members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 14585917 14431 4503 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 21083 0 242 2157 superkingdom clade 1 1783276 0 4 1 1801631 phylum 0 4 4 0 1 2490204 genus 1 1920749 species Candidatus Micrarchaeota archaeon Mia14 0 4 0 2032 43 1783275 clade phylum 28889 32 0 1485 183924 32 class 0 1485 0 342 order 10 2266 0 184 family 2267 6 18 0 1 76886 genus 18 0 species Caldivirga maquilingensis 1 76887 164450 2 genus 0 67 0 15 164451 1 Vulcanisaeta distributa species 1 985052 species Vulcanisaeta moutnovskia 0 52 62 0 genus 2270 2 0 18 Thermoproteus uzoniensis species 184117 1 0 44 species Thermoproteus tenax 1 2271 1 2276 genus 37 0 species Pyrobaculum islandicum 1 2277 0 37 family 114378 4 0 158 2268 4 genus 0 158 1365176 1 Thermofilum adornatus species 73 0 0 6 Thermofilum uzonense species 1550241 1 9 0 Thermofilum pendens species 2269 1 Thermofilum carboxyditrophus species 1483572 1 0 70 0 732 order 2281 8 family 118883 8 732 0 71 0 genus 41980 2 1006005 1 Metallosphaera cuprina species 42 0 29 0 species Metallosphaera sedula 1 43687 88 0 1 69655 genus 0 88 Sulfolobus tokodaii species 111955 1 1 2100760 genus 0 118 1 2287 species Sulfolobus solfataricus 0 118 genus 3 2284 0 364 0 36 2641160 1 no rank Sulfolobus sp. A20 species 1891280 1 0 36 273 0 1 43080 species Sulfolobus islandicus species Sulfolobus acidocaldarius 1 2285 55 0 genus 1 12914 0 91 563177 1 Acidianus hospitalis species 0 91 order 114380 12 296 0 family 2307 3 0 93 30 0 1 2308 genus species Pyrodictium delaneyi 1 1273541 0 30 0 31 1 54247 genus 0 31 Hyperthermus butylicus species 54248 1 32 0 54251 1 genus species Pyrolobus fumarii 1 54252 32 0 family Desulfurococcaceae 1 9 2272 3 0 203 54258 2 genus 0 23 160233 1 Ignicoccus hospitalis species 15 0 0 8 species Ignicoccus islandicus 1 54259 2 2273 genus 74 0 0 19 1 94694 species Desulfurococcus amylolyticus 0 55 Desulfurococcus mucosus species 2275 1 genus 2 2279 0 56 84599 1 Staphylothermus hellenicus species 0 37 2280 1 Staphylothermus marinus species 19 0 genus 1 477695 27 0 1 1200300 species Thermogladius calderae 0 27 20 0 genus 54253 1 1 54254 species Thermosphaera aggregans 20 0 871006 2 order 115 0 77 0 1 255472 family 1 200414 genus 0 77 Caldisphaera lagunensis species 200415 1 0 77 0 38 family 1 871007 genus 1 105850 38 0 Acidilobus saccharovorans species 242703 1 0 38 1 51967 phylum 0 12 1 498845 genus 0 12 0 12 498846 1 Candidatus Korarchaeum cryptofilum species 535 0 phylum 651137 10 31932 3 order 237 0 338190 3 family 0 237 genus 338191 2 146 0 1 1580092 species Candidatus Nitrosopumilus adriaticus 74 0 1 1229909 species Candidatus Nitrosopumilus sediminis 72 0 1993653 1 genus 0 91 species Candidatus Nitrosomarinus catalina 1 1898749 91 0 4 1643678 class 134 0 0 117 2 1033996 order 117 0 family 1033997 2 117 0 5 497726 2 1 Nitrososphaera genus 1 1034015 species Nitrososphaera viennensis 0 112 0 17 1968909 1 2 Candidatus Nitrosocaldales order 1 family 1 1968910 16 0 genus 1 498374 16 0 1 2045011 species Candidatus Nitrosocaldus islandicus 0 16 164 0 651142 3 no rank 0 78 genus 1 1593364 1410606 1 Candidatus Nitrosopelagicus brevis species 78 0 genus 1825023 2 86 0 species Candidatus Nitrosotenuis sp. AQ6f 1 1846278 50 0 36 0 species Candidatus Nitrosotenuis cloacae 1 1603555 19047 0 phylum 28890 198 class 183980 8 539 0 2231 8 order 0 539 Archaeoglobaceae family 2232 1 8 3 0 539 0 24 1 54260 genus Ferroglobus placidus species 54261 1 0 24 335 0 genus 2233 4 0 99 Archaeoglobus sulfaticallidus species 1316941 1 2234 1 Archaeoglobus fulgidus species 86 0 87 0 84156 1 Archaeoglobus profundus species Archaeoglobus veneficus species 58290 1 0 63 0 177 2 190818 genus 0 25 Geoglobus ahangari species 113653 1 species Geoglobus acetivorans 1 565033 0 152 10712 0 clade 2290931 100 0 5005 55 1 183963 class Halobacteria 26 Natrialbales order 1644060 1 15 3 0 1550 0 1547 14 1 1644061 family Natrialbaceae 14 159 0 genus 1 387342 159 0 1 387343 species Halopiger xanaduensis 203193 1 genus 0 238 Halobiforma lacisalsi species 229731 1 0 238 29287 1 genus 204 0 Natronococcus occultus species 29288 1 0 204 Haloterrigena genus 121871 3 1 1 0 307 0 144 species Haloterrigena daqingensis 1 588898 62320 1 Haloterrigena turkmenica species 0 162 genus 88723 2 0 188 113 0 no rank 2622230 1 Natrinema sp. J7-2 species 406552 1 113 0 75 0 69525 1 Natrinema pellirubrum species 0 112 genus 1269201 1 112 0 2621923 1 no rank species Salinarchaeum sp. Harcht-Bsk1 1 1333523 0 112 1 genus Halostagnicola 2 1 353799 138 0 species Halostagnicola larsenii 1 353800 0 137 63742 1 genus 0 127 13769 1 Natrialba magadii species 0 127 0 60 genus 1 2256 0 60 species Natronobacterium gregoryi 1 44930 Halobacteriales order 2235 1 24 43 0 2151 family Haloarculaceae 1 15 1963268 13 0 1456 genus Halorientalis 2 1 1073987 1 0 273 no rank 2648975 1 0 272 species Halorientalis sp. IM1011 1 1932360 272 0 0 203 63743 2 genus 115 0 2257 1 Natronomonas pharaonis species 0 88 Natronomonas moolapensis species 416273 1 0 146 1 2 203135 genus Halomicrobium 5 1 57705 species Halomicrobium mukohataei 0 141 238 0 1 genus Halorhabdus 1 3 146825 1 430914 species Halorhabdus tiamatea 0 66 1 146826 species Halorhabdus utahensis 0 171 0 583 5 1 2237 genus Haloarcula 6 1932004 1 Haloarcula taiwanensis species 68 0 1 51589 species Haloarcula hispanica 0 204 0 204 2624677 1 no rank 0 204 Haloarcula sp. CBA1115 species 1592728 1 0 101 species Haloarcula marismortui 1 2238 2236 8 1 Halobacteriaceae family 6 0 652 441 0 1 4 1 2239 genus Halobacterium 141 0 Halobacterium hubeiense species 1407499 1 200 0 Halobacterium salinarum species 2242 1 2668073 1 no rank 99 0 species Halobacterium sp. DL1 1 751944 0 99 genus 1 1656823 29 0 0 29 1 1604004 species Halanaeroarchaeum sulfurireducens genus 1 1980514 0 65 65 0 1 1873524 species Halodesulfurarchaeum formicicum 0 111 332246 1 genus 0 111 species Halalkalicoccus jeotgali 1 413810 Haloferacales order 1644055 1 15 38 0 1278 no rank 2678336 1 0 138 species halophilic archaeon DL31 1 756883 0 138 430 0 6 Halorubraceae family 1963271 1 6 56688 3 1 Halorubrum genus 9 0 178 0 86 Halorubrum trapanicum species 29284 1 0 83 species Halorubrum lacusprofundi 1 2247 1 1644057 genus 156 0 species Salinigranum rubrum 1 755307 0 156 0 90 1209988 1 genus 90 0 Halopenitus persicus species 1048396 1 0 672 1644056 1 7 Haloferacaceae family 2 2251 1 4 Haloferax genus 2 0 545 102 0 Haloferax mediterranei species 2252 1 0 221 1 2246 species Haloferax volcanii species Haloferax gibbonsii 1 35746 220 0 31 0 293431 1 genus Haloquadratum walsbyi species 293091 1 0 31 0 94 60846 1 genus 94 0 1 60847 species Halogeometricum borinquense 5707 0 6 Methanomicrobia class 224756 45 1 2191 13 1 Methanomicrobiales order 6 0 1403 0 76 family 196137 1 1 2202 genus 0 76 0 76 species Methanospirillum hungatei 1 2203 216 0 family 1 88404 genus 2192 1 216 0 Methanocorpusculum labreanum species 83984 1 0 216 0 513 family Methanoregulaceae 1 5 1198451 8 475087 1 genus 205 0 0 205 1 475088 species Methanosphaerula palustris 395331 1 3 Methanoregula genus 1 0 300 91 0 1 358766 species Methanoregula boonei Methanoregula formicica species 882104 1 208 0 0 592 2194 5 family 101 0 genus 1 230355 1 54120 species Methanolacinia petrolearia 101 0 1 4 45989 genus Methanoculleus 4 0 491 161 0 Methanoculleus bourgensis species 83986 1 no rank 2619537 1 129 0 1 86622 species Methanoculleus sp. MAB1 0 129 Methanoculleus marisnigri species 2198 1 0 197 order Methanocellales 4 1 570264 1 0 263 3 570265 family 0 262 1 3 1 570266 genus Methanocella 262 0 1 1175445 species Methanocella arvoryzae 0 161 0 100 1 1175444 species Methanocella conradii Methanosarcinales order 94695 1 27 8 0 4035 family Methanosarcinaceae 1 23 2206 4 0 3727 97 0 196136 1 genus Methanosalsum zhilinae species 39669 1 0 97 8 13 1 2207 genus Methanosarcina 2851 0 0 240 38027 1 Methanosarcina siciliae species 0 577 1 2208 species Methanosarcina barkeri 0 210 Methanosarcina horonobensis species 418008 1 Methanosarcina thermophila species 2210 1 111 0 208 0 2214 1 Methanosarcina acetivorans species 2644672 4 no rank 0 877 1 1434103 species Methanosarcina sp. WWM596 261 0 1434100 1 Methanosarcina sp. MTP4 species 271 0 species Methanosarcina sp. WH1 1 1434102 173 0 172 0 species Methanosarcina sp. Kolksee 1 1434099 148 0 Methanosarcina vacuolata species 2215 1 0 183 1 170861 species Methanosarcina lacustris 289 0 species Methanosarcina mazei 1 2209 genus 1 101191 0 205 205 0 species Methanomethylovorans hollandica 1 101192 0 116 genus 1 2321 0 116 Methanohalobium evestigatum species 2322 1 genus 2 2225 0 170 0 94 1 29291 species Methanococcoides burtonii 0 76 2226 1 Methanococcoides methylutens species 188 0 1 genus Methanohalophilus 3 1 2175 104 0 Methanohalophilus halophilus species 2177 1 0 83 species Methanohalophilus mahii 1 2176 0 96 2220 1 genus Methanolobus psychrophilus species 420950 1 0 96 0 300 143067 1 3 Methanosaetaceae family 2 genus 2222 2 298 0 Methanothrix soehngenii species 2223 1 0 127 1 301375 species Methanosaeta harundinacea 0 171 2360 0 183968 39 class 2258 1 39 Thermococcales order 18 0 2360 0 2342 family Thermococcaceae 38 1 2259 1 genus 1 83867 33 0 971279 1 Palaeococcus pacificus species 33 0 1 29 2263 genus Thermococcus 9 0 1969 37 0 Thermococcus chitonophagus species 54262 1 0 86 1 110164 species Thermococcus guaymasensis species Thermococcus barossii 1 54077 0 85 87 0 species Thermococcus barophilus 1 55802 2264 1 Thermococcus celer species 0 38 0 55 1 277988 species Thermococcus thioreducens 0 84 Thermococcus cleftensis species 163003 1 1 342948 species Thermococcus onnurineus 33 0 134 0 1 172049 species Thermococcus sibiricus 0 74 species Thermococcus peptonophilus 1 53952 89 0 species Thermococcus nautili 1 195522 Thermococcus kodakarensis species 311400 1 0 56 1 71997 species Thermococcus gorgonarius 0 43 44 0 1712654 1 Thermococcus piezophilus species 0 121 1 187880 species Thermococcus radiotolerans no rank 6 2627626 450 0 Thermococcus sp. 5-4 species 2008440 1 0 123 Thermococcus sp. AM4 species 246969 1 0 70 species Thermococcus sp. P6 1 122420 96 0 30 0 Thermococcus sp. 2319x1 species 1674923 1 0 55 1 2016361 species Thermococcus sp. EXT12c 1 1042877 species Thermococcus sp. 4557 0 76 84 0 582419 1 Thermococcus paralvinellae species 1 1505907 species Thermococcus eurythermalis 65 0 62 0 1 71998 species Thermococcus pacificus Thermococcus gammatolerans species 187878 1 68 0 0 53 1 72803 species Thermococcus siculi 0 83 species Thermococcus litoralis 1 2265 0 29 Thermococcus profundus species 49899 1 2260 7 genus 339 0 2629106 2 no rank 55 0 23 0 species Pyrococcus sp. NA2 1 342949 0 32 Pyrococcus sp. ST04 species 1183377 1 21 0 Pyrococcus kukulkanii species 1609559 1 1 29292 species Pyrococcus abyssi 0 46 0 119 1 53953 species Pyrococcus horikoshii 0 52 species Pyrococcus furiosus 1 2261 1 1008460 species Pyrococcus yayanosii 46 0 2283796 17 clade 1176 0 0 74 2 1803510 clade 0 74 genus 379546 2 0 50 Aciduliprofundum boonei species 379547 1 no rank 1 2633939 24 0 Aciduliprofundum sp. MAR08-339 species 673860 1 0 24 0 1102 class Thermoplasmata 1 15 183967 4 293 0 1235850 4 order 89 0 2 2517203 family 1291539 2 1 Candidatus Methanomethylophilus genus 1 0 89 88 0 1291540 1 Candidatus Methanomethylophilus alvus species 0 204 family 2 1577788 44 0 1607807 1 genus 1577791 1 Candidatus Methanoplasma termitum species 0 44 genus 1 1080709 160 0 Candidatus Methanomassiliicoccus intestinalis species 1406512 1 0 160 4 1 9 2301 order Thermoplasmatales 610 0 family 2 90142 166 0 0 166 genus 74968 2 78 0 Ferroplasma acidiphilum species 74969 1 97393 1 Ferroplasma acidarmanus species 88 0 0 114 46630 1 family genus 46631 1 114 0 species Picrophilus torridus 1 82076 0 114 141 0 2 46659 family genus 2302 2 0 141 species Thermoplasma volcanium 1 50339 97 0 Thermoplasma acidophilum species 2303 1 44 0 1 1747776 1 2 Cuniculiplasmataceae family 42 0 1 1747777 genus 0 41 41 0 Cuniculiplasma divulgatum species 1673428 1 no rank 1 1919231 0 143 143 0 species Thermoplasmatales archaeon BRNA1 1 1054217 1234666 1 no rank 195 0 methanogenic archaeon ISO4-H5 species 1495144 1 0 195 clade 34 2283794 4260 0 class 183925 20 0 2553 2553 0 1 order Methanobacteriales 1 20 2158 1 2178 family 45 0 genus 2179 1 0 45 1 2180 species Methanothermus fervidus 45 0 family 2159 18 2507 0 genus 2316 1 342 0 0 342 2317 1 Methanosphaera stadtmanae species 657 0 genus 7 2160 1 118062 species Methanobacterium congolense 73 0 200 0 species Methanobacterium formicicum 1 2162 92 0 1 877455 species Methanobacterium lacus 0 121 1 868131 species Methanobacterium paludis 57 0 1 59277 species Methanobacterium subterraneum 0 114 no rank 2627676 2 species Methanobacterium sp. MZ-A1 1 1911685 50 0 0 64 1 1379702 species Methanobacterium sp. MB1 genus 2172 6 0 1287 249 0 1 2173 species Methanobrevibacter smithii 0 265 no rank 2638681 2 species Methanobrevibacter sp. AbM4 1 224719 0 117 0 148 1 1609968 species Methanobrevibacter sp. YE315 species Methanobrevibacter ruminantium 1 83816 338 0 0 256 294671 1 Methanobrevibacter olleyae species 0 179 Methanobrevibacter millerae species 230361 1 genus 145260 4 0 221 145261 1 Methanothermobacter wolfeii species 0 19 no rank 1 2631116 34 0 866790 1 Methanothermobacter sp. CaT2 species 34 0 143 0 1 145263 species Methanothermobacter marburgensis Methanothermobacter thermautotrophicus species 145262 1 0 25 0 1707 183939 1 14 Methanococci class 1 2 order Methanococcales 1 13 2182 1706 0 0 979 family 5 2183 1 155862 genus 0 137 Methanothermococcus okinawensis species 155863 1 137 0 842 0 4 2184 genus Methanococcus vannielii species 2187 1 0 103 Methanococcus voltae species 2188 1 120 0 0 509 39152 1 Methanococcus maripaludis species 110 0 species Methanococcus aeolicus 1 42879 family 7 196117 725 0 0 610 genus 196118 6 species Methanocaldococcus vulcanius 1 73913 102 0 1 67760 species Methanocaldococcus infernus 0 43 0 118 Methanocaldococcus fervens species 83171 1 122 0 species Methanocaldococcus bathoardescens 1 1301915 no rank 2641196 1 0 152 644281 1 Methanocaldococcus sp. FS406-22 species 0 152 73 0 1 2190 species Methanocaldococcus jannaschii 0 115 196119 1 genus species Methanotorris igneus 1 2189 115 0 14550403 0 66 2 4229 1 Bacteria superkingdom 1899 0 508458 10 phylum 1899 0 10 Synergistia class 649775 1 10 1889 0 19 1 9 649776 order Synergistales Synergistaceae family 649777 1 8 16 0 1870 15 508459 1 2 Cloacibacillus genus 1274 0 0 1259 Cloacibacillus porcorum species 1197717 1 217 0 genus 1 81466 species Aminobacterium colombiense 1 81468 0 217 132 0 1 49894 genus species Acetomicrobium mobile 1 97477 0 132 81 0 336260 1 genus 0 81 336261 1 Thermovirga lienii species Thermanaerovibrio genus 81461 1 2 1 0 150 0 149 species Thermanaerovibrio acidaminovorans 1 81462 332 0 phylum 3 68297 203486 3 class 0 332 order 3 203487 0 332 3 203488 family 332 0 332 0 2 13 3 1 Dictyoglomus genus 191 0 513050 1 Dictyoglomus turgidum species species Dictyoglomus thermophilum 1 14 0 139 2161 0 phylum 200783 22 1 22 187857 class Aquificae 1 0 2161 1485951 4 order 430 0 1 1 4 558314 family Desulfurobacteriaceae 430 0 genus 1 64159 0 337 0 337 Desulfurobacterium thermolithotrophum species 64160 1 92 0 2 1 2 171868 genus Thermovibrio 0 90 species Thermovibrio ammonificans 1 228745 0 1730 order 17 32069 90150 1 no rank 0 208 208 0 genus 412592 1 0 208 412593 1 Thermosulfidibacter takaii species family 64898 10 895 0 939 1 genus 0 42 42 0 1 940 species Hydrogenobacter thermophilus 1 2713 genus 145 0 63363 1 Aquifex aeolicus species 145 0 147 0 genus 75905 2 0 99 1 75906 species Thermocrinis ruber species Thermocrinis albus 1 136094 0 48 11 genus Hydrogenobaculum 1 6 168657 561 0 550 0 5 2622382 no rank 0 116 species Hydrogenobaculum sp. SN 1 547146 species Hydrogenobaculum sp. 3684 1 547143 0 116 547145 1 Hydrogenobaculum sp. SHO species 116 0 0 86 380749 1 Hydrogenobaculum sp. Y04AAS1 species 116 0 species Hydrogenobaculum sp. HO 1 547144 224027 1 6 Hydrogenothermaceae family 1 0 627 1 182899 1 2 Persephonella genus 195 0 194 0 species Persephonella marina 1 309805 1 212790 1 3 Sulfurihydrogenibium genus 431 0 161 0 species Sulfurihydrogenibium azorense 1 309806 269 0 1 2619248 no rank 1 436114 species Sulfurihydrogenibium sp. YO3AOP1 269 0 0 155025 1783257 85 clade 4 134625 phylum 0 379 2 Kiritimatiellae class 1921781 4 1 379 0 0 377 1 3 1921782 order Kiritimatiellales 2 375 0 2 1921783 family 0 375 1 2 1921784 genus Kiritimatiella 24 0 351 1 1307763 species Kiritimatiella glycovorans Verrucomicrobia phylum 74201 24 1 4 0 146221 24 Opitutae class 414999 1 11 2159 0 order Opitutales 7 1 415000 27 0 1873 19 family Opitutaceae 6 1 134623 1846 0 688 0 2 genus Opitutus 1 2 178440 1 107709 species Opitutus terrae 686 0 0 663 278955 1 no rank 663 0 Opitutaceae bacterium TAV5 species 794903 1 1961799 1 2 Lacunisphaera genus 8 0 476 468 0 1 1838286 species Lacunisphaera limnophila 3 1 3 415001 order Puniceicoccales 262 0 415002 2 family 0 259 442430 1 2 Coraliomargarita genus 1 0 259 258 0 395922 1 Coraliomargarita akajimensis species 151 0 class 1955630 3 0 151 Methylacidiphilales order 717963 1 3 3 family 2 717964 148 0 genus 2 511745 0 148 65 0 591154 1 Methylacidiphilum fumariolicum species 511746 1 Methylacidiphilum infernorum species 0 83 class 203494 5 0 143096 Verrucomicrobiales order 48461 5 1 10 0 143096 143086 0 4 family Akkermansiaceae 1 4 1647988 2 239934 3 1 Akkermansia genus 143082 0 1679444 1 Akkermansia glycaniphila species 515 0 1 239935 species Akkermansia muciniphila 0 142565 2 417295 no rank 769 0 1 1637999 species Verrucomicrobia bacterium IMCC26134 0 348 2026799 1 Verrucomicrobia bacterium species 0 421 class 2 134549 0 42 Candidatus Xiphinematobacter genus 134550 2 1 1 0 42 0 41 no rank 1 2648876 0 41 1704307 1 Candidatus Xiphinematobacter sp. Idaho Grape species 0 5053 203682 1 34 Planctomycetes phylum 1 class Phycisphaerae 7 1 666505 1 0 991 order Phycisphaerales 4 1 666506 20 0 441 0 421 666507 1 3 Phycisphaeraceae family 6 1 1 2 666508 genus Phycisphaera 415 0 0 414 1 547188 species Phycisphaera mikurensis 549 0 2 2483366 order 0 549 family 2483367 2 2 2483368 genus 0 549 1 1941349 species Phycisphaerae bacterium ST-PulAB-D4 0 270 279 0 Phycisphaerae bacterium L21-RPul-D3 species 1940790 1 11 1 23 203683 class Planctomycetia 3765 0 order 2691354 6 0 510 2691358 2 family 172 0 1 1 2 1676125 genus Thermogutta 172 0 1 1331910 species Thermogutta terrifontis 171 0 4 2691357 family 0 338 169 0 2 Pirellula genus 123 1 2 167 0 species Pirellula staleyi 1 125 1 265488 1 2 Rhodopirellula genus 169 0 168 0 species Rhodopirellula baltica 1 265606 order Planctomycetales 1 9 112 42 0 1813 8 1 8 126 family Planctomycetaceae 1771 0 0 295 1 1649480 genus 0 295 Planctopirus limnophila species 120 1 0 980 118 1 3 Planctomyces genus 13 2648843 2 no rank 967 0 1 1632864 species Planctomyces sp. SH-PL14 0 337 0 630 species Planctomyces sp. SH-PL62 1 1636152 1 1936111 genus 254 0 1 1891926 species Fuerstia marisgermanicae 254 0 1 2 1 1649490 genus Rubinisphaera 234 0 119 1 Rubinisphaera brasiliensis species 233 0 0 1163 order 6 2691356 1163 0 6 Isosphaeraceae family 1763524 1 6 284 0 genus 127 1 284 0 1 128 species Isosphaera pallida 358 0 1 1 2 466152 genus Singulisphaera 0 357 species Singulisphaera acidiphila 1 466153 0 515 1 2 1763521 genus Paludisphaera 7 508 0 1 1387353 species Paludisphaera borealis 268 0 2691355 1 order 0 268 family 1 1914233 0 268 genus 113 1 1 2622970 no rank 0 268 Gemmata sp. SH-PL17 species 1630693 1 0 268 class 2517206 3 0 296 order Candidatus Brocadiales 3 1 1127829 4 0 296 1 1 2 1127830 family Candidatus Brocadiaceae 292 0 0 291 1 380738 genus 291 0 species Candidatus Kuenenia stuttgartiensis 1 174633 2352 0 phylum 3 256845 class Lentisphaeria 1 3 1313211 11 0 2352 0 2341 Victivallales order 278082 1 2 648 no rank 1674876 1 0 1693 species Victivallales bacterium CCUG 44730 1 2094242 0 1693 phylum 204428 20 0 1020 class Chlamydiia 1 20 204429 1 0 1020 675 0 51291 12 order 0 675 12 809 family no rank 12 1113537 675 0 1 12 1 810 genus Chlamydia 675 0 813 1 Chlamydia trachomatis species 0 38 21 0 83559 1 Chlamydia suis species 73 0 1457153 1 Chlamydia gallinacea species 0 39 Chlamydia pneumoniae species 83558 1 114 0 83554 1 Chlamydia psittaci species 1 83560 species Chlamydia muridarum 62 0 1 83555 species Chlamydia abortus 0 71 28 0 species Chlamydia caviae 1 83557 0 105 Chlamydia felis species 83556 1 76 0 species Chlamydia pecorum 1 85991 0 47 Chlamydia avium species 1457141 1 1 Parachlamydiales order 1963360 1 7 344 0 family 92714 1 96 0 0 96 1 71666 genus species Waddlia chondrophila 1 71667 0 96 3 92713 family 0 179 0 102 1 2 83551 genus Parachlamydia 1 species Parachlamydia acanthamoebae 1 83552 0 101 genus 282132 1 77 0 species Candidatus Protochlamydia naegleriophila 1 389348 77 0 Simkaniaceae family 92712 1 2 1 0 68 67 0 genus 1 34093 species Simkania negevensis 1 83561 0 67 clade 347 1783270 0 7088411 7085767 0 clade 68336 332 0 4961 1090 20 phylum class Chlorobia 1 20 191410 6 0 4961 4955 0 49 order Chlorobiales 1 19 191411 4906 0 1 191412 1 18 Chlorobiaceae family 2186 0 no rank 8 274493 genus Pelodictyon 3 1 1099 9 0 651 Pelodictyon luteolum species 1100 1 461 0 34090 1 Pelodictyon phaeoclathratiforme species 181 0 Chlorobium genus 1091 5 1 3 0 1535 358 0 species Chlorobium limicola 1 1092 1 1096 species Chlorobium phaeobacteroides 671 0 Chlorobium phaeovibrioides species 1094 1 260 0 337090 1 Chlorobium chlorochromatii species 243 0 1 4 256319 genus Chlorobaculum 6 0 1456 579 0 1 274537 species Chlorobaculum limnaeum 0 393 1097 1 Chlorobaculum tepidum species 1 274539 species Chlorobaculum parvum 0 478 0 1040 genus 4 1101 0 229 1 1102 species Prosthecochloris aestuarii no rank 3 2632826 811 0 0 194 Prosthecochloris sp. CIB 2401 species 1868325 1 Prosthecochloris sp. HL-130-GSB species 1974213 1 0 268 281093 1 Prosthecochloris sp. GSB1 species 0 349 1 100715 genus 0 223 223 0 1 100716 species Chloroherpeton thalassium phylum 4 1134404 884 0 class 795747 4 0 884 4 795748 order 0 884 1 1334117 family 0 446 446 0 genus 1134403 1 1134405 1 Melioribacter roseus species 446 0 1 1 3 795749 family Ignavibacteriaceae 438 0 1 2 1 795750 genus Ignavibacterium 437 0 591197 1 Ignavibacterium album species 436 0 976 1 308 Bacteroidetes phylum 2 0 7079922 0 24855 53 1 768503 class Cytophagia 55 95 1 52 768507 order Cytophagales 24800 0 11626 0 23 1853232 1 16 Hymenobacteraceae family 0 8339 Hymenobacter genus 89966 1 8 25 no rank 5 2615202 5777 0 1441 0 species Hymenobacter sp. PAMC 26554 1 1484116 1356852 1 Hymenobacter sp. APR13 species 1309 0 Hymenobacter sp. DG25A species 1385663 1 788 0 species Hymenobacter sp. DG25B 1 1385664 0 967 1 1484118 species Hymenobacter sp. PAMC 26628 1272 0 1349 0 Hymenobacter sedentarius species 1411621 1 1188 0 species Hymenobacter swuensis 1 1446467 0 1876 1 4 1379908 genus Rufibacter 2 643 0 species Rufibacter tibetensis 1 512763 1231 0 2639626 2 no rank 678 0 1 1379909 species Rufibacter sp. DG15C 1 1379910 species Rufibacter sp. DG31D 553 0 2 genus Pontibacter 1 3 323449 1388 0 388950 1 Pontibacter akesuensis species 618 0 Pontibacter korlensis species 400092 1 0 768 0 7222 Cytophagaceae family 89373 1 16 5 0 1171 105 1 genus 1171 0 106 1 Runella slithyformis species 713 0 1 genus Leadbetterella 2 1 319458 1 316068 species Leadbetterella byssophila 0 712 Spirosoma genus 107 1 6 7 0 3362 584 0 1211326 1 Spirosoma aerolatum species 0 610 1 1379870 species Spirosoma radiotolerans species Spirosoma montaniterrae 1 1178516 777 0 0 740 Spirosoma sp. HA7 species 2057025 1 564064 1 Spirosoma rigui species 0 644 628 0 3 genus Fibrella 1 2 861914 0 625 1 2620963 no rank Fibrella sp. ES10-3-2-2 species 1834519 1 0 625 1 2 1 978 genus Cytophaga 542 0 541 0 species Cytophaga hutchinsonii 1 985 801 0 1 120831 1 2 Dyadobacter genus 94254 1 Dyadobacter fermentans species 0 800 1 6 563798 family Cyclobacteriaceae 2 0 1923 genus 68288 2 0 645 344 0 Cyclobacterium amurskyense species 320787 1 Cyclobacterium marinum species 104 1 301 0 genus 246875 1 324 0 species Algoriphagus sp. M8-2 1 1727163 324 0 genus 1 390846 0 608 608 0 Echinicola vietnamensis species 390884 1 1 232244 genus 344 0 species Belliella baltica 1 232259 344 0 1 family Bernardetiaceae 2 1 1937968 428 0 0 427 1 1937972 genus 999 1 Bernardetia litoralis species 427 0 0 407 family 2762301 2 genus Marivirga 2 1 869806 1 0 407 Marivirga tractuosa species 1006 1 406 0 0 187 1501348 1 3 Amoebophilaceae family 1 70 0 1 273135 genus 0 70 2641185 1 no rank 70 0 Cardinium endosymbiont of Encarsia pergandiella species 249402 1 0 116 genus 281119 1 0 116 1 281120 species Candidatus Amoebophilus asiaticus 1 Persicobacteraceae family 1853234 1 3 1043 0 1042 0 1 genus Persicobacter 1 2 59740 1041 0 no rank 2664020 1 1085624 1 Persicobacter sp. JZB09 species 0 1041 1869 0 2 family Flammeovirgaceae 3 1 200667 887 0 genus 59739 1 no rank 2637820 1 887 0 Flammeovirga sp. MY04 species 1191459 1 0 887 0 980 no rank 340671 1 species Flammeovirgaceae bacterium 311 1 1257021 0 980 74322 0 24 class Flavobacteriia 1 138 117743 200644 137 1 Flavobacteriales order 26 0 74298 0 110 1 1755828 family 0 110 1 1755829 genus 0 110 242600 1 Ichthyobacterium seriolicida species family 2762318 20 34221 0 6475 0 no rank 2782232 10 0 5874 9 1 59732 genus Chryseobacterium 21 253 1 Chryseobacterium indologenes species 1290 0 species Chryseobacterium gallinarum 1 1324352 568 0 1265445 1 Chryseobacterium camelliae species 858 0 no rank 3 2593645 2064 0 1 878220 species Chryseobacterium sp. StRB126 527 0 1 2015076 species Chryseobacterium sp. T16E-39 762 0 1 1721091 species Chryseobacterium sp. IHB B 17019 775 0 481 0 1 558152 species Chryseobacterium piperi 592 0 Chryseobacterium glaciei species 1685010 1 1 2782228 genus 601 0 species Chryseobacterium taklimakanense 1 536441 601 0 0 21280 28250 1 2 Ornithobacterium genus 12 0 21268 28251 1 Ornithobacterium rhinotracheale species 0 848 1 34084 genus 848 0 Riemerella anatipestifer species 34085 1 genus 1 1013 0 206 0 206 species Weeksella virosa 1 1014 5412 0 13 1 6 308865 genus Elizabethkingia 1756150 1 Elizabethkingia genomosp. 4 species 649 0 0 699 Elizabethkingia genomosp. 3 species 1756149 1 755 0 238 1 Elizabethkingia meningoseptica species Elizabethkingia miricola species 172045 1 0 1377 species Elizabethkingia anophelis 1 1117645 0 1919 0 350 1 1333713 family 350 0 genus 1 267986 0 350 Owenweeksia hongkongensis species 253245 1 0 107 2 313602 no rank 0 30 genus 1 1940138 species Candidatus Walczuchella monophlebidarum 1 1415657 0 30 1 336809 genus 77 0 77 0 Candidatus Sulcia muelleri species 336810 1 49546 1 99 Flavobacteriaceae family 169 0 38424 442 0 2 Zobellia genus 112040 1 2 0 440 species Zobellia galactanivorans 1 63186 909 0 no rank 2 61432 1 531844 species Flavobacteriaceae bacterium 3519-10 0 336 0 573 1150389 1 Flavobacteriaceae bacterium UJ101 species genus 1 336276 228 0 2615019 1 no rank 0 228 species Olleya sp. Bg11-27 1 2058135 228 0 26 1016 1 15 Capnocytophaga genus 10217 0 species Capnocytophaga sputigena 1 1019 0 1234 Capnocytophaga leadbetteri species 327575 1 1399 0 species Capnocytophaga cynodegmi 1 28189 0 455 1017 1 Capnocytophaga gingivalis species 0 459 no rank 6 2640652 4256 0 1316596 1 Capnocytophaga sp. oral taxon 878 species 1190 0 Capnocytophaga sp. oral taxon 323 species 1705617 1 817 0 species Capnocytophaga sp. H4358 1 1945658 0 359 0 741 1 1316593 species Capnocytophaga sp. oral taxon 864 Capnocytophaga sp. H2931 species 1945657 1 476 0 209053 1 Capnocytophaga sp. ChDC OS43 species 673 0 0 651 species Capnocytophaga stomatis 1 1848904 species Capnocytophaga haemolytica 1 45243 0 477 665 0 1 28188 species Capnocytophaga canimorsus 595 0 species Capnocytophaga ochracea 1 1018 2 111500 genus 0 709 400 0 Muricauda ruestringensis species 111501 1 species Muricauda lutaonensis 1 516051 309 0 0 536 2 1 178469 genus Arenibacter 1 0 535 species Arenibacter algicola 1 616991 252356 1 5 Maribacter genus 1 0 1660 no rank 2615042 3 1279 0 0 548 1644130 1 Maribacter sp. 1_2014MBL_MicDiv species 0 508 1 1836467 species Maribacter sp. T28 0 223 Maribacter sp. HTCC2170 species 313603 1 1178778 1 Maribacter cobaltidurans species 380 0 389486 1 genus 260 0 2648869 1 no rank 0 260 Sediminicola sp. YIK13 species 1453352 1 0 260 genus Lacinutrix 1 4 291183 1 0 1174 species Lacinutrix venerupis 1 1486034 274 0 2647285 2 no rank 0 899 0 564 1 983544 species Lacinutrix sp. 5H-3-7-4 Lacinutrix sp. Bg11-31 species 2057808 1 0 335 462 0 genus 1 1204360 0 462 Siansivirga zeaxanthinifaciens species 762954 1 1 2700084 genus 560 0 0 560 Lutibacter sp. LPB0138 species 1850246 1 genus 1 1209327 0 554 Flavivirga eckloniae species 1803846 1 0 554 2207 0 5 genus Polaribacter 1 6 52959 0 515 1774273 1 Polaribacter vadi species 569 0 996801 1 Polaribacter reichenbachii species 196858 3 no rank 0 1118 434 0 313598 1 Polaribacter sp. MED152 species Polaribacter sp. ALD11 species 2058137 1 289 0 395 0 1 1529069 species Polaribacter sp. BM10 0 475 2 1 417127 genus Zunongwangia 1 0 474 398743 1 Zunongwangia profunda species 0 392 1 2 358023 genus Lutibacter 1 1622118 1 Lutibacter profundi species 0 391 genus 216431 1 0 162 162 0 species Croceibacter atlanticus 1 313588 genus 104267 4 1289 0 263 0 1 1850252 species Tenacibaculum todarodis Tenacibaculum jejuense species 584609 1 0 366 669041 1 Tenacibaculum dicentrarchi species 0 293 Tenacibaculum maritimum species 107401 1 0 367 genus 1 1518147 356 0 1 1790137 species Wenyingzhuangia fucanilytica 356 0 0 400 1 83612 genus species Psychroflexus torquis 1 57029 0 400 10 genus Myroides 5 1 76831 1694 0 2 2642485 no rank 0 729 1 1458492 species Myroides sp. ZB35 400 0 329 0 species Myroides sp. A21 1 1583100 1 480520 species Myroides profundi 0 306 649 0 76832 1 Myroides odoratimimus species 143222 1 genus 0 447 1 2633436 no rank 447 0 447 0 1 1729720 species Salegentibacter sp. T436 1 1176327 genus 265 0 no rank 2636237 1 0 265 2094025 1 Aureitalea sp. RR4-38 species 0 265 1 393005 genus 0 371 2069432 1 Tamlana sp. UJ94 species 371 0 Seonamhaeicola genus 1649495 1 2 1 0 393 0 392 no rank 2622645 1 0 392 species Seonamhaeicola sp. S2-3 1 1936081 292691 1 5 Gramella genus 1 0 1667 425 0 species Gramella flava 1 1486245 1 411153 species Gramella forsetii 0 373 Gramella sp. LPB0144 species 1913577 1 267 0 0 601 2126553 1 Gramella sp. SH35 species 0 712 genus 286104 2 2 2615021 no rank 0 712 species Winogradskyella sp. J14-2 1 1936080 0 371 341 0 1 754409 species Winogradskyella sp. PG-2 0 356 1 153265 genus Aequorivita sublithincola species 101385 1 0 356 2 1 9 237 genus Flavobacterium 4872 0 0 286 Flavobacterium branchiophilum species 55197 1 0 228 species Flavobacterium psychrophilum 1 96345 1464 0 1 986 species Flavobacterium johnsoniae 0 742 Flavobacterium columnare species 996 1 species Flavobacterium indicum 1 312277 419 0 779 0 1 1306519 species Flavobacterium commune 347 0 1 1763534 species Flavobacterium crassostreae species Flavobacterium gilvum 1 1492737 605 0 0 592 Dokdonia genus 326319 1 4 12 0 357 2 2615033 no rank 1 313590 species Dokdonia sp. MED134 107 0 250 0 1 983548 species Dokdonia sp. 4H-3-7-5 1 326320 species Dokdonia donghaensis 223 0 Robiginitalea genus 252306 1 2 1 0 650 252307 1 Robiginitalea biformata species 649 0 563 0 genus 1 261827 Algibacter alginicilyticus species 1736674 1 563 0 0 1242 4 1 104264 genus Cellulophaga 1 1 979 species Cellulophaga lytica 363 0 species Cellulophaga algicola 1 59600 0 328 1 76594 species Cellulophaga baltica 0 550 genus 2 225842 0 347 no rank 2 2644710 0 347 0 206 1336794 1 Formosa sp. Hel1_33_131 species Formosa sp. Hel3_A1_48 species 1336795 1 0 141 1092 0 genus 4 363408 Nonlabens sediminis species 319236 1 261 0 536 0 2615035 2 no rank Nonlabens sp. MIC269 species 1476901 1 295 0 Nonlabens sp. MB-3u-79 species 2058134 1 241 0 295 0 328515 1 Nonlabens dokdonensis species 0 530 1853230 1 3 Crocinitomicaceae family 3 527 0 16 1 2 332102 genus Fluviicola Fluviicola taffensis species 191579 1 0 511 2 Blattabacteriaceae family 39782 1 10 530 0 0 528 34098 9 1 Blattabacterium genus 11 1 1653831 species Blattabacterium cuenoti 93 0 0 87 species Blattabacterium punctulatus 1 164514 337 0 2647581 6 no rank species Blattabacterium sp. (Periplaneta americana) 1 367488 62 0 0 41 species Blattabacterium sp. (Blaberus giganteus) 1 1186051 0 58 1 1316444 species Blattabacterium sp. (Nauphoeta cinerea) 48 0 Blattabacterium sp. (Blatta orientalis) species 367806 1 64 0 Blattabacterium sp. (Blattella germanica) species 624186 1 39768 1 Blattabacterium sp. (Mastotermes darwiniensis) species 0 64 order Bacteroidetes Order II. Incertae sedis 1 6 1100069 43 0 2176 7 563843 5 1 Rhodothermaceae family 2133 0 0 360 genus 1 146918 146919 1 Salinibacter ruber species 0 360 0 823 no rank 1196022 1 0 823 1 1779382 species Rhodothermaceae bacterium RA 29548 1 2 Rhodothermus genus 15 0 943 928 0 species Rhodothermus marinus 1 29549 class Saprospiria 5 1 1937959 1 0 1413 0 1412 order Saprospirales 4 1 1936988 6 family 2 1937961 1148 0 1148 0 2 2349 1 2 Haliscomenobacter genus species Haliscomenobacter hydrossis 1 2350 1146 0 258 0 89374 1 family 258 0 genus 1 1007 1 1008 species Saprospira grandis 258 0 0 6958557 Bacteroidia class 200643 1 68 48 266 1 56 171549 order Bacteroidales 6955494 0 1 2005523 family 0 1720 0 1720 1 346096 genus 1720 0 species Paludibacter propionicigenes 1 185300 0 647 185291 1 no rank 0 647 1 1400053 species Bacteroidales bacterium CF 539007 0 18 family Tannerellaceae 1 7 2005525 522568 0 56 genus Parabacteroides 1 3 375288 1 823 species Parabacteroides distasonis 0 200257 1 2649774 no rank 0 322255 322255 0 2025876 1 Parabacteroides sp. CT06 species 5 genus Tannerella 1 3 195950 16421 0 0 13835 species Tannerella forsythia 1 28112 2581 0 no rank 2620507 1 0 2581 species Tannerella sp. oral taxon HOT-286 1 712710 Barnesiellaceae family 2005519 1 3 2 0 70701 genus Barnesiella 2 1 397864 11 0 70699 397865 1 Barnesiella viscericola species 0 70688 17 815 11 1 Bacteroidaceae family 2120352 0 32276 genus Bacteroides 1 10 816 2120335 0 species Bacteroides heparinolyticus 1 28113 0 112952 0 97838 Bacteroides zoogleoformans species 28119 1 0 434934 species Bacteroides caccae 1 47678 339916 0 246787 1 Bacteroides cellulosilyticus species 143143 0 Bacteroides helcogenes species 290053 1 1 818 species Bacteroides thetaiotaomicron 231312 0 Bacteroides ovatus species 28116 1 0 307763 0 272604 species Bacteroides fragilis 1 817 Bacteroides caecimuris species 1796613 1 147597 0 4 333046 no rank 3932761 0 368 0 genus 511434 1 Candidatus Azobacteroides pseudotrichonymphae species 511435 1 0 368 genus 909656 3 0 3932393 1 357276 species Bacteroides dorei 1863515 0 species Bacteroides salanitronis 1 376805 0 67215 1 821 species Bacteroides vulgatus 2001663 0 0 86812 Rikenellaceae family 171550 5 1 4 18 genus Alistipes 2 1 239759 85854 0 species Alistipes finegoldii 1 214856 0 85836 2 genus Mucinivorans 2 1 1611681 954 0 952 0 1 1433126 species Mucinivorans hirudinis 0 10850 2005520 6 family 1201 0 1 genus Fermentimonas 1 2 1784836 1 1562970 species Fermentimonas caenicola 0 1200 2548 0 1 Petrimonas genus 307628 1 2 0 2547 1642646 1 Petrimonas mucosa species Proteiniphilum genus 294702 2 1 2 0 7101 7099 0 1642647 1 Proteiniphilum saccharofermentans species 0 109496 1 11 171552 family Prevotellaceae 6 838 1 10 Prevotella genus 69 0 109490 52227 1 Prevotella dentalis species 12016 0 0 3398 Prevotella denticola species 28129 1 80501 0 28131 1 Prevotella intermedia species 3667 0 1 839 species Prevotella ruminicola 0 1937 species Prevotella enoeca 1 76123 no rank 2638335 1 920 0 920 0 1 652716 species Prevotella sp. oral taxon 299 1177574 1 Prevotella jejuni species 0 2168 1 589436 species Prevotella fusca 2444 0 2370 0 1 28132 species Prevotella melaninogenica family Porphyromonadaceae 4 1 171551 14 0 5167 5153 0 2 3 1 836 genus Porphyromonas species Porphyromonas gingivalis 1 837 0 4587 0 564 1 28123 species Porphyromonas asaccharolytica 77715 0 family 2 1853231 2 1 283168 genus Odoribacter 1 0 77715 1 28118 species Odoribacter splanchnicus 77714 0 0 3015 order Marinilabiliales 1 11 1970189 1 0 791 Marinifilaceae family 1573805 2 1 2 1 2060722 genus 0 789 789 0 Marinifilaceae bacterium SPP2 species 1717717 1 2 Prolixibacteraceae family 1471398 1 3 1316 0 1314 0 2 1471399 1 2 Draconibacterium genus 1 1168034 species Draconibacterium orientale 1312 0 family Marinilabiliaceae 1 2 558415 3 0 555 0 552 1193324 1 genus Alkalitalea saponilacus species 889453 1 0 552 1 1970190 1 3 Salinivirgaceae family 352 0 1 1970191 1 2 Salinivirga genus 351 0 1 1307839 species Salinivirga cyanobacteriivorans 0 350 0 6924 1 14 1853228 class Chitinophagia 16 7 order Chitinophagales 1 13 1853229 6908 0 563835 1 12 Chitinophagaceae family 6 0 6901 3 1 79328 genus Chitinophaga 2 0 1770 1241 0 Chitinophaga pinensis species 79329 1 527 0 1 2029983 species Chitinophagaceae bacterium 13 398041 1 2 Flavisolibacter genus 1 0 418 1 1492898 species Flavisolibacter tropicus 417 0 1303 0 649460 1 genus 1303 0 Filimonas lacunae species 477680 1 1 1769012 genus 0 665 0 665 2636138 1 no rank 665 0 1 1850526 species Arachidicoccus sp. BS20 4 genus Niastella 1 2 354354 1137 0 1 354356 species Niastella koreensis 0 1133 379899 2 genus 0 1602 863 0 Niabella soli species 446683 1 1176587 1 Niabella ginsenosidivorans species 0 739 117747 1 23 Sphingobacteriia class 5 0 11673 11668 0 14 order Sphingobacteriales 22 1 200666 16 21 1 84566 family Sphingobacteriaceae 11654 0 4 1 423349 genus Mucilaginibacter 6 0 1905 species Mucilaginibacter sp. BJC16-A31 1 1234841 0 428 746 0 1 1550579 species Mucilaginibacter gotjawali no rank 2617802 1 0 725 Mucilaginibacter sp. PAMC 26640 species 1300914 1 725 0 no rank 84568 1 553 0 1986952 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 0 553 11 28453 1 6 Sphingobacterium genus 3805 0 3185 0 no rank 2609468 4 0 502 1538644 1 Sphingobacterium sp. ML3W species 839 0 species Sphingobacterium sp. B29 1 1933220 855 0 species Sphingobacterium sp. 21 1 743722 989 0 1 2003121 species Sphingobacterium sp. G1-14 species Sphingobacterium mizutaii 1 1010 609 0 0 3927 Pedobacter genus 84567 1 6 3 0 763 1 363852 species Pedobacter ginsengisoli no rank 1 2628915 0 868 868 0 1727164 1 Pedobacter sp. PACM 27299 species 0 582 188932 1 Pedobacter cryoconitis species 1 430522 species Pedobacter steynii 860 0 1 984 species Pedobacter heparinus 0 851 0 626 1 929509 genus 626 0 Solitalea canadensis species 995 1 1 Pseudopedobacter genus 1649482 1 2 822 0 821 0 species Pseudopedobacter saltans 1 151895 phylum 142182 8 0 1586 2 219685 1 8 Gemmatimonadetes class 1586 0 Gemmatimonadales order 219686 1 7 30 0 1584 0 1554 219687 6 1 Gemmatimonadaceae family 4 4 2 1 1706036 genus Gemmatirosa 742 0 0 738 species Gemmatirosa kalamazoonesis 1 861299 173479 1 3 Gemmatimonas genus 10 0 808 173480 1 Gemmatimonas aurantiaca species 482 0 316 0 Gemmatimonas phototrophica species 1379270 1 0 850 phylum 65842 5 0 850 204430 5 1 Fibrobacteria class 4 0 846 1 4 218872 order Fibrobacterales 4 family Fibrobacteraceae 1 3 204431 1 0 842 0 841 832 1 2 Fibrobacter genus 3 species Fibrobacter succinogenes 1 833 0 838 208 0 phylum 2 456828 208 0 1 genus Candidatus Cloacimonas 1 2 456826 0 207 1 456827 species Candidatus Cloacimonas acidaminovorans 1 Elusimicrobia phylum 74152 8 1 786 0 0 153 3 641853 class 0 153 1 3 641854 order Elusimicrobiales 3 150 0 2 Elusimicrobiaceae family 641876 1 2 genus 1 423604 0 148 148 0 1 423605 species Elusimicrobium minutum 99260 1 no rank 109 0 0 109 1 167965 species uncultured Termite group 1 bacterium 523 0 class 447830 3 0 523 3 1783344 order 523 0 2 Endomicrobiaceae family 1783343 1 3 1408194 2 genus 521 0 1 1408281 species Endomicrobium proavitum 0 359 species Candidatus Endomicrobium trichonymphae 1 1408204 0 162 12 40117 phylum 0 1849 10 1 12 203693 class Nitrospira 1849 0 0 1839 189778 1 11 Nitrospirales order 19 1820 0 5 1 10 189779 family Nitrospiraceae 1030 0 8 genus Nitrospira 5 1 1234 1 1325564 species Nitrospira japonica 132 0 species Nitrospira defluvii 1 330214 271 0 species Nitrospira moscoviensis 1 42253 0 473 146 0 species Candidatus Nitrospira inopinata 1 1715989 genus 1 28261 258 0 28262 1 Thermodesulfovibrio yellowstonii species 258 0 genus 179 3 527 0 261385 1 species group 194 0 0 194 1 1660083 species Leptospirillum sp. Group II 'CF-1' 0 258 1 261386 species group 0 258 178606 1 Leptospirillum ferriphilum species species group 655606 1 0 75 1 180 species Leptospirillum ferrooxidans 75 0 0 16935 phylum 54 203691 16935 0 88 1 54 203692 class Spirochaetia 0 12722 Spirochaetales order 136 1 40 467 94 Spirochaetaceae family 137 1 22 10649 0 1 1616789 genus 548 0 0 548 Salinispira pacifica species 1307761 1 474 0 genus 1911556 1 0 474 1 55206 species Sediminispirochaeta smaragdinae 196 genus Treponema 12 1 157 7511 0 160 1 Treponema pallidum species 0 39 0 491 Treponema caldarium species 215591 1 0 544 species Treponema denticola 1 158 0 392 Treponema primitia species 88058 1 Treponema paraluiscuniculi species 53435 1 0 39 species Treponema putidum 1 221027 0 1340 1 81028 species Treponema brennaborense 0 674 0 342 1 409322 species Treponema pedis 580 0 species Treponema azotonutricium 1 150829 0 1177 2638727 1 no rank 0 1177 1539298 1 Treponema sp. OMZ 838 species 1697 0 1 167 species Treponema succinifaciens Spirochaeta genus 146 1 3 10 0 950 503 0 Spirochaeta thermophila species 154 1 Spirochaeta africana species 46355 1 437 0 1072 0 3 1 4 399320 genus Sphaerochaeta species Sphaerochaeta globosa 1 1131703 0 437 1 1131707 species Sphaerochaeta pleomorpha 296 0 species Sphaerochaeta coccoides 1 273376 336 0 1 17 1643685 family Borreliaceae 6 0 1606 0 631 genus Borrelia 8 1 138 4 92 0 1 141 species Borrelia parkeri 0 58 143 1 Borrelia anserina species 75 0 40834 1 Borrelia duttonii species species Borrelia hermsii 1 140 74 0 species Borrelia miyamotoi 1 47466 182 0 44449 1 Borrelia recurrentis species 0 63 83 0 142 1 Borrelia turicatae species 969 0 13 1 8 64895 genus Borreliella species Borreliella afzelii 1 29518 0 203 201 0 1 1674146 species Borrelia mayonii Borreliella garinii species 29519 1 0 184 0 127 species Borreliella burgdorferi 1 139 123 0 species Borreliella bissettii 1 64897 58 0 1 664662 species Borreliella bavariensis 0 60 species Borreliella valaisiana 1 62088 6 1643686 order 0 2415 15 1 6 143786 family Brachyspiraceae 2415 0 0 2400 genus Brachyspira 5 1 29521 16 0 551 species Brachyspira murdochii 1 84378 1 52584 species Brachyspira pilosicoli 691 0 1 159 species Brachyspira hyodysenteriae 0 612 1 84377 species Brachyspira intermedia 0 530 order 7 1643688 1710 0 1710 0 family 7 170 genus 1 338321 0 296 296 0 Turneriella parva species 29510 1 0 1414 genus Leptospira 1 6 171 5 0 215 28183 1 Leptospira santarosai species 1 172 species Leptospira biflexa 112 0 species Leptospira interrogans 1 173 758 0 210 0 1 174 species Leptospira borgpetersenii 1 28452 species Leptospira alstonii 114 0 0 99 clade 2498710 2 0 99 phylum 67814 2 0 99 class 693071 2 99 0 order 2 693072 0 99 family 2 693073 1 Caldisericum genus 693074 1 2 99 0 Caldisericum exile species 693075 1 0 98 phylum 57723 20 3546 0 1 1 3 1562566 class Blastocatellia 318 0 Chloracidobacterium genus 458032 1 2 5 0 317 458033 1 Chloracidobacterium thermophilum species 0 312 Acidobacteriia class 204432 1 17 11 0 3228 27 Solibacterales order 332160 4 1 734 0 0 707 Solibacteraceae family 332161 1 3 5 4 1 2 332162 genus Candidatus Solibacter 702 0 0 698 332163 1 Candidatus Solibacter usitatus species 2483 0 27 Acidobacteriales order 204433 12 1 1 11 204434 family Acidobacteriaceae 27 0 2456 391 0 2 1 2 33973 genus Acidobacterium 0 389 species Acidobacterium capsulatum 1 33075 2 1 658061 genus Candidatus Koribacter 5 0 502 658062 1 Candidatus Koribacter versatilis species 497 0 0 805 392733 3 1 Terriglobus genus 9 1 392734 species Terriglobus roseus 409 0 1 870903 species Terriglobus saanensis 387 0 940557 3 1 Granulicella genus 1 0 731 273 0 940615 1 Granulicella tundricola species species Granulicella mallensis 1 940614 457 0 0 681 phylum 1930617 4 0 681 4 1962850 class 2 1 4 1962852 order Calditrichales 681 0 0 679 Calditrichaceae family 1962854 3 1 3 0 676 genus Caldithrix 2 1 187144 1 675 0 1 187145 species Caldithrix abyssi 2 2138240 phylum 0 156 2 2138243 1 2 Coprothermobacteria class 156 0 154 0 order 1 2138246 154 0 2138247 1 family 68335 1 genus 154 0 species Coprothermobacter proteolyticus 1 35786 0 154 740 0 4 200938 phylum 7 118001 1 4 Chrysiogenetes class 740 0 189769 1 3 Chrysiogenales order 2 0 733 1 2 189770 family Chrysiogenaceae 3 0 731 genus 1 393029 0 728 0 728 1 936456 species Desulfurispirillum indicum 270 1934 1 1224 phylum Proteobacteria 733305 0 class 1807140 6 1031 0 1031 0 12 order Acidithiobacillales 1 6 225057 1 5 225058 family Acidithiobacillaceae 4 0 1019 0 1015 Acidithiobacillus genus 119977 1 4 21 species Acidithiobacillus ferrivorans 1 160808 0 347 0 301 species Acidithiobacillus caldus 1 33059 species Acidithiobacillus ferrooxidans 1 920 0 346 0 72919 191 68525 subphylum 30 67 1 29547 class Epsilonproteobacteria 24833 0 24342 0 759 Campylobacterales order 213849 62 1 family 2771471 3 0 693 0 207 genus 1 286130 207 0 species Sulfuricurvum kujiense 1 148813 0 486 2 202746 genus species Sulfurimonas autotrophica 1 202747 308 0 39766 1 Sulfurimonas denitrificans species 178 0 0 2205 Helicobacteraceae family 72293 1 14 3 0 2049 genus Helicobacter 12 1 209 12 212 1 Helicobacter acinonychis species 49 0 0 136 Helicobacter bilis species 37372 1 species Helicobacter pylori 1 210 0 808 133 0 32025 1 Helicobacter hepaticus species Helicobacter cetorum species 138563 1 319 0 0 88 1 2593540 no rank 0 88 222136 1 Helicobacter sp. MIT 01-6242 species 112 0 species Helicobacter cinaedi 1 213 0 112 Helicobacter typhlonius species 76936 1 1 1591088 species Helicobacter himalayensis 0 87 131 0 Helicobacter felis species 214 1 62 0 Helicobacter mustelae species 217 1 153 0 1 843 genus 153 0 species Wolinella succinogenes 1 844 family Campylobacteraceae 1 41 72294 1872 0 19912 0 1422 57665 9 1 Sulfurospirillum genus 14 0 557 no rank 2618290 3 260 0 Sulfurospirillum sp. UCH001 species 1581011 1 218 0 species Sulfurospirillum sp. SL2-1 1 1986224 Sulfurospirillum sp. JPD-1 species 220622 1 0 79 154 0 1 366522 species Sulfurospirillum cavolei 0 130 1 66821 species Sulfurospirillum multivorans 209 0 Sulfurospirillum halorespirans species 194424 1 221 0 1 44674 species Sulfurospirillum barnesii species Sulfurospirillum deleyianum 1 65553 137 0 no rank 5 2321108 0 2349 no rank 2321207 1 0 518 Arcobacter sp. L species 944547 1 518 0 2 Arcobacter genus 28196 1 3 989 0 1 28197 species Arcobacter butzleri 422 0 565 0 28199 1 Arcobacter nitrofigilis species genus 2321187 1 0 842 842 0 1 1850254 species Arcobacter sp. LPB0137 0 14269 1 26 194 genus Campylobacter 314 109 0 28898 1 Campylobacter helveticus species 284 0 1965231 1 Campylobacter pinnipediorum species Campylobacter iguaniorum species 1244531 1 219 0 species Campylobacter sputorum 1 206 314 0 200 1 Campylobacter curvus species 175 0 species Campylobacter avium 1 522485 136 0 no rank 4 2593542 0 514 128 0 Campylobacter sp. RM8964 species 1660074 1 0 108 Campylobacter sp. RM6137 species 1660073 1 163 0 species Campylobacter sp. RM16704 1 1500960 species Campylobacter sp. RM12175 1 1660076 115 0 1 75658 species Campylobacter lanienae 0 609 0 422 1 201 species Campylobacter lari 1 197 species Campylobacter jejuni 3352 0 4913 0 195 1 Campylobacter coli species 140 0 species Campylobacter subantarcticus 1 497724 827 1 Campylobacter ureolyticus species 0 485 638 0 Campylobacter fetus species 196 1 0 272 Campylobacter volucris species 1031542 1 species Campylobacter cuniculorum 1 374106 0 95 species Campylobacter concisus 1 199 0 349 240 0 76517 1 Campylobacter hominis species species Campylobacter gracilis 1 824 190 0 0 172 488546 1 Campylobacter peloridis species 0 185 1 198 species Campylobacter hyointestinalis 1 260714 species Campylobacter insulaenigrae 142 0 773 0 2771472 3 family 269260 1 genus 0 359 Nitratifractor salsuginis species 269261 1 0 359 414 0 genus 2 265570 species Sulfurovum lithotrophicum 1 206403 193 0 0 221 no rank 2646778 1 species Sulfurovum sp. NBC37-1 1 387093 0 221 4 235899 order 461 0 family 1 2795691 0 141 141 0 269258 1 genus 141 0 no rank 1 2624044 141 0 1 387092 species Nitratiruptor sp. SB155-2 1 3 224467 family Nautiliaceae 1 0 320 Nautilia genus 191291 1 2 2 0 319 244787 1 Nautilia profundicola species 0 317 48086 0 106 class Deltaproteobacteria 1 124 28221 167 order Myxococcales 1 38 29 15897 0 0 890 suborder 3 224462 3 1 3 224464 family Kofleriaceae 890 0 14 2 1 162027 genus Haliangium 887 0 80816 1 Haliangium ochraceum species 873 0 0 2798 80812 8 suborder 0 493 family Sandaracinaceae 1 3 1055686 8 5 Sandaracinus genus 1055688 1 2 485 0 Sandaracinus amylolyticus species 927083 1 480 0 2305 0 10 family Polyangiaceae 1 5 49 0 544 genus Chondromyces 2 1 50 5 539 0 52 1 Chondromyces crocatus species 1751 0 12 39643 2 1 Sorangium genus 0 1739 Sorangium cellulosum species 56 1 0 12042 80811 26 suborder 0 3736 family Archangiaceae 1 9 39 76 0 747 Melittangium genus 44 2 1 8 739 0 1 83453 species Melittangium boletus 0 972 2 1 47 genus Archangium 1 971 0 Archangium gephyra species 48 1 1 2 42 genus Cystobacter 7 0 1093 0 1086 1 43 species Cystobacter fuscus Stigmatella genus 40 2 1 4 0 848 0 844 41 1 Stigmatella aurantiaca species 1524213 1 3 Vulgatibacteraceae family 5 0 384 3 2 1 1524214 genus Vulgatibacter 379 0 1 1391653 species Vulgatibacter incomptus 376 0 38 1 5 1524215 family Anaeromyxobacteraceae 2174 0 2136 0 54 Anaeromyxobacter genus 161492 4 1 161493 1 Anaeromyxobacter dehalogenans species 0 1065 0 1017 2620896 2 no rank 447217 1 Anaeromyxobacter sp. K species 613 0 Anaeromyxobacter sp. Fw109-5 species 404589 1 0 404 42 9 1 31 family Myxococcaceae 5748 0 genus Corallococcus 1 3 83461 23 0 1779 184914 1 Corallococcus coralloides species 0 965 1 35 species Myxococcus macrosporus 791 0 32 5 1 Myxococcus genus 152 0 3927 1297742 1 Myxococcus hansupus species 0 718 698 0 Myxococcus xanthus species 34 1 738 0 Myxococcus stipitatus species 83455 1 species Myxococcus fulvus 1 33 0 1621 0 410 order 5 213113 family Desulfurellaceae 1 5 117942 1 0 410 0 219 genus Hippea 1 2 84404 2 0 217 84405 1 Hippea maritima species Desulfurella genus 33001 1 2 2 0 190 33002 1 Desulfurella acetivorans species 188 0 0 1207 213462 1 10 Syntrophobacterales order 6 4 3 1 213465 family Syntrophobacteraceae 309 0 Syntrophobacter genus 29526 1 2 4 0 305 0 301 1 119484 species Syntrophobacter fumaroxidans 0 892 family Syntrophaceae 1 6 213468 6 300 0 genus 1 60892 species Desulfobacca acetoxidans 1 60893 0 300 294 0 2 1 2 2357 genus Desulfomonile 292 0 2358 1 Desulfomonile tiedjei species genus Syntrophus 1 2 43773 1 0 292 0 291 1 316277 species Syntrophus aciditrophicus 0 4224 Desulfobacterales order 213118 17 1 35 0 2494 9 1 213119 family Desulfobacteraceae 6 genus 1 28222 0 433 0 433 28223 1 Desulfobacula toluolica species 0 722 Desulfatibacillum genus 218207 2 1 5 species Desulfatibacillum alkenivorans 1 259354 0 717 414 0 1 1 2 2295 genus Desulfobacterium 413 0 species Desulfobacterium autotrophicum 1 2296 0 919 3 1 896 genus Desulfococcus 6 0 493 1 181663 species Desulfococcus oleovorans Desulfococcus multivorans species 897 1 0 420 0 1695 213121 1 7 Desulfobulbaceae family 5 254 0 53318 1 genus 254 0 65555 1 Desulfocapsa sulfexigens species Desulfotalea genus 109168 1 2 2 0 261 259 0 1 84980 species Desulfotalea psychrophila 475 0 1 893 genus 0 475 Desulfobulbus sp. ORNL species 1986146 1 5 genus Desulfurivibrio 2 1 427922 700 0 0 695 1 427923 species Desulfurivibrio alkaliphilus 213115 1 25 Desulfovibrionales order 100 0 15528 1097 0 29 4 1 213116 family Desulfomicrobiaceae 0 1068 3 1 898 genus Desulfomicrobium 3 species Desulfomicrobium baculatum 1 899 603 0 species Desulfomicrobium orale 1 132132 462 0 0 14116 1 17 194924 family Desulfovibrionaceae 90 genus 2582840 1 0 758 Desulfovibrio africanus species 873 1 0 758 Pseudodesulfovibrio genus 2035811 4 1 5 0 2086 57320 1 Pseudodesulfovibrio profundus species 0 460 702 0 182210 1 Pseudodesulfovibrio aespoeensis species 1 1716143 species Pseudodesulfovibrio indicus 919 0 0 10181 872 9 1 Desulfovibrio genus 80 0 1845 1 901 species Desulfovibrio piger 1725232 1 Candidatus Desulfovibrio trichonymphae species 373 0 Desulfovibrio fairfieldensis species 44742 1 1513 0 Desulfovibrio desulfuricans species 876 1 1852 0 no rank 1 2593640 600 0 species Desulfovibrio sp. G11 1 631220 0 600 Desulfovibrio alaskensis species 58180 1 584 0 0 956 species Desulfovibrio magneticus 1 184917 0 2378 species Desulfovibrio vulgaris 1 881 731 0 2794998 1 genus Desulfovibrio salexigens species 880 1 731 0 41707 1 genus 270 0 Lawsonia intracellularis species 29546 1 270 0 213117 1 3 Desulfohalobiaceae family 2 0 215 0 213 45662 2 1 Desulfohalobium genus 7 species Desulfohalobium retbaense 1 45663 206 0 Desulfarculales order 453227 1 4 7 0 744 737 0 11 1 3 453228 family Desulfarculaceae 5 genus Desulfarculus 2 1 453229 726 0 Desulfarculus baarsii species 453230 1 721 0 136 Desulfuromonadales order 69541 1 24 9970 0 0 3293 Desulfuromonadaceae family 213421 9 1 52 genus Desulfuromonas 3 1 890 9 0 1236 1603606 1 Desulfuromonas soudanensis species 0 606 621 0 no rank 1 2614637 621 0 Desulfuromonas sp. DDH964 species 1823759 1 2 genus Pelobacter 1 5 18 2005 0 406 0 Pelobacter acetylenicus species 29542 1 0 727 29543 1 Pelobacter propionicus species 1 2620299 no rank 0 440 1 1842532 species Pelobacter sp. SFB93 0 440 0 430 species Pelobacter carbinolicus 1 19 33 213422 1 14 Geobacteraceae family 6541 0 5934 0 110 28231 1 11 Geobacter genus Geobacter metallireducens species 28232 1 0 530 517 0 1 1340425 species Geobacter anodireducens 0 666 species Geobacter bemidjiensis 1 225194 species Geobacter pickeringii 1 345632 0 564 344 0 Geobacter daltonii species 1203471 1 species Geobacter uraniireducens 1 351604 649 0 2627627 2 no rank 1368 0 821 0 1 443143 species Geobacter sp. M18 547 0 1 443144 species Geobacter sp. M21 1 35554 species Geobacter sulfurreducens 556 0 Geobacter lovleyi species 313985 1 630 0 574 0 1 1 2 392332 genus Geoalkalibacter 573 0 species Geoalkalibacter subterraneus 1 483547 0 357446 class Gammaproteobacteria 1 850 1236 568 984 0 no rank 2 33811 species endosymbiont of unidentified scaly snail isolate Monju 1 1248727 0 439 0 545 species gamma proteobacterium HdN1 1 83406 0 15031 Aeromonadales order 135624 1 27 86 0 14945 family Aeromonadaceae 1 26 84642 122 12881 0 710 18 1 642 genus Aeromonas 0 1396 Aeromonas veronii species 654 1 1 558964 species Aeromonas aquatica 534 0 651 1 Aeromonas media species 388 0 species Aeromonas rivipollensis 1 948519 469 0 0 4325 no rank 8 257493 1920107 1 Aeromonas sp. ASNIH7 species 0 553 577 0 1758179 1 Aeromonas sp. ASNIH5 species 427 0 1 1636608 species Aeromonas sp. ASNIH3 646 0 Aeromonas sp. CU5 species 2033033 1 358 0 species Aeromonas sp. ASNIH1 1 1636606 species Aeromonas sp. ASNIH2 1 1636607 0 468 1 2033032 species Aeromonas sp. CA23 0 844 452 0 species Aeromonas sp. ASNIH4 1 1636609 1 648 species Aeromonas caviae 0 387 0 729 species Aeromonas salmonicida 1 645 species Aeromonas dhakensis 1 196024 0 487 species Aeromonas schubertii 1 652 0 459 2997 0 species Aeromonas hydrophila 1 644 0 305 Tolumonas genus 43947 1 2 5 Tolumonas auensis species 43948 1 300 0 1 129577 genus 634 0 no rank 2636315 1 0 634 1 511062 species Oceanimonas sp. GK1 0 634 2 225143 genus 344 0 species Oceanisphaera sp. AMac2203 1 1903694 202 0 1416627 1 Oceanisphaera profunda species 142 0 1 genus Zobellella 1 2 347533 659 0 Zobellella denitrificans species 347534 1 0 658 Xanthomonadales order 135614 1 53 156 0 23488 14 1 1775411 family Rhodanobacteraceae 59 0 3984 1 Frateuria genus 70411 2 1 404 0 0 403 81475 1 Frateuria aurantia species 354 0 4 Luteibacter genus 242605 2 1 242606 1 Luteibacter rhizovicinus species 350 0 5 Rhodanobacter genus 75309 1 2 578 0 Rhodanobacter denitrificans species 666685 1 573 0 1 2233801 genus 302 0 302 0 species Xanthomonadales bacterium D13 1 2021234 24 Dyella genus 231454 4 1 1834 0 596 0 Dyella thiooxydans species 445710 1 species Dyella japonica 1 231455 0 796 species Dyella jiangningensis 1 1379159 0 418 10 Dokdonella genus 323413 1 2 453 0 443 0 species Dokdonella koreensis 1 323415 19348 0 211 family Xanthomonadaceae 1 38 32033 40323 1 9 Stenotrophomonas genus 129 0 6880 462 0 1 216778 species Stenotrophomonas rhizophila no rank 4 196198 0 1731 0 570 1 1904944 species Stenotrophomonas sp. LM091 434 0 1 1827305 species Stenotrophomonas sp. MYb57 311 0 1793721 1 Stenotrophomonas sp. KCTC 12332 species Stenotrophomonas sp. WZN-1 species 2005046 1 0 416 840 0 species Stenotrophomonas acidaminiphila 1 128780 0 321 species Stenotrophomonas nitritireducens 1 83617 3397 0 995085 1 species group Stenotrophomonas maltophilia species 40324 1 0 3397 338 17 1 Xanthomonas genus 396 0 7841 species Xanthomonas axonopodis 1 53413 0 309 Xanthomonas vesicatoria species 56460 1 518 0 Xanthomonas translucens species 343 1 652 0 0 330 1 56454 species Xanthomonas hortorum 0 380 1 442694 species Xanthomonas perforans Xanthomonas alfalfae species 366650 1 317 0 270 0 56459 1 Xanthomonas vasicola species 1 347 species Xanthomonas oryzae 0 557 456327 1 Xanthomonas euvesicatoria species 0 295 684 0 Xanthomonas sacchari species 56458 1 0 1516 2 643453 species group Xanthomonas citri species 346 1 1115 0 366648 1 Xanthomonas fuscans species 0 401 species Xanthomonas albilineans 1 29447 0 145 1 1985254 species Xanthomonas phaseoli 305 0 990 0 1 339 species Xanthomonas campestris 0 177 species Xanthomonas fragariae 1 48664 Lysobacter genus 68 5 1 27 0 2470 Lysobacter antibioticus species 84531 1 0 595 species Lysobacter gummosus 1 262324 0 581 0 690 Lysobacter capsici species 435897 1 0 577 69 1 Lysobacter enzymogenes species 0 325 genus 1 2370 1 2371 species Xylella fastidiosa 325 0 0 1339 genus Pseudoxanthomonas 1 3 83618 12 861 0 1 314722 species Pseudoxanthomonas suwonensis species Pseudoxanthomonas spadix 1 415229 466 0 genus Luteimonas 2 1 83614 1 0 282 species Luteimonas sp. 100111 1 2006110 0 281 120 0 order 135615 2 120 0 868 2 family 0 120 Dichelobacter genus 869 2 1 5 0 115 870 1 Dichelobacter nodosus species 2750 0 5 Methylococcales order 135618 1 11 2745 0 59 family Methylococcaceae 1 10 403 20 416 5 1 Methylomonas genus 1645 0 Methylomonas methanica species 421 1 420 0 Methylomonas koyamae species 702114 1 0 373 no rank 2608980 1 0 520 0 520 Methylomonas sp. DH-1 species 1727196 1 species Methylomonas denitrificans 1 1538553 312 0 0 374 413 2 1 Methylococcus genus 5 369 0 1 414 species Methylococcus capsulatus 1 39773 genus 0 331 331 0 species Methylomicrobium alcaliphilum 1 271065 336 0 genus 1 762296 Methylovulum psychrotolerans species 1704499 1 0 336 Cellvibrionales order 1706369 1 25 13 0 4644 5 Microbulbiferaceae family 1706373 1 5 1188 0 4 genus Microbulbifer 4 1 48073 1183 0 426 0 Microbulbifer agarilyticus species 260552 1 317 0 species Microbulbifer thermotolerans 1 252514 Microbulbifer aggregans species 1769779 1 0 436 4 Halieaceae family 1706372 1 4 587 0 10 1 3 1217416 genus Halioglobus 583 0 0 245 species Halioglobus pacificus 1 930806 0 328 species Halioglobus japonicus 1 930805 0 2307 1706371 1 10 Cellvibrionaceae family 5 0 228 genus 2036021 1 Agarilytica rhodophyticola species 1737490 1 0 228 441 0 9 Simiduia genus 447467 1 2 Simiduia agarivorans species 447471 1 0 432 0 1109 Cellvibrio genus 10 4 1 4 1 155077 species Cellvibrio japonicus 346 0 759 0 no rank 2 2624793 461 0 Cellvibrio sp. PSBB006 species 1987723 1 298 0 species Cellvibrio sp. PSBB023 1 1945512 genus 1 316625 0 320 0 320 1 86304 species Saccharophagus degradans 1 2425 genus 0 204 204 0 2426 1 Teredinibacter turnerae species Spongiibacteraceae family 1706375 1 5 21 0 549 0 169 2 1 1434050 genus Zhongshania 1 168 0 Zhongshania aliphaticivorans species 1470434 1 genus 1 1084558 178 0 716816 1 Oceanicoccus sagamiensis species 178 0 181 0 630749 1 genus 0 181 no rank 2631504 1 1620392 1 Spongiibacter sp. IMCC21906 species 0 181 0 2739 Legionellales order 118969 17 1 1 family 118968 3 313 0 no rank 1 134284 0 44 0 44 Coxiella-like endosymbiont species 1592897 1 0 269 genus 776 2 1 777 species Coxiella burnetii 248 0 0 21 2676648 1 no rank 1 325775 species Coxiella endosymbiont of Amblyomma americanum 0 21 2425 0 family 444 13 465 1 genus 70 0 Tatlockia micdadei species 451 1 70 0 2355 0 16 445 12 1 Legionella genus 1 45067 species Legionella lansingensis 0 220 449 1 Legionella hackeliae species 251 0 776 0 1 446 species Legionella pneumophila 0 142 1 450 species Legionella longbeachae 0 111 1 96230 species Legionella fallonii 0 235 1867846 1 Legionella clemsonensis species 1 452 species Legionella spiritensis 0 173 species Legionella endosymbiont of Polyplax serrata 1 2005262 37 0 171 0 1 29423 species Legionella oakridgensis Legionella sainthelensi species 28087 1 0 73 species Legionella waltersii 1 66969 150 0 177 1 64 135619 order Oceanospirillales 13504 0 462 0 5 family Kangiellaceae 1 6 1920240 1 261963 1 5 Kangiella genus 457 0 species Kangiella geojedonensis 1 914150 58 0 0 155 Kangiella profundi species 1561924 1 0 110 261964 1 Kangiella koreensis species 133 0 Kangiella sediminilitoris species 1144748 1 5 Saccharospirillaceae family 255527 1 4 731 0 230 0 230494 1 genus 230 0 1336806 1 Reinekea forsetii species 496 0 2 genus Gynuella 2 1 1445504 494 0 species Gynuella sunshinyii 1 1445505 17 224372 1 8 Alcanivoracaceae family 2097 0 18 Alcanivorax genus 59753 1 6 1743 0 Alcanivorax borkumensis species 59754 1 131 0 113 0 2638842 1 no rank Alcanivorax sp. NBRC 101098 species 1113728 1 113 0 0 421 species Alcanivorax xenomutans 1 1094342 0 520 species Alcanivorax pacificus 1 1306787 0 540 Alcanivorax dieselolei species 285091 1 genus 2025617 1 337 0 0 337 Ketobacter alkanivorans species 1917421 1 1 224379 1 2 Hahellaceae family 287 0 286 0 genus 158481 1 species Hahella chejuensis 1 158327 0 286 220 0 3 Oleiphilaceae family 191033 2 1 0 217 genus 141450 1 217 0 species Oleiphilus messinensis 1 141451 7625 0 121 28256 1 30 Halomonadaceae family 7 genus Salinicola 1 2 404432 565 0 558 0 Salinicola tamaricis species 1771309 1 no rank 3 114403 0 75 genus 1 235572 19 0 0 19 Candidatus Portiera aleyrodidarum species 91844 1 48 0 genus 1495768 1 0 48 1 1495769 species Candidatus Evansia muelleri 0 8 1 114185 genus 8 0 Candidatus Carsonella ruddii species 114186 1 Halotalea genus 376488 2 1 8 0 380 0 372 species Halotalea alkalilenta 1 376489 3 2 1 42054 genus Chromohalobacter 342 0 species Chromohalobacter salexigens 1 158080 339 0 591 0 10 1 2 204286 genus Cobetia 0 581 species Cobetia marina 1 28258 4874 0 49 2745 15 1 Halomonas genus no rank 2609666 8 2652 0 374 0 Halomonas sp. SF2003 species 2136172 1 species Halomonas sp. GT 1 1971364 207 0 1 1504981 species Halomonas sp. KO116 352 0 1962264 1 Halomonas sp. 'Soap Lake #7' species 0 335 1 1118153 species Halomonas sp. GFAJ-1 138 0 0 399 1610576 1 Halomonas sp. R57-5 species species Halomonas sp. 'Soap Lake #6' 1 1949203 335 0 Halomonas sp. 1513 species 1883416 1 512 0 0 501 Halomonas hydrothermalis species 115561 1 475662 1 Halomonas beimenensis species 0 415 0 151 1 213554 species Halomonas campaniensis Halomonas aestuarii species 1897729 1 463 0 0 438 507626 1 Halomonas chromatireducens species 0 205 Halomonas huangheensis species 1178482 1 677 0 12 3 1 504090 genus Kushneria 157779 1 Kushneria marisflavi species 0 287 0 378 1 698828 species Kushneria konosiri 26 Oceanospirillaceae family 135620 11 1 1905 0 362 0 3 genus Bacterioplanes 2 1 1537406 359 0 Bacterioplanes sanyensis species 1249553 1 48075 1 2 Marinobacterium genus 3 0 579 576 0 1821621 1 Marinobacterium aestuarii species genus 187492 1 193 0 0 193 Thalassolituus oleivorans species 187493 1 genus 188907 1 174 0 1 188908 species Oleispira antarctica 174 0 4 1 28253 genus Marinomonas 2 0 571 229 0 Marinomonas posidonica species 936476 1 196814 1 no rank 170 0 species Marinomonas sp. MWYL1 1 400668 0 170 Marinomonas mediterranea species 119864 1 0 170 91347 1 239 Enterobacterales order 435 0 157566 1903410 1 20 Pectobacteriaceae family 31 0 8742 492 0 9 Brenneria genus 71655 1 2 Brenneria goodwinii species 1109412 1 0 483 204037 1 6 Dickeya genus 90 0 3415 523 0 204039 1 Dickeya dianthicola species 204038 1 Dickeya dadantii species 465 0 Dickeya zeae species 204042 1 733 0 1113 0 Dickeya solani species 1089444 1 0 491 species Dickeya fangzhongdai 1 1778540 0 1145 Sodalis genus 84565 1 5 9 234 0 1 63612 species Sodalis glossinidius species Candidatus Sodalis pierantonius 1 1486991 0 397 species Sodalis endosymbiont of Henestaris halophilus 1 1929246 54 0 0 451 1239307 1 Sodalis praecaptivus species 80 Pectobacterium genus 122277 6 1 3659 0 0 1796 Pectobacterium carotovorum species 554 1 0 453 1 1905730 species Pectobacterium parmentieri 0 576 1 2042057 species Pectobacterium polaris 55208 1 Pectobacterium wasabiae species 381 0 Pectobacterium atrosepticum species 29471 1 373 0 8 Hafniaceae family 1903412 1 14 4511 0 0 3205 1 8 635 genus Edwardsiella 138 no rank 2676541 2 0 861 475 0 species Edwardsiella sp. EA181011 1 1578828 1 1650654 species Edwardsiella sp. LADL05-105 386 0 species Edwardsiella hoshinae 1 93378 366 0 Edwardsiella anguillarum species 1821960 1 0 371 Edwardsiella ictaluri species 67780 1 271 0 0 448 species Edwardsiella piscicida 1 1263550 species Edwardsiella tarda 1 636 0 750 967 0 14 Hafnia genus 568 1 3 0 257 no rank 1 2621980 0 257 species Hafnia sp. CBA7124 1 1848580 1 569 species Hafnia alvei 0 696 331 0 14 1 2 82982 genus Obesumbacterium 317 0 1 82983 species Obesumbacterium proteus 2 1903416 family 0 512 512 0 1 genus Pragia 2 1 82984 82985 1 Pragia fontium species 0 511 family Morganellaceae 21 1 1903414 15 0 4778 20 genus Xenorhabdus 1 6 626 1312 0 1 351679 species Xenorhabdus hominickii 0 187 Xenorhabdus doucetiae species 351671 1 275 0 40576 1 Xenorhabdus bovienii species 0 362 214 0 40577 1 Xenorhabdus poinarii species 1 628 species Xenorhabdus nematophila 254 0 637 1 genus 0 48 0 48 species Arsenophonus symbiont of Lipoptena fortisetosa 1 634113 17 1 2 581 genus Morganella 812 0 0 795 species Morganella morganii 1 582 0 880 genus Photorhabdus 4 1 29487 9 29488 1 Photorhabdus luminescens species 297 0 291112 1 Photorhabdus asymbiotica species 388 0 186 0 Photorhabdus temperata species 574560 1 0 782 genus Providencia 4 1 586 1 274 0 1 126385 species Providencia alcalifaciens Providencia rettgeri species 587 1 218 0 1 588 species Providencia stuartii 289 0 23 583 1 3 Proteus genus 929 0 Proteus mirabilis species 584 1 694 0 0 212 Proteus vulgaris species 585 1 10099 0 45 Erwiniaceae family 1903409 1 26 1090 0 genus 2 2100764 Pantoea gaviniae species 665914 1 0 472 618 0 1 665913 species Pantoea calida 84 0 1 51228 genus 0 84 51229 1 Wigglesworthia glossinidia species 740 0 genus 1 32199 740 0 9 1 Buchnera aphidicola species 82986 1 2 Tatumella genus 5 0 372 0 367 Tatumella citrea species 53336 1 genus Pantoea 1 11 53335 213 0 5350 1891675 1 Pantoea alhagi species 302 0 134 0 1235990 1 Candidatus Pantoea carbekii species 1 66269 species Pantoea stewartii 475 0 0 354 1076550 1 Pantoea rwandensis species 1 553 species Pantoea ananatis 544 0 1654067 1 species group 677 0 Pantoea agglomerans species 549 1 0 677 1728 0 no rank 3 2630326 1 1484157 species Pantoea sp. PSNIH2 0 649 612 0 592316 1 Pantoea sp. At-9b species 1 1484158 species Pantoea sp. PSNIH1 467 0 923 0 470934 1 Pantoea vagans species 8 1 551 genus Erwinia 86 0 2418 394 0 1619313 1 Erwinia gerundensis species 296 0 no rank 2622719 1 species Erwinia sp. Ejp617 1 215689 0 296 340 0 Erwinia amylovora species 552 1 214 0 79967 1 Erwinia pyrifoliae species 0 575 1 182337 species Erwinia billingiae 1922217 1 Candidatus Erwinia sp. ErCipseudotaxifoliae species 0 50 species Erwinia tasmaniensis 1 338565 0 463 Enterobacteriaceae family 543 1 114 506 0 109491 Shigella genus 620 1 4 53 0 1384 622 1 Shigella dysenteriae species 527 0 1 623 species Shigella flexneri 0 335 469 0 2629414 1 no rank 0 469 Shigella sp. PAMC 28760 species 1813821 1 19 1330547 1 5 Kosakonia genus 2736 0 species Kosakonia oryzae 1 497725 0 567 Kosakonia sacchari species 1158459 1 546 0 0 914 1 283686 species Kosakonia radicincitans 0 690 species Kosakonia cowanii 1 208223 0 3223 5 36866 no rank 410 0 2066051 1 Enterobacteriaceae bacterium ENNIH1 species species Enterobacteriaceae bacterium strain FGI 57 1 693444 1238 0 Plautia stali symbiont species 891974 1 445 0 1 1920109 species Enterobacteriaceae bacterium ENNIH2 0 572 558 0 Enterobacteriaceae bacterium ENNIH3 species 1920128 1 401618 1 genus 0 60 Candidatus Riesia pediculicola species 401619 1 60 0 69 1 8 413496 genus Cronobacter 3607 0 1 413501 species Cronobacter muytjensii 682 0 0 415 413497 1 Cronobacter dublinensis species 829 0 species Cronobacter sakazakii 1 28141 species Cronobacter universalis 1 535744 0 390 species Cronobacter malonaticus 1 413503 459 0 species Cronobacter condimenti 1 1163710 0 367 396 0 species Cronobacter turicensis 1 413502 11699 0 313 544 1 14 Citrobacter genus 2644389 2 no rank 0 992 1920110 1 Citrobacter sp. CFNIH10 species 0 526 Citrobacter sp. FDAARGOS_156 species 1702170 1 0 466 1 67825 species Citrobacter rodentium 717 0 0 855 545 1 Citrobacter koseri species 1495 0 1 35703 species Citrobacter amalonaticus 567 0 67824 1 Citrobacter farmeri species 6760 0 7 1344959 species group 0 552 2077147 1 Citrobacter freundii complex sp. CFNIH3 species species Citrobacter freundii complex sp. CFNIH2 1 2066049 454 0 0 485 2077149 1 Citrobacter freundii complex sp. CFNIH9 species 1 67827 species Citrobacter werkmanii 1056 0 Citrobacter braakii species 57706 1 0 995 546 1 Citrobacter freundii species 0 2577 0 641 species Citrobacter freundii complex sp. CFNIH4 1 2077148 0 10190 Escherichia genus 561 5 1 53 1 562 species Escherichia coli 0 8528 564 1 Escherichia fergusonii species 461 0 species Escherichia marmotae 1 1499973 0 413 735 0 1 208962 species Escherichia albertii genus Salmonella 1 3 590 7 0 4444 3699 0 1 28901 species Salmonella enterica 0 738 Salmonella bongori species 54736 1 0 43067 genus Enterobacter 1 22 547 834 0 37029 species group 12 354276 3 2757714 no rank 0 1381 Enterobacter cloacae complex sp. ECNIH7 species 1915310 1 0 492 1 2027919 species Enterobacter cloacae complex bacterium 416 0 2077137 1 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 species 0 473 550 1 Enterobacter cloacae species 0 17621 0 1686 61645 1 Enterobacter asburiae species species Enterobacter ludwigii 1 299767 495 0 449 0 69218 1 Enterobacter cancerogenus species Enterobacter kobei species 208224 1 0 1080 0 13884 species Enterobacter hormaechei 3 1 158836 6200 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 1 1812934 6710 0 1296536 1 Enterobacter xiangfangensis subspecies 974 0 species Enterobacter cloacae complex 'Hoffmann cluster IV' 1 1812935 433 0 0 5204 9 2608935 no rank Enterobacter sp. E20 species 1560339 1 297 0 Enterobacter sp. HK169 species 1868135 1 0 371 species Enterobacter sp. 638 1 399742 363 0 1 2051905 species Enterobacter sp. CRENT-193 1118 0 0 675 1914861 1 Enterobacter sp. SA187 species 1 1692238 species Enterobacter sp. FY-07 459 0 1166130 1 Enterobacter sp. R4-368 species 534 0 368 0 species Enterobacter sp. Crenshaw 1 1977566 Enterobacter sp. ODB01 species 1827481 1 1019 0 579 1 genus 396 0 396 0 Kluyvera intermedia species 61648 1 genus Pluralibacter 1 3 1330546 12 0 2172 1265 0 61647 1 Pluralibacter gergoviae species 0 895 [Enterobacter] lignolyticus species 1334193 1 0 916 16 191675 no rank clade 84563 16 916 0 genus 1906661 1 0 112 0 112 species Candidatus Gullanella endobia 1 1070130 87 0 genus 1 1906657 1778262 1 Candidatus Doolittlea endobia species 87 0 199 0 146507 3 clade 68 0 species secondary endosymbiont of Heteropsylla cubana 1 134287 1 568987 genus 0 63 0 63 species Candidatus Hamiltonella defensa 1 138072 1 1199245 species secondary endosymbiont of Ctenarytaina eucalypti 0 68 0 341 84564 6 clade 0 341 genus 203804 6 0 71 203907 1 Candidatus Blochmannia floridanus species 0 48 Candidatus Blochmannia chromaiodes species 251542 1 1 101534 species Candidatus Blochmannia pennsylvanicus 0 50 120 0 711328 2 no rank species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1 1505597 70 0 50 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 1505596 1 52 0 species Candidatus Blochmannia vafer 1 251535 0 23 genus 1 1906660 23 0 1778264 1 Candidatus Mikella endobia species 31 0 clade 1 199891 0 31 1835721 1 secondary endosymbiont of Trabutina mannipara species genus 1682492 1 78 0 0 78 1410383 1 Candidatus Tachikawaea gelatinosa species 2 Candidatus Hoaglandella genus 1906659 1 2 45 0 1 1778263 species Candidatus Hoaglandella endobia 43 0 1 409304 genus 0 30 1 168169 species Candidatus Ishikawaella capsulata 30 0 15712 0 514 genus Klebsiella 1 10 570 1531 0 1 244366 species Klebsiella variicola 0 2001 2 2608929 no rank 0 847 Klebsiella sp. LTGPAF-6F species 1905288 1 0 1154 1 1934254 species Klebsiella sp. M5al 899 0 species Klebsiella quasipneumoniae 1 1463165 0 1599 Klebsiella michiganensis species 1134687 1 1 2026240 species Klebsiella quasivariicola 0 667 1 548 species Klebsiella aerogenes 0 1262 4088 0 1 573 species Klebsiella pneumoniae 0 3151 571 1 Klebsiella oxytoca species 0 540 1 1335483 genus species Shimwellia blattae 1 563 540 0 1567 0 7 158483 2 1 Cedecea genus 158822 1 Cedecea neteri species 0 1560 0 2135 4 1 83654 genus Leclercia 49 species Leclercia adecarboxylata 1 83655 0 671 1415 0 2627398 2 no rank species Leclercia sp. LSNIH1 1 1920114 0 758 Leclercia sp. LSNIH3 species 1920116 1 0 657 0 13 1 1048757 genus 13 0 Candidatus Moranella endobia species 1048758 1 14 1 4 1330545 genus Lelliottia 1979 0 1 61646 species Lelliottia amnigena 870 0 0 433 Lelliottia jeotgali species 1907578 1 1 69220 species Lelliottia nimipressuralis 662 0 3115 0 21 genus Raoultella 1 3 160674 2157 0 Raoultella ornithinolytica species 54291 1 937 0 species Raoultella planticola 1 575 18487 0 103 1903411 39 1 Yersiniaceae family 412 1 16 613 genus Serratia 12545 0 1 615 species Serratia marcescens 2786 0 0 281 Serratia proteamaculans species 28151 1 1 47917 species Serratia fonticola 1133 0 0 716 species Serratia rubidaea 1 61652 0 4700 no rank 2647522 8 411 0 Serratia sp. AS12 species 768490 1 671990 1 Serratia sp. FGI94 species 785 0 104623 1 Serratia sp. ATCC 39006 species 504 0 Serratia sp. FS14 species 1327989 1 0 619 0 874 2033438 1 Serratia sp. MYb239 species 768493 1 Serratia sp. AS13 species 411 0 544 0 species Serratia sp. SSNIH1 1 1758196 1 488142 species Serratia sp. SCBI 552 0 species Serratia plymuthica 1 82996 0 1292 614 1 Serratia liquefaciens species 0 581 61651 1 Serratia ficaria species 0 644 1 1 2 1745211 genus Chania 433 0 432 0 Chania multitudinisentens species 1639108 1 0 467 genus Gibbsiella 1 2 929812 5 species Gibbsiella quercinecans 1 929813 462 0 1565532 1 Rouxiella genus 0 14 0 1414 34037 4 1 Rahnella genus 57 913 0 no rank 2635087 2 1805933 1 Rouxiella sp. ERMR1:05 species 475 0 741091 1 Rahnella sp. Y9602 species 438 0 species Rahnella aquatilis 1 34038 444 0 0 3511 629 13 1 Yersinia genus 70 0 771 species Yersinia enterocolitica 1 630 species group 1649845 3 632 0 633 1 Yersinia pseudotuberculosis species 0 288 Yersinia similis species 367190 1 0 175 0 169 632 1 Yersinia pestis species 263819 1 Yersinia aleksiciae species 172 0 1 2653513 no rank 0 108 108 0 Yersinia sp. FDAARGOS_228 species 1839800 1 species Yersinia frederiksenii 1 29484 0 735 29483 1 Yersinia aldovae species 180 0 Yersinia kristensenii species 28152 1 262 0 1 29486 species Yersinia ruckeri 0 261 species Yersinia rohdei 1 29485 205 0 0 115 1 631 species Yersinia intermedia 0 511 2 451511 no rank 0 511 genus Plesiomonas 2 1 702 7 504 0 1 703 species Plesiomonas shigelloides Chromatiales order 135613 1 50 142 0 9330 451214 2 no rank 500 0 500 0 1 genus Thiohalobacter 2 1 1273155 1 585455 species Thiohalobacter thiocyanaticus 0 499 449719 1 3 Granulosicoccaceae family 3 0 443 3 genus Granulosicoccus 2 1 437504 440 0 437 0 1 437505 species Granulosicoccus antarcticus 0 3851 72276 1 18 Ectothiorhodospiraceae family 26 genus Thioalkalivibrio 1 6 106633 10 0 1861 571 0 1033854 1 Thioalkalivibrio sulfidiphilus species 0 467 1 106634 species Thioalkalivibrio versutus Thioalkalivibrio nitratireducens species 186931 1 242 0 2621013 1 no rank 0 282 1 396595 species Thioalkalivibrio sp. K90mix 282 0 0 289 species Thioalkalivibrio paradoxus 1 108010 0 351 Spiribacter genus 1335745 1 3 5 Spiribacter curvatus species 1335757 1 230 0 1 1335746 species Spiribacter salinus 0 116 0 378 1 2 1765964 genus Acidihalobacter 3 1 160660 species Acidihalobacter prosperus 0 375 Ectothiorhodospira genus 1051 2 1 1 0 438 0 437 no rank 1 2684909 0 437 1442136 1 Ectothiorhodospira sp. BSL-9 species Alkalilimnicola genus 133193 1 2 4 0 401 397 0 species Alkalilimnicola ehrlichii 1 351052 1 2 85108 genus Halorhodospira 1 0 396 1 1053 species Halorhodospira halophila 395 0 Woeseiaceae family 1738654 1 3 1 0 181 180 0 8 Woeseia genus 1738655 1 2 172 0 1548547 1 Woeseia oceani species 87 1046 1 17 Chromatiaceae family 3476 0 0 442 1 2 13724 genus Thiocystis 8 0 434 species Thiocystis violascens 1 73141 1980513 1 2 Candidatus Nitrosoglobus genus 1 0 123 122 0 1630141 1 Candidatus Nitrosoglobus terrae species 4 156885 1 2 Thioflavicoccus genus 274 0 270 0 1 80679 species Thioflavicoccus mobilis 766 0 genus 53392 1 1 1166950 species Candidatus Thiodictyon syntrophicum 766 0 0 475 Marichromatium genus 85076 2 1 15 37487 1 Marichromatium purpuratum species 460 0 422 0 no rank 82569 1 0 422 1 1978339 species Chromatiaceae bacterium 2141T.STBD.0c.01a 0 572 Allochromatium genus 85072 1 2 3 1 1049 species Allochromatium vinosum 569 0 315 0 1 genus Nitrosococcus 4 1 1227 80 0 species Nitrosococcus oceani 1 1229 Nitrosococcus halophilus species 133539 1 0 130 104 0 Nitrosococcus watsonii species 473531 1 1 4 255526 family Halothiobacillaceae 5 0 415 Halothiobacillus genus 109262 1 3 11 0 410 1 927 species Halothiobacillus neapolitanus 0 126 0 273 no rank 2636392 1 1860122 1 Halothiobacillus sp. LS2 species 273 0 1676141 2 family 322 0 genus Wenzhouxiangella 1 2 1676142 3 0 322 0 319 1 1579979 species Wenzhouxiangella marina 24 Acidiferrobacterales order 1692040 1 6 690 0 30 family Acidiferrobacteraceae 1 5 1692041 666 0 254 0 6 1692042 1 2 Sulfurifustis genus 248 0 species Sulfurifustis variabilis 1 1675686 1744881 1 2 Sulfuricaulis genus 1 0 382 381 0 1620215 1 Sulfuricaulis limicola species 2 135623 1 43 Vibrionales order 11395 0 641 42 1 Vibrionaceae family 48 0 11393 511678 1 4 Aliivibrio genus 7 0 693 196 0 Aliivibrio salmonicida species 40269 1 192 0 80852 1 Aliivibrio wodanis species 298 0 Aliivibrio fischeri species 668 1 146 0 1 2042066 genus 0 146 1 1755811 species Paraphotobacterium marinum 1081 0 16 1 4 657 genus Photobacterium 38293 1 Photobacterium damselae species 0 432 Photobacterium gaetbulicola species 1295392 1 402 0 0 231 74109 1 Photobacterium profundum species 204 0 2 246861 1 2 Grimontia genus 0 202 673 1 Grimontia hollisae species 112 662 1 30 Vibrio genus 9221 0 0 326 no rank 2614977 2 192 0 Vibrio sp. EJY3 species 1116375 1 Vibrio sp. 2521-89 species 2014742 1 134 0 0 3407 species group 10 717610 Vibrio harveyi species 669 1 314 0 696485 1 Vibrio owensii species 222 0 species subgroup 2315253 2 0 434 species Vibrio antiquarius 1 150340 128 0 306 0 50719 1 Vibrio diabolicus species 0 594 Vibrio parahaemolyticus species 670 1 426 0 1 691 species Vibrio natriegens 0 118 1 766224 species Vibrio jasicida 452 0 Vibrio campbellii species 680 1 species Vibrio alginolyticus 1 663 684 0 163 0 Vibrio rotiferianus species 190895 1 species Vibrio tritonius 1 1435069 0 177 1 29494 species Vibrio furnissii 357 0 0 411 species Vibrio cholerae 1 666 1 55601 species Vibrio anguillarum 0 411 0 178 52443 1 Vibrio tapetis species species Vibrio tasmaniensis 1 212663 141 0 0 121 species group 1 1891919 0 121 29498 1 Vibrio tubiashii species 0 204 Vibrio gazogenes species 687 1 430 0 674 1 Vibrio mimicus species 0 161 Vibrio hyugaensis species 1534743 1 403 0 Vibrio nigripulchritudo species 28173 1 0 203 Vibrio qinghaiensis species 2025808 1 Vibrio breoganii species 553239 1 215 0 471 0 1 190893 species Vibrio coralliilyticus species Vibrio fluvialis 1 676 375 0 672 1 Vibrio vulnificus species 784 0 species Vibrio scophthalmi 1 45658 334 0 0 19654 135622 1 101 Alteromonadales order 32 72275 1 29 Alteromonadaceae family 55 0 7302 5 genus Alteromonas 10 1 226 2181 0 0 207 1 287094 species Alteromonas addita Alteromonas naphthalenivorans species 715451 1 0 146 352 0 species Alteromonas mediterranea 1 314275 253 0 233316 1 Alteromonas stellipolaris species 28108 1 Alteromonas macleodii species 446 0 589873 1 Alteromonas australica species 178 0 0 594 no rank 2614992 3 1 2058133 species Alteromonas sp. MB-3u-76 161 0 Alteromonas sp. RW2A1 species 1917158 1 217 0 species Alteromonas sp. Mac1 1 1777491 0 216 genus 89404 2 325 0 0 173 2618684 1 no rank 173 0 983545 1 Glaciecola sp. 4H-3-7+YE-5 species species Glaciecola nitratireducens 1 300231 152 0 0 336 1 2 261825 genus Agarivorans 65 0 271 Agarivorans gilvus species 680279 1 534 0 6 Lacimicrobium genus 1751872 1 2 species Lacimicrobium alkaliphilum 1 1526571 528 0 genus Marinobacter 1 10 2742 19 0 3584 1 1420916 species Marinobacter similis 305 0 1101 0 no rank 83889 3 490759 1 Marinobacter sp. BSs20148 species 0 265 485 0 Marinobacter sp. LQ44 species 1749259 1 1 1671721 species Marinobacter sp. CP1 351 0 1 1874317 species Marinobacter salinus 0 213 1 1033846 species Marinobacter adhaerens 469 0 0 677 1 2743 species Marinobacter hydrocarbonoclasticus 567 0 Marinobacter salarius species 1420917 1 Marinobacter psychrophilus species 330734 1 233 0 287 0 2 Paraglaciecola genus 1621534 2 1 0 285 species Paraglaciecola psychrophila 1 326544 5170 0 29 family Shewanellaceae 25 1 267890 0 5141 1 24 22 genus Shewanella 37 232 0 species Shewanella psychrophila 1 225848 217 0 species Shewanella violacea 1 60217 186 0 1 260364 species Shewanella marisflavi 1079 0 6 196818 no rank Shewanella sp. W3-18-1 species 351745 1 0 216 2059264 1 Shewanella sp. Pdp11 species 174 0 species Shewanella sp. WE21 1 2029986 174 0 175 0 Shewanella sp. ANA-3 species 94122 1 166 0 Shewanella sp. MR-4 species 60480 1 1 60481 species Shewanella sp. MR-7 174 0 189 0 Shewanella halifaxensis species 271098 1 0 597 species Shewanella baltica 1 62322 338 0 1 60478 species Shewanella amazonensis species Shewanella loihica 1 359303 0 370 195 0 404011 1 Shewanella piezotolerans species 0 67 species Shewanella denitrificans 1 192073 0 196 species Shewanella woodyi 1 60961 Shewanella frigidimarina species 56812 1 220 0 0 305 Shewanella putrefaciens species 24 1 93973 1 Shewanella japonica species 144 0 0 211 271097 1 Shewanella sediminis species 0 192 Shewanella bicestrii species 2018305 1 70864 1 Shewanella pealeana species 147 0 1 70863 species Shewanella oneidensis 219 0 521 0 6 1 6 267893 family Idiomarinaceae 135575 5 1 Idiomarina genus 12 0 515 Idiomarina piscisalsi species 1096243 1 0 97 2614829 2 no rank 0 293 species Idiomarina sp. OT37-5b 1 2100422 181 0 species Idiomarina sp. X4 1 2055892 112 0 Idiomarina loihiensis species 135577 1 0 113 0 4184 family Pseudoalteromonadaceae 25 1 267888 26 4158 0 89 Pseudoalteromonas genus 53246 1 24 112 0 species Pseudoalteromonas agarivorans 1 176102 Pseudoalteromonas issachenkonii species 152297 1 121 0 175 0 species Pseudoalteromonas espejiana 1 28107 Pseudoalteromonas piscicida species 43662 1 0 196 species Pseudoalteromonas marina 1 267375 214 0 0 160 161398 1 Pseudoalteromonas phenolica species 288 1 Pseudoalteromonas atlantica species 0 219 333 0 298657 1 Pseudoalteromonas spongiae species 5 194690 no rank 931 0 195 0 1 1720343 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 230 0 1 283699 species Pseudoalteromonas sp. Bsw20308 117 0 1 1514074 species Pseudoalteromonas sp. NC201 Pseudoalteromonas sp. SM9913 species 234831 1 165 0 species Pseudoalteromonas sp. 13-15 1 1761891 0 224 1 166935 species Pseudoalteromonas translucida 0 121 0 182 species Pseudoalteromonas aliena 1 247523 394751 1 Pseudoalteromonas arctica species 0 119 0 200 1348114 1 Pseudoalteromonas piratica species 1 43657 species Pseudoalteromonas luteoviolacea 0 152 169 0 Pseudoalteromonas tetraodonis species 43659 1 species Pseudoalteromonas rubra 1 43658 195 0 1 28109 species Pseudoalteromonas nigrifaciens 0 128 Pseudoalteromonas tunicata species 314281 1 0 215 Pseudoalteromonas haloplanktis species 228 1 127 0 7 Colwelliaceae family 267889 1 8 1378 0 Colwellia genus 28228 6 1 7 0 1151 0 642 196834 3 no rank 1816219 1 Colwellia sp. PAMC 21821 species 0 185 1 58049 species Colwellia sp. MT41 205 0 252 0 Colwellia sp. PAMC 20917 species 1816218 1 species Colwellia beringensis 1 1967665 269 0 species Colwellia psychrerythraea 1 28229 0 233 0 220 genus 1518149 1 0 220 1763536 1 Thalassotalea crassostreae species 1 Ferrimonadaceae family 267892 1 3 426 0 0 425 Ferrimonas genus 44011 1 2 3 422 0 species Ferrimonas balearica 1 44012 family 267894 2 431 0 431 0 genus 67572 2 no rank 2614957 1 153 0 0 153 species Psychromonas sp. CNPT3 1 314282 1 357794 species Psychromonas ingrahamii 0 278 210 0 family 2 267891 0 210 58050 1 2 Moritella genus 1 species Moritella viscosa 1 80854 209 0 5 1 28 135625 order Pasteurellales 15574 0 1 27 712 family Pasteurellaceae 78 0 15569 Actinobacillus genus 713 1 5 11 0 1534 291 0 Actinobacillus equuli species 718 1 1 716 species Actinobacillus suis 0 285 0 733 species Actinobacillus pleuropneumoniae 1 715 1 67854 species Actinobacillus succinogenes 0 214 7 genus Mannheimia 1 4 75984 1267 0 419 0 Mannheimia varigena species 85404 1 no rank 2645054 1 0 313 1432056 1 Mannheimia sp. USDA-ARS-USMARC-1261 species 313 0 species Mannheimia haemolytica 1 75985 0 528 1 697331 genus 298 0 [Mannheimia] succiniciproducens species 157673 1 0 298 0 631 genus Pasteurella 1 3 745 1 Pasteurella multocida species 747 1 0 483 0 147 species Pasteurella dagmatis 1 754 1 155493 genus 325 0 325 0 species Gallibacterium anatis 1 750 8 genus Haemophilus 1 6 724 9274 0 1 2609962 no rank 0 280 species Haemophilus sp. oral taxon 036 1 712310 0 280 1 727 species Haemophilus influenzae 1179 0 1 729 species Haemophilus parainfluenzae 0 6689 730 1 [Haemophilus] ducreyi species 513 0 Haemophilus pittmaniae species 249188 1 0 605 310 0 214906 1 genus 0 310 Histophilus somni species 731 1 2094023 1 genus 0 353 1 738 species Glaesserella parasuis 353 0 6 Aggregatibacter genus 416916 3 1 922 0 311 0 species Aggregatibacter actinomycetemcomitans 1 714 species Aggregatibacter aphrophilus 1 732 0 605 577 0 genus 1 476528 0 577 species Bibersteinia trehalosi 1 47735 order Pseudomonadales 1 129 72274 325 0 71076 34 468 1 42 Moraxellaceae family 9129 0 7055 0 46 genus Acinetobacter 1 25 469 0 217 106648 1 Acinetobacter bereziniae species 235 0 species 1 202950 0 235 strain Acinetobacter sp. ADP1 1 62977 Acinetobacter schindleri species 108981 1 230 0 168 0 1 40214 species Acinetobacter johnsonii Acinetobacter radioresistens species 40216 1 0 185 40215 1 Acinetobacter junii species 0 199 203 0 756892 1 Acinetobacter indicus species 0 594 Acinetobacter oleivorans species 1148157 1 0 331 species Acinetobacter equi 1 1324350 species Acinetobacter haemolyticus 1 29430 208 0 0 1128 196816 7 no rank 0 199 Acinetobacter sp. NCu2D-2 species 1608473 1 species Acinetobacter sp. SWBY1 1 2079596 0 125 1808001 1 Acinetobacter sp. LoGeW2-3 species 182 0 217 0 1636603 1 Acinetobacter sp. ACNIH1 species 0 102 Acinetobacter sp. TTH0-4 species 1646498 1 1 1758189 species Acinetobacter sp. ACNIH2 192 0 1407071 1 Acinetobacter sp. TGL-Y2 species 0 111 0 2930 species group 909768 5 Acinetobacter pittii species 48296 1 835 0 Acinetobacter nosocomialis species 106654 1 0 419 Acinetobacter calcoaceticus species 471 1 341 0 0 241 1785128 1 Acinetobacter lactucae species 1094 0 470 1 Acinetobacter baumannii species 1 487316 species Acinetobacter soli 0 237 Acinetobacter larvae species 1789224 1 0 144 11 genus Moraxella 5 1 475 855 0 0 137 29433 1 Moraxella ovis species Moraxella catarrhalis species 480 1 110 0 0 331 1 34062 species Moraxella osloensis 266 0 386891 1 Moraxella bovoculi species 1185 0 13 497 1 11 Psychrobacter genus Psychrobacter cryohalolentis species 330922 1 96 0 196806 6 no rank 0 660 1720344 1 Psychrobacter sp. AntiMn-1 species 132 0 species Psychrobacter sp. P2G3 1 1699622 0 53 76 0 Psychrobacter sp. P11G5 species 1699624 1 0 101 Psychrobacter sp. G species 571800 1 0 233 Psychrobacter sp. DAB_AL43B species 1028416 1 65 0 species Psychrobacter sp. PRwf-1 1 349106 0 85 1 45610 species Psychrobacter urativorans 110 0 Psychrobacter alimentarius species 261164 1 334543 1 Psychrobacter arcticus species 0 221 373 1 86 135621 family Pseudomonadaceae 61622 0 1849530 1 2 Oblitimonas genus 1 0 213 1697053 1 Oblitimonas alkaliphila species 212 0 subfamily 3 351 0 1637 1637 0 20 3 1 352 genus Azotobacter 1060 0 1 353 species Azotobacter chroococcum 0 557 1 354 species Azotobacter vinelandii 59399 0 1927 1 80 286 genus Pseudomonas species Pseudomonas knackmussii 1 65741 545 0 species group 136842 2 0 2867 2307 0 Pseudomonas chlororaphis species 587753 1 0 560 species Pseudomonas fragi 1 296 482 0 Pseudomonas silesiensis species 1853130 1 0 631 237610 1 Pseudomonas psychrotolerans species 0 5724 species group 136849 8 species subgroup 1 251695 2479 0 Pseudomonas syringae species 317 1 0 2479 251698 2 species subgroup 1225 0 0 663 Pseudomonas savastanoi species 29438 1 562 0 1 47877 species Pseudomonas amygdali 46257 1 Pseudomonas avellanae species 327 0 33069 1 Pseudomonas viridiflava species 485 0 2775504 1 no rank 0 276 276 0 species Pseudomonas sp. Lz4W 1 1206777 0 616 Pseudomonas syringae group genomosp. 3 species 251701 1 1 36746 species Pseudomonas cichorii 316 0 Pseudomonas antarctica species 219572 1 410 0 species Pseudomonas koreensis 1 198620 792 0 157783 1 Pseudomonas cremoricolorata species 355 0 527 0 species Pseudomonas alcaliphila 1 101564 0 354 216142 1 Pseudomonas rhizosphaerae species species group 9 136843 8244 0 0 590 200450 1 Pseudomonas trivialis species species Pseudomonas corrugata 1 47879 0 320 species Pseudomonas azotoformans 1 47878 745 0 Pseudomonas orientalis species 76758 1 254 0 0 384 Pseudomonas mandelii species 75612 1 0 708 species Pseudomonas protegens 1 380021 species Pseudomonas poae 1 200451 0 351 4529 0 1 294 species Pseudomonas fluorescens 76761 1 Pseudomonas veronii species 363 0 0 8864 136845 6 species group species Pseudomonas oryzihabitans 1 47885 0 539 78327 1 Pseudomonas mosselii species 1049 0 species Pseudomonas fulva 1 47880 0 564 species Pseudomonas monteilii 1 76759 0 1003 0 414 Pseudomonas plecoglossicida species 70775 1 0 5295 species Pseudomonas putida 1 303 214 0 1 1788301 species Pseudomonas versuta species Pseudomonas frederiksbergensis 1 104087 0 998 Pseudomonas lurida species 244566 1 352 0 1013 0 species Pseudomonas brassicacearum 1 930166 2 136846 species group 0 3420 0 346 species Pseudomonas balearica 1 74829 0 3074 1 578833 species subgroup species Pseudomonas stutzeri 1 316 0 3074 157782 1 Pseudomonas parafulva species 0 708 Pseudomonas entomophila species 312306 1 323 0 no rank 30 196821 12439 0 0 355 Pseudomonas sp. DR 5-09 species 1534110 1 510 0 species Pseudomonas sp. URMO17WK12:I11 1 1283291 564 0 species Pseudomonas sp. Os17 1 1500686 species Pseudomonas sp. LH1G9 1 2083055 0 400 285 0 1827300 1 Pseudomonas sp. MYb193 species 1 1415630 species Pseudomonas sp. TKP 0 440 416 0 Pseudomonas sp. JY-Q species 1338689 1 0 609 1 1294143 species Pseudomonas sp. ATCC 13867 281 0 1 2018067 species Pseudomonas sp. FDAARGOS_380 0 390 2083052 1 Pseudomonas sp. SWI36 species 519 0 species Pseudomonas sp. XWY-1 1 2069256 Pseudomonas sp. MRSN12121 species 1611770 1 503 0 302 0 species Pseudomonas sp. SWI44 1 2083053 species Pseudomonas sp. CC6-YY-74 1 1930532 401 0 Pseudomonas sp. PONIH3 species 1636610 1 498 0 1207075 1 Pseudomonas sp. UW4 species 0 286 species Pseudomonas sp. LPH1 1 1898684 0 489 1 2049589 species Pseudomonas sp. HLS-6 337 0 2083051 1 Pseudomonas sp. SWI6 species 291 0 1981174 1 Pseudomonas sp. M30-35 species 157 0 0 565 species Pseudomonas sp. St29 1 1500687 450 0 species Pseudomonas sp. NC02 1 2067572 1 1259844 species Pseudomonas sp. FGI182 483 0 0 286 1 2083054 species Pseudomonas sp. LG1D9 Pseudomonas sp. S-6-2 species 1931241 1 0 382 Pseudomonas sp. TCU-HL1 species 1856685 1 540 0 1649877 1 Pseudomonas sp. CCOS 191 species 0 467 species Pseudomonas sp. StFLB209 1 1028989 0 556 1 1659194 species Pseudomonas sp. GR 6-02 0 297 0 380 69328 1 Pseudomonas sp. VLB120 species species Pseudomonas cerasi 1 1583341 0 325 6 136841 species group 0 7428 0 1144 Pseudomonas citronellolis species 53408 1 766 0 1 53412 species Pseudomonas resinovorans 1 287 species Pseudomonas aeruginosa 2448 0 1 300 species Pseudomonas mendocina 1908 0 608 0 species subgroup 1 1232139 608 0 species Pseudomonas furukawaii 1 1149133 554 0 species Pseudomonas alcaligenes 1 43263 Pseudomonas alkylphenolica species 237609 1 457 0 0 5423 order Thiotrichales 31 1 72273 2 0 1650 135616 1 12 Piscirickettsiaceae family 16 184 0 2 933 genus 83 0 species Thiomicrospira aerophila 1 92245 101 0 species Thiomicrospira cyclica 1 147268 251 0 genus 1 1237 species Piscirickettsia salmonis 1 1238 251 0 Cycloclasticus genus 34067 4 1 1 0 626 no rank 2 2621467 0 420 0 228 Cycloclasticus sp. PY97N species 728003 1 1 385025 species Cycloclasticus sp. P1 0 192 205 0 species Cycloclasticus zancles 1 1329899 genus 28884 1 0 217 0 217 species Hydrogenovibrio crunogenus 1 39765 40222 1 3 Methylophaga genus 2 0 356 species Methylophaga frappieri 1 754477 0 138 216 0 Methylophaga nitratireducenticrescens species 754476 1 1 Francisellaceae family 34064 1 14 3501 0 genus Francisella 1 12 262 4 0 3373 species Francisella noatunensis 1 657445 0 392 0 196 1 573570 species Francisella sp. TX077310 1 28110 species Francisella philomiragia 513 0 1 622488 species Francisella hispaniensis 231 0 species Francisella tularensis 1 263 1135 0 1542390 1 Francisella sp. CA97-1460 species 0 156 Francisella persica species 954 1 119 0 0 217 species Francisella sp. TX077308 1 573569 0 256 no rank 2610885 2 475375 1 Francisella sp. MA067296 species 135 0 0 121 1547445 1 Francisella sp. FSC1006 species 154 0 1 549298 species Francisella halioticida 1869285 1 genus 0 127 127 0 1 594679 species Allofrancisella guangzhouensis family Thiotrichaceae 1 4 135617 2 0 270 135 0 40751 1 genus species Thioploca ingrica 1 40754 135 0 133 0 2 genus Beggiatoa 2 1 1021 131 0 species Beggiatoa leptomitoformis 1 288004 0 214 3 1 1775403 order Nevskiales 1 family 2689614 2 213 0 2 genus Steroidobacter 1 2 469322 213 0 1 465721 species Steroidobacter denitrificans 0 211 527 0 3 1240482 order 2 Orbaceae family 1240483 1 3 527 0 0 234 genus 1335631 1 234 0 1 1267021 species Frischella perrara 1 1193503 genus 0 291 291 0 Gilliamella apicola species 1196095 1 1687 0 12 118884 no rank 2 655184 genus 236 0 0 70 Candidatus Thioglobus singularis species 1427364 1 1 1705394 species Candidatus Thioglobus autotrophicus 0 166 3 1524249 1 2 Pseudohongiella genus 302 0 1249552 1 Pseudohongiella spirulinae species 0 299 1 1 2 1608298 genus Thiolapillus 332 0 0 331 Thiolapillus brandeum species 1076588 1 463 0 1 genus Sedimenticola 2 1 349742 462 0 Sedimenticola thiotaurini species 1543721 1 103 0 198346 1 clade 0 103 1 186490 species Candidatus Baumannia cicadellinicola 0 251 clade 3 32036 1 1541743 genus 62 0 62 0 Candidatus Ruthia magnifica species 386487 1 0 104 410330 1 Calyptogena okutanii thioautotrophic gill symbiont species Bathymodiolus septemdierum thioautotrophic gill symbiont species 113267 1 0 85 10 1934945 1 3 Immundisolibacterales order 482 0 61 1 2 1934946 family Immundisolibacteraceae 472 0 411 0 1934947 1 genus 1 1810504 species Immundisolibacter cernigliae 411 0 class 5 580370 794 0 2 order Mariprofundales 1 5 580371 794 0 580372 1 4 Mariprofundaceae family 2 0 792 1 3 377315 genus Mariprofundus 1 0 790 255 0 1 1921087 species Mariprofundus ferrinatatus 0 534 species Mariprofundus aestuarium 1 1921086 514 1 528 28211 class Alphaproteobacteria 152397 0 293 0 2 2800059 order 293 0 family 2 2800061 5 74317 2 1 Maricaulis genus 293 0 0 288 1 74318 species Maricaulis maris 166 order Rhodobacterales 1 83 204455 27545 0 31989 82 1 Rhodobacteraceae family 480 0 27379 0 448 genus 309512 1 448 0 1 215813 species Dinoroseobacter shibae 0 2965 1 5 302485 genus Phaeobacter 39 0 814 60890 1 Phaeobacter gallaeciensis species 0 894 species Phaeobacter piscinae 1 1580596 0 973 species Phaeobacter inhibens 1 221822 Phaeobacter porticola species 1844006 1 245 0 0 562 Antarctobacter genus 74032 1 2 1 1 74033 species Antarctobacter heliothermus 0 561 574 0 3 191028 1 2 Leisingera genus 133924 1 Leisingera methylohalidivorans species 571 0 0 256 1759396 2 1 Marivivens genus 8 248 0 1 2622455 no rank 1 1920883 species Marivivens sp. JLT3646 248 0 genus Octadecabacter 1 4 53945 7 0 567 221 0 species Octadecabacter antarcticus 1 1217908 178 0 Octadecabacter temperatus species 1458307 1 161 0 species Octadecabacter arcticus 1 53946 0 244 119541 1 genus 441209 1 Rhodobaca barguzinensis species 0 244 8 5 1 875170 genus Celeribacter 1367 0 Celeribacter marinus species 1397108 1 217 0 466 0 1411902 1 Celeribacter manganoxidans species 0 370 species Celeribacter indicus 1 1208324 Celeribacter ethanolicus species 1758178 1 0 306 genus 1 58842 610 0 2624628 1 no rank 0 610 0 610 1 2009329 species Sagittula sp. P11 no rank 58840 2 637 0 0 280 Rhodobacteraceae bacterium species 1904441 1 0 357 species Rhodobacteraceae bacterium QY30 1 2033435 74030 1 genus 299 0 1 215743 species Roseovarius mucosus 299 0 367 0 genus 1649279 1 0 367 1 379347 species Ruegeria mobilis 436357 1 Thalassococcus genus 3 0 766 0 5 genus Pannonibacter 1 2 227873 1 121719 species Pannonibacter phragmitetus 761 0 2016 0 21 Rhodobacter genus 1060 1 5 2 196779 no rank 582 0 Rhodobacter sp. LPB0142 species 1850250 1 0 238 0 344 1 2033869 species Rhodobacter sp. CZR27 0 415 species Rhodobacter capsulatus 1 1061 0 998 species Rhodobacter sphaeroides 1 1063 1 1284657 genus 122 0 122 0 1 1284658 species Planktomarina temperata 0 1535 478070 1 4 Labrenzia genus 58 Labrenzia aggregata species 187304 1 525 0 0 952 no rank 2648686 2 0 402 1 2021862 species Labrenzia sp. VG12 0 550 1 1674922 species Labrenzia sp. CP4 1 1097466 genus 596 0 0 596 1335048 1 Defluviimonas alba species Marinovum genus 367771 1 2 5 0 441 42444 1 Marinovum algicola species 0 436 888 0 4 1 3 60136 genus Sulfitobacter 0 531 1 1402135 species Sulfitobacter pseudonitzschiae 353 0 no rank 196795 1 353 0 1 1917485 species Sulfitobacter sp. AM1-D1 200 0 1 285107 genus 200 0 Thioclava nitratireducens species 1915078 1 1 2 188905 genus Jannaschia 1 0 223 222 0 no rank 2645469 1 0 222 Jannaschia sp. CCS1 species 290400 1 299261 1 genus 363 0 0 363 species Tateyamaria omphalii 1 299262 1 3 97050 genus Ruegeria 4 0 883 species Ruegeria pomeroyi 1 89184 531 0 no rank 2625375 1 348 0 0 348 Ruegeria sp. TM1040 species 292414 1 2 360528 1 2 Pelagibaca genus 471 0 1 1250539 species Pelagibaca abyssi 469 0 9 34008 4 1 Rhodovulum genus 1436 0 no rank 2631432 2 0 735 366 0 Rhodovulum sp. P5 species 1564506 1 species Rhodovulum sp. MB263 1 308754 369 0 0 692 1 35806 species Rhodovulum sulfidophilum 0 1224 genus 263377 2 1 1229727 species Thiobacimonas profunda 0 583 641 0 no rank 2640570 1 0 641 species Yangia sp. CCB-MM3 1 1792508 1 9 265 genus Paracoccus 60 0 4092 0 803 Paracoccus denitrificans species 266 1 1 147645 species Paracoccus yeei 709 0 0 391 species Paracoccus contaminans 1 1945662 349 0 no rank 1 246570 species Paracoccus sp. BM15 1 1529068 0 349 Paracoccus zhejiangensis species 1077935 1 566 0 0 312 Paracoccus aminophilus species 34003 1 1 34004 species Paracoccus aminovorans 449 0 0 453 1 2065379 species Paracoccus sp. CBA4604 2 2 1 1579315 genus Halocynthiibacter 185 0 0 183 species Halocynthiibacter arcticus 1 1579316 genus 2433 2 605 0 species Roseobacter litoralis 1 42443 0 321 284 0 Roseobacter denitrificans species 2434 1 0 374 genus 1 2211641 245188 1 Loktanella vestfoldensis species 0 374 0 790 92944 1 3 Ketogulonicigenium genus 2 0 475 1 92947 species Ketogulonicigenium robustum 92945 1 Ketogulonicigenium vulgare species 0 313 genus 1 159345 261 0 261 0 species Roseibacterium elongatum 1 159346 genus Confluentimicrobium 1 2 1609958 3 0 529 526 0 no rank 2643318 1 1609966 1 Confluentimicrobium sp. EMB200-NS6 species 0 526 23247 0 254 204441 1 63 Rhodospirillales order 0 13309 family Rhodospirillaceae 1 29 41295 148 0 161 1 1263978 genus 1 1263979 species Candidatus Endolissoclinum faulkneri 0 161 genus Magnetospirillum 1 5 13134 35 0 3007 0 1354 2617991 2 no rank 1 1663591 species Magnetospirillum sp. XM-1 715 0 species Magnetospirillum sp. ME-1 1 1639348 0 639 0 667 84159 1 Magnetospirillum magneticum species Magnetospirillum gryphiswaldense species 55518 1 0 951 1092 0 9 Nitrospirillum genus 1543705 1 2 1083 0 species Nitrospirillum amazonense 1 28077 5 1 2 1182780 genus Magnetospira 354 0 2685734 1 no rank 0 349 Magnetospira sp. QH-2 species 1288970 1 0 349 770 0 8 2 1 1543704 genus Niveispirillum 1612173 1 Niveispirillum cyanobacteriorum species 762 0 1 2 171436 genus Tistrella 17 0 652 species Tistrella mobilis 1 171437 0 635 Thalassospira genus 168934 3 1 11 0 897 1 220697 species Thalassospira xiamenensis 449 0 Thalassospira sp. CSC3H3 species 2048283 1 0 437 genus 1 1804663 108 0 Haematospirillum jordaniae species 1549855 1 108 0 4577 0 58 5 1 191 genus Azospirillum 1042 0 species Azospirillum thiophilum 1 528244 Azospirillum humicireducens species 1226968 1 431 0 Azospirillum lipoferum species 193 1 0 1617 Azospirillum brasilense species 192 1 0 1429 333 0 4 Pararhodospirillum genus 1612157 2 1 329 0 1084 1 Pararhodospirillum photometricum species 0 1210 1081 1 3 Rhodospirillum genus 7 726 0 34018 1 Rhodospirillum centenum species 1085 1 Rhodospirillum rubrum species 477 0 0 9684 1 33 433 family Acetobacteraceae 148 1 genus Asaia 2 1 91914 241 0 240 0 Asaia bogorensis species 91915 1 0 302 genus 1 1602345 1 1510841 species Parasaccharibacter apium 302 0 2 320496 2 1 Neoasaia genus 219 0 320497 1 Neoasaia chiangmaiensis species 217 0 32 genus Acidiphilium 1 3 522 721 0 323 0 Acidiphilium multivorum species 62140 1 524 1 Acidiphilium cryptum species 366 0 5 genus Granulibacter 2 1 364409 783 0 0 778 species Granulibacter bethesdensis 1 364410 9 Gluconobacter genus 441 3 1 726 0 species Gluconobacter oxydans 1 442 0 484 species Gluconobacter albidus 1 318683 233 0 3 89583 1 2 Gluconacetobacter genus 502 0 Gluconacetobacter diazotrophicus species 33996 1 0 499 2855 0 71 genus Acetobacter 1 8 434 0 300 subgenus 1 151157 300 0 Acetobacter aceti species 435 1 0 256 446692 1 Acetobacter senegalensis species Acetobacter pasteurianus species 438 1 1032 0 Acetobacter oryzifermentans species 1633874 1 259 0 0 282 1076596 1 Acetobacter persici species 421 0 species Acetobacter tropicalis 1 104102 65959 1 Acetobacter pomorum species 0 234 1 5 1434011 genus Komagataeibacter 23 0 1689 0 319 Komagataeibacter medellinensis species 1177712 1 Komagataeibacter xylinus species 28448 1 822 0 232 0 1 33995 species Komagataeibacter europaeus 265960 1 Komagataeibacter nataicola species 293 0 1207 0 30 Roseomonas genus 125216 1 3 1 257708 species Roseomonas gilardii 517 0 2617492 1 no rank 0 660 1 2018065 species Roseomonas sp. FDAARGOS_362 0 660 291 0 genus 153497 1 species Kozakia baliensis 1 153496 291 0 5 54526 order 561 0 4 1655514 family 0 459 198251 2 genus 0 198 125 0 1 198252 species Candidatus Pelagibacter ubique no rank 1 2647897 73 0 Candidatus Pelagibacter sp. IMCC9063 species 1002672 1 0 73 261 0 no rank 2 1655516 859653 1 alpha proteobacterium HIMB5 species 0 143 0 118 species alpha proteobacterium HIMB59 1 744985 0 102 2045213 1 genus 1 1925548 species Candidatus Fonsibacter ubiquis 102 0 order 4 2800060 0 711 0 711 Hyphomonadaceae family 69657 1 4 3 genus 85 2 560 0 301 0 1 81032 species Hyphomonas neptunium 0 259 no rank 2630699 1 259 0 1906738 1 Hyphomonas sp. Mor2 species 0 148 2723 1 genus 1 2724 species Hirschia baltica 0 148 94 0 order 255473 2 0 94 Parvularculaceae family 255474 1 2 4 208215 1 genus 90 0 0 90 Parvularcula bermudensis species 208216 1 0 365 1921002 4 order 127 0 1 1777752 family genus 1521255 1 127 0 0 127 species Candidatus Paracaedibacter acanthamoebae 1 91604 family 1 44746 162 0 162 0 no rank 204454 1 162 0 endosymbiont of Acanthamoeba sp. UWC8 species 86106 1 Caedimonadaceae family 2100208 1 2 1 0 76 0 75 1509243 1 genus Candidatus Nucleicultrix amoebiphila species 1509244 1 0 75 34 20 1 204458 order Caulobacterales 6942 0 76892 19 1 Caulobacteraceae family 76 0 6908 75 1 6 Caulobacter genus 58 0 3633 1 69395 species Caulobacter henricii 0 356 521 0 Caulobacter segnis species 88688 1 2648921 1 no rank 991 0 species Caulobacter sp. K31 1 366602 0 991 155892 1 Caulobacter vibrioides species 1155 0 1 69666 species Caulobacter mirabilis 552 0 440 0 10 1 2 76890 genus Asticcacaulis 430 0 1 78587 species Asticcacaulis excentricus 0 1984 Brevundimonas genus 41275 1 7 54 0 345 Brevundimonas vesicularis species 41276 1 0 359 588932 1 Brevundimonas naejangsanensis species 952 0 no rank 2622653 3 1 1938605 species Brevundimonas sp. LM2 0 324 Brevundimonas sp. GW460-12-10-14-LB2 species 1827469 1 0 312 1532555 1 Brevundimonas sp. DS20 species 0 316 0 274 74313 1 Brevundimonas subvibrioides species 1 81440 no rank 162 0 1759059 1 Caulobacteraceae bacterium OTSz_A_272 species 0 162 20 2 1 Phenylobacterium genus 5 0 613 1 284016 species Phenylobacterium zucineum 0 608 order Rickettsiales 1 49 766 1 0 3311 1986 0 25 775 family 1 2115980 genus 105 0 105 0 1 2115978 species Candidatus Phycorickettsia trachydisci 1881 0 33988 24 tribe 176 Rickettsia genus 780 23 1 1785 0 species group 1129742 2 0 342 33990 1 Rickettsia bellii species 0 244 Rickettsia canadensis species 788 1 98 0 880 0 114277 17 species group 0 12 783 1 Rickettsia rickettsii species 35790 1 Rickettsia japonica species 0 6 0 27 species Rickettsia amblyommatis 1 33989 species Rickettsia slovaca 1 35794 0 8 1 781 species Rickettsia conorii 5 0 Rickettsia rhipicephali species 33992 1 0 99 1 786 species Rickettsia akari 128 0 1 35792 species Rickettsia parkeri 0 8 33991 1 Rickettsia montanensis species 0 33 species Rickettsia australis 1 787 175 0 species Rickettsia peacockii 1 47589 21 0 Rickettsia africae species 35788 1 3 0 50 0 1 109232 species Rickettsia monacensis 35791 1 Rickettsia massiliae species 0 31 226665 1 Rickettsia heilongjiangensis species 4 0 42862 1 Rickettsia felis species 0 264 1105106 1 Rickettsia philipii species 0 6 no rank 114295 1 0 186 Rickettsia endosymbiont of Bemisia tabaci species 337479 1 0 186 114292 2 species group 201 0 1 782 species Rickettsia prowazekii 0 50 785 1 Rickettsia typhi species 151 0 0 96 genus 69474 1 1 784 species Orientia tsutsugamushi 96 0 52 0 2 Candidatus Midichloriaceae family 1328881 1 2 genus 411566 1 0 50 50 0 1 234827 species Candidatus Midichloria mitochondrii 0 1117 942 20 family genus 3 33993 96 0 0 32 species Neorickettsia sennetsu 1 951 0 17 Neorickettsia helminthoeca species 33994 1 0 47 1 950 species Neorickettsia risticii tribe 8 952 358 0 0 358 953 1 8 Wolbachia genus 4 2640676 7 no rank 0 354 41 0 246273 1 Wolbachia endosymbiont of Cimex lectularius species 46 0 Wolbachia sp. wRi species 66084 1 species Wolbachia endosymbiont of Brugia malayi 1 80849 0 33 Wolbachia endosymbiont of Onchocerca volvulus species 77551 1 0 29 Wolbachia endosymbiont of Onchocerca ochengi species 100901 1 0 33 163164 1 Wolbachia endosymbiont of Drosophila melanogaster species 25 0 species Wolbachia endosymbiont of Drosophila simulans 1 77038 0 147 3 768 genus 0 238 80 0 1 769 species Anaplasma centrale species Anaplasma marginale 1 770 0 23 species group 1 106179 135 0 948 1 Anaplasma phagocytophilum species 0 135 425 0 7 943 1 6 Ehrlichia genus no rank 106181 1 64 0 64 0 391036 1 Ehrlichia sp. HF species 4 106178 species group 354 0 species Ehrlichia ruminantium 1 779 75 0 83 0 1 945 species Ehrlichia chaffeensis 1 35795 species Ehrlichia muris 0 81 115 0 Ehrlichia canis species 944 1 155 0 1699067 1 no rank 1528098 1 Rickettsiales bacterium Ac37b species 155 0 274 0 order 1191478 2 0 274 family Magnetococcaceae 1 2 1191479 1 162171 1 genus 273 0 0 273 species Magnetococcus marinus 1 1124597 23463 0 143 Sphingomonadales order 204457 1 82 0 18223 family Sphingomonadaceae 59 1 41297 261 294 0 2 Zymomonas genus 541 1 2 Zymomonas mobilis species 542 1 0 292 Rhizorhabdus genus 1649486 2 1 1 0 407 1850238 1 Rhizorhabdus dicambivorans species 0 406 genus Citromicrobium 1 2 72173 1 0 184 0 183 2630544 1 no rank 0 183 1 1634516 species Citromicrobium sp. JL477 genus Sphingorhabdus 1 3 1434046 11 0 611 600 0 no rank 2614947 2 352 0 Sphingorhabdus sp. M41 species 1806885 1 0 248 1 2077182 species Sphingorhabdus sp. YGSMI21 2627 0 43 165697 10 1 Sphingopyxis genus 267128 1 Sphingopyxis granuli species 0 349 1019 0 no rank 2614943 4 320 0 species Sphingopyxis sp. QXT-31 1 1357916 1 1866325 species Sphingopyxis sp. MG 0 228 292913 1 Sphingopyxis sp. 113P3 species 0 231 0 240 Sphingopyxis sp. LPB0140 species 1913578 1 Sphingopyxis fribergensis species 1515612 1 0 234 117207 1 Sphingopyxis alaskensis species 0 238 species Sphingopyxis macrogoltabida 1 33050 544 0 species Sphingopyxis terrae 1 33052 0 200 2 1 150203 genus Blastomonas 1 0 359 1 2626550 no rank 0 358 358 0 species Blastomonas sp. RAC04 1 1842535 15 genus Novosphingobium 5 1 165696 1494 0 Novosphingobium pentaromativorans species 205844 1 0 358 0 445 Novosphingobium resinovorum species 158500 1 1 2644732 no rank 0 335 Novosphingobium sp. PP1Y species 702113 1 335 0 341 0 species Novosphingobium aromaticivorans 1 48935 6382 0 75 15 1 13687 genus Sphingomonas 1 1549858 species Sphingomonas taxi 462 0 425 0 Sphingomonas panacis species 1560345 1 Sphingomonas melonis species 152682 1 0 429 643 0 397260 1 Sphingomonas sanxanigenens species 6 196159 no rank 2623 0 1 745310 species Sphingomonas sp. MM-1 0 517 1 1938607 species Sphingomonas sp. LM7 361 0 species Sphingomonas sp. KC8 1 1030157 288 0 species Sphingomonas sp. LK11 1 1390395 0 514 0 515 species Sphingomonas sp. NIC1 1 1961362 428 0 Sphingomonas sp. Cra20 species 1327635 1 93064 1 Sphingomonas koreensis species 379 0 1075 0 501 species Sphingomonas wittichii 2 1 160791 1 1283312 strain Sphingomonas sp. DC-6 0 574 0 271 species Sphingomonas hengshuiensis 1 1609977 0 5022 1 15 165695 genus Sphingobium 50 374 0 Sphingobium indicum species 332055 1 0 276 Sphingobium japonicum species 332056 1 0 361 1 46429 species Sphingobium chlorophenolicum 0 302 species Sphingobium baderi 1 1332080 206 0 1 76947 species Sphingobium herbicidovorans 0 566 species Sphingobium yanoikuyae 1 13690 2611147 6 no rank 0 2223 Sphingobium sp. MI1205 species 407020 1 0 362 484429 1 Sphingobium sp. YBL2 species 514 0 371 0 species Sphingobium sp. RAC03 1 1843368 191 0 1 1855519 species Sphingobium sp. EP60837 Sphingobium sp. SYK-6 species 627192 1 0 324 461 0 1 1315974 species Sphingobium sp. TKS Sphingobium cloacae species 120107 1 236 0 1673076 1 Sphingobium hydrophobicum species 428 0 276 0 2709685 1 genus 0 276 266812 1 Sphingorhabdus flavimaris species 0 306 2685927 1 genus species Sphingomonas sp. JJ-A5 1 1921510 306 0 family Erythrobacteraceae 1 22 335929 59 0 5097 genus 1 2800682 0 261 0 261 Altererythrobacter namhicola species 645517 1 genus Altererythrobacter 4 1 361177 22 0 792 1 476157 species Altererythrobacter ishigakiensis 143 0 1 1267766 species Altererythrobacter atlanticus 0 352 Altererythrobacter epoxidivorans species 361183 1 275 0 1855416 2 genus 0 577 0 239 species Erythrobacter seohaensis 1 266951 0 338 192812 1 Erythrobacter flavus species 2 2800681 genus 617 0 189 0 1648404 1 Erythrobacter atlanticus species 428 0 502682 1 Erythrobacter gangjinensis species 2 2800686 genus 358 0 0 127 1 692370 species Altererythrobacter dongtanensis 231 0 species Altererythrobacter mangrovi 1 1982042 750 0 9 1295327 1 3 Croceicoccus genus 1348774 1 Croceicoccus naphthovorans species 0 281 1 450378 species Croceicoccus marinus 0 460 0 1366 6 2800788 no rank Porphyrobacter genus 1111 1 3 23 0 659 2 2683265 no rank 636 0 345 0 2023229 1 Porphyrobacter HT-58-2 species species Porphyrobacter sp. LM 6 1 1896196 291 0 0 707 Erythrobacter genus 1041 3 1 16 1 39960 species Erythrobacter litoralis 416 0 0 275 1112 1 Porphyrobacter neustonensis species genus 1 2800685 0 317 317 0 543877 1 Altererythrobacter marensis species 0 1564 6 82117 no rank 375 0 3 Micavibrio genus 213485 2 1 1 349221 species Micavibrio aeruginosavorus 372 0 530 0 20 genus Phreatobacter 1 2 1632780 510 0 1 1868589 species Phreatobacter sp. S-12 0 417 genus 991903 1 1 991904 species Polymorphum gilvum 417 0 clade 1 62654 0 242 767891 1 genus 0 242 242 0 species Candidatus Puniceispirillum marinum 1 767892 0 63513 Rhizobiales order 356 1 205 533 61 1 18 45401 family Hyphomicrobiaceae 4977 0 1 119044 genus 332 0 332 0 1 1608628 species Candidatus Filomicrobium marinum 39 Devosia genus 46913 4 1 1475 0 0 1436 no rank 196773 3 species Devosia sp. A16 1 1736675 656 0 459 0 Devosia sp. H5989 species 1643450 1 2083786 1 Devosia sp. I507 species 321 0 0 439 1 2 59282 genus Blastochloris 13 426 0 1079 1 Blastochloris viridis species 280 0 2 genus Pelagibacterium 1 2 1082930 0 278 531813 1 Pelagibacterium halotolerans species 0 425 genus Rhodoplanes 1 2 29407 9 416 0 no rank 1 2619116 0 416 1 674703 species Rhodoplanes sp. Z2-YC6860 291 0 1 2 1 1068 genus Rhodomicrobium 290 0 Rhodomicrobium vannielii species 1069 1 1674 0 3 81 1 4 Hyphomicrobium genus 501 0 no rank 2619925 1 1 717785 species Hyphomicrobium sp. MC1 0 501 563 0 species Hyphomicrobium denitrificans 1 53399 0 607 Hyphomicrobium nitrativorans species 1427356 1 1 18 772 family Bartonellaceae 4 0 1808 14 genus Bartonella 17 1 773 1804 0 0 76 1 85701 species Bartonella tribocorum 0 48 1 1318743 species Bartonella ancashensis 0 80 1 388640 species Bartonella australis 0 565 1 1686310 species Bartonella apis Bartonella vinsonii species 33047 1 0 74 0 68 Bartonella bacilliformis species 774 1 86 0 species Bartonella clarridgeiae 1 56426 species Bartonella grahamii 1 33045 89 0 1 803 species Bartonella quintana 0 135 515 0 6 2645622 no rank 53 0 515256 1 Bartonella sp. 1-1C species 1933912 1 Bartonella sp. Raccoon60 species 61 0 0 78 1933904 1 Bartonella sp. WD16.2 species 111 0 1 1933907 species Bartonella sp. JB63 111 0 1933906 1 Bartonella sp. JB15 species 1933910 1 Bartonella sp. A1379B species 0 101 54 0 species Bartonella henselae 1 38323 0 5919 Phyllobacteriaceae family 69277 20 1 55 genus Chelativorans 1 2 449972 1 0 421 no rank 2643807 1 420 0 420 0 species Chelativorans sp. BNC1 1 266779 Phyllobacterium genus 28100 1 2 1 0 311 1 1867719 species Phyllobacterium zundukense 310 0 0 3862 Mesorhizobium genus 68287 1 9 118 0 467 species Mesorhizobium opportunistum 1 593909 no rank 1 325217 548 0 species Mesorhizobium sp. WSM1497 1 278153 0 548 Mesorhizobium japonicum species 2066070 1 423 0 Mesorhizobium loti species 381 1 0 469 653 0 1 39645 species Mesorhizobium ciceri 464 0 species Mesorhizobium amorphae 1 71433 1 536018 species Mesorhizobium australicum 0 442 0 278 species Mesorhizobium sp. B7 1 1670800 0 309 genus Hoeflea 2 1 274591 2 no rank 2614931 1 0 307 Hoeflea sp. IMCC20628 species 1620421 1 0 307 574 0 8 31988 2 1 Aminobacter genus Aminobacter aminovorans species 83263 1 566 0 387 0 17 genus Nitratireductor 1 2 245876 472175 1 Nitratireductor basaltis species 370 0 0 11752 family Bradyrhizobiaceae 1 25 41294 118 16 genus Rhodopseudomonas 1 2 1073 2987 0 2971 0 1 1076 species Rhodopseudomonas palustris 292 0 6 40136 1 2 Oligotropha genus 0 286 1 40137 species Oligotropha carboxidovorans 85413 1 5 Bosea genus 55 0 2115 510 0 1 1526658 species Bosea vaviloviae 1550 0 2653178 3 no rank 0 521 Bosea sp. AS-1 species 2015316 1 585 0 1 1842539 species Bosea sp. RAC05 species Bosea sp. PAMC 26642 1 1792307 0 444 5605 0 137 11 1 374 genus Bradyrhizobium 0 3080 no rank 2631580 6 1223566 1 Bradyrhizobium sp. CCGE-LA001 species 514 0 Bradyrhizobium sp. ORS 278 species 114615 1 470 0 1 2057741 species Bradyrhizobium sp. SK17 0 607 1 376 species Bradyrhizobium sp. 480 0 115808 1 Bradyrhizobium sp. ORS 285 species 0 489 Bradyrhizobium sp. BTAi1 species 288000 1 520 0 365 0 1 1274631 species Bradyrhizobium icense 788 0 species Bradyrhizobium diazoefficiens 1 1355477 0 515 44255 1 Bradyrhizobium oligotrophicum species 0 720 375 1 Bradyrhizobium japonicum species 172 0 6 1 2 1649510 genus Variibacter species Variibacter gotjawalensis 1 1333996 0 166 0 463 genus 2 911 207 0 Nitrobacter winogradskyi species 913 1 1 912 species Nitrobacter hamburgensis 256 0 6986 0 33 Methylobacteriaceae family 119045 1 15 155 Methylobacterium genus 407 9 1 3953 0 0 373 1 334852 species Methylobacterium oryzae 1 418223 species Methylobacterium phyllosphaerae 382 0 1 31998 species Methylobacterium radiotolerans 550 0 1297 0 2615210 3 no rank 457 0 Methylobacterium sp. C1 species 1479019 1 0 362 Methylobacterium sp. AMS5 species 925818 1 426117 1 Methylobacterium sp. 4-46 species 478 0 0 513 Methylobacterium nodulans species 114616 1 Methylobacterium aquaticum species 270351 1 0 683 genus 2282523 3 2444 0 Methylobacterium populi species 223967 1 0 753 0 361 species Methylobacterium zatmanii 1 29429 1330 0 Methylobacterium extorquens species 408 1 genus Microvirga 2 1 186650 8 0 556 0 548 Microvirga ossetica species 1882682 1 Rhizobiaceae family 82115 1 53 250 0 21246 genus Shinella 2 1 323620 10 0 568 1 2643062 no rank 0 558 1 879274 species Shinella sp. HZN7 558 0 0 15709 no rank 34 227290 10783 0 765 Rhizobium genus 379 25 1 species Rhizobium gallicum 1 56730 0 456 0 4823 19 2613769 no rank 1 1703965 species Rhizobium sp. N6212 6 0 Rhizobium sp. N324 species 1703969 1 0 397 1 1703962 species Rhizobium sp. N1341 0 2 species Rhizobium sp. Y9 1 1914541 590 0 0 376 1 2048897 species Rhizobium sp. NXC24 68 0 1703966 1 Rhizobium sp. N731 species 1703967 1 Rhizobium sp. N741 species 2 0 species Rhizobium sp. 10195 1 2028343 0 335 1 1125847 species Rhizobium sp. NT-26 0 292 265 0 species Rhizobium sp. Kim5 1 2020311 1 1981173 species Rhizobium sp. NXC14 287 0 0 292 1 1869170 species Rhizobium sp. S41 560 0 Rhizobium sp. ACO-34A species 1571470 1 0 70 2020313 1 Rhizobium sp. TAL182 species 0 279 species Rhizobium sp. IE4771 1 1301032 620 0 1 424182 species Rhizobium sp. IRBG74 6 0 1703964 1 Rhizobium sp. N621 species 0 308 2020312 1 Rhizobium sp. CIAT894 species 0 68 Rhizobium sp. N1314 species 1703961 1 396 1 Rhizobium phaseoli species 0 764 1263 0 1 29449 species Rhizobium etli 0 2228 Rhizobium leguminosarum species 384 1 0 484 Rhizobium tropici species 398 1 Neorhizobium genus 1525371 1 2 6 0 870 0 864 species Neorhizobium galegae 1 399 68 1 7 357 genus Agrobacterium 4056 0 0 504 1 359 species Agrobacterium rhizogenes 1 373 species Agrobacterium vitis 561 0 species group 2 1183400 2076 0 species Agrobacterium fabrum 1 1176649 0 328 1 358 species Agrobacterium tumefaciens 1748 0 847 0 no rank 2632611 2 species Agrobacterium sp. H13-3 1 861208 473 0 0 374 species Agrobacterium sp. RAC06 1 1842536 0 415 1 6 34019 genus Liberibacter 1 35 0 1 34021 species Candidatus Liberibacter asiaticus 35 0 Candidatus Liberibacter solanacearum species 556287 1 0 46 1 309868 species Candidatus Liberibacter americanus 34020 1 Candidatus Liberibacter africanus species 160 0 Liberibacter crescens species 1273132 1 138 0 4304 0 no rank 10 227292 0 792 106591 1 3 Ensifer genus 6 Ensifer sojae species 716925 1 412 0 0 374 species Ensifer adhaerens 1 106592 0 3512 genus Sinorhizobium 1 7 28105 68 0 519 194963 1 Sinorhizobium americanum species 110321 1 Sinorhizobium medicae species 381 0 Sinorhizobium meliloti species 382 1 863 0 792 0 2 2613772 no rank species Sinorhizobium sp. RAC02 1 1842534 0 453 1 794846 species Sinorhizobium sp. CCBAU 05631 0 339 species group 663276 1 889 0 0 889 1 380 species Sinorhizobium fredii Methylocystaceae family 31993 6 1 4 0 795 0 462 Methylocystis genus 133 1 3 1 203 0 species Methylocystis bryophila 1 655015 no rank 1 2625913 258 0 187303 1 Methylocystis sp. SC2 species 0 258 genus Methylosinus 2 1 425 5 0 329 0 324 species Methylosinus trichosporium 1 426 0 369 45404 3 family 194 0 120652 1 genus 1 199596 species Methylocella silvestris 194 0 175 0 1 532 2 1 Beijerinckia genus 174 0 Beijerinckia indica species 533 1 0 251 119043 2 family 10 1 2 256616 genus Parvibaculum 251 0 241 0 Parvibaculum lavamentivorans species 256618 1 family Aurantimonadaceae 7 1 255475 11 0 1963 0 1474 4 1 293088 genus Martelella 11 species Martelella mediterranea 1 293089 442 0 1486262 1 Martelella endophytica species 0 503 2629616 1 no rank 0 518 686597 1 Martelella sp. AD-3 species 0 518 8 414371 2 1 Aureimonas genus 478 0 470 0 2615206 1 no rank 470 0 1349819 1 Aureimonas sp. AU20 species 8 2036754 1 4 Chelatococcaceae family 948 0 0 940 Chelatococcus genus 28209 3 1 19 0 430 1 444444 species Chelatococcus daeguensis 2638111 1 no rank 0 491 1702325 1 Chelatococcus sp. CO-6 species 491 0 119042 6 no rank 0 1328 1484898 1 2 Methyloceanibacter genus 2 0 428 1 1384459 species Methyloceanibacter caenitepidi 0 426 524 0 7 1572860 1 2 Hartmannibacter genus Hartmannibacter diazotrophicus species 1482074 1 0 517 42 Pseudorhodoplanes genus 1734920 1 2 376 0 334 0 Pseudorhodoplanes sinuspersici species 1235591 1 1752 0 25 1 7 335928 family Xanthobacteraceae 422 0 10 Starkeya genus 152053 1 2 1 921 species Starkeya novella 0 412 17 1 2 6 genus Azorhizobium 698 0 Azorhizobium caulinodans species 7 1 681 0 7 279 1 2 Xanthobacter genus 607 0 1 280 species Xanthobacter autotrophicus 0 600 0 2886 118882 1 20 Brucellaceae family 31 0 1270 Brucella genus 234 1 14 430 no rank 4 2632610 0 343 1 1149952 species Brucella sp. 09RB8471 118 0 0 121 Brucella sp. 141012304 species 1885919 1 0 87 species Brucella sp. 09RB8910 1 1844051 0 17 1891098 1 Brucella sp. 2002734562 species 71 0 120576 1 Brucella pinnipedialis species 0 67 species Brucella ceti 1 120577 0 32 1 29459 species Brucella melitensis 33 0 1 235 species Brucella abortus 1 36855 species Brucella canis 66 0 1 29461 species Brucella suis 59 0 122 0 Brucella vulpis species 981386 1 236 1 Brucella ovis species 24 0 23 0 444163 1 Brucella microti species 0 1585 1 5 528 genus Ochrobactrum 10 398 0 Ochrobactrum pituitosum species 571256 1 413 0 419475 1 Ochrobactrum pseudogrignonense species species Ochrobactrum anthropi 1 529 428 0 271865 1 Ochrobactrum sp. A44 species 0 336 0 1630 1 8 1553900 class Oligoflexia 1 13 Bdellovibrionales order 213481 1 5 1251 0 1 213483 1 4 Bdellovibrionaceae family 1238 0 1237 0 3 Bdellovibrio genus 958 1 3 117 0 1 453816 species Bdellovibrio exovorus 1117 0 1 959 species Bdellovibrio bacteriovorus 0 378 2024979 2 order 120 0 1 1652132 family 1 1652133 genus 120 0 Halobacteriovorax marinus species 97084 1 120 0 258 0 1 263369 family 1 146784 genus 0 258 species Bacteriovorax stolpii 1 960 258 0 1 345 28216 class Betaproteobacteria 234 0 146818 33809 2 no rank 515 0 0 328 1 1904640 species Betaproteobacteria bacterium GR16-43 187 0 beta proteobacterium CB species 543913 1 Burkholderiales order 80840 232 1 1162 0 118103 1 58 80864 family Comamonadaceae 377 0 28218 1177 0 22 219181 1 3 Ottowia genus 628 0 Ottowia sp. KADR8-3 species 2109914 1 0 527 1 2645081 no rank 527 0 species Ottowia sp. oral taxon 894 1 1658672 0 1261 Polaromonas genus 52972 1 3 24 216465 1 Polaromonas naphthalenivorans species 729 0 1 2638319 no rank 508 0 508 0 296591 1 Polaromonas sp. JS666 species Alicycliphilus genus 201096 1 2 2 0 957 species Alicycliphilus denitrificans 1 179636 955 0 560 0 genus 2 2490452 species Comamonadaceae bacterium A1 1 1458425 0 234 1 1458426 species Comamonadaceae bacterium B1 0 326 0 2055 47420 1 4 Hydrogenophaga genus 13 1 1763535 species Hydrogenophaga crassostreae 0 574 2610897 2 no rank 1468 0 471 0 Hydrogenophaga sp. RAC07 species 1842537 1 species Hydrogenophaga sp. PBC 1 795665 997 0 Verminephrobacter genus 364316 2 1 3 0 436 0 433 species Verminephrobacter eiseniae 1 364317 0 495 238749 1 2 Diaphorobacter genus 7 488 0 1546149 1 Diaphorobacter polyhydroxybutyrativorans species 2 1 352450 genus Simplicispira 1 0 472 471 0 species Simplicispira sp. SC1-8 1 2109915 5 1 28065 genus Rhodoferax 8 0 2192 1 81479 species Rhodoferax antarcticus 0 621 Rhodoferax saidenbachensis species 1484693 1 550 0 617 0 1842727 1 Rhodoferax koreense species 396 0 192843 1 Rhodoferax ferrireducens species 0 500 1649468 2 1 Melaminivora genus 3 2641902 1 no rank 497 0 species Melaminivora sp. SC2-9 1 2109913 0 497 2 genus Limnohabitans 1 3 665874 520 0 518 0 2 2626134 no rank 193 0 1 1678129 species Limnohabitans sp. 103DPR2 325 0 1678128 1 Limnohabitans sp. 63ED37-2 species 1 1436289 genus 0 322 0 322 species Candidatus Symbiobacter mobilis 1 1436290 2922 0 29 genus Comamonas 4 1 283 225992 1 Comamonas kerstersii species 1084 0 1246 0 1 285 species Comamonas testosteroni species Comamonas serinivorans 1 1082851 0 563 genus 1 2678886 0 696 696 0 Melaminivora sp. SC2-7 species 2116657 1 5284 0 169 1 9 12916 genus Acidovorax 0 616 Acidovorax ebreus species 721785 1 1 80867 species Acidovorax avenae 610 0 2781 0 no rank 4 2684926 661 0 Acidovorax sp. JS42 species 232721 1 840 0 1 358220 species Acidovorax sp. KKS102 589 0 1858609 1 Acidovorax sp. T1 species 0 691 Acidovorax sp. RAC01 species 1842533 1 0 560 species Acidovorax sp. NA3 1 553814 548 0 1 80869 species Acidovorax citrulli 43 5 1 34072 genus Variovorax 3330 0 1145 0 no rank 663243 2 1795631 1 Variovorax sp. PAMC 28711 species 421 0 species Variovorax sp. PMC12 1 2126319 0 724 1 34073 species Variovorax paradoxus 1569 0 436515 1 Variovorax boronicumulans species 0 573 3508 0 83 1 5 80865 genus Delftia no rank 2613839 2 1742 0 991 0 species Delftia sp. Cs1-4 1 742013 species Delftia sp. HK171 1 1920191 0 751 823 0 species Delftia tsuruhatensis 1 180282 Delftia acidovorans species 80866 1 0 860 1154 0 5 Ramlibacter genus 174951 1 2 94132 1 Ramlibacter tataouinensis species 1149 0 5585 0 2 80841 no rank 1469502 1 Burkholderiales bacterium GJ-E10 species 0 223 5362 0 Burkholderiales bacterium YL45 species 1834205 1 17 224471 no rank 6528 0 16 1 2 32012 genus Thiomonas 694 0 0 678 1 926 species Thiomonas intermedia 998 0 18 28067 2 1 Rubrivivax genus 28068 1 Rubrivivax gelatinosus species 980 0 0 741 65047 1 2 Mitsuaria genus 29 no rank 2648776 1 712 0 1 1658665 species Mitsuaria sp. 7 712 0 0 607 genus Paucibacter 1 2 318147 17 0 590 no rank 1 2642959 1 1768242 species Paucibacter sp. KCTC 42545 590 0 17 Leptothrix genus 88 2 1 654 0 0 637 1 34029 species Leptothrix cholodnii 555 0 11 Methylibium genus 316612 2 1 544 0 Methylibium petroleiphilum species 105560 1 743 0 20 genus Rhizobacter 1 2 212743 723 0 946333 1 Rhizobacter gummiphilus species 0 652 species [Polyangium] brachysporum 1 413882 Roseateles genus 93681 1 2 13 0 884 1 76731 species Roseateles depolymerans 871 0 Burkholderiaceae family 119060 84 1 243 0 39265 91 93217 1 10 Pandoraea genus 3687 0 338 0 93222 1 Pandoraea sputorum species 93218 1 Pandoraea apista species 434 0 0 474 573737 1 Pandoraea oxalativorans species 0 348 1 656179 species Pandoraea faecigallinarum 369 0 species Pandoraea thiooxydans 1 445709 328 0 species Pandoraea pulmonicola 1 93221 430 0 Pandoraea norimbergensis species 93219 1 Pandoraea pnomenusa species 93220 1 451 0 0 424 1 656178 species Pandoraea vervacti 802 1 41 32008 genus Burkholderia 18634 0 19 87882 species group 9085 0 0 261 species [Pseudomonas] mesoacidophila 1 265293 442 0 1 60552 species Burkholderia vietnamiensis 1686 0 95486 1 Burkholderia cenocepacia species 488732 1 Burkholderia diffusa species 0 316 201 0 Burkholderia metallica species 488729 1 1 60550 species Burkholderia pyrrocinia 0 213 Burkholderia stabilis species 95485 1 495 0 0 1477 1 292 species Burkholderia cepacia 0 359 152480 1 Burkholderia ambifaria species 234 0 Burkholderia dolosa species 152500 1 Burkholderia ubonensis species 101571 1 802 0 species Burkholderia territorii 1 1503055 0 212 1 488446 species Burkholderia latens 299 0 0 580 1 87883 species Burkholderia multivorans 1 1207504 species Burkholderia pseudomultivorans 0 310 Burkholderia lata species 482957 1 0 423 Burkholderia seminalis species 488731 1 256 0 213 0 Burkholderia stagnalis species 1503054 1 Burkholderia contaminans species 488447 1 306 0 41899 1 Burkholderia plantarii species 0 532 0 1047 Burkholderia gladioli species 28095 1 0 2694 species group 7 111527 1 1637841 species Burkholderia sp. MSMB0852 0 307 Burkholderia oklahomensis species 342113 1 412 0 651 0 1 57975 species Burkholderia thailandensis Burkholderia pseudomallei species 28450 1 0 731 0 189 13373 1 Burkholderia mallei species 259 0 1 1637837 species Burkholderia sp. MSMB0266 145 0 1637831 1 Burkholderia sp. MSMB617WGS species 896 0 337 1 Burkholderia glumae species 0 3578 2613784 11 no rank 1 758796 species Burkholderia sp. RPE67 422 0 640512 1 Burkholderia sp. CCGE1003 species 0 298 341 0 Burkholderia sp. CCGE1001 species 640510 1 201 0 Burkholderia sp. PAMC 28687 species 1795874 1 species Burkholderia sp. Bp7605 1 1740163 307 0 1 1740162 species Burkholderia sp. Bp5365 0 253 0 271 species Burkholderia sp. PAMC 26561 1 1795043 species Burkholderia sp. 2002721687 1 1468409 0 241 species Burkholderia sp. YI23 1 1097668 448 0 527 0 1 1678678 species Burkholderia sp. HB1 269 0 species Burkholderia sp. KJ006 1 416344 Cupriavidus genus 106589 1 9 212 0 6326 82541 1 Cupriavidus gilardii species 0 543 0 626 Cupriavidus metallidurans species 119219 1 1239 0 Cupriavidus necator species 106590 1 0 513 248026 1 Cupriavidus pinatubonensis species 886 0 species Cupriavidus sp. USMAA1020 1 367825 671 0 species Cupriavidus basilensis 1 68895 0 1636 2640874 2 no rank Cupriavidus sp. USMAHM13 species 1389192 1 0 757 876364 1 Cupriavidus sp. USMAA2-4 species 0 879 68 Paraburkholderia genus 1822464 1 12 5207 0 451 0 1 148447 species Paraburkholderia phymatum 398 0 1 36873 species Paraburkholderia xenovorans 672 0 species Paraburkholderia caribensis 1 75105 169430 1 Paraburkholderia hospita species 531 0 0 517 Paraburkholderia terrae species 311230 1 252970 1 Paraburkholderia phenoliruptrix species 362 0 species Paraburkholderia fungorum 1 134537 0 393 no rank 1 2615204 341 0 species Paraburkholderia sp. SOS3 1 1926494 0 341 Paraburkholderia sprentiae species 948107 1 0 563 0 435 1 261302 species Paraburkholderia phytofirmans 1 2026199 species Paraburkholderia aromaticivorans 0 476 1 genus Polynucleobacter 4 1 44013 370 0 1 576610 species Polynucleobacter necessarius 0 96 1835254 1 Polynucleobacter duraquae species 129 0 0 144 1 576611 species Polynucleobacter asymbioticus 0 4296 Ralstonia genus 48736 1 5 72 Ralstonia insidiosa species 190721 1 543 0 1 329 species Ralstonia pickettii 0 1048 0 588 105219 1 Ralstonia mannitolilytica species 0 2045 1 305 species Ralstonia solanacearum 160 0 2571159 1 genus 412963 1 Paraburkholderia rhizoxinica species 0 160 342 0 genus 1827195 1 Burkholderia sp. RPE64 species 758793 1 0 342 22436 0 120 family Alcaligenaceae 1 42 506 305976 2 1 Pusillimonas genus 4 0 469 0 465 no rank 2640016 1 0 465 Pusillimonas sp. T7-7 species 1007105 1 0 225 genus Basilea 2 1 1472344 5 220 0 species Basilea psittacipulmonis 1 1472345 90243 2 1 Oligella genus 2 0 130 128 0 species Oligella urethralis 1 90245 8 genus Orrella 1 2 1921582 856 0 848 0 Orrella dioscoreae species 1851544 1 genus Bordetella 17 1 517 234 0 10054 0 483 1 520 species Bordetella pertussis 622 0 1 463040 species Bordetella genomosp. 13 527 0 species Bordetella genomosp. 6 1 463024 478 0 1 1416803 species Bordetella genomosp. 9 0 1230 species Bordetella bronchiseptica 1 518 1 463025 species Bordetella bronchialis 773 0 1 123899 species Bordetella trematum 0 561 2630031 1 no rank 523 0 species Bordetella sp. H567 1 1697043 0 523 0 622 Bordetella hinzii species 103855 1 species Bordetella flabilis 1 463014 629 0 598 0 Bordetella petrii species 94624 1 1 35814 species Bordetella holmesii 0 377 0 734 Bordetella parapertussis species 519 1 0 595 1331258 1 Bordetella pseudohinzii species 648 0 Bordetella genomosp. 8 species 1416806 1 0 420 1 521 species Bordetella avium 204 Achromobacter genus 222 1 6 7881 0 1 217204 species Achromobacter insolitus 0 682 1302 0 species Achromobacter spanius 1 217203 species Achromobacter xylosoxidans 1 85698 3172 0 0 1759 1 32002 species Achromobacter denitrificans 2626865 1 no rank 0 762 1758194 1 Achromobacter sp. AONIH1 species 762 0 10 290425 1 3 Advenella genus 745 0 0 374 1 302406 species Advenella mimigardefordensis 0 361 species Advenella kashmirensis 1 310575 0 257 genus 2 29574 84590 1 Taylorella asinigenitalis species 0 143 114 0 29575 1 Taylorella equigenitalis species 507 2 1 Alcaligenes genus 6 0 781 775 0 species Alcaligenes faecalis 1 511 161 0 genus 1 1100891 643674 1 Paenalcaligenes hominis species 0 161 757 0 52 359336 2 1 Castellaniella genus 0 705 Castellaniella defragrans species 75697 1 101 family Oxalobacteraceae 1 28 75682 14909 0 3724 0 61 149698 1 6 Massilia genus no rank 2609279 2 1503 0 600 0 1 1707785 species Massilia sp. WG5 0 903 1678028 1 Massilia sp. NR 4-1 species 0 569 Massilia sp. B2 species 2045208 1 0 800 Massilia sp. ZMN-3 species 2072590 1 Massilia putida species 1141883 1 791 0 Herminiimonas genus 303379 1 3 7 0 444 1 204773 species Herminiimonas arsenicoxydans 0 242 1 1809410 species Herminiimonas arsenitoxidans 0 195 3769 0 110 genus Herbaspirillum 6 1 963 1163 0 Herbaspirillum seropedicae species 964 1 0 438 341045 1 Herbaspirillum hiltneri species Herbaspirillum rubrisubalbicans species 80842 1 0 775 0 879 Herbaspirillum frisingense species 92645 1 1 2624150 no rank 0 404 0 404 species Herbaspirillum sp. meg3 1 2025949 0 2210 Collimonas genus 202907 1 4 47 species Collimonas arenae 1 279058 847 0 species Collimonas pratensis 1 279113 671 0 species Collimonas fungivorans 1 158899 645 0 3481 0 38 29580 1 7 Janthinobacterium genus 1 368607 species Janthinobacterium svalbardensis 0 620 2056 0 no rank 2610881 4 Janthinobacterium sp. B9-8 species 1236179 1 0 345 0 698 Janthinobacterium sp. LM6 species 1938606 1 305 0 1 375286 species Janthinobacterium sp. Marseille species Janthinobacterium sp. 1_2014MBL_MicDiv 1 1644131 0 708 767 0 1 55508 species Janthinobacterium agaricidamnosum genus 1 846 1180 0 1 847 species Oxalobacter formigenes 0 1180 119066 11 no rank 0 1144 genus 1 1301080 0 7 1 1160784 species Candidatus Nasuia deltocephalinicola 0 7 1 189384 genus 1 0 1 189385 species Candidatus Tremblaya princeps 0 1 1 33055 1 6 Kinetoplastibacterium genus 635 0 1 994692 species Candidatus Kinetoplastibacterium desouzaii 0 188 0 74 species Candidatus Kinetoplastibacterium oncopeltii 1 994696 1 994695 species Candidatus Kinetoplastibacterium galatii 0 98 0 40 1 233181 species Kinetoplastibacterium blastocrithidii 234 0 Candidatus Kinetoplastibacterium crithidii species 33056 1 Candidatus Accumulibacter genus 327159 2 1 19 0 444 425 0 327160 1 Candidatus Accumulibacter phosphatis species 0 57 1 1381133 genus species Candidatus Profftella armatura 1 669502 0 57 13184 0 150 1 34 206351 order Neisseriales 45 Chromobacteriaceae family 1499392 1 13 4852 0 0 613 Laribacter genus 168470 2 1 4 168471 1 Laribacter hongkongensis species 609 0 Jeongeupia genus 885864 1 2 6 0 407 1 2619593 no rank 401 0 401 0 Jeongeupia sp. USM3 species 1906741 1 2 Pseudogulbenkiania genus 568394 2 1 583 0 no rank 2642558 1 0 581 581 0 748280 1 Pseudogulbenkiania sp. NH8B species 675 0 6 Aquaspirillum genus 187 1 2 0 669 1 2620219 no rank 1938604 1 Aquaspirillum sp. LM1 species 669 0 90153 4 no rank 2529 0 0 2529 1 4 535 genus Chromobacterium 58 690 0 Chromobacterium violaceum species 536 1 1108595 1 Chromobacterium vaccinii species 0 1027 1 2641838 no rank 0 754 0 754 species Chromobacterium sp. ATCC 53434 1 2059672 8182 0 49 481 1 20 Neisseriaceae family 1 71 genus 195 0 1 72 species Simonsiella muelleri 195 0 153 0 no rank 1 421605 0 153 species Neisseriaceae bacterium DSM 100970 1 2052837 0 6506 Neisseria genus 482 1 12 54 1 486 species Neisseria lactamica 0 767 0 1251 487 1 Neisseria meningitidis species species Neisseria elongata 1 495 355 0 2623750 2 no rank 984 0 species Neisseria sp. 10022 1 1853276 371 0 species Neisseria sp. KEM232 1 655307 0 613 species Neisseria mucosa 1 488 0 632 Neisseria sicca species 490 1 621 0 Neisseria weaveri species 28091 1 0 373 0 521 1 326523 species Neisseria zoodegmatis species Neisseria gonorrhoeae 1 485 426 0 0 522 1853278 1 Neisseria sp. 10023 species genus 1 538 0 451 species Eikenella corrodens 1 539 0 451 533 0 6 3 1 59 genus Vitreoscilla no rank 2627922 1 0 140 Vitreoscilla sp. C1 species 96942 1 140 0 1 63 species Vitreoscilla filiformis 0 387 1193515 1 genus 0 295 0 295 species Snodgrassella alvi 1 1196083 0 6345 Nitrosomonadales order 32003 1 43 71 family 4 2772226 0 561 935200 2 1 Sulfuricella genus 9 0 279 0 270 species Sulfuricella denitrificans 1 649841 282 0 4 2 1 1778653 genus Sulfuriferula 2637784 1 no rank 278 0 1985873 1 Sulfuriferula sp. AH1 species 278 0 4 206379 1 12 Nitrosomonadaceae family 1915 0 1154 0 5 1 7 914 genus Nitrosomonas 0 227 915 1 Nitrosomonas europaea species 437 0 2609265 2 no rank 205 0 153948 1 Nitrosomonas sp. AL212 species Nitrosomonas sp. Is79A3 species 261292 1 232 0 174 0 44577 1 Nitrosomonas ureae species 44574 1 Nitrosomonas communis species 174 0 Nitrosomonas eutropha species 916 1 137 0 2 35798 1 4 Nitrosospira genus 757 0 species Nitrosospira lacus 1 1288494 0 211 1 35799 species Nitrosospira briensis 356 0 1231 1 Nitrosospira multiformis species 0 188 7 1 13 32011 family Methylophilaceae 1658 0 0 277 404 2 1 Methylobacillus genus 1 276 0 405 1 Methylobacillus flagellatus species 380 0 1 1 3 359407 genus Methylotenera 194 0 Methylotenera mobilis species 359408 1 185 0 1 1055487 species Methylotenera versatilis 196 0 genus 1679002 2 species Candidatus Methylopumilus turicensis 1 1581680 0 112 84 0 Candidatus Methylopumilus planktonicus species 1581557 1 0 238 genus Methylophilus 1 2 16 2 1 2630143 no rank 0 236 species Methylophilus sp. TWE2 1 1662285 0 236 560 0 10 Methylovorus genus 81682 1 3 2634027 1 no rank 262 0 262 0 887061 1 Methylovorus sp. MP688 species 0 288 1 266009 species Methylovorus glucosotrophus Sterolibacteriaceae family 2008793 5 1 13 0 1087 0 580 Methyloversatilis genus 378210 1 2 7 2639971 1 no rank 573 0 1 1842540 species Methyloversatilis sp. RAC08 0 573 494 0 7 Sulfuritalea genus 1054211 1 2 1 748811 species Sulfuritalea hydrogenivorans 0 487 31 Gallionellaceae family 90627 5 1 772 0 482 0 2 Sideroxydans genus 314343 1 2 0 480 Sideroxydans lithotrophicus species 63745 1 0 259 96 2 1 Gallionella genus 7 252 0 Gallionella capsiferriformans species 370405 1 1 3 2008790 family Thiobacillaceae 7 0 281 5 genus Thiobacillus 2 1 919 274 0 0 269 1 36861 species Thiobacillus denitrificans 7293 0 119 206389 1 22 Rhodocyclales order 21 family Rhodocyclaceae 1 6 75787 1817 0 856 0 5 Azospira genus 146937 2 1 Azospira oryzae species 146939 1 851 0 no rank 1 75788 578 0 1898103 1 Rhodocyclaceae bacterium species 0 578 362 0 8 1 2 551759 genus Aromatoleum 354 0 1 551760 species Aromatoleum aromaticum 4889 0 149 1 12 2008794 family Zoogloeaceae 42 genus Azoarcus 1 5 12960 1972 0 no rank 2 2629479 0 1066 1 198107 species Azoarcus sp. CIB 525 0 541 0 species Azoarcus sp. KH32C 1 748247 0 509 1 418699 species Azoarcus olearius 1 2067960 species Azoarcus sp. SY39 0 355 62 Thauera genus 33057 6 1 2768 0 415 0 1 96773 species Thauera chlorobenzoica 0 1388 no rank 2 2609274 0 674 species Thauera sp. MZ1T 1 85643 1 2005884 species Thauera sp. K11 0 714 0 366 59405 1 Thauera aromatica species Thauera humireducens species 1134435 1 0 537 468 0 1 2008795 1 3 Azonexaceae family 467 0 2 genus Dechloromonas 1 2 73029 0 465 259537 1 Dechloromonas aromatica species no rank 2 2323 181 0 181 0 clade 2 1783234 clade 1 95901 0 106 106 0 class 2497643 1 order 1 2497644 106 0 2497645 1 family 106 0 0 106 1 1551504 genus species Candidatus Babela massiliensis 1 673862 0 106 75 0 phylum 1 95818 0 75 no rank 1895827 1 0 75 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 2056494 1 phylum 5 200940 0 519 519 0 class 67799 5 order 188710 5 519 0 0 519 188711 1 5 Thermodesulfobacteriaceae family 1 0 123 241192 1 genus species Thermodesulfatator indicus 1 171695 0 123 0 102 444090 1 genus 102 0 1 1653476 species Caldimicrobium thiodismutans 0 293 genus 1740 2 0 201 1295609 1 Thermodesulfobacterium geofontis species 1 1741 species Thermodesulfobacterium commune 92 0 0 12677 32066 23 phylum 1 23 203490 class Fusobacteriia 10 0 12677 0 12667 order Fusobacteriales 22 1 203491 53 0 9075 family Fusobacteriaceae 1 11 203492 12 genus 1 167639 321 0 species Ilyobacter polytropus 1 167642 321 0 26 848 9 1 Fusobacterium genus 8742 0 Fusobacterium varium species 856 1 1094 0 Fusobacterium periodonticum species 860 1 1796 0 0 851 species Fusobacterium hwasookii 1 1583098 Fusobacterium gonidiaformans species 849 1 391 0 0 381 species Fusobacterium necrophorum 1 859 Fusobacterium ulcerans species 861 1 802 0 species Fusobacterium nucleatum 1 851 0 2779 0 622 850 1 Fusobacterium mortiferum species family Leptotrichiaceae 1 10 1129771 62 0 3539 1958 0 6 1 5 32067 genus Leptotrichia no rank 2633022 3 1489 0 species Leptotrichia sp. oral taxon 498 1 712368 0 463 1785996 1 Leptotrichia sp. oral taxon 847 species 517 0 509 0 species Leptotrichia sp. oral taxon 212 1 712357 1 40542 species Leptotrichia buccalis 463 0 591 0 1 Sebaldella genus 32068 1 2 Sebaldella termitidis species 826 1 0 590 168808 1 genus 493 0 187101 1 Sneathia amnii species 493 0 435 0 1 34104 genus 1 34105 species Streptobacillus moniliformis 435 0 1783272 1644 clade 0 6524665 12514 0 1 1 99 544448 phylum Tenericutes 713063 2 no rank 0 1007 534 0 species Tenericutes bacterium MZ-XQ 1 1911683 473 0 species Tenericutes bacterium MO-XQ 1 1911684 227 0 no rank 2799557 1 0 227 genus 1912503 1 0 227 1 2624196 no rank 0 227 1 1541959 species Candidatus Izimaplasma sp. HR1 0 11279 31969 1 95 Mollicutes class 31 2085 43 1 Mycoplasmatales order 2 0 4174 5 2092 1 42 Mycoplasmataceae family 4172 0 genus 2129 2 180 0 Ureaplasma urealyticum species 2130 1 87 0 species Ureaplasma parvum 1 134821 0 93 2659 0 36 1 27 2093 genus Mycoplasma 2111 1 Mycoplasma arthritidis species 0 81 1 45362 species Mycoplasma bovoculi 0 86 803 0 3 656088 species group 1 2095 species Mycoplasma capricolum 326 0 0 169 2105 1 Mycoplasma leachii species 1 2102 species Mycoplasma mycoides 308 0 0 95 no rank 1 2683645 0 95 Mycoplasma sp. (ex Biomphalaria glabrata) species 1749074 1 141 0 51365 1 Mycoplasma yeatsii species 0 25 1 136241 species Mycoplasma haemocanis species Mycoplasma dispar 1 86660 45 0 Mycoplasma wenyonii species 65123 1 0 13 0 168 Mycoplasma penetrans species 28227 1 96 0 Mycoplasma hyopneumoniae species 2099 1 29 0 species Mycoplasma ovis 1 171632 Mycoplasma suis species 57372 1 83 0 2128 1 Mycoplasma flocculare species 59 0 43 0 species Mycoplasma haemofelis 1 29501 1 50052 species Mycoplasma crocodyli 0 107 39 0 species Mycoplasma parvum 1 984991 0 97 2123 1 Mycoplasma putrefaciens species 0 26 Mycoplasma pneumoniae species 2104 1 57 0 2097 1 Mycoplasma genitalium species species Mycoplasma gallisepticum 1 2096 0 89 2098 1 Mycoplasma hominis species 111 0 178 0 species Mycoplasma canadense 1 29554 2100 1 Mycoplasma hyorhinis species 68 0 84 0 2118 1 Mycoplasma mobile species 1328 0 12 2767358 genus species Mycoplasma bovigenitalium 1 2112 0 39 1 48003 species Mycoplasma pullorum 52 0 species Mycoplasma cynos 1 171284 0 125 Mycoplasma bovirhinis species 29553 1 0 47 1 2115 species Mycoplasma fermentans 0 209 Mycoplasma californicum species 2113 1 0 101 94 0 species Mycoplasma canis 1 29555 0 72 Mycoplasma arginini species 2094 1 0 129 species Mycoplasma agalactiae 1 2110 2109 1 Mycoplasma synoviae species 64 0 0 284 1 28903 species Mycoplasma bovis 1 2107 species Mycoplasma pulmonis 112 0 5313 0 11 Entomoplasmatales order 186328 39 1 5 33925 1 14 Entomoplasmataceae family 1717 0 23 genus Mesoplasma 1 8 46239 1219 0 2151 1 Mesoplasma florum species 0 271 1 225999 species Mesoplasma syrphidae 0 265 0 141 2149 1 Mesoplasma entomophilum species 1 324078 species Mesoplasma coleopterae 115 0 species Mesoplasma lactucae 1 138853 0 202 Mesoplasma tabanidae species 219745 1 0 100 Mesoplasma chauliocola species 216427 1 0 102 0 493 Entomoplasma genus 46238 1 5 1 74700 1 Entomoplasma freundtii species 0 117 1 214888 species Entomoplasma luminosum 115 0 0 139 Entomoplasma melaleucae species 81459 1 1 215578 species Entomoplasma somnilux 121 0 family Spiroplasmataceae 1 24 2131 7 0 3585 2132 1 23 Spiroplasma genus 32 0 3578 Spiroplasma culicicola species 216935 1 213 0 Spiroplasma mirum species 2144 1 298 0 157 0 species Spiroplasma citri 1 2133 0 180 species Spiroplasma taiwanense 1 2145 species Spiroplasma floricola 1 216937 112 0 97 0 species Spiroplasma sabaudiense 1 216944 Spiroplasma litorale species 216942 1 137 0 114 0 1 216934 species Spiroplasma corruscae Spiroplasma turonicum species 216946 1 167 0 1 2137 species Spiroplasma apis 83 0 0 238 362837 1 Spiroplasma cantharicola species 2136 1 Spiroplasma monobiae species 98 0 0 146 species Spiroplasma chrysopicola 1 216933 92 0 216945 1 Spiroplasma syrphidicola species 214 0 2637901 2 no rank 1898044 1 Spiroplasma sp. TU-14 species 107 0 Spiroplasma sp. NBRC 100390 species 1914410 1 0 107 Spiroplasma kunkelii species 47834 1 131 0 0 196 Spiroplasma helicoides species 216938 1 188 0 species Spiroplasma clarkii 1 2139 1114980 1 Spiroplasma atrichopogonis species 301 0 216936 1 Spiroplasma diminutum species 174 0 210 0 315358 1 Spiroplasma eriocheiris species order 12 186329 1761 0 9 Acholeplasmataceae family 2146 1 12 1761 0 0 450 genus Candidatus Phytoplasma 1 6 33926 7 1 85630 species group 0 83 0 83 37692 1 Candidatus Phytoplasma mali species 98 0 species group 1 85632 species Candidatus Phytoplasma australiense 1 59748 0 98 3 85620 species group 0 262 0 115 Onion yellows phytoplasma species 100379 1 Maize bushy stunt phytoplasma species 202462 1 84 0 species Aster yellows witches'-broom phytoplasma 1 229545 63 0 Acholeplasma genus 2147 5 1 13 0 1302 species Acholeplasma palmae 1 38986 344 0 Acholeplasma laidlawii species 2148 1 0 296 313 0 1 61635 species Acholeplasma brassicae 1 35623 species Acholeplasma oculi 336 0 phylum 35 1297 0 10817 Deinococci class 188787 35 1 44 0 10817 47 order Thermales 1 17 68933 3736 0 0 3689 188786 1 16 Thermaceae family 13 0 747 genus Meiothermus 1 3 65551 3 0 264 species Meiothermus silvanus 1 52022 480 0 species Meiothermus ruber 1 277 0 2234 1 8 270 genus Thermus 27 1 274 species Thermus thermophilus 0 732 Thermus parvatiensis species 456163 1 287 0 56957 1 Thermus oshimai species 337 0 258 0 1 271 species Thermus aquaticus Thermus brockianus species 56956 1 207 0 2619321 1 no rank 0 211 0 211 1111069 1 Thermus sp. CCB_US3_UF1 species Thermus scotoductus species 37636 1 0 175 378 0 7 genus Oceanithermus 1 2 208447 371 0 Oceanithermus profundus species 187137 1 0 317 genus Marinithermus 2 1 186191 4 313 0 Marinithermus hydrothermalis species 186192 1 Deinococcales order 118964 1 15 61 0 6717 family Deinococcaceae 14 1 183710 51 0 6656 6605 0 58 1 13 1298 genus Deinococcus 68909 1 Deinococcus geothermalis species 658 0 0 396 310783 1 Deinococcus deserti species no rank 2623546 1 541 0 0 541 2080419 1 Deinococcus sp. NW-56 species 1 309887 species Deinococcus maricopensis 0 460 0 556 Deinococcus soli Cha et al. 2016 species 1309411 1 622 0 1 1768108 species Deinococcus actinosclerus 1 1182568 species Deinococcus puniceus 425 0 0 414 1299 1 Deinococcus radiodurans species 0 941 Deinococcus proteolyticus species 55148 1 species Deinococcus peraridilitoris 1 432329 0 331 589 0 502394 1 Deinococcus gobiensis species 1 1182571 species Deinococcus swuensis 614 0 320 0 order 2 2762275 Trueperaceae family 332247 2 1 2 0 320 genus 1 332248 0 318 0 318 species Truepera radiovictrix 1 332249 phylum 67819 3 0 259 2 1663419 1 3 Fimbriimonadia class 259 0 257 0 1663425 2 order 4 1663426 1 2 Fimbriimonadaceae family 257 0 253 0 1 1005038 genus 0 253 1 1005039 species Fimbriimonas ginsengisoli 543262 0 24 635 1 201174 phylum Actinobacteria 666 0 4 1 6 84995 class Rubrobacteria 1 5 84996 order Rubrobacterales 13 0 662 84997 4 1 Rubrobacteraceae family 2 0 649 9 genus Rubrobacter 1 3 42255 647 0 49319 1 Rubrobacter xylanophilus species 492 0 146 0 species Rubrobacter radiotolerans 1 42256 586 0 2 5 1 1497346 class Thermoleophilia 0 584 588673 1 4 Solirubrobacterales order 15 0 569 family Conexibacteraceae 1 3 320583 14 8 Conexibacter genus 191494 2 1 555 0 Conexibacter woesei species 191495 1 0 547 1 585 1760 class Actinobacteria 2231 0 439163 0 52037 order Corynebacteriales 1 163 85007 281 no rank 2 697024 169 0 169 0 1 Lawsonella genus 1847725 2 1 species Lawsonella clevelandensis 1 1528099 0 168 family Tsukamurellaceae 1 4 85028 1 0 757 0 756 Tsukamurella genus 2060 1 3 11 0 535 1 57704 species Tsukamurella tyrosinosolvens 0 210 species Tsukamurella paurometabola 1 2061 0 12186 85025 1 31 Nocardiaceae family 53 23 1 1827 genus Rhodococcus 230 0 7390 0 3372 192944 12 no rank 231 0 1 1807790 species Rhodococcus sp. BH4 0 322 Rhodococcus sp. B7740 species 1564114 1 1045808 1 Rhodococcus sp. YL-1 species 0 263 935199 1 Rhodococcus sp. p52 species 213 0 450 0 1 1033922 species Rhodococcus sp. WB1 206 0 1 1653479 species Rhodococcus sp. PBTS 2 Rhodococcus sp. MTM3W5.2 species 1805827 1 280 0 Rhodococcus sp. 008 species 1723645 1 0 267 species Rhodococcus sp. WMMA185 1 679318 115 0 0 311 Rhodococcus sp. 2G species 1570939 1 0 300 species Rhodococcus sp. H-CA8f 1 1727214 species Rhodococcus sp. PBTS 1 1 1653478 414 0 0 353 Rhodococcus hoagii species 43767 1 257 0 Rhodococcus qingshengii species 334542 1 230 0 species Rhodococcus pyridinivorans 1 103816 1833 1 Rhodococcus erythropolis species 0 312 Rhodococcus aetherivorans species 191292 1 0 422 Rhodococcus opacus species 37919 1 940 0 species Rhodococcus ruber 1 1830 0 357 0 417 1 132919 species Rhodococcus jostii Rhodococcus fascians species 1828 1 234 0 Rhodococcus rhodochrous species 1829 1 266 0 46 genus Nocardia 1 7 1817 4743 0 739 0 species Nocardia terpenica 1 455432 species Nocardia farcinica 1 37329 0 588 0 673 37332 1 Nocardia seriolae species 1 37326 species Nocardia brasiliensis 0 929 1043 0 Nocardia cyriacigeorgica species 135487 1 0 725 37330 1 Nocardia nova species 2102 0 27 family Gordoniaceae 1 9 85026 37 Gordonia genus 2053 1 8 2075 0 no rank 2 2657482 0 516 Gordonia sp. KTR9 species 337191 1 263 0 species Gordonia sp. YC-JH1 1 2059875 253 0 271 0 species Gordonia phthalatica 1 1136941 species Gordonia polyisoprenivorans 1 84595 315 0 1 1004901 species Gordonia iterans 0 268 0 337 Gordonia bronchialis species 2054 1 0 331 2055 1 Gordonia terrae species 166 0 1 family Segniliparaceae 1 3 316606 165 0 1 2 1 286801 genus Segniliparus 0 164 286802 1 Segniliparus rotundus species 489 0 2 Dietziaceae family 85029 1 4 37914 3 1 Dietzia genus 11 0 487 Dietzia timorensis species 499555 1 243 0 1 2617939 no rank 233 0 712270 1 Dietzia sp. oral taxon 368 species 233 0 57 1 1762 family Mycobacteriaceae 60 0 16694 genus 1866885 13 0 5081 species Mycobacterium vaccae 1 1810 0 401 306 0 1 1795 species Mycobacterium neoaurum 0 427 1771 1 Mycobacterium phlei species 525 0 Mycobacterium goodii species 134601 1 0 335 758802 1 Mycobacterium litorale species 1772 1 Mycobacterium smegmatis species 0 434 0 383 1804 1 Mycobacterium gilvum species Mycobacterium chubuense species 1800 1 390 0 533 0 Mycobacterium aurum species 1791 1 1766 1 Mycobacterium fortuitum species 0 348 0 365 species Mycobacterium vanbaalenii 1 110539 395 0 Mycobacterium thermoresistibile species 1797 1 Mycobacterium rhodesiae species 36814 1 239 0 genus Hoyosella 1 2 697025 1 0 213 species Hoyosella subflava 1 639313 212 0 34 1 1763 genus Mycobacterium 673 0 9236 3628 0 2642494 13 no rank 199 0 Mycobacterium sp. MCS species 164756 1 1 1168287 species Mycobacterium sp. MOTT36Y 124 0 Mycobacterium sp. WY10 species 1920667 1 267 0 Mycobacterium sp. djl-10 species 1879023 1 0 404 189918 1 Mycobacterium sp. KMS species 209 0 1 1682113 species Mycobacterium sp. YC-RL4 0 418 306 0 Mycobacterium sp. NRRL B-3805 species 1570328 1 400 0 species Mycobacterium sp. PYR15 1 2051552 0 187 Mycobacterium sp. QIA-37 species 1561223 1 1 1273687 species Mycobacterium sp. VKM Ac-1817D 331 0 0 304 Mycobacterium sp. EPa45 species 1545728 1 212767 1 Mycobacterium sp. JS623 species 266 0 164757 1 Mycobacterium sp. JLS species 0 213 1 29311 species Mycobacterium haemophilum 244 0 0 95 species Mycobacterium leprae 1 1769 0 331 1 1768 species Mycobacterium kansasii 4 77643 species group 811 0 1 78331 species Mycobacterium canettii 196 0 0 615 species Mycobacterium tuberculosis 1 3 1773 235 biotype Mycobacterium bovis 1 1765 0 194 186 0 biotype Mycobacterium africanum 1 33894 1975 0 species group 8 120793 260 0 701042 1 Mycobacterium marseillense species 158 Mycobacterium intracellulare species 1767 4 1 661 0 1203599 1 Mycobacterium yongonense subspecies 0 136 297 0 222805 1 Mycobacterium chimaera subspecies 0 70 subspecies Mycobacterium indicus pranii 1 35617 1 1138383 species Mycobacterium paraintracellulare 91 0 311 0 species Mycobacterium colombiense 1 339268 652 0 1764 1 Mycobacterium avium species 0 219 1 261524 species Mycobacterium liflandii species group 1 2249310 229 0 1 722731 species Mycobacterium shigaense 229 0 0 278 1 1781 species Mycobacterium marinum Mycobacterium dioxanotrophicus species 482462 1 0 523 Mycobacterium ulcerans species 1809 1 230 0 genus 5 670516 1460 0 174 0 species Mycobacterium immunogenum 1 83262 species Mycobacterium chelonae 1 1774 0 186 218 0 1578165 1 Mycobacterium saopaulense species 36809 1 Mycobacterium abscessus species 0 687 species Mycobacterium stephanolepidis 1 1520670 195 0 1073531 2 genus 0 644 1 1788 species Mycobacterium terrae 331 0 species Mycobacterium sinense 1 875328 313 0 19193 0 102 family Corynebacteriaceae 1 52 1653 Corynebacterium genus 1716 1 51 426 0 19091 0 4247 42817 1 Corynebacterium argentoratense species Corynebacterium stationis species 1705 1 376 0 1072256 1 Corynebacterium uterequi species 0 225 Corynebacterium sphenisci species 191493 1 347 0 220 0 species Corynebacterium atypicum 1 191610 0 204 species Corynebacterium cystitidis 1 35757 0 139 1050174 1 Corynebacterium epidermidicanis species 1 156978 species Corynebacterium imitans 389 0 1230998 1 Corynebacterium frankenforstense species 0 491 species Corynebacterium kroppenstedtii 1 161879 139 0 1 575200 species Corynebacterium maris 0 225 1 38289 species Corynebacterium jeikeium 542 0 1718 1 Corynebacterium glutamicum species 0 475 263 0 136857 1 Corynebacterium testudinoris species 28028 1 Corynebacterium flavescens species 203 0 0 175 species Corynebacterium kutscheri 1 35755 0 102 Corynebacterium crudilactis species 1652495 1 0 171 1 43771 species Corynebacterium urealyticum species Corynebacterium camporealensis 1 161896 0 314 1727 1 Corynebacterium variabile species 342 0 0 255 [Brevibacterium] flavum species 92706 1 0 370 species Corynebacterium aurimucosum 1 169292 0 130 1 571915 species Corynebacterium mustelae Corynebacterium marinum species 349751 1 310 0 409 0 225326 1 Corynebacterium halotolerans species Corynebacterium humireducens species 1223514 1 411 0 146827 1 Corynebacterium simulans species 0 436 species Corynebacterium callunae 1 1721 0 235 1 1404244 species Corynebacterium glyciniphilum 0 293 0 158 species Corynebacterium pseudotuberculosis 1 1719 1 258224 species Corynebacterium resistens 151 0 0 441 38305 1 Corynebacterium vitaeruminis species 89154 1 Corynebacterium terpenotabidum species 173 0 0 236 1 401472 species Corynebacterium ureicelerivorans 1 65058 species Corynebacterium ulcerans 245 0 Corynebacterium casei species 160386 1 270 0 161899 1 Corynebacterium singulare species 0 160 Corynebacterium diphtheriae species 1717 1 443 0 451 0 152794 1 Corynebacterium efficiens species species Corynebacterium phocae 1 161895 278 0 261 0 Corynebacterium deserti species 1408191 1 108486 1 Corynebacterium falsenii species 0 505 1 1231000 species Corynebacterium lactis 0 301 349 0 1121358 1 Corynebacterium doosanense species 2 2624378 no rank 488 0 1 702967 species Corynebacterium sp. NML98-0116 275 0 1487956 1 Corynebacterium sp. ATCC 6931 species 213 0 species Corynebacterium striatum 1 43770 0 473 1 203263 species Corynebacterium aquilae 0 283 1 1697 species Corynebacterium ammoniagenes 0 290 1 187491 species Corynebacterium glaucum 0 271 Pseudonocardiales order 85010 1 40 27 0 16063 0 16036 family Pseudonocardiaceae 1 39 2070 183 748 0 1 Saccharothrix genus 2071 2 1 0 747 103731 1 Saccharothrix espanaensis species 70 genus Actinosynnema 3 1 40566 1750 0 0 801 40567 1 Actinosynnema mirum species 879 0 1 42197 species Actinosynnema pretiosum genus 1 2029 544 0 Kibdelosporangium phytohabitans species 860235 1 544 0 708 0 4 1835 1 2 Saccharopolyspora genus 0 704 Saccharopolyspora erythraea species 1836 1 0 583 genus Lentzea 1 2 165301 5 578 0 species Lentzea guizhouensis 1 1586287 4266 0 43 Amycolatopsis genus 1813 7 1 0 763 1 33910 species Amycolatopsis mediterranei Amycolatopsis japonica species 208439 1 561 0 1814 1 Amycolatopsis methanolica species 585 0 no rank 2 2618356 0 1325 730 0 Amycolatopsis sp. AA4 species 1896961 1 595 0 species Amycolatopsis sp. BJA-103 1 1911175 species Amycolatopsis orientalis 1 31958 0 989 1 1851 genus 208 0 0 208 1 1852 species Saccharomonospora viridis 360 0 4 1 2 142577 genus Prauserella 0 356 1 530584 species Prauserella marina Kutzneria genus 43356 2 1 5 0 913 0 908 Kutzneria albida species 43357 1 2995 0 66 8 1 1847 genus Pseudonocardia 0 411 1 240495 species Pseudonocardia dioxanivorans no rank 6 2619320 0 2518 1690815 1 Pseudonocardia sp. HH130630-07 species 0 468 1 1096868 species Pseudonocardia sp. EC080625-04 377 0 1096856 1 Pseudonocardia sp. EC080619-01 species 0 430 457 0 1 445576 species Pseudonocardia sp. AL041005-10 1641402 1 Pseudonocardia sp. HH130629-09 species 368 0 Pseudonocardia sp. EC080610-09 species 1688404 1 0 418 Actinoalloteichus genus 65496 6 1 47 0 2242 1470176 1 Actinoalloteichus hoggarensis species 0 462 340345 1 Actinoalloteichus hymeniacidonis species 392 0 459 0 1 1612552 species Actinoalloteichus sp. ADI127-7 882 0 2644606 2 no rank Actinoalloteichus sp. AHMU CJ021 species 2072503 1 411 0 1612551 1 Actinoalloteichus sp. GBA129-24 species 471 0 3 Alloactinosynnema genus 674734 1 2 536 0 2636053 1 no rank 0 533 0 533 Alloactinosynnema sp. L-07 species 1653480 1 115 order Streptomycetales 1 82 85011 46460 0 46345 0 260 1 81 2062 family Streptomycetaceae genus Kitasatospora 1 5 2063 34 0 2911 1 68173 species Kitasatospora albolonga 520 0 608 0 1 1894 species Kitasatospora aureofaciens no rank 1 2633591 911 0 0 911 Kitasatospora sp. MMS16-BH015 species 2018025 1 2066 1 Kitasatospora setae species 0 838 75 1 1883 genus Streptomyces 1290 0 43174 649 0 1930 1 Streptomyces scabiei species 558 0 1926 1 Streptomyces reticuli species 408015 1 Streptomyces xiamenensis species 0 627 1969 1 Streptomyces chartreusis species 0 522 579 0 species Streptomyces albulus 1 68570 1357 0 1477431 2 species group 0 630 1902 1 Streptomyces coelicolor species 42239 1 Streptomyces sampsonii species 0 727 species Streptomyces alboflavus 1 67267 549 0 1 68249 species Streptomyces pactum 0 977 521 0 Streptomyces sp. S10(2016) species 1783515 1 0 708 species Streptomyces autolyticus 1 75293 1 1916 species Streptomyces lividans 560 0 1 1038928 species Streptomyces xinghaiensis 0 346 695 0 146923 1 Streptomyces parvulus species 1 362257 species Streptomyces vietnamensis 473 0 553510 1 Streptomyces gilvosporeus species 560 0 Streptomyces violaceoruber species 1935 1 0 442 species Streptomyces leeuwenhoekii 1 1437453 0 476 1 68214 species Streptomyces griseochromogenes 513 0 519 0 1 68192 species Streptomyces cyaneogriseus species Streptomyces niveus 1 193462 382 0 species Streptomyces glaucescens 1 1907 0 469 Streptomyces violaceusniger species 68280 1 596 0 0 12357 2593676 24 no rank 1 206662 species Streptomyces sp. FR-008 794 0 0 460 1 1961713 species Streptomyces sp. MOE7 species Streptomyces sp. TN58 1 234612 0 466 species Streptomyces sp. Sge12 1 1972846 492 0 0 370 Streptomyces sp. CFMR 7 species 1649184 1 Streptomyces sp. 3211 species 1964449 1 513 0 Streptomyces sp. SAT1 species 1849967 1 497 0 Streptomyces sp. SirexAA-E species 862751 1 0 413 1 444103 species Streptomyces sp. CNQ-509 0 435 0 448 1 2094021 species Streptomyces sp. WAC00288 0 613 1725411 1 Streptomyces sp. CdTB01 species 1 1841249 species Streptomyces sp. RTd22 0 615 708 0 species Streptomyces sp. 769 1 1262452 species Streptomyces sp. CMB-StM0423 1 2059884 610 0 587 0 2135430 1 Streptomyces sp. P3 species 1 1265601 species Streptomyces sp. PAMC 26508 451 0 1661694 1 Streptomyces sp. Tue 6075 species 505 0 0 468 1751294 1 Streptomyces sp. 4F species 1561022 1 Streptomyces sp. CCM_MD2014 species 480 0 360 0 Streptomyces sp. S8 species 1837283 1 species Streptomyces sp. Mg1 1 465541 0 491 1984801 1 Streptomyces sp. CLI2509 species 377 0 species Streptomyces sp. fd1-xmd 1 1812480 0 462 0 742 1495638 1 Streptomyces sp. M56 species 0 445 species Streptomyces albireticuli 1 1940 1 47763 species Streptomyces lydicus 1560 0 Streptomyces pristinaespiralis species 38300 1 403 0 0 409 1901 1 Streptomyces clavuligerus species 522 0 Streptomyces puniciscabiei species 164348 1 1888 1 Streptomyces albus species 1452 0 Streptomyces rubrolavendulae species 285473 1 0 421 1352 0 Streptomyces hygroscopicus species 1912 1 511 0 2049881 1 Streptomyces sp. XZHG99 species Streptomyces lincolnensis species 1915 1 0 503 580 0 29303 1 Streptomyces cattleya species 0 513 1 1889 species Streptomyces ambofaciens 1 92644 species Streptomyces malaysiensis 745 0 Streptomyces alfalfae species 1642299 1 502 0 0 399 68202 1 Streptomyces fulvissimus species 1 1616117 species Streptomyces formicae 0 466 874 0 species group 629295 2 0 436 1482596 1 species subgroup 0 436 1911 1 Streptomyces griseus species 1482558 1 species subgroup 0 438 0 438 1 1908 species Streptomyces globisporus 0 484 1 42684 species Streptomyces collinus 0 841 Streptomyces venezuelae species 54571 1 1971 1 Streptomyces noursei species 0 542 396 0 1 1169025 species Streptomyces pratensis 340 0 species Streptomyces pluripotens 1 1355015 1 1950 species Streptomyces peucetius 0 365 1914 1 Streptomyces lavendulae species 516 0 33903 1 Streptomyces avermitilis species 0 526 0 782 379067 1 Streptomyces bingchenggensis species 3 Actinomycetales order 2037 1 19 10306 0 0 10303 Actinomycetaceae family 2049 1 18 2242 0 827 2 1 1069494 genus Trueperella 1 826 0 Trueperella pyogenes species 1661 1 2529408 1 genus 397 0 Actinomyces meyeri species 52773 1 397 0 1653174 1 2 Actinotignum genus 1 0 210 species Actinotignum schaalii 1 59505 209 0 genus Actinomyces 1 9 1654 35 0 4392 509 0 1 111015 species Actinomyces radicidentis 2609248 3 no rank 1421 0 712122 1 Actinomyces sp. oral taxon 414 species 0 521 0 481 Actinomyces sp. oral taxon 897 species 2081702 1 1851395 1 Actinomyces sp. Chiba101 species 0 419 species Actinomyces sp. VUL4_3 1 1912795 175 0 Actinomyces gaoshouyii species 1960083 1 0 315 0 1491 Actinomyces pacaensis species 1852377 1 Actinomyces oris species 544580 1 446 0 28263 1 genus 0 289 289 0 species Arcanobacterium haemolyticum 1 28264 0 1946 genus Mobiluncus 1 2 2050 173 Mobiluncus curtisii species 2051 1 1773 0 no rank 1 52018 108 0 1 1650658 species Actinobacteria bacterium IMCC26256 108 0 0 963 order Catenulisporales 1 4 414714 1 Catenulisporaceae family 414877 3 1 7 0 962 0 955 genus Catenulispora 1 2 414878 7 948 0 1 304895 species Catenulispora acidiphila 1643684 1 4 Nakamurellales order 2 0 539 537 0 4 family Nakamurellaceae 1 3 85031 6 53460 1 2 Nakamurella genus 533 0 0 527 Nakamurella multipartita species 53461 1 131 0 1 1 3 1643683 order Acidothermales 85032 2 family 130 0 1 Acidothermus genus 28048 2 1 130 0 species Acidothermus cellulolyticus 1 28049 129 0 order Bifidobacteriales 1 25 85004 92 0 249671 Bifidobacteriaceae family 31953 1 24 3658 0 249579 2 1 196081 genus Scardovia 1 0 352 351 0 1 78259 species Scardovia inopinata 244580 0 565 1 19 1678 genus Bifidobacterium species Bifidobacterium pseudocatenulatum 1 28026 0 132161 638619 1 Bifidobacterium actinocoloniiforme species 342 0 1333 0 158787 1 Bifidobacterium scardovii species species Bifidobacterium thermophilum 1 33905 0 703 species Bifidobacterium adolescentis 1 1680 6295 0 216816 1 Bifidobacterium longum species 0 28420 species Bifidobacterium pseudolongum 1 1694 0 1078 1807 0 Bifidobacterium angulatum species 1683 1 species Bifidobacterium bifidum 1 1681 17625 0 0 1368 1689 1 Bifidobacterium dentium species 11435 0 Bifidobacterium breve species 1685 1 307 0 Bifidobacterium coryneforme species 1687 1 species Bifidobacterium asteroides 1 1684 0 513 657 0 species Bifidobacterium animalis 1 28025 Bifidobacterium choerinum species 35760 1 0 427 10179 species Bifidobacterium catenulatum 1 2 1686 39162 0 0 28983 Bifidobacterium kashiwanohense subspecies 630129 1 1 1691 species Bifidobacterium indicum 382 0 0 582 genus 2701 1 0 582 2702 1 Gardnerella vaginalis species 0 407 196082 1 genus 407 0 species Parascardovia denticolens 1 78258 307 0 no rank 1643818 2 7 genus Thermobispora 1 2 147067 307 0 species Thermobispora bispora 1 2006 0 300 8 20 1 85008 order Micromonosporales 7480 0 7472 0 93 Micromonosporaceae family 28056 1 19 743 0 3 3 1 168694 genus Salinispora Salinispora tropica species 168695 1 399 0 Salinispora arenicola species 168697 1 341 0 3127 0 46 genus Actinoplanes 1 6 1865 0 623 1 196914 species Actinoplanes friuliensis no rank 2626549 3 0 1934 0 702 species Actinoplanes sp. N902-109 1 649831 616 0 species Actinoplanes sp. SE50 1 2033844 616 0 134676 1 Actinoplanes sp. SE50/110 species 0 524 Actinoplanes missouriensis species 1866 1 0 1774 Micromonospora genus 1873 1 4 29 458 0 Verrucosispora maris species 1003110 1 species Micromonospora aurantiaca 1 47850 0 641 0 646 no rank 2617518 1 646 0 648999 1 Micromonospora sp. L5 species 22 4 1 673534 genus Plantactinospora 1734 0 no rank 2631981 3 1712 0 2108470 1 Plantactinospora sp. BC1 species 0 541 1 2024580 species Plantactinospora sp. KBS50 0 678 2071627 1 Plantactinospora sp. BB1 species 493 0 Verrucosispora genus 84593 1 1 0 0 518 Glycomycetales order 85014 1 4 5 4 family Glycomycetaceae 3 1 85034 513 0 509 0 1 283810 2 1 Stackebrandtia genus 283811 1 Stackebrandtia nassauensis species 508 0 0 1911 Frankiales order 85013 1 7 5 Frankiaceae family 74712 1 6 19 0 1906 0 1887 Frankia genus 1854 5 1 16 106370 1 Frankia casuarinae species 315 0 0 606 Frankia inefficax species 298654 1 0 451 2632575 1 no rank 451 0 Frankia sp. EAN1pec species 298653 1 0 499 species Frankia alni 1 1859 16 1 85012 order Streptosporangiales 18 0 5409 Nocardiopsaceae family 83676 1 7 43 0 2031 0 331 Thermobifida genus 83677 1 2 6 0 325 2021 1 Thermobifida fusca species 0 1657 2013 4 1 Nocardiopsis genus 18 697 0 species Nocardiopsis dassonvillei 1 2014 0 554 species Nocardiopsis gilva 1 280236 0 388 1 53437 species Nocardiopsis alba 0 2487 2004 5 1 Streptosporangiaceae family 27 15 2000 1 2 Streptosporangium genus 990 0 1 2001 species Streptosporangium roseum 0 975 Nonomuraea genus 83681 1 2 10 0 1470 1460 0 no rank 2593643 1 Nonomuraea sp. ATCC 55076 species 1909395 1 0 1460 0 873 family Thermomonosporaceae 1 3 2012 15 1 2 2019 genus Thermomonospora 10 0 858 1 2020 species Thermomonospora curvata 0 848 21 32 1 85009 order Propionibacteriales 8709 0 82 31957 1 19 Propionibacteriaceae family 5688 0 279 0 genus 2801844 1 1 1750 species Pseudopropionibacterium propionicum 279 0 502 0 3 Acidipropionibacterium genus 1912215 1 2 499 0 1 1748 species Acidipropionibacterium acidipropionici Microlunatus genus 29404 2 1 3 0 357 354 0 Microlunatus phosphovorus species 29405 1 203133 1 genus 0 748 2633994 1 no rank 748 0 0 748 species Propionimicrobium sp. Marseille-P3275 1 1871034 1854 0 17 72763 1 5 Tessaracoccus genus 0 407 species Tessaracoccus aquimaris 1 1332264 0 511 Tessaracoccus flavescens species 399497 1 Tessaracoccus flavus species 1610493 1 424 0 0 495 no rank 1 2635419 species Tessaracoccus sp. T2.5-30 1 1909732 495 0 genus Cutibacterium 1 4 1912216 10 0 866 Cutibacterium acnes species 1747 1 0 311 33011 1 Cutibacterium granulosum species 157 0 388 0 33010 1 Cutibacterium avidum species 0 1000 1743 1 3 Propionibacterium genus 38 0 168 1 2608905 no rank 0 168 671223 1 Propionibacterium sp. oral taxon 193 species 0 794 Propionibacterium freudenreichii species 1744 1 3000 0 32 85015 1 12 Nocardioidaceae family 0 330 2040 2 1 Aeromicrobium genus 2 0 328 1 2041 species Aeromicrobium erythreum 537 0 3 182639 2 1 Kribbella genus 534 0 182640 1 Kribbella flavida species Pimelobacter genus 2044 1 2 1 0 473 472 0 2045 1 Pimelobacter simplex species genus Nocardioides 1 4 1839 16 0 1171 1 2045452 species Nocardioides sp. 78 418 0 Nocardioides dokdonensis species 450734 1 331 0 1 2615069 no rank 406 0 0 406 Nocardioides sp. JS614 species 196162 1 genus 1 116071 0 457 457 0 1 75385 species Micropruina glycogenica order Candidatus Nanopelagicales 1 12 2039638 2 0 941 2162846 11 family 0 939 0 777 genus Candidatus Planktophila 1 7 622681 1 1884914 1 Candidatus Planktophila dulcis species 0 183 124 0 Candidatus Planktophila vernalis species 1884907 1 0 67 1 573600 species Candidatus Planktophila limnetica 200 0 Candidatus Planktophila versatilis species 1884905 1 species Candidatus Planktophila lacus 1 1884913 0 134 0 68 species Candidatus Planktophila sulfonica 1 1884904 162 0 1 2039639 1 4 Candidatus Nanopelagicus genus 1 1884915 species Candidatus Nanopelagicus hibericus 0 36 0 99 1884916 1 Candidatus Nanopelagicus abundans species 0 26 species Candidatus Nanopelagicus limnes 1 1884634 1 135 85006 order Micrococcales 267 0 32916 Brevibacteriaceae family 85019 3 1 2 0 545 0 543 Brevibacterium genus 1696 1 2 28 species Brevibacterium linens 1 1703 0 515 family 125316 1 0 275 0 275 84756 1 genus 275 0 84757 1 Beutenbergia cavernae species Dermabacteraceae family 85020 10 1 29 0 2493 0 2157 Brachybacterium genus 43668 1 6 19 0 370 species Brachybacterium ginsengisoli 1 1331682 0 423 species Brachybacterium faecium 1 43669 469 0 2017484 1 Brachybacterium sp. VM2412 species 0 423 1 2017485 species Brachybacterium sp. VR2415 1 2623841 no rank 453 0 453 0 species Brachybacterium sp. P6-10-X1 1 1903186 188 0 36739 1 genus Dermabacter vaginalis species 1630135 1 188 0 119 0 1 2 1 472568 genus Devriesea 0 118 1 472569 species Devriesea agamarum 1010 0 24 Dermacoccaceae family 145357 1 6 0 310 genus 1 57495 310 0 Dermacoccus nishinomiyaensis species 1274 1 5 1 2 57499 genus Kytococcus 250 0 species Kytococcus sedentarius 1 1276 245 0 1 genus Luteipulveratus 1 2 745364 426 0 425 0 species Luteipulveratus mongoliensis 1 571913 0 83 1 85022 family 83 0 43673 1 genus species Jonesia denitrificans 1 43674 0 83 3 1 6 85016 family Cellulomonadaceae 1258 0 0 1255 Cellulomonas genus 1707 5 1 19 Cellulomonas fimi species 1708 1 324 0 0 210 1 2620175 no rank 1 2003551 species Cellulomonas sp. PSBB021 210 0 species Cellulomonas gilvus 1 11 0 299 0 403 1711 1 Cellulomonas flavigena species 1 9 85021 family Intrasporangiaceae 5 0 1264 369 0 6 Serinicoccus genus 265976 1 2 Serinicoccus sp. JLT9 species 1758689 1 363 0 Arsenicicoccus genus 267408 1 2 2 0 412 no rank 1 2663846 0 410 1 1658671 species Arsenicicoccus sp. oral taxon 190 410 0 Janibacter genus 53457 1 2 14 0 291 277 0 1 857417 species Janibacter indicus 53357 2 1 Intrasporangium genus 2 0 187 1 53358 species Intrasporangium calvum 0 185 0 1686 Promicromonosporaceae family 85017 9 1 17 0 444 Xylanimonas genus 186188 2 1 5 0 439 Xylanimonas cellulosilytica species 186189 1 0 514 1 3 157920 genus Cellulosimicrobium 3 303 0 Cellulosimicrobium cellulans species 1710 1 2624466 1 no rank 0 208 208 0 1 1980001 species Cellulosimicrobium sp. TH-20 11 1 3 254250 genus Isoptericola 711 0 species Isoptericola dokdonensis 1 372663 0 279 0 421 species Isoptericola variabilis 1 139208 34 0 no rank 1 577468 2038 1 genus 0 34 34 0 2039 1 Tropheryma whipplei species 1268 1 38 Micrococcaceae family 660 0 13875 101 0 1645 1 genus 0 101 1 1646 species Renibacterium salmoninarum 115 Arthrobacter genus 1663 1 15 6011 0 0 4708 no rank 235627 12 Arthrobacter sp. QXT-31 species 1357915 1 0 419 0 228 1 1806905 species Arthrobacter sp. ZXY-2 0 462 species Arthrobacter sp. PAMC 25486 1 1494608 1 1652545 species Arthrobacter sp. YC-RL1 0 593 1 1771959 species Arthrobacter sp. ATCC 21022 0 252 426 0 1849032 1 Arthrobacter sp. U41 species 413 0 Arthrobacter sp. ERGS1:01 species 1704044 1 185 0 species Arthrobacter sp. Rue61a 1 1118963 0 561 Arthrobacter sp. LS16 species 1690248 1 315 0 Arthrobacter sp. PGP41 species 2079227 1 0 394 Arthrobacter sp. YN species 2020486 1 0 460 290399 1 Arthrobacter sp. FB24 species species Arthrobacter alpinus 1 656366 0 723 0 465 37928 1 Arthrobacter crystallopoietes species 0 1109 57493 4 1 Kocuria genus 8 species Kocuria palustris 1 71999 308 0 0 410 species Kocuria flava 1 446860 72000 1 Kocuria rhizophila species 383 0 15 genus Pseudarthrobacter 1 4 1742993 1192 0 121292 1 Pseudarthrobacter sulfonivorans species 420 0 0 408 Pseudarthrobacter chlorophenolicus species 85085 1 Pseudarthrobacter phenanthrenivorans species 361575 1 0 349 Micrococcus genus 1269 2 1 2 0 349 species Micrococcus luteus 1 1270 0 347 1 3 32207 genus Rothia 4 0 2720 2047 1 Rothia dentocariosa species 321 0 Rothia mucilaginosa species 43675 1 0 2395 0 311 genus Neomicrococcus 1 2 1868332 2 556325 1 Neomicrococcus aestuarii species 0 309 192 0 1 2078575 genus 192 0 1 1618207 species Arthrobacter sp. IHBB 11108 596707 1 genus 0 348 0 348 species Sinomonas atrocyanea 1 37927 303 0 2 Paenarthrobacter genus 1742992 1 2 0 301 43663 1 Paenarthrobacter aurescens species Glutamicibacter genus 1742989 1 2 2 0 579 577 0 Glutamicibacter arilaitensis species 256701 1 0 422 family 145360 2 422 0 4 1 2 60919 genus Sanguibacter 60920 1 Sanguibacter keddieii species 418 0 1 2 85018 family Dermatophilaceae 1 0 162 0 161 genus 1 1862 Dermatophilus congolensis species 1863 1 161 0 63 Microbacteriaceae family 85023 1 46 9542 0 83 0 1 1434032 genus 1 1159327 species Pontimonas salivibrio 0 83 1 33877 genus 456 0 456 0 1 453304 species Agromyces aureus 1759331 1 2 Cnuibacter genus 1 0 272 species Cnuibacter physcomitrellae 1 1619308 271 0 306 0 1 Frondihabitans genus 447237 2 1 0 305 no rank 1 2626248 1 1795630 species Frondihabitans sp. PAMC 28766 0 305 0 836 1 4 2034 genus Curtobacterium 5 no rank 2 257496 0 573 0 265 species Curtobacterium sp. BH-2-1-1 1 1905847 308 0 1561023 1 Curtobacterium sp. MR_MD2014 species 1 69373 species Curtobacterium pusillum 258 0 0 1091 Clavibacter genus 1573 1 6 75 0 1016 1 5 28447 species Clavibacter michiganensis 227 186 0 Clavibacter nebraskensis subspecies 31963 1 subspecies Clavibacter capsici 1 1874630 196 0 subspecies Clavibacter insidiosus 1 33014 225 0 182 0 subspecies Clavibacter sepedonicus 1 31964 2 Leifsonia genus 110932 1 2 761 0 1 1575 species Leifsonia xyli 759 0 299 0 6 1 2 518733 genus Microterricola 412690 1 Microterricola viridarii species 0 293 1 337004 1 2 Microcella genus 187 0 186 0 279828 1 Microcella alkaliphila species 3 1 69578 genus Cryobacterium 7 0 858 0 434 2649013 1 no rank 434 0 species Cryobacterium sp. LW097 1 1978566 0 417 Cryobacterium arcticum species 670052 1 0 250 no rank 1655488 2 250 0 clade 2 1655489 250 0 genus 529883 2 1 535712 species Candidatus Rhodoluna planktonica 77 0 173 0 529884 1 Rhodoluna lacicola species genus 1705353 1 0 68 Aurantimicrobium minutum species 708131 1 68 0 335 0 1 genus Rathayibacter 3 1 33886 112 0 1 145458 species Rathayibacter toxicus species Rathayibacter tritici 1 33888 222 0 0 3677 Microbacterium genus 33882 1 14 44 200 0 species Microbacterium testaceum 1 2033 8 2609290 no rank 2131 0 0 314 species Microbacterium sp. str. 'China' 1 2103230 367477 1 Microbacterium sp. XT11 species 279 0 155 0 species Microbacterium sp. TPU 3598 1 1938334 species Microbacterium sp. BH-3-3-3 1 1906742 0 261 0 225 species Microbacterium sp. 1.5R 1 1916917 Microbacterium sp. CGR1 species 1696072 1 205 0 1714373 1 Microbacterium sp. No. 7 species 0 319 Microbacterium sp. PAMC 28756 species 1795053 1 0 373 0 160 species Microbacterium chocolatum 1 84292 0 386 Microbacterium aurum species 36805 1 0 405 162426 1 Microbacterium hominis species species Microbacterium paludicola 1 300019 351 0 order 3 622450 388 0 1 1 3 622451 family Actinopolysporaceae 388 0 2 1 2 1849 genus Actinopolyspora 387 0 Actinopolyspora erythraea species 414996 1 385 0 0 607 order Kineosporiales 1 4 622452 3 Kineosporiaceae family 83778 1 3 16 0 604 3 genus Kineococcus 1 2 33981 588 0 585 0 1 131568 species Kineococcus radiotolerans order Geodermatophilales 1 8 1643682 2 0 1468 1466 0 19 85030 1 7 Geodermatophilaceae family 620 0 10 genus Modestobacter 2 1 88138 610 0 1 477641 species Modestobacter marinus 324 0 1 38501 1 2 Blastococcus genus 323 0 Blastococcus saxobsidens species 138336 1 4 Geodermatophilus genus 1860 2 1 503 0 0 499 1 1861 species Geodermatophilus obscurus 238 0 4 1752188 no rank 1 1848756 species Actinobacteria bacterium IMCC26103 0 40 77 0 Actinobacteria bacterium IMCC26077 species 1848755 1 0 46 1 1848754 species Actinobacteria bacterium IMCC19121 species Actinobacteria bacterium IMCC25003 1 1848255 75 0 1 1 5 84992 class Acidimicrobiia 357 0 order Acidimicrobiales 1 4 84993 28 0 356 266 0 2448023 1 family 266 0 genus 682522 1 0 266 species Ilumatobacter coccineus 1 467094 62 0 3 family Acidimicrobiaceae 1 2 84994 0 59 53634 1 genus species Acidimicrobium ferrooxidans 1 53635 0 59 0 102228 1 29 84998 class Coriobacteriia 405 Eggerthellales order 1643822 1 15 372 0 29918 1643826 1 14 Eggerthellaceae family 5321 0 29546 0 2571 Adlercreutzia genus 447020 1 2 1 0 2570 Adlercreutzia equolifaciens species 446660 1 124 genus Eggerthella 3 1 84111 7452 0 0 6200 84112 1 Eggerthella lenta species 1128 0 1 2648737 no rank 502558 1 Eggerthella sp. YY7918 species 1128 0 0 6420 genus 1 1981050 0 6420 Phoenicibacter massiliensis species 1944646 1 1867 0 4 genus Slackia 1 2 84108 0 1863 Slackia heliotrinireducens species 84110 1 957 0 1 79603 genus 957 0 Denitrobacterium detoxificans species 79604 1 genus 84162 1 321 0 Cryptobacterium curtum species 84163 1 321 0 4637 0 30 Gordonibacter genus 644652 3 1 2322 0 1 1335613 species Gordonibacter urolithinfaciens 1 1841863 species Gordonibacter massiliensis 0 2285 71905 0 161 Coriobacteriales order 84999 1 13 1 6 1643824 family Atopobiaceae 92 0 5493 4569 0 20 Olsenella genus 133925 4 1 2280 0 1805478 1 Olsenella sp. Marseille-P2300 species 0 1420 species Olsenella uli 1 133926 849 0 2638792 1 no rank 712411 1 Olsenella sp. oral taxon 807 species 849 0 genus 1 2767353 0 832 1382 1 Atopobium parvulum species 0 832 389 family Coriobacteriaceae 1 6 84107 66251 0 0 816 Coriobacterium genus 33870 1 2 1 0 815 33871 1 Coriobacterium glomerans species 1096 0 84113 1 no rank species Coriobacteriaceae bacterium 68-1-3 1 1531429 0 1096 63950 0 6 2 1 102106 genus Collinsella 63944 0 Collinsella aerofaciens species 74426 1 200795 41 phylum 0 5972 1239 0 1 Anaerolineae class 292625 1 6 1238 0 7 Anaerolineales order 292629 1 5 Anaerolineaceae family 292628 1 4 6 0 1231 2019482 1 genus 0 246 species Brevefilum fermentans 1 1986204 246 0 genus 1 233189 363 0 0 363 1 167964 species Anaerolinea thermophila 616 0 no rank 1324991 1 1889813 1 Anaerolineaceae bacterium oral taxon 439 species 616 0 1 5 1382928 class Ardenticatenia 11 0 884 Ardenticatenales order 1382929 1 4 8 0 873 1382930 1 3 Ardenticatenaceae family 2 0 865 genus Candidatus Promineofilum 1 2 1988031 6 0 863 0 857 1806508 1 Candidatus Promineofilum breve species 1 Caldilineae class 475962 1 5 424 0 475963 4 1 Caldilineales order 12 0 423 0 411 1 3 475964 family Caldilineaceae 2 0 409 233191 1 2 Caldilinea genus 1 0 408 1 133453 species Caldilinea aerophila 18 class Chloroflexia 1 10 32061 1547 0 29 Chloroflexales order 32064 9 1 1529 0 0 842 1508595 4 suborder 0 842 1 4 1508635 family Roseiflexaceae 6 genus Roseiflexus 1 3 120961 1 0 836 2609473 1 no rank 0 389 0 389 357808 1 Roseiflexus sp. RS-1 species species Roseiflexus castenholzii 1 120962 0 446 658 0 1508594 4 suborder 658 0 family 4 1106 0 658 1107 1 4 Chloroflexus genus 1 0 211 Chloroflexus aggregans species 152260 1 species Chloroflexus aurantiacus 2 1 1108 223 0 446 223 0 strain Chloroflexus sp. Y-400-fl 1 480224 Dehalococcoidia class 301297 1 7 1 0 1318 715 0 order 1202465 3 715 0 1202464 3 family 0 715 Dehalococcoides genus 61434 1 3 4 0 595 Dehalococcoides mccartyi species 61435 1 0 116 237581 1 no rank Dehalococcoides sp. UCH007 species 1522671 1 0 116 670486 3 1 Dehalogenimonas genus 4 0 602 Dehalogenimonas formicexedens species 1839801 1 354 0 0 244 Dehalogenimonas lykanthroporepellens species 552810 1 4 class Thermomicrobia 1 8 189775 560 0 order Thermomicrobiales 1 3 189776 1 0 149 1 2 189777 family Thermomicrobiaceae 4 0 148 genus 1 499 0 144 species Thermomicrobium roseum 1 500 0 144 0 407 subclass 4 85000 Sphaerobacterales order 85001 1 4 7 0 407 suborder 255728 3 0 400 2 Sphaerobacteraceae family 85002 1 3 400 0 9 2056 1 2 Sphaerobacter genus 398 0 1 2057 species Sphaerobacter thermophilus 389 0 no rank 1 1859062 104 0 0 104 262406 1 genus 1 166501 species Thermobaculum terrenum 0 104 25853 0 1798711 135 clade 1 135 1117 phylum Cyanobacteria 3 0 25853 0 126 no rank 1 1983111 species cyanobacterium endosymbiont of Epithemia turgida 1 718217 0 126 4 52604 order 727 0 0 484 1 3 1890498 family Dermocarpellaceae 2 482 0 genus 102115 2 no rank 2642663 1 0 165 165 0 1807358 1 Stanieria sp. NIES-3757 species species Stanieria cyanosphaera 1 102116 0 317 family 1 1890500 243 0 genus 44474 1 243 0 0 243 54308 1 Pleurocapsa minor species 5868 0 subclass 36 1301283 2339 0 17 1150 15 1 Oscillatoriales order 509 0 1892252 2 family 136 0 genus 44471 1 136 0 2642155 1 no rank 0 136 1 1173027 species Microcoleus sp. PCC 7113 genus 1205 1 0 373 373 0 Trichodesmium erythraeum species 1206 1 1892249 1 3 Cyanothecaceae family 1 0 175 7 Cyanothece genus 43988 1 2 174 0 1 2649277 no rank 167 0 395961 1 Cyanothece sp. PCC 7425 species 167 0 family Oscillatoriaceae 1 5 1892254 1 0 844 286 0 2 Moorea genus 1155738 1 2 Moorea producens species 1155739 1 284 0 557 0 genus 2 1158 482564 1 Oscillatoria nigro-viridis species 0 304 118323 1 Oscillatoria acuminata species 0 253 Gomontiellaceae family 1892255 2 1 19 0 341 241421 1 genus 0 322 species Crinalium epipsammum 1 241425 0 322 Coleofasciculaceae family 1892251 1 2 1 0 453 genus 1 63132 0 452 452 0 1 2648775 no rank 0 452 1 1173025 species Geitlerinema sp. PCC 7407 3529 0 4 order Chroococcales 1 21 1118 0 794 Chroococcaceae family 1890464 1 6 3 0 140 1 268175 genus 0 140 no rank 2648896 1 140 0 Chondrocystis sp. NIES-4102 species 2005460 1 1 genus Geminocystis 1 3 669357 513 0 512 0 no rank 2 2625037 320 0 1615909 1 Geminocystis sp. NIES-3708 species 1 1617448 species Geminocystis sp. NIES-3709 0 192 0 138 102231 1 genus 2623012 1 no rank 0 138 species Gloeocapsa sp. PCC 7428 1 1173026 138 0 700 0 2 Microcystaceae family 1890449 1 4 1 1 3 1125 genus Microcystis 698 0 0 467 1126 1 Microcystis aeruginosa species no rank 2643300 1 230 0 1967666 1 Microcystis sp. MC19 species 230 0 family 1890450 8 0 1474 genus 28070 2 0 541 0 281 1 2546359 species Cyanothece sp. PCC 7822 strain 497965 1 281 0 1 2546356 species 0 260 0 260 strain Cyanothece sp. PCC 7424 1 65393 genus 2 2546365 453 0 0 453 species 2 2546366 0 231 Cyanothece sp. PCC 8801 strain 41431 1 Cyanothece sp. PCC 8802 strain 395962 1 0 222 244 0 no rank 2 92682 4 1 2 76023 genus Halothece 244 0 0 240 no rank 2632878 1 0 240 65093 1 Halothece sp. PCC 7418 species 0 92 1 1453359 genus 713887 1 Candidatus Atelocyanobacterium thalassa species 92 0 0 144 263510 1 genus 1 2546360 species 0 144 Cyanothece sp. ATCC 51142 strain 43989 1 144 0 1 1890452 2 1 Cyanobacteriaceae family 557 0 102234 1 genus 0 556 species Cyanobacterium aponinum 1 379064 0 556 1 1161 1 32 Nostocales order 7341 0 210 0 no rank 1219117 1 1940762 1 Nostocales cyanobacterium HT-58-2 species 0 210 0 257 family 2 1892263 1 2 1190 genus Fischerella 1 0 257 1 494603 no rank 0 256 256 0 1752063 1 Fischerella sp. NIES-3754 species 1 Rivulariaceae family 1185 1 3 525 0 2 373984 1 2 Rivularia genus 524 0 522 0 no rank 2676603 1 0 522 species Rivularia sp. PCC 7116 1 373994 0 2244 2661849 8 family 0 2244 genus Calothrix 1 8 1186 9 6 2619626 no rank 0 1977 1 1337936 species Calothrix sp. 336/3 172 0 Calothrix sp. NIES-4101 species 2005461 1 411 0 0 218 2005462 1 Calothrix sp. NIES-3974 species 0 604 2005469 1 Calothrix sp. NIES-4071 species 0 312 species Calothrix sp. PCC 7507 1 99598 species Calothrix sp. NIES-2098 1 1954171 260 0 1 32054 species Calothrix parietina 258 0 0 4104 Nostocaceae family 1162 1 17 11 0 2571 genus Nostoc 10 1 1177 7 species Nostoc punctiforme 1 272131 394 0 719 0 Nostoc flagelliforme species 1306274 1 1451 0 no rank 7 2593658 0 194 Nostoc sp. PCC 7524 species 28072 1 Nostoc sp. CENA543 species 1869241 1 170 0 0 175 Nostoc sp. PCC 7120 species 103690 1 190 0 Nostoc sp. NIES-3756 species 1751286 1 332 0 1 1261031 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' Nostoc sp. PCC 7107 species 317936 1 146 0 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 1618022 1 244 0 1021 0 2 Anabaena genus 1163 1 4 0 443 species Anabaena cylindrica 1 1165 no rank 2 2619674 576 0 Anabaena sp. WA102 species 1647413 1 221 0 1 46234 species Anabaena sp. 90 355 0 0 501 genus 2 264688 0 186 1164 1 Trichormus azollae species 0 315 1 264691 species Trichormus variabilis 0 10777 Synechococcales order 1890424 1 54 61 1 1890429 family 0 245 155977 1 genus 0 245 1 155978 species Acaryochloris marina 0 245 1 4 1213 family Prochloraceae 2 0 1226 0 1224 3 1218 genus 998 0 1 1219 species Prochlorococcus marinus 0 226 no rank 2 2627481 species Prochlorococcus sp. MIT 0604 1 1501268 100 0 1 1501269 species Prochlorococcus sp. MIT 0801 0 126 6963 0 15 family Synechococcaceae 33 1 1890426 1207 0 8 1 3 167375 genus Cyanobium 0 513 Cyanobium gracile species 59930 1 0 686 2627006 1 no rank 686 0 1 1851505 species Cyanobium sp. NIES-981 0 5427 1129 1 26 Synechococcus genus 69 Synechococcus lividus species 33070 1 0 132 32046 1 Synechococcus elongatus species 287 0 23 2626047 no rank 4939 0 272 0 species Synechococcus sp. KORDI-52 1 585425 0 381 Synechococcus sp. JA-2-3B'a(2-13) species 321332 1 1 1827144 species Synechococcus sp. NIES-970 170 0 92 0 1280380 1 Synechococcus sp. KORDI-100 species 321327 1 Synechococcus sp. JA-3-3Ab species 0 424 110662 1 Synechococcus sp. CC9605 species 305 0 272 0 species Synechococcus sp. PCC 7502 1 1173263 1 84588 species Synechococcus sp. WH 8102 0 258 1 32049 species Synechococcus sp. PCC 7002 101 0 species Synechococcus sp. CC9311 1 64471 132 0 1 195498 species Synechococcus sp. PCC 7117 0 90 82 0 1 195253 species Synechococcus sp. PCC 6312 0 199 species Synechococcus sp. WH 8109 1 166314 128 0 species Synechococcus sp. CC9902 1 316279 1 1350461 species Synechococcus sp. UTEX 2973 355 0 292 0 316278 1 Synechococcus sp. RCC307 species Synechococcus sp. PCC 8807 species 195248 1 0 106 Synechococcus sp. SynAce01 species 1916956 1 297 0 Synechococcus sp. PCC 73109 species 374982 1 77 0 species Synechococcus sp. KORDI-49 1 585423 189 0 0 196 species Synechococcus sp. WH 7803 1 32051 species Synechococcus sp. PCC 7003 1 374981 284 0 1 29410 species Synechococcus sp. WH 8103 237 0 1 146785 genus 0 151 151 0 Thermosynechococcus elongatus species 146786 1 13034 1 2 Dactylococcopsis genus 4 0 163 Dactylococcopsis salina species 292566 1 159 0 1 6 1890438 family Leptolyngbyaceae 15 0 1296 Leptolyngbya genus 47251 1 5 1 0 1281 0 230 1184 1 Leptolyngbya boryana species 0 1050 no rank 3 2650499 species Leptolyngbya sp. NIES-3755 1 1752064 247 0 0 590 1 1080068 species Leptolyngbya sp. O-77 species Leptolyngbya sp. PCC 7376 1 111781 0 213 615 0 2 1890428 1 5 Merismopediaceae family 0 613 Synechocystis genus 1142 1 4 9 3 2640012 no rank 604 0 209 0 species Synechocystis sp. IPPAS B-1465 1 2116702 species Synechocystis sp. PCC 6803 1 1148 209 0 Synechocystis sp. PCC 6714 species 1147 1 0 186 133 0 1890436 2 family 1 1152 2 1 Pseudanabaena genus 133 0 1 2593292 no rank 0 132 132 0 Pseudanabaena sp. PCC 7367 species 82654 1 0 238 2 2303730 family 0 238 genus Halomicronema 1 2 170610 1 237 0 species Halomicronema hongdechloris 1 1209493 0 849 Gloeobacteria class 307596 6 1 5 0 844 Gloeobacterales order 307595 1 5 6 0 838 family Gloeobacteraceae 1 4 1890422 5 7 Gloeobacter genus 33071 1 3 833 0 1416614 1 Gloeobacter kilaueensis species 0 332 494 0 33072 1 Gloeobacter violaceus species 0 162 1 1890505 order 1890528 1 family 162 0 162 0 1 54298 genus Chroococcidiopsis thermalis species 54299 1 162 0 0 5925884 phylum Firmicutes 1 695 1239 80 4 526524 1 11 Erysipelotrichia class 10981 0 0 10977 Erysipelotrichales order 526525 10 1 13 10964 0 33 Erysipelotrichaceae family 128827 1 9 2228 0 6 genus Turicibacter 1 2 191303 2638206 1 no rank 2222 0 0 2222 species Turicibacter sp. H121 1 1712675 1 544447 no rank 0 5226 5226 0 Erysipelotrichaceae bacterium I46 species 1834207 1 23 1647 3 1 Erysipelothrix genus 906 0 0 470 Erysipelothrix larvae species 1514105 1 0 413 1648 1 Erysipelothrix rhusiopathiae species 0 2571 1729679 1 2 Faecalibaculum genus 4 2567 0 1 1702221 species Faecalibaculum rodentium 0 38755 1 28 909932 class Negativicutes 18 23 order Acidaminococcales 1 5 1843488 15868 0 15845 0 10 909930 4 1 Acidaminococcaceae family 15835 0 60 genus Acidaminococcus 1 3 904 905 1 Acidaminococcus fermentans species 4245 0 0 11530 1 187327 species Acidaminococcus intestini 0 11654 Veillonellales order 1843489 1 10 695 1087 31977 9 1 Veillonellaceae family 10959 0 194 Megasphaera genus 906 2 1 3079 0 Megasphaera elsdenii species 907 1 2885 0 13 39948 2 1 Dialister genus 672 0 species Dialister pneumosintes 1 39950 659 0 5 genus Veillonella 3 1 29465 5550 0 species Veillonella rodentium 1 248315 0 1291 0 4254 1 29466 species Veillonella parvula 909928 1 genus 0 571 Negativicoccus massiliensis species 1702287 1 571 0 order Selenomonadales 1 12 909929 44 0 11215 79 family Selenomonadaceae 1 8 1843491 8979 0 59 Selenomonas genus 970 1 6 7507 0 3606 0 2637378 3 no rank 0 1219 species Selenomonas sp. oral taxon 478 1 712538 0 1110 1884263 1 Selenomonas sp. oral taxon 920 species Selenomonas sp. oral taxon 136 species 713030 1 0 1277 971 1 Selenomonas ruminantium species 2435 0 69823 1 Selenomonas sputigena species 0 1407 1393 0 genus 158846 1 0 1393 158847 1 Megamonas hypermegale species 2192 0 family 3 1843490 3 1 365348 genus Pelosinus 13 0 2192 1215 0 2629460 1 no rank Pelosinus sp. UFO1 species 484770 1 0 1215 1 365349 species Pelosinus fermentans 964 0 1 5 1676648 class Limnochordia 2 0 532 0 530 1676649 1 4 Limnochordales order 7 0 523 family Limnochordaceae 1 3 1676650 13 0 510 1 2 1676651 genus Limnochorda 5 1555112 1 Limnochorda pilosa species 0 505 Tissierellia class 1737404 1 16 1 0 10832 1737407 1 no rank 460 0 1582879 1 genus 0 460 1 1852374 species Ezakiella massiliensis 460 0 order Tissierellales 1 14 1737405 33 0 10371 2942 1 10 1570339 family Peptoniphilaceae 9591 0 1 1161127 genus 3877 0 1 1852373 species Murdochiella vaginalis 0 3877 543311 1 2 Parvimonas genus 4 0 1026 1022 0 33033 1 Parvimonas micra species 1 165779 1 3 Anaerococcus genus 690 0 Anaerococcus mediterraneensis species 1870984 1 0 320 0 369 species Anaerococcus prevotii 1 33034 162289 1 genus 330 0 330 0 no rank 1 2637196 Peptoniphilus sp. ING2-D1G species 1912856 1 0 330 726 0 1 1 2 150022 genus Finegoldia 725 0 Finegoldia magna species 1260 1 Gottschalkiaceae family 2042895 3 1 1 0 747 0 746 Gottschalkia genus 1505664 1 2 5 741 0 1556 1 Gottschalkia acidurici species 378 0 1 84086 no rank species endosymbiont 'TC1' of Trimyema compressum 1 243899 0 378 0 5560024 186801 1 208 Clostridia class 146 1 3 485256 order Natranaerobiales 1 0 520 2 485255 family 0 519 519 0 17 375928 2 1 Natranaerobius genus species Natranaerobius thermophilus 1 375929 502 0 order 2770089 3 0 1960 family 2 2770093 0 1438 Thermosediminibacter genus 291988 2 1 14 0 1438 291990 1 Thermosediminibacter oceani species 0 1424 family 1 2770092 0 522 0 522 genus 1 499228 0 522 499229 1 Tepidanaerobacter acetatoxydans species 9603 186802 1 157 Clostridiales order 5544353 0 0 67118 family Clostridiaceae 41 1 31979 560 1 genus Geosporobacter 1 2 390805 1437 0 0 1436 1 1424294 species Geosporobacter ferrireducens 43 0 1981033 1 Mordavella genus 7 genus Candidatus Arthromitus 1 4 49082 1320 0 no rank 2638829 3 1313 0 1 1041504 species Candidatus Arthromitus sp. SFB-rat-Yit 0 365 1 49118 species Candidatus Arthromitus sp. SFB-mouse 487 0 0 461 Candidatus Arthromitus sp. SFB-mouse-NL species 1508644 1 62070 0 426 genus Clostridium 30 1 1485 1534 1 Clostridium kluyveri species 1288 0 species Clostridium sporogenes 1 1509 0 858 3549 0 1502 1 Clostridium perfringens species species Clostridium carboxidivorans 1 217159 1428 0 394958 1 Clostridium taeniosporum species 0 1451 0 1066 46867 1 Clostridium chauvoei species no rank 2 2614128 15755 0 1 755731 species Clostridium sp. BNL1100 0 1520 1042156 1 Clostridium sp. SY8519 species 14235 0 0 862 Clostridium acetobutylicum species 1488 1 2041 0 species Clostridium baratii 1 1561 2190 0 species Clostridium saccharoperbutylacetonicum 1 36745 species Clostridium pasteurianum 1 1501 0 2913 species Clostridium tyrobutyricum 1 1519 910 0 6712 0 1 1491 species Clostridium botulinum 1 1513 species Clostridium tetani 0 1263 238834 1 Clostridium estertheticum species 0 920 species Clostridium scatologenes 1 1548 0 1357 species Clostridium butyricum 1 1492 2187 0 825 0 Clostridium novyi species 1542 1 0 3293 1 1520 species Clostridium beijerinckii 0 1090 1494 1 Clostridium cochlearium species species Clostridium ljungdahlii 1 1538 976 0 0 1154 1 29341 species Clostridium argentinense Clostridium aceticum species 84022 1 909 0 994 0 84023 1 Clostridium autoethanogenum species Clostridium bornimense species 1216932 1 0 1384 1837 0 Clostridium cellulovorans species 1493 1 0 1587 169679 1 Clostridium saccharobutylicum species Clostridium formicaceticum species 1497 1 845 0 1688 0 10 Alkaliphilus genus 114627 3 1 1 461876 species Alkaliphilus oremlandii 782 0 species Alkaliphilus metalliredigens 1 208226 896 0 0 8173 1 3 216572 family Oscillospiraceae 3 0 8170 Oscillibacter genus 459786 1 2 13 8157 0 351091 1 Oscillibacter valericigenes species 68298 2 family 700 0 129001 1 genus 0 282 0 282 1 86170 species Syntrophothermus lipocalidus genus 1 862 418 0 1 863 species Syntrophomonas wolfei 418 0 21067 0 11 2304686 family 0 1126 1 2304691 genus 1126 0 1510 1 [Clostridium] stercorarium species genus 1 2304693 0 1238 species [Clostridium] thermosuccinogenes 1 84032 1238 0 1 2305130 no rank 10998 0 0 10998 1834198 1 Ruminiclostridium sp. KB18 species 3605 0 2304692 3 genus 0 1453 1 288965 species [Clostridium] clariflavum 1515 1 Ruminiclostridium thermocellum species 0 1328 Herbivorax saccincola species 1677857 1 824 0 0 1874 1 1637257 genus 1 884684 species Mageeibacillus indolicus 0 1874 1647 0 194 genus Ruminiclostridium 1 2 1508657 species [Clostridium] cellulolyticum 1 1521 0 1453 0 579 236752 2 1 Fastidiosipila genus 1 236753 1 Fastidiosipila sanguinis species 578 0 10 5 1 186806 family Eubacteriaceae 8792 0 7885 0 156 Eubacterium genus 1730 2 1 0 7729 Eubacterium limosum species 1736 1 2 33951 2 1 Acetobacterium genus 897 0 895 0 species Acetobacterium woodii 1 33952 Peptostreptococcaceae family 186804 9 1 204 0 46866 41777 0 153 Clostridioides genus 1870884 2 1 41624 0 species Clostridioides difficile 1 1496 0 1121 44259 1 genus species Filifactor alocis 1 143361 0 1121 701 0 186831 1 genus 701 0 1511 1 Acetoanaerobium sticklandii species 417 0 1 1411023 no rank 0 417 2081703 1 Peptostreptococcaceae bacterium oral taxon 929 species 0 1213 1849828 2 1 Paeniclostridium genus 5 1 1505 species Paeniclostridium sordellii 1208 0 1481960 1 genus 0 1433 0 1433 1731 1 Peptoclostridium acidaminophilum species 1260 186803 1 26 Lachnospiraceae family 3856447 0 4 2 1 841 genus Roseburia 185139 0 0 185135 Roseburia hominis species 301301 1 1 28050 genus 0 75479 0 75479 1 39485 species [Eubacterium] eligens 0 79264 Blautia genus 572511 3 1 30 1 1322 species Blautia hansenii 0 45126 0 34108 2648079 1 no rank 1 1796616 species Blautia sp. YL58 0 34108 147099 0 genus 2569097 1 species [Eubacterium] hallii 1 39488 0 147099 0 46554 genus 2719313 1 [Clostridium] bolteae species 208479 1 0 46554 Anaerostipes genus 207244 2 1 131 0 199620 649756 1 Anaerostipes hadrus species 0 199489 20 genus Butyrivibrio 1 3 830 10022 0 1 185008 species Butyrivibrio hungatei 0 5248 4754 0 1 43305 species Butyrivibrio proteoclasticus 191 1506553 1 4 Lachnoclostridium genus 47012 0 25487 0 Lachnoclostridium phocaeense species 1871021 1 66219 1 Lachnoclostridium phytofermentans species 4312 0 17022 0 no rank 2608895 1 Lachnoclostridium sp. YL32 species 1834196 1 17022 0 2719231 1 genus 21382 0 21382 0 [Clostridium] saccharolyticum species 84030 1 1963 0 1 Cellulosilyticum genus 698776 1 2 species Cellulosilyticum lentocellum 1 29360 0 1962 3 1 2 2039240 genus Anaerotignum 2009 0 1 28446 species Anaerotignum propionicum 2006 0 1 1663717 genus 0 2736 1 1679721 species Herbinix luporum 0 2736 3036908 0 no rank 2 186928 [Eubacterium] rectale species 39491 1 3027476 0 species Lachnospiraceae bacterium oral taxon 500 1 712991 0 9432 0 1412855 family Ruminococcaceae 1 13 541000 148 0 241740 1263 3 1 Ruminococcus genus 60 0 236162 1 1160721 species Ruminococcus bicirculans 1 1264 species Ruminococcus albus 5518 0 0 2480 no rank 552397 1 2480 0 1 29343 species [Clostridium] cellulosi 1 0 genus Herbivorax 1 1890281 0 1133019 Faecalibacterium genus 216851 1 2 756 0 1132263 Faecalibacterium prausnitzii species 853 1 no rank 2305133 1 0 5091 Ruminococcaceae bacterium CPB6 species 1572656 1 5091 0 12 253238 1 2 Ethanoligenens genus 5241 0 0 5229 Ethanoligenens harbinense species 253239 1 genus Flavonifractor 1 2 946234 30 0 25135 0 25105 1 292800 species Flavonifractor plautii 9 538999 no rank 78435 0 557 1392389 1 2 Intestinimonas genus 28199 0 1 1297617 species Intestinimonas butyriciproducens 27642 0 0 44667 2717089 1 genus 0 44667 2086584 1 Mordavella sp. Marseille-P3756 species 1 1 3 539000 family Clostridiales Family XVII. Incertae Sedis 803 0 12 genus Thermaerobacter 2 1 73918 802 0 Thermaerobacter marianensis species 73919 1 0 790 6 Clostridiales Family XIII. Incertae Sedis family 543314 3 1 4766 0 1 143393 species [Eubacterium] sulci 0 2470 genus 1 86331 0 2290 114527 1 Mogibacterium diversum species 0 2290 1 3 543349 family Symbiobacteriaceae 3 0 1056 10 Symbiobacterium genus 2733 2 1 1053 0 1043 0 2734 1 Symbiobacterium thermophilum species 1345 0 1 3 1 31984 family Heliobacteriaceae 1344 0 29 2697 2 1 Heliobacterium genus 35701 1 Heliobacterium modesticaldum species 0 1315 10 3 1 990719 family Christensenellaceae 16165 0 Christensenella genus 990721 1 2 540 0 16155 1805714 1 Christensenella massiliensis species 0 15615 68 Peptococcaceae family 186807 28 1 15731 0 0 2576 79206 1 4 Desulfosporosinus genus 51 Desulfosporosinus acidiphilus species 885581 1 700 0 0 839 1 79209 species Desulfosporosinus meridiei 0 986 Desulfosporosinus orientis species 1563 1 3 471826 1 2 Candidatus Desulforudis genus 395 0 species Candidatus Desulforudis audaxviator 1 471827 0 392 580 0 8 genus Thermincola 1 2 278993 Thermincola potens species 863643 1 572 0 Desulfotomaculum genus 1562 1 5 31 0 2494 Desulfotomaculum nigrificans species 1565 1 0 627 1833852 1 Desulfotomaculum ferrireducens species 479 0 522 0 species Desulfotomaculum reducens 1 59610 0 835 Desulfotomaculum ruminis species 1564 1 1 2282740 genus 703 0 species Desulfotomaculum gibsoniae 1 102134 0 703 Syntrophobotulus genus 51196 2 1 1 0 732 731 0 1 51197 species Syntrophobotulus glycolicus genus 2282742 1 602 0 0 602 species Desulfotomaculum acetoxidans 1 58138 17 36853 1 5 Desulfitobacterium genus 3168 0 species Desulfitobacterium metallireducens 1 142877 545 0 species Desulfitobacterium dichloroeliminans 1 233055 573 0 1279 0 1 49338 species Desulfitobacterium hafniense 36854 1 Desulfitobacterium dehalogenans species 754 0 2902 0 12 Dehalobacter genus 56112 1 4 0 1924 no rank 2 2635733 0 937 species Dehalobacter sp. DCA 1 1147129 0 987 species Dehalobacter sp. CF 1 1131462 1 55583 species Dehalobacter restrictus 0 966 1511 0 1 51514 genus Dehalobacterium formicoaceticum species 51515 1 0 1511 0 2070 Halanaerobiales order 53433 1 10 1 731 0 6 Halobacteroidaceae family 53434 1 3 0 395 genus 1 42417 42422 1 Halobacteroides halobius species 395 0 1 28186 genus 0 330 0 330 1 28187 species Acetohalobium arabaticum 0 1338 972 1 6 Halanaerobiaceae family 2 6 1 2 32636 genus Halothermothrix 330 0 31909 1 Halothermothrix orenii species 324 0 4 1 3 2330 genus Halanaerobium 1006 0 2331 1 Halanaerobium praevalens species 482 0 520 0 1 656519 species Halanaerobium hydrogeniformans Thermoanaerobacterales order 68295 1 34 8 0 10975 family 227387 1 0 115 227388 1 genus 0 115 1 184064 species Thermodesulfobium narugense 115 0 441 0 3 Thermoanaerobacterales Family IV. Incertae Sedis family 543372 1 3 1 genus Mahella 1 2 252965 438 0 0 437 species Mahella australiensis 1 252966 0 5170 543371 1 13 Thermoanaerobacterales Family III. Incertae Sedis family 8 0 3282 Caldicellulosiruptor genus 44000 1 9 62 species Caldicellulosiruptor owensensis 1 55205 314 0 52766 1 Caldicellulosiruptor lactoaceticus species 0 355 717609 1 Caldicellulosiruptor obsidiansis species 517 0 0 476 species Caldicellulosiruptor saccharolyticus 1 44001 species Caldicellulosiruptor bescii 1 31899 390 0 330 0 52765 1 Caldicellulosiruptor kristjanssonii species 1 413888 species Caldicellulosiruptor hydrothermalis 0 395 413889 1 Caldicellulosiruptor kronotskyensis species 443 0 genus Thermoanaerobacterium 1 3 28895 4 0 1880 1 1517 species Thermoanaerobacterium thermosaccharolyticum 1195 0 1 29329 species Thermoanaerobacterium xylanolyticum 0 681 0 5241 Thermoanaerobacteraceae family 186814 1 16 6 487 0 genus 129957 1 1 129958 species Carboxydothermus hydrogenoformans 0 487 467 0 12 249529 1 2 Caldanaerobacter genus 455 0 Caldanaerobacter subterraneus species 911092 1 Thermoanaerobacter genus 1754 9 1 84 0 3140 355 0 1 29323 species Thermoanaerobacter brockii 965 0 2636821 2 no rank 517 0 species Thermoanaerobacter sp. X513 1 573062 1 399726 species Thermoanaerobacter sp. X514 448 0 1 46354 species Thermoanaerobacter wiegelii 0 390 0 355 496866 1 Thermoanaerobacter pseudethanolicus species 0 324 583357 1 Thermoanaerobacter mathranii species species Thermoanaerobacter kivui 1 2325 323 0 0 344 Thermoanaerobacter italicus species 108150 1 303 0 140458 1 genus 1 85874 species Thermacetogenium phaeum 303 0 838 0 no rank 42857 2 533 0 44260 1 genus species Moorella thermoacetica 1 1525 0 533 genus 42837 1 0 305 42838 1 Ammonifex degensii species 0 305 1 423 91061 class Bacilli 119 0 303630 0 135270 1 259 1385 order Bacillales 264 no rank 539002 8 1926 0 1523 0 7 539742 no rank 0 1523 33986 1 7 Exiguobacterium genus 13 Exiguobacterium sibiricum species 332410 1 296 0 no rank 4 2644629 1021 0 322 0 1 360911 species Exiguobacterium sp. AT1b 269 0 species Exiguobacterium sp. ZWU0009 1 1224749 0 267 1 1849031 species Exiguobacterium sp. U13-1 species Exiguobacterium sp. MH3 1 1399115 163 0 193 0 132920 1 Exiguobacterium antarcticum species 403 0 1 539738 no rank genus 1 1378 403 0 2624949 1 no rank 403 0 0 403 species Gemella sp. oral taxon 928 1 1785995 9 1 9 186823 family Alicyclobacillaceae 2870 0 27 Alicyclobacillus genus 29330 2 1 664 0 0 637 405212 1 Alicyclobacillus acidocaldarius species 600 0 13 genus Kyrpidia 1 3 1129704 0 310 Kyrpidia tusciae species 33943 1 2055160 1 Kyrpidia sp. EA-1 species 277 0 14 432330 3 1 Tumebacillus genus 1597 0 643 0 Tumebacillus algifaecis species 1214604 1 940 0 1903704 1 Tumebacillus avium species 479 0 family 186824 3 474 0 6 1 2 1677050 genus Novibacillus 1 1471761 species Novibacillus thermophilus 468 0 1 292635 genus Laceyella 5 0 0 516 family 1 186821 663587 1 no rank 516 0 85683 1 [Bacillus] selenitireducens species 516 0 0 4265 186820 8 1 Listeriaceae family 3 1 2755 genus 320 0 Brochothrix thermosphacta species 2756 1 0 320 3942 0 20 1637 1 6 Listeria genus 1642 1 Listeria innocua species 0 522 1640 1 Listeria seeligeri species 0 456 1685 0 1639 1 Listeria monocytogenes species 0 620 species Listeria welshimeri 1 1643 species Listeria ivanovii 1 1638 0 639 1 25 186818 family Planococcaceae 6 0 8426 1 157226 1 2 Jeotgalibacillus genus 485 0 1 1508404 species Jeotgalibacillus malaysiensis 484 0 genus 1 648802 462 0 Rummeliibacillus stabekisii species 241244 1 462 0 958 0 3 1 3 648800 genus Solibacillus 0 381 no rank 1 2637870 Solibacillus sp. R5-41 species 2048654 1 0 381 574 0 76853 1 Solibacillus silvestris species 0 2126 1 5 1569 genus Sporosarcina 7 1084 0 species Sporosarcina ureae 1 1571 2 2647733 no rank 763 0 0 375 1930764 1 Sporosarcina sp. P33 species 388 0 species Sporosarcina sp. P37 1 1930546 272 0 1 1476 species Sporosarcina psychrophila 0 4000 Planococcus genus 1372 12 1 112 350 0 Planococcus plakortidis species 1038856 1 404 0 Planococcus donghaensis species 414778 1 Planococcus sp. L10.15 species 1302659 1 207 0 286 0 species Planococcus kocurii 1 1374 1215089 1 Planococcus halocryophilus species 307 0 0 328 161360 1 Planococcus antarcticus species 1 200991 species Planococcus rifietoensis 293 0 2 2662419 no rank 561 0 2058136 1 Planococcus sp. MB-3u-03 species 330 0 0 231 1 1526927 species Planococcus sp. PAMC 21323 Planococcus faecalis species 1598147 1 274 0 878 0 species Planococcus maritimus 1 192421 0 389 genus 1649 1 no rank 1 2644826 389 0 1750719 1 Kurthia sp. 11kri321 species 0 389 37750 0 82 Paenibacillaceae family 186822 1 45 85151 3 no rank 929 0 929 0 1 genus Aneurinibacillus 1 3 55079 no rank 2642329 1 488 0 1450761 1 Aneurinibacillus sp. XH2 species 488 0 440 0 species Aneurinibacillus soli 1 1500254 0 960 76632 1 genus 1 377615 species Thermobacillus composti 960 0 genus Paenibacillus 1 36 44249 336 0 33657 Paenibacillus yonginensis species 1462996 1 1070 0 0 1549 species Paenibacillus mucilaginosus 1 61624 no rank 13 185978 11738 0 1 481743 species Paenibacillus sp. Y412MC10 770 0 Paenibacillus sp. BIHB4019 species 1870819 1 0 922 1536772 1 Paenibacillus sp. FSL R7-0273 species 0 1355 1240 0 1 1536773 species Paenibacillus sp. FSL R7-0331 1 2069255 species Paenibacillus sp. lzh-N1 0 653 565 0 species Paenibacillus sp. FSL R5-0345 1 1536770 1054 0 species Paenibacillus sp. FSL H7-0357 1 1536774 0 352 1566358 1 Paenibacillus sp. IHBB 10380 species 653 0 1 1695218 species Paenibacillus sp. 32O-W species Paenibacillus sp. FSL H7-0737 1 1536775 615 0 1536769 1 Paenibacillus sp. FSL P4-0081 species 0 1372 species Paenibacillus sp. FSL R5-0912 1 1536771 0 1237 0 950 1 324057 species Paenibacillus sp. JDR-2 1616788 1 Paenibacillus bovis species 1015 0 169760 1 Paenibacillus stellifer species 1193 0 455 0 1763538 1 Paenibacillus crassostreae species 966 0 1870820 1 Paenibacillus ihbetae species 0 647 species Paenibacillus peoriae 1 59893 Paenibacillus sabinae species 365617 1 0 822 Paenibacillus graminis species 189425 1 0 1201 Paenibacillus terrae species 159743 1 725 0 632 0 species Paenibacillus swuensis 1 1178515 1 172713 species Paenibacillus kribbensis 576 0 0 1385 species Paenibacillus durus 1 44251 496 0 Paenibacillus larvae species 1464 1 1274 0 1 2044880 species group species Paenibacillus riograndensis 1 483937 0 1274 528191 1 Paenibacillus xylanexedens species 677 0 Paenibacillus odorifer species 189426 1 0 731 677 0 1 162209 species Paenibacillus naphthalenovorans 0 2260 1 1406 species Paenibacillus polymyxa 0 1137 414771 1 Paenibacillus donghaensis species 1126833 1 Paenibacillus beijingensis species 798 0 1297 0 1 160799 species Paenibacillus borealis 2122 0 7 Brevibacillus genus 55080 4 1 805 0 1 1465 species Brevibacillus laterosporus 0 527 54913 1 Brevibacillus formosus species species Brevibacillus brevis 1 1393 783 0 0 60871 186817 1 117 Bacillaceae family 127 1055323 1 genus 0 354 species Aeribacillus pallidus 1 33936 354 0 1 15 129337 genus Geobacillus 226 0 3935 209 0 1 129338 species Geobacillus subterraneus no rank 6 2642459 1093 0 Geobacillus sp. C56-T3 species 691437 1 124 0 92 0 1 544556 species Geobacillus sp. Y412MC61 550542 1 Geobacillus sp. Y412MC52 species 0 91 Geobacillus sp. Y4.1MC1 species 581103 1 0 379 species Geobacillus sp. GHH01 1 1233873 0 89 1 471223 species Geobacillus sp. WCH70 318 0 1 1422 species Geobacillus stearothermophilus 0 339 0 271 1 1921421 species Geobacillus genomosp. 3 species Geobacillus thermodenitrificans 1 33940 446 0 0 1351 species group 1505648 4 33941 1 Geobacillus thermoleovorans species 674 0 1 169283 species Geobacillus lituanicus 0 270 1 1462 species Geobacillus kaustophilus 216 0 191 0 Geobacillus thermocatenulatus species 33938 1 0 1725 genus Anoxybacillus 6 1 150247 3 294699 1 Anoxybacillus amylolyticus species 0 295 0 302 Anoxybacillus gonensis species 198467 1 534 0 1 33934 species Anoxybacillus flavithermus 591 0 2639704 2 no rank 259 0 species Anoxybacillus sp. B7M1 1 1490057 1490052 1 Anoxybacillus sp. B2M1 species 0 332 955 0 1 3 1 45667 genus Halobacillus 478 0 species Halobacillus mangrovi 1 402384 476 0 species Halobacillus halophilus 1 1570 0 3183 genus Lysinibacillus 1 5 400634 7 1145276 1 Lysinibacillus varians species 474 0 1 2636778 no rank 0 596 0 596 species Lysinibacillus sp. YS11 1 2072025 0 776 species Lysinibacillus fusiformis 1 28031 0 1330 1421 1 Lysinibacillus sphaericus species genus 5 2675234 2387 0 1 199441 species Bacillus krulwichiae 407 0 380 0 79885 1 Bacillus pseudofirmus species species Bacillus halodurans 1 86665 0 372 815 0 species Bacillus clausii 1 79880 413 0 species Bacillus lehensis 1 300825 0 482 1 175304 genus 0 482 Lentibacillus amyloliquefaciens species 1472767 1 7 459532 1 2 Terribacillus genus 389 0 0 382 586416 1 Terribacillus aidingensis species 1 182709 genus 0 818 818 0 1 182710 species Oceanobacillus iheyensis 0 39402 1 58 1386 genus Bacillus 2869 1479 1 Bacillus smithii species 0 373 species Bacillus megaterium 1 1404 1155 0 0 85 species Bacillus gibsonii 1 79881 Bacillus xiamenensis species 1178537 1 0 303 366 0 species Bacillus horikoshii 1 79883 4831 0 no rank 185979 19 389 0 1837130 1 Bacillus sp. FJAT-14266 species 2009331 1 Bacillus sp. MD-5 species 176 0 0 397 1 666686 species Bacillus sp. 1NLA3E 1856406 1 Bacillus sp. H15-1 species 381 0 2026248 1 Bacillus sp. 1s-1 species 0 381 0 68 species Bacillus sp. BH072 1 1570330 90 0 1628753 1 Bacillus sp. LM 4-2 species Bacillus sp. Pc3 species 1446792 1 183 0 1827146 1 Bacillus sp. IHB B 7164 species 439 0 species Bacillus sp. OxB-1 1 98228 350 0 169 0 Bacillus sp. JS species 1127744 1 61 0 1 2049935 species Bacillus sp. Lzh-5 176 0 563169 1 Bacillus sp. SJ-10 species 96 0 species Bacillus sp. (in: Bacteria) 1 1409 0 190 1 1941347 species Bacillus sp. 275 1774743 1 Bacillus sp. SDLI1 species 0 304 0 458 species Bacillus sp. X1(2014) 1 1565991 1 756828 species Bacillus sp. WP8 0 338 185 0 species Bacillus sp. YP1 1 1574141 1792192 1 species group 413 0 Bacillus altitudinis species 293387 1 0 413 0 514 species Bacillus infantis 1 324767 632773 1 Bacillus beveridgei species 0 457 1 561879 species Bacillus safensis 0 801 0 499 1471 1 Bacillus methanolicus species 0 653 species Bacillus glycinifermentans 1 1664069 1658 0 1 1408 species Bacillus pumilus 135735 1 Bacillus endophyticus species 0 612 12357 0 10 86661 species group 1428 1 Bacillus thuringiensis species 3433 0 0 4149 1396 1 Bacillus cereus species 1487 0 species Bacillus mycoides 1 1405 species Bacillus bombysepticus 1 658666 389 0 1 580165 species Bacillus cytotoxicus 0 401 0 381 Bacillus anthracis species 1392 1 no rank 2750818 3 0 1721 384 0 1892404 1 Bacillus sp. ABP14 species 0 456 Bacillus sp. FDAARGOS_235 species 1839798 1 Bacillus sp. HBCD-sjtu species 2053832 1 0 881 1 155322 species Bacillus toyonensis 0 396 445 0 Bacillus aryabhattai species 412384 1 Bacillus cohnii species 33932 1 0 367 1272 0 Bacillus flexus species 86664 1 1032 0 Bacillus coagulans species 1398 1 species Bacillus weihaiensis 1 1547283 538 0 species group 653685 9 7571 0 119858 1 Bacillus sonorensis species 588 0 596 0 1452 1 Bacillus atrophaeus species 1 1402 species Bacillus licheniformis 0 586 species Bacillus paralicheniformis 1 1648923 644 0 2767 0 Bacillus subtilis species 1423 1 1938374 3 species subgroup 0 2265 0 812 492670 1 Bacillus velezensis species 0 1154 Bacillus amyloliquefaciens species 1390 1 1 659243 species Bacillus siamensis 299 0 Bacillus vallismortis species 72361 1 0 125 Bacillus cellulosilyticus species 1413 1 0 231 0 462 1906945 1 2 Parageobacillus genus 1 1426 1 Parageobacillus thermoglucosidasius species 0 461 952 0 1 3 1 1329200 genus Fictibacillus 1221500 1 Fictibacillus phosphorivorans species 0 412 Fictibacillus arsenicus species 255247 1 539 0 1 351195 genus 351 0 0 351 Salimicrobium jeotgali species 1230341 1 1 29331 1 2 Amphibacillus genus 411 0 410 0 Amphibacillus xylanus species 1449 1 genus 2675230 2 0 1019 579 0 species Bacillus oceanisediminis 1 665099 Bacillus kochii species 859143 1 440 0 1257 0 genus 2 2675229 0 428 Bacillus muralis species 264697 1 1478 1 Bacillus simplex species 0 829 41 genus Virgibacillus 7 1 84406 2662 0 species Virgibacillus pantothenticus 1 1473 272 0 946 0 2620237 2 no rank 1 403957 species Virgibacillus sp. SK37 359 0 587 0 1 1911587 species Virgibacillus sp. 6R 405 0 1 1482 species Virgibacillus halodenitrificans 418 0 1 2017483 species Virgibacillus phasianinus 1 163877 species Virgibacillus necropolis 580 0 2010 family Staphylococcaceae 1 42 90964 17903 0 1 1 2 2005363 genus Auricoccucs 186 0 1849491 1 Auricoccus indicus species 185 0 0 1202 4 1 69965 genus Macrococcus 7 69966 1 Macrococcus caseolyticus species 0 624 1 1855823 species Macrococcus canis 270 0 no rank 1 2619255 301 0 Macrococcus sp. IME1552 species 1898474 1 301 0 0 14006 1279 1 33 Staphylococcus genus 792 Staphylococcus xylosus species 1288 1 553 0 29382 1 Staphylococcus cohnii species 474 0 377 0 1 29385 species Staphylococcus saprophyticus 473 0 species Staphylococcus sciuri 1 1296 Staphylococcus aureus species 1280 1 0 2120 259 0 1 61015 species Staphylococcus succinus 0 313 1 29384 species Staphylococcus kloosii 643214 1 Staphylococcus stepanovicii species 0 281 275 0 no rank 91994 1 1715860 1 Staphylococcus sp. AntiMn-1 species 275 0 Staphylococcus lutrae species 155085 1 0 261 331 0 28035 1 Staphylococcus lugdunensis species 0 193 Staphylococcus agnetis species 985762 1 Staphylococcus hominis species 1290 1 0 357 0 277 species Staphylococcus simulans 1 1286 1 246432 species Staphylococcus equorum 371 0 0 319 species Staphylococcus argenteus 1 985002 species Staphylococcus haemolyticus 1 1283 0 500 218 0 Staphylococcus muscae species 1294 1 species Staphylococcus warneri 1 1292 0 347 0 192 species Staphylococcus pettenkoferi 1 170573 1295 1 Staphylococcus schleiferi species 428 0 0 171 1 1284 species Staphylococcus hyicus 0 242 214473 1 Staphylococcus nepalensis species 295 0 308354 1 Staphylococcus simiae species Staphylococcus epidermidis species 1282 1 745 0 0 385 Staphylococcus condimenti species 70255 1 species Staphylococcus carnosus 1 1281 316 0 0 707 species Staphylococcus pseudintermedius 1 283734 0 217 Staphylococcus piscifermentans species 70258 1 0 307 Staphylococcus capitis species 29388 1 1 46127 species Staphylococcus felis 0 266 644 0 1 45972 species Staphylococcus pasteuri 1 2 1 45669 genus Salinicoccus 499 0 Salinicoccus halodurans species 407035 1 498 0 168241 0 1878 186826 1 163 Lactobacillales order 0 17550 Enterococcaceae family 81852 1 18 22 1 51668 genus 738 0 1 51669 species Tetragenococcus halophilus 0 738 276 0 33969 1 genus 33970 1 Melissococcus plutonius species 276 0 2737 3 1 Vagococcus genus 1 0 572 519472 1 Vagococcus teuberi species 0 326 633807 1 Vagococcus penaei species 0 245 15942 0 2312 1350 12 1 Enterococcus genus 485 0 Enterococcus hirae species 1354 1 0 331 Enterococcus casseliflavus species 37734 1 0 1127 2608891 3 no rank species Enterococcus sp. FDAARGOS_163 1 2060306 381 0 0 314 2057791 1 Enterococcus sp. CR-Ec1 species 432 0 2060307 1 Enterococcus sp. FDAARGOS_375 species Enterococcus faecalis species 1351 1 0 2442 1 53345 species Enterococcus durans 1072 0 species Enterococcus wangshanyuanii 1 2005703 565 0 Enterococcus mundtii species 53346 1 460 0 372 0 Enterococcus thailandicus species 417368 1 1352 1 Enterococcus faecium species 0 6776 0 25412 58 1 33958 family Lactobacillaceae 106 genus 3 2742598 0 1559 1 1598 species Lactobacillus reuteri 0 730 488 0 species Lactobacillus fermentum 1 1613 0 341 1 97478 species Lactobacillus mucosae 0 752 2767885 2 genus 28038 1 Lactobacillus curvatus species 0 359 0 393 1599 1 Lactobacillus sakei species 580 0 genus 2767876 1 species Lactobacillus amylophilus 1 1603 0 580 0 4288 4 2767887 genus 1 1623 species Lactobacillus ruminis 2138 0 320 0 species Lactobacillus acidipiscis 1 89059 species Lactobacillus salivarius 1 1624 1530 0 0 300 1601 1 Lactobacillus agilis species genus Pediococcus 6 1 1253 11 0 1487 1 1670797 species group 0 473 Pediococcus acidilactici species 1254 1 0 473 species Pediococcus damnosus 1 51663 217 0 Pediococcus pentosaceus species 1255 1 0 343 0 226 187452 1 Pediococcus claussenii species 217 0 species Pediococcus inopinatus 1 114090 genus 2 2767881 328 0 1 53444 species Lactobacillus lindneri 182 0 1 1625 species Lactobacillus sanfranciscensis 146 0 genus 6 2767879 0 1611 0 312 species Lactobacillus farciminis 1 1612 1 1602 species Lactobacillus alimentarius 228 0 276 0 1 1847728 species Lactobacillus allii 1 1007676 species Lactobacillus ginsenosidimutans 280 0 246 0 1 1074467 species Lactobacillus heilongjiangensis 0 269 Lactobacillus crustorum species 392416 1 2767842 3 genus 1197 0 1589 1 Lactobacillus pentosus species 0 399 198 0 1 60520 species Lactobacillus paraplantarum species Lactobacillus plantarum 1 1590 600 0 genus 1 2767877 241 0 species Lactobacillus kunkeei 1 148814 241 0 3 2759736 genus 2017 0 species Lactobacillus casei 1 1582 831 0 0 520 species Lactobacillus rhamnosus 1 47715 1 1597 species Lactobacillus paracasei 0 666 genus 2767886 3 0 819 1 267363 species Lactobacillus zymae 149 0 0 426 species Lactobacillus brevis 1 1580 Lactobacillus koreensis species 637971 1 0 244 genus 1 2767890 128 0 0 128 species Lactobacillus hokkaidonensis 1 1193095 1 2767892 genus 0 357 240427 1 Lactobacillus paracollinoides species 357 0 0 673 3 2767893 genus 1 1138822 species Lactobacillus curieae 216 0 152331 1 Lactobacillus parabuchneri species 168 0 Lactobacillus buchneri species 1581 1 0 289 1950 1 16 1578 genus Lactobacillus 8676 0 no rank 4 2620435 717 0 2099789 1 Lactobacillus sp. CBA3606 species 240 0 0 137 1 2099788 species Lactobacillus sp. CBA3605 122 0 species Lactobacillus sp. D1501 1 2108362 species Lactobacillus sp. wkB8 1 1545702 0 218 0 1330 1 33959 species Lactobacillus johnsonii 0 185 Lactobacillus amylolyticus species 83683 1 Lactobacillus helveticus species 1587 1 0 542 species Lactobacillus acidophilus 1 1579 459 0 species Lactobacillus kefiranofaciens 1 267818 0 135 278 0 Lactobacillus jensenii species 109790 1 species Lactobacillus amylovorus 1 1604 1045 0 639 0 species Lactobacillus gasseri 1 1596 1 52242 species Lactobacillus gallinarum 267 0 Lactobacillus delbrueckii species 1584 1 0 908 0 221 species Lactobacillus acetotolerans 1 1600 0 593 2 2767889 genus species Lactobacillus backii 1 375175 274 0 1610 1 Lactobacillus coryniformis species 319 0 0 297 no rank 1 263855 1993866 1 Lactobacillales bacterium species 0 297 0 2911 family Leuconostocaceae 1 17 81850 6 958 0 3 Weissella genus 46255 1 6 149 0 1 1249 species Weissella paramesenteroides species Weissella cibaria 1 137591 179 0 1631871 1 Weissella jogaejeotgali species 0 262 Weissella ceti species 759620 1 0 153 0 212 Weissella koreensis species 165096 1 46254 1 genus 201 0 1247 1 Oenococcus oeni species 0 201 1746 0 6 Leuconostoc genus 1243 9 1 species Leuconostoc carnosum 1 1252 231 0 160 0 species Leuconostoc lactis 1 1246 0 356 1 1244 species Leuconostoc gelidum 0 67 1 255248 species Leuconostoc garlicum 164 0 1 136609 species Leuconostoc kimchii 1245 1 Leuconostoc mesenteroides species 487 0 0 162 species Leuconostoc citreum 1 33964 2685106 1 no rank 113 0 Leuconostoc sp. C2 species 979982 1 113 0 2197 family Streptococcaceae 1 49 1300 115143 0 110098 0 3653 genus Streptococcus 43 1 1301 478 0 Streptococcus pseudopneumoniae species 257758 1 298 0 1 400065 species Streptococcus merionis 0 2996 Streptococcus parasanguinis species 1318 1 0 1614 1314 1 Streptococcus pyogenes species Streptococcus agalactiae species 1311 1 0 6859 671232 3 species group 21310 0 species Streptococcus anginosus 1 1328 9498 0 1338 1 Streptococcus intermedius species 2403 0 0 9409 1 76860 species Streptococcus constellatus 1 45634 species Streptococcus cristatus 0 740 0 1675 species Streptococcus thermophilus 1 1308 205 0 1888195 1 Streptococcus himalayensis species species Streptococcus parauberis 1 1348 0 514 1309 1 Streptococcus mutans species 370 0 150055 1 Streptococcus lutetiensis species 2013 0 0 372 Streptococcus macedonicus species 59310 1 300 0 1 1811193 species Streptococcus pantholopis 0 1073 species Streptococcus gallolyticus 1 315405 Streptococcus uberis species 1349 1 305 0 21430 0 1 1304 species Streptococcus salivarius Streptococcus pasteurianus species 197614 1 1122 0 1 1814128 species Streptococcus halotolerans 0 141 1093 0 species Streptococcus oralis 1 1303 Streptococcus gordonii species 1302 1 0 981 species group 2 119603 1280 0 0 349 species Streptococcus dysgalactiae 1 1334 0 931 species Streptococcus equi 1 1336 3045 0 species Streptococcus equinus 1 1335 0 293 species Streptococcus marmotae 1 1825069 no rank 2608887 7 0 10102 0 695 712633 1 Streptococcus sp. oral taxon 431 species species Streptococcus sp. I-G2 1 1156431 0 918 6347 0 Streptococcus sp. FDAARGOS_192 species 1839799 1 species Streptococcus sp. NPS 308 1 1902136 295 0 species Streptococcus sp. 'group B' 1 1319 0 323 0 897 Streptococcus sp. I-P16 species 1156433 1 1759399 1 Streptococcus sp. A12 species 0 627 Streptococcus infantarius species 102684 1 2177 0 species Streptococcus mitis 1 28037 0 1328 species Streptococcus pneumoniae 1 1313 1380 0 1 1346 species Streptococcus iniae 542 0 1326 1 Streptococcus acidominimus species 0 3157 Streptococcus suis species 1307 1 0 16327 82348 1 Streptococcus pluranimalium species 236 0 689 0 species Streptococcus sanguinis 1 1305 1357 5 1 Lactococcus genus 9 0 2848 Lactococcus piscium species 1364 1 0 235 0 241 Lactococcus raffinolactis species 1366 1 0 1806 Lactococcus lactis species 1358 1 1363 1 Lactococcus garvieae species 0 557 2296 0 2 Aerococcaceae family 186827 1 8 2294 0 32 1 7 1375 genus Aerococcus 1 1376 species Aerococcus urinae 0 495 species Aerococcus urinaeequi 1 51665 286 0 species Aerococcus christensenii 1 87541 0 572 species Aerococcus viridans 1 1377 0 438 0 263 1 119206 species Aerococcus sanguinicola 208 0 1 128944 species Aerococcus urinaehominis 1 family Carnobacteriaceae 11 1 186828 2754 0 3 Jeotgalibaca genus 1470540 1 3 828 0 0 513 species Jeotgalibaca dankookensis 1 708126 0 312 no rank 1 2621505 0 312 1903686 1 Jeotgalibaca sp. PTS2502 species 4 Marinilactibacillus genus 191769 2 1 297 0 293 0 no rank 1 2632303 1 1911586 species Marinilactibacillus sp. 15R 0 293 Carnobacterium genus 2747 1 5 3 0 1628 Carnobacterium inhibens species 147709 1 276 0 901 0 no rank 257487 2 0 338 1 1564681 species Carnobacterium sp. CP1 563 0 1 208596 species Carnobacterium sp. 17-4 1 2751 species Carnobacterium maltaromaticum 0 448 2 33974 no rank 672 0 1 genus Ndongobacter 1 2 1930845 672 0 1871025 1 Ndongobacter massiliensis species 0 671 1176 0 phylum 200930 9 1176 0 4 1 9 68337 class Deferribacteres 0 1172 order Deferribacterales 8 1 191393 2 1 Deferribacteraceae family 191394 1 7 1170 0 genus 1 2351 0 261 Flexistipes sinusarabici species 2352 1 0 261 0 372 Denitrovibrio genus 117999 1 2 1 species Denitrovibrio acetiphilus 1 118000 0 371 0 180 genus 545865 1 Calditerrivibrio nitroreducens species 477976 1 0 180 1 genus Deferribacter 2 1 53572 356 0 0 355 197162 1 Deferribacter desulfuricans species phylum 200918 38 5194 0 5194 0 5 188708 1 38 Thermotogae class 436 0 4 1643946 order family Kosmotogaceae 1 4 1643948 5 0 436 1 1184396 genus 0 198 1184387 1 Mesotoga prima species 198 0 0 233 651456 2 genus 0 143 1330330 1 Kosmotoga pacifica species 90 0 Kosmotoga olearia species 651457 1 1253 0 1 order Petrotogales 7 1 1643947 6 1643949 family 1252 0 Marinitoga genus 160798 1 3 6 0 890 441 0 Marinitoga piezophila species 149715 1 443 0 no rank 1 2640159 443 0 species Marinitoga sp. 1137 1 1545835 0 195 1 1511648 genus 1006576 1 Defluviitoga tunisiensis species 195 0 167 0 2 28236 1 2 Petrotoga genus 69499 1 Petrotoga mobilis species 165 0 order Thermotogales 1 26 2419 1 0 3500 3 9 1 1643950 family Fervidobacteriaceae 1500 0 2422 1 4 Fervidobacterium genus 2 0 564 0 137 Fervidobacterium pennivorans species 93466 1 231 0 2423 1 Fervidobacterium islandicum species 0 194 Fervidobacterium nodosum species 2424 1 0 933 2420 4 genus Thermosipho africanus species 2421 1 0 328 Thermosipho melanesiensis species 46541 1 271 0 334 0 2 2676525 no rank 167 0 1 1437364 species Thermosipho sp. 1070 167 0 1 1462747 species Thermosipho sp. 1063 family 188709 16 0 1999 2335 11 1 Thermotoga genus 30 0 1438 160 0 species Thermotoga profunda 1 1508420 1508419 1 Thermotoga caldifontis species 53 0 93930 1 Thermotoga naphthophila species 190 0 species Thermotoga maritima 1 2336 108 0 0 154 species Thermotoga petrophila 1 93929 species Thermotoga neapolitana 1 2337 182 0 0 561 2631113 4 no rank 116 0 126740 1 Thermotoga sp. RQ2 species 1 1157947 species Thermotoga sp. Cell2 0 128 0 174 Thermotoga sp. RQ7 species 126738 1 0 143 Thermotoga sp. 2812B species 1157948 1 8 1 5 1643951 genus Pseudothermotoga 561 0 Pseudothermotoga thermarum species 119394 1 0 177 1 57487 species Pseudothermotoga hypogea 161 0 111 0 species Pseudothermotoga lettingae 1 177758 0 104 1 38322 species Pseudothermotoga elfii 0 0 1 name