members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4585 31 9061 2562507 0 name 0 1 2 1 4274 22 Bacteria superkingdom 0 2523203 9 508458 0 phylum 383 2 1 9 649775 383 0 class Synergistia 381 Synergistales order 0 5 649776 1 8 376 Synergistaceae family 0 1 649777 1 7 0 genus 88 1 508459 1197717 1 Cloacibacillus porcorum species 0 88 genus 0 42 49894 1 97477 1 species Acetomicrobium mobile 0 42 1 336260 58 0 genus 58 species Thermovirga lienii 0 336261 1 83 0 genus 1 81461 1 81462 0 Thermanaerovibrio acidaminovorans species 83 104 0 Aminobacterium genus 2 1 2 81466 species Aminobacterium colombiense 0 102 81468 1 2 2323 0 no rank 259 259 0 clade 2 1783234 225 clade 0 95901 1 225 0 class 1 2497643 order 0 225 2497644 1 225 0 family 1 2497645 1 1551504 225 0 genus species Candidatus Babela massiliensis 0 225 673862 1 34 0 phylum 1 95818 1 1895827 34 0 no rank 2056494 1 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 34 883 0 phylum 7 200940 4 7 1 67799 883 0 Thermodesulfobacteria class 6 188710 0 order 879 879 Thermodesulfobacteriaceae family 0 2 188711 6 1 136 genus 0 444090 1 0 Caldimicrobium thiodismutans species 136 1 1653476 241192 1 genus 0 153 171695 1 153 species Thermodesulfatator indicus 0 1740 3 1 1 Thermodesulfobacterium genus 0 588 1295609 1 376 Thermodesulfobacterium geofontis species 0 1 1741 211 0 species Thermodesulfobacterium commune clade 0 11814 1783257 85 2 74201 1 26 3564 Verrucomicrobia phylum 0 0 class Verrucomicrobiae 315 6 1 203494 4 311 0 order Verrucomicrobiales 3 5 1 48461 4 1 1647988 3 0 family Akkermansiaceae 308 4 3 1 239934 305 0 genus Akkermansia 239935 1 Akkermansia muciniphila species 0 144 Akkermansia glycaniphila species 0 157 1679444 1 0 class 281 3 1955630 281 0 order Methylacidiphilales 1 3 1 717963 family 0 280 717964 2 2 511745 280 0 genus 511746 1 species Methylacidiphilum infernorum 0 136 144 Methylacidiphilum fumariolicum species 0 591154 1 0 class 70 2 134549 Candidatus Xiphinematobacter genus 0 70 134550 1 2 2 68 no rank 0 2648876 1 1 1704307 0 Candidatus Xiphinematobacter sp. Idaho Grape species 68 417295 2 657 no rank 0 0 Verrucomicrobia bacterium IMCC26134 species 250 1 1637999 Verrucomicrobia bacterium species 0 407 2026799 1 5 414999 1 12 2239 Opitutae class 0 order Puniceicoccales 0 877 415001 4 1 5 family Puniceicoccaceae 0 872 415002 1 3 3 869 0 Coraliomargarita genus 10 2 1 442430 1 395922 859 0 Coraliomargarita akajimensis species 415000 1 7 12 Opitutales order 0 1357 1345 family Opitutaceae 0 12 134623 1 6 1 278955 0 no rank 545 1 794903 545 0 species Opitutaceae bacterium TAV5 genus Lacunisphaera 0 405 1961799 2 1 1 1 1838286 0 species Lacunisphaera limnophila 404 1 178440 1 2 383 genus Opitutus 0 382 0 species Opitutus terrae 1 107709 256845 3 phylum 0 235 class Lentisphaeria 0 235 1313211 3 1 1 3 278082 2 1 234 order Victivallales 0 1674876 1 231 no rank 0 2094242 1 Victivallales bacterium CCUG 44730 species 0 231 203682 34 phylum 0 5889 class 0 995 2517206 3 2 1127829 1 3 995 order Candidatus Brocadiales 0 993 0 Candidatus Brocadiaceae family 1 1 2 1127830 1 380738 992 0 genus Candidatus Kuenenia stuttgartiensis species 0 992 174633 1 6 203683 24 1 3933 class Planctomycetia 0 2691355 2 order 0 366 family 0 366 1914233 2 366 0 genus Gemmata 17 2 1 113 349 no rank 0 2622970 1 0 Gemmata sp. SH-PL17 species 349 1 1630693 1721 order Planctomycetales 0 57 112 1 9 24 8 1 126 1664 0 Planctomycetaceae family 1 1936111 339 0 genus 1 1891926 0 species Fuerstia marisgermanicae 339 0 Rubinisphaera genus 238 2 1 1649490 3 119 1 Rubinisphaera brasiliensis species 0 235 Planctomyces genus 0 885 118 1 3 6 no rank 0 879 2648843 2 312 0 species Planctomyces sp. SH-PL14 1 1632864 567 0 species Planctomyces sp. SH-PL62 1 1636152 0 genus 178 1 1649480 1 120 0 Planctopirus limnophila species 178 0 order 638 5 2691354 4 2691357 0 family 517 1 2 265488 3 0 Rhodopirellula genus 257 265606 1 species Rhodopirellula baltica 0 254 260 0 Pirellula genus 1 2 1 123 0 Pirellula staleyi species 259 1 125 121 family 0 2691358 1 genus 0 121 1676125 1 1331910 1 Thermogutta terrifontis species 0 121 0 order 1202 7 2691356 7 7 1 1763524 1202 0 Isosphaeraceae family 127 1 2 12 genus Isosphaera 0 350 1 128 338 0 species Isosphaera pallida 3 1763521 1 2 449 genus Paludisphaera 0 0 Paludisphaera borealis species 446 1 1387353 466152 2 1 14 Singulisphaera genus 0 396 1 466153 0 Singulisphaera acidiphila species 382 0 Phycisphaerae class 961 1 7 666505 5 2 2483366 195 0 order 195 family 0 2483367 2 2 2483368 0 genus 195 1941349 1 species Phycisphaerae bacterium ST-PulAB-D4 0 101 species Phycisphaerae bacterium L21-RPul-D3 0 94 1940790 1 1 4 666506 9 0 order Phycisphaerales 761 3 1 666507 3 0 Phycisphaeraceae family 752 749 0 Phycisphaera genus 4 2 1 666508 745 0 species Phycisphaera mikurensis 1 547188 433 phylum 0 134625 2 1921781 2 class 0 433 2 1921782 433 0 order 6 2 1 1921783 433 0 Kiritimatiellaceae family genus 0 427 1921784 1 427 species Kiritimatiella glycovorans 0 1307763 1 1693 phylum 0 204428 20 1693 class Chlamydiia 0 1 204429 20 1 1 6 1963360 1 0 Parachlamydiales order 526 312 0 family 3 92713 genus 0 186 83551 1 186 0 species Parachlamydia acanthamoebae 1 83552 0 Candidatus Protochlamydia genus 126 1 2 282132 1 1 389348 0 Candidatus Protochlamydia naegleriophila species 125 92712 1 127 family 0 1 34093 0 genus 127 83561 1 127 species Simkania negevensis 0 1 92714 86 0 family 86 genus 0 71666 1 71667 1 species Waddlia chondrophila 0 86 51291 1 13 7 Chlamydiales order 0 1166 0 family 1159 12 809 0 no rank 1159 12 1113537 11 810 1 12 1159 genus Chlamydia 0 1 1457153 0 Chlamydia gallinacea species 86 Chlamydia trachomatis species 0 73 813 1 1457141 1 Chlamydia avium species 0 82 1 83554 0 Chlamydia psittaci species 131 83557 1 Chlamydia caviae species 0 90 159 species Chlamydia pecorum 0 85991 1 0 Chlamydia abortus species 72 1 83555 1 83559 0 Chlamydia suis species 78 83560 1 92 species Chlamydia muridarum 0 1 83556 98 0 species Chlamydia felis 187 0 Chlamydia pneumoniae species 1 83558 0 clade 164 4 2498710 0 phylum 164 4 67814 4 4 1 693071 164 0 class Caldisericia 3 1 693072 1 0 order Caldisericales 160 1 693073 2 1 159 family Caldisericaceae 0 1 693074 0 genus 158 158 species Caldisericum exile 0 693075 1 0 phylum 11595 23 32066 22 23 1 203490 11595 0 Fusobacteriia class 17 22 1 203491 11573 0 Fusobacteriales order 4 10 1 1129771 2432 0 family Leptotrichiaceae 34104 1 genus 0 483 34105 1 483 species Streptobacillus moniliformis 0 1320 0 Leptotrichia genus 5 1 5 32067 353 0 Leptotrichia buccalis species 1 40542 no rank 0 962 2633022 3 1 712368 0 species Leptotrichia sp. oral taxon 498 341 350 0 species Leptotrichia sp. oral taxon 847 1 1785996 Leptotrichia sp. oral taxon 212 species 0 271 712357 1 0 genus 346 1 32068 346 0 species Sebaldella termitidis 1 826 0 genus Sneathia 279 1 2 168808 2 277 Sneathia amnii species 0 187101 1 203492 11 1 6 family Fusobacteriaceae 0 9124 8811 0 Fusobacterium genus 34 1 9 848 1 1583098 0 Fusobacterium hwasookii species 909 0 Fusobacterium gonidiaformans species 298 1 849 1 851 3888 0 Fusobacterium nucleatum species 860 1 1588 Fusobacterium periodonticum species 0 0 Fusobacterium necrophorum species 199 1 859 1 850 431 0 Fusobacterium mortiferum species species Fusobacterium varium 0 976 856 1 861 1 Fusobacterium ulcerans species 0 488 167639 1 307 genus 0 0 species Ilyobacter polytropus 307 1 167642 8 200930 1397 0 phylum 1 8 68337 10 0 Deferribacteres class 1397 Deferribacterales order 0 1387 191393 1 7 1 6 191394 1 6 1386 family Deferribacteraceae 0 545865 1 245 genus 0 245 0 species Calditerrivibrio nitroreducens 1 477976 2351 1 genus 0 415 0 Flexistipes sinusarabici species 415 1 2352 135 genus 0 117999 1 135 species Denitrovibrio acetiphilus 0 118000 1 53572 1 2 4 Deferribacter genus 0 585 1 197162 581 0 species Deferribacter desulfuricans 1783272 1608 clade 0 1680230 104 0 no rank 1 1859062 104 genus 0 262406 1 104 species Thermobaculum terrenum 0 166501 1 187377 0 Actinobacteria phylum 2 622 1 201174 no rank 0 394 1752188 4 1 1848755 78 0 Actinobacteria bacterium IMCC26077 species 1848754 1 species Actinobacteria bacterium IMCC19121 0 129 61 0 species Actinobacteria bacterium IMCC25003 1 1848255 1848756 1 species Actinobacteria bacterium IMCC26103 0 126 0 Thermoleophilia class 2220 1 5 1497346 1 1 4 588673 11 0 order Solirubrobacterales 2219 2208 family Conexibacteraceae 0 3 320583 1 3 7 191494 1 2 2205 Conexibacter genus 0 1 191495 0 species Conexibacter woesei 2198 0 class Actinobacteria 181259 1 572 1760 541 85010 1 39 17 Pseudonocardiales order 0 15708 1 38 2070 102 0 Pseudonocardiaceae family 15691 genus Pseudonocardia 0 4023 1847 1 8 49 0 no rank 3370 6 2619320 1641402 1 species Pseudonocardia sp. HH130629-09 0 491 1096856 1 557 species Pseudonocardia sp. EC080619-01 0 1 445576 0 Pseudonocardia sp. AL041005-10 species 633 1690815 1 583 species Pseudonocardia sp. HH130630-07 0 495 Pseudonocardia sp. EC080625-04 species 0 1096868 1 1 1688404 611 0 species Pseudonocardia sp. EC080610-09 604 0 species Pseudonocardia dioxanivorans 1 240495 557 genus 0 674734 1 557 no rank 0 2636053 1 557 Alloactinosynnema sp. L-07 species 0 1653480 1 557 0 Kutzneria genus 3 1 2 43356 1 43357 0 Kutzneria albida species 554 3 142577 2 1 315 genus Prauserella 0 312 0 Prauserella marina species 1 530584 1 2029 2 1 616 genus Kibdelosporangium 0 860235 1 Kibdelosporangium phytohabitans species 0 615 65496 1 6 15 genus Actinoalloteichus 0 2518 1470176 1 559 species Actinoalloteichus hoggarensis 0 939 0 no rank 2 2644606 1 1612551 0 Actinoalloteichus sp. GBA129-24 species 497 species Actinoalloteichus sp. AHMU CJ021 0 442 2072503 1 1612552 1 Actinoalloteichus sp. ADI127-7 species 0 743 0 Actinoalloteichus hymeniacidonis species 262 1 340345 0 Saccharopolyspora genus 525 2 1 1835 1 0 Saccharopolyspora erythraea species 524 1 1836 324 genus 0 1851 1 1852 1 324 species Saccharomonospora viridis 0 22 1813 1 7 3519 Amycolatopsis genus 0 208439 1 498 species Amycolatopsis japonica 0 2 2618356 0 no rank 1054 1 1911175 0 Amycolatopsis sp. BJA-103 species 501 553 Amycolatopsis sp. AA4 species 0 1896961 1 453 Amycolatopsis methanolica species 0 1814 1 868 0 Amycolatopsis orientalis species 1 31958 33910 1 624 Amycolatopsis mediterranei species 0 593 genus 0 165301 1 1586287 1 593 Lentzea guizhouensis species 0 0 Saccharothrix genus 648 1 2 2071 1 1 103731 0 species Saccharothrix espanaensis 647 0 genus Actinosynnema 1394 3 1 40566 18 666 Actinosynnema pretiosum species 0 42197 1 40567 1 Actinosynnema mirum species 0 710 6755 Micromonosporales order 0 9 85008 1 20 Micromonosporaceae family 0 6746 28056 19 1 44 673534 4 1 3 genus Plantactinospora 0 1626 3 2631981 1623 0 no rank 0 species Plantactinospora sp. BB1 599 1 2071627 0 Plantactinospora sp. KBS50 species 497 1 2024580 1 2108470 0 species Plantactinospora sp. BC1 527 1 84593 0 genus Verrucosispora 3 1865 6 1 29 Actinoplanes genus 0 2950 3 2626549 1790 0 no rank Actinoplanes sp. SE50/110 species 0 590 134676 1 1 649831 0 species Actinoplanes sp. N902-109 610 1 2033844 0 Actinoplanes sp. SE50 species 590 594 Actinoplanes missouriensis species 0 1866 1 537 species Actinoplanes friuliensis 0 196914 1 1493 Micromonospora genus 0 8 1873 4 1 547 Micromonospora aurantiaca species 0 47850 1 1 2617518 516 0 no rank 0 Micromonospora sp. L5 species 516 1 648999 1003110 1 422 species Verrucosispora maris 0 0 Salinispora genus 630 3 1 168694 2 1 168697 299 0 Salinispora arenicola species 1 168695 329 0 species Salinispora tropica 7 2039638 12 1 1292 Candidatus Nanopelagicales order 0 11 2162846 1285 0 family 670 0 genus Candidatus Planktophila 5 7 1 622681 129 0 Candidatus Planktophila lacus species 1 1884913 1884904 1 50 Candidatus Planktophila sulfonica species 0 573600 1 99 species Candidatus Planktophila limnetica 0 Candidatus Planktophila dulcis species 0 147 1884914 1 0 Candidatus Planktophila vernalis species 104 1 1884907 1 1884905 136 0 species Candidatus Planktophila versatilis 615 Candidatus Nanopelagicus genus 0 7 2039639 4 1 236 0 species Candidatus Nanopelagicus abundans 1 1884916 0 species Candidatus Nanopelagicus limnes 191 1 1884634 1 1884915 181 0 species Candidatus Nanopelagicus hibericus 4 1 15 85012 3777 0 order Streptosporangiales 11 5 1 2004 1943 0 family Streptosporangiaceae genus Streptosporangium 0 832 2000 1 2 2 Streptosporangium roseum species 0 830 2001 1 0 genus Nonomuraea 1100 1 2 83681 4 0 no rank 1096 1 2593643 1 1909395 0 species Nonomuraea sp. ATCC 55076 1096 3 1 2012 3 0 family Thermomonosporaceae 382 379 Thermomonospora genus 0 2 2019 2 1 0 species Thermomonospora curvata 377 1 2020 83676 1 6 5 Nocardiopsaceae family 0 1448 0 Nocardiopsis genus 1317 1 4 2013 19 0 species Nocardiopsis alba 273 1 53437 species Nocardiopsis dassonvillei 0 616 2014 1 1 280236 0 Nocardiopsis gilva species 409 83677 1 126 genus 0 2021 1 Thermobifida fusca species 0 126 1643682 5 1276 order 0 1276 0 family Geodermatophilaceae 12 5 1 85030 408 genus Blastococcus 0 4 38501 1 2 404 0 Blastococcus saxobsidens species 1 138336 1860 1 genus 0 438 438 Geodermatophilus obscurus species 0 1861 1 88138 1 418 genus 0 418 0 species Modestobacter marinus 1 477641 231 Actinopolysporales order 0 2 622450 1 3 622451 2 family 0 229 5 2 1 1849 229 0 genus Actinopolyspora 1 414996 0 Actinopolyspora erythraea species 224 0 order Kineosporiales 569 1 4 622452 3 Kineosporiaceae family 0 566 83778 1 3 5 genus Kineococcus 0 561 33981 2 1 4 557 Kineococcus radiotolerans species 0 131568 1 1 1 4 1643684 398 0 order Nakamurellales Nakamurellaceae family 0 397 85031 3 1 8 genus Nakamurella 0 389 53460 1 2 1 388 0 Nakamurella multipartita species 1 53461 1643818 2 288 no rank 0 1 147067 2 1 288 genus Thermobispora 0 1 2006 287 0 Thermobispora bispora species 27178 Micrococcales order 0 129 85006 1 135 0 family Microbacteriaceae 10180 1 46 85023 58 1481 0 genus Clavibacter 23 1 6 1573 0 species Clavibacter michiganensis 1458 5 1 28447 328 279 0 Clavibacter capsici subspecies 1 1874630 33014 1 subspecies Clavibacter insidiosus 0 256 31964 1 Clavibacter sepedonicus subspecies 0 346 249 0 subspecies Clavibacter nebraskensis 1 31963 33886 3 1 4 genus Rathayibacter 0 570 0 Rathayibacter tritici species 265 1 33888 301 species Rathayibacter toxicus 0 145458 1 0 genus Microbacterium 3722 1 14 33882 30 1 36805 0 species Microbacterium aurum 289 162426 1 species Microbacterium hominis 0 282 2033 1 288 Microbacterium testaceum species 0 2609290 8 2372 no rank 0 189 Microbacterium sp. str. 'China' species 0 2103230 1 1 1696072 0 species Microbacterium sp. CGR1 199 1795053 1 230 species Microbacterium sp. PAMC 28756 0 0 species Microbacterium sp. 1.5R 219 1 1916917 1 1714373 0 Microbacterium sp. No. 7 species 512 1 367477 0 Microbacterium sp. XT11 species 254 1906742 1 species Microbacterium sp. BH-3-3-3 0 523 species Microbacterium sp. TPU 3598 0 246 1938334 1 species Microbacterium chocolatum 0 213 84292 1 300019 1 248 species Microbacterium paludicola 0 944 genus 0 447237 1 2626248 1 944 no rank 0 species Frondihabitans sp. PAMC 28766 0 944 1795630 1 3 1 4 2034 931 0 Curtobacterium genus 1 69373 0 species Curtobacterium pusillum 286 no rank 0 642 257496 2 1905847 1 species Curtobacterium sp. BH-2-1-1 0 303 species Curtobacterium sp. MR_MD2014 0 339 1561023 1 1 2 1759331 1 0 Cnuibacter genus 320 1 1619308 319 0 Cnuibacter physcomitrellae species 81 genus 0 1434032 1 1 1159327 81 0 Pontimonas salivibrio species 1 518733 239 0 genus 412690 1 Microterricola viridarii species 0 239 1 337004 178 0 genus 178 Microcella alkaliphila species 0 279828 1 genus Aurantimicrobium 0 74 1705353 2 1 1 73 0 species Aurantimicrobium minutum 1 708131 genus Agromyces 0 412 33877 2 1 2 1 453304 410 0 Agromyces aureus species no rank 0 141 1655488 3 3 1655489 141 0 clade 141 Rhodoluna genus 0 2 529883 3 1 1 535712 65 0 Candidatus Rhodoluna planktonica species 529884 1 species Rhodoluna lacicola 0 74 2 3 1 69578 476 0 Cryobacterium genus 1 2649013 241 0 no rank 0 species Cryobacterium sp. LW097 241 1 1978566 233 species Cryobacterium arcticum 0 670052 1 553 Leifsonia genus 0 1 110932 1 2 0 Leifsonia xyli species 552 1 1575 0 family 61 2 85022 1 1 2 43673 61 0 Jonesia genus Jonesia denitrificans species 0 60 43674 1 family 0 479 125316 2 479 genus Beutenbergia 0 4 84756 1 2 0 species Beutenbergia cavernae 475 1 84757 29 36 1 1268 6299 0 family Micrococcaceae 136 genus 0 2078575 1 1618207 1 species Arthrobacter sp. IHBB 11108 0 136 32207 2 genus 0 149 37 species Rothia dentocariosa 0 2047 1 1 43675 0 Rothia mucilaginosa species 112 316 0 genus 1 596707 37927 1 Sinomonas atrocyanea species 0 316 1269 2 1 1 Micrococcus genus 0 263 0 Micrococcus luteus species 262 1 1270 1 2 1 1742989 201 0 Glutamicibacter genus 0 Glutamicibacter arilaitensis species 200 1 256701 720 0 Kocuria genus 5 4 1 57493 1 446860 0 species Kocuria flava 295 71999 1 226 species Kocuria palustris 0 72000 1 species Kocuria rhizophila 0 194 4 1742993 4 1 662 Pseudarthrobacter genus 0 0 species Pseudarthrobacter sulfonivorans 216 1 121292 361575 1 Pseudarthrobacter phenanthrenivorans species 0 249 0 species Pseudarthrobacter chlorophenolicus 193 1 85085 Neomicrococcus genus 0 103 1868332 1 2 1 0 species Neomicrococcus aestuarii 102 1 556325 1 1742992 0 genus 138 138 species Paenarthrobacter aurescens 0 43663 1 0 genus 74 1 1645 74 0 species Renibacterium salmoninarum 1 1646 3508 genus Arthrobacter 0 30 1663 15 1 447 0 species Arthrobacter alpinus 1 656366 Arthrobacter crystallopoietes species 0 232 37928 1 12 235627 2799 0 no rank 1 2079227 0 species Arthrobacter sp. PGP41 607 1 1771959 83 0 species Arthrobacter sp. ATCC 21022 1806905 1 121 species Arthrobacter sp. ZXY-2 0 1118963 1 species Arthrobacter sp. Rue61a 0 110 2020486 1 species Arthrobacter sp. YN 0 162 260 0 species Arthrobacter sp. QXT-31 1 1357915 170 0 Arthrobacter sp. YC-RL1 species 1 1652545 1494608 1 257 species Arthrobacter sp. PAMC 25486 0 266 species Arthrobacter sp. U41 0 1849032 1 321 species Arthrobacter sp. ERGS1:01 0 1704044 1 196 0 species Arthrobacter sp. LS16 1 1690248 0 species Arthrobacter sp. FB24 246 1 290399 2 85018 0 family 152 152 genus Dermatophilus 0 1 1862 2 1 species Dermatophilus congolensis 0 151 1863 1 1 577468 50 0 no rank 0 genus 50 1 2038 1 2039 50 0 Tropheryma whipplei species 0 Dermacoccaceae family 789 7 1 145357 10 0 Kytococcus genus 190 1 2 57499 2 188 species Kytococcus sedentarius 0 1276 1 4 57495 2 1 318 genus Dermacoccus 0 1274 1 species Dermacoccus nishinomiyaensis 0 314 Luteipulveratus genus 0 271 745364 1 2 5 266 Luteipulveratus mongoliensis species 0 571913 1 0 family 404 2 145360 60919 1 2 1 Sanguibacter genus 0 404 60920 1 species Sanguibacter keddieii 0 403 2 85016 1 6 1589 family Cellulomonadaceae 0 0 genus Cellulomonas 1587 1 5 1707 11 1708 1 413 species Cellulomonas fimi 0 11 1 306 Cellulomonas gilvus species 0 1 2620175 367 0 no rank 1 2003551 0 Cellulomonas sp. PSBB021 species 367 1711 1 490 Cellulomonas flavigena species 0 85021 8 1 11 family Intrasporangiaceae 0 1340 Arsenicicoccus genus 0 359 267408 1 2 7 352 no rank 0 2663846 1 1658671 1 Arsenicicoccus sp. oral taxon 190 species 0 352 1 53357 0 genus 324 0 Intrasporangium calvum species 324 1 53358 0 Serinicoccus genus 310 1 2 265976 3 1758689 1 species Serinicoccus sp. JLT9 0 307 336 genus Janibacter 0 6 53457 2 1 857417 1 330 species Janibacter indicus 0 10 1 85020 4 0 family Dermabacteraceae 2873 36739 1 genus 0 88 1630135 1 species Dermabacter vaginalis 0 88 2652 0 genus Brachybacterium 19 1 6 43668 43669 1 322 Brachybacterium faecium species 0 0 species Brachybacterium sp. VM2412 1356 1 2017484 1 1331682 295 0 species Brachybacterium ginsengisoli 349 0 no rank 1 2623841 349 0 Brachybacterium sp. P6-10-X1 species 1 1903186 311 Brachybacterium sp. VR2415 species 0 2017485 1 Devriesea genus 0 129 472568 2 1 3 472569 1 126 Devriesea agamarum species 0 8 85019 3 1 393 Brevibacteriaceae family 0 2 1 1696 8 0 Brevibacterium genus 385 species Brevibacterium linens 0 377 1703 1 9 85017 9 1 2440 Promicromonosporaceae family 0 254250 1 3 11 genus Isoptericola 0 928 398 0 species Isoptericola variabilis 1 139208 1 372663 0 Isoptericola dokdonensis species 519 3 186188 2 1 440 Xylanimonas genus 0 186189 1 Xylanimonas cellulosilytica species 0 437 157920 1 3 4 genus Cellulosimicrobium 0 1063 0 species Cellulosimicrobium cellulans 511 1 1710 1 2624466 0 no rank 548 548 0 Cellulosimicrobium sp. TH-20 species 1 1980001 3353 0 order Frankiales 28 1 7 85013 14 6 1 74712 3325 0 Frankiaceae family genus Frankia 0 3311 1854 5 1 23 106370 1 Frankia casuarinae species 0 608 1 298654 0 Frankia inefficax species 589 1461 species Frankia alni 0 1859 1 630 0 no rank 1 2632575 Frankia sp. EAN1pec species 0 630 298653 1 0 order Corynebacteriales 39095 160 1 85007 163 84 0 no rank 2 697024 84 genus Lawsonella 0 1 1847725 1 2 0 species Lawsonella clevelandensis 83 1 1528099 7 85026 1 9 1929 family Gordoniaceae 0 0 Gordonia genus 1922 1 8 2053 16 293 0 species Gordonia terrae 1 2055 1 1136941 239 0 species Gordonia phthalatica 2657482 2 470 no rank 0 2059875 1 192 Gordonia sp. YC-JH1 species 0 278 species Gordonia sp. KTR9 0 337191 1 317 Gordonia bronchialis species 0 2054 1 species Gordonia iterans 0 275 1004901 1 1 84595 312 0 Gordonia polyisoprenivorans species 530 family 0 85029 3 530 Dietzia genus 0 7 37914 3 1 0 Dietzia timorensis species 165 1 499555 1 2617939 358 0 no rank 712270 1 358 species Dietzia sp. oral taxon 368 0 family Segniliparaceae 0 170 316606 2 1 2 286801 1 genus 0 168 286802 1 168 Segniliparus rotundus species 0 22 52 1 1653 7339 0 family Corynebacteriaceae 1716 1 51 83 genus Corynebacterium 0 7317 1 43770 197 0 species Corynebacterium striatum 0 Corynebacterium mustelae species 77 1 571915 Corynebacterium sphenisci species 0 250 191493 1 0 Corynebacterium camporealensis species 75 1 161896 60 0 species Corynebacterium ammoniagenes 1 1697 38305 1 species Corynebacterium vitaeruminis 0 241 195 Corynebacterium marinum species 0 349751 1 1 258224 0 Corynebacterium resistens species 73 1 35755 0 Corynebacterium kutscheri species 68 169 0 species Corynebacterium jeikeium 1 38289 species Corynebacterium urealyticum 0 100 43771 1 1705 1 92 species Corynebacterium stationis 0 1 1717 135 0 Corynebacterium diphtheriae species 1 160386 80 0 species Corynebacterium casei Corynebacterium epidermidicanis species 0 53 1050174 1 0 species Corynebacterium singulare 95 1 161899 1721 1 Corynebacterium callunae species 0 100 Corynebacterium kroppenstedtii species 0 49 161879 1 112 species Corynebacterium phocae 0 161895 1 1 92706 0 species [Brevibacterium] flavum 119 144 Corynebacterium falsenii species 0 108486 1 species Corynebacterium efficiens 0 114 152794 1 1727 1 236 species Corynebacterium variabile 0 0 species Corynebacterium glutamicum 304 1 1718 Corynebacterium deserti species 0 128 1408191 1 1 1652495 70 0 Corynebacterium crudilactis species 1 156978 107 0 species Corynebacterium imitans species Corynebacterium aurimucosum 0 76 169292 1 239 0 species Corynebacterium frankenforstense 1 1230998 1404244 1 134 species Corynebacterium glyciniphilum 0 Corynebacterium flavescens species 0 71 28028 1 1 203263 0 Corynebacterium aquilae species 186 0 Corynebacterium maris species 167 1 575200 1 146827 0 Corynebacterium simulans species 111 225326 1 202 Corynebacterium halotolerans species 0 1 187491 142 0 species Corynebacterium glaucum 105 0 Corynebacterium ureicelerivorans species 1 401472 289 Corynebacterium humireducens species 0 1223514 1 42817 1 101 Corynebacterium argentoratense species 0 no rank 0 207 2624378 2 64 species Corynebacterium sp. ATCC 6931 0 1487956 1 0 Corynebacterium sp. NML98-0116 species 143 1 702967 1 65058 0 species Corynebacterium ulcerans 84 1 136857 129 0 species Corynebacterium testudinoris 0 species Corynebacterium atypicum 76 1 191610 1231000 1 77 species Corynebacterium lactis 0 134 species Corynebacterium cystitidis 0 35757 1 1 1121358 0 species Corynebacterium doosanense 138 1 1719 84 0 species Corynebacterium pseudotuberculosis species Corynebacterium terpenotabidum 0 181 89154 1 858 0 species Corynebacterium uterequi 1 1072256 10707 0 family Nocardiaceae 40 1 31 85025 3374 0 Nocardia genus 42 7 1 1817 37326 1 921 species Nocardia brasiliensis 0 37332 1 Nocardia seriolae species 0 352 1 37329 566 0 Nocardia farcinica species 455432 1 466 Nocardia terpenica species 0 135487 1 638 Nocardia cyriacigeorgica species 0 0 species Nocardia nova 389 1 37330 7293 0 genus Rhodococcus 157 1 23 1827 1829 1 Rhodococcus rhodochrous species 0 290 1 1833 0 Rhodococcus erythropolis species 415 363 Rhodococcus pyridinivorans species 0 103816 1 191292 1 427 Rhodococcus aetherivorans species 0 210 Rhodococcus qingshengii species 0 334542 1 1830 1 Rhodococcus ruber species 0 467 1 132919 0 Rhodococcus jostii species 416 0 Rhodococcus fascians species 271 1 1828 192944 12 no rank 0 2893 1 1045808 0 Rhodococcus sp. YL-1 species 175 1727214 1 187 species Rhodococcus sp. H-CA8f 0 144 0 Rhodococcus sp. WMMA185 species 1 679318 Rhodococcus sp. PBTS 2 species 0 155 1653479 1 0 species Rhodococcus sp. 008 158 1 1723645 1805827 1 429 species Rhodococcus sp. MTM3W5.2 0 1 1570939 0 species Rhodococcus sp. 2G 262 258 species Rhodococcus sp. PBTS 1 0 1653478 1 0 Rhodococcus sp. B7740 species 217 1 1564114 267 0 Rhodococcus sp. p52 species 1 935199 133 species Rhodococcus sp. BH4 0 1807790 1 1033922 1 508 Rhodococcus sp. WB1 species 0 0 Rhodococcus hoagii species 295 1 43767 1089 0 Rhodococcus opacus species 1 37919 739 Tsukamurellaceae family 0 6 85028 4 1 0 Tsukamurella genus 733 3 1 2060 4 0 species Tsukamurella paurometabola 268 1 2061 1 57704 0 Tsukamurella tyrosinosolvens species 461 Mycobacteriaceae family 0 17434 1762 56 1 38 0 genus 151 1 697025 species Hoyosella subflava 0 151 639313 1 661 0 genus 2 1073531 Mycobacterium sinense species 0 351 875328 1 0 Mycobacterium terrae species 310 1 1788 genus Mycobacterium 0 9534 1763 1 34 433 120793 8 species group 0 2298 Mycobacterium marseillense species 0 225 701042 1 339268 1 313 species Mycobacterium colombiense 0 1138383 1 Mycobacterium paraintracellulare species 0 91 934 0 Mycobacterium avium species 1 1764 4 1 1767 149 0 Mycobacterium intracellulare species 735 350 Mycobacterium chimaera subspecies 0 222805 1 1 1203599 0 Mycobacterium yongonense subspecies 146 35617 1 90 Mycobacterium indicus pranii subspecies 0 1 261524 323 0 species Mycobacterium liflandii 385 0 species Mycobacterium dioxanotrophicus 1 482462 0 species group 277 1 2249310 277 0 species Mycobacterium shigaense 1 722731 13 2642494 0 no rank 3558 0 Mycobacterium sp. EPa45 species 238 1 1545728 1 1273687 230 0 Mycobacterium sp. VKM Ac-1817D species 290 Mycobacterium sp. WY10 species 0 1920667 1 164756 1 species Mycobacterium sp. MCS 0 288 0 species Mycobacterium sp. JS623 409 1 212767 1 1168287 95 0 species Mycobacterium sp. MOTT36Y species Mycobacterium sp. PYR15 0 328 2051552 1 310 Mycobacterium sp. JLS species 0 164757 1 species Mycobacterium sp. QIA-37 0 142 1561223 1 0 Mycobacterium sp. YC-RL4 species 309 1 1682113 1 189918 311 0 Mycobacterium sp. KMS species 0 Mycobacterium sp. djl-10 species 372 1 1879023 1570328 1 236 species Mycobacterium sp. NRRL B-3805 0 563 species Mycobacterium marinum 0 1781 1 312 0 Mycobacterium kansasii species 1 1768 1 29311 0 Mycobacterium haemophilum species 158 0 species group 882 4 77643 156 species Mycobacterium canettii 0 78331 1 species Mycobacterium tuberculosis 0 726 1773 3 1 271 1 33894 0 biotype Mycobacterium africanum 219 1 1765 236 0 biotype Mycobacterium bovis 1 1769 0 species Mycobacterium leprae 50 Mycobacterium ulcerans species 0 295 1809 1 1866885 13 genus 0 4535 1 1800 0 species Mycobacterium chubuense 373 1772 1 species Mycobacterium smegmatis 0 435 354 Mycobacterium goodii species 0 134601 1 1791 1 416 Mycobacterium aurum species 0 257 species Mycobacterium thermoresistibile 0 1797 1 0 species Mycobacterium rhodesiae 259 1 36814 1 758802 273 0 Mycobacterium litorale species species Mycobacterium fortuitum 0 232 1766 1 1795 1 236 Mycobacterium neoaurum species 0 1 1771 0 species Mycobacterium phlei 405 species Mycobacterium gilvum 0 518 1804 1 110539 1 365 Mycobacterium vanbaalenii species 0 1810 1 412 species Mycobacterium vaccae 0 2515 genus 0 670516 5 158 0 species Mycobacterium chelonae 1 1774 83262 1 Mycobacterium immunogenum species 0 203 0 species Mycobacterium abscessus 1848 1 36809 161 Mycobacterium saopaulense species 0 1578165 1 145 species Mycobacterium stephanolepidis 0 1520670 1 3026 0 Bifidobacteriales order 8 1 26 85004 16 31953 25 1 3018 family Bifidobacteriaceae 0 1 19 1678 40 0 genus Bifidobacterium 2600 2 1 1686 46 0 species Bifidobacterium catenulatum 150 630129 1 Bifidobacterium kashiwanohense subspecies 0 104 1684 1 67 Bifidobacterium asteroides species 0 51 0 species Bifidobacterium coryneforme 1 1687 Bifidobacterium pseudolongum species 0 229 1694 1 species Bifidobacterium breve 0 233 1685 1 1 1681 0 Bifidobacterium bifidum species 127 1691 1 Bifidobacterium indicum species 0 64 1 33905 74 0 Bifidobacterium thermophilum species 74 0 Bifidobacterium pseudocatenulatum species 1 28026 0 species Bifidobacterium actinocoloniiforme 224 1 638619 Bifidobacterium animalis species 0 136 28025 1 1683 1 species Bifidobacterium angulatum 0 119 1 35760 0 species Bifidobacterium choerinum 210 0 species Bifidobacterium longum 370 1 216816 1680 1 Bifidobacterium adolescentis species 0 96 226 0 species Bifidobacterium scardovii 1 158787 0 species Bifidobacterium dentium 110 1 1689 0 genus 72 1 196082 0 species Parascardovia denticolens 72 1 78258 247 0 Gardnerella genus 2 2 1 2701 2702 1 Gardnerella vaginalis species 0 245 196081 2 1 4 genus Scardovia 0 83 79 0 species Scardovia inopinata 1 78259 112 82 1 85011 67638 0 Streptomycetales order 2062 81 1 163 family Streptomycetaceae 0 67526 62892 genus Streptomyces 0 717 1883 75 1 1912 1 1864 species Streptomyces hygroscopicus 0 193462 1 Streptomyces niveus species 0 635 1969 1 species Streptomyces chartreusis 0 500 47763 1 1769 Streptomyces lydicus species 0 1 1907 0 species Streptomyces glaucescens 729 1916 1 684 Streptomyces lividans species 0 1 1888 0 Streptomyces albus species 1751 1940 1 579 species Streptomyces albireticuli 0 0 Streptomyces malaysiensis species 830 1 92644 68192 1 423 Streptomyces cyaneogriseus species 0 17110 0 no rank 24 2593676 1066 species Streptomyces sp. M56 0 1495638 1 1 1262452 0 species Streptomyces sp. 769 785 987 0 Streptomyces sp. P3 species 1 2135430 548 species Streptomyces sp. S8 0 1837283 1 1841249 1 Streptomyces sp. RTd22 species 0 741 1 1964449 0 species Streptomyces sp. 3211 996 1561022 1 559 Streptomyces sp. CCM_MD2014 species 0 206662 1 807 Streptomyces sp. FR-008 species 0 1984801 1 712 Streptomyces sp. CLI2509 species 0 1 2059884 0 Streptomyces sp. CMB-StM0423 species 785 444 0 species Streptomyces sp. SirexAA-E 1 862751 1 1849967 1018 0 Streptomyces sp. SAT1 species Streptomyces sp. WAC00288 species 0 580 2094021 1 798 0 species Streptomyces sp. Sge12 1 1972846 species Streptomyces sp. MOE7 0 607 1961713 1 0 Streptomyces sp. fd1-xmd species 724 1 1812480 Streptomyces sp. PAMC 26508 species 0 433 1265601 1 1 465541 746 0 Streptomyces sp. Mg1 species 1 1661694 651 0 Streptomyces sp. Tue 6075 species 1 1649184 0 species Streptomyces sp. CFMR 7 609 Streptomyces sp. 4F species 0 530 1751294 1 1 1725411 773 0 Streptomyces sp. CdTB01 species 0 species Streptomyces sp. CNQ-509 647 1 444103 1 234612 564 0 species Streptomyces sp. TN58 species Streptomyces xinghaiensis 0 648 1038928 1 601 0 Streptomyces sp. S10(2016) species 1 1783515 807 species Streptomyces avermitilis 0 33903 1 428 0 Streptomyces peucetius species 1 1950 67267 1 782 species Streptomyces alboflavus 0 1971 1 813 Streptomyces noursei species 0 1926 1 724 species Streptomyces reticuli 0 1477431 2 species group 0 3129 2527 0 species Streptomyces coelicolor 1 1902 602 0 species Streptomyces sampsonii 1 42239 1 1935 505 0 Streptomyces violaceoruber species 0 Streptomyces scabiei species 950 1 1930 662 species Streptomyces collinus 0 42684 1 38300 1 531 Streptomyces pristinaespiralis species 0 586 Streptomyces fulvissimus species 0 68202 1 1456 species Streptomyces pactum 0 68249 1 557 0 species Streptomyces puniciscabiei 1 164348 846 0 species Streptomyces ambofaciens 1 1889 1169025 1 species Streptomyces pratensis 0 484 520 species Streptomyces pluripotens 0 1355015 1 285473 1 Streptomyces rubrolavendulae species 0 589 1437453 1 species Streptomyces leeuwenhoekii 0 529 1006 species Streptomyces formicae 0 1616117 1 1 1901 593 0 Streptomyces clavuligerus species 1 379067 0 species Streptomyces bingchenggensis 1171 1 68280 0 species Streptomyces violaceusniger 782 0 species Streptomyces xiamenensis 436 1 408015 553510 1 840 species Streptomyces gilvosporeus 0 1914 1 818 Streptomyces lavendulae species 0 Streptomyces sp. XZHG99 species 0 525 2049881 1 1993 species Streptomyces autolyticus 0 75293 1 0 species group 1125 2 629295 1 1482596 0 species subgroup 542 0 Streptomyces griseus species 542 1 1911 583 species subgroup 0 1482558 1 1 1908 0 Streptomyces globisporus species 583 707 species Streptomyces griseochromogenes 0 68214 1 68570 1 4030 Streptomyces albulus species 0 1 29303 0 Streptomyces cattleya species 578 0 species Streptomyces venezuelae 1442 1 54571 1915 1 Streptomyces lincolnensis species 0 858 526 0 Streptomyces parvulus species 1 146923 897 0 Streptomyces alfalfae species 1 1642299 362257 1 species Streptomyces vietnamensis 0 827 16 1 5 2063 4471 0 genus Kitasatospora 1 1894 627 0 Kitasatospora aureofaciens species 1234 0 species Kitasatospora setae 1 2066 1 2633591 0 no rank 793 793 Kitasatospora sp. MMS16-BH015 species 0 2018025 1 1801 Kitasatospora albolonga species 0 68173 1 0 order Propionibacteriales 5343 1 31 85009 30 13 1 85015 36 0 family Nocardioidaceae 2855 1197 0 genus Nocardioides 9 4 1 1839 534 0 species Nocardioides dokdonensis 1 450734 410 0 no rank 1 2615069 species Nocardioides sp. JS614 0 410 196162 1 2045452 1 Nocardioides sp. 78 species 0 244 2 1 2040 2 0 genus Aeromicrobium 377 375 0 species Aeromicrobium erythreum 1 2041 1 2044 1 2 605 genus Pimelobacter 0 2045 1 Pimelobacter simplex species 0 604 447 genus Kribbella 0 8 182639 1 2 1 182640 439 0 species Kribbella flavida 1 2 116071 2 0 Micropruina genus 193 75385 1 191 Micropruina glycogenica species 0 31957 17 1 8 family Propionibacteriaceae 0 2458 261 0 genus Microlunatus 2 2 1 29404 29405 1 species Microlunatus phosphovorus 0 259 12 1 5 72763 855 0 Tessaracoccus genus 1332264 1 239 Tessaracoccus aquimaris species 0 0 species Tessaracoccus flavescens 197 1 399497 226 0 no rank 1 2635419 1 1909732 0 species Tessaracoccus sp. T2.5-30 226 Tessaracoccus flavus species 0 181 1610493 1 genus 0 154 2801844 1 154 0 species Pseudopropionibacterium propionicum 1 1750 1912216 4 1 2 genus Cutibacterium 0 394 0 species Cutibacterium granulosum 93 1 33011 1 33010 0 Cutibacterium avidum species 145 154 0 Cutibacterium acnes species 1 1747 1 203133 0 genus 42 42 0 no rank 1 2633994 1 1871034 42 0 species Propionimicrobium sp. Marseille-P3275 341 genus 0 1912215 1 1748 1 341 species Acidipropionibacterium acidipropionici 0 2 1743 403 0 genus 1744 1 330 species Propionibacterium freudenreichii 0 73 0 no rank 1 2608905 0 Propionibacterium sp. oral taxon 193 species 73 1 671223 1 1643683 99 0 order 85032 1 99 family 0 1 28048 99 0 genus 0 Acidothermus cellulolyticus species 99 1 28049 1870 order Actinomycetales 0 6 2037 17 1 1864 Actinomycetaceae family 0 11 2049 1 16 65 0 genus 1 1653174 59505 1 65 Actinotignum schaalii species 0 1420 0 Actinomyces genus 17 9 1 1654 1912795 1 40 species Actinomyces sp. VUL4_3 0 544580 1 species Actinomyces oris 0 154 1 1960083 0 species Actinomyces gaoshouyii 170 29 0 species Actinomyces pacaensis 1 1852377 0 Actinomyces radicidentis species 342 1 111015 2609248 3 668 no rank 0 1 2081702 176 0 species Actinomyces sp. oral taxon 897 Actinomyces sp. oral taxon 414 species 0 315 712122 1 1 1851395 177 0 species Actinomyces sp. Chiba101 111 0 genus 1 1069494 1 1661 111 0 Trueperella pyogenes species genus Arcanobacterium 0 59 28263 2 1 2 Arcanobacterium haemolyticum species 0 57 28264 1 86 0 genus 1 2529408 52773 1 86 Actinomyces meyeri species 0 2050 1 genus 0 112 0 Mobiluncus curtisii species 112 1 2051 85014 3 order 0 372 85034 1 3 8 Glycomycetaceae family 0 372 genus Stackebrandtia 0 364 283810 2 1 5 1 283811 359 0 species Stackebrandtia nassauensis 126 no rank 0 52018 1 126 0 species Actinobacteria bacterium IMCC26256 1 1650658 1 4 414714 14 0 Catenulisporales order 2324 414877 1 3 9 Catenulisporaceae family 0 2310 4 2 1 414878 2301 0 Catenulispora genus 2297 0 species Catenulispora acidiphila 1 304895 84992 1 7 2 class Acidimicrobiia 0 828 12 84993 1 6 826 order Acidimicrobiales 0 3 1 3 84994 203 0 Acidimicrobiaceae family 53634 1 2 4 Acidimicrobium genus 0 200 1 53635 196 0 Acidimicrobium ferrooxidans species 2448023 2 family 0 611 Ilumatobacter genus 0 611 682522 2 1 2 0 Ilumatobacter coccineus species 609 1 467094 2244 class Coriobacteriia 0 8 84998 1 28 11 84999 1 13 840 Coriobacteriales order 0 1 84107 6 1 293 Coriobacteriaceae family 0 2 102106 1 2 107 Collinsella genus 0 1 74426 105 0 Collinsella aerofaciens species 1 2 33870 1 0 genus Coriobacterium 84 33871 1 Coriobacterium glomerans species 0 83 no rank 0 101 84113 1 101 0 Coriobacteriaceae bacterium 68-1-3 species 1 1531429 536 family 0 1643824 6 69 0 genus 1 2767353 1382 1 species Atopobium parvulum 0 69 1 1380 2 0 Atopobium genus 465 Olsenella genus 0 4 133925 4 1 100 Olsenella uli species 0 133926 1 1 1805478 201 0 species Olsenella sp. Marseille-P2300 160 no rank 0 2638792 1 0 species Olsenella sp. oral taxon 807 160 1 712411 9 1643822 1 14 1396 Eggerthellales order 0 0 Eggerthellaceae family 1387 1 13 1643826 8 1 84108 0 genus 118 species Slackia heliotrinireducens 0 118 84110 1 1981050 1 120 genus 0 0 species Phoenicibacter massiliensis 120 1 1944646 0 genus 159 1 447020 Adlercreutzia equolifaciens species 0 159 446660 1 0 genus Gordonibacter 468 3 1 644652 7 223 0 species Gordonibacter massiliensis 1 1841863 1335613 1 238 species Gordonibacter urolithinfaciens 0 84111 3 1 6 genus Eggerthella 0 362 2648737 1 no rank 0 95 95 0 species Eggerthella sp. YY7918 1 502558 261 species Eggerthella lenta 0 84112 1 1 84162 58 0 genus 0 species Cryptobacterium curtum 58 1 84163 94 genus Denitrobacterium 0 1 79603 2 1 1 79604 0 species Denitrobacterium detoxificans 93 430 class 0 84995 5 2 84996 5 1 430 Rubrobacterales order 0 84997 4 1 5 Rubrobacteraceae family 0 428 42255 3 1 6 Rubrobacter genus 0 423 1 42256 0 Rubrobacter radiotolerans species 204 49319 1 species Rubrobacter xylanophilus 0 213 34 200795 2994 0 phylum 5 292625 0 class 319 0 order Anaerolineales 319 1 5 292629 1 5 4 1 292628 318 0 Anaerolineaceae family 1 233189 97 0 genus Anaerolinea thermophila species 0 97 167964 1 1 2019482 0 genus 118 1 1986204 118 0 Brevefilum fermentans species 1 1324991 98 0 no rank 1889813 1 species Anaerolineaceae bacterium oral taxon 439 0 98 class Ardenticatenia 0 568 1382928 1 4 8 1382929 1 3 5 order Ardenticatenales 0 560 2 1382930 0 family 555 0 Candidatus Promineofilum genus 555 1 2 1988031 2 553 0 Candidatus Promineofilum breve species 1 1806508 426 0 class 5 189775 343 subclass 0 85000 3 order Sphaerobacterales 0 343 85001 1 3 5 255728 2 suborder 0 338 2 85002 338 0 family 0 Sphaerobacter genus 338 1 2 2056 3 0 species Sphaerobacter thermophilus 335 1 2057 0 order 83 2 189776 83 0 family Thermomicrobiaceae 2 2 1 189777 81 genus 0 499 1 500 1 species Thermomicrobium roseum 0 81 1064 0 class Chloroflexia 2 1 10 32061 8 9 1 32064 1062 0 Chloroflexales order 1508594 5 suborder 0 525 525 0 family Chloroflexaceae 1 5 1 1106 1 4 1107 5 0 Chloroflexus genus 524 species Chloroflexus aggregans 0 243 152260 1 0 species Chloroflexus aurantiacus 276 2 1 1108 138 138 strain Chloroflexus sp. Y-400-fl 0 480224 1 1508595 3 529 suborder 0 4 3 1 1508635 529 0 family Roseiflexaceae 120961 2 525 genus 0 243 no rank 0 2609473 1 243 0 Roseiflexus sp. RS-1 species 1 357808 1 120962 282 0 species Roseiflexus castenholzii 280 0 class 3 475962 order Caldilineales 0 280 475963 1 3 2 475964 2 family 0 278 3 2 1 233191 278 0 Caldilinea genus Caldilinea aerophila species 0 275 133453 1 0 Dehalococcoidia class 337 7 1 301297 3 670486 2 123 genus 0 78 0 species Dehalogenimonas formicexedens 1 1839801 0 Dehalogenimonas lykanthroporepellens species 45 1 552810 1 1202465 1 4 211 order Dehalococcoidales 0 210 family 0 1202464 3 1 61434 1 3 210 genus Dehalococcoides 0 160 Dehalococcoides mccartyi species 0 61435 1 0 no rank 49 1 237581 1522671 1 49 species Dehalococcoides sp. UCH007 0 17350 phylum 0 544448 101 0 Mollicutes class 16587 1 97 31969 56 8148 0 order Mycoplasmatales 37 1 44 2085 8111 0 family Mycoplasmataceae 24 43 1 2092 2196 0 genus 12 2767358 1 2115 172 0 species Mycoplasma fermentans 1 29555 0 species Mycoplasma canis 208 1 2110 0 species Mycoplasma agalactiae 215 0 Mycoplasma arginini species 156 1 2094 1 29553 0 Mycoplasma bovirhinis species 174 1 2112 126 0 Mycoplasma bovigenitalium species 201 Mycoplasma pulmonis species 0 2107 1 2113 1 114 Mycoplasma californicum species 0 368 Mycoplasma bovis species 0 28903 1 2109 1 128 Mycoplasma synoviae species 0 131 Mycoplasma pullorum species 0 48003 1 203 Mycoplasma cynos species 0 171284 1 3 1 3 2129 433 0 genus Ureaplasma 134821 1 238 species Ureaplasma parvum 0 2130 1 192 Ureaplasma urealyticum species 0 2093 1 27 67 Mycoplasma genus 0 5458 Mycoplasma mobile species 0 207 2118 1 Mycoplasma yeatsii species 0 212 51365 1 657 0 Mycoplasma haemofelis species 1 29501 303 Mycoplasma hominis species 0 2098 1 Mycoplasma canadense species 0 151 29554 1 species Mycoplasma putrefaciens 0 195 2123 1 2104 1 57 species Mycoplasma pneumoniae 0 0 no rank 116 1 2683645 116 species Mycoplasma sp. (ex Biomphalaria glabrata) 0 1749074 1 656088 3 species group 0 1046 2105 1 species Mycoplasma leachii 0 248 510 species Mycoplasma mycoides 0 2102 1 288 species Mycoplasma capricolum 0 2095 1 0 species Mycoplasma haemocanis 299 1 136241 93 0 species Mycoplasma suis 1 57372 1 2128 96 0 species Mycoplasma flocculare 1 86660 0 species Mycoplasma dispar 144 2096 1 137 Mycoplasma gallisepticum species 0 984991 1 Mycoplasma parvum species 0 151 1 2099 0 species Mycoplasma hyopneumoniae 359 42 0 species Mycoplasma ovis 1 171632 1 50052 0 Mycoplasma crocodyli species 189 240 0 species Mycoplasma penetrans 1 28227 175 0 Mycoplasma hyorhinis species 1 2100 2097 1 86 Mycoplasma genitalium species 0 45362 1 290 Mycoplasma bovoculi species 0 43 0 species Mycoplasma wenyonii 1 65123 2111 1 species Mycoplasma arthritidis 0 103 1493 Acholeplasmatales order 0 4 186329 1 13 7 2146 12 1 1489 family Acholeplasmataceae 0 4 2147 1 5 830 genus Acholeplasma 0 0 Acholeplasma laidlawii species 163 1 2148 1 38986 0 Acholeplasma palmae species 261 1 61635 120 0 species Acholeplasma brassicae species Acholeplasma oculi 0 282 35623 1 33926 1 6 6 Candidatus Phytoplasma genus 0 652 3 85620 0 species group 376 1 100379 0 Onion yellows phytoplasma species 145 202462 1 Maize bushy stunt phytoplasma species 0 110 121 species Aster yellows witches'-broom phytoplasma 0 229545 1 species group 0 134 85630 1 1 37692 134 0 Candidatus Phytoplasma mali species 0 species group 136 1 85632 59748 1 Candidatus Phytoplasma australiense species 0 136 6890 0 Entomoplasmatales order 9 1 39 186328 0 family Entomoplasmataceae 2113 1 14 33925 1 0 genus Entomoplasma 638 5 1 46238 7 81459 1 215 Entomoplasma melaleucae species 0 188 0 Entomoplasma somnilux species 1 215578 0 species Entomoplasma freundtii 78 1 74700 Entomoplasma luminosum species 0 150 214888 1 46239 8 1 41 genus Mesoplasma 0 1474 0 species Mesoplasma coleopterae 165 1 324078 0 Mesoplasma florum species 352 1 2151 species Mesoplasma syrphidae 0 150 225999 1 Mesoplasma chauliocola species 0 230 216427 1 219745 1 species Mesoplasma tabanidae 0 187 Mesoplasma entomophilum species 0 224 2149 1 125 0 Mesoplasma lactucae species 1 138853 0 family Spiroplasmataceae 4768 24 1 2131 5 1 23 2132 74 0 Spiroplasma genus 4763 0 Spiroplasma eriocheiris species 165 1 315358 Spiroplasma helicoides species 0 242 216938 1 216946 1 287 species Spiroplasma turonicum 0 213 0 species Spiroplasma kunkelii 1 47834 214 Spiroplasma clarkii species 0 2139 1 303 0 species Spiroplasma culicicola 1 216935 133 0 species Spiroplasma mirum 1 2144 2637901 2 no rank 0 328 Spiroplasma sp. NBRC 100390 species 0 164 1914410 1 0 Spiroplasma sp. TU-14 species 164 1 1898044 species Spiroplasma litorale 0 274 216942 1 species Spiroplasma monobiae 0 168 2136 1 0 Spiroplasma citri species 198 1 2133 Spiroplasma atrichopogonis species 0 135 1114980 1 362837 1 284 Spiroplasma cantharicola species 0 1 216944 165 0 species Spiroplasma sabaudiense 1 2137 0 Spiroplasma apis species 187 0 species Spiroplasma corruscae 221 1 216934 2145 1 Spiroplasma taiwanense species 0 275 216936 1 258 Spiroplasma diminutum species 0 216933 1 species Spiroplasma chrysopicola 0 140 216945 1 species Spiroplasma syrphidicola 0 161 338 0 species Spiroplasma floricola 1 216937 713063 2 no rank 0 505 268 0 Tenericutes bacterium MO-XQ species 1 1911684 Tenericutes bacterium MZ-XQ species 0 237 1911683 1 no rank 0 258 2799557 2 0 Candidatus Izimaplasma genus 258 2 1 1912503 5 2624196 1 no rank 0 253 1541959 1 Candidatus Izimaplasma sp. HR1 species 0 253 1798711 156 1319705 clade 0 156 1 1117 13 0 Cyanobacteria phylum 1319705 no rank 0 265 1983111 1 1 718217 0 species cyanobacterium endosymbiont of Epithemia turgida 265 1285688 Synechococcales order 0 123 1890424 1 57 1890438 6 1 13 Leptolyngbyaceae family 0 1052 Leptolyngbya genus 0 1039 47251 1 5 15 no rank 0 845 2650499 3 301 species Leptolyngbya sp. O-77 0 1080068 1 1 1752064 0 species Leptolyngbya sp. NIES-3755 162 1 111781 382 0 Leptolyngbya sp. PCC 7376 species 179 0 Leptolyngbya boryana species 1 1184 0 family Merismopediaceae 822 1 5 1890428 3 819 genus Synechocystis 0 20 1142 4 1 no rank 0 799 2640012 3 2116702 1 200 Synechocystis sp. IPPAS B-1465 species 0 1147 1 Synechocystis sp. PCC 6714 species 0 399 1148 1 species Synechocystis sp. PCC 6803 0 200 0 family Synechococcaceae 320308 33 1 1890426 35 3394 Cyanobium genus 0 19 167375 1 3 1 2627006 0 no rank 1803 1 1851505 0 Cyanobium sp. NIES-981 species 1803 species Cyanobium gracile 0 1572 59930 1 401 0 Dactylococcopsis genus 1 2 1 13034 1 292566 0 species Dactylococcopsis salina 400 165 genus 0 146785 1 146786 1 Thermosynechococcus elongatus species 0 165 316313 Synechococcus genus 0 682 1129 1 26 0 Synechococcus elongatus species 228 1 32046 2626047 23 no rank 0 315256 1 585425 3090 0 Synechococcus sp. KORDI-52 species 195253 1 Synechococcus sp. PCC 6312 species 0 173 0 Synechococcus sp. RCC307 species 21296 1 316278 195248 1 95 Synechococcus sp. PCC 8807 species 0 1 374982 0 species Synechococcus sp. PCC 73109 92 Synechococcus sp. PCC 7002 species 0 104 32049 1 species Synechococcus sp. PCC 7502 0 298 1173263 1 143 0 Synechococcus sp. NIES-970 species 1 1827144 0 Synechococcus sp. KORDI-49 species 45217 1 585423 1346 species Synechococcus sp. SynAce01 0 1916956 1 1 84588 0 species Synechococcus sp. WH 8102 112731 1 195498 103 0 species Synechococcus sp. PCC 7117 1 374981 0 species Synechococcus sp. PCC 7003 133 0 Synechococcus sp. CC9605 species 3948 1 110662 3784 species Synechococcus sp. WH 8109 0 166314 1 species Synechococcus sp. KORDI-100 0 4376 1280380 1 Synechococcus sp. CC9902 species 0 1002 316279 1 183 0 species Synechococcus sp. JA-3-3Ab 1 321327 1350461 1 225 species Synechococcus sp. UTEX 2973 0 1 32051 0 species Synechococcus sp. WH 7803 2242 1 321332 241 0 Synechococcus sp. JA-2-3B'a(2-13) species 601 0 Synechococcus sp. CC9311 species 1 64471 113833 Synechococcus sp. WH 8103 species 0 29410 1 147 Synechococcus lividus species 0 33070 1 1 5 1213 8 0 Prochloraceae family 961617 Prochlorococcus genus 0 961609 1218 1 4 32 0 no rank 219661 2 2627481 1 1501269 0 Prochlorococcus sp. MIT 0801 species 5071 0 Prochlorococcus sp. MIT 0604 species 214590 1 1501268 1219 1 741916 species Prochlorococcus marinus 0 2 2303730 509 0 family 0 genus Halomicronema 509 1 2 170610 4 505 0 species Halomicronema hongdechloris 1 1209493 1890429 2 family 0 533 4 155977 2 1 533 genus Acaryochloris 0 155978 1 529 species Acaryochloris marina 0 3 1 3 1890436 724 0 Pseudanabaenaceae family 1152 2 1 10 genus Pseudanabaena 0 721 2593292 1 no rank 0 711 1 82654 711 0 species Pseudanabaena sp. PCC 7367 0 Nostocales order 15494 33 1 1161 63 4321 0 family 8 2661849 23 8 1 1186 4321 0 genus Calothrix 2619626 6 3672 no rank 0 1 1337936 443 0 Calothrix sp. 336/3 species 605 Calothrix sp. PCC 7507 species 0 99598 1 625 0 Calothrix sp. NIES-4101 species 1 2005461 2005469 1 Calothrix sp. NIES-4071 species 0 821 622 species Calothrix sp. NIES-2098 0 1954171 1 species Calothrix sp. NIES-3974 0 556 2005462 1 626 Calothrix parietina species 0 32054 1 1 1219117 0 no rank 414 species Nostocales cyanobacterium HT-58-2 0 414 1940762 1 1309 family 0 1892263 2 1309 genus Fischerella 0 4 1190 2 1 1 494603 1305 0 no rank 1752063 1 Fischerella sp. NIES-3754 species 0 1305 1347 0 family Rivulariaceae 20 3 1 1185 2 1 373984 1 0 genus Rivularia 1327 1326 0 no rank 1 2676603 0 species Rivularia sp. PCC 7116 1326 1 373994 1 18 1162 23 0 family Nostocaceae 8040 genus Anabaena 0 1682 1163 1 4 20 2 2619674 0 no rank 1065 1647413 1 572 species Anabaena sp. WA102 0 Anabaena sp. 90 species 0 493 46234 1 species Anabaena cylindrica 0 597 1165 1 1005 Trichormus genus 0 4 264688 3 1 502 Trichormus variabilis species 0 264691 1 1 1164 499 0 Trichormus azollae species 1177 10 1 43 Nostoc genus 0 5330 1 272131 0 Nostoc punctiforme species 521 0 no rank 4088 7 2593658 541 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 1618022 1 0 species Nostoc sp. PCC 7120 474 1 103690 1 1261031 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 612 Nostoc sp. PCC 7524 species 0 646 28072 1 1869241 1 Nostoc sp. CENA543 species 0 558 1751286 1 541 species Nostoc sp. NIES-3756 0 317936 1 Nostoc sp. PCC 7107 species 0 716 1306274 1 Nostoc flagelliforme species 0 678 0 order Chroococcidiopsidales 1136 4 1 1890505 8 1 3 1890528 19 0 family Chroococcidiopsidaceae 1128 2 54298 1 2 1109 Chroococcidiopsis genus 0 1107 species Chroococcidiopsis thermalis 0 54299 1 0 subclass 14743 46 1301283 0 order Oscillatoriales 5342 21 1 1150 61 1892255 1 3 1 Gomontiellaceae family 0 375 374 genus Crinalium 0 1 241421 1 2 0 species Crinalium epipsammum 373 1 241425 0 Oscillatoriaceae family 3146 1 6 1892254 37 1155738 2 1 8 genus Moorea 0 1313 1 1155739 1305 0 Moorea producens species genus Oscillatoria 0 1796 1158 1 3 6 Oscillatoria acuminata species 0 1067 118323 1 482564 1 723 Oscillatoria nigro-viridis species 0 20 1892252 5 1 1235 Microcoleaceae family 0 1 1205 2 1 883 genus Trichodesmium 0 1206 1 882 species Trichodesmium erythraeum 0 332 0 genus Microcoleus 7 2 1 44471 325 0 no rank 1 2642155 1 1173027 325 0 species Microcoleus sp. PCC 7113 12 1892251 3 1 304 family Coleofasciculaceae 0 63132 1 2 6 Geitlerinema genus 0 292 1 2648775 0 no rank 286 1173025 1 286 species Geitlerinema sp. PCC 7407 0 0 family Cyanothecaceae 221 3 1 1892249 14 Cyanothece genus 0 207 43988 1 2 27 2649277 1 180 no rank 0 0 Cyanothece sp. PCC 7425 species 180 1 395961 order Chroococcales 0 9401 1118 25 1 39 0 Microcystaceae family 1828 4 1 1890449 16 3 1 1125 9 0 Microcystis genus 1812 1126 1 Microcystis aeruginosa species 0 1341 2643300 1 no rank 0 462 1 1967666 462 0 Microcystis sp. MC19 species 8 1 1890464 42 0 family Chroococcaceae 4019 102231 1 2 2 Gloeocapsa genus 0 412 410 no rank 0 2623012 1 1173026 1 410 species Gloeocapsa sp. PCC 7428 0 2 268175 2 1 2164 Chondrocystis genus 0 0 no rank 2162 1 2648896 0 Chondrocystis sp. NIES-4102 species 2162 1 2005460 669357 3 1 7 genus Geminocystis 0 1401 no rank 0 1394 2625037 2 1 1615909 0 Geminocystis sp. NIES-3708 species 845 1 1617448 549 0 Geminocystis sp. NIES-3709 species 8 1890450 9 1 2903 family Aphanothecaceae 0 2546365 2 genus 0 613 2 2546366 0 species 613 Cyanothece sp. PCC 8802 strain 0 296 395962 1 41431 1 317 Cyanothece sp. PCC 8801 strain 0 1453359 1 414 genus 0 414 0 species Candidatus Atelocyanobacterium thalassa 1 713887 28070 2 genus 0 1095 1 2546359 0 species 578 578 0 strain Cyanothece sp. PCC 7822 1 497965 1 2546356 517 0 species 517 0 strain Cyanothece sp. PCC 7424 1 65393 326 no rank 0 92682 2 1 76023 1 2 326 Halothece genus 0 2632878 1 no rank 0 325 325 species Halothece sp. PCC 7418 0 65093 1 1 263510 447 0 genus 0 species 447 1 2546360 Cyanothece sp. ATCC 51142 strain 0 447 43989 1 612 0 family Cyanobacteriaceae 11 3 1 1890452 0 Cyanobacterium genus 601 1 2 102234 2 1 379064 599 0 species Cyanobacterium aponinum 2 1 8 52604 1695 0 Pleurocapsales order 4 1 1890498 13 0 Dermocarpellaceae family 1345 1332 Stanieria genus 0 14 102115 3 1 1 102116 514 0 species Stanieria cyanosphaera 1 2642663 804 0 no rank 1807358 1 species Stanieria sp. NIES-3757 0 804 18 3 1 1890500 348 0 Hyellaceae family 1 44474 2 1 330 genus Pleurocapsa 0 54308 1 329 species Pleurocapsa minor 0 671 0 Gloeobacteria class 3 6 1 307596 Gloeobacterales order 0 668 307595 1 5 3 8 1 4 1890422 665 0 Gloeobacteraceae family 657 genus Gloeobacter 0 3 33071 1 3 333 Gloeobacter violaceus species 0 33072 1 321 0 species Gloeobacter kilaueensis 1 1416614 248 phylum 0 67819 3 1 3 1663419 4 0 class Fimbriimonadia 248 1663425 2 order 0 244 0 family 244 2 1663426 1005038 1 2 2 genus Fimbriimonas 0 244 1005039 1 species Fimbriimonas ginsengisoli 0 242 37 658 1 1239 147673 0 Firmicutes phylum 1 14 1737404 4 0 class Tissierellia 1915 no rank 0 170 1737407 1 170 0 genus 1 1582879 Ezakiella massiliensis species 0 170 1852374 1 0 Tissierellales order 1741 12 1 1737405 5 2 2042895 377 0 family 0 genus Gottschalkia 377 2 1 1505664 1 1556 1 Gottschalkia acidurici species 0 376 1570339 1 9 2 Peptoniphilaceae family 0 1359 423 Anaerococcus genus 0 1 165779 1 3 species Anaerococcus mediterraneensis 0 216 1870984 1 33034 1 206 Anaerococcus prevotii species 0 1 543311 364 0 genus 364 Parvimonas micra species 0 33033 1 1 1 2 1161127 126 0 genus Murdochiella 1852373 1 125 species Murdochiella vaginalis 0 162289 1 genus 0 175 0 no rank 175 1 2637196 1 1912856 0 Peptoniphilus sp. ING2-D1G species 175 0 genus 269 1 150022 1260 1 Finegoldia magna species 0 269 688 class 0 526524 9 1 526525 9 1 688 order Erysipelotrichales 0 687 0 family Erysipelotrichaceae 4 8 1 128827 292 0 Erysipelothrix genus 1 1 3 1647 165 Erysipelothrix larvae species 0 1514105 1 0 species Erysipelothrix rhusiopathiae 126 1 1648 no rank 0 111 544447 1 1 1834207 0 Erysipelotrichaceae bacterium I46 species 111 1 1729679 0 genus 102 1 1702221 102 0 Faecalibaculum rodentium species 3 2 1 191303 178 0 Turicibacter genus 1 2638206 0 no rank 175 1712675 1 175 Turicibacter sp. H121 species 0 65 91061 1 416 91087 class Bacilli 0 183 1385 1 254 64525 order Bacillales 0 12412 0 Paenibacillaceae family 26 44 1 186822 no rank 0 262 85151 2 262 0 genus 2 55079 1 1500254 0 species Aneurinibacillus soli 146 1 2642329 0 no rank 116 116 Aneurinibacillus sp. XH2 species 0 1450761 1 0 genus Brevibacillus 989 4 1 55080 4 1 54913 211 0 species Brevibacillus formosus 1465 1 454 Brevibacillus laterosporus species 0 1393 1 species Brevibacillus brevis 0 320 1 76632 201 0 genus 201 0 Thermobacillus composti species 1 377615 57 1 36 44249 10934 0 genus Paenibacillus 1763538 1 Paenibacillus crassostreae species 0 209 176 species Paenibacillus ihbetae 0 1870820 1 497 Paenibacillus mucilaginosus species 0 61624 1 1 1462996 0 Paenibacillus yonginensis species 150 0 species Paenibacillus xylanexedens 126 1 528191 1 414771 0 Paenibacillus donghaensis species 902 1 172713 183 0 Paenibacillus kribbensis species 1 189425 0 Paenibacillus graminis species 419 94 Paenibacillus sabinae species 0 365617 1 0 Paenibacillus stellifer species 128 1 169760 160799 1 Paenibacillus borealis species 0 319 305 species Paenibacillus larvae 0 1464 1 0 species Paenibacillus beijingensis 173 1 1126833 1 1406 0 species Paenibacillus polymyxa 1607 species Paenibacillus peoriae 0 318 59893 1 2044880 1 species group 0 235 235 0 species Paenibacillus riograndensis 1 483937 1 189426 227 0 Paenibacillus odorifer species 13 185978 0 no rank 3672 1 1536773 198 0 species Paenibacillus sp. FSL R7-0331 1 324057 141 0 Paenibacillus sp. JDR-2 species 481743 1 Paenibacillus sp. Y412MC10 species 0 175 1536772 1 species Paenibacillus sp. FSL R7-0273 0 194 181 Paenibacillus sp. lzh-N1 species 0 2069255 1 species Paenibacillus sp. BIHB4019 0 313 1870819 1 213 species Paenibacillus sp. 32O-W 0 1695218 1 1536770 1 species Paenibacillus sp. FSL R5-0345 0 541 221 0 species Paenibacillus sp. FSL H7-0737 1 1536775 1 1536774 0 species Paenibacillus sp. FSL H7-0357 246 0 Paenibacillus sp. IHBB 10380 species 494 1 1566358 Paenibacillus sp. FSL P4-0081 species 0 533 1536769 1 222 0 species Paenibacillus sp. FSL R5-0912 1 1536771 369 0 species Paenibacillus durus 1 44251 96 Paenibacillus naphthalenovorans species 0 162209 1 1616788 1 Paenibacillus bovis species 0 363 0 Paenibacillus terrae species 157 1 159743 1 1178515 152 0 species Paenibacillus swuensis 186821 1 137 family 0 137 no rank 0 663587 1 0 [Bacillus] selenitireducens species 137 1 85683 10997 0 family Staphylococcaceae 22 1 41 90964 4 1 2 45669 107 0 genus Salinicoccus 0 species Salinicoccus halodurans 103 1 407035 2005363 1 191 genus 0 0 species Auricoccus indicus 191 1 1849491 568 0 genus Macrococcus 5 1 4 69965 1 69966 0 species Macrococcus caseolyticus 169 0 no rank 208 1 2619255 208 species Macrococcus sp. IME1552 0 1898474 1 species Macrococcus canis 0 186 1855823 1 1279 1 33 81 genus Staphylococcus 0 10109 263 Staphylococcus succinus species 0 61015 1 161 Staphylococcus lutrae species 0 155085 1 1 91994 0 no rank 275 1 1715860 0 Staphylococcus sp. AntiMn-1 species 275 1 643214 0 Staphylococcus stepanovicii species 273 28035 1 Staphylococcus lugdunensis species 0 267 species Staphylococcus sciuri 0 360 1296 1 1283 1 Staphylococcus haemolyticus species 0 317 224 Staphylococcus simulans species 0 1286 1 Staphylococcus warneri species 0 246 1292 1 0 species Staphylococcus hominis 304 1 1290 29384 1 Staphylococcus kloosii species 0 252 29382 1 241 species Staphylococcus cohnii 0 283734 1 species Staphylococcus pseudintermedius 0 210 1 1281 228 0 Staphylococcus carnosus species 1 1288 558 0 Staphylococcus xylosus species 242 0 Staphylococcus condimenti species 1 70255 0 Staphylococcus muscae species 103 1 1294 species Staphylococcus argenteus 0 342 985002 1 1 45972 691 0 Staphylococcus pasteuri species Staphylococcus schleiferi species 0 257 1295 1 0 Staphylococcus aureus species 1064 1 1280 1 985762 191 0 species Staphylococcus agnetis 1 308354 332 0 species Staphylococcus simiae 70258 1 196 species Staphylococcus piscifermentans 0 214473 1 240 Staphylococcus nepalensis species 0 120 Staphylococcus pettenkoferi species 0 170573 1 640 0 Staphylococcus epidermidis species 1 1282 1284 1 186 Staphylococcus hyicus species 0 1 46127 0 Staphylococcus felis species 193 246432 1 435 Staphylococcus equorum species 0 318 species Staphylococcus capitis 0 29388 1 299 0 Staphylococcus saprophyticus species 1 29385 699 0 family Alicyclobacillaceae 1 1 8 186823 1129704 2 genus 0 194 98 Kyrpidia sp. EA-1 species 0 2055160 1 96 Kyrpidia tusciae species 0 33943 1 1 3 432330 2 0 Tumebacillus genus 329 78 species Tumebacillus algifaecis 0 1214604 1 1903704 1 species Tumebacillus avium 0 249 29330 1 2 2 Alicyclobacillus genus 0 175 405212 1 Alicyclobacillus acidocaldarius species 0 173 32758 0 family Bacillaceae 48 1 115 186817 1 1329200 1 3 384 genus Fictibacillus 0 0 species Fictibacillus arsenicus 204 1 255247 0 Fictibacillus phosphorivorans species 179 1 1221500 641 genus 0 2675229 2 264697 1 Bacillus muralis species 0 126 1 1478 515 0 Bacillus simplex species 2675230 2 593 genus 0 0 Bacillus oceanisediminis species 249 1 665099 0 species Bacillus kochii 344 1 859143 genus 0 127 175304 1 1472767 1 Lentibacillus amyloliquefaciens species 0 127 Bacillus genus 0 21568 1386 1 58 301 375 species Bacillus flexus 0 86664 1 1 79883 0 Bacillus horikoshii species 156 Bacillus aryabhattai species 0 230 412384 1 1 1792192 189 0 species group 189 0 species Bacillus altitudinis 1 293387 561879 1 411 Bacillus safensis species 0 1479 1 170 Bacillus smithii species 0 738 species Bacillus pumilus 0 1408 1 653685 9 2691 species group 0 1423 1 species Bacillus subtilis 0 1064 23 0 Bacillus vallismortis species 1 72361 species subgroup 0 871 1938374 3 659243 1 Bacillus siamensis species 0 61 492670 1 370 species Bacillus velezensis 0 0 species Bacillus amyloliquefaciens 440 1 1390 1452 1 249 species Bacillus atrophaeus 0 0 species Bacillus paralicheniformis 161 1 1648923 181 0 Bacillus licheniformis species 1 1402 species Bacillus sonorensis 0 142 119858 1 86661 10 species group 0 10837 658666 1 285 species Bacillus bombysepticus 0 1392 1 692 Bacillus anthracis species 0 1428 1 Bacillus thuringiensis species 0 3788 3777 Bacillus cereus species 0 1396 1 155322 1 211 Bacillus toyonensis species 0 1405 1 species Bacillus mycoides 0 1157 0 species Bacillus cytotoxicus 287 1 580165 2750818 3 no rank 0 640 0 Bacillus sp. HBCD-sjtu species 173 1 2053832 1892404 1 species Bacillus sp. ABP14 0 168 299 species Bacillus sp. FDAARGOS_235 0 1839798 1 1664069 1 Bacillus glycinifermentans species 0 212 1 1471 291 0 Bacillus methanolicus species 0 Bacillus gibsonii species 38 1 79881 no rank 0 1779 185979 19 1 1565991 188 0 species Bacillus sp. X1(2014) 0 species Bacillus sp. MD-5 71 1 2009331 666686 1 300 species Bacillus sp. 1NLA3E 0 0 Bacillus sp. OxB-1 species 92 1 98228 1 563169 0 species Bacillus sp. SJ-10 54 1409 1 24 species Bacillus sp. (in: Bacteria) 0 Bacillus sp. 275 species 0 36 1941347 1 species Bacillus sp. Pc3 0 52 1446792 1 26 species Bacillus sp. LM 4-2 0 1628753 1 56 Bacillus sp. SDLI1 species 0 1774743 1 1 1856406 94 0 species Bacillus sp. H15-1 0 Bacillus sp. BH072 species 27 1 1570330 1 1574141 33 0 Bacillus sp. YP1 species 1 756828 0 Bacillus sp. WP8 species 218 Bacillus sp. 1s-1 species 0 94 2026248 1 0 species Bacillus sp. IHB B 7164 250 1 1827146 64 Bacillus sp. JS species 0 1127744 1 1837130 1 75 Bacillus sp. FJAT-14266 species 0 2049935 1 Bacillus sp. Lzh-5 species 0 25 118 0 species Bacillus infantis 1 324767 1404 1 Bacillus megaterium species 0 1098 1 1178537 0 Bacillus xiamenensis species 134 250 0 Bacillus coagulans species 1 1398 353 Bacillus cellulosilyticus species 0 1413 1 1 135735 0 Bacillus endophyticus species 328 632773 1 111 species Bacillus beveridgei 0 323 species Bacillus weihaiensis 0 1547283 1 1 33932 435 0 Bacillus cohnii species 45667 1 3 3 genus Halobacillus 0 318 1 402384 0 Halobacillus mangrovi species 182 1 1570 133 0 species Halobacillus halophilus 459532 1 genus 0 133 Terribacillus aidingensis species 0 133 586416 1 1 2 1 351195 110 0 Salimicrobium genus species Salimicrobium jeotgali 0 109 1230341 1 129337 15 1 85 Geobacillus genus 0 1760 4 1505648 510 0 species group species Geobacillus thermocatenulatus 0 85 33938 1 1 169283 0 Geobacillus lituanicus species 82 1462 1 92 species Geobacillus kaustophilus 0 33941 1 251 species Geobacillus thermoleovorans 0 127 0 species Geobacillus thermodenitrificans 1 33940 0 Geobacillus genomosp. 3 species 68 1 1921421 158 0 species Geobacillus stearothermophilus 1 1422 90 0 species Geobacillus subterraneus 1 129338 6 2642459 722 0 no rank 0 Geobacillus sp. C56-T3 species 154 1 691437 0 Geobacillus sp. Y4.1MC1 species 188 1 581103 550542 1 species Geobacillus sp. Y412MC52 0 36 0 Geobacillus sp. Y412MC61 species 48 1 544556 1233873 1 species Geobacillus sp. GHH01 0 57 239 Geobacillus sp. WCH70 species 0 471223 1 0 genus 565 1 182709 565 0 species Oceanobacillus iheyensis 1 182710 Virgibacillus genus 0 1709 84406 7 1 6 1 1482 276 0 Virgibacillus halodenitrificans species 253 0 Virgibacillus phasianinus species 1 2017483 2620237 2 no rank 0 508 Virgibacillus sp. 6R species 0 268 1911587 1 403957 1 species Virgibacillus sp. SK37 0 240 1473 1 Virgibacillus pantothenticus species 0 318 163877 1 348 Virgibacillus necropolis species 0 2675234 5 1201 genus 0 1 86665 0 Bacillus halodurans species 95 Bacillus krulwichiae species 0 377 199441 1 79885 1 species Bacillus pseudofirmus 0 251 300825 1 236 Bacillus lehensis species 0 242 0 species Bacillus clausii 1 79880 1055323 1 genus 0 229 229 species Aeribacillus pallidus 0 33936 1 29331 1 genus 0 197 Amphibacillus xylanus species 0 197 1449 1 180 genus 0 1906945 1 180 species Parageobacillus thermoglucosidasius 0 1426 1 17 400634 5 1 1748 Lysinibacillus genus 0 28031 1 254 species Lysinibacillus fusiformis 0 832 0 Lysinibacillus sphaericus species 1 1421 1 2636778 336 0 no rank 2072025 1 Lysinibacillus sp. YS11 species 0 336 1 1145276 0 Lysinibacillus varians species 309 1247 Anoxybacillus genus 0 7 150247 1 6 294699 1 246 species Anoxybacillus amylolyticus 0 1 198467 0 species Anoxybacillus gonensis 179 2 2639704 494 0 no rank Anoxybacillus sp. B7M1 species 0 267 1490057 1 227 0 species Anoxybacillus sp. B2M1 1 1490052 33934 1 Anoxybacillus flavithermus species 0 321 family 0 88 186824 1 0 genus 88 1 1677050 88 species Novibacillus thermophilus 0 1471761 1 4607 0 Planococcaceae family 12 1 25 186818 157226 1 genus 0 229 1 1508404 0 Jeotgalibacillus malaysiensis species 229 0 Sporosarcina genus 1365 1 5 1569 12 1 1476 542 0 Sporosarcina psychrophila species 0 no rank 220 2 2647733 Sporosarcina sp. P33 species 0 113 1930764 1 107 0 species Sporosarcina sp. P37 1 1930546 Sporosarcina ureae species 0 591 1571 1 217 0 genus Kurthia 2 1 2 1649 1 2644826 0 no rank 215 1 1750719 215 0 Kurthia sp. 11kri321 species 5 648800 3 1 559 genus Solibacillus 0 species Solibacillus silvestris 0 290 76853 1 0 no rank 264 1 2637870 species Solibacillus sp. R5-41 0 264 2048654 1 1 12 1372 17 0 genus Planococcus 1999 2662419 2 377 no rank 0 1526927 1 Planococcus sp. PAMC 21323 species 0 202 175 Planococcus sp. MB-3u-03 species 0 2058136 1 species Planococcus kocurii 0 182 1374 1 1302659 1 228 Planococcus sp. L10.15 species 0 1 1598147 218 0 Planococcus faecalis species Planococcus rifietoensis species 0 129 200991 1 1038856 1 63 Planococcus plakortidis species 0 192421 1 species Planococcus maritimus 0 194 species Planococcus donghaensis 0 206 414778 1 0 species Planococcus halocryophilus 253 1 1215089 1 161360 132 0 Planococcus antarcticus species 226 0 genus 1 648802 0 Rummeliibacillus stabekisii species 226 1 241244 811 0 no rank 9 539002 215 no rank 0 539738 2 1378 1 2 1 Gemella genus 0 215 1 2624949 0 no rank 214 1785995 1 214 Gemella sp. oral taxon 928 species 0 7 539742 596 0 no rank Exiguobacterium genus 0 596 33986 7 1 2 species Exiguobacterium antarcticum 0 69 132920 1 452 no rank 0 2644629 4 1849031 1 species Exiguobacterium sp. U13-1 0 153 1 1224749 168 0 Exiguobacterium sp. ZWU0009 species 1 1399115 0 Exiguobacterium sp. MH3 species 57 74 0 Exiguobacterium sp. AT1b species 1 360911 0 Exiguobacterium sibiricum species 73 1 332410 186820 1 9 3 Listeriaceae family 0 1833 21 6 1 1637 1651 0 Listeria genus 1639 1 649 Listeria monocytogenes species 0 1 1643 0 Listeria welshimeri species 217 1 1642 0 Listeria innocua species 215 189 species Listeria seeligeri 0 1640 1 360 0 Listeria ivanovii species 1 1638 1 2755 1 2 179 Brochothrix genus 0 Brochothrix thermosphacta species 0 178 2756 1 Lactobacillales order 0 26497 186826 1 161 69 family Enterococcaceae 0 3297 81852 19 1 4 275 0 genus 1 51668 species Tetragenococcus halophilus 0 275 51669 1 11 12 1 1350 2315 0 genus Enterococcus 1 2005703 0 Enterococcus wangshanyuanii species 204 1 53345 142 0 species Enterococcus durans 248 0 species Enterococcus hirae 1 1354 217 0 Enterococcus mundtii species 1 53346 0 species Enterococcus thailandicus 206 1 417368 1 1352 369 0 Enterococcus faecium species Enterococcus casseliflavus species 0 137 37734 1 no rank 0 429 2608891 3 0 species Enterococcus sp. CR-Ec1 132 1 2057791 148 Enterococcus sp. FDAARGOS_163 species 0 2060306 1 2060307 1 149 Enterococcus sp. FDAARGOS_375 species 0 1 1351 352 0 species Enterococcus faecalis 2737 1 3 1 Vagococcus genus 0 424 1 633807 0 Vagococcus penaei species 203 1 519472 220 0 species Vagococcus teuberi 279 genus Melissococcus 0 1 33969 2 1 1 33970 278 0 Melissococcus plutonius species 17 33958 1 58 9656 family Lactobacillaceae 0 2742598 3 646 genus 0 Lactobacillus mucosae species 0 142 97478 1 species Lactobacillus reuteri 0 389 1598 1 1 1613 0 species Lactobacillus fermentum 115 2759736 3 genus 0 571 0 species Lactobacillus casei 213 1 1582 1 1597 0 Lactobacillus paracasei species 164 194 Lactobacillus rhamnosus species 0 47715 1 2767842 3 genus 0 905 Lactobacillus paraplantarum species 0 76 60520 1 0 species Lactobacillus pentosus 119 1 1589 1590 1 species Lactobacillus plantarum 0 710 992 genus 0 2767879 6 0 species Lactobacillus ginsenosidimutans 201 1 1007676 0 species Lactobacillus heilongjiangensis 136 1 1074467 152 0 Lactobacillus allii species 1 1847728 1 392416 0 species Lactobacillus crustorum 188 148 0 species Lactobacillus farciminis 1 1612 1 1602 167 0 species Lactobacillus alimentarius 2767886 3 263 genus 0 73 Lactobacillus koreensis species 0 637971 1 0 species Lactobacillus zymae 60 1 267363 1 1580 130 0 Lactobacillus brevis species 0 genus Pediococcus 739 6 1 1253 3 100 species group 0 1670797 1 100 0 species Pediococcus acidilactici 1 1254 Pediococcus inopinatus species 0 161 114090 1 120 0 species Pediococcus claussenii 1 187452 1255 1 Pediococcus pentosaceus species 0 205 species Pediococcus damnosus 0 150 51663 1 291 genus 0 2767889 2 375175 1 154 species Lactobacillus backii 0 1610 1 137 Lactobacillus coryniformis species 0 0 genus 168 1 2767890 168 species Lactobacillus hokkaidonensis 0 1193095 1 genus 0 256 2767893 3 152331 1 Lactobacillus parabuchneri species 0 68 1581 1 97 species Lactobacillus buchneri 0 1138822 1 91 species Lactobacillus curieae 0 genus 0 350 2767881 2 1 53444 0 Lactobacillus lindneri species 205 1 1625 145 0 species Lactobacillus sanfranciscensis 760 0 genus 4 2767887 89059 1 Lactobacillus acidipiscis species 0 96 1623 1 70 species Lactobacillus ruminis 0 1601 1 74 Lactobacillus agilis species 0 1624 1 species Lactobacillus salivarius 0 520 genus 0 59 2767876 1 Lactobacillus amylophilus species 0 59 1603 1 357 genus 0 2767885 2 236 species Lactobacillus sakei 0 1599 1 species Lactobacillus curvatus 0 121 28038 1 96 0 genus 1 2767877 species Lactobacillus kunkeei 0 96 148814 1 0 genus 141 1 2767892 Lactobacillus paracollinoides species 0 141 240427 1 3045 genus Lactobacillus 0 44 1578 16 1 0 species Lactobacillus amylovorus 189 1 1604 474 0 no rank 4 2620435 2108362 1 species Lactobacillus sp. D1501 0 81 0 Lactobacillus sp. wkB8 species 181 1 1545702 2099789 1 78 Lactobacillus sp. CBA3606 species 0 134 Lactobacillus sp. CBA3605 species 0 2099788 1 1 1579 141 0 Lactobacillus acidophilus species 0 Lactobacillus helveticus species 343 1 1587 447 0 species Lactobacillus delbrueckii 1 1584 267818 1 157 Lactobacillus kefiranofaciens species 0 1 83683 101 0 species Lactobacillus amylolyticus 52242 1 Lactobacillus gallinarum species 0 133 0 Lactobacillus acetotolerans species 128 1 1600 0 species Lactobacillus gasseri 341 1 1596 33959 1 355 Lactobacillus johnsonii species 0 192 Lactobacillus jensenii species 0 109790 1 1 10 186828 3 0 Carnobacteriaceae family 1861 1 191769 323 0 genus 0 no rank 323 1 2632303 1911586 1 323 Marinilactibacillus sp. 15R species 0 308 0 Jeotgalibaca genus 1 1 3 1470540 708126 1 151 Jeotgalibaca dankookensis species 0 156 no rank 0 2621505 1 1903686 1 156 species Jeotgalibaca sp. PTS2502 0 genus Carnobacterium 0 1227 2747 5 1 11 257487 2 392 no rank 0 1 208596 222 0 species Carnobacterium sp. 17-4 1564681 1 170 species Carnobacterium sp. CP1 0 1 2751 613 0 Carnobacterium maltaromaticum species 147709 1 species Carnobacterium inhibens 0 211 1897 Leuconostocaceae family 0 4 81850 1 16 1 46254 113 0 genus 113 Oenococcus oeni species 0 1247 1 585 0 genus 5 46255 0 Weissella jogaejeotgali species 164 1 1631871 1249 1 species Weissella paramesenteroides 0 112 1 165096 0 Weissella koreensis species 161 52 0 species Weissella ceti 1 759620 0 Weissella cibaria species 96 1 137591 5 1 9 1243 1195 0 genus Leuconostoc 50 species Leuconostoc lactis 0 1246 1 1 1252 155 0 species Leuconostoc carnosum 1245 1 344 species Leuconostoc mesenteroides 0 136609 1 species Leuconostoc kimchii 0 117 Leuconostoc citreum species 0 89 33964 1 255248 1 species Leuconostoc garlicum 0 50 species Leuconostoc gelidum 0 263 1244 1 122 no rank 0 2685106 1 1 979982 0 Leuconostoc sp. C2 species 122 263855 1 181 no rank 0 181 0 species Lactobacillales bacterium 1 1993866 7 186827 654 0 family 654 0 genus Aerococcus 5 1 7 1375 Aerococcus urinaehominis species 0 84 128944 1 69 species Aerococcus sanguinicola 0 119206 1 1376 1 141 species Aerococcus urinae 0 Aerococcus christensenii species 0 101 87541 1 1 51665 150 0 Aerococcus urinaeequi species 1 1377 0 Aerococcus viridans species 104 8882 Streptococcaceae family 0 5 1300 49 1 1 5 1357 4 0 genus Lactococcus 2142 269 Lactococcus piscium species 0 1364 1 species Lactococcus raffinolactis 0 101 1366 1 0 species Lactococcus lactis 1540 1 1358 1 1363 228 0 species Lactococcus garvieae 6735 0 Streptococcus genus 65 43 1 1301 1 1335 0 Streptococcus equinus species 92 102684 1 166 Streptococcus infantarius species 0 Streptococcus sanguinis species 0 98 1305 1 1 1304 294 0 species Streptococcus salivarius 1 400065 0 species Streptococcus merionis 88 215 0 species Streptococcus mutans 1 1309 1814128 1 75 species Streptococcus halotolerans 0 species Streptococcus pseudopneumoniae 0 90 257758 1 238 0 Streptococcus gordonii species 1 1302 1311 1 341 Streptococcus agalactiae species 0 1307 1 species Streptococcus suis 0 430 1 1346 0 Streptococcus iniae species 158 28037 1 species Streptococcus mitis 0 224 620 0 no rank 7 2608887 1 1902136 0 species Streptococcus sp. NPS 308 57 1156433 1 Streptococcus sp. I-P16 species 0 84 79 species Streptococcus sp. oral taxon 431 0 712633 1 0 Streptococcus sp. A12 species 80 1 1759399 1156431 1 Streptococcus sp. I-G2 species 0 70 1 1839799 0 Streptococcus sp. FDAARGOS_192 species 79 Streptococcus sp. 'group B' species 0 171 1319 1 363 species Streptococcus pneumoniae 0 1313 1 1349 1 species Streptococcus uberis 0 150 315405 1 236 species Streptococcus gallolyticus 0 species Streptococcus cristatus 0 76 45634 1 1 59310 0 Streptococcus macedonicus species 130 1 1888195 0 species Streptococcus himalayensis 81 101 0 species Streptococcus parasanguinis 1 1318 219 0 species Streptococcus parauberis 1 1348 0 species group 364 2 119603 1 1334 0 Streptococcus dysgalactiae species 111 1 1336 0 Streptococcus equi species 253 1 1308 0 Streptococcus thermophilus species 170 0 species Streptococcus acidominimus 73 1 1326 0 species Streptococcus pyogenes 369 1 1314 1825069 1 94 Streptococcus marmotae species 0 500 0 species group 3 671232 238 0 species Streptococcus anginosus 1 1328 179 0 species Streptococcus intermedius 1 1338 0 Streptococcus constellatus species 83 1 76860 Streptococcus lutetiensis species 0 115 150055 1 species Streptococcus oralis 0 196 1303 1 197614 1 129 species Streptococcus pasteurianus 0 Streptococcus pantholopis species 0 74 1811193 1 82348 1 101 Streptococcus pluranimalium species 0 Clostridia class 0 50892 186801 1 186 62 order 0 275 485256 3 0 family Natranaerobiaceae 275 1 3 485255 3 genus Natranaerobius 0 272 375928 2 1 2 1 375929 0 species Natranaerobius thermophilus 270 2 2770089 250 0 order 2770092 1 170 family 0 1 499228 170 0 genus 170 Tepidanaerobacter acetatoxydans species 0 499229 1 2770093 1 80 family 0 291988 1 80 genus 0 1 291990 80 0 species Thermosediminibacter oceani order Thermoanaerobacterales 0 5422 68295 33 1 7 186814 16 1 5 family Thermoanaerobacteraceae 0 2706 1 9 1754 101 0 Thermoanaerobacter genus 2023 1 46354 0 Thermoanaerobacter wiegelii species 233 218 Thermoanaerobacter mathranii species 0 583357 1 493 0 no rank 2 2636821 399726 1 species Thermoanaerobacter sp. X514 0 252 241 species Thermoanaerobacter sp. X513 0 573062 1 1 108150 241 0 species Thermoanaerobacter italicus 496866 1 species Thermoanaerobacter pseudethanolicus 0 258 260 species Thermoanaerobacter brockii 0 29323 1 1 2325 219 0 Thermoanaerobacter kivui species 1 129957 167 0 genus 1 129958 167 0 Carboxydothermus hydrogenoformans species 42857 3 no rank 0 154 1 44260 2 1 83 genus Moorella 0 1525 1 82 Moorella thermoacetica species 0 71 genus 0 42837 1 0 species Ammonifex degensii 71 1 42838 249529 1 249 genus 0 species Caldanaerobacter subterraneus 0 249 911092 1 108 genus 0 140458 1 108 Thermacetogenium phaeum species 0 85874 1 54 0 family 1 543372 54 0 genus 1 252965 54 Mahella australiensis species 0 252966 1 271 family 0 227387 2 227388 2 1 1 genus Thermodesulfobium 0 271 1 184064 270 0 Thermodesulfobium narugense species 0 Thermoanaerobacterales Family III. Incertae Sedis family 2384 1 13 543371 4 28895 3 1 3 genus Thermoanaerobacterium 0 601 1 1517 0 Thermoanaerobacterium thermosaccharolyticum species 405 Thermoanaerobacterium xylanolyticum species 0 193 29329 1 18 1 9 44000 1779 0 Caldicellulosiruptor genus 52766 1 species Caldicellulosiruptor lactoaceticus 0 180 413889 1 267 Caldicellulosiruptor kronotskyensis species 0 species Caldicellulosiruptor bescii 0 229 31899 1 52765 1 species Caldicellulosiruptor kristjanssonii 0 201 413888 1 species Caldicellulosiruptor hydrothermalis 0 203 247 Caldicellulosiruptor saccharolyticus species 0 44001 1 0 species Caldicellulosiruptor owensensis 229 1 55205 205 Caldicellulosiruptor obsidiansis species 0 717609 1 11 53433 1 11 1857 Halanaerobiales order 0 1247 family Halanaerobiaceae 0 3 972 1 6 6 3 1 2330 1021 0 Halanaerobium genus 2331 1 560 species Halanaerobium praevalens 0 1 656519 455 0 species Halanaerobium hydrogeniformans 5 2 1 32636 223 0 Halothermothrix genus Halothermothrix orenii species 0 218 31909 1 599 family Halobacteroidaceae 0 1 53434 4 1 1 2 1 28186 202 0 Acetohalobium genus 1 28187 201 0 Acetohalobium arabaticum species 0 genus 396 1 42417 396 Halobacteroides halobius species 0 42422 1 43026 0 Clostridiales order 118 1 136 186802 family 0 67 990719 1 0 genus 67 1 990721 1805714 1 67 species Christensenella massiliensis 0 0 Peptostreptococcaceae family 2621 1 9 186804 3 genus 0 113 1481960 1 1731 1 113 species Peptoclostridium acidaminophilum 0 1 1 2 1870884 1186 0 Clostridioides genus 0 species Clostridioides difficile 1185 1 1496 1849828 1 594 genus 0 1 1505 0 Paeniclostridium sordellii species 594 2 2 1 44259 155 0 genus Filifactor 143361 1 153 species Filifactor alocis 0 385 0 genus 1 186831 385 0 Acetoanaerobium sticklandii species 1 1511 0 no rank 185 1 1411023 2081703 1 species Peptostreptococcaceae bacterium oral taxon 929 0 185 family Eubacteriaceae 0 543 186806 1 4 1 369 Eubacterium genus 0 5 1730 2 1 1736 1 Eubacterium limosum species 0 364 173 0 genus 1 33951 33952 1 species Acetobacterium woodii 0 173 538999 6 722 no rank 0 1392389 1 genus 0 169 1297617 1 169 species Intestinimonas butyriciproducens 0 543314 3 family 0 255 1 2 1 86331 132 0 genus Mogibacterium species Mogibacterium diversum 0 131 114527 1 [Eubacterium] sulci species 0 123 143393 1 176 family 0 539000 1 176 0 genus 1 73918 1 73919 0 Thermaerobacter marianensis species 176 2717089 1 genus 0 122 122 0 species Mordavella sp. Marseille-P3756 1 2086584 31984 1 148 family 0 1 2697 0 genus 148 35701 1 species Heliobacterium modesticaldum 0 148 4336 Lachnospiraceae family 0 7 186803 1 21 698776 1 genus 0 1016 1016 0 species Cellulosilyticum lentocellum 1 29360 no rank 0 226 186928 2 1 39491 125 0 [Eubacterium] rectale species 712991 1 Lachnospiraceae bacterium oral taxon 500 species 0 101 1 2719313 0 genus 171 171 [Clostridium] bolteae species 0 208479 1 1 2039240 170 0 genus 28446 1 170 Anaerotignum propionicum species 0 1506553 3 genus 0 538 130 0 no rank 1 2608895 130 Lachnoclostridium sp. YL32 species 0 1834196 1 1 1871021 82 0 Lachnoclostridium phocaeense species 1 66219 326 0 Lachnoclostridium phytofermentans species 1663717 1 genus 0 162 1 1679721 0 Herbinix luporum species 162 genus 0 258 572511 2 153 Blautia hansenii species 0 1322 1 2648079 1 105 no rank 0 105 0 species Blautia sp. YL58 1 1796616 genus Butyrivibrio 0 559 830 3 1 1 185008 1 268 species Butyrivibrio hungatei 0 43305 1 290 species Butyrivibrio proteoclasticus 0 269 genus 0 28050 1 [Eubacterium] eligens species 0 269 39485 1 0 genus 139 1 2719231 84030 1 139 species [Clostridium] saccharolyticum 0 0 genus 177 1 207244 0 species Anaerostipes hadrus 177 1 649756 560 0 genus 1 2569097 1 39488 560 0 [Eubacterium] hallii species 0 genus Roseburia 84 2 1 841 1 0 Roseburia hominis species 83 1 301301 1477 0 family 10 2304686 91 genus 0 1637257 1 0 species Mageeibacillus indolicus 91 1 884684 3 2304692 686 0 genus 0 species Herbivorax saccincola 255 1 1677857 1515 1 171 Ruminiclostridium thermocellum species 0 1 288965 260 0 [Clostridium] clariflavum species 2305130 1 no rank 0 73 73 Ruminiclostridium sp. KB18 species 0 1834198 1 8 1508657 1 2 177 genus Ruminiclostridium 0 1 1521 0 species [Clostridium] cellulolyticum 169 genus 0 112 2304691 1 1 1510 0 [Clostridium] stercorarium species 112 1 236752 0 genus 175 175 Fastidiosipila sanguinis species 0 236753 1 2304693 1 genus 0 163 163 [Clostridium] thermosuccinogenes species 0 84032 1 34 31979 41 1 28418 family Clostridiaceae 0 1 390805 2 1 258 genus Geosporobacter 0 1 1424294 0 species Geosporobacter ferrireducens 257 26628 genus Clostridium 0 134 1485 30 1 961 0 Clostridium baratii species 1 1561 species Clostridium formicaceticum 0 367 1497 1 29341 1 637 Clostridium argentinense species 0 992 species Clostridium butyricum 0 1492 1 1 1542 449 0 Clostridium novyi species species Clostridium ljungdahlii 0 504 1538 1 Clostridium bornimense species 0 640 1216932 1 1502 1 species Clostridium perfringens 0 1263 493 species Clostridium cochlearium 0 1494 1 1513 1 species Clostridium tetani 0 626 1509 1 species Clostridium sporogenes 0 628 1 1520 1391 0 Clostridium beijerinckii species 169679 1 species Clostridium saccharobutylicum 0 1502 84022 1 322 Clostridium aceticum species 0 1 1548 0 species Clostridium scatologenes 768 394958 1 species Clostridium taeniosporum 0 656 597 0 species Clostridium cellulovorans 1 1493 species Clostridium kluyveri 0 650 1534 1 84023 1 480 species Clostridium autoethanogenum 0 1501 1 Clostridium pasteurianum species 0 1236 535 0 species Clostridium chauvoei 1 46867 1 238834 0 Clostridium estertheticum species 574 1488 1 species Clostridium acetobutylicum 0 515 1 1491 0 Clostridium botulinum species 7144 0 no rank 264 2 2614128 196 Clostridium sp. BNL1100 species 0 755731 1 68 0 species Clostridium sp. SY8519 1 1042156 1519 1 410 Clostridium tyrobutyricum species 0 1071 species Clostridium saccharoperbutylacetonicum 0 36745 1 1 217159 819 0 Clostridium carboxidivorans species Mordavella genus 0 1 1981033 1 genus Alkaliphilus 0 610 114627 3 1 1 1 461876 0 species Alkaliphilus oremlandii 209 208226 1 400 species Alkaliphilus metalliredigens 0 15 49082 4 1 887 genus Candidatus Arthromitus 0 3 2638829 872 0 no rank 1 1508644 0 species Candidatus Arthromitus sp. SFB-mouse-NL 264 49118 1 260 Candidatus Arthromitus sp. SFB-mouse species 0 1041504 1 348 species Candidatus Arthromitus sp. SFB-rat-Yit 0 1 216572 0 family 141 genus 0 141 459786 1 141 0 Oscillibacter valericigenes species 1 351091 3092 family Peptococcaceae 0 8 186807 25 1 genus Desulfotomaculum 0 533 1562 1 5 3 1 59610 0 species Desulfotomaculum reducens 185 1565 1 120 Desulfotomaculum nigrificans species 0 1 1564 0 Desulfotomaculum ruminis species 111 Desulfotomaculum ferrireducens species 0 114 1833852 1 2 1 5 36853 635 0 genus Desulfitobacterium 1 233055 0 species Desulfitobacterium dichloroeliminans 146 164 0 Desulfitobacterium dehalogenans species 1 36854 1 142877 0 Desulfitobacterium metallireducens species 120 0 Desulfitobacterium hafniense species 203 1 49338 156 0 genus 1 2282742 58138 1 156 Desulfotomaculum acetoxidans species 0 51196 1 2 2 genus Syntrophobotulus 0 107 1 51197 105 0 species Syntrophobotulus glycolicus Dehalobacter genus 0 316 56112 1 4 6 55583 1 Dehalobacter restrictus species 0 88 2635733 2 222 no rank 0 1 1147129 110 0 species Dehalobacter sp. DCA 112 0 Dehalobacter sp. CF species 1 1131462 0 genus 216 1 2282740 1 102134 0 Desulfotomaculum gibsoniae species 216 103 0 genus 1 471826 Candidatus Desulforudis audaxviator species 0 103 471827 1 1 51514 0 genus 223 51515 1 223 species Dehalobacterium formicoaceticum 0 278993 1 genus 0 132 1 863643 132 0 species Thermincola potens 79206 3 663 genus 0 species Desulfosporosinus orientis 0 220 1563 1 1 885581 246 0 Desulfosporosinus acidiphilus species 79209 1 species Desulfosporosinus meridiei 0 197 198 Symbiobacteriaceae family 0 1 543349 2 1 1 2733 197 0 genus 1 2734 0 species Symbiobacterium thermophilum 197 275 0 Syntrophomonadaceae family 2 3 1 68298 1 129001 0 genus 84 84 species Syntrophothermus lipocalidus 0 86170 1 189 genus 0 862 1 1 863 189 0 Syntrophomonas wolfei species 870 0 Ruminococcaceae family 11 11 1 541000 no rank 0 55 2305133 1 1 1572656 55 0 Ruminococcaceae bacterium CPB6 species genus Herbivorax 0 1 1890281 1 0 genus 232 2 1263 1160721 1 117 Ruminococcus bicirculans species 0 115 Ruminococcus albus species 0 1264 1 176 0 genus Faecalibacterium 1 2 1 216851 0 Faecalibacterium prausnitzii species 175 1 853 1 253238 121 0 genus 253239 1 species Ethanoligenens harbinense 0 121 0 Flavonifractor genus 170 2 1 946234 2 292800 1 Flavonifractor plautii species 0 168 0 no rank 104 1 552397 29343 1 species [Clostridium] cellulosi 0 104 1 84086 411 0 no rank endosymbiont 'TC1' of Trimyema compressum species 0 411 243899 1 33974 1 no rank 0 54 1 1930845 54 0 genus 54 0 species Ndongobacter massiliensis 1 1871025 4 909932 1 27 2418 Negativicutes class 0 16 13 1 909929 1425 0 Selenomonadales order 1 4 1 1843490 699 0 family Sporomusaceae 4 1 3 365348 698 0 Pelosinus genus 1 365349 0 species Pelosinus fermentans 295 2629460 1 399 no rank 0 0 Pelosinus sp. UFO1 species 399 1 484770 710 family Selenomonadaceae 0 7 1843491 8 1 0 genus 231 1 158846 0 species Megamonas hypermegale 231 1 158847 8 970 6 1 472 Selenomonas genus 0 0 no rank 253 3 2637378 1 712538 81 0 Selenomonas sp. oral taxon 478 species species Selenomonas sp. oral taxon 920 0 75 1884263 1 97 0 Selenomonas sp. oral taxon 136 species 1 713030 122 species Selenomonas sputigena 0 69823 1 971 1 89 species Selenomonas ruminantium 0 4 1843488 0 order 195 0 family Acidaminococcaceae 195 4 1 909930 2 193 0 genus Acidaminococcus 1 3 1 904 187327 1 Acidaminococcus intestini species 0 79 113 0 species Acidaminococcus fermentans 1 905 1843489 1 9 7 order Veillonellales 0 794 787 family Veillonellaceae 0 4 31977 1 8 0 genus 69 1 909928 1702287 1 69 species Negativicoccus massiliensis 0 0 Veillonella genus 296 3 1 29465 2 0 species Veillonella parvula 226 1 29466 248315 1 species Veillonella rodentium 0 68 genus Megasphaera 0 253 906 1 2 1 1 907 252 0 species Megasphaera elsdenii 39948 1 genus 0 165 1 39950 0 Dialister pneumosintes species 165 0 class 171 3 1676648 1 1676649 3 1 171 order Limnochordales 0 170 0 family 2 1676650 0 genus Limnochorda 170 2 1 1676651 2 Limnochorda pilosa species 0 168 1555112 1 1297 33 phylum 0 4779 27 188787 1 33 4779 Deinococci class 0 3 2762275 217 0 order 217 0 Trueperaceae family 4 1 3 332247 213 Truepera genus 0 3 332248 2 1 332249 1 species Truepera radiovictrix 0 210 1 15 118964 25 0 order Deinococcales 2436 Deinococcaceae family 0 2411 183710 14 1 14 2397 Deinococcus genus 0 25 1298 13 1 0 Deinococcus maricopensis species 261 1 309887 502394 1 240 species Deinococcus gobiensis 0 290 0 species Deinococcus proteolyticus 1 55148 Deinococcus puniceus species 0 181 1182568 1 1299 1 Deinococcus radiodurans species 0 173 1309411 1 Deinococcus soli Cha et al. 2016 species 0 191 180 0 no rank 1 2623546 2080419 1 180 species Deinococcus sp. NW-56 0 1182571 1 216 species Deinococcus swuensis 0 1 1768108 0 Deinococcus actinosclerus species 192 68909 1 155 Deinococcus geothermalis species 0 species Deinococcus deserti 0 134 310783 1 432329 1 species Deinococcus peraridilitoris 0 159 14 14 1 68933 2099 0 Thermales order 2085 Thermaceae family 0 9 188786 1 13 2 65551 0 genus 317 277 1 196 species Meiothermus ruber 0 52022 1 species Meiothermus silvanus 0 121 220 genus 0 208447 1 187137 1 220 Oceanithermus profundus species 0 1 186191 143 0 genus 186192 1 143 species Marinithermus hydrothermalis 0 8 1 270 13 0 genus Thermus 1396 1 56957 0 species Thermus oshimai 200 1 37636 113 0 species Thermus scotoductus 1 456163 0 species Thermus parvatiensis 175 species Thermus aquaticus 0 160 271 1 1 56956 0 Thermus brockianus species 126 274 1 462 species Thermus thermophilus 0 147 0 no rank 1 2619321 147 0 species Thermus sp. CCB_US3_UF1 1 1111069 phylum 0 110 2138240 2 1 2138243 2 1 110 class Coprothermobacteria 0 109 0 order 1 2138246 1 2138247 0 family 109 68335 1 109 genus 0 35786 1 species Coprothermobacter proteolyticus 0 109 1 20 1 57723 1954 0 Acidobacteria phylum 1 16 204432 8 0 Acidobacteriia class 1767 4 1 332160 2 0 Solibacterales order 396 394 Solibacteraceae family 0 5 332161 1 3 6 1 2 332162 389 0 Candidatus Solibacter genus 383 0 Candidatus Solibacter usitatus species 1 332163 1363 0 Acidobacteriales order 13 11 1 204433 8 1 10 204434 1350 0 family Acidobacteriaceae 658061 2 1 2 genus Candidatus Koribacter 0 197 1 658062 195 0 species Candidatus Koribacter versatilis 940557 1 3 9 Granulicella genus 0 468 275 0 species Granulicella tundricola 1 940615 184 Granulicella mallensis species 0 940614 1 329 genus Terriglobus 0 1 392733 3 1 195 0 Terriglobus saanensis species 1 870903 0 species Terriglobus roseus 133 1 392734 genus 0 348 33973 1 1 33075 348 0 species Acidobacterium capsulatum class Blastocatellia 0 186 1562566 1 3 3 183 0 Chloracidobacterium genus 2 1 2 458032 1 458033 181 0 Chloracidobacterium thermophilum species 2 68297 489 0 phylum 2 203486 489 0 class 203487 2 489 order 0 0 family 489 2 203488 489 genus 0 13 2 513050 1 species Dictyoglomus turgidum 0 244 species Dictyoglomus thermophilum 0 245 14 1 200938 4 127 phylum 0 class 0 127 118001 4 order Chrysiogenales 0 127 189769 1 4 1 126 0 Chrysiogenaceae family 2 1 3 189770 393029 2 1 1 Desulfurispirillum genus 0 124 1 936456 0 Desulfurispirillum indicum species 123 200918 41 4397 phylum 0 3 188708 41 1 4397 class Thermotogae 0 7 28 1 2419 2628 0 Thermotogales order 2 1 17 188709 976 0 Thermotogaceae family 0 genus Thermotoga 526 1 11 2335 15 41 Thermotoga petrophila species 0 93929 1 44 Thermotoga naphthophila species 0 93930 1 1 2336 58 0 species Thermotoga maritima 2631113 4 163 no rank 0 37 0 species Thermotoga sp. RQ2 1 126740 1 126738 37 0 Thermotoga sp. RQ7 species Thermotoga sp. 2812B species 0 52 1157948 1 Thermotoga sp. Cell2 species 0 37 1157947 1 1 1508420 121 0 Thermotoga profunda species 0 Thermotoga neapolitana species 42 1 2337 1 1508419 42 0 Thermotoga caldifontis species 6 1643951 1 5 448 genus Pseudothermotoga 0 57487 1 Pseudothermotoga hypogea species 0 46 134 species Pseudothermotoga elfii 0 38322 1 1 177758 0 Pseudothermotoga lettingae species 128 species Pseudothermotoga thermarum 0 134 119394 1 10 1 1643950 2 0 family Fervidobacteriaceae 1645 1144 0 Thermosipho genus 6 5 1 2420 2 2676525 482 0 no rank 1 1462747 231 0 Thermosipho sp. 1063 species 251 0 Thermosipho sp. 1070 species 1 1437364 302 0 Thermosipho melanesiensis species 1 46541 species Thermosipho africanus 0 354 2421 1 2422 1 4 4 Fervidobacterium genus 0 499 224 0 species Fervidobacterium nodosum 1 2424 85 0 species Fervidobacterium islandicum 1 2423 0 Fervidobacterium pennivorans species 186 1 93466 0 order Petrotogales 1412 7 1 1643947 8 family 0 1404 1643949 6 260 genus 0 28236 1 1 69499 0 Petrotoga mobilis species 260 2 1 2 1511648 337 0 Defluviitoga genus 1006576 1 species Defluviitoga tunisiensis 0 335 3 3 1 160798 807 0 genus Marinitoga 399 0 no rank 1 2640159 1 1545835 399 0 species Marinitoga sp. 1137 1 149715 405 0 Marinitoga piezophila species 354 order 0 1643946 5 1 5 1643948 1 0 Kosmotogaceae family 354 1 1184396 79 0 genus 1 1184387 0 Mesotoga prima species 79 3 3 1 651456 274 0 Kosmotoga genus Kosmotoga pacifica species 0 179 1330330 1 0 Kosmotoga olearia species 92 1 651457 1245 0 phylum 13 40117 class Nitrospira 0 1245 203693 1 13 8 1 12 189778 15 0 order Nitrospirales 1237 189779 11 1 7 family Nitrospiraceae 0 1222 494 0 genus Nitrospira 5 5 1 1234 1 330214 0 Nitrospira defluvii species 114 1 1325564 0 species Nitrospira japonica 96 Nitrospira moscoviensis species 0 185 42253 1 94 Candidatus Nitrospira inopinata species 0 1715989 1 3 179 0 genus 269 261385 1 species group 0 72 1 1660083 0 Leptospirillum sp. Group II 'CF-1' species 72 79 0 species group 1 261386 178606 1 79 species Leptospirillum ferriphilum 0 species group 0 118 655606 1 118 species Leptospirillum ferrooxidans 0 180 1 1 28261 1 2 452 genus Thermodesulfovibrio 0 451 Thermodesulfovibrio yellowstonii species 0 28262 1 200783 24 phylum 0 2728 1 187857 24 1 2728 class Aquificae 0 439 0 Desulfurobacteriales order 2 4 1 1485951 437 Desulfurobacteriaceae family 0 1 558314 3 1 1 171868 0 genus 59 0 species Thermovibrio ammonificans 59 1 228745 377 0 genus 1 64159 Desulfurobacterium thermolithotrophum species 0 377 64160 1 0 order Aquificales 2288 1 19 32069 3 Hydrogenothermaceae family 0 1113 224027 1 5 1 885 0 genus Sulfurihydrogenibium 11 1 3 212790 no rank 0 491 2619248 1 0 Sulfurihydrogenibium sp. YO3AOP1 species 491 1 436114 1 309806 0 species Sulfurihydrogenibium azorense 383 1 182899 227 0 genus 309805 1 Persephonella marina species 0 227 1 64898 11 1 1075 family Aquificaceae 0 69 genus 0 939 1 0 species Hydrogenobacter thermophilus 69 1 940 75905 2 genus 0 112 1 136094 65 0 species Thermocrinis albus 75906 1 species Thermocrinis ruber 0 47 1 2713 70 0 genus 63363 1 Aquifex aeolicus species 0 70 33 6 1 168657 823 0 genus Hydrogenobaculum no rank 0 790 2622382 5 157 Hydrogenobaculum sp. HO species 0 547144 1 species Hydrogenobaculum sp. SHO 0 157 547145 1 547143 1 157 species Hydrogenobaculum sp. 3684 0 547146 1 158 species Hydrogenobaculum sp. SN 0 161 Hydrogenobaculum sp. Y04AAS1 species 0 380749 1 2 90150 0 no rank 97 1 2 412592 2 0 Thermosulfidibacter genus 97 0 species Thermosulfidibacter takaii 95 1 412593 9 1 74152 3 0 phylum Elusimicrobia 502 119 class 0 641853 3 0 Elusimicrobiales order 119 1 3 641854 2 117 0 Elusimicrobiaceae family 1 2 1 641876 1 423604 116 0 genus 423605 1 Elusimicrobium minutum species 0 116 99260 1 no rank 0 116 116 species uncultured Termite group 1 bacterium 0 167965 1 264 class 0 447830 4 264 0 order 4 1783344 1 4 1783343 2 0 Endomicrobiaceae family 264 1408194 3 1 2 Endomicrobium genus 0 262 1 1408281 154 0 Endomicrobium proavitum species 1 1408204 106 0 species Candidatus Endomicrobium trichonymphae 358 1783270 0 clade 93721 537 0 phylum 3 65842 537 0 class 3 204430 0 Fibrobacterales order 537 1 3 218872 2 535 0 family Fibrobacteraceae 2 2 1 204431 1 832 0 genus 533 533 species Fibrobacter succinogenes 0 833 1 265 phylum 0 456828 1 265 0 genus 1 456826 265 0 species Candidatus Cloacimonas acidaminovorans 1 456827 68336 347 clade 0 91438 6 1134404 772 0 phylum 0 class Ignavibacteria 772 6 1 795747 2 770 order Ignavibacteriales 0 6 795748 1 5 2 1334117 0 family 165 2 1134403 2 1 165 genus Melioribacter 0 1 1134405 0 Melioribacter roseus species 163 2 2 1 795749 599 0 family Ignavibacteriaceae 795750 1 597 genus 0 591197 1 Ignavibacterium album species 0 597 88422 phylum Bacteroidetes 0 13 976 320 1 class 0 725 1937959 7 725 0 Saprospirales order 1 7 1 1936988 519 0 Haliscomenobacteraceae family 1 3 1 1937961 518 0 genus Haliscomenobacter 6 1 2 2349 512 0 Haliscomenobacter hydrossis species 1 2350 89374 1 3 1 family Saprospiraceae 0 205 3 1007 1 2 204 Saprospira genus 0 1 1008 0 Saprospira grandis species 201 1853228 14 1 12 class Chitinophagia 0 2424 7 1853229 13 1 2412 Chitinophagales order 0 14 1 12 563835 2405 0 family Chitinophagaceae 379899 3 1 4 genus Niabella 0 275 1176587 1 species Niabella ginsenosidivorans 0 122 1 446683 0 Niabella soli species 149 381 0 genus 1 398041 1492898 1 381 species Flavisolibacter tropicus 0 genus 0 463 79328 2 species Chitinophagaceae bacterium 13 0 232 2029983 1 1 79329 231 0 species Chitinophaga pinensis 0 Niastella genus 684 2 1 354354 3 1 354356 681 0 Niastella koreensis species Arachidicoccus genus 0 386 1769012 1 2 2 384 0 no rank 1 2636138 0 Arachidicoccus sp. BS20 species 384 1 1850526 genus 0 202 649460 1 202 0 Filimonas lacunae species 1 477680 13718 0 class Cytophagia 14 60 1 768503 52 768507 1 59 13704 Cytophagales order 0 336 0 Amoebophilaceae family 7 5 1 1501348 0 Candidatus Cardinium genus 137 2 1 273135 1 2641185 1 no rank 0 136 249402 1 species Cardinium endosymbiont of Encarsia pergandiella 0 136 192 genus Candidatus Amoebophilus 0 5 281119 2 1 281120 1 187 Candidatus Amoebophilus asiaticus species 0 2644 0 family Cytophagaceae 8 16 1 89373 319458 2 1 3 genus Leadbetterella 0 237 1 316068 234 0 Leadbetterella byssophila species 120831 2 1 3 Dyadobacter genus 0 262 259 0 Dyadobacter fermentans species 1 94254 105 1 440 genus 0 106 1 440 Runella slithyformis species 0 861914 1 2 1 genus Fibrella 0 143 1 2620963 142 0 no rank 1834519 1 142 species Fibrella sp. ES10-3-2-2 0 0 genus Spirosoma 1181 1 6 107 5 species Spirosoma rigui 0 160 564064 1 267 0 Spirosoma aerolatum species 1 1211326 0 Spirosoma radiotolerans species 266 1 1379870 Spirosoma montaniterrae species 0 203 1178516 1 species Spirosoma sp. HA7 0 280 2057025 1 373 genus Cytophaga 0 5 978 1 2 species Cytophaga hutchinsonii 0 368 985 1 2 1937968 736 0 family 4 1 2 1937972 736 0 Bernardetia genus 999 1 732 Bernardetia litoralis species 0 10 1 563798 2 0 family Cyclobacteriaceae 1700 1 2 390846 9 0 Echinicola genus 243 species Echinicola vietnamensis 0 234 390884 1 8 232244 2 1 483 Belliella genus 0 Belliella baltica species 0 475 232259 1 1 2 246875 1 0 genus Algoriphagus 261 species Algoriphagus sp. M8-2 0 260 1727163 1 68288 3 1 5 Cyclobacterium genus 0 711 340 0 species Cyclobacterium marinum 1 104 320787 1 366 species Cyclobacterium amurskyense 0 3714 0 family Flammeovirgaceae 5 4 1 200667 1 340671 0 no rank 2658 0 Flammeovirgaceae bacterium 311 species 2658 1 1257021 59739 1 2 1 genus Flammeovirga 0 1051 no rank 0 1050 2637820 1 0 Flammeovirga sp. MY04 species 1050 1 1191459 627 0 family 2 2762301 genus Marivirga 0 627 869806 1 2 8 1 1006 619 0 Marivirga tractuosa species Hymenobacteraceae family 0 3491 1853232 1 16 12 391 0 Pontibacter genus 2 1 3 323449 388950 1 183 species Pontibacter akesuensis 0 400092 1 species Pontibacter korlensis 0 206 797 0 genus Rufibacter 5 1 4 1379908 2639626 2 no rank 0 522 1379909 1 Rufibacter sp. DG15C species 0 223 299 0 Rufibacter sp. DG31D species 1 1379910 512763 1 270 species Rufibacter tibetensis 0 8 1 89966 13 0 Hymenobacter genus 2291 1 1411621 0 Hymenobacter sedentarius species 355 299 species Hymenobacter swuensis 0 1446467 1 1624 no rank 0 2615202 5 204 species Hymenobacter sp. DG25B 0 1385664 1 426 0 Hymenobacter sp. PAMC 26628 species 1 1484118 1484116 1 504 Hymenobacter sp. PAMC 26554 species 0 1385663 1 species Hymenobacter sp. DG25A 0 149 1 1356852 341 0 Hymenobacter sp. APR13 species family Persicobacteraceae 0 404 1853234 1 3 1 2 1 2 59740 403 0 Persicobacter genus no rank 0 401 2664020 1 1085624 1 Persicobacter sp. JZB09 species 0 401 7523 Bacteroidia class 0 11 200643 1 64 1970189 1 11 3 Marinilabiliales order 0 1446 2 1970190 1 3 288 Salinivirgaceae family 0 2 1 1970191 1 0 genus Salinivirga 286 1 1307839 285 0 species Salinivirga cyanobacteriivorans 1573805 1 family 0 428 428 0 genus 1 2060722 species Marinifilaceae bacterium SPP2 0 428 1717717 1 2 3 1 1471398 371 0 family Prolixibacteraceae genus Draconibacterium 0 369 1471399 2 1 7 362 0 Draconibacterium orientale species 1 1168034 356 Marinilabiliaceae family 0 3 558415 1 3 0 Alkalitalea genus 353 1 2 1193324 2 889453 1 species Alkalitalea saponilacus 0 351 6066 Bacteroidales order 0 37 171549 52 1 1071 0 no rank 4 333046 909656 3 598 genus 0 0 Bacteroides salanitronis species 305 1 376805 164 0 species Bacteroides dorei 1 357276 0 species Bacteroides vulgatus 129 1 821 511434 1 genus 0 473 species Candidatus Azobacteroides pseudotrichonymphae 0 473 511435 1 468 family 0 2005520 5 2 1 1784836 2 0 genus Fermentimonas 210 1562970 1 208 species Fermentimonas caenicola 0 1 2 294702 3 0 genus Proteiniphilum 152 149 Proteiniphilum saccharofermentans species 0 1642647 1 307628 1 genus 0 106 1 1642646 106 0 Petrimonas mucosa species 551 family Tannerellaceae 0 2 2005525 1 7 1 3 1 195950 252 0 Tannerella genus 0 no rank 144 1 2620507 144 species Tannerella sp. oral taxon HOT-286 0 712710 1 species Tannerella forsythia 0 107 28112 1 2 375288 3 1 297 genus Parabacteroides 0 139 Parabacteroides distasonis species 0 823 1 0 no rank 156 1 2649774 0 species Parabacteroides sp. CT06 156 1 2025876 family Barnesiellaceae 0 80 2005519 3 1 3 77 0 Barnesiella genus 1 1 2 397864 397865 1 Barnesiella viscericola species 0 76 1 1 4 171551 243 0 Porphyromonadaceae family 836 1 3 2 Porphyromonas genus 0 242 1 28123 79 0 species Porphyromonas asaccharolytica 1 837 0 species Porphyromonas gingivalis 161 177 0 family 2 1853231 1 1 2 283168 177 0 genus Odoribacter 1 28118 176 0 Odoribacter splanchnicus species 1 2005523 327 0 family 346096 1 genus 0 327 0 Paludibacter propionicigenes species 327 1 185300 1 11 171552 3 0 Prevotellaceae family 1243 1 10 838 3 0 genus Prevotella 1240 86 0 Prevotella fusca species 1 589436 1 839 0 species Prevotella ruminicola 149 147 0 Prevotella dentalis species 1 52227 96 species Prevotella melaninogenica 0 28132 1 356 Prevotella intermedia species 0 28131 1 1 1177574 127 0 species Prevotella jejuni 2638335 1 113 no rank 0 113 Prevotella sp. oral taxon 299 species 0 652716 1 1 76123 100 0 Prevotella enoeca species 1 28129 0 species Prevotella denticola 63 0 Bacteroidaceae family 1466 11 1 815 10 9 816 10 1 1456 genus Bacteroides 0 Bacteroides ovatus species 0 174 28116 1 290053 1 Bacteroides helcogenes species 0 124 817 1 285 species Bacteroides fragilis 0 1796613 1 119 species Bacteroides caecimuris 0 1 28119 0 Bacteroides zoogleoformans species 96 1 818 0 species Bacteroides thetaiotaomicron 202 246787 1 species Bacteroides cellulosilyticus 0 200 0 species Bacteroides heparinolyticus 153 1 28113 species Bacteroides caccae 0 94 47678 1 142 0 no rank 1 185291 1400053 1 species Bacteroidales bacterium CF 0 142 171550 2 family 0 261 1611681 1 genus 0 97 species Mucinivorans hirudinis 0 97 1433126 1 239759 1 genus 0 164 164 Alistipes finegoldii species 0 214856 1 1100069 1 6 5 Bacteroidetes Order II. Incertae sedis order 0 980 3 5 1 563843 975 0 Rhodothermaceae family 1 29548 1 2 300 genus Rhodothermus 0 Rhodothermus marinus species 0 299 29549 1 1 1196022 0 no rank 422 1779382 1 422 Rhodothermaceae bacterium RA species 0 250 genus 0 146918 1 1 146919 0 species Salinibacter ruber 250 57428 0 Flavobacteriia class 46 144 1 117743 0 order Flavobacteriales 57382 1 143 200644 86 46104 Flavobacteriaceae family 0 218 49546 1 104 2405 genus Lacinutrix 0 20 291183 1 4 no rank 0 1545 2647285 2 1 983544 789 0 species Lacinutrix sp. 5H-3-7-4 2057808 1 species Lacinutrix sp. Bg11-31 0 756 1 1486034 0 Lacinutrix venerupis species 840 731 0 Olleya genus 1 2 1 336276 1 2615019 0 no rank 730 2058135 1 species Olleya sp. Bg11-27 0 730 2 225842 0 genus 1200 2 2644710 0 no rank 1200 1336795 1 species Formosa sp. Hel3_A1_48 0 644 1336794 1 species Formosa sp. Hel1_33_131 0 556 5716 Flavobacterium genus 0 10 237 9 1 704 species Flavobacterium indicum 0 312277 1 96345 1 586 species Flavobacterium psychrophilum 0 1306519 1 486 Flavobacterium commune species 0 554 Flavobacterium branchiophilum species 0 55197 1 species Flavobacterium crassostreae 0 427 1763534 1 1 996 1055 0 Flavobacterium columnare species 1492737 1 Flavobacterium gilvum species 0 539 Flavobacterium johnsoniae species 0 1355 986 1 3592 genus Capnocytophaga 0 23 1016 1 15 1 1848904 0 Capnocytophaga stomatis species 311 2640652 6 no rank 0 1304 1 209053 0 Capnocytophaga sp. ChDC OS43 species 229 230 Capnocytophaga sp. H2931 species 0 1945657 1 242 0 species Capnocytophaga sp. oral taxon 878 1 1316596 262 0 Capnocytophaga sp. H4358 species 1 1945658 1 1316593 0 Capnocytophaga sp. oral taxon 864 species 172 1 1705617 0 species Capnocytophaga sp. oral taxon 323 169 1 1019 0 species Capnocytophaga sputigena 528 1 28189 0 species Capnocytophaga cynodegmi 298 0 species Capnocytophaga haemolytica 165 1 45243 200 Capnocytophaga ochracea species 0 1018 1 species Capnocytophaga gingivalis 0 195 1017 1 409 0 Capnocytophaga canimorsus species 1 28188 159 Capnocytophaga leadbetteri species 0 327575 1 4716 0 Polaribacter genus 43 6 1 52959 0 Polaribacter vadi species 1078 1 1774273 196858 3 no rank 0 2543 958 species Polaribacter sp. BM10 0 1529069 1 313598 1 892 Polaribacter sp. MED152 species 0 693 0 Polaribacter sp. ALD11 species 1 2058137 996801 1 1052 Polaribacter reichenbachii species 0 0 genus 298 1 1176327 298 0 no rank 1 2636237 298 Aureitalea sp. RR4-38 species 0 2094025 1 1 143222 0 genus 490 no rank 0 490 2633436 1 490 0 species Salegentibacter sp. T436 1 1729720 0 genus 618 1 1209327 1 1803846 0 species Flavivirga eckloniae 618 Maribacter genus 0 2257 252356 5 1 18 no rank 0 1900 2615042 3 313603 1 533 Maribacter sp. HTCC2170 species 0 1 1836467 565 0 Maribacter sp. T28 species 0 species Maribacter sp. 1_2014MBL_MicDiv 802 1 1644130 0 Maribacter cobaltidurans species 339 1 1178778 331 0 genus 1 389486 2648869 1 331 no rank 0 1453352 1 331 Sediminicola sp. YIK13 species 0 no rank 0 892 61432 2 1 531844 196 0 Flavobacteriaceae bacterium 3519-10 species 1150389 1 696 species Flavobacteriaceae bacterium UJ101 0 1 1204360 1 2 657 genus Siansivirga 0 656 Siansivirga zeaxanthinifaciens species 0 762954 1 417127 1 931 genus 0 1 398743 931 0 Zunongwangia profunda species 2 2 1 358023 944 0 Lutibacter genus 1 1622118 942 0 species Lutibacter profundi 216431 1 557 genus 0 1 313588 557 0 Croceibacter atlanticus species 393005 1 genus 0 593 2069432 1 species Tamlana sp. UJ94 0 593 205 0 Robiginitalea genus 2 1 2 252306 Robiginitalea biformata species 0 203 252307 1 363408 5 1 39 Nonlabens genus 0 1995 1 319236 430 0 species Nonlabens sediminis 542 0 species Nonlabens dokdonensis 1 328515 984 no rank 0 2615035 2 0 Nonlabens sp. MB-3u-79 species 497 1 2058134 Nonlabens sp. MIC269 species 0 487 1476901 1 27 1 5 76831 1413 0 Myroides genus 2642485 2 no rank 0 664 1 1458492 332 0 Myroides sp. ZB35 species 332 0 Myroides sp. A21 species 1 1583100 Myroides profundi species 0 355 480520 1 1 76832 0 Myroides odoratimimus species 367 178469 1 2 2 genus Arenibacter 0 534 616991 1 532 species Arenibacter algicola 0 1 261827 830 0 genus 1 1736674 0 Algibacter alginicilyticus species 830 962 genus 0 2700084 1 1850246 1 962 Lutibacter sp. LPB0138 species 0 0 Tenacibaculum genus 2953 5 1 104267 5 1 669041 0 species Tenacibaculum dicentrarchi 654 0 Tenacibaculum maritimum species 574 1 107401 0 Tenacibaculum jejuense species 944 1 584609 1 1850252 776 0 Tenacibaculum todarodis species 668 genus 0 1518147 1 668 species Wenyingzhuangia fucanilytica 0 1790137 1 761 genus Seonamhaeicola 0 1 1649495 2 1 2622645 1 760 no rank 0 1936081 1 760 species Seonamhaeicola sp. S2-3 0 1 4 104264 8 0 Cellulophaga genus 2213 763 0 Cellulophaga baltica species 1 76594 59600 1 species Cellulophaga algicola 0 654 979 1 788 Cellulophaga lytica species 0 1585 0 Winogradskyella genus 2 3 1 286104 1583 0 no rank 2 2615021 708 species Winogradskyella sp. J14-2 0 1936080 1 754409 1 Winogradskyella sp. PG-2 species 0 875 1408 0 Dokdonia genus 10 4 1 326319 811 0 no rank 2 2615033 0 species Dokdonia sp. MED134 390 1 313590 983548 1 421 Dokdonia sp. 4H-3-7-5 species 0 0 species Dokdonia donghaensis 587 1 326320 153265 1 genus 0 494 1 101385 0 Aequorivita sublithincola species 494 2 1 112040 1 0 genus Zobellia 260 63186 1 259 Zobellia galactanivorans species 0 0 genus 565 1 83612 1 57029 0 Psychroflexus torquis species 565 genus Muricauda 0 599 111500 3 1 5 0 species Muricauda lutaonensis 221 1 516051 0 species Muricauda ruestringensis 373 1 111501 genus Gramella 0 1513 292691 1 5 7 2126553 1 390 species Gramella sp. SH35 0 Gramella sp. LPB0144 species 0 405 1913577 1 411153 1 436 Gramella forsetii species 0 1486245 1 275 Gramella flava species 0 0 family 338 1 1853230 332102 1 338 genus 0 1 191579 0 species Fluviicola taffensis 338 3 39782 1 10 2023 family Blattabacteriaceae 0 20 9 1 34098 2020 0 genus Blattabacterium 1415 0 no rank 6 2647581 220 Blattabacterium sp. (Periplaneta americana) species 0 367488 1 226 species Blattabacterium sp. (Mastotermes darwiniensis) 0 39768 1 624186 1 249 Blattabacterium sp. (Blattella germanica) species 0 0 Blattabacterium sp. (Blaberus giganteus) species 259 1 1186051 0 Blattabacterium sp. (Nauphoeta cinerea) species 249 1 1316444 367806 1 212 species Blattabacterium sp. (Blatta orientalis) 0 1 164514 0 Blattabacterium punctulatus species 293 1 1653831 292 0 species Blattabacterium cuenoti 0 family 7380 19 2762318 2782232 10 3759 no rank 0 0 Chryseobacterium genus 3566 9 1 59732 26 1 1265445 0 species Chryseobacterium camelliae 171 1 253 0 Chryseobacterium indologenes species 710 1 1324352 269 0 Chryseobacterium gallinarum species 1 558152 400 0 Chryseobacterium piperi species no rank 0 1180 2593645 3 404 0 species Chryseobacterium sp. StRB126 1 878220 424 0 Chryseobacterium sp. T16E-39 species 1 2015076 1 1721091 0 Chryseobacterium sp. IHB B 17019 species 352 1 1685010 0 Chryseobacterium glaciei species 810 193 genus 0 2782228 1 0 Chryseobacterium taklimakanense species 193 1 536441 18 308865 6 1 2549 genus Elizabethkingia 0 0 Elizabethkingia genomosp. 3 species 419 1 1756149 528 species Elizabethkingia miricola 0 172045 1 1 1756150 308 0 species Elizabethkingia genomosp. 4 0 Elizabethkingia meningoseptica species 390 1 238 0 Elizabethkingia anophelis species 886 1 1117645 0 genus 552 1 34084 552 species Riemerella anatipestifer 0 34085 1 0 genus 234 1 1013 1 1014 0 species Weeksella virosa 234 1 28250 286 0 genus 1 28251 0 Ornithobacterium rhinotracheale species 286 313602 3 771 no rank 0 1940138 1 genus 0 135 1 1415657 135 0 Candidatus Walczuchella monophlebidarum species 0 genus Candidatus Sulcia 636 1 2 336809 5 336810 1 631 Candidatus Sulcia muelleri species 0 family 0 354 1333713 2 genus Owenweeksia 0 354 267986 1 2 11 253245 1 343 Owenweeksia hongkongensis species 0 2 1755828 324 0 family 4 1755829 2 1 324 Ichthyobacterium genus 0 0 species Ichthyobacterium seriolicida 320 1 242600 2 Cryomorphaceae family 0 246874 1 5611 0 class Sphingobacteriia 13 24 1 117747 11 1 23 200666 5598 0 order Sphingobacteriales 5587 family Sphingobacteriaceae 0 13 84566 22 1 804 0 no rank 1 84568 1 1986952 0 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 804 84567 1 6 10 Pedobacter genus 0 1828 species Pedobacter steynii 0 269 430522 1 1 188932 0 Pedobacter cryoconitis species 477 984 1 Pedobacter heparinus species 0 317 2628915 1 398 no rank 0 398 species Pedobacter sp. PACM 27299 0 1727164 1 357 0 species Pedobacter ginsengisoli 1 363852 0 Solitalea genus 371 1 2 929509 1 370 Solitalea canadensis species 0 995 1 genus Mucilaginibacter 0 885 423349 4 1 8 182 no rank 0 2617802 1 1 1300914 182 0 Mucilaginibacter sp. PAMC 26640 species 1 1550579 420 0 Mucilaginibacter gotjawali species 0 species Mucilaginibacter sp. BJC16-A31 275 1 1234841 genus Sphingobacterium 0 1360 28453 1 6 6 no rank 0 1089 2609468 4 1 1933220 229 0 species Sphingobacterium sp. B29 species Sphingobacterium sp. 21 0 246 743722 1 1538644 1 Sphingobacterium sp. ML3W species 0 351 Sphingobacterium sp. G1-14 species 0 263 2003121 1 1010 1 265 species Sphingobacterium mizutaii 0 326 Pseudopedobacter genus 0 1 1649482 1 2 0 species Pseudopedobacter saltans 325 1 151895 0 phylum 2244 21 1090 Chlorobia class 0 2244 191410 21 1 13 16 191411 1 20 2231 order Chlorobiales 0 0 Chlorobiaceae family 2215 1 19 191412 5 100715 1 genus 0 168 100716 1 168 Chloroherpeton thalassium species 0 23 1 4 256319 363 0 Chlorobaculum genus 111 species Chlorobaculum tepidum 0 1097 1 1 274539 0 Chlorobaculum parvum species 108 121 0 Chlorobaculum limnaeum species 1 274537 274493 8 no rank 0 1183 1099 1 3 1 genus Pelodictyon 0 218 123 0 species Pelodictyon phaeoclathratiforme 1 34090 94 species Pelodictyon luteolum 0 1100 1 0 Chlorobium genus 965 5 1 1091 19 species Chlorobium limicola 0 205 1092 1 Chlorobium phaeobacteroides species 0 526 1096 1 0 species Chlorobium chlorochromatii 121 1 337090 1 1094 94 0 Chlorobium phaeovibrioides species genus Prosthecochloris 0 496 1101 1 5 25 0 species Prosthecochloris aestuarii 101 1 1102 3 2632826 0 no rank 370 1 1974213 0 Prosthecochloris sp. HL-130-GSB species 124 1 281093 118 0 species Prosthecochloris sp. GSB1 128 0 Prosthecochloris sp. CIB 2401 species 1 1868325 142182 7 phylum 0 1481 0 class 1481 7 219685 Gemmatimonadales order 0 1481 219686 7 1 15 6 1 219687 13 0 family Gemmatimonadaceae 1466 518 0 Gemmatimonas genus 5 3 1 173479 221 species Gemmatimonas phototrophica 0 1379270 1 0 species Gemmatimonas aurantiaca 292 1 173480 0 Gemmatirosa genus 935 2 1 1706036 3 species Gemmatirosa kalamazoonesis 0 932 861299 1 9626 0 phylum 54 203691 9626 Spirochaetia class 0 15 203692 1 54 1994 0 Brachyspirales order 4 1 6 1643686 5 143786 0 family 1990 12 29521 1 5 1990 Brachyspira genus 0 0 species Brachyspira intermedia 451 1 84377 1 159 521 0 Brachyspira hyodysenteriae species 52584 1 600 Brachyspira pilosicoli species 0 Brachyspira murdochii species 0 406 84378 1 1437 0 order 8 1643688 Leptospiraceae family 0 1437 170 8 1 12 135 genus 0 338321 1 species Turneriella parva 0 135 29510 1 6 1 171 12 0 Leptospira genus 1290 160 species Leptospira alstonii 0 28452 1 1 173 0 Leptospira interrogans species 488 1 172 254 0 species Leptospira biflexa 0 Leptospira borgpetersenii species 235 1 174 141 0 Leptospira santarosai species 1 28183 6180 0 Spirochaetales order 29 39 1 136 0 Spirochaetaceae family 2570 1 21 137 25 1911556 1 157 genus 0 55206 1 Sediminispirochaeta smaragdinae species 0 157 1616789 1 499 genus 0 0 Salinispira pacifica species 499 1 1307761 8 12 1 157 1250 0 Treponema genus 215591 1 123 species Treponema caldarium 0 0 Treponema azotonutricium species 99 1 150829 0 Treponema pallidum species 70 1 160 136 0 Treponema putidum species 1 221027 1 81028 0 Treponema brennaborense species 73 species Treponema primitia 0 180 88058 1 1 158 0 Treponema denticola species 104 83 species Treponema paraluiscuniculi 0 53435 1 409322 1 Treponema pedis species 0 151 1 2638727 100 0 no rank 0 Treponema sp. OMZ 838 species 100 1 1539298 123 Treponema succinifaciens species 0 167 1 genus 0 359 146 2 46355 1 151 species Spirochaeta africana 0 154 1 208 Spirochaeta thermophila species 0 0 genus Sphaerochaeta 280 1 4 399320 1 0 Sphaerochaeta pleomorpha species 72 1 1131707 species Sphaerochaeta globosa 0 77 1131703 1 130 Sphaerochaeta coccoides species 0 273376 1 0 family Borreliaceae 3581 1 17 1643685 7 1966 Borrelia genus 0 45 138 1 8 1 140 0 species Borrelia hermsii 164 40834 1 species Borrelia duttonii 0 659 0 Borrelia anserina species 139 1 143 237 Borrelia recurrentis species 0 44449 1 391 0 species Borrelia miyamotoi 1 47466 1 141 145 0 species Borrelia parkeri 1 142 0 species Borrelia turicatae 186 1 8 64895 100 0 Borreliella genus 1608 1 139 263 0 species Borreliella burgdorferi 192 species Borreliella bavariensis 0 664662 1 1674146 1 Borrelia mayonii species 0 214 125 0 Borreliella valaisiana species 1 62088 Borreliella afzelii species 0 170 29518 1 Borreliella bissettii species 0 210 64897 1 334 0 species Borreliella garinii 1 29519 701298 Proteobacteria phylum 0 159 1224 1996 1 580370 4 class 0 243 Mariprofundales order 0 243 580371 1 4 5 0 family 238 3 580372 238 0 Mariprofundus genus 1 3 1 377315 1 1921087 0 Mariprofundus ferrinatatus species 120 1 1921086 0 species Mariprofundus aestuarium 117 871 class 0 1807140 6 871 0 Acidithiobacillales order 18 1 6 225057 225058 1 5 16 Acidithiobacillaceae family 0 853 10 119977 4 1 837 genus Acidithiobacillus 0 288 0 Acidithiobacillus caldus species 1 33059 160808 1 254 species Acidithiobacillus ferrivorans 0 920 1 285 species Acidithiobacillus ferrooxidans 0 53975 subphylum 0 68525 185 class Epsilonproteobacteria 0 21485 29547 1 69 19 809 order Nautiliales 0 1 235899 4 1 159 0 family 2 2795691 159 0 Nitratiruptor genus 2 2 1 269258 0 no rank 157 1 2624044 387092 1 157 species Nitratiruptor sp. SB155-2 0 1 224467 0 family 649 191291 1 649 genus 0 1 244787 0 species Nautilia profundicola 649 213849 1 64 42 Campylobacterales order 0 20657 4 2771471 0 family 620 1 3 202746 2 0 Sulfurimonas genus 530 226 0 species Sulfurimonas autotrophica 1 202747 302 0 Sulfurimonas denitrificans species 1 39766 286130 1 90 genus 0 0 species Sulfuricurvum kujiense 90 1 148813 3758 0 Helicobacteraceae family 2 1 14 72293 1 843 88 0 genus 0 species Wolinella succinogenes 88 1 844 3668 Helicobacter genus 0 4 209 1 12 0 Helicobacter felis species 74 1 214 138563 1 species Helicobacter cetorum 0 295 1 217 0 Helicobacter mustelae species 110 32025 1 208 Helicobacter hepaticus species 0 210 1 Helicobacter pylori species 0 2260 1 76936 0 Helicobacter typhlonius species 125 212 1 Helicobacter acinonychis species 0 125 141 species Helicobacter bilis 0 37372 1 1 1591088 0 species Helicobacter himalayensis 103 0 species Helicobacter cinaedi 122 1 213 101 0 no rank 1 2593540 101 0 Helicobacter sp. MIT 01-6242 species 1 222136 2771472 4 643 family 0 7 265570 1 3 326 Sulfurovum genus 0 2646778 1 no rank 0 140 1 387093 140 0 Sulfurovum sp. NBC37-1 species 1 206403 179 0 species Sulfurovum lithotrophicum genus 0 317 269260 1 species Nitratifractor salsuginis 0 317 269261 1 41 1 72294 28 0 Campylobacteraceae family 15594 86 194 26 1 10135 Campylobacter genus 0 Campylobacter peloridis species 0 389 488546 1 1 206 0 species Campylobacter sputorum 669 920 0 Campylobacter jejuni species 1 197 0 species Campylobacter pinnipediorum 631 1 1965231 200 1 Campylobacter curvus species 0 78 1031542 1 Campylobacter volucris species 0 428 827 1 486 Campylobacter ureolyticus species 0 1 76517 0 species Campylobacter hominis 233 824 1 Campylobacter gracilis species 0 55 260714 1 Campylobacter insulaenigrae species 0 471 Campylobacter helveticus species 0 216 28898 1 0 species Campylobacter lari 1075 1 201 1 522485 289 0 Campylobacter avium species 497724 1 451 species Campylobacter subantarcticus 0 1 198 297 0 Campylobacter hyointestinalis species 195 1 species Campylobacter coli 0 720 276 0 species Campylobacter concisus 1 199 75658 1 164 species Campylobacter lanienae 0 374106 1 species Campylobacter cuniculorum 0 290 1213 0 no rank 4 2593542 467 0 species Campylobacter sp. RM16704 1 1500960 Campylobacter sp. RM8964 species 0 290 1660074 1 1 1660076 257 0 species Campylobacter sp. RM12175 0 species Campylobacter sp. RM6137 199 1 1660073 1244531 1 248 species Campylobacter iguaniorum 0 196 1 450 species Campylobacter fetus 0 4096 0 no rank 5 2321108 2321207 1 1054 no rank 0 species Arcobacter sp. L 0 1054 944547 1 0 Arcobacter genus 2151 1 3 28196 19 1 28197 1330 0 species Arcobacter butzleri species Arcobacter nitrofigilis 0 802 28199 1 1 2321187 891 0 genus 1 1850254 891 0 species Arcobacter sp. LPB0137 1 9 57665 18 0 Sulfurospirillum genus 1335 66821 1 species Sulfurospirillum multivorans 0 143 179 Sulfurospirillum barnesii species 0 44674 1 584 no rank 0 2618290 3 1 1581011 0 Sulfurospirillum sp. UCH001 species 222 187 0 Sulfurospirillum sp. JPD-1 species 1 220622 175 0 Sulfurospirillum sp. SL2-1 species 1 1986224 366522 1 90 Sulfurospirillum cavolei species 0 138 0 Sulfurospirillum halorespirans species 1 194424 183 species Sulfurospirillum deleyianum 0 65553 1 35 28221 1 116 32490 Deltaproteobacteria class 0 24 1 69541 50 0 order Desulfuromonadales 4871 14 1 213422 15 0 family Geobacteraceae 3500 3283 Geobacter genus 0 27 28231 1 11 498 Geobacter metallireducens species 0 28232 1 1 35554 0 Geobacter sulfurreducens species 147 2 2627627 626 0 no rank 232 0 Geobacter sp. M21 species 1 443144 0 Geobacter sp. M18 species 394 1 443143 1 1340425 0 Geobacter anodireducens species 171 1 1203471 0 Geobacter daltonii species 241 Geobacter bemidjiensis species 0 253 225194 1 Geobacter lovleyi species 0 161 313985 1 351604 1 954 species Geobacter uraniireducens 0 1 345632 205 0 species Geobacter pickeringii 1 2 392332 4 0 genus Geoalkalibacter 202 Geoalkalibacter subterraneus species 0 198 483547 1 Desulfuromonadaceae family 0 1321 213421 9 1 8 Pelobacter genus 0 549 18 5 1 7 95 0 no rank 1 2620299 0 Pelobacter sp. SFB93 species 95 1 1842532 142 0 Pelobacter carbinolicus species 1 19 1 29543 0 species Pelobacter propionicus 171 1 29542 0 Pelobacter acetylenicus species 134 3 1 890 2 0 genus Desulfuromonas 764 1603606 1 522 species Desulfuromonas soudanensis 0 2614637 1 240 no rank 0 1823759 1 species Desulfuromonas sp. DDH964 0 240 0 order 255 3 453227 4 3 1 453228 255 0 family Desulfarculaceae Desulfarculus genus 0 251 453229 1 2 1 species Desulfarculus baarsii 0 250 453230 1 0 Desulfobacterales order 3320 1 15 213118 20 6 1 213121 6 0 Desulfobulbaceae family 779 genus 0 202 53318 1 65555 1 species Desulfocapsa sulfexigens 0 202 1 893 136 0 genus 1 1986146 136 0 species Desulfobulbus sp. ORNL 256 genus 0 109168 1 1 84980 256 0 Desulfotalea psychrophila species 2 427922 2 1 179 Desulfurivibrio genus 0 177 Desulfurivibrio alkaliphilus species 0 427923 1 3 8 1 213119 2521 0 Desulfobacteraceae family 555 0 Desulfococcus genus 7 1 3 896 897 1 species Desulfococcus multivorans 0 195 1 181663 353 0 species Desulfococcus oleovorans 2 2 1 218207 1063 0 genus Desulfatibacillum 1061 species Desulfatibacillum alkenivorans 0 259354 1 genus 0 718 28222 1 species Desulfobacula toluolica 0 718 28223 1 1 2295 182 0 genus 0 species Desulfobacterium autotrophicum 182 1 2296 order Desulfurellales 0 579 213113 1 5 1 4 117942 4 1 578 Desulfurellaceae family 0 382 0 Desulfurella genus 6 2 1 33001 0 species Desulfurella acetivorans 376 1 33002 1 84404 0 genus 192 Hippea maritima species 0 192 84405 1 31 213115 1 22 3371 order Desulfovibrionales 0 83 0 family 1 213117 45662 1 83 genus 0 83 species Desulfohalobium retbaense 0 45663 1 family Desulfovibrionaceae 0 3041 194924 18 1 15 Lawsonia genus 0 392 41707 2 1 1 391 0 species Lawsonia intracellularis 1 29546 1 2582840 0 genus 164 164 0 Desulfovibrio africanus species 1 873 0 genus Desulfovibrio 1810 9 1 872 18 1 58180 0 species Desulfovibrio alaskensis 129 52 Candidatus Desulfovibrio trichonymphae species 0 1725232 1 0 Desulfovibrio magneticus species 345 1 184917 2593640 1 83 no rank 0 631220 1 species Desulfovibrio sp. G11 0 83 1 44742 109 0 species Desulfovibrio fairfieldensis 901 1 species Desulfovibrio piger 0 120 287 Desulfovibrio desulfuricans species 0 876 1 881 1 Desulfovibrio vulgaris species 0 667 138 0 genus 1 2794998 880 1 species Desulfovibrio salexigens 0 138 2 4 1 2035811 522 0 Pseudodesulfovibrio genus 57320 1 Pseudodesulfovibrio profundus species 0 99 228 0 species Pseudodesulfovibrio indicus 1 1716143 193 0 Pseudodesulfovibrio aespoeensis species 1 182210 2 213116 0 family 216 0 genus 216 2 898 86 species Desulfomicrobium orale 0 132132 1 1 899 0 Desulfomicrobium baculatum species 130 204 29 37 1 19449 Myxococcales order 0 80812 8 suborder 0 6578 0 Polyangiaceae family 5380 1 5 49 18 3 2 1 50 905 0 Chondromyces genus 52 1 species Chondromyces crocatus 0 902 12 2 1 39643 4457 0 genus Sorangium 0 species Sorangium cellulosum 4445 1 56 0 family Sandaracinaceae 1198 1 3 1055686 4 genus Sandaracinus 0 1194 1055688 1 2 6 1188 species Sandaracinus amylolyticus 0 927083 1 1647 suborder 0 224462 3 Kofleriaceae family 0 1647 224464 1 3 16 Haliangium genus 0 1631 162027 1 2 9 1 80816 0 species Haliangium ochraceum 1622 0 suborder 11020 25 80811 3884 Archangiaceae family 0 26 39 1 8 1946 genus Archangium 0 9 47 1 2 1937 species Archangium gephyra 0 48 1 1 2 42 7 0 Cystobacter genus 803 1 43 796 0 species Cystobacter fuscus genus 0 504 40 1 504 0 Stigmatella aurantiaca species 1 41 8 2 1 44 605 0 genus Melittangium species Melittangium boletus 0 597 83453 1 2027 0 family Anaeromyxobacteraceae 5 5 1 1524215 161492 4 1 16 Anaeromyxobacter genus 0 2022 no rank 0 1102 2620896 2 404589 1 species Anaeromyxobacter sp. Fw109-5 0 548 554 species Anaeromyxobacter sp. K 0 447217 1 species Anaeromyxobacter dehalogenans 0 904 161493 1 9 1 31 21 0 family Myxococcaceae 4755 64 32 5 1 3300 genus Myxococcus 0 1 33 0 Myxococcus fulvus species 1352 34 1 557 Myxococcus xanthus species 0 1 83455 626 0 species Myxococcus stipitatus 1297742 1 701 Myxococcus hansupus species 0 1 3 83461 7 0 Corallococcus genus 1434 1 184914 0 species Corallococcus coralloides 796 631 0 Myxococcus macrosporus species 1 35 1 3 1524213 1 0 family Vulgatibacteraceae 354 353 0 genus Vulgatibacter 3 1 2 1524214 1391653 1 350 Vulgatibacter incomptus species 0 610 Syntrophobacterales order 0 1 213462 1 9 2 213465 3 1 168 Syntrophobacteraceae family 0 29526 1 2 6 genus Syntrophobacter 0 166 160 0 Syntrophobacter fumaroxidans species 1 119484 441 0 Syntrophaceae family 5 1 5 213468 1 43773 0 genus 131 131 Syntrophus aciditrophicus species 0 316277 1 1 60892 137 0 genus species Desulfobacca acetoxidans 0 137 60893 1 0 genus Desulfomonile 168 2 1 2357 1 167 Desulfomonile tiedjei species 0 2358 1 0 Alphaproteobacteria class 223561 1 563 28211 215 order Caulobacterales 0 5119 204458 1 20 22 72 76892 1 19 5097 family Caulobacteraceae 0 2 1 20 4 0 genus Phenylobacterium 469 284016 1 species Phenylobacterium zucineum 0 465 2 76890 2 1 225 genus Asticcacaulis 0 78587 1 223 species Asticcacaulis excentricus 0 81440 1 no rank 0 227 227 Caulobacteraceae bacterium OTSz_A_272 species 0 1759059 1 41275 1 7 34 Brevundimonas genus 0 1774 221 0 Brevundimonas vesicularis species 1 41276 974 no rank 0 2622653 3 species Brevundimonas sp. LM2 0 470 1938605 1 216 0 species Brevundimonas sp. GW460-12-10-14-LB2 1 1827469 1532555 1 Brevundimonas sp. DS20 species 0 288 588932 1 Brevundimonas naejangsanensis species 0 208 1 74313 337 0 species Brevundimonas subvibrioides 6 1 75 27 0 Caulobacter genus 2330 Caulobacter henricii species 0 313 69395 1 436 0 Caulobacter mirabilis species 1 69666 475 0 no rank 1 2648921 475 0 Caulobacter sp. K31 species 1 366602 88688 1 390 Caulobacter segnis species 0 0 Caulobacter vibrioides species 689 1 155892 66253 order Rhizobiales 0 382 356 1 212 38 45401 1 19 3996 family Hyphomicrobiaceae 0 0 Rhodoplanes genus 538 1 2 29407 12 1 2619116 0 no rank 526 526 Rhodoplanes sp. Z2-YC6860 species 0 674703 1 genus Hyphomicrobium 0 1141 81 4 1 31 1 53399 362 0 species Hyphomicrobium denitrificans 261 0 species Hyphomicrobium nitrativorans 1 1427356 1 2619925 0 no rank 487 1 717785 487 0 species Hyphomicrobium sp. MC1 119044 1 2 4 Filomicrobium genus 0 185 181 Candidatus Filomicrobium marinum species 0 1608628 1 genus Rhodomicrobium 0 284 1068 2 1 9 275 Rhodomicrobium vannielii species 0 1069 1 1 2 1082930 7 0 Pelagibacterium genus 262 255 0 species Pelagibacterium halotolerans 1 531813 genus Devosia 0 1115 46913 1 4 27 0 no rank 1088 3 196773 species Devosia sp. I507 0 236 2083786 1 1 1643450 380 0 species Devosia sp. H5989 species Devosia sp. A16 0 472 1736675 1 59282 1 2 10 Blastochloris genus 0 433 1079 1 species Blastochloris viridis 0 423 0 family Methylocystaceae 1041 6 1 31993 5 9 425 2 1 432 Methylosinus genus 0 0 species Methylosinus trichosporium 423 1 426 133 1 3 24 genus Methylocystis 0 604 2625913 1 no rank 0 304 187303 1 Methylocystis sp. SC2 species 0 304 Methylocystis bryophila species 0 276 655015 1 1 15 119045 25 0 Methylobacteriaceae family 7530 127 407 1 9 4095 genus Methylobacterium 0 1 334852 0 Methylobacterium oryzae species 380 418223 1 species Methylobacterium phyllosphaerae 0 395 534 0 species Methylobacterium radiotolerans 1 31998 0 Methylobacterium aquaticum species 626 1 270351 2615210 3 1476 no rank 0 1 426117 634 0 species Methylobacterium sp. 4-46 483 0 Methylobacterium sp. C1 species 1 1479019 1 925818 0 Methylobacterium sp. AMS5 species 359 557 species Methylobacterium nodulans 0 114616 1 11 2 1 186650 427 0 genus Microvirga 1882682 1 species Microvirga ossetica 0 416 0 genus 2983 3 2282523 29429 1 352 Methylobacterium zatmanii species 0 223967 1 Methylobacterium populi species 0 761 1870 Methylobacterium extorquens species 0 408 1 2708 family Brucellaceae 0 10 118882 20 1 genus Brucella 0 1229 234 1 14 317 48 0 Brucella abortus species 1 235 0 Brucella ceti species 59 1 120577 29461 1 178 species Brucella suis 0 1 29459 78 0 species Brucella melitensis 273 0 no rank 4 2632610 11 0 species Brucella sp. 2002734562 1 1891098 83 Brucella sp. 141012304 species 0 1885919 1 1 1844051 82 0 Brucella sp. 09RB8910 species 97 species Brucella sp. 09RB8471 0 1149952 1 species Brucella vulpis 0 79 981386 1 1 236 21 0 Brucella ovis species 0 species Brucella canis 71 1 36855 Brucella pinnipedialis species 0 67 120576 1 38 species Brucella microti 0 444163 1 528 1 5 29 genus Ochrobactrum 0 1469 1 419475 0 Ochrobactrum pseudogrignonense species 368 282 0 species Ochrobactrum sp. A44 1 271865 species Ochrobactrum anthropi 0 287 529 1 1 571256 0 Ochrobactrum pituitosum species 503 1 55 82115 118 0 Rhizobiaceae family 18464 0 no rank 11527 36 227290 7 1 357 60 0 genus Agrobacterium 2997 2 2632611 0 no rank 646 Agrobacterium sp. H13-3 species 0 229 861208 1 1842536 1 417 species Agrobacterium sp. RAC06 0 2 1183400 1767 0 species group 358 1 Agrobacterium tumefaciens species 0 1523 1 1176649 0 species Agrobacterium fabrum 244 263 Agrobacterium rhizogenes species 0 359 1 261 0 species Agrobacterium vitis 1 373 503 1 27 379 8022 0 genus Rhizobium 1 398 0 species Rhizobium tropici 279 3248 0 no rank 21 2613769 1703969 1 283 species Rhizobium sp. N324 0 1 1703965 1 0 Rhizobium sp. N6212 species 1 1703964 1 0 Rhizobium sp. N621 species 1914541 1 192 species Rhizobium sp. Y9 0 species Rhizobium sp. N741 0 2 1703967 1 0 Rhizobium sp. 10195 species 303 1 2028343 235 Rhizobium sp. Kim5 species 0 2020311 1 0 Rhizobium sp. NXC14 species 200 1 1981173 1 2020313 82 0 Rhizobium sp. TAL182 species 0 Rhizobium sp. N871 species 3 1 1703968 336 0 Rhizobium sp. ACO-34A species 1 1571470 1 424182 0 Rhizobium sp. IRBG74 species 226 1703966 1 species Rhizobium sp. N731 0 54 1 1869170 194 0 species Rhizobium sp. S41 1703961 1 species Rhizobium sp. N1314 0 54 5 Rhizobium sp. N113 species 0 1703960 1 0 species Rhizobium sp. NT-26 232 1 1125847 2048897 1 Rhizobium sp. NXC24 species 0 338 234 species Rhizobium sp. IE4771 0 1301032 1 1 1703962 7 0 species Rhizobium sp. N1341 1 2020312 266 0 Rhizobium sp. CIAT894 species 0 species Rhizobium etli 895 1 29449 1 396 728 0 species Rhizobium phaseoli 1 384 0 Rhizobium leguminosarum species 1955 1 56730 414 0 Rhizobium gallicum species genus Neorhizobium 0 508 1525371 1 2 3 1 399 0 species Neorhizobium galegae 505 10 227292 0 no rank 4332 3680 genus Sinorhizobium 0 63 28105 7 1 0 species Sinorhizobium americanum 379 1 194963 663276 1 species group 0 1254 1 380 0 Sinorhizobium fredii species 1254 315 Sinorhizobium medicae species 0 110321 1 0 no rank 776 2 2613772 1 1842534 410 0 Sinorhizobium sp. RAC02 species 1 794846 366 0 species Sinorhizobium sp. CCBAU 05631 0 species Sinorhizobium meliloti 893 1 382 Ensifer genus 0 652 106591 3 1 9 1 106592 381 0 Ensifer adhaerens species 0 Ensifer sojae species 262 1 716925 529 0 Shinella genus 4 1 2 323620 2643062 1 525 no rank 0 1 879274 0 Shinella sp. HZN7 species 525 1958 genus Liberibacter 0 23 34019 6 1 507 0 species Liberibacter crescens 1 1273132 species Candidatus Liberibacter solanacearum 0 376 556287 1 0 Candidatus Liberibacter americanus species 415 1 309868 1 34020 0 species Candidatus Liberibacter africanus 342 34021 1 species Candidatus Liberibacter asiaticus 0 295 0 family Aurantimonadaceae 1532 1 7 255475 4 414371 1 2 7 Aureimonas genus 0 395 388 0 no rank 1 2615206 Aureimonas sp. AU20 species 0 388 1349819 1 0 genus Martelella 1133 4 1 293088 30 1 2629616 0 no rank 410 686597 1 species Martelella sp. AD-3 0 410 282 0 species Martelella endophytica 1 1486262 1 293089 411 0 species Martelella mediterranea 844 0 family Beijerinckiaceae 6 1 5 45404 12 532 1 2 518 Beijerinckia genus 0 1 533 0 species Beijerinckia indica 506 0 Methylocella genus 320 1 2 120652 9 1 199596 0 species Methylocella silvestris 311 69277 1 20 30 family Phyllobacteriaceae 0 6120 1 2 28100 4 0 genus Phyllobacterium 315 1867719 1 species Phyllobacterium zundukense 0 311 426 0 Aminobacter genus 7 1 2 31988 419 0 species Aminobacter aminovorans 1 83263 244 Chelativorans genus 0 9 449972 2 1 235 no rank 0 2643807 1 1 266779 0 Chelativorans sp. BNC1 species 235 95 9 1 68287 4261 0 genus Mesorhizobium 39645 1 Mesorhizobium ciceri species 0 714 1 325217 0 no rank 566 566 0 Mesorhizobium sp. WSM1497 species 1 278153 1 2066070 0 species Mesorhizobium japonicum 452 species Mesorhizobium amorphae 0 453 71433 1 381 1 species Mesorhizobium loti 0 536 species Mesorhizobium australicum 0 467 536018 1 453 Mesorhizobium sp. B7 species 0 1670800 1 525 0 species Mesorhizobium opportunistum 1 593909 genus Hoeflea 0 468 274591 2 1 12 0 no rank 456 1 2614931 456 0 Hoeflea sp. IMCC20628 species 1 1620421 1 2 245876 10 0 Nitratireductor genus 376 0 Nitratireductor basaltis species 366 1 472175 18 1 772 15 0 Bartonellaceae family 7409 773 1 17 172 Bartonella genus 0 7394 0 species Bartonella quintana 375 1 803 1 38323 403 0 species Bartonella henselae 460 Bartonella tribocorum species 0 85701 1 1 774 0 Bartonella bacilliformis species 469 6 2645622 0 no rank 2945 0 Bartonella sp. JB15 species 460 1 1933906 460 0 Bartonella sp. JB63 species 1 1933907 506 0 species Bartonella sp. Raccoon60 1 1933912 species Bartonella sp. WD16.2 0 481 1933904 1 487 0 species Bartonella sp. A1379B 1 1933910 551 0 species Bartonella sp. 1-1C 1 515256 388640 1 247 Bartonella australis species 0 1686310 1 480 Bartonella apis species 0 1 56426 0 Bartonella clarridgeiae species 461 1 33047 0 Bartonella vinsonii species 463 33045 1 species Bartonella grahamii 0 437 482 0 Bartonella ancashensis species 1 1318743 0 family Rhodobiaceae 472 3 1 119043 8 256616 1 2 15 Parvibaculum genus 0 464 256618 1 species Parvibaculum lavamentivorans 0 449 6 119042 1118 0 no rank 17 1 2 1734920 326 0 genus Pseudorhodoplanes 1235591 1 309 species Pseudorhodoplanes sinuspersici 0 Methyloceanibacter genus 0 287 1484898 2 1 18 269 0 species Methyloceanibacter caenitepidi 1 1384459 505 genus Hartmannibacter 0 9 1572860 1 2 496 0 species Hartmannibacter diazotrophicus 1 1482074 Xanthobacteraceae family 0 1571 335928 7 1 18 497 Starkeya genus 0 12 152053 1 2 921 1 485 Starkeya novella species 0 2 1 279 4 0 genus Xanthobacter 663 659 0 species Xanthobacter autotrophicus 1 280 2 1 6 4 0 Azorhizobium genus 393 7 1 Azorhizobium caulinodans species 0 389 0 family Chelatococcaceae 993 1 4 2036754 1 genus Chelatococcus 0 992 28209 1 3 21 1 2638111 573 0 no rank 1702325 1 Chelatococcus sp. CO-6 species 0 573 Chelatococcus daeguensis species 0 398 444444 1 0 Bradyrhizobiaceae family 12073 1 26 41294 70 58 5 1 85413 1802 0 genus Bosea 3 2653178 1253 0 no rank 0 species Bosea sp. PAMC 26642 386 1 1792307 1 1842539 501 0 Bosea sp. RAC05 species 0 Bosea sp. AS-1 species 366 1 2015316 491 Bosea vaviloviae species 0 1526658 1 525 genus Nitrobacter 0 7 911 3 1 1 912 0 species Nitrobacter hamburgensis 303 1 913 215 0 species Nitrobacter winogradskyi 333 Variibacter genus 0 9 1649510 1 2 1 1333996 0 Variibacter gotjawalensis species 324 2985 Rhodopseudomonas genus 0 35 1073 2 1 1 1076 2950 0 species Rhodopseudomonas palustris 0 Bradyrhizobium genus 6083 11 1 374 159 6 2631580 3132 0 no rank species Bradyrhizobium sp. BTAi1 0 507 288000 1 447 0 Bradyrhizobium sp. CCGE-LA001 species 1 1223566 543 0 Bradyrhizobium sp. species 1 376 1 115808 438 0 Bradyrhizobium sp. ORS 285 species 0 Bradyrhizobium sp. ORS 278 species 614 1 114615 0 Bradyrhizobium sp. SK17 species 583 1 2057741 1274631 1 481 Bradyrhizobium icense species 0 920 species Bradyrhizobium diazoefficiens 0 1355477 1 579 0 Bradyrhizobium oligotrophicum species 1 44255 1 375 812 0 species Bradyrhizobium japonicum 40136 2 1 2 Oligotropha genus 0 275 0 species Oligotropha carboxidovorans 273 1 40137 0 Rickettsiales order 11854 1 56 766 15 8 28 1 775 4918 0 family Rickettsiaceae 33988 25 tribe 0 4569 0 Orientia genus 718 1 2 69474 3 1 784 715 0 Orientia tsutsugamushi species 780 23 1 364 genus Rickettsia 0 3851 114292 2 789 species group 0 1 785 399 0 species Rickettsia typhi 1 782 390 0 Rickettsia prowazekii species 1 114295 415 0 no rank 1 337479 415 0 Rickettsia endosymbiont of Bemisia tabaci species 0 species group 1517 17 114277 species Rickettsia heilongjiangensis 0 24 226665 1 0 Rickettsia rickettsii species 37 1 783 0 Rickettsia conorii species 33 1 781 35 Rickettsia japonica species 0 35790 1 75 0 species Rickettsia rhipicephali 1 33992 25 0 species Rickettsia slovaca 1 35794 1 35792 55 0 species Rickettsia parkeri 278 0 species Rickettsia australis 1 787 46 species Rickettsia massiliae 0 35791 1 46 0 species Rickettsia africae 1 35788 42862 1 Rickettsia felis species 0 270 Rickettsia peacockii species 0 122 47589 1 22 0 Rickettsia philipii species 1 1105106 1 786 152 0 Rickettsia akari species 173 0 species Rickettsia monacensis 1 109232 0 species Rickettsia amblyommatis 86 1 33989 38 Rickettsia montanensis species 0 33991 1 766 0 species group 2 1129742 0 Rickettsia canadensis species 288 1 788 478 0 species Rickettsia bellii 1 33990 2115980 2 1 1 genus Candidatus Phycorickettsia 0 341 2115978 1 340 Candidatus Phycorickettsia trachydisci species 0 1 3 1 1328881 348 0 family Candidatus Midichloriaceae 347 0 genus Candidatus Midichloria 11 2 1 411566 species Candidatus Midichloria mitochondrii 0 336 234827 1 793 no rank 0 1699067 1 1 1528098 0 Rickettsiales bacterium Ac37b species 793 0 Anaplasmataceae family 5780 1 23 942 12 768 4 1 1 genus Anaplasma 0 329 0 species group 140 1 106179 948 1 Anaplasma phagocytophilum species 0 140 83 Anaplasma centrale species 0 769 1 0 Anaplasma marginale species 105 1 770 470 genus Neorickettsia 0 12 33993 4 1 33994 1 134 Neorickettsia helminthoeca species 0 950 1 species Neorickettsia risticii 0 178 1 951 0 Neorickettsia sennetsu species 146 952 8 2437 tribe 0 2437 0 Wolbachia genus 48 1 8 953 7 2640676 2389 0 no rank 246273 1 species Wolbachia endosymbiont of Cimex lectularius 0 300 1 80849 0 Wolbachia endosymbiont of Brugia malayi species 310 1 100901 0 Wolbachia endosymbiont of Onchocerca ochengi species 278 0 species Wolbachia endosymbiont of Onchocerca volvulus 275 1 77551 66084 1 321 Wolbachia sp. wRi species 0 1 77038 0 species Wolbachia endosymbiont of Drosophila simulans 597 308 0 species Wolbachia endosymbiont of Drosophila melanogaster 1 163164 2532 genus Ehrlichia 0 18 943 1 6 4 106178 0 species group 2110 Ehrlichia muris species 0 484 35795 1 1 944 528 0 species Ehrlichia canis 0 species Ehrlichia chaffeensis 494 1 945 604 species Ehrlichia ruminantium 0 779 1 0 no rank 404 1 106181 0 Ehrlichia sp. HF species 404 1 391036 0 order Parvularculales 510 4 1 255473 2 508 0 family Parvularculaceae 4 1 3 255474 1 2 208215 8 0 Parvularcula genus 504 496 species Parvularcula bermudensis 0 208216 1 1059 Holosporales order 0 2 1921002 7 1 380 family 0 44746 1 0 no rank 380 1 204454 380 endosymbiont of Acanthamoeba sp. UWC8 species 0 86106 1 392 0 family 2 2100208 genus Candidatus Nucleicultrix 0 392 1509243 1 2 1 Candidatus Nucleicultrix amoebiphila species 0 391 1509244 1 4 3 1 1777752 285 0 family Candidatus Paracaedibacteraceae 281 0 Candidatus Paracaedibacter genus 4 2 1 1521255 1 91604 277 0 Candidatus Paracaedibacter acanthamoebae species 2 2800059 368 0 order 368 0 family 2 2800061 2 1 74317 11 0 Maricaulis genus 368 1 74318 0 Maricaulis maris species 357 2800060 6 1276 order 0 69657 1 6 15 Hyphomonadaceae family 0 1276 738 genus Hyphomonas 0 17 85 3 1 240 Hyphomonas neptunium species 0 81032 1 1 2630699 481 0 no rank Hyphomonas sp. Mor2 species 0 481 1906738 1 Hirschia genus 0 523 2723 2 1 6 2724 1 517 species Hirschia baltica 0 204457 1 81 96 Sphingomonadales order 0 21186 141 41297 1 58 17017 family Sphingomonadaceae 0 13687 1 15 106 Sphingomonas genus 0 6393 294 0 Sphingomonas taxi species 1 1549858 308 0 Sphingomonas panacis species 1 1560345 species Sphingomonas melonis 0 330 152682 1 539 0 species Sphingomonas sanxanigenens 1 397260 160791 2 1 530 species Sphingomonas wittichii 0 1085 555 0 Sphingomonas sp. DC-6 strain 1 1283312 3048 no rank 0 196159 6 1327635 1 258 species Sphingomonas sp. Cra20 0 0 Sphingomonas sp. MM-1 species 356 1 745310 1390395 1 species Sphingomonas sp. LK11 0 1583 1 1030157 270 0 Sphingomonas sp. KC8 species 1938607 1 310 species Sphingomonas sp. LM7 0 271 species Sphingomonas sp. NIC1 0 1961362 1 1 1609977 330 0 Sphingomonas hengshuiensis species 1 93064 353 0 species Sphingomonas koreensis 220 Citromicrobium genus 0 2 72173 2 1 2630544 1 218 no rank 0 218 0 Citromicrobium sp. JL477 species 1 1634516 1 2685927 261 0 genus species Sphingomonas sp. JJ-A5 0 261 1921510 1 292 0 genus Blastomonas 4 1 2 150203 2626550 1 288 no rank 0 0 species Blastomonas sp. RAC04 288 1 1842535 546 genus Sphingorhabdus 0 10 1434046 3 1 536 no rank 0 2614947 2 1 2077182 0 Sphingorhabdus sp. YGSMI21 species 260 276 0 species Sphingorhabdus sp. M41 1 1806885 0 genus 229 1 2709685 229 Sphingorhabdus flavimaris species 0 266812 1 165695 15 1 99 Sphingobium genus 0 3801 216 0 species Sphingobium herbicidovorans 1 76947 2611147 6 1447 no rank 0 213 species Sphingobium sp. MI1205 0 407020 1 1 1855519 194 0 species Sphingobium sp. EP60837 291 species Sphingobium sp. SYK-6 0 627192 1 1 1843368 0 Sphingobium sp. RAC03 species 214 251 0 species Sphingobium sp. TKS 1 1315974 0 species Sphingobium sp. YBL2 284 1 484429 1332080 1 214 Sphingobium baderi species 0 332055 1 274 Sphingobium indicum species 0 120107 1 species Sphingobium cloacae 0 235 0 species Sphingobium yanoikuyae 524 1 13690 0 species Sphingobium chlorophenolicum 266 1 46429 Sphingobium japonicum species 0 293 332056 1 233 0 species Sphingobium hydrophobicum 1 1673076 Novosphingobium genus 0 1346 165696 1 5 26 300 no rank 0 2644732 1 300 0 species Novosphingobium sp. PP1Y 1 702113 205844 1 360 species Novosphingobium pentaromativorans 0 0 species Novosphingobium aromaticivorans 254 1 48935 1 158500 406 0 Novosphingobium resinovorum species 375 0 genus 1 1649486 375 0 species Rhizorhabdus dicambivorans 1 1850238 0 Zymomonas genus 462 2 1 541 2 460 species Zymomonas mobilis 0 542 1 165697 10 1 45 genus Sphingopyxis 0 2951 33052 1 268 species Sphingopyxis terrae 0 0 Sphingopyxis fribergensis species 290 1 1515612 1 33050 0 Sphingopyxis macrogoltabida species 615 267128 1 315 species Sphingopyxis granuli 0 1140 no rank 0 2614943 4 1 292913 0 Sphingopyxis sp. 113P3 species 223 1 1866325 320 0 Sphingopyxis sp. MG species species Sphingopyxis sp. LPB0140 0 275 1913578 1 1 1357916 322 0 Sphingopyxis sp. QXT-31 species 0 species Sphingopyxis alaskensis 278 1 117207 4073 0 Erythrobacteraceae family 56 1 22 335929 360 0 genus 2 1855416 1 266951 0 Erythrobacter seohaensis species 151 1 192812 0 species Erythrobacter flavus 209 0 genus 172 1 2800685 172 0 species Altererythrobacter marensis 1 543877 51 1 4 361177 540 0 Altererythrobacter genus 167 species Altererythrobacter ishigakiensis 0 476157 1 1267766 1 species Altererythrobacter atlanticus 0 162 species Altererythrobacter epoxidivorans 0 160 361183 1 619 genus 0 2800681 2 1 502682 0 Erythrobacter gangjinensis species 309 1 1648404 310 0 species Erythrobacter atlanticus 481 0 Croceicoccus genus 12 1 3 1295327 0 species Croceicoccus marinus 280 1 450378 Croceicoccus naphthovorans species 0 189 1348774 1 2800682 1 233 genus 0 645517 1 species Altererythrobacter namhicola 0 233 0 genus 370 2 2800686 193 species Altererythrobacter dongtanensis 0 692370 1 1 1982042 177 0 species Altererythrobacter mangrovi 2800788 6 no rank 0 1242 Porphyrobacter genus 0 553 1111 3 1 37 2 2683265 0 no rank 516 0 Porphyrobacter HT-58-2 species 255 1 2023229 Porphyrobacter sp. LM 6 species 0 261 1896196 1 0 genus Erythrobacter 689 3 1 1041 51 1112 1 species Porphyrobacter neustonensis 0 206 39960 1 Erythrobacter litoralis species 0 432 0 order Magnetococcales 230 4 1 1191478 3 227 family Magnetococcaceae 0 3 1191479 1 3 3 2 1 162171 224 0 Magnetococcus genus 1124597 1 species Magnetococcus marinus 0 221 9 54526 1 9 63320 Pelagibacterales order 0 29 1655514 6 1 58479 family Pelagibacteraceae 0 2 1655516 0 no rank 30599 1 744985 3879 0 species alpha proteobacterium HIMB59 859653 1 species alpha proteobacterium HIMB5 0 26720 0 genus Candidatus Pelagibacter 27851 1 3 198251 10 2647897 1 no rank 0 4651 4651 0 species Candidatus Pelagibacter sp. IMCC9063 1 1002672 198252 1 Candidatus Pelagibacter ubique species 0 23190 0 Candidatus Fonsibacter genus 4832 2 1 2045213 10 1 1925548 0 species Candidatus Fonsibacter ubiquis 4822 3287 no rank 0 82117 8 genus Micavibrio 0 327 213485 2 1 1 species Micavibrio aeruginosavorus 0 326 349221 1 0 Polymorphum genus 491 1 2 991903 12 0 species Polymorphum gilvum 479 1 991904 502 0 genus Phreatobacter 13 2 1 1632780 0 Phreatobacter sp. S-12 species 489 1 1868589 62654 2 clade 0 1967 767891 2 1 15 Candidatus Puniceispirillum genus 0 1967 0 Candidatus Puniceispirillum marinum species 1952 1 767892 28567 order Rhodobacterales 0 117 204455 1 89 358 31989 88 1 28450 Rhodobacteraceae family 0 genus 0 221 1759396 1 221 no rank 0 2622455 1 0 Marivivens sp. JLT3646 species 221 1 1920883 1 5 302485 35 0 Phaeobacter genus 3183 0 Phaeobacter porticola species 287 1 1844006 860 0 Phaeobacter gallaeciensis species 1 60890 685 0 Phaeobacter piscinae species 1 1580596 1316 Phaeobacter inhibens species 0 221822 1 genus 0 467 2211641 1 1 245188 0 species Loktanella vestfoldensis 467 554 0 no rank 2 58840 1 2033435 298 0 Rhodobacteraceae bacterium QY30 species 1904441 1 256 Rhodobacteraceae bacterium species 0 263377 2 genus 0 979 1 1229727 473 0 Thiobacimonas profunda species 1 2640570 0 no rank 506 1792508 1 species Yangia sp. CCB-MM3 0 506 0 genus Rhodovulum 1558 1 4 34008 10 0 no rank 859 2 2631432 Rhodovulum sp. MB263 species 0 438 308754 1 1 1564506 421 0 Rhodovulum sp. P5 species 689 0 species Rhodovulum sulfidophilum 1 35806 504 genus Defluviimonas 0 2 1097466 2 1 0 species Defluviimonas alba 502 1 1335048 genus Ketogulonicigenium 0 525 92944 1 3 7 0 Ketogulonicigenium vulgare species 263 1 92945 92947 1 255 Ketogulonicigenium robustum species 0 0 genus 487 1 58842 487 0 no rank 1 2624628 0 Sagittula sp. P11 species 487 1 2009329 329 0 genus 1 1579315 1 1579316 329 0 Halocynthiibacter arcticus species 3350 genus Paracoccus 0 47 265 9 1 0 Paracoccus aminophilus species 330 1 34003 367 species Paracoccus aminovorans 0 34004 1 1 246570 396 0 no rank 396 0 species Paracoccus sp. BM15 1 1529068 468 Paracoccus denitrificans species 0 266 1 1 1077935 0 Paracoccus zhejiangensis species 427 405 0 species Paracoccus sp. CBA4604 1 2065379 species Paracoccus yeei 0 523 147645 1 387 0 Paracoccus contaminans species 1 1945662 478070 4 1 35 Labrenzia genus 0 1293 442 Labrenzia aggregata species 0 187304 1 2648686 2 no rank 0 816 402 species Labrenzia sp. CP4 0 1674922 1 414 0 Labrenzia sp. VG12 species 1 2021862 4 191028 2 1 535 Leisingera genus 0 0 species Leisingera methylohalidivorans 531 1 133924 989 0 genus Ruegeria 24 1 3 97050 0 Ruegeria pomeroyi species 639 1 89184 no rank 0 326 2625375 1 326 0 species Ruegeria sp. TM1040 1 292414 1 159345 2 1 378 genus Roseibacterium 0 1 159346 377 0 Roseibacterium elongatum species 7 5 1 875170 1739 0 Celeribacter genus 1758178 1 species Celeribacter ethanolicus 0 326 549 species Celeribacter indicus 0 1208324 1 1397108 1 269 Celeribacter marinus species 0 1411902 1 species Celeribacter manganoxidans 0 588 Roseobacter genus 0 864 2433 3 1 12 0 species Roseobacter litoralis 415 1 42443 437 species Roseobacter denitrificans 0 2434 1 1 1649279 361 0 genus Ruegeria mobilis species 0 361 379347 1 3 119541 2 1 395 Rhodobaca genus 0 441209 1 Rhodobaca barguzinensis species 0 392 1 2 285107 2 0 genus Thioclava 301 299 0 species Thioclava nitratireducens 1 1915078 1 299261 369 0 genus 1 299262 0 Tateyamaria omphalii species 369 2 0 Loktanella genus 1 245186 4 2 1 74032 394 0 Antarctobacter genus 390 0 Antarctobacter heliothermus species 1 74033 0 genus Confluentimicrobium 590 1 2 1609958 4 0 no rank 586 1 2643318 586 0 species Confluentimicrobium sp. EMB200-NS6 1 1609966 5 1 2 360528 531 0 Pelagibaca genus 1 1250539 526 0 Pelagibaca abyssi species Rhodobacter genus 0 2304 1060 5 1 23 Rhodobacter capsulatus species 0 324 1061 1 no rank 0 873 196779 2 0 species Rhodobacter sp. CZR27 433 1 2033869 1 1850250 440 0 Rhodobacter sp. LPB0142 species 1063 1 Rhodobacter sphaeroides species 0 1084 2 309512 1 2 456 genus Dinoroseobacter 0 454 Dinoroseobacter shibae species 0 215813 1 339 0 genus Jannaschia 2 2 1 188905 0 no rank 337 1 2645469 290400 1 337 Jannaschia sp. CCS1 species 0 2 1284657 2 1 515 genus Planktomarina 0 0 species Planktomarina temperata 513 1 1284658 859 0 Sulfitobacter genus 1 1 3 60136 1402135 1 411 species Sulfitobacter pseudonitzschiae 0 0 no rank 447 1 196795 1 1917485 0 species Sulfitobacter sp. AM1-D1 447 74030 1 361 genus 0 215743 1 361 species Roseovarius mucosus 0 53945 1 4 12 Octadecabacter genus 0 1362 1458307 1 252 Octadecabacter temperatus species 0 53946 1 479 species Octadecabacter arcticus 0 0 species Octadecabacter antarcticus 619 1 1217908 3 0 Thalassococcus genus 1 436357 Marinovum genus 0 580 367771 2 1 2 1 42444 578 0 species Marinovum algicola 227873 1 2 7 genus Pannonibacter 0 415 121719 1 408 species Pannonibacter phragmitetus 0 64 1 204441 180 0 order Rhodospirillales 20317 0 family Rhodospirillaceae 12900 1 30 41295 155 1 2 1182780 4 0 genus Magnetospira 359 1 2685734 0 no rank 355 1288970 1 355 species Magnetospira sp. QH-2 0 2 1 1804663 1 0 genus Haematospirillum 227 1549855 1 Haematospirillum jordaniae species 0 226 1118 0 genus Rhodospirillum 8 1 3 1081 0 Rhodospirillum centenum species 600 1 34018 0 Rhodospirillum rubrum species 510 1 1085 6 1543704 2 1 470 genus Niveispirillum 0 0 Niveispirillum cyanobacteriorum species 464 1 1612173 Pararhodospirillum genus 0 348 1612157 2 1 2 1084 1 346 species Pararhodospirillum photometricum 0 genus Magnetospirillum 0 2532 13134 5 1 48 55518 1 674 Magnetospirillum gryphiswaldense species 0 species Magnetospirillum magneticum 0 607 84159 1 2 2617991 1203 0 no rank species Magnetospirillum sp. ME-1 0 631 1639348 1 Magnetospirillum sp. XM-1 species 0 572 1663591 1 617 0 genus Nitrospirillum 2 2 1 1543705 Nitrospirillum amazonense species 0 615 28077 1 765 genus Tistrella 0 11 171436 1 2 1 171437 0 species Tistrella mobilis 754 191 5 1 55 genus Azospirillum 0 4077 species Azospirillum thiophilum 0 888 528244 1 1234 0 species Azospirillum brasilense 1 192 1226968 1 458 species Azospirillum humicireducens 0 1 193 1442 0 Azospirillum lipoferum species 0 Thalassospira genus 1053 1 3 168934 9 1 2048283 467 0 species Thalassospira sp. CSC3H3 220697 1 species Thalassospira xiamenensis 0 577 1263978 1 1179 genus 0 species Candidatus Endolissoclinum faulkneri 0 1179 1263979 1 7237 0 Acetobacteraceae family 72 1 33 433 3 153497 2 1 183 Kozakia genus 0 species Kozakia baliensis 0 180 153496 1 1 89583 346 0 genus 33996 1 Gluconacetobacter diazotrophicus species 0 346 1 2 320496 1 0 genus Neoasaia 202 Neoasaia chiangmaiensis species 0 201 320497 1 0 Parasaccharibacter genus 168 2 1 1602345 1 0 Parasaccharibacter apium species 167 1 1510841 0 genus Gluconobacter 453 3 1 441 1 318683 1 species Gluconobacter albidus 0 162 Gluconobacter oxydans species 0 290 442 1 0 Granulibacter genus 559 2 1 364409 9 1 364410 0 species Granulibacter bethesdensis 550 708 0 Acidiphilium genus 19 1 3 522 524 1 340 Acidiphilium cryptum species 0 349 0 species Acidiphilium multivorum 1 62140 2172 0 genus Acetobacter 23 1 8 434 65959 1 species Acetobacter pomorum 0 141 221 species Acetobacter senegalensis 0 446692 1 Acetobacter oryzifermentans species 0 150 1633874 1 1 151157 168 0 subgenus 1 435 168 0 species Acetobacter aceti 1076596 1 256 Acetobacter persici species 0 813 0 species Acetobacter pasteurianus 1 438 104102 1 Acetobacter tropicalis species 0 400 genus Komagataeibacter 0 1224 1434011 5 1 29 357 Komagataeibacter nataicola species 0 265960 1 1177712 1 272 species Komagataeibacter medellinensis 0 1 28448 0 Komagataeibacter xylinus species 391 species Komagataeibacter europaeus 0 175 33995 1 genus 0 151 91914 1 151 Asaia bogorensis species 0 91915 1 Roseomonas genus 0 999 125216 3 1 16 498 0 no rank 1 2617492 0 species Roseomonas sp. FDAARGOS_362 498 1 2018065 1 257708 485 0 Roseomonas gilardii species 3 1553900 12 1 1454 class Oligoflexia 0 5 1 213481 1 0 order Bdellovibrionales 740 739 Bdellovibrionaceae family 0 8 213483 1 4 4 958 1 3 731 Bdellovibrio genus 0 species Bdellovibrio exovorus 0 180 453816 1 1 959 547 0 Bdellovibrio bacteriovorus species 2024979 1 6 4 Bacteriovoracales order 0 711 family 0 234 263369 2 genus Bacteriovorax 0 234 146784 2 1 1 Bacteriovorax stolpii species 0 233 960 1 1 1 3 1652132 473 0 family Halobacteriovoraceae 1 1652133 2 1 472 genus Halobacteriovorax 0 97084 1 species Halobacteriovorax marinus 0 471 0 Gammaproteobacteria class 291096 879 1 1236 685 6079 order Pasteurellales 0 8 135625 29 1 34 1 28 712 6071 0 family Pasteurellaceae 2252 genus Haemophilus 0 9 724 6 1 119 species Haemophilus pittmaniae 0 249188 1 727 1 species Haemophilus influenzae 0 1254 species Haemophilus parainfluenzae 0 165 729 1 2609962 1 no rank 0 172 712310 1 172 Haemophilus sp. oral taxon 036 species 0 730 1 species [Haemophilus] ducreyi 0 533 598 0 Mannheimia genus 1 1 4 75984 2645054 1 no rank 0 164 0 species Mannheimia sp. USDA-ARS-USMARC-1261 164 1 1432056 1 75985 0 Mannheimia haemolytica species 206 227 Mannheimia varigena species 0 85404 1 558 0 genus Actinobacillus 3 1 5 713 189 0 species Actinobacillus pleuropneumoniae 1 715 716 1 Actinobacillus suis species 0 151 67854 1 Actinobacillus succinogenes species 0 83 1 718 132 0 species Actinobacillus equuli 0 Basfia genus 120 1 2 697331 2 157673 1 species [Mannheimia] succiniciproducens 0 118 296 0 genus 1 2094023 1 738 0 Glaesserella parasuis species 296 416916 1 3 2 genus Aggregatibacter 0 529 732 1 243 Aggregatibacter aphrophilus species 0 284 0 species Aggregatibacter actinomycetemcomitans 1 714 1 476528 171 0 genus 0 Bibersteinia trehalosi species 171 1 47735 genus 0 199 155493 1 199 0 species Gallibacterium anatis 1 750 genus 0 305 214906 1 305 0 Histophilus somni species 1 731 0 genus Pasteurella 1009 1 3 745 7 748 0 species Pasteurella multocida 1 747 754 1 254 Pasteurella dagmatis species 0 12816 order Thiotrichales 0 20 72273 31 1 13 1 135616 24 0 Piscirickettsiaceae family 2880 256 0 genus 1 28884 0 species Hydrogenovibrio crunogenus 256 1 39765 481 0 genus Methylophaga 6 3 1 40222 236 Methylophaga frappieri species 0 754477 1 1 754476 239 0 Methylophaga nitratireducenticrescens species 18 1 4 34067 1204 0 genus Cycloclasticus 477 0 Cycloclasticus zancles species 1 1329899 2 2621467 709 0 no rank 346 0 Cycloclasticus sp. P1 species 1 385025 363 species Cycloclasticus sp. PY97N 0 728003 1 324 genus 0 933 2 Thiomicrospira aerophila species 0 187 92245 1 137 0 Thiomicrospira cyclica species 1 147268 0 genus Piscirickettsia 591 2 1 1237 2 1238 1 589 species Piscirickettsia salmonis 0 881 0 family Thiotrichaceae 1 1 3 135617 1021 1 425 genus 0 425 0 Beggiatoa leptomitoformis species 1 288004 1 40751 455 0 genus 40754 1 455 Thioploca ingrica species 0 Francisellaceae family 0 9035 34064 14 1 11 262 12 1 75 genus Francisella 0 8584 2610885 2 no rank 0 871 465 0 Francisella sp. FSC1006 species 1 1547445 1 475375 0 Francisella sp. MA067296 species 406 351 Francisella hispaniensis species 0 622488 1 1 657445 691 0 species Francisella noatunensis 263 1 species Francisella tularensis 0 1367 954 1 329 species Francisella persica 0 1 573570 741 0 species Francisella sp. TX077310 600 0 Francisella sp. CA97-1460 species 1 1542390 28110 1 986 Francisella philomiragia species 0 2158 0 species Francisella halioticida 1 549298 415 Francisella sp. TX077308 species 0 573569 1 1869285 1 440 genus 0 440 0 Allofrancisella guangzhouensis species 1 594679 order Orbales 0 838 1240482 6 1 1 0 Orbaceae family 837 5 1 1240483 8 Gilliamella genus 0 460 1193503 2 1 2 Gilliamella apicola species 0 458 1196095 1 Frischella genus 0 369 1335631 2 1 3 1267021 1 366 species Frischella perrara 0 0 Vibrionales order 26760 1 43 135623 26 641 42 1 71 family Vibrionaceae 0 26734 1 2042066 0 genus 804 1755811 1 804 species Paraphotobacterium marinum 0 12 1 4 511678 1543 0 Aliivibrio genus 1 668 0 Aliivibrio fischeri species 378 40269 1 species Aliivibrio salmonicida 0 305 1 80852 0 Aliivibrio wodanis species 848 0 Grimontia genus 189 2 1 246861 1 188 0 Grimontia hollisae species 1 673 7059 0 Photobacterium genus 3 4 1 657 1 1295392 0 Photobacterium gaetbulicola species 189 1 74109 362 0 species Photobacterium profundum species Photobacterium damselae 0 6505 38293 1 173 1 30 662 17068 0 Vibrio genus 0 Vibrio scophthalmi species 743 1 45658 676 1 240 species Vibrio fluvialis 0 672 1 1182 species Vibrio vulnificus 0 29494 1 448 Vibrio furnissii species 0 1 52443 611 0 Vibrio tapetis species 243 0 Vibrio breoganii species 1 553239 2025808 1 species Vibrio qinghaiensis 0 225 10 717610 0 species group 8373 691 1 Vibrio natriegens species 0 549 1267 0 Vibrio harveyi species 1 669 1019 Vibrio alginolyticus species 0 663 1 1741 Vibrio campbellii species 0 680 1 species Vibrio rotiferianus 0 1298 190895 1 1 696485 0 Vibrio owensii species 576 224 Vibrio jasicida species 0 766224 1 0 species subgroup 581 2 2315253 50719 1 species Vibrio diabolicus 0 379 1 150340 0 Vibrio antiquarius species 202 1 670 0 Vibrio parahaemolyticus species 1118 1 28173 299 0 species Vibrio nigripulchritudo 212663 1 species Vibrio tasmaniensis 0 572 55601 1 Vibrio anguillarum species 0 698 285 species Vibrio mimicus 0 674 1 species group 0 555 1891919 1 Vibrio tubiashii species 0 555 29498 1 270 Vibrio tritonius species 0 1435069 1 species Vibrio gazogenes 0 355 687 1 species Vibrio hyugaensis 0 351 1534743 1 2614977 2 331 no rank 0 1 2014742 131 0 species Vibrio sp. 2521-89 0 species Vibrio sp. EJY3 200 1 1116375 species Vibrio cholerae 0 466 666 1 Vibrio coralliilyticus species 0 648 190893 1 2 1 4 1934945 399 0 order Immundisolibacterales 397 Immundisolibacteraceae family 0 6 1934946 3 1 391 Immundisolibacter genus 0 3 1934947 2 1 1810504 1 Immundisolibacter cernigliae species 0 388 no rank 0 642 33811 2 species endosymbiont of unidentified scaly snail isolate Monju 0 338 1248727 1 83406 1 304 species gamma proteobacterium HdN1 0 13 118884 3522 0 no rank 3 32036 0 clade 1167 species Calyptogena okutanii thioautotrophic gill symbiont 0 489 410330 1 genus 0 376 1541743 1 Candidatus Ruthia magnifica species 0 376 386487 1 1 113267 0 Bathymodiolus septemdierum thioautotrophic gill symbiont species 302 5 1 2 1524249 265 0 genus Pseudohongiella 1249552 1 260 species Pseudohongiella spirulinae 0 Thiolapillus genus 0 210 1608298 1 2 1 1076588 1 209 species Thiolapillus brandeum 0 0 genus Candidatus Thioglobus 1061 1 3 655184 11 Candidatus Thioglobus autotrophicus species 0 345 1705394 1 0 Candidatus Thioglobus singularis species 705 1 1427364 1 198346 0 clade 575 186490 1 575 Candidatus Baumannia cicadellinicola species 0 3 349742 2 1 244 genus Sedimenticola 0 241 Sedimenticola thiotaurini species 0 1543721 1 73 51 1 135613 9614 0 Chromatiales order 0 no rank 289 2 451214 8 1273155 2 1 289 Thiohalobacter genus 0 585455 1 species Thiohalobacter thiocyanaticus 0 281 1 1 4 255526 284 0 Halothiobacillaceae family 283 0 genus Halothiobacillus 6 1 3 109262 927 1 137 species Halothiobacillus neapolitanus 0 140 no rank 0 2636392 1 1 1860122 140 0 species Halothiobacillus sp. LS2 0 Woeseiaceae family 265 3 1 1738654 4 261 genus Woeseia 0 5 1738655 2 1 1 1548547 256 0 Woeseia oceani species 3 1 449719 2 0 Granulosicoccaceae family 523 521 0 Granulosicoccus genus 9 2 1 437504 512 species Granulosicoccus antarcticus 0 437505 1 326 0 family Wenzhouxiangellaceae 8 1 3 1676141 0 Wenzhouxiangella genus 318 1 2 1676142 5 1579979 1 313 Wenzhouxiangella marina species 0 17 1 72276 26 0 family Ectothiorhodospiraceae 3089 Ectothiorhodospira genus 0 245 1051 1 2 1 1 2684909 244 0 no rank 0 Ectothiorhodospira sp. BSL-9 species 244 1 1442136 2 1765964 1 2 386 Acidihalobacter genus 0 1 160660 0 species Acidihalobacter prosperus 384 106633 6 1 32 Thioalkalivibrio genus 0 1640 2621013 1 no rank 0 219 219 0 species Thioalkalivibrio sp. K90mix 1 396595 186931 1 332 Thioalkalivibrio nitratireducens species 0 species Thioalkalivibrio sulfidiphilus 0 501 1033854 1 106634 1 228 species Thioalkalivibrio versutus 0 Thioalkalivibrio paradoxus species 0 328 108010 1 204 genus 0 85108 1 204 Halorhodospira halophila species 0 1053 1 0 Spiribacter genus 337 3 1 1335745 3 Spiribacter curvatus species 0 185 1335757 1 1 1335746 149 0 Spiribacter salinus species 1 133193 1 2 251 genus Alkalilimnicola 0 250 0 species Alkalilimnicola ehrlichii 1 351052 29 1046 1 18 4765 Chromatiaceae family 0 7 4 1 1227 1021 0 Nitrosococcus genus 1 133539 0 species Nitrosococcus halophilus 186 661 Nitrosococcus watsonii species 0 473531 1 1229 1 167 species Nitrosococcus oceani 0 Marichromatium genus 0 465 85076 2 1 2 1 37487 0 Marichromatium purpuratum species 463 no rank 0 338 82569 1 338 0 species Chromatiaceae bacterium 2141T.STBD.0c.01a 1 1978339 1 13724 2 1 345 genus Thiocystis 0 344 0 Thiocystis violascens species 1 73141 1980513 1 2 1 Candidatus Nitrosoglobus genus 0 260 1 1630141 0 Candidatus Nitrosoglobus terrae species 259 Thioflavicoccus genus 0 357 156885 1 2 9 0 species Thioflavicoccus mobilis 348 1 80679 313 0 Allochromatium genus 3 2 1 85072 1049 1 310 Allochromatium vinosum species 0 0 Thiodictyon genus 1637 1 2 53392 8 Candidatus Thiodictyon syntrophicum species 0 1629 1166950 1 118969 21 1 4 order Legionellales 0 6261 15 15 1 444 5401 0 Legionellaceae family 1 2 465 2 0 genus Tatlockia 284 451 1 282 Tatlockia micdadei species 0 Legionella genus 0 5102 445 12 1 41 1671 0 species Legionella pneumophila 1 446 1 1867846 0 Legionella clemsonensis species 319 1 2005262 0 species Legionella endosymbiont of Polyplax serrata 397 0 species Legionella spiritensis 216 1 452 347 species Legionella waltersii 0 66969 1 0 species Legionella longbeachae 379 1 450 species Legionella oakridgensis 0 289 29423 1 454 Legionella sainthelensi species 0 28087 1 449 1 326 species Legionella hackeliae 0 1 96230 387 0 Legionella fallonii species 0 species Legionella lansingensis 276 1 45067 9 118968 1 5 856 family Coxiellaceae 0 270 0 no rank 1 134284 270 Coxiella-like endosymbiont species 0 1592897 1 genus Coxiella 0 577 776 3 1 7 1 2676648 0 no rank 230 1 325775 0 Coxiella endosymbiont of Amblyomma americanum species 230 Coxiella burnetii species 0 340 777 1 69 135619 1 68 14496 order Oceanospirillales 0 349 0 Hahellaceae family 3 1 3 224379 158481 1 2 3 genus Hahella 0 346 158327 1 species Hahella chejuensis 0 343 0 Oleiphilaceae family 464 3 1 191033 22 0 genus Oleiphilus 442 2 1 141450 3 141451 1 439 species Oleiphilus messinensis 0 0 Saccharospirillaceae family 696 1 4 255527 2 300 Gynuella genus 0 4 1445504 1 2 296 species Gynuella sunshinyii 0 1445505 1 genus 0 394 230494 1 Reinekea forsetii species 0 394 1336806 1 46 28256 31 1 6629 family Halomonadaceae 0 0 Salinicola genus 357 1 2 404432 4 0 species Salinicola tamaricis 353 1 1771309 1005 0 no rank 5 114403 Candidatus Carsonella genus 0 170 114185 2 1 2 168 0 species Candidatus Carsonella ruddii 1 114186 612 genus Candidatus Portiera 0 8 235572 1 2 0 species Candidatus Portiera aleyrodidarum 604 1 91844 genus 0 223 1495768 1 223 species Candidatus Evansia muelleri 0 1495769 1 274 Halotalea genus 0 1 376488 1 2 376489 1 273 Halotalea alkalilenta species 0 0 Kushneria genus 461 3 1 504090 3 species Kushneria marisflavi 0 169 157779 1 698828 1 289 Kushneria konosiri species 0 2 42054 2 1 282 genus Chromohalobacter 0 280 0 species Chromohalobacter salexigens 1 158080 370 0 genus 1 204286 0 Cobetia marina species 370 1 28258 2745 15 1 59 Halomonas genus 0 3834 0 no rank 1894 8 2609666 Halomonas sp. 1513 species 0 355 1883416 1 1 1610576 261 0 Halomonas sp. R57-5 species 203 species Halomonas sp. 'Soap Lake #7' 0 1962264 1 species Halomonas sp. KO116 0 210 1504981 1 1 2136172 0 Halomonas sp. SF2003 species 274 203 Halomonas sp. 'Soap Lake #6' species 0 1949203 1 1118153 1 species Halomonas sp. GFAJ-1 0 187 species Halomonas sp. GT 0 201 1971364 1 407 0 species Halomonas huangheensis 1 1178482 501 0 species Halomonas beimenensis 1 475662 337 species Halomonas aestuarii 0 1897729 1 226 Halomonas chromatireducens species 0 507626 1 166 Halomonas campaniensis species 0 213554 1 115561 1 244 species Halomonas hydrothermalis 0 family Alcanivoracaceae 0 2750 224372 1 9 11 59753 1 6 60 Alcanivorax genus 0 2460 0 species Alcanivorax dieselolei 424 1 285091 343 species Alcanivorax xenomutans 0 1094342 1 59754 1 Alcanivorax borkumensis species 0 665 0 species Alcanivorax pacificus 352 1 1306787 1 2638842 0 no rank 616 0 species Alcanivorax sp. NBRC 101098 616 1 1113728 0 Ketobacter genus 279 2 1 2025617 9 270 0 Ketobacter alkanivorans species 1 1917421 Oceanospirillaceae family 0 2630 135620 1 11 15 402 0 Bacterioplanes genus 3 1 2 1537406 399 0 Bacterioplanes sanyensis species 1 1249553 genus Marinobacterium 0 667 48075 1 2 2 665 0 species Marinobacterium aestuarii 1 1821621 925 0 genus Marinomonas 7 4 1 28253 119864 1 262 species Marinomonas mediterranea 0 405 no rank 0 196814 1 400668 1 Marinomonas sp. MWYL1 species 0 405 species Marinomonas posidonica 0 251 936476 1 307 0 genus 1 187492 1 187493 307 0 Thalassolituus oleivorans species 1 188907 0 genus 314 188908 1 314 species Oleispira antarctica 0 family Kangiellaceae 0 909 1920240 6 1 7 9 5 1 261963 902 0 Kangiella genus 1144748 1 185 Kangiella sediminilitoris species 0 1 261964 240 0 Kangiella koreensis species 0 species Kangiella profundi 273 1 1561924 Kangiella geojedonensis species 0 195 914150 1 75 135622 102 1 32978 Alteromonadales order 0 486 0 family Moritellaceae 4 3 1 267891 genus Moritella 0 482 58050 2 1 7 475 0 Moritella viscosa species 1 80854 25 72275 1 28 9781 family Alteromonadaceae 0 89404 3 1 1 Glaciecola genus 0 638 0 no rank 297 1 2618684 297 species Glaciecola sp. 4H-3-7+YE-5 0 983545 1 0 Glaciecola nitratireducens species 340 1 300231 1 261825 199 0 genus 0 Agarivorans gilvus species 199 1 680279 genus Alteromonas 0 5232 226 1 10 58 0 species Alteromonas stellipolaris 361 1 233316 2614992 3 959 no rank 0 1 1777491 0 Alteromonas sp. Mac1 species 258 1 1917158 0 species Alteromonas sp. RW2A1 357 species Alteromonas sp. MB-3u-76 0 344 2058133 1 322 species Alteromonas naphthalenivorans 0 715451 1 287094 1 species Alteromonas addita 0 334 219 Alteromonas australica species 0 589873 1 913 0 species Alteromonas mediterranea 1 314275 2066 0 species Alteromonas macleodii 1 28108 0 genus Marinobacter 2500 1 10 2742 55 0 Marinobacter adhaerens species 227 1 1033846 3 83889 743 0 no rank 1 1749259 257 0 species Marinobacter sp. LQ44 235 0 Marinobacter sp. CP1 species 1 1671721 1 490759 0 species Marinobacter sp. BSs20148 251 1874317 1 Marinobacter salinus species 0 232 220 0 species Marinobacter similis 1 1420916 2743 1 species Marinobacter hydrocarbonoclasticus 0 380 Marinobacter salarius species 0 395 1420917 1 species Marinobacter psychrophilus 0 248 330734 1 391 0 genus 1 1751872 1 1526571 391 0 species Lacimicrobium alkaliphilum 796 genus Paraglaciecola 0 2 1621534 2 1 326544 1 794 Paraglaciecola psychrophila species 0 25 1 267888 14 0 family Pseudoalteromonadaceae 8790 24 1 53246 142 0 genus Pseudoalteromonas 8776 343 Pseudoalteromonas luteoviolacea species 0 43657 1 1 247523 0 species Pseudoalteromonas aliena 299 0 Pseudoalteromonas phenolica species 292 1 161398 314281 1 400 species Pseudoalteromonas tunicata 0 1348114 1 species Pseudoalteromonas piratica 0 280 species Pseudoalteromonas haloplanktis 0 352 228 1 394751 1 302 species Pseudoalteromonas arctica 0 1 28109 350 0 Pseudoalteromonas nigrifaciens species 0 Pseudoalteromonas espejiana species 246 1 28107 1 152297 276 0 species Pseudoalteromonas issachenkonii 176102 1 286 Pseudoalteromonas agarivorans species 0 217 Pseudoalteromonas rubra species 0 43658 1 258 species Pseudoalteromonas marina 0 267375 1 0 Pseudoalteromonas spongiae species 389 1 298657 166935 1 Pseudoalteromonas translucida species 0 323 599 Pseudoalteromonas atlantica species 0 288 1 no rank 0 2994 194690 5 1836 Pseudoalteromonas sp. NC201 species 0 1514074 1 234831 1 Pseudoalteromonas sp. SM9913 species 0 369 248 0 species Pseudoalteromonas sp. 13-15 1 1761891 1 1720343 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 266 1 283699 0 species Pseudoalteromonas sp. Bsw20308 275 252 Pseudoalteromonas tetraodonis species 0 43659 1 43662 1 Pseudoalteromonas piscicida species 0 176 3122 0 family Colwelliaceae 7 1 8 267889 1518149 1 440 genus 0 1763536 1 440 species Thalassotalea crassostreae 0 Colwellia genus 0 2675 28228 1 6 20 3 196834 0 no rank 1583 1 58049 494 0 species Colwellia sp. MT41 0 species Colwellia sp. PAMC 21821 584 1 1816219 1 1816218 505 0 Colwellia sp. PAMC 20917 species 1 1967665 578 0 species Colwellia beringensis 28229 1 species Colwellia psychrerythraea 0 494 8818 0 family Shewanellaceae 13 1 25 267890 8805 genus Shewanella 0 80 22 1 24 0 species Shewanella amazonensis 147 1 60478 0 Shewanella pealeana species 217 1 70864 121 species Shewanella marisflavi 0 260364 1 1 60961 0 Shewanella woodyi species 424 0 Shewanella baltica species 955 1 62322 359303 1 157 Shewanella loihica species 0 1 192073 328 0 species Shewanella denitrificans 404011 1 231 Shewanella piezotolerans species 0 Shewanella sediminis species 0 399 271097 1 70863 1 153 species Shewanella oneidensis 0 2018305 1 164 species Shewanella bicestrii 0 1 225848 774 0 Shewanella psychrophila species 1 93973 0 Shewanella japonica species 512 968 0 Shewanella violacea species 1 60217 0 species Shewanella frigidimarina 397 1 56812 Shewanella putrefaciens species 0 197 24 1 0 no rank 1159 6 196818 species Shewanella sp. W3-18-1 0 206 351745 1 186 species Shewanella sp. MR-7 0 60481 1 2059264 1 269 species Shewanella sp. Pdp11 0 139 0 species Shewanella sp. MR-4 1 60480 94122 1 Shewanella sp. ANA-3 species 0 201 158 0 Shewanella sp. WE21 species 1 2029986 0 Shewanella halifaxensis species 1422 1 271098 0 Ferrimonadaceae family 207 1 3 267892 1 44011 1 2 4 Ferrimonas genus 0 206 44012 1 species Ferrimonas balearica 0 202 1 267893 6 1 673 family Idiomarinaceae 0 0 genus Idiomarina 672 1 5 135575 7 0 species Idiomarina loihiensis 165 1 135577 species Idiomarina piscisalsi 0 172 1096243 1 0 no rank 328 2 2614829 175 Idiomarina sp. X4 species 0 2055892 1 1 2100422 0 species Idiomarina sp. OT37-5b 153 0 Psychromonadaceae family 1026 3 1 267894 1 1025 0 genus 2 67572 485 no rank 0 2614957 1 314282 1 species Psychromonas sp. CNPT3 0 485 0 species Psychromonas ingrahamii 540 1 357794 175 0 order Cardiobacteriales 1 4 1 135615 2 1 3 868 174 0 Cardiobacteriaceae family 2 869 1 2 172 Dichelobacter genus 0 870 1 Dichelobacter nodosus species 0 170 129 1 72274 167 0 Pseudomonadales order 54779 240 135621 1 86 40106 family Pseudomonadaceae 0 3 351 1085 0 subfamily 0 Azotobacter genus 1085 3 1 352 13 1 354 350 0 species Azotobacter vinelandii 1 353 0 species Azotobacter chroococcum 722 Pseudomonas genus 0 38514 286 80 1 830 211 0 Pseudomonas entomophila species 1 312306 species Pseudomonas psychrotolerans 0 332 237610 1 species Pseudomonas alkylphenolica 0 181 237609 1 244566 1 140 Pseudomonas lurida species 0 136845 6 6040 species group 0 1 47885 0 Pseudomonas oryzihabitans species 267 0 Pseudomonas putida species 3412 1 303 0 species Pseudomonas plecoglossicida 252 1 70775 947 0 Pseudomonas mosselii species 1 78327 76759 1 791 species Pseudomonas monteilii 0 371 0 species Pseudomonas fulva 1 47880 30 196821 0 no rank 7428 1 2018067 0 species Pseudomonas sp. FDAARGOS_380 158 189 0 species Pseudomonas sp. LG1D9 1 2083054 213 species Pseudomonas sp. SWI6 0 2083051 1 2083055 1 216 species Pseudomonas sp. LH1G9 0 1 1338689 187 0 Pseudomonas sp. JY-Q species 226 Pseudomonas sp. CCOS 191 species 0 1649877 1 1 1283291 0 species Pseudomonas sp. URMO17WK12:I11 440 Pseudomonas sp. St29 species 0 222 1500687 1 69328 1 159 Pseudomonas sp. VLB120 species 0 1 1294143 307 0 species Pseudomonas sp. ATCC 13867 204 0 Pseudomonas sp. M30-35 species 1 1981174 0 species Pseudomonas sp. CC6-YY-74 435 1 1930532 1 2083052 227 0 species Pseudomonas sp. SWI36 1259844 1 198 species Pseudomonas sp. FGI182 0 0 Pseudomonas sp. StFLB209 species 233 1 1028989 318 0 species Pseudomonas sp. S-6-2 1 1931241 1 1856685 246 0 species Pseudomonas sp. TCU-HL1 257 0 Pseudomonas sp. XWY-1 species 1 2069256 1 2067572 237 0 species Pseudomonas sp. NC02 250 species Pseudomonas sp. LPH1 0 1898684 1 177 0 Pseudomonas sp. SWI44 species 1 2083053 species Pseudomonas sp. Os17 0 244 1500686 1 0 Pseudomonas sp. UW4 species 172 1 1207075 0 species Pseudomonas sp. HLS-6 172 1 2049589 234 0 Pseudomonas sp. DR 5-09 species 1 1534110 216 0 species Pseudomonas sp. PONIH3 1 1636610 1659194 1 species Pseudomonas sp. GR 6-02 0 238 Pseudomonas sp. MRSN12121 species 0 272 1611770 1 1415630 1 602 species Pseudomonas sp. TKP 0 1 1827300 0 species Pseudomonas sp. MYb193 179 5755 0 species group 9 136843 47878 1 species Pseudomonas azotoformans 0 643 1 200450 514 0 Pseudomonas trivialis species 1 380021 0 species Pseudomonas protegens 455 1 76758 0 Pseudomonas orientalis species 151 76761 1 species Pseudomonas veronii 0 217 294 1 3252 Pseudomonas fluorescens species 0 1 47879 161 0 species Pseudomonas corrugata 200451 1 171 Pseudomonas poae species 0 75612 1 191 species Pseudomonas mandelii 0 252 0 species Pseudomonas alcaliphila 1 101564 157783 1 Pseudomonas cremoricolorata species 0 187 Pseudomonas silesiensis species 0 466 1853130 1 species group 0 4006 136849 8 no rank 0 230 2775504 1 species Pseudomonas sp. Lz4W 0 230 1206777 1 1 251701 0 Pseudomonas syringae group genomosp. 3 species 559 Pseudomonas viridiflava species 0 182 33069 1 184 Pseudomonas avellanae species 0 46257 1 2 251698 816 0 species subgroup 322 species Pseudomonas amygdali 0 47877 1 494 Pseudomonas savastanoi species 0 29438 1 182 Pseudomonas cichorii species 0 36746 1 1 251695 0 species subgroup 1853 317 1 1853 species Pseudomonas syringae 0 544 species Pseudomonas frederiksbergensis 0 104087 1 0 species Pseudomonas koreensis 459 1 198620 65741 1 species Pseudomonas knackmussii 0 340 225 0 Pseudomonas rhizosphaerae species 1 216142 species group 0 1750 136842 2 1 296 0 Pseudomonas fragi species 351 587753 1 Pseudomonas chlororaphis species 0 1399 1 930166 480 0 Pseudomonas brassicacearum species species group 0 5463 136841 6 0 Pseudomonas alcaligenes species 278 1 43263 364 Pseudomonas resinovorans species 0 53412 1 0 species Pseudomonas mendocina 1034 1 300 589 0 species subgroup 1 1232139 0 Pseudomonas furukawaii species 589 1 1149133 287 1 2510 Pseudomonas aeruginosa species 0 1 53408 0 Pseudomonas citronellolis species 688 species Pseudomonas versuta 0 180 1788301 1 0 Pseudomonas parafulva species 477 1 157782 0 Pseudomonas cerasi species 354 1 1583341 145 0 species Pseudomonas antarctica 1 219572 2 136846 2269 0 species group 2005 species subgroup 0 578833 1 1 316 2005 0 Pseudomonas stutzeri species 1 74829 0 Pseudomonas balearica species 264 1849530 2 1 2 genus Oblitimonas 0 267 265 0 Oblitimonas alkaliphila species 1 1697053 24 1 42 468 14506 0 family Moraxellaceae 469 1 25 115 Acinetobacter genus 0 10490 1 108981 0 Acinetobacter schindleri species 302 1324350 1 431 Acinetobacter equi species 0 5 909768 5035 0 species group 1 48296 0 species Acinetobacter pittii 1740 species Acinetobacter nosocomialis 0 509 106654 1 470 1 species Acinetobacter baumannii 0 1830 1 471 623 0 species Acinetobacter calcoaceticus 1 1785128 333 0 species Acinetobacter lactucae 1 40215 399 0 species Acinetobacter junii species Acinetobacter soli 0 281 487316 1 227 Acinetobacter radioresistens species 0 40216 1 347 species Acinetobacter haemolyticus 0 29430 1 1 106648 297 0 species Acinetobacter bereziniae 1 756892 0 Acinetobacter indicus species 159 1778 no rank 0 196816 7 species Acinetobacter sp. TGL-Y2 0 271 1407071 1 231 Acinetobacter sp. SWBY1 species 0 2079596 1 202 0 species Acinetobacter sp. NCu2D-2 1 1608473 395 0 Acinetobacter sp. ACNIH1 species 1 1636603 0 Acinetobacter sp. LoGeW2-3 species 166 1 1808001 1 1646498 0 Acinetobacter sp. TTH0-4 species 262 1 1758189 251 0 Acinetobacter sp. ACNIH2 species 1 1789224 254 0 species Acinetobacter larvae 0 Acinetobacter oleivorans species 373 1 1148157 0 species Acinetobacter johnsonii 207 1 40214 285 species 0 202950 1 strain Acinetobacter sp. ADP1 0 285 62977 1 genus Moraxella 0 1395 475 1 5 11 Moraxella bovoculi species 0 273 386891 1 144 Moraxella ovis species 0 29433 1 359 0 species Moraxella catarrhalis 1 480 1 34062 608 0 species Moraxella osloensis Psychrobacter genus 0 2597 497 1 11 42 330922 1 species Psychrobacter cryohalolentis 0 213 0 Psychrobacter urativorans species 268 1 45610 6 196806 1519 0 no rank 1028416 1 species Psychrobacter sp. DAB_AL43B 0 230 1699624 1 200 species Psychrobacter sp. P11G5 0 524 0 species Psychrobacter sp. PRwf-1 1 349106 203 species Psychrobacter sp. G 0 571800 1 species Psychrobacter sp. P2G3 0 193 1699622 1 1 1720344 169 0 species Psychrobacter sp. AntiMn-1 1 334543 174 0 species Psychrobacter arcticus 381 0 Psychrobacter alimentarius species 1 261164 29839 0 Xanthomonadales order 125 1 52 135614 27362 family Xanthomonadaceae 0 176 32033 1 37 2370 1 genus 0 1598 1 2371 1598 0 Xylella fastidiosa species 69 9 1 40323 6394 0 genus Stenotrophomonas 196198 4 no rank 0 1794 1904944 1 203 species Stenotrophomonas sp. LM091 0 Stenotrophomonas sp. WZN-1 species 0 445 2005046 1 1793721 1 species Stenotrophomonas sp. KCTC 12332 0 471 675 Stenotrophomonas sp. MYb57 species 0 1827305 1 species Stenotrophomonas rhizophila 0 274 216778 1 128780 1 691 species Stenotrophomonas acidaminiphila 0 995085 1 3106 species group 0 40324 1 species Stenotrophomonas maltophilia 0 3106 0 Stenotrophomonas nitritireducens species 460 1 83617 13881 0 genus Xanthomonas 210 17 1 338 456327 1 species Xanthomonas euvesicatoria 0 344 species Xanthomonas albilineans 0 290 29447 1 383 0 Xanthomonas sacchari species 1 56458 347 1 2753 species Xanthomonas oryzae 0 0 species Xanthomonas phaseoli 348 1 1985254 1 366650 307 0 species Xanthomonas alfalfae species group 0 3627 643453 2 species Xanthomonas citri 0 2895 346 1 1 366648 732 0 Xanthomonas fuscans species 561 0 Xanthomonas vesicatoria species 1 56460 442694 1 314 species Xanthomonas perforans 0 394 Xanthomonas hortorum species 0 56454 1 260 0 species Xanthomonas axonopodis 1 53413 1136 0 species Xanthomonas translucens 1 343 48664 1 590 Xanthomonas fragariae species 0 1 339 0 species Xanthomonas campestris 2158 206 Xanthomonas vasicola species 0 56459 1 83618 3 1 4 genus Pseudoxanthomonas 0 975 0 Pseudoxanthomonas suwonensis species 672 1 314722 species Pseudoxanthomonas spadix 0 299 415229 1 236 genus 0 83614 1 1 2006110 236 0 Luteimonas sp. 100111 species 8 5 1 68 4102 0 genus Lysobacter 84531 1 species Lysobacter antibioticus 0 1787 435897 1 species Lysobacter capsici 0 1197 473 0 Lysobacter enzymogenes species 1 69 1 262324 637 0 species Lysobacter gummosus 17 14 1 1775411 2352 0 Rhodanobacteraceae family 2233801 1 genus 0 194 2021234 1 194 Xanthomonadales bacterium D13 species 0 0 Dyella genus 833 1 4 231454 10 0 species Dyella japonica 307 1 231455 231 Dyella jiangningensis species 0 1379159 1 285 0 Dyella thiooxydans species 1 445710 242605 1 2 5 genus Luteibacter 0 240 242606 1 species Luteibacter rhizovicinus 0 235 5 2 1 70411 242 0 genus Frateuria 0 species Frateuria aurantia 237 1 81475 323413 1 2 5 genus Dokdonella 0 414 409 0 species Dokdonella koreensis 1 323415 412 Rhodanobacter genus 0 3 75309 1 2 1 666685 0 Rhodanobacter denitrificans species 409 135618 1 13 15 order Methylococcales 0 2259 12 1 403 12 0 Methylococcaceae family 2244 501 genus Methylomicrobium 0 4 39773 1 2 271065 1 Methylomicrobium alcaliphilum species 0 497 1385 Methylomonas genus 0 30 416 5 1 2608980 1 no rank 0 278 1 1727196 0 species Methylomonas sp. DH-1 278 1538553 1 627 Methylomonas denitrificans species 0 Methylomonas koyamae species 0 256 702114 1 1 421 194 0 Methylomonas methanica species 177 0 genus Methylovulum 3 2 1 762296 174 0 Methylovulum psychrotolerans species 1 1704499 169 genus Methylococcus 0 3 413 2 1 0 species Methylococcus capsulatus 166 1 414 5 1 6 1692040 646 0 order Acidiferrobacterales 7 1692041 1 5 641 family Acidiferrobacteraceae 0 1692042 1 2 3 genus Sulfurifustis 0 415 412 Sulfurifustis variabilis species 0 1675686 1 Sulfuricaulis genus 0 219 1744881 1 2 6 213 species Sulfuricaulis limicola 0 1620215 1 10 1706369 27 1 5343 Cellvibrionales order 0 0 Halieaceae family 923 4 1 1706372 7 12 1217416 3 1 916 genus Halioglobus 0 Halioglobus japonicus species 0 500 930805 1 0 species Halioglobus pacificus 404 1 930806 1 11 1706371 22 0 Cellvibrionaceae family 2308 1 2 2425 2 0 Teredinibacter genus 322 1 2426 320 0 species Teredinibacter turnerae 444 genus Agarilytica 0 1 2036021 2 1 0 Agarilytica rhodophyticola species 443 1 1737490 14 1 4 10 922 0 genus Cellvibrio no rank 0 634 2624793 2 337 0 species Cellvibrio sp. PSBB006 1 1987723 species Cellvibrio sp. PSBB023 0 297 1945512 1 274 Cellvibrio japonicus species 0 155077 1 447467 1 227 genus 0 447471 1 Simiduia agarivorans species 0 227 371 genus 0 316625 1 1 86304 371 0 species Saccharophagus degradans 21 6 1 1706375 1251 0 Spongiibacteraceae family 2 1 1434050 2 0 Zhongshania genus 321 319 0 Zhongshania aliphaticivorans species 1 1470434 1 1084558 579 0 genus 579 0 Oceanicoccus sagamiensis species 1 716816 Spongiibacter genus 0 330 630749 1 2 3 2631504 1 no rank 0 327 species Spongiibacter sp. IMCC21906 0 327 1620392 1 Microbulbiferaceae family 0 851 1706373 5 1 7 844 genus Microbulbifer 0 19 48073 4 1 1 260552 0 species Microbulbifer agarilyticus 210 287 species Microbulbifer aggregans 0 1769779 1 1 252514 328 0 species Microbulbifer thermotolerans 91347 1 245 219 Enterobacterales order 0 75437 168 Budviciaceae family 0 1 1903416 2 1 167 0 genus 1 82984 1 82985 167 0 Pragia fontium species 0 family Yersiniaceae 13028 39 1 1903411 29 3 1745211 1 2 159 Chania genus 0 1 1639108 156 0 Chania multitudinisentens species Yersinia genus 0 6482 629 1 13 72 1649845 3 species group 0 3384 1 632 974 0 species Yersinia pestis 367190 1 species Yersinia similis 0 1638 1 633 772 0 species Yersinia pseudotuberculosis 1 29486 281 0 species Yersinia ruckeri 1 631 264 0 species Yersinia intermedia 1 2653513 0 no rank 247 1 1839800 247 0 species Yersinia sp. FDAARGOS_228 1 29484 469 0 species Yersinia frederiksenii 29485 1 189 species Yersinia rohdei 0 273 species Yersinia aldovae 0 29483 1 0 Yersinia aleksiciae species 170 1 263819 0 species Yersinia enterocolitica 920 1 630 species Yersinia kristensenii 0 213 28152 1 613 16 1 135 genus Serratia 0 5731 483 Serratia fonticola species 0 47917 1 263 0 species Serratia rubidaea 1 61652 255 0 Serratia liquefaciens species 1 614 145 0 species Serratia proteamaculans 1 28151 species Serratia plymuthica 0 446 82996 1 615 1 1831 species Serratia marcescens 0 229 Serratia ficaria species 0 61651 1 0 no rank 1944 8 2647522 170 species Serratia sp. AS12 0 768490 1 1 671990 0 Serratia sp. FGI94 species 203 1327989 1 species Serratia sp. FS14 0 233 1 2033438 182 0 Serratia sp. MYb239 species 1 488142 0 species Serratia sp. SCBI 675 170 Serratia sp. AS13 species 0 768493 1 1758196 1 186 species Serratia sp. SSNIH1 0 125 Serratia sp. ATCC 39006 species 0 104623 1 4 1 34037 7 0 Rahnella genus 456 129 0 Rahnella aquatilis species 1 34038 no rank 0 320 2635087 2 0 species Rouxiella sp. ERMR1:05 181 1 1805933 1 741091 0 Rahnella sp. Y9602 species 139 170 0 genus Gibbsiella 4 2 1 929812 166 0 species Gibbsiella quercinecans 1 929813 genus Rouxiella 0 1 1565532 1 16 22 1 1903414 5027 0 family Morganellaceae 0 genus Photorhabdus 758 4 1 29487 6 1 29488 237 0 species Photorhabdus luminescens 1 574560 218 0 species Photorhabdus temperata 291112 1 297 Photorhabdus asymbiotica species 0 Proteus genus 0 1517 583 1 3 7 585 1 521 Proteus vulgaris species 0 species Proteus mirabilis 0 989 584 1 419 Arsenophonus genus 0 2 637 1 2 0 species Arsenophonus symbiont of Lipoptena fortisetosa 417 1 634113 626 1 6 15 Xenorhabdus genus 0 1181 1 628 175 0 species Xenorhabdus nematophila 0 species Xenorhabdus bovienii 403 1 40576 species Xenorhabdus hominickii 0 203 351679 1 1 351671 0 Xenorhabdus doucetiae species 137 40577 1 248 species Xenorhabdus poinarii 0 244 0 genus Morganella 6 2 1 581 1 582 238 0 Morganella morganii species 892 0 genus Providencia 1 4 1 586 194 0 species Providencia alcalifaciens 1 126385 588 1 411 Providencia stuartii species 0 587 1 Providencia rettgeri species 0 286 0 Erwiniaceae family 9349 28 1 1903409 22 51228 1 2 10 Wigglesworthia genus 0 782 0 species Wigglesworthia glossinidia 772 1 51229 11 1 53335 68 0 Pantoea genus 2473 570 no rank 0 2630326 3 592316 1 species Pantoea sp. At-9b 0 199 1 1484158 147 0 species Pantoea sp. PSNIH1 224 species Pantoea sp. PSNIH2 0 1484157 1 1891675 1 151 Pantoea alhagi species 0 319 species group 0 1654067 1 0 species Pantoea agglomerans 319 1 549 0 species Pantoea ananatis 318 1 553 1235990 1 287 Candidatus Pantoea carbekii species 0 460 Pantoea vagans species 0 470934 1 133 0 Pantoea rwandensis species 1 1076550 species Pantoea stewartii 0 167 66269 1 0 Erwinia genus 1170 8 1 551 14 1 1922217 0 species Candidatus Erwinia sp. ErCipseudotaxifoliae 163 0 species Erwinia pyrifoliae 131 1 79967 0 no rank 143 1 2622719 215689 1 species Erwinia sp. Ejp617 0 143 1 552 136 0 Erwinia amylovora species 264 Erwinia billingiae species 0 182337 1 Erwinia tasmaniensis species 0 159 338565 1 160 0 Erwinia gerundensis species 1 1619313 12 2 1 32199 4215 0 Buchnera genus 4203 0 species Buchnera aphidicola 1 9 168 genus Tatumella 0 5 82986 2 1 Tatumella citrea species 0 163 53336 1 2 2100764 519 0 genus 214 Pantoea gaviniae species 0 665914 1 1 665913 305 0 Pantoea calida species 4558 family Pectobacteriaceae 0 13 1903410 1 20 1457 0 Pectobacterium genus 21 1 6 122277 199 species Pectobacterium wasabiae 0 55208 1 554 1 Pectobacterium carotovorum species 0 409 171 0 Pectobacterium atrosepticum species 1 29471 0 species Pectobacterium polaris 142 1 2042057 0 species Pectobacterium parmentieri 515 1 1905730 8 71655 1 2 214 Brenneria genus 0 0 species Brenneria goodwinii 206 1 1109412 16 84565 1 5 1456 genus Sodalis 0 63612 1 188 species Sodalis glossinidius 0 1486991 1 313 Candidatus Sodalis pierantonius species 0 1239307 1 237 Sodalis praecaptivus species 0 1 1929246 702 0 species Sodalis endosymbiont of Henestaris halophilus 0 genus Dickeya 1418 6 1 204037 25 species Dickeya dianthicola 0 155 204039 1 1 204038 158 0 species Dickeya dadantii 1089444 1 327 Dickeya solani species 0 1778540 1 161 Dickeya fangzhongdai species 0 Dickeya zeae species 0 592 204042 1 309 0 no rank 2 451511 Plesiomonas genus 0 309 702 1 2 5 0 species Plesiomonas shigelloides 304 1 703 34789 family Enterobacteriaceae 0 230 543 118 1 1335483 1 129 genus 0 species Shimwellia blattae 0 129 563 1 1 10 570 108 0 genus Klebsiella 7282 1 2026240 0 Klebsiella quasivariicola species 165 0 Klebsiella michiganensis species 537 1 1134687 1463165 1 279 species Klebsiella quasipneumoniae 0 573 1 species Klebsiella pneumoniae 0 3009 885 0 Klebsiella oxytoca species 1 571 no rank 0 341 2608929 2 1905288 1 species Klebsiella sp. LTGPAF-6F 0 185 156 species Klebsiella sp. M5al 0 1934254 1 423 Klebsiella variicola species 0 244366 1 548 1 1535 Klebsiella aerogenes species 0 186 genus Shigella 0 8 620 1 4 1 622 0 Shigella dysenteriae species 91 no rank 0 48 2629414 1 1 1813821 0 Shigella sp. PAMC 28760 species 48 623 1 39 species Shigella flexneri 0 4907 0 Salmonella genus 1 1 3 590 4638 species Salmonella enterica 0 28901 1 268 0 Salmonella bongori species 1 54736 1 4 1330545 5 0 Lelliottia genus 489 115 species Lelliottia nimipressuralis 0 69220 1 1 61646 281 0 Lelliottia amnigena species 0 Lelliottia jeotgali species 88 1 1907578 19 191675 3262 0 no rank 19 84563 0 clade 3262 1630 0 clade 7 84564 1630 0 genus Candidatus Blochmannia 13 7 1 203804 337 0 species Candidatus Blochmannia vafer 1 251535 203907 1 Candidatus Blochmannia floridanus species 0 301 0 species Candidatus Blochmannia pennsylvanicus 271 1 101534 711328 2 449 no rank 0 1 1505596 223 0 species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 1505597 0 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus species 226 1 251542 259 0 species Candidatus Blochmannia chromaiodes 1906661 1 genus 0 175 175 Candidatus Gullanella endobia species 0 1070130 1 genus 0 404 1682492 1 species Candidatus Tachikawaea gelatinosa 0 404 1410383 1 0 clade 577 4 146507 0 Candidatus Hamiltonella genus 268 2 1 568987 2 1 138072 0 species Candidatus Hamiltonella defensa 266 205 species secondary endosymbiont of Heteropsylla cubana 0 134287 1 0 secondary endosymbiont of Ctenarytaina eucalypti species 104 1 1199245 1906659 1 66 genus 0 1778263 1 66 species Candidatus Hoaglandella endobia 0 0 genus Candidatus Mikella 193 1 2 1906660 1 192 0 Candidatus Mikella endobia species 1 1778264 1 199891 160 0 clade 0 species secondary endosymbiont of Trabutina mannipara 160 1 1835721 1 1906657 2 1 57 Candidatus Doolittlea genus 0 0 Candidatus Doolittlea endobia species 56 1 1778262 5 36866 1482 0 no rank 1 693444 0 species Enterobacteriaceae bacterium strain FGI 57 78 Enterobacteriaceae bacterium ENNIH2 species 0 131 1920109 1 0 species Enterobacteriaceae bacterium ENNIH1 151 1 2066051 0 Plautia stali symbiont species 1006 1 891974 1 1920128 116 0 species Enterobacteriaceae bacterium ENNIH3 11 5 1 561 5620 0 genus Escherichia 0 Escherichia coli species 5117 1 562 564 1 Escherichia fergusonii species 0 86 106 species Escherichia marmotae 0 1499973 1 208962 1 species Escherichia albertii 0 300 160674 3 1 4 Raoultella genus 0 767 54291 1 604 Raoultella ornithinolytica species 0 1 575 159 0 Raoultella planticola species 1 579 157 0 genus 1 61648 0 species Kluyvera intermedia 157 1048757 1 genus 0 77 77 species Candidatus Moranella endobia 0 1048758 1 1 158483 1 2 477 Cedecea genus 0 158822 1 476 species Cedecea neteri 0 2667 genus Citrobacter 0 61 544 14 1 1328 0 species group 7 1344959 211 species Citrobacter braakii 0 57706 1 109 species Citrobacter freundii complex sp. CFNIH3 0 2077147 1 112 Citrobacter freundii complex sp. CFNIH2 species 0 2066049 1 2077148 1 Citrobacter freundii complex sp. CFNIH4 species 0 98 160 species Citrobacter werkmanii 0 67827 1 87 0 Citrobacter freundii complex sp. CFNIH9 species 1 2077149 1 546 551 0 Citrobacter freundii species 1 67825 139 0 Citrobacter rodentium species 35703 1 species Citrobacter amalonaticus 0 288 67824 1 508 species Citrobacter farmeri 0 0 no rank 186 2 2644389 1 1920110 118 0 species Citrobacter sp. CFNIH10 1702170 1 68 Citrobacter sp. FDAARGOS_156 species 0 157 Citrobacter koseri species 0 545 1 0 Cronobacter genus 1157 8 1 413496 17 535744 1 150 species Cronobacter universalis 0 28141 1 Cronobacter sakazakii species 0 266 174 0 Cronobacter dublinensis species 1 413497 413502 1 133 species Cronobacter turicensis 0 0 species Cronobacter malonaticus 136 1 413503 species Cronobacter muytjensii 0 121 413501 1 0 Cronobacter condimenti species 160 1 1163710 4 5 1 1330547 678 0 Kosakonia genus Kosakonia sacchari species 0 143 1158459 1 1 208223 96 0 Kosakonia cowanii species 1 283686 0 Kosakonia radicincitans species 257 0 species Kosakonia oryzae 178 1 497725 2 1 409304 3 0 Candidatus Ishikawaella genus 319 species Candidatus Ishikawaella capsulata 0 316 168169 1 22 1 547 138 0 genus Enterobacter 3613 12 354276 0 species group 2639 481 158836 3 1 679 Enterobacter hormaechei species 0 1 1296536 59 0 subspecies Enterobacter xiangfangensis 0 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 139 1 1812934 1 299767 0 species Enterobacter ludwigii 67 79 0 species Enterobacter kobei 1 208224 0 species Enterobacter cloacae complex 'Hoffmann cluster IV' 92 1 1812935 550 1 1162 species Enterobacter cloacae 0 271 0 Enterobacter asburiae species 1 61645 3 2757714 207 0 no rank 1 2077137 0 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 65 1 1915310 0 Enterobacter cloacae complex sp. ECNIH7 species 72 Enterobacter cloacae complex bacterium species 0 70 2027919 1 1 69218 0 Enterobacter cancerogenus species 82 9 2608935 0 no rank 836 68 Enterobacter sp. ODB01 species 0 1827481 1 1977566 1 Enterobacter sp. Crenshaw species 0 62 1 1868135 61 0 species Enterobacter sp. HK169 1914861 1 107 species Enterobacter sp. SA187 0 Enterobacter sp. R4-368 species 0 115 1166130 1 1 1692238 0 Enterobacter sp. FY-07 species 113 2051905 1 Enterobacter sp. CRENT-193 species 0 98 69 0 Enterobacter sp. E20 species 1 1560339 species Enterobacter sp. 638 0 143 399742 1 22 83654 4 1 557 Leclercia genus 0 2 2627398 324 0 no rank 0 Leclercia sp. LSNIH1 species 146 1 1920114 1 1920116 0 Leclercia sp. LSNIH3 species 178 83655 1 211 species Leclercia adecarboxylata 0 1330546 2 genus 0 524 1 61647 343 0 species Pluralibacter gergoviae 1334193 1 species [Enterobacter] lignolyticus 0 181 1 2 401618 3 0 Candidatus Riesia genus 209 0 Candidatus Riesia pediculicola species 206 1 401619 family Hafniaceae 0 7990 1903412 1 13 17 0 Edwardsiella genus 7339 8 1 635 53 1 1821960 387 0 species Edwardsiella anguillarum 109 0 Edwardsiella hoshinae species 1 93378 no rank 0 646 2676541 2 325 species Edwardsiella sp. LADL05-105 0 1650654 1 321 Edwardsiella sp. EA181011 species 0 1578828 1 5627 0 Edwardsiella tarda species 1 636 Edwardsiella ictaluri species 0 271 67780 1 246 Edwardsiella piscicida species 0 1263550 1 7 3 1 568 442 0 Hafnia genus 1 2621980 0 no rank 120 1 1848580 120 0 Hafnia sp. CBA7124 species 315 species Hafnia alvei 0 569 1 82982 1 192 genus 0 species Obesumbacterium proteus 0 192 82983 1 order Aeromonadales 0 7311 135624 1 29 27 0 family Aeromonadaceae 7284 28 1 84642 41 5 2 1 347533 450 0 Zobellella genus species Zobellella denitrificans 0 445 347534 1 150 0 Tolumonas genus 1 2 1 43947 149 Tolumonas auensis species 0 43948 1 6 225143 1 3 443 genus Oceanisphaera 0 1416627 1 species Oceanisphaera profunda 0 262 1903694 1 175 Oceanisphaera sp. AMac2203 species 0 genus Aeromonas 0 5857 642 18 1 204 1 645 845 0 Aeromonas salmonicida species 1 196024 182 0 Aeromonas dhakensis species 1 654 0 Aeromonas veronii species 573 159 0 species Aeromonas rivipollensis 1 948519 257493 8 1792 no rank 0 1 1636608 155 0 species Aeromonas sp. ASNIH3 1 1636609 306 0 species Aeromonas sp. ASNIH4 1758179 1 Aeromonas sp. ASNIH5 species 0 202 175 Aeromonas sp. CU5 species 0 2033033 1 1 2033032 272 0 species Aeromonas sp. CA23 1 1636607 162 0 Aeromonas sp. ASNIH2 species 372 0 Aeromonas sp. ASNIH1 species 1 1636606 1920107 1 148 Aeromonas sp. ASNIH7 species 0 1 652 209 0 Aeromonas schubertii species 558964 1 Aeromonas aquatica species 0 200 1 648 145 0 species Aeromonas caviae Aeromonas media species 0 196 651 1 0 Aeromonas hydrophila species 1352 1 644 0 Oceanimonas genus 343 1 2 129577 2 no rank 0 341 2636315 1 1 511062 341 0 species Oceanimonas sp. GK1 1775403 1 3 5 order Nevskiales 0 217 212 family 0 2689614 2 212 0 Steroidobacter genus 1 1 2 469322 211 Steroidobacter denitrificans species 0 465721 1 1 346 28216 92 0 Betaproteobacteria class 129939 119066 12 no rank 0 2484 1820 Kinetoplastibacterium genus 0 11 33055 1 6 293 0 species Candidatus Kinetoplastibacterium galatii 1 994695 0 species Candidatus Kinetoplastibacterium desouzaii 424 1 994692 277 0 Kinetoplastibacterium blastocrithidii species 1 233181 357 species Candidatus Kinetoplastibacterium oncopeltii 0 994696 1 species Candidatus Kinetoplastibacterium crithidii 0 458 33056 1 18 genus 0 189384 1 189385 1 18 Candidatus Tremblaya princeps species 0 genus 0 72 1301080 1 1 1160784 0 Candidatus Nasuia deltocephalinicola species 72 258 0 genus Candidatus Accumulibacter 3 2 1 327159 255 Candidatus Accumulibacter phosphatis species 0 327160 1 1 2 1 1381133 316 0 Candidatus Profftella genus 1 669502 0 Candidatus Profftella armatura species 315 111929 0 Burkholderiales order 848 1 232 80840 0 no rank 5548 17 224471 392 Leptothrix genus 0 6 88 2 1 34029 1 species Leptothrix cholodnii 0 386 0 genus Thiomonas 409 1 2 32012 5 Thiomonas intermedia species 0 404 926 1 6 1 2 93681 678 0 genus Roseateles 0 species Roseateles depolymerans 672 1 76731 483 genus Rhizobacter 0 4 212743 2 1 0 Rhizobacter gummiphilus species 479 1 946333 genus Methylibium 0 623 316612 1 2 4 1 105560 619 0 species Methylibium petroleiphilum 0 Mitsuaria genus 781 1 2 65047 9 no rank 0 772 2648776 1 0 Mitsuaria sp. 7 species 772 1 1658665 413882 1 876 species [Polyangium] brachysporum 0 547 0 genus Rubrivivax 10 1 2 28067 28068 1 Rubrivivax gelatinosus species 0 537 0 Paucibacter genus 759 2 1 318147 3 1 2642959 756 0 no rank 756 species Paucibacter sp. KCTC 42545 0 1768242 1 119060 84 1 217 family Burkholderiaceae 0 64357 35 93217 1 10 4683 Pandoraea genus 0 656178 1 313 species Pandoraea vervacti 0 Pandoraea pulmonicola species 0 1538 93221 1 0 species Pandoraea thiooxydans 341 1 445709 1 93220 0 Pandoraea pnomenusa species 575 656179 1 319 species Pandoraea faecigallinarum 0 466 Pandoraea oxalativorans species 0 573737 1 Pandoraea norimbergensis species 0 515 93219 1 93218 1 species Pandoraea apista 0 351 1 93222 0 Pandoraea sputorum species 230 591 genus 0 1827195 1 758793 1 Burkholderia sp. RPE64 species 0 591 1 41 32008 979 0 Burkholderia genus 40384 616 0 species Burkholderia plantarii 1 41899 15042 0 species group 7 111527 57975 1 Burkholderia thailandensis species 0 1670 784 Burkholderia sp. MSMB617WGS species 0 1637831 1 0 species Burkholderia sp. MSMB0266 584 1 1637837 1 13373 1483 0 species Burkholderia mallei 7386 Burkholderia pseudomallei species 0 28450 1 2229 species Burkholderia oklahomensis 0 342113 1 species Burkholderia sp. MSMB0852 0 906 1637841 1 4965 0 no rank 11 2613784 1 1678678 0 species Burkholderia sp. HB1 533 0 Burkholderia sp. 2002721687 species 448 1 1468409 1 758796 0 species Burkholderia sp. RPE67 519 640510 1 Burkholderia sp. CCGE1001 species 0 500 1 1740162 435 0 Burkholderia sp. Bp5365 species 513 Burkholderia sp. CCGE1003 species 0 640512 1 0 Burkholderia sp. PAMC 28687 species 294 1 1795874 337 0 Burkholderia sp. Bp7605 species 1 1740163 434 species Burkholderia sp. KJ006 0 416344 1 1097668 1 species Burkholderia sp. YI23 0 690 1 1795043 262 0 species Burkholderia sp. PAMC 26561 species group 0 16525 87882 19 1 488732 360 0 species Burkholderia diffusa 0 Burkholderia latens species 1052 1 488446 0 Burkholderia dolosa species 407 1 152500 405 0 [Pseudomonas] mesoacidophila species 1 265293 0 Burkholderia lata species 1412 1 482957 152480 1 species Burkholderia ambifaria 0 759 0 species Burkholderia pyrrocinia 365 1 60550 1 95486 2268 0 species Burkholderia cenocepacia 1527 0 Burkholderia ubonensis species 1 101571 488729 1 Burkholderia metallica species 0 442 1065 0 species Burkholderia multivorans 1 87883 292 1 species Burkholderia cepacia 0 2511 716 0 Burkholderia stabilis species 1 95485 0 Burkholderia territorii species 337 1 1503055 1 1503054 0 species Burkholderia stagnalis 468 0 species Burkholderia pseudomultivorans 433 1 1207504 488447 1 Burkholderia contaminans species 0 473 495 species Burkholderia seminalis 0 488731 1 0 species Burkholderia vietnamiensis 1030 1 60552 1140 0 Burkholderia glumae species 1 337 0 Burkholderia gladioli species 1117 1 28095 23 48736 1 5 3849 genus Ralstonia 0 2299 0 species Ralstonia solanacearum 1 305 190721 1 species Ralstonia insidiosa 0 379 1 105219 500 0 species Ralstonia mannitolilytica Ralstonia pickettii species 0 648 329 1 6910 genus Paraburkholderia 0 87 1822464 12 1 148447 1 species Paraburkholderia phymatum 0 549 874 Paraburkholderia phytofirmans species 0 261302 1 252970 1 Paraburkholderia phenoliruptrix species 0 501 1 134537 0 species Paraburkholderia fungorum 460 1138 Paraburkholderia caribensis species 0 75105 1 2026199 1 540 species Paraburkholderia aromaticivorans 0 0 no rank 626 1 2615204 1926494 1 species Paraburkholderia sp. SOS3 0 626 474 species Paraburkholderia terrae 0 311230 1 1 948107 0 species Paraburkholderia sprentiae 500 species Paraburkholderia hospita 0 558 169430 1 1 36873 603 0 Paraburkholderia xenovorans species 212 0 genus 1 2571159 1 412963 212 0 species Paraburkholderia rhizoxinica 106589 1 9 87 Cupriavidus genus 0 6906 species Cupriavidus necator 0 728 106590 1 1 119219 1397 0 species Cupriavidus metallidurans 0 Cupriavidus sp. USMAA1020 species 796 1 367825 Cupriavidus gilardii species 0 518 82541 1 395 0 species Cupriavidus pinatubonensis 1 248026 no rank 0 1907 2640874 2 1 876364 0 species Cupriavidus sp. USMAA2-4 987 1 1389192 0 species Cupriavidus sp. USMAHM13 920 68895 1 1078 species Cupriavidus basilensis 0 2 1 4 44013 605 0 genus Polynucleobacter Polynucleobacter duraquae species 0 165 1835254 1 0 species Polynucleobacter asymbioticus 305 1 576611 576610 1 133 species Polynucleobacter necessarius 0 44 1 42 506 13456 0 family Alcaligenaceae 1 305976 0 genus 284 284 no rank 0 2640016 1 0 Pusillimonas sp. T7-7 species 284 1 1007105 291 0 Castellaniella genus 6 2 1 359336 1 75697 285 0 Castellaniella defragrans species 79 1 6 222 4018 0 Achromobacter genus 217204 1 Achromobacter insolitus species 0 399 Achromobacter denitrificans species 0 898 32002 1 378 0 no rank 1 2626865 Achromobacter sp. AONIH1 species 0 378 1758194 1 1 85698 1633 0 species Achromobacter xylosoxidans 631 Achromobacter spanius species 0 217203 1 genus Bordetella 0 5698 517 1 17 94 1331258 1 species Bordetella pseudohinzii 0 274 1 520 394 0 species Bordetella pertussis 1 463040 0 species Bordetella genomosp. 13 389 1 463024 412 0 species Bordetella genomosp. 6 1 519 396 0 species Bordetella parapertussis 1 1416806 0 Bordetella genomosp. 8 species 453 1 463025 361 0 Bordetella bronchialis species 192 species Bordetella avium 0 521 1 518 1 773 Bordetella bronchiseptica species 0 103855 1 species Bordetella hinzii 0 294 270 0 species Bordetella flabilis 1 463014 no rank 0 286 2630031 1 1697043 1 286 Bordetella sp. H567 species 0 1 123899 257 0 Bordetella trematum species 253 species Bordetella genomosp. 9 0 1416803 1 0 Bordetella petrii species 401 1 94624 species Bordetella holmesii 0 199 35814 1 3 2 1 507 1339 0 Alcaligenes genus 1336 Alcaligenes faecalis species 0 511 1 0 genus Basilea 207 1 2 1472344 1 0 Basilea psittacipulmonis species 206 1 1472345 1921582 2 1 6 genus Orrella 0 301 0 Orrella dioscoreae species 295 1 1851544 0 genus Taylorella 515 3 1 29574 2 84590 1 229 species Taylorella asinigenitalis 0 species Taylorella equigenitalis 0 284 29575 1 1 290425 3 1 489 genus Advenella 0 species Advenella mimigardefordensis 0 222 302406 1 species Advenella kashmirensis 0 266 310575 1 109 genus Oligella 0 1 90243 1 2 108 species Oligella urethralis 0 90245 1 1100891 1 161 genus 0 643674 1 species Paenalcaligenes hominis 0 161 316 no rank 0 80841 2 1 1469502 0 species Burkholderiales bacterium GJ-E10 171 1 1834205 145 0 species Burkholderiales bacterium YL45 8211 0 Oxalobacteraceae family 50 1 29 75682 303379 1 3 3 genus Herminiimonas 0 298 1809410 1 species Herminiimonas arsenitoxidans 0 128 204773 1 167 Herminiimonas arsenicoxydans species 0 2085 Massilia genus 0 23 149698 6 1 447 species Massilia sp. ZMN-3 0 2072590 1 2609279 2 no rank 0 825 0 Massilia sp. WG5 species 473 1 1707785 0 species Massilia sp. NR 4-1 352 1 1678028 Massilia sp. B2 species 0 389 2045208 1 1 1141883 0 Massilia putida species 401 1 7 29580 15 0 Janthinobacterium genus 2009 4 2610881 1190 0 no rank 1236179 1 Janthinobacterium sp. B9-8 species 0 212 375286 1 Janthinobacterium sp. Marseille species 0 168 0 species Janthinobacterium sp. 1_2014MBL_MicDiv 450 1 1644131 0 Janthinobacterium sp. LM6 species 360 1 1938606 species Janthinobacterium svalbardensis 0 467 368607 1 55508 1 337 species Janthinobacterium agaricidamnosum 0 1226 genus Collimonas 0 31 202907 4 1 158899 1 Collimonas fungivorans species 0 419 1 279113 356 0 Collimonas pratensis species Collimonas arenae species 0 420 279058 1 Oxalobacter genus 0 87 846 1 2 2 0 species Oxalobacter formigenes 85 1 847 2456 genus Herbaspirillum 0 27 963 1 6 species Herbaspirillum rubrisubalbicans 0 355 80842 1 Herbaspirillum hiltneri species 0 763 341045 1 2624150 1 no rank 0 286 2025949 1 286 Herbaspirillum sp. meg3 species 0 92645 1 Herbaspirillum frisingense species 0 422 1 964 0 species Herbaspirillum seropedicae 603 19193 0 family Comamonadaceae 130 57 1 80864 2 2490452 524 0 genus 245 Comamonadaceae bacterium B1 species 0 1458426 1 Comamonadaceae bacterium A1 species 0 279 1458425 1 223 0 Simplicispira genus 1 2 1 352450 2109915 1 222 Simplicispira sp. SC1-8 species 0 1 201096 381 0 genus 381 Alicycliphilus denitrificans species 0 179636 1 3 1 665874 2 0 Limnohabitans genus 317 2626134 2 no rank 0 315 1678129 1 134 species Limnohabitans sp. 103DPR2 0 1 1678128 181 0 Limnohabitans sp. 63ED37-2 species 0 genus Comamonas 1916 1 4 283 10 285 1 503 Comamonas testosteroni species 0 0 Comamonas serinivorans species 739 1 1082851 225992 1 Comamonas kerstersii species 0 664 255 genus 0 2678886 1 species Melaminivora sp. SC2-7 0 255 2116657 1 0 Variovorax genus 4259 5 1 34072 29 1 34073 2524 0 Variovorax paradoxus species 663243 2 no rank 0 1177 1 2126319 0 Variovorax sp. PMC12 species 588 1 1795631 0 species Variovorax sp. PAMC 28711 589 436515 1 529 Variovorax boronicumulans species 0 1 2 1 174951 728 0 Ramlibacter genus 0 species Ramlibacter tataouinensis 727 1 94132 0 genus Rhodoferax 1145 1 5 28065 2 1 81479 0 species Rhodoferax antarcticus 301 165 species Rhodoferax saidenbachensis 0 1484693 1 1 1842727 393 0 species Rhodoferax koreense 284 Rhodoferax ferrireducens species 0 192843 1 2161 Delftia genus 0 34 80865 5 1 180282 1 485 species Delftia tsuruhatensis 0 1199 0 no rank 2 2613839 0 species Delftia sp. HK171 514 1 1920191 742013 1 Delftia sp. Cs1-4 species 0 685 80866 1 Delftia acidovorans species 0 443 995 0 genus Hydrogenophaga 5 1 4 47420 1 1763535 0 species Hydrogenophaga crassostreae 287 0 no rank 703 2 2610897 1 1842537 0 Hydrogenophaga sp. RAC07 species 330 1 795665 373 0 Hydrogenophaga sp. PBC species 811 0 Verminephrobacter genus 1 2 1 364316 1 364317 810 0 Verminephrobacter eiseniae species 1649468 2 1 5 Melaminivora genus 0 321 2641902 1 316 no rank 0 Melaminivora sp. SC2-9 species 0 316 2109913 1 0 genus Ottowia 518 3 1 219181 3 1 2645081 0 no rank 189 189 species Ottowia sp. oral taxon 894 0 1658672 1 1 2109914 0 species Ottowia sp. KADR8-3 326 259 0 genus 1 1436289 259 species Candidatus Symbiobacter mobilis 0 1436290 1 2 1 3 52972 1474 0 Polaromonas genus 2638319 1 1018 no rank 0 0 Polaromonas sp. JS666 species 1018 1 296591 1 216465 0 Polaromonas naphthalenivorans species 454 genus Diaphorobacter 0 237 238749 1 2 1 Diaphorobacter polyhydroxybutyrativorans species 0 236 1546149 1 12916 1 9 57 genus Acidovorax 0 2539 Acidovorax ebreus species 0 263 721785 1 80867 1 468 species Acidovorax avenae 0 2684926 4 no rank 0 1231 1 1842533 248 0 Acidovorax sp. RAC01 species 1858609 1 491 species Acidovorax sp. T1 0 1 232721 243 0 Acidovorax sp. JS42 species 249 0 Acidovorax sp. KKS102 species 1 358220 80869 1 species Acidovorax citrulli 0 324 553814 1 species Acidovorax sp. NA3 0 196 464 0 no rank 2 33809 0 Betaproteobacteria bacterium GR16-43 species 304 1 1904640 1 543913 160 0 species beta proteobacterium CB 4789 0 Nitrosomonadales order 47 1 42 32003 13 1 32011 12 0 Methylophilaceae family 1548 232 genus Methylovorus 0 7 81682 3 1 116 no rank 0 2634027 1 0 Methylovorus sp. MP688 species 116 1 887061 266009 1 species Methylovorus glucosotrophus 0 109 1 16 0 genus 145 145 no rank 0 2630143 1 145 0 species Methylophilus sp. TWE2 1 1662285 359407 3 1 1 Methylotenera genus 0 465 1055487 1 Methylotenera versatilis species 0 316 0 Methylotenera mobilis species 148 1 359408 538 0 Candidatus Methylopumilus genus 5 1 3 1679002 1581680 1 159 species Candidatus Methylopumilus turicensis 0 1581557 1 374 Candidatus Methylopumilus planktonicus species 0 2 1 404 3 0 genus Methylobacillus 156 1 405 153 0 species Methylobacillus flagellatus 8 1 12 206379 1770 0 Nitrosomonadaceae family Nitrosomonas genus 0 1392 914 7 1 11 0 species Nitrosomonas europaea 124 1 915 44574 1 274 Nitrosomonas communis species 0 2 2609265 539 0 no rank 0 Nitrosomonas sp. AL212 species 325 1 153948 Nitrosomonas sp. Is79A3 species 0 214 261292 1 1 916 0 Nitrosomonas eutropha species 201 243 species Nitrosomonas ureae 0 44577 1 1 4 35798 3 0 Nitrosospira genus 370 0 species Nitrosospira multiformis 113 1 1231 1288494 1 species Nitrosospira lacus 0 147 1 35799 107 0 species Nitrosospira briensis 1 4 90627 11 0 Gallionellaceae family 364 0 genus 183 1 96 370405 1 species Gallionella capsiferriformans 0 183 Sideroxydans genus 0 170 314343 1 2 2 0 species Sideroxydans lithotrophicus 168 1 63745 337 0 family 4 2772226 133 Sulfuriferula genus 0 3 1778653 2 1 no rank 0 130 2637784 1 0 species Sulfuriferula sp. AH1 130 1 1985873 2 935200 1 2 204 Sulfuricella genus 0 202 0 Sulfuricella denitrificans species 1 649841 5 1 2008793 13 0 family Sterolibacteriaceae 472 254 0 genus Sulfuritalea 5 2 1 1054211 0 Sulfuritalea hydrogenivorans species 249 1 748811 205 0 genus Methyloversatilis 1 1 2 378210 0 no rank 204 1 2639971 204 Methyloversatilis sp. RAC08 species 0 1842540 1 3 2008790 3 1 251 Thiobacillaceae family 0 2 1 919 4 0 Thiobacillus genus 248 36861 1 244 Thiobacillus denitrificans species 0 35 1 206351 43 0 Neisseriales order 5945 481 21 1 23 family Neisseriaceae 0 3255 268 0 genus Snodgrassella 2 1 2 1193515 Snodgrassella alvi species 0 266 1196083 1 180 0 genus 1 538 0 species Eikenella corrodens 180 1 539 252 no rank 0 421605 1 0 species Neisseriaceae bacterium DSM 100970 252 1 2052837 1967 0 genus Neisseria 27 1 12 482 1 488 0 Neisseria mucosa species 98 235 0 Neisseria gonorrhoeae species 1 485 1 326523 0 species Neisseria zoodegmatis 129 1 486 0 Neisseria lactamica species 176 species Neisseria elongata 0 104 495 1 2 2623750 0 no rank 238 145 0 species Neisseria sp. KEM232 1 655307 1853276 1 Neisseria sp. 10022 species 0 93 1853278 1 123 species Neisseria sp. 10023 0 1 28091 123 0 species Neisseria weaveri 0 species Neisseria sicca 87 1 490 species Neisseria meningitidis 0 627 487 1 3 1 59 6 0 Vitreoscilla genus 435 235 no rank 0 2627922 1 235 0 Vitreoscilla sp. C1 species 1 96942 species Vitreoscilla filiformis 0 194 63 1 71 1 130 genus 0 0 species Simonsiella muelleri 130 1 72 Chromobacteriaceae family 0 2647 1499392 13 1 40 7 885864 1 2 296 Jeongeupia genus 0 2619593 1 no rank 0 289 1906741 1 289 species Jeongeupia sp. USM3 0 168470 2 1 9 Laribacter genus 0 256 species Laribacter hongkongensis 0 247 168471 1 no rank 0 1493 90153 4 genus Chromobacterium 0 1493 535 1 4 20 659 0 Chromobacterium vaccinii species 1 1108595 no rank 0 380 2641838 1 0 Chromobacterium sp. ATCC 53434 species 380 1 2059672 Chromobacterium violaceum species 0 434 536 1 285 0 Pseudogulbenkiania genus 6 1 2 568394 279 no rank 0 2642558 1 1 748280 279 0 Pseudogulbenkiania sp. NH8B species 1 2 187 3 0 genus Aquaspirillum 277 1 2620219 274 0 no rank 1938604 1 274 Aquaspirillum sp. LM1 species 0 4236 0 order Rhodocyclales 37 1 22 206389 2008794 12 1 24 Zoogloeaceae family 0 3090 genus Azoarcus 0 1476 12960 5 1 24 418699 1 336 species Azoarcus olearius 0 314 Azoarcus sp. SY39 species 0 2067960 1 2 2629479 0 no rank 802 198107 1 450 species Azoarcus sp. CIB 0 species Azoarcus sp. KH32C 0 352 748247 1 33057 6 1 27 genus Thauera 0 1590 0 species Thauera chlorobenzoica 318 1 96773 2609274 2 no rank 0 736 1 85643 401 0 Thauera sp. MZ1T species 335 0 species Thauera sp. K11 1 2005884 251 Thauera humireducens species 0 1134435 1 59405 1 Thauera aromatica species 0 258 1 6 75787 10 0 family Rhodocyclaceae 851 1 75788 0 no rank 177 1898103 1 177 Rhodocyclaceae bacterium species 0 551759 1 2 3 genus Aromatoleum 0 392 389 0 Aromatoleum aromaticum species 1 551760 7 2 1 146937 272 0 Azospira genus 146939 1 265 Azospira oryzae species 0 1 3 2008795 5 0 family Azonexaceae 258 0 genus Dechloromonas 253 1 2 73029 4 259537 1 249 species Dechloromonas aromatica 0 4 1930617 259 0 phylum 259 class 0 1962850 4 0 order Calditrichales 259 4 1 1962852 1 3 1 1962854 1 0 Calditrichaceae family 258 genus Caldithrix 0 257 187144 2 1 2 1 187145 255 0 Caldithrix abyssi species superkingdom 0 30243 2157 279 1783275 54 clade 0 4770 1924 0 phylum 40 28889 1924 0 class Thermoprotei 1 1 40 183924 Thermoproteales order 0 335 2266 1 12 3 206 family 0 2267 6 164450 2 71 genus 0 41 0 species Vulcanisaeta moutnovskia 1 985052 164451 1 30 Vulcanisaeta distributa species 0 76886 1 31 genus 0 0 species Caldivirga maquilingensis 31 1 76887 genus 0 25 2276 1 25 0 Pyrobaculum islandicum species 1 2277 2 2270 79 0 genus Thermoproteus uzoniensis species 0 48 184117 1 2271 1 31 species Thermoproteus tenax 0 5 114378 0 family 126 126 0 Thermofilum genus 2 1 5 2268 1 1550241 26 0 species Thermofilum uzonense 1 1483572 33 0 Thermofilum carboxyditrophus species 2269 1 29 species Thermofilum pendens 0 Thermofilum adornatus species 0 36 1365176 1 2 871006 0 order 184 0 family 29 1 871007 29 0 genus 1 105850 1 242703 29 0 Acidilobus saccharovorans species 255472 1 family 0 155 1 200414 155 0 genus 155 species Caldisphaera lagunensis 0 200415 1 14 114380 456 0 order 2272 10 294 family 0 3 1 2279 1 0 genus Staphylothermus 149 0 Staphylothermus marinus species 105 1 2280 43 0 species Staphylothermus hellenicus 1 84599 1 2 477695 1 0 genus Thermogladius 29 0 Thermogladius calderae species 28 1 1200300 1 54253 0 genus 13 54254 1 Thermosphaera aggregans species 0 13 0 genus 50 2 54258 27 Ignicoccus hospitalis species 0 160233 1 1 54259 23 0 Ignicoccus islandicus species 53 0 genus 2 2273 15 species Desulfurococcus mucosus 0 2275 1 38 0 species Desulfurococcus amylolyticus 1 94694 4 1 2307 1 0 family Pyrodictiaceae 162 2308 1 32 genus 0 1273541 1 32 species Pyrodictium delaneyi 0 54247 1 genus 0 83 54248 1 species Hyperthermus butylicus 0 83 1 54251 46 0 genus 1 54252 0 species Pyrolobus fumarii 46 948 order Sulfolobales 0 1 2281 11 1 947 0 family Sulfolobaceae 1 1 10 118883 1 12914 101 0 genus 563177 1 101 species Acidianus hospitalis 0 genus 0 112 41980 2 44 0 species Metallosphaera sedula 1 43687 1 1006005 68 0 Metallosphaera cuprina species 1 2100760 151 0 genus 151 species Sulfolobus solfataricus 0 2287 1 180 0 genus 1 69655 1 111955 0 Sulfolobus tokodaii species 180 13 4 1 2284 402 0 Sulfolobus genus 1 2285 0 species Sulfolobus acidocaldarius 82 1 43080 204 0 Sulfolobus islandicus species no rank 0 103 2641160 1 0 Sulfolobus sp. A20 species 103 1 1891280 2 651137 1 13 2789 phylum Thaumarchaeota 0 5 31932 529 0 order 1 338190 1 5 529 family Nitrosopumilaceae 0 1 338191 1 3 328 Nitrosopumilus genus 0 0 species Candidatus Nitrosopumilus sediminis 148 1 1229909 1 1580092 0 Candidatus Nitrosopumilus adriaticus species 179 0 genus 200 1 1993653 200 Candidatus Nitrosomarinus catalina species 0 1898749 1 5 651142 0 no rank 881 1 2 1593364 1 0 genus Candidatus Nitrosopelagicus 798 1410606 1 species Candidatus Nitrosopelagicus brevis 0 797 0 Candidatus Nitrosotenuis genus 83 3 1 1825023 1 1603555 1 36 species Candidatus Nitrosotenuis cloacae 0 0 Candidatus Nitrosotenuis sp. AQ6f species 46 1 1846278 2 1643678 1377 0 class 1968909 1 order 0 839 1968910 1 839 family 0 0 genus 839 1 498374 839 0 species Candidatus Nitrosocaldus islandicus 1 2045011 1033996 1 order 0 538 1 1033997 538 0 family 538 genus 0 497726 1 1 1034015 538 0 species Nitrososphaera viennensis phylum 0 57 51967 1 498845 1 57 genus 0 0 Candidatus Korarchaeum cryptofilum species 57 1 498846 1 1783276 19 0 clade 19 phylum 0 1801631 1 19 genus 0 2490204 1 1 1920749 19 0 Candidatus Micrarchaeota archaeon Mia14 species 28890 224 25454 phylum 0 2283794 42 clade 0 4814 2499 0 class Methanococci 1 1 17 183939 2 2182 16 1 2498 Methanococcales order 0 1554 0 family Methanococcaceae 2 7 1 2183 1 155862 144 0 genus 0 Methanothermococcus okinawensis species 144 1 155863 5 1 2184 1 0 genus Methanococcus 1408 681 0 species Methanococcus maripaludis 1 39152 2187 1 160 species Methanococcus vannielii 0 42879 1 176 species Methanococcus aeolicus 0 390 0 Methanococcus voltae species 1 2188 8 196117 942 0 family 1 196119 112 0 genus 1 2189 0 Methanotorris igneus species 112 1 7 196118 3 0 genus Methanocaldococcus 830 1301915 1 Methanocaldococcus bathoardescens species 0 157 147 species Methanocaldococcus vulcanius 0 73913 1 2641196 1 no rank 0 158 1 644281 158 0 Methanocaldococcus sp. FS406-22 species 98 0 species Methanocaldococcus infernus 1 67760 1 2190 0 species Methanocaldococcus jannaschii 164 103 species Methanocaldococcus fervens 0 83171 1 0 Methanobacteria class 2315 1 25 183925 1 2314 0 order Methanobacteriales 4 1 24 2158 family 0 161 2178 1 161 genus 0 2179 1 1 2180 0 Methanothermus fervidus species 161 1 22 2159 1 0 family Methanobacteriaceae 2149 686 genus Methanobacterium 0 8 2160 1 8 59277 1 species Methanobacterium subterraneum 0 65 0 no rank 122 2 2627676 1 1379702 53 0 Methanobacterium sp. MB1 species 69 0 species Methanobacterium sp. MZ-A1 1 1911685 Methanobacterium lacus species 0 195 877455 1 1 118062 87 0 species Methanobacterium congolense 0 species Methanobacterium formicicum 95 1 2162 868131 1 Methanobacterium paludis species 0 114 Methanobrevibacter genus 0 1085 2172 7 1 4 1 83816 0 species Methanobrevibacter ruminantium 146 204 Methanobrevibacter millerae species 0 230361 1 1 2173 213 0 Methanobrevibacter smithii species 294671 1 231 species Methanobrevibacter olleyae 0 2638681 2 287 no rank 0 1609968 1 121 species Methanobrevibacter sp. YE315 0 1 224719 166 0 Methanobrevibacter sp. AbM4 species 2 145260 1 5 155 genus Methanothermobacter 0 no rank 0 30 2631116 1 866790 1 30 species Methanothermobacter sp. CaT2 0 1 145262 31 0 Methanothermobacter thermautotrophicus species 33 species Methanothermobacter wolfeii 0 145261 1 species Methanothermobacter marburgensis 0 59 145263 1 0 genus 222 1 2316 Methanosphaera stadtmanae species 0 222 2317 1 312 0 class 8 183980 order Archaeoglobales 0 312 2231 8 1 1 311 family 0 2232 7 0 genus 194 4 2233 2234 1 50 species Archaeoglobus fulgidus 0 63 species Archaeoglobus sulfaticallidus 0 1316941 1 28 0 Archaeoglobus profundus species 1 84156 53 0 species Archaeoglobus veneficus 1 58290 2 190818 0 genus 60 24 0 Geoglobus acetivorans species 1 565033 36 species Geoglobus ahangari 0 113653 1 54260 1 57 genus 0 1 54261 57 0 species Ferroglobus placidus 2 1 41 183968 1718 0 Thermococci class 2258 1 40 1 Thermococcales order 0 1716 1 39 2259 2 0 family Thermococcaceae 1715 0 genus 45 1 83867 1 971279 45 0 Palaeococcus pacificus species 257 Pyrococcus genus 0 3 2260 1 8 1 1008460 20 0 Pyrococcus yayanosii species 1 29292 34 0 Pyrococcus abyssi species 34 0 species Pyrococcus kukulkanii 1 1609559 45 0 Pyrococcus furiosus species 1 2261 86 0 no rank 2 2629106 52 species Pyrococcus sp. ST04 0 1183377 1 1 342949 0 species Pyrococcus sp. NA2 34 53953 1 species Pyrococcus horikoshii 0 35 2263 1 29 6 genus Thermococcus 0 1411 1 277988 31 0 Thermococcus thioreducens species 1 71997 17 0 species Thermococcus gorgonarius 1 2265 0 Thermococcus litoralis species 43 0 species Thermococcus peptonophilus 17 1 53952 Thermococcus chitonophagus species 0 44 54262 1 187880 1 38 species Thermococcus radiotolerans 0 45 Thermococcus nautili species 0 195522 1 27 species Thermococcus kodakarensis 0 311400 1 species Thermococcus siculi 0 482 72803 1 1505907 1 Thermococcus eurythermalis species 0 25 187878 1 Thermococcus gammatolerans species 0 46 342948 1 32 Thermococcus onnurineus species 0 65 species Thermococcus barophilus 0 55802 1 54 0 species Thermococcus paralvinellae 1 582419 0 Thermococcus celer species 29 1 2264 21 0 Thermococcus pacificus species 1 71998 1 172049 0 species Thermococcus sibiricus 67 23 Thermococcus profundus species 0 49899 1 163003 1 species Thermococcus cleftensis 0 43 Thermococcus piezophilus species 0 24 1712654 1 6 2627626 179 0 no rank 1674923 1 36 Thermococcus sp. 2319x1 species 0 1 2016361 0 species Thermococcus sp. EXT12c 35 22 0 Thermococcus sp. 5-4 species 1 2008440 1042877 1 species Thermococcus sp. 4557 0 42 30 0 Thermococcus sp. AM4 species 1 246969 Thermococcus sp. P6 species 0 14 122420 1 54077 1 Thermococcus barossii species 0 21 32 species Thermococcus guaymasensis 0 110164 1 2283796 20 clade 0 982 1803510 3 clade 0 139 1 3 1 379546 139 0 genus Aciduliprofundum 1 2633939 68 0 no rank 0 species Aciduliprofundum sp. MAR08-339 68 1 673860 1 379547 70 0 Aciduliprofundum boonei species 183967 1 17 2 class Thermoplasmata 0 843 no rank 0 42 1234666 1 methanogenic archaeon ISO4-H5 species 0 42 1495144 1 order 0 554 2301 10 Cuniculiplasmataceae family 0 199 1747776 1 3 6 1747777 2 1 12 Cuniculiplasma genus 0 193 1 1673428 181 0 species Cuniculiplasma divulgatum 2 46659 0 family 68 genus 0 68 2302 2 2303 1 26 Thermoplasma acidophilum species 0 1 50339 0 Thermoplasma volcanium species 42 163 0 family 3 90142 163 0 Ferroplasma genus 1 1 3 74968 80 0 Ferroplasma acidiphilum species 1 74969 1 97393 82 0 species Ferroplasma acidarmanus 51 0 no rank 1 1919231 51 species Thermoplasmatales archaeon BRNA1 0 1054217 1 46630 1 family 0 73 0 genus 73 1 46631 82076 1 73 species Picrophilus torridus 0 5 1235850 245 0 order 212 Methanomassiliicoccaceae family 0 1 1577788 1 4 32 Candidatus Methanoplasma genus 0 1 1607807 2 1 31 0 species Candidatus Methanoplasma termitum 1 1577791 179 0 genus 1 1080709 1406512 1 179 species Candidatus Methanomassiliicoccus intestinalis 0 1 2517203 33 0 family 1291539 1 genus 0 33 33 0 species Candidatus Methanomethylophilus alvus 1 1291540 17628 0 clade 113 2290931 13106 0 class Halobacteria 40 1 66 183963 1644060 1 20 56 Natrialbales order 0 5907 5851 0 Natrialbaceae family 19 19 1 1644061 342 0 genus 1 387342 1 387343 0 species Halopiger xanaduensis 342 0 genus Natronococcus 227 1 2 29287 1 Natronococcus occultus species 0 226 29288 1 2 2 1 2256 200 0 Natronobacterium genus 1 44930 0 Natronobacterium gregoryi species 198 203193 1 630 genus 0 229731 1 630 Halobiforma lacisalsi species 0 1 2 1 353799 137 0 Halostagnicola genus 353800 1 species Halostagnicola larsenii 0 136 1 2 1 1269201 154 0 genus Salinarchaeum 2621923 1 153 no rank 0 species Salinarchaeum sp. Harcht-Bsk1 0 153 1333523 1 668 0 genus Haloterrigena 2 3 1 121871 62320 1 Haloterrigena turkmenica species 0 278 388 species Haloterrigena daqingensis 0 588898 1 88723 3 1 3 Natrinema genus 0 392 242 species Natrinema pellirubrum 0 69525 1 no rank 0 147 2622230 1 1 406552 147 0 species Natrinema sp. J7-2 3082 genus Natrialba 0 7 63742 1 2 3075 Natrialba magadii species 0 13769 1 0 Haloferacales order 4902 1 18 1644055 42 no rank 0 202 2678336 1 756883 1 202 species halophilic archaeon DL31 0 family Halorubraceae 0 1155 1963271 1 8 4 1 2 1644057 5 0 genus Salinigranum 421 416 0 Salinigranum rubrum species 1 755307 2 1 1209988 2 0 Halopenitus genus 220 1048396 1 species Halopenitus persicus 0 218 2 1 3 56688 510 0 Halorubrum genus 1 29284 305 0 Halorubrum trapanicum species species Halorubrum lacusprofundi 0 203 2247 1 0 Haloferacaceae family 3503 1 8 1644056 9 9 1 2 293431 2315 0 genus Haloquadratum 1 293091 2306 0 species Haloquadratum walsbyi 1 60846 155 0 genus 1 60847 0 species Halogeometricum borinquense 155 0 genus Haloferax 1024 4 1 2251 9 35746 1 species Haloferax gibbonsii 0 475 2252 1 species Haloferax mediterranei 0 141 1 2246 399 0 species Haloferax volcanii Halobacteriales order 0 2257 2235 27 1 14 7 1963268 15 1 1375 family Haloarculaceae 0 173 0 genus 1 1073987 no rank 0 173 2648975 1 species Halorientalis sp. IM1011 0 173 1932360 1 4 1 3 146825 226 0 genus Halorhabdus 146826 1 species Halorhabdus utahensis 0 92 130 species Halorhabdus tiamatea 0 430914 1 175 Halomicrobium genus 0 2 203135 2 1 173 0 species Halomicrobium mukohataei 1 57705 506 0 genus Haloarcula 12 5 1 2237 Haloarcula marismortui species 0 126 2238 1 2624677 1 128 no rank 0 0 Haloarcula sp. CBA1115 species 128 1 1592728 1 1932004 0 Haloarcula taiwanensis species 124 0 Haloarcula hispanica species 116 1 51589 0 genus Natronomonas 288 3 1 63743 3 1 2257 127 0 Natronomonas pharaonis species 416273 1 158 species Natronomonas moolapensis 0 0 family Halobacteriaceae 868 11 1 2236 3 0 genus Halodesulfurarchaeum 70 1 2 1980514 6 64 Halodesulfurarchaeum formicicum species 0 1873524 1 134 Halalkalicoccus genus 0 1 332246 2 1 species Halalkalicoccus jeotgali 0 133 413810 1 3 1656823 2 1 90 Halanaeroarchaeum genus 0 1 1604004 0 species Halanaeroarchaeum sulfurireducens 87 7 2239 1 4 571 genus Halobacterium 0 169 0 species Halobacterium salinarum 1 2242 no rank 0 172 2668073 1 1 751944 172 0 Halobacterium sp. DL1 species 1 1407499 0 Halobacterium hubeiense species 223 4522 class Methanomicrobia 0 2 224756 1 47 187 order 0 570264 3 3 570265 0 family 187 187 Methanocella genus 0 2 570266 3 1 49 Methanocella conradii species 0 1175444 1 Methanocella arvoryzae species 0 136 1175445 1 3695 0 order Methanosarcinales 22 1 28 94695 12 2206 1 24 3449 family Methanosarcinaceae 0 1 2321 0 genus 213 1 2322 213 0 species Methanohalobium evestigatum 2220 1 genus 0 53 53 species Methanolobus psychrophilus 0 420950 1 196136 1 genus 0 91 91 0 Methanosalsum zhilinae species 1 39669 160 genus 0 2225 2 1 2226 92 0 Methanococcoides methylutens species 0 species Methanococcoides burtonii 68 1 29291 1 1 3 2175 157 0 genus Methanohalophilus 1 2177 69 0 Methanohalophilus halophilus species 0 Methanohalophilus mahii species 87 1 2176 74 genus Methanomethylovorans 0 6 101191 1 2 68 species Methanomethylovorans hollandica 0 101192 1 2 1 13 2207 2689 0 genus Methanosarcina 618 0 Methanosarcina barkeri species 1 2208 2209 1 276 species Methanosarcina mazei 0 1 170861 0 species Methanosarcina lacustris 194 2214 1 species Methanosarcina acetivorans 0 138 2210 1 Methanosarcina thermophila species 0 112 1 2215 190 0 species Methanosarcina vacuolata 2644672 4 no rank 0 706 1 1434099 0 Methanosarcina sp. Kolksee species 192 118 Methanosarcina sp. WH1 species 0 1434102 1 1434100 1 271 species Methanosarcina sp. MTP4 0 1434103 1 species Methanosarcina sp. WWM596 0 125 1 38027 0 Methanosarcina siciliae species 325 128 0 species Methanosarcina horonobensis 1 418008 family 0 224 143067 3 Methanothrix genus 0 224 2222 1 3 3 species Methanothrix soehngenii 0 98 2223 1 123 Methanosaeta harundinacea species 0 301375 1 638 0 Methanomicrobiales order 11 1 15 2191 0 family 44 2 88404 2 1 2192 6 0 genus Methanocorpusculum 44 1 83984 38 0 species Methanocorpusculum labreanum family Methanoregulaceae 0 199 1198451 4 1 7 475087 1 70 genus 0 70 0 Methanosphaerula palustris species 1 475088 genus 0 122 395331 2 882104 1 45 Methanoregula formicica species 0 1 358766 0 Methanoregula boonei species 77 340 0 Methanomicrobiaceae family 7 1 6 2194 1 230355 0 genus 51 0 species Methanolacinia petrolearia 51 1 54120 0 Methanoculleus genus 282 1 4 45989 1 2619537 1 76 no rank 0 1 86622 76 0 Methanoculleus sp. MAB1 species 83986 1 species Methanoculleus bourgensis 0 115 2198 1 90 species Methanoculleus marisnigri 0 196137 2 44 family 0 44 0 Methanospirillum genus 6 2 1 2202 2203 1 38 species Methanospirillum hungatei 0