members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 31 4745 50681 42922575 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 276 0 2157 75499 superkingdom clade 6217 1783275 0 46 phylum 63 51967 0 1 genus 63 498845 0 1 1 0 498846 63 Candidatus Korarchaeum cryptofilum species 0 36 4333 28889 phylum 4333 183924 class 0 36 order 513 871006 0 3 2 0 family 871007 127 genus 105850 127 Acidilobus 1 2 1 0 242703 126 Acidilobus saccharovorans species 1 0 family 255472 386 1 0 genus 386 200414 0 1 1 0 200415 Caldisphaera lagunensis 386 species 12 0 114380 857 order 0 3 family 239 2307 1 0 2308 137 genus 1 0 species 1273541 Pyrodictium delaneyi 137 1 0 54251 59 genus 1 0 54252 Pyrolobus fumarii 59 species genus 54247 43 1 0 0 1 species Hyperthermus butylicus 43 54248 family 2272 Desulfurococcaceae 618 1 2 9 0 genus 54258 50 2 0 1 0 54259 Ignicoccus islandicus 22 species 160233 28 Ignicoccus hospitalis species 1 0 2 0 genus 2273 122 1 0 species 2275 Desulfurococcus mucosus 57 1 0 species 94694 65 Desulfurococcus amylolyticus 0 1 134 54253 genus species 54254 Thermosphaera aggregans 134 1 0 genus 63 477695 0 1 1 0 species 1200300 63 Thermogladius calderae genus 2279 247 2 0 0 1 Staphylothermus hellenicus 137 84599 species 2280 110 Staphylothermus marinus species 1 0 2 12 0 1 2266 Thermoproteales 1130 order 0 4 615 114378 family 0 4 615 2268 genus 1483572 233 Thermofilum carboxyditrophus species 1 0 0 1 species Thermofilum adornatus 273 1365176 species 1550241 Thermofilum uzonense 55 1 0 1 0 2269 54 Thermofilum pendens species 7 0 family 2267 513 Thermoproteus 191 2270 genus 0 1 3 1 Thermoproteus uzoniensis 120 184117 species 0 1 Thermoproteus tenax 70 2271 species 0 1 2 0 genus 164450 193 1 0 985052 71 Vulcanisaeta moutnovskia species 0 1 122 Vulcanisaeta distributa 164451 species 63 76886 genus 0 1 1 0 species 76887 Caldivirga maquilingensis 63 genus 66 2276 0 1 1 0 species 2277 Pyrobaculum islandicum 66 0 9 order 1833 2281 118883 1833 family 9 0 genus 69655 387 1 0 111955 387 Sulfolobus tokodaii species 1 0 genus 2100760 225 1 0 Sulfolobus solfataricus 225 2287 species 0 1 genus Sulfolobus 697 2284 1 0 1 4 0 1 no rank 92 2641160 species Sulfolobus sp. A20 92 1891280 0 1 43080 511 Sulfolobus islandicus species 1 0 species 2285 93 Sulfolobus acidocaldarius 1 0 0 2 201 41980 genus Metallosphaera cuprina 126 1006005 species 0 1 Metallosphaera sedula 75 43687 species 0 1 0 1 genus 323 12914 species 323 Acidianus hospitalis 563177 0 1 9 0 phylum 651137 1821 order 762 31932 0 3 762 338190 family 0 3 0 1 genus 189 1993653 species 189 Candidatus Nitrosomarinus catalina 1898749 0 1 573 338191 genus 0 2 0 1 Candidatus Nitrosopumilus adriaticus 231 1580092 species species 342 Candidatus Nitrosopumilus sediminis 1229909 0 1 493 651142 no rank 0 3 1 0 genus 1593364 173 1 0 species 1410606 173 Candidatus Nitrosopelagicus brevis 0 2 320 1825023 genus 0 1 species 139 Candidatus Nitrosotenuis cloacae 1603555 1 0 1846278 Candidatus Nitrosotenuis sp. AQ6f 181 species 1643678 566 class 3 0 1 0 order 1968909 37 family 1968910 37 1 0 37 498374 genus 0 1 species 2045011 37 Candidatus Nitrosocaldus islandicus 1 0 2 0 order 1033996 529 1033997 529 family 2 0 529 Nitrososphaera 497726 genus 0 2 2 1 0 1 species 527 Nitrososphaera viennensis 1034015 0 1 clade 77 1783276 0 1 phylum 77 1801631 1 0 2490204 77 genus species Candidatus Micrarchaeota archaeon Mia14 77 1920749 0 1 0 229 15 1 69205 Euryarchaeota 28890 phylum class 183980 1631 11 0 1 0 11 2 order 1631 Archaeoglobales 2231 0 7 10 1 Archaeoglobaceae 1629 2232 family 0 1 genus 182 54260 54261 Ferroglobus placidus 182 species 1 0 genus 997 Archaeoglobus 2233 1 0 5 16 species 2234 330 Archaeoglobus fulgidus 1 0 213 Archaeoglobus sulfaticallidus 1316941 species 0 1 84156 Archaeoglobus profundus 120 species 1 0 0 1 Archaeoglobus veneficus 318 58290 species genus 443 Geoglobus 190818 1 0 3 1 113653 Geoglobus ahangari 221 species 1 0 0 1 species 221 Geoglobus acetivorans 565033 44 0 2283794 14118 clade 1 0 25 4 class 7880 Methanobacteria 183925 1 24 1 0 order 2158 7876 Methanobacteriales 1 0 2178 187 family 0 1 187 2179 genus 1 0 2180 187 Methanothermus fervidus species 1 7 22 0 family 2159 Methanobacteriaceae 7688 1 0 1 8 genus Methanobacterium 2520 2160 1 0 species 2162 Methanobacterium formicicum 374 59277 350 Methanobacterium subterraneum species 1 0 no rank 2627676 720 2 0 1 0 species 1379702 323 Methanobacterium sp. MB1 1 0 species 1911685 Methanobacterium sp. MZ-A1 397 0 1 Methanobacterium paludis 404 868131 species 0 1 species 293 Methanobacterium congolense 118062 species 378 Methanobacterium lacus 877455 0 1 2172 Methanobrevibacter 4122 genus 4 7 0 1 0 1 Methanobrevibacter ruminantium 559 83816 species 809 Methanobrevibacter olleyae 294671 species 0 1 2638681 1172 no rank 2 0 Methanobrevibacter sp. AbM4 617 224719 species 0 1 0 1 555 Methanobrevibacter sp. YE315 1609968 species species 2173 760 Methanobrevibacter smithii 1 0 species 818 Methanobrevibacter millerae 230361 0 1 2316 631 genus 1 0 1 0 species 2317 631 Methanosphaera stadtmanae genus 408 Methanothermobacter 145260 1 0 5 2 108 2631116 no rank 0 1 0 1 108 Methanothermobacter sp. CaT2 866790 species 145262 Methanothermobacter thermautotrophicus 113 species 1 0 species 145263 104 Methanothermobacter marburgensis 1 0 145261 81 Methanothermobacter wolfeii species 1 0 1 0 2 19 class Methanococci 6238 183939 Methanococcales 6236 2182 order 0 1 18 1 family 196117 Methanocaldococcaceae 2936 1 2 10 0 535 Methanotorris 196119 genus 0 2 6 1 species Methanotorris igneus 529 2189 0 1 genus Methanocaldococcus 2399 196118 1 0 1 7 387 2641196 no rank 0 1 species 644281 387 Methanocaldococcus sp. FS406-22 1 0 0 1 species 473 Methanocaldococcus fervens 83171 1 0 1301915 Methanocaldococcus bathoardescens 434 species species 67760 231 Methanocaldococcus infernus 1 0 0 1 Methanocaldococcus vulcanius 414 73913 species 0 1 459 Methanocaldococcus jannaschii 2190 species 2183 3299 Methanococcaceae family 7 3 0 1 0 1 409 155862 genus 0 1 409 Methanothermococcus okinawensis 155863 species genus 2184 2887 Methanococcus 1 5 1 0 0 1 323 Methanococcus aeolicus 42879 species species Methanococcus maripaludis 1848 39152 0 1 1 0 species 2188 262 Methanococcus voltae species 2187 453 Methanococcus vannielii 1 0 1 0 40 10 class 7269 Thermococci 183968 0 39 27 1 7259 Thermococcales 2258 order family 7232 Thermococcaceae 2259 1 0 38 26 0 7 genus 1056 2260 0 2 396 2629106 no rank species Pyrococcus sp. ST04 306 1183377 0 1 1 0 342949 90 Pyrococcus sp. NA2 species 0 1 Pyrococcus kukulkanii 123 1609559 species 1 0 species 53953 Pyrococcus horikoshii 104 0 1 Pyrococcus furiosus 201 2261 species species 29292 Pyrococcus abyssi 118 1 0 114 Pyrococcus yayanosii 1008460 species 0 1 83867 131 genus 1 0 0 1 species Palaeococcus pacificus 131 971279 genus 2263 6019 Thermococcus 1 29 97 0 0 1 species Thermococcus onnurineus 58 342948 0 1 species Thermococcus siculi 219 72803 54077 225 Thermococcus barossii species 1 0 Thermococcus pacificus 192 71998 species 0 1 1 0 582419 175 Thermococcus paralvinellae species 1 0 species 71997 Thermococcus gorgonarius 271 1 0 195522 253 Thermococcus nautili species species 1505907 169 Thermococcus eurythermalis 1 0 6 0 2627626 1256 no rank species 270 Thermococcus sp. EXT12c 2016361 0 1 0 1 Thermococcus sp. 5-4 204 2008440 species species 1674923 Thermococcus sp. 2319x1 114 1 0 0 1 Thermococcus sp. 4557 233 1042877 species 1 0 species 122420 Thermococcus sp. P6 102 246969 Thermococcus sp. AM4 333 species 1 0 species 253 Thermococcus guaymasensis 110164 0 1 0 1 Thermococcus chitonophagus 220 54262 species 1 0 55802 228 Thermococcus barophilus species 1 0 species 187878 153 Thermococcus gammatolerans 0 1 228 Thermococcus celer 2264 species species 176 Thermococcus kodakarensis 311400 0 1 163003 187 Thermococcus cleftensis species 1 0 species 187880 268 Thermococcus radiotolerans 1 0 1 0 2265 265 Thermococcus litoralis species Thermococcus piezophilus 136 1712654 species 0 1 species 53952 Thermococcus peptonophilus 294 1 0 species 277988 320 Thermococcus thioreducens 1 0 0 1 species Thermococcus sibiricus 217 172049 1 0 species 49899 Thermococcus profundus 159 0 115 clade 41196 2290931 class 183963 Halobacteria 21305 1 126 66 0 order 6908 Natrialbales 1644060 1 0 19 73 family Natrialbaceae 6835 1644061 1 0 103 18 29287 637 Natronococcus genus 2 40 0 1 0 1 species 597 Natronococcus occultus 29288 0 2 9 1 440 Salinarchaeum 1269201 genus 1 0 no rank 2621923 431 species 1333523 Salinarchaeum sp. Harcht-Bsk1 431 1 0 genus 977 63742 0 1 0 1 977 Natrialba magadii 13769 species 121871 1133 Haloterrigena genus 3 6 0 1 species 588898 Haloterrigena daqingensis 357 1 0 0 1 species Haloterrigena turkmenica 770 62320 genus 731 203193 0 1 1 0 species 229731 731 Halobiforma lacisalsi genus 88723 Natrinema 1084 1 8 3 0 69525 Natrinema pellirubrum 574 species 1 0 no rank 2622230 502 1 0 Natrinema sp. J7-2 502 406552 species 0 1 genus Halopiger 891 387342 1 0 2 2 889 Halopiger xanaduensis 387343 species 0 1 0 1 genus 331 2256 species 44930 331 Natronobacterium gregoryi 1 0 genus 353799 508 Halostagnicola 1 2 4 0 353800 Halostagnicola larsenii 504 species 1 0 1 176 28 0 order 2235 Halobacteriales 8612 1 0 16 98 family 5671 Haloarculaceae 1963268 18 2 0 1 203135 Halomicrobium 710 genus 0 1 species 692 Halomicrobium mukohataei 57705 1 3 10 0 genus 63743 683 Natronomonas species 2257 345 Natronomonas pharaonis 1 0 species 328 Natronomonas moolapensis 416273 0 1 49 5 0 1 2237 Haloarcula 2150 genus 617 Haloarcula hispanica 51589 species 0 1 Haloarcula taiwanensis 391 1932004 species 0 1 1 0 2624677 520 no rank 1 0 species 1592728 520 Haloarcula sp. CBA1115 573 Haloarcula marismortui 2238 species 0 1 2 57 0 1 1073987 881 Halorientalis genus 1 0 2648975 824 no rank 1 0 1932360 824 Halorientalis sp. IM1011 species 146825 1149 Halorhabdus genus 3 9 0 1 Halorhabdus utahensis 795 146826 species 0 1 species 430914 345 Halorhabdus tiamatea 1 0 1 0 23 11 family Halobacteriaceae 2765 2236 0 3 2 1 Halodesulfurarchaeum 306 1980514 genus Halodesulfurarchaeum formicicum 303 1873524 species 0 1 genus 2239 Halobacterium 1624 1 26 4 0 1 0 no rank 2668073 519 species 519 Halobacterium sp. DL1 751944 0 1 species 2242 Halobacterium salinarum 441 1 0 species Halobacterium hubeiense 638 1407499 0 1 332246 551 Halalkalicoccus genus 2 13 0 1 0 1 538 Halalkalicoccus jeotgali 413810 species 1 2 2 0 genus 1656823 261 Halanaeroarchaeum species 259 Halanaeroarchaeum sulfurireducens 1604004 0 1 1644055 Haloferacales 5659 order 70 18 0 1 family 1963271 Halorubraceae 2247 1 8 8 0 56688 Halorubrum 965 genus 68 3 0 1 species 515 Halorubrum trapanicum 29284 0 1 1 0 species 2247 Halorubrum lacusprofundi 382 0 2 22 1 876 Salinigranum 1644057 genus 1 0 755307 854 Salinigranum rubrum species genus 1209988 Halopenitus 398 1 22 2 0 species 376 Halopenitus persicus 1048396 0 1 1 8 8 0 family 1644056 Haloferacaceae 2983 1 2 1 0 genus 60846 470 Halogeometricum 0 1 species Halogeometricum borinquense 469 60847 0 1 genus 409 293431 species 293091 409 Haloquadratum walsbyi 1 0 2251 2096 Haloferax genus 4 59 0 1 726 Haloferax volcanii 2246 species 0 1 species 35746 Haloferax gibbonsii 911 1 0 1 0 species 2252 Haloferax mediterranei 400 1 0 2678336 359 no rank species halophilic archaeon DL31 359 756883 0 1 30 49 0 1 224756 Methanomicrobia 19891 class 1 29 27 0 order 94695 14030 Methanosarcinales family 2206 12911 Methanosarcinaceae 1 24 1 0 genus 196136 409 1 0 39669 409 Methanosalsum zhilinae species 1 0 0 13 37 1 9457 Methanosarcina 2207 genus 0 4 2493 2644672 no rank 0 1 species 467 Methanosarcina sp. WWM596 1434103 0 1 species 644 Methanosarcina sp. MTP4 1434100 1 0 1434102 602 Methanosarcina sp. WH1 species 1 0 1434099 780 Methanosarcina sp. Kolksee species 1 0 38027 1355 Methanosarcina siciliae species 1 0 2208 Methanosarcina barkeri 1782 species species 873 Methanosarcina horonobensis 418008 0 1 species 2214 619 Methanosarcina acetivorans 1 0 967 Methanosarcina mazei 2209 species 0 1 species 562 Methanosarcina vacuolata 2215 0 1 2210 Methanosarcina thermophila 413 species 1 0 356 Methanosarcina lacustris 170861 species 0 1 genus 556 101191 0 1 101192 556 Methanomethylovorans hollandica species 1 0 0 5 3 1 Methanococcoides 870 2225 genus 1 0 29291 Methanococcoides burtonii 464 species species Methanococcoides methylutens 401 2226 0 1 2175 Methanohalophilus 862 genus 16 3 0 1 1 0 2177 434 Methanohalophilus halophilus species 0 1 Methanohalophilus mahii 412 2176 species genus 343 2321 0 1 1 0 2322 343 Methanohalobium evestigatum species 413 2220 genus 0 1 species 413 Methanolobus psychrophilus 420950 0 1 4 8 0 1 143067 1092 Methanosaetaceae family 2222 Methanothrix 1084 genus 5 3 0 1 species 2223 601 Methanothrix soehngenii 1 0 0 1 species 478 Methanosaeta harundinacea 301375 1 0 3 5 order Methanocellales 889 570264 1 0 2 4 family Methanocellaceae 886 570265 570266 Methanocella 884 genus 4 3 0 1 Methanocella conradii 254 1175444 species 0 1 626 Methanocella arvoryzae 1175445 species 0 1 order Methanomicrobiales 4942 2191 1 0 24 14 0 1 361 196137 family 361 2202 genus 0 1 361 Methanospirillum hungatei 2203 species 0 1 family 2194 Methanomicrobiaceae 2427 1 9 6 0 genus Methanoculleus 1961 45989 1 0 31 4 0 1 611 2619537 no rank 1 0 86622 Methanoculleus sp. MAB1 611 species 83986 Methanoculleus bourgensis 710 species 1 0 1 0 species 2198 609 Methanoculleus marisnigri 0 1 genus 457 230355 457 Methanolacinia petrolearia 54120 species 0 1 4 0 family 1198451 1621 475087 528 Methanosphaerula genus 2 16 0 1 512 Methanosphaerula palustris 475088 species 0 1 genus 1093 395331 0 2 369 Methanoregula boonei 358766 species 0 1 1 0 species 882104 Methanoregula formicica 724 family 88404 509 2 0 0 1 2 1 Methanocorpusculum 509 2192 genus Methanocorpusculum labreanum 508 83984 species 0 1 4976 2283796 clade 0 18 class 183967 4771 Thermoplasmata 1 16 22 0 0 1 837 1234666 no rank 0 1 837 methanogenic archaeon ISO4-H5 1495144 species 0 1 8 1 Thermoplasmatales 2549 2301 order 0 2 409 46659 family 0 2 409 2302 genus 0 1 Thermoplasma acidophilum 101 2303 species species 308 Thermoplasma volcanium 50339 0 1 family 283 46630 0 1 0 1 283 46631 genus Picrophilus torridus 283 82076 species 0 1 family 619 90142 0 2 2 0 genus 74968 619 species Ferroplasma acidarmanus 359 97393 0 1 1 0 74969 260 Ferroplasma acidiphilum species 0 1 no rank 992 1919231 1054217 992 Thermoplasmatales archaeon BRNA1 species 1 0 245 1747776 family 0 1 1747777 245 genus 1 0 species 245 Cuniculiplasma divulgatum 1673428 0 1 1 1 6 0 order 1235850 Methanomassiliicoccales 1363 1 0 3 5 family 826 Methanomassiliicoccaceae 1577788 genus 1080709 579 1 0 species 1406512 579 Candidatus Methanomassiliicoccus intestinalis 1 0 1607807 242 genus 1 0 242 Candidatus Methanoplasma termitum 1577791 species 0 1 2 0 family 2517203 536 genus Candidatus Methanomethylophilus 536 1291539 1 0 52 2 0 1 species 484 Candidatus Methanomethylophilus alvus 1291540 clade 205 1803510 0 2 0 2 205 379546 genus 0 1 80 2633939 no rank 1 0 673860 Aciduliprofundum sp. MAR08-339 80 species species 379547 125 Aciduliprofundum boonei 1 0 1 name 0 0 superkingdom Bacteria 42796395 2 1 0 193 4437 phylum 19783 200918 0 44 0 44 28 1 19783 Thermotogae 188708 class order 2419 Thermotogales 13181 1 20 28 0 0 6 10 1 Fervidobacteriaceae 5576 1643950 family 0 5 5 1 Thermosipho 3812 2420 genus 1153 Thermosipho africanus 2421 species 0 1 0 1 938 Thermosipho melanesiensis 46541 species 2 0 no rank 2676525 1716 1 0 species 1437364 857 Thermosipho sp. 1070 859 Thermosipho sp. 1063 1462747 species 0 1 genus 2422 1758 Fervidobacterium 1 4 7 0 1 0 93466 708 Fervidobacterium pennivorans species 1 0 species 2423 425 Fervidobacterium islandicum 0 1 618 Fervidobacterium nodosum 2424 species Thermotogaceae 7585 188709 family 0 52 17 1 2335 5103 Thermotoga genus 11 134 0 1 no rank 2631113 1791 4 0 species Thermotoga sp. Cell2 455 1157947 0 1 1 0 species 126740 514 Thermotoga sp. RQ2 Thermotoga sp. RQ7 493 126738 species 0 1 1157948 329 Thermotoga sp. 2812B species 1 0 1 0 species 2336 399 Thermotoga maritima 1 0 2337 Thermotoga neapolitana 517 species 1 0 93930 523 Thermotoga naphthophila species 574 Thermotoga caldifontis 1508419 species 0 1 1508420 Thermotoga profunda 692 species 1 0 species Thermotoga petrophila 473 93929 0 1 genus 2430 Pseudothermotoga 1643951 1 0 5 94 species Pseudothermotoga thermarum 529 119394 0 1 38322 580 Pseudothermotoga elfii species 1 0 177758 Pseudothermotoga lettingae 607 species 1 0 species 57487 620 Pseudothermotoga hypogea 1 0 1478 Kosmotogales 1643946 order 0 7 12 1 12 6 0 1 1643948 Kosmotogaceae 1466 family 3 6 0 1 651456 966 Kosmotoga genus 1 0 species 1330330 Kosmotoga pacifica 618 species 342 Kosmotoga olearia 651457 0 1 genus 1184396 Mesotoga 488 1 3 2 0 0 1 485 Mesotoga prima 1184387 species 1 0 4 8 order Petrotogales 5096 1643947 0 7 5092 1643949 family 3 2 0 1 1511648 Defluviitoga 765 genus 0 1 species 762 Defluviitoga tunisiensis 1006576 genus 893 Petrotoga 28236 1 0 2 4 69499 889 Petrotoga mobilis species 1 0 genus 160798 3434 Marinitoga 1 3 29 0 no rank 1725 2640159 0 1 species 1545835 Marinitoga sp. 1137 1725 1 0 0 1 Marinitoga piezophila 1680 149715 species 3395 200938 phylum 0 5 1 0 8 5 class Chrysiogenetes 3395 118001 order 189769 Chrysiogenales 3387 1 40 4 0 1 30 3 0 family 189770 Chrysiogenaceae 3347 0 15 2 1 Desulfurispirillum 3317 393029 genus 0 1 Desulfurispirillum indicum 3302 936456 species phylum 7971 200783 0 27 187857 Aquificae 7971 class 7 27 0 1 32069 6977 Aquificales order 21 24 0 1 family 3281 Aquificaceae 64898 1 0 12 3 Aquifex 179 2713 genus 0 1 2 1 1 0 species 63363 Aquifex aeolicus 178 6 33 0 1 168657 2541 Hydrogenobaculum genus 0 5 2508 2622382 no rank 0 1 species 564 Hydrogenobaculum sp. 3684 547143 547146 Hydrogenobaculum sp. SN 563 species 1 0 species 565 Hydrogenobaculum sp. HO 547144 0 1 0 1 species 564 Hydrogenobaculum sp. SHO 547145 1 0 380749 Hydrogenobaculum sp. Y04AAS1 252 species 2 0 genus 75905 351 0 1 species 211 Thermocrinis ruber 75906 species 136094 Thermocrinis albus 140 1 0 207 939 genus 0 1 1 0 940 207 Hydrogenobacter thermophilus species family 3176 Hydrogenothermaceae 224027 1 0 6 9 4 3 0 1 212790 Sulfurihydrogenibium 2328 genus 1577 2619248 no rank 0 1 1 0 436114 Sulfurihydrogenibium sp. YO3AOP1 1577 species 1 0 species 309806 Sulfurihydrogenibium azorense 747 1 2 0 1 182899 Persephonella 839 genus 309805 838 Persephonella marina species 1 0 496 90150 no rank 0 2 412592 496 Thermosulfidibacter genus 2 1 0 1 1 0 412593 Thermosulfidibacter takaii 495 species order Desulfurobacteriales 987 1485951 1 0 4 5 1 4 1 0 family 558314 983 Desulfurobacteriaceae 0 2 7 1 452 Thermovibrio 171868 genus 0 1 Thermovibrio ammonificans 445 228745 species 1 0 genus 64159 530 Desulfurobacterium thermolithotrophum 530 64160 species 0 1 phylum 75308 203691 0 57 0 57 216 1 75308 Spirochaetia 203692 class 8 0 order 1643688 5299 family 170 Leptospiraceae 5299 1 34 8 0 genus 901 338321 0 1 0 1 901 Turneriella parva 29510 species 4364 Leptospira 171 genus 0 6 12 1 species 1300 Leptospira interrogans 173 0 1 1 0 174 945 Leptospira borgpetersenii species species Leptospira santarosai 743 28183 0 1 0 1 611 Leptospira biflexa 172 species species 753 Leptospira alstonii 28452 0 1 order 136 59064 Spirochaetales 1 41 1324 0 family 1643685 Borreliaceae 5041 1 10 17 0 2928 Borrelia 138 genus 0 8 52 1 Borrelia miyamotoi 557 47466 species 0 1 1 0 44449 Borrelia recurrentis 385 species Borrelia turicatae 335 142 species 0 1 species Borrelia parkeri 432 141 0 1 Borrelia hermsii 392 140 species 0 1 species 143 Borrelia anserina 287 1 0 1 0 40834 Borrelia duttonii 488 species 1 80 8 0 genus 64895 Borreliella 2103 0 1 Borreliella garinii 497 29519 species 0 1 species Borreliella burgdorferi 352 139 species 335 Borreliella bissettii 64897 0 1 109 Borreliella valaisiana 62088 species 0 1 species 664662 191 Borreliella bavariensis 1 0 214 Borreliella afzelii 29518 species 0 1 1674146 325 Borrelia mayonii species 1 0 23 383 0 1 137 52699 Spirochaetaceae family genus 3501 Spirochaeta 146 1 0 3 5 0 1 1778 Spirochaeta thermophila 154 species 46355 1718 Spirochaeta africana species 1 0 genus 37972 Treponema 157 1 0 12 527 0 1 1567 Treponema caldarium 215591 species 1 0 2638727 7174 no rank 1 0 1539298 Treponema sp. OMZ 838 7174 species species Treponema succinifaciens 12495 167 0 1 0 1 1934 Treponema primitia 88058 species 0 1 species 249 Treponema pallidum 160 species Treponema denticola 2758 158 0 1 1 0 species 221027 5400 Treponema putidum 53435 235 Treponema paraluiscuniculi species 1 0 species 81028 Treponema brennaborense 2580 1 0 2294 Treponema azotonutricium 150829 species 0 1 1 0 species 409322 759 Treponema pedis Salinispira 1929 1616789 genus 0 2 2 1 0 1 species Salinispira pacifica 1927 1307761 1 0 1911556 3594 genus 1 0 species 55206 Sediminispirochaeta smaragdinae 3594 1 21 4 0 genus 399320 Sphaerochaeta 5320 Sphaerochaeta globosa 2461 1131703 species 0 1 0 1 1369 Sphaerochaeta pleomorpha 1131707 species 1 0 species 273376 1469 Sphaerochaeta coccoides 6 7 0 1 1643686 Brachyspirales 10729 order 0 58 6 1 Brachyspiraceae 10723 143786 family 1 5 69 0 genus 29521 10665 Brachyspira species 84378 1418 Brachyspira murdochii 1 0 1 0 species 159 Brachyspira hyodysenteriae 2292 84377 2226 Brachyspira intermedia species 1 0 52584 Brachyspira pilosicoli 4660 species 1 0 5 0 68297 1405 phylum 5 0 class 203486 1405 Dictyoglomales 1405 203487 order 0 1 5 1 203488 Dictyoglomaceae 1404 family 1 4 0 1 1 0 3 1 genus 1403 Dictyoglomus 13 0 1 species 686 Dictyoglomus turgidum 513050 1 0 species 14 Dictyoglomus thermophilum 716 4 0 phylum 1930617 1939 class 1962850 1939 Calditrichae 1 4 13 0 1 5 3 0 order 1962852 Calditrichales 1926 1962854 1921 family 2 0 0 11 2 1 Caldithrix 1921 187144 genus 1 0 species 187145 Caldithrix abyssi 1910 32066 42432 phylum 24 0 42432 Fusobacteriia 203490 class 0 24 54 1 42378 Fusobacteriales 203491 order 0 23 84 1 family 203492 29259 Fusobacteriaceae 1 12 59 0 1742 Ilyobacter 167639 genus 0 2 3 1 0 1 species Ilyobacter polytropus 1739 167642 9 110 0 1 848 27458 Fusobacterium genus species Fusobacterium hwasookii 2482 1583098 0 1 849 Fusobacterium gonidiaformans 1186 species 1 0 species 2315 Fusobacterium mortiferum 850 0 1 0 1 Fusobacterium periodonticum 5395 860 species 1 0 856 3953 Fusobacterium varium species 859 Fusobacterium necrophorum 1115 species 1 0 861 Fusobacterium ulcerans 2194 species 1 0 851 8708 Fusobacterium nucleatum species 1 0 1129771 13035 Leptotrichiaceae family 10 8 0 1 7624 Leptotrichia 32067 genus 0 5 8 1 40542 Leptotrichia buccalis 1735 species 1 0 0 3 5881 2633022 no rank 1736 Leptotrichia sp. oral taxon 847 1785996 species 0 1 species 2675 Leptotrichia sp. oral taxon 212 712357 0 1 1470 Leptotrichia sp. oral taxon 498 712368 species 0 1 34104 1522 genus 1 0 0 1 species Streptobacillus moniliformis 1522 34105 0 1 1569 168808 genus 1 0 species 187101 1569 Sneathia amnii 0 2 5 1 2312 Sebaldella 32068 genus 0 1 species Sebaldella termitidis 2307 826 clade 1783272 24644001 1717 0 1 166 653 0 phylum 201174 Actinobacteria 1845764 964 1752188 no rank 0 4 0 1 species 82 Actinobacteria bacterium IMCC26077 1848755 0 1 species 275 Actinobacteria bacterium IMCC26103 1848756 species 1848255 436 Actinobacteria bacterium IMCC25003 1 0 0 1 species 171 Actinobacteria bacterium IMCC19121 1848754 Acidimicrobiia 2025 84992 class 0 4 7 1 1 80 6 0 order 84993 Acidimicrobiales 2021 0 2 1506 2448023 family genus 682522 Ilumatobacter 1506 1 10 2 0 1496 Ilumatobacter coccineus 467094 species 0 1 0 4 3 1 Acidimicrobiaceae 435 84994 family 53634 Acidimicrobium 431 genus 6 2 0 1 1 0 species 53635 Acidimicrobium ferrooxidans 425 1 597 8599 0 class 1760 1680171 Actinobacteria order 3898 Catenulisporales 414714 1 0 4 28 family Catenulisporaceae 3870 414877 1 0 43 3 1 25 2 0 genus 414878 Catenulispora 3827 0 1 3802 Catenulispora acidiphila 304895 species order 1642 Actinopolysporales 622450 1 0 4 3 2 3 0 1 622451 Actinopolysporaceae 1639 family 2 11 0 1 1849 1637 Actinopolyspora genus 1 0 414996 Actinopolyspora erythraea 1626 species order 85004 Bifidobacteriales 888880 1 190 26 0 Bifidobacteriaceae 888690 31953 family 0 6770 25 1 genus 1090 196081 0 1 0 1 species Scardovia inopinata 1090 78259 genus Gardnerella 2629 2701 1 0 1 2 2628 Gardnerella vaginalis 2702 species 0 1 1 1657 19 0 genus 1678 Bifidobacterium 876412 0 1 species Bifidobacterium animalis 2890 28025 species 192211 Bifidobacterium pseudocatenulatum 28026 0 1 1694 3630 Bifidobacterium pseudolongum species 1 0 0 1 5934 Bifidobacterium scardovii 158787 species 1691 1219 Bifidobacterium indicum species 1 0 1 0 species 1687 Bifidobacterium coryneforme 1087 1 0 species 638619 Bifidobacterium actinocoloniiforme 1651 0 1 Bifidobacterium dentium 4358 1689 species 0 1 Bifidobacterium angulatum 7209 1683 species 1 0 species 1685 73407 Bifidobacterium breve species Bifidobacterium catenulatum 77176 1686 1 0 24029 2 0 1 subspecies 53147 Bifidobacterium kashiwanohense 630129 306788 Bifidobacterium longum 216816 species 0 1 0 1 species 172103 Bifidobacterium bifidum 1681 species 35760 2283 Bifidobacterium choerinum 1 0 0 1 species Bifidobacterium asteroides 2125 1684 0 1 species 16575 Bifidobacterium adolescentis 1680 1 0 33905 Bifidobacterium thermophilum 4109 species genus 196082 Parascardovia 1789 1 1 2 0 1 0 78258 1788 Parascardovia denticolens species 31385 Actinomycetales 2037 order 0 19 57 1 family Actinomycetaceae 31328 2049 1 0 4084 18 genus 2529408 2125 1 0 Actinomyces meyeri 2125 52773 species 0 1 1653174 1123 Actinotignum genus 2 9 0 1 0 1 Actinotignum schaalii 1114 59505 species genus 752 28263 0 1 0 1 species Arcanobacterium haemolyticum 752 28264 1069494 2995 Trueperella genus 2 10 0 1 species 1661 Trueperella pyogenes 2985 1 0 2 203 0 1 2050 3870 Mobiluncus genus 2051 3667 Mobiluncus curtisii species 1 0 0 9 316 1 16379 Actinomyces 1654 genus 0 1 species Actinomyces radicidentis 2058 111015 1379 Actinomyces gaoshouyii 1960083 species 0 1 0 1 species Actinomyces sp. VUL4_3 625 1912795 0 1 1967 Actinomyces oris 544580 species 3 0 no rank 2609248 6070 species 1566 Actinomyces sp. Chiba101 1851395 0 1 712122 Actinomyces sp. oral taxon 414 2216 species 1 0 1 0 2081702 Actinomyces sp. oral taxon 897 2288 species 3964 Actinomyces pacaensis 1852377 species 0 1 1 181 34 0 order 85009 Propionibacteriales 41879 368 20 0 1 31957 Propionibacteriaceae 28322 family 0 2 16 1 2506 Acidipropionibacterium 1912215 genus 1 0 1748 Acidipropionibacterium acidipropionici 2490 species 1 0 36 4 genus Cutibacterium 4294 1912216 0 1 species 2142 Cutibacterium avidum 33010 1 0 1747 Cutibacterium acnes 1135 species 0 1 Cutibacterium granulosum 981 33011 species 1 5 50 0 genus 72763 8110 Tessaracoccus 1 0 2635419 2227 no rank 0 1 Tessaracoccus sp. T2.5-30 2227 1909732 species 1 0 1332264 Tessaracoccus aquimaris 2140 species Tessaracoccus flavescens 1857 399497 species 0 1 1 0 1610493 Tessaracoccus flavus 1836 species genus Propionimicrobium 2982 203133 1 0 1 2 0 1 2981 2633994 no rank 0 1 species 2981 Propionimicrobium sp. Marseille-P3275 1871034 4 2 0 1 29404 Microlunatus 1499 genus species Microlunatus phosphovorus 1495 29405 0 1 0 1 genus 1620 2801844 1620 Pseudopropionibacterium propionicum 1750 species 0 1 0 142 3 1 Propionibacterium 6943 1743 genus 0 1 no rank 712 2608905 1 0 species 671223 712 Propionibacterium sp. oral taxon 193 species 6089 Propionibacterium freudenreichii 1744 0 1 1 0 283 13 family Nocardioidaceae 13376 85015 0 23 2 1 Kribbella 2226 182639 genus Kribbella flavida 2203 182640 species 0 1 genus 1839 5465 Nocardioides 1 4 111 0 2072 2615069 no rank 0 1 species 196162 2072 Nocardioides sp. JS614 1 0 Nocardioides dokdonensis 1568 450734 species 0 1 2045452 Nocardioides sp. 78 1714 species 1 0 116071 1759 Micropruina genus 2 18 0 1 1 0 75385 1741 Micropruina glycogenica species 0 32 2 1 Aeromicrobium 1599 2040 genus 1 0 2041 1567 Aeromicrobium erythreum species 2044 Pimelobacter 2044 genus 13 2 0 1 species 2045 Pimelobacter simplex 2031 1 0 0 1392 143 1 Micrococcales 140835 85006 order family 85017 8438 Promicromonosporaceae 1 9 112 0 3 47 0 1 254250 3033 Isoptericola genus 1 0 species 372663 Isoptericola dokdonensis 1783 species 1203 Isoptericola variabilis 139208 0 1 genus 3130 Cellulosimicrobium 157920 1 0 3 44 0 1 no rank 1328 2624466 species 1980001 1328 Cellulosimicrobium sp. TH-20 1 0 0 1 Cellulosimicrobium cellulans 1758 1710 species 0 20 2 1 Xylanimonas 2163 186188 genus 0 1 species Xylanimonas cellulosilytica 2143 186189 7 116 0 1 145357 4377 Dermacoccaceae family genus 745364 Luteipulveratus 1604 1 15 2 0 species 571913 Luteipulveratus mongoliensis 1589 1 0 0 27 2 1 Kytococcus 1516 57499 genus 1 0 1276 1489 Kytococcus sedentarius species 57495 1141 Dermacoccus genus 2 5 0 1 species Dermacoccus nishinomiyaensis 1136 1274 0 1 86 9 0 1 85021 Intrasporangiaceae 6134 family genus Intrasporangium 1155 53357 1 0 22 2 species Intrasporangium calvum 1133 53358 0 1 genus Janibacter 1186 53457 1 0 39 2 Janibacter indicus 1147 857417 species 0 1 1 0 40 2 genus Arsenicicoccus 1896 267408 0 1 1856 2663846 no rank 1658671 Arsenicicoccus sp. oral taxon 190 1856 species 1 0 265976 Serinicoccus 1811 genus 30 2 0 1 1 0 1758689 Serinicoccus sp. JLT9 1781 species 0 39 2064 1 53672 Micrococcaceae 1268 family 1491 Sinomonas 596707 genus 0 2 20 1 37927 1471 Sinomonas atrocyanea species 1 0 0 1 genus 407 1645 species Renibacterium salmoninarum 407 1646 0 1 genus Micrococcus 2181 1269 1 0 23 2 species 1270 Micrococcus luteus 2158 1 0 57493 5090 Kocuria genus 4 86 0 1 1 0 species 71999 1517 Kocuria palustris 0 1 1959 Kocuria rhizophila 72000 species 0 1 1528 Kocuria flava 446860 species 0 1 genus 713 2078575 1 0 species 1618207 713 Arthrobacter sp. IHBB 11108 genus 32207 4729 Rothia 1 3 2 0 0 1 species Rothia mucilaginosa 3884 43675 species 843 Rothia dentocariosa 2047 0 1 genus Arthrobacter 26021 1663 1 0 580 15 0 1 species 2606 Arthrobacter alpinus 656366 no rank 235627 20425 12 0 Arthrobacter sp. PGP41 1916 2079227 species 0 1 species 1771959 1111 Arthrobacter sp. ATCC 21022 1 0 1 0 species 1806905 1130 Arthrobacter sp. ZXY-2 1 0 1849032 1732 Arthrobacter sp. U41 species 0 1 1023 Arthrobacter sp. Rue61a 1118963 species 1 0 species 1652545 Arthrobacter sp. YC-RL1 2347 species Arthrobacter sp. QXT-31 1646 1357915 0 1 Arthrobacter sp. LS16 2682 1690248 species 0 1 species Arthrobacter sp. YN 1565 2020486 0 1 1494608 Arthrobacter sp. PAMC 25486 1831 species 1 0 1 0 species 1704044 Arthrobacter sp. ERGS1:01 1731 0 1 species Arthrobacter sp. FB24 1711 290399 species 37928 2410 Arthrobacter crystallopoietes 1 0 genus 1411 Paenarthrobacter 1742992 1 0 2 7 species Paenarthrobacter aurescens 1404 43663 0 1 0 2 12 1 2327 Glutamicibacter 1742989 genus species 2315 Glutamicibacter arilaitensis 256701 0 1 1 0 2 3 genus 1154 Neomicrococcus 1868332 1 0 556325 1151 Neomicrococcus aestuarii species 0 4 53 1 6084 Pseudarthrobacter 1742993 genus species 361575 Pseudarthrobacter phenanthrenivorans 1812 1 0 1 0 species 121292 2355 Pseudarthrobacter sulfonivorans 0 1 species Pseudarthrobacter chlorophenolicus 1864 85085 family 85022 507 1 0 0 1 genus 507 43673 species 507 Jonesia denitrificans 43674 0 1 1 0 11 132 family 11577 Dermabacteraceae 85020 1 0 1 2 genus Dermabacter 661 36739 1 0 species 1630135 Dermabacter vaginalis 660 1 0 2 3 genus 692 Devriesea 472568 1 0 species 472569 689 Devriesea agamarum genus 10092 Brachybacterium 43668 1 0 6 263 1 0 species 2017485 Brachybacterium sp. VR2415 1644 species 1939 Brachybacterium ginsengisoli 1331682 0 1 1 0 species 2017484 Brachybacterium sp. VM2412 2005 1 0 no rank 2623841 2010 species 1903186 Brachybacterium sp. P6-10-X1 2010 1 0 43669 2231 Brachybacterium faecium species 1 0 family Microbacteriaceae 42205 85023 1 0 506 46 1 370 6 0 genus 1573 Clavibacter 5845 1 0 5 1171 species 5475 Clavibacter michiganensis 28447 33014 1052 Clavibacter insidiosus subspecies 1 0 1874630 1157 Clavibacter capsici subspecies 1 0 subspecies 31963 Clavibacter nebraskensis 947 1 0 1 0 31964 1148 Clavibacter sepedonicus subspecies genus 1759331 919 1 0 species 1619308 919 Cnuibacter physcomitrellae 1 0 genus 518733 Microterricola 1436 1 5 2 0 Microterricola viridarii 1431 412690 species 0 1 50 4 0 1 2034 Curtobacterium 3587 genus species 69373 1131 Curtobacterium pusillum 1 0 no rank 2406 257496 0 2 0 1 Curtobacterium sp. BH-2-1-1 1129 1905847 species 1277 Curtobacterium sp. MR_MD2014 1561023 species 0 1 no rank 1655488 515 2 0 1655489 515 clade 2 0 529883 515 genus 2 0 Candidatus Rhodoluna planktonica 300 535712 species 0 1 species 529884 215 Rhodoluna lacicola 1 0 genus 1434032 285 1 0 0 1 species 285 Pontimonas salivibrio 1159327 1399 Rathayibacter 33886 genus 0 3 17 1 0 1 Rathayibacter tritici 831 33888 species 551 Rathayibacter toxicus 145458 species 0 1 Agromyces 1606 33877 genus 0 5 2 1 species 453304 1601 Agromyces aureus 1 0 337004 742 Microcella genus 2 1 0 1 species Microcella alkaliphila 741 279828 0 1 447237 Frondihabitans 1554 genus 3 2 0 1 1 0 no rank 2626248 1551 1 0 species 1795630 1551 Frondihabitans sp. PAMC 28766 genus 1705353 307 1 0 0 1 Aurantimicrobium minutum 307 708131 species genus 33882 Microbacterium 16630 1 252 14 0 1596 Microbacterium aurum 36805 species 0 1 2033 Microbacterium testaceum 1106 species 1 0 8 0 no rank 2609290 9881 0 1 species 840 Microbacterium sp. TPU 3598 1938334 1 0 1795053 Microbacterium sp. PAMC 28756 1848 species 2103230 1392 Microbacterium sp. str. 'China' species 1 0 0 1 species 1504 Microbacterium sp. No. 7 1714373 0 1 1184 Microbacterium sp. XT11 367477 species 1010 Microbacterium sp. CGR1 1696072 species 0 1 species Microbacterium sp. BH-3-3-3 1119 1906742 0 1 species 984 Microbacterium sp. 1.5R 1916917 0 1 0 1 species 1542 Microbacterium hominis 162426 84292 1012 Microbacterium chocolatum species 1 0 species 1241 Microbacterium paludicola 300019 0 1 0 20 2 1 Leifsonia 3035 110932 genus 1575 3015 Leifsonia xyli species 1 0 69578 Cryobacterium 3839 genus 120 3 0 1 0 1 no rank 2016 2649013 1978566 Cryobacterium sp. LW097 2016 species 1 0 Cryobacterium arcticum 1703 670052 species 0 1 791 Dermatophilaceae 85018 family 0 3 2 1 Dermatophilus 789 1862 genus 0 16 2 1 species Dermatophilus congolensis 773 1863 0 1 0 5 3 1 Beutenbergiaceae 1352 125316 family Beutenbergia 1347 84756 genus 0 7 2 1 Beutenbergia cavernae 1340 84757 species 0 1 22 3 0 1 145360 Sanguibacteraceae 1830 family 0 2 15 1 1808 Sanguibacter 60919 genus 0 1 Sanguibacter keddieii 1793 60920 species 1 0 63 3 family Brevibacteriaceae 2585 85019 2 38 0 1 1696 2522 Brevibacterium genus species Brevibacterium linens 2484 1703 0 1 no rank 76 577468 0 2 genus Tropheryma 76 2038 1 0 1 2 species 2039 Tropheryma whipplei 75 1 0 0 31 6 1 Cellulomonadaceae 5899 85016 family 1 186 5 0 genus 1707 Cellulomonas 5868 0 1 species Cellulomonas flavigena 1559 1711 11 Cellulomonas gilvus 1110 species 1 0 species 1675 Cellulomonas fimi 1708 0 1 1 0 no rank 2620175 1338 1 0 2003551 1338 Cellulomonas sp. PSBB021 species 85014 2381 Glycomycetales order 4 16 0 1 59 3 0 1 85034 Glycomycetaceae 2365 family 1 0 44 2 genus Stackebrandtia 2306 283810 0 1 2262 Stackebrandtia nassauensis 283811 species 18 4 0 1 1643684 Nakamurellales 2371 order 1 3 54 0 family 85031 2353 Nakamurellaceae 53460 Nakamurella 2299 genus 81 2 0 1 species Nakamurella multipartita 2218 53461 0 1 1 0 8 32 order 7055 Geodermatophilales 1643682 1 133 7 0 family 85030 Geodermatophilaceae 7023 2 109 0 1 88138 2981 Modestobacter genus 477641 Modestobacter marinus 2872 species 1 0 1 0 10 2 genus Blastococcus 1529 38501 0 1 species Blastococcus saxobsidens 1519 138336 1860 Geodermatophilus 2380 genus 34 2 0 1 1 0 1861 2346 Geodermatophilus obscurus species 0 20 66 1 35408 Micromonosporales 85008 order family 28056 Micromonosporaceae 35342 1 525 19 0 1 0 131 4 genus Micromonospora 8084 1873 no rank 3043 2617518 0 1 1 0 648999 3043 Micromonospora sp. L5 species 0 1 species 2126 Verrucosispora maris 1003110 2784 Micromonospora aurantiaca 47850 species 0 1 1 0 95 4 genus Plantactinospora 7941 673534 no rank 7846 2631981 0 3 1 0 species 2024580 2918 Plantactinospora sp. KBS50 1 0 2108470 2417 Plantactinospora sp. BC1 species species 2071627 Plantactinospora sp. BB1 2511 1 0 1 0 84593 12 Verrucosispora genus 1 0 6 335 genus 15374 Actinoplanes 1865 no rank 9123 2626549 0 3 0 1 species 3455 Actinoplanes sp. N902-109 649831 1 0 species 134676 2834 Actinoplanes sp. SE50/110 1 0 species 2033844 Actinoplanes sp. SE50 2834 0 1 Actinoplanes missouriensis 2762 1866 species species Actinoplanes friuliensis 3154 196914 0 1 16 3 0 1 168694 Salinispora 3406 genus 0 1 species Salinispora arenicola 1897 168697 Salinispora tropica 1493 168695 species 0 1 85013 8103 Frankiales order 7 39 0 1 74712 Frankiaceae 8064 family 159 6 0 1 genus 1854 Frankia 7905 1 123 5 0 1 0 298654 Frankia inefficax 2309 species no rank 2632575 2190 1 0 1 0 298653 Frankia sp. EAN1pec 2190 species species 106370 1091 Frankia casuarinae 1 0 species 1859 2192 Frankia alni 1 0 1 0 569 82 order Streptomycetales 201845 85011 2062 201276 Streptomycetaceae family 81 1199 0 1 1 6727 75 0 genus 1883 Streptomyces 187232 1 0 1616117 1702 Streptomyces formicae species 1 0 species 42684 2187 Streptomyces collinus no rank 53113 2593676 0 24 species 1649184 2012 Streptomyces sp. CFMR 7 1 0 0 1 species 2253 Streptomyces sp. CNQ-509 444103 species 1661694 Streptomyces sp. Tue 6075 1940 1 0 1 0 2135430 2676 Streptomyces sp. P3 species 1 0 1972846 Streptomyces sp. Sge12 1999 species 1 0 species 2059884 Streptomyces sp. CMB-StM0423 2749 0 1 species Streptomyces sp. Mg1 2014 465541 1 0 1837283 Streptomyces sp. S8 1933 species 1 0 1841249 Streptomyces sp. RTd22 3161 species 2339 Streptomyces sp. FR-008 206662 species 0 1 species 1812480 2283 Streptomyces sp. fd1-xmd 1 0 1 0 species 1725411 Streptomyces sp. CdTB01 2746 1 0 species 1495638 2858 Streptomyces sp. M56 species Streptomyces sp. WAC00288 2116 2094021 0 1 1849967 Streptomyces sp. SAT1 2432 species 1 0 species 1984801 1429 Streptomyces sp. CLI2509 1 0 0 1 species Streptomyces sp. MOE7 2105 1961713 species 1751294 Streptomyces sp. 4F 1693 1 0 0 1 species Streptomyces sp. CCM_MD2014 2087 1561022 species 2695 Streptomyces sp. 769 1262452 0 1 234612 Streptomyces sp. TN58 1994 species 1 0 862751 1776 Streptomyces sp. SirexAA-E species 1 0 1 0 species 1265601 1708 Streptomyces sp. PAMC 26508 0 1 species 2115 Streptomyces sp. 3211 1964449 species 1642299 Streptomyces alfalfae 2444 1 0 0 1 species Streptomyces niveus 1911 193462 5099 1477431 species group 0 2 1 0 species 1902 Streptomyces coelicolor 2782 0 1 Streptomyces sampsonii 2317 42239 species species 164348 2563 Streptomyces puniciscabiei 1 0 0 1 species 2383 Streptomyces parvulus 146923 Streptomyces gilvosporeus 2259 553510 species 0 1 species 1437453 Streptomyces leeuwenhoekii 2298 1 0 1950 Streptomyces peucetius 1811 species 1 0 1 0 species 67267 2416 Streptomyces alboflavus 1 0 68249 Streptomyces pactum 4648 species 1 0 species 1889 2003 Streptomyces ambofaciens 0 1 1703 Streptomyces avermitilis 33903 species 0 1 Streptomyces lividans 2147 1916 species 0 1 1637 Streptomyces xinghaiensis 1038928 species species 2576 Streptomyces malaysiensis 92644 0 1 1 0 species 75293 Streptomyces autolyticus 2777 species 408015 2487 Streptomyces xiamenensis 1 0 Streptomyces pluripotens 1624 1355015 species 0 1 0 1 Streptomyces reticuli 2507 1926 species 1 0 species 1971 Streptomyces noursei 2194 1 0 68202 Streptomyces fulvissimus 1690 species species 1930 Streptomyces scabiei 2649 1 0 0 1 1694 Streptomyces rubrolavendulae 285473 species 0 1 species 2076 Streptomyces clavuligerus 1901 1935 Streptomyces violaceoruber 1974 species 1 0 species 2425 Streptomyces chartreusis 1969 0 1 species 362257 Streptomyces vietnamensis 2513 1 0 species 38300 Streptomyces pristinaespiralis 2024 1 0 0 1 Streptomyces albireticuli 2040 1940 species species 68570 Streptomyces albulus 2082 1 0 0 1 species Streptomyces lydicus 6187 47763 1912 Streptomyces hygroscopicus 6169 species 1 0 1 0 1907 Streptomyces glaucescens 2477 species 1783515 2063 Streptomyces sp. S10(2016) species 1 0 0 1 species 1572 Streptomyces pratensis 1169025 0 1 Streptomyces venezuelae 3876 54571 species 1 0 1915 Streptomyces lincolnensis 3000 species species 68192 2127 Streptomyces cyaneogriseus 1 0 1 0 1914 Streptomyces lavendulae 2003 species 379067 3433 Streptomyces bingchenggensis species 1 0 1888 Streptomyces albus 5238 species 1 0 0 2 species group 3965 629295 1 0 species subgroup 1482558 1747 1747 Streptomyces globisporus 1908 species 0 1 0 1 2218 1482596 species subgroup 0 1 species 2218 Streptomyces griseus 1911 29303 Streptomyces cattleya 3138 species 1 0 0 1 Streptomyces sp. XZHG99 2136 2049881 species 1 0 species 68280 Streptomyces violaceusniger 2891 2574 Streptomyces griseochromogenes 68214 species 0 1 0 5 132 1 12845 Kitasatospora 2063 genus 0 1 species 2866 Kitasatospora aureofaciens 1894 no rank 3921 2633591 0 1 1 0 2018025 3921 Kitasatospora sp. MMS16-BH015 species 0 1 Kitasatospora albolonga 2400 68173 species species 2066 Kitasatospora setae 3526 1 0 order 622452 Kineosporiales 2453 1 6 4 0 83778 2447 Kineosporiaceae family 3 57 0 1 1 2 16 0 genus 33981 2390 Kineococcus 1 0 131568 Kineococcus radiotolerans 2374 species 1 0 52018 308 no rank 0 1 species 308 Actinobacteria bacterium IMCC26256 1650658 1242 1643818 no rank 0 2 0 4 2 1 Thermobispora 1242 147067 genus species 2006 Thermobispora bispora 1238 1 0 205465 Corynebacteriales 85007 order 0 162 1503 1 no rank 697024 581 1 0 0 1 581 1847725 genus 1 0 species 1528099 581 Lawsonella clevelandensis family 85029 2380 Dietziaceae 1 4 9 0 37914 Dietzia 2371 genus 66 3 0 1 499555 1112 Dietzia timorensis species 1 0 2617939 1193 no rank 1 0 0 1 species Dietzia sp. oral taxon 368 1193 712270 1 0 312 57 family Mycobacteriaceae 75952 1762 Hoyosella 658 697025 genus 0 1 2 1 0 1 Hoyosella subflava 657 639313 species genus 6718 670516 0 5 0 1 Mycobacterium abscessus 2612 36809 species 0 1 1120 Mycobacterium stephanolepidis 1520670 species 1 0 83262 957 Mycobacterium immunogenum species species 821 Mycobacterium chelonae 1774 0 1 1 0 1578165 1208 Mycobacterium saopaulense species genus 1073531 2826 2 0 species 1788 1333 Mycobacterium terrae 1 0 species 875328 Mycobacterium sinense 1493 1 0 0 13 22864 1866885 genus 36814 Mycobacterium rhodesiae 1375 species 1 0 species Mycobacterium vanbaalenii 1538 110539 0 1 0 1 1475 Mycobacterium thermoresistibile 1797 species 0 1 species 2004 Mycobacterium phlei 1771 1 0 species 1800 1565 Mycobacterium chubuense 1626 Mycobacterium neoaurum 1795 species 0 1 0 1 1743 Mycobacterium vaccae 1810 species 1 0 species 1804 1798 Mycobacterium gilvum Mycobacterium smegmatis 2418 1772 species 0 1 134601 1885 Mycobacterium goodii species 1 0 Mycobacterium litorale 1964 758802 species 0 1 species 1766 Mycobacterium fortuitum 1387 1 0 1 0 species 1791 Mycobacterium aurum 2086 1763 42574 Mycobacterium genus 34 3307 0 1 1 0 1809 Mycobacterium ulcerans 1254 species species group 120793 9199 8 0 425 Mycobacterium paraintracellulare 1138383 species 0 1 species Mycobacterium intracellulare 2622 1767 1 0 538 4 1 0 1203599 Mycobacterium yongonense 518 subspecies 1 0 subspecies 222805 Mycobacterium chimaera 1136 1 0 35617 Mycobacterium indicus pranii 430 subspecies species Mycobacterium colombiense 1549 339268 0 1 species 1764 Mycobacterium avium 3302 1 0 0 1 species Mycobacterium marseillense 1301 701042 Mycobacterium kansasii 1737 1768 species 0 1 1 0 2249310 1123 species group species Mycobacterium shigaense 1123 722731 0 1 1781 Mycobacterium marinum 1333 species 1 0 1 0 species 261524 964 Mycobacterium liflandii 482462 1809 Mycobacterium dioxanotrophicus species 1 0 77643 3591 species group 4 0 species 78331 892 Mycobacterium canettii 1 0 1 0 978 3 species Mycobacterium tuberculosis 2699 1773 biotype Mycobacterium africanum 841 33894 0 1 biotype 1765 Mycobacterium bovis 880 1 0 17053 2642494 no rank 0 13 1 0 1682113 1680 Mycobacterium sp. YC-RL4 species 0 1 Mycobacterium sp. MOTT36Y 386 1168287 species species 1920667 1141 Mycobacterium sp. WY10 1 0 1342 Mycobacterium sp. JS623 212767 species 0 1 1 0 species 1570328 1626 Mycobacterium sp. NRRL B-3805 164757 Mycobacterium sp. JLS 1177 species 1 0 species Mycobacterium sp. VKM Ac-1817D 1292 1273687 0 1 species 2332 Mycobacterium sp. djl-10 1879023 0 1 species Mycobacterium sp. MCS 1041 164756 0 1 1080 Mycobacterium sp. KMS 189918 species 0 1 1545728 Mycobacterium sp. EPa45 1364 species 1 0 0 1 1084 Mycobacterium sp. QIA-37 1561223 species 2051552 1508 Mycobacterium sp. PYR15 species 1 0 1 0 species 1769 Mycobacterium leprae 276 0 1 Mycobacterium haemophilum 928 29311 species 1653 Corynebacteriaceae 64379 family 451 52 0 1 Corynebacterium 63928 1716 genus 0 1674 51 1 0 1 1954 Corynebacterium sphenisci 191493 species 0 1 845 Corynebacterium pseudotuberculosis 1719 species 0 1 Corynebacterium falsenii 1770 108486 species 0 1 species Corynebacterium frankenforstense 2164 1230998 161879 Corynebacterium kroppenstedtii 496 species 1 0 0 1 854 Corynebacterium deserti 1408191 species 0 1 749 Corynebacterium terpenotabidum 89154 species species 1050174 700 Corynebacterium epidermidicanis 1 0 species 1121358 1584 Corynebacterium doosanense 1 0 0 1 species Corynebacterium aquilae 1130 203263 species Corynebacterium resistens 772 258224 0 1 2132 Corynebacterium jeikeium 38289 species 0 1 species Corynebacterium halotolerans 2008 225326 0 1 2102 Corynebacterium simulans 146827 species 0 1 156978 1536 Corynebacterium imitans species 1 0 1 0 species 1721 931 Corynebacterium callunae 1 0 species 161896 Corynebacterium camporealensis 1144 species 1072256 Corynebacterium uterequi 1299 1 0 0 1 Corynebacterium diphtheriae 1139 1717 species 0 1 species 1304 Corynebacterium testudinoris 136857 0 1 1022 Corynebacterium glyciniphilum 1404244 species 0 2 no rank 1807 2624378 1487956 Corynebacterium sp. ATCC 6931 731 species 1 0 0 1 species 1076 Corynebacterium sp. NML98-0116 702967 1 0 92706 [Brevibacterium] flavum 777 species 161895 Corynebacterium phocae 849 species 1 0 2531 Corynebacterium striatum 43770 species 0 1 621 Corynebacterium argentoratense 42817 species 0 1 1 0 1223514 1780 Corynebacterium humireducens species 779 Corynebacterium mustelae 571915 species 0 1 1 0 species 191610 Corynebacterium atypicum 1169 1 0 species 1727 1609 Corynebacterium variabile 0 1 1108 Corynebacterium stationis 1705 species 0 1 Corynebacterium ulcerans 1101 65058 species 1 0 187491 Corynebacterium glaucum 1238 species 1 0 species 1652495 Corynebacterium crudilactis 515 Corynebacterium marinum 1171 349751 species 0 1 1 0 species 152794 1730 Corynebacterium efficiens Corynebacterium maris 1033 575200 species 0 1 1138 Corynebacterium ammoniagenes 1697 species 0 1 401472 Corynebacterium ureicelerivorans 1187 species 1 0 species Corynebacterium glutamicum 1784 1718 0 1 species 43771 1474 Corynebacterium urealyticum 1 0 1 0 species 161899 Corynebacterium singulare 967 169292 1867 Corynebacterium aurimucosum species 1 0 Corynebacterium vitaeruminis 2362 38305 species 0 1 1 0 species 160386 1000 Corynebacterium casei 1 0 35757 717 Corynebacterium cystitidis species species 35755 293 Corynebacterium kutscheri 1 0 species 1231000 1049 Corynebacterium lactis 1 0 1 0 species 28028 Corynebacterium flavescens 963 9533 Gordoniaceae 85026 family 0 9 165 1 genus Gordonia 9368 2053 1 0 183 8 species 1004901 Gordonia iterans 1566 1 0 species Gordonia bronchialis 1190 2054 0 1 0 1 1319 Gordonia phthalatica 1136941 species no rank 2657482 2237 2 0 species 2059875 952 Gordonia sp. YC-JH1 1 0 species 337191 1285 Gordonia sp. KTR9 1 0 species Gordonia polyisoprenivorans 1624 84595 0 1 1 0 species 2055 1249 Gordonia terrae family 85025 Nocardiaceae 47182 1 268 31 0 23 1031 0 1 1827 28496 Rhodococcus genus 1 0 43767 Rhodococcus hoagii 1527 species 1 0 species 103816 Rhodococcus pyridinivorans 949 1 0 1830 Rhodococcus ruber 1497 species species 132919 1510 Rhodococcus jostii 1 0 0 1 species Rhodococcus aetherivorans 1626 191292 species Rhodococcus qingshengii 910 334542 0 1 0 1 species 1091 Rhodococcus fascians 1828 0 1 3818 Rhodococcus opacus 37919 species 1 0 1829 Rhodococcus rhodochrous 896 species 0 12 12319 192944 no rank 0 1 species 1753 Rhodococcus sp. WB1 1033922 0 1 species Rhodococcus sp. 2G 721 1570939 0 1 species Rhodococcus sp. WMMA185 626 679318 1 0 1805827 1291 Rhodococcus sp. MTM3W5.2 species 1 0 1727214 Rhodococcus sp. H-CA8f 970 species species Rhodococcus sp. BH4 832 1807790 0 1 species Rhodococcus sp. YL-1 878 1045808 0 1 1653478 1036 Rhodococcus sp. PBTS 1 species 1 0 822 Rhodococcus sp. 008 1723645 species 0 1 1 0 species 935199 916 Rhodococcus sp. p52 species 1653479 Rhodococcus sp. PBTS 2 1168 1 0 1564114 Rhodococcus sp. B7740 1306 species 1 0 0 1 species Rhodococcus erythropolis 1322 1833 1817 Nocardia 18418 genus 274 7 0 1 2664 Nocardia farcinica 37329 species 0 1 species Nocardia brasiliensis 3843 37326 0 1 2754 Nocardia seriolae 37332 species 0 1 0 1 Nocardia nova 2013 37330 species 0 1 Nocardia terpenica 2495 455432 species 1 0 species 135487 Nocardia cyriacigeorgica 4375 3038 Tsukamurellaceae 85028 family 0 4 10 1 1 3 38 0 genus 2060 3028 Tsukamurella 1 0 57704 1969 Tsukamurella tyrosinosolvens species 2061 Tsukamurella paurometabola 1021 species 1 0 316606 917 Segniliparaceae family 3 11 0 1 4 2 0 1 286801 Segniliparus 906 genus 1 0 286802 902 Segniliparus rotundus species 573 1643683 order 0 3 1 0 4 3 family Acidothermaceae 573 85032 genus Acidothermus 569 28048 1 0 10 2 0 1 559 Acidothermus cellulolyticus 28049 species order 85010 69077 Pseudonocardiales 1 42 175 0 41 913 0 1 2070 68902 Pseudonocardiaceae family 10 2 0 1 674734 Alloactinosynnema 1986 genus no rank 2636053 1976 1 0 1 0 species 1653480 Alloactinosynnema sp. L-07 1976 1 2 10 0 genus 165301 2516 Lentzea 1586287 2506 Lentzea guizhouensis species 1 0 0 6 186 1 9986 Actinoalloteichus 65496 genus species 340345 Actinoalloteichus hymeniacidonis 1351 1 0 species 2158 Actinoalloteichus hoggarensis 1470176 0 1 2 0 2644606 4108 no rank species 1612551 Actinoalloteichus sp. GBA129-24 2184 1 0 2072503 Actinoalloteichus sp. AHMU CJ021 1924 species 1 0 0 1 species 2183 Actinoalloteichus sp. ADI127-7 1612552 genus 142577 1837 Prauserella 1 2 11 0 species 530584 Prauserella marina 1826 1 0 1847 13240 Pseudonocardia genus 8 238 0 1 11197 2619320 no rank 0 6 species Pseudonocardia sp. EC080610-09 1912 1688404 0 1 species 1096868 Pseudonocardia sp. EC080625-04 1765 1 0 0 1 species 1886 Pseudonocardia sp. HH130630-07 1690815 445576 Pseudonocardia sp. AL041005-10 1969 species 1 0 1 0 species 1096856 1956 Pseudonocardia sp. EC080619-01 species Pseudonocardia sp. HH130629-09 1709 1641402 0 1 0 1 species Pseudonocardia dioxanivorans 1805 240495 genus 17010 Amycolatopsis 1813 1 0 7 284 2618356 4623 no rank 2 0 0 1 Amycolatopsis sp. BJA-103 2088 1911175 species species Amycolatopsis sp. AA4 2535 1896961 0 1 species 31958 4205 Amycolatopsis orientalis 1 0 208439 Amycolatopsis japonica 2041 species 1 0 species 2300 Amycolatopsis methanolica 1814 0 1 Amycolatopsis mediterranei 3557 33910 species 0 1 1 2 18 0 genus 1835 3157 Saccharopolyspora 1 0 species 1836 Saccharopolyspora erythraea 3139 0 18 2 1 Kutzneria 4258 43356 genus 43357 Kutzneria albida 4240 species 1 0 1 2 4 0 genus 2029 2386 Kibdelosporangium 860235 Kibdelosporangium phytohabitans 2382 species 1 0 genus 2071 3236 Saccharothrix 1 2 9 0 species 103731 Saccharothrix espanaensis 3227 1 0 genus 40566 7409 Actinosynnema 1 3 253 0 species 40567 3388 Actinosynnema mirum 1 0 species 3768 Actinosynnema pretiosum 42197 0 1 0 2 3 1 968 Saccharomonospora 1851 genus species 1852 965 Saccharomonospora viridis 1 0 order 85012 23782 Streptosporangiales 1 16 149 0 0 15 3 1 Thermomonosporaceae 4328 2012 family 0 2 84 1 4313 Thermomonospora 2019 genus 0 1 species Thermomonospora curvata 4229 2020 9310 Nocardiopsaceae 83676 family 0 7 124 1 genus 7963 Nocardiopsis 2013 1 0 4 126 1 0 2014 3347 Nocardiopsis dassonvillei species species 280236 Nocardiopsis gilva 2485 1 0 0 1 2005 Nocardiopsis alba 53437 species 1 2 4 0 genus 83677 1223 Thermobifida 0 1 species 1219 Thermobifida fusca 2021 family Streptosporangiaceae 9995 2004 1 0 108 5 0 2 51 1 6056 Nonomuraea 83681 genus 0 1 no rank 6005 2593643 1909395 Nonomuraea sp. ATCC 55076 6005 species 1 0 genus 3831 Streptosporangium 2000 1 0 2 23 2001 Streptosporangium roseum 3808 species 1 0 1 0 11 21 order 2990 Candidatus Nanopelagicales 2039638 0 10 2969 2162846 family 2039639 540 genus 3 0 1 0 1884916 187 Candidatus Nanopelagicus abundans species 1 0 species 1884915 200 Candidatus Nanopelagicus hibericus 0 1 153 Candidatus Nanopelagicus limnes 1884634 species 0 7 21 1 2429 Candidatus Planktophila 622681 genus 0 1 Candidatus Planktophila limnetica 253 573600 species 0 1 species 635 Candidatus Planktophila lacus 1884913 species 263 Candidatus Planktophila sulfonica 1884904 0 1 1884905 472 Candidatus Planktophila versatilis species 1 0 1 0 1884907 320 Candidatus Planktophila vernalis species 0 1 Candidatus Planktophila dulcis 465 1884914 species 51 6 0 1 84995 Rubrobacteria 3461 class 1 0 98 5 order Rubrobacterales 3410 84996 0 16 4 1 Rubrobacteraceae 3312 84997 family genus 3296 Rubrobacter 42255 1 0 3 117 species 2467 Rubrobacter xylanophilus 49319 0 1 1 0 species 42256 Rubrobacter radiotolerans 712 Thermoleophilia 2562 1497346 class 0 5 5 1 4 136 0 1 588673 2557 Solirubrobacterales order 320583 2421 Conexibacteraceae family 3 26 0 1 1 2 101 0 genus 191494 2395 Conexibacter 191495 2294 Conexibacter woesei species 1 0 class Coriobacteriia 156415 84998 1 0 1153 33 0 14 891 1 50251 Coriobacteriales 84999 order 0 7 399 1 25002 Atopobiaceae 1643824 family genus 3 Atopobium 1380 0 1 genus 22190 Olsenella 133925 1 0 4 179 1 0 1805478 10753 Olsenella sp. Marseille-P2300 species 2638792 4282 no rank 1 0 species 712411 4282 Olsenella sp. oral taxon 807 1 0 1 0 133926 Olsenella uli 6976 species 1 0 genus 2767353 2410 0 1 2410 Atopobium parvulum 1382 species 1 6 1171 0 family 84107 24358 Coriobacteriaceae 0 1 5491 84113 no rank 1 0 1531429 5491 Coriobacteriaceae bacterium 68-1-3 species genus 33870 2919 Coriobacterium 1 2 12 0 0 1 species 2907 Coriobacterium glomerans 33871 1 0 90 2 genus Collinsella 14777 102106 species 74426 Collinsella aerofaciens 14687 1 0 order 1643822 105011 Eggerthellales 1 18 1232 0 103779 Eggerthellaceae 1643826 family 0 17 17488 1 84108 Slackia 7764 genus 40 2 0 1 1 0 84110 Slackia heliotrinireducens 7724 species 4432 Denitrobacterium 79603 genus 0 2 3 1 4429 Denitrobacterium detoxificans 79604 species 0 1 34060 Eggerthella 84111 genus 0 3 299 1 1 0 species 84112 Eggerthella lenta 29724 no rank 4037 2648737 0 1 1 0 species 502558 Eggerthella sp. YY7918 4037 1 0 2 13 genus 10641 Adlercreutzia 447020 0 1 species 10628 Adlercreutzia equolifaciens 446660 644652 Gordonibacter 26074 genus 158 3 0 1 species Gordonibacter massiliensis 11121 1841863 0 1 1 0 1335613 14795 Gordonibacter urolithinfaciens species 1 2 4 0 genus 84162 1069 Cryptobacterium species 84163 1065 Cryptobacterium curtum 1 0 1 6 2 0 genus 1981050 Phoenicibacter 2251 species Phoenicibacter massiliensis 2245 1944646 0 1 629 1859062 no rank 0 2 0 2 57 1 629 Thermobaculum 262406 genus 0 1 species Thermobaculum terrenum 572 166501 0 148 clade 90099 1798711 phylum 1117 90099 Cyanobacteria 1 148 91 0 1 0 57 505 order 41077 Synechococcales 1890424 0 6 37 1 3820 Leptolyngbyaceae 1890438 family 5 30 0 1 47251 3783 Leptolyngbya genus 0 3 2946 2650499 no rank 1 0 1752064 Leptolyngbya sp. NIES-3755 726 species 0 1 species 1827 Leptolyngbya sp. O-77 1080068 1 0 species 111781 Leptolyngbya sp. PCC 7376 393 species 807 Leptolyngbya boryana 1184 0 1 family 1215 1890429 0 2 0 9 2 1 Acaryochloris 1215 155977 genus 0 1 species 1206 Acaryochloris marina 155978 1 3 1 0 family 1890436 578 Pseudanabaenaceae 1152 577 Pseudanabaena genus 2 7 0 1 no rank 570 2593292 0 1 species 82654 Pseudanabaena sp. PCC 7367 570 1 0 family 2303730 801 2 0 genus 170610 Halomicronema 801 1 17 2 0 1 0 species 1209493 784 Halomicronema hongdechloris 0 4 5 1 Prochloraceae 3608 1213 family Prochlorococcus 3604 1218 genus 0 7 4 1 2627481 838 no rank 2 0 298 Prochlorococcus sp. MIT 0604 1501268 species 0 1 1501269 Prochlorococcus sp. MIT 0801 540 species 1 0 species 2759 Prochlorococcus marinus 1219 0 1 1 0 86 33 family Synechococcaceae 28495 1890426 0 3 48 1 6439 Cyanobium 167375 genus 0 1 species 3050 Cyanobium gracile 59930 1 0 no rank 2627006 3341 species 3341 Cyanobium sp. NIES-981 1851505 0 1 6 2 0 1 13034 Dactylococcopsis 652 genus species 646 Dactylococcopsis salina 292566 0 1 1 26 394 0 genus 1129 20833 Synechococcus no rank 2626047 19005 23 0 Synechococcus sp. PCC 7003 551 374981 species 0 1 species 374982 Synechococcus sp. PCC 73109 368 1 0 0 1 species 1065 Synechococcus sp. KORDI-52 585425 1 0 321327 Synechococcus sp. JA-3-3Ab 2040 species species 32051 1024 Synechococcus sp. WH 7803 1 0 84588 1018 Synechococcus sp. WH 8102 species 1 0 0 1 Synechococcus sp. PCC 7117 289 195498 species 1 0 110662 973 Synechococcus sp. CC9605 species 1 0 species 585423 Synechococcus sp. KORDI-49 1081 0 1 species Synechococcus sp. SynAce01 1101 1916956 species 29410 Synechococcus sp. WH 8103 901 1 0 1173263 Synechococcus sp. PCC 7502 978 species 1 0 species 400 Synechococcus sp. PCC 8807 195248 0 1 0 1 434 Synechococcus sp. PCC 6312 195253 species species Synechococcus sp. JA-2-3B'a(2-13) 1307 321332 0 1 0 1 species 380 Synechococcus sp. PCC 7002 32049 429 Synechococcus sp. CC9902 316279 species 0 1 1 0 316278 1266 Synechococcus sp. RCC307 species 1 0 species 1827144 Synechococcus sp. NIES-970 408 0 1 940 Synechococcus sp. UTEX 2973 1350461 species Synechococcus sp. CC9311 494 64471 species 0 1 species 766 Synechococcus sp. KORDI-100 1280380 0 1 792 Synechococcus sp. WH 8109 166314 species 0 1 species 32046 896 Synechococcus elongatus 1 0 0 1 Synechococcus lividus 538 33070 species 485 146785 genus 0 1 species 485 Thermosynechococcus elongatus 146786 0 1 4 5 0 1 1890428 Merismopediaceae 2055 family 1142 2051 Synechocystis genus 4 30 0 1 no rank 2640012 2021 3 0 species 1148 Synechocystis sp. PCC 6803 694 1 0 0 1 species 694 Synechocystis sp. IPPAS B-1465 2116702 species 1147 Synechocystis sp. PCC 6714 633 1 0 6 0 order 52604 2292 1890500 Hyellaceae 600 family 3 2 0 1 1 0 genus 44474 597 1 0 54308 597 Pleurocapsa minor species 1 0 6 4 family Dermocarpellaceae 1692 1890498 6 3 0 1 102115 Stanieria 1686 genus species 922 Stanieria cyanosphaera 102116 0 1 no rank 758 2642663 0 1 1 0 species 1807358 758 Stanieria sp. NIES-3757 6 46 0 1 307596 3537 Gloeobacteria class 1 0 72 5 order Gloeobacterales 3491 307595 3419 Gloeobacteraceae 1890422 family 0 4 31 1 1 0 3 84 genus 3388 Gloeobacter 33071 0 1 Gloeobacter violaceus 1753 33072 species 1 0 1416614 Gloeobacter kilaueensis 1551 species subclass 21351 1301283 0 43 1150 Oscillatoriales 8105 order 85 20 0 1 1892249 Cyanothecaceae 991 family 48 3 0 1 2 70 0 1 43988 943 Cyanothece genus no rank 873 2649277 0 1 395961 Cyanothece sp. PCC 7425 873 species 1 0 family Gomontiellaceae 758 1892255 1 0 5 2 1 0 241421 753 genus 241425 Crinalium epipsammum 753 species 1 0 1 0 16 3 family Coleofasciculaceae 1734 1892251 Geitlerinema 1718 63132 genus 0 9 2 1 0 1 1709 2648775 no rank 0 1 Geitlerinema sp. PCC 7407 1709 1173025 species family Oscillatoriaceae 2606 1892254 1 0 5 6 0 3 4 1 2044 Oscillatoria 1158 genus species 118323 1206 Oscillatoria acuminata 1 0 species 482564 834 Oscillatoria nigro-viridis 1 0 genus 557 Moorea 1155738 1 0 2 9 0 1 548 Moorea producens 1155739 species 1 4 5 0 family 1892252 Microcoleaceae 1931 genus 1205 1106 Trichodesmium 1 2 3 0 1206 1103 Trichodesmium erythraeum species 1 0 1 18 2 0 genus 44471 Microcoleus 821 803 2642155 no rank 0 1 0 1 species Microcoleus sp. PCC 7113 803 1173027 order 13246 Chroococcales 1118 1 0 23 4 family 1890464 3722 Chroococcaceae 1 7 7 0 1 0 2 17 genus 455 Gloeocapsa 102231 no rank 2623012 438 1 0 1 0 species 1173026 Gloeocapsa sp. PCC 7428 438 genus 751 268175 0 1 no rank 2648896 751 1 0 0 1 species 751 Chondrocystis sp. NIES-4102 2005460 10 3 0 1 669357 Geminocystis 2509 genus 2 0 2625037 2499 no rank 1 0 species 1615909 1182 Geminocystis sp. NIES-3708 1617448 Geminocystis sp. NIES-3709 1317 species 1 0 Aphanothecaceae 5273 1890450 family 0 2 8 1 0 1 genus 492 1453359 0 1 492 Candidatus Atelocyanobacterium thalassa 713887 species 1 0 263510 647 genus species 647 2546360 0 1 1 0 43989 647 Cyanothece sp. ATCC 51142 strain no rank 570 92682 0 1 1 0 genus 76023 570 1 0 no rank 2632878 570 570 Halothece sp. PCC 7418 65093 species 0 1 2 0 genus 2546365 1660 species 2546366 1660 2 0 strain 395962 Cyanothece sp. PCC 8802 872 1 0 strain 788 Cyanothece sp. PCC 8801 41431 0 1 genus 28070 1902 2 0 916 2546359 species 0 1 1 0 497965 Cyanothece sp. PCC 7822 916 strain 1 0 species 2546356 986 0 1 Cyanothece sp. PCC 7424 986 65393 strain 10 4 0 1 1890449 Microcystaceae 2033 family 1 0 6 3 genus Microcystis 2023 1125 no rank 578 2643300 0 1 0 1 Microcystis sp. MC19 578 1967666 species species 1126 Microcystis aeruginosa 1439 1 0 3 3 0 1 1890452 2214 Cyanobacteriaceae family genus 102234 2211 Cyanobacterium 1 2 5 0 species 379064 2206 Cyanobacterium aponinum 1 0 461 1983111 no rank 0 1 species cyanobacterium endosymbiont of Epithemia turgida 461 718217 0 1 1161 Nostocales 20725 order 22 32 0 1 family Nostocaceae 12102 1162 1 0 24 17 2 0 genus 264688 1396 species 1164 Trichormus azollae 777 1 0 species 264691 619 Trichormus variabilis 1 0 0 46 10 1 Nostoc 7376 1177 genus 0 1 species Nostoc flagelliforme 1542 1306274 1 0 species 272131 896 Nostoc punctiforme 0 7 4892 2593658 no rank 1 0 1618022 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 708 species 914 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 species 0 1 0 1 species Nostoc sp. NIES-3756 794 1751286 1 0 species 317936 Nostoc sp. PCC 7107 411 species 1869241 590 Nostoc sp. CENA543 1 0 0 1 613 Nostoc sp. PCC 7524 28072 species 0 1 species 862 Nostoc sp. PCC 7120 103690 0 4 3 1 3306 Anabaena 1163 genus no rank 2619674 2293 2 0 1 0 1647413 Anabaena sp. WA102 1231 species 0 1 species 1062 Anabaena sp. 90 46234 1165 Anabaena cylindrica 1010 species 1 0 family Rivulariaceae 1571 1185 1 0 47 3 genus Rivularia 1524 373984 1 0 4 2 0 1 no rank 1520 2676603 Rivularia sp. PCC 7116 1520 373994 species 0 1 2 45 0 1 1892263 949 Hapalosiphonaceae family 1 0 1190 904 genus no rank 904 494603 0 1 species Fischerella sp. NIES-3754 904 1752063 0 1 2661849 5438 family 8 0 genus 1186 5438 Calothrix 1 8 40 0 species 733 Calothrix parietina 32054 0 1 no rank 2619626 4665 6 0 1 0 species 1337936 Calothrix sp. 336/3 919 0 1 species 1287 Calothrix sp. NIES-4071 2005469 484 Calothrix sp. NIES-3974 2005462 species 0 1 506 Calothrix sp. PCC 7507 99598 species 0 1 0 1 Calothrix sp. NIES-4101 890 2005461 species 1954171 579 Calothrix sp. NIES-2098 species 1 0 1219117 643 no rank 1 0 species Nostocales cyanobacterium HT-58-2 643 1940762 0 1 0 2 order 565 1890505 2 0 family 1890528 565 565 Chroococcidiopsis 54298 genus 0 2 17 1 54299 548 Chroococcidiopsis thermalis species 1 0 1068 67819 phylum 0 5 1 0 4 5 class Fimbriimonadia 1068 1663419 1 0 10 4 order Fimbriimonadales 1064 1663425 1 0 3 26 family 1054 Fimbriimonadaceae 1663426 1028 Fimbriimonas 1005038 genus 0 2 6 1 1022 Fimbriimonas ginsengisoli 1005039 species 0 1 1239 Firmicutes 22566950 phylum 345 726 0 1 class 186801 Clostridia 21357533 1 640 223 0 1 25347 165 0 order 186802 Clostridiales 21302174 74549 2304686 family 0 12 236752 1787 Fastidiosipila genus 2 11 0 1 species 236753 1776 Fastidiosipila sanguinis 1 0 12512 2304692 genus 0 3 0 1 species Ruminiclostridium thermocellum 4764 1515 2812 Herbivorax saccincola 1677857 species 0 1 species 4936 [Clostridium] clariflavum 288965 0 1 1 0 no rank 2305130 39553 Ruminiclostridium sp. KB18 39553 1834198 species 0 1 0 1 genus 4393 2304691 1 0 1510 [Clostridium] stercorarium 4393 species 1 0 4 2 genus Mageeibacillus 5600 1637257 0 1 species Mageeibacillus indolicus 5596 884684 1 0 2 717 genus 6308 Ruminiclostridium 1508657 1521 [Clostridium] cellulolyticum 5591 species 1 0 4396 2304693 genus 0 1 1 0 84032 [Clostridium] thermosuccinogenes 4396 species 1 0 158 3 family Christensenellaceae 56767 990719 1 2 392 0 genus 990721 56609 Christensenella 0 1 Christensenella massiliensis 56217 1805714 species 10 0 538999 235659 no rank 4206 Clostridiales Family XVII. Incertae Sedis 539000 family 0 3 13 1 genus Thermaerobacter 4193 73918 1 0 23 2 1 0 species 73919 Thermaerobacter marianensis 4170 62 4 0 1 543314 Clostridiales Family XIII. Incertae Sedis 11316 family species 7212 [Eubacterium] sulci 143393 0 1 genus 4042 Mogibacterium 86331 1 0 2 21 species 114527 4021 Mogibacterium diversum 1 0 1 0 genus 2717089 136625 species Mordavella sp. Marseille-P3756 136625 2086584 0 1 1392389 83512 Intestinimonas genus 2 515 0 1 species 1297617 82997 Intestinimonas butyriciproducens 1 0 family Ruminococcaceae 9797381 541000 1 0 1296 13 0 1 4 Herbivorax 1890281 genus 3553972 Ruminococcus 1263 genus 0 3 178 1 1 0 species 1264 Ruminococcus albus 20240 0 1 species Ruminococcus bicirculans 3533554 1160721 19248 2305133 no rank 0 1 species Ruminococcaceae bacterium CPB6 19248 1572656 0 1 20743 Ethanoligenens 253238 genus 0 2 16 1 1 0 253239 20727 Ethanoligenens harbinense species 160016 Flavonifractor 946234 genus 0 2 215 1 Flavonifractor plautii 159801 292800 species 0 1 genus Faecalibacterium 6035606 216851 1 0 1236 2 species 6034370 Faecalibacterium prausnitzii 853 0 1 no rank 6496 552397 0 1 29343 6496 [Clostridium] cellulosi species 1 0 1 3 10 0 family 216572 41865 Oscillospiraceae 459786 Oscillibacter 41855 genus 106 2 0 1 1 0 351091 Oscillibacter valericigenes 41749 species 31984 5501 Heliobacteriaceae family 3 61 0 1 0 86 2 1 Heliobacterium 5440 2697 genus 1 0 species 35701 5354 Heliobacterium modesticaldum 1 5 55 0 family 186806 33043 Eubacteriaceae genus Eubacterium 29460 1730 1 0 1615 2 1 0 species 1736 Eubacterium limosum 27845 Acetobacterium 3528 33951 genus 0 4 2 1 0 1 3524 Acetobacterium woodii 33952 species 1 27 3 0 family 543349 Symbiobacteriaceae 5859 Symbiobacterium 5832 2733 genus 0 39 2 1 1 0 species 2734 5793 Symbiobacterium thermophilum family Syntrophomonadaceae 2812 68298 1 0 1 4 genus 129001 1000 1 0 Syntrophothermus lipocalidus 1000 86170 species 0 1 1 0 2 1 genus 1811 Syntrophomonas 862 species Syntrophomonas wolfei 1810 863 0 1 family 186804 292765 Peptostreptococcaceae 1 12 1358 0 2 6 0 1 186831 2520 Acetoanaerobium genus 1 0 1511 Acetoanaerobium sticklandii 2514 species 1862 1411023 no rank 0 1 0 1 species Peptostreptococcaceae bacterium oral taxon 929 1862 2081703 0 2 2 1 4683 Paeniclostridium 1849828 genus 0 1 species Paeniclostridium sordellii 4681 1505 1 0 566 2 genus Clostridioides 275699 1870884 0 1 species Clostridioides difficile 275133 1496 12 2 0 1 44259 Filifactor 3557 genus 0 1 species Filifactor alocis 3545 143361 1481960 Peptoclostridium 3086 genus 10 2 0 1 species 1731 3076 Peptoclostridium acidaminophilum 1 0 0 41 469 1 212323 Clostridiaceae 31979 family genus 5791 Alkaliphilus 114627 1 0 3 18 1 0 species 461876 2558 Alkaliphilus oremlandii 1 0 208226 Alkaliphilus metalliredigens 3215 species 0 2 36 1 5651 Geosporobacter 390805 genus 1424294 5615 Geosporobacter ferrireducens species 1 0 1337 30 0 1 1485 Clostridium 196127 genus 1 0 species 1538 Clostridium ljungdahlii 3187 54070 2614128 no rank 0 2 species 1042156 48859 Clostridium sp. SY8519 1 0 755731 5211 Clostridium sp. BNL1100 species 1 0 0 1 species 5641 Clostridium kluyveri 1534 1 0 species 1548 4371 Clostridium scatologenes 0 1 species 2993 Clostridium formicaceticum 1497 1520 Clostridium beijerinckii 8166 species 1 0 1 0 394958 Clostridium taeniosporum 3857 species species 1501 7695 Clostridium pasteurianum 1 0 4590 Clostridium bornimense 1216932 species 0 1 species Clostridium tetani 5159 1513 0 1 1502 Clostridium perfringens 8459 species 1 0 species 1509 2626 Clostridium sporogenes 1 0 0 1 species Clostridium saccharobutylicum 4619 169679 7859 Clostridium butyricum 1492 species 0 1 238834 3630 Clostridium estertheticum species 1 0 84022 3274 Clostridium aceticum species 1 0 species Clostridium carboxidivorans 4520 217159 0 1 species Clostridium baratii 6246 1561 0 1 species 19827 Clostridium botulinum 1491 0 1 1 0 84023 Clostridium autoethanogenum 3415 species species 29341 3004 Clostridium argentinense 1 0 species 46867 2884 Clostridium chauvoei 1 0 3408 Clostridium tyrobutyricum 1519 species 0 1 0 1 5100 Clostridium cellulovorans 1493 species 4129 Clostridium cochlearium 1494 species 0 1 1 0 1542 2647 Clostridium novyi species 1488 Clostridium acetobutylicum 2637 species 1 0 species 6777 Clostridium saccharoperbutylacetonicum 36745 0 1 0 1 423 Mordavella 1981033 genus 1 0 46 4 genus Candidatus Arthromitus 3862 49082 no rank 2638829 3816 3 0 species 1129 Candidatus Arthromitus sp. SFB-mouse 49118 0 1 1041504 1590 Candidatus Arthromitus sp. SFB-rat-Yit species 1 0 species 1508644 Candidatus Arthromitus sp. SFB-mouse-NL 1097 1 0 0 2562 27 1 Lachnospiraceae 10463890 186803 family 1 0 2 12 genus 11111 Herbinix 1663717 1679721 11099 Herbinix luporum species 1 0 332 2 0 1 207244 Anaerostipes 418497 genus species Anaerostipes hadrus 418165 649756 0 1 0 1 288969 2569097 genus species 39488 [Eubacterium] hallii 288969 1 0 genus 841 Roseburia 987294 1 61 2 0 species 301301 987233 Roseburia hominis 1 0 genus 275632 28050 0 1 0 1 [Eubacterium] eligens 275632 39485 species 6295 Anaerotignum 2039240 genus 0 2 6 1 Anaerotignum propionicum 6289 28446 species 0 1 1 0 genus 2719313 312971 208479 312971 [Clostridium] bolteae species 1 0 172 3 0 1 830 Butyrivibrio 42323 genus 1 0 species 185008 Butyrivibrio hungatei 20925 species 43305 Butyrivibrio proteoclasticus 21226 1 0 1 0 330 3 genus Blautia 275576 572511 0 1 Blautia hansenii 178161 1322 species 2648079 97085 no rank 1 0 0 1 species 97085 Blautia sp. YL58 1796616 genus 54310 2719231 0 1 species 84030 [Clostridium] saccharolyticum 54310 1 0 0 2 7550532 186928 no rank species 39491 7518185 [Eubacterium] rectale 1 0 species 712991 32347 Lachnospiraceae bacterium oral taxon 500 1 0 1230 4 0 1 1506553 Lachnoclostridium 230048 genus 0 1 no rank 91112 2608895 1834196 Lachnoclostridium sp. YL32 91112 species 1 0 66219 17795 Lachnoclostridium phytofermentans species 1 0 species 1871021 119911 Lachnoclostridium phocaeense 1 0 genus 698776 7770 Cellulosilyticum 1 2 3 0 29360 Cellulosilyticum lentocellum 7767 species 1 0 28 265 0 1 186807 54413 Peptococcaceae family 56112 9048 Dehalobacter genus 4 242 0 1 no rank 6161 2635733 0 2 0 1 Dehalobacter sp. CF 3171 1131462 species 1147129 Dehalobacter sp. DCA 2990 species 1 0 0 1 species Dehalobacter restrictus 2645 55583 0 1 2287 2282742 genus 58138 2287 Desulfotomaculum acetoxidans species 1 0 159 5 0 1 1562 Desulfotomaculum 9040 genus Desulfotomaculum nigrificans 2160 1565 species 0 1 1 0 species 1833852 2171 Desulfotomaculum ferrireducens 59610 Desulfotomaculum reducens 1200 species 1 0 0 1 3350 Desulfotomaculum ruminis 1564 species 1 0 1 2 genus Thermincola 2252 278993 species 863643 2251 Thermincola potens 1 0 0 205 4 1 Desulfosporosinus 6815 79206 genus 885581 2485 Desulfosporosinus acidiphilus species 1 0 2169 Desulfosporosinus orientis 1563 species 0 1 0 1 Desulfosporosinus meridiei 1956 79209 species 1 0 23 2 genus Candidatus Desulforudis 2637 471826 0 1 Candidatus Desulforudis audaxviator 2614 471827 species 12128 Desulfitobacterium 36853 genus 0 5 105 1 0 1 species 1779 Desulfitobacterium metallireducens 142877 Desulfitobacterium hafniense 4545 49338 species 0 1 2708 Desulfitobacterium dichloroeliminans 233055 species 0 1 Desulfitobacterium dehalogenans 2991 36854 species 0 1 0 1 genus 2579 51196 species 2579 Syntrophobotulus glycolicus 51197 0 1 Dehalobacterium 3954 51514 genus 0 13 2 1 species 51515 Dehalobacterium formicoaceticum 3941 1 0 1 0 genus 2282740 3408 0 1 species Desulfotomaculum gibsoniae 3408 102134 0 4 2843 2770089 order 0 2 family 1757 2770092 1 4 2 0 genus 499228 Tepidanaerobacter 1757 0 1 Tepidanaerobacter acetatoxydans 1753 499229 species 2 0 2770093 1086 family 1 2 7 0 genus 291988 1086 Thermosediminibacter 0 1 Thermosediminibacter oceani 1079 291990 species 0 39 108 1 41596 Thermoanaerobacterales 68295 order family Thermoanaerobacteraceae 23352 186814 1 0 46 20 6 2 0 1 129957 Carboxydothermus 1743 genus 0 1 1737 Carboxydothermus hydrogenoformans 129958 species 0 405 9 1 Thermoanaerobacter 14621 1754 genus 2118 Thermoanaerobacter brockii 29323 species 0 1 Thermoanaerobacter kivui 1222 2325 species 0 1 1 0 496866 Thermoanaerobacter pseudethanolicus 2118 species 1 0 species 46354 Thermoanaerobacter wiegelii 1752 1598 Thermoanaerobacter mathranii 583357 species 0 1 0 2 no rank 3701 2636821 1 0 573062 1753 Thermoanaerobacter sp. X513 species 0 1 Thermoanaerobacter sp. X514 1948 399726 species Thermoanaerobacter italicus 1707 108150 species 0 1 Caldanaerobacter 1835 249529 genus 0 1 2 1 0 1 species Caldanaerobacter subterraneus 1834 911092 0 4 no rank 3767 42857 44260 Moorella 2457 genus 11 2 0 1 1 0 species 1525 2446 Moorella thermoacetica genus 42837 Ammonifex 1310 1 7 2 0 1 0 42838 Ammonifex degensii 1303 species 1340 Thermacetogenium 140458 genus 0 2 17 1 0 1 species Thermacetogenium phaeum 1323 85874 68 13 0 1 543371 Thermoanaerobacterales Family III. Incertae Sedis 16176 family 1 9 193 0 genus 44000 10963 Caldicellulosiruptor 0 1 1106 Caldicellulosiruptor lactoaceticus 52766 species 0 1 1153 Caldicellulosiruptor owensensis 55205 species 1 0 52765 1251 Caldicellulosiruptor kristjanssonii species Caldicellulosiruptor hydrothermalis 1430 413888 species 0 1 Caldicellulosiruptor bescii 1600 31899 species 0 1 1 0 44001 Caldicellulosiruptor saccharolyticus 1536 species 0 1 species 1417 Caldicellulosiruptor kronotskyensis 413889 species 717609 1277 Caldicellulosiruptor obsidiansis 1 0 1 7 3 0 genus 28895 Thermoanaerobacterium 5145 species 29329 Thermoanaerobacterium xylanolyticum 2064 1 0 1 0 species 1517 Thermoanaerobacterium thermosaccharolyticum 3074 8 3 0 1 543372 Thermoanaerobacterales Family IV. Incertae Sedis 1659 family 1 0 2 4 genus 1651 Mahella 252965 252966 1647 Mahella australiensis species 1 0 1 2 2 0 family 227387 Thermodesulfobiaceae 301 1 0 genus 227388 299 Thermodesulfobium narugense 299 184064 species 0 1 0 10 10 1 8826 Halanaerobiales 53433 order family 53434 3972 Halobacteroidaceae 1 4 11 0 1647 Halobacteroides 42417 genus 0 2 3 1 1644 Halobacteroides halobius 42422 species 0 1 28186 2314 genus 1 0 0 1 species 2314 Acetohalobium arabaticum 28187 1 5 6 0 family 972 4844 Halanaerobiaceae genus Halanaerobium 3417 2330 1 0 43 3 1 0 2331 Halanaerobium praevalens 1938 species 1 0 species 656519 Halanaerobium hydrogeniformans 1436 1421 32636 genus 0 1 1 0 31909 Halothermothrix orenii 1421 species 0 4 8 1 1454 Natranaerobiales 485256 order 1 3 6 0 family 485255 1446 Natranaerobiaceae genus 1440 Natranaerobius 375928 1 0 2 97 0 1 species 1343 Natranaerobius thermophilus 375929 84086 1515 no rank 1 0 species endosymbiont 'TC1' of Trimyema compressum 1515 243899 0 1 class Negativicutes 175074 909932 1 0 91 31 1 43 5 0 order 1843488 Acidaminococcales 39127 66 4 0 1 909930 Acidaminococcaceae 39084 family 1 3 221 0 genus 904 39018 Acidaminococcus species 187327 Acidaminococcus intestini 28576 1 0 905 Acidaminococcus fermentans 10221 species 1 0 Selenomonadales 44980 909929 order 0 163 14 1 1 8 4 0 family 1843490 Sporomusaceae 5923 0 3 54 1 5915 Pelosinus 365348 genus 3361 2629460 no rank 0 1 0 1 species 3361 Pelosinus sp. UFO1 484770 Pelosinus fermentans 2500 365349 species 0 1 family Selenomonadaceae 38894 1843491 1 0 542 9 genus 34042 Selenomonas 970 1 0 6 304 no rank 14619 2637378 0 3 712538 4793 Selenomonas sp. oral taxon 478 species 1 0 1 0 1884263 Selenomonas sp. oral taxon 920 3948 species species 713030 5878 Selenomonas sp. oral taxon 136 1 0 0 1 species 11942 Selenomonas ruminantium 971 0 1 species Selenomonas sputigena 7177 69823 1 0 15 2 genus Megamonas 4310 158846 0 1 Megamonas hypermegale 4295 158847 species order 1843489 90876 Veillonellales 1 11 1459 0 89417 Veillonellaceae 31977 family 0 10 1618 1 genus Megasphaera 15575 906 1 0 488 2 907 Megasphaera elsdenii 15087 species 1 0 20286 Veillonella 29465 genus 0 3 128 1 1 0 248315 4293 Veillonella rodentium species species 15865 Veillonella parvula 29466 0 1 2 81 0 1 39948 40402 Dialister genus 40321 Dialister pneumosintes 39950 species 0 1 1 4 2 0 genus 909928 Negativicoccus 11536 0 1 species Negativicoccus massiliensis 11532 1702287 class 91061 Bacilli 941241 1 583 434 0 order 483174 Bacillales 1385 1 0 268 1275 0 9 43 1 11706 Listeriaceae 186820 family 1 6 129 0 genus 1637 10114 Listeria 0 1 1302 Listeria seeligeri 1640 species species Listeria monocytogenes 3934 1639 0 1 Listeria innocua 1199 1642 species 0 1 1 0 1643 1563 Listeria welshimeri species 1638 Listeria ivanovii 1987 species 1 0 1 0 1 2 genus Brochothrix 1549 2755 1 0 2756 1548 Brochothrix thermosphacta species 0 9 64 1 11172 Alicyclobacillaceae 186823 family 1 0 37 2 genus Alicyclobacillus 3097 29330 3060 Alicyclobacillus acidocaldarius 405212 species 0 1 5418 Tumebacillus 432330 genus 0 3 30 1 0 1 species 2150 Tumebacillus algifaecis 1214604 1903704 3238 Tumebacillus avium species 1 0 1 0 104 3 genus Kyrpidia 2593 1129704 0 1 species Kyrpidia tusciae 1417 33943 species Kyrpidia sp. EA-1 1072 2055160 0 1 1 0 42 5696 family 60652 Staphylococcaceae 90964 0 7 2 1 Auricoccucs 894 2005363 genus 887 Auricoccus indicus 1849491 species 0 1 5163 Macrococcus 69965 genus 0 4 34 1 species Macrococcus canis 1127 1855823 0 1 1 0 no rank 2619255 1211 0 1 species 1211 Macrococcus sp. IME1552 1898474 1 0 species 69966 2791 Macrococcus caseolyticus 17 2 0 1 45669 Salinicoccus 1610 genus 1 0 species 407035 Salinicoccus halodurans 1593 1 0 33 1858 genus 47289 Staphylococcus 1279 species 70255 1573 Staphylococcus condimenti 1 0 985002 Staphylococcus argenteus 1097 species 1 0 species 29388 1266 Staphylococcus capitis 1 0 species 61015 893 Staphylococcus succinus 1 0 species 45972 Staphylococcus pasteuri 2617 1 0 1165 Staphylococcus sciuri 1296 species 0 1 0 1 species Staphylococcus felis 1035 46127 1 0 species 1286 Staphylococcus simulans 1242 91994 958 no rank 1 0 1 0 species 1715860 958 Staphylococcus sp. AntiMn-1 1 0 1294 678 Staphylococcus muscae species 1 0 29385 1171 Staphylococcus saprophyticus species 0 1 species Staphylococcus haemolyticus 966 1283 0 1 species 1244 Staphylococcus hominis 1290 1 0 643214 1508 Staphylococcus stepanovicii species 1 0 species 985762 Staphylococcus agnetis 629 283734 2207 Staphylococcus pseudintermedius species 1 0 0 1 2464 Staphylococcus epidermidis 1282 species 0 1 1419 Staphylococcus carnosus 1281 species 1 0 29382 1352 Staphylococcus cohnii species 1 0 species 155085 966 Staphylococcus lutrae 1 0 species 1292 1233 Staphylococcus warneri species Staphylococcus aureus 5790 1280 0 1 28035 1056 Staphylococcus lugdunensis species 1 0 1 0 170573 767 Staphylococcus pettenkoferi species 1 0 308354 Staphylococcus simiae 1341 species 1 0 214473 Staphylococcus nepalensis 1255 species 70258 1286 Staphylococcus piscifermentans species 1 0 2064 Staphylococcus xylosus 1288 species 0 1 29384 Staphylococcus kloosii 920 species 1 0 1 0 species 1295 Staphylococcus schleiferi 1317 0 1 species 1355 Staphylococcus equorum 246432 species Staphylococcus hyicus 597 1284 0 1 11 2 0 1 186821 Sporolactobacillaceae 2009 family 1 0 no rank 663587 1998 1 0 species 85683 [Bacillus] selenitireducens 1998 Bacillaceae 214177 186817 family 0 874 119 1 genus 1329200 Fictibacillus 3393 1 20 3 0 species Fictibacillus arsenicus 1553 255247 0 1 species Fictibacillus phosphorivorans 1820 1221500 0 1 0 2 genus 4511 2675229 1 0 species 264697 1767 Bacillus muralis 0 1 species Bacillus simplex 2744 1478 0 3 3 1 2925 Halobacillus 45667 genus 1 0 species 1570 1350 Halobacillus halophilus 0 1 species 1572 Halobacillus mangrovi 402384 1 0 2 3 genus 1721 Lentibacillus 175304 0 1 species 1718 Lentibacillus amyloliquefaciens 1472767 genus 9542 Lysinibacillus 400634 1 0 5 164 0 1 1497 Lysinibacillus fusiformis 28031 species 0 1 species Lysinibacillus varians 1976 1145276 1 0 species 1421 Lysinibacillus sphaericus 4219 1 0 2636778 1686 no rank 1 0 species 2072025 Lysinibacillus sp. YS11 1686 48 2 0 1 459532 Terribacillus 2200 genus 1 0 species 586416 2152 Terribacillus aidingensis 0 1 1864 1055323 genus 1 0 33936 1864 Aeribacillus pallidus species 1 0 58 8284 genus 134438 Bacillus 1386 1426 Bacillus flexus 86664 species 0 1 0 19 19224 185979 no rank 1941347 725 Bacillus sp. 275 species 1 0 0 1 species Bacillus sp. Lzh-5 207 2049935 species 635 Bacillus sp. JS 1127744 0 1 1774743 1321 Bacillus sp. SDLI1 species 1 0 1 0 species 1565991 1962 Bacillus sp. X1(2014) 1827146 1885 Bacillus sp. IHB B 7164 species 1 0 species 296 Bacillus sp. LM 4-2 1628753 0 1 species 1570330 Bacillus sp. BH072 285 1 0 Bacillus sp. WP8 1353 756828 species 0 1 1446792 755 Bacillus sp. Pc3 species 1 0 species 2009331 465 Bacillus sp. MD-5 1 0 1791 Bacillus sp. 1NLA3E 666686 species 0 1 0 1 species 1142 Bacillus sp. FJAT-14266 1837130 0 1 species 557 Bacillus sp. YP1 1574141 species 1462 Bacillus sp. OxB-1 98228 0 1 0 1 species Bacillus sp. H15-1 1721 1856406 species 563169 574 Bacillus sp. SJ-10 1 0 0 1 species 1721 Bacillus sp. 1s-1 2026248 0 1 Bacillus sp. (in: Bacteria) 367 1409 species 0 1 Bacillus smithii 1436 1479 species 1 0 species group 1792192 1332 0 1 Bacillus altitudinis 1332 293387 species 0 10 species group 39888 86661 species 12236 Bacillus cereus 1396 0 1 1 0 species 1405 4821 Bacillus mycoides 0 1 Bacillus cytotoxicus 1690 580165 species 0 1 species 1432 Bacillus bombysepticus 658666 1 0 species 1392 1124 Bacillus anthracis 0 3 5318 2750818 no rank species Bacillus sp. ABP14 1605 1892404 0 1 0 1 Bacillus sp. HBCD-sjtu 2150 2053832 species species 1563 Bacillus sp. FDAARGOS_235 1839798 0 1 0 1 11983 Bacillus thuringiensis 1428 species 1 0 species 155322 Bacillus toyonensis 1284 Bacillus cohnii 1860 33932 species 0 1 412384 1522 Bacillus aryabhattai species 1 0 24319 653685 species group 0 9 2216 Bacillus paralicheniformis 1648923 species 0 1 0 1 375 Bacillus vallismortis 72361 species 0 1 Bacillus atrophaeus 1750 1452 species species 119858 Bacillus sonorensis 1880 1 0 species 1402 Bacillus licheniformis 2459 1 0 0 1 species 8581 Bacillus subtilis 1423 0 3 species subgroup 7058 1938374 species 659243 Bacillus siamensis 1317 1 0 1 0 species 1390 3263 Bacillus amyloliquefaciens Bacillus velezensis 2478 492670 species 0 1 1471 1679 Bacillus methanolicus species 1 0 0 1 Bacillus gibsonii 275 79881 species Bacillus safensis 2625 561879 species 0 1 1178537 Bacillus xiamenensis 1176 species 1 0 1 0 species 135735 2185 Bacillus endophyticus 1398 Bacillus coagulans 4883 species 1 0 0 1 2888 Bacillus glycinifermentans 1664069 species 0 1 1634 Bacillus cellulosilyticus 1413 species 0 1 species Bacillus weihaiensis 2106 1547283 4431 Bacillus megaterium 1404 species 0 1 species Bacillus infantis 2092 324767 0 1 1672 Bacillus horikoshii 79883 species 0 1 species 5507 Bacillus pumilus 1408 0 1 1994 Bacillus beveridgei 632773 species 0 1 genus Oceanobacillus 2539 182709 1 0 25 2 species 182710 Oceanobacillus iheyensis 2514 1 0 genus 8176 Virgibacillus 84406 1 0 7 60 species Virgibacillus necropolis 1740 163877 0 1 0 1 species 1099 Virgibacillus pantothenticus 1473 1 0 1482 Virgibacillus halodenitrificans 1329 species 2550 2620237 no rank 0 2 0 1 Virgibacillus sp. SK37 1063 403957 species species 1911587 1487 Virgibacillus sp. 6R 1 0 species 1398 Virgibacillus phasianinus 2017483 0 1 351195 1121 genus 1 0 Salimicrobium jeotgali 1121 1230341 species 0 1 0 2 1 1 1590 Amphibacillus 29331 genus species Amphibacillus xylanus 1589 1449 0 1 0 1006 15 1 Geobacillus 15355 129337 genus Geobacillus thermodenitrificans 1281 33940 species 0 1 1 0 species 129338 1200 Geobacillus subterraneus species group 1505648 4054 4 0 0 1 Geobacillus thermocatenulatus 681 33938 species species Geobacillus lituanicus 1219 169283 0 1 0 1 species 1773 Geobacillus thermoleovorans 33941 species 381 Geobacillus kaustophilus 1462 0 1 1921421 895 Geobacillus genomosp. 3 species 1 0 0 6 no rank 5281 2642459 2124 Geobacillus sp. Y4.1MC1 581103 species 0 1 1 0 species 544556 Geobacillus sp. Y412MC61 457 1 0 species 1233873 497 Geobacillus sp. GHH01 0 1 516 Geobacillus sp. C56-T3 691437 species 471223 1183 Geobacillus sp. WCH70 species 1 0 species 504 Geobacillus sp. Y412MC52 550542 0 1 Geobacillus stearothermophilus 1638 1422 species 0 1 2675230 4271 genus 2 0 species 665099 Bacillus oceanisediminis 2453 1 0 1 0 species 859143 Bacillus kochii 1818 Parageobacillus 2186 1906945 genus 0 3 2 1 Parageobacillus thermoglucosidasius 2183 1426 species 0 1 0 6 17 1 7898 Anoxybacillus 150247 genus 33934 2294 Anoxybacillus flavithermus species 1 0 1 0 198467 Anoxybacillus gonensis 1441 species 294699 1357 Anoxybacillus amylolyticus species 1 0 2 0 2639704 2789 no rank 0 1 1324 Anoxybacillus sp. B2M1 1490052 species species Anoxybacillus sp. B7M1 1465 1490057 0 1 genus 2675234 9573 5 0 79880 2594 Bacillus clausii species 1 0 2023 Bacillus krulwichiae 199441 species 0 1 1 0 species 86665 Bacillus halodurans 1165 1 0 79885 Bacillus pseudofirmus 1700 species 1 0 300825 Bacillus lehensis 2091 species 27 83 0 1 186818 32074 Planococcaceae family 1 30 2 0 genus 157226 Jeotgalibacillus 1800 1508404 1770 Jeotgalibacillus malaysiensis species 1 0 2 1 0 1 648802 1485 Rummeliibacillus genus 241244 1484 Rummeliibacillus stabekisii species 1 0 Kurthia 1975 1649 genus 0 23 2 1 0 1 1952 2644826 no rank 1750719 1952 Kurthia sp. 11kri321 species 1 0 Planococcus 12569 1372 genus 0 420 12 1 1 0 414778 Planococcus donghaensis 1077 species 0 1 946 Planococcus kocurii 1374 species 0 1 991 Planococcus plakortidis 1038856 species 0 1 Planococcus maritimus 2485 192421 species 1065 Planococcus sp. L10.15 1302659 species 0 1 species Planococcus faecalis 862 1598147 0 1 0 1 1080 Planococcus antarcticus 161360 species 1215089 598 Planococcus halocryophilus species 1 0 1870 2662419 no rank 0 2 Planococcus sp. PAMC 21323 730 1526927 species 0 1 0 1 1140 Planococcus sp. MB-3u-03 2058136 species 200991 1175 Planococcus rifietoensis species 1 0 17 3 0 1 648800 Solibacillus 4760 genus no rank 2637870 1938 1 0 2048654 Solibacillus sp. R5-41 1938 species 1 0 1 0 76853 Solibacillus silvestris 2805 species genus 1569 9402 Sporosarcina 1 5 28 0 species 1476 1451 Sporosarcina psychrophila 1 0 2 0 no rank 2647733 4551 0 1 2088 Sporosarcina sp. P33 1930764 species species Sporosarcina sp. P37 2463 1930546 0 1 species Sporosarcina ureae 3372 1571 0 1 1 0 46 491 family 138361 Paenibacillaceae 186822 0 3 4242 85151 no rank 3 42 0 1 55079 4242 Aneurinibacillus genus Aneurinibacillus soli 2157 1500254 species 0 1 2043 2642329 no rank 0 1 species 1450761 Aneurinibacillus sp. XH2 2043 1 0 1 0 2 15 genus 4684 Thermobacillus 76632 1 0 377615 Thermobacillus composti 4669 species 44249 122312 Paenibacillus genus 36 1091 0 1 species 1870820 Paenibacillus ihbetae 3122 1 0 species Paenibacillus kribbensis 2448 172713 0 1 1 0 2044880 4375 species group species 483937 Paenibacillus riograndensis 4375 1 0 species 7739 Paenibacillus polymyxa 1406 0 1 1 0 species 59893 Paenibacillus peoriae 2022 1 0 189426 Paenibacillus odorifer 2302 species 1 0 1464 2480 Paenibacillus larvae species 2349 Paenibacillus naphthalenovorans 162209 species 0 1 1 0 1763538 1459 Paenibacillus crassostreae species 5856 Paenibacillus durus 44251 species 0 1 1 0 species 528191 2517 Paenibacillus xylanexedens Paenibacillus beijingensis 3091 1126833 species 0 1 species 1616788 3656 Paenibacillus bovis 1 0 1178515 Paenibacillus swuensis 1719 species 1 0 species 4637 Paenibacillus stellifer 169760 0 1 species Paenibacillus terrae 2848 159743 0 1 0 1 species 6016 Paenibacillus mucilaginosus 61624 13 0 no rank 185978 42486 species 1536770 Paenibacillus sp. FSL R5-0345 1759 1 0 0 1 Paenibacillus sp. FSL H7-0737 1984 1536775 species 0 1 Paenibacillus sp. FSL R7-0273 4969 1536772 species 0 1 2675 Paenibacillus sp. JDR-2 324057 species Paenibacillus sp. Y412MC10 2892 481743 species 0 1 Paenibacillus sp. lzh-N1 1943 2069255 species 0 1 species 3373 Paenibacillus sp. 32O-W 1695218 0 1 0 1 Paenibacillus sp. FSL P4-0081 4541 1536769 species 0 1 Paenibacillus sp. IHBB 10380 1349 1566358 species species Paenibacillus sp. FSL H7-0357 4328 1536774 0 1 species 1536771 4490 Paenibacillus sp. FSL R5-0912 1 0 1 0 1870819 Paenibacillus sp. BIHB4019 3055 species 0 1 5128 Paenibacillus sp. FSL R7-0331 1536773 species 1 0 365617 3074 Paenibacillus sabinae species 1 0 1462996 3378 Paenibacillus yonginensis species 414771 4777 Paenibacillus donghaensis species 1 0 species 189425 Paenibacillus graminis 3920 1 0 species Paenibacillus borealis 4950 160799 0 1 1 0 4 48 genus 6632 Brevibacillus 55080 species 1393 2566 Brevibacillus brevis 1 0 1465 2563 Brevibacillus laterosporus species 1 0 species 54913 1455 Brevibacillus formosus 1 0 1894 Thermoactinomycetaceae 186824 family 0 4 6 1 1677050 Novibacillus 1825 genus 87 2 0 1 1471761 Novibacillus thermophilus 1738 species 1 0 0 1 Laceyella 63 292635 genus 0 9 9854 539002 no rank no rank 2457 539738 0 2 genus 2457 Gemella 1378 1 0 2 7 no rank 2624949 2450 1 0 0 1 2450 Gemella sp. oral taxon 928 1785995 species no rank 539742 7397 7 0 33986 7397 Exiguobacterium genus 7 186 0 1 species Exiguobacterium antarcticum 1259 132920 0 1 4 0 no rank 2644629 4948 1 0 species 360911 Exiguobacterium sp. AT1b 1044 0 1 1489 Exiguobacterium sp. ZWU0009 1224749 species 1 0 species 1849031 Exiguobacterium sp. U13-1 1454 1 0 1399115 961 Exiguobacterium sp. MH3 species 1004 Exiguobacterium sibiricum 332410 species 0 1 0 7677 165 1 Lactobacillales 457484 186826 order 1 0 263855 1143 no rank 1143 Lactobacillales bacterium 1993866 species 0 1 81850 Leuconostocaceae 22776 family 2 18 0 1 genus 10739 Leuconostoc 1243 1 0 9 53 species 2046 Leuconostoc mesenteroides 1245 0 1 1 0 1252 623 Leuconostoc carnosum species 1 0 255248 Leuconostoc garlicum 621 species species 1244 Leuconostoc gelidum 1017 1 0 1 0 species 1246 Leuconostoc lactis 643 2685106 469 no rank 1 0 0 1 species 469 Leuconostoc sp. C2 979982 33964 4677 Leuconostoc citreum species 1 0 1 0 136609 Leuconostoc kimchii 590 species genus 46254 Oenococcus 992 1 1 2 0 1 0 1247 991 Oenococcus oeni species 21 6 0 1 46255 Weissella 11043 genus Weissella paramesenteroides 792 1249 species 0 1 759620 Weissella ceti 657 species 1 0 1631871 818 Weissella jogaejeotgali species 1 0 1 0 137591 Weissella cibaria 8207 species 1 0 species 165096 Weissella koreensis 548 0 172 19 1 Enterococcaceae 77966 81852 family genus Tetragenococcus 2105 51668 1 0 8 2 1 0 species 51669 2097 Tetragenococcus halophilus 33969 1533 genus 1 0 1 0 33970 1533 Melissococcus plutonius species 71360 Enterococcus 1350 genus 0 12 6374 1 1 0 2005703 Enterococcus wangshanyuanii 1874 species 3 0 no rank 2608891 5192 2060307 Enterococcus sp. FDAARGOS_375 1585 species 1 0 1 0 2060306 1873 Enterococcus sp. FDAARGOS_163 species 0 1 1734 Enterococcus sp. CR-Ec1 2057791 species 0 1 species Enterococcus durans 2478 53345 0 1 species Enterococcus mundtii 1665 53346 0 1 species 1280 Enterococcus thailandicus 417368 1 0 species 1351 20239 Enterococcus faecalis 0 1 species Enterococcus hirae 2063 1354 species 37734 Enterococcus casseliflavus 1327 1 0 0 1 Enterococcus faecium 28868 1352 species genus Vagococcus 2796 2737 1 0 11 3 Vagococcus penaei 1218 633807 species 0 1 0 1 Vagococcus teuberi 1567 519472 species 1 0 3983 49 family Streptococcaceae 220111 1300 1357 Lactococcus 10657 genus 34 5 0 1 species Lactococcus raffinolactis 1001 1366 0 1 species 1363 Lactococcus garvieae 1468 1 0 1 0 1364 1173 Lactococcus piscium species species Lactococcus lactis 6981 1358 0 1 genus 1301 Streptococcus 205471 1 9049 43 0 Streptococcus halotolerans 915 1814128 species 0 1 species Streptococcus agalactiae 14642 1311 0 1 species Streptococcus salivarius 12266 1304 0 1 1466 Streptococcus mutans 1309 species 0 1 species 1335 2072 Streptococcus equinus 1 0 0 1 species Streptococcus macedonicus 930 59310 species 1427 Streptococcus parauberis 1348 0 1 4932 Streptococcus thermophilus 1308 species 0 1 species 257758 Streptococcus pseudopneumoniae 962 1 0 1 0 400065 1010 Streptococcus merionis species 903 Streptococcus uberis 1349 species 0 1 2 0 119603 4317 species group 1334 Streptococcus dysgalactiae 1357 species 1 0 2960 Streptococcus equi 1336 species 0 1 28037 Streptococcus mitis 3758 species 1 0 0 1 species Streptococcus pantholopis 1873 1811193 0 7 12792 2608887 no rank 0 1 species 2075 Streptococcus sp. A12 1759399 Streptococcus sp. oral taxon 431 1030 712633 species 0 1 1 0 1156433 2108 Streptococcus sp. I-P16 species 1 0 species 1156431 2004 Streptococcus sp. I-G2 3474 Streptococcus sp. FDAARGOS_192 1839799 species 0 1 1 0 species 1902136 1082 Streptococcus sp. NPS 308 species 1319 1019 Streptococcus sp. 'group B' 1 0 1 0 1825069 Streptococcus marmotae 1047 species 1 0 1888195 871 Streptococcus himalayensis species species 4508 Streptococcus pyogenes 1314 0 1 1 0 species 82348 Streptococcus pluranimalium 762 6999 Streptococcus parasanguinis 1318 species 0 1 0 1 species 5787 Streptococcus pasteurianus 197614 0 1 species 3960 Streptococcus oralis 1303 1 0 species 1305 2770 Streptococcus sanguinis 150055 Streptococcus lutetiensis 6639 species 1 0 1 0 1326 1961 Streptococcus acidominimus species Streptococcus pneumoniae 3080 1313 species 0 1 species Streptococcus gordonii 4056 1302 0 1 0 1 7188 Streptococcus infantarius 102684 species 0 1 Streptococcus cristatus 1362 45634 species species group 59733 671232 0 3 1 0 species 1328 30327 Streptococcus anginosus 0 1 Streptococcus constellatus 26031 76860 species 0 1 species Streptococcus intermedius 3375 1338 2355 Streptococcus gallolyticus 315405 species 0 1 species 1307 Streptococcus suis 16695 1 0 0 1 2384 Streptococcus iniae 1346 species 1 5 8 0 family 186827 Aerococcaceae 8023 Aerococcus 8018 1375 genus 0 296 7 1 Aerococcus viridans 1174 1377 species 0 1 1 0 species 119206 1371 Aerococcus sanguinicola 1 0 species 87541 Aerococcus christensenii 1066 0 1 1445 Aerococcus urinaehominis 128944 species 1376 1337 Aerococcus urinae species 1 0 species 1329 Aerococcus urinaeequi 51665 0 1 0 449 58 1 Lactobacillaceae 109411 33958 family genus 2767886 2879 3 0 1 0 637971 Lactobacillus koreensis 714 species 1 0 267363 874 Lactobacillus zymae species 0 1 species 1291 Lactobacillus brevis 1580 1 0 genus 2767890 763 0 1 species 763 Lactobacillus hokkaidonensis 1193095 1 0 genus 2767892 1019 240427 1019 Lactobacillus paracollinoides species 1 0 0 4 18194 2767887 genus 0 1 Lactobacillus ruminis 5353 1623 species 0 1 species Lactobacillus agilis 7247 1601 species Lactobacillus acidipiscis 1109 89059 0 1 species 4485 Lactobacillus salivarius 1624 0 1 0 2 genus 2519 2767885 28038 973 Lactobacillus curvatus species 1 0 species Lactobacillus sakei 1546 1599 0 1 0 1 genus 11921 2767876 Lactobacillus amylophilus 11921 1603 species 0 1 3 0 genus 2767893 3221 species 152331 682 Lactobacillus parabuchneri 1 0 species Lactobacillus buchneri 1343 1581 0 1 species 1196 Lactobacillus curieae 1138822 0 1 0 3 5806 2742598 genus species 1613 1728 Lactobacillus fermentum 1 0 species 1598 2277 Lactobacillus reuteri 1 0 1801 Lactobacillus mucosae 97478 species 0 1 6009 2759736 genus 0 3 0 1 2685 Lactobacillus casei 1582 species 0 1 species Lactobacillus paracasei 1700 1597 1624 Lactobacillus rhamnosus 47715 species 0 1 0 37 6 1 Pediococcus 5700 1253 genus species Pediococcus claussenii 771 187452 0 1 0 1 1608 Pediococcus pentosaceus 1255 species 1 0 species 114090 Pediococcus inopinatus 664 species 1350 Pediococcus damnosus 51663 0 1 1 0 1670797 1270 species group 1254 1270 Pediococcus acidilactici species 1 0 3279 2767842 genus 0 3 species 1812 Lactobacillus plantarum 1590 0 1 846 Lactobacillus pentosus 1589 species 0 1 60520 Lactobacillus paraplantarum 621 species 1 0 0 2 4340 2767881 genus 1 0 1625 3624 Lactobacillus sanfranciscensis species 53444 716 Lactobacillus lindneri species 1 0 6 0 genus 2767879 7018 0 1 Lactobacillus crustorum 1186 392416 species 1 0 1847728 1346 Lactobacillus allii species species 948 Lactobacillus heilongjiangensis 1074467 0 1 1 0 species 1612 1318 Lactobacillus farciminis 1 0 1007676 1030 Lactobacillus ginsenosidimutans species 0 1 species 1190 Lactobacillus alimentarius 1602 0 2 2182 2767889 genus 1610 Lactobacillus coryniformis 1269 species 1 0 1 0 species 375175 Lactobacillus backii 913 0 16 5177 1 33427 Lactobacillus 1578 genus species 1600 980 Lactobacillus acetotolerans 1 0 52242 1789 Lactobacillus gallinarum species 1 0 species 667 Lactobacillus kefiranofaciens 267818 0 1 4 0 no rank 2620435 2273 species Lactobacillus sp. D1501 430 2108362 0 1 2099789 Lactobacillus sp. CBA3606 585 species 1 0 2099788 577 Lactobacillus sp. CBA3605 species 1 0 681 Lactobacillus sp. wkB8 1545702 species 0 1 0 1 species 2273 Lactobacillus gasseri 1596 1579 1044 Lactobacillus acidophilus species 1 0 species 1584 Lactobacillus delbrueckii 3799 1 0 1 0 species 33959 3372 Lactobacillus johnsonii 1587 1764 Lactobacillus helveticus species 1 0 0 1 Lactobacillus amylovorus 8330 1604 species species 109790 1215 Lactobacillus jensenii 1 0 species Lactobacillus amylolyticus 744 83683 0 1 1 0 genus 2767877 685 148814 Lactobacillus kunkeei 685 species 1 0 Carnobacteriaceae 10377 186828 family 0 11 11 1 genus 1904 Marinilactibacillus 191769 1 0 2 14 1 0 no rank 2632303 1890 1 0 species 1911586 Marinilactibacillus sp. 15R 1890 2747 Carnobacterium 5723 genus 14 5 0 1 species Carnobacterium maltaromaticum 1724 2751 0 1 no rank 257487 2738 2 0 1457 Carnobacterium sp. 17-4 208596 species 0 1 1 0 species 1564681 Carnobacterium sp. CP1 1281 1 0 species 147709 1247 Carnobacterium inhibens genus Jeotgalibaca 2739 1470540 1 0 14 3 0 1 987 Jeotgalibaca dankookensis 708126 species 0 1 1738 2621505 no rank species 1903686 Jeotgalibaca sp. PTS2502 1738 1 0 1 11 16 0 class 526524 49763 Erysipelotrichia 0 88 10 1 Erysipelotrichales 49747 526525 order Erysipelotrichaceae 49659 128827 family 0 92 9 1 1 0 2 32 genus 7153 Turicibacter 191303 2638206 7121 no rank 1 0 species 1712675 Turicibacter sp. H121 7121 1 0 genus 9625 Faecalibaculum 1729679 1 0 2 90 1 0 species 1702221 Faecalibaculum rodentium 9535 genus Erysipelothrix 4320 1647 1 0 70 3 species 2148 Erysipelothrix rhusiopathiae 1648 0 1 1514105 Erysipelothrix larvae 2102 species 1 0 1 0 no rank 544447 28469 1 0 1834207 Erysipelotrichaceae bacterium I46 28469 species 0 2 2050 33974 no rank Ndongobacter 2050 1930845 genus 0 24 2 1 1 0 species 1871025 Ndongobacter massiliensis 2026 0 50 18 1 Tissierellia 36628 1737404 class 15 680 0 1 1737405 35157 Tissierellales order family Peptoniphilaceae 32285 1570339 1 0 9862 12 genus 12355 Murdochiella 1161127 1 0 2 7 species 1852373 12348 Murdochiella vaginalis 1 0 1 0 11 3 genus Anaerococcus 2793 165779 species 1208 Anaerococcus mediterraneensis 1870984 0 1 1 0 species 33034 1574 Anaerococcus prevotii genus 150022 Finegoldia 2459 1 5 2 0 1 0 1260 2454 Finegoldia magna species genus 2299 Parvimonas 543311 1 0 2 29 33033 2270 Parvimonas micra species 1 0 genus 162289 2517 Peptoniphilus 1 2 25 0 0 1 2492 2637196 no rank Peptoniphilus sp. ING2-D1G 2492 1912856 species 0 1 1 0 24 2 family Gottschalkiaceae 2192 2042895 1505664 2168 genus 1 0 Gottschalkia acidurici 2168 1556 species 0 1 1737407 1421 no rank 2 0 1 2 16 0 genus 1582879 1421 Ezakiella 1 0 1852374 1405 Ezakiella massiliensis species class 2801 Limnochordia 1676648 1 0 5 13 0 74 4 1 Limnochordales 2788 1676649 order 2714 Limnochordaceae 1676650 family 0 3 15 1 2 45 0 1 1676651 2699 Limnochorda genus 0 1 species Limnochorda pilosa 2654 1555112 0 36 51364 1297 phylum class 51364 Deinococci 188787 1 0 36 338 0 3 1331 2762275 order family 332247 Trueperaceae 1331 1 21 3 0 22 2 0 1 332248 Truepera 1310 genus 0 1 species 1288 Truepera radiovictrix 332249 order 118964 Deinococcales 31707 1 398 15 0 0 161 14 1 Deinococcaceae 31309 183710 family Deinococcus 31148 1298 genus 0 339 13 1 species 3319 Deinococcus swuensis 1182571 0 1 1 0 species 55148 3628 Deinococcus proteolyticus species Deinococcus puniceus 2193 1182568 0 1 1 0 species 1768108 2916 Deinococcus actinosclerus 1 0 2623546 2368 no rank species 2080419 2368 Deinococcus sp. NW-56 1 0 2775 Deinococcus soli Cha et al. 2016 1309411 species 0 1 species 502394 Deinococcus gobiensis 3255 1 0 Deinococcus peraridilitoris 1783 432329 species 0 1 1911 Deinococcus deserti 310783 species 0 1 309887 Deinococcus maricopensis 2082 species 1 0 1299 2463 Deinococcus radiodurans species 1 0 1 0 species 68909 Deinococcus geothermalis 2116 1 17 246 0 order 68933 17988 Thermales 188786 17742 Thermaceae family 16 123 0 1 genus Marinithermus 1297 186191 1 0 14 2 species 186192 1283 Marinithermus hydrothermalis 1 0 1 0 13 2 genus Oceanithermus 2663 208447 1 0 species 187137 Oceanithermus profundus 2650 genus Meiothermus 3746 65551 1 0 38 3 1 0 52022 1328 Meiothermus silvanus species species Meiothermus ruber 2380 277 0 1 8 212 0 1 270 9913 Thermus genus 56957 1333 Thermus oshimai species 1 0 1 0 456163 1174 Thermus parvatiensis species species 56956 700 Thermus brockianus 1 0 0 1 species 2883 Thermus thermophilus 274 1421 Thermus aquaticus 271 species 0 1 37636 1089 Thermus scotoductus species 1 0 no rank 1101 2619321 0 1 1111069 1101 Thermus sp. CCB_US3_UF1 species 1 0 544448 60294 Tenericutes phylum 101 23 0 1 31969 53730 Mollicutes class 96 46 0 1 186328 24748 Entomoplasmatales order 39 90 0 1 family 2131 15715 Spiroplasmataceae 1 24 94 0 genus 2132 15621 Spiroplasma 1 23 765 0 2637901 864 no rank 2 0 species 432 Spiroplasma sp. NBRC 100390 1914410 0 1 1 0 1898044 432 Spiroplasma sp. TU-14 species 1 0 2136 Spiroplasma monobiae 565 species 0 1 species 819 Spiroplasma cantharicola 362837 1 0 216934 Spiroplasma corruscae 644 species 619 Spiroplasma diminutum 216936 species 0 1 0 1 species 789 Spiroplasma helicoides 216938 0 1 Spiroplasma citri 823 2133 species species Spiroplasma apis 777 2137 0 1 547 Spiroplasma taiwanense 2145 species 0 1 0 1 Spiroplasma syrphidicola 396 216945 species 1 0 2144 619 Spiroplasma mirum species 1 0 species 1114980 632 Spiroplasma atrichopogonis 1 0 47834 672 Spiroplasma kunkelii species species 216933 Spiroplasma chrysopicola 521 1 0 0 1 Spiroplasma floricola 676 216937 species 1 0 315358 865 Spiroplasma eriocheiris species 819 Spiroplasma litorale 216942 species 0 1 1 0 216946 811 Spiroplasma turonicum species Spiroplasma culicicola 1142 216935 species 0 1 1 0 species 2139 Spiroplasma clarkii 682 0 1 species Spiroplasma sabaudiense 574 216944 family 8943 Entomoplasmataceae 33925 1 0 14 12 1 8 489 0 genus 46239 6132 Mesoplasma 0 1 Mesoplasma entomophilum 670 2149 species 1 0 138853 771 Mesoplasma lactucae species 1 0 species 216427 512 Mesoplasma chauliocola 0 1 species Mesoplasma syrphidae 1071 225999 1 0 species 324078 Mesoplasma coleopterae 711 species 2151 Mesoplasma florum 1408 1 0 0 1 Mesoplasma tabanidae 500 219745 species 46238 2799 Entomoplasma genus 5 116 0 1 Entomoplasma somnilux 598 215578 species 0 1 1 0 74700 328 Entomoplasma freundtii species 0 1 1035 Entomoplasma melaleucae 81459 species 1 0 214888 722 Entomoplasma luminosum species 0 43 28 1 19792 Mycoplasmatales 2085 order 1 75 42 0 family 2092 Mycoplasmataceae 19764 0 12 6195 2767358 genus 1 0 species 2115 Mycoplasma fermentans 701 species 48003 Mycoplasma pullorum 410 1 0 1 0 28903 Mycoplasma bovis 783 species 1 0 species 2113 376 Mycoplasma californicum 0 1 species 417 Mycoplasma pulmonis 2107 1 0 species 2112 Mycoplasma bovigenitalium 357 171284 583 Mycoplasma cynos species 1 0 0 1 343 Mycoplasma arginini 2094 species 1 0 29553 550 Mycoplasma bovirhinis species 2109 511 Mycoplasma synoviae species 1 0 Mycoplasma canis 673 29555 species 0 1 Mycoplasma agalactiae 491 2110 species 0 1 2 0 genus 2129 1099 426 Ureaplasma urealyticum 2130 species 0 1 134821 673 Ureaplasma parvum species 1 0 0 27 124 1 12395 Mycoplasma 2093 genus 0 1 species Mycoplasma mobile 707 2118 0 1 Mycoplasma crocodyli 822 50052 species species 54 Mycoplasma parvum 984991 0 1 species 831 Mycoplasma yeatsii 51365 0 1 species 517 Mycoplasma putrefaciens 2123 0 1 86660 Mycoplasma dispar 333 species 1 0 1 0 species 2104 291 Mycoplasma pneumoniae 0 1 82 Mycoplasma haemocanis 136241 species 1 0 2097 Mycoplasma genitalium 219 species species Mycoplasma wenyonii 108 65123 0 1 1 0 species 2098 697 Mycoplasma hominis species Mycoplasma haemofelis 108 29501 0 1 0 1 species Mycoplasma hyopneumoniae 368 2099 0 1 271 Mycoplasma flocculare 2128 species Mycoplasma bovoculi 322 45362 species 0 1 524 Mycoplasma hyorhinis 2100 species 0 1 0 1 species Mycoplasma suis 155 57372 656088 3087 species group 3 0 Mycoplasma leachii 866 2105 species 0 1 1 0 species 2102 Mycoplasma mycoides 1264 species 2095 957 Mycoplasma capricolum 1 0 0 1 155 Mycoplasma ovis 171632 species 1 0 species 2096 374 Mycoplasma gallisepticum 1 0 29554 Mycoplasma canadense 362 species 2683645 691 no rank 1 0 0 1 species Mycoplasma sp. (ex Biomphalaria glabrata) 691 1749074 0 1 Mycoplasma arthritidis 383 2111 species 28227 Mycoplasma penetrans 810 species 1 0 order 186329 Acholeplasmatales 9144 1 9 13 0 family Acholeplasmataceae 9135 2146 1 0 101 12 genus Candidatus Phytoplasma 3136 33926 1 0 65 6 species group 495 85632 0 1 Candidatus Phytoplasma australiense 495 59748 species 0 1 3 0 85620 2072 species group species 625 Aster yellows witches'-broom phytoplasma 229545 0 1 species 100379 795 Onion yellows phytoplasma 1 0 202462 Maize bushy stunt phytoplasma 652 species 1 0 species group 504 85630 0 1 0 1 Candidatus Phytoplasma mali 504 37692 species 1 0 100 5 genus Acholeplasma 5898 2147 Acholeplasma laidlawii 847 2148 species 0 1 0 1 1627 Acholeplasma oculi 35623 species 0 1 species 1519 Acholeplasma brassicae 61635 0 1 species Acholeplasma palmae 1805 38986 2 0 2799557 1456 no rank 1912503 Candidatus Izimaplasma 1456 genus 1 2 0 1 0 1 no rank 1455 2624196 species 1541959 1455 Candidatus Izimaplasma sp. HR1 1 0 2 0 713063 5085 no rank 1 0 1911683 2682 Tenericutes bacterium MZ-XQ species 0 1 species Tenericutes bacterium MO-XQ 2403 1911684 200795 27833 Chloroflexi phylum 46 3 0 1 class 189775 Thermomicrobia 2380 1 29 8 0 4 0 85000 1676 subclass 85001 1676 Sphaerobacterales order 4 40 0 1 1636 255728 suborder 0 3 0 15 3 1 Sphaerobacteraceae 1636 85002 family genus Sphaerobacter 1621 2056 1 0 71 2 1 0 species 2057 Sphaerobacter thermophilus 1550 order 189776 675 Thermomicrobiales 1 3 12 0 1 2 8 0 family 189777 663 Thermomicrobiaceae 655 499 genus 0 1 655 Thermomicrobium roseum 500 species 0 1 475962 1918 Caldilineae class 5 4 0 1 order Caldilineales 1914 475963 1 0 14 4 1 3 4 0 family 475964 1900 Caldilineaceae 233191 Caldilinea 1896 genus 14 2 0 1 Caldilinea aerophila 1882 133453 species 0 1 class 1382928 Ardenticatenia 4519 1 94 5 0 1382929 Ardenticatenales 4425 order 41 4 0 1 0 25 3 1 Ardenticatenaceae 4384 1382930 family 1 15 2 0 genus 1988031 Candidatus Promineofilum 4359 species 1806508 Candidatus Promineofilum breve 4344 1 0 class 6148 Dehalococcoidia 301297 1 0 8 18 genus Dehalogenimonas 2323 670486 1 0 68 3 552810 Dehalogenimonas lykanthroporepellens 1288 species 1 0 1 0 species 1839801 967 Dehalogenimonas formicexedens 1 0 4 4 order 3807 Dehalococcoidales 1202465 3803 1202464 family 0 3 1 3 2 0 genus 61434 3803 Dehalococcoides no rank 237581 470 1 0 species 470 Dehalococcoides sp. UCH007 1522671 0 1 species Dehalococcoides mccartyi 3331 61435 0 1 32061 5844 Chloroflexia class 11 20 0 1 Chloroflexales 5824 32064 order 0 50 10 1 0 4 suborder 3008 1508595 0 16 4 1 Roseiflexaceae 3008 1508635 family genus 2992 Roseiflexus 120961 1 0 3 7 120962 1471 Roseiflexus castenholzii species 1 0 1 0 2609473 1514 no rank species 357808 1514 Roseiflexus sp. RS-1 1 0 5 0 suborder 1508594 2766 1 0 5 8 family 2766 Chloroflexaceae 1106 2758 Chloroflexus 1107 genus 0 4 81 1 0 2 925 1 1850 Chloroflexus aurantiacus 1108 species 480224 925 Chloroflexus sp. Y-400-fl strain 1 0 1 0 152260 827 Chloroflexus aggregans species 292625 Anaerolineae 7021 class 5 8 0 1 0 67 7 1 Anaerolineales 7016 292629 order 6949 Anaerolineaceae 292628 family 0 6 12 1 1 0 1324991 4079 no rank 1 0 species 1889813 4079 Anaerolineaceae bacterium oral taxon 439 8 2 0 1 233189 Anaerolinea 1805 genus 0 1 Anaerolinea thermophila 1797 167964 species genus 2019482 Brevefilum 1053 1 4 2 0 species 1986204 Brevefilum fermentans 1049 1 0 0 3 phylum 431 2138240 class 2138243 Coprothermobacteria 431 1 1 3 0 430 2138246 order 0 2 2138247 430 Coprothermobacteraceae family 2 7 0 1 423 68335 genus 0 1 35786 Coprothermobacter proteolyticus 423 species 1 0 7301 40117 phylum 0 12 1 12 17 0 class 203693 7301 Nitrospira 1 0 11 72 order 7284 Nitrospirales 189778 189779 7212 Nitrospiraceae family 10 16 0 1 1 8 5 0 genus 1234 Nitrospira 4287 species 42253 Nitrospira moscoviensis 1427 1 0 1715989 836 Candidatus Nitrospira inopinata species 1 0 1 0 species 1325564 1062 Nitrospira japonica species 330214 954 Nitrospira defluvii 1 0 0 3 genus 1977 179 0 1 species group 709 261386 178606 709 Leptospirillum ferriphilum species 1 0 1 0 261385 710 species group 1 0 species 1660083 Leptospirillum sp. Group II 'CF-1' 710 0 1 558 655606 species group species Leptospirillum ferrooxidans 558 180 0 1 28261 932 genus 1 0 0 1 species 932 Thermodesulfovibrio yellowstonii 28262 2498710 384 clade 3 0 3 0 phylum 67814 384 3 0 693071 384 class order 384 693072 0 3 Caldisericaceae 384 693073 family 0 4 3 1 genus 693074 380 Caldisericum 1 2 13 0 0 1 species 367 Caldisericum exile 693075 374 0 clade 1783270 15123869 359 0 68336 15114299 clade 22 0 phylum 1090 19643 102 22 0 1 191410 Chlorobia 19643 class 0 270 21 1 Chlorobiales 19541 191411 order family 19271 Chlorobiaceae 191412 1 0 20 88 8 0 no rank 274493 7657 genus 1099 Pelodictyon 3070 1 9 3 0 1 0 species 34090 1043 Pelodictyon phaeoclathratiforme 1 0 1100 Pelodictyon luteolum 2018 species genus 4587 Chlorobium 1091 1 0 5 16 1 0 337090 555 Chlorobium chlorochromatii species 0 1 Chlorobium phaeovibrioides 738 1094 species 1 0 species 1092 Chlorobium limicola 1096 1 0 1096 2182 Chlorobium phaeobacteroides species 100715 Chloroherpeton 1078 genus 16 2 0 1 1 0 100716 Chloroherpeton thalassium 1062 species 1 0 4 27 genus 6293 Chlorobaculum 256319 species 2623 Chlorobaculum limnaeum 274537 0 1 1 0 274539 Chlorobaculum parvum 2047 species species 1596 Chlorobaculum tepidum 1097 0 1 0 5 1 1 4155 Prosthecochloris 1101 genus 0 1 1025 Prosthecochloris aestuarii 1102 species 2632826 3129 no rank 3 0 species 996 Prosthecochloris sp. HL-130-GSB 1974213 0 1 1 0 species 281093 Prosthecochloris sp. GSB1 1341 0 1 species Prosthecochloris sp. CIB 2401 792 1868325 1 0 47 330 phylum Bacteroidetes 15092128 976 0 7 7 1 Saprospiria 3894 1937959 class 5 6 0 1 1936988 Saprospirales 3887 order 0 2 1026 89374 family Saprospira 1026 1007 genus 0 2 2 1 0 1 species Saprospira grandis 1024 1008 1937961 Haliscomenobacteraceae 2856 family 1 3 0 1 2349 Haliscomenobacter 2855 genus 6 2 0 1 0 1 Haliscomenobacter hydrossis 2849 2350 species 1 0 58 136 class 83553 Cytophagia 768503 768507 83417 Cytophagales order 57 287 0 1 1361 Bernardetiaceae 1937968 family 0 3 7 1 23 2 0 1 1937972 Bernardetia 1354 genus 1 0 species 999 Bernardetia litoralis 1331 1 0 4 9 family 4861 Flammeovirgaceae 200667 no rank 340671 2842 1 0 2842 Flammeovirgaceae bacterium 311 1257021 species 0 1 1 0 2 2 genus 2010 Flammeovirga 59739 no rank 2008 2637820 0 1 1 0 species 1191459 Flammeovirga sp. MY04 2008 family 6359 Cyclobacteriaceae 563798 1 0 9 4 0 2 4 1 1746 Echinicola 390846 genus 1 0 species 390884 Echinicola vietnamensis 1742 1 2 6 0 genus 246875 956 Algoriphagus 950 Algoriphagus sp. M8-2 1727163 species 0 1 68288 2237 Cyclobacterium genus 3 5 0 1 1174 Cyclobacterium marinum 104 species 0 1 1 0 species 320787 1058 Cyclobacterium amurskyense 1416 232244 genus 0 1 Belliella baltica 1416 232259 species 0 1 1 3 2 0 family 1501348 800 Amoebophilaceae 0 1 383 281119 genus 1 0 281120 Candidatus Amoebophilus asiaticus 383 species genus 273135 415 1 0 1 0 no rank 2641185 415 249402 Cardinium endosymbiont of Encarsia pergandiella 415 species 1 0 family 2762301 1157 2 0 1 0 5 2 genus Marivirga 1157 869806 1 0 species 1006 Marivirga tractuosa 1152 0 17 68 1 22681 Cytophagaceae 89373 family 1 4 2 0 genus 861914 Fibrella 1839 2620963 1835 no rank 1 0 Fibrella sp. ES10-3-2-2 1835 1834519 species 0 1 107 11157 Spirosoma genus 6 33 0 1 1211326 Spirosoma aerolatum 1613 species 1 0 1 0 species 564064 Spirosoma rigui 2273 species 2325 Spirosoma sp. HA7 2057025 0 1 1379870 2250 Spirosoma radiotolerans species 1 0 Spirosoma montaniterrae 2663 1178516 species 0 1 genus Cytophaga 1936 978 1 0 15 2 1 0 985 Cytophaga hutchinsonii 1921 species 3012 Runella 105 genus 0 2 6 1 0 1 Runella slithyformis 3006 106 species 120831 3160 Dyadobacter genus 2 1 0 1 species 94254 Dyadobacter fermentans 3159 1 0 1 0 2 2 genus 1509 Leadbetterella 319458 species 316068 1507 Leadbetterella byssophila 1 0 1 16 105 0 family 1853232 43156 Hymenobacteraceae 1 0 21 4 genus Rufibacter 6365 1379908 2 0 no rank 2639626 4139 1 0 species 1379909 1973 Rufibacter sp. DG15C 2166 Rufibacter sp. DG31D 1379910 species 0 1 512763 2205 Rufibacter tibetensis species 1 0 1 283 8 0 genus 89966 Hymenobacter 31917 0 1 Hymenobacter sedentarius 5174 1411621 species 22183 2615202 no rank 0 5 0 1 species Hymenobacter sp. PAMC 26554 4747 1484116 1 0 1356852 Hymenobacter sp. APR13 5290 species 0 1 species 3085 Hymenobacter sp. DG25A 1385663 1 0 1484118 Hymenobacter sp. PAMC 26628 5326 species 1 0 1385664 Hymenobacter sp. DG25B 3735 species 1 0 species 1446467 4277 Hymenobacter swuensis 1 3 14 0 genus 323449 4769 Pontibacter 400092 Pontibacter korlensis 2029 species 1 0 species 2726 Pontibacter akesuensis 388950 0 1 2 0 family 1853234 2755 1 0 2 27 genus 2755 Persicobacter 59740 2728 2664020 no rank 0 1 1 0 1085624 Persicobacter sp. JZB09 2728 species 1 0 24 42 class 30756 Sphingobacteriia 117747 order 200666 Sphingobacteriales 30714 1 23 23 0 family 84566 30691 Sphingobacteriaceae 1 22 42 0 genus 6224 Mucilaginibacter 423349 1 0 4 66 0 1 no rank 2088 2617802 1 0 species 1300914 Mucilaginibacter sp. PAMC 26640 2088 1 0 1234841 1839 Mucilaginibacter sp. BJC16-A31 species 1550579 Mucilaginibacter gotjawali 2231 species 1 0 1 0 16 6 genus Pedobacter 9636 84567 1 0 363852 1828 Pedobacter ginsengisoli species 1 0 no rank 2628915 2035 1 0 1727164 2035 Pedobacter sp. PACM 27299 species 0 1 1657 Pedobacter cryoconitis 188932 species 1 0 430522 2193 Pedobacter steynii species species 984 Pedobacter heparinus 1907 1 0 genus 8798 Sphingobacterium 28453 1 0 6 31 1 0 1010 1421 Sphingobacterium mizutaii species no rank 2609468 7346 4 0 species Sphingobacterium sp. ML3W 1394 1538644 0 1 species 2076 Sphingobacterium sp. B29 1933220 0 1 species 743722 Sphingobacterium sp. 21 1672 1 0 species Sphingobacterium sp. G1-14 2204 2003121 0 1 1 9 2 0 genus 1649482 Pseudopedobacter 1957 0 1 1948 Pseudopedobacter saltans 151895 species 0 1 no rank 1860 84568 1860 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 species 0 1 1 5 2 0 genus 929509 Solitalea 2174 species 995 Solitalea canadensis 2169 1 0 1 0 169 7 order Bacteroidetes Order II. Incertae sedis 10295 1100069 family 563843 Rhodothermaceae 10126 1 85 6 0 0 1 no rank 3921 1196022 0 1 species Rhodothermaceae bacterium RA 3921 1779382 2 43 0 1 29548 4478 Rhodothermus genus 4435 Rhodothermus marinus 29549 species 0 1 genus 1642 Salinibacter 146918 1 0 2 13 1629 Salinibacter ruber 146919 species 0 1 class 14683519 Bacteroidia 200643 1 0 72 233 171549 14674215 Bacteroidales order 59 3705 0 1 1 0 185291 2203 no rank 0 1 2203 Bacteroidales bacterium CF 1400053 species 6 0 family 2005520 23020 1 7 2 0 genus 307628 Petrimonas 9141 1642646 Petrimonas mucosa 9134 species 1 0 genus 1784836 4260 Fermentimonas 1 2 1 0 0 1 species Fermentimonas caenicola 4259 1562970 0 67 2 1 Proteiniphilum 9619 294702 genus species 1642647 9552 Proteiniphilum saccharofermentans 1 0 1 0 35 4 family Porphyromonadaceae 18763 171551 0 3 56 1 18728 Porphyromonas 836 genus Porphyromonas asaccharolytica 3048 28123 species 0 1 1 0 837 Porphyromonas gingivalis 15624 species family 225513 Barnesiellaceae 2005519 1 0 3 18 genus 397864 Barnesiella 225495 1 236 2 0 0 1 species 225259 Barnesiella viscericola 397865 11 39 0 1 171552 369220 Prevotellaceae family 546 10 0 1 838 Prevotella 369181 genus 1 0 species 839 12190 Prevotella ruminicola 0 1 species Prevotella jejuni 9850 1177574 28129 9401 Prevotella denticola species 1 0 1 0 2638335 2750 no rank 0 1 species Prevotella sp. oral taxon 299 2750 652716 1 0 species 76123 6637 Prevotella enoeca species 28132 9937 Prevotella melaninogenica 1 0 0 1 281154 Prevotella intermedia 28131 species 1 0 589436 Prevotella fusca 8293 species Prevotella dentalis 28423 52227 species 0 1 333046 3371438 no rank 5 0 511434 2079 Candidatus Azobacteroides genus 2 5 0 1 1 0 511435 Candidatus Azobacteroides pseudotrichonymphae 2074 species 3369359 909656 genus 0 3 species 821 2640084 Bacteroides vulgatus 1 0 376805 126321 Bacteroides salanitronis species 1 0 357276 602954 Bacteroides dorei species 1 0 family 9537116 Bacteroidaceae 815 1 0 11 99 genus 9537017 Bacteroides 816 1 0 10 126371 1796613 Bacteroides caecimuris 521514 species 1 0 1 0 28116 2758470 Bacteroides ovatus species species 290053 Bacteroides helcogenes 327520 1 0 0 1 Bacteroides zoogleoformans 222371 28119 species 28113 254769 Bacteroides heparinolyticus species 1 0 0 1 species 1144366 Bacteroides thetaiotaomicron 818 0 1 Bacteroides cellulosilyticus 369199 246787 species 1 0 species 817 Bacteroides fragilis 3678699 Bacteroides caccae 133738 47678 species 0 1 0 4 3 1 Paludibacteraceae 4677 2005523 family 1 15 2 0 genus 346096 Paludibacter 4673 0 1 Paludibacter propionicigenes 4658 185300 species 171550 254934 Rikenellaceae family 5 35 0 1 1 0 2 13 genus 3536 Mucinivorans 1611681 1433126 Mucinivorans hirudinis 3523 species 1 0 Alistipes 251363 239759 genus 0 94 2 1 1 0 species 214856 Alistipes finegoldii 251269 283 7 0 1 2005525 Tannerellaceae 768485 family 195950 46925 Tannerella genus 3 95 0 1 28112 34058 Tannerella forsythia species 1 0 no rank 2620507 12772 1 0 0 1 species 12772 Tannerella sp. oral taxon HOT-286 712710 334 3 0 1 375288 Parabacteroides 721277 genus species Parabacteroides distasonis 182566 823 0 1 no rank 538377 2649774 0 1 2025876 538377 Parabacteroides sp. CT06 species 1 0 95141 1853231 family 0 2 1 16 2 0 genus 283168 Odoribacter 95141 1 0 28118 95125 Odoribacter splanchnicus species 1970189 Marinilabiliales 9071 order 1 12 0 1 1573805 Marinifilaceae 1993 family 2 2 0 1 1 0 2060722 1991 genus species 1717717 Marinifilaceae bacterium SPP2 1991 1 0 0 4 3 1 Marinilabiliaceae 1629 558415 family 1 0 2 3 genus 1625 Alkalitalea 1193324 1622 Alkalitalea saponilacus 889453 species 0 1 1471398 3952 Prolixibacteraceae family 3 10 0 1 1 0 2 13 genus 3942 Draconibacterium 1471399 1 0 species 1168034 Draconibacterium orientale 3929 family 1496 Salinivirgaceae 1970190 1 0 3 4 2 2 0 1 1970191 Salinivirga 1492 genus species Salinivirga cyanobacteriivorans 1490 1307839 0 1 0 15 70 1 17284 Chitinophagia 1853228 class 1853229 17214 Chitinophagales order 14 44 0 1 13 50 0 1 563835 17170 Chitinophagaceae family 0 2 7 1 2334 Niastella 354354 genus species 2327 Niastella koreensis 354356 0 1 genus 1769012 1691 1 0 0 1 no rank 1691 2636138 Arachidicoccus sp. BS20 1691 1850526 species 0 1 1 0 2 5 genus 2833 Filimonas 649460 0 1 species Filimonas lacunae 2828 477680 genus 398041 1506 1 0 species 1492898 1506 Flavisolibacter tropicus 1 0 genus 3958 Niabella 379899 1 0 3 2 1881 Niabella ginsenosidivorans 1176587 species 0 1 0 1 species Niabella soli 2075 446683 1 5 3 0 genus 79328 Chitinophaga 4798 2029983 1759 Chitinophagaceae bacterium 13 species 1 0 1 0 species 79329 3034 Chitinophaga pinensis 1 146 141 0 class 117743 262780 Flavobacteriia 0 187 145 1 Flavobacteriales 262639 200644 order 1 0 246874 Cryomorphaceae 11 family 0 2 no rank 596 313602 genus 411 336809 0 1 species 411 Candidatus Sulcia muelleri 336810 0 1 genus 185 1940138 0 1 1415657 185 Candidatus Walczuchella monophlebidarum species 1 0 Crocinitomicaceae 1634 1853230 family 0 1 3 1 genus 332102 1633 Fluviicola 1 2 105 0 species 1528 Fluviicola taffensis 191579 0 1 1755828 Ichthyobacteriaceae 282 family 1 2 0 1 1755829 281 genus 1 0 1 0 242600 Ichthyobacterium seriolicida 281 species 10 2 0 1 39782 3616 Blattabacteriaceae family 34098 3614 Blattabacterium genus 9 171 0 1 species 480 Blattabacterium punctulatus 164514 0 1 1653831 395 Blattabacterium cuenoti species 1 0 2647581 2568 no rank 6 0 1 0 species 624186 Blattabacterium sp. (Blattella germanica) 465 0 1 species Blattabacterium sp. (Blaberus giganteus) 347 1186051 Blattabacterium sp. (Blatta orientalis) 524 367806 species 0 1 1 0 species 1316444 404 Blattabacterium sp. (Nauphoeta cinerea) 1 0 species 367488 542 Blattabacterium sp. (Periplaneta americana) 0 1 species 286 Blattabacterium sp. (Mastotermes darwiniensis) 39768 family 1317 1333713 0 2 genus 267986 1317 Owenweeksia 1 2 3 0 0 1 species Owenweeksia hongkongensis 1314 253245 137715 2762318 family 0 20 1 88 6 0 genus 308865 Elizabethkingia 14379 species 238 2141 Elizabethkingia meningoseptica 1 0 species 1756150 1476 Elizabethkingia genomosp. 4 1 0 0 1 species Elizabethkingia genomosp. 3 1789 1756149 species 172045 Elizabethkingia miricola 3186 1 0 0 1 Elizabethkingia anophelis 5699 1117645 species 1 195 2 0 genus 28250 Ornithobacterium 99165 98970 Ornithobacterium rhinotracheale 28251 species 0 1 1 0 genus 34084 3035 species 34085 Riemerella anatipestifer 3035 1 0 1 0 genus 1013 628 0 1 Weeksella virosa 628 1014 species 0 10 20508 2782232 no rank 0 1 genus 3230 2782228 3230 Chryseobacterium taklimakanense 536441 species 0 1 0 92 9 1 Chryseobacterium 17278 59732 genus 0 1 Chryseobacterium camelliae 1937 1265445 species 0 1 2008 Chryseobacterium glaciei 1685010 species 0 1 3332 Chryseobacterium indologenes 253 species 1 0 1324352 Chryseobacterium gallinarum 1893 species 1 0 species 558152 1544 Chryseobacterium piperi 0 3 6472 2593645 no rank species 2015076 2608 Chryseobacterium sp. T16E-39 1 0 species Chryseobacterium sp. StRB126 1917 878220 0 1 species 1947 Chryseobacterium sp. IHB B 17019 1721091 0 1 family 49546 117281 Flavobacteriaceae 1 104 3491 0 0 3 2 1 2427 Muricauda 111500 genus species 1311 Muricauda ruestringensis 111501 0 1 1 0 species 516051 1114 Muricauda lutaonensis 153265 775 Aequorivita genus 2 1 0 1 Aequorivita sublithincola 774 101385 species 0 1 genus Zobellia 1656 112040 1 0 5 2 1 0 species 63186 Zobellia galactanivorans 1651 0 1 genus 962 1649495 0 1 962 2622645 no rank 0 1 962 Seonamhaeicola sp. S2-3 1936081 species 0 1 genus 862 393005 species 2069432 862 Tamlana sp. UJ94 1 0 1 5 6 0 genus 52959 Polaribacter 6212 196858 3057 no rank 3 0 1529069 Polaribacter sp. BM10 916 species 1 0 313598 Polaribacter sp. MED152 1039 species 1 0 species Polaribacter sp. ALD11 1102 2058137 0 1 1 0 1774273 Polaribacter vadi 1482 species 0 1 1668 Polaribacter reichenbachii 996801 species 1204360 1062 genus 1 0 Siansivirga zeaxanthinifaciens 1062 762954 species 0 1 389486 629 genus 1 0 629 2648869 no rank 0 1 species Sediminicola sp. YIK13 629 1453352 0 1 1 0 genus 1209327 1460 species 1460 Flavivirga eckloniae 1803846 0 1 1336 225842 genus 0 2 no rank 2644710 1336 2 0 species 1336795 566 Formosa sp. Hel3_A1_48 1 0 1 0 species 1336794 Formosa sp. Hel1_33_131 770 genus Zunongwangia 1728 417127 1 0 10 2 Zunongwangia profunda 1718 398743 species 0 1 143222 1416 Salegentibacter genus 2 5 0 1 2633436 1411 no rank 1 0 species 1729720 1411 Salegentibacter sp. T436 1 0 3039 61432 no rank 0 2 species Flavobacteriaceae bacterium 3519-10 1437 531844 0 1 1150389 Flavobacteriaceae bacterium UJ101 1602 species 1 0 genus 104267 Tenacibaculum 3369 1 5 5 0 1068 Tenacibaculum jejuense 584609 species 0 1 1 0 species 107401 Tenacibaculum maritimum 859 669041 Tenacibaculum dicentrarchi 907 species 1 0 Tenacibaculum todarodis 530 1850252 species 0 1 genus 2080 286104 0 2 2615021 2080 no rank 2 0 species 1936080 1167 Winogradskyella sp. J14-2 1 0 0 1 species Winogradskyella sp. PG-2 913 754409 1 4 46 0 genus 326319 1837 Dokdonia 1 0 326320 506 Dokdonia donghaensis species no rank 1285 2615033 0 2 species 836 Dokdonia sp. 4H-3-7-5 983548 0 1 species 449 Dokdonia sp. MED134 313590 0 1 1 2 4 0 genus 291183 Lacinutrix 2394 0 1 species 770 Lacinutrix venerupis 1486034 1622 2647285 no rank 0 2 Lacinutrix sp. 5H-3-7-4 1010 983544 species 0 1 1 0 species 2057808 612 Lacinutrix sp. Bg11-31 genus 1374 2700084 0 1 0 1 Lutibacter sp. LPB0138 1374 1850246 species 104264 Cellulophaga 3208 genus 8 4 0 1 Cellulophaga baltica 1086 76594 species 0 1 species 59600 Cellulophaga algicola 994 1 0 0 1 species 1120 Cellulophaga lytica 979 genus 76831 Myroides 7143 1 116 5 0 0 1 species Myroides profundi 1059 480520 0 2 1941 2642485 no rank 943 Myroides sp. A21 1583100 species 0 1 1 0 species 1458492 Myroides sp. ZB35 998 1 0 species 76832 Myroides odoratimimus 4027 32108 Capnocytophaga 1016 genus 0 15 154 1 1 0 45243 Capnocytophaga haemolytica 1231 species 1 0 1848904 Capnocytophaga stomatis 1324 species species 1110 Capnocytophaga gingivalis 1017 0 1 0 1 1895 Capnocytophaga canimorsus 28188 species 0 1 species Capnocytophaga leadbetteri 7129 327575 0 1 species Capnocytophaga ochracea 1629 1018 no rank 2640652 14422 6 0 2038 Capnocytophaga sp. oral taxon 864 1316593 species 0 1 1316596 6594 Capnocytophaga sp. oral taxon 878 species 1 0 0 1 species 1696 Capnocytophaga sp. oral taxon 323 1705617 species Capnocytophaga sp. ChDC OS43 1791 209053 0 1 1945658 1071 Capnocytophaga sp. H4358 species 1 0 0 1 Capnocytophaga sp. H2931 1232 1945657 species species Capnocytophaga sputigena 2182 1019 0 1 0 1 species Capnocytophaga cynodegmi 1032 28189 0 1 939 1176327 genus no rank 939 2636237 0 1 1 0 2094025 Aureitalea sp. RR4-38 939 species 2 3 0 1 358023 1060 Lutibacter genus species 1622118 Lutibacter profundi 1057 1 0 genus 83612 Psychroflexus 1877 1 2 2 0 1 0 57029 1875 Psychroflexus torquis species 9 5 0 1 252356 Maribacter 4701 genus 3308 2615042 no rank 0 3 1 0 species 1836467 1476 Maribacter sp. T28 0 1 Maribacter sp. 1_2014MBL_MicDiv 1052 1644130 species 313603 Maribacter sp. HTCC2170 780 species 1 0 species Maribacter cobaltidurans 1384 1178778 0 1 1 0 16 9 genus Flavobacterium 12769 237 1404 Flavobacterium gilvum 1492737 species 0 1 species 1763534 714 Flavobacterium crassostreae 1 0 species 996 Flavobacterium columnare 2271 1 0 986 Flavobacterium johnsoniae 4174 species 1 0 1306519 Flavobacterium commune 1784 species 1 0 96345 795 Flavobacterium psychrophilum species 1 0 55197 814 Flavobacterium branchiophilum species 1 0 species 312277 797 Flavobacterium indicum 1 0 1 0 8 2 genus Robiginitalea 1895 252306 1 0 252307 Robiginitalea biformata 1887 species 1 0 5 7 genus 3085 Nonlabens 363408 species Nonlabens sediminis 764 319236 0 1 1 0 species 328515 853 Nonlabens dokdonensis 2 0 no rank 2615035 1461 0 1 674 Nonlabens sp. MB-3u-79 2058134 species species 1476901 787 Nonlabens sp. MIC269 1 0 1 0 1518147 858 genus species 1790137 858 Wenyingzhuangia fucanilytica 1 0 genus 784 336276 0 1 2615019 784 no rank 1 0 species Olleya sp. Bg11-27 784 2058135 0 1 1136 261827 genus 0 1 1 0 1736674 1136 Algibacter alginicilyticus species genus 178469 Arenibacter 1382 1 2 2 0 species 1380 Arenibacter algicola 616991 0 1 genus 745 216431 0 1 1 0 species 313588 Croceibacter atlanticus 745 1 5 9 0 genus 292691 5482 Gramella 1913577 863 Gramella sp. LPB0144 species 1 0 1003 Gramella forsetii 411153 species 0 1 0 1 species Gramella flava 1929 1486245 1 0 species 2126553 1678 Gramella sp. SH35 phylum 1134404 2528 7 0 1 7 7 0 class 795747 Ignavibacteria 2528 795748 Ignavibacteriales 2521 order 2 6 0 1 2 3 0 1 1334117 Melioribacteraceae 1228 family genus Melioribacter 1226 1134403 1 0 10 2 1134405 Melioribacter roseus 1216 species 1 0 2 0 795749 1291 family 2 16 0 1 795750 1291 Ignavibacterium genus 0 1 species Ignavibacterium album 1275 591197 889 456828 phylum 0 2 1 1 2 0 genus 456826 Candidatus Cloacimonas 889 species Candidatus Cloacimonas acidaminovorans 888 456827 0 1 0 8 5772 142182 phylum 8 39 0 1 219685 5772 Gemmatimonadetes class 1 137 7 0 order 219686 Gemmatimonadales 5733 family 219687 Gemmatimonadaceae 5596 1 56 6 0 173479 2769 Gemmatimonas genus 3 22 0 1 1 0 1379270 1159 Gemmatimonas phototrophica species 0 1 species Gemmatimonas aurantiaca 1588 173480 0 31 2 1 Gemmatirosa 2771 1706036 genus 2740 Gemmatirosa kalamazoonesis 861299 species 0 1 phylum 2909 65842 0 5 1 5 8 0 class 204430 2909 Fibrobacteria 1 0 4 5 order 2901 Fibrobacterales 218872 204431 2896 Fibrobacteraceae family 3 3 0 1 1 7 2 0 genus 832 Fibrobacter 2893 0 1 2886 Fibrobacter succinogenes 833 species 0 94 178181 1783257 clade 35 0 phylum 203682 21804 109 25 0 1 203683 Planctomycetia 17106 class order 2691355 1050 3 0 1914233 Gemmataceae 1050 family 3 3 0 1 1047 Gemmata 113 genus 0 2 4 1 1 0 no rank 2622970 1043 1 0 species 1630693 1043 Gemmata sp. SH-PL17 order 2691354 1987 3 0 1 0 family 2691358 680 0 1 680 1676125 genus 1331910 680 Thermogutta terrifontis species 1 0 family 1307 2691357 0 2 598 265488 genus 0 1 1 0 265606 Rhodopirellula baltica 598 species genus 123 709 1 0 0 1 species Pirellula staleyi 709 125 0 7 4902 2691356 order 1763524 4902 Isosphaeraceae family 7 41 0 1 genus 2633 Paludisphaera 1763521 1 0 2 49 0 1 2584 Paludisphaera borealis 1387353 species 0 2 3 1 942 Isosphaera 127 genus Isosphaera pallida 939 128 species 0 1 466152 1286 Singulisphaera genus 2 4 0 1 0 1 species 1282 Singulisphaera acidiphila 466153 0 11 245 1 9058 Planctomycetales 112 order 126 8813 Planctomycetaceae family 10 42 0 1 5528 Planctomyces 118 genus 0 3 37 1 0 2 no rank 5491 2648843 Planctomyces sp. SH-PL14 1832 1632864 species 0 1 Planctomyces sp. SH-PL62 3659 1636152 species 0 1 1936111 Fuerstia 1301 genus 14 2 0 1 species 1287 Fuerstia marisgermanicae 1891926 0 1 1 2 18 0 genus 1649480 1153 Planctopirus 0 1 Planctopirus limnophila 1135 120 species 1 2 4 0 genus 1649490 789 Rubinisphaera 119 Rubinisphaera brasiliensis 785 species 1 0 0 3 class 765 2517206 14 3 0 1 1127829 Candidatus Brocadiales 765 order 2 1 0 1 1127830 751 Candidatus Brocadiaceae family 1 0 380738 750 genus 0 1 species 750 Candidatus Kuenenia stuttgartiensis 174633 Phycisphaerae 3933 666505 class 0 21 7 1 666506 Phycisphaerales 2202 order 39 4 0 1 0 10 3 1 Phycisphaeraceae 2163 666507 family 2 25 0 1 666508 2153 Phycisphaera genus 1 0 species 547188 2128 Phycisphaera mikurensis 2 0 order 2483366 1710 family 2483367 1710 2 0 0 2 1710 2483368 genus species 802 Phycisphaerae bacterium L21-RPul-D3 1940790 0 1 0 1 species 908 Phycisphaerae bacterium ST-PulAB-D4 1941349 24 0 204428 3409 phylum 204429 3409 Chlamydiia class 24 9 0 1 2 9 0 1 1963360 Parachlamydiales 1703 order 1 0 1 2 family Simkaniaceae 226 92712 225 34093 genus 0 1 species 83561 Simkania negevensis 225 1 0 0 3 1 1 459 Waddliaceae 92714 family 1 2 1 0 genus 71666 458 Waddlia species 457 Waddlia chondrophila 71667 0 1 3 1 0 1 92713 1016 Parachlamydiaceae family genus 282132 515 1 0 1 0 389348 Candidatus Protochlamydia naegleriophila 515 species 1 0 genus 83551 500 species 500 Parachlamydia acanthamoebae 83552 0 1 order 51291 1697 Chlamydiales 1 14 6 0 0 4 13 1 Chlamydiaceae 1691 809 family 12 0 1113537 1687 no rank 810 1687 Chlamydia genus 12 93 0 1 1 0 species 1457141 Chlamydia avium 82 species Chlamydia trachomatis 151 813 0 1 species Chlamydia felis 201 83556 0 1 1 0 species 83558 116 Chlamydia pneumoniae 1 0 85991 Chlamydia pecorum 182 species species Chlamydia gallinacea 182 1457153 0 1 1 0 species 83555 139 Chlamydia abortus 1 0 species 83557 107 Chlamydia caviae 0 1 species Chlamydia psittaci 220 83554 Chlamydia muridarum 87 83560 species 0 1 127 Chlamydia suis 83559 species 0 1 0 3 phylum 14214 256845 0 3 53 1 14214 Lentisphaeria 1313211 class 278082 Victivallales 14161 order 1975 2 0 1 1 0 1674876 12186 no rank species 2094242 Victivallales bacterium CCUG 44730 12186 1 0 24 27 0 1 74201 Verrucomicrobia 137068 phylum class 414999 7860 Opitutae 1 12 155 0 Puniceicoccales 757 415001 order 0 36 4 1 0 5 3 1 Puniceicoccaceae 721 415002 family 1 0 31 2 genus Coraliomargarita 716 442430 0 1 species Coraliomargarita akajimensis 685 395922 415000 Opitutales 6948 order 170 7 0 1 family Opitutaceae 6778 134623 1 0 64 6 genus 1943 Lacunisphaera 1961799 1 0 2 67 species 1838286 Lacunisphaera limnophila 1876 1 0 1 0 278955 2966 no rank Opitutaceae bacterium TAV5 2966 794903 species 0 1 Opitutus 1805 178440 genus 0 13 2 1 1 0 species 107709 Opitutus terrae 1792 1 17 6 0 class 203494 Verrucomicrobiae 124995 order 124978 Verrucomicrobiales 48461 1 0 5 72 124906 Akkermansiaceae 1647988 family 0 4 73 1 1 0 3 26 genus 124833 Akkermansia 239934 2732 Akkermansia glycaniphila 1679444 species 0 1 1 0 species 239935 Akkermansia muciniphila 122075 0 2 93 134549 class 0 2 2 1 93 Candidatus Xiphinematobacter 134550 genus 1 0 no rank 2648876 91 Candidatus Xiphinematobacter sp. Idaho Grape 91 1704307 species 0 1 2 0 no rank 417295 3274 1 0 species 1637999 Verrucomicrobia bacterium IMCC26134 1608 species Verrucomicrobia bacterium 1666 2026799 0 1 class Methylacidiphilae 822 1955630 1 0 1 4 0 3 821 717963 order 0 3 821 717964 family genus 821 Methylacidiphilum 511745 1 0 3 1 562 Methylacidiphilum infernorum 511746 species 0 1 0 1 species Methylacidiphilum fumariolicum 258 591154 phylum 134625 1686 5 0 Kiritimatiellae 1686 1921781 class 0 17 5 1 0 4 6 1 1669 Kiritimatiellales 1921782 order 0 2 3 1 Kiritimatiellaceae 1663 1921783 family Kiritimatiella 1661 1921784 genus 0 39 2 1 species 1622 Kiritimatiella glycovorans 1307763 0 1 no rank 2323 951 2 0 1783234 951 clade 2 0 0 1 426 95818 phylum no rank 426 1895827 0 1 1 0 2056494 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 426 species clade 95901 525 1 0 525 2497643 class 0 1 0 1 525 2497644 order 1 0 2497645 525 family 1 0 1551504 525 genus 673862 525 Candidatus Babela massiliensis species 1 0 57723 14479 Acidobacteria phylum 21 1 0 1 class 204432 13284 Acidobacteriia 1 17 94 0 0 120 12 1 Acidobacteriales 10228 204433 order 0 11 143 1 10108 Acidobacteriaceae 204434 family 21 3 0 1 940557 Granulicella 2960 genus 1 0 940615 1490 Granulicella tundricola species 1 0 940614 1449 Granulicella mallensis species 1 2 13 0 genus 33973 1952 Acidobacterium 33075 Acidobacterium capsulatum 1939 species 1 0 1 2 28 0 genus 658061 1561 Candidatus Koribacter 0 1 species Candidatus Koribacter versatilis 1533 658062 1 0 17 3 genus Terriglobus 3492 392733 2028 Terriglobus roseus 392734 species 0 1 0 1 1447 Terriglobus saanensis 870903 species order Solibacterales 2962 332160 1 0 63 4 Solibacteraceae 2899 332161 family 0 19 3 1 1 2 8 0 genus 332162 2880 Candidatus Solibacter 332163 2872 Candidatus Solibacter usitatus species 1 0 1 1 3 0 class 1562566 Blastocatellia 1194 458032 Chloracidobacterium 1193 genus 14 2 0 1 species 1179 Chloracidobacterium thermophilum 458033 0 1 phylum 3810 200930 0 8 0 8 9 1 3810 Deferribacteres 68337 class order 3801 Deferribacterales 191393 1 0 7 45 191394 Deferribacteraceae 3756 family 20 6 0 1 genus 746 2351 0 1 0 1 species Flexistipes sinusarabici 746 2352 1 0 genus 53572 959 0 1 959 Deferribacter desulfuricans 197162 species 0 2 2 1 1259 Denitrovibrio 117999 genus species Denitrovibrio acetiphilus 1257 118000 0 1 genus 545865 772 1 0 species Calditerrivibrio nitroreducens 772 477976 0 1 0 11 8066 508458 phylum class 649775 8066 Synergistia 1 11 31 0 1 53 10 0 order 649776 Synergistales 8035 family Synergistaceae 7982 649777 1 0 102 9 1 0 336260 621 genus 621 Thermovirga lienii 336261 species 0 1 1 4 2 0 genus 49894 Acetomicrobium 529 species 525 Acetomicrobium mobile 97477 0 1 1 2 4 0 genus 508459 4990 Cloacibacillus species 1197717 4986 Cloacibacillus porcorum 1 0 genus 81466 437 1 0 Aminobacterium colombiense 437 81468 species 0 1 genus 1303 Thermanaerovibrio 81461 1 0 2 16 species Thermanaerovibrio acidaminovorans 1287 81462 0 1 phylum 1224 2658069 Proteobacteria 1 2009 1170 0 347 1376 0 1 28216 571603 Betaproteobacteria class 0 43 192 1 23412 Nitrosomonadales 32003 order 90627 3104 Gallionellaceae family 5 70 0 1 1 66 2 0 genus 314343 Sideroxydans 1812 0 1 species Sideroxydans lithotrophicus 1746 63745 1 2 25 0 genus 96 1222 Gallionella 1 0 370405 1197 Gallionella capsiferriformans species 0 5 117 1 4529 Sterolibacteriaceae 2008793 family genus 1054211 Sulfuritalea 2373 1 71 2 0 1 0 species 748811 Sulfuritalea hydrogenivorans 2302 378210 Methyloversatilis 2039 genus 10 2 0 1 2029 2639971 no rank 0 1 1 0 species 1842540 2029 Methyloversatilis sp. RAC08 0 4 family 2403 2772226 genus 1778653 1234 Sulfuriferula 1 2 20 0 0 1 no rank 1214 2637784 1 0 species 1985873 Sulfuriferula sp. AH1 1214 0 2 71 1 1169 Sulfuricella 935200 genus species Sulfuricella denitrificans 1098 649841 0 1 family 2008790 Thiobacillaceae 1063 1 19 3 0 2 10 0 1 919 1044 Thiobacillus genus 1 0 36861 Thiobacillus denitrificans 1034 species family 5303 Methylophilaceae 32011 1 0 13 50 0 3 8 1 941 Methylotenera 359407 genus 1 0 1055487 Methylotenera versatilis 504 species 1 0 359408 Methylotenera mobilis 429 species 0 5 2 1 Methylophilus 552 16 genus no rank 547 2630143 0 1 1 0 1662285 547 Methylophilus sp. TWE2 species 1 0 2 1 genus 929 Methylobacillus 404 0 1 928 Methylobacillus flagellatus 405 species 886 1679002 genus 0 2 species 349 Candidatus Methylopumilus turicensis 1581680 0 1 species 537 Candidatus Methylopumilus planktonicus 1581557 0 1 0 48 3 1 Methylovorus 1945 81682 genus 1 0 no rank 2634027 914 1 0 species 887061 Methylovorus sp. MP688 914 1 0 species 266009 Methylovorus glucosotrophus 983 206379 6818 Nitrosomonadaceae family 12 55 0 1 18 7 0 1 914 Nitrosomonas 4065 genus species 44577 707 Nitrosomonas ureae 1 0 species 789 Nitrosomonas eutropha 916 0 1 2 0 no rank 2609265 1057 1 0 species 153948 466 Nitrosomonas sp. AL212 species 261292 591 Nitrosomonas sp. Is79A3 1 0 0 1 Nitrosomonas europaea 1036 915 species 0 1 species 458 Nitrosomonas communis 44574 35798 2698 Nitrosospira genus 4 19 0 1 948 Nitrosospira briensis 35799 species 0 1 1 0 1288494 Nitrosospira lacus 867 species 1 0 species 1231 864 Nitrosospira multiformis 2229 33809 no rank 0 2 species 1913 Betaproteobacteria bacterium GR16-43 1904640 0 1 beta proteobacterium CB 316 543913 species 0 1 Burkholderiales 463438 80840 order 0 5500 232 1 no rank 80841 10045 2 0 1 0 1469502 914 Burkholderiales bacterium GJ-E10 species 1 0 1834205 Burkholderiales bacterium YL45 9131 species family 506 89933 Alcaligenaceae 1 40 645 0 genus 305976 1320 1 0 1 0 no rank 2640016 1320 0 1 species 1320 Pusillimonas sp. T7-7 1007105 1227 17 0 1 517 Bordetella 39227 genus 0 1 Bordetella bronchiseptica 4756 518 species 0 1 Bordetella bronchialis 2964 463025 species 0 1 species 2137 Bordetella trematum 123899 0 1 species Bordetella flabilis 2031 463014 no rank 2422 2630031 0 1 1697043 2422 Bordetella sp. H567 species 1 0 0 1 Bordetella avium 1378 521 species 103855 2438 Bordetella hinzii species 1 0 Bordetella pertussis 1838 520 species 0 1 463024 2358 Bordetella genomosp. 6 species 1 0 1 0 species 1416803 2315 Bordetella genomosp. 9 0 1 species Bordetella parapertussis 2285 519 1083 Bordetella holmesii 35814 species 0 1 1331258 Bordetella pseudohinzii 2641 species 1 0 1 0 463040 2434 Bordetella genomosp. 13 species species 94624 Bordetella petrii 2327 1 0 species 2593 Bordetella genomosp. 8 1416806 0 1 1100891 481 genus 1 0 643674 Paenalcaligenes hominis 481 species 1 0 Achromobacter 33506 222 genus 0 995 6 1 species 32002 7222 Achromobacter denitrificans 1 0 1 0 2626865 3494 no rank 0 1 3494 Achromobacter sp. AONIH1 1758194 species 0 1 Achromobacter spanius 5782 217203 species 1 0 species 217204 2801 Achromobacter insolitus species Achromobacter xylosoxidans 13212 85698 0 1 0 1 951 1472344 genus 0 1 species Basilea psittacipulmonis 951 1472345 1 0 2 89 genus 3270 Orrella 1921582 Orrella dioscoreae 3181 1851544 species 0 1 1 0 2 28 genus 2637 Alcaligenes 507 Alcaligenes faecalis 2609 511 species 0 1 1 2 10 0 genus 90243 592 Oligella 0 1 582 Oligella urethralis 90245 species genus 359336 Castellaniella 3387 1 184 2 0 species Castellaniella defragrans 3203 75697 0 1 genus 290425 2465 Advenella 1 3 34 0 1 0 species 302406 Advenella mimigardefordensis 1355 0 1 species 1076 Advenella kashmirensis 310575 genus 29574 1452 2 0 species 84590 Taylorella asinigenitalis 1090 1 0 0 1 362 Taylorella equigenitalis 29575 species 1 2224 59 0 family 80864 Comamonadaceae 118462 genus 1649468 2571 Melaminivora 1 2 73 0 1 0 no rank 2641902 2498 1 0 2109913 2498 Melaminivora sp. SC2-9 species 283 Comamonas 9927 genus 27 4 0 1 species 225992 Comamonas kerstersii 2758 1 0 species 4697 Comamonas testosteroni 285 0 1 Comamonas serinivorans 2445 1082851 species 0 1 2 0 2490452 3003 genus species Comamonadaceae bacterium B1 1603 1458426 0 1 species 1400 Comamonadaceae bacterium A1 1458425 0 1 1041 Candidatus Symbiobacter 1436289 genus 0 2 8 1 species 1033 Candidatus Symbiobacter mobilis 1436290 0 1 1 0 7 2 genus Diaphorobacter 2703 238749 1 0 1546149 Diaphorobacter polyhydroxybutyrativorans 2696 species 1 2 3 0 genus 364316 2097 Verminephrobacter 0 1 species 2094 Verminephrobacter eiseniae 364317 genus 4747 Ottowia 219181 1 0 3 75 1 0 2109914 Ottowia sp. KADR8-3 2714 species 2645081 1958 no rank 1 0 1 0 1658672 Ottowia sp. oral taxon 894 1958 species genus 201096 Alicycliphilus 3590 1 27 2 0 3563 Alicycliphilus denitrificans 179636 species 0 1 665874 Limnohabitans 2276 genus 11 3 0 1 2265 2626134 no rank 0 2 914 Limnohabitans sp. 103DPR2 1678129 species 0 1 1678128 1351 Limnohabitans sp. 63ED37-2 species 1 0 47420 Hydrogenophaga 7401 genus 166 4 0 1 0 1 1900 Hydrogenophaga crassostreae 1763535 species 5335 2610897 no rank 0 2 1 0 species 795665 3335 Hydrogenophaga sp. PBC 0 1 Hydrogenophaga sp. RAC07 2000 1842537 species 0 1 genus 2476 2678886 Melaminivora sp. SC2-7 2476 2116657 species 0 1 0 5 350 1 16144 Variovorax 34072 genus 1 0 436515 3167 Variovorax boronicumulans species Variovorax paradoxus 6791 34073 species 0 1 663243 5836 no rank 2 0 0 1 species 1598 Variovorax sp. PAMC 28711 1795631 1 0 species 2126319 4238 Variovorax sp. PMC12 1 0 30 2 genus Simplicispira 1750 352450 1 0 species 2109915 1720 Simplicispira sp. SC1-8 1 0 114 5 genus Rhodoferax 8678 28065 1842727 Rhodoferax koreense 2688 species 1 0 2152 Rhodoferax antarcticus 81479 species 0 1 1 0 species 1484693 2037 Rhodoferax saidenbachensis 1 0 192843 Rhodoferax ferrireducens 1687 species 1 0 56 3 genus Polaromonas 4904 52972 0 1 species Polaromonas naphthalenivorans 2430 216465 no rank 2638319 2418 1 0 0 1 Polaromonas sp. JS666 2418 296591 species 36 2 0 1 174951 Ramlibacter 5553 genus 1 0 94132 Ramlibacter tataouinensis 5517 species 16148 Delftia 80865 genus 0 5 567 1 species 180282 Delftia tsuruhatensis 4073 1 0 species 3559 Delftia acidovorans 80866 0 1 no rank 7949 2613839 0 2 species 3633 Delftia sp. HK171 1920191 0 1 Delftia sp. Cs1-4 4316 742013 species 0 1 12916 21229 Acidovorax genus 9 781 0 1 1 0 553814 Acidovorax sp. NA3 1850 species Acidovorax citrulli 2434 80869 species 0 1 no rank 10878 2684926 0 4 1 0 1842533 2765 Acidovorax sp. RAC01 species species Acidovorax sp. T1 2271 1858609 0 1 species 232721 2584 Acidovorax sp. JS42 1 0 species 358220 3258 Acidovorax sp. KKS102 1 0 species Acidovorax ebreus 2437 721785 0 1 1 0 80867 2849 Acidovorax avenae species 1 0 598 29 family Oxalobacteraceae 52773 75682 4 130 0 1 202907 7945 Collimonas genus Collimonas pratensis 2816 279113 species 0 1 0 1 2576 Collimonas arenae 279058 species species 158899 Collimonas fungivorans 2423 1 0 genus 1509 Herminiimonas 303379 1 0 3 20 1 0 1809410 Herminiimonas arsenitoxidans 779 species 1 0 species 204773 Herminiimonas arsenicoxydans 710 1528 Oxalobacter 846 genus 0 2 1 1 species Oxalobacter formigenes 1527 847 0 1 1 0 452 6 genus Herbaspirillum 13138 963 1 0 species 92645 3632 Herbaspirillum frisingense species 964 Herbaspirillum seropedicae 3129 1 0 species 341045 Herbaspirillum hiltneri 1997 1 0 0 1 no rank 1453 2624150 species 2025949 1453 Herbaspirillum sp. meg3 1 0 Herbaspirillum rubrisubalbicans 2475 80842 species 0 1 1 7 133 0 genus 29580 12361 Janthinobacterium 368607 Janthinobacterium svalbardensis 2681 species 1 0 7711 2610881 no rank 0 4 species 1644131 3097 Janthinobacterium sp. 1_2014MBL_MicDiv 1 0 species 1938606 2698 Janthinobacterium sp. LM6 1 0 species Janthinobacterium sp. Marseille 986 375286 0 1 1 0 1236179 Janthinobacterium sp. B9-8 930 species species 55508 1836 Janthinobacterium agaricidamnosum 1 0 genus Massilia 15694 149698 1 0 309 6 0 1 species 2955 Massilia sp. B2 2045208 no rank 2609279 6179 2 0 species 1707785 2739 Massilia sp. WG5 1 0 0 1 3440 Massilia sp. NR 4-1 1678028 species 0 1 species Massilia putida 2635 1141883 1 0 species 2072590 3616 Massilia sp. ZMN-3 26402 224471 no rank 0 17 169 2 0 1 212743 Rhizobacter 2737 genus 0 1 species 2568 Rhizobacter gummiphilus 946333 species 413882 2403 [Polyangium] brachysporum 1 0 genus 32012 2914 Thiomonas 1 2 63 0 Thiomonas intermedia 2851 926 species 0 1 153 2 0 1 28067 Rubrivivax 3438 genus 28068 Rubrivivax gelatinosus 3285 species 1 0 65047 3171 Mitsuaria genus 2 182 0 1 2989 2648776 no rank 0 1 1 0 1658665 Mitsuaria sp. 7 2989 species 148 2 0 1 318147 Paucibacter 2766 genus 1 0 no rank 2642959 2618 0 1 species Paucibacter sp. KCTC 42545 2618 1768242 1 56 2 0 genus 88 Leptothrix 2892 1 0 species 34029 Leptothrix cholodnii 2836 2 134 0 1 93681 3743 Roseateles genus 0 1 species Roseateles depolymerans 3609 76731 316612 Methylibium 2338 genus 34 2 0 1 0 1 species 2304 Methylibium petroleiphilum 105560 1 1087 84 0 family 119060 Burkholderiaceae 160323 1 0 5 454 genus 18927 Ralstonia 48736 Ralstonia insidiosa 2657 190721 species 0 1 105219 2636 Ralstonia mannitolilytica species 1 0 species 305 Ralstonia solanacearum 8994 1 0 species 329 4186 Ralstonia pickettii 1 0 genus 25349 Cupriavidus 106589 1 0 9 1027 0 1 species Cupriavidus necator 5028 106590 species 367825 3381 Cupriavidus sp. USMAA1020 1 0 0 1 species Cupriavidus basilensis 2894 68895 0 1 2140 Cupriavidus metallidurans 119219 species 0 1 species Cupriavidus gilardii 2053 82541 no rank 2640874 6976 2 0 876364 3619 Cupriavidus sp. USMAA2-4 species 1 0 1 0 species 1389192 3357 Cupriavidus sp. USMAHM13 248026 1850 Cupriavidus pinatubonensis species 1 0 0 12 459 1 19599 Paraburkholderia 1822464 genus 0 1 species 1655 Paraburkholderia aromaticivorans 2026199 species 2030 Paraburkholderia hospita 169430 0 1 1 0 species 311230 1618 Paraburkholderia terrae 261302 Paraburkholderia phytofirmans 1695 species 1 0 75105 2664 Paraburkholderia caribensis species 1 0 1 0 148447 Paraburkholderia phymatum 1693 species species 1860 Paraburkholderia sprentiae 948107 0 1 1 0 2615204 1158 no rank 0 1 species Paraburkholderia sp. SOS3 1158 1926494 species 252970 1548 Paraburkholderia phenoliruptrix 1 0 0 1 1670 Paraburkholderia fungorum 134537 species 0 1 species 1549 Paraburkholderia xenovorans 36873 10 386 0 1 93217 13542 Pandoraea genus 1 0 species 656179 Pandoraea faecigallinarum 1223 species 93218 Pandoraea apista 1402 1 0 species Pandoraea vervacti 1388 656178 0 1 93222 Pandoraea sputorum 1353 species 1 0 Pandoraea oxalativorans 1743 573737 species 0 1 1 0 species 93221 Pandoraea pulmonicola 1510 445709 1227 Pandoraea thiooxydans species 1 0 1575 Pandoraea norimbergensis 93219 species 0 1 93220 Pandoraea pnomenusa 1735 species 1 0 1 0 1827195 1500 genus 1 0 758793 1500 Burkholderia sp. RPE64 species 32008 78510 Burkholderia genus 41 3968 0 1 species group 39947 87882 0 19 1 0 species 488446 Burkholderia latens 1026 Burkholderia ambifaria 1830 152480 species 0 1 species 1503054 Burkholderia stagnalis 1059 1 0 488729 966 Burkholderia metallica species 1 0 0 1 species 1481 Burkholderia contaminans 488447 0 1 species Burkholderia vietnamiensis 1847 60552 species 1011 Burkholderia seminalis 488731 0 1 265293 [Pseudomonas] mesoacidophila 1333 species 1 0 1 0 species 1503055 803 Burkholderia territorii species 1047 Burkholderia pyrrocinia 60550 0 1 species 152500 996 Burkholderia dolosa 1 0 0 1 species Burkholderia ubonensis 3620 101571 1 0 87883 3257 Burkholderia multivorans species 1 0 species 488732 903 Burkholderia diffusa species 1739 Burkholderia stabilis 95485 0 1 species Burkholderia cepacia 6504 292 0 1 0 1 2093 Burkholderia lata 482957 species 95486 Burkholderia cenocepacia 6272 species 1 0 0 1 2160 Burkholderia pseudomultivorans 1207504 species 4158 Burkholderia gladioli 28095 species 0 1 0 11 13545 2613784 no rank 1184 Burkholderia sp. KJ006 416344 species 0 1 species 1123 Burkholderia sp. Bp7605 1740163 0 1 Burkholderia sp. CCGE1001 1277 640510 species 0 1 Burkholderia sp. RPE67 1728 758796 species 0 1 species 1795043 1059 Burkholderia sp. PAMC 26561 1 0 0 1 species 1134 Burkholderia sp. PAMC 28687 1795874 species 1468409 Burkholderia sp. 2002721687 906 1 0 0 1 species Burkholderia sp. CCGE1003 1136 640512 0 1 1762 Burkholderia sp. YI23 1097668 species 0 1 894 Burkholderia sp. Bp5365 1740162 species 0 1 species 1342 Burkholderia sp. HB1 1678678 7 0 111527 10732 species group 0 1 species 2360 Burkholderia thailandensis 57975 1 0 28450 Burkholderia pseudomallei 2825 species 0 1 1086 Burkholderia sp. MSMB0852 1637841 species 13373 880 Burkholderia mallei species 1 0 1 0 342113 1602 Burkholderia oklahomensis species 0 1 Burkholderia sp. MSMB617WGS 859 1637831 species 1 0 species 1637837 1120 Burkholderia sp. MSMB0266 0 1 species Burkholderia glumae 3805 337 0 1 Burkholderia plantarii 2355 41899 species 0 5 4 1 Polynucleobacter 1002 44013 genus 0 1 Polynucleobacter asymbioticus 364 576611 species species 1835254 338 Polynucleobacter duraquae 1 0 species 295 Polynucleobacter necessarius 576610 0 1 genus 2571159 807 1 0 species 807 Paraburkholderia rhizoxinica 412963 0 1 Rhodocyclales 28752 206389 order 0 473 22 1 211 6 0 1 75787 Rhodocyclaceae 7199 family no rank 75788 1779 1 0 species 1779 Rhodocyclaceae bacterium 1898103 0 1 genus Aromatoleum 1530 551759 1 0 45 2 species Aromatoleum aromaticum 1485 551760 0 1 106 2 0 1 146937 Azospira 3679 genus species Azospira oryzae 3573 146939 0 1 0 3 21 1 1739 Azonexaceae 2008795 family 1 2 38 0 genus 73029 1718 Dechloromonas 0 1 species Dechloromonas aromatica 1680 259537 family 19341 Zoogloeaceae 2008794 1 0 12 513 1 270 6 0 genus 33057 Thauera 10996 0 2 5428 2609274 no rank 1 0 2005884 Thauera sp. K11 2744 species 85643 Thauera sp. MZ1T 2684 species 1 0 species 1134435 Thauera humireducens 2152 1 0 species 59405 Thauera aromatica 1557 1 0 species 96773 1589 Thauera chlorobenzoica 1 0 5 291 0 1 12960 7832 Azoarcus genus 2 0 2629479 4343 no rank 748247 2003 Azoarcus sp. KH32C species 1 0 species 2340 Azoarcus sp. CIB 198107 0 1 0 1 species 1647 Azoarcus sp. SY39 2067960 0 1 Azoarcus olearius 1551 418699 species 1 0 641 36 order Neisseriales 48770 206351 Chromobacteriaceae 22547 1499392 family 0 351 13 1 11684 90153 no rank 0 4 0 193 4 1 Chromobacterium 11684 535 genus 1 0 2641838 3200 no rank 0 1 species 3200 Chromobacterium sp. ATCC 53434 2059672 0 1 Chromobacterium violaceum 4029 536 species 1 0 species 1108595 Chromobacterium vaccinii 4262 2787 Laribacter 168470 genus 0 2 27 1 168471 Laribacter hongkongensis 2760 species 1 0 885864 Jeongeupia 1817 genus 68 2 0 1 0 1 no rank 1749 2619593 species Jeongeupia sp. USM3 1749 1906741 0 1 genus 2460 Aquaspirillum 187 1 0 2 40 no rank 2620219 2420 1 0 1 0 species 1938604 Aquaspirillum sp. LM1 2420 genus 568394 3448 Pseudogulbenkiania 1 2 49 0 1 0 2642558 3399 no rank species Pseudogulbenkiania sp. NH8B 3399 748280 0 1 1 22 244 0 family 481 25582 Neisseriaceae 497 421605 no rank 0 1 1 0 species 2052837 497 Neisseriaceae bacterium DSM 100970 0 1 547 71 genus species 72 547 Simonsiella muelleri 1 0 1 0 12 280 genus 19541 Neisseria 482 28091 Neisseria weaveri 1924 species 1 0 1 0 326523 2239 Neisseria zoodegmatis species species 495 1002 Neisseria elongata 1 0 1 0 1853278 Neisseria sp. 10023 1595 species 487 3649 Neisseria meningitidis species 1 0 Neisseria mucosa 1136 488 species 0 1 no rank 2623750 3406 2 0 species Neisseria sp. 10022 864 1853276 0 1 0 1 2542 Neisseria sp. KEM232 655307 species 0 1 1460 Neisseria gonorrhoeae 485 species 1 0 species 486 1673 Neisseria lactamica Neisseria sicca 1177 490 species 0 1 genus 2146 Vitreoscilla 59 1 0 3 57 no rank 448 2627922 0 1 species 96942 Vitreoscilla sp. C1 448 1 0 1 0 species 63 Vitreoscilla filiformis 1641 0 2 2 1 Eikenella 1771 538 genus 1 0 539 1769 Eikenella corrodens species 1 0 2 2 genus Snodgrassella 836 1193515 species Snodgrassella alvi 834 1196083 0 1 11 0 119066 3626 no rank genus 1563 Candidatus Accumulibacter 327159 1 0 2 35 0 1 species 1528 Candidatus Accumulibacter phosphatis 327160 6 29 0 1 33055 1793 Kinetoplastibacterium genus species 233181 Kinetoplastibacterium blastocrithidii 167 1 0 354 Candidatus Kinetoplastibacterium galatii 994695 species 0 1 Candidatus Kinetoplastibacterium desouzaii 499 994692 species 0 1 species 523 Candidatus Kinetoplastibacterium crithidii 33056 0 1 species 994696 Candidatus Kinetoplastibacterium oncopeltii 221 1 0 genus 20 189384 0 1 1 0 species 189385 20 Candidatus Tremblaya princeps 162 1301080 genus 0 1 species 1160784 Candidatus Nasuia deltocephalinicola 162 1 0 1 0 1381133 88 genus 88 Candidatus Profftella armatura 669502 species 0 1 0 2341 557 1 Alphaproteobacteria 624532 28211 class 1001 Magnetococcales 1191478 order 0 3 3 1 2 6 0 1 1191479 998 Magnetococcaceae family genus 162171 992 1 0 1124597 Magnetococcus marinus 992 species 1 0 0 1016 66 1 Rhodospirillales 97158 204441 order family 37211 Acetobacteraceae 433 1 0 35 698 1 0 2 26 genus 923 Neoasaia 320496 1 0 species 320497 897 Neoasaia chiangmaiensis genus 364409 3362 Granulibacter 1 2 99 0 species 364410 Granulibacter bethesdensis 3263 1 0 genus Kozakia 1055 153497 1 0 5 2 1 0 species 153496 Kozakia baliensis 1050 8 142 0 1 434 9238 Acetobacter genus 438 Acetobacter pasteurianus 2614 species 1 0 species 1633874 Acetobacter oryzifermentans 687 1 0 0 1 species 1303 Acetobacter tropicalis 104102 1 0 65959 774 Acetobacter pomorum species 0 1 subgenus 1319 151157 1 0 species 435 Acetobacter aceti 1319 0 1 Acetobacter persici 1114 1076596 species 0 1 species Acetobacter senegalensis 1285 446692 522 Acidiphilium 2404 genus 137 3 0 1 species 524 Acidiphilium cryptum 1158 1 0 species 62140 1109 Acidiphilium multivorum 1 0 125216 Roseomonas 5785 genus 166 3 0 1 2695 Roseomonas gilardii 257708 species 0 1 2924 2617492 no rank 0 1 species 2924 Roseomonas sp. FDAARGOS_362 2018065 0 1 0 12 2 1 Asaia 830 91914 genus species Asaia bogorensis 818 91915 0 1 1 3 21 0 genus 441 3046 Gluconobacter 1 0 species 318683 Gluconobacter albidus 1098 species 442 1927 Gluconobacter oxydans 1 0 1 179 5 0 genus 1434011 Komagataeibacter 6529 1 0 265960 1171 Komagataeibacter nataicola species 33995 1097 Komagataeibacter europaeus species 1 0 28448 3103 Komagataeibacter xylinus species 1 0 1177712 Komagataeibacter medellinensis 979 species 1 0 genus 1602345 1490 Parasaccharibacter 1 2 9 0 1481 Parasaccharibacter apium 1510841 species 0 1 1 2 24 0 genus 89583 1851 Gluconacetobacter 0 1 species Gluconacetobacter diazotrophicus 1827 33996 0 1053 30 1 Rhodospirillaceae 58931 41295 family genus Haematospirillum 594 1804663 1 0 6 2 0 1 588 Haematospirillum jordaniae 1549855 species 1 0 20 2 genus Nitrospirillum 4883 1543705 1 0 species 28077 Nitrospirillum amazonense 4863 45 2 0 1 1543704 Niveispirillum 2815 genus 1 0 1612173 2770 Niveispirillum cyanobacteriorum species 1 110 3 0 genus 1081 Rhodospirillum 5411 1 0 species 1085 Rhodospirillum rubrum 1999 0 1 species Rhodospirillum centenum 3302 34018 401 5 0 1 191 Azospirillum 21255 genus species 192 6810 Azospirillum brasilense 1 0 1226968 1934 Azospirillum humicireducens species 1 0 1 0 528244 Azospirillum thiophilum 4732 species 0 1 species 7378 Azospirillum lipoferum 193 1 0 3 35 genus 3013 Thalassospira 168934 1 0 2048283 Thalassospira sp. CSC3H3 1620 species species Thalassospira xiamenensis 1358 220697 0 1 370 1263978 genus 0 1 1263979 370 Candidatus Endolissoclinum faulkneri species 1 0 1 0 79 2 genus Tistrella 3014 171436 1 0 171437 Tistrella mobilis 2935 species 1182780 Magnetospira 1427 genus 3 2 0 1 2685734 1424 no rank 1 0 1 0 species 1288970 Magnetospira sp. QH-2 1424 1 0 5 244 genus 13494 Magnetospirillum 13134 1 0 55518 Magnetospirillum gryphiswaldense 3697 species 1 0 species 84159 Magnetospirillum magneticum 3128 2 0 2617991 6425 no rank 0 1 Magnetospirillum sp. XM-1 3316 1663591 species species 1639348 Magnetospirillum sp. ME-1 3109 1 0 0 27 2 1 Pararhodospirillum 1602 1612157 genus 1084 Pararhodospirillum photometricum 1575 species 1 0 1 0 54 18 order 11165 Rickettsiales 766 942 Anaplasmataceae 4474 family 14 23 0 1 tribe 1736 952 0 8 0 26 8 1 Wolbachia 1736 953 genus no rank 2640676 1710 7 0 species 163164 Wolbachia endosymbiont of Drosophila melanogaster 178 1 0 100901 Wolbachia endosymbiont of Onchocerca ochengi 296 species 1 0 0 1 251 Wolbachia endosymbiont of Cimex lectularius 246273 species 0 1 168 Wolbachia endosymbiont of Brugia malayi 80849 species 213 Wolbachia endosymbiont of Onchocerca volvulus 77551 species 0 1 Wolbachia sp. wRi 159 66084 species 0 1 77038 Wolbachia endosymbiont of Drosophila simulans 445 species 1 0 1 6 4 0 genus 943 1791 Ehrlichia 4 0 106178 1550 species group 300 Ehrlichia canis 944 species 0 1 1 0 species 779 Ehrlichia ruminantium 386 945 Ehrlichia chaffeensis 524 species 1 0 340 Ehrlichia muris 35795 species 0 1 no rank 106181 237 1 0 0 1 237 Ehrlichia sp. HF 391036 species 1 4 0 1 33993 Neorickettsia 450 genus 1 0 species 951 110 Neorickettsia sennetsu 161 Neorickettsia risticii 950 species 0 1 178 Neorickettsia helminthoeca 33994 species 0 1 1 1 4 0 genus 768 Anaplasma 483 1 0 770 Anaplasma marginale 105 species 0 1 86 Anaplasma centrale 769 species 1 0 species group 106179 291 1 0 species 948 Anaplasma phagocytophilum 291 27 7 0 1 775 5990 Rickettsiaceae family tribe 33988 5589 25 0 1 23 564 0 genus 780 4758 Rickettsia species group 727 1129742 0 2 species 185 Rickettsia canadensis 788 0 1 1 0 33990 542 Rickettsia bellii species 114277 2126 species group 17 0 1 0 42862 Rickettsia felis 437 species 1 0 35791 60 Rickettsia massiliae species 781 68 Rickettsia conorii species 1 0 47589 Rickettsia peacockii 114 species 1 0 33991 95 Rickettsia montanensis species 1 0 1 0 35788 Rickettsia africae 53 species 408 Rickettsia australis 787 species 0 1 1 0 species 1105106 40 Rickettsia philipii 109232 296 Rickettsia monacensis species 1 0 0 1 species 65 Rickettsia rickettsii 783 0 1 species Rickettsia akari 164 786 Rickettsia parkeri 65 35792 species 0 1 Rickettsia amblyommatis 138 33989 species 0 1 species 226665 Rickettsia heilongjiangensis 11 1 0 0 1 species 19 Rickettsia slovaca 35794 14 Rickettsia japonica 35790 species 0 1 Rickettsia rhipicephali 79 33992 species 0 1 no rank 320 114295 0 1 0 1 Rickettsia endosymbiont of Bemisia tabaci 320 337479 species 1021 114292 species group 0 2 Rickettsia prowazekii 496 782 species 0 1 785 Rickettsia typhi 525 species 1 0 1 0 1 2 genus Orientia 831 69474 0 1 Orientia tsutsugamushi 830 784 species 0 1 394 2115980 genus species 2115978 Candidatus Phycorickettsia trachydisci 394 1 0 1 0 1699067 473 no rank species 1528098 473 Rickettsiales bacterium Ac37b 1 0 family 1328881 Candidatus Midichloriaceae 210 1 4 2 0 206 411566 genus 0 1 1 0 234827 Candidatus Midichloria mitochondrii 206 species order 94654 Sphingomonadales 204457 1 0 82 824 0 1157 59 1 Sphingomonadaceae 73915 41297 family 0 15 550 1 21301 Sphingobium 165695 genus 1114 Sphingobium herbicidovorans 76947 species 0 1 6 0 2611147 8453 no rank species 407020 1257 Sphingobium sp. MI1205 1 0 species 1843368 1637 Sphingobium sp. RAC03 1 0 1 0 484429 Sphingobium sp. YBL2 1774 species species 1239 Sphingobium sp. SYK-6 627192 0 1 1315974 Sphingobium sp. TKS 1644 species 1 0 1 0 species 1855519 902 Sphingobium sp. EP60837 1 0 1332080 1336 Sphingobium baderi species 1673076 Sphingobium hydrophobicum 1706 species 1 0 1 0 species 13690 1791 Sphingobium yanoikuyae species 1532 Sphingobium japonicum 332056 0 1 0 1 species Sphingobium chlorophenolicum 1691 46429 1 0 species 120107 1451 Sphingobium cloacae 0 1 1677 Sphingobium indicum 332055 species genus Sphingomonas 23682 13687 1 0 620 15 species 1723 Sphingomonas taxi 1549858 0 1 0 1 species 1803 Sphingomonas melonis 152682 1 0 1609977 1214 Sphingomonas hengshuiensis species 160791 4133 Sphingomonas wittichii species 2 2104 0 1 0 1 strain Sphingomonas sp. DC-6 2029 1283312 6 0 no rank 196159 9215 species 1961362 1600 Sphingomonas sp. NIC1 1 0 0 1 Sphingomonas sp. KC8 1204 1030157 species 0 1 species 1974 Sphingomonas sp. LK11 1390395 0 1 species Sphingomonas sp. LM7 1236 1938607 0 1 1938 Sphingomonas sp. MM-1 745310 species 1327635 Sphingomonas sp. Cra20 1263 species 1 0 1391 Sphingomonas koreensis 93064 species 0 1 species 1560345 Sphingomonas panacis 1563 1 0 0 1 species 2020 Sphingomonas sanxanigenens 397260 genus 150203 Blastomonas 1386 1 11 2 0 no rank 2626550 1375 1 0 1 0 species 1842535 Blastomonas sp. RAC04 1375 0 3 43 1 2102 Sphingorhabdus 1434046 genus 0 2 no rank 2059 2614947 1 0 1806885 Sphingorhabdus sp. M41 906 species species 2077182 Sphingorhabdus sp. YGSMI21 1153 1 0 genus 2709685 847 1 0 1 0 species 266812 847 Sphingorhabdus flavimaris 2685927 1351 genus 1 0 0 1 1351 Sphingomonas sp. JJ-A5 1921510 species 1 2 17 0 genus 1649486 1617 Rhizorhabdus 0 1 species Rhizorhabdus dicambivorans 1600 1850238 Novosphingobium 6645 165696 genus 0 92 5 1 0 1 no rank 1517 2644732 Novosphingobium sp. PP1Y 1517 702113 species 0 1 species 1905 Novosphingobium resinovorum 158500 0 1 48935 Novosphingobium aromaticivorans 1467 species 1 0 0 1 species Novosphingobium pentaromativorans 1664 205844 Sphingopyxis 11118 165697 genus 0 284 10 1 1 0 species 33052 Sphingopyxis terrae 921 3886 2614943 no rank 0 4 0 1 639 Sphingopyxis sp. LPB0140 1913578 species 1 0 1357916 Sphingopyxis sp. QXT-31 1151 species 1330 Sphingopyxis sp. MG 1866325 species 0 1 species 766 Sphingopyxis sp. 113P3 292913 0 1 Sphingopyxis granuli 1521 267128 species 0 1 species 117207 1302 Sphingopyxis alaskensis 1 0 species 33050 Sphingopyxis macrogoltabida 2223 1 0 species 1515612 Sphingopyxis fribergensis 981 1 0 genus 1312 Zymomonas 541 1 0 2 17 0 1 Zymomonas mobilis 1295 542 species 8 2 0 1 72173 Citromicrobium 1397 genus 2630544 1389 no rank 1 0 1389 Citromicrobium sp. JL477 1634516 species 0 1 Erythrobacteraceae 19915 335929 family 0 338 22 1 0 6 5942 2800788 no rank genus Erythrobacter 3527 1041 1 0 101 3 1 0 species 1112 Porphyrobacter neustonensis 1294 0 1 Erythrobacter litoralis 2132 39960 species 1 0 113 3 genus Porphyrobacter 2415 1111 0 2 no rank 2302 2683265 0 1 1012 Porphyrobacter sp. LM 6 1896196 species 2023229 Porphyrobacter HT-58-2 1290 species 1 0 1 94 3 0 genus 1295327 Croceicoccus 2972 1676 Croceicoccus marinus 450378 species 0 1 species 1202 Croceicoccus naphthovorans 1348774 0 1 0 2 genus 1915 2800681 species 1112 Erythrobacter gangjinensis 502682 0 1 1648404 803 Erythrobacter atlanticus species 1 0 genus 1623 2800686 0 2 species Altererythrobacter dongtanensis 829 692370 0 1 0 1 Altererythrobacter mangrovi 794 1982042 species genus 2800682 1247 1 0 1247 Altererythrobacter namhicola 645517 species 0 1 0 2 1908 1855416 genus 853 Erythrobacter flavus 192812 species 0 1 0 1 1055 Erythrobacter seohaensis 266951 species 2932 Altererythrobacter 361177 genus 0 4 190 1 1 0 species 361183 874 Altererythrobacter epoxidivorans species 476157 Altererythrobacter ishigakiensis 462 1 0 1 0 species 1267766 1406 Altererythrobacter atlanticus 0 1 genus 1038 2800685 1038 Altererythrobacter marensis 543877 species 0 1 0 91 863 1 114850 Rhodobacterales 204455 order 1 0 2241 90 family Rhodobacteraceae 113987 31989 Loktanella 5 245186 genus 0 1 genus 478070 Labrenzia 5379 1 60 4 0 0 2 3601 2648686 no rank species 2021862 Labrenzia sp. VG12 1809 1 0 Labrenzia sp. CP4 1792 1674922 species 0 1 0 1 species Labrenzia aggregata 1718 187304 2 0 no rank 58840 2426 species Rhodobacteraceae bacterium 824 1904441 0 1 species Rhodobacteraceae bacterium QY30 1602 2033435 0 1 1 4 2 0 genus 74032 Antarctobacter 1819 1815 Antarctobacter heliothermus 74033 species 0 1 0 2 54 1 3345 Pannonibacter 227873 genus 1 0 species 121719 Pannonibacter phragmitetus 3291 1 0 18 3 genus Ruegeria 3591 97050 89184 Ruegeria pomeroyi 2499 species 1 0 no rank 2625375 1074 1 0 species 1074 Ruegeria sp. TM1040 292414 0 1 0 9 338 1 18373 Paracoccus 265 genus species 34004 Paracoccus aminovorans 2246 1 0 species Paracoccus denitrificans 3279 266 0 1 2065379 1900 Paracoccus sp. CBA4604 species 1 0 0 1 species Paracoccus aminophilus 1525 34003 0 1 1650 246570 no rank 0 1 Paracoccus sp. BM15 1650 1529068 species species 147645 3051 Paracoccus yeei 1 0 species Paracoccus contaminans 2135 1945662 0 1 0 1 Paracoccus zhejiangensis 2249 1077935 species 0 1 1315 1649279 genus 1 0 379347 Ruegeria mobilis 1315 species 0 1 genus 414 1284657 1284658 Planktomarina temperata 414 species 1 0 Dinoroseobacter 1801 309512 genus 0 5 2 1 0 1 species Dinoroseobacter shibae 1796 215813 2 8 0 1 1097466 2425 Defluviimonas genus 1335048 2417 Defluviimonas alba species 1 0 53945 2495 Octadecabacter genus 4 25 0 1 species 1217908 727 Octadecabacter antarcticus 1 0 936 Octadecabacter arcticus 53946 species 0 1 1 0 species 1458307 807 Octadecabacter temperatus genus 299261 Tateyamaria 1428 1 2 2 0 299262 Tateyamaria omphalii 1426 species 1 0 1579315 465 genus 1 0 Halocynthiibacter arcticus 465 1579316 species 0 1 0 1 906 119541 genus species 906 Rhodobaca barguzinensis 441209 0 1 1 2 14 0 genus 58842 2841 Sagittula 1 0 no rank 2624628 2827 0 1 Sagittula sp. P11 2827 2009329 species 302485 11277 Phaeobacter genus 5 88 0 1 species 221822 3703 Phaeobacter inhibens 1 0 1844006 928 Phaeobacter porticola species 1 0 species 60890 Phaeobacter gallaeciensis 3381 1 0 1 0 1580596 3177 Phaeobacter piscinae species 0 2 1 1 827 Marivivens 1759396 genus no rank 2622455 826 1 0 0 1 Marivivens sp. JLT3646 826 1920883 species 875170 Celeribacter 5737 genus 35 5 0 1 Celeribacter indicus 1672 1208324 species 0 1 1 0 1397108 Celeribacter marinus 684 species species Celeribacter manganoxidans 1873 1411902 0 1 species Celeribacter ethanolicus 1473 1758178 0 1 genus 188905 929 Jannaschia 1 2 1 0 no rank 2645469 928 1 0 928 Jannaschia sp. CCS1 290400 species 0 1 34008 Rhodovulum 6079 genus 83 4 0 1 35806 Rhodovulum sulfidophilum 2736 species 1 0 0 2 3260 2631432 no rank 1 0 308754 Rhodovulum sp. MB263 1616 species 0 1 Rhodovulum sp. P5 1644 1564506 species 285107 Thioclava 1338 genus 3 2 0 1 1915078 Thioclava nitratireducens 1335 species 1 0 24 3 0 1 92944 Ketogulonicigenium 3011 genus species 92945 1640 Ketogulonicigenium vulgare 1 0 0 1 1347 Ketogulonicigenium robustum 92947 species 0 41 2 1 Marinovum 2315 367771 genus species Marinovum algicola 2274 42444 0 1 8 2 0 1 159345 Roseibacterium 1417 genus species 159346 1409 Roseibacterium elongatum 1 0 Confluentimicrobium 1881 1609958 genus 0 18 2 1 no rank 2643318 1863 1 0 0 1 Confluentimicrobium sp. EMB200-NS6 1863 1609966 species 2 0 genus 263377 4901 1 0 species 1229727 2474 Thiobacimonas profunda 0 1 2427 2640570 no rank 1 0 1792508 Yangia sp. CCB-MM3 2427 species genus 2211641 1719 1 0 1719 Loktanella vestfoldensis 245188 species 0 1 1851 Roseobacter 2433 genus 0 3 7 1 0 1 Roseobacter litoralis 984 42443 species 1 0 2434 860 Roseobacter denitrificans species 25 2 0 1 360528 Pelagibaca 2630 genus 0 1 species Pelagibaca abyssi 2605 1250539 1 5 2 0 genus 191028 Leisingera 2020 133924 2015 Leisingera methylohalidivorans species 1 0 1060 9676 Rhodobacter genus 5 152 0 1 0 2 no rank 3002 196779 1586 Rhodobacter sp. CZR27 2033869 species 0 1 1850250 1416 Rhodobacter sp. LPB0142 species 1 0 species Rhodobacter sphaeroides 4444 1063 0 1 0 1 species 2078 Rhodobacter capsulatus 1061 1 3 23 0 genus 60136 3677 Sulfitobacter 1 0 1402135 Sulfitobacter pseudonitzschiae 2110 species no rank 196795 1544 1 0 1 0 species 1917485 Sulfitobacter sp. AM1-D1 1544 9 Thalassococcus 436357 genus 0 1 12 2 0 1 74030 Roseovarius 1424 genus 0 1 Roseovarius mucosus 1412 215743 species 1 4 4 0 order 255473 Parvularculales 460 family 456 Parvularculaceae 255474 1 0 3 16 1 0 2 12 genus 440 Parvularcula 208215 208216 428 Parvularcula bermudensis species 1 0 5 0 1921002 1127 order 1777752 358 Candidatus Paracaedibacteraceae family 2 1 0 1 0 1 357 1521255 genus 1 0 91604 357 Candidatus Paracaedibacter acanthamoebae species family Caedimonadaceae 381 2100208 1 0 7 2 0 1 374 1509243 genus 0 1 374 Candidatus Nucleicultrix amoebiphila 1509244 species 1 0 family 44746 388 no rank 388 204454 0 1 1 0 species 86106 388 endosymbiont of Acanthamoeba sp. UWC8 order 2215 Pelagibacterales 54526 1 0 7 1 1 5 8 0 family 1655514 1530 Pelagibacteraceae 1655516 964 no rank 2 0 1 0 859653 alpha proteobacterium HIMB5 758 species 1 0 744985 alpha proteobacterium HIMB59 206 species genus 558 198251 0 2 0 1 Candidatus Pelagibacter ubique 274 198252 species 1 0 no rank 2647897 284 species Candidatus Pelagibacter sp. IMCC9063 284 1002672 0 1 0 1 genus 684 2045213 1925548 Candidatus Fonsibacter ubiquis 684 species 1 0 8 0 no rank 82117 6192 62654 712 clade 2 0 2 1 0 1 767891 712 Candidatus Puniceispirillum genus species Candidatus Puniceispirillum marinum 711 767892 0 1 0 2 132 1 1946 Phreatobacter 1632780 genus Phreatobacter sp. S-12 1814 1868589 species 0 1 genus 991903 1790 Polymorphum 1 2 15 0 1 0 991904 Polymorphum gilvum 1775 species 1 0 2 19 genus 1744 Micavibrio 213485 1 0 349221 Micavibrio aeruginosavorus 1725 species 0 5 2557 2800060 order 69657 Hyphomonadaceae 2557 family 87 5 0 1 1 0 genus 2723 564 2724 Hirschia baltica 564 species 1 0 85 Hyphomonas 1906 genus 39 3 0 1 1 0 2630699 815 no rank 1 0 1906738 Hyphomonas sp. Mor2 815 species species 1052 Hyphomonas neptunium 81032 0 1 3182 209 0 1 356 Rhizobiales 259960 order 0 105 7 1 Xanthobacteraceae 8296 335928 family 1 2 87 0 genus 6 2978 Azorhizobium species 7 Azorhizobium caulinodans 2891 1 0 1 28 2 0 genus 279 Xanthobacter 2865 species 2837 Xanthobacter autotrophicus 280 0 1 1 101 2 0 genus 152053 Starkeya 2348 Starkeya novella 2247 921 species 0 1 0 88 7 1 Aurantimonadaceae 8663 255475 family Aureimonas 1854 414371 genus 0 21 2 1 0 1 1833 2615206 no rank 1349819 Aureimonas sp. AU20 1833 species 1 0 293088 6721 Martelella genus 4 104 0 1 293089 2207 Martelella mediterranea species 1 0 1 0 no rank 2629616 2160 species 2160 Martelella sp. AD-3 686597 0 1 1486262 2250 Martelella endophytica species 1 0 45401 Hyphomicrobiaceae 19140 family 104 19 0 1 1068 1154 Rhodomicrobium genus 2 25 0 1 species 1069 1129 Rhodomicrobium vannielii 1 0 genus 119044 Filomicrobium 760 1 3 2 0 757 Candidatus Filomicrobium marinum 1608628 species 0 1 1 56 2 0 genus 59282 Blastochloris 1792 species 1079 Blastochloris viridis 1736 1 0 169 4 0 1 46913 Devosia 6694 genus no rank 6525 196773 0 3 1 0 1736675 Devosia sp. A16 2924 species 2268 Devosia sp. H5989 1643450 species 0 1 species Devosia sp. I507 1333 2083786 0 1 genus 1082930 Pelagibacterium 1296 1 12 2 0 1 0 531813 1284 Pelagibacterium halotolerans species genus 81 Hyphomicrobium 5239 1 47 4 0 species 53399 Hyphomicrobium denitrificans 1539 1 0 2619925 1740 no rank 1 0 species 717785 Hyphomicrobium sp. MC1 1740 1 0 1 0 species 1427356 1913 Hyphomicrobium nitrativorans 29407 2101 Rhodoplanes genus 2 80 0 1 1 0 no rank 2619116 2021 0 1 2021 Rhodoplanes sp. Z2-YC6860 674703 species family 25205 Phyllobacteriaceae 69277 1 0 20 207 genus Nitratireductor 1120 245876 1 0 53 2 472175 1067 Nitratireductor basaltis species 1 0 1 577 9 0 genus 68287 Mesorhizobium 17376 1 0 no rank 325217 2203 species 278153 2203 Mesorhizobium sp. WSM1497 1 0 Mesorhizobium ciceri 2888 39645 species 0 1 species 71433 2554 Mesorhizobium amorphae 1 0 1 0 1670800 1441 Mesorhizobium sp. B7 species 1 0 species 593909 2276 Mesorhizobium opportunistum species Mesorhizobium loti 1906 381 0 1 1781 Mesorhizobium japonicum 2066070 species 0 1 species 536018 Mesorhizobium australicum 1750 1 0 1 0 10 2 genus Phyllobacterium 1227 28100 species 1217 Phyllobacterium zundukense 1867719 0 1 genus 274591 Hoeflea 1632 1 13 2 0 0 1 no rank 1619 2614931 species 1620421 Hoeflea sp. IMCC20628 1619 1 0 genus 1296 Chelativorans 449972 1 0 2 13 1283 2643807 no rank 0 1 0 1 Chelativorans sp. BNC1 1283 266779 species 31 2 0 1 31988 Aminobacter 2347 genus 1 0 83263 2316 Aminobacter aminovorans species 5018 119042 no rank 0 6 1 0 16 2 genus Methyloceanibacter 1619 1484898 1 0 1384459 Methyloceanibacter caenitepidi 1603 species 1425 Pseudorhodoplanes 1734920 genus 0 2 40 1 0 1 species Pseudorhodoplanes sinuspersici 1385 1235591 1 0 2 13 genus 1974 Hartmannibacter 1572860 Hartmannibacter diazotrophicus 1961 1482074 species 0 1 family Chelatococcaceae 3921 2036754 1 0 60 4 1 161 3 0 genus 28209 Chelatococcus 3861 2638111 2163 no rank 1 0 1 0 species 1702325 2163 Chelatococcus sp. CO-6 1 0 444444 Chelatococcus daeguensis 1537 species 0 5 5 1 1822 Beijerinckiaceae 45404 family 1 0 7 2 genus Beijerinckia 682 532 0 1 675 Beijerinckia indica 533 species 14 2 0 1 120652 Methylocella 1135 genus 1 0 199596 1121 Methylocella silvestris species 1 15 188 0 family 119045 29710 Methylobacteriaceae 33 2 0 1 186650 Microvirga 2717 genus species 1882682 2684 Microvirga ossetica 1 0 2282523 10494 genus 3 0 3184 Methylobacterium populi 223967 species 0 1 species 408 Methylobacterium extorquens 5697 1 0 0 1 species 1613 Methylobacterium zatmanii 29429 9 910 0 1 407 16311 Methylobacterium genus 0 3 5873 2615210 no rank 1 0 1479019 1953 Methylobacterium sp. C1 species 0 1 species Methylobacterium sp. AMS5 1804 925818 species Methylobacterium sp. 4-46 2116 426117 0 1 0 1 Methylobacterium nodulans 2108 114616 species species Methylobacterium aquaticum 2505 270351 0 1 1912 Methylobacterium radiotolerans 31998 species 0 1 1 0 418223 1507 Methylobacterium phyllosphaerae species 0 1 species 1496 Methylobacterium oryzae 334852 7 6 0 1 31993 Methylocystaceae 3164 family Methylocystis 1719 133 genus 0 37 3 1 655015 824 Methylocystis bryophila species 1 0 1 0 2625913 858 no rank 187303 Methylocystis sp. SC2 858 species 1 0 0 2 64 1 1438 Methylosinus 425 genus 0 1 Methylosinus trichosporium 1374 426 species family 772 Bartonellaceae 7984 1 20 18 0 145 17 0 1 773 Bartonella 7964 genus 774 351 Bartonella bacilliformis species 1 0 38323 413 Bartonella henselae species 1 0 species 33047 Bartonella vinsonii 593 1 0 species 164 Bartonella australis 388640 0 1 498 Bartonella ancashensis 1318743 species 0 1 0 1 Bartonella quintana 382 803 species species 506 Bartonella tribocorum 85701 0 1 0 1 species 370 Bartonella grahamii 33045 1617 Bartonella apis 1686310 species 0 1 2353 2645622 no rank 0 6 Bartonella sp. WD16.2 506 1933904 species 0 1 species Bartonella sp. Raccoon60 399 1933912 0 1 0 1 Bartonella sp. JB63 264 1933907 species 1 0 1933910 Bartonella sp. A1379B 409 species 0 1 species Bartonella sp. 1-1C 507 515256 species 1933906 268 Bartonella sp. JB15 1 0 56426 572 Bartonella clarridgeiae species 1 0 119043 896 Rhodobiaceae family 3 8 0 1 genus Parvibaculum 888 256616 1 0 34 2 Parvibaculum lavamentivorans 854 256618 species 0 1 family Bradyrhizobiaceae 46732 41294 1 0 447 26 genus 1649510 Variibacter 1079 1 56 2 0 1 0 1333996 Variibacter gotjawalensis 1023 species 1 5 119 0 genus 85413 7623 Bosea 1 0 species 1526658 Bosea vaviloviae 2052 5452 2653178 no rank 0 3 1 0 species 1792307 Bosea sp. PAMC 26642 1463 1 0 species 2015316 Bosea sp. AS-1 2063 Bosea sp. RAC05 1926 1842539 species 0 1 252 2 0 1 1073 Rhodopseudomonas 10484 genus species Rhodopseudomonas palustris 10232 1076 0 1 genus Oligotropha 1107 40136 1 0 29 2 40137 Oligotropha carboxidovorans 1078 species 1 0 911 1638 Nitrobacter genus 3 26 0 1 1 0 912 Nitrobacter hamburgensis 1009 species Nitrobacter winogradskyi 603 913 species 0 1 1 11 683 0 genus 374 24354 Bradyrhizobium 1 0 1274631 Bradyrhizobium icense 1240 species species 375 Bradyrhizobium japonicum 3503 1 0 2631580 12681 no rank 6 0 2057741 2272 Bradyrhizobium sp. SK17 species 1 0 species Bradyrhizobium sp. ORS 278 2019 114615 0 1 1 0 288000 2221 Bradyrhizobium sp. BTAi1 species Bradyrhizobium sp. CCGE-LA001 2171 1223566 species 0 1 115808 Bradyrhizobium sp. ORS 285 1964 species 1 0 1 0 species 376 2034 Bradyrhizobium sp. 0 1 species 2411 Bradyrhizobium oligotrophicum 44255 1 0 1355477 Bradyrhizobium diazoefficiens 3836 species family 11728 Brucellaceae 118882 1 0 20 108 1 14 2053 0 genus 234 5182 Brucella 0 1 species 64 Brucella microti 444163 species 29459 125 Brucella melitensis 1 0 235 182 Brucella abortus species 1 0 240 Brucella pinnipedialis 120576 species 0 1 0 1 species 63 Brucella ovis 236 no rank 1368 2632610 0 4 0 1 species 454 Brucella sp. 09RB8471 1149952 98 Brucella sp. 2002734562 1891098 species 0 1 species 1885919 438 Brucella sp. 141012304 1 0 1 0 species 1844051 Brucella sp. 09RB8910 378 1 0 species 120577 Brucella ceti 401 species 272 Brucella vulpis 981386 0 1 Brucella canis 266 36855 species 0 1 1 0 species 29461 148 Brucella suis 0 64 5 1 Ochrobactrum 6438 528 genus 1 0 271865 1344 Ochrobactrum sp. A44 species 0 1 Ochrobactrum pseudogrignonense 1494 419475 species species 1787 Ochrobactrum anthropi 529 0 1 0 1 species 1749 Ochrobactrum pituitosum 571256 1 0 1096 52 family Rhizobiaceae 84499 82115 1 6 9 0 genus 34019 1077 Liberibacter species 34021 Candidatus Liberibacter asiaticus 125 1 0 0 1 271 Candidatus Liberibacter africanus 34020 species 1 0 species 1273132 Liberibacter crescens 257 0 1 species 234 Candidatus Liberibacter americanus 309868 1 0 556287 181 Candidatus Liberibacter solanacearum species 0 33 no rank 62294 227290 3101 24 0 1 379 Rhizobium 42707 genus 1 0 56730 Rhizobium gallicum 2424 species 0 18 no rank 17322 2613769 0 1 1530 Rhizobium sp. N324 1703969 species species 2020312 Rhizobium sp. CIAT894 1244 1 0 0 1 species Rhizobium sp. IRBG74 1593 424182 1507 Rhizobium sp. 10195 2028343 species 0 1 872 Rhizobium sp. Kim5 2020311 species 0 1 species 432 Rhizobium sp. N1314 1703961 0 1 0 1 species 432 Rhizobium sp. N731 1703966 1 0 species 1703960 18 Rhizobium sp. N113 1 0 species 1571470 1870 Rhizobium sp. ACO-34A 0 1 Rhizobium sp. TAL182 256 2020313 species 1869170 1493 Rhizobium sp. S41 species 1 0 23 Rhizobium sp. N1341 1703962 species 0 1 species 1402 Rhizobium sp. NT-26 1125847 0 1 species Rhizobium sp. Y9 1541 1914541 0 1 0 1 species Rhizobium sp. N741 7 1703967 828 Rhizobium sp. NXC14 1981173 species 0 1 2048897 Rhizobium sp. NXC24 1205 species 1 0 1301032 1069 Rhizobium sp. IE4771 species 1 0 species 1575 Rhizobium tropici 398 0 1 384 Rhizobium leguminosarum 9938 species 1 0 3638 Rhizobium phaseoli 396 species 0 1 1 0 29449 4709 Rhizobium etli species 0 2 51 1 3462 Neorhizobium 1525371 genus 399 Neorhizobium galegae 3411 species 1 0 1 0 346 7 genus Agrobacterium 16125 357 2632611 3236 no rank 2 0 species 1842536 Agrobacterium sp. RAC06 1356 1 0 861208 1880 Agrobacterium sp. H13-3 species 1 0 0 2 8734 1183400 species group species 6928 Agrobacterium tumefaciens 358 0 1 0 1 1806 Agrobacterium fabrum 1176649 species species Agrobacterium rhizogenes 2072 359 0 1 0 1 species Agrobacterium vitis 1737 373 10 0 no rank 227292 17407 106591 3531 Ensifer genus 3 47 0 1 0 1 species 1684 Ensifer sojae 716925 species 106592 Ensifer adhaerens 1800 1 0 0 7 393 1 13876 Sinorhizobium 28105 genus 1 0 species group 663276 3669 0 1 species 3669 Sinorhizobium fredii 380 no rank 3386 2613772 0 2 0 1 Sinorhizobium sp. RAC02 1954 1842534 species species 1432 Sinorhizobium sp. CCBAU 05631 794846 0 1 0 1 species Sinorhizobium americanum 1793 194963 1 0 species 110321 1257 Sinorhizobium medicae 0 1 species 3378 Sinorhizobium meliloti 382 36 2 0 1 323620 Shinella 2625 genus 0 1 no rank 2589 2643062 1 0 species 879274 Shinella sp. HZN7 2589 1104 2800059 order 0 2 family 1104 2800061 0 2 Maricaulis 1104 74317 genus 0 25 2 1 1 0 species 74318 1079 Maricaulis maris Caulobacterales 29748 204458 order 0 243 20 1 19 575 0 1 76892 29505 Caulobacteraceae family 1 0 25 2 genus Asticcacaulis 1726 76890 0 1 species Asticcacaulis excentricus 1701 78587 Brevundimonas 9820 41275 genus 0 226 7 1 1 0 species 41276 Brevundimonas vesicularis 1367 1508 Brevundimonas subvibrioides 74313 species 0 1 1 0 species 588932 1986 Brevundimonas naejangsanensis 3 0 no rank 2622653 4733 0 1 Brevundimonas sp. DS20 1789 1532555 species 0 1 Brevundimonas sp. GW460-12-10-14-LB2 1286 1827469 species 1 0 1938605 Brevundimonas sp. LM2 1658 species 2 71 0 1 20 2668 Phenylobacterium genus 284016 2597 Phenylobacterium zucineum species 1 0 0 238 6 1 Caulobacter 14068 75 genus 1 0 no rank 2648921 3365 0 1 Caulobacter sp. K31 3365 366602 species species 1789 Caulobacter henricii 69395 0 1 69666 2030 Caulobacter mirabilis species 1 0 1 0 species 155892 Caulobacter vibrioides 4606 species 88688 2040 Caulobacter segnis 1 0 no rank 81440 648 1 0 species Caulobacteraceae bacterium OTSz_A_272 648 1759059 0 1 class 1807140 4300 6 0 order Acidithiobacillales 4300 225057 1 0 29 6 1 5 98 0 family 225058 4271 Acidithiobacillaceae genus Acidithiobacillus 4173 119977 1 0 50 4 33059 Acidithiobacillus caldus 1264 species 1 0 0 1 species 1450 Acidithiobacillus ferrivorans 160808 920 Acidithiobacillus ferrooxidans 1409 species 1 0 1 12 0 1 1553900 Oligoflexia 5160 class 2024979 Bacteriovoracales 1367 order 3 6 0 1 1 0 2 3 family Bacteriovoracaceae 726 263369 146784 724 Bacteriovorax genus 2 2 0 1 species 960 Bacteriovorax stolpii 722 1 0 1652132 638 family 2 0 genus 1652133 638 Halobacteriovorax 1 2 1 0 97084 Halobacteriovorax marinus 637 species 1 0 3792 Bdellovibrionales 213481 order 0 5 23 1 family 3769 Bdellovibrionaceae 213483 1 0 4 8 0 3 24 1 3761 Bdellovibrio 958 genus species 453816 464 Bdellovibrio exovorus 1 0 0 1 species 3273 Bdellovibrio bacteriovorus 959 class Gammaproteobacteria 1132586 1236 1 0 2732 885 0 4 7 1 1114 Nevskiales 1775403 order 0 2 family 1102 2689614 0 2 15 1 1102 Steroidobacter 469322 genus species 465721 Steroidobacter denitrificans 1087 1 0 family Sinobacteraceae 5 568386 0 1 1 43 32 0 order 135625 Pasteurellales 23746 family 23703 Pasteurellaceae 712 1 0 31 941 724 Haemophilus 5064 genus 38 6 0 1 0 1 360 2609962 no rank 1 0 712310 360 Haemophilus sp. oral taxon 036 species 0 1 Haemophilus pittmaniae 1031 249188 species 0 1 1793 Haemophilus influenzae 727 species 729 1194 Haemophilus parainfluenzae species 1 0 [Haemophilus] ducreyi 648 730 species 0 1 1 0 3 67 genus 2603 Aggregatibacter 416916 0 1 species Aggregatibacter actinomycetemcomitans 1191 714 1 0 732 Aggregatibacter aphrophilus 1345 species genus 2701 Pasteurella 745 1 0 3 17 0 1 2122 Pasteurella multocida 747 species Pasteurella dagmatis 562 754 species 0 1 1744 476528 genus 0 1 0 1 1744 Bibersteinia trehalosi 47735 species Histophilus 1250 214906 genus 0 1 2 1 0 1 Histophilus somni 1249 731 species 0 4 2 1 Basfia 1173 697331 genus species 157673 [Mannheimia] succiniciproducens 1169 1 0 genus 713 3695 Actinobacillus 1 5 31 0 species 715 1132 Actinobacillus pleuropneumoniae 1 0 species Actinobacillus equuli 1025 718 0 1 species 716 Actinobacillus suis 775 1 0 732 Actinobacillus succinogenes 67854 species 0 1 1 0 2 11 genus 1104 Glaesserella 2094023 0 1 species Glaesserella parasuis 1093 738 75984 Mannheimia 2655 genus 22 4 0 1 species 883 Mannheimia haemolytica 75985 0 1 1 0 2645054 704 no rank 704 Mannheimia sp. USDA-ARS-USMARC-1261 1432056 species 0 1 species Mannheimia varigena 1046 85404 0 1 genus 155493 Gallibacterium 773 1 2 2 0 1 0 750 Gallibacterium anatis 771 species 1934945 Immundisolibacterales 2392 order 84 4 0 1 family 1934946 2308 Immundisolibacteraceae 1 3 146 0 1 24 2 0 genus 1934947 Immundisolibacter 2162 1810504 Immundisolibacter cernigliae 2138 species 1 0 0 3 order 553 135615 0 3 34 1 553 Cardiobacteriaceae 868 family genus Dichelobacter 519 869 1 0 22 2 0 1 Dichelobacter nodosus 497 870 species Aeromonadales 63876 135624 order 0 353 29 1 family 84642 63523 Aeromonadaceae 1 28 578 0 0 2 28 1 3155 Oceanimonas 129577 genus 3127 2636315 no rank 0 1 species 511062 Oceanimonas sp. GK1 3127 1 0 0 11 2 1 Tolumonas 1477 43947 genus 0 1 Tolumonas auensis 1466 43948 species Oceanisphaera 1215 225143 genus 0 1 3 1 0 1 Oceanisphaera sp. AMac2203 649 1903694 species 0 1 Oceanisphaera profunda 565 1416627 species 18 3510 0 1 642 53548 Aeromonas genus 651 2019 Aeromonas media species 1 0 654 Aeromonas veronii 5303 species 1 0 1 0 species 196024 Aeromonas dhakensis 2790 species 3457 Aeromonas salmonicida 645 0 1 0 1 2647 Aeromonas schubertii 652 species 0 1 species Aeromonas hydrophila 12191 644 948519 Aeromonas rivipollensis 2330 species 1 0 Aeromonas caviae 1675 648 species 0 1 558964 2361 Aeromonas aquatica species 1 0 0 8 no rank 15265 257493 1920107 1737 Aeromonas sp. ASNIH7 species 1 0 1 0 species 1636607 1550 Aeromonas sp. ASNIH2 1 0 species 1636608 1708 Aeromonas sp. ASNIH3 1636606 1560 Aeromonas sp. ASNIH1 species 1 0 0 1 1992 Aeromonas sp. ASNIH5 1758179 species 1636609 Aeromonas sp. ASNIH4 2324 species 1 0 species 2033033 Aeromonas sp. CU5 2056 1 0 species Aeromonas sp. CA23 2338 2033032 0 1 1 0 33 2 genus Zobellella 3550 347533 1 0 347534 Zobellella denitrificans 3517 species 4 0 order 1240482 1712 0 4 family 1712 1240483 1 0 5 2 genus Gilliamella 997 1193503 0 1 species Gilliamella apicola 992 1196095 5 2 0 1 1335631 Frischella 715 genus species 710 Frischella perrara 1267021 0 1 1 335 102 0 order 135622 Alteromonadales 64289 1 3 1 0 family 267891 739 Moritellaceae 0 2 21 1 738 Moritella 58050 genus 1 0 species 80854 Moritella viscosa 717 family 267889 4504 Colwelliaceae 1 9 10 0 0 23 6 1 Colwellia 3899 28228 genus 1 0 28229 Colwellia psychrerythraea 711 species 0 1 species Colwellia beringensis 676 1967665 3 0 no rank 196834 2489 species 58049 1143 Colwellia sp. MT41 1 0 Colwellia sp. PAMC 20917 677 1816218 species 0 1 1816219 Colwellia sp. PAMC 21821 669 species 1 0 1518149 595 Thalassotalea genus 2 7 0 1 588 Thalassotalea crassostreae 1763536 species 0 1 267892 2287 Ferrimonadaceae family 3 7 0 1 Ferrimonas 2280 44011 genus 0 32 2 1 species 44012 Ferrimonas balearica 2248 1 0 0 2 family 1360 267894 0 2 genus 1360 67572 0 1 species 667 Psychromonas ingrahamii 357794 0 1 693 2614957 no rank Psychromonas sp. CNPT3 693 314282 species 0 1 family 267888 12572 Pseudoalteromonadaceae 1 25 58 0 0 24 273 1 12514 Pseudoalteromonas 53246 genus 1 0 species 161398 Pseudoalteromonas phenolica 402 0 1 332 Pseudoalteromonas agarivorans 176102 species 314281 Pseudoalteromonas tunicata 574 species 1 0 0 1 species Pseudoalteromonas marina 265 267375 species Pseudoalteromonas rubra 591 43658 0 1 Pseudoalteromonas nigrifaciens 459 28109 species 0 1 464 Pseudoalteromonas arctica 394751 species 0 1 Pseudoalteromonas aliena 703 247523 species 0 1 1348114 655 Pseudoalteromonas piratica species 1 0 0 1 Pseudoalteromonas espejiana 368 28107 species 1 0 43662 768 Pseudoalteromonas piscicida species 0 1 species Pseudoalteromonas luteoviolacea 551 43657 5 0 no rank 194690 2967 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 764 1720343 0 1 species 317 Pseudoalteromonas sp. 13-15 1761891 0 1 species 234831 Pseudoalteromonas sp. SM9913 358 1 0 species 650 Pseudoalteromonas sp. NC201 1514074 0 1 0 1 species 878 Pseudoalteromonas sp. Bsw20308 283699 166935 Pseudoalteromonas translucida 390 species 1 0 Pseudoalteromonas tetraodonis 450 43659 species 0 1 species 228 400 Pseudoalteromonas haloplanktis 1 0 778 Pseudoalteromonas atlantica 288 species 0 1 1 0 298657 772 Pseudoalteromonas spongiae species species 352 Pseudoalteromonas issachenkonii 152297 0 1 family 267893 Idiomarinaceae 2167 1 109 6 0 genus Idiomarina 2058 135575 1 0 12 5 Idiomarina loihiensis 459 135577 species 0 1 1 0 1096243 373 Idiomarina piscisalsi species no rank 1214 2614829 0 2 0 1 species 592 Idiomarina sp. X4 2055892 622 Idiomarina sp. OT37-5b 2100422 species 0 1 Alteromonadaceae 24517 72275 family 0 204 28 1 1 0 2 25 genus 1017 Agarivorans 261825 Agarivorans gilvus 992 680279 species 0 1 0 2 genus 1040 89404 0 1 species Glaciecola nitratireducens 498 300231 1 0 no rank 2618684 542 Glaciecola sp. 4H-3-7+YE-5 542 983545 species 0 1 1 0 10 27 genus 6374 Alteromonas 226 1 0 species 233316 890 Alteromonas stellipolaris 589873 Alteromonas australica 402 species 1 0 0 1 552 Alteromonas naphthalenivorans 715451 species species 314275 1245 Alteromonas mediterranea 1 0 0 3 no rank 1277 2614992 1 0 1777491 602 Alteromonas sp. Mac1 species species 1917158 Alteromonas sp. RW2A1 424 1 0 1 0 species 2058133 251 Alteromonas sp. MB-3u-76 287094 Alteromonas addita 655 species 1 0 0 1 1326 Alteromonas macleodii 28108 species 1621534 678 genus 1 0 species 326544 Paraglaciecola psychrophila 678 1 0 35 2 0 1 1751872 Lacimicrobium 1747 genus 1 0 1526571 1712 Lacimicrobium alkaliphilum species 2742 Marinobacter 13457 genus 175 10 0 1 0 1 species 805 Marinobacter psychrophilus 330734 1 0 1420916 1306 Marinobacter similis species species 2743 2926 Marinobacter hydrocarbonoclasticus 1 0 0 3 4116 83889 no rank 1 0 1671721 1262 Marinobacter sp. CP1 species Marinobacter sp. LQ44 2067 1749259 species 0 1 1 0 species 490759 787 Marinobacter sp. BSs20148 1 0 1420917 Marinobacter salarius 1867 species species 1291 Marinobacter adhaerens 1033846 0 1 1874317 971 Marinobacter salinus species 1 0 family 15808 Shewanellaceae 267890 1 0 25 86 0 202 24 1 Shewanella 15722 22 genus species 966 Shewanella psychrophila 225848 0 1 538 Shewanella pealeana 70864 species 0 1 species 359303 Shewanella loihica 1174 1 0 671 Shewanella marisflavi 260364 species 0 1 3175 196818 no rank 0 6 60481 541 Shewanella sp. MR-7 species 1 0 0 1 species 447 Shewanella sp. W3-18-1 351745 0 1 species 345 Shewanella sp. WE21 2029986 species 2059264 Shewanella sp. Pdp11 511 1 0 1 0 60480 546 Shewanella sp. MR-4 species 94122 785 Shewanella sp. ANA-3 species 1 0 62322 Shewanella baltica 1356 species 1 0 60478 Shewanella amazonensis 1182 species 1 0 species 24 573 Shewanella putrefaciens 1 0 1 0 192073 308 Shewanella denitrificans species 271097 Shewanella sediminis 478 species 1 0 1 0 species 60217 774 Shewanella violacea species Shewanella oneidensis 743 70863 0 1 0 1 species Shewanella frigidimarina 546 56812 0 1 816 Shewanella halifaxensis 271098 species 1 0 93973 793 Shewanella japonica species species 465 Shewanella piezotolerans 404011 0 1 532 Shewanella woodyi 60961 species 0 1 1 0 2018305 430 Shewanella bicestrii species order 135619 Oceanospirillales 54106 1 858 70 0 Saccharospirillaceae 2026 255527 family 0 6 5 1 genus 722 Reinekea 230494 1 0 2 12 710 Reinekea forsetii 1336806 species 0 1 1 18 2 0 genus 1445504 Gynuella 1298 Gynuella sunshinyii 1280 1445505 species 0 1 6685 Oceanospirillaceae 135620 family 0 13 113 1 0 4 11 1 1923 Marinomonas 28253 genus no rank 880 196814 0 1 Marinomonas sp. MWYL1 880 400668 species 0 1 0 1 species Marinomonas posidonica 480 936476 species 552 Marinomonas mediterranea 119864 0 1 0 2 1 1 711 Oleispira 188907 genus 188908 Oleispira antarctica 710 species 1 0 1537406 Bacterioplanes 1233 genus 9 2 0 1 1249553 Bacterioplanes sanyensis 1224 species 1 0 1 0 36 2 genus Marinobacterium 2231 48075 Marinobacterium aestuarii 2195 1821621 species 0 1 1 0 2 2 genus Thalassolituus 474 187492 0 1 Thalassolituus oleivorans 472 187493 species 1 435 30 0 family 28256 Halomonadaceae 31474 1 15 2 0 genus 376488 Halotalea 1087 376489 Halotalea alkalilenta 1072 species 1 0 genus Halomonas 20731 2745 1 0 343 15 1769 Halomonas chromatireducens 507626 species 0 1 0 1 419 Halomonas campaniensis 213554 species 0 1 species Halomonas hydrothermalis 1810 115561 1178482 1427 Halomonas huangheensis species 1 0 2571 Halomonas beimenensis 475662 species 0 1 species 1897729 2482 Halomonas aestuarii 1 0 8 0 2609666 9910 no rank 1 0 1504981 858 Halomonas sp. KO116 species species Halomonas sp. SF2003 1894 2136172 0 1 1 0 species 1971364 753 Halomonas sp. GT 0 1 species Halomonas sp. R57-5 1358 1610576 species 1949203 1018 Halomonas sp. 'Soap Lake #6' 1 0 1 0 1962264 1018 Halomonas sp. 'Soap Lake #7' species 1 0 1118153 Halomonas sp. GFAJ-1 577 species 2434 Halomonas sp. 1513 1883416 species 0 1 1 0 2 35 genus 1348 Chromohalobacter 42054 158080 Chromohalobacter salexigens 1313 species 1 0 404432 1867 Salinicola genus 2 62 0 1 species 1805 Salinicola tamaricis 1771309 0 1 0 2 14 1 2216 Cobetia 204286 genus 2202 Cobetia marina 28258 species 0 1 3 32 0 1 504090 3376 Kushneria genus 0 1 species 1596 Kushneria konosiri 698828 1 0 species 157779 1748 Kushneria marisflavi 414 114403 no rank 0 3 genus 252 235572 0 1 91844 Candidatus Portiera aleyrodidarum 252 species 1 0 1 0 genus 1495768 142 species 1495769 142 Candidatus Evansia muelleri 1 0 20 114185 genus 0 1 0 1 species Candidatus Carsonella ruddii 20 114186 Hahellaceae 1358 224379 family 0 4 3 1 genus Hahella 1354 158481 1 0 5 2 Hahella chejuensis 1349 158327 species 0 1 1920240 Kangiellaceae 2000 family 12 6 0 1 1 0 5 26 genus 1988 Kangiella 261963 0 1 Kangiella profundi 678 1561924 species 0 1 294 Kangiella geojedonensis 914150 species 1 0 1144748 Kangiella sediminilitoris 484 species 1 0 261964 506 Kangiella koreensis species family 875 Oleiphilaceae 191033 1 0 3 4 genus 141450 871 Oleiphilus 1 2 11 0 0 1 species 860 Oleiphilus messinensis 141451 Alcanivoracaceae 8830 224372 family 0 94 9 1 1 2 16 0 genus 2025617 1326 Ketobacter 1 0 species 1917421 Ketobacter alkanivorans 1310 6 130 0 1 59753 7410 Alcanivorax genus species 59754 Alcanivorax borkumensis 710 1 0 1 0 species 1094342 Alcanivorax xenomutans 1736 1 0 285091 Alcanivorax dieselolei 2147 species 0 1 Alcanivorax pacificus 2033 1306787 species 0 1 654 2638842 no rank 1113728 Alcanivorax sp. NBRC 101098 654 species 1 0 1706369 Cellvibrionales 17085 order 104 28 0 1 1 36 12 0 family 1706371 Cellvibrionaceae 8099 0 1 2 1 Agarilytica 871 2036021 genus Agarilytica rhodophyticola 870 1737490 species 0 1 genus 316625 765 1 0 86304 Saccharophagus degradans 765 species 1 0 447467 Simiduia 1518 genus 27 2 0 1 species 447471 1491 Simiduia agarivorans 1 0 0 4 74 1 4125 Cellvibrio 10 genus species Cellvibrio japonicus 1249 155077 0 1 no rank 2624793 2802 2 0 0 1 species 762 Cellvibrio sp. PSBB023 1945512 2040 Cellvibrio sp. PSBB006 1987723 species 0 1 784 Teredinibacter 2425 genus 0 2 1 1 2426 Teredinibacter turnerae 783 species 1 0 family 1706372 2185 Halieaceae 1 4 36 0 genus 1217416 Halioglobus 2149 1 37 3 0 0 1 964 Halioglobus japonicus 930805 species 1148 Halioglobus pacificus 930806 species 0 1 0 28 5 1 Microbulbiferaceae 4672 1706373 family 4 46 0 1 48073 4644 Microbulbifer genus 0 1 species Microbulbifer agarilyticus 1393 260552 0 1 1546 Microbulbifer aggregans 1769779 species 252514 Microbulbifer thermotolerans 1659 species 1 0 6 50 0 1 1706375 2025 Spongiibacteraceae family genus 1084558 813 Oceanicoccus 1 2 23 0 716816 790 Oceanicoccus sagamiensis species 1 0 genus 630749 Spongiibacter 553 1 3 2 0 2631504 550 no rank 1 0 1 0 1620392 550 Spongiibacter sp. IMCC21906 species 0 1 genus 609 1434050 1 0 1470434 609 Zhongshania aliphaticivorans species 0 63 13 1 Methylococcales 9763 135618 order 12 140 0 1 403 9700 Methylococcaceae family 0 26 2 1 Methylococcus 1697 413 genus species 414 Methylococcus capsulatus 1671 1 0 1 5 71 0 genus 416 5626 Methylomonas 1 0 421 1163 Methylomonas methanica species 0 1 Methylomonas denitrificans 1072 1538553 species 1 0 species 702114 1376 Methylomonas koyamae 1 0 2608980 1944 no rank 1944 Methylomonas sp. DH-1 1727196 species 0 1 762296 Methylovulum 1090 genus 21 2 0 1 1 0 species 1704499 1069 Methylovulum psychrotolerans genus 39773 Methylomicrobium 1147 1 1 2 0 1 0 species 271065 Methylomicrobium alcaliphilum 1146 no rank 3338 33811 0 2 species gamma proteobacterium HdN1 1547 83406 0 1 0 1 endosymbiont of unidentified scaly snail isolate Monju 1791 1248727 species 54 1206 0 1 135614 101010 Xanthomonadales order family Xanthomonadaceae 82776 32033 1 0 902 39 Xylella 907 2370 genus 0 1 2 1 species 2371 906 Xylella fastidiosa 1 0 0 17 1934 1 32345 Xanthomonas 338 genus 1 0 339 Xanthomonas campestris 4237 species 1 0 56458 Xanthomonas sacchari 2727 species species 53413 Xanthomonas axonopodis 1178 1 0 343 3151 Xanthomonas translucens species 1 0 0 1 Xanthomonas oryzae 2667 347 species species Xanthomonas vasicola 1053 56459 0 1 species 456327 1075 Xanthomonas euvesicatoria 1 0 species 56454 1353 Xanthomonas hortorum 1 0 0 1 1441 Xanthomonas perforans 442694 species 643453 5594 species group 2 0 346 4184 Xanthomonas citri species 1 0 0 1 species Xanthomonas fuscans 1410 366648 species 1100 Xanthomonas phaseoli 1985254 0 1 0 1 Xanthomonas vesicatoria 1656 56460 species 1091 Xanthomonas fragariae 48664 species 0 1 1 0 366650 Xanthomonas alfalfae 1133 species 1 0 species 29447 955 Xanthomonas albilineans genus Lysobacter 10511 68 1 0 108 5 0 1 species Lysobacter gummosus 2248 262324 435897 Lysobacter capsici 2957 species 1 0 species 69 2720 Lysobacter enzymogenes 1 0 84531 2478 Lysobacter antibioticus species 1 0 genus Stenotrophomonas 30198 40323 1 0 763 9 species 1930 Stenotrophomonas nitritireducens 83617 0 1 species 128780 3399 Stenotrophomonas acidaminiphila 1 0 995085 13842 species group 1 0 species Stenotrophomonas maltophilia 13842 40324 0 1 0 4 no rank 8116 196198 Stenotrophomonas sp. MYb57 1850 1827305 species 0 1 0 1 species Stenotrophomonas sp. WZN-1 1975 2005046 0 1 species 1935 Stenotrophomonas sp. KCTC 12332 1793721 1 0 species 1904944 Stenotrophomonas sp. LM091 2356 0 1 species Stenotrophomonas rhizophila 2148 216778 108 3 0 1 83618 Pseudoxanthomonas 6614 genus 4379 Pseudoxanthomonas suwonensis 314722 species 0 1 species 415229 2127 Pseudoxanthomonas spadix 1 0 1 0 9 2 genus Luteimonas 1299 83614 1 0 species 2006110 Luteimonas sp. 100111 1290 1 0 227 14 family Rhodanobacteraceae 17028 1775411 1 44 2 0 genus 70411 Frateuria 1775 0 1 species 1731 Frateuria aurantia 81475 genus 242605 1488 Luteibacter 1 2 14 0 species 242606 1474 Luteibacter rhizovicinus 1 0 2 39 0 1 323413 2517 Dokdonella genus 1 0 323415 2478 Dokdonella koreensis species 75309 2741 Rhodanobacter genus 2 79 0 1 2662 Rhodanobacter denitrificans 666685 species 0 1 7480 Dyella 231454 genus 0 4 173 1 0 1 Dyella jiangningensis 2072 1379159 species 0 1 Dyella japonica 2525 231455 species 0 1 species 2710 Dyella thiooxydans 445710 1 0 genus 2233801 800 800 Xanthomonadales bacterium D13 2021234 species 0 1 order 1692040 3148 Acidiferrobacterales 1 6 49 0 119 5 0 1 1692041 Acidiferrobacteraceae 3099 family 0 20 2 1 Sulfuricaulis 1756 1744881 genus 0 1 Sulfuricaulis limicola 1736 1620215 species 35 2 0 1 1692042 Sulfurifustis 1224 genus 0 1 species Sulfurifustis variabilis 1189 1675686 128 1386 0 1 72274 266014 Pseudomonadales order Moraxellaceae 26959 468 family 0 72 42 1 0 5 63 1 3208 Moraxella 475 genus species Moraxella ovis 560 29433 0 1 species 386891 Moraxella bovoculi 786 1 0 species 1425 Moraxella osloensis 34062 0 1 0 1 Moraxella catarrhalis 374 480 species 469 19263 Acinetobacter genus 25 227 0 1 40215 791 Acinetobacter junii species 1 0 no rank 196816 3202 7 0 species Acinetobacter sp. NCu2D-2 446 1608473 0 1 1 0 1646498 640 Acinetobacter sp. TTH0-4 species 1758189 363 Acinetobacter sp. ACNIH2 species 1 0 1 0 1407071 493 Acinetobacter sp. TGL-Y2 species 1636603 436 Acinetobacter sp. ACNIH1 species 1 0 2079596 Acinetobacter sp. SWBY1 299 species 1 0 0 1 species Acinetobacter sp. LoGeW2-3 525 1808001 0 1 species 502 Acinetobacter johnsonii 40214 1 0 40216 Acinetobacter radioresistens 518 species 0 1 Acinetobacter equi 678 1324350 species 0 1 Acinetobacter schindleri 836 108981 species species 1789224 494 Acinetobacter larvae 1 0 0 1 499 202950 species strain 499 Acinetobacter sp. ADP1 62977 0 1 0 1 species Acinetobacter oleivorans 553 1148157 species 743 Acinetobacter indicus 756892 0 1 106648 625 Acinetobacter bereziniae species 1 0 species 29430 Acinetobacter haemolyticus 863 1 0 species group 7946 909768 0 5 0 1 species Acinetobacter lactucae 419 1785128 1 0 471 1217 Acinetobacter calcoaceticus species 106654 1015 Acinetobacter nosocomialis species 1 0 48296 2288 Acinetobacter pittii species 1 0 1 0 470 Acinetobacter baumannii 3007 species 0 1 786 Acinetobacter soli 487316 species genus 497 4416 Psychrobacter 1 11 100 0 0 6 no rank 2327 196806 0 1 Psychrobacter sp. AntiMn-1 391 1720344 species species 401 Psychrobacter sp. P2G3 1699622 0 1 1028416 309 Psychrobacter sp. DAB_AL43B species 1 0 0 1 species Psychrobacter sp. P11G5 487 1699624 0 1 307 Psychrobacter sp. G 571800 species species 432 Psychrobacter sp. PRwf-1 349106 0 1 species 45610 449 Psychrobacter urativorans 1 0 1 0 species 334543 Psychrobacter arcticus 812 329 Psychrobacter cryohalolentis 330922 species 0 1 1 0 261164 399 Psychrobacter alimentarius species 0 85 1386 1 237669 Pseudomonadaceae 135621 family 286 Pseudomonas 229296 genus 8536 80 0 1 1105 Pseudomonas antarctica 219572 species 0 1 species group 34756 136845 0 6 Pseudomonas fulva 2654 47880 species 0 1 47885 Pseudomonas oryzihabitans 2287 species 1 0 0 1 species 3800 Pseudomonas mosselii 78327 1643 Pseudomonas plecoglossicida 70775 species 0 1 1 0 303 20046 Pseudomonas putida species 76759 Pseudomonas monteilii 4326 species 1 0 species 2351 Pseudomonas psychrotolerans 237610 0 1 65741 Pseudomonas knackmussii 2557 species 1 0 2 0 species group 136842 11167 1 0 species 587753 Pseudomonas chlororaphis 8465 species 2702 Pseudomonas fragi 296 0 1 1437 Pseudomonas lurida 244566 species 0 1 0 1 species 1548 Pseudomonas cerasi 1583341 0 2 species group 14021 136846 1 0 species subgroup 578833 12331 0 1 12331 Pseudomonas stutzeri 316 species 1 0 74829 Pseudomonas balearica 1690 species 157783 Pseudomonas cremoricolorata 1251 species 1 0 0 1 Pseudomonas alkylphenolica 1490 237609 species 0 1 species Pseudomonas entomophila 1412 312306 species group 29776 136841 0 6 1 0 species subgroup 1232139 3043 1149133 Pseudomonas furukawaii 3043 species 1 0 1 0 species 287 Pseudomonas aeruginosa 8639 species 53408 Pseudomonas citronellolis 5421 1 0 species 8067 Pseudomonas mendocina 300 0 1 1 0 43263 2429 Pseudomonas alcaligenes species species 53412 2177 Pseudomonas resinovorans 1 0 30 0 196821 49035 no rank species 1364 Pseudomonas sp. S-6-2 1931241 0 1 species 1856685 2256 Pseudomonas sp. TCU-HL1 1 0 0 1 species Pseudomonas sp. SWI6 1014 2083051 species 1207075 Pseudomonas sp. UW4 1311 1 0 2409 Pseudomonas sp. StFLB209 1028989 species 0 1 0 1 Pseudomonas sp. NC02 1469 2067572 species species 2083055 Pseudomonas sp. LH1G9 1809 1 0 1 0 2083054 1216 Pseudomonas sp. LG1D9 species species 1634 Pseudomonas sp. PONIH3 1636610 0 1 1 0 1981174 558 Pseudomonas sp. M30-35 species 919 Pseudomonas sp. GR 6-02 1659194 species 0 1 0 1 species Pseudomonas sp. SWI44 1208 2083053 2018067 Pseudomonas sp. FDAARGOS_380 1604 species 1 0 1 0 species 1500686 2418 Pseudomonas sp. Os17 species 1294143 Pseudomonas sp. ATCC 13867 3051 1 0 species Pseudomonas sp. St29 2342 1500687 0 1 species Pseudomonas sp. HLS-6 1020 2049589 0 1 0 1 Pseudomonas sp. LPH1 1911 1898684 species 0 1 species 1453 Pseudomonas sp. JY-Q 1338689 1 0 species 1930532 Pseudomonas sp. CC6-YY-74 1385 species 1259844 1691 Pseudomonas sp. FGI182 1 0 1451 Pseudomonas sp. VLB120 69328 species 0 1 1827300 1103 Pseudomonas sp. MYb193 species 1 0 1 0 1649877 2069 Pseudomonas sp. CCOS 191 species 0 1 species 1778 Pseudomonas sp. SWI36 2083052 1 0 1415630 Pseudomonas sp. TKP 1367 species 1718 Pseudomonas sp. XWY-1 2069256 species 0 1 1 0 species 1534110 Pseudomonas sp. DR 5-09 1543 1 0 species 1283291 2209 Pseudomonas sp. URMO17WK12:I11 0 1 species Pseudomonas sp. MRSN12121 1755 1611770 198620 Pseudomonas koreensis 2945 species 1 0 0 1 977 Pseudomonas versuta 1788301 species 136849 20147 species group 8 0 no rank 1200 2775504 0 1 1 0 1206777 1200 Pseudomonas sp. Lz4W species species 33069 Pseudomonas viridiflava 1584 1 0 species subgroup 8962 251695 0 1 1 0 species 317 Pseudomonas syringae 8962 species 1142 Pseudomonas avellanae 46257 0 1 0 1 species 2423 Pseudomonas syringae group genomosp. 3 251701 2 0 251698 3728 species subgroup 1 0 species 29438 Pseudomonas savastanoi 1828 1 0 species 47877 Pseudomonas amygdali 1900 0 1 species Pseudomonas cichorii 1108 36746 0 1 species 1448 Pseudomonas silesiensis 1853130 1 0 930166 3511 Pseudomonas brassicacearum species 1 0 157782 Pseudomonas parafulva 2706 species species group 30367 136843 0 9 0 1 species 17525 Pseudomonas fluorescens 294 1545 Pseudomonas mandelii 75612 species 0 1 1 0 76758 1129 Pseudomonas orientalis species 47879 Pseudomonas corrugata 1389 species 1 0 species Pseudomonas veronii 1303 76761 0 1 species 47878 Pseudomonas azotoformans 2321 1 0 0 1 species 1150 Pseudomonas poae 200451 species Pseudomonas protegens 2571 380021 0 1 species Pseudomonas trivialis 1434 200450 0 1 1 0 species 104087 Pseudomonas frederiksbergensis 3091 1 0 species 216142 1574 Pseudomonas rhizosphaerae 0 1 species 2088 Pseudomonas alcaliphila 101564 3 0 351 6359 subfamily 1 38 3 0 genus 352 Azotobacter 6359 4026 Azotobacter chroococcum 353 species 0 1 2295 Azotobacter vinelandii 354 species 0 1 1849530 628 genus 1 0 species 628 Oblitimonas alkaliphila 1697053 0 1 order 36763 Vibrionales 135623 1 0 43 15 1 0 42 319 family 36748 Vibrionaceae 641 1 25 2 0 genus 246861 Grimontia 908 0 1 Grimontia hollisae 883 673 species 511678 Aliivibrio 2117 genus 19 4 0 1 1 0 species 40269 Aliivibrio salmonicida 439 1 0 species 80852 Aliivibrio wodanis 877 0 1 782 Aliivibrio fischeri 668 species 662 Vibrio 29022 genus 409 30 0 1 species 674 Vibrio mimicus 1481 1 0 species 28173 Vibrio nigripulchritudo 735 1 0 Vibrio gazogenes 766 687 species 0 1 717610 10922 species group 10 0 0 1 species Vibrio harveyi 1178 669 2315253 1378 species subgroup 2 0 species 150340 Vibrio antiquarius 487 1 0 species 891 Vibrio diabolicus 50719 0 1 0 1 1098 Vibrio natriegens 691 species 680 1314 Vibrio campbellii species 1 0 0 1 363 Vibrio rotiferianus 190895 species 670 Vibrio parahaemolyticus 1854 species 1 0 species 2187 Vibrio alginolyticus 663 0 1 0 1 1141 Vibrio owensii 696485 species 1 0 766224 409 Vibrio jasicida species 1 0 species 676 1543 Vibrio fluvialis species 515 Vibrio tapetis 52443 0 1 0 1 species 871 Vibrio anguillarum 55601 Vibrio hyugaensis 464 1534743 species 0 1 Vibrio scophthalmi 588 45658 species 0 1 212663 436 Vibrio tasmaniensis species 1 0 2 0 2614977 1057 no rank 2014742 472 Vibrio sp. 2521-89 species 1 0 1 0 1116375 585 Vibrio sp. EJY3 species 0 1 species Vibrio furnissii 1346 29494 1 0 1891919 506 species group 0 1 506 Vibrio tubiashii 29498 species 190893 1490 Vibrio coralliilyticus species 1 0 672 Vibrio vulnificus 2524 species 1 0 0 1 Vibrio qinghaiensis 456 2025808 species species 553239 Vibrio breoganii 982 1 0 0 1 Vibrio tritonius 689 1435069 species 0 1 1242 Vibrio cholerae 666 species 0 4 11 1 3650 Photobacterium 657 genus 0 1 1515 Photobacterium gaetbulicola 1295392 species 74109 Photobacterium profundum 836 species 1 0 species 38293 1288 Photobacterium damselae 1 0 0 1 732 2042066 genus 1 0 1755811 732 Paraphotobacterium marinum species 15070 Thiotrichales 72273 order 0 33 55 1 4 0 family 135617 961 1 0 2 1 genus 481 Beggiatoa 1021 1 0 species 288004 Beggiatoa leptomitoformis 480 1 2 3 0 genus 40751 480 Thioploca Thioploca ingrica 477 40754 species 0 1 0 14 54 1 5034 Piscirickettsiaceae 135616 family 1 1 3 0 genus 933 Thiomicrospira 589 1 0 species 147268 248 Thiomicrospira cyclica 1 0 92245 Thiomicrospira aerophila 340 species 40222 1494 Methylophaga genus 3 5 0 1 0 1 species Methylophaga nitratireducenticrescens 1133 754476 1 0 754477 356 Methylophaga frappieri species 0 1 genus 829 1237 0 1 species Piscirickettsia salmonis 829 1238 genus Cycloclasticus 1264 34067 1 0 1 4 2 0 no rank 2621467 842 0 1 Cycloclasticus sp. P1 354 385025 species 0 1 488 Cycloclasticus sp. PY97N 728003 species species 421 Cycloclasticus zancles 1329899 0 1 1 2 9 0 genus 28884 804 Hydrogenovibrio species 39765 Hydrogenovibrio crunogenus 795 1 0 34064 Francisellaceae 9020 family 25 14 0 1 1869285 296 genus 1 0 species 594679 296 Allofrancisella guangzhouensis 1 0 1 0 12 50 genus 8699 Francisella 262 0 1 421 Francisella halioticida 549298 species 0 2 no rank 991 2610885 Francisella sp. MA067296 367 475375 species 0 1 1 0 species 1547445 Francisella sp. FSC1006 624 0 1 Francisella noatunensis 1017 657445 species 0 1 367 Francisella persica 954 species 0 1 species Francisella sp. TX077308 743 573569 263 Francisella tularensis 2038 species 1 0 1 0 species 28110 Francisella philomiragia 1399 1 0 species 622488 Francisella hispaniensis 570 0 1 species 601 Francisella sp. TX077310 573570 502 Francisella sp. CA97-1460 1542390 species 0 1 52 586 0 1 135613 40845 Chromatiales order 11 3 0 1 1676141 Wenzhouxiangellaceae 1640 family 30 2 0 1 1676142 Wenzhouxiangella 1629 genus 1 0 1579979 Wenzhouxiangella marina 1599 species family Woeseiaceae 688 1738654 1 0 12 3 Woeseia 676 1738655 genus 0 12 2 1 species 1548547 Woeseia oceani 664 1 0 family Granulosicoccaceae 1583 449719 1 0 3 3 437504 1580 Granulosicoccus genus 2 7 0 1 0 1 Granulosicoccus antarcticus 1573 437505 species family 14662 Chromatiaceae 1046 1 0 18 293 0 95 2 1 Marichromatium 2357 85076 genus 1 0 species 37487 2262 Marichromatium purpuratum 184 Candidatus Nitrosoglobus 1980513 genus 0 2 2 1 species 182 Candidatus Nitrosoglobus terrae 1630141 0 1 1 0 4 10 genus 1158 Nitrosococcus 1227 Nitrosococcus watsonii 314 473531 species 0 1 1 0 species 133539 288 Nitrosococcus halophilus species 1229 Nitrosococcus oceani 546 1 0 3332 Thiodictyon 53392 genus 0 2 30 1 Candidatus Thiodictyon syntrophicum 3302 1166950 species 0 1 0 1 no rank 1755 82569 0 1 species 1755 Chromatiaceae bacterium 2141T.STBD.0c.01a 1978339 13724 Thiocystis 1695 genus 50 2 0 1 73141 1645 Thiocystis violascens species 1 0 genus 1324 Thioflavicoccus 156885 1 0 2 28 1296 Thioflavicoccus mobilis 80679 species 0 1 1 3 2 0 genus 85072 Allochromatium 2564 species 1049 Allochromatium vinosum 2561 1 0 family Ectothiorhodospiraceae 17510 72276 1 0 279 18 genus 1686 Halorhodospira 85108 1 0 2 17 1053 Halorhodospira halophila 1669 species 1 0 1 0 3 22 genus 1402 Spiribacter 1335745 1335757 Spiribacter curvatus 1002 species 1 0 1 0 species 1335746 378 Spiribacter salinus 143 6 0 1 106633 Thioalkalivibrio 8604 genus 3079 Thioalkalivibrio sulfidiphilus 1033854 species 0 1 1 0 2621013 1405 no rank 396595 Thioalkalivibrio sp. K90mix 1405 species 1 0 0 1 Thioalkalivibrio nitratireducens 882 186931 species 0 1 species 1935 Thioalkalivibrio versutus 106634 1160 Thioalkalivibrio paradoxus 108010 species 0 1 0 2 49 1 2171 Alkalilimnicola 133193 genus species 351052 2122 Alkalilimnicola ehrlichii 1 0 16 2 0 1 1051 Ectothiorhodospira 2194 genus 1 0 2684909 2178 no rank 1 0 species 1442136 Ectothiorhodospira sp. BSL-9 2178 1174 Acidihalobacter 1765964 genus 0 2 21 1 species 1153 Acidihalobacter prosperus 160660 0 1 255526 1785 Halothiobacillaceae family 4 45 0 1 genus 109262 1740 Halothiobacillus 1 3 88 0 2636392 1121 no rank 1 0 0 1 species 1121 Halothiobacillus sp. LS2 1860122 1 0 species 927 531 Halothiobacillus neapolitanus 2391 451214 no rank 0 2 genus 1273155 Thiohalobacter 2391 1 45 2 0 585455 Thiohalobacter thiocyanaticus 2346 species 1 0 118884 5627 no rank 12 0 0 1 963 1524249 genus species 1249552 963 Pseudohongiella spirulinae 1 0 1608298 1234 Thiolapillus genus 2 19 0 1 0 1 species 1215 Thiolapillus brandeum 1076588 32036 931 clade 3 0 Calyptogena okutanii thioautotrophic gill symbiont 207 410330 species 0 1 1 0 113267 449 Bathymodiolus septemdierum thioautotrophic gill symbiont species 275 1541743 genus 0 1 species 386487 275 Candidatus Ruthia magnifica 1 0 0 3 1 1 496 Candidatus Thioglobus 655184 genus 1 0 1705394 Candidatus Thioglobus autotrophicus 253 species 1 0 species 1427364 242 Candidatus Thioglobus singularis 1 0 clade 198346 514 186490 514 Candidatus Baumannia cicadellinicola species 1 0 genus 349742 Sedimenticola 1489 1 6 2 0 0 1 species Sedimenticola thiotaurini 1483 1543721 118969 Legionellales 9324 order 13 21 0 1 family Legionellaceae 8338 444 1 0 26 15 1 2 1 0 genus 465 667 Tatlockia 0 1 Tatlockia micdadei 666 451 species 7645 Legionella 445 genus 0 12 37 1 0 1 species 533 Legionella oakridgensis 29423 1 0 2005262 Legionella endosymbiont of Polyplax serrata 133 species 1 0 species 452 Legionella spiritensis 470 1 0 96230 665 Legionella fallonii species species 2747 Legionella pneumophila 446 0 1 species Legionella lansingensis 513 45067 0 1 0 1 626 Legionella hackeliae 449 species 28087 420 Legionella sainthelensi species 1 0 1867846 449 Legionella clemsonensis species 1 0 1 0 66969 577 Legionella waltersii species 0 1 Legionella longbeachae 475 450 species family Coxiellaceae 973 118968 1 0 1 5 1 0 no rank 134284 203 1592897 203 Coxiella-like endosymbiont species 1 0 1 0 3 3 genus 769 Coxiella 776 0 1 605 Coxiella burnetii 777 species no rank 2676648 161 1 0 161 Coxiella endosymbiont of Amblyomma americanum 325775 species 0 1 0 2132 244 1 Enterobacterales 410079 91347 order family 1903409 34746 Erwiniaceae 1 28 110 0 0 2 3 1 364 Wigglesworthia 51228 genus 1 0 species 51229 361 Wigglesworthia glossinidia 2 0 genus 2100764 4039 665913 Pantoea calida 2036 species 1 0 Pantoea gaviniae 2003 665914 species 0 1 genus 800 Tatumella 82986 1 0 2 22 species 53336 778 Tatumella citrea 1 0 genus Erwinia 8327 551 1 0 314 8 2622719 948 no rank 1 0 species 215689 Erwinia sp. Ejp617 948 1 0 species 114 Candidatus Erwinia sp. ErCipseudotaxifoliae 1922217 0 1 0 1 792 Erwinia pyrifoliae 79967 species 338565 1630 Erwinia tasmaniensis species 1 0 2131 Erwinia billingiae 182337 species 0 1 species Erwinia amylovora 889 552 0 1 species 1619313 Erwinia gerundensis 1509 1 0 Buchnera 3215 32199 genus 0 4 2 1 Buchnera aphidicola 3211 9 species 0 1 1 0 670 11 genus Pantoea 17891 53335 0 1 species Pantoea ananatis 1745 553 species 1076550 971 Pantoea rwandensis 1 0 1 0 species group 1654067 2819 species 549 Pantoea agglomerans 2819 1 0 no rank 5375 2630326 0 3 0 1 Pantoea sp. At-9b 2041 592316 species 1396 Pantoea sp. PSNIH1 1484158 species 0 1 species 1938 Pantoea sp. PSNIH2 1484157 0 1 species 1891675 Pantoea alhagi 1279 1 0 0 1 Candidatus Pantoea carbekii 367 1235990 species 1 0 species 66269 Pantoea stewartii 1297 0 1 species 3368 Pantoea vagans 470934 family 240013 Enterobacteriaceae 543 1 0 116 1996 3 2 0 1 1335483 Shimwellia 1943 genus species 1940 Shimwellia blattae 563 0 1 5910 Lelliottia 1330545 genus 0 4 58 1 1 0 species 69220 Lelliottia nimipressuralis 1583 61646 Lelliottia amnigena 2876 species 1 0 1393 Lelliottia jeotgali 1907578 species 0 1 genus 1330546 Pluralibacter 5967 1 52 3 0 species Pluralibacter gergoviae 3848 61647 0 1 1334193 [Enterobacter] lignolyticus 2067 species 1 0 36866 7414 no rank 5 0 693444 Enterobacteriaceae bacterium strain FGI 57 1393 species 1 0 0 1 Enterobacteriaceae bacterium ENNIH2 1553 1920109 species 1530 Enterobacteriaceae bacterium ENNIH3 1920128 species 0 1 species 1392 Plautia stali symbiont 891974 0 1 1 0 2066051 Enterobacteriaceae bacterium ENNIH1 1546 species genus 570 40626 Klebsiella 1 10 1313 0 0 1 species 3270 Klebsiella aerogenes 548 Klebsiella quasipneumoniae 2448 1463165 species 0 1 4574 2608929 no rank 0 2 1 0 1905288 1725 Klebsiella sp. LTGPAF-6F species 0 1 2849 Klebsiella sp. M5al 1934254 species 0 1 species Klebsiella michiganensis 3656 1134687 0 1 1995 Klebsiella quasivariicola 2026240 species 0 1 species 11556 Klebsiella pneumoniae 573 0 1 species Klebsiella variicola 4295 244366 species 7519 Klebsiella oxytoca 571 0 1 2 20 0 1 158483 5073 Cedecea genus species 5053 Cedecea neteri 158822 0 1 1441 579 genus 0 1 0 1 1441 Kluyvera intermedia 61648 species 1 170 5 0 genus 561 Escherichia 18464 208962 Escherichia albertii 2164 species 1 0 0 1 1212 Escherichia marmotae 1499973 species species 564 Escherichia fergusonii 982 1 0 1 0 species 562 13936 Escherichia coli 0 231 4 1 Leclercia 4977 83654 genus 0 1 1415 Leclercia adecarboxylata 83655 species no rank 2627398 3331 2 0 species 1854 Leclercia sp. LSNIH1 1920114 0 1 0 1 Leclercia sp. LSNIH3 1477 1920116 species 1 14 943 0 genus 544 34975 Citrobacter 0 1 4103 Citrobacter amalonaticus 35703 species 1 0 545 Citrobacter koseri 1550 species 2 0 no rank 2644389 5200 1 0 1920110 1329 Citrobacter sp. CFNIH10 species 1 0 species 1702170 3871 Citrobacter sp. FDAARGOS_156 species group 1344959 19694 7 0 8308 Citrobacter freundii 546 species 0 1 0 1 species 2858 Citrobacter braakii 57706 Citrobacter werkmanii 2235 67827 species 0 1 2077147 1227 Citrobacter freundii complex sp. CFNIH3 species 1 0 2077149 Citrobacter freundii complex sp. CFNIH9 2231 species 1 0 species 2066049 1173 Citrobacter freundii complex sp. CFNIH2 1 0 species Citrobacter freundii complex sp. CFNIH4 1662 2077148 0 1 0 1 species Citrobacter rodentium 1904 67825 1581 Citrobacter farmeri 67824 species 0 1 0 1 531 409304 genus 1 0 species 168169 531 Candidatus Ishikawaella capsulata 1 0 29 3 genus Salmonella 8886 590 Salmonella bongori 1366 54736 species 0 1 0 1 7491 Salmonella enterica 28901 species 1 0 22 2807 genus 66532 Enterobacter 547 0 9 11752 2608935 no rank 1560339 637 Enterobacter sp. E20 species 1 0 species Enterobacter sp. HK169 806 1868135 0 1 1 0 1166130 1512 Enterobacter sp. R4-368 species 1914861 Enterobacter sp. SA187 1703 species 1 0 0 1 species Enterobacter sp. 638 1152 399742 species Enterobacter sp. ODB01 1346 1827481 0 1 0 1 Enterobacter sp. FY-07 1712 1692238 species species 2256 Enterobacter sp. CRENT-193 2051905 0 1 species Enterobacter sp. Crenshaw 628 1977566 0 1 0 12 51973 354276 species group species 1269 Enterobacter kobei 208224 0 1 22153 Enterobacter cloacae 550 species 0 1 69218 1398 Enterobacter cancerogenus species 1 0 1812935 Enterobacter cloacae complex 'Hoffmann cluster IV' 856 species 1 0 0 1 species Enterobacter ludwigii 1122 299767 0 3 no rank 3221 2757714 1 0 species 1915310 Enterobacter cloacae complex sp. ECNIH7 1001 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1086 2077137 0 1 0 1 species Enterobacter cloacae complex bacterium 1134 2027919 3495 Enterobacter asburiae 61645 species 0 1 18459 Enterobacter hormaechei 158836 species 0 3 6759 1 1 0 1812934 9662 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 1296536 Enterobacter xiangfangensis 2038 subspecies 1 0 0 137 4 1 Shigella 3506 620 genus 1079 2629414 no rank 0 1 0 1 species Shigella sp. PAMC 28760 1079 1813821 1 0 623 823 Shigella flexneri species Shigella dysenteriae 1467 622 species 0 1 0 5 93 1 7873 Kosakonia 1330547 genus 0 1 species 1523 Kosakonia sacchari 1158459 0 1 species 2770 Kosakonia cowanii 208223 0 1 species Kosakonia radicincitans 2089 283686 1 0 497725 Kosakonia oryzae 1398 species genus 220 401618 0 1 1 0 401619 220 Candidatus Riesia pediculicola species 17 0 no rank 191675 3728 17 0 clade 84563 3728 clade 146507 870 3 0 0 1 species 180 secondary endosymbiont of Heteropsylla cubana 134287 0 1 genus 207 568987 Candidatus Hamiltonella defensa 207 138072 species 0 1 483 secondary endosymbiont of Ctenarytaina eucalypti 1199245 species 0 1 genus 359 1906661 0 1 1 0 species 1070130 Candidatus Gullanella endobia 359 108 1906659 genus 0 1 108 Candidatus Hoaglandella endobia 1778263 species 0 1 0 7 1224 84564 clade 203804 1224 Candidatus Blochmannia genus 7 3 0 1 no rank 711328 529 2 0 271 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 species 0 1 0 1 258 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 species 143 Candidatus Blochmannia floridanus 203907 species 0 1 1 0 species 101534 Candidatus Blochmannia pennsylvanicus 169 species 202 Candidatus Blochmannia vafer 251535 0 1 178 Candidatus Blochmannia chromaiodes 251542 species 0 1 1 0 1682492 239 genus 0 1 Candidatus Tachikawaea gelatinosa 239 1410383 species genus 1906657 343 Candidatus Doolittlea 1 2 3 0 1 0 1778262 340 Candidatus Doolittlea endobia species genus 243 1906660 0 1 1 0 species 1778264 Candidatus Mikella endobia 243 clade 342 199891 0 1 0 1 species 342 secondary endosymbiont of Trabutina mannipara 1835721 1 3 60 0 genus 160674 7066 Raoultella 575 2082 Raoultella planticola species 1 0 species 54291 4924 Raoultella ornithinolytica 1 0 1 0 genus 1048757 79 1048758 79 Candidatus Moranella endobia species 1 0 0 375 8 1 Cronobacter 12806 413496 genus species Cronobacter malonaticus 1315 413503 0 1 species 1373 Cronobacter universalis 535744 0 1 1 0 28141 2822 Cronobacter sakazakii species species 1571 Cronobacter dublinensis 413497 0 1 413501 Cronobacter muytjensii 2237 species 1 0 1163710 Cronobacter condimenti 1770 species 1 0 Cronobacter turicensis 1343 413502 species 0 1 1 0 39 213 family 66647 Yersiniaceae 1903411 1 0 1959 16 genus Serratia 46748 613 species 47917 3795 Serratia fonticola 1 0 no rank 2647522 16471 8 0 Serratia sp. AS13 1347 768493 species 0 1 species 768490 1347 Serratia sp. AS12 1 0 1 0 488142 Serratia sp. SCBI 2748 species 0 1 species Serratia sp. MYb239 2160 2033438 0 1 Serratia sp. SSNIH1 2431 1758196 species species 2406 Serratia sp. FGI94 671990 0 1 1229 Serratia sp. ATCC 39006 104623 species 0 1 1 0 1327989 2803 Serratia sp. FS14 species 1 0 615 10842 Serratia marcescens species 0 1 species 5049 Serratia plymuthica 82996 Serratia liquefaciens 1871 614 species 0 1 Serratia rubidaea 2617 61652 species 0 1 0 1 species 2920 Serratia ficaria 61651 species 28151 Serratia proteamaculans 1224 1 0 1745211 1458 Chania genus 2 6 0 1 0 1 species Chania multitudinisentens 1452 1639108 genus 929812 Gibbsiella 1990 1 5 2 0 1 0 929813 1985 Gibbsiella quercinecans species 276 13 0 1 629 Yersinia 12020 genus 743 Yersinia aldovae 29483 species 0 1 0 1 no rank 435 2653513 species 435 Yersinia sp. FDAARGOS_228 1839800 0 1 1 0 29486 925 Yersinia ruckeri species Yersinia enterocolitica 2716 630 species 0 1 Yersinia aleksiciae 787 263819 species 0 1 0 1 species 816 Yersinia rohdei 29485 species group 1649845 1883 3 0 0 1 species 916 Yersinia pseudotuberculosis 633 632 Yersinia pestis 537 species 1 0 1 0 367190 Yersinia similis 430 species species 28152 755 Yersinia kristensenii 1 0 1 0 631 490 Yersinia intermedia species 29484 Yersinia frederiksenii 2194 species 1 0 genus 1565532 Rouxiella 32 1 0 4 108 0 1 34037 4186 Rahnella genus 2770 2635087 no rank 0 2 1 0 species 1805933 Rouxiella sp. ERMR1:05 1556 0 1 species 1214 Rahnella sp. Y9602 741091 species 1308 Rahnella aquatilis 34038 0 1 Hafniaceae 17900 1903412 family 0 28 14 1 82982 Obesumbacterium 996 genus 78 2 0 1 species 82983 918 Obesumbacterium proteus 1 0 Edwardsiella 13861 635 genus 0 741 8 1 0 2 no rank 3511 2676541 0 1 species 1979 Edwardsiella sp. EA181011 1578828 species 1650654 Edwardsiella sp. LADL05-105 1532 1 0 1263550 Edwardsiella piscicida 1842 species 1 0 species 93378 Edwardsiella hoshinae 1595 1 0 Edwardsiella tarda 3098 636 species 0 1 species 67780 1513 Edwardsiella ictaluri 1 0 1561 Edwardsiella anguillarum 1821960 species 0 1 1 3 21 0 genus 568 3015 Hafnia 2257 Hafnia alvei 569 species 0 1 1 0 no rank 2621980 737 0 1 Hafnia sp. CBA7124 737 1848580 species 21 47 0 1 1903414 15503 Morganellaceae family genus Photorhabdus 2588 29487 1 0 33 4 0 1 species 819 Photorhabdus luminescens 29488 species Photorhabdus asymbiotica 946 291112 0 1 species 574560 Photorhabdus temperata 790 1 0 1 0 genus 637 218 species 634113 Arsenophonus symbiont of Lipoptena fortisetosa 218 1 0 Morganella 2697 581 genus 0 87 2 1 0 1 species 2610 Morganella morganii 582 586 Providencia 3022 genus 11 4 0 1 0 1 860 Providencia rettgeri 587 species 588 1479 Providencia stuartii species 1 0 species 126385 672 Providencia alcalifaciens 1 0 genus 1899 Proteus 583 1 0 3 23 species 585 678 Proteus vulgaris 1 0 species 584 Proteus mirabilis 1198 1 0 genus 626 Xenorhabdus 5032 1 85 6 0 species Xenorhabdus bovienii 1601 40576 0 1 species 628 1031 Xenorhabdus nematophila 1 0 1 0 40577 Xenorhabdus poinarii 652 species 1 0 species 351671 931 Xenorhabdus doucetiae species 732 Xenorhabdus hominickii 351679 0 1 no rank 451511 1730 2 0 Plesiomonas 1730 702 genus 0 63 2 1 1 0 703 Plesiomonas shigelloides 1667 species 1 20 182 0 family 1903410 30731 Pectobacteriaceae 122277 11899 Pectobacterium genus 6 392 0 1 species 2042057 Pectobacterium polaris 2179 1 0 1 0 1905730 1338 Pectobacterium parmentieri species 0 1 species 5270 Pectobacterium carotovorum 554 Pectobacterium atrosepticum 1480 29471 species 0 1 1 0 55208 1240 Pectobacterium wasabiae species 1 0 6 384 genus 12824 Dickeya 204037 Dickeya dianthicola 1898 204039 species 0 1 species 1089444 3925 Dickeya solani 1 0 0 1 species Dickeya fangzhongdai 1922 1778540 0 1 Dickeya zeae 2591 204042 species species Dickeya dadantii 2104 204038 0 1 1 0 5 123 genus 3710 Sodalis 84565 1 0 species 63612 Sodalis glossinidius 1244 1235 Sodalis praecaptivus 1239307 species 0 1 1 0 1929246 194 Sodalis endosymbiont of Henestaris halophilus species species 914 Candidatus Sodalis pierantonius 1486991 0 1 71655 2116 Brenneria genus 2 8 0 1 species 1109412 Brenneria goodwinii 2108 1 0 1903416 Budviciaceae 677 family 1 3 0 1 0 16 2 1 Pragia 676 82984 genus species Pragia fontium 660 82985 0 1 class Zetaproteobacteria 2215 580370 1 0 8 6 0 5 56 1 2207 Mariprofundales 580371 order 2151 Mariprofundaceae 580372 family 0 4 11 1 genus 377315 Mariprofundus 2140 1 9 3 0 species Mariprofundus ferrinatatus 985 1921087 0 1 1146 Mariprofundus aestuarium 1921086 species 0 1 subphylum 68525 316503 195 0 class Epsilonproteobacteria 87693 29547 1 0 153 70 order 2057 Nautiliales 235899 1 0 5 18 224467 Nautiliaceae 1326 family 4 3 0 1 0 6 2 1 Nautilia 1322 191291 genus 0 1 Nautilia profundicola 1316 244787 species 713 2795691 family 0 1 1 0 genus 269258 713 0 1 no rank 713 2624044 1 0 387092 Nitratiruptor sp. SB155-2 713 species order 213849 Campylobacterales 85483 1 2091 64 0 1 0 41 5440 family 70174 Campylobacteraceae 72294 no rank 6953 2321108 0 5 genus Arcobacter 3360 28196 1 0 19 3 0 1 Arcobacter butzleri 2065 28197 species 0 1 Arcobacter nitrofigilis 1276 28199 species 1740 2321207 no rank 0 1 species 1740 Arcobacter sp. L 944547 0 1 0 1 1853 2321187 genus 1 0 species 1850254 1853 Arcobacter sp. LPB0137 26 720 0 1 194 53185 Campylobacter genus 1957 2593542 no rank 0 4 1 0 species 1660073 Campylobacter sp. RM6137 329 species Campylobacter sp. RM12175 452 1660076 0 1 0 1 species Campylobacter sp. RM16704 668 1500960 0 1 species 508 Campylobacter sp. RM8964 1660074 1 0 197 12137 Campylobacter jejuni species 1 0 76517 Campylobacter hominis 599 species 1 0 206 1310 Campylobacter sputorum species species 454 Campylobacter ureolyticus 827 0 1 199 706 Campylobacter concisus species 1 0 Campylobacter hyointestinalis 396 198 species 0 1 260714 Campylobacter insulaenigrae 516 species 1 0 824 736 Campylobacter gracilis species 1 0 0 1 Campylobacter lanienae 1630 75658 species species 254 Campylobacter avium 522485 0 1 1 0 28898 772 Campylobacter helveticus species 1 0 200 572 Campylobacter curvus species 925 Campylobacter peloridis 488546 species 0 1 Campylobacter cuniculorum 693 374106 species 0 1 species Campylobacter pinnipediorum 1042 1965231 0 1 1 0 species 201 1609 Campylobacter lari 196 1207 Campylobacter fetus species 1 0 Campylobacter volucris 1021 1031542 species 0 1 548 Campylobacter subantarcticus 497724 species 0 1 195 Campylobacter coli 22898 species 1 0 species 1244531 483 Campylobacter iguaniorum 1 0 Sulfurospirillum 4596 57665 genus 0 93 9 1 3 0 no rank 2618290 1741 1581011 Sulfurospirillum sp. UCH001 499 species 1 0 705 Sulfurospirillum sp. JPD-1 220622 species 0 1 1 0 species 1986224 537 Sulfurospirillum sp. SL2-1 Sulfurospirillum barnesii 599 44674 species 0 1 species 366522 Sulfurospirillum cavolei 560 1 0 0 1 568 Sulfurospirillum multivorans 66821 species species Sulfurospirillum halorespirans 650 194424 0 1 1 0 65553 Sulfurospirillum deleyianum 385 species family 2776 2771472 0 4 genus 1285 265570 0 2 561 2646778 no rank 0 1 0 1 species Sulfurovum sp. NBC37-1 561 387093 species 206403 Sulfurovum lithotrophicum 724 1 0 genus 1491 Nitratifractor 269260 1 0 2 1 1 0 269261 1490 Nitratifractor salsuginis species 0 4 2127 2771471 family 286130 874 genus 1 0 148813 Sulfuricurvum kujiense 874 species 1 0 genus 202746 1253 Sulfurimonas 1 3 3 0 0 1 718 Sulfurimonas autotrophica 202747 species Sulfurimonas denitrificans 532 39766 species 0 1 family 8315 Helicobacteraceae 72293 1 0 14 22 209 7766 Helicobacter genus 12 14 0 1 1 0 2593540 383 no rank 222136 383 Helicobacter sp. MIT 01-6242 species 1 0 0 1 Helicobacter pylori 3000 210 species 1591088 Helicobacter himalayensis 448 species 1 0 315 Helicobacter mustelae 217 species 0 1 0 1 species Helicobacter cetorum 736 138563 459 Helicobacter bilis 37372 species 0 1 0 1 species Helicobacter acinonychis 272 212 0 1 Helicobacter typhlonius 414 76936 species 0 1 Helicobacter hepaticus 996 32025 species species 214 Helicobacter felis 325 1 0 species 213 Helicobacter cinaedi 404 1 0 0 1 genus 527 843 0 1 species 527 Wolinella succinogenes 844 class 28221 228810 Deltaproteobacteria 1 125 643 0 4 37 0 1 453227 5043 Desulfarculales order 0 66 3 1 Desulfarculaceae 5006 453228 family genus 4940 Desulfarculus 453229 1 0 2 57 species Desulfarculus baarsii 4883 453230 0 1 order 18058 Desulfobacterales 213118 1 0 18 135 1 63 9 0 family 213119 Desulfobacteraceae 10260 2 1 0 1 2295 1964 Desulfobacterium genus species 2296 Desulfobacterium autotrophicum 1963 1 0 genus 1693 28222 0 1 28223 1693 Desulfobacula toluolica species 1 0 genus 218207 Desulfatibacillum 2114 1 1 2 0 species Desulfatibacillum alkenivorans 2113 259354 0 1 genus 896 4426 Desulfococcus 1 3 14 0 1 0 181663 2701 Desulfococcus oleovorans species Desulfococcus multivorans 1711 897 species 0 1 family Desulfobulbaceae 7663 213121 1 0 50 8 0 1 genus 878 109168 Desulfotalea psychrophila 878 84980 species 0 1 893 Desulfobulbus 3082 genus 6 2 0 1 species Desulfobulbus sp. ORNL 3076 1986146 0 1 427922 2644 Desulfurivibrio genus 2 20 0 1 0 1 species 2624 Desulfurivibrio alkaliphilus 427923 1 0 3 2 genus Desulfocapsa 1009 53318 1 0 species 65555 Desulfocapsa sulfexigens 1006 0 4 order 1593 213113 1 4 4 0 family 117942 Desulfurellaceae 1593 1 2 18 0 genus 33001 1069 Desulfurella 1 0 species 33002 1051 Desulfurella acetivorans 1 0 genus 84404 520 1 0 84405 520 Hippea maritima species 38 1118 0 1 29 74291 Myxococcales order 8 0 suborder 80812 12188 0 95 5 1 Polyangiaceae 10119 49 family genus 2305 Chondromyces 50 1 0 2 6 0 1 species 2299 Chondromyces crocatus 52 genus 39643 Sorangium 7719 1 88 2 0 0 1 species 7631 Sorangium cellulosum 56 1055686 2069 Sandaracinaceae family 3 62 0 1 genus 1055688 Sandaracinus 2007 1 13 2 0 927083 Sandaracinus amylolyticus 1994 species 1 0 suborder 3561 224462 0 3 0 3 22 1 3561 Kofleriaceae 224464 family 1 2 43 0 genus 162027 3539 Haliangium species Haliangium ochraceum 3496 80816 0 1 26 0 80811 57424 suborder family 16082 Archangiaceae 39 1 0 9 349 genus 44 3627 Melittangium 1 2 31 0 species 3596 Melittangium boletus 83453 0 1 62 2 0 1 47 Archangium 4200 genus 0 1 species Archangium gephyra 4138 48 40 Stigmatella 3848 genus 24 2 0 1 1 0 species 41 Stigmatella aurantiaca 3824 42 4058 Cystobacter genus 2 69 0 1 0 1 species 3989 Cystobacter fuscus 43 family 11492 Anaeromyxobacteraceae 1524215 1 0 5 53 1 0 4 281 genus 11439 Anaeromyxobacter 161492 0 1 species 5371 Anaeromyxobacter dehalogenans 161493 0 2 5787 2620896 no rank 0 1 2564 Anaeromyxobacter sp. Fw109-5 404589 species 1 0 species 447217 3223 Anaeromyxobacter sp. K 9 155 0 1 31 27871 Myxococcaceae family 1 756 5 0 genus 32 Myxococcus 18730 species 3560 Myxococcus xanthus 34 0 1 1 0 1297742 Myxococcus hansupus 3569 species 0 1 7372 Myxococcus fulvus 33 species 83455 Myxococcus stipitatus 3473 species 1 0 genus Corallococcus 8986 83461 1 0 193 3 35 4012 Myxococcus macrosporus species 1 0 184914 4781 Corallococcus coralloides species 1 0 family 1524213 Vulgatibacteraceae 1979 1 21 3 0 1 2 41 0 genus 1524214 1958 Vulgatibacter 0 1 1917 Vulgatibacter incomptus 1391653 species 1 146 10 0 order 213462 Syntrophobacterales 5774 1 0 3 15 family 1956 Syntrophobacteraceae 213465 0 2 32 1 1941 Syntrophobacter 29526 genus species 1909 Syntrophobacter fumaroxidans 119484 0 1 Syntrophaceae 3672 213468 family 0 34 6 1 43773 1373 Syntrophus genus 2 3 0 1 1370 Syntrophus aciditrophicus 316277 species 0 1 genus 2357 1051 Desulfomonile 1 2 2 0 0 1 species Desulfomonile tiedjei 1049 2358 1 0 60892 1214 genus 60893 1214 Desulfobacca acetoxidans species 1 0 1 0 650 26 order Desulfovibrionales 75221 213115 1 4 94 0 family 213116 5468 Desulfomicrobiaceae 1 0 3 33 genus 5374 Desulfomicrobium 898 1 0 132132 Desulfomicrobium orale 2501 species 899 Desulfomicrobium baculatum 2840 species 1 0 194924 67855 Desulfovibrionaceae family 18 430 0 1 1 0 genus 2794998 2124 1 0 880 2124 Desulfovibrio salexigens species 0 1 3144 2582840 genus 873 Desulfovibrio africanus 3144 species 1 0 genus Pseudodesulfovibrio 12498 2035811 1 0 66 4 1 0 182210 Pseudodesulfovibrio aespoeensis 4108 species species Pseudodesulfovibrio indicus 5361 1716143 0 1 Pseudodesulfovibrio profundus 2963 57320 species 0 1 genus Lawsonia 1042 41707 1 0 2 2 0 1 species Lawsonia intracellularis 1040 29546 9 450 0 1 872 48617 Desulfovibrio genus 1 0 species 184917 Desulfovibrio magneticus 4598 1 0 2593640 2953 no rank 1 0 631220 2953 Desulfovibrio sp. G11 species 11906 Desulfovibrio vulgaris 881 species 0 1 1531 Candidatus Desulfovibrio trichonymphae 1725232 species 0 1 species 44742 Desulfovibrio fairfieldensis 6328 1 0 901 Desulfovibrio piger 8951 species 1 0 1 0 species 876 8218 Desulfovibrio desulfuricans 58180 3682 Desulfovibrio alaskensis species 1 0 213117 Desulfohalobiaceae 1248 family 1 3 0 1 genus Desulfohalobium 1247 45662 1 0 3 2 0 1 1244 Desulfohalobium retbaense 45663 species 1 24 760 0 order 69541 48187 Desulfuromonadales family 213421 Desulfuromonadaceae 15795 1 255 9 0 1 0 59 5 genus Pelobacter 10154 18 1 0 29543 Pelobacter propionicus 4167 species species 2152 Pelobacter acetylenicus 29542 0 1 1 0 no rank 2620299 1841 1 0 1842532 1841 Pelobacter sp. SFB93 species 1 0 species 19 Pelobacter carbinolicus 1935 genus 890 5386 Desulfuromonas 1 3 66 0 1603606 Desulfuromonas soudanensis 2641 species 1 0 1 0 no rank 2614637 2679 1 0 1823759 2679 Desulfuromonas sp. DDH964 species Geobacteraceae 31632 213422 family 0 286 14 1 0 11 521 1 27993 Geobacter 28231 genus 1 0 345632 2486 Geobacter pickeringii species 0 1 species 2624 Geobacter sulfurreducens 35554 313985 Geobacter lovleyi 2935 species 1 0 6786 2627627 no rank 0 2 1 0 443144 Geobacter sp. M21 2882 species 1 0 443143 Geobacter sp. M18 3904 species species 2997 Geobacter bemidjiensis 225194 0 1 0 1 Geobacter daltonii 2064 1203471 species 2703 Geobacter anodireducens 1340425 species 0 1 Geobacter metallireducens 2743 28232 species 0 1 0 1 species Geobacter uraniireducens 2134 351604 3353 Geoalkalibacter 392332 genus 0 2 11 1 0 1 species 3342 Geoalkalibacter subterraneus 483547 74152 Elusimicrobia 2303 phylum 5 9 0 1 439 99260 no rank 0 1 1 0 species 167965 439 uncultured Termite group 1 bacterium 0 5 class 1229 447830 order 1783344 Endomicrobiales 1229 1 3 5 0 4 17 0 1 1783343 1226 Endomicrobiaceae family 1408194 Endomicrobium 1209 genus 1 3 0 1 Candidatus Endomicrobium trichonymphae 476 1408204 species 0 1 732 Endomicrobium proavitum 1408281 species 0 1 0 2 class 630 641853 2 2 0 1 641854 Elusimicrobiales 630 order 641876 628 family 1 0 628 423604 genus 0 1 423605 628 Elusimicrobium minutum species 1 0 7 0 200940 2124 phylum 1 5 7 0 class 67799 Thermodesulfobacteria 2124 6 7 0 1 188710 2119 Thermodesulfobacteriales order 188711 Thermodesulfobacteriaceae 2112 family 10 5 0 1 genus 241192 789 1 0 789 Thermodesulfatator indicus 171695 species 0 1 2 0 genus 1740 1013 0 1 species 306 Thermodesulfobacterium commune 1741 1 0 1295609 707 Thermodesulfobacterium geofontis species 0 1 300 444090 genus 0 1 species 300 Caldimicrobium thiodismutans 1653476