members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4733 29916940 60751 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 31 superkingdom 270 0 68562 2157 5872 0 1783275 clade 47 651137 1467 0 10 phylum 3 no rank 651142 0 459 0 280 1825023 genus 2 126 0 1846278 Candidatus Nitrosotenuis sp. AQ6f species 1 species 1 Candidatus Nitrosotenuis cloacae 0 154 1603555 1 genus 1593364 0 179 1410606 179 0 Candidatus Nitrosopelagicus brevis 1 species 1643678 0 334 4 class 1 273 0 1033996 2 Nitrososphaerales order 3 family 2 0 271 1033997 0 271 497726 1 genus 2 Nitrososphaera 5 1 species Nitrososphaera viennensis 1034015 266 0 1 order 1968909 61 0 1 family 1968910 61 0 498374 61 0 1 genus species 1 Candidatus Nitrosocaldus islandicus 0 61 2045011 31932 674 0 3 order family 3 674 0 338190 506 0 338191 genus 2 1229909 237 0 Candidatus Nitrosopumilus sediminis 1 species 1580092 269 0 Candidatus Nitrosopumilus adriaticus 1 species 1993653 168 0 1 genus Candidatus Nitrosomarinus catalina species 1 168 0 1898749 36 phylum 28889 0 4369 Thermoprotei 2 class 36 1 0 4369 183924 13 order Desulfurococcales 2 114380 0 1149 1 361 0 2307 family 3 genus 1 84 0 2308 species 1 Pyrodictium delaneyi 0 84 1273541 54251 60 0 1 genus species 1 Pyrolobus fumarii 60 0 54252 54247 0 217 1 genus 54248 0 217 1 species Hyperthermus butylicus 0 786 2272 1 family 9 1 Desulfurococcaceae 2 genus 2279 337 0 1 species Staphylothermus marinus 2280 0 155 0 182 84599 Staphylothermus hellenicus species 1 0 155 2273 genus 2 94694 51 0 1 species Desulfurococcus amylolyticus 104 0 2275 Desulfurococcus mucosus species 1 genus 1 0 39 54253 Thermosphaera aggregans 1 species 54254 39 0 54258 182 0 2 genus 1 species Ignicoccus islandicus 54259 18 0 species 1 Ignicoccus hospitalis 0 164 160233 genus 1 72 0 477695 Thermogladius calderae 1 species 1200300 72 0 3 Thermoproteales order 12 1 1369 0 2266 family 5 Thermofilaceae 4 803 0 114378 1 genus 4 799 0 2268 species 1 Thermofilum adornatus 243 0 1365176 Thermofilum carboxyditrophus 1 species 1483572 294 0 Thermofilum pendens species 1 112 0 2269 1550241 0 150 1 species Thermofilum uzonense family 6 0 563 2267 1 genus 76886 56 0 76887 56 0 1 species Caldivirga maquilingensis 2276 0 37 1 genus 2277 37 0 1 species Pyrobaculum islandicum 2270 0 291 2 genus 2271 96 0 Thermoproteus tenax 1 species 1 species Thermoproteus uzoniensis 184117 0 195 179 0 164450 genus 2 species 1 Vulcanisaeta distributa 116 0 164451 63 0 985052 species 1 Vulcanisaeta moutnovskia 2281 1560 0 8 order 0 1560 118883 family 8 1 genus 12914 0 204 Acidianus hospitalis species 1 204 0 563177 2100760 136 0 1 genus 1 species Sulfolobus solfataricus 2287 0 136 1 genus 69655 172 0 111955 172 0 1 species Sulfolobus tokodaii genus 2 0 253 41980 0 113 1006005 Metallosphaera cuprina species 1 Metallosphaera sedula species 1 140 0 43687 genus 3 0 795 2284 no rank 1 134 0 2641160 134 0 1891280 species 1 Sulfolobus sp. A20 species 1 Sulfolobus acidocaldarius 0 156 2285 43080 0 505 Sulfolobus islandicus 1 species order 2 289 0 871006 1 family 255472 169 0 169 0 200414 genus 1 169 0 200415 species 1 Caldisphaera lagunensis 871007 0 120 1 family genus 1 0 120 105850 1 species Acidilobus saccharovorans 242703 0 120 51967 36 0 1 phylum 498845 36 0 1 genus 1 species Candidatus Korarchaeum cryptofilum 498846 0 36 0 72 1783276 clade 1 1801631 72 0 1 phylum 1 genus 2490204 0 72 1920749 0 72 1 species Candidatus Micrarchaeota archaeon Mia14 phylum 222 Euryarchaeota 5 62618 0 28890 1 2290931 0 40993 114 clade 1 23967 0 183963 Halobacteria 144 class 64 215 Halobacteriales 27 order 1 2235 0 9781 family 16 Haloarculaceae 95 0 6183 1963268 1 Halorientalis 28 2 genus 1 1073987 0 765 1 no rank 2648975 0 737 1932360 0 737 Halorientalis sp. IM1011 1 species 929 0 63743 1 genus 3 11 Natronomonas 0 514 2257 Natronomonas pharaonis species 1 0 404 416273 species 1 Natronomonas moolapensis 3 genus 4 Halorhabdus 146825 1336 0 1 Halorhabdus utahensis 1 species 146826 666 0 Halorhabdus tiamatea species 1 666 0 430914 Halomicrobium 2 genus 2 1 0 799 203135 1 species Halomicrobium mukohataei 57705 0 797 genus 5 Haloarcula 95 0 2259 2237 1 1 species Haloarcula taiwanensis 1932004 392 0 Haloarcula hispanica 1 species 51589 642 0 no rank 1 535 0 2624677 species 1 Haloarcula sp. CBA1115 535 0 1592728 2238 0 595 Haloarcula marismortui 1 species 3383 0 2236 1 family 10 16 Halobacteriaceae 0 2211 2239 1 genus 4 Halobacterium 20 826 0 1407499 Halobacterium hubeiense species 1 0 575 2242 species 1 Halobacterium salinarum 2668073 790 0 1 no rank Halobacterium sp. DL1 1 species 751944 0 790 1 332246 0 551 Halalkalicoccus 18 2 genus 413810 0 533 1 species Halalkalicoccus jeotgali 1 255 0 1656823 Halanaeroarchaeum 1 genus 2 1604004 0 254 1 species Halanaeroarchaeum sulfurireducens 0 350 1980514 genus 1 350 0 1873524 species 1 Halodesulfurarchaeum formicicum 1 1644055 6494 0 102 Haloferacales 17 order 2678336 566 0 1 no rank 756883 0 566 1 species halophilic archaeon DL31 3239 0 1644056 1 family 7 11 Haloferacaceae genus 4 Haloferax 53 0 2451 2251 1 species 1 Haloferax volcanii 0 997 2246 0 454 2252 Haloferax mediterranei species 1 species 1 Haloferax gibbonsii 947 0 35746 563 0 60846 genus 1 species 1 Halogeometricum borinquense 0 563 60847 genus 1 214 0 293431 Haloquadratum walsbyi species 1 214 0 293091 family 8 Halorubraceae 24 0 2587 1963271 1 1 1644057 817 0 24 Salinigranum 2 genus species 1 Salinigranum rubrum 0 793 755307 1 1235 0 56688 38 Halorubrum genus 3 0 547 2247 Halorubrum lacusprofundi species 1 29284 0 650 1 species Halorubrum trapanicum 511 0 1209988 1 genus 2 26 Halopenitus Halopenitus persicus species 1 0 485 1048396 1 1644060 0 7548 Natrialbales 91 19 order 114 Natrialbaceae 18 family 1 1644061 7457 0 1 genus 1269201 590 0 0 590 2621923 no rank 1 1 species Salinarchaeum sp. Harcht-Bsk1 1333523 590 0 121871 0 1316 1 3 genus 20 Haloterrigena 588898 593 0 1 species Haloterrigena daqingensis 62320 0 703 1 species Haloterrigena turkmenica 11 Halostagnicola genus 2 1 576 0 353799 565 0 353800 Halostagnicola larsenii species 1 1 203193 747 0 3 Halobiforma 2 genus Halobiforma lacisalsi species 1 0 744 229731 genus 1 0 815 29287 Natronococcus occultus species 1 0 815 29288 Natrialba 3 genus 2 1 761 0 63742 13769 758 0 1 species Natrialba magadii Natrinema 5 genus 3 1 0 1123 88723 1 no rank 2622230 0 620 1 species Natrinema sp. J7-2 406552 620 0 Natrinema pellirubrum 1 species 69525 0 498 2 genus 6 Halopiger 387342 0 1011 1 1 species Halopiger xanaduensis 387343 1005 0 404 0 2256 genus 1 species 1 Natronobacterium gregoryi 0 404 44930 class 50 55 Methanomicrobia 17026 0 224756 1 order 5 Methanocellales 7 0 1059 570264 1 0 1052 570265 1 family 4 Methanocellaceae 1 1 570266 0 1051 2 Methanocella 3 genus 797 0 1175445 Methanocella arvoryzae species 1 0 252 1175444 Methanocella conradii species 1 1 0 5199 2191 53 Methanomicrobiales order 16 88404 840 0 1 family genus 1 0 840 2192 83984 0 840 1 species Methanocorpusculum labreanum family 6 5 Methanoregulaceae 1428 0 1198451 1 3 genus 13 Methanoregula 395331 0 915 1 Methanoregula boonei species 1 338 0 358766 species 1 Methanoregula formicica 0 564 882104 2 genus 1 Methanosphaerula 475087 508 0 1 species 1 Methanosphaerula palustris 507 0 475088 7 family 3 Methanomicrobiaceae 2194 2563 0 1 0 2236 45989 1 genus 4 Methanoculleus 31 2198 763 0 1 species Methanoculleus marisnigri 601 0 2619537 no rank 1 86622 601 0 Methanoculleus sp. MAB1 1 species 83986 841 0 Methanoculleus bourgensis 1 species 230355 324 0 1 2 genus 3 Methanolacinia 54120 321 0 Methanolacinia petrolearia 1 species 196137 0 315 1 family 315 0 2202 genus 1 Methanospirillum hungatei species 1 315 0 2203 1 0 10713 94695 48 Methanosarcinales order 28 23 family 5 Methanosarcinaceae 2206 0 9522 1 422 0 2225 genus 2 0 168 29291 species 1 Methanococcoides burtonii 2226 0 254 1 species Methanococcoides methylutens 1 Methanolobus genus 2 1 0 506 2220 420950 505 0 Methanolobus psychrophilus 1 species 1 genus 2321 0 275 2322 0 275 Methanohalobium evestigatum 1 species 2207 6853 0 1 13 genus 37 Methanosarcina 1 species Methanosarcina lacustris 170861 314 0 1 species Methanosarcina acetivorans 2214 443 0 2644672 1855 0 4 no rank 1434103 0 445 Methanosarcina sp. WWM596 1 species 441 0 1434102 species 1 Methanosarcina sp. WH1 1434099 0 533 Methanosarcina sp. Kolksee 1 species 1434100 0 436 Methanosarcina sp. MTP4 1 species species 1 Methanosarcina mazei 595 0 2209 0 1319 2208 Methanosarcina barkeri species 1 0 840 418008 species 1 Methanosarcina horonobensis 1 species Methanosarcina thermophila 2210 414 0 38027 618 0 Methanosarcina siciliae 1 species 2215 418 0 Methanosarcina vacuolata 1 species 2 genus 2175 654 0 Methanohalophilus halophilus species 1 0 351 2177 1 species Methanohalophilus mahii 2176 0 303 413 0 101191 genus 1 0 413 101192 species 1 Methanomethylovorans hollandica 394 0 196136 genus 1 Methanosalsum zhilinae species 1 0 394 39669 4 family 18 Methanosaetaceae 143067 0 1143 1 2 Methanothrix genus 3 1 0 1125 2222 1 species Methanothrix soehngenii 2223 446 0 301375 0 677 1 species Methanosaeta harundinacea class 41 Thermococci 33 0 7326 183968 1 1 7293 0 2258 8 Thermococcales order 40 0 7285 2259 1 family 39 Thermococcaceae 21 genus 8 2 Pyrococcus 0 825 2260 1 63 0 1609559 species 1 Pyrococcus kukulkanii 2629106 202 0 2 no rank 1183377 0 99 1 species Pyrococcus sp. ST04 342949 0 103 1 species Pyrococcus sp. NA2 Pyrococcus furiosus 1 species 2261 198 0 Pyrococcus abyssi 1 species 29292 174 0 1 species Pyrococcus yayanosii 1008460 78 0 0 108 53953 species 1 Pyrococcus horikoshii 83867 0 70 1 genus Palaeococcus pacificus species 1 70 0 971279 Thermococcus 58 genus 29 1 0 6369 2263 2265 0 172 1 species Thermococcus litoralis 1 species Thermococcus pacificus 71998 320 0 1 species Thermococcus sibiricus 172049 0 258 0 155 1505907 Thermococcus eurythermalis species 1 Thermococcus nautili 1 species 195522 0 237 Thermococcus guaymasensis 1 species 110164 264 0 90 0 342948 species 1 Thermococcus onnurineus 187878 0 187 Thermococcus gammatolerans 1 species 1 species Thermococcus barossii 54077 0 258 species 1 Thermococcus cleftensis 0 220 163003 53952 0 182 Thermococcus peptonophilus 1 species species 1 Thermococcus gorgonarius 211 0 71997 0 1526 2627626 no rank 6 2008440 331 0 Thermococcus sp. 5-4 1 species 342 0 246969 Thermococcus sp. AM4 species 1 Thermococcus sp. EXT12c 1 species 2016361 244 0 0 380 1042877 species 1 Thermococcus sp. 4557 Thermococcus sp. P6 1 species 122420 77 0 Thermococcus sp. 2319x1 species 1 0 152 1674923 582419 205 0 1 species Thermococcus paralvinellae 0 187 311400 Thermococcus kodakarensis species 1 species 1 Thermococcus profundus 0 170 49899 species 1 Thermococcus celer 285 0 2264 261 0 72803 Thermococcus siculi species 1 187880 292 0 Thermococcus radiotolerans 1 species Thermococcus chitonophagus 1 species 54262 0 135 261 0 277988 Thermococcus thioreducens species 1 Thermococcus barophilus species 1 268 0 55802 0 167 1712654 Thermococcus piezophilus species 1 4542 0 2283796 clade 17 1 183967 4320 0 24 Thermoplasmata 15 class 0 907 1234666 no rank 1 0 907 1495144 species 1 methanogenic archaeon ISO4-H5 order 5 0 1305 1235850 3 family Methanomassiliicoccaceae 2 1577788 0 643 1 genus 1 234 0 1607807 0 234 1577791 Candidatus Methanoplasma termitum species 1 1 genus 1080709 0 407 species 1 Candidatus Methanomassiliicoccus intestinalis 407 0 1406512 family 2 0 662 2517203 1 1291539 0 662 Candidatus Methanomethylophilus 18 2 genus Candidatus Methanomethylophilus alvus species 1 644 0 1291540 0 2084 2301 1 order 8 Thermoplasmatales 2 1 family 1747776 128 0 0 128 1747777 genus 1 Cuniculiplasma divulgatum species 1 128 0 1673428 0 190 46630 family 1 0 190 46631 genus 1 Picrophilus torridus species 1 0 190 82076 family 2 0 294 46659 0 294 2302 genus 2 131 0 2303 species 1 Thermoplasma acidophilum 1 species Thermoplasma volcanium 50339 163 0 1919231 0 915 1 no rank 1 species Thermoplasmatales archaeon BRNA1 1054217 0 915 555 0 90142 family 2 555 0 74968 genus 2 species 1 Ferroplasma acidiphilum 0 258 74969 Ferroplasma acidarmanus species 1 0 297 97393 1803510 0 222 2 clade genus 2 222 0 379546 no rank 1 74 0 2633939 species 1 Aciduliprofundum sp. MAR08-339 0 74 673860 1 species Aciduliprofundum boonei 379547 0 148 8339 0 2283794 clade 39 0 5008 183925 class 24 24 order 2158 0 5008 2 family 2178 0 213 1 2179 213 0 1 Methanothermus 2 genus 0 212 2180 Methanothermus fervidus species 1 2159 0 4795 1 22 family 13 Methanobacteriaceae 1 2172 0 2450 2 Methanobrevibacter 7 genus 2173 588 0 Methanobrevibacter smithii 1 species Methanobrevibacter olleyae 1 species 294671 0 380 457 0 83816 species 1 Methanobrevibacter ruminantium 0 410 230361 species 1 Methanobrevibacter millerae 2638681 0 613 2 no rank 291 0 224719 Methanobrevibacter sp. AbM4 species 1 1609968 322 0 Methanobrevibacter sp. YE315 1 species genus 1 0 411 2316 1 species Methanosphaera stadtmanae 2317 0 411 1571 0 2160 1 genus 8 Methanobacterium 2 877455 0 292 1 species Methanobacterium lacus 0 166 59277 species 1 Methanobacterium subterraneum 2627676 322 0 2 no rank 1379702 0 175 Methanobacterium sp. MB1 1 species 1911685 147 0 Methanobacterium sp. MZ-A1 1 species 0 218 2162 Methanobacterium formicicum species 1 868131 0 293 Methanobacterium paludis 1 species 118062 0 278 1 species Methanobacterium congolense 2 Methanothermobacter 5 genus 1 145260 350 0 1 no rank 2631116 0 114 1 species Methanothermobacter sp. CaT2 866790 0 114 species 1 Methanothermobacter thermautotrophicus 55 0 145262 0 116 145263 Methanothermobacter marburgensis species 1 1 species Methanothermobacter wolfeii 145261 63 0 class 15 Methanococci 33 3331 0 183939 1 order 14 Methanococcales 1 0 3298 2182 1 family 5 0 1962 2183 genus 1 190 0 155862 0 190 155863 Methanothermococcus okinawensis species 1 genus 4 1772 0 2184 Methanococcus maripaludis 1 species 39152 0 1145 0 363 2188 Methanococcus voltae species 1 Methanococcus aeolicus 1 species 42879 128 0 136 0 2187 Methanococcus vannielii species 1 0 1335 196117 family 8 Methanotorris 2 genus 2 1 0 303 196119 2189 0 301 Methanotorris igneus 1 species 6 genus 196118 0 1032 202 0 2641196 no rank 1 species 1 Methanocaldococcus sp. FS406-22 202 0 644281 1301915 0 206 1 species Methanocaldococcus bathoardescens species 1 Methanocaldococcus vulcanius 219 0 73913 2190 0 129 1 species Methanocaldococcus jannaschii 0 63 67760 Methanocaldococcus infernus species 1 1 species Methanocaldococcus fervens 83171 0 213 class 10 1413 0 183980 order 10 0 1413 2231 0 1413 2232 1 family 10 1 Archaeoglobaceae genus 2 Ferroglobus 1 171 0 54260 1 1 species Ferroglobus placidus 54261 0 170 2233 659 0 1 5 genus Archaeoglobus 1 0 50 84156 species 1 Archaeoglobus profundus species 1 Archaeoglobus veneficus 0 135 58290 Archaeoglobus sulfaticallidus 1 species 1316941 0 217 0 256 2234 species 1 Archaeoglobus fulgidus genus 2 582 0 190818 386 0 113653 species 1 Geoglobus ahangari species 1 Geoglobus acetivorans 196 0 565033 2 29787627 0 1 4431 superkingdom Bacteria 142 0 29462 32066 phylum 23 1 29462 0 203490 Fusobacteriia 33 class 23 29429 0 203491 1 order 22 35 Fusobacteriales 1 9710 0 1129771 18 Leptotrichiaceae family 10 genus 1 1762 0 32068 826 1762 0 Sebaldella termitidis 1 species 2319 0 168808 1 genus 2 2 Sneathia 0 2317 187101 species 1 Sneathia amnii 5 genus 12 Leptotrichia 32067 0 4749 1 no rank 3 3752 0 2633022 Leptotrichia sp. oral taxon 847 species 1 0 1079 1785996 0 1096 712368 Leptotrichia sp. oral taxon 498 species 1 712357 1577 0 Leptotrichia sp. oral taxon 212 1 species Leptotrichia buccalis species 1 985 0 40542 genus 1 862 0 34104 1 species Streptobacillus moniliformis 34105 862 0 11 family Fusobacteriaceae 61 203492 19684 0 1 0 18243 848 1 genus 9 Fusobacterium 75 Fusobacterium periodonticum species 1 0 3620 860 851 4778 0 1 species Fusobacterium nucleatum species 1 Fusobacterium varium 0 3002 856 Fusobacterium hwasookii species 1 0 1575 1583098 Fusobacterium ulcerans species 1 0 1787 861 859 958 0 1 species Fusobacterium necrophorum 1 species Fusobacterium gonidiaformans 849 0 1129 850 0 1319 1 species Fusobacterium mortiferum genus 1 1380 0 167639 167642 0 1380 1 species Ilyobacter polytropus 14929 0 57723 phylum 20 Blastocatellia 4 class 3 1 1411 0 1562566 1 0 1407 458032 18 Chloracidobacterium genus 2 Chloracidobacterium thermophilum species 1 0 1389 458033 13518 0 204432 1 class 17 93 Acidobacteriia 104 Acidobacteriales order 12 1 0 10674 204433 123 Acidobacteriaceae 11 family 1 204434 0 10570 24 Terriglobus genus 3 1 3496 0 392733 species 1 Terriglobus saanensis 1440 0 870903 0 2032 392734 species 1 Terriglobus roseus Granulicella 51 3 genus 1 940557 0 3403 0 1454 940615 Granulicella tundricola species 1 1898 0 940614 species 1 Granulicella mallensis 1 1783 0 33973 Acidobacterium 20 genus 2 species 1 Acidobacterium capsulatum 0 1763 33075 1 0 1765 658061 13 Candidatus Koribacter genus 2 Candidatus Koribacter versatilis 1 species 658062 0 1752 1 2751 0 332160 Solibacterales 73 order 4 2678 0 332161 1 family 3 Solibacteraceae 36 332162 0 2642 1 2 genus Candidatus Solibacter 39 1 species Candidatus Solibacter usitatus 332163 0 2603 203691 0 56454 57 phylum 176 Spirochaetia 57 class 1 203692 56454 0 1 0 46130 136 Spirochaetales 2067 order 41 family 17 12 Borreliaceae 3532 0 1643685 1 138 0 1647 1 8 genus 6 Borrelia 141 201 0 Borrelia parkeri 1 species 1 species Borrelia duttonii 40834 211 0 0 469 47466 species 1 Borrelia miyamotoi species 1 Borrelia turicatae 0 225 142 158 0 140 Borrelia hermsii species 1 44449 196 0 1 species Borrelia recurrentis Borrelia anserina 1 species 143 181 0 64895 0 1873 1 8 genus Borreliella 38 95 0 64897 Borreliella bissettii species 1 664662 0 207 1 species Borreliella bavariensis 1 species Borreliella garinii 29519 400 0 139 0 208 1 species Borreliella burgdorferi 29518 345 0 1 species Borreliella afzelii Borreliella valaisiana species 1 261 0 62088 1 species Borrelia mayonii 1674146 319 0 family 23 Spirochaetaceae 705 40531 0 137 1 genus 1 0 1548 1616789 Salinispira pacifica species 1 1548 0 1307761 1 157 0 27476 1051 Treponema 12 genus 409322 0 620 1 species Treponema pedis Treponema primitia species 1 1793 0 88058 Treponema paraluiscuniculi species 1 0 161 53435 1 no rank 2638727 0 3251 1 species Treponema sp. OMZ 838 1539298 3251 0 Treponema pallidum species 1 194 0 160 81028 0 2303 Treponema brennaborense 1 species Treponema succinifaciens species 1 0 9968 167 150829 0 1922 1 species Treponema azotonutricium Treponema caldarium species 1 0 1186 215591 221027 3380 0 1 species Treponema putidum species 1 Treponema denticola 1647 0 158 1 2339 0 1911556 1 Sediminispirochaeta genus 2 2338 0 55206 species 1 Sediminispirochaeta smaragdinae 23 Spirochaeta 3 genus 1 146 3564 0 0 2122 154 species 1 Spirochaeta thermophila 0 1419 46355 Spirochaeta africana species 1 1 399320 4899 0 Sphaerochaeta 19 4 genus 2072 0 1131703 species 1 Sphaerochaeta globosa species 1 Sphaerochaeta coccoides 1557 0 273376 Sphaerochaeta pleomorpha 1 species 1131707 0 1251 1643688 0 3802 8 order 0 3802 170 1 family 8 6 Leptospiraceae 338321 934 0 1 genus 29510 934 0 1 species Turneriella parva 1 171 2862 0 17 Leptospira 6 genus species 1 Leptospira santarosai 532 0 28183 Leptospira biflexa species 1 369 0 172 1 species Leptospira interrogans 173 852 0 Leptospira alstonii 1 species 28452 412 0 Leptospira borgpetersenii 1 species 174 680 0 0 6346 1643686 1 order 7 10 Brachyspirales 1 6336 0 143786 28 Brachyspiraceae family 6 6308 0 29521 1 genus 5 22 Brachyspira 84377 1109 0 1 species Brachyspira intermedia 0 2350 52584 Brachyspira pilosicoli species 1 Brachyspira hyodysenteriae species 1 1576 0 159 1 species Brachyspira murdochii 84378 0 1251 97 clade 1783257 0 64872 256845 17543 0 3 phylum class 3 36 Lentisphaeria 0 17543 1313211 1 1 278082 0 17507 2953 Victivallales 2 order 14554 0 1674876 no rank 1 species 1 Victivallales bacterium CCUG 44730 14554 0 2094242 phylum 5 1918 0 134625 1 1918 0 1921781 Kiritimatiellae 9 class 5 order 4 13 Kiritimatiellales 1909 0 1921782 1 1 1896 0 1921783 2 Kiritimatiellaceae family 3 Kiritimatiella 31 genus 2 1 0 1894 1921784 1863 0 1307763 Kiritimatiella glycovorans species 1 204428 2844 0 23 phylum Chlamydiia 7 23 class 1 204429 2844 0 1 51291 1420 0 6 Chlamydiales 14 order 1 0 1414 809 Chlamydiaceae 1 family 13 0 1413 1113537 no rank 12 810 0 1413 1 12 genus Chlamydia 79 Chlamydia trachomatis species 1 0 118 813 species 1 Chlamydia gallinacea 0 131 1457153 0 165 1457141 species 1 Chlamydia avium 107 0 83560 species 1 Chlamydia muridarum species 1 Chlamydia felis 0 137 83556 83557 0 49 1 species Chlamydia caviae species 1 Chlamydia pecorum 0 101 85991 1 species Chlamydia pneumoniae 83558 79 0 1 species Chlamydia suis 83559 152 0 0 208 83554 species 1 Chlamydia psittaci 0 87 83555 species 1 Chlamydia abortus 0 1417 1963360 1 order 8 2 Parachlamydiales 4 family 92713 777 0 2 genus 1 Parachlamydia 83551 0 351 1 83552 0 350 Parachlamydia acanthamoebae 1 species Candidatus Protochlamydia 6 2 genus 1 282132 426 0 389348 420 0 1 species Candidatus Protochlamydia naegleriophila 1 family 92714 0 426 genus 1 426 0 71666 species 1 Waddlia chondrophila 426 0 71667 16 Simkaniaceae 2 family 1 92712 212 0 34093 196 0 1 genus Simkania negevensis 1 species 83561 196 0 phylum 39 24 Planctomycetes 22407 0 203682 1 28 class Planctomycetia 66 203683 0 17529 1 order 6 1961 0 2691354 0 1316 2691357 family 4 1 123 618 0 19 Pirellula 2 genus 599 0 125 Pirellula staleyi species 1 265488 698 0 1 2 genus Rhodopirellula 1 species 1 Rhodopirellula baltica 0 697 265606 family 2 0 645 2691358 0 645 1676125 1 genus 2 4 Thermogutta Thermogutta terrifontis 1 species 1331910 0 641 order 11 Planctomycetales 270 0 8973 112 1 10 family Planctomycetaceae 34 126 8703 0 1 1 1649480 1065 0 7 Planctopirus 2 genus 120 0 1058 Planctopirus limnophila 1 species Planctomyces 45 genus 3 1 0 5398 118 2 no rank 2648843 5353 0 1632864 1859 0 Planctomyces sp. SH-PL14 1 species 3494 0 1636152 Planctomyces sp. SH-PL62 species 1 1 1936111 1440 0 Fuerstia 10 2 genus Fuerstia marisgermanicae species 1 0 1430 1891926 Rubinisphaera 4 genus 2 1 0 766 1649490 1 species Rubinisphaera brasiliensis 119 762 0 1305 0 2691355 order 3 Gemmataceae 7 family 3 1 1305 0 1914233 10 Gemmata genus 2 1 1298 0 113 1 no rank 2622970 1288 0 0 1288 1630693 Gemmata sp. SH-PL17 species 1 0 5224 2691356 order 7 1763524 5224 0 1 7 family Isosphaeraceae 74 genus 2 26 Paludisphaera 2662 0 1763521 1 Paludisphaera borealis species 1 0 2636 1387353 Isosphaera 2 2 genus 1 127 0 952 1 species Isosphaera pallida 128 950 0 1536 0 466152 1 genus 2 13 Singulisphaera Singulisphaera acidiphila species 1 1523 0 466153 3 class 2517206 0 671 671 0 1127829 1 order 3 16 Candidatus Brocadiales 1127830 0 655 2 family Candidatus Kuenenia 1 genus 2 1 0 655 380738 1 species Candidatus Kuenenia stuttgartiensis 174633 654 0 1 666505 0 4183 Phycisphaerae 22 7 class 2483366 1911 0 2 order 2 family 2483367 1911 0 1911 0 2483368 genus 2 1230 0 1941349 species 1 Phycisphaerae bacterium ST-PulAB-D4 Phycisphaerae bacterium L21-RPul-D3 1 species 1940790 681 0 4 order 76 Phycisphaerales 666506 2250 0 1 666507 2174 0 1 3 family 10 Phycisphaeraceae 0 2164 666508 1 genus 2 6 Phycisphaera 0 2158 547188 Phycisphaera mikurensis species 1 1 74201 0 20160 20 Verrucomicrobia 27 phylum 2 class 134549 118 0 1 134550 118 0 7 Candidatus Xiphinematobacter 2 genus 1 no rank 2648876 111 0 Candidatus Xiphinematobacter sp. Idaho Grape 1 species 1704307 0 111 class 6 11 Verrucomicrobiae 6224 0 203494 1 1 6213 0 48461 Verrucomicrobiales 51 order 5 1 0 6162 1647988 Akkermansiaceae 56 family 4 239934 6106 0 1 3 genus 42 Akkermansia species 1 Akkermansia muciniphila 0 3512 239935 1679444 2552 0 1 species Akkermansia glycaniphila 2 no rank 417295 3591 0 Verrucomicrobia bacterium IMCC26134 1 species 1637999 0 1838 2026799 1753 0 Verrucomicrobia bacterium 1 species Methylacidiphilae 13 4 class 1 1955630 0 408 717963 395 0 3 order family 3 395 0 717964 1 0 395 511745 Methylacidiphilum 1 genus 3 511746 208 0 1 species Methylacidiphilum infernorum 186 0 591154 Methylacidiphilum fumariolicum species 1 0 9799 414999 1 class 12 Opitutae 95 415001 0 1199 1 4 order 16 Puniceicoccales Puniceicoccaceae 5 3 family 1 415002 1183 0 1 0 1178 442430 Coraliomargarita 25 genus 2 species 1 Coraliomargarita akajimensis 0 1153 395922 Opitutales 201 7 order 1 415000 8505 0 1 134623 0 8304 88 Opitutaceae 6 family Lacunisphaera 32 genus 2 1 2522 0 1961799 Lacunisphaera limnophila species 1 0 2490 1838286 no rank 1 0 3215 278955 Opitutaceae bacterium TAV5 1 species 794903 0 3215 1 178440 0 2479 41 Opitutus 2 genus Opitutus terrae species 1 2438 0 107709 phylum 2005 Proteobacteria 1147 0 2687940 1224 1 196 subphylum 68525 267017 0 class 70 Epsilonproteobacteria 232 64756 0 29547 1 order 5 0 1094 235899 family 3 1 Nautiliaceae 0 758 224467 1 genus 2 16 Nautilia 0 757 191291 1 species 1 Nautilia profundicola 741 0 244787 family 2 336 0 2795691 269258 336 0 1 2 genus Nitratiruptor 3 333 0 2624044 no rank 1 Nitratiruptor sp. SB155-2 species 1 0 333 387092 1 213849 0 63430 Campylobacterales 2007 64 order 51655 0 72294 1 family 41 Campylobacteraceae 3160 no rank 5 4040 0 2321108 2321187 1085 0 1 genus Arcobacter sp. LPB0137 1 species 1850254 1085 0 genus 3 Arcobacter 6 0 2026 28196 1 756 0 28199 Arcobacter nitrofigilis species 1 Arcobacter butzleri species 1 1264 0 28197 1 no rank 2321207 929 0 944547 929 0 1 species Arcobacter sp. L genus 9 39 Sulfurospirillum 0 3149 57665 1 404 0 194424 species 1 Sulfurospirillum halorespirans 1 species Sulfurospirillum deleyianum 65553 0 306 1242 0 2618290 no rank 3 220622 429 0 Sulfurospirillum sp. JPD-1 1 species species 1 Sulfurospirillum sp. UCH001 0 314 1581011 Sulfurospirillum sp. SL2-1 1 species 1986224 0 499 0 361 66821 Sulfurospirillum multivorans species 1 Sulfurospirillum cavolei species 1 420 0 366522 Sulfurospirillum barnesii species 1 0 377 44674 1 194 41306 0 Campylobacter 519 26 genus 1 species Campylobacter jejuni 197 4116 0 0 640 76517 Campylobacter hominis species 1 1 species Campylobacter helveticus 28898 187 0 0 24743 195 species 1 Campylobacter coli 1 species Campylobacter curvus 200 484 0 Campylobacter sputorum species 1 751 0 206 Campylobacter cuniculorum species 1 253 0 374106 75658 916 0 Campylobacter lanienae 1 species 2593542 0 1555 4 no rank 1660076 0 316 1 species Campylobacter sp. RM12175 505 0 1500960 Campylobacter sp. RM16704 species 1 species 1 Campylobacter sp. RM6137 0 288 1660073 0 446 1660074 Campylobacter sp. RM8964 species 1 1 species Campylobacter fetus 196 918 0 1244531 0 290 1 species Campylobacter iguaniorum 488546 459 0 1 species Campylobacter peloridis 1 species Campylobacter pinnipediorum 1965231 609 0 species 1 Campylobacter hyointestinalis 582 0 198 1031542 390 0 1 species Campylobacter volucris 522485 331 0 Campylobacter avium 1 species 201 0 1099 Campylobacter lari 1 species 1 species Campylobacter concisus 199 0 630 798 0 824 species 1 Campylobacter gracilis Campylobacter subantarcticus 1 species 497724 0 406 Campylobacter ureolyticus 1 species 827 0 348 260714 282 0 1 species Campylobacter insulaenigrae 2771471 1434 0 3 family 0 885 202746 genus 2 0 490 202747 species 1 Sulfurimonas autotrophica Sulfurimonas denitrificans 1 species 39766 0 395 genus 1 549 0 286130 148813 0 549 1 species Sulfuricurvum kujiense family 5 2454 0 2771472 9 Sulfurovum genus 3 1 1337 0 265570 206403 633 0 1 species Sulfurovum lithotrophicum no rank 1 695 0 2646778 species 1 Sulfurovum sp. NBC37-1 695 0 387093 1 269260 0 1117 Nitratifractor 3 2 genus Nitratifractor salsuginis species 1 1114 0 269261 family 14 Helicobacteraceae 35 5880 0 72293 1 843 475 0 1 genus 0 475 844 Wolinella succinogenes species 1 1 209 0 5370 21 Helicobacter 12 genus Helicobacter mustelae 1 species 217 0 356 0 657 213 species 1 Helicobacter cinaedi 76936 0 294 Helicobacter typhlonius 1 species species 1 Helicobacter acinonychis 0 137 212 138563 0 430 1 species Helicobacter cetorum 0 2140 210 Helicobacter pylori species 1 species 1 Helicobacter felis 0 176 214 0 213 37372 Helicobacter bilis species 1 1591088 0 278 Helicobacter himalayensis 1 species 1 species Helicobacter hepaticus 32025 0 326 2593540 342 0 1 no rank 0 342 222136 Helicobacter sp. MIT 01-6242 species 1 1 202261 0 28221 516 Deltaproteobacteria class 126 653 Desulfovibrionales 25 order 1 213115 60360 0 1 213116 0 4946 104 Desulfomicrobiaceae 4 family genus 3 29 Desulfomicrobium 0 4842 898 1 Desulfomicrobium baculatum 1 species 899 0 2580 132132 0 2233 1 species Desulfomicrobium orale 1 213117 0 837 4 Desulfohalobiaceae 2 family 45662 833 0 1 genus 45663 0 833 Desulfohalobium retbaense 1 species Desulfovibrionaceae 438 family 18 1 0 53924 194924 5 Lawsonia genus 2 1 0 725 41707 29546 0 720 1 species Lawsonia intracellularis 2794998 0 1470 1 genus Desulfovibrio salexigens species 1 1470 0 880 38903 0 872 1 genus 9 291 Desulfovibrio Candidatus Desulfovibrio trichonymphae 1 species 1725232 0 998 Desulfovibrio piger species 1 7711 0 901 Desulfovibrio alaskensis species 1 0 2227 58180 species 1 Desulfovibrio vulgaris 9524 0 881 7001 0 876 Desulfovibrio desulfuricans species 1 Desulfovibrio fairfieldensis species 1 0 4919 44742 184917 4151 0 1 species Desulfovibrio magneticus 2593640 2081 0 1 no rank 2081 0 631220 species 1 Desulfovibrio sp. G11 2582840 2765 0 1 genus 873 0 2765 Desulfovibrio africanus 1 species genus 4 Pseudodesulfovibrio 127 0 9623 2035811 1 Pseudodesulfovibrio indicus 1 species 1716143 0 4452 1 species Pseudodesulfovibrio aespoeensis 182210 3468 0 57320 0 1576 1 species Pseudodesulfovibrio profundus 4 order Desulfarculales 32 453227 3740 0 1 3 family Desulfarculaceae 58 453228 3708 0 1 67 Desulfarculus 2 genus 1 453229 0 3650 1 species Desulfarculus baarsii 453230 3583 0 1 213462 4277 0 Syntrophobacterales 38 9 order family 5 6 Syntrophaceae 0 2655 213468 1 2357 752 0 1 genus Desulfomonile tiedjei species 1 752 0 2358 genus 1 914 0 60892 0 914 60893 Desulfobacca acetoxidans species 1 43773 983 0 1 2 genus 3 Syntrophus 980 0 316277 Syntrophus aciditrophicus species 1 3 family Syntrophobacteraceae 13 213465 1584 0 1 1571 0 29526 1 genus 2 Syntrophobacter 11 119484 1560 0 Syntrophobacter fumaroxidans 1 species 3 Desulfurellales 5 order 1 213113 745 0 742 0 117942 family 4 Desulfurella 15 genus 2 1 382 0 33001 Desulfurella acetivorans 1 species 33002 367 0 0 360 84404 1 genus 2 Hippea 2 84405 0 358 Hippea maritima 1 species 0 41815 69541 1 order 24 Desulfuromonadales 613 213421 13840 0 1 9 family 240 Desulfuromonadaceae 55 Pelobacter genus 5 1 8323 0 18 19 1658 0 Pelobacter carbinolicus 1 species 0 1630 29542 species 1 Pelobacter acetylenicus Pelobacter propionicus species 1 0 3232 29543 0 1748 2620299 no rank 1 species 1 Pelobacter sp. SFB93 0 1748 1842532 Desulfuromonas 29 genus 3 1 0 5277 890 2614637 2696 0 1 no rank 1823759 0 2696 1 species Desulfuromonas sp. DDH964 Desulfuromonas soudanensis 1 species 1603606 0 2552 213422 0 27362 1 14 family Geobacteraceae 206 1 25013 0 28231 431 Geobacter genus 11 1340425 0 2568 Geobacter anodireducens 1 species Geobacter lovleyi species 1 2551 0 313985 351604 0 2013 1 species Geobacter uraniireducens 1 species Geobacter sulfurreducens 35554 2342 0 225194 0 2505 1 species Geobacter bemidjiensis Geobacter daltonii species 1 1663 0 1203471 6047 0 2627627 no rank 2 0 3371 443143 Geobacter sp. M18 species 1 Geobacter sp. M21 1 species 443144 0 2676 28232 0 2089 Geobacter metallireducens 1 species 1 species Geobacter pickeringii 345632 0 2804 0 2143 392332 1 genus 2 23 Geoalkalibacter 483547 2120 0 Geoalkalibacter subterraneus 1 species 0 76566 29 1 order 38 1078 Myxococcales 3860 0 224462 suborder 3 1 224464 0 3860 35 Kofleriaceae 3 family genus 2 Haliangium 22 3825 0 162027 1 Haliangium ochraceum species 1 3803 0 80816 0 14337 80812 suborder 8 49 0 11289 1 5 family 112 Polyangiaceae genus 2 90 Sorangium 0 9036 39643 1 1 species Sorangium cellulosum 56 8946 0 Chondromyces 9 2 genus 1 50 0 2141 0 2132 52 species 1 Chondromyces crocatus family 3 Sandaracinaceae 51 3048 0 1055686 1 genus 2 28 Sandaracinus 2997 0 1055688 1 species 1 Sandaracinus amylolyticus 0 2969 927083 suborder 26 57291 0 80811 1 0 16398 39 301 Archangiaceae family 9 1 0 4355 42 Cystobacter 59 genus 2 4296 0 43 species 1 Cystobacter fuscus 1 47 0 4784 71 Archangium 2 genus 0 4713 48 Archangium gephyra species 1 Stigmatella 42 genus 2 1 0 3337 40 Stigmatella aurantiaca 1 species 41 3295 0 Melittangium 23 genus 2 1 3621 0 44 0 3598 83453 Melittangium boletus species 1 2088 0 1524213 1 family 3 Vulgatibacteraceae 22 1 1524214 0 2066 39 Vulgatibacter 2 genus 2027 0 1391653 species 1 Vulgatibacter incomptus 127 Anaeromyxobacteraceae family 5 1 11559 0 1524215 353 Anaeromyxobacter genus 4 1 0 11432 161492 Anaeromyxobacter dehalogenans 1 species 161493 5259 0 5820 0 2620896 no rank 2 2622 0 404589 Anaeromyxobacter sp. Fw109-5 species 1 447217 0 3198 1 species Anaeromyxobacter sp. K 1 31 27246 0 Myxococcaceae 148 9 family Corallococcus 165 genus 3 1 0 8968 83461 1 species Corallococcus coralloides 184914 4828 0 0 3975 35 Myxococcus macrosporus species 1 1 32 0 18130 894 Myxococcus 5 genus 3214 0 83455 Myxococcus stipitatus species 1 0 3577 1297742 species 1 Myxococcus hansupus 0 7558 33 Myxococcus fulvus species 1 Myxococcus xanthus species 1 0 2887 34 order 20 138 Desulfobacterales 0 14242 213118 1 53 Desulfobulbaceae family 9 1 0 6573 213121 53318 715 0 1 2 genus 12 Desulfocapsa Desulfocapsa sulfexigens 1 species 65555 703 0 2150 0 427922 1 genus 2 17 Desulfurivibrio 427923 0 2133 1 species Desulfurivibrio alkaliphilus Desulfotalea 2 2 genus 1 109168 0 939 Desulfotalea psychrophila 1 species 84980 937 0 1 893 0 2716 13 Desulfobulbus 2 genus Desulfobulbus sp. ORNL 1 species 1986146 2703 0 Desulfobacteraceae 114 10 family 1 213119 0 7531 1 0 3413 896 24 Desulfococcus genus 3 1550 0 897 species 1 Desulfococcus multivorans Desulfococcus oleovorans 1 species 181663 1839 0 Desulfatibacillum 4 2 genus 1 218207 0 1776 259354 1772 0 1 species Desulfatibacillum alkenivorans 1 2295 1454 0 Desulfobacterium 5 2 genus 1449 0 2296 species 1 Desulfobacterium autotrophicum 774 0 28222 1 genus 2 5 Desulfobacula Desulfobacula toluolica 1 species 28223 0 769 class 6 Zetaproteobacteria 14 0 2416 580370 1 0 2402 580371 1 order 5 Mariprofundales 28 2374 0 580372 1 family 4 Mariprofundaceae 33 2341 0 377315 1 genus 3 Mariprofundus 5 0 963 1921086 Mariprofundus aestuarium species 1 0 1373 1921087 species 1 Mariprofundus ferrinatatus 1 1236 0 1279398 2415 Gammaproteobacteria 877 class 1 29271 0 135623 Vibrionales 9 order 43 238 Vibrionaceae family 42 1 0 29262 641 0 2437 657 1 genus 4 Photobacterium 11 624 0 74109 Photobacterium profundum species 1 38293 783 0 Photobacterium damselae 1 species 1019 0 1295392 Photobacterium gaetbulicola species 1 2 Grimontia genus 2 1 483 0 246861 species 1 Grimontia hollisae 481 0 673 1 511678 0 1239 Aliivibrio 3 4 genus species 1 Aliivibrio fischeri 522 0 668 80852 401 0 Aliivibrio wodanis 1 species 40269 0 313 Aliivibrio salmonicida 1 species 0 24496 662 1 genus 30 Vibrio 458 1891919 0 520 1 species group 1 species Vibrio tubiashii 29498 520 0 species 1 Vibrio scophthalmi 0 636 45658 Vibrio cholerae species 1 0 1447 666 1 species Vibrio vulnificus 672 0 2153 species 1 Vibrio nigripulchritudo 564 0 28173 1 species Vibrio tasmaniensis 212663 296 0 Vibrio fluvialis 1 species 676 1280 0 Vibrio mimicus 1 species 674 0 1256 Vibrio furnissii 1 species 29494 0 916 Vibrio qinghaiensis species 1 0 493 2025808 0 1108 55601 species 1 Vibrio anguillarum 10 species group 717610 8614 0 0 442 766224 Vibrio jasicida species 1 species 1 Vibrio rotiferianus 409 0 190895 1 species Vibrio natriegens 691 1081 0 697 0 669 species 1 Vibrio harveyi Vibrio alginolyticus species 1 1703 0 663 696485 664 0 Vibrio owensii 1 species 680 0 1327 Vibrio campbellii 1 species 1094 0 670 Vibrio parahaemolyticus species 1 0 1197 2315253 species subgroup 2 386 0 150340 species 1 Vibrio antiquarius 50719 811 0 1 species Vibrio diabolicus 1435069 613 0 Vibrio tritonius 1 species 2614977 1145 0 2 no rank species 1 Vibrio sp. 2521-89 0 555 2014742 Vibrio sp. EJY3 1 species 1116375 590 0 1 species Vibrio gazogenes 687 0 737 621 0 553239 species 1 Vibrio breoganii 1 species Vibrio hyugaensis 1534743 0 308 species 1 Vibrio tapetis 0 415 52443 190893 0 916 Vibrio coralliilyticus 1 species 2042066 369 0 1 genus Paraphotobacterium marinum species 1 369 0 1755811 52 Thiotrichales 32 order 1 72273 9402 0 34064 0 5727 1 14 family 31 Francisellaceae 1869285 0 175 1 genus 0 175 594679 Allofrancisella guangzhouensis species 1 1 0 5521 262 Francisella 23 genus 12 species 1 Francisella sp. TX077310 0 362 573570 species 1 Francisella persica 450 0 954 1542390 0 548 Francisella sp. CA97-1460 1 species 244 0 622488 Francisella hispaniensis species 1 species 1 Francisella tularensis 1061 0 263 Francisella halioticida species 1 0 407 549298 2 no rank 2610885 0 503 0 240 1547445 species 1 Francisella sp. FSC1006 0 263 475375 Francisella sp. MA067296 species 1 species 1 Francisella philomiragia 1020 0 28110 573569 0 276 Francisella sp. TX077308 1 species 627 0 657445 Francisella noatunensis species 1 1 135617 0 633 Thiotrichaceae 5 3 family genus 1 347 0 1021 288004 347 0 Beggiatoa leptomitoformis 1 species 0 281 40751 genus 1 Thioploca ingrica 1 species 40754 281 0 2990 0 135616 1 family 14 Piscirickettsiaceae 34 491 0 933 1 genus 3 4 Thiomicrospira 0 277 92245 species 1 Thiomicrospira aerophila 1 species Thiomicrospira cyclica 147268 210 0 1 708 0 34067 10 Cycloclasticus genus 4 1329899 0 251 Cycloclasticus zancles 1 species 447 0 2621467 no rank 2 728003 0 268 1 species Cycloclasticus sp. PY97N species 1 Cycloclasticus sp. P1 179 0 385025 26 Methylophaga genus 3 1 0 774 40222 1 species Methylophaga frappieri 754477 250 0 Methylophaga nitratireducenticrescens species 1 498 0 754476 1237 0 517 1 genus 1238 517 0 Piscirickettsia salmonis 1 species 1 0 466 28884 Hydrogenovibrio 1 genus 2 39765 0 465 Hydrogenovibrio crunogenus 1 species 135618 8467 0 1 12 order Methylococcales 174 1 403 8293 0 102 Methylococcaceae 11 family genus 1 638 0 762296 species 1 Methylovulum psychrotolerans 0 638 1704499 2 genus 2 Methylomicrobium 39773 0 959 1 1 species Methylomicrobium alcaliphilum 271065 957 0 0 1410 413 1 genus 2 28 Methylococcus 1382 0 414 Methylococcus capsulatus species 1 genus 5 Methylomonas 62 0 5184 416 1 species 1 Methylomonas methanica 1492 0 421 1082 0 702114 species 1 Methylomonas koyamae 1041 0 1538553 Methylomonas denitrificans species 1 0 1507 2608980 no rank 1 Methylomonas sp. DH-1 1 species 1727196 0 1507 4 order 6 Nevskiales 1775403 1185 0 1 family 2 1157 0 2689614 0 1157 469322 1 genus 2 4 Steroidobacter 465721 0 1153 1 species Steroidobacter denitrificans Sinobacteraceae 1 family 568386 22 0 order 2 0 233 135615 Cardiobacteriaceae 2 2 family 1 868 0 233 genus 1 231 0 869 Dichelobacter nodosus species 1 231 0 870 1 17003 0 135625 21 Pasteurellales order 32 712 16982 0 1 31 family Pasteurellaceae 1156 1 416916 1477 0 Aggregatibacter 42 3 genus 714 0 714 Aggregatibacter actinomycetemcomitans species 1 Aggregatibacter aphrophilus species 1 721 0 732 2 genus 4 Glaesserella 2094023 0 918 1 0 914 738 Glaesserella parasuis species 1 genus 6 Haemophilus 19 3434 0 724 1 [Haemophilus] ducreyi 1 species 730 0 396 1379 0 727 species 1 Haemophilus influenzae 1 no rank 2609962 0 303 712310 303 0 Haemophilus sp. oral taxon 036 1 species 729 896 0 Haemophilus parainfluenzae 1 species 249188 441 0 1 species Haemophilus pittmaniae 713 2406 0 1 5 genus Actinobacillus 13 0 628 718 Actinobacillus equuli species 1 650 0 67854 species 1 Actinobacillus succinogenes species 1 Actinobacillus pleuropneumoniae 0 617 715 0 498 716 species 1 Actinobacillus suis 599 0 697331 genus 1 [Mannheimia] succiniciproducens 1 species 157673 599 0 4 genus 14 Mannheimia 75984 0 1928 1 no rank 1 467 0 2645054 1432056 467 0 Mannheimia sp. USDA-ARS-USMARC-1261 1 species Mannheimia varigena 1 species 85404 0 790 Mannheimia haemolytica species 1 657 0 75985 2 genus Bibersteinia 4 476528 2078 0 1 Bibersteinia trehalosi species 1 2074 0 47735 genus 2 Histophilus 1 988 0 214906 1 Histophilus somni 1 species 731 0 987 1 Gallibacterium 2 genus 1 155493 594 0 0 593 750 Gallibacterium anatis species 1 3 genus 6 Pasteurella 745 1404 0 1 747 0 1139 1 species Pasteurella multocida 1 species Pasteurella dagmatis 754 0 259 2 no rank 33811 0 2793 83406 1179 0 1 species gamma proteobacterium HdN1 0 1614 1248727 endosymbiont of unidentified scaly snail isolate Monju species 1 54 order Xanthomonadales 899 135614 0 92416 1 1 16910 0 1775411 Rhodanobacteraceae 277 family 14 2560 0 323413 1 genus 2 Dokdonella 41 Dokdonella koreensis 1 species 323415 0 2519 129 Dyella genus 4 1 8007 0 231454 1 species Dyella thiooxydans 445710 2748 0 2178 0 1379159 species 1 Dyella jiangningensis Dyella japonica species 1 0 2952 231455 1 75309 0 2480 28 Rhodanobacter 2 genus species 1 Rhodanobacter denitrificans 0 2452 666685 1 242605 1242 0 12 Luteibacter 2 genus 1 species Luteibacter rhizovicinus 242606 0 1230 genus 1 785 0 2233801 785 0 2021234 species 1 Xanthomonadales bacterium D13 1 0 1559 70411 7 Frateuria genus 2 species 1 Frateuria aurantia 0 1552 81475 39 family 940 Xanthomonadaceae 32033 0 74607 1 1 0 789 2370 Xylella 2 genus 2 Xylella fastidiosa 1 species 2371 0 787 688 Stenotrophomonas genus 9 1 25476 0 40323 Stenotrophomonas rhizophila species 1 0 1780 216778 0 1491 83617 Stenotrophomonas nitritireducens species 1 6945 0 196198 no rank 4 species 1 Stenotrophomonas sp. LM091 0 2053 1904944 species 1 Stenotrophomonas sp. WZN-1 1783 0 2005046 Stenotrophomonas sp. MYb57 1 species 1827305 0 1659 species 1 Stenotrophomonas sp. KCTC 12332 0 1450 1793721 128780 3019 0 1 species Stenotrophomonas acidaminiphila 11553 0 995085 species group 1 species 1 Stenotrophomonas maltophilia 11553 0 40324 178 Lysobacter 5 genus 1 68 0 10275 84531 0 2416 Lysobacter antibioticus 1 species 1 species Lysobacter gummosus 262324 0 2319 1 species Lysobacter capsici 435897 0 2845 Lysobacter enzymogenes 1 species 69 2517 0 1 83614 0 1331 Luteimonas 5 2 genus 1 species Luteimonas sp. 100111 2006110 0 1326 1 0 29656 338 Xanthomonas 1695 genus 17 0 1041 56459 species 1 Xanthomonas vasicola 442694 0 1496 1 species Xanthomonas perforans Xanthomonas vesicatoria species 1 0 1384 56460 643453 4956 0 2 species group 346 0 3540 1 species Xanthomonas citri 1416 0 366648 Xanthomonas fuscans species 1 347 2726 0 1 species Xanthomonas oryzae 53413 1018 0 Xanthomonas axonopodis 1 species 29447 947 0 Xanthomonas albilineans 1 species Xanthomonas phaseoli 1 species 1985254 0 883 366650 0 1063 1 species Xanthomonas alfalfae 48664 788 0 Xanthomonas fragariae 1 species 0 2927 343 species 1 Xanthomonas translucens Xanthomonas euvesicatoria species 1 0 1070 456327 species 1 Xanthomonas campestris 3886 0 339 0 2474 56458 species 1 Xanthomonas sacchari 1 species Xanthomonas hortorum 56454 0 1302 6140 0 83618 1 genus 3 89 Pseudoxanthomonas Pseudoxanthomonas suwonensis 1 species 314722 0 4329 1 species Pseudoxanthomonas spadix 415229 0 1722 11 Legionellales 19 order 1 118969 0 5573 118968 0 506 1 4 family 20 Coxiellaceae 377 0 776 genus 2 0 295 777 species 1 Coxiella burnetii no rank 1 82 0 2676648 325775 82 0 1 species Coxiella endosymbiont of Amblyomma americanum 0 109 134284 no rank 1 Coxiella-like endosymbiont 1 species 1592897 0 109 14 family Legionellaceae 12 444 0 5056 1 1 445 0 4768 24 Legionella 12 genus 29423 295 0 1 species Legionella oakridgensis Legionella sainthelensi species 1 304 0 28087 1 species Legionella endosymbiont of Polyplax serrata 2005262 81 0 Legionella spiritensis 1 species 452 0 507 species 1 Legionella longbeachae 396 0 450 Legionella pneumophila 1 species 446 1559 0 256 0 96230 Legionella fallonii species 1 species 1 Legionella waltersii 300 0 66969 1 species Legionella hackeliae 449 0 340 Legionella lansingensis species 1 244 0 45067 1867846 462 0 1 species Legionella clemsonensis 1 genus 465 0 276 451 0 276 1 species Tatlockia micdadei Alteromonadales 151 104 order 1 135622 51477 0 13 Moritellaceae family 3 1 0 496 267891 0 483 58050 1 genus 2 1 Moritella 1 species Moritella viscosa 80854 0 482 763 0 267894 1 family 3 13 Psychromonadaceae 2 genus 67572 750 0 1 no rank 2614957 0 385 0 385 314282 species 1 Psychromonas sp. CNPT3 1 species Psychromonas ingrahamii 357794 0 365 0 3154 267889 1 family 9 Colwelliaceae 1 1 28228 0 2711 Colwellia 7 6 genus 0 1489 196834 no rank 3 58049 518 0 Colwellia sp. MT41 1 species 476 0 1816219 species 1 Colwellia sp. PAMC 21821 1 species Colwellia sp. PAMC 20917 1816218 495 0 556 0 1967665 species 1 Colwellia beringensis Colwellia psychrerythraea 1 species 28229 0 659 442 0 1518149 1 genus 2 2 Thalassotalea Thalassotalea crassostreae 1 species 1763536 440 0 1 1401 0 267893 8 Idiomarinaceae family 6 genus 5 2 Idiomarina 1393 0 135575 1 897 0 2614829 no rank 2 0 499 2055892 Idiomarina sp. X4 species 1 Idiomarina sp. OT37-5b species 1 0 398 2100422 Idiomarina loihiensis 1 species 135577 283 0 Idiomarina piscisalsi species 1 0 211 1096243 25 family Shewanellaceae 94 267890 13326 0 1 1 13232 0 22 Shewanella 192 genus 24 Shewanella psychrophila species 1 532 0 225848 271097 0 702 1 species Shewanella sediminis Shewanella frigidimarina species 1 552 0 56812 333 0 192073 species 1 Shewanella denitrificans 648 0 60961 Shewanella woodyi species 1 553 0 271098 Shewanella halifaxensis species 1 1 species Shewanella piezotolerans 404011 425 0 196818 2627 0 6 no rank 60481 333 0 Shewanella sp. MR-7 1 species Shewanella sp. WE21 1 species 2029986 640 0 293 0 351745 Shewanella sp. W3-18-1 species 1 Shewanella sp. Pdp11 species 1 568 0 2059264 Shewanella sp. MR-4 1 species 60480 360 0 species 1 Shewanella sp. ANA-3 433 0 94122 Shewanella bicestrii 1 species 2018305 0 277 Shewanella amazonensis 1 species 60478 0 927 1 species Shewanella baltica 62322 0 1510 Shewanella oneidensis species 1 0 501 70863 0 363 93973 Shewanella japonica species 1 species 1 Shewanella loihica 0 1033 359303 1 species Shewanella pealeana 70864 330 0 0 392 24 species 1 Shewanella putrefaciens 573 0 260364 Shewanella marisflavi species 1 762 0 60217 species 1 Shewanella violacea Ferrimonadaceae 6 family 3 1 0 1725 267892 Ferrimonas 36 2 genus 1 44011 0 1719 1683 0 44012 species 1 Ferrimonas balearica 55 Pseudoalteromonadaceae family 25 1 9568 0 267888 24 genus 123 Pseudoalteromonas 53246 9513 0 1 species 1 Pseudoalteromonas tunicata 474 0 314281 399 0 43657 Pseudoalteromonas luteoviolacea species 1 170 0 176102 species 1 Pseudoalteromonas agarivorans Pseudoalteromonas arctica species 1 0 235 394751 247523 311 0 Pseudoalteromonas aliena 1 species 0 359 267375 Pseudoalteromonas marina species 1 species 1 Pseudoalteromonas haloplanktis 336 0 228 species 1 Pseudoalteromonas nigrifaciens 0 409 28109 1 species Pseudoalteromonas espejiana 28107 669 0 0 462 43658 species 1 Pseudoalteromonas rubra 421 0 161398 Pseudoalteromonas phenolica species 1 1 species Pseudoalteromonas translucida 166935 316 0 43659 0 344 1 species Pseudoalteromonas tetraodonis Pseudoalteromonas atlantica 1 species 288 903 0 5 no rank 194690 0 1803 234831 0 246 1 species Pseudoalteromonas sp. SM9913 1720343 0 354 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 species Pseudoalteromonas sp. 13-15 1 species 1761891 0 440 Pseudoalteromonas sp. Bsw20308 1 species 283699 0 404 359 0 1514074 Pseudoalteromonas sp. NC201 species 1 species 1 Pseudoalteromonas issachenkonii 269 0 152297 0 350 43662 Pseudoalteromonas piscicida species 1 711 0 298657 Pseudoalteromonas spongiae species 1 1348114 0 449 1 species Pseudoalteromonas piratica 138 Alteromonadaceae 29 family 1 72275 20893 0 96 Marinobacter 10 genus 1 2742 11184 0 0 2040 2743 Marinobacter hydrocarbonoclasticus species 1 species 1 Marinobacter salinus 0 810 1874317 3 no rank 83889 0 3954 species 1 Marinobacter sp. LQ44 0 1937 1749259 species 1 Marinobacter sp. BSs20148 0 842 490759 1 species Marinobacter sp. CP1 1671721 0 1175 Marinobacter similis 1 species 1420916 0 1187 species 1 Marinobacter psychrophilus 703 0 330734 1033846 1085 0 1 species Marinobacter adhaerens species 1 Marinobacter salarius 0 1309 1420917 genus 2 0 951 89404 1 species Glaciecola nitratireducens 300231 0 535 2618684 0 416 1 no rank 1 species Glaciecola sp. 4H-3-7+YE-5 983545 0 416 1 0 698 1621534 9 Paraglaciecola genus 2 species 1 Paraglaciecola psychrophila 689 0 326544 Lacimicrobium 13 2 genus 1 1751872 1582 0 1526571 1569 0 Lacimicrobium alkaliphilum 1 species 261825 0 803 1 2 genus Agarivorans 42 species 1 Agarivorans gilvus 0 761 680279 87 Alteromonas 10 genus 1 226 0 5537 species 1 Alteromonas stellipolaris 0 785 233316 species 1 Alteromonas mediterranea 0 1162 314275 252 0 715451 Alteromonas naphthalenivorans species 1 3 no rank 2614992 1134 0 species 1 Alteromonas sp. Mac1 0 633 1777491 2058133 222 0 Alteromonas sp. MB-3u-76 1 species Alteromonas sp. RW2A1 species 1 0 279 1917158 species 1 Alteromonas australica 373 0 589873 species 1 Alteromonas macleodii 0 1062 28108 0 682 287094 species 1 Alteromonas addita order 244 Enterobacterales 1740 0 665859 91347 1 1903412 0 14577 1 14 family 35 Hafniaceae 1 0 2200 568 85 Hafnia genus 3 1 species Hafnia alvei 569 1539 0 576 0 2621980 no rank 1 Hafnia sp. CBA7124 species 1 0 576 1848580 1 635 0 11373 Edwardsiella 732 8 genus 67780 1362 0 Edwardsiella ictaluri 1 species 1821960 1256 0 Edwardsiella anguillarum 1 species Edwardsiella hoshinae species 1 0 1316 93378 species 1 Edwardsiella tarda 2535 0 636 1479 0 1263550 species 1 Edwardsiella piscicida 0 2693 2676541 no rank 2 1 species Edwardsiella sp. LADL05-105 1650654 1233 0 Edwardsiella sp. EA181011 1 species 1578828 0 1460 224 Obesumbacterium genus 2 1 969 0 82982 0 745 82983 Obesumbacterium proteus species 1 1 0 25746 1903410 Pectobacteriaceae 118 family 20 1 122277 9190 0 Pectobacterium 285 6 genus 922 0 1905730 species 1 Pectobacterium parmentieri Pectobacterium polaris species 1 1759 0 2042057 species 1 Pectobacterium carotovorum 0 4580 554 Pectobacterium atrosepticum 1 species 29471 913 0 55208 0 731 1 species Pectobacterium wasabiae 2 genus Brenneria 15 71655 1369 0 1 1109412 0 1354 Brenneria goodwinii 1 species 1 11813 0 204037 437 Dickeya genus 6 Dickeya dadantii species 1 1721 0 204038 Dickeya fangzhongdai 1 species 1778540 1884 0 2803 0 204042 species 1 Dickeya zeae 3239 0 1089444 Dickeya solani species 1 species 1 Dickeya dianthicola 0 1729 204039 84565 3256 0 1 5 genus Sodalis 87 995 0 63612 species 1 Sodalis glossinidius Sodalis praecaptivus species 1 1201 0 1239307 Sodalis endosymbiont of Henestaris halophilus species 1 0 119 1929246 854 0 1486991 Candidatus Sodalis pierantonius species 1 family 118 Enterobacteriaceae 2776 522917 0 543 1 1 0 90051 570 Klebsiella 2437 genus 10 1463165 9478 0 Klebsiella quasipneumoniae 1 species 0 3958 2026240 Klebsiella quasivariicola species 1 13422 0 244366 species 1 Klebsiella variicola 4613 0 1134687 species 1 Klebsiella michiganensis 0 4000 548 species 1 Klebsiella aerogenes Klebsiella oxytoca species 1 0 11185 571 2 no rank 2608929 5016 0 1 species Klebsiella sp. LTGPAF-6F 1905288 0 2534 2482 0 1934254 Klebsiella sp. M5al species 1 573 35942 0 1 species Klebsiella pneumoniae genus 2 Cedecea 29 4704 0 158483 1 158822 4675 0 Cedecea neteri 1 species 6684 0 1330546 1 genus 3 Pluralibacter 53 0 2685 1334193 [Enterobacter] lignolyticus species 1 61647 0 3946 1 species Pluralibacter gergoviae 0 34 1048757 genus 1 Candidatus Moranella endobia 1 species 1048758 0 34 genus 4 Leclercia 177 5324 0 83654 1 2627398 0 3580 2 no rank 1698 0 1920116 species 1 Leclercia sp. LSNIH3 species 1 Leclercia sp. LSNIH1 0 1882 1920114 0 1567 83655 species 1 Leclercia adecarboxylata 36866 8845 0 5 no rank species 1 Enterobacteriaceae bacterium ENNIH1 1428 0 2066051 2344 0 693444 Enterobacteriaceae bacterium strain FGI 57 species 1 Enterobacteriaceae bacterium ENNIH2 1 species 1920109 1668 0 1608 0 891974 species 1 Plautia stali symbiont 1920128 0 1797 1 species Enterobacteriaceae bacterium ENNIH3 1 620 0 18446 Shigella 1337 4 genus 622 5819 0 1 species Shigella dysenteriae 0 4160 623 Shigella flexneri species 1 7130 0 2629414 no rank 1 0 7130 1813821 species 1 Shigella sp. PAMC 28760 41 Lelliottia genus 4 1 0 6384 1330545 Lelliottia jeotgali species 1 1532 0 1907578 69220 2435 0 1 species Lelliottia nimipressuralis 61646 2376 0 1 species Lelliottia amnigena genus 5 Escherichia 913 116750 0 561 1 1499973 0 2162 1 species Escherichia marmotae 1 species Escherichia albertii 208962 6634 0 562 0 102880 1 species Escherichia coli species 1 Escherichia fergusonii 0 4161 564 Salmonella 126 3 genus 1 590 0 17430 species 1 Salmonella bongori 0 1426 54736 0 15878 28901 Salmonella enterica species 1 Citrobacter 1688 14 genus 1 544 0 116440 1 species Citrobacter rodentium 67825 1844 0 2 no rank 2644389 5288 0 0 2292 1920110 species 1 Citrobacter sp. CFNIH10 1702170 2996 0 1 species Citrobacter sp. FDAARGOS_156 Citrobacter amalonaticus 1 species 35703 0 4715 1344959 99185 0 7 species group 50851 0 546 species 1 Citrobacter freundii 2077147 3613 0 1 species Citrobacter freundii complex sp. CFNIH3 67827 0 4405 Citrobacter werkmanii 1 species 0 12124 2077148 Citrobacter freundii complex sp. CFNIH4 species 1 2066049 1484 0 Citrobacter freundii complex sp. CFNIH2 1 species 6290 0 57706 Citrobacter braakii species 1 Citrobacter freundii complex sp. CFNIH9 species 1 20418 0 2077149 0 1867 67824 species 1 Citrobacter farmeri 0 1853 545 species 1 Citrobacter koseri 413496 0 12320 1 8 genus Cronobacter 268 413503 1517 0 1 species Cronobacter malonaticus 413501 1779 0 Cronobacter muytjensii 1 species 2583 0 28141 species 1 Cronobacter sakazakii species 1 Cronobacter universalis 0 1699 535744 0 1444 1163710 Cronobacter condimenti species 1 413497 1756 0 Cronobacter dublinensis 1 species species 1 Cronobacter turicensis 1274 0 413502 0 162 401618 genus 1 Candidatus Riesia pediculicola 1 species 401619 0 162 Kluyvera 1 2 genus 1 579 0 1578 0 1577 61648 Kluyvera intermedia species 1 191675 0 2314 18 no rank clade 18 2314 0 84563 genus 1 0 142 1906660 species 1 Candidatus Mikella endobia 142 0 1778264 140 0 1682492 genus 1 140 0 1410383 Candidatus Tachikawaea gelatinosa species 1 genus 1 0 125 1906659 1 species Candidatus Hoaglandella endobia 1778263 0 125 0 164 1906661 genus 1 1 species Candidatus Gullanella endobia 1070130 164 0 1906657 285 0 1 2 genus 1 Candidatus Doolittlea species 1 Candidatus Doolittlea endobia 284 0 1778262 clade 4 585 0 146507 134287 0 59 secondary endosymbiont of Heteropsylla cubana 1 species Candidatus Hamiltonella 2 genus 2 1 0 274 568987 Candidatus Hamiltonella defensa 1 species 138072 272 0 252 0 1199245 secondary endosymbiont of Ctenarytaina eucalypti species 1 199891 0 127 1 clade 1835721 0 127 1 species secondary endosymbiont of Trabutina mannipara clade 7 746 0 84564 1 203804 746 0 2 Candidatus Blochmannia 7 genus 275 0 711328 no rank 2 1505597 0 129 1 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1 species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 146 0 1 species Candidatus Blochmannia pennsylvanicus 101534 88 0 species 1 Candidatus Blochmannia floridanus 240 0 203907 Candidatus Blochmannia chromaiodes species 1 0 86 251542 Candidatus Blochmannia vafer species 1 55 0 251535 0 73516 547 1 genus 22 3415 Enterobacter 354276 0 54019 12 species group 1488 0 69218 Enterobacter cancerogenus species 1 0 2796 208224 species 1 Enterobacter kobei 2757714 4850 0 3 no rank 1 species Enterobacter cloacae complex bacterium 2027919 0 1618 2077137 0 1556 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 species Enterobacter cloacae complex sp. ECNIH7 1 species 1915310 0 1676 Enterobacter cloacae species 1 24282 0 550 0 9895 158836 1 species 3 5556 Enterobacter hormaechei 1 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 1812934 0 2673 subspecies 1 Enterobacter xiangfangensis 0 1666 1296536 61645 4974 0 Enterobacter asburiae 1 species 0 1471 299767 Enterobacter ludwigii species 1 Enterobacter cloacae complex 'Hoffmann cluster IV' species 1 0 4263 1812935 no rank 9 16082 0 2608935 Enterobacter sp. R4-368 species 1 1848 0 1166130 1 species Enterobacter sp. E20 1560339 1705 0 Enterobacter sp. CRENT-193 species 1 2229 0 2051905 species 1 Enterobacter sp. Crenshaw 1667 0 1977566 1643 0 1914861 Enterobacter sp. SA187 species 1 species 1 Enterobacter sp. 638 1196 0 399742 Enterobacter sp. HK169 species 1 0 1918 1868135 1827481 2565 0 Enterobacter sp. ODB01 1 species 1692238 0 1311 Enterobacter sp. FY-07 1 species 5 genus Kosakonia 55 1330547 7314 0 1 0 1761 1158459 Kosakonia sacchari species 1 497725 1382 0 1 species Kosakonia oryzae 283686 0 1971 1 species Kosakonia radicincitans Kosakonia cowanii species 1 2145 0 208223 5 Shimwellia genus 2 1 0 1389 1335483 species 1 Shimwellia blattae 1384 0 563 genus 1 0 97 409304 0 97 168169 Candidatus Ishikawaella capsulata species 1 30359 0 160674 1 genus 3 174 Raoultella 26657 0 54291 species 1 Raoultella ornithinolytica 1 species Raoultella planticola 575 3528 0 451511 1382 0 2 no rank Plesiomonas 27 2 genus 1 702 1382 0 1 species Plesiomonas shigelloides 703 0 1355 91 Erwiniaceae family 27 1 0 30258 1903409 25 Tatumella genus 2 1 747 0 82986 Tatumella citrea 1 species 53336 0 722 genus 1 0 2105 32199 9 0 2105 Buchnera aphidicola 1 species 2100764 0 3783 2 genus species 1 Pantoea gaviniae 0 1640 665914 0 2143 665913 Pantoea calida species 1 genus 11 Pantoea 611 15575 0 53335 1 1654067 0 2531 1 species group 2531 0 549 Pantoea agglomerans species 1 553 1347 0 1 species Pantoea ananatis 1 species Pantoea stewartii 66269 1062 0 1891675 991 0 Pantoea alhagi 1 species 3 no rank 2630326 0 4395 Pantoea sp. PSNIH1 species 1 1229 0 1484158 species 1 Pantoea sp. PSNIH2 0 1849 1484157 592316 0 1317 1 species Pantoea sp. At-9b Pantoea rwandensis 1 species 1076550 0 1055 262 0 1235990 Candidatus Pantoea carbekii species 1 470934 3321 0 Pantoea vagans 1 species 1 0 7743 551 Erwinia 304 genus 8 2622719 810 0 1 no rank 810 0 215689 Erwinia sp. Ejp617 species 1 species 1 Erwinia amylovora 0 829 552 1 species Erwinia tasmaniensis 338565 0 1335 Erwinia pyrifoliae 1 species 79967 0 1012 1345 0 1619313 species 1 Erwinia gerundensis 2020 0 182337 Erwinia billingiae species 1 species 1 Candidatus Erwinia sp. ErCipseudotaxifoliae 88 0 1922217 Wigglesworthia 4 2 genus 1 51228 0 214 species 1 Wigglesworthia glossinidia 0 210 51229 Morganellaceae 45 21 family 1 1903414 0 11987 4 genus 43 Providencia 586 0 2230 1 0 371 587 Providencia rettgeri species 1 Providencia alcalifaciens 1 species 126385 439 0 Providencia stuartii 1 species 588 0 1377 626 3051 0 1 6 genus 22 Xenorhabdus 1 species Xenorhabdus bovienii 40576 0 883 0 720 351671 Xenorhabdus doucetiae species 1 Xenorhabdus nematophila 1 species 628 0 593 1 species Xenorhabdus poinarii 40577 0 440 Xenorhabdus hominickii 1 species 351679 393 0 genus 1 0 268 637 species 1 Arsenophonus symbiont of Lipoptena fortisetosa 268 0 634113 583 0 1970 1 3 genus 124 Proteus 584 0 1350 Proteus mirabilis 1 species 0 496 585 Proteus vulgaris species 1 Morganella 136 2 genus 1 581 2343 0 Morganella morganii 1 species 582 2207 0 1 0 2080 29487 28 Photorhabdus genus 4 1 species Photorhabdus temperata 574560 463 0 Photorhabdus asymbiotica 1 species 291112 0 775 Photorhabdus luminescens species 1 814 0 29488 1903411 56608 0 1 39 family Yersiniaceae 236 3416 0 34037 1 genus 4 Rahnella 82 2635087 0 2147 2 no rank 1805933 0 1026 Rouxiella sp. ERMR1:05 1 species Rahnella sp. Y9602 1 species 741091 1121 0 Rahnella aquatilis species 1 1187 0 34038 1 629 0 10288 390 Yersinia 13 genus 29483 541 0 1 species Yersinia aldovae Yersinia enterocolitica species 1 0 1756 630 1 species Yersinia aleksiciae 263819 0 667 29484 1887 0 1 species Yersinia frederiksenii 631 0 349 1 species Yersinia intermedia species group 3 0 2261 1649845 632 0 585 Yersinia pestis 1 species 1 species Yersinia similis 367190 687 0 633 0 989 1 species Yersinia pseudotuberculosis Yersinia rohdei 1 species 29485 461 0 Yersinia ruckeri species 1 0 921 29486 2653513 322 0 1 no rank species 1 Yersinia sp. FDAARGOS_228 322 0 1839800 0 733 28152 Yersinia kristensenii species 1 1 613 39988 0 1800 Serratia 16 genus 615 0 9624 1 species Serratia marcescens 2104 0 61652 Serratia rubidaea species 1 82996 4269 0 1 species Serratia plymuthica species 1 Serratia fonticola 0 3207 47917 1 species Serratia proteamaculans 28151 0 1329 1 species Serratia ficaria 61651 0 2545 no rank 8 0 13250 2647522 Serratia sp. AS13 species 1 0 1032 768493 species 1 Serratia sp. FS14 2041 0 1327989 Serratia sp. MYb239 1 species 2033438 0 1825 Serratia sp. SCBI species 1 0 2153 488142 768490 0 1032 1 species Serratia sp. AS12 2145 0 671990 species 1 Serratia sp. FGI94 1758196 1907 0 Serratia sp. SSNIH1 1 species 1 species Serratia sp. ATCC 39006 104623 1115 0 Serratia liquefaciens species 1 0 1860 614 Chania 9 2 genus 1 1745211 0 1116 1107 0 1639108 species 1 Chania multitudinisentens Rouxiella 1 genus 1565532 28 0 Gibbsiella 7 2 genus 1 929812 0 1536 Gibbsiella quercinecans 1 species 929813 0 1529 2 family 1903416 0 644 644 0 82984 1 genus 2 10 Pragia 0 634 82985 Pragia fontium species 1 1 1706369 14152 0 Cellvibrionales 84 28 order 1706375 1479 0 1 7 family Spongiibacteraceae 10 genus 2 4 Oceanicoccus 626 0 1084558 1 0 622 716816 species 1 Oceanicoccus sagamiensis 630749 0 312 1 2 genus Spongiibacter 3 no rank 1 0 309 2631504 1620392 0 309 1 species Spongiibacter sp. IMCC21906 4 Zhongshania genus 2 1 0 531 1434050 527 0 1470434 Zhongshania aliphaticivorans species 1 1 1706372 1628 0 Halieaceae 29 4 family 1 0 1599 1217416 88 Halioglobus genus 3 species 1 Halioglobus japonicus 844 0 930805 Halioglobus pacificus 1 species 930806 667 0 1 1706373 3935 0 23 Microbulbiferaceae 5 family 48073 0 3912 1 4 genus Microbulbifer 20 1107 0 260552 species 1 Microbulbifer agarilyticus Microbulbifer thermotolerans species 1 1476 0 252514 Microbulbifer aggregans 1 species 1769779 0 1309 1706371 7026 0 1 11 family Cellvibrionaceae 29 genus 1 0 908 316625 86304 908 0 1 species Saccharophagus degradans Teredinibacter 5 genus 2 1 0 608 2425 603 0 2426 species 1 Teredinibacter turnerae 756 0 2036021 genus 1 Agarilytica rhodophyticola 1 species 1737490 0 756 Cellvibrio 14 genus 4 1 0 3561 10 2 no rank 2624793 0 2245 1987723 0 1495 1 species Cellvibrio sp. PSBB006 750 0 1945512 Cellvibrio sp. PSBB023 species 1 Cellvibrio japonicus species 1 1302 0 155077 genus 2 Simiduia 6 1164 0 447467 1 Simiduia agarivorans species 1 1158 0 447471 4399 0 118884 no rank 12 2 genus 655184 492 0 1705394 0 275 Candidatus Thioglobus autotrophicus 1 species 1 species Candidatus Thioglobus singularis 1427364 217 0 clade 1 233 0 198346 0 233 186490 species 1 Candidatus Baumannia cicadellinicola genus 2 7 Thiolapillus 1091 0 1608298 1 species 1 Thiolapillus brandeum 1084 0 1076588 32036 0 559 3 clade 113267 0 136 1 species Bathymodiolus septemdierum thioautotrophic gill symbiont 410330 0 285 Calyptogena okutanii thioautotrophic gill symbiont 1 species 1541743 0 138 1 genus 0 138 386487 Candidatus Ruthia magnifica species 1 349742 0 1132 1 2 genus 2 Sedimenticola Sedimenticola thiotaurini species 1 0 1130 1543721 genus 2 1 Pseudohongiella 0 892 1524249 1 1249552 0 891 1 species Pseudohongiella spirulinae 1 135624 54431 0 260 Aeromonadales 29 order family 28 Aeromonadaceae 586 0 54171 84642 1 1 225143 0 852 3 Oceanisphaera 3 genus 0 426 1416627 species 1 Oceanisphaera profunda 1903694 0 423 Oceanisphaera sp. AMac2203 1 species 21 Tolumonas 2 genus 1 43947 990 0 0 969 43948 species 1 Tolumonas auensis 1 0 2478 129577 20 Oceanimonas genus 2 1 no rank 2636315 2458 0 Oceanimonas sp. GK1 species 1 0 2458 511062 2981 0 347533 1 genus 2 51 Zobellella 347534 0 2930 1 species Zobellella denitrificans 3141 Aeromonas 18 genus 1 642 46284 0 648 0 1464 1 species Aeromonas caviae 651 0 1750 Aeromonas media 1 species species 1 Aeromonas schubertii 0 2071 652 0 1851 558964 Aeromonas aquatica species 1 Aeromonas salmonicida 1 species 645 0 3195 4320 0 654 species 1 Aeromonas veronii 644 0 10626 Aeromonas hydrophila 1 species Aeromonas rivipollensis 1 species 948519 2487 0 species 1 Aeromonas dhakensis 0 2137 196024 no rank 8 0 13242 257493 1380 0 1636607 species 1 Aeromonas sp. ASNIH2 1636606 1294 0 1 species Aeromonas sp. ASNIH1 Aeromonas sp. CA23 species 1 0 2085 2033032 Aeromonas sp. ASNIH5 species 1 1922 0 1758179 1322 0 1920107 species 1 Aeromonas sp. ASNIH7 species 1 Aeromonas sp. ASNIH3 0 1431 1636608 2033033 0 1541 1 species Aeromonas sp. CU5 1636609 0 2267 Aeromonas sp. ASNIH4 1 species 1 1692040 0 2946 60 Acidiferrobacterales 6 order 1 2886 0 1692041 54 Acidiferrobacteraceae family 5 31 Sulfuricaulis genus 2 1 1623 0 1744881 Sulfuricaulis limicola 1 species 1620215 0 1592 1 1209 0 1692042 37 Sulfurifustis genus 2 1675686 1172 0 1 species Sulfurifustis variabilis 4 order 60 Immundisolibacterales 1934945 2343 0 1 family 3 68 Immundisolibacteraceae 2283 0 1934946 1 2 genus 22 Immundisolibacter 1934947 2215 0 1 Immundisolibacter cernigliae 1 species 1810504 0 2193 5 order Orbales 1 1240482 908 0 1 1240483 0 907 1 4 family 11 Orbaceae 1193503 0 501 1 genus 1 species Gilliamella apicola 1196095 501 0 2 genus Frischella 3 1335631 395 0 1 1267021 392 0 Frischella perrara 1 species order 50 Chromatiales 574 0 37935 135613 1 0 1189 449719 family 2 Granulosicoccus 8 genus 2 1 1189 0 437504 1181 0 437505 species 1 Granulosicoccus antarcticus 4 family Halothiobacillaceae 26 255526 0 1739 1 109262 0 1713 1 3 genus Halothiobacillus 43 2636392 1035 0 1 no rank 0 1035 1860122 species 1 Halothiobacillus sp. LS2 species 1 Halothiobacillus neapolitanus 635 0 927 family 18 Ectothiorhodospiraceae 210 0 15667 72276 1 1713 0 85108 1 genus 2 Halorhodospira 8 1 species Halorhodospira halophila 1053 1705 0 Spiribacter 30 3 genus 1 1335745 0 1322 895 0 1335757 species 1 Spiribacter curvatus Spiribacter salinus species 1 397 0 1335746 1 1051 1642 0 Ectothiorhodospira 20 2 genus no rank 1 1622 0 2684909 0 1622 1442136 Ectothiorhodospira sp. BSL-9 species 1 2 genus 11 Acidihalobacter 1765964 1331 0 1 Acidihalobacter prosperus species 1 0 1320 160660 Alkalilimnicola 28 genus 2 1 0 1729 133193 1 species Alkalilimnicola ehrlichii 351052 1701 0 145 Thioalkalivibrio 6 genus 1 106633 7720 0 1068 0 2621013 no rank 1 0 1068 396595 Thioalkalivibrio sp. K90mix species 1 1033854 0 2591 Thioalkalivibrio sulfidiphilus 1 species Thioalkalivibrio versutus 1 species 106634 1778 0 species 1 Thioalkalivibrio nitratireducens 982 0 186931 1 species Thioalkalivibrio paradoxus 108010 0 1156 family 3 Wenzhouxiangellaceae 23 1591 0 1676141 1 2 genus Wenzhouxiangella 55 1676142 1568 0 1 1513 0 1579979 species 1 Wenzhouxiangella marina 2 family 1738654 951 0 1738655 951 0 1 2 genus Woeseia 4 Woeseia oceani 1 species 1548547 947 0 family 18 234 Chromatiaceae 0 13971 1046 1 82569 0 1880 1 no rank Chromatiaceae bacterium 2141T.STBD.0c.01a 1 species 1978339 1880 0 genus 2 42 Thiocystis 2041 0 13724 1 Thiocystis violascens 1 species 73141 0 1999 1 85072 2243 0 16 Allochromatium 2 genus 1049 2227 0 1 species Allochromatium vinosum Thiodictyon 31 genus 2 1 0 3046 53392 3015 0 1166950 Candidatus Thiodictyon syntrophicum species 1 1227 1057 0 1 4 genus 5 Nitrosococcus Nitrosococcus watsonii 1 species 473531 443 0 0 281 133539 Nitrosococcus halophilus species 1 0 328 1229 species 1 Nitrosococcus oceani 2 genus 20 Thioflavicoccus 156885 0 1369 1 0 1349 80679 Thioflavicoccus mobilis species 1 218 0 1980513 1 genus 2 3 Candidatus Nitrosoglobus 0 215 1630141 Candidatus Nitrosoglobus terrae species 1 2 genus Marichromatium 24 85076 1883 0 1 1859 0 37487 species 1 Marichromatium purpuratum 451214 2253 0 2 no rank 2253 0 1273155 1 genus 2 Thiohalobacter 41 585455 0 2212 1 species Thiohalobacter thiocyanaticus order 128 1365 Pseudomonadales 231917 0 72274 1 1 468 18466 0 76 Moraxellaceae 42 family 104 Psychrobacter 11 genus 1 497 2963 0 330922 0 240 Psychrobacter cryohalolentis 1 species Psychrobacter alimentarius 1 species 261164 437 0 334543 0 348 Psychrobacter arcticus 1 species 230 0 45610 species 1 Psychrobacter urativorans 6 no rank 196806 1604 0 1720344 364 0 Psychrobacter sp. AntiMn-1 1 species 571800 0 238 1 species Psychrobacter sp. G 1699624 0 316 1 species Psychrobacter sp. P11G5 1699622 0 305 Psychrobacter sp. P2G3 1 species 1 species Psychrobacter sp. DAB_AL43B 1028416 0 194 species 1 Psychrobacter sp. PRwf-1 0 187 349106 88 Moraxella 5 genus 1 475 0 2797 34062 0 1223 1 species Moraxella osloensis Moraxella ovis 1 species 29433 335 0 Moraxella bovoculi 1 species 386891 0 822 0 329 480 Moraxella catarrhalis species 1 1 469 0 12630 267 Acinetobacter 25 genus species 1 501 0 202950 strain 1 Acinetobacter sp. ADP1 0 501 62977 0 561 108981 species 1 Acinetobacter schindleri no rank 7 0 2526 196816 2079596 240 0 Acinetobacter sp. SWBY1 1 species species 1 Acinetobacter sp. ACNIH2 295 0 1758189 465 0 1407071 species 1 Acinetobacter sp. TGL-Y2 1608473 0 247 1 species Acinetobacter sp. NCu2D-2 Acinetobacter sp. LoGeW2-3 species 1 0 477 1808001 Acinetobacter sp. TTH0-4 species 1 439 0 1646498 1636603 363 0 Acinetobacter sp. ACNIH1 1 species 40215 0 424 Acinetobacter junii 1 species 1148157 0 518 Acinetobacter oleivorans 1 species 416 0 756892 Acinetobacter indicus species 1 1 species Acinetobacter equi 1324350 446 0 species 1 Acinetobacter johnsonii 0 338 40214 0 437 1789224 species 1 Acinetobacter larvae Acinetobacter haemolyticus 1 species 29430 364 0 5 species group 909768 0 4564 347 0 1785128 Acinetobacter lactucae species 1 species 1 Acinetobacter nosocomialis 0 571 106654 Acinetobacter pittii 1 species 48296 0 1171 0 1736 470 Acinetobacter baumannii species 1 471 0 739 Acinetobacter calcoaceticus 1 species 106648 0 511 Acinetobacter bereziniae 1 species Acinetobacter soli species 1 345 0 487316 species 1 Acinetobacter radioresistens 0 412 40216 1 135621 212086 0 Pseudomonadaceae 1519 85 family 307 0 1849530 genus 1 species 1 Oblitimonas alkaliphila 0 307 1697053 351 0 6221 3 subfamily Azotobacter 66 genus 3 1 0 6221 352 354 2378 0 1 species Azotobacter vinelandii 353 0 3777 1 species Azotobacter chroococcum 204039 0 286 1 genus 80 7499 Pseudomonas species group 2 0 12918 136846 74829 1612 0 1 species Pseudomonas balearica 578833 11306 0 1 species subgroup Pseudomonas stutzeri species 1 11306 0 316 1150 0 237609 species 1 Pseudomonas alkylphenolica species group 9 26840 0 136843 species 1 Pseudomonas corrugata 0 1108 47879 species 1 Pseudomonas veronii 1208 0 76761 200451 1196 0 1 species Pseudomonas poae 0 1649 200450 species 1 Pseudomonas trivialis 294 14828 0 1 species Pseudomonas fluorescens 75612 1158 0 Pseudomonas mandelii 1 species 1 species Pseudomonas azotoformans 47878 0 2320 76758 0 1123 1 species Pseudomonas orientalis Pseudomonas protegens 1 species 380021 2250 0 Pseudomonas psychrotolerans species 1 2255 0 237610 species 1 Pseudomonas versuta 0 974 1788301 2 species group 136842 0 9602 species 1 Pseudomonas chlororaphis 0 7569 587753 species 1 Pseudomonas fragi 2033 0 296 0 41963 196821 no rank 30 0 1895 1283291 Pseudomonas sp. URMO17WK12:I11 species 1 Pseudomonas sp. DR 5-09 1 species 1534110 0 1355 1338689 1256 0 Pseudomonas sp. JY-Q 1 species 1500687 1825 0 Pseudomonas sp. St29 1 species 1259844 1434 0 Pseudomonas sp. FGI182 1 species Pseudomonas sp. S-6-2 1 species 1931241 1404 0 2083054 813 0 Pseudomonas sp. LG1D9 1 species 2067572 1461 0 Pseudomonas sp. NC02 1 species 2018067 1113 0 1 species Pseudomonas sp. FDAARGOS_380 1296 0 2083051 species 1 Pseudomonas sp. SWI6 2069256 1375 0 1 species Pseudomonas sp. XWY-1 Pseudomonas sp. ATCC 13867 1 species 1294143 2304 0 Pseudomonas sp. MYb193 species 1 0 980 1827300 species 1 Pseudomonas sp. LH1G9 1256 0 2083055 Pseudomonas sp. M30-35 species 1 633 0 1981174 2083053 1265 0 1 species Pseudomonas sp. SWI44 Pseudomonas sp. StFLB209 species 1 1830 0 1028989 1564 0 1898684 Pseudomonas sp. LPH1 species 1 1 species Pseudomonas sp. SWI36 2083052 1499 0 2049589 782 0 Pseudomonas sp. HLS-6 1 species 0 1903 1500686 Pseudomonas sp. Os17 species 1 Pseudomonas sp. UW4 species 1 1099 0 1207075 1611770 1472 0 Pseudomonas sp. MRSN12121 1 species 1 species Pseudomonas sp. TCU-HL1 1856685 0 2186 Pseudomonas sp. PONIH3 1 species 1636610 0 1556 0 1344 1415630 Pseudomonas sp. TKP species 1 1930532 1169 0 Pseudomonas sp. CC6-YY-74 1 species 1659194 897 0 1 species Pseudomonas sp. GR 6-02 Pseudomonas sp. CCOS 191 species 1 0 1647 1649877 Pseudomonas sp. VLB120 species 1 0 1350 69328 Pseudomonas frederiksbergensis 1 species 104087 0 2801 0 2461 198620 Pseudomonas koreensis species 1 species group 8 19031 0 136849 0 1310 33069 species 1 Pseudomonas viridiflava Pseudomonas cichorii 1 species 36746 0 1242 Pseudomonas avellanae species 1 1209 0 46257 8133 0 251695 species subgroup 1 1 species Pseudomonas syringae 317 0 8133 1 species Pseudomonas syringae group genomosp. 3 251701 2238 0 no rank 1 963 0 2775504 species 1 Pseudomonas sp. Lz4W 963 0 1206777 0 3936 251698 species subgroup 2 0 1841 47877 Pseudomonas amygdali species 1 species 1 Pseudomonas savastanoi 2095 0 29438 species 1 Pseudomonas parafulva 0 2254 157782 6 species group 136841 27139 0 53408 4816 0 1 species Pseudomonas citronellolis species 1 Pseudomonas mendocina 7429 0 300 8509 0 287 Pseudomonas aeruginosa species 1 Pseudomonas alcaligenes 1 species 43263 2209 0 53412 0 2018 Pseudomonas resinovorans 1 species 2158 0 1232139 species subgroup 1 2158 0 1149133 species 1 Pseudomonas furukawaii species 1 Pseudomonas silesiensis 0 1178 1853130 Pseudomonas rhizosphaerae 1 species 216142 1635 0 0 3100 930166 species 1 Pseudomonas brassicacearum 2084 0 101564 Pseudomonas alcaliphila species 1 1414 0 1583341 species 1 Pseudomonas cerasi species 1 Pseudomonas entomophila 1416 0 312306 Pseudomonas cremoricolorata 1 species 157783 1242 0 30127 0 136845 species group 6 1 species Pseudomonas putida 303 16941 0 1 species Pseudomonas plecoglossicida 70775 0 1286 2218 0 47880 species 1 Pseudomonas fulva 76759 4082 0 1 species Pseudomonas monteilii 0 1974 47885 species 1 Pseudomonas oryzihabitans 1 species Pseudomonas mosselii 78327 0 3626 219572 1289 0 1 species Pseudomonas antarctica 65741 0 2313 1 species Pseudomonas knackmussii Pseudomonas lurida species 1 0 1354 244566 135619 0 44273 1 66 order 787 Oceanospirillales 9 family 84 Alcanivoracaceae 224372 6836 0 1 1 Ketobacter genus 2 1 0 1378 2025617 1377 0 1917421 species 1 Ketobacter alkanivorans 0 5374 59753 1 genus 6 Alcanivorax 94 1094342 1226 0 Alcanivorax xenomutans 1 species 1822 0 1306787 species 1 Alcanivorax pacificus 0 374 59754 Alcanivorax borkumensis species 1 1 species Alcanivorax dieselolei 285091 1482 0 0 376 2638842 no rank 1 1113728 0 376 Alcanivorax sp. NBRC 101098 1 species 224379 0 1373 1 3 family 2 Hahellaceae 158481 1371 0 1 2 genus 2 Hahella species 1 Hahella chejuensis 1369 0 158327 2 family 191033 417 0 0 417 141450 1 genus 2 Oleiphilus 1 1 species Oleiphilus messinensis 141451 0 416 1 28256 0 27593 427 Halomonadaceae 30 family 13 Cobetia 2 genus 1 204286 0 1857 Cobetia marina 1 species 28258 0 1844 genus 3 Kushneria 35 2787 0 504090 1 157779 1302 0 Kushneria marisflavi 1 species 698828 1450 0 Kushneria konosiri 1 species 114403 242 0 3 no rank 235572 71 0 1 genus 91844 71 0 Candidatus Portiera aleyrodidarum 1 species 0 21 114185 genus 1 species 1 Candidatus Carsonella ruddii 21 0 114186 genus 1 150 0 1495768 Candidatus Evansia muelleri 1 species 1495769 150 0 34 Halotalea 2 genus 1 376488 0 1472 1438 0 376489 species 1 Halotalea alkalilenta Chromohalobacter 8 2 genus 1 42054 0 1497 Chromohalobacter salexigens species 1 0 1489 158080 220 Halomonas 15 genus 1 2745 0 17651 1897729 0 2013 Halomonas aestuarii 1 species Halomonas huangheensis species 1 0 1104 1178482 115561 0 1624 Halomonas hydrothermalis 1 species 1 species Halomonas beimenensis 475662 2237 0 507626 0 1511 Halomonas chromatireducens 1 species no rank 8 8463 0 2609666 1 species Halomonas sp. GFAJ-1 1118153 0 540 0 2317 1883416 species 1 Halomonas sp. 1513 0 1530 2136172 Halomonas sp. SF2003 species 1 1971364 522 0 1 species Halomonas sp. GT 0 832 1504981 species 1 Halomonas sp. KO116 768 0 1962264 Halomonas sp. 'Soap Lake #7' species 1 1 species Halomonas sp. 'Soap Lake #6' 1949203 768 0 1610576 1186 0 1 species Halomonas sp. R57-5 0 479 213554 species 1 Halomonas campaniensis 1 404432 1660 0 13 Salinicola 2 genus 1771309 1647 0 1 species Salinicola tamaricis 1 135620 4597 0 72 Oceanospirillaceae 11 family Bacterioplanes 11 genus 2 1 0 855 1537406 Bacterioplanes sanyensis species 1 0 844 1249553 1 genus 187492 0 431 species 1 Thalassolituus oleivorans 431 0 187493 1799 0 48075 1 genus 2 Marinobacterium 13 1821621 1786 0 1 species Marinobacterium aestuarii Marinomonas 5 4 genus 1 28253 1059 0 936476 0 334 1 species Marinomonas posidonica 0 358 119864 Marinomonas mediterranea species 1 no rank 1 0 362 196814 Marinomonas sp. MWYL1 1 species 400668 0 362 0 381 188907 genus 1 Oleispira antarctica 1 species 188908 0 381 255527 0 1364 1 4 family 7 Saccharospirillaceae 2 genus 11 Gynuella 1445504 887 0 1 Gynuella sunshinyii 1 species 1445505 0 876 0 470 230494 genus 1 1336806 0 470 Reinekea forsetii 1 species 7 Kangiellaceae 6 family 1 1920240 0 1306 261963 0 1299 1 5 genus 62 Kangiella Kangiella koreensis species 1 0 252 261964 Kangiella profundi species 1 328 0 1561924 0 463 1144748 species 1 Kangiella sediminilitoris 0 194 914150 Kangiella geojedonensis species 1 2 Oligoflexia class 10 1 4618 0 1553900 2024979 0 1341 1 4 order Bacteriovoracales 1 0 689 1652132 family 1 1652133 689 0 1 genus 97084 689 0 Halobacteriovorax marinus 1 species 0 651 263369 1 family 2 Bacteriovoracaceae 1 genus 1 650 0 146784 Bacteriovorax stolpii species 1 0 650 960 24 Bdellovibrionales 5 order 1 213481 0 3275 Bdellovibrionaceae 31 4 family 1 213483 0 3251 1 3220 0 958 Bdellovibrio 9 genus 3 453816 322 0 1 species Bdellovibrio exovorus 959 2889 0 1 species Bdellovibrio bacteriovorus 351 class 1171 Betaproteobacteria 28216 0 527076 1 193 Nitrosomonadales order 44 1 0 18783 32003 1 0 2292 90627 Gallionellaceae 46 family 5 1 0 1454 314343 43 Sideroxydans genus 2 1 species Sideroxydans lithotrophicus 63745 0 1411 1 792 0 96 Gallionella 11 genus 2 1 species Gallionella capsiferriformans 370405 781 0 family 3 Thiobacillaceae 19 1238 0 2008790 1 1 0 1219 919 22 Thiobacillus genus 2 Thiobacillus denitrificans 1 species 36861 0 1197 206379 4470 0 1 12 family Nitrosomonadaceae 27 Nitrosomonas 11 7 genus 1 914 0 2744 1 species Nitrosomonas ureae 44577 297 0 0 760 2609265 no rank 2 261292 0 469 1 species Nitrosomonas sp. Is79A3 Nitrosomonas sp. AL212 species 1 291 0 153948 734 0 915 species 1 Nitrosomonas europaea 366 0 916 species 1 Nitrosomonas eutropha 0 576 44574 Nitrosomonas communis species 1 4 genus 11 Nitrosospira 35798 1699 0 1 1288494 0 568 1 species Nitrosospira lacus Nitrosospira multiformis species 1 463 0 1231 657 0 35799 Nitrosospira briensis species 1 Methylophilaceae 27 14 family 1 32011 0 4265 1 572 0 1679002 3 Candidatus Methylopumilus genus 3 1581680 272 0 1 species Candidatus Methylopumilus turicensis species 1 Candidatus Methylopumilus planktonicus 297 0 1581557 1 81682 0 1595 36 Methylovorus 3 genus 0 830 266009 species 1 Methylovorus glucosotrophus 1 no rank 2634027 0 729 Methylovorus sp. MP688 species 1 729 0 887061 0 645 359407 1 genus 3 Methylotenera 9 Methylotenera versatilis 1 species 1055487 245 0 0 391 359408 Methylotenera mobilis species 1 2 Methylophilus 2 genus 1 16 503 0 0 501 2630143 no rank 1 Methylophilus sp. TWE2 1 species 1662285 0 501 923 0 404 1 genus 2 3 Methylobacillus 405 0 920 Methylobacillus flagellatus 1 species 2243 0 2772226 family 4 0 928 935200 1 genus 2 Sulfuricella 31 897 0 649841 Sulfuricella denitrificans species 1 1 1778653 1315 0 Sulfuriferula 23 2 genus no rank 1 0 1292 2637784 0 1292 1985873 species 1 Sulfuriferula sp. AH1 133 Sterolibacteriaceae 5 family 1 2008793 0 4082 10 Methyloversatilis genus 2 1 0 1847 378210 1 no rank 2639971 1837 0 0 1837 1842540 Methyloversatilis sp. RAC08 species 1 1 1054211 0 2102 34 Sulfuritalea 2 genus 1 species Sulfuritalea hydrogenivorans 748811 0 2068 no rank 2 2262 0 33809 322 0 543913 species 1 beta proteobacterium CB 1904640 1940 0 1 species Betaproteobacteria bacterium GR16-43 42466 0 206351 1 order 36 629 Neisseriales 481 0 21899 1 22 family Neisseriaceae 229 59 1755 0 1 3 genus 25 Vitreoscilla 63 0 1485 Vitreoscilla filiformis 1 species no rank 1 0 245 2627922 245 0 96942 Vitreoscilla sp. C1 species 1 no rank 1 356 0 421605 Neisseriaceae bacterium DSM 100970 species 1 356 0 2052837 1193515 684 0 1 genus 1 species Snodgrassella alvi 1196083 0 684 2 Simonsiella 2 genus 1 71 300 0 72 0 298 Simonsiella muelleri 1 species 1 482 0 17220 258 Neisseria 12 genus 3611 0 487 Neisseria meningitidis species 1 0 911 495 Neisseria elongata species 1 1853278 0 1605 Neisseria sp. 10023 1 species 490 1125 0 Neisseria sicca 1 species species 1 Neisseria gonorrhoeae 0 1396 485 Neisseria lactamica 1 species 486 2143 0 3122 0 2623750 no rank 2 655307 2511 0 Neisseria sp. KEM232 1 species Neisseria sp. 10022 1 species 1853276 611 0 1 species Neisseria mucosa 488 1014 0 855 0 28091 species 1 Neisseria weaveri Neisseria zoodegmatis 1 species 326523 1180 0 1355 0 538 1 genus 2 Eikenella 26 539 1329 0 Eikenella corrodens 1 species 19938 0 1499392 1 family 13 Chromobacteriaceae 267 2 genus 14 Aquaspirillum 187 0 2210 1 2196 0 2620219 no rank 1 Aquaspirillum sp. LM1 1 species 1938604 2196 0 1 2265 0 168470 Laribacter 54 genus 2 species 1 Laribacter hongkongensis 2211 0 168471 2 genus Jeongeupia 31 885864 0 1831 1 0 1800 2619593 no rank 1 0 1800 1906741 species 1 Jeongeupia sp. USM3 0 10193 90153 no rank 4 1 10193 0 535 Chromobacterium 192 genus 4 1 species Chromobacterium vaccinii 1108595 0 3913 3002 0 2641838 no rank 1 2059672 0 3002 Chromobacterium sp. ATCC 53434 1 species 536 0 3086 1 species Chromobacterium violaceum 568394 3172 0 1 2 genus Pseudogulbenkiania 32 0 3140 2642558 no rank 1 1 species Pseudogulbenkiania sp. NH8B 748280 3140 0 234 order Burkholderiales 5498 80840 430954 0 1 family 43 Alcaligenaceae 630 0 79010 506 1 97 Castellaniella 2 genus 1 359336 2852 0 Castellaniella defragrans species 1 0 2755 75697 genus 2 1 Oligella 313 0 90243 1 Oligella urethralis species 1 312 0 90245 genus 2 Alcaligenes 39 2747 0 507 1 1 species Alcaligenes faecalis 511 2708 0 1 517 36809 0 Bordetella 1356 17 genus 0 1059 35814 Bordetella holmesii species 1 520 1752 0 1 species Bordetella pertussis 2529 0 463024 species 1 Bordetella genomosp. 6 0 2145 103855 Bordetella hinzii species 1 1 species Bordetella pseudohinzii 1331258 0 2419 no rank 1 0 2162 2630031 1697043 2162 0 1 species Bordetella sp. H567 0 4444 518 Bordetella bronchiseptica species 1 0 2288 1416803 species 1 Bordetella genomosp. 9 0 1904 94624 Bordetella petrii species 1 1 species Bordetella genomosp. 13 463040 2553 0 species 1 Bordetella flabilis 1906 0 463014 0 1940 123899 species 1 Bordetella trematum 0 1214 521 species 1 Bordetella avium 1 species Bordetella genomosp. 8 1416806 0 2138 Bordetella bronchialis 1 species 463025 2638 0 Bordetella parapertussis species 1 2362 0 519 785 0 29574 genus 2 Taylorella asinigenitalis species 1 488 0 84590 0 297 29575 Taylorella equigenitalis species 1 genus 6 Achromobacter 1044 0 28823 222 1 Achromobacter denitrificans 1 species 32002 0 5917 Achromobacter xylosoxidans species 1 0 11665 85698 1 species Achromobacter spanius 217203 4868 0 2626865 0 2883 1 no rank 1758194 0 2883 Achromobacter sp. AONIH1 1 species 2446 0 217204 Achromobacter insolitus species 1 Basilea 3 2 genus 1 1472344 353 0 350 0 1472345 Basilea psittacipulmonis species 1 1100891 0 252 1 2 genus Paenalcaligenes 3 643674 0 249 Paenalcaligenes hominis 1 species 2740 0 1921582 1 genus 2 Orrella 55 1851544 2685 0 Orrella dioscoreae 1 species genus 3 15 Advenella 0 1842 290425 1 species 1 Advenella kashmirensis 966 0 310575 Advenella mimigardefordensis 1 species 302406 861 0 3 Pusillimonas 2 genus 1 305976 864 0 2640016 861 0 1 no rank 0 861 1007105 Pusillimonas sp. T7-7 species 1 84 family 1167 Burkholderiaceae 119060 165846 0 1 1 0 21112 1822464 460 Paraburkholderia genus 12 1482 0 252970 Paraburkholderia phenoliruptrix species 1 1604 0 134537 Paraburkholderia fungorum species 1 0 2578 75105 species 1 Paraburkholderia caribensis 261302 0 1723 Paraburkholderia phytofirmans 1 species Paraburkholderia xenovorans species 1 2022 0 36873 0 1562 311230 species 1 Paraburkholderia terrae 169430 0 1994 Paraburkholderia hospita 1 species 2093 0 2026199 species 1 Paraburkholderia aromaticivorans no rank 1 1708 0 2615204 Paraburkholderia sp. SOS3 1 species 1926494 1708 0 1 species Paraburkholderia sprentiae 948107 1987 0 148447 1899 0 Paraburkholderia phymatum 1 species 2571159 0 847 1 genus Paraburkholderia rhizoxinica 1 species 412963 0 847 genus 1 0 1697 1827195 Burkholderia sp. RPE64 1 species 758793 1697 0 Ralstonia 464 genus 5 1 0 17506 48736 species 1 Ralstonia insidiosa 2382 0 190721 1 species Ralstonia solanacearum 305 8049 0 0 2761 105219 Ralstonia mannitolilytica species 1 3850 0 329 Ralstonia pickettii species 1 0 24260 106589 1 genus 9 Cupriavidus 990 1 species Cupriavidus gilardii 82541 1995 0 106590 4529 0 Cupriavidus necator 1 species 68895 2731 0 1 species Cupriavidus basilensis Cupriavidus metallidurans species 1 0 2079 119219 Cupriavidus sp. USMAA1020 1 species 367825 3216 0 248026 2122 0 Cupriavidus pinatubonensis 1 species 6598 0 2640874 no rank 2 species 1 Cupriavidus sp. USMAHM13 2982 0 1389192 species 1 Cupriavidus sp. USMAA2-4 3616 0 876364 675 0 44013 1 genus 4 Polynucleobacter 3 1835254 0 250 Polynucleobacter duraquae 1 species 576610 166 0 1 species Polynucleobacter necessarius Polynucleobacter asymbioticus 1 species 576611 256 0 Burkholderia 4493 41 genus 1 32008 85556 0 1 species Burkholderia gladioli 28095 0 3974 11 no rank 2613784 0 15308 Burkholderia sp. CCGE1001 species 1 1315 0 640510 species 1 Burkholderia sp. PAMC 28687 1048 0 1795874 1 species Burkholderia sp. Bp7605 1740163 0 1496 1 species Burkholderia sp. CCGE1003 640512 1448 0 species 1 Burkholderia sp. HB1 1376 0 1678678 1808 0 1097668 Burkholderia sp. YI23 species 1 0 1760 758796 Burkholderia sp. RPE67 species 1 1325 0 1468409 species 1 Burkholderia sp. 2002721687 species 1 Burkholderia sp. Bp5365 1222 0 1740162 Burkholderia sp. KJ006 species 1 1476 0 416344 1034 0 1795043 species 1 Burkholderia sp. PAMC 26561 41899 0 2460 1 species Burkholderia plantarii species group 7 12971 0 111527 1 species Burkholderia thailandensis 57975 3113 0 13373 0 1068 1 species Burkholderia mallei 1 species Burkholderia sp. MSMB617WGS 1637831 0 1104 1186 0 1637837 species 1 Burkholderia sp. MSMB0266 1637841 1353 0 1 species Burkholderia sp. MSMB0852 0 1695 342113 Burkholderia oklahomensis species 1 28450 3452 0 1 species Burkholderia pseudomallei 1 species Burkholderia glumae 337 0 4025 species group 19 0 42325 87882 7076 0 292 species 1 Burkholderia cepacia 1170 0 488732 species 1 Burkholderia diffusa 0 2060 482957 species 1 Burkholderia lata species 1 Burkholderia ambifaria 0 1799 152480 species 1 [Pseudomonas] mesoacidophila 0 1284 265293 0 1144 488731 species 1 Burkholderia seminalis species 1 Burkholderia territorii 0 819 1503055 species 1 Burkholderia latens 0 1307 488446 Burkholderia ubonensis species 1 4170 0 101571 Burkholderia metallica 1 species 488729 0 1092 1 species Burkholderia cenocepacia 95486 6873 0 0 1033 60550 species 1 Burkholderia pyrrocinia Burkholderia pseudomultivorans species 1 1575 0 1207504 1397 0 1503054 species 1 Burkholderia stagnalis 1 species Burkholderia stabilis 95485 0 2092 87883 0 2974 Burkholderia multivorans 1 species 1 species Burkholderia vietnamiensis 60552 2047 0 1 species Burkholderia contaminans 488447 1203 0 0 1210 152500 species 1 Burkholderia dolosa 0 13026 93217 1 genus 10 Pandoraea 316 656178 1535 0 1 species Pandoraea vervacti 1415 0 93220 species 1 Pandoraea pnomenusa 0 1460 93219 species 1 Pandoraea norimbergensis Pandoraea sputorum 1 species 93222 0 1491 0 1669 573737 species 1 Pandoraea oxalativorans species 1 Pandoraea faecigallinarum 0 1230 656179 species 1 Pandoraea apista 0 1336 93218 Pandoraea pulmonicola species 1 0 1343 93221 445709 1231 0 1 species Pandoraea thiooxydans 451 Oxalobacteraceae 29 family 1 75682 48125 0 genus 2 Oxalobacter 3 0 925 846 1 847 0 922 1 species Oxalobacter formigenes 95 Collimonas genus 4 1 7205 0 202907 species 1 Collimonas pratensis 0 2506 279113 Collimonas arenae 1 species 279058 2603 0 Collimonas fungivorans species 1 0 2001 158899 Herbaspirillum 307 genus 6 1 0 12404 963 1106 0 2624150 no rank 1 2025949 1106 0 1 species Herbaspirillum sp. meg3 92645 3087 0 1 species Herbaspirillum frisingense 3360 0 964 species 1 Herbaspirillum seropedicae Herbaspirillum hiltneri species 1 1816 0 341045 2728 0 80842 Herbaspirillum rubrisubalbicans species 1 1 149698 0 14918 389 Massilia 6 genus Massilia putida 1 species 1141883 3325 0 2072590 0 3363 Massilia sp. ZMN-3 1 species Massilia sp. B2 species 1 2278 0 2045208 2 no rank 2609279 5563 0 0 2355 1707785 Massilia sp. WG5 species 1 1 species Massilia sp. NR 4-1 1678028 0 3208 1 29580 10925 0 Janthinobacterium 165 7 genus 1 species Janthinobacterium svalbardensis 368607 0 2449 1725 0 55508 Janthinobacterium agaricidamnosum species 1 4 no rank 2610881 6586 0 1 species Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 2690 0 683 0 1236179 species 1 Janthinobacterium sp. B9-8 Janthinobacterium sp. Marseille species 1 0 803 375286 1 species Janthinobacterium sp. LM6 1938606 2410 0 1 303379 0 1297 Herminiimonas 23 3 genus 798 0 204773 Herminiimonas arsenicoxydans species 1 Herminiimonas arsenitoxidans species 1 0 476 1809410 family 58 1828 Comamonadaceae 0 104562 80864 1 2 genus Alicycliphilus 28 201096 3077 0 1 Alicycliphilus denitrificans species 1 3049 0 179636 3 genus 48 Ottowia 219181 0 4027 1 2645081 0 1771 1 no rank 1658672 1771 0 1 species Ottowia sp. oral taxon 894 2208 0 2109914 Ottowia sp. KADR8-3 species 1 1 52972 4163 0 33 Polaromonas 3 genus 216465 0 2312 Polaromonas naphthalenivorans 1 species 0 1818 2638319 no rank 1 Polaromonas sp. JS666 species 1 0 1818 296591 203 Hydrogenophaga 4 genus 1 47420 0 6670 no rank 2 4937 0 2610897 species 1 Hydrogenophaga sp. RAC07 2207 0 1842537 Hydrogenophaga sp. PBC species 1 0 2730 795665 Hydrogenophaga crassostreae species 1 1530 0 1763535 1 1649468 0 2312 Melaminivora 78 2 genus 2641902 2234 0 1 no rank 2234 0 2109913 Melaminivora sp. SC2-9 species 1 9 genus 633 Acidovorax 12916 0 18578 1 4 no rank 2684926 9334 0 Acidovorax sp. RAC01 species 1 2747 0 1842533 2465 0 358220 Acidovorax sp. KKS102 species 1 Acidovorax sp. JS42 1 species 232721 2027 0 1858609 2095 0 1 species Acidovorax sp. T1 553814 0 1943 1 species Acidovorax sp. NA3 0 2016 721785 species 1 Acidovorax ebreus 0 2149 80869 species 1 Acidovorax citrulli 2503 0 80867 species 1 Acidovorax avenae 2 genus 665874 1566 0 0 1566 2626134 no rank 2 species 1 Limnohabitans sp. 63ED37-2 0 1006 1678128 Limnohabitans sp. 103DPR2 1 species 1678129 0 560 1948 0 238749 1 genus 2 13 Diaphorobacter 1546149 0 1935 Diaphorobacter polyhydroxybutyrativorans 1 species 80865 13610 0 1 5 genus 469 Delftia 0 3012 180282 species 1 Delftia tsuruhatensis 2613839 0 6776 2 no rank species 1 Delftia sp. Cs1-4 3404 0 742013 1920191 0 3372 1 species Delftia sp. HK171 80866 3353 0 1 species Delftia acidovorans 2678886 2300 0 1 genus Melaminivora sp. SC2-7 1 species 2116657 0 2300 2490452 3245 0 2 genus Comamonadaceae bacterium B1 1 species 1458426 1756 0 0 1489 1458425 species 1 Comamonadaceae bacterium A1 genus 2 Ramlibacter 23 4803 0 174951 1 Ramlibacter tataouinensis 1 species 94132 0 4780 34072 15357 0 1 5 genus 286 Variovorax no rank 2 5165 0 663243 1375 0 1795631 species 1 Variovorax sp. PAMC 28711 0 3790 2126319 species 1 Variovorax sp. PMC12 34073 0 6797 1 species Variovorax paradoxus 0 3109 436515 Variovorax boronicumulans species 1 1 283 9412 0 122 Comamonas 4 genus 0 2516 225992 species 1 Comamonas kerstersii Comamonas testosteroni species 1 4384 0 285 Comamonas serinivorans 1 species 1082851 2390 0 1436289 0 975 1 2 genus 6 Candidatus Symbiobacter Candidatus Symbiobacter mobilis 1 species 1436290 0 969 2 genus Simplicispira 36 352450 1633 0 1 1 species Simplicispira sp. SC1-8 2109915 1597 0 53 Rhodoferax genus 5 1 0 7135 28065 species 1 Rhodoferax koreense 2666 0 1842727 1 species Rhodoferax ferrireducens 192843 0 1206 0 1866 1484693 species 1 Rhodoferax saidenbachensis 1344 0 81479 species 1 Rhodoferax antarcticus Verminephrobacter 15 2 genus 1 364316 0 1923 Verminephrobacter eiseniae species 1 1908 0 364317 80841 2708 0 2 no rank 1574 0 1834205 Burkholderiales bacterium YL45 species 1 1469502 1134 0 1 species Burkholderiales bacterium GJ-E10 0 25205 224471 no rank 17 genus 2 75 Roseateles 2904 0 93681 1 Roseateles depolymerans species 1 0 2829 76731 1 65047 0 3011 Mitsuaria 184 2 genus 1 no rank 2648776 0 2827 0 2827 1658665 Mitsuaria sp. 7 species 1 genus 2 Paucibacter 61 2351 0 318147 1 2642959 2290 0 1 no rank 1768242 2290 0 1 species Paucibacter sp. KCTC 42545 genus 2 74 Rhizobacter 2923 0 212743 1 species 1 Rhizobacter gummiphilus 2849 0 946333 1 species [Polyangium] brachysporum 413882 0 2545 1 316612 0 2231 60 Methylibium 2 genus Methylibium petroleiphilum 1 species 105560 2171 0 1 0 3719 28067 Rubrivivax 77 genus 2 1 species Rubrivivax gelatinosus 28068 0 3642 2 genus 78 Thiomonas 32012 0 2496 1 1 species Thiomonas intermedia 926 0 2418 Leptothrix 79 genus 2 1 3025 0 88 Leptothrix cholodnii 1 species 34029 2946 0 0 2454 119066 no rank 12 0 114 1381133 1 genus 2 Candidatus Profftella 1 Candidatus Profftella armatura species 1 113 0 669502 0 31 189384 genus 1 189385 0 31 1 species Candidatus Tremblaya princeps Kinetoplastibacterium 19 genus 6 1 0 736 33055 994695 0 102 1 species Candidatus Kinetoplastibacterium galatii 233181 120 0 1 species Kinetoplastibacterium blastocrithidii species 1 Candidatus Kinetoplastibacterium oncopeltii 0 114 994696 Candidatus Kinetoplastibacterium crithidii species 1 0 146 33056 235 0 994692 Candidatus Kinetoplastibacterium desouzaii species 1 genus 1 57 0 1301080 1160784 0 57 Candidatus Nasuia deltocephalinicola 1 species genus 2 Candidatus Accumulibacter 110 1516 0 327159 1 1406 0 327160 Candidatus Accumulibacter phosphatis species 1 22 order 585 Rhodocyclales 206389 28986 0 1 1 2008795 1273 0 Azonexaceae 33 3 family Dechloromonas 26 genus 2 1 0 1240 73029 0 1214 259537 Dechloromonas aromatica species 1 242 Rhodocyclaceae family 6 1 6659 0 75787 1 no rank 75788 0 1706 1898103 0 1706 Rhodocyclaceae bacterium 1 species 1 146937 0 3082 73 Azospira 2 genus species 1 Azospira oryzae 0 3009 146939 Aromatoleum 27 genus 2 1 0 1629 551759 1602 0 551760 Aromatoleum aromaticum species 1 family 12 639 Zoogloeaceae 0 20469 2008794 1 genus 5 Azoarcus 345 0 8376 12960 1 no rank 2 0 4468 2629479 1 species Azoarcus sp. KH32C 748247 2025 0 198107 0 2443 Azoarcus sp. CIB 1 species 1 species Azoarcus olearius 418699 1979 0 0 1584 2067960 species 1 Azoarcus sp. SY39 33057 11454 0 1 6 genus 332 Thauera 1826 0 59405 species 1 Thauera aromatica 2609274 0 5430 2 no rank 2005884 2768 0 1 species Thauera sp. K11 1 species Thauera sp. MZ1T 85643 0 2662 1134435 2058 0 Thauera humireducens 1 species 96773 1808 0 Thauera chlorobenzoica 1 species 1807140 0 3336 6 class 3336 0 225057 1 order 6 Acidithiobacillales 38 1 225058 0 3298 Acidithiobacillaceae 40 5 family genus 4 54 Acidithiobacillus 0 3258 119977 1 920 0 1032 Acidithiobacillus ferrooxidans 1 species 160808 0 1079 1 species Acidithiobacillus ferrivorans Acidithiobacillus caldus species 1 1093 0 33059 28211 0 602932 1 558 class 2329 Alphaproteobacteria 1 1921002 0 608 Holosporales 1 6 order Caedimonadaceae 1 2 family 1 2100208 169 0 genus 1 168 0 1509243 0 168 1509244 Candidatus Nucleicultrix amoebiphila species 1 1 family 44746 0 265 no rank 1 0 265 204454 endosymbiont of Acanthamoeba sp. UWC8 species 1 265 0 86106 0 173 1777752 family 2 Candidatus Paracaedibacter 2 genus 2 1 173 0 1521255 Candidatus Paracaedibacter acanthamoebae 1 species 91604 0 171 Rickettsiales 26 order 51 1 8926 0 766 Anaplasmataceae 2 family 21 1 0 3689 942 genus 6 Ehrlichia 56 1436 0 943 1 178 0 106181 no rank 1 Ehrlichia sp. HF species 1 0 178 391036 species group 4 1202 0 106178 Ehrlichia muris 1 species 35795 369 0 269 0 944 Ehrlichia canis species 1 species 1 Ehrlichia chaffeensis 210 0 945 Ehrlichia ruminantium 1 species 779 0 354 3 genus 33993 804 0 33994 477 0 Neorickettsia helminthoeca 1 species 1 species Neorickettsia sennetsu 951 147 0 Neorickettsia risticii species 1 180 0 950 genus 3 604 0 768 0 196 770 Anaplasma marginale species 1 species group 1 243 0 106179 Anaplasma phagocytophilum 1 species 948 243 0 Anaplasma centrale 1 species 769 165 0 8 tribe 952 0 843 1 953 843 0 16 Wolbachia 8 genus 827 0 2640676 no rank 7 Wolbachia sp. wRi 1 species 66084 0 52 77 0 100901 Wolbachia endosymbiont of Onchocerca ochengi species 1 Wolbachia endosymbiont of Drosophila simulans 1 species 77038 337 0 species 1 Wolbachia endosymbiont of Cimex lectularius 54 0 246273 61 0 77551 Wolbachia endosymbiont of Onchocerca volvulus species 1 species 1 Wolbachia endosymbiont of Brugia malayi 0 135 80849 111 0 163164 species 1 Wolbachia endosymbiont of Drosophila melanogaster 16 Rickettsiaceae 26 family 1 775 0 4757 1 genus 2115980 528 0 0 528 2115978 Candidatus Phycorickettsia trachydisci species 1 4213 0 33988 tribe 24 genus 23 538 Rickettsia 0 3807 780 1 114292 0 387 2 species group 0 148 782 Rickettsia prowazekii species 1 1 species Rickettsia typhi 785 0 239 1129742 0 376 2 species group 33990 280 0 Rickettsia bellii 1 species 788 96 0 1 species Rickettsia canadensis no rank 1 0 193 114295 Rickettsia endosymbiont of Bemisia tabaci 1 species 337479 0 193 17 species group 114277 0 2313 45 0 1105106 Rickettsia philipii species 1 255 0 109232 Rickettsia monacensis species 1 33992 0 94 1 species Rickettsia rhipicephali 1 species Rickettsia montanensis 33991 80 0 0 123 33989 species 1 Rickettsia amblyommatis 0 90 35788 Rickettsia africae species 1 35790 43 0 Rickettsia japonica 1 species 0 41 35794 Rickettsia slovaca species 1 species 1 Rickettsia heilongjiangensis 53 0 226665 Rickettsia parkeri species 1 9 0 35792 1 species Rickettsia massiliae 35791 0 68 783 58 0 1 species Rickettsia rickettsii 786 320 0 Rickettsia akari 1 species 787 0 278 Rickettsia australis 1 species Rickettsia conorii 1 species 781 76 0 species 1 Rickettsia peacockii 130 0 47589 42862 550 0 1 species Rickettsia felis 1 genus 69474 0 406 species 1 Orientia tsutsugamushi 406 0 784 1 no rank 1699067 331 0 Rickettsiales bacterium Ac37b 1 species 1528098 0 331 1 123 0 1328881 7 Candidatus Midichloriaceae family 2 411566 116 0 1 genus Candidatus Midichloria mitochondrii 1 species 234827 0 116 1204 Rhodospirillales 64 order 1 204441 0 88541 29 family 768 Rhodospirillaceae 41295 52390 0 1 Pararhodospirillum 15 2 genus 1 1612157 0 1155 0 1140 1084 Pararhodospirillum photometricum species 1 1263978 0 273 1 genus 1263979 0 273 1 species Candidatus Endolissoclinum faulkneri 272 Magnetospirillum genus 5 1 11715 0 13134 Magnetospirillum gryphiswaldense 1 species 55518 0 3196 1 species Magnetospirillum magneticum 84159 2596 0 0 5651 2617991 no rank 2 1 species Magnetospirillum sp. XM-1 1663591 2778 0 Magnetospirillum sp. ME-1 1 species 1639348 0 2873 1804663 682 0 1 genus 1549855 682 0 Haematospirillum jordaniae 1 species 345 Azospirillum genus 5 1 0 19951 191 193 0 6866 Azospirillum lipoferum 1 species 1 species Azospirillum humicireducens 1226968 1903 0 192 0 6622 1 species Azospirillum brasilense 528244 0 4215 Azospirillum thiophilum 1 species 50 Niveispirillum genus 2 1 0 2497 1543704 Niveispirillum cyanobacteriorum species 1 0 2447 1612173 4084 0 1543705 1 genus 2 Nitrospirillum 46 species 1 Nitrospirillum amazonense 0 4038 28077 2620 0 168934 1 genus 3 17 Thalassospira 1 species Thalassospira xiamenensis 220697 1432 0 Thalassospira sp. CSC3H3 1 species 2048283 1171 0 1 1081 0 5076 Rhodospirillum 71 3 genus 34018 3261 0 Rhodospirillum centenum 1 species Rhodospirillum rubrum species 1 0 1744 1085 Tistrella 48 genus 2 1 0 2549 171436 2501 0 171437 species 1 Tistrella mobilis 1 1020 0 1182780 Magnetospira 9 genus 2 2685734 0 1011 1 no rank 1288970 1011 0 1 species Magnetospira sp. QH-2 34947 0 433 1 family 34 620 Acetobacteraceae genus 2 Parasaccharibacter 6 0 1176 1602345 1 species 1 Parasaccharibacter apium 1170 0 1510841 125216 5124 0 1 3 genus 136 Roseomonas 0 2667 2617492 no rank 1 Roseomonas sp. FDAARGOS_362 1 species 2018065 2667 0 257708 2321 0 1 species Roseomonas gilardii 0 2696 364409 1 genus 2 39 Granulibacter 0 2657 364410 Granulibacter bethesdensis species 1 1 3016 0 522 78 Acidiphilium genus 3 Acidiphilium multivorum species 1 1537 0 62140 524 0 1401 1 species Acidiphilium cryptum 1 89583 1758 0 Gluconacetobacter 33 2 genus 33996 0 1725 1 species Gluconacetobacter diazotrophicus 148 Komagataeibacter 5 genus 1 1434011 0 6010 Komagataeibacter europaeus 1 species 33995 0 1017 1177712 862 0 Komagataeibacter medellinensis 1 species 1 species Komagataeibacter nataicola 265960 1224 0 0 2759 28448 species 1 Komagataeibacter xylinus 1 441 0 3068 80 Gluconobacter 3 genus Gluconobacter albidus 1 species 318683 980 0 0 2008 442 species 1 Gluconobacter oxydans genus 1 1016 0 153497 Kozakia baliensis species 1 1016 0 153496 0 954 91914 1 genus 2 3 Asaia 1 species Asaia bogorensis 91915 0 951 4 Neoasaia genus 2 1 1214 0 320496 0 1210 320497 Neoasaia chiangmaiensis species 1 434 0 8295 1 8 genus 203 Acetobacter 151157 0 1202 1 subgenus 1 species Acetobacter aceti 435 1202 0 996 0 1076596 species 1 Acetobacter persici 0 1053 104102 species 1 Acetobacter tropicalis 2561 0 438 species 1 Acetobacter pasteurianus 0 671 65959 species 1 Acetobacter pomorum Acetobacter oryzifermentans species 1 559 0 1633874 446692 1050 0 Acetobacter senegalensis 1 species 0 95665 204457 1 order 82 798 Sphingomonadales Erythrobacteraceae 352 family 22 1 19313 0 335929 1 genus 2800685 865 0 865 0 543877 Altererythrobacter marensis species 1 1 genus 2800682 0 1214 species 1 Altererythrobacter namhicola 1214 0 645517 0 1583 2800681 genus 2 502682 0 1011 Erythrobacter gangjinensis 1 species 1648404 0 572 1 species Erythrobacter atlanticus 6 no rank 2800788 0 5775 1 1111 2680 0 141 Porphyrobacter 3 genus 2683265 0 2539 2 no rank Porphyrobacter sp. LM 6 species 1 1236 0 1896196 Porphyrobacter HT-58-2 1 species 2023229 1303 0 0 3095 1041 1 genus 3 Erythrobacter 108 Erythrobacter litoralis 1 species 39960 1734 0 1112 1253 0 Porphyrobacter neustonensis 1 species 2800686 0 1914 2 genus species 1 Altererythrobacter dongtanensis 994 0 692370 0 920 1982042 species 1 Altererythrobacter mangrovi 1855416 1865 0 2 genus 1044 0 266951 species 1 Erythrobacter seohaensis 192812 0 821 1 species Erythrobacter flavus 4 genus 144 Altererythrobacter 361177 3221 0 1 1415 0 1267766 species 1 Altererythrobacter atlanticus 1 species Altererythrobacter ishigakiensis 476157 545 0 0 1117 361183 Altererythrobacter epoxidivorans species 1 2524 0 1295327 1 genus 3 Croceicoccus 79 1269 0 1348774 Croceicoccus naphthovorans species 1 450378 0 1176 Croceicoccus marinus 1 species 59 family Sphingomonadaceae 961 41297 75554 0 1 genus 10 Sphingopyxis 228 0 11440 165697 1 1 species Sphingopyxis fribergensis 1515612 0 1150 4066 0 2614943 no rank 4 species 1 Sphingopyxis sp. LPB0140 0 364 1913578 0 1116 292913 Sphingopyxis sp. 113P3 species 1 0 1227 1357916 species 1 Sphingopyxis sp. QXT-31 1 species Sphingopyxis sp. MG 1866325 0 1359 species 1 Sphingopyxis macrogoltabida 0 2415 33050 267128 0 1495 1 species Sphingopyxis granuli 1 species Sphingopyxis alaskensis 117207 0 1175 33052 0 911 Sphingopyxis terrae 1 species 916 0 2709685 genus 1 266812 916 0 Sphingorhabdus flavimaris 1 species Sphingorhabdus 35 3 genus 1 1434046 0 2410 2 no rank 2614947 2375 0 1806885 0 1463 Sphingorhabdus sp. M41 1 species 912 0 2077182 Sphingorhabdus sp. YGSMI21 species 1 1 1708 0 1649486 22 Rhizorhabdus genus 2 Rhizorhabdus dicambivorans 1 species 1850238 0 1686 1 0 21843 165695 402 Sphingobium genus 15 1 species Sphingobium hydrophobicum 1673076 0 1749 46429 0 1804 1 species Sphingobium chlorophenolicum 0 1678 13690 species 1 Sphingobium yanoikuyae Sphingobium herbicidovorans species 1 0 1350 76947 0 8827 2611147 no rank 6 species 1 Sphingobium sp. EP60837 0 951 1855519 1315974 1975 0 1 species Sphingobium sp. TKS 0 1684 1843368 species 1 Sphingobium sp. RAC03 1 species Sphingobium sp. YBL2 484429 0 1772 0 1286 627192 Sphingobium sp. SYK-6 species 1 1159 0 407020 species 1 Sphingobium sp. MI1205 1 species Sphingobium cloacae 120107 0 1518 Sphingobium japonicum species 1 1650 0 332056 332055 1677 0 Sphingobium indicum 1 species 1332080 0 1188 1 species Sphingobium baderi 0 23789 13687 1 genus 15 Sphingomonas 593 9183 0 196159 no rank 6 species 1 Sphingomonas sp. MM-1 1651 0 745310 Sphingomonas sp. NIC1 1 species 1961362 1710 0 1563 0 1938607 Sphingomonas sp. LM7 species 1 1030157 1227 0 Sphingomonas sp. KC8 1 species species 1 Sphingomonas sp. Cra20 0 1310 1327635 1390395 0 1722 Sphingomonas sp. LK11 1 species 0 1551 1609977 Sphingomonas hengshuiensis species 1 1 species Sphingomonas melonis 152682 1615 0 species 1 Sphingomonas koreensis 0 1575 93064 397260 0 2021 Sphingomonas sanxanigenens 1 species 0 1826 1549858 Sphingomonas taxi species 1 1918 Sphingomonas wittichii species 2 1 3838 0 160791 strain 1 Sphingomonas sp. DC-6 0 1920 1283312 Sphingomonas panacis 1 species 1560345 0 1587 0 1396 541 1 genus 2 Zymomonas 117 542 0 1279 Zymomonas mobilis 1 species Citromicrobium 24 genus 2 1 0 1392 72173 0 1368 2630544 no rank 1 1634516 0 1368 1 species Citromicrobium sp. JL477 1379 0 150203 1 genus 2 Blastomonas 8 1371 0 2626550 no rank 1 Blastomonas sp. RAC04 species 1 0 1371 1842535 1 7115 0 165696 Novosphingobium 77 genus 5 1770 0 205844 species 1 Novosphingobium pentaromativorans 158500 2055 0 Novosphingobium resinovorum 1 species Novosphingobium aromaticivorans 1 species 48935 1527 0 no rank 1 0 1686 2644732 1 species Novosphingobium sp. PP1Y 702113 1686 0 0 1205 2685927 genus 1 1921510 1205 0 1 species Sphingomonas sp. JJ-A5 1 262561 0 356 Rhizobiales 2936 order 212 45401 0 18258 1 19 family 158 Hyphomicrobiaceae Rhodoplanes 71 genus 2 1 1938 0 29407 2619116 1867 0 1 no rank Rhodoplanes sp. Z2-YC6860 species 1 0 1867 674703 2 genus 7 Pelagibacterium 1082930 1000 0 1 993 0 531813 Pelagibacterium halotolerans species 1 Hyphomicrobium 40 4 genus 1 81 5035 0 1427356 0 1928 1 species Hyphomicrobium nitrativorans Hyphomicrobium denitrificans species 1 0 1707 53399 2619925 0 1360 1 no rank 1360 0 717785 Hyphomicrobium sp. MC1 species 1 1 1068 0 1641 16 Rhodomicrobium 2 genus Rhodomicrobium vannielii species 1 1625 0 1069 1 5858 0 46913 157 Devosia genus 4 3 no rank 196773 0 5701 Devosia sp. I507 1 species 2083786 0 1110 1 species Devosia sp. H5989 1643450 2150 0 2441 0 1736675 Devosia sp. A16 species 1 2113 0 59282 1 genus 2 Blastochloris 90 species 1 Blastochloris viridis 0 2023 1079 2 genus 1 Filomicrobium 119044 515 0 1 514 0 1608628 species 1 Candidatus Filomicrobium marinum 118882 10896 0 1 20 family Brucellaceae 61 1 0 6245 528 Ochrobactrum 96 genus 5 419475 1599 0 1 species Ochrobactrum pseudogrignonense Ochrobactrum pituitosum 1 species 571256 1552 0 1452 0 271865 Ochrobactrum sp. A44 species 1 species 1 Ochrobactrum anthropi 1546 0 529 genus 14 1834 Brucella 4590 0 234 1 29459 129 0 Brucella melitensis 1 species 981386 272 0 1 species Brucella vulpis 47 0 236 Brucella ovis species 1 2632610 0 1383 4 no rank Brucella sp. 2002734562 species 1 85 0 1891098 species 1 Brucella sp. 141012304 443 0 1885919 386 0 1844051 Brucella sp. 09RB8910 species 1 1 species Brucella sp. 09RB8471 1149952 0 469 0 195 36855 Brucella canis species 1 species 1 Brucella ceti 225 0 120577 120576 0 229 Brucella pinnipedialis 1 species 29461 0 77 1 species Brucella suis 1 species Brucella abortus 235 157 0 Brucella microti species 1 42 0 444163 84808 0 82115 1 family 55 864 Rhizobiaceae Shinella 16 genus 2 1 0 3231 323620 0 3215 2643062 no rank 1 1 species Shinella sp. HZN7 879274 3215 0 Liberibacter 11 genus 6 1 865 0 34019 Liberibacter crescens 1 species 1273132 195 0 1 species Candidatus Liberibacter americanus 309868 128 0 34020 0 107 Candidatus Liberibacter africanus 1 species species 1 Candidatus Liberibacter asiaticus 0 328 34021 1 species Candidatus Liberibacter solanacearum 556287 0 96 36 no rank 227290 62427 0 0 15226 357 1 genus 7 243 Agrobacterium 0 8419 1183400 species group 2 Agrobacterium tumefaciens 1 species 358 0 6924 Agrobacterium fabrum species 1 0 1495 1176649 species 1 Agrobacterium rhizogenes 0 1629 359 1 species Agrobacterium vitis 373 0 1578 2632611 0 3357 2 no rank Agrobacterium sp. H13-3 1 species 861208 0 1897 1460 0 1842536 species 1 Agrobacterium sp. RAC06 2 genus 7 Neorhizobium 1525371 3328 0 1 3321 0 399 species 1 Neorhizobium galegae Rhizobium 3186 27 genus 1 379 43873 0 9745 0 384 Rhizobium leguminosarum species 1 species 1 Rhizobium etli 0 5057 29449 56730 0 2539 1 species Rhizobium gallicum 21 no rank 2613769 0 18824 species 1 Rhizobium sp. S41 0 1710 1869170 0 1602 1914541 Rhizobium sp. Y9 species 1 Rhizobium sp. CIAT894 species 1 0 1527 2020312 Rhizobium sp. NXC24 1 species 2048897 0 1679 1 species Rhizobium sp. N324 1703969 1495 0 Rhizobium sp. ACO-34A species 1 0 2103 1571470 Rhizobium sp. N1341 1 species 1703962 0 1 Rhizobium sp. N6212 1 species 1703965 0 7 1 species Rhizobium sp. N113 1703960 0 1 Rhizobium sp. N871 species 1 0 6 1703968 species 1 Rhizobium sp. N1314 0 359 1703961 359 0 1703966 Rhizobium sp. N731 species 1 1030 0 1301032 Rhizobium sp. IE4771 species 1 species 1 Rhizobium sp. IRBG74 1421 0 424182 2020311 0 1083 Rhizobium sp. Kim5 1 species Rhizobium sp. NT-26 species 1 0 1126 1125847 Rhizobium sp. N621 species 1 0 7 1703964 306 0 2020313 Rhizobium sp. TAL182 species 1 0 5 1703967 species 1 Rhizobium sp. N741 2028343 0 1851 Rhizobium sp. 10195 1 species 1981173 1146 0 1 species Rhizobium sp. NXC14 396 3005 0 Rhizobium phaseoli 1 species 398 1517 0 1 species Rhizobium tropici 0 17421 227292 no rank 10 1 3461 0 106591 Ensifer 22 genus 3 species 1 Ensifer adhaerens 0 1802 106592 species 1 Ensifer sojae 1637 0 716925 Sinorhizobium 373 genus 7 1 0 13960 28105 382 0 3179 Sinorhizobium meliloti 1 species 1998 0 194963 species 1 Sinorhizobium americanum 1 species group 663276 3663 0 3663 0 380 species 1 Sinorhizobium fredii 1 species Sinorhizobium medicae 110321 1216 0 2613772 3531 0 2 no rank 794846 0 1227 Sinorhizobium sp. CCBAU 05631 1 species species 1 Sinorhizobium sp. RAC02 2304 0 1842534 26 family 641 Bradyrhizobiaceae 41294 48264 0 1 952 0 1649510 1 genus 2 23 Variibacter Variibacter gotjawalensis 1 species 1333996 0 929 3 genus Nitrobacter 7 911 0 1718 1 912 1071 0 Nitrobacter hamburgensis 1 species 640 0 913 species 1 Nitrobacter winogradskyi 40136 0 1012 1 2 genus Oligotropha 24 988 0 40137 species 1 Oligotropha carboxidovorans genus 11 Bradyrhizobium 571 24493 0 374 1 2631580 0 13061 6 no rank 376 0 1956 Bradyrhizobium sp. 1 species Bradyrhizobium sp. SK17 1 species 2057741 0 2222 species 1 Bradyrhizobium sp. BTAi1 2412 0 288000 Bradyrhizobium sp. ORS 278 1 species 114615 2106 0 species 1 Bradyrhizobium sp. ORS 285 2213 0 115808 Bradyrhizobium sp. CCGE-LA001 species 1 0 2152 1223566 1429 0 1274631 species 1 Bradyrhizobium icense species 1 Bradyrhizobium oligotrophicum 0 2126 44255 1 species Bradyrhizobium japonicum 375 3775 0 Bradyrhizobium diazoefficiens species 1 0 3531 1355477 1 0 10871 1073 Rhodopseudomonas 110 genus 2 1076 0 10761 1 species Rhodopseudomonas palustris 0 8577 85413 1 genus 5 129 Bosea 1526658 2274 0 1 species Bosea vaviloviae no rank 3 0 6174 2653178 Bosea sp. RAC05 1 species 1842539 0 2199 1792307 0 1616 1 species Bosea sp. PAMC 26642 Bosea sp. AS-1 species 1 0 2359 2015316 228 Methylobacteriaceae family 15 1 33670 0 119045 3 genus 2282523 0 12485 Methylobacterium extorquens species 1 6674 0 408 1 species Methylobacterium zatmanii 29429 0 1837 0 3974 223967 species 1 Methylobacterium populi 1 407 0 18693 895 Methylobacterium 9 genus 1 species Methylobacterium nodulans 114616 0 2084 2070 0 334852 species 1 Methylobacterium oryzae Methylobacterium aquaticum species 1 2744 0 270351 1966 0 418223 species 1 Methylobacterium phyllosphaerae 31998 0 2285 Methylobacterium radiotolerans 1 species 0 6649 2615210 no rank 3 Methylobacterium sp. 4-46 1 species 426117 2488 0 1 species Methylobacterium sp. AMS5 925818 0 2093 species 1 Methylobacterium sp. C1 0 2068 1479019 2 genus 23 Microvirga 186650 0 2264 1 Microvirga ossetica 1 species 1882682 2241 0 1 1045 0 119043 13 Rhodobiaceae family 3 Parvibaculum 30 genus 2 1 0 1032 256616 Parvibaculum lavamentivorans 1 species 256618 0 1002 2036754 4362 0 1 4 family Chelatococcaceae 24 0 4338 28209 1 genus 3 102 Chelatococcus 444444 0 1704 1 species Chelatococcus daeguensis 1 no rank 2638111 2532 0 1702325 2532 0 Chelatococcus sp. CO-6 1 species 92 Xanthobacteraceae family 7 1 7850 0 335928 66 Azorhizobium 2 genus 1 6 0 2830 7 2764 0 Azorhizobium caulinodans 1 species 279 2504 0 1 2 genus 63 Xanthobacter 0 2441 280 species 1 Xanthobacter autotrophicus 1 152053 0 2424 60 Starkeya 2 genus Starkeya novella 1 species 921 0 2364 12 Bartonellaceae 18 family 1 772 5496 0 74 Bartonella 17 genus 1 773 0 5484 6 no rank 2645622 1882 0 1933906 0 321 Bartonella sp. JB15 1 species 1933910 0 358 Bartonella sp. A1379B 1 species species 1 Bartonella sp. Raccoon60 0 355 1933912 0 320 1933907 Bartonella sp. JB63 species 1 188 0 1933904 Bartonella sp. WD16.2 species 1 515256 340 0 Bartonella sp. 1-1C 1 species Bartonella grahamii 1 species 33045 0 240 Bartonella bacilliformis species 1 207 0 774 Bartonella henselae 1 species 38323 0 243 Bartonella apis 1 species 1686310 1610 0 species 1 Bartonella tribocorum 184 0 85701 0 136 1318743 species 1 Bartonella ancashensis Bartonella vinsonii 1 species 33047 128 0 species 1 Bartonella clarridgeiae 0 424 56426 Bartonella australis 1 species 388640 153 0 0 203 803 Bartonella quintana species 1 20 family 143 Phyllobacteriaceae 69277 0 25781 1 0 1607 449972 1 genus 2 18 Chelativorans 1 no rank 2643807 0 1589 1 species Chelativorans sp. BNC1 266779 1589 0 22 Aminobacter genus 2 1 2625 0 31988 Aminobacter aminovorans 1 species 83263 0 2603 Hoeflea 13 2 genus 1 274591 0 1320 1 no rank 2614931 0 1307 Hoeflea sp. IMCC20628 1 species 1620421 0 1307 1 0 1243 245876 52 Nitratireductor genus 2 Nitratireductor basaltis 1 species 472175 0 1191 1 17217 0 68287 Mesorhizobium 412 genus 9 0 2128 381 species 1 Mesorhizobium loti 325217 0 2239 1 no rank species 1 Mesorhizobium sp. WSM1497 2239 0 278153 1 species Mesorhizobium sp. B7 1670800 1280 0 Mesorhizobium opportunistum 1 species 593909 0 2197 2635 0 39645 species 1 Mesorhizobium ciceri 2167 0 2066070 species 1 Mesorhizobium japonicum 0 1785 536018 Mesorhizobium australicum species 1 1 species Mesorhizobium amorphae 71433 0 2374 28100 1626 0 1 2 genus Phyllobacterium 14 1 species Phyllobacterium zundukense 1867719 1612 0 family 6 37 Methylocystaceae 3788 0 31993 1 Methylosinus 74 2 genus 1 425 1829 0 426 1755 0 Methylosinus trichosporium 1 species 133 0 1922 1 3 genus Methylocystis 53 2625913 0 777 1 no rank species 1 Methylocystis sp. SC2 0 777 187303 species 1 Methylocystis bryophila 1092 0 655015 255475 0 8091 1 7 family 50 Aurantimonadaceae 123 Martelella 4 genus 1 293088 0 6095 1994 0 2629616 no rank 1 686597 1994 0 1 species Martelella sp. AD-3 species 1 Martelella mediterranea 0 1835 293089 species 1 Martelella endophytica 0 2143 1486262 15 Aureimonas 2 genus 1 414371 0 1946 0 1931 2615206 no rank 1 Aureimonas sp. AU20 1 species 1349819 1931 0 0 5285 119042 no rank 6 76 Pseudorhodoplanes genus 2 1 1689 0 1734920 1235591 0 1613 Pseudorhodoplanes sinuspersici 1 species 30 Hartmannibacter 2 genus 1 1572860 0 2209 0 2179 1482074 Hartmannibacter diazotrophicus species 1 16 Methyloceanibacter 2 genus 1 1484898 0 1387 1384459 0 1371 1 species Methyloceanibacter caenitepidi 45404 0 2031 1 5 family Beijerinckiaceae 11 1 815 0 532 12 Beijerinckia genus 2 0 803 533 Beijerinckia indica species 1 1205 0 120652 1 genus 2 15 Methylocella Methylocella silvestris 1 species 199596 0 1190 255473 0 456 1 3 order 1 Parvularculales family 2 455 0 255474 208215 0 455 1 2 genus 5 Parvularcula 450 0 208216 Parvularcula bermudensis species 1 order 2 1303 0 2800059 1303 0 2800061 family 2 1 74317 1303 0 34 Maricaulis 2 genus 0 1269 74318 species 1 Maricaulis maris Pelagibacterales 1 8 order 1 54526 1533 0 8 Pelagibacteraceae family 5 1 1231 0 1655514 2 genus 198251 0 560 1 no rank 2647897 0 254 Candidatus Pelagibacter sp. IMCC9063 1 species 1002672 0 254 Candidatus Pelagibacter ubique species 1 306 0 198252 2 no rank 1655516 663 0 859653 469 0 1 species alpha proteobacterium HIMB5 744985 0 194 1 species alpha proteobacterium HIMB59 2 genus Candidatus Fonsibacter 1 2045213 301 0 1 species 1 Candidatus Fonsibacter ubiquis 300 0 1925548 0 5520 82117 no rank 8 1 0 2223 1632780 82 Phreatobacter genus 2 Phreatobacter sp. S-12 species 1 0 2141 1868589 genus 2 Polymorphum 10 0 1684 991903 1 Polymorphum gilvum 1 species 991904 0 1674 213485 0 1078 1 2 genus 14 Micavibrio Micavibrio aeruginosavorus 1 species 349221 0 1064 0 535 62654 clade 2 genus 2 Candidatus Puniceispirillum 1 535 0 767891 1 0 534 767892 Candidatus Puniceispirillum marinum species 1 Caulobacterales 312 order 20 1 0 27381 204458 1 76892 27069 0 482 Caulobacteraceae 19 family 81440 0 759 1 no rank 1759059 759 0 1 species Caulobacteraceae bacterium OTSz_A_272 75 12512 0 1 6 genus Caulobacter 231 69395 0 1460 Caulobacter henricii 1 species Caulobacter mirabilis 1 species 69666 2334 0 species 1 Caulobacter vibrioides 4090 0 155892 0 2348 2648921 no rank 1 1 species Caulobacter sp. K31 366602 2348 0 2049 0 88688 Caulobacter segnis species 1 2324 0 20 1 genus 2 Phenylobacterium 73 species 1 Phenylobacterium zucineum 0 2251 284016 41275 0 9230 1 7 genus Brevundimonas 225 species 1 Brevundimonas vesicularis 1079 0 41276 0 1892 74313 Brevundimonas subvibrioides species 1 588932 0 1511 1 species Brevundimonas naejangsanensis 2622653 0 4523 3 no rank 0 1912 1938605 species 1 Brevundimonas sp. LM2 1152 0 1827469 species 1 Brevundimonas sp. GW460-12-10-14-LB2 1532555 1459 0 Brevundimonas sp. DS20 1 species 76890 0 1762 1 2 genus 56 Asticcacaulis 0 1706 78587 species 1 Asticcacaulis excentricus 13 Magnetococcales 4 order 1 1191478 977 0 family 3 1 Magnetococcaceae 0 964 1191479 1 162171 963 0 1 2 genus 1 Magnetococcus 1 species Magnetococcus marinus 1124597 962 0 1 0 104498 204455 613 Rhodobacterales order 91 Rhodobacteraceae 1874 family 90 1 0 103885 31989 genus 2 33 Leisingera 0 1719 191028 1 1 species Leisingera methylohalidivorans 133924 1686 0 97050 0 2840 1 3 genus 5 Ruegeria 986 0 2625375 no rank 1 species 1 Ruegeria sp. TM1040 986 0 292414 1849 0 89184 Ruegeria pomeroyi species 1 11 Halocynthiibacter genus 2 1 0 410 1579315 Halocynthiibacter arcticus 1 species 1579316 399 0 0 5971 34008 1 genus 4 Rhodovulum 59 no rank 2 3084 0 2631432 1 species Rhodovulum sp. P5 1564506 0 1507 species 1 Rhodovulum sp. MB263 1577 0 308754 35806 0 2828 1 species Rhodovulum sulfidophilum 1494 0 309512 genus 1 215813 1494 0 1 species Dinoroseobacter shibae 2211641 1389 0 1 genus 1389 0 245188 Loktanella vestfoldensis species 1 1 74030 1111 0 1 Roseovarius 2 genus Roseovarius mucosus species 1 0 1110 215743 genus 2 3 Planktomarina 0 421 1284657 1 species 1 Planktomarina temperata 418 0 1284658 no rank 2 0 2083 58840 Rhodobacteraceae bacterium QY30 species 1 1411 0 2033435 0 672 1904441 Rhodobacteraceae bacterium species 1 2 genus 2433 0 1773 Roseobacter litoralis species 1 0 1051 42443 722 0 2434 Roseobacter denitrificans species 1 1 9654 0 1060 126 Rhodobacter genus 5 species 1 Rhodobacter capsulatus 1830 0 1061 0 3035 196779 no rank 2 Rhodobacter sp. LPB0142 1 species 1850250 0 1352 1683 0 2033869 Rhodobacter sp. CZR27 species 1 Rhodobacter sphaeroides species 1 0 4663 1063 1 159345 0 1297 6 Roseibacterium 2 genus Roseibacterium elongatum species 1 0 1291 159346 genus 1 Loktanella 11 0 245186 Defluviimonas 11 2 genus 1 1097466 0 2079 Defluviimonas alba 1 species 1335048 0 2068 2 genus 3 Thioclava 285107 0 1376 1 1 species Thioclava nitratireducens 1915078 0 1373 genus 2 1 Marivivens 881 0 1759396 1 no rank 1 0 880 2622455 0 880 1920883 species 1 Marivivens sp. JLT3646 1 genus 188905 0 1143 1 no rank 2645469 0 1143 290400 0 1143 Jannaschia sp. CCS1 1 species Labrenzia 87 4 genus 1 478070 5418 0 1 species Labrenzia aggregata 187304 1809 0 2648686 0 3522 2 no rank Labrenzia sp. CP4 1 species 1674922 0 2069 1453 0 2021862 species 1 Labrenzia sp. VG12 436357 0 15 Thalassococcus 1 genus 1 74032 0 1583 9 Antarctobacter 2 genus Antarctobacter heliothermus 1 species 74033 1574 0 1 53945 0 1992 Octadecabacter 6 4 genus 834 0 53946 species 1 Octadecabacter arcticus 667 0 1217908 Octadecabacter antarcticus species 1 1458307 0 485 1 species Octadecabacter temperatus 9 Sulfitobacter genus 3 1 0 3207 60136 1 species Sulfitobacter pseudonitzschiae 1402135 0 1714 1 no rank 196795 1484 0 species 1 Sulfitobacter sp. AM1-D1 0 1484 1917485 1 977 0 119541 4 Rhodobaca genus 2 441209 973 0 Rhodobaca barguzinensis 1 species 1 genus 1649279 1486 0 Ruegeria mobilis 1 species 379347 1486 0 5 genus 130 Phaeobacter 302485 9221 0 1 773 0 1844006 species 1 Phaeobacter porticola 0 2154 1580596 Phaeobacter piscinae species 1 3178 0 60890 Phaeobacter gallaeciensis species 1 0 2986 221822 Phaeobacter inhibens species 1 Sagittula 12 2 genus 1 58842 0 2628 2624628 2616 0 1 no rank 2009329 2616 0 1 species Sagittula sp. P11 genus 2 0 4940 263377 no rank 1 0 2522 2640570 Yangia sp. CCB-MM3 1 species 1792508 0 2522 Thiobacimonas profunda 1 species 1229727 0 2418 genus 2 Confluentimicrobium 10 0 1821 1609958 1 1 no rank 2643318 0 1811 1609966 1811 0 Confluentimicrobium sp. EMB200-NS6 1 species 9 genus Paracoccus 282 265 16202 0 1 Paracoccus yeei species 1 2932 0 147645 Paracoccus sp. CBA4604 1 species 2065379 0 1802 1 species Paracoccus denitrificans 266 2610 0 1945662 1520 0 1 species Paracoccus contaminans 0 1775 1077935 species 1 Paracoccus zhejiangensis 1511 0 246570 no rank 1 1529068 0 1511 Paracoccus sp. BM15 1 species Paracoccus aminophilus species 1 1773 0 34003 1997 0 34004 species 1 Paracoccus aminovorans 1 360528 0 2385 Pelagibaca 19 2 genus Pelagibaca abyssi 1 species 1250539 0 2366 1 0 3150 227873 16 Pannonibacter genus 2 Pannonibacter phragmitetus species 1 3134 0 121719 Tateyamaria 4 genus 2 1 1183 0 299261 Tateyamaria omphalii species 1 1179 0 299262 3 genus 17 Ketogulonicigenium 92944 2738 0 1 Ketogulonicigenium vulgare species 1 1240 0 92945 92947 0 1481 Ketogulonicigenium robustum 1 species 5 genus 50 Celeribacter 875170 5302 0 1 0 1375 1411902 species 1 Celeribacter manganoxidans species 1 Celeribacter indicus 0 1890 1208324 Celeribacter ethanolicus 1 species 1758178 0 1498 species 1 Celeribacter marinus 489 0 1397108 2111 0 367771 1 genus 2 25 Marinovum 2086 0 42444 species 1 Marinovum algicola 6 order 2800060 0 2634 0 2634 69657 1 family 6 Hyphomonadaceae 31 Hyphomonas 34 genus 3 1 0 2179 85 2630699 0 832 1 no rank Hyphomonas sp. Mor2 1 species 1906738 0 832 1313 0 81032 species 1 Hyphomonas neptunium 2 genus Hirschia 1 2723 424 0 1 423 0 2724 species 1 Hirschia baltica phylum 2 0 418 2138240 2 class 1 Coprothermobacteria 2138243 0 418 1 417 0 2138246 order 1 417 0 2138247 family 1 68335 0 417 1 genus 35786 0 417 1 species Coprothermobacter proteolyticus 0 9693775 1783272 clade 1720 1 0 1533314 201174 Actinobacteria 143 phylum 655 4 no rank 1752188 1097 0 1848255 485 0 1 species Actinobacteria bacterium IMCC25003 Actinobacteria bacterium IMCC26103 species 1 0 255 1848756 215 0 1848754 Actinobacteria bacterium IMCC19121 species 1 142 0 1848755 Actinobacteria bacterium IMCC26077 species 1 32 class Coriobacteriia 1684 84998 0 134362 1 14 order Coriobacteriales 672 84999 0 46328 1 0 22030 84107 1 family 6 Coriobacteriaceae 2100 no rank 1 0 5356 84113 1531429 0 5356 Coriobacteriaceae bacterium 68-1-3 1 species genus 2 Coriobacterium 13 0 3067 33870 1 1 species Coriobacterium glomerans 33871 3054 0 1 102106 11507 0 Collinsella 65 2 genus 74426 11442 0 Collinsella aerofaciens 1 species family 7 Atopobiaceae 586 23626 0 1643824 1 0 8 1380 genus 1 Atopobium Olsenella 195 4 genus 1 133925 0 21453 2638792 4403 0 1 no rank Olsenella sp. oral taxon 807 1 species 712411 0 4403 5990 0 133926 species 1 Olsenella uli 1805478 0 10865 1 species Olsenella sp. Marseille-P2300 genus 1 1579 0 2767353 species 1 Atopobium parvulum 1579 0 1382 order 17 Eggerthellales 1688 86350 0 1643822 1 16 family Eggerthellaceae 15336 1643826 0 84662 1 genus 3 Eggerthella 178 21083 0 84111 1 1 species Eggerthella lenta 84112 17302 0 3603 0 2648737 no rank 1 Eggerthella sp. YY7918 species 1 0 3603 502558 1 14112 0 447020 2 Adlercreutzia genus 2 446660 0 14110 Adlercreutzia equolifaciens 1 species 1 2066 0 1981050 Phoenicibacter 3 genus 2 1944646 0 2063 1 species Phoenicibacter massiliensis 1 20277 0 644652 120 Gordonibacter genus 3 10884 0 1335613 species 1 Gordonibacter urolithinfaciens Gordonibacter massiliensis 1 species 1841863 0 9273 genus 1 773 0 84162 species 1 Cryptobacterium curtum 0 773 84163 genus 2 5 Denitrobacterium 3907 0 79603 1 1 species Denitrobacterium detoxificans 79604 0 3902 1 7108 0 84108 27 Slackia genus 2 84110 0 7081 Slackia heliotrinireducens 1 species 0 2093 84992 1 class 7 Acidimicrobiia 21 6 order Acidimicrobiales 32 84993 0 2072 1 3 family Acidimicrobiaceae 24 84994 0 471 1 1 53634 447 0 Acidimicrobium 4 2 genus 0 443 53635 species 1 Acidimicrobium ferrooxidans family 2 1569 0 2448023 1 1569 0 682522 9 Ilumatobacter genus 2 Ilumatobacter coccineus 1 species 467094 0 1560 1497346 3065 0 1 5 class Thermoleophilia 17 Solirubrobacterales 108 4 order 1 588673 3048 0 41 Conexibacteraceae 3 family 1 320583 2940 0 0 2899 191494 1 genus 2 Conexibacter 152 Conexibacter woesei 1 species 191495 0 2747 84995 3007 0 1 6 class Rubrobacteria 39 1 2968 0 84996 Rubrobacterales 73 order 5 4 family 16 Rubrobacteraceae 84997 0 2895 1 1 42255 0 2879 60 Rubrobacter 3 genus 0 1933 49319 Rubrobacter xylanophilus species 1 42256 0 886 Rubrobacter radiotolerans 1 species 600 class Actinobacteria 9536 1760 0 1389547 1 1 85004 634043 0 Bifidobacteriales 218 25 order 24 family 11654 Bifidobacteriaceae 31953 0 633825 1 2 Parascardovia 2 genus 1 196082 0 1650 78258 1648 0 1 species Parascardovia denticolens 2701 0 8352 1 genus 8352 0 2702 species 1 Gardnerella vaginalis 2520 Bifidobacterium genus 19 1 611387 0 1678 Bifidobacterium thermophilum species 1 3640 0 33905 Bifidobacterium angulatum species 1 7191 0 1683 1686 91169 0 1 2 species 28369 Bifidobacterium catenulatum 630129 0 62800 1 subspecies Bifidobacterium kashiwanohense 638619 0 1676 Bifidobacterium actinocoloniiforme 1 species 1 species Bifidobacterium pseudocatenulatum 28026 0 241683 Bifidobacterium indicum 1 species 1691 1281 0 4622 0 1689 Bifidobacterium dentium species 1 1852 0 1684 Bifidobacterium asteroides species 1 130947 0 216816 Bifidobacterium longum species 1 1694 4190 0 1 species Bifidobacterium pseudolongum 1685 44875 0 1 species Bifidobacterium breve species 1 Bifidobacterium bifidum 0 48178 1681 35760 3132 0 Bifidobacterium choerinum 1 species Bifidobacterium adolescentis 1 species 1680 15198 0 Bifidobacterium animalis 1 species 28025 3121 0 species 1 Bifidobacterium coryneforme 1071 0 1687 Bifidobacterium scardovii species 1 5041 0 158787 0 782 196081 genus 1 1 species Scardovia inopinata 78259 782 0 82 order Streptomycetales 480 85011 0 194367 1 1 2062 193887 0 1302 Streptomycetaceae 81 family 6117 Streptomyces 75 genus 1 1883 181009 0 1 species Streptomyces lydicus 47763 0 5926 68570 0 2442 1 species Streptomyces albulus 1 species Streptomyces ambofaciens 1889 1982 0 0 2726 92644 species 1 Streptomyces malaysiensis 54571 3638 0 Streptomyces venezuelae 1 species 408015 2364 0 Streptomyces xiamenensis 1 species species 1 Streptomyces lavendulae 0 1969 1914 42684 0 2016 Streptomyces collinus 1 species 2593676 0 51703 24 no rank 0 1857 1751294 species 1 Streptomyces sp. 4F species 1 Streptomyces sp. Mg1 2223 0 465541 0 2455 1262452 species 1 Streptomyces sp. 769 Streptomyces sp. 3211 species 1 2199 0 1964449 2768 0 1725411 Streptomyces sp. CdTB01 species 1 Streptomyces sp. CLI2509 species 1 0 2056 1984801 1812480 2288 0 1 species Streptomyces sp. fd1-xmd 0 2096 1561022 Streptomyces sp. CCM_MD2014 species 1 2059884 2709 0 1 species Streptomyces sp. CMB-StM0423 0 1762 1661694 Streptomyces sp. Tue 6075 species 1 Streptomyces sp. CNQ-509 species 1 2371 0 444103 species 1 Streptomyces sp. PAMC 26508 0 1694 1265601 206662 0 2256 Streptomyces sp. FR-008 1 species 2135430 0 2425 1 species Streptomyces sp. P3 Streptomyces sp. SAT1 species 1 1908 0 1849967 1837283 0 1644 1 species Streptomyces sp. S8 1 species Streptomyces sp. WAC00288 2094021 0 1864 Streptomyces sp. SirexAA-E 1 species 862751 1339 0 1961713 2196 0 1 species Streptomyces sp. MOE7 1649184 1738 0 1 species Streptomyces sp. CFMR 7 2890 0 1841249 species 1 Streptomyces sp. RTd22 1996 0 1972846 species 1 Streptomyces sp. Sge12 Streptomyces sp. TN58 1 species 234612 1990 0 1 species Streptomyces sp. M56 1495638 2979 0 1169025 0 1492 Streptomyces pratensis 1 species 1907 2106 0 1 species Streptomyces glaucescens 29303 0 2957 1 species Streptomyces cattleya species 1 Streptomyces formicae 0 1856 1616117 1 species Streptomyces alboflavus 67267 2481 0 193462 1845 0 1 species Streptomyces niveus Streptomyces gilvosporeus species 1 0 2163 553510 Streptomyces albus species 1 4465 0 1888 1971 2022 0 Streptomyces noursei 1 species 2 species group 629295 4120 0 1482596 0 2243 1 species subgroup 1911 2243 0 1 species Streptomyces griseus 1 species subgroup 1482558 0 1877 1908 0 1877 1 species Streptomyces globisporus 0 2014 1940 Streptomyces albireticuli species 1 species 1 Streptomyces vietnamensis 0 2819 362257 1534 0 1355015 species 1 Streptomyces pluripotens 68214 2340 0 1 species Streptomyces griseochromogenes 2236 0 1969 Streptomyces chartreusis species 1 2157 0 38300 Streptomyces pristinaespiralis species 1 68280 2492 0 Streptomyces violaceusniger 1 species Streptomyces pactum 1 species 68249 0 3960 0 2041 1901 Streptomyces clavuligerus species 1 68202 1505 0 Streptomyces fulvissimus 1 species Streptomyces violaceoruber species 1 1715 0 1935 1 species Streptomyces lividans 1916 0 2319 Streptomyces parvulus species 1 2236 0 146923 1912 5747 0 Streptomyces hygroscopicus 1 species Streptomyces leeuwenhoekii species 1 0 2325 1437453 1477431 0 4465 2 species group 1 species Streptomyces coelicolor 1902 0 2267 42239 2198 0 Streptomyces sampsonii 1 species 2478 0 75293 species 1 Streptomyces autolyticus Streptomyces bingchenggensis 1 species 379067 3553 0 1926 2414 0 Streptomyces reticuli 1 species Streptomyces xinghaiensis species 1 1511 0 1038928 1950 1727 0 1 species Streptomyces peucetius 1 species Streptomyces sp. S10(2016) 1783515 2217 0 Streptomyces scabiei species 1 2488 0 1930 Streptomyces avermitilis species 1 0 2014 33903 1642299 0 2810 1 species Streptomyces alfalfae 164348 0 2464 Streptomyces puniciscabiei 1 species Streptomyces cyaneogriseus species 1 2449 0 68192 1 species Streptomyces rubrolavendulae 285473 0 1974 1 species Streptomyces sp. XZHG99 2049881 0 2022 1915 2593 0 Streptomyces lincolnensis 1 species genus 5 Kitasatospora 113 11576 0 2063 1 species 1 Kitasatospora setae 3060 0 2066 1 species Kitasatospora aureofaciens 1894 0 2621 68173 0 2160 1 species Kitasatospora albolonga 2633591 0 3622 1 no rank species 1 Kitasatospora sp. MMS16-BH015 3622 0 2018025 1 85013 8137 0 26 Frankiales 7 order 6 family Frankiaceae 82 74712 8111 0 1 1 1854 8029 0 132 Frankia 5 genus 1859 0 1877 Frankia alni 1 species 2578 0 298654 species 1 Frankia inefficax 1061 0 106370 Frankia casuarinae species 1 2381 0 2632575 no rank 1 298653 2381 0 1 species Frankia sp. EAN1pec 1 190574 0 85007 1648 Corynebacteriales order 162 1762 69224 0 1 56 family Mycobacteriaceae 336 0 20836 1866885 genus 13 species 1 Mycobacterium rhodesiae 1200 0 36814 1 species Mycobacterium chubuense 1800 0 1463 Mycobacterium vaccae species 1 0 1874 1810 0 1689 1791 species 1 Mycobacterium aurum 1842 0 134601 Mycobacterium goodii species 1 1771 1785 0 Mycobacterium phlei 1 species 1797 1522 0 Mycobacterium thermoresistibile 1 species 0 1301 1766 species 1 Mycobacterium fortuitum Mycobacterium litorale species 1 1628 0 758802 0 1516 1804 Mycobacterium gilvum species 1 1795 1360 0 1 species Mycobacterium neoaurum 2172 0 1772 species 1 Mycobacterium smegmatis 1484 0 110539 species 1 Mycobacterium vanbaalenii genus 1 0 636 697025 0 636 639313 Hoyosella subflava species 1 670516 0 5592 5 genus 1 species Mycobacterium stephanolepidis 1520670 809 0 1578165 795 0 Mycobacterium saopaulense 1 species 0 2357 36809 Mycobacterium abscessus species 1 1774 0 822 1 species Mycobacterium chelonae Mycobacterium immunogenum species 1 809 0 83262 1 39391 0 1763 Mycobacterium 3134 genus 34 species 1 Mycobacterium kansasii 0 1444 1768 4 species group 77643 3037 0 species 3 Mycobacterium tuberculosis 837 2276 0 1773 1 Mycobacterium africanum biotype 1 0 706 33894 733 0 1765 Mycobacterium bovis biotype 1 0 761 78331 species 1 Mycobacterium canettii 8 species group 120793 0 8512 515 Mycobacterium intracellulare 4 species 1 1767 2184 0 35617 335 0 1 subspecies Mycobacterium indicus pranii Mycobacterium yongonense 1 subspecies 1203599 411 0 0 923 222805 subspecies 1 Mycobacterium chimaera 0 443 1138383 Mycobacterium paraintracellulare species 1 1764 3055 0 Mycobacterium avium 1 species 1738 0 339268 Mycobacterium colombiense species 1 701042 0 1092 Mycobacterium marseillense 1 species Mycobacterium dioxanotrophicus 1 species 482462 1737 0 1051 0 1781 Mycobacterium marinum species 1 no rank 13 0 16111 2642494 1570328 0 1360 Mycobacterium sp. NRRL B-3805 1 species 1040 0 164757 species 1 Mycobacterium sp. JLS Mycobacterium sp. JS623 1 species 212767 1574 0 1920667 0 1495 1 species Mycobacterium sp. WY10 937 0 1561223 species 1 Mycobacterium sp. QIA-37 0 897 164756 Mycobacterium sp. MCS species 1 1545728 1264 0 Mycobacterium sp. EPa45 1 species 0 1913 1879023 Mycobacterium sp. djl-10 species 1 932 0 189918 Mycobacterium sp. KMS species 1 1363 0 2051552 species 1 Mycobacterium sp. PYR15 Mycobacterium sp. YC-RL4 1 species 1682113 0 1680 Mycobacterium sp. VKM Ac-1817D 1 species 1273687 0 1230 1168287 0 426 1 species Mycobacterium sp. MOTT36Y Mycobacterium haemophilum species 1 0 906 29311 species 1 Mycobacterium leprae 0 459 1769 1 species group 2249310 0 1035 Mycobacterium shigaense 1 species 722731 0 1035 species 1 Mycobacterium liflandii 0 831 261524 species 1 Mycobacterium ulcerans 1134 0 1809 2433 0 1073531 genus 2 0 1098 1788 species 1 Mycobacterium terrae 875328 0 1335 1 species Mycobacterium sinense Nocardiaceae 312 31 family 1 85025 46402 0 1 1817 17816 0 Nocardia 261 7 genus species 1 Nocardia seriolae 2659 0 37332 Nocardia brasiliensis species 1 3910 0 37326 Nocardia farcinica 1 species 37329 0 2513 Nocardia cyriacigeorgica species 1 4104 0 135487 37330 0 1847 Nocardia nova 1 species Nocardia terpenica 1 species 455432 0 2522 23 genus Rhodococcus 1226 1827 28274 0 1 1 species Rhodococcus rhodochrous 1829 0 1185 1830 0 1417 Rhodococcus ruber 1 species 1118 0 103816 Rhodococcus pyridinivorans species 1 1095 0 1828 Rhodococcus fascians species 1 1833 1049 0 1 species Rhodococcus erythropolis 1 species Rhodococcus aetherivorans 191292 0 1706 1 species Rhodococcus hoagii 43767 0 1427 Rhodococcus jostii species 1 1752 0 132919 species 1 Rhodococcus opacus 0 3710 37919 no rank 12 0 11814 192944 0 1112 1653478 Rhodococcus sp. PBTS 1 species 1 1 species Rhodococcus sp. MTM3W5.2 1805827 1244 0 0 660 1723645 Rhodococcus sp. 008 species 1 670 0 679318 Rhodococcus sp. WMMA185 species 1 0 947 935199 Rhodococcus sp. p52 species 1 Rhodococcus sp. YL-1 species 1 0 697 1045808 1653479 0 1060 Rhodococcus sp. PBTS 2 1 species 775 0 1570939 species 1 Rhodococcus sp. 2G 1807790 604 0 Rhodococcus sp. BH4 1 species 1033922 1842 0 1 species Rhodococcus sp. WB1 1564114 1322 0 Rhodococcus sp. B7740 1 species Rhodococcus sp. H-CA8f species 1 881 0 1727214 334542 0 775 Rhodococcus qingshengii 1 species family 52 564 Corynebacteriaceae 0 56996 1653 1 0 56432 1716 1 genus 51 Corynebacterium 1791 1692 0 2624378 no rank 2 1487956 0 852 1 species Corynebacterium sp. ATCC 6931 702967 0 840 Corynebacterium sp. NML98-0116 1 species 203263 1143 0 Corynebacterium aquilae 1 species 1 species Corynebacterium camporealensis 161896 871 0 1 species Corynebacterium singulare 161899 897 0 1 species Corynebacterium ureicelerivorans 401472 1059 0 species 1 Corynebacterium variabile 0 1352 1727 511 0 1719 Corynebacterium pseudotuberculosis species 1 Corynebacterium terpenotabidum species 1 835 0 89154 Corynebacterium humireducens 1 species 1223514 0 1961 1652495 0 402 1 species Corynebacterium crudilactis Corynebacterium kroppenstedtii species 1 501 0 161879 0 673 1050174 species 1 Corynebacterium epidermidicanis 1233 0 1121358 Corynebacterium doosanense species 1 1 species Corynebacterium glaucum 187491 0 1053 Corynebacterium glutamicum species 1 1807 0 1718 0 703 258224 Corynebacterium resistens species 1 1408191 0 983 1 species Corynebacterium deserti 0 1176 575200 species 1 Corynebacterium maris 748 0 28028 Corynebacterium flavescens species 1 Corynebacterium argentoratense species 1 602 0 42817 1721 0 821 Corynebacterium callunae 1 species 0 1239 152794 Corynebacterium efficiens species 1 Corynebacterium frankenforstense 1 species 1230998 1725 0 43771 1281 0 Corynebacterium urealyticum 1 species 758 0 1705 species 1 Corynebacterium stationis species 1 Corynebacterium testudinoris 1049 0 136857 1 species Corynebacterium aurimucosum 169292 1370 0 Corynebacterium falsenii 1 species 108486 1320 0 43770 2291 0 Corynebacterium striatum 1 species species 1 Corynebacterium phocae 675 0 161895 Corynebacterium kutscheri 1 species 35755 0 352 1231000 1197 0 Corynebacterium lactis 1 species 1 species Corynebacterium jeikeium 38289 2140 0 species 1 Corynebacterium ulcerans 905 0 65058 349751 1586 0 Corynebacterium marinum 1 species 0 492 571915 species 1 Corynebacterium mustelae 1 species Corynebacterium cystitidis 35757 0 441 160386 0 706 1 species Corynebacterium casei 1717 0 776 1 species Corynebacterium diphtheriae species 1 Corynebacterium simulans 0 1689 146827 0 678 92706 species 1 [Brevibacterium] flavum 1404244 0 970 Corynebacterium glyciniphilum 1 species 0 872 1697 species 1 Corynebacterium ammoniagenes Corynebacterium atypicum species 1 924 0 191610 species 1 Corynebacterium vitaeruminis 0 2666 38305 Corynebacterium uterequi 1 species 1072256 0 982 0 1536 225326 species 1 Corynebacterium halotolerans 191493 0 1666 1 species Corynebacterium sphenisci species 1 Corynebacterium imitans 1332 0 156978 697024 604 0 2 no rank 604 0 1847725 1 genus 2 Lawsonella 2 1528099 0 602 Lawsonella clevelandensis 1 species 85029 0 2241 1 4 family Dietziaceae 21 Dietzia 22 genus 3 1 2220 0 37914 499555 931 0 Dietzia timorensis 1 species 1 no rank 2617939 1267 0 712270 1267 0 1 species Dietzia sp. oral taxon 368 15 Tsukamurellaceae family 4 1 3296 0 85028 3 genus Tsukamurella 55 2060 3281 0 1 57704 2127 0 1 species Tsukamurella tyrosinosolvens Tsukamurella paurometabola species 1 1099 0 2061 20 Segniliparaceae family 3 1 0 968 316606 948 0 286801 1 genus 2 Segniliparus 17 931 0 286802 species 1 Segniliparus rotundus 1 0 9195 85026 Gordoniaceae 193 family 9 genus 8 181 Gordonia 0 9002 2053 1 2657482 0 2598 2 no rank Gordonia sp. KTR9 1 species 337191 0 1327 1271 0 2059875 species 1 Gordonia sp. YC-JH1 1 species Gordonia terrae 2055 1399 0 2054 993 0 1 species Gordonia bronchialis 1126 0 1004901 Gordonia iterans species 1 Gordonia polyisoprenivorans species 1 0 1465 84595 Gordonia phthalatica species 1 1240 0 1136941 52018 369 0 1 no rank Actinobacteria bacterium IMCC26256 1 species 1650658 0 369 85008 33159 0 1 20 order Micromonosporales 130 450 Micromonosporaceae family 19 1 33029 0 28056 1873 7314 0 1 4 genus Micromonospora 144 Verrucosispora maris species 1 0 1798 1003110 1 species Micromonospora aurantiaca 47850 0 2549 no rank 1 0 2823 2617518 0 2823 648999 species 1 Micromonospora sp. L5 25 Salinispora genus 3 1 3505 0 168694 0 1355 168695 Salinispora tropica species 1 2125 0 168697 Salinispora arenicola species 1 genus 6 Actinoplanes 230 14826 0 1865 1 8677 0 2626549 no rank 3 1 species Actinoplanes sp. SE50/110 134676 0 2651 0 2651 2033844 Actinoplanes sp. SE50 species 1 species 1 Actinoplanes sp. N902-109 3375 0 649831 1866 2890 0 Actinoplanes missouriensis 1 species 196914 3029 0 1 species Actinoplanes friuliensis Plantactinospora 97 genus 4 1 6929 0 673534 6832 0 2631981 no rank 3 2147 0 2108470 species 1 Plantactinospora sp. BC1 Plantactinospora sp. KBS50 species 1 0 2582 2024580 species 1 Plantactinospora sp. BB1 2103 0 2071627 1 genus Verrucosispora 84593 0 5 145 order 1380 Micrococcales 85006 0 141309 1 1 1677 0 145360 Sanguibacteraceae 17 family 3 54 Sanguibacter 2 genus 1 60919 1660 0 1 species Sanguibacter keddieii 60920 1606 0 1 0 4212 145357 50 Dermacoccaceae family 7 42 Kytococcus genus 2 1 1257 0 57499 1276 1215 0 Kytococcus sedentarius 1 species 1 0 1533 57495 Dermacoccus 23 genus 2 1510 0 1274 Dermacoccus nishinomiyaensis species 1 genus 2 Luteipulveratus 3 1372 0 745364 1 Luteipulveratus mongoliensis 1 species 571913 1369 0 1 85019 2494 0 23 Brevibacteriaceae 3 family 15 Brevibacterium genus 2 1 2471 0 1696 species 1 Brevibacterium linens 2456 0 1703 0 6695 85021 1 family 9 65 Intrasporangiaceae 0 1389 53457 1 genus 2 41 Janibacter Janibacter indicus species 1 0 1348 857417 83 Intrasporangium genus 2 1 0 1184 53357 1 species Intrasporangium calvum 53358 1101 0 1 267408 0 2086 Arsenicicoccus 51 2 genus 2663846 0 2035 1 no rank 1 species Arsenicicoccus sp. oral taxon 190 1658671 0 2035 265976 1971 0 1 2 genus 34 Serinicoccus Serinicoccus sp. JLT9 1 species 1758689 0 1937 1 0 50239 1268 2897 Micrococcaceae family 39 1375 0 1742992 1 genus 2 3 Paenarthrobacter 43663 1372 0 Paenarthrobacter aurescens 1 species Glutamicibacter 10 2 genus 1 1742989 0 2383 1 species Glutamicibacter arilaitensis 256701 0 2373 4370 0 57493 1 genus 4 51 Kocuria 1 species Kocuria flava 446860 0 1493 1308 0 71999 Kocuria palustris species 1 species 1 Kocuria rhizophila 1518 0 72000 1 genus 1645 470 0 1646 470 0 1 species Renibacterium salmoninarum 3 genus Rothia 3 32207 2884 0 1 Rothia mucilaginosa species 1 2141 0 43675 Rothia dentocariosa species 1 0 740 2047 39 Micrococcus genus 2 1 2012 0 1269 1 species Micrococcus luteus 1270 1973 0 genus 2 51 Neomicrococcus 1258 0 1868332 1 Neomicrococcus aestuarii species 1 1207 0 556325 2078575 0 607 1 genus 1618207 0 607 Arthrobacter sp. IHBB 11108 1 species genus 2 12 Sinomonas 1896 0 596707 1 Sinomonas atrocyanea species 1 1884 0 37927 genus 4 54 Pseudarthrobacter 5391 0 1742993 1 species 1 Pseudarthrobacter phenanthrenivorans 0 1854 361575 Pseudarthrobacter sulfonivorans 1 species 121292 1686 0 Pseudarthrobacter chlorophenolicus 1 species 85085 1797 0 24696 0 1663 1 genus 15 547 Arthrobacter 0 2147 37928 species 1 Arthrobacter crystallopoietes 235627 0 19697 12 no rank Arthrobacter sp. ZXY-2 1 species 1806905 1233 0 species 1 Arthrobacter sp. YN 1452 0 2020486 species 1 Arthrobacter sp. Rue61a 0 1061 1118963 species 1 Arthrobacter sp. PGP41 0 1502 2079227 1252 0 1771959 species 1 Arthrobacter sp. ATCC 21022 1357915 0 1560 Arthrobacter sp. QXT-31 1 species 1 species Arthrobacter sp. ERGS1:01 1704044 1801 0 Arthrobacter sp. YC-RL1 1 species 1652545 2338 0 species 1 Arthrobacter sp. LS16 2223 0 1690248 1 species Arthrobacter sp. U41 1849032 0 1887 1 species Arthrobacter sp. PAMC 25486 1494608 1696 0 Arthrobacter sp. FB24 species 1 0 1692 290399 2305 0 656366 Arthrobacter alpinus species 1 2 family 85022 333 0 genus 2 Jonesia 6 333 0 43673 1 43674 327 0 1 species Jonesia denitrificans 1 0 45757 85023 Microbacteriaceae 496 family 48 genus 6 335 Clavibacter 6609 0 1573 1 5 species Clavibacter michiganensis 1220 28447 6274 0 1 31964 0 1338 1 subspecies Clavibacter sepedonicus Clavibacter capsici subspecies 1 0 1128 1874630 Clavibacter nebraskensis subspecies 1 0 1228 31963 33014 1360 0 Clavibacter insidiosus 1 subspecies genus 2 Microcella 5 0 995 337004 1 1 species Microcella alkaliphila 279828 990 0 1149 0 33886 1 genus 3 14 Rathayibacter Rathayibacter tritici species 1 0 874 33888 Rathayibacter toxicus species 1 261 0 145458 Microbacterium 282 genus 14 1 0 17700 33882 2033 0 1269 Microbacterium testaceum 1 species 1630 0 36805 Microbacterium aurum species 1 no rank 8 10638 0 2609290 Microbacterium sp. str. 'China' 1 species 2103230 0 1455 1 species Microbacterium sp. BH-3-3-3 1906742 1385 0 1 species Microbacterium sp. XT11 367477 0 1247 1795053 1544 0 1 species Microbacterium sp. PAMC 28756 1714373 0 1653 1 species Microbacterium sp. No. 7 1696072 991 0 1 species Microbacterium sp. CGR1 1 species Microbacterium sp. TPU 3598 1938334 1257 0 1916917 0 1106 Microbacterium sp. 1.5R 1 species 1349 0 300019 species 1 Microbacterium paludicola 1 species Microbacterium chocolatum 84292 918 0 162426 1614 0 1 species Microbacterium hominis no rank 3 0 484 1655488 1655489 484 0 3 clade 529883 484 0 1 3 genus Rhodoluna 1 535712 201 0 Candidatus Rhodoluna planktonica 1 species Rhodoluna lacicola species 1 282 0 529884 genus 2 3 Cnuibacter 0 1311 1759331 1 Cnuibacter physcomitrellae species 1 0 1308 1619308 genus 1 0 1774 447237 0 1774 2626248 no rank 1 1795630 0 1774 Frondihabitans sp. PAMC 28766 1 species 1 270 0 1434032 1 Pontimonas genus 2 1 species Pontimonas salivibrio 1159327 0 269 2 genus 1 Agromyces 33877 0 1879 1 0 1878 453304 species 1 Agromyces aureus 1 69578 0 3484 Cryobacterium 61 3 genus Cryobacterium arcticum species 1 0 1610 670052 2649013 0 1813 1 no rank 1978566 1813 0 Cryobacterium sp. LW097 1 species 0 3209 110932 1 genus 2 Leifsonia 19 0 3190 1575 species 1 Leifsonia xyli 4 genus 82 Curtobacterium 2034 4240 0 1 1 species Curtobacterium pusillum 69373 1308 0 257496 2850 0 2 no rank 1 species Curtobacterium sp. MR_MD2014 1561023 0 1539 0 1311 1905847 Curtobacterium sp. BH-2-1-1 species 1 1 genus 1705353 389 0 708131 0 389 1 species Aurantimicrobium minutum 1 1768 0 518733 11 Microterricola genus 2 0 1757 412690 Microterricola viridarii species 1 0 91 577468 no rank 1 genus 1 91 0 2038 Tropheryma whipplei 1 species 2039 91 0 85020 0 10945 1 11 family 125 Dermabacteraceae 36739 0 684 1 2 genus Dermabacter 1 1 species Dermabacter vaginalis 1630135 0 683 genus 6 Brachybacterium 224 9536 0 43668 1 0 1726 2017485 Brachybacterium sp. VR2415 species 1 1940 0 2623841 no rank 1 species 1 Brachybacterium sp. P6-10-X1 0 1940 1903186 43669 2165 0 1 species Brachybacterium faecium 0 1764 2017484 Brachybacterium sp. VM2412 species 1 1331682 1717 0 Brachybacterium ginsengisoli 1 species 472568 600 0 1 2 genus Devriesea 2 472569 0 598 Devriesea agamarum 1 species Dermatophilaceae 5 3 family 1 85018 700 0 Dermatophilus 2 2 genus 1 1862 0 695 Dermatophilus congolensis 1 species 1863 693 0 1 0 9289 85017 112 Promicromonosporaceae family 9 254250 3207 0 1 3 genus Isoptericola 45 Isoptericola variabilis species 1 0 1475 139208 1 species Isoptericola dokdonensis 372663 1687 0 Cellulosimicrobium 49 genus 3 1 0 3860 157920 1710 0 1962 1 species Cellulosimicrobium cellulans 1 no rank 2624466 0 1849 1980001 0 1849 1 species Cellulosimicrobium sp. TH-20 0 2110 186188 1 genus 2 Xylanimonas 24 186189 0 2086 1 species Xylanimonas cellulosilytica 3 family Beutenbergiaceae 3 125316 0 1515 1 Beutenbergia 30 2 genus 1 84756 1512 0 0 1482 84757 species 1 Beutenbergia cavernae 1 85016 5982 0 30 Cellulomonadaceae 6 family 1 0 5952 1707 Cellulomonas 155 genus 5 0 1124 11 species 1 Cellulomonas gilvus species 1 Cellulomonas flavigena 1721 0 1711 Cellulomonas fimi species 1 0 1820 1708 0 1132 2620175 no rank 1 1132 0 2003551 species 1 Cellulomonas sp. PSBB021 4 order Actinopolysporales 3 622450 0 1474 1 1 622451 1471 0 28 Actinopolysporaceae 3 family 1849 0 1443 1 2 genus 27 Actinopolyspora 1416 0 414996 Actinopolyspora erythraea species 1 1 85010 67959 0 Pseudonocardiales 212 41 order 991 Pseudonocardiaceae family 40 1 67747 0 2070 1 genus 1851 0 1132 1852 1132 0 1 species Saccharomonospora viridis 1 2071 0 3086 Saccharothrix 9 2 genus 1 species Saccharothrix espanaensis 103731 3077 0 genus 6 Actinoalloteichus 129 0 8815 65496 1 no rank 2 0 3354 2644606 0 1532 2072503 species 1 Actinoalloteichus sp. AHMU CJ021 species 1 Actinoalloteichus sp. GBA129-24 1822 0 1612551 Actinoalloteichus hoggarensis 1 species 1470176 2062 0 1 species Actinoalloteichus hymeniacidonis 340345 1416 0 species 1 Actinoalloteichus sp. ADI127-7 1854 0 1612552 1813 17277 0 1 7 genus Amycolatopsis 226 0 2396 1814 species 1 Amycolatopsis methanolica 4425 0 2618356 no rank 2 species 1 Amycolatopsis sp. BJA-103 2137 0 1911175 1896961 0 2288 Amycolatopsis sp. AA4 1 species Amycolatopsis mediterranei species 1 0 3624 33910 Amycolatopsis japonica species 1 2292 0 208439 31958 0 4314 1 species Amycolatopsis orientalis 8 genus Pseudonocardia 284 1847 13570 0 1 240495 2178 0 1 species Pseudonocardia dioxanivorans 6 no rank 2619320 0 11108 1096856 0 2023 Pseudonocardia sp. EC080619-01 1 species species 1 Pseudonocardia sp. HH130629-09 1789 0 1641402 1688404 1986 0 1 species Pseudonocardia sp. EC080610-09 Pseudonocardia sp. EC080625-04 species 1 1725 0 1096868 species 1 Pseudonocardia sp. AL041005-10 1943 0 445576 Pseudonocardia sp. HH130630-07 1 species 1690815 1642 0 3066 0 1835 1 genus 2 Saccharopolyspora 20 Saccharopolyspora erythraea species 1 0 3046 1836 0 7063 40566 1 genus 3 223 Actinosynnema 1 species Actinosynnema pretiosum 42197 0 3536 3304 0 40567 species 1 Actinosynnema mirum 1 0 2576 2029 3 Kibdelosporangium genus 2 Kibdelosporangium phytohabitans 1 species 860235 2573 0 165301 0 2945 1 2 genus Lentzea 24 Lentzea guizhouensis species 1 0 2921 1586287 1 1503 0 142577 24 Prauserella genus 2 1479 0 530584 Prauserella marina species 1 1 0 3559 43356 Kutzneria 10 genus 2 3549 0 43357 species 1 Kutzneria albida 0 2164 674734 1 genus 2 9 Alloactinosynnema 2636053 2155 0 1 no rank Alloactinosynnema sp. L-07 species 1 2155 0 1653480 4 order Kineosporiales 2 622452 2346 0 1 family 3 Kineosporiaceae 58 2344 0 83778 1 1 33981 2286 0 17 Kineococcus 2 genus 131568 0 2269 1 species Kineococcus radiotolerans 2232 0 85014 1 order 4 Glycomycetales 2 1 2230 0 85034 Glycomycetaceae 100 family 3 1 0 2130 283810 23 Stackebrandtia genus 2 283811 2107 0 Stackebrandtia nassauensis 1 species 1 0 6160 1643682 Geodermatophilales 45 order 8 85030 0 6115 1 7 family 145 Geodermatophilaceae 80 Modestobacter genus 2 1 0 2622 88138 0 2542 477641 Modestobacter marinus species 1 Geodermatophilus 28 genus 2 1 2058 0 1860 1861 2030 0 1 species Geodermatophilus obscurus Blastococcus 15 2 genus 1 38501 1290 0 Blastococcus saxobsidens species 1 0 1275 138336 1 2039638 0 3366 Candidatus Nanopelagicales 12 12 order 2162846 3354 0 11 family Candidatus Planktophila 37 genus 7 1 2760 0 622681 555 0 1884913 Candidatus Planktophila lacus species 1 species 1 Candidatus Planktophila vernalis 402 0 1884907 species 1 Candidatus Planktophila versatilis 0 503 1884905 331 0 573600 species 1 Candidatus Planktophila limnetica 1 species Candidatus Planktophila sulfonica 1884904 0 188 744 0 1884914 species 1 Candidatus Planktophila dulcis 1 0 594 2039639 2 Candidatus Nanopelagicus genus 4 1 species Candidatus Nanopelagicus hibericus 1884915 171 0 Candidatus Nanopelagicus abundans species 1 0 270 1884916 1884634 151 0 1 species Candidatus Nanopelagicus limnes order 4 Catenulisporales 43 0 3630 414714 1 3 family 67 Catenulisporaceae 414877 3587 0 1 1 3520 0 414878 48 Catenulispora genus 2 304895 0 3472 Catenulispora acidiphila 1 species 88 Streptosporangiales 16 order 1 85012 0 21442 Streptosporangiaceae 108 5 family 1 2004 8994 0 1 2000 3402 0 Streptosporangium 69 2 genus 0 3333 2001 species 1 Streptosporangium roseum 2 genus Nonomuraea 114 83681 0 5484 1 1 no rank 2593643 0 5370 Nonomuraea sp. ATCC 55076 1 species 1909395 0 5370 3366 0 2012 1 family 3 34 Thermomonosporaceae genus 2 90 Thermomonospora 3332 0 2019 1 1 species Thermomonospora curvata 2020 0 3242 0 8994 83676 1 family 7 189 Nocardiopsaceae 1 1555 0 83677 Thermobifida 10 genus 2 2021 1545 0 1 species Thermobifida fusca genus 4 Nocardiopsis 131 7250 0 2013 1 0 2778 2014 Nocardiopsis dassonvillei species 1 2306 0 280236 Nocardiopsis gilva species 1 53437 2035 0 Nocardiopsis alba 1 species 2037 25458 0 1 20 order 42 Actinomycetales 19 family 3161 Actinomycetaceae 2049 0 25416 1 2 genus Trueperella 15 1069494 0 2477 1 Trueperella pyogenes 1 species 1661 0 2462 1 genus 2529408 1095 0 Actinomyces meyeri species 1 1095 0 52773 60 Mobiluncus 2 genus 1 2050 3776 0 3716 0 2051 species 1 Mobiluncus curtisii 1 13003 0 1654 425 Actinomyces genus 9 Actinomyces oris species 1 1945 0 544580 species 1 Actinomyces radicidentis 0 2280 111015 1 species Actinomyces sp. VUL4_3 1912795 313 0 0 726 1852377 species 1 Actinomyces pacaensis 5901 0 2609248 no rank 3 1896 0 2081702 species 1 Actinomyces sp. oral taxon 897 Actinomyces sp. Chiba101 1 species 1851395 0 1739 712122 0 2266 1 species Actinomyces sp. oral taxon 414 0 1413 1960083 Actinomyces gaoshouyii species 1 Actinotignum 9 genus 2 1 1007 0 1653174 Actinotignum schaalii 1 species 59505 0 998 28263 0 897 1 2 genus 2 Arcanobacterium Arcanobacterium haemolyticum 1 species 28264 895 0 7 Nakamurellales order 4 1 2561 0 1643684 Nakamurellaceae 35 family 3 1 0 2554 85031 1 53460 0 2519 Nakamurella 28 2 genus 0 2491 53461 species 1 Nakamurella multipartita 0 1471 1643818 no rank 2 8 Thermobispora genus 2 1 0 1471 147067 species 1 Thermobispora bispora 1463 0 2006 1 0 515 1643683 Acidothermales 5 order 4 85032 0 510 1 3 family 8 Acidothermaceae Acidothermus 8 2 genus 1 28048 502 0 28049 0 494 1 species Acidothermus cellulolyticus 0 39439 85009 1 order 34 193 Propionibacteriales 13125 0 85015 1 family 13 Nocardioidaceae 324 1 1839 5164 0 Nocardioides 82 4 genus 1 no rank 2615069 0 1890 1890 0 196162 Nocardioides sp. JS614 species 1 Nocardioides dokdonensis 1 species 450734 1790 0 Nocardioides sp. 78 species 1 0 1402 2045452 2040 0 1414 1 2 genus 24 Aeromicrobium Aeromicrobium erythreum 1 species 2041 0 1390 2 genus Pimelobacter 9 2044 2299 0 1 species 1 Pimelobacter simplex 2290 0 2045 2 genus 20 Micropruina 116071 1719 0 1 1 species Micropruina glycogenica 75385 1699 0 182639 2205 0 1 2 genus 40 Kribbella 0 2165 182640 species 1 Kribbella flavida 1 26121 0 31957 369 Propionibacteriaceae family 20 0 4247 1912216 1 genus 4 19 Cutibacterium Cutibacterium avidum species 1 1856 0 33010 Cutibacterium granulosum species 1 0 1036 33011 1747 1336 0 1 species Cutibacterium acnes 1 72763 8213 0 Tessaracoccus 83 5 genus Tessaracoccus aquimaris species 1 2281 0 1332264 1797 0 1610493 Tessaracoccus flavus species 1 1787 0 399497 Tessaracoccus flavescens species 1 1 no rank 2635419 2265 0 1909732 0 2265 1 species Tessaracoccus sp. T2.5-30 1 1266 0 29404 17 Microlunatus genus 2 1 species Microlunatus phosphovorus 29405 1249 0 1 4370 0 1743 101 Propionibacterium genus 3 no rank 1 0 920 2608905 920 0 671223 species 1 Propionibacterium sp. oral taxon 193 Propionibacterium freudenreichii 1 species 1744 3349 0 2801844 1572 0 1 genus 1572 0 1750 Pseudopropionibacterium propionicum species 1 1912215 0 2764 1 2 genus 12 Acidipropionibacterium species 1 Acidipropionibacterium acidipropionici 2752 0 1748 1 0 3320 203133 3 Propionimicrobium genus 2 1 no rank 2633994 3317 0 0 3317 1871034 Propionimicrobium sp. Marseille-P3275 species 1 clade 149 0 73335 1798711 20 Cyanobacteria phylum 149 1 0 73335 1117 3 order 1890505 0 435 3 family 4 Chroococcidiopsidaceae 1890528 435 0 1 genus 2 Chroococcidiopsis 1 431 0 54298 1 1 species Chroococcidiopsis thermalis 54299 430 0 1983111 311 0 1 no rank 0 311 718217 species 1 cyanobacterium endosymbiont of Epithemia turgida 1 0 17307 1161 42 Nostocales order 34 1219117 571 0 1 no rank 571 0 1940762 species 1 Nostocales cyanobacterium HT-58-2 1 Hapalosiphonaceae 3 family 1 1892263 0 635 1 Fischerella genus 2 1 634 0 1190 494603 633 0 1 no rank 1752063 0 633 Fischerella sp. NIES-3754 1 species 4885 0 2661849 family 8 4885 0 1186 1 genus 8 50 Calothrix 6 no rank 2619626 4220 0 618 0 99598 Calothrix sp. PCC 7507 species 1 species 1 Calothrix sp. NIES-2098 492 0 1954171 1407 0 2005469 Calothrix sp. NIES-4071 species 1 Calothrix sp. NIES-4101 1 species 2005461 747 0 Calothrix sp. 336/3 species 1 0 516 1337936 0 440 2005462 Calothrix sp. NIES-3974 species 1 32054 0 615 Calothrix parietina 1 species 3 family 7 Rivulariaceae 1185 0 1161 1 2 genus 3 Rivularia 373984 1154 0 1 no rank 1 0 1151 2676603 Rivularia sp. PCC 7116 1 species 373994 0 1151 Nostocaceae 32 family 18 1 10013 0 1162 3 Trichormus genus 3 1 0 1102 264688 1 species Trichormus variabilis 264691 0 596 503 0 1164 Trichormus azollae species 1 Anabaena 4 4 genus 1 1163 0 2494 no rank 2 0 1833 2619674 Anabaena sp. WA102 1 species 1647413 731 0 0 1102 46234 Anabaena sp. 90 species 1 657 0 1165 Anabaena cylindrica species 1 10 genus Nostoc 55 1177 6385 0 1 2593658 3665 0 7 no rank 103690 397 0 1 species Nostoc sp. PCC 7120 0 636 1618022 species 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' Nostoc sp. PCC 7107 1 species 317936 468 0 species 1 Nostoc sp. NIES-3756 0 541 1751286 1869241 0 477 Nostoc sp. CENA543 1 species 738 0 1261031 species 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 0 408 28072 Nostoc sp. PCC 7524 species 1 Nostoc flagelliforme species 1 0 1812 1306274 species 1 Nostoc punctiforme 853 0 272131 6 order Pleurocapsales 10 52604 1472 0 1 3 family 1890498 0 993 993 0 102115 1 genus 3 Stanieria 5 443 0 2642663 no rank 1 1 species Stanieria sp. NIES-3757 1807358 0 443 1 species Stanieria cyanosphaera 102116 0 545 0 469 1890500 family 2 1 44474 0 469 11 Pleurocapsa 2 genus 1 species Pleurocapsa minor 54308 0 458 1 307596 0 3398 Gloeobacteria 28 6 class 5 order 59 Gloeobacterales 307595 0 3370 1 1 3311 0 1890422 Gloeobacteraceae 12 family 4 0 3299 33071 1 genus 3 63 Gloeobacter 1929 0 33072 Gloeobacter violaceus species 1 1416614 0 1307 Gloeobacter kilaueensis 1 species 43 subclass 1301283 15387 0 1118 9509 0 1 23 order Chroococcales 24 family 7 Chroococcaceae 7 2533 0 1890464 1 1 669357 0 1547 Geminocystis 5 3 genus 0 1542 2625037 no rank 2 Geminocystis sp. NIES-3708 species 1 763 0 1615909 1 species Geminocystis sp. NIES-3709 1617448 0 779 Gloeocapsa 1 2 genus 1 102231 432 0 431 0 2623012 no rank 1 431 0 1173026 Gloeocapsa sp. PCC 7428 species 1 1 genus 268175 0 547 no rank 1 547 0 2648896 0 547 2005460 Chondrocystis sp. NIES-4102 species 1 4 family 24 Microcystaceae 1890449 1837 0 1 Microcystis 20 3 genus 1 1125 0 1813 0 1176 1126 Microcystis aeruginosa species 1 2643300 617 0 1 no rank 617 0 1967666 Microcystis sp. MC19 species 1 1 0 3689 1890450 1 Aphanothecaceae family 8 414 0 263510 genus 1 2546360 414 0 1 species 43989 0 414 Cyanothece sp. ATCC 51142 1 strain 1453359 0 182 1 genus 182 0 713887 Candidatus Atelocyanobacterium thalassa species 1 2 genus 28070 1514 0 563 0 2546359 species 1 Cyanothece sp. PCC 7822 1 strain 497965 0 563 1 species 2546356 951 0 65393 0 951 Cyanothece sp. PCC 7424 1 strain 0 450 92682 no rank 1 1 genus 76023 450 0 450 0 2632878 no rank 1 species 1 Halothece sp. PCC 7418 0 450 65093 2546365 0 1128 2 genus species 2 0 1128 2546366 strain 1 Cyanothece sp. PCC 8801 616 0 41431 0 512 395962 strain 1 Cyanothece sp. PCC 8802 1 Cyanobacteriaceae family 3 1 1426 0 1890452 102234 0 1425 1 2 genus 2 Cyanobacterium 379064 1423 0 Cyanobacterium aponinum 1 species 20 order 58 Oscillatoriales 1150 5878 0 1 14 Gomontiellaceae 3 family 1 1892255 486 0 2 genus 2 Crinalium 241421 472 0 1 1 species Crinalium epipsammum 241425 470 0 5 Coleofasciculaceae 3 family 1 1892251 1437 0 1 0 1432 63132 1 Geitlerinema genus 2 2648775 0 1431 1 no rank 1 species Geitlerinema sp. PCC 7407 1173025 1431 0 1892252 1319 0 4 family 3 Microcoleus 2 genus 1 44471 0 587 584 0 2642155 no rank 1 1173027 584 0 Microcoleus sp. PCC 7113 1 species genus 2 Trichodesmium 1 0 732 1205 1 0 731 1206 Trichodesmium erythraeum species 1 Oscillatoriaceae 10 6 family 1 1892254 0 1928 genus 3 14 Oscillatoria 1191 0 1158 1 Oscillatoria acuminata species 1 415 0 118323 1 species Oscillatoria nigro-viridis 482564 0 762 1155738 727 0 1 2 genus Moorea 1 1155739 726 0 Moorea producens 1 species family 3 9 Cyanothecaceae 0 650 1892249 1 2 genus Cyanothece 44 43988 0 641 1 no rank 1 0 597 2649277 Cyanothece sp. PCC 7425 species 1 597 0 395961 order 55 Synechococcales 514 0 35005 1890424 1 2 family 1890436 0 335 2 genus 5 Pseudanabaena 1152 0 335 1 0 330 2593292 no rank 1 82654 0 330 Pseudanabaena sp. PCC 7367 1 species 1 1890426 24903 0 133 Synechococcaceae 32 family 1 genus 13034 634 0 1 species Dactylococcopsis salina 292566 634 0 96 Cyanobium 3 genus 1 167375 0 5216 2627006 0 2639 1 no rank 2639 0 1851505 species 1 Cyanobium sp. NIES-981 Cyanobium gracile species 1 0 2481 59930 0 416 146785 genus 1 Thermosynechococcus elongatus species 1 0 416 146786 Synechococcus 415 26 genus 1 1129 18504 0 species 1 Synechococcus elongatus 871 0 32046 Synechococcus lividus species 1 0 491 33070 23 no rank 2626047 0 16727 0 1725 321327 Synechococcus sp. JA-3-3Ab species 1 422 0 316279 species 1 Synechococcus sp. CC9902 Synechococcus sp. KORDI-100 1 species 1280380 0 898 316278 0 852 Synechococcus sp. RCC307 1 species 0 1100 585425 species 1 Synechococcus sp. KORDI-52 293 0 64471 Synechococcus sp. CC9311 species 1 1 species Synechococcus sp. WH 8109 166314 0 876 0 1179 1916956 Synechococcus sp. SynAce01 species 1 Synechococcus sp. PCC 7117 1 species 195498 0 261 345 0 374982 Synechococcus sp. PCC 73109 species 1 32049 0 290 1 species Synechococcus sp. PCC 7002 Synechococcus sp. PCC 6312 species 1 340 0 195253 0 864 110662 Synechococcus sp. CC9605 species 1 321332 1112 0 Synechococcus sp. JA-2-3B'a(2-13) 1 species Synechococcus sp. WH 7803 species 1 0 794 32051 species 1 Synechococcus sp. NIES-970 0 409 1827144 431 0 374981 Synechococcus sp. PCC 7003 species 1 Synechococcus sp. UTEX 2973 species 1 814 0 1350461 195248 0 368 1 species Synechococcus sp. PCC 8807 1 species Synechococcus sp. PCC 7502 1173263 0 483 0 1038 585423 Synechococcus sp. KORDI-49 species 1 84588 0 932 Synechococcus sp. WH 8102 1 species 901 0 29410 Synechococcus sp. WH 8103 species 1 5 family Prochloraceae 1 1213 2961 0 1 1218 2960 0 1 4 genus Prochlorococcus 9 no rank 2 450 0 2627481 1 species Prochlorococcus sp. MIT 0604 1501268 0 197 1501269 0 253 1 species Prochlorococcus sp. MIT 0801 1219 0 2501 1 species Prochlorococcus marinus 1 1890438 0 3422 25 Leptolyngbyaceae 6 family 47251 3397 0 1 5 genus 6 Leptolyngbya 1184 571 0 1 species Leptolyngbya boryana 2650499 0 2820 3 no rank 1080068 0 1564 1 species Leptolyngbya sp. O-77 Leptolyngbya sp. NIES-3755 species 1 0 727 1752064 0 529 111781 Leptolyngbya sp. PCC 7376 species 1 0 583 2303730 family 2 genus 2 1 Halomicronema 0 583 170610 1 Halomicronema hongdechloris species 1 0 582 1209493 family 2 0 682 1890429 Acaryochloris 4 2 genus 1 155977 682 0 Acaryochloris marina species 1 678 0 155978 family 5 Merismopediaceae 3 0 1605 1890428 1 1 0 1602 1142 Synechocystis 35 genus 4 2640012 1567 0 3 no rank species 1 Synechocystis sp. IPPAS B-1465 599 0 2116702 Synechocystis sp. PCC 6803 1 species 1148 0 599 Synechocystis sp. PCC 6714 species 1 0 369 1147 1 200795 23168 0 Chloroflexi 4 46 phylum 1 0 2452 189775 Thermomicrobia 20 class 8 7 Thermomicrobiales 3 order 1 189776 0 631 2 family 13 Thermomicrobiaceae 189777 624 0 1 611 0 499 genus 1 500 611 0 Thermomicrobium roseum 1 species 4 subclass 85000 0 1801 4 order 44 Sphaerobacterales 85001 1801 0 1 0 1757 255728 suborder 3 0 1757 85002 1 family 3 Sphaerobacteraceae 9 0 1748 2056 1 genus 2 34 Sphaerobacter Sphaerobacter thermophilus 1 species 2057 0 1714 11 class Chloroflexia 16 32061 5624 0 1 0 5608 32064 1 order 10 35 Chloroflexales 1508595 3163 0 4 suborder 4 family Roseiflexaceae 25 1508635 0 3163 1 120961 3138 0 1 3 genus 14 Roseiflexus 2609473 1435 0 1 no rank 1 species Roseiflexus sp. RS-1 357808 0 1435 0 1689 120962 Roseiflexus castenholzii species 1 0 2410 1508594 suborder 5 1106 2410 0 1 5 family 7 Chloroflexaceae 1 1107 0 2403 Chloroflexus 55 4 genus species 1 Chloroflexus aggregans 0 824 152260 0 1524 1108 1 species 2 Chloroflexus aurantiacus 764 strain 1 Chloroflexus sp. Y-400-fl 0 760 480224 Ardenticatenia 103 5 class 1 1382928 3995 0 4 order 44 Ardenticatenales 1382929 0 3892 1 1382930 3848 0 1 3 family Ardenticatenaceae 50 2 genus Candidatus Promineofilum 29 1988031 3798 0 1 species 1 Candidatus Promineofilum breve 3769 0 1806508 11 Dehalococcoidia class 9 1 0 4285 301297 8 Dehalogenimonas 3 genus 1 670486 1485 0 552810 0 658 Dehalogenimonas lykanthroporepellens 1 species 0 819 1839801 Dehalogenimonas formicexedens species 1 1 0 2789 1202465 48 Dehalococcoidales order 5 4 family 50 Dehalococcoidaceae 1202464 2741 0 1 1 2691 0 61434 Dehalococcoides 5 genus 3 1 no rank 237581 446 0 446 0 1522671 species 1 Dehalococcoides sp. UCH007 Dehalococcoides mccartyi 1 species 61435 2240 0 class 5 Caldilineae 3 2102 0 475962 1 4 order 35 Caldilineales 475963 2099 0 1 475964 0 2064 1 3 family Caldilineaceae 7 0 2057 233191 1 genus 2 45 Caldilinea 0 2012 133453 Caldilinea aerophila species 1 292625 4706 0 1 7 class Anaerolineae 18 Anaerolineales 22 order 6 1 0 4688 292629 1 292628 0 4666 Anaerolineaceae 21 5 family 1 Anaerolinea 2 genus 1 233189 1564 0 species 1 Anaerolinea thermophila 0 1563 167964 genus 1 711 0 2019482 Brevefilum fermentans species 1 0 711 1986204 no rank 1 2370 0 1324991 1889813 0 2370 1 species Anaerolineaceae bacterium oral taxon 439 0 30479 544448 1 phylum 100 Tenericutes 3 Mollicutes 31 class 96 1 0 27529 31969 order 43 Mycoplasmatales 7 10469 0 2085 1 10462 0 2092 1 family 42 23 Mycoplasmataceae Mycoplasma 111 27 genus 1 2093 6598 0 Mycoplasma gallisepticum species 1 0 316 2096 species 1 Mycoplasma yeatsii 360 0 51365 2100 212 0 Mycoplasma hyorhinis 1 species Mycoplasma hyopneumoniae species 1 0 167 2099 444 0 2098 species 1 Mycoplasma hominis 1 species Mycoplasma wenyonii 65123 0 94 0 389 86660 species 1 Mycoplasma dispar Mycoplasma crocodyli species 1 508 0 50052 Mycoplasma canadense species 1 289 0 29554 143 0 2111 species 1 Mycoplasma arthritidis 0 152 57372 Mycoplasma suis species 1 28227 287 0 Mycoplasma penetrans 1 species 45362 0 166 Mycoplasma bovoculi 1 species Mycoplasma putrefaciens species 1 0 252 2123 species 1 Mycoplasma haemocanis 0 47 136241 Mycoplasma mobile 1 species 2118 246 0 2104 0 124 Mycoplasma pneumoniae 1 species 29501 0 140 1 species Mycoplasma haemofelis 0 362 2683645 no rank 1 362 0 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) species 1 0 97 984991 Mycoplasma parvum species 1 Mycoplasma ovis species 1 0 54 171632 0 143 2128 Mycoplasma flocculare species 1 656088 1421 0 3 species group 0 655 2102 Mycoplasma mycoides species 1 1 species Mycoplasma capricolum 2095 401 0 2105 365 0 Mycoplasma leachii 1 species 74 0 2097 Mycoplasma genitalium species 1 3196 0 2767358 genus 12 1 species Mycoplasma cynos 171284 208 0 28903 512 0 Mycoplasma bovis 1 species 1 species Mycoplasma pulmonis 2107 0 175 2094 209 0 1 species Mycoplasma arginini 29555 268 0 1 species Mycoplasma canis 2109 0 289 1 species Mycoplasma synoviae 291 0 2113 Mycoplasma californicum species 1 2110 0 232 Mycoplasma agalactiae 1 species 275 0 29553 species 1 Mycoplasma bovirhinis 221 0 2115 species 1 Mycoplasma fermentans 138 0 48003 species 1 Mycoplasma pullorum Mycoplasma bovigenitalium species 1 0 378 2112 2 genus 2129 645 0 2130 0 342 Ureaplasma urealyticum 1 species 303 0 134821 Ureaplasma parvum species 1 order 39 23 Entomoplasmatales 12484 0 186328 1 Spiroplasmataceae 34 family 24 1 8869 0 2131 325 Spiroplasma 23 genus 1 2132 0 8835 species 1 Spiroplasma kunkelii 0 421 47834 2137 0 230 1 species Spiroplasma apis 1 species Spiroplasma citri 2133 385 0 401 0 216944 Spiroplasma sabaudiense species 1 494 0 216935 species 1 Spiroplasma culicicola species 1 Spiroplasma monobiae 294 0 2136 0 399 216945 Spiroplasma syrphidicola species 1 Spiroplasma cantharicola species 1 351 0 362837 1 species Spiroplasma floricola 216937 0 318 216936 0 372 Spiroplasma diminutum 1 species 2637901 0 580 2 no rank 1898044 290 0 Spiroplasma sp. TU-14 1 species Spiroplasma sp. NBRC 100390 1 species 1914410 290 0 0 298 216933 Spiroplasma chrysopicola species 1 0 1177 2145 Spiroplasma taiwanense species 1 216942 0 524 1 species Spiroplasma litorale 216934 0 249 1 species Spiroplasma corruscae Spiroplasma clarkii 1 species 2139 306 0 Spiroplasma helicoides species 1 263 0 216938 315358 374 0 Spiroplasma eriocheiris 1 species 216946 335 0 Spiroplasma turonicum 1 species 1 species Spiroplasma mirum 2144 0 367 372 0 1114980 species 1 Spiroplasma atrichopogonis Entomoplasmataceae 11 family 14 1 0 3592 33925 1 0 2558 46239 63 Mesoplasma genus 8 Mesoplasma syrphidae species 1 365 0 225999 216427 214 0 Mesoplasma chauliocola 1 species 219745 0 290 1 species Mesoplasma tabanidae 2151 0 472 Mesoplasma florum 1 species 1 species Mesoplasma coleopterae 324078 0 275 Mesoplasma entomophilum 1 species 2149 326 0 0 553 138853 Mesoplasma lactucae species 1 1 46238 0 1023 18 Entomoplasma 5 genus 81459 312 0 1 species Entomoplasma melaleucae 0 273 215578 species 1 Entomoplasma somnilux 191 0 74700 Entomoplasma freundtii species 1 Entomoplasma luminosum 1 species 214888 0 229 Acholeplasmatales 1 order 13 1 0 4545 186329 family 12 Acholeplasmataceae 19 0 4544 2146 1 1021 0 33926 1 genus 6 Candidatus Phytoplasma 68 species group 3 0 589 85620 0 192 202462 species 1 Maize bushy stunt phytoplasma 1 species Onion yellows phytoplasma 100379 268 0 229545 0 129 1 species Aster yellows witches'-broom phytoplasma 85630 192 0 1 species group Candidatus Phytoplasma mali species 1 0 192 37692 85632 172 0 1 species group species 1 Candidatus Phytoplasma australiense 0 172 59748 genus 5 100 Acholeplasma 3504 0 2147 1 Acholeplasma palmae species 1 0 1080 38986 1 species Acholeplasma laidlawii 2148 783 0 61635 611 0 1 species Acholeplasma brassicae Acholeplasma oculi 1 species 35623 0 930 1 no rank 2799557 0 665 1912503 0 665 1 genus no rank 1 0 665 2624196 species 1 Candidatus Izimaplasma sp. HR1 0 665 1541959 0 2282 713063 no rank 2 1911684 1073 0 Tenericutes bacterium MO-XQ 1 species 0 1209 1911683 species 1 Tenericutes bacterium MZ-XQ 67819 0 1191 5 phylum Fimbriimonadia 5 class 5 1 0 1191 1663419 1 1663425 0 1186 6 Fimbriimonadales 4 order family 3 5 Fimbriimonadaceae 0 1180 1663426 1 Fimbriimonas 3 2 genus 1 1005038 0 1175 1172 0 1005039 species 1 Fimbriimonas ginsengisoli phylum 36 0 45192 1297 class 36 Deinococci 298 0 45192 188787 1 order 3 1322 0 2762275 11 Trueperaceae family 3 1 1322 0 332247 5 Truepera 2 genus 1 332248 1311 0 Truepera radiovictrix species 1 1306 0 332249 118964 0 29432 1 15 order Deinococcales 273 194 Deinococcaceae 14 family 1 183710 29159 0 1298 28965 0 1 13 genus Deinococcus 368 310783 1789 0 1 species Deinococcus deserti 1 species Deinococcus geothermalis 68909 2246 0 1513 0 432329 species 1 Deinococcus peraridilitoris no rank 1 2300 0 2623546 1 species Deinococcus sp. NW-56 2080419 0 2300 0 2750 1768108 Deinococcus actinosclerus species 1 Deinococcus swuensis 1 species 1182571 3415 0 1299 2562 0 1 species Deinococcus radiodurans 1 species Deinococcus maricopensis 309887 0 2337 1789 0 1182568 Deinococcus puniceus species 1 Deinococcus soli Cha et al. 2016 species 1 0 2272 1309411 0 2799 55148 Deinococcus proteolyticus species 1 0 2825 502394 species 1 Deinococcus gobiensis 17 order Thermales 245 68933 14140 0 1 1 13895 0 188786 Thermaceae 84 family 16 Oceanithermus 14 2 genus 1 208447 0 2538 species 1 Oceanithermus profundus 0 2524 187137 8 genus Thermus 243 270 7510 0 1 37636 0 686 1 species Thermus scotoductus 1 species Thermus aquaticus 271 0 1134 970 0 2619321 no rank 1 970 0 1111069 species 1 Thermus sp. CCB_US3_UF1 550 0 56956 species 1 Thermus brockianus Thermus parvatiensis 1 species 456163 835 0 274 0 2105 Thermus thermophilus 1 species 987 0 56957 species 1 Thermus oshimai 1 186191 0 972 1 Marinithermus 2 genus 971 0 186192 Marinithermus hydrothermalis species 1 Meiothermus 17 3 genus 1 65551 0 2791 Meiothermus ruber species 1 0 1680 277 Meiothermus silvanus 1 species 52022 0 1094 Firmicutes 362 phylum 727 1 7986568 0 1239 18 Erysipelotrichia 11 class 1 526524 0 34331 order 10 Erysipelotrichales 50 0 34313 526525 1 0 34263 128827 1 family 9 144 Erysipelotrichaceae 16516 0 544447 no rank 1 16516 0 1834207 Erysipelotrichaceae bacterium I46 species 1 45 Turicibacter 2 genus 1 191303 6319 0 no rank 1 0 6274 2638206 1712675 6274 0 1 species Turicibacter sp. H121 1729679 0 9049 1 2 genus Faecalibaculum 36 Faecalibaculum rodentium species 1 0 9013 1702221 22 Erysipelothrix genus 3 1 0 2235 1647 1514105 1128 0 1 species Erysipelothrix larvae 1648 0 1085 1 species Erysipelothrix rhusiopathiae 0 2349 33974 no rank 2 26 Ndongobacter 2 genus 1 1930845 0 2349 1 species Ndongobacter massiliensis 1871025 2323 0 19 class 50 Tissierellia 1737404 0 27709 1 2 no rank 1737407 0 1286 1 1582879 1286 0 30 Ezakiella 2 genus species 1 Ezakiella massiliensis 0 1256 1852374 order 16 Tissierellales 777 0 26373 1737405 1 family 12 5942 Peptoniphilaceae 23878 0 1570339 1 2 genus 19 Parvimonas 543311 2028 0 1 33033 0 2009 Parvimonas micra 1 species 7 Peptoniphilus 2 genus 1 162289 1683 0 1 no rank 2637196 1676 0 1 species Peptoniphilus sp. ING2-D1G 1912856 0 1676 1 1161127 0 8915 6 Murdochiella 2 genus Murdochiella vaginalis species 1 8909 0 1852373 genus 3 Anaerococcus 7 0 3175 165779 1 Anaerococcus prevotii 1 species 33034 1672 0 Anaerococcus mediterraneensis 1 species 1870984 0 1496 2135 0 150022 1 genus 2 Finegoldia 10 1260 2125 0 Finegoldia magna 1 species 3 family Gottschalkiaceae 14 2042895 0 1718 1 1704 0 1505664 1 genus 2 Gottschalkia 7 1697 0 1556 Gottschalkia acidurici species 1 1 0 2696 1676648 18 Limnochordia class 5 1676649 0 2678 1 4 order 75 Limnochordales 0 2603 1676650 1 family 3 15 Limnochordaceae 1 2588 0 1676651 34 Limnochorda genus 2 Limnochorda pilosa 1 species 1555112 2554 0 1 7070171 0 186801 652 Clostridia class 225 2770089 2638 0 4 order 1446 0 2770093 family 2 Thermosediminibacter 1 2 genus 1 291988 0 1446 1445 0 291990 species 1 Thermosediminibacter oceani 1192 0 2770092 family 2 2 genus Tepidanaerobacter 1 499228 1192 0 1 Tepidanaerobacter acetatoxydans species 1 1191 0 499229 186802 7027475 0 1 167 order 24106 Clostridiales family 5 40 Eubacteriaceae 25743 0 186806 1 1 0 1910 33951 Acetobacterium 8 genus 2 33952 0 1902 Acetobacterium woodii 1 species 1 23793 0 1730 1282 Eubacterium genus 2 Eubacterium limosum 1 species 1736 22511 0 1 2553612 0 186803 3312 Lachnospiraceae family 27 genus 1 0 241686 28050 [Eubacterium] eligens 1 species 39485 0 241686 Herbinix 21 2 genus 1 1663717 11285 0 Herbinix luporum species 1 11264 0 1679721 1 0 56772 830 124 Butyrivibrio genus 3 185008 28918 0 1 species Butyrivibrio hungatei 43305 0 27730 1 species Butyrivibrio proteoclasticus 191999 0 2719313 genus 1 208479 191999 0 1 species [Clostridium] bolteae genus 1 32794 0 2719231 0 32794 84030 [Clostridium] saccharolyticum species 1 11 Cellulosilyticum genus 2 1 5880 0 698776 29360 5869 0 1 species Cellulosilyticum lentocellum 0 486496 841 1 genus 2 Roseburia 85 species 1 Roseburia hominis 0 486411 301301 no rank 2 881536 0 186928 0 37125 712991 Lachnospiraceae bacterium oral taxon 500 species 1 39491 844411 0 1 species [Eubacterium] rectale 1 1506553 0 154841 Lachnoclostridium 871 4 genus 1871021 0 86854 1 species Lachnoclostridium phocaeense 2608895 53100 0 1 no rank 1 species Lachnoclostridium sp. YL32 1834196 0 53100 Lachnoclostridium phytofermentans species 1 0 14016 66219 Blautia 215 3 genus 1 572511 0 148993 species 1 Blautia hansenii 0 94981 1322 no rank 1 53797 0 2648079 Blautia sp. YL58 species 1 0 53797 1796616 1 207244 179324 0 199 Anaerostipes 2 genus Anaerostipes hadrus 1 species 649756 179125 0 153062 0 2569097 genus 1 [Eubacterium] hallii 1 species 39488 153062 0 Anaerotignum 30 genus 2 1 0 5632 2039240 28446 0 5602 Anaerotignum propionicum 1 species 0 250891 538999 no rank 10 2717089 0 104410 1 genus Mordavella sp. Marseille-P3756 species 1 104410 0 2086584 8643 0 543314 1 family 4 9 Clostridiales Family XIII. Incertae Sedis 143393 0 5065 [Eubacterium] sulci 1 species 2 genus 36 Mogibacterium 86331 0 3569 1 114527 3533 0 Mogibacterium diversum 1 species 0 3608 539000 1 family 3 Clostridiales Family XVII. Incertae Sedis 18 1 73918 3590 0 15 Thermaerobacter 2 genus 0 3575 73919 Thermaerobacter marianensis species 1 1 0 134230 1392389 1190 Intestinimonas genus 2 Intestinimonas butyriciproducens 1 species 1297617 0 133040 208 Peptococcaceae 29 family 1 186807 40665 0 1463 0 278993 1 genus 2 Thermincola 1 1 species Thermincola potens 863643 1462 0 5888 0 1562 1 genus 5 Desulfotomaculum 163 59610 843 0 1 species Desulfotomaculum reducens 0 1156 1565 Desulfotomaculum nigrificans species 1 1493 0 1833852 species 1 Desulfotomaculum ferrireducens 1564 0 2233 Desulfotomaculum ruminis 1 species 4 genus 59 Dehalobacter 56112 6780 0 1 1 species Dehalobacter restrictus 55583 2398 0 2635733 0 4323 2 no rank 0 2094 1147129 Dehalobacter sp. DCA species 1 Dehalobacter sp. CF 1 species 1131462 2229 0 1 genus 2282742 1346 0 Desulfotomaculum acetoxidans 1 species 58138 0 1346 1 0 1962 471826 16 Candidatus Desulforudis genus 2 1946 0 471827 Candidatus Desulforudis audaxviator species 1 Desulfosporosinus 144 4 genus 1 79206 5881 0 1 species Desulfosporosinus meridiei 79209 1966 0 1 species Desulfosporosinus orientis 1563 1617 0 885581 0 2154 Desulfosporosinus acidiphilus 1 species 3753 0 51514 1 genus 2 Dehalobacterium 16 51515 3737 0 1 species Dehalobacterium formicoaceticum 2 genus 1 Syntrophobotulus 51196 2111 0 1 2110 0 51197 Syntrophobotulus glycolicus species 1 2282740 2470 0 1 genus species 1 Desulfotomaculum gibsoniae 2470 0 102134 genus 5 Desulfitobacterium 104 0 8803 36853 1 0 1697 233055 Desulfitobacterium dichloroeliminans species 1 Desulfitobacterium dehalogenans 1 species 36854 1985 0 Desulfitobacterium metallireducens 1 species 142877 0 1593 Desulfitobacterium hafniense 1 species 49338 3424 0 0 1748 68298 1 family 5 5 Syntrophomonadaceae 1 Syntrophomonas 2 genus 1 862 0 788 0 787 863 Syntrophomonas wolfei species 1 129001 0 955 1 2 genus Syntrophothermus 3 Syntrophothermus lipocalidus 1 species 86170 952 0 1 157454 0 186804 Peptostreptococcaceae 567 family 12 3194 0 1481960 1 genus 2 7 Peptoclostridium 1731 0 3187 Peptoclostridium acidaminophilum 1 species 2237 0 1411023 no rank 1 Peptostreptococcaceae bacterium oral taxon 929 species 1 0 2237 2081703 1 0 1918 44259 4 Filifactor genus 2 143361 0 1914 1 species Filifactor alocis 2 genus Paeniclostridium 2 1849828 0 3674 1 species 1 Paeniclostridium sordellii 0 3672 1505 genus 2 Clostridioides 412 0 143056 1870884 1 0 142644 1496 Clostridioides difficile species 1 186831 0 2808 1 2 genus Acetoanaerobium 1 1511 2807 0 Acetoanaerobium sticklandii 1 species 1 40682 0 990719 25 Christensenellaceae family 3 990721 40657 0 1 2 genus Christensenella 870 0 39787 1805714 species 1 Christensenella massiliensis 1 4542 0 31984 27 Heliobacteriaceae family 3 1 0 4515 2697 Heliobacterium 97 genus 2 0 4418 35701 species 1 Heliobacterium modesticaldum 1 31979 0 153358 923 Clostridiaceae 41 family 1 3332 0 114627 Alkaliphilus 9 genus 3 Alkaliphilus metalliredigens species 1 0 1928 208226 0 1395 461876 species 1 Alkaliphilus oremlandii 1027 Clostridium genus 30 1 0 141238 1485 Clostridium tetani 1 species 1513 4542 0 Clostridium saccharoperbutylacetonicum 1 species 36745 0 4659 1 species Clostridium argentinense 29341 0 3343 Clostridium acetobutylicum 1 species 1488 3204 0 Clostridium taeniosporum 1 species 394958 2589 0 0 3426 1548 species 1 Clostridium scatologenes 1 species Clostridium botulinum 1491 14857 0 3456 0 1216932 Clostridium bornimense species 1 1 species Clostridium beijerinckii 1520 4941 0 169679 0 3734 Clostridium saccharobutylicum 1 species Clostridium chauvoei species 1 0 2705 46867 1 species Clostridium novyi 1542 2536 0 238834 2241 0 1 species Clostridium estertheticum 0 5098 1561 species 1 Clostridium baratii 0 5212 1492 Clostridium butyricum species 1 2175 0 1497 Clostridium formicaceticum species 1 5024 0 1534 species 1 Clostridium kluyveri 0 2119 1509 Clostridium sporogenes species 1 4973 0 1502 species 1 Clostridium perfringens species 1 Clostridium aceticum 0 2001 84022 1494 0 2339 1 species Clostridium cochlearium 2614128 0 34309 2 no rank 1 species Clostridium sp. BNL1100 755731 0 4768 29541 0 1042156 species 1 Clostridium sp. SY8519 Clostridium autoethanogenum species 1 3223 0 84023 1 species Clostridium carboxidivorans 217159 0 3433 1501 5252 0 1 species Clostridium pasteurianum Clostridium ljungdahlii 1 species 1538 3235 0 3481 0 1493 species 1 Clostridium cellulovorans species 1 Clostridium tyrobutyricum 2104 0 1519 1981033 337 0 Mordavella 1 genus 0 4491 390805 1 genus 2 29 Geosporobacter Geosporobacter ferrireducens 1 species 1424294 0 4462 49082 3037 0 1 4 genus Candidatus Arthromitus 149 3 no rank 2638829 2888 0 Candidatus Arthromitus sp. SFB-mouse 1 species 49118 0 905 1508644 886 0 Candidatus Arthromitus sp. SFB-mouse-NL 1 species Candidatus Arthromitus sp. SFB-rat-Yit species 1 0 1097 1041504 1 541000 0 3664142 1073 Ruminococcaceae 13 family 17613 0 253238 1 genus 2 Ethanoligenens 23 17590 0 253239 Ethanoligenens harbinense species 1 1263 0 62294 1 3 genus 198 Ruminococcus Ruminococcus albus 1 species 1264 0 17257 Ruminococcus bicirculans 1 species 1160721 44839 0 Faecalibacterium 2162 genus 2 1 0 3345980 216851 Faecalibacterium prausnitzii species 1 0 3343818 853 306 Flavonifractor genus 2 1 0 215487 946234 215181 0 292800 species 1 Flavonifractor plautii no rank 1 15506 0 2305133 species 1 Ruminococcaceae bacterium CPB6 0 15506 1572656 1890281 0 3 1 genus Herbivorax 1 no rank 552397 6186 0 0 6186 29343 [Clostridium] cellulosi species 1 44132 0 216572 1 family 3 11 Oscillospiraceae 459786 44121 0 1 2 genus Oscillibacter 189 0 43932 351091 Oscillibacter valericigenes species 1 3 family Symbiobacteriaceae 33 543349 0 5900 1 2733 5867 0 1 2 genus Symbiobacterium 57 0 5810 2734 Symbiobacterium thermophilum species 1 family 12 0 60500 2304686 1 0 4436 1637257 Mageeibacillus 4 genus 2 species 1 Mageeibacillus indolicus 0 4432 884684 3631 0 2304691 genus 1 [Clostridium] stercorarium species 1 3631 0 1510 1 no rank 2305130 32096 0 1834198 0 32096 1 species Ruminiclostridium sp. KB18 1 236752 0 1668 12 Fastidiosipila 2 genus 1656 0 236753 species 1 Fastidiosipila sanguinis genus 1 4244 0 2304693 [Clostridium] thermosuccinogenes species 1 0 4244 84032 9163 0 2304692 genus 3 1515 0 3314 1 species Ruminiclostridium thermocellum 1 species Herbivorax saccincola 1677857 2412 0 [Clostridium] clariflavum 1 species 288965 3437 0 genus 2 715 Ruminiclostridium 0 5262 1508657 1 1521 4547 0 [Clostridium] cellulolyticum 1 species order 37 66 Thermoanaerobacterales 0 33429 68295 1 family 2 0 616 227387 Thermodesulfobium 1 2 genus 1 227388 616 0 Thermodesulfobium narugense species 1 615 0 184064 1 15485 0 186814 Thermoanaerobacteraceae 72 family 18 33 Thermacetogenium genus 2 1 1452 0 140458 1 species Thermacetogenium phaeum 85874 0 1419 0 8377 1754 1 genus 9 328 Thermoanaerobacter Thermoanaerobacter italicus species 1 0 783 108150 Thermoanaerobacter wiegelii 1 species 46354 0 1057 2325 1488 0 1 species Thermoanaerobacter kivui 0 988 496866 Thermoanaerobacter pseudethanolicus species 1 1 species Thermoanaerobacter mathranii 583357 0 759 2636821 1986 0 2 no rank 0 1002 399726 Thermoanaerobacter sp. X514 species 1 Thermoanaerobacter sp. X513 1 species 573062 984 0 29323 988 0 Thermoanaerobacter brockii 1 species no rank 4 3608 0 42857 1 44260 0 2380 Moorella 11 2 genus 1525 0 2369 Moorella thermoacetica 1 species 1 42837 1228 0 Ammonifex 9 2 genus 0 1219 42838 Ammonifex degensii species 1 1 genus 129957 1014 0 species 1 Carboxydothermus hydrogenoformans 1014 0 129958 0 962 249529 genus 1 911092 962 0 Caldanaerobacter subterraneus 1 species 115 Thermoanaerobacterales Family III. Incertae Sedis 13 family 1 543371 0 15745 genus 3 34 Thermoanaerobacterium 4245 0 28895 1 0 2154 29329 species 1 Thermoanaerobacterium xylanolyticum species 1 Thermoanaerobacterium thermosaccharolyticum 0 2057 1517 44000 11385 0 1 9 genus 240 Caldicellulosiruptor 0 1261 55205 Caldicellulosiruptor owensensis species 1 Caldicellulosiruptor saccharolyticus 1 species 44001 1251 0 Caldicellulosiruptor kristjanssonii species 1 0 1376 52765 1 species Caldicellulosiruptor lactoaceticus 52766 1295 0 31899 1676 0 Caldicellulosiruptor bescii 1 species Caldicellulosiruptor hydrothermalis 1 species 413888 1117 0 1614 0 717609 Caldicellulosiruptor obsidiansis species 1 413889 1555 0 Caldicellulosiruptor kronotskyensis 1 species 543372 0 1517 1 3 family 12 Thermoanaerobacterales Family IV. Incertae Sedis 1 252965 0 1505 Mahella 2 2 genus 1 species Mahella australiensis 252966 0 1503 1 971 0 485256 14 Natranaerobiales order 4 Natranaerobiaceae 3 3 family 1 485255 957 0 1 375928 954 0 Natranaerobius 65 2 genus 0 889 375929 Natranaerobius thermophilus species 1 1 53433 0 5006 Halanaerobiales 2 12 order family 6 3 Halanaerobiaceae 0 2898 972 1 1 687 0 32636 Halothermothrix 10 genus 2 31909 0 677 1 species Halothermothrix orenii genus 3 Halanaerobium 36 2208 0 2330 1 1 species Halanaerobium hydrogeniformans 656519 0 1155 Halanaerobium praevalens species 1 1017 0 2331 1 53434 2106 0 Halobacteroidaceae 12 5 family 2 genus Acetohalobium 6 28186 0 1194 1 Acetohalobium arabaticum species 1 0 1188 28187 42417 0 900 1 2 genus Halobacteroides 2 0 898 42422 Halobacteroides halobius species 1 class 432 448 Bacilli 0 746367 91061 1 402764 0 186826 1 order 166 Lactobacillales 6601 0 703 263855 no rank 1 Lactobacillales bacterium species 1 0 703 1993866 family 8 Aerococcaceae 15 6440 0 186827 1 1 0 6425 1375 Aerococcus 100 genus 7 Aerococcus sanguinicola species 1 1729 0 119206 Aerococcus christensenii species 1 1378 0 87541 1376 1031 0 Aerococcus urinae 1 species Aerococcus urinaehominis 1 species 128944 758 0 661 0 51665 species 1 Aerococcus urinaeequi 0 768 1377 Aerococcus viridans species 1 81850 11142 0 1 18 family 9 Leuconostocaceae 1 4555 0 1243 Leuconostoc 96 genus 9 255248 0 538 Leuconostoc garlicum 1 species 1246 0 557 Leuconostoc lactis 1 species 1 species Leuconostoc citreum 33964 0 427 species 1 Leuconostoc carnosum 254 0 1252 no rank 1 238 0 2685106 species 1 Leuconostoc sp. C2 0 238 979982 Leuconostoc gelidum 1 species 1244 799 0 0 1278 1245 Leuconostoc mesenteroides species 1 136609 368 0 Leuconostoc kimchii 1 species 3 Oenococcus 2 genus 1 46254 528 0 0 525 1247 Oenococcus oeni species 1 genus 6 Weissella 31 6050 0 46255 1 species 1 Weissella ceti 561 0 759620 1249 0 419 1 species Weissella paramesenteroides 165096 534 0 1 species Weissella koreensis 504 0 1631871 species 1 Weissella jogaejeotgali 1 species Weissella cibaria 137591 0 4001 3360 Streptococcaceae 49 family 1 1300 249091 0 1301 0 155776 1 43 genus 7224 Streptococcus species 1 Streptococcus pyogenes 0 2160 1314 0 46097 671232 species group 3 33999 0 1328 Streptococcus anginosus species 1 1 species Streptococcus constellatus 76860 0 10700 Streptococcus intermedius species 1 0 1398 1338 Streptococcus uberis species 1 634 0 1349 Streptococcus suis species 1 0 17602 1307 8552 0 2608887 no rank 7 791 0 1839799 species 1 Streptococcus sp. FDAARGOS_192 Streptococcus sp. I-P16 1 species 1156433 2200 0 species 1 Streptococcus sp. 'group B' 631 0 1319 0 2184 1156431 species 1 Streptococcus sp. I-G2 1 species Streptococcus sp. NPS 308 1902136 897 0 Streptococcus sp. oral taxon 431 1 species 712633 0 563 Streptococcus sp. A12 species 1 0 1286 1759399 species group 2 0 2592 119603 1334 859 0 1 species Streptococcus dysgalactiae Streptococcus equi 1 species 1336 1733 0 Streptococcus gordonii species 1 2670 0 1302 0 574 1335 species 1 Streptococcus equinus Streptococcus marmotae species 1 0 1121 1825069 197614 6487 0 1 species Streptococcus pasteurianus 630 0 257758 Streptococcus pseudopneumoniae species 1 1 species Streptococcus infantarius 102684 8351 0 1318 0 886 Streptococcus parasanguinis 1 species 7127 0 150055 Streptococcus lutetiensis species 1 1304 3200 0 Streptococcus salivarius 1 species species 1 Streptococcus pantholopis 0 1193 1811193 1346 2037 0 Streptococcus iniae 1 species Streptococcus parauberis species 1 0 1119 1348 1 species Streptococcus pluranimalium 82348 468 0 315405 0 2712 1 species Streptococcus gallolyticus species 1 Streptococcus pneumoniae 2349 0 1313 Streptococcus agalactiae species 1 0 10759 1311 45634 1000 0 Streptococcus cristatus 1 species species 1 Streptococcus acidominimus 3217 0 1326 28037 3123 0 Streptococcus mitis 1 species 1888195 0 470 1 species Streptococcus himalayensis 0 748 1814128 species 1 Streptococcus halotolerans 1303 0 2512 1 species Streptococcus oralis species 1 Streptococcus merionis 0 634 400065 1305 2494 0 Streptococcus sanguinis 1 species 59310 1394 0 Streptococcus macedonicus 1 species Streptococcus thermophilus 1 species 1308 2732 0 1 species Streptococcus mutans 1309 0 908 1 1357 89955 0 17 Lactococcus 5 genus 1363 0 76259 1 species Lactococcus garvieae 1358 0 12110 1 species Lactococcus lactis 1366 901 0 1 species Lactococcus raffinolactis 1 species Lactococcus piscium 1364 0 668 Carnobacteriaceae 16 family 11 1 5088 0 186828 1470540 0 1216 1 3 genus Jeotgalibaca 7 2621505 0 743 1 no rank Jeotgalibaca sp. PTS2502 1 species 1903686 743 0 1 species Jeotgalibaca dankookensis 708126 0 466 1 695 0 191769 Marinilactibacillus 4 genus 2 0 691 2632303 no rank 1 0 691 1911586 Marinilactibacillus sp. 15R species 1 genus 5 Carnobacterium 40 3161 0 2747 1 species 1 Carnobacterium maltaromaticum 0 989 2751 147709 797 0 Carnobacterium inhibens 1 species 2 no rank 257487 1335 0 208596 0 635 1 species Carnobacterium sp. 17-4 1564681 700 0 1 species Carnobacterium sp. CP1 1 81852 0 55032 Enterococcaceae 116 20 family 1 1350 51197 0 4039 Enterococcus 12 genus Enterococcus thailandicus species 1 0 875 417368 species 1 Enterococcus faecalis 9016 0 1351 species 1 Enterococcus faecium 23527 0 1352 37734 0 1999 Enterococcus casseliflavus 1 species 997 0 1354 species 1 Enterococcus hirae 2608891 0 7115 3 no rank species 1 Enterococcus sp. FDAARGOS_163 0 1570 2060306 2060307 0 4007 1 species Enterococcus sp. FDAARGOS_375 1 species Enterococcus sp. CR-Ec1 2057791 0 1538 species 1 Enterococcus mundtii 1110 0 53346 53345 1283 0 Enterococcus durans 1 species 0 1236 2005703 species 1 Enterococcus wangshanyuanii genus 2 4 Melissococcus 686 0 33969 1 33970 0 682 1 species Melissococcus plutonius Tetragenococcus 1 genus 2 1 1514 0 51668 51669 1513 0 1 species Tetragenococcus halophilus 23 Vagococcus genus 3 1 1519 0 2737 species 1 Vagococcus penaei 583 0 633807 Vagococcus teuberi 1 species 519472 0 913 68667 0 33958 1 family 58 Lactobacillaceae 623 1 genus 2767892 778 0 778 0 240427 species 1 Lactobacillus paracollinoides 1 genus 2767876 0 3308 1 species Lactobacillus amylophilus 1603 0 3308 1578 0 26193 1 16 genus Lactobacillus 2992 species 1 Lactobacillus gasseri 1106 0 1596 4 no rank 2620435 1635 0 2108362 470 0 1 species Lactobacillus sp. D1501 2099788 0 374 1 species Lactobacillus sp. CBA3605 1545702 0 365 Lactobacillus sp. wkB8 1 species 0 426 2099789 Lactobacillus sp. CBA3606 species 1 1604 7614 0 Lactobacillus amylovorus 1 species 33959 3433 0 Lactobacillus johnsonii 1 species Lactobacillus acetotolerans 1 species 1600 0 396 species 1 Lactobacillus delbrueckii 2958 0 1584 657 0 267818 Lactobacillus kefiranofaciens species 1 1 species Lactobacillus jensenii 109790 696 0 species 1 Lactobacillus gallinarum 0 1461 52242 Lactobacillus amylolyticus 1 species 83683 778 0 species 1 Lactobacillus acidophilus 691 0 1579 1 species Lactobacillus helveticus 1587 0 1776 1253 0 3727 1 6 genus Pediococcus 18 1670797 1229 0 1 species group species 1 Pediococcus acidilactici 0 1229 1254 738 0 187452 Pediococcus claussenii species 1 0 341 114090 species 1 Pediococcus inopinatus Pediococcus pentosaceus species 1 0 843 1255 Pediococcus damnosus species 1 558 0 51663 1 genus 2767877 423 0 423 0 148814 Lactobacillus kunkeei species 1 0 2403 2767886 genus 3 1 species Lactobacillus brevis 1580 1014 0 0 764 267363 Lactobacillus zymae species 1 Lactobacillus koreensis 1 species 637971 0 625 genus 4 9055 0 2767887 89059 0 468 1 species Lactobacillus acidipiscis Lactobacillus agilis species 1 872 0 1601 2112 0 1624 species 1 Lactobacillus salivarius 0 5603 1623 Lactobacillus ruminis species 1 3 genus 2759736 4540 0 1597 0 1402 Lactobacillus paracasei 1 species 1582 1804 0 Lactobacillus casei 1 species 1 species Lactobacillus rhamnosus 47715 0 1334 2742598 0 4424 3 genus 1613 1349 0 Lactobacillus fermentum 1 species Lactobacillus reuteri species 1 0 1335 1598 1 species Lactobacillus mucosae 97478 0 1740 2113 0 2767885 genus 2 Lactobacillus curvatus 1 species 28038 927 0 Lactobacillus sakei species 1 1186 0 1599 2767889 1250 0 2 genus 439 0 375175 Lactobacillus backii species 1 species 1 Lactobacillus coryniformis 0 811 1610 genus 1 0 482 2767890 1 species Lactobacillus hokkaidonensis 1193095 0 482 genus 3 1724 0 2767893 species 1 Lactobacillus parabuchneri 434 0 152331 1 species Lactobacillus buchneri 1581 822 0 Lactobacillus curieae 1 species 1138822 468 0 2767881 0 818 2 genus 1 species Lactobacillus sanfranciscensis 1625 0 419 53444 0 399 1 species Lactobacillus lindneri 3 genus 2767842 2686 0 species 1 Lactobacillus paraplantarum 341 0 60520 1590 1581 0 1 species Lactobacillus plantarum 1589 0 764 1 species Lactobacillus pentosus 6 genus 2767879 4120 0 0 768 1007676 species 1 Lactobacillus ginsenosidimutans 1602 0 536 1 species Lactobacillus alimentarius 839 0 1612 species 1 Lactobacillus farciminis 1 species Lactobacillus crustorum 392416 504 0 Lactobacillus allii 1 species 1847728 0 573 900 0 1074467 Lactobacillus heilongjiangensis species 1 343155 0 1385 1 order 265 Bacillales 919 Thermoactinomycetaceae 15 4 family 1 186824 0 1695 292635 106 0 1 genus Laceyella Novibacillus 66 genus 2 1 1574 0 1677050 1471761 0 1508 Novibacillus thermophilus 1 species 567 Bacillaceae family 117 1 0 143911 186817 10 Fictibacillus 3 genus 1 1329200 2594 0 Fictibacillus arsenicus 1 species 255247 0 1017 1 species Fictibacillus phosphorivorans 1221500 1567 0 2 genus Oceanobacillus 3 182709 0 1687 1 1 species Oceanobacillus iheyensis 182710 1684 0 2675229 0 2688 2 genus 264697 903 0 1 species Bacillus muralis species 1 Bacillus simplex 1785 0 1478 106 Lysinibacillus 5 genus 1 400634 0 5901 1 species Lysinibacillus varians 1145276 1180 0 1 no rank 2636778 0 921 Lysinibacillus sp. YS11 species 1 921 0 2072025 1098 0 28031 Lysinibacillus fusiformis species 1 Lysinibacillus sphaericus species 1 0 2596 1421 459532 1353 0 1 genus Terribacillus aidingensis 1 species 586416 1353 0 genus 1 1352 0 351195 1230341 1352 0 Salimicrobium jeotgali 1 species 1 5893 0 84406 20 Virgibacillus genus 7 872 0 1473 Virgibacillus pantothenticus species 1 2 no rank 2620237 1951 0 0 861 403957 Virgibacillus sp. SK37 species 1 species 1 Virgibacillus sp. 6R 0 1090 1911587 954 0 163877 species 1 Virgibacillus necropolis species 1 Virgibacillus halodenitrificans 940 0 1482 0 1156 2017483 Virgibacillus phasianinus species 1 129337 12673 0 1 15 genus 854 Geobacillus species 1 Geobacillus subterraneus 0 988 129338 1 species Geobacillus thermodenitrificans 33940 0 1238 Geobacillus genomosp. 3 species 1 971 0 1921421 species 1 Geobacillus stearothermophilus 1534 0 1422 3783 0 1505648 species group 4 species 1 Geobacillus thermocatenulatus 766 0 33938 1462 0 419 Geobacillus kaustophilus 1 species species 1 Geobacillus thermoleovorans 1560 0 33941 1 species Geobacillus lituanicus 169283 0 1038 0 3305 2642459 no rank 6 Geobacillus sp. Y412MC61 1 species 544556 0 436 691437 0 524 Geobacillus sp. C56-T3 1 species 1 species Geobacillus sp. Y412MC52 550542 418 0 0 967 581103 Geobacillus sp. Y4.1MC1 species 1 Geobacillus sp. GHH01 1 species 1233873 0 340 0 620 471223 species 1 Geobacillus sp. WCH70 0 5692 2675234 genus 5 86665 963 0 Bacillus halodurans 1 species species 1 Bacillus clausii 1721 0 79880 300825 0 1253 Bacillus lehensis 1 species 79885 948 0 1 species Bacillus pseudofirmus 807 0 199441 species 1 Bacillus krulwichiae 2675230 0 2425 2 genus Bacillus oceanisediminis species 1 1548 0 665099 877 0 859143 Bacillus kochii species 1 1 1906945 0 1117 Parageobacillus 2 2 genus 1426 1115 0 1 species Parageobacillus thermoglucosidasius 1030 0 1055323 genus 1 species 1 Aeribacillus pallidus 0 1030 33936 genus 1 945 0 175304 945 0 1472767 Lentibacillus amyloliquefaciens species 1 3 genus Halobacillus 2 45667 0 2019 1 species 1 Halobacillus halophilus 0 959 1570 1 species Halobacillus mangrovi 402384 1058 0 1 90112 0 1386 4935 Bacillus genus 58 1985 0 561879 Bacillus safensis species 1 1 species Bacillus infantis 324767 2289 0 86661 24437 0 10 species group species 1 Bacillus toyonensis 0 781 155322 658666 0 550 1 species Bacillus bombysepticus 580165 1038 0 1 species Bacillus cytotoxicus 1405 3317 0 1 species Bacillus mycoides 6862 0 1428 Bacillus thuringiensis species 1 3 no rank 2750818 0 3085 2053832 0 1055 1 species Bacillus sp. HBCD-sjtu 1063 0 1892404 Bacillus sp. ABP14 species 1 species 1 Bacillus sp. FDAARGOS_235 967 0 1839798 1396 7866 0 Bacillus cereus 1 species 0 938 1392 species 1 Bacillus anthracis species 1 Bacillus cellulosilyticus 0 970 1413 Bacillus gibsonii 1 species 79881 367 0 species 1 Bacillus weihaiensis 0 993 1547283 species 1 Bacillus smithii 0 754 1479 135735 1136 0 Bacillus endophyticus 1 species 0 698 1178537 species 1 Bacillus xiamenensis 1408 3784 0 1 species Bacillus pumilus Bacillus horikoshii 1 species 79883 1844 0 1792192 1024 0 1 species group 0 1024 293387 Bacillus altitudinis species 1 185979 13466 0 19 no rank Bacillus sp. FJAT-14266 species 1 0 897 1837130 1446792 0 563 Bacillus sp. Pc3 1 species Bacillus sp. 1s-1 1 species 2026248 0 1106 1409 0 313 Bacillus sp. (in: Bacteria) 1 species Bacillus sp. Lzh-5 1 species 2049935 0 185 0 285 1574141 Bacillus sp. YP1 species 1 950 0 1565991 Bacillus sp. X1(2014) species 1 2009331 419 0 Bacillus sp. MD-5 1 species Bacillus sp. JS species 1 0 406 1127744 1 species Bacillus sp. LM 4-2 1628753 293 0 1827146 1009 0 Bacillus sp. IHB B 7164 1 species Bacillus sp. OxB-1 1 species 98228 0 1250 951 0 756828 Bacillus sp. WP8 species 1 species 1 Bacillus sp. SJ-10 841 0 563169 1570330 199 0 Bacillus sp. BH072 1 species 0 1107 1856406 Bacillus sp. H15-1 species 1 1299 0 666686 species 1 Bacillus sp. 1NLA3E species 1 Bacillus sp. SDLI1 0 825 1774743 568 0 1941347 Bacillus sp. 275 species 1 1404 0 2497 Bacillus megaterium 1 species 1065 0 632773 Bacillus beveridgei species 1 1398 0 3026 1 species Bacillus coagulans species 1 Bacillus methanolicus 973 0 1471 Bacillus flexus 1 species 86664 1072 0 species 1 Bacillus glycinifermentans 2051 0 1664069 species 1 Bacillus aryabhattai 842 0 412384 species group 9 0 18917 653685 species 1 Bacillus subtilis 6728 0 1423 Bacillus paralicheniformis species 1 1832 0 1648923 Bacillus licheniformis 1 species 1402 1568 0 72361 232 0 1 species Bacillus vallismortis 0 1310 1452 species 1 Bacillus atrophaeus species subgroup 3 0 5961 1938374 0 2827 1390 Bacillus amyloliquefaciens species 1 492670 2314 0 1 species Bacillus velezensis 659243 820 0 Bacillus siamensis 1 species 1286 0 119858 species 1 Bacillus sonorensis 33932 0 987 Bacillus cohnii 1 species 1 29331 1269 0 2 Amphibacillus 2 genus 1449 0 1267 Amphibacillus xylanus 1 species 1 0 4594 150247 Anoxybacillus 34 genus 6 1 species Anoxybacillus flavithermus 33934 0 1321 198467 762 0 Anoxybacillus gonensis 1 species no rank 2 0 1801 2639704 Anoxybacillus sp. B7M1 species 1 0 782 1490057 1490052 1019 0 1 species Anoxybacillus sp. B2M1 species 1 Anoxybacillus amylolyticus 0 676 294699 Alicyclobacillaceae 65 9 family 1 186823 0 11000 3 genus 45 Tumebacillus 432330 0 5010 1 1214604 0 1673 1 species Tumebacillus algifaecis Tumebacillus avium species 1 3292 0 1903704 genus 2 30 Alicyclobacillus 0 3374 29330 1 405212 3344 0 1 species Alicyclobacillus acidocaldarius 1 1129704 2551 0 142 Kyrpidia 3 genus 2055160 1122 0 1 species Kyrpidia sp. EA-1 0 1287 33943 species 1 Kyrpidia tusciae 9 no rank 539002 0 5915 2 no rank 539738 0 1497 genus 2 Gemella 2 0 1497 1378 1 1495 0 2624949 no rank 1 1785995 0 1495 1 species Gemella sp. oral taxon 928 4418 0 539742 no rank 7 4418 0 33986 1 genus 7 Exiguobacterium 239 1 species Exiguobacterium antarcticum 132920 612 0 2644629 2887 0 4 no rank 360911 0 693 Exiguobacterium sp. AT1b 1 species species 1 Exiguobacterium sp. MH3 580 0 1399115 Exiguobacterium sp. U13-1 1 species 1849031 0 841 1224749 0 773 Exiguobacterium sp. ZWU0009 1 species 332410 0 680 1 species Exiguobacterium sibiricum 186822 113948 0 1 46 family Paenibacillaceae 343 2 genus 11 Thermobacillus 76632 5195 0 1 377615 5184 0 Thermobacillus composti 1 species Brevibacillus 45 genus 4 1 4666 0 55080 54913 1234 0 1 species Brevibacillus formosus Brevibacillus laterosporus species 1 1394 0 1465 1 species Brevibacillus brevis 1393 1993 0 101071 0 44249 1 genus 36 Paenibacillus 802 species 1 Paenibacillus odorifer 1903 0 189426 0 1603 59893 species 1 Paenibacillus peoriae 3861 0 2044880 species group 1 species 1 Paenibacillus riograndensis 0 3861 483937 169760 0 3913 1 species Paenibacillus stellifer species 1 Paenibacillus crassostreae 881 0 1763538 1 species Paenibacillus durus 44251 0 5757 Paenibacillus sabinae 1 species 365617 2791 0 species 1 Paenibacillus naphthalenovorans 0 1747 162209 1 species Paenibacillus bovis 1616788 2307 0 0 4308 160799 Paenibacillus borealis species 1 Paenibacillus mucilaginosus 1 species 61624 0 6050 0 4012 189425 Paenibacillus graminis species 1 1 species Paenibacillus kribbensis 172713 1649 0 1462996 0 2619 1 species Paenibacillus yonginensis 528191 1630 0 1 species Paenibacillus xylanexedens no rank 13 0 35152 185978 1536775 0 1297 Paenibacillus sp. FSL H7-0737 1 species Paenibacillus sp. Y412MC10 species 1 2428 0 481743 1536771 4303 0 Paenibacillus sp. FSL R5-0912 1 species 1272 0 1536770 Paenibacillus sp. FSL R5-0345 species 1 1566358 0 1353 Paenibacillus sp. IHBB 10380 1 species 3012 0 324057 species 1 Paenibacillus sp. JDR-2 0 3896 1536772 species 1 Paenibacillus sp. FSL R7-0273 1870819 0 2162 1 species Paenibacillus sp. BIHB4019 3455 0 1536773 Paenibacillus sp. FSL R7-0331 species 1 Paenibacillus sp. 32O-W 1 species 1695218 3098 0 1536769 4512 0 Paenibacillus sp. FSL P4-0081 1 species Paenibacillus sp. FSL H7-0357 1 species 1536774 0 3044 2069255 0 1320 1 species Paenibacillus sp. lzh-N1 0 5538 1406 Paenibacillus polymyxa species 1 Paenibacillus beijingensis 1 species 1126833 2717 0 0 1654 1178515 species 1 Paenibacillus swuensis Paenibacillus terrae 1 species 159743 1792 0 species 1 Paenibacillus ihbetae 0 2771 1870820 species 1 Paenibacillus larvae 1706 0 1464 1 species Paenibacillus donghaensis 414771 3908 0 85151 0 2673 3 no rank 1 0 2673 55079 Aneurinibacillus 10 genus 3 2642329 1072 0 1 no rank Aneurinibacillus sp. XH2 1 species 1450761 1072 0 1591 0 1500254 species 1 Aneurinibacillus soli 1 0 21647 186818 120 Planococcaceae family 26 0 5565 1569 1 genus 5 30 Sporosarcina 2310 0 2647733 no rank 2 1930546 0 1055 1 species Sporosarcina sp. P37 Sporosarcina sp. P33 1 species 1930764 1255 0 Sporosarcina psychrophila 1 species 1476 776 0 2449 0 1571 species 1 Sporosarcina ureae 1 1614 0 157226 Jeotgalibacillus 15 genus 2 species 1 Jeotgalibacillus malaysiensis 1599 0 1508404 genus 1 0 842 1649 no rank 1 0 842 2644826 0 842 1750719 Kurthia sp. 11kri321 species 1 genus 3 15 Solibacillus 2489 0 648800 1 species 1 Solibacillus silvestris 1465 0 76853 1009 0 2637870 no rank 1 Solibacillus sp. R5-41 species 1 0 1009 2048654 1 Rummeliibacillus 2 genus 1 648802 894 0 241244 893 0 Rummeliibacillus stabekisii 1 species Planococcus 103 genus 12 1 10123 0 1372 161360 732 0 Planococcus antarcticus 1 species Planococcus kocurii species 1 0 456 1374 559 0 414778 species 1 Planococcus donghaensis 0 961 1038856 Planococcus plakortidis species 1 607 0 1215089 Planococcus halocryophilus species 1 0 2587 192421 species 1 Planococcus maritimus species 1 Planococcus faecalis 697 0 1598147 no rank 2 0 1678 2662419 0 543 1526927 species 1 Planococcus sp. PAMC 21323 Planococcus sp. MB-3u-03 1 species 2058136 0 1135 Planococcus rifietoensis species 1 0 1130 200991 1302659 613 0 1 species Planococcus sp. L10.15 1 1438 0 186821 1 Sporolactobacillaceae family 2 no rank 1 0 1437 663587 species 1 [Bacillus] selenitireducens 1437 0 85683 1 90964 35954 0 Staphylococcaceae 2665 42 family 1 45669 1259 0 41 Salinicoccus 2 genus 1 species Salinicoccus halodurans 407035 0 1218 1279 28873 0 1 33 genus 1018 Staphylococcus Staphylococcus epidermidis species 1 0 1067 1282 0 813 308354 Staphylococcus simiae species 1 662 0 1284 species 1 Staphylococcus hyicus 690 0 985002 species 1 Staphylococcus argenteus species 1 Staphylococcus lugdunensis 0 641 28035 0 570 1292 Staphylococcus warneri species 1 no rank 1 0 611 91994 0 611 1715860 Staphylococcus sp. AntiMn-1 species 1 1 species Staphylococcus nepalensis 214473 554 0 533 0 29385 species 1 Staphylococcus saprophyticus Staphylococcus aureus species 1 4036 0 1280 species 1 Staphylococcus agnetis 573 0 985762 species 1 Staphylococcus pseudintermedius 1847 0 283734 Staphylococcus sciuri species 1 0 683 1296 Staphylococcus haemolyticus 1 species 1283 630 0 0 550 643214 species 1 Staphylococcus stepanovicii 1294 571 0 1 species Staphylococcus muscae species 1 Staphylococcus piscifermentans 697 0 70258 Staphylococcus pasteuri species 1 0 1372 45972 70255 0 641 1 species Staphylococcus condimenti 1 species Staphylococcus pettenkoferi 170573 0 631 1281 731 0 1 species Staphylococcus carnosus 1 species Staphylococcus lutrae 155085 0 456 1290 0 834 1 species Staphylococcus hominis species 1 Staphylococcus schleiferi 0 924 1295 Staphylococcus xylosus species 1 1055 0 1288 29388 0 946 Staphylococcus capitis 1 species 781 0 46127 species 1 Staphylococcus felis 61015 0 499 1 species Staphylococcus succinus 29382 0 689 1 species Staphylococcus cohnii species 1 Staphylococcus simulans 962 0 1286 Staphylococcus equorum 1 species 246432 0 928 0 678 29384 species 1 Staphylococcus kloosii 2 genus Auricoccucs 40 2005363 441 0 1 401 0 1849491 species 1 Auricoccus indicus genus 4 Macrococcus 11 0 2716 69965 1 1 species Macrococcus caseolyticus 69966 0 1368 1 no rank 2619255 828 0 species 1 Macrococcus sp. IME1552 0 828 1898474 1 species Macrococcus canis 1855823 0 509 Listeriaceae 13 family 9 1 6728 0 186820 genus 6 93 Listeria 5932 0 1637 1 1643 764 0 Listeria welshimeri 1 species species 1 Listeria ivanovii 0 1231 1638 species 1 Listeria innocua 0 608 1642 1639 2543 0 Listeria monocytogenes 1 species species 1 Listeria seeligeri 693 0 1640 2755 0 783 1 2 genus Brochothrix 13 Brochothrix thermosphacta 1 species 2756 770 0 1 no rank 84086 1260 0 243899 1260 0 1 species endosymbiont 'TC1' of Trimyema compressum 31 class Negativicutes 145 909932 101323 0 1 51 Acidaminococcales 5 order 1 1843488 0 20406 family 4 91 Acidaminococcaceae 0 20355 909930 1 Acidaminococcus 109 3 genus 1 904 0 20264 Acidaminococcus intestini species 1 0 12889 187327 1 species Acidaminococcus fermentans 905 0 7266 42700 0 1843489 1 order 11 1167 Veillonellales 10 family Veillonellaceae 1113 31977 0 41533 1 65 Dialister 2 genus 1 39948 13186 0 0 13121 39950 species 1 Dialister pneumosintes 1 29465 7626 0 Veillonella 41 3 genus 29466 4789 0 Veillonella parvula 1 species 248315 0 2796 Veillonella rodentium 1 species 1 0 4303 909928 Negativicoccus 11 genus 2 4292 0 1702287 species 1 Negativicoccus massiliensis 906 15305 0 1 2 genus 1063 Megasphaera Megasphaera elsdenii 1 species 907 0 14242 1 38072 0 909929 132 Selenomonadales order 14 1 1843490 0 3018 Sporomusaceae 4 4 family 1 3014 0 365348 64 Pelosinus genus 3 2629460 1279 0 1 no rank species 1 Pelosinus sp. UFO1 1279 0 484770 0 1671 365349 Pelosinus fermentans species 1 family 9 251 Selenomonadaceae 34922 0 1843491 1 Selenomonas 276 genus 6 1 0 31311 970 69823 6702 0 Selenomonas sputigena 1 species Selenomonas ruminantium species 1 8459 0 971 3 no rank 2637378 0 15874 Selenomonas sp. oral taxon 920 species 1 4480 0 1884263 Selenomonas sp. oral taxon 136 species 1 6229 0 713030 0 5165 712538 species 1 Selenomonas sp. oral taxon 478 1 0 3360 158846 2 Megamonas genus 2 Megamonas hypermegale species 1 3358 0 158847 2 no rank 1859062 0 528 262406 528 0 1 2 genus 37 Thermobaculum 166501 0 491 1 species Thermobaculum terrenum phylum 5 2155 0 200938 14 Chrysiogenetes 5 class 1 118001 0 2155 Chrysiogenales 45 4 order 1 189769 2141 0 3 family Chrysiogenaceae 10 189770 0 2096 1 17 Desulfurispirillum 2 genus 1 393029 2086 0 Desulfurispirillum indicum species 1 0 2069 936456 0 1150 68297 phylum 5 class 5 Dictyoglomia 9 0 1150 203486 1 1 1141 0 203487 Dictyoglomales 1 order 4 1 Dictyoglomaceae 3 family 1 203488 0 1140 1139 0 13 genus 2 567 0 14 Dictyoglomus thermophilum species 1 572 0 513050 Dictyoglomus turgidum species 1 3 clade 2498710 255 0 67814 0 255 3 phylum 255 0 693071 class 3 3 order 693072 255 0 693073 255 0 1 3 family Caldisericaceae 5 9 Caldisericum genus 2 1 250 0 693074 Caldisericum exile species 1 241 0 693075 13 phylum 40117 0 6104 class 13 Nitrospira 30 0 6104 203693 1 order 12 57 Nitrospirales 0 6074 189778 1 30 Nitrospiraceae 11 family 1 189779 0 6017 554 0 28261 genus 1 28262 554 0 1 species Thermodesulfovibrio yellowstonii Nitrospira 41 5 genus 1 1234 3846 0 42253 1363 0 Nitrospira moscoviensis 1 species 330214 820 0 Nitrospira defluvii 1 species 0 822 1715989 Candidatus Nitrospira inopinata species 1 800 0 1325564 species 1 Nitrospira japonica genus 4 Leptospirillum 22 1587 0 179 1 0 609 261385 species group 1 0 609 1660083 species 1 Leptospirillum sp. Group II 'CF-1' 607 0 261386 species group 1 0 607 178606 Leptospirillum ferriphilum species 1 0 349 655606 species group 1 species 1 Leptospirillum ferrooxidans 349 0 180 11 phylum 508458 0 8473 1 8473 0 649775 Synergistia 40 class 11 1 0 8433 649776 45 Synergistales order 10 649777 0 8388 1 9 family Synergistaceae 122 5541 0 508459 1 genus 2 10 Cloacibacillus Cloacibacillus porcorum 1 species 1197717 5531 0 1 genus 336260 499 0 336261 0 499 Thermovirga lienii 1 species 2 genus 10 Thermanaerovibrio 81461 1168 0 1 1158 0 81462 Thermanaerovibrio acidaminovorans species 1 81466 683 0 1 genus Aminobacterium colombiense species 1 683 0 81468 genus 2 1 Acetomicrobium 0 375 49894 1 97477 0 374 1 species Acetomicrobium mobile 3 no rank 2323 0 731 clade 3 0 731 1783234 1 phylum 95818 0 211 1895827 211 0 1 no rank Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 1 211 0 2056494 clade 2 0 520 95901 class 2 520 0 2497643 2 order 2497644 0 520 2497645 520 0 2 family 1 0 520 1551504 184 Candidatus Babela genus 2 Candidatus Babela massiliensis 1 species 673862 336 0 1384 0 1930617 phylum 4 class 4 8 Calditrichae 0 1384 1962850 1 1962852 0 1376 1 3 order 1 Calditrichales 1962854 1375 0 2 family Caldithrix 1 genus 2 1 0 1375 187144 species 1 Caldithrix abyssi 1374 0 187145 2964 0 200930 phylum 9 Deferribacteres 6 class 9 1 2964 0 68337 191393 2958 0 1 8 order 36 Deferribacterales family 7 20 Deferribacteraceae 2922 0 191394 1 1 839 0 53572 1 Deferribacter genus 2 0 838 197162 Deferribacter desulfuricans species 1 0 697 117999 genus 1 species 1 Denitrovibrio acetiphilus 697 0 118000 0 547 2351 1 genus 2 Flexistipes 1 546 0 2352 species 1 Flexistipes sinusarabici 545865 819 0 1 genus 477976 819 0 1 species Calditerrivibrio nitroreducens 0 1295 200940 phylum 7 1295 0 67799 class 7 order 7 5 Thermodesulfobacteriales 0 1295 188710 1 Thermodesulfobacteriaceae 5 6 family 1 188711 1290 0 444090 0 321 1 genus species 1 Caldimicrobium thiodismutans 321 0 1653476 1 1740 0 691 3 Thermodesulfobacterium 3 genus 0 155 1741 Thermodesulfobacterium commune species 1 Thermodesulfobacterium geofontis species 1 533 0 1295609 genus 1 273 0 241192 171695 273 0 1 species Thermodesulfatator indicus Elusimicrobia 4 10 phylum 1 74152 1825 0 no rank 1 361 0 99260 1 species uncultured Termite group 1 bacterium 167965 361 0 342 0 641853 class 3 641854 342 0 1 3 order Elusimicrobiales 1 341 0 641876 1 family 2 Elusimicrobiaceae 1 genus 1 340 0 423604 species 1 Elusimicrobium minutum 340 0 423605 1118 0 447830 class 5 1 1783344 1118 0 Endomicrobiales 16 5 order 1 0 1102 1783343 Endomicrobiaceae 13 family 4 0 1089 1408194 1 genus 3 Endomicrobium 2 1408204 0 374 Candidatus Endomicrobium trichonymphae 1 species 713 0 1408281 species 1 Endomicrobium proavitum 200783 0 5722 25 phylum 187857 5722 0 1 25 class 10 Aquificae 0 933 1485951 1 order 5 Desulfurobacteriales 32 558314 0 901 1 4 family Desulfurobacteriaceae 5 171868 0 442 1 genus 1 species Thermovibrio ammonificans 228745 442 0 1 454 0 64159 Desulfurobacterium 2 genus 2 64160 0 452 Desulfurobacterium thermolithotrophum 1 species 1 0 4779 32069 Aquificales 43 order 19 no rank 1 0 299 90150 0 299 412592 genus 1 Thermosulfidibacter takaii 1 species 412593 0 299 10 Hydrogenothermaceae family 6 1 1730 0 224027 genus 2 Persephonella 1 394 0 182899 1 0 393 309805 species 1 Persephonella marina 1 0 1326 212790 1 Sulfurihydrogenibium genus 3 species 1 Sulfurihydrogenibium azorense 0 378 309806 1 no rank 2619248 0 947 947 0 436114 Sulfurihydrogenibium sp. YO3AOP1 species 1 Aquificaceae 52 11 family 1 64898 0 2707 1 genus 939 338 0 940 0 338 Hydrogenobacter thermophilus 1 species 2 genus 75905 0 338 75906 0 122 1 species Thermocrinis ruber Thermocrinis albus species 1 0 216 136094 2713 0 185 1 genus 63363 185 0 1 species Aquifex aeolicus Hydrogenobaculum 36 6 genus 1 168657 0 1794 5 no rank 2622382 1758 0 0 377 547144 species 1 Hydrogenobaculum sp. HO 0 377 547146 species 1 Hydrogenobaculum sp. SN 380749 0 250 Hydrogenobaculum sp. Y04AAS1 1 species 0 377 547143 Hydrogenobaculum sp. 3684 species 1 Hydrogenobaculum sp. SHO 1 species 547145 377 0 clade 369 17193289 0 1783270 355 clade 68336 0 17183266 22 phylum 1090 0 18413 191410 18413 0 1 22 class 69 Chlorobia 1 18344 0 191411 Chlorobiales 270 order 21 68 Chlorobiaceae 20 family 1 191412 0 18074 1101 3845 0 1 5 genus 13 Prosthecochloris 0 2976 2632826 no rank 3 1495 0 281093 species 1 Prosthecochloris sp. GSB1 1 species Prosthecochloris sp. HL-130-GSB 1974213 0 742 species 1 Prosthecochloris sp. CIB 2401 739 0 1868325 1102 856 0 1 species Prosthecochloris aestuarii 274493 0 6622 8 no rank 3 genus 18 Pelodictyon 1099 0 2679 1 0 1156 34090 species 1 Pelodictyon phaeoclathratiforme 0 1505 1100 species 1 Pelodictyon luteolum 1 1091 0 3943 3 Chlorobium 5 genus 0 493 337090 species 1 Chlorobium chlorochromatii 1096 1450 0 1 species Chlorobium phaeobacteroides 1 species Chlorobium limicola 1092 0 1021 1094 0 976 Chlorobium phaeovibrioides 1 species 100715 925 0 1 2 genus 13 Chloroherpeton Chloroherpeton thalassium species 1 0 912 100716 Chlorobaculum 54 genus 4 1 0 6614 256319 274537 0 2724 Chlorobaculum limnaeum 1 species Chlorobaculum parvum 1 species 274539 2064 0 1772 0 1097 Chlorobaculum tepidum species 1 1134404 0 2214 7 phylum 2214 0 795747 1 class 7 Ignavibacteria 10 6 order Ignavibacteriales 1 795748 0 2204 1 1132 0 1334117 1 family 3 2 Melioribacteraceae genus 2 Melioribacter 3 0 1130 1134403 1 1134405 0 1127 Melioribacter roseus 1 species family 2 Ignavibacteriaceae 1 1071 0 795749 1 genus 1 0 1070 795750 1070 0 591197 Ignavibacterium album species 1 1 0 17162639 976 Bacteroidetes 69 phylum 326 1 88127 0 768503 Cytophagia 167 class 56 768507 87960 0 1 55 order 334 Cytophagales family 4 5 Flammeovirgaceae 0 4722 200667 1 0 3232 340671 no rank 1 0 3232 1257021 species 1 Flammeovirgaceae bacterium 311 59739 1485 0 1 2 genus Flammeovirga 3 2637820 0 1482 1 no rank 0 1482 1191459 species 1 Flammeovirga sp. MY04 9 family Cyclobacteriaceae 4 563798 0 6335 1 Algoriphagus 6 genus 2 1 1018 0 246875 1 species Algoriphagus sp. M8-2 1727163 1012 0 232244 850 0 1 genus species 1 Belliella baltica 0 850 232259 1 1947 0 390846 Echinicola 3 genus 2 1 species Echinicola vietnamensis 390884 1944 0 23 Cyclobacterium 3 genus 1 68288 0 2516 104 1116 0 Cyclobacterium marinum 1 species Cyclobacterium amurskyense 1 species 320787 1377 0 family 3 659 0 1501348 1 339 0 281119 Candidatus Amoebophilus 3 genus 2 0 336 281120 species 1 Candidatus Amoebophilus asiaticus 273135 320 0 1 genus 1 no rank 2641185 0 320 species 1 Cardinium endosymbiont of Encarsia pergandiella 320 0 249402 1 1937968 1147 0 8 Bernardetiaceae 2 family 1 genus 1937972 1139 0 Bernardetia litoralis 1 species 999 1139 0 1 0 23803 89373 137 Cytophagaceae family 16 1 107 11409 0 50 Spirosoma 6 genus species 1 Spirosoma aerolatum 0 2103 1211326 Spirosoma radiotolerans species 1 0 2022 1379870 2452 0 1178516 species 1 Spirosoma montaniterrae 564064 0 2506 Spirosoma rigui 1 species Spirosoma sp. HA7 species 1 0 2276 2057025 1 0 3018 105 Runella 3 genus 2 106 3015 0 Runella slithyformis 1 species 861914 0 2220 1 genus 2220 0 2620963 no rank 1 0 2220 1834519 Fibrella sp. ES10-3-2-2 species 1 2 genus 7 Leadbetterella 319458 0 1716 1 1 species Leadbetterella byssophila 316068 0 1709 1 0 1476 978 Cytophaga 6 genus 2 Cytophaga hutchinsonii 1 species 985 0 1470 1 120831 3827 0 Dyadobacter 2 2 genus Dyadobacter fermentans 1 species 94254 3825 0 2364 0 1853234 family 2 1 59740 0 2364 5 Persicobacter 2 genus 2664020 2359 0 1 no rank 2359 0 1085624 species 1 Persicobacter sp. JZB09 family 2 0 926 2762301 869806 0 926 1 2 genus 18 Marivirga 1006 0 908 1 species Marivirga tractuosa 1 1853232 0 47670 Hymenobacteraceae 83 16 family 1 89966 0 34909 227 Hymenobacter 8 genus 5 no rank 2615202 24570 0 1484116 0 5362 Hymenobacter sp. PAMC 26554 1 species 0 3397 1385663 species 1 Hymenobacter sp. DG25A 1 species Hymenobacter sp. APR13 1356852 5908 0 1484118 5878 0 Hymenobacter sp. PAMC 26628 1 species 0 4025 1385664 species 1 Hymenobacter sp. DG25B 1411621 5846 0 1 species Hymenobacter sedentarius 1 species Hymenobacter swuensis 1446467 0 4266 1379908 6950 0 1 4 genus Rufibacter 21 2 no rank 2639626 4451 0 species 1 Rufibacter sp. DG15C 0 2289 1379909 1379910 0 2162 Rufibacter sp. DG31D 1 species 0 2478 512763 Rufibacter tibetensis species 1 323449 0 5728 1 3 genus Pontibacter 18 Pontibacter korlensis 1 species 400092 2739 0 1 species Pontibacter akesuensis 388950 0 2971 1 1853228 18868 0 21 Chitinophagia 16 class 30 Chitinophagales 15 order 1 1853229 18847 0 1 563835 18817 0 Chitinophagaceae 51 14 family 379899 3583 0 2 genus Niabella ginsenosidivorans species 1 0 1763 1176587 1820 0 446683 species 1 Niabella soli Chitinophaga 5 genus 3 1 5757 0 79328 Chitinophaga pinensis species 1 0 3894 79329 Chitinophagaceae bacterium 13 1 species 2029983 0 1858 genus 2 1 Flavisolibacter 0 1300 398041 1 0 1299 1492898 Flavisolibacter tropicus species 1 Niastella 1 genus 2 1 3009 0 354354 3008 0 354356 Niastella koreensis species 1 3 Arachidicoccus 2 genus 1 1769012 1638 0 no rank 1 1635 0 2636138 1 species Arachidicoccus sp. BS20 1850526 1635 0 1 649460 3479 0 Filimonas 4 2 genus 3475 0 477680 species 1 Filimonas lacunae class 6 Saprospiria 38 0 4889 1937959 1 4851 0 1936988 1 order 5 Saprospirales 3 family 1 0 911 89374 1007 0 911 1 genus 1008 911 0 1 species Saprospira grandis 3937 0 1937961 1 family 3 Haliscomenobacteraceae 12 Haliscomenobacter 5 2 genus 1 2349 3925 0 1 species Haliscomenobacter hydrossis 2350 0 3920 1 0 10942 1100069 152 Bacteroidetes Order II. Incertae sedis order 7 Rhodothermaceae 72 family 6 1 10790 0 563843 1 29548 4721 0 62 Rhodothermus 2 genus 29549 4659 0 Rhodothermus marinus 1 species no rank 1 4030 0 1196022 0 4030 1779382 Rhodothermaceae bacterium RA species 1 genus 2 1 Salinibacter 1967 0 146918 1 1966 0 146919 Salinibacter ruber species 1 117743 0 185915 1 145 class Flavobacteriia 75 144 order Flavobacteriales 116 200644 0 185840 1 2762318 81262 0 21 family 64 Elizabethkingia genus 6 1 12336 0 308865 species 1 Elizabethkingia meningoseptica 2125 0 238 1117645 4402 0 Elizabethkingia anophelis 1 species species 1 Elizabethkingia genomosp. 4 1183 0 1756150 Elizabethkingia miricola 1 species 172045 0 2804 Elizabethkingia genomosp. 3 1 species 1756149 0 1758 no rank 10 15816 0 2782232 0 1599 2782228 genus 1 1599 0 536441 Chryseobacterium taklimakanense species 1 0 14217 59732 1 genus 9 56 Chryseobacterium 558152 1169 0 Chryseobacterium piperi 1 species 2593645 0 5480 3 no rank 0 2536 2015076 Chryseobacterium sp. T16E-39 species 1 1839 0 1721091 species 1 Chryseobacterium sp. IHB B 17019 878220 0 1105 1 species Chryseobacterium sp. StRB126 species 1 Chryseobacterium indologenes 2754 0 253 1 species Chryseobacterium glaciei 1685010 1296 0 species 1 Chryseobacterium camelliae 0 2312 1265445 Chryseobacterium gallinarum species 1 1150 0 1324352 1013 0 714 1 genus 1014 0 714 Weeksella virosa 1 species Riemerella 73 genus 2 1 0 2422 34084 0 2349 34085 Riemerella anatipestifer species 1 2 genus 232 Ornithobacterium 28250 49974 0 1 1 species Ornithobacterium rhinotracheale 28251 49742 0 family 100 2913 Flavobacteriaceae 0 99393 49546 1 1 genus 1649495 772 0 no rank 1 0 772 2622645 1 species Seonamhaeicola sp. S2-3 1936081 0 772 1 genus 178469 1471 0 616991 0 1471 Arenibacter algicola 1 species 4823 0 292691 1 genus 5 13 Gramella 2126553 0 1649 Gramella sp. SH35 1 species 1913577 701 0 Gramella sp. LPB0144 1 species Gramella flava 1 species 1486245 1354 0 1106 0 411153 species 1 Gramella forsetii 0 1185 1209327 genus 1 0 1185 1803846 species 1 Flavivirga eckloniae genus 3 2 Muricauda 0 3113 111500 1 Muricauda ruestringensis 1 species 111501 0 1654 species 1 Muricauda lutaonensis 0 1457 516051 2933 0 252356 1 genus 5 Maribacter 4 no rank 3 0 2032 2615042 1 species Maribacter sp. 1_2014MBL_MicDiv 1644130 0 889 552 0 1836467 Maribacter sp. T28 species 1 Maribacter sp. HTCC2170 species 1 591 0 313603 1178778 897 0 Maribacter cobaltidurans 1 species genus 1 752 0 1176327 2636237 0 752 1 no rank 752 0 2094025 species 1 Aureitalea sp. RR4-38 1 28224 0 1016 78 Capnocytophaga genus 15 1017 0 1482 Capnocytophaga gingivalis 1 species 1018 0 1857 Capnocytophaga ochracea 1 species 1 species Capnocytophaga sputigena 1019 0 2583 no rank 6 0 11934 2640652 1 species Capnocytophaga sp. H4358 1945658 668 0 Capnocytophaga sp. ChDC OS43 1 species 209053 1687 0 2157 0 1316593 Capnocytophaga sp. oral taxon 864 species 1 1972 0 1705617 species 1 Capnocytophaga sp. oral taxon 323 1 species Capnocytophaga sp. oral taxon 878 1316596 0 4492 1945657 0 958 1 species Capnocytophaga sp. H2931 species 1 Capnocytophaga leadbetteri 0 5223 327575 1 species Capnocytophaga haemolytica 45243 1303 0 1 species Capnocytophaga cynodegmi 28189 929 0 Capnocytophaga canimorsus species 1 0 1464 28188 0 1371 1848904 Capnocytophaga stomatis species 1 1 0 11791 237 21 Flavobacterium genus 9 0 3565 986 species 1 Flavobacterium johnsoniae species 1 Flavobacterium branchiophilum 609 0 55197 996 0 2302 Flavobacterium columnare 1 species species 1 Flavobacterium gilvum 1730 0 1492737 species 1 Flavobacterium crassostreae 0 870 1763534 615 0 96345 species 1 Flavobacterium psychrophilum 1306519 0 1335 Flavobacterium commune 1 species Flavobacterium indicum species 1 744 0 312277 1 112040 0 1270 1 Zobellia 2 genus 1269 0 63186 species 1 Zobellia galactanivorans 1 genus 143222 0 1455 1 no rank 2633436 1455 0 1729720 0 1455 1 species Salegentibacter sp. T436 0 2123 61432 no rank 2 Flavobacteriaceae bacterium 3519-10 species 1 0 1263 531844 1150389 860 0 Flavobacteriaceae bacterium UJ101 1 species 1204360 0 755 1 genus 0 755 762954 species 1 Siansivirga zeaxanthinifaciens 358023 665 0 1 genus 0 665 1622118 species 1 Lutibacter profundi 2700084 0 1280 1 genus 0 1280 1850246 species 1 Lutibacter sp. LPB0138 1 326319 1529 0 13 Dokdonia 4 genus 464 0 326320 species 1 Dokdonia donghaensis 1052 0 2615033 no rank 2 1 species Dokdonia sp. MED134 313590 0 452 983548 0 600 Dokdonia sp. 4H-3-7-5 1 species 1 417127 0 1429 7 Zunongwangia 2 genus species 1 Zunongwangia profunda 0 1422 398743 1 363408 0 2852 3 Nonlabens 5 genus 943 0 328515 Nonlabens dokdonensis species 1 no rank 2 0 1315 2615035 2058134 0 638 1 species Nonlabens sp. MB-3u-79 species 1 Nonlabens sp. MIC269 0 677 1476901 0 591 319236 species 1 Nonlabens sediminis 1 genus 389486 664 0 no rank 1 664 0 2648869 species 1 Sediminicola sp. YIK13 0 664 1453352 genus 2 3 Robiginitalea 1971 0 252306 1 0 1968 252307 Robiginitalea biformata species 1 1 5303 0 52959 Polaribacter 12 genus 6 0 1258 996801 Polaribacter reichenbachii species 1 2840 0 196858 no rank 3 1 species Polaribacter sp. BM10 1529069 0 906 978 0 313598 species 1 Polaribacter sp. MED152 0 956 2058137 species 1 Polaribacter sp. ALD11 species 1 Polaribacter vadi 0 1193 1774273 11 Cellulophaga 4 genus 1 104264 2854 0 1 species Cellulophaga baltica 76594 0 1175 979 0 754 1 species Cellulophaga lytica Cellulophaga algicola 1 species 59600 914 0 1 genus 336276 361 0 no rank 1 0 361 2615019 361 0 2058135 species 1 Olleya sp. Bg11-27 Lacinutrix 7 4 genus 1 291183 1740 0 1 species Lacinutrix venerupis 1486034 620 0 no rank 2 0 1113 2647285 983544 0 609 Lacinutrix sp. 5H-3-7-4 1 species species 1 Lacinutrix sp. Bg11-31 504 0 2057808 1 genus 216431 0 674 674 0 313588 species 1 Croceibacter atlanticus 261827 937 0 1 genus Algibacter alginicilyticus species 1 937 0 1736674 489 0 83612 genus 1 57029 0 489 1 species Psychroflexus torquis 1 225842 1163 0 4 Formosa 3 genus 0 1159 2644710 no rank 2 1336795 0 490 1 species Formosa sp. Hel3_A1_48 1336794 0 669 1 species Formosa sp. Hel1_33_131 Myroides 102 genus 5 1 4194 0 76831 480520 793 0 Myroides profundi 1 species Myroides odoratimimus 1 species 76832 1247 0 2 no rank 2642485 2052 0 Myroides sp. ZB35 1 species 1458492 973 0 1079 0 1583100 Myroides sp. A21 species 1 1 genus 153265 845 0 101385 845 0 1 species Aequorivita sublithincola 4 Tenacibaculum 5 genus 1 104267 0 3189 0 977 1850252 species 1 Tenacibaculum todarodis Tenacibaculum jejuense 1 species 584609 0 731 Tenacibaculum dicentrarchi species 1 626 0 669041 species 1 Tenacibaculum maritimum 0 851 107401 1051 0 1518147 genus 1 1 species Wenyingzhuangia fucanilytica 1790137 1051 0 0 1557 286104 genus 2 no rank 2 1557 0 2615021 1936080 0 797 1 species Winogradskyella sp. J14-2 0 760 754409 Winogradskyella sp. PG-2 species 1 1 genus 393005 1066 0 Tamlana sp. UJ94 1 species 2069432 0 1066 0 1518 1333713 family 2 1 267986 0 1518 Owenweeksia 5 2 genus 1513 0 253245 Owenweeksia hongkongensis species 1 3 no rank 313602 353 0 1 Candidatus Walczuchella 2 genus 1 1940138 76 0 75 0 1415657 species 1 Candidatus Walczuchella monophlebidarum 336809 277 0 1 genus 1 species Candidatus Sulcia muelleri 336810 0 277 family 10 1 Blattabacteriaceae 0 1275 39782 1 0 1274 34098 1 genus 9 31 Blattabacterium 164514 0 150 Blattabacterium punctulatus 1 species 6 no rank 2647581 991 0 39768 93 0 Blattabacterium sp. (Mastotermes darwiniensis) 1 species Blattabacterium sp. (Blaberus giganteus) 1 species 1186051 103 0 1316444 167 0 Blattabacterium sp. (Nauphoeta cinerea) 1 species species 1 Blattabacterium sp. (Periplaneta americana) 0 132 367488 624186 0 296 1 species Blattabacterium sp. (Blattella germanica) Blattabacterium sp. (Blatta orientalis) species 1 200 0 367806 Blattabacterium cuenoti 1 species 1653831 0 102 1 0 1589 1853230 2 Crocinitomicaceae family 3 genus 2 Fluviicola 54 1587 0 332102 1 191579 1533 0 1 species Fluviicola taffensis Cryomorphaceae 1 family 246874 15 0 1755828 0 319 1 3 family 1 Ichthyobacteriaceae 1755829 318 0 1 2 genus Ichthyobacterium 1 317 0 242600 Ichthyobacterium seriolicida species 1 1 16822063 0 200643 Bacteroidia 215 class 71 10 order 26 Marinilabiliales 1970189 10816 0 1 Marinilabiliaceae 7 3 family 1 558415 2079 0 2072 0 1193324 1 genus 2 Alkalitalea 4 Alkalitalea saponilacus species 1 2068 0 889453 1471398 5420 0 1 3 family Prolixibacteraceae 13 Draconibacterium 23 genus 2 1 5407 0 1471399 0 5384 1168034 Draconibacterium orientale species 1 1 1336 0 1970190 5 Salinivirgaceae family 2 1970191 0 1331 1 genus Salinivirga cyanobacteriivorans 1 species 1307839 1331 0 1955 0 1573805 family 1 1 genus 2060722 1955 0 0 1955 1717717 Marinifilaceae bacterium SPP2 species 1 16811032 0 171549 1 order 60 Bacteroidales 3255 Bacteroidaceae 147 11 family 1 815 0 6416256 816 0 6416109 1 10 genus Bacteroides 250994 1796613 498216 0 Bacteroides caecimuris 1 species 1 species Bacteroides thetaiotaomicron 818 0 611271 Bacteroides caccae species 1 692229 0 47678 285403 0 28119 Bacteroides zoogleoformans species 1 246787 0 933036 1 species Bacteroides cellulosilyticus 817 0 1257726 Bacteroides fragilis 1 species 0 365456 28113 Bacteroides heparinolyticus species 1 Bacteroides helcogenes species 1 0 458406 290053 28116 0 1063372 Bacteroides ovatus 1 species 185291 2981 0 1 no rank Bacteroidales bacterium CF species 1 2981 0 1400053 Paludibacteraceae 1 family 3 1 5892 0 2005523 1 5891 0 346096 19 Paludibacter genus 2 Paludibacter propionicigenes species 1 5872 0 185300 66 Porphyromonadaceae 4 family 1 171551 0 21466 3 genus Porphyromonas 26 836 21400 0 1 16888 0 837 species 1 Porphyromonas gingivalis 28123 0 4486 Porphyromonas asaccharolytica 1 species 1022240 0 171550 1 family 5 66 Rikenellaceae 1 1611681 0 4471 Mucinivorans 9 2 genus 4462 0 1433126 Mucinivorans hirudinis species 1 Alistipes 144 genus 2 1 1017703 0 239759 1 species Alistipes finegoldii 214856 1017559 0 no rank 5 0 6773502 333046 genus 3 0 6772119 909656 species 1 Bacteroides salanitronis 161120 0 376805 0 5446377 821 species 1 Bacteroides vulgatus Bacteroides dorei species 1 1164622 0 357276 1383 0 511434 1 genus 2 11 Candidatus Azobacteroides species 1 Candidatus Azobacteroides pseudotrichonymphae 1372 0 511435 1 2005525 1538285 0 283 Tannerellaceae 7 family 1 0 49887 195950 Tannerella 71 genus 3 17837 0 2620507 no rank 1 17837 0 712710 species 1 Tannerella sp. oral taxon HOT-286 1 species Tannerella forsythia 28112 31979 0 genus 3 505 Parabacteroides 1488115 0 375288 1 1 no rank 2649774 0 1107374 2025876 1107374 0 Parabacteroides sp. CT06 1 species Parabacteroides distasonis species 1 380236 0 823 7 Barnesiellaceae family 3 1 0 381213 2005519 381206 0 397864 1 genus 2 Barnesiella 218 397865 380988 0 Barnesiella viscericola 1 species 2005520 23295 0 6 family 307628 0 9540 1 2 genus 17 Petrimonas Petrimonas mucosa 1 species 1642646 0 9523 9070 0 294702 1 genus 2 Proteiniphilum 75 1642647 8995 0 Proteiniphilum saccharofermentans 1 species Fermentimonas 1 genus 2 1 0 4685 1784836 Fermentimonas caenicola 1 species 1562970 4684 0 3 family 13 Odoribacteraceae 1853231 0 111020 1 111007 0 283168 1 genus 2 Odoribacter 17 1 species Odoribacter splanchnicus 28118 0 110990 family 11 31 Prevotellaceae 0 511627 171552 1 10 genus Prevotella 550 838 511596 0 1 1177574 0 7395 1 species Prevotella jejuni species 1 Prevotella enoeca 6067 0 76123 1 species Prevotella intermedia 28131 0 439425 species 1 Prevotella denticola 11736 0 28129 Prevotella fusca species 1 0 8093 589436 1 no rank 2638335 2881 0 2881 0 652716 Prevotella sp. oral taxon 299 species 1 6790 0 28132 Prevotella melaninogenica species 1 839 0 12930 Prevotella ruminicola 1 species 1 species Prevotella dentalis 52227 0 15729 1 31766 0 117747 Sphingobacteriia 32 class 24 200666 0 31734 1 23 order 49 Sphingobacteriales 1 84566 0 31685 30 Sphingobacteriaceae 22 family 38 Pedobacter 6 genus 1 84567 10873 0 1 species Pedobacter cryoconitis 188932 2841 0 Pedobacter heparinus species 1 2072 0 984 Pedobacter steynii 1 species 430522 0 1852 no rank 1 0 2511 2628915 Pedobacter sp. PACM 27299 1 species 1727164 0 2511 Pedobacter ginsengisoli species 1 0 1559 363852 genus 6 35 Sphingobacterium 0 9252 28453 1 1868 0 1010 species 1 Sphingobacterium mizutaii 7349 0 2609468 no rank 4 1933220 0 2300 Sphingobacterium sp. B29 1 species 743722 1855 0 1 species Sphingobacterium sp. 21 Sphingobacterium sp. G1-14 species 1 0 2009 2003121 0 1185 1538644 species 1 Sphingobacterium sp. ML3W Solitalea 6 genus 2 1 2058 0 929509 2052 0 995 species 1 Solitalea canadensis 2 genus Pseudopedobacter 5 1649482 0 2045 1 species 1 Pseudopedobacter saltans 2040 0 151895 1 423349 5944 0 Mucilaginibacter 51 4 genus 1234841 1356 0 1 species Mucilaginibacter sp. BJC16-A31 1 species Mucilaginibacter gotjawali 1550579 2341 0 no rank 1 2196 0 2617802 species 1 Mucilaginibacter sp. PAMC 26640 0 2196 1300914 no rank 1 1483 0 84568 0 1483 1986952 species 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 429 0 456828 phylum 2 429 0 456826 1 genus 2 Candidatus Cloacimonas 1 Candidatus Cloacimonas acidaminovorans species 1 0 428 456827 phylum 8 0 6484 142182 6484 0 219685 1 class 8 19 Gemmatimonadetes 1 6465 0 219686 Gemmatimonadales 165 order 7 6 family 45 Gemmatimonadaceae 219687 0 6300 1 10 Gemmatimonas genus 3 1 2853 0 173479 173480 0 1607 Gemmatimonas aurantiaca 1 species Gemmatimonas phototrophica species 1 0 1236 1379270 2 genus 32 Gemmatirosa 1706036 3402 0 1 861299 3370 0 1 species Gemmatirosa kalamazoonesis 4 phylum 65842 0 3110 class 4 Fibrobacteria 10 3110 0 204430 1 order 3 Fibrobacterales 5 3100 0 218872 1 2 family 204431 3095 0 Fibrobacter 3 genus 2 1 0 3095 832 Fibrobacter succinogenes species 1 0 3092 833 phylum 42 14288 0 200918 42 class 5 Thermotogae 188708 14288 0 1 7 order 1643947 2052 0 1643949 0 2052 7 family 0 380 28236 1 genus 2 3 Petrotoga Petrotoga mobilis 1 species 69499 377 0 1 314 0 1511648 Defluviitoga 1 genus 2 species 1 Defluviitoga tunisiensis 313 0 1006576 1358 0 160798 1 genus 3 Marinitoga 20 species 1 Marinitoga piezophila 645 0 149715 2640159 693 0 1 no rank 1545835 693 0 1 species Marinitoga sp. 1137 1 1643946 1454 0 6 Kosmotogales 6 order 5 family Kosmotogaceae 10 1643948 1448 0 1 1 1184396 0 433 1 Mesotoga 2 genus 0 432 1184387 species 1 Mesotoga prima genus 2 0 1005 651456 species 1 Kosmotoga pacifica 590 0 1330330 1 species Kosmotoga olearia 651457 0 415 8 Thermotogales 28 order 1 2419 0 10777 family 10 Fervidobacteriaceae 30 4233 0 1643950 1 Thermosipho 2 5 genus 1 2420 2468 0 1 species Thermosipho melanesiensis 46541 636 0 2421 0 713 Thermosipho africanus 1 species 2676525 1117 0 2 no rank 1462747 556 0 Thermosipho sp. 1063 1 species Thermosipho sp. 1070 species 1 0 561 1437364 1 2422 0 1735 4 Fervidobacterium 4 genus 1 species Fervidobacterium pennivorans 93466 797 0 2423 483 0 1 species Fervidobacterium islandicum 0 451 2424 species 1 Fervidobacterium nodosum 188709 0 6536 1 17 family 14 Thermotogaceae 1 1785 0 1643951 79 Pseudothermotoga genus 5 Pseudothermotoga elfii 1 species 38322 418 0 0 426 177758 Pseudothermotoga lettingae species 1 Pseudothermotoga thermarum species 1 0 466 119394 0 396 57487 species 1 Pseudothermotoga hypogea 1 2335 4737 0 129 Thermotoga 11 genus 621 0 2337 species 1 Thermotoga neapolitana Thermotoga profunda 1 species 1508420 0 446 366 0 93929 species 1 Thermotoga petrophila 0 1876 2631113 no rank 4 Thermotoga sp. Cell2 1 species 1157947 0 441 126740 0 499 1 species Thermotoga sp. RQ2 1157948 273 0 1 species Thermotoga sp. 2812B species 1 Thermotoga sp. RQ7 0 663 126738 species 1 Thermotoga naphthophila 0 442 93930 1 species Thermotoga caldifontis 1508419 394 0 1 species Thermotoga maritima 2336 0 463 0 0 1 name