members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4818 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 20437959 31 44583 0 2157 superkingdom 284 81836 71 clade 1783276 0 1 71 phylum 1801631 0 1 71 genus 0 2490204 1 Candidatus Micrarchaeota archaeon Mia14 71 1 species 1920749 0 phylum 1 0 28890 231 73025 13 Euryarchaeota 10 0 183980 1 class Archaeoglobi 28 1778 1750 9 order 0 2231 2232 0 1 family 9 3 1750 Archaeoglobaceae genus 190818 0 2 383 148 Geoglobus acetivorans 0 565033 species 1 235 Geoglobus ahangari 0 113653 species 1 1135 4 2233 0 genus 105 Archaeoglobus profundus species 84156 0 1 species 0 2234 1 393 Archaeoglobus fulgidus 1 58290 0 species Archaeoglobus veneficus 119 1 0 1316941 species Archaeoglobus sulfaticallidus 518 1 229 Ferroglobus 0 54260 1 genus 2 228 Ferroglobus placidus 0 54261 species 1 0 2290931 clade 115 39412 Halobacteria 18259 98 66 0 183963 class 1 Haloferacales 5560 81 18 order 1 1644055 0 0 1963271 1 family 8 15 1989 Halorubraceae Halorubrum 792 14 3 0 56688 genus 1 459 Halorubrum trapanicum species 0 29284 1 0 2247 species 1 319 Halorubrum lacusprofundi 1 genus 1209988 0 2 15 453 Halopenitus 438 Halopenitus persicus 0 1048396 species 1 genus 1 1644057 0 2 729 2 Salinigranum Salinigranum rubrum 727 1 0 755307 species 1 2678336 0 no rank 408 1 species 0 756883 halophilic archaeon DL31 408 3082 4 Haloferacaceae family 1 1644056 0 8 1 genus 0 293431 435 435 Haloquadratum walsbyi 293091 0 species 1 17 2121 Haloferax 0 2251 1 genus 4 35746 0 species 1 699 Haloferax gibbonsii 632 Haloferax mediterranei 0 2252 species 1 773 Haloferax volcanii species 0 2246 1 0 60846 genus 1 2 522 4 Halogeometricum species 0 60847 1 518 Halogeometricum borinquense 20 0 1644060 1 order Natrialbales 45 5484 19 family 1 0 1644061 Natrialbaceae 5439 64 965 4 Natrinema genus 1 0 88723 3 1 species 0 69525 Natrinema pellirubrum 484 477 1 2622230 0 no rank 0 406552 species 1 477 Natrinema sp. J7-2 497 1 genus 1269201 0 497 no rank 0 2621923 1 497 Salinarchaeum sp. Harcht-Bsk1 1333523 0 species 1 3 496 Natronococcus 1 genus 0 29287 2 species 29288 0 1 493 Natronococcus occultus Natrialba 523 1 2 63742 0 genus 1 522 Natrialba magadii species 13769 0 1 1 genus 2256 0 318 Natronobacterium gregoryi 318 1 species 0 44930 Halostagnicola 4 360 2 0 353799 1 genus species 0 353800 1 356 Halostagnicola larsenii 387342 0 genus 1 2 638 10 Halopiger 1 0 387343 species Halopiger xanaduensis 628 1 genus 0 203193 2 2 628 Halobiforma Halobiforma lacisalsi 626 1 species 229731 0 3 121871 0 1 genus Haloterrigena 15 950 Haloterrigena turkmenica 568 1 species 0 62320 Haloterrigena daqingensis 367 1 0 588898 species 7117 60 Halobacteriales 0 2235 order 1 27 10 family 1 0 2236 Halobacteriaceae 2336 9 167 1656823 0 genus 1 167 Halanaeroarchaeum sulfurireducens 0 1604004 species 1 314 2 Halodesulfurarchaeum 0 1980514 genus 1 2 species 0 1873524 1 312 Halodesulfurarchaeum formicicum 10 1393 Halobacterium 1 genus 2239 0 4 523 Halobacterium hubeiense species 1407499 0 1 Halobacterium salinarum 341 1 0 2242 species 519 1 2668073 0 no rank 519 Halobacterium sp. DL1 species 0 751944 1 1 genus 332246 0 2 7 453 Halalkalicoccus 1 0 413810 species Halalkalicoccus jeotgali 446 1 family 0 1963268 16 210 4721 Haloarculaceae 1 genus 0 2237 5 59 2112 Haloarcula Haloarcula marismortui 472 1 0 2238 species 617 Haloarcula hispanica species 0 51589 1 no rank 2624677 0 1 561 Haloarcula sp. CBA1115 561 1 0 1592728 species species 0 1932004 1 403 Haloarcula taiwanensis 0 203135 genus 1 2 592 5 Halomicrobium 1 species 0 57705 Halomicrobium mukohataei 587 0 1073987 genus 1 2 529 12 Halorientalis 517 no rank 0 2648975 1 517 Halorientalis sp. IM1011 species 0 1932360 1 1 genus 0 146825 3 9 691 Halorhabdus 403 Halorhabdus utahensis 146826 0 species 1 1 430914 0 species Halorhabdus tiamatea 279 0 63743 1 genus 3 11 587 Natronomonas Natronomonas moolapensis 254 1 species 0 416273 1 species 0 2257 Natronomonas pharaonis 322 49 1 class 0 224756 Methanomicrobia 41 21153 5 0 570264 order 1 Methanocellales 1465 26 1439 3 Methanocellaceae family 1 0 570265 4 0 570266 genus 1 3 1436 3 Methanocella Methanocella arvoryzae 1234 1 0 1175445 species 1 0 1175444 species Methanocella conradii 199 Methanomicrobiales 14 5441 14 0 2191 1 order Methanoregulaceae 2 2101 4 0 1198451 1 family 1207 genus 395331 0 2 0 882104 species 1 896 Methanoregula formicica Methanoregula boonei 311 1 species 0 358766 475087 0 genus 1 892 1 species 0 475088 Methanosphaerula palustris 892 family 1 0 2194 6 1995 7 Methanomicrobiaceae 1748 27 Methanoculleus 0 45989 genus 1 4 522 Methanoculleus marisnigri species 2198 0 1 708 Methanoculleus bourgensis 0 83986 species 1 491 1 no rank 2619537 0 1 86622 0 species Methanoculleus sp. MAB1 491 240 230355 0 genus 1 240 Methanolacinia petrolearia 0 54120 species 1 family 88404 0 2 999 Methanocorpusculum 999 3 2 0 2192 genus 1 Methanocorpusculum labreanum 996 1 species 0 83984 332 family 196137 0 1 1 genus 2202 0 332 332 Methanospirillum hungatei species 2203 0 1 29 1 order 94695 0 Methanosarcinales 16 14206 4 family 1 0 143067 Methanosaetaceae 864 8 genus 1 0 2222 3 856 7 Methanothrix species 0 2223 1 408 Methanothrix soehngenii species 0 301375 1 441 Methanosaeta harundinacea Methanosarcinaceae 78 13326 24 0 2206 1 family 1 2321 0 genus 561 species 0 2322 1 561 Methanohalobium evestigatum genus 0 196136 1 436 species 39669 0 1 436 Methanosalsum zhilinae 835 genus 0 2225 2 1 0 2226 species Methanococcoides methylutens 399 436 Methanococcoides burtonii species 29291 0 1 genus 101191 0 1 745 745 Methanomethylovorans hollandica 0 101192 species 1 Methanohalophilus 2 754 3 2175 0 1 genus 398 Methanohalophilus halophilus species 0 2177 1 species 0 2176 1 354 Methanohalophilus mahii Methanosarcina 41 9614 13 0 2207 1 genus 2171 0 2644672 no rank 4 Methanosarcina sp. Kolksee 708 1 1434099 0 species 1 species 0 1434100 Methanosarcina sp. MTP4 538 Methanosarcina sp. WWM596 565 1 0 1434103 species 360 Methanosarcina sp. WH1 species 0 1434102 1 449 Methanosarcina thermophila 0 2210 species 1 species 418008 0 1 940 Methanosarcina horonobensis species 170861 0 1 554 Methanosarcina lacustris 1 0 38027 species Methanosarcina siciliae 711 2226 Methanosarcina barkeri species 2208 0 1 Methanosarcina vacuolata 517 1 species 0 2215 1353 Methanosarcina mazei 0 2209 species 1 652 Methanosarcina acetivorans 0 2214 species 1 2 genus 1 0 2220 Methanolobus 303 2 0 420950 species 1 301 Methanolobus psychrophilus clade 0 2283794 43 19109 183939 0 class 1 17 8420 42 Methanococci Methanococcales 8378 2 16 order 1 0 2182 1 family 2183 0 6 38 4826 Methanococcaceae 776 1 genus 155862 0 776 Methanothermococcus okinawensis species 0 155863 1 4012 4 genus 0 2184 450 Methanococcus voltae 2188 0 species 1 1 0 42879 species Methanococcus aeolicus 700 0 2187 species 1 552 Methanococcus vannielii 2310 Methanococcus maripaludis species 0 39152 1 Methanocaldococcaceae 3550 7 9 family 1 0 196117 581 1 genus 0 196119 581 Methanotorris igneus 0 2189 species 1 2962 2 Methanocaldococcus genus 1 0 196118 7 1 83171 0 species Methanocaldococcus fervens 354 species 0 1301915 1 704 Methanocaldococcus bathoardescens Methanocaldococcus jannaschii 613 1 species 0 2190 1 0 73913 species Methanocaldococcus vulcanius 731 0 67760 species 1 196 Methanocaldococcus infernus 362 1 0 2641196 no rank Methanocaldococcus sp. FS406-22 362 1 0 644281 species Methanobacteria 10689 7 26 class 1 0 183925 Methanobacteriales 10682 4 25 0 2158 order 1 431 1 family 0 2178 genus 2179 0 1 431 Methanothermus fervidus 431 1 species 0 2180 family 1 0 2159 23 10247 4 Methanobacteriaceae genus 1 0 2172 7 5482 6 Methanobrevibacter Methanobrevibacter olleyae 977 1 species 0 294671 2 2638681 0 no rank 1467 652 Methanobrevibacter sp. YE315 species 0 1609968 1 Methanobrevibacter sp. AbM4 815 1 species 0 224719 800 Methanobrevibacter ruminantium 0 83816 species 1 0 2173 species 1 1209 Methanobrevibacter smithii 1023 Methanobrevibacter millerae 0 230361 species 1 677 5 Methanothermobacter 145260 0 genus 1 5 1 species 145263 0 Methanothermobacter marburgensis 120 no rank 0 2631116 1 189 species 866790 0 1 189 Methanothermobacter sp. CaT2 145261 0 species 1 220 Methanothermobacter wolfeii 1 0 145262 species Methanothermobacter thermautotrophicus 143 Methanobacterium 12 3106 8 1 genus 0 2160 433 Methanobacterium formicicum 0 2162 species 1 1 0 59277 species Methanobacterium subterraneum 504 1 877455 0 species Methanobacterium lacus 641 0 2627676 no rank 2 754 423 Methanobacterium sp. MZ-A1 species 0 1911685 1 0 1379702 species 1 331 Methanobacterium sp. MB1 species 0 118062 1 268 Methanobacterium congolense 0 868131 species 1 494 Methanobacterium paludis 2 genus 1 0 2316 Methanosphaera 978 1 977 Methanosphaera stadtmanae species 0 2317 1 5033 22 clade 2283796 0 0 183967 class 1 20 4759 13 Thermoplasmata 1117 1234666 0 no rank 1 1117 methanogenic archaeon ISO4-H5 0 1495144 species 1 0 1235850 order 1 6 1108 2 Methanomassiliicoccales family 2517203 0 2 385 0 1291539 1 genus 2 13 385 Candidatus Methanomethylophilus 1 1291540 0 species Candidatus Methanomethylophilus alvus 372 3 0 1577788 family 1 Methanomassiliicoccaceae 721 2 459 genus 1080709 0 1 Candidatus Methanomassiliicoccus intestinalis 459 1 0 1406512 species 260 1 genus 1607807 0 1 species 0 1577791 Candidatus Methanoplasma termitum 260 18 2521 Thermoplasmatales 1 order 2301 0 12 3 family 0 46659 272 2302 0 1 genus 3 1 272 Thermoplasma 105 Thermoplasma volcanium 50339 0 species 1 1 0 2303 species Thermoplasma acidophilum 166 512 0 90142 family 3 genus 1 0 74968 3 512 1 Ferroplasma 242 Ferroplasma acidiphilum 0 74969 species 1 1 species 0 97393 Ferroplasma acidarmanus 269 211 1 Cuniculiplasmataceae 0 1747776 family 1 3 7 210 Cuniculiplasma 1747777 0 1 genus 2 Cuniculiplasma divulgatum 203 1 0 1673428 species no rank 1919231 0 1 1223 1 species 1054217 0 Thermoplasmatales archaeon BRNA1 1223 285 1 46630 0 family genus 46631 0 1 285 285 Picrophilus torridus species 82076 0 1 274 2 clade 0 1803510 2 379546 0 genus 274 120 no rank 2633939 0 1 120 Aciduliprofundum sp. MAR08-339 0 673860 species 1 Aciduliprofundum boonei 154 1 0 379547 species 7680 10 Thermococci 183968 0 class 1 40 11 7670 Thermococcales 1 order 2258 0 39 38 0 2259 1 family Thermococcaceae 13 7659 354 1 genus 83867 0 0 971279 species 1 354 Palaeococcus pacificus genus 0 2260 7 1569 2 2629106 0 no rank 635 Pyrococcus sp. NA2 475 1 species 0 342949 160 Pyrococcus sp. ST04 species 0 1183377 1 Pyrococcus horikoshii 157 1 species 0 53953 0 29292 species 1 186 Pyrococcus abyssi species 1008460 0 1 125 Pyrococcus yayanosii Pyrococcus furiosus 363 1 0 2261 species species 0 1609559 1 103 Pyrococcus kukulkanii Thermococcus 38 5723 29 0 2263 1 genus Thermococcus guaymasensis 158 1 110164 0 species Thermococcus sibiricus 277 1 0 172049 species Thermococcus paralvinellae 228 1 species 582419 0 6 no rank 0 2627626 1241 species 0 2016361 1 178 Thermococcus sp. EXT12c 107 Thermococcus sp. P6 0 122420 species 1 species 0 246969 1 276 Thermococcus sp. AM4 Thermococcus sp. 5-4 197 1 0 2008440 species Thermococcus sp. 2319x1 127 1 0 1674923 species 1042877 0 species 1 356 Thermococcus sp. 4557 1 species 0 342948 Thermococcus onnurineus 131 species 0 49899 1 291 Thermococcus profundus species 0 187878 1 142 Thermococcus gammatolerans species 0 1505907 1 237 Thermococcus eurythermalis Thermococcus radiotolerans 166 1 species 187880 0 207 Thermococcus siculi 0 72803 species 1 1 species 0 2264 Thermococcus celer 175 0 54077 species 1 209 Thermococcus barossii Thermococcus barophilus 310 1 0 55802 species species 0 163003 1 171 Thermococcus cleftensis 221 Thermococcus nautili 0 195522 species 1 Thermococcus chitonophagus 107 1 species 0 54262 Thermococcus pacificus 163 1 species 0 71998 1 species 0 71997 Thermococcus gorgonarius 152 species 311400 0 1 192 Thermococcus kodakarensis 1 0 277988 species Thermococcus thioreducens 252 269 Thermococcus litoralis species 0 2265 1 Thermococcus piezophilus 238 1 0 1712654 species 148 Thermococcus peptonophilus 0 53952 species 1 8740 52 clade 1783275 0 0 28889 phylum 39 6186 6186 2 Thermoprotei 0 183924 class 1 39 order 0 871006 3 589 Caldisphaeraceae 487 1 2 family 1 255472 0 486 1 200414 0 genus 1 species 0 200415 Caldisphaera lagunensis 486 102 1 family 871007 0 102 105850 0 genus 1 Acidilobus saccharovorans 102 1 0 242703 species 3360 10 order 2281 0 10 0 118883 1 family Sulfolobaceae 1 3360 786 0 69655 genus 1 786 Sulfolobus tokodaii species 0 111955 1 4 0 2284 1 genus Sulfolobus 3 1150 640 Sulfolobus islandicus 0 43080 species 1 264 no rank 0 2641160 1 1 0 1891280 species Sulfolobus sp. A20 264 Sulfolobus acidocaldarius 243 1 2285 0 species 269 genus 2100760 0 1 Sulfolobus solfataricus 269 1 species 0 2287 785 genus 12914 0 1 1 0 563177 species Acidianus hospitalis 785 369 2 genus 0 41980 87 Metallosphaera cuprina species 0 1006005 1 1 0 43687 species Metallosphaera sedula 282 0 114380 order 1 12 1001 1 Desulfurococcales 8 2272 0 family 842 genus 54258 0 2 82 1 160233 0 species Ignicoccus hospitalis 52 species 0 54259 1 30 Ignicoccus islandicus 195 genus 2273 0 2 Desulfurococcus mucosus 43 1 species 2275 0 Desulfurococcus amylolyticus 152 1 94694 0 species 1 genus 54253 0 63 0 54254 species 1 63 Thermosphaera aggregans 67 1 0 477695 genus 1 species 1200300 0 Thermogladius calderae 67 2 0 2279 genus 435 Staphylothermus marinus 256 1 0 2280 species 84599 0 species 1 179 Staphylothermus hellenicus 158 2307 0 family 3 1 genus 0 54247 33 33 Hyperthermus butylicus 0 54248 species 1 45 1 54251 0 genus 1 0 54252 species Pyrolobus fumarii 45 0 2308 genus 1 80 Pyrodictium delaneyi 80 1 0 1273541 species 13 order 1 0 2266 Thermoproteales 1234 3 Thermoproteaceae 774 10 7 0 2267 family 1 genus 76886 0 1 176 1 76887 0 species Caldivirga maquilingensis 176 360 genus 164450 0 2 160 Vulcanisaeta moutnovskia species 0 985052 1 1 species 0 164451 Vulcanisaeta distributa 200 186 2 0 2270 genus 0 184117 species 1 107 Thermoproteus uzoniensis Thermoproteus tenax 79 1 species 0 2271 0 2276 genus 1 42 1 species 2277 0 Pyrobaculum islandicum 42 Thermofilaceae 3 457 5 1 family 0 114378 454 2268 0 genus 4 0 1550241 species 1 107 Thermofilum uzonense Thermofilum adornatus 149 1 species 0 1365176 Thermofilum pendens 69 1 0 2269 species 1483572 0 species 1 129 Thermofilum carboxyditrophus 67 0 51967 phylum 1 498845 0 genus 1 67 Candidatus Korarchaeum cryptofilum 67 1 species 0 498846 phylum 0 651137 12 2487 no rank 0 651142 3 535 0 1825023 genus 2 225 1 0 1603555 species Candidatus Nitrosotenuis cloacae 133 Candidatus Nitrosotenuis sp. AQ6f 92 1 species 0 1846278 1 genus 1593364 0 310 1410606 0 species 1 310 Candidatus Nitrosopelagicus brevis 637 class 1643678 0 4 2 324 Candidatus Nitrosocaldales 1 order 0 1968909 3 Candidatus Nitrosocaldaceae 1 322 2 1 family 0 1968910 genus 498374 0 1 321 1 0 2045011 species Candidatus Nitrosocaldus islandicus 321 0 1033996 order 1 313 1 family 1033997 0 313 1 genus 497726 0 313 Nitrososphaera viennensis 313 1 0 1034015 species 3 1315 Nitrosopumilales 0 31932 1 order 5 0 338190 1 family 4 4 1312 Nitrosopumilaceae 0 338191 genus 2 866 1 species 0 1229909 Candidatus Nitrosopumilus sediminis 378 1580092 0 species 1 488 Candidatus Nitrosopumilus adriaticus 442 0 1993653 genus 1 Candidatus Nitrosomarinus catalina 442 1 species 0 1898749 0 0 1 name 114 20311540 Bacteria 0 2 1 superkingdom 4502 2036 phylum 1 0 1224 Proteobacteria 2207190 1254 0 1236 1 class 894 2224 979298 Gammaproteobacteria Pseudomonadales 208463 1112 129 72274 0 order 1 42 0 468 family 1 Moraxellaceae 34712 97 4641 53 Psychrobacter genus 1 0 497 11 6 no rank 0 196806 2965 436 Psychrobacter sp. P2G3 0 1699622 species 1 Psychrobacter sp. DAB_AL43B 573 1 species 1028416 0 0 1699624 species 1 431 Psychrobacter sp. P11G5 Psychrobacter sp. PRwf-1 883 1 349106 0 species 277 Psychrobacter sp. G 571800 0 species 1 1 species 0 1720344 Psychrobacter sp. AntiMn-1 365 Psychrobacter cryohalolentis 280 1 0 330922 species 511 Psychrobacter arcticus species 0 334543 1 1 0 261164 species Psychrobacter alimentarius 434 Psychrobacter urativorans 398 1 species 45610 0 Moraxella 4096 23 5 genus 1 475 0 Moraxella bovoculi 1106 1 species 0 386891 1 species 0 29433 Moraxella ovis 597 species 34062 0 1 1660 Moraxella osloensis species 0 480 1 710 Moraxella catarrhalis 469 0 genus 1 25 25878 168 Acinetobacter 1 species 0 108981 Acinetobacter schindleri 734 982 0 202950 species 1 Acinetobacter sp. ADP1 982 1 0 62977 strain 1 species 29430 0 Acinetobacter haemolyticus 757 1154 Acinetobacter radioresistens 0 40216 species 1 871 Acinetobacter oleivorans species 0 1148157 1 1 species 1324350 0 Acinetobacter equi 1135 5160 7 0 196816 no rank 1 2079596 0 species Acinetobacter sp. SWBY1 383 1 species 0 1636603 Acinetobacter sp. ACNIH1 518 1 species 0 1758189 Acinetobacter sp. ACNIH2 999 1 0 1407071 species Acinetobacter sp. TGL-Y2 1039 0 1808001 species 1 928 Acinetobacter sp. LoGeW2-3 0 1646498 species 1 832 Acinetobacter sp. TTH0-4 species 1608473 0 1 461 Acinetobacter sp. NCu2D-2 10076 5 species group 909768 0 species 0 48296 1 2934 Acinetobacter pittii 1 0 470 species Acinetobacter baumannii 3607 1 species 0 471 Acinetobacter calcoaceticus 2044 Acinetobacter nosocomialis 910 1 species 0 106654 1 0 1785128 species Acinetobacter lactucae 581 1 species 0 756892 Acinetobacter indicus 962 106648 0 species 1 974 Acinetobacter bereziniae Acinetobacter johnsonii 800 1 0 40214 species 0 487316 species 1 638 Acinetobacter soli 1 species 1789224 0 Acinetobacter larvae 508 Acinetobacter junii 959 1 0 40215 species 86 family 1 0 135621 Pseudomonadaceae 172639 1059 4479 subfamily 351 0 3 3 352 0 1 genus Azotobacter 55 4479 1 0 353 species Azotobacter chroococcum 2747 Azotobacter vinelandii 1677 1 species 0 354 Pseudomonas 5937 166318 80 0 286 1 genus 2 136846 0 species group 9769 1 species 0 74829 Pseudomonas balearica 1098 species subgroup 578833 0 1 8671 Pseudomonas stutzeri 8671 1 0 316 species 1 species 0 198620 Pseudomonas koreensis 1685 1 species 0 1788301 Pseudomonas versuta 761 1430 Pseudomonas antarctica 0 219572 species 1 1 species 0 157783 Pseudomonas cremoricolorata 1024 7813 2 136842 0 species group 0 587753 species 1 5849 Pseudomonas chlororaphis 1964 Pseudomonas fragi 0 296 species 1 1107 Pseudomonas rhizosphaerae species 216142 0 1 2263 Pseudomonas brassicacearum 0 930166 species 1 Pseudomonas alkylphenolica 1334 1 237609 0 species Pseudomonas cerasi 1296 1 1583341 0 species Pseudomonas entomophila 1009 1 species 0 312306 Pseudomonas knackmussii 1513 1 species 0 65741 Pseudomonas frederiksbergensis 2316 1 0 104087 species 1 species 0 1853130 Pseudomonas silesiensis 879 22325 9 species group 136843 0 942 Pseudomonas veronii species 0 76761 1 0 75612 species 1 1542 Pseudomonas mandelii 864 Pseudomonas poae species 0 200451 1 1 0 47879 species Pseudomonas corrugata 763 Pseudomonas fluorescens 12345 1 0 294 species 0 200450 species 1 1284 Pseudomonas trivialis 1 species 0 76758 Pseudomonas orientalis 1087 1891 Pseudomonas protegens species 0 380021 1 Pseudomonas azotoformans 1607 1 47878 0 species species group 136845 0 6 26166 1065 Pseudomonas plecoglossicida 0 70775 species 1 0 47885 species 1 1666 Pseudomonas oryzihabitans 0 303 species 1 13859 Pseudomonas putida species 0 76759 1 3147 Pseudomonas monteilii 3980 Pseudomonas fulva 0 47880 species 1 2449 Pseudomonas mosselii 78327 0 species 1 1165 Pseudomonas lurida 0 244566 species 1 1 species 0 157782 Pseudomonas parafulva 1866 no rank 196821 0 30 34732 Pseudomonas sp. HLS-6 1261 1 species 2049589 0 Pseudomonas sp. LPH1 1190 1 0 1898684 species Pseudomonas sp. SWI6 861 1 0 2083051 species 989 Pseudomonas sp. LG1D9 species 0 2083054 1 Pseudomonas sp. JY-Q 996 1 species 0 1338689 798 Pseudomonas sp. FDAARGOS_380 0 2018067 species 1 species 1931241 0 1 1214 Pseudomonas sp. S-6-2 1 0 1611770 species Pseudomonas sp. MRSN12121 1217 2069256 0 species 1 864 Pseudomonas sp. XWY-1 Pseudomonas sp. MYb193 636 1 0 1827300 species Pseudomonas sp. NC02 839 1 0 2067572 species 0 1294143 species 1 1836 Pseudomonas sp. ATCC 13867 1 species 0 2083055 Pseudomonas sp. LH1G9 1008 Pseudomonas sp. UW4 685 1 0 1207075 species Pseudomonas sp. URMO17WK12:I11 2522 1 species 1283291 0 Pseudomonas sp. TKP 852 1 species 0 1415630 Pseudomonas sp. CCOS 191 1192 1 species 0 1649877 1 species 0 1981174 Pseudomonas sp. M30-35 1416 species 0 2083052 1 877 Pseudomonas sp. SWI36 species 2083053 0 1 893 Pseudomonas sp. SWI44 1 1259844 0 species Pseudomonas sp. FGI182 875 Pseudomonas sp. Os17 1352 1 0 1500686 species species 1856685 0 1 1604 Pseudomonas sp. TCU-HL1 687 Pseudomonas sp. DR 5-09 1534110 0 species 1 1 0 1659194 species Pseudomonas sp. GR 6-02 1275 species 69328 0 1 1113 Pseudomonas sp. VLB120 1529 Pseudomonas sp. CC6-YY-74 1930532 0 species 1 0 1636610 species 1 1268 Pseudomonas sp. PONIH3 Pseudomonas sp. St29 1346 1 0 1500687 species 0 1028989 species 1 1537 Pseudomonas sp. StFLB209 15472 8 species group 0 136849 1 251701 0 species Pseudomonas syringae group genomosp. 3 1514 3078 2 251698 0 species subgroup 0 47877 species 1 1648 Pseudomonas amygdali 1 species 0 29438 Pseudomonas savastanoi 1430 694 1 2775504 0 no rank 694 Pseudomonas sp. Lz4W species 0 1206777 1 species 33069 0 1 1712 Pseudomonas viridiflava Pseudomonas avellanae 786 1 species 0 46257 1 251695 0 species subgroup 6830 Pseudomonas syringae 6830 1 317 0 species 858 Pseudomonas cichorii species 0 36746 1 Pseudomonas alcaliphila 1511 1 species 101564 0 136841 0 species group 6 21230 3465 Pseudomonas citronellolis species 0 53408 1 7020 Pseudomonas aeruginosa 0 287 species 1 1 0 53412 species Pseudomonas resinovorans 1537 species subgroup 1232139 0 1 1669 species 1149133 0 1 1669 Pseudomonas furukawaii 1 43263 0 species Pseudomonas alcaligenes 1542 Pseudomonas mendocina 5997 1 0 300 species 1715 Pseudomonas psychrotolerans 0 237610 species 1 1 genus 1849530 0 2 9 783 Oblitimonas Oblitimonas alkaliphila 774 1 0 1697053 species 247 0 91347 order 1 Enterobacterales 344652 1566 104 24474 Pectobacteriaceae 0 1903410 1 family 20 Sodalis 118 3450 5 1 genus 84565 0 0 1239307 species 1 1329 Sodalis praecaptivus 1 species 0 63612 Sodalis glossinidius 935 species 0 1929246 1 201 Sodalis endosymbiont of Henestaris halophilus 1486991 0 species 1 867 Candidatus Sodalis pierantonius 1 genus 71655 0 2 31 1216 Brenneria 1185 Brenneria goodwinii species 1109412 0 1 181 9955 Pectobacterium 1 genus 0 122277 6 species 55208 0 1 1022 Pectobacterium wasabiae 0 2042057 species 1 2340 Pectobacterium polaris Pectobacterium atrosepticum 1206 1 species 0 29471 1 species 0 1905730 Pectobacterium parmentieri 823 1 species 0 554 Pectobacterium carotovorum 4383 6 1 genus 204037 0 Dickeya 367 9749 Dickeya solani 2368 1 species 0 1089444 species 0 204042 1 2898 Dickeya zeae 1 0 1778540 species Dickeya fangzhongdai 1448 species 204039 0 1 1497 Dickeya dianthicola Dickeya dadantii 1171 1 0 204038 species 21 0 1903414 family 1 Morganellaceae 18907 25 2755 28 Morganella genus 1 0 581 2 1 0 582 species Morganella morganii 2727 508 1 637 0 genus 508 Arsenophonus symbiont of Lipoptena fortisetosa 0 634113 species 1 genus 1 0 29487 4 3831 56 Photorhabdus 744 Photorhabdus luminescens species 0 29488 1 Photorhabdus asymbiotica 1982 1 species 0 291112 1049 Photorhabdus temperata 0 574560 species 1 Proteus 29 3094 3 0 583 1 genus 1180 Proteus vulgaris species 0 585 1 Proteus mirabilis 1885 1 species 584 0 0 586 genus 1 4 4166 20 Providencia Providencia stuartii 1387 1 0 588 species 1577 Providencia alcalifaciens 0 126385 species 1 1 species 0 587 Providencia rettgeri 1182 6 1 genus 626 0 Xenorhabdus 31 4528 0 40576 species 1 1096 Xenorhabdus bovienii 1 species 351679 0 Xenorhabdus hominickii 948 1 0 40577 species Xenorhabdus poinarii 815 species 628 0 1 726 Xenorhabdus nematophila Xenorhabdus doucetiae 912 1 0 351671 species Erwiniaceae 126 32576 28 1 family 1903409 0 1245 37 Tatumella genus 1 0 82986 2 1208 Tatumella citrea 0 53336 species 1 551 0 genus 1 8 7575 248 Erwinia Erwinia amylovora 1267 1 species 552 0 1 species 0 1619313 Erwinia gerundensis 1415 1 2622719 0 no rank 940 940 Erwinia sp. Ejp617 species 0 215689 1 989 Erwinia pyrifoliae species 0 79967 1 890 Erwinia tasmaniensis 0 338565 species 1 1 182337 0 species Erwinia billingiae 1603 1 species 1922217 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 223 879 10 Wigglesworthia 51228 0 genus 1 2 0 51229 species 1 869 Wigglesworthia glossinidia Buchnera 3 4811 2 1 genus 0 32199 Buchnera aphidicola 4808 1 0 9 species 2 genus 2100764 0 2785 1 species 0 665913 Pantoea calida 1254 1531 Pantoea gaviniae species 0 665914 1 Pantoea 905 15155 11 0 53335 1 genus species 0 1076550 1 795 Pantoea rwandensis species 0 470934 1 2850 Pantoea vagans 1 0 1654067 species group 2720 2720 Pantoea agglomerans species 0 549 1 no rank 0 2630326 3 4246 Pantoea sp. At-9b 1684 1 species 0 592316 Pantoea sp. PSNIH1 894 1 species 0 1484158 1668 Pantoea sp. PSNIH2 0 1484157 species 1 1117 Pantoea stewartii species 0 66269 1 1235990 0 species 1 333 Candidatus Pantoea carbekii 0 553 species 1 1246 Pantoea ananatis 943 Pantoea alhagi 1891675 0 species 1 1566 no rank 451511 0 2 0 702 1 genus 2 44 1566 Plesiomonas 1522 Plesiomonas shigelloides 0 703 species 1 Yersiniaceae 56175 174 39 family 1 0 1903411 genus 1565532 0 1 25 Rouxiella 1 genus 613 0 16 1476 31430 Serratia 8 0 2647522 no rank 10503 1006 Serratia sp. AS13 0 768493 species 1 Serratia sp. FGI94 1471 1 species 671990 0 0 488142 species 1 1583 Serratia sp. SCBI species 0 1327989 1 1750 Serratia sp. FS14 1 104623 0 species Serratia sp. ATCC 39006 1086 1 768490 0 species Serratia sp. AS12 1006 Serratia sp. SSNIH1 1216 1 species 0 1758196 1 2033438 0 species Serratia sp. MYb239 1385 1946 Serratia ficaria 0 61651 species 1 7823 Serratia marcescens species 615 0 1 1490 Serratia rubidaea 61652 0 species 1 1130 Serratia proteamaculans species 0 28151 1 1598 Serratia liquefaciens 0 614 species 1 0 47917 species 1 2607 Serratia fonticola 1 species 0 82996 Serratia plymuthica 2857 0 629 1 genus 13 406 18479 Yersinia species 0 29484 1 3809 Yersinia frederiksenii 1 0 630 species Yersinia enterocolitica 3909 0 2653513 no rank 1 1380 species 0 1839800 1 1380 Yersinia sp. FDAARGOS_228 1 species 0 631 Yersinia intermedia 1392 449 Yersinia aldovae species 0 29483 1 1 species 0 263819 Yersinia aleksiciae 1117 species 0 29486 1 696 Yersinia ruckeri 1 29485 0 species Yersinia rohdei 1004 3 1649845 0 species group 3329 632 0 species 1 1169 Yersinia pestis Yersinia pseudotuberculosis 1287 1 0 633 species Yersinia similis 873 1 species 0 367190 species 0 28152 1 988 Yersinia kristensenii Gibbsiella 7 1055 2 1 genus 0 929812 Gibbsiella quercinecans 1048 1 0 929813 species 2 1745211 0 genus 1 Chania 922 27 1 0 1639108 species Chania multitudinisentens 895 4 0 34037 genus 1 Rahnella 4090 49 1133 Rahnella aquatilis 0 34038 species 1 2 no rank 2635087 0 2908 1 species 0 1805933 Rouxiella sp. ERMR1:05 1873 0 741091 species 1 1035 Rahnella sp. Y9602 2 family 0 1903416 864 6 864 Pragia 1 genus 82984 0 2 0 82985 species 1 858 Pragia fontium 0 543 1 family 120 2266 194387 Enterobacteriaceae 2 1168 Kluyvera 0 579 1 genus 2 1166 Kluyvera intermedia species 0 61648 1 1 genus 0 1330547 5 41 5625 Kosakonia 1 0 283686 species Kosakonia radicincitans 1433 Kosakonia oryzae 986 1 species 497725 0 1 species 0 208223 Kosakonia cowanii 1961 Kosakonia sacchari 1204 1 species 0 1158459 4993 no rank 0 191675 20 4993 84563 0 clade 20 2191 7 84564 0 clade 1 genus 0 203804 7 6 2191 Candidatus Blochmannia Candidatus Blochmannia floridanus 400 1 species 0 203907 1 species 101534 0 Candidatus Blochmannia pennsylvanicus 289 711328 0 no rank 2 811 1 0 1505597 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 569 242 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 1505596 0 1 Candidatus Blochmannia chromaiodes 284 1 species 0 251542 0 251535 species 1 401 Candidatus Blochmannia vafer 749 1 genus 0 1682492 1 species 1410383 0 Candidatus Tachikawaea gelatinosa 749 1 1906661 0 genus 337 Candidatus Gullanella endobia 337 1 0 1070130 species Candidatus Hoaglandella 181 2 2 genus 1 1906659 0 Candidatus Hoaglandella endobia 179 1 species 0 1778263 2 genus 1 0 1906660 Candidatus Mikella 157 1 1778264 0 species 1 156 Candidatus Mikella endobia 787 4 clade 146507 0 315 secondary endosymbiont of Heteropsylla cubana species 134287 0 1 Candidatus Hamiltonella 256 10 2 568987 0 genus 1 246 Candidatus Hamiltonella defensa species 0 138072 1 0 1199245 species 1 216 secondary endosymbiont of Ctenarytaina eucalypti 179 clade 0 199891 1 secondary endosymbiont of Trabutina mannipara 179 1 0 1835721 species 2 1 genus 0 1906657 Candidatus Doolittlea 2 412 410 Candidatus Doolittlea endobia 1778262 0 species 1 Pluralibacter 18 4410 3 0 1330546 1 genus 2305 Pluralibacter gergoviae species 0 61647 1 species 0 1334193 1 2087 [Enterobacter] lignolyticus 0 590 1 genus 3 21 9448 Salmonella 1 0 54736 species Salmonella bongori 1002 species 28901 0 1 8425 Salmonella enterica 0 547 1 genus 22 2008 34092 Enterobacter 9056 0 2608935 no rank 9 Enterobacter sp. 638 1523 1 species 0 399742 1092 Enterobacter sp. CRENT-193 0 2051905 species 1 0 1914861 species 1 1951 Enterobacter sp. SA187 1 species 1692238 0 Enterobacter sp. FY-07 789 species 1977566 0 1 519 Enterobacter sp. Crenshaw 0 1560339 species 1 482 Enterobacter sp. E20 1 species 1827481 0 Enterobacter sp. ODB01 1134 1 species 0 1868135 Enterobacter sp. HK169 462 Enterobacter sp. R4-368 1104 1 0 1166130 species 12 species group 0 354276 23028 Enterobacter cloacae complex 'Hoffmann cluster IV' 692 1 1812935 0 species 801 Enterobacter ludwigii 299767 0 species 1 species 0 550 1 8631 Enterobacter cloacae 2368 3 no rank 0 2757714 species 0 1915310 1 986 Enterobacter cloacae complex sp. ECNIH7 0 2027919 species 1 743 Enterobacter cloacae complex bacterium 639 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 2077137 species 1 species 0 208224 1 795 Enterobacter kobei 3118 Enterobacter asburiae species 61645 0 1 Enterobacter cancerogenus 910 1 0 69218 species Enterobacter hormaechei 5713 3300 3 0 158836 species 1 Enterobacter cloacae complex 'Hoffmann cluster III' 1498 1 subspecies 0 1812934 915 Enterobacter xiangfangensis subspecies 0 1296536 1 0 413496 genus 1 8 8748 198 Cronobacter Cronobacter condimenti 842 1 species 0 1163710 0 28141 species 1 1723 Cronobacter sakazakii species 535744 0 1 1099 Cronobacter universalis species 0 413497 1 1182 Cronobacter dublinensis species 413502 0 1 1470 Cronobacter turicensis 1 0 413503 species Cronobacter malonaticus 796 species 0 413501 1 1438 Cronobacter muytjensii 276 genus 401618 0 1 0 401619 species 1 276 Candidatus Riesia pediculicola 4 1 genus 0 83654 Leclercia 149 4131 1170 Leclercia adecarboxylata species 0 83655 1 2627398 0 no rank 2 2812 0 1920116 species 1 1177 Leclercia sp. LSNIH3 1635 Leclercia sp. LSNIH1 species 1920114 0 1 Shigella 4603 562 4 genus 1 0 620 2629414 0 no rank 1 1574 0 1813821 species 1 1574 Shigella sp. PAMC 28760 1 622 0 species Shigella dysenteriae 1426 1041 Shigella flexneri 0 623 species 1 5 36866 0 no rank 6773 1535 Enterobacteriaceae bacterium ENNIH3 species 0 1920128 1 1209 Enterobacteriaceae bacterium ENNIH1 species 0 2066051 1 1265 Enterobacteriaceae bacterium ENNIH2 0 1920109 species 1 Enterobacteriaceae bacterium strain FGI 57 1408 1 0 693444 species 1356 Plautia stali symbiont 0 891974 species 1 Raoultella 5572 83 3 genus 1 160674 0 3857 Raoultella ornithinolytica 54291 0 species 1 species 0 575 1 1632 Raoultella planticola Lelliottia 29 4964 4 0 1330545 1 genus 1 species 0 61646 Lelliottia amnigena 2754 Lelliottia nimipressuralis 1046 1 0 69220 species Lelliottia jeotgali 1135 1 0 1907578 species 430 409304 0 genus 1 species 0 168169 1 430 Candidatus Ishikawaella capsulata Escherichia 479 29190 5 1 genus 0 561 Escherichia coli 23315 1 species 0 562 species 208962 0 1 2763 Escherichia albertii 1026 Escherichia marmotae 0 1499973 species 1 species 0 564 1 1607 Escherichia fergusonii 14 1 genus 0 544 Citrobacter 799 28068 species 0 545 1 1623 Citrobacter koseri 1382 Citrobacter rodentium 67825 0 species 1 67824 0 species 1 1068 Citrobacter farmeri 18215 species group 1344959 0 7 1 species 2077149 0 Citrobacter freundii complex sp. CFNIH9 2684 1 0 2077148 species Citrobacter freundii complex sp. CFNIH4 1279 species 0 546 1 8374 Citrobacter freundii 892 Citrobacter freundii complex sp. CFNIH2 species 0 2066049 1 57706 0 species 1 1568 Citrobacter braakii species 67827 0 1 2353 Citrobacter werkmanii 1065 Citrobacter freundii complex sp. CFNIH3 species 2077147 0 1 species 0 35703 1 2913 Citrobacter amalonaticus 2644389 0 no rank 2 2068 1 species 0 1702170 Citrobacter sp. FDAARGOS_156 1167 901 Citrobacter sp. CFNIH10 0 1920110 species 1 158483 0 1 genus 2 10 4259 Cedecea 4249 Cedecea neteri 0 158822 species 1 1335483 0 genus 1 1124 Shimwellia blattae 1124 1 563 0 species Candidatus Moranella 1 351 2 0 1048757 1 genus 1048758 0 species 1 350 Candidatus Moranella endobia 859 33896 Klebsiella 0 570 1 genus 10 3039 Klebsiella michiganensis species 0 1134687 1 0 2026240 species 1 2045 Klebsiella quasivariicola 0 2608929 no rank 2 3065 1 species 0 1934254 Klebsiella sp. M5al 1596 Klebsiella sp. LTGPAF-6F 1469 1 0 1905288 species 1 0 244366 species Klebsiella variicola 4015 1 species 573 0 Klebsiella pneumoniae 9889 Klebsiella oxytoca 6029 1 571 0 species Klebsiella aerogenes 2399 1 species 0 548 Klebsiella quasipneumoniae 2556 1 0 1463165 species Hafniaceae 51 14137 14 1 family 0 1903412 568 0 genus 1 3 3043 31 Hafnia 2019 Hafnia alvei species 0 569 1 1 no rank 2621980 0 993 993 Hafnia sp. CBA7124 1848580 0 species 1 709 10386 Edwardsiella 1 genus 0 635 8 0 2676541 no rank 2 2694 1 species 0 1578828 Edwardsiella sp. EA181011 1269 1425 Edwardsiella sp. LADL05-105 0 1650654 species 1 Edwardsiella piscicida 1186 1 species 1263550 0 Edwardsiella anguillarum 1438 1 species 1821960 0 Edwardsiella tarda 1928 1 636 0 species 1027 Edwardsiella ictaluri species 0 67780 1 1 0 93378 species Edwardsiella hoshinae 1404 1 genus 0 82982 2 65 657 Obesumbacterium 592 Obesumbacterium proteus species 0 82983 1 44 order 1 0 135623 Vibrionales 46657 43 43 0 641 family 1 Vibrionaceae 46614 435 533 35842 Vibrio 0 662 1 genus 30 species group 0 1891919 1 571 Vibrio tubiashii 571 1 0 29498 species 0 676 species 1 1582 Vibrio fluvialis Vibrio coralliilyticus 2494 1 0 190893 species 1 0 28173 species Vibrio nigripulchritudo 902 2169 Vibrio cholerae species 666 0 1 1 species 0 2025808 Vibrio qinghaiensis 373 1 0 553239 species Vibrio breoganii 888 745 Vibrio tapetis 0 52443 species 1 1 672 0 species Vibrio vulnificus 2479 1 species 0 1534743 Vibrio hyugaensis 411 694 Vibrio tasmaniensis 212663 0 species 1 1 species 0 1435069 Vibrio tritonius 806 13624 species group 0 717610 10 species 0 190895 1 631 Vibrio rotiferianus 2162 Vibrio parahaemolyticus 670 0 species 1 2181 Vibrio alginolyticus 0 663 species 1 2200 Vibrio natriegens species 691 0 1 1312 0 2315253 species subgroup 2 0 50719 species 1 921 Vibrio diabolicus Vibrio antiquarius 391 1 species 0 150340 Vibrio harveyi 1619 1 species 669 0 Vibrio jasicida 692 1 0 766224 species 1 species 0 696485 Vibrio owensii 964 1 680 0 species Vibrio campbellii 1863 2095 2614977 0 no rank 2 952 Vibrio sp. 2521-89 species 0 2014742 1 0 1116375 species 1 1143 Vibrio sp. EJY3 Vibrio furnissii 1121 1 species 0 29494 1 species 674 0 Vibrio mimicus 1808 1 species 0 45658 Vibrio scophthalmi 511 892 Vibrio anguillarum species 55601 0 1 1 0 687 species Vibrio gazogenes 1144 Paraphotobacterium 3 1263 2 1 genus 0 2042066 Paraphotobacterium marinum 1260 1 species 1755811 0 3459 12 Aliivibrio genus 1 0 511678 4 1 species 40269 0 Aliivibrio salmonicida 797 602 Aliivibrio wodanis species 0 80852 1 Aliivibrio fischeri 2048 1 668 0 species 2 0 246861 genus 1 Grimontia 997 15 1 673 0 species Grimontia hollisae 982 genus 1 0 657 4 4618 27 Photobacterium 1 species 38293 0 Photobacterium damselae 1834 1596 Photobacterium gaetbulicola 0 1295392 species 1 74109 0 species 1 1161 Photobacterium profundum 23 12848 Legionellales 1 order 118969 0 20 5 0 118968 1 family Coxiellaceae 11 1380 1099 1 Coxiella genus 1 0 776 3 1 0 777 species Coxiella burnetii 794 2676648 0 no rank 1 304 species 0 325775 1 304 Coxiella endosymbiont of Amblyomma americanum 134284 0 no rank 1 270 270 Coxiella-like endosymbiont 0 1592897 species 1 11445 15 Legionellaceae 0 444 family 1 14 465 0 genus 1 400 451 0 species 1 400 Tatlockia micdadei 25 11030 Legionella 1 genus 0 445 12 1 species 0 2005262 Legionella endosymbiont of Polyplax serrata 608 species 0 452 1 377 Legionella spiritensis Legionella sainthelensi 1216 1 species 0 28087 0 29423 species 1 515 Legionella oakridgensis 601 Legionella waltersii species 66969 0 1 459 Legionella clemsonensis 1867846 0 species 1 1 0 450 species Legionella longbeachae 858 Legionella fallonii 470 1 0 96230 species 1 446 0 species Legionella pneumophila 4824 0 449 species 1 650 Legionella hackeliae 0 45067 species 1 427 Legionella lansingensis Immundisolibacterales 1318 23 4 order 1 1934945 0 3 0 1934946 1 family Immundisolibacteraceae 39 1295 2 0 1934947 genus 1 Immundisolibacter 1256 32 Immundisolibacter cernigliae 1224 1 1810504 0 species Nevskiales 1016 4 4 order 1 0 1775403 Sinobacteraceae 12 1 0 568386 family 2689614 0 family 2 1000 469322 0 1 genus 2 17 1000 Steroidobacter 0 465721 species 1 983 Steroidobacter denitrificans 5 0 1240482 order 1622 1 family 1240483 0 5 12 1622 Orbaceae 0 1193503 1 genus 2 3 1034 Gilliamella 1031 Gilliamella apicola 0 1196095 species 1 576 4 Frischella genus 1 0 1335631 2 1 0 1267021 species Frischella perrara 572 Pasteurellales 39 26447 32 0 135625 1 order 0 712 family 1 31 26408 2045 Pasteurellaceae Mannheimia 3143 12 4 75984 0 genus 1 1 2645054 0 no rank 858 1 0 1432056 species Mannheimia sp. USDA-ARS-USMARC-1261 858 1 species 0 75985 Mannheimia haemolytica 1424 1 0 85404 species Mannheimia varigena 849 Glaesserella 3 1558 2 0 2094023 1 genus 1555 Glaesserella parasuis 738 0 species 1 2675 0 476528 genus 1 2675 Bibersteinia trehalosi 0 47735 species 1 713 0 1 genus 5 52 3789 Actinobacillus species 715 0 1 990 Actinobacillus pleuropneumoniae 1 species 67854 0 Actinobacillus succinogenes 938 Actinobacillus equuli 932 1 718 0 species 877 Actinobacillus suis 716 0 species 1 2509 12 Pasteurella genus 1 745 0 3 774 Pasteurella dagmatis species 0 754 1 species 0 747 1 1723 Pasteurella multocida Histophilus 1 1254 2 1 genus 214906 0 0 731 species 1 1253 Histophilus somni Gallibacterium 1489 8 2 genus 1 0 155493 Gallibacterium anatis 1481 1 750 0 species genus 1 0 724 6 4759 25 Haemophilus 585 Haemophilus pittmaniae species 249188 0 1 Haemophilus parainfluenzae 663 1 species 0 729 1 no rank 2609962 0 584 584 Haemophilus sp. oral taxon 036 0 712310 species 1 Haemophilus influenzae 2235 1 species 0 727 1 0 730 species [Haemophilus] ducreyi 667 1 genus 416916 0 3 10 2313 Aggregatibacter 1 species 732 0 Aggregatibacter aphrophilus 1042 714 0 species 1 1261 Aggregatibacter actinomycetemcomitans 874 14 Basfia 697331 0 genus 1 2 species 0 157673 1 860 [Mannheimia] succiniciproducens 259 47041 Aeromonadales 1 order 0 135624 29 Aeromonadaceae 290 46782 28 1 family 0 84642 3 genus 1 0 225143 Oceanisphaera 2656 18 Oceanisphaera sp. AMac2203 354 1 species 0 1903694 1 0 1416627 species Oceanisphaera profunda 2284 0 129577 genus 1 2 1882 13 Oceanimonas 0 2636315 no rank 1 1869 1 0 511062 species Oceanimonas sp. GK1 1869 1880 11 Tolumonas 43947 0 genus 1 2 Tolumonas auensis 1869 1 0 43948 species 642 0 genus 1 18 37118 2842 Aeromonas 1 species 0 196024 Aeromonas dhakensis 1588 species 0 651 1 1397 Aeromonas media 8 no rank 0 257493 10564 Aeromonas sp. ASNIH4 1793 1 species 0 1636609 1489 Aeromonas sp. CU5 0 2033033 species 1 1 species 0 1636608 Aeromonas sp. ASNIH3 1610 1 0 2033032 species Aeromonas sp. CA23 1671 Aeromonas sp. ASNIH2 927 1 species 0 1636607 1083 Aeromonas sp. ASNIH5 1758179 0 species 1 1060 Aeromonas sp. ASNIH7 0 1920107 species 1 1 0 1636606 species Aeromonas sp. ASNIH1 931 Aeromonas schubertii 1496 1 0 652 species Aeromonas hydrophila 7884 1 species 0 644 1 species 0 948519 Aeromonas rivipollensis 1797 1 0 645 species Aeromonas salmonicida 2985 Aeromonas veronii 3378 1 0 654 species 934 Aeromonas caviae 648 0 species 1 1 558964 0 species Aeromonas aquatica 2253 2 347533 0 1 genus Zobellella 13 2956 0 347534 species 1 2943 Zobellella denitrificans 63 477 Cardiobacteriales 1 order 0 135615 3 2 family 868 0 414 2 0 869 1 genus Dichelobacter 1 414 species 870 0 1 413 Dichelobacter nodosus Thiotrichales 24108 3 33 72273 0 order 1 family 1 135617 0 3 1342 3 Thiotrichaceae 912 genus 1021 0 1 species 0 288004 1 912 Beggiatoa leptomitoformis 0 40751 genus 1 427 1 40754 0 species Thioploca ingrica 427 family 1 0 34064 15 16708 24 Francisellaceae 0 1869285 1 genus 2 2 996 Allofrancisella Allofrancisella guangzhouensis 994 1 594679 0 species genus 1 0 262 12 15688 163 Francisella Francisella persica 841 1 species 0 954 1 0 573570 species Francisella sp. TX077310 1025 263 0 species 1 2636 Francisella tularensis 903 Francisella sp. TX077308 species 0 573569 1 3378 Francisella philomiragia species 0 28110 1 2 2610885 0 no rank 2088 1448 Francisella sp. FSC1006 species 0 1547445 1 1 0 475375 species Francisella sp. MA067296 640 1 1542390 0 species Francisella sp. CA97-1460 1403 747 Francisella halioticida species 0 549298 1 species 657445 0 1 1775 Francisella noatunensis 729 Francisella hispaniensis 0 622488 species 1 14 1 family 0 135616 Piscirickettsiaceae 32 6055 1514 1 0 1237 genus 1 species 0 1238 Piscirickettsia salmonis 1514 0 933 genus 1 3 1057 3 Thiomicrospira 492 Thiomicrospira aerophila 0 92245 species 1 1 species 0 147268 Thiomicrospira cyclica 562 2 0 28884 genus 1 Hydrogenovibrio 631 37 species 0 39765 1 594 Hydrogenovibrio crunogenus 980 12 Methylophaga 0 40222 genus 1 3 Methylophaga nitratireducenticrescens 591 1 species 754476 0 0 754477 species 1 377 Methylophaga frappieri 4 0 34067 1 genus Cycloclasticus 7 1841 Cycloclasticus zancles 645 1 1329899 0 species 1189 2 0 2621467 no rank 519 Cycloclasticus sp. P1 385025 0 species 1 Cycloclasticus sp. PY97N 670 1 species 0 728003 384 75195 Alteromonadales 0 135622 1 order 105 family 1 0 267889 9 5065 6 Colwelliaceae 9 575 Thalassotalea 0 1518149 1 genus 2 566 Thalassotalea crassostreae species 0 1763536 1 0 28228 genus 1 6 4484 30 Colwellia 3 0 196834 no rank 2928 1053 Colwellia sp. PAMC 21821 species 1816219 0 1 1 58049 0 species Colwellia sp. MT41 1029 846 Colwellia sp. PAMC 20917 species 0 1816218 1 Colwellia beringensis 611 1 species 1967665 0 species 28229 0 1 915 Colwellia psychrerythraea 25 1 family 0 267890 Shewanellaceae 273 22161 230 21888 Shewanella 0 22 1 genus 24 721 Shewanella marisflavi species 0 260364 1 1 species 0 225848 Shewanella psychrophila 1679 2172 Shewanella baltica species 62322 0 1 species 0 56812 1 690 Shewanella frigidimarina 1814 Shewanella amazonensis 0 60478 species 1 species 0 192073 1 581 Shewanella denitrificans 0 271098 species 1 749 Shewanella halifaxensis 0 70864 species 1 917 Shewanella pealeana 1028 Shewanella japonica species 93973 0 1 910 Shewanella woodyi 0 60961 species 1 898 Shewanella sediminis species 0 271097 1 Shewanella loihica 1984 1 0 359303 species 196818 0 no rank 6 3880 1 species 0 94122 Shewanella sp. ANA-3 750 704 Shewanella sp. MR-7 species 60481 0 1 776 Shewanella sp. MR-4 0 60480 species 1 1 0 351745 species Shewanella sp. W3-18-1 793 1 0 2029986 species Shewanella sp. WE21 408 449 Shewanella sp. Pdp11 species 2059264 0 1 1 0 24 species Shewanella putrefaciens 990 521 Shewanella bicestrii 0 2018305 species 1 1 species 0 404011 Shewanella piezotolerans 907 species 0 60217 1 662 Shewanella violacea 0 70863 species 1 555 Shewanella oneidensis 3 760 Moritellaceae 1 family 0 267891 3 0 58050 genus 1 2 757 21 Moritella Moritella viscosa 736 1 0 80854 species 23829 124 Alteromonadaceae 0 72275 family 1 29 1 2002 Glaciecola 1 genus 0 89404 3 1 species 0 300231 Glaciecola nitratireducens 1431 1 0 2618684 no rank 570 570 Glaciecola sp. 4H-3-7+YE-5 0 983545 species 1 10323 84 Marinobacter genus 1 0 2742 10 1572 Marinobacter similis species 0 1420916 1 Marinobacter adhaerens 1210 1 0 1033846 species 497 Marinobacter psychrophilus species 0 330734 1 1 0 2743 species Marinobacter hydrocarbonoclasticus 1974 1192 Marinobacter salinus species 1874317 0 1 2489 0 83889 no rank 3 Marinobacter sp. LQ44 1089 1 0 1749259 species Marinobacter sp. CP1 840 1 species 0 1671721 0 490759 species 1 560 Marinobacter sp. BSs20148 Marinobacter salarius 1305 1 1420917 0 species 1635 25 Lacimicrobium genus 1 0 1751872 2 Lacimicrobium alkaliphilum 1610 1 species 1526571 0 10 0 226 genus 1 Alteromonas 8276 141 875 Alteromonas addita species 0 287094 1 species 28108 0 1 2086 Alteromonas macleodii Alteromonas naphthalenivorans 475 1 species 0 715451 2145 no rank 2614992 0 3 species 0 1777491 1 598 Alteromonas sp. Mac1 Alteromonas sp. RW2A1 983 1 0 1917158 species 564 Alteromonas sp. MB-3u-76 species 0 2058133 1 Alteromonas australica 321 1 0 589873 species 233316 0 species 1 1097 Alteromonas stellipolaris Alteromonas mediterranea 1136 1 species 314275 0 1 0 1621534 genus 527 527 Paraglaciecola psychrophila species 326544 0 1 Agarivorans 8 942 2 261825 0 1 genus 934 Agarivorans gilvus species 680279 0 1 25 0 267888 1 family Pseudoalteromonadaceae 30 16522 0 53246 genus 1 24 16492 382 Pseudoalteromonas 562 Pseudoalteromonas arctica 0 394751 species 1 0 267375 species 1 571 Pseudoalteromonas marina Pseudoalteromonas luteoviolacea 686 1 0 43657 species 1 0 166935 species Pseudoalteromonas translucida 502 Pseudoalteromonas issachenkonii 584 1 species 0 152297 Pseudoalteromonas nigrifaciens 704 1 species 0 28109 Pseudoalteromonas atlantica 633 1 species 0 288 1184 Pseudoalteromonas spongiae 298657 0 species 1 586 Pseudoalteromonas tetraodonis species 0 43659 1 Pseudoalteromonas tunicata 1079 1 0 314281 species species 0 28107 1 450 Pseudoalteromonas espejiana Pseudoalteromonas piratica 1200 1 1348114 0 species 908 Pseudoalteromonas rubra 43658 0 species 1 1 species 0 161398 Pseudoalteromonas phenolica 500 653 Pseudoalteromonas piscicida 43662 0 species 1 5 no rank 0 194690 3840 Pseudoalteromonas sp. Bsw20308 735 1 0 283699 species Pseudoalteromonas sp. 13-15 688 1 species 0 1761891 species 0 234831 1 533 Pseudoalteromonas sp. SM9913 species 0 1720343 1 1235 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 species 0 1514074 Pseudoalteromonas sp. NC201 649 0 247523 species 1 545 Pseudoalteromonas aliena species 228 0 1 607 Pseudoalteromonas haloplanktis species 0 176102 1 316 Pseudoalteromonas agarivorans 4 family 1 0 267894 Psychromonadaceae 2116 3 Psychromonas 2113 18 3 0 67572 genus 1 0 357794 species 1 1243 Psychromonas ingrahamii 1 2614957 0 no rank 852 0 314282 species 1 852 Psychromonas sp. CNPT3 267892 0 family 1 3 1736 8 Ferrimonadaceae 16 1728 Ferrimonas 1 genus 44011 0 2 0 44012 species 1 1712 Ferrimonas balearica family 1 0 267893 6 2622 18 Idiomarinaceae Idiomarina 2604 31 5 0 135575 genus 1 no rank 0 2614829 2 1209 1 species 2055892 0 Idiomarina sp. X4 632 Idiomarina sp. OT37-5b 577 1 0 2100422 species Idiomarina piscisalsi 950 1 species 0 1096243 1 0 135577 species Idiomarina loihiensis 414 0 1706369 order 1 30 14458 66 Cellvibrionales family 1 0 1706375 7 2411 31 Spongiibacteraceae 4 514 Spongiibacter 1 genus 0 630749 2 510 1 no rank 0 2631504 1 species 0 1620392 Spongiibacter sp. IMCC21906 510 2 0 1434050 genus 1 Zhongshania 639 4 1 0 1470434 species Zhongshania aliphaticivorans 635 1 genus 0 1084558 2 12 1227 Oceanicoccus 0 716816 species 1 1215 Oceanicoccus sagamiensis 65 3414 Microbulbiferaceae 0 1706373 1 family 5 13 3349 Microbulbifer 1 genus 0 48073 4 1 species 0 252514 Microbulbifer thermotolerans 987 1 species 0 1769779 Microbulbifer aggregans 904 species 260552 0 1 1445 Microbulbifer agarilyticus 24 1822 Halieaceae 1 family 0 1706372 4 3 1 genus 0 1217416 Halioglobus 23 1798 species 0 930806 1 1100 Halioglobus pacificus 930805 0 species 1 675 Halioglobus japonicus 13 0 1706371 family 1 Cellvibrionaceae 6745 168 2 1 genus 0 2036021 Agarilytica 2 783 781 Agarilytica rhodophyticola species 0 1737490 1 2 0 316625 genus 1 Saccharophagus 636 1 1 0 86304 species Saccharophagus degradans 635 4 1 genus 0 10 Cellvibrio 80 3438 1 0 155077 species Cellvibrio japonicus 1016 2342 2 no rank 2624793 0 1 0 1945512 species Cellvibrio sp. PSBB023 1516 826 Cellvibrio sp. PSBB006 0 1987723 species 1 1 genus 0 2425 2 8 555 Teredinibacter 2426 0 species 1 547 Teredinibacter turnerae 1 genus 0 447467 2 8 1165 Simiduia Simiduia agarivorans 1157 1 0 447471 species 7253 no rank 118884 0 12 3 32036 0 clade 1345 524 Bathymodiolus septemdierum thioautotrophic gill symbiont 0 113267 species 1 1 0 410330 species Calyptogena okutanii thioautotrophic gill symbiont 432 389 1 1541743 0 genus Candidatus Ruthia magnifica 389 1 species 0 386487 2 0 1608298 genus 1 Thiolapillus 1230 13 Thiolapillus brandeum 1217 1 0 1076588 species 876 5 Candidatus Thioglobus genus 1 0 655184 3 Candidatus Thioglobus autotrophicus 426 1 0 1705394 species Candidatus Thioglobus singularis 445 1 0 1427364 species 1 0 1524249 genus 1448 1448 Pseudohongiella spirulinae species 0 1249552 1 979 clade 198346 0 1 979 Candidatus Baumannia cicadellinicola 0 186490 species 1 1375 8 Sedimenticola genus 1 0 349742 2 species 0 1543721 1 1367 Sedimenticola thiotaurini 6 1692040 0 order 1 Acidiferrobacterales 3294 67 family 1 0 1692041 5 3227 48 Acidiferrobacteraceae 1744881 0 genus 1 2 1572 28 Sulfuricaulis 1544 Sulfuricaulis limicola species 0 1620215 1 Sulfurifustis 1607 14 2 0 1692042 genus 1 0 1675686 species 1 1593 Sulfurifustis variabilis 52 0 135613 1 order Chromatiales 435 33990 18 1 family 1046 0 Chromatiaceae 157 13242 0 1980513 genus 1 2 373 42 Candidatus Nitrosoglobus 331 Candidatus Nitrosoglobus terrae species 0 1630141 1 3013 18 Thiodictyon genus 1 0 53392 2 1 species 0 1166950 Candidatus Thiodictyon syntrophicum 2995 Allochromatium 1705 8 2 genus 1 0 85072 1 0 1049 species Allochromatium vinosum 1697 1088 no rank 82569 0 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 1088 1 0 1978339 species 2 1 genus 0 13724 Thiocystis 24 1840 1816 Thiocystis violascens species 0 73141 1 47 2277 Nitrosococcus 0 1227 1 genus 4 Nitrosococcus watsonii 920 1 473531 0 species 1 species 0 1229 Nitrosococcus oceani 933 Nitrosococcus halophilus 377 1 0 133539 species 2 0 85076 genus 1 Marichromatium 1574 30 1 0 37487 species Marichromatium purpuratum 1544 2 1 genus 0 156885 Thioflavicoccus 16 1215 Thioflavicoccus mobilis 1199 1 0 80679 species 1760 2 no rank 0 451214 2 1273155 0 genus 1 Thiohalobacter 1760 31 1729 Thiohalobacter thiocyanaticus species 0 585455 1 Granulosicoccaceae 1628 2 3 family 1 0 449719 0 437504 genus 1 2 1626 6 Granulosicoccus 1620 Granulosicoccus antarcticus 0 437505 species 1 13153 194 Ectothiorhodospiraceae family 1 0 72276 18 Ectothiorhodospira 17 1665 2 1 genus 1051 0 1648 no rank 0 2684909 1 1 species 0 1442136 Ectothiorhodospira sp. BSL-9 1648 3 1335745 0 1 genus Spiribacter 8 1328 870 Spiribacter curvatus species 0 1335757 1 1 0 1335746 species Spiribacter salinus 450 2 1 genus 0 1765964 Acidihalobacter 9 788 0 160660 species 1 779 Acidihalobacter prosperus 0 85108 1 genus 2 12 1084 Halorhodospira Halorhodospira halophila 1072 1 species 1053 0 6 genus 1 0 106633 Thioalkalivibrio 6052 93 0 106634 species 1 1347 Thioalkalivibrio versutus 988 0 2621013 no rank 1 988 Thioalkalivibrio sp. K90mix species 396595 0 1 Thioalkalivibrio nitratireducens 1008 1 0 186931 species 1 species 0 1033854 Thioalkalivibrio sulfidiphilus 1833 1 0 108010 species Thioalkalivibrio paradoxus 783 2 0 133193 genus 1 Alkalilimnicola 2042 18 2024 Alkalilimnicola ehrlichii 0 351052 species 1 1231 24 Wenzhouxiangellaceae 0 1676141 family 1 3 genus 1 1676142 0 2 1207 23 Wenzhouxiangella 1 1579979 0 species Wenzhouxiangella marina 1184 0 1738654 family 1 3 573 6 Woeseiaceae 2 0 1738655 genus 1 Woeseia 567 10 557 Woeseia oceani 0 1548547 species 1 4 0 255526 family 1 Halothiobacillaceae 1968 16 Halothiobacillus 19 1952 3 1 genus 0 109262 914 1 0 2636392 no rank species 0 1860122 1 914 Halothiobacillus sp. LS2 Halothiobacillus neapolitanus 1019 1 species 0 927 70 order 1 0 135619 Oceanospirillales 46224 395 6 0 1920240 family 1 Kangiellaceae 2335 12 genus 1 0 261963 5 2323 56 Kangiella 0 261964 species 1 415 Kangiella koreensis 757 Kangiella sediminilitoris 0 1144748 species 1 0 1561924 species 1 722 Kangiella profundi 373 Kangiella geojedonensis 0 914150 species 1 family 1 0 224379 3 1246 10 Hahellaceae 2 genus 1 158481 0 Hahella 1236 12 1224 Hahella chejuensis 0 158327 species 1 24891 342 Halomonadaceae 0 28256 family 1 31 19 959 Chromohalobacter 42054 0 1 genus 2 species 158080 0 1 940 Chromohalobacter salexigens 1565 14 Cobetia 204286 0 genus 1 2 Cobetia marina 1551 1 species 0 28258 2 genus 1 0 404432 Salinicola 1371 20 1 0 1771309 species Salinicola tamaricis 1351 4 no rank 0 114403 620 Candidatus Evansia 2 332 2 1495768 0 1 genus 0 1495769 species 1 330 Candidatus Evansia muelleri 1 genus 114185 0 36 1 species 0 114186 Candidatus Carsonella ruddii 36 0 235572 genus 1 252 1 species 0 91844 Candidatus Portiera aleyrodidarum 252 2 1 genus 376488 0 Halotalea 27 1245 Halotalea alkalilenta 1218 1 species 0 376489 0 504090 genus 1 3 2666 21 Kushneria species 0 157779 1 1313 Kushneria marisflavi 1332 Kushneria konosiri species 0 698828 1 485 16123 Halomonas 0 2745 1 genus 15 1 0 1178482 species Halomonas huangheensis 751 Halomonas chromatireducens 1188 1 species 0 507626 448 Halomonas campaniensis 0 213554 species 1 7647 8 2609666 0 no rank species 0 1962264 1 941 Halomonas sp. 'Soap Lake #7' Halomonas sp. KO116 617 1 0 1504981 species Halomonas sp. GT 527 1 0 1971364 species 1 species 0 1610576 Halomonas sp. R57-5 733 species 0 1883416 1 1592 Halomonas sp. 1513 species 0 1949203 1 941 Halomonas sp. 'Soap Lake #6' 1 0 2136172 species Halomonas sp. SF2003 1790 1 species 0 1118153 Halomonas sp. GFAJ-1 506 1 species 0 1897729 Halomonas aestuarii 1567 Halomonas beimenensis 2411 1 0 475662 species Halomonas hydrothermalis 1626 1 species 0 115561 Saccharospirillaceae 1929 11 5 0 255527 family 1 Gynuella 1222 3 2 0 1445504 genus 1 species 0 1445505 1 1219 Gynuella sunshinyii 8 696 Reinekea 1 genus 230494 0 2 species 0 1336806 1 688 Reinekea forsetii Oceanospirillaceae 212 7770 12 1 family 0 135620 1 genus 0 28253 4 3 2513 Marinomonas 1 species 936476 0 Marinomonas posidonica 1028 Marinomonas mediterranea 742 1 species 0 119864 740 1 196814 0 no rank species 0 400668 1 740 Marinomonas sp. MWYL1 1 188907 0 genus 912 912 Oleispira antarctica species 0 188908 1 genus 1 1537406 0 2 744 16 Bacterioplanes Bacterioplanes sanyensis 728 1 0 1249553 species 410 2473 Marinobacterium 48075 0 1 genus 2 2063 Marinobacterium aestuarii 0 1821621 species 1 2 0 187492 genus 1 Thalassolituus 916 3 1 187493 0 species Thalassolituus oleivorans 913 Oleiphilaceae 1002 2 3 family 1 0 191033 50 1000 Oleiphilus 141450 0 1 genus 2 0 141451 species 1 950 Oleiphilus messinensis 9 0 224372 family 1 Alcanivoracaceae 6656 47 0 59753 genus 1 6 5529 93 Alcanivorax Alcanivorax borkumensis 657 1 0 59754 species 732 1 2638842 0 no rank 732 Alcanivorax sp. NBRC 101098 0 1113728 species 1 0 1306787 species 1 1565 Alcanivorax pacificus 1 0 1094342 species Alcanivorax xenomutans 1229 285091 0 species 1 1253 Alcanivorax dieselolei Ketobacter 1080 42 2 genus 1 0 2025617 Ketobacter alkanivorans 1038 1 species 0 1917421 54 0 135614 1 order Xanthomonadales 843 71925 Rhodanobacteraceae 161 12874 14 1 family 0 1775411 2233801 0 genus 1 1004 Xanthomonadales bacterium D13 1004 1 2021234 0 species Frateuria 12 1155 2 70411 0 1 genus 0 81475 species 1 1143 Frateuria aurantia 1735 29 Rhodanobacter genus 1 0 75309 2 0 666685 species 1 1706 Rhodanobacter denitrificans 2 0 242605 1 genus Luteibacter 11 1508 1 0 242606 species Luteibacter rhizovicinus 1497 20 1963 Dokdonella 1 genus 323413 0 2 323415 0 species 1 1943 Dokdonella koreensis 4 0 231454 genus 1 Dyella 5348 128 1 species 0 231455 Dyella japonica 1725 1608 Dyella jiangningensis species 1379159 0 1 445710 0 species 1 1887 Dyella thiooxydans 39 family 1 32033 0 Xanthomonadaceae 58208 729 0 338 1 genus 17 1407 23236 Xanthomonas 1 0 56458 species Xanthomonas sacchari 1666 species 0 347 1 1832 Xanthomonas oryzae 3844 Xanthomonas campestris species 339 0 1 1913 Xanthomonas translucens 0 343 species 1 767 Xanthomonas alfalfae species 0 366650 1 Xanthomonas phaseoli 1021 1 1985254 0 species 1 0 56460 species Xanthomonas vesicatoria 1119 species group 0 643453 2 3796 Xanthomonas citri 2735 1 0 346 species 1061 Xanthomonas fuscans 0 366648 species 1 1 species 0 456327 Xanthomonas euvesicatoria 800 1 0 29447 species Xanthomonas albilineans 768 species 0 442694 1 1116 Xanthomonas perforans 0 56459 species 1 635 Xanthomonas vasicola Xanthomonas fragariae 588 1 species 48664 0 1231 Xanthomonas hortorum 0 56454 species 1 species 0 53413 1 733 Xanthomonas axonopodis Stenotrophomonas 544 20896 9 1 genus 0 40323 0 83617 species 1 1188 Stenotrophomonas nitritireducens 4 no rank 0 196198 5731 1462 Stenotrophomonas sp. LM091 0 1904944 species 1 1 species 1827305 0 Stenotrophomonas sp. MYb57 1878 species 0 1793721 1 1145 Stenotrophomonas sp. KCTC 12332 0 2005046 species 1 1246 Stenotrophomonas sp. WZN-1 Stenotrophomonas acidaminiphila 2545 1 species 0 128780 1 216778 0 species Stenotrophomonas rhizophila 1230 0 995085 species group 1 9658 species 0 40324 1 9658 Stenotrophomonas maltophilia Pseudoxanthomonas 98 4193 3 1 genus 83618 0 0 415229 species 1 1204 Pseudoxanthomonas spadix Pseudoxanthomonas suwonensis 2891 1 species 0 314722 Xylella 4 917 2 0 2370 1 genus 913 Xylella fastidiosa 0 2371 species 1 2 genus 1 83614 0 Luteimonas 1212 5 1 0 2006110 species Luteimonas sp. 100111 1207 Lysobacter 7025 95 5 0 68 genus 1 1901 Lysobacter enzymogenes species 0 69 1 1763 Lysobacter capsici 0 435897 species 1 1786 Lysobacter antibioticus species 84531 0 1 1480 Lysobacter gummosus species 0 262324 1 1980 0 33811 no rank 2 865 gamma proteobacterium HdN1 0 83406 species 1 0 1248727 species 1 1115 endosymbiont of unidentified scaly snail isolate Monju Methylococcales 8106 43 12 0 135618 order 1 Methylococcaceae 68 8063 11 1 family 0 403 969 10 Methylovulum genus 1 0 762296 2 1 species 0 1704499 Methylovulum psychrotolerans 959 51 4945 Methylomonas 1 genus 0 416 5 844 Methylomonas denitrificans species 0 1538553 1 1627 2608980 0 no rank 1 Methylomonas sp. DH-1 1627 1 0 1727196 species Methylomonas methanica 707 1 0 421 species 1 0 702114 species Methylomonas koyamae 1716 1 genus 0 39773 888 888 Methylomicrobium alcaliphilum 0 271065 species 1 2 1 genus 0 413 Methylococcus 6 1193 Methylococcus capsulatus 1187 1 species 0 414 class 1 0 580370 6 2195 3 Zetaproteobacteria Mariprofundales 2192 9 5 580371 0 order 1 1 family 580372 0 4 7 2183 Mariprofundaceae genus 1 377315 0 3 2176 2 Mariprofundus 1 0 1921087 species Mariprofundus ferrinatatus 990 1 0 1921086 species Mariprofundus aestuarium 1184 11 class 1 0 1553900 Oligoflexia 6042 13 16 2046 Bacteriovoracales 1 order 0 2024979 5 4 1053 Bacteriovoracaceae 1 family 263369 0 2 1 146784 0 genus 1049 1 0 960 species Bacteriovorax stolpii 1049 977 2 1652132 0 family 2 977 Halobacteriovorax 0 1652133 1 genus 2 1 0 97084 species Halobacteriovorax marinus 975 Bdellovibrionales 3983 33 5 213481 0 order 1 4 family 1 0 213483 Bdellovibrionaceae 3950 19 3 genus 1 958 0 Bdellovibrio 3931 14 3404 Bdellovibrio bacteriovorus 0 959 species 1 513 Bdellovibrio exovorus species 453816 0 1 Acidithiobacillia 1 2844 7 0 1807140 1 class 2843 43 Acidithiobacillales order 1 0 225057 6 5 0 225058 family 1 Acidithiobacillaceae 2800 15 27 2785 Acidithiobacillus 119977 0 1 genus 4 1 species 0 160808 Acidithiobacillus ferrivorans 786 0 33059 species 1 1034 Acidithiobacillus caldus 0 920 species 1 938 Acidithiobacillus ferrooxidans 562 1 class 0 28211 Alphaproteobacteria 2035 515765 2 order 255473 0 702 family 0 255474 2 702 2 0 208215 genus 1 Parvularcula 702 1 Parvularcula bermudensis 701 1 species 0 208216 5678 0 82117 no rank 8 2 0 62654 clade 584 2 767891 0 1 genus Candidatus Puniceispirillum 1 584 583 Candidatus Puniceispirillum marinum species 767892 0 1 15 1145 Micavibrio 0 213485 1 genus 2 Micavibrio aeruginosavorus 1130 1 0 349221 species 2 0 1632780 genus 1 Phreatobacter 2492 74 0 1868589 species 1 2418 Phreatobacter sp. S-12 Polymorphum 21 1457 2 0 991903 1 genus 0 991904 species 1 1436 Polymorphum gilvum 1921002 0 order 1 6 2027 46 Holosporales 815 2 family 2100208 0 815 1 Candidatus Nucleicultrix genus 1 0 1509243 2 1 species 0 1509244 Candidatus Nucleicultrix amoebiphila 814 388 1777752 0 family 2 2 1 genus 0 1521255 Candidatus Paracaedibacter 4 388 384 Candidatus Paracaedibacter acanthamoebae species 0 91604 1 family 0 44746 1 778 no rank 0 204454 1 778 1 0 86106 species endosymbiont of Acanthamoeba sp. UWC8 778 Rickettsiales 72 17228 54 1 order 0 766 no rank 1699067 0 1 932 1 species 0 1528098 Rickettsiales bacterium Ac37b 932 309 1 1328881 0 family genus 0 411566 1 309 1 0 234827 species Candidatus Midichloria mitochondrii 309 Rickettsiaceae 8197 7 28 family 1 0 775 2115980 0 genus 1 2 552 1 Candidatus Phycorickettsia 1 0 2115978 species Candidatus Phycorickettsia trachydisci 551 tribe 0 33988 25 7638 genus 1 69474 0 2 1351 1 Orientia 1 0 784 species Orientia tsutsugamushi 1350 23 0 780 genus 1 Rickettsia 6287 675 114295 0 no rank 1 523 Rickettsia endosymbiont of Bemisia tabaci 523 1 species 0 337479 2 0 1129742 species group 951 1 species 0 33990 Rickettsia bellii 648 species 0 788 1 303 Rickettsia canadensis species group 0 114292 2 953 1 species 0 785 Rickettsia typhi 442 species 782 0 1 511 Rickettsia prowazekii 17 114277 0 species group 3185 0 783 species 1 94 Rickettsia rickettsii 0 786 species 1 402 Rickettsia akari Rickettsia parkeri 28 1 species 35792 0 species 0 35788 1 73 Rickettsia africae Rickettsia australis 549 1 0 787 species 158 Rickettsia amblyommatis 0 33989 species 1 1 33991 0 species Rickettsia montanensis 63 0 1105106 species 1 34 Rickettsia philipii Rickettsia monacensis 275 1 0 109232 species Rickettsia conorii 47 1 0 781 species 258 Rickettsia japonica 0 35790 species 1 159 Rickettsia peacockii 47589 0 species 1 1 species 0 35794 Rickettsia slovaca 47 505 Rickettsia felis species 0 42862 1 136 Rickettsia rhipicephali species 0 33992 1 Rickettsia heilongjiangensis 257 1 species 0 226665 1 species 0 35791 Rickettsia massiliae 100 23 0 942 family 1 Anaplasmataceae 7718 20 952 0 tribe 8 2689 39 2689 Wolbachia 1 genus 0 953 8 7 no rank 0 2640676 2650 Wolbachia endosymbiont of Brugia malayi 315 1 80849 0 species 1 species 66084 0 Wolbachia sp. wRi 252 Wolbachia endosymbiont of Onchocerca volvulus 520 1 species 0 77551 0 246273 species 1 137 Wolbachia endosymbiont of Cimex lectularius 1 species 0 163164 Wolbachia endosymbiont of Drosophila melanogaster 327 Wolbachia endosymbiont of Onchocerca ochengi 527 1 species 100901 0 Wolbachia endosymbiont of Drosophila simulans 572 1 0 77038 species 4 1 genus 0 33993 Neorickettsia 5 797 1 950 0 species Neorickettsia risticii 224 Neorickettsia helminthoeca 104 1 species 0 33994 1 0 951 species Neorickettsia sennetsu 464 Ehrlichia 24 3333 6 1 genus 943 0 585 106181 0 no rank 1 391036 0 species 1 585 Ehrlichia sp. HF 4 106178 0 species group 2724 764 Ehrlichia ruminantium 0 779 species 1 587 Ehrlichia chaffeensis 945 0 species 1 653 Ehrlichia muris species 0 35795 1 1 0 944 species Ehrlichia canis 720 1 879 Anaplasma 0 768 1 genus 4 Anaplasma centrale 276 1 0 769 species 1 species group 106179 0 278 278 Anaplasma phagocytophilum 0 948 species 1 1 0 770 species Anaplasma marginale 324 Rhizobiales 224590 2234 210 356 0 order 1 0 255475 1 family 7 41 6173 Aurantimonadaceae 4806 79 Martelella genus 1 0 293088 4 Martelella mediterranea 1579 1 species 0 293089 Martelella endophytica 1592 1 species 0 1486262 2629616 0 no rank 1 1556 1 species 0 686597 Martelella sp. AD-3 1556 2 0 414371 genus 1 Aureimonas 1326 27 1 no rank 2615206 0 1299 1 species 0 1349819 Aureimonas sp. AU20 1299 Brucellaceae 8186 38 20 family 1 0 118882 1 genus 0 528 5 54 4452 Ochrobactrum species 0 571256 1 1418 Ochrobactrum pituitosum Ochrobactrum sp. A44 929 1 0 271865 species species 0 419475 1 930 Ochrobactrum pseudogrignonense Ochrobactrum anthropi 1121 1 0 529 species 3696 1507 Brucella 234 0 genus 1 14 1 species 0 120577 Brucella ceti 181 1 444163 0 species Brucella microti 43 842 no rank 0 2632610 4 Brucella sp. 2002734562 53 1 0 1891098 species 179 Brucella sp. 09RB8471 species 0 1149952 1 Brucella sp. 09RB8910 280 1 species 0 1844051 Brucella sp. 141012304 330 1 1885919 0 species Brucella melitensis 114 1 species 0 29459 75 Brucella suis 29461 0 species 1 1 0 981386 species Brucella vulpis 457 0 235 species 1 93 Brucella abortus species 0 236 1 36 Brucella ovis 168 Brucella pinnipedialis species 120576 0 1 Brucella canis 180 1 species 0 36855 Rhizobiaceae 74799 856 53 0 82115 family 1 15565 0 227292 no rank 10 12469 219 Sinorhizobium 28105 0 genus 1 7 1 0 663276 species group 3224 380 0 species 1 3224 Sinorhizobium fredii Sinorhizobium medicae 1227 1 110321 0 species 2541 Sinorhizobium meliloti 0 382 species 1 Sinorhizobium americanum 1979 1 0 194963 species 2 no rank 2613772 0 3279 species 794846 0 1 1235 Sinorhizobium sp. CCBAU 05631 Sinorhizobium sp. RAC02 2044 1 species 0 1842534 3 genus 1 0 106591 Ensifer 3096 19 1 0 716925 species Ensifer sojae 1420 1657 Ensifer adhaerens species 0 106592 1 Shinella 2239 16 2 genus 1 323620 0 2223 1 2643062 0 no rank 2223 Shinella sp. HZN7 0 879274 species 1 no rank 0 227290 34 53955 25 0 379 1 genus Rhizobium 2629 38317 Rhizobium tropici 1128 1 species 0 398 species 0 396 1 2559 Rhizobium phaseoli 15698 no rank 2613769 0 19 1 Rhizobium sp. N741 1703967 0 species 1 139 Rhizobium sp. N731 species 0 1703966 1 955 Rhizobium sp. Kim5 species 2020311 0 1 139 Rhizobium sp. N1314 0 1703961 species 1 1259 Rhizobium sp. Y9 1914541 0 species 1 Rhizobium sp. CIAT894 1152 1 species 0 2020312 1 species 0 2028343 Rhizobium sp. 10195 1453 1126 Rhizobium sp. N324 species 0 1703969 1 species 0 2048897 1 1681 Rhizobium sp. NXC24 0 1981173 species 1 820 Rhizobium sp. NXC14 1703960 0 species 1 1 Rhizobium sp. N113 146 Rhizobium sp. TAL182 2020313 0 species 1 Rhizobium sp. IE4771 1176 1 species 0 1301032 species 0 1571470 1 2344 Rhizobium sp. ACO-34A 1 species 0 1125847 Rhizobium sp. NT-26 1035 0 1703968 species 1 8 Rhizobium sp. N871 species 0 424182 1 1164 Rhizobium sp. IRBG74 species 1869170 0 1 1097 Rhizobium sp. S41 2 Rhizobium sp. N1341 species 0 1703962 1 Rhizobium leguminosarum 8976 1 species 0 384 56730 0 species 1 2725 Rhizobium gallicum Rhizobium etli 4602 1 species 0 29449 0 357 genus 1 7 13168 292 Agrobacterium 0 373 species 1 1472 Agrobacterium vitis 2848 0 2632611 no rank 2 0 1842536 species 1 1238 Agrobacterium sp. RAC06 1610 Agrobacterium sp. H13-3 species 0 861208 1 0 359 species 1 1488 Agrobacterium rhizogenes 7068 1183400 0 species group 2 Agrobacterium tumefaciens 5505 1 358 0 species Agrobacterium fabrum 1563 1 species 1176649 0 1 genus 0 1525371 2 14 2470 Neorhizobium 2456 Neorhizobium galegae species 0 399 1 2184 15 Liberibacter genus 1 34019 0 6 1 0 309868 species Candidatus Liberibacter americanus 406 658 Candidatus Liberibacter solanacearum species 0 556287 1 1 0 34020 species Candidatus Liberibacter africanus 262 0 34021 species 1 242 Candidatus Liberibacter asiaticus Liberibacter crescens 601 1 species 0 1273132 1 family 0 119043 3 6 793 Rhodobiaceae 31 787 Parvibaculum 1 genus 0 256616 2 0 256618 species 1 756 Parvibaculum lavamentivorans 19 family 1 45401 0 Hyphomicrobiaceae 14531 113 0 29407 1 genus 2 86 1590 Rhodoplanes 1504 no rank 2619116 0 1 1504 Rhodoplanes sp. Z2-YC6860 0 674703 species 1 genus 1 0 119044 2 756 4 Filomicrobium Candidatus Filomicrobium marinum 752 1 1608628 0 species 834 15 Rhodomicrobium 0 1068 genus 1 2 species 0 1069 1 819 Rhodomicrobium vannielii 1 genus 0 59282 2 58 1635 Blastochloris 1 species 0 1079 Blastochloris viridis 1577 2 1082930 0 genus 1 Pelagibacterium 846 5 841 Pelagibacterium halotolerans species 0 531813 1 4390 77 Devosia genus 1 0 46913 4 3 no rank 196773 0 4313 1164 Devosia sp. I507 0 2083786 species 1 Devosia sp. H5989 1593 1 0 1643450 species 0 1736675 species 1 1556 Devosia sp. A16 4 1 genus 0 81 Hyphomicrobium 46 4367 1117 0 2619925 no rank 1 Hyphomicrobium sp. MC1 1117 1 species 0 717785 1 species 0 53399 Hyphomicrobium denitrificans 1612 species 0 1427356 1 1592 Hyphomicrobium nitrativorans Methylocystaceae 21 3200 6 0 31993 1 family 1 genus 0 133 3 37 1899 Methylocystis 1 0 655015 species Methylocystis bryophila 962 1 no rank 2625913 0 900 Methylocystis sp. SC2 900 1 species 0 187303 genus 1 425 0 2 1280 35 Methylosinus 1245 Methylosinus trichosporium 0 426 species 1 3961 no rank 0 119042 6 0 1572860 genus 1 2 1782 36 Hartmannibacter species 1482074 0 1 1746 Hartmannibacter diazotrophicus Pseudorhodoplanes 44 1043 2 1734920 0 1 genus 0 1235591 species 1 999 Pseudorhodoplanes sinuspersici Methyloceanibacter 18 1136 2 1 genus 0 1484898 Methyloceanibacter caenitepidi 1118 1 species 0 1384459 22162 157 Phyllobacteriaceae 0 69277 family 1 20 2 0 31988 genus 1 Aminobacter 2438 33 2405 Aminobacter aminovorans 83263 0 species 1 Chelativorans 4 1498 2 1 genus 0 449972 2643807 0 no rank 1 1494 1494 Chelativorans sp. BNC1 species 0 266779 1 11 1401 Phyllobacterium 0 28100 1 genus 2 0 1867719 species 1 1390 Phyllobacterium zundukense 1736 18 Nitratireductor genus 1 245876 0 2 Nitratireductor basaltis 1718 1 0 472175 species 9 0 68287 1 genus Mesorhizobium 494 13766 1616 Mesorhizobium loti 0 381 species 1 1 species 0 593909 Mesorhizobium opportunistum 1744 0 39645 species 1 2457 Mesorhizobium ciceri 1670800 0 species 1 1191 Mesorhizobium sp. B7 1 0 2066070 species Mesorhizobium japonicum 1501 species 0 71433 1 1427 Mesorhizobium amorphae 1869 1 325217 0 no rank Mesorhizobium sp. WSM1497 1869 1 species 278153 0 species 536018 0 1 1467 Mesorhizobium australicum 1166 14 Hoeflea 0 274591 genus 1 2 1 no rank 2614931 0 1152 Hoeflea sp. IMCC20628 1152 1 0 1620421 species 0 119045 1 family 15 114 25934 Methylobacteriaceae 2 186650 0 genus 1 Microvirga 2030 30 1 0 1882682 species Microvirga ossetica 2000 7690 3 2282523 0 genus 1330 Methylobacterium zatmanii 29429 0 species 1 3952 Methylobacterium extorquens species 408 0 1 1 0 223967 species Methylobacterium populi 2408 16100 642 Methylobacterium 0 407 genus 1 9 1 species 334852 0 Methylobacterium oryzae 1827 1968 Methylobacterium nodulans 0 114616 species 1 1 species 31998 0 Methylobacterium radiotolerans 2447 5299 no rank 2615210 0 3 1472 Methylobacterium sp. AMS5 925818 0 species 1 Methylobacterium sp. C1 2278 1 1479019 0 species 1 species 0 426117 Methylobacterium sp. 4-46 1549 Methylobacterium aquaticum 2108 1 0 270351 species 1809 Methylobacterium phyllosphaerae 0 418223 species 1 Chelatococcaceae 24 3452 4 1 family 0 2036754 3 genus 1 0 28209 Chelatococcus 3428 94 1508 Chelatococcus daeguensis 0 444444 species 1 no rank 0 2638111 1 1826 species 1702325 0 1 1826 Chelatococcus sp. CO-6 22 9389 Bartonellaceae 1 family 0 772 18 17 genus 1 0 773 Bartonella 9367 199 Bartonella clarridgeiae 379 1 species 0 56426 0 1686310 species 1 1768 Bartonella apis 0 33045 species 1 474 Bartonella grahamii 1 0 85701 species Bartonella tribocorum 1133 species 0 803 1 254 Bartonella quintana 1 species 38323 0 Bartonella henselae 777 Bartonella vinsonii 240 1 species 0 33047 2750 6 2645622 0 no rank 362 Bartonella sp. JB15 0 1933906 species 1 1134 Bartonella sp. WD16.2 0 1933904 species 1 1 0 1933912 species Bartonella sp. Raccoon60 266 1 0 1933910 species Bartonella sp. A1379B 266 1 species 0 1933907 Bartonella sp. JB63 363 1 species 0 515256 Bartonella sp. 1-1C 359 Bartonella ancashensis 414 1 0 1318743 species Bartonella australis 285 1 species 0 388640 Bartonella bacilliformis 694 1 species 0 774 Xanthobacteraceae 87 6176 7 0 335928 1 family 2 genus 1 0 279 Xanthobacter 1834 58 1776 Xanthobacter autotrophicus 0 280 species 1 0 6 1 genus 2 58 2419 Azorhizobium Azorhizobium caulinodans 2361 1 species 0 7 152053 0 1 genus 2 166 1836 Starkeya 1670 Starkeya novella species 0 921 1 41294 0 1 family 26 627 41533 Bradyrhizobiaceae 24 1436 Nitrobacter 1 genus 0 911 3 Nitrobacter hamburgensis 861 1 0 912 species 551 Nitrobacter winogradskyi 913 0 species 1 2 genus 1 40136 0 Oligotropha 1089 20 1069 Oligotropha carboxidovorans 0 40137 species 1 5 genus 1 0 85413 Bosea 7613 127 2300 Bosea vaviloviae species 0 1526658 1 no rank 0 2653178 3 5186 0 2015316 species 1 1606 Bosea sp. AS-1 1707 Bosea sp. PAMC 26642 species 0 1792307 1 1 species 0 1842539 Bosea sp. RAC05 1873 2 genus 1 0 1073 Rhodopseudomonas 8769 269 1 species 0 1076 Rhodopseudomonas palustris 8500 1649510 0 genus 1 2 932 11 Variibacter 921 Variibacter gotjawalensis 0 1333996 species 1 698 21067 Bradyrhizobium 374 0 1 genus 11 1 species 0 1274631 Bradyrhizobium icense 1487 Bradyrhizobium diazoefficiens 4051 1 species 1355477 0 2894 Bradyrhizobium japonicum 0 375 species 1 1 species 0 44255 Bradyrhizobium oligotrophicum 1596 no rank 0 2631580 6 10341 species 0 114615 1 1657 Bradyrhizobium sp. ORS 278 Bradyrhizobium sp. CCGE-LA001 1482 1 0 1223566 species 1948 Bradyrhizobium sp. BTAi1 species 0 288000 1 1926 Bradyrhizobium sp. SK17 2057741 0 species 1 1845 Bradyrhizobium sp. ORS 285 115808 0 species 1 Bradyrhizobium sp. 1483 1 species 0 376 2067 5 Beijerinckiaceae 45404 0 family 1 5 1037 13 Methylocella 0 120652 genus 1 2 Methylocella silvestris 1024 1 species 199596 0 Beijerinckia 1025 10 2 genus 1 0 532 1 species 0 533 Beijerinckia indica 1015 20 order 1 204458 0 Caulobacterales 21464 133 19 0 76892 family 1 Caulobacteraceae 21331 348 2 1 genus 76890 0 Asticcacaulis 12 1249 0 78587 species 1 1237 Asticcacaulis excentricus 137 9954 Caulobacter 1 genus 0 75 6 1 no rank 2648921 0 2416 species 366602 0 1 2416 Caulobacter sp. K31 1381 Caulobacter henricii species 69395 0 1 species 155892 0 1 3154 Caulobacter vibrioides 1 69666 0 species Caulobacter mirabilis 1535 species 0 88688 1 1331 Caulobacter segnis 7522 226 Brevundimonas genus 1 0 41275 7 1288 Brevundimonas naejangsanensis species 588932 0 1 3790 no rank 2622653 0 3 Brevundimonas sp. GW460-12-10-14-LB2 1365 1 0 1827469 species Brevundimonas sp. LM2 1364 1 species 0 1938605 Brevundimonas sp. DS20 1061 1 species 0 1532555 Brevundimonas subvibrioides 970 1 species 74313 0 0 41276 species 1 1248 Brevundimonas vesicularis 1515 11 Phenylobacterium genus 1 0 20 2 1504 Phenylobacterium zucineum 0 284016 species 1 743 no rank 0 81440 1 743 Caulobacteraceae bacterium OTSz_A_272 1759059 0 species 1 2747 order 0 2800060 6 0 69657 family 1 6 2747 61 Hyphomonadaceae 1 genus 0 85 3 20 1827 Hyphomonas 945 Hyphomonas neptunium 81032 0 species 1 862 2630699 0 no rank 1 species 0 1906738 1 862 Hyphomonas sp. Mor2 3 859 Hirschia 1 genus 2723 0 2 Hirschia baltica 856 1 species 0 2724 order 1 0 204455 92 84421 761 Rhodobacterales 0 31989 1 family 91 1547 83660 Rhodobacteraceae 0 188905 1 genus 2 13 1119 Jannaschia no rank 2645469 0 1 1106 Jannaschia sp. CCS1 1106 1 species 290400 0 783 119541 0 genus 1 Rhodobaca barguzinensis 783 1 0 441209 species genus 1 0 1060 5 7922 113 Rhodobacter 1705 Rhodobacter capsulatus species 0 1061 1 1 species 0 1063 Rhodobacter sphaeroides 4093 2 196779 0 no rank 2011 870 Rhodobacter sp. LPB0142 0 1850250 species 1 1141 Rhodobacter sp. CZR27 2033869 0 species 1 5 Thalassococcus 0 436357 genus 1 1 genus 74032 0 2 12 878 Antarctobacter species 74033 0 1 866 Antarctobacter heliothermus 2720 8 Ruegeria genus 1 0 97050 3 1853 Ruegeria pomeroyi species 89184 0 1 859 no rank 2625375 0 1 292414 0 species 1 859 Ruegeria sp. TM1040 1 genus 0 875170 5 59 4521 Celeribacter 1 species 0 1411902 Celeribacter manganoxidans 1578 Celeribacter marinus 450 1 1397108 0 species 1 0 1758178 species Celeribacter ethanolicus 1061 1 1208324 0 species Celeribacter indicus 1373 genus 0 1284657 1 531 Planktomarina temperata 531 1 0 1284658 species Marivivens 571 22 2 0 1759396 genus 1 2622455 0 no rank 1 549 1 species 0 1920883 Marivivens sp. JLT3646 549 2 0 74030 genus 1 Roseovarius 1180 11 Roseovarius mucosus 1169 1 0 215743 species 8486 125 Phaeobacter genus 1 0 302485 5 Phaeobacter piscinae 2322 1 species 0 1580596 0 221822 species 1 3115 Phaeobacter inhibens species 0 60890 1 2241 Phaeobacter gallaeciensis 683 Phaeobacter porticola 0 1844006 species 1 Tateyamaria 746 4 2 0 299261 genus 1 species 299262 0 1 742 Tateyamaria omphalii Leisingera 8 1246 2 1 genus 0 191028 Leisingera methylohalidivorans 1238 1 0 133924 species Roseobacter 1452 9 3 genus 1 2433 0 Roseobacter denitrificans 696 1 species 0 2434 0 42443 species 1 747 Roseobacter litoralis 9 Loktanella genus 245186 0 1 4 34008 0 genus 1 Rhodovulum 4964 238 Rhodovulum sulfidophilum 1945 1 species 0 35806 2781 2631432 0 no rank 2 1 species 0 308754 Rhodovulum sp. MB263 1826 Rhodovulum sp. P5 955 1 0 1564506 species 1 genus 360528 0 2 21 1980 Pelagibaca 1959 Pelagibaca abyssi 0 1250539 species 1 Octadecabacter 11 2120 4 0 53945 1 genus species 0 1458307 1 721 Octadecabacter temperatus Octadecabacter arcticus 532 1 species 53946 0 Octadecabacter antarcticus 856 1 species 0 1217908 0 263377 genus 2 3522 Thiobacimonas profunda 1797 1 0 1229727 species 1725 no rank 0 2640570 1 1 species 1792508 0 Yangia sp. CCB-MM3 1725 1097466 0 genus 1 2 1558 5 Defluviimonas Defluviimonas alba 1553 1 0 1335048 species 2309 32 Pannonibacter genus 1 0 227873 2 1 species 0 121719 Pannonibacter phragmitetus 2277 478070 0 genus 1 4 4640 80 Labrenzia Labrenzia aggregata 1634 1 species 0 187304 2926 no rank 0 2648686 2 0 1674922 species 1 1341 Labrenzia sp. CP4 Labrenzia sp. VG12 1585 1 0 2021862 species 1 genus 1649279 0 1094 1 species 0 379347 Ruegeria mobilis 1094 genus 1 0 309512 2 1079 4 Dinoroseobacter 1 0 215813 species Dinoroseobacter shibae 1075 6 420 Halocynthiibacter 0 1579315 1 genus 2 1 1579316 0 species Halocynthiibacter arcticus 414 2 no rank 58840 0 1969 1 0 1904441 species Rhodobacteraceae bacterium 835 species 0 2033435 1 1134 Rhodobacteraceae bacterium QY30 Marinovum 1531 26 2 367771 0 genus 1 1 0 42444 species Marinovum algicola 1505 201 12277 Paracoccus 0 265 1 genus 9 1 0 34003 species Paracoccus aminophilus 1125 2044 Paracoccus yeei 0 147645 species 1 1659 Paracoccus zhejiangensis 0 1077935 species 1 species 0 34004 1 1708 Paracoccus aminovorans 1203 Paracoccus contaminans species 0 1945662 1 889 1 246570 0 no rank 0 1529068 species 1 889 Paracoccus sp. BM15 1 0 266 species Paracoccus denitrificans 2190 1 0 2065379 species Paracoccus sp. CBA4604 1258 1432 0 2211641 genus 1 1 0 245188 species Loktanella vestfoldensis 1432 Sagittula 14 1692 2 58842 0 1 genus 1 no rank 2624628 0 1678 Sagittula sp. P11 1678 1 species 0 2009329 0 159345 genus 1 2 856 3 Roseibacterium species 0 159346 1 853 Roseibacterium elongatum 0 1609958 1 genus 2 1 1061 Confluentimicrobium 1 2643318 0 no rank 1060 Confluentimicrobium sp. EMB200-NS6 1060 1 1609966 0 species 2 0 285107 genus 1 Thioclava 1130 7 1123 Thioclava nitratireducens species 0 1915078 1 3 genus 1 0 92944 Ketogulonicigenium 1981 10 92945 0 species 1 1068 Ketogulonicigenium vulgare 1 92947 0 species Ketogulonicigenium robustum 903 11 2329 Sulfitobacter 0 60136 1 genus 3 1085 Sulfitobacter pseudonitzschiae 1402135 0 species 1 1233 1 no rank 0 196795 Sulfitobacter sp. AM1-D1 1233 1 1917485 0 species 0 54526 order 1 9 3277 5 Pelagibacterales 618 2 Candidatus Fonsibacter 0 2045213 genus 1 2 species 0 1925548 1 616 Candidatus Fonsibacter ubiquis 6 1 family 0 1655514 Pelagibacteraceae 16 2654 1494 no rank 1655516 0 2 625 alpha proteobacterium HIMB59 species 0 744985 1 869 alpha proteobacterium HIMB5 0 859653 species 1 Candidatus Pelagibacter 6 1144 3 1 genus 0 198251 404 1 2647897 0 no rank 0 1002672 species 1 404 Candidatus Pelagibacter sp. IMCC9063 0 198252 species 1 734 Candidatus Pelagibacter ubique 82 0 204457 1 order Sphingomonadales 543 77205 22 0 335929 1 family Erythrobacteraceae 260 17168 3 0 1295327 1 genus Croceicoccus 61 2280 1208 Croceicoccus marinus 0 450378 species 1 1011 Croceicoccus naphthovorans 1348774 0 species 1 2 0 2800681 genus 1738 503 Erythrobacter atlanticus species 0 1648404 1 1 0 502682 species Erythrobacter gangjinensis 1235 1101 2800682 0 genus 1 Altererythrobacter namhicola 1101 1 0 645517 species 2167 101 Altererythrobacter genus 1 361177 0 4 Altererythrobacter epoxidivorans 549 1 0 361183 species species 476157 0 1 646 Altererythrobacter ishigakiensis Altererythrobacter atlanticus 871 1 0 1267766 species 4991 no rank 2800788 0 6 Porphyrobacter 2104 53 3 0 1111 genus 1 2683265 0 no rank 2 2051 Porphyrobacter HT-58-2 1030 1 2023229 0 species 0 1896196 species 1 1021 Porphyrobacter sp. LM 6 Erythrobacter 2887 135 3 0 1041 genus 1 1987 Erythrobacter litoralis 0 39960 species 1 1 0 1112 species Porphyrobacter neustonensis 765 946 1 0 2800685 genus Altererythrobacter marensis 946 1 species 0 543877 2 genus 2800686 0 1273 Altererythrobacter mangrovi 537 1 species 0 1982042 Altererythrobacter dongtanensis 736 1 species 692370 0 2 genus 1855416 0 2412 1 species 0 266951 Erythrobacter seohaensis 1531 species 0 192812 1 881 Erythrobacter flavus 786 59494 Sphingomonadaceae 0 41297 1 family 59 2 genus 1 0 1649486 Rhizorhabdus 1340 16 1 species 0 1850238 Rhizorhabdus dicambivorans 1324 Blastomonas 15 1060 2 1 genus 0 150203 0 2626550 no rank 1 1045 Blastomonas sp. RAC04 1045 1 species 0 1842535 0 13687 genus 1 15 16942 416 Sphingomonas 1090 Sphingomonas taxi species 0 1549858 1 species 0 93064 1 1225 Sphingomonas koreensis 0 196159 no rank 6 6357 1 0 1938607 species Sphingomonas sp. LM7 895 1 species 0 1390395 Sphingomonas sp. LK11 1280 species 0 1327635 1 1126 Sphingomonas sp. Cra20 1 0 1030157 species Sphingomonas sp. KC8 802 1 0 1961362 species Sphingomonas sp. NIC1 1103 0 745310 species 1 1151 Sphingomonas sp. MM-1 species 0 152682 1 1248 Sphingomonas melonis 2 1 species 160791 0 Sphingomonas wittichii 1599 3093 1494 Sphingomonas sp. DC-6 strain 0 1283312 1 1471 Sphingomonas sanxanigenens 0 397260 species 1 1 species 0 1609977 Sphingomonas hengshuiensis 1038 1 0 1560345 species Sphingomonas panacis 1004 681 2709685 0 genus 1 266812 0 species 1 681 Sphingorhabdus flavimaris 126 5247 Novosphingobium 0 165696 1 genus 5 1226 1 no rank 2644732 0 Novosphingobium sp. PP1Y 1226 1 0 702113 species Novosphingobium aromaticivorans 948 1 species 0 48935 species 0 205844 1 1335 Novosphingobium pentaromativorans species 0 158500 1 1612 Novosphingobium resinovorum 10 genus 1 0 165697 Sphingopyxis 9775 413 Sphingopyxis terrae 781 1 0 33052 species 0 2614943 no rank 4 3765 Sphingopyxis sp. LPB0140 440 1 0 1913578 species 0 1357916 species 1 967 Sphingopyxis sp. QXT-31 1502 Sphingopyxis sp. 113P3 0 292913 species 1 856 Sphingopyxis sp. MG species 0 1866325 1 1 species 33050 0 Sphingopyxis macrogoltabida 1972 Sphingopyxis fribergensis 941 1 species 0 1515612 1008 Sphingopyxis granuli 0 267128 species 1 1 0 117207 species Sphingopyxis alaskensis 895 15 165695 0 genus 1 Sphingobium 16561 430 1 0 120107 species Sphingobium cloacae 1319 Sphingobium hydrophobicum 1075 1 0 1673076 species 1039 Sphingobium indicum 0 332055 species 1 6 2611147 0 no rank 6775 1198 Sphingobium sp. EP60837 0 1855519 species 1 970 Sphingobium sp. SYK-6 627192 0 species 1 Sphingobium sp. RAC03 1459 1 1843368 0 species 968 Sphingobium sp. MI1205 species 0 407020 1 Sphingobium sp. YBL2 1154 1 0 484429 species species 0 1315974 1 1026 Sphingobium sp. TKS 1177 Sphingobium chlorophenolicum 0 46429 species 1 1208 Sphingobium baderi 0 1332080 species 1 1 species 76947 0 Sphingobium herbicidovorans 914 Sphingobium yanoikuyae 1639 1 0 13690 species 985 Sphingobium japonicum 332056 0 species 1 1670 genus 2685927 0 1 1670 Sphingomonas sp. JJ-A5 species 1921510 0 1 2 0 541 genus 1 Zymomonas 2789 18 Zymomonas mobilis 2771 1 0 542 species 3 1 genus 1434046 0 Sphingorhabdus 30 1724 1694 2614947 0 no rank 2 1 species 0 2077182 Sphingorhabdus sp. YGSMI21 893 801 Sphingorhabdus sp. M41 0 1806885 species 1 2 1 genus 0 72173 Citromicrobium 49 919 0 2630544 no rank 1 870 1 species 0 1634516 Citromicrobium sp. JL477 870 Magnetococcales 708 12 4 order 1 0 1191478 Magnetococcaceae 696 7 3 0 1191479 family 1 2 0 162171 1 genus Magnetococcus 5 689 684 Magnetococcus marinus species 0 1124597 1 1143 order 0 2800059 2 1143 2800061 0 family 2 2 genus 1 74317 0 Maricaulis 1143 26 Maricaulis maris 1117 1 74318 0 species 1 order 0 204441 66 725 72540 Rhodospirillales Acetobacteraceae 549 30164 35 1 family 433 0 2 1 genus 89583 0 Gluconacetobacter 15 1253 species 0 33996 1 1238 Gluconacetobacter diazotrophicus 1 genus 0 91914 2 10 1108 Asaia species 91915 0 1 1098 Asaia bogorensis 793 39 Kozakia genus 1 0 153497 2 species 0 153496 1 754 Kozakia baliensis Gluconobacter 64 4116 3 0 441 1 genus 3071 Gluconobacter oxydans 0 442 species 1 Gluconobacter albidus 981 1 318683 0 species 3 0 522 genus 1 Acidiphilium 2248 61 species 0 524 1 1103 Acidiphilium cryptum 1084 Acidiphilium multivorum species 0 62140 1 0 364409 genus 1 2 2724 28 Granulibacter 0 364410 species 1 2696 Granulibacter bethesdensis 5 genus 1 0 1434011 Komagataeibacter 4529 138 0 33995 species 1 832 Komagataeibacter europaeus Komagataeibacter nataicola 1122 1 0 265960 species 580 Komagataeibacter medellinensis species 0 1177712 1 1857 Komagataeibacter xylinus species 0 28448 1 2 0 1602345 genus 1 Parasaccharibacter 965 2 Parasaccharibacter apium 963 1 species 0 1510841 2 0 320496 genus 1 Neoasaia 698 7 691 Neoasaia chiangmaiensis 0 320497 species 1 Acetobacter 7470 135 8 genus 1 434 0 658 Acetobacter persici species 0 1076596 1 1364 Acetobacter senegalensis 0 446692 species 1 species 65959 0 1 499 Acetobacter pomorum 2779 Acetobacter pasteurianus 0 438 species 1 Acetobacter oryzifermentans 431 1 0 1633874 species 860 Acetobacter tropicalis 0 104102 species 1 744 subgenus 151157 0 1 species 0 435 1 744 Acetobacter aceti 0 125216 1 genus 3 133 3711 Roseomonas 1 257708 0 species Roseomonas gilardii 1646 1 no rank 2617492 0 1932 1932 Roseomonas sp. FDAARGOS_362 species 0 2018065 1 0 41295 family 1 30 41651 637 Rhodospirillaceae 29 2463 Thalassospira 0 168934 1 genus 3 Thalassospira sp. CSC3H3 1252 1 species 0 2048283 species 0 220697 1 1182 Thalassospira xiamenensis 5 1 genus 191 0 Azospirillum 366 14712 1 species 0 192 Azospirillum brasilense 4391 Azospirillum thiophilum 2728 1 0 528244 species species 0 193 1 5571 Azospirillum lipoferum 1656 Azospirillum humicireducens 0 1226968 species 1 2 genus 1 0 171436 Tistrella 2047 75 Tistrella mobilis 1972 1 species 171437 0 0 1543704 1 genus 2 52 2528 Niveispirillum Niveispirillum cyanobacteriorum 2476 1 species 0 1612173 3591 43 Rhodospirillum 0 1081 genus 1 3 2059 Rhodospirillum centenum species 0 34018 1 1 species 1085 0 Rhodospirillum rubrum 1489 9122 172 Magnetospirillum genus 1 13134 0 5 0 55518 species 1 2421 Magnetospirillum gryphiswaldense Magnetospirillum magneticum 2540 1 0 84159 species 3989 2 no rank 2617991 0 Magnetospirillum sp. XM-1 2060 1 0 1663591 species Magnetospirillum sp. ME-1 1929 1 0 1639348 species 1 genus 0 1543705 2 20 3095 Nitrospirillum 3075 Nitrospirillum amazonense species 28077 0 1 2 1 genus 0 1804663 Haematospirillum 1 524 1 species 0 1549855 Haematospirillum jordaniae 523 Magnetospira 4 1305 2 1 genus 0 1182780 no rank 2685734 0 1 1301 Magnetospira sp. QH-2 1301 1 species 0 1288970 556 0 1263978 genus 1 1 species 0 1263979 Candidatus Endolissoclinum faulkneri 556 2 genus 1 0 1612157 Pararhodospirillum 1071 12 Pararhodospirillum photometricum 1059 1 1084 0 species 0 28216 class 1 353 430727 1080 Betaproteobacteria 0 206389 1 order 22 334 23000 Rhodocyclales Rhodocyclaceae 157 5652 6 0 75787 1 family 0 551759 1 genus 2 32 1867 Aromatoleum 1 551760 0 species Aromatoleum aromaticum 1835 1311 no rank 75788 0 1 0 1898103 species 1 1311 Rhodocyclaceae bacterium Azospira 2317 47 2 0 146937 genus 1 1 0 146939 species Azospira oryzae 2270 Zoogloeaceae 15577 354 12 2008794 0 family 1 6 0 33057 genus 1 Thauera 9272 221 3974 0 2609274 no rank 2 species 2005884 0 1 2277 Thauera sp. K11 Thauera sp. MZ1T 1697 1 species 0 85643 species 0 96773 1 1618 Thauera chlorobenzoica 1922 Thauera humireducens species 0 1134435 1 0 59405 species 1 1537 Thauera aromatica 5951 189 Azoarcus genus 1 12960 0 5 1297 Azoarcus olearius 0 418699 species 1 Azoarcus sp. SY39 1162 1 species 0 2067960 no rank 2629479 0 2 3303 Azoarcus sp. KH32C 1570 1 species 0 748247 Azoarcus sp. CIB 1733 1 species 0 198107 1437 25 Azonexaceae family 1 0 2008795 3 Dechloromonas 17 1412 2 0 73029 1 genus Dechloromonas aromatica 1395 1 0 259537 species Neisseriales 37514 524 37 order 1 0 206351 Chromobacteriaceae 302 16593 13 0 1499392 1 family 8231 4 0 90153 no rank 8231 114 Chromobacterium 0 535 genus 1 4 2141 no rank 0 2641838 1 2141 Chromobacterium sp. ATCC 53434 0 2059672 species 1 2503 Chromobacterium violaceum species 0 536 1 3473 Chromobacterium vaccinii 0 1108595 species 1 0 187 1 genus 2 12 2116 Aquaspirillum 2104 2620219 0 no rank 1 2104 Aquaspirillum sp. LM1 0 1938604 species 1 Jeongeupia 34 1448 2 0 885864 1 genus 1414 1 2619593 0 no rank Jeongeupia sp. USM3 1414 1 species 1906741 0 Laribacter 2032 52 2 168470 0 genus 1 1 species 0 168471 Laribacter hongkongensis 1980 Pseudogulbenkiania 2464 16 2 0 568394 genus 1 1 no rank 2642558 0 2448 species 0 748280 1 2448 Pseudogulbenkiania sp. NH8B 20397 110 Neisseriaceae 481 0 family 1 23 Simonsiella 1 743 2 1 genus 71 0 742 Simonsiella muelleri species 0 72 1 Neisseria 14530 202 12 0 482 genus 1 Neisseria elongata 899 1 species 0 495 2934 2 no rank 2623750 0 1 species 655307 0 Neisseria sp. KEM232 1215 1719 Neisseria sp. 10022 0 1853276 species 1 1185 Neisseria lactamica 486 0 species 1 485 0 species 1 714 Neisseria gonorrhoeae 0 488 species 1 1375 Neisseria mucosa species 0 490 1 1387 Neisseria sicca 487 0 species 1 2871 Neisseria meningitidis 1 1853278 0 species Neisseria sp. 10023 976 28091 0 species 1 878 Neisseria weaveri 0 326523 species 1 1109 Neisseria zoodegmatis 2 0 538 genus 1 Eikenella 1242 7 1235 Eikenella corrodens species 0 539 1 2 1193515 0 1 genus Snodgrassella 3 977 0 1196083 species 1 974 Snodgrassella alvi 25 1720 Vitreoscilla 0 59 1 genus 3 1 no rank 2627922 0 821 Vitreoscilla sp. C1 821 1 species 96942 0 874 Vitreoscilla filiformis 0 63 species 1 no rank 421605 0 1 1075 1 species 0 2052837 Neisseriaceae bacterium DSM 100970 1075 1594 2 0 33809 no rank 1311 Betaproteobacteria bacterium GR16-43 0 1904640 species 1 1 species 0 543913 beta proteobacterium CB 283 44 0 32003 order 1 Nitrosomonadales 21118 235 Methylophilaceae 5469 42 14 0 32011 family 1 16 656 Methylophilus 0 16 1 genus 2 no rank 2630143 0 1 640 1 species 0 1662285 Methylophilus sp. TWE2 640 0 359407 1 genus 3 11 1016 Methylotenera Methylotenera versatilis 612 1 species 0 1055487 1 species 0 359408 Methylotenera mobilis 393 939 1 Candidatus Methylopumilus 0 1679002 genus 1 3 1581557 0 species 1 410 Candidatus Methylopumilus planktonicus species 0 1581680 1 528 Candidatus Methylopumilus turicensis Methylobacillus 2 688 2 1 genus 0 404 Methylobacillus flagellatus 686 1 species 0 405 Methylovorus 46 2128 3 0 81682 1 genus 1034 1 2634027 0 no rank 1034 Methylovorus sp. MP688 0 887061 species 1 1048 Methylovorus glucosotrophus 0 266009 species 1 5 1 family 90627 0 Gallionellaceae 96 2129 1 genus 0 96 2 4 1080 Gallionella 1 0 370405 species Gallionella capsiferriformans 1076 0 314343 1 genus 2 26 953 Sideroxydans 927 Sideroxydans lithotrophicus species 0 63745 1 4 0 2772226 family 2219 Sulfuricella 1016 11 2 935200 0 genus 1 1 species 649841 0 Sulfuricella denitrificans 1005 2 0 1778653 genus 1 Sulfuriferula 1203 9 2637784 0 no rank 1 1194 1194 Sulfuriferula sp. AH1 0 1985873 species 1 12 family 1 0 206379 Nitrosomonadaceae 6538 39 7 genus 1 0 914 Nitrosomonas 4742 43 916 0 species 1 607 Nitrosomonas eutropha Nitrosomonas europaea 766 1 species 0 915 2 2609265 0 no rank 1488 Nitrosomonas sp. AL212 979 1 153948 0 species 509 Nitrosomonas sp. Is79A3 261292 0 species 1 Nitrosomonas ureae 925 1 0 44577 species 0 44574 species 1 913 Nitrosomonas communis 1757 18 Nitrosospira genus 1 35798 0 4 1 species 0 1231 Nitrosospira multiformis 497 1 0 1288494 species Nitrosospira lacus 651 0 35799 species 1 591 Nitrosospira briensis 1085 21 Thiobacillaceae family 1 2008790 0 3 42 1064 Thiobacillus 1 genus 919 0 2 species 0 36861 1 1022 Thiobacillus denitrificans 5 1 family 0 2008793 Sterolibacteriaceae 80 3443 1303 30 Methyloversatilis 378210 0 genus 1 2 no rank 2639971 0 1 1273 Methyloversatilis sp. RAC08 1273 1 species 0 1842540 0 1054211 1 genus 2 33 2060 Sulfuritalea species 0 748811 1 2027 Sulfuritalea hydrogenivorans 1 order 0 80840 236 3671 341959 Burkholderiales 2 0 80841 no rank 5641 Burkholderiales bacterium GJ-E10 776 1 species 0 1469502 4865 Burkholderiales bacterium YL45 species 0 1834205 1 family 1 0 119060 84 132645 1041 Burkholderiaceae genus 1827195 0 1 1361 Burkholderia sp. RPE64 1361 1 0 758793 species genus 2571159 0 1 700 700 Paraburkholderia rhizoxinica species 0 412963 1 9794 345 Pandoraea 0 93217 genus 1 10 0 445709 species 1 1099 Pandoraea thiooxydans Pandoraea vervacti 1107 1 species 0 656178 Pandoraea oxalativorans 1055 1 573737 0 species Pandoraea faecigallinarum 889 1 species 0 656179 1 0 93222 species Pandoraea sputorum 955 1470 Pandoraea pnomenusa 0 93220 species 1 species 0 93221 1 1102 Pandoraea pulmonicola 1 0 93219 species Pandoraea norimbergensis 847 925 Pandoraea apista species 93218 0 1 1 1614 Polynucleobacter 1 genus 0 44013 4 Polynucleobacter duraquae 446 1 species 0 1835254 716 Polynucleobacter asymbioticus 0 576611 species 1 1 species 576610 0 Polynucleobacter necessarius 451 Burkholderia 3233 68731 41 1 genus 32008 0 35017 87882 0 species group 19 1 species 95485 0 Burkholderia stabilis 1523 Burkholderia multivorans 2782 1 0 87883 species 663 Burkholderia latens species 0 488446 1 0 60550 species 1 665 Burkholderia pyrrocinia 1 species 0 482957 Burkholderia lata 5781 1 species 488447 0 Burkholderia contaminans 1041 species 101571 0 1 3033 Burkholderia ubonensis Burkholderia pseudomultivorans 862 1 1207504 0 species species 0 152500 1 706 Burkholderia dolosa species 0 1503055 1 825 Burkholderia territorii 860 Burkholderia metallica species 0 488729 1 1 0 488731 species Burkholderia seminalis 777 Burkholderia cepacia 4934 1 species 292 0 1141 Burkholderia stagnalis species 1503054 0 1 Burkholderia cenocepacia 4509 1 species 0 95486 1052 [Pseudomonas] mesoacidophila 0 265293 species 1 1 species 0 60552 Burkholderia vietnamiensis 1889 774 Burkholderia diffusa 0 488732 species 1 1 152480 0 species Burkholderia ambifaria 1200 1645 Burkholderia plantarii 0 41899 species 1 no rank 2613784 0 11 13544 0 640510 species 1 1604 Burkholderia sp. CCGE1001 Burkholderia sp. PAMC 26561 791 1 0 1795043 species 1 0 416344 species Burkholderia sp. KJ006 1150 species 0 640512 1 1610 Burkholderia sp. CCGE1003 709 Burkholderia sp. PAMC 28687 species 0 1795874 1 species 0 1740163 1 939 Burkholderia sp. Bp7605 0 1740162 species 1 1031 Burkholderia sp. Bp5365 1591 Burkholderia sp. RPE67 species 758796 0 1 0 1678678 species 1 1335 Burkholderia sp. HB1 1 0 1468409 species Burkholderia sp. 2002721687 1076 1 species 0 1097668 Burkholderia sp. YI23 1708 1 0 337 species Burkholderia glumae 2858 Burkholderia gladioli 3311 1 species 0 28095 7 species group 0 111527 9123 1 1637831 0 species Burkholderia sp. MSMB617WGS 678 1 species 1637837 0 Burkholderia sp. MSMB0266 664 species 0 1637841 1 870 Burkholderia sp. MSMB0852 741 Burkholderia mallei species 0 13373 1 1 species 28450 0 Burkholderia pseudomallei 2457 1 species 0 57975 Burkholderia thailandensis 2241 Burkholderia oklahomensis 1472 1 species 0 342113 1 genus 0 1822464 12 371 17757 Paraburkholderia species 0 75105 1 2380 Paraburkholderia caribensis Paraburkholderia phymatum 1726 1 species 148447 0 1131 no rank 2615204 0 1 species 0 1926494 1 1131 Paraburkholderia sp. SOS3 1988 Paraburkholderia aromaticivorans species 0 2026199 1 1 species 252970 0 Paraburkholderia phenoliruptrix 1337 261302 0 species 1 1541 Paraburkholderia phytofirmans 1585 Paraburkholderia terrae 311230 0 species 1 species 0 134537 1 1109 Paraburkholderia fungorum 1269 Paraburkholderia sprentiae 948107 0 species 1 1 species 0 169430 Paraburkholderia hospita 1698 Paraburkholderia xenovorans 1622 1 0 36873 species 5 0 48736 genus 1 Ralstonia 14420 261 329 0 species 1 3630 Ralstonia pickettii 1 species 0 105219 Ralstonia mannitolilytica 2077 6607 Ralstonia solanacearum 0 305 species 1 1845 Ralstonia insidiosa 0 190721 species 1 Cupriavidus 592 17227 9 1 genus 0 106589 Cupriavidus basilensis 1713 1 0 68895 species 1 367825 0 species Cupriavidus sp. USMAA1020 2181 4583 no rank 0 2640874 2 1 0 876364 species Cupriavidus sp. USMAA2-4 2435 1 0 1389192 species Cupriavidus sp. USMAHM13 2148 Cupriavidus gilardii 1858 1 species 0 82541 1752 Cupriavidus metallidurans 119219 0 species 1 1 species 248026 0 Cupriavidus pinatubonensis 1469 species 0 106590 1 3079 Cupriavidus necator 79412 1131 Comamonadaceae family 1 0 80864 59 Variovorax 10397 261 5 genus 1 34072 0 species 436515 0 1 1940 Variovorax boronicumulans 3345 2 663243 0 no rank 1 species 0 1795631 Variovorax sp. PAMC 28711 1233 1 species 0 2126319 Variovorax sp. PMC12 2112 1 species 34073 0 Variovorax paradoxus 4851 11048 441 Delftia 0 80865 genus 1 5 5238 2 2613839 0 no rank Delftia sp. HK171 2502 1 species 0 1920191 Delftia sp. Cs1-4 2736 1 species 0 742013 0 80866 species 1 2722 Delftia acidovorans 2647 Delftia tsuruhatensis 0 180282 species 1 7143 482 Rhodoferax genus 1 0 28065 5 Rhodoferax saidenbachensis 1070 1 0 1484693 species 1677 Rhodoferax ferrireducens 0 192843 species 1 1 species 1842727 0 Rhodoferax koreense 1970 Rhodoferax antarcticus 1944 1 species 0 81479 4361 97 Hydrogenophaga 0 47420 genus 1 4 species 0 1763535 1 1066 Hydrogenophaga crassostreae 3198 no rank 0 2610897 2 Hydrogenophaga sp. PBC 1829 1 0 795665 species 1369 Hydrogenophaga sp. RAC07 species 1842537 0 1 1182 7 Simplicispira genus 1 0 352450 2 1 species 2109915 0 Simplicispira sp. SC1-8 1175 2085 2490452 0 genus 2 1 species 0 1458425 Comamonadaceae bacterium A1 805 1 0 1458426 species Comamonadaceae bacterium B1 1280 genus 1 0 52972 3 3184 23 Polaromonas 1 0 216465 species Polaromonas naphthalenivorans 1699 1462 2638319 0 no rank 1 1 species 0 296591 Polaromonas sp. JS666 1462 41 1539 Melaminivora 1649468 0 1 genus 2 1498 1 2641902 0 no rank 2109913 0 species 1 1498 Melaminivora sp. SC2-9 Limnohabitans 13 1654 3 0 665874 1 genus 1641 no rank 0 2626134 2 1 species 0 1678128 Limnohabitans sp. 63ED37-2 828 Limnohabitans sp. 103DPR2 813 1 1678129 0 species Alicycliphilus 9 2598 2 1 genus 0 201096 1 species 0 179636 Alicycliphilus denitrificans 2589 Ramlibacter 27 4028 2 1 genus 174951 0 0 94132 species 1 4001 Ramlibacter tataouinensis Candidatus Symbiobacter 748 10 2 1436289 0 genus 1 Candidatus Symbiobacter mobilis 738 1 0 1436290 species Acidovorax 558 13441 9 1 genus 12916 0 0 80869 species 1 1703 Acidovorax citrulli 6484 4 2684926 0 no rank 1434 Acidovorax sp. JS42 0 232721 species 1 species 0 1858609 1 1274 Acidovorax sp. T1 Acidovorax sp. RAC01 1996 1 1842533 0 species 0 358220 species 1 1780 Acidovorax sp. KKS102 0 721785 species 1 1293 Acidovorax ebreus species 0 553814 1 1174 Acidovorax sp. NA3 species 0 80867 1 2229 Acidovorax avenae 0 238749 1 genus 2 15 1560 Diaphorobacter 0 1546149 species 1 1545 Diaphorobacter polyhydroxybutyrativorans Comamonas 7444 83 4 0 283 genus 1 1652 Comamonas serinivorans 0 1082851 species 1 0 225992 species 1 1433 Comamonas kerstersii 0 285 species 1 4276 Comamonas testosteroni 1684 genus 2678886 0 1 Melaminivora sp. SC2-7 1684 1 0 2116657 species 3 219181 0 genus 1 Ottowia 2801 15 1 species 2109914 0 Ottowia sp. KADR8-3 1634 1152 1 no rank 0 2645081 0 1658672 species 1 1152 Ottowia sp. oral taxon 894 4 1384 Verminephrobacter 1 genus 364316 0 2 1 species 0 364317 Verminephrobacter eiseniae 1380 548 60936 Alcaligenaceae 1 family 0 506 44 3 genus 1 0 290425 Advenella 2266 3 Advenella kashmirensis 1087 1 species 0 310575 1 0 302406 species Advenella mimigardefordensis 1176 1225 31 Taylorella genus 1 29574 0 3 1 29575 0 species Taylorella equigenitalis 491 Taylorella asinigenitalis 703 1 84590 0 species 2 0 1100891 genus 1 Paenalcaligenes 392 1 1 0 643674 species Paenalcaligenes hominis 391 49 1771 Castellaniella 359336 0 1 genus 2 species 75697 0 1 1722 Castellaniella defragrans 6 1 genus 0 222 Achromobacter 768 20473 Achromobacter spanius 3298 1 217203 0 species species 0 85698 1 8269 Achromobacter xylosoxidans species 0 217204 1 1910 Achromobacter insolitus Achromobacter denitrificans 4198 1 species 0 32002 2030 no rank 2626865 0 1 1 0 1758194 species Achromobacter sp. AONIH1 2030 773 10 Pusillimonas 0 305976 genus 1 2 763 0 2640016 no rank 1 1 0 1007105 species Pusillimonas sp. T7-7 763 1 genus 517 0 17 883 26882 Bordetella 1437 Bordetella genomosp. 13 0 463040 species 1 0 1331258 species 1 2037 Bordetella pseudohinzii 1627 Bordetella flabilis 0 463014 species 1 0 518 species 1 2907 Bordetella bronchiseptica 0 35814 species 1 762 Bordetella holmesii Bordetella trematum 2293 1 0 123899 species 0 463024 species 1 1619 Bordetella genomosp. 6 Bordetella petrii 1600 1 species 0 94624 species 1416803 0 1 1271 Bordetella genomosp. 9 1 0 463025 species Bordetella bronchialis 1847 species 0 1416806 1 1544 Bordetella genomosp. 8 2006 Bordetella hinzii species 0 103855 1 1133 Bordetella pertussis species 520 0 1 1 2630031 0 no rank 1471 1 species 0 1697043 Bordetella sp. H567 1471 907 Bordetella avium species 0 521 1 species 519 0 1 1538 Bordetella parapertussis genus 1 0 1921582 2 1836 74 Orrella Orrella dioscoreae 1762 1 species 0 1851544 2548 14 Alcaligenes genus 1 0 507 2 Alcaligenes faecalis 2534 1 species 0 511 2 0 1472344 genus 1 Basilea 849 1 1 0 1472345 species Basilea psittacipulmonis 848 90243 0 genus 1 2 1373 3 Oligella species 0 90245 1 1370 Oligella urethralis 29 1 family 0 75682 Oxalobacteraceae 334 39870 1 genus 0 29580 7 141 9512 Janthinobacterium 5416 no rank 2610881 0 4 Janthinobacterium sp. B9-8 739 1 species 0 1236179 Janthinobacterium sp. 1_2014MBL_MicDiv 2289 1 species 0 1644131 species 0 375286 1 699 Janthinobacterium sp. Marseille species 1938606 0 1 1689 Janthinobacterium sp. LM6 1 0 368607 species Janthinobacterium svalbardensis 2117 1838 Janthinobacterium agaricidamnosum 0 55508 species 1 Oxalobacter 5 1183 2 1 genus 0 846 1178 Oxalobacter formigenes 0 847 species 1 Massilia 186 9835 6 0 149698 1 genus Massilia putida 1822 1 1141883 0 species 1 species 0 2045208 Massilia sp. B2 1423 4183 no rank 2609279 0 2 Massilia sp. WG5 2168 1 species 0 1707785 Massilia sp. NR 4-1 2015 1 species 0 1678028 1 species 0 2072590 Massilia sp. ZMN-3 2221 6 genus 1 0 963 Herbaspirillum 10965 354 species 0 964 1 2802 Herbaspirillum seropedicae 0 80842 species 1 1836 Herbaspirillum rubrisubalbicans Herbaspirillum frisingense 2557 1 species 0 92645 1416 no rank 0 2624150 1 species 0 2025949 1 1416 Herbaspirillum sp. meg3 0 341045 species 1 2000 Herbaspirillum hiltneri 8 1605 Herminiimonas 1 genus 0 303379 3 1 species 0 204773 Herminiimonas arsenicoxydans 827 0 1809410 species 1 770 Herminiimonas arsenitoxidans 0 202907 1 genus 4 126 6436 Collimonas 2469 Collimonas fungivorans species 0 158899 1 0 279113 species 1 1683 Collimonas pratensis 1 0 279058 species Collimonas arenae 2158 19784 17 224471 0 no rank 1 species 0 413882 [Polyangium] brachysporum 1870 0 65047 1 genus 2 71 2261 Mitsuaria 2190 1 2648776 0 no rank species 1658665 0 1 2190 Mitsuaria sp. 7 40 2847 Thiomonas 0 32012 1 genus 2 1 926 0 species Thiomonas intermedia 2807 2 0 318147 1 genus Paucibacter 37 1555 1518 2642959 0 no rank 1 1518 Paucibacter sp. KCTC 42545 1768242 0 species 1 2 genus 1 0 316612 Methylibium 1697 58 1639 Methylibium petroleiphilum 0 105560 species 1 63 1800 Leptothrix 1 genus 0 88 2 1737 Leptothrix cholodnii species 34029 0 1 Rubrivivax 93 3044 2 28067 0 1 genus 2951 Rubrivivax gelatinosus species 28068 0 1 75 2259 Rhizobacter 0 212743 1 genus 2 species 0 946333 1 2184 Rhizobacter gummiphilus Roseateles 70 2451 2 1 genus 93681 0 2381 Roseateles depolymerans species 76731 0 1 4462 11 0 119066 no rank 88 1 genus 1301080 0 88 Candidatus Nasuia deltocephalinicola species 0 1160784 1 33055 0 genus 1 6 2443 22 Kinetoplastibacterium 1 0 994695 species Candidatus Kinetoplastibacterium galatii 600 Kinetoplastibacterium blastocrithidii 383 1 233181 0 species 0 994692 species 1 586 Candidatus Kinetoplastibacterium desouzaii 244 Candidatus Kinetoplastibacterium oncopeltii species 0 994696 1 1 0 33056 species Candidatus Kinetoplastibacterium crithidii 608 2 1 genus 0 327159 Candidatus Accumulibacter 29 1600 1571 Candidatus Accumulibacter phosphatis species 327160 0 1 1 0 1381133 genus 282 1 species 0 669502 Candidatus Profftella armatura 282 49 genus 189384 0 1 0 189385 species 1 49 Candidatus Tremblaya princeps 202 subphylum 0 68525 269065 Epsilonproteobacteria 210 94292 73 1 class 29547 0 3040 91389 Campylobacterales 0 213849 1 order 66 8967 19 Helicobacteraceae 72293 0 family 1 15 30 8084 Helicobacter 1 genus 0 209 12 Helicobacter cetorum 832 1 0 138563 species 1 species 0 37372 Helicobacter bilis 503 442 Helicobacter typhlonius 0 76936 species 1 333 1 0 2593540 no rank 0 222136 species 1 333 Helicobacter sp. MIT 01-6242 species 212 0 1 271 Helicobacter acinonychis 1 32025 0 species Helicobacter hepaticus 637 0 1591088 species 1 447 Helicobacter himalayensis 0 217 species 1 370 Helicobacter mustelae 3633 Helicobacter pylori species 210 0 1 species 213 0 1 436 Helicobacter cinaedi Helicobacter felis 150 1 species 0 214 2 864 Wolinella 0 843 1 genus 2 1 0 844 species Wolinella succinogenes 862 2771472 0 family 5 3760 3 0 265570 1 genus Sulfurovum 14 2735 1735 1 no rank 2646778 0 species 0 387093 1 1735 Sulfurovum sp. NBC37-1 species 0 206403 1 986 Sulfurovum lithotrophicum Nitratifractor 10 1025 2 1 genus 0 269260 1015 Nitratifractor salsuginis 0 269261 species 1 1 family 0 72294 41 4411 73235 Campylobacteraceae 5 2321108 0 no rank 9142 genus 1 0 28196 3 4641 74 Arcobacter 1957 Arcobacter nitrofigilis species 0 28199 1 Arcobacter butzleri 2610 1 0 28197 species 2340 1 0 2321187 genus 2340 Arcobacter sp. LPB0137 0 1850254 species 1 1 no rank 2321207 0 2161 Arcobacter sp. L 2161 1 0 944547 species Campylobacter 817 53405 26 0 194 1 genus 801 Campylobacter hominis species 0 76517 1 0 28898 species 1 379 Campylobacter helveticus Campylobacter avium 630 1 0 522485 species 0 195 species 1 21932 Campylobacter coli Campylobacter ureolyticus 1310 1 827 0 species species 0 824 1 693 Campylobacter gracilis 953 Campylobacter volucris 1031542 0 species 1 1 species 0 488546 Campylobacter peloridis 1038 Campylobacter insulaenigrae 1219 1 260714 0 species species 0 198 1 953 Campylobacter hyointestinalis Campylobacter cuniculorum 723 1 374106 0 species 1 0 75658 species Campylobacter lanienae 872 no rank 2593542 0 4 2864 Campylobacter sp. RM8964 719 1 species 0 1660074 Campylobacter sp. RM12175 547 1 0 1660076 species 1 0 1500960 species Campylobacter sp. RM16704 976 0 1660073 species 1 622 Campylobacter sp. RM6137 1 0 197 species Campylobacter jejuni 6499 0 206 species 1 1847 Campylobacter sputorum 1 0 201 species Campylobacter lari 2383 0 200 species 1 420 Campylobacter curvus 1053 Campylobacter subantarcticus 0 497724 species 1 species 0 199 1 1292 Campylobacter concisus 1 1244531 0 species Campylobacter iguaniorum 909 Campylobacter fetus 1506 1 0 196 species 2312 Campylobacter pinnipediorum 1965231 0 species 1 61 6277 Sulfurospirillum 1 genus 0 57665 9 2853 3 0 2618290 no rank 0 1581011 species 1 1317 Sulfurospirillum sp. UCH001 573 Sulfurospirillum sp. SL2-1 species 0 1986224 1 0 220622 species 1 963 Sulfurospirillum sp. JPD-1 1 0 65553 species Sulfurospirillum deleyianum 590 Sulfurospirillum cavolei 448 1 species 366522 0 1 0 44674 species Sulfurospirillum barnesii 752 1 0 194424 species Sulfurospirillum halorespirans 560 1013 Sulfurospirillum multivorans 66821 0 species 1 2387 4 family 0 2771471 genus 0 286130 1 563 Sulfuricurvum kujiense 563 1 species 148813 0 Sulfurimonas 1824 3 3 genus 1 0 202746 Sulfurimonas autotrophica 975 1 202747 0 species 1 0 39766 species Sulfurimonas denitrificans 846 Nautiliales 3 2693 6 235899 0 1 order 1268 2 0 2795691 family 5 1268 Nitratiruptor 1 genus 0 269258 2 2624044 0 no rank 1 1263 Nitratiruptor sp. SB155-2 1263 1 0 387092 species Nautiliaceae 1 1422 3 1 family 0 224467 2 1 genus 0 191291 Nautilia 4 1421 1 species 244787 0 Nautilia profundicola 1417 class 1 0 28221 129 174773 457 Deltaproteobacteria Desulfarculales 3156 27 4 0 453227 order 1 Desulfarculaceae 116 3129 3 1 family 0 453228 3013 28 Desulfarculus 453229 0 genus 1 2 1 453230 0 species Desulfarculus baarsii 2985 0 69541 order 1 24 39216 417 Desulfuromonadales Desulfuromonadaceae 13262 190 9 0 213421 family 1 5062 38 Desulfuromonas genus 1 890 0 3 0 2614637 no rank 1 2750 1 species 0 1823759 Desulfuromonas sp. DDH964 2750 1 species 1603606 0 Desulfuromonas soudanensis 2274 474 8010 Pelobacter 1 genus 18 0 5 1324 1 no rank 0 2620299 0 1842532 species 1 1324 Pelobacter sp. SFB93 2563 Pelobacter propionicus 0 29543 species 1 1609 Pelobacter acetylenicus 0 29542 species 1 0 19 species 1 2040 Pelobacter carbinolicus 25537 213 Geobacteraceae family 1 0 213422 14 Geoalkalibacter 2182 11 2 genus 1 0 392332 Geoalkalibacter subterraneus 2171 1 483547 0 species 1 genus 0 28231 11 395 23142 Geobacter 2126 Geobacter pickeringii species 345632 0 1 1495 Geobacter daltonii species 0 1203471 1 species 0 28232 1 2083 Geobacter metallireducens Geobacter bemidjiensis 2192 1 species 0 225194 species 0 35554 1 1815 Geobacter sulfurreducens 1848 Geobacter uraniireducens 0 351604 species 1 Geobacter lovleyi 2218 1 0 313985 species no rank 2627627 0 2 7035 1 0 443144 species Geobacter sp. M21 3721 3314 Geobacter sp. M18 0 443143 species 1 species 0 1340425 1 1935 Geobacter anodireducens 1 order 0 29 38 827 58104 Myxococcales 8 0 80812 suborder 10847 23 1983 Sandaracinaceae 1 family 0 1055686 3 1 genus 0 1055688 2 20 1960 Sandaracinus species 927083 0 1 1940 Sandaracinus amylolyticus 0 49 1 family 5 55 8864 Polyangiaceae 2 50 0 1 genus Chondromyces 4 2257 Chondromyces crocatus 2253 1 species 0 52 2 39643 0 genus 1 Sorangium 6552 63 1 species 0 56 Sorangium cellulosum 6489 43199 26 80811 0 suborder Archangiaceae 230 12008 9 1 family 0 39 genus 1 42 0 2 2760 27 Cystobacter 1 species 0 43 Cystobacter fuscus 2733 Archangium 27 3524 2 1 genus 47 0 Archangium gephyra 3497 1 species 0 48 0 40 genus 1 2 2401 19 Stigmatella 2382 Stigmatella aurantiaca 0 41 species 1 Melittangium 3093 25 2 genus 1 0 44 Melittangium boletus 3068 1 0 83453 species 3 family 1 0 1524213 Vulgatibacteraceae 1581 18 Vulgatibacter 46 1563 2 1 genus 0 1524214 1517 Vulgatibacter incomptus species 0 1391653 1 0 1524215 family 1 5 9260 97 Anaeromyxobacteraceae 4 161492 0 1 genus Anaeromyxobacter 150 9163 2 2620896 0 no rank 4899 Anaeromyxobacter sp. K 2340 1 species 0 447217 2559 Anaeromyxobacter sp. Fw109-5 species 404589 0 1 161493 0 species 1 4114 Anaeromyxobacter dehalogenans 0 31 family 1 9 20350 136 Myxococcaceae 3 genus 1 0 83461 Corallococcus 6661 109 species 0 184914 1 3337 Corallococcus coralloides Myxococcus macrosporus 3215 1 0 35 species 13553 507 Myxococcus genus 1 0 32 5 1 0 83455 species Myxococcus stipitatus 2491 Myxococcus hansupus 2600 1 species 1297742 0 2338 Myxococcus xanthus 0 34 species 1 0 33 species 1 5617 Myxococcus fulvus suborder 0 224462 3 3231 Kofleriaceae 27 3231 3 0 224464 1 family 40 3204 Haliangium 1 genus 162027 0 2 0 80816 species 1 3164 Haliangium ochraceum 0 213113 1 order 6 3 1856 Desulfurellales 0 117942 family 1 5 1853 25 Desulfurellaceae Hippea 849 7 2 0 84404 genus 1 842 Hippea maritima species 0 84405 1 Desulfurella 979 7 2 0 33001 genus 1 0 33002 species 1 972 Desulfurella acetivorans Desulfovibrionales 585 52414 26 1 order 0 213115 261 45926 Desulfovibrionaceae 0 194924 1 family 18 0 2035811 genus 1 4 9079 106 Pseudodesulfovibrio 0 1716143 species 1 3521 Pseudodesulfovibrio indicus 2968 Pseudodesulfovibrio aespoeensis species 182210 0 1 2484 Pseudodesulfovibrio profundus species 0 57320 1 2256 genus 0 2582840 1 2256 Desulfovibrio africanus 0 873 species 1 1 0 2794998 genus 1775 1775 Desulfovibrio salexigens 0 880 species 1 9 872 0 genus 1 Desulfovibrio 31383 265 Desulfovibrio piger 5561 1 0 901 species 1 species 876 0 Desulfovibrio desulfuricans 5525 881 0 species 1 7750 Desulfovibrio vulgaris 1 no rank 2593640 0 2004 2004 Desulfovibrio sp. G11 0 631220 species 1 1 species 0 58180 Desulfovibrio alaskensis 2582 Desulfovibrio fairfieldensis 3851 1 0 44742 species Desulfovibrio magneticus 2971 1 0 184917 species Candidatus Desulfovibrio trichonymphae 874 1 species 0 1725232 2 41707 0 genus 1 Lawsonia 1172 6 0 29546 species 1 1166 Lawsonia intracellularis 4950 64 Desulfomicrobiaceae 0 213116 family 1 4 3 genus 1 0 898 Desulfomicrobium 4886 49 Desulfomicrobium baculatum 2572 1 899 0 species species 0 132132 1 2265 Desulfomicrobium orale 953 1 Desulfohalobiaceae 0 213117 family 1 3 2 genus 1 0 45662 Desulfohalobium 952 8 944 Desulfohalobium retbaense 45663 0 species 1 0 213118 1 order 20 133 14840 Desulfobacterales 1 family 0 213121 9 31 6180 Desulfobulbaceae Desulfotalea 1 1185 2 1 genus 109168 0 1184 Desulfotalea psychrophila 84980 0 species 1 0 893 genus 1 2 2015 22 Desulfobulbus species 0 1986146 1 1993 Desulfobulbus sp. ORNL 3 1135 Desulfocapsa 1 genus 0 53318 2 65555 0 species 1 1132 Desulfocapsa sulfexigens 2 1 genus 427922 0 Desulfurivibrio 17 1814 species 0 427923 1 1797 Desulfurivibrio alkaliphilus 1 family 213119 0 10 39 8527 Desulfobacteraceae Desulfobacterium 1261 13 2 0 2295 genus 1 1 species 2296 0 Desulfobacterium autotrophicum 1248 Desulfococcus 22 4066 3 0 896 1 genus Desulfococcus multivorans 2119 1 species 0 897 1925 Desulfococcus oleovorans species 0 181663 1 Desulfobacula 1312 2 2 genus 1 0 28222 1310 Desulfobacula toluolica species 0 28223 1 1 genus 218207 0 2 3 1849 Desulfatibacillum 1 259354 0 species Desulfatibacillum alkenivorans 1846 10 0 213462 1 order Syntrophobacterales 66 4730 1 family 0 213465 3 12 1603 Syntrophobacteraceae Syntrophobacter 23 1591 2 29526 0 1 genus species 119484 0 1 1568 Syntrophobacter fumaroxidans 6 0 213468 family 1 Syntrophaceae 3061 14 2357 0 genus 1 1059 1 species 2358 0 Desulfomonile tiedjei 1059 2 genus 1 0 43773 Syntrophus 1269 7 1 species 0 316277 Syntrophus aciditrophicus 1262 3 719 Desulfobacca 1 genus 0 60892 2 1 species 60893 0 Desulfobacca acetoxidans 716 200918 0 phylum 43 24908 43 1 class 0 188708 Thermotogae 42 24908 Thermotogales 16097 11 28 order 1 0 2419 Thermotogaceae 25 8354 17 0 188709 1 family Thermotoga 6608 113 11 genus 1 2335 0 2584 2631113 0 no rank 4 Thermotoga sp. Cell2 509 1 1157947 0 species 493 Thermotoga sp. 2812B 1157948 0 species 1 Thermotoga sp. RQ2 534 1 species 0 126740 Thermotoga sp. RQ7 1048 1 0 126738 species 1 0 2336 species Thermotoga maritima 375 1 species 0 93929 Thermotoga petrophila 727 1 species 0 1508419 Thermotoga caldifontis 609 0 93930 species 1 630 Thermotoga naphthophila species 2337 0 1 1019 Thermotoga neapolitana 551 Thermotoga profunda species 1508420 0 1 Pseudothermotoga 1721 56 5 genus 1 1643951 0 1 0 177758 species Pseudothermotoga lettingae 440 367 Pseudothermotoga thermarum 119394 0 species 1 0 57487 species 1 392 Pseudothermotoga hypogea Pseudothermotoga elfii 466 1 species 0 38322 10 1 family 0 1643950 Fervidobacteriaceae 35 7732 Fervidobacterium 2869 10 4 0 2422 genus 1 1 2423 0 species Fervidobacterium islandicum 728 Fervidobacterium pennivorans 1085 1 0 93466 species 0 2424 species 1 1046 Fervidobacterium nodosum 5 2420 0 genus 1 Thermosipho 4828 8 2676525 0 no rank 2 2022 Thermosipho sp. 1063 1001 1 species 1462747 0 1 0 1437364 species Thermosipho sp. 1070 1021 Thermosipho melanesiensis 1007 1 0 46541 species 1791 Thermosipho africanus species 0 2421 1 1643947 0 1 order 7 9 6817 Petrotogales 6808 family 1643949 0 6 1 genus 0 1511648 1129 species 0 1006576 1 1129 Defluviitoga tunisiensis 28236 0 1 genus 2 6 917 Petrotoga Petrotoga mobilis 911 1 species 0 69499 3 0 160798 genus 1 Marinitoga 4762 19 1 species 0 149715 Marinitoga piezophila 2320 1 no rank 2640159 0 2423 1 species 0 1545835 Marinitoga sp. 1137 2423 Kosmotogales 1952 9 7 1643946 0 order 1 family 1 1643948 0 6 1943 10 Kosmotogaceae 2 0 1184396 1 genus Mesotoga 5 522 0 1184387 species 1 517 Mesotoga prima 1 1411 Kosmotoga 0 651456 1 genus 3 1 0 1330330 species Kosmotoga pacifica 868 651457 0 species 1 542 Kosmotoga olearia 9577 10 phylum 0 508458 10 1 class 649775 0 Synergistia 58 9577 48 9519 Synergistales 0 649776 1 order 9 9471 1442 Synergistaceae 0 649777 family 1 8 6 908 Thermanaerovibrio 0 81461 1 genus 2 1 81462 0 species Thermanaerovibrio acidaminovorans 902 508459 0 1 genus 2 39 5608 Cloacibacillus 1 species 0 1197717 Cloacibacillus porcorum 5569 1 genus 49894 0 420 1 species 97477 0 Acetomicrobium mobile 420 1 genus 81466 0 644 Aminobacterium colombiense 644 1 0 81468 species 449 1 336260 0 genus 449 Thermovirga lienii 0 336261 species 1 577 2 0 2138240 phylum 577 2 class 0 2138243 2138246 0 order 2 577 0 2138247 1 family 2 1 577 Coprothermobacteraceae 0 68335 genus 1 576 1 species 0 35786 Coprothermobacter proteolyticus 576 11257112 0 1783272 clade 1736 10037392 370 Firmicutes 0 1239 phylum 1 728 21 44982 Tissierellia 1 class 0 1737404 19 920 43211 Tissierellales 1 order 0 1737405 16 Peptoniphilaceae 37576 10345 12 family 1 1570339 0 Parvimonas 40 3633 2 1 genus 0 543311 3593 Parvimonas micra 0 33033 species 1 24 3448 Finegoldia 0 150022 1 genus 2 Finegoldia magna 3424 1 0 1260 species Murdochiella 4 12142 2 0 1161127 1 genus species 1852373 0 1 12138 Murdochiella vaginalis 2 genus 1 0 162289 Peptoniphilus 3200 17 no rank 2637196 0 1 3183 3183 Peptoniphilus sp. ING2-D1G 0 1912856 species 1 1 genus 0 165779 3 8 4808 Anaerococcus 1 species 0 1870984 Anaerococcus mediterraneensis 2198 1 species 0 33034 Anaerococcus prevotii 2602 3 1 family 0 2042895 Gottschalkiaceae 18 4715 Gottschalkia 11 4697 2 0 1505664 1 genus Gottschalkia acidurici 4686 1 0 1556 species 1750 2 0 1737407 no rank 40 1750 Ezakiella 1 genus 0 1582879 2 Ezakiella massiliensis 1710 1 0 1852374 species 2427 2 no rank 0 33974 0 1930845 1 genus 2 49 2427 Ndongobacter species 0 1871025 1 2378 Ndongobacter massiliensis 225172 105 Negativicutes 0 909932 class 1 31 2080 53099 Veillonellales 1 order 0 1843489 11 10 31977 0 1 family Veillonellaceae 2643 51019 7829 34 Veillonella 0 29465 genus 1 3 Veillonella rodentium 3627 1 species 248315 0 Veillonella parvula 4168 1 0 29466 species 2 1 genus 0 909928 Negativicoccus 18 4530 1 species 1702287 0 Negativicoccus massiliensis 4512 Megasphaera 579 24286 2 1 genus 0 906 Megasphaera elsdenii 23707 1 0 907 species 2 1 genus 0 39948 Dialister 26 11731 1 0 39950 species Dialister pneumosintes 11705 106660 124 Selenomonadales order 1 909929 0 14 100017 401 Selenomonadaceae family 1 0 1843491 9 Megamonas 2 5115 2 1 genus 0 158846 1 species 0 158847 Megamonas hypermegale 5113 1 genus 970 0 6 265 94501 Selenomonas Selenomonas sputigena 21875 1 69823 0 species 32285 Selenomonas ruminantium 0 971 species 1 40076 3 no rank 2637378 0 1 species 0 713030 Selenomonas sp. oral taxon 136 13363 Selenomonas sp. oral taxon 920 12803 1 species 0 1884263 1 species 0 712538 Selenomonas sp. oral taxon 478 13910 0 1843490 family 1 4 6519 4 Sporomusaceae genus 1 0 365348 3 6515 34 Pelosinus 2960 1 no rank 2629460 0 1 0 484770 species Pelosinus sp. UFO1 2960 species 365349 0 1 3521 Pelosinus fermentans 65308 58 Acidaminococcales order 1 0 1843488 5 66 65250 Acidaminococcaceae 1 family 909930 0 4 94 65184 Acidaminococcus 1 genus 0 904 3 Acidaminococcus fermentans 11838 1 0 905 species 187327 0 species 1 53252 Acidaminococcus intestini class 1 0 526524 11 34720 2 Erysipelotrichia 10 0 526525 order 1 Erysipelotrichales 34718 24 9 128827 0 1 family Erysipelotrichaceae 147 34694 0 1729679 1 genus 2 22 7221 Faecalibaculum Faecalibaculum rodentium 7199 1 0 1702221 species 1 genus 0 1647 3 42 4063 Erysipelothrix 2275 Erysipelothrix larvae species 0 1514105 1 Erysipelothrix rhusiopathiae 1746 1 species 0 1648 no rank 544447 0 1 16633 16633 Erysipelotrichaceae bacterium I46 0 1834207 species 1 2 0 191303 1 genus Turicibacter 25 6630 no rank 2638206 0 1 6605 1 species 0 1712675 Turicibacter sp. H121 6605 5 1676648 0 class 1 Limnochordia 2683 16 4 1 order 0 1676649 Limnochordales 35 2667 Limnochordaceae 2632 8 3 family 1 1676650 0 genus 1 0 1676651 2 2624 26 Limnochorda 1 0 1555112 species Limnochorda pilosa 2598 no rank 0 84086 1 2173 species 0 243899 1 2173 endosymbiont 'TC1' of Trimyema compressum 1 class 0 91061 434 720 955825 Bacilli 164 1 order 186826 0 Lactobacillales 7140 464225 92 58428 Enterococcaceae 0 81852 1 family 19 12 0 1350 genus 1 Enterococcus 48891 2619 Enterococcus wangshanyuanii 1882 1 species 0 2005703 1 0 37734 species Enterococcus casseliflavus 926 1 0 53345 species Enterococcus durans 2271 3368 no rank 0 2608891 3 Enterococcus sp. CR-Ec1 1039 1 0 2057791 species 1343 Enterococcus sp. FDAARGOS_375 species 0 2060307 1 986 Enterococcus sp. FDAARGOS_163 2060306 0 species 1 0 1354 species 1 2366 Enterococcus hirae 1 species 0 417368 Enterococcus thailandicus 1370 1 0 1351 species Enterococcus faecalis 9204 species 0 53346 1 2063 Enterococcus mundtii 22822 Enterococcus faecium 0 1352 species 1 genus 1 0 51668 2 3482 2 Tetragenococcus 0 51669 species 1 3480 Tetragenococcus halophilus 1 33969 0 genus 2155 2155 Melissococcus plutonius species 0 33970 1 21 3808 Vagococcus 1 genus 0 2737 3 1 species 0 633807 Vagococcus penaei 1676 2111 Vagococcus teuberi 519472 0 species 1 49 family 1 0 1300 Streptococcaceae 223576 4740 84 10960 Lactococcus 1 genus 0 1357 5 1 species 0 1364 Lactococcus piscium 1454 0 1358 species 1 6447 Lactococcus lactis species 0 1366 1 1160 Lactococcus raffinolactis 1815 Lactococcus garvieae 0 1363 species 1 207876 6406 Streptococcus genus 1 1301 0 43 Streptococcus halotolerans 1514 1 species 0 1814128 1025 Streptococcus pseudopneumoniae 257758 0 species 1 Streptococcus parasanguinis 1442 1 species 0 1318 1 species 0 1346 Streptococcus iniae 2749 0 1888195 species 1 1198 Streptococcus himalayensis 1 species 0 1307 Streptococcus suis 36496 Streptococcus mitis 3909 1 0 28037 species 1 species 0 400065 Streptococcus merionis 1497 species 0 315405 1 3269 Streptococcus gallolyticus 7919 7 no rank 2608887 0 1301 Streptococcus sp. 'group B' 0 1319 species 1 species 0 1839799 1 1486 Streptococcus sp. FDAARGOS_192 801 Streptococcus sp. NPS 308 0 1902136 species 1 1 species 0 1156431 Streptococcus sp. I-G2 1400 0 1156433 species 1 1265 Streptococcus sp. I-P16 1 0 712633 species Streptococcus sp. oral taxon 431 932 734 Streptococcus sp. A12 species 0 1759399 1 8361 Streptococcus lutetiensis species 0 150055 1 1 species 0 1335 Streptococcus equinus 975 Streptococcus pneumoniae 2929 1 0 1313 species 2911 Streptococcus pyogenes 0 1314 species 1 species 0 1305 1 1587 Streptococcus sanguinis 1 0 45634 species Streptococcus cristatus 1344 1 0 1326 species Streptococcus acidominimus 4661 species 0 1349 1 1184 Streptococcus uberis 4434 Streptococcus salivarius species 0 1304 1 1 0 1308 species Streptococcus thermophilus 4592 1 species 0 1303 Streptococcus oralis 2647 Streptococcus agalactiae 16505 1 0 1311 species species 0 1348 1 1850 Streptococcus parauberis 0 119603 species group 2 3464 species 0 1336 1 1901 Streptococcus equi 0 1334 species 1 1563 Streptococcus dysgalactiae 671232 0 species group 3 58939 0 1328 species 1 28752 Streptococcus anginosus 28089 Streptococcus constellatus 0 76860 species 1 Streptococcus intermedius 2098 1 0 1338 species 1 species 0 197614 Streptococcus pasteurianus 5258 1 0 1811193 species Streptococcus pantholopis 1002 species 1302 0 1 3557 Streptococcus gordonii species 0 102684 1 8799 Streptococcus infantarius 1039 Streptococcus marmotae species 0 1825069 1 Streptococcus mutans 2049 1 1309 0 species 0 82348 species 1 1489 Streptococcus pluranimalium 1 species 59310 0 Streptococcus macedonicus 876 family 1 0 186828 10 11588 26 Carnobacteriaceae 2115 1 genus 191769 0 2115 1 0 2632303 no rank species 1911586 0 1 2115 Marinilactibacillus sp. 15R 2821 1 Jeotgalibaca 0 1470540 genus 1 3 1 2621505 0 no rank 1778 0 1903686 species 1 1778 Jeotgalibaca sp. PTS2502 Jeotgalibaca dankookensis 1042 1 species 0 708126 Carnobacterium 6626 102 5 0 2747 genus 1 Carnobacterium maltaromaticum 1776 1 2751 0 species 2 257487 0 no rank 3187 Carnobacterium sp. 17-4 1892 1 208596 0 species 1295 Carnobacterium sp. CP1 species 0 1564681 1 147709 0 species 1 1561 Carnobacterium inhibens 58 0 33958 1 family Lactobacillaceae 392 140415 1578 0 genus 1 16 28149 1706 Lactobacillus 3217 no rank 0 2620435 4 712 Lactobacillus sp. CBA3605 species 0 2099788 1 Lactobacillus sp. CBA3606 937 1 species 0 2099789 563 Lactobacillus sp. D1501 0 2108362 species 1 1 0 1545702 species Lactobacillus sp. wkB8 1005 3707 Lactobacillus johnsonii species 0 33959 1 1 species 0 109790 Lactobacillus jensenii 949 Lactobacillus amylolyticus 1315 1 species 0 83683 1 species 0 1604 Lactobacillus amylovorus 3900 1 species 0 1600 Lactobacillus acetotolerans 853 1 0 1596 species Lactobacillus gasseri 2371 Lactobacillus helveticus 2106 1 0 1587 species species 0 267818 1 1031 Lactobacillus kefiranofaciens Lactobacillus delbrueckii 3357 1 1584 0 species Lactobacillus acidophilus 2500 1 species 1579 0 1137 Lactobacillus gallinarum species 0 52242 1 3 genus 0 2767893 4461 Lactobacillus buchneri 1334 1 0 1581 species 1675 Lactobacillus curieae 0 1138822 species 1 1452 Lactobacillus parabuchneri species 0 152331 1 2 2767889 0 genus 1908 Lactobacillus coryniformis 1120 1 species 1610 0 species 0 375175 1 788 Lactobacillus backii 8246 6 genus 0 2767879 1187 Lactobacillus ginsenosidimutans 0 1007676 species 1 1 0 1074467 species Lactobacillus heilongjiangensis 1117 Lactobacillus farciminis 1323 1 species 0 1612 Lactobacillus allii 1465 1 0 1847728 species 1 0 392416 species Lactobacillus crustorum 1632 Lactobacillus alimentarius 1522 1 species 0 1602 55318 genus 2767887 0 4 0 1623 species 1 47586 Lactobacillus ruminis 0 89059 species 1 1257 Lactobacillus acidipiscis 1707 Lactobacillus agilis 1601 0 species 1 1624 0 species 1 4768 Lactobacillus salivarius genus 0 2767876 1 3308 Lactobacillus amylophilus 3308 1 0 1603 species 2267 genus 2767885 0 2 848 Lactobacillus curvatus species 0 28038 1 1 0 1599 species Lactobacillus sakei 1419 1019 2767892 0 genus 1 Lactobacillus paracollinoides 1019 1 0 240427 species 1253 0 genus 1 6 6534 18 Pediococcus 1066 Pediococcus damnosus species 0 51663 1 species 1255 0 1 2357 Pediococcus pentosaceus 1 species group 1670797 0 1301 Pediococcus acidilactici 1301 1 species 0 1254 620 Pediococcus inopinatus species 114090 0 1 Pediococcus claussenii 1172 1 0 187452 species genus 0 2767886 3 2600 Lactobacillus koreensis 611 1 species 0 637971 Lactobacillus zymae 788 1 0 267363 species 0 1580 species 1 1201 Lactobacillus brevis 1108 1 genus 0 2767890 Lactobacillus hokkaidonensis 1108 1 0 1193095 species 3 genus 2742598 0 5544 1 0 1613 species Lactobacillus fermentum 1253 1 97478 0 species Lactobacillus mucosae 1718 1 species 0 1598 Lactobacillus reuteri 2573 3 0 2759736 genus 12675 6665 Lactobacillus casei 0 1582 species 1 1674 Lactobacillus rhamnosus species 0 47715 1 1 species 0 1597 Lactobacillus paracasei 4336 941 2767877 0 genus 1 Lactobacillus kunkeei 941 1 0 148814 species 3 2767842 0 genus 4219 1390 Lactobacillus pentosus species 1589 0 1 533 Lactobacillus paraplantarum 0 60520 species 1 2296 Lactobacillus plantarum species 0 1590 1 1726 2 genus 2767881 0 1 species 0 53444 Lactobacillus lindneri 933 Lactobacillus sanfranciscensis 793 1 0 1625 species 23 13777 Leuconostocaceae 0 81850 1 family 18 Leuconostoc 81 8641 9 0 1243 1 genus species 0 1252 1 893 Leuconostoc carnosum 1088 Leuconostoc garlicum 0 255248 species 1 677 Leuconostoc lactis 0 1246 species 1 1068 1 no rank 0 2685106 Leuconostoc sp. C2 1068 1 0 979982 species Leuconostoc kimchii 1328 1 0 136609 species 1644 Leuconostoc mesenteroides 0 1245 species 1 Leuconostoc gelidum 1205 1 species 0 1244 657 Leuconostoc citreum 0 33964 species 1 6 1 genus 46255 0 Weissella 95 4063 Weissella ceti 765 1 species 759620 0 species 137591 0 1 705 Weissella cibaria 0 1631871 species 1 884 Weissella jogaejeotgali 1 species 0 1249 Weissella paramesenteroides 778 0 165096 species 1 836 Weissella koreensis 2 46254 0 1 genus Oenococcus 2 1050 1 0 1247 species Oenococcus oeni 1048 Aerococcaceae 7787 13 8 family 1 0 186827 genus 1 0 1375 7 7774 104 Aerococcus Aerococcus sanguinicola 962 1 species 0 119206 1640 Aerococcus christensenii 0 87541 species 1 Aerococcus viridans 1002 1 0 1377 species 1 species 0 51665 Aerococcus urinaeequi 1733 species 0 1376 1 1201 Aerococcus urinae 1 species 128944 0 Aerococcus urinaehominis 1132 no rank 263855 0 1 1514 1514 Lactobacillales bacterium species 1993866 0 1 269 order 1 0 1385 Bacillales 490880 1131 32417 105 Planococcaceae 0 186818 family 1 27 genus 1 0 157226 2 1648 6 Jeotgalibacillus 1508404 0 species 1 1642 Jeotgalibacillus malaysiensis genus 1 1569 0 5 8086 45 Sporosarcina 1571 0 species 1 3727 Sporosarcina ureae 2932 no rank 2647733 0 2 1 0 1930546 species Sporosarcina sp. P37 1423 Sporosarcina sp. P33 1509 1 0 1930764 species species 0 1476 1 1382 Sporosarcina psychrophila 14577 195 Planococcus 0 1372 genus 1 12 Planococcus sp. L10.15 800 1 1302659 0 species species 0 1598147 1 1259 Planococcus faecalis species 0 200991 1 1394 Planococcus rifietoensis 0 192421 species 1 2564 Planococcus maritimus 1374 0 species 1 1719 Planococcus kocurii Planococcus donghaensis 914 1 species 414778 0 2 0 2662419 no rank 2279 species 0 1526927 1 869 Planococcus sp. PAMC 21323 species 2058136 0 1 1410 Planococcus sp. MB-3u-03 species 0 161360 1 1229 Planococcus antarcticus 1 species 1038856 0 Planococcus plakortidis 1094 0 1215089 species 1 1130 Planococcus halocryophilus 2 genus 1 0 1649 Kurthia 1854 13 1841 2644826 0 no rank 1 1 species 0 1750719 Kurthia sp. 11kri321 1841 3 genus 1 0 648800 Solibacillus 4652 11 1 2637870 0 no rank 1597 1597 Solibacillus sp. R5-41 species 0 2048654 1 3044 Solibacillus silvestris species 0 76853 1 Rummeliibacillus 2 1495 2 0 648802 1 genus 1 0 241244 species Rummeliibacillus stabekisii 1493 0 186817 1 family 120 877 222193 Bacillaceae genus 2675234 0 5 8544 Bacillus krulwichiae 1899 1 species 0 199441 300825 0 species 1 1512 Bacillus lehensis 1 0 79885 species Bacillus pseudofirmus 1530 Bacillus clausii 2243 1 species 79880 0 species 86665 0 1 1360 Bacillus halodurans 3 1 genus 0 45667 Halobacillus 3 2273 1 402384 0 species Halobacillus mangrovi 1104 1166 Halobacillus halophilus species 0 1570 1 2 0 459532 genus 1 Terribacillus 1491 14 1477 Terribacillus aidingensis species 0 586416 1 5 1 genus 0 400634 Lysinibacillus 106 12172 2036 Lysinibacillus fusiformis 0 28031 species 1 1 0 1145276 species Lysinibacillus varians 2558 Lysinibacillus sphaericus 5147 1 0 1421 species 2325 1 0 2636778 no rank 2325 Lysinibacillus sp. YS11 species 0 2072025 1 4936 2 2675229 0 genus Bacillus simplex 3626 1 species 0 1478 0 264697 species 1 1310 Bacillus muralis 1204 16902 Geobacillus 0 129337 1 genus 15 5249 0 2642459 no rank 6 1 0 550542 species Geobacillus sp. Y412MC52 647 1 species 581103 0 Geobacillus sp. Y4.1MC1 1354 458 Geobacillus sp. GHH01 species 0 1233873 1 Geobacillus sp. Y412MC61 676 1 species 0 544556 1 species 0 691437 Geobacillus sp. C56-T3 739 1375 Geobacillus sp. WCH70 0 471223 species 1 4907 species group 1505648 0 4 1 species 0 33941 Geobacillus thermoleovorans 2443 1197 Geobacillus lituanicus 0 169283 species 1 1 species 0 33938 Geobacillus thermocatenulatus 842 species 0 1462 1 425 Geobacillus kaustophilus 1 0 129338 species Geobacillus subterraneus 1588 1463 Geobacillus stearothermophilus 0 1422 species 1 species 0 33940 1 1331 Geobacillus thermodenitrificans 0 1921421 species 1 1160 Geobacillus genomosp. 3 135764 5438 Bacillus genus 1 0 1386 58 0 1404 species 1 4781 Bacillus megaterium 1 0 1408 species Bacillus pumilus 5740 1 632773 0 species Bacillus beveridgei 1431 1792192 0 species group 1 1498 1 293387 0 species Bacillus altitudinis 1498 species 0 86664 1 1402 Bacillus flexus Bacillus weihaiensis 1732 1 0 1547283 species 1178537 0 species 1 1274 Bacillus xiamenensis 49491 0 86661 species group 10 1 1396 0 species Bacillus cereus 16207 no rank 0 2750818 3 5724 Bacillus sp. FDAARGOS_235 2122 1 0 1839798 species species 0 1892404 1 1888 Bacillus sp. ABP14 Bacillus sp. HBCD-sjtu 1714 1 0 2053832 species 15316 Bacillus thuringiensis 0 1428 species 1 1663 Bacillus bombysepticus species 0 658666 1 Bacillus anthracis 1158 1 1392 0 species 1 0 580165 species Bacillus cytotoxicus 2727 1 0 155322 species Bacillus toyonensis 1320 5376 Bacillus mycoides 0 1405 species 1 2229 Bacillus cohnii species 33932 0 1 2811 Bacillus safensis 0 561879 species 1 Bacillus coagulans 4652 1 0 1398 species 1 0 79881 species Bacillus gibsonii 224 0 135735 species 1 2284 Bacillus endophyticus 1777 Bacillus methanolicus 0 1471 species 1 Bacillus cellulosilyticus 2003 1 species 1413 0 species 0 1664069 1 1991 Bacillus glycinifermentans 16135 185979 0 no rank 19 1 0 1574141 species Bacillus sp. YP1 268 1536 Bacillus sp. WP8 0 756828 species 1 1 0 563169 species Bacillus sp. SJ-10 521 species 0 1127744 1 561 Bacillus sp. JS 1 species 0 2009331 Bacillus sp. MD-5 613 Bacillus sp. (in: Bacteria) 194 1 species 0 1409 1 species 1774743 0 Bacillus sp. SDLI1 1014 226 Bacillus sp. BH072 0 1570330 species 1 Bacillus sp. 275 469 1 species 0 1941347 0 1565991 species 1 1830 Bacillus sp. X1(2014) species 0 1446792 1 516 Bacillus sp. Pc3 Bacillus sp. 1NLA3E 1829 1 0 666686 species Bacillus sp. H15-1 1153 1 0 1856406 species 1145 Bacillus sp. OxB-1 98228 0 species 1 Bacillus sp. LM 4-2 200 1 0 1628753 species 1 0 2026248 species Bacillus sp. 1s-1 1147 Bacillus sp. IHB B 7164 1565 1 species 0 1827146 species 0 2049935 1 235 Bacillus sp. Lzh-5 0 1837130 species 1 1113 Bacillus sp. FJAT-14266 1 species 1479 0 Bacillus smithii 1409 1799 Bacillus horikoshii species 0 79883 1 21806 0 653685 species group 9 1729 Bacillus licheniformis 0 1402 species 1 1972 Bacillus paralicheniformis 1648923 0 species 1 7611 Bacillus subtilis 1423 0 species 1 119858 0 species 1 1403 Bacillus sonorensis 297 Bacillus vallismortis species 0 72361 1 1452 0 species 1 1629 Bacillus atrophaeus species subgroup 1938374 0 3 7165 2630 Bacillus velezensis 0 492670 species 1 1 species 0 1390 Bacillus amyloliquefaciens 3517 1 species 0 659243 Bacillus siamensis 1018 0 324767 species 1 2092 Bacillus infantis Bacillus aryabhattai 1765 1 0 412384 species Lentibacillus 2 1396 2 1 genus 175304 0 species 0 1472767 1 1394 Lentibacillus amyloliquefaciens 0 29331 genus 1 2 2021 3 Amphibacillus 2018 Amphibacillus xylanus species 0 1449 1 3 0 1329200 1 genus Fictibacillus 23 6829 Fictibacillus arsenicus 5087 1 species 255247 0 1 0 1221500 species Fictibacillus phosphorivorans 1719 1055323 0 genus 1 1558 Aeribacillus pallidus 1558 1 species 0 33936 Salimicrobium 2 1346 2 1 genus 0 351195 1344 Salimicrobium jeotgali 1230341 0 species 1 Parageobacillus 6 1816 2 0 1906945 1 genus 1 species 0 1426 Parageobacillus thermoglucosidasius 1810 3871 2675230 0 genus 2 1 species 0 859143 Bacillus kochii 1675 1 0 665099 species Bacillus oceanisediminis 2196 Virgibacillus 9597 95 7 genus 1 0 84406 Virgibacillus necropolis 1593 1 0 163877 species 3208 no rank 2620237 0 2 1 0 403957 species Virgibacillus sp. SK37 1354 1854 Virgibacillus sp. 6R species 0 1911587 1 Virgibacillus pantothenticus 1646 1 species 0 1473 1546 Virgibacillus halodenitrificans 1482 0 species 1 Virgibacillus phasianinus 1509 1 species 2017483 0 33 7086 Anoxybacillus 1 genus 0 150247 6 2037 Anoxybacillus flavithermus 0 33934 species 1 species 198467 0 1 1222 Anoxybacillus gonensis 2470 0 2639704 no rank 2 1266 Anoxybacillus sp. B7M1 species 0 1490057 1 1 0 1490052 species Anoxybacillus sp. B2M1 1204 Anoxybacillus amylolyticus 1324 1 0 294699 species Oceanobacillus 7 3714 2 0 182709 1 genus 3707 Oceanobacillus iheyensis species 0 182710 1 0 90964 1 family 42 2074 74903 Staphylococcaceae 35 5079 Macrococcus 0 69965 1 genus 4 1 species 0 1855823 Macrococcus canis 1380 Macrococcus caseolyticus 2007 1 species 69966 0 1 2619255 0 no rank 1657 1657 Macrococcus sp. IME1552 species 1898474 0 1 Auricoccucs 1327 3 2 0 2005363 genus 1 1 species 0 1849491 Auricoccus indicus 1324 5 1886 Salinicoccus 0 45669 1 genus 2 Salinicoccus halodurans 1881 1 species 0 407035 0 1279 1 genus 33 1160 64537 Staphylococcus Staphylococcus warneri 1792 1 species 0 1292 Staphylococcus capitis 1597 1 0 29388 species 1562 Staphylococcus carnosus 0 1281 species 1 1101 Staphylococcus pettenkoferi species 0 170573 1 1 0 29384 species Staphylococcus kloosii 1524 Staphylococcus haemolyticus 2335 1 0 1283 species Staphylococcus piscifermentans 1438 1 species 70258 0 988 Staphylococcus hyicus species 0 1284 1 1678 Staphylococcus hominis species 0 1290 1 1 1282 0 species Staphylococcus epidermidis 3137 283734 0 species 1 1898 Staphylococcus pseudintermedius 0 46127 species 1 1549 Staphylococcus felis 1564 Staphylococcus schleiferi species 1295 0 1 1 species 0 1280 Staphylococcus aureus 7549 1 species 0 1296 Staphylococcus sciuri 2009 1441 Staphylococcus nepalensis 0 214473 species 1 0 1286 species 1 1989 Staphylococcus simulans 0 155085 species 1 855 Staphylococcus lutrae 246432 0 species 1 2845 Staphylococcus equorum Staphylococcus simiae 2006 1 species 308354 0 Staphylococcus succinus 1505 1 species 0 61015 Staphylococcus argenteus 2045 1 0 985002 species species 28035 0 1 1726 Staphylococcus lugdunensis 1 1294 0 species Staphylococcus muscae 869 1 no rank 91994 0 1897 1897 Staphylococcus sp. AntiMn-1 0 1715860 species 1 Staphylococcus pasteuri 3639 1 species 0 45972 species 0 70255 1 2115 Staphylococcus condimenti 2017 Staphylococcus cohnii 0 29382 species 1 1839 Staphylococcus stepanovicii 0 643214 species 1 Staphylococcus saprophyticus 1534 1 0 29385 species 1288 0 species 1 2466 Staphylococcus xylosus Staphylococcus agnetis 868 1 0 985762 species 46 0 186822 family 1 Paenibacillaceae 121972 303 genus 1 0 44249 36 106838 2033 Paenibacillus 0 1178515 species 1 1313 Paenibacillus swuensis 1 species 0 1616788 Paenibacillus bovis 2625 species 0 162209 1 2218 Paenibacillus naphthalenovorans 3161 Paenibacillus yonginensis species 0 1462996 1 2072 Paenibacillus kribbensis species 0 172713 1 1 0 44251 species Paenibacillus durus 4896 2784 Paenibacillus sabinae 0 365617 species 1 Paenibacillus graminis 3710 1 189425 0 species Paenibacillus mucilaginosus 4824 1 species 0 61624 Paenibacillus borealis 4497 1 species 0 160799 6591 Paenibacillus polymyxa species 0 1406 1 1 species 0 1126833 Paenibacillus beijingensis 2639 1 species group 0 2044880 4774 species 0 483937 1 4774 Paenibacillus riograndensis Paenibacillus odorifer 2004 1 species 0 189426 no rank 185978 0 13 35732 Paenibacillus sp. Y412MC10 2464 1 species 0 481743 1 0 1870819 species Paenibacillus sp. BIHB4019 2409 1 species 0 1536773 Paenibacillus sp. FSL R7-0331 3497 1 0 324057 species Paenibacillus sp. JDR-2 2656 0 1536772 species 1 3999 Paenibacillus sp. FSL R7-0273 0 1536775 species 1 2221 Paenibacillus sp. FSL H7-0737 species 0 1536774 1 3077 Paenibacillus sp. FSL H7-0357 species 1536771 0 1 3816 Paenibacillus sp. FSL R5-0912 1 species 0 1536770 Paenibacillus sp. FSL R5-0345 1877 Paenibacillus sp. lzh-N1 1844 1 species 0 2069255 2361 Paenibacillus sp. 32O-W species 0 1695218 1 species 1536769 0 1 4199 Paenibacillus sp. FSL P4-0081 1 0 1566358 species Paenibacillus sp. IHBB 10380 1312 Paenibacillus larvae 2376 1 0 1464 species 0 1870820 species 1 3303 Paenibacillus ihbetae species 0 1763538 1 1952 Paenibacillus crassostreae Paenibacillus stellifer 3627 1 0 169760 species species 0 159743 1 1647 Paenibacillus terrae 3555 Paenibacillus donghaensis 0 414771 species 1 1 species 0 59893 Paenibacillus peoriae 1721 species 528191 0 1 2784 Paenibacillus xylanexedens no rank 85151 0 3 3698 Aneurinibacillus 3698 22 3 genus 1 0 55079 1 2642329 0 no rank 1920 1 1450761 0 species Aneurinibacillus sp. XH2 1920 1756 Aneurinibacillus soli 0 1500254 species 1 genus 1 76632 0 2 3800 24 Thermobacillus Thermobacillus composti 3776 1 0 377615 species genus 1 0 55080 4 7333 45 Brevibacillus 3340 Brevibacillus laterosporus 1465 0 species 1 Brevibacillus formosus 1522 1 species 0 54913 Brevibacillus brevis 2426 1 0 1393 species no rank 539002 0 9 9762 6726 7 no rank 539742 0 1 genus 0 33986 7 154 6726 Exiguobacterium species 0 132920 1 1225 Exiguobacterium antarcticum Exiguobacterium sibiricum 959 1 332410 0 species 2644629 0 no rank 4 4388 1 species 0 1224749 Exiguobacterium sp. ZWU0009 1300 1 species 0 1399115 Exiguobacterium sp. MH3 993 Exiguobacterium sp. U13-1 1378 1 species 0 1849031 species 0 360911 1 717 Exiguobacterium sp. AT1b 3036 0 539738 no rank 2 genus 1 1378 0 2 3036 7 Gemella 1 no rank 0 2624949 3029 1785995 0 species 1 3029 Gemella sp. oral taxon 928 Listeriaceae 31 12600 9 1 family 0 186820 2 1 genus 0 2755 Brochothrix 5 1190 species 0 2756 1 1185 Brochothrix thermosphacta 1 genus 1637 0 6 138 11379 Listeria 4137 Listeria monocytogenes 0 1639 species 1 1546 Listeria welshimeri species 0 1643 1 0 1638 species 1 2144 Listeria ivanovii Listeria seeligeri 1565 1 species 0 1640 Listeria innocua 1849 1 0 1642 species Alicyclobacillaceae 49 11796 9 0 186823 1 family 34 3221 Alicyclobacillus 0 29330 1 genus 2 3187 Alicyclobacillus acidocaldarius species 0 405212 1 3 432330 0 genus 1 Tumebacillus 5135 79 Tumebacillus avium 3166 1 1903704 0 species 1890 Tumebacillus algifaecis species 0 1214604 1 3 0 1129704 genus 1 Kyrpidia 3391 40 2228 Kyrpidia sp. EA-1 species 2055160 0 1 1123 Kyrpidia tusciae 0 33943 species 1 4 186824 0 family 1 Thermoactinomycetaceae 1726 7 2 0 1677050 genus 1 Novibacillus 1699 65 species 0 1471761 1 1634 Novibacillus thermophilus 20 Laceyella 292635 0 genus 1 2 0 186821 1 family Sporolactobacillaceae 1 2380 2379 1 0 663587 no rank 85683 0 species 1 2379 [Bacillus] selenitireducens 0 186801 1 class 224 574 8769040 Clostridia 1 order 0 186802 165 26518 8701710 Clostridiales 24 4492 Symbiobacteriaceae 1 family 0 543349 3 2 1 genus 0 2733 Symbiobacterium 20 4468 1 species 0 2734 Symbiobacterium thermophilum 4448 41 family 1 0 31979 Clostridiaceae 285056 997 Mordavella 365 1 1981033 0 genus 1 genus 0 1485 30 1583 264469 Clostridium Clostridium sporogenes 5812 1 species 0 1509 Clostridium estertheticum 5127 1 species 0 238834 0 1497 species 1 3641 Clostridium formicaceticum 1 species 0 1492 Clostridium butyricum 10887 Clostridium perfringens 12110 1 0 1502 species 1 0 1520 species Clostridium beijerinckii 11395 1 1542 0 species Clostridium novyi 5227 7620 Clostridium cellulovorans species 0 1493 1 1 species 1519 0 Clostridium tyrobutyricum 4922 species 1488 0 1 4571 Clostridium acetobutylicum Clostridium aceticum 3362 1 species 0 84022 Clostridium kluyveri 6974 1 1534 0 species 1 0 1548 species Clostridium scatologenes 7659 1 0 46867 species Clostridium chauvoei 5824 Clostridium argentinense 6742 1 species 0 29341 1 species 1494 0 Clostridium cochlearium 5922 1 species 1538 0 Clostridium ljungdahlii 4807 1513 0 species 1 9835 Clostridium tetani Clostridium taeniosporum 6661 1 species 0 394958 11778 Clostridium baratii 0 1561 species 1 39372 0 2614128 no rank 2 1 species 0 755731 Clostridium sp. BNL1100 6607 Clostridium sp. SY8519 32765 1 species 0 1042156 Clostridium pasteurianum 10599 1 0 1501 species 9734 Clostridium saccharoperbutylacetonicum 36745 0 species 1 4966 Clostridium autoethanogenum 0 84023 species 1 0 1216932 species 1 7087 Clostridium bornimense Clostridium saccharobutylicum 7406 1 0 169679 species 35554 Clostridium botulinum species 0 1491 1 species 0 217159 1 7292 Clostridium carboxidivorans Candidatus Arthromitus 71 7758 4 0 49082 1 genus 7687 3 no rank 2638829 0 2533 Candidatus Arthromitus sp. SFB-mouse-NL species 1508644 0 1 2299 Candidatus Arthromitus sp. SFB-mouse 0 49118 species 1 2855 Candidatus Arthromitus sp. SFB-rat-Yit species 0 1041504 1 Geosporobacter 28 5037 2 0 390805 1 genus species 0 1424294 1 5009 Geosporobacter ferrireducens 24 6430 Alkaliphilus 1 genus 0 114627 3 Alkaliphilus metalliredigens 3163 1 species 0 208226 Alkaliphilus oremlandii 3243 1 species 0 461876 Heliobacteriaceae 4834 14 3 0 31984 family 1 Heliobacterium 4820 86 2 genus 1 2697 0 4734 Heliobacterium modesticaldum species 0 35701 1 Christensenellaceae 46 46531 3 0 990719 1 family 857 46485 Christensenella 0 990721 1 genus 2 species 0 1805714 1 45628 Christensenella massiliensis 10 40945 Oscillospiraceae 0 216572 1 family 3 2 genus 1 459786 0 Oscillibacter 40935 105 Oscillibacter valericigenes 40830 1 species 351091 0 699 2578565 Ruminococcaceae 0 541000 1 family 13 1 genus 0 946234 2 184 135925 Flavonifractor 135741 Flavonifractor plautii species 0 292800 1 6059 no rank 0 552397 1 0 29343 species 1 6059 [Clostridium] cellulosi Ruminococcus 189 438004 3 1 genus 1263 0 419901 Ruminococcus bicirculans species 1160721 0 1 17914 Ruminococcus albus species 0 1264 1 1969322 1691 Faecalibacterium 0 216851 genus 1 2 1967631 Faecalibacterium prausnitzii species 853 0 1 Ethanoligenens 14914 44 2 0 253238 genus 1 Ethanoligenens harbinense 14870 1 253239 0 species 0 1890281 genus 1 7 Herbivorax 13635 1 no rank 2305133 0 species 0 1572656 1 13635 Ruminococcaceae bacterium CPB6 family 1 0 186806 5 26180 62 Eubacteriaceae 1 genus 0 33951 2 5 2747 Acetobacterium 1 species 0 33952 Acetobacterium woodii 2742 genus 1 1730 0 2 23371 1382 Eubacterium Eubacterium limosum 21989 1 species 0 1736 4 68298 0 family 1 Syntrophomonadaceae 1939 4 Syntrophothermus 2 789 2 1 genus 0 129001 787 Syntrophothermus lipocalidus species 86170 0 1 genus 862 0 1 1146 Syntrophomonas wolfei 1146 1 0 863 species family 1 0 186803 27 5134295 2746 Lachnospiraceae Herbinix 11331 12 2 1663717 0 genus 1 11319 Herbinix luporum 0 1679721 species 1 1 0 2719231 genus 56304 [Clostridium] saccharolyticum 56304 1 0 84030 species 195368 1 genus 2569097 0 195368 [Eubacterium] hallii 0 39488 species 1 2730026 1 genus 28050 0 1 0 39485 species [Eubacterium] eligens 2730026 257366 257 Anaerostipes genus 1 0 207244 2 257109 Anaerostipes hadrus 0 649756 species 1 118074 1 genus 2719313 0 1 0 208479 species [Clostridium] bolteae 118074 3 572511 0 1 genus Blautia 257 182694 1 no rank 0 2648079 62878 Blautia sp. YL58 62878 1 species 0 1796616 1 species 0 1322 Blautia hansenii 119559 2 1 genus 0 698776 Cellulosilyticum 23 9346 9323 Cellulosilyticum lentocellum 0 29360 species 1 514360 no rank 186928 0 2 484572 [Eubacterium] rectale 0 39491 species 1 Lachnospiraceae bacterium oral taxon 500 29788 1 0 712991 species 4 1 genus 0 1506553 Lachnoclostridium 851 149821 Lachnoclostridium phocaeense 80356 1 species 1871021 0 species 0 66219 1 16522 Lachnoclostridium phytofermentans 0 2608895 no rank 1 52092 Lachnoclostridium sp. YL32 52092 1 0 1834196 species 2 0 841 1 genus Roseburia 102 855818 855716 Roseburia hominis 0 301301 species 1 Butyrivibrio 43522 53 3 830 0 genus 1 Butyrivibrio proteoclasticus 21008 1 0 43305 species 1 species 0 185008 Butyrivibrio hungatei 22461 4 7519 Anaerotignum 0 2039240 1 genus 2 1 0 28446 species Anaerotignum propionicum 7515 1 family 0 186804 11 657 186979 Peptostreptococcaceae 8675 5 Paeniclostridium genus 1 1849828 0 2 8670 Paeniclostridium sordellii 0 1505 species 1 2 genus 1 0 1870884 Clostridioides 164762 399 Clostridioides difficile 164363 1 0 1496 species 3864 no rank 0 1411023 1 1 species 0 2081703 Peptostreptococcaceae bacterium oral taxon 929 3864 3349 0 1481960 genus 1 1 species 1731 0 Peptoclostridium acidaminophilum 3349 3046 11 Acetoanaerobium genus 1 186831 0 2 Acetoanaerobium sticklandii 3035 1 species 1511 0 genus 1 0 44259 2 2626 21 Filifactor 2605 Filifactor alocis 0 143361 species 1 Peptococcaceae 555 53410 29 1 family 0 186807 11395 97 Desulfitobacterium 0 36853 genus 1 5 Desulfitobacterium metallireducens 1992 1 142877 0 species 2012 Desulfitobacterium dichloroeliminans species 0 233055 1 1998 Desulfitobacterium dehalogenans species 0 36854 1 Desulfitobacterium hafniense 5296 1 species 49338 0 4 79206 0 1 genus Desulfosporosinus 74 6129 Desulfosporosinus orientis 1976 1 species 0 1563 1 species 0 885581 Desulfosporosinus acidiphilus 2091 1988 Desulfosporosinus meridiei species 0 79209 1 Syntrophobotulus 2467 6 2 genus 1 51196 0 51197 0 species 1 2461 Syntrophobotulus glycolicus 2282740 0 genus 1 2524 1 102134 0 species Desulfotomaculum gibsoniae 2524 0 278993 genus 1 2 1900 1 Thermincola 1 0 863643 species Thermincola potens 1899 0 1562 genus 1 5 9560 92 Desulfotomaculum 1 0 1833852 species Desulfotomaculum ferrireducens 3106 1 0 59610 species Desulfotomaculum reducens 1571 Desulfotomaculum ruminis 2621 1 species 0 1564 Desulfotomaculum nigrificans 2170 1 species 0 1565 0 56112 1 genus 4 134 11487 Dehalobacter Dehalobacter restrictus 2727 1 species 0 55583 8626 no rank 0 2635733 2 1 1131462 0 species Dehalobacter sp. CF 4313 species 0 1147129 1 4313 Dehalobacter sp. DCA genus 2282742 0 1 2185 2185 Desulfotomaculum acetoxidans species 0 58138 1 genus 1 0 471826 2 1530 16 Candidatus Desulforudis 0 471827 species 1 1514 Candidatus Desulforudis audaxviator 2 1 genus 51514 0 Dehalobacterium 18 3678 0 51515 species 1 3660 Dehalobacterium formicoaceticum 538999 0 no rank 10 239942 0 2717089 genus 1 113833 1 0 2086584 species Mordavella sp. Marseille-P3756 113833 114827 959 Intestinimonas genus 1 0 1392389 2 1 species 1297617 0 Intestinimonas butyriciproducens 113868 Clostridiales Family XVII. Incertae Sedis 21 2742 3 0 539000 1 family Thermaerobacter 2721 16 2 0 73918 genus 1 species 0 73919 1 2705 Thermaerobacter marianensis 4 0 543314 family 1 Clostridiales Family XIII. Incertae Sedis 8540 39 0 143393 species 1 4510 [Eubacterium] sulci 3991 27 Mogibacterium 86331 0 genus 1 2 3964 Mogibacterium diversum 114527 0 species 1 12 2304686 0 family 72024 genus 2304691 0 1 3380 species 0 1510 1 3380 [Clostridium] stercorarium 13793 3 2304692 0 genus 4706 Ruminiclostridium thermocellum 0 1515 species 1 4444 Herbivorax saccincola 0 1677857 species 1 4643 [Clostridium] clariflavum 0 288965 species 1 1 2304693 0 genus 4951 [Clostridium] thermosuccinogenes 4951 1 species 84032 0 22 5444 Mageeibacillus 1 genus 0 1637257 2 Mageeibacillus indolicus 5422 1 species 0 884684 2 genus 1 0 1508657 Ruminiclostridium 6854 555 6299 [Clostridium] cellulolyticum 0 1521 species 1 Fastidiosipila 3 3146 2 1 genus 0 236752 Fastidiosipila sanguinis 3143 1 species 0 236753 34456 1 2305130 0 no rank 34456 Ruminiclostridium sp. KB18 0 1834198 species 1 0 53433 order 1 12 9885 6 Halanaerobiales 0 972 family 1 6 5934 23 Halanaerobiaceae 2 0 32636 1 genus Halothermothrix 5 1687 Halothermothrix orenii 1682 1 0 31909 species 3 genus 1 0 2330 Halanaerobium 4224 47 2331 0 species 1 2156 Halanaerobium praevalens 2021 Halanaerobium hydrogeniformans 0 656519 species 1 Halobacteroidaceae 26 3945 5 53434 0 1 family 2 2045 Acetohalobium 1 genus 0 28186 2 28187 0 species 1 2043 Acetohalobium arabaticum genus 1 0 42417 2 1874 9 Halobacteroides 0 42422 species 1 1865 Halobacteroides halobius 3 order 0 2770089 2836 family 2770092 0 1 1604 1604 0 499228 genus 1 499229 0 species 1 1604 Tepidanaerobacter acetatoxydans 1232 2 2770093 0 family Thermosediminibacter 1232 3 2 genus 1 0 291988 Thermosediminibacter oceani 1229 1 0 291990 species 123 52382 Thermoanaerobacterales 1 order 68295 0 39 13 1 family 0 543371 Thermoanaerobacterales Family III. Incertae Sedis 65 22805 21 7036 Thermoanaerobacterium 1 genus 0 28895 3 4374 Thermoanaerobacterium thermosaccharolyticum species 0 1517 1 1 species 0 29329 Thermoanaerobacterium xylanolyticum 2641 1 genus 0 44000 9 288 15704 Caldicellulosiruptor 1 species 55205 0 Caldicellulosiruptor owensensis 1677 Caldicellulosiruptor kronotskyensis 1946 1 0 413889 species 1927 Caldicellulosiruptor hydrothermalis species 413888 0 1 0 44001 species 1 1775 Caldicellulosiruptor saccharolyticus 1 31899 0 species Caldicellulosiruptor bescii 1967 species 52766 0 1 1908 Caldicellulosiruptor lactoaceticus Caldicellulosiruptor obsidiansis 2389 1 0 717609 species Caldicellulosiruptor kristjanssonii 1827 1 species 0 52765 24 1767 Thermoanaerobacterales Family IV. Incertae Sedis 0 543372 1 family 3 Mahella 1743 36 2 genus 1 252965 0 species 0 252966 1 1707 Mahella australiensis Thermodesulfobiaceae 6 801 3 227387 0 1 family 2 0 227388 1 genus Thermodesulfobium 1 795 Thermodesulfobium narugense 794 1 species 0 184064 37 26886 Thermoanaerobacteraceae 1 family 0 186814 19 1385 14 Thermacetogenium 0 140458 genus 1 2 1371 Thermacetogenium phaeum species 0 85874 1 genus 249529 0 1 1514 1 0 911092 species Caldanaerobacter subterraneus 1514 genus 1 0 129957 2 1675 1 Carboxydothermus 1674 Carboxydothermus hydrogenoformans 0 129958 species 1 19123 865 Thermoanaerobacter genus 1 0 1754 9 2799 Thermoanaerobacter kivui 0 2325 species 1 1 species 0 108150 Thermoanaerobacter italicus 2035 Thermoanaerobacter mathranii 1810 1 species 583357 0 2636821 0 no rank 2 4198 Thermoanaerobacter sp. X514 2076 1 0 399726 species Thermoanaerobacter sp. X513 2122 1 species 0 573062 0 496866 species 1 2377 Thermoanaerobacter pseudethanolicus 2371 Thermoanaerobacter brockii species 0 29323 1 Thermoanaerobacter wiegelii 2668 1 46354 0 species 3152 42857 0 no rank 4 2 1 genus 0 44260 Moorella 5 2012 2007 Moorella thermoacetica 0 1525 species 1 11 1140 Ammonifex 42837 0 1 genus 2 Ammonifex degensii 1129 1 species 0 42838 1653 8 Natranaerobiales order 1 0 485256 4 485255 0 1 family 3 7 1645 Natranaerobiaceae 2 375928 0 1 genus Natranaerobius 22 1638 1 0 375929 species Natranaerobius thermophilus 1616 5 phylum 67819 0 1039 0 1663419 1 class 5 2 1039 Fimbriimonadia 1037 3 Fimbriimonadales 0 1663425 order 1 4 Fimbriimonadaceae 1034 9 3 family 1 1663426 0 1025 15 Fimbriimonas 0 1005038 genus 1 2 1010 Fimbriimonas ginsengisoli species 0 1005039 1 phylum 1 0 200795 47 22102 2 Chloroflexi 8 1 class 189775 0 Thermomicrobia 41 1963 3 0 189776 1 order Thermomicrobiales 12 494 Thermomicrobiaceae 482 3 2 0 189777 family 1 1 genus 499 0 479 Thermomicrobium roseum 479 1 500 0 species 4 subclass 0 85000 1428 32 1428 Sphaerobacterales 1 order 0 85001 4 0 255728 suborder 3 1396 Sphaerobacteraceae 31 1396 3 1 family 0 85002 2 0 2056 genus 1 Sphaerobacter 1365 9 Sphaerobacter thermophilus 1356 1 0 2057 species 9 301297 0 class 1 Dehalococcoidia 6110 156 0 670486 1 genus 3 41 2051 Dehalogenimonas 1 species 0 1839801 Dehalogenimonas formicexedens 990 Dehalogenimonas lykanthroporepellens 1020 1 0 552810 species 5 order 1 1202465 0 Dehalococcoidales 3903 6 4 family 1 0 1202464 Dehalococcoidaceae 3897 5 Dehalococcoides 4 3892 3 1 genus 0 61434 species 61435 0 1 2817 Dehalococcoides mccartyi 0 237581 no rank 1 1071 1 species 0 1522671 Dehalococcoides sp. UCH007 1071 5 475962 0 1 class Caldilineae 11 1716 7 1705 Caldilineales 1 order 0 475963 4 Caldilineaceae 12 1698 3 1 family 0 475964 Caldilinea 1686 5 2 genus 1 0 233191 0 133453 species 1 1681 Caldilinea aerophila class 1 32061 0 11 4348 19 Chloroflexia Chloroflexales 4329 41 10 0 32064 order 1 2248 0 1508595 suborder 4 1508635 0 1 family 4 23 2248 Roseiflexaceae 1 genus 0 120961 3 11 2225 Roseiflexus Roseiflexus castenholzii 1029 1 0 120962 species 1185 no rank 2609473 0 1 Roseiflexus sp. RS-1 1185 1 357808 0 species 1508594 0 suborder 5 2040 0 1106 family 1 5 2040 2 Chloroflexaceae genus 1 0 1107 4 2038 41 Chloroflexus species 1 0 1108 2 1479 741 Chloroflexus aurantiacus 0 480224 strain 1 738 Chloroflexus sp. Y-400-fl 518 Chloroflexus aggregans 152260 0 species 1 Anaerolineae 18 4557 8 0 292625 1 class 0 292629 1 order 7 17 4539 Anaerolineales 6 0 292628 1 family Anaerolineaceae 11 4522 1 no rank 1324991 0 1856 1 species 0 1889813 Anaerolineaceae bacterium oral taxon 439 1856 Brevefilum 891 2 2 genus 1 0 2019482 species 1986204 0 1 889 Brevefilum fermentans Anaerolinea 1764 9 2 233189 0 genus 1 1 species 0 167964 Anaerolinea thermophila 1755 Ardenticatenia 71 3406 5 0 1382928 1 class order 1 1382929 0 4 3335 33 Ardenticatenales Ardenticatenaceae 20 3302 3 1 family 1382930 0 Candidatus Promineofilum 11 3282 2 1 genus 1988031 0 3271 Candidatus Promineofilum breve 0 1806508 species 1 clade 1798711 0 157 100359 Cyanobacteria 90 100359 157 1 phylum 1117 0 Synechococcales 246 41438 58 1 order 0 1890424 family 0 2303730 2 1651 2 170610 0 genus 1 Halomicronema 1651 5 species 0 1209493 1 1646 Halomicronema hongdechloris Acaryochloridaceae 1551 1 3 0 1890429 family 1 2 0 155977 1 genus Acaryochloris 1 1550 Acaryochloris marina 1549 1 species 0 155978 429 1 Pseudanabaenaceae family 1 1890436 0 3 2 0 1152 genus 1 Pseudanabaena 428 4 424 2593292 0 no rank 1 0 82654 species 1 424 Pseudanabaena sp. PCC 7367 23492 100 Synechococcaceae 0 1890426 family 1 33 Cyanobium 3568 61 3 genus 1 0 167375 no rank 2627006 0 1 1930 1930 Cyanobium sp. NIES-981 species 1851505 0 1 1577 Cyanobium gracile species 0 59930 1 4 719 Dactylococcopsis 1 genus 0 13034 2 1 0 292566 species Dactylococcopsis salina 715 genus 0 146785 1 506 1 146786 0 species Thermosynechococcus elongatus 506 26 0 1129 genus 1 Synechococcus 18599 266 2626047 0 no rank 23 17001 544 Synechococcus sp. NIES-970 0 1827144 species 1 1 84588 0 species Synechococcus sp. WH 8102 992 0 64471 species 1 355 Synechococcus sp. CC9311 782 Synechococcus sp. SynAce01 species 0 1916956 1 1 species 110662 0 Synechococcus sp. CC9605 680 1 316278 0 species Synechococcus sp. RCC307 867 2234 Synechococcus sp. JA-3-3Ab species 0 321327 1 species 0 1350461 1 682 Synechococcus sp. UTEX 2973 857 Synechococcus sp. WH 8109 species 0 166314 1 Synechococcus sp. PCC 6312 340 1 species 0 195253 1 374982 0 species Synechococcus sp. PCC 73109 360 Synechococcus sp. PCC 7117 329 1 0 195498 species 1 species 0 1173263 Synechococcus sp. PCC 7502 644 Synechococcus sp. KORDI-100 845 1 0 1280380 species Synechococcus sp. CC9902 499 1 0 316279 species 310 Synechococcus sp. PCC 8807 species 0 195248 1 32051 0 species 1 852 Synechococcus sp. WH 7803 1208 Synechococcus sp. KORDI-49 species 0 585423 1 Synechococcus sp. PCC 7003 505 1 species 0 374981 Synechococcus sp. PCC 7002 380 1 species 0 32049 Synechococcus sp. JA-2-3B'a(2-13) 1049 1 0 321332 species 1 0 29410 species Synechococcus sp. WH 8103 711 1 species 0 585425 Synechococcus sp. KORDI-52 976 643 Synechococcus elongatus 0 32046 species 1 0 33070 species 1 689 Synechococcus lividus 5 1 family 0 1213 Prochloraceae 9 6357 6348 8 Prochlorococcus genus 1 0 1218 4 no rank 2627481 0 2 1386 species 0 1501268 1 829 Prochlorococcus sp. MIT 0604 1 0 1501269 species Prochlorococcus sp. MIT 0801 557 Prochlorococcus marinus 4954 1 species 1219 0 1890438 0 family 1 6 5278 23 Leptolyngbyaceae Leptolyngbya 5255 11 5 genus 1 0 47251 3 no rank 0 2650499 4213 1 0 1080068 species Leptolyngbya sp. O-77 1776 1 0 111781 species Leptolyngbya sp. PCC 7376 1480 Leptolyngbya sp. NIES-3755 957 1 species 1752064 0 1031 Leptolyngbya boryana 1184 0 species 1 5 family 1 0 1890428 Merismopediaceae 2434 1 genus 1 0 1142 4 2433 20 Synechocystis 2413 3 no rank 2640012 0 1 species 0 1147 Synechocystis sp. PCC 6714 567 Synechocystis sp. PCC 6803 923 1 1148 0 species 1 species 0 2116702 Synechocystis sp. IPPAS B-1465 923 26321 subclass 0 1301283 46 20 1 order 0 1150 Oscillatoriales 46 9013 6 1397 Coleofasciculaceae 0 1892251 1 family 3 1391 11 Geitlerinema 0 63132 genus 1 2 0 2648775 no rank 1 1380 Geitlerinema sp. PCC 7407 1380 1 species 0 1173025 family 1 0 1892249 3 1057 49 Cyanothecaceae 2 0 43988 genus 1 Cyanothece 1008 406 602 1 2649277 0 no rank Cyanothece sp. PCC 7425 602 1 0 395961 species Microcoleaceae 2 2361 4 0 1892252 1 family Microcoleus 2 891 2 0 44471 1 genus 889 2642155 0 no rank 1 Microcoleus sp. PCC 7113 889 1 species 0 1173027 1468 genus 1205 0 1 1 species 0 1206 Trichodesmium erythraeum 1468 Gomontiellaceae 8 1174 3 0 1892255 1 family 0 241421 genus 1 2 1166 3 Crinalium 0 241425 species 1 1163 Crinalium epipsammum Oscillatoriaceae 2978 9 6 family 1 1892254 0 Moorea 5 1312 2 0 1155738 1 genus 1307 Moorea producens species 0 1155739 1 1 genus 0 1158 3 4 1657 Oscillatoria species 0 118323 1 898 Oscillatoria acuminata 755 Oscillatoria nigro-viridis 0 482564 species 1 order 1 0 1118 26 17308 65 Chroococcales Aphanothecaceae 10 8285 10 1 family 0 1890450 0 1453359 1 genus 2 1 493 Candidatus Atelocyanobacterium 492 Candidatus Atelocyanobacterium thalassa 0 713887 species 1 3428 2 genus 0 2546365 3428 2 species 2546366 0 strain 0 41431 1 1835 Cyanothece sp. PCC 8801 1 0 395962 strain Cyanothece sp. PCC 8802 1593 263510 0 genus 1 1189 1189 1 species 2546360 0 1 0 43989 strain Cyanothece sp. ATCC 51142 1189 28070 0 genus 2 2716 1988 species 0 2546356 1 1 strain 65393 0 Cyanothece sp. PCC 7424 1988 1 2546359 0 species 728 Cyanothece sp. PCC 7822 728 1 497965 0 strain no rank 92682 0 2 449 4 449 Halothece 0 76023 1 genus 2 1 no rank 0 2632878 445 0 65093 species 1 445 Halothece sp. PCC 7418 8 family 1 0 1890464 Chroococcaceae 4989 3 Gloeocapsa 4 724 2 0 102231 1 genus no rank 2623012 0 1 720 1 1173026 0 species Gloeocapsa sp. PCC 7428 720 Chondrocystis 854 2 2 genus 1 0 268175 852 1 2648896 0 no rank 2005460 0 species 1 852 Chondrocystis sp. NIES-4102 3 669357 0 genus 1 Geminocystis 3408 7 2 2625037 0 no rank 3401 1 0 1617448 species Geminocystis sp. NIES-3709 1796 Geminocystis sp. NIES-3708 1605 1 0 1615909 species 22 1687 Microcystaceae 1 family 0 1890449 4 7 1665 Microcystis 1 genus 0 1125 3 605 1 no rank 2643300 0 species 0 1967666 1 605 Microcystis sp. MC19 Microcystis aeruginosa 1053 1 species 1126 0 3 2282 Cyanobacteriaceae 0 1890452 1 family 3 Cyanobacterium 2 2279 2 0 102234 1 genus 2277 Cyanobacterium aponinum species 0 379064 1 8 1 order 0 52604 Pleurocapsales 7 2569 0 1890500 family 1 3 715 11 Hyellaceae 6 704 Pleurocapsa 1 genus 44474 0 2 698 Pleurocapsa minor 0 54308 species 1 4 0 1890498 1 family Dermocarpellaceae 7 1847 4 1840 Stanieria 1 genus 0 102115 3 821 Stanieria cyanosphaera 0 102116 species 1 no rank 2642663 0 1 1015 1 1807358 0 species Stanieria sp. NIES-3757 1015 14 2627 Gloeobacteria 0 307596 1 class 6 32 2613 Gloeobacterales 0 307595 1 order 5 0 1890422 1 family 4 32 2581 Gloeobacteraceae 3 0 33071 genus 1 Gloeobacter 2549 32 0 1416614 species 1 1124 Gloeobacter kilaueensis Gloeobacter violaceus 1393 1 33072 0 species Nostocales 25391 30 34 0 1161 order 1 939 1219117 0 no rank 1 Nostocales cyanobacterium HT-58-2 939 1 species 1940762 0 31 14291 Nostocaceae 1 family 0 1162 18 1 genus 0 1163 4 18 2747 Anabaena Anabaena cylindrica 929 1 species 0 1165 1800 2 no rank 0 2619674 0 1647413 species 1 945 Anabaena sp. WA102 855 Anabaena sp. 90 0 46234 species 1 genus 1 0 1177 10 9322 61 Nostoc 0 272131 species 1 1112 Nostoc punctiforme 6478 2593658 0 no rank 7 1 species 0 1751286 Nostoc sp. NIES-3756 914 Nostoc sp. CENA543 805 1 species 0 1869241 1 species 0 317936 Nostoc sp. PCC 7107 744 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1021 1 0 1261031 species 1116 Nostoc sp. PCC 7120 species 103690 0 1 649 Nostoc sp. PCC 7524 species 28072 0 1 1 species 0 1618022 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1229 0 1306274 species 1 1671 Nostoc flagelliforme Trichormus 2191 3 3 0 264688 genus 1 species 0 1164 1 959 Trichormus azollae 1 species 264691 0 Trichormus variabilis 1229 2012 9 Rivulariaceae 0 1185 family 1 3 3 2003 Rivularia 1 genus 0 373984 2 no rank 0 2676603 1 2000 373994 0 species 1 2000 Rivularia sp. PCC 7116 7280 8 family 2661849 0 1186 0 1 genus 8 30 7280 Calothrix 1 species 32054 0 Calothrix parietina 1203 6047 2619626 0 no rank 6 Calothrix sp. NIES-3974 970 1 species 0 2005462 571 Calothrix sp. PCC 7507 species 0 99598 1 Calothrix sp. NIES-4101 1249 1 0 2005461 species Calothrix sp. 336/3 650 1 species 0 1337936 1681 Calothrix sp. NIES-4071 species 0 2005469 1 1 0 1954171 species Calothrix sp. NIES-2098 926 Hapalosiphonaceae 2 839 3 1 family 0 1892263 1 genus 0 1190 2 1 837 Fischerella 1 494603 0 no rank 836 836 Fischerella sp. NIES-3754 0 1752063 species 1 810 1 1983111 0 no rank 810 cyanobacterium endosymbiont of Epithemia turgida species 0 718217 1 order 1890505 0 3 1113 Chroococcidiopsidaceae 40 1113 3 1 family 1890528 0 2 54298 0 genus 1 Chroococcidiopsis 1073 6 1067 Chroococcidiopsis thermalis species 0 54299 1 135 964679 Actinobacteria 1 phylum 0 201174 659 5 0 1497346 1 class Thermoleophilia 11 2528 order 1 0 588673 4 2517 85 Solirubrobacterales Conexibacteraceae 31 2432 3 1 family 320583 0 2401 37 Conexibacter genus 1 191494 0 2 2364 Conexibacter woesei species 0 191495 1 4 no rank 0 1752188 1267 Actinobacteria bacterium IMCC26103 180 1 0 1848756 species Actinobacteria bacterium IMCC19121 447 1 species 1848754 0 1 1848755 0 species Actinobacteria bacterium IMCC26077 249 species 1848255 0 1 391 Actinobacteria bacterium IMCC25003 604 1760 0 1 class Actinobacteria 7842 850094 Kineosporiales 1600 2 4 0 622452 order 1 3 0 83778 family 1 Kineosporiaceae 1598 30 1568 17 Kineococcus 33981 0 genus 1 2 species 0 131568 1 1551 Kineococcus radiotolerans order 1 0 85012 16 15653 75 Streptosporangiales Nocardiopsaceae 6332 95 7 83676 0 family 1 Nocardiopsis 97 5102 4 0 2013 1 genus 1 species 0 280236 Nocardiopsis gilva 1605 1 0 2014 species Nocardiopsis dassonvillei 1914 1 species 0 53437 Nocardiopsis alba 1486 Thermobifida 1135 8 2 0 83677 genus 1 Thermobifida fusca 1127 1 species 2021 0 1 family 0 2004 5 72 6635 Streptosporangiaceae 3962 46 Nonomuraea genus 1 83681 0 2 3916 no rank 0 2593643 1 3916 Nonomuraea sp. ATCC 55076 0 1909395 species 1 Streptosporangium 41 2601 2 0 2000 1 genus 2560 Streptosporangium roseum species 0 2001 1 1 family 0 2012 3 29 2611 Thermomonosporaceae 2582 61 Thermomonospora genus 1 0 2019 2 2521 Thermomonospora curvata species 0 2020 1 Pseudonocardiales 102 45270 42 1 order 0 85010 41 1 family 2070 0 Pseudonocardiaceae 731 45168 202 8374 Pseudonocardia 1 genus 0 1847 8 6786 6 0 2619320 no rank Pseudonocardia sp. HH130630-07 1103 1 0 1690815 species species 1096868 0 1 998 Pseudonocardia sp. EC080625-04 Pseudonocardia sp. EC080619-01 1111 1 species 0 1096856 Pseudonocardia sp. HH130629-09 1122 1 species 0 1641402 445576 0 species 1 1324 Pseudonocardia sp. AL041005-10 Pseudonocardia sp. EC080610-09 1128 1 species 1688404 0 0 240495 species 1 1386 Pseudonocardia dioxanivorans 7 2223 Kibdelosporangium 0 2029 1 genus 2 2216 Kibdelosporangium phytohabitans 0 860235 species 1 Prauserella 1077 8 2 0 142577 genus 1 1 species 0 530584 Prauserella marina 1069 2 genus 1 0 43356 Kutzneria 2383 9 1 0 43357 species Kutzneria albida 2374 2 0 165301 1 genus Lentzea 17 2105 2088 Lentzea guizhouensis species 0 1586287 1 Saccharothrix 6 1906 2 1 genus 0 2071 species 0 103731 1 1900 Saccharothrix espanaensis 1756 7 Saccharopolyspora 0 1835 genus 1 2 1 1836 0 species Saccharopolyspora erythraea 1749 0 40566 1 genus 3 91 4663 Actinosynnema 2287 Actinosynnema mirum species 0 40567 1 Actinosynnema pretiosum 2285 1 species 0 42197 1 genus 0 1851 2 3 607 Saccharomonospora species 0 1852 1 604 Saccharomonospora viridis 2 0 674734 genus 1 Alloactinosynnema 1346 24 no rank 2636053 0 1 1322 Alloactinosynnema sp. L-07 1322 1 species 0 1653480 Actinoalloteichus 6083 117 6 0 65496 genus 1 no rank 2644606 0 2 2430 1 species 0 2072503 Actinoalloteichus sp. AHMU CJ021 1169 species 0 1612551 1 1261 Actinoalloteichus sp. GBA129-24 1 0 1612552 species Actinoalloteichus sp. ADI127-7 1269 1375 Actinoalloteichus hoggarensis species 0 1470176 1 892 Actinoalloteichus hymeniacidonis species 340345 0 1 7 0 1813 genus 1 Amycolatopsis 11914 294 31958 0 species 1 3050 Amycolatopsis orientalis 1428 Amycolatopsis methanolica 0 1814 species 1 species 0 208439 1 1856 Amycolatopsis japonica 1 species 0 33910 Amycolatopsis mediterranei 2104 3182 2 no rank 0 2618356 1777 Amycolatopsis sp. AA4 1896961 0 species 1 Amycolatopsis sp. BJA-103 1405 1 0 1911175 species 52018 0 no rank 1 511 1 species 0 1650658 Actinobacteria bacterium IMCC26256 511 279143 176 Bifidobacteriales 0 85004 order 1 27 26 0 31953 family 1 Bifidobacteriaceae 278967 9863 2 1 genus 0 196081 Scardovia 1 597 species 0 78259 1 596 Scardovia inopinata 0 2701 1 genus 2 3 1797 Gardnerella 1794 Gardnerella vaginalis species 0 2702 1 Bifidobacterium 2496 265289 19 1 genus 1678 0 4256 Bifidobacterium angulatum species 0 1683 1 1 0 216816 species Bifidobacterium longum 61629 Bifidobacterium choerinum 2740 1 0 35760 species 7801 Bifidobacterium adolescentis 0 1680 species 1 Bifidobacterium scardovii 3317 1 species 0 158787 Bifidobacterium bifidum 37055 1 1681 0 species 3096 Bifidobacterium animalis species 0 28025 1 0 1691 species 1 1087 Bifidobacterium indicum 1 species 0 1684 Bifidobacterium asteroides 1579 75370 Bifidobacterium pseudocatenulatum 0 28026 species 1 30578 9324 Bifidobacterium catenulatum species 1 0 1686 2 Bifidobacterium kashiwanohense 21254 1 subspecies 0 630129 24530 Bifidobacterium breve 0 1685 species 1 1085 Bifidobacterium actinocoloniiforme 0 638619 species 1 1 species 0 33905 Bifidobacterium thermophilum 1880 Bifidobacterium coryneforme 954 1 0 1687 species 2930 Bifidobacterium pseudolongum species 0 1694 1 2906 Bifidobacterium dentium species 1689 0 1 2 196082 0 genus 1 Parascardovia 1421 11 species 0 78258 1 1410 Parascardovia denticolens 145 0 85006 1 order Micrococcales 1284 108695 Dermatophilaceae 3 836 3 1 family 0 85018 2 0 1862 1 genus Dermatophilus 22 833 811 Dermatophilus congolensis 0 1863 species 1 family 1 0 85023 49 35639 395 Microbacteriaceae 1 genus 0 33886 3 35 1110 Rathayibacter 719 Rathayibacter tritici 0 33888 species 1 species 145458 0 1 356 Rathayibacter toxicus 2 0 33877 genus 1 Agromyces 1441 5 1436 Agromyces aureus species 0 453304 1 2 genus 1 0 1705353 Aurantimicrobium 569 3 1 species 708131 0 Aurantimicrobium minutum 566 3 no rank 1655488 0 479 clade 0 1655489 3 479 Rhodoluna 2 479 3 0 529883 1 genus species 0 535712 1 286 Candidatus Rhodoluna planktonica 191 Rhodoluna lacicola species 0 529884 1 95 3158 Cryobacterium 0 69578 1 genus 3 Cryobacterium arcticum 1646 1 0 670052 species 2649013 0 no rank 1 1417 0 1978566 species 1 1417 Cryobacterium sp. LW097 1 genus 0 33882 14 343 13176 Microbacterium 1 species 0 300019 Microbacterium paludicola 951 species 0 84292 1 686 Microbacterium chocolatum 1 species 0 2033 Microbacterium testaceum 982 0 2609290 no rank 8 8046 1 0 1906742 species Microbacterium sp. BH-3-3-3 864 1 species 0 2103230 Microbacterium sp. str. 'China' 1076 1 species 0 367477 Microbacterium sp. XT11 966 1 species 0 1795053 Microbacterium sp. PAMC 28756 1150 832 Microbacterium sp. TPU 3598 species 0 1938334 1 Microbacterium sp. No. 7 1597 1 0 1714373 species 1916917 0 species 1 802 Microbacterium sp. 1.5R 1 species 0 1696072 Microbacterium sp. CGR1 759 1043 Microbacterium aurum species 0 36805 1 species 0 162426 1 1125 Microbacterium hominis 2 518733 0 1 genus Microterricola 3 1059 species 0 412690 1 1056 Microterricola viridarii 2 0 110932 genus 1 Leifsonia 2597 22 species 0 1575 1 2575 Leifsonia xyli 0 337004 genus 1 2 625 11 Microcella species 0 279828 1 614 Microcella alkaliphila 6 genus 1 0 1573 Clavibacter 4703 285 4418 914 Clavibacter michiganensis 0 28447 species 1 5 0 31964 subspecies 1 1174 Clavibacter sepedonicus 0 1874630 subspecies 1 893 Clavibacter capsici 735 Clavibacter nebraskensis subspecies 0 31963 1 1 0 33014 subspecies Clavibacter insidiosus 702 4 0 2034 genus 1 Curtobacterium 3393 43 1918 2 no rank 257496 0 Curtobacterium sp. MR_MD2014 911 1 species 0 1561023 1007 Curtobacterium sp. BH-2-1-1 0 1905847 species 1 1 species 0 69373 Curtobacterium pusillum 1432 665 1 genus 1434032 0 1 1159327 0 species Pontimonas salivibrio 665 genus 1 0 1759331 2 947 7 Cnuibacter Cnuibacter physcomitrellae 940 1 0 1619308 species 1 genus 0 447237 2 2 1322 Frondihabitans no rank 0 2626248 1 1320 Frondihabitans sp. PAMC 28766 1320 1 species 0 1795630 2 85022 0 family 557 557 23 Jonesia genus 1 0 43673 2 Jonesia denitrificans 534 1 species 0 43674 85020 0 family 1 11 8533 40 Dermabacteraceae Brachybacterium 172 6956 6 1 genus 0 43668 1 0 2017484 species Brachybacterium sp. VM2412 1349 species 1331682 0 1 1563 Brachybacterium ginsengisoli Brachybacterium faecium 1360 1 0 43669 species 1370 1 no rank 2623841 0 1370 Brachybacterium sp. P6-10-X1 species 0 1903186 1 species 0 2017485 1 1142 Brachybacterium sp. VR2415 Dermabacter 4 754 2 1 genus 36739 0 species 1630135 0 1 750 Dermabacter vaginalis 2 genus 1 0 472568 Devriesea 783 8 species 0 472569 1 775 Devriesea agamarum 0 145357 family 1 7 3086 55 Dermacoccaceae 2 1 genus 0 745364 Luteipulveratus 30 904 Luteipulveratus mongoliensis 874 1 0 571913 species 10 1085 Dermacoccus 0 57495 1 genus 2 1 species 0 1274 Dermacoccus nishinomiyaensis 1075 1042 14 Kytococcus genus 1 0 57499 2 0 1276 species 1 1028 Kytococcus sedentarius Micrococcaceae 39415 1752 38 0 1268 family 1 848 1 genus 2078575 0 848 Arthrobacter sp. IHBB 11108 1618207 0 species 1 1 1645 0 genus 357 357 Renibacterium salmoninarum 0 1646 species 1 3 0 32207 1 genus Rothia 13 2807 1 0 43675 species Rothia mucilaginosa 2081 Rothia dentocariosa 713 1 species 0 2047 Kocuria 3540 63 4 genus 1 0 57493 1 0 71999 species Kocuria palustris 1057 0 72000 species 1 1171 Kocuria rhizophila Kocuria flava 1249 1 species 0 446860 879 genus 0 1742992 1 879 Paenarthrobacter aurescens 0 43663 species 1 19300 411 Arthrobacter 0 1663 genus 1 15 2021 Arthrobacter crystallopoietes species 0 37928 1 Arthrobacter alpinus 2332 1 0 656366 species 12 235627 0 no rank 14536 1 species 0 1806905 Arthrobacter sp. ZXY-2 834 Arthrobacter sp. ATCC 21022 804 1 species 0 1771959 0 2020486 species 1 1188 Arthrobacter sp. YN species 0 1690248 1 1597 Arthrobacter sp. LS16 Arthrobacter sp. PGP41 1115 1 species 0 2079227 1249 Arthrobacter sp. FB24 0 290399 species 1 1156 Arthrobacter sp. PAMC 25486 species 0 1494608 1 Arthrobacter sp. ERGS1:01 1261 1 0 1704044 species Arthrobacter sp. QXT-31 1244 1 species 1357915 0 Arthrobacter sp. YC-RL1 1612 1 species 0 1652545 0 1849032 species 1 1271 Arthrobacter sp. U41 1 1118963 0 species Arthrobacter sp. Rue61a 1205 Micrococcus 1363 49 2 0 1269 genus 1 1 species 1270 0 Micrococcus luteus 1314 0 1742989 genus 1 2 2266 21 Glutamicibacter Glutamicibacter arilaitensis 2245 1 species 0 256701 genus 1 0 1742993 4 3652 63 Pseudarthrobacter 1252 Pseudarthrobacter sulfonivorans 0 121292 species 1 0 85085 species 1 1330 Pseudarthrobacter chlorophenolicus 1 species 361575 0 Pseudarthrobacter phenanthrenivorans 1007 0 596707 genus 1 2 1181 31 Sinomonas 1 37927 0 species Sinomonas atrocyanea 1150 5 1470 Neomicrococcus 1868332 0 1 genus 2 0 556325 species 1 1465 Neomicrococcus aestuarii family 1 0 85021 9 4386 64 Intrasporangiaceae 2 1 genus 0 265976 Serinicoccus 31 1225 1194 Serinicoccus sp. JLT9 species 1758689 0 1 2 genus 1 0 53457 Janibacter 921 10 1 0 857417 species Janibacter indicus 911 Intrasporangium 17 807 2 0 53357 1 genus Intrasporangium calvum 790 1 0 53358 species 1369 17 Arsenicicoccus genus 1 0 267408 2 1352 1 no rank 2663846 0 species 0 1658671 1 1352 Arsenicicoccus sp. oral taxon 190 6 85016 0 family 1 Cellulomonadaceae 4397 59 1 genus 0 1707 5 160 4338 Cellulomonas 0 1708 species 1 1310 Cellulomonas fimi 882 2620175 0 no rank 1 882 Cellulomonas sp. PSBB021 species 0 2003551 1 0 1711 species 1 1065 Cellulomonas flavigena 921 Cellulomonas gilvus 11 0 species 1 family 1 145360 0 3 1073 2 Sanguibacteraceae 1071 11 Sanguibacter 0 60919 genus 1 2 Sanguibacter keddieii 1060 1 species 0 60920 Beutenbergiaceae 18 1051 3 0 125316 1 family Beutenbergia 1033 8 2 0 84756 genus 1 Beutenbergia cavernae 1025 1 0 84757 species 75 6188 Promicromonosporaceae 1 family 85017 0 9 32 2367 Cellulosimicrobium 1 genus 0 157920 3 1 no rank 0 2624466 1315 1315 Cellulosimicrobium sp. TH-20 species 0 1980001 1 0 1710 species 1 1020 Cellulosimicrobium cellulans 0 254250 1 genus 3 65 2126 Isoptericola 0 372663 species 1 1071 Isoptericola dokdonensis 990 Isoptericola variabilis species 139208 0 1 21 1620 Xylanimonas 1 genus 0 186188 2 1599 Xylanimonas cellulosilytica 0 186189 species 1 425 no rank 577468 0 1 1 genus 2038 0 425 Tropheryma whipplei 425 1 2039 0 species 11 1825 Brevibacteriaceae 1 family 0 85019 3 genus 1 0 1696 2 1814 15 Brevibacterium 1799 Brevibacterium linens 1703 0 species 1 82 order 1 0 85011 Streptomycetales 138830 280 81 family 1 0 2062 Streptomycetaceae 138550 925 Kitasatospora 133 8039 5 1 genus 0 2063 2310 1 no rank 2633591 0 2310 Kitasatospora sp. MMS16-BH015 0 2018025 species 1 0 1894 species 1 1866 Kitasatospora aureofaciens 1 species 0 2066 Kitasatospora setae 2212 1518 Kitasatospora albolonga species 68173 0 1 75 1 genus 1883 0 Streptomyces 4480 129586 1 0 1889 species Streptomyces ambofaciens 1293 species 54571 0 1 2641 Streptomyces venezuelae Streptomyces pactum 2956 1 species 0 68249 species 0 146923 1 1571 Streptomyces parvulus 0 67267 species 1 1547 Streptomyces alboflavus 0 1969 species 1 2108 Streptomyces chartreusis 1 0 68280 species Streptomyces violaceusniger 2383 1 0 68192 species Streptomyces cyaneogriseus 1513 species 1901 0 1 1325 Streptomyces clavuligerus 1 0 68202 species Streptomyces fulvissimus 1146 1 0 2049881 species Streptomyces sp. XZHG99 1468 0 75293 species 1 2260 Streptomyces autolyticus 0 285473 species 1 1278 Streptomyces rubrolavendulae 1403 Streptomyces lividans 0 1916 species 1 1 species 0 68570 Streptomyces albulus 1721 Streptomyces albus 3078 1 0 1888 species Streptomyces xinghaiensis 1460 1 species 1038928 0 species 0 164348 1 1739 Streptomyces puniciscabiei Streptomyces lincolnensis 1678 1 species 0 1915 68214 0 species 1 1976 Streptomyces griseochromogenes 2350 Streptomyces malaysiensis 0 92644 species 1 1 1912 0 species Streptomyces hygroscopicus 3757 1621 Streptomyces scabiei species 0 1930 1 species 0 1355015 1 1299 Streptomyces pluripotens 2 629295 0 species group 2719 0 1482596 species subgroup 1 1549 0 1911 species 1 1549 Streptomyces griseus 1170 1 1482558 0 species subgroup 1 0 1908 species Streptomyces globisporus 1170 1593 Streptomyces cattleya 0 29303 species 1 1 species 0 1971 Streptomyces noursei 1431 1 33903 0 species Streptomyces avermitilis 1772 0 1169025 species 1 1405 Streptomyces pratensis 1 species 1642299 0 Streptomyces alfalfae 1862 2207 Streptomyces bingchenggensis species 0 379067 1 1 species 1940 0 Streptomyces albireticuli 1720 1 species 0 1914 Streptomyces lavendulae 1294 Streptomyces niveus 1415 1 species 193462 0 Streptomyces vietnamensis 1511 1 species 362257 0 species 0 47763 1 4291 Streptomyces lydicus Streptomyces xiamenensis 1489 1 species 0 408015 1 0 1616117 species Streptomyces formicae 1522 Streptomyces glaucescens 1500 1 0 1907 species 36976 no rank 2593676 0 24 Streptomyces sp. Sge12 1255 1 species 0 1972846 species 444103 0 1 1742 Streptomyces sp. CNQ-509 1 species 0 1751294 Streptomyces sp. 4F 1340 1 species 0 1649184 Streptomyces sp. CFMR 7 1417 1377 Streptomyces sp. SirexAA-E 0 862751 species 1 species 1725411 0 1 2105 Streptomyces sp. CdTB01 Streptomyces sp. MOE7 1559 1 species 0 1961713 1 0 1964449 species Streptomyces sp. 3211 1295 1 species 0 234612 Streptomyces sp. TN58 1308 Streptomyces sp. WAC00288 1309 1 2094021 0 species 1 species 0 1841249 Streptomyces sp. RTd22 2242 Streptomyces sp. CLI2509 1212 1 0 1984801 species species 0 1849967 1 1395 Streptomyces sp. SAT1 Streptomyces sp. P3 1925 1 species 0 2135430 1 1812480 0 species Streptomyces sp. fd1-xmd 1362 species 0 206662 1 1471 Streptomyces sp. FR-008 1 species 0 1661694 Streptomyces sp. Tue 6075 1276 1 0 465541 species Streptomyces sp. Mg1 1460 Streptomyces sp. CMB-StM0423 1893 1 2059884 0 species Streptomyces sp. CCM_MD2014 1332 1 0 1561022 species 1 species 0 1265601 Streptomyces sp. PAMC 26508 1412 Streptomyces sp. S8 1131 1 1837283 0 species 1495638 0 species 1 2529 Streptomyces sp. M56 Streptomyces sp. 769 1629 1 0 1262452 species 1350 Streptomyces collinus 0 42684 species 1 1544 Streptomyces leeuwenhoekii species 1437453 0 1 Streptomyces gilvosporeus 1705 1 0 553510 species Streptomyces peucetius 1337 1 1950 0 species 1381 Streptomyces pristinaespiralis 0 38300 species 1 species 0 1783515 1 1482 Streptomyces sp. S10(2016) Streptomyces reticuli 1554 1 species 0 1926 1 0 1935 species Streptomyces violaceoruber 1346 species group 1477431 0 2 3129 Streptomyces sampsonii 1682 1 0 42239 species 1902 0 species 1 1447 Streptomyces coelicolor 1 order 0 2039638 12 14 4807 Candidatus Nanopelagicales 11 2162846 0 family 4793 9 3802 Candidatus Planktophila 1 genus 0 622681 7 0 1884914 species 1 799 Candidatus Planktophila dulcis Candidatus Planktophila versatilis 834 1 0 1884905 species Candidatus Planktophila sulfonica 293 1 species 0 1884904 1 species 0 573600 Candidatus Planktophila limnetica 413 943 Candidatus Planktophila lacus species 1884913 0 1 1884907 0 species 1 511 Candidatus Planktophila vernalis 4 genus 1 2039639 0 Candidatus Nanopelagicus 991 2 species 0 1884634 1 248 Candidatus Nanopelagicus limnes Candidatus Nanopelagicus hibericus 439 1 species 0 1884915 species 0 1884916 1 302 Candidatus Nanopelagicus abundans Propionibacteriales 28211 298 34 0 85009 order 1 Propionibacteriaceae 18520 240 20 family 1 0 31957 4 genus 1 0 1912216 Cutibacterium 3381 27 1436 Cutibacterium avidum 0 33010 species 1 Cutibacterium granulosum 767 1 species 0 33011 1 species 0 1747 Cutibacterium acnes 1151 3 genus 1 0 1743 Propionibacterium 3550 66 939 no rank 2608905 0 1 species 0 671223 1 939 Propionibacterium sp. oral taxon 193 0 1744 species 1 2545 Propionibacterium freudenreichii 2801844 0 genus 1 1081 1081 Pseudopropionibacterium propionicum species 0 1750 1 0 1912215 1 genus 2 28 2124 Acidipropionibacterium 1 1748 0 species Acidipropionibacterium acidipropionici 2096 68 5586 Tessaracoccus 0 72763 1 genus 5 1371 1 no rank 0 2635419 1371 Tessaracoccus sp. T2.5-30 0 1909732 species 1 1275 Tessaracoccus flavus 0 1610493 species 1 0 399497 species 1 1384 Tessaracoccus flavescens 1 0 1332264 species Tessaracoccus aquimaris 1488 genus 1 0 203133 2 1437 4 Propionimicrobium 1 2633994 0 no rank 1433 1433 Propionimicrobium sp. Marseille-P3275 0 1871034 species 1 Microlunatus 9 1121 2 29404 0 1 genus Microlunatus phosphovorus 1112 1 0 29405 species 13 family 1 85015 0 Nocardioidaceae 9393 158 0 116071 genus 1 2 1239 26 Micropruina 1213 Micropruina glycogenica 0 75385 species 1 2 1 genus 0 182639 Kribbella 24 1457 0 182640 species 1 1433 Kribbella flavida genus 1 0 2044 2 1523 32 Pimelobacter 1491 Pimelobacter simplex species 2045 0 1 0 1839 1 genus 4 62 3728 Nocardioides 1 0 2045452 species Nocardioides sp. 78 1085 species 0 450734 1 1305 Nocardioides dokdonensis 1276 no rank 0 2615069 1 1 0 196162 species Nocardioides sp. JS614 1276 2 0 2040 genus 1 Aeromicrobium 1288 17 0 2041 species 1 1271 Aeromicrobium erythreum Nakamurellales 1 1559 4 1 order 1643684 0 1558 57 Nakamurellaceae 0 85031 family 1 3 1501 34 Nakamurella 0 53460 genus 1 2 1 0 53461 species Nakamurella multipartita 1467 20 2625 Catenulisporales 1 order 0 414714 4 Catenulisporaceae 26 2605 3 0 414877 1 family 2579 33 Catenulispora 0 414878 genus 1 2 2546 Catenulispora acidiphila species 0 304895 1 0 85008 order 1 20 23755 54 Micromonosporales 0 28056 1 family 19 351 23701 Micromonosporaceae Salinispora 2258 49 3 genus 1 0 168694 958 Salinispora tropica 0 168695 species 1 Salinispora arenicola 1251 1 species 0 168697 4 genus 1 0 673534 Plantactinospora 5041 146 4895 2631981 0 no rank 3 1477 Plantactinospora sp. BB1 species 0 2071627 1 0 2108470 species 1 1531 Plantactinospora sp. BC1 Plantactinospora sp. KBS50 1887 1 species 0 2024580 263 10747 Actinoplanes 1 genus 1865 0 6 no rank 0 2626549 3 6033 Actinoplanes sp. SE50/110 1882 1 0 134676 species Actinoplanes sp. SE50 1882 1 0 2033844 species 2269 Actinoplanes sp. N902-109 0 649831 species 1 1 196914 0 species Actinoplanes friuliensis 2232 2219 Actinoplanes missouriensis species 1866 0 1 84593 0 genus 1 7 Verrucosispora 1873 0 1 genus 4 142 5297 Micromonospora 1 0 1003110 species Verrucosispora maris 1346 Micromonospora aurantiaca 1930 1 species 0 47850 no rank 2617518 0 1 1879 Micromonospora sp. L5 1879 1 648999 0 species 4 1730 Glycomycetales 1 order 0 85014 4 85034 0 family 1 3 1726 31 Glycomycetaceae 2 0 283810 1 genus Stackebrandtia 36 1695 1 species 0 283811 Stackebrandtia nassauensis 1659 7 order 1 0 85013 Frankiales 5370 18 0 74712 1 family 6 88 5352 Frankiaceae 5264 93 Frankia 1854 0 genus 1 5 0 298654 species 1 1529 Frankia inefficax 1391 no rank 2632575 0 1 Frankia sp. EAN1pec 1391 1 0 298653 species Frankia casuarinae 854 1 species 0 106370 species 0 1859 1 1397 Frankia alni 8 1 order 0 1643682 Geodermatophilales 12 4380 Geodermatophilaceae 4368 149 7 0 85030 family 1 Modestobacter 55 1562 2 1 genus 0 88138 Modestobacter marinus 1507 1 0 477641 species Geodermatophilus 34 1338 2 1 genus 0 1860 0 1861 species 1 1304 Geodermatophilus obscurus Blastococcus 31 1319 2 0 38501 1 genus 1 species 0 138336 Blastococcus saxobsidens 1288 622450 0 order 1 4 1177 2 Actinopolysporales Actinopolysporaceae 4 1175 3 0 622451 1 family Actinopolyspora 1171 36 2 0 1849 genus 1 414996 0 species 1 1135 Actinopolyspora erythraea 44 23770 Actinomycetales 2037 0 1 order 20 19 0 2049 1 family Actinomycetaceae 4723 23726 1 genus 0 2050 2 82 2618 Mobiluncus 1 species 2051 0 Mobiluncus curtisii 2536 1 genus 0 1069494 2 12 2472 Trueperella 2460 Trueperella pyogenes 0 1661 species 1 2 0 1653174 genus 1 Actinotignum 811 1 1 59505 0 species Actinotignum schaalii 810 1744 genus 2529408 0 1 species 0 52773 1 1744 Actinomyces meyeri 1 genus 0 1654 9 261 10391 Actinomyces 0 1960083 species 1 1024 Actinomyces gaoshouyii Actinomyces sp. VUL4_3 644 1 species 0 1912795 4061 no rank 2609248 0 3 Actinomyces sp. oral taxon 414 1569 1 species 0 712122 species 0 1851395 1 1147 Actinomyces sp. Chiba101 1 species 0 2081702 Actinomyces sp. oral taxon 897 1345 1 0 544580 species Actinomyces oris 1102 Actinomyces radicidentis 1737 1 0 111015 species 1562 Actinomyces pacaensis 0 1852377 species 1 Arcanobacterium 967 2 2 genus 1 28263 0 Arcanobacterium haemolyticum 965 1 28264 0 species 0 1643683 order 1 4 313 6 Acidothermales family 1 0 85032 3 307 8 Acidothermaceae 8 299 Acidothermus 0 28048 1 genus 2 Acidothermus cellulolyticus 291 1 species 0 28049 1117 1643818 0 no rank 2 Thermobispora 21 1117 2 147067 0 1 genus Thermobispora bispora 1096 1 species 0 2006 Corynebacteriales 1201 153736 163 1 order 0 85007 731 2 no rank 697024 0 Lawsonella 731 5 2 0 1847725 genus 1 1 species 0 1528099 Lawsonella clevelandensis 726 3 family 1 0 316606 Segniliparaceae 669 4 2 0 286801 genus 1 Segniliparus 665 9 Segniliparus rotundus 656 1 species 286802 0 family 1 0 85025 31 35999 241 Nocardiaceae 23 1827 0 1 genus Rhodococcus 968 23666 0 1830 species 1 1172 Rhodococcus ruber 1194 Rhodococcus aetherivorans 191292 0 species 1 1 species 0 132919 Rhodococcus jostii 1027 1303 Rhodococcus erythropolis 0 1833 species 1 1 0 103816 species Rhodococcus pyridinivorans 1032 Rhodococcus hoagii 842 1 species 0 43767 10535 12 no rank 192944 0 784 Rhodococcus sp. H-CA8f species 0 1727214 1 0 1805827 species 1 942 Rhodococcus sp. MTM3W5.2 1 species 0 1564114 Rhodococcus sp. B7740 1155 1 0 1045808 species Rhodococcus sp. YL-1 838 Rhodococcus sp. p52 912 1 0 935199 species 1 0 1570939 species Rhodococcus sp. 2G 942 1389 Rhodococcus sp. WB1 species 0 1033922 1 Rhodococcus sp. 008 670 1 0 1723645 species 1 species 1807790 0 Rhodococcus sp. BH4 609 species 0 679318 1 652 Rhodococcus sp. WMMA185 1653478 0 species 1 966 Rhodococcus sp. PBTS 1 676 Rhodococcus sp. PBTS 2 species 1653479 0 1 0 37919 species 1 2888 Rhodococcus opacus Rhodococcus rhodochrous 993 1 species 0 1829 species 0 1828 1 924 Rhodococcus fascians 1 species 0 334542 Rhodococcus qingshengii 788 Nocardia 12092 246 7 genus 1 0 1817 1 0 455432 species Nocardia terpenica 1553 Nocardia brasiliensis 2647 1 species 0 37326 species 0 37332 1 1898 Nocardia seriolae species 0 37329 1 1761 Nocardia farcinica species 0 135487 1 2437 Nocardia cyriacigeorgica 1550 Nocardia nova 37330 0 species 1 Gordoniaceae 7946 93 9 family 1 85026 0 7853 180 Gordonia 2053 0 genus 1 8 783 Gordonia iterans 0 1004901 species 1 1 2054 0 species Gordonia bronchialis 990 Gordonia phthalatica 1225 1 species 0 1136941 1 0 2055 species Gordonia terrae 1322 1140 Gordonia polyisoprenivorans 84595 0 species 1 2 no rank 0 2657482 2213 1 0 2059875 species Gordonia sp. YC-JH1 880 1 0 337191 species Gordonia sp. KTR9 1333 Tsukamurellaceae 2421 21 4 family 1 85028 0 2400 118 Tsukamurella 0 2060 genus 1 3 0 2061 species 1 1078 Tsukamurella paurometabola 1 0 57704 species Tsukamurella tyrosinosolvens 1204 0 1762 family 1 57 49606 179 Mycobacteriaceae 1073531 0 genus 2 1707 875328 0 species 1 929 Mycobacterium sinense 1 species 1788 0 Mycobacterium terrae 778 2188 28210 Mycobacterium 1 genus 1763 0 34 1 0 261524 species Mycobacterium liflandii 853 species group 120793 0 8 5777 701042 0 species 1 615 Mycobacterium marseillense 0 1764 species 1 2116 Mycobacterium avium Mycobacterium colombiense 1056 1 species 0 339268 298 Mycobacterium paraintracellulare species 1138383 0 1 4 0 1767 1 species Mycobacterium intracellulare 410 1692 1 subspecies 0 222805 Mycobacterium chimaera 627 1 0 1203599 subspecies Mycobacterium yongonense 383 Mycobacterium indicus pranii 272 1 0 35617 subspecies 1 species 0 1769 Mycobacterium leprae 244 1 species 0 482462 Mycobacterium dioxanotrophicus 1507 species 0 1809 1 702 Mycobacterium ulcerans 915 Mycobacterium marinum 0 1781 species 1 1108 Mycobacterium haemophilum 0 29311 species 1 948 2249310 0 species group 1 0 722731 species 1 948 Mycobacterium shigaense 1 species 1768 0 Mycobacterium kansasii 1020 4 77643 0 species group 1583 1144 433 Mycobacterium tuberculosis species 1 0 1773 3 1 0 33894 biotype Mycobacterium africanum 349 Mycobacterium bovis 362 1 0 1765 biotype 1 0 78331 species Mycobacterium canettii 439 11365 no rank 2642494 0 13 species 0 164757 1 871 Mycobacterium sp. JLS 1 1545728 0 species Mycobacterium sp. EPa45 934 1 0 1168287 species Mycobacterium sp. MOTT36Y 314 1 species 212767 0 Mycobacterium sp. JS623 1025 929 Mycobacterium sp. PYR15 species 0 2051552 1 species 164756 0 1 813 Mycobacterium sp. MCS 0 1682113 species 1 1038 Mycobacterium sp. YC-RL4 Mycobacterium sp. djl-10 1280 1 0 1879023 species 850 Mycobacterium sp. VKM Ac-1817D species 0 1273687 1 species 1920667 0 1 968 Mycobacterium sp. WY10 890 Mycobacterium sp. NRRL B-3805 species 1570328 0 1 Mycobacterium sp. KMS 836 1 0 189918 species 1 0 1561223 species Mycobacterium sp. QIA-37 617 Hoyosella 463 1 2 0 697025 genus 1 462 Hoyosella subflava 0 639313 species 1 14534 1866885 0 genus 13 0 1797 species 1 1061 Mycobacterium thermoresistibile 890 Mycobacterium neoaurum species 0 1795 1 1 0 1772 species Mycobacterium smegmatis 1633 1 species 0 1804 Mycobacterium gilvum 1217 1 134601 0 species Mycobacterium goodii 1350 Mycobacterium vanbaalenii 1088 1 species 110539 0 1233 Mycobacterium aurum 0 1791 species 1 884 Mycobacterium rhodesiae 0 36814 species 1 species 1800 0 1 918 Mycobacterium chubuense 1 species 0 758802 Mycobacterium litorale 995 species 0 1766 1 908 Mycobacterium fortuitum species 0 1771 1 1228 Mycobacterium phlei Mycobacterium vaccae 1129 1 0 1810 species 5 genus 670516 0 4513 1 species 0 1774 Mycobacterium chelonae 604 Mycobacterium abscessus 1617 1 species 0 36809 651 Mycobacterium saopaulense 0 1578165 species 1 1 0 1520670 species Mycobacterium stephanolepidis 856 1 83262 0 species Mycobacterium immunogenum 785 4 1 family 0 85029 Dietziaceae 13 1950 3 genus 1 0 37914 Dietzia 1937 64 1 2617939 0 no rank 1121 1121 Dietzia sp. oral taxon 368 0 712270 species 1 Dietzia timorensis 752 1 499555 0 species 0 1653 1 family 52 291 53213 Corynebacteriaceae 51 1 genus 0 1716 Corynebacterium 1294 52922 1 species 0 160386 Corynebacterium casei 1405 980 Corynebacterium imitans 156978 0 species 1 Corynebacterium ulcerans 923 1 0 65058 species 1 0 42817 species Corynebacterium argentoratense 615 species 0 225326 1 1192 Corynebacterium halotolerans species 0 203263 1 819 Corynebacterium aquilae 1 species 0 169292 Corynebacterium aurimucosum 1052 1764 Corynebacterium glutamicum 0 1718 species 1 Corynebacterium stationis 1094 1 1705 0 species 1 1230998 0 species Corynebacterium frankenforstense 1361 0 28028 species 1 657 Corynebacterium flavescens Corynebacterium glaucum 813 1 species 0 187491 Corynebacterium sphenisci 1451 1 0 191493 species 911 Corynebacterium pseudotuberculosis species 0 1719 1 38289 0 species 1 2214 Corynebacterium jeikeium 944 [Brevibacterium] flavum species 0 92706 1 1 species 1404244 0 Corynebacterium glyciniphilum 1282 1 0 401472 species Corynebacterium ureicelerivorans 767 Corynebacterium simulans 1252 1 species 0 146827 1 species 0 1721 Corynebacterium callunae 1046 Corynebacterium diphtheriae 1424 1 species 1717 0 1 0 161879 species Corynebacterium kroppenstedtii 538 1 0 1072256 species Corynebacterium uterequi 810 1546 Corynebacterium vitaeruminis species 38305 0 1 Corynebacterium crudilactis 1547 1 species 0 1652495 Corynebacterium mustelae 1014 1 species 0 571915 1 1050174 0 species Corynebacterium epidermidicanis 525 0 1121358 species 1 977 Corynebacterium doosanense 474 Corynebacterium cystitidis 0 35757 species 1 Corynebacterium variabile 1003 1 species 0 1727 612 Corynebacterium atypicum 0 191610 species 1 Corynebacterium deserti 1139 1 species 1408191 0 882 Corynebacterium urealyticum species 0 43771 1 1125 Corynebacterium singulare 0 161899 species 1 1 0 575200 species Corynebacterium maris 1573 717 Corynebacterium phocae species 0 161895 1 35755 0 species 1 561 Corynebacterium kutscheri 753 Corynebacterium terpenotabidum 89154 0 species 1 108486 0 species 1 1226 Corynebacterium falsenii species 152794 0 1 1093 Corynebacterium efficiens species 43770 0 1 2244 Corynebacterium striatum 1 species 349751 0 Corynebacterium marinum 1094 Corynebacterium humireducens 1071 1 species 0 1223514 697 Corynebacterium camporealensis 0 161896 species 1 258224 0 species 1 541 Corynebacterium resistens 1671 no rank 2624378 0 2 species 0 702967 1 695 Corynebacterium sp. NML98-0116 1 species 0 1487956 Corynebacterium sp. ATCC 6931 976 0 1697 species 1 656 Corynebacterium ammoniagenes Corynebacterium testudinoris 804 1 species 0 136857 1 species 0 1231000 Corynebacterium lactis 769 6 0 84995 class 1 Rubrobacteria 2496 24 66 2472 Rubrobacterales 1 order 0 84996 5 14 2406 Rubrobacteraceae 84997 0 1 family 4 2392 43 Rubrobacter genus 1 0 42255 3 1420 Rubrobacter xylanophilus species 0 49319 1 Rubrobacter radiotolerans 929 1 0 42256 species 7 0 84992 1 class Acidimicrobiia 5 2285 1 order 0 84993 6 65 2280 Acidimicrobiales Acidimicrobiaceae 15 347 3 1 family 0 84994 Acidimicrobium 1 332 2 0 53634 1 genus 53635 0 species 1 331 Acidimicrobium ferrooxidans 2 2448023 0 family 1868 1868 19 Ilumatobacter 0 682522 genus 1 2 1 species 0 467094 Ilumatobacter coccineus 1849 32 class 1 84998 0 Coriobacteriia 105874 731 0 1643822 order 1 18 69517 832 Eggerthellales 68685 16514 Eggerthellaceae 0 1643826 family 1 17 2 0 84162 genus 1 Cryptobacterium 964 1 1 species 0 84163 Cryptobacterium curtum 963 1 genus 0 84108 2 11 5702 Slackia Slackia heliotrinireducens 5691 1 species 84110 0 0 79603 genus 1 2 2912 3 Denitrobacterium 2909 Denitrobacterium detoxificans 0 79604 species 1 7070 10 Adlercreutzia genus 1 0 447020 2 1 species 0 446660 Adlercreutzia equolifaciens 7060 3 genus 1 644652 0 Gordonibacter 13678 105 1 1841863 0 species Gordonibacter massiliensis 6559 7014 Gordonibacter urolithinfaciens 1335613 0 species 1 3 1 genus 0 84111 Eggerthella 213 19414 no rank 2648737 0 1 4118 1 species 502558 0 Eggerthella sp. YY7918 4118 15083 Eggerthella lenta species 84112 0 1 2 0 1981050 1 genus Phoenicibacter 2 2431 Phoenicibacter massiliensis 2429 1 1944646 0 species 401 35626 Coriobacteriales 0 84999 1 order 13 18426 246 Atopobiaceae family 1 0 1643824 6 2767353 0 genus 1 1865 1865 Atopobium parvulum 1382 0 species 1 0 133925 genus 1 4 16315 222 Olsenella 3372 1 no rank 0 2638792 Olsenella sp. oral taxon 807 3372 1 species 712411 0 Olsenella uli 4874 1 species 0 133926 1 species 1805478 0 Olsenella sp. Marseille-P2300 7847 6 84107 0 1 family Coriobacteriaceae 1081 16799 Collinsella 10009 85 2 0 102106 genus 1 9924 Collinsella aerofaciens species 0 74426 1 Coriobacterium 13 2220 2 0 33870 1 genus Coriobacterium glomerans 2207 1 species 33871 0 no rank 0 84113 1 3489 1 1531429 0 species Coriobacteriaceae bacterium 68-1-3 3489 445 no rank 0 1859062 2 Thermobaculum 445 22 2 0 262406 genus 1 Thermobaculum terrenum 423 1 species 0 166501 0 1297 phylum 36 35854 36 1 class 0 188787 Deinococci 249 35854 1611 3 0 2762275 order 1611 12 Trueperaceae family 1 0 332247 3 Truepera 1599 17 2 0 332248 genus 1 1 species 0 332249 Truepera radiovictrix 1582 Deinococcales 229 20135 15 118964 0 1 order Deinococcaceae 152 19906 14 1 family 0 183710 0 1298 genus 1 13 19754 326 Deinococcus species 0 502394 1 1979 Deinococcus gobiensis 1460 Deinococcus puniceus 1182568 0 species 1 species 0 1299 1 1817 Deinococcus radiodurans Deinococcus maricopensis 1467 1 0 309887 species 1 species 310783 0 Deinococcus deserti 1533 species 0 432329 1 1105 Deinococcus peraridilitoris Deinococcus soli Cha et al. 2016 1757 1 0 1309411 species Deinococcus actinosclerus 1724 1 species 0 1768108 species 1182571 0 1 2220 Deinococcus swuensis Deinococcus geothermalis 1255 1 species 0 68909 0 55148 species 1 1651 Deinococcus proteolyticus no rank 2623546 0 1 1460 1 0 2080419 species Deinococcus sp. NW-56 1460 17 0 68933 order 1 Thermales 13859 202 16 1 family 188786 0 Thermaceae 87 13657 2 genus 1 0 186191 Marinithermus 775 4 0 186192 species 1 771 Marinithermus hydrothermalis 18 1624 Oceanithermus 0 208447 1 genus 2 1 species 0 187137 Oceanithermus profundus 1606 3 1 genus 0 65551 Meiothermus 13 3348 0 277 species 1 1859 Meiothermus ruber 1 0 52022 species Meiothermus silvanus 1476 8 genus 1 0 270 Thermus 7823 246 species 0 271 1 1055 Thermus aquaticus species 0 56956 1 800 Thermus brockianus Thermus parvatiensis 718 1 0 456163 species Thermus scotoductus 1132 1 species 37636 0 842 no rank 0 2619321 1 species 1111069 0 1 842 Thermus sp. CCB_US3_UF1 Thermus thermophilus 1793 1 species 0 274 Thermus oshimai 1237 1 0 56957 species Tenericutes 95242 18 102 0 544448 phylum 1 97 0 31969 1 class Mollicutes 62 86557 Entomoplasmatales 39116 30 39 order 1 0 186328 15 12438 Entomoplasmataceae 0 33925 1 family 14 87 3673 Entomoplasma 1 genus 0 46238 5 1 species 81459 0 Entomoplasma melaleucae 1494 1 0 214888 species Entomoplasma luminosum 799 species 74700 0 1 439 Entomoplasma freundtii 215578 0 species 1 854 Entomoplasma somnilux 398 8750 Mesoplasma 1 genus 0 46239 8 1155 Mesoplasma lactucae 0 138853 species 1 1016 Mesoplasma entomophilum species 2149 0 1 1 324078 0 species Mesoplasma coleopterae 908 species 0 225999 1 1108 Mesoplasma syrphidae 0 2151 species 1 1911 Mesoplasma florum 0 216427 species 1 1138 Mesoplasma chauliocola 1116 Mesoplasma tabanidae species 0 219745 1 family 1 2131 0 24 26648 86 Spiroplasmataceae 23 0 2132 1 genus Spiroplasma 908 26562 Spiroplasma cantharicola 1136 1 species 0 362837 1575 Spiroplasma turonicum 0 216946 species 1 species 0 47834 1 1315 Spiroplasma kunkelii Spiroplasma syrphidicola 774 1 species 0 216945 1540 Spiroplasma floricola 0 216937 species 1 Spiroplasma chrysopicola 807 1 species 0 216933 Spiroplasma mirum 911 1 0 2144 species 1167 Spiroplasma eriocheiris species 0 315358 1 1 0 216936 species Spiroplasma diminutum 1522 1522 Spiroplasma helicoides species 0 216938 1 Spiroplasma culicicola 1155 1 0 216935 species Spiroplasma clarkii 1228 1 species 0 2139 1 0 2145 species Spiroplasma taiwanense 1366 917 Spiroplasma atrichopogonis species 0 1114980 1 1 0 2136 species Spiroplasma monobiae 1090 Spiroplasma corruscae 1311 1 0 216934 species no rank 2637901 0 2 2326 1163 Spiroplasma sp. TU-14 0 1898044 species 1 0 1914410 species 1 1163 Spiroplasma sp. NBRC 100390 species 0 216944 1 791 Spiroplasma sabaudiense Spiroplasma apis 849 1 species 0 2137 943 Spiroplasma citri species 0 2133 1 0 216942 species 1 1409 Spiroplasma litorale 13 order 1 0 186329 Acholeplasmatales 11648 14 12 0 2146 1 family Acholeplasmataceae 80 11634 genus 1 0 33926 6 3415 64 Candidatus Phytoplasma 1893 3 species group 85620 0 100379 0 species 1 794 Onion yellows phytoplasma 1 0 229545 species Aster yellows witches'-broom phytoplasma 560 539 Maize bushy stunt phytoplasma species 0 202462 1 0 85632 species group 1 580 1 species 0 59748 Candidatus Phytoplasma australiense 580 1 species group 85630 0 878 Candidatus Phytoplasma mali 878 1 species 0 37692 genus 1 0 2147 5 8139 97 Acholeplasma species 0 61635 1 1259 Acholeplasma brassicae Acholeplasma oculi 2052 1 species 0 35623 species 2148 0 1 1884 Acholeplasma laidlawii 2847 Acholeplasma palmae species 38986 0 1 44 order 1 2085 0 Mycoplasmatales 35731 20 0 2092 1 family 43 52 35711 Mycoplasmataceae 2046 7 Ureaplasma 2129 0 genus 1 3 species 0 2130 1 1070 Ureaplasma urealyticum 969 Ureaplasma parvum 134821 0 species 1 genus 2767358 0 12 10947 0 48003 species 1 731 Mycoplasma pullorum 1111 Mycoplasma canis 0 29555 species 1 1 species 0 2115 Mycoplasma fermentans 1034 Mycoplasma bovis 1304 1 0 28903 species 171284 0 species 1 1049 Mycoplasma cynos 1 29553 0 species Mycoplasma bovirhinis 710 1 0 2113 species Mycoplasma californicum 564 Mycoplasma agalactiae 884 1 species 0 2110 Mycoplasma synoviae 837 1 species 0 2109 886 Mycoplasma pulmonis 0 2107 species 1 860 Mycoplasma bovigenitalium 0 2112 species 1 Mycoplasma arginini 977 1 0 2094 species 27 1 genus 0 2093 Mycoplasma 446 22666 species 65123 0 1 143 Mycoplasma wenyonii Mycoplasma gallisepticum 947 1 0 2096 species 384 Mycoplasma pneumoniae 0 2104 species 1 species 0 29501 1 117 Mycoplasma haemofelis Mycoplasma dispar 456 1 species 86660 0 865 Mycoplasma hyorhinis species 2100 0 1 Mycoplasma putrefaciens 859 1 0 2123 species species 0 2111 1 746 Mycoplasma arthritidis 954 Mycoplasma canadense species 0 29554 1 763 Mycoplasma crocodyli species 0 50052 1 398 Mycoplasma genitalium 0 2097 species 1 1 2098 0 species Mycoplasma hominis 1808 745 no rank 2683645 0 1 745 Mycoplasma sp. (ex Biomphalaria glabrata) 0 1749074 species 1 0 171632 species 1 136 Mycoplasma ovis 3 species group 656088 0 6486 species 2095 0 1 1729 Mycoplasma capricolum Mycoplasma leachii 1681 1 2105 0 species 1 0 2102 species Mycoplasma mycoides 3076 543 Mycoplasma bovoculi 0 45362 species 1 species 0 57372 1 306 Mycoplasma suis 1467 Mycoplasma yeatsii 0 51365 species 1 0 28227 species 1 1374 Mycoplasma penetrans 0 2118 species 1 1397 Mycoplasma mobile 149 Mycoplasma haemocanis species 0 136241 1 0 2099 species 1 608 Mycoplasma hyopneumoniae Mycoplasma flocculare 271 1 species 0 2128 1 984991 0 species Mycoplasma parvum 298 no rank 2799557 0 2 2784 2 1 genus 1912503 0 Candidatus Izimaplasma 8 2784 1 0 2624196 no rank 2776 0 1541959 species 1 2776 Candidatus Izimaplasma sp. HR1 no rank 713063 0 2 5883 2720 Tenericutes bacterium MO-XQ 1911684 0 species 1 1 1911683 0 species Tenericutes bacterium MZ-XQ 3163 67574 phylum 0 32066 25 67574 33 Fusobacteriia class 1 0 203490 25 67541 67 Fusobacteriales 0 203491 order 1 24 57 50771 Fusobacteriaceae 203492 0 1 family 12 0 167639 genus 1 2 2188 1 Ilyobacter 2187 Ilyobacter polytropus species 167642 0 1 Fusobacterium 48526 148 9 genus 1 0 848 7267 Fusobacterium varium 856 0 species 1 0 851 species 1 15176 Fusobacterium nucleatum species 849 0 1 1843 Fusobacterium gonidiaformans 1752 Fusobacterium necrophorum 0 859 species 1 5011 Fusobacterium hwasookii species 1583098 0 1 0 860 species 1 10408 Fusobacterium periodonticum 3397 Fusobacterium mortiferum 0 850 species 1 Fusobacterium ulcerans 3524 1 861 0 species 11 0 1129771 1 family Leptotrichiaceae 27 16703 Streptobacillus 4 2613 2 1 genus 0 34104 species 0 34105 1 2609 Streptobacillus moniliformis 0 32068 1 genus 2 4 2534 Sebaldella Sebaldella termitidis 2530 1 species 826 0 2576 1 genus 168808 0 1 species 0 187101 Sneathia amnii 2576 8953 16 Leptotrichia genus 1 32067 0 5 6350 3 no rank 0 2633022 2209 Leptotrichia sp. oral taxon 847 0 1785996 species 1 1 0 712368 species Leptotrichia sp. oral taxon 498 1774 2367 Leptotrichia sp. oral taxon 212 species 0 712357 1 1 0 40542 species Leptotrichia buccalis 2587 7270 13 phylum 40117 0 0 203693 class 1 13 7270 30 Nitrospira Nitrospirales 7240 39 12 order 1 0 189778 Nitrospiraceae 7201 25 11 family 1 0 189779 1178 1 28261 0 genus species 0 28262 1 1178 Thermodesulfovibrio yellowstonii 0 1234 genus 1 5 4386 16 Nitrospira 1 330214 0 species Nitrospira defluvii 758 species 0 1715989 1 1060 Candidatus Nitrospira inopinata Nitrospira japonica 1137 1 species 0 1325564 Nitrospira moscoviensis 1415 1 species 42253 0 4 1612 Leptospirillum 179 0 1 genus 4 389 0 655606 species group 1 389 Leptospirillum ferrooxidans species 0 180 1 491 1 species group 261385 0 species 0 1660083 1 491 Leptospirillum sp. Group II 'CF-1' 0 261386 species group 1 728 1 178606 0 species Leptospirillum ferriphilum 728 0 57723 1 phylum 21 3 13305 Acidobacteria 3 1 class 1562566 0 Blastocatellia 10 1040 1 genus 0 458032 2 7 1030 Chloracidobacterium 1023 Chloracidobacterium thermophilum 458033 0 species 1 Acidobacteriia 189 12262 17 0 204432 1 class 4 1 order 332160 0 Solibacterales 60 2784 24 2724 Solibacteraceae 1 family 0 332161 3 0 332162 genus 1 2 2700 14 Candidatus Solibacter Candidatus Solibacter usitatus 2686 1 species 0 332163 1 order 204433 0 12 128 9289 Acidobacteriales 9161 92 Acidobacteriaceae 204434 0 family 1 11 Acidobacterium 18 1898 2 0 33973 1 genus 1880 Acidobacterium capsulatum 0 33075 species 1 17 3262 Granulicella 0 940557 1 genus 3 Granulicella tundricola 1504 1 940615 0 species 940614 0 species 1 1741 Granulicella mallensis 1449 16 Candidatus Koribacter 0 658061 genus 1 2 1433 Candidatus Koribacter versatilis 658062 0 species 1 Terriglobus 2460 7 3 genus 1 392733 0 1 0 870903 species Terriglobus saanensis 1038 species 0 392734 1 1415 Terriglobus roseus 6481244 383 clade 0 1783270 566 phylum 456828 0 2 2 1 genus 0 456826 Candidatus Cloacimonas 9 566 557 Candidatus Cloacimonas acidaminovorans species 0 456827 1 142182 0 phylum 8 5588 Gemmatimonadetes 5588 117 8 class 1 0 219685 Gemmatimonadales 111 5471 7 219686 0 1 order 60 5360 Gemmatimonadaceae 1 family 0 219687 6 1 genus 0 1706036 2 20 2380 Gemmatirosa Gemmatirosa kalamazoonesis 2360 1 species 0 861299 Gemmatimonas 2920 83 3 genus 1 173479 0 1799 Gemmatimonas aurantiaca species 0 173480 1 species 0 1379270 1 1038 Gemmatimonas phototrophica clade 68336 0 368 6471575 339 phylum 1 0 976 Bacteroidetes 6449016 117 class 1 0 1937959 8 3736 5 Saprospiria 3731 7 Saprospirales order 1 1936988 0 7 3 1 family 0 89374 Saprospiraceae 2 1291 genus 1 0 1007 2 1289 1 Saprospira 1 species 0 1008 Saprospira grandis 1288 0 1937961 1 family 3 2 2433 Haliscomenobacteraceae 0 2349 1 genus 2 11 2431 Haliscomenobacter species 0 2350 1 2420 Haliscomenobacter hydrossis 122 6710 Bacteroidetes Order II. Incertae sedis 0 1100069 1 order 7 6 0 563843 family 1 Rhodothermaceae 6588 60 2807 1 no rank 1196022 0 Rhodothermaceae bacterium RA 2807 1 species 0 1779382 2 genus 1 29548 0 Rhodothermus 2629 12 2617 Rhodothermus marinus 0 29549 species 1 0 146918 genus 1 2 1092 8 Salinibacter 1084 Salinibacter ruber species 0 146919 1 Cytophagia 201 101695 59 1 class 768503 0 Cytophagales 101494 438 58 0 768507 order 1 3 0 1937968 family 1 Bernardetiaceae 2801 2 2 2799 Bernardetia 1937972 0 1 genus 2 1 species 999 0 Bernardetia litoralis 2797 17 0 89373 1 family Cytophagaceae 67 27549 Spirosoma 53 11054 6 0 107 1 genus 1 0 564064 species Spirosoma rigui 1738 2879 Spirosoma sp. HA7 0 2057025 species 1 2358 Spirosoma montaniterrae species 1178516 0 1 species 0 1211326 1 2235 Spirosoma aerolatum 0 1379870 species 1 1791 Spirosoma radiotolerans Cytophaga 6 3159 2 1 genus 0 978 Cytophaga hutchinsonii 3153 1 species 0 985 Leadbetterella 14 3137 2 1 genus 0 319458 3123 Leadbetterella byssophila species 0 316068 1 2 0 861914 1 genus Fibrella 1 3692 1 2620963 0 no rank 3691 1 1834519 0 species Fibrella sp. ES10-3-2-2 3691 2 genus 1 0 105 Runella 2467 19 1 0 106 species Runella slithyformis 2448 2 genus 1 120831 0 Dyadobacter 3973 9 Dyadobacter fermentans 3964 1 0 94254 species 0 1853232 1 family 16 107 45239 Hymenobacteraceae 25260 181 Hymenobacter genus 1 0 89966 8 no rank 2615202 0 5 17801 1 0 1385663 species Hymenobacter sp. DG25A 2616 0 1385664 species 1 3227 Hymenobacter sp. DG25B species 0 1356852 1 4321 Hymenobacter sp. APR13 species 0 1484118 1 4116 Hymenobacter sp. PAMC 26628 1 0 1484116 species Hymenobacter sp. PAMC 26554 3521 1 species 0 1446467 Hymenobacter swuensis 3135 1 0 1411621 species Hymenobacter sedentarius 4143 Pontibacter 18 9875 3 0 323449 1 genus 4250 Pontibacter akesuensis 0 388950 species 1 0 400092 species 1 5607 Pontibacter korlensis 4 0 1379908 1 genus Rufibacter 55 9997 Rufibacter tibetensis 4180 1 0 512763 species 5762 0 2639626 no rank 2 species 0 1379909 1 3363 Rufibacter sp. DG15C species 0 1379910 1 2399 Rufibacter sp. DG31D 3 family 1 200667 0 Flammeovirgaceae 8177 13 3065 1 340671 0 no rank 1 0 1257021 species Flammeovirgaceae bacterium 311 3065 5099 genus 59739 0 1 no rank 2637820 0 1 5099 5099 Flammeovirga sp. MY04 species 1191459 0 1 2289 0 2762301 family 2 genus 1 0 869806 2 2289 14 Marivirga 1 0 1006 species Marivirga tractuosa 2275 3 0 1501348 family 1 Amoebophilaceae 1345 4 1 281119 0 genus 587 587 Candidatus Amoebophilus asiaticus 0 281120 species 1 754 1 273135 0 genus 754 1 no rank 2641185 0 1 species 249402 0 Cardinium endosymbiont of Encarsia pergandiella 754 family 1 0 1853234 3 4721 1 Persicobacteraceae Persicobacter 4720 5 2 0 59740 genus 1 4715 1 no rank 2664020 0 4715 Persicobacter sp. JZB09 0 1085624 species 1 47 8935 Cyclobacteriaceae 1 family 563798 0 10 genus 1 0 232244 2 1832 1 Belliella 0 232259 species 1 1831 Belliella baltica Algoriphagus 1733 5 2 0 246875 genus 1 1 1727163 0 species Algoriphagus sp. M8-2 1728 Cyclobacterium 23 3092 3 1 genus 68288 0 1 0 104 species Cyclobacterium marinum 1429 0 320787 species 1 1640 Cyclobacterium amurskyense Echinicola 2231 2 2 390846 0 genus 1 2229 Echinicola vietnamensis 0 390884 species 1 73 1 class 0 200643 Bacteroidia 193 5961960 60 order 1 0 171549 Bacteroidales 5948531 3056 4 171551 0 family 1 Porphyromonadaceae 22829 52 3 1 genus 0 836 Porphyromonas 36 22777 1 species 0 837 Porphyromonas gingivalis 15579 28123 0 species 1 7162 Porphyromonas asaccharolytica 1 185291 0 no rank 3041 Bacteroidales bacterium CF 3041 1 species 0 1400053 0 171552 family 1 11 1418695 225 Prevotellaceae Prevotella 2613 1418470 10 1 genus 838 0 Prevotella denticola 110887 1 0 28129 species Prevotella fusca 174946 1 species 0 589436 1 species 839 0 Prevotella ruminicola 195819 Prevotella intermedia 328972 1 species 0 28131 1 0 52227 species Prevotella dentalis 119894 1 0 1177574 species Prevotella jejuni 178986 207198 Prevotella melaninogenica 0 28132 species 1 38140 0 2638335 no rank 1 0 652716 species 1 38140 Prevotella sp. oral taxon 299 61015 Prevotella enoeca 0 76123 species 1 232179 20 Barnesiellaceae 0 2005519 family 1 3 genus 1 0 397864 2 232159 113 Barnesiella species 0 397865 1 232046 Barnesiella viscericola 1528757 5 no rank 0 333046 1526127 3 909656 0 genus Bacteroides salanitronis 198582 1 0 376805 species species 0 357276 1 274544 Bacteroides dorei 1053001 Bacteroides vulgatus 0 821 species 1 2 genus 1 0 511434 Candidatus Azobacteroides 2630 9 species 0 511435 1 2621 Candidatus Azobacteroides pseudotrichonymphae 104873 1853231 0 family 2 genus 1 283168 0 2 104873 10 Odoribacter 104863 Odoribacter splanchnicus species 0 28118 1 7 0 2005525 family 1 Tannerellaceae 503822 149 51282 103 Tannerella genus 1 195950 0 3 0 28112 species 1 40258 Tannerella forsythia 10921 2620507 0 no rank 1 1 species 0 712710 Tannerella sp. oral taxon HOT-286 10921 3 1 genus 375288 0 Parabacteroides 219 452391 Parabacteroides distasonis 123306 1 0 823 species 2649774 0 no rank 1 328866 1 species 2025876 0 Parabacteroides sp. CT06 328866 116 1781314 Bacteroidaceae 0 815 1 family 11 Bacteroides 101711 1781198 10 1 genus 0 816 Bacteroides caccae 360797 1 0 47678 species 183899 Bacteroides thetaiotaomicron 0 818 species 1 species 0 28116 1 292424 Bacteroides ovatus 1 species 0 1796613 Bacteroides caecimuris 207128 73111 Bacteroides zoogleoformans 0 28119 species 1 1 0 246787 species Bacteroides cellulosilyticus 150682 Bacteroides heparinolyticus 57099 1 species 0 28113 1 species 0 817 Bacteroides fragilis 287280 species 0 290053 1 67067 Bacteroides helcogenes 5 1 family 0 171550 Rikenellaceae 20 303187 2 1 genus 0 239759 Alistipes 46 298830 species 0 214856 1 298784 Alistipes finegoldii 2 genus 1 1611681 0 Mucinivorans 4337 7 4330 Mucinivorans hirudinis 1433126 0 species 1 1 family 0 2005520 7 4 34568 Dysgonamonadaceae genus 1 307628 0 2 14588 33 Petrimonas species 0 1642646 1 14555 Petrimonas mucosa genus 1 0 294702 2 11340 17 Proteiniphilum Proteiniphilum saccharofermentans 11323 1 species 1642647 0 2 1 genus 0 1784836 Fermentimonas 26 8636 8610 Fermentimonas caenicola species 0 1562970 1 2005523 0 family 1 3 12210 67 Paludibacteraceae 2 0 346096 1 genus Paludibacter 17 12143 1 species 0 185300 Paludibacter propionicigenes 12126 Marinilabiliales 13236 9 12 order 1 0 1970189 0 1573805 1 family 2 11 3440 Marinifilaceae 2060722 0 genus 1 3429 species 0 1717717 1 3429 Marinifilaceae bacterium SPP2 3 1 family 0 558415 Marinilabiliaceae 70 3073 genus 1 0 1193324 2 3003 7 Alkalitalea 1 species 0 889453 Alkalitalea saponilacus 2996 3 1 family 0 1471398 Prolixibacteraceae 22 4988 2 genus 1 0 1471399 Draconibacterium 4966 46 Draconibacterium orientale 4920 1 species 0 1168034 3 1 family 0 1970190 Salinivirgaceae 64 1726 Salinivirga 2 1662 2 1 genus 0 1970191 species 0 1307839 1 1660 Salinivirga cyanobacteriivorans Flavobacteriia 304808 97 152 class 1 117743 0 151 order 1 0 200644 Flavobacteriales 304711 282 family 1 0 1755828 3 467 1 Ichthyobacteriaceae 2 466 Ichthyobacterium 1 genus 0 1755829 2 242600 0 species 1 464 Ichthyobacterium seriolicida 1661 0 1333713 family 2 1661 1 Owenweeksia genus 1 0 267986 2 species 253245 0 1 1660 Owenweeksia hongkongensis 106 1 family 0 49546 Flavobacteriaceae 3101 200398 3336 genus 417127 0 1 Zunongwangia profunda 3336 1 species 0 398743 2146 6 Salegentibacter 0 143222 genus 1 2 2140 0 2633436 no rank 1 1 0 1729720 species Salegentibacter sp. T436 2140 Lacinutrix 4926 6 4 0 291183 genus 1 2790 0 2647285 no rank 2 Lacinutrix sp. 5H-3-7-4 1699 1 species 0 983544 1 0 2057808 species Lacinutrix sp. Bg11-31 1091 1 0 1486034 species Lacinutrix venerupis 2130 4 2049 Wenyingzhuangia 0 1518147 1 genus 2 species 0 1790137 1 2045 Wenyingzhuangia fucanilytica 2 0 1204360 1 genus Siansivirga 1 1714 species 0 762954 1 1713 Siansivirga zeaxanthinifaciens 3040 1 Winogradskyella 0 286104 genus 1 3 2 2615021 0 no rank 3039 Winogradskyella sp. J14-2 1496 1 0 1936080 species Winogradskyella sp. PG-2 1543 1 species 0 754409 0 261827 genus 1 1592 Algibacter alginicilyticus 1592 1 species 0 1736674 1 1176327 0 genus 985 1 no rank 0 2636237 985 species 0 2094025 1 985 Aureitalea sp. RR4-38 1 genus 104267 0 5 9 7874 Tenacibaculum Tenacibaculum maritimum 1882 1 species 0 107401 0 1850252 species 1 1833 Tenacibaculum todarodis Tenacibaculum jejuense 2413 1 species 584609 0 Tenacibaculum dicentrarchi 1737 1 species 0 669041 2000 1 genus 389486 0 1 no rank 2648869 0 2000 1 species 1453352 0 Sediminicola sp. YIK13 2000 405 51072 Capnocytophaga 0 1016 1 genus 15 2554 Capnocytophaga ochracea 0 1018 species 1 6 0 2640652 no rank 15424 species 0 1945657 1 1964 Capnocytophaga sp. H2931 Capnocytophaga sp. oral taxon 323 2405 1 0 1705617 species species 1316596 0 1 3826 Capnocytophaga sp. oral taxon 878 species 0 1316593 1 2616 Capnocytophaga sp. oral taxon 864 species 1945658 0 1 1765 Capnocytophaga sp. H4358 Capnocytophaga sp. ChDC OS43 2848 1 species 209053 0 4979 Capnocytophaga leadbetteri species 0 327575 1 1 species 1017 0 Capnocytophaga gingivalis 10280 species 1848904 0 1 4011 Capnocytophaga stomatis Capnocytophaga cynodegmi 1810 1 species 28189 0 1 species 0 45243 Capnocytophaga haemolytica 2758 Capnocytophaga sputigena 5005 1 0 1019 species species 0 28188 1 3846 Capnocytophaga canimorsus 6 0 52959 genus 1 Polaribacter 9609 123 Polaribacter vadi 2461 1 0 1774273 species 3 no rank 0 196858 4825 1 0 313598 species Polaribacter sp. MED152 1704 1 species 2058137 0 Polaribacter sp. ALD11 1679 0 1529069 species 1 1442 Polaribacter sp. BM10 species 0 996801 1 2200 Polaribacter reichenbachii genus 0 178469 1 1467 1 species 0 616991 Arenibacter algicola 1467 19071 137 Myroides genus 1 0 76831 5 2760 Myroides profundi 0 480520 species 1 5047 2642485 0 no rank 2 0 1458492 species 1 2556 Myroides sp. ZB35 1 species 0 1583100 Myroides sp. A21 2491 1 76832 0 species Myroides odoratimimus 11127 0 225842 genus 1 3 2040 15 Formosa no rank 0 2644710 2 2025 838 Formosa sp. Hel1_33_131 species 0 1336794 1 Formosa sp. Hel3_A1_48 1187 1 0 1336795 species 2 genus 1 0 1209327 Flavivirga 2037 1 Flavivirga eckloniae 2036 1 species 1803846 0 2 genus 1 0 153265 Aequorivita 1225 6 1219 Aequorivita sublithincola 0 101385 species 1 9 genus 1 0 237 Flavobacterium 22883 158 55197 0 species 1 2237 Flavobacterium branchiophilum 2947 Flavobacterium commune 0 1306519 species 1 species 0 996 1 3311 Flavobacterium columnare Flavobacterium johnsoniae 6308 1 0 986 species 1 species 0 96345 Flavobacterium psychrophilum 2437 2308 Flavobacterium gilvum 1492737 0 species 1 species 0 1763534 1 1777 Flavobacterium crassostreae 1 0 312277 species Flavobacterium indicum 1400 2638 0 2700084 genus 1 2638 Lutibacter sp. LPB0138 1850246 0 species 1 1 genus 0 216431 2 1 1862 Croceibacter Croceibacter atlanticus 1861 1 0 313588 species 13 6374 Cellulophaga 0 104264 1 genus 4 species 76594 0 1 2756 Cellulophaga baltica species 0 979 1 2192 Cellulophaga lytica 1413 Cellulophaga algicola 0 59600 species 1 Gramella 10883 4 5 0 292691 genus 1 3278 Gramella forsetii 0 411153 species 1 3426 Gramella flava species 0 1486245 1 species 0 2126553 1 2444 Gramella sp. SH35 0 1913577 species 1 1731 Gramella sp. LPB0144 1523 0 83612 genus 1 species 0 57029 1 1523 Psychroflexus torquis 3371 2 0 61432 no rank 1777 Flavobacteriaceae bacterium 3519-10 species 0 531844 1 Flavobacteriaceae bacterium UJ101 1594 1 0 1150389 species 1 genus 358023 0 1418 1 species 0 1622118 Lutibacter profundi 1418 1 393005 0 genus 1871 1871 Tamlana sp. UJ94 0 2069432 species 1 4 1 genus 0 326319 Dokdonia 9 3936 2083 2615033 0 no rank 2 Dokdonia sp. 4H-3-7-5 1430 1 species 0 983548 653 Dokdonia sp. MED134 0 313590 species 1 1844 Dokdonia donghaensis species 0 326320 1 2 112040 0 genus 1 Zobellia 2068 2 1 species 0 63186 Zobellia galactanivorans 2066 2058 0 1649495 genus 1 2622645 0 no rank 1 2058 Seonamhaeicola sp. S2-3 2058 1 0 1936081 species 252306 0 1 genus 2 2 2418 Robiginitalea 2416 Robiginitalea biformata 0 252307 species 1 genus 1 0 111500 3 2938 10 Muricauda 1 0 111501 species Muricauda ruestringensis 1846 species 0 516051 1 1082 Muricauda lutaonensis 41 5732 Nonlabens 0 363408 1 genus 5 Nonlabens dokdonensis 1337 1 species 328515 0 2653 2 no rank 2615035 0 Nonlabens sp. MB-3u-79 1106 1 0 2058134 species species 0 1476901 1 1547 Nonlabens sp. MIC269 1 319236 0 species Nonlabens sediminis 1701 genus 1 0 252356 5 7885 7 Maribacter 1600 Maribacter cobaltidurans species 0 1178778 1 no rank 2615042 0 3 6278 1490 Maribacter sp. HTCC2170 0 313603 species 1 Maribacter sp. 1_2014MBL_MicDiv 3076 1 species 0 1644130 Maribacter sp. T28 1712 1 species 0 1836467 1256 0 336276 genus 1 1256 0 2615019 no rank 1 species 0 2058135 1 1256 Olleya sp. Bg11-27 2914 2 Crocinitomicaceae family 1 0 1853230 3 1 genus 0 332102 2 9 2912 Fluviicola Fluviicola taffensis 2903 1 0 191579 species Cryomorphaceae 2 1 family 0 246874 4 313602 0 no rank 1000 2 genus 1 0 1940138 Candidatus Walczuchella 317 5 Candidatus Walczuchella monophlebidarum 312 1 species 0 1415657 Candidatus Sulcia 10 683 2 0 336809 1 genus 673 Candidatus Sulcia muelleri species 0 336810 1 21 family 2762318 0 93545 0 34084 genus 1 8125 8125 Riemerella anatipestifer species 0 34085 1 47135 10 no rank 0 2782232 37345 185 Chryseobacterium 0 59732 genus 1 9 1 species 1685010 0 Chryseobacterium glaciei 3385 0 253 species 1 7607 Chryseobacterium indologenes 1 species 0 1324352 Chryseobacterium gallinarum 10106 9763 3 0 2593645 no rank Chryseobacterium sp. T16E-39 3261 1 0 2015076 species 1 species 0 1721091 Chryseobacterium sp. IHB B 17019 2747 3755 Chryseobacterium sp. StRB126 0 878220 species 1 2626 Chryseobacterium piperi species 0 558152 1 Chryseobacterium camelliae 3673 1 species 0 1265445 0 2782228 genus 1 9790 species 0 536441 1 9790 Chryseobacterium taklimakanense 19366 87 Ornithobacterium genus 1 0 28250 2 1 species 0 28251 Ornithobacterium rhinotracheale 19279 6 0 308865 1 genus Elizabethkingia 152 17449 Elizabethkingia genomosp. 4 2184 1 0 1756150 species 1 0 1756149 species Elizabethkingia genomosp. 3 2311 1 0 1117645 species Elizabethkingia anophelis 6604 1 0 172045 species Elizabethkingia miricola 3738 Elizabethkingia meningoseptica 2460 1 0 238 species 1470 12 Weeksella 0 1013 genus 1 2 1 species 1014 0 Weeksella virosa 1458 10 family 1 0 39782 Blattabacteriaceae 4442 4 0 34098 genus 1 9 4438 53 Blattabacterium 652 Blattabacterium cuenoti 0 1653831 species 1 no rank 2647581 0 6 3290 1 0 39768 species Blattabacterium sp. (Mastotermes darwiniensis) 593 595 Blattabacterium sp. (Blaberus giganteus) species 0 1186051 1 Blattabacterium sp. (Nauphoeta cinerea) 616 1 0 1316444 species Blattabacterium sp. (Blattella germanica) 835 1 species 0 624186 1 367488 0 species Blattabacterium sp. (Periplaneta americana) 308 0 367806 species 1 343 Blattabacterium sp. (Blatta orientalis) species 0 164514 1 443 Blattabacterium punctulatus 29 23278 Chitinophagia 1853228 0 1 class 15 14 1 order 1853229 0 Chitinophagales 47 23249 23202 319 Chitinophagaceae 563835 0 family 1 13 Niastella 4 2874 2 0 354354 1 genus 1 species 0 354356 Niastella koreensis 2870 79328 0 genus 1 3 7478 3 Chitinophaga 0 79329 species 1 4256 Chitinophaga pinensis 0 2029983 species 1 3219 Chitinophagaceae bacterium 13 2769 1 genus 649460 0 2769 Filimonas lacunae species 0 477680 1 2604 genus 1769012 0 1 2604 1 no rank 2636138 0 1 0 1850526 species Arachidicoccus sp. BS20 2604 3 1 genus 0 379899 Niabella 109 4764 1 species 0 446683 Niabella soli 2387 1 0 1176587 species Niabella ginsenosidivorans 2268 Flavisolibacter 2394 29 2 genus 1 0 398041 0 1492898 species 1 2365 Flavisolibacter tropicus 46712 35 Sphingobacteriia 0 117747 class 1 24 Sphingobacteriales 46677 40 23 order 1 0 200666 Sphingobacteriaceae 68 46637 22 84566 0 1 family 2834 4 Pseudopedobacter 0 1649482 genus 1 2 2830 Pseudopedobacter saltans species 151895 0 1 2839 1 84568 0 no rank Sphingobacteriaceae bacterium GW460-11-11-14-LB5 2839 1 0 1986952 species 6540 30 Mucilaginibacter 0 423349 genus 1 4 2617802 0 no rank 1 2082 species 0 1300914 1 2082 Mucilaginibacter sp. PAMC 26640 1 0 1234841 species Mucilaginibacter sp. BJC16-A31 1869 1 0 1550579 species Mucilaginibacter gotjawali 2559 41 15852 Sphingobacterium 1 genus 0 28453 6 2206 Sphingobacterium mizutaii 1010 0 species 1 4 0 2609468 no rank 13605 Sphingobacterium sp. G1-14 4056 1 0 2003121 species Sphingobacterium sp. ML3W 2942 1 1538644 0 species species 0 1933220 1 4091 Sphingobacterium sp. B29 1 0 743722 species Sphingobacterium sp. 21 2516 Solitalea 3301 3 2 0 929509 genus 1 Solitalea canadensis 3298 1 0 995 species genus 1 0 84567 6 15203 18 Pedobacter 2634 1 no rank 2628915 0 species 0 1727164 1 2634 Pedobacter sp. PACM 27299 Pedobacter steynii 3725 1 0 430522 species 0 984 species 1 2559 Pedobacter heparinus Pedobacter ginsengisoli 2926 1 363852 0 species 1 0 188932 species Pedobacter cryoconitis 3341 2909 7 1134404 0 phylum 2909 9 Ignavibacteria 795747 0 class 1 7 Ignavibacteriales 2900 46 6 0 795748 order 1 Ignavibacteriaceae 1527 1 2 0 795749 family 1 1526 795750 0 genus 1 0 591197 species 1 1526 Ignavibacterium album 1327 14 Melioribacteraceae 0 1334117 family 1 3 2 1134403 0 1 genus Melioribacter 20 1313 Melioribacter roseus 1293 1 0 1134405 species 19650 phylum 0 1090 22 22 1 class 0 191410 Chlorobia 124 19650 19526 309 Chlorobiales 191411 0 order 1 21 19217 161 Chlorobiaceae family 1 0 191412 20 Chloroherpeton 2 1132 2 1 genus 0 100715 1130 Chloroherpeton thalassium species 0 100716 1 8802 no rank 274493 0 8 Chlorobium 8 5215 5 0 1091 1 genus 0 1094 species 1 1067 Chlorobium phaeovibrioides Chlorobium limicola 1638 1 0 1092 species Chlorobium phaeobacteroides 1739 1 species 0 1096 763 Chlorobium chlorochromatii species 0 337090 1 6 3587 Pelodictyon 1 genus 0 1099 3 1691 Pelodictyon luteolum 0 1100 species 1 1890 Pelodictyon phaeoclathratiforme species 0 34090 1 Chlorobaculum 64 5479 4 1 genus 0 256319 1719 Chlorobaculum parvum species 0 274539 1 0 274537 species 1 2249 Chlorobaculum limnaeum 0 1097 species 1 1447 Chlorobaculum tepidum 5 1 genus 0 1101 Prosthecochloris 23 3643 0 1102 species 1 777 Prosthecochloris aestuarii 2632826 0 no rank 3 2843 Prosthecochloris sp. CIB 2401 847 1 species 0 1868325 Prosthecochloris sp. GSB1 1091 1 species 0 281093 Prosthecochloris sp. HL-130-GSB 905 1 1974213 0 species 3515 65842 0 phylum 5 Fibrobacteria 3515 4 5 0 204430 class 1 Fibrobacterales 3 3511 4 1 order 218872 0 Fibrobacteraceae 3508 2 3 0 204431 family 1 0 832 1 genus 2 3 3506 Fibrobacter species 833 0 1 3503 Fibrobacter succinogenes 0 1783257 clade 99 144372 phylum 0 203682 37 18977 27 203683 0 class 1 Planctomycetia 14435 123 order 2691354 0 6 2130 2691358 0 family 2 1034 genus 1 0 1676125 2 1034 3 Thermogutta 1031 Thermogutta terrifontis species 1331910 0 1 1096 4 family 2691357 0 2 genus 1 0 265488 Rhodopirellula 642 3 0 265606 species 1 639 Rhodopirellula baltica 454 3 Pirellula 123 0 genus 1 2 451 Pirellula staleyi species 125 0 1 4472 7 2691356 0 order 4472 40 Isosphaeraceae family 1 0 1763524 7 Isosphaera 9 1088 2 1 genus 0 127 1079 Isosphaera pallida species 0 128 1 1 genus 466152 0 2 2 1598 Singulisphaera 1596 Singulisphaera acidiphila 0 466153 species 1 1763521 0 1 genus 2 10 1746 Paludisphaera 1736 Paludisphaera borealis 1387353 0 species 1 960 3 order 2691355 0 Gemmataceae 8 960 3 0 1914233 1 family Gemmata 3 952 2 0 113 1 genus 949 2622970 0 no rank 1 species 0 1630693 1 949 Gemmata sp. SH-PL17 1 order 112 0 10 222 6750 Planctomycetales 1 family 0 126 9 26 6528 Planctomycetaceae 2 1 genus 1649490 0 Rubinisphaera 2 858 856 Rubinisphaera brasiliensis 119 0 species 1 Planctopirus 3 465 2 0 1649480 1 genus 0 120 species 1 462 Planctopirus limnophila genus 1936111 0 1 1440 Fuerstia marisgermanicae 1440 1 0 1891926 species 1 genus 0 118 3 33 3739 Planctomyces 3706 2 no rank 0 2648843 Planctomyces sp. SH-PL62 2253 1 species 1636152 0 1 0 1632864 species Planctomyces sp. SH-PL14 1453 1 class 0 666505 7 11 3295 Phycisphaerae order 1 0 666506 4 1724 25 Phycisphaerales 1 family 0 666507 3 11 1699 Phycisphaeraceae 2 genus 1 666508 0 Phycisphaera 1688 24 0 547188 species 1 1664 Phycisphaera mikurensis 1560 2483366 0 order 2 1560 2483367 0 family 2 1560 2 0 2483368 genus 1 0 1941349 species Phycisphaerae bacterium ST-PulAB-D4 806 754 Phycisphaerae bacterium L21-RPul-D3 1940790 0 species 1 3 0 2517206 class 1247 0 1127829 1 order 3 8 1247 Candidatus Brocadiales family 1 1127830 0 2 1239 26 Candidatus Brocadiaceae genus 0 380738 1 1213 Candidatus Kuenenia stuttgartiensis 1213 1 species 0 174633 25 204428 0 phylum 4780 Chlamydiia 4780 7 25 class 1 0 204429 14 0 51291 1 order Chlamydiales 6 3040 13 1 family 809 0 Chlamydiaceae 3 3034 3031 12 1113537 0 no rank Chlamydia 3031 21 12 genus 1 0 810 257 Chlamydia psittaci 0 83554 species 1 0 85991 species 1 126 Chlamydia pecorum species 0 83555 1 196 Chlamydia abortus species 83559 0 1 189 Chlamydia suis Chlamydia trachomatis 235 1 species 0 813 Chlamydia avium 169 1 0 1457141 species 1 0 83558 species Chlamydia pneumoniae 200 species 0 83556 1 784 Chlamydia felis 1 species 0 83560 Chlamydia muridarum 199 1 0 83557 species Chlamydia caviae 225 species 1457153 0 1 430 Chlamydia gallinacea 0 1963360 1 order 10 8 1733 Parachlamydiales 4 family 92713 0 1164 2 1 genus 0 83551 Parachlamydia 1 600 1 species 83552 0 Parachlamydia acanthamoebae 599 2 564 Candidatus Protochlamydia 1 genus 282132 0 2 Candidatus Protochlamydia naegleriophila 562 1 species 0 389348 3 0 92712 family 1 Simkaniaceae 263 8 2 1 genus 34093 0 Simkania 1 255 Simkania negevensis 254 1 0 83561 species 2 0 92714 family 1 Waddliaceae 298 1 1 genus 0 71666 297 1 0 71667 species Waddlia chondrophila 297 6224 3 256845 0 phylum 25 6224 Lentisphaeria 1 class 0 1313211 3 905 6199 Victivallales 0 278082 1 order 2 1 no rank 1674876 0 5294 Victivallales bacterium CCUG 44730 5294 1 species 0 2094242 74201 0 phylum 1 29 113194 20 Verrucomicrobia 801 5 class 0 1955630 0 717963 order 1 5 801 2 Methylacidiphilales family 1 0 717964 4 799 3 Methylacidiphilaceae 3 0 511745 1 genus Methylacidiphilum 2 796 Methylacidiphilum infernorum 369 1 species 0 511746 species 591154 0 1 425 Methylacidiphilum fumariolicum 1 class 0 414999 12 98 8874 Opitutae 7449 164 Opitutales order 1 415000 0 7 6 0 134623 1 family Opitutaceae 73 7285 2 genus 1 0 178440 Opitutus 1506 2 Opitutus terrae 1504 1 0 107709 species 2723 1 no rank 0 278955 1 794903 0 species Opitutaceae bacterium TAV5 2723 0 1961799 1 genus 2 42 2983 Lacunisphaera species 0 1838286 1 2941 Lacunisphaera limnophila Puniceicoccales 2 1327 4 1 order 415001 0 3 0 415002 family 1 Puniceicoccaceae 1325 7 2 0 442430 genus 1 Coraliomargarita 1318 8 Coraliomargarita akajimensis 1310 1 0 395922 species 219 3 Spartobacteria 0 134549 class 1 3 2 1 genus 0 134550 Candidatus Xiphinematobacter 6 216 1 2648876 0 no rank 210 210 Candidatus Xiphinematobacter sp. Idaho Grape species 1704307 0 1 3738 no rank 417295 0 2 1 species 0 2026799 Verrucomicrobia bacterium 2008 0 1637999 species 1 1730 Verrucomicrobia bacterium IMCC26134 99542 21 Verrucomicrobiae class 1 0 203494 6 order 1 48461 0 5 99521 31 Verrucomicrobiales 4 1 family 1647988 0 Akkermansiaceae 27 99490 genus 1 0 239934 3 99463 44 Akkermansia species 0 1679444 1 1724 Akkermansia glycaniphila 97695 Akkermansia muciniphila 0 239935 species 1 1197 phylum 134625 0 5 13 1197 Kiritimatiellae 0 1921781 1 class 5 9 1184 Kiritimatiellales 0 1921782 1 order 4 4 1175 Kiritimatiellaceae 0 1921783 1 family 3 0 1921784 1 genus 2 39 1171 Kiritimatiella 1 0 1307763 species Kiritimatiella glycovorans 1132 phylum 203691 0 57 69395 140 69395 Spirochaetia 0 203692 1 class 57 0 136 order 1 40 46980 645 Spirochaetales 22 0 137 1 family Spirochaetaceae 490 36465 1528 0 1911556 genus 1 Sediminispirochaeta smaragdinae 1528 1 species 0 55206 genus 1616789 0 1 1341 Salinispira pacifica 1341 1 0 1307761 species Sphaerochaeta 5075 8 4 genus 1 399320 0 Sphaerochaeta globosa 2225 1 1131703 0 species 1 0 273376 species Sphaerochaeta coccoides 1682 1160 Sphaerochaeta pleomorpha species 1131707 0 1 25378 604 Treponema genus 1 0 157 12 Treponema pallidum 349 1 species 0 160 Treponema denticola 1999 1 0 158 species 1 53435 0 species Treponema paraluiscuniculi 336 88058 0 species 1 1459 Treponema primitia 2816 Treponema brennaborense species 81028 0 1 2638727 0 no rank 1 3785 Treponema sp. OMZ 838 3785 1 0 1539298 species Treponema putidum 4198 1 221027 0 species 409322 0 species 1 1288 Treponema pedis 1 150829 0 species Treponema azotonutricium 1776 Treponema caldarium 1390 1 species 0 215591 Treponema succinifaciens 5378 1 167 0 species 11 2653 Spirochaeta 0 146 1 genus 3 species 0 154 1 1271 Spirochaeta thermophila 1 0 46355 species Spirochaeta africana 1371 9870 11 Borreliaceae 0 1643685 family 1 17 8 0 64895 genus 1 Borreliella 4716 100 species 0 62088 1 438 Borreliella valaisiana 1 64897 0 species Borreliella bissettii 511 0 139 species 1 1141 Borreliella burgdorferi 1 0 29518 species Borreliella afzelii 606 622 Borrelia mayonii 0 1674146 species 1 Borreliella garinii 854 1 0 29519 species Borreliella bavariensis 444 1 664662 0 species 8 1 genus 0 138 Borrelia 39 5143 1 0 142 species Borrelia turicatae 923 47466 0 species 1 1269 Borrelia miyamotoi Borrelia duttonii 593 1 species 0 40834 607 Borrelia recurrentis 44449 0 species 1 species 0 140 1 591 Borrelia hermsii Borrelia parkeri 589 1 0 141 species 532 Borrelia anserina 0 143 species 1 Brachyspirales 16173 2 7 1643686 0 order 1 16171 1397 Brachyspiraceae family 1 0 143786 6 5 genus 1 29521 0 Brachyspira 14774 1379 species 0 84378 1 2130 Brachyspira murdochii 3484 Brachyspira hyodysenteriae species 0 159 1 0 52584 species 1 4966 Brachyspira pilosicoli 1 species 0 84377 Brachyspira intermedia 2815 6102 0 1643688 order 9 Leptospiraceae 16 6102 9 0 170 1 family 2 889 Turneriella 0 338321 1 genus 2 1 29510 0 species Turneriella parva 887 171 0 genus 1 6 5197 16 Leptospira Leptospira santarosai 733 1 species 28183 0 804 Leptospira biflexa species 0 172 1 844 Leptospira borgpetersenii species 0 174 1 907 Leptospira alstonii 28452 0 species 1 Leptospira interrogans 1893 1 species 0 173 3 0 2323 no rank 1157 clade 1783234 0 3 1157 2 0 95901 clade 944 class 0 2497643 2 944 2 0 2497644 order 944 family 2497645 0 2 944 944 14 Candidatus Babela 0 1551504 genus 1 2 1 0 673862 species Candidatus Babela massiliensis 930 1 phylum 95818 0 213 213 no rank 0 1895827 1 2056494 0 species 1 213 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 9940 phylum 0 200783 27 27 1 class 0 187857 Aquificae 18 9940 1219 2 Desulfurobacteriales 0 1485951 order 1 6 1217 3 Desulfurobacteriaceae 0 558314 family 1 5 Desulfurobacterium 829 3 2 genus 1 0 64159 1 species 0 64160 Desulfurobacterium thermolithotrophum 826 Thermovibrio 385 4 2 genus 1 171868 0 381 Thermovibrio ammonificans 0 228745 species 1 1 order 32069 0 20 1 8703 Aquificales 2 4738 Aquificaceae 0 64898 1 family 11 genus 1 168657 0 6 3353 48 Hydrogenobaculum 3305 5 no rank 0 2622382 1 547145 0 species Hydrogenobaculum sp. SHO 683 0 380749 species 1 573 Hydrogenobaculum sp. Y04AAS1 683 Hydrogenobaculum sp. SN 0 547146 species 1 Hydrogenobaculum sp. 3684 683 1 0 547143 species 683 Hydrogenobaculum sp. HO 547144 0 species 1 625 0 75905 genus 2 411 Thermocrinis ruber 0 75906 species 1 1 species 136094 0 Thermocrinis albus 214 1 genus 0 2713 526 526 Aquifex aeolicus species 0 63363 1 genus 0 939 1 232 Hydrogenobacter thermophilus 232 1 940 0 species 2 no rank 90150 0 502 1 genus 0 412592 2 11 502 Thermosulfidibacter 491 Thermosulfidibacter takaii 0 412593 species 1 6 family 1 0 224027 Hydrogenothermaceae 3462 1 1 genus 182899 0 2 3 748 Persephonella 0 309805 species 1 745 Persephonella marina 3 genus 1 0 212790 Sulfurihydrogenibium 2713 6 Sulfurihydrogenibium azorense 1355 1 species 0 309806 1352 1 2619248 0 no rank Sulfurihydrogenibium sp. YO3AOP1 1352 1 0 436114 species 10 phylum 0 74152 2694 class 1 0 447830 6 1385 1 Endomicrobia 11 1384 Endomicrobiales 0 1783344 1 order 5 1 1373 Endomicrobiaceae 1 family 1783343 0 4 Endomicrobium 2 1372 3 1 genus 0 1408194 505 Candidatus Endomicrobium trichonymphae 0 1408204 species 1 Endomicrobium proavitum 865 1 species 0 1408281 470 0 99260 no rank 1 uncultured Termite group 1 bacterium 470 1 species 0 167965 3 class 0 641853 839 3 0 641854 1 order Elusimicrobiales 1 839 838 3 Elusimicrobiaceae 0 641876 family 1 2 1 genus 423604 0 835 0 423605 species 1 835 Elusimicrobium minutum 200938 0 phylum 5 2312 Chrysiogenetes 25 2312 5 1 class 0 118001 2287 34 Chrysiogenales 189769 0 order 1 4 13 2253 Chrysiogenaceae 1 family 0 189770 3 Desulfurispirillum 27 2240 2 0 393029 1 genus 2213 Desulfurispirillum indicum 0 936456 species 1 2339 3 68297 0 phylum 0 203486 class 3 2339 0 203487 order 3 2339 2339 3 family 0 203488 0 13 1 genus 3 3 2339 Dictyoglomus 1 0 14 species Dictyoglomus thermophilum 1284 1 513050 0 species Dictyoglomus turgidum 1052 1496 5 1930617 0 phylum 1496 8 Calditrichae 1962850 0 class 1 5 1 order 1962852 0 4 4 1488 Calditrichales 3 family 1 0 1962854 Calditrichaceae 1484 1 Caldithrix 3 1483 2 1 genus 0 187144 species 0 187145 1 1480 Caldithrix abyssi 5701 10 phylum 0 200930 Deferribacteres 15 5701 10 68337 0 1 class Deferribacterales 23 5686 9 191393 0 1 order 8 0 191394 family 1 Deferribacteraceae 5663 33 2 1 genus 0 2351 Flexistipes 1 860 0 2352 species 1 859 Flexistipes sinusarabici Denitrovibrio 1345 2 2 0 117999 genus 1 1343 Denitrovibrio acetiphilus 118000 0 species 1 1862 1 545865 0 genus Calditerrivibrio nitroreducens 1862 1 477976 0 species 2 0 53572 1 genus Deferribacter 1 1563 0 197162 species 1 1562 Deferribacter desulfuricans 2435 phylum 0 200940 9 2435 8 Thermodesulfobacteria class 1 67799 0 9 0 188710 order 8 2427 2427 3 Thermodesulfobacteriaceae family 1 0 188711 8 515 6 Thermodesulfatator 241192 0 genus 1 2 509 Thermodesulfatator indicus species 0 171695 1 2 1 genus 0 444090 Caldimicrobium 1 464 0 1653476 species 1 463 Caldimicrobium thiodismutans 18 1445 Thermodesulfobacterium 1 genus 1740 0 3 1 species 1295609 0 Thermodesulfobacterium geofontis 933 494 Thermodesulfobacterium commune 0 1741 species 1 4 clade 2498710 0 828 828 phylum 67814 0 4 Caldisericia 1 828 4 693071 0 1 class 0 693072 1 order 3 5 827 Caldisericales 2 693073 0 family 822 2 0 693074 genus 1 Caldisericum 822 9 813 Caldisericum exile species 693075 0 1