members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliBradyrhizobium sp. S23321Klebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4Serratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4249 27 10122 1449226 0 0 name 1 0 superkingdom 41913 259 2157 57 1783275 4507 clade 0 51967 1 48 phylum 0 genus 0 48 498845 1 48 498846 1 species 0 Candidatus Korarchaeum cryptofilum 0 phylum 44 28889 1752 1752 1 1 44 183924 0 class Thermoprotei 0 order Sulfolobales 1 2281 11 544 2 family 0 Sulfolobaceae 1 10 118883 542 2 239 2 1 4 2284 genus 0 Sulfolobus no rank 0 51 1 2641160 species 0 Sulfolobus sp. A20 51 1 1891280 147 1 43080 0 species Sulfolobus islandicus Sulfolobus acidocaldarius 0 species 2285 1 39 0 genus 50 12914 1 563177 1 50 species 0 Acidianus hospitalis 91 1 2100760 genus 0 species 0 Sulfolobus solfataricus 91 1 2287 2 41980 74 genus 0 43687 1 22 species 0 Metallosphaera sedula 1 1006005 52 Metallosphaera cuprina 0 species 0 genus 86 1 69655 86 111955 1 Sulfolobus tokodaii species 0 114380 16 1 3 684 Desulfurococcales 0 order 0 family Pyrodictiaceae 1 4 2307 131 2 66 1 54247 genus 0 1 54248 66 species 0 Hyperthermus butylicus 24 2308 1 genus 0 24 1 1273541 0 species Pyrodictium delaneyi 1 54251 39 0 genus 39 54252 1 0 species Pyrolobus fumarii 550 1 1 11 2272 family 0 Desulfurococcaceae 0 genus Staphylothermus 462 2 1 3 2279 Staphylothermus hellenicus 0 species 84599 1 51 Staphylothermus marinus species 0 409 1 2280 genus 0 54258 2 22 Ignicoccus islandicus 0 species 1 54259 16 1 160233 6 0 species Ignicoccus hospitalis genus 0 Thermogladius 1 2 477695 12 2 1 1200300 10 0 species Thermogladius calderae 48 2273 2 genus 0 38 94694 1 species 0 Desulfurococcus amylolyticus 10 1 2275 Desulfurococcus mucosus 0 species 0 genus 1 54253 5 species 0 Thermosphaera aggregans 1 54254 5 Thermoproteales order 0 13 2266 1 3 376 0 family 114378 5 142 2268 5 1 3 142 Thermofilum genus 0 33 1483572 1 Thermofilum carboxyditrophus 0 species Thermofilum uzonense species 0 45 1550241 1 0 species Thermofilum pendens 39 1 2269 0 species Thermofilum adornatus 22 1365176 1 Thermoproteaceae 0 family 2267 7 1 3 231 1 2276 20 genus 0 Pyrobaculum islandicum species 0 2277 1 20 40 76886 1 genus 0 40 76887 1 Caldivirga maquilingensis 0 species genus 0 2 164450 128 60 164451 1 0 species Vulcanisaeta distributa 68 985052 1 Vulcanisaeta moutnovskia species 0 2 2270 40 genus 0 29 1 184117 Thermoproteus uzoniensis 0 species 11 1 2271 0 species Thermoproteus tenax 0 order 147 3 871006 117 255472 1 family 0 genus 0 200414 1 117 species 0 Caldisphaera lagunensis 117 1 200415 30 2 871007 family 0 genus 0 Acidilobus 30 1 1 105850 2 Acidilobus saccharovorans 0 species 29 1 242703 2707 651137 12 0 phylum 140 3 651142 no rank 0 47 1593364 1 genus 0 species 0 Candidatus Nitrosopelagicus brevis 1410606 1 47 genus 0 1825023 2 93 0 species Candidatus Nitrosotenuis sp. AQ6f 41 1 1846278 0 species Candidatus Nitrosotenuis cloacae 1603555 1 52 0 order Nitrosopumilales 224 4 1 4 31932 338190 3 220 family 0 2 338191 128 genus 0 Candidatus Nitrosopumilus sediminis species 0 1229909 1 58 70 1580092 1 Candidatus Nitrosopumilus adriaticus 0 species 92 1 1993653 0 genus 0 species Candidatus Nitrosomarinus catalina 92 1898749 1 2343 3 1 1643678 5 0 class Nitrososphaeria order 0 1373 1968909 2 family 0 1373 2 1968910 498374 2 1 1 1373 Candidatus Nitrosocaldus 0 genus 2045011 1 1372 Candidatus Nitrosocaldus islandicus 0 species 0 order 1033996 2 967 1033997 2 967 family 0 Nitrososphaera genus 0 2 497726 1 1 967 Nitrososphaera viennensis 0 species 966 1 1034015 201 28890 37393 0 phylum 38 183968 10792 class 0 2258 38 10792 order 0 2259 38 10792 family 0 Pyrococcus 0 genus 4 139 2260 8 1 Pyrococcus furiosus species 0 29 2261 1 1 53953 20 Pyrococcus horikoshii 0 species 0 no rank 2629106 2 50 species 0 Pyrococcus sp. ST04 1183377 1 24 0 species Pyrococcus sp. NA2 342949 1 26 0 species Pyrococcus yayanosii 13 1 1008460 Pyrococcus kukulkanii 0 species 10 1609559 1 Pyrococcus abyssi species 0 13 29292 1 genus 0 1 83867 40 0 species Palaeococcus pacificus 1 971279 40 0 genus Thermococcus 1 29 2263 10613 3 1 342948 25 species 0 Thermococcus onnurineus 14 163003 1 Thermococcus cleftensis species 0 species 0 Thermococcus piezophilus 29 1712654 1 Thermococcus guaymasensis species 0 110164 1 22 1 1505907 23 species 0 Thermococcus eurythermalis Thermococcus pacificus 0 species 24 71998 1 Thermococcus kodakarensis 0 species 1 311400 20 195522 1 22 species 0 Thermococcus nautili 0 species Thermococcus chitonophagus 48 54262 1 0 species Thermococcus barossii 20 1 54077 Thermococcus gammatolerans 0 species 187878 1 83 26 2265 1 0 species Thermococcus litoralis 26 1 49899 0 species Thermococcus profundus 1 187880 11 species 0 Thermococcus radiotolerans Thermococcus gorgonarius 0 species 9 1 71997 Thermococcus siculi species 0 9845 72803 1 0 species Thermococcus celer 1 2264 21 1 582419 72 0 species Thermococcus paralvinellae 0 no rank 107 2627626 6 species 0 Thermococcus sp. AM4 14 1 246969 Thermococcus sp. 5-4 species 0 1 2008440 26 1 1674923 32 species 0 Thermococcus sp. 2319x1 13 1042877 1 species 0 Thermococcus sp. 4557 8 122420 1 0 species Thermococcus sp. P6 1 2016361 14 Thermococcus sp. EXT12c species 0 0 species Thermococcus thioreducens 23 1 277988 Thermococcus peptonophilus 0 species 1 53952 17 1 55802 62 Thermococcus barophilus species 0 species 0 Thermococcus sibiricus 172049 1 61 0 class 311 183980 8 2231 8 1 1 311 Archaeoglobales 0 order 310 2232 7 0 family 1 54260 69 genus 0 Ferroglobus placidus 0 species 54261 1 69 0 genus 182 4 2233 2234 1 60 species 0 Archaeoglobus fulgidus species 0 Archaeoglobus sulfaticallidus 60 1 1316941 40 1 58290 Archaeoglobus veneficus 0 species Archaeoglobus profundus species 0 22 1 84156 0 genus 59 2 190818 Geoglobus acetivorans 0 species 1 565033 33 26 113653 1 0 species Geoglobus ahangari 0 clade 15 2283796 1530 1803510 2 230 clade 0 0 genus 379546 2 230 Aciduliprofundum boonei 0 species 107 1 379547 0 no rank 123 1 2633939 0 species Aciduliprofundum sp. MAR08-339 123 673860 1 1300 183967 13 0 class 9 2301 648 order 0 no rank 0 1919231 1 57 57 1 1054217 species 0 Thermoplasmatales archaeon BRNA1 46659 2 43 0 family genus 0 43 2 2302 0 species Thermoplasma acidophilum 1 2303 14 species 0 Thermoplasma volcanium 1 50339 29 0 family 147 2 90142 2 74968 147 0 genus species 0 Ferroplasma acidarmanus 1 97393 81 Ferroplasma acidiphilum 0 species 66 1 74969 Cuniculiplasmataceae family 0 1 353 3 1747776 1 Cuniculiplasma 0 genus 2 1747777 1 76 352 1673428 1 276 species 0 Cuniculiplasma divulgatum family 0 48 1 46630 1 46631 48 0 genus Picrophilus torridus species 0 82076 1 48 553 3 1235850 order 0 484 2 1577788 family 0 1 1080709 470 genus 0 0 species Candidatus Methanomassiliicoccus intestinalis 470 1406512 1 1607807 1 14 0 genus 14 1577791 1 species 0 Candidatus Methanoplasma termitum family 0 69 2517203 1 0 genus 1 1291539 69 0 species Candidatus Methanomethylophilus alvus 1291540 1 69 1234666 1 99 0 no rank 99 1495144 1 0 species methanogenic archaeon ISO4-H5 2668 2283794 37 clade 0 0 class 183939 13 1285 0 order 1285 13 2182 1 851 6 2183 1 Methanococcaceae 0 family 782 4 2184 0 genus 110 1 42879 species 0 Methanococcus aeolicus 1 39152 327 species 0 Methanococcus maripaludis 272 1 2188 Methanococcus voltae 0 species 73 1 2187 Methanococcus vannielii species 0 0 genus 68 1 155862 species 0 Methanothermococcus okinawensis 68 155863 1 family 0 7 196117 434 390 196118 6 0 genus 79 73913 1 Methanocaldococcus vulcanius 0 species no rank 0 1 2641196 87 species 0 Methanocaldococcus sp. FS406-22 1 644281 87 0 species Methanocaldococcus fervens 58 1 83171 2190 1 55 Methanocaldococcus jannaschii 0 species Methanocaldococcus bathoardescens 0 species 57 1301915 1 1 67760 54 Methanocaldococcus infernus 0 species 0 genus 1 196119 44 Methanotorris igneus species 0 1 2189 44 Methanobacteria 0 class 24 183925 1 2 1383 order 0 1381 23 2158 1 22 2159 1335 1 family 0 Methanobacteriaceae 97 1 2316 0 genus 97 1 2317 species 0 Methanosphaera stadtmanae genus 0 Methanobrevibacter 602 3 1 2172 7 Methanobrevibacter millerae species 0 1 230361 96 species 0 Methanobrevibacter olleyae 294671 1 123 0 species Methanobrevibacter ruminantium 99 1 83816 species 0 Methanobrevibacter smithii 116 2173 1 2 2638681 165 no rank 0 0 species Methanobrevibacter sp. AbM4 87 224719 1 78 1 1609968 0 species Methanobrevibacter sp. YE315 0 genus Methanothermobacter 83 3 1 145260 5 2631116 1 22 no rank 0 Methanothermobacter sp. CaT2 0 species 22 866790 1 Methanothermobacter thermautotrophicus species 0 14 1 145262 Methanothermobacter wolfeii 0 species 145261 1 22 1 145263 22 species 0 Methanothermobacter marburgensis 2160 8 1 3 552 Methanobacterium 0 genus 2 2627676 126 0 no rank 1911685 1 55 0 species Methanobacterium sp. MZ-A1 Methanobacterium sp. MB1 species 0 1379702 1 71 74 1 868131 species 0 Methanobacterium paludis 118062 1 62 species 0 Methanobacterium congolense 69 2162 1 Methanobacterium formicicum 0 species 59277 1 52 species 0 Methanobacterium subterraneum 0 species Methanobacterium lacus 877455 1 166 0 family 46 2178 1 46 2179 1 genus 0 Methanothermus fervidus species 0 2180 1 46 clade 0 22092 103 2290931 17897 24 1 57 183963 class 0 Halobacteria 35 9875 1644055 17 1 Haloferacales order 0 family 0 1963271 7 390 2 1209988 1 2 83 Halopenitus genus 0 0 species Halopenitus persicus 1048396 1 81 0 genus Halorubrum 125 3 1 56688 3 74 29284 1 Halorubrum trapanicum 0 species 0 species Halorubrum lacusprofundi 1 2247 48 0 genus Salinigranum 1 2 1644057 182 2 1 755307 180 0 species Salinigranum rubrum 1 1644056 8 9341 29 family 0 Haloferacaceae genus 0 59 1 60846 59 1 60847 species 0 Halogeometricum borinquense 1093 6 1 4 2251 0 genus Haloferax 2246 1 698 Haloferax volcanii species 0 Haloferax gibbonsii species 0 35746 1 320 Haloferax mediterranei 0 species 2252 1 69 Haloquadratum 0 genus 293431 2 1 5 8160 8155 293091 1 0 species Haloquadratum walsbyi no rank 0 1 2678336 109 0 species halophilic archaeon DL31 109 756883 1 1 14 1644060 6998 37 order 0 Natrialbales 0 family Natrialbaceae 6961 12 1 1644061 13 63742 2 1 6 5469 Natrialba genus 0 Natrialba magadii species 0 13769 1 5463 29287 1 82 genus 0 Natronococcus occultus species 0 82 29288 1 243 121871 2 genus 0 115 62320 1 Haloterrigena turkmenica species 0 0 species Haloterrigena daqingensis 588898 1 128 107 353799 1 0 genus species 0 Halostagnicola larsenii 107 1 353800 499 203193 1 genus 0 1 229731 499 Halobiforma lacisalsi species 0 2256 1 153 0 genus Natronobacterium gregoryi species 0 1 44930 153 0 genus 387342 1 180 180 387343 1 Halopiger xanaduensis species 0 0 genus 50 1 1269201 0 no rank 50 1 2621923 50 1333523 1 0 species Salinarchaeum sp. Harcht-Bsk1 0 genus 88723 2 166 species 0 Natrinema pellirubrum 69525 1 118 no rank 0 48 2622230 1 48 406552 1 0 species Natrinema sp. J7-2 order 0 Halobacteriales 1 25 2235 1000 5 1963268 15 1 2 671 Haloarculaceae family 0 1 90 3 146825 1 Halorhabdus genus 0 species 0 Halorhabdus tiamatea 36 1 430914 53 1 146826 Halorhabdus utahensis 0 species 0 genus Haloarcula 1 2237 5 286 5 species 0 Haloarcula hispanica 77 51589 1 1 2238 66 0 species Haloarcula marismortui no rank 0 2624677 1 69 Haloarcula sp. CBA1115 0 species 1 1592728 69 1 1932004 69 Haloarcula taiwanensis 0 species 63743 3 1 6 124 Natronomonas 0 genus 416273 1 55 Natronomonas moolapensis species 0 Natronomonas pharaonis 0 species 1 2257 63 0 genus 1 203135 66 Halomicrobium mukohataei species 0 1 57705 66 Halorientalis 0 genus 1073987 2 1 5 103 98 1 2648975 no rank 0 Halorientalis sp. IM1011 species 0 98 1932360 1 family 0 Halobacteriaceae 324 3 1 2236 9 genus 0 26 1 1980514 species 0 Halodesulfurarchaeum formicicum 1 1873524 26 4 2239 1 11 220 Halobacterium 0 genus no rank 0 2668073 1 90 species 0 Halobacterium sp. DL1 90 1 751944 1 1407499 67 0 species Halobacterium hubeiense Halobacterium salinarum 0 species 52 1 2242 22 1656823 1 0 genus 1 1604004 22 species 0 Halanaeroarchaeum sulfurireducens 0 genus Halalkalicoccus 53 5 1 332246 2 Halalkalicoccus jeotgali 0 species 1 413810 48 Methanomicrobia class 0 1 4195 46 224756 1 Methanocellales order 0 570264 4 1 2 201 570265 3 199 0 family 0 genus Methanocella 199 3 1 570266 3 24 1 1175444 Methanocella conradii 0 species 1 1175445 172 species 0 Methanocella arvoryzae order 0 Methanosarcinales 1 94695 27 3517 8 0 family Methanosarcinaceae 1 2206 24 3283 1 0 genus 96 2 2175 Methanohalophilus halophilus species 0 2177 1 41 2176 1 55 0 species Methanohalophilus mahii 0 genus Methanomethylovorans 31 3 1 101191 2 Methanomethylovorans hollandica 0 species 1 101192 28 196136 1 57 0 genus 39669 1 57 Methanosalsum zhilinae species 0 0 genus Methanococcoides 500 1 1 3 2225 Methanococcoides methylutens species 0 1 2226 414 Methanococcoides burtonii 0 species 85 1 29291 2440 1 1 2207 13 genus 0 Methanosarcina 1 2215 121 Methanosarcina vacuolata species 0 species 0 Methanosarcina horonobensis 1 418008 80 species 0 Methanosarcina thermophila 92 1 2210 1 2209 235 species 0 Methanosarcina mazei 2208 1 617 0 species Methanosarcina barkeri 0 species Methanosarcina lacustris 195 170861 1 725 4 2644672 0 no rank 0 species Methanosarcina sp. Kolksee 109 1434099 1 229 1434103 1 Methanosarcina sp. WWM596 0 species 0 species Methanosarcina sp. WH1 1434102 1 234 species 0 Methanosarcina sp. MTP4 153 1434100 1 0 species Methanosarcina acetivorans 1 2214 100 Methanosarcina siciliae species 0 274 1 38027 0 genus 132 1 2321 Methanohalobium evestigatum species 0 132 2322 1 26 1 2220 genus 0 species 0 Methanolobus psychrophilus 420950 1 26 226 2 143067 family 0 226 2222 2 0 genus 175 1 2223 species 0 Methanothrix soehngenii species 0 Methanosaeta harundinacea 51 301375 1 Methanomicrobiales order 0 14 2191 1 1 476 51 2 88404 family 0 2192 2 1 3 51 Methanocorpusculum genus 0 Methanocorpusculum labreanum species 0 48 1 83984 81 2 196137 0 family 0 genus Methanospirillum 81 3 1 2 2202 species 0 Methanospirillum hungatei 78 1 2203 family 0 Methanoregulaceae 1 4 1198451 178 3 395331 2 127 0 genus 95 358766 1 0 species Methanoregula boonei Methanoregula formicica species 0 32 882104 1 genus 0 48 475087 1 1 475088 48 Methanosphaerula palustris 0 species family 0 Methanomicrobiaceae 1 5 2194 165 3 0 genus 230355 1 39 Methanolacinia petrolearia 0 species 39 1 54120 0 genus 3 45989 123 0 no rank 1 2619537 32 32 86622 1 species 0 Methanoculleus sp. MAB1 36 2198 1 Methanoculleus marisnigri species 0 83986 1 55 species 0 Methanoculleus bourgensis clade 0 1783276 1 13 13 1801631 1 phylum 0 genus 0 2490204 1 13 species 0 Candidatus Micrarchaeota archaeon Mia14 1 1920749 13 Bacteria superkingdom 0 2 3962 1 13 1397191 194 1930617 1 0 phylum 0 class 1 1962850 194 194 1962852 1 order 0 family 0 194 1 1962854 194 1 187144 genus 0 0 species Caldithrix abyssi 187145 1 194 5617 51 203691 phylum 0 Spirochaetia 0 class 14 5617 203692 51 1 875 1643686 5 order 0 0 family 5 143786 875 875 3 1 5 29521 0 genus Brachyspira Brachyspira pilosicoli species 0 52584 1 277 species 0 Brachyspira murdochii 188 1 84378 159 1 233 species 0 Brachyspira hyodysenteriae species 0 Brachyspira intermedia 1 84377 174 Spirochaetales 0 order 12 3681 136 38 1 family 0 Spirochaetaceae 1911 11 1 137 21 Treponema 0 genus 157 12 1 2 1429 2638727 1 66 no rank 0 Treponema sp. OMZ 838 0 species 66 1 1539298 Treponema caldarium species 0 1 215591 89 1 158 81 Treponema denticola species 0 1 221027 117 0 species Treponema putidum 0 species Treponema azotonutricium 45 1 150829 Treponema paraluiscuniculi 0 species 43 1 53435 species 0 Treponema pedis 87 1 409322 167 1 88 0 species Treponema succinifaciens 128 88058 1 0 species Treponema primitia 652 1 81028 species 0 Treponema brennaborense 31 1 160 Treponema pallidum species 0 0 genus Sphaerochaeta 1 399320 4 119 1 0 species Sphaerochaeta coccoides 42 1 273376 43 1131703 1 0 species Sphaerochaeta globosa Sphaerochaeta pleomorpha 0 species 33 1131707 1 0 genus 156 2 146 96 154 1 Spirochaeta thermophila species 0 Spirochaeta africana species 0 60 1 46355 51 1911556 1 genus 0 51 55206 1 0 species Sediminispirochaeta smaragdinae 0 genus 1616789 1 145 1 1307761 145 0 species Salinispira pacifica 16 1643685 1758 family 0 Borrelia genus 0 24 1039 138 8 1 species 0 Borrelia recurrentis 117 1 44449 Borrelia miyamotoi 0 species 1 47466 268 62 141 1 species 0 Borrelia parkeri Borrelia hermsii 0 species 140 1 77 143 1 78 Borrelia anserina species 0 Borrelia turicatae species 0 80 142 1 0 species Borrelia duttonii 333 1 40834 31 719 64895 8 1 Borreliella genus 0 0 species Borreliella burgdorferi 139 1 92 species 0 Borreliella bissettii 1 64897 92 1 1674146 128 Borrelia mayonii 0 species species 0 Borreliella garinii 150 1 29519 62088 1 76 Borreliella valaisiana 0 species 0 species Borreliella afzelii 29518 1 89 61 664662 1 species 0 Borreliella bavariensis 1643688 7 1047 order 0 0 family 1047 170 7 171 6 1 3 1003 Leptospira genus 0 Leptospira interrogans species 0 301 1 173 1 28183 326 Leptospira santarosai 0 species Leptospira borgpetersenii species 0 1 174 160 Leptospira biflexa species 0 144 172 1 species 0 Leptospira alstonii 28452 1 69 genus 0 44 338321 1 44 1 29510 Turneriella parva 0 species 0 clade 15085 71 1783257 0 phylum 2 134625 141 2 1921781 141 0 class order 0 141 2 1921782 2 1921783 1 1 141 Kiritimatiellaceae 0 family genus 0 140 1 1921784 140 1 1307763 species 0 Kiritimatiella glycovorans 0 phylum 1051 19 204428 Chlamydiia 0 class 1 1051 19 204429 1 0 order 699 12 51291 family 0 12 809 699 0 no rank 12 1113537 699 810 12 1 6 699 Chlamydia genus 0 1 813 34 species 0 Chlamydia trachomatis species 0 Chlamydia abortus 1 83555 44 23 1 83556 Chlamydia felis species 0 83558 1 198 Chlamydia pneumoniae 0 species 34 1 83560 Chlamydia muridarum 0 species 98 1 83554 Chlamydia psittaci 0 species 83559 1 42 0 species Chlamydia suis Chlamydia pecorum species 0 1 85991 52 Chlamydia gallinacea 0 species 1 1457153 43 1 83557 60 Chlamydia caviae 0 species species 0 Chlamydia avium 1457141 1 65 351 2 1 1963360 6 0 order Parachlamydiales 66 1 92712 family 0 66 34093 1 genus 0 Simkania negevensis species 0 66 83561 1 family 0 92713 3 210 1 118 2 83551 1 Parachlamydia genus 0 117 83552 1 Parachlamydia acanthamoebae 0 species genus 0 1 282132 92 389348 1 92 species 0 Candidatus Protochlamydia naegleriophila 73 92714 1 0 family genus 0 73 71666 1 Waddlia chondrophila 0 species 73 71667 1 phylum 0 1 256845 96 1 1313211 96 0 class order 0 1 278082 96 1674876 1 96 0 no rank 96 1 2094242 species 0 Victivallales bacterium CCUG 44730 1928 74201 18 0 phylum class 0 1955630 2 110 110 717963 2 0 order 717964 2 110 family 0 2 511745 110 genus 0 1 511746 52 species 0 Methylacidiphilum infernorum species 0 Methylacidiphilum fumariolicum 1 591154 58 1440 6 414999 class 0 Opitutales 0 order 1 825 415000 5 1 4 134623 1 4 824 Opitutaceae 0 family 246 1 1961799 genus 0 Lacunisphaera limnophila 0 species 1 1838286 246 0 genus 178440 1 252 107709 1 252 Opitutus terrae species 0 0 no rank 322 278955 1 0 species Opitutaceae bacterium TAV5 322 794903 1 415001 1 615 order 0 family 0 615 1 415002 442430 1 615 genus 0 1 395922 615 0 species Coraliomargarita akajimensis 1 6 203494 145 1 class 0 Verrucomicrobiae order 0 Verrucomicrobiales 144 2 1 48461 5 Akkermansiaceae family 0 1 142 4 1647988 1 1 239934 3 141 3 0 genus Akkermansia 0 species Akkermansia muciniphila 239935 1 69 69 1 1679444 species 0 Akkermansia glycaniphila 2 417295 204 0 no rank 1 2026799 116 0 species Verrucomicrobia bacterium Verrucomicrobia bacterium IMCC26134 0 species 88 1637999 1 2 134549 29 class 0 29 2 1 2 134550 0 genus Candidatus Xiphinematobacter 27 1 2648876 0 no rank Candidatus Xiphinematobacter sp. Idaho Grape species 0 27 1 1704307 11869 31 203682 0 phylum 6 373 6 666505 1 Phycisphaerae 0 class 0 order 2483366 2 80 80 2483367 2 0 family 2 2483368 80 0 genus Phycisphaerae bacterium L21-RPul-D3 species 0 38 1 1940790 species 0 Phycisphaerae bacterium ST-PulAB-D4 1941349 1 42 287 3 666506 order 0 Phycisphaeraceae 0 family 2 287 3 666507 1 genus 0 Phycisphaera 285 3 1 2 666508 547188 1 282 Phycisphaera mikurensis 0 species 8802 3 2517206 0 class 9 8802 3 1127829 1 Candidatus Brocadiales order 0 Candidatus Brocadiaceae 0 family 2 8793 1127830 2 1 0 genus 1 380738 8791 8791 1 174633 Candidatus Kuenenia stuttgartiensis 0 species 0 class Planctomycetia 1 22 203683 2694 6 2691354 4 558 order 0 family 0 467 2691357 3 265488 2 1 29 183 Rhodopirellula 0 genus 154 1 265606 0 species Rhodopirellula baltica 1 123 284 genus 0 Pirellula staleyi 0 species 284 125 1 91 1 2691358 0 family 91 1676125 1 genus 0 species 0 Thermogutta terrifontis 91 1 1331910 order 0 2691356 6 917 30 917 1763524 6 1 Isosphaeraceae 0 family 0 genus 154 1763521 1 Paludisphaera borealis species 0 1 1387353 154 1 127 2 392 78 genus 0 Isosphaera 0 species Isosphaera pallida 128 1 314 0 genus Singulisphaera 341 76 1 466152 2 species 0 Singulisphaera acidiphila 466153 1 265 order 0 2691355 2 270 1914233 2 270 0 family genus 0 Gemmata 1 2 113 270 105 0 no rank 165 2622970 1 species 0 Gemmata sp. SH-PL17 1 1630693 165 59 943 112 9 1 Planctomycetales order 0 126 8 1 82 884 Planctomycetaceae family 0 158 1649480 1 genus 0 158 120 1 Planctopirus limnophila 0 species Rubinisphaera 0 genus 1649490 2 1 29 174 Rubinisphaera brasiliensis species 0 145 1 119 Planctomyces 0 genus 30 307 3 118 1 no rank 0 277 2 2648843 1636152 1 148 0 species Planctomyces sp. SH-PL62 Planctomyces sp. SH-PL14 0 species 129 1632864 1 genus 0 163 1 1936111 1891926 1 163 species 0 Fuerstia marisgermanicae 0 phylum 13 40117 505 Nitrospira class 0 11 505 203693 13 1 189778 12 1 9 494 Nitrospirales order 0 family 0 Nitrospiraceae 1 189779 11 485 1 1 1234 5 241 2 genus 0 Nitrospira 1 1325564 80 species 0 Nitrospira japonica Candidatus Nitrospira inopinata species 0 24 1715989 1 54 1 330214 Nitrospira defluvii species 0 1 42253 81 Nitrospira moscoviensis species 0 122 1 28261 genus 0 Thermodesulfovibrio yellowstonii 0 species 122 28262 1 1 121 179 4 1 Leptospirillum genus 0 species group 0 47 655606 1 0 species Leptospirillum ferrooxidans 47 1 180 261385 1 47 species group 0 1 1660083 47 0 species Leptospirillum sp. Group II 'CF-1' 0 species group 261386 1 26 1 178606 26 Leptospirillum ferriphilum species 0 0 phylum 2571 200918 37 Thermotogae 0 class 3 2571 188708 37 1 0 order Thermotogales 1 2419 26 1222 1 188709 16 458 0 family 3 271 2335 11 1 Thermotoga 0 genus Thermotoga caldifontis species 0 1508419 1 28 93929 1 36 0 species Thermotoga petrophila Thermotoga maritima 0 species 2336 1 18 species 0 Thermotoga naphthophila 93930 1 23 0 species Thermotoga profunda 43 1508420 1 4 2631113 93 0 no rank 1 1157947 24 species 0 Thermotoga sp. Cell2 18 126740 1 Thermotoga sp. RQ2 0 species Thermotoga sp. 2812B 0 species 19 1157948 1 1 126738 32 Thermotoga sp. RQ7 species 0 2337 1 27 Thermotoga neapolitana species 0 0 genus Pseudothermotoga 1 5 1643951 187 2 58 1 38322 species 0 Pseudothermotoga elfii 1 57487 15 Pseudothermotoga hypogea 0 species Pseudothermotoga thermarum species 0 55 119394 1 57 177758 1 Pseudothermotoga lettingae species 0 Fervidobacteriaceae 0 family 1 763 9 1643950 1 3 476 2420 5 1 Thermosipho 0 genus Thermosipho melanesiensis species 0 101 46541 1 0 no rank 2676525 2 265 1462747 1 98 0 species Thermosipho sp. 1063 1437364 1 167 Thermosipho sp. 1070 0 species Thermosipho africanus species 0 107 1 2421 genus 0 286 2422 3 Fervidobacterium nodosum 0 species 1 2424 120 0 species Fervidobacterium islandicum 68 1 2423 Fervidobacterium pennivorans species 0 98 93466 1 order 0 1643947 5 560 family 0 1643949 5 560 genus 0 Marinitoga 351 2 1 160798 3 168 1 149715 Marinitoga piezophila 0 species 1 2640159 181 no rank 0 1 1545835 181 0 species Marinitoga sp. 1137 1 1511648 116 0 genus 116 1006576 1 Defluviitoga tunisiensis 0 species 1 28236 93 genus 0 93 69499 1 Petrotoga mobilis species 0 order 0 786 5 1643946 family 0 786 5 1643948 1 3 651456 729 1 0 genus Kosmotoga 1 1330330 630 0 species Kosmotoga pacifica 98 651457 1 Kosmotoga olearia species 0 57 1 1 2 1184396 genus 0 Mesotoga 56 1 1184387 0 species Mesotoga prima 0 phylum 343 200940 7 67799 7 343 0 class 0 order Thermodesulfobacteriales 1 188710 7 343 1 2 342 188711 6 1 Thermodesulfobacteriaceae 0 family Thermodesulfobacterium 0 genus 1740 3 1 5 180 101 1295609 1 species 0 Thermodesulfobacterium geofontis Thermodesulfobacterium commune species 0 74 1741 1 1 241192 88 0 genus species 0 Thermodesulfatator indicus 1 171695 88 1 444090 72 genus 0 0 species Caldimicrobium thiodismutans 72 1 1653476 clade 0 1 2498710 116 116 1 67814 phylum 0 1 693071 116 0 class 693072 1 116 0 order 116 1 693073 family 0 genus 0 1 693074 116 116 1 693075 Caldisericum exile 0 species no rank 0 2323 2 81 81 2 1783234 clade 0 0 phylum 95818 1 8 0 no rank 8 1 1895827 8 1 2056494 0 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 clade 73 95901 1 class 0 1 2497643 73 order 0 2497644 1 73 2497645 1 73 0 family 73 1 1551504 genus 0 73 673862 1 0 species Candidatus Babela massiliensis 0 phylum 183 4 68297 203486 4 1 1 183 Dictyoglomia 0 class 2 182 3 203487 1 Dictyoglomales order 0 180 203488 2 family 0 180 2 13 genus 0 90 513050 1 species 0 Dictyoglomus turgidum species 0 Dictyoglomus thermophilum 14 1 90 clade 0 1783270 330 165585 127 456828 1 0 phylum genus 0 1 456826 127 0 species Candidatus Cloacimonas acidaminovorans 456827 1 127 142182 7 585 phylum 0 585 5 1 219685 7 class 0 Gemmatimonadetes 580 1 1 6 219686 order 0 Gemmatimonadales 0 family Gemmatimonadaceae 1 5 219687 579 1 2 1706036 1 4 295 Gemmatirosa 0 genus Gemmatirosa kalamazoonesis species 0 861299 1 291 283 2 173479 genus 0 1 1379270 130 species 0 Gemmatimonas phototrophica 173480 1 153 species 0 Gemmatimonas aurantiaca clade 0 68336 320 164686 0 phylum Bacteroidetes 1 297 976 162489 11 429 3 1 5 1100069 order 0 Bacteroidetes Order II. Incertae sedis 426 4 563843 family 0 Rhodothermus genus 0 29548 2 1 1 100 29549 1 99 Rhodothermus marinus species 0 114 146918 1 genus 0 1 146919 114 0 species Salinibacter ruber 0 no rank 212 1196022 1 212 1779382 1 0 species Rhodothermaceae bacterium RA class 0 1678 4 1937959 1 1936988 4 1678 1 order 0 Saprospirales 1937961 1 1442 0 family 0 genus 1442 1 2349 species 0 Haliscomenobacter hydrossis 1442 2350 1 family 0 235 2 89374 0 genus Saprospira 1 2 1007 235 4 0 species Saprospira grandis 1008 1 231 1 2201 15 1853228 1 Chitinophagia class 0 Chitinophagales 0 order 14 1853229 1 10 2200 2190 3 1 563835 13 0 family Chitinophagaceae 398041 2 1 1 567 Flavisolibacter 0 genus 0 species Flavisolibacter tropicus 1492898 1 566 0 genus 1 354354 509 1 354356 509 Niastella koreensis species 0 genus 0 Arachidicoccus 1 1769012 2 193 4 2636138 1 189 0 no rank 189 1850526 1 Arachidicoccus sp. BS20 species 0 1 379899 3 324 1 0 genus Niabella 446683 1 157 Niabella soli 0 species 166 1 1176587 Niabella ginsenosidivorans 0 species 79328 3 1 2 375 Chitinophaga 0 genus species 0 Chitinophagaceae bacterium 13 170 1 2029983 species 0 Chitinophaga pinensis 1 79329 203 0 genus 219 649460 1 Filimonas lacunae species 0 219 477680 1 Sphingobacteriia class 0 117747 23 1 3 7874 1 22 200666 7871 17 0 order Sphingobacteriales 16 7854 21 84566 1 Sphingobacteriaceae 0 family 6 28453 1 14 1208 Sphingobacterium 0 genus 4 2609468 958 no rank 0 213 1 2003121 0 species Sphingobacterium sp. G1-14 Sphingobacterium sp. 21 0 species 1 743722 212 0 species Sphingobacterium sp. B29 226 1 1933220 Sphingobacterium sp. ML3W species 0 1 1538644 307 species 0 Sphingobacterium mizutaii 1 1010 236 Pedobacter genus 0 16 2316 84567 6 1 1 984 194 Pedobacter heparinus species 0 1 2628915 1019 0 no rank 0 species Pedobacter sp. PACM 27299 1 1727164 1019 0 species Pedobacter cryoconitis 491 1 188932 310 1 363852 species 0 Pedobacter ginsengisoli 286 430522 1 Pedobacter steynii species 0 405 1 1 929509 2 0 genus Solitalea Solitalea canadensis species 0 1 995 404 genus 0 1649482 1 258 species 0 Pseudopedobacter saltans 258 151895 1 no rank 0 2773 84568 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 species 2773 1986952 1 4 423349 1 15 878 Mucilaginibacter 0 genus 369 1550579 1 0 species Mucilaginibacter gotjawali species 0 Mucilaginibacter sp. BJC16-A31 319 1234841 1 2617802 1 175 0 no rank 1 1300914 175 Mucilaginibacter sp. PAMC 26640 0 species 6 7272 200643 55 1 Bacteroidia 0 class order 0 7 1970189 1414 1 1573805 425 family 0 0 genus 425 2060722 1 1 1717717 425 Marinifilaceae bacterium SPP2 0 species 1 1970190 165 family 0 0 genus 165 1 1970191 species 0 Salinivirga cyanobacteriivorans 1 1307839 165 1471398 2 549 0 family 549 5 1 2 1471399 genus 0 Draconibacterium 544 1168034 1 Draconibacterium orientale species 0 Marinilabiliaceae 0 family 3 275 558415 3 1 272 3 1 1193324 2 0 genus Alkalitalea Alkalitalea saponilacus 0 species 1 889453 269 1 171549 47 5852 8 0 order Bacteroidales 0 family 162 1853231 1 283168 1 162 0 genus 1 28118 162 0 species Odoribacter splanchnicus 552 4 1 5 2005525 0 family Tannerellaceae 2 195950 265 0 genus 1 2620507 98 0 no rank species 0 Tannerella sp. oral taxon HOT-286 98 1 712710 28112 1 167 species 0 Tannerella forsythia genus 0 283 2 375288 138 1 2649774 no rank 0 0 species Parabacteroides sp. CT06 138 1 2025876 Parabacteroides distasonis 0 species 145 823 1 2 2005523 147 family 0 147 1 1 2 346096 genus 0 Paludibacter 146 185300 1 species 0 Paludibacter propionicigenes 11 815 1 4 1723 Bacteroidaceae family 0 8 1719 10 816 1 Bacteroides genus 0 Bacteroides caecimuris species 0 148 1796613 1 0 species Bacteroides thetaiotaomicron 1 818 188 species 0 Bacteroides fragilis 817 1 327 135 290053 1 Bacteroides helcogenes species 0 1 28119 67 Bacteroides zoogleoformans species 0 1 28113 366 0 species Bacteroides heparinolyticus Bacteroides ovatus 0 species 1 28116 204 1 246787 179 Bacteroides cellulosilyticus 0 species 97 1 47678 species 0 Bacteroides caccae 0 family 196 171550 2 genus 0 1 239759 85 Alistipes finegoldii 0 species 85 1 214856 111 1611681 1 genus 0 species 0 Mucinivorans hirudinis 1433126 1 111 0 no rank 80 185291 1 Bacteroidales bacterium CF 0 species 1400053 1 80 333046 5 1214 no rank 0 0 genus 810 909656 3 151 357276 1 Bacteroides dorei species 0 species 0 Bacteroides vulgatus 1 821 127 532 376805 1 0 species Bacteroides salanitronis Candidatus Azobacteroides genus 0 511434 2 1 2 404 Candidatus Azobacteroides pseudotrichonymphae 0 species 402 1 511435 0 family 10 171552 1113 10 838 1 6 1113 Prevotella genus 0 93 28132 1 0 species Prevotella melaninogenica 304 28131 1 0 species Prevotella intermedia 1 1177574 134 species 0 Prevotella jejuni 52227 1 118 Prevotella dentalis 0 species 1 839 108 Prevotella ruminicola species 0 110 2638335 1 0 no rank 1 652716 110 Prevotella sp. oral taxon 299 0 species Prevotella fusca species 0 123 1 589436 Prevotella enoeca 0 species 1 76123 76 species 0 Prevotella denticola 1 28129 41 0 family 2005520 5 353 genus 0 307628 1 80 species 0 Petrimonas mucosa 80 1642646 1 1 294702 2 108 5 genus 0 Proteiniphilum 0 species Proteiniphilum saccharofermentans 103 1 1642647 5 165 2 1784836 1 Fermentimonas genus 0 160 1562970 1 Fermentimonas caenicola species 0 247 171551 3 family 0 7 247 3 836 1 Porphyromonas genus 0 155 1 837 Porphyromonas gingivalis species 0 Porphyromonas asaccharolytica 0 species 85 28123 1 1 2005519 57 family 0 57 1 397864 0 genus Barnesiella viscericola species 0 57 397865 1 class 0 Flavobacteriia 131498 19 1 117743 142 Flavobacteriales 0 order 70 131479 200644 141 1 1 49546 101 119511 305 family 0 Flavobacteriaceae 0 genus Siansivirga 1432 1 1 2 1204360 species 0 Siansivirga zeaxanthinifaciens 1 762954 1431 genus 0 1 252306 141 141 1 252307 0 species Robiginitalea biformata Flavobacterium 0 genus 25 8799 9 237 1 Flavobacterium gilvum 0 species 813 1 1492737 1 55197 703 0 species Flavobacterium branchiophilum Flavobacterium columnare 0 species 1615 996 1 1 1306519 761 species 0 Flavobacterium commune 781 1 96345 species 0 Flavobacterium psychrophilum 1 1763534 775 Flavobacterium crassostreae species 0 2396 986 1 Flavobacterium johnsoniae 0 species 930 312277 1 Flavobacterium indicum species 0 1 417127 1136 0 genus species 0 Zunongwangia profunda 1136 1 398743 Capnocytophaga genus 0 44 4801 15 1016 1 Capnocytophaga cynodegmi species 0 1 28189 535 528 1019 1 species 0 Capnocytophaga sputigena 28188 1 493 species 0 Capnocytophaga canimorsus 327575 1 251 0 species Capnocytophaga leadbetteri 1 1017 247 species 0 Capnocytophaga gingivalis 0 species Capnocytophaga haemolytica 193 1 45243 Capnocytophaga ochracea 0 species 1 1018 214 species 0 Capnocytophaga stomatis 1848904 1 380 1916 2640652 6 no rank 0 224 1705617 1 0 species Capnocytophaga sp. oral taxon 323 410 1 1945657 Capnocytophaga sp. H2931 0 species species 0 Capnocytophaga sp. ChDC OS43 209053 1 263 1316593 1 254 0 species Capnocytophaga sp. oral taxon 864 1316596 1 312 species 0 Capnocytophaga sp. oral taxon 878 Capnocytophaga sp. H4358 species 0 1945658 1 453 1 52959 6 36278 106 genus 0 Polaribacter Polaribacter vadi 0 species 1774273 1 6872 196858 3 23168 0 no rank 1 2058137 10718 0 species Polaribacter sp. ALD11 313598 1 5414 species 0 Polaribacter sp. MED152 7036 1 1529069 0 species Polaribacter sp. BM10 0 species Polaribacter reichenbachii 6132 996801 1 1 1649495 1602 0 genus no rank 0 1 2622645 1602 1602 1936081 1 species 0 Seonamhaeicola sp. S2-3 genus 0 178469 1 679 species 0 Arenibacter algicola 1 616991 679 612 5 1 3 111500 genus 0 Muricauda 403 111501 1 Muricauda ruestringensis species 0 204 1 516051 Muricauda lutaonensis 0 species 0 genus 112040 1 366 0 species Zobellia galactanivorans 1 63186 366 0 genus 1292 216431 1 Croceibacter atlanticus species 0 1 313588 1292 1 4 291183 5782 43 genus 0 Lacinutrix 0 no rank 2 2647285 3846 1772 1 983544 Lacinutrix sp. 5H-3-7-4 species 0 2057808 1 2074 Lacinutrix sp. Bg11-31 0 species Lacinutrix venerupis 0 species 1893 1 1486034 617 1176327 1 0 genus no rank 0 617 2636237 1 1 2094025 617 Aureitalea sp. RR4-38 species 0 12311 25 1 104267 5 genus 0 Tenacibaculum 4715 1850252 1 species 0 Tenacibaculum todarodis species 0 Tenacibaculum jejuense 584609 1 2539 species 0 Tenacibaculum dicentrarchi 2806 669041 1 Tenacibaculum maritimum species 0 1 107401 2226 Myroides 0 genus 5 76831 1 28 2140 0 no rank 2 2642485 1024 497 1583100 1 0 species Myroides sp. A21 527 1 1458492 Myroides sp. ZB35 0 species Myroides profundi species 0 539 1 480520 76832 1 549 Myroides odoratimimus 0 species Lutibacter 0 genus 358023 2 1 10 1939 1622118 1 1929 Lutibacter profundi 0 species 2040 5 1 2 336276 genus 0 Olleya 2035 1 2615019 0 no rank 1 2058135 2035 Olleya sp. Bg11-27 0 species 0 genus 1 1518147 1640 1640 1790137 1 species 0 Wenyingzhuangia fucanilytica 0 genus 1712 261827 1 1736674 1 1712 Algibacter alginicilyticus species 0 Winogradskyella genus 0 8 3217 286104 3 1 2 2615021 3209 0 no rank Winogradskyella sp. PG-2 species 0 754409 1 1871 0 species Winogradskyella sp. J14-2 1338 1936080 1 11 2806 225842 3 1 Formosa genus 0 0 no rank 2644710 2 2795 1 1336794 1584 species 0 Formosa sp. Hel1_33_131 0 species Formosa sp. Hel3_A1_48 1211 1336795 1 898 61432 2 0 no rank 1150389 1 754 Flavobacteriaceae bacterium UJ101 species 0 0 species Flavobacteriaceae bacterium 3519-10 144 531844 1 1423 1209327 1 genus 0 Flavivirga eckloniae 0 species 1423 1803846 1 genus 0 389486 1 554 no rank 0 554 1 2648869 species 0 Sediminicola sp. YIK13 1453352 1 554 genus 0 Cellulophaga 5188 25 1 4 104264 species 0 Cellulophaga baltica 76594 1 1697 979 1 1867 species 0 Cellulophaga lytica 0 species Cellulophaga algicola 1 59600 1599 genus 0 Dokdonia 3275 36 1 4 326319 1178 326320 1 0 species Dokdonia donghaensis 2615033 2 2061 no rank 0 species 0 Dokdonia sp. 4H-3-7-5 1032 983548 1 0 species Dokdonia sp. MED134 1 313590 1029 2241 11 1 292691 5 0 genus Gramella 552 1 1913577 Gramella sp. LPB0144 species 0 778 1 411153 Gramella forsetii species 0 2126553 1 458 Gramella sp. SH35 species 0 Gramella flava 0 species 1 1486245 442 0 genus 83612 1 1423 1423 57029 1 0 species Psychroflexus torquis 2094 2700084 1 0 genus species 0 Lutibacter sp. LPB0138 1850246 1 2094 1219 393005 1 0 genus 1 2069432 1219 0 species Tamlana sp. UJ94 1170 1 153265 genus 0 1170 101385 1 species 0 Aequorivita sublithincola genus 0 Maribacter 1 252356 5 4279 18 1 1178778 562 species 0 Maribacter cobaltidurans 0 no rank 3 2615042 3699 1 1836467 1226 Maribacter sp. T28 species 0 1 1644130 1733 Maribacter sp. 1_2014MBL_MicDiv 0 species 1 313603 740 0 species Maribacter sp. HTCC2170 3267 16 1 363408 5 genus 0 Nonlabens 1 319236 709 Nonlabens sediminis species 0 Nonlabens dokdonensis 0 species 884 328515 1 no rank 0 2 2615035 1658 695 1476901 1 Nonlabens sp. MIC269 0 species 1 2058134 963 Nonlabens sp. MB-3u-79 species 0 143222 1 833 0 genus 833 1 2633436 no rank 0 Salegentibacter sp. T436 species 0 1729720 1 833 family 0 2 1333713 422 1 2 267986 422 4 genus 0 Owenweeksia Owenweeksia hongkongensis 0 species 1 253245 418 0 family 8987 2762318 19 570 34084 1 genus 0 species 0 Riemerella anatipestifer 570 34085 1 28 2610 308865 6 1 Elizabethkingia 0 genus Elizabethkingia genomosp. 3 0 species 1756149 1 363 1 1756150 338 0 species Elizabethkingia genomosp. 4 species 0 Elizabethkingia miricola 523 172045 1 238 1 514 Elizabethkingia meningoseptica 0 species 1117645 1 844 Elizabethkingia anophelis 0 species genus 0 226 28250 1 226 28251 1 species 0 Ornithobacterium rhinotracheale 263 1013 1 genus 0 Weeksella virosa 0 species 263 1 1014 5318 10 2782232 0 no rank genus 0 Chryseobacterium 5097 17 1 9 59732 2411 1 1685010 Chryseobacterium glaciei 0 species 1 253 698 0 species Chryseobacterium indologenes 1 1265445 113 0 species Chryseobacterium camelliae 1 558152 403 Chryseobacterium piperi species 0 1184 3 2593645 no rank 0 459 2015076 1 0 species Chryseobacterium sp. T16E-39 301 1721091 1 Chryseobacterium sp. IHB B 17019 0 species Chryseobacterium sp. StRB126 species 0 1 878220 424 271 1324352 1 0 species Chryseobacterium gallinarum 221 2782228 1 0 genus Chryseobacterium taklimakanense 0 species 1 536441 221 2 1853230 375 family 0 Fluviicola genus 0 332102 2 1 9 375 Fluviicola taffensis species 0 1 191579 366 1314 39782 9 family 0 0 genus Blattabacterium 1 9 34098 1314 23 6 2647581 954 0 no rank 0 species Blattabacterium sp. (Blaberus giganteus) 128 1 1186051 species 0 Blattabacterium sp. (Blatta orientalis) 182 1 367806 Blattabacterium sp. (Mastotermes darwiniensis) species 0 39768 1 133 species 0 Blattabacterium sp. (Periplaneta americana) 1 367488 157 1316444 1 190 0 species Blattabacterium sp. (Nauphoeta cinerea) 1 624186 164 Blattabacterium sp. (Blattella germanica) species 0 Blattabacterium punctulatus 0 species 164514 1 155 Blattabacterium cuenoti 0 species 1 1653831 182 348 1 1 3 1755828 0 family Ichthyobacteriaceae 2 1755829 1 4 347 Ichthyobacterium genus 0 Ichthyobacterium seriolicida species 0 343 1 242600 0 no rank 452 4 313602 Candidatus Sulcia genus 0 1 348 2 336809 1 0 species Candidatus Sulcia muelleri 347 1 336810 genus 0 Candidatus Walczuchella 1 2 1940138 104 1 1 1415657 103 Candidatus Walczuchella monophlebidarum 0 species 6 11526 768503 52 1 Cytophagia class 0 29 11520 768507 51 1 Cytophagales 0 order family 0 752 2762301 2 Marivirga 0 genus 869806 2 1 1 752 species 0 Marivirga tractuosa 1 1006 751 0 family 1853234 2 656 2 59740 1 7 656 Persicobacter genus 0 0 no rank 649 1 2664020 Persicobacter sp. JZB09 0 species 1 1085624 649 9 563798 1565 0 family Cyclobacterium 0 genus 14 728 3 68288 1 1 320787 393 Cyclobacterium amurskyense 0 species Cyclobacterium marinum 0 species 104 1 321 genus 0 Algoriphagus 1 2 246875 206 4 1727163 1 202 0 species Algoriphagus sp. M8-2 Belliella 0 genus 2 397 232244 2 1 1 232259 395 Belliella baltica species 0 2 234 2 390846 1 Echinicola 0 genus 390884 1 232 Echinicola vietnamensis 0 species family 0 Flammeovirgaceae 1981 3 1 3 200667 622 1 59739 0 genus 1 2637820 622 no rank 0 1 1191459 622 Flammeovirga sp. MY04 species 0 1356 1 340671 no rank 0 Flammeovirgaceae bacterium 311 species 0 1356 1 1257021 Cytophagaceae family 0 13 89373 1 9 2696 1 861914 132 genus 0 0 no rank 2620963 1 132 0 species Fibrella sp. ES10-3-2-2 132 1834519 1 1 6 107 1130 1 0 genus Spirosoma Spirosoma montaniterrae 0 species 1 1178516 170 species 0 Spirosoma radiotolerans 1 1379870 142 Spirosoma aerolatum species 0 1211326 1 198 0 species Spirosoma sp. HA7 535 2057025 1 0 species Spirosoma rigui 564064 1 84 genus 0 Cytophaga 1 978 2 254 4 250 1 985 Cytophaga hutchinsonii 0 species 0 genus 147 120831 1 Dyadobacter fermentans 0 species 147 1 94254 genus 0 105 1 836 0 species Runella slithyformis 106 1 836 319458 1 188 genus 0 188 316068 1 species 0 Leadbetterella byssophila 0 family 238 1501348 3 0 genus 273135 1 62 0 no rank 1 2641185 62 0 species Cardinium endosymbiont of Encarsia pergandiella 62 1 249402 genus 0 Candidatus Amoebophilus 1 281119 2 176 1 175 281120 1 0 species Candidatus Amoebophilus asiaticus 707 2 1937968 family 0 0 genus Bernardetia 1 2 1937972 707 3 704 1 999 0 species Bernardetia litoralis 1 2896 16 1853232 1 Hymenobacteraceae 0 family Pontibacter genus 0 323449 3 1 5 275 0 species Pontibacter akesuensis 1 388950 113 0 species Pontibacter korlensis 157 1 400092 6 1665 89966 8 1 Hymenobacter 0 genus 260 1 1446467 Hymenobacter swuensis 0 species 5 2615202 1250 no rank 0 species 0 Hymenobacter sp. DG25B 1385664 1 108 384 1484116 1 species 0 Hymenobacter sp. PAMC 26554 Hymenobacter sp. DG25A species 0 1385663 1 68 1356852 1 165 Hymenobacter sp. APR13 species 0 1 1484118 525 0 species Hymenobacter sp. PAMC 26628 1 1411621 149 species 0 Hymenobacter sedentarius 0 genus Rufibacter 955 4 1 4 1379908 339 512763 1 Rufibacter tibetensis 0 species 612 2639626 2 0 no rank 335 1 1379910 Rufibacter sp. DG31D species 0 277 1379909 1 0 species Rufibacter sp. DG15C phylum 0 313 1134404 2 313 2 795747 class 0 order 0 313 795748 2 69 1334117 1 family 0 69 1134403 1 genus 0 species 0 Melioribacter roseus 69 1 1134405 0 family 244 795749 1 0 genus 244 795750 1 1 591197 244 Ignavibacterium album 0 species 1884 21 1090 phylum 0 1884 2 1 21 191410 0 class Chlorobia Chlorobiales order 0 10 1882 20 191411 1 19 191412 1 4 1872 Chlorobiaceae 0 family 1 5 1101 340 9 0 genus Prosthecochloris 2632826 3 206 0 no rank 1 281093 25 Prosthecochloris sp. GSB1 0 species 1974213 1 120 species 0 Prosthecochloris sp. HL-130-GSB species 0 Prosthecochloris sp. CIB 2401 1 1868325 61 Prosthecochloris aestuarii 0 species 125 1102 1 0 no rank 1285 274493 8 131 1 1 3 1099 genus 0 Pelodictyon 1 1100 36 Pelodictyon luteolum species 0 94 1 34090 Pelodictyon phaeoclathratiforme 0 species 1091 5 1 6 1154 Chlorobium genus 0 0 species Chlorobium chlorochromatii 92 337090 1 0 species Chlorobium phaeovibrioides 1 1094 79 1 1096 825 Chlorobium phaeobacteroides 0 species 152 1 1092 Chlorobium limicola species 0 0 genus 1 100715 87 87 1 100716 0 species Chloroherpeton thalassium 156 6 1 256319 4 0 genus Chlorobaculum 1 274539 58 Chlorobaculum parvum 0 species 274537 1 55 Chlorobaculum limnaeum 0 species 37 1 1097 0 species Chlorobaculum tepidum 187 2 65842 0 phylum 0 class Fibrobacteria 187 2 1 204430 2 order 0 1 218872 185 204431 1 185 0 family 0 genus 185 832 1 833 1 185 species 0 Fibrobacter succinogenes phylum 0 Proteobacteria 872867 176 1 1224 1881 6 1807140 1272 class 0 14 1272 6 225057 1 Acidithiobacillales 0 order family 0 Acidithiobacillaceae 1258 13 1 225058 5 0 genus Acidithiobacillus 1245 3 1 119977 4 0 species Acidithiobacillus ferrivorans 160808 1 756 1 33059 312 Acidithiobacillus caldus 0 species 920 1 174 species 0 Acidithiobacillus ferrooxidans 580370 3 137 0 class 0 order 3 580371 137 1 3 580372 137 2 0 family Mariprofundaceae 377315 2 135 0 genus Mariprofundus ferrinatatus 0 species 54 1 1921087 0 species Mariprofundus aestuarium 81 1 1921086 30093 164 68525 subphylum 0 1 29547 65 11316 4 class 0 Epsilonproteobacteria Campylobacterales 0 order 10 10655 213849 62 1 family 0 3657 13 72293 0 genus Helicobacter 1 209 12 3610 2 89 1 213 species 0 Helicobacter cinaedi Helicobacter mustelae species 0 66 1 217 species 0 Helicobacter typhlonius 67 76936 1 96 32025 1 0 species Helicobacter hepaticus 0 no rank 2593540 1 64 species 0 Helicobacter sp. MIT 01-6242 64 222136 1 79 1 212 species 0 Helicobacter acinonychis Helicobacter pylori species 0 1 210 2714 1 1591088 61 Helicobacter himalayensis species 0 0 species Helicobacter felis 1 214 93 species 0 Helicobacter cetorum 1 138563 174 1 37372 105 species 0 Helicobacter bilis 1 843 47 0 genus 844 1 47 species 0 Wolinella succinogenes family 0 263 2771471 4 1 202746 3 197 1 genus 0 Sulfurimonas 0 species Sulfurimonas denitrificans 116 39766 1 80 1 202747 Sulfurimonas autotrophica species 0 genus 0 66 286130 1 148813 1 66 species 0 Sulfuricurvum kujiense 3 2771472 523 0 family genus 0 248 1 269260 Nitratifractor salsuginis species 0 248 1 269261 275 2 265570 0 genus 102 1 2646778 0 no rank Sulfurovum sp. NBC37-1 0 species 1 387093 102 173 1 206403 Sulfurovum lithotrophicum 0 species 0 family Campylobacteraceae 1 72294 41 6202 8 5 796 9 57665 1 Sulfurospirillum 0 genus 0 species Sulfurospirillum barnesii 126 44674 1 Sulfurospirillum multivorans species 0 92 66821 1 0 species Sulfurospirillum deleyianum 65553 1 85 species 0 Sulfurospirillum cavolei 1 366522 52 2618290 3 343 no rank 0 0 species Sulfurospirillum sp. UCH001 139 1581011 1 117 1 220622 0 species Sulfurospirillum sp. JPD-1 1986224 1 87 species 0 Sulfurospirillum sp. SL2-1 1 194424 93 species 0 Sulfurospirillum halorespirans 5 2321108 1313 0 no rank 663 3 1 28196 3 genus 0 Arcobacter species 0 Arcobacter butzleri 380 28197 1 280 28199 1 species 0 Arcobacter nitrofigilis 330 2321187 1 0 genus 330 1 1850254 Arcobacter sp. LPB0137 species 0 no rank 0 320 1 2321207 Arcobacter sp. L 0 species 320 1 944547 Campylobacter genus 0 21 4085 194 26 1 Campylobacter pinnipediorum species 0 277 1965231 1 0 species Campylobacter lari 1 201 440 827 1 174 Campylobacter ureolyticus species 0 0 species Campylobacter cuniculorum 97 374106 1 1 200 26 0 species Campylobacter curvus Campylobacter concisus species 0 109 199 1 1 206 210 species 0 Campylobacter sputorum 0 species Campylobacter hyointestinalis 1 198 120 Campylobacter coli 0 species 1 195 263 82 1 76517 0 species Campylobacter hominis 198 1 497724 species 0 Campylobacter subantarcticus 0 species Campylobacter insulaenigrae 1 260714 146 2593542 4 565 no rank 0 1 1660073 82 0 species Campylobacter sp. RM6137 Campylobacter sp. RM12175 species 0 1660076 1 99 84 1 1660074 Campylobacter sp. RM8964 0 species species 0 Campylobacter sp. RM16704 1 1500960 300 species 0 Campylobacter iguaniorum 1244531 1 113 1 196 192 Campylobacter fetus 0 species 114 1 488546 0 species Campylobacter peloridis 378 1 197 Campylobacter jejuni species 0 0 species Campylobacter volucris 1 1031542 116 Campylobacter gracilis 0 species 824 1 92 species 0 Campylobacter avium 158 522485 1 93 75658 1 Campylobacter lanienae species 0 Campylobacter helveticus species 0 101 28898 1 2 235899 657 0 order 0 family 2795691 1 68 genus 0 269258 1 68 1 2624044 68 0 no rank 68 1 387092 Nitratiruptor sp. SB155-2 0 species 589 1 224467 0 family 1 191291 589 genus 0 1 244787 589 Nautilia profundicola species 0 2 18777 99 28221 1 Deltaproteobacteria 0 class order 0 213462 5 335 family 0 54 213465 1 genus 0 1 29526 54 119484 1 54 species 0 Syntrophobacter fumaroxidans 4 213468 281 family 0 genus 0 1 43773 32 32 1 316277 Syntrophus aciditrophicus 0 species genus 0 74 60892 1 60893 1 74 Desulfobacca acetoxidans species 0 Desulfomonile 0 genus 1 175 2 2357 1 1 2358 174 Desulfomonile tiedjei 0 species 0 order 113 453227 1 family 0 453228 1 113 genus 0 113 453229 1 Desulfarculus baarsii 0 species 453230 1 113 9703 125 1 29 30 0 order Myxococcales 0 suborder 4359 80811 19 619 1524215 4 0 family Anaeromyxobacter genus 0 2 619 4 161492 1 2620896 2 348 no rank 0 species 0 Anaeromyxobacter sp. Fw109-5 174 1 404589 447217 1 174 species 0 Anaeromyxobacter sp. K 269 1 161493 Anaeromyxobacter dehalogenans 0 species 1 31 8 1846 4 family 0 Myxococcaceae Myxococcus genus 0 8 1223 32 5 1 1297742 1 286 Myxococcus hansupus species 0 33 1 517 Myxococcus fulvus species 0 species 0 Myxococcus xanthus 179 34 1 83455 1 233 0 species Myxococcus stipitatus 83461 2 619 0 genus 356 184914 1 Corallococcus coralloides species 0 Myxococcus macrosporus species 0 35 1 263 2 75 2 1524213 1 Vulgatibacteraceae 0 family 1524214 1 73 0 genus 73 1 1391653 Vulgatibacter incomptus species 0 Archangiaceae 0 family 5 39 1 10 1819 0 genus 47 1 997 Archangium gephyra species 0 997 48 1 0 genus 1 40 230 230 1 41 Stigmatella aurantiaca 0 species 0 genus 42 1 329 species 0 Cystobacter fuscus 1 43 329 genus 0 253 44 1 253 83453 1 Melittangium boletus 0 species 1101 3 224462 0 suborder 3 224464 1 7 1101 Kofleriaceae 0 family Haliangium 0 genus 8 1094 162027 2 1 species 0 Haliangium ochraceum 1086 1 80816 7 80812 4118 0 suborder 0 family 312 2 1055686 genus 0 Sandaracinus 1 2 1055688 312 1 1 927083 311 species 0 Sandaracinus amylolyticus 3806 8 1 49 5 0 family Polyangiaceae Sorangium 0 genus 4 3333 39643 2 1 3329 56 1 0 species Sorangium cellulosum 0 genus Chondromyces 1 2 50 465 2 463 52 1 species 0 Chondromyces crocatus 213113 3 243 0 order 1 243 3 117942 1 Desulfurellaceae family 0 0 genus 158 1 33001 0 species Desulfurella acetivorans 158 33002 1 84 84404 1 genus 0 Hippea maritima species 0 84405 1 84 1 69541 23 4379 16 0 order Desulfuromonadales 8 3508 14 213422 1 Geobacteraceae family 0 7 3318 11 28231 1 Geobacter 0 genus 86 1 345632 Geobacter pickeringii 0 species 1340425 1 65 0 species Geobacter anodireducens 1835 351604 1 Geobacter uraniireducens species 0 Geobacter sulfurreducens 0 species 47 35554 1 Geobacter bemidjiensis 0 species 184 225194 1 no rank 0 728 2627627 2 Geobacter sp. M18 0 species 632 443143 1 0 species Geobacter sp. M21 443144 1 96 Geobacter daltonii species 0 1 1203471 114 species 0 Geobacter metallireducens 169 1 28232 1 313985 83 0 species Geobacter lovleyi 0 genus Geoalkalibacter 1 2 392332 182 3 1 483547 179 0 species Geoalkalibacter subterraneus 1 8 213421 855 1 0 family Desulfuromonadaceae 18 4 426 0 genus Pelobacter propionicus species 0 105 29543 1 64 1 2620299 0 no rank Pelobacter sp. SFB93 0 species 1 1842532 64 species 0 Pelobacter carbinolicus 19 1 134 species 0 Pelobacter acetylenicus 123 1 29542 1 890 3 428 14 0 genus Desulfuromonas no rank 0 2614637 1 102 102 1 1823759 Desulfuromonas sp. DDH964 0 species 312 1603606 1 species 0 Desulfuromonas soudanensis 14 213118 1 7 2064 Desulfobacterales 0 order Desulfobulbaceae 0 family 4 400 213121 6 1 99 1 427922 0 genus 99 427923 1 Desulfurivibrio alkaliphilus 0 species genus 0 50 893 1 50 1986146 1 Desulfobulbus sp. ORNL species 0 genus 0 117 53318 1 0 species Desulfocapsa sulfexigens 65555 1 117 0 genus Desulfotalea 1 2 109168 130 2 species 0 Desulfotalea psychrophila 84980 1 128 1657 2 1 7 213119 family 0 Desulfobacteraceae 896 3 1 1 297 Desulfococcus genus 0 species 0 Desulfococcus multivorans 127 1 897 169 1 181663 Desulfococcus oleovorans 0 species 131 2295 1 genus 0 Desulfobacterium autotrophicum species 0 131 2296 1 0 genus 608 1 28222 608 1 28223 Desulfobacula toluolica 0 species genus 0 218207 1 619 0 species Desulfatibacillum alkenivorans 1 259354 619 0 order Desulfovibrionales 1 22 213115 1938 7 family 0 91 213116 3 genus 0 Desulfomicrobium 1 3 898 91 4 1 132132 26 Desulfomicrobium orale 0 species 61 899 1 0 species Desulfomicrobium baculatum 1 213117 41 family 0 0 genus 45662 1 41 Desulfohalobium retbaense species 0 1 45663 41 0 family Desulfovibrionaceae 1799 9 1 17 194924 Desulfovibrio genus 0 4 1202 9 872 1 391 1 881 species 0 Desulfovibrio vulgaris 0 species Desulfovibrio magneticus 199 1 184917 0 species Desulfovibrio fairfieldensis 44742 1 62 0 species Desulfovibrio piger 67 901 1 0 species Desulfovibrio alaskensis 1 58180 58 2593640 1 60 0 no rank 631220 1 60 Desulfovibrio sp. G11 0 species 876 1 341 0 species Desulfovibrio desulfuricans Candidatus Desulfovibrio trichonymphae 0 species 1725232 1 20 76 2794998 1 0 genus 1 880 76 Desulfovibrio salexigens species 0 0 genus Pseudodesulfovibrio 239 2 1 4 2035811 Pseudodesulfovibrio profundus species 0 53 1 57320 Pseudodesulfovibrio indicus species 0 76 1716143 1 108 182210 1 species 0 Pseudodesulfovibrio aespoeensis genus 0 1 41707 118 1 29546 118 Lawsonia intracellularis 0 species 155 2582840 1 0 genus 0 species Desulfovibrio africanus 155 1 873 330 28216 1 57 97536 Betaproteobacteria class 0 19 3581 35 32003 1 Nitrosomonadales 0 order family 0 63 1 2008790 63 919 1 0 genus 1 36861 63 Thiobacillus denitrificans 0 species 0 family Sterolibacteriaceae 154 3 1 5 2008793 Methyloversatilis genus 0 378210 2 1 1 74 no rank 0 1 2639971 73 1842540 1 73 species 0 Methyloversatilis sp. RAC08 2 1054211 1 4 77 Sulfuritalea genus 0 species 0 Sulfuritalea hydrogenivorans 748811 1 73 214 2 2772226 family 0 0 genus 112 1778653 1 112 2637784 1 no rank 0 0 species Sulfuriferula sp. AH1 112 1 1985873 102 935200 1 genus 0 0 species Sulfuricella denitrificans 102 649841 1 0 family 301 90627 3 Gallionella 0 genus 96 2 1 1 165 370405 1 164 0 species Gallionella capsiferriformans 1 314343 136 genus 0 63745 1 136 Sideroxydans lithotrophicus species 0 4 1787 11 206379 1 Nitrosomonadaceae family 0 1 914 7 1477 2 genus 0 Nitrosomonas 1 916 136 Nitrosomonas eutropha 0 species Nitrosomonas europaea species 0 74 1 915 683 1 44577 Nitrosomonas ureae species 0 1 44574 217 Nitrosomonas communis species 0 no rank 0 2609265 2 365 species 0 Nitrosomonas sp. Is79A3 117 261292 1 species 0 Nitrosomonas sp. AL212 153948 1 248 306 3 35798 0 genus 0 species Nitrosospira lacus 1 1288494 176 35799 1 60 Nitrosospira briensis 0 species 0 species Nitrosospira multiformis 70 1231 1 Methylophilaceae 0 family 5 1043 12 32011 1 Methylovorus genus 0 81682 3 1 4 148 no rank 0 65 1 2634027 Methylovorus sp. MP688 0 species 65 1 887061 species 0 Methylovorus glucosotrophus 79 266009 1 1 16 2 127 2 0 genus Methylophilus 1 2630143 125 0 no rank 125 1 1662285 species 0 Methylophilus sp. TWE2 404 1 87 genus 0 87 1 405 species 0 Methylobacillus flagellatus 1679002 2 242 genus 0 Candidatus Methylopumilus turicensis 0 species 1581680 1 128 1581557 1 114 0 species Candidatus Methylopumilus planktonicus 1 3 359407 434 5 0 genus Methylotenera 141 1 359408 Methylotenera mobilis 0 species Methylotenera versatilis 0 species 288 1055487 1 0 no rank 880 119066 11 genus 0 31 1 1301080 0 species Candidatus Nasuia deltocephalinicola 1160784 1 31 1381133 1 82 genus 0 0 species Candidatus Profftella armatura 82 1 669502 genus 0 5 1 189384 species 0 Candidatus Tremblaya princeps 5 1 189385 622 3 1 33055 6 0 genus Kinetoplastibacterium Candidatus Kinetoplastibacterium crithidii 0 species 150 1 33056 Candidatus Kinetoplastibacterium oncopeltii species 0 98 994696 1 Kinetoplastibacterium blastocrithidii species 0 96 1 233181 176 1 994692 Candidatus Kinetoplastibacterium desouzaii species 0 Candidatus Kinetoplastibacterium galatii species 0 99 994695 1 327159 2 1 1 140 Candidatus Accumulibacter genus 0 0 species Candidatus Accumulibacter phosphatis 327160 1 139 7 1463 20 206389 1 Rhodocyclales 0 order 338 3 1 6 75787 0 family Rhodocyclaceae Azospira 0 genus 146937 2 1 1 119 118 1 146939 Azospira oryzae species 0 1 75788 50 no rank 0 Rhodocyclaceae bacterium 0 species 1898103 1 50 1 166 551759 2 1 Aromatoleum genus 0 species 0 Aromatoleum aromaticum 551760 1 165 0 family 2008795 1 110 73029 1 110 genus 0 0 species Dechloromonas aromatica 110 259537 1 1 12 2008794 1008 10 family 0 Zoogloeaceae genus 0 Thauera 450 5 1 6 33057 88 59405 1 Thauera aromatica species 0 Thauera humireducens species 0 1 1134435 82 2609274 2 196 no rank 0 0 species Thauera sp. K11 2005884 1 102 1 85643 94 Thauera sp. MZ1T 0 species 0 species Thauera chlorobenzoica 79 1 96773 2 548 5 12960 1 Azoarcus 0 genus no rank 0 2629479 2 374 1 748247 174 species 0 Azoarcus sp. KH32C 200 1 198107 species 0 Azoarcus sp. CIB 418699 1 105 0 species Azoarcus olearius Azoarcus sp. SY39 species 0 67 2067960 1 Burkholderiales order 0 567 87732 80840 227 1 84 119060 1 103 53921 Burkholderiaceae family 0 Ralstonia 0 genus 17 2915 5 48736 1 312 329 1 0 species Ralstonia pickettii Ralstonia mannitolilytica species 0 1111 105219 1 Ralstonia insidiosa 0 species 162 1 190721 Ralstonia solanacearum 0 species 1313 1 305 0 genus Cupriavidus 1 9 106589 10761 36 248026 1 285 species 0 Cupriavidus pinatubonensis 1 119219 2710 0 species Cupriavidus metallidurans 82541 1 203 species 0 Cupriavidus gilardii 0 no rank 1177 2 2640874 1 1389192 613 Cupriavidus sp. USMAHM13 species 0 species 0 Cupriavidus sp. USMAA2-4 564 1 876364 68895 1 5526 species 0 Cupriavidus basilensis Cupriavidus necator species 0 106590 1 351 0 species Cupriavidus sp. USMAA1020 473 1 367825 182 1 2571159 0 genus 1 412963 182 Paraburkholderia rhizoxinica species 0 0 genus Pandoraea 4388 22 1 93217 10 781 1 93219 Pandoraea norimbergensis species 0 Pandoraea vervacti 0 species 231 1 656178 species 0 Pandoraea thiooxydans 1 445709 140 species 0 Pandoraea pnomenusa 677 93220 1 1 93218 191 0 species Pandoraea apista 93222 1 138 species 0 Pandoraea sputorum species 0 Pandoraea oxalativorans 1 573737 372 1689 1 93221 species 0 Pandoraea pulmonicola 147 1 656179 Pandoraea faecigallinarum species 0 27 532 4 44013 1 Polynucleobacter genus 0 0 species Polynucleobacter necessarius 129 1 576610 1835254 1 129 0 species Polynucleobacter duraquae 247 1 576611 Polynucleobacter asymbioticus 0 species 0 genus Paraburkholderia 1 12 1822464 4374 18 948107 1 210 0 species Paraburkholderia sprentiae species 0 Paraburkholderia phenoliruptrix 1 252970 150 2615204 1 371 no rank 0 1 1926494 371 species 0 Paraburkholderia sp. SOS3 2026199 1 164 Paraburkholderia aromaticivorans species 0 148447 1 306 species 0 Paraburkholderia phymatum 322 1 36873 0 species Paraburkholderia xenovorans 0 species Paraburkholderia phytofirmans 1396 1 261302 Paraburkholderia terrae 0 species 199 311230 1 0 species Paraburkholderia fungorum 134537 1 168 300 169430 1 Paraburkholderia hospita species 0 0 species Paraburkholderia caribensis 1 75105 770 0 genus 233 1827195 1 1 758793 233 Burkholderia sp. RPE64 species 0 288 30433 41 32008 1 Burkholderia genus 0 288 1 41899 species 0 Burkholderia plantarii 111527 7 14380 0 species group 469 342113 1 Burkholderia oklahomensis 0 species 432 1637831 1 0 species Burkholderia sp. MSMB617WGS Burkholderia pseudomallei 0 species 1 28450 8755 1637837 1 509 Burkholderia sp. MSMB0266 species 0 Burkholderia mallei species 0 2902 13373 1 57975 1 757 Burkholderia thailandensis species 0 1 1637841 556 Burkholderia sp. MSMB0852 species 0 19 87882 11816 species group 0 60552 1 377 0 species Burkholderia vietnamiensis 351 1 87883 Burkholderia multivorans 0 species 131 488732 1 species 0 Burkholderia diffusa 199 1503054 1 species 0 Burkholderia stagnalis 0 species Burkholderia dolosa 180 152500 1 1 292 1004 Burkholderia cepacia species 0 1 488446 1175 0 species Burkholderia latens 1 488447 4333 species 0 Burkholderia contaminans [Pseudomonas] mesoacidophila species 0 131 265293 1 0 species Burkholderia territorii 136 1503055 1 0 species Burkholderia seminalis 488731 1 647 Burkholderia pseudomultivorans species 0 131 1207504 1 731 482957 1 species 0 Burkholderia lata 300 152480 1 species 0 Burkholderia ambifaria 1 95485 318 0 species Burkholderia stabilis 488729 1 159 Burkholderia metallica 0 species 140 60550 1 Burkholderia pyrrocinia species 0 species 0 Burkholderia ubonensis 101571 1 558 species 0 Burkholderia cenocepacia 1 95486 815 2255 11 2613784 0 no rank 92 1795874 1 Burkholderia sp. PAMC 28687 0 species 253 1 1678678 Burkholderia sp. HB1 species 0 Burkholderia sp. Bp7605 species 0 1 1740163 123 Burkholderia sp. CCGE1001 0 species 187 1 640510 0 species Burkholderia sp. PAMC 26561 1795043 1 122 species 0 Burkholderia sp. YI23 1 1097668 372 Burkholderia sp. CCGE1003 species 0 640512 1 329 259 1740162 1 0 species Burkholderia sp. Bp5365 1 758796 177 0 species Burkholderia sp. RPE67 245 1468409 1 Burkholderia sp. 2002721687 species 0 Burkholderia sp. KJ006 0 species 1 416344 96 384 1 28095 Burkholderia gladioli 0 species species 0 Burkholderia glumae 1 337 1022 14 7364 41 506 1 Alcaligenaceae 0 family genus 0 121 1 1472344 Basilea psittacipulmonis 0 species 1472345 1 121 3 79 359336 2 1 Castellaniella genus 0 76 75697 1 Castellaniella defragrans 0 species genus 0 114 1100891 1 species 0 Paenalcaligenes hominis 1 643674 114 Bordetella genus 0 43 2423 17 517 1 Bordetella avium 0 species 94 521 1 123899 1 107 species 0 Bordetella trematum Bordetella bronchiseptica species 0 280 518 1 Bordetella pseudohinzii species 0 134 1331258 1 134 35814 1 Bordetella holmesii species 0 species 0 Bordetella genomosp. 6 463024 1 136 1 463040 137 Bordetella genomosp. 13 0 species 302 520 1 0 species Bordetella pertussis 91 1 2630031 0 no rank 1 1697043 91 Bordetella sp. H567 0 species 1 1416803 105 Bordetella genomosp. 9 species 0 0 species Bordetella bronchialis 463025 1 222 Bordetella genomosp. 8 0 species 1416806 1 140 Bordetella parapertussis 0 species 177 519 1 98 1 94624 species 0 Bordetella petrii 463014 1 129 Bordetella flabilis species 0 species 0 Bordetella hinzii 94 103855 1 17 1544 222 6 1 Achromobacter genus 0 324 1 32002 Achromobacter denitrificans species 0 586 85698 1 Achromobacter xylosoxidans species 0 Achromobacter insolitus species 0 217204 1 147 299 1 217203 Achromobacter spanius species 0 2626865 1 171 no rank 0 171 1 1758194 0 species Achromobacter sp. AONIH1 genus 0 2 29574 358 29575 1 183 0 species Taylorella equigenitalis 175 84590 1 species 0 Taylorella asinigenitalis genus 0 Oligella 1 90243 2 98 3 0 species Oligella urethralis 90245 1 95 274 2 1 3 290425 genus 0 Advenella species 0 Advenella mimigardefordensis 302406 1 208 64 310575 1 Advenella kashmirensis species 0 Orrella genus 0 3 136 1921582 2 1 species 0 Orrella dioscoreae 1851544 1 133 Pusillimonas genus 0 2 305976 1 3 111 108 1 2640016 no rank 0 1 1007105 108 Pusillimonas sp. T7-7 species 0 2092 9 1 2 507 genus 0 Alcaligenes Alcaligenes faecalis 0 species 2083 511 1 no rank 0 2 80841 130 species 0 Burkholderiales bacterium GJ-E10 1469502 1 69 61 1 1834205 Burkholderiales bacterium YL45 species 0 no rank 0 17 224471 3164 1 32012 2 155 1 0 genus Thiomonas species 0 Thiomonas intermedia 154 926 1 762 1 1 2 93681 genus 0 Roseateles 0 species Roseateles depolymerans 76731 1 761 1 413882 522 species 0 [Polyangium] brachysporum genus 0 Mitsuaria 371 2 1 2 65047 no rank 0 369 2648776 1 1658665 1 369 Mitsuaria sp. 7 species 0 659 5 1 318147 2 genus 0 Paucibacter no rank 0 654 1 2642959 species 0 Paucibacter sp. KCTC 42545 1 1768242 654 Leptothrix 0 genus 88 2 1 2 187 185 1 34029 species 0 Leptothrix cholodnii 1 316612 2 180 6 0 genus Methylibium species 0 Methylibium petroleiphilum 174 105560 1 28067 2 1 6 167 Rubrivivax 0 genus species 0 Rubrivivax gelatinosus 161 1 28068 0 genus Rhizobacter 1 212743 2 161 1 160 1 946333 species 0 Rhizobacter gummiphilus family 0 Comamonadaceae 1 80864 54 15691 61 5 237 3 665874 1 Limnohabitans genus 0 2 2626134 232 no rank 0 120 1678129 1 0 species Limnohabitans sp. 103DPR2 Limnohabitans sp. 63ED37-2 0 species 112 1 1678128 1 1436289 207 genus 0 species 0 Candidatus Symbiobacter mobilis 207 1436290 1 Simplicispira 0 genus 352450 2 1 2 144 0 species Simplicispira sp. SC1-8 1 2109915 142 3094 8 1 3 52972 0 genus Polaromonas 0 species Polaromonas naphthalenivorans 216465 1 1365 1721 2638319 1 0 no rank 296591 1 1721 Polaromonas sp. JS666 species 0 2848 14 1 34072 5 genus 0 Variovorax Variovorax paradoxus 0 species 34073 1 1987 208 1 436515 Variovorax boronicumulans species 0 0 no rank 663243 2 639 Variovorax sp. PAMC 28711 species 0 1795631 1 351 288 1 2126319 Variovorax sp. PMC12 species 0 Comamonas genus 0 4 283 1 1 1409 1082851 1 438 species 0 Comamonas serinivorans 302 285 1 Comamonas testosteroni 0 species 668 1 225992 0 species Comamonas kerstersii Melaminivora 0 genus 2 1649468 1 1 132 1 2641902 131 no rank 0 2109913 1 131 Melaminivora sp. SC2-9 0 species 14 1553 9 12916 1 Acidovorax 0 genus Acidovorax sp. NA3 0 species 113 1 553814 183 721785 1 species 0 Acidovorax ebreus 281 1 80867 0 species Acidovorax avenae 1 80869 165 species 0 Acidovorax citrulli no rank 0 797 2684926 4 Acidovorax sp. JS42 0 species 88 232721 1 399 1 1858609 Acidovorax sp. T1 species 0 species 0 Acidovorax sp. RAC01 1842533 1 162 148 358220 1 species 0 Acidovorax sp. KKS102 1650 9 1 5 80865 genus 0 Delftia species 0 Delftia acidovorans 278 1 80866 299 1 180282 Delftia tsuruhatensis species 0 2613839 2 1064 0 no rank 742013 1 721 Delftia sp. Cs1-4 species 0 343 1 1920191 Delftia sp. HK171 0 species 219 2 2490452 genus 0 species 0 Comamonadaceae bacterium B1 119 1 1458426 Comamonadaceae bacterium A1 species 0 1458425 1 100 174951 1 288 genus 0 species 0 Ramlibacter tataouinensis 288 1 94132 0 genus 4 28065 760 1 1484693 96 species 0 Rhodoferax saidenbachensis species 0 Rhodoferax koreense 1842727 1 331 0 species Rhodoferax antarcticus 1 81479 211 122 192843 1 Rhodoferax ferrireducens species 0 0 genus 1830 1 364316 364317 1 1830 Verminephrobacter eiseniae 0 species 2 238749 1 1 171 Diaphorobacter 0 genus 0 species Diaphorobacter polyhydroxybutyrativorans 1546149 1 170 genus 0 Alicycliphilus 183 3 1 201096 2 Alicycliphilus denitrificans species 0 179636 1 180 4 47420 1 3 595 Hydrogenophaga 0 genus 0 no rank 2610897 2 277 185 795665 1 species 0 Hydrogenophaga sp. PBC Hydrogenophaga sp. RAC07 species 0 1842537 1 92 Hydrogenophaga crassostreae species 0 315 1 1763535 82 1 2678886 genus 0 1 2116657 82 Melaminivora sp. SC2-7 0 species 228 219181 2 0 genus 2109914 1 135 Ottowia sp. KADR8-3 species 0 2645081 1 93 no rank 0 0 species Ottowia sp. oral taxon 894 93 1 1658672 Oxalobacteraceae 0 family 28 75682 1 14 6895 4 1101 7 29580 1 Janthinobacterium 0 genus 0 no rank 2610881 4 714 1938606 1 196 Janthinobacterium sp. LM6 species 0 64 1 375286 species 0 Janthinobacterium sp. Marseille 0 species Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 1 243 1 1236179 211 Janthinobacterium sp. B9-8 0 species 155 1 55508 Janthinobacterium agaricidamnosum species 0 species 0 Janthinobacterium svalbardensis 368607 1 228 genus 0 Herbaspirillum 3207 10 1 6 963 species 0 Herbaspirillum seropedicae 2153 1 964 92645 1 197 0 species Herbaspirillum frisingense 0 no rank 218 1 2624150 218 2025949 1 species 0 Herbaspirillum sp. meg3 1 80842 205 Herbaspirillum rubrisubalbicans species 0 Herbaspirillum hiltneri species 0 341045 1 424 Herminiimonas 0 genus 303379 3 1 1 210 126 1809410 1 0 species Herminiimonas arsenitoxidans 1 204773 83 Herminiimonas arsenicoxydans 0 species 0 genus Massilia 1 6 149698 994 14 species 0 Massilia sp. ZMN-3 1 2072590 170 2045208 1 177 Massilia sp. B2 species 0 2 2609279 404 no rank 0 Massilia sp. NR 4-1 species 0 187 1678028 1 1707785 1 217 Massilia sp. WG5 species 0 species 0 Massilia putida 229 1 1141883 1263 12 1 4 202907 0 genus Collimonas 0 species Collimonas pratensis 209 1 279113 Collimonas fungivorans species 0 158 1 158899 Collimonas arenae 0 species 884 1 279058 1 846 106 0 genus Oxalobacter formigenes 0 species 106 1 847 no rank 0 243 33809 2 0 species Betaproteobacteria bacterium GR16-43 110 1 1904640 133 543913 1 beta proteobacterium CB species 0 order 0 Neisseriales 3580 16 1 206351 34 0 family Neisseriaceae 2199 11 1 481 21 no rank 0 1 421605 135 1 2052837 135 Neisseriaceae bacterium DSM 100970 species 0 genus 0 280 1193515 1 species 0 Snodgrassella alvi 280 1 1196083 genus 0 1 71 130 72 1 130 species 0 Simonsiella muelleri Neisseria 0 genus 482 12 1 8 1235 1 28091 88 Neisseria weaveri 0 species 0 species Neisseria elongata 495 1 62 486 1 66 Neisseria lactamica species 0 176 2 2623750 0 no rank Neisseria sp. KEM232 species 0 87 1 655307 1 1853276 89 species 0 Neisseria sp. 10022 Neisseria gonorrhoeae species 0 169 485 1 449 1 487 Neisseria meningitidis 0 species 50 488 1 0 species Neisseria mucosa 77 1 326523 Neisseria zoodegmatis 0 species 490 1 36 species 0 Neisseria sicca Neisseria sp. 10023 species 0 54 1 1853278 genus 0 Vitreoscilla 1 3 59 320 5 Vitreoscilla filiformis species 0 90 1 63 0 no rank 225 1 2627922 Vitreoscilla sp. C1 0 species 96942 1 225 0 genus Eikenella 88 1 1 538 2 Eikenella corrodens species 0 539 1 87 1 1499392 12 1365 15 family 0 Chromobacteriaceae Jeongeupia 0 genus 2 885864 1 12 152 2619593 1 140 0 no rank Jeongeupia sp. USM3 0 species 140 1906741 1 genus 0 Laribacter 1 168470 2 151 8 0 species Laribacter hongkongensis 1 168471 143 no rank 0 792 90153 4 genus 0 Chromobacterium 792 4 1 4 535 369 1108595 1 Chromobacterium vaccinii species 0 no rank 0 1 2641838 214 2059672 1 214 species 0 Chromobacterium sp. ATCC 53434 species 0 Chromobacterium violaceum 1 536 205 0 genus Aquaspirillum 1 2 187 124 2 2620219 1 122 0 no rank Aquaspirillum sp. LM1 0 species 122 1 1938604 131 1 568394 genus 0 no rank 0 1 2642558 131 Pseudogulbenkiania sp. NH8B 0 species 131 1 748280 class 0 7 1553900 813 0 order Bacteriovoracales 414 3 1 3 2024979 263369 1 127 0 family genus 0 127 1 146784 1 960 127 species 0 Bacteriovorax stolpii 0 family 284 1 1652132 genus 0 284 1 1652133 Halobacteriovorax marinus 0 species 284 97084 1 1 4 213481 399 3 order 0 Bdellovibrionales 3 213483 1 4 396 Bdellovibrionaceae family 0 genus 0 392 958 2 Bdellovibrio exovorus 0 species 83 453816 1 Bdellovibrio bacteriovorus species 0 1 959 309 28211 520 1 92 167367 Alphaproteobacteria class 0 0 order Parvularculales 194 3 1 255473 3 255474 2 191 family 0 genus 0 Parvularcula 191 1 1 2 208215 Parvularcula bermudensis species 0 208216 1 190 197 1 1 1191478 2 0 order Magnetococcales 0 family 196 1191479 1 1 162171 196 0 genus Magnetococcus marinus species 0 1124597 1 196 Caulobacterales 0 order 14 1887 18 204458 1 11 1873 17 76892 1 Caulobacteraceae 0 family 42 1 76890 genus 0 species 0 Asticcacaulis excentricus 42 1 78587 Brevundimonas 0 genus 41275 7 1 17 894 81 1 41276 Brevundimonas vesicularis 0 species Brevundimonas naejangsanensis 0 species 588932 1 46 358 74313 1 Brevundimonas subvibrioides 0 species no rank 0 2622653 3 392 65 1827469 1 species 0 Brevundimonas sp. GW460-12-10-14-LB2 species 0 Brevundimonas sp. LM2 1938605 1 234 Brevundimonas sp. DS20 species 0 1532555 1 93 1 75 6 704 11 genus 0 Caulobacter species 0 Caulobacter henricii 139 1 69395 no rank 0 1 2648921 114 Caulobacter sp. K31 0 species 1 366602 114 88688 1 107 0 species Caulobacter segnis 0 species Caulobacter vibrioides 224 1 155892 0 species Caulobacter mirabilis 109 69666 1 0 no rank 1 81440 82 species 0 Caulobacteraceae bacterium OTSz_A_272 1 1759059 82 140 1 20 0 genus species 0 Phenylobacterium zucineum 284016 1 140 0 order Rickettsiales 3783 8 1 766 55 1532 3 1 28 775 family 0 Rickettsiaceae 1 133 2115980 2 1 Candidatus Phycorickettsia 0 genus 2115978 1 132 species 0 Candidatus Phycorickettsia trachydisci 25 33988 1396 0 tribe genus 0 Orientia 291 4 1 69474 2 Orientia tsutsugamushi 0 species 784 1 287 1 780 23 1105 95 genus 0 Rickettsia 0 no rank 114295 1 89 species 0 Rickettsia endosymbiont of Bemisia tabaci 89 337479 1 species group 0 17 114277 501 43 1 109232 species 0 Rickettsia monacensis 35792 1 5 0 species Rickettsia parkeri 85 1 42862 Rickettsia felis species 0 10 35788 1 species 0 Rickettsia africae species 0 Rickettsia rickettsii 13 1 783 0 species Rickettsia rhipicephali 1 33992 44 0 species Rickettsia slovaca 6 35794 1 1 33989 37 Rickettsia amblyommatis 0 species species 0 Rickettsia philipii 19 1 1105106 35 1 47589 species 0 Rickettsia peacockii Rickettsia conorii 0 species 1 781 9 0 species Rickettsia australis 76 787 1 0 species Rickettsia montanensis 18 1 33991 Rickettsia japonica 0 species 35790 1 5 35 35791 1 Rickettsia massiliae 0 species species 0 Rickettsia heilongjiangensis 1 226665 4 0 species Rickettsia akari 1 786 57 114292 2 209 species group 0 104 782 1 Rickettsia prowazekii 0 species 105 785 1 Rickettsia typhi species 0 211 2 1129742 species group 0 Rickettsia bellii 0 species 144 33990 1 67 788 1 Rickettsia canadensis 0 species 0 no rank 1699067 1 240 1 1528098 240 Rickettsiales bacterium Ac37b species 0 family 0 106 1328881 2 1 2 411566 106 1 0 genus Candidatus Midichloria 1 234827 105 Candidatus Midichloria mitochondrii species 0 Anaplasmataceae family 0 1 1897 23 942 1 12 728 943 6 1 Ehrlichia genus 0 106178 4 561 0 species group 109 945 1 0 species Ehrlichia chaffeensis 0 species Ehrlichia muris 35795 1 148 0 species Ehrlichia canis 1 944 139 0 species Ehrlichia ruminantium 165 1 779 0 no rank 106181 1 155 Ehrlichia sp. HF 0 species 155 1 391036 952 8 858 tribe 0 8 953 1 26 858 Wolbachia 0 genus no rank 0 7 2640676 832 76 1 77551 species 0 Wolbachia endosymbiont of Onchocerca volvulus 66084 1 87 Wolbachia sp. wRi species 0 207 77038 1 Wolbachia endosymbiont of Drosophila simulans 0 species 0 species Wolbachia endosymbiont of Drosophila melanogaster 73 163164 1 1 246273 93 species 0 Wolbachia endosymbiont of Cimex lectularius 80849 1 220 Wolbachia endosymbiont of Brugia malayi species 0 76 1 100901 0 species Wolbachia endosymbiont of Onchocerca ochengi 4 768 1 5 193 Anaplasma genus 0 Anaplasma marginale species 0 770 1 35 1 769 39 Anaplasma centrale species 0 species group 0 114 1 106179 species 0 Anaplasma phagocytophilum 1 948 114 Neorickettsia genus 0 1 117 33993 4 1 Neorickettsia helminthoeca species 0 1 33994 47 species 0 Neorickettsia risticii 21 1 950 species 0 Neorickettsia sennetsu 48 1 951 0 order 3 1921002 331 2100208 1 94 0 family genus 0 1509243 1 94 94 1509244 1 species 0 Candidatus Nucleicultrix amoebiphila 0 family 112 1 1777752 1521255 1 112 genus 0 112 1 91604 Candidatus Paracaedibacter acanthamoebae species 0 0 family 44746 1 125 0 no rank 204454 1 125 endosymbiont of Acanthamoeba sp. UWC8 0 species 125 86106 1 123 2800059 2 order 0 0 family 123 2 2800061 123 2 1 2 74317 0 genus Maricaulis 74318 1 121 Maricaulis maris 0 species 28447 115 1 204441 56 0 order Rhodospirillales family 0 Rhodospirillaceae 22868 31 1 41295 24 0 genus 1 1263978 18439 18439 1 1263979 Candidatus Endolissoclinum faulkneri 0 species 65 1 1804663 0 genus Haematospirillum jordaniae species 0 65 1 1549855 1 122 2 171436 1 Tistrella genus 0 0 species Tistrella mobilis 1 171437 121 genus 0 1081 2 512 Rhodospirillum centenum 0 species 34018 1 385 127 1085 1 species 0 Rhodospirillum rubrum 1612157 1 109 0 genus Pararhodospirillum photometricum 0 species 1 1084 109 1182780 1 90 0 genus 90 1 2685734 0 no rank Magnetospira sp. QH-2 0 species 1288970 1 90 0 genus 157 1543705 1 1 28077 157 Nitrospirillum amazonense species 0 genus 0 1543704 1 108 Niveispirillum cyanobacteriorum 0 species 108 1 1612173 0 genus Azospirillum 1568 25 1 5 191 1 193 386 species 0 Azospirillum lipoferum 1 1226968 65 Azospirillum humicireducens 0 species species 0 Azospirillum thiophilum 1 528244 780 312 1 192 Azospirillum brasilense species 0 Thalassospira 0 genus 5 526 3 168934 1 Thalassospira xiamenensis species 0 310 220697 1 2048283 1 211 species 0 Thalassospira sp. CSC3H3 6 1141 13134 5 1 Magnetospirillum genus 0 0 no rank 375 2 2617991 Magnetospirillum sp. XM-1 species 0 1 1663591 198 1 1639348 177 species 0 Magnetospirillum sp. ME-1 1 55518 183 species 0 Magnetospirillum gryphiswaldense 577 84159 1 0 species Magnetospirillum magneticum 22 5464 31 433 1 Acetobacteraceae family 0 3 852 364409 2 1 Granulibacter 0 genus 849 364410 1 Granulibacter bethesdensis 0 species 0 genus Acidiphilium 169 3 1 3 522 Acidiphilium multivorum 0 species 62140 1 88 78 524 1 Acidiphilium cryptum species 0 1 153497 72 genus 0 species 0 Kozakia baliensis 72 1 153496 70 91914 1 genus 0 91915 1 70 0 species Asaia bogorensis 5 1434011 1 10 1232 Komagataeibacter genus 0 0 species Komagataeibacter xylinus 1 28448 136 59 33995 1 Komagataeibacter europaeus species 0 490 1 1177712 Komagataeibacter medellinensis species 0 0 species Komagataeibacter nataicola 537 1 265960 3 125216 1 4 911 Roseomonas 0 genus 1 2617492 770 0 no rank 770 2018065 1 Roseomonas sp. FDAARGOS_362 0 species 1 257708 137 Roseomonas gilardii species 0 genus 0 Acetobacter 1663 3 1 434 8 Acetobacter tropicalis 0 species 422 104102 1 1 1633874 101 Acetobacter oryzifermentans 0 species subgenus 0 67 1 151157 Acetobacter aceti species 0 435 1 67 species 0 Acetobacter pomorum 65959 1 113 species 0 Acetobacter pasteurianus 438 1 483 261 446692 1 0 species Acetobacter senegalensis 1076596 1 213 0 species Acetobacter persici 88 1 1602345 0 genus 1510841 1 88 Parasaccharibacter apium 0 species 123 89583 1 0 genus 1 33996 123 Gluconacetobacter diazotrophicus species 0 1 2 320496 45 1 genus 0 Neoasaia 320497 1 44 Neoasaia chiangmaiensis 0 species 217 3 1 3 441 0 genus Gluconobacter 158 442 1 Gluconobacter oxydans species 0 Gluconobacter albidus 0 species 1 318683 56 204455 84 1 63 37039 Rhodobacterales order 0 36976 193 1 31989 83 family 0 Rhodobacteraceae 286 1097466 1 0 genus Defluviimonas alba species 0 286 1335048 1 Dinoroseobacter genus 0 1 282 309512 2 1 1 215813 281 Dinoroseobacter shibae 0 species Antarctobacter 0 genus 2 74032 1 7 465 species 0 Antarctobacter heliothermus 74033 1 458 Paracoccus genus 0 21 1900 265 9 1 species 0 Paracoccus aminovorans 34004 1 174 0 species Paracoccus contaminans 1945662 1 158 Paracoccus zhejiangensis 0 species 1077935 1 194 Paracoccus denitrificans species 0 266 1 218 0 no rank 357 246570 1 357 1 1529068 Paracoccus sp. BM15 species 0 Paracoccus aminophilus 0 species 209 1 34003 147645 1 318 Paracoccus yeei 0 species species 0 Paracoccus sp. CBA4604 251 2065379 1 579 2211641 1 0 genus 579 1 245188 Loktanella vestfoldensis species 0 1649279 1 374 0 genus 374 1 379347 Ruegeria mobilis 0 species genus 0 310 1 360528 310 1 1250539 0 species Pelagibaca abyssi genus 0 Sulfitobacter 1225 2 1 3 60136 Sulfitobacter pseudonitzschiae species 0 1 1402135 749 196795 1 474 no rank 0 1917485 1 474 Sulfitobacter sp. AM1-D1 species 0 0 genus 343 1759396 1 0 no rank 1 2622455 343 343 1 1920883 Marivivens sp. JLT3646 0 species genus 0 Rhodobaca 325 1 1 119541 2 324 441209 1 0 species Rhodobaca barguzinensis 0 genus Roseobacter 1 2433 3 1284 11 42443 1 700 0 species Roseobacter litoralis Roseobacter denitrificans 0 species 573 1 2434 genus 0 Octadecabacter 1 53945 4 6658 33 species 0 Octadecabacter antarcticus 1 1217908 3322 Octadecabacter arcticus species 0 2822 53946 1 species 0 Octadecabacter temperatus 481 1458307 1 1239 9 1 4 34008 genus 0 Rhodovulum 0 no rank 556 2631432 2 1 1564506 224 species 0 Rhodovulum sp. P5 Rhodovulum sp. MB263 0 species 332 1 308754 674 35806 1 Rhodovulum sulfidophilum 0 species 1238 1579315 1 0 genus 0 species Halocynthiibacter arcticus 1579316 1 1238 0 genus Pannonibacter 1 227873 2 115 1 0 species Pannonibacter phragmitetus 114 1 121719 1 92944 3 441 3 0 genus Ketogulonicigenium species 0 Ketogulonicigenium robustum 92947 1 218 0 species Ketogulonicigenium vulgare 1 92945 220 0 genus 368 299261 1 Tateyamaria omphalii species 0 368 1 299262 911 159345 1 0 genus species 0 Roseibacterium elongatum 159346 1 911 Leisingera 0 genus 191028 2 1 2 421 Leisingera methylohalidivorans species 0 133924 1 419 genus 0 Rhodobacter 1042 9 1 5 1060 2 196779 371 no rank 0 142 2033869 1 Rhodobacter sp. CZR27 0 species 1850250 1 229 Rhodobacter sp. LPB0142 0 species Rhodobacter sphaeroides 0 species 1 1063 489 173 1061 1 0 species Rhodobacter capsulatus 2112 8 1 5 875170 0 genus Celeribacter Celeribacter manganoxidans 0 species 1 1411902 433 488 1 1397108 0 species Celeribacter marinus 0 species Celeribacter ethanolicus 1 1758178 200 1 1208324 983 0 species Celeribacter indicus 0 genus Labrenzia 1 478070 4 1492 11 2 2648686 1111 no rank 0 Labrenzia sp. CP4 species 0 1 1674922 935 Labrenzia sp. VG12 0 species 1 2021862 176 0 species Labrenzia aggregata 1 187304 370 0 genus 1 188905 753 753 1 2645469 0 no rank 290400 1 753 Jannaschia sp. CCS1 species 0 0 genus Sagittula 1 58842 2 259 2 0 no rank 2624628 1 257 species 0 Sagittula sp. P11 257 1 2009329 genus 0 396 1609958 1 2643318 1 396 0 no rank Confluentimicrobium sp. EMB200-NS6 species 0 1 1609966 396 Thioclava 0 genus 4 192 2 285107 1 188 1 1915078 0 species Thioclava nitratireducens genus 0 453 1 74030 453 1 215743 species 0 Roseovarius mucosus Marinovum genus 0 367771 2 1 1 451 450 1 42444 Marinovum algicola species 0 772 11 1 97050 3 0 genus Ruegeria 376 1 89184 Ruegeria pomeroyi species 0 no rank 0 2625375 1 385 292414 1 385 Ruegeria sp. TM1040 species 0 Phaeobacter 0 genus 302485 5 1 70 4336 Phaeobacter piscinae species 0 833 1 1580596 2165 1 221822 species 0 Phaeobacter inhibens 427 1 1844006 Phaeobacter porticola 0 species 0 species Phaeobacter gallaeciensis 60890 1 841 Thalassococcus 0 genus 1 436357 1 590 263377 2 0 genus 1 1229727 222 Thiobacimonas profunda species 0 368 2640570 1 no rank 0 1792508 1 368 species 0 Yangia sp. CCB-MM3 2 1284657 1 1 4671 Planktomarina genus 0 Planktomarina temperata species 0 1 1284658 4670 499 2 58840 no rank 0 species 0 Rhodobacteraceae bacterium QY30 165 1 2033435 1904441 1 334 Rhodobacteraceae bacterium species 0 2800060 6 427 0 order family 0 Hyphomonadaceae 1 69657 6 427 5 1 3 85 182 4 genus 0 Hyphomonas 0 no rank 1 2630699 91 1906738 1 91 Hyphomonas sp. Mor2 species 0 species 0 Hyphomonas neptunium 87 1 81032 2 240 2723 2 1 Hirschia genus 0 238 1 2724 Hirschia baltica 0 species 204457 79 1 26 8099 Sphingomonadales order 0 Sphingomonadaceae family 0 41297 56 1 22 6629 261 1 541 0 genus 542 1 261 species 0 Zymomonas mobilis genus 0 2709685 1 82 Sphingorhabdus flavimaris 0 species 82 1 266812 genus 0 1 2685927 64 64 1 1921510 species 0 Sphingomonas sp. JJ-A5 genus 0 1 150203 94 no rank 0 94 2626550 1 94 1842535 1 Blastomonas sp. RAC04 species 0 1 2 72173 84 7 0 genus Citromicrobium 1 2630544 77 0 no rank 77 1 1634516 0 species Citromicrobium sp. JL477 Sphingopyxis genus 0 10 165697 1 4 1044 1 33052 78 species 0 Sphingopyxis terrae Sphingopyxis fribergensis species 0 1515612 1 172 Sphingopyxis granuli 0 species 75 1 267128 Sphingopyxis alaskensis species 0 1 117207 75 4 2614943 503 0 no rank Sphingopyxis sp. 113P3 species 0 1 292913 81 1913578 1 198 0 species Sphingopyxis sp. LPB0140 1 1866325 90 Sphingopyxis sp. MG species 0 1 1357916 134 Sphingopyxis sp. QXT-31 0 species species 0 Sphingopyxis macrogoltabida 33050 1 137 181 6 1 3 1434046 0 genus Sphingorhabdus 2 2614947 175 0 no rank 1 2077182 90 Sphingorhabdus sp. YGSMI21 0 species 1 1806885 85 0 species Sphingorhabdus sp. M41 15 165695 1 19 1268 Sphingobium 0 genus Sphingobium indicum species 0 332055 1 71 no rank 0 6 2611147 457 0 species Sphingobium sp. EP60837 1855519 1 47 Sphingobium sp. MI1205 species 0 1 407020 50 105 1315974 1 Sphingobium sp. TKS 0 species 75 1843368 1 0 species Sphingobium sp. RAC03 1 484429 90 species 0 Sphingobium sp. YBL2 90 1 627192 species 0 Sphingobium sp. SYK-6 13690 1 292 0 species Sphingobium yanoikuyae Sphingobium hydrophobicum species 0 1673076 1 103 Sphingobium baderi species 0 61 1332080 1 81 332056 1 species 0 Sphingobium japonicum species 0 Sphingobium herbicidovorans 76947 1 53 63 1 46429 species 0 Sphingobium chlorophenolicum Sphingobium cloacae species 0 68 1 120107 5 165696 1 9 438 Novosphingobium genus 0 117 1 205844 Novosphingobium pentaromativorans 0 species 130 1 158500 0 species Novosphingobium resinovorum species 0 Novosphingobium aromaticivorans 84 1 48935 1 2644732 98 0 no rank 0 species Novosphingobium sp. PP1Y 98 1 702113 2964 21 1 13687 15 0 genus Sphingomonas Sphingomonas sanxanigenens 0 species 397260 1 270 0 species Sphingomonas wittichii 289 151 1 160791 2 Sphingomonas sp. DC-6 0 strain 138 1 1283312 109 1560345 1 Sphingomonas panacis 0 species 91 93064 1 species 0 Sphingomonas koreensis no rank 0 1848 196159 6 Sphingomonas sp. Cra20 species 0 1327635 1 96 1 1030157 88 0 species Sphingomonas sp. KC8 Sphingomonas sp. MM-1 species 0 745310 1 109 91 1 1938607 0 species Sphingomonas sp. LM7 Sphingomonas sp. NIC1 species 0 75 1961362 1 Sphingomonas sp. LK11 0 species 1390395 1 1389 152682 1 109 species 0 Sphingomonas melonis 126 1609977 1 0 species Sphingomonas hengshuiensis Sphingomonas taxi 0 species 101 1549858 1 0 genus 1649486 1 127 1 1850238 127 0 species Rhizorhabdus dicambivorans 0 family Erythrobacteraceae 1444 22 1 22 335929 2800682 1 106 0 genus Altererythrobacter namhicola 0 species 106 645517 1 2800685 1 54 0 genus 543877 1 54 Altererythrobacter marensis 0 species genus 0 2 1855416 115 0 species Erythrobacter seohaensis 1 266951 46 Erythrobacter flavus species 0 69 192812 1 2 2800681 252 genus 0 1 1648404 129 species 0 Erythrobacter atlanticus Erythrobacter gangjinensis 0 species 123 502682 1 123 2800686 2 genus 0 species 0 Altererythrobacter mangrovi 67 1982042 1 1 692370 56 Altererythrobacter dongtanensis 0 species 361177 4 1 20 234 Altererythrobacter genus 0 51 1 476157 Altererythrobacter ishigakiensis species 0 species 0 Altererythrobacter atlanticus 80 1267766 1 Altererythrobacter epoxidivorans 0 species 83 361183 1 1295327 3 1 8 147 Croceicoccus 0 genus 0 species Croceicoccus marinus 1 450378 93 Croceicoccus naphthovorans 0 species 1348774 1 46 391 2800788 6 no rank 0 Porphyrobacter genus 0 3 1111 1 5 155 2 2683265 150 0 no rank Porphyrobacter sp. LM 6 species 0 62 1896196 1 Porphyrobacter HT-58-2 species 0 88 1 2023229 Erythrobacter 0 genus 10 236 1041 3 1 species 0 Erythrobacter litoralis 1 39960 153 0 species Porphyrobacter neustonensis 73 1 1112 1 54526 9 59021 4 order 0 Pelagibacterales 6 1655514 1 3 58199 Pelagibacteraceae family 0 0 no rank 5038 2 1655516 0 species alpha proteobacterium HIMB5 859653 1 4706 alpha proteobacterium HIMB59 0 species 332 1 744985 genus 0 Candidatus Pelagibacter 53158 6 1 198251 3 0 no rank 2001 2647897 1 Candidatus Pelagibacter sp. IMCC9063 species 0 1 1002672 2001 198252 1 51151 Candidatus Pelagibacter ubique species 0 2 818 2 2045213 1 Candidatus Fonsibacter 0 genus 1925548 1 816 Candidatus Fonsibacter ubiquis species 0 0 no rank 834 82117 7 clade 0 62654 1 495 0 genus 767891 1 495 495 767892 1 Candidatus Puniceispirillum marinum species 0 132 6 1 2 991903 0 genus Polymorphum 1 991904 126 species 0 Polymorphum gilvum 1 2 1632780 128 1 0 genus Phreatobacter 127 1868589 1 Phreatobacter sp. S-12 species 0 79 1 1 2 213485 genus 0 Micavibrio 349221 1 78 0 species Micavibrio aeruginosavorus 1 356 195 26893 109 0 order Rhizobiales Phyllobacteriaceae 0 family 3 4483 69277 20 1 genus 0 Aminobacter 1 2 31988 172 2 0 species Aminobacter aminovorans 1 83263 170 2 274591 1 1 212 Hoeflea 0 genus 0 no rank 211 2614931 1 Hoeflea sp. IMCC20628 0 species 211 1620421 1 449972 2 1 1 104 Chelativorans 0 genus 1 2643807 103 0 no rank 103 1 266779 0 species Chelativorans sp. BNC1 Nitratireductor genus 0 5 100 2 245876 1 1 472175 95 Nitratireductor basaltis 0 species Phyllobacterium 0 genus 2 28100 1 2 114 species 0 Phyllobacterium zundukense 1867719 1 112 32 3778 9 68287 1 Mesorhizobium genus 0 39645 1 239 species 0 Mesorhizobium ciceri 169 2066070 1 0 species Mesorhizobium japonicum Mesorhizobium loti 0 species 695 381 1 Mesorhizobium australicum species 0 185 536018 1 0 species Mesorhizobium amorphae 1 71433 182 1670800 1 124 Mesorhizobium sp. B7 0 species 325217 1 1948 0 no rank species 0 Mesorhizobium sp. WSM1497 278153 1 1948 species 0 Mesorhizobium opportunistum 204 593909 1 family 0 366 5 31993 3 133 1 2 189 Methylocystis genus 0 92 1 655015 species 0 Methylocystis bryophila 95 1 2625913 0 no rank 187303 1 95 0 species Methylocystis sp. SC2 177 2 1 425 2 genus 0 Methylosinus 175 1 426 0 species Methylosinus trichosporium 2036754 3 268 0 family 268 2 1 3 28209 0 genus Chelatococcus 0 no rank 1 2638111 143 species 0 Chelatococcus sp. CO-6 143 1 1702325 species 0 Chelatococcus daeguensis 123 1 444444 Methylobacteriaceae 0 family 6 2409 15 119045 1 Methylobacterium genus 0 407 9 1 24 1322 121 1 334852 0 species Methylobacterium oryzae Methylobacterium aquaticum species 0 208 270351 1 1 31998 201 0 species Methylobacterium radiotolerans 485 3 2615210 0 no rank 1 426117 233 species 0 Methylobacterium sp. 4-46 1 925818 124 Methylobacterium sp. AMS5 species 0 1479019 1 128 species 0 Methylobacterium sp. C1 0 species Methylobacterium nodulans 1 114616 161 species 0 Methylobacterium phyllosphaerae 1 418223 122 genus 0 914 2282523 3 217 223967 1 Methylobacterium populi species 0 574 408 1 0 species Methylobacterium extorquens species 0 Methylobacterium zatmanii 1 29429 123 2 186650 1 1 167 Microvirga 0 genus 0 species Microvirga ossetica 166 1882682 1 1 5 335928 432 4 family 0 Xanthobacteraceae 1 6 2 104 1 0 genus Azorhizobium Azorhizobium caulinodans 0 species 103 1 7 119 152053 1 genus 0 Starkeya novella 0 species 1 921 119 205 279 1 0 genus 205 1 280 Xanthobacter autotrophicus species 0 3 400 255475 7 1 Aurantimonadaceae family 0 1 2 414371 131 3 0 genus Aureimonas 128 1 2615206 no rank 0 Aureimonas sp. AU20 species 0 1 1349819 128 Martelella 0 genus 293088 4 1 9 266 102 293089 1 species 0 Martelella mediterranea 80 2629616 1 no rank 0 0 species Martelella sp. AD-3 80 686597 1 species 0 Martelella endophytica 1486262 1 75 0 family 2617 772 17 2617 37 1 17 773 genus 0 Bartonella 0 species Bartonella clarridgeiae 1 56426 122 Bartonella australis species 0 129 388640 1 Bartonella henselae 0 species 38323 1 110 Bartonella apis 0 species 272 1686310 1 1 1318743 126 Bartonella ancashensis species 0 0 species Bartonella vinsonii 158 33047 1 1 774 145 Bartonella bacilliformis species 0 1 33045 167 0 species Bartonella grahamii 0 no rank 6 2645622 1073 160 1933910 1 Bartonella sp. A1379B species 0 515256 1 291 Bartonella sp. 1-1C 0 species species 0 Bartonella sp. JB63 154 1933907 1 species 0 Bartonella sp. Raccoon60 158 1933912 1 Bartonella sp. JB15 0 species 157 1933906 1 153 1933904 1 species 0 Bartonella sp. WD16.2 143 1 85701 Bartonella tribocorum 0 species 135 1 803 0 species Bartonella quintana 0 no rank 408 5 119042 104 1484898 1 0 genus Methyloceanibacter caenitepidi 0 species 104 1 1384459 Hartmannibacter 0 genus 2 1572860 1 3 195 0 species Hartmannibacter diazotrophicus 1482074 1 192 Pseudorhodoplanes 0 genus 1 109 2 1734920 1 Pseudorhodoplanes sinuspersici 0 species 108 1235591 1 family 0 Bradyrhizobiaceae 3921 11 1 25 41294 Bosea 0 genus 85413 5 1 7 475 0 species Bosea vaviloviae 1526658 1 130 338 3 2653178 0 no rank species 0 Bosea sp. RAC05 123 1 1842539 1 1792307 87 species 0 Bosea sp. PAMC 26642 Bosea sp. AS-1 species 0 128 1 2015316 0 genus Bradyrhizobium 1 11 374 2078 29 no rank 0 6 2631580 1043 1 114615 170 0 species Bradyrhizobium sp. ORS 278 Bradyrhizobium sp. SK17 species 0 198 1 2057741 1 288000 148 0 species Bradyrhizobium sp. BTAi1 118 1 1223566 Bradyrhizobium sp. CCGE-LA001 0 species Bradyrhizobium sp. 0 species 376 1 282 Bradyrhizobium sp. ORS 285 0 species 127 115808 1 Bradyrhizobium icense species 0 121 1 1274631 0 species Bradyrhizobium diazoefficiens 363 1 1355477 0 species Bradyrhizobium japonicum 375 1 379 143 1 44255 0 species Bradyrhizobium oligotrophicum 1649510 2 1 3 92 Variibacter genus 0 89 1333996 1 0 species Variibacter gotjawalensis 0 genus 1 40136 49 49 40137 1 Oligotropha carboxidovorans 0 species Nitrobacter 0 genus 3 911 1 5 187 100 1 912 Nitrobacter hamburgensis 0 species species 0 Nitrobacter winogradskyi 1 913 82 1 2 1073 1029 11 0 genus Rhodopseudomonas 1018 1076 1 Rhodopseudomonas palustris species 0 119043 2 100 family 0 Parvibaculum 0 genus 2 256616 1 1 100 99 1 256618 Parvibaculum lavamentivorans 0 species 0 family Hyphomicrobiaceae 1774 6 1 45401 18 1 119 59282 2 1 Blastochloris genus 0 1 1079 118 Blastochloris viridis 0 species Rhodomicrobium 0 genus 5 75 1068 2 1 70 1069 1 species 0 Rhodomicrobium vannielii 0 genus 1 29407 224 no rank 0 2619116 1 224 224 674703 1 Rhodoplanes sp. Z2-YC6860 species 0 0 genus Filomicrobium 70 2 1 2 119044 68 1 1608628 Candidatus Filomicrobium marinum 0 species Devosia genus 0 10 275 46913 4 1 196773 3 265 no rank 0 90 2083786 1 Devosia sp. I507 0 species 1643450 1 67 Devosia sp. H5989 0 species Devosia sp. A16 species 0 108 1 1736675 4 81 1 12 916 Hyphomicrobium genus 0 0 species Hyphomicrobium nitrativorans 91 1 1427356 species 0 Hyphomicrobium denitrificans 127 53399 1 0 no rank 686 1 2619925 717785 1 686 species 0 Hyphomicrobium sp. MC1 genus 0 Pelagibacterium 1 2 1082930 89 5 0 species Pelagibacterium halotolerans 1 531813 84 20 118882 1 7 1660 Brucellaceae family 0 949 4 1 5 528 0 genus Ochrobactrum Ochrobactrum sp. A44 0 species 1 271865 142 1 529 119 Ochrobactrum anthropi species 0 419475 1 291 species 0 Ochrobactrum pseudogrignonense 1 571256 393 species 0 Ochrobactrum pituitosum genus 0 Brucella 704 107 1 14 234 1 444163 9 species 0 Brucella microti Brucella suis species 0 237 29461 1 0 species Brucella vulpis 981386 1 32 species 0 Brucella ovis 1 236 10 24 36855 1 Brucella canis 0 species 35 1 120577 Brucella ceti 0 species 36 120576 1 0 species Brucella pinnipedialis species 0 Brucella abortus 1 235 55 26 29459 1 0 species Brucella melitensis 133 4 2632610 no rank 0 Brucella sp. 09RB8471 0 species 1 1149952 31 Brucella sp. 09RB8910 0 species 1844051 1 62 species 0 Brucella sp. 141012304 31 1 1885919 species 0 Brucella sp. 2002734562 1891098 1 9 45404 2 317 family 0 genus 0 88 120652 1 199596 1 88 Methylocella silvestris species 0 532 1 229 genus 0 Beijerinckia indica species 0 229 533 1 44 7629 82115 50 1 Rhizobiaceae 0 family 6 34019 1 1 580 Liberibacter 0 genus 81 34021 1 Candidatus Liberibacter asiaticus species 0 124 309868 1 0 species Candidatus Liberibacter americanus 556287 1 80 0 species Candidatus Liberibacter solanacearum 1 34020 146 species 0 Candidatus Liberibacter africanus species 0 Liberibacter crescens 148 1273132 1 no rank 0 1825 10 227292 7 28105 1 21 1591 Sinorhizobium genus 0 0 species group 328 663276 1 1 380 328 0 species Sinorhizobium fredii 1 382 420 Sinorhizobium meliloti species 0 268 2613772 2 no rank 0 94 794846 1 species 0 Sinorhizobium sp. CCBAU 05631 174 1842534 1 0 species Sinorhizobium sp. RAC02 194963 1 129 Sinorhizobium americanum species 0 Sinorhizobium medicae species 0 425 110321 1 3 106591 1 1 234 Ensifer genus 0 Ensifer adhaerens 0 species 1 106592 136 Ensifer sojae 0 species 97 716925 1 0 genus 191 323620 1 0 no rank 191 2643062 1 191 1 879274 Shinella sp. HZN7 0 species 4989 32 227290 0 no rank 1 379 23 3438 250 0 genus Rhizobium Rhizobium leguminosarum 0 species 384 1 888 species 0 Rhizobium etli 1 29449 411 Rhizobium phaseoli 0 species 418 1 396 17 2613769 1182 0 no rank 1125847 1 102 species 0 Rhizobium sp. NT-26 Rhizobium sp. 10195 0 species 113 2028343 1 1 1914541 63 Rhizobium sp. Y9 0 species 2020312 1 111 species 0 Rhizobium sp. CIAT894 109 1 1703969 Rhizobium sp. N324 species 0 1869170 1 96 0 species Rhizobium sp. S41 1 1301032 97 Rhizobium sp. IE4771 0 species 1 2048897 98 species 0 Rhizobium sp. NXC24 1703966 1 18 species 0 Rhizobium sp. N731 2020311 1 75 species 0 Rhizobium sp. Kim5 91 1 1571470 Rhizobium sp. ACO-34A species 0 species 0 Rhizobium sp. IRBG74 1 424182 96 Rhizobium sp. N741 species 0 1703967 1 1 1703962 1 1 0 species Rhizobium sp. N1341 1 2020313 27 species 0 Rhizobium sp. TAL182 species 0 Rhizobium sp. NXC14 1 1981173 66 Rhizobium sp. N1314 species 0 1703961 1 18 176 1 56730 species 0 Rhizobium gallicum Rhizobium tropici species 0 113 1 398 Neorhizobium 0 genus 3 166 2 1525371 1 Neorhizobium galegae 0 species 163 1 399 11 1385 7 357 1 Agrobacterium genus 0 2 1183400 752 0 species group Agrobacterium tumefaciens species 0 644 358 1 1 1176649 108 Agrobacterium fabrum species 0 0 species Agrobacterium vitis 373 1 113 Agrobacterium rhizogenes species 0 1 359 73 no rank 0 436 2632611 2 95 861208 1 0 species Agrobacterium sp. H13-3 species 0 Agrobacterium sp. RAC06 1 1842536 341 0 class Gammaproteobacteria 1 850 1236 575473 529 4 1240482 559 0 order 0 family Orbaceae 559 3 1 1240483 4 0 genus 1 1335631 239 Frischella perrara 0 species 239 1 1267021 1 1193503 2 317 2 0 genus Gilliamella 0 species Gilliamella apicola 315 1196095 1 1 30 135625 6412 4 order 0 Pasteurellales family 0 Pasteurellaceae 6408 23 1 712 29 0 genus Mannheimia 1 4 75984 458 3 108 2645054 1 0 no rank 108 1 1432056 0 species Mannheimia sp. USDA-ARS-USMARC-1261 Mannheimia varigena species 0 189 85404 1 Mannheimia haemolytica species 0 158 75985 1 genus 0 119 155493 1 Gallibacterium anatis 0 species 119 750 1 1 3 745 1142 18 0 genus Pasteurella 886 747 1 Pasteurella multocida species 0 754 1 238 0 species Pasteurella dagmatis genus 0 Aggregatibacter 420 5 1 416916 3 234 714 1 0 species Aggregatibacter actinomycetemcomitans Aggregatibacter aphrophilus species 0 181 732 1 257 2 1 214906 2 0 genus Histophilus species 0 Histophilus somni 731 1 255 genus 0 2094023 1 244 244 1 738 species 0 Glaesserella parasuis 6 459 713 5 1 Actinobacillus 0 genus species 0 Actinobacillus succinogenes 96 1 67854 Actinobacillus suis species 0 1 716 87 715 1 158 0 species Actinobacillus pleuropneumoniae Actinobacillus equuli species 0 112 718 1 24 3036 724 6 1 Haemophilus 0 genus 1 249188 115 Haemophilus pittmaniae 0 species 0 no rank 104 1 2609962 104 712310 1 species 0 Haemophilus sp. oral taxon 036 2150 1 727 0 species Haemophilus influenzae Haemophilus parainfluenzae 0 species 729 1 110 730 1 533 [Haemophilus] ducreyi species 0 genus 0 84 697331 1 1 157673 84 0 species [Mannheimia] succiniciproducens 2 476528 1 2 166 Bibersteinia 0 genus Bibersteinia trehalosi 0 species 164 1 47735 0 order 3 1692040 169 0 family 169 1692041 3 genus 0 1 1744881 60 1 1620215 60 0 species Sulfuricaulis limicola 1692042 2 1 1 109 Sulfurifustis 0 genus 1 1675686 108 species 0 Sulfurifustis variabilis 30 15347 135619 67 1 Oceanospirillales 0 order 0 family Kangiellaceae 1 1920240 6 1079 2 261963 5 1 36 1077 Kangiella 0 genus species 0 Kangiella sediminilitoris 1144748 1 250 0 species Kangiella koreensis 1 261964 243 Kangiella geojedonensis species 0 914150 1 247 301 1 1561924 species 0 Kangiella profundi 2 224379 386 0 family Hahella genus 0 2 386 2 158481 1 Hahella chejuensis species 0 384 1 158327 family 0 Alcanivoracaceae 2239 3 1 9 224372 Alcanivorax genus 0 41 1946 59753 6 1 1 285091 243 species 0 Alcanivorax dieselolei species 0 Alcanivorax pacificus 187 1306787 1 550 1 2638842 0 no rank Alcanivorax sp. NBRC 101098 0 species 550 1113728 1 1 59754 582 species 0 Alcanivorax borkumensis Alcanivorax xenomutans 0 species 343 1 1094342 290 21 1 2025617 2 0 genus Ketobacter species 0 Ketobacter alkanivorans 1 1917421 269 family 0 Oceanospirillaceae 1 135620 13 3908 16 1477 25 1 4 28253 0 genus Marinomonas 196814 1 583 no rank 0 species 0 Marinomonas sp. MWYL1 400668 1 583 species 0 Marinomonas posidonica 501 1 936476 119864 1 368 Marinomonas mediterranea species 0 2 684 2 187492 1 Thalassolituus genus 0 Thalassolituus oleivorans 0 species 682 1 187493 genus 0 Marinobacterium 1 48075 2 677 4 673 1821621 1 Marinobacterium aestuarii species 0 1 2 1537406 546 8 genus 0 Bacterioplanes 538 1 1249553 Bacterioplanes sanyensis species 0 4 508 2 188907 1 Oleispira genus 0 species 0 Oleispira antarctica 188908 1 504 0 family Halomonadaceae 1 29 28256 6156 22 177 7 1 2 404432 0 genus Salinicola Salinicola tamaricis species 0 1 1771309 170 5 114403 1617 no rank 0 Candidatus Portiera genus 0 15 1440 2 235572 1 1 91844 1425 Candidatus Portiera aleyrodidarum species 0 0 genus Candidatus Evansia 1 2 1495768 125 1 124 1 1495769 Candidatus Evansia muelleri 0 species 52 114185 1 0 genus 114186 1 52 Candidatus Carsonella ruddii species 0 genus 0 204286 1 217 0 species Cobetia marina 28258 1 217 Halomonas genus 0 47 3445 15 2745 1 0 no rank 8 2609666 2184 1 1971364 279 species 0 Halomonas sp. GT Halomonas sp. 'Soap Lake #6' 0 species 1949203 1 337 species 0 Halomonas sp. 'Soap Lake #7' 337 1962264 1 202 1504981 1 Halomonas sp. KO116 0 species Halomonas sp. 1513 species 0 1883416 1 128 Halomonas sp. SF2003 species 0 320 1 2136172 Halomonas sp. R57-5 species 0 1610576 1 373 1 1118153 208 species 0 Halomonas sp. GFAJ-1 0 species Halomonas hydrothermalis 115561 1 311 0 species Halomonas campaniensis 213554 1 153 127 1 507626 Halomonas chromatireducens 0 species Halomonas huangheensis 0 species 281 1178482 1 128 1897729 1 Halomonas aestuarii species 0 0 species Halomonas beimenensis 214 1 475662 0 genus 85 42054 1 158080 1 85 Chromohalobacter salexigens 0 species 5 466 3 504090 1 Kushneria genus 0 0 species Kushneria marisflavi 1 157779 158 0 species Kushneria konosiri 303 698828 1 376488 1 127 0 genus Halotalea alkalilenta 0 species 1 376489 127 5 255527 1 1 1041 Saccharospirillaceae 0 family 2 1445504 1 3 350 Gynuella 0 genus 347 1445505 1 Gynuella sunshinyii 0 species Reinekea 0 genus 2 230494 1 1 690 689 1 1336806 species 0 Reinekea forsetii 6 508 191033 2 1 Oleiphilaceae family 0 1 141450 502 genus 0 502 141451 1 species 0 Oleiphilus messinensis 18 8496 28 135624 1 Aeromonadales 0 order family 0 Aeromonadaceae 8478 37 1 84642 27 Oceanisphaera 0 genus 3 225143 1 1 681 1 1416627 414 Oceanisphaera profunda species 0 1 1903694 266 species 0 Oceanisphaera sp. AMac2203 genus 0 Aeromonas 7108 110 1 642 18 257493 8 4274 no rank 0 0 species Aeromonas sp. ASNIH7 1 1920107 76 species 0 Aeromonas sp. CU5 158 1 2033033 178 2033032 1 Aeromonas sp. CA23 species 0 1636608 1 63 Aeromonas sp. ASNIH3 species 0 Aeromonas sp. ASNIH4 species 0 1 1636609 146 species 0 Aeromonas sp. ASNIH2 134 1636607 1 Aeromonas sp. ASNIH1 species 0 1 1636606 3158 361 1 1758179 0 species Aeromonas sp. ASNIH5 100 1 558964 0 species Aeromonas aquatica 38 648 1 0 species Aeromonas caviae species 0 Aeromonas hydrophila 644 1 940 Aeromonas schubertii 0 species 119 1 652 645 1 660 species 0 Aeromonas salmonicida 168 651 1 species 0 Aeromonas media 1 196024 63 0 species Aeromonas dhakensis Aeromonas veronii 0 species 1 654 514 species 0 Aeromonas rivipollensis 122 1 948519 6 275 347533 2 1 Zobellella genus 0 1 347534 269 Zobellella denitrificans species 0 genus 0 206 1 129577 206 1 2636315 0 no rank species 0 Oceanimonas sp. GK1 206 1 511062 Tolumonas 0 genus 3 171 43947 2 1 43948 1 168 Tolumonas auensis 0 species Enterobacterales 0 order 145 154317 239 91347 1 451511 2 1273 0 no rank Plesiomonas 0 genus 2 1273 702 2 1 1271 1 703 0 species Plesiomonas shigelloides 44565 192 1 543 115 0 family Enterobacteriaceae 22 547 1 146 9004 Enterobacter genus 0 354276 12 8084 species group 0 species 0 Enterobacter cancerogenus 57 69218 1 1 158836 3 3037 2869 0 species Enterobacter hormaechei 89 1812934 1 subspecies 0 Enterobacter cloacae complex 'Hoffmann cluster III' Enterobacter xiangfangensis 0 subspecies 79 1296536 1 1 61645 254 Enterobacter asburiae 0 species species 0 Enterobacter cloacae 550 1 4402 299767 1 59 Enterobacter ludwigii 0 species 1812935 1 49 0 species Enterobacter cloacae complex 'Hoffmann cluster IV' 90 1 208224 species 0 Enterobacter kobei 136 3 2757714 0 no rank 1 2027919 50 Enterobacter cloacae complex bacterium 0 species Enterobacter cloacae complex sp. ECNIH7 0 species 41 1 1915310 species 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 45 2077137 1 774 2608935 9 0 no rank species 0 Enterobacter sp. HK169 1 1868135 43 1166130 1 100 Enterobacter sp. R4-368 0 species Enterobacter sp. FY-07 0 species 92 1692238 1 152 1 399742 Enterobacter sp. 638 0 species 92 1 1914861 0 species Enterobacter sp. SA187 Enterobacter sp. ODB01 0 species 90 1827481 1 1 1560339 74 Enterobacter sp. E20 0 species 91 2051905 1 Enterobacter sp. CRENT-193 species 0 Enterobacter sp. Crenshaw 0 species 1977566 1 40 Salmonella genus 0 590 3 1 12 12065 28901 1 9466 Salmonella enterica species 0 species 0 Salmonella bongori 2587 1 54736 Citrobacter genus 0 67 3418 544 14 1 no rank 0 2 2644389 201 species 0 Citrobacter sp. CFNIH10 1920110 1 102 1 1702170 99 0 species Citrobacter sp. FDAARGOS_156 Citrobacter amalonaticus species 0 414 1 35703 Citrobacter farmeri species 0 812 67824 1 species group 0 7 1344959 1744 1 2077149 139 0 species Citrobacter freundii complex sp. CFNIH9 295 1 67827 0 species Citrobacter werkmanii 0 species Citrobacter freundii complex sp. CFNIH4 2077148 1 67 species 0 Citrobacter freundii 841 546 1 species 0 Citrobacter freundii complex sp. CFNIH2 2066049 1 57 1 57706 221 Citrobacter braakii species 0 124 2077147 1 Citrobacter freundii complex sp. CFNIH3 0 species species 0 Citrobacter koseri 102 1 545 78 67825 1 species 0 Citrobacter rodentium 15 6895 5 561 1 Escherichia 0 genus Escherichia albertii 0 species 208962 1 274 0 species Escherichia fergusonii 128 1 564 Escherichia marmotae 0 species 1 1499973 257 6221 1 562 species 0 Escherichia coli 1720 191675 17 0 no rank 84563 17 1720 0 clade genus 0 1906659 1 53 1778263 1 53 0 species Candidatus Hoaglandella endobia 0 clade 146507 3 622 1 568987 396 genus 0 0 species Candidatus Hamiltonella defensa 396 1 138072 155 134287 1 secondary endosymbiont of Heteropsylla cubana species 0 species 0 secondary endosymbiont of Ctenarytaina eucalypti 1199245 1 71 104 1 1906661 genus 0 0 species Candidatus Gullanella endobia 1 1070130 104 2 102 1906660 2 1 Candidatus Mikella genus 0 1 1778264 100 Candidatus Mikella endobia species 0 132 1682492 1 0 genus Candidatus Tachikawaea gelatinosa species 0 132 1 1410383 genus 0 1 1906657 38 Candidatus Doolittlea endobia species 0 38 1778262 1 7 84564 606 clade 0 genus 0 Candidatus Blochmannia 606 2 1 7 203804 251535 1 131 0 species Candidatus Blochmannia vafer species 0 Candidatus Blochmannia floridanus 1 203907 75 species 0 Candidatus Blochmannia pennsylvanicus 101534 1 96 no rank 0 711328 2 215 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 species 149 1505597 1 species 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 1505596 66 87 251542 1 Candidatus Blochmannia chromaiodes 0 species 63 1 199891 0 clade 1 1835721 63 secondary endosymbiont of Trabutina mannipara species 0 1 3 1330546 296 1 0 genus Pluralibacter 61647 1 200 0 species Pluralibacter gergoviae 95 1334193 1 [Enterobacter] lignolyticus species 0 1 1048757 82 0 genus species 0 Candidatus Moranella endobia 82 1 1048758 Kosakonia 0 genus 5 478 5 1330547 1 Kosakonia oryzae 0 species 143 1 497725 Kosakonia sacchari 0 species 108 1158459 1 144 283686 1 Kosakonia radicincitans 0 species 1 208223 78 Kosakonia cowanii species 0 8 758 1330545 4 1 Lelliottia genus 0 1 1907578 134 Lelliottia jeotgali species 0 85 69220 1 Lelliottia nimipressuralis 0 species 61646 1 531 Lelliottia amnigena 0 species genus 0 Cedecea 571 5 1 158483 2 1 158822 566 species 0 Cedecea neteri 72 6047 570 10 1 Klebsiella genus 0 1463165 1 181 Klebsiella quasipneumoniae 0 species 573 1 2165 Klebsiella pneumoniae 0 species 0 no rank 214 2608929 2 species 0 Klebsiella sp. M5al 1934254 1 101 Klebsiella sp. LTGPAF-6F 0 species 1905288 1 113 548 1134687 1 species 0 Klebsiella michiganensis Klebsiella quasivariicola 0 species 2026240 1 137 Klebsiella oxytoca species 0 548 1 571 1958 548 1 species 0 Klebsiella aerogenes 244366 1 224 0 species Klebsiella variicola 0 genus 119 579 1 61648 1 119 Kluyvera intermedia 0 species 744 5 36866 0 no rank species 0 Enterobacteriaceae bacterium ENNIH3 1 1920128 61 species 0 Enterobacteriaceae bacterium ENNIH1 2066051 1 112 378 1 891974 0 species Plautia stali symbiont 112 1 1920109 0 species Enterobacteriaceae bacterium ENNIH2 Enterobacteriaceae bacterium strain FGI 57 0 species 81 1 693444 71 401618 1 genus 0 species 0 Candidatus Riesia pediculicola 401619 1 71 83654 4 1 7 406 Leclercia genus 0 0 no rank 2 2627398 262 Leclercia sp. LSNIH3 0 species 1920116 1 125 Leclercia sp. LSNIH1 0 species 137 1920114 1 Leclercia adecarboxylata 0 species 137 83655 1 90 1 1 409304 2 0 genus Candidatus Ishikawaella 168169 1 89 Candidatus Ishikawaella capsulata species 0 5 193 4 620 1 Shigella genus 0 44 2629414 1 no rank 0 1 1813821 44 species 0 Shigella sp. PAMC 28760 species 0 Shigella dysenteriae 94 622 1 species 0 Shigella flexneri 623 1 50 8 751 413496 8 1 Cronobacter genus 0 28141 1 181 species 0 Cronobacter sakazakii 74 1 413502 Cronobacter turicensis species 0 163 1163710 1 Cronobacter condimenti 0 species species 0 Cronobacter malonaticus 80 413503 1 103 1 413497 Cronobacter dublinensis species 0 79 1 413501 Cronobacter muytjensii 0 species 1 535744 63 Cronobacter universalis species 0 genus 0 160674 2 574 1 54291 447 Raoultella ornithinolytica 0 species 1 575 127 0 species Raoultella planticola 91 1335483 1 0 genus 91 563 1 Shimwellia blattae 0 species 1 1903411 39 19325 18 0 family Yersiniaceae genus 0 Gibbsiella 1 2 929812 138 4 Gibbsiella quercinecans 0 species 929813 1 134 genus 0 Rouxiella 1 1565532 7 Yersinia genus 0 13 629 1 99 11434 Yersinia enterocolitica 0 species 1661 630 1 0 species group 5137 1649845 3 species 0 Yersinia pestis 1258 1 632 1216 1 633 Yersinia pseudotuberculosis species 0 0 species Yersinia similis 2663 367190 1 0 species Yersinia rohdei 1 29485 192 Yersinia aleksiciae 0 species 152 263819 1 1 631 202 0 species Yersinia intermedia 29484 1 3034 species 0 Yersinia frederiksenii 270 1 29483 Yersinia aldovae 0 species species 0 Yersinia kristensenii 221 28152 1 0 no rank 2653513 1 179 0 species Yersinia sp. FDAARGOS_228 179 1 1839800 287 29486 1 Yersinia ruckeri 0 species Chania genus 0 11 119 1745211 2 1 1639108 1 108 Chania multitudinisentens 0 species genus 0 Serratia 1 16 613 7081 61 0 species Serratia proteamaculans 28151 1 83 Serratia marcescens species 0 1259 615 1 61651 1 87 Serratia ficaria 0 species no rank 0 2647522 8 1764 104623 1 130 0 species Serratia sp. ATCC 39006 Serratia sp. SSNIH1 species 0 115 1758196 1 98 1 671990 Serratia sp. FGI94 0 species Serratia sp. FS14 0 species 139 1 1327989 488142 1 962 Serratia sp. SCBI species 0 species 0 Serratia sp. MYb239 108 2033438 1 Serratia sp. AS12 species 0 1 768490 106 Serratia sp. AS13 species 0 768493 1 106 1 82996 616 0 species Serratia plymuthica Serratia liquefaciens 0 species 191 614 1 0 species Serratia fonticola 47917 1 2930 90 1 61652 Serratia rubidaea species 0 0 genus Rahnella 1 34037 4 528 9 Rahnella aquatilis species 0 141 34038 1 2635087 2 378 no rank 0 1 741091 164 Rahnella sp. Y9602 0 species species 0 Rouxiella sp. ERMR1:05 1805933 1 214 1903412 13 1 10 73702 Hafniaceae family 0 genus 0 Edwardsiella 1 635 8 73011 27 species 0 Edwardsiella ictaluri 67780 1 412 1 1821960 222 Edwardsiella anguillarum species 0 Edwardsiella tarda 0 species 1 636 71604 no rank 0 2 2676541 496 0 species Edwardsiella sp. EA181011 1578828 1 262 species 0 Edwardsiella sp. LADL05-105 234 1 1650654 0 species Edwardsiella hoshinae 93378 1 82 0 species Edwardsiella piscicida 1 1263550 168 3 568 1 21 561 Hafnia genus 0 Hafnia alvei 0 species 406 1 569 0 no rank 2621980 1 134 1 1848580 134 species 0 Hafnia sp. CBA7124 genus 0 1 82982 120 0 species Obesumbacterium proteus 120 1 82983 12 5654 1903414 21 1 Morganellaceae family 0 0 genus 637 1 153 153 1 634113 Arsenophonus symbiont of Lipoptena fortisetosa species 0 3 583 1 9 1340 Proteus genus 0 1098 584 1 Proteus mirabilis 0 species 233 585 1 Proteus vulgaris 0 species 271 3 1 2 581 genus 0 Morganella Morganella morganii species 0 582 1 268 1 586 4 1219 6 genus 0 Providencia 556 588 1 0 species Providencia stuartii 126385 1 183 0 species Providencia alcalifaciens Providencia rettgeri 0 species 587 1 474 2 1126 626 6 1 Xenorhabdus 0 genus 0 species Xenorhabdus bovienii 1 40576 391 0 species Xenorhabdus nematophila 176 628 1 Xenorhabdus hominickii 0 species 1 351679 147 1 40577 205 0 species Xenorhabdus poinarii 1 351671 205 Xenorhabdus doucetiae 0 species 9 1533 29487 4 1 Photorhabdus 0 genus 0 species Photorhabdus asymbiotica 395 291112 1 Photorhabdus temperata species 0 574560 1 123 29488 1 1006 species 0 Photorhabdus luminescens 5477 18 1 27 1903409 0 family Erwiniaceae 180 1 1 51228 2 genus 0 Wigglesworthia species 0 Wigglesworthia glossinidia 179 51229 1 genus 0 Pantoea 2282 56 1 53335 11 105 1 1891675 species 0 Pantoea alhagi 470934 1 574 species 0 Pantoea vagans 240 1654067 1 species group 0 Pantoea agglomerans 0 species 240 1 549 1 66269 181 Pantoea stewartii 0 species no rank 0 2630326 3 479 142 1 1484158 0 species Pantoea sp. PSNIH1 Pantoea sp. At-9b 0 species 193 592316 1 1484157 1 144 0 species Pantoea sp. PSNIH2 1 1235990 117 Candidatus Pantoea carbekii 0 species Pantoea ananatis species 0 553 1 405 1 1076550 125 species 0 Pantoea rwandensis genus 0 179 82986 1 179 1 53336 species 0 Tatumella citrea Erwinia genus 0 5 1019 8 551 1 217 1 2622719 no rank 0 217 215689 1 Erwinia sp. Ejp617 species 0 162 1922217 1 Candidatus Erwinia sp. ErCipseudotaxifoliae 0 species 1 552 83 species 0 Erwinia amylovora 1 338565 101 Erwinia tasmaniensis species 0 0 species Erwinia gerundensis 122 1 1619313 Erwinia pyrifoliae species 0 147 1 79967 0 species Erwinia billingiae 1 182337 182 genus 0 Buchnera 1260 5 1 32199 2 9 1 1255 species 0 Buchnera aphidicola 539 2100764 2 genus 0 665914 1 116 species 0 Pantoea gaviniae 423 1 665913 species 0 Pantoea calida 1 1903416 172 0 family 0 genus 172 82984 1 Pragia fontium 0 species 1 82985 172 Pectobacteriaceae 0 family 12 4004 1903410 20 1 Pectobacterium 0 genus 122277 6 1 32 1148 1 2042057 134 0 species Pectobacterium polaris 0 species Pectobacterium atrosepticum 126 29471 1 554 1 412 Pectobacterium carotovorum species 0 Pectobacterium wasabiae species 0 226 1 55208 1905730 1 218 0 species Pectobacterium parmentieri Sodalis genus 0 9 893 5 84565 1 Sodalis praecaptivus 0 species 156 1239307 1 Sodalis glossinidius species 0 133 1 63612 species 0 Candidatus Sodalis pierantonius 1 1486991 231 species 0 Sodalis endosymbiont of Henestaris halophilus 364 1929246 1 Dickeya genus 0 18 1766 204037 6 1 83 204038 1 0 species Dickeya dadantii Dickeya fangzhongdai 0 species 104 1778540 1 1089444 1 201 Dickeya solani species 0 1239 204042 1 Dickeya zeae species 0 1 204039 121 Dickeya dianthicola species 0 0 genus Brenneria 1 71655 2 185 1 184 1109412 1 0 species Brenneria goodwinii 5 3971 21 118969 1 Legionellales order 0 0 family Coxiellaceae 474 7 1 118968 5 no rank 0 129 134284 1 Coxiella-like endosymbiont 0 species 129 1592897 1 Coxiella 0 genus 2 338 3 776 1 Coxiella burnetii species 0 777 1 260 76 2676648 1 0 no rank species 0 Coxiella endosymbiont of Amblyomma americanum 1 325775 76 1 15 444 3492 5 0 family Legionellaceae Tatlockia 0 genus 2 465 1 7 164 0 species Tatlockia micdadei 157 1 451 Legionella genus 0 12 445 1 8 3323 Legionella hackeliae 0 species 194 1 449 species 0 Legionella lansingensis 175 45067 1 Legionella clemsonensis 0 species 208 1867846 1 1 66969 198 species 0 Legionella waltersii 96230 1 244 0 species Legionella fallonii 0 species Legionella spiritensis 452 1 133 244 1 28087 0 species Legionella sainthelensi 105 2005262 1 Legionella endosymbiont of Polyplax serrata 0 species 0 species Legionella pneumophila 1287 1 446 274 450 1 species 0 Legionella longbeachae 1 29423 253 species 0 Legionella oakridgensis order 0 Methylococcales 1963 5 1 10 135618 family 0 Methylococcaceae 1958 2 1 403 9 0 genus 356 39773 1 1 271065 356 Methylomicrobium alcaliphilum 0 species 81 1 413 0 genus 414 1 81 0 species Methylococcus capsulatus 161 1 762296 genus 0 1704499 1 161 species 0 Methylovulum psychrotolerans Methylomonas genus 0 416 5 1 45 1358 Methylomonas methanica species 0 421 1 172 0 species Methylomonas koyamae 702114 1 104 2608980 1 179 no rank 0 1 1727196 179 Methylomonas sp. DH-1 0 species species 0 Methylomonas denitrificans 1538553 1 858 Vibrionales 0 order 18 67281 135623 44 1 1 43 641 67263 58 0 family Vibrionaceae 1 2 246861 278 6 genus 0 Grimontia 0 species Grimontia hollisae 272 1 673 Aliivibrio 0 genus 4 511678 1 12 1260 0 species Aliivibrio salmonicida 1 40269 247 Aliivibrio fischeri species 0 668 1 548 453 80852 1 species 0 Aliivibrio wodanis 45861 10 1 4 657 genus 0 Photobacterium 467 1 74109 Photobacterium profundum 0 species 0 species Photobacterium gaetbulicola 188 1 1295392 0 species Photobacterium damselae 38293 1 45196 Vibrio 0 genus 662 30 1 342 18851 440 1 1435069 0 species Vibrio tritonius 553239 1 324 Vibrio breoganii species 0 0 species Vibrio hyugaensis 1 1534743 326 species group 0 772 1 1891919 0 species Vibrio tubiashii 1 29498 772 species 0 Vibrio furnissii 29494 1 226 0 species group 7084 717610 10 787 669 1 Vibrio harveyi 0 species species 0 Vibrio parahaemolyticus 2348 670 1 2 2315253 577 0 species subgroup 384 50719 1 species 0 Vibrio diabolicus Vibrio antiquarius species 0 1 150340 193 Vibrio natriegens species 0 1 691 494 0 species Vibrio alginolyticus 898 1 663 1 766224 188 Vibrio jasicida 0 species Vibrio campbellii 0 species 1077 1 680 species 0 Vibrio owensii 367 1 696485 Vibrio rotiferianus species 0 1 190895 348 Vibrio scophthalmi species 0 1066 1 45658 213 1 2025808 Vibrio qinghaiensis 0 species species 0 Vibrio tapetis 52443 1 454 Vibrio mimicus 0 species 1 674 454 2614977 2 394 no rank 0 Vibrio sp. EJY3 0 species 191 1116375 1 species 0 Vibrio sp. 2521-89 203 1 2014742 0 species Vibrio cholerae 625 666 1 305 1 687 Vibrio gazogenes species 0 164 1 28173 0 species Vibrio nigripulchritudo Vibrio vulnificus 0 species 1 672 1873 0 species Vibrio tasmaniensis 2195 1 212663 Vibrio coralliilyticus 0 species 608 190893 1 55601 1 762 0 species Vibrio anguillarum 224 676 1 species 0 Vibrio fluvialis 2042066 2 1 3 955 Paraphotobacterium genus 0 1 1755811 952 Paraphotobacterium marinum 0 species Cellvibrionales 0 order 8 7817 1706369 29 1 family 0 Spongiibacteraceae 1 1706375 7 2118 26 Oceanicoccus 0 genus 1084558 2 1 2 1051 0 species Oceanicoccus sagamiensis 1049 1 716816 Zhongshania genus 0 3 518 2 1434050 1 515 1 1470434 0 species Zhongshania aliphaticivorans 523 3 1 630749 2 genus 0 Spongiibacter 520 2631504 1 no rank 0 Spongiibacter sp. IMCC21906 species 0 1 1620392 520 1706371 12 1 7 4007 Cellvibrionaceae 0 family 2 455 2425 2 1 Teredinibacter 0 genus 453 1 2426 0 species Teredinibacter turnerae 6 1179 4 10 1 Cellvibrio 0 genus 0 no rank 837 2624793 2 1 1945512 465 0 species Cellvibrio sp. PSBB023 1987723 1 372 Cellvibrio sp. PSBB006 0 species 0 species Cellvibrio japonicus 155077 1 336 2 447467 1 2 312 Simiduia 0 genus 447471 1 310 Simiduia agarivorans 0 species genus 0 544 1 2036021 Agarilytica rhodophyticola 0 species 1 1737490 544 genus 0 Saccharophagus 1510 6 1 316625 2 species 0 Saccharophagus degradans 86304 1 1504 Microbulbiferaceae 0 family 1706373 5 1 2 757 29 755 48073 4 1 Microbulbifer 0 genus 0 species Microbulbifer agarilyticus 1 260552 280 Microbulbifer aggregans species 0 1769779 1 180 1 252514 266 Microbulbifer thermotolerans 0 species 1 1706372 4 927 2 0 family Halieaceae genus 0 Halioglobus 925 10 1 3 1217416 1 930806 498 Halioglobus pacificus 0 species 0 species Halioglobus japonicus 417 1 930805 0 no rank 612 2 33811 1 1248727 122 endosymbiont of unidentified scaly snail isolate Monju species 0 490 83406 1 gamma proteobacterium HdN1 species 0 46071 61 1 135614 48 order 0 Xanthomonadales 9 1775411 1 1 919 Rhodanobacteraceae 0 family 3 231454 304 genus 0 84 445710 1 Dyella thiooxydans 0 species 74 1379159 1 Dyella jiangningensis 0 species Dyella japonica species 0 146 1 231455 genus 0 102 2233801 1 Xanthomonadales bacterium D13 0 species 1 2021234 102 75309 1 126 genus 0 species 0 Rhodanobacter denitrificans 666685 1 126 genus 0 134 1 323413 species 0 Dokdonella koreensis 134 323415 1 0 genus 179 1 70411 81475 1 179 0 species Frateuria aurantia 0 genus 73 1 242605 species 0 Luteibacter rhizovicinus 1 242606 73 45091 151 1 38 32033 0 family Xanthomonadaceae 1 83618 3 513 5 0 genus Pseudoxanthomonas Pseudoxanthomonas suwonensis species 0 1 314722 338 Pseudoxanthomonas spadix species 0 170 415229 1 genus 0 2338 1 2370 Xylella fastidiosa 0 species 2338 1 2371 Lysobacter genus 0 7 11880 68 5 1 Lysobacter enzymogenes 0 species 1 69 235 Lysobacter gummosus 0 species 1 262324 439 5153 84531 1 0 species Lysobacter antibioticus Lysobacter capsici species 0 6046 1 435897 91 2 1 2 83614 genus 0 Luteimonas 0 species Luteimonas sp. 100111 89 1 2006110 0 genus Xanthomonas 24439 136 1 17 338 0 species Xanthomonas axonopodis 1 53413 188 species group 0 643453 2 4373 366648 1 625 Xanthomonas fuscans 0 species 0 species Xanthomonas citri 1 346 3748 0 species Xanthomonas fragariae 1779 1 48664 0 species Xanthomonas oryzae 347 1 5049 148 442694 1 0 species Xanthomonas perforans 1027 1 343 Xanthomonas translucens 0 species 316 1 456327 0 species Xanthomonas euvesicatoria 308 56454 1 species 0 Xanthomonas hortorum 56458 1 163 species 0 Xanthomonas sacchari Xanthomonas campestris 0 species 9116 339 1 0 species Xanthomonas phaseoli 1985254 1 373 Xanthomonas vasicola 0 species 114 1 56459 826 56460 1 Xanthomonas vesicatoria 0 species 0 species Xanthomonas albilineans 29447 1 212 Xanthomonas alfalfae species 0 311 1 366650 1 9 40323 5679 61 0 genus Stenotrophomonas 1671 196198 4 no rank 0 0 species Stenotrophomonas sp. WZN-1 450 2005046 1 Stenotrophomonas sp. LM091 species 0 1 1904944 129 1827305 1 621 Stenotrophomonas sp. MYb57 species 0 1 1793721 471 species 0 Stenotrophomonas sp. KCTC 12332 83617 1 475 Stenotrophomonas nitritireducens 0 species 0 species Stenotrophomonas acidaminiphila 128780 1 273 0 species Stenotrophomonas rhizophila 123 1 216778 1 995085 3076 species group 0 3076 1 40324 0 species Stenotrophomonas maltophilia 0 order Alteromonadales 175773 51 1 100 135622 0 family 267894 3 2384 2384 3 1 3 67572 0 genus Psychromonas Psychromonas ingrahamii 0 species 1134 357794 1 1247 2614957 1 no rank 0 Psychromonas sp. CNPT3 species 0 1247 1 314282 family 0 Shewanellaceae 33771 16 1 267890 25 22 24 1 99 33755 Shewanella genus 0 Shewanella sediminis 0 species 1 271097 1785 908 225848 1 species 0 Shewanella psychrophila 24 1 253 Shewanella putrefaciens 0 species 0 species Shewanella frigidimarina 56812 1 689 0 species Shewanella piezotolerans 272 1 404011 species 0 Shewanella woodyi 1167 60961 1 0 species Shewanella baltica 62322 1 14851 5160 1 60217 species 0 Shewanella violacea 174 1 60478 Shewanella amazonensis 0 species 311 1 70864 Shewanella pealeana 0 species 188 260364 1 Shewanella marisflavi species 0 93973 1 696 Shewanella japonica species 0 species 0 Shewanella loihica 1 359303 140 Shewanella bicestrii 0 species 1 2018305 159 1826 196818 6 0 no rank species 0 Shewanella sp. MR-4 162 1 60480 species 0 Shewanella sp. Pdp11 473 1 2059264 225 1 2029986 0 species Shewanella sp. WE21 Shewanella sp. W3-18-1 0 species 1 351745 328 269 60481 1 species 0 Shewanella sp. MR-7 94122 1 369 Shewanella sp. ANA-3 species 0 species 0 Shewanella halifaxensis 4030 271098 1 0 species Shewanella oneidensis 70863 1 172 0 species Shewanella denitrificans 875 1 192073 1 267891 3 703 9 family 0 Moritellaceae 2 694 2 58050 1 Moritella 0 genus 0 species Moritella viscosa 80854 1 692 Ferrimonadaceae 0 family 12 135 2 267892 1 123 1 44011 genus 0 123 1 44012 Ferrimonas balearica 0 species 15 113046 72275 28 1 Alteromonadaceae 0 family 0 genus Agarivorans 404 1 1 2 261825 403 680279 1 Agarivorans gilvus 0 species genus 0 1133 2 89404 no rank 0 1 2618684 766 983545 1 766 species 0 Glaciecola sp. 4H-3-7+YE-5 0 species Glaciecola nitratireducens 1 300231 367 0 genus 1 1621534 1047 1047 1 326544 species 0 Paraglaciecola psychrophila Alteromonas genus 0 10 226 1 207 107057 0 species Alteromonas stellipolaris 9781 1 233316 11534 2614992 3 no rank 0 species 0 Alteromonas sp. MB-3u-76 1 2058133 2501 Alteromonas sp. RW2A1 0 species 1 1917158 2134 Alteromonas sp. Mac1 0 species 6899 1777491 1 species 0 Alteromonas mediterranea 314275 1 7266 63966 715451 1 Alteromonas naphthalenivorans 0 species Alteromonas australica 0 species 589873 1 1591 6711 1 287094 0 species Alteromonas addita Alteromonas macleodii 0 species 6001 1 28108 1 10 2742 2070 32 0 genus Marinobacter Marinobacter salarius species 0 435 1420917 1 Marinobacter hydrocarbonoclasticus species 0 2743 1 345 0 species Marinobacter psychrophilus 227 1 330734 1 1420916 188 0 species Marinobacter similis 83889 3 548 no rank 0 Marinobacter sp. CP1 species 0 143 1 1671721 0 species Marinobacter sp. LQ44 183 1 1749259 490759 1 222 0 species Marinobacter sp. BSs20148 Marinobacter salinus species 0 190 1 1874317 1 1033846 105 Marinobacter adhaerens 0 species 0 genus Lacimicrobium 1320 1 1 1751872 2 Lacimicrobium alkaliphilum 0 species 1526571 1 1319 1 25 267888 20183 4 family 0 Pseudoalteromonadaceae 20179 127 1 24 53246 genus 0 Pseudoalteromonas 0 species Pseudoalteromonas atlantica 1 288 4622 1 28109 601 species 0 Pseudoalteromonas nigrifaciens 267375 1 346 Pseudoalteromonas marina species 0 161398 1 301 0 species Pseudoalteromonas phenolica 43657 1 476 0 species Pseudoalteromonas luteoviolacea 0 species Pseudoalteromonas issachenkonii 432 152297 1 28107 1 504 0 species Pseudoalteromonas espejiana 437 314281 1 0 species Pseudoalteromonas tunicata 485 43659 1 0 species Pseudoalteromonas tetraodonis 408 1 166935 0 species Pseudoalteromonas translucida 0 species Pseudoalteromonas aliena 290 1 247523 204 43658 1 Pseudoalteromonas rubra 0 species Pseudoalteromonas haloplanktis 0 species 371 1 228 5 194690 3561 no rank 0 534 1 1761891 species 0 Pseudoalteromonas sp. 13-15 0 species Pseudoalteromonas sp. Bsw20308 1 283699 311 1514074 1 1856 0 species Pseudoalteromonas sp. NC201 234831 1 524 species 0 Pseudoalteromonas sp. SM9913 336 1720343 1 species 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv 394751 1 390 Pseudoalteromonas arctica 0 species species 0 Pseudoalteromonas agarivorans 176102 1 5494 298657 1 529 Pseudoalteromonas spongiae 0 species 1 1348114 399 0 species Pseudoalteromonas piratica 202 43662 1 0 species Pseudoalteromonas piscicida 8 267889 1 2 4480 Colwelliaceae family 0 0 genus 1 1518149 439 439 1763536 1 species 0 Thalassotalea crassostreae 1 6 28228 4039 18 0 genus Colwellia 0 no rank 2363 196834 3 664 1 58049 species 0 Colwellia sp. MT41 Colwellia sp. PAMC 21821 species 0 828 1816219 1 871 1816218 1 Colwellia sp. PAMC 20917 species 0 Colwellia beringensis species 0 1015 1967665 1 species 0 Colwellia psychrerythraea 643 1 28229 1020 5 267893 family 0 0 genus Idiomarina 1 135575 5 1020 6 468 2614829 2 no rank 0 2055892 1 259 0 species Idiomarina sp. X4 2100422 1 209 Idiomarina sp. OT37-5b species 0 259 1 135577 0 species Idiomarina loihiensis 1096243 1 287 0 species Idiomarina piscisalsi 0 order 1 1775403 151 family 0 151 1 2689614 genus 0 151 469322 1 151 1 465721 0 species Steroidobacter denitrificans Pseudomonadales order 0 118 60861 128 72274 1 0 family Pseudomonadaceae 1 85 135621 45242 178 Pseudomonas 0 genus 286 80 1 466 44040 species 0 Pseudomonas cerasi 1 1583341 1746 Pseudomonas frederiksbergensis species 0 359 104087 1 117 101564 1 species 0 Pseudomonas alcaliphila Pseudomonas rhizosphaerae species 0 1 216142 83 1 930166 386 Pseudomonas brassicacearum species 0 193 1788301 1 species 0 Pseudomonas versuta 30 196821 7317 no rank 0 0 species Pseudomonas sp. MYb193 88 1 1827300 111 1 1649877 0 species Pseudomonas sp. CCOS 191 1 2069256 111 0 species Pseudomonas sp. XWY-1 Pseudomonas sp. SWI36 0 species 149 2083052 1 240 1534110 1 Pseudomonas sp. DR 5-09 species 0 1611770 1 190 Pseudomonas sp. MRSN12121 0 species 1 2049589 138 Pseudomonas sp. HLS-6 species 0 192 2067572 1 species 0 Pseudomonas sp. NC02 Pseudomonas sp. JY-Q 0 species 1338689 1 185 Pseudomonas sp. PONIH3 0 species 115 1 1636610 1500686 1 184 0 species Pseudomonas sp. Os17 Pseudomonas sp. S-6-2 0 species 378 1931241 1 1 1856685 127 0 species Pseudomonas sp. TCU-HL1 species 0 Pseudomonas sp. TKP 1523 1 1415630 species 0 Pseudomonas sp. SWI6 2083051 1 121 Pseudomonas sp. ATCC 13867 0 species 1294143 1 143 Pseudomonas sp. URMO17WK12:I11 species 0 1283291 1 657 species 0 Pseudomonas sp. LG1D9 2083054 1 175 166 1207075 1 0 species Pseudomonas sp. UW4 species 0 Pseudomonas sp. StFLB209 1 1028989 431 Pseudomonas sp. St29 species 0 178 1500687 1 species 0 Pseudomonas sp. M30-35 1 1981174 549 Pseudomonas sp. FDAARGOS_380 species 0 2018067 1 104 1 69328 61 Pseudomonas sp. VLB120 species 0 species 0 Pseudomonas sp. FGI182 157 1259844 1 1930532 1 354 species 0 Pseudomonas sp. CC6-YY-74 118 1659194 1 0 species Pseudomonas sp. GR 6-02 Pseudomonas sp. LH1G9 0 species 107 1 2083055 0 species Pseudomonas sp. SWI44 2083053 1 144 121 1898684 1 Pseudomonas sp. LPH1 0 species 0 species Pseudomonas entomophila 89 1 312306 136845 6 9495 species group 0 Pseudomonas fulva species 0 47880 1 464 Pseudomonas plecoglossicida 0 species 147 1 70775 Pseudomonas monteilii species 0 1 76759 357 1259 1 78327 Pseudomonas mosselii 0 species 47885 1 469 Pseudomonas oryzihabitans 0 species Pseudomonas putida 0 species 1 303 6799 Pseudomonas silesiensis 0 species 533 1 1853130 Pseudomonas parafulva species 0 245 1 157782 Pseudomonas alkylphenolica species 0 122 1 237609 0 species Pseudomonas psychrotolerans 1 237610 141 92 157783 1 0 species Pseudomonas cremoricolorata 0 species group 9 136843 7790 75612 1 149 species 0 Pseudomonas mandelii species 0 Pseudomonas fluorescens 1 294 4971 380021 1 230 Pseudomonas protegens 0 species species 0 Pseudomonas veronii 76761 1 137 Pseudomonas corrugata species 0 1 47879 125 1 200450 1661 species 0 Pseudomonas trivialis 1 200451 101 species 0 Pseudomonas poae 47878 1 344 Pseudomonas azotoformans species 0 76758 1 72 Pseudomonas orientalis 0 species species group 0 136842 2 1546 939 587753 1 Pseudomonas chlororaphis species 0 1 296 607 Pseudomonas fragi species 0 species 0 Pseudomonas knackmussii 65741 1 141 species group 0 5046 136846 2 1 74829 91 Pseudomonas balearica 0 species 4955 578833 1 species subgroup 0 4955 316 1 Pseudomonas stutzeri 0 species 0 species group 4190 6 136841 0 species Pseudomonas alcaligenes 126 1 43263 300 1 557 species 0 Pseudomonas mendocina 0 species Pseudomonas citronellolis 377 53408 1 Pseudomonas aeruginosa species 0 2262 1 287 53412 1 141 0 species Pseudomonas resinovorans 0 species subgroup 727 1232139 1 0 species Pseudomonas furukawaii 727 1 1149133 1 198620 343 0 species Pseudomonas koreensis species group 0 3398 8 136849 2775504 1 154 no rank 0 0 species Pseudomonas sp. Lz4W 1206777 1 154 101 33069 1 Pseudomonas viridiflava species 0 0 species subgroup 1305 251695 1 1 317 1305 0 species Pseudomonas syringae Pseudomonas cichorii 0 species 99 36746 1 Pseudomonas syringae group genomosp. 3 species 0 1 251701 931 685 251698 2 species subgroup 0 species 0 Pseudomonas savastanoi 482 1 29438 203 47877 1 species 0 Pseudomonas amygdali Pseudomonas avellanae 0 species 123 46257 1 0 species Pseudomonas lurida 1 244566 82 Pseudomonas antarctica 0 species 219572 1 120 0 genus 508 1 1849530 0 species Oblitimonas alkaliphila 508 1697053 1 516 351 3 subfamily 0 Azotobacter genus 0 11 516 352 3 1 1 353 293 Azotobacter chroococcum 0 species 1 354 212 Azotobacter vinelandii species 0 15501 27 1 468 42 family 0 Moraxellaceae 4113 55 1 497 11 0 genus Psychrobacter 0 species Psychrobacter alimentarius 242 261164 1 0 species Psychrobacter arcticus 276 334543 1 248 330922 1 Psychrobacter cryohalolentis species 0 2873 6 196806 no rank 0 species 0 Psychrobacter sp. AntiMn-1 1 1720344 211 Psychrobacter sp. PRwf-1 species 0 1141 1 349106 0 species Psychrobacter sp. P11G5 1699624 1 267 Psychrobacter sp. DAB_AL43B 0 species 519 1 1028416 245 1 571800 Psychrobacter sp. G 0 species 0 species Psychrobacter sp. P2G3 1 1699622 490 419 45610 1 0 species Psychrobacter urativorans 8334 129 1 469 25 genus 0 Acinetobacter Acinetobacter junii species 0 337 40215 1 0 species Acinetobacter soli 1 487316 259 180 108981 1 species 0 Acinetobacter schindleri 1 756892 140 Acinetobacter indicus species 0 256 1 106648 species 0 Acinetobacter bereziniae species 0 Acinetobacter johnsonii 185 40214 1 1324350 1 265 0 species Acinetobacter equi species 0 Acinetobacter oleivorans 293 1148157 1 3750 5 909768 species group 0 1 1785128 257 0 species Acinetobacter lactucae species 0 Acinetobacter nosocomialis 670 1 106654 Acinetobacter pittii 0 species 48296 1 973 1 471 466 Acinetobacter calcoaceticus species 0 Acinetobacter baumannii 0 species 1384 470 1 0 no rank 1621 7 196816 1 2079596 223 0 species Acinetobacter sp. SWBY1 1 1407071 301 Acinetobacter sp. TGL-Y2 0 species 213 1 1608473 Acinetobacter sp. NCu2D-2 0 species 215 1 1758189 Acinetobacter sp. ACNIH2 0 species 1 1636603 241 Acinetobacter sp. ACNIH1 species 0 1 1646498 248 Acinetobacter sp. TTH0-4 0 species species 0 Acinetobacter sp. LoGeW2-3 1808001 1 180 Acinetobacter larvae species 0 1 1789224 258 1 40216 166 Acinetobacter radioresistens species 0 Acinetobacter haemolyticus species 0 292 29430 1 species 0 203 202950 1 Acinetobacter sp. ADP1 strain 0 203 62977 1 1 5 475 3027 8 genus 0 Moraxella 243 386891 1 0 species Moraxella bovoculi Moraxella catarrhalis 0 species 484 480 1 1 34062 2160 0 species Moraxella osloensis 1 29433 132 Moraxella ovis species 0 6649 24 1 135613 46 0 order Chromatiales 3780 8 1 16 1046 0 family Chromatiaceae 17 780 4 1227 1 Nitrosococcus 0 genus species 0 Nitrosococcus watsonii 473531 1 472 Nitrosococcus halophilus species 0 147 133539 1 144 1229 1 Nitrosococcus oceani species 0 0 no rank 223 1 82569 0 species Chromatiaceae bacterium 2141T.STBD.0c.01a 223 1978339 1 1 169 1980513 2 1 Candidatus Nitrosoglobus 0 genus 168 1630141 1 species 0 Candidatus Nitrosoglobus terrae 0 genus 1 85076 238 0 species Marichromatium purpuratum 238 1 37487 genus 0 Thioflavicoccus 163 1 1 156885 2 162 1 80679 0 species Thioflavicoccus mobilis Thiocystis 0 genus 2 298 13724 2 1 296 73141 1 species 0 Thiocystis violascens 0 genus Thiodictyon 1740 18 1 53392 2 1166950 1 1722 species 0 Candidatus Thiodictyon syntrophicum 161 1 85072 0 genus Allochromatium vinosum 0 species 161 1049 1 1 182 4 255526 1 Halothiobacillaceae family 0 0 genus Halothiobacillus 1 3 109262 181 6 species 0 Halothiobacillus neapolitanus 67 1 927 1 2636392 108 no rank 0 0 species Halothiobacillus sp. LS2 1 1860122 108 416 1676141 2 0 family 1 416 1676142 2 1 Wenzhouxiangella 0 genus 1579979 1 415 species 0 Wenzhouxiangella marina 148 451214 2 no rank 0 148 1 1 2 1273155 0 genus Thiohalobacter 0 species Thiohalobacter thiocyanaticus 147 585455 1 family 0 Granulosicoccaceae 500 2 1 3 449719 Granulosicoccus genus 0 2 437504 1 15 498 0 species Granulosicoccus antarcticus 483 1 437505 0 family Woeseiaceae 1 1738654 2 106 1 genus 0 1 1738655 105 1548547 1 105 0 species Woeseia oceani 0 family Ectothiorhodospiraceae 1 72276 16 1493 8 Acidihalobacter 0 genus 1 307 2 1765964 1 306 160660 1 species 0 Acidihalobacter prosperus Alkalilimnicola genus 0 133193 2 1 1 95 94 1 351052 Alkalilimnicola ehrlichii species 0 0 genus 724 106633 5 Thioalkalivibrio sulfidiphilus 0 species 310 1033854 1 0 species Thioalkalivibrio paradoxus 114 1 108010 129 1 186931 Thioalkalivibrio nitratireducens 0 species species 0 Thioalkalivibrio versutus 117 106634 1 0 no rank 1 2621013 54 54 1 396595 Thioalkalivibrio sp. K90mix 0 species 2 1335745 112 genus 0 Spiribacter curvatus species 0 1 1335757 74 1335746 1 38 Spiribacter salinus species 0 Ectothiorhodospira 0 genus 1 138 1051 2 1 0 no rank 137 1 2684909 Ectothiorhodospira sp. BSL-9 0 species 1 1442136 137 85108 2 1 1 109 Halorhodospira genus 0 0 species Halorhodospira halophila 1053 1 108 1 72273 33 15987 6 order 0 Thiotrichales 14 135616 1 9 10195 Piscirickettsiaceae family 0 0 genus Thiomicrospira 327 4 1 3 933 147268 1 146 Thiomicrospira cyclica species 0 1 92245 177 species 0 Thiomicrospira aerophila 40222 3 1 2 478 Methylophaga genus 0 245 754476 1 Methylophaga nitratireducenticrescens 0 species 231 754477 1 Methylophaga frappieri species 0 830 16 1 34067 4 genus 0 Cycloclasticus 0 no rank 2 2621467 519 278 728003 1 Cycloclasticus sp. PY97N 0 species 1 385025 241 0 species Cycloclasticus sp. P1 0 species Cycloclasticus zancles 295 1 1329899 186 1 28884 genus 0 Hydrogenovibrio crunogenus 0 species 186 39765 1 8365 1 1 2 1237 genus 0 Piscirickettsia Piscirickettsia salmonis species 0 8364 1 1238 2 908 4 135617 1 Thiotrichaceae family 0 genus 0 Beggiatoa 1 2 1021 267 2 265 288004 1 0 species Beggiatoa leptomitoformis 639 40751 1 genus 0 Thioploca ingrica 0 species 639 40754 1 Francisellaceae 0 family 34064 14 1 3 4878 0 genus 201 1869285 1 1 594679 201 Allofrancisella guangzhouensis species 0 Francisella genus 0 40 4674 262 12 1 122 954 1 Francisella persica species 0 412 1 28110 0 species Francisella philomiragia Francisella sp. TX077308 0 species 167 573569 1 1542390 1 221 0 species Francisella sp. CA97-1460 0 species Francisella noatunensis 342 1 657445 Francisella sp. TX077310 0 species 162 1 573570 0 species Francisella hispaniensis 622488 1 186 Francisella tularensis species 0 263 1 809 1 549298 1691 0 species Francisella halioticida 522 2610885 2 no rank 0 272 1 475375 0 species Francisella sp. MA067296 250 1547445 1 Francisella sp. FSC1006 0 species 13 118884 2237 0 no rank clade 0 280 1 198346 Candidatus Baumannia cicadellinicola 0 species 186490 1 280 32036 4 699 clade 0 230 1 410330 species 0 Calyptogena okutanii thioautotrophic gill symbiont Bathymodiolus septemdierum thioautotrophic gill symbiont 0 species 113267 1 203 1 266 2 1541743 1 Candidatus Ruthia 0 genus 386487 1 265 0 species Candidatus Ruthia magnifica 1 125 349742 2 1 Sedimenticola 0 genus 0 species Sedimenticola thiotaurini 1543721 1 124 153 1 1 1608298 2 genus 0 Thiolapillus species 0 Thiolapillus brandeum 1 1076588 152 670 3 1 3 655184 genus 0 Candidatus Thioglobus 434 1427364 1 0 species Candidatus Thioglobus singularis 1705394 1 233 Candidatus Thioglobus autotrophicus 0 species 1 1524249 310 genus 0 1 1249552 310 Pseudohongiella spirulinae 0 species 0 order 110 2 1934945 Immundisolibacteraceae family 0 2 1934946 1 2 110 0 genus 1934947 1 108 1 1810504 108 Immundisolibacter cernigliae species 0 1 135615 161 0 order 868 1 161 0 family 0 genus 869 1 161 species 0 Dichelobacter nodosus 161 870 1 phylum 0 200938 3 107 118001 3 1 2 107 Chrysiogenetes 0 class 0 order 105 189769 2 189770 2 105 family 0 105 1 1 393029 2 genus 0 Desulfurispirillum Desulfurispirillum indicum 0 species 936456 1 104 13 57723 1027 phylum 0 1562566 1 79 class 0 79 1 458032 genus 0 Chloracidobacterium thermophilum 0 species 1 458033 79 1 12 204432 948 2 0 class Acidobacteriia order 0 Acidobacteriales 827 3 1 9 204433 8 204434 1 4 824 Acidobacteriaceae family 0 658061 1 90 genus 0 Candidatus Koribacter versatilis 0 species 658062 1 90 Granulicella 0 genus 3 940557 1 3 242 940614 1 65 species 0 Granulicella mallensis Granulicella tundricola species 0 940615 1 174 167 392733 2 0 genus 80 1 392734 0 species Terriglobus roseus species 0 Terriglobus saanensis 870903 1 87 321 1 33973 genus 0 Acidobacterium capsulatum species 0 321 1 33075 0 order Solibacterales 1 332160 2 119 1 family 0 118 1 332161 0 genus 118 1 332162 1 332163 118 species 0 Candidatus Solibacter usitatus 1488 1783272 323407 clade 0 0 phylum 23 200795 2398 475962 2 127 class 0 0 order Caldilineales 127 1 1 475963 2 126 1 475964 0 family genus 0 233191 1 126 133453 1 126 species 0 Caldilinea aerophila 4 1382928 1174 0 class Ardenticatenales order 0 3 1174 4 1382929 1 1171 1 1 3 1382930 family 0 Ardenticatenaceae 1170 4 1 2 1988031 genus 0 Candidatus Promineofilum 1166 1806508 1 0 species Candidatus Promineofilum breve class 0 3 292625 206 order 0 3 292629 206 206 292628 3 family 0 0 genus 1 233189 55 55 167964 1 Anaerolinea thermophila species 0 1324991 1 31 no rank 0 1889813 1 31 Anaerolineaceae bacterium oral taxon 439 species 0 1 2019482 120 0 genus 120 1986204 1 0 species Brevefilum fermentans 189775 3 208 0 class subclass 0 176 85000 2 order 0 2 85001 176 176 255728 2 0 suborder Sphaerobacteraceae family 0 2 176 85002 2 1 genus 0 2056 1 174 species 0 Sphaerobacter thermophilus 174 2057 1 189776 1 32 0 order 0 family 32 1 189777 0 genus 499 1 32 1 500 32 0 species Thermomicrobium roseum class 0 7 32061 535 535 3 1 32064 7 order 0 Chloroflexales 4 1508594 221 0 suborder 0 family 4 1106 221 Chloroflexus genus 0 1 221 1107 4 1 100 50 1 2 1108 species 0 Chloroflexus aurantiacus 1 480224 50 0 strain Chloroflexus sp. Y-400-fl Chloroflexus aggregans 0 species 120 1 152260 0 suborder 311 1508595 2 family 0 311 1508635 2 genus 0 120961 2 311 131 2609473 1 0 no rank 131 357808 1 Roseiflexus sp. RS-1 0 species species 0 Roseiflexus castenholzii 1 120962 180 0 class 148 301297 4 2 1202465 107 order 0 107 2 1202464 family 0 0 genus 61434 2 107 0 species Dehalococcoides mccartyi 1 61435 98 0 no rank 1 237581 9 1 1522671 9 species 0 Dehalococcoides sp. UCH007 2 670486 41 genus 0 21 1839801 1 Dehalogenimonas formicexedens 0 species Dehalogenimonas lykanthroporepellens species 0 552810 1 20 1 544448 100 11034 1 phylum 0 Tenericutes 0 no rank 275 713063 2 1 1911684 142 Tenericutes bacterium MO-XQ species 0 1911683 1 133 Tenericutes bacterium MZ-XQ 0 species 31969 95 1 25 10610 Mollicutes 0 class 3139 5 1 186328 38 order 0 Entomoplasmatales 2246 23 2131 family 0 23 2132 1 21 2246 Spiroplasma 0 genus 99 1 315358 0 species Spiroplasma eriocheiris 1 2145 94 0 species Spiroplasma taiwanense Spiroplasma sabaudiense 0 species 68 1 216944 0 species Spiroplasma mirum 50 1 2144 Spiroplasma atrichopogonis species 0 1114980 1 50 1 2133 89 0 species Spiroplasma citri Spiroplasma apis species 0 80 2137 1 1 216942 213 0 species Spiroplasma litorale 216938 1 101 Spiroplasma helicoides species 0 133 1 216935 Spiroplasma culicicola species 0 species 0 Spiroplasma clarkii 92 1 2139 2136 1 59 Spiroplasma monobiae species 0 216933 1 88 0 species Spiroplasma chrysopicola 97 1 216934 Spiroplasma corruscae 0 species Spiroplasma syrphidicola 0 species 94 1 216945 216937 1 98 species 0 Spiroplasma floricola 216936 1 102 Spiroplasma diminutum species 0 362837 1 95 Spiroplasma cantharicola species 0 0 no rank 2637901 2 350 0 species Spiroplasma sp. NBRC 100390 1 1914410 176 Spiroplasma sp. TU-14 0 species 1 1898044 174 92 216946 1 Spiroplasma turonicum species 0 Spiroplasma kunkelii species 0 81 1 47834 14 33925 1 2 888 Entomoplasmataceae family 0 8 46239 1 8 618 Mesoplasma genus 0 46 138853 1 species 0 Mesoplasma lactucae 0 species Mesoplasma coleopterae 1 324078 72 species 0 Mesoplasma syrphidae 72 225999 1 213 2151 1 0 species Mesoplasma florum 2149 1 64 0 species Mesoplasma entomophilum Mesoplasma chauliocola species 0 1 216427 66 77 219745 1 Mesoplasma tabanidae 0 species Entomoplasma 0 genus 6 268 46238 5 1 73 215578 1 Entomoplasma somnilux 0 species Entomoplasma freundtii species 0 28 74700 1 species 0 Entomoplasma luminosum 75 214888 1 81459 1 86 Entomoplasma melaleucae 0 species 6700 70 1 2085 44 0 order Mycoplasmatales Mycoplasmataceae family 0 43 2092 1 16 6630 2767358 12 1076 0 genus 171284 1 113 Mycoplasma cynos species 0 Mycoplasma pullorum species 0 48003 1 95 2115 1 48 Mycoplasma fermentans 0 species 0 species Mycoplasma agalactiae 1 2110 84 Mycoplasma arginini species 0 2094 1 71 2109 1 62 Mycoplasma synoviae species 0 1 29555 90 0 species Mycoplasma canis 0 species Mycoplasma bovigenitalium 126 2112 1 29553 1 86 species 0 Mycoplasma bovirhinis 160 1 28903 species 0 Mycoplasma bovis Mycoplasma californicum 0 species 38 2113 1 species 0 Mycoplasma pulmonis 103 1 2107 5391 48 1 2093 27 genus 0 Mycoplasma Mycoplasma dispar 0 species 40 86660 1 Mycoplasma penetrans 0 species 116 28227 1 298 1 136241 Mycoplasma haemocanis 0 species Mycoplasma suis 0 species 68 1 57372 Mycoplasma wenyonii 0 species 65123 1 40 130 2098 1 Mycoplasma hominis 0 species 0 species Mycoplasma canadense 50 29554 1 100 2118 1 Mycoplasma mobile 0 species species 0 Mycoplasma flocculare 1 2128 70 1 2100 81 species 0 Mycoplasma hyorhinis Mycoplasma gallisepticum species 0 1 2096 214 0 species Mycoplasma putrefaciens 98 2123 1 29501 1 2089 Mycoplasma haemofelis species 0 1 2104 51 species 0 Mycoplasma pneumoniae 984991 1 299 species 0 Mycoplasma parvum 1 2097 42 Mycoplasma genitalium 0 species Mycoplasma hyopneumoniae species 0 663 2099 1 species 0 Mycoplasma bovoculi 144 1 45362 species 0 Mycoplasma arthritidis 1 2111 30 116 1 51365 0 species Mycoplasma yeatsii 171632 1 44 species 0 Mycoplasma ovis 0 species group 3 656088 445 0 species Mycoplasma leachii 107 1 2105 1 2095 131 species 0 Mycoplasma capricolum 1 2102 207 0 species Mycoplasma mycoides 1 50052 76 Mycoplasma crocodyli species 0 no rank 0 1 2683645 39 1749074 1 39 Mycoplasma sp. (ex Biomphalaria glabrata) species 0 1 147 3 2129 1 Ureaplasma 0 genus 87 134821 1 species 0 Ureaplasma parvum 59 2130 1 Ureaplasma urealyticum species 0 0 order 186329 12 746 12 2146 1 2 746 Acholeplasmataceae family 0 Candidatus Phytoplasma 0 genus 33926 6 1 9 343 0 species group 217 85620 3 1 229545 70 species 0 Aster yellows witches'-broom phytoplasma 71 1 100379 Onion yellows phytoplasma species 0 Maize bushy stunt phytoplasma 0 species 76 202462 1 57 85632 1 0 species group Candidatus Phytoplasma australiense species 0 59748 1 57 1 85630 60 species group 0 Candidatus Phytoplasma mali species 0 60 37692 1 5 2147 1 5 401 Acholeplasma genus 0 2148 1 91 Acholeplasma laidlawii 0 species 1 38986 113 0 species Acholeplasma palmae 1 35623 125 Acholeplasma oculi species 0 0 species Acholeplasma brassicae 1 61635 67 no rank 0 2799557 2 148 genus 0 Candidatus Izimaplasma 148 2 1 1912503 2 no rank 0 2624196 1 146 1541959 1 146 0 species Candidatus Izimaplasma sp. HR1 201174 559 142397 phylum 0 class 0 128 2 84995 2 84996 128 order 0 2 84997 128 0 family 0 genus 128 2 42255 Rubrobacter radiotolerans species 0 1 42256 56 72 49319 1 species 0 Rubrobacter xylanophilus 0 class 2970 1497346 1 1 588673 2970 order 0 0 family 320583 1 2970 1 191494 2970 0 genus 1 191495 2970 Conexibacter woesei species 0 class 0 3 84992 554 554 8 1 3 84993 0 order Acidimicrobiales 84994 1 389 family 0 genus 0 1 53634 389 53635 1 389 species 0 Acidimicrobium ferrooxidans 157 2448023 1 family 0 0 genus 682522 1 157 157 467094 1 0 species Ilumatobacter coccineus no rank 0 236 4 1752188 Actinobacteria bacterium IMCC26077 species 0 1848755 1 34 1848255 1 42 Actinobacteria bacterium IMCC25003 species 0 0 species Actinobacteria bacterium IMCC26103 1 1848756 39 1 1848754 121 Actinobacteria bacterium IMCC19121 0 species 0 class Actinobacteria 1 1760 528 137495 385 85014 1 160 0 order 0 family 1 85034 160 0 genus 1 283810 160 species 0 Stackebrandtia nassauensis 160 283811 1 order 0 Kineosporiales 1 2 622452 197 3 0 family 1 83778 194 194 1 33981 genus 0 0 species Kineococcus radiotolerans 131568 1 194 112 1643818 1 0 no rank 147067 1 112 genus 0 Thermobispora bispora 0 species 2006 1 112 Pseudonocardiales order 0 7 7146 85010 34 1 1 33 2070 7139 17 family 0 Pseudonocardiaceae 0 genus 1 142577 147 Prauserella marina 0 species 147 1 530584 Pseudonocardia genus 0 8 1847 1 19 2291 Pseudonocardia dioxanivorans 0 species 1 240495 241 0 no rank 6 2619320 2031 1096856 1 177 species 0 Pseudonocardia sp. EC080619-01 1690815 1 1018 Pseudonocardia sp. HH130630-07 0 species 154 1096868 1 species 0 Pseudonocardia sp. EC080625-04 1 1688404 246 Pseudonocardia sp. EC080610-09 species 0 445576 1 232 0 species Pseudonocardia sp. AL041005-10 species 0 Pseudonocardia sp. HH130629-09 204 1 1641402 236 1 165301 genus 0 Lentzea guizhouensis species 0 1586287 1 236 1835 1 217 genus 0 217 1 1836 Saccharopolyspora erythraea 0 species 1 674734 200 genus 0 2636053 1 200 0 no rank Alloactinosynnema sp. L-07 0 species 1 1653480 200 Actinoalloteichus 0 genus 5 1290 6 65496 1 Actinoalloteichus sp. ADI127-7 0 species 405 1612552 1 1 340345 81 Actinoalloteichus hymeniacidonis 0 species 583 2644606 2 0 no rank Actinoalloteichus sp. GBA129-24 0 species 1 1612551 409 species 0 Actinoalloteichus sp. AHMU CJ021 174 1 2072503 0 species Actinoalloteichus hoggarensis 1 1470176 216 7 1813 1 6 1279 Amycolatopsis genus 0 Amycolatopsis methanolica species 0 1814 1 150 316 33910 1 Amycolatopsis mediterranei species 0 163 1 208439 0 species Amycolatopsis japonica 0 no rank 2618356 2 353 1 1896961 142 Amycolatopsis sp. AA4 0 species Amycolatopsis sp. BJA-103 species 0 1 1911175 211 Amycolatopsis orientalis 0 species 291 1 31958 1 1851 93 0 genus 1852 1 93 0 species Saccharomonospora viridis 0 genus 272 1 2029 272 1 860235 0 species Kibdelosporangium phytohabitans 671 5 1 3 40566 genus 0 Actinosynnema 0 species Actinosynnema pretiosum 1 42197 368 1 40567 298 0 species Actinosynnema mirum 267 1 2071 genus 0 0 species Saccharothrix espanaensis 1 103731 267 43356 1 159 0 genus species 0 Kutzneria albida 159 43357 1 Candidatus Nanopelagicales order 0 1 574 11 2039638 1 2162846 10 573 0 family 7 622681 1 1 321 Candidatus Planktophila genus 0 82 1 1884913 species 0 Candidatus Planktophila lacus 1884907 1 40 species 0 Candidatus Planktophila vernalis 1 1884904 21 Candidatus Planktophila sulfonica 0 species 1 1884905 60 species 0 Candidatus Planktophila versatilis 66 1 573600 0 species Candidatus Planktophila limnetica species 0 Candidatus Planktophila dulcis 51 1884914 1 252 3 2039639 0 genus 0 species Candidatus Nanopelagicus hibericus 1 1884915 82 0 species Candidatus Nanopelagicus abundans 1 1884916 114 56 1 1884634 Candidatus Nanopelagicus limnes 0 species 0 order Corynebacteriales 1 154 85007 28042 108 family 0 Corynebacteriaceae 1 1653 52 8996 12 8984 91 1 1716 51 0 genus Corynebacterium 1 35755 47 Corynebacterium kutscheri 0 species 1 1404244 61 species 0 Corynebacterium glyciniphilum 40 1 1705 Corynebacterium stationis species 0 Corynebacterium mustelae 0 species 1 571915 30 Corynebacterium aurimucosum species 0 61 1 169292 species 0 Corynebacterium efficiens 152794 1 45 species 0 Corynebacterium marinum 109 1 349751 Corynebacterium atypicum 0 species 191610 1 19 65058 1 72 Corynebacterium ulcerans species 0 Corynebacterium argentoratense 0 species 74 42817 1 species 0 Corynebacterium singulare 68 1 161899 Corynebacterium vitaeruminis species 0 127 38305 1 1 575200 67 Corynebacterium maris 0 species 1 1721 53 Corynebacterium callunae 0 species species 0 Corynebacterium glaucum 73 1 187491 1 401472 30 Corynebacterium ureicelerivorans species 0 92706 1 74 0 species [Brevibacterium] flavum 62 1 1408191 0 species Corynebacterium deserti 38 1 1050174 species 0 Corynebacterium epidermidicanis 0 species Corynebacterium falsenii 1 108486 107 Corynebacterium crudilactis 0 species 1652495 1 47 1719 1 139 Corynebacterium pseudotuberculosis 0 species 1 191493 101 species 0 Corynebacterium sphenisci 89154 1 170 species 0 Corynebacterium terpenotabidum Corynebacterium jeikeium species 0 38289 1 101 160 43770 1 Corynebacterium striatum species 0 species 0 Corynebacterium aquilae 164 203263 1 0 species Corynebacterium cystitidis 1 35757 177 Corynebacterium casei 0 species 1 160386 55 49 1 1231000 Corynebacterium lactis 0 species Corynebacterium variabile species 0 124 1727 1 species 0 Corynebacterium testudinoris 1 136857 146 species 0 Corynebacterium diphtheriae 1717 1 92 species 0 Corynebacterium frankenforstense 98 1230998 1 Corynebacterium urealyticum species 0 65 1 43771 Corynebacterium camporealensis 0 species 161896 1 36 species 0 Corynebacterium phocae 83 161895 1 Corynebacterium simulans 0 species 146827 1 68 0 species Corynebacterium resistens 36 1 258224 1 28028 75 0 species Corynebacterium flavescens Corynebacterium doosanense 0 species 1 1121358 81 Corynebacterium uterequi 0 species 1 1072256 4691 0 species Corynebacterium humireducens 1 1223514 129 species 0 Corynebacterium kroppenstedtii 36 1 161879 295 2624378 2 0 no rank Corynebacterium sp. NML98-0116 species 0 702967 1 263 1487956 1 32 Corynebacterium sp. ATCC 6931 0 species Corynebacterium ammoniagenes species 0 41 1697 1 47 156978 1 species 0 Corynebacterium imitans Corynebacterium glutamicum species 0 199 1 1718 Corynebacterium halotolerans species 0 131 225326 1 family 0 Mycobacteriaceae 1 1762 56 8893 14 97 697025 1 0 genus 97 1 639313 0 species Hoyosella subflava genus 0 1866885 13 1702 Mycobacterium aurum species 0 1791 1 218 166 110539 1 species 0 Mycobacterium vanbaalenii 0 species Mycobacterium thermoresistibile 1797 1 72 1 1772 123 Mycobacterium smegmatis species 0 species 0 Mycobacterium chubuense 1800 1 119 Mycobacterium litorale species 0 758802 1 100 1771 1 170 0 species Mycobacterium phlei 1810 1 107 species 0 Mycobacterium vaccae Mycobacterium fortuitum 0 species 124 1 1766 121 134601 1 Mycobacterium goodii species 0 78 36814 1 Mycobacterium rhodesiae species 0 238 1804 1 Mycobacterium gilvum species 0 66 1 1795 species 0 Mycobacterium neoaurum 163 5305 34 1763 1 Mycobacterium genus 0 Mycobacterium leprae 0 species 43 1769 1 0 species group 2249310 1 111 0 species Mycobacterium shigaense 722731 1 111 91 29311 1 0 species Mycobacterium haemophilum 4 77643 684 species group 0 Mycobacterium tuberculosis species 0 205 574 3 1773 1 0 biotype Mycobacterium bovis 1765 1 188 Mycobacterium africanum biotype 0 181 1 33894 78331 1 110 Mycobacterium canettii 0 species 1707 120793 8 species group 0 73 701042 1 Mycobacterium marseillense species 0 Mycobacterium avium 0 species 1 1764 962 Mycobacterium intracellulare 0 species 1767 4 1 246 506 1203599 1 69 Mycobacterium yongonense 0 subspecies Mycobacterium indicus pranii 0 subspecies 35617 1 30 222805 1 161 subspecies 0 Mycobacterium chimaera 339268 1 122 Mycobacterium colombiense 0 species Mycobacterium paraintracellulare species 0 44 1138383 1 198 1 482462 0 species Mycobacterium dioxanotrophicus 158 1 1768 species 0 Mycobacterium kansasii Mycobacterium marinum 0 species 1 1781 434 Mycobacterium ulcerans 0 species 129 1809 1 2642494 13 1374 no rank 0 0 species Mycobacterium sp. QIA-37 60 1561223 1 164756 1 111 0 species Mycobacterium sp. MCS 98 164757 1 Mycobacterium sp. JLS species 0 1 1570328 66 Mycobacterium sp. NRRL B-3805 species 0 1 189918 117 species 0 Mycobacterium sp. KMS 1 212767 183 Mycobacterium sp. JS623 species 0 117 1 1682113 species 0 Mycobacterium sp. YC-RL4 Mycobacterium sp. EPa45 species 0 100 1545728 1 species 0 Mycobacterium sp. PYR15 133 1 2051552 1879023 1 128 species 0 Mycobacterium sp. djl-10 species 0 Mycobacterium sp. VKM Ac-1817D 1 1273687 128 1920667 1 97 species 0 Mycobacterium sp. WY10 Mycobacterium sp. MOTT36Y 0 species 36 1 1168287 1 261524 213 Mycobacterium liflandii 0 species 0 genus 2 1073531 340 species 0 Mycobacterium terrae 162 1 1788 Mycobacterium sinense 0 species 178 875328 1 genus 0 1435 5 670516 97 1 1578165 0 species Mycobacterium saopaulense species 0 Mycobacterium chelonae 300 1774 1 1 83262 591 Mycobacterium immunogenum species 0 395 1 36809 species 0 Mycobacterium abscessus species 0 Mycobacterium stephanolepidis 1 1520670 52 0 family 316606 1 46 46 286801 1 genus 0 46 1 286802 species 0 Segniliparus rotundus 85028 2 2927 family 0 genus 0 2927 2 2060 851 2061 1 Tsukamurella paurometabola species 0 2076 57704 1 Tsukamurella tyrosinosolvens 0 species 0 family 85029 2 200 genus 0 37914 2 200 no rank 0 132 1 2617939 712270 1 132 Dietzia sp. oral taxon 368 species 0 Dietzia timorensis species 0 499555 1 68 0 family Nocardiaceae 1 85025 31 6082 14 genus 0 Nocardia 1 7 1817 1365 11 0 species Nocardia nova 37330 1 163 1 135487 273 0 species Nocardia cyriacigeorgica 179 37329 1 species 0 Nocardia farcinica species 0 Nocardia terpenica 172 455432 1 Nocardia brasiliensis 0 species 1 37326 404 Nocardia seriolae species 0 37332 1 163 genus 0 Rhodococcus 4703 45 1 1827 23 1 1828 125 Rhodococcus fascians species 0 706 37919 1 Rhodococcus opacus 0 species 0 species Rhodococcus hoagii 43767 1 98 1833 1 470 species 0 Rhodococcus erythropolis 1 1829 102 species 0 Rhodococcus rhodochrous Rhodococcus jostii 0 species 244 132919 1 0 species Rhodococcus qingshengii 1 334542 1073 no rank 0 1300 12 192944 1727214 1 80 species 0 Rhodococcus sp. H-CA8f 0 species Rhodococcus sp. B7740 95 1 1564114 161 935199 1 Rhodococcus sp. p52 0 species 166 1033922 1 0 species Rhodococcus sp. WB1 1 1805827 284 Rhodococcus sp. MTM3W5.2 species 0 Rhodococcus sp. PBTS 2 species 0 1 1653479 92 Rhodococcus sp. WMMA185 species 0 679318 1 57 1 1570939 85 Rhodococcus sp. 2G 0 species 54 1807790 1 Rhodococcus sp. BH4 species 0 Rhodococcus sp. YL-1 species 0 1045808 1 68 1 1653478 90 0 species Rhodococcus sp. PBTS 1 68 1723645 1 Rhodococcus sp. 008 0 species Rhodococcus ruber species 0 1830 1 167 Rhodococcus pyridinivorans 0 species 103816 1 200 191292 1 173 species 0 Rhodococcus aetherivorans no rank 0 1 697024 46 1 1847725 46 genus 0 1 1528099 46 Lawsonella clevelandensis 0 species 0 family 8 85026 744 Gordonia 0 genus 7 744 8 2053 1 species 0 Gordonia iterans 1 1004901 98 0 no rank 221 2657482 2 species 0 Gordonia sp. YC-JH1 1 2059875 87 0 species Gordonia sp. KTR9 337191 1 134 0 species Gordonia polyisoprenivorans 84595 1 90 2054 1 139 Gordonia bronchialis species 0 2055 1 103 0 species Gordonia terrae 0 species Gordonia phthalatica 86 1136941 1 0 order 156 1643684 3 family 0 Nakamurellaceae 156 1 1 3 85031 155 1 1 2 53460 0 genus Nakamurella Nakamurella multipartita 0 species 1 53461 154 0 order 931 2037 15 Actinomycetaceae 0 family 2 931 2049 15 1 28263 1 28 genus 0 Arcanobacterium haemolyticum species 0 28264 1 28 genus 0 1 1653174 48 59505 1 48 Actinotignum schaalii species 0 genus 0 21 1069494 1 21 1661 1 0 species Trueperella pyogenes 686 20 1 1654 9 genus 0 Actinomyces 1912795 1 62 species 0 Actinomyces sp. VUL4_3 0 species Actinomyces gaoshouyii 1 1960083 96 Actinomyces oris 0 species 58 544580 1 22 1852377 1 Actinomyces pacaensis 0 species species 0 Actinomyces radicidentis 89 111015 1 339 3 2609248 no rank 0 2081702 1 106 Actinomyces sp. oral taxon 897 0 species 1 1851395 87 Actinomyces sp. Chiba101 0 species Actinomyces sp. oral taxon 414 species 0 146 712122 1 0 genus 2529408 1 55 55 52773 1 species 0 Actinomyces meyeri 2050 1 91 genus 0 0 species Mobiluncus curtisii 1 2051 91 0 order Catenulisporales 1 4 414714 6409 22 Catenulisporaceae family 0 13 6387 414877 3 1 1 2 414878 6374 6 0 genus Catenulispora 6368 304895 1 Catenulispora acidiphila 0 species 1 52018 50 no rank 0 1650658 1 50 0 species Actinobacteria bacterium IMCC26256 order 0 493 5 1643682 0 family Geodermatophilaceae 1 85030 5 493 2 genus 0 175 1860 1 175 1 1861 species 0 Geodermatophilus obscurus 168 1 88138 genus 0 Modestobacter marinus species 0 168 1 477641 1 2 38501 148 4 genus 0 Blastococcus 0 species Blastococcus saxobsidens 144 1 138336 78 22381 85006 122 1 Micrococcales order 0 1 8 85017 851 2 0 family Promicromonosporaceae 2 255 186188 2 1 Xylanimonas 0 genus 253 1 186189 species 0 Xylanimonas cellulosilytica 259 254250 2 genus 0 0 species Isoptericola dokdonensis 372663 1 159 species 0 Isoptericola variabilis 1 139208 100 Cellulosimicrobium 0 genus 1 335 3 157920 1 137 1710 1 species 0 Cellulosimicrobium cellulans no rank 0 197 2624466 1 Cellulosimicrobium sp. TH-20 species 0 197 1980001 1 7486 11 1 85023 43 family 0 Microbacteriaceae 10 478 2034 4 1 Curtobacterium 0 genus 69373 1 140 0 species Curtobacterium pusillum 328 2 257496 0 no rank Curtobacterium sp. BH-2-1-1 species 0 1 1905847 91 Curtobacterium sp. MR_MD2014 0 species 237 1561023 1 1 14 33882 1253 15 genus 0 Microbacterium 1 300019 122 species 0 Microbacterium paludicola Microbacterium testaceum 0 species 2033 1 105 78 36805 1 Microbacterium aurum 0 species 54 84292 1 Microbacterium chocolatum species 0 162426 1 114 Microbacterium hominis species 0 no rank 0 8 2609290 765 species 0 Microbacterium sp. TPU 3598 1938334 1 75 83 1 2103230 Microbacterium sp. str. 'China' species 0 0 species Microbacterium sp. BH-3-3-3 1 1906742 99 1 367477 75 Microbacterium sp. XT11 0 species 1 1696072 122 0 species Microbacterium sp. CGR1 species 0 Microbacterium sp. No. 7 153 1714373 1 species 0 Microbacterium sp. PAMC 28756 90 1795053 1 1 1916917 68 Microbacterium sp. 1.5R species 0 230 1 1 33886 3 0 genus Rathayibacter Rathayibacter tritici 0 species 1 33888 118 145458 1 111 species 0 Rathayibacter toxicus 447237 1 3506 0 genus 0 no rank 1 2626248 3506 species 0 Frondihabitans sp. PAMC 28766 3506 1795630 1 0 genus 1 1705353 29 1 708131 29 Aurantimicrobium minutum species 0 69578 2 207 0 genus 2649013 1 105 0 no rank species 0 Cryobacterium sp. LW097 1978566 1 105 species 0 Cryobacterium arcticum 670052 1 102 0 genus 239 110932 1 Leifsonia xyli 0 species 1575 1 239 no rank 0 121 3 1655488 1655489 3 121 clade 0 genus 0 Rhodoluna 1 3 529883 121 1 0 species Candidatus Rhodoluna planktonica 81 1 535712 529884 1 39 Rhodoluna lacicola species 0 52 1 337004 genus 0 0 species Microcella alkaliphila 52 279828 1 genus 0 Clavibacter 950 6 1 6 1573 5 28447 1 121 944 Clavibacter michiganensis species 0 0 subspecies Clavibacter insidiosus 74 33014 1 subspecies 0 Clavibacter nebraskensis 1 31963 96 1874630 1 108 0 subspecies Clavibacter capsici 0 subspecies Clavibacter sepedonicus 545 1 31964 genus 0 125 1 1759331 Cnuibacter physcomitrellae species 0 1 1619308 125 0 genus 1434032 1 34 34 1159327 1 0 species Pontimonas salivibrio 0 genus Microterricola 81 1 1 2 518733 80 1 412690 Microterricola viridarii species 0 Agromyces 0 genus 2 170 2 33877 1 1 453304 168 Agromyces aureus species 0 Brevibacteriaceae 0 family 6 213 85019 2 1 1696 1 207 0 genus 0 species Brevibacterium linens 1 1703 207 1 1268 35 10793 20 family 0 Micrococcaceae genus 0 Pseudarthrobacter 1 4 1742993 1311 1 361575 1 1122 Pseudarthrobacter phenanthrenivorans species 0 105 121292 1 Pseudarthrobacter sulfonivorans species 0 Pseudarthrobacter chlorophenolicus 0 species 83 85085 1 87 1269 1 0 genus 87 1270 1 0 species Micrococcus luteus 1645 1 41 0 genus 1 1646 41 0 species Renibacterium salmoninarum genus 0 Kocuria 243 2 1 4 57493 81 71999 1 0 species Kocuria palustris 1 446860 99 0 species Kocuria flava Kocuria rhizophila 0 species 61 72000 1 32 8200 1663 15 1 Arthrobacter 0 genus species 0 Arthrobacter crystallopoietes 1 37928 85 0 no rank 7749 12 235627 459 1 1704044 Arthrobacter sp. ERGS1:01 0 species 65 2020486 1 0 species Arthrobacter sp. YN 0 species Arthrobacter sp. U41 1849032 1 100 Arthrobacter sp. PGP41 0 species 1 2079227 6491 species 0 Arthrobacter sp. QXT-31 88 1 1357915 159 1 1494608 0 species Arthrobacter sp. PAMC 25486 Arthrobacter sp. LS16 0 species 1 1690248 57 Arthrobacter sp. ATCC 21022 species 0 60 1 1771959 1806905 1 76 0 species Arthrobacter sp. ZXY-2 1652545 1 62 Arthrobacter sp. YC-RL1 0 species 290399 1 74 Arthrobacter sp. FB24 species 0 1 1118963 58 0 species Arthrobacter sp. Rue61a 0 species Arthrobacter alpinus 334 1 656366 1868332 1 143 0 genus 143 1 556325 0 species Neomicrococcus aestuarii 0 genus 2078575 1 147 species 0 Arthrobacter sp. IHBB 11108 1 1618207 147 genus 0 Glutamicibacter 136 1 1 2 1742989 0 species Glutamicibacter arilaitensis 256701 1 135 102 1 1742992 0 genus 102 43663 1 species 0 Paenarthrobacter aurescens genus 0 Rothia 1 3 32207 146 1 0 species Rothia dentocariosa 40 1 2047 105 1 43675 0 species Rothia mucilaginosa 217 1 596707 0 genus species 0 Sinomonas atrocyanea 217 37927 1 85022 1 61 0 family 0 genus 61 43673 1 Jonesia denitrificans 0 species 1 43674 61 family 0 Dermabacteraceae 1130 5 1 10 85020 1 43668 6 736 3 0 genus Brachybacterium 0 no rank 154 2623841 1 154 1903186 1 0 species Brachybacterium sp. P6-10-X1 species 0 Brachybacterium faecium 148 43669 1 112 1 1331682 0 species Brachybacterium ginsengisoli Brachybacterium sp. VM2412 0 species 2017484 1 231 88 2017485 1 0 species Brachybacterium sp. VR2415 Devriesea 0 genus 3 353 2 472568 1 472569 1 350 Devriesea agamarum 0 species 1 36739 36 genus 0 0 species Dermabacter vaginalis 36 1630135 1 family 0 1 145360 209 209 60919 1 genus 0 0 species Sanguibacter keddieii 1 60920 209 no rank 0 27 577468 1 27 2038 1 genus 0 1 2039 27 0 species Tropheryma whipplei 6 85021 493 family 0 128 265976 1 0 genus 0 species Serinicoccus sp. JLT9 1758689 1 128 0 genus 267408 1 111 2663846 1 111 0 no rank species 0 Arsenicicoccus sp. oral taxon 190 111 1658671 1 53357 2 1 1 131 Intrasporangium 0 genus Intrasporangium calvum 0 species 53358 1 130 123 1 1 2 53457 genus 0 Janibacter 122 1 857417 0 species Janibacter indicus 2 85018 161 0 family genus 0 Dermatophilus 161 2 1 2 1862 species 0 Dermatophilus congolensis 159 1 1863 family 0 5 85016 424 3 424 5 1707 1 Cellulomonas 0 genus Cellulomonas fimi species 0 1 1708 104 2620175 1 105 no rank 0 0 species Cellulomonas sp. PSBB021 1 2003551 105 0 species Cellulomonas gilvus 11 1 84 0 species Cellulomonas flavigena 1711 1 128 3 335 145357 6 1 Dermacoccaceae 0 family 745364 1 101 0 genus 101 1 571913 0 species Luteipulveratus mongoliensis 0 genus Dermacoccus 1 57495 2 173 1 Dermacoccus nishinomiyaensis species 0 172 1274 1 1 58 57499 2 1 Kytococcus genus 0 Kytococcus sedentarius 0 species 1 1276 57 0 family 125316 1 120 0 genus 120 84756 1 Beutenbergia cavernae species 0 120 1 84757 1 7 85013 3301 27 0 order Frankiales 74712 6 1 6 3274 Frankiaceae 0 family 1 5 1854 3268 7 0 genus Frankia no rank 0 312 2632575 1 312 298653 1 species 0 Frankia sp. EAN1pec Frankia inefficax 0 species 298654 1 264 Frankia alni species 0 1859 1 612 2073 1 106370 Frankia casuarinae species 0 85004 25 1 4 2449 Bifidobacteriales 0 order 15 2445 31953 24 1 Bifidobacteriaceae family 0 0 genus 79 1 196081 species 0 Scardovia inopinata 78259 1 79 19 1678 1 13 2106 Bifidobacterium genus 0 Bifidobacterium catenulatum 0 species 2 1686 1 36 86 50 1 630129 0 subspecies Bifidobacterium kashiwanohense Bifidobacterium indicum species 0 47 1 1691 Bifidobacterium coryneforme 0 species 1687 1 44 Bifidobacterium actinocoloniiforme 0 species 1 638619 252 Bifidobacterium scardovii 0 species 158787 1 135 55 1684 1 Bifidobacterium asteroides species 0 82 1680 1 Bifidobacterium adolescentis species 0 species 0 Bifidobacterium bifidum 1 1681 199 79 1 1683 Bifidobacterium angulatum 0 species 459 1 216816 species 0 Bifidobacterium longum 1 1694 94 species 0 Bifidobacterium pseudolongum 0 species Bifidobacterium dentium 1689 1 70 1 35760 72 Bifidobacterium choerinum species 0 28026 1 55 species 0 Bifidobacterium pseudocatenulatum 1 28025 89 Bifidobacterium animalis 0 species 1685 1 204 species 0 Bifidobacterium breve 33905 1 71 Bifidobacterium thermophilum species 0 174 1 1 2701 2 0 genus Gardnerella 1 2702 173 species 0 Gardnerella vaginalis 0 genus 196082 1 71 1 78258 71 species 0 Parascardovia denticolens order 0 Micromonosporales 2933 3 1 85008 18 0 family Micromonosporaceae 2930 7 1 28056 17 2 168694 285 0 genus 1 168697 141 Salinispora arenicola species 0 144 168695 1 species 0 Salinispora tropica 0 genus Plantactinospora 1 4 673534 1001 5 0 no rank 996 2631981 3 1 2108470 187 0 species Plantactinospora sp. BC1 568 1 2071627 species 0 Plantactinospora sp. BB1 1 2024580 241 0 species Plantactinospora sp. KBS50 Micromonospora 0 genus 1 583 1873 4 1 1 2617518 206 0 no rank 206 648999 1 Micromonospora sp. L5 0 species 1 47850 233 species 0 Micromonospora aurantiaca 0 species Verrucosispora maris 143 1 1003110 0 genus Actinoplanes 1 1865 6 1054 8 225 1866 1 0 species Actinoplanes missouriensis Actinoplanes friuliensis species 0 1 196914 190 3 2626549 631 no rank 0 1 2033844 212 Actinoplanes sp. SE50 species 0 207 1 649831 Actinoplanes sp. N902-109 0 species Actinoplanes sp. SE50/110 0 species 212 1 134676 Streptomycetales order 0 109 57294 82 85011 1 1 81 2062 57185 68 0 family Streptomycetaceae Kitasatospora genus 0 5 2063 1 1 6703 1894 1 333 Kitasatospora aureofaciens 0 species 2633591 1 677 no rank 0 0 species Kitasatospora sp. MMS16-BH015 677 2018025 1 species 0 Kitasatospora albolonga 1 68173 4946 0 species Kitasatospora setae 746 1 2066 genus 0 Streptomyces 1 1883 75 50414 321 1888 1 733 Streptomyces albus species 0 species 0 Streptomyces alfalfae 1642299 1 309 species 0 Streptomyces puniciscabiei 1 164348 266 187 1935 1 Streptomyces violaceoruber 0 species 1 1940 305 species 0 Streptomyces albireticuli 1 1907 512 0 species Streptomyces glaucescens species group 0 461 2 629295 species subgroup 0 1 1482596 239 Streptomyces griseus 0 species 239 1911 1 species subgroup 0 1482558 1 222 222 1 1908 Streptomyces globisporus species 0 species 0 Streptomyces lydicus 2108 47763 1 Streptomyces collinus 0 species 387 42684 1 1 1926 267 Streptomyces reticuli 0 species 67267 1 343 species 0 Streptomyces alboflavus 54571 1 711 Streptomyces venezuelae 0 species 1206 379067 1 Streptomyces bingchenggensis species 0 215 1 29303 0 species Streptomyces cattleya Streptomyces autolyticus species 0 3345 1 75293 1783515 1 326 Streptomyces sp. S10(2016) 0 species 1901 1 450 species 0 Streptomyces clavuligerus 0 species Streptomyces formicae 536 1616117 1 363 1916 1 Streptomyces lividans 0 species 428 1 1971 Streptomyces noursei 0 species Streptomyces hygroscopicus 0 species 1460 1912 1 Streptomyces rubrolavendulae 0 species 242 285473 1 433 193462 1 species 0 Streptomyces niveus species 0 Streptomyces chartreusis 197 1969 1 1038928 1 450 0 species Streptomyces xinghaiensis 1 33903 718 Streptomyces avermitilis 0 species 1 1889 383 Streptomyces ambofaciens species 0 1 408015 187 Streptomyces xiamenensis species 0 460 68280 1 0 species Streptomyces violaceusniger Streptomyces albulus species 0 9399 68570 1 species 0 Streptomyces pactum 1050 68249 1 species 0 Streptomyces parvulus 317 146923 1 2049881 1 264 Streptomyces sp. XZHG99 0 species species 0 Streptomyces pratensis 1169025 1 164 341 1355015 1 Streptomyces pluripotens species 0 1 1950 173 species 0 Streptomyces peucetius 160 68192 1 species 0 Streptomyces cyaneogriseus no rank 0 24 2593676 12013 859 1 1972846 species 0 Streptomyces sp. Sge12 353 1837283 1 species 0 Streptomyces sp. S8 248 1 1561022 Streptomyces sp. CCM_MD2014 species 0 Streptomyces sp. 769 species 0 487 1262452 1 Streptomyces sp. fd1-xmd 0 species 1 1812480 979 species 0 Streptomyces sp. CLI2509 316 1984801 1 0 species Streptomyces sp. CFMR 7 1 1649184 300 1 234612 236 species 0 Streptomyces sp. TN58 0 species Streptomyces sp. CdTB01 871 1 1725411 0 species Streptomyces sp. SirexAA-E 203 862751 1 2059884 1 379 species 0 Streptomyces sp. CMB-StM0423 species 0 Streptomyces sp. Mg1 465541 1 529 1111 2135430 1 Streptomyces sp. P3 0 species 0 species Streptomyces sp. M56 1 1495638 843 975 1849967 1 Streptomyces sp. SAT1 0 species 0 species Streptomyces sp. FR-008 1 206662 763 0 species Streptomyces sp. MOE7 1 1961713 676 Streptomyces sp. PAMC 26508 0 species 172 1265601 1 Streptomyces sp. 3211 species 0 1964449 1 412 1 2094021 226 Streptomyces sp. WAC00288 0 species Streptomyces sp. CNQ-509 0 species 444103 1 280 271 1 1661694 0 species Streptomyces sp. Tue 6075 species 0 Streptomyces sp. 4F 1 1751294 234 290 1841249 1 Streptomyces sp. RTd22 species 0 species 0 Streptomyces vietnamensis 395 1 362257 Streptomyces malaysiensis species 0 1 92644 436 Streptomyces lincolnensis species 0 713 1 1915 species 0 Streptomyces leeuwenhoekii 1 1437453 238 species 0 Streptomyces lavendulae 582 1914 1 Streptomyces griseochromogenes 0 species 290 1 68214 1 1930 602 Streptomyces scabiei 0 species Streptomyces pristinaespiralis 0 species 1 38300 223 553510 1 324 Streptomyces gilvosporeus 0 species 4120 2 1477431 species group 0 species 0 Streptomyces coelicolor 3908 1 1902 42239 1 212 0 species Streptomyces sampsonii 0 species Streptomyces fulvissimus 301 1 68202 0 order 12 85012 1668 2012 2 1 1 126 Thermomonosporaceae 0 family 2019 1 125 genus 0 125 2020 1 Thermomonospora curvata species 0 5 957 4 2004 1 Streptosporangiaceae 0 family Streptosporangium genus 0 2 2000 1 3 411 species 0 Streptosporangium roseum 2001 1 408 541 1 83681 0 genus 2593643 1 541 0 no rank 541 1 1909395 0 species Nonomuraea sp. ATCC 55076 Nocardiopsaceae 0 family 6 83676 1 2 585 Nocardiopsis 0 genus 4 519 4 2013 1 1 53437 141 0 species Nocardiopsis alba species 0 Nocardiopsis gilva 280236 1 145 2014 1 229 Nocardiopsis dassonvillei 0 species 1 83677 64 genus 0 2021 1 64 Thermobifida fusca species 0 1 622450 103 order 0 family 0 622451 1 103 103 1 1849 0 genus 0 species Actinopolyspora erythraea 1 414996 103 order 0 35 1 1643683 85032 1 35 0 family 28048 1 35 genus 0 28049 1 35 Acidothermus cellulolyticus 0 species 0 order Propionibacteriales 2676 20 1 28 85009 family 0 1682 31957 16 1743 3 1 2 877 Propionibacterium genus 0 47 2608905 1 0 no rank 0 species Propionibacterium sp. oral taxon 193 47 671223 1 1744 1 828 species 0 Propionibacterium freudenreichii 65 2801844 1 0 genus Pseudopropionibacterium propionicum 0 species 65 1750 1 genus 0 45 1 203133 0 no rank 1 2633994 45 0 species Propionimicrobium sp. Marseille-P3275 45 1 1871034 293 72763 4 genus 0 2635419 1 87 no rank 0 species 0 Tessaracoccus sp. T2.5-30 87 1 1909732 species 0 Tessaracoccus flavescens 399497 1 52 49 1610493 1 Tessaracoccus flavus species 0 105 1332264 1 Tessaracoccus aquimaris 0 species 1912215 1 125 0 genus 1748 1 125 0 species Acidipropionibacterium acidipropionici 84 2 1 29404 2 genus 0 Microlunatus Microlunatus phosphovorus 0 species 82 29405 1 1 4 1912216 193 4 genus 0 Cutibacterium 0 species Cutibacterium granulosum 43 1 33011 Cutibacterium acnes species 0 1747 1 74 1 33010 72 0 species Cutibacterium avidum Nocardioidaceae 0 family 85015 11 1 2 974 genus 0 116071 1 57 75385 1 57 Micropruina glycogenica 0 species 1 2 2044 176 1 0 genus Pimelobacter 1 2045 175 species 0 Pimelobacter simplex Aeromicrobium genus 0 1 110 2040 2 1 Aeromicrobium erythreum 0 species 109 2041 1 Nocardioides genus 0 1839 4 1 31 499 no rank 0 115 1 2615069 115 196162 1 species 0 Nocardioides sp. JS614 1 450734 246 0 species Nocardioides dokdonensis 2045452 1 107 species 0 Nocardioides sp. 78 0 genus 130 182639 1 130 182640 1 0 species Kribbella flavida 1 21 84998 1014 7 0 class Coriobacteriia 1 1643822 12 654 3 order 0 Eggerthellales 11 1643826 651 0 family genus 0 213 84111 2 Eggerthella lenta species 0 139 84112 1 no rank 0 74 2648737 1 1 502558 74 Eggerthella sp. YY7918 species 0 0 genus 53 1 84162 53 84163 1 0 species Cryptobacterium curtum 76 1 1 2 1981050 0 genus Phoenicibacter 1 1944646 75 species 0 Phoenicibacter massiliensis 0 genus 1 447020 47 Adlercreutzia equolifaciens species 0 1 446660 47 24 79603 1 0 genus 0 species Denitrobacterium detoxificans 24 79604 1 0 genus 46 1 84108 species 0 Slackia heliotrinireducens 84110 1 46 644652 3 1 1 192 Gordonibacter 0 genus species 0 Gordonibacter massiliensis 101 1 1841863 0 species Gordonibacter urolithinfaciens 90 1 1335613 8 84999 353 order 0 family 0 Atopobiaceae 247 1 1 5 1643824 2767353 1 29 0 genus 1 1382 29 0 species Atopobium parvulum 133925 3 217 genus 0 64 1 1805478 species 0 Olsenella sp. Marseille-P2300 0 no rank 115 2638792 1 1 712411 115 Olsenella sp. oral taxon 807 species 0 species 0 Olsenella uli 133926 1 38 106 3 84107 0 family 35 102106 1 genus 0 Collinsella aerofaciens species 0 35 1 74426 43 84113 1 0 no rank 43 1 1531429 Coriobacteriaceae bacterium 68-1-3 species 0 33870 1 28 genus 0 28 1 33871 Coriobacterium glomerans species 0 1297 31 2631 0 phylum Deinococci 0 class 13 2631 31 188787 1 2762275 1 75 0 order 75 1 332247 0 family genus 0 1 332248 75 species 0 Truepera radiovictrix 1 332249 75 15 118964 1 9 1599 Deinococcales order 0 12 1590 14 183710 1 Deinococcaceae 0 family 11 1578 1298 13 1 Deinococcus genus 0 Deinococcus radiodurans 0 species 83 1 1299 Deinococcus peraridilitoris 0 species 1 432329 92 Deinococcus proteolyticus species 0 656 55148 1 Deinococcus geothermalis species 0 88 68909 1 0 species Deinococcus deserti 1 310783 40 0 no rank 74 2623546 1 74 1 2080419 Deinococcus sp. NW-56 0 species 0 species Deinococcus puniceus 69 1 1182568 species 0 Deinococcus maricopensis 1 309887 91 94 1 1309411 species 0 Deinococcus soli Cha et al. 2016 0 species Deinococcus actinosclerus 1768108 1 79 Deinococcus swuensis 0 species 1 1182571 105 Deinococcus gobiensis 0 species 1 502394 96 Thermales 0 order 68933 14 1 6 944 Thermaceae 0 family 3 938 188786 13 1 genus 0 40 186191 1 40 1 186192 Marinithermus hydrothermalis 0 species 1 8 270 670 2 genus 0 Thermus 1 456163 91 0 species Thermus parvatiensis 40 37636 1 Thermus scotoductus species 0 274 1 227 Thermus thermophilus 0 species Thermus brockianus species 0 83 56956 1 105 1 271 Thermus aquaticus 0 species Thermus oshimai species 0 56957 1 55 2619321 1 67 no rank 0 67 1111069 1 Thermus sp. CCB_US3_UF1 0 species 144 2 65551 genus 0 0 species Meiothermus ruber 277 1 90 0 species Meiothermus silvanus 1 52022 54 genus 0 208447 1 81 Oceanithermus profundus species 0 1 187137 81 no rank 0 1859062 1 48 48 1 262406 genus 0 48 166501 1 Thermobaculum terrenum species 0 12 124932 1239 622 1 Firmicutes 0 phylum class 0 Bacilli 75132 92 1 91061 404 55629 103 1 243 1385 order 0 Bacillales family 0 186821 1 81 1 663587 81 0 no rank [Bacillus] selenitireducens species 0 81 85683 1 8 539002 362 0 no rank no rank 0 100 1 539738 0 genus 1378 1 100 0 no rank 100 2624949 1 0 species Gemella sp. oral taxon 928 100 1785995 1 262 539742 7 no rank 0 7 33986 1 5 262 Exiguobacterium genus 0 species 0 Exiguobacterium sibiricum 1 332410 40 Exiguobacterium antarcticum 0 species 1 132920 31 2644629 4 186 0 no rank 35 1399115 1 0 species Exiguobacterium sp. MH3 1224749 1 51 Exiguobacterium sp. ZWU0009 species 0 59 1849031 1 Exiguobacterium sp. U13-1 species 0 360911 1 41 Exiguobacterium sp. AT1b 0 species Alicyclobacillaceae 0 family 186823 7 1 9 1391 4 1043 3 432330 1 Tumebacillus genus 0 Tumebacillus avium 0 species 975 1 1903704 Tumebacillus algifaecis species 0 1 1214604 64 0 genus 92 1 29330 Alicyclobacillus acidocaldarius species 0 92 1 405212 genus 0 247 1129704 2 Kyrpidia tusciae 0 species 147 33943 1 Kyrpidia sp. EA-1 species 0 100 2055160 1 Paenibacillaceae family 0 43 186822 1 15 16229 3 55080 865 0 genus 1 1465 416 species 0 Brevibacillus laterosporus Brevibacillus formosus species 0 192 1 54913 1 1393 257 species 0 Brevibacillus brevis no rank 0 270 2 85151 270 2 55079 genus 0 Aneurinibacillus soli 0 species 1 1500254 208 62 1 2642329 0 no rank 62 1450761 1 0 species Aneurinibacillus sp. XH2 0 genus 1 76632 62 62 1 377615 Thermobacillus composti species 0 15017 43 1 44249 36 0 genus Paenibacillus 106 1763538 1 Paenibacillus crassostreae 0 species Paenibacillus ihbetae 0 species 1 1870820 151 109 1462996 1 Paenibacillus yonginensis species 0 species 0 Paenibacillus terrae 195 159743 1 Paenibacillus odorifer 0 species 189426 1 369 1 189425 1803 Paenibacillus graminis species 0 1096 1616788 1 Paenibacillus bovis 0 species Paenibacillus xylanexedens 0 species 119 528191 1 164 1464 1 Paenibacillus larvae species 0 Paenibacillus beijingensis species 0 75 1 1126833 1178515 1 111 0 species Paenibacillus swuensis 1569 1 44251 species 0 Paenibacillus durus 1406 1 1611 Paenibacillus polymyxa 0 species Paenibacillus kribbensis 0 species 172713 1 123 Paenibacillus naphthalenovorans 0 species 67 1 162209 3708 13 185978 no rank 0 0 species Paenibacillus sp. IHBB 10380 300 1566358 1 269 1536775 1 species 0 Paenibacillus sp. FSL H7-0737 1 1536774 353 species 0 Paenibacillus sp. FSL H7-0357 372 1870819 1 0 species Paenibacillus sp. BIHB4019 Paenibacillus sp. FSL R5-0912 species 0 159 1536771 1 Paenibacillus sp. FSL R7-0273 0 species 1 1536772 377 82 1 481743 Paenibacillus sp. Y412MC10 species 0 105 324057 1 Paenibacillus sp. JDR-2 species 0 852 1 1536769 species 0 Paenibacillus sp. FSL P4-0081 401 1536770 1 Paenibacillus sp. FSL R5-0345 0 species 0 species Paenibacillus sp. 32O-W 67 1695218 1 Paenibacillus sp. FSL R7-0331 0 species 1 1536773 254 1 2069255 117 0 species Paenibacillus sp. lzh-N1 0 species Paenibacillus mucilaginosus 2449 1 61624 0 species Paenibacillus donghaensis 1 414771 422 59893 1 146 Paenibacillus peoriae 0 species 0 species Paenibacillus borealis 218 1 160799 0 species Paenibacillus sabinae 1 365617 67 species group 0 237 2044880 1 237 483937 1 0 species Paenibacillus riograndensis 169760 1 59 0 species Paenibacillus stellifer 51 1 186824 0 family 51 1677050 1 0 genus 0 species Novibacillus thermophilus 51 1471761 1 24 27295 112 186817 1 Bacillaceae family 0 1 84406 7 1206 1 0 genus Virgibacillus 216 1 1473 Virgibacillus pantothenticus 0 species 176 2017483 1 species 0 Virgibacillus phasianinus 1 1482 296 0 species Virgibacillus halodenitrificans 189 163877 1 0 species Virgibacillus necropolis 328 2620237 2 no rank 0 species 0 Virgibacillus sp. SK37 403957 1 155 1 1911587 173 species 0 Virgibacillus sp. 6R 1329200 2 261 genus 0 0 species Fictibacillus arsenicus 142 255247 1 1 1221500 119 Fictibacillus phosphorivorans species 0 genus 0 113 1055323 1 113 1 33936 Aeribacillus pallidus 0 species 2 45667 184 0 genus 402384 1 82 Halobacillus mangrovi 0 species species 0 Halobacillus halophilus 1 1570 102 27 1 351195 0 genus species 0 Salimicrobium jeotgali 27 1 1230341 1906945 1 116 0 genus 1426 1 116 species 0 Parageobacillus thermoglucosidasius genus 0 5 2675234 761 1 79885 208 Bacillus pseudofirmus species 0 Bacillus halodurans 0 species 98 86665 1 0 species Bacillus krulwichiae 199441 1 209 species 0 Bacillus clausii 127 79880 1 Bacillus lehensis species 0 119 300825 1 104 1 459532 genus 0 0 species Terribacillus aidingensis 104 586416 1 1 347 182709 2 1 Oceanobacillus 0 genus Oceanobacillus iheyensis species 0 346 1 182710 400634 5 1 3 862 Lysinibacillus 0 genus Lysinibacillus sphaericus species 0 1421 1 445 1 1145276 113 0 species Lysinibacillus varians Lysinibacillus fusiformis species 0 28031 1 155 no rank 0 146 2636778 1 Lysinibacillus sp. YS11 species 0 2072025 1 146 0 genus 2675230 2 337 1 859143 208 species 0 Bacillus kochii 0 species Bacillus oceanisediminis 1 665099 129 73 175304 1 0 genus 73 1472767 1 0 species Lentibacillus amyloliquefaciens 1 1386 58 20651 198 0 genus Bacillus 105 1 1178537 Bacillus xiamenensis 0 species 0 species Bacillus cohnii 1 33932 1219 1 1471 140 Bacillus methanolicus 0 species 1479 1 76 0 species Bacillus smithii 0 species Bacillus glycinifermentans 1 1664069 194 122 324767 1 Bacillus infantis 0 species 247 561879 1 Bacillus safensis species 0 1 1413 190 0 species Bacillus cellulosilyticus 0 no rank 185979 19 1210 2049935 1 50 0 species Bacillus sp. Lzh-5 154 1 1827146 0 species Bacillus sp. IHB B 7164 44 1 1446792 Bacillus sp. Pc3 0 species Bacillus sp. YP1 species 0 20 1574141 1 1 563169 67 Bacillus sp. SJ-10 species 0 137 1 756828 0 species Bacillus sp. WP8 species 0 Bacillus sp. JS 1 1127744 20 1941347 1 38 species 0 Bacillus sp. 275 species 0 Bacillus sp. (in: Bacteria) 10 1409 1 48 2026248 1 Bacillus sp. 1s-1 species 0 species 0 Bacillus sp. MD-5 1 2009331 29 1 98228 65 0 species Bacillus sp. OxB-1 1 1628753 19 species 0 Bacillus sp. LM 4-2 150 1565991 1 Bacillus sp. X1(2014) species 0 0 species Bacillus sp. FJAT-14266 1837130 1 49 1 1856406 46 species 0 Bacillus sp. H15-1 0 species Bacillus sp. 1NLA3E 190 1 666686 1 1570330 19 Bacillus sp. BH072 species 0 species 0 Bacillus sp. SDLI1 1 1774743 55 101 1 79883 0 species Bacillus horikoshii species group 0 11327 86661 10 Bacillus bombysepticus 0 species 222 658666 1 0 species Bacillus thuringiensis 1 1428 4923 Bacillus cytotoxicus 0 species 1 580165 139 2750818 3 442 no rank 0 species 0 Bacillus sp. ABP14 1892404 1 148 127 2053832 1 Bacillus sp. HBCD-sjtu species 0 1 1839798 167 species 0 Bacillus sp. FDAARGOS_235 species 0 Bacillus mycoides 1405 1 1076 Bacillus anthracis species 0 628 1392 1 1 155322 171 Bacillus toyonensis species 0 3726 1 1396 species 0 Bacillus cereus 202 412384 1 0 species Bacillus aryabhattai Bacillus beveridgei species 0 81 1 632773 0 species group 132 1792192 1 293387 1 132 Bacillus altitudinis 0 species 240 1 135735 Bacillus endophyticus 0 species 139 1398 1 Bacillus coagulans 0 species species group 0 9 653685 1680 species 0 Bacillus subtilis 1 1423 652 Bacillus paralicheniformis species 0 70 1648923 1 1 72361 14 species 0 Bacillus vallismortis 1 1452 134 Bacillus atrophaeus 0 species 613 1938374 3 species subgroup 0 492670 1 309 Bacillus velezensis 0 species 48 659243 1 species 0 Bacillus siamensis 256 1390 1 Bacillus amyloliquefaciens species 0 species 0 Bacillus licheniformis 105 1402 1 1 119858 92 Bacillus sonorensis 0 species 0 species Bacillus weihaiensis 1 1547283 189 15 79881 1 Bacillus gibsonii 0 species 86664 1 328 Bacillus flexus species 0 535 1 1408 species 0 Bacillus pumilus Bacillus megaterium species 0 1981 1 1404 698 150247 5 0 genus Anoxybacillus amylolyticus 0 species 294699 1 112 species 0 Anoxybacillus gonensis 1 198467 137 33934 1 206 Anoxybacillus flavithermus 0 species 243 2 2639704 no rank 0 Anoxybacillus sp. B2M1 0 species 1490052 1 138 0 species Anoxybacillus sp. B7M1 1 1490057 105 15 129337 1 18 982 Geobacillus genus 0 Geobacillus thermodenitrificans species 0 1 33940 99 309 1505648 4 0 species group 44 1 169283 Geobacillus lituanicus 0 species 138 1 33941 Geobacillus thermoleovorans species 0 72 33938 1 Geobacillus thermocatenulatus 0 species Geobacillus kaustophilus species 0 1 1462 55 0 species Geobacillus subterraneus 129338 1 50 1422 1 100 species 0 Geobacillus stearothermophilus no rank 0 379 2642459 6 Geobacillus sp. Y4.1MC1 0 species 1 581103 100 33 1 1233873 0 species Geobacillus sp. GHH01 99 1 471223 0 species Geobacillus sp. WCH70 20 1 544556 species 0 Geobacillus sp. Y412MC61 0 species Geobacillus sp. Y412MC52 550542 1 24 Geobacillus sp. C56-T3 0 species 1 691437 103 Geobacillus genomosp. 3 species 0 1921421 1 27 genus 0 1 29331 121 121 1449 1 Amphibacillus xylanus species 0 genus 0 428 2675229 2 Bacillus simplex 0 species 1 1478 322 106 264697 1 Bacillus muralis species 0 0 family 186820 7 1092 Listeria genus 0 4 843 1637 6 1 Listeria ivanovii species 0 184 1 1638 93 1643 1 Listeria welshimeri species 0 94 1 1642 Listeria innocua 0 species Listeria monocytogenes 0 species 1 1639 355 1 1640 113 species 0 Listeria seeligeri 2755 1 249 genus 0 species 0 Brochothrix thermosphacta 1 2756 249 1 40 90964 6251 8 0 family Staphylococcaceae 0 genus 43 45669 1 0 species Salinicoccus halodurans 43 407035 1 genus 0 1 2005363 95 1849491 1 95 0 species Auricoccus indicus 0 genus Staphylococcus 1 33 1279 5820 33 Staphylococcus argenteus species 0 155 1 985002 118 1 1290 Staphylococcus hominis species 0 species 0 Staphylococcus lugdunensis 28035 1 140 1286 1 118 0 species Staphylococcus simulans 111 1 643214 0 species Staphylococcus stepanovicii 182 1 155085 Staphylococcus lutrae species 0 0 species Staphylococcus succinus 61015 1 126 175 1283 1 species 0 Staphylococcus haemolyticus 0 species Staphylococcus saprophyticus 136 29385 1 0 species Staphylococcus pasteuri 515 1 45972 Staphylococcus equorum 0 species 194 246432 1 Staphylococcus condimenti species 0 1 70255 134 Staphylococcus kloosii 0 species 103 29384 1 881 1 1280 Staphylococcus aureus species 0 123 1295 1 0 species Staphylococcus schleiferi 1 1288 240 Staphylococcus xylosus 0 species Staphylococcus piscifermentans species 0 1 70258 64 107 91994 1 0 no rank 107 1715860 1 Staphylococcus sp. AntiMn-1 species 0 0 species Staphylococcus pseudintermedius 283734 1 172 1 308354 148 Staphylococcus simiae species 0 species 0 Staphylococcus warneri 1292 1 132 species 0 Staphylococcus capitis 283 29388 1 1 1282 309 Staphylococcus epidermidis species 0 64 46127 1 Staphylococcus felis 0 species 214473 1 173 0 species Staphylococcus nepalensis 1 1296 206 Staphylococcus sciuri species 0 Staphylococcus pettenkoferi species 0 61 170573 1 1294 1 186 0 species Staphylococcus muscae 1 985762 82 Staphylococcus agnetis 0 species 92 1281 1 0 species Staphylococcus carnosus species 0 Staphylococcus cohnii 29382 1 145 1284 1 112 species 0 Staphylococcus hyicus 3 285 4 69965 1 Macrococcus 0 genus species 0 Macrococcus canis 1855823 1 89 2619255 1 108 0 no rank species 0 Macrococcus sp. IME1552 1 1898474 108 1 69966 85 Macrococcus caseolyticus 0 species family 0 186818 23 2774 genus 0 1649 1 123 0 no rank 123 2644826 1 species 0 Kurthia sp. 11kri321 1 1750719 123 0 genus Planococcus 1089 5 1 12 1372 Planococcus rifietoensis 0 species 78 200991 1 0 no rank 164 2 2662419 103 1 1526927 0 species Planococcus sp. PAMC 21323 species 0 Planococcus sp. MB-3u-03 1 2058136 61 1 1374 87 0 species Planococcus kocurii 113 1215089 1 Planococcus halocryophilus species 0 1302659 1 108 species 0 Planococcus sp. L10.15 1 1598147 140 0 species Planococcus faecalis 1 1038856 31 species 0 Planococcus plakortidis Planococcus antarcticus 0 species 105 1 161360 103 414778 1 0 species Planococcus donghaensis species 0 Planococcus maritimus 1 192421 155 157226 1 125 genus 0 species 0 Jeotgalibacillus malaysiensis 125 1 1508404 0 genus Solibacillus 1 3 648800 305 1 185 1 76853 Solibacillus silvestris 0 species no rank 0 1 2637870 119 2048654 1 119 species 0 Solibacillus sp. R5-41 genus 0 648802 1 93 93 241244 1 Rummeliibacillus stabekisii 0 species 1039 1 1 1569 5 genus 0 Sporosarcina 0 no rank 124 2647733 2 Sporosarcina sp. P37 species 0 1 1930546 73 Sporosarcina sp. P33 0 species 51 1930764 1 1 1571 369 species 0 Sporosarcina ureae 1 1476 545 Sporosarcina psychrophila species 0 order 0 Lactobacillales 1 186826 160 19411 26 401 7 186827 0 family 0 genus Aerococcus 1 7 1375 401 14 75 1 51665 Aerococcus urinaeequi species 0 28 1 119206 Aerococcus sanguinicola species 0 0 species Aerococcus christensenii 1 87541 98 1376 1 67 0 species Aerococcus urinae 51 1 128944 Aerococcus urinaehominis species 0 68 1377 1 0 species Aerococcus viridans no rank 0 263855 1 87 0 species Lactobacillales bacterium 1993866 1 87 Lactobacillaceae family 0 58 33958 1 4 6807 genus 0 2767881 2 119 72 53444 1 0 species Lactobacillus lindneri 47 1 1625 Lactobacillus sanfranciscensis 0 species 1 2767877 63 0 genus 0 species Lactobacillus kunkeei 63 1 148814 genus 0 3 2767886 256 1 637971 34 species 0 Lactobacillus koreensis 1 1580 171 species 0 Lactobacillus brevis 1 267363 51 species 0 Lactobacillus zymae genus 0 296 2767889 2 0 species Lactobacillus backii 161 1 375175 Lactobacillus coryniformis 0 species 135 1610 1 0 genus 556 2759736 3 species 0 Lactobacillus paracasei 150 1 1597 144 1582 1 Lactobacillus casei 0 species 0 species Lactobacillus rhamnosus 47715 1 262 genus 0 1 2767876 64 species 0 Lactobacillus amylophilus 1603 1 64 0 genus 2742598 3 343 79 1 1613 Lactobacillus fermentum 0 species 49 1 97478 Lactobacillus mucosae 0 species species 0 Lactobacillus reuteri 215 1 1598 0 genus 233 3 2767893 Lactobacillus curieae 0 species 81 1138822 1 0 species Lactobacillus buchneri 85 1581 1 0 species Lactobacillus parabuchneri 1 152331 67 552 4 2767887 0 genus species 0 Lactobacillus ruminis 1623 1 38 60 1 1601 Lactobacillus agilis 0 species 0 species Lactobacillus salivarius 1624 1 384 Lactobacillus acidipiscis 0 species 70 1 89059 96 2767890 1 genus 0 96 1193095 1 species 0 Lactobacillus hokkaidonensis genus 0 606 2767879 6 90 1 1602 Lactobacillus alimentarius species 0 Lactobacillus allii 0 species 81 1847728 1 0 species Lactobacillus crustorum 1 392416 112 0 species Lactobacillus farciminis 1 1612 112 species 0 Lactobacillus ginsenosidimutans 1 1007676 116 1074467 1 95 Lactobacillus heilongjiangensis species 0 genus 0 Pediococcus 592 6 1 1253 6 species group 0 1 1670797 123 1254 1 123 0 species Pediococcus acidilactici Pediococcus pentosaceus species 0 1255 1 201 Pediococcus inopinatus 0 species 67 1 114090 Pediococcus damnosus species 0 51663 1 116 187452 1 79 Pediococcus claussenii species 0 2767892 1 234 genus 0 0 species Lactobacillus paracollinoides 234 240427 1 genus 0 2 2767885 240 158 1 1599 0 species Lactobacillus sakei 0 species Lactobacillus curvatus 1 28038 82 0 genus 763 3 2767842 78 60520 1 Lactobacillus paraplantarum 0 species 0 species Lactobacillus plantarum 607 1590 1 78 1589 1 Lactobacillus pentosus 0 species 0 genus Lactobacillus 1 16 1578 1790 49 59 1 83683 species 0 Lactobacillus amylolyticus 1 52242 64 0 species Lactobacillus gallinarum 153 33959 1 Lactobacillus johnsonii 0 species 62 1 267818 Lactobacillus kefiranofaciens species 0 no rank 0 4 2620435 317 2099788 1 155 Lactobacillus sp. CBA3605 species 0 Lactobacillus sp. wkB8 0 species 83 1 1545702 1 2108362 44 Lactobacillus sp. D1501 species 0 Lactobacillus sp. CBA3606 species 0 1 2099789 35 1584 1 277 species 0 Lactobacillus delbrueckii 92 1579 1 species 0 Lactobacillus acidophilus Lactobacillus gasseri 0 species 1596 1 193 Lactobacillus amylovorus species 0 1 1604 98 1 109790 49 Lactobacillus jensenii 0 species Lactobacillus helveticus species 0 300 1 1587 1 1600 77 0 species Lactobacillus acetotolerans Streptococcaceae family 0 1300 48 1 3 7479 genus 0 2329 4 1357 Lactococcus raffinolactis 0 species 1 1366 60 species 0 Lactococcus lactis 1807 1 1358 Lactococcus garvieae species 0 1 1363 363 Lactococcus piscium 0 species 99 1364 1 32 5147 1301 43 1 Streptococcus genus 0 Streptococcus gordonii species 0 1 1302 232 Streptococcus pantholopis 0 species 1 1811193 67 171 1 1303 Streptococcus oralis species 0 1814128 1 49 species 0 Streptococcus halotolerans 0 species Streptococcus pyogenes 384 1 1314 Streptococcus pasteurianus species 0 80 197614 1 1 1308 144 Streptococcus thermophilus 0 species 1 1348 93 species 0 Streptococcus parauberis species group 0 316 2 119603 1 1336 212 species 0 Streptococcus equi Streptococcus dysgalactiae species 0 1 1334 104 Streptococcus pseudopneumoniae species 0 257758 1 63 species 0 Streptococcus acidominimus 96 1326 1 species 0 Streptococcus pluranimalium 1 82348 69 0 species Streptococcus equinus 65 1335 1 1 1311 221 Streptococcus agalactiae species 0 species 0 Streptococcus himalayensis 29 1 1888195 Streptococcus pneumoniae species 0 1313 1 245 Streptococcus cristatus species 0 45634 1 70 Streptococcus suis species 0 269 1 1307 671232 3 365 0 species group 57 1 76860 0 species Streptococcus constellatus species 0 Streptococcus anginosus 1 1328 164 144 1 1338 Streptococcus intermedius 0 species Streptococcus uberis 0 species 1 1349 80 262 1 1318 Streptococcus parasanguinis species 0 species 0 Streptococcus macedonicus 59310 1 100 1 102684 138 Streptococcus infantarius species 0 433 2608887 7 0 no rank 51 1 1156431 Streptococcus sp. I-G2 species 0 59 1 712633 species 0 Streptococcus sp. oral taxon 431 31 1902136 1 Streptococcus sp. NPS 308 0 species Streptococcus sp. 'group B' 0 species 1 1319 91 1 1156433 62 Streptococcus sp. I-P16 species 0 71 1839799 1 0 species Streptococcus sp. FDAARGOS_192 Streptococcus sp. A12 0 species 1 1759399 68 Streptococcus marmotae species 0 1 1825069 49 Streptococcus mutans species 0 1 1309 101 species 0 Streptococcus gallolyticus 1 315405 201 1 1304 269 Streptococcus salivarius species 0 0 species Streptococcus iniae 1346 1 98 47 400065 1 Streptococcus merionis species 0 28037 1 172 Streptococcus mitis 0 species 150055 1 83 Streptococcus lutetiensis 0 species Streptococcus sanguinis 0 species 1 1305 54 0 family Enterococcaceae 2067 3 1 81852 18 Enterococcus 0 genus 12 1350 1 16 1565 1 37734 103 species 0 Enterococcus casseliflavus species 0 Enterococcus mundtii 157 53346 1 Enterococcus faecalis species 0 252 1 1351 2608891 3 246 0 no rank Enterococcus sp. CR-Ec1 species 0 2057791 1 90 66 1 2060307 Enterococcus sp. FDAARGOS_375 species 0 90 1 2060306 0 species Enterococcus sp. FDAARGOS_163 1 1354 158 Enterococcus hirae 0 species 1 417368 85 0 species Enterococcus thailandicus 53345 1 101 Enterococcus durans species 0 333 1352 1 Enterococcus faecium species 0 2005703 1 114 Enterococcus wangshanyuanii 0 species 0 genus 151 1 51668 Tetragenococcus halophilus 0 species 151 51669 1 1 3 2737 199 2 genus 0 Vagococcus 114 633807 1 0 species Vagococcus penaei 83 519472 1 Vagococcus teuberi species 0 1 33969 149 genus 0 species 0 Melissococcus plutonius 149 1 33970 1061 10 186828 family 0 0 genus Marinilactibacillus 1 2 191769 239 1 1 2632303 238 0 no rank species 0 Marinilactibacillus sp. 15R 1 1911586 238 3 673 5 2747 1 Carnobacterium 0 genus 201 2 257487 0 no rank 133 208596 1 species 0 Carnobacterium sp. 17-4 1564681 1 68 species 0 Carnobacterium sp. CP1 111 1 147709 species 0 Carnobacterium inhibens 1 2751 358 species 0 Carnobacterium maltaromaticum 3 149 3 1470540 1 Jeotgalibaca 0 genus 90 708126 1 Jeotgalibaca dankookensis 0 species 0 no rank 2621505 1 56 Jeotgalibaca sp. PTS2502 species 0 1903686 1 56 1 17 81850 1483 5 0 family Leuconostocaceae genus 0 Leuconostoc 1 1243 9 934 2 Leuconostoc carnosum 0 species 77 1252 1 0 no rank 2685106 1 102 102 1 979982 0 species Leuconostoc sp. C2 Leuconostoc kimchii 0 species 1 136609 93 262 1245 1 Leuconostoc mesenteroides 0 species Leuconostoc citreum 0 species 84 33964 1 255248 1 53 species 0 Leuconostoc garlicum 211 1244 1 0 species Leuconostoc gelidum 50 1 1246 Leuconostoc lactis species 0 450 3 1 6 46255 0 genus Weissella Weissella jogaejeotgali 0 species 1 1631871 217 165096 1 60 0 species Weissella koreensis 67 1 1249 Weissella paramesenteroides species 0 1 759620 36 Weissella ceti species 0 Weissella cibaria species 0 1 137591 67 46254 1 94 genus 0 1 1247 94 Oenococcus oeni species 0 997 12 1737404 0 class 69 1737407 1 no rank 0 0 genus 69 1 1582879 69 1852374 1 Ezakiella massiliensis species 0 Tissierellales 0 order 3 928 1737405 11 1 family 0 Peptoniphilaceae 1 1570339 8 762 3 genus 0 105 1 543311 105 1 33033 Parvimonas micra species 0 0 genus 2 165779 138 species 0 Anaerococcus mediterraneensis 78 1 1870984 1 33034 60 species 0 Anaerococcus prevotii 0 genus 162289 1 49 0 no rank 49 1 2637196 1912856 1 49 species 0 Peptoniphilus sp. ING2-D1G 1 150022 2 101 1 genus 0 Finegoldia Finegoldia magna 0 species 100 1260 1 366 1161127 1 genus 0 0 species Murdochiella vaginalis 1852373 1 366 2 2042895 1 1 163 Gottschalkiaceae 0 family 0 genus 1505664 1 162 0 species Gottschalkia acidurici 162 1 1556 0 class Clostridia 44177 99 1 186801 172 1 8 53433 826 9 order 0 Halanaerobiales 0 family Halobacteroidaceae 311 1 1 3 53434 42417 1 182 genus 0 182 42422 1 species 0 Halobacteroides halobius 1 28186 128 0 genus Acetohalobium arabaticum 0 species 1 28187 128 972 4 1 1 506 Halanaerobiaceae family 0 0 genus 397 2 2330 2331 1 237 Halanaerobium praevalens species 0 160 656519 1 Halanaerobium hydrogeniformans species 0 32636 1 108 genus 0 31909 1 108 Halothermothrix orenii 0 species order 0 Thermoanaerobacterales 1 68295 31 2734 8 33 543372 1 family 0 0 genus 33 252965 1 1 252966 33 Mahella australiensis 0 species family 0 1409 543371 11 genus 0 2 28895 362 253 1 1517 species 0 Thermoanaerobacterium thermosaccharolyticum species 0 Thermoanaerobacterium xylanolyticum 29329 1 109 0 genus Caldicellulosiruptor 1047 15 1 9 44000 145 1 31899 0 species Caldicellulosiruptor bescii 179 413889 1 Caldicellulosiruptor kronotskyensis 0 species Caldicellulosiruptor lactoaceticus species 0 100 1 52766 1 44001 143 Caldicellulosiruptor saccharolyticus species 0 178 717609 1 0 species Caldicellulosiruptor obsidiansis 87 1 55205 Caldicellulosiruptor owensensis 0 species species 0 Caldicellulosiruptor kristjanssonii 52765 1 100 1 413888 100 Caldicellulosiruptor hydrothermalis 0 species 186814 15 1 2 1192 Thermoanaerobacteraceae 0 family genus 0 31 1 140458 85874 1 31 Thermacetogenium phaeum 0 species 874 40 1 1754 9 0 genus Thermoanaerobacter 108150 1 104 Thermoanaerobacter italicus 0 species Thermoanaerobacter wiegelii species 0 46354 1 139 583357 1 109 Thermoanaerobacter mathranii 0 species 0 no rank 201 2 2636821 Thermoanaerobacter sp. X514 species 0 399726 1 87 0 species Thermoanaerobacter sp. X513 114 573062 1 species 0 Thermoanaerobacter brockii 29323 1 96 species 0 Thermoanaerobacter pseudethanolicus 1 496866 96 89 2325 1 species 0 Thermoanaerobacter kivui 0 no rank 42857 2 90 0 genus 68 44260 1 1 1525 68 species 0 Moorella thermoacetica 22 1 42837 genus 0 0 species Ammonifex degensii 22 1 42838 129957 1 61 0 genus species 0 Carboxydothermus hydrogenoformans 61 1 129958 1 249529 134 genus 0 134 911092 1 Caldanaerobacter subterraneus 0 species 0 family Thermodesulfobiaceae 1 3 227387 92 2 0 genus Thermodesulfobium 1 227388 2 90 1 0 species Thermodesulfobium narugense 184064 1 89 1 186802 129 40235 75 0 order Clostridiales 200 68298 3 family 0 genus 0 63 1 129001 63 86170 1 Syntrophothermus lipocalidus species 0 1 137 862 2 1 Syntrophomonas genus 0 863 1 136 0 species Syntrophomonas wolfei 70 216572 1 family 0 genus 0 70 459786 1 species 0 Oscillibacter valericigenes 351091 1 70 67 1 1 543349 2 0 family Symbiobacteriaceae 0 genus 66 2733 1 2734 1 66 Symbiobacterium thermophilum 0 species 1 31984 59 0 family 59 1 2697 0 genus 35701 1 59 Heliobacterium modesticaldum species 0 0 family 888 2304686 10 72 2305130 1 0 no rank species 0 Ruminiclostridium sp. KB18 1 1834198 72 1637257 1 73 genus 0 73 1 884684 Mageeibacillus indolicus 0 species Ruminiclostridium 0 genus 1 114 1508657 2 1 1521 1 113 [Clostridium] cellulolyticum 0 species 83 1 2304693 genus 0 1 84032 83 species 0 [Clostridium] thermosuccinogenes 0 genus 75 2304691 1 75 1510 1 [Clostridium] stercorarium 0 species genus 0 1 236752 83 236753 1 83 Fastidiosipila sanguinis 0 species 0 genus 3 2304692 388 species 0 Ruminiclostridium thermocellum 97 1 1515 1 1677857 130 Herbivorax saccincola 0 species 288965 1 161 0 species [Clostridium] clariflavum family 0 Lachnospiraceae 1 186803 21 4951 2 318 572511 2 0 genus species 0 Blautia hansenii 1322 1 119 no rank 0 199 1 2648079 1 1796616 199 Blautia sp. YL58 species 0 0 no rank 148 2 186928 78 1 712991 Lachnospiraceae bacterium oral taxon 500 species 0 [Eubacterium] rectale 0 species 1 39491 70 0 genus 207244 1 99 species 0 Anaerostipes hadrus 1 649756 99 2569097 1 2095 0 genus 2095 39488 1 0 species [Eubacterium] hallii Cellulosilyticum 0 genus 1 807 2 698776 1 29360 1 806 0 species Cellulosilyticum lentocellum 1506553 3 467 genus 0 66219 1 244 species 0 Lachnoclostridium phytofermentans Lachnoclostridium phocaeense 0 species 57 1 1871021 1 2608895 166 no rank 0 0 species Lachnoclostridium sp. YL32 166 1 1834196 0 genus Herbinix 1 2 1663717 88 1 Herbinix luporum 0 species 87 1679721 1 0 genus 432 2 830 Butyrivibrio hungatei species 0 173 185008 1 1 43305 259 species 0 Butyrivibrio proteoclasticus genus 0 28050 1 128 128 39485 1 [Eubacterium] eligens species 0 85 2719313 1 genus 0 species 0 [Clostridium] bolteae 1 208479 85 0 genus 1 2719231 116 1 84030 116 [Clostridium] saccharolyticum 0 species genus 0 1 2039240 123 Anaerotignum propionicum species 0 123 1 28446 43 1 841 genus 0 Roseburia hominis species 0 43 301301 1 Ruminococcaceae family 0 541000 8 1 1 764 57 1 552397 no rank 0 species 0 [Clostridium] cellulosi 57 29343 1 no rank 0 2305133 1 40 species 0 Ruminococcaceae bacterium CPB6 40 1572656 1 genus 0 253238 1 60 60 1 253239 0 species Ethanoligenens harbinense 216851 1 318 0 genus Faecalibacterium prausnitzii 0 species 1 853 318 genus 0 78 946234 1 Flavonifractor plautii 0 species 78 1 292800 1263 2 210 0 genus Ruminococcus bicirculans species 0 119 1160721 1 1264 1 91 Ruminococcus albus 0 species 7 8055 186807 24 1 Peptococcaceae family 0 genus 0 471826 1 80 Candidatus Desulforudis audaxviator species 0 80 1 471827 83 51196 1 0 genus 1 51197 83 species 0 Syntrophobotulus glycolicus 227 56112 3 0 genus species 0 Dehalobacter restrictus 55583 1 41 no rank 0 186 2 2635733 1131462 1 92 Dehalobacter sp. CF species 0 1 1147129 94 0 species Dehalobacter sp. DCA 278993 1 112 0 genus Thermincola potens species 0 112 1 863643 1 2282742 102 genus 0 species 0 Desulfotomaculum acetoxidans 58138 1 102 genus 0 227 2282740 1 1 102134 227 Desulfotomaculum gibsoniae species 0 Desulfitobacterium 0 genus 5 36853 1 2 462 36854 1 105 Desulfitobacterium dehalogenans 0 species Desulfitobacterium metallireducens species 0 142877 1 103 1 233055 74 Desulfitobacterium dichloroeliminans 0 species species 0 Desulfitobacterium hafniense 178 49338 1 0 genus 1 51514 166 species 0 Dehalobacterium formicoaceticum 1 51515 166 6113 2 1 79206 4 0 genus Desulfosporosinus 148 1 79209 0 species Desulfosporosinus meridiei 5803 885581 1 0 species Desulfosporosinus acidiphilus 1 1563 160 0 species Desulfosporosinus orientis Desulfotomaculum 0 genus 2 476 5 1562 1 Desulfotomaculum reducens species 0 59610 1 258 80 1 1833852 0 species Desulfotomaculum ferrireducens species 0 Desulfotomaculum nigrificans 84 1 1565 species 0 Desulfotomaculum ruminis 1 1564 52 family 0 990719 1 41 990721 1 41 0 genus 41 1 1805714 0 species Christensenella massiliensis 0 family 186804 9 1137 genus 0 1 1870884 558 0 species Clostridioides difficile 558 1 1496 0 no rank 86 1 1411023 86 1 2081703 Peptostreptococcaceae bacterium oral taxon 929 species 0 1 127 186831 2 1 Acetoanaerobium 0 genus 0 species Acetoanaerobium sticklandii 1 1511 126 44259 2 1 1 73 Filifactor genus 0 72 1 143361 0 species Filifactor alocis genus 0 Peptoclostridium 59 1 1 2 1481960 1731 1 58 Peptoclostridium acidaminophilum species 0 1 1849828 234 0 genus 1 1505 234 Paeniclostridium sordellii 0 species 8 23167 31979 39 1 Clostridiaceae family 0 4 398 4 49082 1 Candidatus Arthromitus genus 0 no rank 0 394 2638829 3 Candidatus Arthromitus sp. SFB-mouse-NL 0 species 1508644 1 143 Candidatus Arthromitus sp. SFB-rat-Yit 0 species 123 1 1041504 128 1 49118 0 species Candidatus Arthromitus sp. SFB-mouse 2 1 1981033 0 genus Mordavella Clostridium genus 0 1485 30 1 27 21944 Clostridium argentinense species 0 234 1 29341 Clostridium tetani species 0 1513 1 250 Clostridium saccharoperbutylacetonicum 0 species 541 36745 1 1 84022 256 Clostridium aceticum 0 species Clostridium cochlearium 0 species 241 1494 1 1502 1 479 0 species Clostridium perfringens 1 1216932 296 species 0 Clostridium bornimense 230 1 394958 0 species Clostridium taeniosporum Clostridium novyi species 0 1542 1 190 0 no rank 173 2614128 2 0 species Clostridium sp. SY8519 62 1042156 1 111 755731 1 Clostridium sp. BNL1100 species 0 245 1509 1 Clostridium sporogenes species 0 238 1 1493 species 0 Clostridium cellulovorans 1491 1 12645 species 0 Clostridium botulinum species 0 Clostridium acetobutylicum 1488 1 206 465 217159 1 species 0 Clostridium carboxidivorans 167 1519 1 Clostridium tyrobutyricum species 0 Clostridium scatologenes 0 species 1 1548 347 302 238834 1 0 species Clostridium estertheticum 1538 1 244 Clostridium ljungdahlii 0 species 554 1501 1 Clostridium pasteurianum 0 species Clostridium beijerinckii 0 species 1520 1 853 Clostridium formicaceticum species 0 249 1497 1 Clostridium kluyveri species 0 1 1534 287 373 1 1561 0 species Clostridium baratii 0 species Clostridium chauvoei 46867 1 172 Clostridium butyricum species 0 1 1492 396 Clostridium saccharobutylicum 0 species 1052 1 169679 Clostridium autoethanogenum species 0 232 84023 1 207 1 390805 0 genus species 0 Geosporobacter ferrireducens 1424294 1 207 608 114627 2 genus 0 species 0 Alkaliphilus oremlandii 1 461876 126 482 1 208226 Alkaliphilus metalliredigens 0 species 0 no rank 538999 7 388 1 1392389 75 genus 0 species 0 Intestinimonas butyriciproducens 1297617 1 75 0 family 70 2 539000 0 genus Thermaerobacter 1 2 73918 70 1 Thermaerobacter marianensis 0 species 69 73919 1 Clostridiales Family XIII. Incertae Sedis 0 family 543314 3 1 1 159 1 143393 90 [Eubacterium] sulci 0 species genus 0 68 1 86331 68 1 114527 0 species Mogibacterium diversum 0 genus 1 2717089 84 species 0 Mordavella sp. Marseille-P3756 1 2086584 84 0 family 373 2 186806 genus 0 1730 1 236 0 species Eubacterium limosum 1736 1 236 0 genus 1 33951 137 Acetobacterium woodii species 0 1 33952 137 0 order 1 485256 140 0 family 1 485255 140 375928 1 140 0 genus Natranaerobius thermophilus species 0 140 375929 1 order 0 143 2 2770089 0 family 107 1 2770092 107 1 499228 0 genus 1 499229 107 species 0 Tepidanaerobacter acetatoxydans 1 2770093 36 0 family 0 genus 36 291988 1 0 species Thermosediminibacter oceani 291990 1 36 class 0 82 1 1676648 82 1676649 1 order 0 82 1 1676650 family 0 1 1676651 82 0 genus species 0 Limnochorda pilosa 82 1 1555112 class 0 Negativicutes 1 25 909932 3936 7 0 order Veillonellales 1 1843489 6 613 7 family 0 606 5 31977 0 genus 237 906 1 0 species Megasphaera elsdenii 907 1 237 192 29465 2 genus 0 Veillonella parvula 0 species 151 1 29466 Veillonella rodentium species 0 41 1 248315 1 909928 43 genus 0 43 1702287 1 Negativicoccus massiliensis species 0 134 1 39948 0 genus Dialister pneumosintes 0 species 134 1 39950 124 2 1 1843488 4 order 0 Acidaminococcales family 0 909930 3 122 Acidaminococcus 0 genus 1 122 904 3 1 species 0 Acidaminococcus intestini 40 1 187327 Acidaminococcus fermentans species 0 905 1 81 order 0 Selenomonadales 1 14 909929 3192 8 3 2422 1843491 9 1 Selenomonadaceae 0 family Selenomonas 0 genus 24 2278 6 970 1 51 1 69823 species 0 Selenomonas sputigena 1 971 2079 0 species Selenomonas ruminantium 0 no rank 124 2637378 3 0 species Selenomonas sp. oral taxon 478 1 712538 57 31 713030 1 Selenomonas sp. oral taxon 136 0 species Selenomonas sp. oral taxon 920 species 0 1884263 1 36 158846 2 1 1 141 Megamonas genus 0 Megamonas hypermegale 0 species 1 158847 140 3 762 1843490 4 1 Sporomusaceae family 0 1 365348 3 759 3 genus 0 Pelosinus 0 species Pelosinus fermentans 365349 1 189 567 2629460 1 no rank 0 1 484770 567 0 species Pelosinus sp. UFO1 0 no rank 84086 1 142 endosymbiont 'TC1' of Trimyema compressum species 0 142 243899 1 37 33974 1 no rank 0 0 genus 1 1930845 37 0 species Ndongobacter massiliensis 1871025 1 37 5 526524 417 class 0 order 0 526525 5 417 family 0 417 128827 5 191303 1 144 genus 0 0 no rank 144 2638206 1 Turicibacter sp. H121 0 species 1712675 1 144 0 no rank 88 1 544447 Erysipelotrichaceae bacterium I46 0 species 1 1834207 88 145 1647 2 0 genus species 0 Erysipelothrix larvae 51 1 1514105 94 1 1648 species 0 Erysipelothrix rhusiopathiae genus 0 1 1729679 40 1702221 1 40 0 species Faecalibaculum rodentium 0 phylum 67819 3 135 135 3 1663419 0 class 2 135 3 1663425 1 Fimbriimonadales 0 order 2 1663426 133 family 0 2 1005038 1 1 133 Fimbriimonas genus 0 132 1005039 1 species 0 Fimbriimonas ginsengisoli clade 0 1798711 149 39832 0 phylum Cyanobacteria 1 149 1117 39832 8 13207 1301283 43 0 subclass order 0 Chroococcales 1 1118 23 8888 29 4 1890449 1 21 2978 Microcystaceae family 0 15 2957 1125 3 1 Microcystis 0 genus 446 2643300 1 0 no rank 1967666 1 446 Microcystis sp. MC19 species 0 species 0 Microcystis aeruginosa 1 1126 2496 596 4 1 1890452 2 0 family Cyanobacteriaceae genus 0 592 102234 1 592 1 379064 Cyanobacterium aponinum species 0 Aphanothecaceae 0 family 19 2120 9 1890450 1 413 263510 1 genus 0 2546360 1 413 species 0 413 1 43989 Cyanothece sp. ATCC 51142 strain 0 genus 0 1 1453359 232 Candidatus Atelocyanobacterium thalassa 0 species 232 713887 1 genus 0 28070 2 638 303 2546356 1 0 species 65393 1 303 Cyanothece sp. PCC 7424 0 strain 0 species 2546359 1 335 0 strain Cyanothece sp. PCC 7822 335 1 497965 213 2 92682 0 no rank 0 genus Halothece 213 2 1 76023 2 0 no rank 1 2632878 211 211 65093 1 Halothece sp. PCC 7418 species 0 2546365 2 605 0 genus species 0 605 2 2546366 352 1 395962 Cyanothece sp. PCC 8802 strain 0 1 41431 253 strain 0 Cyanothece sp. PCC 8801 3165 38 1 1890464 7 family 0 Chroococcaceae genus 0 1402 1 268175 1 2648896 1402 0 no rank Chondrocystis sp. NIES-4102 0 species 1402 1 2005460 0 genus Geminocystis 1 3 669357 1060 2 0 no rank 2625037 2 1058 1615909 1 642 Geminocystis sp. NIES-3708 species 0 416 1617448 1 species 0 Geminocystis sp. NIES-3709 genus 0 Gloeocapsa 1 2 102231 665 2 no rank 0 2623012 1 663 663 1173026 1 Gloeocapsa sp. PCC 7428 species 0 0 order Oscillatoriales 4319 101 1 20 1150 3 1892249 1 29 194 Cyanothecaceae 0 family 165 15 1 43988 2 0 genus Cyanothece 150 1 2649277 no rank 0 0 species Cyanothece sp. PCC 7425 395961 1 150 1892252 5 1 12 1096 Microcoleaceae 0 family Microcoleus 0 genus 1 401 2 44471 1 400 2642155 1 0 no rank 1 1173027 400 Microcoleus sp. PCC 7113 0 species 683 5 1 1205 2 genus 0 Trichodesmium 678 1 1206 species 0 Trichodesmium erythraeum 15 179 1892251 3 1 Coleofasciculaceae 0 family Geitlerinema genus 0 2 63132 1 1 164 no rank 0 2648775 1 163 163 1173025 1 Geitlerinema sp. PCC 7407 species 0 2 1892255 336 family 0 336 4 1 2 241421 0 genus Crinalium 332 241425 1 0 species Crinalium epipsammum Oscillatoriaceae 0 family 23 2413 6 1892254 1 2 1155738 1 10 1136 Moorea 0 genus 1126 1155739 1 species 0 Moorea producens 1 3 1158 1254 10 genus 0 Oscillatoria Oscillatoria nigro-viridis species 0 1 482564 808 1 118323 436 Oscillatoria acuminata 0 species 35 14371 1161 33 1 Nostocales 0 order family 0 3860 8 2661849 1186 8 1 16 3860 Calothrix 0 genus no rank 0 3312 2619626 6 647 1954171 1 0 species Calothrix sp. NIES-2098 species 0 Calothrix sp. PCC 7507 458 1 99598 441 1 2005461 Calothrix sp. NIES-4101 0 species 703 2005469 1 Calothrix sp. NIES-4071 0 species 1 1337936 368 Calothrix sp. 336/3 0 species 695 2005462 1 species 0 Calothrix sp. NIES-3974 1 32054 532 Calothrix parietina 0 species Rivulariaceae 0 family 1185 3 1 35 1107 3 1072 373984 2 1 Rivularia genus 0 no rank 0 2676603 1 1069 0 species Rivularia sp. PCC 7116 373994 1 1069 family 0 952 1892263 2 952 3 1 2 1190 genus 0 Fischerella 949 1 494603 0 no rank 1 1752063 949 Fischerella sp. NIES-3754 0 species 1 1162 18 7690 34 0 family Nostocaceae 1 1163 4 1146 9 genus 0 Anabaena 0 species Anabaena cylindrica 418 1 1165 2 2619674 719 0 no rank 0 species Anabaena sp. 90 294 1 46234 1647413 1 425 species 0 Anabaena sp. WA102 1 3 264688 1244 3 genus 0 Trichormus 1 264691 803 species 0 Trichormus variabilis Trichormus azollae 0 species 1164 1 438 1177 10 1 49 5266 Nostoc 0 genus 426 1 272131 species 0 Nostoc punctiforme no rank 0 4188 2593658 7 489 1 1618022 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 0 1 103690 494 0 species Nostoc sp. PCC 7120 species 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 455 1261031 1 619 1 28072 Nostoc sp. PCC 7524 species 0 657 1751286 1 Nostoc sp. NIES-3756 0 species Nostoc sp. PCC 7107 species 0 317936 1 745 Nostoc sp. CENA543 species 0 1869241 1 729 species 0 Nostoc flagelliforme 1 1306274 603 1219117 1 727 0 no rank 1940762 1 727 species 0 Nostocales cyanobacterium HT-58-2 306 5 1 5 307596 class 0 Gloeobacteria Gloeobacterales 0 order 307595 4 1 1 301 1890422 3 1 3 300 Gloeobacteraceae 0 family genus 0 33071 2 297 142 33072 1 Gloeobacter violaceus 0 species 155 1 1416614 0 species Gloeobacter kilaueensis Synechococcales order 0 54 1890424 1 98 9558 1 1715 1213 5 1 Prochloraceae 0 family 1714 5 1 4 1218 0 genus Prochlorococcus species 0 Prochlorococcus marinus 1281 1 1219 0 no rank 428 2 2627481 1501269 1 250 Prochlorococcus sp. MIT 0801 species 0 0 species Prochlorococcus sp. MIT 0604 178 1 1501268 Acaryochloridaceae 0 family 10 516 1890429 3 1 2 155977 1 7 506 Acaryochloris 0 genus 1 155978 499 species 0 Acaryochloris marina 2 1890436 1154 0 family 1 1154 2 1152 1 Pseudanabaena 0 genus 0 no rank 1153 2593292 1 82654 1 1153 Pseudanabaena sp. PCC 7367 0 species 2303730 1 391 0 family genus 0 391 1 170610 391 1209493 1 0 species Halomicronema hongdechloris 1890426 32 1 8 3360 Synechococcaceae family 0 362 2 1 3 167375 genus 0 Cyanobium Cyanobium gracile 0 species 158 1 59930 no rank 0 1 2627006 202 species 0 Cyanobium sp. NIES-981 1851505 1 202 0 genus 146785 1 182 1 146786 182 Thermosynechococcus elongatus 0 species 0 genus 253 13034 1 species 0 Dactylococcopsis salina 253 292566 1 2555 101 1 1129 26 0 genus Synechococcus 105 33070 1 0 species Synechococcus lividus 2189 23 2626047 no rank 0 90 1 166314 0 species Synechococcus sp. WH 8109 Synechococcus sp. PCC 7002 species 0 1 32049 49 Synechococcus sp. KORDI-49 0 species 585423 1 75 Synechococcus sp. JA-3-3Ab species 0 96 1 321327 0 species Synechococcus sp. CC9311 1 64471 118 316278 1 152 species 0 Synechococcus sp. RCC307 Synechococcus sp. KORDI-52 species 0 46 585425 1 0 species Synechococcus sp. CC9902 57 1 316279 Synechococcus sp. PCC 7003 species 0 67 1 374981 1 84588 56 Synechococcus sp. WH 8102 0 species species 0 Synechococcus sp. PCC 73109 57 374982 1 52 1 29410 species 0 Synechococcus sp. WH 8103 62 110662 1 0 species Synechococcus sp. CC9605 Synechococcus sp. JA-2-3B'a(2-13) species 0 321332 1 223 195248 1 65 Synechococcus sp. PCC 8807 species 0 Synechococcus sp. PCC 7117 0 species 1 195498 51 species 0 Synechococcus sp. KORDI-100 77 1280380 1 species 0 Synechococcus sp. WH 7803 1 32051 41 1 1173263 223 Synechococcus sp. PCC 7502 species 0 0 species Synechococcus sp. SynAce01 1 1916956 176 111 195253 1 Synechococcus sp. PCC 6312 0 species 1 1350461 162 species 0 Synechococcus sp. UTEX 2973 species 0 Synechococcus sp. NIES-970 1 1827144 83 160 1 32046 species 0 Synechococcus elongatus 677 1890428 4 family 0 1 1142 4 677 19 0 genus Synechocystis 658 2640012 3 no rank 0 species 0 Synechocystis sp. IPPAS B-1465 1 2116702 120 1147 1 418 Synechocystis sp. PCC 6714 species 0 0 species Synechocystis sp. PCC 6803 1 1148 120 1890438 6 1 6 1647 Leptolyngbyaceae 0 family 45 1641 47251 5 1 Leptolyngbya 0 genus Leptolyngbya boryana 0 species 206 1 1184 no rank 0 1390 3 2650499 species 0 Leptolyngbya sp. PCC 7376 217 1 111781 Leptolyngbya sp. O-77 0 species 1010 1080068 1 1752064 1 163 species 0 Leptolyngbya sp. NIES-3755 no rank 0 1983111 1 193 193 718217 1 species 0 cyanobacterium endosymbiont of Epithemia turgida 1 1351 8 52604 1 Pleurocapsales order 0 4 1890498 1 11 1101 Dermocarpellaceae 0 family 1090 6 1 102115 3 genus 0 Stanieria no rank 0 507 1 2642663 1 1807358 507 Stanieria sp. NIES-3757 0 species 1 102116 577 species 0 Stanieria cyanosphaera family 0 Hyellaceae 1 1890500 3 249 16 3 233 44474 2 1 Pleurocapsa genus 0 Pleurocapsa minor species 0 54308 1 230 0 order Chroococcidiopsidales 838 1 1 1890505 4 Chroococcidiopsidaceae 0 family 1890528 3 1 21 837 54298 2 1 6 816 Chroococcidiopsis 0 genus 810 54299 1 Chroococcidiopsis thermalis species 0 252 508458 7 phylum 0 252 649775 7 0 class 1 649776 7 252 4 0 order Synergistales 6 649777 1 1 248 Synergistaceae family 0 50 81461 1 genus 0 0 species Thermanaerovibrio acidaminovorans 50 81462 1 genus 0 508459 1 69 1 1197717 69 Cloacibacillus porcorum species 0 genus 0 49894 1 36 97477 1 36 Acetomicrobium mobile species 0 1 81466 67 genus 0 67 1 81468 Aminobacterium colombiense 0 species 25 336260 1 0 genus 25 336261 1 0 species Thermovirga lienii phylum 0 6 200930 918 918 68337 6 0 class 0 order 6 191393 918 191394 6 1 1 918 Deferribacteraceae 0 family 545865 1 135 genus 0 0 species Calditerrivibrio nitroreducens 1 477976 135 117999 1 89 genus 0 118000 1 89 Denitrovibrio acetiphilus 0 species 1 248 53572 2 1 Deferribacter genus 0 Deferribacter desulfuricans 0 species 247 197162 1 445 1 2351 0 genus 1 2352 445 Flexistipes sinusarabici 0 species 0 phylum 5 74152 220 class 0 47 641853 1 1 641854 47 0 order family 0 47 641876 1 47 1 423604 genus 0 1 423605 47 Elusimicrobium minutum species 0 61 99260 1 no rank 0 uncultured Termite group 1 bacterium species 0 61 167965 1 class 0 112 447830 3 112 3 1783344 order 0 family 0 Endomicrobiaceae 112 1 1 3 1783343 genus 0 111 1408194 2 0 species Candidatus Endomicrobium trichonymphae 56 1408204 1 1408281 1 55 0 species Endomicrobium proavitum 126 2138240 2 0 phylum class 0 2 2138243 126 1 126 2138246 2 1 Coprothermobacterales order 0 family 0 125 2138247 1 genus 0 125 1 68335 Coprothermobacter proteolyticus species 0 125 1 35786 0 phylum 1053 200783 19 187857 19 1053 0 class 1 860 32069 16 1 Aquificales order 0 384 3 224027 family 0 genus 0 1 182899 65 65 1 309805 Persephonella marina 0 species 319 2 212790 0 genus 0 no rank 2619248 1 207 0 species Sulfurihydrogenibium sp. YO3AOP1 207 1 436114 112 309806 1 Sulfurihydrogenibium azorense species 0 1 90150 25 0 no rank 0 genus 1 412592 25 412593 1 25 species 0 Thermosulfidibacter takaii 11 64898 450 family 0 22 2713 1 genus 0 1 63363 22 0 species Aquifex aeolicus 75905 2 77 0 genus Thermocrinis albus species 0 1 136094 43 species 0 Thermocrinis ruber 34 1 75906 Hydrogenobaculum genus 0 6 168657 1 7 319 no rank 0 312 2622382 5 1 547146 59 species 0 Hydrogenobaculum sp. SN species 0 Hydrogenobaculum sp. SHO 59 547145 1 Hydrogenobaculum sp. HO species 0 547144 1 59 species 0 Hydrogenobaculum sp. Y04AAS1 380749 1 76 Hydrogenobaculum sp. 3684 species 0 59 1 547143 32 1 1 2 939 0 genus Hydrogenobacter 31 1 940 Hydrogenobacter thermophilus species 0 3 1485951 193 order 0 0 family 558314 3 193 1 23 2 171868 1 Thermovibrio 0 genus 228745 1 22 0 species Thermovibrio ammonificans 64159 1 170 genus 0 170 1 64160 species 0 Desulfurobacterium thermolithotrophum phylum 0 20 32066 6921 6921 3 1 203490 20 0 class Fusobacteriia order 0 Fusobacteriales 6918 4 1 203491 19 0 family 5919 203492 10 1 167639 155 genus 0 Ilyobacter polytropus species 0 1 167642 155 0 genus Fusobacterium 5764 9 1 9 848 660 1 860 Fusobacterium periodonticum 0 species 171 1 850 species 0 Fusobacterium mortiferum 440 856 1 0 species Fusobacterium varium 96 1 859 0 species Fusobacterium necrophorum species 0 Fusobacterium hwasookii 312 1583098 1 Fusobacterium ulcerans species 0 1 861 176 86 1 849 species 0 Fusobacterium gonidiaformans 0 species Fusobacterium nucleatum 1 851 3814 family 0 995 1129771 8 153 1 34104 0 genus 0 species Streptobacillus moniliformis 153 34105 1 1 32068 133 0 genus 133 1 826 Sebaldella termitidis 0 species genus 0 168808 1 92 Sneathia amnii 0 species 92 1 187101 Leptotrichia 0 genus 1 617 5 32067 1 2633022 3 420 no rank 0 species 0 Leptotrichia sp. oral taxon 847 1 1785996 139 Leptotrichia sp. oral taxon 212 species 0 153 712357 1 1 712368 128 species 0 Leptotrichia sp. oral taxon 498 Leptotrichia buccalis 0 species 40542 1 196