF 264 species 1400053 0 815 0 family Bacteroidaceae 2972 1 6 11 10 33 1 2966 Bacteroides genus 0 816 369 Bacteroides cellulosilyticus 1 0 246787 species Bacteroides helcogenes 268 1 290053 0 species 0 817 species 617 Bacteroides fragilis 1 species 818 0 1 Bacteroides thetaiotaomicron 418 374 Bacteroides ovatus 1 0 28116 species 1 Bacteroides zoogleoformans 147 species 28119 0 266 Bacteroides caecimuris 1 0 1796613 species Bacteroides caccae 242 1 47678 0 species 0 28113 species 232 Bacteroides heparinolyticus 1 family 1853231 0 1 1 3 Odoribacteraceae 385 4 2 1 384 Odoribacter genus 0 283168 28118 0 species Odoribacter splanchnicus 380 1 Cytophagia 26521 1 27 60 768503 0 class 768507 0 order Cytophagales 26494 1 66 59 1937968 0 family Bernardetiaceae 1778 1 15 3 1 22 2 Bernardetia 1763 genus 1937972 0 1 Bernardetia litoralis 1741 species 999 0 15 16 1 4464 Hymenobacteraceae family 0 1853232 genus 0 323449 8 3 1 684 Pontibacter Pontibacter akesuensis 258 1 388950 0 species Pontibacter korlensis 418 1 400092 0 species 12 4 1 1390 Rufibacter genus 0 1379908 2 926 no rank 2639626 0 Rufibacter sp. DG15C 388 1 1379909 0 species 538 Rufibacter sp. DG31D 1 0 1379910 species 452 Rufibacter tibetensis 1 0 512763 species genus 0 89966 8 22 1 2375 Hymenobacter species 0 1411621 1 262 Hymenobacter sedentarius species 1446467 0 1 Hymenobacter swuensis 315 no rank 0 2615202 5 1776 Hymenobacter sp. DG25A 173 1 1385663 0 species 0 1385664 species 260 Hymenobacter sp. DG25B 1 501 Hymenobacter sp. PAMC 26628 1 0 1484118 species 1 Hymenobacter sp. APR13 311 species 1356852 0 1 Hymenobacter sp. PAMC 26554 531 species 1484116 0 2 946 family 0 1853234 1 2 7 Persicobacter 946 genus 59740 0 0 2664020 no rank 939 1 1 Persicobacter sp. JZB09 939 species 1085624 0 563798 0 family Cyclobacteriaceae 4176 1 9 10 0 246875 genus 700 Algoriphagus 2 4 1 species 0 1727163 1 696 Algoriphagus sp. M8-2 Echinicola 530 1 2 21 390846 0 genus 1 Echinicola vietnamensis 509 species 390884 0 68288 0 genus Cyclobacterium 1872 1 3 19 104 0 species Cyclobacterium marinum 852 1 0 320787 species 1001 Cyclobacterium amurskyense 1 0 232244 genus 1065 Belliella 2 23 1 232259 0 species Belliella baltica 1042 1 3 4 1 7568 Flammeovirgaceae family 0 200667 340671 0 no rank 5394 1 species 0 1257021 1 5394 Flammeovirgaceae bacterium 311 1 2 14 Flammeovirga 2171 genus 59739 0 1 2157 no rank 0 2637820 1 2157 Flammeovirga sp. MY04 species 0 1191459 0 1501348 family 706 Amoebophilaceae 4 9 1 0 273135 genus 247 1 2641185 0 no rank 247 1 Cardinium endosymbiont of Encarsia pergandiella 247 1 249402 0 species 281119 0 genus Candidatus Amoebophilus 450 1 2 3 Candidatus Amoebophilus asiaticus 447 1 281120 0 species 89373 0 family Cytophagaceae 5540 1 9 17 genus 0 120831 8 2 1 466 Dyadobacter 94254 0 species Dyadobacter fermentans 458 1 0 107 genus 2036 Spirosoma 6 17 1 1 Spirosoma aerolatum 485 species 1211326 0 1379870 0 species Spirosoma radiotolerans 504 1 species 1178516 0 1 Spirosoma montaniterrae 422 2057025 0 species Spirosoma sp. HA7 399 1 1 209 Spirosoma rigui species 0 564064 0 319458 genus 458 Leadbetterella 2 6 1 Leadbetterella byssophila 452 1 316068 0 species 1 2 3 Runella 1516 genus 105 0 1 Runella slithyformis 1513 species 106 0 1 2 2 Fibrella 235 genus 861914 0 2620963 0 no rank 233 1 Fibrella sp. ES10-3-2-2 233 1 1834519 0 species 820 Cytophaga 14 2 1 0 978 genus 1 806 Cytophaga hutchinsonii species 0 985 0 2762301 family 1250 2 genus 0 869806 2 16 1 1250 Marivirga 1234 Marivirga tractuosa 1 0 1006 species 1937959 0 class 1474 5 1474 5 1936988 0 order 468 2 0 89374 family genus 1007 0 1 6 2 Saprospira 468 species 1008 0 1 Saprospira grandis 462 family 0 1937961 3 4 1 1006 Haliscomenobacteraceae 1 2 6 Haliscomenobacter 1002 genus 2349 0 2350 0 species Haliscomenobacter hydrossis 996 1 1532 7 1134404 0 phylum 7 14 1 1532 Ignavibacteria class 0 795747 6 9 1 1518 Ignavibacteriales order 0 795748 1220 Ignavibacteriaceae 5 3 1 0 795749 family 1215 Ignavibacterium 3 2 1 0 795750 genus 0 591197 species 1212 Ignavibacterium album 1 family 0 1334117 2 289 289 Melioribacter 2 2 1 0 1134403 genus 1134405 0 species Melioribacter roseus 287 1 clade 0 2498710 3 295 67814 0 phylum 295 3 class 693071 0 1 3 2 Caldisericia 295 Caldisericales 293 1 4 2 693072 0 order 693073 0 family 289 1 genus 693074 0 1 289 693075 0 species Caldisericum exile 289 1 57723 0 phylum 2011 19 Acidobacteriia 1814 1 16 12 204432 0 class 204433 0 order Acidobacteriales 1459 1 8 12 1 11 9 Acidobacteriaceae 1451 family 204434 0 genus 0 392733 3 6 1 425 Terriglobus 165 Terriglobus roseus 1 0 392734 species species 0 870903 1 254 Terriglobus saanensis 1 4 3 Granulicella 505 genus 940557 0 1 Granulicella tundricola 347 species 940615 0 Granulicella mallensis 154 1 940614 0 species 2 2 1 308 Acidobacterium genus 0 33973 species 33075 0 1 Acidobacterium capsulatum 306 658061 0 genus Candidatus Koribacter 204 1 2 2 658062 0 species Candidatus Koribacter versatilis 202 1 332160 0 order 343 3 3 3 1 343 Solibacteraceae family 0 332161 Candidatus Solibacter 340 1 2 6 332162 0 genus species 0 332163 1 334 Candidatus Solibacter usitatus 1 3 1 Blastocatellia 197 class 1562566 0 genus 0 458032 1 2 1 196 Chloracidobacterium 195 Chloracidobacterium thermophilum 1 0 458033 species 8807 39 200918 0 phylum 19 39 1 8807 Thermotogae class 0 188708 1643946 0 order Kosmotogales 481 1 4 4 family 0 1643948 3 477 1 121 genus 0 1184396 species 0 1184387 1 121 Mesotoga prima 0 651456 genus 356 2 1 210 Kosmotoga pacifica species 0 1330330 species 0 651457 1 146 Kosmotoga olearia 7 7 1 3011 Petrotogales order 0 1643947 family 1643949 0 6 3004 0 28236 genus 518 1 species 0 69499 1 518 Petrotoga mobilis 160798 0 genus Marinitoga 1741 1 3 13 0 2640159 no rank 850 1 1 Marinitoga sp. 1137 850 species 1545835 0 Marinitoga piezophila 878 1 149715 0 species genus 0 1511648 9 2 1 745 Defluviitoga species 1006576 0 1 Defluviitoga tunisiensis 736 2419 0 order Thermotogales 5296 1 27 2 10 5 1 3394 Fervidobacteriaceae family 0 1643950 2420 0 genus Thermosipho 2491 1 5 11 2676525 0 no rank 1079 2 1 Thermosipho sp. 1070 557 species 1437364 0 1462747 0 species Thermosipho sp. 1063 522 1 0 2421 species 733 Thermosipho africanus 1 species 46541 0 1 Thermosipho melanesiensis 668 0 2422 genus 898 Fervidobacterium 4 4 1 species 2424 0 1 Fervidobacterium nodosum 370 165 Fervidobacterium islandicum 1 0 2423 species 93466 0 species Fervidobacterium pennivorans 359 1 1900 16 0 188709 family genus 1643951 0 1 9 5 Pseudothermotoga 974 species 0 119394 1 221 Pseudothermotoga thermarum Pseudothermotoga elfii 331 1 38322 0 species species 0 57487 1 75 Pseudothermotoga hypogea 0 177758 species 338 Pseudothermotoga lettingae 1 Thermotoga 926 1 11 19 2335 0 genus species 0 2337 1 77 Thermotoga neapolitana 4 270 no rank 0 2631113 1 89 Thermotoga sp. RQ7 species 0 126738 Thermotoga sp. 2812B 61 1 1157948 0 species 0 1157947 species 62 Thermotoga sp. Cell2 1 Thermotoga sp. RQ2 58 1 126740 0 species 93929 0 species Thermotoga petrophila 65 1 Thermotoga naphthophila 68 1 93930 0 species 1 88 Thermotoga maritima species 0 2336 42 Thermotoga caldifontis 1 0 1508419 species 0 1508420 species 297 Thermotoga profunda 1 25354 25 0 32066 phylum class 203490 0 1 19 25 Fusobacteriia 25354 0 203491 order 25335 Fusobacteriales 24 36 1 1129771 0 family Leptotrichiaceae 5656 1 6 11 0 34104 genus 1058 1 species 34105 0 1 Streptobacillus moniliformis 1058 32068 0 genus Sebaldella 796 1 1 2 795 Sebaldella termitidis 1 0 826 species 2 2 1 697 Sneathia genus 0 168808 1 695 Sneathia amnii species 0 187101 genus 32067 0 1 9 5 Leptotrichia 3099 species 40542 0 1 Leptotrichia buccalis 807 no rank 2633022 0 3 2283 0 1785996 species 762 Leptotrichia sp. oral taxon 847 1 1 Leptotrichia sp. oral taxon 498 866 species 712368 0 species 0 712357 1 655 Leptotrichia sp. oral taxon 212 203492 0 family Fusobacteriaceae 19643 1 7 12 Ilyobacter 683 1 2 1 167639 0 genus 1 682 Ilyobacter polytropus species 0 167642 9 69 1 18953 Fusobacterium genus 0 848 0 860 species 3592 Fusobacterium periodonticum 1 species 0 859 1 445 Fusobacterium necrophorum 2352 Fusobacterium varium 1 0 856 species 1 7599 Fusobacterium nucleatum species 0 851 849 0 species Fusobacterium gonidiaformans 652 1 1583098 0 species Fusobacterium hwasookii 2032 1 1188 Fusobacterium ulcerans 1 0 861 species 1 Fusobacterium mortiferum 1024 species 850 0 0 2323 no rank 655 3 1783234 0 clade 655 3 0 95818 phylum 60 1 1 60 no rank 0 1895827 species 0 2056494 1 60 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 95901 0 clade 595 2 2 595 class 0 2497643 595 2 0 2497644 order 0 2497645 family 595 2 1 2 10 Candidatus Babela 595 genus 1551504 0 1 585 Candidatus Babela massiliensis species 0 673862 200940 0 phylum 1881 8 Thermodesulfobacteria 1881 1 9 8 67799 0 class order 0 188710 7 7 1 1872 Thermodesulfobacteriales 1865 Thermodesulfobacteriaceae 8 6 1 0 188711 family genus 241192 0 1 264 0 171695 species 264 Thermodesulfatator indicus 1 1740 0 genus Thermodesulfobacterium 1323 1 3 1 species 0 1741 1 384 Thermodesulfobacterium commune 1 Thermodesulfobacterium geofontis 938 species 1295609 0 genus 444090 0 1 270 0 1653476 species 270 Caldimicrobium thiodismutans 1 55 19300 phylum 0 203691 Spirochaetia 19300 1 62 55 203692 0 class 3033 9 1643688 0 order 0 170 family 3033 Leptospiraceae 9 26 1 0 338321 genus 135 Turneriella 2 2 1 0 29510 species 133 Turneriella parva 1 171 0 genus Leptospira 2872 1 6 17 0 172 species 497 Leptospira biflexa 1 1 510 Leptospira borgpetersenii species 0 174 species 173 0 1 Leptospira interrogans 1230 1 Leptospira alstonii 337 species 28452 0 0 28183 species 281 Leptospira santarosai 1 0 136 order 11849 Spirochaetales 38 25 1 family 1643685 0 1 17 16 Borreliaceae 7819 3393 Borreliella 200 8 1 0 64895 genus Borreliella afzelii 408 1 29518 0 species 0 664662 species 372 Borreliella bavariensis 1 1 Borreliella burgdorferi 458 species 139 0 741 Borreliella garinii 1 0 29519 species species 0 64897 1 384 Borreliella bissettii 1 373 Borreliella valaisiana species 0 62088 457 Borrelia mayonii 1 0 1674146 species Borrelia 4410 1 78 8 138 0 genus 0 143 species 309 Borrelia anserina 1 species 0 47466 1 883 Borrelia miyamotoi 1 Borrelia parkeri 359 species 141 0 1352 Borrelia duttonii 1 0 40834 species species 142 0 1 Borrelia turicatae 418 1 618 Borrelia recurrentis species 0 44449 Borrelia hermsii 393 1 140 0 species 20 20 1 4005 Spirochaetaceae family 0 137 239 1 1911556 0 genus 55206 0 species Sediminispirochaeta smaragdinae 239 1 genus 0 1616789 1 818 1307761 0 species Salinispira pacifica 818 1 2214 Treponema 12 11 1 0 157 genus 1 Treponema succinifaciens 287 species 167 0 158 0 species Treponema denticola 260 1 309 Treponema pedis 1 0 409322 species 1 286 Treponema primitia species 0 88058 Treponema pallidum 77 1 160 0 species 191 Treponema caldarium 1 0 215591 species species 0 221027 1 302 Treponema putidum 0 81028 species 114 Treponema brennaborense 1 species 0 53435 1 88 Treponema paraluiscuniculi 0 150829 species 133 Treponema azotonutricium 1 1 156 no rank 0 2638727 1 156 Treponema sp. OMZ 838 species 0 1539298 361 3 399320 0 genus 95 Sphaerochaeta globosa 1 0 1131703 species 1131707 0 species Sphaerochaeta pleomorpha 153 1 species 0 273376 1 113 Sphaerochaeta coccoides 0 146 genus 353 2 1 148 Spirochaeta africana species 0 46355 species 154 0 1 Spirochaeta thermophila 205 order 0 1643686 11 7 1 4356 Brachyspirales Brachyspiraceae 4345 1 6 4 143786 0 family genus 0 29521 21 5 1 4341 Brachyspira species 0 84378 1 914 Brachyspira murdochii species 0 84377 1 1040 Brachyspira intermedia 159 0 species Brachyspira hyodysenteriae 1080 1 1286 Brachyspira pilosicoli 1 0 52584 species 8 3087 phylum 200930 0 Deferribacteres 3087 1 4 8 68337 0 class Deferribacterales 3083 1 7 10 191393 0 order family 0 191394 6 7 1 3073 Deferribacteraceae genus 117999 0 1 3 2 Denitrovibrio 318 0 118000 species 315 Denitrovibrio acetiphilus 1 genus 2351 0 1 832 0 2352 species 832 Flexistipes sinusarabici 1 545865 0 genus 543 1 0 477976 species 543 Calditerrivibrio nitroreducens 1 53572 0 genus 1373 1 1 1373 Deferribacter desulfuricans species 0 197162 74152 0 phylum Elusimicrobia 1277 1 9 10 class 641853 0 2 226 226 2 641854 0 order family 641876 0 1 1 2 Elusimicrobiaceae 226 1 225 genus 0 423604 423605 0 species Elusimicrobium minutum 225 1 447830 0 class Endomicrobia 698 1 2 5 1 4 1 696 Endomicrobiales order 0 1783344 695 3 0 1783343 family 1 1 3 Endomicrobium 695 genus 1408194 0 species 0 1408204 1 315 Candidatus Endomicrobium trichonymphae 0 1408281 species 379 Endomicrobium proavitum 1 no rank 0 99260 1 343 species 167965 0 1 uncultured Termite group 1 bacterium 343 Proteobacteria 1025907 1 248 2039 1224 0 phylum 372 5 580370 0 class 0 580371 order 372 Mariprofundales 5 5 1 580372 0 family Mariprofundaceae 367 1 4 1 Mariprofundus 366 1 11 3 377315 0 genus 1 Mariprofundus aestuarium 202 species 1921086 0 1 153 Mariprofundus ferrinatatus species 0 1921087 0 1553900 class 2692 Oligoflexia 2 12 1 Bacteriovoracales 1446 1 6 5 2024979 0 order 462 2 0 263369 family genus 146784 0 1 2 2 Bacteriovorax 462 0 960 species 460 Bacteriovorax stolpii 1 family 1652132 0 1 1 3 Halobacteriovoraceae 979 978 Halobacteriovorax 4 2 1 0 1652133 genus 97084 0 species Halobacteriovorax marinus 974 1 Bdellovibrionales 1244 1 5 12 213481 0 order 213483 0 family Bdellovibrionaceae 1232 1 7 4 genus 0 958 10 3 1 1225 Bdellovibrio species 0 453816 1 387 Bdellovibrio exovorus 0 959 species 828 Bdellovibrio bacteriovorus 1 1 272 566 Alphaproteobacteria 358287 class 28211 0 388 2 0 2800059 order 2 388 family 0 2800061 74317 0 genus Maricaulis 388 1 8 2 Maricaulis maris 380 1 74318 0 species 1 55 28 Rickettsiales 26315 order 766 0 2 801 family 1328881 0 genus 0 411566 2 11 1 801 Candidatus Midichloria 234827 0 species Candidatus Midichloria mitochondrii 790 1 0 1699067 no rank 1849 1 Rickettsiales bacterium Ac37b 1849 1 1528098 0 species 10 28 1 10911 Rickettsiaceae family 0 775 25 10216 tribe 0 33988 1 2 1 1489 Orientia genus 0 69474 Orientia tsutsugamushi 1488 1 784 0 species Rickettsia 8727 1 831 23 780 0 genus 3372 17 114277 0 species group 0 35792 species 92 Rickettsia parkeri 1 0 109232 species 384 Rickettsia monacensis 1 77 Rickettsia japonica 1 0 35790 species 0 35788 species 82 Rickettsia africae 1 1 97 Rickettsia heilongjiangensis species 0 226665 1 Rickettsia slovaca 73 species 35794 0 1 Rickettsia rhipicephali 149 species 33992 0 33991 0 species Rickettsia montanensis 97 1 47589 0 species Rickettsia peacockii 269 1 Rickettsia conorii 79 1 781 0 species 1 Rickettsia akari 394 species 786 0 1 Rickettsia rickettsii 82 species 783 0 787 0 species Rickettsia australis 585 1 Rickettsia felis 549 1 42862 0 species species 33989 0 1 Rickettsia amblyommatis 212 0 1105106 species 64 Rickettsia philipii 1 Rickettsia massiliae 87 1 35791 0 species 2 1694 species group 0 1129742 Rickettsia canadensis 641 1 788 0 species 1053 Rickettsia bellii 1 0 33990 species 2 1880 species group 0 114292 1 Rickettsia prowazekii 926 species 782 0 1 Rickettsia typhi 954 species 785 0 no rank 114295 0 1 950 Rickettsia endosymbiont of Bemisia tabaci 950 1 337479 0 species 1 2 2 Candidatus Phycorickettsia 685 genus 2115980 0 0 2115978 species 683 Candidatus Phycorickettsia trachydisci 1 Anaplasmataceae 12726 1 22 23 942 0 family genus 33993 0 1 4 10 Neorickettsia 871 1 Neorickettsia risticii 317 species 950 0 species 951 0 1 Neorickettsia sennetsu 276 species 33994 0 1 Neorickettsia helminthoeca 268 5621 Ehrlichia 38 6 1 0 943 genus 106178 0 species group 4529 4 1 Ehrlichia ruminantium 1322 species 779 0 Ehrlichia chaffeensis 1021 1 945 0 species 1 Ehrlichia muris 1005 species 35795 0 1181 Ehrlichia canis 1 0 944 species no rank 0 106181 1 1054 species 0 391036 1 1054 Ehrlichia sp. HF 8 5666 tribe 952 0 genus 0 953 8 102 1 5666 Wolbachia 7 5564 no rank 0 2640676 Wolbachia endosymbiont of Onchocerca volvulus 642 1 77551 0 species 163164 0 species Wolbachia endosymbiont of Drosophila melanogaster 719 1 species 0 66084 1 767 Wolbachia sp. wRi 0 80849 species 810 Wolbachia endosymbiont of Brugia malayi 1 1 541 Wolbachia endosymbiont of Cimex lectularius species 0 246273 1438 Wolbachia endosymbiont of Drosophila simulans 1 0 77038 species 647 Wolbachia endosymbiont of Onchocerca ochengi 1 0 100901 species Anaplasma 546 1 7 4 768 0 genus 271 1 106179 0 species group Anaplasma phagocytophilum 271 1 948 0 species 0 769 species 125 Anaplasma centrale 1 1 Anaplasma marginale 143 species 770 0 22 9 1 163424 Pelagibacterales order 0 54526 genus 0 2045213 30 2 1 10682 Candidatus Fonsibacter species 1925548 0 1 Candidatus Fonsibacter ubiquis 10652 1655514 0 family Pelagibacteraceae 152720 1 60 6 82204 2 0 1655516 no rank 1 alpha proteobacterium HIMB59 11112 species 744985 0 species 0 859653 1 71092 alpha proteobacterium HIMB5 1 27 3 Candidatus Pelagibacter 70456 genus 198251 0 species 198252 0 1 Candidatus Pelagibacter ubique 59718 no rank 0 2647897 1 10711 1002672 0 species Candidatus Pelagibacter sp. IMCC9063 10711 1 313 Magnetococcales 4 4 1 0 1191478 order 3 2 1 309 Magnetococcaceae family 0 1191479 2 6 1 307 Magnetococcus genus 0 162171 species 0 1124597 1 301 Magnetococcus marinus 154 67 1 22262 Rhodospirillales order 0 204441 0 41295 family 13893 Rhodospirillaceae 114 31 1 191 0 genus Azospirillum 3496 1 5 81 0 528244 species 775 Azospirillum thiophilum 1 382 Azospirillum humicireducens 1 0 1226968 species 0 192 species 1091 Azospirillum brasilense 1 species 0 193 1 1167 Azospirillum lipoferum genus 0 1543705 9 2 1 611 Nitrospirillum 1 602 Nitrospirillum amazonense species 0 28077 3 20 1 1294 Thalassospira genus 0 168934 species 0 220697 1 682 Thalassospira xiamenensis 1 Thalassospira sp. CSC3H3 592 species 2048283 0 genus 1263978 0 1 2 2 Candidatus Endolissoclinum 2408 species 0 1263979 1 2406 Candidatus Endolissoclinum faulkneri 426 Magnetospira 2 4 1 0 1182780 genus 422 1 0 2685734 no rank 1288970 0 species Magnetospira sp. QH-2 422 1 548 Niveispirillum 9 2 1 0 1543704 genus 1 Niveispirillum cyanobacteriorum 539 species 1612173 0 1081 0 genus Rhodospirillum 1008 1 18 3 1 Rhodospirillum rubrum 421 species 1085 0 Rhodospirillum centenum 569 1 34018 0 species 1 2 2 Haematospirillum 370 genus 1804663 0 368 Haematospirillum jordaniae 1 0 1549855 species 9 2 1 749 Tistrella genus 0 171436 species 0 171437 1 740 Tistrella mobilis 60 5 1 2477 Magnetospirillum genus 0 13134 55518 0 species Magnetospirillum gryphiswaldense 722 1 2617991 0 no rank 1202 2 545 Magnetospirillum sp. XM-1 1 0 1663591 species 657 Magnetospirillum sp. ME-1 1 0 1639348 species Magnetospirillum magneticum 493 1 84159 0 species 1612157 0 genus Pararhodospirillum 392 1 6 2 species 0 1084 1 386 Pararhodospirillum photometricum family 0 433 92 35 1 8215 Acetobacteraceae 260 Kozakia 1 2 1 0 153497 genus 1 259 Kozakia baliensis species 0 153496 1 3 23 Acidiphilium 635 genus 522 0 Acidiphilium cryptum 296 1 524 0 species 316 Acidiphilium multivorum 1 0 62140 species 434 0 genus Acetobacter 2998 1 28 8 species 0 65959 1 251 Acetobacter pomorum 0 104102 species 439 Acetobacter tropicalis 1 211 1 151157 0 subgenus species 435 0 1 Acetobacter aceti 211 species 1633874 0 1 Acetobacter oryzifermentans 229 446692 0 species Acetobacter senegalensis 264 1 1293 Acetobacter pasteurianus 1 0 438 species species 0 1076596 1 283 Acetobacter persici genus 0 125216 19 3 1 1012 Roseomonas 1 522 no rank 0 2617492 1 Roseomonas sp. FDAARGOS_362 522 species 2018065 0 0 257708 species 471 Roseomonas gilardii 1 Gluconobacter 550 1 3 8 441 0 genus 1 367 Gluconobacter oxydans species 0 442 1 Gluconobacter albidus 175 species 318683 0 1 2 8 Parasaccharibacter 175 genus 1602345 0 0 1510841 species 167 Parasaccharibacter apium 1 genus 89583 0 1 2 1 Gluconacetobacter 295 294 Gluconacetobacter diazotrophicus 1 0 33996 species 0 364409 genus 648 Granulibacter 2 8 1 364410 0 species Granulibacter bethesdensis 640 1 2 6 1 171 Neoasaia genus 0 320496 165 Neoasaia chiangmaiensis 1 0 320497 species Asaia 199 1 1 2 91914 0 genus 1 198 Asaia bogorensis species 0 91915 0 1434011 genus 1180 Komagataeibacter 5 23 1 0 1177712 species 267 Komagataeibacter medellinensis 1 1 Komagataeibacter nataicola 326 species 265960 0 0 28448 species 399 Komagataeibacter xylinus 1 0 33995 species 165 Komagataeibacter europaeus 1 Caulobacterales 5041 1 20 21 204458 0 order 64 19 1 5020 Caulobacteraceae family 0 76892 genus 0 76890 2 5 1 272 Asticcacaulis 267 Asticcacaulis excentricus 1 0 78587 species 65 7 1 1769 Brevundimonas genus 0 41275 333 Brevundimonas subvibrioides 1 0 74313 species 1 Brevundimonas vesicularis 258 species 41276 0 903 3 0 2622653 no rank Brevundimonas sp. DS20 264 1 1532555 0 species 1 214 Brevundimonas sp. GW460-12-10-14-LB2 species 0 1827469 species 0 1938605 1 425 Brevundimonas sp. LM2 1 210 Brevundimonas naejangsanensis species 0 588932 0 20 genus 400 Phenylobacterium 8 2 1 0 284016 species 392 Phenylobacterium zucineum 1 1 6 44 Caulobacter 2251 genus 75 0 species 0 155892 1 696 Caulobacter vibrioides species 69666 0 1 Caulobacter mirabilis 394 69395 0 species Caulobacter henricii 326 1 0 2648921 no rank 457 1 1 457 Caulobacter sp. K31 species 0 366602 88688 0 species Caulobacter segnis 334 1 81440 0 no rank 264 1 species 0 1759059 1 264 Caulobacteraceae bacterium OTSz_A_272 0 204455 order 31892 Rhodobacterales 97 88 1 family 0 31989 483 87 1 31795 Rhodobacteraceae genus 0 159345 1 460 0 159346 species 460 Roseibacterium elongatum 1 genus 0 2433 6 3 1 997 Roseobacter 1 Roseobacter denitrificans 492 species 2434 0 0 42443 species 499 Roseobacter litoralis 1 0 2211641 genus 583 1 species 0 245188 1 583 Loktanella vestfoldensis 961 2 0 263377 genus no rank 2640570 0 1 491 491 Yangia sp. CCB-MM3 1 0 1792508 species Thiobacimonas profunda 470 1 1229727 0 species 285107 0 genus Thioclava 392 1 3 2 1915078 0 species Thioclava nitratireducens 389 1 genus 0 875170 5 14 1 2068 Celeribacter species 0 1208324 1 699 Celeribacter indicus species 1411902 0 1 Celeribacter manganoxidans 647 species 0 1758178 1 357 Celeribacter ethanolicus Celeribacter marinus 351 1 1397108 0 species 367771 0 genus Marinovum 617 1 3 2 species 0 42444 1 614 Marinovum algicola 1 7 2 Jannaschia 411 genus 188905 0 404 1 2645469 0 no rank species 290400 0 1 Jannaschia sp. CCS1 404 1 4 4 Octadecabacter 1468 genus 53945 0 0 1217908 species 646 Octadecabacter antarcticus 1 1 Octadecabacter arcticus 515 species 53946 0 species 1458307 0 1 Octadecabacter temperatus 303 Pannonibacter 443 1 2 9 227873 0 genus 0 121719 species 434 Pannonibacter phragmitetus 1 genus 309512 0 1 2 3 Dinoroseobacter 483 215813 0 species Dinoroseobacter shibae 480 1 3258 Paracoccus 9 40 1 0 265 genus 0 34003 species 344 Paracoccus aminophilus 1 1 450 Paracoccus denitrificans species 0 266 species 1077935 0 1 Paracoccus zhejiangensis 406 458 1 0 246570 no rank 1529068 0 species Paracoccus sp. BM15 458 1 0 147645 species 531 Paracoccus yeei 1 species 0 2065379 1 366 Paracoccus sp. CBA4604 363 Paracoccus aminovorans 1 0 34004 species species 0 1945662 1 300 Paracoccus contaminans 0 245186 genus 2 Loktanella 1 6 3 1 1003 Sulfitobacter genus 0 60136 498 Sulfitobacter pseudonitzschiae 1 0 1402135 species no rank 196795 0 1 499 0 1917485 species 499 Sulfitobacter sp. AM1-D1 1 genus 119541 0 1 2 5 Rhodobaca 399 Rhodobaca barguzinensis 394 1 441209 0 species 10 3 1 1145 Ruegeria genus 0 97050 1 404 no rank 0 2625375 1 Ruegeria sp. TM1040 404 species 292414 0 species 89184 0 1 Ruegeria pomeroyi 731 0 1649279 genus 442 1 442 Ruegeria mobilis 1 0 379347 species 2 757 no rank 58840 0 0 2033435 species 368 Rhodobacteraceae bacterium QY30 1 species 1904441 0 1 Rhodobacteraceae bacterium 389 Rhodovulum 1709 1 27 4 34008 0 genus 760 Rhodovulum sulfidophilum 1 0 35806 species 2631432 0 no rank 922 2 0 1564506 species 475 Rhodovulum sp. P5 1 0 308754 species 447 Rhodovulum sp. MB263 1 1759396 0 genus 297 1 2622455 0 no rank 297 1 species 1920883 0 1 Marivivens sp. JLT3646 297 567 1 0 191028 genus species 133924 0 1 Leisingera methylohalidivorans 567 genus 74030 0 1 6 2 Roseovarius 477 215743 0 species Roseovarius mucosus 471 1 genus 0 1060 21 5 1 2228 Rhodobacter 858 2 196779 0 no rank 0 1850250 species 418 Rhodobacter sp. LPB0142 1 Rhodobacter sp. CZR27 440 1 2033869 0 species 363 Rhodobacter capsulatus 1 0 1061 species Rhodobacter sphaeroides 986 1 1063 0 species 1 2 6 Halocynthiibacter 447 genus 1579315 0 species 1579316 0 1 Halocynthiibacter arcticus 441 genus 1097466 0 1 4 2 Defluviimonas 486 0 1335048 species 482 Defluviimonas alba 1 299261 0 genus Tateyamaria 480 1 2 2 1 478 Tateyamaria omphalii species 0 299262 genus 0 74032 3 2 1 447 Antarctobacter 1 444 Antarctobacter heliothermus species 0 74033 92944 0 genus Ketogulonicigenium 556 1 6 3 species 0 92947 1 242 Ketogulonicigenium robustum 0 92945 species 308 Ketogulonicigenium vulgare 1 1 496 genus 58842 0 496 1 2624628 0 no rank 496 Sagittula sp. P11 1 0 2009329 species genus 1284657 0 1 687 1284658 0 species Planktomarina temperata 687 1 1 5 52 Phaeobacter 3954 genus 302485 0 1580596 0 species Phaeobacter piscinae 881 1 1 1012 Phaeobacter gallaeciensis species 0 60890 1 Phaeobacter inhibens 1595 species 221822 0 species 1844006 0 1 Phaeobacter porticola 414 genus 360528 0 1 4 2 Pelagibaca 529 species 0 1250539 1 525 Pelagibaca abyssi Confluentimicrobium 588 1 4 2 1609958 0 genus no rank 2643318 0 1 584 584 Confluentimicrobium sp. EMB200-NS6 1 0 1609966 species genus 478070 0 1 49 4 Labrenzia 1475 Labrenzia aggregata 490 1 187304 0 species 936 2 0 2648686 no rank 0 2021862 species 458 Labrenzia sp. VG12 1 478 Labrenzia sp. CP4 1 0 1674922 species Rhizobiales 76252 1 212 415 356 0 order 47 19 1 4369 Hyphomicrobiaceae family 0 45401 1 2 7 Pelagibacterium 335 genus 1082930 0 531813 0 species Pelagibacterium halotolerans 328 1 1 2 11 Rhodomicrobium 263 genus 1068 0 0 1069 species 252 Rhodomicrobium vannielii 1 genus 29407 0 1 2 8 Rhodoplanes 514 2619116 0 no rank 506 1 species 674703 0 1 Rhodoplanes sp. Z2-YC6860 506 0 81 genus 1196 Hyphomicrobium 33 4 1 species 53399 0 1 Hyphomicrobium denitrificans 355 species 0 1427356 1 236 Hyphomicrobium nitrativorans 0 2619925 no rank 572 1 species 0 717785 1 572 Hyphomicrobium sp. MC1 313 Filomicrobium 3 2 1 0 119044 genus 1 Candidatus Filomicrobium marinum 310 species 1608628 0 419 Blastochloris 5 2 1 0 59282 genus 414 Blastochloris viridis 1 0 1079 species 4 53 1 1282 Devosia genus 0 46913 3 1229 no rank 196773 0 species 1736675 0 1 Devosia sp. A16 535 336 Devosia sp. I507 1 0 2083786 species species 1643450 0 1 Devosia sp. H5989 358 Methylobacteriaceae 6269 1 15 26 119045 0 family 400 Microvirga 2 7 1 0 186650 genus 1882682 0 species Microvirga ossetica 393 1 1 154 9 Methylobacterium 3194 genus 407 0 2615210 0 no rank 1126 3 1 Methylobacterium sp. 4-46 515 species 426117 0 1 285 Methylobacterium sp. AMS5 species 0 925818 1 326 Methylobacterium sp. C1 species 0 1479019 species 0 418223 1 304 Methylobacterium phyllosphaerae 0 114616 species 525 Methylobacterium nodulans 1 1 Methylobacterium radiotolerans 373 species 31998 0 1 310 Methylobacterium oryzae species 0 334852 Methylobacterium aquaticum 402 1 270351 0 species genus 2282523 0 3 2649 0 223967 species 632 Methylobacterium populi 1 0 29429 species 272 Methylobacterium zatmanii 1 1 Methylobacterium extorquens 1745 species 408 0 772 0 family Bartonellaceae 15790 1 18 16 genus 0 773 306 17 1 15774 Bartonella 0 33047 species 1026 Bartonella vinsonii 1 1 Bartonella clarridgeiae 1078 species 56426 0 1 Bartonella bacilliformis 1016 species 774 0 species 1318743 0 1 Bartonella ancashensis 891 species 0 33045 1 966 Bartonella grahamii 6366 6 0 2645622 no rank 1 1049 Bartonella sp. WD16.2 species 0 1933904 species 0 1933910 1 1031 Bartonella sp. A1379B 0 1933906 species 1048 Bartonella sp. JB15 1 species 0 1933907 1 1047 Bartonella sp. JB63 515256 0 species Bartonella sp. 1-1C 1122 1 0 1933912 species 1069 Bartonella sp. Raccoon60 1 species 0 85701 1 1033 Bartonella tribocorum 973 Bartonella henselae 1 0 38323 species 1 547 Bartonella australis species 0 388640 1686310 0 species Bartonella apis 779 1 species 0 803 1 793 Bartonella quintana family 0 31993 6 5 1 968 Methylocystaceae 133 0 genus Methylocystis 593 1 3 25 0 655015 species 263 Methylocystis bryophila 1 2625913 0 no rank 305 1 0 187303 species 305 Methylocystis sp. SC2 1 0 425 genus 370 Methylosinus 3 2 1 species 0 426 1 367 Methylosinus trichosporium family 0 119043 4 3 1 568 Rhodobiaceae genus 0 256616 16 2 1 564 Parvibaculum Parvibaculum lavamentivorans 548 1 256618 0 species family 0 255475 7 7 1 1483 Aurantimonadaceae 351 Aureimonas 2 15 1 0 414371 genus 2615206 0 no rank 336 1 336 Aureimonas sp. AU20 1 0 1349819 species 1125 Martelella 40 4 1 0 293088 genus Martelella mediterranea 400 1 293089 0 species 291 Martelella endophytica 1 0 1486262 species no rank 0 2629616 1 394 0 686597 species 394 Martelella sp. AD-3 1 896 Beijerinckiaceae 5 5 1 0 45404 family genus 0 532 2 6 1 577 Beijerinckia 1 571 Beijerinckia indica species 0 533 genus 0 120652 2 3 1 314 Methylocella 199596 0 species Methylocella silvestris 311 1 1 120 55 Rhizobiaceae 20525 family 82115 0 Shinella 493 1 2 4 323620 0 genus 0 2643062 no rank 489 1 species 879274 0 1 Shinella sp. HZN7 489 10 4155 no rank 0 227292 65 7 1 3467 Sinorhizobium genus 0 28105 1 Sinorhizobium medicae 318 species 110321 0 2 766 no rank 0 2613772 species 794846 0 1 Sinorhizobium sp. CCBAU 05631 351 1 415 Sinorhizobium sp. RAC02 species 0 1842534 species 0 382 1 846 Sinorhizobium meliloti 1 1088 species group 0 663276 1 Sinorhizobium fredii 1088 species 380 0 species 0 194963 1 384 Sinorhizobium americanum 106591 0 genus Ensifer 688 1 4 3 1 291 Ensifer sojae species 0 716925 Ensifer adhaerens 393 1 106592 0 species 36 11740 no rank 227290 0 1 7 44 Agrobacterium 3151 genus 357 0 2 1795 species group 1183400 0 0 1176649 species 247 Agrobacterium fabrum 1 1 1548 Agrobacterium tumefaciens species 0 358 728 2 0 2632611 no rank species 861208 0 1 Agrobacterium sp. H13-3 250 478 Agrobacterium sp. RAC06 1 0 1842536 species species 373 0 1 Agrobacterium vitis 319 species 0 359 1 265 Agrobacterium rhizogenes Rhizobium 8049 1 27 516 379 0 genus 1 791 Rhizobium phaseoli species 0 396 0 29449 species 906 Rhizobium etli 1 1 310 Rhizobium tropici species 0 398 species 0 384 1 1867 Rhizobium leguminosarum 56730 0 species Rhizobium gallicum 469 1 no rank 0 2613769 21 3190 237 Rhizobium sp. CIAT894 1 0 2020312 species 1703961 0 species Rhizobium sp. N1314 52 1 species 1981173 0 1 Rhizobium sp. NXC14 183 species 0 1703966 1 52 Rhizobium sp. N731 1703965 0 species Rhizobium sp. N6212 7 1 species 1703960 0 1 Rhizobium sp. N113 3 0 1571470 species 278 Rhizobium sp. ACO-34A 1 0 424182 species 243 Rhizobium sp. IRBG74 1 species 0 1125847 1 258 Rhizobium sp. NT-26 species 0 1703964 1 7 Rhizobium sp. N621 0 1703962 species 6 Rhizobium sp. N1341 1 1 319 Rhizobium sp. 10195 species 0 2028343 2020311 0 species Rhizobium sp. Kim5 246 1 Rhizobium sp. TAL182 77 1 2020313 0 species 0 1301032 species 230 Rhizobium sp. IE4771 1 195 Rhizobium sp. Y9 1 0 1914541 species species 0 1703969 1 275 Rhizobium sp. N324 4 Rhizobium sp. N871 1 0 1703968 species 1 204 Rhizobium sp. S41 species 0 1869170 0 2048897 species 309 Rhizobium sp. NXC24 1 0 1703967 species 5 Rhizobium sp. N741 1 genus 1525371 0 1 5 2 Neorhizobium 540 species 399 0 1 Neorhizobium galegae 535 genus 0 34019 6 44 1 4017 Liberibacter species 0 309868 1 837 Candidatus Liberibacter americanus 1273132 0 species Liberibacter crescens 1082 1 1 Candidatus Liberibacter asiaticus 612 species 34021 0 species 556287 0 1 Candidatus Liberibacter solanacearum 737 species 34020 0 1 Candidatus Liberibacter africanus 705 118882 0 family Brucellaceae 3261 1 20 7 0 234 genus 1280 Brucella 365 14 1 1 Brucella ovis 15 species 236 0 120577 0 species Brucella ceti 63 1 species 0 29459 1 37 Brucella melitensis 2632610 0 no rank 299 4 93 Brucella sp. 09RB8471 1 0 1149952 species Brucella sp. 141012304 92 1 1885919 0 species 0 1891098 species 25 Brucella sp. 2002734562 1 1 Brucella sp. 09RB8910 89 species 1844051 0 species 444163 0 1 Brucella microti 29 Brucella pinnipedialis 80 1 120576 0 species 1 Brucella abortus 75 species 235 0 166 Brucella suis 1 0 29461 species 981386 0 species Brucella vulpis 82 1 0 36855 species 69 Brucella canis 1 0 528 genus 1974 Ochrobactrum 26 5 1 species 0 529 1 314 Ochrobactrum anthropi 1 551 Ochrobactrum pseudogrignonense species 0 419475 species 571256 0 1 Ochrobactrum pituitosum 733 Ochrobactrum sp. A44 350 1 271865 0 species 899 Chelatococcaceae 4 7 1 0 2036754 family genus 0 28209 27 3 1 892 Chelatococcus no rank 0 2638111 1 461 1 461 Chelatococcus sp. CO-6 species 0 1702325 0 444444 species 404 Chelatococcus daeguensis 1 37 20 1 7022 Phyllobacteriaceae family 0 69277 genus 0 245876 2 11 1 439 Nitratireductor species 472175 0 1 Nitratireductor basaltis 428 2 3 1 360 Phyllobacterium genus 0 28100 1867719 0 species Phyllobacterium zundukense 357 1 11 2 1 420 Aminobacter genus 0 31988 409 Aminobacter aminovorans 1 0 83263 species Chelativorans 291 1 24 2 449972 0 genus no rank 0 2643807 1 267 1 267 Chelativorans sp. BNC1 species 0 266779 1 18 2 Hoeflea 577 genus 274591 0 1 559 no rank 2614931 0 1 559 Hoeflea sp. IMCC20628 species 0 1620421 143 9 1 4898 Mesorhizobium genus 0 68287 483 Mesorhizobium amorphae 1 0 71433 species no rank 0 325217 1 741 species 0 278153 1 741 Mesorhizobium sp. WSM1497 0 593909 species 538 Mesorhizobium opportunistum 1 527 Mesorhizobium australicum 1 0 536018 species Mesorhizobium sp. B7 565 1 1670800 0 species species 0 39645 1 819 Mesorhizobium ciceri 1 Mesorhizobium japonicum 539 species 2066070 0 species 0 381 1 543 Mesorhizobium loti no rank 0 119042 6 1288 354 Pseudorhodoplanes 2 14 1 0 1734920 genus 1 Pseudorhodoplanes sinuspersici 340 species 1235591 0 1 24 2 Methyloceanibacter 374 genus 1484898 0 1384459 0 species Methyloceanibacter caenitepidi 350 1 2 8 1 560 Hartmannibacter genus 0 1572860 Hartmannibacter diazotrophicus 552 1 1482074 0 species 0 335928 family 1338 Xanthobacteraceae 18 7 1 8 2 1 380 Azorhizobium genus 0 6 species 7 0 1 Azorhizobium caulinodans 372 279 0 genus Xanthobacter 596 1 10 2 1 Xanthobacter autotrophicus 586 species 280 0 genus 0 152053 2 8 1 344 Starkeya 921 0 species Starkeya novella 336 1 1 76 26 Bradyrhizobiaceae 11161 family 41294 0 85413 0 genus Bosea 1722 1 5 44 species 0 1526658 1 502 Bosea vaviloviae 3 1176 no rank 0 2653178 Bosea sp. AS-1 398 1 2015316 0 species species 1842539 0 1 Bosea sp. RAC05 462 0 1792307 species 316 Bosea sp. PAMC 26642 1 1 7 2 Variibacter 323 genus 1649510 0 1 316 Variibacter gotjawalensis species 0 1333996 17 3 1 622 Nitrobacter genus 0 911 215 Nitrobacter winogradskyi 1 0 913 species species 912 0 1 Nitrobacter hamburgensis 390 40136 0 genus Oligotropha 262 1 2 2 1 Oligotropha carboxidovorans 260 species 40137 0 1073 0 genus Rhodopseudomonas 2523 1 2 36 species 0 1076 1 2487 Rhodopseudomonas palustris 374 0 genus Bradyrhizobium 5633 1 11 172 0 375 species 767 Bradyrhizobium japonicum 1 819 Bradyrhizobium diazoefficiens 1 0 1355477 species 546 Bradyrhizobium oligotrophicum 1 0 44255 species species 0 1274631 1 434 Bradyrhizobium icense 6 2895 no rank 0 2631580 1 Bradyrhizobium sp. BTAi1 474 species 288000 0 115808 0 species Bradyrhizobium sp. ORS 285 409 1 1 465 Bradyrhizobium sp. SK17 species 0 2057741 species 0 1223566 1 448 Bradyrhizobium sp. CCGE-LA001 Bradyrhizobium sp. 512 1 376 0 species 1 587 Bradyrhizobium sp. ORS 278 species 0 114615 0 82117 no rank 4121 8 483 Micavibrio 2 11 1 0 213485 genus species 0 349221 1 472 Micavibrio aeruginosavorus 2710 2 0 62654 clade Candidatus Puniceispirillum 2710 1 22 2 767891 0 genus 0 767892 species 2688 Candidatus Puniceispirillum marinum 1 Phreatobacter 412 1 2 7 1632780 0 genus Phreatobacter sp. S-12 405 1 1868589 0 species 0 991903 genus 516 Polymorphum 2 28 1 Polymorphum gilvum 488 1 991904 0 species 1 6 9 Holosporales 2237 order 1921002 0 1 2 1 800 Holosporaceae family 0 44746 204454 0 no rank 799 1 species 0 86106 1 799 endosymbiont of Acanthamoeba sp. UWC8 2100208 0 family Caedimonadaceae 825 1 6 3 0 1509243 genus 819 Candidatus Nucleicultrix 2 7 1 0 1509244 species 812 Candidatus Nucleicultrix amoebiphila 1 1 3 1 Candidatus Paracaedibacteraceae 606 family 1777752 0 genus 0 1521255 5 2 1 605 Candidatus Paracaedibacter 0 91604 species 600 Candidatus Paracaedibacter acanthamoebae 1 0 204457 order 22901 Sphingomonadales 81 115 1 Erythrobacteraceae 4919 1 75 22 335929 0 family genus 0 1295327 3 18 1 464 Croceicoccus 1348774 0 species Croceicoccus naphthovorans 152 1 Croceicoccus marinus 294 1 450378 0 species 1 227 genus 0 2800685 1 227 Altererythrobacter marensis species 0 543877 1409 6 2800788 0 no rank genus 0 1041 3 97 1 809 Erythrobacter Erythrobacter litoralis 513 1 39960 0 species 1 Porphyrobacter neustonensis 199 species 1112 0 Porphyrobacter 600 1 3 44 1111 0 genus 556 2 0 2683265 no rank species 2023229 0 1 Porphyrobacter HT-58-2 260 0 1896196 species 296 Porphyrobacter sp. LM 6 1 genus 0 1855416 2 413 1 Erythrobacter seohaensis 178 species 266951 0 species 0 192812 1 235 Erythrobacter flavus genus 2800682 0 1 306 Altererythrobacter namhicola 306 1 645517 0 species 979 2 2800681 0 genus 1648404 0 species Erythrobacter atlanticus 544 1 435 Erythrobacter gangjinensis 1 0 502682 species 2 327 genus 2800686 0 species 692370 0 1 Altererythrobacter dongtanensis 144 species 1982042 0 1 Altererythrobacter mangrovi 183 361177 0 genus Altererythrobacter 719 1 85 4 1 Altererythrobacter epoxidivorans 184 species 361183 0 0 1267766 species 209 Altererythrobacter atlanticus 1 241 Altererythrobacter ishigakiensis 1 0 476157 species family 41297 0 1 58 203 Sphingomonadaceae 17867 1 6 2 Citromicrobium 270 genus 72173 0 264 1 0 2630544 no rank species 0 1634516 1 264 Citromicrobium sp. JL477 genus 1649486 0 1 289 1 289 Rhizorhabdus dicambivorans species 0 1850238 165697 0 genus Sphingopyxis 3051 1 10 79 275 Sphingopyxis granuli 1 0 267128 species 33050 0 species Sphingopyxis macrogoltabida 477 1 33052 0 species Sphingopyxis terrae 288 1 Sphingopyxis fribergensis 233 1 1515612 0 species no rank 2614943 0 4 1459 0 292913 species 251 Sphingopyxis sp. 113P3 1 1913578 0 species Sphingopyxis sp. LPB0140 622 1 1866325 0 species Sphingopyxis sp. MG 275 1 Sphingopyxis sp. QXT-31 311 1 1357916 0 species Sphingopyxis alaskensis 240 1 117207 0 species genus 2685927 0 1 265 0 1921510 species 265 Sphingomonas sp. JJ-A5 1 182 15 1 3705 Sphingobium genus 0 165695 440 Sphingobium yanoikuyae 1 0 13690 species Sphingobium hydrophobicum 243 1 1673076 0 species species 332055 0 1 Sphingobium indicum 231 species 0 120107 1 250 Sphingobium cloacae species 0 332056 1 263 Sphingobium japonicum 1 231 Sphingobium chlorophenolicum species 0 46429 species 76947 0 1 Sphingobium herbicidovorans 210 0 2611147 no rank 1468 6 Sphingobium sp. SYK-6 244 1 627192 0 species 1 Sphingobium sp. TKS 277 species 1315974 0 1843368 0 species Sphingobium sp. RAC03 253 1 species 407020 0 1 Sphingobium sp. MI1205 241 species 484429 0 1 Sphingobium sp. YBL2 260 species 1855519 0 1 Sphingobium sp. EP60837 193 1 187 Sphingobium baderi species 0 1332080 1 2 2 Zymomonas 897 genus 541 0 542 0 species Zymomonas mobilis 895 1 342 Blastomonas 2 2 1 0 150203 genus 0 2626550 no rank 340 1 Blastomonas sp. RAC04 340 1 1842535 0 species 13687 0 genus Sphingomonas 6740 1 15 120 1560345 0 species Sphingomonas panacis 284 1 397260 0 species Sphingomonas sanxanigenens 528 1 0 1609977 species 293 Sphingomonas hengshuiensis 1 1 Sphingomonas koreensis 260 species 93064 0 1 263 Sphingomonas taxi species 0 1549858 196159 0 no rank 3816 6 0 745310 species 249 Sphingomonas sp. MM-1 1 species 1938607 0 1 Sphingomonas sp. LM7 268 species 0 1030157 1 269 Sphingomonas sp. KC8 Sphingomonas sp. Cra20 265 1 1327635 0 species Sphingomonas sp. LK11 2568 1 1390395 0 species 1 197 Sphingomonas sp. NIC1 species 0 1961362 932 Sphingomonas wittichii 2 498 1 0 160791 species 0 1283312 strain 434 Sphingomonas sp. DC-6 1 152682 0 species Sphingomonas melonis 244 1 2709685 0 genus 340 1 Sphingorhabdus flavimaris 340 1 266812 0 species 0 165696 genus 1134 Novosphingobium 34 5 1 1 Novosphingobium resinovorum 307 species 158500 0 1 Novosphingobium aromaticivorans 238 species 48935 0 1 275 no rank 2644732 0 0 702113 species 275 Novosphingobium sp. PP1Y 1 205844 0 species Novosphingobium pentaromativorans 280 1 genus 0 1434046 18 3 1 631 Sphingorhabdus 2 613 no rank 0 2614947 species 1806885 0 1 Sphingorhabdus sp. M41 287 species 0 2077182 1 326 Sphingorhabdus sp. YGSMI21 6 2285 order 2800060 0 2285 Hyphomonadaceae 20 6 1 0 69657 family genus 0 85 3 28 1 1315 Hyphomonas 0 2630699 no rank 996 1 1906738 0 species Hyphomonas sp. Mor2 996 1 species 0 81032 1 291 Hyphomonas neptunium 11 2 1 950 Hirschia genus 0 2723 species 2724 0 1 Hirschia baltica 939 order 255473 0 1 4 4 Parvularculales 584 3 8 1 580 Parvularculaceae family 0 255474 genus 208215 0 1 9 2 Parvularcula 572 563 Parvularcula bermudensis 1 0 208216 species 0 28216 class 125073 Betaproteobacteria 108 349 1 order 0 80840 233 743 1 100204 Burkholderiales 4857 17 0 224471 no rank genus 0 93681 3 2 1 1321 Roseateles 76731 0 species Roseateles depolymerans 1318 1 genus 0 318147 1 2 1 516 Paucibacter 515 1 0 2642959 no rank species 1768242 0 1 Paucibacter sp. KCTC 42545 515 Methylibium 365 1 16 2 316612 0 genus species 105560 0 1 Methylibium petroleiphilum 349 478 Mitsuaria 2 2 1 0 65047 genus no rank 2648776 0 1 476 476 Mitsuaria sp. 7 1 0 1658665 species 212743 0 genus Rhizobacter 355 1 2 13 Rhizobacter gummiphilus 342 1 946333 0 species 0 413882 species 670 [Polyangium] brachysporum 1 genus 28067 0 1 2 17 Rubrivivax 415 398 Rubrivivax gelatinosus 1 0 28068 species 392 Thiomonas 2 11 1 0 32012 genus species 926 0 1 Thiomonas intermedia 381 0 88 genus 345 Leptothrix 2 7 1 34029 0 species Leptothrix cholodnii 338 1 54381 Burkholderiaceae 180 84 1 0 119060 family 0 106589 genus 6901 Cupriavidus 9 107 1 119219 0 species Cupriavidus metallidurans 1933 1 2 1684 no rank 0 2640874 0 1389192 species 744 Cupriavidus sp. USMAHM13 1 940 Cupriavidus sp. USMAA2-4 1 0 876364 species 1 711 Cupriavidus sp. USMAA1020 species 0 367825 68895 0 species Cupriavidus basilensis 1088 1 0 248026 species 358 Cupriavidus pinatubonensis 1 106590 0 species Cupriavidus necator 634 1 1 386 Cupriavidus gilardii species 0 82541 genus 0 1827195 1 452 452 Burkholderia sp. RPE64 1 0 758793 species Pandoraea 5540 1 10 58 93217 0 genus 298 Pandoraea apista 1 0 93218 species 1 560 Pandoraea oxalativorans species 0 573737 species 656179 0 1 Pandoraea faecigallinarum 253 Pandoraea pnomenusa 546 1 93220 0 species Pandoraea pulmonicola 2309 1 93221 0 species species 93222 0 1 Pandoraea sputorum 228 93219 0 species Pandoraea norimbergensis 682 1 1 404 Pandoraea vervacti species 0 656178 1 Pandoraea thiooxydans 202 species 445709 0 32008 0 genus Burkholderia 30378 1 41 756 1 Burkholderia gladioli 753 species 28095 0 1 386 Burkholderia plantarii species 0 41899 0 111527 species group 11776 7 1637831 0 species Burkholderia sp. MSMB617WGS 631 1 species 28450 0 1 Burkholderia pseudomallei 6706 1 Burkholderia oklahomensis 1005 species 342113 0 species 0 1637841 1 711 Burkholderia sp. MSMB0852 Burkholderia thailandensis 1011 1 57975 0 species 0 13373 species 1121 Burkholderia mallei 1 species 1637837 0 1 Burkholderia sp. MSMB0266 591 0 2613784 no rank 3695 11 Burkholderia sp. PAMC 26561 246 1 1795043 0 species 1 354 Burkholderia sp. CCGE1003 species 0 640512 0 758796 species 474 Burkholderia sp. RPE67 1 261 Burkholderia sp. KJ006 1 0 416344 species species 0 640510 1 384 Burkholderia sp. CCGE1001 1 461 Burkholderia sp. HB1 species 0 1678678 1 267 Burkholderia sp. Bp5365 species 0 1740162 Burkholderia sp. 2002721687 273 1 1468409 0 species 1 Burkholderia sp. Bp7605 263 species 1740163 0 species 0 1795874 1 236 Burkholderia sp. PAMC 28687 species 0 1097668 1 476 Burkholderia sp. YI23 19 12105 species group 0 87882 1 406 Burkholderia contaminans species 0 488447 1 Burkholderia multivorans 695 species 87883 0 species 0 60550 1 195 Burkholderia pyrrocinia Burkholderia ambifaria 524 1 152480 0 species Burkholderia latens 1013 1 488446 0 species species 488729 0 1 Burkholderia metallica 283 species 0 1503054 1 308 Burkholderia stagnalis 1 Burkholderia stabilis 442 species 95485 0 Burkholderia pseudomultivorans 279 1 1207504 0 species 0 488731 species 310 Burkholderia seminalis 1 species 152500 0 1 Burkholderia dolosa 299 95486 0 species Burkholderia cenocepacia 1584 1 1 311 [Pseudomonas] mesoacidophila species 0 265293 1 1262 Burkholderia lata species 0 482957 1 Burkholderia vietnamiensis 730 species 60552 0 1 Burkholderia territorii 210 species 1503055 0 Burkholderia cepacia 1861 1 292 0 species species 101571 0 1 Burkholderia ubonensis 1111 species 0 488732 1 282 Burkholderia diffusa species 0 337 1 907 Burkholderia glumae 1 204 genus 0 2571159 Paraburkholderia rhizoxinica 204 1 412963 0 species 6231 Paraburkholderia 82 12 1 0 1822464 genus no rank 0 2615204 1 480 Paraburkholderia sp. SOS3 480 1 1926494 0 species Paraburkholderia caribensis 925 1 75105 0 species 1 475 Paraburkholderia phymatum species 0 148447 1 1321 Paraburkholderia phytofirmans species 0 261302 0 134537 species 421 Paraburkholderia fungorum 1 Paraburkholderia aromaticivorans 464 1 2026199 0 species 0 169430 species 459 Paraburkholderia hospita 1 0 252970 species 405 Paraburkholderia phenoliruptrix 1 1 Paraburkholderia sprentiae 382 species 948107 0 0 36873 species 471 Paraburkholderia xenovorans 1 species 0 311230 1 346 Paraburkholderia terrae 5 40 1 3340 Ralstonia genus 0 48736 species 0 190721 1 349 Ralstonia insidiosa 305 0 species Ralstonia solanacearum 1937 1 441 Ralstonia mannitolilytica 1 0 105219 species 1 573 Ralstonia pickettii species 0 329 1 7 4 Polynucleobacter 1155 genus 44013 0 1835254 0 species Polynucleobacter duraquae 331 1 Polynucleobacter necessarius 241 1 576610 0 species species 0 576611 1 576 Polynucleobacter asymbioticus 1 59 178 Comamonadaceae 17817 family 80864 0 Ottowia 434 1 3 12 219181 0 genus 1 Ottowia sp. KADR8-3 255 species 2109914 0 167 1 2645081 0 no rank 0 1658672 species 167 Ottowia sp. oral taxon 894 1 0 1649468 genus 265 Melaminivora 9 2 1 1 256 no rank 2641902 0 2109913 0 species Melaminivora sp. SC2-9 256 1 2 2 1 206 Simplicispira genus 0 352450 1 Simplicispira sp. SC1-8 204 species 2109915 0 1 2 3 Candidatus Symbiobacter 286 genus 1436289 0 1436290 0 species Candidatus Symbiobacter mobilis 283 1 genus 12916 0 1 55 9 Acidovorax 2218 1 225 Acidovorax ebreus species 0 721785 1 Acidovorax citrulli 292 species 80869 0 0 80867 species 424 Acidovorax avenae 1 553814 0 species Acidovorax sp. NA3 197 1 2684926 0 no rank 1025 4 Acidovorax sp. T1 372 1 1858609 0 species 1842533 0 species Acidovorax sp. RAC01 232 1 0 358220 species 209 Acidovorax sp. KKS102 1 1 212 Acidovorax sp. JS42 species 0 232721 11 5 1 1148 Rhodoferax genus 0 28065 1 Rhodoferax koreense 346 species 1842727 0 277 Rhodoferax ferrireducens 1 0 192843 species 81479 0 species Rhodoferax antarcticus 315 1 1 199 Rhodoferax saidenbachensis species 0 1484693 1 49 5 Variovorax 3807 genus 34072 0 2395 Variovorax paradoxus 1 0 34073 species species 436515 0 1 Variovorax boronicumulans 373 0 663243 no rank 990 2 504 Variovorax sp. PAMC 28711 1 0 1795631 species species 2126319 0 1 Variovorax sp. PMC12 486 Comamonas 1913 1 4 9 283 0 genus species 1082851 0 1 Comamonas serinivorans 792 species 285 0 1 Comamonas testosteroni 595 0 225992 species 517 Comamonas kerstersii 1 3 3 1 1667 Polaromonas genus 0 52972 0 216465 species 524 Polaromonas naphthalenivorans 1 1 1140 no rank 0 2638319 296591 0 species Polaromonas sp. JS666 1140 1 2 417 genus 0 2490452 Comamonadaceae bacterium B1 217 1 1458426 0 species 0 1458425 species 200 Comamonadaceae bacterium A1 1 genus 174951 0 1 5 2 Ramlibacter 585 1 Ramlibacter tataouinensis 580 species 94132 0 1 1 3 Limnohabitans 419 genus 665874 0 2626134 0 no rank 418 2 1678128 0 species Limnohabitans sp. 63ED37-2 189 1 Limnohabitans sp. 103DPR2 229 1 1678129 0 species 0 364316 genus 663 Verminephrobacter 1 2 1 species 0 364317 1 662 Verminephrobacter eiseniae 1 2 1 315 Alicycliphilus genus 0 201096 species 179636 0 1 Alicycliphilus denitrificans 314 0 238749 genus 198 Diaphorobacter 1 2 1 197 Diaphorobacter polyhydroxybutyrativorans 1 0 1546149 species 1951 Delftia 47 5 1 0 80865 genus 80866 0 species Delftia acidovorans 413 1 1 427 Delftia tsuruhatensis species 0 180282 0 2613839 no rank 1064 2 Delftia sp. Cs1-4 587 1 742013 0 species species 1920191 0 1 Delftia sp. HK171 477 genus 0 47420 4 9 1 931 Hydrogenophaga 1763535 0 species Hydrogenophaga crassostreae 318 1 2 604 no rank 0 2610897 species 0 1842537 1 300 Hydrogenophaga sp. RAC07 795665 0 species Hydrogenophaga sp. PBC 304 1 genus 0 2678886 1 216 216 Melaminivora sp. SC2-7 1 0 2116657 species 68 42 1 13232 Alcaligenaceae family 0 506 1 58 6 Achromobacter 3148 genus 222 0 species 217203 0 1 Achromobacter spanius 544 346 Achromobacter insolitus 1 0 217204 species no rank 0 2626865 1 289 1758194 0 species Achromobacter sp. AONIH1 289 1 Achromobacter denitrificans 637 1 32002 0 species 1274 Achromobacter xylosoxidans 1 0 85698 species 267 1 0 1100891 genus 267 Paenalcaligenes hominis 1 0 643674 species 1472344 0 genus 354 1 1 354 Basilea psittacipulmonis species 0 1472345 genus 1921582 0 1 3 2 Orrella 252 species 1851544 0 1 Orrella dioscoreae 249 1 4 2 Oligella 303 genus 90243 0 0 90245 species 299 Oligella urethralis 1 2 4 1 1508 Alcaligenes genus 0 507 1504 Alcaligenes faecalis 1 0 511 species 0 29574 genus 1158 Taylorella 2 3 1 0 84590 species 566 Taylorella asinigenitalis 1 1 Taylorella equigenitalis 590 species 29575 0 Pusillimonas 398 1 2 2 305976 0 genus 2640016 0 no rank 396 1 1007105 0 species Pusillimonas sp. T7-7 396 1 genus 0 290425 3 8 1 611 Advenella 1 268 Advenella kashmirensis species 0 310575 302406 0 species Advenella mimigardefordensis 335 1 1 2 6 Castellaniella 207 genus 359336 0 1 Castellaniella defragrans 201 species 75697 0 Bordetella 4958 1 17 130 517 0 genus 1 Bordetella genomosp. 13 302 species 463040 0 0 1416806 species 310 Bordetella genomosp. 8 1 214 Bordetella pseudohinzii 1 0 1331258 species 1 606 Bordetella bronchiseptica species 0 518 species 0 94624 1 283 Bordetella petrii 0 520 species 405 Bordetella pertussis 1 35814 0 species Bordetella holmesii 191 1 1 239 no rank 2630031 0 239 Bordetella sp. H567 1 0 1697043 species 1 Bordetella hinzii 275 species 103855 0 1 Bordetella avium 188 species 521 0 0 463024 species 345 Bordetella genomosp. 6 1 1 Bordetella bronchialis 362 species 463025 0 species 0 123899 1 199 Bordetella trematum Bordetella flabilis 321 1 463014 0 species species 1416803 0 1 Bordetella genomosp. 9 228 Bordetella parapertussis 360 1 519 0 species 8713 Oxalobacteraceae 70 28 1 0 75682 family 1 2 1 Oxalobacter 164 genus 846 0 0 847 species 163 Oxalobacter formigenes 1 genus 0 963 30 6 1 2634 Herbaspirillum Herbaspirillum rubrisubalbicans 326 1 80842 0 species 1 328 no rank 2624150 0 species 2025949 0 1 Herbaspirillum sp. meg3 328 Herbaspirillum hiltneri 1026 1 341045 0 species 344 Herbaspirillum frisingense 1 0 92645 species 964 0 species Herbaspirillum seropedicae 580 1 Collimonas 1479 1 4 31 202907 0 genus 633 Collimonas arenae 1 0 279058 species 1 Collimonas fungivorans 407 species 158899 0 279113 0 species Collimonas pratensis 408 1 genus 0 29580 7 35 1 1948 Janthinobacterium 1227 4 0 2610881 no rank 211 Janthinobacterium sp. Marseille 1 0 375286 species species 0 1644131 1 357 Janthinobacterium sp. 1_2014MBL_MicDiv Janthinobacterium sp. B9-8 315 1 1236179 0 species 1 Janthinobacterium sp. LM6 344 species 1938606 0 1 268 Janthinobacterium agaricidamnosum species 0 55508 0 368607 species 418 Janthinobacterium svalbardensis 1 2 491 genus 0 303379 251 Herminiimonas arsenitoxidans 1 0 1809410 species Herminiimonas arsenicoxydans 240 1 204773 0 species Massilia 1927 1 6 52 149698 0 genus species 1141883 0 1 Massilia putida 395 species 0 2072590 1 395 Massilia sp. ZMN-3 1 Massilia sp. B2 390 species 2045208 0 2609279 0 no rank 695 2 species 1707785 0 1 Massilia sp. WG5 364 species 1678028 0 1 Massilia sp. NR 4-1 331 2 461 no rank 0 80841 1834205 0 species Burkholderiales bacterium YL45 292 1 1 Burkholderiales bacterium GJ-E10 169 species 1469502 0 13 5228 no rank 0 119066 33055 0 genus Kinetoplastibacterium 3923 1 18 6 species 0 994695 1 608 Candidatus Kinetoplastibacterium galatii species 994692 0 1 Candidatus Kinetoplastibacterium desouzaii 1004 1 612 Kinetoplastibacterium blastocrithidii species 0 233181 994696 0 species Candidatus Kinetoplastibacterium oncopeltii 730 1 0 33056 species 951 Candidatus Kinetoplastibacterium crithidii 1 Candidatus Profftella 792 1 1 2 1381133 0 genus 1 Candidatus Profftella armatura 791 species 669502 0 genus 0 189384 1 28 species 189385 0 1 Candidatus Tremblaya princeps 28 327159 0 genus Candidatus Accumulibacter 321 1 2 10 327160 0 species Candidatus Accumulibacter phosphatis 311 1 1 1 2 Candidatus Nasuia 164 genus 1301080 0 1 Candidatus Nasuia deltocephalinicola 163 species 1160784 0 42 54 1 7823 Nitrosomonadales order 0 32003 0 32011 family 2816 Methylophilaceae 14 14 1 0 404 genus 199 Methylobacillus 1 2 1 1 Methylobacillus flagellatus 198 species 405 0 0 81682 genus 336 Methylovorus 7 3 1 266009 0 species Methylovorus glucosotrophus 162 1 167 1 2634027 0 no rank species 887061 0 1 Methylovorus sp. MP688 167 359407 0 genus Methylotenera 856 1 3 5 1 563 Methylotenera versatilis species 0 1055487 359408 0 species Methylotenera mobilis 288 1 2 1 1 286 Methylophilus genus 0 16 no rank 0 2630143 1 285 species 0 1662285 1 285 Methylophilus sp. TWE2 genus 1679002 0 1 6 3 Candidatus Methylopumilus 1125 827 Candidatus Methylopumilus planktonicus 1 0 1581557 species 1 292 Candidatus Methylopumilus turicensis species 0 1581680 family 2008790 0 1 5 3 Thiobacillaceae 227 4 2 1 222 Thiobacillus genus 0 919 1 Thiobacillus denitrificans 218 species 36861 0 16 12 1 3263 Nitrosomonadaceae family 0 206379 35798 0 genus Nitrosospira 486 1 4 1 1 Nitrosospira briensis 168 species 35799 0 1 135 Nitrosospira multiformis species 0 1231 1288494 0 species Nitrosospira lacus 182 1 914 0 genus Nitrosomonas 2761 1 7 16 0 2609265 no rank 1055 2 0 153948 species 637 Nitrosomonas sp. AL212 1 0 261292 species 418 Nitrosomonas sp. Is79A3 1 1 Nitrosomonas europaea 254 species 915 0 1 647 Nitrosomonas communis species 0 44574 1 348 Nitrosomonas eutropha species 0 916 44577 0 species Nitrosomonas ureae 441 1 0 90627 family 562 Gallionellaceae 3 9 1 314343 0 genus 232 1 species 63745 0 1 Sideroxydans lithotrophicus 232 321 1 0 96 genus 321 Gallionella capsiferriformans 1 0 370405 species 2772226 0 family 423 4 0 935200 genus 232 Sulfuricella 2 2 1 649841 0 species Sulfuricella denitrificans 230 1 genus 1778653 0 1 1 2 Sulfuriferula 191 1 190 no rank 2637784 0 Sulfuriferula sp. AH1 190 1 1985873 0 species 478 Sterolibacteriaceae 5 7 1 0 2008793 family 253 Sulfuritalea 1 2 1 0 1054211 genus Sulfuritalea hydrogenivorans 252 1 748811 0 species 0 378210 genus 218 Methyloversatilis 2 1 1 1 217 no rank 0 2639971 Methyloversatilis sp. RAC08 217 1 1842540 0 species 562 2 33809 0 no rank 251 Betaproteobacteria bacterium GR16-43 1 0 1904640 species species 543913 0 1 beta proteobacterium CB 311 206389 0 order Rhodocyclales 3602 1 22 35 0 2008794 family 2578 Zoogloeaceae 12 39 1 12960 0 genus Azoarcus 1174 1 5 29 2629479 0 no rank 652 2 0 748247 species 292 Azoarcus sp. KH32C 1 Azoarcus sp. CIB 360 1 198107 0 species species 0 418699 1 271 Azoarcus olearius species 2067960 0 1 Azoarcus sp. SY39 222 Thauera 1365 1 34 6 33057 0 genus 1 257 Thauera humireducens species 0 1134435 2 627 no rank 2609274 0 1 327 Thauera sp. MZ1T species 0 85643 1 300 Thauera sp. K11 species 0 2005884 96773 0 species Thauera chlorobenzoica 215 1 1 232 Thauera aromatica species 0 59405 family 75787 0 1 8 6 Rhodocyclaceae 650 1 147 no rank 75788 0 species 1898103 0 1 Rhodocyclaceae bacterium 147 1 1 2 Aromatoleum 279 genus 551759 0 Aromatoleum aromaticum 278 1 551760 0 species Azospira 216 1 2 2 146937 0 genus species 0 146939 1 214 Azospira oryzae family 2008795 0 1 3 3 Azonexaceae 339 genus 73029 0 1 3 2 Dechloromonas 336 Dechloromonas aromatica 333 1 259537 0 species order 0 206351 36 56 1 7546 Neisseriales family 1499392 0 1 13 34 Chromobacteriaceae 2347 568394 0 genus Pseudogulbenkiania 241 1 2 2 1 239 no rank 2642558 0 239 Pseudogulbenkiania sp. NH8B 1 0 748280 species genus 168470 0 1 2 5 Laribacter 249 species 0 168471 1 244 Laribacter hongkongensis no rank 90153 0 4 1322 1 4 27 Chromobacterium 1322 genus 535 0 Chromobacterium vaccinii 594 1 1108595 0 species 0 536 species 343 Chromobacterium violaceum 1 358 1 0 2641838 no rank 0 2059672 species 358 Chromobacterium sp. ATCC 53434 1 genus 0 885864 11 2 1 276 Jeongeupia 0 2619593 no rank 265 1 Jeongeupia sp. USM3 265 1 1906741 0 species genus 0 187 4 2 1 225 Aquaspirillum 2620219 0 no rank 221 1 species 0 1938604 1 221 Aquaspirillum sp. LM1 5143 Neisseriaceae 34 22 1 0 481 family 482 0 genus Neisseria 2528 1 12 43 315 2 0 2623750 no rank species 655307 0 1 Neisseria sp. KEM232 155 1 Neisseria sp. 10022 160 species 1853276 0 0 326523 species 168 Neisseria zoodegmatis 1 Neisseria gonorrhoeae 249 1 485 0 species species 0 1853278 1 166 Neisseria sp. 10023 species 495 0 1 Neisseria elongata 147 Neisseria sicca 136 1 490 0 species species 28091 0 1 Neisseria weaveri 207 203 Neisseria lactamica 1 0 486 species species 0 488 1 137 Neisseria mucosa 757 Neisseria meningitidis 1 0 487 species genus 59 0 1 3 6 Vitreoscilla 751 63 0 species Vitreoscilla filiformis 214 1 2627922 0 no rank 531 1 1 Vitreoscilla sp. C1 531 species 96942 0 71 0 genus Simonsiella 348 1 1 2 347 Simonsiella muelleri 1 0 72 species 421605 0 no rank 629 1 629 Neisseriaceae bacterium DSM 100970 1 0 2052837 species 0 1193515 genus 618 Snodgrassella 3 2 1 0 1196083 species 615 Snodgrassella alvi 1 235 1 538 0 genus 235 Eikenella corrodens 1 0 539 species subphylum 68525 0 194 77635 29547 0 class Epsilonproteobacteria 46657 1 30 73 order 213849 0 1 74 66 Campylobacterales 44475 1 2 15 Helicobacteraceae 8032 family 72293 0 1 2 2 Wolinella 153 genus 843 0 151 Wolinella succinogenes 1 0 844 species 19 12 1 7877 Helicobacter genus 0 209 130 Helicobacter felis 1 0 214 species 0 76936 species 252 Helicobacter typhlonius 1 4864 Helicobacter pylori 1 0 210 species 367 Helicobacter bilis 1 0 37372 species 1 189 no rank 0 2593540 1 Helicobacter sp. MIT 01-6242 189 species 222136 0 Helicobacter cinaedi 285 1 213 0 species Helicobacter hepaticus 417 1 32025 0 species 260 Helicobacter himalayensis 1 0 1591088 species 1 256 Helicobacter acinonychis species 0 212 Helicobacter mustelae 225 1 217 0 species Helicobacter cetorum 613 1 138563 0 species 4 1245 family 0 2771471 7 3 1 1098 Sulfurimonas genus 0 202746 596 Sulfurimonas denitrificans 1 0 39766 species 495 Sulfurimonas autotrophica 1 0 202747 species 1 147 genus 0 286130 species 148813 0 1 Sulfuricurvum kujiense 147 0 2771472 family 952 5 526 Sulfurovum 3 17 1 0 265570 genus 1 Sulfurovum lithotrophicum 238 species 206403 0 2646778 0 no rank 271 1 species 0 387093 1 271 Sulfurovum sp. NBC37-1 genus 0 269260 2 1 1 426 Nitratifractor 425 Nitratifractor salsuginis 1 0 269261 species Campylobacteraceae 34172 1 41 52 72294 0 family 161 26 1 22402 Campylobacter genus 0 194 Campylobacter ureolyticus 1077 1 827 0 species 1 1333 Campylobacter pinnipediorum species 0 1965231 0 497724 species 1012 Campylobacter subantarcticus 1 1004 Campylobacter insulaenigrae 1 0 260714 species Campylobacter cuniculorum 738 1 374106 0 species 1 631 Campylobacter avium species 0 522485 species 0 76517 1 557 Campylobacter hominis 1 Campylobacter iguaniorum 494 species 1244531 0 species 200 0 1 Campylobacter curvus 122 1 Campylobacter jejuni 2099 species 197 0 Campylobacter concisus 665 1 199 0 species species 0 488546 1 877 Campylobacter peloridis no rank 2593542 0 4 2772 Campylobacter sp. RM12175 590 1 1660076 0 species 1 Campylobacter sp. RM6137 449 species 1660073 0 1 1116 Campylobacter sp. RM16704 species 0 1500960 Campylobacter sp. RM8964 617 1 1660074 0 species species 0 75658 1 345 Campylobacter lanienae 1 121 Campylobacter gracilis species 0 824 1 Campylobacter lari 2435 species 201 0 species 0 195 1 1461 Campylobacter coli 1 898 Campylobacter volucris species 0 1031542 Campylobacter helveticus 454 1 28898 0 species species 0 198 1 696 Campylobacter hyointestinalis species 196 0 1 Campylobacter fetus 991 1 Campylobacter sputorum 1459 species 206 0 0 2321108 no rank 9157 5 0 2321187 genus 2131 1 Arcobacter sp. LPB0137 2131 1 1850254 0 species genus 0 28196 42 3 1 4691 Arcobacter Arcobacter butzleri 2827 1 28197 0 species species 0 28199 1 1822 Arcobacter nitrofigilis 2321207 0 no rank 2335 1 1 2335 Arcobacter sp. L species 0 944547 Sulfurospirillum 2561 1 9 46 57665 0 genus Sulfurospirillum halorespirans 245 1 194424 0 species 1090 3 0 2618290 no rank 1 453 Sulfurospirillum sp. UCH001 species 0 1581011 species 0 220622 1 279 Sulfurospirillum sp. JPD-1 species 1986224 0 1 Sulfurospirillum sp. SL2-1 358 1 Sulfurospirillum barnesii 380 species 44674 0 149 Sulfurospirillum cavolei 1 0 366522 species 65553 0 species Sulfurospirillum deleyianum 383 1 66821 0 species Sulfurospirillum multivorans 268 1 order 0 235899 6 3 1 2152 Nautiliales 3 1 1 1863 Nautiliaceae family 0 224467 0 191291 genus 1862 Nautilia 2 2 1 1 1860 Nautilia profundicola species 0 244787 family 0 2795691 2 286 genus 0 269258 8 2 1 286 Nitratiruptor 1 278 no rank 0 2624044 species 0 387092 1 278 Nitratiruptor sp. SB155-2 class 0 28221 121 46 1 30978 Deltaproteobacteria 1259 4 213113 0 order 1259 Desulfurellaceae 5 4 1 0 117942 family 1 358 genus 0 84404 84405 0 species Hippea maritima 358 1 genus 33001 0 1 2 2 Desulfurella 896 894 Desulfurella acetivorans 1 0 33002 species 3965 Desulfovibrionales 51 26 1 0 213115 order 1 4 4 Desulfomicrobiaceae 313 family 213116 0 genus 0 898 9 3 1 309 Desulfomicrobium 1 215 Desulfomicrobium baculatum species 0 899 132132 0 species Desulfomicrobium orale 85 1 133 Desulfohalobiaceae 1 3 1 0 213117 family Desulfohalobium 132 1 1 2 45662 0 genus Desulfohalobium retbaense 131 1 45663 0 species family 0 194924 18 24 1 3468 Desulfovibrionaceae 730 Lawsonia 2 2 1 0 41707 genus 1 728 Lawsonia intracellularis species 0 29546 genus 0 2582840 1 146 1 Desulfovibrio africanus 146 species 873 0 4 4 1 507 Pseudodesulfovibrio genus 0 2035811 1 215 Pseudodesulfovibrio aespoeensis species 0 182210 1 Pseudodesulfovibrio profundus 123 species 57320 0 1 Pseudodesulfovibrio indicus 165 species 1716143 0 219 1 0 2794998 genus Desulfovibrio salexigens 219 1 880 0 species 0 872 genus 1842 Desulfovibrio 9 23 1 1 Desulfovibrio magneticus 303 species 184917 0 species 901 0 1 Desulfovibrio piger 115 1 182 Desulfovibrio alaskensis species 0 58180 110 Desulfovibrio fairfieldensis 1 0 44742 species Desulfovibrio vulgaris 584 1 881 0 species 1 Candidatus Desulfovibrio trichonymphae 96 species 1725232 0 species 876 0 1 Desulfovibrio desulfuricans 321 1 108 no rank 2593640 0 0 631220 species 108 Desulfovibrio sp. G11 1 0 213118 order 4635 Desulfobacterales 11 18 1 family 213119 0 1 9 14 Desulfobacteraceae 3476 genus 0 218207 5 2 1 1407 Desulfatibacillum 1 Desulfatibacillum alkenivorans 1402 species 259354 0 0 896 genus 698 Desulfococcus 3 7 1 0 181663 species 453 Desulfococcus oleovorans 1 897 0 species Desulfococcus multivorans 238 1 1 1078 genus 0 28222 species 28223 0 1 Desulfobacula toluolica 1078 Desulfobacterium 279 1 3 2 2295 0 genus 276 Desulfobacterium autotrophicum 1 0 2296 species 1148 Desulfobulbaceae 5 8 1 0 213121 family 109168 0 genus Desulfotalea 391 1 2 10 381 Desulfotalea psychrophila 1 0 84980 species 405 1 53318 0 genus species 65555 0 1 Desulfocapsa sulfexigens 405 genus 0 893 4 2 1 161 Desulfobulbus Desulfobulbus sp. ORNL 157 1 1986146 0 species Desulfurivibrio 186 1 2 2 427922 0 genus Desulfurivibrio alkaliphilus 184 1 427923 0 species 0 453227 order 277 Desulfarculales 2 3 1 453228 0 family 275 2 0 453229 genus 275 Desulfarculus 2 4 1 1 271 Desulfarculus baarsii species 0 453230 0 213462 order 771 Syntrophobacterales 4 8 1 213468 0 family Syntrophaceae 547 1 9 5 2357 0 genus 223 1 species 0 2358 1 223 Desulfomonile tiedjei 1 176 genus 0 60892 0 60893 species 176 Desulfobacca acetoxidans 1 43773 0 genus Syntrophus 139 1 2 3 136 Syntrophus aciditrophicus 1 0 316277 species 1 2 2 Syntrophobacteraceae 220 family 213465 0 218 1 29526 0 genus species 0 119484 1 218 Syntrophobacter fumaroxidans order 0 69541 24 50 1 5571 Desulfuromonadales family 0 213421 9 8 1 1615 Desulfuromonadaceae 5 9 1 744 Pelobacter genus 0 18 1 Pelobacter propionicus 222 species 29543 0 1 Pelobacter acetylenicus 193 species 29542 0 1 159 no rank 2620299 0 1 Pelobacter sp. SFB93 159 species 1842532 0 species 0 19 1 161 Pelobacter carbinolicus genus 890 0 1 3 10 Desulfuromonas 863 1 604 Desulfuromonas soudanensis species 0 1603606 no rank 0 2614637 1 249 species 1823759 0 1 Desulfuromonas sp. DDH964 249 1 26 14 Geobacteraceae 3906 family 213422 0 28231 0 genus Geobacter 3654 1 11 46 2 692 no rank 0 2627627 1 Geobacter sp. M18 459 species 443143 0 species 0 443144 1 233 Geobacter sp. M21 Geobacter uraniireducens 1118 1 351604 0 species Geobacter sulfurreducens 168 1 35554 0 species 1 258 Geobacter bemidjiensis species 0 225194 Geobacter lovleyi 204 1 313985 0 species Geobacter metallireducens 509 1 28232 0 species 0 345632 species 249 Geobacter pickeringii 1 252 Geobacter daltonii 1 0 1203471 species 1 158 Geobacter anodireducens species 0 1340425 226 Geoalkalibacter 2 2 1 0 392332 genus species 0 483547 1 224 Geoalkalibacter subterraneus 29 0 order Myxococcales 14454 1 138 37 suborder 80812 0 8 4665 1 3 1 Sandaracinaceae 729 family 1055686 0 2 2 1 728 Sandaracinus genus 0 1055688 1 726 Sandaracinus amylolyticus species 0 927083 0 49 family 3936 Polyangiaceae 5 11 1 Sorangium 3204 1 15 2 39643 0 genus 1 3189 Sorangium cellulosum species 0 56 1 3 2 Chondromyces 721 genus 50 0 718 Chondromyces crocatus 1 0 52 species 25 8324 suborder 80811 0 0 1524213 family 311 Vulgatibacteraceae 2 3 1 genus 0 1524214 1 2 1 309 Vulgatibacter 308 Vulgatibacter incomptus 1 0 1391653 species 1 6 5 Anaeromyxobacteraceae 1393 family 1524215 0 1 4 21 Anaeromyxobacter 1387 genus 161492 0 Anaeromyxobacter dehalogenans 599 1 161493 0 species 2 767 no rank 2620896 0 1 Anaeromyxobacter sp. K 340 species 447217 0 species 0 404589 1 427 Anaeromyxobacter sp. Fw109-5 39 0 family Archangiaceae 3137 1 8 28 2 1 1 456 Melittangium genus 0 44 1 455 Melittangium boletus species 0 83453 genus 42 0 1 8 2 Cystobacter 550 542 Cystobacter fuscus 1 0 43 species 40 0 genus 455 1 species 41 0 1 Stigmatella aurantiaca 455 0 47 genus 1648 Archangium 2 2 1 0 48 species 1646 Archangium gephyra 1 3483 Myxococcaceae 17 9 1 0 31 family genus 0 32 5 36 1 2409 Myxococcus 1 376 Myxococcus xanthus species 0 34 0 33 species 987 Myxococcus fulvus 1 476 Myxococcus stipitatus 1 0 83455 species 534 Myxococcus hansupus 1 0 1297742 species 1057 Corallococcus 3 9 1 0 83461 genus Corallococcus coralloides 612 1 184914 0 species 1 436 Myxococcus macrosporus species 0 35 1327 3 0 224462 suborder Kofleriaceae 1327 1 9 3 224464 0 family Haliangium 1318 1 9 2 162027 0 genus 1 1309 Haliangium ochraceum species 0 80816 class 1807140 0 6 895 25 6 1 895 Acidithiobacillales order 0 225057 0 225058 family 870 Acidithiobacillaceae 5 12 1 119977 0 genus Acidithiobacillus 858 1 4 13 0 160808 species 317 Acidithiobacillus ferrivorans 1 0 33059 species 327 Acidithiobacillus caldus 1 0 920 species 201 Acidithiobacillus ferrooxidans 1 0 1236 class 460705 Gammaproteobacteria 906 793 1 order 0 1692040 4 6 1 840 Acidiferrobacterales 5 4 1 836 Acidiferrobacteraceae family 0 1692041 1 2 14 Sulfurifustis 520 genus 1692042 0 1675686 0 species Sulfurifustis variabilis 506 1 1 15 2 Sulfuricaulis 312 genus 1744881 0 Sulfuricaulis limicola 297 1 1620215 0 species order 0 135619 70 72 1 25526 Oceanospirillales family 224372 0 1 9 16 Alcanivoracaceae 6256 genus 2025617 0 1 2 10 Ketobacter 517 0 1917421 species 507 Ketobacter alkanivorans 1 genus 59753 0 1 6 132 Alcanivorax 5723 species 0 1094342 1 656 Alcanivorax xenomutans 285091 0 species Alcanivorax dieselolei 617 1 1 1870 no rank 0 2638842 1113728 0 species Alcanivorax sp. NBRC 101098 1870 1 Alcanivorax pacificus 508 1 1306787 0 species 1 1940 Alcanivorax borkumensis species 0 59754 33 72 1 9799 Halomonadaceae family 0 28256 Halomonas 5398 1 102 15 2745 0 genus 1 297 Halomonas chromatireducens species 0 507626 213554 0 species Halomonas campaniensis 303 1 species 115561 0 1 Halomonas hydrothermalis 368 1 Halomonas aestuarii 410 species 1897729 0 8 2757 no rank 2609666 0 0 1949203 species 345 Halomonas sp. 'Soap Lake #6' 1 1962264 0 species Halomonas sp. 'Soap Lake #7' 346 1 1 Halomonas sp. R57-5 341 species 1610576 0 0 1971364 species 338 Halomonas sp. GT 1 362 Halomonas sp. 1513 1 0 1883416 species 344 Halomonas sp. KO116 1 0 1504981 species 1 410 Halomonas sp. SF2003 species 0 2136172 0 1118153 species 271 Halomonas sp. GFAJ-1 1 1 529 Halomonas beimenensis species 0 475662 Halomonas huangheensis 632 1 1178482 0 species 3 16 1 739 Kushneria genus 0 504090 species 0 157779 1 274 Kushneria marisflavi 698828 0 species Kushneria konosiri 449 1 0 376488 genus 343 Halotalea 2 7 1 376489 0 species Halotalea alkalilenta 336 1 2 5 1 343 Chromohalobacter genus 0 42054 Chromohalobacter salexigens 338 1 158080 0 species no rank 114403 0 6 2099 2 1 1 600 Candidatus Evansia genus 0 1495768 1 Candidatus Evansia muelleri 599 species 1495769 0 1 2 1 Candidatus Carsonella 345 genus 114185 0 1 344 Candidatus Carsonella ruddii species 0 114186 genus 235572 0 1 18 2 Candidatus Portiera 1154 1136 Candidatus Portiera aleyrodidarum 1 0 91844 species Salinicola 382 1 2 3 404432 0 genus 379 Salinicola tamaricis 1 0 1771309 species Cobetia 423 1 9 2 204286 0 genus 414 Cobetia marina 1 0 28258 species 3 25 1 631 Oleiphilaceae family 0 191033 genus 0 141450 3 2 1 606 Oleiphilus species 0 141451 1 603 Oleiphilus messinensis 0 1920240 family 2368 Kangiellaceae 6 4 1 genus 261963 0 1 5 38 Kangiella 2364 0 1561924 species 507 Kangiella profundi 1 261964 0 species Kangiella koreensis 443 1 1 Kangiella sediminilitoris 499 species 1144748 0 1 877 Kangiella geojedonensis species 0 914150 13 17 1 4687 Oceanospirillaceae family 0 135620 780 Marinobacterium 2 2 1 0 48075 genus species 0 1821621 1 778 Marinobacterium aestuarii 1 5 2 Bacterioplanes 745 genus 1537406 0 species 1249553 0 1 Bacterioplanes sanyensis 740 28253 0 genus Marinomonas 1886 1 4 11 1 Marinomonas mediterranea 574 species 119864 0 936476 0 species Marinomonas posidonica 523 1 0 196814 no rank 778 1 Marinomonas sp. MWYL1 778 1 400668 0 species genus 187492 0 1 2 1 Thalassolituus 566 187493 0 species Thalassolituus oleivorans 565 1 188907 0 genus Oleispira 693 1 2 2 0 188908 species 691 Oleispira antarctica 1 family 0 255527 5 1 1 1200 Saccharospirillaceae 0 230494 genus 615 Reinekea 4 2 1 species 1336806 0 1 Reinekea forsetii 611 1 8 2 Gynuella 584 genus 1445504 0 0 1445505 species 576 Gynuella sunshinyii 1 family 224379 0 2 515 515 Hahella 2 6 1 0 158481 genus Hahella chejuensis 509 1 158327 0 species no rank 118884 0 13 7440 3 2544 clade 32036 0 1 Calyptogena okutanii thioautotrophic gill symbiont 971 species 410330 0 1 696 Bathymodiolus septemdierum thioautotrophic gill symbiont species 0 113267 genus 1541743 0 1 877 0 386487 species 877 Candidatus Ruthia magnifica 1 genus 349742 0 1 2 3 Sedimenticola 503 500 Sedimenticola thiotaurini 1 0 1543721 species 4 2 1 340 Thiolapillus genus 0 1608298 336 Thiolapillus brandeum 1 0 1076588 species 0 1524249 genus 527 Pseudohongiella 3 2 1 1 Pseudohongiella spirulinae 524 species 1249552 0 198346 0 clade 1334 1 186490 0 species Candidatus Baumannia cicadellinicola 1334 1 genus 655184 0 1 43 3 Candidatus Thioglobus 2192 0 1427364 species 1496 Candidatus Thioglobus singularis 1 653 Candidatus Thioglobus autotrophicus 1 0 1705394 species order 1240482 0 1 5 6 Orbales 2013 1240483 0 family Orbaceae 2008 1 5 7 1335631 0 genus Frischella 815 1 4 2 species 1267021 0 1 Frischella perrara 811 1193503 0 genus Gilliamella 1186 1 7 2 0 1196095 species 1179 Gilliamella apicola 1 110858 Enterobacterales 290 251 1 0 91347 order 2 471 no rank 0 451511 genus 0 702 5 2 1 471 Plesiomonas 1 Plesiomonas shigelloides 466 species 703 0 family 0 1903412 15 14 1 8755 Hafniaceae 0 82982 genus 215 Obesumbacterium 4 2 1 211 Obesumbacterium proteus 1 0 82983 species genus 635 0 1 61 8 Edwardsiella 7625 404 Edwardsiella anguillarum 1 0 1821960 species species 93378 0 1 Edwardsiella hoshinae 143 1 5672 Edwardsiella tarda species 0 636 2 835 no rank 0 2676541 0 1578828 species 440 Edwardsiella sp. EA181011 1 species 0 1650654 1 395 Edwardsiella sp. LADL05-105 211 Edwardsiella piscicida 1 0 1263550 species 1 Edwardsiella ictaluri 299 species 67780 0 genus 0 568 3 13 1 900 Hafnia species 0 569 1 646 Hafnia alvei 2621980 0 no rank 241 1 241 Hafnia sp. CBA7124 1 0 1848580 species family 1903410 0 1 20 13 Pectobacteriaceae 5669 44 6 1 2118 Pectobacterium genus 0 122277 2042057 0 species Pectobacterium polaris 204 1 species 0 29471 1 236 Pectobacterium atrosepticum 1 Pectobacterium carotovorum 624 species 554 0 species 0 1905730 1 765 Pectobacterium parmentieri Pectobacterium wasabiae 245 1 55208 0 species 84565 0 genus Sodalis 1527 1 34 5 291 Sodalis praecaptivus 1 0 1239307 species 0 1929246 species 695 Sodalis endosymbiont of Henestaris halophilus 1 0 63612 species 223 Sodalis glossinidius 1 species 1486991 0 1 Candidatus Sodalis pierantonius 284 7 2 1 283 Brenneria genus 0 71655 1109412 0 species Brenneria goodwinii 276 1 1728 Dickeya 6 43 1 0 204037 genus species 0 1089444 1 356 Dickeya solani 1 734 Dickeya zeae species 0 204042 204039 0 species Dickeya dianthicola 215 1 204038 0 species Dickeya dadantii 223 1 species 0 1778540 1 157 Dickeya fangzhongdai 1 2 3 Budviciaceae 294 family 1903416 0 Pragia 292 1 2 5 82984 0 genus Pragia fontium 287 1 82985 0 species 0 1903411 family 18126 Yersiniaceae 39 35 1 genus 0 1745211 2 2 1 211 Chania 1639108 0 species Chania multitudinisentens 209 1 1 13 97 Yersinia 10813 genus 629 0 0 2653513 no rank 306 1 1 Yersinia sp. FDAARGOS_228 306 species 1839800 0 species group 0 1649845 3 6151 0 367190 species 2967 Yersinia similis 1 species 632 0 1 Yersinia pestis 2101 Yersinia pseudotuberculosis 1083 1 633 0 species Yersinia rohdei 301 1 29485 0 species 1 Yersinia kristensenii 288 species 28152 0 Yersinia enterocolitica 1356 1 630 0 species 745 Yersinia frederiksenii 1 0 29484 species 631 0 species Yersinia intermedia 354 1 Yersinia aldovae 485 1 29483 0 species Yersinia aleksiciae 287 1 263819 0 species 0 29486 species 443 Yersinia ruckeri 1 Serratia 6207 1 16 155 613 0 genus 615 0 species Serratia marcescens 1779 1 2647522 0 no rank 2217 8 species 0 768490 1 222 Serratia sp. AS12 species 0 1758196 1 225 Serratia sp. SSNIH1 species 0 1327989 1 243 Serratia sp. FS14 species 0 671990 1 186 Serratia sp. FGI94 species 104623 0 1 Serratia sp. ATCC 39006 232 1 222 Serratia sp. AS13 species 0 768493 1 Serratia sp. MYb239 198 species 2033438 0 0 488142 species 689 Serratia sp. SCBI 1 0 82996 species 566 Serratia plymuthica 1 Serratia proteamaculans 171 1 28151 0 species 1 Serratia rubidaea 236 species 61652 0 185 Serratia ficaria 1 0 61651 species 594 Serratia fonticola 1 0 47917 species 1 304 Serratia liquefaciens species 0 614 1 2 1 Gibbsiella 216 genus 929812 0 0 929813 species 215 Gibbsiella quercinecans 1 genus 1565532 0 1 Rouxiella 4 34037 0 genus Rahnella 640 1 11 4 species 34038 0 1 Rahnella aquatilis 196 2 433 no rank 2635087 0 1805933 0 species Rouxiella sp. ERMR1:05 234 1 741091 0 species Rahnella sp. Y9602 199 1 1903414 0 family Morganellaceae 9679 1 31 22 0 583 genus 2829 Proteus 4 3 1 1 1071 Proteus vulgaris species 0 585 1 1754 Proteus mirabilis species 0 584 genus 0 586 4 7 1 1729 Providencia 716 Providencia stuartii 1 0 588 species 126385 0 species Providencia alcalifaciens 358 1 587 0 species Providencia rettgeri 648 1 366 Morganella 2 2 1 0 581 genus 1 364 Morganella morganii species 0 582 920 Arsenophonus 6 2 1 0 637 genus 634113 0 species Arsenophonus symbiont of Lipoptena fortisetosa 914 1 1487 Photorhabdus 10 4 1 0 29487 genus 0 291112 species 668 Photorhabdus asymbiotica 1 1 Photorhabdus temperata 385 species 574560 0 Photorhabdus luminescens 424 1 29488 0 species 1 6 20 Xenorhabdus 2317 genus 626 0 species 0 40577 1 369 Xenorhabdus poinarii species 0 351671 1 323 Xenorhabdus doucetiae 1 Xenorhabdus hominickii 416 species 351679 0 1 386 Xenorhabdus nematophila species 0 628 species 0 40576 1 803 Xenorhabdus bovienii family 0 543 306 122 1 50798 Enterobacteriaceae 0 413496 genus 1327 Cronobacter 8 45 1 species 28141 0 1 Cronobacter sakazakii 336 1163710 0 species Cronobacter condimenti 192 1 1 155 Cronobacter muytjensii species 0 413501 0 413497 species 161 Cronobacter dublinensis 1 0 535744 species 148 Cronobacter universalis 1 0 413503 species 143 Cronobacter malonaticus 1 147 Cronobacter turicensis 1 0 413502 species 5 13 1 963 Kosakonia genus 0 1330547 1 353 Kosakonia radicincitans species 0 283686 1158459 0 species Kosakonia sacchari 209 1 0 208223 species 144 Kosakonia cowanii 1 species 497725 0 1 Kosakonia oryzae 244 genus 0 409304 1 2 1 734 Candidatus Ishikawaella 733 Candidatus Ishikawaella capsulata 1 0 168169 species 6924 20 191675 0 no rank 0 84563 clade 6924 20 0 146507 clade 1185 4 genus 568987 0 1 2 1 Candidatus Hamiltonella 598 138072 0 species Candidatus Hamiltonella defensa 597 1 secondary endosymbiont of Ctenarytaina eucalypti 188 1 1199245 0 species species 0 134287 1 399 secondary endosymbiont of Heteropsylla cubana 292 1 0 199891 clade 1835721 0 species secondary endosymbiont of Trabutina mannipara 292 1 84564 0 clade 3456 7 0 203804 genus 3456 Candidatus Blochmannia 17 7 1 1 Candidatus Blochmannia vafer 731 species 251535 0 505 Candidatus Blochmannia chromaiodes 1 0 251542 species 1 585 Candidatus Blochmannia floridanus species 0 203907 no rank 0 711328 2 1079 1505597 0 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 619 1 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 460 1 1505596 0 species 1 539 Candidatus Blochmannia pennsylvanicus species 0 101534 genus 1906659 0 1 138 species 1778263 0 1 Candidatus Hoaglandella endobia 138 1 97 genus 0 1906657 species 0 1778262 1 97 Candidatus Doolittlea endobia 0 1906660 genus 400 Candidatus Mikella 1 2 1 0 1778264 species 399 Candidatus Mikella endobia 1 0 1906661 genus 362 Candidatus Gullanella 1 2 1 1 361 Candidatus Gullanella endobia species 0 1070130 1682492 0 genus Candidatus Tachikawaea 994 1 2 5 0 1410383 species 989 Candidatus Tachikawaea gelatinosa 1 no rank 0 36866 5 2031 153 Enterobacteriaceae bacterium ENNIH3 1 0 1920128 species 1920109 0 species Enterobacteriaceae bacterium ENNIH2 169 1 species 891974 0 1 Plautia stali symbiont 1373 Enterobacteriaceae bacterium strain FGI 57 152 1 693444 0 species 0 2066051 species 184 Enterobacteriaceae bacterium ENNIH1 1 0 620 genus 347 Shigella 17 4 1 0 622 species 162 Shigella dysenteriae 1 623 0 species Shigella flexneri 95 1 2629414 0 no rank 73 1 1813821 0 species Shigella sp. PAMC 28760 73 1 Lelliottia 603 1 4 1 1330545 0 genus 1907578 0 species Lelliottia jeotgali 130 1 152 Lelliottia nimipressuralis 1 0 69220 species 1 320 Lelliottia amnigena species 0 61646 genus 1048757 0 1 165 165 Candidatus Moranella endobia 1 0 1048758 species Raoultella 877 1 3 4 160674 0 genus 1 213 Raoultella planticola species 0 575 species 54291 0 1 Raoultella ornithinolytica 660 0 158483 genus 585 Cedecea 3 2 1 0 158822 species 582 Cedecea neteri 1 590 Leclercia 11 4 1 0 83654 genus 2 371 no rank 0 2627398 1920114 0 species Leclercia sp. LSNIH1 189 1 species 0 1920116 1 182 Leclercia sp. LSNIH3 83655 0 species Leclercia adecarboxylata 208 1 0 547 genus 4685 Enterobacter 22 158 1 1202 9 0 2608935 no rank 89 Enterobacter sp. HK169 1 0 1868135 species 1 Enterobacter sp. E20 95 species 1560339 0 1 188 Enterobacter sp. R4-368 species 0 1166130 0 1914861 species 182 Enterobacter sp. SA187 1 species 1977566 0 1 Enterobacter sp. Crenshaw 77 species 2051905 0 1 Enterobacter sp. CRENT-193 128 178 Enterobacter sp. 638 1 0 399742 species 1 Enterobacter sp. FY-07 166 species 1692238 0 99 Enterobacter sp. ODB01 1 0 1827481 species 3325 12 0 354276 species group 0 550 species 1382 Enterobacter cloacae 1 311 3 2757714 0 no rank 1 Enterobacter cloacae complex sp. ECNIH7 91 species 1915310 0 2077137 0 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 109 1 Enterobacter cloacae complex bacterium 111 1 2027919 0 species 104 Enterobacter ludwigii 1 0 299767 species Enterobacter hormaechei 821 1 587 3 158836 0 species 1 99 Enterobacter xiangfangensis subspecies 0 1296536 1812934 0 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 135 1 0 69218 species 109 Enterobacter cancerogenus 1 1 101 Enterobacter cloacae complex 'Hoffmann cluster IV' species 0 1812935 0 61645 species 399 Enterobacter asburiae 1 species 208224 0 1 Enterobacter kobei 98 genus 0 1335483 2 2 1 174 Shimwellia species 563 0 1 Shimwellia blattae 172 genus 0 544 14 94 1 3774 Citrobacter 2095 7 1344959 0 species group 0 67827 species 317 Citrobacter werkmanii 1 1 153 Citrobacter freundii complex sp. CFNIH9 species 0 2077149 1 297 Citrobacter braakii species 0 57706 0 546 species 869 Citrobacter freundii 1 0 2066049 species 142 Citrobacter freundii complex sp. CFNIH2 1 species 0 2077148 1 197 Citrobacter freundii complex sp. CFNIH4 species 2077147 0 1 Citrobacter freundii complex sp. CFNIH3 120 1 169 Citrobacter rodentium species 0 67825 1 443 Citrobacter amalonaticus species 0 35703 0 545 species 183 Citrobacter koseri 1 no rank 2644389 0 2 301 1702170 0 species Citrobacter sp. FDAARGOS_156 153 1 1 Citrobacter sp. CFNIH10 148 species 1920110 0 67824 0 species Citrobacter farmeri 489 1 2 1 1 208 Kluyvera genus 0 579 species 0 61648 1 207 Kluyvera intermedia 0 590 genus 5625 Salmonella 3 13 1 1 542 Salmonella bongori species 0 54736 28901 0 species Salmonella enterica 5070 1 0 1330546 genus 538 Pluralibacter 3 2 1 species 0 61647 1 323 Pluralibacter gergoviae 0 1334193 species 213 [Enterobacter] lignolyticus 1 genus 0 561 23 5 1 9271 Escherichia 415 Escherichia albertii 1 0 208962 species 1 Escherichia fergusonii 124 species 564 0 1499973 0 species Escherichia marmotae 156 1 species 562 0 1 Escherichia coli 8553 0 570 genus 10513 Klebsiella 131 10 1 0 573 species 4845 Klebsiella pneumoniae 1 species 244366 0 1 Klebsiella variicola 444 2 422 no rank 2608929 0 species 1934254 0 1 Klebsiella sp. M5al 221 1 201 Klebsiella sp. LTGPAF-6F species 0 1905288 species 0 548 1 2488 Klebsiella aerogenes Klebsiella quasipneumoniae 250 1 1463165 0 species 1 Klebsiella michiganensis 655 species 1134687 0 1 Klebsiella oxytoca 1093 species 571 0 0 2026240 species 185 Klebsiella quasivariicola 1 6 2 1 558 Candidatus Riesia genus 0 401618 552 Candidatus Riesia pediculicola 1 0 401619 species 0 1903409 family 16776 Erwiniaceae 44 28 1 genus 2100764 0 2 456 1 284 Pantoea calida species 0 665913 665914 0 species Pantoea gaviniae 172 1 genus 53335 0 1 114 11 Pantoea 3418 0 2630326 no rank 715 3 1484157 0 species Pantoea sp. PSNIH2 209 1 311 Pantoea sp. At-9b 1 0 592316 species 1484158 0 species Pantoea sp. PSNIH1 195 1 553 0 species Pantoea ananatis 443 1 Pantoea vagans 557 1 470934 0 species 66269 0 species Pantoea stewartii 281 1 347 1 0 1654067 species group 1 347 Pantoea agglomerans species 0 549 187 Pantoea alhagi 1 0 1891675 species species 0 1235990 1 619 Candidatus Pantoea carbekii Pantoea rwandensis 155 1 1076550 0 species genus 0 32199 16 2 1 9231 Buchnera species 9 0 1 Buchnera aphidicola 9215 51228 0 genus Wigglesworthia 1664 1 20 2 1 Wigglesworthia glossinidia 1644 species 51229 0 genus 0 82986 3 2 1 251 Tatumella 248 Tatumella citrea 1 0 53336 species genus 551 0 1 29 8 Erwinia 1712 0 1619313 species 199 Erwinia gerundensis 1 0 2622719 no rank 202 1 0 215689 species 202 Erwinia sp. Ejp617 1 1 181 Erwinia pyrifoliae species 0 79967 338565 0 species Erwinia tasmaniensis 180 1 182337 0 species Erwinia billingiae 383 1 1 164 Erwinia amylovora species 0 552 Candidatus Erwinia sp. ErCipseudotaxifoliae 374 1 1922217 0 species 1 30 37 Cellvibrionales 9747 order 1706369 0 Halieaceae 1769 1 9 4 1706372 0 family Halioglobus 1760 1 39 3 1217416 0 genus species 0 930805 1 850 Halioglobus japonicus 0 930806 species 871 Halioglobus pacificus 1 family 0 1706375 7 27 1 2213 Spongiibacteraceae Oceanicoccus 1020 1 8 2 1084558 0 genus 1 1012 Oceanicoccus sagamiensis species 0 716816 Zhongshania 559 1 8 2 1434050 0 genus 0 1470434 species 551 Zhongshania aliphaticivorans 1 genus 0 630749 2 8 1 607 Spongiibacter 2631504 0 no rank 599 1 species 0 1620392 1 599 Spongiibacter sp. IMCC21906 13 41 1 4211 Cellvibrionaceae family 0 1706371 614 Teredinibacter 2 5 1 0 2425 genus 0 2426 species 609 Teredinibacter turnerae 1 4 15 1 1489 Cellvibrio genus 0 10 2 1052 no rank 2624793 0 0 1987723 species 563 Cellvibrio sp. PSBB006 1 Cellvibrio sp. PSBB023 489 1 1945512 0 species 1 Cellvibrio japonicus 422 species 155077 0 2 2 1 439 Simiduia genus 0 447467 437 Simiduia agarivorans 1 0 447471 species genus 316625 0 1 7 2 Saccharophagus 625 86304 0 species Saccharophagus degradans 618 1 1 2 2 Agarilytica 1003 genus 2036021 0 Agarilytica rhodophyticola 1001 1 1737490 0 species 1517 Microbulbiferaceae 10 5 1 0 1706373 family 48073 0 genus Microbulbifer 1507 1 4 44 493 Microbulbifer aggregans 1 0 1769779 species species 0 260552 1 444 Microbulbifer agarilyticus 526 Microbulbifer thermotolerans 1 0 252514 species order 135614 0 1 130 54 Xanthomonadales 29229 Xanthomonadaceae 26737 1 228 39 32033 0 family 0 83618 genus 803 Pseudoxanthomonas 3 9 1 0 314722 species 563 Pseudoxanthomonas suwonensis 1 1 Pseudoxanthomonas spadix 231 species 415229 0 genus 68 0 1 23 5 Lysobacter 3691 1 1460 Lysobacter antibioticus species 0 84531 1 Lysobacter gummosus 618 species 262324 0 Lysobacter capsici 1248 1 435897 0 species Lysobacter enzymogenes 342 1 69 0 species 1 1 2 Luteimonas 242 genus 83614 0 species 0 2006110 1 241 Luteimonas sp. 100111 13701 Xanthomonas 17 233 1 0 338 genus species 343 0 1 Xanthomonas translucens 892 2 3377 species group 0 643453 1 2794 Xanthomonas citri species 0 346 1 Xanthomonas fuscans 583 species 366648 0 339 0 species Xanthomonas campestris 2743 1 0 456327 species 440 Xanthomonas euvesicatoria 1 species 0 442694 1 240 Xanthomonas perforans Xanthomonas phaseoli 301 1 1985254 0 species species 48664 0 1 Xanthomonas fragariae 571 1 Xanthomonas sacchari 332 species 56458 0 species 56459 0 1 Xanthomonas vasicola 185 species 0 347 1 2707 Xanthomonas oryzae 1 278 Xanthomonas albilineans species 0 29447 53413 0 species Xanthomonas axonopodis 225 1 species 0 56460 1 556 Xanthomonas vesicatoria 365 Xanthomonas hortorum 1 0 56454 species species 0 366650 1 256 Xanthomonas alfalfae 0 2370 genus 2358 Xylella 1 2 1 2357 Xylella fastidiosa 1 0 2371 species 0 40323 genus 5714 Stenotrophomonas 9 78 1 1 2726 species group 0 995085 species 40324 0 1 Stenotrophomonas maltophilia 2726 1 284 Stenotrophomonas rhizophila species 0 216778 196198 0 no rank 1634 4 0 1793721 species 440 Stenotrophomonas sp. KCTC 12332 1 1 557 Stenotrophomonas sp. MYb57 species 0 1827305 1 Stenotrophomonas sp. LM091 190 species 1904944 0 1 Stenotrophomonas sp. WZN-1 447 species 2005046 0 species 128780 0 1 Stenotrophomonas acidaminiphila 549 species 0 83617 1 443 Stenotrophomonas nitritireducens 1 38 14 Rhodanobacteraceae 2362 family 1775411 0 1 2 3 Frateuria 274 genus 70411 0 Frateuria aurantia 271 1 81475 0 species 824 Dyella 33 4 1 0 231454 genus 241 Dyella thiooxydans 1 0 445710 species 0 231455 species 287 Dyella japonica 1 species 1379159 0 1 Dyella jiangningensis 263 genus 0 2233801 1 234 1 Xanthomonadales bacterium D13 234 species 2021234 0 0 242605 genus 206 Luteibacter 2 6 1 1 Luteibacter rhizovicinus 200 species 242606 0 genus 323413 0 1 2 2 Dokdonella 367 1 Dokdonella koreensis 365 species 323415 0 Rhodanobacter 419 1 6 2 75309 0 genus 1 Rhodanobacter denitrificans 413 species 666685 0 order 135615 0 3 321 3 5 1 321 Cardiobacteriaceae family 0 868 genus 869 0 1 1 2 Dichelobacter 316 species 0 870 1 315 Dichelobacter nodosus 0 118969 order 13314 Legionellales 21 10 1 family 0 444 34 15 1 11541 Legionellaceae 0 465 genus 591 Tatlockia 2 2 1 Tatlockia micdadei 589 1 451 0 species Legionella 10916 1 12 84 445 0 genus 924 Legionella longbeachae 1 0 450 species species 0 449 1 690 Legionella hackeliae 1 780 Legionella waltersii species 0 66969 Legionella lansingensis 573 1 45067 0 species species 29423 0 1 Legionella oakridgensis 572 0 1867846 species 681 Legionella clemsonensis 1 1 Legionella sainthelensi 973 species 28087 0 species 0 446 1 3464 Legionella pneumophila 368 Legionella spiritensis 1 0 452 species 96230 0 species Legionella fallonii 890 1 species 2005262 0 1 Legionella endosymbiont of Polyplax serrata 917 1 5 19 Coxiellaceae 1763 family 118968 0 776 0 genus Coxiella 1172 1 10 3 777 0 species Coxiella burnetii 696 1 2676648 0 no rank 466 1 1 466 Coxiella endosymbiont of Amblyomma americanum species 0 325775 no rank 134284 0 1 572 0 1592897 species 572 Coxiella-like endosymbiont 1 2975 Methylococcales 13 11 1 0 135618 order family 403 0 1 12 30 Methylococcaceae 2964 56 5 1 1678 Methylomonas genus 0 416 species 702114 0 1 Methylomonas koyamae 298 1 317 no rank 2608980 0 0 1727196 species 317 Methylomonas sp. DH-1 1 Methylomonas methanica 286 1 421 0 species 721 Methylomonas denitrificans 1 0 1538553 species 5 2 1 320 Methylovulum genus 0 762296 315 Methylovulum psychrotolerans 1 0 1704499 species genus 39773 0 1 2 1 Methylomicrobium 730 0 271065 species 729 Methylomicrobium alcaliphilum 1 1 4 2 Methylococcus 206 genus 413 0 0 414 species 202 Methylococcus capsulatus 1 825 2 0 33811 no rank 501 gamma proteobacterium HdN1 1 0 83406 species 1 endosymbiont of unidentified scaly snail isolate Monju 324 species 1248727 0 4 2 1 428 Immundisolibacterales order 0 1934945 Immundisolibacteraceae 426 1 3 9 1934946 0 family Immundisolibacter 417 1 16 2 1934947 0 genus 401 Immundisolibacter cernigliae 1 0 1810504 species order 135624 0 1 29 52 Aeromonadales 8085 0 84642 family 8033 Aeromonadaceae 28 60 1 Oceanimonas 319 1 4 2 129577 0 genus 315 1 2636315 0 no rank 0 511062 species 315 Oceanimonas sp. GK1 1 1 3 2 Tolumonas 233 genus 43947 0 43948 0 species Tolumonas auensis 230 1 230 18 1 6258 Aeromonas genus 0 642 241 Aeromonas media 1 0 651 species 0 648 species 132 Aeromonas caviae 1 558964 0 species Aeromonas aquatica 224 1 species 0 654 1 688 Aeromonas veronii 0 196024 species 191 Aeromonas dhakensis 1 1 Aeromonas hydrophila 1344 species 644 0 species 0 652 1 227 Aeromonas schubertii 1799 8 257493 0 no rank 1 299 Aeromonas sp. ASNIH1 species 0 1636606 1 232 Aeromonas sp. CU5 species 0 2033033 Aeromonas sp. ASNIH5 216 1 1758179 0 species 1 Aeromonas sp. CA23 303 species 2033032 0 1 Aeromonas sp. ASNIH3 139 species 1636608 0 species 0 1636609 1 324 Aeromonas sp. ASNIH4 1 Aeromonas sp. ASNIH2 149 species 1636607 0 1 Aeromonas sp. ASNIH7 137 species 1920107 0 0 948519 species 162 Aeromonas rivipollensis 1 Aeromonas salmonicida 1020 1 645 0 species 225143 0 genus Oceanisphaera 750 1 13 3 species 0 1416627 1 331 Oceanisphaera profunda 406 Oceanisphaera sp. AMac2203 1 0 1903694 species Zobellella 413 1 2 15 347533 0 genus 398 Zobellella denitrificans 1 0 347534 species 135622 0 order Alteromonadales 77343 1 105 92 7139 Colwelliaceae 13 9 1 0 267889 family 2 2 1 849 Thalassotalea genus 0 1518149 species 0 1763536 1 847 Thalassotalea crassostreae 0 28228 genus 6277 Colwellia 37 6 1 3551 3 0 196834 no rank species 1816219 0 1 Colwellia sp. PAMC 21821 1301 58049 0 species Colwellia sp. MT41 1245 1 1816218 0 species Colwellia sp. PAMC 20917 1005 1 Colwellia beringensis 1461 1 1967665 0 species Colwellia psychrerythraea 1228 1 28229 0 species 1 5 3 Ferrimonadaceae 272 family 267892 0 1 4 2 Ferrimonas 267 genus 44011 0 species 44012 0 1 Ferrimonas balearica 263 1 4 4 Psychromonadaceae 2058 family 267894 0 genus 0 67572 9 3 1 2054 Psychromonas no rank 2614957 0 1 981 314282 0 species Psychromonas sp. CNPT3 981 1 357794 0 species Psychromonas ingrahamii 1064 1 family 0 267891 20 3 1 971 Moritellaceae 2 10 1 951 Moritella genus 0 58050 80854 0 species Moritella viscosa 941 1 1 48 29 Alteromonadaceae 31833 family 72275 0 genus 0 1621534 8 2 1 1497 Paraglaciecola species 0 326544 1 1489 Paraglaciecola psychrophila 1 2 6 Lacimicrobium 517 genus 1751872 0 1 511 Lacimicrobium alkaliphilum species 0 1526571 genus 261825 0 1 456 1 456 Agarivorans gilvus species 0 680279 genus 0 2742 133 10 1 3615 Marinobacter 1 333 Marinobacter salinus species 0 1874317 1420917 0 species Marinobacter salarius 576 1 0 1420916 species 354 Marinobacter similis 1 3 1073 no rank 83889 0 1671721 0 species Marinobacter sp. CP1 313 1 Marinobacter sp. BSs20148 373 1 490759 0 species 1 Marinobacter sp. LQ44 387 species 1749259 0 Marinobacter hydrocarbonoclasticus 496 1 2743 0 species 1033846 0 species Marinobacter adhaerens 290 1 0 330734 species 360 Marinobacter psychrophilus 1 Glaciecola 1402 1 3 3 89404 0 genus species 0 300231 1 707 Glaciecola nitratireducens 1 692 no rank 2618684 0 species 983545 0 1 Glaciecola sp. 4H-3-7+YE-5 692 91 10 1 24298 Alteromonas genus 0 226 287094 0 species Alteromonas addita 715 1 28108 0 species Alteromonas macleodii 12748 1 no rank 0 2614992 3 5569 species 0 2058133 1 2458 Alteromonas sp. MB-3u-76 1 Alteromonas sp. RW2A1 2444 species 1917158 0 1777491 0 species Alteromonas sp. Mac1 667 1 Alteromonas stellipolaris 873 1 233316 0 species 1 2588 Alteromonas mediterranea species 0 314275 species 0 589873 1 920 Alteromonas australica 794 Alteromonas naphthalenivorans 1 0 715451 species 17 25 1 15875 Shewanellaceae family 0 267890 genus 0 22 24 130 1 15858 Shewanella 6 2173 no rank 196818 0 species 0 94122 1 352 Shewanella sp. ANA-3 1 269 Shewanella sp. MR-4 species 0 60480 Shewanella sp. WE21 342 1 2029986 0 species species 0 60481 1 339 Shewanella sp. MR-7 1 Shewanella sp. W3-18-1 409 species 351745 0 Shewanella sp. Pdp11 462 1 2059264 0 species 292 Shewanella bicestrii 1 0 2018305 species 1 266 Shewanella marisflavi species 0 260364 Shewanella japonica 1128 1 93973 0 species 70863 0 species Shewanella oneidensis 333 1 1 Shewanella psychrophila 1351 species 225848 0 1 1649 Shewanella baltica species 0 62322 species 60217 0 1 Shewanella violacea 1420 0 60961 species 736 Shewanella woodyi 1 species 0 271097 1 629 Shewanella sediminis 56812 0 species Shewanella frigidimarina 807 1 0 192073 species 517 Shewanella denitrificans 1 species 24 0 1 Shewanella putrefaciens 409 1 2703 Shewanella halifaxensis species 0 271098 430 Shewanella piezotolerans 1 0 404011 species 60478 0 species Shewanella amazonensis 253 1 Shewanella pealeana 400 1 70864 0 species 1 Shewanella loihica 232 species 359303 0 0 267893 family 1211 Idiomarinaceae 2 6 1 1209 Idiomarina 5 15 1 0 135575 genus species 135577 0 1 Idiomarina loihiensis 321 Idiomarina piscisalsi 320 1 1096243 0 species 2 553 no rank 2614829 0 species 2055892 0 1 Idiomarina sp. X4 281 0 2100422 species 272 Idiomarina sp. OT37-5b 1 0 267888 family 17892 Pseudoalteromonadaceae 25 9 1 Pseudoalteromonas 17883 1 292 24 53246 0 genus 1 Pseudoalteromonas piscicida 500 species 43662 0 0 394751 species 722 Pseudoalteromonas arctica 1 166935 0 species Pseudoalteromonas translucida 667 1 1 548 Pseudoalteromonas marina species 0 267375 1 986 Pseudoalteromonas phenolica species 0 161398 1 969 Pseudoalteromonas piratica species 0 1348114 0 43659 species 533 Pseudoalteromonas tetraodonis 1 species 0 28107 1 530 Pseudoalteromonas espejiana 455 Pseudoalteromonas rubra 1 0 43658 species 247523 0 species Pseudoalteromonas aliena 664 1 species 0 152297 1 526 Pseudoalteromonas issachenkonii 0 194690 no rank 4965 5 649 Pseudoalteromonas sp. 13-15 1 0 1761891 species species 0 1720343 1 704 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 Pseudoalteromonas sp. NC201 2315 species 1514074 0 682 Pseudoalteromonas sp. Bsw20308 1 0 283699 species 615 Pseudoalteromonas sp. SM9913 1 0 234831 species Pseudoalteromonas atlantica 1180 1 288 0 species species 176102 0 1 Pseudoalteromonas agarivorans 684 species 0 228 1 604 Pseudoalteromonas haloplanktis Pseudoalteromonas nigrifaciens 687 1 28109 0 species species 0 314281 1 854 Pseudoalteromonas tunicata species 298657 0 1 Pseudoalteromonas spongiae 830 43657 0 species Pseudoalteromonas luteoviolacea 687 1 order 0 1775403 4 1 1 305 Nevskiales 0 568386 family 2 Sinobacteraceae 1 2 302 family 0 2689614 genus 469322 0 1 9 2 Steroidobacter 302 0 465721 species 293 Steroidobacter denitrificans 1 135613 0 order Chromatiales 12107 1 51 71 Ectothiorhodospiraceae 3895 1 18 52 72276 0 family 2 3 1 359 Ectothiorhodospira genus 0 1051 356 1 2684909 0 no rank 1 356 Ectothiorhodospira sp. BSL-9 species 0 1442136 genus 0 1335745 11 3 1 511 Spiribacter species 1335746 0 1 Spiribacter salinus 263 1335757 0 species Spiribacter curvatus 237 1 277 Halorhodospira 9 2 1 0 85108 genus 1053 0 species Halorhodospira halophila 268 1 genus 1765964 0 1 1 2 Acidihalobacter 465 160660 0 species Acidihalobacter prosperus 464 1 106633 0 genus Thioalkalivibrio 1913 1 69 6 260 Thioalkalivibrio versutus 1 0 106634 species no rank 2621013 0 1 300 0 396595 species 300 Thioalkalivibrio sp. K90mix 1 1033854 0 species Thioalkalivibrio sulfidiphilus 625 1 294 Thioalkalivibrio nitratireducens 1 0 186931 species 365 Thioalkalivibrio paradoxus 1 0 108010 species 0 133193 genus 318 Alkalilimnicola 2 3 1 Alkalilimnicola ehrlichii 315 1 351052 0 species family 1046 0 1 18 39 Chromatiaceae 5687 Allochromatium 311 1 2 2 85072 0 genus 1 Allochromatium vinosum 309 species 1049 0 genus 53392 0 1 2 22 Thiodictyon 1729 Candidatus Thiodictyon syntrophicum 1707 1 1166950 0 species no rank 0 82569 1 417 0 1978339 species 417 Chromatiaceae bacterium 2141T.STBD.0c.01a 1 1498 Nitrosococcus 18 4 1 0 1227 genus Nitrosococcus halophilus 291 1 133539 0 species 1 Nitrosococcus watsonii 894 species 473531 0 0 1229 species 295 Nitrosococcus oceani 1 Marichromatium 420 1 11 2 85076 0 genus species 0 37487 1 409 Marichromatium purpuratum genus 0 1980513 3 2 1 585 Candidatus Nitrosoglobus 1 582 Candidatus Nitrosoglobus terrae species 0 1630141 1 2 6 Thioflavicoccus 333 genus 156885 0 species 80679 0 1 Thioflavicoccus mobilis 327 genus 13724 0 1 2 9 Thiocystis 355 346 Thiocystis violascens 1 0 73141 species 1676141 0 family Wenzhouxiangellaceae 387 1 3 4 genus 0 1676142 5 2 1 383 Wenzhouxiangella 1 378 Wenzhouxiangella marina species 0 1579979 0 449719 family 785 Granulosicoccaceae 4 3 1 0 437504 genus 781 Granulosicoccus 2 21 1 species 0 437505 1 760 Granulosicoccus antarcticus 255526 0 family 457 3 genus 0 109262 22 3 1 457 Halothiobacillus no rank 0 2636392 1 229 1 229 Halothiobacillus sp. LS2 species 0 1860122 Halothiobacillus neapolitanus 206 1 927 0 species no rank 451214 0 2 388 388 Thiohalobacter 13 2 1 0 1273155 genus 0 585455 species 375 Thiohalobacter thiocyanaticus 1 0 1738654 family 437 Woeseiaceae 1 3 1 436 Woeseia 5 2 1 0 1738655 genus species 1548547 0 1 Woeseia oceani 431 order 0 72274 129 214 1 71875 Pseudomonadales 43437 Pseudomonadaceae 239 86 1 0 135621 family genus 0 1849530 2 2 1 490 Oblitimonas 1697053 0 species Oblitimonas alkaliphila 488 1 genus 286 0 1 80 1011 Pseudomonas 41676 species group 0 136846 2 2479 0 74829 species 278 Pseudomonas balearica 1 2201 1 578833 0 species subgroup 1 Pseudomonas stutzeri 2201 species 316 0 species 0 237610 1 373 Pseudomonas psychrotolerans Pseudomonas versuta 222 1 1788301 0 species species 0 930166 1 495 Pseudomonas brassicacearum 1 129 Pseudomonas lurida species 0 244566 Pseudomonas entomophila 203 1 312306 0 species 1 302 Pseudomonas knackmussii species 0 65741 species 0 104087 1 619 Pseudomonas frederiksbergensis species 1583341 0 1 Pseudomonas cerasi 464 136845 0 species group 5827 6 0 70775 species 218 Pseudomonas plecoglossicida 1 1 416 Pseudomonas fulva species 0 47880 275 Pseudomonas oryzihabitans 1 0 47885 species Pseudomonas putida 3296 1 303 0 species 1 899 Pseudomonas mosselii species 0 78327 species 76759 0 1 Pseudomonas monteilii 723 species 0 219572 1 186 Pseudomonas antarctica 250 Pseudomonas rhizosphaerae 1 0 216142 species 0 157782 species 443 Pseudomonas parafulva 1 2 1822 species group 136842 0 species 0 296 1 396 Pseudomonas fragi 1 Pseudomonas chlororaphis 1426 species 587753 0 species 237609 0 1 Pseudomonas alkylphenolica 223 4380 8 0 136849 species group species 0 33069 1 210 Pseudomonas viridiflava 0 46257 species 197 Pseudomonas avellanae 1 species 0 36746 1 196 Pseudomonas cichorii 1 255 no rank 0 2775504 Pseudomonas sp. Lz4W 255 1 1206777 0 species 0 251695 species subgroup 2085 1 2085 Pseudomonas syringae 1 0 317 species 786 2 251698 0 species subgroup 47877 0 species Pseudomonas amygdali 352 1 species 0 29438 1 434 Pseudomonas savastanoi Pseudomonas syringae group genomosp. 3 651 1 251701 0 species Pseudomonas alcaliphila 257 1 101564 0 species 425 Pseudomonas silesiensis 1 0 1853130 species 1 Pseudomonas koreensis 496 species 198620 0 30 8061 no rank 0 196821 1 Pseudomonas sp. JY-Q 213 species 1338689 0 0 1931241 species 385 Pseudomonas sp. S-6-2 1 0 1898684 species 298 Pseudomonas sp. LPH1 1 1 507 Pseudomonas sp. CC6-YY-74 species 0 1930532 1 209 Pseudomonas sp. LH1G9 species 0 2083055 1856685 0 species Pseudomonas sp. TCU-HL1 295 1 Pseudomonas sp. SWI36 236 1 2083052 0 species 1 250 Pseudomonas sp. HLS-6 species 0 2049589 Pseudomonas sp. FDAARGOS_380 153 1 2018067 0 species species 0 1636610 1 236 Pseudomonas sp. PONIH3 Pseudomonas sp. FGI182 187 1 1259844 0 species 184 Pseudomonas sp. VLB120 1 0 69328 species species 0 1981174 1 350 Pseudomonas sp. M30-35 0 1028989 species 289 Pseudomonas sp. StFLB209 1 0 1500687 species 205 Pseudomonas sp. St29 1 Pseudomonas sp. SWI44 204 1 2083053 0 species 0 2069256 species 214 Pseudomonas sp. XWY-1 1 1 268 Pseudomonas sp. MRSN12121 species 0 1611770 1 601 Pseudomonas sp. TKP species 0 1415630 428 Pseudomonas sp. URMO17WK12:I11 1 0 1283291 species species 1659194 0 1 Pseudomonas sp. GR 6-02 286 species 1294143 0 1 Pseudomonas sp. ATCC 13867 287 1500686 0 species Pseudomonas sp. Os17 248 1 1534110 0 species Pseudomonas sp. DR 5-09 244 1 0 2083051 species 233 Pseudomonas sp. SWI6 1 Pseudomonas sp. CCOS 191 220 1 1649877 0 species 1207075 0 species Pseudomonas sp. UW4 230 1 1 152 Pseudomonas sp. MYb193 species 0 1827300 1 214 Pseudomonas sp. LG1D9 species 0 2083054 0 2067572 species 235 Pseudomonas sp. NC02 1 species group 136841 0 6 5037 species 53408 0 1 Pseudomonas citronellolis 541 species 0 53412 1 325 Pseudomonas resinovorans species subgroup 0 1232139 1 485 1 Pseudomonas furukawaii 485 species 1149133 0 species 300 0 1 Pseudomonas mendocina 1047 species 287 0 1 Pseudomonas aeruginosa 2356 1 Pseudomonas alcaligenes 283 species 43263 0 9 7747 species group 0 136843 Pseudomonas corrugata 204 1 47879 0 species 197 Pseudomonas veronii 1 0 76761 species 1 154 Pseudomonas poae species 0 200451 195 Pseudomonas orientalis 1 0 76758 species 47878 0 species Pseudomonas azotoformans 998 1 species 200450 0 1 Pseudomonas trivialis 996 1 4391 Pseudomonas fluorescens species 0 294 0 380021 species 389 Pseudomonas protegens 1 0 75612 species 223 Pseudomonas mandelii 1 225 Pseudomonas cremoricolorata 1 0 157783 species 1032 3 0 351 subfamily 1 10 3 Azotobacter 1032 genus 352 0 species 0 353 1 718 Azotobacter chroococcum 1 Azotobacter vinelandii 304 species 354 0 42 53 1 28224 Moraxellaceae family 0 468 0 475 genus 2338 Moraxella 5 9 1 1 689 Moraxella catarrhalis species 0 480 Moraxella osloensis 918 1 34062 0 species Moraxella ovis 227 1 29433 0 species 1 495 Moraxella bovoculi species 0 386891 104 11 1 5062 Psychrobacter genus 0 497 species 330922 0 1 Psychrobacter cryohalolentis 400 334543 0 species Psychrobacter arcticus 386 1 0 196806 no rank 2891 6 1028416 0 species Psychrobacter sp. DAB_AL43B 534 1 species 0 1699622 1 409 Psychrobacter sp. P2G3 419 Psychrobacter sp. P11G5 1 0 1699624 species 1 Psychrobacter sp. G 376 species 571800 0 1 778 Psychrobacter sp. PRwf-1 species 0 349106 Psychrobacter sp. AntiMn-1 375 1 1720344 0 species species 45610 0 1 Psychrobacter urativorans 555 1 Psychrobacter alimentarius 726 species 261164 0 228 25 1 20771 Acinetobacter genus 0 469 1 Acinetobacter larvae 508 species 1789224 0 202950 0 species 594 1 1 Acinetobacter sp. ADP1 594 strain 62977 0 196816 0 no rank 3484 7 1407071 0 species Acinetobacter sp. TGL-Y2 511 1 552 Acinetobacter sp. TTH0-4 1 0 1646498 species 0 2079596 species 455 Acinetobacter sp. SWBY1 1 0 1808001 species 386 Acinetobacter sp. LoGeW2-3 1 species 1758189 0 1 Acinetobacter sp. ACNIH2 527 1 636 Acinetobacter sp. ACNIH1 species 0 1636603 1 417 Acinetobacter sp. NCu2D-2 species 0 1608473 1 422 Acinetobacter johnsonii species 0 40214 Acinetobacter radioresistens 521 1 40216 0 species 108981 0 species Acinetobacter schindleri 573 1 5 9666 species group 909768 0 species 471 0 1 Acinetobacter calcoaceticus 1298 1 1125 Acinetobacter nosocomialis species 0 106654 470 0 species Acinetobacter baumannii 3401 1 species 48296 0 1 Acinetobacter pittii 3228 1 614 Acinetobacter lactucae species 0 1785128 29430 0 species Acinetobacter haemolyticus 735 1 1 324 Acinetobacter indicus species 0 756892 Acinetobacter bereziniae 682 1 106648 0 species 1 Acinetobacter equi 978 species 1324350 0 1 Acinetobacter junii 776 species 40215 0 1 Acinetobacter soli 528 species 487316 0 1148157 0 species Acinetobacter oleivorans 752 1 order 135625 0 1 9 33 Pasteurellales 12898 family 712 0 1 73 32 Pasteurellaceae 12889 genus 2094023 0 1 1 2 Glaesserella 673 1 672 Glaesserella parasuis species 0 738 1 2 6 Histophilus 674 genus 214906 0 Histophilus somni 668 1 731 0 species Actinobacillus 1093 1 11 5 713 0 genus 0 718 species 280 Actinobacillus equuli 1 284 Actinobacillus suis 1 0 716 species 1 Actinobacillus succinogenes 180 species 67854 0 715 0 species Actinobacillus pleuropneumoniae 338 1 genus 0 697331 6 2 1 199 Basfia 0 157673 species 193 [Mannheimia] succiniciproducens 1 1 6 20 Haemophilus 4998 genus 724 0 727 0 species Haemophilus influenzae 2696 1 0 729 species 336 Haemophilus parainfluenzae 1 1 393 no rank 0 2609962 1 393 Haemophilus sp. oral taxon 036 species 0 712310 1 1291 [Haemophilus] ducreyi species 0 730 249188 0 species Haemophilus pittmaniae 262 1 Gallibacterium 384 1 2 2 155493 0 genus 0 750 species 382 Gallibacterium anatis 1 416916 0 genus Aggregatibacter 913 1 6 3 732 0 species Aggregatibacter aphrophilus 388 1 0 714 species 519 Aggregatibacter actinomycetemcomitans 1 genus 0 75984 4 13 1 1172 Mannheimia species 85404 0 1 Mannheimia varigena 433 species 0 75985 1 419 Mannheimia haemolytica 1 307 no rank 0 2645054 species 0 1432056 1 307 Mannheimia sp. USDA-ARS-USMARC-1261 3 19 1 2212 Pasteurella genus 0 745 species 747 0 1 Pasteurella multocida 1628 565 Pasteurella dagmatis 1 0 754 species 0 476528 genus 498 Bibersteinia 1 2 1 0 47735 species 497 Bibersteinia trehalosi 1 72273 0 order Thiotrichales 29034 1 14 35 6091 Piscirickettsiaceae 31 14 1 0 135616 family 40222 0 genus Methylophaga 1044 1 3 14 species 754477 0 1 Methylophaga frappieri 481 Methylophaga nitratireducenticrescens 549 1 754476 0 species Piscirickettsia 1208 1 6 2 1237 0 genus 1238 0 species Piscirickettsia salmonis 1202 1 28884 0 genus 443 1 39765 0 species Hydrogenovibrio crunogenus 443 1 genus 34067 0 1 4 46 Cycloclasticus 2627 1631 2 0 2621467 no rank species 0 385025 1 801 Cycloclasticus sp. P1 1 830 Cycloclasticus sp. PY97N species 0 728003 0 1329899 species 950 Cycloclasticus zancles 1 1 6 3 Thiomicrospira 738 genus 933 0 Thiomicrospira cyclica 340 1 147268 0 species 0 92245 species 392 Thiomicrospira aerophila 1 135617 0 family Thiotrichaceae 2082 1 5 17 0 1021 genus 932 Beggiatoa 2 2 1 930 Beggiatoa leptomitoformis 1 0 288004 species Thioploca 1133 1 2 10 40751 0 genus species 0 40754 1 1123 Thioploca ingrica 1 26 15 Francisellaceae 20847 family 34064 0 0 1869285 genus 941 Allofrancisella 2 2 1 1 939 Allofrancisella guangzhouensis species 0 594679 Francisella 19880 1 166 12 262 0 genus Francisella hispaniensis 909 1 622488 0 species 3056 Francisella tularensis 1 0 263 species species 954 0 1 Francisella persica 785 1537 Francisella noatunensis 1 0 657445 species no rank 0 2610885 2 1888 species 0 475375 1 821 Francisella sp. MA067296 1 Francisella sp. FSC1006 1067 species 1547445 0 0 1542390 species 1301 Francisella sp. CA97-1460 1 0 573569 species 876 Francisella sp. TX077308 1 1 Francisella halioticida 5323 species 549298 0 1775 Francisella sp. TX077310 1 0 573570 species 2264 Francisella philomiragia 1 0 28110 species 31 44 1 44749 Vibrionales order 0 135623 family 641 0 1 43 112 Vibrionaceae 44718 1 4 9 Photobacterium 10974 genus 657 0 species 38293 0 1 Photobacterium damselae 9864 species 0 1295392 1 326 Photobacterium gaetbulicola species 74109 0 1 Photobacterium profundum 775 246861 0 genus Grimontia 342 1 2 2 species 673 0 1 Grimontia hollisae 340 4 11 1 3035 Aliivibrio genus 0 511678 species 40269 0 1 Aliivibrio salmonicida 607 1 1484 Aliivibrio wodanis species 0 80852 species 0 668 1 933 Aliivibrio fischeri 391 30 1 28133 Vibrio genus 0 662 0 212663 species 597 Vibrio tasmaniensis 1 1 Vibrio cholerae 791 species 666 0 species 0 45658 1 1081 Vibrio scophthalmi 0 29494 species 748 Vibrio furnissii 1 12584 10 717610 0 species group 1 873 Vibrio natriegens species 0 691 Vibrio rotiferianus 1682 1 190895 0 species species 0 669 1 1430 Vibrio harveyi species 670 0 1 Vibrio parahaemolyticus 1859 2 1134 species subgroup 0 2315253 50719 0 species Vibrio diabolicus 785 1 1 Vibrio antiquarius 349 species 150340 0 766224 0 species Vibrio jasicida 366 1 0 696485 species 865 Vibrio owensii 1 Vibrio campbellii 2821 1 680 0 species 663 0 species Vibrio alginolyticus 1554 1 1435069 0 species Vibrio tritonius 501 1 species 553239 0 1 Vibrio breoganii 555 1 575 Vibrio hyugaensis species 0 1534743 687 0 species Vibrio gazogenes 636 1 1 892 Vibrio nigripulchritudo species 0 28173 0 674 species 553 Vibrio mimicus 1 species 2025808 0 1 Vibrio qinghaiensis 429 52443 0 species Vibrio tapetis 1156 1 1 Vibrio anguillarum 1025 species 55601 0 1 Vibrio fluvialis 413 species 676 0 678 2 0 2614977 no rank 251 Vibrio sp. 2521-89 1 0 2014742 species Vibrio sp. EJY3 427 1 1116375 0 species 0 672 species 2593 Vibrio vulnificus 1 1 730 species group 1891919 0 730 Vibrio tubiashii 1 0 29498 species species 190893 0 1 Vibrio coralliilyticus 1205 genus 0 2042066 2 12 1 2122 Paraphotobacterium 0 1755811 species 2110 Paraphotobacterium marinum 1 1120 6 68297 0 phylum class 203486 0 1 3 6 Dictyoglomia 1120 order 0 203487 5 4 1 1117 Dictyoglomales 1 4 5 Dictyoglomaceae 1113 family 203488 0 genus 13 0 1 3 4 Dictyoglomus 1108 1 Dictyoglomus turgidum 555 species 513050 0 14 0 species Dictyoglomus thermophilum 549 1 508 3 0 1930617 phylum 3 508 class 0 1962850 1 4 3 Calditrichales 508 order 1962852 0 504 2 1962854 0 family 187144 0 genus Caldithrix 504 1 2 1 1 Caldithrix abyssi 503 species 187145 0 202 3 0 2138240 phylum 0 2138243 class 202 3 1 1 3 Coprothermobacterales 202 order 2138246 0 2 201 family 2138247 0 genus 0 68335 2 5 1 201 Coprothermobacter species 0 35786 1 196 Coprothermobacter proteolyticus 5 195 phylum 0 200938 1 5 1 Chrysiogenetes 195 class 118001 0 1 4 1 194 Chrysiogenales order 0 189769 family 189770 0 1 3 1 Chrysiogenaceae 193 Desulfurispirillum 192 1 2 1 393029 0 genus 0 936456 species 191 Desulfurispirillum indicum 1 clade 1783257 0 90 15402 3 239 phylum 0 256845 4 3 1 239 Lentisphaeria class 0 1313211 order 278082 0 1 1 2 Victivallales 235 no rank 0 1674876 1 234 1 Victivallales bacterium CCUG 44730 234 species 2094242 0 36 2 1 6836 Planctomycetes phylum 0 203682 1 2 7 Phycisphaerae 831 class 666505 0 2483366 0 order 294 2 2483367 0 family 294 2 294 2 0 2483368 genus species 0 1940790 1 141 Phycisphaerae bacterium L21-RPul-D3 Phycisphaerae bacterium ST-PulAB-D4 153 1 1941349 0 species 4 10 1 535 Phycisphaerales order 0 666506 0 666507 family 525 Phycisphaeraceae 3 1 1 524 Phycisphaera 2 1 1 0 666508 genus species 0 547188 1 523 Phycisphaera mikurensis 14 25 1 3741 Planctomycetia class 0 203683 order 0 2691354 4 766 2691357 0 family 618 3 301 1 123 0 genus 125 0 species Pirellula staleyi 301 1 Rhodopirellula 317 1 2 7 265488 0 genus species 265606 0 1 Rhodopirellula baltica 310 family 0 2691358 1 148 148 1 0 1676125 genus 1 Thermogutta terrifontis 148 species 1331910 0 0 2691356 order 1017 6 1763524 0 family Isosphaeraceae 1017 1 12 6 genus 0 1763521 1 359 0 1387353 species 359 Paludisphaera borealis 1 Isosphaera 301 1 11 2 127 0 genus Isosphaera pallida 290 1 128 0 species genus 0 466152 9 2 1 345 Singulisphaera species 466153 0 1 Singulisphaera acidiphila 336 order 112 0 1 11 72 Planctomycetales 1565 126 0 family Planctomycetaceae 1493 1 10 21 Rubinisphaera 229 1 2 7 1649490 0 genus species 0 119 1 222 Rubinisphaera brasiliensis Fuerstia 358 1 4 2 1936111 0 genus species 1891926 0 1 Fuerstia marisgermanicae 354 Planctopirus 176 1 1 2 1649480 0 genus 0 120 species 175 Planctopirus limnophila 1 genus 0 118 15 3 1 709 Planctomyces 2 694 no rank 0 2648843 1 298 Planctomyces sp. SH-PL14 species 0 1632864 0 1636152 species 396 Planctomyces sp. SH-PL62 1 0 2691355 order 379 3 379 Gemmataceae 3 2 1 0 1914233 family 24 2 1 377 Gemmata genus 0 113 0 2622970 no rank 353 1 Gemmata sp. SH-PL17 353 1 1630693 0 species 3 2262 class 0 2517206 order 1127829 0 1 3 3 Candidatus Brocadiales 2262 family 0 1127830 2 2259 2259 Candidatus Kuenenia 2 4 1 0 380738 genus Candidatus Kuenenia stuttgartiensis 2255 1 174633 0 species 0 134625 phylum 465 3 465 3 0 1921781 class 465 3 0 1921782 order Kiritimatiellaceae 465 1 2 3 1921783 0 family 0 1921784 genus 463 Kiritimatiella 2 2 1 1 461 Kiritimatiella glycovorans species 0 1307763 3315 20 0 204428 phylum 3315 Chlamydiia 12 20 1 0 204429 class order 51291 0 1 14 7 Chlamydiales 2317 Chlamydiaceae 2310 1 13 4 809 0 family no rank 0 1113537 12 2306 Chlamydia 2306 1 18 12 810 0 genus 198 Chlamydia gallinacea 1 0 1457153 species 1 Chlamydia abortus 189 species 83555 0 83556 0 species Chlamydia felis 214 1 249 Chlamydia pecorum 1 0 85991 species 1 160 Chlamydia caviae species 0 83557 154 Chlamydia muridarum 1 0 83560 species species 83559 0 1 Chlamydia suis 118 83554 0 species Chlamydia psittaci 298 1 0 83558 species 290 Chlamydia pneumoniae 1 197 Chlamydia trachomatis 1 0 813 species Chlamydia avium 221 1 1457141 0 species order 0 1963360 5 986 600 3 92713 0 family genus 0 282132 2 2 1 254 Candidatus Protochlamydia 389348 0 species Candidatus Protochlamydia naegleriophila 252 1 346 1 0 83551 genus 1 346 Parachlamydia acanthamoebae species 0 83552 1 175 family 0 92714 175 1 0 71666 genus Waddlia chondrophila 175 1 71667 0 species 1 211 family 0 92712 1 211 genus 0 34093 0 83561 species 211 Simkania negevensis 1 0 74201 phylum 4547 Verrucomicrobia 1 28 1 113 2 0 134549 class 2 4 1 113 Candidatus Xiphinematobacter genus 0 134550 2648876 0 no rank 109 1 species 1704307 0 1 Candidatus Xiphinematobacter sp. Idaho Grape 109 417295 0 no rank 670 2 0 2026799 species 353 Verrucomicrobia bacterium 1 0 1637999 species 317 Verrucomicrobia bacterium IMCC26134 1 2763 Opitutae 12 11 1 0 414999 class 1 4 3 Puniceicoccales 1451 order 415001 0 Puniceicoccaceae 1448 1 3 7 415002 0 family 1 4 2 Coraliomargarita 1441 genus 442430 0 1437 Coraliomargarita akajimensis 1 0 395922 species Opitutales 1300 1 6 2 415000 0 order Opitutaceae 1298 1 5 4 134623 0 family 1 2 1 421 Opitutus genus 0 178440 1 420 Opitutus terrae species 0 107709 1 342 genus 0 1961799 1838286 0 species Lacunisphaera limnophila 342 1 no rank 278955 0 1 531 531 Opitutaceae bacterium TAV5 1 0 794903 species 1 6 1 Methylacidiphilae 564 class 1955630 0 order 0 717963 1 5 1 563 Methylacidiphilales family 0 717964 4 4 1 562 Methylacidiphilaceae 1 3 2 Methylacidiphilum 558 genus 511745 0 species 591154 0 1 Methylacidiphilum fumariolicum 353 1 203 Methylacidiphilum infernorum species 0 511746 203494 0 class Verrucomicrobiae 436 1 6 3 0 48461 order 433 Verrucomicrobiales 5 4 1 0 1647988 family 429 Akkermansiaceae 4 4 1 239934 0 genus Akkermansia 425 1 3 3 species 239935 0 1 Akkermansia muciniphila 231 1 191 Akkermansia glycaniphila species 0 1679444 name 0 0 1 2157 0 superkingdom 46033 272 0 1783275 clade 8154 58 0 51967 phylum 50 1 1 50 genus 0 498845 species 498846 0 1 Candidatus Korarchaeum cryptofilum 50 15 4617 phylum 0 651137 no rank 651142 0 5 541 1593364 0 genus Candidatus Nitrosopelagicus 339 1 2 3 0 1410606 species 336 Candidatus Nitrosopelagicus brevis 1 202 Candidatus Nitrosotenuis 2 3 1 0 1825023 genus 98 Candidatus Nitrosotenuis sp. AQ6f 1 0 1846278 species species 0 1603555 1 102 Candidatus Nitrosotenuis cloacae 0 31932 order 1321 Nitrosopumilales 2 7 1 1 6 1 1319 Nitrosopumilaceae family 0 338190 1 2 2 Candidatus Nitrosomarinus 512 genus 1993653 0 510 Candidatus Nitrosomarinus catalina 1 0 1898749 species Nitrosopumilus 806 1 2 3 338191 0 genus 1 Candidatus Nitrosopumilus sediminis 389 species 1229909 0 species 1580092 0 1 Candidatus Nitrosopumilus adriaticus 415 1643678 0 class 2755 3 0 1968909 order 1930 1 1930 1 1968910 0 family 1930 1 498374 0 genus Candidatus Nitrosocaldus islandicus 1930 1 2045011 0 species 1033996 0 order Nitrososphaerales 825 1 2 6 1 819 family 1033997 0 1 819 genus 0 497726 0 1034015 species 819 Nitrososphaera viennensis 1 3487 42 28889 0 phylum 183924 0 class Thermoprotei 3487 1 42 2 order 2281 0 1 11 1 Sulfolobales 1926 family 0 118883 10 9 1 1925 Sulfolobaceae genus 0 12914 1 209 1 209 Acidianus hospitalis species 0 563177 2 182 genus 0 41980 species 0 43687 1 74 Metallosphaera sedula Metallosphaera cuprina 108 1 1006005 0 species 0 69655 genus 341 1 111955 0 species Sulfolobus tokodaii 341 1 genus 0 2284 4 8 1 885 Sulfolobus 2285 0 species Sulfolobus acidocaldarius 129 1 1 260 no rank 0 2641160 species 1891280 0 1 Sulfolobus sp. A20 260 species 43080 0 1 Sulfolobus islandicus 488 genus 0 2100760 1 299 1 Sulfolobus solfataricus 299 species 2287 0 871006 0 order 337 3 0 871007 family 28 1 1 28 genus 105850 0 species 0 242703 1 28 Acidilobus saccharovorans 2 309 family 0 255472 200414 0 genus Caldisphaera 309 1 2 1 1 Caldisphaera lagunensis 308 species 200415 0 16 712 order 0 114380 2272 0 family Desulfurococcaceae 550 1 12 1 genus 54258 0 2 62 160233 0 species Ignicoccus hospitalis 22 1 40 Ignicoccus islandicus 1 0 54259 species 9 2 1 55 Thermogladius genus 0 477695 1200300 0 species Thermogladius calderae 46 1 genus 2273 0 1 2 3 Desulfurococcus 103 27 Desulfurococcus mucosus 1 0 2275 species 74 Desulfurococcus amylolyticus 1 0 94694 species 0 54253 genus 25 1 1 25 Thermosphaera aggregans species 0 54254 304 Staphylothermus 3 9 1 0 2279 genus 1 119 Staphylothermus hellenicus species 0 84599 species 0 2280 1 176 Staphylothermus marinus 162 Pyrodictiaceae 4 9 1 0 2307 family 88 1 54247 0 genus 88 Hyperthermus butylicus 1 0 54248 species genus 0 54251 1 41 0 54252 species 41 Pyrolobus fumarii 1 24 1 0 2308 genus 1 Pyrodictium delaneyi 24 species 1273541 0 11 510 order 0 2266 6 329 family 2267 0 70 2 0 2270 genus species 0 184117 1 34 Thermoproteus uzoniensis species 2271 0 1 Thermoproteus tenax 36 131 2 0 164450 genus 1 Vulcanisaeta moutnovskia 88 species 985052 0 species 0 164451 1 43 Vulcanisaeta distributa genus 76886 0 1 89 species 0 76887 1 89 Caldivirga maquilingensis genus 2276 0 1 39 1 Pyrobaculum islandicum 39 species 2277 0 5 181 family 114378 0 5 10 1 181 Thermofilum genus 0 2268 species 1550241 0 1 Thermofilum uzonense 49 1 Thermofilum carboxyditrophus 46 species 1483572 0 1 34 Thermofilum pendens species 0 2269 1365176 0 species Thermofilum adornatus 42 1 37844 Euryarchaeota 213 1 1 0 28890 phylum 106 21559 clade 0 2290931 class 0 224756 5 46 1 8292 Methanomicrobia 1 1 4 Methanocellales 292 order 570264 0 291 3 0 570265 family genus 0 570266 1 3 1 291 Methanocella 1 Methanocella arvoryzae 236 species 1175445 0 1 54 Methanocella conradii species 0 1175444 order 2191 0 1 15 5 Methanomicrobiales 802 245 Methanoregulaceae 4 6 1 0 1198451 family 1 69 genus 475087 0 69 Methanosphaerula palustris 1 0 475088 species 170 2 395331 0 genus 122 Methanoregula boonei 1 0 358766 species 48 Methanoregula formicica 1 0 882104 species family 88404 0 2 100 2192 0 genus Methanocorpusculum 100 1 6 2 94 Methanocorpusculum labreanum 1 0 83984 species 6 6 1 343 Methanomicrobiaceae family 0 2194 genus 0 45989 1 4 1 259 Methanoculleus 76 1 0 2619537 no rank 1 Methanoculleus sp. MAB1 76 species 86622 0 species 0 2198 1 87 Methanoculleus marisnigri 1 Methanoculleus bourgensis 95 species 83986 0 0 230355 genus 78 1 54120 0 species Methanolacinia petrolearia 78 1 family 0 196137 2 109 0 2202 genus 109 Methanospirillum 6 2 1 103 Methanospirillum hungatei 1 0 2203 species order 94695 0 1 16 26 Methanosarcinales 7193 family 143067 0 2 233 233 2 2222 0 genus 1 155 Methanothrix soehngenii species 0 2223 78 Methanosaeta harundinacea 1 0 301375 species family 2206 0 1 23 6 Methanosarcinaceae 6944 0 2321 genus 490 1 490 Methanohalobium evestigatum 1 0 2322 species Methanosarcina 5407 1 3 13 2207 0 genus 0 170861 species 340 Methanosarcina lacustris 1 species 2210 0 1 Methanosarcina thermophila 201 4 1032 no rank 2644672 0 Methanosarcina sp. Kolksee 365 1 1434099 0 species 1 295 Methanosarcina sp. MTP4 species 0 1434100 1434102 0 species Methanosarcina sp. WH1 173 1 1 Methanosarcina sp. WWM596 199 species 1434103 0 38027 0 species Methanosarcina siciliae 941 1 1 Methanosarcina mazei 609 species 2209 0 species 2208 0 1 Methanosarcina barkeri 1364 Methanosarcina acetivorans 253 1 2214 0 species Methanosarcina horonobensis 274 1 418008 0 species 1 Methanosarcina vacuolata 390 species 2215 0 0 2175 genus 290 2 170 Methanohalophilus mahii 1 0 2176 species 2177 0 species Methanohalophilus halophilus 120 1 genus 2225 0 2 353 167 Methanococcoides burtonii 1 0 29291 species 186 Methanococcoides methylutens 1 0 2226 species 1 199 genus 196136 0 39669 0 species Methanosalsum zhilinae 199 1 0 101191 genus 109 Methanomethylovorans 2 6 1 101192 0 species Methanomethylovorans hollandica 103 1 90 1 0 2220 genus 1 90 Methanolobus psychrophilus species 0 420950 0 183963 class 13267 Halobacteria 60 50 1 Haloferacales 5155 1 63 18 1644055 0 order 761 Halorubraceae 3 7 1 0 1963271 family 0 1209988 genus 154 Halopenitus 5 2 1 species 0 1048396 1 149 Halopenitus persicus 1 1 3 Halorubrum 267 genus 56688 0 1 Halorubrum trapanicum 157 species 29284 0 species 2247 0 1 Halorubrum lacusprofundi 109 1 337 genus 0 1644057 1 337 Salinigranum rubrum species 0 755307 234 1 2678336 0 no rank halophilic archaeon DL31 234 1 756883 0 species 1644056 0 family Haloferacaceae 4097 1 14 9 1 3 2 Haloquadratum 3208 genus 293431 0 293091 0 species Haloquadratum walsbyi 3205 1 0 2251 genus 776 Haloferax 4 7 1 1 Haloferax mediterranei 129 species 2252 0 279 Haloferax gibbonsii 1 0 35746 species 1 Haloferax volcanii 361 species 2246 0 60846 0 genus Halogeometricum 99 1 2 2 species 60847 0 1 Halogeometricum borinquense 97 2235 0 order Halobacteriales 1621 1 10 23 0 2236 family 561 Halobacteriaceae 9 3 1 1 2 1 Halanaeroarchaeum 39 genus 1656823 0 38 Halanaeroarchaeum sulfurireducens 1 0 1604004 species 0 1980514 genus 36 1 species 0 1873524 1 36 Halodesulfurarchaeum formicicum 0 2239 genus 369 Halobacterium 6 4 1 1407499 0 species Halobacterium hubeiense 145 1 no rank 0 2668073 1 114 1 Halobacterium sp. DL1 114 species 751944 0 1 Halobacterium salinarum 104 species 2242 0 1 114 genus 332246 0 413810 0 species Halalkalicoccus jeotgali 114 1 family 1963268 0 1 13 3 Haloarculaceae 1050 genus 0 146825 2 132 0 430914 species 64 Halorhabdus tiamatea 1 0 146826 species 68 Halorhabdus utahensis 1 genus 0 63743 1 3 1 260 Natronomonas 113 Natronomonas moolapensis 1 0 416273 species 0 2257 species 146 Natronomonas pharaonis 1 genus 203135 0 1 114 species 0 57705 1 114 Halomicrobium mukohataei 118 1 0 1073987 genus 118 1 2648975 0 no rank 0 1932360 species 118 Halorientalis sp. IM1011 1 genus 0 2237 9 5 1 423 Haloarcula Haloarcula marismortui 120 1 2238 0 species species 51589 0 1 Haloarcula hispanica 95 1 Haloarcula taiwanensis 108 species 1932004 0 0 2624677 no rank 91 1 species 1592728 0 1 Haloarcula sp. CBA1115 91 order 1644060 0 1 18 24 Natrialbales 6441 0 1644061 family 6417 Natrialbaceae 17 14 1 0 2256 genus 154 1 0 44930 species 154 Natronobacterium gregoryi 1 353799 0 genus Halostagnicola 111 1 2 2 1 Halostagnicola larsenii 109 species 353800 0 genus 0 88723 3 3 1 251 Natrinema 1 147 Natrinema pellirubrum species 0 69525 0 2622230 no rank 101 1 1 Natrinema sp. J7-2 101 species 406552 0 1 182 genus 29287 0 182 Natronococcus occultus 1 0 29288 species genus 1269201 0 1 120 1 120 no rank 0 2621923 1333523 0 species Salinarchaeum sp. Harcht-Bsk1 120 1 2 1 1 458 Halobiforma genus 0 203193 1 Halobiforma lacisalsi 457 species 229731 0 231 1 387342 0 genus 1 231 Halopiger xanaduensis species 0 387343 2 2 1 4172 Natrialba genus 0 63742 Natrialba magadii 4170 1 13769 0 species 724 Haloterrigena 3 2 1 0 121871 genus 1 242 Haloterrigena turkmenica species 0 62320 0 588898 species 480 Haloterrigena daqingensis 1 3635 38 0 183968 class 3635 38 0 2258 order 3635 38 2259 0 family 0 2263 genus 3097 Thermococcus 5 29 1 1 19 Thermococcus gorgonarius species 0 71997 265 6 0 2627626 no rank Thermococcus sp. P6 24 1 122420 0 species 22 Thermococcus sp. 4557 1 0 1042877 species Thermococcus sp. 5-4 37 1 2008440 0 species 2016361 0 species Thermococcus sp. EXT12c 32 1 1674923 0 species Thermococcus sp. 2319x1 85 1 65 Thermococcus sp. AM4 1 0 246969 species 1 37 Thermococcus piezophilus species 0 1712654 Thermococcus gammatolerans 76 1 187878 0 species 1 Thermococcus profundus 38 species 49899 0 0 54077 species 36 Thermococcus barossii 1 species 53952 0 1 Thermococcus peptonophilus 39 1 Thermococcus paralvinellae 118 species 582419 0 2264 0 species Thermococcus celer 34 1 species 1505907 0 1 Thermococcus eurythermalis 35 1 Thermococcus pacificus 24 species 71998 0 114 Thermococcus sibiricus 1 0 172049 species 1 Thermococcus radiotolerans 45 species 187880 0 species 54262 0 1 Thermococcus chitonophagus 73 1 25 Thermococcus thioreducens species 0 277988 species 311400 0 1 Thermococcus kodakarensis 43 1 41 Thermococcus nautili species 0 195522 species 72803 0 1 Thermococcus siculi 1694 1 Thermococcus cleftensis 30 species 163003 0 28 Thermococcus onnurineus 1 0 342948 species 43 Thermococcus guaymasensis 1 0 110164 species 175 Thermococcus barophilus 1 0 55802 species 0 2265 species 60 Thermococcus litoralis 1 genus 2260 0 1 1 8 Pyrococcus 475 0 53953 species 72 Pyrococcus horikoshii 1 1 Pyrococcus yayanosii 21 species 1008460 0 1 58 Pyrococcus kukulkanii species 0 1609559 species 29292 0 1 Pyrococcus abyssi 47 2 178 no rank 0 2629106 1 98 Pyrococcus sp. ST04 species 0 1183377 1 Pyrococcus sp. NA2 80 species 342949 0 species 2261 0 1 Pyrococcus furiosus 98 83867 0 genus 63 1 971279 0 species Palaeococcus pacificus 63 1 clade 0 2283794 43 10363 Methanococci 5422 1 18 2 183939 0 class order 2182 0 1 17 1 Methanococcales 5420 0 2183 family 3259 Methanococcaceae 7 4 1 genus 0 2184 1 5 1 2947 Methanococcus species 0 42879 1 345 Methanococcus aeolicus 1 Methanococcus voltae 947 species 2188 0 Methanococcus vannielii 348 1 2187 0 species species 0 39152 1 1306 Methanococcus maripaludis 1 308 genus 0 155862 Methanothermococcus okinawensis 308 1 155863 0 species family 196117 0 1 9 3 Methanocaldococcaceae 2160 1 12 7 Methanocaldococcus 1882 genus 196118 0 1 Methanocaldococcus jannaschii 305 species 2190 0 1 367 no rank 0 2641196 species 0 644281 1 367 Methanocaldococcus sp. FS406-22 Methanocaldococcus infernus 289 1 67760 0 species species 0 1301915 1 312 Methanocaldococcus bathoardescens 1 321 Methanocaldococcus vulcanius species 0 73913 species 0 83171 1 276 Methanocaldococcus fervens 0 196119 genus 275 1 1 Methanotorris igneus 275 species 2189 0 1 25 8 Methanobacteria 4941 class 183925 0 1 24 5 Methanobacteriales 4933 order 2158 0 2178 0 family 322 1 1 322 genus 2179 0 species 2180 0 1 Methanothermus fervidus 322 4606 Methanobacteriaceae 22 1 1 0 2159 family 1 4 5 Methanothermobacter 234 genus 145260 0 0 2631116 no rank 69 1 866790 0 species Methanothermobacter sp. CaT2 69 1 1 Methanothermobacter thermautotrophicus 39 species 145262 0 145263 0 species Methanothermobacter marburgensis 82 1 species 0 145261 1 40 Methanothermobacter wolfeii 7 8 1 1437 Methanobacterium genus 0 2160 Methanobacterium subterraneum 168 1 59277 0 species 1 387 Methanobacterium lacus species 0 877455 Methanobacterium paludis 237 1 868131 0 species 1 178 Methanobacterium formicicum species 0 2162 Methanobacterium congolense 182 1 118062 0 species 278 2 2627676 0 no rank species 0 1379702 1 131 Methanobacterium sp. MB1 species 1911685 0 1 Methanobacterium sp. MZ-A1 147 2316 0 genus 464 1 Methanosphaera stadtmanae 464 1 2317 0 species 0 2172 genus 2470 Methanobrevibacter 5 7 1 493 Methanobrevibacter millerae 1 0 230361 species species 83816 0 1 Methanobrevibacter ruminantium 301 1 Methanobrevibacter smithii 490 species 2173 0 2 619 no rank 0 2638681 1 261 Methanobrevibacter sp. YE315 species 0 1609968 1 358 Methanobrevibacter sp. AbM4 species 0 224719 species 0 294671 1 562 Methanobrevibacter olleyae 0 183980 class 551 7 7 551 order 0 2231 family 0 2232 7 551 2 113 genus 190818 0 565033 0 species Geoglobus acetivorans 63 1 species 113653 0 1 Geoglobus ahangari 50 4 352 genus 0 2233 1 Archaeoglobus profundus 60 species 84156 0 1 77 Archaeoglobus veneficus species 0 58290 species 2234 0 1 Archaeoglobus fulgidus 92 123 Archaeoglobus sulfaticallidus 1 0 1316941 species 1 86 genus 54260 0 86 Ferroglobus placidus 1 0 54261 species 1735 18 2283796 0 clade 1803510 0 clade 211 2 211 2 0 379546 genus 379547 0 species Aciduliprofundum boonei 124 1 87 1 2633939 0 no rank 87 Aciduliprofundum sp. MAR08-339 1 0 673860 species 183967 0 class Thermoplasmata 1524 1 16 3 order 1235850 0 4 524 1577788 0 family Methanomassiliicoccaceae 476 1 3 1 427 1 1080709 0 genus 1406512 0 species Candidatus Methanomassiliicoccus intestinalis 427 1 genus 0 1607807 1 48 0 1577791 species 48 Candidatus Methanoplasma termitum 1 family 0 2517203 1 48 genus 0 1291539 1 48 1 48 Candidatus Methanomethylophilus alvus species 0 1291540 28 1 1234666 0 no rank species 0 1495144 1 28 methanogenic archaeon ISO4-H5 0 2301 order 969 10 family 90142 0 2 369 0 74968 genus 369 2 species 74969 0 1 Ferroplasma acidiphilum 178 species 97393 0 1 Ferroplasma acidarmanus 191 family 1747776 0 1 3 3 Cuniculiplasmataceae 274 genus 1747777 0 1 2 7 Cuniculiplasma 271 species 1673428 0 1 Cuniculiplasma divulgatum 264 0 46659 family 131 3 Thermoplasma 131 1 1 3 2302 0 genus 1 88 Thermoplasma volcanium species 0 50339 2303 0 species Thermoplasma acidophilum 42 1 1 159 family 46630 0 159 1 0 46631 genus 1 159 Picrophilus torridus species 0 82076 0 1919231 no rank 36 1 1 36 Thermoplasmatales archaeon BRNA1 species 0 1054217 35 1 0 1783276 clade 35 1 1801631 0 phylum 2490204 0 genus 35 1 species 0 1920749 1 35 Candidatus Micrarchaeota archaeon Mia14