members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 3836949 8121 29 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321Klebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4619 0 3789818 1 Bacteria 4306 25 superkingdom 2 no rank 2323 3 523 0 0 523 3 clade 1783234 2 clade 95901 0 462 class 2497643 2 462 0 2 2497644 order 0 462 2497645 family 2 462 0 462 1 0 6 genus 1551504 Candidatus Babela 2 Candidatus Babela massiliensis 1 species 673862 0 456 0 61 1 95818 phylum 1 no rank 1895827 0 61 61 0 2056494 species 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 14508 0 203691 phylum 58 203692 class 30 58 Spirochaetia 1 14508 0 0 2147 9 1643688 order 0 1 2147 Leptospiraceae 9 family 26 170 Leptospira 6 5 genus 171 0 1965 1 28452 species 1 Leptospira alstonii 187 0 Leptospira biflexa 1 species 172 0 345 1 Leptospira borgpetersenii 174 species 0 357 1 Leptospira interrogans 173 species 0 840 Leptospira santarosai 1 species 28183 0 231 Turneriella 2 1 genus 338321 0 156 1 29510 species 1 Turneriella parva 155 0 0 9057 1 Spirochaetales 41 42 order 136 0 1 3028 Spirochaetaceae 23 family 26 137 0 568 1 genus 1616789 1 Salinispira pacifica 1307761 species 0 568 genus 19 157 Treponema 12 1 1658 0 1 Treponema brennaborense 81028 species 0 101 150829 species 1 Treponema azotonutricium 121 0 species 158 Treponema denticola 1 192 0 Treponema putidum 1 species 221027 0 219 53435 species 1 Treponema paraluiscuniculi 66 0 0 170 Treponema pedis 1 species 409322 160 species 1 Treponema pallidum 53 0 1 Treponema primitia 88058 species 0 236 0 110 1 no rank 2638727 species 1539298 Treponema sp. OMZ 838 1 110 0 1 Treponema succinifaciens 167 species 0 210 Treponema caldarium 1 species 215591 0 161 4 Sphaerochaeta 399320 2 genus 0 304 1 Sphaerochaeta pleomorpha 1 species 1131707 0 109 1 Sphaerochaeta coccoides 273376 species 0 109 1 Sphaerochaeta globosa 1131703 species 0 84 170 1 0 1911556 1 genus 2 Sediminispirochaeta 55206 species 1 Sediminispirochaeta smaragdinae 169 0 Spirochaeta 3 genus 3 146 0 1 302 1 Spirochaeta thermophila 154 species 0 154 145 0 46355 species 1 Spirochaeta africana 14 family 1643685 Borreliaceae 17 5987 1 0 0 1 3513 8 Borrelia 138 genus 86 44449 species 1 Borrelia recurrentis 520 0 674 0 47466 species 1 Borrelia miyamotoi 1 Borrelia turicatae 142 species 0 317 1 Borrelia hermsii 140 species 0 316 0 307 Borrelia parkeri 1 species 141 1 Borrelia anserina 143 species 0 234 1059 0 species 40834 Borrelia duttonii 1 0 2460 1 Borreliella 8 147 genus 64895 0 356 Borreliella burgdorferi 1 species 139 1 Borreliella bavariensis 664662 species 0 244 species 29518 Borreliella afzelii 1 329 0 305 0 1674146 species 1 Borrelia mayonii species 64897 Borreliella bissettii 1 294 0 Borreliella garinii 1 species 29519 0 548 237 0 62088 species 1 Borreliella valaisiana 0 3274 1 7 Brachyspirales 1643686 12 order 6 Brachyspiraceae 143786 family 3 0 1 3262 1 3259 0 genus 18 29521 Brachyspira 5 0 730 1 Brachyspira intermedia 84377 species 84378 species 1 Brachyspira murdochii 720 0 species 52584 Brachyspira pilosicoli 1 1010 0 Brachyspira hyodysenteriae 1 species 159 0 781 5 68297 phylum 0 970 203486 class 5 970 0 1 970 0 203487 order 3 5 Dictyoglomales 2 family 203488 Dictyoglomaceae 4 967 1 0 965 1 0 13 9 genus 3 Dictyoglomus 0 479 Dictyoglomus thermophilum 1 species 14 species 513050 Dictyoglomus turgidum 1 477 0 4 200938 phylum 0 167 0 167 4 118001 class 1 167 0 189769 order 5 4 Chrysiogenales 189770 5 family 3 Chrysiogenaceae 162 1 0 1 157 0 393029 genus 2 2 Desulfurispirillum 155 0 species 936456 Desulfurispirillum indicum 1 3 2138240 phylum 0 131 131 0 2138243 class 3 Coprothermobacterales 3 2 order 2138246 0 131 1 family 2138247 2 129 0 2 Coprothermobacter 68335 1 genus 0 129 1 Coprothermobacter proteolyticus 1 species 35786 0 128 0 1695 14 40117 phylum 203693 11 class 14 Nitrospira 1695 1 0 9 order 189778 Nitrospirales 13 1684 1 0 1 1675 0 family 6 189779 Nitrospiraceae 12 genus 3 1234 Nitrospira 5 1 475 0 1325564 species 1 Nitrospira japonica 100 0 0 192 1 Nitrospira moscoviensis 42253 species Candidatus Nitrospira inopinata 1 species 1715989 0 76 Nitrospira defluvii 1 species 330214 0 104 28261 genus 4 2 Thermodesulfovibrio 1 820 0 0 816 Thermodesulfovibrio yellowstonii 1 species 28262 0 374 1 Leptospirillum 4 2 genus 179 1 species group 261385 0 114 1 Leptospirillum sp. Group II 'CF-1' 1660083 species 0 114 0 133 1 261386 species group Leptospirillum ferriphilum 1 species 178606 0 133 655606 species group 1 125 0 125 0 species 180 Leptospirillum ferrooxidans 1 143624 0 1783270 clade 363 0 370 1 456828 phylum 370 0 genus 456826 1 456827 species 1 Candidatus Cloacimonas acidaminovorans 370 0 1003 0 142182 phylum 8 class 1 219685 Gemmatimonadetes 8 1 1003 0 0 1 1002 7 Gemmatimonadales 219686 order 1 family 13 219687 Gemmatimonadaceae 6 1 1001 0 173479 3 genus 3 Gemmatimonas 445 1 0 species 173480 Gemmatimonas aurantiaca 1 233 0 species 1379270 Gemmatimonas phototrophica 1 209 0 1 543 0 1706036 genus 3 2 Gemmatirosa 0 540 Gemmatirosa kalamazoonesis 1 species 861299 484 0 65842 phylum 4 1 484 0 204430 class 2 4 Fibrobacteria 0 1 482 3 Fibrobacterales 218872 order 1 2 Fibrobacteraceae 204431 family 2 0 1 481 genus 832 1 479 0 species 833 Fibrobacter succinogenes 1 479 0 141767 0 clade 68336 350 0 1258 7 1134404 phylum 1258 1 0 1 class 795747 Ignavibacteria 7 6 Ignavibacteriales 795748 order 4 0 1 1257 1033 1 0 795749 1 family 3 Ignavibacteriaceae 0 1 1032 Ignavibacterium 2 genus 4 795750 0 1028 1 Ignavibacterium album 591197 species 1334117 family 2 220 0 220 1 0 1134403 4 genus 2 Melioribacter species 1134405 Melioribacter roseus 1 216 0 976 phylum 20 323 Bacteroidetes 1 138000 0 0 1 10211 Bacteroidia 65 class 17 200643 0 1 8139 55 Bacteroidales 171549 order 31 family 1853231 1 245 0 1 283168 genus 0 245 28118 species 1 Odoribacter splanchnicus 245 0 1606 0 333046 no rank 5 770 0 genus 909656 3 376805 species 1 Bacteroides salanitronis 388 0 197 0 species 357276 Bacteroides dorei 1 1 Bacteroides vulgatus 821 species 0 185 Candidatus Azobacteroides 2 3 genus 511434 0 836 1 511435 species 1 Candidatus Azobacteroides pseudotrichonymphae 833 0 167 0 185291 no rank 1 Bacteroidales bacterium CF 1 species 1400053 0 167 699 1 0 1 family 2005525 Tannerellaceae 7 1 genus 195950 Tannerella 3 288 1 0 0 141 1 Tannerella forsythia 28112 species 146 0 no rank 2620507 1 1 Tannerella sp. oral taxon HOT-286 712710 species 0 146 375288 genus 3 3 Parabacteroides 1 410 0 214 0 2649774 no rank 1 214 0 species 2025876 Parabacteroides sp. CT06 1 0 193 1 Parabacteroides distasonis 823 species 171552 1 family 11 Prevotellaceae 1673 1 0 10 Prevotella 838 genus 7 0 1 1672 Prevotella intermedia 1 species 28131 0 487 60 0 28129 species 1 Prevotella denticola 228 0 no rank 2638335 1 species 652716 Prevotella sp. oral taxon 299 1 228 0 134 0 species 589436 Prevotella fusca 1 94 0 species 76123 Prevotella enoeca 1 148 0 52227 species 1 Prevotella dentalis 0 196 1 Prevotella ruminicola 839 species Prevotella jejuni 1 species 1177574 0 154 0 164 1 Prevotella melaninogenica 28132 species 2005520 family 5 669 0 2 genus 1784836 Fermentimonas 2 389 1 0 387 0 1562970 species 1 Fermentimonas caenicola 0 1 189 Proteiniphilum 2 genus 4 294702 1642647 species 1 Proteiniphilum saccharofermentans 185 0 307628 genus 1 91 0 Petrimonas mucosa 1 species 1642646 0 91 family 1 2005523 Paludibacteraceae 3 1 421 0 420 1 0 346096 1 genus 2 Paludibacter species 185300 Paludibacter propionicigenes 1 419 0 2005519 1 family 3 Barnesiellaceae 98 1 0 Barnesiella 2 genus 1 397864 0 1 97 0 96 Barnesiella viscericola 1 species 397865 1 1971 0 815 family 3 11 Bacteroidaceae 0 1968 1 Bacteroides 10 24 genus 816 species 47678 Bacteroides caccae 1 161 0 209 0 1796613 species 1 Bacteroides caecimuris 0 82 1 Bacteroides zoogleoformans 28119 species 0 142 1 Bacteroides helcogenes 290053 species Bacteroides cellulosilyticus 1 species 246787 0 250 165 0 28113 species 1 Bacteroides heparinolyticus 0 371 1 Bacteroides fragilis 817 species species 28116 Bacteroides ovatus 1 259 0 0 305 Bacteroides thetaiotaomicron 1 species 818 1 321 0 171551 family 1 4 Porphyromonadaceae 0 320 1 3 Porphyromonas 836 3 genus 0 223 Porphyromonas gingivalis 1 species 837 94 0 28123 species 1 Porphyromonas asaccharolytica 1 family 171550 Rikenellaceae 3 238 1 0 112 0 1611681 genus 1 112 0 1433126 species 1 Mucinivorans hirudinis 125 0 genus 239759 1 species 214856 Alistipes finegoldii 1 125 0 1970189 order 6 9 Marinilabiliales 1 2055 0 423 0 558415 family 2 423 1 0 1193324 5 genus 2 Alkalitalea species 889453 Alkalitalea saponilacus 1 418 0 693 0 1573805 family 1 1 2060722 genus 0 693 Marinifilaceae bacterium SPP2 1 species 1717717 0 693 0 500 2 1471398 family 0 1 500 Draconibacterium 2 genus 2 1471399 0 498 Draconibacterium orientale 1 species 1168034 433 1 0 1970190 3 family 3 Salinivirgaceae 2 Salinivirga 1970191 1 genus 0 430 1 429 0 1307839 species 1 Salinivirga cyanobacteriivorans order 7 1100069 Bacteroidetes Order II. Incertae sedis 6 1 788 0 1 781 0 family 8 563843 Rhodothermaceae 5 0 254 1 146918 genus species 146919 Salinibacter ruber 1 254 0 no rank 1196022 1 293 0 0 293 1 Rhodothermaceae bacterium RA 1779382 species 2 Rhodothermus 29548 2 genus 0 226 1 224 0 29549 species 1 Rhodothermus marinus 20 class 768503 Cytophagia 60 19355 1 0 0 19335 1 Cytophagales 59 54 order 768507 Bernardetiaceae 3 family 5 1937968 0 1 1254 1249 1 0 15 genus 1937972 Bernardetia 2 1234 0 999 species 1 Bernardetia litoralis 0 1 3341 16 Hymenobacteraceae 1853232 family 3 3 Pontibacter 323449 5 genus 0 490 1 1 Pontibacter korlensis 400092 species 0 293 species 388950 Pontibacter akesuensis 1 192 0 983 1 0 1379908 5 genus 4 Rufibacter no rank 2639626 2 620 0 0 265 Rufibacter sp. DG15C 1 species 1379909 species 1379910 Rufibacter sp. DG31D 1 355 0 Rufibacter tibetensis 1 species 512763 0 358 genus 16 89966 Hymenobacter 8 1 1865 0 1 Hymenobacter sedentarius 1411621 species 0 260 1 Hymenobacter swuensis 1446467 species 0 272 2615202 no rank 5 1317 0 1484116 species 1 Hymenobacter sp. PAMC 26554 465 0 122 0 1385663 species 1 Hymenobacter sp. DG25A 191 0 species 1356852 Hymenobacter sp. APR13 1 377 0 1484118 species 1 Hymenobacter sp. PAMC 26628 Hymenobacter sp. DG25B 1 species 1385664 0 162 family 4 89373 Cytophagaceae 15 1 4179 0 0 159 1 genus 861914 159 0 2620963 no rank 1 159 0 species 1834519 Fibrella sp. ES10-3-2-2 1 Cytophaga 2 genus 3 978 0 1 588 0 585 1 Cytophaga hutchinsonii 985 species 360 1 0 319458 2 genus 2 Leadbetterella 0 358 1 Leadbetterella byssophila 316068 species 2 Dyadobacter 120831 4 genus 0 280 1 1 Dyadobacter fermentans 94254 species 0 276 1341 0 105 genus 1 0 1341 1 Runella slithyformis 106 species 0 1447 1 6 Spirosoma 107 14 genus 2057025 species 1 Spirosoma sp. HA7 270 0 Spirosoma rigui 1 species 564064 0 166 324 0 1379870 species 1 Spirosoma radiotolerans 0 376 1 Spirosoma aerolatum 1211326 species species 1178516 Spirosoma montaniterrae 1 297 0 0 2892 1 Cyclobacteriaceae 10 11 family 563798 813 1 0 232244 13 genus 2 Belliella 232259 species 1 Belliella baltica 800 0 15 genus 390846 Echinicola 2 333 1 0 390884 species 1 Echinicola vietnamensis 318 0 246875 3 genus 2 Algoriphagus 413 1 0 1 Algoriphagus sp. M8-2 1727163 species 0 410 1 1322 0 68288 genus 6 3 Cyclobacterium 320787 species 1 Cyclobacterium amurskyense 666 0 0 650 1 Cyclobacterium marinum 104 species 0 5496 1 Flammeovirgaceae 4 1 family 200667 1 1510 0 genus 12 59739 Flammeovirga 2 0 1498 1 no rank 2637820 species 1191459 Flammeovirga sp. MY04 1 1498 0 3985 0 no rank 340671 1 0 3985 1 Flammeovirgaceae bacterium 311 1257021 species 0 1 466 5 Amoebophilaceae 1501348 family 9 2 genus 273135 Candidatus Cardinium 2 150 1 0 148 0 no rank 2641185 1 148 0 249402 species 1 Cardinium endosymbiont of Encarsia pergandiella 0 1 307 2 Candidatus Amoebophilus 281119 genus 2 0 305 1 Candidatus Amoebophilus asiaticus 281120 species 1006 0 family 2762301 2 1 1006 0 869806 genus 9 2 Marivirga 997 0 1006 species 1 Marivirga tractuosa 647 1 0 1853234 2 family 3 Persicobacteraceae 0 645 1 Persicobacter 2 11 genus 59740 1 2664020 no rank 0 634 0 634 Persicobacter sp. JZB09 1 species 1085624 0 849 5 class 1937959 5 Saprospirales 1936988 4 order 0 849 1 0 559 2 family 1937961 0 559 1 Haliscomenobacter 2 1 genus 2349 species 2350 Haliscomenobacter hydrossis 1 558 0 2 family 89374 0 286 286 1 0 1 genus 1007 Saprospira 2 1008 species 1 Saprospira grandis 285 0 Chitinophagia 15 class 4 1853228 0 1 3076 1 3072 0 1853229 order 10 14 Chitinophagales 1 3062 0 family 26 563835 Chitinophagaceae 13 533 1 0 398041 4 genus 2 Flavisolibacter 1 Flavisolibacter tropicus 1492898 species 0 529 1 genus 354354 Niastella 2 744 1 0 species 354356 Niastella koreensis 1 743 0 1 genus 1769012 Arachidicoccus 2 423 1 0 422 0 no rank 2636138 1 422 0 species 1850526 Arachidicoccus sp. BS20 1 1 649460 genus 0 272 species 477680 Filimonas lacunae 1 272 0 1 485 0 genus 5 379899 Niabella 3 216 0 446683 species 1 Niabella soli species 1176587 Niabella ginsenosidivorans 1 264 0 579 0 genus 79328 2 0 311 Chitinophaga pinensis 1 species 79329 species 2029983 Chitinophagaceae bacterium 13 1 268 0 147 Flavobacteriia 117743 class 64 0 1 94962 200644 131 order 146 Flavobacteriales 94898 1 0 246874 family 1 Cryomorphaceae 2 0 21 2762318 family 0 11249 0 1 3768 Elizabethkingia 6 genus 31 308865 0 1207 Elizabethkingia anophelis 1 species 1117645 0 655 1 Elizabethkingia genomosp. 3 1756149 species 518 0 1756150 species 1 Elizabethkingia genomosp. 4 species 238 Elizabethkingia meningoseptica 1 594 0 1 Elizabethkingia miricola 172045 species 0 763 949 1 0 34084 2 genus 2 Riemerella 1 Riemerella anatipestifer 34085 species 0 947 Ornithobacterium 2 1 genus 28250 0 378 1 28251 species 1 Ornithobacterium rhinotracheale 377 0 5719 0 no rank 2782232 10 1 genus 2782228 0 281 0 281 Chryseobacterium taklimakanense 1 species 536441 1 5438 0 59732 genus 27 9 Chryseobacterium 0 1859 3 no rank 2593645 species 1721091 Chryseobacterium sp. IHB B 17019 1 534 0 670 0 species 2015076 Chryseobacterium sp. T16E-39 1 655 0 878220 species 1 Chryseobacterium sp. StRB126 species 1324352 Chryseobacterium gallinarum 1 380 0 0 234 1 Chryseobacterium camelliae 1265445 species 0 661 Chryseobacterium piperi 1 species 558152 Chryseobacterium indologenes 1 species 253 0 1027 0 1250 Chryseobacterium glaciei 1 species 1685010 1 1013 genus 0 435 1014 species 1 Weeksella virosa 435 0 2 family 1333713 0 498 0 1 498 2 Owenweeksia 267986 genus 17 species 253245 Owenweeksia hongkongensis 1 481 0 0 580 1 Ichthyobacteriaceae 3 3 family 1755828 2 Ichthyobacterium 1755829 genus 12 0 1 577 242600 species 1 Ichthyobacterium seriolicida 565 0 102 Flavobacteriaceae 49546 family 310 0 1 76700 5474 1 0 12 genus 104267 Tenacibaculum 5 669041 species 1 Tenacibaculum dicentrarchi 1117 0 584609 species 1 Tenacibaculum jejuense 1758 0 1521 0 species 1850252 Tenacibaculum todarodis 1 Tenacibaculum maritimum 1 species 107401 0 1066 genus 417127 1 1479 0 0 1479 Zunongwangia profunda 1 species 398743 0 1161 1 genus 1518147 1161 0 1790137 species 1 Wenyingzhuangia fucanilytica 153265 genus 1 2 Aequorivita 1 718 0 101385 species 1 Aequorivita sublithincola 717 0 725 0 genus 178469 1 species 616991 Arenibacter algicola 1 725 0 2 Lutibacter 358023 genus 3 0 1 1667 species 1622118 Lutibacter profundi 1 1664 0 30 genus 237 Flavobacterium 9 8868 1 0 0 820 Flavobacterium gilvum 1 species 1492737 880 0 55197 species 1 Flavobacterium branchiophilum species 986 Flavobacterium johnsoniae 1 2182 0 species 312277 Flavobacterium indicum 1 1211 0 0 1674 1 Flavobacterium columnare 996 species 1306519 species 1 Flavobacterium commune 688 0 535 0 1763534 species 1 Flavobacterium crassostreae 848 0 96345 species 1 Flavobacterium psychrophilum 0 479 1 1176327 genus 479 0 2636237 no rank 1 species 2094025 Aureitalea sp. RR4-38 1 479 0 1 genus 1204360 0 1287 1287 0 species 762954 Siansivirga zeaxanthinifaciens 1 1 2399 0 326319 genus 20 4 Dokdonia species 326320 Dokdonia donghaensis 1 904 0 0 1475 2 no rank 2615033 765 0 species 313590 Dokdonia sp. MED134 1 983548 species 1 Dokdonia sp. 4H-3-7-5 710 0 3635 1 0 28 genus 252356 Maribacter 5 species 1178778 Maribacter cobaltidurans 1 509 0 3098 0 no rank 2615042 3 species 1644130 Maribacter sp. 1_2014MBL_MicDiv 1 1202 0 species 1836467 Maribacter sp. T28 1 1079 0 species 313603 Maribacter sp. HTCC2170 1 817 0 1 216431 genus 0 1067 Croceibacter atlanticus 1 species 313588 0 1067 76 genus 363408 Nonlabens 5 3231 1 0 0 1572 2 2615035 no rank 2058134 species 1 Nonlabens sp. MB-3u-79 731 0 1476901 species 1 Nonlabens sp. MIC269 841 0 species 328515 Nonlabens dokdonensis 1 748 0 1 Nonlabens sediminis 319236 species 0 835 0 917 1 genus 393005 917 0 species 2069432 Tamlana sp. UJ94 1 1 genus 83612 Psychroflexus 2 1057 1 0 1056 0 57029 species 1 Psychroflexus torquis 4423 1 0 42 genus 291183 Lacinutrix 4 1 Lacinutrix venerupis 1486034 species 0 1431 2647285 no rank 2 2950 0 1436 0 species 983544 Lacinutrix sp. 5H-3-7-4 1 2057808 species 1 Lacinutrix sp. Bg11-31 1514 0 Sediminicola 2 genus 1 389486 0 1 496 no rank 2648869 1 495 0 495 0 species 1453352 Sediminicola sp. YIK13 1 Cellulophaga 4 13 genus 104264 0 4091 1 1 Cellulophaga baltica 76594 species 0 1314 1250 0 59600 species 1 Cellulophaga algicola species 979 Cellulophaga lytica 1 1514 0 Gramella 5 10 genus 292691 0 2147 1 568 0 1913577 species 1 Gramella sp. LPB0144 0 524 1 Gramella sp. SH35 2126553 species 1 Gramella forsetii 411153 species 0 675 1 Gramella flava 1486245 species 0 370 1364 0 genus 1649495 1 1 2622645 no rank 0 1364 0 1364 Seonamhaeicola sp. S2-3 1 species 1936081 1 252306 genus 0 185 252307 species 1 Robiginitalea biformata 185 0 61432 no rank 2 1357 0 1 Flavobacteriaceae bacterium 3519-10 531844 species 0 220 1150389 species 1 Flavobacteriaceae bacterium UJ101 1137 0 0 2810 1 Winogradskyella 3 17 genus 286104 0 2793 2 2615021 no rank 754409 species 1 Winogradskyella sp. PG-2 1496 0 1 Winogradskyella sp. J14-2 1936080 species 0 1297 261827 genus 1 1456 0 0 1456 Algibacter alginicilyticus 1 species 1736674 59 genus 76831 Myroides 5 2508 1 0 no rank 2642485 2 1200 0 1 Myroides sp. A21 1583100 species 0 613 species 1458492 Myroides sp. ZB35 1 587 0 480520 species 1 Myroides profundi 617 0 Myroides odoratimimus 1 species 76832 0 632 143222 genus 1 773 0 0 773 1 no rank 2633436 Salegentibacter sp. T436 1 species 1729720 0 773 3 Muricauda 111500 5 genus 0 988 1 593 0 species 111501 Muricauda ruestringensis 1 390 0 516051 species 1 Muricauda lutaonensis genus 112040 1 339 0 Zobellia galactanivorans 1 species 63186 0 339 genus 2700084 1 1770 0 0 1770 1 Lutibacter sp. LPB0138 1850246 species genus 1209327 1 1156 0 species 1803846 Flavivirga eckloniae 1 1156 0 0 1 1955 Formosa 3 genus 8 225842 2 2644710 no rank 0 1947 816 0 1336794 species 1 Formosa sp. Hel1_33_131 species 1336795 Formosa sp. Hel3_A1_48 1 1131 0 5077 1 0 50 genus 1016 Capnocytophaga 15 species 1018 Capnocytophaga ochracea 1 328 0 1 Capnocytophaga gingivalis 1017 species 0 286 Capnocytophaga haemolytica 1 species 45243 0 226 1 Capnocytophaga stomatis 1848904 species 0 345 327575 species 1 Capnocytophaga leadbetteri 240 0 1 Capnocytophaga cynodegmi 28189 species 0 451 518 0 28188 species 1 Capnocytophaga canimorsus 0 1928 6 2640652 no rank 0 346 1 Capnocytophaga sp. H2931 1945657 species species 1316596 Capnocytophaga sp. oral taxon 878 1 369 0 252 0 209053 species 1 Capnocytophaga sp. ChDC OS43 0 272 Capnocytophaga sp. oral taxon 864 1 species 1316593 0 280 1 Capnocytophaga sp. oral taxon 323 1705617 species 0 409 1 Capnocytophaga sp. H4358 1945658 species 705 0 1019 species 1 Capnocytophaga sputigena 0 1133 1 336276 genus no rank 2615019 1 1133 0 Olleya sp. Bg11-27 1 species 2058135 0 1133 genus 52 52959 Polaribacter 6 1 8198 0 0 1884 Polaribacter reichenbachii 1 species 996801 4404 0 no rank 196858 3 1 Polaribacter sp. BM10 1529069 species 0 1527 1 Polaribacter sp. MED152 313598 species 0 1681 1 Polaribacter sp. ALD11 2058137 species 0 1196 1858 0 species 1774273 Polaribacter vadi 1 0 1250 4 no rank 313602 2 Candidatus Walczuchella 1940138 1 genus 0 225 1 Candidatus Walczuchella monophlebidarum 1 species 1415657 0 224 1 genus 336809 Candidatus Sulcia 2 1025 1 0 Candidatus Sulcia muelleri 1 species 336810 0 1024 1 3916 0 family 6 39782 Blattabacteriaceae 10 9 Blattabacterium 34098 18 genus 0 3910 1 no rank 2647581 6 2843 0 441 0 species 39768 Blattabacterium sp. (Mastotermes darwiniensis) 1 517 0 species 1316444 Blattabacterium sp. (Nauphoeta cinerea) 1 0 505 1 Blattabacterium sp. (Blattella germanica) 624186 species 0 428 1 Blattabacterium sp. (Periplaneta americana) 367488 species 1 Blattabacterium sp. (Blatta orientalis) 367806 species 0 424 1 Blattabacterium sp. (Blaberus giganteus) 1186051 species 0 528 Blattabacterium punctulatus 1 species 164514 0 567 1 Blattabacterium cuenoti 1653831 species 0 482 572 0 1853230 family 2 1 572 0 genus 4 332102 Fluviicola 2 568 0 species 191579 Fluviicola taffensis 1 Sphingobacteriia 24 class 6 117747 0 1 8739 0 1 8733 Sphingobacteriales 23 order 11 200666 22 Sphingobacteriaceae 84566 family 19 0 1 8722 0 1356 1 84568 no rank Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 species 1986952 0 1356 2 Solitalea 929509 genus 3 0 1 547 995 species 1 Solitalea canadensis 544 0 0 2129 1 Sphingobacterium 6 9 genus 28453 1010 species 1 Sphingobacterium mizutaii 379 0 2609468 no rank 4 1741 0 420 0 species 2003121 Sphingobacterium sp. G1-14 1 species 743722 Sphingobacterium sp. 21 1 379 0 406 0 1933220 species 1 Sphingobacterium sp. B29 0 536 1 Sphingobacterium sp. ML3W 1538644 species Pedobacter 6 genus 12 84567 0 1 2828 0 424 1 Pedobacter steynii 430522 species 0 599 Pedobacter ginsengisoli 1 species 363852 species 984 Pedobacter heparinus 1 525 0 0 644 Pedobacter cryoconitis 1 species 188932 624 0 no rank 2628915 1 624 0 species 1727164 Pedobacter sp. PACM 27299 1 0 1 579 2 Pseudopedobacter 1649482 genus 3 576 0 species 151895 Pseudopedobacter saltans 1 1 1264 0 genus 5 423349 Mucilaginibacter 4 297 0 2617802 no rank 1 1 Mucilaginibacter sp. PAMC 26640 1300914 species 0 297 595 0 1550579 species 1 Mucilaginibacter gotjawali 1 Mucilaginibacter sp. BJC16-A31 1234841 species 0 367 2509 0 1090 phylum 20 0 1 2509 Chlorobia 20 class 13 191410 0 1 2496 Chlorobiales 19 order 19 191411 0 1 2477 Chlorobiaceae 18 family 19 191412 1 336 0 256319 genus 31 4 Chlorobaculum 1 Chlorobaculum tepidum 1097 species 0 93 Chlorobaculum parvum 1 species 274539 0 100 274537 species 1 Chlorobaculum limnaeum 112 0 7 no rank 274493 0 1447 genus 25 1091 Chlorobium 5 1 1186 0 species 1096 Chlorobium phaeobacteroides 1 591 0 Chlorobium limicola 1 species 1092 0 262 species 337090 Chlorobium chlorochromatii 1 202 0 species 1094 Chlorobium phaeovibrioides 1 106 0 0 261 2 genus 1099 0 183 1 Pelodictyon phaeoclathratiforme 34090 species 0 78 1 Pelodictyon luteolum 1100 species 204 0 100715 genus 1 204 0 100716 species 1 Chloroherpeton thalassium 0 471 1 Prosthecochloris 5 26 genus 1101 1 Prosthecochloris aestuarii 1102 species 0 123 0 322 3 2632826 no rank species 1868325 Prosthecochloris sp. CIB 2401 1 102 0 0 128 1 Prosthecochloris sp. HL-130-GSB 1974213 species 281093 species 1 Prosthecochloris sp. GSB1 92 0 clade 1783272 1610 2782264 0 200795 1 phylum 38 Chloroflexi 2613 1 0 0 1 294 Anaerolineae 7 class 5 292625 0 289 1 Anaerolineales 6 3 order 292629 286 1 0 292628 2 family 5 Anaerolineaceae 1 1324991 no rank 0 75 75 0 species 1889813 Anaerolineaceae bacterium oral taxon 439 1 0 88 1 genus 233189 88 0 species 167964 Anaerolinea thermophila 1 genus 1 2019482 Brevefilum 2 1 121 0 120 0 1986204 species 1 Brevefilum fermentans 32061 class 2 11 Chloroflexia 1 1027 0 1025 1 0 32064 9 order 10 Chloroflexales 1508594 suborder 5 625 0 Chloroflexaceae 5 family 2 1106 0 1 625 623 1 0 7 genus 1107 Chloroflexus 4 0 328 1 Chloroflexus aggregans 152260 species 288 1 0 144 species 1108 Chloroflexus aurantiacus 2 strain 480224 Chloroflexus sp. Y-400-fl 1 144 0 391 0 suborder 1508595 4 0 391 1 4 Roseiflexaceae 1508635 2 family 389 1 0 120961 1 genus 3 Roseiflexus 120962 species 1 Roseiflexus castenholzii 204 0 1 2609473 no rank 0 184 184 0 357808 species 1 Roseiflexus sp. RS-1 1 421 0 301297 class 3 7 Dehalococcoidia 670486 genus 2 136 0 552810 species 1 Dehalogenimonas lykanthroporepellens 54 0 1 Dehalogenimonas formicexedens 1839801 species 0 82 order 1202465 4 282 0 family 1 1202464 Dehalococcoidaceae 4 1 282 0 3 Dehalococcoides 61434 genus 3 0 1 281 1 Dehalococcoides mccartyi 61435 species 0 207 237581 no rank 1 71 0 71 0 1522671 species 1 Dehalococcoides sp. UCH007 class 3 189775 Thermomicrobia 5 1 268 0 191 0 85000 subclass 3 1 191 0 85001 order 4 3 Sphaerobacterales suborder 255728 2 187 0 187 1 0 2 family 85002 Sphaerobacteraceae 2 185 0 2056 genus 1 Sphaerobacter thermophilus 1 species 2057 0 185 74 0 189776 order 1 1 family 189777 0 74 499 genus 1 74 0 0 74 1 Thermomicrobium roseum 500 species 3 475962 class 0 218 0 218 3 order 475963 Caldilineaceae 3 family 2 475964 0 1 218 216 1 0 233191 1 genus 2 Caldilinea 215 0 species 133453 Caldilinea aerophila 1 0 384 4 1382928 class 1382929 4 order 4 Ardenticatenales 384 1 0 0 380 1 Ardenticatenaceae 3 5 family 1382930 1988031 2 genus 2 Candidatus Promineofilum 375 1 0 1 Candidatus Promineofilum breve 1806508 species 0 373 1 224856 0 phylum 40 1239 Firmicutes 666 0 3291 1 17 Tissierellia 1737404 8 class 333 0 1737407 no rank 2 genus 3 1582879 Ezakiella 2 1 333 0 0 330 1 Ezakiella massiliensis 1852374 species 2950 1 0 1737405 12 order 14 Tissierellales 1570339 family 20 10 Peptoniphilaceae 1 2160 0 0 443 1 2 Finegoldia 150022 2 genus 0 441 1 Finegoldia magna 1260 species 3 Anaerococcus 165779 1 genus 0 567 1 Anaerococcus mediterraneensis 1 species 1870984 0 278 0 288 Anaerococcus prevotii 1 species 33034 181 0 1161127 genus 1 1 Murdochiella vaginalis 1852373 species 0 181 Parvimonas 2 1 genus 543311 0 659 1 658 0 33033 species 1 Parvimonas micra 1 162289 genus 0 290 1 no rank 2637196 0 290 1 Peptoniphilus sp. ING2-D1G 1912856 species 0 290 0 778 1 Gottschalkiaceae 3 2 family 2042895 0 1 776 Gottschalkia 2 genus 2 1505664 0 774 Gottschalkia acidurici 1 species 1556 0 536 1 no rank 84086 243899 species 1 endosymbiont 'TC1' of Trimyema compressum 536 0 7 class 909932 Negativicutes 25 3795 1 0 0 1 193 Acidaminococcales 3 order 1 1843488 2 909930 family 0 192 192 0 904 genus 2 species 187327 Acidaminococcus intestini 1 74 0 species 905 Acidaminococcus fermentans 1 118 0 Veillonellales 8 3 order 1843489 0 963 1 0 1 960 Veillonellaceae 7 family 4 31977 genus 906 1 180 0 180 0 species 907 Megasphaera elsdenii 1 1 909928 genus 0 54 54 0 1702287 species 1 Negativicoccus massiliensis 0 1 473 Veillonella 3 genus 2 29465 species 248315 Veillonella rodentium 1 119 0 0 352 Veillonella parvula 1 species 29466 0 249 1 39948 genus species 39950 Dialister pneumosintes 1 249 0 0 2632 1 Selenomonadales 13 16 order 909929 4 Sporomusaceae 1843490 family 1 0 1 1648 1647 1 0 10 genus 365348 Pelosinus 3 1 2629460 no rank 0 1102 0 1102 Pelosinus sp. UFO1 1 species 484770 0 535 1 Pelosinus fermentans 365349 species 8 Selenomonadaceae 1843491 family 2 0 1 968 0 539 1 Selenomonas 6 19 genus 970 no rank 2637378 3 314 0 1 Selenomonas sp. oral taxon 920 1884263 species 0 70 712538 species 1 Selenomonas sp. oral taxon 478 122 0 713030 species 1 Selenomonas sp. oral taxon 136 122 0 0 95 1 Selenomonas sputigena 69823 species Selenomonas ruminantium 1 species 971 0 111 427 0 genus 158846 1 0 427 1 Megamonas hypermegale 158847 species 1 927 0 526524 class 1 9 Erysipelotrichia 526525 order 3 8 Erysipelotrichales 1 926 0 0 923 1 7 Erysipelotrichaceae 128827 7 family 0 164 1 no rank 544447 Erysipelotrichaceae bacterium I46 1 species 1834207 0 164 1 genus 1729679 0 57 0 57 Faecalibaculum rodentium 1 species 1702221 0 256 1 genus 191303 2638206 no rank 1 256 0 0 256 Turicibacter sp. H121 1 species 1712675 439 1 0 1647 6 genus 3 Erysipelothrix species 1648 Erysipelothrix rhusiopathiae 1 215 0 218 0 1514105 species 1 Erysipelothrix larvae Bacilli 418 93 class 91061 0 136723 1 1 39995 0 order 123 186826 Lactobacillales 163 1 3234 0 family 8 186828 Carnobacteriaceae 11 2747 4 genus 5 Carnobacterium 2147 1 0 1 Carnobacterium maltaromaticum 2751 species 0 1232 367 0 147709 species 1 Carnobacterium inhibens 2 no rank 257487 0 544 308 0 species 208596 Carnobacterium sp. 17-4 1 1 Carnobacterium sp. CP1 1564681 species 0 236 191769 1 genus 2 Marinilactibacillus 630 1 0 no rank 2632303 1 629 0 629 0 1911586 species 1 Marinilactibacillus sp. 15R 449 1 0 5 genus 1470540 Jeotgalibaca 3 species 708126 Jeotgalibaca dankookensis 1 209 0 0 235 1 no rank 2621505 1903686 species 1 Jeotgalibaca sp. PTS2502 235 0 1 12945 0 family 21 1300 Streptococcaceae 49 0 2941 1 5 Lactococcus 1357 2 genus 1 Lactococcus piscium 1364 species 0 347 381 0 species 1363 Lactococcus garvieae 1 0 134 1 Lactococcus raffinolactis 1366 species 0 2077 1 Lactococcus lactis 1358 species 43 Streptococcus 1301 89 genus 0 9983 1 0 108 Streptococcus sanguinis 1 species 1305 113 0 1814128 species 1 Streptococcus halotolerans 2 species group 119603 0 458 0 281 Streptococcus equi 1 species 1336 0 177 1 Streptococcus dysgalactiae 1334 species species 1307 Streptococcus suis 1 660 0 59310 species 1 Streptococcus macedonicus 173 0 400065 species 1 Streptococcus merionis 136 0 284 0 species 1348 Streptococcus parauberis 1 species 82348 Streptococcus pluranimalium 1 109 0 1 Streptococcus lutetiensis 150055 species 0 153 203 0 species 1346 Streptococcus iniae 1 species 1309 Streptococcus mutans 1 371 0 0 154 Streptococcus pantholopis 1 species 1811193 306 0 1308 species 1 Streptococcus thermophilus 671232 species group 3 828 0 species 1338 Streptococcus intermedius 1 308 0 species 1328 Streptococcus anginosus 1 351 0 Streptococcus constellatus 1 species 76860 0 169 0 257 1 Streptococcus infantarius 102684 species Streptococcus parasanguinis 1 species 1318 0 157 1314 species 1 Streptococcus pyogenes 527 0 608 0 1313 species 1 Streptococcus pneumoniae 257758 species 1 Streptococcus pseudopneumoniae 112 0 Streptococcus salivarius 1 species 1304 0 443 species 1335 Streptococcus equinus 1 130 0 7 no rank 2608887 0 899 Streptococcus sp. I-P16 1 species 1156433 0 75 1 Streptococcus sp. A12 1759399 species 0 132 Streptococcus sp. FDAARGOS_192 1 species 1839799 0 153 0 71 1 Streptococcus sp. NPS 308 1902136 species 88 0 species 1156431 Streptococcus sp. I-G2 1 0 271 1 Streptococcus sp. 'group B' 1319 species 109 0 712633 species 1 Streptococcus sp. oral taxon 431 62 0 1888195 species 1 Streptococcus himalayensis 124 0 species 45634 Streptococcus cristatus 1 0 433 Streptococcus gordonii 1 species 1302 236 0 species 1349 Streptococcus uberis 1 1825069 species 1 Streptococcus marmotae 117 0 species 1311 Streptococcus agalactiae 1 538 0 279 0 species 28037 Streptococcus mitis 1 0 259 Streptococcus oralis 1 species 1303 Streptococcus gallolyticus 1 species 315405 0 354 129 0 1326 species 1 Streptococcus acidominimus 174 0 197614 species 1 Streptococcus pasteurianus 81852 family 10 19 Enterococcaceae 1 4811 0 Vagococcus 3 1 genus 2737 0 604 1 305 0 519472 species 1 Vagococcus teuberi 633807 species 1 Vagococcus penaei 298 0 genus 2 51668 Tetragenococcus 2 1 406 0 1 Tetragenococcus halophilus 51669 species 0 404 3311 1 0 1350 10 genus 12 Enterococcus species 37734 Enterococcus casseliflavus 1 147 0 Enterococcus durans 1 species 53345 0 285 0 350 Enterococcus thailandicus 1 species 417368 0 373 Enterococcus hirae 1 species 1354 3 2608891 no rank 0 473 Enterococcus sp. FDAARGOS_163 1 species 2060306 0 153 Enterococcus sp. FDAARGOS_375 1 species 2060307 0 163 species 2057791 Enterococcus sp. CR-Ec1 1 157 0 302 0 species 53346 Enterococcus mundtii 1 0 506 Enterococcus faecalis 1 species 1351 248 0 2005703 species 1 Enterococcus wangshanyuanii 617 0 1352 species 1 Enterococcus faecium 0 480 1 genus 33969 0 480 Melissococcus plutonius 1 species 33970 301 0 no rank 263855 1 0 301 Lactobacillales bacterium 1 species 1993866 7 186827 family 0 994 0 994 1 Aerococcus 7 13 genus 1375 102 0 species 128944 Aerococcus urinaehominis 1 0 99 1 Aerococcus sanguinicola 119206 species 174 0 1377 species 1 Aerococcus viridans 1 Aerococcus christensenii 87541 species 0 158 species 1376 Aerococcus urinae 1 206 0 0 242 1 Aerococcus urinaeequi 51665 species 2917 1 0 2 family 81850 Leuconostocaceae 17 46255 6 genus 6 Weissella 835 1 0 species 759620 Weissella ceti 1 157 0 131 0 species 1249 Weissella paramesenteroides 1 165096 species 1 Weissella koreensis 217 0 137591 species 1 Weissella cibaria 119 0 0 205 1 Weissella jogaejeotgali 1631871 species 46254 genus 1 201 0 201 0 1247 species 1 Oenococcus oeni 9 Leuconostoc 1243 13 genus 0 1879 1 1 Leuconostoc kimchii 136609 species 0 179 species 33964 Leuconostoc citreum 1 179 0 1246 species 1 Leuconostoc lactis 77 0 Leuconostoc mesenteroides 1 species 1245 0 442 0 265 1 Leuconostoc carnosum 1252 species 0 470 1 Leuconostoc gelidum 1244 species 2685106 no rank 1 167 0 0 167 Leuconostoc sp. C2 1 species 979982 species 255248 Leuconostoc garlicum 1 87 0 0 1 14670 Lactobacillaceae 58 family 24 33958 0 1293 3 2767842 genus 1 Lactobacillus plantarum 1590 species 0 1013 1589 species 1 Lactobacillus pentosus 131 0 60520 species 1 Lactobacillus paraplantarum 149 0 2767877 genus 1 201 0 0 201 Lactobacillus kunkeei 1 species 148814 0 363 3 genus 2767893 0 128 Lactobacillus curieae 1 species 1138822 0 104 1 Lactobacillus buchneri 1581 species 152331 species 1 Lactobacillus parabuchneri 131 0 888 0 genus 2742598 3 97478 species 1 Lactobacillus mucosae 169 0 1613 species 1 Lactobacillus fermentum 163 0 Lactobacillus reuteri 1 species 1598 0 556 333 0 genus 2767886 3 species 267363 Lactobacillus zymae 1 34 0 637971 species 1 Lactobacillus koreensis 85 0 0 214 1 Lactobacillus brevis 1580 species 0 548 2 genus 2767881 Lactobacillus lindneri 1 species 53444 0 314 0 234 1 Lactobacillus sanfranciscensis 1625 species genus 2767879 6 1524 0 0 223 Lactobacillus farciminis 1 species 1612 1 Lactobacillus crustorum 392416 species 0 288 0 310 1 Lactobacillus ginsenosidimutans 1007676 species Lactobacillus heilongjiangensis 1 species 1074467 0 203 species 1602 Lactobacillus alimentarius 1 241 0 0 259 1 Lactobacillus allii 1847728 species 1 genus 2767876 0 100 1 Lactobacillus amylophilus 1603 species 0 100 0 1364 4 genus 2767887 105 0 1623 species 1 Lactobacillus ruminis species 1601 Lactobacillus agilis 1 133 0 158 0 species 89059 Lactobacillus acidipiscis 1 968 0 species 1624 Lactobacillus salivarius 1 1 1117 0 1253 genus 10 6 Pediococcus 208 0 species 187452 Pediococcus claussenii 1 0 182 1 Pediococcus inopinatus 114090 species species 1255 Pediococcus pentosaceus 1 363 0 1 Pediococcus damnosus 51663 species 0 210 144 0 species group 1670797 1 Pediococcus acidilactici 1 species 1254 0 144 0 214 1 2767890 genus Lactobacillus hokkaidonensis 1 species 1193095 0 214 2 2767885 genus 0 513 species 1599 Lactobacillus sakei 1 333 0 species 28038 Lactobacillus curvatus 1 180 0 455 0 genus 2767889 2 0 268 Lactobacillus backii 1 species 375175 species 1610 Lactobacillus coryniformis 1 187 0 genus 2767892 1 236 0 1 Lactobacillus paracollinoides 240427 species 0 236 genus 2759736 3 823 0 0 287 1 Lactobacillus casei 1582 species 0 295 Lactobacillus rhamnosus 1 species 47715 241 0 1597 species 1 Lactobacillus paracasei 0 1 4674 Lactobacillus 16 genus 112 1578 species 1587 Lactobacillus helveticus 1 482 0 2620435 no rank 4 916 0 311 0 species 1545702 Lactobacillus sp. wkB8 1 128 0 2099789 species 1 Lactobacillus sp. CBA3606 0 127 Lactobacillus sp. D1501 1 species 2108362 1 Lactobacillus sp. CBA3605 2099788 species 0 350 1 Lactobacillus jensenii 109790 species 0 249 33959 species 1 Lactobacillus johnsonii 586 0 157 0 83683 species 1 Lactobacillus amylolyticus 1 Lactobacillus acidophilus 1579 species 0 240 0 200 1 Lactobacillus acetotolerans 1600 species 0 180 1 Lactobacillus kefiranofaciens 267818 species 536 0 1596 species 1 Lactobacillus gasseri 543 0 1584 species 1 Lactobacillus delbrueckii 1 Lactobacillus amylovorus 1604 species 0 268 species 52242 Lactobacillus gallinarum 1 205 0 229 order 1385 Bacillales 254 96635 1 0 130 0 186821 family 1 0 130 1 no rank 663587 [Bacillus] selenitireducens 1 species 85683 0 130 97 0 186824 family 1 0 97 1 genus 1677050 species 1471761 Novibacillus thermophilus 1 97 0 8 539002 no rank 0 1005 0 361 1 539738 no rank 361 0 genus 1378 1 no rank 2624949 1 361 0 1785995 species 1 Gemella sp. oral taxon 928 361 0 0 644 7 no rank 539742 33986 genus 7 7 Exiguobacterium 1 644 0 4 no rank 2644629 0 461 0 150 1 Exiguobacterium sp. U13-1 1849031 species species 360911 Exiguobacterium sp. AT1b 1 89 0 species 1399115 Exiguobacterium sp. MH3 1 68 0 Exiguobacterium sp. ZWU0009 1 species 1224749 0 154 Exiguobacterium sibiricum 1 species 332410 0 95 0 81 1 Exiguobacterium antarcticum 132920 species 27 Planococcaceae 186818 family 15 0 1 6225 Rummeliibacillus 2 genus 2 648802 0 1 323 321 0 241244 species 1 Rummeliibacillus stabekisii Jeotgalibacillus 2 genus 1 157226 0 1 282 species 1508404 Jeotgalibacillus malaysiensis 1 281 0 2 Kurthia 1649 2 genus 0 410 1 2644826 no rank 1 408 0 408 0 species 1750719 Kurthia sp. 11kri321 1 648800 genus 7 3 Solibacillus 1 810 0 1 2637870 no rank 0 397 397 0 species 2048654 Solibacillus sp. R5-41 1 0 406 Solibacillus silvestris 1 species 76853 1 1621 0 1569 genus 9 5 Sporosarcina 0 540 Sporosarcina psychrophila 1 species 1476 2 2647733 no rank 0 295 1 Sporosarcina sp. P37 1930546 species 0 147 species 1930764 Sporosarcina sp. P33 1 148 0 0 777 1 Sporosarcina ureae 1571 species Planococcus 12 32 genus 1372 0 2764 1 1 Planococcus sp. L10.15 1302659 species 0 337 0 307 Planococcus halocryophilus 1 species 1215089 species 1598147 Planococcus faecalis 1 360 0 1 Planococcus donghaensis 414778 species 0 299 295 0 species 1374 Planococcus kocurii 1 species 161360 Planococcus antarcticus 1 183 0 500 0 no rank 2662419 2 340 0 species 1526927 Planococcus sp. PAMC 21323 1 160 0 species 2058136 Planococcus sp. MB-3u-03 1 249 0 192421 species 1 Planococcus maritimus Planococcus plakortidis 1 species 1038856 0 74 0 128 1 Planococcus rifietoensis 200991 species 1 3004 0 186820 family 2 9 Listeriaceae 0 340 1 2 Brochothrix 2755 1 genus 339 0 species 2756 Brochothrix thermosphacta 1 1637 29 genus 6 Listeria 2662 1 0 0 558 1 Listeria ivanovii 1638 species 0 1099 Listeria monocytogenes 1 species 1639 1 Listeria welshimeri 1643 species 0 359 0 305 1 Listeria seeligeri 1640 species 0 312 1 Listeria innocua 1642 species 0 51179 1 115 Bacillaceae 186817 64 family 1906945 genus 1 271 0 271 0 1426 species 1 Parageobacillus thermoglucosidasius Lysinibacillus 5 14 genus 400634 0 2498 1 402 0 species 1145276 Lysinibacillus varians 1 1 no rank 2636778 0 451 451 0 species 2072025 Lysinibacillus sp. YS11 1 0 1237 1 Lysinibacillus sphaericus 1421 species 394 0 28031 species 1 Lysinibacillus fusiformis 0 124 1 genus 351195 0 124 Salimicrobium jeotgali 1 species 1230341 5 genus 2675234 0 1909 199441 species 1 Bacillus krulwichiae 565 0 300825 species 1 Bacillus lehensis 356 0 species 79880 Bacillus clausii 1 366 0 0 413 1 Bacillus pseudofirmus 79885 species Bacillus halodurans 1 species 86665 0 209 1052 0 2675229 genus 2 species 1478 Bacillus simplex 1 801 0 1 Bacillus muralis 264697 species 0 251 84406 genus 16 7 Virgibacillus 1 2742 0 391 0 2017483 species 1 Virgibacillus phasianinus 1 Virgibacillus necropolis 163877 species 0 478 0 536 Virgibacillus pantothenticus 1 species 1473 0 908 2 no rank 2620237 0 396 Virgibacillus sp. SK37 1 species 403957 0 512 Virgibacillus sp. 6R 1 species 1911587 1482 species 1 Virgibacillus halodenitrificans 413 0 179 0 genus 175304 1 0 179 Lentibacillus amyloliquefaciens 1 species 1472767 342 0 29331 genus 1 species 1449 Amphibacillus xylanus 1 342 0 281 1 0 1 genus 1055323 Aeribacillus 2 species 33936 Aeribacillus pallidus 1 280 0 1386 491 genus 58 Bacillus 34554 1 0 289 0 species 79883 Bacillus horikoshii 1 1792192 species group 1 235 0 0 235 1 Bacillus altitudinis 293387 species 2648 0 no rank 185979 19 57 0 1409 species 1 Bacillus sp. (in: Bacteria) 1856406 species 1 Bacillus sp. H15-1 98 0 0 55 1 Bacillus sp. LM 4-2 1628753 species 110 0 species 2009331 Bacillus sp. MD-5 1 species 1565991 Bacillus sp. X1(2014) 1 352 0 0 71 1 Bacillus sp. Pc3 1446792 species 99 0 1127744 species 1 Bacillus sp. JS 0 122 Bacillus sp. OxB-1 1 species 98228 0 277 Bacillus sp. WP8 1 species 756828 Bacillus sp. SDLI1 1 species 1774743 0 73 Bacillus sp. FJAT-14266 1 species 1837130 0 141 Bacillus sp. Lzh-5 1 species 2049935 0 39 0 96 1 Bacillus sp. 1s-1 2026248 species 57 0 species 1941347 Bacillus sp. 275 1 0 79 Bacillus sp. SJ-10 1 species 563169 0 60 1 Bacillus sp. YP1 1574141 species Bacillus sp. IHB B 7164 1 species 1827146 0 365 25 0 species 1570330 Bacillus sp. BH072 1 666686 species 1 Bacillus sp. 1NLA3E 472 0 521 0 species 1471 Bacillus methanolicus 1 0 535 Bacillus flexus 1 species 86664 0 307 Bacillus glycinifermentans 1 species 1664069 86661 species group 10 18239 0 1 Bacillus cereus 1396 species 0 5991 0 367 1 Bacillus cytotoxicus 580165 species Bacillus anthracis 1 species 1392 0 742 0 472 1 Bacillus bombysepticus 658666 species 1428 species 1 Bacillus thuringiensis 7552 0 375 0 species 155322 Bacillus toyonensis 1 species 1405 Bacillus mycoides 1 1702 0 1038 0 2750818 no rank 3 304 0 species 1892404 Bacillus sp. ABP14 1 species 1839798 Bacillus sp. FDAARGOS_235 1 405 0 0 329 1 Bacillus sp. HBCD-sjtu 2053832 species 1 Bacillus gibsonii 79881 species 0 62 1 Bacillus pumilus 1408 species 0 1064 9 653685 species group 0 3458 0 941 3 1938374 species subgroup 1 Bacillus velezensis 492670 species 0 477 393 0 species 1390 Bacillus amyloliquefaciens 1 0 71 1 Bacillus siamensis 659243 species Bacillus licheniformis 1 species 1402 0 231 41 0 72361 species 1 Bacillus vallismortis 1648923 species 1 Bacillus paralicheniformis 167 0 species 119858 Bacillus sonorensis 1 194 0 1494 0 1423 species 1 Bacillus subtilis 0 390 1 Bacillus atrophaeus 1452 species 486 0 1413 species 1 Bacillus cellulosilyticus 1404 species 1 Bacillus megaterium 2472 0 372 0 412384 species 1 Bacillus aryabhattai species 33932 Bacillus cohnii 1 706 0 species 561879 Bacillus safensis 1 510 0 1 Bacillus coagulans 1398 species 0 298 1479 species 1 Bacillus smithii 226 0 324767 species 1 Bacillus infantis 171 0 532 0 1547283 species 1 Bacillus weihaiensis 0 136 Bacillus beveridgei 1 species 632773 214 0 species 1178537 Bacillus xiamenensis 1 0 582 1 Bacillus endophyticus 135735 species 0 1 474 Halobacillus 3 genus 5 45667 214 0 1570 species 1 Halobacillus halophilus 0 255 Halobacillus mangrovi 1 species 402384 0 904 2 2675230 genus 599 0 species 859143 Bacillus kochii 1 305 0 665099 species 1 Bacillus oceanisediminis 58 genus 129337 Geobacillus 15 2272 1 0 938 0 2642459 no rank 6 1 Geobacillus sp. Y412MC52 550542 species 0 39 0 329 1 Geobacillus sp. WCH70 471223 species 257 0 species 581103 Geobacillus sp. Y4.1MC1 1 691437 species 1 Geobacillus sp. C56-T3 205 0 56 0 544556 species 1 Geobacillus sp. Y412MC61 species 1233873 Geobacillus sp. GHH01 1 52 0 689 0 1505648 species group 4 33941 species 1 Geobacillus thermoleovorans 376 0 33938 species 1 Geobacillus thermocatenulatus 106 0 0 123 1 Geobacillus kaustophilus 1462 species 84 0 169283 species 1 Geobacillus lituanicus 1 Geobacillus thermodenitrificans 33940 species 0 214 Geobacillus genomosp. 3 1 species 1921421 0 74 0 219 Geobacillus stearothermophilus 1 species 1422 species 129338 Geobacillus subterraneus 1 80 0 521 1 0 4 genus 1329200 Fictibacillus 3 Fictibacillus phosphorivorans 1 species 1221500 0 264 Fictibacillus arsenicus 1 species 255247 0 253 0 987 1 genus 182709 987 0 species 182710 Oceanobacillus iheyensis 1 genus 12 150247 Anoxybacillus 6 1 1800 0 473 0 species 33934 Anoxybacillus flavithermus 1 species 294699 Anoxybacillus amylolyticus 1 335 0 2 no rank 2639704 0 696 323 0 1490057 species 1 Anoxybacillus sp. B7M1 373 0 species 1490052 Anoxybacillus sp. B2M1 1 1 Anoxybacillus gonensis 198467 species 0 284 genus 459532 1 205 0 0 205 Terribacillus aidingensis 1 species 586416 0 1 16509 Paenibacillaceae 44 family 25 186822 55080 genus 4 4 Brevibacillus 1 1308 0 390 0 species 1393 Brevibacillus brevis 1 260 0 54913 species 1 Brevibacillus formosus 654 0 1465 species 1 Brevibacillus laterosporus 76632 genus 1 150 0 377615 species 1 Thermobacillus composti 150 0 36 Paenibacillus 44249 59 genus 0 14679 1 Paenibacillus swuensis 1 species 1178515 0 159 189425 species 1 Paenibacillus graminis 449 0 348 0 species 1763538 Paenibacillus crassostreae 1 0 149 1 Paenibacillus beijingensis 1126833 species 0 489 1 Paenibacillus durus 44251 species 2044880 species group 1 238 0 483937 species 1 Paenibacillus riograndensis 238 0 0 294 1 Paenibacillus peoriae 59893 species 191 0 528191 species 1 Paenibacillus xylanexedens 400 0 189426 species 1 Paenibacillus odorifer species 159743 Paenibacillus terrae 1 163 0 0 525 Paenibacillus bovis 1 species 1616788 1464 species 1 Paenibacillus larvae 368 0 0 163 1 Paenibacillus ihbetae 1870820 species 2483 0 species 1406 Paenibacillus polymyxa 1 542 0 species 61624 Paenibacillus mucilaginosus 1 0 103 Paenibacillus sabinae 1 species 365617 160799 species 1 Paenibacillus borealis 266 0 1 Paenibacillus kribbensis 172713 species 0 149 0 98 1 Paenibacillus naphthalenovorans 162209 species 13 no rank 185978 0 5657 673 0 1536769 species 1 Paenibacillus sp. FSL P4-0081 0 184 1 Paenibacillus sp. FSL R7-0331 1536773 species 0 180 1 Paenibacillus sp. JDR-2 324057 species 148 0 481743 species 1 Paenibacillus sp. Y412MC10 1870819 species 1 Paenibacillus sp. BIHB4019 392 0 0 187 1 Paenibacillus sp. lzh-N1 2069255 species 327 0 1536775 species 1 Paenibacillus sp. FSL H7-0737 1769 0 species 1566358 Paenibacillus sp. IHBB 10380 1 species 1536771 Paenibacillus sp. FSL R5-0912 1 241 0 1 Paenibacillus sp. 32O-W 1695218 species 0 149 1536770 species 1 Paenibacillus sp. FSL R5-0345 951 0 276 0 species 1536774 Paenibacillus sp. FSL H7-0357 1 1 Paenibacillus sp. FSL R7-0273 1536772 species 0 180 1 Paenibacillus yonginensis 1462996 species 0 171 species 414771 Paenibacillus donghaensis 1 1096 0 0 119 1 Paenibacillus stellifer 169760 species 85151 no rank 2 347 0 0 347 2 55079 genus 1 no rank 2642329 0 192 Aneurinibacillus sp. XH2 1 species 1450761 0 192 0 155 1 Aneurinibacillus soli 1500254 species 0 1 668 7 Alicyclobacillaceae 186823 family 14 1 genus 29330 0 168 168 0 species 405212 Alicyclobacillus acidocaldarius 1 193 1 0 1 genus 1129704 Kyrpidia 3 species 2055160 Kyrpidia sp. EA-1 1 101 0 91 0 species 33943 Kyrpidia tusciae 1 genus 432330 2 293 0 Tumebacillus avium 1 species 1903704 0 207 0 86 1 Tumebacillus algifaecis 1214604 species 17589 1 0 90964 23 family 41 Staphylococcaceae 16270 1 0 1279 128 genus 33 Staphylococcus 0 448 1 Staphylococcus cohnii 29382 species 493 0 29388 species 1 Staphylococcus capitis 1 Staphylococcus condimenti 70255 species 0 393 1 Staphylococcus felis 46127 species 0 342 0 550 Staphylococcus haemolyticus 1 species 1283 0 402 1 Staphylococcus carnosus 1281 species 362 0 29384 species 1 Staphylococcus kloosii 169 0 species 1294 Staphylococcus muscae 1 0 310 Staphylococcus lutrae 1 species 155085 0 512 1 Staphylococcus stepanovicii 643214 species 0 554 Staphylococcus argenteus 1 species 985002 347 0 1295 species 1 Staphylococcus schleiferi Staphylococcus agnetis 1 species 985762 0 292 0 446 1 91994 no rank Staphylococcus sp. AntiMn-1 1 species 1715860 0 446 428 0 species 28035 Staphylococcus lugdunensis 1 1 Staphylococcus succinus 61015 species 0 487 1 Staphylococcus pettenkoferi 170573 species 0 208 species 1288 Staphylococcus xylosus 1 836 0 Staphylococcus epidermidis 1 species 1282 0 946 species 1292 Staphylococcus warneri 1 448 0 412 0 214473 species 1 Staphylococcus nepalensis 1123 0 45972 species 1 Staphylococcus pasteuri Staphylococcus sciuri 1 species 1296 0 572 511 0 308354 species 1 Staphylococcus simiae 0 335 1 Staphylococcus simulans 1286 species 0 437 1 Staphylococcus saprophyticus 29385 species 0 338 1 Staphylococcus pseudintermedius 283734 species Staphylococcus equorum 1 species 246432 0 707 species 1290 Staphylococcus hominis 1 513 0 Staphylococcus piscifermentans 1 species 70258 0 265 0 290 1 Staphylococcus hyicus 1284 species 1666 0 1280 species 1 Staphylococcus aureus 0 847 1 Macrococcus 4 2 genus 69965 Macrococcus canis 1 species 1855823 0 248 Macrococcus caseolyticus 1 species 69966 0 263 1 no rank 2619255 0 334 1898474 species 1 Macrococcus sp. IME1552 334 0 346 1 0 1 genus 2005363 Auricoccucs 2 1849491 species 1 Auricoccus indicus 345 0 1 45669 genus 0 103 0 103 1 Salinicoccus halodurans 407035 species 1 no rank 33974 0 61 0 61 1 genus 1930845 1871025 species 1 Ndongobacter massiliensis 61 0 191 Clostridia 186801 class 81 0 1 79334 10 order 53433 Halanaerobiales 12 3306 1 0 2 family 53434 Halobacteroidaceae 5 1098 1 0 2 Acetohalobium 28186 5 genus 0 342 1 species 28187 Acetohalobium arabaticum 1 337 0 0 1 754 Halobacteroides 2 genus 1 42417 753 0 species 42422 Halobacteroides halobius 1 1 2198 0 family 7 972 Halanaerobiaceae 6 32636 genus 23 2 Halothermothrix 1 357 0 334 0 species 31909 Halothermothrix orenii 1 3 Halanaerobium 2330 12 genus 0 1834 1 2331 species 1 Halanaerobium praevalens 1042 0 0 780 Halanaerobium hydrogeniformans 1 species 656519 order 5 485256 Natranaerobiales 3 1 414 0 485255 family 2 409 0 1 genus 375928 Natranaerobius 2 409 1 0 408 0 species 375929 Natranaerobius thermophilus 1 186802 order 167 140 Clostridiales 1 66109 0 0 117 1 31984 family 1 2697 genus 0 117 0 117 Heliobacterium modesticaldum 1 species 35701 0 1 884 Ruminococcaceae 10 family 12 541000 0 116 1 2 Faecalibacterium 216851 1 genus Faecalibacterium prausnitzii 1 species 853 0 115 350 1 0 1263 1 genus 3 Ruminococcus 180 0 1160721 species 1 Ruminococcus bicirculans species 1264 Ruminococcus albus 1 169 0 0 122 1 946234 genus 122 0 292800 species 1 Flavonifractor plautii 101 0 552397 no rank 1 101 0 species 29343 [Clostridium] cellulosi 1 62 0 no rank 2305133 1 62 0 1572656 species 1 Ruminococcaceae bacterium CPB6 1 genus 253238 0 121 121 0 species 253239 Ethanoligenens harbinense 1 0 70 1 990719 family 990721 genus 1 70 0 70 0 species 1805714 Christensenella massiliensis 1 543349 family 1 144 0 1 genus 2733 0 144 1 Symbiobacterium thermophilum 2734 species 0 144 1 4462 0 family 14 186804 Peptostreptococcaceae 10 603 1 0 1 genus 186831 Acetoanaerobium 2 602 0 species 1511 Acetoanaerobium sticklandii 1 1020 0 1849828 genus 1 species 1505 Paeniclostridium sordellii 1 1020 0 2107 1 0 1870884 1 genus 2 Clostridioides 1496 species 1 Clostridioides difficile 2106 0 2 Filifactor 44259 genus 1 0 1 260 0 259 1 Filifactor alocis 143361 species 1 1481960 genus 0 137 Peptoclostridium acidaminophilum 1 species 1731 0 137 321 0 no rank 1411023 1 0 321 Peptostreptococcaceae bacterium oral taxon 929 1 species 2081703 2330 0 2304686 family 11 1 2304691 genus 0 162 162 0 1510 species 1 [Clostridium] stercorarium 1 2305130 no rank 0 78 1 Ruminiclostridium sp. KB18 1834198 species 0 78 117 0 1637257 genus 1 117 0 species 884684 Mageeibacillus indolicus 1 2 Ruminiclostridium 1508657 10 genus 0 327 1 1 [Clostridium] cellulolyticum 1521 species 0 317 2304692 genus 3 1067 0 Herbivorax saccincola 1 species 1677857 0 395 0 436 1 [Clostridium] clariflavum 288965 species 0 236 1 Ruminiclostridium thermocellum 1515 species 1 363 0 genus 1 236752 Fastidiosipila 2 Fastidiosipila sanguinis 1 species 236753 0 362 0 216 1 2304693 genus 1 [Clostridium] thermosuccinogenes 84032 species 0 216 0 1 6920 24 Lachnospiraceae 186803 family 7 0 315 2 186928 no rank 203 0 39491 species 1 [Eubacterium] rectale species 712991 Lachnospiraceae bacterium oral taxon 500 1 112 0 0 1 333 2 Anaerostipes 207244 genus 1 332 0 species 649756 Anaerostipes hadrus 1 0 408 1 3 Blautia 572511 1 genus 265 0 species 1322 Blautia hansenii 1 142 0 no rank 2648079 1 Blautia sp. YL58 1 species 1796616 0 142 1 28050 genus 0 409 species 39485 [Eubacterium] eligens 1 409 0 0 811 1 genus 2569097 0 811 [Eubacterium] hallii 1 species 39488 1999 1 0 1 genus 698776 Cellulosilyticum 2 29360 species 1 Cellulosilyticum lentocellum 1998 0 1 775 0 1506553 genus 6 4 Lachnoclostridium 1 2608895 no rank 0 174 174 0 1834196 species 1 Lachnoclostridium sp. YL32 species 66219 Lachnoclostridium phytofermentans 1 490 0 0 105 Lachnoclostridium phocaeense 1 species 1871021 892 1 0 1 genus 830 Butyrivibrio 3 0 455 Butyrivibrio proteoclasticus 1 species 43305 436 0 species 185008 Butyrivibrio hungatei 1 2039240 genus 1 225 0 1 Anaerotignum propionicum 28446 species 0 225 0 168 1 2719313 genus 208479 species 1 [Clostridium] bolteae 168 0 1 2719231 genus 0 200 1 [Clostridium] saccharolyticum 84030 species 0 200 genus 1663717 1 266 0 species 1679721 Herbinix luporum 1 266 0 112 0 genus 841 1 301301 species 1 Roseburia hominis 112 0 1 45111 0 31979 family 64 40 Clostridiaceae Alkaliphilus 3 genus 1 114627 0 1 944 species 208226 Alkaliphilus metalliredigens 1 625 0 0 318 Alkaliphilus oremlandii 1 species 461876 0 1 42170 30 Clostridium 1485 genus 207 1538 species 1 Clostridium ljungdahlii 813 0 1085 0 species 1216932 Clostridium bornimense 1 species 1542 Clostridium novyi 1 821 0 1038 0 29341 species 1 Clostridium argentinense 1 Clostridium tetani 1513 species 0 1174 961 0 238834 species 1 Clostridium estertheticum 2100 0 species 1501 Clostridium pasteurianum 1 0 1613 1 Clostridium baratii 1561 species species 1502 Clostridium perfringens 1 2074 0 0 1138 Clostridium taeniosporum 1 species 394958 924 0 species 1493 Clostridium cellulovorans 1 439 0 2614128 no rank 2 1 Clostridium sp. SY8519 1042156 species 0 84 1 Clostridium sp. BNL1100 755731 species 0 355 1008 0 1509 species 1 Clostridium sporogenes 1494 species 1 Clostridium cochlearium 891 0 1488 species 1 Clostridium acetobutylicum 925 0 0 1842 1 Clostridium saccharoperbutylacetonicum 36745 species 0 1234 Clostridium scatologenes 1 species 1548 0 9358 Clostridium botulinum 1 species 1491 2469 0 species 169679 Clostridium saccharobutylicum 1 771 0 species 84023 Clostridium autoethanogenum 1 0 592 Clostridium formicaceticum 1 species 1497 2372 0 1520 species 1 Clostridium beijerinckii Clostridium aceticum 1 species 84022 0 587 0 748 Clostridium tyrobutyricum 1 species 1519 0 1317 Clostridium carboxidivorans 1 species 217159 1 Clostridium butyricum 1492 species 0 1547 species 46867 Clostridium chauvoei 1 962 0 1160 0 1534 species 1 Clostridium kluyveri 390805 genus 1 419 0 419 0 species 1424294 Geosporobacter ferrireducens 1 1 0 1981033 genus 1 Mordavella 4 Candidatus Arthromitus 49082 18 genus 0 1513 1 0 1495 3 2638829 no rank 0 476 1 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 species 49118 species 1 Candidatus Arthromitus sp. SFB-mouse 472 0 0 547 Candidatus Arthromitus sp. SFB-rat-Yit 1 species 1041504 68298 family 3 4 Syntrophomonadaceae 1 253 0 genus 1 862 Syntrophomonas 2 1 168 0 863 species 1 Syntrophomonas wolfei 167 0 1 129001 genus 0 82 1 Syntrophothermus lipocalidus 86170 species 0 82 no rank 538999 7 787 0 genus 1392389 1 128 0 Intestinimonas butyriciproducens 1 species 1297617 0 128 1 family 543314 Clostridiales Family XIII. Incertae Sedis 3 339 1 0 0 182 [Eubacterium] sulci 1 species 143393 0 156 1 86331 genus 156 0 114527 species 1 Mogibacterium diversum 1 genus 2717089 0 162 Mordavella sp. Marseille-P3756 1 species 2086584 0 162 158 1 0 1 family 539000 Clostridiales Family XVII. Incertae Sedis 2 157 0 73918 genus 1 0 157 Thermaerobacter marianensis 1 species 73919 1 family 216572 0 130 0 130 1 genus 459786 0 130 Oscillibacter valericigenes 1 species 351091 689 0 186806 family 3 1730 genus 7 2 Eubacterium 1 438 0 0 431 Eubacterium limosum 1 species 1736 251 0 genus 33951 1 251 0 species 33952 Acetobacterium woodii 1 family 13 186807 Peptococcaceae 26 1 4045 0 1 2282740 genus 0 308 308 0 species 102134 Desulfotomaculum gibsoniae 1 2282742 genus 1 210 0 210 0 58138 species 1 Desulfotomaculum acetoxidans 157 0 278993 genus 1 157 0 863643 species 1 Thermincola potens 1 genus 1562 Desulfotomaculum 5 644 1 0 species 1564 Desulfotomaculum ruminis 1 134 0 0 122 Desulfotomaculum nigrificans 1 species 1565 species 59610 Desulfotomaculum reducens 1 260 0 Desulfotomaculum ferrireducens 1 species 1833852 0 127 79206 genus 3 908 0 1 Desulfosporosinus acidiphilus 885581 species 0 356 species 1563 Desulfosporosinus orientis 1 260 0 0 292 Desulfosporosinus meridiei 1 species 79209 51196 genus 1 2 Syntrophobotulus 1 168 0 51197 species 1 Syntrophobotulus glycolicus 167 0 0 400 1 4 Dehalobacter 56112 1 genus species 55583 Dehalobacter restrictus 1 137 0 0 262 2 2635733 no rank 133 0 1131462 species 1 Dehalobacter sp. CF 129 0 1147129 species 1 Dehalobacter sp. DCA 255 1 0 51514 1 genus 2 Dehalobacterium 0 254 1 Dehalobacterium formicoaceticum 51515 species 97 0 471826 genus 1 1 Candidatus Desulforudis audaxviator 471827 species 0 97 genus 2 36853 Desulfitobacterium 5 1 885 0 0 251 Desulfitobacterium dichloroeliminans 1 species 233055 217 0 49338 species 1 Desulfitobacterium hafniense 0 184 1 Desulfitobacterium dehalogenans 36854 species 0 231 1 Desulfitobacterium metallireducens 142877 species 1 9060 0 order 5 68295 Thermoanaerobacterales 33 2 543372 family 0 103 1 103 0 252965 genus 1 2 Mahella species 252966 Mahella australiensis 1 102 0 1 4248 0 186814 family 7 15 Thermoanaerobacteraceae 129957 genus 1 222 0 1 Carboxydothermus hydrogenoformans 129958 species 0 222 0 1 3491 9 Thermoanaerobacter 1754 genus 161 418 0 29323 species 1 Thermoanaerobacter brockii species 108150 Thermoanaerobacter italicus 1 394 0 407 0 583357 species 1 Thermoanaerobacter mathranii 0 418 1 Thermoanaerobacter pseudethanolicus 496866 species 0 385 Thermoanaerobacter kivui 1 species 2325 2636821 no rank 2 868 0 399726 species 1 Thermoanaerobacter sp. X514 419 0 449 0 573062 species 1 Thermoanaerobacter sp. X513 0 440 1 Thermoanaerobacter wiegelii 46354 species 102 0 genus 140458 1 102 0 species 85874 Thermacetogenium phaeum 1 147 0 42857 no rank 2 44260 genus 1 89 0 89 0 1525 species 1 Moorella thermoacetica 42837 genus 1 58 0 58 0 species 42838 Ammonifex degensii 1 1 genus 249529 0 279 279 0 911092 species 1 Caldanaerobacter subterraneus 543371 family 2 13 Thermoanaerobacterales Family III. Incertae Sedis 1 4256 0 genus 45 44000 Caldicellulosiruptor 9 1 3130 0 0 390 1 Caldicellulosiruptor obsidiansis 717609 species 381 0 413888 species 1 Caldicellulosiruptor hydrothermalis 344 0 species 52765 Caldicellulosiruptor kristjanssonii 1 432 0 31899 species 1 Caldicellulosiruptor bescii 313 0 52766 species 1 Caldicellulosiruptor lactoaceticus species 55205 Caldicellulosiruptor owensensis 1 333 0 species 413889 Caldicellulosiruptor kronotskyensis 1 494 0 0 398 Caldicellulosiruptor saccharolyticus 1 species 44001 genus 2 28895 Thermoanaerobacterium 3 1 1124 0 1 Thermoanaerobacterium thermosaccharolyticum 1517 species 0 782 Thermoanaerobacterium xylanolyticum 1 species 29329 0 340 0 448 1 2 Thermodesulfobiaceae 227387 1 family 1 genus 227388 0 447 447 0 species 184064 Thermodesulfobium narugense 1 364 0 2770089 order 2 1 2770092 family 0 282 282 0 499228 genus 1 0 282 1 Tepidanaerobacter acetatoxydans 499229 species 0 82 1 family 2770093 0 82 1 genus 291988 1 Thermosediminibacter oceani 291990 species 0 82 149 0 class 1676648 3 1 order 1676649 Limnochordales 3 149 1 0 148 0 family 1676650 2 2 Limnochorda 1676651 5 genus 0 148 1 0 143 Limnochorda pilosa 1 species 1555112 2380432 0 clade 1798711 153 2380432 1 0 1117 14 phylum 153 Cyanobacteria 378 0 class 307596 4 307595 order 5 4 Gloeobacterales 1 378 0 6 family 1890422 Gloeobacteraceae 3 373 1 0 0 367 2 genus 33071 1 Gloeobacter violaceus 33072 species 0 179 188 0 species 1416614 Gloeobacter kilaueensis 1 order 7 1890505 Chroococcidiopsidales 3 1 1069 0 1890528 family 13 2 Chroococcidiopsidaceae 1 1062 0 54298 genus 1 1049 0 Chroococcidiopsis thermalis 1 species 54299 0 1049 Nostocales 34 order 56 1161 0 1 20376 0 1 1581 Rivulariaceae 3 family 22 1185 0 1559 1 2 Rivularia 373984 3 genus 1556 0 no rank 2676603 1 0 1556 Rivularia sp. PCC 7116 1 species 373994 0 2201 1 Hapalosiphonaceae 3 9 family 1892263 2 genus 1190 Fischerella 2 2192 1 0 494603 no rank 1 2190 0 0 2190 Fischerella sp. NIES-3754 1 species 1752063 0 10150 1 Nostocaceae 18 30 family 1162 1 6918 0 genus 37 1177 Nostoc 10 0 1020 1 Nostoc flagelliforme 1306274 species 0 5299 7 2593658 no rank Nostoc sp. CENA543 1 species 1869241 0 768 623 0 species 103690 Nostoc sp. PCC 7120 1 Nostoc sp. PCC 7524 1 species 28072 0 1010 0 877 1 Nostoc sp. PCC 7107 317936 species 1261031 species 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 645 0 553 0 1618022 species 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 823 0 species 1751286 Nostoc sp. NIES-3756 1 0 562 1 Nostoc punctiforme 272131 species 1163 14 genus 4 Anabaena 1991 1 0 no rank 2619674 2 1309 0 1647413 species 1 Anabaena sp. WA102 648 0 0 661 1 Anabaena sp. 90 46234 species 0 668 Anabaena cylindrica 1 species 1165 1211 1 0 6 genus 264688 Trichormus 3 264691 species 1 Trichormus variabilis 628 0 0 577 1 Trichormus azollae 1164 species 2661849 family 8 5847 0 0 1 5847 Calothrix 8 genus 22 1186 6 2619626 no rank 0 4925 967 0 2005469 species 1 Calothrix sp. NIES-4071 1111 0 species 2005462 Calothrix sp. NIES-3974 1 species 1954171 Calothrix sp. NIES-2098 1 805 0 1 Calothrix sp. NIES-4101 2005461 species 0 875 Calothrix sp. PCC 7507 1 species 99598 0 562 1 Calothrix sp. 336/3 1337936 species 0 605 Calothrix parietina 1 species 32054 0 900 0 541 1 no rank 1219117 1940762 species 1 Nostocales cyanobacterium HT-58-2 541 0 0 2336346 1 Synechococcales 58 91 order 1890424 1 663 0 family 1 1890429 Acaryochloridaceae 3 0 662 1 Acaryochloris 2 6 genus 155977 1 Acaryochloris marina 155978 species 0 656 1 787 0 family 2 1890436 Pseudanabaenaceae 3 0 1 785 Pseudanabaena 2 genus 1 1152 784 0 no rank 2593292 1 species 82654 Pseudanabaena sp. PCC 7367 1 784 0 0 1 1049 Leptolyngbyaceae 6 family 5 1890438 47251 genus 2 5 Leptolyngbya 1 1044 0 0 812 3 no rank 2650499 0 416 Leptolyngbya sp. PCC 7376 1 species 111781 191 0 species 1752064 Leptolyngbya sp. NIES-3755 1 205 0 species 1080068 Leptolyngbya sp. O-77 1 Leptolyngbya boryana 1 species 1184 0 230 2309371 1 0 1213 9 family 5 Prochloraceae 1218 genus 89 4 Prochlorococcus 1 2309362 0 2627481 no rank 2 537039 0 0 3538 1 Prochlorococcus sp. MIT 0801 1501269 species 0 533501 Prochlorococcus sp. MIT 0604 1 species 1501268 1 Prochlorococcus marinus 1219 species 0 1772234 2 family 2303730 0 598 0 598 1 Halomicronema 2 4 genus 170610 594 0 species 1209493 Halomicronema hongdechloris 1 5 Merismopediaceae 1890428 1 family 0 907 1 Synechocystis 4 genus 11 1142 0 1 906 895 0 2640012 no rank 3 1148 species 1 Synechocystis sp. PCC 6803 174 0 174 0 2116702 species 1 Synechocystis sp. IPPAS B-1465 0 547 Synechocystis sp. PCC 6714 1 species 1147 family 27 1890426 Synechococcaceae 33 1 22880 0 159 0 146785 genus 1 146786 species 1 Thermosynechococcus elongatus 159 0 1048 1 0 30 genus 167375 Cyanobium 3 1 2627006 no rank 0 472 species 1851505 Cyanobium sp. NIES-981 1 472 0 Cyanobium gracile 1 species 59930 0 546 13034 genus 1 2 Dactylococcopsis 1 490 0 489 0 species 292566 Dactylococcopsis salina 1 1 21156 0 genus 257 1129 Synechococcus 26 no rank 2626047 23 20639 0 0 137 Synechococcus sp. JA-2-3B'a(2-13) 1 species 321332 Synechococcus sp. RCC307 1 species 316278 0 336 0 121 1 Synechococcus sp. PCC 8807 195248 species 5619 0 110662 species 1 Synechococcus sp. CC9605 1 Synechococcus sp. PCC 7502 1173263 species 0 434 0 146 Synechococcus sp. PCC 7117 1 species 195498 157 0 species 374982 Synechococcus sp. PCC 73109 1 0 124 1 Synechococcus sp. UTEX 2973 1350461 species 1280380 species 1 Synechococcus sp. KORDI-100 1222 0 133 0 species 1827144 Synechococcus sp. NIES-970 1 432 0 585423 species 1 Synechococcus sp. KORDI-49 1 Synechococcus sp. CC9311 64471 species 0 268 species 1916956 Synechococcus sp. SynAce01 1 363 0 32051 species 1 Synechococcus sp. WH 7803 278 0 1 Synechococcus sp. PCC 7003 374981 species 0 108 0 142 Synechococcus sp. PCC 7002 1 species 32049 0 1617 1 Synechococcus sp. WH 8102 84588 species 1 Synechococcus sp. JA-3-3Ab 321327 species 0 81 0 4902 1 Synechococcus sp. WH 8109 166314 species Synechococcus sp. CC9902 1 species 316279 0 256 0 139 1 Synechococcus sp. PCC 6312 195253 species species 585425 Synechococcus sp. KORDI-52 1 2032 0 1592 0 29410 species 1 Synechococcus sp. WH 8103 32046 species 1 Synechococcus elongatus 135 0 Synechococcus lividus 1 species 33070 0 125 0 19085 44 1301283 subclass 0 5810 1 Oscillatoriales 20 73 order 1150 Microcoleaceae 4 16 family 1892252 0 1711 1 44471 genus 2 2 Microcoleus 1 316 0 314 0 2642155 no rank 1 0 314 Microcoleus sp. PCC 7113 1 species 1173027 1 1205 genus 0 1379 0 1379 1 Trichodesmium erythraeum 1206 species 1892255 2 family 3 Gomontiellaceae 519 1 0 2 Crinalium 241421 genus 2 0 1 517 515 0 species 241425 Crinalium epipsammum 1 1 192 0 1892249 family 22 3 Cyanothecaceae Cyanothece 2 22 genus 43988 0 170 1 0 148 1 2649277 no rank 395961 species 1 Cyanothece sp. PCC 7425 148 0 146 1 0 1892251 7 family 3 Coleofasciculaceae 1 139 0 genus 1 63132 Geitlerinema 2 0 138 1 no rank 2648775 0 138 1 Geitlerinema sp. PCC 7407 1173025 species 3169 1 0 1892254 26 family 6 Oscillatoriaceae 2 Moorea 1155738 genus 7 0 1 1416 1155739 species 1 Moorea producens 1409 0 0 1 1727 3 Oscillatoria 1158 genus 10 940 0 118323 species 1 Oscillatoria acuminata 0 777 Oscillatoria nigro-viridis 1 species 482564 1 13275 0 order 36 1118 Chroococcales 24 2304 1 0 7 family 1890449 Microcystaceae 4 10 genus 1125 Microcystis 3 2297 1 0 1708 0 species 1126 Microcystis aeruginosa 1 579 0 no rank 2643300 1 0 579 Microcystis sp. MC19 1 species 1967666 10 Aphanothecaceae 1890450 family 5 0 1 4022 1453359 1 genus 2 Candidatus Atelocyanobacterium 719 1 0 713887 species 1 Candidatus Atelocyanobacterium thalassa 718 0 0 1559 2 28070 genus 1 2546356 species 0 720 65393 strain 1 Cyanothece sp. PCC 7424 720 0 0 839 1 2546359 species 839 0 497965 strain 1 Cyanothece sp. PCC 7822 92682 no rank 2 377 0 377 1 0 2 genus 76023 Halothece 2 no rank 2632878 1 375 0 species 65093 Halothece sp. PCC 7418 1 375 0 0 549 1 genus 263510 0 549 1 species 2546360 549 0 strain 43989 Cyanothece sp. ATCC 51142 1 genus 2546365 2 813 0 813 0 2546366 species 2 395962 strain 1 Cyanothece sp. PCC 8802 416 0 397 0 strain 41431 Cyanothece sp. PCC 8801 1 1890452 family 8 2 Cyanobacteriaceae 1 900 0 0 892 1 102234 genus 379064 species 1 Cyanobacterium aponinum 892 0 1890464 family 23 7 Chroococcaceae 1 6013 0 102231 genus 2 2 Gloeocapsa 1 529 0 527 0 2623012 no rank 1 527 0 species 1173026 Gloeocapsa sp. PCC 7428 1 3297 0 genus 268175 1 3297 0 no rank 2648896 1 0 3297 1 Chondrocystis sp. NIES-4102 2005460 species 669357 15 genus 3 Geminocystis 2164 1 0 2149 0 2625037 no rank 2 0 891 Geminocystis sp. NIES-3709 1 species 1617448 1258 0 species 1615909 Geminocystis sp. NIES-3708 1 2727 1 0 52604 8 order 8 Pleurocapsales 1890498 family 13 4 Dermocarpellaceae 1 2307 0 0 1 2294 3 Stanieria 102115 genus 7 2642663 no rank 1 1327 0 0 1327 Stanieria sp. NIES-3757 1 species 1807358 960 0 species 102116 Stanieria cyanosphaera 1 Hyellaceae 3 7 family 1890500 0 412 1 0 1 405 2 Pleurocapsa 44474 genus 4 401 0 species 54308 Pleurocapsa minor 1 437 0 no rank 1983111 1 species 718217 cyanobacterium endosymbiont of Epithemia turgida 1 437 0 0 141904 1 Actinobacteria 610 5 phylum 201174 5 84995 class 0 319 Rubrobacterales 5 11 order 84996 0 319 1 84997 family 1 4 Rubrobacteraceae 1 308 0 3 Rubrobacter 42255 3 genus 0 307 1 species 49319 Rubrobacter xylanophilus 1 164 0 0 140 1 Rubrobacter radiotolerans 42256 species 84992 class 6 612 0 11 order 84993 Acidimicrobiales 6 612 1 0 1 155 0 family 3 84994 Acidimicrobiaceae 3 2 Acidimicrobium 53634 4 genus 0 152 1 148 0 53635 species 1 Acidimicrobium ferrooxidans 446 0 2448023 family 2 0 446 1 Ilumatobacter 2 5 genus 682522 Ilumatobacter coccineus 1 species 467094 0 441 0 2276 4 1497346 class 7 order 588673 Solirubrobacterales 4 2276 1 0 Conexibacteraceae 3 3 family 320583 0 2269 1 2266 1 0 1 genus 191494 Conexibacter 2 1 Conexibacter woesei 191495 species 0 2265 1752188 no rank 4 605 0 96 0 species 1848755 Actinobacteria bacterium IMCC26077 1 Actinobacteria bacterium IMCC26103 1 species 1848756 0 196 0 91 1 Actinobacteria bacterium IMCC25003 1848255 species species 1848754 Actinobacteria bacterium IMCC19121 1 222 0 1760 427 class 561 Actinobacteria 136066 1 0 85008 12 order 20 Micromonosporales 4437 1 0 family 61 28056 Micromonosporaceae 19 1 4425 0 5 genus 673534 Plantactinospora 4 1096 1 0 2631981 no rank 3 1091 0 Plantactinospora sp. KBS50 1 species 2024580 0 289 0 363 1 Plantactinospora sp. BC1 2108470 species species 2071627 Plantactinospora sp. BB1 1 439 0 1 417 0 genus 3 168694 Salinispora 3 237 0 168695 species 1 Salinispora tropica 168697 species 1 Salinispora arenicola 177 0 1 964 0 genus 4 1873 Micromonospora 4 1 2617518 no rank 0 342 species 648999 Micromonospora sp. L5 1 342 0 0 339 1 Micromonospora aurantiaca 47850 species Verrucosispora maris 1 species 1003110 0 279 2 0 84593 genus 1 Verrucosispora 1865 15 genus 6 Actinoplanes 1885 1 0 367 0 196914 species 1 Actinoplanes friuliensis 1093 0 no rank 2626549 3 0 343 1 Actinoplanes sp. N902-109 649831 species species 2033844 Actinoplanes sp. SE50 1 375 0 0 375 Actinoplanes sp. SE50/110 1 species 134676 410 0 1866 species 1 Actinoplanes missouriensis 29373 1 0 147 order 85007 Corynebacteriales 157 52 Corynebacteriaceae 1653 19 family 0 6751 1 Corynebacterium 51 84 genus 1716 0 6732 1 Corynebacterium testudinoris 1 species 136857 0 104 1 Corynebacterium atypicum 191610 species 0 58 0 131 2 no rank 2624378 37 0 1487956 species 1 Corynebacterium sp. ATCC 6931 Corynebacterium sp. NML98-0116 1 species 702967 0 94 species 1231000 Corynebacterium lactis 1 71 0 151 0 203263 species 1 Corynebacterium aquilae Corynebacterium humireducens 1 species 1223514 0 179 1 Corynebacterium terpenotabidum 89154 species 0 153 Corynebacterium simulans 1 species 146827 0 94 1 Corynebacterium jeikeium 38289 species 0 109 195 0 1230998 species 1 Corynebacterium frankenforstense 1 Corynebacterium urealyticum 43771 species 0 92 Corynebacterium sphenisci 1 species 191493 0 140 47 0 species 258224 Corynebacterium resistens 1 0 90 Corynebacterium efficiens 1 species 152794 0 93 1 Corynebacterium phocae 161895 species 0 313 Corynebacterium glutamicum 1 species 1718 Corynebacterium ammoniagenes 1 species 1697 0 69 1 Corynebacterium cystitidis 35757 species 0 125 1 Corynebacterium kroppenstedtii 161879 species 0 54 127 0 108486 species 1 Corynebacterium falsenii 0 159 Corynebacterium striatum 1 species 43770 Corynebacterium stationis 1 species 1705 0 89 47 0 161896 species 1 Corynebacterium camporealensis 56 0 161899 species 1 Corynebacterium singulare 0 86 1 Corynebacterium imitans 156978 species 84 0 160386 species 1 Corynebacterium casei 110 0 1404244 species 1 Corynebacterium glyciniphilum 0 91 1 Corynebacterium pseudotuberculosis 1719 species 0 77 1 Corynebacterium mustelae 571915 species 0 117 1 Corynebacterium crudilactis 1652495 species 118 0 species 1717 Corynebacterium diphtheriae 1 225326 species 1 Corynebacterium halotolerans 138 0 167 0 575200 species 1 Corynebacterium maris Corynebacterium deserti 1 species 1408191 0 119 81 0 species 169292 Corynebacterium aurimucosum 1 species 1727 Corynebacterium variabile 1 210 0 Corynebacterium vitaeruminis 1 species 38305 0 162 1 Corynebacterium doosanense 1121358 species 0 83 35755 species 1 Corynebacterium kutscheri 114 0 28028 species 1 Corynebacterium flavescens 63 0 [Brevibacterium] flavum 1 species 92706 0 110 0 166 1 Corynebacterium marinum 349751 species Corynebacterium ulcerans 1 species 65058 0 92 104 0 species 1721 Corynebacterium callunae 1 0 70 Corynebacterium ureicelerivorans 1 species 401472 Corynebacterium epidermidicanis 1 species 1050174 0 54 42817 species 1 Corynebacterium argentoratense 146 0 1256 0 1072256 species 1 Corynebacterium uterequi 1 Corynebacterium glaucum 187491 species 0 84 56 Mycobacteriaceae 1762 23 family 0 12510 1 1930 0 genus 670516 5 176 0 species 83262 Mycobacterium immunogenum 1 1325 0 species 36809 Mycobacterium abscessus 1 115 0 species 1520670 Mycobacterium stephanolepidis 1 0 144 Mycobacterium saopaulense 1 species 1578165 1774 species 1 Mycobacterium chelonae 170 0 0 2956 13 genus 1866885 279 0 1791 species 1 Mycobacterium aurum species 1772 Mycobacterium smegmatis 1 243 0 200 0 species 758802 Mycobacterium litorale 1 1 Mycobacterium thermoresistibile 1797 species 0 149 348 0 1804 species 1 Mycobacterium gilvum 36814 species 1 Mycobacterium rhodesiae 181 0 0 264 1 Mycobacterium vaccae 1810 species Mycobacterium vanbaalenii 1 species 110539 0 278 247 0 1771 species 1 Mycobacterium phlei 0 206 1 Mycobacterium goodii 134601 species species 1800 Mycobacterium chubuense 1 215 0 0 162 Mycobacterium neoaurum 1 species 1795 0 184 1 Mycobacterium fortuitum 1766 species 1 genus 697025 0 122 1 Hoyosella subflava 639313 species 0 122 0 542 2 1073531 genus 275 0 species 1788 Mycobacterium terrae 1 1 Mycobacterium sinense 875328 species 0 267 Mycobacterium 34 256 genus 1763 0 6937 1 Mycobacterium dioxanotrophicus 1 species 482462 0 313 0 193 1 Mycobacterium ulcerans 1809 species 261524 species 1 Mycobacterium liflandii 252 0 0 522 Mycobacterium marinum 1 species 1781 0 1737 8 species group 120793 1 Mycobacterium colombiense 339268 species 0 164 40 0 1138383 species 1 Mycobacterium paraintracellulare 701042 species 1 Mycobacterium marseillense 128 0 Mycobacterium avium 1 species 1764 0 894 Mycobacterium intracellulare 4 123 species 1767 0 511 1 92 0 1203599 subspecies 1 Mycobacterium yongonense 55 0 35617 subspecies 1 Mycobacterium indicus pranii 241 0 222805 subspecies 1 Mycobacterium chimaera 46 0 1769 species 1 Mycobacterium leprae 0 705 4 species group 77643 0 121 1 Mycobacterium canettii 78331 species 1773 species 209 3 Mycobacterium tuberculosis 1 584 0 biotype 33894 Mycobacterium africanum 1 183 0 0 192 1 Mycobacterium bovis 1765 biotype 0 205 Mycobacterium kansasii 1 species 1768 0 160 1 species group 2249310 0 160 1 Mycobacterium shigaense 722731 species 0 122 Mycobacterium haemophilum 1 species 29311 2642494 no rank 13 2426 0 Mycobacterium sp. QIA-37 1 species 1561223 0 109 162 0 species 164757 Mycobacterium sp. JLS 1 0 187 1 Mycobacterium sp. EPa45 1545728 species 0 193 Mycobacterium sp. YC-RL4 1 species 1682113 0 394 1 Mycobacterium sp. JS623 212767 species 249 0 species 1879023 Mycobacterium sp. djl-10 1 species 1920667 Mycobacterium sp. WY10 1 176 0 2051552 species 1 Mycobacterium sp. PYR15 159 0 Mycobacterium sp. MOTT36Y 1 species 1168287 0 83 165 0 species 1273687 Mycobacterium sp. VKM Ac-1817D 1 191 0 164756 species 1 Mycobacterium sp. MCS 0 162 1 Mycobacterium sp. NRRL B-3805 1570328 species 0 196 1 Mycobacterium sp. KMS 189918 species 509 0 family 85028 3 Tsukamurella 3 genus 8 2060 0 1 509 0 175 1 Tsukamurella paurometabola 2061 species 0 326 1 Tsukamurella tyrosinosolvens 57704 species no rank 697024 1 76 0 1 1847725 genus 0 76 1528099 species 1 Lawsonella clevelandensis 76 0 0 1 7536 Nocardiaceae 31 family 16 85025 7 Nocardia 1817 genus 16 0 1 2326 1 Nocardia terpenica 455432 species 0 355 0 362 1 Nocardia farcinica 37329 species 635 0 37326 species 1 Nocardia brasiliensis Nocardia cyriacigeorgica 1 species 135487 0 439 species 37332 Nocardia seriolae 1 277 0 242 0 37330 species 1 Nocardia nova 5194 1 0 1827 99 genus 23 Rhodococcus 336 0 species 1830 Rhodococcus ruber 1 0 183 Rhodococcus rhodochrous 1 species 1829 0 375 Rhodococcus jostii 1 species 132919 1 Rhodococcus pyridinivorans 103816 species 0 251 0 227 1 Rhodococcus hoagii 43767 species 258 0 species 191292 Rhodococcus aetherivorans 1 Rhodococcus fascians 1 species 1828 0 201 345 0 species 1833 Rhodococcus erythropolis 1 192944 no rank 12 1886 0 0 108 1 Rhodococcus sp. PBTS 2 1653479 species 0 93 1 Rhodococcus sp. BH4 1807790 species Rhodococcus sp. YL-1 1 species 1045808 0 115 81 0 679318 species 1 Rhodococcus sp. WMMA185 1727214 species 1 Rhodococcus sp. H-CA8f 135 0 species 1570939 Rhodococcus sp. 2G 1 156 0 0 243 Rhodococcus sp. MTM3W5.2 1 species 1805827 285 0 1033922 species 1 Rhodococcus sp. WB1 0 117 Rhodococcus sp. 008 1 species 1723645 1564114 species 1 Rhodococcus sp. B7740 167 0 0 200 Rhodococcus sp. PBTS 1 1 species 1653478 935199 species 1 Rhodococcus sp. p52 186 0 0 219 Rhodococcus qingshengii 1 species 334542 37919 species 1 Rhodococcus opacus 814 0 3 family 85026 Gordoniaceae 9 1347 1 0 genus 8 2053 Gordonia 8 1 1344 0 175 0 1004901 species 1 Gordonia iterans 0 212 1 Gordonia bronchialis 2054 species 1136941 species 1 Gordonia phthalatica 212 0 201 0 2055 species 1 Gordonia terrae 0 165 1 Gordonia polyisoprenivorans 84595 species 371 0 2657482 no rank 2 161 0 species 2059875 Gordonia sp. YC-JH1 1 0 210 1 Gordonia sp. KTR9 337191 species 2 316606 family 0 177 1 177 0 genus 1 286801 Segniliparus 2 1 Segniliparus rotundus 286802 species 0 176 0 320 2 family 85029 37914 genus 2 320 0 0 100 Dietzia timorensis 1 species 499555 0 220 1 no rank 2617939 Dietzia sp. oral taxon 368 1 species 712270 0 220 2039638 19 order 12 Candidatus Nanopelagicales 2350 1 0 11 family 2162846 0 2331 Candidatus Nanopelagicus 4 genus 6 2039639 0 1 1130 1 Candidatus Nanopelagicus hibericus 1884915 species 0 323 357 0 1884634 species 1 Candidatus Nanopelagicus limnes 1 Candidatus Nanopelagicus abundans 1884916 species 0 444 Candidatus Planktophila 7 10 genus 622681 0 1201 1 species 1884913 Candidatus Planktophila lacus 1 228 0 1 Candidatus Planktophila sulfonica 1884904 species 0 110 Candidatus Planktophila versatilis 1 species 1884905 0 183 0 254 Candidatus Planktophila dulcis 1 species 1884914 573600 species 1 Candidatus Planktophila limnetica 223 0 193 0 species 1884907 Candidatus Planktophila vernalis 1 3 order 622450 0 144 3 Actinopolysporaceae 622451 1 family 0 144 1 0 143 1 Actinopolyspora 2 2 genus 1849 Actinopolyspora erythraea 1 species 414996 0 141 290 0 85014 order 2 85034 8 family 2 Glycomycetaceae 290 1 0 1 genus 283810 0 282 0 282 1 Stackebrandtia nassauensis 283811 species Propionibacteriales 32 18 order 85009 0 3856 1 family 34 31957 Propionibacteriaceae 18 1 1925 0 genus 6 72763 Tessaracoccus 5 1 710 0 190 0 2635419 no rank 1 1909732 species 1 Tessaracoccus sp. T2.5-30 190 0 species 399497 Tessaracoccus flavescens 1 174 0 1610493 species 1 Tessaracoccus flavus 138 0 species 1332264 Tessaracoccus aquimaris 1 202 0 1912215 genus 1 213 0 Acidipropionibacterium acidipropionici 1 species 1748 0 213 29404 1 genus 2 Microlunatus 178 1 0 177 0 29405 species 1 Microlunatus phosphovorus Propionibacterium 3 genus 2 1743 0 1 309 1 Propionibacterium freudenreichii 1744 species 0 261 1 2608905 no rank 0 46 1 Propionibacterium sp. oral taxon 193 671223 species 0 46 57 0 203133 genus 1 no rank 2633994 1 57 0 57 0 species 1871034 Propionimicrobium sp. Marseille-P3275 1 1 genus 2801844 0 109 0 109 1 Pseudopropionibacterium propionicum 1750 species genus 3 1912216 Cutibacterium 4 1 315 0 135 0 species 33010 Cutibacterium avidum 1 94 0 species 1747 Cutibacterium acnes 1 Cutibacterium granulosum 1 species 33011 0 83 Nocardioidaceae 13 14 family 85015 0 1913 1 1839 20 genus 4 Nocardioides 848 1 0 2045452 species 1 Nocardioides sp. 78 198 0 450734 species 1 Nocardioides dokdonensis 361 0 1 2615069 no rank 0 269 Nocardioides sp. JS614 1 species 196162 0 269 0 324 1 2 Kribbella 182639 14 genus 0 310 1 Kribbella flavida 182640 species 1 195 0 2040 genus 1 2 Aeromicrobium 0 194 Aeromicrobium erythreum 1 species 2041 0 1 364 Pimelobacter 2 genus 2 2044 362 0 2045 species 1 Pimelobacter simplex Micropruina 2 5 genus 116071 0 168 1 163 0 75385 species 1 Micropruina glycogenica 0 218 1 no rank 52018 1650658 species 1 Actinobacteria bacterium IMCC26256 218 0 113 0 1643683 order 2 0 113 2 85032 family 0 113 1 2 Acidothermus 28048 8 genus 105 0 28049 species 1 Acidothermus cellulolyticus order 1643684 3 248 0 1 248 0 85031 family 1 3 Nakamurellaceae 2 Nakamurella 53460 3 genus 0 247 1 0 244 Nakamurella multipartita 1 species 53461 18 Actinomycetales 2037 order 3 0 1 1542 2049 16 family 17 Actinomycetaceae 1539 1 0 2 Mobiluncus 2050 genus 2 0 1 119 1 Mobiluncus curtisii 2051 species 0 117 0 65 1 genus 2529408 Actinomyces meyeri 1 species 52773 0 65 genus 1653174 1 64 0 1 Actinotignum schaalii 59505 species 0 64 0 96 1 genus 1069494 species 1661 Trueperella pyogenes 1 96 0 1105 1 0 34 genus 1654 Actinomyces 9 Actinomyces sp. VUL4_3 1 species 1912795 0 54 0 219 1 Actinomyces radicidentis 111015 species 1 Actinomyces gaoshouyii 1960083 species 0 137 497 0 no rank 2609248 3 1 Actinomyces sp. oral taxon 414 712122 species 0 192 Actinomyces sp. oral taxon 897 1 species 2081702 0 141 species 1851395 Actinomyces sp. Chiba101 1 164 0 0 111 Actinomyces oris 1 species 544580 species 1852377 Actinomyces pacaensis 1 53 0 28263 1 genus 2 Arcanobacterium 74 1 0 Arcanobacterium haemolyticum 1 species 28264 0 73 0 200 2 1643818 no rank 200 1 0 1 genus 147067 Thermobispora 2 species 2006 Thermobispora bispora 1 199 0 order 22 85012 Streptosporangiales 15 1 2610 0 family 6 2004 Streptosporangiaceae 5 1 1228 0 0 1 526 2 Streptosporangium 2000 genus 1 2001 species 1 Streptosporangium roseum 525 0 0 696 1 Nonomuraea 2 5 genus 83681 1 2593643 no rank 0 691 691 0 1909395 species 1 Nonomuraea sp. ATCC 55076 2 2012 family 0 246 1 246 0 2019 genus 6 2 Thermomonospora 240 0 species 2020 Thermomonospora curvata 1 Nocardiopsaceae 7 family 6 83676 0 1 1114 4 Nocardiopsis 2013 genus 6 0 1 1009 455 0 species 2014 Nocardiopsis dassonvillei 1 0 306 1 Nocardiopsis gilva 280236 species 242 0 species 53437 Nocardiopsis alba 1 99 1 0 3 genus 83677 Thermobifida 2 0 96 1 Thermobifida fusca 2021 species Pseudonocardiales 39 18 order 85010 0 10155 1 60 family 2070 Pseudonocardiaceae 38 10137 1 0 0 177 1 genus 1851 Saccharomonospora viridis 1 species 1852 0 177 0 354 1 2029 genus 0 354 1 Kibdelosporangium phytohabitans 860235 species 1 genus 165301 Lentzea 2 363 1 0 0 362 1 Lentzea guizhouensis 1586287 species 2 Kutzneria 43356 genus 7 0 1 371 43357 species 1 Kutzneria albida 364 0 6 Actinoalloteichus 65496 25 genus 0 1577 1 Actinoalloteichus sp. ADI127-7 1 species 1612552 0 401 2 2644606 no rank 0 616 0 280 Actinoalloteichus sp. AHMU CJ021 1 species 2072503 0 336 Actinoalloteichus sp. GBA129-24 1 species 1612551 0 202 1 Actinoalloteichus hymeniacidonis 340345 species species 1470176 Actinoalloteichus hoggarensis 1 333 0 0 349 1 Alloactinosynnema 2 3 genus 674734 0 346 1 2636053 no rank 0 346 1 Alloactinosynnema sp. L-07 1653480 species 2527 1 0 1847 39 genus 8 Pseudonocardia Pseudonocardia dioxanivorans 1 species 240495 0 409 0 2079 6 2619320 no rank species 1641402 Pseudonocardia sp. HH130629-09 1 301 0 0 406 1 Pseudonocardia sp. HH130630-07 1690815 species species 445576 Pseudonocardia sp. AL041005-10 1 364 0 0 312 Pseudonocardia sp. EC080625-04 1 species 1096868 0 337 1 Pseudonocardia sp. EC080619-01 1096856 species 0 359 Pseudonocardia sp. EC080610-09 1 species 1688404 240 1 0 142577 1 genus 2 Prauserella 530584 species 1 Prauserella marina 239 0 2466 1 0 20 genus 1813 Amycolatopsis 7 645 0 31958 species 1 Amycolatopsis orientalis 470 0 species 33910 Amycolatopsis mediterranei 1 1 Amycolatopsis methanolica 1814 species 0 317 0 367 1 Amycolatopsis japonica 208439 species 647 0 2618356 no rank 2 0 317 1 Amycolatopsis sp. BJA-103 1911175 species 330 0 species 1896961 Amycolatopsis sp. AA4 1 355 0 1835 genus 1 1836 species 1 Saccharopolyspora erythraea 355 0 420 1 0 2071 2 genus 2 Saccharothrix 418 0 species 103731 Saccharothrix espanaensis 1 0 1 878 3 Actinosynnema 40566 genus 12 0 386 Actinosynnema pretiosum 1 species 42197 0 480 1 Actinosynnema mirum 40567 species 0 2751 1 24 Bifidobacteriales 85004 5 order 23 Bifidobacteriaceae 31953 27 family 0 2746 1 0 66 1 196082 genus 0 66 1 Parascardovia denticolens 78258 species 0 1 2271 19 Bifidobacterium 1678 genus 18 Bifidobacterium choerinum 1 species 35760 0 197 142 0 species 158787 Bifidobacterium scardovii 1 92 0 1680 species 1 Bifidobacterium adolescentis Bifidobacterium asteroides 1 species 1684 0 74 193 0 1685 species 1 Bifidobacterium breve 0 120 1 Bifidobacterium animalis 28025 species 104 0 1689 species 1 Bifidobacterium dentium 36 0 species 1687 Bifidobacterium coryneforme 1 species 76 1686 Bifidobacterium catenulatum 2 1 160 0 630129 subspecies 1 Bifidobacterium kashiwanohense 84 0 28026 species 1 Bifidobacterium pseudocatenulatum 92 0 0 283 Bifidobacterium longum 1 species 216816 45 0 species 1691 Bifidobacterium indicum 1 123 0 species 1681 Bifidobacterium bifidum 1 0 79 1 Bifidobacterium angulatum 1683 species 33905 species 1 Bifidobacterium thermophilum 59 0 1 Bifidobacterium pseudolongum 1694 species 0 188 0 266 1 Bifidobacterium actinocoloniiforme 638619 species 300 0 2701 genus 1 Gardnerella vaginalis 1 species 2702 0 300 genus 196081 1 82 0 78259 species 1 Scardovia inopinata 82 0 order 622452 2 391 0 0 391 2 83778 family 0 391 1 2 Kineococcus 33981 1 genus Kineococcus radiotolerans 1 species 131568 0 390 7 order 1643682 0 927 85030 family 12 7 Geodermatophilaceae 1 927 0 1 258 0 1860 genus 1 2 Geodermatophilus species 1861 Geodermatophilus obscurus 1 257 0 2 genus 38501 Blastococcus 2 317 1 0 138336 species 1 Blastococcus saxobsidens 315 0 2 Modestobacter 88138 1 genus 0 340 1 Modestobacter marinus 1 species 477641 0 339 85011 91 order 82 Streptomycetales 50427 1 0 50336 1 0 2062 133 family 81 Streptomycetaceae 75 Streptomyces 1883 620 genus 0 46548 1 164348 species 1 Streptomyces puniciscabiei 377 0 54571 species 1 Streptomyces venezuelae 1002 0 Streptomyces collinus 1 species 42684 0 413 1200 0 species 1912 Streptomyces hygroscopicus 1 0 1024 1 Streptomyces pactum 68249 species species 1888 Streptomyces albus 1 1177 0 364 0 species 1355015 Streptomyces pluripotens 1 0 727 2 species group 629295 0 404 1 species subgroup 1482558 species 1908 Streptomyces globisporus 1 404 0 species subgroup 1482596 1 323 0 1 Streptomyces griseus 1911 species 0 323 species 1940 Streptomyces albireticuli 1 415 0 12076 0 no rank 2593676 24 1 Streptomyces sp. CFMR 7 1649184 species 0 426 0 414 Streptomyces sp. MOE7 1 species 1961713 1265601 species 1 Streptomyces sp. PAMC 26508 321 0 1262452 species 1 Streptomyces sp. 769 532 0 Streptomyces sp. RTd22 1 species 1841249 0 479 557 0 1725411 species 1 Streptomyces sp. CdTB01 341 0 234612 species 1 Streptomyces sp. TN58 species 444103 Streptomyces sp. CNQ-509 1 408 0 0 350 1 Streptomyces sp. S8 1837283 species species 1984801 Streptomyces sp. CLI2509 1 445 0 381 0 species 2094021 Streptomyces sp. WAC00288 1 377 0 1751294 species 1 Streptomyces sp. 4F 0 528 Streptomyces sp. CMB-StM0423 1 species 2059884 0 703 Streptomyces sp. SAT1 1 species 1849967 0 684 1 Streptomyces sp. 3211 1964449 species 471 0 465541 species 1 Streptomyces sp. Mg1 862751 species 1 Streptomyces sp. SirexAA-E 273 0 2135430 species 1 Streptomyces sp. P3 1025 0 499 0 species 1812480 Streptomyces sp. fd1-xmd 1 1 Streptomyces sp. Sge12 1972846 species 0 503 1 Streptomyces sp. FR-008 206662 species 0 741 1 Streptomyces sp. CCM_MD2014 1561022 species 0 370 413 0 species 1661694 Streptomyces sp. Tue 6075 1 835 0 1495638 species 1 Streptomyces sp. M56 Streptomyces avermitilis 1 species 33903 0 680 0 401 Streptomyces griseochromogenes 1 species 68214 0 374 Streptomyces clavuligerus 1 species 1901 612 0 1930 species 1 Streptomyces scabiei 476 0 species 1926 Streptomyces reticuli 1 0 386 Streptomyces pristinaespiralis 1 species 38300 0 636 1 Streptomyces lavendulae 1914 species Streptomyces xiamenensis 1 species 408015 0 278 species 68570 Streptomyces albulus 1 4615 0 Streptomyces pratensis 1 species 1169025 0 312 species 1437453 Streptomyces leeuwenhoekii 1 382 0 499 0 species 193462 Streptomyces niveus 1 0 779 Streptomyces formicae 1 species 1616117 1038928 species 1 Streptomyces xinghaiensis 423 0 591 0 species 553510 Streptomyces gilvosporeus 1 317 0 species 68192 Streptomyces cyaneogriseus 1 Streptomyces noursei 1 species 1971 0 486 538 0 species 68280 Streptomyces violaceusniger 1 67267 species 1 Streptomyces alboflavus 480 0 1 Streptomyces autolyticus 75293 species 0 1795 0 421 Streptomyces lividans 1 species 1916 0 514 Streptomyces ambofaciens 1 species 1889 0 3193 2 species group 1477431 1902 species 1 Streptomyces coelicolor 2757 0 1 Streptomyces sampsonii 42239 species 0 436 Streptomyces sp. XZHG99 1 species 2049881 0 372 Streptomyces parvulus 1 species 146923 0 329 755 0 379067 species 1 Streptomyces bingchenggensis 1255 0 species 47763 Streptomyces lydicus 1 Streptomyces violaceoruber 1 species 1935 0 360 440 0 species 285473 Streptomyces rubrolavendulae 1 1 Streptomyces peucetius 1950 species 0 334 0 554 1 Streptomyces alfalfae 1642299 species 337 0 29303 species 1 Streptomyces cattleya 506 0 species 92644 Streptomyces malaysiensis 1 362257 species 1 Streptomyces vietnamensis 546 0 579 0 1915 species 1 Streptomyces lincolnensis 0 356 Streptomyces chartreusis 1 species 1969 1783515 species 1 Streptomyces sp. S10(2016) 359 0 species 68202 Streptomyces fulvissimus 1 400 0 Streptomyces glaucescens 1 species 1907 0 483 Kitasatospora 5 genus 15 2063 0 1 3655 1 Kitasatospora setae 2066 species 0 905 2633591 no rank 1 533 0 2018025 species 1 Kitasatospora sp. MMS16-BH015 533 0 Kitasatospora albolonga 1 species 68173 0 1795 1894 species 1 Kitasatospora aureofaciens 407 0 1 2739 0 85013 order 21 7 Frankiales 0 2718 1 6 Frankiaceae 74712 14 family 1854 14 genus 5 Frankia 2704 1 0 no rank 2632575 1 475 0 Frankia sp. EAN1pec 1 species 298653 0 475 0 1245 Frankia alni 1 species 1859 570 0 species 106370 Frankia casuarinae 1 298654 species 1 Frankia inefficax 400 0 85006 order 116 128 Micrococcales 1 20495 0 1 272 0 145360 family 7 3 Sanguibacteraceae 0 1 265 Sanguibacter 2 genus 4 60919 261 0 60920 species 1 Sanguibacter keddieii 85021 family 8 1009 0 244 1 0 2 genus 267408 Arsenicicoccus 2 0 242 1 2663846 no rank 242 0 species 1658671 Arsenicicoccus sp. oral taxon 190 1 0 1 261 Serinicoccus 2 genus 5 265976 Serinicoccus sp. JLT9 1 species 1758689 0 256 genus 16 53457 Janibacter 2 1 280 0 0 264 1 Janibacter indicus 857417 species 1 224 0 53357 genus 4 2 Intrasporangium species 53358 Intrasporangium calvum 1 220 0 125316 family 2 260 0 1 260 0 84756 genus 8 2 Beutenbergia 84757 species 1 Beutenbergia cavernae 252 0 0 1577 1 Promicromonosporaceae 8 5 family 85017 1 595 0 genus 1 254250 Isoptericola 3 species 372663 Isoptericola dokdonensis 1 339 0 0 255 1 Isoptericola variabilis 139208 species 0 1 309 2 Xylanimonas 186188 genus 1 0 308 1 Xylanimonas cellulosilytica 186189 species 157920 genus 2 668 0 328 0 1710 species 1 Cellulosimicrobium cellulans 0 340 1 no rank 2624466 340 0 1980001 species 1 Cellulosimicrobium sp. TH-20 0 1 551 Dermacoccaceae 6 family 7 145357 2 genus 745364 Luteipulveratus 2 198 1 0 Luteipulveratus mongoliensis 1 species 571913 0 196 228 0 genus 57495 1 0 228 Dermacoccus nishinomiyaensis 1 species 1274 Kytococcus 2 genus 4 57499 0 1 118 Kytococcus sedentarius 1 species 1276 0 114 1 1974 0 family 6 85020 Dermabacteraceae 11 1 141 0 472568 genus 6 2 Devriesea 1 Devriesea agamarum 472569 species 0 135 genus 4 36739 Dermabacter 2 1 72 0 Dermabacter vaginalis 1 species 1630135 0 68 1755 1 0 11 genus 43668 Brachybacterium 6 1 no rank 2623841 0 294 0 294 1 Brachybacterium sp. P6-10-X1 1903186 species 1331682 species 1 Brachybacterium ginsengisoli 187 0 43669 species 1 Brachybacterium faecium 214 0 Brachybacterium sp. VM2412 1 species 2017484 0 863 0 186 Brachybacterium sp. VR2415 1 species 2017485 7587 1 0 56 family 85023 Microbacteriaceae 42 224 0 no rank 1655488 2 224 0 1655489 clade 2 genus 529883 2 224 0 0 143 1 Candidatus Rhodoluna planktonica 535712 species species 529884 Rhodoluna lacicola 1 81 0 Microterricola 2 1 genus 518733 0 190 1 Microterricola viridarii 1 species 412690 0 189 83 0 1705353 genus 1 species 708131 Aurantimicrobium minutum 1 83 0 3 Cryobacterium 69578 genus 4 0 1 364 670052 species 1 Cryobacterium arcticum 175 0 no rank 2649013 1 185 0 0 185 1 Cryobacterium sp. LW097 1978566 species 352 0 genus 33886 2 species 145458 Rathayibacter toxicus 1 178 0 0 174 Rathayibacter tritici 1 species 33888 genus 25 1573 Clavibacter 6 1 1053 0 1 1028 0 28447 species 212 5 Clavibacter michiganensis subspecies 31964 Clavibacter sepedonicus 1 255 0 Clavibacter capsici 1 subspecies 1874630 0 214 33014 subspecies 1 Clavibacter insidiosus 171 0 1 Clavibacter nebraskensis 31963 subspecies 0 176 0 79 1 1434032 genus 0 79 1 Pontimonas salivibrio 1159327 species 337004 genus 1 143 0 species 279828 Microcella alkaliphila 1 143 0 0 1 184 2 Cnuibacter 1759331 genus 1 1 Cnuibacter physcomitrellae 1619308 species 0 183 1090 0 genus 447237 1 0 1090 1 no rank 2626248 0 1090 1 Frondihabitans sp. PAMC 28766 1795630 species 665 1 0 2034 5 genus 4 Curtobacterium 0 226 Curtobacterium pusillum 1 species 69373 434 0 no rank 257496 2 species 1561023 Curtobacterium sp. MR_MD2014 1 240 0 0 194 1 Curtobacterium sp. BH-2-1-1 1905847 species genus 23 33882 Microbacterium 14 1 2424 0 132 0 species 84292 Microbacterium chocolatum 1 0 215 1 Microbacterium hominis 162426 species 8 no rank 2609290 0 1495 Microbacterium sp. XT11 1 species 367477 0 171 190 0 species 1938334 Microbacterium sp. TPU 3598 1 species 1795053 Microbacterium sp. PAMC 28756 1 161 0 Microbacterium sp. 1.5R 1 species 1916917 0 149 281 0 species 1714373 Microbacterium sp. No. 7 1 1696072 species 1 Microbacterium sp. CGR1 144 0 Microbacterium sp. str. 'China' 1 species 2103230 0 149 0 250 Microbacterium sp. BH-3-3-3 1 species 1906742 0 157 Microbacterium paludicola 1 species 300019 Microbacterium aurum 1 species 36805 0 183 Microbacterium testaceum 1 species 2033 0 219 314 0 genus 33877 1 453304 species 1 Agromyces aureus 314 0 0 366 1 110932 genus 1575 species 1 Leifsonia xyli 366 0 1268 family 25 34 Micrococcaceae 1 5571 0 75 0 genus 1645 1 Renibacterium salmoninarum 1 species 1646 0 75 32207 genus 2 150 0 1 Rothia mucilaginosa 43675 species 0 102 48 0 2047 species 1 Rothia dentocariosa 0 160 1 1269 genus 160 0 1270 species 1 Micrococcus luteus 209 0 genus 596707 1 1 Sinomonas atrocyanea 37927 species 0 209 4 Pseudarthrobacter 1742993 4 genus 0 498 1 Pseudarthrobacter sulfonivorans 1 species 121292 0 130 Pseudarthrobacter chlorophenolicus 1 species 85085 0 125 Pseudarthrobacter phenanthrenivorans 1 species 361575 0 239 1 1742992 genus 0 156 156 0 43663 species 1 Paenarthrobacter aurescens 0 99 1 2078575 genus 99 0 1618207 species 1 Arthrobacter sp. IHBB 11108 1 454 0 genus 3 57493 Kocuria 4 188 0 446860 species 1 Kocuria flava 143 0 71999 species 1 Kocuria palustris Kocuria rhizophila 1 species 72000 0 120 0 124 1 1868332 genus 124 0 556325 species 1 Neomicrococcus aestuarii 1742989 genus 7 2 Glutamicibacter 1 194 0 187 0 256701 species 1 Glutamicibacter arilaitensis Arthrobacter 15 genus 27 1663 0 1 3427 0 156 1 Arthrobacter crystallopoietes 37928 species 310 0 656366 species 1 Arthrobacter alpinus 0 2934 12 no rank 235627 species 1690248 Arthrobacter sp. LS16 1 126 0 Arthrobacter sp. PGP41 1 species 2079227 0 1405 152 0 1849032 species 1 Arthrobacter sp. U41 125 0 species 1652545 Arthrobacter sp. YC-RL1 1 106 0 species 1771959 Arthrobacter sp. ATCC 21022 1 109 0 2020486 species 1 Arthrobacter sp. YN 174 0 1357915 species 1 Arthrobacter sp. QXT-31 1806905 species 1 Arthrobacter sp. ZXY-2 87 0 Arthrobacter sp. ERGS1:01 1 species 1704044 0 234 1118963 species 1 Arthrobacter sp. Rue61a 106 0 147 0 species 290399 Arthrobacter sp. FB24 1 0 163 Arthrobacter sp. PAMC 25486 1 species 1494608 0 85 1 no rank 577468 1 genus 2038 0 85 2039 species 1 Tropheryma whipplei 85 0 family 85022 1 50 0 1 43673 genus 0 50 0 50 Jonesia denitrificans 1 species 43674 family 2 85016 Cellulomonadaceae 6 1 990 0 1707 8 genus 5 Cellulomonas 988 1 0 Cellulomonas fimi 1 species 1708 0 276 species 1711 Cellulomonas flavigena 1 291 0 no rank 2620175 1 250 0 Cellulomonas sp. PSBB021 1 species 2003551 0 250 1 Cellulomonas gilvus 11 species 0 163 Dermatophilaceae 2 1 family 85018 0 148 1 1 1862 genus 0 147 0 147 1 Dermatophilus congolensis 1863 species 305 1 0 3 family 85019 Brevibacteriaceae 3 2 genus 1696 Brevibacterium 2 302 1 0 species 1703 Brevibacterium linens 1 300 0 1 2373 0 order 8 414714 Catenulisporales 4 414877 21 family 3 Catenulisporaceae 2365 1 0 1 2344 0 414878 genus 3 2 Catenulispora 0 2341 Catenulispora acidiphila 1 species 304895 1 2021 0 class 5 84998 Coriobacteriia 29 order 12 84999 Coriobacteriales 13 1 796 0 family 5 84107 Coriobacteriaceae 6 1 253 0 102106 genus 3 2 Collinsella 1 74 0 71 0 species 74426 Collinsella aerofaciens 1 genus 3 33870 Coriobacterium 2 1 74 0 0 71 Coriobacterium glomerans 1 species 33871 1 84113 no rank 0 100 100 0 species 1531429 Coriobacteriaceae bacterium 68-1-3 1 531 0 1643824 family 6 2767353 genus 1 93 0 0 93 1 Atopobium parvulum 1382 species Atopobium 1 genus 1380 0 1 4 Olsenella 133925 genus 7 0 1 437 105 0 133926 species 1 Olsenella uli no rank 2638792 1 183 0 1 Olsenella sp. oral taxon 807 712411 species 0 183 0 142 Olsenella sp. Marseille-P2300 1 species 1805478 0 1220 1 Eggerthellales 15 8 order 1643822 1 1212 0 1643826 family 22 14 Eggerthellaceae 0 75 1 2 Slackia 84108 2 genus 0 73 1 Slackia heliotrinireducens 84110 species 171 0 1981050 genus 1 1 Phoenicibacter massiliensis 1944646 species 0 171 69 0 84162 genus 1 69 0 species 84163 Cryptobacterium curtum 1 genus 1 447020 Adlercreutzia 2 1 123 0 446660 species 1 Adlercreutzia equolifaciens 122 0 102 0 genus 79603 1 102 0 species 79604 Denitrobacterium detoxificans 1 644652 10 genus 3 Gordonibacter 373 1 0 1 Gordonibacter urolithinfaciens 1335613 species 0 196 0 167 Gordonibacter massiliensis 1 species 1841863 84111 2 genus 3 Eggerthella 277 1 0 0 211 1 Eggerthella lenta 84112 species 1 no rank 2648737 0 64 64 0 species 502558 Eggerthella sp. YY7918 1 544448 2 phylum 102 Tenericutes 28430 1 0 97 Mollicutes 31969 59 class 0 27051 1 56 order 2085 Mycoplasmatales 44 12929 1 0 1 12873 0 2092 family 29 43 Mycoplasmataceae Mycoplasma 27 105 genus 2093 0 8858 1 species 136241 Mycoplasma haemocanis 1 312 0 2097 species 1 Mycoplasma genitalium 151 0 366 0 species 2123 Mycoplasma putrefaciens 1 447 0 2098 species 1 Mycoplasma hominis 87 0 species 65123 Mycoplasma wenyonii 1 28227 species 1 Mycoplasma penetrans 429 0 81 0 171632 species 1 Mycoplasma ovis 228 0 2683645 no rank 1 0 228 1 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 species 0 166 Mycoplasma flocculare 1 species 2128 Mycoplasma hyopneumoniae 1 species 2099 0 716 151 0 species 2111 Mycoplasma arthritidis 1 279 0 species 50052 Mycoplasma crocodyli 1 species 2118 Mycoplasma mobile 1 414 0 0 867 Mycoplasma haemofelis 1 species 29501 0 305 1 Mycoplasma hyorhinis 2100 species 206 0 984991 species 1 Mycoplasma parvum 0 190 Mycoplasma dispar 1 species 86660 Mycoplasma yeatsii 1 species 51365 0 329 1 Mycoplasma pneumoniae 2104 species 0 66 319 0 species 29554 Mycoplasma canadense 1 290 0 species 45362 Mycoplasma bovoculi 1 1976 0 species group 656088 3 535 0 species 2095 Mycoplasma capricolum 1 1 Mycoplasma mycoides 2102 species 0 961 species 2105 Mycoplasma leachii 1 480 0 species 57372 Mycoplasma suis 1 122 0 256 0 species 2096 Mycoplasma gallisepticum 1 Ureaplasma 3 3 genus 2129 0 610 1 Ureaplasma parvum 1 species 134821 0 311 296 0 2130 species 1 Ureaplasma urealyticum 12 genus 2767358 0 3376 286 0 species 171284 Mycoplasma cynos 1 312 0 2110 species 1 Mycoplasma agalactiae species 28903 Mycoplasma bovis 1 625 0 0 194 Mycoplasma synoviae 1 species 2109 Mycoplasma fermentans 1 species 2115 0 259 0 235 Mycoplasma bovigenitalium 1 species 2112 2113 species 1 Mycoplasma californicum 148 0 species 29555 Mycoplasma canis 1 349 0 0 285 Mycoplasma arginini 1 species 2094 0 265 Mycoplasma pulmonis 1 species 2107 0 204 Mycoplasma bovirhinis 1 species 29553 Mycoplasma pullorum 1 species 48003 0 214 order 15 186328 Entomoplasmatales 39 1 11504 0 24 Spiroplasmataceae 2131 family 24 0 1 7897 0 7873 1 23 Spiroplasma 2132 91 genus 0 419 Spiroplasma diminutum 1 species 216936 213 0 species 1114980 Spiroplasma atrichopogonis 1 216935 species 1 Spiroplasma culicicola 452 0 376 0 47834 species 1 Spiroplasma kunkelii 504 0 362837 species 1 Spiroplasma cantharicola 0 344 1 Spiroplasma clarkii 2139 species 0 258 Spiroplasma syrphidicola 1 species 216945 0 524 2 no rank 2637901 1914410 species 1 Spiroplasma sp. NBRC 100390 262 0 1 Spiroplasma sp. TU-14 1898044 species 0 262 0 206 Spiroplasma mirum 1 species 2144 Spiroplasma sabaudiense 1 species 216944 0 208 Spiroplasma taiwanense 1 species 2145 0 529 216946 species 1 Spiroplasma turonicum 483 0 0 479 1 Spiroplasma floricola 216937 species 315358 species 1 Spiroplasma eriocheiris 246 0 species 216933 Spiroplasma chrysopicola 1 264 0 367 0 216934 species 1 Spiroplasma corruscae 339 0 2137 species 1 Spiroplasma apis 0 324 1 Spiroplasma citri 2133 species 359 0 216938 species 1 Spiroplasma helicoides Spiroplasma monobiae 1 species 2136 0 328 species 216942 Spiroplasma litorale 1 560 0 1 3592 0 family 18 33925 Entomoplasmataceae 14 genus 16 46238 Entomoplasma 5 1 1052 0 0 347 1 Entomoplasma somnilux 215578 species 0 242 1 Entomoplasma luminosum 214888 species 334 0 species 81459 Entomoplasma melaleucae 1 74700 species 1 Entomoplasma freundtii 113 0 Mesoplasma 8 genus 50 46239 0 1 2522 1 Mesoplasma tabanidae 219745 species 0 325 0 332 Mesoplasma coleopterae 1 species 324078 Mesoplasma florum 1 species 2151 0 632 307 0 species 216427 Mesoplasma chauliocola 1 246 0 species 138853 Mesoplasma lactucae 1 species 2149 Mesoplasma entomophilum 1 372 0 225999 species 1 Mesoplasma syrphidae 258 0 186329 order 1 13 Acholeplasmatales 1 2559 0 2558 1 0 2146 7 family 12 Acholeplasmataceae Acholeplasma 5 6 genus 2147 0 1394 1 463 0 38986 species 1 Acholeplasma palmae 1 Acholeplasma brassicae 61635 species 0 206 340 0 species 2148 Acholeplasma laidlawii 1 379 0 35623 species 1 Acholeplasma oculi 1 1157 0 33926 genus 11 6 Candidatus Phytoplasma 233 0 85632 species group 1 Candidatus Phytoplasma australiense 1 species 59748 0 233 1 species group 85630 0 257 species 37692 Candidatus Phytoplasma mali 1 257 0 0 656 3 species group 85620 0 236 1 Onion yellows phytoplasma 100379 species Maize bushy stunt phytoplasma 1 species 202462 0 197 229545 species 1 Aster yellows witches'-broom phytoplasma 223 0 713063 no rank 2 922 0 species 1911684 Tenericutes bacterium MO-XQ 1 503 0 419 0 1911683 species 1 Tenericutes bacterium MZ-XQ 455 0 no rank 2799557 2 0 455 1 Candidatus Izimaplasma 2 1 genus 1912503 0 454 1 2624196 no rank species 1541959 Candidatus Izimaplasma sp. HR1 1 454 0 129 0 no rank 1859062 2 0 129 1 2 Thermobaculum 262406 3 genus 126 0 166501 species 1 Thermobaculum terrenum 3733 0 phylum 1297 35 3733 1 0 188787 16 class 35 Deinococci order 2762275 3 174 0 0 174 1 3 Trueperaceae 332247 1 family 0 173 1 2 Truepera 332248 2 genus 0 171 Truepera radiovictrix 1 species 332249 1676 1 0 68933 6 order 16 Thermales 15 Thermaceae 188786 family 11 0 1 1670 1 genus 186191 0 102 species 186192 Marinithermus hydrothermalis 1 102 0 0 315 1 3 Meiothermus 65551 4 genus species 277 Meiothermus ruber 1 196 0 1 Meiothermus silvanus 52022 species 0 115 11 genus 270 Thermus 8 1071 1 0 1 no rank 2619321 0 117 0 117 1 Thermus sp. CCB_US3_UF1 1111069 species 121 0 56956 species 1 Thermus brockianus Thermus scotoductus 1 species 37636 0 83 126 0 species 271 Thermus aquaticus 1 species 56957 Thermus oshimai 1 146 0 Thermus thermophilus 1 species 274 0 353 456163 species 1 Thermus parvatiensis 114 0 0 1 171 Oceanithermus 2 genus 5 208447 166 0 187137 species 1 Oceanithermus profundus Deinococcales 15 21 order 118964 0 1867 1 Deinococcaceae 14 10 family 183710 0 1846 1 0 1 1836 13 Deinococcus 1298 genus 25 species 432329 Deinococcus peraridilitoris 1 111 0 120 0 species 68909 Deinococcus geothermalis 1 1299 species 1 Deinococcus radiodurans 133 0 1 2623546 no rank 0 112 112 0 2080419 species 1 Deinococcus sp. NW-56 Deinococcus proteolyticus 1 species 55148 0 255 172 0 species 309887 Deinococcus maricopensis 1 0 191 1 Deinococcus puniceus 1182568 species 151 0 species 502394 Deinococcus gobiensis 1 0 165 1 Deinococcus soli Cha et al. 2016 1309411 species 1 Deinococcus swuensis 1182571 species 0 177 0 134 Deinococcus actinosclerus 1 species 1768108 90 0 species 310783 Deinococcus deserti 1 167 0 phylum 67819 4 0 167 1 4 Fimbriimonadia 1663419 1 class 3 Fimbriimonadales 1663425 1 order 0 166 1 family 1663426 2 165 0 Fimbriimonas 2 genus 1 1005038 0 1 165 164 0 species 1005039 Fimbriimonas ginsengisoli 1 1474 0 200940 phylum 7 67799 class 4 7 Thermodesulfobacteria 1 1474 0 6 Thermodesulfobacteriales 188710 order 6 0 1 1470 1 1464 0 family 7 188711 Thermodesulfobacteriaceae 5 444090 genus 1 227 0 Caldimicrobium thiodismutans 1 species 1653476 0 227 241192 genus 1 208 0 1 Thermodesulfatator indicus 171695 species 0 208 1022 0 1740 genus 2 Thermodesulfobacterium commune 1 species 1741 0 289 0 733 Thermodesulfobacterium geofontis 1 species 1295609 1 926 0 74152 phylum 1 7 Elusimicrobia 178 0 class 641853 2 0 178 2 641854 order 641876 family 1 2 Elusimicrobiaceae 1 178 0 genus 423604 1 177 0 177 0 423605 species 1 Elusimicrobium minutum 496 1 0 447830 1 class 3 Endomicrobia 2 1783344 order 0 495 2 1783343 family 0 495 495 0 1408194 genus 2 0 275 Endomicrobium proavitum 1 species 1408281 1 Candidatus Endomicrobium trichonymphae 1408204 species 0 220 1 no rank 99260 0 251 251 0 species 167965 uncultured Termite group 1 bacterium 1 0 7428 42 phylum 200918 0 7428 1 42 Thermotogae 188708 7 class 588 1 0 1 order 1643946 Kosmotogales 6 5 family 1643948 0 587 Mesotoga 2 genus 1 1184396 0 1 157 1184387 species 1 Mesotoga prima 156 0 3 Kosmotoga 651456 genus 4 0 1 430 species 1330330 Kosmotoga pacifica 1 259 0 0 167 Kosmotoga olearia 1 species 651457 0 2283 1 7 Petrotogales 1643947 4 order 2279 0 family 1643949 6 28236 genus 1 311 0 0 311 Petrotoga mobilis 1 species 69499 3 Marinitoga 160798 22 genus 0 1347 1 Marinitoga piezophila 1 species 149715 0 700 0 625 1 2640159 no rank Marinitoga sp. 1137 1 species 1545835 0 625 2 Defluviitoga 1511648 2 genus 0 621 1 619 0 1006576 species 1 Defluviitoga tunisiensis 1 4550 0 2419 order 11 28 Thermotogales 0 2917 1 10 Fervidobacteriaceae 1643950 10 family 0 797 1 Fervidobacterium 4 6 genus 2422 2424 species 1 Fervidobacterium nodosum 369 0 286 0 species 93466 Fervidobacterium pennivorans 1 1 Fervidobacterium islandicum 2423 species 0 136 19 genus 2420 Thermosipho 5 2110 1 0 0 972 2 2676525 no rank 0 500 Thermosipho sp. 1070 1 species 1437364 472 0 species 1462747 Thermosipho sp. 1063 1 1 Thermosipho africanus 2421 species 0 628 491 0 46541 species 1 Thermosipho melanesiensis 188709 family 7 17 Thermotogaceae 1 1622 0 817 1 0 19 genus 2335 Thermotoga 11 243 0 species 1508420 Thermotoga profunda 1 1 Thermotoga caldifontis 1508419 species 0 59 55 0 species 93929 Thermotoga petrophila 1 species 2336 Thermotoga maritima 1 93 0 2337 species 1 Thermotoga neapolitana 80 0 0 67 Thermotoga naphthophila 1 species 93930 201 0 2631113 no rank 4 species 1157947 Thermotoga sp. Cell2 1 42 0 0 27 1 Thermotoga sp. RQ2 126740 species 126738 species 1 Thermotoga sp. RQ7 77 0 55 0 1157948 species 1 Thermotoga sp. 2812B Pseudothermotoga 5 5 genus 1643951 0 798 1 57487 species 1 Pseudothermotoga hypogea 44 0 276 0 177758 species 1 Pseudothermotoga lettingae 119394 species 1 Pseudothermotoga thermarum 191 0 Pseudothermotoga elfii 1 species 38322 0 282 phylum 154 1224 Proteobacteria 2009 1 795474 0 Oligoflexia 12 5 class 1553900 0 2143 1 order 4 2024979 Bacteriovoracales 6 1 1218 0 0 1 355 Bacteriovoracaceae 3 family 4 263369 0 351 1 Bacteriovorax 2 3 genus 146784 348 0 species 960 Bacteriovorax stolpii 1 859 0 family 1652132 2 0 1 859 2 Halobacteriovorax 1652133 genus 2 857 0 species 97084 Halobacteriovorax marinus 1 0 920 1 5 Bdellovibrionales 213481 1 order 1 919 0 213483 family 5 4 Bdellovibrionaceae 0 914 1 Bdellovibrio 3 2 genus 958 314 0 453816 species 1 Bdellovibrio exovorus species 959 Bdellovibrio bacteriovorus 1 598 0 0 341 1 6 Zetaproteobacteria 580370 1 class 0 340 1 Mariprofundales 5 8 order 580371 1 332 0 580372 family 3 4 Mariprofundaceae 1 329 0 genus 9 377315 Mariprofundus 3 157 0 species 1921087 Mariprofundus ferrinatatus 1 0 163 Mariprofundus aestuarium 1 species 1921086 class 84 28216 Betaproteobacteria 343 1 103190 0 33809 no rank 2 458 0 250 0 543913 species 1 beta proteobacterium CB Betaproteobacteria bacterium GR16-43 1 species 1904640 0 208 34 Neisseriales 206351 order 57 0 1 5791 0 1920 1 Chromobacteriaceae 12 25 family 1499392 genus 2 168470 Laribacter 2 1 187 0 Laribacter hongkongensis 1 species 168471 0 185 220 0 568394 genus 1 no rank 2642558 1 220 0 Pseudogulbenkiania sp. NH8B 1 species 748280 0 220 1123 0 90153 no rank 4 0 1 1123 Chromobacterium 4 genus 32 535 536 species 1 Chromobacterium violaceum 295 0 0 297 1 no rank 2641838 297 0 2059672 species 1 Chromobacterium sp. ATCC 53434 species 1108595 Chromobacterium vaccinii 1 499 0 187 1 genus 2 Aquaspirillum 149 1 0 0 148 1 2620219 no rank 1 Aquaspirillum sp. LM1 1938604 species 0 148 216 1 0 885864 3 genus 2 Jeongeupia 2619593 no rank 1 213 0 0 213 1 Jeongeupia sp. USM3 1906741 species 481 family 16 21 Neisseriaceae 1 3814 0 59 6 genus 3 Vitreoscilla 450 1 0 Vitreoscilla filiformis 1 species 63 0 129 315 0 2627922 no rank 1 Vitreoscilla sp. C1 1 species 96942 0 315 162 1 0 538 1 genus 2 Eikenella 161 0 species 539 Eikenella corrodens 1 421605 no rank 1 573 0 573 0 2052837 species 1 Neisseriaceae bacterium DSM 100970 genus 1193515 1 488 0 species 1196083 Snodgrassella alvi 1 488 0 genus 23 482 Neisseria 12 1 1896 0 0 210 Neisseria gonorrhoeae 1 species 485 219 0 species 486 Neisseria lactamica 1 0 161 Neisseria weaveri 1 species 28091 124 0 326523 species 1 Neisseria zoodegmatis 87 0 488 species 1 Neisseria mucosa 0 132 Neisseria elongata 1 species 495 species 487 Neisseria meningitidis 1 575 0 0 86 1 Neisseria sp. 10023 1853278 species 0 196 2 no rank 2623750 0 126 1 Neisseria sp. KEM232 655307 species Neisseria sp. 10022 1 species 1853276 0 70 83 0 species 490 Neisseria sicca 1 229 0 genus 71 1 Simonsiella muelleri 1 species 72 0 229 42 Nitrosomonadales 32003 order 65 0 1 5714 3 Thiobacillaceae 2008790 family 1 0 1 174 2 Thiobacillus 919 genus 4 0 1 173 169 0 36861 species 1 Thiobacillus denitrificans family 2772226 4 310 0 genus 2 1778653 Sulfuriferula 2 1 116 0 114 0 no rank 2637784 1 1 Sulfuriferula sp. AH1 1985873 species 0 114 Sulfuricella 2 3 genus 935200 0 194 1 species 649841 Sulfuricella denitrificans 1 191 0 0 1968 1 14 Methylophilaceae 32011 15 family 0 848 1 3 Candidatus Methylopumilus 1679002 4 genus 1 Candidatus Methylopumilus turicensis 1581680 species 0 235 0 609 1 Candidatus Methylopumilus planktonicus 1581557 species genus 3 16 Methylophilus 2 1 136 0 no rank 2630143 1 133 0 species 1662285 Methylophilus sp. TWE2 1 133 0 Methylovorus 3 9 genus 81682 0 215 1 101 0 2634027 no rank 1 887061 species 1 Methylovorus sp. MP688 101 0 266009 species 1 Methylovorus glucosotrophus 105 0 140 1 0 404 2 genus 2 Methylobacillus 0 138 1 Methylobacillus flagellatus 405 species 614 1 0 359407 2 genus 3 Methylotenera 207 0 359408 species 1 Methylotenera mobilis species 1055487 Methylotenera versatilis 1 405 0 0 378 1 5 Sterolibacteriaceae 2008793 5 family Methyloversatilis 2 6 genus 378210 0 167 1 161 0 no rank 2639971 1 species 1842540 Methyloversatilis sp. RAC08 1 161 0 genus 4 1054211 Sulfuritalea 2 1 206 0 Sulfuritalea hydrogenivorans 1 species 748811 0 202 0 370 1 Gallionellaceae 4 7 family 90627 genus 1 96 Gallionella 2 1 203 0 202 0 species 370405 Gallionella capsiferriformans 1 0 160 1 genus 314343 160 0 species 63745 Sideroxydans lithotrophicus 1 206379 3 family 11 Nitrosomonadaceae 2449 1 0 0 2088 1 Nitrosomonas 7 9 genus 914 Nitrosomonas europaea 1 species 915 0 170 1 Nitrosomonas eutropha 916 species 0 270 no rank 2609265 2 851 0 0 524 1 Nitrosomonas sp. AL212 153948 species 261292 species 1 Nitrosomonas sp. Is79A3 327 0 0 369 1 Nitrosomonas ureae 44577 species 0 419 1 Nitrosomonas communis 44574 species 358 0 35798 genus 3 Nitrosospira briensis 1 species 35799 0 101 Nitrosospira lacus 1 species 1288494 0 145 1 Nitrosospira multiformis 1231 species 0 112 80840 638 order 231 Burkholderiales 84062 1 0 0 6764 1 28 Oxalobacteraceae 75682 36 family 1 genus 846 0 122 Oxalobacter formigenes 1 species 847 0 122 963 genus 22 6 Herbaspirillum 1 2066 0 1 Herbaspirillum rubrisubalbicans 80842 species 0 240 92645 species 1 Herbaspirillum frisingense 268 0 species 964 Herbaspirillum seropedicae 1 560 0 341045 species 1 Herbaspirillum hiltneri 747 0 1 2624150 no rank 0 229 2025949 species 1 Herbaspirillum sp. meg3 229 0 0 1 1626 7 Janthinobacterium 29580 genus 38 4 2610881 no rank 0 950 species 375286 Janthinobacterium sp. Marseille 1 159 0 Janthinobacterium sp. 1_2014MBL_MicDiv 1 species 1644131 0 301 1236179 species 1 Janthinobacterium sp. B9-8 227 0 1 Janthinobacterium sp. LM6 1938606 species 0 263 1 Janthinobacterium agaricidamnosum 55508 species 0 252 Janthinobacterium svalbardensis 1 species 368607 0 386 Herminiimonas 3 genus 4 303379 0 1 366 175 0 species 1809410 Herminiimonas arsenitoxidans 1 0 187 1 Herminiimonas arsenicoxydans 204773 species 0 1 1030 Collimonas 4 genus 17 202907 456 0 279058 species 1 Collimonas arenae species 158899 Collimonas fungivorans 1 293 0 279113 species 1 Collimonas pratensis 264 0 1518 1 0 149698 28 genus 6 Massilia 0 571 2 2609279 no rank Massilia sp. NR 4-1 1 species 1678028 0 251 0 320 1 Massilia sp. WG5 1707785 species 292 0 species 2072590 Massilia sp. ZMN-3 1 306 0 species 2045208 Massilia sp. B2 1 Massilia putida 1 species 1141883 0 321 43 Alcaligenaceae 506 55 family 0 10668 1 0 1 914 Taylorella 3 genus 4 29574 0 413 1 Taylorella asinigenitalis 84590 species 1 Taylorella equigenitalis 29575 species 0 497 1 1921582 genus 0 199 0 199 1 Orrella dioscoreae 1851544 species 0 183 1 2 Oligella 90243 3 genus 90245 species 1 Oligella urethralis 180 0 359336 genus 5 2 Castellaniella 1 193 0 Castellaniella defragrans 1 species 75697 0 188 Alcaligenes 2 genus 6 507 0 1 1270 Alcaligenes faecalis 1 species 511 0 1264 3 Advenella 290425 genus 4 0 1 424 species 310575 Advenella kashmirensis 1 190 0 Advenella mimigardefordensis 1 species 302406 0 230 1 2647 0 genus 54 222 Achromobacter 6 0 461 Achromobacter spanius 1 species 217203 0 257 1 2626865 no rank species 1758194 Achromobacter sp. AONIH1 1 257 0 species 85698 Achromobacter xylosoxidans 1 1039 0 1 Achromobacter insolitus 217204 species 0 272 32002 species 1 Achromobacter denitrificans 564 0 4066 1 0 517 98 genus 17 Bordetella 1 Bordetella hinzii 103855 species 0 172 0 194 Bordetella trematum 1 species 123899 0 322 1 Bordetella parapertussis 519 species 0 277 1 Bordetella genomosp. 6 463024 species species 1416806 Bordetella genomosp. 8 1 272 0 1 Bordetella pertussis 520 species 0 374 0 546 1 Bordetella bronchiseptica 518 species 1 Bordetella flabilis 463014 species 0 289 0 149 1 no rank 2630031 Bordetella sp. H567 1 species 1697043 0 149 0 263 1 Bordetella genomosp. 13 463040 species Bordetella petrii 1 species 94624 0 214 122 0 521 species 1 Bordetella avium 35814 species 1 Bordetella holmesii 162 0 species 1331258 Bordetella pseudohinzii 1 212 0 0 169 1 Bordetella genomosp. 9 1416803 species 231 0 463025 species 1 Bordetella bronchialis 305976 2 genus 2 Pusillimonas 198 1 0 2640016 no rank 1 196 0 1007105 species 1 Pusillimonas sp. T7-7 196 0 1 283 0 1472344 genus 2 2 Basilea 281 0 species 1472345 Basilea psittacipulmonis 1 0 236 1 Paenalcaligenes 2 2 genus 1100891 0 234 1 Paenalcaligenes hominis 643674 species 1 46383 0 family 150 119060 Burkholderiaceae 84 Cupriavidus 9 genus 65 106589 0 1 5814 0 1468 2 no rank 2640874 876364 species 1 Cupriavidus sp. USMAA2-4 793 0 1389192 species 1 Cupriavidus sp. USMAHM13 675 0 1733 0 species 119219 Cupriavidus metallidurans 1 0 334 Cupriavidus gilardii 1 species 82541 106590 species 1 Cupriavidus necator 443 0 557 0 367825 species 1 Cupriavidus sp. USMAA1020 68895 species 1 Cupriavidus basilensis 942 0 0 272 1 Cupriavidus pinatubonensis 248026 species genus 545 32008 Burkholderia 41 1 27189 0 10654 0 species group 87882 19 521 0 152480 species 1 Burkholderia ambifaria 195 0 species 152500 Burkholderia dolosa 1 87883 species 1 Burkholderia multivorans 684 0 0 720 1 Burkholderia latens 488446 species 482957 species 1 Burkholderia lata 1164 0 Burkholderia pyrrocinia 1 species 60550 0 214 488731 species 1 Burkholderia seminalis 300 0 0 247 1 Burkholderia stagnalis 1503054 species 261 0 265293 species 1 [Pseudomonas] mesoacidophila Burkholderia ubonensis 1 species 101571 0 954 Burkholderia vietnamiensis 1 species 60552 0 674 1496 0 292 species 1 Burkholderia cepacia 233 0 species 488732 Burkholderia diffusa 1 species 1207504 Burkholderia pseudomultivorans 1 274 0 1 Burkholderia metallica 488729 species 0 238 1381 0 species 95486 Burkholderia cenocepacia 1 1 Burkholderia contaminans 488447 species 0 424 208 0 species 1503055 Burkholderia territorii 1 Burkholderia stabilis 1 species 95485 0 466 1 Burkholderia glumae 337 species 0 850 0 2979 11 2613784 no rank 0 262 Burkholderia sp. Bp5365 1 species 1740162 Burkholderia sp. CCGE1003 1 species 640512 0 360 0 255 1 Burkholderia sp. 2002721687 1468409 species 0 252 1 Burkholderia sp. KJ006 416344 species 0 138 Burkholderia sp. PAMC 26561 1 species 1795043 species 1740163 Burkholderia sp. Bp7605 1 170 0 1 Burkholderia sp. RPE67 758796 species 0 393 132 0 species 1795874 Burkholderia sp. PAMC 28687 1 324 0 1678678 species 1 Burkholderia sp. HB1 329 0 640510 species 1 Burkholderia sp. CCGE1001 364 0 1097668 species 1 Burkholderia sp. YI23 species group 111527 7 11165 0 0 6961 Burkholderia pseudomallei 1 species 28450 0 919 Burkholderia thailandensis 1 species 57975 504 0 species 1637837 Burkholderia sp. MSMB0266 1 Burkholderia sp. MSMB617WGS 1 species 1637831 0 561 1 Burkholderia sp. MSMB0852 1637841 species 0 602 0 627 1 Burkholderia oklahomensis 342113 species 1 Burkholderia mallei 13373 species 0 991 358 0 species 41899 Burkholderia plantarii 1 638 0 28095 species 1 Burkholderia gladioli 1 2775 0 genus 32 48736 Ralstonia 5 0 259 1 Ralstonia insidiosa 190721 species 391 0 105219 species 1 Ralstonia mannitolilytica 0 1649 1 Ralstonia solanacearum 305 species species 329 Ralstonia pickettii 1 444 0 1 1827195 genus 0 309 309 0 species 758793 Burkholderia sp. RPE64 1 4 Polynucleobacter 44013 7 genus 0 833 1 1835254 species 1 Polynucleobacter duraquae 244 0 1 Polynucleobacter necessarius 576610 species 0 185 Polynucleobacter asymbioticus 1 species 576611 0 397 genus 2571159 1 162 0 162 0 412963 species 1 Paraburkholderia rhizoxinica 4950 1 0 1822464 49 genus 12 Paraburkholderia 0 323 Paraburkholderia hospita 1 species 169430 0 301 Paraburkholderia phenoliruptrix 1 species 252970 134537 species 1 Paraburkholderia fungorum 375 0 387 0 148447 species 1 Paraburkholderia phymatum 0 1184 1 Paraburkholderia phytofirmans 261302 species 1 Paraburkholderia terrae 311230 species 0 264 1 Paraburkholderia sprentiae 948107 species 0 315 Paraburkholderia aromaticivorans 1 species 2026199 0 341 0 372 1 Paraburkholderia xenovorans 36873 species 363 0 2615204 no rank 1 363 0 1926494 species 1 Paraburkholderia sp. SOS3 0 676 Paraburkholderia caribensis 1 species 75105 1 4201 0 93217 genus 39 10 Pandoraea 0 444 Pandoraea pnomenusa 1 species 93220 656179 species 1 Pandoraea faecigallinarum 184 0 0 253 1 Pandoraea apista 93218 species Pandoraea vervacti 1 species 656178 0 220 0 1764 Pandoraea pulmonicola 1 species 93221 Pandoraea oxalativorans 1 species 573737 0 431 0 188 Pandoraea sputorum 1 species 93222 1 Pandoraea norimbergensis 93219 species 0 497 181 0 445709 species 1 Pandoraea thiooxydans no rank 224471 17 3579 0 2 Rhizobacter 212743 genus 7 0 1 327 0 320 Rhizobacter gummiphilus 1 species 946333 435 1 0 318147 4 genus 2 Paucibacter 1 2642959 no rank 0 431 0 431 Paucibacter sp. KCTC 42545 1 species 1768242 0 1 574 Roseateles 2 genus 2 93681 1 Roseateles depolymerans 76731 species 0 572 413882 species 1 [Polyangium] brachysporum 607 0 Methylibium 2 genus 3 316612 0 1 235 species 105560 Methylibium petroleiphilum 1 232 0 5 genus 88 Leptothrix 2 306 1 0 Leptothrix cholodnii 1 species 34029 0 301 0 1 321 Thiomonas 2 genus 5 32012 0 316 1 Thiomonas intermedia 926 species 0 370 1 Rubrivivax 2 14 genus 28067 356 0 28068 species 1 Rubrivivax gelatinosus 0 404 1 2 Mitsuaria 65047 6 genus 0 398 1 no rank 2648776 398 0 1658665 species 1 Mitsuaria sp. 7 0 368 2 80841 no rank 153 0 species 1469502 Burkholderiales bacterium GJ-E10 1 215 0 1834205 species 1 Burkholderiales bacterium YL45 80864 family 108 56 Comamonadaceae 1 15662 0 0 1 1679 Delftia 5 genus 33 80865 Delftia acidovorans 1 species 80866 0 372 349 0 180282 species 1 Delftia tsuruhatensis 2613839 no rank 2 925 0 521 0 742013 species 1 Delftia sp. Cs1-4 0 404 1 Delftia sp. HK171 1920191 species 0 261 1 Limnohabitans 3 1 genus 665874 0 260 2 2626134 no rank Limnohabitans sp. 63ED37-2 1 species 1678128 0 155 0 105 Limnohabitans sp. 103DPR2 1 species 1678129 311 1 0 5 genus 201096 Alicycliphilus 2 species 179636 Alicycliphilus denitrificans 1 306 0 52972 1 genus 3 Polaromonas 1661 1 0 1 Polaromonas naphthalenivorans 216465 species 0 599 2638319 no rank 1 1061 0 1061 0 species 296591 Polaromonas sp. JS666 1 2 genus 174951 Ramlibacter 2 465 1 0 1 Ramlibacter tataouinensis 94132 species 0 463 34072 21 genus 5 Variovorax 3733 1 0 663243 no rank 2 938 0 0 514 1 Variovorax sp. PAMC 28711 1795631 species 2126319 species 1 Variovorax sp. PMC12 424 0 1 Variovorax boronicumulans 436515 species 0 321 0 2453 1 Variovorax paradoxus 34073 species 0 1 867 5 Rhodoferax 28065 genus 6 species 81479 Rhodoferax antarcticus 1 261 0 Rhodoferax saidenbachensis 1 species 1484693 0 138 Rhodoferax ferrireducens 1 species 192843 0 197 1 Rhodoferax koreense 1842727 species 0 265 4 genus 47420 Hydrogenophaga 4 776 1 0 0 547 2 no rank 2610897 0 286 Hydrogenophaga sp. PBC 1 species 795665 261 0 1842537 species 1 Hydrogenophaga sp. RAC07 0 225 1 Hydrogenophaga crassostreae 1763535 species 1 608 0 genus 1 364316 Verminephrobacter 2 1 Verminephrobacter eiseniae 364317 species 0 607 0 345 2 2490452 genus 178 0 species 1458426 Comamonadaceae bacterium B1 1 Comamonadaceae bacterium A1 1 species 1458425 0 167 1 1609 0 genus 5 283 Comamonas 4 species 225992 Comamonas kerstersii 1 520 0 Comamonas testosteroni 1 species 285 0 434 1082851 species 1 Comamonas serinivorans 650 0 338 0 genus 219181 2 2645081 no rank 1 140 0 species 1658672 Ottowia sp. oral taxon 894 1 140 0 0 198 1 Ottowia sp. KADR8-3 2109914 species Melaminivora 2 genus 9 1649468 0 1 227 218 0 no rank 2641902 1 218 0 2109913 species 1 Melaminivora sp. SC2-9 genus 50 12916 Acidovorax 9 1 1940 0 species 553814 Acidovorax sp. NA3 1 155 0 4 2684926 no rank 0 936 0 360 Acidovorax sp. T1 1 species 1858609 199 0 358220 species 1 Acidovorax sp. KKS102 0 174 1 Acidovorax sp. RAC01 1842533 species 0 203 Acidovorax sp. JS42 1 species 232721 248 0 species 80869 Acidovorax citrulli 1 721785 species 1 Acidovorax ebreus 213 0 0 338 1 Acidovorax avenae 80867 species 2 Simplicispira 352450 2 genus 0 135 1 1 Simplicispira sp. SC1-8 2109915 species 0 133 0 198 1 genus 2678886 1 Melaminivora sp. SC2-7 2116657 species 0 198 232 0 genus 1436289 1 Candidatus Symbiobacter mobilis 1 species 1436290 0 232 169 0 238749 genus 1 0 169 Diaphorobacter polyhydroxybutyrativorans 1 species 1546149 22 Rhodocyclales 206389 19 order 0 2974 1 2008795 family 4 3 Azonexaceae 1 197 0 Dechloromonas 2 genus 1 73029 0 1 193 0 192 1 Dechloromonas aromatica 259537 species 0 1 2216 12 Zoogloeaceae 2008794 family 33 Azoarcus 5 genus 15 12960 0 1 1063 Azoarcus olearius 1 species 418699 0 230 0 597 2 2629479 no rank 0 362 1 Azoarcus sp. CIB 198107 species 0 235 Azoarcus sp. KH32C 1 species 748247 1 Azoarcus sp. SY39 2067960 species 0 221 genus 13 33057 Thauera 6 1 1120 0 0 535 2 no rank 2609274 Thauera sp. K11 1 species 2005884 0 286 0 249 Thauera sp. MZ1T 1 species 85643 0 190 Thauera chlorobenzoica 1 species 96773 0 201 Thauera humireducens 1 species 1134435 59405 species 1 Thauera aromatica 181 0 Rhodocyclaceae 6 13 family 75787 0 542 1 0 1 191 2 Azospira 146937 genus 5 Azospira oryzae 1 species 146939 0 186 151 0 no rank 75788 1 0 151 1 Rhodocyclaceae bacterium 1898103 species Aromatoleum 2 genus 5 551759 0 1 187 0 182 Aromatoleum aromaticum 1 species 551760 4107 0 no rank 119066 11 0 1 3111 Kinetoplastibacterium 6 genus 12 33055 1 Candidatus Kinetoplastibacterium desouzaii 994692 species 0 804 0 747 1 Candidatus Kinetoplastibacterium crithidii 33056 species 994695 species 1 Candidatus Kinetoplastibacterium galatii 512 0 0 587 Candidatus Kinetoplastibacterium oncopeltii 1 species 994696 species 233181 Kinetoplastibacterium blastocrithidii 1 449 0 1 genus 189384 0 62 62 0 189385 species 1 Candidatus Tremblaya princeps 327159 genus 1 223 0 1 Candidatus Accumulibacter phosphatis 327160 species 0 223 0 577 1 Candidatus Profftella 2 4 genus 1381133 species 669502 Candidatus Profftella armatura 1 573 0 1 genus 1301080 0 134 0 134 Candidatus Nasuia deltocephalinicola 1 species 1160784 0 346152 1 886 Gammaproteobacteria 1236 627 class 135614 88 order 51 Xanthomonadales 28217 1 0 13 family 1775411 Rhodanobacteraceae 13 1759 1 0 70411 genus 1 180 0 81475 species 1 Frateuria aurantia 180 0 0 1 314 2 Rhodanobacter 75309 genus 5 species 666685 Rhodanobacter denitrificans 1 309 0 169 0 2233801 genus 1 Xanthomonadales bacterium D13 1 species 2021234 0 169 Dyella 4 8 genus 231454 0 616 1 Dyella jiangningensis 1 species 1379159 0 204 182 0 445710 species 1 Dyella thiooxydans 1 Dyella japonica 231455 species 0 222 242605 7 genus 2 Luteibacter 171 1 0 0 164 Luteibacter rhizovicinus 1 species 242606 296 1 0 1 genus 323413 Dokdonella 2 295 0 species 323415 Dokdonella koreensis 1 0 26370 1 37 Xanthomonadaceae 32033 136 family 0 1 13626 17 Xanthomonas 338 genus 155 species 347 Xanthomonas oryzae 1 2642 0 530 0 48664 species 1 Xanthomonas fragariae 1 Xanthomonas perforans 442694 species 0 208 236 0 species 1985254 Xanthomonas phaseoli 1 Xanthomonas vasicola 1 species 56459 0 161 289 0 56458 species 1 Xanthomonas sacchari 1 Xanthomonas axonopodis 53413 species 0 203 299 0 56454 species 1 Xanthomonas hortorum 0 454 1 Xanthomonas vesicatoria 56460 species 3008 0 species group 643453 2 Xanthomonas fuscans 1 species 366648 0 484 species 346 Xanthomonas citri 1 2524 0 Xanthomonas albilineans 1 species 29447 0 233 792 0 species 343 Xanthomonas translucens 1 0 252 1 Xanthomonas alfalfae 366650 species 0 355 1 Xanthomonas euvesicatoria 456327 species 0 3809 1 Xanthomonas campestris 339 species 1 genus 83614 0 216 216 0 2006110 species 1 Luteimonas sp. 100111 0 2156 1 genus 2370 species 2371 Xylella fastidiosa 1 2156 0 0 1 5021 9 Stenotrophomonas 40323 genus 64 0 207 Stenotrophomonas rhizophila 1 species 216778 0 470 Stenotrophomonas acidaminiphila 1 species 128780 1453 0 no rank 196198 4 0 395 Stenotrophomonas sp. WZN-1 1 species 2005046 169 0 species 1904944 Stenotrophomonas sp. LM091 1 465 0 1827305 species 1 Stenotrophomonas sp. MYb57 0 424 Stenotrophomonas sp. KCTC 12332 1 species 1793721 0 465 Stenotrophomonas nitritireducens 1 species 83617 0 2362 1 species group 995085 Stenotrophomonas maltophilia 1 species 40324 0 2362 Lysobacter 5 6 genus 68 0 4573 1 1 Lysobacter capsici 435897 species 0 2187 0 610 1 Lysobacter gummosus 262324 species 1416 0 84531 species 1 Lysobacter antibioticus Lysobacter enzymogenes 1 species 69 0 354 2 genus 83618 Pseudoxanthomonas 3 642 1 0 Pseudoxanthomonas suwonensis 1 species 314722 0 456 species 415229 Pseudoxanthomonas spadix 1 184 0 607 0 33811 no rank 2 0 339 gamma proteobacterium HdN1 1 species 83406 0 268 1 endosymbiont of unidentified scaly snail isolate Monju 1248727 species 0 1 9768 Chromatiales 52 order 64 135613 27 family 1046 Chromatiaceae 18 4890 1 0 0 1 229 Allochromatium 2 genus 2 85072 Allochromatium vinosum 1 species 1049 0 227 0 488 1 Candidatus Nitrosoglobus 2 5 genus 1980513 species 1630141 Candidatus Nitrosoglobus terrae 1 483 0 0 1611 1 Thiodictyon 2 21 genus 53392 Candidatus Thiodictyon syntrophicum 1 species 1166950 0 1590 1 1366 0 1227 genus 16 4 Nitrosococcus species 1229 Nitrosococcus oceani 1 249 0 473531 species 1 Nitrosococcus watsonii 846 0 Nitrosococcus halophilus 1 species 133539 0 255 1 281 0 85076 genus 4 2 Marichromatium Marichromatium purpuratum 1 species 37487 0 277 0 1 319 Thioflavicoccus 2 genus 2 156885 317 0 80679 species 1 Thioflavicoccus mobilis 319 1 0 1 genus 13724 Thiocystis 2 0 318 Thiocystis violascens 1 species 73141 250 0 82569 no rank 1 250 0 species 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a 1 0 2903 1 Ectothiorhodospiraceae 18 32 family 72276 Thioalkalivibrio 6 40 genus 106633 0 1427 1 225 0 no rank 2621013 1 0 225 1 Thioalkalivibrio sp. K90mix 396595 species Thioalkalivibrio nitratireducens 1 species 186931 0 240 246 0 108010 species 1 Thioalkalivibrio paradoxus 0 197 Thioalkalivibrio versutus 1 species 106634 1033854 species 1 Thioalkalivibrio sulfidiphilus 479 0 0 1 386 Spiribacter 3 genus 2 1335745 1335746 species 1 Spiribacter salinus 166 0 1 Spiribacter curvatus 1335757 species 0 218 0 178 1 Halorhodospira 2 2 genus 85108 species 1053 Halorhodospira halophila 1 176 0 1765964 2 genus 2 Acidihalobacter 406 1 0 160660 species 1 Acidihalobacter prosperus 404 0 1051 4 genus 2 Ectothiorhodospira 234 1 0 0 230 1 2684909 no rank 230 0 species 1442136 Ectothiorhodospira sp. BSL-9 1 2 Alkalilimnicola 133193 4 genus 0 240 1 species 351052 Alkalilimnicola ehrlichii 1 236 0 304 1 0 1676141 5 family 3 Wenzhouxiangellaceae 1676142 9 genus 2 Wenzhouxiangella 299 1 0 290 0 1579979 species 1 Wenzhouxiangella marina 0 1 333 3 Woeseiaceae 1738654 family 1 0 1 332 Woeseia 2 genus 3 1738655 329 0 species 1548547 Woeseia oceani 1 1 388 0 255526 family 2 4 Halothiobacillaceae 0 386 1 3 Halothiobacillus 109262 14 genus 927 species 1 Halothiobacillus neapolitanus 185 0 no rank 2636392 1 187 0 species 1860122 Halothiobacillus sp. LS2 1 187 0 0 304 2 no rank 451214 Thiohalobacter 2 4 genus 1273155 0 304 1 species 585455 Thiohalobacter thiocyanaticus 1 300 0 582 1 0 449719 5 family 3 Granulosicoccaceae 0 577 1 2 Granulosicoccus 437504 19 genus 1 Granulosicoccus antarcticus 437505 species 0 558 order 1240482 5 1423 0 Orbaceae 5 family 4 1240483 0 1 1423 genus 2 1193503 Gilliamella 2 1 800 0 Gilliamella apicola 1 species 1196095 0 798 Frischella 2 genus 4 1335631 0 1 619 species 1267021 Frischella perrara 1 615 0 605 1 0 3 order 1692040 Acidiferrobacterales 6 5 Acidiferrobacteraceae 1692041 8 family 0 602 1 417 1 0 1692042 1 genus 2 Sulfurifustis 0 416 Sulfurifustis variabilis 1 species 1675686 0 1 177 2 Sulfuricaulis 1744881 genus 2 175 0 1620215 species 1 Sulfuricaulis limicola 4 Nevskiales 1775403 2 order 0 205 1 2 2689614 family 0 201 0 1 201 Steroidobacter 2 genus 8 469322 species 465721 Steroidobacter denitrificans 1 193 0 0 2 1 Sinobacteraceae 568386 family 72273 15 order 35 Thiotrichales 22754 1 0 5 Thiotrichaceae 135617 29 family 0 1588 1 836 1 0 1 genus 40751 Thioploca 2 0 835 1 Thioploca ingrica 40754 species 1 723 0 1021 genus 4 2 Beggiatoa Beggiatoa leptomitoformis 1 species 288004 0 719 0 1 15664 15 Francisellaceae 34064 family 10 0 14916 1 Francisella 12 138 genus 262 0 811 1 Francisella hispaniensis 622488 species 28110 species 1 Francisella philomiragia 1803 0 1 Francisella halioticida 549298 species 0 3622 Francisella persica 1 species 954 0 626 0 1013 Francisella sp. TX077310 1 species 573570 1477 0 2610885 no rank 2 475375 species 1 Francisella sp. MA067296 693 0 784 0 1547445 species 1 Francisella sp. FSC1006 0 2603 Francisella tularensis 1 species 263 0 1170 1 Francisella noatunensis 657445 species species 1542390 Francisella sp. CA97-1460 1 944 0 species 573569 Francisella sp. TX077308 1 709 0 2 genus 1869285 Allofrancisella 2 738 1 0 0 736 Allofrancisella guangzhouensis 1 species 594679 0 5487 1 14 Piscirickettsiaceae 135616 39 family genus 3 1237 Piscirickettsia 2 1 967 0 species 1238 Piscirickettsia salmonis 1 964 0 0 277 1 28884 genus 277 0 39765 species 1 Hydrogenovibrio crunogenus Cycloclasticus 4 33 genus 34067 0 2866 1 species 1329899 Cycloclasticus zancles 1 856 0 1977 0 2621467 no rank 2 1 Cycloclasticus sp. PY97N 728003 species 0 955 1 Cycloclasticus sp. P1 385025 species 0 1022 1 832 0 40222 genus 11 3 Methylophaga 0 447 Methylophaga nitratireducenticrescens 1 species 754476 0 374 1 Methylophaga frappieri 754477 species 3 Thiomicrospira 933 genus 4 0 1 506 266 0 92245 species 1 Thiomicrospira aerophila 147268 species 1 Thiomicrospira cyclica 236 0 0 1 9566 32 Pasteurellales 135625 order 10 9556 1 0 62 family 712 Pasteurellaceae 31 523 1 0 2 genus 2094023 Glaesserella 2 521 0 species 738 Glaesserella parasuis 1 794 1 0 75984 4 genus 4 Mannheimia 194 0 no rank 2645054 1 Mannheimia sp. USDA-ARS-USMARC-1261 1 species 1432056 0 194 species 75985 Mannheimia haemolytica 1 277 0 0 319 1 Mannheimia varigena 85404 species 0 342 1 genus 155493 342 0 species 750 Gallibacterium anatis 1 3 Aggregatibacter 416916 genus 3 0 1 612 0 344 Aggregatibacter actinomycetemcomitans 1 species 714 0 265 Aggregatibacter aphrophilus 1 species 732 1 337 0 genus 1 476528 Bibersteinia 2 336 0 species 47735 Bibersteinia trehalosi 1 1 171 0 genus 2 697331 Basfia 2 169 0 157673 species 1 [Mannheimia] succiniciproducens 3 Pasteurella 745 genus 8 0 1 1674 1 Pasteurella dagmatis 754 species 0 420 species 747 Pasteurella multocida 1 1246 0 2 Histophilus 214906 1 genus 0 447 1 0 446 1 Histophilus somni 731 species 0 1 3806 6 Haemophilus 724 genus 15 0 202 Haemophilus pittmaniae 1 species 249188 0 837 1 [Haemophilus] ducreyi 730 species 0 264 Haemophilus parainfluenzae 1 species 729 1 Haemophilus influenzae 727 species 0 2234 1 no rank 2609962 0 254 1 Haemophilus sp. oral taxon 036 712310 species 0 254 Actinobacillus 5 2 genus 713 0 788 1 715 species 1 Actinobacillus pleuropneumoniae 252 0 0 187 Actinobacillus suis 1 species 716 0 216 1 Actinobacillus equuli 718 species 67854 species 1 Actinobacillus succinogenes 131 0 0 1 49523 102 Alteromonadales 135622 order 126 0 825 5 family 267893 825 1 0 18 genus 135575 Idiomarina 5 250 0 species 135577 Idiomarina loihiensis 1 0 206 1 Idiomarina piscisalsi 1096243 species 0 351 2 no rank 2614829 2055892 species 1 Idiomarina sp. X4 187 0 164 0 species 2100422 Idiomarina sp. OT37-5b 1 1 1574 0 family 5 267894 Psychromonadaceae 4 3 Psychromonas 67572 2 genus 0 1569 1 Psychromonas ingrahamii 1 species 357794 0 801 1 no rank 2614957 0 766 1 Psychromonas sp. CNPT3 314282 species 0 766 12 family 267891 Moritellaceae 3 790 1 0 0 1 778 Moritella 2 genus 2 58050 0 776 1 Moritella viscosa 80854 species 28 Alteromonadaceae 72275 family 34 0 1 10361 genus 58 2742 Marinobacter 10 1 2701 0 0 197 Marinobacter similis 1 species 1420916 979 0 no rank 83889 3 0 459 1 Marinobacter sp. CP1 1671721 species species 490759 Marinobacter sp. BSs20148 1 274 0 1 Marinobacter sp. LQ44 1749259 species 0 246 278 0 species 1420917 Marinobacter salarius 1 267 0 species 330734 Marinobacter psychrophilus 1 species 2743 Marinobacter hydrocarbonoclasticus 1 376 0 species 1874317 Marinobacter salinus 1 208 0 338 0 1033846 species 1 Marinobacter adhaerens 431 0 genus 1751872 1 431 0 species 1526571 Lacimicrobium alkaliphilum 1 4873 1 0 50 genus 226 Alteromonas 10 Alteromonas stellipolaris 1 species 233316 0 460 0 481 1 Alteromonas australica 589873 species 0 1127 1 Alteromonas macleodii 28108 species 1 Alteromonas naphthalenivorans 715451 species 0 378 no rank 2614992 3 1040 0 0 374 Alteromonas sp. RW2A1 1 species 1917158 species 2058133 Alteromonas sp. MB-3u-76 1 340 0 326 0 species 1777491 Alteromonas sp. Mac1 1 1 Alteromonas mediterranea 314275 species 0 951 1 Alteromonas addita 287094 species 0 386 261825 genus 1 294 0 294 0 species 680279 Agarivorans gilvus 1 3 Glaciecola 89404 2 genus 0 987 1 1 2618684 no rank 0 456 0 456 1 Glaciecola sp. 4H-3-7+YE-5 983545 species 529 0 species 300231 Glaciecola nitratireducens 1 Paraglaciecola 2 genus 1 1621534 0 1 1041 species 326544 Paraglaciecola psychrophila 1 1040 0 Colwelliaceae 9 family 15 267889 0 1 5301 Colwellia 6 genus 18 28228 0 1 4675 28229 species 1 Colwellia psychrerythraea 856 0 Colwellia beringensis 1 species 1967665 0 1074 0 2727 3 196834 no rank 0 774 Colwellia sp. PAMC 20917 1 species 1816218 Colwellia sp. PAMC 21821 1 species 1816219 0 1039 0 914 Colwellia sp. MT41 1 species 58049 0 611 1 Thalassotalea 2 2 genus 1518149 609 0 1763536 species 1 Thalassotalea crassostreae 16884 1 0 20 family 267890 Shewanellaceae 25 0 16864 1 Shewanella 24 92 genus 22 2018305 species 1 Shewanella bicestrii 180 0 species 192073 Shewanella denitrificans 1 481 0 1 Shewanella woodyi 60961 species 0 780 173 0 60478 species 1 Shewanella amazonensis 0 1188 Shewanella baltica 1 species 62322 359303 species 1 Shewanella loihica 171 0 Shewanella marisflavi 1 species 260364 0 150 209 0 species 70863 Shewanella oneidensis 1 Shewanella sediminis 1 species 271097 0 537 266 0 70864 species 1 Shewanella pealeana species 404011 Shewanella piezotolerans 1 320 0 568 0 species 56812 Shewanella frigidimarina 1 Shewanella violacea 1 species 60217 0 1139 species 93973 Shewanella japonica 1 809 0 1 Shewanella psychrophila 225848 species 0 915 0 1406 6 196818 no rank species 2059264 Shewanella sp. Pdp11 1 318 0 0 207 1 Shewanella sp. WE21 2029986 species 177 0 species 60480 Shewanella sp. MR-4 1 0 228 Shewanella sp. MR-7 1 species 60481 species 351745 Shewanella sp. W3-18-1 1 240 0 Shewanella sp. ANA-3 1 species 94122 0 236 24 species 1 Shewanella putrefaciens 300 0 7180 0 271098 species 1 Shewanella halifaxensis 0 1 183 Ferrimonadaceae 2 family 2 267892 1 genus 44011 0 181 181 0 species 44012 Ferrimonas balearica 1 0 13479 1 25 Pseudoalteromonadaceae 267888 14 family Pseudoalteromonas 24 genus 251 53246 0 1 13465 500 0 species 247523 Pseudoalteromonas aliena 1 480 0 28109 species 1 Pseudoalteromonas nigrifaciens 504 0 species 394751 Pseudoalteromonas arctica 1 0 284 Pseudoalteromonas rubra 1 species 43658 0 4013 5 no rank 194690 species 234831 Pseudoalteromonas sp. SM9913 1 454 0 2119 0 1514074 species 1 Pseudoalteromonas sp. NC201 401 0 1761891 species 1 Pseudoalteromonas sp. 13-15 516 0 species 283699 Pseudoalteromonas sp. Bsw20308 1 species 1720343 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 523 0 161398 species 1 Pseudoalteromonas phenolica 503 0 43662 species 1 Pseudoalteromonas piscicida 312 0 0 619 Pseudoalteromonas tunicata 1 species 314281 0 401 Pseudoalteromonas espejiana 1 species 28107 508 0 176102 species 1 Pseudoalteromonas agarivorans 0 423 Pseudoalteromonas haloplanktis 1 species 228 Pseudoalteromonas issachenkonii 1 species 152297 0 393 0 440 1 Pseudoalteromonas translucida 166935 species 382 0 43659 species 1 Pseudoalteromonas tetraodonis 0 1063 Pseudoalteromonas spongiae 1 species 298657 1 Pseudoalteromonas atlantica 288 species 0 871 43657 species 1 Pseudoalteromonas luteoviolacea 567 0 0 413 Pseudoalteromonas marina 1 species 267375 1348114 species 1 Pseudoalteromonas piratica 538 0 91347 order 220 243 Enterobacterales 1 86665 0 0 349 2 451511 no rank Plesiomonas 2 genus 4 702 0 1 349 703 species 1 Plesiomonas shigelloides 345 0 0 1 8521 Hafniaceae 14 family 17 1903412 0 1 693 Hafnia 3 genus 12 568 1 2621980 no rank 0 181 0 181 1 Hafnia sp. CBA7124 1848580 species 1 Hafnia alvei 569 species 0 500 genus 44 635 Edwardsiella 8 1 7640 0 0 6134 Edwardsiella tarda 1 species 636 1263550 species 1 Edwardsiella piscicida 179 0 0 339 Edwardsiella anguillarum 1 species 1821960 1 Edwardsiella hoshinae 93378 species 0 104 2676541 no rank 2 570 0 0 287 1 Edwardsiella sp. LADL05-105 1650654 species Edwardsiella sp. EA181011 1 species 1578828 0 283 270 0 species 67780 Edwardsiella ictaluri 1 7 genus 82982 Obesumbacterium 2 171 1 0 1 Obesumbacterium proteus 82983 species 0 164 27 Erwiniaceae 1903409 family 24 0 1 13190 2 genus 2100764 0 374 0 232 1 Pantoea calida 665913 species 0 142 1 Pantoea gaviniae 665914 species 1 2675 0 genus 53 53335 Pantoea 11 Pantoea rwandensis 1 species 1076550 0 130 327 0 species 553 Pantoea ananatis 1 species 66269 Pantoea stewartii 1 212 0 502 0 species 470934 Pantoea vagans 1 303 0 1654067 species group 1 549 species 1 Pantoea agglomerans 303 0 0 176 Pantoea alhagi 1 species 1891675 0 483 3 2630326 no rank Pantoea sp. PSNIH2 1 species 1484157 0 162 1 Pantoea sp. PSNIH1 1484158 species 0 130 species 592316 Pantoea sp. At-9b 1 191 0 Candidatus Pantoea carbekii 1 species 1235990 0 489 0 1 1249 8 Erwinia 551 genus 14 0 136 Erwinia amylovora 1 species 552 1 no rank 2622719 0 120 215689 species 1 Erwinia sp. Ejp617 120 0 0 277 1 Candidatus Erwinia sp. ErCipseudotaxifoliae 1922217 species 1 Erwinia billingiae 182337 species 0 304 120 0 species 338565 Erwinia tasmaniensis 1 122 0 79967 species 1 Erwinia pyrifoliae 0 156 Erwinia gerundensis 1 species 1619313 14 genus 51228 Wigglesworthia 2 1504 1 0 0 1490 Wigglesworthia glossinidia 1 species 51229 32199 genus 12 2 Buchnera 1 7198 0 7186 0 species 9 Buchnera aphidicola 1 1 82986 genus 0 166 Tatumella citrea 1 species 53336 0 166 37 Yersiniaceae 1903411 28 family 0 14067 1 34037 genus 9 4 Rahnella 1 535 0 0 372 2 2635087 no rank species 1805933 Rouxiella sp. ERMR1:05 1 212 0 160 0 species 741091 Rahnella sp. Y9602 1 0 154 Rahnella aquatilis 1 species 34038 164 0 929812 genus 1 929813 species 1 Gibbsiella quercinecans 164 0 1 4697 0 genus 104 613 Serratia 16 Serratia liquefaciens 1 species 614 0 194 Serratia marcescens 1 species 615 0 1484 8 2647522 no rank 0 1592 1 Serratia sp. AS12 768490 species 0 132 555 0 488142 species 1 Serratia sp. SCBI species 768493 Serratia sp. AS13 1 132 0 195 0 1327989 species 1 Serratia sp. FS14 Serratia sp. FGI94 1 species 671990 0 150 151 0 species 104623 Serratia sp. ATCC 39006 1 1 Serratia sp. MYb239 2033438 species 0 138 1 Serratia sp. SSNIH1 1758196 species 0 139 1 Serratia plymuthica 82996 species 0 393 0 497 Serratia fonticola 1 species 47917 169 0 61651 species 1 Serratia ficaria 28151 species 1 Serratia proteamaculans 107 0 Serratia rubidaea 1 species 61652 0 157 1 genus 1745211 Chania 2 131 1 0 species 1639108 Chania multitudinisentens 1 130 0 629 genus 59 13 Yersinia 1 8512 0 630 species 1 Yersinia enterocolitica 1018 0 0 575 Yersinia frederiksenii 1 species 29484 2653513 no rank 1 189 0 species 1839800 Yersinia sp. FDAARGOS_228 1 189 0 Yersinia aldovae 1 species 29483 0 336 0 5201 3 species group 1649845 Yersinia pestis 1 species 632 0 1730 0 840 Yersinia pseudotuberculosis 1 species 633 Yersinia similis 1 species 367190 0 2631 species 631 Yersinia intermedia 1 217 0 29485 species 1 Yersinia rohdei 197 0 species 29486 Yersinia ruckeri 1 318 0 28152 species 1 Yersinia kristensenii 206 0 196 0 species 263819 Yersinia aleksiciae 1 11 family 1903410 Pectobacteriaceae 20 4739 1 0 0 1887 1 Dickeya 6 12 genus 204037 124 0 species 1778540 Dickeya fangzhongdai 1 Dickeya dianthicola 1 species 204039 0 308 1089444 species 1 Dickeya solani 284 0 species 204038 Dickeya dadantii 1 141 0 0 1018 Dickeya zeae 1 species 204042 0 1094 1 5 Sodalis 84565 21 genus 0 218 Sodalis praecaptivus 1 species 1239307 species 63612 Sodalis glossinidius 1 159 0 0 472 Sodalis endosymbiont of Henestaris halophilus 1 species 1929246 1486991 species 1 Candidatus Sodalis pierantonius 224 0 26 genus 122277 Pectobacterium 6 1524 1 0 2042057 species 1 Pectobacterium polaris 179 0 1 Pectobacterium parmentieri 1905730 species 0 507 1 Pectobacterium carotovorum 554 species 0 436 0 168 Pectobacterium atrosepticum 1 species 29471 1 Pectobacterium wasabiae 55208 species 0 208 1 223 0 71655 genus 3 2 Brenneria 1109412 species 1 Brenneria goodwinii 220 0 1903416 family 5 3 Budviciaceae 1 223 0 0 1 218 2 Pragia 82984 genus 3 species 82985 Pragia fontium 1 215 0 Morganellaceae 21 family 17 1903414 0 1 6622 0 1131 1 Photorhabdus 4 6 genus 29487 378 0 species 29488 Photorhabdus luminescens 1 0 514 1 Photorhabdus asymbiotica 291112 species Photorhabdus temperata 1 species 574560 0 233 1485 1 0 626 11 genus 6 Xenorhabdus species 351679 Xenorhabdus hominickii 1 261 0 species 351671 Xenorhabdus doucetiae 1 178 0 0 249 1 Xenorhabdus poinarii 40577 species 0 558 1 Xenorhabdus bovienii 40576 species 228 0 628 species 1 Xenorhabdus nematophila genus 637 1 622 0 Arsenophonus symbiont of Lipoptena fortisetosa 1 species 634113 0 622 Providencia 4 6 genus 586 0 1260 1 0 424 1 Providencia rettgeri 587 species 1 Providencia stuartii 588 species 0 611 0 219 Providencia alcalifaciens 1 species 126385 2 Morganella 581 1 genus 0 223 1 species 582 Morganella morganii 1 222 0 1 1884 0 583 genus 9 3 Proteus 660 0 585 species 1 Proteus vulgaris species 584 Proteus mirabilis 1 1215 0 38734 1 0 543 216 family 118 Enterobacteriaceae 18 191675 no rank 0 5433 0 5433 18 84563 clade 1 clade 199891 0 272 0 272 1 secondary endosymbiont of Trabutina mannipara 1835721 species 301 1 0 1906660 7 genus 2 Candidatus Mikella 0 294 1 Candidatus Mikella endobia 1778264 species 0 2620 7 84564 clade 0 1 2620 7 Candidatus Blochmannia 203804 genus 15 1 Candidatus Blochmannia vafer 251535 species 0 505 251542 species 1 Candidatus Blochmannia chromaiodes 380 0 503 0 species 203907 Candidatus Blochmannia floridanus 1 842 0 no rank 711328 2 345 0 1505596 species 1 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 497 0 species 1505597 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1 Candidatus Blochmannia pennsylvanicus 1 species 101534 0 375 1906657 genus 1 79 0 Candidatus Doolittlea endobia 1 species 1778262 0 79 1 genus 1682492 0 837 1 Candidatus Tachikawaea gelatinosa 1410383 species 0 837 0 275 1 1906661 genus species 1070130 Candidatus Gullanella endobia 1 275 0 0 927 4 146507 clade 1 genus 568987 Candidatus Hamiltonella 2 440 1 0 0 439 1 Candidatus Hamiltonella defensa 138072 species 1 secondary endosymbiont of Heteropsylla cubana 134287 species 0 353 1 secondary endosymbiont of Ctenarytaina eucalypti 1199245 species 0 134 1906659 genus 1 122 0 species 1778263 Candidatus Hoaglandella endobia 1 122 0 1 2588 0 544 genus 71 14 Citrobacter Citrobacter rodentium 1 species 67825 0 111 130 0 species 545 Citrobacter koseri 1 7 species group 1344959 0 1390 105 0 2066049 species 1 Citrobacter freundii complex sp. CFNIH2 103 0 2077148 species 1 Citrobacter freundii complex sp. CFNIH4 species 67827 Citrobacter werkmanii 1 168 0 57706 species 1 Citrobacter braakii 186 0 0 106 Citrobacter freundii complex sp. CFNIH9 1 species 2077149 90 0 species 2077147 Citrobacter freundii complex sp. CFNIH3 1 0 632 Citrobacter freundii 1 species 546 Citrobacter amalonaticus 1 species 35703 0 290 no rank 2644389 2 223 0 0 137 Citrobacter sp. CFNIH10 1 species 1920110 0 86 1 Citrobacter sp. FDAARGOS_156 1702170 species 0 373 1 Citrobacter farmeri 67824 species 0 1 1096 8 Cronobacter 413496 genus 16 species 28141 Cronobacter sakazakii 1 282 0 species 413502 Cronobacter turicensis 1 117 0 535744 species 1 Cronobacter universalis 119 0 0 128 1 Cronobacter muytjensii 413501 species 162 0 1163710 species 1 Cronobacter condimenti species 413497 Cronobacter dublinensis 1 142 0 0 130 Cronobacter malonaticus 1 species 413503 1483 0 36866 no rank 5 0 117 Enterobacteriaceae bacterium ENNIH1 1 species 2066051 Enterobacteriaceae bacterium ENNIH3 1 species 1920128 0 99 0 120 1 Enterobacteriaceae bacterium strain FGI 57 693444 species Plautia stali symbiont 1 species 891974 0 1048 99 0 species 1920109 Enterobacteriaceae bacterium ENNIH2 1 580 1 0 1330547 7 genus 5 Kosakonia 1158459 species 1 Kosakonia sacchari 117 0 0 144 1 Kosakonia oryzae 497725 species 0 114 Kosakonia cowanii 1 species 208223 species 283686 Kosakonia radicincitans 1 198 0 Leclercia 4 genus 8 83654 0 1 402 147 0 83655 species 1 Leclercia adecarboxylata 247 0 2627398 no rank 2 0 107 1 Leclercia sp. LSNIH3 1920116 species 140 0 1920114 species 1 Leclercia sp. LSNIH1 0 633 1 3 Raoultella 160674 7 genus 0 140 1 Raoultella planticola 575 species 486 0 species 54291 Raoultella ornithinolytica 1 0 1 417 2 Cedecea 158483 genus 2 species 158822 Cedecea neteri 1 415 0 1 3462 0 genus 149 547 Enterobacter 22 0 790 9 2608935 no rank Enterobacter sp. E20 1 species 1560339 0 40 95 0 species 2051905 Enterobacter sp. CRENT-193 1 1 Enterobacter sp. SA187 1914861 species 0 111 135 0 1166130 species 1 Enterobacter sp. R4-368 47 0 1977566 species 1 Enterobacter sp. Crenshaw Enterobacter sp. FY-07 1 species 1692238 0 101 Enterobacter sp. HK169 1 species 1868135 0 53 0 118 Enterobacter sp. 638 1 species 399742 species 1827481 Enterobacter sp. ODB01 1 90 0 species group 354276 12 2523 0 2757714 no rank 3 183 0 2077137 species 1 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 60 0 59 0 species 2027919 Enterobacter cloacae complex bacterium 1 64 0 1915310 species 1 Enterobacter cloacae complex sp. ECNIH7 98 0 species 69218 Enterobacter cancerogenus 1 208224 species 1 Enterobacter kobei 87 0 0 267 1 Enterobacter asburiae 61645 species 1082 0 species 550 Enterobacter cloacae 1 species 299767 Enterobacter ludwigii 1 59 0 158836 species 510 3 Enterobacter hormaechei 1 676 0 0 61 1 Enterobacter xiangfangensis 1296536 subspecies 105 0 subspecies 1812934 Enterobacter cloacae complex 'Hoffmann cluster III' 1 0 71 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 1812935 species 1 454 0 1330545 genus 1 4 Lelliottia 0 225 Lelliottia amnigena 1 species 61646 Lelliottia nimipressuralis 1 species 69220 0 113 1 Lelliottia jeotgali 1907578 species 0 115 1330546 genus 1 3 Pluralibacter 1 407 0 1 Pluralibacter gergoviae 61647 species 0 261 1 [Enterobacter] lignolyticus 1334193 species 0 145 1 453 0 401618 genus 2 2 Candidatus Riesia 401619 species 1 Candidatus Riesia pediculicola 451 0 0 139 1 579 genus 61648 species 1 Kluyvera intermedia 139 0 0 115 1 genus 1048757 1048758 species 1 Candidatus Moranella endobia 115 0 9 genus 620 Shigella 4 215 1 0 0 48 1 2629414 no rank 1813821 species 1 Shigella sp. PAMC 28760 48 0 100 0 622 species 1 Shigella dysenteriae 1 Shigella flexneri 623 species 0 58 5088 1 0 590 3 genus 3 Salmonella 54736 species 1 Salmonella bongori 420 0 4665 0 28901 species 1 Salmonella enterica 0 7842 1 10 Klebsiella 570 100 genus species 548 Klebsiella aerogenes 1 1742 0 species 571 Klebsiella oxytoca 1 900 0 0 316 1 Klebsiella variicola 244366 species 0 300 2 2608929 no rank Klebsiella sp. M5al 1 species 1934254 0 154 1905288 species 1 Klebsiella sp. LTGPAF-6F 146 0 3596 0 573 species 1 Klebsiella pneumoniae 206 0 species 1463165 Klebsiella quasipneumoniae 1 0 172 1 Klebsiella quasivariicola 2026240 species 510 0 1134687 species 1 Klebsiella michiganensis 1335483 genus 1 116 0 species 563 Shimwellia blattae 1 116 0 Escherichia 5 genus 15 561 0 1 7015 Escherichia fergusonii 1 species 564 0 80 0 6523 1 Escherichia coli 562 species 106 0 1499973 species 1 Escherichia marmotae 291 0 species 208962 Escherichia albertii 1 409304 genus 4 2 Candidatus Ishikawaella 1 580 0 576 0 168169 species 1 Candidatus Ishikawaella capsulata 72274 159 order 129 Pseudomonadales 53893 1 0 0 32683 1 Pseudomonadaceae 86 190 family 135621 0 1 368 Oblitimonas 2 genus 4 1849530 species 1697053 Oblitimonas alkaliphila 1 364 0 31332 1 0 679 genus 286 Pseudomonas 80 0 4318 6 species group 136841 1 Pseudomonas aeruginosa 287 species 0 2144 species 43263 Pseudomonas alcaligenes 1 235 0 53412 species 1 Pseudomonas resinovorans 243 0 0 886 1 Pseudomonas mendocina 300 species 53408 species 1 Pseudomonas citronellolis 461 0 species subgroup 1232139 1 349 0 Pseudomonas furukawaii 1 species 1149133 0 349 0 132 Pseudomonas entomophila 1 species 312306 1583341 species 1 Pseudomonas cerasi 370 0 487 0 104087 species 1 Pseudomonas frederiksbergensis 0 226 Pseudomonas psychrotolerans 1 species 237610 species 157782 Pseudomonas parafulva 1 331 0 0 4502 6 136845 species group 238 0 47885 species 1 Pseudomonas oryzihabitans 1 Pseudomonas monteilii 76759 species 0 478 Pseudomonas mosselii 1 species 78327 0 712 123 0 species 70775 Pseudomonas plecoglossicida 1 species 47880 Pseudomonas fulva 1 256 0 2695 0 303 species 1 Pseudomonas putida species 157783 Pseudomonas cremoricolorata 1 158 0 2 136846 species group 0 1733 0 1525 1 species subgroup 578833 0 1525 Pseudomonas stutzeri 1 species 316 Pseudomonas balearica 1 species 74829 0 208 481 0 1853130 species 1 Pseudomonas silesiensis 5454 0 136843 species group 9 1 Pseudomonas protegens 380021 species 0 290 0 3174 Pseudomonas fluorescens 1 species 294 species 76758 Pseudomonas orientalis 1 105 0 Pseudomonas azotoformans 1 species 47878 0 640 76761 species 1 Pseudomonas veronii 143 0 0 695 Pseudomonas trivialis 1 species 200450 0 120 1 Pseudomonas poae 200451 species 75612 species 1 Pseudomonas mandelii 155 0 47879 species 1 Pseudomonas corrugata 132 0 157 0 216142 species 1 Pseudomonas rhizosphaerae 2 species group 136842 0 1426 296 species 1 Pseudomonas fragi 324 0 0 1102 1 Pseudomonas chlororaphis 587753 species 0 145 1 Pseudomonas antarctica 219572 species species 65741 Pseudomonas knackmussii 1 214 0 3196 0 136849 species group 8 2 species subgroup 251698 0 548 29438 species 1 Pseudomonas savastanoi 322 0 species 47877 Pseudomonas amygdali 1 226 0 484 0 251701 species 1 Pseudomonas syringae group genomosp. 3 0 1499 1 species subgroup 251695 species 317 Pseudomonas syringae 1 1499 0 144 0 species 36746 Pseudomonas cichorii 1 0 225 1 no rank 2775504 Pseudomonas sp. Lz4W 1 species 1206777 0 225 0 146 1 Pseudomonas viridiflava 33069 species 150 0 species 46257 Pseudomonas avellanae 1 5841 0 196821 no rank 30 0 235 1 Pseudomonas sp. NC02 2067572 species 201 0 1659194 species 1 Pseudomonas sp. GR 6-02 117 0 species 2018067 Pseudomonas sp. FDAARGOS_380 1 species 1500686 Pseudomonas sp. Os17 1 186 0 species 2083053 Pseudomonas sp. SWI44 1 129 0 0 164 Pseudomonas sp. SWI36 1 species 2083052 0 427 1 Pseudomonas sp. TKP 1415630 species 0 136 Pseudomonas sp. FGI182 1 species 1259844 147 0 species 2083055 Pseudomonas sp. LH1G9 1 174 0 1500687 species 1 Pseudomonas sp. St29 173 0 species 2069256 Pseudomonas sp. XWY-1 1 0 171 Pseudomonas sp. LPH1 1 species 1898684 Pseudomonas sp. MRSN12121 1 species 1611770 0 191 0 183 Pseudomonas sp. CCOS 191 1 species 1649877 species 1283291 Pseudomonas sp. URMO17WK12:I11 1 365 0 0 165 1 Pseudomonas sp. TCU-HL1 1856685 species Pseudomonas sp. LG1D9 1 species 2083054 0 164 Pseudomonas sp. ATCC 13867 1 species 1294143 0 235 Pseudomonas sp. PONIH3 1 species 1636610 0 183 1931241 species 1 Pseudomonas sp. S-6-2 267 0 species 2083051 Pseudomonas sp. SWI6 1 159 0 1827300 species 1 Pseudomonas sp. MYb193 118 0 2049589 species 1 Pseudomonas sp. HLS-6 138 0 1534110 species 1 Pseudomonas sp. DR 5-09 159 0 Pseudomonas sp. CC6-YY-74 1 species 1930532 0 402 1 Pseudomonas sp. VLB120 69328 species 0 137 163 0 species 1338689 Pseudomonas sp. JY-Q 1 species 1981174 Pseudomonas sp. M30-35 1 206 0 0 205 Pseudomonas sp. StFLB209 1 species 1028989 species 1207075 Pseudomonas sp. UW4 1 141 0 1 Pseudomonas versuta 1788301 species 0 192 1 Pseudomonas alcaliphila 101564 species 0 205 1 Pseudomonas alkylphenolica 237609 species 0 137 0 115 Pseudomonas lurida 1 species 244566 0 421 1 Pseudomonas koreensis 198620 species 412 0 species 930166 Pseudomonas brassicacearum 1 351 subfamily 3 793 0 genus 3 352 Azotobacter 3 1 793 0 species 353 Azotobacter chroococcum 1 528 0 Azotobacter vinelandii 1 species 354 0 262 42 Moraxellaceae 468 family 49 0 1 21051 Psychrobacter 11 79 genus 497 0 3904 1 2287 0 196806 no rank 6 280 0 species 1720344 Psychrobacter sp. AntiMn-1 1 1699624 species 1 Psychrobacter sp. P11G5 342 0 312 0 species 571800 Psychrobacter sp. G 1 1 Psychrobacter sp. P2G3 1699622 species 0 345 0 394 Psychrobacter sp. DAB_AL43B 1 species 1028416 614 0 species 349106 Psychrobacter sp. PRwf-1 1 Psychrobacter urativorans 1 species 45610 0 425 species 330922 Psychrobacter cryohalolentis 1 300 0 301 0 334543 species 1 Psychrobacter arcticus species 261164 Psychrobacter alimentarius 1 512 0 1814 1 0 19 genus 475 Moraxella 5 195 0 species 29433 Moraxella ovis 1 544 0 species 480 Moraxella catarrhalis 1 310 0 species 386891 Moraxella bovoculi 1 species 34062 Moraxella osloensis 1 746 0 15284 1 0 469 182 genus 25 Acinetobacter species 1148157 Acinetobacter oleivorans 1 571 0 1 Acinetobacter soli 487316 species 0 376 207 0 756892 species 1 Acinetobacter indicus 1789224 species 1 Acinetobacter larvae 355 0 0 625 Acinetobacter junii 1 species 40215 308 0 40216 species 1 Acinetobacter radioresistens 1324350 species 1 Acinetobacter equi 758 0 499 0 29430 species 1 Acinetobacter haemolyticus 303 0 40214 species 1 Acinetobacter johnsonii 570 0 106648 species 1 Acinetobacter bereziniae 0 410 Acinetobacter schindleri 1 species 108981 7171 0 species group 909768 5 1 Acinetobacter baumannii 470 species 0 2512 Acinetobacter calcoaceticus 1 species 471 0 897 529 0 1785128 species 1 Acinetobacter lactucae 854 0 species 106654 Acinetobacter nosocomialis 1 0 2379 Acinetobacter pittii 1 species 48296 0 437 1 202950 species 0 437 Acinetobacter sp. ADP1 1 strain 62977 2512 0 196816 no rank 7 Acinetobacter sp. LoGeW2-3 1 species 1808001 0 223 0 327 Acinetobacter sp. SWBY1 1 species 2079596 0 318 1 Acinetobacter sp. NCu2D-2 1608473 species Acinetobacter sp. TGL-Y2 1 species 1407071 0 445 0 487 1 Acinetobacter sp. ACNIH1 1636603 species species 1646498 Acinetobacter sp. TTH0-4 1 357 0 355 0 species 1758189 Acinetobacter sp. ACNIH2 1 order 19 1706369 Cellvibrionales 29 1 6604 0 7 Spongiibacteraceae 1706375 family 31 0 1 1512 2 Spongiibacter 630749 genus 5 0 1 380 375 0 no rank 2631504 1 375 0 1620392 species 1 Spongiibacter sp. IMCC21906 Zhongshania 2 8 genus 1434050 0 366 1 1 Zhongshania aliphaticivorans 1470434 species 0 358 1 735 0 genus 1 1084558 Oceanicoccus 2 species 716816 Oceanicoccus sagamiensis 1 734 0 2764 1 0 1706371 19 family 12 Cellvibrionaceae 0 1 407 2 Teredinibacter 2425 genus 4 0 403 Teredinibacter turnerae 1 species 2426 genus 5 10 Cellvibrio 4 1 996 0 338 0 species 155077 Cellvibrio japonicus 1 no rank 2624793 2 653 0 species 1945512 Cellvibrio sp. PSBB023 1 313 0 340 0 species 1987723 Cellvibrio sp. PSBB006 1 0 441 1 Saccharophagus 2 2 genus 316625 0 439 1 Saccharophagus degradans 86304 species 0 654 1 2036021 genus 0 654 1 Agarilytica rhodophyticola 1737490 species 0 247 1 Simiduia 2 2 genus 447467 0 245 Simiduia agarivorans 1 species 447471 0 1 1113 5 Microbulbiferaceae 1706373 family 6 1 1107 0 genus 38 48073 Microbulbifer 4 0 353 1 Microbulbifer agarilyticus 260552 species species 252514 Microbulbifer thermotolerans 1 391 0 1 Microbulbifer aggregans 1769779 species 0 325 1196 1 0 9 family 1706372 Halieaceae 4 genus 29 1217416 Halioglobus 3 1 1187 0 Halioglobus pacificus 1 species 930806 0 645 930805 species 1 Halioglobus japonicus 513 0 1 2321 0 order 13 135618 Methylococcales 12 2308 1 0 18 family 403 Methylococcaceae 11 Methylococcus 2 genus 3 413 0 1 143 140 0 species 414 Methylococcus capsulatus 1 Methylomonas 5 44 genus 416 0 1432 1 0 591 Methylomonas denitrificans 1 species 1538553 0 273 1 Methylomonas methanica 421 species 1 2608980 no rank 0 271 Methylomonas sp. DH-1 1 species 1727196 0 271 253 0 702114 species 1 Methylomonas koyamae 1 762296 genus 0 223 species 1704499 Methylovulum psychrotolerans 1 223 0 39773 genus 3 2 Methylomicrobium 1 492 0 Methylomicrobium alcaliphilum 1 species 271065 0 489 Aeromonadales 28 28 order 135624 0 6533 1 1 6505 0 family 34 84642 Aeromonadaceae 27 1 191 0 43947 genus 1 2 Tolumonas 43948 species 1 Tolumonas auensis 190 0 347533 genus 5 2 Zobellella 1 272 0 1 Zobellella denitrificans 347534 species 0 267 0 243 1 genus 129577 243 0 no rank 2636315 1 0 243 1 Oceanimonas sp. GK1 511062 species 505 1 0 225143 5 genus 3 Oceanisphaera 0 241 1 Oceanisphaera profunda 1416627 species 259 0 species 1903694 Oceanisphaera sp. AMac2203 1 1 5260 0 genus 180 642 Aeromonas 18 0 175 1 Aeromonas dhakensis 196024 species 1606 0 no rank 257493 8 species 1758179 Aeromonas sp. ASNIH5 1 188 0 Aeromonas sp. ASNIH2 1 species 1636607 0 135 2033032 species 1 Aeromonas sp. CA23 305 0 141 0 species 2033033 Aeromonas sp. CU5 1 105 0 1920107 species 1 Aeromonas sp. ASNIH7 1 Aeromonas sp. ASNIH4 1636609 species 0 227 377 0 1636606 species 1 Aeromonas sp. ASNIH1 0 128 Aeromonas sp. ASNIH3 1 species 1636608 948519 species 1 Aeromonas rivipollensis 160 0 Aeromonas caviae 1 species 648 0 108 species 651 Aeromonas media 1 176 0 0 234 1 Aeromonas aquatica 558964 species 645 species 1 Aeromonas salmonicida 751 0 652 species 1 Aeromonas schubertii 155 0 1 Aeromonas hydrophila 644 species 0 1199 0 516 Aeromonas veronii 1 species 654 4 Immundisolibacterales 1934945 4 order 0 312 1 1 308 0 1934946 family 2 3 Immundisolibacteraceae 0 306 1 2 Immundisolibacter 1934947 3 genus 0 303 Immundisolibacter cernigliae 1 species 1810504 0 1 10535 Legionellales 21 order 10 118969 0 9111 1 15 Legionellaceae 444 12 family 2 Tatlockia 465 genus 1 0 1 489 0 488 1 Tatlockia micdadei 451 species 1 8610 0 genus 55 445 Legionella 12 species 446 Legionella pneumophila 1 2763 0 1 Legionella clemsonensis 1867846 species 0 532 Legionella sainthelensi 1 species 28087 0 753 species 449 Legionella hackeliae 1 533 0 694 0 96230 species 1 Legionella fallonii 1 Legionella oakridgensis 29423 species 0 492 species 66969 Legionella waltersii 1 551 0 0 738 1 Legionella longbeachae 450 species 1 Legionella lansingensis 45067 species 0 389 867 0 2005262 species 1 Legionella endosymbiont of Polyplax serrata 243 0 species 452 Legionella spiritensis 1 0 1 1414 5 Coxiellaceae 118968 family 16 1 no rank 134284 0 519 species 1592897 Coxiella-like endosymbiont 1 519 0 Coxiella 3 5 genus 776 0 879 1 1 Coxiella burnetii 777 species 0 497 0 377 1 no rank 2676648 377 0 species 325775 Coxiella endosymbiont of Amblyomma americanum 1 order 24 135623 Vibrionales 43 1 34598 0 0 34574 1 Vibrionaceae 42 77 family 641 2042066 4 genus 2 Paraphotobacterium 1563 1 0 Paraphotobacterium marinum 1 species 1755811 0 1559 10601 1 0 657 8 genus 4 Photobacterium 212 0 species 1295392 Photobacterium gaetbulicola 1 Photobacterium profundum 1 species 74109 0 605 9776 0 38293 species 1 Photobacterium damselae 0 223 1 246861 genus 0 223 1 Grimontia hollisae 673 species 1 2144 0 genus 6 511678 Aliivibrio 4 species 40269 Aliivibrio salmonicida 1 421 0 1016 0 species 80852 Aliivibrio wodanis 1 0 701 1 Aliivibrio fischeri 668 species Vibrio 30 234 genus 662 0 19966 1 Vibrio mimicus 1 species 674 0 406 0 1481 1 Vibrio vulnificus 672 species 0 1173 1 Vibrio scophthalmi 45658 species species group 1891919 1 581 0 581 0 species 29498 Vibrio tubiashii 1 0 484 1 Vibrio gazogenes 687 species 1 Vibrio qinghaiensis 2025808 species 0 286 0 395 Vibrio tritonius 1 species 1435069 0 9186 10 717610 species group 691 species 1 Vibrio natriegens 653 0 0 803 1 Vibrio harveyi 669 species 738 0 species subgroup 2315253 2 0 519 Vibrio diabolicus 1 species 50719 1 Vibrio antiquarius 150340 species 0 219 0 267 Vibrio rotiferianus 1 species 190895 0 3481 1 Vibrio campbellii 680 species species 766224 Vibrio jasicida 1 276 0 1 Vibrio parahaemolyticus 670 species 0 1309 species 696485 Vibrio owensii 1 500 0 species 663 Vibrio alginolyticus 1 1159 0 Vibrio coralliilyticus 1 species 190893 0 1080 553239 species 1 Vibrio breoganii 318 0 species 55601 Vibrio anguillarum 1 686 0 318 0 species 28173 Vibrio nigripulchritudo 1 781 0 species 52443 Vibrio tapetis 1 1534743 species 1 Vibrio hyugaensis 380 0 0 614 Vibrio tasmaniensis 1 species 212663 470 0 29494 species 1 Vibrio furnissii 0 215 Vibrio fluvialis 1 species 676 1 Vibrio cholerae 666 species 0 433 0 445 2 no rank 2614977 138 0 species 2014742 Vibrio sp. 2521-89 1 307 0 species 1116375 Vibrio sp. EJY3 1 219 1 0 135615 1 order 3 Cardiobacteriales 0 218 1 2 Cardiobacteriaceae 868 6 family 869 genus 1 212 0 species 870 Dichelobacter nodosus 1 212 0 5654 0 118884 no rank 14 genus 23 655184 Candidatus Thioglobus 3 1 1765 0 548 0 1705394 species 1 Candidatus Thioglobus autotrophicus 1194 0 1427364 species 1 Candidatus Thioglobus singularis 349742 2 genus 2 Sedimenticola 275 1 0 0 273 Sedimenticola thiotaurini 1 species 1543721 198346 clade 1 1031 0 0 1031 Candidatus Baumannia cicadellinicola 1 species 186490 Pseudohongiella 2 1 genus 1524249 0 371 1 species 1249552 Pseudohongiella spirulinae 1 370 0 4 32036 clade 0 1994 species 410330 Calyptogena okutanii thioautotrophic gill symbiont 1 868 0 1541743 3 genus 2 Candidatus Ruthia 627 1 0 Candidatus Ruthia magnifica 1 species 386487 0 624 1 Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 species 0 499 2 Thiolapillus 1608298 2 genus 0 218 1 1 Thiolapillus brandeum 1076588 species 0 216 1 15523 0 135619 order 59 70 Oceanospirillales Oleiphilaceae 3 21 family 191033 0 514 1 0 1 493 2 Oleiphilus 141450 genus 5 species 141451 Oleiphilus messinensis 1 488 0 1354 1 0 5 family 1920240 Kangiellaceae 6 1 1349 0 261963 genus 40 5 Kangiella 0 336 Kangiella koreensis 1 species 261964 0 306 Kangiella geojedonensis 1 species 914150 1 Kangiella sediminilitoris 1144748 species 0 303 364 0 1561924 species 1 Kangiella profundi 0 6956 1 Halomonadaceae 31 31 family 28256 0 1 3692 15 Halomonas 2745 genus 87 Halomonas aestuarii 1 species 1897729 0 261 2609666 no rank 8 1924 0 0 228 1 Halomonas sp. 'Soap Lake #6' 1949203 species 0 240 Halomonas sp. KO116 1 species 1504981 0 230 Halomonas sp. 'Soap Lake #7' 1 species 1962264 species 1971364 Halomonas sp. GT 1 235 0 192 0 1118153 species 1 Halomonas sp. GFAJ-1 species 2136172 Halomonas sp. SF2003 1 270 0 0 258 1 Halomonas sp. R57-5 1610576 species 1 Halomonas sp. 1513 1883416 species 0 271 0 391 Halomonas huangheensis 1 species 1178482 Halomonas beimenensis 1 species 475662 0 441 0 213 1 Halomonas campaniensis 213554 species 0 195 Halomonas hydrothermalis 1 species 115561 1 Halomonas chromatireducens 507626 species 0 180 0 1645 5 114403 no rank 235572 8 genus 2 Candidatus Portiera 924 1 0 0 916 Candidatus Portiera aleyrodidarum 1 species 91844 1 239 0 genus 1 114185 Candidatus Carsonella 2 1 Candidatus Carsonella ruddii 114186 species 0 238 1495768 genus 1 482 0 0 482 Candidatus Evansia muelleri 1 species 1495769 501 1 0 504090 12 genus 3 Kushneria 290 0 698828 species 1 Kushneria konosiri 157779 species 1 Kushneria marisflavi 199 0 0 1 321 2 Salinicola 404432 genus 6 1771309 species 1 Salinicola tamaricis 315 0 Halotalea 2 3 genus 376488 0 227 1 Halotalea alkalilenta 1 species 376489 0 224 0 212 1 genus 42054 212 0 158080 species 1 Chromohalobacter salexigens 2 Cobetia 204286 genus 2 0 1 327 Cobetia marina 1 species 28258 0 325 306 1 0 224379 4 family 3 Hahellaceae 0 302 1 2 Hahella 158481 5 genus 1 Hahella chejuensis 158327 species 0 297 12 Oceanospirillaceae 135620 18 family 0 3390 1 1 1346 0 28253 genus 4 4 Marinomonas species 936476 Marinomonas posidonica 1 342 0 1 196814 no rank 0 560 1 Marinomonas sp. MWYL1 400668 species 0 560 119864 species 1 Marinomonas mediterranea 440 0 genus 187492 1 471 0 471 0 187493 species 1 Thalassolituus oleivorans Marinobacterium 2 3 genus 48075 0 585 1 0 582 1 Marinobacterium aestuarii 1821621 species 188907 genus 5 2 Oleispira 1 452 0 188908 species 1 Oleispira antarctica 447 0 0 1 518 Bacterioplanes 2 genus 4 1537406 1249553 species 1 Bacterioplanes sanyensis 514 0 224372 family 16 9 Alcanivoracaceae 1 1968 0 59753 49 genus 6 Alcanivorax 1537 1 0 no rank 2638842 1 236 0 1113728 species 1 Alcanivorax sp. NBRC 101098 236 0 285091 species 1 Alcanivorax dieselolei 326 0 59754 species 1 Alcanivorax borkumensis 293 0 species 1094342 Alcanivorax xenomutans 1 310 0 1 Alcanivorax pacificus 1306787 species 0 323 genus 8 2025617 Ketobacter 2 1 415 0 1 Ketobacter alkanivorans 1917421 species 0 407 0 976 1 5 Saccharospirillaceae 255527 6 family 0 1 433 Gynuella 2 genus 3 1445504 430 0 1445505 species 1 Gynuella sunshinyii 2 Reinekea 230494 genus 2 0 1 537 species 1336806 Reinekea forsetii 1 535 0 6 class 1807140 0 957 order 15 225057 Acidithiobacillales 6 1 957 0 Acidithiobacillaceae 5 family 17 225058 0 1 942 925 1 0 17 genus 119977 Acidithiobacillus 4 0 204 Acidithiobacillus ferrooxidans 1 species 920 431 0 160808 species 1 Acidithiobacillus ferrivorans 273 0 33059 species 1 Acidithiobacillus caldus Alphaproteobacteria 562 222 class 28211 0 278573 1 8 no rank 82117 0 3245 380 1 0 17 genus 991903 Polymorphum 2 0 363 1 Polymorphum gilvum 991904 species 0 419 1 2 Phreatobacter 1632780 13 genus 1 Phreatobacter sp. S-12 1868589 species 0 406 1 272 0 genus 3 213485 Micavibrio 2 269 0 species 349221 Micavibrio aeruginosavorus 1 0 2174 2 62654 clade 1 2174 0 767891 genus 16 2 Candidatus Puniceispirillum 2158 0 767892 species 1 Candidatus Puniceispirillum marinum 383 0 order 2800059 2 2800061 family 2 383 0 74317 genus 6 2 Maricaulis 1 383 0 74318 species 1 Maricaulis maris 377 0 1 21611 0 766 order 16 55 Rickettsiales 2 1328881 family 0 652 652 1 0 8 genus 411566 Candidatus Midichloria 2 644 0 species 234827 Candidatus Midichloria mitochondrii 1 1699067 no rank 1 1417 0 0 1417 1 Rickettsiales bacterium Ac37b 1528098 species family 8 775 Rickettsiaceae 28 1 8804 0 25 33988 tribe 0 8200 1 1285 0 69474 genus 5 2 Orientia species 784 Orientia tsutsugamushi 1 1280 0 23 Rickettsia 780 648 genus 0 6915 1 species group 1129742 2 1392 0 887 0 33990 species 1 Rickettsia bellii 1 Rickettsia canadensis 788 species 0 505 0 1616 2 species group 114292 Rickettsia typhi 1 species 785 0 799 782 species 1 Rickettsia prowazekii 817 0 0 2494 17 114277 species group 0 23 Rickettsia slovaca 1 species 35794 49 0 781 species 1 Rickettsia conorii 454 0 species 787 Rickettsia australis 1 143 0 33989 species 1 Rickettsia amblyommatis 61 0 226665 species 1 Rickettsia heilongjiangensis 0 404 Rickettsia felis 1 species 42862 Rickettsia philipii 1 species 1105106 0 42 1 Rickettsia akari 786 species 0 319 41 0 species 35788 Rickettsia africae 1 0 77 Rickettsia massiliae 1 species 35791 0 305 1 Rickettsia monacensis 109232 species Rickettsia peacockii 1 species 47589 0 204 1 Rickettsia rhipicephali 33992 species 0 129 species 783 Rickettsia rickettsii 1 67 0 67 0 35790 species 1 Rickettsia japonica 0 41 Rickettsia parkeri 1 species 35792 1 Rickettsia montanensis 33991 species 0 68 765 0 no rank 114295 1 0 765 1 Rickettsia endosymbiont of Bemisia tabaci 337479 species 0 596 1 2 Candidatus Phycorickettsia 2115980 2 genus 2115978 species 1 Candidatus Phycorickettsia trachydisci 594 0 0 10722 1 23 Anaplasmataceae 942 19 family 8 tribe 952 0 4748 953 genus 97 8 Wolbachia 1 4748 0 7 no rank 2640676 0 4651 0 512 Wolbachia endosymbiont of Onchocerca ochengi 1 species 100901 species 246273 Wolbachia endosymbiont of Cimex lectularius 1 439 0 66084 species 1 Wolbachia sp. wRi 603 0 1 Wolbachia endosymbiont of Onchocerca volvulus 77551 species 0 498 0 598 Wolbachia endosymbiont of Drosophila melanogaster 1 species 163164 77038 species 1 Wolbachia endosymbiont of Drosophila simulans 1275 0 726 0 80849 species 1 Wolbachia endosymbiont of Brugia malayi 943 27 genus 6 Ehrlichia 4644 1 0 no rank 106181 1 792 0 391036 species 1 Ehrlichia sp. HF 792 0 4 species group 106178 0 3825 1 Ehrlichia ruminantium 779 species 0 1093 Ehrlichia canis 1 species 944 0 1033 945 species 1 Ehrlichia chaffeensis 881 0 species 35795 Ehrlichia muris 1 818 0 12 genus 33993 Neorickettsia 4 761 1 0 0 230 1 Neorickettsia helminthoeca 33994 species 950 species 1 Neorickettsia risticii 273 0 951 species 1 Neorickettsia sennetsu 246 0 Anaplasma 4 4 genus 768 0 550 1 1 106179 species group 0 248 248 0 948 species 1 Anaplasma phagocytophilum 1 Anaplasma marginale 770 species 0 162 1 Anaplasma centrale 769 species 0 136 1 19433 0 order 73 204457 Sphingomonadales 82 Sphingomonadaceae 59 family 176 41297 0 1 15360 0 1 2851 15 Sphingobium 165695 genus 93 179 0 332055 species 1 Sphingobium indicum 1 Sphingobium japonicum 332056 species 0 208 149 0 species 1332080 Sphingobium baderi 1 0 176 Sphingobium cloacae 1 species 120107 13690 species 1 Sphingobium yanoikuyae 382 0 0 1170 6 no rank 2611147 1843368 species 1 Sphingobium sp. RAC03 204 0 1855519 species 1 Sphingobium sp. EP60837 142 0 0 216 Sphingobium sp. TKS 1 species 1315974 Sphingobium sp. MI1205 1 species 407020 0 196 species 484429 Sphingobium sp. YBL2 1 171 0 627192 species 1 Sphingobium sp. SYK-6 241 0 132 0 species 76947 Sphingobium herbicidovorans 1 162 0 species 1673076 Sphingobium hydrophobicum 1 46429 species 1 Sphingobium chlorophenolicum 200 0 2388 1 0 59 genus 165697 Sphingopyxis 10 Sphingopyxis terrae 1 species 33052 0 210 1 Sphingopyxis granuli 267128 species 0 226 1096 0 no rank 2614943 4 1357916 species 1 Sphingopyxis sp. QXT-31 246 0 0 203 Sphingopyxis sp. MG 1 species 1866325 201 0 292913 species 1 Sphingopyxis sp. 113P3 446 0 1913578 species 1 Sphingopyxis sp. LPB0140 1 Sphingopyxis fribergensis 1515612 species 0 183 Sphingopyxis alaskensis 1 species 117207 0 217 397 0 33050 species 1 Sphingopyxis macrogoltabida 608 1 0 18 genus 1434046 Sphingorhabdus 3 2 no rank 2614947 0 590 305 0 2077182 species 1 Sphingorhabdus sp. YGSMI21 285 0 1806885 species 1 Sphingorhabdus sp. M41 1 2685927 genus 0 211 0 211 Sphingomonas sp. JJ-A5 1 species 1921510 6370 1 0 99 genus 13687 Sphingomonas 15 231 0 species 93064 Sphingomonas koreensis 1 241 0 species 1549858 Sphingomonas taxi 1 0 223 1 Sphingomonas hengshuiensis 1609977 species 0 388 1 Sphingomonas sanxanigenens 397260 species 2 Sphingomonas wittichii 160791 386 species 0 797 1 0 411 1 Sphingomonas sp. DC-6 1283312 strain 223 0 species 152682 Sphingomonas melonis 1 250 0 species 1560345 Sphingomonas panacis 1 3918 0 196159 no rank 6 species 1327635 Sphingomonas sp. Cra20 1 225 0 1938607 species 1 Sphingomonas sp. LM7 217 0 217 0 745310 species 1 Sphingomonas sp. MM-1 Sphingomonas sp. KC8 1 species 1030157 0 199 1390395 species 1 Sphingomonas sp. LK11 2865 0 0 195 Sphingomonas sp. NIC1 1 species 1961362 0 307 1 Blastomonas 2 4 genus 150203 1 no rank 2626550 0 303 Blastomonas sp. RAC04 1 species 1842535 0 303 Zymomonas 2 1 genus 541 0 658 1 Zymomonas mobilis 1 species 542 0 657 5 Novosphingobium 165696 32 genus 0 1053 1 Novosphingobium resinovorum 1 species 158500 0 279 191 0 species 48935 Novosphingobium aromaticivorans 1 1 Novosphingobium pentaromativorans 205844 species 0 280 271 0 no rank 2644732 1 271 0 702113 species 1 Novosphingobium sp. PP1Y 2 Citromicrobium 72173 7 genus 0 195 1 1 2630544 no rank 0 188 1634516 species 1 Citromicrobium sp. JL477 188 0 0 284 1 Rhizorhabdus 2 2 genus 1649486 0 282 1 Rhizorhabdus dicambivorans 1850238 species genus 2709685 1 259 0 species 266812 Sphingorhabdus flavimaris 1 259 0 4000 1 0 75 family 335929 Erythrobacteraceae 22 2800681 genus 2 774 0 species 502682 Erythrobacter gangjinensis 1 328 0 446 0 1648404 species 1 Erythrobacter atlanticus 2 genus 2800686 0 334 692370 species 1 Altererythrobacter dongtanensis 181 0 1982042 species 1 Altererythrobacter mangrovi 153 0 3 Croceicoccus 1295327 genus 14 0 1 392 0 230 Croceicoccus marinus 1 species 450378 0 148 Croceicoccus naphthovorans 1 species 1348774 568 1 0 82 genus 361177 Altererythrobacter 4 1 Altererythrobacter ishigakiensis 476157 species 0 178 149 0 1267766 species 1 Altererythrobacter atlanticus 361183 species 1 Altererythrobacter epoxidivorans 159 0 0 276 2 1855416 genus 0 139 Erythrobacter flavus 1 species 192812 Erythrobacter seohaensis 1 species 266951 0 137 6 2800788 no rank 0 1209 61 genus 1041 Erythrobacter 3 684 1 0 Porphyrobacter neustonensis 1 species 1112 0 182 0 441 1 Erythrobacter litoralis 39960 species Porphyrobacter 3 30 genus 1111 0 525 1 495 0 2683265 no rank 2 1 Porphyrobacter HT-58-2 2023229 species 0 210 1 Porphyrobacter sp. LM 6 1896196 species 0 285 131 0 2800685 genus 1 Altererythrobacter marensis 1 species 543877 0 131 1 genus 2800682 0 241 0 241 1 Altererythrobacter namhicola 645517 species 356 order 321 209 Rhizobiales 1 61397 0 Rhizobiaceae 55 77 family 82115 0 16264 1 0 386 1 Shinella 2 1 genus 323620 1 no rank 2643062 0 385 385 0 species 879274 Shinella sp. HZN7 1 10 227292 no rank 0 3276 0 511 1 3 Ensifer 106591 3 genus 235 0 species 716925 Ensifer sojae 1 106592 species 1 Ensifer adhaerens 273 0 0 2765 1 7 Sinorhizobium 28105 41 genus 0 601 2 no rank 2613772 1842534 species 1 Sinorhizobium sp. RAC02 307 0 Sinorhizobium sp. CCBAU 05631 1 species 794846 0 294 1 Sinorhizobium medicae 110321 species 0 279 296 0 194963 species 1 Sinorhizobium americanum species 382 Sinorhizobium meliloti 1 727 0 1 species group 663276 0 821 1 Sinorhizobium fredii 380 species 0 821 36 227290 no rank 0 9162 381 genus 379 Rhizobium 27 6232 1 0 0 2411 21 2613769 no rank 424182 species 1 Rhizobium sp. IRBG74 168 0 1 Rhizobium sp. N621 1703964 species 0 1 0 154 Rhizobium sp. NXC14 1 species 1981173 1 Rhizobium sp. Kim5 2020311 species 0 190 1703968 species 1 Rhizobium sp. N871 2 0 1 Rhizobium sp. 10195 2028343 species 0 220 0 188 1 Rhizobium sp. NT-26 1125847 species 1 Rhizobium sp. N113 1703960 species 0 1 1 Rhizobium sp. IE4771 1301032 species 0 206 1 Rhizobium sp. ACO-34A 1571470 species 0 207 0 4 Rhizobium sp. N741 1 species 1703967 174 0 2020312 species 1 Rhizobium sp. CIAT894 1 Rhizobium sp. N324 1703969 species 0 224 0 1 Rhizobium sp. N1341 1 species 1703962 Rhizobium sp. TAL182 1 species 2020313 0 62 1 Rhizobium sp. NXC24 2048897 species 0 205 168 0 1869170 species 1 Rhizobium sp. S41 53 0 species 1703961 Rhizobium sp. N1314 1 53 0 species 1703966 Rhizobium sp. N731 1 Rhizobium sp. N6212 1 species 1703965 0 1 0 129 1 Rhizobium sp. Y9 1914541 species Rhizobium etli 1 species 29449 0 740 584 0 396 species 1 Rhizobium phaseoli 1526 0 species 384 Rhizobium leguminosarum 1 1 Rhizobium gallicum 56730 species 0 390 1 Rhizobium tropici 398 species 0 200 405 1 0 2 genus 1525371 Neorhizobium 2 399 species 1 Neorhizobium galegae 403 0 0 2525 1 7 Agrobacterium 357 39 genus 229 0 373 species 1 Agrobacterium vitis 359 species 1 Agrobacterium rhizogenes 177 0 0 1502 2 species group 1183400 Agrobacterium tumefaciens 1 species 358 0 1318 184 0 species 1176649 Agrobacterium fabrum 1 0 578 2 no rank 2632611 1 Agrobacterium sp. H13-3 861208 species 0 173 1842536 species 1 Agrobacterium sp. RAC06 405 0 34019 29 genus 6 Liberibacter 3363 1 0 613 0 species 34020 Candidatus Liberibacter africanus 1 483 0 species 34021 Candidatus Liberibacter asiaticus 1 826 0 1273132 species 1 Liberibacter crescens species 556287 Candidatus Liberibacter solanacearum 1 608 0 0 804 Candidatus Liberibacter americanus 1 species 309868 1198 1 0 3 family 255475 Aurantimonadaceae 7 1 887 0 genus 35 293088 Martelella 4 1 Martelella endophytica 1486262 species 0 218 0 308 1 Martelella mediterranea 293089 species 2629616 no rank 1 326 0 1 Martelella sp. AD-3 686597 species 0 326 7 genus 414371 Aureimonas 2 308 1 0 no rank 2615206 1 301 0 0 301 1 Aureimonas sp. AU20 1349819 species 0 5319 1 Methylobacteriaceae 15 11 family 119045 2137 0 genus 2282523 3 1 Methylobacterium zatmanii 29429 species 0 227 1 Methylobacterium populi 223967 species 0 552 species 408 Methylobacterium extorquens 1 1358 0 0 1 2855 9 Methylobacterium 407 genus 107 418223 species 1 Methylobacterium phyllosphaerae 277 0 0 277 Methylobacterium oryzae 1 species 334852 1016 0 2615210 no rank 3 Methylobacterium sp. 4-46 1 species 426117 0 487 266 0 species 1479019 Methylobacterium sp. C1 1 0 263 Methylobacterium sp. AMS5 1 species 925818 species 31998 Methylobacterium radiotolerans 1 336 0 413 0 species 114616 Methylobacterium nodulans 1 270351 species 1 Methylobacterium aquaticum 429 0 10 genus 186650 Microvirga 2 316 1 0 Microvirga ossetica 1 species 1882682 0 306 2036754 family 3 751 0 751 1 0 28209 21 genus 3 Chelatococcus 338 0 444444 species 1 Chelatococcus daeguensis 1 no rank 2638111 0 392 Chelatococcus sp. CO-6 1 species 1702325 0 392 6 119042 no rank 0 1112 2 Methyloceanibacter 1484898 11 genus 0 339 1 Methyloceanibacter caenitepidi 1 species 1384459 0 328 0 480 1 Hartmannibacter 2 15 genus 1572860 0 465 Hartmannibacter diazotrophicus 1 species 1482074 1734920 9 genus 2 Pseudorhodoplanes 293 1 0 1 Pseudorhodoplanes sinuspersici 1235591 species 0 284 29 family 69277 Phyllobacteriaceae 20 5116 1 0 1 3514 0 68287 genus 114 9 Mesorhizobium 1 Mesorhizobium ciceri 39645 species 0 581 388 0 593909 species 1 Mesorhizobium opportunistum species 381 Mesorhizobium loti 1 352 0 Mesorhizobium japonicum 1 species 2066070 0 393 360 0 species 71433 Mesorhizobium amorphae 1 1670800 species 1 Mesorhizobium sp. B7 413 0 502 0 no rank 325217 1 Mesorhizobium sp. WSM1497 1 species 278153 0 502 411 0 536018 species 1 Mesorhizobium australicum Nitratireductor 2 4 genus 245876 0 336 1 1 Nitratireductor basaltis 472175 species 0 332 0 363 1 Aminobacter 2 14 genus 31988 0 349 Aminobacter aminovorans 1 species 83263 5 genus 274591 Hoeflea 2 364 1 0 359 0 no rank 2614931 1 1 Hoeflea sp. IMCC20628 1620421 species 0 359 2 Phyllobacterium 28100 genus 2 0 1 284 1 Phyllobacterium zundukense 1867719 species 0 282 449972 genus 4 2 Chelativorans 1 226 0 2643807 no rank 1 222 0 0 222 1 Chelativorans sp. BNC1 266779 species Hyphomicrobiaceae 18 42 family 45401 0 3735 1 1 308 0 59282 genus 10 2 Blastochloris 1079 species 1 Blastochloris viridis 298 0 genus 31 81 Hyphomicrobium 4 1 1123 0 286 0 53399 species 1 Hyphomicrobium denitrificans 0 201 1 Hyphomicrobium nitrativorans 1427356 species 2619925 no rank 1 605 0 717785 species 1 Hyphomicrobium sp. MC1 605 0 0 1 1134 Devosia 4 genus 35 46913 0 1099 3 196773 no rank 2083786 species 1 Devosia sp. I507 326 0 0 393 1 Devosia sp. A16 1736675 species 0 380 Devosia sp. H5989 1 species 1643450 1 1068 genus 0 230 1 Rhodomicrobium vannielii 1069 species 0 230 Pelagibacterium 2 genus 10 1082930 0 1 264 1 Pelagibacterium halotolerans 531813 species 0 254 0 379 1 2 Rhodoplanes 29407 11 genus 0 368 1 2619116 no rank 674703 species 1 Rhodoplanes sp. Z2-YC6860 368 0 1 255 0 119044 genus 6 2 Filomicrobium Candidatus Filomicrobium marinum 1 species 1608628 0 249 family 3 118882 Brucellaceae 20 1 2573 0 1 1008 0 234 genus 263 14 Brucella 0 12 1 Brucella ovis 236 species Brucella pinnipedialis 1 species 120576 0 41 0 33 Brucella ceti 1 species 120577 444163 species 1 Brucella microti 33 0 Brucella abortus 1 species 235 0 48 0 265 4 2632610 no rank species 1891098 Brucella sp. 2002734562 1 11 0 80 0 species 1885919 Brucella sp. 141012304 1 1 Brucella sp. 09RB8910 1844051 species 0 94 0 80 1 Brucella sp. 09RB8471 1149952 species 37 0 species 36855 Brucella canis 1 Brucella suis 1 species 29461 0 190 33 0 29459 species 1 Brucella melitensis Brucella vulpis 1 species 981386 0 53 0 1562 1 5 Ochrobactrum 528 16 genus 271865 species 1 Ochrobactrum sp. A44 290 0 Ochrobactrum pseudogrignonense 1 species 419475 0 439 0 221 1 Ochrobactrum anthropi 529 species Ochrobactrum pituitosum 1 species 571256 0 596 1 465 0 119043 family 2 3 Rhodobiaceae genus 9 256616 Parvibaculum 2 1 463 0 Parvibaculum lavamentivorans 1 species 256618 0 454 Methylocystaceae 6 5 family 31993 0 910 1 3 Methylocystis 133 14 genus 0 555 1 1 2625913 no rank 0 254 187303 species 1 Methylocystis sp. SC2 254 0 655015 species 1 Methylocystis bryophila 287 0 5 genus 425 Methylosinus 2 350 1 0 0 345 Methylosinus trichosporium 1 species 426 0 1 12726 18 Bartonellaceae 772 family 6 773 genus 265 17 Bartonella 1 12720 0 644 0 species 803 Bartonella quintana 1 0 687 Bartonella grahamii 1 species 33045 species 56426 Bartonella clarridgeiae 1 887 0 species 388640 Bartonella australis 1 440 0 728 0 species 85701 Bartonella tribocorum 1 1 Bartonella bacilliformis 774 species 0 854 0 700 Bartonella apis 1 species 1686310 species 33047 Bartonella vinsonii 1 715 0 1 Bartonella henselae 38323 species 0 671 0 5371 6 2645622 no rank 515256 species 1 Bartonella sp. 1-1C 902 0 934 0 1933906 species 1 Bartonella sp. JB15 species 1933912 Bartonella sp. Raccoon60 1 856 0 species 1933907 Bartonella sp. JB63 1 934 0 0 879 1 Bartonella sp. WD16.2 1933904 species 0 866 1 Bartonella sp. A1379B 1933910 species 0 758 Bartonella ancashensis 1 species 1318743 0 9214 1 Bradyrhizobiaceae 26 58 family 41294 0 1 266 Variibacter 2 genus 4 1649510 0 262 1 Variibacter gotjawalensis 1333996 species 1 432 0 911 genus 9 3 Nitrobacter 1 Nitrobacter hamburgensis 912 species 0 264 0 159 1 Nitrobacter winogradskyi 913 species 1 1520 0 genus 57 85413 Bosea 5 Bosea vaviloviae 1 species 1526658 0 416 1047 0 2653178 no rank 3 2015316 species 1 Bosea sp. AS-1 381 0 0 268 Bosea sp. PAMC 26642 1 species 1792307 1842539 species 1 Bosea sp. RAC05 398 0 1 2067 0 1073 genus 26 2 Rhodopseudomonas 1076 species 1 Rhodopseudomonas palustris 2041 0 0 196 1 2 Oligotropha 40136 4 genus 0 192 Oligotropha carboxidovorans 1 species 40137 126 genus 374 Bradyrhizobium 11 4675 1 0 2631580 no rank 6 2405 0 species 288000 Bradyrhizobium sp. BTAi1 1 384 0 348 0 115808 species 1 Bradyrhizobium sp. ORS 285 Bradyrhizobium sp. ORS 278 1 species 114615 0 456 1 Bradyrhizobium sp. SK17 2057741 species 0 406 0 351 1 Bradyrhizobium sp. CCGE-LA001 1223566 species 460 0 376 species 1 Bradyrhizobium sp. 745 0 species 1355477 Bradyrhizobium diazoefficiens 1 313 0 1274631 species 1 Bradyrhizobium icense species 44255 Bradyrhizobium oligotrophicum 1 445 0 0 641 1 Bradyrhizobium japonicum 375 species 335928 19 family 6 Xanthobacteraceae 1098 1 0 439 0 279 genus 1 species 280 Xanthobacter autotrophicus 1 439 0 1 308 0 6 genus 6 2 Azorhizobium 7 species 1 Azorhizobium caulinodans 302 0 2 Starkeya 152053 9 genus 0 332 1 1 Starkeya novella 921 species 0 323 45404 3 family 5 Beijerinckiaceae 595 1 0 0 378 1 Beijerinckia 2 2 genus 532 533 species 1 Beijerinckia indica 376 0 0 1 214 Methylocella 2 genus 5 120652 209 0 199596 species 1 Methylocella silvestris 121586 1 0 13 order 54526 Pelagibacterales 9 0 1 8742 Candidatus Fonsibacter 2 genus 24 2045213 1 Candidatus Fonsibacter ubiquis 1925548 species 0 8718 6 Pelagibacteraceae 1655514 family 68 0 1 112831 61790 0 1655516 no rank 2 1 alpha proteobacterium HIMB59 744985 species 0 6886 0 54904 1 alpha proteobacterium HIMB5 859653 species 198251 21 genus 3 Candidatus Pelagibacter 50973 1 0 7941 0 2647897 no rank 1 1 Candidatus Pelagibacter sp. IMCC9063 1002672 species 0 7941 43011 0 198252 species 1 Candidatus Pelagibacter ubique 0 1449 6 2800060 order 0 1449 1 Hyphomonadaceae 6 19 family 69657 711 1 0 85 24 genus 3 Hyphomonas 0 431 1 2630699 no rank 0 431 Hyphomonas sp. Mor2 1 species 1906738 0 256 Hyphomonas neptunium 1 species 81032 2723 8 genus 2 Hirschia 719 1 0 711 0 2724 species 1 Hirschia baltica 3 Magnetococcales 1191478 order 2 0 1 247 0 245 2 family 1191479 245 1 0 162171 2 genus 2 Magnetococcus 1124597 species 1 Magnetococcus marinus 243 0 4 Parvularculales 255473 1 order 0 489 1 0 488 1 3 Parvularculaceae 255474 5 family 0 1 483 2 Parvularcula 208215 genus 9 474 0 208216 species 1 Parvularcula bermudensis order 133 204441 Rhodospirillales 66 1 18716 0 Acetobacteraceae 34 54 family 433 0 6500 1 genus 1 153497 Kozakia 2 1 171 0 153496 species 1 Kozakia baliensis 170 0 Granulibacter 2 3 genus 364409 0 449 1 Granulibacter bethesdensis 1 species 364410 0 446 1012 1 0 13 genus 1434011 Komagataeibacter 5 0 212 1 Komagataeibacter medellinensis 1177712 species Komagataeibacter europaeus 1 species 33995 0 167 0 329 Komagataeibacter xylinus 1 species 28448 Komagataeibacter nataicola 1 species 265960 0 291 1 121 0 1602345 genus 1 2 Parasaccharibacter 1 Parasaccharibacter apium 1510841 species 0 120 Acetobacter 8 genus 22 434 0 1 2385 Acetobacter oryzifermentans 1 species 1633874 0 210 151157 subgenus 1 177 0 435 species 1 Acetobacter aceti 177 0 Acetobacter pomorum 1 species 65959 0 194 0 1019 1 Acetobacter pasteurianus 438 species Acetobacter senegalensis 1 species 446692 0 194 349 0 species 104102 Acetobacter tropicalis 1 0 220 1 Acetobacter persici 1076596 species 91914 8 genus 2 Asaia 136 1 0 128 0 91915 species 1 Asaia bogorensis 0 1 246 Gluconacetobacter 2 genus 9 89583 Gluconacetobacter diazotrophicus 1 species 33996 0 237 0 1 796 Roseomonas 3 genus 15 125216 428 0 2617492 no rank 1 species 2018065 Roseomonas sp. FDAARGOS_362 1 428 0 353 0 257708 species 1 Roseomonas gilardii Gluconobacter 3 genus 8 441 0 1 399 267 0 442 species 1 Gluconobacter oxydans 318683 species 1 Gluconobacter albidus 124 0 11 genus 522 Acidiphilium 3 613 1 0 319 0 62140 species 1 Acidiphilium multivorum 283 0 species 524 Acidiphilium cryptum 1 320496 genus 1 118 0 118 0 species 320497 Neoasaia chiangmaiensis 1 0 12083 1 31 Rhodospirillaceae 41295 122 family 1612157 genus 3 2 Pararhodospirillum 1 292 0 species 1084 Pararhodospirillum photometricum 1 289 0 299 1 0 3 genus 1804663 Haematospirillum 2 1549855 species 1 Haematospirillum jordaniae 296 0 0 1 473 2 Nitrospirillum 1543705 genus 1 472 0 species 28077 Nitrospirillum amazonense 1 0 885 1 Rhodospirillum 3 12 genus 1081 Rhodospirillum centenum 1 species 34018 0 500 species 1085 Rhodospirillum rubrum 1 373 0 5 Magnetospirillum 13134 64 genus 0 2133 1 0 502 1 Magnetospirillum magneticum 84159 species 1022 0 no rank 2617991 2 488 0 species 1663591 Magnetospirillum sp. XM-1 1 species 1639348 Magnetospirillum sp. ME-1 1 534 0 55518 species 1 Magnetospirillum gryphiswaldense 545 0 Thalassospira 3 21 genus 168934 0 1146 1 species 220697 Thalassospira xiamenensis 1 605 0 0 520 1 Thalassospira sp. CSC3H3 2048283 species 0 1 366 2 Magnetospira 1182780 genus 6 1 2685734 no rank 0 360 360 0 1288970 species 1 Magnetospira sp. QH-2 0 615 1 2 Tistrella 171436 6 genus 171437 species 1 Tistrella mobilis 609 0 2666 1 0 79 genus 191 Azospirillum 5 193 species 1 Azospirillum lipoferum 916 0 Azospirillum thiophilum 1 species 528244 0 559 0 821 1 Azospirillum brasilense 192 species 1 Azospirillum humicireducens 1226968 species 0 291 0 352 1 Niveispirillum 2 1 genus 1543704 0 351 1 Niveispirillum cyanobacteriorum 1612173 species 1263978 5 genus 2 Candidatus Endolissoclinum 2734 1 0 0 2729 1 Candidatus Endolissoclinum faulkneri 1263979 species 0 1 23940 Rhodobacterales 88 order 105 204455 Rhodobacteraceae 87 338 family 31989 0 23835 1 Halocynthiibacter 2 2 genus 1579315 0 387 1 1 Halocynthiibacter arcticus 1579316 species 0 385 0 1221 1 Rhodovulum 4 7 genus 34008 0 636 2 2631432 no rank Rhodovulum sp. P5 1 species 1564506 0 273 0 363 Rhodovulum sp. MB263 1 species 308754 0 578 Rhodovulum sulfidophilum 1 species 35806 0 1 465 Planktomarina 2 genus 6 1284657 0 459 1 Planktomarina temperata 1284658 species 1 0 436357 genus 1 Thalassococcus 7 genus 1097466 Defluviimonas 2 369 1 0 0 362 1 Defluviimonas alba 1335048 species Roseobacter 3 genus 11 2433 0 1 668 species 42443 Roseobacter litoralis 1 306 0 Roseobacter denitrificans 1 species 2434 0 351 0 1 472 3 Ketogulonicigenium 92944 genus 6 Ketogulonicigenium vulgare 1 species 92945 0 233 1 Ketogulonicigenium robustum 92947 species 0 233 1 genus 1759396 0 216 216 0 2622455 no rank 1 216 0 species 1920883 Marivivens sp. JLT3646 1 genus 4 119541 Rhodobaca 2 1 368 0 441209 species 1 Rhodobaca barguzinensis 364 0 360528 2 genus 2 Pelagibaca 444 1 0 Pelagibaca abyssi 1 species 1250539 0 442 0 1 321 2 Pannonibacter 227873 genus 2 species 121719 Pannonibacter phragmitetus 1 319 0 1 459 0 genus 3 367771 Marinovum 2 456 0 42444 species 1 Marinovum algicola 0 386 1 191028 genus 133924 species 1 Leisingera methylohalidivorans 386 0 1129 1 0 53945 18 genus 4 Octadecabacter Octadecabacter antarcticus 1 species 1217908 0 460 387 0 53946 species 1 Octadecabacter arcticus Octadecabacter temperatus 1 species 1458307 0 264 188905 genus 1 343 0 343 0 2645469 no rank 1 species 290400 Jannaschia sp. CCS1 1 343 0 genus 2211641 1 368 0 1 Loktanella vestfoldensis 245188 species 0 368 Paracoccus 9 35 genus 265 0 2575 1 327 0 1077935 species 1 Paracoccus zhejiangensis 292 0 34004 species 1 Paracoccus aminovorans 0 321 Paracoccus sp. CBA4604 1 species 2065379 0 366 1 Paracoccus denitrificans 266 species 285 0 34003 species 1 Paracoccus aminophilus 280 0 species 1945662 Paracoccus contaminans 1 147645 species 1 Paracoccus yeei 395 0 1 no rank 246570 0 274 274 0 species 1529068 Paracoccus sp. BM15 1 1 genus 1649279 0 280 379347 species 1 Ruegeria mobilis 280 0 2 genus 60136 0 766 Sulfitobacter pseudonitzschiae 1 species 1402135 0 368 1 no rank 196795 0 398 398 0 species 1917485 Sulfitobacter sp. AM1-D1 1 2 Thioclava 285107 3 genus 0 247 1 species 1915078 Thioclava nitratireducens 1 244 0 0 1 1856 5 Celeribacter 875170 genus 16 0 559 Celeribacter manganoxidans 1 species 1411902 1758178 species 1 Celeribacter ethanolicus 296 0 310 0 1397108 species 1 Celeribacter marinus 1208324 species 1 Celeribacter indicus 675 0 genus 263377 2 697 0 0 343 1 no rank 2640570 Yangia sp. CCB-MM3 1 species 1792508 0 343 1 Thiobacimonas profunda 1229727 species 0 354 2 genus 58842 Sagittula 2 400 1 0 1 no rank 2624628 0 398 1 Sagittula sp. P11 2009329 species 0 398 1 1609958 genus 0 448 0 448 1 no rank 2643318 448 0 1609966 species 1 Confluentimicrobium sp. EMB200-NS6 genus 26 1060 Rhodobacter 5 1 1706 0 283 0 species 1061 Rhodobacter capsulatus 1 1 Rhodobacter sphaeroides 1063 species 0 771 0 626 2 no rank 196779 species 1850250 Rhodobacter sp. LPB0142 1 318 0 2033869 species 1 Rhodobacter sp. CZR27 308 0 1 2844 0 302485 genus 39 5 Phaeobacter species 1844006 Phaeobacter porticola 1 291 0 1 Phaeobacter gallaeciensis 60890 species 0 677 221822 species 1 Phaeobacter inhibens 1255 0 0 582 1 Phaeobacter piscinae 1580596 species 307 1 0 1 genus 299261 Tateyamaria 2 306 0 species 299262 Tateyamaria omphalii 1 97050 3 genus 3 Ruegeria 776 1 0 89184 species 1 Ruegeria pomeroyi 500 0 273 0 2625375 no rank 1 Ruegeria sp. TM1040 1 species 292414 0 273 490 0 58840 no rank 2 0 230 1 Rhodobacteraceae bacterium 1904441 species 2033435 species 1 Rhodobacteraceae bacterium QY30 260 0 358 1 0 309512 2 genus 2 Dinoroseobacter 356 0 species 215813 Dinoroseobacter shibae 1 367 0 159345 genus 1 367 0 species 159346 Roseibacterium elongatum 1 478070 53 genus 4 Labrenzia 1042 1 0 2648686 no rank 2 616 0 1 Labrenzia sp. CP4 1674922 species 0 317 299 0 species 2021862 Labrenzia sp. VG12 1 187304 species 1 Labrenzia aggregata 373 0 418 1 0 2 genus 74030 Roseovarius 2 0 416 1 Roseovarius mucosus 215743 species 0 2 Loktanella 1 genus 245186 2 Antarctobacter 74032 2 genus 0 301 1 0 299 1 Antarctobacter heliothermus 74033 species 204458 order 15 20 Caulobacterales 1 3821 0 3806 1 0 76892 76 family 19 Caulobacteraceae 0 1 212 2 Asticcacaulis 76890 genus 8 Asticcacaulis excentricus 1 species 78587 0 204 41275 genus 62 7 Brevundimonas 1 1354 0 0 693 3 2622653 no rank Brevundimonas sp. GW460-12-10-14-LB2 1 species 1827469 0 154 Brevundimonas sp. LM2 1 species 1938605 0 347 192 0 species 1532555 Brevundimonas sp. DS20 1 0 184 Brevundimonas vesicularis 1 species 41276 237 0 74313 species 1 Brevundimonas subvibrioides Brevundimonas naejangsanensis 1 species 588932 0 178 1 1587 0 genus 31 75 Caulobacter 6 312 0 2648921 no rank 1 1 Caulobacter sp. K31 366602 species 0 312 260 0 species 69395 Caulobacter henricii 1 0 246 1 Caulobacter segnis 88688 species 69666 species 1 Caulobacter mirabilis 236 0 502 0 155892 species 1 Caulobacter vibrioides 20 genus 4 2 Phenylobacterium 1 359 0 284016 species 1 Phenylobacterium zucineum 355 0 0 218 1 no rank 81440 218 0 species 1759059 Caulobacteraceae bacterium OTSz_A_272 1 order 6 1921002 Holosporales 9 1 2034 0 Candidatus Paracaedibacteraceae 3 4 family 1777752 0 566 1 0 1 562 2 Candidatus Paracaedibacter 1521255 genus 11 551 0 species 91604 Candidatus Paracaedibacter acanthamoebae 1 1 643 0 family 1 44746 Holosporaceae 2 204454 no rank 1 642 0 642 0 species 86106 endosymbiont of Acanthamoeba sp. UWC8 1 3 Caedimonadaceae 2100208 family 5 0 1 819 0 1 814 2 Candidatus Nucleicultrix 1509243 genus 8 0 806 Candidatus Nucleicultrix amoebiphila 1 species 1509244 0 63964 193 68525 subphylum Epsilonproteobacteria 71 class 23 29547 0 1 35207 1 33539 0 order 54 213849 Campylobacterales 65 72294 61 family 41 Campylobacteraceae 25832 1 0 1850 1 0 57665 20 genus 9 Sulfurospirillum 1 Sulfurospirillum halorespirans 194424 species 0 132 2618290 no rank 3 928 0 1 Sulfurospirillum sp. SL2-1 1986224 species 0 267 382 0 species 1581011 Sulfurospirillum sp. UCH001 1 279 0 220622 species 1 Sulfurospirillum sp. JPD-1 207 0 44674 species 1 Sulfurospirillum barnesii 243 0 species 65553 Sulfurospirillum deleyianum 1 366522 species 1 Sulfurospirillum cavolei 122 0 198 0 66821 species 1 Sulfurospirillum multivorans 16805 1 0 194 119 genus 26 Campylobacter 1 Campylobacter avium 522485 species 0 539 1 Campylobacter gracilis 824 species 0 73 species 206 Campylobacter sputorum 1 1143 0 0 1371 1 Campylobacter jejuni 197 species 823 0 species 827 Campylobacter ureolyticus 1 1965231 species 1 Campylobacter pinnipediorum 1126 0 0 705 Campylobacter peloridis 1 species 488546 464 0 species 198 Campylobacter hyointestinalis 1 species 195 Campylobacter coli 1 1110 0 species 196 Campylobacter fetus 1 689 0 0 89 Campylobacter curvus 1 species 200 0 345 Campylobacter iguaniorum 1 species 1244531 1752 0 species 201 Campylobacter lari 1 0 2157 4 no rank 2593542 0 471 Campylobacter sp. RM12175 1 species 1660076 813 0 1500960 species 1 Campylobacter sp. RM16704 0 338 1 Campylobacter sp. RM6137 1660073 species Campylobacter sp. RM8964 1 species 1660074 0 535 0 456 1 Campylobacter concisus 199 species 683 0 species 1031542 Campylobacter volucris 1 Campylobacter insulaenigrae 1 species 260714 0 819 0 307 1 Campylobacter lanienae 75658 species 563 0 species 374106 Campylobacter cuniculorum 1 1 Campylobacter helveticus 28898 species 0 357 716 0 497724 species 1 Campylobacter subantarcticus species 76517 Campylobacter hominis 1 399 0 7116 0 no rank 2321108 5 no rank 2321207 1 1768 0 1 Arcobacter sp. L 944547 species 0 1768 Arcobacter 3 genus 18 28196 0 1 3655 0 2225 Arcobacter butzleri 1 species 28197 1 Arcobacter nitrofigilis 28199 species 0 1412 2321187 genus 1 1693 0 1693 0 1850254 species 1 Arcobacter sp. LPB0137 860 0 family 2771472 5 1 321 0 269260 genus 1 2 Nitratifractor 0 320 1 Nitratifractor salsuginis 269261 species 3 Sulfurovum 265570 genus 14 0 1 539 233 0 2646778 no rank 1 233 0 387093 species 1 Sulfurovum sp. NBC37-1 1 Sulfurovum lithotrophicum 206403 species 0 292 1043 0 family 2771471 4 105 0 genus 286130 1 species 148813 Sulfuricurvum kujiense 1 105 0 1 938 0 202746 genus 3 3 Sulfurimonas Sulfurimonas denitrificans 1 species 39766 0 523 Sulfurimonas autotrophica 1 species 202747 0 412 0 1 5750 Helicobacteraceae 14 family 4 72293 209 14 genus 12 Helicobacter 5634 1 0 1 Helicobacter mustelae 217 species 0 149 0 452 1 Helicobacter cetorum 138563 species 108 0 species 214 Helicobacter felis 1 1 no rank 2593540 0 142 species 222136 Helicobacter sp. MIT 01-6242 1 142 0 1 Helicobacter pylori 210 species 0 3401 301 0 species 37372 Helicobacter bilis 1 1 Helicobacter cinaedi 213 species 0 229 0 166 Helicobacter himalayensis 1 species 1591088 167 0 76936 species 1 Helicobacter typhlonius 0 298 Helicobacter hepaticus 1 species 32025 0 207 Helicobacter acinonychis 1 species 212 843 genus 1 112 0 Wolinella succinogenes 1 species 844 0 112 0 1645 1 5 Nautiliales 235899 1 order 224467 2 family 3 Nautiliaceae 1384 1 0 1382 1 0 191291 2 genus 2 Nautilia 0 1380 Nautilia profundicola 1 species 244787 2795691 family 1 260 0 260 0 genus 269258 1 0 260 1 no rank 2624044 387092 species 1 Nitratiruptor sp. SB155-2 260 0 0 28757 1 Deltaproteobacteria 122 35 class 28221 0 1051 4 order 213113 1 1051 0 117942 family 2 4 Desulfurellaceae 301 0 genus 84404 1 species 84405 Hippea maritima 1 301 0 Desulfurella 2 genus 1 33001 0 1 748 species 33002 Desulfurella acetivorans 1 747 0 453227 2 order 4 Desulfarculales 198 1 0 453228 family 4 3 Desulfarculaceae 1 196 0 0 1 192 Desulfarculus 2 genus 2 453229 190 0 453230 species 1 Desulfarculus baarsii 1 650 0 213462 order 4 10 Syntrophobacterales 213468 3 family 6 Syntrophaceae 433 1 0 119 1 0 4 genus 43773 Syntrophus 2 0 115 1 Syntrophus aciditrophicus 316277 species 1 173 0 genus 3 2357 Desulfomonile 2 170 0 2358 species 1 Desulfomonile tiedjei 60892 genus 1 138 0 0 138 1 Desulfobacca acetoxidans 60893 species 0 1 213 Syntrophobacteraceae 3 family 3 213465 0 210 1 Syntrophobacter 2 3 genus 29526 1 Syntrophobacter fumaroxidans 119484 species 0 207 Desulfuromonadales 24 order 44 69541 0 1 4354 0 1 3079 14 Geobacteraceae 213422 family 20 1 164 0 genus 3 392332 Geoalkalibacter 2 1 Geoalkalibacter subterraneus 483547 species 0 161 11 Geobacter 28231 genus 33 0 1 2895 1340425 species 1 Geobacter anodireducens 109 0 0 151 Geobacter lovleyi 1 species 313985 1 Geobacter metallireducens 28232 species 0 389 345632 species 1 Geobacter pickeringii 184 0 0 195 Geobacter daltonii 1 species 1203471 2 2627627 no rank 0 534 443143 species 1 Geobacter sp. M18 373 0 0 161 1 Geobacter sp. M21 443144 species 0 129 Geobacter sulfurreducens 1 species 35554 351604 species 1 Geobacter uraniireducens 960 0 225194 species 1 Geobacter bemidjiensis 211 0 Desulfuromonadaceae 9 family 4 213421 0 1 1231 0 594 1 Pelobacter 5 11 genus 18 29542 species 1 Pelobacter acetylenicus 160 0 149 0 species 29543 Pelobacter propionicus 1 19 species 1 Pelobacter carbinolicus 150 0 0 124 1 no rank 2620299 Pelobacter sp. SFB93 1 species 1842532 0 124 Desulfuromonas 3 7 genus 890 0 633 1 2614637 no rank 1 200 0 species 1823759 Desulfuromonas sp. DDH964 1 200 0 426 0 1603606 species 1 Desulfuromonas soudanensis 1 3507 0 order 32 213115 Desulfovibrionales 25 0 3104 1 Desulfovibrionaceae 18 26 family 194924 170 0 genus 2794998 1 0 170 1 Desulfovibrio salexigens 880 species 1 genus 2582840 0 151 873 species 1 Desulfovibrio africanus 151 0 1656 1 0 872 17 genus 9 Desulfovibrio 0 126 1 Desulfovibrio alaskensis 58180 species 1 2593640 no rank 0 110 Desulfovibrio sp. G11 1 species 631220 0 110 species 44742 Desulfovibrio fairfieldensis 1 98 0 116 0 901 species 1 Desulfovibrio piger 51 0 1725232 species 1 Candidatus Desulfovibrio trichonymphae 881 species 1 Desulfovibrio vulgaris 560 0 species 184917 Desulfovibrio magneticus 1 322 0 0 256 1 Desulfovibrio desulfuricans 876 species 0 461 1 Pseudodesulfovibrio 4 5 genus 2035811 152 0 species 182210 Pseudodesulfovibrio aespoeensis 1 Pseudodesulfovibrio indicus 1 species 1716143 0 179 0 125 1 Pseudodesulfovibrio profundus 57320 species 41707 1 genus 2 Lawsonia 640 1 0 639 0 species 29546 Lawsonia intracellularis 1 213116 family 3 253 0 genus 5 898 Desulfomicrobium 3 1 253 0 106 0 species 132132 Desulfomicrobium orale 1 species 899 Desulfomicrobium baculatum 1 142 0 213117 family 1 3 Desulfohalobiaceae 1 118 0 1 117 0 genus 1 45662 Desulfohalobium 2 1 Desulfohalobium retbaense 45663 species 0 116 0 1 3576 18 Desulfobacterales 213118 order 26 0 901 1 8 Desulfobulbaceae 213121 11 family 1 genus 427922 0 160 1 Desulfurivibrio alkaliphilus 427923 species 0 160 109168 6 genus 2 Desulfotalea 318 1 0 1 Desulfotalea psychrophila 84980 species 0 312 893 genus 2 2 Desulfobulbus 1 128 0 0 126 1 Desulfobulbus sp. ORNL 1986146 species 284 1 0 53318 2 genus 2 Desulfocapsa 282 0 65555 species 1 Desulfocapsa sulfexigens 1 2649 0 family 7 213119 Desulfobacteraceae 9 genus 28222 1 875 0 28223 species 1 Desulfobacula toluolica 875 0 172 1 0 2 genus 2295 Desulfobacterium 2 species 2296 Desulfobacterium autotrophicum 1 170 0 0 1 1049 Desulfatibacillum 2 genus 2 218207 0 1047 Desulfatibacillum alkenivorans 1 species 259354 896 genus 6 3 Desulfococcus 1 546 0 Desulfococcus oleovorans 1 species 181663 0 348 0 192 1 Desulfococcus multivorans 897 species 1 15386 0 29 order 140 36 Myxococcales 0 7900 24 suborder 80811 1 1334 0 family 4 1524215 Anaeromyxobacteraceae 5 1 1330 0 161492 genus 12 4 Anaeromyxobacter 2620896 no rank 2 751 0 Anaeromyxobacter sp. Fw109-5 1 species 404589 0 436 species 447217 Anaeromyxobacter sp. K 1 315 0 species 161493 Anaeromyxobacter dehalogenans 1 567 0 0 1 314 Vulgatibacteraceae 2 family 1 1524213 0 313 1 genus 1524214 1391653 species 1 Vulgatibacter incomptus 313 0 Myxococcaceae 9 11 family 31 0 3397 1 1 1005 0 genus 12 83461 Corallococcus 3 0 534 1 Corallococcus coralloides 184914 species 0 459 1 Myxococcus macrosporus 35 species 32 54 genus 5 Myxococcus 2381 1 0 34 species 1 Myxococcus xanthus 404 0 471 0 83455 species 1 Myxococcus stipitatus 33 species 1 Myxococcus fulvus 986 0 466 0 1297742 species 1 Myxococcus hansupus 39 family 35 8 Archangiaceae 1 2855 0 3 genus 47 Archangium 2 1488 1 0 1485 0 48 species 1 Archangium gephyra 0 1 417 2 Melittangium 44 genus 1 species 83453 Melittangium boletus 1 416 0 0 396 1 40 genus 1 Stigmatella aurantiaca 41 species 0 396 519 1 0 42 2 genus 2 Cystobacter species 43 Cystobacter fuscus 1 517 0 suborder 224462 3 1148 0 224464 7 family 3 Kofleriaceae 1148 1 0 1 1141 0 162027 genus 7 2 Haliangium 0 1134 1 Haliangium ochraceum 80816 species 8 80812 suborder 0 6198 848 1 0 1055686 5 family 3 Sandaracinaceae 0 1 843 2 Sandaracinus 1055688 genus 6 species 927083 Sandaracinus amylolyticus 1 837 0 49 family 23 5 Polyangiaceae 1 5350 0 0 661 1 Chondromyces 2 1 genus 50 0 660 Chondromyces crocatus 1 species 52 39643 genus 6 2 Sorangium 1 4666 0 4660 0 56 species 1 Sorangium cellulosum phylum 200930 10 2767 0 0 2767 1 10 Deferribacteres 68337 1 class 191393 7 order 9 Deferribacterales 2766 1 0 Deferribacteraceae 8 16 family 191394 0 2759 1 1 904 0 2351 genus 1 2 Flexistipes species 2352 Flexistipes sinusarabici 1 903 0 Denitrovibrio 2 4 genus 117999 0 333 1 species 118000 Denitrovibrio acetiphilus 1 329 0 1 genus 545865 0 394 0 394 Calditerrivibrio nitroreducens 1 species 477976 1112 1 0 53572 2 genus 2 Deferribacter 0 1110 1 Deferribacter desulfuricans 197162 species 200783 phylum 26 4315 0 1 4315 0 187857 class 6 26 Aquificae 0 1 3616 21 Aquificales 32069 order 7 family 3 64898 Aquificaceae 12 1 1750 0 2713 genus 1 87 0 87 0 species 63363 Aquifex aeolicus 1 1395 1 0 54 genus 168657 Hydrogenobaculum 6 1341 0 2622382 no rank 5 0 264 1 Hydrogenobaculum sp. SN 547146 species 0 264 1 Hydrogenobaculum sp. HO 547144 species Hydrogenobaculum sp. Y04AAS1 1 species 380749 0 285 1 Hydrogenobaculum sp. SHO 547145 species 0 264 Hydrogenobaculum sp. 3684 1 species 547143 0 264 1 171 0 genus 4 75905 Thermocrinis 3 Thermocrinis albus 1 species 136094 0 95 species 75906 Thermocrinis ruber 1 72 0 0 94 1 939 genus 940 species 1 Hydrogenobacter thermophilus 94 0 0 169 2 90150 no rank 0 169 1 Thermosulfidibacter 2 2 genus 412592 1 Thermosulfidibacter takaii 412593 species 0 167 0 1 1690 6 Hydrogenothermaceae 224027 family 3 2 genus 182899 Persephonella 2 374 1 0 1 Persephonella marina 309805 species 0 372 1313 1 0 8 genus 212790 Sulfurihydrogenibium 3 1 no rank 2619248 0 679 1 Sulfurihydrogenibium sp. YO3AOP1 436114 species 0 679 1 Sulfurihydrogenibium azorense 309806 species 0 626 order 1485951 4 693 0 558314 2 family 4 Desulfurobacteriaceae 693 1 0 1 genus 171868 0 73 228745 species 1 Thermovibrio ammonificans 73 0 genus 1 64159 Desulfurobacterium 2 1 618 0 Desulfurobacterium thermolithotrophum 1 species 64160 0 617 32066 phylum 25 19379 0 class 17 203490 Fusobacteriia 25 1 19379 0 203491 28 order 24 Fusobacteriales 19362 1 0 14935 1 0 203492 10 family 12 Fusobacteriaceae 1 577 0 genus 1 167639 Ilyobacter 2 Ilyobacter polytropus 1 species 167642 0 576 0 1 14348 9 Fusobacterium 848 genus 54 1 Fusobacterium mortiferum 850 species 0 772 Fusobacterium varium 1 species 856 0 1686 0 6036 1 Fusobacterium nucleatum 851 species species 849 Fusobacterium gonidiaformans 1 475 0 1463 0 1583098 species 1 Fusobacterium hwasookii species 859 Fusobacterium necrophorum 1 261 0 0 2724 1 Fusobacterium periodonticum 860 species 0 877 Fusobacterium ulcerans 1 species 861 0 1 4399 Leptotrichiaceae 11 family 12 1129771 0 1 2510 Leptotrichia 5 genus 18 32067 660 0 species 40542 Leptotrichia buccalis 1 3 no rank 2633022 0 1832 0 674 1 Leptotrichia sp. oral taxon 847 1785996 species 0 635 1 Leptotrichia sp. oral taxon 498 712368 species 712357 species 1 Leptotrichia sp. oral taxon 212 523 0 1 554 0 genus 1 168808 Sneathia 2 0 553 Sneathia amnii 1 species 187101 0 552 1 32068 genus species 826 Sebaldella termitidis 1 552 0 0 1 771 Streptobacillus 2 genus 1 34104 770 0 species 34105 Streptobacillus moniliformis 1 1604 0 57723 phylum 16 0 1 1460 Acidobacteriia 14 class 2 204432 204433 order 6 11 Acidobacteriales 1 1212 0 0 1206 1 10 Acidobacteriaceae 204434 6 family 392733 genus 2 362 0 1 Terriglobus roseus 392734 species 0 145 0 217 1 Terriglobus saanensis 870903 species 382 1 0 940557 2 genus 3 Granulicella 154 0 940614 species 1 Granulicella mallensis 0 226 1 Granulicella tundricola 940615 species 2 Acidobacterium 33973 genus 2 0 1 306 33075 species 1 Acidobacterium capsulatum 304 0 2 Candidatus Koribacter 658061 2 genus 0 150 1 658062 species 1 Candidatus Koribacter versatilis 148 0 0 246 2 order 332160 246 0 family 332161 2 0 246 1 Candidatus Solibacter 2 7 genus 332162 332163 species 1 Candidatus Solibacter usitatus 239 0 1562566 1 class 2 Blastocatellia 144 1 0 1 genus 458032 0 143 143 0 species 458033 Chloracidobacterium thermophilum 1 3 1930617 phylum 0 384 3 1962850 class 0 384 3 Calditrichales 1962852 order 1 0 1 384 2 1962854 family 0 383 Caldithrix 2 1 genus 187144 0 383 1 0 382 1 Caldithrix abyssi 187145 species 89 1783257 clade 0 11439 0 5035 35 203682 phylum 0 1 730 Phycisphaerae 7 class 3 666505 498 1 0 666506 12 order 4 Phycisphaerales 0 1 486 Phycisphaeraceae 3 family 2 666507 Phycisphaera 2 genus 1 666508 0 1 484 0 483 1 Phycisphaera mikurensis 547188 species 229 0 2483366 order 2 2 2483367 family 0 229 0 229 2 2483368 genus 0 126 Phycisphaerae bacterium ST-PulAB-D4 1 species 1941349 Phycisphaerae bacterium L21-RPul-D3 1 species 1940790 0 103 0 1086 3 class 2517206 Candidatus Brocadiales 3 1 order 1127829 0 1086 1 1127830 family 2 1085 0 1 genus 380738 Candidatus Kuenenia 2 1085 1 0 0 1084 1 Candidatus Kuenenia stuttgartiensis 174633 species Planctomycetia 25 7 class 203683 0 3219 1 5 order 2691354 0 644 523 0 2691357 family 4 306 1 0 1 genus 123 Pirellula 2 305 0 species 125 Pirellula staleyi 1 Rhodopirellula 2 4 genus 265488 0 217 1 0 213 Rhodopirellula baltica 1 species 265606 0 121 1 2691358 family genus 1676125 1 121 0 1331910 species 1 Thermogutta terrifontis 121 0 order 2691356 7 917 0 0 917 1 Isosphaeraceae 7 10 family 1763524 Paludisphaera 2 2 genus 1763521 0 314 1 0 312 Paludisphaera borealis 1 species 1387353 0 296 1 Singulisphaera 2 8 genus 466152 0 288 Singulisphaera acidiphila 1 species 466153 genus 8 127 Isosphaera 2 1 297 0 289 0 species 128 Isosphaera pallida 1 0 339 2 order 2691355 1914233 family 2 339 0 1 339 0 113 genus 14 2 Gemmata 1 2622970 no rank 0 325 325 0 1630693 species 1 Gemmata sp. SH-PL17 10 Planctomycetales 112 order 37 0 1 1312 1 1275 0 family 20 126 Planctomycetaceae 9 Fuerstia 2 3 genus 1936111 0 283 1 1891926 species 1 Fuerstia marisgermanicae 280 0 0 1 238 2 Rubinisphaera 1649490 genus 2 0 236 1 Rubinisphaera brasiliensis 119 species 0 613 1 3 Planctomyces 118 12 genus 601 0 no rank 2648843 2 351 0 species 1636152 Planctomyces sp. SH-PL62 1 0 250 1 Planctomyces sp. SH-PL14 1632864 species 1649480 genus 1 121 0 120 species 1 Planctopirus limnophila 121 0 2 phylum 256845 0 181 class 2 1313211 Lentisphaeria 2 1 181 0 1 order 278082 0 179 179 0 no rank 1674876 1 1 Victivallales bacterium CCUG 44730 2094242 species 0 179 3166 1 0 74201 1 phylum 26 Verrucomicrobia 4 class 414999 Opitutae 11 1852 1 0 863 0 415001 order 3 1 863 0 415002 family 4 3 Puniceicoccaceae 859 1 0 442430 1 genus 2 Coraliomargarita Coraliomargarita akajimensis 1 species 395922 0 858 0 1 985 7 Opitutales 415000 order 8 977 1 0 134623 7 family 6 Opitutaceae 0 301 1 2 Lacunisphaera 1961799 1 genus 1 Lacunisphaera limnophila 1838286 species 0 300 0 341 1 no rank 278955 794903 species 1 Opitutaceae bacterium TAV5 341 0 0 1 328 2 Opitutus 178440 genus 2 107709 species 1 Opitutus terrae 326 0 299 0 class 203494 4 1 299 0 48461 order 3 4 Verrucomicrobiales 1647988 family 3 296 0 1 296 0 239934 genus 8 3 Akkermansia 0 147 Akkermansia muciniphila 1 species 239935 1 Akkermansia glycaniphila 1679444 species 0 141 Spartobacteria 3 1 class 134549 0 68 1 0 1 67 2 Candidatus Xiphinematobacter 134550 genus 2 1 2648876 no rank 0 65 0 65 Candidatus Xiphinematobacter sp. Idaho Grape 1 species 1704307 474 0 417295 no rank 2 2026799 species 1 Verrucomicrobia bacterium 275 0 0 199 Verrucomicrobia bacterium IMCC26134 1 species 1637999 1955630 class 1 5 Methylacidiphilae 1 472 0 Methylacidiphilales 4 5 order 717963 0 471 1 0 466 1 Methylacidiphilaceae 3 4 family 717964 462 0 511745 genus 2 164 0 species 511746 Methylacidiphilum infernorum 1 0 298 Methylacidiphilum fumariolicum 1 species 591154 0 392 4 phylum 134625 4 1921781 class 0 392 4 Kiritimatiellales 1921782 4 order 0 392 1 1921783 5 family 3 Kiritimatiellaceae 388 1 0 1 genus 1921784 Kiritimatiella 2 383 1 0 0 382 1 Kiritimatiella glycovorans 1307763 species 204428 phylum 22 2665 0 0 2665 22 class 204429 0 812 1 Parachlamydiales 9 5 order 1963360 92714 family 2 154 0 2 Waddlia 71666 genus 1 0 1 154 0 153 Waddlia chondrophila 1 species 71667 Parachlamydiaceae 5 1 family 92713 0 507 1 0 1 171 Candidatus Protochlamydia 2 genus 2 282132 0 169 1 Candidatus Protochlamydia naegleriophila 389348 species 1 335 0 83551 genus 2 2 Parachlamydia species 83552 Parachlamydia acanthamoebae 1 333 0 92712 family 1 146 0 1 genus 34093 0 146 146 0 species 83561 Simkania negevensis 1 1 1853 0 order 5 51291 Chlamydiales 13 12 809 family 0 1848 0 1848 12 no rank 1113537 genus 17 810 Chlamydia 12 1 1848 0 Chlamydia pecorum 1 species 85991 0 221 Chlamydia abortus 1 species 83555 0 162 1 Chlamydia avium 1457141 species 0 163 83558 species 1 Chlamydia pneumoniae 219 0 0 131 Chlamydia muridarum 1 species 83560 1 Chlamydia suis 83559 species 0 102 Chlamydia caviae 1 species 83557 0 171 139 0 813 species 1 Chlamydia trachomatis 137 0 1457153 species 1 Chlamydia gallinacea Chlamydia felis 1 species 83556 0 148 238 0 species 83554 Chlamydia psittaci 1 0 455 8 phylum 508458 8 Synergistia 649775 1 class 0 455 1 0 1 454 Synergistales 7 order 2 649776 6 family 649777 0 452 genus 336260 1 104 0 1 Thermovirga lienii 336261 species 0 104 57 0 49894 genus 1 species 97477 Acetomicrobium mobile 1 57 0 81466 genus 1 100 0 100 0 species 81468 Aminobacterium colombiense 1 0 1 106 2 Cloacibacillus 508459 genus 1 Cloacibacillus porcorum 1 species 1197717 0 105 0 85 1 genus 81461 Thermanaerovibrio acidaminovorans 1 species 81462 0 85 266 0 2498710 clade 3 phylum 67814 3 266 0 0 266 3 class 693071 1 266 0 order 2 693072 Caldisericales 3 0 264 2 family 693073 2 Caldisericum 693074 genus 1 0 1 264 263 0 species 693075 Caldisericum exile 1 2157 superkingdom 283 39010 0 59 1783275 clade 0 6256 Thaumarchaeota 17 1 phylum 651137 0 3555 1 651142 no rank 5 459 0 283 1 0 10 genus 1593364 Candidatus Nitrosopelagicus 2 1 Candidatus Nitrosopelagicus brevis 1410606 species 0 273 2 genus 1825023 Candidatus Nitrosotenuis 3 176 1 0 0 58 Candidatus Nitrosotenuis sp. AQ6f 1 species 1846278 1603555 species 1 Candidatus Nitrosotenuis cloacae 116 0 31932 4 order 7 Nitrosopumilales 876 1 0 0 872 1 6 Nitrosopumilaceae 338190 3 family 0 1 533 Nitrosopumilus 3 genus 10 338191 256 0 1580092 species 1 Candidatus Nitrosopumilus adriaticus 267 0 1229909 species 1 Candidatus Nitrosopumilus sediminis 0 336 1 Candidatus Nitrosomarinus 2 1 genus 1993653 335 0 1898749 species 1 Candidatus Nitrosomarinus catalina class 1 1643678 Nitrososphaeria 4 1 2219 0 1968909 order 1 1502 0 1 family 1968910 0 1502 0 1502 1 genus 498374 1 Candidatus Nitrosocaldus islandicus 2045011 species 0 1502 order 1 1033996 Nitrososphaerales 2 1 716 0 1 family 1033997 0 715 0 715 1 genus 497726 species 1034015 Nitrososphaera viennensis 1 715 0 0 2642 41 phylum 28889 183924 class 3 41 Thermoprotei 1 2642 0 1 490 0 2266 order 1 13 Thermoproteales 317 1 0 1 family 2267 Thermoproteaceae 7 2270 genus 2 78 0 0 39 1 Thermoproteus tenax 2271 species species 184117 Thermoproteus uzoniensis 1 39 0 1 76886 genus 0 64 64 0 species 76887 Caldivirga maquilingensis 1 2276 genus 1 55 0 1 Pyrobaculum islandicum 2277 species 0 55 0 119 2 genus 164450 65 0 species 164451 Vulcanisaeta distributa 1 985052 species 1 Vulcanisaeta moutnovskia 54 0 114378 family 5 172 0 2 genus 2268 Thermofilum 5 172 1 0 Thermofilum uzonense 1 species 1550241 0 56 34 0 species 1365176 Thermofilum adornatus 1 Thermofilum pendens 1 species 2269 0 43 37 0 species 1483572 Thermofilum carboxyditrophus 1 1 594 0 order 1 114380 Desulfurococcales 14 0 203 4 family 2307 1 52 0 2308 genus 2 2 Pyrodictium 1 Pyrodictium delaneyi 1273541 species 0 50 54247 genus 1 107 0 0 107 Hyperthermus butylicus 1 species 54248 1 54251 genus 0 44 species 54252 Pyrolobus fumarii 1 44 0 2272 5 family 9 Desulfurococcaceae 390 1 0 44 0 54258 genus 2 22 0 species 160233 Ignicoccus hospitalis 1 0 22 1 Ignicoccus islandicus 54259 species 223 0 2279 genus 2 1 Staphylothermus hellenicus 84599 species 0 72 Staphylothermus marinus 1 species 2280 0 151 477695 genus 1 25 0 25 0 species 1200300 Thermogladius calderae 1 2 genus 2273 0 75 62 0 species 94694 Desulfurococcus amylolyticus 1 13 0 species 2275 Desulfurococcus mucosus 1 18 0 genus 54253 1 18 0 species 54254 Thermosphaera aggregans 1 10 order 2281 0 1326 10 118883 family 0 1326 1 168 0 12914 genus 1 2 Acidianus 1 Acidianus hospitalis 563177 species 0 167 257 0 genus 69655 1 257 0 111955 species 1 Sulfolobus tokodaii 196 0 2100760 genus 1 1 Sulfolobus solfataricus 2287 species 0 196 genus 41980 2 131 0 Metallosphaera cuprina 1 species 1006005 0 82 49 0 species 43687 Metallosphaera sedula 1 574 1 0 2284 2 genus 4 Sulfolobus 1 Sulfolobus islandicus 43080 species 0 332 141 0 no rank 2641160 1 1 Sulfolobus sp. A20 1891280 species 0 141 1 Sulfolobus acidocaldarius 2285 species 0 99 229 0 871006 order 3 2 255472 family 0 206 genus 2 200414 Caldisphaera 2 1 206 0 1 Caldisphaera lagunensis 200415 species 0 204 1 871007 family 0 23 genus 105850 1 23 0 0 23 Acidilobus saccharovorans 1 species 242703 0 59 1 51967 phylum 1 genus 498845 0 59 species 498846 Candidatus Korarchaeum cryptofilum 1 59 0 0 32717 1 Euryarchaeota 223 4 phylum 28890 4324 0 183968 class 39 39 2258 order 0 4324 0 4324 1 Thermococcaceae 39 2 family 2259 0 76 1 genus 83867 1 Palaeococcus pacificus 971279 species 0 76 8 Pyrococcus 2260 8 genus 0 408 1 0 49 1 Pyrococcus kukulkanii 1609559 species 50 0 species 53953 Pyrococcus horikoshii 1 2261 species 1 Pyrococcus furiosus 74 0 29292 species 1 Pyrococcus abyssi 47 0 Pyrococcus yayanosii 1 species 1008460 0 22 2629106 no rank 2 158 0 104 0 species 1183377 Pyrococcus sp. ST04 1 Pyrococcus sp. NA2 1 species 342949 0 54 2263 15 genus 29 Thermococcus 3838 1 0 0 60 1 Thermococcus gammatolerans 187878 species 1 Thermococcus sibiricus 172049 species 0 114 0 21 1 Thermococcus cleftensis 163003 species 0 18 1 Thermococcus peptonophilus 53952 species Thermococcus gorgonarius 1 species 71997 0 25 0 36 Thermococcus piezophilus 1 species 1712654 124 0 species 55802 Thermococcus barophilus 1 6 no rank 2627626 0 182 1 Thermococcus sp. EXT12c 2016361 species 0 25 0 34 Thermococcus sp. 4557 1 species 1042877 16 0 species 122420 Thermococcus sp. P6 1 species 246969 Thermococcus sp. AM4 1 32 0 0 19 1 Thermococcus sp. 5-4 2008440 species Thermococcus sp. 2319x1 1 species 1674923 0 56 1 Thermococcus chitonophagus 54262 species 0 76 41 0 species 277988 Thermococcus thioreducens 1 0 19 1 Thermococcus radiotolerans 187880 species 582419 species 1 Thermococcus paralvinellae 104 0 28 0 110164 species 1 Thermococcus guaymasensis 0 24 1 Thermococcus nautili 195522 species 0 2679 1 Thermococcus siculi 72803 species 1505907 species 1 Thermococcus eurythermalis 22 0 species 54077 Thermococcus barossii 1 26 0 64 0 species 2265 Thermococcus litoralis 1 0 32 1 Thermococcus kodakarensis 311400 species 45 0 49899 species 1 Thermococcus profundus 1 Thermococcus pacificus 71998 species 0 15 31 0 species 2264 Thermococcus celer 1 37 0 species 342948 Thermococcus onnurineus 1 clade 2290931 109 18332 0 2 class 224756 Methanomicrobia 49 6720 1 0 0 383 4 570264 order 1 family 570265 Methanocellaceae 4 383 1 0 8 genus 570266 Methanocella 3 382 1 0 306 0 1175445 species 1 Methanocella arvoryzae 1175444 species 1 Methanocella conradii 68 0 0 809 1 17 Methanomicrobiales 2191 9 order 0 119 2 family 196137 0 1 119 Methanospirillum 2 genus 7 2202 Methanospirillum hungatei 1 species 2203 0 112 2 88404 family 0 86 86 1 0 2192 5 genus 2 Methanocorpusculum 0 81 Methanocorpusculum labreanum 1 species 83984 0 340 1 Methanomicrobiaceae 7 5 family 2194 genus 2 230355 Methanolacinia 2 1 87 0 54120 species 1 Methanolacinia petrolearia 85 0 genus 2 45989 Methanoculleus 4 1 248 0 0 77 1 Methanoculleus bourgensis 83986 species 108 0 species 2198 Methanoculleus marisnigri 1 no rank 2619537 1 61 0 61 0 86622 species 1 Methanoculleus sp. MAB1 1198451 8 family 5 Methanoregulaceae 255 1 0 genus 475087 1 103 0 103 0 475088 species 1 Methanosphaerula palustris 0 1 144 3 Methanoregula 395331 genus 5 species 882104 Methanoregula formicica 1 65 0 74 0 358766 species 1 Methanoregula boonei 1 5526 0 94695 order 13 27 Methanosarcinales 3 family 143067 0 288 3 Methanothrix 2222 7 genus 0 288 1 1 Methanothrix soehngenii 2223 species 0 166 115 0 species 301375 Methanosaeta harundinacea 1 0 5225 1 23 Methanosarcinaceae 2206 8 family 170 0 genus 196136 1 170 0 39669 species 1 Methanosalsum zhilinae 0 91 1 Methanomethylovorans 2 5 genus 101191 86 0 species 101192 Methanomethylovorans hollandica 1 268 0 genus 2225 2 Methanococcoides burtonii 1 species 29291 0 119 1 Methanococcoides methylutens 2226 species 0 149 2 genus 2175 0 255 109 0 species 2177 Methanohalophilus halophilus 1 Methanohalophilus mahii 1 species 2176 0 146 genus 2321 1 379 0 2322 species 1 Methanohalobium evestigatum 379 0 Methanosarcina 13 11 genus 2207 0 3976 1 487 0 2209 species 1 Methanosarcina mazei species 418008 Methanosarcina horonobensis 1 157 0 1 Methanosarcina siciliae 38027 species 0 774 233 0 170861 species 1 Methanosarcina lacustris 0 970 1 Methanosarcina barkeri 2208 species 2214 species 1 Methanosarcina acetivorans 180 0 4 no rank 2644672 0 760 species 1434102 Methanosarcina sp. WH1 1 131 0 Methanosarcina sp. MTP4 1 species 1434100 0 274 0 209 Methanosarcina sp. Kolksee 1 species 1434099 1434103 species 1 Methanosarcina sp. WWM596 146 0 2215 species 1 Methanosarcina vacuolata 257 0 147 0 species 2210 Methanosarcina thermophila 1 78 0 genus 2220 1 1 Methanolobus psychrophilus 420950 species 0 78 26 class 183963 Halobacteria 60 11612 1 0 0 1 5035 18 Haloferacales 1644055 order 57 1644056 family 12 9 Haloferacaceae 1 4029 0 1 906 0 2251 genus 6 4 Haloferax 0 402 Haloferax gibbonsii 1 species 35746 0 375 1 Haloferax volcanii 2246 species 2252 species 1 Haloferax mediterranei 123 0 107 1 0 3 genus 60846 Halogeometricum 2 1 Halogeometricum borinquense 60847 species 0 104 2 Haloquadratum 293431 genus 4 0 1 3004 0 3000 Haloquadratum walsbyi 1 species 293091 0 1 789 Halorubraceae 7 family 1 1963271 2 genus 1644057 Salinigranum 2 334 1 0 Salinigranum rubrum 1 species 755307 0 332 1 300 0 56688 genus 3 3 Halorubrum 0 125 Halorubrum lacusprofundi 1 species 2247 Halorubrum trapanicum 1 species 29284 0 172 0 154 1 genus 1209988 Halopenitus persicus 1 species 1048396 0 154 0 160 1 2678336 no rank 160 0 species 756883 halophilic archaeon DL31 1 1 1507 0 order 9 2235 Halobacteriales 24 888 1 0 2 family 1963268 Haloarculaceae 14 5 genus 2237 Haloarcula 5 318 1 0 1 Haloarcula marismortui 2238 species 0 84 0 62 1 Haloarcula hispanica 51589 species 2624677 no rank 1 88 0 0 88 1 Haloarcula sp. CBA1115 1592728 species species 1932004 Haloarcula taiwanensis 1 79 0 2 146825 genus 0 140 species 146826 Halorhabdus utahensis 1 72 0 430914 species 1 Halorhabdus tiamatea 68 0 0 124 1 1073987 genus 2648975 no rank 1 124 0 1 Halorientalis sp. IM1011 1932360 species 0 124 63743 1 genus 3 Natronomonas 183 1 0 1 Natronomonas pharaonis 2257 species 0 87 1 Natronomonas moolapensis 416273 species 0 95 1 121 0 203135 genus 2 2 Halomicrobium 57705 species 1 Halomicrobium mukohataei 119 0 610 1 0 1 family 2236 Halobacteriaceae 9 0 59 1 genus 1656823 Halanaeroarchaeum sulfurireducens 1 species 1604004 0 59 1 332246 genus 0 83 0 83 1 Halalkalicoccus jeotgali 413810 species 0 417 1 Halobacterium 4 3 genus 2239 182 0 species 1407499 Halobacterium hubeiense 1 0 112 Halobacterium salinarum 1 species 2242 0 120 1 2668073 no rank species 751944 Halobacterium sp. DL1 1 120 0 0 1 50 Halodesulfurarchaeum 2 genus 1 1980514 Halodesulfurarchaeum formicicum 1 species 1873524 0 49 1 5044 0 order 45 1644060 Natrialbales 17 16 Natrialbaceae 1644061 17 family 0 4999 1 0 145 1 genus 1269201 1 no rank 2621923 0 145 species 1333523 Salinarchaeum sp. Harcht-Bsk1 1 145 0 461 0 121871 genus 2 294 0 588898 species 1 Haloterrigena daqingensis 62320 species 1 Haloterrigena turkmenica 167 0 63742 4 genus 2 Natrialba 3156 1 0 3152 0 13769 species 1 Natrialba magadii 0 80 1 genus 353799 1 Halostagnicola larsenii 353800 species 0 80 0 1 244 Natrinema 3 genus 1 88723 species 69525 Natrinema pellirubrum 1 140 0 0 103 1 2622230 no rank Natrinema sp. J7-2 1 species 406552 0 103 387342 genus 1 201 0 201 0 species 387343 Halopiger xanaduensis 1 133 0 genus 2256 1 0 133 Natronobacterium gregoryi 1 species 44930 0 177 1 2 Natronococcus 29287 1 genus 0 176 1 Natronococcus occultus 29288 species 385 1 0 203193 1 genus 2 Halobiforma 0 384 Halobiforma lacisalsi 1 species 229731 7760 0 clade 2283794 42 4019 0 183939 class 18 0 1 4019 Methanococcales 18 order 3 2182 10 Methanocaldococcaceae 196117 family 4 0 1 1648 2 Methanotorris 196119 genus 2 0 1 241 1 Methanotorris igneus 2189 species 0 239 7 Methanocaldococcus 196118 genus 20 0 1 1403 239 0 no rank 2641196 1 Methanocaldococcus sp. FS406-22 1 species 644281 0 239 1 Methanocaldococcus bathoardescens 1301915 species 0 236 1 Methanocaldococcus jannaschii 2190 species 0 244 0 227 Methanocaldococcus fervens 1 species 83171 0 149 1 Methanocaldococcus infernus 67760 species 1 Methanocaldococcus vulcanius 73913 species 0 288 7 Methanococcaceae 2183 family 5 0 1 2368 0 2145 1 5 Methanococcus 2184 8 genus species 2188 Methanococcus voltae 1 648 0 species 2187 Methanococcus vannielii 1 238 0 0 1014 Methanococcus maripaludis 1 species 39152 0 237 1 Methanococcus aeolicus 42879 species 155862 genus 1 218 0 218 0 species 155863 Methanothermococcus okinawensis 1 183925 class 5 24 Methanobacteria 1 3741 0 Methanobacteriales 23 2 order 2158 0 3736 1 0 230 1 family 2178 0 230 1 2179 genus 230 0 species 2180 Methanothermus fervidus 1 2159 family 21 3504 0 1795 1 0 2172 2 genus 7 Methanobrevibacter 308 0 230361 species 1 Methanobrevibacter millerae 430 0 species 294671 Methanobrevibacter olleyae 1 2 2638681 no rank 0 368 species 1609968 Methanobrevibacter sp. YE315 1 177 0 0 191 Methanobrevibacter sp. AbM4 1 species 224719 83816 species 1 Methanobrevibacter ruminantium 296 0 2173 species 1 Methanobrevibacter smithii 391 0 2160 6 genus 8 Methanobacterium 1200 1 0 196 0 species 2162 Methanobacterium formicicum 1 317 0 877455 species 1 Methanobacterium lacus 122 0 species 59277 Methanobacterium subterraneum 1 1 Methanobacterium congolense 118062 species 0 134 0 209 1 Methanobacterium paludis 868131 species 2627676 no rank 2 216 0 0 112 Methanobacterium sp. MZ-A1 1 species 1911685 species 1379702 Methanobacterium sp. MB1 1 104 0 349 0 2316 genus 1 0 349 1 Methanosphaera stadtmanae 2317 species Methanothermobacter 5 3 genus 145260 0 160 1 145263 species 1 Methanothermobacter marburgensis 56 0 35 0 species 145261 Methanothermobacter wolfeii 1 0 40 1 2631116 no rank 40 0 species 866790 Methanothermobacter sp. CaT2 1 145262 species 1 Methanothermobacter thermautotrophicus 26 0 clade 2283796 22 1853 0 19 class 183967 0 1644 order 2 2301 Thermoplasmatales 14 1 865 0 0 110 1 no rank 1919231 110 0 species 1054217 Thermoplasmatales archaeon BRNA1 1 0 245 1 3 Cuniculiplasmataceae 1747776 7 family genus 9 1747777 Cuniculiplasma 2 1 238 0 0 229 1 Cuniculiplasma divulgatum 1673428 species 0 222 3 90142 family 3 Ferroplasma 74968 4 genus 0 222 1 108 0 97393 species 1 Ferroplasma acidarmanus 0 110 1 Ferroplasma acidiphilum 74969 species 0 173 1 4 Thermoplasmataceae 46659 1 family 0 172 1 3 Thermoplasma 2302 6 genus 93 0 50339 species 1 Thermoplasma volcanium 73 0 2303 species 1 Thermoplasma acidophilum 0 113 2 46630 family genus 1 46631 Picrophilus 2 1 113 0 0 112 1 Picrophilus torridus 82076 species 673 0 order 1235850 4 6 family 1577788 Methanomassiliicoccaceae 3 560 1 0 0 436 1 1080709 genus Candidatus Methanomassiliicoccus intestinalis 1 species 1406512 0 436 1 1607807 genus 0 118 118 0 1577791 species 1 Candidatus Methanoplasma termitum family 2517203 1 113 0 1 genus 1291539 0 113 113 0 1291540 species 1 Candidatus Methanomethylophilus alvus 0 106 1 no rank 1234666 106 0 species 1495144 methanogenic archaeon ISO4-H5 1 3 clade 1803510 0 209 5 genus 379546 Aciduliprofundum 3 209 1 0 114 0 species 379547 Aciduliprofundum boonei 1 0 90 1 no rank 2633939 1 Aciduliprofundum sp. MAR08-339 673860 species 0 90 444 0 183980 class 10 10 order 2231 0 444 1 444 0 2232 family 5 10 Archaeoglobaceae 282 1 0 2233 4 genus 5 Archaeoglobus 58290 species 1 Archaeoglobus veneficus 56 0 Archaeoglobus sulfaticallidus 1 species 1316941 0 68 82 0 84156 species 1 Archaeoglobus profundus 1 Archaeoglobus fulgidus 2234 species 0 72 genus 54260 1 79 0 Ferroglobus placidus 1 species 54261 0 79 78 1 0 1 genus 190818 Geoglobus 3 565033 species 1 Geoglobus acetivorans 41 0 0 36 Geoglobus ahangari 1 species 113653 1 clade 1783276 0 37 37 0 1801631 phylum 1 37 0 2490204 genus 1 1 Candidatus Micrarchaeota archaeon Mia14 1920749 species 0 37 name 0 1 0