members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4Serratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 30 4449 19176 39529705 35 39485711 1 0 Bacteria 4178 2 superkingdom 0 542 phylum 200938 3 0 1 542 2 class 118001 Chrysiogenetes 3 189769 order 2 540 0 189770 family 2 Chrysiogenaceae 0 1 540 1 539 0 1 393029 genus Desulfurispirillum indicum 1 936456 species 0 539 200918 phylum 36 7411 0 0 7411 class 188708 36 1340 0 5 order 1643947 5 family 1643949 0 1340 1 0 1 223 2 Petrotoga genus 28236 1 Petrotoga mobilis 69499 species 0 222 1511648 genus 1 260 0 species 1006576 Defluviitoga tunisiensis 1 260 0 2 genus 160798 857 0 432 0 no rank 2640159 1 1545835 species 1 Marinitoga sp. 1137 432 0 0 425 149715 species Marinitoga piezophila 1 21 814 1 0 4 Kosmotogales order 1643946 793 0 1643948 family 3 0 358 genus 1184396 1 Mesotoga prima 1 1184387 species 358 0 435 0 2 651456 genus 651457 species 1 Kosmotoga olearia 0 139 1 Kosmotoga pacifica 1330330 species 296 0 1 0 2 5257 Thermotogales 27 order 2419 188709 family Thermotogaceae 17 0 1 3719 5 genus 1643951 Pseudothermotoga 5 2092 5 0 1 177758 species 1 Pseudothermotoga lettingae 0 772 119394 species 1 Pseudothermotoga thermarum 433 0 0 777 38322 species Pseudothermotoga elfii 1 105 0 species 57487 1 Pseudothermotoga hypogea 1 0 47 1622 Thermotoga 11 genus 2335 171 0 93930 species 1 Thermotoga naphthophila 178 0 species 93929 1 Thermotoga petrophila Thermotoga caldifontis 1 1508419 species 0 206 2631113 no rank 4 597 0 0 168 Thermotoga sp. RQ7 1 species 126738 1 Thermotoga sp. Cell2 1157947 species 169 0 species 126740 Thermotoga sp. RQ2 1 0 138 0 122 1157948 species 1 Thermotoga sp. 2812B 0 141 species 2336 1 Thermotoga maritima 152 0 2337 species Thermotoga neapolitana 1 0 130 1508420 species Thermotoga profunda 1 3 1536 1 0 9 Fervidobacteriaceae family 1643950 663 4 0 1 2420 genus 5 Thermosipho 0 276 2 no rank 2676525 1 Thermosipho sp. 1063 1462747 species 0 142 0 134 species 1437364 Thermosipho sp. 1070 1 Thermosipho melanesiensis 1 46541 species 0 170 213 0 Thermosipho africanus 1 species 2421 870 0 genus 2422 3 183 0 Fervidobacterium nodosum 1 2424 species species 93466 1 Fervidobacterium pennivorans 533 0 species 2423 1 Fervidobacterium islandicum 154 0 120 0 2498710 clade 1 120 0 1 phylum 67814 120 0 class 693071 1 0 120 693072 order 1 120 0 693073 family 1 1 693074 genus 0 120 120 0 1 Caldisericum exile species 693075 5 74152 phylum 1146 0 447830 class 2 707 0 0 707 1783344 order 2 1783343 family 2 0 707 707 0 2 genus 1408194 1 Candidatus Endomicrobium trichonymphae species 1408204 230 0 0 477 Endomicrobium proavitum 1 1408281 species 99260 no rank 1 0 238 species 167965 1 uncultured Termite group 1 bacterium 0 238 201 2 0 1 641853 class Elusimicrobia 2 1 order 641854 199 0 family 641876 1 199 0 199 0 1 423604 genus 199 0 1 Elusimicrobium minutum species 423605 1783270 clade 347 26204575 0 1 456828 phylum 0 212 1 456826 genus 0 212 0 212 456827 species 1 Candidatus Cloacimonas acidaminovorans clade 68336 335 0 26202058 7295 0 1090 phylum 22 19 7295 1 0 22 Chlorobia 191410 class 21 Chlorobiales order 191411 61 7276 1 0 20 Chlorobiaceae 191412 family 19 7215 1 0 Chloroherpeton 2 100715 genus 1 0 2 353 0 351 1 Chloroherpeton thalassium species 100716 256319 genus Chlorobaculum 4 0 1 1554 8 0 376 Chlorobaculum parvum 1 274539 species species 1097 Chlorobaculum tepidum 1 0 437 274537 species Chlorobaculum limnaeum 1 733 0 5 Prosthecochloris 1101 genus 9 1881 1 0 3 2632826 no rank 1185 0 Prosthecochloris sp. HL-130-GSB 1 species 1974213 370 0 0 453 species 281093 1 Prosthecochloris sp. GSB1 0 362 species 1868325 Prosthecochloris sp. CIB 2401 1 687 0 1 Prosthecochloris aestuarii species 1102 0 3408 no rank 274493 8 3 Pelodictyon genus 1099 8 1021 1 0 0 516 Pelodictyon luteolum 1 1100 species species 34090 1 Pelodictyon phaeoclathratiforme 497 0 1 0 1 2387 5 Chlorobium genus 1091 0 1104 Chlorobium phaeobacteroides 1 1096 species species 1094 Chlorobium phaeovibrioides 1 0 345 0 664 Chlorobium limicola 1 species 1092 1 Chlorobium chlorochromatii species 337090 0 273 4 1134404 phylum 0 1433 1433 0 class 795747 4 795748 order 4 Ignavibacteriales 1433 1 0 1 0 548 family 795749 2 548 2 0 1 795750 genus 2 Ignavibacterium 1 Ignavibacterium album 591197 species 0 546 1334117 family 1 884 0 genus 1134403 1 884 0 1 Melioribacter roseus 1134405 species 884 0 Bacteroidetes 309 976 phylum 42 26193330 1 0 16029 3 0 1 1853228 class 16 Chitinophagia 16026 25 0 1 1853229 order 15 Chitinophagales 1 0 63 16001 14 Chitinophagaceae family 563835 2 2921 1 0 Filimonas 2 649460 genus Filimonas lacunae 1 477680 species 2919 0 2343 28 0 1 354354 genus 2 Niastella 2315 0 Niastella koreensis 1 354356 species 1 3987 1 0 3 Niabella 379899 genus 1 Niabella soli 446683 species 2031 0 species 1176587 1 Niabella ginsenosidivorans 1955 0 genus 398041 Flavisolibacter 2 0 1 1098 10 1492898 species 1 Flavisolibacter tropicus 0 1088 0 1362 genus 1769012 1 0 1362 1 no rank 2636138 1850526 species 1 Arachidicoccus sp. BS20 1362 0 3 Chitinophaga genus 79328 1 4227 1 0 79329 species 1 Chitinophaga pinensis 2698 0 0 1528 species 2029983 Chitinophagaceae bacterium 13 1 0 1 176288 44 class 117743 138 Flavobacteriia 0 1 176244 86 200644 order 137 Flavobacteriales 1853230 family 3 Crocinitomicaceae 1861 1 0 1 1 0 77 1860 Fluviicola 2 332102 genus 0 1783 191579 species Fluviicola taffensis 1 610 0 9 39782 family 5 610 1 0 Blattabacterium 9 34098 genus 0 72 1653831 species Blattabacterium cuenoti 1 458 0 6 no rank 2647581 102 0 Blattabacterium sp. (Blattella germanica) 1 624186 species Blattabacterium sp. (Mastotermes darwiniensis) 1 39768 species 57 0 89 0 1 Blattabacterium sp. (Blaberus giganteus) species 1186051 species 367806 Blattabacterium sp. (Blatta orientalis) 1 77 0 0 48 1 Blattabacterium sp. (Nauphoeta cinerea) species 1316444 Blattabacterium sp. (Periplaneta americana) 1 367488 species 0 85 75 0 1 Blattabacterium punctulatus species 164514 0 78458 2762318 family 20 genus 308865 Elizabethkingia 6 8988 53 0 1 0 1050 1756149 species Elizabethkingia genomosp. 3 1 0 3302 Elizabethkingia anophelis 1 1117645 species 795 0 species 1756150 1 Elizabethkingia genomosp. 4 238 species Elizabethkingia meningoseptica 1 1632 0 172045 species Elizabethkingia miricola 1 0 2156 12839 0 2782232 no rank 10 72 11547 1 0 Chryseobacterium 9 genus 59732 2764 0 1 Chryseobacterium indologenes 253 species 1324352 species 1 Chryseobacterium gallinarum 1299 0 Chryseobacterium piperi 1 species 558152 970 0 1 Chryseobacterium glaciei species 1685010 0 1072 3893 0 3 2593645 no rank 0 1301 1 Chryseobacterium sp. T16E-39 species 2015076 0 1090 1 Chryseobacterium sp. StRB126 species 878220 0 1502 Chryseobacterium sp. IHB B 17019 1 1721091 species 0 1477 Chryseobacterium camelliae 1 species 1265445 0 1292 1 2782228 genus 0 1292 1 Chryseobacterium taklimakanense species 536441 genus 34084 1 0 3208 0 3208 1 Riemerella anatipestifer 34085 species genus 1013 1 0 480 Weeksella virosa 1 1014 species 0 480 1 0 270 52943 2 Ornithobacterium genus 28250 0 52673 28251 species 1 Ornithobacterium rhinotracheale 54 0 1 1755828 family 54 0 1 1755829 genus 0 54 species 242600 Ichthyobacterium seriolicida 1 0 1 family 246874 Cryomorphaceae 1 2 313602 no rank 0 1368 0 93 1 genus 336809 species 336810 1 Candidatus Sulcia muelleri 0 93 1 1940138 genus 0 1275 1 Candidatus Walczuchella monophlebidarum species 1415657 1275 0 92378 4014 0 1 49546 family 99 Flavobacteriaceae 3 genus 104264 2615 0 species 59600 Cellulophaga algicola 1 0 603 979 species Cellulophaga lytica 1 834 0 species 76594 Cellulophaga baltica 1 1178 0 438 0 1 genus 83612 438 0 1 Psychroflexus torquis 57029 species 2 no rank 61432 0 1387 1 Flavobacteriaceae bacterium 3519-10 species 531844 638 0 749 0 1 Flavobacteriaceae bacterium UJ101 1150389 species 2 Salegentibacter 143222 genus 1 823 1 0 822 0 1 2633436 no rank 822 0 1729720 species Salegentibacter sp. T436 1 1 1209327 genus 0 1207 species 1803846 Flavivirga eckloniae 1 0 1207 885 0 178469 genus 1 885 0 1 Arenibacter algicola species 616991 1 0 14 3858 Polaribacter 6 52959 genus species 1774273 1 Polaribacter vadi 0 1082 896 0 1 Polaribacter reichenbachii 996801 species 0 1866 196858 no rank 3 0 573 1529069 species Polaribacter sp. BM10 1 Polaribacter sp. MED152 1 species 313598 0 624 2058137 species Polaribacter sp. ALD11 1 669 0 655 0 1 153265 genus 655 0 1 Aequorivita sublithincola 101385 species 1010 28 0 1 genus 112040 2 Zobellia Zobellia galactanivorans 1 63186 species 982 0 Capnocytophaga 15 1016 genus 1 0 50 31226 species 45243 Capnocytophaga haemolytica 1 0 1075 1158 0 1017 species Capnocytophaga gingivalis 1 1 Capnocytophaga canimorsus 28188 species 1298 0 7098 0 Capnocytophaga leadbetteri 1 327575 species 0 13624 2640652 no rank 6 Capnocytophaga sp. oral taxon 878 1 species 1316596 6870 0 1897 0 species 209053 1 Capnocytophaga sp. ChDC OS43 739 0 1945658 species 1 Capnocytophaga sp. H4358 1674 0 1 Capnocytophaga sp. oral taxon 323 1705617 species 0 635 1945657 species 1 Capnocytophaga sp. H2931 species 1316593 Capnocytophaga sp. oral taxon 864 1 1809 0 species 1019 Capnocytophaga sputigena 1 2809 0 0 1008 1 Capnocytophaga cynodegmi species 28189 0 1439 1 Capnocytophaga ochracea 1018 species Capnocytophaga stomatis 1 1848904 species 1667 0 792 0 393005 genus 1 Tamlana sp. UJ94 1 2069432 species 792 0 0 1 732 2 genus 1204360 2 Siansivirga 1 Siansivirga zeaxanthinifaciens 762954 species 0 730 1478 0 genus 111500 2 0 894 111501 species Muricauda ruestringensis 1 516051 species 1 Muricauda lutaonensis 0 584 genus 389486 1 0 466 466 0 1 no rank 2648869 0 466 1 Sediminicola sp. YIK13 1453352 species 1 750 1 0 Algibacter 2 261827 genus 749 0 species 1736674 1 Algibacter alginicilyticus 225842 genus 2 1012 0 0 1012 2644710 no rank 2 Formosa sp. Hel3_A1_48 1 1336795 species 472 0 Formosa sp. Hel1_33_131 1 species 1336794 0 540 632 0 1 1649495 genus 0 632 1 no rank 2622645 species 1936081 Seonamhaeicola sp. S2-3 1 0 632 788 0 2 genus 286104 2 2615021 no rank 788 0 0 322 1936080 species Winogradskyella sp. J14-2 1 Winogradskyella sp. PG-2 1 species 754409 0 466 0 958 genus 336276 1 2615019 no rank 1 0 958 species 2058135 Olleya sp. Bg11-27 1 0 958 1518147 genus 1 607 0 1790137 species 1 Wenyingzhuangia fucanilytica 0 607 0 375 1176327 genus 1 1 no rank 2636237 0 375 0 375 2094025 species Aureitalea sp. RR4-38 1 1296 2 0 1 417127 genus Zunongwangia 2 398743 species 1 Zunongwangia profunda 0 1294 252306 genus 2 Robiginitalea 912 9 0 1 0 903 252307 species Robiginitalea biformata 1 genus 358023 Lutibacter 2 0 1 427 23 0 404 species 1622118 1 Lutibacter profundi 104267 genus Tenacibaculum 5 2081 11 0 1 0 589 species 584609 Tenacibaculum jejuense 1 458 0 1 Tenacibaculum dicentrarchi species 669041 species 1850252 Tenacibaculum todarodis 1 460 0 1 Tenacibaculum maritimum species 107401 0 563 363408 genus 4 0 1482 328515 species 1 Nonlabens dokdonensis 0 488 no rank 2615035 2 732 0 339 0 species 1476901 Nonlabens sp. MIC269 1 0 393 species 2058134 Nonlabens sp. MB-3u-79 1 species 319236 Nonlabens sediminis 1 262 0 1 2700084 genus 750 0 Lutibacter sp. LPB0138 1 1850246 species 0 750 1 0 1 3765 5 Gramella 292691 genus 454 0 species 1913577 1 Gramella sp. LPB0144 Gramella forsetii 1 species 411153 0 726 0 1294 1 Gramella flava 1486245 species 1290 0 Gramella sp. SH35 1 2126553 species genus 216431 2 Croceibacter 669 1 0 1 668 0 Croceibacter atlanticus 1 species 313588 252356 genus 4 0 3129 899 0 species 1178778 Maribacter cobaltidurans 1 0 2230 3 2615042 no rank Maribacter sp. 1_2014MBL_MicDiv 1 species 1644130 0 916 0 528 1 Maribacter sp. HTCC2170 species 313603 0 786 species 1836467 1 Maribacter sp. T28 6699 38 0 1 genus 76831 Myroides 5 76832 species Myroides odoratimimus 1 0 3760 2 2642485 no rank 1981 0 Myroides sp. ZB35 1 species 1458492 0 885 Myroides sp. A21 1 1583100 species 1096 0 species 480520 1 Myroides profundi 920 0 1277 1 0 1 291183 genus 4 Lacinutrix 0 771 2 no rank 2647285 1 Lacinutrix sp. 5H-3-7-4 983544 species 325 0 446 0 1 Lacinutrix sp. Bg11-31 2057808 species Lacinutrix venerupis 1 species 1486034 505 0 1792 0 3 genus 326319 670 0 2 no rank 2615033 species 313590 Dokdonia sp. MED134 1 140 0 530 0 983548 species Dokdonia sp. 4H-3-7-5 1 0 1122 1 Dokdonia donghaensis species 326320 1 0 1 11391 Flavobacterium 9 237 genus 0 395 312277 species 1 Flavobacterium indicum 1492737 species 1 Flavobacterium gilvum 0 1532 species 996 Flavobacterium columnare 1 0 1652 3042 0 1 Flavobacterium johnsoniae species 986 0 1326 Flavobacterium psychrophilum 1 species 96345 1 Flavobacterium crassostreae species 1763534 1126 0 1 Flavobacterium commune 1306519 species 0 1666 0 651 1 Flavobacterium branchiophilum species 55197 0 1428 1 1333713 family genus 267986 1 1428 0 0 1428 1 Owenweeksia hongkongensis species 253245 36 48371 1 0 52 Cytophagia 768503 class 0 1 48335 118 768507 order 51 Cytophagales 2 family 1853234 2063 0 genus 59740 2 Persicobacter 0 1 2063 16 2047 0 1 no rank 2664020 1 Persicobacter sp. JZB09 1085624 species 0 2047 1 4189 1 0 4 Flammeovirgaceae family 200667 1 0 22 1831 Flammeovirga 2 genus 59739 1809 0 no rank 2637820 1 1809 0 1191459 species Flammeovirga sp. MY04 1 0 2357 1 340671 no rank 0 2357 Flammeovirgaceae bacterium 311 1 species 1257021 2 family 1501348 436 0 273135 genus 1 251 0 0 251 no rank 2641185 1 251 0 Cardinium endosymbiont of Encarsia pergandiella 1 249402 species 0 185 281119 genus 1 0 185 Candidatus Amoebophilus asiaticus 1 281120 species 29 15303 1 0 15 Cytophagaceae family 89373 0 1 1742 2 genus 120831 2 Dyadobacter 1740 0 1 Dyadobacter fermentans species 94254 1015 0 861914 genus 1 2620963 no rank 1 0 1015 1015 0 Fibrella sp. ES10-3-2-2 1 species 1834519 0 1127 978 genus 1 Cytophaga hutchinsonii 1 species 985 1127 0 0 1 2267 1 genus 105 2 Runella 1 Runella slithyformis 106 species 2266 0 2 1461 1 0 Leadbetterella 2 genus 319458 1459 0 species 316068 1 Leadbetterella byssophila 0 1 7662 26 107 genus Spirosoma 6 0 1708 Spirosoma aerolatum 1 1211326 species 1369 0 1379870 species Spirosoma radiotolerans 1 2057025 species Spirosoma sp. HA7 1 0 1655 Spirosoma montaniterrae 1 1178516 species 0 1306 species 564064 1 Spirosoma rigui 1598 0 family 2762301 2 602 0 869806 genus Marivirga 2 602 14 0 1 0 588 species 1006 1 Marivirga tractuosa family 1937968 2 0 807 807 2 0 1 1937972 genus 2 Bernardetia Bernardetia litoralis 1 999 species 0 805 20014 48 0 1 1853232 family Hymenobacteraceae 16 genus 89966 Hymenobacter 8 0 1 12490 97 8826 0 5 no rank 2615202 1356852 species 1 Hymenobacter sp. APR13 1823 0 species 1385663 1 Hymenobacter sp. DG25A 0 1601 0 1803 1484116 species 1 Hymenobacter sp. PAMC 26554 0 1592 species 1484118 1 Hymenobacter sp. PAMC 26628 species 1385664 Hymenobacter sp. DG25B 1 2007 0 0 1729 1411621 species 1 Hymenobacter sedentarius Hymenobacter swuensis 1 species 1446467 0 1838 genus 1379908 Rufibacter 4 4154 13 0 1 no rank 2639626 2 0 2572 1249 0 1379909 species Rufibacter sp. DG15C 1 1323 0 Rufibacter sp. DG31D 1 species 1379910 1569 0 1 Rufibacter tibetensis 512763 species 3 Pontibacter genus 323449 1 0 4 3322 species 400092 Pontibacter korlensis 1 0 1430 1888 0 Pontibacter akesuensis 1 species 388950 1 0 5 4803 Cyclobacteriaceae 7 563798 family 4 1807 1 0 3 Cyclobacterium 68288 genus Cyclobacterium amurskyense 1 320787 species 909 0 0 894 Cyclobacterium marinum 1 104 species 1 genus 232244 783 0 species 232259 1 Belliella baltica 783 0 459 0 genus 246875 1 Algoriphagus sp. M8-2 1 species 1727163 459 0 0 1749 390846 genus 1 species 390884 Echinicola vietnamensis 1 0 1749 1 0 2 1957 Saprospiria 4 1937959 class 0 1 1955 3 1936988 order 3 Saprospirales 0 281 89374 family 1 genus 1007 1 0 281 0 281 Saprospira grandis 1 1008 species 1 1937961 family 0 1671 1 2349 genus 1671 0 2350 species Haliscomenobacter hydrossis 1 1671 0 1 0 63 25917655 Bacteroidia 68 200643 class 4144 25909837 1 0 58 Bacteroidales order 171549 1 0 2 20504 6 Dysgonamonadaceae 2005520 family 6 7528 1 0 Petrimonas 2 307628 genus 1642646 species 1 Petrimonas mucosa 7522 0 294702 genus 2 Proteiniphilum 0 1 7973 9 Proteiniphilum saccharofermentans 1 species 1642647 0 7964 1 genus 1784836 5001 0 Fermentimonas caenicola 1 1562970 species 0 5001 2 family 2005523 0 5272 2 Paludibacter 346096 genus 5 5272 1 0 5267 0 185300 species Paludibacter propionicigenes 1 2005519 family 3 Barnesiellaceae 0 1 328225 3 397864 genus 2 Barnesiella 0 1 328222 182 Barnesiella viscericola 1 397865 species 0 328040 no rank 333046 4 0 5854185 0 5853020 3 genus 909656 1 Bacteroides salanitronis species 376805 180760 0 357276 species 1 Bacteroides dorei 0 4788892 Bacteroides vulgatus 1 species 821 883368 0 0 1165 1 511434 genus 1165 0 species 511435 Candidatus Azobacteroides pseudotrichonymphae 1 16133423 62 0 1 815 family Bacteroidaceae 11 10 Bacteroides 816 genus 1 0 174037 16133361 Bacteroides heparinolyticus 1 species 28113 270359 0 0 1276835 1 Bacteroides caecimuris 1796613 species 817 species 1 Bacteroides fragilis 1055291 0 221893 0 species 28119 1 Bacteroides zoogleoformans 0 317323 Bacteroides caccae 1 47678 species 9695102 0 1 Bacteroides ovatus 28116 species species 246787 1 Bacteroides cellulosilyticus 0 563881 1 Bacteroides helcogenes species 290053 0 337253 species 818 1 Bacteroides thetaiotaomicron 0 2221387 Rikenellaceae 5 family 171550 18 218682 1 0 1 0 109 216055 2 Alistipes genus 239759 214856 species 1 Alistipes finegoldii 0 215946 0 1 2609 2 1611681 genus 2 Mucinivorans 2607 0 1433126 species 1 Mucinivorans hirudinis 4 Porphyromonadaceae 171551 family 1 0 8 15751 1 0 6 15743 Porphyromonas 3 836 genus 12837 0 Porphyromonas gingivalis 1 837 species 2900 0 species 28123 1 Porphyromonas asaccharolytica 0 1458 1 no rank 185291 0 1458 1 Bacteroidales bacterium CF 1400053 species 171552 family 11 Prevotellaceae 0 1 411758 11 1 0 448 411747 10 Prevotella genus 838 4356 0 no rank 2638335 1 4356 0 Prevotella sp. oral taxon 299 1 species 652716 species 28131 Prevotella intermedia 1 355856 0 0 8479 1 Prevotella denticola species 28129 10514 0 839 species 1 Prevotella ruminicola Prevotella jejuni 1 species 1177574 5638 0 1 Prevotella melaninogenica species 28132 5892 0 Prevotella fusca 1 species 589436 5778 0 species 52227 Prevotella dentalis 1 8298 0 0 6488 Prevotella enoeca 1 76123 species 0 1 2791236 296 family 2005525 Tannerellaceae 7 375288 genus Parabacteroides 3 0 1 2738719 228 0 1155447 species 823 1 Parabacteroides distasonis no rank 2649774 1 1583044 0 0 1583044 Parabacteroides sp. CT06 1 2025876 species 3 Tannerella genus 195950 1 0 291 52221 no rank 2620507 1 8818 0 0 8818 species 712710 Tannerella sp. oral taxon HOT-286 1 28112 species Tannerella forsythia 1 43112 0 125199 4 0 1 1853231 family Odoribacteraceae 3 1 0 10 125195 2 Odoribacter 283168 genus 125185 0 Odoribacter splanchnicus 1 28118 species 7755 0 9 order 1970189 Marinifilaceae 2 1573805 family 1 1751 1 0 1 2060722 genus 1750 0 1750 0 Marinifilaceae bacterium SPP2 1 1717717 species 1 934 1 0 3 Salinivirgaceae 1970190 family 1 0 4 933 Salinivirga 2 1970191 genus Salinivirga cyanobacteriivorans 1 1307839 species 929 0 1485 0 558415 family 1 1 1193324 genus 1485 0 1485 0 889453 species Alkalitalea saponilacus 1 1471398 family 3 Prolixibacteraceae 3585 4 0 1 2 Draconibacterium 1471399 genus 1 3581 1 0 3580 0 species 1168034 Draconibacterium orientale 1 1 0 34 2538 Bacteroidetes Order II. Incertae sedis 6 1100069 order 0 1 2504 19 563843 family 5 Rhodothermaceae 0 991 1 1196022 no rank 1779382 species 1 Rhodothermaceae bacterium RA 0 991 146918 genus 1 422 0 146919 species Salinibacter ruber 1 422 0 1 0 1 1072 2 Rhodothermus 29548 genus 0 1071 1 Rhodothermus marinus species 29549 30450 123 0 1 class 117747 24 Sphingobacteriia 200666 order 23 Sphingobacteriales 0 1 30327 10 Sphingobacteriaceae 22 84566 family 46 30317 1 0 423349 genus 4 Mucilaginibacter 0 1 4178 7 1550579 species Mucilaginibacter gotjawali 1 0 1241 1 no rank 2617802 0 1683 1 Mucilaginibacter sp. PAMC 26640 species 1300914 0 1683 species 1234841 Mucilaginibacter sp. BJC16-A31 1 0 1247 34 10231 1 0 6 Pedobacter genus 84567 0 1733 363852 species 1 Pedobacter ginsengisoli species 430522 Pedobacter steynii 1 0 1932 2130 0 species 188932 1 Pedobacter cryoconitis 0 2531 984 species 1 Pedobacter heparinus 1 2628915 no rank 1871 0 1727164 species 1 Pedobacter sp. PACM 27299 0 1871 6 Sphingobacterium genus 28453 1 0 6 10235 8825 0 2609468 no rank 4 1937 0 species 1933220 Sphingobacterium sp. B29 1 2062 0 species 743722 Sphingobacterium sp. 21 1 1 Sphingobacterium sp. ML3W 1538644 species 0 2786 0 2040 1 Sphingobacterium sp. G1-14 2003121 species 1 Sphingobacterium mizutaii species 1010 0 1404 0 1843 1 no rank 84568 1986952 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 0 1843 6 1916 1 0 Solitalea 2 genus 929509 0 1910 Solitalea canadensis 1 species 995 0 1 1868 2 genus 1649482 2 Pseudopedobacter 151895 species Pseudopedobacter saltans 1 1866 0 3 65842 phylum 0 995 995 0 3 204430 class order 218872 3 Fibrobacterales 995 1 0 1 family 204431 2 Fibrobacteraceae 0 1 994 5 989 0 1 genus 832 Fibrobacter succinogenes 1 species 833 989 0 8 phylum 142182 0 1310 8 Gemmatimonadetes 219685 class 2 1310 1 0 order 219686 7 Gemmatimonadales 1308 11 0 1 219687 family 6 Gemmatimonadaceae 1297 6 0 1 0 1 427 9 1706036 genus 2 Gemmatirosa 861299 species Gemmatirosa kalamazoonesis 1 418 0 3 Gemmatimonas genus 173479 1 0 32 864 173480 species 1 Gemmatimonas aurantiaca 455 0 1379270 species 1 Gemmatimonas phototrophica 377 0 1783257 clade 76 0 27530 21 74201 phylum 0 6550 Verrucomicrobiae 6 203494 class 2 3440 1 0 30 3438 1 0 5 Verrucomicrobiales 48461 order 1 0 27 3408 4 Akkermansiaceae 1647988 family 3381 68 0 1 genus 239934 3 Akkermansia 0 991 Akkermansia glycaniphila 1 1679444 species 2322 0 species 239935 Akkermansia muciniphila 1 1885 7 0 1 414999 class Opitutae 9 order 415001 2 Puniceicoccales 305 1 0 1 415002 family 1 0 304 442430 genus 1 304 0 304 0 1 Coraliomargarita akajimensis species 395922 9 1573 1 0 6 Opitutales 415000 order 1564 15 0 1 family 134623 5 Opitutaceae 1 278955 no rank 593 0 1 Opitutaceae bacterium TAV5 species 794903 593 0 1 178440 genus 378 0 378 0 species 107709 Opitutus terrae 1 0 1 578 5 1961799 genus Lacunisphaera 2 1838286 species 1 Lacunisphaera limnophila 0 573 0 1010 417295 no rank 2 1 Verrucomicrobia bacterium species 2026799 0 597 0 413 1637999 species Verrucomicrobia bacterium IMCC26134 1 51 3 0 1 134549 class 2 Spartobacteria 1 134550 genus 0 48 2648876 no rank 1 0 48 1704307 species Candidatus Xiphinematobacter sp. Idaho Grape 1 48 0 class 1955630 2 0 164 164 0 2 717963 order 164 0 2 717964 family 164 0 2 genus 511745 Methylacidiphilum infernorum 1 species 511746 0 95 591154 species Methylacidiphilum fumariolicum 1 0 69 phylum 204428 21 0 3632 0 1 3632 688 204429 class 21 Chlamydiia 551 2295 1 0 14 Chlamydiales 51291 order 43 1744 1 0 13 Chlamydiaceae 809 family 1113537 no rank 12 0 1701 92 1701 1 0 12 Chlamydia 810 genus 83559 species 1 Chlamydia suis 0 31 Chlamydia pneumoniae 1 83558 species 0 33 1 Chlamydia trachomatis species 813 0 1050 83556 species 1 Chlamydia felis 63 0 83555 species Chlamydia abortus 1 0 23 38 0 1457153 species 1 Chlamydia gallinacea species 83554 1 Chlamydia psittaci 0 159 83560 species Chlamydia muridarum 1 0 50 26 0 1457141 species 1 Chlamydia avium 1 Chlamydia pecorum 85991 species 72 0 83557 species Chlamydia caviae 1 64 0 6 Parachlamydiales order 1963360 1 0 1 649 2 family 92713 0 438 genus 282132 1 222 0 species 389348 1 Candidatus Protochlamydia naegleriophila 0 222 216 0 83551 genus 1 0 216 species 83552 Parachlamydia acanthamoebae 1 0 1 74 2 92714 family 2 Waddliaceae 72 0 1 71666 genus Waddlia chondrophila 1 71667 species 0 72 136 0 1 92712 family 136 0 34093 genus 1 0 136 Simkania negevensis 1 83561 species phylum 256845 3 11069 0 21 11069 1 0 3 Lentisphaeria 1313211 class Victivallales 2 278082 order 18 11048 1 0 no rank 1674876 1 0 11030 0 11030 Victivallales bacterium CCUG 44730 1 2094242 species 3 phylum 134625 386 0 1 386 1 0 Kiritimatiellae 3 class 1921781 1921782 order 2 0 385 0 385 family 1921783 2 1 0 9 385 Kiritimatiella 2 1921784 genus 376 0 Kiritimatiella glycovorans 1 1307763 species 0 5893 28 phylum 203682 1 0 1 1242 6 Phycisphaerae 666505 class 2483366 order 2 0 856 2 2483367 family 0 856 2483368 genus 2 856 0 1 Phycisphaerae bacterium L21-RPul-D3 species 1940790 0 373 0 483 Phycisphaerae bacterium ST-PulAB-D4 1 1941349 species order 666506 3 Phycisphaerales 0 1 385 6 family 666507 Phycisphaeraceae 2 379 7 0 1 0 372 1 666508 genus 0 372 1 Phycisphaera mikurensis 547188 species 1 0 30 4431 20 Planctomycetia 203683 class 687 0 4 order 2691354 0 239 1 family 2691358 0 239 1 genus 1676125 239 0 Thermogutta terrifontis 1 1331910 species 448 0 3 family 2691357 265488 genus 2 Rhodopirellula 0 1 236 1 235 0 species 265606 Rhodopirellula baltica 1 212 0 1 123 genus 0 212 125 species Pirellula staleyi 1 1 2691355 order 0 377 family 1914233 1 377 0 1 113 genus 0 377 2622970 no rank 1 0 377 Gemmata sp. SH-PL17 1 species 1630693 377 0 8 Planctomycetales 112 order 90 2206 1 0 14 2116 1 0 Planctomycetaceae 7 126 family 0 283 genus 1649480 1 283 0 1 Planctopirus limnophila species 120 800 14 0 1 118 genus Planctomyces 3 2 no rank 2648843 786 0 359 0 1632864 species 1 Planctomyces sp. SH-PL14 1636152 species Planctomyces sp. SH-PL62 1 0 427 504 0 1 genus 1936111 504 0 1 Fuerstia marisgermanicae 1891926 species 1 genus 1649490 515 0 515 0 1 Rubinisphaera brasiliensis 119 species 1131 0 6 order 2691356 1131 9 0 1 family 1763524 6 Isosphaeraceae genus 1763521 Paludisphaera 2 420 31 0 1 1 Paludisphaera borealis 1387353 species 0 389 1 genus 466152 377 0 Singulisphaera acidiphila 1 466153 species 0 377 2 Isosphaera genus 127 1 0 1 325 species 128 Isosphaera pallida 1 324 0 0 220 2 class 2517206 2 1127829 order 220 0 Candidatus Brocadiaceae 2 1127830 family 5 220 1 0 1 genus 380738 0 215 Candidatus Kuenenia stuttgartiensis 1 174633 species 0 215 229 0 2 2323 no rank 0 229 2 1783234 clade 0 77 95818 phylum 1 77 0 no rank 1895827 1 species 2056494 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 77 152 0 95901 clade 1 152 0 1 2497643 class 0 152 2497644 order 1 2497645 family 1 0 152 152 0 1 1551504 genus species 673862 Candidatus Babela massiliensis 1 0 152 3 1930617 phylum 776 0 1962850 class 3 Calditrichae 0 1 776 4 1962852 order 2 0 772 1962854 family Calditrichaceae 2 0 1 772 2 770 0 1 genus 187144 770 0 1 Caldithrix abyssi species 187145 6 phylum 200940 591 0 6 67799 class 591 0 591 0 6 order 188710 188711 family 6 Thermodesulfobacteriaceae 591 6 0 1 0 217 1 241192 genus 1 Thermodesulfatator indicus 171695 species 0 217 0 1 302 2 1740 genus 3 Thermodesulfobacterium Thermodesulfobacterium commune 1 species 1741 59 0 Thermodesulfobacterium geofontis 1 species 1295609 241 0 66 0 1 444090 genus 66 0 Caldimicrobium thiodismutans 1 species 1653476 55 203691 phylum 0 29956 0 1 29956 82 203692 class Spirochaetia 55 1 0 52 22870 Spirochaetales 39 136 order 1188 0 1643685 family 15 1 0 8 542 8 Borreliella 64895 genus 0 48 1674146 species 1 Borrelia mayonii Borreliella bissettii 1 64897 species 42 0 178 0 29519 species Borreliella garinii 1 139 species Borreliella burgdorferi 1 0 117 Borreliella bavariensis 1 species 664662 0 43 1 Borreliella valaisiana species 62088 0 36 70 0 29518 species Borreliella afzelii 1 138 genus 7 0 646 1 Borrelia hermsii species 140 62 0 1 Borrelia miyamotoi 47466 species 0 176 141 species Borrelia parkeri 1 0 89 0 78 species 40834 1 Borrelia duttonii species 143 Borrelia anserina 1 87 0 142 species Borrelia turicatae 1 85 0 69 0 Borrelia recurrentis 1 species 44449 301 21630 1 0 Spirochaetaceae 23 137 family 572 2 0 1 genus 1911556 2 Sediminispirochaeta 1 Sediminispirochaeta smaragdinae 55206 species 0 570 5 1935 1 0 Sphaerochaeta 4 genus 399320 1 Sphaerochaeta globosa 1131703 species 786 0 1 Sphaerochaeta pleomorpha 1131707 species 725 0 273376 species Sphaerochaeta coccoides 1 419 0 genus 157 Treponema 12 16951 210 0 1 Treponema pallidum 1 species 160 94 0 0 575 1 no rank 2638727 1 Treponema sp. OMZ 838 1539298 species 0 575 337 0 158 species Treponema denticola 1 Treponema paraluiscuniculi 1 53435 species 0 94 Treponema putidum 1 species 221027 622 0 Treponema brennaborense 1 species 81028 0 968 439 0 Treponema pedis 1 409322 species species 88058 1 Treponema primitia 0 650 11554 0 1 Treponema succinifaciens species 167 215591 species Treponema caldarium 1 480 0 928 0 Treponema azotonutricium 1 150829 species 1616789 genus 1 0 928 species 1307761 1 Salinispira pacifica 928 0 Spirochaeta 3 genus 146 1 943 1 0 Spirochaeta africana 1 species 46355 0 607 335 0 species 154 Spirochaeta thermophila 1 1966 0 1643688 order 8 family 170 Leptospiraceae 8 0 1 1966 1 genus 338321 1 231 0 1 Turneriella parva species 29510 231 0 1734 3 0 1 171 genus 6 Leptospira species 173 1 Leptospira interrogans 564 0 208 0 species 28183 1 Leptospira santarosai 471 0 1 Leptospira borgpetersenii species 174 1 Leptospira alstonii 28452 species 192 0 1 Leptospira biflexa 172 species 0 296 order 1643686 Brachyspirales 7 5038 3 0 1 1 0 1080 5035 6 Brachyspiraceae 143786 family Brachyspira 5 29521 genus 1 0 929 3955 0 974 159 species Brachyspira hyodysenteriae 1 Brachyspira murdochii 1 84378 species 364 0 species 52584 1 Brachyspira pilosicoli 975 0 species 84377 Brachyspira intermedia 1 713 0 0 84 1 2138240 phylum 1 class 2138243 84 0 2138246 order 1 0 84 family 2138247 1 0 84 0 84 68335 genus 1 1 Coprothermobacter proteolyticus 35786 species 0 84 21157 0 phylum 32066 22 5 21157 1 0 22 Fusobacteriia 203490 class order 203491 Fusobacteriales 21 21152 3 0 1 family 203492 11 Fusobacteriaceae 0 1 17658 16 Fusobacterium 9 848 genus 20 16995 1 0 6047 0 1 Fusobacterium nucleatum 851 species 856 species 1 Fusobacterium varium 0 3975 1 Fusobacterium ulcerans 861 species 2975 0 0 405 1 Fusobacterium necrophorum 859 species 0 342 849 species Fusobacterium gonidiaformans 1 0 880 1 Fusobacterium hwasookii 1583098 species Fusobacterium periodonticum 1 860 species 1927 0 0 424 species 850 Fusobacterium mortiferum 1 0 647 167639 genus 1 647 0 Ilyobacter polytropus 1 167642 species 1 0 15 3491 9 Leptotrichiaceae 1129771 family 4 1940 1 0 5 Leptotrichia 32067 genus species 40542 1 Leptotrichia buccalis 479 0 3 no rank 2633022 0 1457 0 386 Leptotrichia sp. oral taxon 498 1 species 712368 0 735 712357 species Leptotrichia sp. oral taxon 212 1 1 Leptotrichia sp. oral taxon 847 species 1785996 336 0 819 0 32068 genus 1 Sebaldella termitidis 1 826 species 0 819 1 genus 34104 0 361 361 0 1 Streptobacillus moniliformis 34105 species 356 0 1 168808 genus 1 Sneathia amnii species 187101 356 0 0 1566 phylum 200930 6 68337 class 6 1566 0 0 1566 6 order 191393 family 191394 6 Deferribacteraceae 1566 5 0 1 1 378 1 0 Flexistipes 2 2351 genus 0 377 Flexistipes sinusarabici 1 2352 species 542 0 1 genus 545865 477976 species Calditerrivibrio nitroreducens 1 0 542 0 358 1 117999 genus 118000 species 1 Denitrovibrio acetiphilus 0 358 0 283 53572 genus 1 0 283 197162 species Deferribacter desulfuricans 1 8 508458 phylum 0 4277 4277 21 0 1 class 649775 8 Synergistia order 649776 7 Synergistales 4256 15 0 1 4241 1139 0 1 family 649777 Synergistaceae 6 genus 81461 1 0 263 0 263 species 81462 Thermanaerovibrio acidaminovorans 1 1 genus 508459 0 2099 0 2099 Cloacibacillus porcorum 1 1197717 species 1 genus 49894 227 0 0 227 Acetomicrobium mobile 1 97477 species 336260 genus 1 0 114 Thermovirga lienii 1 336261 species 114 0 399 0 81466 genus 1 81468 species 1 Aminobacterium colombiense 399 0 0 2547 40117 phylum 12 2547 2 0 1 class 203693 Nitrospira 12 189778 order 11 Nitrospirales 0 1 2545 12 10 Nitrospiraceae family 189779 1 0 6 2533 287 0 1 28261 genus Thermodesulfovibrio yellowstonii 1 28262 species 0 287 Nitrospira 5 genus 1234 1 0 2 1087 0 210 1 Nitrospira japonica 1325564 species Nitrospira moscoviensis 1 species 42253 0 439 species 1715989 1 Candidatus Nitrospira inopinata 0 138 0 298 330214 species 1 Nitrospira defluvii 179 genus 3 1153 0 440 0 261386 species group 1 440 0 1 Leptospirillum ferriphilum species 178606 0 451 1 261385 species group 1660083 species Leptospirillum sp. Group II 'CF-1' 1 451 0 1 species group 655606 262 0 262 0 Leptospirillum ferrooxidans 1 species 180 0 487 2 68297 phylum 0 487 2 class 203486 2 203487 order 0 487 2 203488 family 0 487 0 487 13 genus 2 248 0 1 Dictyoglomus turgidum 513050 species 0 239 Dictyoglomus thermophilum 1 species 14 0 1874 24 200783 phylum 1 0 6 1874 24 Aquificae 187857 class order 32069 18 Aquificales 1536 2 0 1 5 Hydrogenothermaceae 224027 family 1 565 1 0 369 1 0 1 genus 212790 3 Sulfurihydrogenibium 309806 species 1 Sulfurihydrogenibium azorense 110 0 258 0 1 2619248 no rank species 436114 1 Sulfurihydrogenibium sp. YO3AOP1 258 0 195 0 1 genus 182899 1 Persephonella marina species 309805 195 0 838 3 0 1 64898 family Aquificaceae 11 6 Hydrogenobaculum 168657 genus 1 0 13 441 0 428 5 2622382 no rank 1 Hydrogenobaculum sp. 3684 species 547143 98 0 1 Hydrogenobaculum sp. SHO species 547145 98 0 species 380749 1 Hydrogenobaculum sp. Y04AAS1 36 0 1 Hydrogenobaculum sp. HO species 547144 0 98 98 0 547146 species 1 Hydrogenobaculum sp. SN 2 75905 genus 0 253 1 Thermocrinis albus 136094 species 0 139 114 0 Thermocrinis ruber 1 species 75906 1 939 genus 0 68 68 0 940 species 1 Hydrogenobacter thermophilus genus 2713 1 0 73 species 63363 Aquifex aeolicus 1 0 73 1 no rank 90150 0 131 0 131 genus 412592 1 Thermosulfidibacter takaii 1 species 412593 0 131 332 0 5 order 1485951 family 558314 5 Desulfurobacteriaceae 332 1 0 1 171868 genus 2 Thermovibrio 120 1 0 1 Thermovibrio ammonificans 1 228745 species 0 119 2 Desulfurobacterium genus 64159 1 211 1 0 210 0 species 64160 1 Desulfurobacterium thermolithotrophum 1 0 892 1020818 Proteobacteria 1926 phylum 1224 4 580370 class 654 0 654 6 0 1 order 580371 Mariprofundales 4 580372 family Mariprofundaceae 3 648 8 0 1 640 0 genus 377315 2 0 314 1921086 species Mariprofundus aestuarium 1 0 326 species 1921087 1 Mariprofundus ferrinatatus 1 0 615 134834 Alphaproteobacteria 526 28211 class Rhizobiales 204 order 356 1 0 592 56422 15 Methylobacteriaceae family 119045 1 0 29 5116 2 Microvirga genus 186650 6 531 1 0 species 1882682 Microvirga ossetica 1 525 0 genus 407 9 Methylobacterium 0 1 2566 88 Methylobacterium aquaticum 1 species 270351 297 0 0 317 114616 species 1 Methylobacterium nodulans no rank 2615210 3 0 896 344 0 Methylobacterium sp. AMS5 1 species 925818 1 Methylobacterium sp. C1 species 1479019 285 0 1 Methylobacterium sp. 4-46 426117 species 0 267 1 Methylobacterium oryzae 334852 species 0 268 0 330 1 Methylobacterium phyllosphaerae species 418223 31998 species 1 Methylobacterium radiotolerans 0 370 0 1990 2282523 genus 3 29429 species 1 Methylobacterium zatmanii 356 0 408 species Methylobacterium extorquens 1 0 1156 1 Methylobacterium populi species 223967 0 478 11 5128 1 0 Phyllobacteriaceae 19 family 69277 genus 449972 2 Chelativorans 0 1 706 6 1 no rank 2643807 700 0 0 700 Chelativorans sp. BNC1 1 species 266779 1 0 99 2975 9 Mesorhizobium 68287 genus 381 species 1 Mesorhizobium loti 423 0 1 Mesorhizobium opportunistum species 593909 394 0 Mesorhizobium ciceri 1 39645 species 0 487 no rank 325217 1 0 350 species 278153 Mesorhizobium sp. WSM1497 1 0 350 Mesorhizobium sp. B7 1 species 1670800 0 218 364 0 Mesorhizobium amorphae 1 71433 species Mesorhizobium japonicum 1 2066070 species 320 0 1 Mesorhizobium australicum species 536018 0 320 0 389 1 genus 245876 0 389 472175 species 1 Nitratireductor basaltis 28100 genus 2 Phyllobacterium 0 1 375 1 species 1867719 Phyllobacterium zundukense 1 0 374 Aminobacter 2 genus 31988 4 389 1 0 385 0 1 Aminobacter aminovorans 83263 species 274591 genus 2 Hoeflea 283 2 0 1 1 no rank 2614931 0 281 0 281 1 Hoeflea sp. IMCC20628 species 1620421 6 1804 1 0 Aurantimonadaceae 6 family 255475 1 414371 genus 0 392 392 0 1 2615206 no rank 0 392 species 1349819 Aureimonas sp. AU20 1 genus 293088 Martelella 4 1406 35 0 1 no rank 2629616 1 383 0 686597 species 1 Martelella sp. AD-3 383 0 0 507 293089 species Martelella mediterranea 1 481 0 species 1486262 1 Martelella endophytica 52 Rhizobiaceae 82115 family 1 0 168 20879 387 0 5 34019 genus Liberibacter crescens 1 1273132 species 74 0 60 0 Candidatus Liberibacter americanus 1 species 309868 101 0 1 Candidatus Liberibacter solanacearum species 556287 species 34020 1 Candidatus Liberibacter africanus 72 0 1 Candidatus Liberibacter asiaticus species 34021 80 0 4352 0 227292 no rank 10 Ensifer 3 106591 genus 20 763 1 0 454 0 1 Ensifer adhaerens species 106592 0 289 1 Ensifer sojae 716925 species 1 0 64 3589 Sinorhizobium 7 28105 genus 2 2613772 no rank 821 0 1842534 species Sinorhizobium sp. RAC02 1 0 497 324 0 1 Sinorhizobium sp. CCBAU 05631 794846 species species 110321 Sinorhizobium medicae 1 457 0 938 0 Sinorhizobium meliloti 1 species 382 445 0 species 194963 Sinorhizobium americanum 1 0 864 species group 663276 1 380 species Sinorhizobium fredii 1 864 0 no rank 227290 34 0 15388 3947 52 0 1 357 genus 7 Agrobacterium 414 0 species 359 Agrobacterium rhizogenes 1 2 species group 1183400 0 2284 0 1816 358 species Agrobacterium tumefaciens 1 species 1176649 1 Agrobacterium fabrum 468 0 2 no rank 2632611 668 0 Agrobacterium sp. RAC06 1 1842536 species 296 0 species 861208 1 Agrobacterium sp. H13-3 0 372 1 Agrobacterium vitis 373 species 529 0 genus 379 25 Rhizobium 10730 767 0 1 2489 0 384 species 1 Rhizobium leguminosarum 1 Rhizobium tropici species 398 392 0 0 991 Rhizobium etli 1 species 29449 19 2613769 no rank 0 5004 0 328 species 2020312 Rhizobium sp. CIAT894 1 2020311 species Rhizobium sp. Kim5 1 261 0 1 0 Rhizobium sp. N871 1 1703968 species 0 63 1703961 species 1 Rhizobium sp. N1314 0 374 Rhizobium sp. NXC14 1 1981173 species 0 603 1 Rhizobium sp. ACO-34A species 1571470 1 Rhizobium sp. S41 species 1869170 252 0 1 Rhizobium sp. N731 species 1703966 0 63 1 Rhizobium sp. N324 species 1703969 602 0 species 1125847 1 Rhizobium sp. NT-26 0 225 1301032 species 1 Rhizobium sp. IE4771 230 0 424182 species Rhizobium sp. IRBG74 1 0 432 1703967 species 1 Rhizobium sp. N741 0 1 0 492 Rhizobium sp. 10195 1 2028343 species 1 Rhizobium sp. N113 1703960 species 0 7 7 0 Rhizobium sp. N1341 1 1703962 species 0 69 1 Rhizobium sp. TAL182 species 2020313 0 366 species 1914541 1 Rhizobium sp. Y9 0 628 1 Rhizobium sp. NXC24 species 2048897 680 0 1 Rhizobium phaseoli species 396 1 Rhizobium gallicum 56730 species 407 0 genus 1525371 2 Neorhizobium 0 1 711 11 399 species Neorhizobium galegae 1 0 700 1 0 39 584 2 Shinella 323620 genus 2643062 no rank 1 0 545 species 879274 Shinella sp. HZN7 1 545 0 0 452 45404 family 4 210 2 0 1 genus 120652 2 Methylocella 0 208 species 199596 1 Methylocella silvestris genus 532 Beijerinckia 2 242 1 0 1 species 533 1 Beijerinckia indica 241 0 Xanthobacteraceae 7 family 335928 1 0 40 1493 0 1 292 18 152053 genus Starkeya 2 921 species Starkeya novella 1 0 274 genus 6 2 Azorhizobium 474 11 0 1 463 0 1 Azorhizobium caulinodans 7 species 687 8 0 1 genus 279 Xanthobacter 2 679 0 species 280 1 Xanthobacter autotrophicus 0 1136 5 119042 no rank 2 Pseudorhodoplanes genus 1734920 1 0 13 315 1 Pseudorhodoplanes sinuspersici species 1235591 0 302 genus 1484898 1 423 0 Methyloceanibacter caenitepidi 1 species 1384459 423 0 2 Hartmannibacter genus 1572860 1 0 23 398 375 0 1482074 species Hartmannibacter diazotrophicus 1 0 269 family 119043 2 269 8 0 1 genus 256616 2 Parvibaculum 261 0 1 Parvibaculum lavamentivorans species 256618 family 31993 6 Methylocystaceae 689 2 0 1 1 0 11 299 Methylocystis 3 genus 133 129 0 1 Methylocystis bryophila species 655015 159 0 1 no rank 2625913 1 Methylocystis sp. SC2 187303 species 159 0 425 genus Methylosinus 2 0 1 388 3 385 0 426 species 1 Methylosinus trichosporium 772 family Bartonellaceae 18 2302 1 0 1 Bartonella 17 genus 773 14 2301 1 0 98 0 1 Bartonella australis species 388640 0 64 Bartonella henselae 1 38323 species 206 0 1 Bartonella grahamii 33045 species 774 species Bartonella bacilliformis 1 151 0 752 0 species 1686310 Bartonella apis 1 Bartonella ancashensis 1 1318743 species 0 83 1 Bartonella clarridgeiae species 56426 158 0 61 0 33047 species 1 Bartonella vinsonii 6 no rank 2645622 0 353 83 0 1 Bartonella sp. WD16.2 1933904 species 0 51 species 1933910 Bartonella sp. A1379B 1 Bartonella sp. Raccoon60 1 species 1933912 0 41 Bartonella sp. JB63 1 1933907 species 69 0 0 69 species 1933906 Bartonella sp. JB15 1 1 Bartonella sp. 1-1C species 515256 40 0 1 Bartonella tribocorum 85701 species 0 86 0 275 803 species 1 Bartonella quintana 118882 family 20 Brucellaceae 0 1 3177 33 2075 24 0 1 528 genus 5 Ochrobactrum 529 species 1 Ochrobactrum anthropi 0 643 271865 species 1 Ochrobactrum sp. A44 0 357 species 571256 Ochrobactrum pituitosum 1 531 0 520 0 species 419475 Ochrobactrum pseudogrignonense 1 Brucella 14 234 genus 1 0 481 1069 Brucella ceti 1 120577 species 34 0 0 36 36855 species 1 Brucella canis 29461 species 1 Brucella suis 20 0 0 287 4 2632610 no rank 1 Brucella sp. 09RB8471 1149952 species 141 0 58 0 1 Brucella sp. 09RB8910 species 1844051 8 0 species 1891098 Brucella sp. 2002734562 1 1 Brucella sp. 141012304 species 1885919 80 0 species 235 Brucella abortus 1 0 13 Brucella microti 1 species 444163 0 17 Brucella vulpis 1 species 981386 66 0 species 120576 1 Brucella pinnipedialis 59 0 1 Brucella ovis 236 species 37 0 Brucella melitensis 1 species 29459 0 19 4045 10 0 1 family 45401 19 Hyphomicrobiaceae 2 Blastochloris 59282 genus 14 473 1 0 0 459 Blastochloris viridis 1 1079 species 0 1 232 1 119044 genus 2 Filomicrobium 0 231 Candidatus Filomicrobium marinum 1 1608628 species 4 Devosia genus 46913 1 0 25 1187 1162 0 no rank 196773 3 0 391 Devosia sp. I507 1 species 2083786 1 Devosia sp. H5989 1643450 species 0 362 species 1736675 1 Devosia sp. A16 0 409 2 Pelagibacterium 1082930 genus 5 196 1 0 191 0 531813 species Pelagibacterium halotolerans 1 29407 genus 2 Rhodoplanes 0 1 383 33 1 no rank 2619116 0 350 0 350 1 Rhodoplanes sp. Z2-YC6860 species 674703 81 1140 1 0 Hyphomicrobium 4 81 genus 1 2619925 no rank 293 0 717785 species Hyphomicrobium sp. MC1 1 293 0 302 0 Hyphomicrobium nitrativorans 1 species 1427356 53399 species Hyphomicrobium denitrificans 1 0 464 424 2 0 1 genus 1068 2 Rhodomicrobium 0 422 1069 species 1 Rhodomicrobium vannielii 8682 168 0 1 family 41294 26 Bradyrhizobiaceae 2 145 1 0 2 Variibacter 1649510 genus 143 0 species 1333996 Variibacter gotjawalensis 1 374 genus 11 Bradyrhizobium 3915 150 0 1 0 1855 6 no rank 2631580 288000 species 1 Bradyrhizobium sp. BTAi1 0 371 Bradyrhizobium sp. ORS 285 1 species 115808 0 266 285 0 Bradyrhizobium sp. 1 species 376 Bradyrhizobium sp. CCGE-LA001 1 1223566 species 335 0 0 291 1 Bradyrhizobium sp. ORS 278 114615 species 307 0 1 Bradyrhizobium sp. SK17 2057741 species 1 Bradyrhizobium diazoefficiens species 1355477 620 0 359 0 1 Bradyrhizobium icense species 1274631 0 379 Bradyrhizobium oligotrophicum 1 species 44255 552 0 Bradyrhizobium japonicum 1 375 species 0 1 2075 16 1073 genus 2 Rhodopseudomonas 0 2059 Rhodopseudomonas palustris 1 species 1076 1 0 4 370 3 Nitrobacter 911 genus 0 209 1 Nitrobacter hamburgensis species 912 157 0 Nitrobacter winogradskyi 1 species 913 genus 40136 Oligotropha 2 196 8 0 1 Oligotropha carboxidovorans 1 species 40137 0 188 85413 genus Bosea 5 1813 32 0 1 3 2653178 no rank 1347 0 1 Bosea sp. RAC05 1842539 species 409 0 2015316 species 1 Bosea sp. AS-1 571 0 species 1792307 1 Bosea sp. PAMC 26642 0 367 0 434 1 Bosea vaviloviae 1526658 species 4 Chelatococcaceae 2036754 family 2 658 1 0 0 1 656 14 28209 genus Chelatococcus 3 444444 species 1 Chelatococcus daeguensis 0 308 0 334 2638111 no rank 1 1 Chelatococcus sp. CO-6 1702325 species 0 334 80 Sphingomonadales 204457 order 1 0 276 20395 1 0 129 4769 22 Erythrobacteraceae 335929 family 323 0 2 genus 2800686 153 0 1 Altererythrobacter mangrovi species 1982042 170 0 1 Altererythrobacter dongtanensis 692370 species 0 283 genus 2800685 1 283 0 1 Altererythrobacter marensis species 543877 0 1175 no rank 2800788 6 Erythrobacter 3 1041 genus 1 0 32 742 1 Porphyrobacter neustonensis species 1112 199 0 Erythrobacter litoralis 1 39960 species 511 0 3 Porphyrobacter 1111 genus 1 0 45 433 2 no rank 2683265 388 0 Porphyrobacter sp. LM 6 1 species 1896196 0 194 species 2023229 Porphyrobacter HT-58-2 1 194 0 2800681 genus 2 541 0 species 1648404 1 Erythrobacter atlanticus 0 158 0 383 species 502682 1 Erythrobacter gangjinensis 637 14 0 1 1295327 genus Croceicoccus 3 1348774 species 1 Croceicoccus naphthovorans 0 370 0 253 species 450378 Croceicoccus marinus 1 361177 genus Altererythrobacter 4 0 1 640 44 0 362 1267766 species Altererythrobacter atlanticus 1 species 361183 Altererythrobacter epoxidivorans 1 0 92 1 Altererythrobacter ishigakiensis species 476157 142 0 311 0 genus 2800682 1 311 0 species 645517 1 Altererythrobacter namhicola genus 1855416 2 0 730 Erythrobacter seohaensis 1 266951 species 528 0 0 202 Erythrobacter flavus 1 192812 species 0 1 15350 253 41297 family 57 Sphingomonadaceae 5 Novosphingobium 165696 genus 1 0 40 1099 193 0 1 2644732 no rank Novosphingobium sp. PP1Y 1 species 702113 193 0 Novosphingobium pentaromativorans 1 205844 species 0 287 1 Novosphingobium aromaticivorans 48935 species 214 0 0 365 1 Novosphingobium resinovorum species 158500 653 5 0 1 1434046 genus Sphingorhabdus 3 648 0 2 2614947 no rank 334 0 species 2077182 1 Sphingorhabdus sp. YGSMI21 314 0 species 1806885 1 Sphingorhabdus sp. M41 1 2709685 genus 0 231 species 266812 1 Sphingorhabdus flavimaris 0 231 121 5018 1 0 15 Sphingobium 165695 genus 1 Sphingobium herbicidovorans 76947 species 335 0 0 2047 6 2611147 no rank 0 379 Sphingobium sp. TKS 1 species 1315974 Sphingobium sp. RAC03 1 1843368 species 440 0 339 0 Sphingobium sp. YBL2 1 species 484429 0 178 Sphingobium sp. EP60837 1 1855519 species species 627192 1 Sphingobium sp. SYK-6 265 0 446 0 Sphingobium sp. MI1205 1 407020 species 1 Sphingobium chlorophenolicum 46429 species 425 0 0 335 species 1332080 Sphingobium baderi 1 1 Sphingobium yanoikuyae species 13690 0 363 308 0 332055 species Sphingobium indicum 1 0 389 Sphingobium cloacae 1 120107 species 314 0 species 1673076 1 Sphingobium hydrophobicum 1 Sphingobium japonicum species 332056 381 0 72173 genus 1 343 0 0 343 2630544 no rank 1 species 1634516 Citromicrobium sp. JL477 1 343 0 genus 541 Zymomonas 2 505 5 0 1 542 species 1 Zymomonas mobilis 0 500 Blastomonas 2 150203 genus 1 281 1 0 1 2626550 no rank 280 0 0 280 1 Blastomonas sp. RAC04 species 1842535 genus 13687 15 Sphingomonas 4016 97 0 1 408 0 397260 species Sphingomonas sanxanigenens 1 1 Sphingomonas melonis 152682 species 307 0 0 1726 no rank 196159 6 263 0 1961362 species Sphingomonas sp. NIC1 1 1 Sphingomonas sp. MM-1 745310 species 415 0 0 251 1 Sphingomonas sp. LM7 1938607 species 202 0 species 1030157 1 Sphingomonas sp. KC8 1 Sphingomonas sp. LK11 1390395 species 0 396 0 199 1 Sphingomonas sp. Cra20 species 1327635 species 1549858 1 Sphingomonas taxi 151 0 0 296 1 Sphingomonas panacis 1560345 species species 93064 1 Sphingomonas koreensis 0 263 species 160791 Sphingomonas wittichii 2 0 1 487 233 1283312 strain Sphingomonas sp. DC-6 1 254 0 1609977 species Sphingomonas hengshuiensis 1 0 281 0 339 1 genus 2685927 0 339 Sphingomonas sp. JJ-A5 1 1921510 species 385 0 1 1649486 genus 0 385 1 Rhizorhabdus dicambivorans 1850238 species 10 Sphingopyxis 165697 genus 34 2227 1 0 470 0 1 Sphingopyxis macrogoltabida 33050 species Sphingopyxis granuli 1 267128 species 0 310 117207 species 1 Sphingopyxis alaskensis 143 0 0 219 Sphingopyxis fribergensis 1 species 1515612 1 Sphingopyxis terrae 33052 species 182 0 4 2614943 no rank 869 0 1 Sphingopyxis sp. 113P3 292913 species 0 230 species 1357916 Sphingopyxis sp. QXT-31 1 0 309 189 0 1 Sphingopyxis sp. MG 1866325 species 0 141 1 Sphingopyxis sp. LPB0140 1913578 species 766 order 48 Rickettsiales 3267 2 0 1 1 1328881 family 122 0 0 122 1 411566 genus 1 Candidatus Midichloria mitochondrii species 234827 122 0 775 family 25 1560 0 1502 0 33988 tribe 24 genus 780 23 Rickettsia 0 1 1412 96 0 734 17 species group 114277 Rickettsia japonica 1 species 35790 0 14 124 0 42862 species 1 Rickettsia felis 0 16 species 35792 1 Rickettsia parkeri 1 Rickettsia heilongjiangensis 226665 species 65 0 783 species 1 Rickettsia rickettsii 11 0 1 Rickettsia africae 35788 species 11 0 35794 species 1 Rickettsia slovaca 7 0 1 Rickettsia rhipicephali 33992 species 0 30 13 0 Rickettsia conorii 1 781 species species 47589 Rickettsia peacockii 1 46 0 species 109232 Rickettsia monacensis 1 71 0 species 787 Rickettsia australis 1 123 0 38 0 1 Rickettsia montanensis 33991 species species 786 Rickettsia akari 1 0 91 0 50 species 33989 Rickettsia amblyommatis 1 species 35791 1 Rickettsia massiliae 0 12 12 0 1105106 species Rickettsia philipii 1 1129742 species group 2 190 0 75 0 33990 species Rickettsia bellii 1 115 0 species 788 1 Rickettsia canadensis 0 226 1 114295 no rank species 337479 Rickettsia endosymbiont of Bemisia tabaci 1 226 0 114292 species group 2 166 0 104 0 785 species 1 Rickettsia typhi 1 Rickettsia prowazekii species 782 0 62 0 90 69474 genus 1 1 Orientia tsutsugamushi 784 species 90 0 2115980 genus 1 0 58 0 58 Candidatus Phycorickettsia trachydisci 1 species 2115978 1 1699067 no rank 164 0 Rickettsiales bacterium Ac37b 1 1528098 species 0 164 942 family 20 Anaplasmataceae 0 1 1419 2 8 tribe 952 643 0 genus 953 Wolbachia 8 643 7 0 1 0 636 7 2640676 no rank Wolbachia endosymbiont of Onchocerca ochengi 1 100901 species 0 85 120 0 Wolbachia sp. wRi 1 species 66084 163164 species 1 Wolbachia endosymbiont of Drosophila melanogaster 0 36 species 77551 1 Wolbachia endosymbiont of Onchocerca volvulus 79 0 Wolbachia endosymbiont of Brugia malayi 1 species 80849 0 81 215 0 Wolbachia endosymbiont of Drosophila simulans 1 77038 species species 246273 Wolbachia endosymbiont of Cimex lectularius 1 0 20 33993 genus 3 0 132 36 0 1 Neorickettsia helminthoeca 33994 species species 951 Neorickettsia sennetsu 1 0 11 1 Neorickettsia risticii species 950 0 85 0 363 5 genus 943 297 0 species group 106178 4 46 0 1 Ehrlichia canis 944 species 69 0 35795 species Ehrlichia muris 1 122 0 779 species Ehrlichia ruminantium 1 1 Ehrlichia chaffeensis 945 species 0 60 0 66 1 no rank 106181 66 0 Ehrlichia sp. HF 1 species 391036 genus 768 3 0 279 0 189 1 106179 species group 189 0 species 948 Anaplasma phagocytophilum 1 Anaplasma centrale 1 769 species 51 0 0 39 1 Anaplasma marginale 770 species 0 1310 82117 no rank 8 Micavibrio 2 genus 213485 17 414 1 0 397 0 349221 species Micavibrio aeruginosavorus 1 336 41 0 1 genus 991903 Polymorphum 2 0 295 991904 species Polymorphum gilvum 1 1 0 12 370 2 Phreatobacter 1632780 genus 358 0 1 Phreatobacter sp. S-12 species 1868589 190 0 clade 62654 2 genus 767891 Candidatus Puniceispirillum 2 0 1 190 3 187 0 species 767892 Candidatus Puniceispirillum marinum 1 83 Rhodobacterales 204455 order 590 24761 1 0 0 1 24171 666 family 31989 Rhodobacteraceae 82 Confluentimicrobium 2 1609958 genus 1 0 5 461 1 2643318 no rank 456 0 456 0 1 Confluentimicrobium sp. EMB200-NS6 species 1609966 305 0 genus 309512 1 species 215813 Dinoroseobacter shibae 1 305 0 2 Leisingera 191028 genus 1 314 1 0 313 0 133924 species 1 Leisingera methylohalidivorans genus 188905 2 Jannaschia 0 1 333 1 2645469 no rank 1 0 332 species 290400 Jannaschia sp. CCS1 1 332 0 1 genus 74030 0 229 species 215743 Roseovarius mucosus 1 229 0 2 genus 263377 0 682 1 no rank 2640570 0 339 1792508 species Yangia sp. CCB-MM3 1 0 339 1 Thiobacimonas profunda species 1229727 343 0 1531 34 0 1 genus 478070 4 Labrenzia 0 1125 2 2648686 no rank species 2021862 Labrenzia sp. VG12 1 738 0 0 387 species 1674922 1 Labrenzia sp. CP4 1 Labrenzia aggregata 187304 species 372 0 Tateyamaria 2 299261 genus 1 0 1 405 0 404 Tateyamaria omphalii 1 species 299262 1579315 genus 1 113 0 species 1579316 Halocynthiibacter arcticus 1 0 113 2 no rank 58840 0 687 0 333 species 2033435 Rhodobacteraceae bacterium QY30 1 0 354 species 1904441 1 Rhodobacteraceae bacterium Pannonibacter 2 227873 genus 26 632 1 0 1 Pannonibacter phragmitetus 121719 species 606 0 1 genus 1097466 0 426 1 Defluviimonas alba species 1335048 426 0 92944 genus 3 Ketogulonicigenium 397 1 0 1 species 92947 1 Ketogulonicigenium robustum 172 0 0 224 Ketogulonicigenium vulgare 1 92945 species 49 1736 1 0 Rhodobacter 5 genus 1060 1 Rhodobacter capsulatus species 1061 263 0 1 Rhodobacter sphaeroides species 1063 938 0 0 486 no rank 196779 2 1850250 species 1 Rhodobacter sp. LPB0142 0 158 1 Rhodobacter sp. CZR27 species 2033869 328 0 1 genus 1284657 279 0 0 279 1 Planktomarina temperata 1284658 species 480 0 genus 2211641 1 480 0 species 245188 1 Loktanella vestfoldensis 97050 genus Ruegeria 3 782 2 0 1 370 0 no rank 2625375 1 292414 species Ruegeria sp. TM1040 1 0 370 Ruegeria pomeroyi 1 89184 species 410 0 genus 1759396 Marivivens 2 0 1 263 1 0 262 1 no rank 2622455 species 1920883 Marivivens sp. JLT3646 1 0 262 1 0 4 522 4 Octadecabacter genus 53945 1458307 species 1 Octadecabacter temperatus 0 126 53946 species 1 Octadecabacter arcticus 189 0 Octadecabacter antarcticus 1 1217908 species 0 203 genus 34008 Rhodovulum 4 1043 5 0 1 2631432 no rank 2 575 0 0 249 Rhodovulum sp. P5 1 species 1564506 1 Rhodovulum sp. MB263 308754 species 326 0 463 0 35806 species 1 Rhodovulum sulfidophilum 4 genus 875170 0 1268 Celeribacter marinus 1 1397108 species 0 250 0 399 1 Celeribacter manganoxidans 1411902 species species 1758178 1 Celeribacter ethanolicus 0 268 species 1208324 1 Celeribacter indicus 0 351 0 403 genus 367771 1 0 403 species 42444 1 Marinovum algicola 0 541 2 2433 genus 302 0 species 2434 Roseobacter denitrificans 1 Roseobacter litoralis 1 42443 species 239 0 genus 60136 3 Sulfitobacter 0 1 585 1 1 Sulfitobacter pseudonitzschiae 1402135 species 0 300 284 0 1 no rank 196795 0 284 species 1917485 Sulfitobacter sp. AM1-D1 1 0 154 285107 genus 1 Thioclava nitratireducens 1 species 1915078 154 0 5 Phaeobacter 302485 genus 49 2964 1 0 Phaeobacter inhibens 1 221822 species 0 1085 199 0 1844006 species 1 Phaeobacter porticola 853 0 species 1580596 1 Phaeobacter piscinae Phaeobacter gallaeciensis 1 species 60890 0 778 Pelagibaca 2 360528 genus 1 0 3 350 347 0 species 1250539 1 Pelagibaca abyssi 245186 genus 1 Loktanella 0 1 genus 58842 Sagittula 2 0 1 480 2 478 0 1 no rank 2624628 1 Sagittula sp. P11 2009329 species 0 478 36 3180 1 0 Paracoccus 9 265 genus 0 450 1945662 species 1 Paracoccus contaminans 263 0 Paracoccus aminovorans 1 species 34004 Paracoccus sp. CBA4604 1 2065379 species 268 0 467 0 1 Paracoccus zhejiangensis species 1077935 species 147645 Paracoccus yeei 1 520 0 species 34003 1 Paracoccus aminophilus 0 234 Paracoccus denitrificans 1 species 266 0 643 0 299 246570 no rank 1 Paracoccus sp. BM15 1 1529068 species 0 299 1 231 1 0 2 Roseibacterium genus 159345 Roseibacterium elongatum 1 159346 species 230 0 0 560 1 1649279 genus 1 Ruegeria mobilis 379347 species 560 0 2 Rhodobaca genus 119541 1 0 1 284 283 0 1 Rhodobaca barguzinensis species 441209 74032 genus 1 0 884 1 Antarctobacter heliothermus 74033 species 0 884 0 409 4 1921002 order family 2100208 1 115 0 1509243 genus 1 0 115 115 0 1509244 species 1 Candidatus Nucleicultrix amoebiphila 1 1777752 family 0 86 1 1521255 genus 0 86 Candidatus Paracaedibacter acanthamoebae 1 91604 species 86 0 2 Holosporaceae family 44746 2 208 1 0 206 0 1 204454 no rank 206 0 species 86106 endosymbiont of Acanthamoeba sp. UWC8 1 order 1191478 Magnetococcales 2 0 1 382 3 379 0 family 1191479 1 genus 162171 1 379 0 1124597 species Magnetococcus marinus 1 379 0 4827 52 0 1 204458 order Caulobacterales 20 Caulobacteraceae 19 family 76892 1 0 83 4775 no rank 81440 1 0 150 150 0 1759059 species Caulobacteraceae bacterium OTSz_A_272 1 0 1 1513 90 genus 41275 Brevundimonas 7 species 588932 1 Brevundimonas naejangsanensis 179 0 3 no rank 2622653 755 0 Brevundimonas sp. GW460-12-10-14-LB2 1 species 1827469 303 0 0 178 Brevundimonas sp. LM2 1 1938605 species Brevundimonas sp. DS20 1 1532555 species 274 0 species 74313 Brevundimonas subvibrioides 1 299 0 190 0 41276 species Brevundimonas vesicularis 1 0 1 458 51 76890 genus Asticcacaulis 2 0 407 1 Asticcacaulis excentricus species 78587 Phenylobacterium 2 genus 20 1 0 5 366 species 284016 Phenylobacterium zucineum 1 361 0 1 0 65 2205 Caulobacter 6 genus 75 0 318 species 88688 Caulobacter segnis 1 358 0 species 69666 1 Caulobacter mirabilis 1 2648921 no rank 0 365 1 Caulobacter sp. K31 366602 species 0 365 Caulobacter vibrioides 1 species 155892 0 877 1 Caulobacter henricii 69395 species 222 0 0 941 order 54526 6 5 family 1655514 0 882 1 134 1 0 Candidatus Pelagibacter 3 genus 198251 0 64 Candidatus Pelagibacter ubique 1 198252 species 1 2647897 no rank 69 0 1 Candidatus Pelagibacter sp. IMCC9063 species 1002672 0 69 748 0 no rank 1655516 2 0 114 744985 species alpha proteobacterium HIMB59 1 1 alpha proteobacterium HIMB5 species 859653 634 0 59 0 genus 2045213 1 Candidatus Fonsibacter ubiquis 1 1925548 species 59 0 order 255473 1 125 0 125 0 1 255474 family 125 0 1 208215 genus 125 0 Parvularcula bermudensis 1 208216 species 172 0 2 2800059 order 172 0 2 2800061 family 0 1 172 3 genus 74317 Maricaulis 2 1 Maricaulis maris 74318 species 169 0 order 204441 61 Rhodospirillales 0 1 20656 225 179 9976 1 0 29 Rhodospirillaceae 41295 family 626 3 0 1 1543705 genus Nitrospirillum 2 28077 species 1 Nitrospirillum amazonense 623 0 0 1 378 7 171436 genus 2 Tistrella 371 0 Tistrella mobilis 1 species 171437 4 278 1 0 2 Magnetospira genus 1182780 2685734 no rank 1 274 0 1 Magnetospira sp. QH-2 species 1288970 0 274 1 1263978 genus 175 0 1 Candidatus Endolissoclinum faulkneri species 1263979 0 175 genus 13134 Magnetospirillum 5 0 1 2434 30 0 460 84159 species 1 Magnetospirillum magneticum 819 0 55518 species 1 Magnetospirillum gryphiswaldense 2 no rank 2617991 1125 0 1 Magnetospirillum sp. XM-1 species 1663591 0 592 0 533 1639348 species 1 Magnetospirillum sp. ME-1 258 0 1 1612157 genus 258 0 1 Pararhodospirillum photometricum species 1084 Rhodospirillum 3 genus 1081 1 0 18 795 0 441 1 Rhodospirillum rubrum 1085 species 336 0 1 Rhodospirillum centenum 34018 species 3 Thalassospira 168934 genus 1 0 9 1019 0 418 species 2048283 1 Thalassospira sp. CSC3H3 0 592 220697 species Thalassospira xiamenensis 1 151 1 0 1 genus 1804663 2 Haematospirillum Haematospirillum jordaniae 1 species 1549855 0 150 182 3076 1 0 Azospirillum 5 genus 191 species 528244 Azospirillum thiophilum 1 599 0 species 193 Azospirillum lipoferum 1 1028 0 Azospirillum humicireducens 1 species 1226968 0 362 0 905 species 192 Azospirillum brasilense 1 0 1 607 4 1543704 genus 2 Niveispirillum Niveispirillum cyanobacteriorum 1 1612173 species 603 0 Acetobacteraceae 31 family 433 221 10455 1 0 Granulibacter 2 364409 genus 1 0 21 1065 364410 species 1 Granulibacter bethesdensis 1044 0 Roseomonas 3 125216 genus 1 0 22 712 355 0 Roseomonas gilardii 1 257708 species 335 0 2617492 no rank 1 species 2018065 1 Roseomonas sp. FDAARGOS_362 335 0 320496 genus 1 269 0 269 0 species 320497 1 Neoasaia chiangmaiensis 1 0 17 717 3 Acidiphilium 522 genus 376 0 524 species Acidiphilium cryptum 1 324 0 species 62140 Acidiphilium multivorum 1 0 1 405 11 genus 89583 2 Gluconacetobacter 394 0 1 Gluconacetobacter diazotrophicus species 33996 507 0 153497 genus 1 0 507 153496 species 1 Kozakia baliensis 1746 32 0 1 1434011 genus 5 Komagataeibacter Komagataeibacter europaeus 1 species 33995 231 0 396 0 Komagataeibacter medellinensis 1 1177712 species 0 338 species 265960 Komagataeibacter nataicola 1 0 749 28448 species Komagataeibacter xylinus 1 0 229 genus 91914 1 0 229 Asaia bogorensis 1 species 91915 434 genus Acetobacter 8 0 1 3293 49 1 Acetobacter senegalensis 446692 species 300 0 1 Acetobacter tropicalis 104102 species 237 0 0 366 Acetobacter pomorum 1 65959 species Acetobacter oryzifermentans 1 species 1633874 364 0 151157 subgenus 1 452 0 452 0 1 Acetobacter aceti species 435 1 Acetobacter pasteurianus species 438 0 1235 290 0 species 1076596 1 Acetobacter persici 2 972 1 0 3 Gluconobacter 441 genus 0 365 1 Gluconobacter albidus 318683 species 0 605 species 442 1 Gluconobacter oxydans 319 0 1 genus 1602345 0 319 1510841 species Parasaccharibacter apium 1 0 552 2800060 order 6 69657 family 6 Hyphomonadaceae 0 1 552 2 1 0 9 454 3 Hyphomonas genus 85 0 247 Hyphomonas neptunium 1 81032 species 0 198 1 2630699 no rank Hyphomonas sp. Mor2 1 1906738 species 0 198 Hirschia 2 2723 genus 1 0 1 96 Hirschia baltica 1 species 2724 95 0 1553900 class 9 Oligoflexia 2048 15 0 1 546 0 2024979 order 3 301 0 1 family 263369 146784 genus 1 301 0 0 301 species 960 Bacteriovorax stolpii 1 2 Halobacteriovoraceae 1652132 family 1 0 1 245 1 1652133 genus 244 0 244 0 97084 species 1 Halobacteriovorax marinus 5 Bdellovibrionales 213481 order 1 0 42 1487 family 213483 4 Bdellovibrionaceae 1445 3 0 1 1 0 6 1442 3 Bdellovibrio genus 958 0 151 453816 species 1 Bdellovibrio exovorus 0 1285 959 species Bdellovibrio bacteriovorus 1 subphylum 68525 185 0 110548 Epsilonproteobacteria 68 29547 class 85 37995 1 0 1 0 1180 37141 Campylobacterales 63 order 213849 0 1038 family 2771472 5 genus 265570 3 Sulfurovum 0 1 621 1 346 0 species 206403 1 Sulfurovum lithotrophicum 274 0 1 2646778 no rank Sulfurovum sp. NBC37-1 1 387093 species 0 274 genus 269260 2 Nitratifractor 417 1 0 1 Nitratifractor salsuginis 1 species 269261 0 416 72294 family 41 Campylobacteraceae 31588 1886 0 1 0 1773 no rank 2321108 5 1 2321187 genus 354 0 species 1850254 1 Arcobacter sp. LPB0137 0 354 genus 28196 3 Arcobacter 1064 7 0 1 1 Arcobacter nitrofigilis 28199 species 0 576 481 0 1 Arcobacter butzleri species 28197 1 no rank 2321207 355 0 944547 species 1 Arcobacter sp. L 355 0 1 0 338 26259 26 Campylobacter 194 genus 0 616 201 species Campylobacter lari 1 200 species Campylobacter curvus 1 0 167 0 269 1031542 species 1 Campylobacter volucris 4 no rank 2593542 526 0 1 Campylobacter sp. RM6137 1660073 species 0 52 92 0 species 1500960 Campylobacter sp. RM16704 1 224 0 1 Campylobacter sp. RM12175 species 1660076 0 158 Campylobacter sp. RM8964 1 species 1660074 160 0 species 76517 1 Campylobacter hominis 198 species Campylobacter hyointestinalis 1 0 171 1 Campylobacter lanienae 75658 species 636 0 82 0 Campylobacter helveticus 1 species 28898 0 1802 1 Campylobacter insulaenigrae species 260714 112 0 species 374106 Campylobacter cuniculorum 1 Campylobacter fetus 1 species 196 0 1248 323 0 1 Campylobacter sputorum species 206 1 Campylobacter coli species 195 7193 0 0 295 Campylobacter subantarcticus 1 497724 species Campylobacter concisus 1 species 199 1430 0 1 Campylobacter ureolyticus species 827 0 272 1 Campylobacter pinnipediorum 1965231 species 0 291 Campylobacter jejuni 1 species 197 0 9737 0 105 1244531 species Campylobacter iguaniorum 1 0 291 Campylobacter gracilis 1 species 824 species 522485 1 Campylobacter avium 77 0 0 118 Campylobacter peloridis 1 species 488546 57665 genus 9 Sulfurospirillum 0 1 1670 9 267 0 66821 species 1 Sulfurospirillum multivorans 0 236 366522 species Sulfurospirillum cavolei 1 44674 species Sulfurospirillum barnesii 1 199 0 1 Sulfurospirillum deleyianum species 65553 0 154 2618290 no rank 3 490 0 220622 species 1 Sulfurospirillum sp. JPD-1 0 147 1986224 species Sulfurospirillum sp. SL2-1 1 0 169 1581011 species Sulfurospirillum sp. UCH001 1 174 0 1 Sulfurospirillum halorespirans species 194424 0 315 2633 0 13 family 72293 1 2498 1 0 12 Helicobacter 209 genus 0 267 1 Helicobacter cinaedi 213 species 98 0 Helicobacter bilis 1 37372 species 0 67 2593540 no rank 1 1 Helicobacter sp. MIT 01-6242 222136 species 0 67 77 0 212 species 1 Helicobacter acinonychis 0 100 1 Helicobacter himalayensis species 1591088 32025 species Helicobacter hepaticus 1 112 0 210 species 1 Helicobacter pylori 1121 0 0 166 Helicobacter mustelae 1 species 217 1 Helicobacter typhlonius 76936 species 177 0 0 120 species 138563 1 Helicobacter cetorum 192 0 1 Helicobacter felis 214 species 1 genus 843 135 0 1 Wolinella succinogenes species 844 0 135 0 702 family 2771471 3 1 genus 286130 295 0 295 0 148813 species Sulfuricurvum kujiense 1 407 0 2 genus 202746 species 39766 Sulfurimonas denitrificans 1 0 198 species 202747 1 Sulfurimonas autotrophica 209 0 order 235899 Nautiliales 4 0 1 769 2 240 0 2795691 family 1 0 240 269258 genus 1 240 0 no rank 2624044 1 240 0 387092 species 1 Nitratiruptor sp. SB155-2 1 527 1 0 Nautiliaceae 2 family 224467 526 0 1 191291 genus 1 Nautilia profundicola 244787 species 526 0 72553 111 0 1 28221 class Deltaproteobacteria 117 34 5999 1 0 17 Desulfobacterales 213118 order 8 Desulfobacteraceae family 213119 21 3696 1 0 218207 genus 1 0 986 species 259354 1 Desulfatibacillum alkenivorans 986 0 1 758 1 0 2 Desulfobacterium 2295 genus 0 757 2296 species Desulfobacterium autotrophicum 1 0 734 genus 28222 1 Desulfobacula toluolica 1 species 28223 734 0 4 1197 1 0 Desulfococcus 3 896 genus species 897 1 Desulfococcus multivorans 0 614 Desulfococcus oleovorans 1 species 181663 579 0 17 2269 1 0 Desulfobulbaceae 8 213121 family 893 genus Desulfobulbus 2 1010 6 0 1 1004 0 Desulfobulbus sp. ORNL 1 species 1986146 624 2 0 1 427922 genus Desulfurivibrio 2 1 Desulfurivibrio alkaliphilus species 427923 0 622 0 352 109168 genus 1 0 352 1 Desulfotalea psychrophila 84980 species Desulfocapsa 2 genus 53318 7 266 1 0 1 Desulfocapsa sulfexigens species 65555 0 259 156 11302 1 0 Myxococcales 36 29 order 0 517 2 suborder 224462 224464 family 2 517 0 517 2 0 1 genus 162027 Haliangium 2 0 515 species 80816 1 Haliangium ochraceum suborder 80812 7 0 2377 0 1 1955 65 family 49 Polyangiaceae 5 1 0 4 428 Chondromyces 2 genus 50 1 Chondromyces crocatus species 52 0 424 genus 39643 2 Sorangium 1462 12 0 1 0 1450 species 56 1 Sorangium cellulosum 0 422 2 1055686 family 422 1 0 1 1055688 genus 2 Sandaracinus 927083 species Sandaracinus amylolyticus 1 421 0 0 8252 26 suborder 80811 9 Archangiaceae family 39 38 2798 1 0 40 genus 2 Stigmatella 556 2 0 1 Stigmatella aurantiaca 1 41 species 554 0 Cystobacter 2 42 genus 6 803 1 0 43 species Cystobacter fuscus 1 0 797 Melittangium 2 genus 44 6 681 1 0 species 83453 1 Melittangium boletus 0 675 47 genus 2 Archangium 720 4 0 1 0 716 Archangium gephyra 1 species 48 4 1417 1 0 5 Anaeromyxobacteraceae 1524215 family 22 1413 1 0 4 Anaeromyxobacter genus 161492 0 725 2 no rank 2620896 438 0 Anaeromyxobacter sp. Fw109-5 1 404589 species 1 Anaeromyxobacter sp. K species 447217 0 287 Anaeromyxobacter dehalogenans 1 species 161493 666 0 1 336 1 0 3 Vulgatibacteraceae family 1524213 3 335 1 0 2 Vulgatibacter 1524214 genus species 1391653 Vulgatibacter incomptus 1 0 332 9 Myxococcaceae family 31 1 0 33 3701 5 Myxococcus 32 genus 82 2566 1 0 1 Myxococcus xanthus 34 species 0 459 908 0 Myxococcus fulvus 1 species 33 Myxococcus hansupus 1 1297742 species 637 0 Myxococcus stipitatus 1 83455 species 0 480 3 Corallococcus genus 83461 1 0 11 1102 0 508 species 35 Myxococcus macrosporus 1 0 583 184914 species Corallococcus coralloides 1 1 0 5 666 4 Desulfarculales order 453227 Desulfarculaceae 3 453228 family 1 0 3 661 2 Desulfarculus genus 453229 1 0 4 658 453230 species 1 Desulfarculus baarsii 0 654 40016 109 0 1 213115 order 23 Desulfovibrionales 1 family 213117 454 0 0 454 1 genus 45662 0 454 45663 species 1 Desulfohalobium retbaense family 194924 17 Desulfovibrionaceae 0 1 37045 92 2582840 genus 1 0 1236 species 873 1 Desulfovibrio africanus 1236 0 41707 genus 1 1090 0 29546 species 1 Lawsonia intracellularis 1090 0 757 0 1 genus 2794998 757 0 species 880 1 Desulfovibrio salexigens 3658 19 0 1 genus 2035811 4 Pseudodesulfovibrio species 1716143 1 Pseudodesulfovibrio indicus 1644 0 Pseudodesulfovibrio aespoeensis 1 species 182210 1272 0 723 0 Pseudodesulfovibrio profundus 1 57320 species 9 Desulfovibrio 872 genus 1 0 201 30212 881 species Desulfovibrio vulgaris 1 8433 0 0 4091 Desulfovibrio desulfuricans 1 species 876 184917 species 1 Desulfovibrio magneticus 0 1930 4795 0 1 Desulfovibrio fairfieldensis species 44742 1 no rank 2593640 2373 0 0 2373 1 Desulfovibrio sp. G11 species 631220 Desulfovibrio piger 1 901 species 0 5927 0 808 1 Candidatus Desulfovibrio trichonymphae species 1725232 Desulfovibrio alaskensis 1 58180 species 1654 0 Desulfomicrobiaceae 4 213116 family 5 2408 1 0 Desulfomicrobium 3 898 genus 18 2403 1 0 899 species 1 Desulfomicrobium baculatum 0 1211 132132 species 1 Desulfomicrobium orale 0 1174 51 1916 1 0 10 Syntrophobacterales order 213462 2 family 213465 572 0 1 0 5 572 2 Syntrophobacter 29526 genus 119484 species Syntrophobacter fumaroxidans 1 0 567 family 213468 7 Syntrophaceae 0 1 1293 1 2 Desulfomonile 2357 genus 1 0 2 454 0 452 species 2358 Desulfomonile tiedjei 1 1 398 1 0 Desulfobacca 2 genus 60892 0 397 species 60893 1 Desulfobacca acetoxidans 5 440 1 0 2 Syntrophus 43773 genus 0 435 1 Syntrophus aciditrophicus species 316277 2 213113 order 0 285 285 0 family 117942 2 genus 84404 1 117 0 Hippea maritima 1 species 84405 0 117 0 168 1 genus 33001 1 Desulfurella acetivorans species 33002 0 168 69541 order Desulfuromonadales 24 0 1 12258 179 0 1 3355 21 213421 family Desulfuromonadaceae 9 18 genus Pelobacter 5 0 1 2381 6 667 0 1 Pelobacter propionicus 29543 species 1 Pelobacter carbinolicus 19 species 676 0 29542 species Pelobacter acetylenicus 1 506 0 0 526 2620299 no rank 1 species 1842532 1 Pelobacter sp. SFB93 0 526 3 Desulfuromonas 890 genus 5 953 1 0 1603606 species Desulfuromonas soudanensis 1 403 0 1 no rank 2614637 0 545 545 0 species 1823759 Desulfuromonas sp. DDH964 1 14 Geobacteraceae 213422 family 1 0 24 8724 1 0 203 7578 11 Geobacter 28231 genus 0 583 1 Geobacter anodireducens species 1340425 634 0 Geobacter pickeringii 1 species 345632 809 0 species 351604 1 Geobacter uraniireducens 518 0 Geobacter metallireducens 1 28232 species 781 0 225194 species Geobacter bemidjiensis 1 no rank 2627627 2 1859 0 0 882 Geobacter sp. M18 1 species 443143 977 0 species 443144 Geobacter sp. M21 1 0 640 35554 species 1 Geobacter sulfurreducens 313985 species Geobacter lovleyi 1 0 819 732 0 1 Geobacter daltonii species 1203471 2 Geoalkalibacter 392332 genus 1 0 7 1122 1115 0 Geoalkalibacter subterraneus 1 483547 species 0 750 6 class 1807140 0 1 750 10 225057 order Acidithiobacillales 6 3 740 1 0 Acidithiobacillaceae 5 225058 family 4 Acidithiobacillus 119977 genus 1 0 25 737 277 0 1 Acidithiobacillus ferrivorans 160808 species 236 0 33059 species Acidithiobacillus caldus 1 1 Acidithiobacillus ferrooxidans species 920 0 199 0 1 649836 1194 1236 class 855 Gammaproteobacteria 25502 78 0 1 order 135622 99 Alteromonadales family 267889 7 0 1635 0 327 genus 1518149 1 Thalassotalea crassostreae 1 species 1763536 0 327 1308 6 0 1 28228 genus 6 Colwellia 1967665 species Colwellia beringensis 1 163 0 3 196834 no rank 847 0 58049 species 1 Colwellia sp. MT41 0 311 Colwellia sp. PAMC 20917 1 1816218 species 0 325 1816219 species Colwellia sp. PAMC 21821 1 211 0 292 0 Colwellia psychrerythraea 1 28229 species 0 1 746 87 267893 family 6 Idiomarinaceae 0 1 659 15 135575 genus 5 Idiomarina 0 203 Idiomarina piscisalsi 1 species 1096243 no rank 2614829 2 0 240 species 2100422 1 Idiomarina sp. OT37-5b 118 0 0 122 2055892 species Idiomarina sp. X4 1 0 201 Idiomarina loihiensis 1 135577 species 0 1 556 5 267892 family 2 Ferrimonadaceae 1 44011 genus 0 551 551 0 44012 species Ferrimonas balearica 1 267890 family Shewanellaceae 25 6697 64 0 1 0 1 6633 75 genus 22 24 Shewanella Shewanella baltica 1 species 62322 690 0 404011 species Shewanella piezotolerans 1 0 232 species 2018305 1 Shewanella bicestrii 0 277 Shewanella denitrificans 1 192073 species 233 0 1 Shewanella japonica 93973 species 0 117 351 0 1 Shewanella violacea 60217 species 60478 species Shewanella amazonensis 1 0 556 Shewanella pealeana 1 species 70864 210 0 280 0 70863 species Shewanella oneidensis 1 297 0 species 260364 Shewanella marisflavi 1 species 225848 1 Shewanella psychrophila 0 247 0 313 Shewanella loihica 1 359303 species 1 Shewanella halifaxensis species 271098 0 146 Shewanella sediminis 1 271097 species 0 237 1 Shewanella frigidimarina 56812 species 0 260 0 154 1 Shewanella woodyi 60961 species Shewanella putrefaciens 1 24 species 280 0 6 no rank 196818 1678 0 Shewanella sp. Pdp11 1 2059264 species 184 0 351745 species Shewanella sp. W3-18-1 1 206 0 300 0 94122 species 1 Shewanella sp. ANA-3 species 60481 Shewanella sp. MR-7 1 414 0 Shewanella sp. MR-4 1 60480 species 326 0 0 248 Shewanella sp. WE21 1 species 2029986 28 Alteromonadaceae family 72275 22 8674 1 0 1 0 21 3074 10 Alteromonas 226 genus 0 122 1 Alteromonas naphthalenivorans 715451 species species 589873 1 Alteromonas australica 311 0 0 552 1 Alteromonas macleodii species 28108 Alteromonas mediterranea 1 species 314275 585 0 1 Alteromonas addita 287094 species 0 329 841 0 3 2614992 no rank Alteromonas sp. Mac1 1 species 1777491 0 360 0 244 species 1917158 1 Alteromonas sp. RW2A1 0 237 Alteromonas sp. MB-3u-76 1 species 2058133 313 0 1 Alteromonas stellipolaris 233316 species genus 1621534 2 Paraglaciecola 399 4 0 1 species 326544 Paraglaciecola psychrophila 1 395 0 701 0 1 genus 1751872 0 701 1526571 species Lacimicrobium alkaliphilum 1 89404 genus 2 0 510 254 0 species 300231 1 Glaciecola nitratireducens 0 256 1 no rank 2618684 0 256 1 Glaciecola sp. 4H-3-7+YE-5 species 983545 Marinobacter 10 2742 genus 1 0 75 3699 1156 0 83889 no rank 3 0 302 Marinobacter sp. BSs20148 1 species 490759 594 0 1749259 species Marinobacter sp. LQ44 1 species 1671721 1 Marinobacter sp. CP1 0 260 species 2743 Marinobacter hydrocarbonoclasticus 1 799 0 0 282 1874317 species 1 Marinobacter salinus species 1033846 1 Marinobacter adhaerens 357 0 Marinobacter salarius 1 1420917 species 0 552 0 195 Marinobacter psychrophilus 1 species 330734 Marinobacter similis 1 species 1420916 283 0 16 269 1 0 Agarivorans 2 261825 genus Agarivorans gilvus 1 680279 species 0 253 1 0 23 6391 25 Pseudoalteromonadaceae 267888 family 24 Pseudoalteromonas genus 53246 126 6368 1 0 198 0 166935 species 1 Pseudoalteromonas translucida Pseudoalteromonas espejiana 1 species 28107 0 255 183 0 1348114 species 1 Pseudoalteromonas piratica 0 148 Pseudoalteromonas piscicida 1 species 43662 0 1575 5 no rank 194690 1 Pseudoalteromonas sp. SM9913 234831 species 180 0 Pseudoalteromonas sp. NC201 1 1514074 species 0 178 1720343 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 690 0 1761891 species 1 Pseudoalteromonas sp. 13-15 208 0 Pseudoalteromonas sp. Bsw20308 1 species 283699 319 0 714 0 1 Pseudoalteromonas aliena species 247523 species 288 Pseudoalteromonas atlantica 1 417 0 0 231 1 Pseudoalteromonas tunicata species 314281 Pseudoalteromonas spongiae 1 298657 species 0 395 species 28109 Pseudoalteromonas nigrifaciens 1 0 256 0 217 species 267375 1 Pseudoalteromonas marina Pseudoalteromonas phenolica 1 species 161398 303 0 179 0 Pseudoalteromonas luteoviolacea 1 43657 species 1 Pseudoalteromonas agarivorans species 176102 0 126 1 Pseudoalteromonas issachenkonii 152297 species 0 196 301 0 species 43658 Pseudoalteromonas rubra 1 0 131 species 394751 1 Pseudoalteromonas arctica 0 165 species 228 1 Pseudoalteromonas haloplanktis 252 0 43659 species 1 Pseudoalteromonas tetraodonis family 267891 Moritellaceae 2 0 1 179 1 178 0 1 genus 58050 Moritella viscosa 1 species 80854 178 0 546 0 267894 family 3 3 Psychromonas genus 67572 6 546 1 0 no rank 2614957 1 0 224 314282 species Psychromonas sp. CNPT3 1 0 224 357794 species Psychromonas ingrahamii 1 0 316 order 1240482 4 0 660 660 22 0 1 family 1240483 Orbaceae 4 296 0 genus 1335631 1 species 1267021 1 Frischella perrara 0 296 0 1 342 2 1193503 genus Gilliamella 2 340 0 species 1196095 Gilliamella apicola 1 151 12161 1 0 27 Aeromonadales 135624 order 84642 family 26 Aeromonadaceae 0 1 12010 183 Zobellella 2 347533 genus 3 686 1 0 347534 species 1 Zobellella denitrificans 683 0 1 43947 genus 0 625 0 625 1 Tolumonas auensis species 43948 0 435 2 225143 genus 0 196 species 1416627 Oceanisphaera profunda 1 1 Oceanisphaera sp. AMac2203 species 1903694 0 239 Oceanimonas 2 genus 129577 1 0 6 544 0 538 1 no rank 2636315 538 0 511062 species 1 Oceanimonas sp. GK1 Aeromonas 18 642 genus 1 0 1042 9537 0 1074 Aeromonas veronii 1 species 654 293 0 1 Aeromonas dhakensis 196024 species Aeromonas hydrophila 1 644 species 1969 0 species 648 1 Aeromonas caviae 0 188 2828 0 8 257493 no rank Aeromonas sp. ASNIH5 1 species 1758179 341 0 185 0 Aeromonas sp. CA23 1 2033032 species 1636608 species 1 Aeromonas sp. ASNIH3 250 0 species 1636606 Aeromonas sp. ASNIH1 1 0 687 195 0 1636607 species 1 Aeromonas sp. ASNIH2 427 0 species 2033033 Aeromonas sp. CU5 1 499 0 1 Aeromonas sp. ASNIH4 1636609 species 1920107 species Aeromonas sp. ASNIH7 1 0 244 645 species Aeromonas salmonicida 1 565 0 558964 species 1 Aeromonas aquatica 0 449 333 0 1 Aeromonas media 651 species 0 406 Aeromonas schubertii 1 652 species Aeromonas rivipollensis 1 species 948519 0 390 0 1 343 1 order 1934945 Immundisolibacterales 4 3 Immundisolibacteraceae 1934946 family 84 342 1 0 1934947 genus 2 Immundisolibacter 258 6 0 1 species 1810504 Immundisolibacter cernigliae 1 252 0 33811 no rank 2 0 469 224 0 83406 species gamma proteobacterium HdN1 1 0 245 species 1248727 1 endosymbiont of unidentified scaly snail isolate Monju 135623 order 44 Vibrionales 0 1 16281 2 1 0 117 16279 Vibrionaceae 43 641 family 8 1254 1 0 4 Photobacterium 657 genus 38293 species Photobacterium damselae 1 429 0 74109 species 1 Photobacterium profundum 363 0 1295392 species 1 Photobacterium gaetbulicola 454 0 4 Aliivibrio 511678 genus 3 637 1 0 species 40269 Aliivibrio salmonicida 1 244 0 Aliivibrio fischeri 1 species 668 0 197 80852 species 1 Aliivibrio wodanis 193 0 genus 662 Vibrio 30 13690 412 0 1 1 Vibrio cholerae species 666 422 0 223 0 1 species group 1891919 223 0 29498 species 1 Vibrio tubiashii 0 928 species 676 Vibrio fluvialis 1 238 0 Vibrio breoganii 1 species 553239 55601 species Vibrio anguillarum 1 2289 0 399 0 species 28173 Vibrio nigripulchritudo 1 318 0 species 45658 1 Vibrio scophthalmi 579 0 Vibrio coralliilyticus 1 190893 species Vibrio mimicus 1 674 species 0 589 1534743 species 1 Vibrio hyugaensis 84 0 Vibrio tapetis 1 species 52443 0 239 0 311 species 29494 Vibrio furnissii 1 species 212663 1 Vibrio tasmaniensis 174 0 0 307 2614977 no rank 2 2014742 species Vibrio sp. 2521-89 1 0 167 Vibrio sp. EJY3 1 species 1116375 0 140 215 0 species 1435069 Vibrio tritonius 1 1384 0 Vibrio vulnificus 1 species 672 687 species Vibrio gazogenes 1 306 0 10 species group 717610 4063 0 0 465 696485 species 1 Vibrio owensii 0 134 species 190895 1 Vibrio rotiferianus 399 0 Vibrio natriegens 1 species 691 2 species subgroup 2315253 658 0 422 0 species 50719 Vibrio diabolicus 1 1 Vibrio antiquarius 150340 species 236 0 663 species 1 Vibrio alginolyticus 652 0 0 370 species 669 1 Vibrio harveyi 0 760 1 Vibrio parahaemolyticus 670 species 473 0 species 680 Vibrio campbellii 1 152 0 1 Vibrio jasicida species 766224 2025808 species 1 Vibrio qinghaiensis 0 210 1 0 1 266 Paraphotobacterium 2 genus 2042066 Paraphotobacterium marinum 1 species 1755811 265 0 2 Grimontia genus 246861 1 0 1 315 673 species Grimontia hollisae 1 314 0 0 1 704 9 1692040 order Acidiferrobacterales 6 1692041 family Acidiferrobacteraceae 5 695 25 0 1 303 13 0 1 genus 1692042 2 Sulfurifustis species 1675686 Sulfurifustis variabilis 1 0 290 1744881 genus 2 Sulfuricaulis 367 3 0 1 0 364 1620215 species Sulfuricaulis limicola 1 1 0 6 5493 33 Thiotrichales order 72273 135617 family 5 Thiotrichaceae 601 2 0 1 1 0 3 410 Beggiatoa 2 genus 1021 288004 species Beggiatoa leptomitoformis 1 407 0 189 5 0 1 40751 genus 2 Thioploca 0 184 1 Thioploca ingrica 40754 species family 34064 13 2912 0 1869285 genus 1 281 0 1 Allofrancisella guangzhouensis 594679 species 281 0 1 0 14 2631 Francisella 12 genus 262 1 Francisella tularensis species 263 0 409 2 no rank 2610885 334 0 146 0 1 Francisella sp. MA067296 species 475375 0 188 1547445 species 1 Francisella sp. FSC1006 573570 species 1 Francisella sp. TX077310 0 200 species 622488 1 Francisella hispaniensis 0 140 species 573569 1 Francisella sp. TX077308 0 170 28110 species Francisella philomiragia 1 531 0 174 0 954 species 1 Francisella persica 1 Francisella halioticida 549298 species 0 150 657445 species Francisella noatunensis 1 211 0 1 Francisella sp. CA97-1460 1542390 species 298 0 1974 54 0 1 135616 family Piscirickettsiaceae 14 200 3 0 1 28884 genus 2 Hydrogenovibrio 197 0 species 39765 1 Hydrogenovibrio crunogenus 0 182 1 genus 1237 182 0 species 1238 Piscirickettsia salmonis 1 1 0 1 382 Methylophaga 3 40222 genus Methylophaga frappieri 1 754477 species 116 0 species 754476 1 Methylophaga nitratireducenticrescens 265 0 4 Cycloclasticus genus 34067 4 929 1 0 0 375 Cycloclasticus zancles 1 species 1329899 2 no rank 2621467 550 0 208 0 1 Cycloclasticus sp. P1 species 385025 0 342 1 Cycloclasticus sp. PY97N species 728003 3 Thiomicrospira 933 genus 4 227 1 0 0 105 1 Thiomicrospira cyclica 147268 species 1 Thiomicrospira aerophila 92245 species 0 118 2 order 135615 203 0 2 family 868 0 203 2 Dichelobacter 869 genus 1 0 30 203 870 species Dichelobacter nodosus 1 0 173 0 1 3374 12 135618 order Methylococcales 10 142 3362 1 0 9 Methylococcaceae family 403 genus 39773 1 434 0 0 434 species 271065 1 Methylomicrobium alcaliphilum genus 413 1 0 269 1 Methylococcus capsulatus 414 species 0 269 374 0 genus 762296 1 species 1704499 Methylovulum psychrotolerans 1 0 374 0 1 2143 15 genus 416 Methylomonas 5 1 2608980 no rank 0 440 0 440 species 1727196 Methylomonas sp. DH-1 1 0 587 1 Methylomonas methanica species 421 0 343 Methylomonas koyamae 1 702114 species 0 758 1 Methylomonas denitrificans species 1538553 11 no rank 118884 0 2092 1 0 3 456 Thiolapillus 2 genus 1608298 453 0 1076588 species 1 Thiolapillus brandeum 0 248 clade 198346 1 0 248 Candidatus Baumannia cicadellinicola 1 species 186490 genus 349742 Sedimenticola 2 0 1 442 2 0 440 1543721 species Sedimenticola thiotaurini 1 1 genus 1524249 0 425 species 1249552 1 Pseudohongiella spirulinae 0 425 205 0 2 655184 genus 67 0 species 1427364 Candidatus Thioglobus singularis 1 0 138 Candidatus Thioglobus autotrophicus 1 1705394 species 3 clade 32036 0 316 0 144 1 genus 1541743 0 144 species 386487 Candidatus Ruthia magnifica 1 1 Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 species 90 0 species 410330 Calyptogena okutanii thioautotrophic gill symbiont 1 82 0 Oceanospirillales 67 135619 order 1 0 177 14314 Oleiphilaceae 3 family 191033 1 0 1 459 141450 genus Oleiphilus 2 0 1 458 3 455 0 species 141451 Oleiphilus messinensis 1 1 530 1 0 3 Hahellaceae 224379 family 2 Hahella genus 158481 1 0 25 529 158327 species 1 Hahella chejuensis 504 0 6 Kangiellaceae family 1920240 1 0 1 817 5 Kangiella 261963 genus 17 816 1 0 268 0 261964 species Kangiella koreensis 1 Kangiella sediminilitoris 1 species 1144748 0 165 species 1561924 Kangiella profundi 1 0 247 119 0 1 Kangiella geojedonensis 914150 species 28256 family 30 Halomonadaceae 0 1 6536 184 212 2 0 1 376488 genus Halotalea 2 210 0 376489 species 1 Halotalea alkalilenta 4377 143 0 1 genus 2745 Halomonas 15 1 Halomonas campaniensis species 213554 97 0 2609666 no rank 8 0 2284 1 Halomonas sp. R57-5 species 1610576 343 0 1 Halomonas sp. GT species 1971364 0 133 1504981 species 1 Halomonas sp. KO116 300 0 0 289 1118153 species 1 Halomonas sp. GFAJ-1 0 378 Halomonas sp. SF2003 1 species 2136172 292 0 1962264 species 1 Halomonas sp. 'Soap Lake #7' 1 Halomonas sp. 'Soap Lake #6' species 1949203 292 0 257 0 Halomonas sp. 1513 1 species 1883416 Halomonas chromatireducens 1 species 507626 0 318 Halomonas huangheensis 1 1178482 species 349 0 species 475662 1 Halomonas beimenensis 0 265 0 542 115561 species 1 Halomonas hydrothermalis 1897729 species 1 Halomonas aestuarii 379 0 0 1 228 4 genus 42054 Chromohalobacter 2 0 224 1 Chromohalobacter salexigens 158080 species Salinicola 2 genus 404432 1 339 1 0 Salinicola tamaricis 1 species 1771309 0 338 2 Cobetia genus 204286 15 424 1 0 0 409 1 Cobetia marina 28258 species 3 Kushneria genus 504090 1 0 11 700 1 Kushneria marisflavi species 157779 415 0 274 0 Kushneria konosiri 1 698828 species 72 0 3 no rank 114403 genus 235572 1 0 30 1 Candidatus Portiera aleyrodidarum species 91844 30 0 genus 1495768 1 32 0 Candidatus Evansia muelleri 1 species 1495769 0 32 1 114185 genus 0 10 114186 species 1 Candidatus Carsonella ruddii 10 0 5 Saccharospirillaceae 255527 family 1 907 1 0 genus 1445504 Gynuella 2 0 1 723 5 1 Gynuella sunshinyii 1445505 species 0 718 183 1 0 1 genus 230494 2 Reinekea species 1336806 Reinekea forsetii 1 0 182 0 1 2283 24 224372 family 9 Alcanivoracaceae 1 0 47 1971 6 Alcanivorax 59753 genus 230 0 Alcanivorax borkumensis 1 species 59754 Alcanivorax pacificus 1 species 1306787 359 0 229 0 no rank 2638842 1 1113728 species Alcanivorax sp. NBRC 101098 1 229 0 1 Alcanivorax xenomutans species 1094342 0 507 Alcanivorax dieselolei 1 species 285091 599 0 288 3 0 1 2025617 genus 2 Ketobacter 1917421 species 1 Ketobacter alkanivorans 285 0 0 1 2605 48 135620 family 10 Oceanospirillaceae genus 48075 Marinobacterium 2 608 5 0 1 1 Marinobacterium aestuarii species 1821621 0 603 genus 1537406 1 0 321 0 321 1 Bacterioplanes sanyensis species 1249553 187492 genus 1 525 0 0 525 1 Thalassolituus oleivorans 187493 species 205 0 1 genus 188907 1 Oleispira antarctica 188908 species 0 205 1 0 1 898 4 Marinomonas 28253 genus 196814 no rank 1 325 0 325 0 species 400668 Marinomonas sp. MWYL1 1 1 Marinomonas mediterranea species 119864 0 291 species 936476 Marinomonas posidonica 1 281 0 0 247 1775403 order 1 1 2689614 family 0 247 247 0 469322 genus 1 species 465721 1 Steroidobacter denitrificans 0 247 1 0 36 3341 20 Legionellales order 118969 1 0 86 383 4 Coxiellaceae family 118968 134284 no rank 1 0 56 0 56 1 Coxiella-like endosymbiont species 1592897 241 0 776 genus 2 1 Coxiella burnetii 777 species 189 0 52 0 1 no rank 2676648 species 325775 1 Coxiella endosymbiont of Amblyomma americanum 52 0 15 Legionellaceae 444 family 5 2922 1 0 1 95 1 0 Tatlockia 2 465 genus 0 94 1 Tatlockia micdadei 451 species 1 0 8 2822 Legionella 12 genus 445 176 0 species 66969 1 Legionella waltersii 215 0 1 Legionella fallonii 96230 species 449 species 1 Legionella hackeliae 0 129 1 Legionella oakridgensis species 29423 0 162 0 218 450 species 1 Legionella longbeachae species 28087 Legionella sainthelensi 1 0 160 1 Legionella pneumophila species 446 0 1123 82 0 species 45067 1 Legionella lansingensis 235 0 1 Legionella clemsonensis 1867846 species 1 Legionella spiritensis 452 species 288 0 2005262 species 1 Legionella endosymbiont of Polyplax serrata 0 26 25 Cellvibrionales 1706369 order 1 0 7 6326 10 Cellvibrionaceae 1706371 family 1 0 3 3544 343 0 genus 316625 1 Saccharophagus degradans 1 86304 species 343 0 2425 genus 1 0 371 2426 species Teredinibacter turnerae 1 371 0 1 genus 2036021 0 410 410 0 1 Agarilytica rhodophyticola 1737490 species Simiduia 2 genus 447467 1 0 42 524 0 482 1 Simiduia agarivorans species 447471 genus 10 4 Cellvibrio 0 1 1893 2 0 1070 2 2624793 no rank species 1987723 Cellvibrio sp. PSBB006 1 0 720 1 Cellvibrio sp. PSBB023 1945512 species 350 0 821 0 species 155077 1 Cellvibrio japonicus 0 1 879 2 1706372 family Halieaceae 4 1217416 genus Halioglobus 3 877 7 0 1 351 0 930805 species 1 Halioglobus japonicus species 930806 1 Halioglobus pacificus 519 0 5 Microbulbiferaceae family 1706373 1 0 5 1263 4 Microbulbifer genus 48073 7 1258 1 0 284 0 1 Microbulbifer thermotolerans species 252514 1 Microbulbifer aggregans species 1769779 529 0 438 0 species 260552 Microbulbifer agarilyticus 1 1706375 family 5 Spongiibacteraceae 633 4 0 1 1 genus 1084558 260 0 Oceanicoccus sagamiensis 1 species 716816 260 0 1434050 genus Zhongshania 2 242 2 0 1 240 0 species 1470434 Zhongshania aliphaticivorans 1 0 127 genus 630749 1 127 0 1 2631504 no rank 1 Spongiibacter sp. IMCC21906 species 1620392 0 127 135625 order Pasteurellales 30 28777 26 0 1 0 1 28751 2029 family 712 Pasteurellaceae 29 2 Histophilus 214906 genus 1 0 1 329 Histophilus somni 1 731 species 0 328 1641 5 0 1 genus 713 5 Actinobacillus species 716 Actinobacillus suis 1 0 376 344 0 species 718 1 Actinobacillus equuli species 715 1 Actinobacillus pleuropneumoniae 528 0 0 388 67854 species Actinobacillus succinogenes 1 292 0 1 genus 155493 292 0 Gallibacterium anatis 1 750 species 416916 genus 3 Aggregatibacter 1486 32 0 1 Aggregatibacter actinomycetemcomitans 1 species 714 0 612 0 842 1 Aggregatibacter aphrophilus 732 species genus 75984 Mannheimia 4 839 5 0 1 Mannheimia haemolytica 1 75985 species 0 280 0 226 2645054 no rank 1 1432056 species 1 Mannheimia sp. USDA-ARS-USMARC-1261 0 226 85404 species Mannheimia varigena 1 328 0 1 0 1 1186 Pasteurella 3 745 genus 1 Pasteurella multocida species 747 979 0 0 206 754 species 1 Pasteurella dagmatis 6 Haemophilus 724 genus 5 17664 1 0 729 species Haemophilus parainfluenzae 1 0 13913 1 no rank 2609962 512 0 512 0 1 Haemophilus sp. oral taxon 036 species 712310 0 1031 1 Haemophilus pittmaniae 249188 species Haemophilus influenzae 1 species 727 1740 0 0 463 species 730 [Haemophilus] ducreyi 1 2576 0 476528 genus 1 47735 species 1 Bibersteinia trehalosi 2576 0 363 0 1 697331 genus species 157673 1 [Mannheimia] succiniciproducens 0 363 1 0 2 346 2 Glaesserella 2094023 genus 0 344 Glaesserella parasuis 1 species 738 1 0 122 17511 Xanthomonadales 54 order 135614 156 14149 1 0 39 Xanthomonadaceae 32033 family 393 2 0 1 genus 2370 2 Xylella 2371 species Xylella fastidiosa 1 391 0 Pseudoxanthomonas 3 genus 83618 1 0 12 822 1 Pseudoxanthomonas spadix species 415229 0 204 0 606 314722 species Pseudoxanthomonas suwonensis 1 83614 genus 2 Luteimonas 0 1 214 3 Luteimonas sp. 100111 1 species 2006110 211 0 174 4684 1 0 Stenotrophomonas 9 40323 genus 1 Stenotrophomonas rhizophila 216778 species 0 321 1 Stenotrophomonas acidaminiphila species 128780 0 400 0 2172 995085 species group 1 species 40324 Stenotrophomonas maltophilia 1 0 2172 4 196198 no rank 1275 0 0 298 species 2005046 Stenotrophomonas sp. WZN-1 1 0 249 Stenotrophomonas sp. LM091 1 species 1904944 species 1827305 1 Stenotrophomonas sp. MYb57 0 347 Stenotrophomonas sp. KCTC 12332 1 1793721 species 0 381 species 83617 1 Stenotrophomonas nitritireducens 0 342 Xanthomonas 17 338 genus 1 0 435 6549 274 0 Xanthomonas fragariae 1 species 48664 species 366650 Xanthomonas alfalfae 1 183 0 1263 0 2 643453 species group 368 0 Xanthomonas fuscans 1 366648 species 0 895 Xanthomonas citri 1 346 species 56454 species 1 Xanthomonas hortorum 422 0 0 234 species 53413 1 Xanthomonas axonopodis 0 325 species 442694 Xanthomonas perforans 1 0 990 339 species Xanthomonas campestris 1 species 29447 Xanthomonas albilineans 1 0 181 0 207 Xanthomonas euvesicatoria 1 species 456327 530 0 1 Xanthomonas oryzae 347 species 498 0 species 343 1 Xanthomonas translucens Xanthomonas vasicola 1 56459 species 0 174 268 0 1 Xanthomonas vesicatoria species 56460 258 0 1985254 species Xanthomonas phaseoli 1 307 0 species 56458 1 Xanthomonas sacchari 1331 14 0 1 68 genus Lysobacter 5 species 69 Lysobacter enzymogenes 1 207 0 1 Lysobacter antibioticus species 84531 359 0 0 375 species 435897 1 Lysobacter capsici 0 376 262324 species 1 Lysobacter gummosus 3240 197 0 1 1775411 family Rhodanobacteraceae 14 genus 70411 Frateuria 2 420 19 0 1 species 81475 1 Frateuria aurantia 401 0 1 0 9 1375 Dyella 4 231454 genus 1 Dyella thiooxydans 445710 species 383 0 547 0 species 231455 Dyella japonica 1 1 Dyella jiangningensis 1379159 species 436 0 383 9 0 1 75309 genus Rhodanobacter 2 374 0 Rhodanobacter denitrificans 1 666685 species 6 293 1 0 2 Luteibacter genus 242605 Luteibacter rhizovicinus 1 242606 species 0 287 genus 323413 2 Dokdonella 366 18 0 1 1 Dokdonella koreensis 323415 species 0 348 206 0 1 genus 2233801 1 Xanthomonadales bacterium D13 species 2021234 0 206 0 1 68530 448 order 72274 128 Pseudomonadales 135621 family 85 Pseudomonadaceae 55702 507 0 1 286 genus Pseudomonas 80 53917 2083 0 1 0 7192 136849 species group 8 424 0 species 36746 1 Pseudomonas cichorii no rank 2775504 1 388 0 388 0 Pseudomonas sp. Lz4W 1 species 1206777 Pseudomonas syringae group genomosp. 3 1 species 251701 866 0 1 Pseudomonas avellanae species 46257 0 498 1325 0 2 251698 species subgroup 47877 species Pseudomonas amygdali 1 657 0 0 668 29438 species Pseudomonas savastanoi 1 0 522 1 Pseudomonas viridiflava 33069 species 3169 0 species subgroup 251695 1 1 Pseudomonas syringae species 317 0 3169 30 196821 no rank 0 11377 species 1415630 Pseudomonas sp. TKP 1 486 0 species 2083055 Pseudomonas sp. LH1G9 1 0 327 2083054 species Pseudomonas sp. LG1D9 1 316 0 287 0 1 Pseudomonas sp. SWI44 species 2083053 species 1028989 1 Pseudomonas sp. StFLB209 340 0 species 1931241 Pseudomonas sp. S-6-2 1 0 511 1 Pseudomonas sp. CCOS 191 1649877 species 416 0 0 256 1 Pseudomonas sp. SWI6 2083051 species 443 0 1 Pseudomonas sp. FDAARGOS_380 species 2018067 440 0 Pseudomonas sp. St29 1 species 1500687 Pseudomonas sp. TCU-HL1 1 species 1856685 0 316 0 284 species 1636610 1 Pseudomonas sp. PONIH3 species 1500686 1 Pseudomonas sp. Os17 0 452 0 453 Pseudomonas sp. NC02 1 2067572 species 1 Pseudomonas sp. GR 6-02 1659194 species 0 222 2083052 species Pseudomonas sp. SWI36 1 0 421 species 1898684 1 Pseudomonas sp. LPH1 0 433 1611770 species Pseudomonas sp. MRSN12121 1 401 0 Pseudomonas sp. XWY-1 1 species 2069256 480 0 Pseudomonas sp. DR 5-09 1 1534110 species 0 465 1 Pseudomonas sp. HLS-6 species 2049589 0 197 species 1283291 Pseudomonas sp. URMO17WK12:I11 1 530 0 1981174 species Pseudomonas sp. M30-35 1 0 331 426 0 1 Pseudomonas sp. ATCC 13867 1294143 species 1259844 species 1 Pseudomonas sp. FGI182 435 0 species 1930532 1 Pseudomonas sp. CC6-YY-74 281 0 1 Pseudomonas sp. VLB120 69328 species 401 0 0 287 Pseudomonas sp. UW4 1 species 1207075 0 383 1 Pseudomonas sp. MYb193 1827300 species Pseudomonas sp. JY-Q 1 species 1338689 357 0 0 358 Pseudomonas knackmussii 1 species 65741 1 Pseudomonas versuta 1788301 species 0 337 216142 species 1 Pseudomonas rhizosphaerae 244 0 0 3006 2 136846 species group species 74829 1 Pseudomonas balearica 0 273 2733 0 578833 species subgroup 1 316 species Pseudomonas stutzeri 1 0 2733 species 237609 Pseudomonas alkylphenolica 1 0 283 6 136841 species group 6126 0 0 2234 species 287 1 Pseudomonas aeruginosa species 43263 Pseudomonas alcaligenes 1 0 358 422 0 species subgroup 1232139 1 0 422 1149133 species Pseudomonas furukawaii 1 0 1913 species 300 Pseudomonas mendocina 1 species 53412 1 Pseudomonas resinovorans 0 601 0 598 Pseudomonas citronellolis 1 species 53408 104087 species Pseudomonas frederiksbergensis 1 0 663 0 373 Pseudomonas lurida 1 species 244566 Pseudomonas parafulva 1 species 157782 623 0 0 7803 136843 species group 9 293 0 76761 species Pseudomonas veronii 1 588 0 1 Pseudomonas protegens 380021 species 0 328 Pseudomonas corrugata 1 species 47879 species 75612 Pseudomonas mandelii 1 0 333 4749 0 1 Pseudomonas fluorescens 294 species 200451 species Pseudomonas poae 1 0 254 620 0 Pseudomonas azotoformans 1 species 47878 76758 species Pseudomonas orientalis 1 239 0 species 200450 Pseudomonas trivialis 1 399 0 0 7179 species group 136845 6 1 Pseudomonas monteilii 76759 species 0 751 0 4461 303 species Pseudomonas putida 1 0 625 78327 species 1 Pseudomonas mosselii 393 0 Pseudomonas oryzihabitans 1 47885 species 0 505 1 Pseudomonas fulva 47880 species 0 444 70775 species 1 Pseudomonas plecoglossicida 0 2327 species group 136842 2 1640 0 587753 species 1 Pseudomonas chlororaphis species 296 1 Pseudomonas fragi 687 0 0 405 1 Pseudomonas alcaliphila species 101564 0 422 219572 species 1 Pseudomonas antarctica 197 0 1 Pseudomonas entomophila species 312306 1 Pseudomonas koreensis species 198620 562 0 518 0 Pseudomonas psychrotolerans 1 237610 species 209 0 Pseudomonas cremoricolorata 1 species 157783 Pseudomonas brassicacearum 1 930166 species 0 817 species 1583341 1 Pseudomonas cerasi 341 0 0 472 Pseudomonas silesiensis 1 1853130 species 3 351 subfamily 1038 0 352 genus 3 Azotobacter 0 1 1038 41 615 0 Azotobacter chroococcum 1 353 species Azotobacter vinelandii 1 354 species 0 382 0 240 genus 1849530 1 0 240 species 1697053 1 Oblitimonas alkaliphila family 468 Moraxellaceae 42 12380 25 0 1 genus 497 11 Psychrobacter 2181 23 0 1 334543 species 1 Psychrobacter arcticus 0 273 1 Psychrobacter alimentarius species 261164 237 0 1 Psychrobacter cryohalolentis 330922 species 154 0 no rank 196806 6 1341 0 1699622 species Psychrobacter sp. P2G3 1 0 235 209 0 species 1720344 Psychrobacter sp. AntiMn-1 1 116 0 1 Psychrobacter sp. PRwf-1 species 349106 Psychrobacter sp. P11G5 1 species 1699624 0 221 255 0 1 Psychrobacter sp. G 571800 species Psychrobacter sp. DAB_AL43B 1 1028416 species 0 305 153 0 1 Psychrobacter urativorans species 45610 Acinetobacter 25 469 genus 1 0 64 8377 0 269 species 1148157 Acinetobacter oleivorans 1 0 1796 7 no rank 196816 species 1758189 1 Acinetobacter sp. ACNIH2 0 190 species 1636603 Acinetobacter sp. ACNIH1 1 0 256 0 290 species 1608473 Acinetobacter sp. NCu2D-2 1 0 155 2079596 species Acinetobacter sp. SWBY1 1 0 296 1 Acinetobacter sp. TTH0-4 species 1646498 1407071 species Acinetobacter sp. TGL-Y2 1 0 354 1808001 species 1 Acinetobacter sp. LoGeW2-3 0 255 0 241 Acinetobacter equi 1 species 1324350 0 263 species 29430 Acinetobacter haemolyticus 1 species 487316 Acinetobacter soli 1 183 0 0 414 species 106648 1 Acinetobacter bereziniae 40214 species 1 Acinetobacter johnsonii 186 0 1789224 species 1 Acinetobacter larvae 148 0 1 202950 species 181 0 strain 62977 1 Acinetobacter sp. ADP1 181 0 0 351 756892 species 1 Acinetobacter indicus Acinetobacter radioresistens 1 40216 species 0 171 species group 909768 5 0 3171 1 Acinetobacter baumannii species 470 0 1428 1785128 species Acinetobacter lactucae 1 209 0 0 820 1 Acinetobacter pittii 48296 species 0 237 species 106654 1 Acinetobacter nosocomialis 471 species 1 Acinetobacter calcoaceticus 0 477 615 0 Acinetobacter schindleri 1 species 108981 Acinetobacter junii 1 40215 species 324 0 1797 1 0 1 475 genus Moraxella 5 235 0 386891 species 1 Moraxella bovoculi Moraxella osloensis 1 34062 species 0 455 960 0 species 480 1 Moraxella catarrhalis 0 146 29433 species 1 Moraxella ovis 433229 685 0 1 order 91347 Enterobacterales 241 700 0 2 no rank 451511 9 700 1 0 Plesiomonas 2 genus 702 1 Plesiomonas shigelloides 703 species 0 691 10512 30 0 1 family 1903410 Pectobacteriaceae 20 3919 152 0 1 genus 204037 6 Dickeya species 204039 1 Dickeya dianthicola 541 0 species 1089444 Dickeya solani 1 0 1020 Dickeya dadantii 1 species 204038 504 0 species 1778540 1 Dickeya fangzhongdai 397 0 204042 species 1 Dickeya zeae 0 1305 1 0 75 4712 Pectobacterium 6 122277 genus Pectobacterium atrosepticum 1 29471 species 0 354 2567 0 554 species Pectobacterium carotovorum 1 680 0 1 Pectobacterium polaris 2042057 species 0 518 species 1905730 Pectobacterium parmentieri 1 518 0 species 55208 Pectobacterium wasabiae 1 1 0 28 1267 Sodalis 5 84565 genus species 1486991 1 Candidatus Sodalis pierantonius 348 0 0 413 species 1239307 1 Sodalis praecaptivus 0 427 1 Sodalis glossinidius species 63612 51 0 species 1929246 1 Sodalis endosymbiont of Henestaris halophilus 1 0 6 584 2 Brenneria 71655 genus 578 0 1109412 species 1 Brenneria goodwinii 39 Yersiniaceae family 1903411 1 0 55 23281 1519 33 0 1 34037 genus 4 Rahnella 2 2635087 no rank 0 1018 Rahnella sp. Y9602 1 species 741091 0 456 562 0 1805933 species 1 Rouxiella sp. ERMR1:05 0 468 1 Rahnella aquatilis species 34038 0 11 1 Rouxiella 1565532 genus 2 546 1 0 2 Gibbsiella genus 929812 929813 species 1 Gibbsiella quercinecans 0 544 8 502 1 0 2 Chania genus 1745211 Chania multitudinisentens 1 species 1639108 494 0 Serratia 16 613 genus 1 0 487 12719 2429 0 species 615 Serratia marcescens 1 436 0 28151 species 1 Serratia proteamaculans 0 5219 8 2647522 no rank species 768493 Serratia sp. AS13 1 0 691 0 586 488142 species 1 Serratia sp. SCBI species 1327989 Serratia sp. FS14 1 0 722 754 0 species 671990 Serratia sp. FGI94 1 104623 species Serratia sp. ATCC 39006 1 615 0 611 0 2033438 species 1 Serratia sp. MYb239 species 1758196 1 Serratia sp. SSNIH1 548 0 1 Serratia sp. AS12 768490 species 692 0 61652 species Serratia rubidaea 1 808 0 species 82996 Serratia plymuthica 1 0 1176 335 0 species 61651 Serratia ficaria 1 Serratia liquefaciens 1 species 614 0 673 0 1156 47917 species 1 Serratia fonticola genus 629 13 Yersinia 0 1 7929 502 284 0 1 Yersinia aleksiciae species 263819 0 211 Yersinia rohdei 1 29485 species 0 422 species 29483 Yersinia aldovae 1 1 Yersinia intermedia species 631 214 0 0 1276 species group 1649845 3 0 494 species 633 Yersinia pseudotuberculosis 1 species 367190 Yersinia similis 1 337 0 1 Yersinia pestis species 632 445 0 species 29486 Yersinia ruckeri 1 398 0 0 1135 species 29484 1 Yersinia frederiksenii 0 2777 630 species 1 Yersinia enterocolitica species 28152 1 Yersinia kristensenii 510 0 no rank 2653513 1 200 0 200 0 1839800 species 1 Yersinia sp. FDAARGOS_228 11240 23 0 1 1903409 family Erwiniaceae 27 genus 82986 Tatumella 2 0 1 282 2 280 0 Tatumella citrea 1 species 53336 1105 0 genus 2100764 2 593 0 species 665914 Pantoea gaviniae 1 512 0 665913 species Pantoea calida 1 1 genus 51228 111 0 111 0 1 Wigglesworthia glossinidia species 51229 427 5940 1 0 Pantoea 11 genus 53335 473 0 Pantoea stewartii 1 species 66269 919 0 Pantoea vagans 1 species 470934 637 0 Pantoea alhagi 1 species 1891675 Pantoea rwandensis 1 species 1076550 0 256 0 1646 3 2630326 no rank Pantoea sp. At-9b 1 592316 species 0 672 412 0 1 Pantoea sp. PSNIH1 1484158 species 562 0 Pantoea sp. PSNIH2 1 species 1484157 1654067 species group 1 840 0 549 species Pantoea agglomerans 1 0 840 613 0 1 Pantoea ananatis 553 species 129 0 species 1235990 Candidatus Pantoea carbekii 1 0 1 2928 97 551 genus 8 Erwinia 0 534 1619313 species 1 Erwinia gerundensis 1 Erwinia billingiae species 182337 686 0 2622719 no rank 1 0 356 215689 species 1 Erwinia sp. Ejp617 0 356 Erwinia amylovora 1 species 552 340 0 465 0 species 79967 1 Erwinia pyrifoliae 0 63 Candidatus Erwinia sp. ErCipseudotaxifoliae 1 species 1922217 0 387 Erwinia tasmaniensis 1 species 338565 32199 genus 2 Buchnera 851 4 0 1 species 9 1 Buchnera aphidicola 847 0 1903416 family 3 Budviciaceae 0 1 417 1 2 Pragia genus 82984 1 0 6 416 410 0 Pragia fontium 1 82985 species 0 1 9432 18 family 1903414 21 Morganellaceae 1 0 357 2431 3 Proteus genus 583 Proteus mirabilis 1 species 584 1641 0 0 433 585 species Proteus vulgaris 1 1243 206 0 1 genus 581 Morganella 2 species 582 Morganella morganii 1 0 1037 4 Providencia genus 586 1 0 4 2469 Providencia stuartii 1 species 588 408 0 0 432 126385 species 1 Providencia alcalifaciens species 587 Providencia rettgeri 1 1625 0 4 Photorhabdus 29487 genus 11 1147 1 0 29488 species 1 Photorhabdus luminescens 373 0 0 417 1 Photorhabdus asymbiotica 291112 species 0 346 574560 species Photorhabdus temperata 1 58 2085 1 0 6 Xenorhabdus 626 genus 469 0 351671 species 1 Xenorhabdus doucetiae 459 0 species 40576 1 Xenorhabdus bovienii species 628 1 Xenorhabdus nematophila 422 0 1 Xenorhabdus poinarii species 40577 416 0 261 0 351679 species Xenorhabdus hominickii 1 0 39 637 genus 1 634113 species 1 Arsenophonus symbiont of Lipoptena fortisetosa 0 39 114 Enterobacteriaceae 543 family 1 0 1849 263651 1111 49630 1 0 14 Citrobacter genus 544 species group 1344959 7 0 42077 2077148 species 1 Citrobacter freundii complex sp. CFNIH4 1344 0 1 Citrobacter freundii complex sp. CFNIH3 species 2077147 0 941 0 2996 Citrobacter braakii 1 species 57706 461 0 species 2066049 Citrobacter freundii complex sp. CFNIH2 1 Citrobacter werkmanii 1 species 67827 0 1148 0 23854 1 Citrobacter freundii 546 species 11333 0 Citrobacter freundii complex sp. CFNIH9 1 species 2077149 1 Citrobacter farmeri 67824 species 0 526 1510 0 2 2644389 no rank 1 Citrobacter sp. FDAARGOS_156 1702170 species 0 527 species 1920110 Citrobacter sp. CFNIH10 1 0 983 772 0 Citrobacter rodentium 1 67825 species 0 2088 Citrobacter amalonaticus 1 35703 species species 545 Citrobacter koseri 1 1546 0 1 0 29 19223 3 Salmonella 590 genus 0 18614 Salmonella enterica 1 28901 species 1 Salmonella bongori species 54736 0 580 5 no rank 36866 0 2573 0 483 Enterobacteriaceae bacterium ENNIH2 1 species 1920109 891974 species 1 Plautia stali symbiont 330 0 1 Enterobacteriaceae bacterium ENNIH1 2066051 species 0 610 Enterobacteriaceae bacterium ENNIH3 1 species 1920128 0 592 558 0 Enterobacteriaceae bacterium strain FGI 57 1 693444 species 0 1 20364 1138 620 genus Shigella 4 Shigella flexneri 1 species 623 0 4250 0 6954 622 species 1 Shigella dysenteriae 0 8022 no rank 2629414 1 8022 0 Shigella sp. PAMC 28760 1 species 1813821 1 0 23 4221 3 Raoultella genus 160674 species 54291 1 Raoultella ornithinolytica 0 3169 species 575 1 Raoultella planticola 0 1029 1 0 19 1724 Cedecea 2 158483 genus 1 Cedecea neteri species 158822 0 1705 1 579 genus 0 419 419 0 1 Kluyvera intermedia 61648 species 2360 13 0 1 genus 1330547 5 Kosakonia species 1158459 Kosakonia sacchari 1 496 0 208223 species Kosakonia cowanii 1 786 0 Kosakonia radicincitans 1 283686 species 0 581 497725 species Kosakonia oryzae 1 484 0 1 401618 genus 91 0 0 91 1 Candidatus Riesia pediculicola species 401619 561 genus 5 Escherichia 0 1 108627 917 208962 species Escherichia albertii 1 0 7419 1521 0 1 Escherichia marmotae species 1499973 0 95525 species 562 1 Escherichia coli Escherichia fergusonii 1 564 species 3245 0 18405 1438 0 1 genus 547 22 Enterobacter 9 no rank 2608935 0 4392 414 0 1 Enterobacter sp. 638 399742 species Enterobacter sp. Crenshaw 1 1977566 species 0 210 1692238 species 1 Enterobacter sp. FY-07 1125 0 species 2051905 1 Enterobacter sp. CRENT-193 594 0 Enterobacter sp. SA187 1 1914861 species 0 841 0 171 species 1868135 Enterobacter sp. HK169 1 321 0 1 Enterobacter sp. ODB01 species 1827481 species 1560339 1 Enterobacter sp. E20 0 182 534 0 species 1166130 1 Enterobacter sp. R4-368 species group 354276 12 12575 0 1 0 1424 3039 3 Enterobacter hormaechei 158836 species 0 473 subspecies 1296536 Enterobacter xiangfangensis 1 1142 0 1 Enterobacter cloacae complex 'Hoffmann cluster III' 1812934 subspecies 365 0 208224 species Enterobacter kobei 1 Enterobacter cloacae 1 550 species 5143 0 1812935 species 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 563 0 0 486 species 299767 1 Enterobacter ludwigii 0 330 69218 species 1 Enterobacter cancerogenus no rank 2757714 3 1647 0 species 1915310 1 Enterobacter cloacae complex sp. ECNIH7 843 0 species 2027919 1 Enterobacter cloacae complex bacterium 239 0 565 0 1 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 2077137 species 1 Enterobacter asburiae species 61645 0 1002 45 0 genus 409304 1 0 45 1 Candidatus Ishikawaella capsulata species 168169 0 1 1330 29 genus 83654 4 Leclercia 0 920 2627398 no rank 2 species 1920116 Leclercia sp. LSNIH3 1 0 407 1920114 species 1 Leclercia sp. LSNIH1 0 513 Leclercia adecarboxylata 1 83655 species 381 0 1 0 8 1742 3 Pluralibacter genus 1330546 917 0 species 61647 1 Pluralibacter gergoviae 1334193 species [Enterobacter] lignolyticus 1 817 0 1 1048757 genus 0 28 28 0 species 1048758 1 Candidatus Moranella endobia genus 570 10 Klebsiella 0 1 23512 785 0 12991 573 species 1 Klebsiella pneumoniae 2 2608929 no rank 0 1314 Klebsiella sp. LTGPAF-6F 1 species 1905288 614 0 Klebsiella sp. M5al 1 species 1934254 700 0 1 Klebsiella variicola 244366 species 0 1676 species 1134687 Klebsiella michiganensis 1 0 1379 species 2026240 Klebsiella quasivariicola 1 0 672 1308 0 species 548 1 Klebsiella aerogenes Klebsiella quasipneumoniae 1 1463165 species 0 696 2691 0 571 species Klebsiella oxytoca 1 413496 genus Cronobacter 8 0 1 3781 90 0 363 Cronobacter malonaticus 1 species 413503 357 0 species 1163710 1 Cronobacter condimenti species 413497 Cronobacter dublinensis 1 0 398 species 413502 1 Cronobacter turicensis 459 0 species 535744 Cronobacter universalis 1 573 0 0 453 1 Cronobacter muytjensii 413501 species Cronobacter sakazakii 1 28141 species 1088 0 16 no rank 191675 0 1257 16 clade 84563 0 1257 clade 84564 7 0 670 203804 genus 7 Candidatus Blochmannia 670 10 0 1 0 66 1 Candidatus Blochmannia chromaiodes 251542 species 43 0 251535 species Candidatus Blochmannia vafer 1 species 203907 Candidatus Blochmannia floridanus 1 69 0 0 196 no rank 711328 2 0 42 1505596 species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 species 1505597 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 154 0 286 0 101534 species 1 Candidatus Blochmannia pennsylvanicus 3 146507 clade 230 0 1 secondary endosymbiont of Heteropsylla cubana 134287 species 45 0 species 1199245 secondary endosymbiont of Ctenarytaina eucalypti 1 99 0 1 568987 genus 0 86 Candidatus Hamiltonella defensa 1 species 138072 0 86 1906657 genus 1 0 110 110 0 species 1778262 Candidatus Doolittlea endobia 1 clade 199891 1 0 24 0 24 secondary endosymbiont of Trabutina mannipara 1 1835721 species 0 52 1682492 genus 1 Candidatus Tachikawaea gelatinosa 1 species 1410383 52 0 56 0 1 1906659 genus 0 56 1 Candidatus Hoaglandella endobia species 1778263 0 46 genus 1906660 1 1778264 species 1 Candidatus Mikella endobia 46 0 69 0 genus 1906661 1 0 69 Candidatus Gullanella endobia 1 species 1070130 561 0 1 genus 1335483 0 561 species 563 1 Shimwellia blattae 1330545 genus Lelliottia 4 0 1 1909 6 520 0 species 1907578 1 Lelliottia jeotgali Lelliottia amnigena 1 species 61646 0 857 69220 species 1 Lelliottia nimipressuralis 526 0 1 0 2 113311 14 Hafniaceae 1903412 family 2722 149 0 1 genus 635 8 Edwardsiella 0 588 2 no rank 2676541 311 0 species 1578828 Edwardsiella sp. EA181011 1 1 Edwardsiella sp. LADL05-105 1650654 species 277 0 Edwardsiella piscicida 1 1263550 species 352 0 1 Edwardsiella tarda species 636 619 0 270 0 1 Edwardsiella anguillarum species 1821960 species 67780 Edwardsiella ictaluri 1 353 0 Edwardsiella hoshinae 1 93378 species 391 0 Obesumbacterium 2 82982 genus 1 0 12 77462 77450 0 Obesumbacterium proteus 1 82983 species 3 Hafnia genus 568 46 33125 1 0 2621980 no rank 1 11674 0 1 Hafnia sp. CBA7124 species 1848580 11674 0 569 species Hafnia alvei 1 21405 0 135613 order 46 Chromatiales 0 1 9085 162 0 1 3277 32 family 72276 18 Ectothiorhodospiraceae Alkalilimnicola 2 genus 133193 3 294 1 0 1 Alkalilimnicola ehrlichii 351052 species 0 291 2 405 1 0 Spiribacter 3 genus 1335745 297 0 1 Spiribacter curvatus species 1335757 106 0 1335746 species 1 Spiribacter salinus 2 Acidihalobacter 1765964 genus 3 284 1 0 281 0 160660 species 1 Acidihalobacter prosperus 31 497 1 0 Ectothiorhodospira 2 genus 1051 0 466 2684909 no rank 1 466 0 1442136 species Ectothiorhodospira sp. BSL-9 1 332 18 0 1 genus 85108 2 Halorhodospira 1 Halorhodospira halophila 1053 species 314 0 1433 21 0 1 genus 106633 6 Thioalkalivibrio Thioalkalivibrio paradoxus 1 species 108010 0 213 species 106634 Thioalkalivibrio versutus 1 184 0 0 205 2621013 no rank 1 205 0 species 396595 Thioalkalivibrio sp. K90mix 1 1 Thioalkalivibrio nitratireducens 186931 species 307 0 503 0 Thioalkalivibrio sulfidiphilus 1 1033854 species 644 7 0 1 255526 family 4 Halothiobacillaceae 0 1 637 4 genus 109262 Halothiobacillus 3 176 0 species 927 1 Halothiobacillus neapolitanus 0 457 2636392 no rank 1 0 457 Halothiobacillus sp. LS2 1 1860122 species 0 139 1 1738654 family genus 1738655 1 0 139 species 1548547 1 Woeseia oceani 139 0 636 0 449719 family 1 1 437504 genus 0 636 Granulosicoccus antarcticus 1 437505 species 636 0 Chromatiaceae 16 1046 family 49 3527 1 0 5 287 1 0 Thioflavicoccus 2 genus 156885 282 0 80679 species 1 Thioflavicoccus mobilis 0 1 494 3 genus 13724 2 Thiocystis 491 0 Thiocystis violascens 1 species 73141 1 0 5 404 2 Marichromatium 85076 genus 399 0 37487 species Marichromatium purpuratum 1 511 1 0 1 85072 genus 2 Allochromatium Allochromatium vinosum 1 species 1049 510 0 no rank 82569 1 361 0 species 1978339 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 361 80 0 1 genus 1980513 0 80 1 Candidatus Nitrosoglobus terrae species 1630141 0 564 genus 1227 3 Nitrosococcus watsonii 1 473531 species 187 0 1 Nitrosococcus oceani 1229 species 148 0 133539 species 1 Nitrosococcus halophilus 229 0 genus 53392 Thiodictyon 2 777 5 0 1 1166950 species 1 Candidatus Thiodictyon syntrophicum 772 0 0 449 2 451214 no rank 5 449 1 0 2 Thiohalobacter genus 1273155 species 585455 Thiohalobacter thiocyanaticus 1 444 0 3 Wenzhouxiangellaceae 1676141 family 2 251 1 0 2 Wenzhouxiangella 1676142 genus 1 0 5 249 1579979 species 1 Wenzhouxiangella marina 244 0 28216 class 340 Betaproteobacteria 0 1 121256 637 1 0 34 9119 39 Nitrosomonadales 32003 order family 2008790 2 0 175 0 1 175 19 genus 919 2 Thiobacillus 0 156 36861 species 1 Thiobacillus denitrificans 2187 9 0 1 206379 family 12 Nitrosomonadaceae 35798 genus 4 Nitrosospira 695 2 0 1 1288494 species Nitrosospira lacus 1 0 232 species 35799 Nitrosospira briensis 1 0 225 Nitrosospira multiformis 1 species 1231 0 236 7 Nitrosomonas genus 914 10 1483 1 0 178 0 species 915 1 Nitrosomonas europaea no rank 2609265 2 0 355 Nitrosomonas sp. Is79A3 1 species 261292 0 188 0 167 1 Nitrosomonas sp. AL212 species 153948 221 0 Nitrosomonas eutropha 1 916 species 0 289 44574 species Nitrosomonas communis 1 1 Nitrosomonas ureae 44577 species 430 0 family 90627 Gallionellaceae 5 1007 13 0 1 314343 genus 2 Sideroxydans 660 5 0 1 Sideroxydans lithotrophicus 1 species 63745 655 0 1 0 1 334 2 Gallionella genus 96 333 0 1 Gallionella capsiferriformans 370405 species 5 Sterolibacteriaceae 2008793 family 23 1005 1 0 2 Sulfuritalea 1054211 genus 1 0 3 670 667 0 species 748811 1 Sulfuritalea hydrogenivorans 0 1 312 9 genus 378210 2 Methyloversatilis 2639971 no rank 1 303 0 1842540 species Methyloversatilis sp. RAC08 1 303 0 0 1 3996 18 family 32011 Methylophilaceae 11 2 genus 1679002 2207 0 species 1581680 Candidatus Methylopumilus turicensis 1 0 68 2139 0 species 1581557 Candidatus Methylopumilus planktonicus 1 0 361 genus 16 1 361 0 2630143 no rank 1 361 0 species 1662285 Methylophilus sp. TWE2 1 1 0 13 723 3 Methylovorus genus 81682 266009 species 1 Methylovorus glucosotrophus 0 359 351 0 no rank 2634027 1 0 351 Methylovorus sp. MP688 1 species 887061 2 406 1 0 3 Methylotenera genus 359407 1055487 species Methylotenera versatilis 1 0 159 245 0 359408 species 1 Methylotenera mobilis 0 281 1 404 genus 0 281 1 Methylobacillus flagellatus 405 species 2772226 family 3 715 0 440 0 1778653 genus 1 440 0 2637784 no rank 1 1 Sulfuriferula sp. AH1 species 1985873 0 440 0 1 275 6 935200 genus 2 Sulfuricella 1 Sulfuricella denitrificans species 649841 0 269 0 401 2 no rank 33809 1 Betaproteobacteria bacterium GR16-43 species 1904640 0 270 131 0 543913 species 1 beta proteobacterium CB Burkholderiales 230 80840 order 1 0 1714 91738 1725 0 no rank 80841 2 1463 0 1 Burkholderiales bacterium YL45 1834205 species Burkholderiales bacterium GJ-E10 1 1469502 species 262 0 1 0 350 19313 56 Comamonadaceae 80864 family 19 291 1 0 2 Melaminivora 1649468 genus 272 0 1 2641902 no rank 2109913 species 1 Melaminivora sp. SC2-9 272 0 3151 149 0 1 12916 genus Acidovorax 9 1 Acidovorax ebreus species 721785 400 0 531 0 1 Acidovorax citrulli species 80869 477 0 Acidovorax avenae 1 80867 species Acidovorax sp. NA3 1 553814 species 202 0 2684926 no rank 4 1392 0 188 0 1 Acidovorax sp. T1 1858609 species Acidovorax sp. RAC01 1 species 1842533 501 0 0 318 Acidovorax sp. JS42 1 232721 species 1 Acidovorax sp. KKS102 species 358220 385 0 1 genus 1436289 239 0 239 0 Candidatus Symbiobacter mobilis 1 species 1436290 1 567 1 0 3 Limnohabitans 665874 genus 2 2626134 no rank 566 0 203 0 1678128 species 1 Limnohabitans sp. 63ED37-2 1678129 species 1 Limnohabitans sp. 103DPR2 363 0 2490452 genus 2 468 0 197 0 Comamonadaceae bacterium B1 1 species 1458426 0 271 1 Comamonadaceae bacterium A1 1458425 species 443 0 238749 genus 1 1 Diaphorobacter polyhydroxybutyrativorans 1546149 species 443 0 genus 174951 2 Ramlibacter 508 5 0 1 species 94132 1 Ramlibacter tataouinensis 0 503 241 3 0 1 352450 genus Simplicispira 2 238 0 Simplicispira sp. SC1-8 1 2109915 species 364316 genus 1 0 439 0 439 1 Verminephrobacter eiseniae 364317 species 4 Comamonas 283 genus 1 0 89 2197 225992 species Comamonas kerstersii 1 0 652 species 285 1 Comamonas testosteroni 0 999 Comamonas serinivorans 1 species 1082851 457 0 4 Hydrogenophaga 47420 genus 1 0 44 952 0 708 no rank 2610897 2 1842537 species 1 Hydrogenophaga sp. RAC07 0 315 1 Hydrogenophaga sp. PBC 795665 species 393 0 1763535 species 1 Hydrogenophaga crassostreae 0 200 genus 201096 2 Alicycliphilus 0 1 659 1 0 658 Alicycliphilus denitrificans 1 179636 species 322 0 2678886 genus 1 0 322 1 Melaminivora sp. SC2-7 species 2116657 5 Delftia 80865 genus 1 0 138 2453 1082 0 2 2613839 no rank 0 486 species 1920191 Delftia sp. HK171 1 1 Delftia sp. Cs1-4 species 742013 596 0 732 0 180282 species 1 Delftia tsuruhatensis 0 501 1 Delftia acidovorans 80866 species 2782 37 0 1 34072 genus 5 Variovorax 466 0 436515 species 1 Variovorax boronicumulans no rank 663243 2 863 0 2126319 species Variovorax sp. PMC12 1 560 0 0 303 1795631 species 1 Variovorax sp. PAMC 28711 1416 0 Variovorax paradoxus 1 34073 species 30 1694 1 0 5 Rhodoferax genus 28065 81479 species 1 Rhodoferax antarcticus 0 230 Rhodoferax koreense 1 species 1842727 316 0 192843 species 1 Rhodoferax ferrireducens 519 0 0 599 1 Rhodoferax saidenbachensis species 1484693 3 Polaromonas 52972 genus 81 904 1 0 356 0 no rank 2638319 1 0 356 1 Polaromonas sp. JS666 296591 species 467 0 216465 species Polaromonas naphthalenivorans 1 3 Ottowia 219181 genus 8 653 1 0 0 388 species 2109914 Ottowia sp. KADR8-3 1 257 0 1 2645081 no rank 0 257 species 1658672 Ottowia sp. oral taxon 894 1 Oxalobacteraceae 28 family 75682 1 0 151 14410 85 4692 1 0 Massilia 6 149698 genus 506 0 species 1141883 1 Massilia putida species 2045208 Massilia sp. B2 1 448 0 0 3074 no rank 2609279 2 1678028 species 1 Massilia sp. NR 4-1 0 579 1 Massilia sp. WG5 species 1707785 2495 0 579 0 species 2072590 1 Massilia sp. ZMN-3 570 0 genus 846 1 1 Oxalobacter formigenes species 847 0 570 1991 13 0 1 202907 genus 4 Collimonas 279113 species 1 Collimonas pratensis 0 458 797 0 species 279058 Collimonas arenae 1 0 723 Collimonas fungivorans 1 species 158899 1 0 126 3113 Herbaspirillum 6 genus 963 0 678 Herbaspirillum frisingense 1 92645 species 1 Herbaspirillum rubrisubalbicans 80842 species 659 0 0 518 341045 species Herbaspirillum hiltneri 1 964 species 1 Herbaspirillum seropedicae 0 763 0 369 no rank 2624150 1 Herbaspirillum sp. meg3 1 2025949 species 369 0 3 Herminiimonas genus 303379 3 550 1 0 226 0 species 1809410 Herminiimonas arsenitoxidans 1 0 321 204773 species Herminiimonas arsenicoxydans 1 3343 58 0 1 genus 29580 Janthinobacterium 7 0 545 55508 species 1 Janthinobacterium agaricidamnosum no rank 2610881 4 0 2106 0 672 1938606 species 1 Janthinobacterium sp. LM6 0 348 1236179 species Janthinobacterium sp. B9-8 1 1 Janthinobacterium sp. 1_2014MBL_MicDiv species 1644131 759 0 0 327 species 375286 1 Janthinobacterium sp. Marseille 1 Janthinobacterium svalbardensis 368607 species 0 634 17 224471 no rank 0 4014 433 13 0 1 28067 genus Rubrivivax 2 species 28068 Rubrivivax gelatinosus 1 420 0 0 451 [Polyangium] brachysporum 1 413882 species 32012 genus Thiomonas 2 0 1 425 26 399 0 Thiomonas intermedia 1 species 926 212743 genus Rhizobacter 2 343 10 0 1 1 Rhizobacter gummiphilus 946333 species 0 333 0 1 732 3 88 genus Leptothrix 2 1 Leptothrix cholodnii 34029 species 729 0 2 Paucibacter 318147 genus 1 0 1 316 0 315 1 no rank 2642959 315 0 Paucibacter sp. KCTC 42545 1 species 1768242 genus 65047 Mitsuaria 2 319 20 0 1 299 0 2648776 no rank 1 1 Mitsuaria sp. 7 1658665 species 0 299 646 98 0 1 genus 93681 2 Roseateles 548 0 species 76731 Roseateles depolymerans 1 1 0 2 349 2 Methylibium 316612 genus 105560 species 1 Methylibium petroleiphilum 347 0 17937 105 0 1 506 family 42 Alcaligenaceae 1472344 genus 1 208 0 0 208 1472345 species 1 Basilea psittacipulmonis 803 7 0 1 290425 genus Advenella 3 344 0 species 310575 1 Advenella kashmirensis 0 452 302406 species Advenella mimigardefordensis 1 0 1 5880 194 genus 222 Achromobacter 6 0 949 217203 species 1 Achromobacter spanius species 217204 Achromobacter insolitus 1 0 805 0 458 2626865 no rank 1 species 1758194 Achromobacter sp. AONIH1 1 0 458 85698 species 1 Achromobacter xylosoxidans 2453 0 1 Achromobacter denitrificans species 32002 0 1021 876 13 0 1 507 genus Alcaligenes 2 863 0 511 species Alcaligenes faecalis 1 0 1 528 13 1921582 genus 2 Orrella species 1851544 1 Orrella dioscoreae 515 0 Oligella 2 90243 genus 1 0 1 106 Oligella urethralis 1 species 90245 105 0 2 Castellaniella 359336 genus 16 486 1 0 1 Castellaniella defragrans species 75697 0 470 294 1 0 1 305976 genus Pusillimonas 2 293 0 1 no rank 2640016 293 0 Pusillimonas sp. T7-7 1 species 1007105 2 29574 genus 0 154 75 0 1 Taylorella equigenitalis species 29575 1 Taylorella asinigenitalis species 84590 0 79 1100891 genus 2 Paenalcaligenes 152 3 0 1 1 Paenalcaligenes hominis 643674 species 149 0 17 Bordetella 517 genus 206 8345 1 0 507 0 species 1416806 1 Bordetella genomosp. 8 Bordetella bronchialis 1 463025 species 0 619 520 species 1 Bordetella pertussis 373 0 species 103855 1 Bordetella hinzii 624 0 1 Bordetella genomosp. 13 463040 species 431 0 species 519 Bordetella parapertussis 1 371 0 0 475 463024 species 1 Bordetella genomosp. 6 no rank 2630031 1 558 0 0 558 1697043 species 1 Bordetella sp. H567 species 1331258 1 Bordetella pseudohinzii 0 481 0 373 1 Bordetella flabilis species 463014 698 0 species 94624 1 Bordetella petrii 0 442 species 123899 Bordetella trematum 1 Bordetella bronchiseptica 1 518 species 978 0 0 597 1416803 species 1 Bordetella genomosp. 9 species 521 1 Bordetella avium 364 0 Bordetella holmesii 1 35814 species 248 0 0 1 32625 226 119060 family 84 Burkholderiaceae 32008 genus 41 Burkholderia 0 1 16302 852 2613784 no rank 11 3460 0 256 0 1 Burkholderia sp. YI23 1097668 species 640510 species Burkholderia sp. CCGE1001 1 360 0 283 0 Burkholderia sp. PAMC 26561 1 species 1795043 372 0 species 758796 Burkholderia sp. RPE67 1 1678678 species Burkholderia sp. HB1 1 0 269 416344 species 1 Burkholderia sp. KJ006 0 424 Burkholderia sp. PAMC 28687 1 species 1795874 253 0 0 363 1 Burkholderia sp. Bp7605 species 1740163 1468409 species Burkholderia sp. 2002721687 1 0 221 0 445 Burkholderia sp. CCGE1003 1 640512 species 214 0 species 1740162 1 Burkholderia sp. Bp5365 7 species group 111527 0 2468 0 674 species 28450 Burkholderia pseudomallei 1 548 0 Burkholderia thailandensis 1 species 57975 0 270 1637837 species 1 Burkholderia sp. MSMB0266 313 0 1637841 species Burkholderia sp. MSMB0852 1 1 Burkholderia oklahomensis species 342113 289 0 1 Burkholderia mallei 13373 species 0 220 154 0 1637831 species 1 Burkholderia sp. MSMB617WGS 19 87882 species group 0 8075 Burkholderia pyrrocinia 1 species 60550 0 261 1 Burkholderia diffusa species 488732 0 120 0 347 152480 species Burkholderia ambifaria 1 species 1207504 1 Burkholderia pseudomultivorans 276 0 1 Burkholderia seminalis 488731 species 293 0 Burkholderia ubonensis 1 101571 species 0 740 488729 species Burkholderia metallica 1 219 0 1 Burkholderia vietnamiensis 60552 species 597 0 507 0 Burkholderia stabilis 1 species 95485 species 1503054 1 Burkholderia stagnalis 0 225 0 1399 1 Burkholderia cenocepacia species 95486 209 0 species 1503055 1 Burkholderia territorii 0 215 1 [Pseudomonas] mesoacidophila species 265293 0 192 152500 species 1 Burkholderia dolosa species 482957 Burkholderia lata 1 0 319 229 0 1 Burkholderia contaminans species 488447 Burkholderia cepacia 1 292 species 1269 0 Burkholderia latens 1 species 488446 0 171 87883 species 1 Burkholderia multivorans 0 487 28095 species Burkholderia gladioli 1 515 0 0 538 1 Burkholderia glumae 337 species Burkholderia plantarii 1 species 41899 0 394 1 0 130 4045 9 Cupriavidus genus 106589 106590 species 1 Cupriavidus necator 0 758 1 Cupriavidus pinatubonensis 248026 species 0 456 435 0 68895 species 1 Cupriavidus basilensis no rank 2640874 2 971 0 species 1389192 1 Cupriavidus sp. USMAHM13 0 454 species 876364 1 Cupriavidus sp. USMAA2-4 517 0 Cupriavidus metallidurans 1 species 119219 0 420 Cupriavidus sp. USMAA1020 1 367825 species 0 547 82541 species 1 Cupriavidus gilardii 328 0 3379 77 0 1 93217 genus 10 Pandoraea 1 Pandoraea oxalativorans 573737 species 299 0 93221 species Pandoraea pulmonicola 1 210 0 species 445709 1 Pandoraea thiooxydans 0 318 93222 species 1 Pandoraea sputorum 0 336 324 0 Pandoraea pnomenusa 1 species 93220 0 504 93219 species 1 Pandoraea norimbergensis 656178 species Pandoraea vervacti 1 542 0 1 Pandoraea apista species 93218 497 0 Pandoraea faecigallinarum 1 species 656179 272 0 0 412 genus 1827195 1 Burkholderia sp. RPE64 1 758793 species 412 0 genus 44013 Polynucleobacter 4 0 1 352 1 93 0 1835254 species Polynucleobacter duraquae 1 0 208 1 Polynucleobacter asymbioticus species 576611 0 50 species 576610 Polynucleobacter necessarius 1 85 3007 1 0 5 Ralstonia 48736 genus 0 484 species 105219 1 Ralstonia mannitolilytica 0 611 329 species 1 Ralstonia pickettii 1 Ralstonia solanacearum 305 species 0 1413 190721 species Ralstonia insidiosa 1 414 0 4773 58 0 1 1822464 genus Paraburkholderia 12 0 346 Paraburkholderia xenovorans 1 36873 species 342 0 Paraburkholderia aromaticivorans 1 2026199 species 396 0 1 no rank 2615204 1 Paraburkholderia sp. SOS3 species 1926494 396 0 0 294 148447 species 1 Paraburkholderia phymatum 1 Paraburkholderia hospita 169430 species 654 0 0 385 311230 species Paraburkholderia terrae 1 1 Paraburkholderia phenoliruptrix 252970 species 428 0 Paraburkholderia phytofirmans 1 261302 species 0 394 501 0 Paraburkholderia caribensis 1 species 75105 481 0 Paraburkholderia sprentiae 1 species 948107 494 0 134537 species 1 Paraburkholderia fungorum 0 129 1 2571159 genus Paraburkholderia rhizoxinica 1 species 412963 0 129 119066 no rank 11 0 648 0 32 1 genus 1381133 0 32 species 669502 1 Candidatus Profftella armatura genus 327159 2 Candidatus Accumulibacter 0 1 339 15 324 0 1 Candidatus Accumulibacter phosphatis 327160 species genus 1301080 1 0 10 10 0 1 Candidatus Nasuia deltocephalinicola species 1160784 1 189384 genus 0 3 0 3 1 Candidatus Tremblaya princeps species 189385 6 Kinetoplastibacterium 33055 genus 1 0 2 264 0 50 species 994696 1 Candidatus Kinetoplastibacterium oncopeltii 55 0 994692 species 1 Candidatus Kinetoplastibacterium desouzaii 41 0 Candidatus Kinetoplastibacterium galatii 1 994695 species 1 Candidatus Kinetoplastibacterium crithidii species 33056 0 77 Kinetoplastibacterium blastocrithidii 1 species 233181 39 0 0 1 5869 101 206389 order Rhodocyclales 22 1489 35 0 1 75787 family 6 Rhodocyclaceae 551759 genus Aromatoleum 2 0 1 289 10 0 279 Aromatoleum aromaticum 1 551760 species genus 146937 2 Azospira 670 23 0 1 1 Azospira oryzae species 146939 647 0 495 0 1 no rank 75788 495 0 Rhodocyclaceae bacterium 1 species 1898103 2008795 family Azonexaceae 3 531 5 0 1 526 7 0 1 73029 genus 2 Dechloromonas 0 519 Dechloromonas aromatica 1 259537 species 246 3748 1 0 Zoogloeaceae 12 2008794 family 33057 genus 6 Thauera 0 1 2007 39 0 905 2 2609274 no rank species 2005884 1 Thauera sp. K11 475 0 0 430 species 85643 Thauera sp. MZ1T 1 species 59405 Thauera aromatica 1 0 420 0 363 1 Thauera humireducens species 1134435 0 280 species 96773 1 Thauera chlorobenzoica 12960 genus 5 Azoarcus 0 1 1495 80 2 2629479 no rank 696 0 248 0 198107 species Azoarcus sp. CIB 1 0 448 1 Azoarcus sp. KH32C 748247 species 1 Azoarcus olearius species 418699 341 0 0 378 2067960 species Azoarcus sp. SY39 1 35 Neisseriales 206351 order 1 0 431 12844 57 3498 1 0 Chromobacteriaceae 12 family 1499392 0 1791 4 90153 no rank 535 genus Chromobacterium 4 1791 68 0 1 0 570 species 536 Chromobacterium violaceum 1 Chromobacterium vaccinii 1 species 1108595 734 0 419 0 1 no rank 2641838 0 419 2059672 species Chromobacterium sp. ATCC 53434 1 1 0 2 445 Pseudogulbenkiania 2 genus 568394 1 2642558 no rank 443 0 443 0 1 Pseudogulbenkiania sp. NH8B 748280 species 567 8 0 1 168470 genus 2 Laribacter 559 0 Laribacter hongkongensis 1 168471 species 0 297 genus 187 1 1 no rank 2620219 0 297 0 297 1 Aquaspirillum sp. LM1 species 1938604 2 Jeongeupia 885864 genus 1 0 1 341 1 no rank 2619593 0 340 1 Jeongeupia sp. USM3 species 1906741 0 340 Neisseriaceae 22 481 family 45 8915 1 0 1 0 126 6250 Neisseria 12 482 genus 486 species Neisseria lactamica 1 0 402 1 Neisseria zoodegmatis 326523 species 0 759 0 750 Neisseria sp. 10023 1 1853278 species 0 425 species 28091 Neisseria weaveri 1 species 495 Neisseria elongata 1 294 0 0 477 Neisseria sicca 1 species 490 999 0 species 487 1 Neisseria meningitidis species 488 Neisseria mucosa 1 0 618 485 species 1 Neisseria gonorrhoeae 405 0 0 995 no rank 2623750 2 Neisseria sp. 10022 1 1853276 species 0 355 Neisseria sp. KEM232 1 species 655307 640 0 0 1 1250 43 genus 1193515 Snodgrassella 2 1207 0 species 1196083 1 Snodgrassella alvi Vitreoscilla 3 59 genus 5 695 1 0 244 0 1 no rank 2627922 96942 species 1 Vitreoscilla sp. C1 244 0 Vitreoscilla filiformis 1 species 63 0 446 71 genus 1 0 161 species 72 1 Simonsiella muelleri 161 0 1 no rank 421605 188 0 Neisseriaceae bacterium DSM 100970 1 species 2052837 188 0 Eikenella 2 538 genus 10 326 1 0 Eikenella corrodens 1 species 539 0 316 16 57723 phylum 5532 0 class 204432 14 Acidobacteriia 0 1 5205 4 597 10 0 1 order 332160 3 Solibacterales 1 587 1 0 Solibacteraceae 2 family 332161 0 586 332162 genus 1 Candidatus Solibacter usitatus 1 species 332163 0 586 204433 order Acidobacteriales 10 4604 8 0 1 0 1 4596 8 204434 family 9 Acidobacteriaceae 2 genus 940557 788 0 465 0 species 940614 1 Granulicella mallensis 323 0 1 Granulicella tundricola species 940615 33973 genus 1 0 2458 33075 species Acidobacterium capsulatum 1 2458 0 416 5 0 1 658061 genus 2 Candidatus Koribacter 411 0 species 658062 1 Candidatus Koribacter versatilis 4 926 1 0 3 Terriglobus 392733 genus Terriglobus roseus 1 species 392734 544 0 870903 species 1 Terriglobus saanensis 378 0 0 1 327 2 1562566 class 2 Blastocatellia 0 325 genus 458032 1 1 Chloracidobacterium thermophilum 458033 species 0 325 12154458 0 1626 clade 1783272 0 33298 133 1798711 clade 1117 phylum Cyanobacteria 133 0 1 33298 15 0 10195 subclass 1301283 38 Oscillatoriales 17 1150 order 1 0 12 3586 3 1315 1 0 Microcoleaceae 4 1892252 family genus 44471 1 0 789 0 789 1 no rank 2642155 1 Microcoleus sp. PCC 7113 1173027 species 789 0 1205 genus 2 Trichodesmium 0 1 523 2 species 1206 1 Trichodesmium erythraeum 521 0 family 1892255 Gomontiellaceae 2 0 1 264 32 0 232 241421 genus 1 232 0 Crinalium epipsammum 1 241425 species 1 0 1 1349 6 Oscillatoriaceae family 1892254 1 0 13 467 Moorea 2 1155738 genus 1155739 species 1 Moorea producens 454 0 881 1 0 1 1158 genus Oscillatoria 3 361 0 482564 species Oscillatoria nigro-viridis 1 0 519 118323 species 1 Oscillatoria acuminata 1892249 family Cyanothecaceae 3 0 1 371 12 2 Cyanothece 43988 genus 1 0 4 359 355 0 2649277 no rank 1 Cyanothece sp. PCC 7425 1 species 395961 355 0 275 0 1 1892251 family 63132 genus 1 0 275 2648775 no rank 1 0 275 Geitlerinema sp. PCC 7407 1 species 1173025 275 0 1 0 4 6609 Chroococcales 21 order 1118 1165 2 0 1 family 1890464 7 Chroococcaceae 1 143 1 0 Gloeocapsa 2 genus 102231 1 no rank 2623012 142 0 142 0 1173026 species Gloeocapsa sp. PCC 7428 1 237 0 1 268175 genus 237 0 1 no rank 2648896 species 2005460 1 Chondrocystis sp. NIES-4102 237 0 0 1 783 4 genus 669357 Geminocystis 3 0 779 2625037 no rank 2 species 1617448 Geminocystis sp. NIES-3709 1 0 306 473 0 1 Geminocystis sp. NIES-3708 species 1615909 family 1890452 Cyanobacteriaceae 3 0 1 1966 3 3 1963 1 0 2 Cyanobacterium genus 102234 1960 0 1 Cyanobacterium aponinum 379064 species 708 0 1890449 family 3 708 3 0 1 1125 genus 3 Microcystis 0 513 Microcystis aeruginosa 1 1126 species 1 2643300 no rank 0 192 1967666 species 1 Microcystis sp. MC19 0 192 0 2766 family 1890450 7 0 1179 2 28070 genus 747 0 1 2546356 species 747 0 1 Cyanothece sp. PCC 7424 strain 65393 0 432 species 2546359 1 0 432 Cyanothece sp. PCC 7822 1 strain 497965 200 0 1 genus 263510 0 200 1 2546360 species Cyanothece sp. ATCC 51142 1 43989 strain 200 0 0 143 1453359 genus 1 0 143 1 Candidatus Atelocyanobacterium thalassa species 713887 0 386 1 92682 no rank 386 0 genus 76023 1 0 386 1 2632878 no rank species 65093 Halothece sp. PCC 7418 1 0 386 2 genus 2546365 858 0 species 2546366 2 858 0 362 0 Cyanothece sp. PCC 8802 1 strain 395962 strain 41431 Cyanothece sp. PCC 8801 1 496 0 class 307596 5 Gloeobacteria 0 1 656 1 307595 order 4 Gloeobacterales 0 1 655 12 0 643 family 1890422 3 1 0 5 643 Gloeobacter 3 33071 genus Gloeobacter kilaueensis 1 1416614 species 0 229 Gloeobacter violaceus 1 33072 species 409 0 211 0 2 order 1890505 Chroococcidiopsidaceae 2 1890528 family 1 0 1 211 1 genus 54298 210 0 210 0 Chroococcidiopsis thermalis 1 54299 species 1 0 8 9948 31 Nostocales order 1161 family 2661849 8 2497 0 16 2497 1 0 Calothrix 8 genus 1186 species 32054 Calothrix parietina 1 0 326 6 2619626 no rank 2155 0 427 0 species 2005469 Calothrix sp. NIES-4071 1 species 99598 1 Calothrix sp. PCC 7507 0 322 Calothrix sp. 336/3 1 1337936 species 0 349 380 0 1 Calothrix sp. NIES-2098 species 1954171 2005462 species Calothrix sp. NIES-3974 1 274 0 403 0 2005461 species 1 Calothrix sp. NIES-4101 1162 family 18 Nostocaceae 0 1 6054 3 1 0 8 3935 Nostoc 10 1177 genus 381 0 1 Nostoc punctiforme species 272131 7 no rank 2593658 2894 0 0 289 103690 species 1 Nostoc sp. PCC 7120 170 0 Nostoc sp. CENA543 1 species 1869241 Nostoc sp. PCC 7524 1 species 28072 0 365 species 1751286 1 Nostoc sp. NIES-3756 448 0 species 1618022 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1 380 0 0 205 species 317936 Nostoc sp. PCC 7107 1 1037 0 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 1261031 0 652 1 Nostoc flagelliforme species 1306274 Anabaena 4 genus 1163 1 0 3 1223 species 1165 1 Anabaena cylindrica 0 346 874 0 2 2619674 no rank Anabaena sp. WA102 1 species 1647413 307 0 0 567 46234 species 1 Anabaena sp. 90 3 Trichormus 264688 genus 1 893 1 0 0 441 264691 species Trichormus variabilis 1 0 451 1164 species 1 Trichormus azollae 453 0 1 family 1892263 0 453 1190 genus 1 453 0 494603 no rank 1 453 0 1 Fischerella sp. NIES-3754 species 1752063 Rivulariaceae 2 family 1185 3 553 1 0 550 0 373984 genus 1 550 0 no rank 2676603 1 0 550 Rivularia sp. PCC 7116 1 373994 species 0 383 1219117 no rank 1 0 383 Nostocales cyanobacterium HT-58-2 1 1940762 species Pleurocapsales 5 order 52604 1 1300 1 0 217 0 2 family 1890500 genus 44474 2 Pleurocapsa 0 1 217 1 0 216 1 Pleurocapsa minor 54308 species 2 1890498 family 1082 0 0 1082 genus 102115 2 0 290 2642663 no rank 1 species 1807358 Stanieria sp. NIES-3757 1 0 290 102116 species Stanieria cyanosphaera 1 0 792 86 10845 1 0 50 Synechococcales 1890424 order 0 1 1182 2 1213 family 4 Prochloraceae 1218 genus 3 1180 0 species 1219 Prochlorococcus marinus 1 0 907 273 0 2 no rank 2627481 149 0 1501269 species Prochlorococcus sp. MIT 0801 1 species 1501268 Prochlorococcus sp. MIT 0604 1 0 124 1890436 family 3 Pseudanabaenaceae 175 10 0 1 1 165 1 0 Pseudanabaena 2 1152 genus no rank 2593292 1 164 0 Pseudanabaena sp. PCC 7367 1 82654 species 0 164 0 639 1890428 family 4 0 1 639 71 genus 1142 Synechocystis 4 no rank 2640012 3 568 0 2116702 species Synechocystis sp. IPPAS B-1465 1 0 203 0 203 1148 species Synechocystis sp. PCC 6803 1 0 162 1147 species Synechocystis sp. PCC 6714 1 0 535 1890429 family 1 535 0 genus 155977 1 0 535 155978 species 1 Acaryochloris marina 6905 15 0 1 1890426 family 31 Synechococcaceae 726 0 genus 167375 2 no rank 2627006 1 303 0 0 303 1851505 species 1 Cyanobium sp. NIES-981 0 423 59930 species Cyanobium gracile 1 1 13034 genus 426 0 0 426 species 292566 Dactylococcopsis salina 1 97 0 1 genus 146785 Thermosynechococcus elongatus 1 146786 species 97 0 genus 1129 26 Synechococcus 5641 51 0 1 1 Synechococcus lividus species 33070 0 174 23 no rank 2626047 5197 0 217 0 1 Synechococcus sp. PCC 7003 species 374981 0 306 585423 species 1 Synechococcus sp. KORDI-49 1 Synechococcus sp. PCC 7502 1173263 species 0 341 Synechococcus sp. CC9311 1 species 64471 125 0 species 321327 1 Synechococcus sp. JA-3-3Ab 0 374 Synechococcus sp. PCC 8807 1 195248 species 0 183 Synechococcus sp. NIES-970 1 1827144 species 0 200 species 32049 Synechococcus sp. PCC 7002 1 132 0 1 Synechococcus sp. CC9605 110662 species 0 173 292 0 species 1916956 1 Synechococcus sp. SynAce01 1 Synechococcus sp. WH 8103 species 29410 176 0 319 0 1 Synechococcus sp. UTEX 2973 1350461 species 0 122 Synechococcus sp. PCC 73109 1 species 374982 Synechococcus sp. KORDI-100 1 species 1280380 143 0 210 0 1 Synechococcus sp. WH 7803 32051 species 174 0 species 585425 Synechococcus sp. KORDI-52 1 species 195498 Synechococcus sp. PCC 7117 1 0 192 1 Synechococcus sp. PCC 6312 species 195253 333 0 1 Synechococcus sp. JA-2-3B'a(2-13) species 321332 467 0 Synechococcus sp. WH 8109 1 species 166314 113 0 0 245 species 316278 Synechococcus sp. RCC307 1 0 184 Synechococcus sp. CC9902 1 316279 species 84588 species Synechococcus sp. WH 8102 1 176 0 species 32046 1 Synechococcus elongatus 0 219 0 227 1 2303730 family 0 227 1 genus 170610 1209493 species 1 Halomicronema hongdechloris 227 0 5 Leptolyngbyaceae 1890438 family 1 0 8 1096 4 genus 47251 0 1088 Leptolyngbya boryana 1 species 1184 0 183 2650499 no rank 3 905 0 0 340 1 Leptolyngbya sp. PCC 7376 species 111781 1080068 species 1 Leptolyngbya sp. O-77 327 0 0 238 1 Leptolyngbya sp. NIES-3755 species 1752064 no rank 1983111 1 0 128 species 718217 1 cyanobacterium endosymbiont of Epithemia turgida 128 0 1 0 24 1470409 622 Actinobacteria 201174 phylum 0 403 4 1752188 no rank 1848756 species Actinobacteria bacterium IMCC26103 1 45 0 91 0 1 Actinobacteria bacterium IMCC19121 species 1848754 0 66 1848755 species 1 Actinobacteria bacterium IMCC26077 201 0 1848255 species Actinobacteria bacterium IMCC25003 1 1 475 1 0 Rubrobacteria 6 class 84995 0 1 474 8 84996 order Rubrobacterales 5 0 1 466 3 84997 family 4 Rubrobacteraceae 0 1 463 2 42255 genus 3 Rubrobacter Rubrobacter radiotolerans 1 species 42256 120 0 0 341 1 Rubrobacter xylanophilus 49319 species class 84992 3 0 238 Acidimicrobiales 3 order 84993 8 238 1 0 2448023 family 1 0 148 148 0 genus 682522 1 148 0 species 467094 Ilumatobacter coccineus 1 82 0 1 84994 family 0 82 53634 genus 1 species 53635 1 Acidimicrobium ferrooxidans 82 0 159 83885 1 0 Coriobacteriia 31 84998 class 47 5580 1 0 13 Coriobacteriales order 84999 2537 255 0 1 1643824 family Atopobiaceae 6 genus 133925 4 Olsenella 0 1 1267 18 species 1805478 1 Olsenella sp. Marseille-P2300 452 0 444 0 1 no rank 2638792 species 712411 1 Olsenella sp. oral taxon 807 444 0 species 133926 Olsenella uli 1 0 353 1015 0 1 genus 2767353 1015 0 1382 species 1 Atopobium parvulum 2996 1186 0 1 family 84107 6 Coriobacteriaceae no rank 84113 1 364 0 0 364 1 Coriobacteriaceae bacterium 68-1-3 species 1531429 Coriobacterium 2 33870 genus 1 0 1 325 species 33871 Coriobacterium glomerans 1 0 324 1 0 4 1121 2 Collinsella 102106 genus 0 1117 74426 species 1 Collinsella aerofaciens 1 0 46 78146 17 Eggerthellales 1643822 order 1 0 5455 78100 16 Eggerthellaceae family 1643826 3 Gordonibacter genus 644652 1 0 10 3660 species 1335613 1 Gordonibacter urolithinfaciens 0 2123 species 1841863 1 Gordonibacter massiliensis 0 1527 1162 0 447020 genus 1 species 446660 Adlercreutzia equolifaciens 1 0 1162 319 2 0 1 1981050 genus Phoenicibacter 2 1944646 species Phoenicibacter massiliensis 1 0 317 1 0 1 865 Slackia 2 84108 genus 84110 species Slackia heliotrinireducens 1 864 0 79603 genus Denitrobacterium 2 590 1 0 1 Denitrobacterium detoxificans 1 79604 species 589 0 genus 84162 2 Cryptobacterium 224 1 0 1 1 Cryptobacterium curtum species 84163 223 0 3 Eggerthella genus 84111 36 65825 1 0 2648737 no rank 1 0 805 Eggerthella sp. YY7918 1 species 502558 0 805 0 64984 species 84112 Eggerthella lenta 1 0 1 351 1 1497346 class Thermoleophilia 5 Solirubrobacterales 4 588673 order 17 350 1 0 320583 family 3 Conexibacteraceae 333 13 0 1 7 320 1 0 Conexibacter 2 genus 191494 Conexibacter woesei 1 191495 species 0 313 572 Actinobacteria class 1760 1 0 2607 1385033 18 Actinomycetales 2037 order 7 16108 1 0 17 Actinomycetaceae family 2049 1687 16101 1 0 0 1 9396 50 genus 1654 9 Actinomyces 1029 0 3 2609248 no rank 2081702 species 1 Actinomyces sp. oral taxon 897 0 339 1851395 species Actinomyces sp. Chiba101 1 332 0 1 Actinomyces sp. oral taxon 414 species 712122 358 0 0 337 Actinomyces radicidentis 1 species 111015 1960083 species Actinomyces gaoshouyii 1 0 229 1 Actinomyces pacaensis 1852377 species 0 6612 0 883 544580 species Actinomyces oris 1 species 1912795 1 Actinomyces sp. VUL4_3 0 256 genus 2050 Mobiluncus 2 0 1 1296 78 0 1218 Mobiluncus curtisii 1 2051 species 0 1 225 1 28263 genus 2 Arcanobacterium species 28264 1 Arcanobacterium haemolyticum 224 0 1069494 genus 1 0 532 1661 species 1 Trueperella pyogenes 532 0 1 genus 2529408 0 2695 1 Actinomyces meyeri species 52773 0 2695 1653174 genus 1 0 270 59505 species Actinotignum schaalii 1 270 0 1 0 2 719 Geodermatophilales 8 order 1643682 7 Geodermatophilaceae family 85030 1 0 22 717 190 3 0 1 38501 genus 2 Blastococcus 0 187 species 138336 1 Blastococcus saxobsidens 190 5 0 1 1860 genus 2 Geodermatophilus Geodermatophilus obscurus 1 species 1861 0 185 88138 genus Modestobacter 2 0 1 315 10 species 477641 1 Modestobacter marinus 0 305 2861 15 0 1 85012 order Streptosporangiales 15 1 0 1 316 3 Thermomonosporaceae 2012 family 0 1 315 5 genus 2019 2 Thermomonospora 310 0 1 Thermomonospora curvata 2020 species 10 1480 1 0 6 Nocardiopsaceae 83676 family genus 83677 1 292 0 species 2021 1 Thermobifida fusca 292 0 Nocardiopsis 4 genus 2013 12 1178 1 0 1 Nocardiopsis alba species 53437 350 0 0 498 1 Nocardiopsis dassonvillei species 2014 318 0 280236 species 1 Nocardiopsis gilva 1050 63 0 1 2004 family 5 Streptosporangiaceae 1 0 9 590 2 Nonomuraea genus 83681 581 0 1 2593643 no rank species 1909395 1 Nonomuraea sp. ATCC 55076 581 0 2 Streptosporangium 2000 genus 7 397 1 0 1 Streptosporangium roseum species 2001 0 390 126 0 2 order 1643683 family 85032 Acidothermaceae 2 0 1 126 1 0 125 28048 genus 1 0 125 species 28049 1 Acidothermus cellulolyticus 2 622450 order 198 0 2 Actinopolysporaceae 622451 family 1 0 1 198 genus 1849 1 0 197 197 0 species 414996 1 Actinopolyspora erythraea 1643684 order 3 0 221 family 85031 3 Nakamurellaceae 221 6 0 1 0 1 215 4 genus 53460 2 Nakamurella 211 0 Nakamurella multipartita 1 53461 species order 85010 41 Pseudonocardiales 9892 79 0 1 family 2070 Pseudonocardiaceae 40 9813 172 0 1 Amycolatopsis 7 genus 1813 1 0 15 2775 species 208439 Amycolatopsis japonica 1 317 0 no rank 2618356 2 0 905 0 539 1 Amycolatopsis sp. AA4 species 1896961 366 0 species 1911175 Amycolatopsis sp. BJA-103 1 Amycolatopsis methanolica 1 species 1814 0 385 461 0 33910 species 1 Amycolatopsis mediterranei 692 0 31958 species Amycolatopsis orientalis 1 Actinosynnema 3 genus 40566 52 815 1 0 387 0 40567 species 1 Actinosynnema mirum 376 0 42197 species Actinosynnema pretiosum 1 genus 165301 Lentzea 2 0 1 403 1 Lentzea guizhouensis 1 species 1586287 402 0 2 Saccharomonospora 1851 genus 3 174 1 0 species 1852 Saccharomonospora viridis 1 0 171 2 Kutzneria genus 43356 1 0 9 614 605 0 species 43357 1 Kutzneria albida 0 1 361 7 genus 142577 Prauserella 2 0 354 530584 species 1 Prauserella marina 2 Kibdelosporangium 2029 genus 2 495 1 0 493 0 species 860235 1 Kibdelosporangium phytohabitans 313 0 1 genus 1835 1 Saccharopolyspora erythraea 1836 species 313 0 349 5 0 1 2071 genus Saccharothrix 2 Saccharothrix espanaensis 1 species 103731 0 344 65496 genus 6 Actinoalloteichus 1446 23 0 1 296 0 species 1612552 Actinoalloteichus sp. ADI127-7 1 0 517 2 2644606 no rank 304 0 1612551 species Actinoalloteichus sp. GBA129-24 1 2072503 species 1 Actinoalloteichus sp. AHMU CJ021 213 0 334 0 340345 species Actinoalloteichus hymeniacidonis 1 276 0 1 Actinoalloteichus hoggarensis species 1470176 254 2 0 1 674734 genus Alloactinosynnema 2 1 no rank 2636053 0 252 Alloactinosynnema sp. L-07 1 species 1653480 252 0 27 1642 1 0 Pseudonocardia 8 genus 1847 Pseudonocardia dioxanivorans 1 240495 species 0 253 no rank 2619320 6 0 1362 0 304 Pseudonocardia sp. EC080619-01 1 1096856 species 246 0 1096868 species 1 Pseudonocardia sp. EC080625-04 1690815 species 1 Pseudonocardia sp. HH130630-07 176 0 1641402 species 1 Pseudonocardia sp. HH130629-09 157 0 1 Pseudonocardia sp. EC080610-09 species 1688404 0 284 195 0 445576 species Pseudonocardia sp. AL041005-10 1 1 0 33 6605 Propionibacteriales 33 order 85009 31957 family Propionibacteriaceae 19 0 1 4734 87 Microlunatus 2 29404 genus 1 0 4 293 Microlunatus phosphovorus 1 29405 species 289 0 10 1254 1 0 5 Tessaracoccus 72763 genus 0 310 1 Tessaracoccus aquimaris 1332264 species 310 0 1 no rank 2635419 species 1909732 Tessaracoccus sp. T2.5-30 1 0 310 species 399497 1 Tessaracoccus flavescens 325 0 1610493 species 1 Tessaracoccus flavus 299 0 0 200 1 2801844 genus 200 0 Pseudopropionibacterium propionicum 1 species 1750 0 1 496 4 genus 1743 3 Propionibacterium 1 2608905 no rank 178 0 Propionibacterium sp. oral taxon 193 1 species 671223 0 178 314 0 1 Propionibacterium freudenreichii species 1744 0 1551 3 genus 1912216 species 33011 1 Cutibacterium granulosum 0 137 species 33010 1 Cutibacterium avidum 385 0 1029 0 1 Cutibacterium acnes 1747 species 303 4 0 1 genus 1912215 Acidipropionibacterium 2 299 0 1 Acidipropionibacterium acidipropionici species 1748 2 Propionimicrobium 203133 genus 1 550 1 0 no rank 2633994 1 0 549 549 0 Propionimicrobium sp. Marseille-P3275 1 species 1871034 41 1838 1 0 Nocardioidaceae 13 family 85015 3 262 1 0 Pimelobacter 2 genus 2044 0 259 1 Pimelobacter simplex species 2045 116071 genus Micropruina 2 333 4 0 1 0 329 Micropruina glycogenica 1 75385 species 2 156 1 0 Aeromicrobium 2 genus 2040 154 0 2041 species 1 Aeromicrobium erythreum 2 Kribbella genus 182639 1 0 11 347 0 336 Kribbella flavida 1 species 182640 0 1 699 24 1839 genus Nocardioides 4 Nocardioides sp. 78 1 2045452 species 0 226 0 237 Nocardioides dokdonensis 1 species 450734 1 no rank 2615069 0 212 0 212 species 196162 1 Nocardioides sp. JS614 10 2039638 order 0 1694 0 1694 10 2162846 family 0 975 3 genus 2039639 1884915 species 1 Candidatus Nanopelagicus hibericus 0 86 57 0 1 Candidatus Nanopelagicus limnes 1884634 species Candidatus Nanopelagicus abundans 1 species 1884916 832 0 1 0 1 719 7 Candidatus Planktophila 622681 genus Candidatus Planktophila dulcis 1 species 1884914 59 0 1884907 species 1 Candidatus Planktophila vernalis 84 0 0 46 Candidatus Planktophila sulfonica 1 1884904 species 0 211 1 Candidatus Planktophila lacus 1884913 species 1 Candidatus Planktophila versatilis 1884905 species 244 0 Candidatus Planktophila limnetica 1 species 573600 74 0 no rank 1643818 2 220 0 genus 147067 2 Thermobispora 220 3 0 1 0 217 2006 species 1 Thermobispora bispora 85007 order 159 Corynebacteriales 0 1 35497 291 85029 family Dietziaceae 3 0 1 285 1 284 0 2 genus 37914 1 Dietzia timorensis 499555 species 0 123 1 no rank 2617939 0 161 0 161 Dietzia sp. oral taxon 368 1 712270 species 31 Nocardiaceae 85025 family 69 8800 1 0 Nocardia 7 genus 1817 84 2807 1 0 0 363 species 455432 Nocardia terpenica 1 619 0 Nocardia brasiliensis 1 species 37326 species 135487 1 Nocardia cyriacigeorgica 645 0 37329 species 1 Nocardia farcinica 434 0 Nocardia nova 1 species 37330 327 0 335 0 1 Nocardia seriolae species 37332 1 0 216 5924 Rhodococcus 23 genus 1827 37919 species 1 Rhodococcus opacus 784 0 species 1828 1 Rhodococcus fascians 369 0 1833 species 1 Rhodococcus erythropolis 0 291 132919 species Rhodococcus jostii 1 0 444 334542 species 1 Rhodococcus qingshengii 230 0 1 Rhodococcus rhodochrous 1829 species 0 178 0 263 Rhodococcus ruber 1 1830 species 222 0 Rhodococcus aetherivorans 1 191292 species 192 0 species 103816 Rhodococcus pyridinivorans 1 125 0 1 Rhodococcus hoagii 43767 species 2610 0 12 no rank 192944 species 1653478 1 Rhodococcus sp. PBTS 1 124 0 384 0 Rhodococcus sp. PBTS 2 1 1653479 species 1033922 species 1 Rhodococcus sp. WB1 371 0 Rhodococcus sp. 008 1 species 1723645 266 0 1 Rhodococcus sp. YL-1 1045808 species 167 0 0 196 1570939 species Rhodococcus sp. 2G 1 species 1805827 Rhodococcus sp. MTM3W5.2 1 0 134 0 205 Rhodococcus sp. B7740 1 species 1564114 935199 species Rhodococcus sp. p52 1 0 205 species 1727214 Rhodococcus sp. H-CA8f 1 265 0 0 120 species 1807790 Rhodococcus sp. BH4 1 species 679318 1 Rhodococcus sp. WMMA185 0 173 134 0 1 697024 no rank 1 1847725 genus 0 134 134 0 Lawsonella clevelandensis 1 1528099 species 0 1 1379 52 85026 family Gordoniaceae 9 45 1327 1 0 Gordonia 8 genus 2053 169 0 Gordonia phthalatica 1 1136941 species 1 Gordonia terrae species 2055 167 0 84595 species Gordonia polyisoprenivorans 1 198 0 Gordonia iterans 1 1004901 species 189 0 Gordonia bronchialis 1 2054 species 0 125 2 2657482 no rank 0 434 species 2059875 1 Gordonia sp. YC-JH1 0 178 0 256 Gordonia sp. KTR9 1 species 337191 family 85028 Tsukamurellaceae 4 550 9 0 1 genus 2060 3 Tsukamurella 541 4 0 1 0 396 species 57704 Tsukamurella tyrosinosolvens 1 141 0 1 Tsukamurella paurometabola species 2061 124 0 family 316606 2 0 1 124 6 genus 286801 Segniliparus 2 286802 species 1 Segniliparus rotundus 118 0 family 1653 Corynebacteriaceae 52 12093 78 0 1 162 12015 1 0 Corynebacterium 51 genus 1716 species 43771 1 Corynebacterium urealyticum 0 707 187491 species 1 Corynebacterium glaucum 0 152 species 203263 1 Corynebacterium aquilae 0 166 1 Corynebacterium ulcerans 65058 species 0 345 0 164 Corynebacterium deserti 1 1408191 species 1 Corynebacterium diphtheriae 1717 species 381 0 0 182 species 161899 Corynebacterium singulare 1 206 0 136857 species Corynebacterium testudinoris 1 0 147 1 Corynebacterium kroppenstedtii 161879 species 317 0 1223514 species Corynebacterium humireducens 1 191493 species 1 Corynebacterium sphenisci 0 213 0 131 species 161895 Corynebacterium phocae 1 141 0 1072256 species 1 Corynebacterium uterequi 0 270 species 1719 1 Corynebacterium pseudotuberculosis species 401472 Corynebacterium ureicelerivorans 1 0 209 1 Corynebacterium glyciniphilum species 1404244 132 0 394 0 species 1718 1 Corynebacterium glutamicum 138 0 1 Corynebacterium crudilactis 1652495 species 248 0 species 1231000 1 Corynebacterium lactis 173 0 1 Corynebacterium camporealensis 161896 species 1 [Brevibacterium] flavum 92706 species 159 0 species 89154 1 Corynebacterium terpenotabidum 129 0 0 221 Corynebacterium aurimucosum 1 169292 species 312 0 1 Corynebacterium simulans 146827 species 0 461 1 Corynebacterium variabile species 1727 193 0 1 Corynebacterium ammoniagenes 1697 species 1 Corynebacterium mustelae species 571915 0 249 1 Corynebacterium cystitidis 35757 species 179 0 0 307 1 Corynebacterium falsenii species 108486 1050174 species 1 Corynebacterium epidermidicanis 0 141 0 168 28028 species Corynebacterium flavescens 1 no rank 2624378 2 356 0 Corynebacterium sp. NML98-0116 1 702967 species 0 203 0 153 1 Corynebacterium sp. ATCC 6931 species 1487956 species 152794 1 Corynebacterium efficiens 0 211 156978 species Corynebacterium imitans 1 186 0 0 223 1 Corynebacterium frankenforstense species 1230998 0 141 Corynebacterium doosanense 1 1121358 species 181 0 1 Corynebacterium atypicum 191610 species 282 0 1 Corynebacterium halotolerans species 225326 0 106 1721 species Corynebacterium callunae 1 0 935 43770 species Corynebacterium striatum 1 0 166 1 Corynebacterium casei species 160386 Corynebacterium stationis 1 species 1705 0 203 349751 species Corynebacterium marinum 1 260 0 484 0 Corynebacterium jeikeium 1 38289 species 0 127 species 575200 Corynebacterium maris 1 species 42817 Corynebacterium argentoratense 1 0 111 147 0 35755 species Corynebacterium kutscheri 1 Corynebacterium vitaeruminis 1 species 38305 201 0 species 258224 Corynebacterium resistens 1 0 198 family 1762 Mycobacteriaceae 56 0 1 11841 84 1073531 genus 2 0 546 1788 species 1 Mycobacterium terrae 0 276 Mycobacterium sinense 1 875328 species 0 270 0 174 genus 697025 1 species 639313 1 Hoyosella subflava 0 174 0 3409 13 genus 1866885 Mycobacterium vanbaalenii 1 species 110539 0 376 758802 species 1 Mycobacterium litorale 0 300 Mycobacterium vaccae 1 species 1810 217 0 1800 species 1 Mycobacterium chubuense 0 190 Mycobacterium neoaurum 1 1795 species 0 186 species 1771 Mycobacterium phlei 1 0 401 364 0 1 Mycobacterium gilvum 1804 species 36814 species Mycobacterium rhodesiae 1 188 0 1 Mycobacterium fortuitum 1766 species 138 0 0 295 1772 species 1 Mycobacterium smegmatis 0 209 1791 species Mycobacterium aurum 1 Mycobacterium thermoresistibile 1 species 1797 0 132 species 134601 Mycobacterium goodii 1 413 0 1 0 399 6322 Mycobacterium 34 1763 genus 253 0 1768 species 1 Mycobacterium kansasii 268 0 Mycobacterium dioxanotrophicus 1 species 482462 4 77643 species group 0 428 species 1773 3 Mycobacterium tuberculosis 316 106 0 1 0 110 1765 biotype 1 Mycobacterium bovis 0 100 Mycobacterium africanum 1 33894 biotype Mycobacterium canettii 1 species 78331 112 0 254 0 Mycobacterium haemophilum 1 29311 species species 1781 Mycobacterium marinum 1 0 211 no rank 2642494 13 2466 0 species 1682113 1 Mycobacterium sp. YC-RL4 145 0 0 167 species 1920667 1 Mycobacterium sp. WY10 species 1168287 1 Mycobacterium sp. MOTT36Y 80 0 146 0 species 164757 Mycobacterium sp. JLS 1 0 323 1 Mycobacterium sp. EPa45 1545728 species 168 0 species 164756 Mycobacterium sp. MCS 1 0 187 1 Mycobacterium sp. QIA-37 1561223 species 0 172 Mycobacterium sp. KMS 1 189918 species 275 0 1 Mycobacterium sp. djl-10 1879023 species species 212767 1 Mycobacterium sp. JS623 223 0 0 186 species 1570328 1 Mycobacterium sp. NRRL B-3805 1 Mycobacterium sp. VKM Ac-1817D species 1273687 130 0 species 2051552 Mycobacterium sp. PYR15 1 264 0 1440 0 120793 species group 8 0 615 Mycobacterium avium 1 species 1764 56 0 1138383 species 1 Mycobacterium paraintracellulare 119 0 701042 species 1 Mycobacterium marseillense 241 0 Mycobacterium colombiense 1 339268 species 1767 species 4 Mycobacterium intracellulare 0 1 409 74 227 0 222805 subspecies 1 Mycobacterium chimaera 0 58 1203599 subspecies Mycobacterium yongonense 1 Mycobacterium indicus pranii 1 subspecies 35617 0 50 1 Mycobacterium ulcerans 1809 species 0 233 1 species group 2249310 156 0 156 0 1 Mycobacterium shigaense species 722731 53 0 Mycobacterium leprae 1 species 1769 0 161 1 Mycobacterium liflandii 261524 species 670516 genus 5 1306 0 0 121 Mycobacterium immunogenum 1 83262 species 0 165 1 Mycobacterium chelonae species 1774 565 0 36809 species Mycobacterium abscessus 1 0 229 1578165 species 1 Mycobacterium saopaulense 1520670 species 1 Mycobacterium stephanolepidis 0 226 24 Bifidobacteriales 85004 order 1 0 143 1240456 7209 1240313 1 0 23 Bifidobacteriaceae 31953 family 0 247 1 genus 196081 0 247 78259 species 1 Scardovia inopinata 196082 genus 1 229 0 229 0 Parascardovia denticolens 1 78258 species 0 693 1 2701 genus 693 0 1 Gardnerella vaginalis species 2702 Bifidobacterium 19 genus 1678 1 0 1718 1231935 1 Bifidobacterium dentium 1689 species 1435 0 0 229 species 1691 Bifidobacterium indicum 1 1 Bifidobacterium choerinum 35760 species 470 0 588 0 species 158787 1 Bifidobacterium scardovii Bifidobacterium angulatum 1 1683 species 0 1945 0 186432 species 28026 Bifidobacterium pseudocatenulatum 1 Bifidobacterium breve 1 species 1685 0 98791 species 1684 1 Bifidobacterium asteroides 0 314 827308 0 216816 species 1 Bifidobacterium longum 0 600 28025 species Bifidobacterium animalis 1 Bifidobacterium bifidum 1 species 1681 0 16732 2 Bifidobacterium catenulatum 1686 species 1 0 21092 77850 1 Bifidobacterium kashiwanohense 630129 subspecies 0 56758 1 Bifidobacterium pseudolongum species 1694 443 0 0 2284 1 Bifidobacterium thermophilum 33905 species 152 0 1 Bifidobacterium coryneforme 1687 species 14503 0 species 1680 Bifidobacterium adolescentis 1 638619 species 1 Bifidobacterium actinocoloniiforme 0 141 1 0 2 1109 7 Frankiales 85013 order 74712 family 6 Frankiaceae 1107 62 0 1 genus 1854 5 Frankia 0 1 1045 14 0 312 1 no rank 2632575 312 0 1 Frankia sp. EAN1pec 298653 species 0 208 Frankia casuarinae 1 106370 species 0 251 species 1859 Frankia alni 1 0 260 Frankia inefficax 1 298654 species 0 1 4368 5 85008 order 19 Micromonosporales 0 1 4363 100 28056 family 18 Micromonosporaceae 0 343 genus 168694 2 species 168695 1 Salinispora tropica 157 0 186 0 Salinispora arenicola 1 168697 species 84593 genus 1 Verrucosispora 0 1 2043 52 0 1 1865 genus 6 Actinoplanes species 196914 Actinoplanes friuliensis 1 528 0 0 1130 2626549 no rank 3 Actinoplanes sp. N902-109 1 species 649831 356 0 2033844 species Actinoplanes sp. SE50 1 0 387 Actinoplanes sp. SE50/110 1 species 134676 0 387 species 1866 1 Actinoplanes missouriensis 0 333 673534 genus Plantactinospora 4 994 11 0 1 3 2631981 no rank 0 983 1 Plantactinospora sp. BB1 2071627 species 334 0 1 Plantactinospora sp. KBS50 species 2024580 356 0 1 Plantactinospora sp. BC1 species 2108470 293 0 882 1 0 1 1873 genus 4 Micromonospora 310 0 no rank 2617518 1 310 0 648999 species Micromonospora sp. L5 1 1 Micromonospora aurantiaca species 47850 0 308 Verrucosispora maris 1 species 1003110 0 263 1 0 26 316 Catenulisporales 4 order 414714 290 1 0 1 family 414877 Catenulisporaceae 3 0 1 289 11 414878 genus Catenulispora 2 1 Catenulispora acidiphila species 304895 0 278 order 85014 4 Glycomycetales 460 2 0 1 Glycomycetaceae 3 family 85034 1 458 1 0 5 457 1 0 Stackebrandtia 2 283810 genus 452 0 species 283811 Stackebrandtia nassauensis 1 0 1 261 1 order 622452 Kineosporiales 4 0 1 260 3 83778 family 3 Kineosporiaceae genus 33981 Kineococcus 2 0 1 257 3 species 131568 Kineococcus radiotolerans 1 0 254 95 0 no rank 52018 1 1650658 species 1 Actinobacteria bacterium IMCC26256 95 0 124 28534 1 0 82 Streptomycetales order 85011 320 28410 1 0 81 Streptomycetaceae 2062 family 1883 genus 75 Streptomyces 26716 845 0 1 146923 species Streptomyces parvulus 1 236 0 0 271 species 1616117 1 Streptomyces formicae 0 319 species 1907 1 Streptomyces glaucescens 1 Streptomyces pluripotens species 1355015 0 288 0 283 1 Streptomyces rubrolavendulae species 285473 0 262 Streptomyces niveus 1 193462 species 371 0 species 1969 Streptomyces chartreusis 1 species 1901 Streptomyces clavuligerus 1 278 0 Streptomyces autolyticus 1 species 75293 372 0 0 225 1169025 species 1 Streptomyces pratensis 0 7407 no rank 2593676 24 0 354 1849967 species Streptomyces sp. SAT1 1 species 444103 Streptomyces sp. CNQ-509 1 0 235 0 231 species 1964449 1 Streptomyces sp. 3211 0 296 1972846 species 1 Streptomyces sp. Sge12 1 Streptomyces sp. TN58 234612 species 461 0 1 Streptomyces sp. RTd22 species 1841249 0 518 221 0 1984801 species 1 Streptomyces sp. CLI2509 862751 species 1 Streptomyces sp. SirexAA-E 225 0 0 301 Streptomyces sp. FR-008 1 species 206662 species 465541 1 Streptomyces sp. Mg1 271 0 432 0 Streptomyces sp. PAMC 26508 1 species 1265601 272 0 1 Streptomyces sp. Tue 6075 species 1661694 0 340 2094021 species Streptomyces sp. WAC00288 1 Streptomyces sp. 769 1 species 1262452 345 0 243 0 species 1561022 Streptomyces sp. CCM_MD2014 1 1812480 species 1 Streptomyces sp. fd1-xmd 357 0 Streptomyces sp. MOE7 1 1961713 species 0 201 species 1495638 1 Streptomyces sp. M56 382 0 315 0 species 1751294 1 Streptomyces sp. 4F 0 283 Streptomyces sp. CFMR 7 1 1649184 species 1 Streptomyces sp. CMB-StM0423 2059884 species 235 0 214 0 1837283 species 1 Streptomyces sp. S8 0 356 species 1725411 1 Streptomyces sp. CdTB01 0 319 species 2135430 Streptomyces sp. P3 1 447 0 379067 species 1 Streptomyces bingchenggensis 0 310 species 1038928 Streptomyces xinghaiensis 1 1916 species 1 Streptomyces lividans 0 253 0 335 1 Streptomyces griseochromogenes 68214 species 0 245 Streptomyces collinus 1 42684 species 356 0 Streptomyces leeuwenhoekii 1 species 1437453 1935 species 1 Streptomyces violaceoruber 0 315 species 38300 1 Streptomyces pristinaespiralis 360 0 419 0 1 Streptomyces puniciscabiei 164348 species 266 0 Streptomyces gilvosporeus 1 553510 species 0 381 68570 species 1 Streptomyces albulus 1912 species 1 Streptomyces hygroscopicus 980 0 Streptomyces scabiei 1 1930 species 0 279 Streptomyces ambofaciens 1 species 1889 0 484 434 0 1 Streptomyces sp. S10(2016) species 1783515 0 418 Streptomyces sp. XZHG99 1 species 2049881 0 659 2 species group 629295 1482558 species subgroup 1 0 192 species 1908 Streptomyces globisporus 1 0 192 1482596 species subgroup 1 0 467 467 0 Streptomyces griseus 1 species 1911 54571 species 1 Streptomyces venezuelae 544 0 475 0 Streptomyces violaceusniger 1 68280 species Streptomyces malaysiensis 1 species 92644 458 0 Streptomyces albus 1 1888 species 0 643 0 640 2 1477431 species group 0 366 species 42239 1 Streptomyces sampsonii 274 0 species 1902 1 Streptomyces coelicolor Streptomyces fulvissimus 1 species 68202 219 0 265 0 Streptomyces alfalfae 1 species 1642299 1 Streptomyces reticuli 1926 species 0 377 0 307 1 Streptomyces peucetius species 1950 1 Streptomyces lavendulae 1914 species 0 340 0 664 species 47763 1 Streptomyces lydicus 566 0 Streptomyces pactum 1 species 68249 307 0 species 68192 1 Streptomyces cyaneogriseus 0 250 species 1971 Streptomyces noursei 1 1940 species Streptomyces albireticuli 1 300 0 1 Streptomyces cattleya species 29303 441 0 Streptomyces lincolnensis 1 1915 species 0 370 0 324 species 33903 Streptomyces avermitilis 1 380 0 1 Streptomyces xiamenensis species 408015 333 0 species 362257 Streptomyces vietnamensis 1 415 0 species 67267 1 Streptomyces alboflavus Kitasatospora 5 genus 2063 1 0 24 1374 species 2066 1 Kitasatospora setae 317 0 358 0 Kitasatospora aureofaciens 1 species 1894 270 0 species 68173 Kitasatospora albolonga 1 no rank 2633591 1 0 405 0 405 2018025 species Kitasatospora sp. MMS16-BH015 1 133 Micrococcales order 85006 1 0 200 32686 6668 64 0 1 family 85023 45 Microbacteriaceae 1 genus 1434032 74 0 1159327 species Pontimonas salivibrio 1 0 74 213 0 2 1655488 no rank 0 213 2 clade 1655489 0 213 529883 genus 2 68 0 species 529884 1 Rhodoluna lacicola species 535712 Candidatus Rhodoluna planktonica 1 145 0 0 1 237 1 genus 518733 2 Microterricola 236 0 species 412690 Microterricola viridarii 1 genus 33877 2 Agromyces 308 2 0 1 0 306 Agromyces aureus 1 453304 species 1 396 1 0 4 Curtobacterium genus 2034 2 no rank 257496 268 0 0 136 Curtobacterium sp. MR_MD2014 1 1561023 species 0 132 1 Curtobacterium sp. BH-2-1-1 1905847 species Curtobacterium pusillum 1 species 69373 0 127 7 154 1 0 2 Cnuibacter 1759331 genus 1 Cnuibacter physcomitrellae 1619308 species 0 147 33882 genus 14 Microbacterium 2743 53 0 1 no rank 2609290 8 0 1785 1 Microbacterium sp. TPU 3598 1938334 species 176 0 0 186 Microbacterium sp. CGR1 1 species 1696072 1714373 species 1 Microbacterium sp. No. 7 0 219 0 298 1 Microbacterium sp. str. 'China' species 2103230 Microbacterium sp. BH-3-3-3 1 1906742 species 224 0 Microbacterium sp. PAMC 28756 1 species 1795053 267 0 207 0 species 367477 1 Microbacterium sp. XT11 208 0 Microbacterium sp. 1.5R 1 species 1916917 162 0 species 162426 Microbacterium hominis 1 0 158 84292 species 1 Microbacterium chocolatum 225 0 Microbacterium paludicola 1 300019 species 36805 species 1 Microbacterium aurum 0 163 0 197 1 Microbacterium testaceum species 2033 genus 110932 2 Leifsonia 431 1 0 1 0 430 Leifsonia xyli 1 species 1575 genus 337004 1 161 0 Microcella alkaliphila 1 species 279828 0 161 667 53 0 1 genus 1573 Clavibacter 6 species 28447 Clavibacter michiganensis 5 0 1 614 126 1874630 subspecies Clavibacter capsici 1 111 0 subspecies 33014 Clavibacter insidiosus 1 149 0 31964 subspecies Clavibacter sepedonicus 1 114 0 114 0 subspecies 31963 Clavibacter nebraskensis 1 1 727 1 0 Cryobacterium 3 69578 genus species 670052 Cryobacterium arcticum 1 378 0 348 0 2649013 no rank 1 species 1978566 Cryobacterium sp. LW097 1 0 348 1705353 genus 1 0 81 0 81 1 Aurantimicrobium minutum species 708131 1 447237 genus 0 173 173 0 1 2626248 no rank 0 173 1795630 species Frondihabitans sp. PAMC 28766 1 Rathayibacter 3 33886 genus 1 0 1 239 33888 species 1 Rathayibacter tritici 0 94 0 144 145458 species Rathayibacter toxicus 1 family 1268 38 Micrococcaceae 0 1 20303 1644 1868332 genus Neomicrococcus 2 1134 72 0 1 Neomicrococcus aestuarii 1 556325 species 1062 0 0 175 1 genus 2078575 1618207 species 1 Arthrobacter sp. IHBB 11108 175 0 1663 genus 15 Arthrobacter 0 1 4817 118 3693 0 12 no rank 235627 191 0 1771959 species Arthrobacter sp. ATCC 21022 1 Arthrobacter sp. U41 1 1849032 species 268 0 Arthrobacter sp. Rue61a 1 1118963 species 0 312 0 280 1 Arthrobacter sp. LS16 species 1690248 1357915 species Arthrobacter sp. QXT-31 1 0 253 0 223 1806905 species Arthrobacter sp. ZXY-2 1 440 0 1494608 species 1 Arthrobacter sp. PAMC 25486 0 404 species 2020486 1 Arthrobacter sp. YN Arthrobacter sp. ERGS1:01 1 species 1704044 398 0 0 353 Arthrobacter sp. YC-RL1 1 1652545 species 1 Arthrobacter sp. FB24 species 290399 0 287 284 0 Arthrobacter sp. PGP41 1 2079227 species 408 0 1 Arthrobacter crystallopoietes species 37928 species 656366 Arthrobacter alpinus 1 598 0 0 61 1645 genus 1 0 61 1646 species 1 Renibacterium salmoninarum 877 7 0 1 genus 1742993 Pseudarthrobacter 4 0 325 1 Pseudarthrobacter phenanthrenivorans species 361575 0 249 Pseudarthrobacter chlorophenolicus 1 85085 species 1 Pseudarthrobacter sulfonivorans species 121292 0 296 0 9478 32207 genus 2 Rothia dentocariosa 1 species 2047 1576 0 1 Rothia mucilaginosa species 43675 0 7902 57493 genus Kocuria 4 571 7 0 1 species 72000 Kocuria rhizophila 1 0 117 1 Kocuria flava species 446860 0 242 0 205 species 71999 1 Kocuria palustris 596707 genus Sinomonas 2 277 5 0 1 species 37927 1 Sinomonas atrocyanea 272 0 genus 1742992 2 Paenarthrobacter 0 1 437 7 1 Paenarthrobacter aurescens species 43663 0 430 Micrococcus 2 1269 genus 1 240 1 0 239 0 1270 species Micrococcus luteus 1 5 592 1 0 2 Glutamicibacter 1742989 genus Glutamicibacter arilaitensis 1 256701 species 587 0 1 0 4 154 3 Beutenbergiaceae family 125316 0 1 150 7 genus 84756 Beutenbergia 2 0 143 species 84757 1 Beutenbergia cavernae 1 0 4 492 Brevibacteriaceae 3 85019 family genus 1696 2 Brevibacterium 488 4 0 1 Brevibacterium linens 1 species 1703 484 0 59 0 1 85022 family 59 0 43673 genus 1 species 43674 Jonesia denitrificans 1 59 0 12 1079 1 0 Promicromonosporaceae 9 family 85017 1 0 4 422 3 Isoptericola genus 254250 139208 species 1 Isoptericola variabilis 0 210 372663 species Isoptericola dokdonensis 1 208 0 3 Cellulosimicrobium genus 157920 11 430 1 0 196 0 1 Cellulosimicrobium cellulans species 1710 223 0 1 no rank 2624466 0 223 1980001 species Cellulosimicrobium sp. TH-20 1 215 2 0 1 genus 186188 Xylanimonas 2 0 213 186189 species Xylanimonas cellulosilytica 1 85016 family 6 Cellulomonadaceae 0 1 688 1 1707 genus 5 Cellulomonas 687 17 0 1 1 Cellulomonas gilvus 11 species 165 0 1 no rank 2620175 0 155 155 0 species 2003551 Cellulomonas sp. PSBB021 1 167 0 Cellulomonas flavigena 1 1711 species 183 0 species 1708 Cellulomonas fimi 1 85018 family 2 0 129 Dermatophilus 2 1862 genus 12 129 1 0 0 117 species 1863 Dermatophilus congolensis 1 27 0 1 no rank 577468 1 2038 genus 27 0 2039 species Tropheryma whipplei 1 27 0 0 1 1286 30 85020 family Dermabacteraceae 9 20 933 1 0 Brachybacterium 6 43668 genus 0 182 1 Brachybacterium sp. VM2412 2017484 species 127 0 Brachybacterium sp. VR2415 1 2017485 species no rank 2623841 1 0 180 180 0 1 Brachybacterium sp. P6-10-X1 1903186 species 1 Brachybacterium faecium species 43669 0 187 Brachybacterium ginsengisoli 1 species 1331682 237 0 0 128 1 36739 genus 128 0 1630135 species Dermabacter vaginalis 1 195 0 1 472568 genus 195 0 species 472569 Devriesea agamarum 1 0 195 2 family 145360 Sanguibacter 2 60919 genus 1 0 3 195 0 192 Sanguibacter keddieii 1 60920 species 85021 family Intrasporangiaceae 8 775 11 0 1 1 0 10 225 2 Serinicoccus 265976 genus 215 0 1758689 species 1 Serinicoccus sp. JLT9 267408 genus 2 Arsenicicoccus 0 1 163 4 0 159 no rank 2663846 1 Arsenicicoccus sp. oral taxon 190 1 1658671 species 159 0 Janibacter 2 genus 53457 28 200 1 0 0 172 857417 species 1 Janibacter indicus genus 53357 1 176 0 0 176 species 53358 1 Intrasporangium calvum 1 0 16 631 Dermacoccaceae 5 family 145357 2 Dermacoccus 57495 genus 3 196 1 0 1274 species 1 Dermacoccus nishinomiyaensis 0 193 0 156 1 57499 genus 156 0 species 1276 Kytococcus sedentarius 1 263 0 745364 genus 1 species 571913 Luteipulveratus mongoliensis 1 263 0 229 0 1 no rank 1859062 0 229 1 genus 262406 1 Thermobaculum terrenum 166501 species 229 0 98 544448 phylum 0 13732 713063 no rank 2 693 0 342 0 1 Tenericutes bacterium MO-XQ 1911684 species 1 Tenericutes bacterium MZ-XQ 1911683 species 0 351 2 no rank 2799557 0 400 0 1 400 2 genus 1912503 2 Candidatus Izimaplasma 2624196 no rank 1 398 0 0 398 species 1541959 1 Candidatus Izimaplasma sp. HR1 Mollicutes 94 31969 class 1 0 10 12639 1 0 16 4918 Mycoplasmatales 43 2085 order 1 0 7 4902 Mycoplasmataceae 42 2092 family 0 1 3388 30 genus 2093 27 Mycoplasma 0 31 1 Mycoplasma genitalium species 2097 0 14 171632 species Mycoplasma ovis 1 0 49 species 2128 1 Mycoplasma flocculare no rank 2683645 1 141 0 0 141 1749074 species 1 Mycoplasma sp. (ex Biomphalaria glabrata) Mycoplasma hyorhinis 1 2100 species 0 78 335 0 Mycoplasma gallisepticum 1 2096 species Mycoplasma dispar 1 species 86660 76 0 0 88 2118 species 1 Mycoplasma mobile 0 96 1 Mycoplasma arthritidis 2111 species 141 0 2099 species 1 Mycoplasma hyopneumoniae 1 Mycoplasma pneumoniae 2104 species 15 0 970 0 3 656088 species group 1 Mycoplasma leachii species 2105 0 184 species 2102 1 Mycoplasma mycoides 0 535 0 251 Mycoplasma capricolum 1 2095 species Mycoplasma suis 1 species 57372 0 126 species 2123 1 Mycoplasma putrefaciens 204 0 0 128 50052 species 1 Mycoplasma crocodyli 0 308 1 Mycoplasma hominis species 2098 0 50 Mycoplasma wenyonii 1 species 65123 species 51365 1 Mycoplasma yeatsii 0 138 51 0 species 29501 1 Mycoplasma haemofelis 0 120 Mycoplasma penetrans 1 species 28227 1 Mycoplasma bovoculi 45362 species 0 66 species 136241 Mycoplasma haemocanis 1 0 17 Mycoplasma canadense 1 29554 species 91 0 species 984991 Mycoplasma parvum 1 0 25 0 186 2 genus 2129 110 0 species 134821 1 Ureaplasma parvum Ureaplasma urealyticum 1 species 2130 76 0 0 1321 12 genus 2767358 0 133 Mycoplasma cynos 1 171284 species Mycoplasma bovigenitalium 1 2112 species 57 0 84 0 1 Mycoplasma canis 29555 species 105 0 29553 species Mycoplasma bovirhinis 1 66 0 Mycoplasma synoviae 1 species 2109 species 2115 1 Mycoplasma fermentans 99 0 species 2113 1 Mycoplasma californicum 135 0 0 56 Mycoplasma pullorum 1 species 48003 374 0 28903 species 1 Mycoplasma bovis 1 Mycoplasma pulmonis 2107 species 50 0 126 0 1 Mycoplasma agalactiae 2110 species 0 36 Mycoplasma arginini 1 2094 species Entomoplasmatales 38 order 186328 1 0 23 5833 2 3803 1 0 Spiroplasmataceae 24 family 2131 Spiroplasma 23 genus 2132 1 0 115 3801 362837 species 1 Spiroplasma cantharicola 121 0 0 167 216934 species Spiroplasma corruscae 1 species 216944 1 Spiroplasma sabaudiense 162 0 172 0 2144 species 1 Spiroplasma mirum 1 Spiroplasma apis 2137 species 0 96 0 284 216933 species Spiroplasma chrysopicola 1 254 0 2637901 no rank 2 1 Spiroplasma sp. NBRC 100390 species 1914410 127 0 0 127 1 Spiroplasma sp. TU-14 species 1898044 1 Spiroplasma atrichopogonis 1114980 species 177 0 0 108 47834 species Spiroplasma kunkelii 1 species 315358 Spiroplasma eriocheiris 1 346 0 0 266 Spiroplasma culicicola 1 species 216935 183 0 species 216938 1 Spiroplasma helicoides 206 0 216937 species Spiroplasma floricola 1 2136 species 1 Spiroplasma monobiae 0 74 153 0 species 2139 1 Spiroplasma clarkii species 216945 Spiroplasma syrphidicola 1 211 0 0 190 Spiroplasma turonicum 1 216946 species 150 0 1 Spiroplasma diminutum 216936 species 0 123 216942 species 1 Spiroplasma litorale 0 108 2133 species Spiroplasma citri 1 Spiroplasma taiwanense 1 2145 species 0 135 33925 family Entomoplasmataceae 13 0 1 2007 3 46239 genus 8 Mesoplasma 1510 10 0 1 species 225999 1 Mesoplasma syrphidae 297 0 0 184 Mesoplasma chauliocola 1 216427 species 109 0 1 Mesoplasma entomophilum species 2149 158 0 1 Mesoplasma coleopterae species 324078 1 Mesoplasma lactucae species 138853 0 294 1 Mesoplasma tabanidae species 219745 177 0 281 0 1 Mesoplasma florum species 2151 46238 genus 4 494 0 74700 species 1 Entomoplasma freundtii 82 0 species 81459 1 Entomoplasma melaleucae 131 0 0 115 215578 species Entomoplasma somnilux 1 214888 species Entomoplasma luminosum 1 0 166 186329 order 12 0 1878 Acholeplasmataceae 12 2146 family 1 0 2 1878 5 Acholeplasma 2147 genus 34 1467 1 0 species 61635 Acholeplasma brassicae 1 0 353 Acholeplasma palmae 1 38986 species 0 294 1 Acholeplasma laidlawii species 2148 0 328 35623 species Acholeplasma oculi 1 0 458 409 24 0 1 genus 33926 6 Candidatus Phytoplasma 3 85620 species group 203 0 1 Maize bushy stunt phytoplasma species 202462 67 0 1 Onion yellows phytoplasma species 100379 0 90 Aster yellows witches'-broom phytoplasma 1 229545 species 0 46 118 0 1 85632 species group species 59748 Candidatus Phytoplasma australiense 1 0 118 species group 85630 1 0 64 64 0 Candidatus Phytoplasma mali 1 species 37692 1297 phylum 33 7908 0 1 0 44 7908 33 Deinococci class 188787 184 0 3 2762275 order 3 Trueperaceae family 332247 1 0 2 184 332248 genus Truepera 2 0 1 182 1 species 332249 Truepera radiovictrix 1 0 181 Deinococcales 15 order 118964 66 3566 1 0 51 3500 1 0 Deinococcaceae 14 183710 family 1298 genus Deinococcus 13 3449 30 0 1 309887 species 1 Deinococcus maricopensis 0 229 576 0 Deinococcus proteolyticus 1 55148 species 320 0 species 502394 1 Deinococcus gobiensis 68909 species Deinococcus geothermalis 1 225 0 223 0 1 Deinococcus actinosclerus species 1768108 Deinococcus soli Cha et al. 2016 1 species 1309411 257 0 237 0 1299 species Deinococcus radiodurans 1 1182571 species Deinococcus swuensis 1 0 289 0 189 1 2623546 no rank 1 Deinococcus sp. NW-56 species 2080419 189 0 292 0 Deinococcus puniceus 1 species 1182568 266 0 1 Deinococcus deserti 310783 species 316 0 432329 species 1 Deinococcus peraridilitoris 4114 18 0 1 order 68933 Thermales 14 188786 family Thermaceae 13 4096 5 0 1 genus 186191 1 0 191 191 0 1 Marinithermus hydrothermalis 186192 species Thermus 8 genus 270 43 3004 1 0 104 0 1 2619321 no rank 1 Thermus sp. CCB_US3_UF1 species 1111069 104 0 56957 species 1 Thermus oshimai 198 0 0 288 Thermus parvatiensis 1 species 456163 56956 species Thermus brockianus 1 211 0 271 species Thermus aquaticus 1 244 0 Thermus thermophilus 1 274 species 0 759 0 1157 species 37636 Thermus scotoductus 1 65551 genus 2 0 599 Meiothermus silvanus 1 52022 species 272 0 327 0 1 Meiothermus ruber species 277 0 297 1 genus 208447 187137 species 1 Oceanithermus profundus 0 297 0 300 phylum 67819 3 3 1663419 class 0 300 1 300 1 0 Fimbriimonadales 3 1663425 order 1663426 family 2 299 0 2 Fimbriimonas genus 1005038 1 299 1 0 Fimbriimonas ginsengisoli 1 1005039 species 0 298 Chloroflexi 42 200795 phylum 1 0 3 5907 1517 5 0 1 301297 class 8 Dehalococcoidia 1 0 1 527 Dehalogenimonas 3 670486 genus Dehalogenimonas formicexedens 1 species 1839801 309 0 217 0 Dehalogenimonas lykanthroporepellens 1 552810 species 4 order 1202465 0 985 family 1202464 Dehalococcoidaceae 4 0 1 985 1 61434 genus 3 Dehalococcoides 984 1 0 1 61435 species Dehalococcoides mccartyi 1 859 0 237581 no rank 1 124 0 1522671 species 1 Dehalococcoides sp. UCH007 124 0 7 Thermomicrobia class 189775 1 0 11 452 0 1 214 4 order 189776 2 Thermomicrobiales 189777 family 1 210 0 210 0 1 499 genus 0 210 500 species 1 Thermomicrobium roseum 85000 subclass 4 0 227 4 Sphaerobacterales 85001 order 1 227 1 0 0 226 255728 suborder 3 0 1 226 5 family 85002 3 Sphaerobacteraceae 2056 genus 2 Sphaerobacter 221 8 0 1 213 0 1 Sphaerobacter thermophilus species 2057 class 475962 5 Caldilineae 509 2 0 1 order 475963 4 Caldilineales 507 17 0 1 0 1 490 5 family 475964 Caldilineaceae 3 2 Caldilinea 233191 genus 4 485 1 0 0 481 1 Caldilinea aerophila 133453 species 1 0 3 1693 Chloroflexia 10 32061 class Chloroflexales 9 order 32064 3 1690 1 0 0 916 1508594 suborder 4 916 0 4 1106 family 1107 genus Chloroflexus 4 0 1 916 1 2 Chloroflexus aurantiacus species 1108 304 608 1 0 304 0 1 Chloroflexus sp. Y-400-fl 480224 strain 0 307 species 152260 Chloroflexus aggregans 1 0 771 1508595 suborder 4 4 Roseiflexaceae 1508635 family 3 771 1 0 0 1 768 1 120961 genus 3 Roseiflexus 2609473 no rank 1 0 297 1 Roseiflexus sp. RS-1 species 357808 0 297 species 120962 1 Roseiflexus castenholzii 470 0 1 0 7 1106 6 Anaerolineae class 292625 Anaerolineales 5 292629 order 1 0 1 1099 292628 family 4 Anaerolineaceae 0 1 1098 2 0 101 genus 2019482 1 0 101 Brevefilum fermentans 1 species 1986204 425 0 1324991 no rank 1 1 Anaerolineaceae bacterium oral taxon 439 1889813 species 425 0 1 233189 genus 570 0 0 570 Anaerolinea thermophila 1 species 167964 0 1 627 5 class 1382928 Ardenticatenia 5 15 622 1 0 4 Ardenticatenales order 1382929 0 1 607 1 1382930 family Ardenticatenaceae 3 2 Candidatus Promineofilum 1988031 genus 1 606 1 0 Candidatus Promineofilum breve 1 1806508 species 0 605 0 1 10622675 161 phylum 1239 694 Firmicutes class 1676648 5 Limnochordia 361 3 0 1 Limnochordales 4 order 1676649 1 0 4 358 3 Limnochordaceae 1676650 family 1 0 1 354 1 353 1 0 2 Limnochorda 1676651 genus 0 352 Limnochorda pilosa 1 1555112 species 1 0 1 7355 15 Tissierellia 1737404 class 393 7020 1 0 Tissierellales 13 1737405 order family 2042895 1 484 0 1505664 genus 1 0 484 484 0 species 1556 1 Gottschalkia acidurici 0 1 6143 793 1570339 family Peptoniphilaceae 11 0 1 646 1 genus 165779 3 Anaerococcus 1 Anaerococcus prevotii species 33034 361 0 1870984 species Anaerococcus mediterraneensis 1 0 284 1 1161127 genus 2760 0 2760 0 1 Murdochiella vaginalis 1852373 species Peptoniphilus 2 genus 162289 4 551 1 0 no rank 2637196 1 0 547 547 0 1 Peptoniphilus sp. ING2-D1G species 1912856 150022 genus Finegoldia 2 647 1 0 1 species 1260 Finegoldia magna 1 0 646 0 1 746 14 genus 543311 Parvimonas 2 0 732 species 33033 1 Parvimonas micra 334 0 no rank 1737407 1 0 334 1 1582879 genus 1852374 species 1 Ezakiella massiliensis 0 334 1 no rank 84086 0 293 293 0 endosymbiont 'TC1' of Trimyema compressum 1 243899 species 2 no rank 33974 726 0 2 726 1 0 Ndongobacter 2 1930845 genus 1871025 species Ndongobacter massiliensis 1 724 0 10 class 526524 109822 0 526525 order 10 Erysipelotrichales 0 1 109822 20 family 128827 9 Erysipelotrichaceae 109802 89 0 1 Erysipelothrix 3 genus 1647 12 1796 1 0 0 1289 species 1648 1 Erysipelothrix rhusiopathiae species 1514105 Erysipelothrix larvae 1 0 495 0 1 10768 5 genus 191303 2 Turicibacter 10763 0 1 no rank 2638206 0 10763 Turicibacter sp. H121 1 1712675 species 0 96031 1 544447 no rank 1 Erysipelotrichaceae bacterium I46 1834207 species 0 96031 1118 1 0 1 1729679 genus Faecalibaculum 2 0 1117 1702221 species 1 Faecalibaculum rodentium 909932 class Negativicutes 31 263485 27 0 1 0 1 241313 774 order 1843489 Veillonellales 11 family 31977 Veillonellaceae 10 240539 1623 0 1 2 Megasphaera 906 genus 1 0 197 7626 7429 0 species 907 Megasphaera elsdenii 1 Dialister 2 39948 genus 2 6323 1 0 6321 0 39950 species 1 Dialister pneumosintes 29465 genus Veillonella 3 0 1 223983 4 7179 0 248315 species 1 Veillonella rodentium 0 216800 species 29466 1 Veillonella parvula 909928 genus Negativicoccus 2 984 1 0 1 0 983 species 1702287 Negativicoccus massiliensis 1 1 0 129 12356 Acidaminococcales 5 order 1843488 1 0 30 12227 Acidaminococcaceae 4 family 909930 12197 5 0 1 genus 904 Acidaminococcus 3 3436 0 905 species 1 Acidaminococcus fermentans 8756 0 Acidaminococcus intestini 1 species 187327 0 1 9789 54 order 909929 Selenomonadales 14 family 1843490 Sporomusaceae 4 0 1 2195 1 Pelosinus 3 365348 genus 1 2194 1 0 no rank 2629460 1 971 0 0 971 1 Pelosinus sp. UFO1 484770 species 1222 0 Pelosinus fermentans 1 species 365349 9 Selenomonadaceae family 1843491 35 7540 1 0 88 6324 1 0 Selenomonas 6 970 genus 0 2657 species 971 1 Selenomonas ruminantium 3 2637378 no rank 0 2753 713030 species 1 Selenomonas sp. oral taxon 136 1254 0 1884263 species 1 Selenomonas sp. oral taxon 920 574 0 1 Selenomonas sp. oral taxon 478 712538 species 0 925 Selenomonas sputigena 1 species 69823 826 0 2 1181 1 0 Megamonas 2 genus 158846 0 1179 Megamonas hypermegale 1 species 158847 108 9584314 1 0 Clostridia 207 class 186801 4 2309 1 0 10 Halanaerobiales order 53433 family 972 5 Halanaerobiaceae 1511 12 0 1 1 0 13 1001 Halanaerobium 3 genus 2330 0 733 Halanaerobium praevalens 1 species 2331 656519 species Halanaerobium hydrogeniformans 1 0 255 1 genus 32636 498 0 31909 species Halothermothrix orenii 1 0 498 53434 family 4 Halobacteroidaceae 0 1 794 1 Halobacteroides 2 genus 42417 2 472 1 0 0 470 species 42422 1 Halobacteroides halobius 1 genus 28186 321 0 0 321 Acetohalobium arabaticum 1 species 28187 2770089 order 3 0 1228 2770092 family 1 0 562 562 0 1 499228 genus 1 Tepidanaerobacter acetatoxydans 499229 species 562 0 666 0 2 2770093 family 2 Thermosediminibacter genus 291988 8 666 1 0 1 Thermosediminibacter oceani 291990 species 658 0 34 Thermoanaerobacterales 68295 order 1 0 7 10885 family 543371 13 Thermoanaerobacterales Family III. Incertae Sedis 0 1 5039 35 1 0 26 1092 3 Thermoanaerobacterium 28895 genus 0 430 Thermoanaerobacterium xylanolyticum 1 species 29329 species 1517 1 Thermoanaerobacterium thermosaccharolyticum 0 636 0 1 3912 57 44000 genus 9 Caldicellulosiruptor Caldicellulosiruptor hydrothermalis 1 species 413888 0 477 363 0 Caldicellulosiruptor lactoaceticus 1 52766 species 0 516 44001 species Caldicellulosiruptor saccharolyticus 1 445 0 31899 species 1 Caldicellulosiruptor bescii Caldicellulosiruptor owensensis 1 55205 species 669 0 52765 species 1 Caldicellulosiruptor kristjanssonii 403 0 species 413889 1 Caldicellulosiruptor kronotskyensis 604 0 717609 species 1 Caldicellulosiruptor obsidiansis 378 0 543372 family 1 0 613 genus 252965 1 0 613 0 613 species 252966 1 Mahella australiensis 18 Thermoanaerobacteraceae 186814 family 8 4788 1 0 162 2822 1 0 9 Thermoanaerobacter 1754 genus 46354 species Thermoanaerobacter wiegelii 1 0 356 2325 species Thermoanaerobacter kivui 1 0 248 Thermoanaerobacter italicus 1 species 108150 0 291 0 332 Thermoanaerobacter pseudethanolicus 1 496866 species 0 726 2 2636821 no rank species 399726 Thermoanaerobacter sp. X514 1 0 411 1 Thermoanaerobacter sp. X513 species 573062 0 315 0 332 29323 species Thermoanaerobacter brockii 1 375 0 1 Thermoanaerobacter mathranii 583357 species 129957 genus 1 408 0 129958 species Carboxydothermus hydrogenoformans 1 408 0 0 576 42857 no rank 3 1 genus 42837 136 0 1 Ammonifex degensii 42838 species 0 136 440 1 0 1 genus 44260 2 Moorella 1 Moorella thermoacetica species 1525 0 439 249529 genus Caldanaerobacter 2 0 1 491 7 species 911092 Caldanaerobacter subterraneus 1 0 484 1 0 1 483 2 Thermacetogenium genus 140458 1 Thermacetogenium phaeum 85874 species 482 0 0 438 1 227387 family 0 438 1 genus 227388 species 184064 1 Thermodesulfobium narugense 0 438 157 Clostridiales order 186802 9492 9569141 1 0 18465 0 2304686 family 11 2812 0 3 2304692 genus 288965 species 1 [Clostridium] clariflavum 970 0 1 Herbivorax saccincola 1677857 species 716 0 1 Ruminiclostridium thermocellum species 1515 0 1126 2304691 genus 1 0 1212 0 1212 1510 species 1 [Clostridium] stercorarium 1 2305130 no rank 0 10148 10148 0 species 1834198 1 Ruminiclostridium sp. KB18 genus 236752 1 0 187 187 0 236753 species Fastidiosipila sanguinis 1 2 Ruminiclostridium genus 1508657 1 0 38 1741 1 [Clostridium] cellulolyticum species 1521 1703 0 1637257 genus 2 Mageeibacillus 0 1 875 2 0 873 Mageeibacillus indolicus 1 species 884684 0 1490 2304693 genus 1 0 1490 [Clostridium] thermosuccinogenes 1 species 84032 3 Oscillospiraceae 216572 family 2 5041 1 0 genus 459786 2 Oscillibacter 0 1 5039 7 Oscillibacter valericigenes 1 351091 species 0 5032 family 186806 4 Eubacteriaceae 16751 4 0 1 1063 0 33951 genus 1 Acetobacterium woodii 1 species 33952 0 1063 2 Eubacterium genus 1730 1 0 192 15684 0 15492 1 Eubacterium limosum species 1736 230 327858 1 0 Ruminococcaceae 13 family 541000 6 3902 1 0 Ruminococcus 3 genus 1263 0 1520 species 1264 Ruminococcus albus 1 0 2376 1160721 species 1 Ruminococcus bicirculans 0 1 1628 28 genus 253238 2 Ethanoligenens 1600 0 species 253239 1 Ethanoligenens harbinense 1 Herbivorax 1890281 genus 0 1 0 1 242979 20 946234 genus 2 Flavonifractor 0 242959 292800 species 1 Flavonifractor plautii 552397 no rank 1 0 792 species 29343 1 [Clostridium] cellulosi 0 792 0 1752 2305133 no rank 1 0 1752 species 1572656 1 Ruminococcaceae bacterium CPB6 genus 216851 2 Faecalibacterium 76574 353 0 1 Faecalibacterium prausnitzii 1 853 species 0 76221 490 0 543349 family 1 490 0 1 2733 genus species 2734 Symbiobacterium thermophilum 1 490 0 12385 14 0 1 family 990719 3 Christensenellaceae 1 0 139 12371 Christensenella 2 990721 genus 12232 0 1805714 species Christensenella massiliensis 1 41 Clostridiaceae 31979 family 1 0 140 58063 312 53659 1 0 Clostridium 30 1485 genus Clostridium sporogenes 1 1509 species 0 1106 Clostridium baratii 1 1561 species 0 1660 0 1570 169679 species Clostridium saccharobutylicum 1 0 804 species 394958 Clostridium taeniosporum 1 744 0 species 84022 Clostridium aceticum 1 1 Clostridium estertheticum species 238834 0 784 1 Clostridium argentinense 29341 species 0 1146 498 0 1 Clostridium tyrobutyricum species 1519 2 2614128 no rank 0 10063 Clostridium sp. BNL1100 1 species 755731 0 1914 8149 0 1 Clostridium sp. SY8519 1042156 species 0 1132 217159 species Clostridium carboxidivorans 1 species 1548 1 Clostridium scatologenes 1204 0 1 Clostridium beijerinckii species 1520 0 2128 1670 0 1501 species Clostridium pasteurianum 1 663 0 46867 species Clostridium chauvoei 1 0 2412 species 36745 1 Clostridium saccharoperbutylacetonicum 0 1815 1502 species 1 Clostridium perfringens 1 Clostridium kluyveri 1534 species 2631 0 1 Clostridium formicaceticum 1497 species 711 0 6075 0 1 Clostridium butyricum 1492 species 516 0 1 Clostridium cochlearium species 1494 1520 0 Clostridium cellulovorans 1 1493 species 1874 0 Clostridium tetani 1 1513 species 0 1066 species 1216932 Clostridium bornimense 1 0 843 Clostridium ljungdahlii 1 species 1538 species 1542 1 Clostridium novyi 0 590 0 6576 1491 species 1 Clostridium botulinum 84023 species 1 Clostridium autoethanogenum 0 849 Clostridium acetobutylicum 1 species 1488 697 0 1 0 5 1705 2 Geosporobacter genus 390805 Geosporobacter ferrireducens 1 1424294 species 1700 0 0 70 genus 1981033 Mordavella 1 114627 genus Alkaliphilus 3 0 1 1639 3 0 829 species 461876 1 Alkaliphilus oremlandii species 208226 1 Alkaliphilus metalliredigens 0 807 1 850 1 0 Candidatus Arthromitus 4 genus 49082 0 849 3 no rank 2638829 0 287 1 Candidatus Arthromitus sp. SFB-rat-Yit 1041504 species 49118 species Candidatus Arthromitus sp. SFB-mouse 1 309 0 1 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 species 253 0 68298 family 4 Syntrophomonadaceae 1115 3 0 1 0 402 862 genus 1 863 species Syntrophomonas wolfei 1 0 402 genus 129001 2 Syntrophothermus 0 1 710 1 86170 species 1 Syntrophothermus lipocalidus 0 709 10 538999 no rank 50192 0 13 3529 1 0 Clostridiales Family XIII. Incertae Sedis 4 family 543314 Mogibacterium 2 86331 genus 1 2212 1 0 species 114527 Mogibacterium diversum 1 2211 0 0 1304 [Eubacterium] sulci 1 species 143393 27933 0 2717089 genus 1 2086584 species Mordavella sp. Marseille-P3756 1 0 27933 Clostridiales Family XVII. Incertae Sedis 3 family 539000 4 432 1 0 73918 genus 2 Thermaerobacter 0 1 428 3 1 Thermaerobacter marianensis species 73919 0 425 Intestinimonas 2 genus 1392389 116 18298 1 0 1 Intestinimonas butyriciproducens 1297617 species 0 18182 28 Peptococcaceae family 186807 17 16886 1 0 0 1 373 10 471826 genus Candidatus Desulforudis 2 363 0 471827 species Candidatus Desulforudis audaxviator 1 749 2 0 1 genus 278993 2 Thermincola 0 747 Thermincola potens 1 863643 species 0 861 1 51196 genus 0 861 Syntrophobotulus glycolicus 1 species 51197 Desulfotomaculum 5 genus 1562 41 2631 1 0 1833852 species 1 Desulfotomaculum ferrireducens 621 0 0 544 1 Desulfotomaculum reducens 59610 species 0 407 species 1565 Desulfotomaculum nigrificans 1 Desulfotomaculum ruminis 1 1564 species 1018 0 1135 1 0 1 genus 51514 Dehalobacterium 2 1134 0 species 51515 1 Dehalobacterium formicoaceticum 2282740 genus 1 0 658 102134 species Desulfotomaculum gibsoniae 1 0 658 0 1 4078 24 genus 36853 Desulfitobacterium 5 820 0 Desulfitobacterium dehalogenans 1 36854 species Desulfitobacterium metallireducens 1 142877 species 380 0 Desulfitobacterium dichloroeliminans 1 species 233055 1268 0 species 49338 Desulfitobacterium hafniense 1 1586 0 4 Desulfosporosinus 79206 genus 1 0 4 2616 Desulfosporosinus meridiei 1 species 79209 672 0 0 1004 species 1563 1 Desulfosporosinus orientis 0 936 species 885581 1 Desulfosporosinus acidiphilus 0 1 2821 41 56112 genus Dehalobacter 4 2091 0 2635733 no rank 2 Dehalobacter sp. DCA 1 species 1147129 1040 0 1051 0 species 1131462 1 Dehalobacter sp. CF 0 689 1 Dehalobacter restrictus species 55583 0 947 1 2282742 genus 947 0 Desulfotomaculum acetoxidans 1 58138 species Peptostreptococcaceae 10 186804 family 1 0 459 106644 0 1 751 2 1481960 genus 2 Peptoclostridium 749 0 1 Peptoclostridium acidaminophilum species 1731 Filifactor 2 genus 44259 1 693 1 0 692 0 species 143361 Filifactor alocis 1 415 0 1 genus 186831 415 0 1511 species 1 Acetoanaerobium sticklandii 663 0 no rank 1411023 1 1 Peptostreptococcaceae bacterium oral taxon 929 2081703 species 0 663 1870884 genus 2 Clostridioides 101794 214 0 1 1496 species 1 Clostridioides difficile 101580 0 0 1869 1 genus 1849828 0 1869 Paeniclostridium sordellii 1 1505 species 31984 family 3 Heliobacteriaceae 0 1 651 1 Heliobacterium 2 genus 2697 2 650 1 0 Heliobacterium modesticaldum 1 35701 species 648 0 8945108 870 0 1 family 186803 25 Lachnospiraceae 7163288 0 1 2719313 genus [Clostridium] bolteae 1 species 208479 7163288 0 3926 0 1663717 genus 1 species 1679721 1 Herbinix luporum 0 3926 2 186928 no rank 0 46033 0 10227 species 712991 Lachnospiraceae bacterium oral taxon 500 1 [Eubacterium] rectale 1 39491 species 0 35806 genus 2719231 1 31999 0 31999 0 species 84030 [Clostridium] saccharolyticum 1 genus 207244 2 Anaerostipes 57264 160 0 1 57104 0 1 Anaerostipes hadrus species 649756 46 87880 1 0 Blautia 3 572511 genus 0 48046 Blautia hansenii 1 species 1322 39788 0 1 2648079 no rank 1796616 species 1 Blautia sp. YL58 0 39788 genus 2039240 Anaerotignum 2 1778 2 0 1 species 28446 1 Anaerotignum propionicum 1776 0 2569097 genus 1 35007 0 [Eubacterium] hallii 1 species 39488 0 35007 0 1 10682 84 genus 830 Butyrivibrio 3 5157 0 1 Butyrivibrio proteoclasticus 43305 species 5441 0 Butyrivibrio hungatei 1 185008 species 1 0 9 140455 2 Roseburia genus 841 301301 species 1 Roseburia hominis 140446 0 0 11275 28050 genus 1 species 39485 1 [Eubacterium] eligens 0 11275 1353064 295 0 1 1506553 genus 4 Lachnoclostridium 0 5037 species 66219 1 Lachnoclostridium phytofermentans Lachnoclostridium phocaeense 1 1871021 species 52326 0 no rank 2608895 1 0 1295406 species 1834196 Lachnoclostridium sp. YL32 1 1295406 0 1587 0 1 698776 genus 1587 0 species 29360 1 Cellulosilyticum lentocellum 643 0 2 485256 order 2 485255 family 643 0 643 3 0 1 375928 genus 2 Natranaerobius 375929 species Natranaerobius thermophilus 1 0 640 Bacilli 422 91061 class 1 0 863 656158 order 186826 160 Lactobacillales 0 1 483907 3307 7 3522 1 0 Leuconostocaceae 17 family 81850 genus 1243 9 Leuconostoc 0 1 2152 7 1 Leuconostoc mesenteroides 1245 species 0 574 0 272 1 Leuconostoc kimchii 136609 species 158 0 Leuconostoc carnosum 1 species 1252 no rank 2685106 1 218 0 species 979982 Leuconostoc sp. C2 1 0 218 1 Leuconostoc lactis 1246 species 0 96 0 208 1 Leuconostoc citreum species 33964 0 144 species 255248 1 Leuconostoc garlicum 0 475 1 Leuconostoc gelidum species 1244 1 1099 1 0 6 Weissella 46255 genus Weissella paramesenteroides 1 1249 species 0 197 165096 species 1 Weissella koreensis 175 0 137591 species 1 Weissella cibaria 164 0 0 297 species 1631871 1 Weissella jogaejeotgali 265 0 species 759620 Weissella ceti 1 0 264 genus 46254 1 1247 species 1 Oenococcus oeni 264 0 186828 family Carnobacteriaceae 10 0 1 3058 2 686 0 genus 1470540 2 0 331 species 708126 1 Jeotgalibaca dankookensis 1 2621505 no rank 0 355 355 0 1903686 species Jeotgalibaca sp. PTS2502 1 Carnobacterium 5 2747 genus 1 0 10 1848 1032 0 no rank 257487 2 645 0 208596 species Carnobacterium sp. 17-4 1 Carnobacterium sp. CP1 1 species 1564681 0 387 147709 species 1 Carnobacterium inhibens 321 0 0 485 species 2751 1 Carnobacterium maltaromaticum 1 522 1 0 2 Marinilactibacillus genus 191769 0 521 no rank 2632303 1 0 521 1 Marinilactibacillus sp. 15R species 1911586 0 293 no rank 263855 1 1 Lactobacillales bacterium 1993866 species 293 0 1300 family Streptococcaceae 49 0 1 402611 1788 1 0 3 3550 Lactococcus 5 1357 genus Lactococcus garvieae 1 species 1363 687 0 1358 species Lactococcus lactis 1 2015 0 1366 species 1 Lactococcus raffinolactis 0 434 1364 species Lactococcus piscium 1 0 411 43 Streptococcus 1301 genus 1 0 7692 397273 0 2350 Streptococcus pyogenes 1 species 1314 0 309 Streptococcus marmotae 1 species 1825069 1017 0 1 Streptococcus parauberis species 1348 914 0 1 Streptococcus pseudopneumoniae 257758 species 1 Streptococcus mutans 1309 species 1596 0 species 1814128 1 Streptococcus halotolerans 230 0 6489 0 1308 species Streptococcus thermophilus 1 0 73061 2608887 no rank 7 400 0 species 1319 Streptococcus sp. 'group B' 1 Streptococcus sp. I-P16 1 species 1156433 13484 0 species 1839799 Streptococcus sp. FDAARGOS_192 1 0 30852 0 10675 1759399 species 1 Streptococcus sp. A12 0 870 1 Streptococcus sp. NPS 308 species 1902136 Streptococcus sp. oral taxon 431 1 712633 species 3728 0 0 13052 1 Streptococcus sp. I-G2 species 1156431 102684 species 1 Streptococcus infantarius 0 1124 0 3578 1303 species Streptococcus oralis 1 2099 0 species 1305 Streptococcus sanguinis 1 species 315405 Streptococcus gallolyticus 1 0 1889 301 0 1 Streptococcus pluranimalium species 82348 species 1335 1 Streptococcus equinus 16658 0 0 408 Streptococcus merionis 1 400065 species 59310 species Streptococcus macedonicus 1 422 0 97787 0 1 Streptococcus parasanguinis 1318 species 1 Streptococcus acidominimus 1326 species 2596 0 607 0 species 1346 Streptococcus iniae 1 1 Streptococcus agalactiae 1311 species 5140 0 Streptococcus pantholopis 1 species 1811193 0 399 1 Streptococcus mitis species 28037 4055 0 1304 species 1 Streptococcus salivarius 126018 0 3 671232 species group 15860 0 76860 species 1 Streptococcus constellatus 3566 0 Streptococcus intermedius 1 1338 species 0 2079 10215 0 species 1328 Streptococcus anginosus 1 1 Streptococcus uberis species 1349 0 448 0 1477 119603 species group 2 0 863 1336 species 1 Streptococcus equi species 1334 1 Streptococcus dysgalactiae 0 614 species 150055 Streptococcus lutetiensis 1 0 942 0 2644 Streptococcus pneumoniae 1 species 1313 1 Streptococcus gordonii 1302 species 0 3264 0 294 species 1888195 1 Streptococcus himalayensis Streptococcus cristatus 1 45634 species 0 1476 2356 0 1 Streptococcus pasteurianus species 197614 11773 0 1 Streptococcus suis species 1307 Lactobacillaceae 57 33958 family 1 0 285 35239 1 2767892 genus 0 262 262 0 Lactobacillus paracollinoides 1 240427 species 3 2767842 genus 1078 0 234 0 1 Lactobacillus pentosus 1589 species 0 645 species 1590 Lactobacillus plantarum 1 Lactobacillus paraplantarum 1 species 60520 0 199 3 2759736 genus 0 1833 Lactobacillus paracasei 1 species 1597 0 600 714 0 1 Lactobacillus casei species 1582 0 519 47715 species 1 Lactobacillus rhamnosus 661 0 2767889 genus 2 375175 species Lactobacillus backii 1 0 211 1610 species 1 Lactobacillus coryniformis 0 450 1 2767877 genus 105 0 105 0 148814 species Lactobacillus kunkeei 1 genus 2767890 1 128 0 128 0 1 Lactobacillus hokkaidonensis species 1193095 6 2767879 genus 1870 0 0 294 1602 species Lactobacillus alimentarius 1 1007676 species 1 Lactobacillus ginsenosidimutans 355 0 241 0 Lactobacillus crustorum 1 392416 species species 1074467 Lactobacillus heilongjiangensis 1 0 386 species 1847728 Lactobacillus allii 1 323 0 1612 species Lactobacillus farciminis 1 0 271 genus 2767885 2 0 1095 466 0 species 1599 Lactobacillus sakei 1 Lactobacillus curvatus 1 species 28038 0 629 616 0 2767893 genus 3 236 0 1 Lactobacillus curieae species 1138822 species 152331 1 Lactobacillus parabuchneri 0 152 Lactobacillus buchneri 1 1581 species 0 228 1861 0 5 1253 genus 0 601 1 Pediococcus pentosaceus species 1255 229 0 1 Pediococcus claussenii 187452 species 0 248 114090 species 1 Pediococcus inopinatus 489 0 1670797 species group 1 1 Pediococcus acidilactici 1254 species 0 489 294 0 51663 species 1 Pediococcus damnosus genus 2742598 3 0 1941 0 351 species 1613 1 Lactobacillus fermentum 504 0 species 1598 Lactobacillus reuteri 1 1 Lactobacillus mucosae species 97478 1086 0 0 419 2767881 genus 2 1 Lactobacillus sanfranciscensis 1625 species 0 162 1 Lactobacillus lindneri 53444 species 0 257 814 0 3 2767886 genus 0 147 637971 species Lactobacillus koreensis 1 1 Lactobacillus zymae species 267363 243 0 424 0 species 1580 Lactobacillus brevis 1 16 Lactobacillus genus 1578 1 0 3200 17910 1 Lactobacillus delbrueckii 1584 species 0 972 1559 0 1 Lactobacillus johnsonii species 33959 8856 0 1604 species Lactobacillus amylovorus 1 0 190 1 Lactobacillus acetotolerans 1600 species Lactobacillus gasseri 1 1596 species 630 0 1587 species Lactobacillus helveticus 1 0 498 304 0 1 Lactobacillus amylolyticus species 83683 species 267818 Lactobacillus kefiranofaciens 1 0 280 1 Lactobacillus acidophilus 1579 species 212 0 225 0 1 Lactobacillus gallinarum 52242 species 4 2620435 no rank 807 0 species 1545702 1 Lactobacillus sp. wkB8 0 229 Lactobacillus sp. D1501 1 2108362 species 0 172 0 208 1 Lactobacillus sp. CBA3605 species 2099788 species 2099789 Lactobacillus sp. CBA3606 1 198 0 177 0 109790 species 1 Lactobacillus jensenii 0 1363 2767876 genus 1 species 1603 1 Lactobacillus amylophilus 0 1363 2767887 genus 4 2998 0 species 1623 Lactobacillus ruminis 1 764 0 1617 0 1 Lactobacillus salivarius 1624 species Lactobacillus acidipiscis 1 species 89059 246 0 1 Lactobacillus agilis species 1601 0 371 1 0 4 2305 8 Aerococcaceae family 186827 0 1 2301 28 genus 1375 Aerococcus 7 0 309 128944 species Aerococcus urinaehominis 1 0 271 1 Aerococcus sanguinicola 119206 species Aerococcus christensenii 1 87541 species 326 0 species 1376 Aerococcus urinae 1 399 0 1 Aerococcus urinaeequi species 51665 625 0 0 343 1377 species Aerococcus viridans 1 1 0 91 33572 Enterococcaceae 17 family 81852 0 987 2737 genus 2 0 425 species 633807 1 Vagococcus penaei 0 562 1 Vagococcus teuberi 519472 species 0 890 1 51668 genus 0 890 51669 species Tetragenococcus halophilus 1 genus 1350 Enterococcus 12 31206 4293 0 1 0 1937 3 no rank 2608891 1 Enterococcus sp. FDAARGOS_163 species 2060306 0 562 0 561 2057791 species 1 Enterococcus sp. CR-Ec1 0 814 Enterococcus sp. FDAARGOS_375 1 species 2060307 15970 0 Enterococcus faecium 1 species 1352 0 2691 Enterococcus durans 1 53345 species 1 Enterococcus wangshanyuanii 2005703 species 0 525 437 0 417368 species 1 Enterococcus thailandicus 3646 0 Enterococcus faecalis 1 1351 species Enterococcus mundtii 1 species 53346 0 574 37734 species Enterococcus casseliflavus 1 0 533 1354 species Enterococcus hirae 1 0 600 1 genus 33969 0 398 0 398 1 Melissococcus plutonius species 33970 0 1 171388 648 1385 order 261 Bacillales 495 1 0 1 186824 family Thermoactinomycetaceae 4 0 4 Laceyella 1 genus 292635 1 0 11 490 Novibacillus 2 genus 1677050 0 479 1471761 species 1 Novibacillus thermophilus 0 1 9923 32 186818 family Planococcaceae 27 2 Rummeliibacillus 648802 genus 1 0 2 284 Rummeliibacillus stabekisii 1 241244 species 0 282 1 0 7 2413 5 Sporosarcina 1569 genus 2 no rank 2647733 0 812 0 464 Sporosarcina sp. P33 1 species 1930764 1 Sporosarcina sp. P37 1930546 species 0 348 species 1571 Sporosarcina ureae 1 1234 0 Sporosarcina psychrophila 1 1476 species 0 360 571 5 0 1 157226 genus 2 Jeotgalibacillus Jeotgalibacillus malaysiensis 1 1508404 species 0 566 1 1557 1 0 Solibacillus 3 genus 648800 771 0 1 2637870 no rank species 2048654 Solibacillus sp. R5-41 1 771 0 1 Solibacillus silvestris 76853 species 785 0 Planococcus 12 genus 1372 58 4489 1 0 260 0 1 Planococcus sp. L10.15 species 1302659 0 272 1 Planococcus antarcticus species 161360 0 737 no rank 2662419 2 527 0 1 Planococcus sp. MB-3u-03 2058136 species Planococcus sp. PAMC 21323 1 1526927 species 0 210 584 0 1038856 species Planococcus plakortidis 1 0 319 1 Planococcus kocurii species 1374 Planococcus donghaensis 1 414778 species 0 314 1 Planococcus halocryophilus 1215089 species 279 0 0 336 Planococcus faecalis 1 species 1598147 Planococcus rifietoensis 1 species 200991 0 408 922 0 1 Planococcus maritimus species 192421 2 Kurthia 1649 genus 1 0 1 577 576 0 no rank 2644826 1 576 0 Kurthia sp. 11kri321 1 species 1750719 8 no rank 539002 2402 0 no rank 539738 1 597 0 genus 1378 1 0 597 no rank 2624949 1 0 597 597 0 1 Gemella sp. oral taxon 928 species 1785995 7 no rank 539742 0 1805 51 1805 1 0 Exiguobacterium 7 33986 genus 4 no rank 2644629 1017 0 Exiguobacterium sp. AT1b 1 360911 species 0 252 240 0 1224749 species Exiguobacterium sp. ZWU0009 1 0 246 1849031 species 1 Exiguobacterium sp. U13-1 Exiguobacterium sp. MH3 1 1399115 species 279 0 332410 species Exiguobacterium sibiricum 1 0 472 0 265 132920 species Exiguobacterium antarcticum 1 186822 family Paenibacillaceae 46 0 1 50796 89 76632 genus 2 Thermobacillus 947 1 0 1 0 946 Thermobacillus composti 1 377615 species 3 no rank 85151 1148 0 1 0 1 1148 Aneurinibacillus 3 genus 55079 604 0 2642329 no rank 1 0 604 1450761 species Aneurinibacillus sp. XH2 1 species 1500254 1 Aneurinibacillus soli 0 543 2353 12 0 1 genus 55080 Brevibacillus 4 919 0 species 1393 1 Brevibacillus brevis Brevibacillus laterosporus 1 species 1465 785 0 Brevibacillus formosus 1 54913 species 0 637 36 Paenibacillus genus 44249 1 0 270 46259 0 594 1178515 species Paenibacillus swuensis 1 0 854 species 159743 1 Paenibacillus terrae species 1616788 1 Paenibacillus bovis 1200 0 528191 species Paenibacillus xylanexedens 1 1155 0 907 0 species 1464 Paenibacillus larvae 1 0 1010 Paenibacillus yonginensis 1 species 1462996 0 2032 Paenibacillus donghaensis 1 species 414771 1 Paenibacillus odorifer species 189426 0 837 species 44251 1 Paenibacillus durus 1733 0 0 811 1126833 species 1 Paenibacillus beijingensis 0 1822 1 species group 2044880 Paenibacillus riograndensis 1 species 483937 0 1822 0 611 1763538 species Paenibacillus crassostreae 1 910 0 Paenibacillus peoriae 1 59893 species 1960 0 160799 species Paenibacillus borealis 1 0 4468 1406 species Paenibacillus polymyxa 1 989 0 species 169760 1 Paenibacillus stellifer species 162209 1 Paenibacillus naphthalenovorans 826 0 0 1283 1 Paenibacillus ihbetae species 1870820 16792 0 13 no rank 185978 1 Paenibacillus sp. BIHB4019 species 1870819 903 0 1566358 species Paenibacillus sp. IHBB 10380 1 561 0 1 Paenibacillus sp. FSL H7-0357 1536774 species 1821 0 1 Paenibacillus sp. FSL P4-0081 species 1536769 2187 0 1 Paenibacillus sp. 32O-W species 1695218 774 0 1 Paenibacillus sp. JDR-2 species 324057 1593 0 0 1425 1536772 species Paenibacillus sp. FSL R7-0273 1 1536773 species Paenibacillus sp. FSL R7-0331 1 0 1448 0 903 2069255 species 1 Paenibacillus sp. lzh-N1 Paenibacillus sp. FSL R5-0912 1 species 1536771 0 1976 0 1049 1 Paenibacillus sp. FSL H7-0737 1536775 species species 481743 Paenibacillus sp. Y412MC10 1 1011 0 1141 0 species 1536770 1 Paenibacillus sp. FSL R5-0345 Paenibacillus sabinae 1 species 365617 0 975 1 Paenibacillus graminis species 189425 0 1951 0 771 Paenibacillus kribbensis 1 species 172713 61624 species Paenibacillus mucilaginosus 1 0 1498 551 4 0 1 186821 family 2 Sporolactobacillaceae no rank 663587 1 0 547 85683 species 1 [Bacillus] selenitireducens 0 547 0 1 77619 211 family 186817 Bacillaceae 115 Lentibacillus 2 175304 genus 1 0 1 560 1472767 species Lentibacillus amyloliquefaciens 1 0 559 2675234 genus 5 0 1944 86665 species 1 Bacillus halodurans 322 0 1 Bacillus lehensis 300825 species 379 0 species 79885 Bacillus pseudofirmus 1 0 349 1 Bacillus krulwichiae species 199441 471 0 1 Bacillus clausii species 79880 423 0 1 0 56 2909 7 Virgibacillus genus 84406 361 0 1 Virgibacillus halodenitrificans species 1482 469 0 species 163877 1 Virgibacillus necropolis 982 0 2 2620237 no rank 0 549 1 Virgibacillus sp. 6R species 1911587 433 0 1 Virgibacillus sp. SK37 403957 species 0 567 1 Virgibacillus phasianinus species 2017483 0 474 Virgibacillus pantothenticus 1 species 1473 2 45667 genus 0 867 1 Halobacillus mangrovi species 402384 0 598 269 0 1 Halobacillus halophilus 1570 species genus 1329200 3 Fictibacillus 0 1 1074 3 species 255247 1 Fictibacillus arsenicus 525 0 0 546 1 Fictibacillus phosphorivorans 1221500 species 0 372 1055323 genus 1 372 0 species 33936 1 Aeribacillus pallidus 0 355 1 genus 1906945 1 Parageobacillus thermoglucosidasius species 1426 355 0 182709 genus 1 1019 0 Oceanobacillus iheyensis 1 species 182710 1019 0 459532 genus 1 0 700 species 586416 Terribacillus aidingensis 1 700 0 0 1 4847 295 genus 129337 15 Geobacillus no rank 2642459 6 0 1358 373 0 Geobacillus sp. WCH70 1 471223 species 0 128 1233873 species Geobacillus sp. GHH01 1 Geobacillus sp. Y412MC61 1 species 544556 114 0 0 388 species 581103 1 Geobacillus sp. Y4.1MC1 217 0 Geobacillus sp. C56-T3 1 691437 species 0 138 species 550542 1 Geobacillus sp. Y412MC52 4 1505648 species group 1422 0 1 Geobacillus thermoleovorans 33941 species 558 0 0 248 Geobacillus thermocatenulatus 1 33938 species 0 162 1462 species 1 Geobacillus kaustophilus species 169283 Geobacillus lituanicus 1 454 0 0 351 species 129338 1 Geobacillus subterraneus 1 Geobacillus thermodenitrificans 33940 species 459 0 1 Geobacillus stearothermophilus 1422 species 0 645 0 317 species 1921421 1 Geobacillus genomosp. 3 1 0 31 2111 6 Anoxybacillus genus 150247 1 Anoxybacillus amylolyticus species 294699 0 337 0 542 33934 species Anoxybacillus flavithermus 1 288 0 Anoxybacillus gonensis 1 species 198467 2639704 no rank 2 913 0 species 1490052 Anoxybacillus sp. B2M1 1 0 541 1490057 species 1 Anoxybacillus sp. B7M1 0 372 36 2687 1 0 Lysinibacillus 5 genus 400634 1 Lysinibacillus fusiformis 28031 species 373 0 1145276 species 1 Lysinibacillus varians 0 475 0 1298 species 1421 Lysinibacillus sphaericus 1 0 505 1 no rank 2636778 505 0 2072025 species Lysinibacillus sp. YS11 1 genus 29331 2 Amphibacillus 381 3 0 1 1449 species 1 Amphibacillus xylanus 378 0 1 351195 genus 0 485 species 1230341 Salimicrobium jeotgali 1 0 485 1674 0 genus 2675229 2 0 862 1478 species 1 Bacillus simplex 812 0 Bacillus muralis 1 264697 species 2675230 genus 2 1278 0 883 0 665099 species 1 Bacillus oceanisediminis 0 395 1 Bacillus kochii species 859143 0 1 54145 4256 genus 1386 58 Bacillus species 561879 1 Bacillus safensis 882 0 482 0 1 1792192 species group 1 Bacillus altitudinis species 293387 0 482 7053 0 19 185979 no rank 1856406 species Bacillus sp. H15-1 1 629 0 0 416 1446792 species 1 Bacillus sp. Pc3 0 447 1 Bacillus sp. 275 species 1941347 0 102 species 1409 Bacillus sp. (in: Bacteria) 1 169 0 species 1570330 1 Bacillus sp. BH072 species 2026248 Bacillus sp. 1s-1 1 629 0 species 563169 Bacillus sp. SJ-10 1 384 0 0 194 species 2009331 1 Bacillus sp. MD-5 species 1774743 1 Bacillus sp. SDLI1 422 0 species 1837130 1 Bacillus sp. FJAT-14266 0 523 0 449 756828 species 1 Bacillus sp. WP8 0 564 species 1565991 Bacillus sp. X1(2014) 1 0 415 98228 species Bacillus sp. OxB-1 1 0 527 1 Bacillus sp. 1NLA3E species 666686 1 Bacillus sp. LM 4-2 species 1628753 0 132 1 Bacillus sp. JS 1127744 species 0 220 Bacillus sp. IHB B 7164 1 1827146 species 0 544 98 0 Bacillus sp. Lzh-5 1 2049935 species 1574141 species Bacillus sp. YP1 1 189 0 0 563 632773 species 1 Bacillus beveridgei 0 559 1 Bacillus methanolicus species 1471 0 793 324767 species 1 Bacillus infantis 531 0 33932 species Bacillus cohnii 1 1479 species Bacillus smithii 1 0 472 1810 0 species 1398 1 Bacillus coagulans species 135735 Bacillus endophyticus 1 1537 0 Bacillus cellulosilyticus 1 1413 species 726 0 0 485 Bacillus xiamenensis 1 species 1178537 549 0 species 79883 1 Bacillus horikoshii 0 11599 species group 653685 9 1002 0 Bacillus licheniformis 1 species 1402 0 902 1648923 species 1 Bacillus paralicheniformis 962 0 1452 species Bacillus atrophaeus 1 species subgroup 1938374 3 0 3180 659243 species 1 Bacillus siamensis 0 415 1 Bacillus amyloliquefaciens species 1390 1582 0 1 Bacillus velezensis 492670 species 1183 0 0 687 Bacillus sonorensis 1 119858 species 85 0 Bacillus vallismortis 1 species 72361 0 4781 1423 species 1 Bacillus subtilis species 1547283 1 Bacillus weihaiensis 453 0 Bacillus gibsonii 1 species 79881 145 0 1 Bacillus pumilus 1408 species 2059 0 467 0 species 412384 1 Bacillus aryabhattai 400 0 86664 species 1 Bacillus flexus 1 Bacillus megaterium 1404 species 0 1412 15951 0 10 species group 86661 Bacillus bombysepticus 1 species 658666 502 0 580165 species 1 Bacillus cytotoxicus 521 0 4953 0 species 1396 1 Bacillus cereus 1 Bacillus anthracis species 1392 0 336 0 342 155322 species Bacillus toyonensis 1 3 no rank 2750818 1867 0 1 Bacillus sp. FDAARGOS_235 1839798 species 659 0 1 Bacillus sp. HBCD-sjtu species 2053832 0 970 238 0 1 Bacillus sp. ABP14 1892404 species species 1405 1 Bacillus mycoides 0 1783 5647 0 Bacillus thuringiensis 1 species 1428 961 0 1664069 species Bacillus glycinifermentans 1 0 1 2270 7 family 186823 9 Alicyclobacillaceae genus 432330 3 Tumebacillus 0 1 1075 14 769 0 1903704 species Tumebacillus avium 1 1 Tumebacillus algifaecis 1214604 species 292 0 1 0 5 634 3 Kyrpidia genus 1129704 308 0 Kyrpidia sp. EA-1 1 2055160 species Kyrpidia tusciae 1 33943 species 0 321 3 554 1 0 2 Alicyclobacillus 29330 genus 0 551 Alicyclobacillus acidocaldarius 1 405212 species 41 Staphylococcaceae 90964 family 3480 23069 1 0 13 1918 1 0 Macrococcus 4 genus 69965 1170 0 69966 species Macrococcus caseolyticus 1 1 no rank 2619255 426 0 0 426 1898474 species 1 Macrococcus sp. IME1552 1 Macrococcus canis species 1855823 309 0 1 0 16 176 2 Auricoccucs 2005363 genus 160 0 1 Auricoccus indicus 1849491 species 16859 1023 0 1 1279 genus 33 Staphylococcus 1 Staphylococcus nepalensis 214473 species 0 277 341 0 Staphylococcus simiae 1 308354 species 282 0 985762 species 1 Staphylococcus agnetis 0 479 1286 species Staphylococcus simulans 1 1281 species 1 Staphylococcus carnosus 0 340 414 0 1 Staphylococcus saprophyticus 29385 species 321 0 1292 species Staphylococcus warneri 1 45972 species Staphylococcus pasteuri 1 544 0 369 0 1 Staphylococcus succinus species 61015 573 0 species 1288 Staphylococcus xylosus 1 0 401 1 Staphylococcus equorum species 246432 985002 species Staphylococcus argenteus 1 0 496 0 252 1 Staphylococcus lutrae species 155085 320 0 70255 species 1 Staphylococcus condimenti 0 394 species 29384 Staphylococcus kloosii 1 0 243 1 Staphylococcus cohnii 29382 species 0 373 Staphylococcus piscifermentans 1 species 70258 29388 species 1 Staphylococcus capitis 0 357 283734 species Staphylococcus pseudintermedius 1 1636 0 Staphylococcus hyicus 1 1284 species 220 0 no rank 91994 1 345 0 1 Staphylococcus sp. AntiMn-1 1715860 species 0 345 species 170573 1 Staphylococcus pettenkoferi 274 0 131 0 1 Staphylococcus muscae 1294 species 1 Staphylococcus schleiferi species 1295 0 442 1 Staphylococcus epidermidis 1282 species 636 0 381 0 species 1283 1 Staphylococcus haemolyticus 272 0 Staphylococcus stepanovicii 1 643214 species species 46127 Staphylococcus felis 1 0 203 Staphylococcus lugdunensis 1 28035 species 0 286 1280 species 1 Staphylococcus aureus 0 3422 323 0 1 Staphylococcus hominis 1290 species 1 Staphylococcus sciuri species 1296 489 0 636 0 1 45669 genus species 407035 Salinicoccus halodurans 1 0 636 1 0 7 3615 Listeriaceae 8 186820 family 0 371 1 2755 genus 0 371 2756 species Brochothrix thermosphacta 1 1 0 39 3237 6 Listeria genus 1637 1643 species 1 Listeria welshimeri 442 0 Listeria ivanovii 1 species 1638 573 0 Listeria seeligeri 1 species 1640 377 0 1639 species 1 Listeria monocytogenes 1389 0 0 417 1642 species Listeria innocua 1 0 name 1 0 240 2157 superkingdom 0 24818 28890 phylum Euryarchaeota 195 22346 3 0 1 16 clade 2283796 0 1344 2 1803510 clade 0 178 2 genus 379546 178 0 1 Aciduliprofundum boonei 379547 species 130 0 48 0 no rank 2633939 1 673860 species Aciduliprofundum sp. MAR08-339 1 48 0 3 1166 1 0 14 Thermoplasmata class 183967 2301 order 7 0 816 1 family 46630 0 142 1 genus 46631 142 0 142 0 82076 species 1 Picrophilus torridus 2 46659 family 158 0 0 158 genus 2302 2 73 0 Thermoplasma acidophilum 1 species 2303 Thermoplasma volcanium 1 50339 species 85 0 141 0 1 1919231 no rank 141 0 1 Thermoplasmatales archaeon BRNA1 species 1054217 2 90142 family 243 0 2 genus 74968 0 243 species 97393 Ferroplasma acidarmanus 1 123 0 1 Ferroplasma acidiphilum 74969 species 0 120 family 1747776 1 0 132 0 132 genus 1747777 1 132 0 Cuniculiplasma divulgatum 1 species 1673428 0 98 1 no rank 1234666 1495144 species methanogenic archaeon ISO4-H5 1 98 0 249 0 order 1235850 5 151 14 0 1 family 1577788 3 Methanomassiliicoccaceae 1080709 genus 1 0 97 1406512 species 1 Candidatus Methanomassiliicoccus intestinalis 97 0 40 0 1607807 genus 1 40 0 1 Candidatus Methanoplasma termitum 1577791 species 98 0 2 family 2517203 0 1 98 16 1291539 genus Candidatus Methanomethylophilus 2 82 0 1291540 species Candidatus Methanomethylophilus alvus 1 1 1901 1 0 9 Archaeoglobi 183980 class 8 2231 order 0 1900 8 2232 family 0 1900 0 150 2 190818 genus 1 Geoglobus ahangari 113653 species 0 97 0 53 species 565033 1 Geoglobus acetivorans 0 1 1677 1 2233 genus Archaeoglobus 5 2234 species Archaeoglobus fulgidus 1 0 101 1412 0 Archaeoglobus sulfaticallidus 1 1316941 species Archaeoglobus profundus 1 84156 species 0 33 Archaeoglobus veneficus 1 58290 species 130 0 1 54260 genus 73 0 0 73 Ferroglobus placidus 1 54261 species 2290931 clade 97 11083 0 class 183963 Halobacteria 56 0 1 3920 47 2235 order Halobacteriales 24 1541 41 0 1 1963268 family 15 Haloarculaceae 0 1 961 2 146825 genus 2 199 0 430914 species 1 Halorhabdus tiamatea 59 0 1 Halorhabdus utahensis 146826 species 140 0 13 476 1 0 5 Haloarcula 2237 genus 0 120 1 2624677 no rank species 1592728 Haloarcula sp. CBA1115 1 120 0 0 96 1 Haloarcula taiwanensis 1932004 species 0 142 Haloarcula hispanica 1 51589 species 0 105 2238 species 1 Haloarcula marismortui 1 134 1 0 3 Natronomonas genus 63743 31 0 species 2257 1 Natronomonas pharaonis 0 102 1 Natronomonas moolapensis species 416273 203135 genus Halomicrobium 2 0 1 89 2 1 Halomicrobium mukohataei 57705 species 0 87 genus 1073987 2 Halorientalis 0 1 61 5 0 56 2648975 no rank 1 0 56 1932360 species 1 Halorientalis sp. IM1011 2236 family Halobacteriaceae 8 539 3 0 1 91 0 1 332246 genus Halalkalicoccus jeotgali 1 413810 species 91 0 1980514 genus 1 0 81 0 81 Halodesulfurarchaeum formicicum 1 1873524 species 0 76 1 genus 1656823 species 1604004 1 Halanaeroarchaeum sulfurireducens 0 76 288 8 0 1 genus 2239 4 Halobacterium 0 131 species 2242 Halobacterium salinarum 1 species 1407499 1 Halobacterium hubeiense 0 91 0 58 2668073 no rank 1 58 0 751944 species Halobacterium sp. DL1 1 14 Haloferacales 1644055 order 1 0 22 1064 0 44 no rank 2678336 1 756883 species 1 halophilic archaeon DL31 0 44 family 1963271 6 Halorubraceae 0 1 370 9 1 genus 1644057 171 0 171 0 755307 species Salinigranum rubrum 1 0 107 2 genus 56688 Halorubrum lacusprofundi 1 2247 species 0 40 67 0 29284 species Halorubrum trapanicum 1 Halopenitus 2 1209988 genus 2 83 1 0 1 Halopenitus persicus 1048396 species 81 0 628 0 6 family 1644056 44 0 1 60846 genus Halogeometricum borinquense 1 60847 species 44 0 1 293431 genus 0 150 Haloquadratum walsbyi 1 species 293091 0 150 0 1 434 9 2251 genus 4 Haloferax 2246 species 1 Haloferax volcanii 121 0 species 2252 1 Haloferax mediterranei 0 181 species 35746 1 Haloferax gibbonsii 123 0 1644060 order Natrialbales 17 1268 5 0 1 1644061 family 16 Natrialbaceae 1263 24 0 1 116 2 0 1 88723 genus 3 Natrinema 0 64 1 Natrinema pellirubrum 69525 species no rank 2622230 1 0 50 50 0 Natrinema sp. J7-2 1 406552 species 96 0 1 203193 genus 96 0 1 Halobiforma lacisalsi 229731 species 3 Haloterrigena genus 121871 1 414 1 0 0 297 Haloterrigena daqingensis 1 588898 species 0 116 species 62320 Haloterrigena turkmenica 1 1 1269201 genus 88 0 88 0 no rank 2621923 1 88 0 species 1333523 1 Salinarchaeum sp. Harcht-Bsk1 0 1 66 1 genus 387342 2 Halopiger 0 65 387343 species 1 Halopiger xanaduensis genus 2256 1 43 0 44930 species 1 Natronobacterium gregoryi 0 43 108 1 0 1 29287 genus Natronococcus 2 107 0 species 29288 1 Natronococcus occultus genus 353799 1 0 127 Halostagnicola larsenii 1 353800 species 0 127 181 0 63742 genus 1 species 13769 Natrialba magadii 1 181 0 class 224756 Methanomicrobia 41 0 1 7163 7 0 1753 12 2191 order 781 1 0 1 family 2194 Methanomicrobiaceae 6 0 218 1 230355 genus 218 0 1 Methanolacinia petrolearia 54120 species Methanoculleus 4 45989 genus 5 562 1 0 94 0 2198 species Methanoculleus marisnigri 1 291 0 Methanoculleus bourgensis 1 species 83986 0 172 2619537 no rank 1 1 Methanoculleus sp. MAB1 86622 species 172 0 88404 family 2 0 247 1 0 1 247 Methanocorpusculum 2 2192 genus 1 Methanocorpusculum labreanum 83984 species 246 0 3 family 1198451 0 593 475087 genus 1 0 73 0 73 species 475088 1 Methanosphaerula palustris 0 520 2 395331 genus 132 0 1 Methanoregula boonei species 358766 0 388 Methanoregula formicica 1 882104 species 0 132 196137 family 1 2202 genus 1 0 132 1 Methanospirillum hungatei species 2203 132 0 1 0 1 204 3 Methanocellales 570264 order family 570265 2 203 0 genus 570266 2 203 0 Methanocella arvoryzae 1 1175445 species 113 0 0 90 Methanocella conradii 1 1175444 species 5199 17 0 1 order 94695 Methanosarcinales 25 274 0 2 143067 family 0 274 2 2222 genus 0 129 species 2223 Methanothrix soehngenii 1 0 145 301375 species Methanosaeta harundinacea 1 family 2206 Methanosarcinaceae 22 0 1 4908 2 2175 genus 2 0 181 93 0 1 Methanohalophilus halophilus 2177 species 0 88 species 2176 1 Methanohalophilus mahii genus 196136 1 209 0 species 39669 1 Methanosalsum zhilinae 0 209 2207 genus 13 Methanosarcina 0 1 3744 14 2210 species 1 Methanosarcina thermophila 198 0 410 0 2214 species 1 Methanosarcina acetivorans 398 0 2209 species 1 Methanosarcina mazei 1 Methanosarcina vacuolata 2215 species 0 238 418008 species 1 Methanosarcina horonobensis 0 263 1 Methanosarcina siciliae species 38027 0 248 0 185 1 Methanosarcina lacustris species 170861 0 906 2208 species Methanosarcina barkeri 1 884 0 4 no rank 2644672 1 Methanosarcina sp. Kolksee 1434099 species 286 0 Methanosarcina sp. WH1 1 species 1434102 239 0 species 1434103 Methanosarcina sp. WWM596 1 209 0 150 0 1434100 species 1 Methanosarcina sp. MTP4 0 287 1 101191 genus 1 Methanomethylovorans hollandica 101192 species 287 0 0 90 2321 genus 1 Methanohalobium evestigatum 1 2322 species 90 0 2220 genus 1 0 126 126 0 species 420950 1 Methanolobus psychrophilus 2 genus 2225 269 0 118 0 Methanococcoides methylutens 1 species 2226 0 151 29291 species Methanococcoides burtonii 1 33 clade 2283794 5303 0 2814 8 0 1 class 183925 Methanobacteria 21 2806 0 20 2158 order Methanobacteriaceae 19 family 2159 1 0 8 2718 971 0 7 genus 2160 90 0 Methanobacterium congolense 1 118062 species 2 2627676 no rank 0 275 0 217 1 Methanobacterium sp. MZ-A1 1911685 species species 1379702 Methanobacterium sp. MB1 1 0 58 0 182 1 Methanobacterium subterraneum species 59277 Methanobacterium paludis 1 868131 species 0 84 149 0 Methanobacterium lacus 1 species 877455 0 191 Methanobacterium formicicum 1 species 2162 genus 2172 6 0 1543 0 206 1 Methanobrevibacter ruminantium 83816 species 2638681 no rank 2 413 0 1 Methanobrevibacter sp. YE315 1609968 species 197 0 216 0 species 224719 1 Methanobrevibacter sp. AbM4 species 294671 1 Methanobrevibacter olleyae 341 0 0 208 1 Methanobrevibacter smithii 2173 species 1 Methanobrevibacter millerae species 230361 0 375 104 0 1 2316 genus Methanosphaera stadtmanae 1 2317 species 104 0 genus 145260 4 92 0 species 145262 Methanothermobacter thermautotrophicus 1 25 0 0 10 1 Methanothermobacter marburgensis 145263 species 0 36 1 Methanothermobacter wolfeii 145261 species 21 0 1 no rank 2631116 1 Methanothermobacter sp. CaT2 866790 species 0 21 88 0 1 family 2178 genus 2179 1 0 88 88 0 2180 species Methanothermus fervidus 1 0 2489 12 class 183939 0 2489 2182 order 12 2183 family 5 0 1809 1 155862 genus 117 0 117 0 species 155863 Methanothermococcus okinawensis 1 4 genus 2184 0 1692 Methanococcus aeolicus 1 species 42879 113 0 Methanococcus vannielii 1 species 2187 0 52 39152 species Methanococcus maripaludis 1 1475 0 52 0 Methanococcus voltae 1 2188 species 680 0 7 family 196117 91 0 1 196119 genus 1 Methanotorris igneus species 2189 91 0 589 0 6 196118 genus 129 0 species 1301915 Methanocaldococcus bathoardescens 1 0 53 Methanocaldococcus fervens 1 83171 species Methanocaldococcus infernus 1 67760 species 0 22 112 0 2641196 no rank 1 Methanocaldococcus sp. FS406-22 1 644281 species 0 112 1 Methanocaldococcus jannaschii species 2190 0 108 0 165 species 73913 Methanocaldococcus vulcanius 1 2712 0 183968 class 39 2712 5 0 1 2258 order Thermococcales 39 family 2259 38 Thermococcaceae 2707 5 0 1 2263 genus Thermococcus 29 0 1 2246 14 species 54262 Thermococcus chitonophagus 1 49 0 0 94 54077 species 1 Thermococcus barossii species 71998 1 Thermococcus pacificus 0 76 1 Thermococcus siculi 72803 species 53 0 110164 species 1 Thermococcus guaymasensis 0 77 Thermococcus gorgonarius 1 71997 species 0 70 species 277988 Thermococcus thioreducens 1 0 34 77 0 species 311400 Thermococcus kodakarensis 1 49899 species Thermococcus profundus 1 0 91 0 47 187878 species 1 Thermococcus gammatolerans 51 0 species 163003 Thermococcus cleftensis 1 6 2627626 no rank 0 497 Thermococcus sp. 5-4 1 species 2008440 96 0 Thermococcus sp. P6 1 species 122420 34 0 0 51 1674923 species Thermococcus sp. 2319x1 1 Thermococcus sp. 4557 1 species 1042877 105 0 0 73 1 Thermococcus sp. EXT12c species 2016361 0 138 246969 species 1 Thermococcus sp. AM4 121 0 53952 species Thermococcus peptonophilus 1 species 195522 1 Thermococcus nautili 0 94 113 0 Thermococcus radiotolerans 1 species 187880 57 0 1 Thermococcus eurythermalis species 1505907 0 60 species 1712654 Thermococcus piezophilus 1 199 0 172049 species 1 Thermococcus sibiricus 582419 species Thermococcus paralvinellae 1 0 102 Thermococcus onnurineus 1 342948 species 0 39 76 0 Thermococcus celer 1 2264 species 83 0 2265 species Thermococcus litoralis 1 0 72 55802 species 1 Thermococcus barophilus 83867 genus 1 85 0 971279 species 1 Palaeococcus pacificus 0 85 2260 genus 7 371 0 25 0 Pyrococcus kukulkanii 1 1609559 species 1 Pyrococcus furiosus species 2261 126 0 2629106 no rank 2 0 97 35 0 Pyrococcus sp. NA2 1 342949 species 1183377 species Pyrococcus sp. ST04 1 62 0 60 0 53953 species 1 Pyrococcus horikoshii 1 Pyrococcus abyssi 29292 species 0 49 Pyrococcus yayanosii 1 species 1008460 0 14 clade 1783276 1 8 0 phylum 1801631 1 8 0 1 genus 2490204 0 8 1 Candidatus Micrarchaeota archaeon Mia14 species 1920749 0 8 clade 1783275 44 2464 0 0 2032 34 28889 phylum 2032 0 class 183924 34 523 2 0 1 order 2266 11 Thermoproteales 312 0 family 2267 6 1 genus 76886 0 30 Caldivirga maquilingensis 1 species 76887 30 0 192 0 2 genus 164450 1 Vulcanisaeta distributa 164451 species 0 104 Vulcanisaeta moutnovskia 1 species 985052 0 88 76 0 genus 2270 2 53 0 1 Thermoproteus uzoniensis 184117 species 0 23 1 Thermoproteus tenax 2271 species 1 2276 genus 0 14 0 14 Pyrobaculum islandicum 1 2277 species 209 0 4 114378 family 209 0 4 genus 2268 species 1483572 Thermofilum carboxyditrophus 1 0 81 0 34 Thermofilum uzonense 1 species 1550241 1 Thermofilum pendens species 2269 0 14 80 0 species 1365176 Thermofilum adornatus 1 12 Desulfurococcales order 114380 3 379 1 0 83 0 family 2307 3 54251 genus 1 18 0 54252 species 1 Pyrolobus fumarii 0 18 2308 genus 1 57 0 57 0 Pyrodictium delaneyi 1 species 1273541 54247 genus 1 8 0 0 8 54248 species Hyperthermus butylicus 1 293 0 8 2272 family 0 64 2 54258 genus 25 0 1 Ignicoccus hospitalis 160233 species 54259 species Ignicoccus islandicus 1 39 0 2273 genus 2 0 64 94694 species Desulfurococcus amylolyticus 1 10 0 1 Desulfurococcus mucosus species 2275 54 0 0 49 1 477695 genus species 1200300 1 Thermogladius calderae 0 49 96 0 genus 2279 2 85 0 Staphylothermus hellenicus 1 species 84599 0 11 1 Staphylothermus marinus 2280 species 0 20 54253 genus 1 20 0 54254 species Thermosphaera aggregans 1 8 2281 order 1004 0 1004 0 118883 family 8 155 0 1 69655 genus 1 Sulfolobus tokodaii 111955 species 0 155 1 2100760 genus 0 75 2287 species Sulfolobus solfataricus 1 0 75 575 0 2284 genus 3 species 43080 1 Sulfolobus islandicus 0 365 1 2641160 no rank 82 0 0 82 Sulfolobus sp. A20 1 1891280 species 2285 species Sulfolobus acidocaldarius 1 0 128 90 0 1 genus 12914 0 90 1 Acidianus hospitalis species 563177 2 41980 genus 0 109 Metallosphaera sedula 1 43687 species 0 40 69 0 Metallosphaera cuprina 1 1006005 species 3 871006 order 0 126 52 0 1 255472 family 1 200414 genus 52 0 Caldisphaera lagunensis 1 species 200415 52 0 Acidilobaceae 2 family 871007 1 0 2 74 1 105850 genus 0 72 0 72 species 242703 1 Acidilobus saccharovorans 421 0 9 651137 phylum 239 0 4 order 31932 1 239 1 0 Nitrosopumilaceae 4 338190 family 0 67 1993653 genus 1 Candidatus Nitrosomarinus catalina 1 species 1898749 0 67 171 0 genus 338191 2 Candidatus Nitrosopumilus adriaticus 1 species 1580092 0 114 57 0 Candidatus Nitrosopumilus sediminis 1 1229909 species 3 651142 no rank 88 0 2 genus 1825023 0 55 0 40 species 1603555 1 Candidatus Nitrosotenuis cloacae 1 Candidatus Nitrosotenuis sp. AQ6f 1846278 species 0 15 genus 1593364 1 33 0 1410606 species 1 Candidatus Nitrosopelagicus brevis 33 0 0 94 2 class 1643678 0 37 order 1968909 1 37 0 1 family 1968910 genus 498374 1 37 0 2045011 species Candidatus Nitrosocaldus islandicus 1 37 0 0 57 1 order 1033996 1 family 1033997 0 57 1 497726 genus 57 0 57 0 1034015 species Nitrososphaera viennensis 1 11 0 phylum 51967 1 genus 498845 1 11 0 0 11 species 498846 Candidatus Korarchaeum cryptofilum 1