members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4568 20144 30 13222063 0 name 1 0 superkingdom 0 30226 252 2157 46 1783275 2620 0 clade 35 1 51967 0 phylum 35 498845 1 genus 0 498846 1 35 0 species Candidatus Korarchaeum cryptofilum phylum 0 1923 36 28889 0 class 183924 36 1923 order 0 102 3 871006 0 family 42 1 255472 0 genus 1 200414 42 42 200415 1 Caldisphaera lagunensis species 0 family 0 2 871007 60 2 105850 60 genus 0 1 Acidilobus 1 species 0 Acidilobus saccharovorans 59 1 242703 114380 13 487 order 0 1 Desulfurococcales 1 2307 3 99 family 0 1 2308 68 genus 0 0 species Pyrodictium delaneyi 1 1273541 68 genus 0 54247 1 16 Hyperthermus butylicus 0 species 16 1 54248 15 1 54251 0 genus Pyrolobus fumarii 0 species 54252 1 15 1 1 family 0 Desulfurococcaceae 387 2272 9 41 1 477695 0 genus 1200300 1 41 Thermogladius calderae species 0 genus 0 1 54253 32 0 species Thermosphaera aggregans 1 54254 32 36 2 54258 genus 0 0 species Ignicoccus islandicus 6 1 54259 species 0 Ignicoccus hospitalis 1 160233 30 genus 0 2 2273 84 1 94694 64 0 species Desulfurococcus amylolyticus 2275 1 20 Desulfurococcus mucosus 0 species genus 0 193 2279 2 97 2280 1 0 species Staphylothermus marinus Staphylothermus hellenicus 0 species 96 84599 1 868 2281 9 order 0 0 family 868 9 118883 170 1 69655 0 genus 170 111955 1 Sulfolobus tokodaii species 0 genus 0 41980 2 87 1006005 1 42 Metallosphaera cuprina 0 species 43687 1 45 Metallosphaera sedula species 0 1 2100760 78 genus 0 0 species Sulfolobus solfataricus 78 1 2287 4 2284 437 1 genus 0 Sulfolobus 1 no rank 0 45 1 2641160 Sulfolobus sp. A20 species 0 45 1 1891280 82 2285 1 species 0 Sulfolobus acidocaldarius species 0 Sulfolobus islandicus 309 43080 1 96 12914 1 genus 0 96 1 563177 0 species Acidianus hospitalis Thermoproteales order 0 1 1 2266 11 466 0 family 4 114378 161 0 genus 161 4 2268 Thermofilum carboxyditrophus 0 species 68 1483572 1 Thermofilum adornatus 0 species 61 1365176 1 16 1 2269 species 0 Thermofilum pendens 16 1550241 1 Thermofilum uzonense species 0 0 family 2267 6 304 genus 0 22 2276 1 species 0 Pyrobaculum islandicum 2277 1 22 genus 0 68 76886 1 68 76887 1 0 species Caldivirga maquilingensis 2 2270 96 genus 0 Thermoproteus tenax species 0 2271 1 29 184117 1 67 species 0 Thermoproteus uzoniensis 118 164450 2 0 genus Vulcanisaeta moutnovskia species 0 985052 1 36 82 1 164451 Vulcanisaeta distributa 0 species 0 phylum 651137 9 662 161 3 651142 no rank 0 genus 0 1 1593364 52 0 species Candidatus Nitrosopelagicus brevis 1 1410606 52 109 2 1825023 genus 0 Candidatus Nitrosotenuis sp. AQ6f 0 species 30 1846278 1 0 species Candidatus Nitrosotenuis cloacae 79 1603555 1 1 Nitrosopumilales 0 order 1 363 31932 4 0 family 362 338190 3 0 genus 1 1993653 176 1898749 1 176 Candidatus Nitrosomarinus catalina 0 species genus 0 186 2 338191 95 1580092 1 species 0 Candidatus Nitrosopumilus adriaticus species 0 Candidatus Nitrosopumilus sediminis 1229909 1 91 0 class 138 1643678 2 32 1968909 1 order 0 0 family 1968910 1 32 32 1 498374 genus 0 Candidatus Nitrosocaldus islandicus species 0 2045011 1 32 1 1033996 106 0 order family 0 1 1033997 106 497726 1 106 genus 0 106 1 1034015 Nitrososphaera viennensis species 0 1 1783276 13 clade 0 phylum 0 1 1801631 13 0 genus 13 2490204 1 13 1 1920749 Candidatus Micrarchaeota archaeon Mia14 0 species 205 28890 27593 0 phylum 1 Euryarchaeota 1 2875 41 183968 1 4 class 0 Thermococci 1 Thermococcales order 0 9 2871 2258 40 family 0 1 Thermococcaceae 1 39 2259 2862 0 genus 49 83867 1 49 971279 1 Palaeococcus pacificus 0 species 9 genus 0 Pyrococcus 1 2260 8 329 2629106 2 71 no rank 0 Pyrococcus sp. NA2 species 0 342949 1 30 0 species Pyrococcus sp. ST04 41 1183377 1 Pyrococcus kukulkanii species 0 23 1609559 1 0 species Pyrococcus horikoshii 63 1 53953 0 species Pyrococcus furiosus 100 2261 1 1 29292 24 Pyrococcus abyssi 0 species 39 1008460 1 species 0 Pyrococcus yayanosii Thermococcus genus 0 39 1 2263 29 2483 66 49899 1 species 0 Thermococcus profundus Thermococcus paralvinellae 0 species 1 582419 72 species 0 Thermococcus litoralis 1 2265 64 Thermococcus thioreducens 0 species 1 277988 71 0 species Thermococcus guaymasensis 1 110164 68 0 species Thermococcus onnurineus 1 342948 54 0 species Thermococcus kodakarensis 1 311400 51 Thermococcus piezophilus 0 species 1 1712654 62 57 1 71998 Thermococcus pacificus species 0 48 1 54262 species 0 Thermococcus chitonophagus 135 71997 1 species 0 Thermococcus gorgonarius Thermococcus eurythermalis species 0 84 1505907 1 Thermococcus barossii species 0 155 1 54077 133 172049 1 0 species Thermococcus sibiricus 195522 1 51 Thermococcus nautili species 0 79 1 163003 Thermococcus cleftensis 0 species 122 187880 1 Thermococcus radiotolerans 0 species 98 1 53952 0 species Thermococcus peptonophilus 0 no rank 558 2627626 6 1 1674923 57 Thermococcus sp. 2319x1 0 species 0 species Thermococcus sp. 5-4 116 1 2008440 species 0 Thermococcus sp. P6 23 1 122420 2016361 1 72 Thermococcus sp. EXT12c 0 species 1042877 1 104 0 species Thermococcus sp. 4557 186 246969 1 Thermococcus sp. AM4 0 species 96 1 72803 0 species Thermococcus siculi 112 55802 1 species 0 Thermococcus barophilus Thermococcus celer 0 species 2264 1 112 1 187878 96 species 0 Thermococcus gammatolerans 16626 102 2290931 0 clade 60 183963 8524 class 0 25 Halobacteria 1 1 Natrialbales order 0 13 2824 17 1644060 1 Natrialbaceae family 0 23 2811 1644061 16 170 2 2256 1 Natronobacterium 0 genus 1 Natronobacterium gregoryi 0 species 169 1 44930 1 Halopiger 0 genus 1 324 2 387342 387343 1 323 Halopiger xanaduensis species 0 1269201 1 181 genus 0 no rank 0 181 1 2621923 species 0 Salinarchaeum sp. Harcht-Bsk1 1333523 1 181 genus 0 327 29287 1 327 29288 1 Natronococcus occultus species 0 400 121871 2 genus 0 0 species Haloterrigena daqingensis 1 588898 172 species 0 Haloterrigena turkmenica 1 62320 228 1 1 0 genus Natrinema 459 3 88723 200 1 69525 0 species Natrinema pellirubrum no rank 0 1 2622230 258 258 1 406552 Natrinema sp. J7-2 species 0 0 genus 1 203193 340 Halobiforma lacisalsi species 0 340 1 229731 2 353799 299 3 genus 0 Halostagnicola 1 Halostagnicola larsenii 0 species 296 1 353800 genus 0 288 63742 1 1 13769 288 0 species Natrialba magadii 1 25 order 0 Haloferacales 2276 1644055 17 1254 1644056 7 0 family 4 2251 945 6 genus 0 Haloferax 1 318 1 2246 Haloferax volcanii species 0 213 2252 1 0 species Haloferax mediterranei 0 species Haloferax gibbonsii 1 35746 408 179 2 60846 1 genus 0 1 Halogeometricum 60847 1 178 Halogeometricum borinquense species 0 genus 0 293431 1 130 130 293091 1 species 0 Haloquadratum walsbyi 130 1 2678336 0 no rank 130 1 756883 0 species halophilic archaeon DL31 1 0 family 11 Halorubraceae 867 8 1963271 1 1 genus 0 Salinigranum 250 2 1644057 1 755307 249 Salinigranum rubrum species 0 56688 3 449 Halorubrum 8 0 genus 1 2247 1 182 Halorubrum lacusprofundi 0 species species 0 Halorubrum trapanicum 259 29284 1 157 2 1209988 1 Halopenitus 1 0 genus species 0 Halopenitus persicus 156 1048396 1 1 0 order 53 Halobacteriales 3399 2235 25 17 family 0 Haloarculaceae 1 1963268 15 2174 1 Halomicrobium 7 0 genus 244 2 203135 Halomicrobium mukohataei 0 species 1 57705 237 1 14 genus 0 Haloarcula 918 2237 5 0 no rank 216 2624677 1 Haloarcula sp. CBA1115 species 0 1592728 1 216 266 1 2238 0 species Haloarcula marismortui 51589 1 267 species 0 Haloarcula hispanica species 0 Haloarcula taiwanensis 1932004 1 155 genus 0 1 Natronomonas 1 63743 3 297 145 2257 1 Natronomonas pharaonis species 0 151 416273 1 Natronomonas moolapensis species 0 2 146825 424 genus 0 species 0 Halorhabdus utahensis 282 1 146826 Halorhabdus tiamatea 0 species 430914 1 142 1 Halorientalis 1 0 genus 274 1073987 2 1 2648975 273 no rank 0 273 1 1932360 Halorientalis sp. IM1011 0 species 2236 9 1172 Halobacteriaceae 0 family 2 1 Halobacterium 5 genus 0 1 4 2239 692 1407499 1 241 Halobacterium hubeiense 0 species 0 no rank 220 2668073 1 220 751944 1 Halobacterium sp. DL1 0 species species 0 Halobacterium salinarum 1 2242 226 1980514 1 174 genus 0 174 1 1873524 Halodesulfurarchaeum formicicum species 0 genus 0 77 1656823 1 species 0 Halanaeroarchaeum sulfurireducens 77 1 1604004 227 332246 2 1 0 genus 1 Halalkalicoccus 226 413810 1 0 species Halalkalicoccus jeotgali 1 50 0 class Methanomicrobia 8102 42 224756 Methanocellales 9 0 order 1 570264 5 358 570265 4 349 Methanocellaceae family 0 1 1 570266 3 348 Methanocella 2 0 genus 1 1 1175445 198 0 species Methanocella arvoryzae 1 1175444 148 species 0 Methanocella conradii 2191 11 2409 0 order 6 Methanomicrobiales 1 5 2194 1131 family 0 958 4 45989 1 0 genus 4 Methanoculleus 340 2198 1 species 0 Methanoculleus marisnigri 256 2619537 1 0 no rank 0 species Methanoculleus sp. MAB1 256 86622 1 0 species Methanoculleus bourgensis 358 83986 1 230355 1 173 0 genus Methanolacinia petrolearia species 0 173 1 54120 family 0 229 1 88404 genus 0 229 1 2192 Methanocorpusculum labreanum 0 species 83984 1 229 1198451 3 793 family 0 489 2 395331 0 genus Methanoregula formicica 0 species 399 1 882104 90 1 358766 0 species Methanoregula boonei 0 genus 304 475087 1 475088 1 304 Methanosphaerula palustris 0 species 0 family 250 196137 1 1 2202 250 genus 0 250 1 2203 0 species Methanospirillum hungatei order 0 94695 25 5285 143067 4 465 0 family 3 Methanosaetaceae 1 1 Methanothrix 0 genus 1 462 3 2222 1 2223 188 Methanothrix soehngenii 0 species species 0 Methanosaeta harundinacea 301375 1 273 family 0 4820 2206 21 0 genus 2 2175 299 Methanohalophilus halophilus species 0 2177 1 162 137 1 2176 Methanohalophilus mahii species 0 0 genus 1 101191 210 Methanomethylovorans hollandica 0 species 210 1 101192 0 genus 180 2321 1 1 2322 180 species 0 Methanohalobium evestigatum genus 0 225 196136 1 0 species Methanosalsum zhilinae 225 1 39669 genus 0 1 2220 110 110 1 420950 0 species Methanolobus psychrophilus 2225 2 238 genus 0 species 0 Methanococcoides burtonii 1 29291 88 0 species Methanococcoides methylutens 150 1 2226 3558 2207 13 1 0 genus 8 Methanosarcina species 0 Methanosarcina vacuolata 2215 1 246 1 38027 356 Methanosarcina siciliae species 0 species 0 Methanosarcina barkeri 712 1 2208 418008 1 309 species 0 Methanosarcina horonobensis 4 2644672 913 no rank 0 species 0 Methanosarcina sp. Kolksee 327 1434099 1 Methanosarcina sp. MTP4 0 species 220 1434100 1 Methanosarcina sp. WH1 species 0 192 1 1434102 Methanosarcina sp. WWM596 species 0 1434103 1 174 Methanosarcina lacustris species 0 172 170861 1 species 0 Methanosarcina mazei 1 2209 369 Methanosarcina acetivorans species 0 293 1 2214 0 species Methanosarcina thermophila 180 1 2210 183980 10 786 Archaeoglobi 1 0 class 1 785 9 2231 0 order 9 2232 785 0 family 1 54260 117 genus 0 54261 1 117 0 species Ferroglobus placidus 0 genus 3 Geoglobus 1 190818 3 345 species 0 Geoglobus ahangari 113653 1 78 1 565033 264 species 0 Geoglobus acetivorans 1 1 0 genus Archaeoglobus 323 5 2233 2234 1 120 0 species Archaeoglobus fulgidus 94 1 58290 Archaeoglobus veneficus 0 species 84156 1 28 Archaeoglobus profundus species 0 species 0 Archaeoglobus sulfaticallidus 80 1 1316941 1696 2283796 16 0 clade 1 class 0 8 Thermoplasmata 1619 183967 14 order 0 872 8 2301 280 90142 2 0 family 74968 2 280 genus 0 Ferroplasma acidiphilum species 0 74969 1 121 159 1 97393 species 0 Ferroplasma acidarmanus 0 family 1 46630 120 0 genus 120 1 46631 120 82076 1 0 species Picrophilus torridus 1747776 2 81 0 family 1 Cuniculiplasmataceae 1 80 1 1747777 0 genus 0 species Cuniculiplasma divulgatum 1 1673428 80 2 46659 87 family 0 genus 0 2 2302 87 43 1 2303 Thermoplasma acidophilum species 0 44 50339 1 Thermoplasma volcanium species 0 1 1919231 304 no rank 0 1054217 1 304 0 species Thermoplasmatales archaeon BRNA1 1 1234666 188 no rank 0 188 1 1495144 methanogenic archaeon ISO4-H5 species 0 0 order 551 1235850 4 0 family 343 1577788 2 1 1080709 187 genus 0 Candidatus Methanomassiliicoccus intestinalis 0 species 1406512 1 187 156 1607807 1 0 genus 156 1 1577791 0 species Candidatus Methanoplasma termitum family 0 208 2517203 2 1 0 genus 1 Candidatus Methanomethylophilus 208 1291539 2 1 1291540 207 0 species Candidatus Methanomethylophilus alvus 2 1803510 77 clade 0 genus 0 2 379546 77 46 1 379547 0 species Aciduliprofundum boonei 0 no rank 2633939 1 31 Aciduliprofundum sp. MAR08-339 0 species 31 673860 1 0 clade 5609 2283794 35 2374 15 183939 1 0 class 1 Methanococci order 0 14 2182 2373 196117 8 910 0 family genus 0 117 196119 1 2189 1 117 0 species Methanotorris igneus Methanocaldococcus 0 genus 1 1 7 196118 793 Methanocaldococcus vulcanius species 0 101 73913 1 67760 1 110 Methanocaldococcus infernus species 0 1 83171 155 0 species Methanocaldococcus fervens 0 species Methanocaldococcus jannaschii 78 1 2190 197 1301915 1 species 0 Methanocaldococcus bathoardescens no rank 0 151 2641196 1 644281 1 151 Methanocaldococcus sp. FS406-22 0 species family 0 6 2183 1463 1308 2184 5 1 1 genus 0 Methanococcus 149 2188 1 0 species Methanococcus voltae Methanococcus vannielii 0 species 176 2187 1 species 0 Methanococcus maripaludis 803 1 39152 1 42879 179 species 0 Methanococcus aeolicus 0 genus 155862 1 155 155863 1 155 Methanothermococcus okinawensis species 0 3235 183925 20 1 Methanobacteria 5 0 class order 0 3230 2158 19 0 family 83 1 2178 1 2179 83 0 genus species 0 Methanothermus fervidus 83 1 2180 family 0 3147 18 2159 6 2172 1736 genus 0 1 2173 389 Methanobrevibacter smithii species 0 species 0 Methanobrevibacter olleyae 1 294671 365 Methanobrevibacter millerae 0 species 1 230361 275 0 no rank 2 2638681 423 166 1 224719 0 species Methanobrevibacter sp. AbM4 Methanobrevibacter sp. YE315 0 species 257 1 1609968 Methanobrevibacter ruminantium 0 species 284 1 83816 genus 0 2160 7 848 2 2627676 177 0 no rank 1911685 1 90 0 species Methanobacterium sp. MZ-A1 Methanobacterium sp. MB1 species 0 87 1 1379702 164 1 2162 Methanobacterium formicicum species 0 Methanobacterium paludis species 0 1 868131 121 1 59277 76 species 0 Methanobacterium subterraneum 0 species Methanobacterium congolense 118062 1 170 0 species Methanobacterium lacus 140 1 877455 145260 4 162 genus 0 0 no rank 42 2631116 1 0 species Methanothermobacter sp. CaT2 1 866790 42 Methanothermobacter marburgensis species 0 145263 1 56 1 145261 23 Methanothermobacter wolfeii 0 species Methanothermobacter thermautotrophicus species 0 41 1 145262 401 2316 1 0 genus 401 2317 1 0 species Methanosphaera stadtmanae 45 superkingdom 0 Bacteria 1 4285 2 13171693 0 phylum 20653 55 203691 37 class 0 Spirochaetia 1 203692 55 20653 1643686 7 3468 Brachyspirales 0 order 1 1 0 family 17 Brachyspiraceae 1 143786 6 3467 1 0 genus 184 Brachyspira 3450 5 29521 Brachyspira hyodysenteriae species 0 784 1 159 577 84378 1 Brachyspira murdochii species 0 84377 1 753 Brachyspira intermedia 0 species 52584 1 1152 Brachyspira pilosicoli species 0 1974 8 1643688 order 0 1 Leptospiraceae 0 family 1 1974 170 8 0 genus 159 1 338321 159 29510 1 species 0 Turneriella parva 6 171 1814 Leptospira genus 0 3 1 Leptospira borgpetersenii species 0 354 1 174 699 1 173 Leptospira interrogans species 0 192 1 28452 Leptospira alstonii 0 species Leptospira santarosai 0 species 317 1 28183 species 0 Leptospira biflexa 1 172 249 39 136 15174 0 order 217 Spirochaetales 1 1893 1643685 16 family 0 138 8 1032 genus 0 12 Borrelia 1 Borrelia hermsii 0 species 1 140 99 Borrelia recurrentis 0 species 1 44449 120 Borrelia turicatae species 0 142 1 180 Borrelia miyamotoi 0 species 1 47466 184 Borrelia anserina species 0 154 1 143 species 0 Borrelia parkeri 155 141 1 Borrelia duttonii 0 species 1 40834 128 861 8 64895 1 54 genus 0 Borreliella Borreliella bavariensis 0 species 1 664662 85 species 0 Borreliella garinii 174 29519 1 Borreliella valaisiana species 0 133 62088 1 0 species Borreliella afzelii 29518 1 129 1 139 136 Borreliella burgdorferi species 0 66 1 64897 0 species Borreliella bissettii 84 1674146 1 Borrelia mayonii species 0 13064 137 22 1 Spirochaetaceae 51 0 family 1616789 1 642 genus 0 1 1307761 642 Salinispira pacifica species 0 genus 0 588 1911556 1 species 0 Sediminispirochaeta smaragdinae 55206 1 588 5 0 genus Sphaerochaeta 1 399320 4 1652 0 species Sphaerochaeta coccoides 518 273376 1 Sphaerochaeta pleomorpha 0 species 444 1 1131707 685 1 1131703 0 species Sphaerochaeta globosa 8992 12 157 1 89 0 genus Treponema 160 1 27 Treponema pallidum species 0 0 species Treponema brennaborense 81028 1 979 1030 1 2638727 0 no rank 1 1539298 1030 Treponema sp. OMZ 838 species 0 1 88058 665 Treponema primitia species 0 Treponema paraluiscuniculi species 0 1 53435 22 0 species Treponema pedis 360 409322 1 625 158 1 Treponema denticola 0 species species 0 Treponema putidum 1 221027 1411 species 0 Treponema azotonutricium 689 150829 1 1 167 2607 Treponema succinifaciens species 0 Treponema caldarium species 0 488 1 215591 2 genus 0 Spirochaeta 1 3 146 1139 Spirochaeta thermophila species 0 633 1 154 504 46355 1 0 species Spirochaeta africana phylum 0 200938 5 646 646 118001 5 1 class 0 3 Chrysiogenetes 189769 4 643 order 0 7 Chrysiogenales 1 4 0 family Chrysiogenaceae 1 3 189770 636 632 393029 2 1 0 genus 20 Desulfurispirillum 612 936456 1 Desulfurispirillum indicum species 0 609 4 1930617 0 phylum 4 1962850 609 Calditrichae 2 0 class 1 607 1962852 3 order 0 1 1 family 0 Calditrichaceae 607 1962854 3 genus 0 1 Caldithrix 1 2 187144 606 1 187145 605 Caldithrix abyssi 0 species phylum 0 2138240 2 97 2 2138243 97 class 0 2 2138246 97 order 0 97 2 2138247 1 0 family 1 Coprothermobacteraceae 96 68335 1 genus 0 96 1 35786 0 species Coprothermobacter proteolyticus 200918 41 7194 phylum 0 188708 41 7194 Thermotogae 0 class 7 1 1673 1643947 8 1 0 order 6 Petrotogales family 0 7 1643949 1667 1 16 genus 0 Marinitoga 1072 160798 3 527 1 2640159 no rank 0 species 0 Marinitoga sp. 1137 527 1 1545835 149715 1 529 0 species Marinitoga piezophila 2 1511648 345 Defluviitoga 0 genus 10 1 0 species Defluviitoga tunisiensis 1006576 1 335 2 28236 250 Petrotoga 0 genus 11 1 239 69499 1 species 0 Petrotoga mobilis 28 2419 4956 0 order 4 Thermotogales 1 10 1643950 2008 3 family 0 Fervidobacteriaceae 1 688 4 2422 1 Fervidobacterium 11 0 genus 0 species Fervidobacterium islandicum 2423 1 187 0 species Fervidobacterium pennivorans 301 1 93466 2424 1 189 species 0 Fervidobacterium nodosum 1317 2420 5 1 4 genus 0 Thermosipho 292 46541 1 species 0 Thermosipho melanesiensis 489 2 2676525 0 no rank 1 1462747 244 Thermosipho sp. 1063 0 species 1437364 1 245 0 species Thermosipho sp. 1070 532 2421 1 species 0 Thermosipho africanus 2944 17 188709 1 8 0 family Thermotogaceae 1643951 5 931 0 genus 19 Pseudothermotoga 1 Pseudothermotoga lettingae 0 species 253 177758 1 species 0 Pseudothermotoga elfii 242 38322 1 Pseudothermotoga thermarum 0 species 232 1 119394 Pseudothermotoga hypogea 0 species 185 1 57487 41 0 genus Thermotoga 1 11 2335 2005 0 species Thermotoga petrophila 167 93929 1 210 1 1508420 Thermotoga profunda 0 species 0 species Thermotoga naphthophila 217 1 93930 no rank 0 779 2631113 4 1157948 1 139 0 species Thermotoga sp. 2812B species 0 Thermotoga sp. Cell2 1157947 1 170 126738 1 273 Thermotoga sp. RQ7 species 0 0 species Thermotoga sp. RQ2 197 126740 1 286 1 2337 species 0 Thermotoga neapolitana Thermotoga maritima species 0 2336 1 134 1 1508419 171 species 0 Thermotoga caldifontis order 0 1 Kosmotogales 1 4 1643946 558 1643948 3 557 0 family genus 0 1 1184396 123 Mesotoga prima 0 species 1 1184387 123 434 2 651456 genus 0 1 651457 136 Kosmotoga olearia 0 species 1330330 1 298 Kosmotoga pacifica 0 species clade 0 1783270 353 7747698 phylum 0 456828 2 311 456826 2 311 Candidatus Cloacimonas 1 genus 0 1 456827 1 310 0 species Candidatus Cloacimonas acidaminovorans phylum 0 65842 4 909 4 204430 909 4 class 0 Fibrobacteria 1 218872 3 905 0 order 2 Fibrobacterales 1 1 6 0 family Fibrobacteraceae 903 204431 2 897 1 832 genus 0 Fibrobacter succinogenes 0 species 897 1 833 0 clade 68336 339 7743932 phylum 0 1134404 7 889 1 1 0 class Ignavibacteria 889 795747 7 Ignavibacteriales order 0 2 1 795748 6 888 487 795749 3 1 1 family 0 Ignavibacteriaceae 486 2 795750 1 Ignavibacterium 1 genus 0 591197 1 485 0 species Ignavibacterium album 0 family 399 2 1334117 1134403 2 399 Melioribacter genus 0 1 1 398 1134405 1 Melioribacter roseus species 0 7807 1090 20 0 phylum 1 Chlorobia 23 0 class 7807 191410 20 1 Chlorobiales 0 order 119 7784 19 191411 7665 191412 18 1 Chlorobiaceae 36 family 0 genus 0 4 1101 1719 1102 1 422 0 species Prosthecochloris aestuarii 1297 2632826 3 no rank 0 Prosthecochloris sp. CIB 2401 0 species 1 1868325 304 1 281093 722 species 0 Prosthecochloris sp. GSB1 271 1974213 1 Prosthecochloris sp. HL-130-GSB 0 species no rank 0 8 274493 2796 3 genus 0 Chlorobium 1 1091 5 1901 species 0 Chlorobium limicola 540 1 1092 species 0 Chlorobium phaeovibrioides 367 1 1094 Chlorobium phaeobacteroides 0 species 1 1096 766 225 337090 1 0 species Chlorobium chlorochromatii 3 1099 895 2 genus 0 Pelodictyon 1 Pelodictyon phaeoclathratiforme species 0 265 1 34090 Pelodictyon luteolum 0 species 1 1100 628 genus 0 100715 1 426 Chloroherpeton thalassium 0 species 100716 1 426 1 9 genus 0 Chlorobaculum 2688 256319 4 species 0 Chlorobaculum tepidum 687 1 1097 Chlorobaculum parvum 0 species 1 274539 844 1 274537 1148 0 species Chlorobaculum limnaeum 1 phylum 0 53 Bacteroidetes 7735236 976 312 2019 1937959 5 1 2 class 0 Saprospiria 4 1936988 2017 1 order 0 Saprospirales 1 1937961 2 1626 family 0 3 genus 0 Haliscomenobacter 1 2349 2 1626 Haliscomenobacter hydrossis species 0 1 2350 1623 family 0 390 1 89374 1007 1 390 0 genus 1 1008 390 0 species Saprospira grandis 68 200643 7573914 68 class 0 Bacteroidia 1 58 171549 7568992 Bacteroidales 0 order 284 1 3141564 333046 5 no rank 0 754 2 511434 1 Candidatus Azobacteroides genus 0 10 Candidatus Azobacteroides pseudotrichonymphae species 0 511435 1 744 0 genus 3140810 3 909656 78178 1 376805 0 species Bacteroides salanitronis 1 821 2364482 0 species Bacteroides vulgatus 357276 1 698150 0 species Bacteroides dorei 468772 7 2005525 1 37 family 0 Tannerellaceae 441843 375288 3 1 0 genus 89 Parabacteroides 108151 1 823 Parabacteroides distasonis species 0 0 no rank 333603 1 2649774 1 2025876 333603 Parabacteroides sp. CT06 0 species 1 Tannerella genus 0 23 26892 195950 3 19341 28112 1 Tannerella forsythia species 0 2620507 1 7528 0 no rank 712710 1 7528 Tannerella sp. oral taxon HOT-286 species 0 24 family 0 Rikenellaceae 1 171550 4 168685 Alistipes genus 0 34 1 239759 2 166502 species 0 Alistipes finegoldii 166468 1 214856 2159 1611681 1 genus 0 species 0 Mucinivorans hirudinis 2159 1 1433126 family 0 11706 2005520 5 1 0 genus 10 Petrimonas 5185 307628 2 1642646 1 5175 Petrimonas mucosa species 0 17 0 genus Proteiniphilum 1 294702 2 4683 0 species Proteiniphilum saccharofermentans 1642647 1 4666 1838 1784836 1 0 genus 0 species Fermentimonas caenicola 1 1562970 1838 1 Barnesiellaceae 0 family 6 112703 2005519 3 1 9 0 genus Barnesiella 112697 2 397864 1 397865 112688 Barnesiella viscericola species 0 171551 4 10892 family 0 12 Porphyromonadaceae 1 10880 3 836 1 Porphyromonas 16 genus 0 1 837 9635 0 species Porphyromonas gingivalis 28123 1 1229 Porphyromonas asaccharolytica 0 species 255687 1853231 3 1 1 family 0 Odoribacteraceae genus 0 5 Odoribacter 1 283168 2 255686 1 28118 255681 species 0 Odoribacter splanchnicus 815 11 3229097 27 family 0 Bacteroidaceae 1 genus 0 50003 Bacteroides 1 10 816 3229070 Bacteroides fragilis 0 species 820722 817 1 Bacteroides cellulosilyticus species 0 246787 1 204017 Bacteroides zoogleoformans species 0 129526 28119 1 1 28113 154320 species 0 Bacteroides heparinolyticus species 0 Bacteroides ovatus 367600 1 28116 0 species Bacteroides thetaiotaomicron 818 1 520840 207079 1 290053 0 species Bacteroides helcogenes 1 47678 524893 Bacteroides caccae 0 species 1 1796613 250070 Bacteroides caecimuris 0 species 1 family 0 21 Prevotellaceae 165683 11 171552 1 Prevotella 94 genus 0 165662 838 10 28129 1 5626 Prevotella denticola 0 species Prevotella enoeca species 0 3901 1 76123 123707 1 28131 species 0 Prevotella intermedia 3908 28132 1 species 0 Prevotella melaninogenica no rank 0 2638335 1 1213 0 species Prevotella sp. oral taxon 299 1213 652716 1 13053 52227 1 Prevotella dentalis 0 species 0 species Prevotella jejuni 3969 1177574 1 5912 839 1 Prevotella ruminicola 0 species species 0 Prevotella fusca 4279 589436 1 185291 1 1318 0 no rank 1318 1400053 1 species 0 Bacteroidales bacterium CF 1 Paludibacteraceae 0 family 4 2601 2005523 3 1 Paludibacter 0 genus 1 2597 346096 2 2596 1 185300 Paludibacter propionicigenes species 0 1 Marinilabiliales 1 order 0 4854 9 1970189 1471398 3 2437 3 family 0 Prolixibacteraceae 1 2 1471399 2434 3 genus 0 Draconibacterium 1 2431 1168034 1 Draconibacterium orientale 0 species 0 family 874 1573805 1 874 2060722 1 genus 0 874 1 1717717 Marinifilaceae bacterium SPP2 species 0 911 2 558415 1 Marinilabiliaceae 0 family 2 0 genus 909 1 1193324 0 species Alkalitalea saponilacus 1 889453 909 Salinivirgaceae family 0 1 1 2 1970190 631 0 genus 1970191 1 630 species 0 Salinivirga cyanobacteriivorans 630 1 1307839 1100069 7 4153 41 0 order Bacteroidetes Order II. Incertae sedis 1 4112 6 563843 1 Rhodothermaceae 21 family 0 1833 2 29548 1 genus 0 8 Rhodothermus species 0 Rhodothermus marinus 1825 29549 1 1196022 1 1545 no rank 0 Rhodothermaceae bacterium RA 0 species 1545 1779382 1 1 0 genus 1 Salinibacter 713 146918 2 Salinibacter ruber species 0 712 146919 1 15 1853228 9182 Chitinophagia class 0 3 1 9179 14 1853229 1 Chitinophagales order 0 8 9171 563835 13 1 family 0 13 Chitinophagaceae 398041 1 679 0 genus species 0 Flavisolibacter tropicus 679 1 1492898 1229 2 354354 1 genus 0 5 Niastella 0 species Niastella koreensis 1224 354356 1 9 genus 0 Chitinophaga 1 3 79328 2858 Chitinophaga pinensis 0 species 1 79329 1789 2029983 1 1060 Chitinophagaceae bacterium 13 0 species 2 649460 1518 Filimonas genus 0 4 1 1 477680 1514 Filimonas lacunae species 0 1769012 1 739 0 genus 739 2636138 1 0 no rank 0 species Arachidicoccus sp. BS20 739 1850526 1 2135 379899 3 1 Niabella genus 0 2 Niabella ginsenosidivorans 0 species 1176587 1 1021 1112 446683 1 0 species Niabella soli 117747 23 15976 Sphingobacteriia 11 0 class 1 200666 22 15965 Sphingobacteriales 9 0 order 1 84566 21 15956 15 0 family Sphingobacteriaceae 1 0 no rank 84568 1 968 1 1986952 968 0 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 Pedobacter 4 0 genus 5071 6 84567 1023 430522 1 Pedobacter steynii 0 species 899 1 188932 species 0 Pedobacter cryoconitis 861 1 363852 species 0 Pedobacter ginsengisoli 2628915 1 1087 no rank 0 Pedobacter sp. PACM 27299 0 species 1727164 1 1087 Pedobacter heparinus species 0 984 1 1197 1145 2 929509 1 Solitalea 0 genus 2 Solitalea canadensis 0 species 1143 995 1 genus 0 1050 1649482 1 Pseudopedobacter saltans 0 species 1050 151895 1 Mucilaginibacter 0 genus 14 1 4 423349 2977 Mucilaginibacter gotjawali species 0 1224 1 1550579 species 0 Mucilaginibacter sp. BJC16-A31 689 1234841 1 no rank 0 2617802 1 1050 Mucilaginibacter sp. PAMC 26640 species 0 1 1300914 1050 1 7 0 genus Sphingobacterium 4730 6 28453 Sphingobacterium mizutaii 0 species 1010 1 979 3744 2609468 4 0 no rank Sphingobacterium sp. ML3W species 0 1538644 1 709 1 1933220 1098 Sphingobacterium sp. B29 species 0 1 2003121 1030 Sphingobacterium sp. G1-14 species 0 Sphingobacterium sp. 21 species 0 1 743722 907 class 0 40 Cytophagia 1 53 768503 40643 768507 52 40603 Cytophagales 130 0 order 1 712 1937968 1 0 family 0 genus 712 1 1937972 999 1 712 species 0 Bernardetia litoralis 200667 4 2410 Flammeovirgaceae 7 family 0 1 no rank 0 1 340671 1184 Flammeovirgaceae bacterium 311 species 0 1184 1257021 1 2 genus 0 Flammeovirga 1 2 59739 1219 1217 1 2637820 0 no rank 1191459 1 1217 Flammeovirga sp. MY04 species 0 1595 2 1853234 0 family Persicobacter 4 genus 0 1 2 59740 1595 1 2664020 1591 no rank 0 Persicobacter sp. JZB09 0 species 1085624 1 1591 1 Cyclobacteriaceae 1 family 0 3450 563798 8 906 2 390846 1 3 0 genus Echinicola Echinicola vietnamensis 0 species 903 1 390884 0 genus 535 232244 1 Belliella baltica species 0 232259 1 535 0 genus 246875 1 563 1727163 1 563 Algoriphagus sp. M8-2 species 0 1 Cyclobacterium 1 0 genus 1445 3 68288 659 104 1 0 species Cyclobacterium marinum 785 1 320787 Cyclobacterium amurskyense 0 species Cytophagaceae 7 family 0 1 16 89373 10632 Dyadobacter 0 genus 3 1 120831 2 1491 94254 1 1488 Dyadobacter fermentans species 0 1 Cytophaga 2 genus 0 984 978 2 0 species Cytophaga hutchinsonii 1 985 982 1 0 genus 8 Fibrella 897 861914 2 0 no rank 2620963 1 889 1 1834519 889 0 species Fibrella sp. ES10-3-2-2 107 6 4878 Spirosoma 0 genus 25 1 0 species Spirosoma sp. HA7 1 2057025 996 1 564064 949 species 0 Spirosoma rigui species 0 Spirosoma aerolatum 1211326 1 931 Spirosoma radiotolerans species 0 1379870 1 764 species 0 Spirosoma montaniterrae 1178516 1 1213 0 genus 774 1 319458 Leadbetterella byssophila 0 species 774 1 316068 1 Runella 1 0 genus 1601 2 105 Runella slithyformis 0 species 1 106 1600 family 0 2 1501348 448 265 1 281119 0 genus species 0 Candidatus Amoebophilus asiaticus 265 1 281120 genus 0 273135 1 183 1 2641185 183 0 no rank 183 249402 1 Cardinium endosymbiont of Encarsia pergandiella species 0 20696 1853232 16 1 0 family 36 Hymenobacteraceae 14836 89966 8 1 Hymenobacter 57 0 genus 2352 1 1411621 Hymenobacter sedentarius species 0 Hymenobacter swuensis species 0 2087 1446467 1 10340 5 2615202 0 no rank 2708 1356852 1 species 0 Hymenobacter sp. APR13 Hymenobacter sp. DG25B 0 species 1756 1385664 1 Hymenobacter sp. PAMC 26628 species 0 1 1484118 2533 0 species Hymenobacter sp. DG25A 1350 1 1385663 1993 1 1484116 0 species Hymenobacter sp. PAMC 26554 1379908 4 3391 Rufibacter 6 genus 0 1 2 2639626 2108 no rank 0 Rufibacter sp. DG31D 0 species 1379910 1 915 Rufibacter sp. DG15C species 0 1193 1379909 1 Rufibacter tibetensis species 0 1277 1 512763 Pontibacter genus 0 13 1 3 323449 2433 1 400092 1045 Pontibacter korlensis species 0 1375 388950 1 0 species Pontibacter akesuensis 530 2 2762301 0 family Marivirga 14 0 genus 1 2 869806 530 1 1006 516 Marivirga tractuosa 0 species 117743 140 89296 Flavobacteriia 43 class 0 1 35 0 order Flavobacteriales 1 200644 139 89253 163 2 313602 0 no rank 96 1 336809 0 genus species 0 Candidatus Sulcia muelleri 1 336810 96 0 genus 67 1 1940138 67 1415657 1 0 species Candidatus Walczuchella monophlebidarum 2762318 20 32250 0 family 0 genus 1013 1 326 326 1014 1 0 species Weeksella virosa 10132 2782232 10 no rank 0 8465 59732 9 1 Chryseobacterium 0 genus 38 862 1685010 1 species 0 Chryseobacterium glaciei Chryseobacterium camelliae species 0 1104 1 1265445 1023 1324352 1 Chryseobacterium gallinarum 0 species 253 1 1698 Chryseobacterium indologenes 0 species species 0 Chryseobacterium piperi 731 558152 1 3009 2593645 3 0 no rank Chryseobacterium sp. IHB B 17019 0 species 1058 1 1721091 Chryseobacterium sp. StRB126 species 0 825 878220 1 1126 2015076 1 species 0 Chryseobacterium sp. T16E-39 1 2782228 1667 0 genus Chryseobacterium taklimakanense species 0 1667 1 536441 Elizabethkingia 33 genus 0 1 6 308865 7472 Elizabethkingia miricola 0 species 172045 1 1849 0 species Elizabethkingia anophelis 1 1117645 2733 Elizabethkingia genomosp. 4 species 0 1756150 1 717 953 1 1756149 Elizabethkingia genomosp. 3 species 0 238 1 1187 Elizabethkingia meningoseptica species 0 13023 28250 2 1 15 0 genus Ornithobacterium 28251 1 13008 0 species Ornithobacterium rhinotracheale genus 0 34084 1 1297 1297 34085 1 Riemerella anatipestifer 0 species 0 family 206 2 1755828 1 genus 0 Ichthyobacterium 1 1755829 2 206 0 species Ichthyobacterium seriolicida 205 1 242600 1050 9 39782 0 family 1050 34098 9 1 Blattabacterium 0 genus 11 1653831 1 154 0 species Blattabacterium cuenoti 6 2647581 771 0 no rank 1316444 1 134 Blattabacterium sp. (Nauphoeta cinerea) species 0 0 species Blattabacterium sp. (Mastotermes darwiniensis) 39768 1 152 species 0 Blattabacterium sp. (Blattella germanica) 195 624186 1 165 1 1186051 species 0 Blattabacterium sp. (Blaberus giganteus) Blattabacterium sp. (Blatta orientalis) species 0 49 1 367806 Blattabacterium sp. (Periplaneta americana) 0 species 76 1 367488 0 species Blattabacterium punctulatus 164514 1 114 0 family 1853230 2 912 332102 2 912 Fluviicola 0 genus 34 1 1 191579 878 Fluviicola taffensis 0 species Flavobacteriaceae 274 family 0 1 49546 101 54038 0 genus 216431 1 354 313588 1 354 Croceibacter atlanticus 0 species 2812 5 292691 1 Gramella 0 genus 2 0 species Gramella sp. LPB0144 1 1913577 485 668 411153 1 0 species Gramella forsetii Gramella flava species 0 878 1486245 1 species 0 Gramella sp. SH35 779 1 2126553 0 genus 729 143222 1 0 no rank 2633436 1 729 0 species Salegentibacter sp. T436 1 1729720 729 336276 1 329 0 genus 1 2615019 329 no rank 0 329 2058135 1 species 0 Olleya sp. Bg11-27 466 2 358023 1 0 genus 7 Lutibacter 1 1622118 459 0 species Lutibacter profundi 430 389486 2 1 Sediminicola 0 genus 1 429 1 2648869 0 no rank species 0 Sediminicola sp. YIK13 1 1453352 429 genus 0 1518147 1 489 489 1790137 1 species 0 Wenyingzhuangia fucanilytica 407 1176327 1 0 genus 2636237 1 407 no rank 0 0 species Aureitalea sp. RR4-38 407 1 2094025 590 393005 2 1 genus 0 2 Tamlana 0 species Tamlana sp. UJ94 2069432 1 588 1649495 1 456 0 genus no rank 0 456 1 2622645 1 1936081 456 species 0 Seonamhaeicola sp. S2-3 1 Cellulophaga 1 0 genus 2089 104264 4 species 0 Cellulophaga baltica 661 1 76594 Cellulophaga algicola 0 species 659 59600 1 Cellulophaga lytica 0 species 1 979 768 genus 0 1 261827 636 636 1 1736674 Algibacter alginicilyticus species 0 1876 104267 5 1 Tenacibaculum genus 0 4 0 species Tenacibaculum dicentrarchi 669041 1 388 427 1 1850252 Tenacibaculum todarodis 0 species 1 107401 373 0 species Tenacibaculum maritimum species 0 Tenacibaculum jejuense 584609 1 684 291183 4 1339 Lacinutrix 2 0 genus 1 815 2647285 2 0 no rank 1 983544 423 0 species Lacinutrix sp. 5H-3-7-4 Lacinutrix sp. Bg11-31 species 0 392 1 2057808 Lacinutrix venerupis species 0 1 1486034 522 3425 76831 5 1 75 0 genus Myroides Myroides odoratimimus 0 species 1 76832 1786 Myroides profundi species 0 1 480520 522 no rank 0 2 2642485 1042 Myroides sp. A21 species 0 541 1583100 1 0 species Myroides sp. ZB35 1 1458492 501 Nonlabens genus 0 6 1 5 363408 1493 0 species Nonlabens sediminis 1 319236 278 Nonlabens dokdonensis 0 species 328515 1 472 2 2615035 737 no rank 0 Nonlabens sp. MB-3u-79 0 species 351 1 2058134 1 1476901 386 Nonlabens sp. MIC269 species 0 1 1209327 647 genus 0 647 1 1803846 0 species Flavivirga eckloniae 0 genus 83612 1 376 species 0 Psychroflexus torquis 57029 1 376 4 326319 1129 Dokdonia genus 0 3 1 259 1 326320 Dokdonia donghaensis species 0 867 2615033 2 0 no rank Dokdonia sp. 4H-3-7-5 0 species 447 1 983548 species 0 Dokdonia sp. MED134 313590 1 420 no rank 0 61432 2 1427 Flavobacteriaceae bacterium 3519-10 species 0 1 531844 812 Flavobacteriaceae bacterium UJ101 species 0 615 1 1150389 1209 111500 2 0 genus 579 516051 1 Muricauda lutaonensis 0 species 630 111501 1 species 0 Muricauda ruestringensis 1 9 0 genus Flavobacterium 6838 237 9 338 1 1763534 0 species Flavobacterium crassostreae 0 species Flavobacterium commune 920 1 1306519 1288 996 1 species 0 Flavobacterium columnare 384 96345 1 Flavobacterium psychrophilum species 0 Flavobacterium johnsoniae 0 species 2183 986 1 312277 1 513 Flavobacterium indicum 0 species Flavobacterium gilvum species 0 1 1492737 810 393 1 55197 Flavobacterium branchiophilum species 0 Zobellia 5 genus 0 1 112040 2 560 555 63186 1 Zobellia galactanivorans species 0 Winogradskyella 0 genus 2 1 3 286104 840 0 no rank 2 2615021 838 393 1 754409 Winogradskyella sp. PG-2 0 species 1 1936080 445 Winogradskyella sp. J14-2 species 0 0 genus 2 225842 483 no rank 0 2644710 2 483 Formosa sp. Hel3_A1_48 0 species 226 1 1336795 species 0 Formosa sp. Hel1_33_131 1 1336794 257 0 genus 389 1 153265 389 101385 1 species 0 Aequorivita sublithincola 790 2 252306 1 genus 0 2 Robiginitalea Robiginitalea biformata species 0 788 1 252307 genus 0 178469 1 641 Arenibacter algicola species 0 1 616991 641 7 genus 0 Polaribacter 1 52959 6 3118 0 species Polaribacter vadi 1774273 1 725 1 996801 797 Polaribacter reichenbachii species 0 no rank 0 1589 196858 3 1529069 1 509 Polaribacter sp. BM10 0 species 1 313598 568 Polaribacter sp. MED152 species 0 1 2058137 512 Polaribacter sp. ALD11 species 0 1 genus 0 3 Maribacter 2389 252356 5 0 no rank 2615042 3 1755 1836467 1 687 species 0 Maribacter sp. T28 species 0 Maribacter sp. HTCC2170 313603 1 480 Maribacter sp. 1_2014MBL_MicDiv 0 species 1644130 1 588 Maribacter cobaltidurans species 0 631 1 1178778 genus 0 633 2700084 1 Lutibacter sp. LPB0138 0 species 1 1850246 633 genus 0 28 Capnocytophaga 1 15 1016 12728 Capnocytophaga ochracea 0 species 1018 1 746 species 0 Capnocytophaga gingivalis 1017 1 658 947 28188 1 0 species Capnocytophaga canimorsus 0 species Capnocytophaga haemolytica 1 45243 699 1686 327575 1 Capnocytophaga leadbetteri species 0 1714 1 1019 species 0 Capnocytophaga sputigena 866 1 1848904 0 species Capnocytophaga stomatis Capnocytophaga cynodegmi 0 species 441 28189 1 2640652 6 4943 0 no rank Capnocytophaga sp. H2931 species 0 438 1 1945657 species 0 Capnocytophaga sp. H4358 367 1 1945658 Capnocytophaga sp. oral taxon 878 species 0 1316596 1 1434 Capnocytophaga sp. oral taxon 864 species 0 1065 1 1316593 0 species Capnocytophaga sp. ChDC OS43 209053 1 785 854 1705617 1 species 0 Capnocytophaga sp. oral taxon 323 807 1204360 1 0 genus Siansivirga zeaxanthinifaciens 0 species 807 762954 1 genus 0 840 417127 1 840 398743 1 0 species Zunongwangia profunda 0 family 2 1333713 599 599 2 267986 1 Owenweeksia genus 0 3 Owenweeksia hongkongensis species 0 1 253245 596 0 phylum 8 142182 2546 class 0 7 Gemmatimonadetes 1 8 219685 2546 2539 7 219686 1 order 0 58 Gemmatimonadales 1 26 0 family Gemmatimonadaceae 2481 6 219687 1293 1706036 2 1 Gemmatirosa 0 genus 6 861299 1 1287 Gemmatirosa kalamazoonesis species 0 1 genus 0 15 Gemmatimonas 1162 3 173479 1 1379270 479 0 species Gemmatimonas phototrophica species 0 Gemmatimonas aurantiaca 668 173480 1 phylum 0 953 74152 6 164 2 641853 0 class 1 order 0 Elusimicrobiales 1 641854 2 164 641876 1 163 0 family 0 genus 1 423604 163 0 species Elusimicrobium minutum 163 1 423605 0 class 3 447830 593 order 0 593 1783344 3 1 0 family 2 Endomicrobiaceae 593 3 1783343 genus 0 2 1408194 591 380 1408281 1 Endomicrobium proavitum species 0 211 1408204 1 species 0 Candidatus Endomicrobium trichonymphae 196 99260 1 no rank 0 167965 1 196 species 0 uncultured Termite group 1 bacterium 233 2323 3 no rank 0 233 3 1783234 clade 0 0 clade 2 95901 146 2497643 2 146 0 class 146 2 2497644 order 0 0 family 2 2497645 146 1 genus 0 3 Candidatus Babela 146 2 1551504 Candidatus Babela massiliensis species 0 673862 1 143 phylum 0 87 1 95818 0 no rank 87 1895827 1 1 2056494 87 species 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 phylum 68297 3 650 203486 3 650 0 class 3 203487 650 Dictyoglomales 0 order 1 1 0 family 203488 2 649 649 13 2 genus 0 383 1 513050 0 species Dictyoglomus turgidum 1 14 266 Dictyoglomus thermophilum 0 species 0 phylum 2352 13 40117 203693 13 2352 Nitrospira class 0 8 1 Nitrospirales 14 0 order 1 12 189778 2344 2330 189779 11 1 0 family 7 Nitrospiraceae genus 0 226 28261 1 226 28262 1 species 0 Thermodesulfovibrio yellowstonii Leptospirillum 3 genus 0 1 179 4 615 0 species group 1 261386 244 1 178606 244 Leptospirillum ferriphilum 0 species species group 0 1 655606 144 Leptospirillum ferrooxidans species 0 1 180 144 species group 0 1 261385 224 224 1 1660083 Leptospirillum sp. Group II 'CF-1' 0 species 1 Nitrospira 9 0 genus 1482 1234 5 574 42253 1 0 species Nitrospira moscoviensis Nitrospira japonica 0 species 1325564 1 264 1 330214 371 0 species Nitrospira defluvii 264 1 1715989 species 0 Candidatus Nitrospira inopinata 0 phylum 11 508458 2845 1 Synergistia class 0 9 2845 11 649775 1 0 order 10 Synergistales 2836 10 649776 649777 9 2826 0 family 13 Synergistaceae 1 0 genus 100 1 336260 0 species Thermovirga lienii 336261 1 100 49894 1 98 0 genus species 0 Acetomicrobium mobile 1 97477 98 2 81461 331 0 genus 2 Thermanaerovibrio 1 Thermanaerovibrio acidaminovorans 0 species 329 81462 1 1 Aminobacterium 2 genus 0 218 2 81466 Aminobacterium colombiense species 0 216 81468 1 2066 508459 2 1 Cloacibacillus 3 genus 0 Cloacibacillus porcorum species 0 1197717 1 2063 18168 22 32066 0 phylum 0 class 13 Fusobacteriia 1 203490 22 18168 18155 203491 21 1 0 order 13 Fusobacteriales 12853 203492 11 1 30 0 family Fusobacteriaceae 167639 1 671 genus 0 671 167642 1 species 0 Ilyobacter polytropus 9 848 12152 0 genus 65 Fusobacterium 1 757 1 850 0 species Fusobacterium mortiferum 1 1583098 1052 Fusobacterium hwasookii 0 species 0 species Fusobacterium nucleatum 1 851 3976 species 0 Fusobacterium necrophorum 859 1 493 2349 1 860 Fusobacterium periodonticum 0 species 856 1 1796 species 0 Fusobacterium varium Fusobacterium gonidiaformans species 0 583 1 849 1 861 1081 species 0 Fusobacterium ulcerans 1129771 9 5289 Leptotrichiaceae 7 family 0 1 1 Leptotrichia 16 0 genus 2890 32067 5 0 species Leptotrichia buccalis 1 40542 893 0 no rank 1981 2633022 3 454 1 1785996 0 species Leptotrichia sp. oral taxon 847 Leptotrichia sp. oral taxon 498 0 species 528 712368 1 712357 1 999 Leptotrichia sp. oral taxon 212 0 species genus 0 1 168808 818 818 1 187101 Sneathia amnii species 0 genus 0 993 32068 1 993 826 1 Sebaldella termitidis species 0 genus 0 1 34104 581 581 34105 1 Streptobacillus moniliformis 0 species 4088202 1663 1783272 clade 0 3433979 1239 701 1 Firmicutes 64 phylum 0 0 no rank 770 33974 2 2 1930845 770 Ndongobacter genus 0 6 1 0 species Ndongobacter massiliensis 764 1 1871025 35373 909932 30 1 0 class 29 Negativicutes 1 11 order 0 Acidaminococcales 11034 1843488 5 909930 4 11023 Acidaminococcaceae 0 family 11 1 Acidaminococcus 0 genus 18 1 3 904 11012 0 species Acidaminococcus intestini 187327 1 6891 1 905 4103 0 species Acidaminococcus fermentans Selenomonadales 47 0 order 1 909929 13 13661 Selenomonadaceae family 0 41 1 8 1843491 11077 0 genus 1607 1 158846 0 species Megamonas hypermegale 1607 158847 1 6 970 9429 Selenomonas 48 genus 0 1 0 no rank 4615 2637378 3 Selenomonas sp. oral taxon 478 species 0 1591 1 712538 species 0 Selenomonas sp. oral taxon 136 1615 1 713030 species 0 Selenomonas sp. oral taxon 920 1 1884263 1409 0 species Selenomonas ruminantium 2705 1 971 Selenomonas sputigena 0 species 69823 1 2061 1 family 0 3 Sporomusaceae 2537 1843490 4 2534 365348 3 1 5 genus 0 Pelosinus no rank 0 1291 2629460 1 Pelosinus sp. UFO1 species 0 484770 1 1291 1238 365349 1 species 0 Pelosinus fermentans 1 Veillonellales 0 order 451 10649 11 1843489 31977 10 10198 family 0 589 Veillonellaceae 1 1 Negativicoccus 0 genus 1 637 909928 2 Negativicoccus massiliensis 0 species 1 1702287 636 29465 3 4009 Veillonella 8 genus 0 1 0 species Veillonella parvula 2894 1 29466 1107 248315 1 Veillonella rodentium 0 species 1 Dialister genus 0 5 720 2 39948 0 species Dialister pneumosintes 715 39950 1 906 2 4243 Megasphaera 102 0 genus 1 1 907 4141 Megasphaera elsdenii species 0 91061 422 319542 Bacilli 165 class 0 1 258 1385 176724 Bacillales 358 0 order 1 4163 9 186823 1 family 0 19 Alicyclobacillaceae 1129704 3 946 79 genus 0 Kyrpidia 1 Kyrpidia tusciae 0 species 33943 1 458 1 2055160 409 species 0 Kyrpidia sp. EA-1 1091 29330 2 1 0 genus 26 Alicyclobacillus Alicyclobacillus acidocaldarius species 0 1065 1 405212 2107 432330 3 1 0 genus 22 Tumebacillus species 0 Tumebacillus avium 1 1903704 1312 773 1 1214604 Tumebacillus algifaecis species 0 1 0 family 49 Planococcaceae 12088 186818 25 3207 5 1569 1 Sporosarcina 0 genus 11 0 species Sporosarcina ureae 1395 1571 1 1476 1 374 Sporosarcina psychrophila species 0 2 2647733 1427 0 no rank 0 species Sporosarcina sp. P37 1 1930546 653 Sporosarcina sp. P33 0 species 1930764 1 774 1 Jeotgalibacillus genus 0 1 788 157226 2 1 1508404 787 species 0 Jeotgalibacillus malaysiensis Planococcus 0 genus 105 1 12 1372 5275 species 0 Planococcus rifietoensis 556 200991 1 0 species Planococcus plakortidis 410 1038856 1 Planococcus maritimus 0 species 192421 1 1039 Planococcus kocurii 0 species 1374 1 431 species 0 Planococcus faecalis 487 1 1598147 1 1302659 353 Planococcus sp. L10.15 0 species no rank 0 2 2662419 740 1 1526927 289 species 0 Planococcus sp. PAMC 21323 species 0 Planococcus sp. MB-3u-03 1 2058136 451 0 species Planococcus donghaensis 369 1 414778 527 1 161360 Planococcus antarcticus species 0 258 1215089 1 species 0 Planococcus halocryophilus 0 genus 1 1649 746 2644826 1 746 no rank 0 746 1 1750719 species 0 Kurthia sp. 11kri321 genus 0 397 1 648802 species 0 Rummeliibacillus stabekisii 397 1 241244 1 6 0 genus Solibacillus 1626 3 648800 960 76853 1 Solibacillus silvestris 0 species 660 1 2637870 0 no rank 660 2048654 1 Solibacillus sp. R5-41 species 0 46565 46 186822 1 0 family 87 Paenibacillaceae 2 0 genus Thermobacillus 1 76632 2 1377 377615 1 1375 Thermobacillus composti 0 species 1 Brevibacillus genus 0 54 2778 55080 4 1 1465 1212 Brevibacillus laterosporus species 0 1 1393 930 Brevibacillus brevis species 0 54913 1 582 Brevibacillus formosus 0 species 0 no rank 1492 85151 3 55079 3 1492 3 genus 0 Aneurinibacillus 1 792 1500254 1 0 species Aneurinibacillus soli 0 no rank 2642329 1 697 697 1 1450761 species 0 Aneurinibacillus sp. XH2 44249 36 40831 0 genus 340 Paenibacillus 1 Paenibacillus larvae 0 species 719 1 1464 Paenibacillus donghaensis 0 species 1602 414771 1 no rank 0 14408 185978 13 0 species Paenibacillus sp. FSL R7-0273 1 1536772 1734 1695218 1 962 Paenibacillus sp. 32O-W species 0 1437 1 1536774 0 species Paenibacillus sp. FSL H7-0357 823 1870819 1 0 species Paenibacillus sp. BIHB4019 1536775 1 917 0 species Paenibacillus sp. FSL H7-0737 668 1 2069255 Paenibacillus sp. lzh-N1 0 species 1536771 1 1577 species 0 Paenibacillus sp. FSL R5-0912 432 1 1566358 Paenibacillus sp. IHBB 10380 species 0 0 species Paenibacillus sp. JDR-2 324057 1 1134 Paenibacillus sp. FSL R7-0331 0 species 1264 1 1536773 Paenibacillus sp. FSL R5-0345 species 0 1536770 1 694 1012 481743 1 species 0 Paenibacillus sp. Y412MC10 species 0 Paenibacillus sp. FSL P4-0081 1754 1536769 1 1 1462996 977 Paenibacillus yonginensis species 0 Paenibacillus graminis 0 species 1358 189425 1 Paenibacillus crassostreae 0 species 1763538 1 530 959 1 365617 Paenibacillus sabinae species 0 1 189426 840 Paenibacillus odorifer species 0 1436 1 2044880 0 species group 0 species Paenibacillus riograndensis 1436 1 483937 1 528191 882 species 0 Paenibacillus xylanexedens 786 172713 1 species 0 Paenibacillus kribbensis 1616788 1 1199 Paenibacillus bovis species 0 1 1126833 905 Paenibacillus beijingensis species 0 1146 1870820 1 Paenibacillus ihbetae species 0 2162 1 61624 0 species Paenibacillus mucilaginosus Paenibacillus peoriae species 0 674 59893 1 2547 1 1406 species 0 Paenibacillus polymyxa species 0 Paenibacillus naphthalenovorans 885 1 162209 1383 1 169760 species 0 Paenibacillus stellifer 0 species Paenibacillus borealis 1593 1 160799 44251 1 1995 Paenibacillus durus species 0 species 0 Paenibacillus swuensis 1 1178515 529 species 0 Paenibacillus terrae 976 1 159743 8 539002 2900 0 no rank no rank 0 2249 7 539742 1 genus 0 42 Exiguobacterium 2249 7 33986 325 1 132920 Exiguobacterium antarcticum 0 species 1521 2644629 4 no rank 0 406 1 1849031 species 0 Exiguobacterium sp. U13-1 1399115 1 289 0 species Exiguobacterium sp. MH3 species 0 Exiguobacterium sp. ZWU0009 371 1224749 1 species 0 Exiguobacterium sp. AT1b 455 1 360911 species 0 Exiguobacterium sibiricum 1 332410 361 651 1 539738 0 no rank 651 1 1378 0 genus 1 2624949 651 no rank 0 1 1785995 651 Gemella sp. oral taxon 928 species 0 Thermoactinomycetaceae 2 0 family 1 186824 4 1045 Novibacillus genus 0 18 1 1677050 2 968 Novibacillus thermophilus 0 species 1 1471761 950 Laceyella genus 0 292635 1 75 80219 115 186817 1 Bacillaceae 0 family 111 2 459532 554 Terribacillus genus 0 2 1 586416 1 552 Terribacillus aidingensis 0 species Lysinibacillus 52 0 genus 1 5 400634 3734 1 28031 618 species 0 Lysinibacillus fusiformis 725 1145276 1 0 species Lysinibacillus varians 614 2636778 1 0 no rank species 0 Lysinibacillus sp. YS11 1 2072025 614 species 0 Lysinibacillus sphaericus 1725 1 1421 1906945 2 554 11 0 genus Parageobacillus 1 543 1426 1 species 0 Parageobacillus thermoglucosidasius 1 1055323 552 0 genus 33936 1 552 Aeribacillus pallidus species 0 2 2675230 1385 0 genus 859 665099 1 Bacillus oceanisediminis species 0 526 1 859143 Bacillus kochii 0 species 5 2675234 3038 0 genus 659 1 79885 species 0 Bacillus pseudofirmus 776 79880 1 Bacillus clausii species 0 Bacillus halodurans 0 species 86665 1 372 543 1 199441 0 species Bacillus krulwichiae 300825 1 688 0 species Bacillus lehensis 1164 1 182709 genus 0 182710 1 1164 Oceanobacillus iheyensis 0 species genus 0 45667 2 1242 1 402384 612 species 0 Halobacillus mangrovi Halobacillus halophilus 0 species 630 1570 1 2267 0 genus Bacillus 1 58 1386 51812 no rank 0 185979 19 6695 66 2049935 1 Bacillus sp. Lzh-5 species 0 Bacillus sp. H15-1 species 0 532 1 1856406 1 1127744 176 species 0 Bacillus sp. JS Bacillus sp. MD-5 0 species 2009331 1 199 Bacillus sp. FJAT-14266 species 0 520 1 1837130 Bacillus sp. Pc3 0 species 263 1 1446792 0 species Bacillus sp. OxB-1 1 98228 559 1 1774743 440 Bacillus sp. SDLI1 species 0 618 1 666686 species 0 Bacillus sp. 1NLA3E 0 species Bacillus sp. X1(2014) 1565991 1 665 species 0 Bacillus sp. BH072 1 1570330 104 species 0 Bacillus sp. (in: Bacteria) 1 1409 104 species 0 Bacillus sp. 1s-1 1 2026248 533 756828 1 530 Bacillus sp. WP8 species 0 1 1574141 191 0 species Bacillus sp. YP1 Bacillus sp. SJ-10 species 0 271 1 563169 594 1827146 1 Bacillus sp. IHB B 7164 species 0 species 0 Bacillus sp. 275 1941347 1 231 99 1628753 1 species 0 Bacillus sp. LM 4-2 1792192 1 545 0 species group 0 species Bacillus altitudinis 1 293387 545 135735 1 816 species 0 Bacillus endophyticus 1 1408 2327 Bacillus pumilus 0 species 1413 1 472 Bacillus cellulosilyticus 0 species Bacillus smithii species 0 1479 1 463 589 412384 1 Bacillus aryabhattai 0 species Bacillus coagulans 0 species 1723 1398 1 632773 1 566 Bacillus beveridgei species 0 9 653685 9570 species group 0 0 species subgroup 2828 1938374 3 Bacillus velezensis 0 species 989 492670 1 Bacillus amyloliquefaciens 0 species 1390 1 1411 428 659243 1 0 species Bacillus siamensis species 0 Bacillus subtilis 1423 1 3484 818 1 1402 Bacillus licheniformis 0 species 1 72361 125 Bacillus vallismortis 0 species 720 1648923 1 Bacillus paralicheniformis species 0 0 species Bacillus atrophaeus 912 1 1452 Bacillus sonorensis 0 species 683 1 119858 Bacillus methanolicus 0 species 1 1471 589 Bacillus glycinifermentans species 0 816 1664069 1 1404 1 1510 Bacillus megaterium species 0 553 1 1547283 species 0 Bacillus weihaiensis 0 species Bacillus infantis 324767 1 842 0 species group 17932 10 86661 2750818 3 1942 no rank 0 1 1892404 572 species 0 Bacillus sp. ABP14 1 2053832 538 species 0 Bacillus sp. HBCD-sjtu Bacillus sp. FDAARGOS_235 species 0 832 1 1839798 Bacillus bombysepticus species 0 1 658666 470 Bacillus cereus 0 species 1 1396 5885 species 0 Bacillus thuringiensis 1428 1 5365 577 1 155322 Bacillus toyonensis 0 species species 0 Bacillus anthracis 505 1392 1 Bacillus cytotoxicus species 0 580165 1 622 Bacillus mycoides 0 species 2566 1405 1 0 species Bacillus xiamenensis 533 1 1178537 Bacillus safensis species 0 1124 561879 1 Bacillus cohnii 0 species 718 1 33932 561 1 79883 Bacillus horikoshii species 0 species 0 Bacillus gibsonii 79881 1 68 533 1 86664 Bacillus flexus 0 species Geobacillus 254 0 genus 1 15 129337 5342 0 no rank 1716 2642459 6 1 544556 174 Geobacillus sp. Y412MC61 0 species 0 species Geobacillus sp. GHH01 218 1233873 1 235 1 550542 Geobacillus sp. Y412MC52 species 0 519 581103 1 Geobacillus sp. Y4.1MC1 species 0 species 0 Geobacillus sp. C56-T3 214 1 691437 Geobacillus sp. WCH70 0 species 356 471223 1 1 129338 329 Geobacillus subterraneus 0 species 1 1422 559 Geobacillus stearothermophilus species 0 species group 0 4 1505648 1623 317 1 33938 species 0 Geobacillus thermocatenulatus Geobacillus lituanicus species 0 1 169283 470 200 1462 1 0 species Geobacillus kaustophilus 636 33941 1 Geobacillus thermoleovorans species 0 Geobacillus genomosp. 3 species 0 364 1 1921421 497 1 33940 species 0 Geobacillus thermodenitrificans 0 genus 6 Anoxybacillus 1 150247 6 2474 1 198467 394 species 0 Anoxybacillus gonensis 774 2 2639704 no rank 0 452 1490052 1 0 species Anoxybacillus sp. B2M1 322 1490057 1 species 0 Anoxybacillus sp. B7M1 Anoxybacillus amylolyticus species 0 415 294699 1 Anoxybacillus flavithermus 0 species 1 33934 885 3 0 genus Fictibacillus 1 3 1329200 1322 0 species Fictibacillus phosphorivorans 1 1221500 618 Fictibacillus arsenicus 0 species 701 255247 1 7 84406 3459 0 genus 12 Virgibacillus 1 Virgibacillus halodenitrificans species 0 559 1482 1 no rank 0 2620237 2 1196 species 0 Virgibacillus sp. 6R 1911587 1 670 Virgibacillus sp. SK37 0 species 526 1 403957 Virgibacillus pantothenticus species 0 464 1 1473 621 163877 1 0 species Virgibacillus necropolis 607 2017483 1 Virgibacillus phasianinus species 0 1 351195 475 0 genus species 0 Salimicrobium jeotgali 1 1230341 475 809 1 29331 genus 0 809 1 1449 Amphibacillus xylanus 0 species 0 genus 175304 1 475 0 species Lentibacillus amyloliquefaciens 1 1472767 475 genus 0 1717 2 2675229 0 species Bacillus simplex 1478 1 1206 Bacillus muralis species 0 511 264697 1 Listeriaceae 4 0 family 1 186820 9 5719 1637 6 5202 Listeria genus 0 42 1 Listeria innocua species 0 537 1 1642 1643 1 870 0 species Listeria welshimeri species 0 Listeria seeligeri 656 1640 1 1020 1 1638 Listeria ivanovii 0 species 1639 1 2077 species 0 Listeria monocytogenes 2755 2 513 4 genus 0 Brochothrix 1 1 2756 509 Brochothrix thermosphacta species 0 1 186821 728 family 0 0 no rank 728 1 663587 1 85683 728 0 species [Bacillus] selenitireducens 40 90964 22939 966 family 0 Staphylococcaceae 1 genus 0 354 1 2005363 Auricoccus indicus 0 species 1849491 1 354 586 45669 1 0 genus 0 species Salinicoccus halodurans 586 407035 1 4 69965 1680 4 genus 0 Macrococcus 1 0 no rank 1 2619255 480 1898474 1 480 Macrococcus sp. IME1552 species 0 751 1 69966 species 0 Macrococcus caseolyticus 1855823 1 445 species 0 Macrococcus canis 33 1279 19353 327 0 genus Staphylococcus 1 0 species Staphylococcus haemolyticus 1283 1 542 species 0 Staphylococcus pettenkoferi 1 170573 316 526 1281 1 Staphylococcus carnosus 0 species 0 species Staphylococcus kloosii 29384 1 465 0 species Staphylococcus sciuri 1296 1 589 1 70258 490 species 0 Staphylococcus piscifermentans 1286 1 428 0 species Staphylococcus simulans 485 1 246432 Staphylococcus equorum 0 species 214473 1 546 Staphylococcus nepalensis species 0 Staphylococcus xylosus 0 species 1288 1 734 0 species Staphylococcus succinus 1 61015 616 species 0 Staphylococcus aureus 2252 1 1280 Staphylococcus condimenti 0 species 1 70255 592 species 0 Staphylococcus saprophyticus 698 1 29385 1295 1 411 0 species Staphylococcus schleiferi Staphylococcus cohnii species 0 534 1 29382 Staphylococcus capitis 0 species 1 29388 334 1 155085 417 species 0 Staphylococcus lutrae species 0 Staphylococcus simiae 742 1 308354 0 species Staphylococcus agnetis 343 985762 1 Staphylococcus lugdunensis species 0 1 28035 478 1 643214 395 Staphylococcus stepanovicii 0 species 814 1 1282 0 species Staphylococcus epidermidis no rank 0 492 91994 1 1 1715860 492 Staphylococcus sp. AntiMn-1 0 species species 0 Staphylococcus pseudintermedius 1 283734 583 species 0 Staphylococcus pasteuri 1202 1 45972 Staphylococcus warneri 0 species 600 1 1292 1284 1 358 0 species Staphylococcus hyicus Staphylococcus muscae 0 species 1294 1 226 671 985002 1 species 0 Staphylococcus argenteus 1290 1 585 Staphylococcus hominis 0 species 562 1 46127 Staphylococcus felis species 0 Lactobacillales order 0 1224 1 163 186826 142653 1 Enterococcaceae family 0 42 21048 81852 18 0 genus 1130 1 51668 1 51669 1130 Tetragenococcus halophilus 0 species 18125 12 1350 1 genus 0 1025 Enterococcus 1 1351 2556 Enterococcus faecalis 0 species 332 1 37734 0 species Enterococcus casseliflavus 53345 1 1100 Enterococcus durans 0 species species 0 Enterococcus thailandicus 1 417368 738 Enterococcus wangshanyuanii species 0 1 2005703 878 species 0 Enterococcus faecium 8069 1352 1 0 no rank 1661 3 2608891 2057791 1 504 Enterococcus sp. CR-Ec1 0 species 556 1 2060306 Enterococcus sp. FDAARGOS_163 0 species 0 species Enterococcus sp. FDAARGOS_375 601 2060307 1 53346 1 916 Enterococcus mundtii species 0 Enterococcus hirae species 0 850 1 1354 genus 0 33969 1 570 Melissococcus plutonius 0 species 1 33970 570 1181 3 2737 1 Vagococcus genus 0 1 446 1 633807 Vagococcus penaei species 0 species 0 Vagococcus teuberi 734 1 519472 family 0 1770 Streptococcaceae 1 1300 49 78303 1 1779 genus 0 Streptococcus 72399 1301 43 species 0 Streptococcus himalayensis 272 1 1888195 0 species group 119603 2 1499 972 1 1336 0 species Streptococcus equi 527 1 1334 Streptococcus dysgalactiae 0 species 45634 1 391 Streptococcus cristatus 0 species species 0 Streptococcus gordonii 1397 1302 1 532 1 1348 Streptococcus parauberis 0 species 400065 1 362 Streptococcus merionis species 0 1685 102684 1 0 species Streptococcus infantarius 1346 1 917 species 0 Streptococcus iniae Streptococcus agalactiae species 0 5675 1 1311 Streptococcus mutans 0 species 1 1309 607 species 0 Streptococcus pasteurianus 1 197614 5923 0 species Streptococcus pantholopis 1811193 1 487 0 species Streptococcus halotolerans 1 1814128 413 1647 150055 1 0 species Streptococcus lutetiensis 671232 3 17242 species group 0 76860 1 4962 0 species Streptococcus constellatus Streptococcus intermedius 0 species 1 1338 819 11461 1 1328 species 0 Streptococcus anginosus 1 1318 736 Streptococcus parasanguinis species 0 1314 1 1014 Streptococcus pyogenes 0 species species 0 Streptococcus macedonicus 1 59310 526 species 0 Streptococcus suis 1 1307 10724 1165 1303 1 Streptococcus oralis species 0 species 0 Streptococcus pseudopneumoniae 663 1 257758 440 1 1825069 species 0 Streptococcus marmotae 1 315405 1736 Streptococcus gallolyticus species 0 species 0 Streptococcus acidominimus 1 1326 1040 1 82348 482 Streptococcus pluranimalium species 0 3248 2608887 7 0 no rank 1902136 1 395 Streptococcus sp. NPS 308 0 species 1 1156431 412 Streptococcus sp. I-G2 species 0 0 species Streptococcus sp. A12 1 1759399 345 1 1156433 396 Streptococcus sp. I-P16 0 species 1839799 1 842 species 0 Streptococcus sp. FDAARGOS_192 Streptococcus sp. oral taxon 431 species 0 373 712633 1 485 1 1319 Streptococcus sp. 'group B' 0 species Streptococcus mitis species 0 1338 28037 1 Streptococcus sanguinis species 0 733 1 1305 species 0 Streptococcus salivarius 1304 1 3936 Streptococcus thermophilus species 0 1308 1 1154 1 1313 1476 species 0 Streptococcus pneumoniae 1 1335 588 species 0 Streptococcus equinus 1349 1 572 Streptococcus uberis species 0 1357 5 4134 8 0 genus Lactococcus 1 1364 1 401 Lactococcus piscium species 0 Lactococcus garvieae species 0 1363 1 840 1358 1 2550 0 species Lactococcus lactis Lactococcus raffinolactis 0 species 335 1 1366 1 0 family 3 Aerococcaceae 2813 8 186827 Aerococcus 0 genus 162 1 1375 7 2810 Aerococcus urinaeequi 0 species 522 1 51665 546 1 87541 Aerococcus christensenii species 0 1 119206 488 Aerococcus sanguinicola species 0 506 1 1376 0 species Aerococcus urinae Aerococcus viridans species 0 315 1377 1 Aerococcus urinaehominis species 0 271 128944 1 0 no rank 497 263855 1 497 1 1993866 0 species Lactobacillales bacterium 30051 58 33958 1 family 0 108 Lactobacillaceae 1 Lactobacillus 734 0 genus 10271 16 1578 4 2620435 1010 no rank 0 178 1 2108362 0 species Lactobacillus sp. D1501 249 1545702 1 0 species Lactobacillus sp. wkB8 1 2099788 261 species 0 Lactobacillus sp. CBA3605 Lactobacillus sp. CBA3606 species 0 322 2099789 1 1 1600 340 Lactobacillus acetotolerans 0 species 0 species Lactobacillus gasseri 954 1596 1 1 33959 905 Lactobacillus johnsonii 0 species 267818 1 312 species 0 Lactobacillus kefiranofaciens Lactobacillus gallinarum 0 species 1 52242 442 1489 1584 1 Lactobacillus delbrueckii species 0 Lactobacillus acidophilus species 0 1579 1 494 373 1 109790 Lactobacillus jensenii species 0 1 1587 668 Lactobacillus helveticus 0 species Lactobacillus amylovorus species 0 1604 1 2238 312 1 83683 0 species Lactobacillus amylolyticus genus 0 4 2767887 3493 1 1601 440 0 species Lactobacillus agilis 0 species Lactobacillus acidipiscis 494 89059 1 1624 1 1422 species 0 Lactobacillus salivarius Lactobacillus ruminis 0 species 1137 1623 1 2759736 3 2124 0 genus Lactobacillus casei species 0 1582 1 864 625 47715 1 Lactobacillus rhamnosus species 0 0 species Lactobacillus paracasei 635 1597 1 2767893 3 920 0 genus Lactobacillus parabuchneri 0 species 1 152331 210 0 species Lactobacillus buchneri 1 1581 413 species 0 Lactobacillus curieae 1138822 1 297 genus 0 2559 2767879 6 1612 1 460 species 0 Lactobacillus farciminis 1 392416 377 Lactobacillus crustorum species 0 0 species Lactobacillus alimentarius 386 1602 1 Lactobacillus ginsenosidimutans 0 species 422 1007676 1 448 1 1847728 Lactobacillus allii species 0 1074467 1 466 0 species Lactobacillus heilongjiangensis genus 0 2 2767881 518 species 0 Lactobacillus lindneri 53444 1 302 Lactobacillus sanfranciscensis species 0 1 1625 216 genus 0 1 2767876 949 1 1603 949 Lactobacillus amylophilus species 0 0 genus 410 1 2767892 1 240427 410 0 species Lactobacillus paracollinoides 0 genus 1 2767877 214 214 148814 1 Lactobacillus kunkeei 0 species 3 2742598 1985 0 genus Lactobacillus fermentum species 0 501 1 1613 0 species Lactobacillus reuteri 912 1598 1 species 0 Lactobacillus mucosae 572 97478 1 genus 0 3 2767842 1446 Lactobacillus plantarum 0 species 1590 1 660 279 60520 1 Lactobacillus paraplantarum species 0 507 1 1589 Lactobacillus pentosus 0 species 0 genus 2767886 3 933 464 1 1580 Lactobacillus brevis 0 species 0 species Lactobacillus zymae 262 1 267363 207 1 637971 Lactobacillus koreensis 0 species 0 genus 776 2767889 2 307 375175 1 0 species Lactobacillus backii 0 species Lactobacillus coryniformis 469 1 1610 2767885 2 1274 genus 0 species 0 Lactobacillus sakei 1599 1 763 511 28038 1 0 species Lactobacillus curvatus Pediococcus 9 genus 0 1 6 1253 1854 Pediococcus pentosaceus 0 species 465 1255 1 236 114090 1 0 species Pediococcus inopinatus 0 species Pediococcus damnosus 480 51663 1 1670797 1 328 0 species group Pediococcus acidilactici species 0 1 1254 328 187452 1 336 Pediococcus claussenii 0 species 0 genus 2767890 1 217 Lactobacillus hokkaidonensis species 0 1 1193095 217 81850 17 4365 family 0 3 Leuconostocaceae 1 203 46254 1 genus 0 species 0 Oenococcus oeni 1247 1 203 1 Weissella 0 genus 3 1703 46255 6 322 1 1631871 Weissella jogaejeotgali species 0 414 137591 1 species 0 Weissella cibaria 0 species Weissella ceti 759620 1 283 Weissella paramesenteroides 0 species 1 1249 378 0 species Weissella koreensis 303 165096 1 2456 9 1243 1 Leuconostoc 0 genus 5 Leuconostoc gelidum 0 species 1244 1 436 1252 1 293 Leuconostoc carnosum species 0 Leuconostoc garlicum species 0 1 255248 133 species 0 Leuconostoc citreum 1 33964 344 Leuconostoc kimchii species 0 136609 1 230 635 1245 1 0 species Leuconostoc mesenteroides no rank 0 2685106 1 205 1 979982 205 Leuconostoc sp. C2 species 0 1 1246 175 Leuconostoc lactis species 0 11 186828 4352 7 family 0 Carnobacteriaceae 1 1027 1470540 3 1 3 genus 0 Jeotgalibaca no rank 0 1 2621505 588 1903686 1 588 Jeotgalibaca sp. PTS2502 species 0 1 708126 436 0 species Jeotgalibaca dankookensis 1 Marinilactibacillus genus 0 3 751 191769 2 0 no rank 748 2632303 1 1 1911586 748 Marinilactibacillus sp. 15R species 0 2747 5 2567 Carnobacterium genus 0 3 1 0 no rank 257487 2 1052 species 0 Carnobacterium sp. CP1 1564681 1 478 Carnobacterium sp. 17-4 0 species 574 1 208596 species 0 Carnobacterium inhibens 677 1 147709 835 2751 1 Carnobacterium maltaromaticum 0 species 0 no rank 581 1 84086 0 species endosymbiont 'TC1' of Trimyema compressum 1 243899 581 Erysipelotrichia 0 class 1 1 11 526524 14797 0 order 16 Erysipelotrichales 1 10 526525 14796 Erysipelotrichaceae 77 family 0 1 9 128827 14780 Faecalibaculum genus 0 10 1 2 1729679 2433 2423 1702221 1 Faecalibaculum rodentium species 0 126 0 genus Erysipelothrix 1 3 1647 2578 981 1 1514105 0 species Erysipelothrix larvae species 0 Erysipelothrix rhusiopathiae 1471 1 1648 0 no rank 6535 544447 1 1834207 1 6535 Erysipelotrichaceae bacterium I46 0 species 6 0 genus Turicibacter 1 191303 2 3157 no rank 0 3151 2638206 1 1712675 1 3151 0 species Turicibacter sp. H121 11037 18 1737404 class 0 2 1737407 534 0 no rank Ezakiella 19 0 genus 1 2 1582879 534 0 species Ezakiella massiliensis 1852374 1 515 10503 16 1737405 1 Tissierellales 45 0 order 1 0 family 2676 Peptoniphilaceae 9705 1570339 12 719 2 162289 1 Peptoniphilus 0 genus 5 714 2637196 1 0 no rank Peptoniphilus sp. ING2-D1G species 0 1912856 1 714 1 Finegoldia 2 0 genus 1290 2 150022 Finegoldia magna species 0 1288 1260 1 3 165779 904 Anaerococcus 0 genus 3 1 481 33034 1 Anaerococcus prevotii species 0 Anaerococcus mediterraneensis 0 species 1 1870984 420 3306 2 1161127 1 4 0 genus Murdochiella 3302 1852373 1 0 species Murdochiella vaginalis 810 2 543311 1 5 0 genus Parvimonas 1 33033 805 Parvimonas micra species 0 753 3 2042895 1 2 family 0 Gottschalkiaceae 751 1505664 2 1 5 0 genus Gottschalkia 1 1556 746 species 0 Gottschalkia acidurici 3051051 211 186801 1 193 class 0 Clostridia 68295 35 14555 Thermoanaerobacterales order 0 15 1 Thermoanaerobacteraceae 27 0 family 1 186814 18 7344 0 genus 311 129957 1 129958 1 311 Carboxydothermus hydrogenoformans species 0 0 no rank 1120 42857 3 1 42837 409 0 genus 0 species Ammonifex degensii 1 42838 409 1 Moorella genus 0 2 711 44260 2 0 species Moorella thermoacetica 709 1525 1 1 Thermacetogenium 6 genus 0 486 140458 2 480 85874 1 0 species Thermacetogenium phaeum 530 2 249529 1 Caldanaerobacter 6 genus 0 species 0 Caldanaerobacter subterraneus 1 911092 524 Thermoanaerobacter 95 0 genus 1 9 1754 4870 1 29323 659 Thermoanaerobacter brockii 0 species 0 species Thermoanaerobacter mathranii 603 583357 1 Thermoanaerobacter kivui species 0 1 2325 530 species 0 Thermoanaerobacter wiegelii 584 46354 1 659 1 496866 0 species Thermoanaerobacter pseudethanolicus 108150 1 654 Thermoanaerobacter italicus 0 species 1086 2 2636821 0 no rank 0 species Thermoanaerobacter sp. X513 1 573062 562 524 1 399726 0 species Thermoanaerobacter sp. X514 family 0 227387 1 177 0 genus 177 227388 1 177 1 184064 species 0 Thermodesulfobium narugense Thermoanaerobacterales Family III. Incertae Sedis 16 family 0 1 543371 13 6140 4151 9 44000 1 Caldicellulosiruptor 0 genus 64 574 1 413889 Caldicellulosiruptor kronotskyensis 0 species Caldicellulosiruptor kristjanssonii species 0 503 52765 1 species 0 Caldicellulosiruptor bescii 31899 1 473 1 717609 511 Caldicellulosiruptor obsidiansis 0 species 1 55205 457 Caldicellulosiruptor owensensis 0 species 44001 1 550 species 0 Caldicellulosiruptor saccharolyticus 582 1 52766 species 0 Caldicellulosiruptor lactoaceticus 413888 1 437 Caldicellulosiruptor hydrothermalis species 0 7 0 genus Thermoanaerobacterium 1 28895 3 1973 1517 1 1229 Thermoanaerobacterium thermosaccharolyticum 0 species 737 29329 1 Thermoanaerobacterium xylanolyticum species 0 2 543372 879 family 0 3 Thermoanaerobacterales Family IV. Incertae Sedis 1 0 genus 876 252965 1 species 0 Mahella australiensis 252966 1 876 359 485256 4 1 Natranaerobiales 3 order 0 3 485255 356 Natranaerobiaceae 0 family 1 1 375928 2 355 Natranaerobius genus 0 8 1 347 1 375929 species 0 Natranaerobius thermophilus order 0 1163 2770089 4 2 2770093 446 0 family 291988 2 446 Thermosediminibacter 5 genus 0 1 441 291990 1 Thermosediminibacter oceani 0 species 2770092 2 717 0 family 1 0 genus 1 Tepidanaerobacter 717 2 499228 1 499229 716 species 0 Tepidanaerobacter acetatoxydans 186802 159 3032192 0 order 7167 Clostridiales 1 11778 3 990719 1 Christensenellaceae 6 0 family 1 Christensenella 151 genus 0 11772 990721 2 11621 1805714 1 species 0 Christensenella massiliensis 12 2304686 24834 0 family 261 genus 0 Ruminiclostridium 1 2 1508657 2368 [Clostridium] cellulolyticum species 0 2107 1 1521 2 236752 539 Fastidiosipila 10 0 genus 1 0 species Fastidiosipila sanguinis 529 236753 1 genus 0 1547 2304693 1 1547 1 84032 [Clostridium] thermosuccinogenes species 0 2 0 genus Mageeibacillus 1 2 1637257 2117 0 species Mageeibacillus indolicus 2115 884684 1 1 2305130 13278 no rank 0 species 0 Ruminiclostridium sp. KB18 13278 1834198 1 3631 2304692 3 0 genus species 0 Ruminiclostridium thermocellum 1 1515 1264 1388 1 288965 0 species [Clostridium] clariflavum 1677857 1 979 0 species Herbivorax saccincola 1354 2304691 1 0 genus species 0 [Clostridium] stercorarium 1 1510 1354 214 family 0 Ruminococcaceae 1 541000 13 1439517 0 genus Herbivorax 1 1890281 1 no rank 0 2305133 1 3943 Ruminococcaceae bacterium CPB6 species 0 3943 1572656 1 1345635 2 216851 1 Faecalibacterium 270 0 genus 1 853 1345365 Faecalibacterium prausnitzii species 0 0 no rank 1471 552397 1 [Clostridium] cellulosi species 0 1471 29343 1 5479 253238 2 1 9 0 genus Ethanoligenens Ethanoligenens harbinense 0 species 1 253239 5470 Flavonifractor genus 0 42 1 946234 2 60832 species 0 Flavonifractor plautii 60790 292800 1 Ruminococcus 0 genus 86 1 3 1263 21942 Ruminococcus albus 0 species 3730 1 1264 1160721 1 18126 Ruminococcus bicirculans 0 species 1 5 0 family Eubacteriaceae 12428 5 186806 1038 33951 2 1 0 genus 2 Acetobacterium 1036 33952 1 species 0 Acetobacterium woodii 2 1730 11385 Eubacterium genus 0 191 1 Eubacterium limosum species 0 11194 1736 1 68298 2 659 family 0 1 129001 269 0 genus 269 86170 1 Syntrophothermus lipocalidus species 0 390 1 862 genus 0 863 1 390 Syntrophomonas wolfei 0 species Oscillospiraceae 2 family 0 1 216572 3 18145 0 genus 27 Oscillibacter 1 2 459786 18143 18116 351091 1 0 species Oscillibacter valericigenes family 0 73 Peptococcaceae 1 186807 27 18700 2282742 1 545 0 genus Desulfotomaculum acetoxidans 0 species 545 1 58138 5 36853 4140 30 genus 0 Desulfitobacterium 1 1 36854 934 Desulfitobacterium dehalogenans species 0 0 species Desulfitobacterium dichloroeliminans 233055 1 637 142877 1 735 species 0 Desulfitobacterium metallireducens Desulfitobacterium hafniense species 0 49338 1 1804 2 51514 1922 Dehalobacterium 0 genus 1 1 species 0 Dehalobacterium formicoaceticum 1921 51515 1 471826 1 635 0 genus 1 471827 635 0 species Candidatus Desulforudis audaxviator 4 56112 3357 35 genus 0 Dehalobacter 1 Dehalobacter restrictus species 0 1064 55583 1 2258 2 2635733 no rank 0 Dehalobacter sp. DCA species 0 1111 1147129 1 0 species Dehalobacter sp. CF 1 1131462 1147 2798 1562 5 1 Desulfotomaculum 0 genus 13 655 1833852 1 Desulfotomaculum ferrireducens species 0 1 59610 556 0 species Desulfotomaculum reducens 1063 1564 1 species 0 Desulfotomaculum ruminis 1565 1 511 Desulfotomaculum nigrificans 0 species 2 51196 1165 Syntrophobotulus 5 genus 0 1 Syntrophobotulus glycolicus 0 species 1160 51197 1 865 1 2282740 0 genus Desulfotomaculum gibsoniae species 0 865 102134 1 1 Desulfosporosinus 51 0 genus 2515 79206 4 Desulfosporosinus orientis species 0 812 1 1563 885581 1 865 Desulfosporosinus acidiphilus 0 species Desulfosporosinus meridiei species 0 1 79209 787 685 278993 1 0 genus 685 1 863643 Thermincola potens species 0 1 Heliobacteriaceae 0 family 13 1623 31984 3 2697 2 1610 0 genus 25 Heliobacterium 1 species 0 Heliobacterium modesticaldum 1 35701 1585 1 Lachnospiraceae 0 family 725 1246688 186803 26 0 genus 3109 698776 1 3109 1 29360 Cellulosilyticum lentocellum species 0 3974 1663717 2 1 genus 0 3 Herbinix 0 species Herbinix luporum 1 1679721 3971 no rank 0 186928 2 174570 162817 1 39491 species 0 [Eubacterium] rectale Lachnospiraceae bacterium oral taxon 500 species 0 11753 712991 1 0 genus 71210 2719313 1 0 species [Clostridium] bolteae 71210 208479 1 Roseburia 0 genus 37 1 2 841 225831 0 species Roseburia hominis 1 301301 225794 4 1506553 63276 genus 0 160 Lachnoclostridium 1 0 no rank 26900 1 2608895 1834196 1 26900 species 0 Lachnoclostridium sp. YL32 0 species Lachnoclostridium phytofermentans 6513 66219 1 species 0 Lachnoclostridium phocaeense 29703 1871021 1 genus 0 106522 2569097 1 0 species [Eubacterium] hallii 39488 1 106522 genus 0 28050 1 269245 species 0 [Eubacterium] eligens 1 39485 269245 1 Butyrivibrio genus 0 35 16264 3 830 8160 1 185008 Butyrivibrio hungatei 0 species 0 species Butyrivibrio proteoclasticus 8069 43305 1 1 5 genus 0 Anaerotignum 5631 2039240 2 1 28446 5626 Anaerotignum propionicum species 0 58 0 genus Blautia 1 3 572511 77711 28369 1 2648079 0 no rank 28369 1796616 1 0 species Blautia sp. YL58 1322 1 49284 Blautia hansenii 0 species 19839 1 2719231 genus 0 species 0 [Clostridium] saccharolyticum 1 84030 19839 Anaerostipes 0 genus 201 1 207244 2 208781 1 649756 208580 0 species Anaerostipes hadrus 88711 41 31979 1 215 0 family Clostridiaceae 0 genus Mordavella 1981033 1 113 1 Geosporobacter 0 genus 7 1804 390805 2 Geosporobacter ferrireducens 0 species 1424294 1 1797 1822 3 114627 1 1 genus 0 Alkaliphilus 1033 208226 1 Alkaliphilus metalliredigens species 0 Alkaliphilus oremlandii 0 species 788 1 461876 Candidatus Arthromitus 0 genus 3 1 4 49082 1941 0 no rank 2638829 3 1938 Candidatus Arthromitus sp. SFB-mouse-NL species 0 642 1508644 1 Candidatus Arthromitus sp. SFB-rat-Yit 0 species 698 1041504 1 49118 1 598 Candidatus Arthromitus sp. SFB-mouse 0 species 82816 1485 30 1 312 0 genus Clostridium 0 species Clostridium saccharobutylicum 2385 1 169679 species 0 Clostridium perfringens 11019 1 1502 1 394958 1479 species 0 Clostridium taeniosporum Clostridium ljungdahlii species 0 1266 1538 1 16089 2 2614128 no rank 0 1 755731 1778 Clostridium sp. BNL1100 0 species Clostridium sp. SY8519 0 species 14311 1 1042156 84022 1 989 0 species Clostridium aceticum Clostridium argentinense 0 species 29341 1 1411 2605 1 1494 species 0 Clostridium cochlearium 2537 1 1501 Clostridium pasteurianum 0 species Clostridium estertheticum species 0 238834 1 1176 species 0 Clostridium beijerinckii 1520 1 3527 species 0 Clostridium novyi 1001 1542 1 species 0 Clostridium scatologenes 1938 1 1548 3495 1492 1 Clostridium butyricum species 0 Clostridium bornimense 0 species 1423 1 1216932 species 0 Clostridium tyrobutyricum 1 1519 1206 1 1488 1087 0 species Clostridium acetobutylicum 1 1561 2602 0 species Clostridium baratii 3281 1 36745 species 0 Clostridium saccharoperbutylacetonicum 1 46867 1639 Clostridium chauvoei species 0 Clostridium cellulovorans 0 species 1 1493 2288 2499 1534 1 0 species Clostridium kluyveri 0 species Clostridium autoethanogenum 84023 1 1228 1711 1513 1 0 species Clostridium tetani species 0 Clostridium botulinum 8612 1491 1 940 1497 1 species 0 Clostridium formicaceticum 217159 1 1951 Clostridium carboxidivorans 0 species Clostridium sporogenes species 0 1120 1509 1 1 189 0 family Peptostreptococcaceae 57897 10 186804 53393 1870884 2 1 genus 0 257 Clostridioides Clostridioides difficile 0 species 53136 1496 1 0 genus 917 1 1481960 917 1731 1 Peptoclostridium acidaminophilum 0 species 1411023 1 598 no rank 0 Peptostreptococcaceae bacterium oral taxon 929 species 0 1 2081703 598 713 186831 2 1 2 genus 0 Acetoanaerobium 1511 1 711 0 species Acetoanaerobium sticklandii 4 genus 0 Filifactor 1 2 44259 860 143361 1 856 Filifactor alocis species 0 genus 0 1227 1849828 1 1505 1 1227 0 species Paeniclostridium sordellii 102321 538999 10 no rank 0 53405 1392389 2 1 Intestinimonas 177 0 genus Intestinimonas butyriciproducens 0 species 53228 1 1297617 1 0 family 4 Clostridiales Family XVII. Incertae Sedis 1228 539000 3 Thermaerobacter 0 genus 9 1 73918 2 1224 species 0 Thermaerobacter marianensis 1215 73919 1 1 Clostridiales Family XIII. Incertae Sedis 5 0 family 2525 543314 4 species 0 [Eubacterium] sulci 1428 1 143393 2 86331 1092 Mogibacterium 5 0 genus 1 Mogibacterium diversum species 0 114527 1 1087 genus 0 45163 2717089 1 0 species Mordavella sp. Marseille-P3756 2086584 1 45163 1724 543349 3 1 Symbiobacteriaceae family 0 1 9 0 genus Symbiobacterium 1 2 2733 1723 0 species Symbiobacterium thermophilum 2734 1 1714 order 0 2589 53433 8 1 family 0 7 Halobacteroidaceae 1027 4 53434 2 42417 603 Halobacteroides 2 0 genus 1 601 1 42422 Halobacteroides halobius species 0 0 genus 417 1 28186 species 0 Acetohalobium arabaticum 28187 1 417 1562 4 972 0 family 32636 1 436 0 genus 436 31909 1 Halothermothrix orenii 0 species genus 0 4 Halanaerobium 1 2330 3 1126 Halanaerobium hydrogeniformans 0 species 1 656519 458 0 species Halanaerobium praevalens 2331 1 664 Limnochordia 3 0 class 1 1676648 5 764 761 4 1676649 1 Limnochordales 0 order 14 747 1676650 3 1 13 family 0 Limnochordaceae 734 1676651 2 1 Limnochorda 0 genus 6 species 0 Limnochorda pilosa 1 1555112 728 200795 44 8707 Chloroflexi 7 phylum 0 1 1380 1382928 5 1 18 class 0 Ardenticatenia 1382929 4 1362 0 order 25 Ardenticatenales 1 9 family 0 Ardenticatenaceae 1 1382930 3 1337 Candidatus Promineofilum 0 genus 6 1 1988031 2 1328 1322 1806508 1 0 species Candidatus Promineofilum breve Dehalococcoidia 0 class 3 1 301297 8 1718 1 Dehalogenimonas 0 genus 2 751 3 670486 1 552810 493 species 0 Dehalogenimonas lykanthroporepellens 1 1839801 256 Dehalogenimonas formicexedens 0 species 1 2 order 0 Dehalococcoidales 964 4 1202465 1 family 0 1 Dehalococcoidaceae 962 3 1202464 61434 2 961 0 genus 1 61435 803 Dehalococcoides mccartyi 0 species 237581 1 158 0 no rank 158 1522671 1 Dehalococcoides sp. UCH007 species 0 5 class 0 Caldilineae 1 475962 5 717 712 475963 4 1 Caldilineales order 0 7 Caldilineaceae 3 0 family 1 3 475964 705 702 2 233191 1 0 genus 32 Caldilinea 1 133453 670 Caldilinea aerophila 0 species 7 class 0 Chloroflexia 1 11 32061 2031 1 Chloroflexales 11 order 0 2024 32064 10 0 suborder 1044 5 1508594 1044 1106 5 1 Chloroflexaceae family 0 5 1 Chloroflexus 6 genus 0 1039 1107 4 684 2 1108 1 342 0 species Chloroflexus aurantiacus 1 480224 342 0 strain Chloroflexus sp. Y-400-fl 1 152260 349 Chloroflexus aggregans species 0 969 4 1508595 suborder 0 1508635 4 969 9 0 family Roseiflexaceae 1 Roseiflexus 16 0 genus 1 120961 3 960 2609473 1 482 0 no rank 1 357808 482 Roseiflexus sp. RS-1 0 species 462 120962 1 0 species Roseiflexus castenholzii 1 Thermomicrobia class 0 2 794 189775 8 215 189776 3 1 2 0 order Thermomicrobiales 213 2 189777 1 0 family 1 Thermomicrobiaceae genus 0 1 499 212 500 1 212 species 0 Thermomicrobium roseum 4 85000 577 subclass 0 4 85001 577 0 order 7 Sphaerobacterales 1 0 suborder 570 3 255728 85002 3 570 family 0 1 Sphaerobacteraceae 1 1 4 0 genus Sphaerobacter 569 2056 2 565 1 2057 species 0 Sphaerobacter thermophilus 2060 292625 6 class 0 292629 6 2060 15 order 0 Anaerolineales 1 1 7 family 0 Anaerolineaceae 2045 5 292628 2019482 1 235 0 genus 235 1986204 1 species 0 Brevefilum fermentans 1 Anaerolinea 0 genus 1 646 233189 2 1 167964 645 Anaerolinea thermophila 0 species no rank 0 1 1324991 1157 1157 1889813 1 Anaerolineaceae bacterium oral taxon 439 0 species 16324 35 1297 0 phylum 16324 35 188787 1 75 0 class Deinococci order 0 525 2762275 3 3 332247 525 Trueperaceae family 0 7 1 2 332248 518 genus 0 2 Truepera 1 516 332249 1 species 0 Truepera radiovictrix 1 113 order 0 Thermales 5394 68933 16 15 188786 5281 0 family 29 Thermaceae 1 937 208447 1 0 genus 187137 1 937 0 species Oceanithermus profundus 1080 65551 3 1 0 genus 10 Meiothermus 277 1 548 Meiothermus ruber 0 species species 0 Meiothermus silvanus 522 1 52022 1 genus 0 Marinithermus 1 2 186191 378 377 186192 1 Marinithermus hydrothermalis species 0 2857 270 8 1 97 0 genus Thermus 1 2619321 359 0 no rank Thermus sp. CCB_US3_UF1 species 0 1 1111069 359 1 456163 296 0 species Thermus parvatiensis Thermus thermophilus species 0 863 274 1 Thermus brockianus species 0 56956 1 188 species 0 Thermus scotoductus 37636 1 266 411 271 1 Thermus aquaticus 0 species 377 1 56957 Thermus oshimai 0 species 1 Deinococcales order 0 76 10330 15 118964 14 183710 10254 0 family 71 Deinococcaceae 1 13 1298 10183 Deinococcus 120 genus 0 1 Deinococcus radiodurans species 0 1299 1 669 Deinococcus gobiensis species 0 1125 1 502394 1 432329 542 Deinococcus peraridilitoris 0 species 0 no rank 2623546 1 820 species 0 Deinococcus sp. NW-56 2080419 1 820 Deinococcus puniceus species 0 714 1182568 1 884 1 1768108 species 0 Deinococcus actinosclerus 615 1 68909 species 0 Deinococcus geothermalis 1169 55148 1 Deinococcus proteolyticus species 0 0 species Deinococcus maricopensis 874 1 309887 1182571 1 1243 Deinococcus swuensis species 0 0 species Deinococcus soli Cha et al. 2016 1309411 1 753 species 0 Deinococcus deserti 655 310783 1 416 67819 5 phylum 0 1663419 5 416 3 0 class Fimbriimonadia 1 1 Fimbriimonadales 3 order 0 413 1663425 4 3 1663426 410 Fimbriimonadaceae 1 family 0 1 1 0 genus Fimbriimonas 1 1005038 2 409 Fimbriimonas ginsengisoli 0 species 1005039 1 408 1 35 phylum 0 Actinobacteria 571996 201174 640 Thermoleophilia 6 class 0 1 1497346 5 1141 4 588673 1135 order 0 51 Solirubrobacterales 1 3 320583 1084 14 family 0 Conexibacteraceae 1 1070 191494 2 1 97 genus 0 Conexibacter 973 191495 1 Conexibacter woesei 0 species no rank 0 4 1752188 361 104 1 1848754 Actinobacteria bacterium IMCC19121 species 0 1 1848756 75 Actinobacteria bacterium IMCC26103 0 species 80 1 1848755 Actinobacteria bacterium IMCC26077 species 0 1848255 1 102 Actinobacteria bacterium IMCC25003 species 0 1124 6 84995 1 Rubrobacteria class 0 10 Rubrobacterales 24 0 order 1 84996 5 1114 84997 4 1090 Rubrobacteraceae 0 family 4 1 genus 0 22 Rubrobacter 1 3 42255 1086 Rubrobacter xylanophilus species 0 1 49319 814 species 0 Rubrobacter radiotolerans 1 42256 250 706 84992 7 1 Acidimicrobiia 1 0 class 1 6 0 order Acidimicrobiales 705 6 84993 2448023 2 509 family 0 2 682522 509 Ilumatobacter genus 0 5 1 504 1 467094 Ilumatobacter coccineus species 0 8 family 0 Acidimicrobiaceae 1 3 84994 190 0 genus 1 Acidimicrobium 1 2 53634 182 species 0 Acidimicrobium ferrooxidans 53635 1 181 53694 30 84998 1 Coriobacteriia 213 0 class 1 order 0 262 Coriobacteriales 17075 13 84999 84107 6 9425 Coriobacteriaceae 274 family 0 1 1 84113 1732 no rank 0 Coriobacteriaceae bacterium 68-1-3 0 species 1531429 1 1732 Collinsella genus 0 16 1 102106 2 6535 0 species Collinsella aerofaciens 6519 1 74426 2 33870 884 Coriobacterium 1 genus 0 1 species 0 Coriobacterium glomerans 33871 1 883 7388 6 1643824 1 52 family 0 Atopobiaceae genus 0 432 2767353 1 432 1 1382 species 0 Atopobium parvulum Olsenella 66 genus 0 1 133925 4 6904 133926 1 2113 Olsenella uli species 0 3354 1805478 1 Olsenella sp. Marseille-P2300 0 species 0 no rank 1371 2638792 1 1371 1 712411 Olsenella sp. oral taxon 807 0 species 16 1643822 36406 Eggerthellales 283 order 0 1 1 Eggerthellaceae family 0 4244 36123 1643826 15 6725 644652 3 1 genus 0 39 Gordonibacter species 0 Gordonibacter massiliensis 1841863 1 3006 1335613 1 3680 Gordonibacter urolithinfaciens 0 species 1 genus 0 Cryptobacterium 1 84162 2 423 0 species Cryptobacterium curtum 1 84163 422 1 genus 0 177 Eggerthella 9444 84111 3 0 no rank 1307 1 2648737 1307 1 502558 species 0 Eggerthella sp. YY7918 Eggerthella lenta 0 species 7960 84112 1 genus 0 9316 1 447020 446660 1 9316 species 0 Adlercreutzia equolifaciens 1 0 genus 6 Slackia 2599 84108 2 84110 1 2593 Slackia heliotrinireducens species 0 Denitrobacterium 4 0 genus 1 79603 2 1257 1253 79604 1 Denitrobacterium detoxificans 0 species 2115 1981050 1 genus 0 2115 1944646 1 Phoenicibacter massiliensis 0 species 514935 1760 587 1 2209 0 class Actinobacteria order 0 1643684 3 1028 1 Nakamurellaceae 60 0 family 1028 3 85031 1 6 genus 0 Nakamurella 968 53460 2 Nakamurella multipartita species 0 962 53461 1 1 Actinopolysporales 0 order 3 565 622450 4 1 Actinopolysporaceae 2 family 0 562 622451 3 560 1849 2 1 Actinopolyspora 0 genus 1 species 0 Actinopolyspora erythraea 1 414996 559 85006 143 48607 Micrococcales 451 0 order 1 125316 3 438 2 0 family Beutenbergiaceae 1 1 3 genus 0 Beutenbergia 436 2 84756 Beutenbergia cavernae species 0 433 84757 1 1 Brevibacteriaceae 0 family 7 796 85019 3 1 genus 0 25 Brevibacterium 789 1696 2 species 0 Brevibacterium linens 1 1703 764 family 0 563 Micrococcaceae 1 1268 38 16864 1742989 2 694 0 genus 8 Glutamicibacter 1 686 256701 1 Glutamicibacter arilaitensis 0 species 389 2 1868332 1 0 genus 11 Neomicrococcus 378 556325 1 Neomicrococcus aestuarii species 0 1 0 genus 5 Micrococcus 705 2 1269 0 species Micrococcus luteus 1270 1 700 1 117 0 genus Arthrobacter 8339 1663 15 no rank 0 6583 12 235627 0 species Arthrobacter sp. LS16 892 1 1690248 310 1771959 1 0 species Arthrobacter sp. ATCC 21022 1849032 1 702 species 0 Arthrobacter sp. U41 Arthrobacter sp. ZXY-2 species 0 1806905 1 389 0 species Arthrobacter sp. ERGS1:01 603 1 1704044 362 1118963 1 0 species Arthrobacter sp. Rue61a Arthrobacter sp. YN 0 species 2020486 1 455 Arthrobacter sp. YC-RL1 species 0 1652545 1 711 Arthrobacter sp. PGP41 species 0 510 1 2079227 Arthrobacter sp. QXT-31 species 0 600 1357915 1 0 species Arthrobacter sp. FB24 290399 1 579 470 1 1494608 Arthrobacter sp. PAMC 25486 0 species 886 656366 1 Arthrobacter alpinus species 0 Arthrobacter crystallopoietes species 0 753 1 37928 28 genus 0 Kocuria 1 57493 4 1675 1 71999 483 Kocuria palustris species 0 519 72000 1 species 0 Kocuria rhizophila 0 species Kocuria flava 446860 1 645 193 2078575 1 genus 0 Arthrobacter sp. IHBB 11108 0 species 1618207 1 193 584 596707 2 1 0 genus 6 Sinomonas species 0 Sinomonas atrocyanea 1 37927 578 1 Pseudarthrobacter 21 0 genus 1872 4 1742993 species 0 Pseudarthrobacter chlorophenolicus 85085 1 588 species 0 Pseudarthrobacter phenanthrenivorans 1 361575 666 species 0 Pseudarthrobacter sulfonivorans 1 121292 597 0 genus 553 1742992 1 Paenarthrobacter aurescens species 0 553 43663 1 1 1645 143 0 genus 1646 1 143 0 species Renibacterium salmoninarum 1154 3 32207 1 Rothia 0 genus 1 0 species Rothia dentocariosa 1 2047 298 1 43675 855 0 species Rothia mucilaginosa Microbacteriaceae 0 family 137 1 47 85023 16289 1 Microbacterium 0 genus 95 6185 33882 14 283 84292 1 Microbacterium chocolatum species 0 8 2609290 3688 0 no rank 1 1916917 336 Microbacterium sp. 1.5R 0 species 1 1938334 316 species 0 Microbacterium sp. TPU 3598 species 0 Microbacterium sp. BH-3-3-3 1 1906742 459 species 0 Microbacterium sp. XT11 521 1 367477 Microbacterium sp. str. 'China' 0 species 2103230 1 531 0 species Microbacterium sp. CGR1 331 1696072 1 727 1 1795053 Microbacterium sp. PAMC 28756 0 species species 0 Microbacterium sp. No. 7 1 1714373 467 Microbacterium aurum 0 species 1 36805 628 1 300019 540 Microbacterium paludicola species 0 Microbacterium hominis species 0 541 162426 1 Microbacterium testaceum species 0 410 1 2033 Microcella 3 genus 0 1 337004 2 401 279828 1 398 species 0 Microcella alkaliphila 1 1 0 genus Cnuibacter 506 2 1759331 0 species Cnuibacter physcomitrellae 505 1 1619308 2034 4 1600 49 0 genus Curtobacterium 1 1 69373 566 Curtobacterium pusillum species 0 no rank 0 257496 2 985 376 1905847 1 0 species Curtobacterium sp. BH-2-1-1 609 1 1561023 0 species Curtobacterium sp. MR_MD2014 Rathayibacter 2 genus 0 1 33886 3 477 309 1 33888 0 species Rathayibacter tritici 1 145458 166 species 0 Rathayibacter toxicus genus 0 9 Leifsonia 1 2 110932 1081 1575 1 1072 0 species Leifsonia xyli 1705353 1 78 genus 0 78 708131 1 Aurantimicrobium minutum 0 species 1 genus 0 2 Microterricola 546 518733 2 0 species Microterricola viridarii 1 412690 544 0 no rank 248 1655488 2 0 clade 2 1655489 248 0 genus 529883 2 248 529884 1 177 Rhodoluna lacicola species 0 71 535712 1 species 0 Candidatus Rhodoluna planktonica 2 33877 763 genus 0 2 Agromyces 1 Agromyces aureus 0 species 1 453304 761 2 447237 541 Frondihabitans genus 0 1 1 no rank 0 540 1 2626248 540 1795630 1 Frondihabitans sp. PAMC 28766 0 species 3 69578 1427 Cryobacterium 8 0 genus 1 783 2649013 1 0 no rank 783 1 1978566 species 0 Cryobacterium sp. LW097 Cryobacterium arcticum species 0 636 670052 1 95 1 1434032 0 genus species 0 Pontimonas salivibrio 95 1159327 1 1573 6 2204 0 genus 107 Clavibacter 1 2097 28447 5 1 Clavibacter michiganensis 459 0 species subspecies 0 Clavibacter nebraskensis 31963 1 381 0 subspecies Clavibacter capsici 437 1 1874630 31964 1 382 Clavibacter sepedonicus subspecies 0 Clavibacter insidiosus subspecies 0 438 1 33014 no rank 0 62 1 577468 1 2038 62 genus 0 62 2039 1 Tropheryma whipplei 0 species 1872 6 85016 1 0 family 7 Cellulomonadaceae 43 genus 0 Cellulomonas 1 1707 5 1865 387 2620175 1 no rank 0 Cellulomonas sp. PSBB021 species 0 387 1 2003551 1708 1 477 species 0 Cellulomonas fimi 0 species Cellulomonas gilvus 343 1 11 615 1 1711 Cellulomonas flavigena species 0 1 19 family 0 Promicromonosporaceae 3157 9 85017 811 2 186188 1 Xylanimonas genus 0 4 Xylanimonas cellulosilytica 0 species 1 186189 807 1131 254250 3 1 Isoptericola genus 0 14 Isoptericola variabilis 0 species 1 139208 560 species 0 Isoptericola dokdonensis 1 372663 557 157920 3 1196 Cellulosimicrobium 14 genus 0 1 1710 1 589 0 species Cellulosimicrobium cellulans 593 2624466 1 no rank 0 Cellulosimicrobium sp. TH-20 0 species 1 1980001 593 1 Intrasporangiaceae 21 0 family 2319 85021 9 267408 2 731 Arsenicicoccus 11 0 genus 1 no rank 0 720 2663846 1 0 species Arsenicicoccus sp. oral taxon 190 720 1658671 1 1 genus 0 6 Serinicoccus 615 265976 2 1 1758689 609 species 0 Serinicoccus sp. JLT9 2 53357 405 5 genus 0 Intrasporangium 1 53358 1 400 0 species Intrasporangium calvum 53457 2 547 genus 0 23 Janibacter 1 1 857417 524 0 species Janibacter indicus family 0 2 Jonesiaceae 1 3 85022 83 2 43673 81 Jonesia 8 0 genus 1 species 0 Jonesia denitrificans 73 1 43674 1 15 family 0 Dermacoccaceae 1585 145357 7 550 745364 2 1 Luteipulveratus genus 0 1 0 species Luteipulveratus mongoliensis 549 571913 1 Dermacoccus 4 0 genus 1 2 57495 565 Dermacoccus nishinomiyaensis species 0 1274 1 561 1 Kytococcus genus 0 14 455 2 57499 Kytococcus sedentarius 0 species 1276 1 441 Dermabacteraceae 41 0 family 1 85020 10 3799 1 Brachybacterium 0 genus 44 3326 43668 6 675 1 1331682 Brachybacterium ginsengisoli 0 species Brachybacterium faecium 0 species 1 43669 631 Brachybacterium sp. VR2415 0 species 671 2017485 1 species 0 Brachybacterium sp. VM2412 1 2017484 613 1 2623841 692 no rank 0 692 1 1903186 Brachybacterium sp. P6-10-X1 species 0 Devriesea 1 genus 0 1 472568 2 145 1 472569 144 Devriesea agamarum species 0 0 genus 1 36739 287 Dermabacter vaginalis species 0 1630135 1 287 1 family 0 8 Sanguibacteraceae 700 145360 3 17 0 genus Sanguibacter 1 60919 2 692 60920 1 675 Sanguibacter keddieii species 0 0 family 1 Dermatophilaceae 1 3 85018 192 1 Dermatophilus 0 genus 5 191 2 1862 Dermatophilus congolensis species 0 186 1 1863 238770 85004 25 1 order 0 60 Bifidobacteriales 31953 24 238710 Bifidobacteriaceae 0 family 2324 1 244 196081 1 genus 0 244 1 78259 Scardovia inopinata species 0 509 1 2701 genus 0 509 1 2702 species 0 Gardnerella vaginalis 1 487 0 genus Bifidobacterium 235174 1678 19 1931 1 1683 Bifidobacterium angulatum 0 species 1753 158787 1 0 species Bifidobacterium scardovii Bifidobacterium choerinum species 0 35760 1 1027 1689 1 1129 Bifidobacterium dentium 0 species 0 species Bifidobacterium pseudocatenulatum 28026 1 65157 0 species Bifidobacterium adolescentis 1680 1 4041 17092 1685 1 Bifidobacterium breve species 0 22860 1686 2 1 Bifidobacterium catenulatum 7039 species 0 Bifidobacterium kashiwanohense subspecies 0 15821 1 630129 0 species Bifidobacterium pseudolongum 1 1694 1257 Bifidobacterium actinocoloniiforme 0 species 638619 1 463 350 1 1687 0 species Bifidobacterium coryneforme 0 species Bifidobacterium thermophilum 1 33905 836 10930 1681 1 Bifidobacterium bifidum 0 species Bifidobacterium animalis 0 species 1 28025 786 1 1691 434 0 species Bifidobacterium indicum 620 1684 1 Bifidobacterium asteroides 0 species 104021 216816 1 species 0 Bifidobacterium longum Parascardovia 0 genus 1 1 196082 2 459 458 1 78258 Parascardovia denticolens species 0 2039638 10 1139 0 order 0 family 1139 10 2162846 Candidatus Planktophila genus 0 4 1 622681 7 862 species 0 Candidatus Planktophila versatilis 215 1 1884905 0 species Candidatus Planktophila dulcis 1884914 1 123 Candidatus Planktophila vernalis 0 species 117 1884907 1 1 573600 65 Candidatus Planktophila limnetica 0 species 0 species Candidatus Planktophila lacus 1 1884913 203 0 species Candidatus Planktophila sulfonica 1884904 1 135 0 genus 2039639 3 277 1884916 1 48 species 0 Candidatus Nanopelagicus abundans species 0 Candidatus Nanopelagicus limnes 130 1884634 1 99 1884915 1 Candidatus Nanopelagicus hibericus 0 species 85012 16 8245 Streptosporangiales order 0 28 1 Thermomonosporaceae 0 family 7 1 2012 3 1091 1 Thermomonospora 25 0 genus 1084 2 2019 species 0 Thermomonospora curvata 1059 2020 1 1 Nocardiopsaceae 0 family 42 3458 7 83676 83677 2 526 Thermobifida genus 0 1 1 Thermobifida fusca species 0 525 2021 1 2013 4 2890 Nocardiopsis 33 genus 0 1 280236 1 894 0 species Nocardiopsis gilva Nocardiopsis dassonvillei 0 species 1 2014 1062 1 53437 901 species 0 Nocardiopsis alba 1 0 family 40 Streptosporangiaceae 3668 5 2004 83681 2 2171 34 genus 0 Nonomuraea 1 2593643 1 2137 0 no rank 1909395 1 2137 species 0 Nonomuraea sp. ATCC 55076 1457 2 2000 1 genus 0 22 Streptosporangium Streptosporangium roseum 0 species 1435 1 2001 0 order 15 Actinomycetales 1 2037 18 9325 2049 17 9310 1799 family 0 Actinomycetaceae 1 35 0 genus Mobiluncus 1 2050 2 1675 1640 2051 1 species 0 Mobiluncus curtisii 377 1653174 1 genus 0 0 species Actinotignum schaalii 377 1 59505 4212 1654 9 1 Actinomyces 0 genus 96 544580 1 589 Actinomyces oris species 0 1852377 1 260 0 species Actinomyces pacaensis 0 no rank 1921 2609248 3 644 1 712122 species 0 Actinomyces sp. oral taxon 414 1 1851395 658 Actinomyces sp. Chiba101 0 species 2081702 1 619 species 0 Actinomyces sp. oral taxon 897 208 1 1912795 Actinomyces sp. VUL4_3 species 0 730 1 111015 species 0 Actinomyces radicidentis Actinomyces gaoshouyii species 0 408 1 1960083 genus 0 730 1 1069494 species 0 Trueperella pyogenes 1 1661 730 226 2 28263 1 Arcanobacterium 2 0 genus 28264 1 224 0 species Arcanobacterium haemolyticum 2529408 1 291 genus 0 291 52773 1 Actinomyces meyeri species 0 Micromonosporales order 0 34 1 19 85008 12553 18 28056 12519 Micromonosporaceae family 0 186 1 3 168694 1219 genus 0 11 Salinispora 1 1 168697 701 Salinispora arenicola species 0 species 0 Salinispora tropica 507 168695 1 51 0 genus Actinoplanes 1 6 1865 5679 Actinoplanes friuliensis species 0 1 196914 1245 0 no rank 2626549 3 3311 1018 134676 1 Actinoplanes sp. SE50/110 0 species 0 species Actinoplanes sp. N902-109 1275 1 649831 0 species Actinoplanes sp. SE50 1 2033844 1018 species 0 Actinoplanes missouriensis 1866 1 1072 Micromonospora genus 0 65 1 1873 4 2453 0 species Verrucosispora maris 1 1003110 664 47850 1 821 species 0 Micromonospora aurantiaca 2617518 1 903 no rank 0 903 648999 1 Micromonospora sp. L5 0 species Plantactinospora 60 genus 0 1 673534 4 2982 2922 2631981 3 0 no rank 974 1 2108470 species 0 Plantactinospora sp. BC1 2024580 1 1054 Plantactinospora sp. KBS50 species 0 894 2071627 1 0 species Plantactinospora sp. BB1 42 85010 25579 order 0 42 Pseudonocardiales 1 41 2070 25537 378 family 0 Pseudonocardiaceae 1 3 40566 2659 58 0 genus Actinosynnema 1 Actinosynnema pretiosum species 0 1394 1 42197 1207 40567 1 0 species Actinosynnema mirum 452 2 1851 1 Saccharomonospora 1 genus 0 1 1852 451 0 species Saccharomonospora viridis 1 Lentzea 0 genus 8 1016 165301 2 1008 1586287 1 Lentzea guizhouensis 0 species 0 genus 2 Prauserella 1 2 142577 582 0 species Prauserella marina 580 1 530584 Saccharothrix 4 0 genus 1 2 2071 1230 species 0 Saccharothrix espanaensis 1 103731 1226 Saccharopolyspora 0 genus 5 1 2 1835 1072 0 species Saccharopolyspora erythraea 1 1836 1067 1813 7 7029 85 genus 0 Amycolatopsis 1 1934 31958 1 Amycolatopsis orientalis species 0 1 208439 803 Amycolatopsis japonica 0 species 2 2618356 1964 no rank 0 1911175 1 894 Amycolatopsis sp. BJA-103 0 species 0 species Amycolatopsis sp. AA4 1896961 1 1070 Amycolatopsis methanolica 0 species 1 1814 989 33910 1 1254 Amycolatopsis mediterranei species 0 Kibdelosporangium 6 genus 0 1 2029 2 862 Kibdelosporangium phytohabitans species 0 1 860235 856 3231 65496 6 1 0 genus 66 Actinoalloteichus no rank 0 1444 2 2644606 species 0 Actinoalloteichus sp. GBA129-24 1 1612551 746 species 0 Actinoalloteichus sp. AHMU CJ021 698 1 2072503 1 1612552 721 species 0 Actinoalloteichus sp. ADI127-7 574 1 1470176 Actinoalloteichus hoggarensis species 0 0 species Actinoalloteichus hymeniacidonis 340345 1 426 Pseudonocardia 75 0 genus 1 1847 8 4792 0 no rank 2619320 6 3904 Pseudonocardia sp. AL041005-10 species 0 659 445576 1 Pseudonocardia sp. HH130630-07 species 0 561 1 1690815 1 1096856 731 Pseudonocardia sp. EC080619-01 species 0 547 1 1096868 species 0 Pseudonocardia sp. EC080625-04 730 1688404 1 Pseudonocardia sp. EC080610-09 0 species species 0 Pseudonocardia sp. HH130629-09 676 1 1641402 813 240495 1 Pseudonocardia dioxanivorans 0 species 1393 2 43356 1 Kutzneria 4 0 genus Kutzneria albida 0 species 1389 43357 1 674734 2 841 Alloactinosynnema 4 0 genus 1 0 no rank 2636053 1 837 species 0 Alloactinosynnema sp. L-07 837 1653480 1 0 order 25 Geodermatophilales 1 8 1643682 2613 2588 7 85030 1 75 family 0 Geodermatophilaceae 481 2 38501 1 Blastococcus 5 genus 0 Blastococcus saxobsidens species 0 138336 1 476 1 Geodermatophilus genus 0 6 868 1860 2 species 0 Geodermatophilus obscurus 862 1861 1 2 88138 1164 Modestobacter 18 0 genus 1 0 species Modestobacter marinus 477641 1 1146 1 0 order 510 Corynebacteriales 69027 85007 160 Tsukamurellaceae family 0 4 1 85028 4 1296 1 0 genus 26 Tsukamurella 1292 2060 3 374 1 2061 Tsukamurella paurometabola species 0 species 0 Tsukamurella tyrosinosolvens 892 57704 1 Gordoniaceae 37 family 0 1 85026 9 3319 1 59 genus 0 Gordonia 3282 2053 8 2 2657482 1006 no rank 0 1 2059875 517 Gordonia sp. YC-JH1 species 0 Gordonia sp. KTR9 species 0 337191 1 489 472 2055 1 Gordonia terrae species 0 0 species Gordonia polyisoprenivorans 84595 1 477 Gordonia phthalatica 0 species 487 1 1136941 1 1004901 356 species 0 Gordonia iterans 2054 1 425 0 species Gordonia bronchialis 136 697024 1 no rank 0 genus 0 1 1847725 136 136 1 1528099 species 0 Lawsonella clevelandensis 1 108 family 0 Mycobacteriaceae 26064 56 1762 0 genus 2 1073531 819 433 1788 1 Mycobacterium terrae species 0 386 875328 1 species 0 Mycobacterium sinense 2293 670516 5 genus 0 Mycobacterium stephanolepidis 0 species 417 1520670 1 Mycobacterium abscessus 0 species 859 1 36809 Mycobacterium saopaulense 0 species 387 1 1578165 0 species Mycobacterium immunogenum 293 1 83262 Mycobacterium chelonae 0 species 337 1774 1 1866885 13 7834 0 genus 1 1797 544 Mycobacterium thermoresistibile species 0 0 species Mycobacterium aurum 1 1791 772 1 1800 598 Mycobacterium chubuense species 0 572 1 1804 0 species Mycobacterium gilvum Mycobacterium goodii species 0 134601 1 699 Mycobacterium vanbaalenii 0 species 525 1 110539 561 758802 1 species 0 Mycobacterium litorale Mycobacterium neoaurum 0 species 1 1795 526 1810 1 683 Mycobacterium vaccae species 0 621 1 1771 0 species Mycobacterium phlei 441 1766 1 species 0 Mycobacterium fortuitum Mycobacterium rhodesiae species 0 445 1 36814 species 0 Mycobacterium smegmatis 1772 1 847 697025 1 312 0 genus 639313 1 312 Hoyosella subflava 0 species 1146 0 genus Mycobacterium 1 1763 34 14698 526 1768 1 species 0 Mycobacterium kansasii 29311 1 290 species 0 Mycobacterium haemophilum 261524 1 348 0 species Mycobacterium liflandii Mycobacterium ulcerans 0 species 437 1 1809 Mycobacterium leprae 0 species 1769 1 216 13 2642494 6220 no rank 0 518 1 212767 Mycobacterium sp. JS623 species 0 species 0 Mycobacterium sp. YC-RL4 720 1682113 1 species 0 Mycobacterium sp. WY10 463 1920667 1 354 189918 1 0 species Mycobacterium sp. KMS 0 species Mycobacterium sp. JLS 1 164757 395 Mycobacterium sp. MCS species 0 344 1 164756 0 species Mycobacterium sp. VKM Ac-1817D 1273687 1 406 1 1879023 794 0 species Mycobacterium sp. djl-10 0 species Mycobacterium sp. EPa45 646 1 1545728 Mycobacterium sp. PYR15 species 0 1 2051552 580 326 1561223 1 species 0 Mycobacterium sp. QIA-37 Mycobacterium sp. NRRL B-3805 species 0 526 1 1570328 148 1 1168287 Mycobacterium sp. MOTT36Y 0 species 1781 1 398 species 0 Mycobacterium marinum species group 0 77643 4 1029 0 species Mycobacterium canettii 246 1 78331 783 1773 3 1 Mycobacterium tuberculosis 298 species 0 239 33894 1 biotype 0 Mycobacterium africanum 246 1 1765 biotype 0 Mycobacterium bovis Mycobacterium dioxanotrophicus species 0 653 1 482462 8 120793 2969 0 species group 1 701042 401 0 species Mycobacterium marseillense 556 1 339268 Mycobacterium colombiense 0 species species 0 Mycobacterium paraintracellulare 1138383 1 147 929 1 1764 0 species Mycobacterium avium Mycobacterium intracellulare 230 0 species 1 1767 4 936 Mycobacterium chimaera subspecies 0 1 222805 410 0 subspecies Mycobacterium yongonense 1203599 1 176 0 subspecies Mycobacterium indicus pranii 120 1 35617 466 1 2249310 species group 0 466 1 722731 Mycobacterium shigaense species 0 family 0 3 85029 867 3 37914 867 5 genus 0 Dietzia 1 no rank 0 2617939 1 493 1 712270 493 species 0 Dietzia sp. oral taxon 368 369 1 499555 species 0 Dietzia timorensis 1 family 0 125 Corynebacteriaceae 19091 1653 52 18966 51 1716 1 genus 0 394 Corynebacterium 327 1231000 1 0 species Corynebacterium lactis Corynebacterium camporealensis 0 species 161896 1 310 0 species Corynebacterium falsenii 108486 1 550 species 0 Corynebacterium uterequi 1 1072256 532 191 1719 1 0 species Corynebacterium pseudotuberculosis 1 28028 323 species 0 Corynebacterium flavescens 575200 1 405 Corynebacterium maris species 0 0 species Corynebacterium atypicum 270 191610 1 115 35755 1 0 species Corynebacterium kutscheri 336 187491 1 Corynebacterium glaucum 0 species 187 35757 1 species 0 Corynebacterium cystitidis 1 1121358 431 Corynebacterium doosanense 0 species Corynebacterium epidermidicanis 0 species 196 1050174 1 0 species Corynebacterium glyciniphilum 1 1404244 398 506 1 1718 Corynebacterium glutamicum 0 species 404 152794 1 Corynebacterium efficiens 0 species no rank 0 545 2 2624378 232 1 1487956 Corynebacterium sp. ATCC 6931 species 0 Corynebacterium sp. NML98-0116 0 species 313 1 702967 species 0 Corynebacterium mustelae 159 571915 1 species 0 Corynebacterium simulans 1 146827 602 species 0 Corynebacterium callunae 1 1721 237 574 1 225326 Corynebacterium halotolerans 0 species 1 161895 175 Corynebacterium phocae 0 species species 0 Corynebacterium striatum 1 43770 903 181 1705 1 Corynebacterium stationis 0 species 1 401472 374 species 0 Corynebacterium ureicelerivorans 376 136857 1 species 0 Corynebacterium testudinoris Corynebacterium ammoniagenes 0 species 207 1 1697 0 species Corynebacterium singulare 329 161899 1 1 1717 284 Corynebacterium diphtheriae species 0 211 1652495 1 0 species Corynebacterium crudilactis Corynebacterium kroppenstedtii species 0 161879 1 200 Corynebacterium jeikeium 0 species 1 38289 699 1 1727 484 Corynebacterium variabile species 0 1 203263 325 0 species Corynebacterium aquilae 283 1 89154 Corynebacterium terpenotabidum species 0 Corynebacterium imitans species 0 156978 1 517 227 160386 1 0 species Corynebacterium casei 1 349751 470 Corynebacterium marinum 0 species Corynebacterium humireducens 0 species 690 1 1223514 Corynebacterium argentoratense species 0 254 1 42817 Corynebacterium aurimucosum species 0 169292 1 438 1 1408191 263 Corynebacterium deserti 0 species 1 191493 589 Corynebacterium sphenisci species 0 Corynebacterium frankenforstense 0 species 1 1230998 624 0 species [Brevibacterium] flavum 92706 1 216 1 258224 191 species 0 Corynebacterium resistens Corynebacterium ulcerans species 0 65058 1 294 809 38305 1 species 0 Corynebacterium vitaeruminis species 0 Corynebacterium urealyticum 1 43771 361 85025 31 17440 family 0 110 Nocardiaceae 1 Rhodococcus 423 0 genus 1 1827 23 10791 Rhodococcus erythropolis 0 species 1833 1 438 1829 1 299 Rhodococcus rhodochrous species 0 no rank 0 12 192944 4503 1033922 1 735 Rhodococcus sp. WB1 species 0 429 1 1727214 Rhodococcus sp. H-CA8f species 0 species 0 Rhodococcus sp. 2G 1570939 1 266 218 679318 1 species 0 Rhodococcus sp. WMMA185 species 0 Rhodococcus sp. p52 1 935199 377 Rhodococcus sp. B7740 0 species 414 1564114 1 1723645 1 296 species 0 Rhodococcus sp. 008 Rhodococcus sp. BH4 species 0 247 1 1807790 1045808 1 323 Rhodococcus sp. YL-1 0 species 1 1653479 378 Rhodococcus sp. PBTS 2 species 0 0 species Rhodococcus sp. MTM3W5.2 456 1805827 1 Rhodococcus sp. PBTS 1 0 species 364 1 1653478 132919 1 697 species 0 Rhodococcus jostii 43767 1 622 species 0 Rhodococcus hoagii 420 103816 1 species 0 Rhodococcus pyridinivorans Rhodococcus aetherivorans species 0 696 191292 1 355 1 1828 Rhodococcus fascians species 0 species 0 Rhodococcus ruber 541 1830 1 Rhodococcus opacus species 0 1521 37919 1 276 1 334542 Rhodococcus qingshengii 0 species 1 genus 0 111 Nocardia 6539 7 1817 1 135487 1597 Nocardia cyriacigeorgica 0 species 455432 1 903 Nocardia terpenica 0 species 1 37326 1508 species 0 Nocardia brasiliensis 1 37332 891 Nocardia seriolae species 0 799 1 37330 0 species Nocardia nova 0 species Nocardia farcinica 37329 1 730 304 316606 3 1 Segniliparaceae 0 family 5 Segniliparus 6 genus 0 1 2 286801 299 293 286802 1 0 species Segniliparus rotundus 2854 7 85013 1 6 0 order Frankiales 2848 74712 6 1 31 0 family Frankiaceae 2817 5 1854 1 Frankia 20 genus 0 1 1859 779 Frankia alni 0 species 810 2632575 1 no rank 0 Frankia sp. EAN1pec species 0 1 298653 810 0 species Frankia casuarinae 391 1 106370 species 0 Frankia inefficax 817 298654 1 1 0 order 4 Catenulisporales 1338 414714 4 1334 3 414877 1 7 0 family Catenulisporaceae 0 genus 12 Catenulispora 1 414878 2 1327 Catenulispora acidiphila species 0 304895 1 1315 622452 3 835 order 0 26 0 family Kineosporiaceae 1 83778 3 835 2 33981 809 Kineococcus 4 genus 0 1 805 131568 1 0 species Kineococcus radiotolerans 14002 32 85009 1 Propionibacteriales 32 order 0 0 family 78 Propionibacteriaceae 1 18 31957 9120 2882 72763 5 1 Tessaracoccus genus 0 19 634 1 399497 Tessaracoccus flavescens species 0 Tessaracoccus aquimaris species 0 758 1 1332264 621 1 1610493 Tessaracoccus flavus species 0 850 2635419 1 no rank 0 Tessaracoccus sp. T2.5-30 species 0 850 1 1909732 1 5 genus 0 Cutibacterium 1495 1912216 4 443 1747 1 0 species Cutibacterium acnes 427 1 33011 Cutibacterium granulosum 0 species 0 species Cutibacterium avidum 33010 1 620 1912215 2 911 Acidipropionibacterium 0 genus 4 1 907 1748 1 Acidipropionibacterium acidipropionici 0 species 1408 1743 3 1 0 genus 33 Propionibacterium 2608905 1 273 0 no rank 1 671223 273 species 0 Propionibacterium sp. oral taxon 193 1744 1 1102 Propionibacterium freudenreichii 0 species genus 0 203133 1 1258 2633994 1 1258 no rank 0 1 1871034 1258 0 species Propionimicrobium sp. Marseille-P3275 0 genus 29404 1 553 553 29405 1 Microlunatus phosphovorus 0 species genus 0 535 1 2801844 0 species Pseudopropionibacterium propionicum 1 1750 535 4850 85015 13 1 Nocardioidaceae 133 0 family 929 2 182639 1 Kribbella genus 0 19 182640 1 910 Kribbella flavida 0 species 1839 4 1955 Nocardioides 46 genus 0 1 450734 1 536 0 species Nocardioides dokdonensis Nocardioides sp. 78 species 0 1 2045452 621 2615069 1 752 no rank 0 752 196162 1 Nocardioides sp. JS614 0 species 1 Pimelobacter 0 genus 25 837 2 2044 Pimelobacter simplex 0 species 812 2045 1 Aeromicrobium 0 genus 2 1 2 2040 410 Aeromicrobium erythreum 0 species 408 1 2041 586 116071 2 1 Micropruina 7 genus 0 species 0 Micropruina glycogenica 75385 1 579 155 52018 1 0 no rank Actinobacteria bacterium IMCC26256 species 0 1 1650658 155 520 2 1643818 no rank 0 1 Thermobispora 0 genus 4 520 2 147067 516 2006 1 Thermobispora bispora 0 species 0 order 153 Streptomycetales 1 85011 82 74352 2062 81 74199 574 0 family Streptomycetaceae 1 genus 0 43 Kitasatospora 1 5 2063 4399 0 species Kitasatospora albolonga 68173 1 860 0 species Kitasatospora aureofaciens 923 1894 1 1432 2633591 1 0 no rank 0 species Kitasatospora sp. MMS16-BH015 1432 1 2018025 1 2066 1141 Kitasatospora setae species 0 75 1883 69226 Streptomyces 2207 genus 0 1 species 0 Streptomyces lavendulae 1 1914 800 species 0 Streptomyces reticuli 809 1926 1 species 0 Streptomyces niveus 1 193462 682 1 1888 1547 species 0 Streptomyces albus Streptomyces gilvosporeus species 0 553510 1 918 Streptomyces hygroscopicus species 0 1912 1 2675 Streptomyces ambofaciens 0 species 1889 1 774 Streptomyces clavuligerus 0 species 1901 1 899 47763 1 2344 Streptomyces lydicus species 0 1169025 1 548 Streptomyces pratensis 0 species 68249 1 1487 species 0 Streptomyces pactum Streptomyces lividans species 0 1916 1 882 0 species Streptomyces scabiei 1930 1 862 92644 1 1097 0 species Streptomyces malaysiensis Streptomyces violaceoruber species 0 822 1 1935 Streptomyces formicae species 0 1616117 1 663 689 1038928 1 Streptomyces xinghaiensis 0 species Streptomyces alboflavus 0 species 1 67267 955 Streptomyces chartreusis 0 species 790 1969 1 612 1 68202 Streptomyces fulvissimus species 0 Streptomyces sp. XZHG99 0 species 768 1 2049881 0 species Streptomyces venezuelae 1618 54571 1 1 1915 1188 Streptomyces lincolnensis 0 species 876 1 68570 species 0 Streptomyces albulus species 0 Streptomyces pluripotens 495 1 1355015 38300 1 823 Streptomyces pristinaespiralis 0 species Streptomyces violaceusniger 0 species 1 68280 1232 0 species Streptomyces sp. S10(2016) 1783515 1 805 1 285473 675 0 species Streptomyces rubrolavendulae Streptomyces avermitilis 0 species 683 1 33903 982 1 1642299 species 0 Streptomyces alfalfae 68214 1 882 Streptomyces griseochromogenes 0 species 1 362257 1036 0 species Streptomyces vietnamensis 648 1 1907 0 species Streptomyces glaucescens Streptomyces parvulus 0 species 886 1 146923 1730 2 1477431 species group 0 species 0 Streptomyces coelicolor 1902 1 810 0 species Streptomyces sampsonii 920 1 42239 1940 1 799 0 species Streptomyces albireticuli 0 no rank 24 2593676 19078 1 206662 737 Streptomyces sp. FR-008 0 species 1 1262452 991 Streptomyces sp. 769 0 species 553 862751 1 Streptomyces sp. SirexAA-E species 0 0 species Streptomyces sp. 3211 682 1 1964449 Streptomyces sp. CCM_MD2014 species 0 1561022 1 776 637 1265601 1 0 species Streptomyces sp. PAMC 26508 Streptomyces sp. TN58 species 0 716 234612 1 879 1 1812480 species 0 Streptomyces sp. fd1-xmd 667 1649184 1 Streptomyces sp. CFMR 7 species 0 Streptomyces sp. SAT1 species 0 721 1 1849967 Streptomyces sp. CLI2509 species 0 632 1984801 1 0 species Streptomyces sp. MOE7 784 1 1961713 species 0 Streptomyces sp. CdTB01 1725411 1 993 1 1661694 709 species 0 Streptomyces sp. Tue 6075 444103 1 927 0 species Streptomyces sp. CNQ-509 species 0 Streptomyces sp. WAC00288 687 2094021 1 1495638 1 1183 species 0 Streptomyces sp. M56 0 species Streptomyces sp. Mg1 1 465541 836 1837283 1 617 Streptomyces sp. S8 0 species 0 species Streptomyces sp. CMB-StM0423 2059884 1 905 673 1 1972846 0 species Streptomyces sp. Sge12 1065 1841249 1 0 species Streptomyces sp. RTd22 1751294 1 665 0 species Streptomyces sp. 4F Streptomyces sp. P3 species 0 1043 2135430 1 1177 29303 1 species 0 Streptomyces cattleya 1950 1 712 0 species Streptomyces peucetius Streptomyces noursei 0 species 952 1 1971 0 species Streptomyces cyaneogriseus 1 68192 815 species 0 Streptomyces bingchenggensis 379067 1 1422 1487 2 629295 species group 0 753 1482558 1 species subgroup 0 species 0 Streptomyces globisporus 1 1908 753 0 species subgroup 1 1482596 734 species 0 Streptomyces griseus 734 1 1911 Streptomyces xiamenensis species 0 869 1 408015 732 1437453 1 Streptomyces leeuwenhoekii species 0 species 0 Streptomyces puniciscabiei 1 164348 921 Streptomyces collinus 0 species 42684 1 806 1 75293 1067 Streptomyces autolyticus species 0 order 0 3 1643683 194 1 Acidothermaceae family 0 3 194 85032 3 191 2 28048 1 Acidothermus 0 genus 1 190 28049 1 Acidothermus cellulolyticus 0 species 85014 4 1025 1 0 order Glycomycetales 1 1024 3 85034 1 Glycomycetaceae 0 family 31 1 Stackebrandtia 6 0 genus 993 283810 2 Stackebrandtia nassauensis species 0 1 283811 987 clade 0 136 1798711 33309 Cyanobacteria 7 phylum 0 1 136 1117 33309 0 subclass 7956 37 1301283 1150 15 2751 Oscillatoriales order 0 14 1 3 1892249 320 4 family 0 Cyanothecaceae 1 genus 0 9 Cyanothece 1 43988 2 316 no rank 0 307 1 2649277 Cyanothece sp. PCC 7425 species 0 307 395961 1 family 0 1 1892255 325 325 241421 1 genus 0 325 241425 1 0 species Crinalium epipsammum 1892252 4 685 0 family 1 Microcoleaceae 1 1 1205 412 genus 0 412 1 1206 0 species Trichodesmium erythraeum 2 44471 272 0 genus 2 Microcoleus 1 no rank 0 270 1 2642155 270 1 1173027 0 species Microcoleus sp. PCC 7113 0 family 980 4 1892254 284 1155738 1 0 genus Moorea producens 0 species 1 1155739 284 1 1 genus 0 Oscillatoria 696 1158 3 Oscillatoria nigro-viridis 0 species 329 1 482564 Oscillatoria acuminata 0 species 366 1 118323 2 1892251 427 0 family 2 genus 0 Geitlerinema 1 63132 2 427 0 no rank 425 2648775 1 Geitlerinema sp. PCC 7407 0 species 1 1173025 425 22 1118 5205 order 0 6 Chroococcales 1 Chroococcaceae family 0 6 1 7 1890464 1400 2 102231 185 Gloeocapsa 2 genus 0 1 2623012 1 183 no rank 0 0 species Gloeocapsa sp. PCC 7428 1 1173026 183 955 3 669357 1 5 genus 0 Geminocystis 2625037 2 950 no rank 0 Geminocystis sp. NIES-3708 species 0 1615909 1 590 Geminocystis sp. NIES-3709 0 species 360 1617448 1 genus 0 254 268175 1 2648896 1 254 no rank 0 254 2005460 1 Chondrocystis sp. NIES-4102 0 species 0 family 1998 1890450 8 genus 0 283 263510 1 species 0 2546360 1 283 1 43989 283 Cyanothece sp. ATCC 51142 strain 0 2 2546365 562 genus 0 2 2546366 562 species 0 0 strain Cyanothece sp. PCC 8802 395962 1 298 0 strain Cyanothece sp. PCC 8801 264 41431 1 genus 0 148 1 1453359 148 1 713887 0 species Candidatus Atelocyanobacterium thalassa 204 92682 2 no rank 0 Halothece genus 0 31 1 2 76023 204 1 2632878 173 no rank 0 species 0 Halothece sp. PCC 7418 1 65093 173 28070 2 801 0 genus 434 2546356 1 0 species Cyanothece sp. PCC 7424 strain 0 434 65393 1 0 species 367 1 2546359 497965 1 367 Cyanothece sp. PCC 7822 0 strain 1 1 0 family Cyanobacteriaceae 823 2 1890452 0 genus 102234 1 822 822 379064 1 species 0 Cyanobacterium aponinum 1 0 family Microcystaceae 1 1890449 4 978 3 1125 977 Microcystis genus 0 1 1 no rank 0 337 2643300 1 1 1967666 337 0 species Microcystis sp. MC19 Microcystis aeruginosa 0 species 639 1 1126 8866 31 1161 1 Nostocales order 0 11 1 1219117 401 no rank 0 401 1940762 1 Nostocales cyanobacterium HT-58-2 species 0 5253 17 1162 1 Nostocaceae 0 family 10 Anabaena 1 0 genus 1 4 1163 1242 2619674 2 906 0 no rank species 0 Anabaena sp. WA102 1 1647413 423 species 0 Anabaena sp. 90 46234 1 483 335 1 1165 0 species Anabaena cylindrica 0 genus 841 264688 2 species 0 Trichormus azollae 304 1164 1 species 0 Trichormus variabilis 1 264691 537 3160 1177 10 1 genus 0 18 Nostoc 471 272131 1 species 0 Nostoc punctiforme no rank 0 1939 7 2593658 0 species Nostoc sp. CENA543 259 1 1869241 321 1 1618022 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 0 0 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 289 1 1261031 0 species Nostoc sp. NIES-3756 286 1 1751286 0 species Nostoc sp. PCC 7107 1 317936 276 1 28072 218 Nostoc sp. PCC 7524 0 species 290 1 103690 Nostoc sp. PCC 7120 0 species Nostoc flagelliforme species 0 1 1306274 732 0 family 2349 2661849 8 Calothrix 4 0 genus 1 8 1186 2349 Calothrix parietina 0 species 32054 1 361 0 no rank 6 2619626 1984 0 species Calothrix sp. NIES-3974 256 2005462 1 species 0 Calothrix sp. NIES-4071 511 1 2005469 277 1954171 1 Calothrix sp. NIES-2098 species 0 0 species Calothrix sp. NIES-4101 490 2005461 1 237 1 1337936 Calothrix sp. 336/3 species 0 0 species Calothrix sp. PCC 7507 213 99598 1 1 family 0 20 Rivulariaceae 593 1185 3 Rivularia 0 genus 5 1 373984 2 573 568 1 2676603 0 no rank 568 373994 1 species 0 Rivularia sp. PCC 7116 family 0 259 1892263 1 1190 1 259 genus 0 no rank 0 259 1 494603 0 species Fischerella sp. NIES-3754 1752063 1 259 10 0 class Gloeobacteria 1 307596 6 1209 1199 307595 5 1 order 0 14 Gloeobacterales Gloeobacteraceae 7 0 family 1 1890422 4 1185 1 0 genus 26 Gloeobacter 1178 3 33071 species 0 Gloeobacter kilaueensis 1 1416614 471 0 species Gloeobacter violaceus 681 1 33072 no rank 0 1983111 1 186 cyanobacterium endosymbiont of Epithemia turgida species 0 186 1 718217 1 Synechococcales 131 0 order 14004 53 1890424 581 5 1890428 1 Merismopediaceae 1 family 0 1142 4 580 Synechocystis genus 0 10 1 570 2640012 3 0 no rank 128 1147 1 species 0 Synechocystis sp. PCC 6714 species 0 Synechocystis sp. PCC 6803 1148 1 221 221 2116702 1 Synechocystis sp. IPPAS B-1465 species 0 9436 1890426 33 1 35 family 0 Synechococcaceae 1 Cyanobium 18 0 genus 2033 3 167375 0 species Cyanobium gracile 59930 1 952 1 2627006 1063 0 no rank Cyanobium sp. NIES-981 0 species 1851505 1 1063 1 146785 144 0 genus species 0 Thermosynechococcus elongatus 144 1 146786 2 13034 226 31 0 genus Dactylococcopsis 1 Dactylococcopsis salina species 0 195 292566 1 6998 1129 26 1 0 genus 185 Synechococcus 1 33070 219 Synechococcus lividus 0 species 224 1 32046 species 0 Synechococcus elongatus 0 no rank 6370 2626047 23 423 321332 1 0 species Synechococcus sp. JA-2-3B'a(2-13) 1 32051 255 0 species Synechococcus sp. WH 7803 130 316279 1 species 0 Synechococcus sp. CC9902 1 321327 641 species 0 Synechococcus sp. JA-3-3Ab Synechococcus sp. PCC 6312 0 species 195253 1 98 Synechococcus sp. PCC 73109 species 0 101 1 374982 235 1350461 1 Synechococcus sp. UTEX 2973 species 0 192 1 374981 Synechococcus sp. PCC 7003 species 0 1 1173263 284 species 0 Synechococcus sp. PCC 7502 1 585423 378 Synechococcus sp. KORDI-49 0 species 166314 1 380 Synechococcus sp. WH 8109 0 species 0 species Synechococcus sp. KORDI-52 422 585425 1 species 0 Synechococcus sp. SynAce01 1916956 1 376 195248 1 147 0 species Synechococcus sp. PCC 8807 316278 1 336 species 0 Synechococcus sp. RCC307 species 0 Synechococcus sp. WH 8103 344 1 29410 264 1 1280380 species 0 Synechococcus sp. KORDI-100 Synechococcus sp. PCC 7117 species 0 172 195498 1 species 0 Synechococcus sp. WH 8102 84588 1 360 155 1 32049 Synechococcus sp. PCC 7002 species 0 1827144 1 124 Synechococcus sp. NIES-970 species 0 Synechococcus sp. CC9311 0 species 133 64471 1 420 110662 1 Synechococcus sp. CC9605 species 0 322 1890429 1 0 family genus 0 1 155977 322 322 1 155978 0 species Acaryochloris marina 3 1213 1751 0 family 1751 1218 3 genus 0 species 0 Prochlorococcus marinus 1384 1219 1 0 no rank 2 2627481 367 1501269 1 182 Prochlorococcus sp. MIT 0801 0 species Prochlorococcus sp. MIT 0604 0 species 185 1 1501268 1 Leptolyngbyaceae family 0 18 1270 6 1890438 1252 47251 5 1 Leptolyngbya 5 0 genus 0 species Leptolyngbya boryana 296 1184 1 951 3 2650499 0 no rank 523 1 1080068 0 species Leptolyngbya sp. O-77 128 111781 1 0 species Leptolyngbya sp. PCC 7376 300 1 1752064 Leptolyngbya sp. NIES-3755 species 0 1 2 family 0 Pseudanabaenaceae 188 3 1890436 1 genus 0 4 Pseudanabaena 186 2 1152 no rank 0 1 2593292 182 182 82654 1 Pseudanabaena sp. PCC 7367 species 0 0 family 325 1 2303730 genus 0 325 1 170610 1 1209493 325 0 species Halomicronema hongdechloris 6 order 0 Pleurocapsales 1 52604 5 884 family 0 1 1890500 356 genus 0 356 44474 1 Pleurocapsa minor 0 species 356 54308 1 0 family 2 Dermocarpellaceae 1 3 1890498 522 0 genus 102115 2 520 256 2642663 1 0 no rank Stanieria sp. NIES-3757 0 species 256 1 1807358 0 species Stanieria cyanosphaera 264 1 102116 2 1890505 197 0 order family 0 2 1890528 197 54298 2 197 Chroococcidiopsis 0 genus 2 1 Chroococcidiopsis thermalis 0 species 1 54299 195 4 0 phylum Tenericutes 1 100 544448 23202 1 2799557 571 no rank 0 genus 0 1912503 1 571 no rank 0 2624196 1 571 0 species Candidatus Izimaplasma sp. HR1 1 1541959 571 31969 96 21040 class 0 11 Mollicutes 1 10114 186328 39 1 Entomoplasmatales order 0 2 24 2131 6539 12 0 family Spiroplasmataceae 1 6527 2132 23 1 Spiroplasma 91 genus 0 Spiroplasma litorale species 0 252 1 216942 species 0 Spiroplasma citri 1 2133 290 362 216933 1 Spiroplasma chrysopicola species 0 151 1 2137 species 0 Spiroplasma apis 215 1 47834 species 0 Spiroplasma kunkelii 250 216944 1 Spiroplasma sabaudiense 0 species Spiroplasma mirum 0 species 2144 1 256 0 species Spiroplasma diminutum 216936 1 341 species 0 Spiroplasma corruscae 180 1 216934 233 216946 1 0 species Spiroplasma turonicum 347 1 2145 Spiroplasma taiwanense species 0 484 2637901 2 0 no rank 1 1898044 242 Spiroplasma sp. TU-14 species 0 242 1914410 1 Spiroplasma sp. NBRC 100390 species 0 374 216945 1 Spiroplasma syrphidicola 0 species 0 species Spiroplasma culicicola 474 1 216935 293 1 2136 Spiroplasma monobiae 0 species Spiroplasma clarkii species 0 230 1 2139 Spiroplasma atrichopogonis species 0 277 1114980 1 Spiroplasma floricola 0 species 216937 1 323 362837 1 336 Spiroplasma cantharicola 0 species Spiroplasma eriocheiris 0 species 1 315358 537 0 species Spiroplasma helicoides 231 216938 1 0 family 9 Entomoplasmataceae 1 33925 14 3573 1097 46238 5 1 Entomoplasma genus 0 27 Entomoplasma freundtii 0 species 142 1 74700 Entomoplasma melaleucae species 0 1 81459 329 312 1 215578 Entomoplasma somnilux species 0 species 0 Entomoplasma luminosum 1 214888 287 1 14 genus 0 Mesoplasma 2467 8 46239 species 0 Mesoplasma entomophilum 1 2149 291 1 219745 237 species 0 Mesoplasma tabanidae 179 216427 1 Mesoplasma chauliocola 0 species 1 138853 573 0 species Mesoplasma lactucae Mesoplasma coleopterae 0 species 224 324078 1 Mesoplasma syrphidae 0 species 225999 1 493 Mesoplasma florum species 0 1 2151 456 3185 186329 13 1 3 0 order Acholeplasmatales 3182 12 2146 1 9 family 0 Acholeplasmataceae 1 33 0 genus Acholeplasma 2352 2147 5 species 0 Acholeplasma palmae 38986 1 580 1 2148 365 Acholeplasma laidlawii 0 species Acholeplasma brassicae 0 species 1 61635 515 35623 1 859 species 0 Acholeplasma oculi 33926 6 821 0 genus 15 Candidatus Phytoplasma 1 species group 0 212 1 85630 species 0 Candidatus Phytoplasma mali 37692 1 212 species group 0 85620 3 410 106 1 202462 0 species Maize bushy stunt phytoplasma Onion yellows phytoplasma species 0 1 100379 218 86 229545 1 Aster yellows witches'-broom phytoplasma 0 species 1 85632 184 species group 0 species 0 Candidatus Phytoplasma australiense 184 1 59748 1 Mycoplasmatales 7 0 order 7730 2085 43 7723 42 2092 1 Mycoplasmataceae family 0 24 2129 2 438 genus 0 212 2130 1 Ureaplasma urealyticum 0 species 226 134821 1 0 species Ureaplasma parvum 2067 2767358 12 0 genus species 0 Mycoplasma californicum 123 1 2113 171284 1 217 species 0 Mycoplasma cynos 199 1 2115 Mycoplasma fermentans 0 species 124 1 2107 0 species Mycoplasma pulmonis Mycoplasma pullorum 0 species 100 48003 1 1 2109 52 Mycoplasma synoviae species 0 1 2094 216 0 species Mycoplasma arginini 1 2112 134 Mycoplasma bovigenitalium 0 species Mycoplasma agalactiae species 0 1 2110 215 132 29553 1 Mycoplasma bovirhinis species 0 180 29555 1 0 species Mycoplasma canis 28903 1 375 Mycoplasma bovis 0 species 120 genus 0 Mycoplasma 1 27 2093 5194 169 2096 1 Mycoplasma gallisepticum 0 species species 0 Mycoplasma parvum 111 984991 1 Mycoplasma haemofelis species 0 58 1 29501 335 2683645 1 0 no rank 0 species Mycoplasma sp. (ex Biomphalaria glabrata) 335 1749074 1 67 1 171632 Mycoplasma ovis species 0 species group 0 3 656088 1710 species 0 Mycoplasma capricolum 417 2095 1 species 0 Mycoplasma leachii 354 2105 1 0 species Mycoplasma mycoides 1 2102 939 50052 1 223 Mycoplasma crocodyli species 0 species 0 Mycoplasma hyorhinis 1 2100 115 62 1 2097 0 species Mycoplasma genitalium Mycoplasma hominis species 0 1 2098 347 1 45362 119 species 0 Mycoplasma bovoculi 2128 1 107 0 species Mycoplasma flocculare 312 1 51365 species 0 Mycoplasma yeatsii species 0 Mycoplasma mobile 150 2118 1 0 species Mycoplasma canadense 29554 1 178 7 1 65123 0 species Mycoplasma wenyonii Mycoplasma hyopneumoniae species 0 2099 1 156 species 0 Mycoplasma arthritidis 2111 1 197 86660 1 122 species 0 Mycoplasma dispar 0 species Mycoplasma putrefaciens 115 2123 1 species 0 Mycoplasma pneumoniae 43 1 2104 Mycoplasma penetrans species 0 28227 1 275 Mycoplasma haemocanis species 0 39 136241 1 Mycoplasma suis species 0 1 57372 57 no rank 0 1587 2 713063 1911683 1 920 0 species Tenericutes bacterium MZ-XQ Tenericutes bacterium MO-XQ 0 species 1911684 1 667 2 1859062 269 no rank 0 4 0 genus Thermobaculum 1 2 262406 269 Thermobaculum terrenum 0 species 166501 1 265 1417 6 200930 0 phylum 68337 6 1417 Deferribacteres 1 0 class 1 order 0 5 191393 1416 1 10 0 family Deferribacteraceae 1416 5 191394 1 53572 433 0 genus 433 1 197162 Deferribacter desulfuricans 0 species 0 genus 304 1 2351 species 0 Flexistipes sinusarabici 1 2352 304 0 genus 286 1 545865 286 477976 1 Calditerrivibrio nitroreducens species 0 1 117999 383 0 genus Denitrovibrio acetiphilus species 0 118000 1 383 22 200783 2572 0 phylum 2572 187857 22 1 Aquificae 3 class 0 3 1485951 367 order 0 367 558314 3 1 Desulfurobacteriaceae 1 0 family genus 0 96 171868 1 96 1 228745 species 0 Thermovibrio ammonificans 270 64159 1 0 genus species 0 Desulfurobacterium thermolithotrophum 1 64160 270 18 32069 2202 order 0 201 90150 1 no rank 0 1 412592 201 0 genus 412593 1 201 0 species Thermosulfidibacter takaii Aquificaceae 1 family 0 1 11 64898 1148 1 939 85 genus 0 85 940 1 Hydrogenobacter thermophilus 0 species genus 0 1 2713 101 0 species Aquifex aeolicus 101 1 63363 0 genus 2 75905 182 102 136094 1 species 0 Thermocrinis albus species 0 Thermocrinis ruber 1 75906 80 Hydrogenobaculum 0 genus 8 1 6 168657 779 0 no rank 5 2622382 771 164 547145 1 0 species Hydrogenobaculum sp. SHO 164 547146 1 species 0 Hydrogenobaculum sp. SN 1 547144 164 species 0 Hydrogenobaculum sp. HO Hydrogenobaculum sp. Y04AAS1 0 species 115 1 380749 0 species Hydrogenobaculum sp. 3684 164 547143 1 6 224027 853 1 family 0 Hydrogenothermaceae 1 1 2 genus 0 Persephonella 207 2 182899 309805 1 205 Persephonella marina 0 species 645 212790 3 1 Sulfurihydrogenibium 0 genus 1 467 2619248 1 no rank 0 467 1 436114 0 species Sulfurihydrogenibium sp. YO3AOP1 Sulfurihydrogenibium azorense 0 species 1 309806 177 clade 0 155 2498710 2 155 2 67814 phylum 0 155 2 693071 0 class order 0 693072 2 155 1 family 0 1 Caldisericaceae 155 693073 2 1 693074 154 0 genus Caldisericum exile 0 species 154 1 693075 588 200940 5 phylum 0 0 class 588 5 67799 5 188710 588 order 0 5 188711 588 1 family 0 Thermodesulfobacteriaceae 1 109 444090 1 0 genus 1 1653476 109 Caldimicrobium thiodismutans species 0 194 1 241192 genus 0 species 0 Thermodesulfatator indicus 194 1 171695 genus 0 284 2 1740 203 1295609 1 Thermodesulfobacterium geofontis 0 species Thermodesulfobacterium commune 0 species 81 1 1741 1 Proteobacteria 0 phylum 293 1019037 1224 1962 1 Betaproteobacteria 363 class 0 205961 28216 344 121 0 order Rhodocyclales 1 206389 22 10806 Zoogloeaceae family 0 235 1 2008794 12 7744 134 genus 0 Thauera 1 6 33057 4336 1 96773 606 species 0 Thauera chlorobenzoica 2 2609274 2114 0 no rank 1 2005884 1102 Thauera sp. K11 0 species 85643 1 1012 Thauera sp. MZ1T species 0 Thauera humireducens species 0 821 1 1134435 661 1 59405 species 0 Thauera aromatica 12960 5 3173 Azoarcus 117 0 genus 1 Azoarcus sp. SY39 species 0 595 2067960 1 no rank 0 2629479 2 1760 833 748247 1 0 species Azoarcus sp. KH32C 198107 1 927 Azoarcus sp. CIB species 0 Azoarcus olearius 0 species 418699 1 701 75787 6 2400 33 0 family Rhodocyclaceae 1 1 75788 743 no rank 0 743 1 1898103 Rhodocyclaceae bacterium species 0 146937 2 998 15 0 genus Azospira 1 species 0 Azospira oryzae 146939 1 983 1 6 genus 0 Aromatoleum 626 551759 2 Aromatoleum aromaticum 0 species 620 1 551760 2008795 3 541 11 family 0 Azonexaceae 1 1 Dechloromonas 0 genus 2 530 73029 2 259537 1 528 0 species Dechloromonas aromatica 32003 41 8212 Nitrosomonadales 50 0 order 1 2008790 3 511 0 family 8 Thiobacillaceae 1 503 919 2 1 Thiobacillus 9 genus 0 36861 1 494 0 species Thiobacillus denitrificans 1537 2008793 5 1 Sterolibacteriaceae 0 family 27 Sulfuritalea 7 genus 0 1 2 1054211 806 0 species Sulfuritalea hydrogenivorans 1 748811 799 15 0 genus Methyloversatilis 1 378210 2 704 0 no rank 689 2639971 1 689 1 1842540 0 species Methyloversatilis sp. RAC08 2196 206379 12 1 Nitrosomonadaceae 0 family 12 4 35798 888 Nitrosospira 5 0 genus 1 271 1231 1 species 0 Nitrosospira multiformis 35799 1 379 Nitrosospira briensis 0 species 1 1288494 233 species 0 Nitrosospira lacus 1 Nitrosomonas genus 0 1 1296 914 7 0 species Nitrosomonas eutropha 196 1 916 44574 1 201 Nitrosomonas communis 0 species no rank 0 375 2 2609265 154 1 153948 0 species Nitrosomonas sp. AL212 221 261292 1 0 species Nitrosomonas sp. Is79A3 315 1 915 Nitrosomonas europaea species 0 44577 1 208 Nitrosomonas ureae species 0 950 2772226 4 0 family Sulfuriferula 9 genus 0 1 1778653 2 583 no rank 0 574 2637784 1 574 1985873 1 0 species Sulfuriferula sp. AH1 2 935200 367 genus 0 9 Sulfuricella 1 358 1 649841 species 0 Sulfuricella denitrificans 1 Methylophilaceae family 0 12 1879 11 32011 262 1679002 3 1 0 genus 3 Candidatus Methylopumilus Candidatus Methylopumilus turicensis 0 species 1581680 1 172 1 1581557 87 0 species Candidatus Methylopumilus planktonicus genus 0 1 16 313 0 no rank 313 1 2630143 species 0 Methylophilus sp. TWE2 313 1 1662285 1 13 genus 0 Methylovorus 637 3 81682 338 266009 1 Methylovorus glucosotrophus species 0 no rank 0 286 2634027 1 1 887061 286 0 species Methylovorus sp. MP688 298 404 1 genus 0 Methylobacillus flagellatus species 0 298 1 405 0 genus 357 359407 2 1 359408 174 Methylotenera mobilis species 0 Methylotenera versatilis 0 species 183 1 1055487 5 90627 1089 Gallionellaceae 17 0 family 1 1 3 0 genus Gallionella 402 96 2 399 1 370405 species 0 Gallionella capsiferriformans 314343 2 670 Sideroxydans 4 0 genus 1 666 63745 1 Sideroxydans lithotrophicus species 0 16777 206351 36 1 212 0 order Neisseriales 7631 13 1499392 1 91 0 family Chromobacteriaceae 854 2 187 1 6 0 genus Aquaspirillum 0 no rank 1 2620219 848 1938604 1 848 Aquaspirillum sp. LM1 0 species 12 0 genus Laribacter 1 168470 2 907 1 168471 895 Laribacter hongkongensis species 0 2 885864 742 Jeongeupia 8 0 genus 1 734 1 2619593 0 no rank 734 1906741 1 species 0 Jeongeupia sp. USM3 90153 4 3761 no rank 0 3761 535 4 1 Chromobacterium genus 0 50 0 species Chromobacterium violaceum 1307 536 1 no rank 0 1 2641838 906 0 species Chromobacterium sp. ATCC 53434 906 2059672 1 1498 1 1108595 Chromobacterium vaccinii species 0 Pseudogulbenkiania genus 0 19 1 568394 2 1276 no rank 0 1257 2642558 1 1257 1 748280 Pseudogulbenkiania sp. NH8B species 0 Neisseriaceae family 0 116 1 481 22 8934 12 482 6794 194 genus 0 Neisseria 1 1 28091 348 Neisseria weaveri 0 species 1 490 457 Neisseria sicca 0 species 1 487 1439 0 species Neisseria meningitidis no rank 0 2 2623750 1126 Neisseria sp. 10022 0 species 1 1853276 331 Neisseria sp. KEM232 species 0 655307 1 795 Neisseria gonorrhoeae 0 species 575 485 1 Neisseria lactamica species 0 1 486 690 392 1 495 Neisseria elongata species 0 1 1853278 647 Neisseria sp. 10023 species 0 425 488 1 species 0 Neisseria mucosa 1 326523 501 species 0 Neisseria zoodegmatis 717 3 59 1 Vitreoscilla 0 genus 11 159 2627922 1 no rank 0 1 96942 159 Vitreoscilla sp. C1 0 species Vitreoscilla filiformis species 0 63 1 547 321 1 1193515 0 genus 1196083 1 321 Snodgrassella alvi species 0 Eikenella 4 genus 0 1 538 2 565 Eikenella corrodens species 0 539 1 561 1 genus 0 1 Simonsiella 242 2 71 1 72 241 Simonsiella muelleri species 0 1 421605 179 0 no rank Neisseriaceae bacterium DSM 100970 species 0 179 2052837 1 no rank 0 822 33809 2 87 543913 1 beta proteobacterium CB species 0 735 1 1904640 species 0 Betaproteobacteria bacterium GR16-43 Burkholderiales 1618 order 0 1 80840 231 167906 1 family 0 214 Oxalobacteraceae 19139 29 75682 7 29580 4513 Janthinobacterium 53 genus 0 1 4 2610881 2603 no rank 0 0 species Janthinobacterium sp. LM6 815 1 1938606 390 1 375286 0 species Janthinobacterium sp. Marseille 296 1 1236179 species 0 Janthinobacterium sp. B9-8 1102 1644131 1 Janthinobacterium sp. 1_2014MBL_MicDiv species 0 885 1 55508 species 0 Janthinobacterium agaricidamnosum 972 368607 1 Janthinobacterium svalbardensis species 0 Oxalobacter genus 0 3 1 846 2 534 0 species Oxalobacter formigenes 1 847 531 303379 3 544 Herminiimonas 3 genus 0 1 344 1 204773 species 0 Herminiimonas arsenicoxydans 1809410 1 197 0 species Herminiimonas arsenitoxidans Collimonas 64 0 genus 1 202907 4 2764 984 1 279058 Collimonas arenae 0 species Collimonas fungivorans species 0 1 158899 741 0 species Collimonas pratensis 1 279113 975 0 genus 120 Herbaspirillum 1 6 963 5064 Herbaspirillum rubrisubalbicans 0 species 80842 1 946 532 1 2624150 no rank 0 Herbaspirillum sp. meg3 0 species 532 2025949 1 92645 1 1246 species 0 Herbaspirillum frisingense species 0 Herbaspirillum hiltneri 813 1 341045 Herbaspirillum seropedicae 0 species 1407 1 964 5506 6 149698 1 genus 0 117 Massilia 0 species Massilia putida 1 1141883 1077 species 0 Massilia sp. B2 2045208 1 899 2609279 2 2277 no rank 0 Massilia sp. WG5 species 0 871 1 1707785 1406 1 1678028 Massilia sp. NR 4-1 0 species species 0 Massilia sp. ZMN-3 1136 2072590 1 17 224471 9613 0 no rank Paucibacter genus 0 24 1 318147 2 878 854 2642959 1 no rank 0 species 0 Paucibacter sp. KCTC 42545 1 1768242 854 2 93681 1119 22 genus 0 Roseateles 1 1097 1 76731 Roseateles depolymerans 0 species 2 212743 1154 Rhizobacter genus 0 66 1 946333 1 1088 Rhizobacter gummiphilus species 0 28 0 genus Thiomonas 1 32012 2 976 0 species Thiomonas intermedia 948 1 926 1081 2 65047 1 88 genus 0 Mitsuaria 0 no rank 2648776 1 993 993 1 1658665 species 0 Mitsuaria sp. 7 Leptothrix 38 0 genus 1 2 88 1096 Leptothrix cholodnii 0 species 1058 34029 1 species 0 [Polyangium] brachysporum 981 413882 1 927 2 316612 1 0 genus 28 Methylibium Methylibium petroleiphilum species 0 899 1 105560 1401 28067 2 1 31 genus 0 Rubrivivax 1 28068 1370 0 species Rubrivivax gelatinosus 40 506 31108 226 0 family Alcaligenaceae 1 genus 0 200 90243 1 200 1 90245 species 0 Oligella urethralis 6 222 11575 Achromobacter 363 genus 0 1 Achromobacter denitrificans species 0 2455 1 32002 85698 1 4798 Achromobacter xylosoxidans species 0 1017 2626865 1 no rank 0 Achromobacter sp. AONIH1 species 0 1758194 1 1017 species 0 Achromobacter spanius 217203 1 1928 species 0 Achromobacter insolitus 1 217204 1014 2 1921582 970 18 0 genus Orrella 1 species 0 Orrella dioscoreae 1851544 1 952 249 1472344 1 genus 0 1 1472345 249 Basilea psittacipulmonis 0 species 0 genus 712 290425 2 310575 1 263 Advenella kashmirensis 0 species Advenella mimigardefordensis species 0 1 302406 449 Taylorella 0 genus 1 1 29574 3 317 224 1 84590 Taylorella asinigenitalis 0 species Taylorella equigenitalis species 0 92 1 29575 1 Alcaligenes 9 0 genus 954 507 2 1 511 945 Alcaligenes faecalis 0 species 14162 17 517 1 genus 0 438 Bordetella 1201 463025 1 Bordetella bronchialis 0 species 0 species Bordetella holmesii 376 35814 1 1 520 749 species 0 Bordetella pertussis 123899 1 872 Bordetella trematum 0 species Bordetella genomosp. 8 0 species 1416806 1 782 1 2630031 684 0 no rank 1697043 1 684 species 0 Bordetella sp. H567 825 1416803 1 Bordetella genomosp. 9 species 0 Bordetella genomosp. 13 species 0 885 463040 1 1721 1 518 Bordetella bronchiseptica 0 species Bordetella flabilis species 0 463014 1 746 0 species Bordetella petrii 1 94624 734 1331258 1 863 species 0 Bordetella pseudohinzii Bordetella hinzii species 0 1 103855 952 Bordetella parapertussis 0 species 833 519 1 1 463024 964 Bordetella genomosp. 6 0 species 537 1 521 0 species Bordetella avium 1100891 1 167 genus 0 167 643674 1 Paenalcaligenes hominis species 0 359336 2 1109 Castellaniella 61 0 genus 1 Castellaniella defragrans species 0 1 75697 1048 305976 2 467 Pusillimonas genus 0 1 1 1 2640016 466 0 no rank Pusillimonas sp. T7-7 species 0 1 1007105 466 65095 119060 84 1 Burkholderiaceae 398 0 family 41 32008 33796 Burkholderia 0 genus 1614 1 species 0 Burkholderia plantarii 1016 41899 1 no rank 0 11 2613784 5914 Burkholderia sp. Bp7605 0 species 1 1740163 724 species 0 Burkholderia sp. PAMC 28687 393 1795874 1 1 640510 414 0 species Burkholderia sp. CCGE1001 549 758796 1 species 0 Burkholderia sp. RPE67 Burkholderia sp. YI23 0 species 1097668 1 560 531 1 1678678 0 species Burkholderia sp. HB1 Burkholderia sp. PAMC 26561 0 species 497 1795043 1 species 0 Burkholderia sp. 2002721687 530 1468409 1 1 640512 606 Burkholderia sp. CCGE1003 0 species 617 416344 1 Burkholderia sp. KJ006 0 species species 0 Burkholderia sp. Bp5365 1740162 1 493 Burkholderia glumae species 0 337 1 1662 0 species group 5225 7 111527 Burkholderia mallei species 0 377 1 13373 1186 57975 1 Burkholderia thailandensis species 0 Burkholderia oklahomensis species 0 583 1 342113 Burkholderia sp. MSMB0266 species 0 1 1637837 579 441 1 1637831 Burkholderia sp. MSMB617WGS species 0 Burkholderia pseudomallei 0 species 1286 28450 1 Burkholderia sp. MSMB0852 species 0 1637841 1 773 0 species Burkholderia gladioli 28095 1 1613 0 species group 16752 19 87882 Burkholderia stagnalis species 0 1 1503054 405 394 1 60550 0 species Burkholderia pyrrocinia species 0 Burkholderia latens 488446 1 569 0 species Burkholderia territorii 349 1503055 1 1 1207504 574 Burkholderia pseudomultivorans species 0 0 species Burkholderia lata 1 482957 665 species 0 Burkholderia ambifaria 152480 1 711 488732 1 362 0 species Burkholderia diffusa 2983 1 292 species 0 Burkholderia cepacia species 0 Burkholderia dolosa 466 152500 1 884 1 95485 Burkholderia stabilis 0 species 465 265293 1 [Pseudomonas] mesoacidophila 0 species Burkholderia vietnamiensis species 0 60552 1 908 Burkholderia multivorans species 0 1154 1 87883 species 0 Burkholderia contaminans 488447 1 487 1 488729 398 species 0 Burkholderia metallica 488731 1 570 Burkholderia seminalis 0 species 0 species Burkholderia ubonensis 1 101571 1672 95486 1 2736 Burkholderia cenocepacia species 0 6457 48736 5 1 Ralstonia genus 0 137 1404 329 1 Ralstonia pickettii species 0 species 0 Ralstonia insidiosa 190721 1 887 1 105219 1004 0 species Ralstonia mannitolilytica Ralstonia solanacearum species 0 305 1 3025 Cupriavidus genus 0 301 1 9 106589 9478 1 248026 706 Cupriavidus pinatubonensis species 0 0 no rank 2 2640874 2463 Cupriavidus sp. USMAHM13 0 species 1202 1 1389192 1 876364 1261 species 0 Cupriavidus sp. USMAA2-4 1 106590 1677 species 0 Cupriavidus necator 1 82541 778 species 0 Cupriavidus gilardii 0 species Cupriavidus basilensis 1074 68895 1 Cupriavidus sp. USMAA1020 0 species 1272 367825 1 119219 1 1207 species 0 Cupriavidus metallidurans 1 Polynucleobacter 0 genus 2 464 44013 4 Polynucleobacter necessarius species 0 144 576610 1 576611 1 136 Polynucleobacter asymbioticus 0 species 182 1 1835254 species 0 Polynucleobacter duraquae 628 1827195 1 genus 0 1 758793 628 species 0 Burkholderia sp. RPE64 genus 0 1 2571159 417 Paraburkholderia rhizoxinica species 0 417 1 412963 12 1822464 8260 Paraburkholderia genus 0 149 1 Paraburkholderia aromaticivorans species 0 2026199 1 831 Paraburkholderia phytofirmans species 0 1 261302 639 species 0 Paraburkholderia phymatum 689 1 148447 Paraburkholderia caribensis species 0 75105 1 817 134537 1 702 species 0 Paraburkholderia fungorum 824 1 169430 Paraburkholderia hospita 0 species 577 2615204 1 no rank 0 1926494 1 577 Paraburkholderia sp. SOS3 0 species 720 1 311230 Paraburkholderia terrae 0 species 1120 1 948107 Paraburkholderia sprentiae 0 species 1 36873 717 Paraburkholderia xenovorans 0 species 1 252970 475 species 0 Paraburkholderia phenoliruptrix 5197 10 93217 1 Pandoraea 132 0 genus 445709 1 619 species 0 Pandoraea thiooxydans 656178 1 715 0 species Pandoraea vervacti 0 species Pandoraea oxalativorans 573737 1 643 93222 1 451 Pandoraea sputorum 0 species 0 species Pandoraea norimbergensis 559 1 93219 0 species Pandoraea apista 1 93218 514 Pandoraea pulmonicola 0 species 531 93221 1 0 species Pandoraea faecigallinarum 656179 1 463 Pandoraea pnomenusa 0 species 570 1 93220 1145 80841 2 0 no rank 1 1834205 578 0 species Burkholderiales bacterium YL45 1 1469502 567 Burkholderiales bacterium GJ-E10 0 species Comamonadaceae 0 family 664 1 80864 58 40188 1 0 genus 4 Candidatus Symbiobacter 415 2 1436289 Candidatus Symbiobacter mobilis 0 species 411 1 1436290 797 2 1649468 1 Melaminivora 21 0 genus no rank 0 2641902 1 776 Melaminivora sp. SC2-9 species 0 776 1 2109913 0 genus 64 Hydrogenophaga 1 47420 4 2783 0 no rank 2091 2 2610897 1301 1 795665 Hydrogenophaga sp. PBC species 0 species 0 Hydrogenophaga sp. RAC07 1 1842537 790 628 1763535 1 Hydrogenophaga crassostreae species 0 Rhodoferax genus 0 46 1 28065 5 2394 Rhodoferax saidenbachensis 0 species 1484693 1 546 Rhodoferax antarcticus species 0 1 81479 488 0 species Rhodoferax ferrireducens 421 1 192843 Rhodoferax koreense 0 species 1842727 1 893 genus 0 3 Limnohabitans 1 665874 3 660 0 no rank 2626134 2 657 0 species Limnohabitans sp. 63ED37-2 1678128 1 416 1678129 1 241 0 species Limnohabitans sp. 103DPR2 283 4 3645 26 0 genus Comamonas 1 Comamonas serinivorans 0 species 1082851 1 945 1761 1 285 Comamonas testosteroni species 0 913 225992 1 Comamonas kerstersii 0 species 572 352450 2 1 Simplicispira 7 genus 0 Simplicispira sp. SC1-8 0 species 2109915 1 565 941 2 238749 1 Diaphorobacter 13 0 genus 1546149 1 928 Diaphorobacter polyhydroxybutyrativorans species 0 7346 9 12916 1 236 genus 0 Acidovorax 4 2684926 3595 no rank 0 1019 1 1842533 Acidovorax sp. RAC01 0 species 1858609 1 671 0 species Acidovorax sp. T1 1 232721 855 Acidovorax sp. JS42 species 0 0 species Acidovorax sp. KKS102 1050 358220 1 0 species Acidovorax sp. NA3 553814 1 745 1 721785 812 Acidovorax ebreus species 0 1019 80869 1 Acidovorax citrulli 0 species 939 1 80867 species 0 Acidovorax avenae Delftia 116 0 genus 1 80865 5 5355 80866 1 1339 Delftia acidovorans 0 species 180282 1 1291 species 0 Delftia tsuruhatensis no rank 0 2 2613839 2609 Delftia sp. Cs1-4 species 0 742013 1 1367 1 1920191 1242 Delftia sp. HK171 species 0 0 genus 1 364316 696 species 0 Verminephrobacter eiseniae 364317 1 696 Variovorax genus 0 137 1 34072 5 5826 no rank 0 1867 663243 2 1 2126319 1230 species 0 Variovorax sp. PMC12 0 species Variovorax sp. PAMC 28711 637 1795631 1 1182 1 436515 species 0 Variovorax boronicumulans 1 34073 2640 Variovorax paradoxus species 0 1831 2 174951 1 genus 0 7 Ramlibacter 1 94132 1824 0 species Ramlibacter tataouinensis 1 10 genus 0 Alicycliphilus 1265 2 201096 0 species Alicycliphilus denitrificans 1255 1 179636 930 2 2490452 genus 0 species 0 Comamonadaceae bacterium A1 1458425 1 480 species 0 Comamonadaceae bacterium B1 1458426 1 450 1478 3 219181 1 genus 0 13 Ottowia no rank 0 2645081 1 622 Ottowia sp. oral taxon 894 0 species 1 1658672 622 1 2109914 843 Ottowia sp. KADR8-3 0 species genus 0 1 2678886 920 920 1 2116657 Melaminivora sp. SC2-7 0 species 52972 3 1670 Polaromonas 30 0 genus 1 860 216465 1 Polaromonas naphthalenivorans 0 species 780 2638319 1 0 no rank 780 1 296591 species 0 Polaromonas sp. JS666 0 no rank 119066 11 1075 0 genus 21 Candidatus Accumulibacter 1 327159 2 571 species 0 Candidatus Accumulibacter phosphatis 1 327160 550 1 1381133 65 genus 0 Candidatus Profftella armatura 0 species 65 669502 1 genus 0 30 189384 1 1 189385 30 Candidatus Tremblaya princeps 0 species 54 1 1301080 genus 0 54 1160784 1 Candidatus Nasuia deltocephalinicola 0 species 1 10 genus 0 Kinetoplastibacterium 355 33055 6 species 0 Candidatus Kinetoplastibacterium oncopeltii 58 1 994696 species 0 Candidatus Kinetoplastibacterium galatii 50 1 994695 Candidatus Kinetoplastibacterium crithidii 0 species 33056 1 73 0 species Candidatus Kinetoplastibacterium desouzaii 1 994692 73 91 233181 1 0 species Kinetoplastibacterium blastocrithidii 1 Acidithiobacillia 0 class 2 1264 1807140 7 1 Acidithiobacillales 32 0 order 1262 225057 6 4 family 0 Acidithiobacillaceae 1 225058 5 1230 119977 4 1226 Acidithiobacillus genus 0 13 1 species 0 Acidithiobacillus ferrivorans 371 1 160808 species 0 Acidithiobacillus ferrooxidans 412 1 920 Acidithiobacillus caldus 0 species 430 33059 1 921 6 580370 1 Zetaproteobacteria 0 class 4 5 580371 917 order 0 6 Mariprofundales 1 Mariprofundaceae 0 family 2 1 4 580372 911 377315 3 909 1 genus 0 Mariprofundus 1 Mariprofundus ferrinatatus species 0 1 1921087 505 403 1 1921086 Mariprofundus aestuarium 0 species Gammaproteobacteria 724 0 class 1 855 1236 475162 order 0 27 Cellvibrionales 1 1706369 25 5392 584 4 1706375 1 Spongiibacteraceae 0 family 4 1 630749 150 genus 0 1 2631504 150 no rank 0 species 0 Spongiibacter sp. IMCC21906 1 1620392 150 1 1434050 162 genus 0 1470434 1 162 0 species Zhongshania aliphaticivorans 268 1084558 1 0 genus Oceanicoccus sagamiensis species 0 716816 1 268 1 9 family 0 Halieaceae 685 1706372 4 1 Halioglobus 0 genus 22 676 3 1217416 species 0 Halioglobus japonicus 286 1 930805 368 1 930806 Halioglobus pacificus 0 species 4 0 family Microbulbiferaceae 1 1706373 5 1356 Microbulbifer genus 0 12 1 48073 4 1352 407 252514 1 Microbulbifer thermotolerans species 0 315 260552 1 0 species Microbulbifer agarilyticus species 0 Microbulbifer aggregans 1 1769779 618 2740 1706371 11 1 0 family 5 Cellvibrionaceae 1532 10 4 1 15 0 genus Cellvibrio 1000 2624793 2 0 no rank 0 species Cellvibrio sp. PSBB006 1 1987723 624 1 1945512 376 Cellvibrio sp. PSBB023 species 0 0 species Cellvibrio japonicus 1 155077 517 369 2036021 1 0 genus Agarilytica rhodophyticola species 0 369 1 1737490 genus 0 3 Teredinibacter 1 2 2425 199 1 2426 196 Teredinibacter turnerae species 0 268 1 316625 0 genus 268 86304 1 species 0 Saccharophagus degradans 447467 2 367 Simiduia genus 0 11 1 Simiduia agarivorans species 0 356 1 447471 0 order 1 135615 130 1 868 130 family 0 0 genus 869 1 130 0 species Dichelobacter nodosus 130 1 870 3609 118969 19 1 5 0 order Legionellales family 0 3 118968 512 no rank 0 134284 1 51 1 1592897 51 Coxiella-like endosymbiont 0 species genus 0 461 776 2 2676648 1 68 no rank 0 68 1 325775 Coxiella endosymbiont of Amblyomma americanum species 0 777 1 393 Coxiella burnetii 0 species 3092 15 444 1 Legionellaceae family 0 1 2937 12 445 1 0 genus 1 Legionella species 0 Legionella oakridgensis 1 29423 199 163 1 28087 0 species Legionella sainthelensi Legionella fallonii species 0 181 96230 1 66969 1 201 species 0 Legionella waltersii species 0 Legionella pneumophila 1022 446 1 201 1 452 Legionella spiritensis 0 species 45067 1 103 Legionella lansingensis 0 species 55 1 2005262 0 species Legionella endosymbiont of Polyplax serrata Legionella hackeliae 0 species 449 1 243 0 species Legionella longbeachae 233 1 450 Legionella clemsonensis 0 species 1 1867846 335 Tatlockia 3 0 genus 1 2 465 154 451 1 151 species 0 Tatlockia micdadei 12 135618 3907 0 order 11 Methylococcales 1 66 0 family Methylococcaceae 1 403 11 3896 5 416 2509 Methylomonas 34 genus 0 1 no rank 0 1 2608980 730 1727196 1 730 0 species Methylomonas sp. DH-1 species 0 Methylomonas denitrificans 574 1538553 1 Methylomonas koyamae species 0 1 702114 555 1 421 616 Methylomonas methanica 0 species 39773 1 428 genus 0 species 0 Methylomicrobium alcaliphilum 271065 1 428 1 Methylococcus 6 0 genus 536 2 413 species 0 Methylococcus capsulatus 414 1 530 Methylovulum 1 genus 0 1 2 762296 357 species 0 Methylovulum psychrotolerans 1 1704499 356 1 Immundisolibacterales 0 order 14 809 1934945 4 795 3 1934946 1 family 0 19 Immundisolibacteraceae 1 genus 0 3 Immundisolibacter 776 1934947 2 Immundisolibacter cernigliae species 0 1 1810504 773 0 no rank 33811 2 1229 gamma proteobacterium HdN1 0 species 427 1 83406 endosymbiont of unidentified scaly snail isolate Monju species 0 802 1248727 1 0 order 542 Enterobacterales 1 91347 240 216907 20 1903410 9929 Pectobacteriaceae 32 0 family 1 5 84565 1256 genus 0 16 Sodalis 1 species 0 Candidatus Sodalis pierantonius 1486991 1 345 Sodalis endosymbiont of Henestaris halophilus species 0 1 1929246 48 1 1239307 500 0 species Sodalis praecaptivus Sodalis glossinidius 0 species 1 63612 347 204037 6 4334 Dickeya 94 genus 0 1 1778540 1 702 species 0 Dickeya fangzhongdai 0 species Dickeya solani 1395 1 1089444 925 204042 1 Dickeya zeae 0 species Dickeya dadantii species 0 204038 1 598 Dickeya dianthicola species 0 1 204039 620 1 Pectobacterium 100 0 genus 3833 6 122277 species 0 Pectobacterium carotovorum 1712 554 1 species 0 Pectobacterium polaris 2042057 1 652 1 55208 416 0 species Pectobacterium wasabiae 0 species Pectobacterium parmentieri 1905730 1 491 0 species Pectobacterium atrosepticum 462 29471 1 474 2 71655 1 genus 0 2 Brenneria 0 species Brenneria goodwinii 472 1109412 1 no rank 0 2 451511 798 32 0 genus Plesiomonas 1 702 2 798 species 0 Plesiomonas shigelloides 766 1 703 1 family 0 5 Hafniaceae 5819 1903412 14 8 635 4542 genus 0 219 Edwardsiella 1 species 0 Edwardsiella anguillarum 506 1821960 1 0 species Edwardsiella tarda 636 1 970 0 no rank 2676541 2 1224 species 0 Edwardsiella sp. LADL05-105 501 1 1650654 723 1578828 1 Edwardsiella sp. EA181011 species 0 67780 1 591 Edwardsiella ictaluri 0 species Edwardsiella hoshinae 0 species 450 1 93378 582 1 1263550 species 0 Edwardsiella piscicida Hafnia 0 genus 13 1 568 3 1031 no rank 0 1 2621980 249 Hafnia sp. CBA7124 0 species 1 1848580 249 569 1 769 0 species Hafnia alvei 241 82982 2 1 Obesumbacterium 4 genus 0 237 82983 1 Obesumbacterium proteus species 0 family 0 393 2 1903416 2 82984 393 1 genus 0 Pragia 1 1 82985 392 species 0 Pragia fontium 1 Enterobacteriaceae 0 family 1750 155546 115 543 1 genus 0 1 Shimwellia 604 2 1335483 563 1 603 Shimwellia blattae species 0 1 579 433 0 genus Kluyvera intermedia species 0 433 61648 1 0 no rank 16 191675 1337 16 84563 1337 clade 0 434 7 84564 0 clade 0 genus 1 Candidatus Blochmannia 1 203804 7 434 Candidatus Blochmannia floridanus 0 species 77 1 203907 0 no rank 711328 2 137 1 1505596 79 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 0 0 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 58 1 1505597 species 0 Candidatus Blochmannia vafer 1 251535 53 Candidatus Blochmannia pennsylvanicus 0 species 101534 1 100 species 0 Candidatus Blochmannia chromaiodes 66 1 251542 genus 0 1682492 1 82 species 0 Candidatus Tachikawaea gelatinosa 82 1410383 1 genus 0 1906659 1 52 52 1 1778263 0 species Candidatus Hoaglandella endobia 1 199891 41 clade 0 41 1835721 1 species 0 secondary endosymbiont of Trabutina mannipara 38 1906660 1 genus 0 1778264 1 38 Candidatus Mikella endobia 0 species 146507 3 269 0 clade 99 1199245 1 secondary endosymbiont of Ctenarytaina eucalypti 0 species genus 0 568987 1 108 108 138072 1 Candidatus Hamiltonella defensa 0 species 62 134287 1 secondary endosymbiont of Heteropsylla cubana species 0 0 genus 245 1906657 1 0 species Candidatus Doolittlea endobia 1778262 1 245 0 genus 176 1906661 1 Candidatus Gullanella endobia 0 species 176 1070130 1 genus 0 8 Cedecea 1 158483 2 1781 Cedecea neteri 0 species 1773 158822 1 2840 36866 5 0 no rank 674 2066051 1 0 species Enterobacteriaceae bacterium ENNIH1 514 1 693444 species 0 Enterobacteriaceae bacterium strain FGI 57 Enterobacteriaceae bacterium ENNIH2 0 species 1 1920109 558 Plautia stali symbiont species 0 574 1 891974 Enterobacteriaceae bacterium ENNIH3 species 0 1920128 1 520 1 Shigella 0 genus 300 11483 4 620 0 species Shigella flexneri 1 623 2448 1 2629414 5640 0 no rank 5640 1813821 1 0 species Shigella sp. PAMC 28760 1 622 3095 0 species Shigella dysenteriae 1 0 genus 111 Leclercia 1736 4 83654 474 1 83655 0 species Leclercia adecarboxylata 0 no rank 2 2627398 1151 1 1920114 678 Leclercia sp. LSNIH1 species 0 Leclercia sp. LSNIH3 0 species 473 1920116 1 14 genus 0 Pluralibacter 1 1330546 3 1888 747 1334193 1 species 0 [Enterobacter] lignolyticus Pluralibacter gergoviae species 0 1 61647 1127 2626 5 1330547 1 genus 0 26 Kosakonia Kosakonia radicincitans 0 species 804 1 283686 Kosakonia cowanii 0 species 1 208223 838 Kosakonia sacchari species 0 1158459 1 521 1 497725 437 species 0 Kosakonia oryzae 15990 14 544 1 Citrobacter 289 genus 0 0 species group 7 1344959 11695 Citrobacter freundii complex sp. CFNIH3 0 species 738 1 2077147 491 2066049 1 Citrobacter freundii complex sp. CFNIH2 species 0 6245 1 546 Citrobacter freundii 0 species 507 1 2077148 Citrobacter freundii complex sp. CFNIH4 0 species Citrobacter freundii complex sp. CFNIH9 0 species 1970 1 2077149 species 0 Citrobacter werkmanii 1 67827 747 997 57706 1 0 species Citrobacter braakii Citrobacter amalonaticus 0 species 35703 1 1290 0 no rank 1155 2 2644389 486 1 1702170 species 0 Citrobacter sp. FDAARGOS_156 species 0 Citrobacter sp. CFNIH10 669 1 1920110 451 67824 1 Citrobacter farmeri 0 species 67825 1 495 species 0 Citrobacter rodentium 615 545 1 species 0 Citrobacter koseri Enterobacter 806 0 genus 1 22 547 15564 3636 2608935 9 no rank 0 701 1914861 1 Enterobacter sp. SA187 0 species 397 1 2051905 species 0 Enterobacter sp. CRENT-193 0 species Enterobacter sp. Crenshaw 1 1977566 253 424 1 399742 0 species Enterobacter sp. 638 Enterobacter sp. E20 species 0 240 1560339 1 Enterobacter sp. ODB01 species 0 1 1827481 367 526 1166130 1 Enterobacter sp. R4-368 0 species species 0 Enterobacter sp. FY-07 500 1 1692238 228 1 1868135 Enterobacter sp. HK169 species 0 11122 354276 12 0 species group species 0 Enterobacter ludwigii 414 1 299767 Enterobacter hormaechei species 0 1551 1 3 158836 2361 452 1812934 1 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 0 Enterobacter xiangfangensis 0 subspecies 1296536 1 358 4652 1 550 0 species Enterobacter cloacae 69218 1 410 Enterobacter cancerogenus 0 species species 0 Enterobacter kobei 453 208224 1 61645 1 1409 species 0 Enterobacter asburiae Enterobacter cloacae complex 'Hoffmann cluster IV' species 0 1812935 1 348 0 no rank 2757714 3 1075 Enterobacter cloacae complex sp. ECNIH7 species 0 1915310 1 261 species 0 Enterobacter cloacae complex bacterium 2027919 1 283 2077137 1 531 species 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 genus 0 409304 1 104 Candidatus Ishikawaella capsulata species 0 104 1 168169 16 0 genus Lelliottia 1 4 1330545 2133 69220 1 562 species 0 Lelliottia nimipressuralis 0 species Lelliottia jeotgali 519 1907578 1 1036 61646 1 Lelliottia amnigena species 0 0 genus 1 1048757 43 species 0 Candidatus Moranella endobia 1 1048758 43 9342 590 3 1 genus 0 20 Salmonella 458 1 54736 Salmonella bongori 0 species Salmonella enterica 0 species 28901 1 8864 genus 0 112 1 401618 Candidatus Riesia pediculicola 0 species 112 401619 1 10 570 16734 Klebsiella 557 genus 0 1 0 no rank 2 2608929 1505 Klebsiella sp. M5al 0 species 1934254 1 800 705 1905288 1 Klebsiella sp. LTGPAF-6F 0 species 548 1 1502 Klebsiella aerogenes species 0 0 species Klebsiella variicola 1334 244366 1 Klebsiella quasipneumoniae 0 species 1 1463165 743 6264 573 1 Klebsiella pneumoniae 0 species Klebsiella michiganensis 0 species 1134687 1 1465 Klebsiella quasivariicola 0 species 1 2026240 732 2632 571 1 0 species Klebsiella oxytoca 1 0 genus 25 Raoultella 2095 3 160674 Raoultella planticola 0 species 575 1 555 species 0 Raoultella ornithinolytica 1515 1 54291 3898 413496 8 1 genus 0 57 Cronobacter 797 1 28141 Cronobacter sakazakii 0 species 0 species Cronobacter condimenti 423 1163710 1 609 535744 1 Cronobacter universalis 0 species 0 species Cronobacter dublinensis 413497 1 531 410 413503 1 Cronobacter malonaticus 0 species species 0 Cronobacter muytjensii 707 1 413501 species 0 Cronobacter turicensis 364 413502 1 1 Escherichia 0 genus 198 63053 5 561 Escherichia fergusonii species 0 564 1 1767 species 0 Escherichia albertii 1 208962 2852 1499973 1 754 species 0 Escherichia marmotae 562 1 57482 species 0 Escherichia coli 26 1903409 12638 Erwiniaceae 30 0 family 1 410 2 82986 1 Tatumella 19 genus 0 Tatumella citrea 0 species 391 1 53336 1 Pantoea 0 genus 848 6924 11 53335 Pantoea ananatis species 0 1 553 552 Pantoea alhagi 0 species 1891675 1 418 Candidatus Pantoea carbekii 0 species 1235990 1 115 66269 1 402 species 0 Pantoea stewartii 1076550 1 451 0 species Pantoea rwandensis Pantoea vagans 0 species 470934 1 1136 1 1654067 976 species group 0 976 549 1 0 species Pantoea agglomerans 2630326 3 2026 no rank 0 1 1484157 534 species 0 Pantoea sp. PSNIH2 1 1484158 633 species 0 Pantoea sp. PSNIH1 Pantoea sp. At-9b species 0 592316 1 859 1 51228 150 0 genus Wigglesworthia glossinidia 0 species 150 51229 1 1 Erwinia 0 genus 156 3022 8 551 552 1 288 Erwinia amylovora 0 species 68 1 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae species 0 species 0 Erwinia pyrifoliae 329 1 79967 362 1 2622719 no rank 0 Erwinia sp. Ejp617 species 0 362 1 215689 1619313 1 592 Erwinia gerundensis 0 species Erwinia tasmaniensis 0 species 470 338565 1 757 1 182337 Erwinia billingiae species 0 32199 1 889 genus 0 Buchnera aphidicola 0 species 1 9 889 2 2100764 1213 genus 0 Pantoea calida 0 species 1 665913 586 Pantoea gaviniae 0 species 627 1 665914 1 65 0 family Morganellaceae 6835 1903414 21 4 29487 1020 Photorhabdus genus 0 14 1 species 0 Photorhabdus luminescens 397 1 29488 1 291112 370 0 species Photorhabdus asymbiotica Photorhabdus temperata species 0 574560 1 239 1 87 0 genus Morganella 1242 2 581 582 1 1155 Morganella morganii species 0 1 Xenorhabdus 0 genus 8 1874 6 626 Xenorhabdus bovienii species 0 457 40576 1 species 0 Xenorhabdus nematophila 628 1 462 351671 1 395 0 species Xenorhabdus doucetiae Xenorhabdus hominickii 0 species 1 351679 211 Xenorhabdus poinarii 0 species 341 1 40577 79 1 637 0 genus 79 634113 1 species 0 Arsenophonus symbiont of Lipoptena fortisetosa 4 586 1020 Providencia 3 0 genus 1 474 1 588 0 species Providencia stuartii 280 587 1 0 species Providencia rettgeri species 0 Providencia alcalifaciens 126385 1 263 1535 3 583 1 Proteus 384 genus 0 0 species Proteus vulgaris 257 585 1 584 1 894 Proteus mirabilis 0 species family 0 97 Yersiniaceae 1 1903411 39 24407 Serratia 0 genus 707 1 16 613 16002 8 2647522 5274 0 no rank species 0 Serratia sp. SCBI 661 1 488142 0 species Serratia sp. MYb239 968 1 2033438 1327989 1 708 Serratia sp. FS14 species 0 456 768493 1 0 species Serratia sp. AS13 0 species Serratia sp. AS12 768490 1 456 1758196 1 577 Serratia sp. SSNIH1 0 species 0 species Serratia sp. ATCC 39006 638 1 104623 Serratia sp. FGI94 species 0 1 671990 810 1 61651 871 Serratia ficaria species 0 47917 1 1232 0 species Serratia fonticola 0 species Serratia liquefaciens 1 614 719 3403 1 615 species 0 Serratia marcescens 1 82996 2394 Serratia plymuthica species 0 514 1 28151 species 0 Serratia proteamaculans Serratia rubidaea species 0 888 1 61652 8 0 genus Gibbsiella 1 929812 2 564 556 929813 1 Gibbsiella quercinecans species 0 5933 13 629 1 122 genus 0 Yersinia 1201 1649845 3 species group 0 367190 1 483 Yersinia similis 0 species Yersinia pseudotuberculosis species 0 465 1 633 Yersinia pestis 0 species 1 632 253 293 29485 1 species 0 Yersinia rohdei 29483 1 502 Yersinia aldovae 0 species species 0 Yersinia kristensenii 1 28152 288 1 29484 845 Yersinia frederiksenii 0 species 301 1 263819 Yersinia aleksiciae 0 species 1 630 1542 species 0 Yersinia enterocolitica 353 29486 1 Yersinia ruckeri 0 species 0 no rank 1 2653513 229 Yersinia sp. FDAARGOS_228 species 0 229 1 1839800 257 1 631 Yersinia intermedia species 0 1 1565532 18 0 genus Rouxiella 4 34037 1292 Rahnella 0 genus 48 1 0 no rank 2 2635087 810 0 species Rouxiella sp. ERMR1:05 401 1805933 1 1 741091 409 species 0 Rahnella sp. Y9602 34038 1 434 species 0 Rahnella aquatilis 2 1745211 501 6 genus 0 Chania 1 495 1 1639108 Chania multitudinisentens 0 species 62 order 0 Alteromonadales 1 103 135622 25121 3 267891 358 family 0 1 Moritellaceae 1 1 Moritella 33 genus 0 357 58050 2 1 80854 324 Moritella viscosa 0 species 6 0 family Idiomarinaceae 1 6 267893 671 665 135575 5 1 Idiomarina 0 genus 6 no rank 0 394 2614829 2 species 0 Idiomarina sp. OT37-5b 2100422 1 235 Idiomarina sp. X4 species 0 2055892 1 159 species 0 Idiomarina loihiensis 135577 1 134 131 1096243 1 Idiomarina piscisalsi 0 species Pseudoalteromonadaceae 13 0 family 1 25 267888 6080 1 Pseudoalteromonas 92 genus 0 6067 53246 24 1 247523 391 species 0 Pseudoalteromonas aliena 352 288 1 0 species Pseudoalteromonas atlantica 1 298657 419 species 0 Pseudoalteromonas spongiae species 0 Pseudoalteromonas issachenkonii 1 152297 184 1 228 196 0 species Pseudoalteromonas haloplanktis 43657 1 295 0 species Pseudoalteromonas luteoviolacea 43662 1 328 Pseudoalteromonas piscicida 0 species 166935 1 183 species 0 Pseudoalteromonas translucida Pseudoalteromonas rubra species 0 350 1 43658 28109 1 229 Pseudoalteromonas nigrifaciens species 0 0 species Pseudoalteromonas tunicata 314281 1 222 394751 1 270 Pseudoalteromonas arctica species 0 species 0 Pseudoalteromonas phenolica 1 161398 224 172 1 176102 Pseudoalteromonas agarivorans 0 species 0 species Pseudoalteromonas piratica 258 1348114 1 Pseudoalteromonas tetraodonis 0 species 222 1 43659 176 1 267375 Pseudoalteromonas marina species 0 no rank 0 1281 5 194690 Pseudoalteromonas sp. Bsw20308 species 0 253 1 283699 1761891 1 185 Pseudoalteromonas sp. 13-15 0 species Pseudoalteromonas sp. 1_2015MBL_MicDiv species 0 1 1720343 450 species 0 Pseudoalteromonas sp. NC201 211 1 1514074 Pseudoalteromonas sp. SM9913 0 species 182 1 234831 species 0 Pseudoalteromonas espejiana 28107 1 223 8650 28 72275 1 40 0 family Alteromonadaceae 474 2 89404 genus 0 Glaciecola nitratireducens species 0 300231 1 197 277 2618684 1 0 no rank 277 1 983545 species 0 Glaciecola sp. 4H-3-7+YE-5 1 Alteromonas 0 genus 9 2188 10 226 Alteromonas addita species 0 240 1 287094 28108 1 513 Alteromonas macleodii species 0 0 species Alteromonas stellipolaris 1 233316 226 species 0 Alteromonas mediterranea 407 314275 1 species 0 Alteromonas naphthalenivorans 133 1 715451 0 species Alteromonas australica 166 589873 1 no rank 0 3 2614992 494 1 1917158 142 Alteromonas sp. RW2A1 0 species species 0 Alteromonas sp. Mac1 224 1 1777491 Alteromonas sp. MB-3u-76 species 0 1 2058133 128 genus 0 213 1 1621534 1 326544 213 Paraglaciecola psychrophila species 0 1 genus 0 56 Agarivorans 271 2 261825 680279 1 215 species 0 Agarivorans gilvus 4864 2742 10 1 Marinobacter 0 genus 30 1620 83889 3 no rank 0 0 species Marinobacter sp. CP1 1 1671721 503 Marinobacter sp. LQ44 0 species 798 1 1749259 1 490759 319 Marinobacter sp. BSs20148 0 species species 0 Marinobacter salarius 604 1 1420917 1033846 1 511 0 species Marinobacter adhaerens 1 2743 935 Marinobacter hydrocarbonoclasticus species 0 Marinobacter similis species 0 478 1 1420916 Marinobacter salinus 0 species 353 1 1874317 species 0 Marinobacter psychrophilus 333 1 330734 1751872 2 600 0 genus 17 Lacimicrobium 1 583 1526571 1 Lacimicrobium alkaliphilum species 0 6 family 0 Ferrimonadaceae 1 267892 3 652 2 44011 646 Ferrimonas genus 0 2 1 species 0 Ferrimonas balearica 44012 1 644 1 6 0 family Colwelliaceae 1671 9 267889 1 0 genus 3 Colwellia 1426 6 28228 805 3 196834 0 no rank 195 1 58049 0 species Colwellia sp. MT41 species 0 Colwellia sp. PAMC 20917 1816218 1 336 species 0 Colwellia sp. PAMC 21821 274 1816219 1 1967665 1 241 species 0 Colwellia beringensis 1 28229 377 Colwellia psychrerythraea 0 species 239 2 1518149 1 Thalassotalea 4 0 genus 1763536 1 235 0 species Thalassotalea crassostreae Shewanellaceae 0 family 19 1 267890 25 6478 24 22 6459 Shewanella 60 genus 0 1 0 species Shewanella halifaxensis 202 271098 1 489 60478 1 Shewanella amazonensis species 0 70864 1 215 Shewanella pealeana species 0 278 1 225848 Shewanella psychrophila species 0 Shewanella violacea 0 species 239 60217 1 232 2018305 1 0 species Shewanella bicestrii 322 260364 1 Shewanella marisflavi 0 species 280 1 24 0 species Shewanella putrefaciens 1241 6 196818 no rank 0 0 species Shewanella sp. Pdp11 2059264 1 123 0 species Shewanella sp. W3-18-1 185 351745 1 Shewanella sp. MR-7 species 0 224 60481 1 2029986 1 203 Shewanella sp. WE21 0 species 1 60480 237 0 species Shewanella sp. MR-4 269 1 94122 species 0 Shewanella sp. ANA-3 295 56812 1 0 species Shewanella frigidimarina 1 404011 203 Shewanella piezotolerans 0 species 1 70863 289 Shewanella oneidensis species 0 Shewanella denitrificans species 0 202 1 192073 Shewanella japonica species 0 1 93973 296 0 species Shewanella sediminis 237 271097 1 Shewanella loihica species 0 443 1 359303 Shewanella baltica species 0 1 62322 742 Shewanella woodyi species 0 60961 1 194 499 267894 3 1 1 0 family Psychromonadaceae 0 genus 498 67572 2 215 2614957 1 no rank 0 Psychromonas sp. CNPT3 species 0 1 314282 215 Psychromonas ingrahamii 0 species 283 1 357794 135613 48 14601 0 order 171 Chromatiales 1 72276 18 5806 Ectothiorhodospiraceae 0 family 66 1 Ectothiorhodospira 0 genus 3 1 1051 2 582 0 no rank 579 1 2684909 Ectothiorhodospira sp. BSL-9 species 0 579 1442136 1 2 133193 620 Alkalilimnicola 0 genus 2 1 Alkalilimnicola ehrlichii 0 species 618 1 351052 1 2 0 genus Spiribacter 465 3 1335745 0 species Spiribacter salinus 133 1335746 1 1335757 1 330 0 species Spiribacter curvatus 2 85108 782 Halorhodospira 3 genus 0 1 779 1 1053 Halorhodospira halophila 0 species 1 Acidihalobacter 2 0 genus 430 2 1765964 species 0 Acidihalobacter prosperus 428 160660 1 Thioalkalivibrio 32 0 genus 1 6 106633 2861 1 186931 385 Thioalkalivibrio nitratireducens species 0 530 1 108010 Thioalkalivibrio paradoxus species 0 Thioalkalivibrio sulfidiphilus 0 species 1033854 1 982 563 106634 1 0 species Thioalkalivibrio versutus 0 no rank 2621013 1 369 0 species Thioalkalivibrio sp. K90mix 369 1 396595 5872 1046 16 1 Chromatiaceae family 0 67 53392 2 1262 0 genus 16 Thiodictyon 1 species 0 Candidatus Thiodictyon syntrophicum 1246 1 1166950 genus 0 1 1980513 102 102 1630141 1 Candidatus Nitrosoglobus terrae species 0 1 Allochromatium genus 0 4 958 85072 2 Allochromatium vinosum species 0 1 1049 954 Thiocystis 17 genus 0 1 2 13724 642 1 73141 625 0 species Thiocystis violascens genus 0 12 Thioflavicoccus 1 156885 2 623 species 0 Thioflavicoccus mobilis 80679 1 611 0 no rank 871 1 82569 871 1 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a species 0 558 1227 3 genus 0 1 473531 165 0 species Nitrosococcus watsonii Nitrosococcus oceani 0 species 1 1229 180 species 0 Nitrosococcus halophilus 213 1 133539 Marichromatium 16 0 genus 1 85076 2 789 species 0 Marichromatium purpuratum 773 37487 1 2 451214 820 no rank 0 820 1273155 2 1 0 genus 17 Thiohalobacter species 0 Thiohalobacter thiocyanaticus 803 1 585455 233 1738654 2 1 1 0 family Woeseiaceae genus 0 232 1 1738655 1 1548547 232 Woeseia oceani 0 species Granulosicoccaceae 4 family 0 1 449719 2 479 genus 0 437504 1 475 1 437505 475 0 species Granulosicoccus antarcticus 1 family 0 3 Wenzhouxiangellaceae 525 1676141 3 2 1676142 522 20 0 genus Wenzhouxiangella 1 species 0 Wenzhouxiangella marina 1579979 1 502 255526 4 695 Halothiobacillaceae 5 family 0 1 0 genus 7 Halothiobacillus 1 3 109262 690 1 2636392 463 no rank 0 species 0 Halothiobacillus sp. LS2 1 1860122 463 0 species Halothiobacillus neapolitanus 220 1 927 1 order 0 21 Acidiferrobacterales 1120 1692040 6 1099 1692041 5 1 17 family 0 Acidiferrobacteraceae 1 Sulfuricaulis 8 genus 0 555 2 1744881 547 1620215 1 Sulfuricaulis limicola species 0 527 1692042 2 1 genus 0 17 Sulfurifustis 510 1675686 1 species 0 Sulfurifustis variabilis 1 8 order 0 Pasteurellales 8963 29 135625 712 28 8955 Pasteurellaceae 263 family 0 1 0 genus 490 2094023 1 Glaesserella parasuis species 0 738 1 490 0 genus 6 Actinobacillus 1 5 713 1229 232 67854 1 Actinobacillus succinogenes species 0 373 1 715 species 0 Actinobacillus pleuropneumoniae Actinobacillus equuli species 0 284 718 1 716 1 334 Actinobacillus suis 0 species genus 0 403 214906 1 403 731 1 species 0 Histophilus somni 3 genus 0 Gallibacterium 1 155493 2 396 750 1 393 species 0 Gallibacterium anatis 3 0 genus Mannheimia 1 4 75984 1059 85404 1 413 Mannheimia varigena 0 species 0 no rank 251 1 2645054 251 1432056 1 Mannheimia sp. USDA-ARS-USMARC-1261 species 0 Mannheimia haemolytica species 0 392 1 75985 647 1 476528 genus 0 647 47735 1 0 species Bibersteinia trehalosi 697331 1 375 genus 0 species 0 [Mannheimia] succiniciproducens 157673 1 375 1 Aggregatibacter 11 0 genus 723 416916 3 Aggregatibacter actinomycetemcomitans species 0 331 1 714 381 732 1 Aggregatibacter aphrophilus species 0 1 3 genus 0 Pasteurella 930 3 745 747 1 648 Pasteurella multocida species 0 279 754 1 Pasteurella dagmatis 0 species 0 genus 24 Haemophilus 1 6 724 2440 1 727 810 Haemophilus influenzae species 0 0 species [Haemophilus] ducreyi 1 730 256 770 729 1 0 species Haemophilus parainfluenzae 276 1 2609962 no rank 0 species 0 Haemophilus sp. oral taxon 036 712310 1 276 Haemophilus pittmaniae 0 species 1 249188 304 1 Pseudomonadales 397 0 order 95156 72274 128 1 37 0 family Moraxellaceae 11078 468 42 1252 475 5 1 genus 0 5 Moraxella species 0 Moraxella ovis 189 1 29433 363 386891 1 0 species Moraxella bovoculi Moraxella catarrhalis species 0 241 480 1 Moraxella osloensis species 0 454 1 34062 469 25 8155 76 0 genus Acinetobacter 1 392 487316 1 Acinetobacter soli species 0 756892 1 362 0 species Acinetobacter indicus 253 1 40214 Acinetobacter johnsonii species 0 0 species group 909768 5 3005 1 106654 344 Acinetobacter nosocomialis 0 species 1 48296 837 species 0 Acinetobacter pittii 0 species Acinetobacter lactucae 176 1 1785128 species 0 Acinetobacter baumannii 1185 470 1 Acinetobacter calcoaceticus 0 species 463 471 1 1520 196816 7 no rank 0 1 1608473 209 species 0 Acinetobacter sp. NCu2D-2 0 species Acinetobacter sp. SWBY1 199 2079596 1 Acinetobacter sp. ACNIH2 species 0 1 1758189 211 1407071 1 162 species 0 Acinetobacter sp. TGL-Y2 Acinetobacter sp. ACNIH1 0 species 1 1636603 256 176 1646498 1 Acinetobacter sp. TTH0-4 species 0 1808001 1 307 species 0 Acinetobacter sp. LoGeW2-3 281 1 108981 Acinetobacter schindleri 0 species species 0 Acinetobacter oleivorans 1 1148157 256 220 40216 1 Acinetobacter radioresistens 0 species 1 202950 171 0 species 0 strain Acinetobacter sp. ADP1 62977 1 171 Acinetobacter junii 0 species 40215 1 369 species 0 Acinetobacter haemolyticus 29430 1 312 232 1789224 1 0 species Acinetobacter larvae 1324350 1 427 0 species Acinetobacter equi 0 species Acinetobacter bereziniae 279 106648 1 1 28 genus 0 Psychrobacter 1634 11 497 792 6 196806 no rank 0 137 1699624 1 Psychrobacter sp. P11G5 0 species Psychrobacter sp. P2G3 species 0 94 1699622 1 Psychrobacter sp. DAB_AL43B 0 species 187 1 1028416 1 349106 116 Psychrobacter sp. PRwf-1 0 species Psychrobacter sp. G species 0 571800 1 129 1720344 1 129 species 0 Psychrobacter sp. AntiMn-1 species 0 Psychrobacter alimentarius 191 261164 1 45610 1 188 species 0 Psychrobacter urativorans 156 330922 1 species 0 Psychrobacter cryohalolentis 0 species Psychrobacter arcticus 334543 1 279 1 Pseudomonadaceae 488 0 family 83681 135621 85 80 286 80822 Pseudomonas 2591 0 genus 1 4055 2 136842 species group 0 Pseudomonas chlororaphis 0 species 1 587753 2988 0 species Pseudomonas fragi 296 1 1067 0 species group 6 136845 12055 Pseudomonas fulva species 0 992 47880 1 76759 1 1549 species 0 Pseudomonas monteilii species 0 Pseudomonas oryzihabitans 569 1 47885 6858 303 1 species 0 Pseudomonas putida species 0 Pseudomonas mosselii 1 78327 1533 species 0 Pseudomonas plecoglossicida 70775 1 554 0 species Pseudomonas koreensis 1060 1 198620 10394 9 136843 species group 0 Pseudomonas veronii species 0 76761 1 447 5866 1 294 species 0 Pseudomonas fluorescens 455 47879 1 species 0 Pseudomonas corrugata Pseudomonas trivialis species 0 616 1 200450 830 380021 1 Pseudomonas protegens species 0 803 1 47878 species 0 Pseudomonas azotoformans 487 75612 1 species 0 Pseudomonas mandelii Pseudomonas orientalis species 0 76758 1 470 1 200451 420 species 0 Pseudomonas poae Pseudomonas lurida 0 species 539 244566 1 1042 104087 1 species 0 Pseudomonas frederiksbergensis 1 312306 564 Pseudomonas entomophila species 0 1 237610 780 Pseudomonas psychrotolerans species 0 species 0 Pseudomonas alcaliphila 101564 1 590 Pseudomonas parafulva species 0 927 1 157782 Pseudomonas silesiensis species 0 815 1 1853130 136846 2 4979 species group 0 1 578833 4244 species subgroup 0 Pseudomonas stutzeri 0 species 1 316 4244 species 0 Pseudomonas balearica 735 1 74829 species 0 Pseudomonas knackmussii 874 65741 1 0 species Pseudomonas antarctica 453 219572 1 347 1 157783 Pseudomonas cremoricolorata 0 species 30 196821 17481 no rank 0 Pseudomonas sp. MRSN12121 0 species 1 1611770 618 Pseudomonas sp. DR 5-09 species 0 1145 1 1534110 Pseudomonas sp. TKP species 0 1415630 1 482 869 1259844 1 Pseudomonas sp. FGI182 0 species 0 species Pseudomonas sp. S-6-2 583 1931241 1 0 species Pseudomonas sp. Os17 1 1500686 689 Pseudomonas sp. HLS-6 0 species 1 2049589 399 Pseudomonas sp. VLB120 0 species 525 1 69328 Pseudomonas sp. TCU-HL1 0 species 1856685 1 849 445 1930532 1 0 species Pseudomonas sp. CC6-YY-74 1028989 1 579 Pseudomonas sp. StFLB209 0 species 1659194 1 371 species 0 Pseudomonas sp. GR 6-02 2069256 1 558 species 0 Pseudomonas sp. XWY-1 906 1283291 1 Pseudomonas sp. URMO17WK12:I11 species 0 1 2083054 429 species 0 Pseudomonas sp. LG1D9 0 species Pseudomonas sp. LPH1 1898684 1 570 219 1 1981174 Pseudomonas sp. M30-35 species 0 1 1207075 403 species 0 Pseudomonas sp. UW4 species 0 Pseudomonas sp. FDAARGOS_380 420 1 2018067 Pseudomonas sp. St29 0 species 1 1500687 743 Pseudomonas sp. LH1G9 species 0 512 1 2083055 2083053 1 513 species 0 Pseudomonas sp. SWI44 species 0 Pseudomonas sp. NC02 1 2067572 557 species 0 Pseudomonas sp. ATCC 13867 1 1294143 836 Pseudomonas sp. PONIH3 species 0 1636610 1 607 722 1 1649877 0 species Pseudomonas sp. CCOS 191 0 species Pseudomonas sp. MYb193 339 1827300 1 species 0 Pseudomonas sp. SWI6 499 1 2083051 Pseudomonas sp. SWI36 species 0 587 1 2083052 507 1 1338689 species 0 Pseudomonas sp. JY-Q species group 0 136849 8 7933 Pseudomonas avellanae species 0 505 46257 1 1270 251698 2 0 species subgroup 0 species Pseudomonas amygdali 1 47877 641 0 species Pseudomonas savastanoi 1 29438 629 377 36746 1 0 species Pseudomonas cichorii species 0 Pseudomonas syringae group genomosp. 3 251701 1 840 444 1 2775504 0 no rank species 0 Pseudomonas sp. Lz4W 444 1206777 1 0 species subgroup 251695 1 3769 species 0 Pseudomonas syringae 317 1 3769 728 33069 1 Pseudomonas viridiflava 0 species 493 1583341 1 0 species Pseudomonas cerasi 0 species Pseudomonas brassicacearum 930166 1 1356 species 0 Pseudomonas versuta 1 1788301 499 Pseudomonas rhizosphaerae species 0 548 1 216142 Pseudomonas alkylphenolica 0 species 454 237609 1 0 species group 9993 6 136841 species 0 Pseudomonas aeruginosa 3155 1 287 1 300 2565 Pseudomonas mendocina 0 species Pseudomonas citronellolis species 0 1 53408 1874 Pseudomonas alcaligenes 0 species 43263 1 823 1232139 1 842 species subgroup 0 1 1149133 842 0 species Pseudomonas furukawaii 1 53412 734 Pseudomonas resinovorans species 0 351 3 2183 subfamily 0 3 352 2183 0 genus 45 Azotobacter 1 354 1 759 Azotobacter vinelandii species 0 1379 1 353 0 species Azotobacter chroococcum genus 0 188 1849530 1 188 1 1697053 0 species Oblitimonas alkaliphila 1 order 0 117 Aeromonadales 21765 135624 28 1 0 family 144 Aeromonadaceae 21648 27 84642 2 347533 1121 8 0 genus Zobellella 1 Zobellella denitrificans 0 species 1 347534 1113 225143 2 301 0 genus 144 1903694 1 Oceanisphaera sp. AMac2203 0 species 157 1 1416627 Oceanisphaera profunda 0 species 1 Tolumonas 4 0 genus 548 43947 2 544 43948 1 Tolumonas auensis species 0 1 0 genus 3 Oceanimonas 969 2 129577 2636315 1 966 no rank 0 species 0 Oceanimonas sp. GK1 966 1 511062 1067 genus 0 Aeromonas 1 642 18 18565 0 species Aeromonas hydrophila 1 644 3995 1053 1 645 species 0 Aeromonas salmonicida 1 196024 927 species 0 Aeromonas dhakensis 0 no rank 5601 257493 8 species 0 Aeromonas sp. CA23 2033032 1 759 species 0 Aeromonas sp. ASNIH7 672 1 1920107 467 1636606 1 Aeromonas sp. ASNIH1 0 species 735 1 2033033 0 species Aeromonas sp. CU5 662 1636608 1 species 0 Aeromonas sp. ASNIH3 992 1636609 1 Aeromonas sp. ASNIH4 0 species species 0 Aeromonas sp. ASNIH2 557 1636607 1 757 1758179 1 Aeromonas sp. ASNIH5 species 0 Aeromonas aquatica species 0 558964 1 832 782 948519 1 Aeromonas rivipollensis species 0 Aeromonas veronii 0 species 2149 1 654 597 651 1 0 species Aeromonas media Aeromonas caviae species 0 1 648 662 900 1 652 Aeromonas schubertii 0 species 1 Xanthomonadales 308 order 0 34130 135614 52 1 146 family 0 Rhodanobacteraceae 5992 1775411 14 485 2 242605 1 Luteibacter genus 0 7 Luteibacter rhizovicinus species 0 478 242606 1 42 0 genus Dyella 1 231454 4 2653 Dyella jiangningensis 0 species 709 1 1379159 911 1 445710 species 0 Dyella thiooxydans Dyella japonica 0 species 991 1 231455 Frateuria 0 genus 1 1 70411 2 583 582 81475 1 species 0 Frateuria aurantia genus 0 311 1 2233801 311 2021234 1 Xanthomonadales bacterium D13 0 species genus 0 7 Rhodanobacter 1 2 75309 957 950 666685 1 Rhodanobacter denitrificans 0 species 857 323413 2 1 6 genus 0 Dokdonella 1 323415 851 species 0 Dokdonella koreensis Xanthomonadaceae 275 family 0 1 32033 37 27830 485 1 83614 genus 0 485 1 2006110 species 0 Luteimonas sp. 100111 1969 3 83618 1 0 genus 17 Pseudoxanthomonas Pseudoxanthomonas suwonensis species 0 1488 314722 1 1 415229 464 species 0 Pseudoxanthomonas spadix 40323 9 9729 genus 0 227 Stenotrophomonas 1 1 216778 692 species 0 Stenotrophomonas rhizophila Stenotrophomonas acidaminiphila 0 species 128780 1 1347 no rank 0 2383 4 196198 565 1 1904944 Stenotrophomonas sp. LM091 species 0 Stenotrophomonas sp. WZN-1 0 species 670 1 2005046 1793721 1 575 0 species Stenotrophomonas sp. KCTC 12332 1 1827305 573 Stenotrophomonas sp. MYb57 species 0 1 83617 520 Stenotrophomonas nitritireducens species 0 0 species group 1 995085 4560 Stenotrophomonas maltophilia 0 species 40324 1 4560 11399 17 338 1 609 0 genus Xanthomonas 1575 339 1 Xanthomonas campestris 0 species 442694 1 597 species 0 Xanthomonas perforans 0 species Xanthomonas fragariae 292 1 48664 Xanthomonas euvesicatoria 0 species 1 456327 454 species 0 Xanthomonas sacchari 56458 1 821 456 1 366650 0 species Xanthomonas alfalfae Xanthomonas phaseoli species 0 1985254 1 365 species 0 Xanthomonas hortorum 56454 1 459 2 643453 1819 0 species group 0 species Xanthomonas fuscans 424 366648 1 1 346 1395 0 species Xanthomonas citri Xanthomonas oryzae species 0 1127 347 1 Xanthomonas vesicatoria 0 species 56460 1 552 29447 1 287 Xanthomonas albilineans 0 species 1 53413 379 Xanthomonas axonopodis species 0 1145 1 343 species 0 Xanthomonas translucens 462 56459 1 Xanthomonas vasicola species 0 0 genus 2370 1 483 Xylella fastidiosa 0 species 1 2371 483 3490 5 68 1 Lysobacter 27 0 genus Lysobacter capsici 0 species 435897 1 1012 Lysobacter enzymogenes species 0 69 1 889 Lysobacter gummosus species 0 1 262324 651 0 species Lysobacter antibioticus 1 84531 911 order 0 875 1240482 5 1 Orbaceae family 0 155 875 5 1240483 1 Gilliamella 0 genus 13 324 1193503 2 311 1 1196095 0 species Gilliamella apicola 396 1335631 2 1 6 0 genus Frischella species 0 Frischella perrara 390 1 1267021 1799 10 118884 no rank 0 460 1 349742 0 genus 1543721 1 460 Sedimenticola thiotaurini species 0 genus 0 655184 2 151 species 0 Candidatus Thioglobus singularis 58 1427364 1 0 species Candidatus Thioglobus autotrophicus 1 1705394 93 clade 0 294 3 32036 0 genus 58 1541743 1 Candidatus Ruthia magnifica species 0 58 1 386487 1 410330 131 Calyptogena okutanii thioautotrophic gill symbiont species 0 Bathymodiolus septemdierum thioautotrophic gill symbiont species 0 105 113267 1 Thiolapillus genus 0 9 1 1608298 2 376 367 1 1076588 0 species Thiolapillus brandeum 0 genus 352 1524249 1 1 1249552 352 species 0 Pseudohongiella spirulinae 166 1 198346 0 clade Candidatus Baumannia cicadellinicola 0 species 186490 1 166 135619 66 18094 order 0 259 Oceanospirillales 1 1 1 family 0 Saccharospirillaceae 779 4 255527 1445504 2 590 genus 0 3 Gynuella 1 Gynuella sunshinyii species 0 1445505 1 587 0 genus 188 1 230494 Reinekea forsetii 0 species 1336806 1 188 224379 3 534 Hahellaceae 3 0 family 1 genus 0 3 Hahella 1 2 158481 531 Hahella chejuensis 0 species 158327 1 528 0 family 1 Oleiphilaceae 1 3 191033 270 2 0 genus Oleiphilus 1 141450 2 269 1 141451 267 0 species Oleiphilus messinensis 1 0 family 15 Oceanospirillaceae 2201 135620 11 775 48075 2 1 genus 0 18 Marinobacterium species 0 Marinobacterium aestuarii 1 1821621 757 genus 0 209 187492 1 209 1 187493 0 species Thalassolituus oleivorans 2 188907 232 3 0 genus Oleispira 1 Oleispira antarctica 0 species 1 188908 229 266 1537406 1 genus 0 266 1 1249553 Bacterioplanes sanyensis species 0 28253 4 704 Marinomonas genus 0 6 1 300 1 196814 no rank 0 400668 1 300 Marinomonas sp. MWYL1 0 species 1 936476 204 species 0 Marinomonas posidonica 194 1 119864 species 0 Marinomonas mediterranea Halomonadaceae 132 0 family 1 30 28256 10601 1 1 0 genus Chromohalobacter 544 42054 2 543 158080 1 Chromohalobacter salexigens species 0 3 504090 961 Kushneria 0 genus 10 1 698828 1 484 0 species Kushneria konosiri 467 1 157779 0 species Kushneria marisflavi no rank 0 100 114403 3 8 1 114185 genus 0 0 species Candidatus Carsonella ruddii 1 114186 8 50 235572 1 0 genus Candidatus Portiera aleyrodidarum 0 species 50 1 91844 0 genus 42 1 1495768 Candidatus Evansia muelleri 0 species 1 1495769 42 6909 2745 15 1 Halomonas genus 0 78 725 115561 1 Halomonas hydrothermalis 0 species species 0 Halomonas aestuarii 1 1897729 718 1 1178482 301 0 species Halomonas huangheensis species 0 Halomonas chromatireducens 598 507626 1 Halomonas campaniensis species 0 157 213554 1 0 no rank 2609666 8 3359 500 1 2136172 Halomonas sp. SF2003 species 0 1504981 1 413 Halomonas sp. KO116 species 0 0 species Halomonas sp. R57-5 590 1610576 1 814 1883416 1 species 0 Halomonas sp. 1513 183 1971364 1 species 0 Halomonas sp. GT 0 species Halomonas sp. 'Soap Lake #7' 1962264 1 332 1 1118153 195 species 0 Halomonas sp. GFAJ-1 1 1949203 332 species 0 Halomonas sp. 'Soap Lake #6' 475662 1 973 0 species Halomonas beimenensis 638 2 376488 1 Halotalea 7 0 genus Halotalea alkalilenta species 0 631 376489 1 Salinicola 6 genus 0 1 2 404432 690 Salinicola tamaricis 0 species 684 1771309 1 204286 2 627 0 genus 2 Cobetia 1 1 28258 625 0 species Cobetia marina family 0 810 5 1920240 261963 5 810 5 genus 0 Kangiella 1 species 0 Kangiella koreensis 168 1 261964 Kangiella sediminilitoris 0 species 288 1 1144748 Kangiella geojedonensis species 0 914150 1 124 1 1561924 225 0 species Kangiella profundi 9 224372 2640 Alcanivoracaceae family 0 18 1 1 Ketobacter 0 genus 3 369 2 2025617 Ketobacter alkanivorans 0 species 1 1917421 366 1 35 genus 0 Alcanivorax 2253 59753 6 0 species Alcanivorax xenomutans 1094342 1 526 59754 1 163 0 species Alcanivorax borkumensis Alcanivorax pacificus 0 species 1 1306787 795 561 285091 1 0 species Alcanivorax dieselolei no rank 0 173 2638842 1 173 1113728 1 Alcanivorax sp. NBRC 101098 0 species 72273 29 5795 4 0 order Thiotrichales 1 14 34064 3615 Francisellaceae 0 family 1 1 1 1869285 159 genus 0 1 594679 159 0 species Allofrancisella guangzhouensis 262 12 3455 16 genus 0 Francisella 1 1 573570 248 Francisella sp. TX077310 0 species 0 species Francisella persica 1 954 145 Francisella hispaniensis species 0 1 622488 221 1 549298 175 Francisella halioticida 0 species 2610885 2 400 no rank 0 0 species Francisella sp. MA067296 143 1 475375 0 species Francisella sp. FSC1006 1 1547445 257 1 573569 131 species 0 Francisella sp. TX077308 1 263 774 Francisella tularensis species 0 1 1542390 242 Francisella sp. CA97-1460 0 species 595 1 28110 Francisella philomiragia species 0 657445 1 508 Francisella noatunensis species 0 0 family 2 135617 397 40751 1 197 genus 0 1 40754 197 Thioploca ingrica 0 species 1021 1 200 genus 0 200 1 288004 Beggiatoa leptomitoformis species 0 1 family 0 16 Piscirickettsiaceae 1779 135616 12 Hydrogenovibrio 2 genus 0 1 28884 2 167 0 species Hydrogenovibrio crunogenus 39765 1 165 genus 0 2 40222 559 Methylophaga frappieri species 0 250 1 754477 Methylophaga nitratireducenticrescens 0 species 754476 1 309 genus 0 260 1237 1 1238 1 260 species 0 Piscirickettsia salmonis genus 0 2 933 237 115 92245 1 0 species Thiomicrospira aerophila 0 species Thiomicrospira cyclica 1 147268 122 1 1 0 genus Cycloclasticus 540 4 34067 no rank 0 347 2621467 2 385025 1 157 Cycloclasticus sp. P1 0 species 190 728003 1 Cycloclasticus sp. PY97N species 0 Cycloclasticus zancles 0 species 192 1329899 1 Vibrionales 0 order 6 1 43 135623 14678 Vibrionaceae 120 family 0 1 42 641 14672 Aliivibrio 0 genus 8 1 4 511678 916 0 species Aliivibrio fischeri 298 1 668 346 1 80852 Aliivibrio wodanis 0 species 1 40269 264 Aliivibrio salmonicida species 0 genus 0 5 Grimontia 1 246861 2 228 673 1 223 Grimontia hollisae 0 species 1 genus 0 8 Photobacterium 1294 657 4 Photobacterium profundum 0 species 74109 1 332 1 38293 486 0 species Photobacterium damselae 1 1295392 468 0 species Photobacterium gaetbulicola genus 0 169 1 2042066 Paraphotobacterium marinum 0 species 1 1755811 169 30 662 11945 144 0 genus Vibrio 1 Vibrio coralliilyticus species 0 190893 1 577 0 species group 1 1891919 188 0 species Vibrio tubiashii 1 29498 188 Vibrio tapetis 0 species 52443 1 202 species group 0 4378 717610 10 Vibrio parahaemolyticus species 0 1 670 789 378 669 1 Vibrio harveyi 0 species 696485 1 288 0 species Vibrio owensii 500 691 1 Vibrio natriegens 0 species Vibrio campbellii 0 species 680 1 632 236 1 766224 0 species Vibrio jasicida 610 2 2315253 species subgroup 0 Vibrio diabolicus 0 species 416 1 50719 Vibrio antiquarius 0 species 194 150340 1 species 0 Vibrio rotiferianus 107 190895 1 1 663 838 species 0 Vibrio alginolyticus Vibrio scophthalmi species 0 45658 1 285 species 0 Vibrio furnissii 475 29494 1 species 0 Vibrio mimicus 1 674 678 248 1 2025808 Vibrio qinghaiensis species 0 0 species Vibrio nigripulchritudo 358 28173 1 342 1 1435069 0 species Vibrio tritonius 0 species Vibrio tasmaniensis 212663 1 172 1 687 304 0 species Vibrio gazogenes 553239 1 168 Vibrio breoganii species 0 no rank 0 2614977 2 522 1 1116375 287 Vibrio sp. EJY3 species 0 0 species Vibrio sp. 2521-89 235 2014742 1 672 1 1143 0 species Vibrio vulnificus 0 species Vibrio anguillarum 464 1 55601 0 species Vibrio fluvialis 676 1 523 species 0 Vibrio cholerae 488 1 666 1 1534743 286 Vibrio hyugaensis species 0 1 Nevskiales order 0 2 358 1775403 4 1 568386 3 0 family Sinobacteraceae 0 family 353 2 2689614 2 469322 353 genus 0 3 Steroidobacter 1 Steroidobacter denitrificans species 0 350 1 465721 108511 68525 193 subphylum 0 Epsilonproteobacteria 20 0 class 1 70 29547 27996 235899 4 560 order 0 224467 3 350 Nautiliaceae 1 family 0 1 2 191291 349 Nautilia 4 0 genus 1 244787 1 345 Nautilia profundicola 0 species 0 family 210 2795691 1 genus 0 1 269258 210 0 no rank 1 2624044 210 1 387092 210 Nitratiruptor sp. SB155-2 0 species 213849 65 27416 562 0 order Campylobacterales 1 family 0 2771471 4 747 425 3 202746 1 Sulfurimonas 0 genus 1 0 species Sulfurimonas autotrophica 268 202747 1 1 39766 156 species 0 Sulfurimonas denitrificans genus 0 1 286130 322 322 148813 1 species 0 Sulfuricurvum kujiense 15 72293 2735 1 family 0 Helicobacteraceae 1 225 2 843 1 Wolinella 1 0 genus 224 844 1 Wolinella succinogenes species 0 Helicobacter genus 0 6 1 12 209 2509 1 37372 152 Helicobacter bilis species 0 126 32025 1 species 0 Helicobacter hepaticus Helicobacter cinaedi 0 species 174 213 1 118 1 217 species 0 Helicobacter mustelae Helicobacter pylori species 0 1120 1 210 0 species Helicobacter himalayensis 130 1591088 1 Helicobacter typhlonius species 0 120 1 76936 Helicobacter cetorum species 0 1 138563 238 107 1 212 species 0 Helicobacter acinonychis 133 2593540 1 no rank 0 133 1 222136 0 species Helicobacter sp. MIT 01-6242 0 species Helicobacter felis 1 214 85 0 family 4 2771472 1292 1 269260 515 genus 0 species 0 Nitratifractor salsuginis 1 269261 515 0 genus 1 Sulfurovum 1 265570 3 777 421 1 206403 species 0 Sulfurovum lithotrophicum 355 2646778 1 no rank 0 387093 1 355 species 0 Sulfurovum sp. NBC37-1 72294 41 22080 Campylobacteraceae 1473 0 family 1 Campylobacter 0 genus 212 1 26 194 16459 species 0 Campylobacter hyointestinalis 1 198 203 298 1 824 Campylobacter gracilis 0 species 1031542 1 327 Campylobacter volucris species 0 Campylobacter lari species 0 1 201 722 0 species Campylobacter insulaenigrae 260714 1 222 1965231 1 419 Campylobacter pinnipediorum species 0 0 species Campylobacter cuniculorum 1 374106 274 2593542 4 700 0 no rank Campylobacter sp. RM8964 0 species 1 1660074 183 1 1660073 100 Campylobacter sp. RM6137 species 0 0 species Campylobacter sp. RM12175 186 1 1660076 1 1500960 231 0 species Campylobacter sp. RM16704 species 0 Campylobacter hominis 1 76517 204 0 species Campylobacter iguaniorum 1 1244531 110 301 827 1 species 0 Campylobacter ureolyticus 196 1 639 species 0 Campylobacter fetus 568 75658 1 Campylobacter lanienae 0 species Campylobacter sputorum 0 species 611 206 1 197 1 2931 Campylobacter jejuni species 0 6569 1 195 species 0 Campylobacter coli 522485 1 56 Campylobacter avium 0 species Campylobacter concisus 0 species 283 1 199 species 0 Campylobacter peloridis 488546 1 295 species 0 Campylobacter curvus 115 1 200 497724 1 241 Campylobacter subantarcticus 0 species Campylobacter helveticus species 0 1 28898 159 1 Sulfurospirillum 13 0 genus 1868 9 57665 65553 1 241 Sulfurospirillum deleyianum species 0 206 194424 1 0 species Sulfurospirillum halorespirans Sulfurospirillum barnesii 0 species 1 44674 145 0 no rank 844 3 2618290 Sulfurospirillum sp. JPD-1 species 0 220622 1 282 1 1581011 290 Sulfurospirillum sp. UCH001 0 species Sulfurospirillum sp. SL2-1 species 0 1 1986224 272 species 0 Sulfurospirillum multivorans 1 66821 220 0 species Sulfurospirillum cavolei 199 366522 1 5 2321108 2280 0 no rank no rank 0 634 1 2321207 634 1 944547 species 0 Arcobacter sp. L 1 2321187 578 genus 0 578 1850254 1 Arcobacter sp. LPB0137 0 species 3 28196 1068 Arcobacter 1 genus 0 1 639 1 28197 0 species Arcobacter butzleri 0 species Arcobacter nitrofigilis 428 28199 1 123 28221 80515 Deltaproteobacteria class 0 183 1 Myxococcales 298 0 order 1 38 29 27300 80811 26 20355 0 suborder 1 Vulgatibacteraceae 0 family 6 742 1524213 3 1 7 genus 0 Vulgatibacter 736 2 1524214 729 1391653 1 Vulgatibacter incomptus 0 species 5756 39 9 1 Archangiaceae family 0 126 Melittangium 0 genus 12 1 44 2 1311 species 0 Melittangium boletus 1 83453 1299 Archangium 9 0 genus 1 47 2 1496 species 0 Archangium gephyra 1487 48 1 2 42 1759 Cystobacter genus 0 12 1 43 1 1747 Cystobacter fuscus species 0 1064 40 2 1 Stigmatella 12 genus 0 Stigmatella aurantiaca species 0 1 41 1052 Myxococcaceae 44 family 0 1 9 31 9845 1 Myxococcus 215 genus 0 6434 32 5 1138 1 34 Myxococcus xanthus species 0 1297742 1 1156 Myxococcus hansupus 0 species 0 species Myxococcus fulvus 2738 1 33 1187 83455 1 0 species Myxococcus stipitatus 3367 3 83461 1 genus 0 51 Corallococcus 1 35 1584 0 species Myxococcus macrosporus 1 184914 1732 Corallococcus coralloides species 0 5 1524215 4012 Anaeromyxobacteraceae family 0 31 1 4 161492 3981 0 genus 85 Anaeromyxobacter 1 Anaeromyxobacter dehalogenans 0 species 161493 1 2015 1881 2 2620896 no rank 0 0 species Anaeromyxobacter sp. Fw109-5 1 404589 720 0 species Anaeromyxobacter sp. K 1161 1 447217 0 suborder 5249 80812 8 49 5 4180 family 0 38 Polyangiaceae 1 3258 39643 2 1 genus 0 31 Sorangium Sorangium cellulosum species 0 1 56 3227 1 genus 0 Chondromyces 1 2 50 884 Chondromyces crocatus 0 species 883 52 1 1 family 0 13 Sandaracinaceae 1069 3 1055686 4 0 genus Sandaracinus 1 2 1055688 1056 1052 927083 1 species 0 Sandaracinus amylolyticus 1398 224462 3 0 suborder 224464 3 1398 8 0 family Kofleriaceae 1 20 genus 0 Haliangium 1 2 162027 1390 1370 80816 1 Haliangium ochraceum species 0 26553 25 213115 1 Desulfovibrionales 159 order 0 23849 194924 17 1 112 family 0 Desulfovibrionaceae 3850 2035811 4 1 Pseudodesulfovibrio 24 0 genus 1716143 1 1593 Pseudodesulfovibrio indicus 0 species 182210 1 1297 species 0 Pseudodesulfovibrio aespoeensis 0 species Pseudodesulfovibrio profundus 57320 1 936 645 1 2794998 0 genus 645 880 1 Desulfovibrio salexigens species 0 1009 2582840 1 genus 0 1 873 1009 0 species Desulfovibrio africanus 0 genus 460 1 41707 29546 1 460 0 species Lawsonia intracellularis 17773 9 872 1 130 genus 0 Desulfovibrio 3098 901 1 0 species Desulfovibrio piger 1612 184917 1 0 species Desulfovibrio magneticus 1 2593640 1135 0 no rank 1135 1 631220 species 0 Desulfovibrio sp. G11 Desulfovibrio desulfuricans 0 species 3010 876 1 1 1725232 457 Candidatus Desulfovibrio trichonymphae 0 species 1285 1 58180 0 species Desulfovibrio alaskensis 1 44742 2468 Desulfovibrio fairfieldensis 0 species 881 1 4578 Desulfovibrio vulgaris species 0 406 3 213117 1 0 family 2 Desulfohalobiaceae 45662 2 404 Desulfohalobium 0 genus 2 1 species 0 Desulfohalobium retbaense 1 45663 402 1 Desulfomicrobiaceae 16 family 0 2139 4 213116 12 0 genus Desulfomicrobium 1 898 3 2123 1 132132 977 Desulfomicrobium orale 0 species Desulfomicrobium baculatum 0 species 1134 1 899 1 56 0 order Desulfobacterales 6611 213118 16 213121 7 3035 Desulfobulbaceae family 0 18 1 1 2 0 genus Desulfurivibrio 924 427922 2 1 427923 922 0 species Desulfurivibrio alkaliphilus 1 53318 346 genus 0 1 65555 346 species 0 Desulfocapsa sulfexigens 1 Desulfobulbus genus 0 20 1361 2 893 1986146 1 1341 species 0 Desulfobulbus sp. ORNL genus 0 109168 1 386 84980 1 386 Desulfotalea psychrophila species 0 1 Desulfobacteraceae 0 family 24 3520 8 213119 3 896 1575 10 0 genus Desulfococcus 1 species 0 Desulfococcus multivorans 897 1 600 965 181663 1 Desulfococcus oleovorans 0 species 1 0 genus 4 Desulfatibacillum 880 218207 2 876 259354 1 species 0 Desulfatibacillum alkenivorans genus 0 514 1 2295 Desulfobacterium autotrophicum 0 species 1 2296 514 0 genus 1 28222 527 Desulfobacula toluolica species 0 28223 1 527 505 4 213113 0 order Desulfurellaceae 1 family 0 1 117942 4 505 84404 1 150 0 genus 84405 1 150 0 species Hippea maritima 1 7 genus 0 Desulfurella 354 2 33001 1 33002 347 Desulfurella acetivorans species 0 2118 11 213462 1 16 0 order Syntrophobacterales 1 Syntrophaceae 1 0 family 1343 7 213468 1 Desulfomonile 1 genus 0 368 2357 2 Desulfomonile tiedjei species 0 2358 1 367 Desulfobacca genus 0 1 1 60892 2 427 0 species Desulfobacca acetoxidans 426 60893 1 547 2 43773 1 Syntrophus 9 0 genus species 0 Syntrophus aciditrophicus 1 316277 538 3 213465 759 0 family 3 Syntrophobacteraceae 1 6 genus 0 Syntrophobacter 1 29526 2 756 119484 1 750 0 species Syntrophobacter fumaroxidans 1478 4 453227 1 0 order 21 Desulfarculales 3 453228 1457 Desulfarculaceae family 0 37 1 2 453229 1420 3 genus 0 Desulfarculus 1 453230 1 1417 0 species Desulfarculus baarsii 1 Desulfuromonadales order 0 204 15767 24 69541 10523 213422 14 1 0 family 46 Geobacteraceae 1 7 0 genus Geoalkalibacter 1112 392332 2 483547 1 1105 0 species Geoalkalibacter subterraneus 9365 11 28231 1 Geobacter 160 genus 0 345632 1 1065 0 species Geobacter pickeringii 1 35554 860 0 species Geobacter sulfurreducens Geobacter anodireducens 0 species 1340425 1 916 1 351604 787 Geobacter uraniireducens 0 species 1 1203471 595 species 0 Geobacter daltonii 0 species Geobacter metallireducens 900 28232 1 0 no rank 2627627 2 2274 Geobacter sp. M21 species 0 1 443144 911 443143 1 1363 Geobacter sp. M18 0 species species 0 Geobacter lovleyi 819 1 313985 1 225194 989 Geobacter bemidjiensis species 0 9 213421 5040 Desulfuromonadaceae family 0 52 1 16 0 genus Pelobacter 1 5 18 2954 0 no rank 1 2620299 590 Pelobacter sp. SFB93 species 0 590 1 1842532 0 species Pelobacter propionicus 1097 1 29543 species 0 Pelobacter carbinolicus 1 19 648 species 0 Pelobacter acetylenicus 1 29542 603 3 890 2034 genus 0 16 Desulfuromonas 1 1 2614637 1047 no rank 0 Desulfuromonas sp. DDH964 species 0 1047 1 1823759 1603606 1 971 Desulfuromonas soudanensis 0 species 1 0 class 1 Oligoflexia 2178 1553900 8 2024979 3 525 0 order 1 Bacteriovoracales 1 family 0 1 1652132 250 genus 0 1652133 1 250 species 0 Halobacteriovorax marinus 1 97084 250 274 1 263369 family 0 0 genus 146784 1 274 species 0 Bacteriovorax stolpii 960 1 274 Bdellovibrionales 7 0 order 1 213481 4 1652 3 213483 1645 Bdellovibrionaceae 6 0 family 1 1639 958 2 genus 0 1 959 1475 species 0 Bdellovibrio bacteriovorus species 0 Bdellovibrio exovorus 164 453816 1 28211 548 224747 Alphaproteobacteria 677 class 0 1 407 2 2800059 order 0 2800061 2 407 0 family Maricaulis 0 genus 5 1 2 74317 407 1 74318 402 Maricaulis maris 0 species no rank 0 2135 7 82117 1 Micavibrio genus 0 3 477 213485 2 0 species Micavibrio aeruginosavorus 474 349221 1 225 62654 1 clade 0 genus 0 225 1 767891 1 767892 225 Candidatus Puniceispirillum marinum species 0 1632780 2 868 genus 0 21 Phreatobacter 1 847 1868589 1 species 0 Phreatobacter sp. S-12 2 0 genus Polymorphum 1 991903 2 565 1 991904 563 Polymorphum gilvum species 0 7 54526 557 order 0 genus 0 85 1 2045213 1 1925548 85 Candidatus Fonsibacter ubiquis 0 species 1 0 family Pelagibacteraceae 1 6 1655514 472 231 3 198251 1 1 0 genus Candidatus Pelagibacter no rank 0 2647897 1 69 Candidatus Pelagibacter sp. IMCC9063 species 0 1 1002672 69 161 198252 1 0 species Candidatus Pelagibacter ubique 1655516 2 240 no rank 0 744985 1 102 alpha proteobacterium HIMB59 0 species 859653 1 138 species 0 alpha proteobacterium HIMB5 204455 86 39128 0 order 198 Rhodobacterales 1 1 Rhodobacteraceae 707 0 family 38930 31989 85 genus 0 6 Marinovum 1 2 367771 668 Marinovum algicola species 0 42444 1 662 3 genus 0 Ruegeria 1 97050 3 1291 no rank 0 474 2625375 1 Ruegeria sp. TM1040 0 species 474 292414 1 species 0 Ruegeria pomeroyi 814 89184 1 genus 0 1284657 1 159 Planktomarina temperata species 0 1 1284658 159 1759396 2 337 2 genus 0 Marivivens 1 no rank 0 335 2622455 1 1920883 1 335 0 species Marivivens sp. JLT3646 1 436357 2 Thalassococcus genus 0 no rank 0 803 58840 2 509 1 2033435 species 0 Rhodobacteraceae bacterium QY30 Rhodobacteraceae bacterium 0 species 294 1 1904441 2 227873 903 12 0 genus Pannonibacter 1 species 0 Pannonibacter phragmitetus 891 121719 1 1 Roseibacterium 0 genus 2 466 159345 2 159346 1 464 Roseibacterium elongatum species 0 0 genus 325 1 299261 0 species Tateyamaria omphalii 325 1 299262 191028 2 645 Leisingera 2 genus 0 1 Leisingera methylohalidivorans 0 species 643 1 133924 genus 0 2 263377 1709 928 2640570 1 0 no rank Yangia sp. CCB-MM3 species 0 928 1792508 1 0 species Thiobacimonas profunda 1 1229727 781 120 1 1579315 0 genus 120 1 1579316 0 species Halocynthiibacter arcticus genus 0 2433 2 742 Roseobacter litoralis species 0 427 42443 1 0 species Roseobacter denitrificans 1 2434 315 909 1097466 1 0 genus Defluviimonas alba species 0 1335048 1 909 3 60136 1244 12 genus 0 Sulfitobacter 1 1402135 1 621 Sulfitobacter pseudonitzschiae 0 species 611 1 196795 no rank 0 1917485 1 611 0 species Sulfitobacter sp. AM1-D1 981 58842 2 1 Sagittula 0 genus 2 2624628 1 979 0 no rank 0 species Sagittula sp. P11 2009329 1 979 0 genus 503 1 2211641 503 245188 1 species 0 Loktanella vestfoldensis 1 Ketogulonicigenium genus 0 1 891 3 92944 438 92947 1 Ketogulonicigenium robustum species 0 452 92945 1 Ketogulonicigenium vulgare species 0 2 0 genus Pelagibaca 1 360528 2 808 Pelagibaca abyssi 0 species 806 1 1250539 317 1 119541 0 genus 1 441209 317 Rhodobaca barguzinensis 0 species 1 genus 0 51 Rhodobacter 3920 1060 5 species 0 Rhodobacter sphaeroides 1 1063 1869 no rank 0 2 196779 1254 species 0 Rhodobacter sp. CZR27 773 1 2033869 Rhodobacter sp. LPB0142 0 species 1 1850250 481 746 1061 1 0 species Rhodobacter capsulatus 1 Labrenzia 11 genus 0 2118 478070 4 0 no rank 2 2648686 1379 Labrenzia sp. CP4 species 0 1 1674922 801 species 0 Labrenzia sp. VG12 578 1 2021862 species 0 Labrenzia aggregata 728 187304 1 genus 0 1 74032 705 74033 1 705 Antarctobacter heliothermus species 0 1 Paracoccus 74 0 genus 6029 9 265 580 1 34003 Paracoccus aminophilus 0 species Paracoccus contaminans species 0 1 1945662 661 737 1 34004 species 0 Paracoccus aminovorans 1 266 1047 0 species Paracoccus denitrificans 0 no rank 601 1 246570 Paracoccus sp. BM15 species 0 1529068 1 601 147645 1 963 Paracoccus yeei 0 species 656 2065379 1 Paracoccus sp. CBA4604 species 0 710 1 1077935 0 species Paracoccus zhejiangensis 1609958 2 759 Confluentimicrobium genus 0 1 1 2643318 1 758 no rank 0 1609966 1 758 0 species Confluentimicrobium sp. EMB200-NS6 genus 0 4 Celeribacter 1 5 875170 1784 1411902 1 486 species 0 Celeribacter manganoxidans Celeribacter marinus 0 species 1397108 1 107 1 1758178 456 Celeribacter ethanolicus species 0 731 1208324 1 Celeribacter indicus 0 species 53945 4 774 Octadecabacter genus 0 3 1 1458307 1 208 Octadecabacter temperatus 0 species 53946 1 388 Octadecabacter arcticus species 0 species 0 Octadecabacter antarcticus 1 1217908 175 Roseovarius genus 0 1 1 2 74030 453 1 215743 452 Roseovarius mucosus 0 species 1 1649279 530 0 genus Ruegeria mobilis species 0 530 379347 1 1 24 0 genus Rhodovulum 2114 4 34008 Rhodovulum sulfidophilum species 0 913 1 35806 no rank 0 1177 2631432 2 655 1 308754 Rhodovulum sp. MB263 0 species 522 1 1564506 Rhodovulum sp. P5 0 species 2 285107 567 6 0 genus Thioclava 1 species 0 Thioclava nitratireducens 561 1 1915078 1 Jannaschia 0 genus 3 459 2 188905 0 no rank 456 2645469 1 Jannaschia sp. CCS1 0 species 1 290400 456 genus 0 1 Dinoroseobacter 1 2 309512 560 559 1 215813 Dinoroseobacter shibae 0 species 3628 5 302485 1 51 0 genus Phaeobacter Phaeobacter porticola 0 species 1844006 1 200 1124 60890 1 0 species Phaeobacter gallaeciensis species 0 Phaeobacter inhibens 221822 1 1321 1 1580596 932 0 species Phaeobacter piscinae 894 6 2800060 order 0 894 69657 6 1 Hyphomonadaceae 6 family 0 190 2723 2 1 Hirschia 1 0 genus Hirschia baltica 0 species 189 2724 1 698 3 85 1 Hyphomonas 29 0 genus Hyphomonas neptunium 0 species 377 81032 1 1 2630699 292 0 no rank 0 species Hyphomonas sp. Mor2 292 1 1906738 1 Caulobacterales 45 0 order 9783 204458 19 76892 18 9738 Caulobacteraceae 144 family 0 1 61 genus 0 Brevundimonas 1 41275 7 3341 1 74313 746 species 0 Brevundimonas subvibrioides 1510 3 2622653 no rank 0 458 1 1532555 0 species Brevundimonas sp. DS20 0 species Brevundimonas sp. LM2 582 1938605 1 470 1 1827469 0 species Brevundimonas sp. GW460-12-10-14-LB2 Brevundimonas naejangsanensis species 0 588932 1 560 0 species Brevundimonas vesicularis 41276 1 464 548 76890 1 0 genus 548 1 78587 species 0 Asticcacaulis excentricus 0 genus 23 Caulobacter 1 6 75 4580 69395 1 565 0 species Caulobacter henricii 657 88688 1 species 0 Caulobacter segnis Caulobacter mirabilis 0 species 69666 1 859 1434 155892 1 0 species Caulobacter vibrioides no rank 0 1 2648921 1042 1042 366602 1 0 species Caulobacter sp. K31 0 no rank 81440 1 227 227 1 1759059 species 0 Caulobacteraceae bacterium OTSz_A_272 2 20 898 Phenylobacterium 0 genus 47 1 0 species Phenylobacterium zucineum 851 284016 1 1 244 order 0 Sphingomonadales 35670 82 204457 0 family 331 Sphingomonadaceae 1 41297 59 28762 1 Novosphingobium genus 0 36 2890 5 165696 Novosphingobium resinovorum 0 species 158500 1 635 1 205844 874 0 species Novosphingobium pentaromativorans 646 1 2644732 no rank 0 646 702113 1 Novosphingobium sp. PP1Y 0 species species 0 Novosphingobium aromaticivorans 699 1 48935 541 2 490 Zymomonas 3 genus 0 1 0 species Zymomonas mobilis 487 1 542 413 1 2709685 genus 0 species 0 Sphingorhabdus flavimaris 413 1 266812 544 2 72173 1 0 genus 37 Citromicrobium no rank 0 507 1 2630544 0 species Citromicrobium sp. JL477 1634516 1 507 1 Sphingobium 146 0 genus 8059 15 165695 0 species Sphingobium japonicum 559 1 332056 0 species Sphingobium indicum 562 1 332055 76947 1 405 0 species Sphingobium herbicidovorans Sphingobium cloacae species 0 1 120107 535 641 1 13690 Sphingobium yanoikuyae 0 species Sphingobium baderi 0 species 1332080 1 477 0 no rank 3303 2611147 6 0 species Sphingobium sp. YBL2 699 1 484429 581 1843368 1 species 0 Sphingobium sp. RAC03 species 0 Sphingobium sp. TKS 1315974 1 653 Sphingobium sp. EP60837 species 0 1 1855519 314 634 1 627192 0 species Sphingobium sp. SYK-6 407020 1 422 0 species Sphingobium sp. MI1205 0 species Sphingobium chlorophenolicum 726 46429 1 705 1673076 1 species 0 Sphingobium hydrophobicum 2685927 1 523 genus 0 1 1921510 523 Sphingomonas sp. JJ-A5 0 species 4476 165697 10 1 84 0 genus Sphingopyxis 0 species Sphingopyxis fribergensis 1 1515612 356 0 species Sphingopyxis alaskensis 1 117207 470 Sphingopyxis terrae 0 species 1 33052 329 1756 4 2614943 0 no rank 1913578 1 177 Sphingopyxis sp. LPB0140 0 species 1 1866325 581 species 0 Sphingopyxis sp. MG 475 292913 1 Sphingopyxis sp. 113P3 0 species 523 1 1357916 Sphingopyxis sp. QXT-31 species 0 species 0 Sphingopyxis macrogoltabida 860 33050 1 0 species Sphingopyxis granuli 1 267128 621 1 166 0 genus Sphingomonas 8904 13687 15 species 0 Sphingomonas koreensis 1 93064 580 Sphingomonas melonis 0 species 1 152682 707 196159 6 3596 0 no rank species 0 Sphingomonas sp. LK11 570 1 1390395 1961362 1 765 species 0 Sphingomonas sp. NIC1 1938607 1 598 0 species Sphingomonas sp. LM7 1 745310 804 species 0 Sphingomonas sp. MM-1 species 0 Sphingomonas sp. KC8 1 1030157 403 Sphingomonas sp. Cra20 0 species 1327635 1 456 species 0 Sphingomonas hengshuiensis 568 1 1609977 553 1560345 1 Sphingomonas panacis 0 species 1 1549858 603 species 0 Sphingomonas taxi 1 Sphingomonas wittichii 626 species 0 1448 2 160791 822 1 1283312 Sphingomonas sp. DC-6 0 strain 0 species Sphingomonas sanxanigenens 1 397260 683 1649486 2 623 7 genus 0 Rhizorhabdus 1 616 1850238 1 species 0 Rhizorhabdus dicambivorans 1 Sphingorhabdus 0 genus 24 949 3 1434046 0 no rank 925 2614947 2 species 0 Sphingorhabdus sp. YGSMI21 284 2077182 1 641 1806885 1 species 0 Sphingorhabdus sp. M41 150203 2 560 6 0 genus Blastomonas 1 0 no rank 1 2626550 554 Blastomonas sp. RAC04 0 species 554 1842535 1 Erythrobacteraceae 0 family 105 1 22 335929 6664 genus 0 2800686 2 728 Altererythrobacter mangrovi species 0 374 1 1982042 1 692370 354 species 0 Altererythrobacter dongtanensis genus 0 670 2 1855416 365 1 266951 Erythrobacter seohaensis 0 species 305 1 192812 species 0 Erythrobacter flavus 3 1295327 846 genus 0 20 Croceicoccus 1 1348774 1 322 Croceicoccus naphthovorans 0 species 504 450378 1 Croceicoccus marinus species 0 genus 0 493 1 2800682 species 0 Altererythrobacter namhicola 493 645517 1 658 2 2800681 genus 0 Erythrobacter atlanticus 0 species 1648404 1 246 Erythrobacter gangjinensis species 0 502682 1 412 2800685 1 336 0 genus 336 1 543877 Altererythrobacter marensis 0 species 49 0 genus Altererythrobacter 1 4 361177 1076 0 species Altererythrobacter ishigakiensis 1 476157 127 Altererythrobacter epoxidivorans species 0 1 361183 388 512 1267766 1 0 species Altererythrobacter atlanticus no rank 0 1752 2800788 6 0 genus 32 Erythrobacter 1 3 1041 1003 467 1 1112 0 species Porphyrobacter neustonensis Erythrobacter litoralis 0 species 504 1 39960 1 0 genus 41 Porphyrobacter 749 3 1111 708 2683265 2 no rank 0 species 0 Porphyrobacter sp. LM 6 1 1896196 299 Porphyrobacter HT-58-2 0 species 1 2023229 409 371 order 0 Rhodospirillales 1 64 204441 32443 433 33 12809 Acetobacteraceae 0 family 222 1 1 0 genus 2 Parasaccharibacter 368 1602345 2 species 0 Parasaccharibacter apium 366 1510841 1 genus 0 501 153497 1 Kozakia baliensis species 0 1 153496 501 4 0 genus Neoasaia 1 2 320496 400 Neoasaia chiangmaiensis species 0 320497 1 396 11 0 genus Granulibacter 1 364409 2 1061 Granulibacter bethesdensis 0 species 1050 364410 1 1 Komagataeibacter 31 0 genus 2168 5 1434011 1177712 1 418 Komagataeibacter medellinensis 0 species 385 1 33995 Komagataeibacter europaeus species 0 Komagataeibacter xylinus 0 species 28448 1 972 265960 1 362 Komagataeibacter nataicola 0 species Acetobacter 87 0 genus 1 8 434 3248 Acetobacter pomorum species 0 266 1 65959 species 0 Acetobacter tropicalis 376 1 104102 438 1 1153 Acetobacter pasteurianus species 0 446692 1 299 0 species Acetobacter senegalensis Acetobacter persici species 0 1 1076596 347 0 subgenus 151157 1 473 1 435 473 species 0 Acetobacter aceti 247 1633874 1 Acetobacter oryzifermentans 0 species 125216 3 1874 0 genus 71 Roseomonas 1 Roseomonas gilardii species 0 854 1 257708 0 no rank 949 1 2617492 949 1 2018065 species 0 Roseomonas sp. FDAARGOS_362 Gluconacetobacter 3 genus 0 1 2 89583 538 1 33996 535 0 species Gluconacetobacter diazotrophicus 1 Acidiphilium 23 0 genus 1004 522 3 1 62140 536 Acidiphilium multivorum species 0 species 0 Acidiphilium cryptum 524 1 445 1200 441 3 1 9 0 genus Gluconobacter Gluconobacter albidus 0 species 318683 1 367 824 1 442 species 0 Gluconobacter oxydans genus 0 91914 1 225 225 1 91915 species 0 Asaia bogorensis 19263 41295 30 1 family 0 252 Rhodospirillaceae 2 1543704 865 13 0 genus Niveispirillum 1 Niveispirillum cyanobacteriorum species 0 852 1 1612173 2 1543705 1602 Nitrospirillum 8 0 genus 1 species 0 Nitrospirillum amazonense 1594 28077 1 2 171436 1037 Tistrella 35 0 genus 1 species 0 Tistrella mobilis 1 171437 1002 1 Magnetospira 1 genus 0 325 1182780 2 no rank 0 324 2685734 1 1 1288970 324 species 0 Magnetospira sp. QH-2 4347 5 13134 1 Magnetospirillum 83 0 genus 0 species Magnetospirillum magneticum 1 84159 1026 1985 2617991 2 no rank 0 Magnetospirillum sp. ME-1 0 species 928 1 1639348 species 0 Magnetospirillum sp. XM-1 1057 1 1663591 1253 55518 1 Magnetospirillum gryphiswaldense species 0 338 1612157 2 1 Pararhodospirillum 5 0 genus 1084 1 333 0 species Pararhodospirillum photometricum 1677 1081 3 1 0 genus 32 Rhodospirillum 643 1085 1 0 species Rhodospirillum rubrum 1 34018 1002 0 species Rhodospirillum centenum 5 191 7284 Azospirillum genus 0 135 1 Azospirillum brasilense 0 species 2391 192 1 1226968 1 665 species 0 Azospirillum humicireducens 528244 1 1745 species 0 Azospirillum thiophilum 193 1 2348 0 species Azospirillum lipoferum 1 1804663 274 genus 0 1 1549855 274 Haematospirillum jordaniae 0 species 1082 3 168934 1 Thalassospira 1 genus 0 species 0 Thalassospira xiamenensis 572 1 220697 0 species Thalassospira sp. CSC3H3 509 2048283 1 2 1263978 180 1 0 genus Candidatus Endolissoclinum 1 species 0 Candidatus Endolissoclinum faulkneri 179 1 1263979 1 Holosporales 3 order 0 411 1921002 5 169 1 44746 family 0 169 1 204454 no rank 0 169 86106 1 endosymbiont of Acanthamoeba sp. UWC8 0 species 1 2100208 97 0 family 97 1 1509243 genus 0 0 species Candidatus Nucleicultrix amoebiphila 1 1509244 97 1 0 family 1 Candidatus Paracaedibacteraceae 142 1777752 2 genus 0 1521255 1 141 Candidatus Paracaedibacter acanthamoebae species 0 1 91604 141 Parvularculales 1 order 0 1 3 255473 151 family 0 150 2 255474 1 genus 0 9 Parvularcula 150 208215 2 0 species Parvularcula bermudensis 141 1 208216 828 0 order Rhizobiales 1 211 356 98178 752 5 45404 1 2 0 family Beijerinckiaceae 1 genus 0 1 Beijerinckia 297 2 532 0 species Beijerinckia indica 296 1 533 0 genus 2 Methylocella 1 2 120652 453 451 199596 1 Methylocella silvestris species 0 772 18 2416 0 family 2 Bartonellaceae 1 1 24 genus 0 Bartonella 2414 773 17 70 33047 1 species 0 Bartonella vinsonii Bartonella ancashensis 0 species 105 1318743 1 Bartonella henselae 0 species 1 38323 104 161 85701 1 Bartonella tribocorum 0 species Bartonella quintana species 0 115 803 1 716 2645622 6 0 no rank 1933904 1 132 Bartonella sp. WD16.2 species 0 Bartonella sp. Raccoon60 0 species 120 1 1933912 species 0 Bartonella sp. JB15 1 1933906 113 Bartonella sp. A1379B 0 species 1933910 1 127 1933907 1 113 0 species Bartonella sp. JB63 515256 1 111 Bartonella sp. 1-1C 0 species species 0 Bartonella australis 1 388640 80 Bartonella clarridgeiae 0 species 1 56426 164 774 1 99 Bartonella bacilliformis 0 species Bartonella grahamii species 0 1 33045 140 Bartonella apis 0 species 1686310 1 636 6 31993 1597 Methylocystaceae family 0 31 1 133 3 805 Methylocystis 0 genus 12 1 Methylocystis bryophila 0 species 655015 1 395 398 2625913 1 no rank 0 0 species Methylocystis sp. SC2 398 187303 1 1 30 0 genus Methylosinus 761 425 2 1 426 731 Methylosinus trichosporium species 0 1 Aurantimonadaceae 11 family 0 2988 255475 7 293088 4 2247 Martelella 44 0 genus 1 species 0 Martelella mediterranea 1 293089 735 0 species Martelella endophytica 735 1486262 1 no rank 0 1 2629616 733 species 0 Martelella sp. AD-3 1 686597 733 Aureimonas 6 0 genus 1 2 414371 730 no rank 0 2615206 1 724 1 1349819 724 0 species Aureimonas sp. AU20 32533 54 82115 1 Rhizobiaceae 293 0 family 10 227292 7175 no rank 0 1533 106591 3 1 Ensifer 10 0 genus 678 716925 1 species 0 Ensifer sojae 106592 1 845 Ensifer adhaerens species 0 116 0 genus Sinorhizobium 1 28105 7 5642 2 2613772 1435 no rank 0 1842534 1 881 Sinorhizobium sp. RAC02 0 species 1 794846 554 Sinorhizobium sp. CCBAU 05631 0 species species group 0 1 663276 1388 380 1 1388 Sinorhizobium fredii 0 species 902 194963 1 Sinorhizobium americanum species 0 species 0 Sinorhizobium meliloti 1383 1 382 0 species Sinorhizobium medicae 1 110321 418 227290 35 23459 0 no rank 379 26 16799 Rhizobium 1202 0 genus 1 396 1 1345 0 species Rhizobium phaseoli 1 56730 862 Rhizobium gallicum species 0 Rhizobium leguminosarum species 0 3639 384 1 0 species Rhizobium tropici 700 1 398 no rank 0 7188 20 2613769 1 1703962 2 Rhizobium sp. N1341 species 0 species 0 Rhizobium sp. N113 1 1703960 4 2048897 1 619 Rhizobium sp. NXC24 0 species 1 2020311 376 Rhizobium sp. Kim5 0 species 146 1 1703961 Rhizobium sp. N1314 0 species 146 1 1703966 species 0 Rhizobium sp. N731 1 424182 761 0 species Rhizobium sp. IRBG74 1703965 1 1 Rhizobium sp. N6212 0 species 1 1914541 767 0 species Rhizobium sp. Y9 Rhizobium sp. CIAT894 0 species 1 2020312 478 1703969 1 591 0 species Rhizobium sp. N324 0 species Rhizobium sp. IE4771 1 1301032 423 1703964 1 1 Rhizobium sp. N621 species 0 1869170 1 498 Rhizobium sp. S41 species 0 467 1125847 1 species 0 Rhizobium sp. NT-26 species 0 Rhizobium sp. TAL182 76 1 2020313 1 2028343 586 species 0 Rhizobium sp. 10195 1 1703967 4 0 species Rhizobium sp. N741 1571470 1 769 0 species Rhizobium sp. ACO-34A 473 1 1981173 species 0 Rhizobium sp. NXC14 Rhizobium etli species 0 29449 1 1863 1 0 genus 5 Neorhizobium 1324 2 1525371 Neorhizobium galegae 0 species 1319 1 399 7 357 5336 Agrobacterium 0 genus 87 1 Agrobacterium rhizogenes species 0 1 359 703 488 1 373 0 species Agrobacterium vitis 0 no rank 981 2632611 2 565 1 861208 Agrobacterium sp. H13-3 species 0 Agrobacterium sp. RAC06 species 0 416 1 1842536 3077 1183400 2 0 species group Agrobacterium tumefaciens 0 species 358 1 2473 Agrobacterium fabrum 0 species 604 1176649 1 1 Liberibacter 2 genus 0 434 34019 6 Candidatus Liberibacter americanus species 0 84 1 309868 Candidatus Liberibacter solanacearum 0 species 1 556287 114 Candidatus Liberibacter asiaticus species 0 34021 1 44 99 34020 1 Candidatus Liberibacter africanus species 0 1 1273132 91 species 0 Liberibacter crescens 323620 2 1172 14 0 genus Shinella 1 no rank 0 1158 1 2643062 879274 1 1158 species 0 Shinella sp. HZN7 1 55 0 family Xanthobacteraceae 2788 7 335928 1 16 0 genus Starkeya 838 152053 2 species 0 Starkeya novella 822 1 921 1 41 genus 0 Xanthobacter 918 279 2 1 280 877 Xanthobacter autotrophicus species 0 1 41 genus 0 Azorhizobium 977 6 2 936 7 1 Azorhizobium caulinodans species 0 1 Methylobacteriaceae family 0 115 12009 15 119045 4689 3 2282523 0 genus 1 223967 1340 0 species Methylobacterium populi species 0 Methylobacterium zatmanii 756 29429 1 2593 408 1 0 species Methylobacterium extorquens 6182 407 9 1 Methylobacterium 436 0 genus 927 270351 1 Methylobacterium aquaticum 0 species 1 114616 582 species 0 Methylobacterium nodulans no rank 0 2394 3 2615210 884 1 426117 0 species Methylobacterium sp. 4-46 1479019 1 769 species 0 Methylobacterium sp. C1 741 925818 1 Methylobacterium sp. AMS5 0 species Methylobacterium phyllosphaerae species 0 532 1 418223 Methylobacterium radiotolerans species 0 31998 1 772 1 334852 539 Methylobacterium oryzae 0 species 1023 2 186650 1 Microvirga 9 0 genus Microvirga ossetica 0 species 1014 1 1882682 398 3 119043 1 Rhodobiaceae 1 family 0 256616 2 397 14 0 genus Parvibaculum 1 383 1 256618 0 species Parvibaculum lavamentivorans 1833 119042 6 no rank 0 Pseudorhodoplanes genus 0 9 1 1734920 2 499 490 1 1235591 species 0 Pseudorhodoplanes sinuspersici Methyloceanibacter 2 0 genus 1 1484898 2 593 1 1384459 591 0 species Methyloceanibacter caenitepidi 1572860 2 741 Hartmannibacter 0 genus 7 1 Hartmannibacter diazotrophicus species 0 734 1 1482074 45401 19 7047 Hyphomicrobiaceae 42 0 family 1 626 2 1068 1 Rhodomicrobium 19 0 genus 1 1069 607 Rhodomicrobium vannielii species 0 1 64 genus 0 Devosia 2294 4 46913 no rank 0 2230 3 196773 818 1 1643450 Devosia sp. H5989 0 species 1736675 1 880 0 species Devosia sp. A16 532 2083786 1 Devosia sp. I507 species 0 29407 2 679 Rhodoplanes 24 genus 0 1 655 1 2619116 0 no rank species 0 Rhodoplanes sp. Z2-YC6860 1 674703 655 2 1082930 542 23 0 genus Pelagibacterium 1 531813 1 519 Pelagibacterium halotolerans 0 species 1827 4 81 1 21 0 genus Hyphomicrobium 0 no rank 1 2619925 555 555 1 717785 0 species Hyphomicrobium sp. MC1 1 1427356 572 Hyphomicrobium nitrativorans 0 species 1 53399 679 species 0 Hyphomicrobium denitrificans 119044 2 180 Filomicrobium genus 0 2 1 Candidatus Filomicrobium marinum 0 species 178 1 1608628 59282 2 857 Blastochloris 0 genus 35 1 species 0 Blastochloris viridis 1 1079 822 18371 26 41294 1 Bradyrhizobiaceae family 0 242 1 Oligotropha 1 0 genus 414 2 40136 Oligotropha carboxidovorans 0 species 413 40137 1 1 0 genus 18 Variibacter 353 2 1649510 1333996 1 335 species 0 Variibacter gotjawalensis 1 0 genus 45 Bosea 3227 85413 5 0 no rank 3 2653178 2236 Bosea sp. PAMC 26642 0 species 1792307 1 604 1 1842539 867 species 0 Bosea sp. RAC05 1 2015316 765 Bosea sp. AS-1 species 0 Bosea vaviloviae species 0 946 1 1526658 8983 374 11 1 Bradyrhizobium genus 0 267 Bradyrhizobium japonicum species 0 1381 1 375 1 44255 870 Bradyrhizobium oligotrophicum 0 species 1370 1 1355477 Bradyrhizobium diazoefficiens 0 species Bradyrhizobium icense species 0 585 1274631 1 4510 2631580 6 no rank 0 1 2057741 859 Bradyrhizobium sp. SK17 species 0 288000 1 841 Bradyrhizobium sp. BTAi1 0 species Bradyrhizobium sp. CCGE-LA001 0 species 1 1223566 804 Bradyrhizobium sp. 0 species 376 1 682 638 114615 1 Bradyrhizobium sp. ORS 278 0 species 686 1 115808 Bradyrhizobium sp. ORS 285 0 species 4487 1073 2 1 Rhodopseudomonas genus 0 77 4410 1 1076 Rhodopseudomonas palustris 0 species 1 Nitrobacter 3 genus 0 665 911 3 264 913 1 0 species Nitrobacter winogradskyi 398 1 912 species 0 Nitrobacter hamburgensis 3903 118882 20 1 Brucellaceae 0 family 28 0 genus 639 Brucella 1 14 234 1551 Brucella microti 0 species 1 444163 21 Brucella canis species 0 63 1 36855 2632610 4 444 no rank 0 1 1885919 138 0 species Brucella sp. 141012304 1 1149952 175 Brucella sp. 09RB8471 0 species species 0 Brucella sp. 09RB8910 1 1844051 111 1891098 1 20 0 species Brucella sp. 2002734562 species 0 Brucella ovis 1 236 15 43 29461 1 species 0 Brucella suis 68 120576 1 Brucella pinnipedialis species 0 Brucella vulpis species 0 981386 1 96 species 0 Brucella abortus 33 1 235 1 120577 71 species 0 Brucella ceti species 0 Brucella melitensis 1 29459 58 5 528 2324 9 genus 0 Ochrobactrum 1 1 571256 503 0 species Ochrobactrum pituitosum Ochrobactrum anthropi species 0 693 529 1 501 419475 1 Ochrobactrum pseudogrignonense species 0 species 0 Ochrobactrum sp. A44 618 271865 1 Phyllobacteriaceae 59 family 0 1 20 69277 9205 2 28100 538 Phyllobacterium 2 0 genus 1 1867719 1 536 0 species Phyllobacterium zundukense 1002 31988 2 1 genus 0 3 Aminobacter 1 83263 999 species 0 Aminobacter aminovorans 1 184 genus 0 Mesorhizobium 6303 9 68287 707 325217 1 0 no rank 1 278153 707 species 0 Mesorhizobium sp. WSM1497 Mesorhizobium amorphae species 0 1 71433 877 0 species Mesorhizobium opportunistum 910 593909 1 Mesorhizobium japonicum 0 species 2066070 1 819 0 species Mesorhizobium australicum 536018 1 554 1 1670800 511 0 species Mesorhizobium sp. B7 770 381 1 Mesorhizobium loti species 0 Mesorhizobium ciceri species 0 971 1 39645 2 245876 363 Nitratireductor genus 0 1 1 472175 1 362 Nitratireductor basaltis species 0 596 2 449972 1 Chelativorans 0 genus 3 2643807 1 593 no rank 0 Chelativorans sp. BNC1 0 species 593 266779 1 344 2 274591 1 Hoeflea 4 0 genus 1 2614931 340 0 no rank species 0 Hoeflea sp. IMCC20628 340 1620421 1 4 2036754 1510 Chelatococcaceae 26 family 0 1 28209 3 1484 65 genus 0 Chelatococcus 1 no rank 0 2638111 1 832 Chelatococcus sp. CO-6 0 species 1702325 1 832 587 1 444444 Chelatococcus daeguensis 0 species 766 51 3910 Rickettsiales 5 0 order 1 1 Rickettsiaceae 0 family 3 2098 775 27 genus 0 1 2115980 182 182 1 2115978 Candidatus Phycorickettsia trachydisci 0 species 1913 25 33988 tribe 0 1800 23 780 1 Rickettsia genus 0 245 1129742 2 199 species group 0 1 788 80 0 species Rickettsia canadensis 119 33990 1 Rickettsia bellii 0 species 0 species group 114277 17 935 Rickettsia africae species 0 1 35788 19 Rickettsia philipii species 0 15 1 1105106 35792 1 21 0 species Rickettsia parkeri Rickettsia japonica species 0 10 35790 1 47589 1 54 0 species Rickettsia peacockii 0 species Rickettsia felis 1 42862 227 1 786 108 species 0 Rickettsia akari 1 109232 115 Rickettsia monacensis 0 species 0 species Rickettsia amblyommatis 33989 1 72 0 species Rickettsia heilongjiangensis 1 226665 5 15 1 783 species 0 Rickettsia rickettsii species 0 Rickettsia slovaca 11 35794 1 1 33992 25 0 species Rickettsia rhipicephali 0 species Rickettsia australis 1 787 138 49 781 1 Rickettsia conorii species 0 Rickettsia massiliae 0 species 35791 1 14 0 species Rickettsia montanensis 37 1 33991 no rank 0 95 1 114295 Rickettsia endosymbiont of Bemisia tabaci species 0 337479 1 95 species group 0 326 2 114292 98 1 782 Rickettsia prowazekii 0 species species 0 Rickettsia typhi 228 785 1 2 69474 113 3 0 genus Orientia 1 110 1 784 species 0 Orientia tsutsugamushi 1 1699067 182 0 no rank 1 1528098 182 0 species Rickettsiales bacterium Ac37b 0 family 1 1328881 48 48 411566 1 genus 0 Candidatus Midichloria mitochondrii 0 species 1 234827 48 942 21 1577 0 family 952 8 618 0 tribe 1 Wolbachia 0 genus 7 618 8 953 no rank 0 7 2640676 611 100901 1 80 Wolbachia endosymbiont of Onchocerca ochengi species 0 66 80849 1 Wolbachia endosymbiont of Brugia malayi 0 species species 0 Wolbachia endosymbiont of Drosophila melanogaster 1 163164 46 74 1 77551 Wolbachia endosymbiont of Onchocerca volvulus 0 species 209 77038 1 Wolbachia endosymbiont of Drosophila simulans 0 species Wolbachia endosymbiont of Cimex lectularius species 0 246273 1 83 66084 1 53 0 species Wolbachia sp. wRi 176 768 3 0 genus 31 770 1 0 species Anaplasma marginale 1 106179 118 0 species group 118 1 948 Anaplasma phagocytophilum species 0 1 769 27 Anaplasma centrale 0 species Neorickettsia 4 0 genus 1 4 33993 183 96 1 33994 Neorickettsia helminthoeca 0 species 36 1 951 species 0 Neorickettsia sennetsu 0 species Neorickettsia risticii 950 1 47 600 943 6 1 Ehrlichia genus 0 10 106178 4 499 0 species group 944 1 91 Ehrlichia canis species 0 170 1 945 species 0 Ehrlichia chaffeensis Ehrlichia muris species 0 1 35795 134 104 1 779 Ehrlichia ruminantium 0 species no rank 0 1 106181 91 1 391036 91 species 0 Ehrlichia sp. HF 403 4 1191478 1 order 0 15 Magnetococcales Magnetococcaceae family 0 3 1 1191479 3 388 385 2 162171 1 Magnetococcus genus 0 3 1124597 1 382 Magnetococcus marinus species 0 85 1783257 252327 0 clade 18 204428 1239 0 phylum 0 class 204429 18 1239 12 51291 782 0 order family 0 12 809 782 no rank 0 782 1113537 12 810 12 782 Chlamydia 2 genus 0 1 85991 1 31 species 0 Chlamydia pecorum 0 species Chlamydia gallinacea 117 1457153 1 Chlamydia abortus species 0 83555 1 39 0 species Chlamydia trachomatis 81 813 1 0 species Chlamydia felis 1 83556 49 Chlamydia suis 0 species 32 83559 1 1 83554 168 Chlamydia psittaci 0 species 82 1 83560 Chlamydia muridarum species 0 Chlamydia avium species 0 1457141 1 48 species 0 Chlamydia caviae 66 83557 1 0 species Chlamydia pneumoniae 67 1 83558 1 1 order 0 Parachlamydiales 457 1963360 6 0 family 182 92714 1 182 1 71666 0 genus 0 species Waddlia chondrophila 1 71667 182 family 0 1 Simkaniaceae 1 92712 2 92 0 genus 91 1 34093 91 1 83561 0 species Simkania negevensis 0 family 182 2 92713 1 83551 94 genus 0 Parachlamydia acanthamoebae 0 species 94 83552 1 88 1 282132 0 genus 1 389348 88 0 species Candidatus Protochlamydia naegleriophila 203682 35 8214 4 0 phylum Planctomycetes 1 3 2517206 256 0 class 1 3 0 order Candidatus Brocadiales 256 3 1127829 253 1127830 2 1 Candidatus Brocadiaceae family 0 1 genus 0 380738 1 252 Candidatus Kuenenia stuttgartiensis species 0 1 174633 252 203683 24 6423 Planctomycetia 23 class 0 1 order 0 1694 7 2691356 1 Isosphaeraceae 0 family 7 1694 7 1763524 1 Singulisphaera 1 0 genus 387 2 466152 Singulisphaera acidiphila species 0 466153 1 386 2 1763521 946 genus 0 5 Paludisphaera 1 941 1 1387353 0 species Paludisphaera borealis 1 Isosphaera 1 genus 0 354 2 127 353 1 128 Isosphaera pallida species 0 566 2691355 3 0 order Gemmataceae family 0 1 1 3 1914233 566 2 113 565 Gemmata 0 genus 2 1 563 1 2622970 no rank 0 1 1630693 563 0 species Gemmata sp. SH-PL17 9 112 3406 Planctomycetales 74 order 0 1 3332 126 8 1 Planctomycetaceae 2 0 family 1 Planctomyces 0 genus 12 1998 118 3 1986 2648843 2 0 no rank 0 species Planctomyces sp. SH-PL14 601 1632864 1 Planctomyces sp. SH-PL62 species 0 1385 1 1636152 1 Fuerstia 0 genus 1 480 1936111 2 479 1 1891926 Fuerstia marisgermanicae species 0 387 1 1649490 genus 0 Rubinisphaera brasiliensis 0 species 119 1 387 0 genus 465 1 1649480 465 1 120 species 0 Planctopirus limnophila 734 4 2691354 order 0 family 0 3 2691357 473 genus 0 1 123 239 239 1 125 Pirellula staleyi 0 species 1 Rhodopirellula 2 0 genus 234 265488 2 265606 1 232 Rhodopirellula baltica 0 species 1 2691358 261 family 0 genus 0 261 1 1676125 1331910 1 261 Thermogutta terrifontis 0 species 7 class 0 Phycisphaerae 1 666505 7 1531 1 27 order 0 Phycisphaerales 700 4 666506 673 666507 3 1 0 family 12 Phycisphaeraceae 4 0 genus Phycisphaera 1 2 666508 661 species 0 Phycisphaera mikurensis 547188 1 657 order 0 2 2483366 824 2483367 2 824 family 0 genus 0 824 2 2483368 0 species Phycisphaerae bacterium ST-PulAB-D4 1941349 1 496 Phycisphaerae bacterium L21-RPul-D3 0 species 1 1940790 328 phylum 0 134625 4 691 3 class 0 Kiritimatiellae 1 4 1921781 691 1 Kiritimatiellales 5 0 order 688 1921782 3 683 2 1921783 0 family Kiritimatiella 0 genus 25 1 2 1921784 683 0 species Kiritimatiella glycovorans 658 1 1307763 phylum 0 256845 3 3848 1313211 3 3848 Lentisphaeria 10 0 class 1 3838 278082 2 1 344 0 order Victivallales 0 no rank 3494 1 1674876 3494 1 2094242 Victivallales bacterium CCUG 44730 species 0 1 5 0 phylum Verrucomicrobia 238335 74201 25 233480 5 203494 class 0 1 Verrucomicrobiales 0 order 8 233480 5 48461 1 Akkermansiaceae family 0 6 233472 4 1647988 1 Akkermansia 3 genus 0 233466 239934 3 1100 1 1679444 species 0 Akkermansia glycaniphila 232363 1 239935 Akkermansia muciniphila species 0 1220 2 417295 no rank 0 631 1637999 1 Verrucomicrobia bacterium IMCC26134 species 0 Verrucomicrobia bacterium species 0 589 1 2026799 0 class 134549 1 51 genus 0 134550 1 51 51 1 2648876 0 no rank Candidatus Xiphinematobacter sp. Idaho Grape 0 species 51 1704307 1 232 1955630 5 0 class 5 717963 232 Methylacidiphilales 3 order 0 1 1 1 family 0 Methylacidiphilaceae 229 4 717964 228 3 511745 1 0 genus 1 Methylacidiphilum Methylacidiphilum infernorum 0 species 511746 1 90 species 0 Methylacidiphilum fumariolicum 591154 1 137 1 Opitutae 0 class 23 3347 414999 11 2968 415000 7 1 0 order 38 Opitutales Opitutaceae 0 family 31 1 6 134623 2930 902 1961799 2 1 0 genus 26 Lacunisphaera 1 1838286 876 Lacunisphaera limnophila 0 species 778 2 178440 1 Opitutus 0 genus 11 767 107709 1 0 species Opitutus terrae 1219 278955 1 no rank 0 species 0 Opitutaceae bacterium TAV5 794903 1 1219 1 5 order 0 Puniceicoccales 356 3 415001 family 0 351 2 415002 351 442430 2 1 genus 0 13 Coraliomargarita species 0 Coraliomargarita akajimensis 338 395922 1 57723 21 5252 1 phylum 0 Acidobacteria 1 1 class 0 3 Blastocatellia 369 3 1562566 2 458032 366 Chloracidobacterium 1 0 genus 1 0 species Chloracidobacterium thermophilum 365 1 458033 4882 204432 17 1 18 0 class Acidobacteriia Acidobacteriales 27 order 0 1 204433 12 3949 3922 204434 11 1 Acidobacteriaceae 41 0 family 1 0 genus 8 Granulicella 1177 940557 3 614 940614 1 Granulicella mallensis species 0 0 species Granulicella tundricola 1 940615 555 2 658061 648 Candidatus Koribacter 0 genus 4 1 658062 1 644 species 0 Candidatus Koribacter versatilis 1 0 genus 4 Acidobacterium 702 33973 2 698 1 33075 0 species Acidobacterium capsulatum Terriglobus 0 genus 3 1 3 392733 1354 1 392734 822 0 species Terriglobus roseus 1 870903 529 Terriglobus saanensis species 0 915 4 332160 1 0 order 7 Solibacterales 908 332161 3 1 0 family 3 Solibacteraceae 905 2 332162 1 2 0 genus Candidatus Solibacter Candidatus Solibacter usitatus species 0 1 332163 903