members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 13537425 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 22640 31 4850 0 316 2157 superkingdom 104112 17424 clade 71 1783275 0 0 11036 17 651137 phylum order 31932 7 4064 Nitrosopumilales 1 0 5 family 338190 6 4059 Nitrosopumilaceae 1 0 1 0 8 1 Nitrosopumilus 2918 genus 338191 3 Candidatus Nitrosopumilus adriaticus 1883 species 1580092 1 0 0 species 1 1229909 Candidatus Nitrosopumilus sediminis 1027 2 1993653 genus 1 Candidatus Nitrosomarinus 1140 5 0 Candidatus Nitrosomarinus catalina 1135 species 1 1898749 0 651142 5 no rank 1082 0 1 0 422 Candidatus Nitrosotenuis 1 1825023 3 genus 220 Candidatus Nitrosotenuis cloacae 1 1603555 species 0 species 1846278 1 Candidatus Nitrosotenuis sp. AQ6f 201 0 0 5 Candidatus Nitrosopelagicus 660 1 genus 1593364 2 0 Candidatus Nitrosopelagicus brevis 655 1410606 1 species 0 5 1643678 class 5890 1 Candidatus Nitrosocaldales 3847 1968909 3 order 1 0 3846 family 2 1968910 0 genus 498374 2 1 Candidatus Nitrosocaldus 3846 0 1 0 3845 Candidatus Nitrosocaldus islandicus 2045011 1 species 0 2043 order 1033996 2 0 2043 1033997 2 family 1 0 Nitrososphaera 2043 1 2 497726 genus Nitrososphaera viennensis 2042 1 1034015 species 0 0 1 51967 phylum 139 1 498845 genus 139 0 Candidatus Korarchaeum cryptofilum 139 1 498846 species 0 0 6249 phylum 53 28889 0 2 1 6249 Thermoprotei class 53 183924 0 1 Sulfolobales 2894 1 order 2281 11 family 10 118883 Sulfolobaceae 2893 1 0 32 447 1 69655 genus 0 0 447 Sulfolobus tokodaii species 111955 1 0 1 12914 genus 347 347 Acidianus hospitalis 563177 1 species 0 41980 2 genus 347 0 0 Metallosphaera sedula 149 1 43687 species species 1 1006005 198 Metallosphaera cuprina 0 genus 2284 4 1 Sulfolobus 1293 0 18 0 1 2641160 no rank 415 415 Sulfolobus sp. A20 1891280 1 species 0 0 species 2285 1 Sulfolobus acidocaldarius 254 species 1 43080 Sulfolobus islandicus 606 0 427 genus 2100760 1 0 1 2287 species 427 Sulfolobus solfataricus 0 0 1 1 1289 Thermoproteales order 15 2266 2 0 2267 8 family 1 753 Thermoproteaceae 199 genus 2 2270 0 0 1 184117 species Thermoproteus uzoniensis 101 0 species 1 2271 Thermoproteus tenax 98 1 Vulcanisaeta 297 genus 164450 3 0 1 0 Vulcanisaeta moutnovskia 156 species 1 985052 0 140 Vulcanisaeta distributa species 164451 1 2276 1 genus 96 0 0 species 2277 1 96 Pyrobaculum islandicum 0 159 genus 1 76886 159 Caldivirga maquilingensis 76887 1 species 0 1 0 1 Thermofilaceae 535 114378 6 family 0 33 1 534 Thermofilum genus 5 2268 1 1550241 species 125 Thermofilum uzonense 0 152 Thermofilum pendens species 1 2269 0 1 1365176 species 107 Thermofilum adornatus 0 Thermofilum carboxyditrophus 117 1 1483572 species 0 114380 21 order 1 1510 Desulfurococcales 3 0 480 Pyrodictiaceae 1 2307 7 family 33 0 1 0 2308 2 genus 1 92 Pyrodictium 91 Pyrodictium delaneyi species 1 1273541 0 genus 2 54247 1 Hyperthermus 218 0 1 0 Hyperthermus butylicus 217 species 54248 1 1 0 2 54251 genus Pyrolobus 137 1 species 1 54252 136 Pyrolobus fumarii 0 family 2272 13 1027 Desulfurococcaceae 1 0 10 genus 1 54253 58 0 Thermosphaera aggregans 58 species 1 54254 0 28 0 2279 3 genus 514 Staphylothermus 1 0 Staphylothermus marinus 304 2280 1 species 182 Staphylothermus hellenicus species 1 84599 0 93 Thermogladius 1 genus 2 477695 0 26 1 1200300 species Thermogladius calderae 67 0 0 1 genus 3 2273 189 Desulfurococcus 1 0 Desulfurococcus mucosus 66 species 2275 1 0 species 94694 1 122 Desulfurococcus amylolyticus Ignicoccus 163 1 genus 54258 3 0 1 0 54259 1 species Ignicoccus islandicus 72 0 Ignicoccus hospitalis 90 160233 1 species order 5 871006 Acidilobales 554 1 0 3 480 255472 2 family 0 2 0 Caldisphaera 480 1 200414 2 genus 200415 1 species 478 Caldisphaera lagunensis 0 0 71 2 871007 family 1 Acidilobus 71 genus 2 105850 0 1 0 70 Acidilobus saccharovorans species 242703 1 0 1 1783276 clade 88 phylum 1 1801631 88 0 0 88 genus 2490204 1 0 species 1920749 1 88 Candidatus Micrarchaeota archaeon Mia14 phylum 244 28890 1 Euryarchaeota 86600 0 4 0 clade 2283796 25 4900 0 547 3 1803510 clade genus 3 379546 547 Aciduliprofundum 1 0 7 0 266 no rank 2633939 1 1 673860 species Aciduliprofundum sp. MAR08-339 266 0 0 274 Aciduliprofundum boonei species 379547 1 1 Thermoplasmata 4353 22 183967 class 2 0 no rank 1234666 1 276 0 0 276 methanogenic archaeon ISO4-H5 1495144 1 species order 1235850 6 1 Methanomassiliicoccales 1791 0 2 Methanomassiliicoccaceae 1415 1 1577788 4 family 24 0 genus 1 1607807 328 0 0 328 Candidatus Methanoplasma termitum species 1 1577791 2 0 1 Methanomassiliicoccus 1063 2 1080709 genus Candidatus Methanomassiliicoccus intestinalis 1061 species 1 1406512 0 0 2517203 1 family 374 0 374 genus 1291539 1 0 374 Candidatus Methanomethylophilus alvus 1291540 1 species 17 0 2284 Thermoplasmatales 1 2301 14 order 338 no rank 1919231 1 0 1 1054217 species Thermoplasmatales archaeon BRNA1 338 0 Thermoplasmataceae 380 1 family 4 46659 0 4 1 Thermoplasma 376 3 2302 genus 7 0 0 Thermoplasma acidophilum 159 1 2303 species 0 species 50339 1 210 Thermoplasma volcanium 625 family 3 90142 0 8 0 3 74968 genus 1 625 Ferroplasma 320 Ferroplasma acidarmanus 1 97393 species 0 0 297 Ferroplasma acidiphilum species 1 74969 12 0 1747776 3 family 1 636 Cuniculiplasmataceae 0 18 genus 2 1747777 1 624 Cuniculiplasma 0 1 1673428 species Cuniculiplasma divulgatum 606 0 288 family 2 46630 288 Picrophilus 1 46631 2 genus 7 0 species 82076 1 Picrophilus torridus 281 0 53371 122 2290931 clade 0 18074 Methanomicrobia 1 224756 55 class 8 0 Methanosarcinales 14742 1 order 94695 30 0 30 34 0 13922 Methanosarcinaceae 1 2206 25 family 1 273 Methanomethylovorans genus 2 101191 0 8 265 Methanomethylovorans hollandica species 1 101192 0 1 Methanosalsum 412 genus 2 196136 0 1 species 1 39669 411 Methanosalsum zhilinae 0 1 239 Methanolobus 2 2220 genus 2 0 0 species 420950 1 237 Methanolobus psychrophilus 0 genus 2225 2 769 0 species 2226 1 Methanococcoides methylutens 415 0 Methanococcoides burtonii 354 1 29291 species 0 590 2 2175 genus 0 species 1 2176 296 Methanohalophilus mahii 2177 1 species 294 Methanohalophilus halophilus 0 genus 13 2207 1 10557 Methanosarcina 0 25 2644672 4 no rank 2020 0 0 1434099 1 species 662 Methanosarcina sp. Kolksee species 1434100 1 622 Methanosarcina sp. MTP4 0 0 Methanosarcina sp. WWM596 377 species 1 1434103 0 species 1 1434102 Methanosarcina sp. WH1 359 2215 1 species 735 Methanosarcina vacuolata 0 0 1246 Methanosarcina mazei species 1 2209 species 38027 1 Methanosarcina siciliae 2107 0 0 1 418008 species Methanosarcina horonobensis 395 0 2214 1 species 464 Methanosarcina acetivorans 0 559 Methanosarcina lacustris 1 170861 species 315 Methanosarcina thermophila species 2210 1 0 1 2208 species Methanosarcina barkeri 2691 0 1 2321 genus 1048 0 0 1048 Methanohalobium evestigatum 1 2322 species 4 143067 family 1 Methanosaetaceae 790 3 0 0 19 genus 3 2222 1 Methanothrix 787 0 Methanosaeta harundinacea 346 species 301375 1 422 Methanothrix soehngenii species 1 2223 0 9 0 5 570264 order 1 Methanocellales 857 0 2 family 570265 4 1 Methanocellaceae 848 846 Methanocella 1 genus 570266 3 0 25 0 178 Methanocella conradii species 1175444 1 0 643 Methanocella arvoryzae 1175445 1 species 27 0 Methanomicrobiales 2467 1 2191 19 order 8 0 1 1130 Methanomicrobiaceae 7 2194 family 1 879 Methanoculleus genus 45989 4 0 14 species 1 2198 Methanoculleus marisnigri 353 0 0 1 2619537 no rank 229 0 229 Methanoculleus sp. MAB1 1 86622 species 283 Methanoculleus bourgensis species 1 83986 0 1 243 Methanolacinia 2 230355 genus 10 0 0 Methanolacinia petrolearia 233 54120 1 species 0 196137 2 family 339 1 339 Methanospirillum genus 2 2202 0 17 Methanospirillum hungatei 322 species 1 2203 0 1 221 Methanocorpusculaceae family 88404 3 0 2 1 Methanocorpusculum 219 2192 2 genus 9 0 0 Methanocorpusculum labreanum 210 1 83984 species 1198451 6 family 1 Methanoregulaceae 750 18 0 5 0 2 475087 genus Methanosphaerula 276 1 0 Methanosphaerula palustris 271 species 1 475088 0 9 Methanoregula 456 1 genus 395331 3 882104 1 species 180 Methanoregula formicica 0 0 species 358766 1 Methanoregula boonei 267 0 74 class 183963 67 35297 Halobacteria 1 106 0 1 Haloferacales 14764 1644055 19 order 0 525 1 2678336 no rank 0 525 halophilic archaeon DL31 756883 1 species 2502 Halorubraceae 1 family 1963271 8 0 17 0 6 genus 1209988 2 Halopenitus 455 1 1048396 1 species 449 Halopenitus persicus 0 1 Halorubrum 1064 genus 56688 3 0 12 species 2247 1 459 Halorubrum lacusprofundi 0 Halorubrum trapanicum 593 species 29284 1 0 8 0 1644057 2 genus 1 Salinigranum 966 755307 1 species Salinigranum rubrum 958 0 38 0 1 Haloferacaceae 11631 9 1644056 family genus 293431 2 1 Haloquadratum 8898 0 8 0 1 293091 species Haloquadratum walsbyi 8890 Halogeometricum 330 1 genus 60846 2 0 5 0 325 Halogeometricum borinquense 60847 1 species 19 0 Haloferax 2365 1 2251 4 genus 970 Haloferax volcanii species 2246 1 0 1 35746 species Haloferax gibbonsii 987 0 0 Haloferax mediterranei 389 species 2252 1 27 0 2235 27 order 5536 Halobacteriales 1 family 1963268 15 1 3454 Haloarculaceae 0 16 0 13 1 Halorhabdus 520 genus 3 146825 1 146826 species Halorhabdus utahensis 252 0 0 species 430914 1 Halorhabdus tiamatea 255 0 1 1 706 Natronomonas genus 63743 3 species 1 416273 Natronomonas moolapensis 363 0 0 Natronomonas pharaonis 342 2257 1 species 0 genus 1073987 1 416 0 416 no rank 1 2648975 1 1932360 species 416 Halorientalis sp. IM1011 0 genus 5 2237 1442 Haloarcula 1 0 18 Haloarcula marismortui 367 species 2238 1 0 0 2624677 1 no rank 360 360 Haloarcula sp. CBA1115 species 1 1592728 0 0 367 Haloarcula hispanica species 1 51589 0 1 1932004 species 330 Haloarcula taiwanensis 2 203135 genus 1 Halomicrobium 354 1 0 0 species 57705 1 353 Halomicrobium mukohataei 0 8 1 2055 Halobacteriaceae family 2236 11 genus 2 1656823 178 Halanaeroarchaeum 1 0 2 species 1 1604004 176 Halanaeroarchaeum sulfurireducens 0 0 6 1 Halalkalicoccus 370 genus 2 332246 0 Halalkalicoccus jeotgali 364 species 413810 1 1 Halodesulfurarchaeum 156 1980514 2 genus 3 0 species 1873524 1 153 Halodesulfurarchaeum formicicum 0 4 2239 genus Halobacterium 1343 1 19 0 1407499 1 species 495 Halobacterium hubeiense 0 0 no rank 2668073 1 496 0 1 751944 species 496 Halobacterium sp. DL1 0 species 1 2242 333 Halobacterium salinarum 85 0 20 1644060 order 14923 Natrialbales 1 0 39 1 14838 Natrialbaceae family 1644061 19 0 340 genus 353799 1 0 340 Halostagnicola larsenii species 1 353800 0 2 genus 2256 2 494 Natronobacterium 1 44930 1 species 492 Natronobacterium gregoryi 0 4 0 3 121871 genus 1653 Haloterrigena 1 0 Haloterrigena daqingensis 1003 588898 1 species species 62320 1 646 Haloterrigena turkmenica 0 genus 2 1269201 1 434 Salinarchaeum 0 2 432 no rank 2621923 1 0 Salinarchaeum sp. Harcht-Bsk1 432 1 1333523 species 0 genus 203193 2 1 1129 Halobiforma 0 1 0 1128 Halobiforma lacisalsi 229731 1 species 11 0 1 8651 Natrialba 63742 2 genus 1 13769 species Natrialba magadii 8640 0 genus 29287 1 546 0 Natronococcus occultus 546 1 29288 species 0 3 88723 genus 1 Natrinema 879 5 0 no rank 2622230 1 384 0 species 406552 1 Natrinema sp. J7-2 384 0 Natrinema pellirubrum 490 species 69525 1 0 2 387342 genus Halopiger 673 1 2 0 Halopiger xanaduensis 671 species 387343 1 0 0 8 class 41 183968 1 Thermococci 9663 3 0 2258 40 order Thermococcales 9655 1 0 1 1 Thermococcaceae 9652 family 39 2259 0 genus 1 83867 174 0 Palaeococcus pacificus 174 1 971279 species 0 10 1 Pyrococcus 952 genus 2260 8 species 1 29292 110 Pyrococcus abyssi 0 180 Pyrococcus furiosus 2261 1 species 0 0 species 1 53953 119 Pyrococcus horikoshii 1008460 1 species 77 Pyrococcus yayanosii 0 1 1609559 species 126 Pyrococcus kukulkanii 0 0 no rank 2629106 2 330 0 species 1183377 1 Pyrococcus sp. ST04 193 0 species 1 342949 Pyrococcus sp. NA2 137 0 46 1 Thermococcus 8525 genus 2263 29 216 Thermococcus paralvinellae species 1 582419 0 Thermococcus celer 108 1 2264 species 0 species 1 71997 97 Thermococcus gorgonarius 0 163003 1 species 95 Thermococcus cleftensis 0 73 Thermococcus barossii 1 54077 species 0 0 195522 1 species 96 Thermococcus nautili 0 55802 1 species Thermococcus barophilus 320 1 2265 species Thermococcus litoralis 174 0 0 187880 1 species Thermococcus radiotolerans 92 0 Thermococcus onnurineus 86 342948 1 species Thermococcus guaymasensis 84 species 1 110164 0 0 187878 1 species Thermococcus gammatolerans 164 0 172049 1 species 234 Thermococcus sibiricus 0 53952 1 species 69 Thermococcus peptonophilus 0 species 1 277988 105 Thermococcus thioreducens 311400 1 species 94 Thermococcus kodakarensis 0 593 no rank 2627626 6 0 0 species 1674923 1 133 Thermococcus sp. 2319x1 246969 1 species Thermococcus sp. AM4 121 0 0 Thermococcus sp. EXT12c 78 1 2016361 species 0 95 Thermococcus sp. 5-4 2008440 1 species 115 Thermococcus sp. 4557 1 1042877 species 0 0 1 122420 species Thermococcus sp. P6 51 0 81 Thermococcus pacificus 1 71998 species 0 Thermococcus siculi 5284 species 1 72803 species 54262 1 Thermococcus chitonophagus 147 0 0 species 49899 1 95 Thermococcus profundus 1712654 1 species 90 Thermococcus piezophilus 0 1 1505907 species Thermococcus eurythermalis 82 0 0 17427 clade 2283794 44 class 25 183925 1 Methanobacteria 8376 0 7 order 2158 24 8369 Methanobacteriales 1 0 13 1 7902 Methanobacteriaceae family 2159 22 0 7 24 0 8 2160 genus Methanobacterium 2471 1 species 868131 1 428 Methanobacterium paludis 0 877455 1 species 575 Methanobacterium lacus 0 0 species 59277 1 256 Methanobacterium subterraneum 1 118062 species Methanobacterium congolense 329 0 0 2162 1 species Methanobacterium formicicum 361 0 498 2 2627676 no rank Methanobacterium sp. MZ-A1 269 species 1911685 1 0 0 species 1379702 1 229 Methanobacterium sp. MB1 0 10 genus 7 2172 1 3954 Methanobrevibacter 0 Methanobrevibacter millerae 665 230361 1 species 0 species 1 83816 Methanobrevibacter ruminantium 652 0 Methanobrevibacter olleyae 965 species 294671 1 0 species 2173 1 658 Methanobrevibacter smithii 1004 no rank 2 2638681 0 451 Methanobrevibacter sp. YE315 1 1609968 species 0 224719 1 species Methanobrevibacter sp. AbM4 553 0 5 145260 genus Methanothermobacter 713 1 14 0 0 168 1 2631116 no rank 0 Methanothermobacter sp. CaT2 168 species 866790 1 145261 1 species Methanothermobacter wolfeii 120 0 0 species 1 145262 Methanothermobacter thermautotrophicus 152 0 259 Methanothermobacter marburgensis species 145263 1 757 genus 1 2316 0 757 Methanosphaera stadtmanae 2317 1 species 0 454 family 2178 1 0 0 genus 2179 1 454 1 2180 species 454 Methanothermus fervidus 0 class 19 183939 9051 Methanococci 1 0 6 order 18 2182 Methanococcales 9045 1 0 6 1 Methanocaldococcaceae 3553 196117 10 family 5 0 genus 196119 2 Methanotorris 509 1 0 2 Methanotorris igneus 507 species 2189 1 0 0 44 genus 196118 7 1 Methanocaldococcus 3039 species 73913 1 Methanocaldococcus vulcanius 534 0 0 Methanocaldococcus bathoardescens 523 1 1301915 species 500 Methanocaldococcus jannaschii 2190 1 species 0 1 2641196 no rank 538 0 0 538 Methanocaldococcus sp. FS406-22 644281 1 species 67760 1 species 375 Methanocaldococcus infernus 0 0 1 83171 species 525 Methanocaldococcus fervens 9 0 7 2183 family 5486 Methanococcaceae 1 genus 5 2184 1 5011 Methanococcus 0 10 Methanococcus aeolicus 635 species 1 42879 0 0 Methanococcus maripaludis 2166 species 39152 1 0 species 2187 1 Methanococcus vannielii 491 0 Methanococcus voltae 1709 2188 1 species 0 genus 155862 1 466 1 155863 species 466 Methanothermococcus okinawensis 0 1235 Archaeoglobi 1 class 183980 11 0 1 order 2231 10 1234 Archaeoglobales 1 0 1 family 9 2232 1233 Archaeoglobaceae 1 0 17 genus 2 190818 310 0 0 113653 1 species 157 Geoglobus ahangari 0 1 565033 species Geoglobus acetivorans 153 0 genus 1 54260 182 0 1 54261 species Ferroglobus placidus 182 0 10 Archaeoglobus 724 1 genus 5 2233 species 1 84156 161 Archaeoglobus profundus 0 species 1 1316941 196 Archaeoglobus sulfaticallidus 0 0 species 58290 1 Archaeoglobus veneficus 203 0 154 Archaeoglobus fulgidus 1 2234 species Bacteria 13410673 1 2 4502 superkingdom 61 0 36640 clade 96 1783257 0 1 Verrucomicrobia 9398 28 74201 phylum 13 0 253 class 134549 2 0 134550 2 genus 1 253 Candidatus Xiphinematobacter 8 0 245 1 2648876 no rank 0 245 Candidatus Xiphinematobacter sp. Idaho Grape species 1704307 1 0 16 0 11 414999 class 1 Opitutae 5478 415001 3 order 2087 0 0 1 1 Puniceicoccaceae 2087 family 3 415002 4 0 442430 2 genus 2086 Coraliomargarita 1 Coraliomargarita akajimensis 2082 1 395922 species 0 order 415000 7 1 Opitutales 3375 0 31 family 6 134623 Opitutaceae 3344 1 0 16 0 7 Opitutus 1098 1 genus 178440 2 1091 Opitutus terrae species 107709 1 0 0 278955 1 no rank 1258 0 species 1 794903 Opitutaceae bacterium TAV5 1258 972 Lacunisphaera 1 genus 2 1961799 0 8 1 1838286 species Lacunisphaera limnophila 964 0 11 0 1 1051 Verrucomicrobiae 6 203494 class 0 5 order 48461 5 1 Verrucomicrobiales 1040 0 2 family 4 1647988 Akkermansiaceae 1035 1 14 0 1 1033 Akkermansia 3 239934 genus 0 species 239935 1 Akkermansia muciniphila 497 1679444 1 species Akkermansia glycaniphila 522 0 0 no rank 417295 2 1583 1637999 1 species Verrucomicrobia bacterium IMCC26134 709 0 0 Verrucomicrobia bacterium 874 species 2026799 1 1 0 Methylacidiphilae 1020 1 6 1955630 class 0 4 1 1019 Methylacidiphilales order 5 717963 0 1 family 717964 4 Methylacidiphilaceae 1015 1 1014 Methylacidiphilum 1 genus 3 511745 0 2 629 Methylacidiphilum fumariolicum species 591154 1 0 0 383 Methylacidiphilum infernorum species 511746 1 19541 203682 38 phylum 0 Phycisphaerae 2407 1 666505 7 class 13 0 4 666506 order 1588 Phycisphaerales 1 14 0 Phycisphaeraceae 1574 1 3 666507 family 5 0 genus 2 666508 1 1569 Phycisphaera 0 10 0 1559 Phycisphaera mikurensis 547188 1 species 0 order 2483366 2 806 806 2 2483367 family 0 genus 2 2483368 806 0 1940790 1 species Phycisphaerae bacterium L21-RPul-D3 400 0 406 Phycisphaerae bacterium ST-PulAB-D4 species 1941349 1 0 class 2517206 4 4073 0 1127829 4 order 4073 Candidatus Brocadiales 1 12 0 0 1 1 Candidatus Brocadiaceae 4061 family 1127830 3 2 0 2 380738 genus 1 4060 Candidatus Kuenenia species 174633 1 4058 Candidatus Kuenenia stuttgartiensis 0 35 0 203683 27 class Planctomycetia 13061 1 order 11 112 1 5562 Planctomycetales 0 168 42 0 1 Planctomycetaceae 5394 10 126 family 0 1 genus 1936111 2 1 Fuerstia 1120 species 1891926 1 1119 Fuerstia marisgermanicae 0 0 2 genus 1649480 2 1 524 Planctopirus 522 Planctopirus limnophila 120 1 species 0 118 3 genus 1 2684 Planctomyces 15 0 2669 no rank 2 2648843 0 1632864 1 species 1290 Planctomyces sp. SH-PL14 0 0 species 1636152 1 Planctomyces sp. SH-PL62 1379 1 Rubinisphaera 1024 genus 1649490 2 0 13 119 1 species 1011 Rubinisphaera brasiliensis 0 3474 order 7 2691356 0 7 1763524 family Isosphaeraceae 3474 1 20 0 0 25 1 Singulisphaera 1162 genus 466152 2 466153 1 species Singulisphaera acidiphila 1137 0 genus 2 127 902 Isosphaera 1 0 19 0 Isosphaera pallida 883 128 1 species 6 0 2 1763521 genus Paludisphaera 1390 1 0 Paludisphaera borealis 1384 1387353 1 species 0 2655 order 2691354 5 2181 family 4 2691357 0 0 1 genus 123 2 1 1144 Pirellula 0 Pirellula staleyi 1143 species 125 1 2 265488 genus 1 1037 Rhodopirellula 9 0 0 Rhodopirellula baltica 1028 1 265606 species 0 474 family 2691358 1 0 474 genus 1676125 1 474 Thermogutta terrifontis 1 1331910 species 0 1335 3 2691355 order 0 0 3 family 3 1914233 1 1335 Gemmataceae genus 2 113 Gemmata 1332 1 0 32 0 1300 no rank 2622970 1 0 1300 Gemmata sp. SH-PL17 1630693 1 species 0 phylum 3 134625 1081 0 6 Kiritimatiellae 1081 1 class 1921781 3 1075 2 1921782 order 0 0 family 1921783 2 1075 1921784 2 genus 1 1075 Kiritimatiella 9 0 0 species 1 1307763 1066 Kiritimatiella glycovorans 0 5995 phylum 24 204428 0 19 5995 Chlamydiia 1 class 24 204429 0 27 1 4182 Chlamydiales order 14 51291 0 5 4155 Chlamydiaceae 1 family 809 13 4150 12 1113537 no rank 0 0 61 genus 810 12 Chlamydia 4150 1 1 83560 species Chlamydia muridarum 330 0 0 1 83558 species Chlamydia pneumoniae 545 0 species 1 83555 262 Chlamydia abortus Chlamydia caviae 356 1 83557 species 0 1 85991 species 467 Chlamydia pecorum 0 0 Chlamydia felis 375 species 1 83556 83554 1 species 480 Chlamydia psittaci 0 253 Chlamydia suis 83559 1 species 0 0 Chlamydia trachomatis 351 species 813 1 Chlamydia gallinacea 298 species 1 1457153 0 species 1 1457141 372 Chlamydia avium 0 0 5 1 1794 Parachlamydiales order 1963360 9 family 4 92713 1 Parachlamydiaceae 1074 0 6 2 282132 genus 1 450 Candidatus Protochlamydia 2 0 1 389348 species 448 Candidatus Protochlamydia naegleriophila 0 0 618 83551 1 genus 0 1 83552 species 618 Parachlamydia acanthamoebae 0 2 319 Waddliaceae 1 family 92714 2 317 71666 1 genus 0 0 317 Waddlia chondrophila species 1 71667 0 396 family 2 92712 0 1 genus 2 34093 Simkania 396 1 0 1 83561 species Simkania negevensis 395 625 phylum 256845 3 0 0 15 class 1313211 3 Lentisphaeria 625 1 13 0 2 278082 order 610 Victivallales 1 0 no rank 1674876 1 597 1 2094242 species 597 Victivallales bacterium CCUG 44730 0 381 1783270 clade 345008 0 65842 4 phylum 1092 0 4 204430 class 1 1092 Fibrobacteria 2 0 1 Fibrobacterales 1090 order 3 218872 0 2 204431 2 family 1088 0 6 0 1 Fibrobacter 1088 832 2 genus 0 1082 Fibrobacter succinogenes species 833 1 3553 phylum 8 142182 0 Gemmatimonadetes 3553 1 class 219685 8 0 19 order 219686 7 3534 Gemmatimonadales 1 0 26 0 18 family 219687 6 Gemmatimonadaceae 3508 1 2129 Gemmatirosa 1 genus 2 1706036 0 11 0 species 861299 1 2118 Gemmatirosa kalamazoonesis 9 0 173479 3 genus 1 Gemmatimonas 1361 173480 1 species 677 Gemmatimonas aurantiaca 0 species 1379270 1 675 Gemmatimonas phototrophica 0 0 339357 68336 367 clade 3000 8 1134404 phylum 0 10 0 1 Ignavibacteria 3000 8 795747 class 5 0 795748 7 order 1 2990 Ignavibacteriales 0 1 family 3 1334117 1 568 Melioribacteraceae 1 0 Melioribacter 567 1 1134403 2 genus 0 1134405 1 species 566 Melioribacter roseus family 795749 3 1 2417 Ignavibacteriaceae 0 3 795750 2 genus 1 Ignavibacterium 2414 1 0 2413 Ignavibacterium album species 591197 1 0 39 0 976 337 phylum Bacteroidetes 329369 1 9 0 24 117747 class 1 21684 Sphingobacteriia order 23 200666 Sphingobacteriales 21675 1 0 44 65 0 22 84566 family 1 Sphingobacteriaceae 21631 0 84568 1 no rank 3582 3582 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 1986952 1 0 genus 1649482 2 Pseudopedobacter 1547 1 0 13 Pseudopedobacter saltans 1534 1 151895 species 0 2 929509 genus 1422 Solitalea 1 16 0 species 995 1 1406 Solitalea canadensis 0 Mucilaginibacter 3157 1 genus 4 423349 0 31 0 species 1 1550579 Mucilaginibacter gotjawali 1381 0 2617802 1 no rank 750 0 species 1300914 1 Mucilaginibacter sp. PAMC 26640 750 species 1234841 1 Mucilaginibacter sp. BJC16-A31 995 0 0 48 genus 6 28453 5083 Sphingobacterium 1 4 2609468 no rank 4076 0 0 Sphingobacterium sp. B29 971 species 1 1933220 1021 Sphingobacterium sp. G1-14 2003121 1 species 0 1538644 1 species Sphingobacterium sp. ML3W 1256 0 828 Sphingobacterium sp. 21 species 743722 1 0 0 Sphingobacterium mizutaii 959 species 1010 1 59 0 6775 Pedobacter 1 84567 6 genus 0 Pedobacter heparinus 1411 1 984 species 0 species 363852 1 1407 Pedobacter ginsengisoli 0 Pedobacter steynii 1085 species 430522 1 0 no rank 1 2628915 1374 0 1727164 1 species Pedobacter sp. PACM 27299 1374 1439 Pedobacter cryoconitis 188932 1 species 0 7 1937959 class 2506 Saprospiria 1 2 0 0 1 order 6 1936988 1 Saprospirales 2504 0 854 89374 2 family 2 1007 genus 1 854 Saprospira 5 0 0 849 Saprospira grandis species 1 1008 1 0 1 Haliscomenobacteraceae 1649 1937961 3 family Haliscomenobacter 1648 1 genus 2 2349 0 5 1643 Haliscomenobacter hydrossis species 1 2350 0 41 0 6 1100069 order Bacteroidetes Order II. Incertae sedis 2882 1 31 0 5 563843 family Rhodothermaceae 2841 1 0 3 genus 2 29548 944 Rhodothermus 1 941 Rhodothermus marinus species 29549 1 0 737 genus 1 146918 0 0 737 Salinibacter ruber species 1 146919 no rank 1 1196022 1129 0 species 1779382 1 1129 Rhodothermaceae bacterium RA 0 Chitinophagia 7404 1 1853228 16 class 11 0 21 0 15 1853229 order 1 Chitinophagales 7393 0 69 family 14 563835 1 Chitinophagaceae 7372 1332 Flavisolibacter 1 genus 2 398041 0 1 0 1331 Flavisolibacter tropicus species 1492898 1 genus 1 1769012 1188 0 0 1188 1 2636138 no rank 1188 Arachidicoccus sp. BS20 1850526 1 species 0 0 4 1 Niabella 1243 genus 3 379899 1 446683 species 608 Niabella soli 0 0 631 Niabella ginsenosidivorans species 1 1176587 0 3 genus 354354 2 1 1519 Niastella species 354356 1 1516 Niastella koreensis 0 0 3 genus 2 649460 1 635 Filimonas 0 477680 1 species 632 Filimonas lacunae 3 0 3 79328 genus 1 1386 Chitinophaga 1 79329 species 734 Chitinophaga pinensis 0 species 2029983 1 649 Chitinophagaceae bacterium 13 0 0 49 class 200643 70 1 26802 Bacteroidia 1 Bacteroidales 21374 57 171549 order 94 0 0 2 2005523 family 1041 Paludibacter 1041 1 genus 346096 2 0 1 0 species 1 185300 Paludibacter propionicigenes 1040 0 no rank 333046 5 4040 0 8 1 1892 Candidatus Azobacteroides genus 2 511434 species 511435 1 Candidatus Azobacteroides pseudotrichonymphae 1884 0 2148 genus 909656 3 0 0 1 821 species 521 Bacteroides vulgatus 571 Bacteroides dorei 357276 1 species 0 0 species 376805 1 Bacteroides salanitronis 1056 1 0 1776 Dysgonamonadaceae 1 2005520 7 family 2 1784836 genus 1 910 Fermentimonas 5 0 0 Fermentimonas caenicola 905 species 1562970 1 1 Petrimonas 363 2 307628 genus 3 0 360 Petrimonas mucosa species 1 1642646 0 2 0 502 Proteiniphilum 1 2 294702 genus 0 1 1642647 species 500 Proteiniphilum saccharofermentans 12 0 5126 Bacteroidaceae 1 11 815 family 43 0 1 Bacteroides 5114 10 816 genus Bacteroides caecimuris 474 1796613 1 species 0 612 Bacteroides cellulosilyticus species 1 246787 0 28119 1 species Bacteroides zoogleoformans 323 0 568 Bacteroides heparinolyticus species 28113 1 0 species 1 818 Bacteroides thetaiotaomicron 663 0 817 1 species Bacteroides fragilis 1069 0 0 397 Bacteroides helcogenes 290053 1 species 1 47678 species Bacteroides caccae 409 0 0 556 Bacteroides ovatus species 28116 1 0 672 family 2 1853231 0 8 genus 283168 2 672 Odoribacter 1 28118 1 species Odoribacter splanchnicus 664 0 no rank 1 185291 407 0 Bacteroidales bacterium CF 407 1400053 1 species 0 322 2 2005519 family 0 genus 2 397864 1 Barnesiella 322 0 2 Barnesiella viscericola 320 1 397865 species 0 0 1 1 Porphyromonadaceae 901 family 171551 4 8 0 900 Porphyromonas 1 836 3 genus 0 species 28123 1 Porphyromonas asaccharolytica 296 1 837 species Porphyromonas gingivalis 596 0 Prevotellaceae 4300 1 family 171552 11 0 12 0 56 1 Prevotella 4288 genus 838 10 species 1 1177574 Prevotella jejuni 368 0 238 Prevotella denticola 1 28129 species 0 0 1 2638335 no rank 593 593 Prevotella sp. oral taxon 299 652716 1 species 0 0 589436 1 species 347 Prevotella fusca 234 Prevotella enoeca species 76123 1 0 species 1 28132 413 Prevotella melaninogenica 0 Prevotella intermedia 1182 1 28131 species 0 Prevotella ruminicola 505 1 839 species 0 352 Prevotella dentalis species 1 52227 0 5 0 1931 Tannerellaceae 1 6 2005525 family 0 9 genus 375288 3 1 Parabacteroides 1058 species 823 1 530 Parabacteroides distasonis 0 519 2649774 1 no rank 0 0 2025876 1 species Parabacteroides sp. CT06 519 0 genus 195950 2 868 476 2620507 1 no rank 0 Tannerella sp. oral taxon HOT-286 476 species 712710 1 0 species 1 28112 Tannerella forsythia 392 0 764 Rikenellaceae 1 family 5 171550 0 2 1 Alistipes 380 239759 2 genus 5 0 0 214856 1 species 375 Alistipes finegoldii 382 Mucinivorans 1 2 1611681 genus 8 0 0 Mucinivorans hirudinis 374 1 1433126 species 1 Marinilabiliales 5379 12 1970189 order 22 0 0 1 family 1471398 3 1508 Prolixibacteraceae 1 genus 2 1471399 1507 Draconibacterium 1 0 12 0 1495 Draconibacterium orientale 1168034 1 species 1 0 1 1692 Marinifilaceae 2 1573805 family 1691 2060722 1 genus 0 0 Marinifilaceae bacterium SPP2 1691 species 1 1717717 1108 Marinilabiliaceae 1 3 558415 family 6 0 2 1193324 genus Alkalitalea 1102 1 6 0 0 1 889453 species Alkalitalea saponilacus 1096 1 0 3 1970190 family 1049 Salinivirgaceae 1 2 1970191 genus 1 Salinivirga 1048 2 0 0 Salinivirga cyanobacteriivorans 1046 1 1307839 species 0 70 1 50740 Cytophagia class 768503 61 order 768507 60 Cytophagales 50670 1 0 145 3 0 3 1853234 family Persicobacteraceae 1629 1 22 0 2 59740 genus Persicobacter 1626 1 1604 2664020 1 no rank 0 1085624 1 species Persicobacter sp. JZB09 1604 0 0 34 Cytophagaceae 11978 1 family 17 89373 1 4198 Spirosoma 107 6 genus 34 0 0 species 1 1379870 Spirosoma radiotolerans 925 0 species 1 2057025 983 Spirosoma sp. HA7 0 species 564064 1 560 Spirosoma rigui 1 1178516 species Spirosoma montaniterrae 753 0 0 Spirosoma aerolatum 943 1 1211326 species genus 120831 2 1 Dyadobacter 945 0 15 0 1 94254 species Dyadobacter fermentans 930 8 0 2 105 genus 1 Runella 3856 Runella slithyformis 3848 106 1 species 0 1 1561 Cytophaga 978 2 genus 19 0 985 1 species 1542 Cytophaga hutchinsonii 0 Fibrella 473 1 2 861914 genus 4 0 469 2620963 1 no rank 0 469 Fibrella sp. ES10-3-2-2 species 1 1834519 0 4 0 319458 2 genus 1 Leadbetterella 911 316068 1 species Leadbetterella byssophila 907 0 2939 Bernardetiaceae 1 3 1937968 family 18 0 0 28 genus 1937972 2 Bernardetia 2921 1 0 2893 Bernardetia litoralis 1 999 species 40 0 1 10034 Hymenobacteraceae 1853232 16 family 3051 Rufibacter 1 genus 4 1379908 0 24 Rufibacter tibetensis 1219 species 1 512763 0 no rank 2639626 2 1808 0 0 Rufibacter sp. DG15C 764 species 1379909 1 Rufibacter sp. DG31D 1044 species 1 1379910 0 0 56 Hymenobacter 5692 1 genus 89966 8 1 1446467 species 802 Hymenobacter swuensis 0 2615202 5 no rank 4144 0 372 Hymenobacter sp. DG25A species 1385663 1 0 0 444 Hymenobacter sp. DG25B 1 1385664 species 0 species 1356852 1 742 Hymenobacter sp. APR13 1245 Hymenobacter sp. PAMC 26628 1484118 1 species 0 0 Hymenobacter sp. PAMC 26554 1341 1484116 1 species 0 690 Hymenobacter sedentarius species 1411621 1 12 0 323449 3 genus 1 1251 Pontibacter 0 Pontibacter akesuensis 545 species 388950 1 0 400092 1 species Pontibacter korlensis 694 Cyclobacteriaceae 6999 1 10 563798 family 26 0 1 Algoriphagus 1079 genus 246875 2 0 6 1073 Algoriphagus sp. M8-2 species 1727163 1 0 17 0 Cyclobacterium 3118 1 3 68288 genus 0 1484 Cyclobacterium marinum species 104 1 species 320787 1 Cyclobacterium amurskyense 1617 0 0 22 genus 232244 2 1 Belliella 1875 species 1 232259 1853 Belliella baltica 0 genus 2 390846 901 Echinicola 1 0 17 390884 1 species Echinicola vietnamensis 884 0 1095 Amoebophilaceae 1 4 1501348 family 5 0 1 Candidatus Amoebophilus 741 281119 2 genus 4 0 1 281120 species 737 Candidatus Amoebophilus asiaticus 0 0 273135 1 genus 349 349 1 2641185 no rank 0 349 Cardinium endosymbiont of Encarsia pergandiella species 1 249402 0 2186 family 2762301 2 0 0 13 1 Marivirga 2186 genus 2 869806 1006 1 species 2173 Marivirga tractuosa 0 0 12 1 Flammeovirgaceae 13665 family 200667 4 0 10300 340671 1 no rank 0 1257021 1 species 10300 Flammeovirgaceae bacterium 311 20 0 2 59739 genus 3353 Flammeovirga 1 3333 no rank 2637820 1 0 0 3333 Flammeovirga sp. MY04 species 1191459 1 133 0 117743 152 class 217312 Flavobacteriia 1 1 Flavobacteriales 217179 151 200644 order 236 0 no rank 313602 3 2981 0 1 2326 Candidatus Sulcia genus 2 336809 0 4 336810 1 species Candidatus Sulcia muelleri 2322 0 0 1940138 1 genus 655 species 1 1415657 655 Candidatus Walczuchella monophlebidarum 0 0 26548 22 2762318 family 1 Weeksella 1010 2 1013 genus 2 0 species 1 1014 Weeksella virosa 1008 0 0 13611 no rank 2782232 10 0 691 2782228 1 genus 0 species 536441 1 691 Chryseobacterium taklimakanense 98 0 9 59732 genus 1 12920 Chryseobacterium 0 Chryseobacterium piperi 1413 1 558152 species 0 1 1265445 species 512 Chryseobacterium camelliae no rank 2593645 3 4113 0 0 1077 Chryseobacterium sp. IHB B 17019 1 1721091 species 0 Chryseobacterium sp. T16E-39 1531 species 2015076 1 1505 Chryseobacterium sp. StRB126 878220 1 species 0 Chryseobacterium gallinarum 1075 1324352 1 species 0 1685010 1 species 3298 Chryseobacterium glaciei 0 species 253 1 Chryseobacterium indologenes 2411 0 91 0 Elizabethkingia 8978 1 308865 6 genus species 1756149 1 1427 Elizabethkingia genomosp. 3 0 238 1 species Elizabethkingia meningoseptica 1475 0 0 1 1117645 species 2988 Elizabethkingia anophelis 0 species 172045 1 Elizabethkingia miricola 1858 0 species 1756150 1 Elizabethkingia genomosp. 4 1139 1 Riemerella 2079 34084 2 genus 7 0 34085 1 species Riemerella anatipestifer 2072 0 Ornithobacterium 870 1 genus 2 28250 0 5 0 Ornithobacterium rhinotracheale 865 1 28251 species family 1 246874 11 Cryomorphaceae 0 3 1853230 family Crocinitomicaceae 1557 1 1 0 10 0 1556 Fluviicola 1 2 332102 genus 1546 Fluviicola taffensis 1 191579 species 0 12 0 1 8961 Blattabacteriaceae 10 39782 family 34098 9 genus 1 8949 Blattabacterium 64 0 no rank 6 2647581 6588 0 1231 Blattabacterium sp. (Nauphoeta cinerea) 1 1316444 species 0 0 Blattabacterium sp. (Mastotermes darwiniensis) 968 1 39768 species 1186051 1 species Blattabacterium sp. (Blaberus giganteus) 1197 0 species 1 624186 Blattabacterium sp. (Blattella germanica) 1202 0 1000 Blattabacterium sp. (Periplaneta americana) species 1 367488 0 0 990 Blattabacterium sp. (Blatta orientalis) species 367806 1 1 164514 species 1109 Blattabacterium punctulatus 0 0 1188 Blattabacterium cuenoti 1653831 1 species 752 0 Flavobacteriaceae 174328 1 106 49546 family 1 Tenacibaculum 12574 genus 104267 5 0 22 1 669041 species 2602 Tenacibaculum dicentrarchi 0 0 2382 Tenacibaculum maritimum species 1 107401 3999 Tenacibaculum jejuense species 1 584609 0 0 species 1850252 1 3569 Tenacibaculum todarodis genus 1 143222 1780 0 0 no rank 1 2633436 1780 0 1729720 1 species 1780 Salegentibacter sp. T436 1 0 Aureitalea 1029 1 2 1176327 genus 1028 1 2636237 no rank 0 1028 Aureitalea sp. RR4-38 species 1 2094025 0 2 336276 genus 2681 Olleya 1 1 0 0 1 2615019 no rank 2680 0 Olleya sp. Bg11-27 2680 1 2058135 species 417127 1 genus 2820 0 0 2820 Zunongwangia profunda 1 398743 species 0 2 1 2773 Siansivirga genus 1204360 2 Siansivirga zeaxanthinifaciens 2771 species 762954 1 0 0 3372 261827 1 genus 1736674 1 species Algibacter alginicilyticus 3372 0 0 4007 1 2700084 genus 0 species 1850246 1 4007 Lutibacter sp. LPB0138 0 1 Seonamhaeicola 3108 1 genus 1649495 2 1 2622645 no rank 3107 0 Seonamhaeicola sp. S2-3 3107 species 1 1936081 0 0 3377 no rank 61432 2 species 1 1150389 Flavobacteriaceae bacterium UJ101 2769 0 species 531844 1 608 Flavobacteriaceae bacterium 3519-10 0 Lutibacter 3698 1 genus 2 358023 0 6 0 species 1 1622118 Lutibacter profundi 3692 1 5617 Myroides genus 76831 5 0 110 species 76832 1 Myroides odoratimimus 1369 0 0 2586 2642485 2 no rank 0 1 1458492 species 1292 Myroides sp. ZB35 0 Myroides sp. A21 1294 1583100 1 species species 1 480520 Myroides profundi 1552 0 286104 3 genus 1 Winogradskyella 6897 16 0 0 2 2615021 no rank 6881 0 3563 Winogradskyella sp. PG-2 754409 1 species 3318 Winogradskyella sp. J14-2 species 1936080 1 0 Dokdonia 5391 1 genus 326319 4 0 32 0 3330 no rank 2 2615033 1619 Dokdonia sp. MED134 313590 1 species 0 0 species 983548 1 Dokdonia sp. 4H-3-7-5 1711 0 1 326320 species 2029 Dokdonia donghaensis 1802 genus 153265 1 0 101385 1 species Aequorivita sublithincola 1802 0 genus 1 393005 2058 0 0 1 2069432 species Tamlana sp. UJ94 2058 0 genus 83612 1 2295 2295 Psychroflexus torquis 57029 1 species 0 Capnocytophaga 12372 1 15 1016 genus 109 0 0 1 1017 species Capnocytophaga gingivalis 637 species 1 1019 Capnocytophaga sputigena 1761 0 620 Capnocytophaga haemolytica species 45243 1 0 578 Capnocytophaga leadbetteri 1 327575 species 0 0 1848904 1 species 889 Capnocytophaga stomatis 6 2640652 no rank 4707 0 Capnocytophaga sp. H2931 918 1945657 1 species 0 943 Capnocytophaga sp. oral taxon 878 species 1 1316596 0 0 538 Capnocytophaga sp. oral taxon 323 1705617 1 species 0 1945658 1 species 966 Capnocytophaga sp. H4358 0 1 209053 species Capnocytophaga sp. ChDC OS43 684 658 Capnocytophaga sp. oral taxon 864 species 1316593 1 0 species 1018 1 Capnocytophaga ochracea 591 0 0 1110 Capnocytophaga cynodegmi 28189 1 species 28188 1 species 1370 Capnocytophaga canimorsus 0 0 141 genus 52959 6 1 18723 Polaribacter 0 4104 Polaribacter vadi species 1 1774273 0 species 1 996801 Polaribacter reichenbachii 4256 0 10222 no rank 196858 3 3478 Polaribacter sp. BM10 species 1529069 1 0 0 Polaribacter sp. ALD11 2839 1 2058137 species 0 species 1 313598 Polaribacter sp. MED152 3905 Maribacter 8501 1 252356 5 genus 89 0 0 species 1 1178778 1214 Maribacter cobaltidurans 0 2615042 3 no rank 7198 Maribacter sp. 1_2014MBL_MicDiv 2836 1 1644130 species 0 0 Maribacter sp. HTCC2170 1984 313603 1 species species 1 1836467 2378 Maribacter sp. T28 0 104264 4 genus 9205 Cellulophaga 1 32 0 0 3222 Cellulophaga lytica species 979 1 0 2993 Cellulophaga algicola species 59600 1 species 76594 1 Cellulophaga baltica 2958 0 Croceibacter 2470 1 genus 2 216431 0 5 313588 1 species Croceibacter atlanticus 2465 0 0 12 genus 111500 3 1 Muricauda 1851 1179 Muricauda ruestringensis 1 111501 species 0 0 Muricauda lutaonensis 660 516051 1 species 0 149 genus 363408 5 7343 Nonlabens 1 no rank 2615035 2 3516 0 Nonlabens sp. MIC269 1835 species 1476901 1 0 1681 Nonlabens sp. MB-3u-79 species 2058134 1 0 Nonlabens dokdonensis 1881 species 328515 1 0 0 1797 Nonlabens sediminis species 319236 1 1 19831 Flavobacterium genus 9 237 0 51 0 species 986 1 4740 Flavobacterium johnsoniae 3907 Flavobacterium columnare species 1 996 0 1754 Flavobacterium branchiophilum species 1 55197 0 1 1306519 species 1768 Flavobacterium commune 0 1 96345 species 1898 Flavobacterium psychrophilum 0 1902 Flavobacterium gilvum species 1492737 1 0 1274 Flavobacterium crassostreae 1 1763534 species 0 0 1 312277 species Flavobacterium indicum 2537 0 1 1 2663 Wenyingzhuangia genus 1518147 2 0 Wenyingzhuangia fucanilytica 2662 species 1790137 1 0 6 genus 225842 3 1 3998 Formosa 3992 no rank 2 2644710 0 Formosa sp. Hel1_33_131 1762 species 1336794 1 0 0 species 1336795 1 Formosa sp. Hel3_A1_48 2230 genus 389486 1 1173 0 1 2648869 no rank 1173 0 Sediminicola sp. YIK13 1173 species 1 1453352 0 1 Lacinutrix 9300 genus 291183 4 0 98 Lacinutrix venerupis 2997 species 1 1486034 0 2 2647285 no rank 6205 0 0 Lacinutrix sp. 5H-3-7-4 3005 1 983544 species 0 2057808 1 species 3200 Lacinutrix sp. Bg11-31 genus 2 1209327 2483 Flavivirga 1 0 2 2481 Flavivirga eckloniae 1803846 1 species 0 genus 1 178469 1507 0 616991 1 species Arenibacter algicola 1507 0 0 genus 1 252306 543 species 1 252307 Robiginitalea biformata 543 0 917 112040 1 genus 0 0 917 Zobellia galactanivorans 63186 1 species Gramella 5417 1 292691 5 genus 19 0 0 Gramella sp. SH35 1239 species 2126553 1 0 Gramella flava 933 1486245 1 species 0 species 1 411153 1704 Gramella forsetii 1913577 1 species Gramella sp. LPB0144 1522 0 0 7 Ichthyobacteriaceae 1209 1 family 1755828 3 41 0 1755829 2 genus 1 Ichthyobacterium 1202 0 1161 Ichthyobacterium seriolicida species 1 242600 0 2 1333713 family 1348 genus 267986 2 Owenweeksia 1348 1 0 29 Owenweeksia hongkongensis 1319 species 253245 1 0 6988 1090 22 phylum 0 Chlorobia 6988 1 class 22 191410 0 27 order 21 191411 6961 Chlorobiales 1 0 48 0 74 1 Chlorobiaceae 6913 family 20 191412 genus 2 100715 1 623 Chloroherpeton 0 3 1 100716 species Chloroherpeton thalassium 620 0 0 3621 8 274493 no rank genus 1099 3 1 Pelodictyon 725 0 6 0 species 34090 1 452 Pelodictyon phaeoclathratiforme species 1100 1 267 Pelodictyon luteolum 0 0 51 2896 Chlorobium 1 genus 5 1091 Chlorobium phaeobacteroides 1362 species 1 1096 0 0 species 1 1094 Chlorobium phaeovibrioides 317 0 species 337090 1 Chlorobium chlorochromatii 473 0 Chlorobium limicola 693 species 1 1092 0 56 genus 1101 5 1484 Prosthecochloris 1 1095 2632826 3 no rank 0 0 485 Prosthecochloris sp. CIB 2401 1868325 1 species 0 289 Prosthecochloris sp. GSB1 1 281093 species species 1974213 1 Prosthecochloris sp. HL-130-GSB 321 0 Prosthecochloris aestuarii 333 1 1102 species 0 73 0 256319 4 genus 1 Chlorobaculum 1111 species 1 274537 Chlorobaculum limnaeum 400 0 0 species 1 274539 Chlorobaculum parvum 299 1 1097 species 339 Chlorobaculum tepidum 0 0 456828 2 phylum 1006 genus 456826 2 1006 Candidatus Cloacimonas 1 0 2 0 species 456827 1 1004 Candidatus Cloacimonas acidaminovorans clade 1710 1783272 10777987 0 1 Tenericutes 61444 102 544448 phylum 8 0 0 1856 2 713063 no rank 0 1911683 1 species 825 Tenericutes bacterium MZ-XQ Tenericutes bacterium MO-XQ 1031 1 1911684 species 0 1040 2799557 2 no rank 0 0 7 Candidatus Izimaplasma 1040 1 genus 2 1912503 0 1033 2624196 1 no rank Candidatus Izimaplasma sp. HR1 1033 1 1541959 species 0 155 0 58540 Mollicutes 1 31969 97 class order 186329 13 5454 Acholeplasmatales 1 0 15 1 5439 Acholeplasmataceae 2146 12 family 22 0 genus 33926 6 1 2391 Candidatus Phytoplasma 0 27 species group 1 85630 554 0 1 37692 species Candidatus Phytoplasma mali 554 0 0 species group 85632 1 449 0 Candidatus Phytoplasma australiense 449 59748 1 species 85620 3 species group 1361 0 species 100379 1 Onion yellows phytoplasma 510 0 0 species 229545 1 409 Aster yellows witches'-broom phytoplasma 0 442 Maize bushy stunt phytoplasma 1 202462 species genus 2147 5 Acholeplasma 3026 1 0 12 0 Acholeplasma oculi 808 35623 1 species 0 species 1 61635 472 Acholeplasma brassicae species 1 2148 Acholeplasma laidlawii 724 0 38986 1 species Acholeplasma palmae 1010 0 28375 Mycoplasmatales 1 order 44 2085 0 105 65 0 43 2092 family 1 Mycoplasmataceae 28270 1 19580 Mycoplasma 2093 27 genus 235 0 species 51365 1 836 Mycoplasma yeatsii 0 0 1038 Mycoplasma hominis species 1 2098 508 1 2683645 no rank 0 0 508 Mycoplasma sp. (ex Biomphalaria glabrata) species 1 1749074 535 Mycoplasma gallisepticum species 1 2096 0 Mycoplasma wenyonii 147 species 65123 1 0 species 29501 1 Mycoplasma haemofelis 2045 0 0 1644 Mycoplasma hyopneumoniae species 2099 1 1 29554 species Mycoplasma canadense 574 0 0 species 2123 1 Mycoplasma putrefaciens 877 884 Mycoplasma penetrans 28227 1 species 0 0 species 984991 1 Mycoplasma parvum 443 species 1 57372 Mycoplasma suis 330 0 0 2128 1 species 367 Mycoplasma flocculare species 1 45362 625 Mycoplasma bovoculi 0 0 860 Mycoplasma mobile 2118 1 species species 50052 1 Mycoplasma crocodyli 655 0 0 Mycoplasma genitalium 334 species 2097 1 Mycoplasma haemocanis 676 136241 1 species 0 species 1 2111 Mycoplasma arthritidis 339 0 Mycoplasma hyorhinis 670 1 2100 species 0 species 171632 1 Mycoplasma ovis 180 0 144 Mycoplasma pneumoniae 1 2104 species 0 0 species group 3 656088 4193 2102 1 species 2031 Mycoplasma mycoides 0 0 2105 1 species Mycoplasma leachii 1008 0 1154 Mycoplasma capricolum 2095 1 species 0 species 1 86660 Mycoplasma dispar 441 7426 2767358 12 genus 0 1 2094 species Mycoplasma arginini 588 0 species 171284 1 Mycoplasma cynos 672 0 0 Mycoplasma bovigenitalium 441 2112 1 species 0 species 2107 1 632 Mycoplasma pulmonis 0 Mycoplasma californicum 385 species 1 2113 0 Mycoplasma fermentans 618 species 1 2115 0 2110 1 species Mycoplasma agalactiae 689 species 1 29555 660 Mycoplasma canis 0 0 1 29553 species 478 Mycoplasma bovirhinis 443 Mycoplasma synoviae species 1 2109 0 0 species 1 28903 Mycoplasma bovis 1365 0 455 Mycoplasma pullorum 48003 1 species 1 1199 Ureaplasma 3 2129 genus 4 0 1 134821 species 622 Ureaplasma parvum 0 0 1 2130 species 573 Ureaplasma urealyticum 1 24556 Entomoplasmatales 186328 39 order 42 0 34 0 16964 Spiroplasmataceae 1 2131 24 family 1 Spiroplasma 16930 genus 23 2132 0 196 1188 Spiroplasma litorale species 216942 1 0 1 2133 species 639 Spiroplasma citri 0 0 species 216946 1 Spiroplasma turonicum 1009 0 1046 Spiroplasma floricola species 216937 1 452 Spiroplasma mirum 2144 1 species 0 Spiroplasma clarkii 729 2139 1 species 0 0 1 47834 species Spiroplasma kunkelii 752 Spiroplasma corruscae 806 species 216934 1 0 0 216933 1 species 552 Spiroplasma chrysopicola species 216938 1 Spiroplasma helicoides 722 0 0 Spiroplasma atrichopogonis 461 1 1114980 species 0 species 1 216945 555 Spiroplasma syrphidicola 955 Spiroplasma culicicola species 216935 1 0 species 1 2145 Spiroplasma taiwanense 1100 0 0 Spiroplasma sabaudiense 575 1 216944 species 0 species 315358 1 Spiroplasma eriocheiris 533 0 Spiroplasma apis 627 species 2137 1 0 Spiroplasma monobiae 641 species 1 2136 1029 Spiroplasma cantharicola species 362837 1 0 0 2637901 2 no rank 1313 1 1898044 species Spiroplasma sp. TU-14 656 0 1914410 1 species Spiroplasma sp. NBRC 100390 657 0 1 216936 species 1050 Spiroplasma diminutum 0 1 Entomoplasmataceae 7550 14 33925 family 20 0 0 108 genus 46239 8 1 Mesoplasma 5349 0 Mesoplasma lactucae 509 1 138853 species 665 Mesoplasma chauliocola 216427 1 species 0 2149 1 species Mesoplasma entomophilum 683 0 0 species 1 324078 Mesoplasma coleopterae 669 0 Mesoplasma florum 1527 1 2151 species 0 species 1 225999 Mesoplasma syrphidae 573 0 species 219745 1 Mesoplasma tabanidae 615 0 31 genus 46238 5 1 Entomoplasma 2181 Entomoplasma luminosum 507 1 214888 species 0 0 species 74700 1 Entomoplasma freundtii 233 0 Entomoplasma somnilux 701 1 215578 species 0 81459 1 species 709 Entomoplasma melaleucae Firmicutes 532805 1 711 1239 phylum 129 0 1 Limnochordia 503 class 1676648 5 0 4 order 4 1676649 Limnochordales 499 1 0 3 8 0 Limnochordaceae 496 1 1676650 3 family 0 10 genus 2 1676651 488 Limnochorda 1 1555112 1 species 478 Limnochorda pilosa 0 1 Erysipelotrichia 2249 526524 9 class 5 0 1 2244 Erysipelotrichales order 8 526525 0 12 0 9 family 128827 7 1 Erysipelotrichaceae 2232 0 650 genus 1 191303 0 650 2638206 1 no rank Turicibacter sp. H121 650 1712675 1 species 0 genus 1729679 1 221 0 0 1 1702221 species 221 Faecalibaculum rodentium no rank 1 544447 384 0 0 species 1 1834207 384 Erysipelotrichaceae bacterium I46 2 0 1 968 Erysipelothrix 3 1647 genus 452 Erysipelothrix larvae 1 1514105 species 0 1648 1 species 514 Erysipelothrix rhusiopathiae 0 0 198 no rank 1 33974 genus 1930845 1 198 0 1 1871025 species 198 Ndongobacter massiliensis 0 174 0 214 186801 class Clostridia 185870 1 37 68295 order Thermoanaerobacterales 20582 1 43 0 543371 13 family 1 Thermoanaerobacterales Family III. Incertae Sedis 9307 5 0 10 0 28895 3 genus 2300 Thermoanaerobacterium 1 Thermoanaerobacterium thermosaccharolyticum 1527 1 1517 species 0 species 1 29329 Thermoanaerobacterium xylanolyticum 763 0 1 7002 Caldicellulosiruptor 44000 9 genus 118 0 0 Caldicellulosiruptor saccharolyticus 964 1 44001 species 875 Caldicellulosiruptor hydrothermalis species 413888 1 0 Caldicellulosiruptor lactoaceticus 717 species 52766 1 0 species 1 717609 Caldicellulosiruptor obsidiansis 897 0 0 species 1 55205 916 Caldicellulosiruptor owensensis 0 species 31899 1 Caldicellulosiruptor bescii 856 0 species 413889 1 990 Caldicellulosiruptor kronotskyensis 1 52765 species Caldicellulosiruptor kristjanssonii 669 0 1 Thermoanaerobacteraceae 9808 family 186814 19 0 15 1 Thermoanaerobacter 7720 genus 1754 9 0 317 908 Thermoanaerobacter italicus 1 108150 species 0 0 837 Thermoanaerobacter kivui 1 2325 species Thermoanaerobacter mathranii 827 1 583357 species 0 921 Thermoanaerobacter pseudethanolicus 496866 1 species 0 0 species 29323 1 921 Thermoanaerobacter brockii 0 Thermoanaerobacter wiegelii 1027 species 46354 1 1962 no rank 2 2636821 0 0 Thermoanaerobacter sp. X513 1013 species 573062 1 0 949 Thermoanaerobacter sp. X514 399726 1 species 129957 2 genus 587 Carboxydothermus 1 5 0 Carboxydothermus hydrogenoformans 582 129958 1 species 0 no rank 42857 4 438 0 Moorella 275 1 genus 2 44260 0 3 0 species 1525 1 272 Moorella thermoacetica 0 1 163 Ammonifex 1 genus 2 42837 0 species 42838 1 Ammonifex degensii 162 2 249529 genus 1 Caldanaerobacter 757 1 0 756 Caldanaerobacter subterraneus species 1 911092 0 genus 1 140458 291 0 0 85874 1 species Thermacetogenium phaeum 291 0 319 family 543372 1 252965 1 genus 319 0 319 Mahella australiensis 252966 1 species 0 1 1105 Thermodesulfobiaceae 227387 3 family 1 0 2 227388 genus 1 Thermodesulfobium 1104 1 0 0 1103 Thermodesulfobium narugense 184064 1 species order 157 186802 156287 Clostridiales 1 0 413 8 0 5 68298 family 1 Syntrophomonadaceae 738 2 0 2 862 genus 1 Syntrophomonas 510 0 Syntrophomonas wolfei 508 1 863 species 129001 2 genus 220 Syntrophothermus 1 2 0 1 86170 species Syntrophothermus lipocalidus 218 0 0 59 104062 Clostridiaceae 1 family 40 31979 114627 3 genus 1 2191 Alkaliphilus 8 0 Alkaliphilus oremlandii 792 species 461876 1 0 0 208226 1 species 1391 Alkaliphilus metalliredigens Mordavella 3 1 1981033 genus 0 0 487 genus 30 1485 1 97162 Clostridium 0 species 1 36745 4108 Clostridium saccharoperbutylacetonicum 0 Clostridium sporogenes 2172 species 1 1509 0 species 1 1216932 Clostridium bornimense 2429 1 1519 species 1523 Clostridium tyrobutyricum 0 1548 1 species Clostridium scatologenes 2620 0 0 1561 1 species 3583 Clostridium baratii Clostridium acetobutylicum 1937 species 1 1488 0 1 84023 species 1706 Clostridium autoethanogenum 0 species 1538 1 Clostridium ljungdahlii 1832 0 0 Clostridium cellulovorans 2015 1493 1 species Clostridium beijerinckii 5146 1 1520 species 0 Clostridium argentinense 2420 1 29341 species 0 0 Clostridium saccharobutylicum 5626 1 169679 species 0 species 1542 1 1822 Clostridium novyi 1 1492 species 3679 Clostridium butyricum 0 1099 2614128 2 no rank 0 1042156 1 species 223 Clostridium sp. SY8519 0 0 species 1 755731 Clostridium sp. BNL1100 876 species 1 1513 Clostridium tetani 2467 0 0 2256 Clostridium estertheticum 238834 1 species species 1 46867 Clostridium chauvoei 1921 0 2904 Clostridium carboxidivorans 1 217159 species 0 0 species 1 1534 Clostridium kluyveri 2420 species 1497 1 Clostridium formicaceticum 1341 0 1 1491 species Clostridium botulinum 25492 0 species 1 1501 4424 Clostridium pasteurianum 0 0 species 84022 1 1390 Clostridium aceticum 0 394958 1 species Clostridium taeniosporum 2238 1502 1 species 4283 Clostridium perfringens 0 0 Clostridium cochlearium 1822 1494 1 species 0 genus 1 390805 1038 species 1424294 1 1038 Geosporobacter ferrireducens 0 Candidatus Arthromitus 3609 1 genus 4 49082 0 46 no rank 2638829 3 3563 0 species 1508644 1 1154 Candidatus Arthromitus sp. SFB-mouse-NL 0 0 49118 1 species 1152 Candidatus Arthromitus sp. SFB-mouse species 1 1041504 Candidatus Arthromitus sp. SFB-rat-Yit 1257 0 family 2 216572 372 0 2 459786 genus 1 Oscillibacter 372 1 0 Oscillibacter valericigenes 371 1 351091 species 0 1 558 Symbiobacteriaceae 543349 3 family 7 0 0 4 genus 2733 2 1 551 Symbiobacterium 0 Symbiobacterium thermophilum 547 species 2734 1 0 2 family 990719 3 1 Christensenellaceae 244 2 0 990721 2 genus Christensenella 242 1 0 240 Christensenella massiliensis species 1805714 1 3 0 2 31984 family Heliobacteriaceae 334 1 331 2697 1 genus 0 0 331 Heliobacterium modesticaldum 1 35701 species 0 family 11 2304686 5466 2589 genus 2304692 3 0 288965 1 species 961 [Clostridium] clariflavum 0 1 1515 species Ruminiclostridium thermocellum 636 0 0 species 1 1677857 Herbivorax saccincola 992 2304691 1 genus 350 0 species 1 1510 350 [Clostridium] stercorarium 0 2305130 1 no rank 232 0 0 1834198 1 species Ruminiclostridium sp. KB18 232 genus 1637257 1 238 0 Mageeibacillus indolicus 238 species 884684 1 0 1 Fastidiosipila 639 genus 236752 2 0 4 635 Fastidiosipila sanguinis species 1 236753 0 37 0 2 1508657 genus 1 Ruminiclostridium 785 [Clostridium] cellulolyticum 748 1521 1 species 0 0 1 2304693 genus 633 0 1 84032 species [Clostridium] thermosuccinogenes 633 0 35 2410 Ruminococcaceae 1 family 541000 12 1 1890281 genus 2 Herbivorax 0 0 1 genus 1263 3 1 Ruminococcus 770 0 Ruminococcus albus 384 1 1264 species 0 1160721 1 species 385 Ruminococcus bicirculans 253238 1 genus 353 0 0 species 253239 1 Ethanoligenens harbinense 353 4 0 1 Flavonifractor 449 2 946234 genus 0 292800 1 species Flavonifractor plautii 445 164 2305133 1 no rank 0 0 164 Ruminococcaceae bacterium CPB6 1 1572656 species 0 4 genus 2 216851 349 Faecalibacterium 1 345 Faecalibacterium prausnitzii 853 1 species 0 0 no rank 552397 1 288 1 29343 species 288 [Clostridium] cellulosi 0 1 Lachnospiraceae 17161 family 186803 25 0 27 636 Herbinix 1 1663717 2 genus 3 0 0 633 Herbinix luporum 1 1679721 species 8 0 1 Lachnoclostridium 2037 1506553 4 genus 0 species 66219 1 Lachnoclostridium phytofermentans 1249 0 453 2608895 1 no rank species 1834196 1 Lachnoclostridium sp. YL32 453 0 Lachnoclostridium phocaeense 327 species 1 1871021 0 0 2569097 1 genus 2381 0 species 1 39488 2381 [Eubacterium] hallii 441 2719313 1 genus 0 0 1 208479 species [Clostridium] bolteae 441 0 4 genus 830 3 1 2381 Butyrivibrio 0 species 43305 1 1296 Butyrivibrio proteoclasticus species 1 185008 Butyrivibrio hungatei 1081 0 1 Anaerostipes 730 2 207244 genus 1 0 649756 1 species 729 Anaerostipes hadrus 0 no rank 186928 2 714 0 0 712991 1 species Lachnospiraceae bacterium oral taxon 500 279 0 [Eubacterium] rectale 435 species 1 39491 2719231 1 genus 564 0 564 [Clostridium] saccharolyticum 84030 1 species 0 841 1 genus 265 0 0 species 1 301301 265 Roseburia hominis 0 1048 genus 28050 1 1 39485 species [Eubacterium] eligens 1048 0 genus 1 2039240 560 0 0 Anaerotignum propionicum 560 1 28446 species 948 Blautia 1 genus 3 572511 0 3 452 no rank 1 2648079 0 0 452 Blautia sp. YL58 species 1796616 1 0 1322 1 species Blautia hansenii 493 4 0 1 Cellulosilyticum 4429 2 698776 genus 1 29360 species Cellulosilyticum lentocellum 4425 0 1 Peptococcaceae 10344 29 186807 family 26 0 0 genus 2282742 1 604 0 species 1 58138 Desulfotomaculum acetoxidans 604 2 0 51514 2 genus 1 618 Dehalobacterium 51515 1 species Dehalobacterium formicoaceticum 616 0 genus 2 278993 437 Thermincola 1 0 2 435 Thermincola potens 863643 1 species 0 0 genus 2282740 1 770 species 1 102134 Desulfotomaculum gibsoniae 770 0 genus 471826 2 1 313 Candidatus Desulforudis 0 3 species 1 471827 310 Candidatus Desulforudis audaxviator 0 12 0 36853 5 genus Desulfitobacterium 2279 1 0 474 Desulfitobacterium metallireducens 1 142877 species 233055 1 species Desulfitobacterium dichloroeliminans 622 0 0 species 1 49338 591 Desulfitobacterium hafniense 36854 1 species 580 Desulfitobacterium dehalogenans 0 Desulfosporosinus 2185 1 genus 79206 4 0 11 0 Desulfosporosinus acidiphilus 830 885581 1 species 0 species 1 1563 Desulfosporosinus orientis 660 684 Desulfosporosinus meridiei 1 79209 species 0 3 0 1 412 Syntrophobotulus 2 51196 genus Syntrophobotulus glycolicus 409 1 51197 species 0 0 8 968 Dehalobacter 1 genus 56112 4 0 Dehalobacter restrictus 305 1 55583 species 2 2635733 no rank 655 0 0 Dehalobacter sp. DCA 314 species 1147129 1 0 Dehalobacter sp. CF 341 1131462 1 species 1 1732 Desulfotomaculum 5 1562 genus 15 0 species 1565 1 334 Desulfotomaculum nigrificans 0 0 Desulfotomaculum ruminis 407 species 1 1564 1 1833852 species 378 Desulfotomaculum ferrireducens 0 598 Desulfotomaculum reducens 59610 1 species 0 0 538999 8 no rank 2269 0 family 2 543314 869 [Eubacterium] sulci 398 143393 1 species 0 genus 86331 1 471 0 species 114527 1 Mogibacterium diversum 471 0 genus 1392389 2 361 Intestinimonas 1 0 2 species 1 1297617 Intestinimonas butyriciproducens 359 0 family 3 539000 Clostridiales Family XVII. Incertae Sedis 520 1 0 3 0 3 genus 2 73918 517 Thermaerobacter 1 0 species 1 73919 514 Thermaerobacter marianensis 0 519 genus 1 2717089 0 Mordavella sp. Marseille-P3756 519 species 2086584 1 23 0 1 10025 Peptostreptococcaceae 11 186804 family 0 no rank 1 1411023 734 734 Peptostreptococcaceae bacterium oral taxon 929 2081703 1 species 0 44259 1 genus 576 0 0 Filifactor alocis 576 species 143361 1 0 1 Acetoanaerobium 1480 1 genus 2 186831 1479 Acetoanaerobium sticklandii 1 1511 species 0 1 2209 Paeniclostridium genus 2 1849828 0 2 0 1505 1 species Paeniclostridium sordellii 2207 1 0 4650 Clostridioides 1 1870884 2 genus 1 1496 species Clostridioides difficile 4649 0 0 4 genus 2 1481960 Peptoclostridium 353 1 0 1731 1 species 349 Peptoclostridium acidaminophilum Eubacteriaceae 1891 1 family 5 186806 0 10 1 770 Acetobacterium genus 33951 2 0 3 33952 1 species Acetobacterium woodii 767 0 2 1730 genus Eubacterium 1111 1 11 0 0 1 1736 species Eubacterium limosum 1100 485256 4 order Natranaerobiales 883 1 6 0 1 0 485255 3 family 1 877 Natranaerobiaceae 1 876 Natranaerobius genus 2 375928 0 10 866 Natranaerobius thermophilus 1 375929 species 0 0 2770089 3 order 911 661 2770092 2 family 0 2 499228 genus 1 Tepidanaerobacter 661 5 0 499229 1 species 656 Tepidanaerobacter acetatoxydans 0 family 1 2770093 250 0 250 1 291988 genus 0 250 Thermosediminibacter oceani 1 291990 species 0 0 27 7033 Halanaerobiales 1 order 53433 12 4657 Halanaerobiaceae 1 972 6 family 15 0 0 30 genus 2 32636 1 Halothermothrix 719 0 species 1 31909 689 Halothermothrix orenii 0 21 genus 2330 3 Halanaerobium 3923 1 0 species 2331 1 2069 Halanaerobium praevalens Halanaerobium hydrogeniformans 1833 656519 1 species 0 0 13 family 5 53434 1 Halobacteroidaceae 2349 Acetohalobium 898 1 2 28186 genus 5 0 893 Acetohalobium arabaticum species 28187 1 0 1 Halobacteroides 1438 genus 2 42417 0 9 Halobacteroides halobius 1429 species 42422 1 0 0 1247 1 84086 no rank 1247 endosymbiont 'TC1' of Trimyema compressum species 1 243899 0 13 0 909932 29 class Negativicutes 8383 1 1 Selenomonadales 5256 909929 14 order 29 0 1843490 4 family 1 Sporomusaceae 2629 5 0 genus 3 365348 Pelosinus 2624 1 0 14 1292 Pelosinus fermentans species 365349 1 0 0 no rank 1 2629460 1318 0 species 1 484770 1318 Pelosinus sp. UFO1 0 8 family 1843491 9 1 2598 Selenomonadaceae 1 948 Megamonas 158846 2 genus 2 0 0 946 Megamonas hypermegale 1 158847 species 1 Selenomonas 1642 genus 970 6 0 41 69823 1 species 381 Selenomonas sputigena 0 339 Selenomonas ruminantium 971 1 species 0 0 3 2637378 no rank 881 Selenomonas sp. oral taxon 478 314 species 1 712538 0 0 Selenomonas sp. oral taxon 136 319 species 713030 1 0 species 1 1884263 Selenomonas sp. oral taxon 920 248 0 22 order 10 1843489 Veillonellales 2476 1 1 Veillonellaceae 2454 31977 9 family 23 0 1 909928 genus 196 0 species 1 1702287 Negativicoccus massiliensis 196 0 0 1 Megasphaera 518 1 genus 2 906 0 species 907 1 Megasphaera elsdenii 517 1 Dialister 609 genus 39948 2 0 1 Dialister pneumosintes 608 39950 1 species 0 7 0 Veillonella 1108 1 29465 3 genus 282 Veillonella rodentium 248315 1 species 0 1 29466 species Veillonella parvula 819 0 order 1843488 4 638 0 family 4 909930 1 Acidaminococcaceae 638 0 6 0 1 1 Acidaminococcus 632 genus 904 3 Acidaminococcus intestini 235 187327 1 species 0 Acidaminococcus fermentans 396 905 1 species 0 Tissierellia 6631 1 19 1737404 class 18 0 588 no rank 2 1737407 0 Ezakiella 588 1 1582879 2 genus 4 0 1852374 1 species Ezakiella massiliensis 584 0 0 19 1 6025 Tissierellales order 16 1737405 0 21 family 12 1570339 Peptoniphilaceae 4456 1 1161127 2 genus 1 Murdochiella 331 1 0 species 1 1852373 Murdochiella vaginalis 330 0 1 Anaerococcus 1323 genus 165779 3 0 4 0 species 1870984 1 659 Anaerococcus mediterraneensis 0 species 1 33034 660 Anaerococcus prevotii 0 11 genus 162289 2 599 Peptoniphilus 1 0 588 2637196 1 no rank species 1 1912856 588 Peptoniphilus sp. ING2-D1G 0 0 1 genus 2 543311 1 Parvimonas 1267 Parvimonas micra 1266 species 1 33033 0 150022 2 genus 1 Finegoldia 915 2 0 0 1260 1 species Finegoldia magna 913 2042895 3 family 1550 Gottschalkiaceae 1 4 0 0 5 1 1546 Gottschalkia genus 2 1505664 Gottschalkia acidurici 1541 1 1556 species 0 228 0 91061 432 class 1 Bacilli 327595 233382 Bacillales 1 266 1385 order 495 0 46 186822 family 1 Paenibacillaceae 44171 77 0 1 3408 Brevibacillus 55080 4 genus 7 0 0 1626 Brevibacillus laterosporus species 1 1465 Brevibacillus formosus 728 species 1 54913 0 0 Brevibacillus brevis 1047 species 1393 1 0 3 564 Thermobacillus 1 genus 76632 2 species 1 377615 Thermobacillus composti 561 0 0 915 no rank 85151 3 0 5 1 Aneurinibacillus 915 genus 55079 3 1500254 1 species Aneurinibacillus soli 477 0 2642329 1 no rank 433 0 species 1 1450761 Aneurinibacillus sp. XH2 433 0 154 0 44249 36 genus 1 Paenibacillus 39207 0 species 1 1763538 791 Paenibacillus crassostreae 0 436 Paenibacillus terrae species 1 159743 1335 Paenibacillus durus species 44251 1 0 Paenibacillus sabinae 335 365617 1 species 0 0 1 1126833 species Paenibacillus beijingensis 534 Paenibacillus stellifer 342 species 169760 1 0 0 species 1 1462996 398 Paenibacillus yonginensis 0 species 1 160799 Paenibacillus borealis 708 species 1 1870820 510 Paenibacillus ihbetae 0 species 1 1464 Paenibacillus larvae 989 0 0 species 1 59893 912 Paenibacillus peoriae 0 1572 Paenibacillus bovis 1616788 1 species species 1 189425 1023 Paenibacillus graminis 0 1431 Paenibacillus mucilaginosus 1 61624 species 0 0 6383 Paenibacillus polymyxa 1406 1 species species 172713 1 427 Paenibacillus kribbensis 0 species group 2044880 1 595 0 0 species 1 483937 595 Paenibacillus riograndensis 0 1 528191 species Paenibacillus xylanexedens 551 0 species 1 414771 Paenibacillus donghaensis 2731 0 15098 13 185978 no rank 0 Paenibacillus sp. FSL H7-0737 762 species 1 1536775 species 1 324057 Paenibacillus sp. JDR-2 380 0 1536771 1 species Paenibacillus sp. FSL R5-0912 607 0 0 1546 Paenibacillus sp. FSL P4-0081 species 1536769 1 0 species 1 1536772 554 Paenibacillus sp. FSL R7-0273 997 Paenibacillus sp. BIHB4019 1 1870819 species 0 2134 Paenibacillus sp. FSL R5-0345 species 1 1536770 0 0 Paenibacillus sp. 32O-W 453 species 1 1695218 0 species 481743 1 411 Paenibacillus sp. Y412MC10 5423 Paenibacillus sp. IHBB 10380 1 1566358 species 0 556 Paenibacillus sp. FSL R7-0331 1 1536773 species 0 0 1 2069255 species 495 Paenibacillus sp. lzh-N1 species 1 1536774 780 Paenibacillus sp. FSL H7-0357 0 Paenibacillus naphthalenovorans 402 species 162209 1 0 0 1069 Paenibacillus odorifer species 1 189426 0 Paenibacillus swuensis 481 species 1 1178515 4 186824 family 1 Thermoactinomycetaceae 302 2 0 Laceyella 4 1 292635 genus 0 2 1677050 genus 1 Novibacillus 296 1 0 1471761 1 species 295 Novibacillus thermophilus 0 0 160 family 186817 120 123339 Bacillaceae 1 0 2 1 Lentibacillus 460 genus 175304 2 458 Lentibacillus amyloliquefaciens 1 1472767 species 0 15 129337 genus Geobacillus 6547 1 196 0 0 129338 1 species Geobacillus subterraneus 256 669 Geobacillus stearothermophilus species 1 1422 0 0 2642459 6 no rank 2513 Geobacillus sp. WCH70 778 471223 1 species 0 0 species 1 581103 600 Geobacillus sp. Y4.1MC1 0 species 1233873 1 165 Geobacillus sp. GHH01 0 1 691437 species Geobacillus sp. C56-T3 667 0 170 Geobacillus sp. Y412MC61 species 1 544556 0 Geobacillus sp. Y412MC52 133 species 550542 1 601 Geobacillus thermodenitrificans species 1 33940 0 0 314 Geobacillus genomosp. 3 1921421 1 species 0 species group 1505648 4 1998 0 1 33941 species Geobacillus thermoleovorans 1024 0 species 169283 1 Geobacillus lituanicus 275 0 406 Geobacillus kaustophilus species 1462 1 293 Geobacillus thermocatenulatus species 33938 1 0 2 0 2252 Oceanobacillus 1 2 182709 genus 182710 1 species Oceanobacillus iheyensis 2250 0 0 46 6150 Lysinibacillus 1 genus 400634 5 Lysinibacillus fusiformis 927 1 28031 species 0 0 Lysinibacillus varians 923 species 1145276 1 0 2636778 1 no rank 1122 species 2072025 1 1122 Lysinibacillus sp. YS11 0 0 species 1421 1 3132 Lysinibacillus sphaericus 1 0 2 1055323 genus 707 Aeribacillus 1 0 Aeribacillus pallidus 706 1 33936 species 0 2208 genus 2675230 2 0 859143 1 species 1392 Bacillus kochii 0 Bacillus oceanisediminis 816 1 665099 species 1375 Fictibacillus 1 genus 1329200 3 0 1 636 Fictibacillus phosphorivorans species 1221500 1 0 0 738 Fictibacillus arsenicus 1 255247 species Parageobacillus 734 1 2 1906945 genus 1 0 Parageobacillus thermoglucosidasius 733 1 1426 species 0 32 0 6 150247 genus 1 4765 Anoxybacillus species 294699 1 Anoxybacillus amylolyticus 1105 0 1679 2 2639704 no rank 0 0 825 Anoxybacillus sp. B7M1 species 1490057 1 1490052 1 species Anoxybacillus sp. B2M1 854 0 0 species 33934 1 1171 Anoxybacillus flavithermus 0 Anoxybacillus gonensis 778 198467 1 species 0 314 1 351195 genus 0 314 Salimicrobium jeotgali 1 1230341 species genus 2 459532 502 Terribacillus 1 0 1 species 586416 1 501 Terribacillus aidingensis 0 0 1 genus 45667 3 1 1085 Halobacillus species 402384 1 Halobacillus mangrovi 602 0 482 Halobacillus halophilus 1 1570 species 0 84406 7 genus 1 Virgibacillus 6180 20 0 species 1 163877 Virgibacillus necropolis 1035 0 0 2111 2620237 2 no rank 0 species 403957 1 857 Virgibacillus sp. SK37 0 1911587 1 species Virgibacillus sp. 6R 1254 0 1193 Virgibacillus pantothenticus species 1 1473 Virgibacillus phasianinus 874 species 1 2017483 0 1 1482 species Virgibacillus halodenitrificans 947 0 81742 Bacillus 1 1386 58 genus 1175 0 0 653685 9 species group 8989 Bacillus paralicheniformis 468 species 1648923 1 0 Bacillus subtilis 3844 species 1 1423 0 species 119858 1 447 Bacillus sonorensis 0 1 72361 species 76 Bacillus vallismortis 0 3 1938374 species subgroup 2313 0 1 659243 species 202 Bacillus siamensis 0 492670 1 species Bacillus velezensis 1057 0 0 Bacillus amyloliquefaciens 1054 1390 1 species 0 1402 1 species 658 Bacillus licheniformis 0 Bacillus atrophaeus 1183 species 1452 1 0 486 Bacillus infantis 1 324767 species 0 species 632773 1 398 Bacillus beveridgei 0 557 species group 1792192 1 Bacillus altitudinis 557 species 293387 1 0 species 33932 1 Bacillus cohnii 1556 0 Bacillus glycinifermentans 1058 species 1 1664069 0 0 1392 Bacillus safensis 561879 1 species 0 41502 species group 10 86661 0 Bacillus mycoides 3974 1405 1 species species 1 658666 Bacillus bombysepticus 986 0 2402 2750818 3 no rank 0 0 1 2053832 species 698 Bacillus sp. HBCD-sjtu 0 698 Bacillus sp. ABP14 species 1892404 1 0 Bacillus sp. FDAARGOS_235 1006 species 1 1839798 0 1740 Bacillus anthracis species 1 1392 0 species 580165 1 Bacillus cytotoxicus 855 0 1 1428 species Bacillus thuringiensis 17114 0 155322 1 species Bacillus toyonensis 777 species 1 1396 13654 Bacillus cereus 0 0 6467 no rank 185979 19 species 1837130 1 313 Bacillus sp. FJAT-14266 0 0 Bacillus sp. JS 222 1 1127744 species 0 912 Bacillus sp. IHB B 7164 1 1827146 species 0 species 1941347 1 169 Bacillus sp. 275 0 1 1565991 species Bacillus sp. X1(2014) 755 0 87 Bacillus sp. Lzh-5 species 1 2049935 0 Bacillus sp. SJ-10 183 1 563169 species 0 Bacillus sp. (in: Bacteria) 118 1 1409 species 0 2009331 1 species Bacillus sp. MD-5 237 species 1 1570330 69 Bacillus sp. BH072 0 1 1856406 species 304 Bacillus sp. H15-1 0 0 306 Bacillus sp. 1s-1 1 2026248 species 0 666686 1 species 1154 Bacillus sp. 1NLA3E 756828 1 species 653 Bacillus sp. WP8 0 0 species 1 98228 Bacillus sp. OxB-1 368 136 Bacillus sp. YP1 1 1574141 species 0 0 1 1446792 species 153 Bacillus sp. Pc3 species 1 1774743 Bacillus sp. SDLI1 207 0 121 Bacillus sp. LM 4-2 species 1 1628753 0 0 1 1404 species Bacillus megaterium 5687 1479 1 species 506 Bacillus smithii 0 0 1305 Bacillus methanolicus species 1471 1 0 Bacillus cellulosilyticus 1113 species 1 1413 species 1398 1 726 Bacillus coagulans 0 0 412384 1 species Bacillus aryabhattai 922 species 79883 1 590 Bacillus horikoshii 0 species 86664 1 1510 Bacillus flexus 0 1366 Bacillus endophyticus 1 135735 species 0 1178537 1 species 528 Bacillus xiamenensis 0 1 1408 species Bacillus pumilus 2591 0 0 Bacillus weihaiensis 1163 1 1547283 species 0 species 1 79881 Bacillus gibsonii 155 906 Amphibacillus 1 genus 29331 2 0 4 Amphibacillus xylanus 902 species 1449 1 0 4639 genus 2675234 5 0 0 Bacillus clausii 889 1 79880 species 0 species 1 300825 876 Bacillus lehensis Bacillus pseudofirmus 971 1 79885 species 0 0 species 1 86665 481 Bacillus halodurans species 1 199441 1422 Bacillus krulwichiae 0 2675229 2 genus 2613 0 0 2072 Bacillus simplex 1 1478 species 0 541 Bacillus muralis 264697 1 species 0 419 186821 1 family 0 419 no rank 1 663587 0 [Bacillus] selenitireducens 419 species 1 85683 0 9 539002 no rank 2624 0 1914 no rank 539742 7 0 32 1 1914 Exiguobacterium genus 33986 7 0 1 132920 species Exiguobacterium antarcticum 209 0 1420 2644629 4 no rank 0 species 360911 1 203 Exiguobacterium sp. AT1b 0 species 1 1224749 504 Exiguobacterium sp. ZWU0009 Exiguobacterium sp. U13-1 478 species 1849031 1 0 0 species 1399115 1 235 Exiguobacterium sp. MH3 0 Exiguobacterium sibiricum 253 1 332410 species no rank 539738 2 710 0 2 1378 genus 710 Gemella 1 1 0 0 709 no rank 1 2624949 Gemella sp. oral taxon 928 709 species 1 1785995 0 9 186823 family 1 2372 Alicyclobacillaceae 11 0 1145 Tumebacillus 1 genus 432330 3 0 8 0 Tumebacillus avium 770 1 1903704 species 367 Tumebacillus algifaecis 1214604 1 species 0 1 Alicyclobacillus 580 29330 2 genus 6 0 0 Alicyclobacillus acidocaldarius 574 1 405212 species Kyrpidia 636 1 1129704 3 genus 3 0 0 330 Kyrpidia tusciae 1 33943 species 0 Kyrpidia sp. EA-1 303 species 2055160 1 Staphylococcaceae 38589 1 family 40 90964 0 71 0 1 2005363 genus 719 Auricoccus indicus 719 1849491 1 species 0 genus 4 69965 Macrococcus 2099 1 0 8 0 species 1855823 1 602 Macrococcus canis 0 species 1 69966 662 Macrococcus caseolyticus 0 1 2619255 no rank 827 0 Macrococcus sp. IME1552 827 species 1 1898474 genus 33 1279 1 35434 Staphylococcus 0 260 1175 Staphylococcus haemolyticus species 1 1283 0 species 1 1282 2034 Staphylococcus epidermidis 0 Staphylococcus kloosii 828 29384 1 species 0 0 species 1 214473 941 Staphylococcus nepalensis 0 Staphylococcus hyicus 603 species 1284 1 0 species 1295 1 905 Staphylococcus schleiferi 0 Staphylococcus cohnii 1032 species 1 29382 1 70258 species 588 Staphylococcus piscifermentans 0 900 no rank 91994 1 0 species 1 1715860 Staphylococcus sp. AntiMn-1 900 0 0 Staphylococcus lutrae 657 155085 1 species 0 1540 Staphylococcus equorum 1 246432 species 1294 1 species 456 Staphylococcus muscae 0 1698 Staphylococcus xylosus 1288 1 species 0 0 Staphylococcus saprophyticus 1127 1 29385 species 1286 1 species Staphylococcus simulans 647 0 0 762 Staphylococcus felis species 1 46127 Staphylococcus agnetis 602 985762 1 species 0 1 308354 species Staphylococcus simiae 1105 0 404 Staphylococcus pettenkoferi 1 170573 species 0 1 1281 species Staphylococcus carnosus 837 0 Staphylococcus lugdunensis 899 28035 1 species 0 Staphylococcus stepanovicii 1165 species 643214 1 0 0 species 1280 1 Staphylococcus aureus 3642 Staphylococcus condimenti 863 species 1 70255 0 61015 1 species 863 Staphylococcus succinus 0 Staphylococcus capitis 1157 29388 1 species 0 species 283734 1 Staphylococcus pseudintermedius 1192 0 0 Staphylococcus hominis 1066 1 1290 species 0 45972 1 species 2457 Staphylococcus pasteuri Staphylococcus sciuri 1165 1 1296 species 0 953 Staphylococcus argenteus 985002 1 species 0 911 Staphylococcus warneri 1 1292 species 0 0 45669 1 genus 266 species 1 407035 Salinicoccus halodurans 266 0 family 186820 9 6762 Listeriaceae 1 0 17 51 0 1637 6 genus 1 Listeria 5679 0 1642 1 species Listeria innocua 717 0 1639 1 species Listeria monocytogenes 2331 1 1643 species 728 Listeria welshimeri 0 0 1185 Listeria ivanovii 1 1638 species 0 667 Listeria seeligeri species 1 1640 0 12 1 1066 Brochothrix genus 2755 2 1054 Brochothrix thermosphacta 1 2756 species 0 family 27 186818 14309 Planococcaceae 1 0 51 8 0 2 1649 genus 1 Kurthia 813 0 805 no rank 1 2644826 0 Kurthia sp. 11kri321 805 species 1 1750719 0 2 genus 157226 2 716 Jeotgalibacillus 1 Jeotgalibacillus malaysiensis 714 1508404 1 species 0 27 0 3 648800 genus 1 Solibacillus 1843 0 species 1 76853 921 Solibacillus silvestris 0 no rank 1 2637870 895 0 2048654 1 species 895 Solibacillus sp. R5-41 18 0 1569 5 genus 1 3580 Sporosarcina 0 species 1476 1 1126 Sporosarcina psychrophila 1721 Sporosarcina ureae 1 1571 species 0 0 715 no rank 2647733 2 0 species 1 1930546 357 Sporosarcina sp. P37 species 1930764 1 358 Sporosarcina sp. P33 0 0 55 1 Planococcus 6534 genus 12 1372 0 1302659 1 species Planococcus sp. L10.15 727 1118 2 2662419 no rank 0 469 Planococcus sp. MB-3u-03 1 2058136 species 0 649 Planococcus sp. PAMC 21323 species 1526927 1 0 species 200991 1 334 Planococcus rifietoensis 0 1 1374 species 644 Planococcus kocurii 0 species 1 414778 621 Planococcus donghaensis 0 0 species 1 1038856 Planococcus plakortidis 249 0 species 161360 1 518 Planococcus antarcticus 1 1598147 species Planococcus faecalis 741 0 0 Planococcus maritimus 683 species 1 192421 844 Planococcus halocryophilus 1 1215089 species 0 1 772 Rummeliibacillus genus 648802 2 0 4 0 768 Rummeliibacillus stabekisii 1 241244 species 0 223 order 186826 165 Lactobacillales 93985 1 52 0 34563 Lactobacillaceae 1 33958 58 family 0 2943 2767887 4 genus 283 Lactobacillus ruminis 1 1623 species 0 1624 1 species 1993 Lactobacillus salivarius 0 0 species 89059 1 Lactobacillus acidipiscis 381 1 1601 species Lactobacillus agilis 286 0 233 genus 2767876 1 0 233 Lactobacillus amylophilus species 1603 1 0 Pediococcus 2758 1 1253 6 genus 17 0 0 species 51663 1 Pediococcus damnosus 517 0 343 1670797 1 species group Pediococcus acidilactici 343 1254 1 species 0 0 species 1255 1 Pediococcus pentosaceus 868 Pediococcus claussenii 604 species 1 187452 0 0 Pediococcus inopinatus 409 species 114090 1 1288 2767885 2 genus 0 0 Lactobacillus curvatus 462 1 28038 species species 1599 1 826 Lactobacillus sakei 0 0 genus 2742598 3 2041 1175 Lactobacillus reuteri 1598 1 species 0 0 Lactobacillus mucosae 423 97478 1 species 1 1613 species Lactobacillus fermentum 443 0 747 genus 2767886 3 0 0 217 Lactobacillus koreensis 1 637971 species Lactobacillus zymae 140 1 267363 species 0 390 Lactobacillus brevis 1 1580 species 0 0 3119 2767842 3 genus 0 1 1590 species Lactobacillus plantarum 2468 species 1 60520 338 Lactobacillus paraplantarum 0 0 species 1589 1 313 Lactobacillus pentosus 0 389 genus 1 2767877 389 Lactobacillus kunkeei 148814 1 species 0 574 genus 2767892 1 0 0 574 Lactobacillus paracollinoides 240427 1 species 3518 6 2767879 genus 0 685 Lactobacillus allii 1847728 1 species 0 544 Lactobacillus alimentarius species 1602 1 0 0 Lactobacillus ginsenosidimutans 557 species 1007676 1 0 Lactobacillus farciminis 557 1612 1 species 0 Lactobacillus crustorum 683 species 392416 1 492 Lactobacillus heilongjiangensis 1074467 1 species 0 genus 2759736 3 2206 0 Lactobacillus rhamnosus 761 species 1 47715 0 0 species 1 1597 Lactobacillus paracasei 659 0 Lactobacillus casei 786 species 1 1582 1015 2767893 3 genus 0 0 species 1 1138822 Lactobacillus curieae 383 0 325 Lactobacillus buchneri species 1581 1 species 1 152331 Lactobacillus parabuchneri 307 0 0 1244 genus 2767881 2 Lactobacillus lindneri 697 species 53444 1 0 547 Lactobacillus sanfranciscensis 1 1625 species 0 223 0 1578 16 genus 10825 Lactobacillus 1 Lactobacillus johnsonii 1263 species 33959 1 0 0 1 1600 species Lactobacillus acetotolerans 437 0 4 2620435 no rank 2165 681 Lactobacillus sp. wkB8 species 1 1545702 0 0 species 2099789 1 321 Lactobacillus sp. CBA3606 0 250 Lactobacillus sp. D1501 1 2108362 species 0 species 2099788 1 913 Lactobacillus sp. CBA3605 0 Lactobacillus gasseri 1147 species 1596 1 1587 1 species 1101 Lactobacillus helveticus 0 555 Lactobacillus jensenii 1 109790 species 0 0 species 1 267818 Lactobacillus kefiranofaciens 448 0 1 1579 species 548 Lactobacillus acidophilus 0 Lactobacillus amylovorus 629 1604 1 species 0 1470 Lactobacillus delbrueckii species 1 1584 459 Lactobacillus gallinarum species 1 52242 0 0 1 83683 species 380 Lactobacillus amylolyticus 0 genus 2767890 1 521 521 Lactobacillus hokkaidonensis species 1193095 1 0 genus 2767889 2 1090 0 0 species 1 375175 Lactobacillus backii 644 Lactobacillus coryniformis 446 species 1610 1 0 656 263855 1 no rank 0 Lactobacillales bacterium 656 1993866 1 species 0 5 0 17 81850 family 1 Leuconostocaceae 6598 genus 9 1243 4076 Leuconostoc 1 0 40 species 33964 1 363 Leuconostoc citreum 0 Leuconostoc lactis 222 species 1246 1 0 0 species 255248 1 196 Leuconostoc garlicum 399 Leuconostoc kimchii 1 136609 species 0 0 Leuconostoc carnosum 533 1252 1 species 0 species 1 1244 Leuconostoc gelidum 958 0 961 Leuconostoc mesenteroides species 1245 1 0 404 no rank 2685106 1 979982 1 species 404 Leuconostoc sp. C2 0 16 0 6 46255 genus 2053 Weissella 1 0 1249 1 species Weissella paramesenteroides 412 0 Weissella jogaejeotgali 532 species 1 1631871 759620 1 species Weissella ceti 261 0 0 Weissella cibaria 369 1 137591 species 0 463 Weissella koreensis species 165096 1 0 464 46254 1 genus 0 464 Oenococcus oeni 1247 1 species 0 3 family 186827 8 1 Aerococcaceae 2375 1 Aerococcus 2372 genus 7 1375 0 11 0 1 128944 species Aerococcus urinaehominis 265 0 species 119206 1 239 Aerococcus sanguinicola 521 Aerococcus urinaeequi species 51665 1 0 1 1377 species 375 Aerococcus viridans 0 0 Aerococcus urinae 498 species 1 1376 species 87541 1 463 Aerococcus christensenii 0 0 12 family 11 186828 1 Carnobacteriaceae 7744 15 0 2747 5 genus Carnobacterium 4583 1 Carnobacterium inhibens 762 147709 1 species 0 2525 Carnobacterium maltaromaticum species 2751 1 0 0 no rank 2 257487 1281 0 552 Carnobacterium sp. CP1 species 1564681 1 208596 1 species Carnobacterium sp. 17-4 729 0 0 1 genus 191769 2 1 1964 Marinilactibacillus 0 1963 no rank 1 2632303 0 species 1 1911586 1963 Marinilactibacillus sp. 15R genus 3 1470540 1 Jeotgalibaca 1185 0 3 0 575 Jeotgalibaca dankookensis species 708126 1 0 2621505 1 no rank 607 0 607 Jeotgalibaca sp. PTS2502 species 1 1903686 family 49 1300 1 30537 Streptococcaceae 0 25 0 222 genus 43 1301 23234 Streptococcus 1 0 438 Streptococcus pasteurianus species 197614 1 0 82348 1 species Streptococcus pluranimalium 310 0 Streptococcus gordonii 930 1302 1 species 0 1 59310 species 379 Streptococcus macedonicus 1 28037 species Streptococcus mitis 702 0 276 Streptococcus acidominimus species 1 1326 0 Streptococcus himalayensis 225 1888195 1 species 0 0 Streptococcus parasanguinis 311 1318 1 species 0 Streptococcus cristatus 243 species 1 45634 0 1335 1 species 313 Streptococcus equinus 0 1208 species group 2 119603 0 species 1334 1 Streptococcus dysgalactiae 422 0 species 1336 1 786 Streptococcus equi species 1 1307 Streptococcus suis 1649 0 1162 Streptococcus agalactiae species 1 1311 0 0 1 1308 species 634 Streptococcus thermophilus species 1 1811193 326 Streptococcus pantholopis 0 Streptococcus infantarius 639 102684 1 species 0 0 1 1348 species Streptococcus parauberis 622 257758 1 species Streptococcus pseudopneumoniae 256 0 species 1309 1 765 Streptococcus mutans 0 species 315405 1 Streptococcus gallolyticus 860 0 species group 3 671232 1971 0 Streptococcus intermedius 744 species 1 1338 0 0 Streptococcus constellatus 343 1 76860 species 1328 1 species Streptococcus anginosus 884 0 0 482 Streptococcus uberis 1 1349 species 0 Streptococcus sanguinis 260 1305 1 species 2057 no rank 2608887 7 0 species 1759399 1 277 Streptococcus sp. A12 0 201 Streptococcus sp. I-G2 1 1156431 species 0 0 species 712633 1 324 Streptococcus sp. oral taxon 431 0 1839799 1 species 318 Streptococcus sp. FDAARGOS_192 0 1 1156433 species 208 Streptococcus sp. I-P16 species 1319 1 Streptococcus sp. 'group B' 555 0 0 Streptococcus sp. NPS 308 174 1 1902136 species Streptococcus pneumoniae 1269 species 1313 1 0 species 1825069 1 301 Streptococcus marmotae 0 1 1314 species Streptococcus pyogenes 1224 0 1303 1 species Streptococcus oralis 785 0 0 Streptococcus lutetiensis 426 150055 1 species Streptococcus merionis 294 1 400065 species 0 0 species 1 1814128 Streptococcus halotolerans 291 species 1346 1 Streptococcus iniae 440 0 0 1304 1 species Streptococcus salivarius 964 0 9 1 Lactococcus 7278 genus 1357 5 Lactococcus lactis 5182 1 1358 species 0 0 870 Lactococcus garvieae species 1 1363 0 species 1 1366 325 Lactococcus raffinolactis 1364 1 species Lactococcus piscium 892 0 81852 20 family Enterococcaceae 11289 1 25 0 0 1 genus 2 51668 1 899 Tetragenococcus 0 1 51669 species 898 Tetragenococcus halophilus 0 4 1030 Melissococcus 1 genus 33969 2 species 33970 1 Melissococcus plutonius 1026 0 57 0 1350 12 genus 1 Enterococcus 7906 0 1 37734 species Enterococcus casseliflavus 459 0 species 1 53346 Enterococcus mundtii 747 648 Enterococcus wangshanyuanii 1 2005703 species 0 1354 1 species 792 Enterococcus hirae 0 0 1315 3 2608891 no rank Enterococcus sp. FDAARGOS_375 470 species 1 2060307 0 404 Enterococcus sp. CR-Ec1 species 1 2057791 0 0 2060306 1 species Enterococcus sp. FDAARGOS_163 441 0 species 1 1351 Enterococcus faecalis 1184 575 Enterococcus durans species 53345 1 0 0 species 417368 1 704 Enterococcus thailandicus 0 1 1352 species Enterococcus faecium 1425 2737 3 genus 1 Vagococcus 1429 12 0 0 species 633807 1 655 Vagococcus penaei 0 Vagococcus teuberi 762 519472 1 species clade 160 1798711 9721948 0 phylum 160 1117 1 9721948 Cyanobacteria 0 37 1161 34 order 1 54047 Nostocales 151 0 0 85 26614 Nostocaceae 1 family 1162 18 17452 Nostoc 1 genus 10 1177 0 125 no rank 7 2593658 13678 0 2524 Nostoc sp. PCC 7524 28072 1 species 0 Nostoc sp. PCC 7107 2442 species 317936 1 0 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1666 species 1 1261031 1576 Nostoc sp. PCC 7120 1 103690 species 0 1572 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 1 1618022 0 species 1 1869241 Nostoc sp. CENA543 1763 0 0 species 1 1751286 Nostoc sp. NIES-3756 2135 0 1 1306274 species 2096 Nostoc flagelliforme 0 Nostoc punctiforme 1553 species 272131 1 0 13 Trichormus 3372 1 genus 3 264688 1 1164 species 1657 Trichormus azollae 0 0 species 264691 1 1702 Trichormus variabilis 77 0 1163 4 genus Anabaena 5705 1 Anabaena cylindrica 1957 1165 1 species 0 3671 no rank 2619674 2 0 0 1727 Anabaena sp. 90 1 46234 species 0 1944 Anabaena sp. WA102 1 1647413 species family 1185 3 Rivulariaceae 3835 1 0 70 0 4 genus 2 373984 3765 Rivularia 1 3761 no rank 2676603 1 0 0 373994 1 species 3761 Rivularia sp. PCC 7116 0 2661849 8 family 14865 8 1186 genus 1 14865 Calothrix 74 0 12920 2619626 6 no rank 0 0 Calothrix sp. NIES-3974 2478 1 2005462 species species 1 99598 1590 Calothrix sp. PCC 7507 0 Calothrix sp. 336/3 1792 species 1 1337936 0 2053 Calothrix sp. NIES-4101 2005461 1 species 0 0 2208 Calothrix sp. NIES-2098 1954171 1 species Calothrix sp. NIES-4071 2799 1 2005469 species 0 1871 Calothrix parietina 32054 1 species 0 1638 1219117 1 no rank 0 0 1940762 1 species Nostocales cyanobacterium HT-58-2 1638 3 0 6944 Hapalosiphonaceae 1 1892263 3 family 1 Fischerella 6941 genus 1190 2 0 3 0 6938 no rank 1 494603 0 species 1752063 1 6938 Fischerella sp. NIES-3754 3036 Chroococcidiopsidales 1 order 4 1890505 0 10 0 34 1 3026 Chroococcidiopsidaceae family 1890528 3 6 0 2992 Chroococcidiopsis 1 54298 2 genus 0 2986 Chroococcidiopsis thermalis 1 54299 species 6 307596 class 1 1317 Gloeobacteria 8 0 0 9 order 5 307595 1309 Gloeobacterales 1 1890422 4 family Gloeobacteraceae 1300 1 17 0 0 12 genus 3 33071 1283 Gloeobacter 1 33072 1 species 677 Gloeobacter violaceus 0 594 Gloeobacter kilaueensis species 1416614 1 0 9584647 Synechococcales 1 59 1890424 order 237 0 71 0 1 Synechococcaceae 392208 1890426 34 family 2 0 146785 2 genus 1 Thermosynechococcus 375 1 146786 species 373 Thermosynechococcus elongatus 0 genus 2 13034 Dactylococcopsis 1250 1 0 4 Dactylococcopsis salina 1246 1 292566 species 0 61 0 3 167375 genus 1 5188 Cyanobium 0 2462 2627006 1 no rank 0 Cyanobium sp. NIES-981 2462 species 1851505 1 species 59930 1 Cyanobium gracile 2665 0 0 1367 genus 1129 26 385324 Synechococcus 1 Synechococcus elongatus 484 species 32046 1 0 0 species 33070 1 Synechococcus lividus 336 0 383137 no rank 2626047 23 1714 Synechococcus sp. CC9902 species 1 316279 0 0 Synechococcus sp. PCC 6312 482 1 195253 species 0 species 32049 1 Synechococcus sp. PCC 7002 395 Synechococcus sp. PCC 7117 415 species 1 195498 0 0 541 Synechococcus sp. JA-2-3B'a(2-13) species 1 321332 0 species 1 321327 Synechococcus sp. JA-3-3Ab 408 Synechococcus sp. WH 7803 3355 species 32051 1 0 0 1 1280380 species 9020 Synechococcus sp. KORDI-100 0 446 Synechococcus sp. NIES-970 species 1827144 1 0 362 Synechococcus sp. PCC 8807 species 1 195248 0 Synechococcus sp. RCC307 1941 316278 1 species 0 species 110662 1 Synechococcus sp. CC9605 156400 0 species 1 1916956 Synechococcus sp. SynAce01 1638 0 Synechococcus sp. CC9311 1300 64471 1 species 374981 1 species 473 Synechococcus sp. PCC 7003 0 6006 Synechococcus sp. KORDI-49 species 585423 1 0 0 12198 Synechococcus sp. WH 8102 species 1 84588 species 1173263 1 1065 Synechococcus sp. PCC 7502 0 0 species 166314 1 Synechococcus sp. WH 8109 131862 0 1 1350461 species 471 Synechococcus sp. UTEX 2973 0 Synechococcus sp. KORDI-52 40148 species 1 585425 0 species 1 29410 12083 Synechococcus sp. WH 8103 1 374982 species 414 Synechococcus sp. PCC 73109 0 0 1202 2303730 2 family 1202 Halomicronema 1 170610 2 genus 10 0 species 1209493 1 Halomicronema hongdechloris 1192 0 1 Prochloraceae 9180958 5 1213 family 27 0 0 307 1 Prochlorococcus 9180931 genus 1218 4 no rank 2627481 2 2103586 0 1 1501268 species 2090350 Prochlorococcus sp. MIT 0604 0 species 1501269 1 Prochlorococcus sp. MIT 0801 13236 0 1 1219 species 7077038 Prochlorococcus marinus 0 0 10 1 1955 Acaryochloridaceae family 3 1890429 1 Acaryochloris 1945 155977 2 genus 14 0 1 155978 species Acaryochloris marina 1931 0 0 17 1 3155 Leptolyngbyaceae family 6 1890438 0 28 1 3138 Leptolyngbya genus 47251 5 0 species 1184 1 693 Leptolyngbya boryana no rank 3 2650499 2417 0 578 Leptolyngbya sp. NIES-3755 species 1752064 1 0 611 Leptolyngbya sp. O-77 1 1080068 species 0 1228 Leptolyngbya sp. PCC 7376 1 111781 species 0 6 0 1890428 5 family 1 Merismopediaceae 2695 2689 Synechocystis 1 genus 4 1142 0 45 2644 no rank 2640012 3 0 0 566 Synechocystis sp. PCC 6803 species 1148 1 0 Synechocystis sp. IPPAS B-1465 566 species 1 2116702 1512 Synechocystis sp. PCC 6714 species 1 1147 0 Pseudanabaenaceae 2237 1 family 1890436 3 0 4 1 2233 Pseudanabaena 2 1152 genus 5 0 no rank 2593292 1 2228 0 0 Pseudanabaena sp. PCC 7367 2228 species 82654 1 subclass 1301283 47 70023 0 34588 Chroococcales 1 order 1118 26 0 67 0 15 family 3 1890452 1 2283 Cyanobacteriaceae 16 0 102234 2 genus 2268 Cyanobacterium 1 0 1 379064 species 2252 Cyanobacterium aponinum 11588 Aphanothecaceae 1 family 1890450 10 0 21 0 2073 genus 1 263510 0 2073 species 2546360 1 strain 1 43989 2073 Cyanothece sp. ATCC 51142 0 genus 28070 2 3999 0 2081 1 2546359 species 0 0 Cyanothece sp. PCC 7822 2081 1 497965 strain 0 2546356 1 species 1918 0 1918 Cyanothece sp. PCC 7424 strain 65393 1 1 Candidatus Atelocyanobacterium 1937 2 1453359 genus 6 0 0 1931 Candidatus Atelocyanobacterium thalassa 713887 1 species 2546365 2 genus 2558 0 0 2558 species 2 2546366 strain 1 41431 Cyanothece sp. PCC 8801 1265 0 0 1293 Cyanothece sp. PCC 8802 1 395962 strain 92682 2 no rank 1000 0 1000 Halothece 1 76023 2 genus 10 0 0 990 2632878 1 no rank 0 species 1 65093 990 Halothece sp. PCC 7418 1890449 4 family 1 Microcystaceae 5947 28 0 0 41 5919 Microcystis 1 genus 1125 3 0 1126 1 species Microcystis aeruginosa 4272 1606 no rank 2643300 1 0 species 1967666 1 Microcystis sp. MC19 1606 0 0 71 family 8 1890464 14703 Chroococcaceae 1 7 0 268175 2 genus 8235 Chondrocystis 1 8228 2648896 1 no rank 0 0 1 2005460 species 8228 Chondrocystis sp. NIES-4102 1 5048 Geminocystis 3 669357 genus 27 0 2 2625037 no rank 5021 0 0 Geminocystis sp. NIES-3708 2934 species 1615909 1 0 species 1617448 1 Geminocystis sp. NIES-3709 2087 1349 Gloeocapsa 1 102231 2 genus 1 0 0 no rank 1 2623012 1348 0 Gloeocapsa sp. PCC 7428 1348 species 1 1173026 0 157 35435 Oscillatoriales 1 order 1150 21 family 5 1892252 1 24575 Microcoleaceae 0 37 11 0 44471 2 genus 1 981 Microcoleus 1 2642155 no rank 970 0 0 species 1173027 1 970 Microcoleus sp. PCC 7113 23557 Trichodesmium 1 2 1205 genus 8 0 0 23549 Trichodesmium erythraeum species 1 1206 40 0 Cyanothecaceae 642 1 1892249 3 family 602 Cyanothece 1 2 43988 genus 77 0 525 no rank 2649277 1 0 0 Cyanothece sp. PCC 7425 525 species 395961 1 1 527 Coleofasciculaceae family 3 1892251 0 26 5 0 2 63132 genus 1 501 Geitlerinema 0 no rank 1 2648775 496 496 Geitlerinema sp. PCC 7407 species 1 1173025 0 0 9 family 3 1892255 Gomontiellaceae 1550 1 0 1 genus 2 241421 Crinalium 1541 1 species 241425 1 1540 Crinalium epipsammum 0 family 1892254 6 1 Oscillatoriaceae 7984 0 72 genus 1155738 2 4320 Moorea 1 0 21 0 1155739 1 species 4299 Moorea producens 1 3592 Oscillatoria genus 3 1158 0 18 1 482564 species Oscillatoria nigro-viridis 1745 0 1829 Oscillatoria acuminata species 118323 1 0 10 0 1 7698 Pleurocapsales 8 52604 order 20 0 3 1890500 family 1202 Hyellaceae 1 Pleurocapsa 1182 1 genus 2 44474 0 3 species 54308 1 1179 Pleurocapsa minor 0 0 21 1 6486 Dermocarpellaceae family 4 1890498 27 0 1 Stanieria 6465 102115 3 genus 0 no rank 2642663 1 3836 species 1807358 1 3836 Stanieria sp. NIES-3757 0 0 2602 Stanieria cyanosphaera species 102116 1 0 no rank 1983111 1 1143 0 cyanobacterium endosymbiont of Epithemia turgida 1143 species 1 718217 0 32 440560 Actinobacteria 1 phylum 651 201174 0 4 class 84992 7 Acidimicrobiia 2355 1 21 0 84993 6 order 2351 Acidimicrobiales 1 0 19 family 3 84994 698 Acidimicrobiaceae 1 genus 2 53634 Acidimicrobium 679 1 0 12 Acidimicrobium ferrooxidans 667 species 53635 1 0 0 family 2448023 2 1632 Ilumatobacter 1632 1 genus 2 682522 0 13 0 1619 Ilumatobacter coccineus 1 467094 species class 5 1497346 1 5582 Thermoleophilia 0 2 39 0 1 5580 Solirubrobacterales 4 588673 order 6 0 3 320583 family Conexibacteraceae 5541 1 genus 2 191494 1 Conexibacter 5535 0 16 0 species 1 191495 5519 Conexibacter woesei 1505 1752188 4 no rank 0 1 1848754 species Actinobacteria bacterium IMCC19121 493 0 1848255 1 species 263 Actinobacteria bacterium IMCC25003 0 species 1 1848755 Actinobacteria bacterium IMCC26077 296 0 Actinobacteria bacterium IMCC26103 453 species 1 1848756 0 0 7 class 84995 6 1062 Rubrobacteria 1 1055 Rubrobacterales 1 5 84996 order 27 0 22 0 1028 Rubrobacteraceae 1 4 84997 family 0 9 1 1006 Rubrobacter genus 3 42255 49319 1 species Rubrobacter xylanophilus 522 0 species 42256 1 Rubrobacter radiotolerans 475 0 0 1308 423763 Actinobacteria 1 class 598 1760 0 24 8439 Streptosporangiales 1 order 85012 16 1 3418 Nocardiopsaceae 7 83676 family 26 0 1 Nocardiopsis 2969 2013 4 genus 21 0 0 53437 1 species Nocardiopsis alba 725 0 species 280236 1 Nocardiopsis gilva 920 1303 Nocardiopsis dassonvillei 2014 1 species 0 0 5 1 Thermobifida 423 genus 83677 2 0 species 1 2021 418 Thermobifida fusca 4131 Streptosporangiaceae 1 family 2004 5 0 33 13 0 2 83681 genus 1 Nonomuraea 2418 2593643 1 no rank 2405 0 2405 Nonomuraea sp. ATCC 55076 species 1 1909395 0 0 7 1 Streptosporangium 1680 genus 2 2000 0 species 2001 1 Streptosporangium roseum 1673 0 16 family 2012 3 Thermomonosporaceae 866 1 genus 2019 2 1 Thermomonospora 850 0 10 0 2020 1 species 840 Thermomonospora curvata 317 0 64815 Micrococcales 1 146 85006 order 1069 Brevibacteriaceae 1 family 3 85019 0 20 0 8 genus 1696 2 1 Brevibacterium 1049 1 1703 species Brevibacterium linens 1041 0 106 0 1268 40 family 1 15998 Micrococcaceae 0 3 Micrococcus 510 1 genus 1269 2 0 species 1 1270 Micrococcus luteus 507 0 1 438 Paenarthrobacter 1 genus 2 1742992 0 Paenarthrobacter aurescens 437 species 1 43663 0 genus 2078575 1 363 0 1 1618207 species 363 Arthrobacter sp. IHBB 11108 0 105 genus 1663 15 1 9224 Arthrobacter species 37928 1 469 Arthrobacter crystallopoietes 0 0 7747 no rank 235627 12 0 1 1118963 species 350 Arthrobacter sp. Rue61a 366 Arthrobacter sp. YN species 1 2020486 0 0 Arthrobacter sp. U41 512 1 1849032 species Arthrobacter sp. ERGS1:01 756 1704044 1 species 0 0 Arthrobacter sp. ZXY-2 329 species 1806905 1 2079227 1 species Arthrobacter sp. PGP41 3081 0 461 Arthrobacter sp. PAMC 25486 1494608 1 species 0 species 1652545 1 Arthrobacter sp. YC-RL1 332 0 0 333 Arthrobacter sp. ATCC 21022 species 1 1771959 290399 1 species 413 Arthrobacter sp. FB24 0 Arthrobacter sp. LS16 351 1 1690248 species 0 463 Arthrobacter sp. QXT-31 species 1 1357915 0 0 1 656366 species 903 Arthrobacter alpinus 0 2 Rothia 523 1 genus 3 32207 364 Rothia mucilaginosa 43675 1 species 0 species 1 2047 Rothia dentocariosa 157 0 Neomicrococcus 295 1 genus 2 1868332 0 1 294 Neomicrococcus aestuarii species 556325 1 0 15 0 1 1592 Kocuria 4 57493 genus 386 Kocuria rhizophila species 1 72000 0 0 species 1 71999 Kocuria palustris 495 Kocuria flava 696 species 446860 1 0 2 1742989 genus 1 525 Glutamicibacter 10 0 1 256701 species 515 Glutamicibacter arilaitensis 0 4 1742993 genus 1383 Pseudarthrobacter 1 12 0 0 555 Pseudarthrobacter phenanthrenivorans 361575 1 species 0 Pseudarthrobacter sulfonivorans 418 species 1 121292 398 Pseudarthrobacter chlorophenolicus 85085 1 species 0 6 0 800 Sinomonas 1 596707 2 genus 0 species 1 37927 Sinomonas atrocyanea 794 1 0 1645 2 genus 239 Renibacterium 1 0 1646 1 species Renibacterium salmoninarum 238 0 17 1 1813 Dermacoccaceae family 7 145357 670 Luteipulveratus 1 745364 2 genus 17 0 species 1 571913 Luteipulveratus mongoliensis 653 0 2 57495 genus Dermacoccus 679 1 11 0 0 species 1 1274 Dermacoccus nishinomiyaensis 668 11 0 57499 2 genus Kytococcus 447 1 1 1276 species Kytococcus sedentarius 436 0 Microbacteriaceae 24912 1 49 85023 family 142 0 7 0 2 337004 genus 459 Microcella 1 0 1 279828 species 452 Microcella alkaliphila 0 genus 1 1705353 194 0 194 Aurantimicrobium minutum species 708131 1 0 2 3317 Frondihabitans 1 genus 447237 2 0 no rank 1 2626248 3315 0 3315 Frondihabitans sp. PAMC 28766 species 1795630 1 320 Pontimonas 1 1434032 2 genus 1 0 0 species 1159327 1 Pontimonas salivibrio 319 33882 14 genus 8435 Microbacterium 1 113 0 512 Microbacterium chocolatum species 1 84292 0 745 Microbacterium testaceum 1 2033 species 0 0 no rank 2609290 8 5202 0 Microbacterium sp. str. 'China' 579 species 1 2103230 0 1 1714373 species 1019 Microbacterium sp. No. 7 Microbacterium sp. CGR1 588 species 1696072 1 0 0 species 1 367477 Microbacterium sp. XT11 578 0 species 1 1938334 Microbacterium sp. TPU 3598 559 species 1795053 1 Microbacterium sp. PAMC 28756 572 0 0 1906742 1 species 811 Microbacterium sp. BH-3-3-3 Microbacterium sp. 1.5R 496 1 1916917 species 0 0 607 Microbacterium aurum species 36805 1 0 species 300019 1 Microbacterium paludicola 544 0 1 162426 species 712 Microbacterium hominis 5 0 1 Leifsonia 1399 2 110932 genus 0 1394 Leifsonia xyli species 1575 1 33886 3 genus 1 Rathayibacter 1118 6 0 1 145458 species 553 Rathayibacter toxicus 0 0 species 1 33888 Rathayibacter tritici 559 5 0 949 Agromyces 1 2 33877 genus 0 species 453304 1 944 Agromyces aureus 2034 4 genus 2223 Curtobacterium 1 19 0 Curtobacterium pusillum 826 1 69373 species 0 0 1378 2 257496 no rank 0 1905847 1 species 596 Curtobacterium sp. BH-2-1-1 782 Curtobacterium sp. MR_MD2014 1 1561023 species 0 2 0 Cnuibacter 726 1 1759331 2 genus 0 species 1 1619308 Cnuibacter physcomitrellae 724 69578 3 genus Cryobacterium 1124 1 13 0 0 Cryobacterium arcticum 608 species 670052 1 0 1 2649013 no rank 503 0 1978566 1 species 503 Cryobacterium sp. LW097 1 Clavibacter 3382 genus 1573 6 0 70 1 Clavibacter michiganensis 3312 species 28447 5 0 673 subspecies 1 33014 Clavibacter insidiosus 566 0 592 Clavibacter nebraskensis subspecies 31963 1 0 0 Clavibacter capsici 630 subspecies 1 1874630 subspecies 31964 1 Clavibacter sepedonicus 851 0 no rank 3 1655488 514 0 514 1655489 3 clade 0 0 10 genus 3 529883 514 Rhodoluna 1 0 Candidatus Rhodoluna planktonica 272 species 1 535712 232 Rhodoluna lacicola 1 529884 species 0 2 0 518733 2 genus 610 Microterricola 1 412690 1 species 608 Microterricola viridarii 0 1 Sanguibacteraceae 974 3 145360 family 6 0 2 60919 genus 1 Sanguibacter 968 2 0 species 1 60920 966 Sanguibacter keddieii 0 2 0 3 85022 family 190 Jonesiaceae 1 0 2 1 Jonesia 188 genus 43673 2 1 43674 species 186 Jonesia denitrificans 0 9 85021 family 1 3122 Intrasporangiaceae 24 0 743 Intrasporangium 1 53357 2 genus 4 0 0 53358 1 species Intrasporangium calvum 739 0 1 genus 265976 2 Serinicoccus 766 1 species 1 1758689 765 Serinicoccus sp. JLT9 0 0 20 genus 2 53457 1 Janibacter 831 species 857417 1 811 Janibacter indicus 0 2 267408 genus 1 Arsenicicoccus 758 15 0 743 no rank 2663846 1 0 0 Arsenicicoccus sp. oral taxon 190 743 1658671 1 species 1 3384 Cellulomonadaceae family 85016 6 0 13 1707 5 genus 3371 Cellulomonas 1 32 0 913 Cellulomonas flavigena 1711 1 species 0 1 1708 species Cellulomonas fimi 946 0 0 770 1 2620175 no rank 0 species 1 2003551 770 Cellulomonas sp. PSBB021 0 1 11 species 710 Cellulomonas gilvus 427 85018 2 family 0 2 1862 genus 1 Dermatophilus 427 2 0 0 species 1863 1 425 Dermatophilus congolensis family 3 125316 1 Beutenbergiaceae 1057 0 1 1 Beutenbergia 1056 84756 2 genus 9 0 0 84757 1 species Beutenbergia cavernae 1047 0 577468 1 no rank 212 genus 2038 1 212 0 0 Tropheryma whipplei 212 species 2039 1 family 10 85020 1 6374 Dermabacteraceae 0 12 0 18 1 Devriesea 402 genus 2 472568 Devriesea agamarum 384 species 1 472569 0 genus 1 36739 312 0 Dermabacter vaginalis 312 1630135 1 species 0 47 0 43668 6 genus 1 Brachybacterium 5648 0 Brachybacterium sp. VM2412 2802 species 2017484 1 0 43669 1 species 743 Brachybacterium faecium 2623841 1 no rank 748 0 Brachybacterium sp. P6-10-X1 748 1 1903186 species 0 687 Brachybacterium ginsengisoli 1331682 1 species 0 0 621 Brachybacterium sp. VR2415 2017485 1 species 27 0 9 85017 family 1 4966 Promicromonosporaceae 0 14 2034 Cellulosimicrobium 1 genus 3 157920 0 972 Cellulosimicrobium cellulans 1710 1 species no rank 1 2624466 1048 0 1048 Cellulosimicrobium sp. TH-20 1 1980001 species 0 15 0 Isoptericola 1941 1 3 254250 genus 0 139208 1 species 893 Isoptericola variabilis 0 Isoptericola dokdonensis 1033 species 372663 1 0 3 1 964 Xylanimonas genus 186188 2 0 species 186189 1 Xylanimonas cellulosilytica 961 4735 Actinomycetales 1 order 2037 20 0 9 19 2049 family Actinomycetaceae 4726 1 41 0 genus 2 1653174 Actinotignum 189 1 0 1 0 188 Actinotignum schaalii 59505 1 species 66 0 1654 9 genus 3409 Actinomyces 1 1 1960083 species 389 Actinomyces gaoshouyii 0 0 1852377 1 species Actinomyces pacaensis 168 0 2609248 3 no rank 1471 species 1 712122 604 Actinomyces sp. oral taxon 414 0 1851395 1 species Actinomyces sp. Chiba101 491 0 1 2081702 species 376 Actinomyces sp. oral taxon 897 0 0 species 1 1912795 Actinomyces sp. VUL4_3 187 111015 1 species Actinomyces radicidentis 725 0 species 544580 1 403 Actinomyces oris 0 0 5 genus 2 2050 1 387 Mobiluncus 0 1 2051 species 382 Mobiluncus curtisii 0 6 genus 2 28263 208 Arcanobacterium 1 202 Arcanobacterium haemolyticum 1 28264 species 0 2 1069494 genus 272 Trueperella 1 3 0 0 1661 1 species Trueperella pyogenes 269 220 2529408 1 genus 0 0 1 52773 species 220 Actinomyces meyeri 979 order 3 85014 0 979 Glycomycetaceae 1 family 3 85034 0 17 283810 2 genus 1 Stackebrandtia 962 3 0 0 species 1 283811 959 Stackebrandtia nassauensis 0 2 order 4 1643684 Nakamurellales 917 1 6 0 915 Nakamurellaceae 1 85031 3 family 0 5 1 Nakamurella 909 genus 53460 2 species 1 53461 904 Nakamurella multipartita 0 order 1643682 8 2990 Geodermatophilales 1 0 6 59 0 7 85030 family Geodermatophilaceae 2984 1 0 16 genus 2 38501 1 908 Blastococcus 0 138336 1 species 892 Blastococcus saxobsidens 5 0 1 Geodermatophilus 1013 2 1860 genus 1 1861 species Geodermatophilus obscurus 1008 0 88138 2 genus 1 1004 Modestobacter 4 0 species 1 477641 Modestobacter marinus 1000 0 622452 4 order 1177 Kineosporiales 1 2 0 family 83778 3 1 1175 Kineosporiaceae 0 5 1 Kineococcus 1170 genus 33981 2 0 6 1 131568 species Kineococcus radiotolerans 1164 0 8036 Bifidobacteriales 1 26 85004 order 23 0 8013 Bifidobacteriaceae 1 31953 25 family 47 0 2 2701 genus 754 Gardnerella 1 2 0 0 species 2702 1 Gardnerella vaginalis 752 0 196 genus 1 196082 0 78258 1 species 196 Parascardovia denticolens 1 Scardovia 208 2 196081 genus 2 0 78259 1 species Scardovia inopinata 206 0 71 0 1 6808 Bifidobacterium 1678 19 genus 0 1 1681 species Bifidobacterium bifidum 363 0 1 1685 species 639 Bifidobacterium breve 0 species 1 638619 Bifidobacterium actinocoloniiforme 762 0 1 33905 species Bifidobacterium thermophilum 205 species 1680 1 Bifidobacterium adolescentis 271 0 0 Bifidobacterium indicum 174 1691 1 species 28025 1 species Bifidobacterium animalis 356 0 species 35760 1 516 Bifidobacterium choerinum 0 Bifidobacterium dentium 349 species 1 1689 0 0 Bifidobacterium scardovii 394 1 158787 species species 28026 1 243 Bifidobacterium pseudocatenulatum 0 0 264 Bifidobacterium asteroides 1684 1 species 0 230 Bifidobacterium angulatum species 1683 1 122 0 1 Bifidobacterium catenulatum 398 1686 2 species 0 276 Bifidobacterium kashiwanohense subspecies 1 630129 species 1694 1 Bifidobacterium pseudolongum 531 0 species 1 216816 Bifidobacterium longum 879 0 1687 1 species 163 Bifidobacterium coryneforme 0 1 Streptomycetales 149991 82 85011 order 226 0 Streptomycetaceae 149765 1 family 2062 81 0 347 1883 75 genus 139091 Streptomyces 1 1946 0 0 1 1783515 species Streptomyces sp. S10(2016) 1348 68249 1 species 2858 Streptomyces pactum 0 species 67267 1 Streptomyces alboflavus 1508 0 0 1 68202 species 1321 Streptomyces fulvissimus 0 1 1169025 species Streptomyces pratensis 957 1967 Streptomyces avermitilis species 33903 1 0 0 2 629295 species group 2524 0 1482558 1 species subgroup 1336 species 1 1908 Streptomyces globisporus 1336 0 1188 1 1482596 species subgroup 0 0 1188 Streptomyces griseus species 1 1911 1243 Streptomyces clavuligerus 1 1901 species 0 0 species 75293 1 5704 Streptomyces autolyticus Streptomyces sp. XZHG99 1161 2049881 1 species 0 0 species group 1477431 2 7537 0 1307 Streptomyces sampsonii 42239 1 species 0 6230 Streptomyces coelicolor species 1902 1 Streptomyces collinus 1246 1 42684 species 0 species 68570 1 13664 Streptomyces albulus 0 species 1889 1 1478 Streptomyces ambofaciens 0 0 1732 Streptomyces scabiei 1 1930 species 0 981 Streptomyces peucetius 1 1950 species 0 species 1888 1 3689 Streptomyces albus Streptomyces lincolnensis 1872 species 1915 1 0 0 species 1 92644 1761 Streptomyces malaysiensis 0 1107 Streptomyces cyaneogriseus 68192 1 species 1 1642299 species Streptomyces alfalfae 1746 0 Streptomyces griseochromogenes 1344 1 68214 species 0 553510 1 species Streptomyces gilvosporeus 1608 0 0 1907 1 species 1251 Streptomyces glaucescens 0 species 1 285473 1182 Streptomyces rubrolavendulae 0 no rank 2593676 24 36790 0 species 1649184 1 1188 Streptomyces sp. CFMR 7 Streptomyces sp. Mg1 1516 465541 1 species 0 Streptomyces sp. TN58 1129 234612 1 species 0 973 Streptomyces sp. PAMC 26508 species 1 1265601 0 Streptomyces sp. M56 2224 species 1 1495638 0 species 1812480 1 1775 Streptomyces sp. fd1-xmd 0 Streptomyces sp. Tue 6075 1266 1 1661694 species 0 1 2135430 species 2003 Streptomyces sp. P3 0 0 2059884 1 species Streptomyces sp. CMB-StM0423 1604 species 1 1984801 1394 Streptomyces sp. CLI2509 0 1098 Streptomyces sp. 4F 1 1751294 species 0 0 species 1561022 1 Streptomyces sp. CCM_MD2014 1180 0 1945 Streptomyces sp. 3211 species 1964449 1 0 1 1725411 species 1599 Streptomyces sp. CdTB01 species 1 1262452 1687 Streptomyces sp. 769 0 2094021 1 species 1138 Streptomyces sp. WAC00288 0 Streptomyces sp. MOE7 1311 species 1961713 1 0 Streptomyces sp. RTd22 1480 species 1841249 1 0 3281 Streptomyces sp. FR-008 species 1 206662 0 species 1 444103 Streptomyces sp. CNQ-509 1410 0 0 1 862751 species Streptomyces sp. SirexAA-E 1037 Streptomyces sp. Sge12 1598 1 1972846 species 0 970 Streptomyces sp. S8 1 1837283 species 0 species 1849967 1 1984 Streptomyces sp. SAT1 0 0 Streptomyces lydicus 3694 47763 1 species 1575 Streptomyces vietnamensis 1 362257 species 0 0 species 1 68280 Streptomyces violaceusniger 1537 0 1 54571 species Streptomyces venezuelae 2964 0 1191 Streptomyces pristinaespiralis species 38300 1 1 1437453 species 1123 Streptomyces leeuwenhoekii 0 0 species 1616117 1 2082 Streptomyces formicae 0 1 1038928 species Streptomyces xinghaiensis 1232 379067 1 species Streptomyces bingchenggensis 2491 0 species 1 1926 Streptomyces reticuli 1426 0 0 1355015 1 species 1248 Streptomyces pluripotens 1935 1 species 1137 Streptomyces violaceoruber 0 0 Streptomyces lividans 1372 1916 1 species 0 Streptomyces cattleya 1146 29303 1 species Streptomyces puniciscabiei 1130 164348 1 species 0 1076 Streptomyces chartreusis species 1 1969 0 Streptomyces niveus 1479 species 193462 1 0 0 species 1 146923 1184 Streptomyces parvulus 0 3403 Streptomyces hygroscopicus species 1912 1 1258 Streptomyces albireticuli species 1 1940 0 408015 1 species 842 Streptomyces xiamenensis 0 species 1971 1 1461 Streptomyces noursei 0 species 1 1914 1515 Streptomyces lavendulae 0 64 0 1 10327 Kitasatospora 2063 5 genus 1 2633591 no rank 1491 0 0 species 1 2018025 1491 Kitasatospora sp. MMS16-BH015 1 2066 species 2589 Kitasatospora setae 0 1 68173 species Kitasatospora albolonga 4927 0 0 1256 Kitasatospora aureofaciens species 1894 1 1 34687 Pseudonocardiales order 42 85010 0 45 270 0 1 Pseudonocardiaceae 34642 41 2070 family 1207 Kutzneria 1 genus 2 43356 0 7 0 1200 Kutzneria albida 1 43357 species 3 0 549 Saccharomonospora 1 1851 2 genus species 1 1852 546 Saccharomonospora viridis 0 1 Lentzea 1410 genus 2 165301 0 6 1404 Lentzea guizhouensis 1586287 1 species 0 0 2 genus 2 674734 1036 Alloactinosynnema 1 0 no rank 2636053 1 1034 0 1034 Alloactinosynnema sp. L-07 species 1 1653480 0 41 genus 6 65496 1 Actinoalloteichus 5124 no rank 2 2644606 2000 0 1078 Actinoalloteichus sp. GBA129-24 1612551 1 species 0 922 Actinoalloteichus sp. AHMU CJ021 species 2072503 1 0 1612552 1 species Actinoalloteichus sp. ADI127-7 1453 0 1 340345 species Actinoalloteichus hymeniacidonis 550 0 0 1470176 1 species Actinoalloteichus hoggarensis 1080 0 138 Pseudonocardia 8839 1 genus 1847 8 0 7281 no rank 2619320 6 0 species 1 1688404 1329 Pseudonocardia sp. EC080610-09 0 1216 Pseudonocardia sp. EC080619-01 1 1096856 species 0 Pseudonocardia sp. HH130629-09 1047 1641402 1 species 1069 Pseudonocardia sp. EC080625-04 species 1 1096868 0 0 Pseudonocardia sp. AL041005-10 1274 species 445576 1 0 species 1 1690815 1346 Pseudonocardia sp. HH130630-07 0 1420 Pseudonocardia dioxanivorans 240495 1 species 1 Saccharothrix 1505 2 2071 genus 8 0 species 103731 1 Saccharothrix espanaensis 1497 0 genus 3 40566 1 Actinosynnema 2906 0 31 Actinosynnema pretiosum 1414 1 42197 species 0 0 1461 Actinosynnema mirum species 1 40567 2 0 142577 2 genus Prauserella 896 1 0 Prauserella marina 894 species 530584 1 6 0 2 1835 genus 1 Saccharopolyspora 1173 0 1167 Saccharopolyspora erythraea 1836 1 species genus 7 1813 1 8390 Amycolatopsis 0 97 0 Amycolatopsis orientalis 2139 species 31958 1 species 33910 1 1612 Amycolatopsis mediterranei 0 0 2255 no rank 2618356 2 species 1911175 1 Amycolatopsis sp. BJA-103 1106 0 species 1 1896961 1149 Amycolatopsis sp. AA4 0 Amycolatopsis japonica 1215 species 1 208439 0 1072 Amycolatopsis methanolica 1 1814 species 0 8 0 Kibdelosporangium 1337 1 2029 2 genus 0 Kibdelosporangium phytohabitans 1329 species 860235 1 1643683 3 order 322 0 6 0 Acidothermaceae 322 1 85032 3 family 0 6 Acidothermus 316 1 genus 28048 2 310 Acidothermus cellulolyticus 28049 1 species 0 0 420 1 Corynebacteriales 95771 order 160 85007 0 20 Gordoniaceae 4580 1 family 85026 9 2053 8 genus 4560 Gordonia 1 66 0 84595 1 species 652 Gordonia polyisoprenivorans 0 Gordonia terrae 716 species 1 2055 0 0 species 2054 1 725 Gordonia bronchialis 0 species 1136941 1 607 Gordonia phthalatica 0 no rank 2657482 2 1179 0 1 2059875 species Gordonia sp. YC-JH1 489 0 Gordonia sp. KTR9 690 1 337191 species 615 Gordonia iterans species 1004901 1 0 0 113 family 85025 31 Nocardiaceae 25960 1 18372 Rhodococcus 1 genus 23 1827 0 423 species 1 1833 Rhodococcus erythropolis 1206 0 132919 1 species Rhodococcus jostii 1140 0 0 1830 1 species 1078 Rhodococcus ruber Rhodococcus qingshengii 609 1 334542 species 0 7087 192944 12 no rank 0 0 Rhodococcus sp. B7740 537 species 1 1564114 0 1 1653479 species Rhodococcus sp. PBTS 2 459 966 Rhodococcus sp. WB1 species 1033922 1 0 Rhodococcus sp. WMMA185 436 species 1 679318 0 species 1 1805827 Rhodococcus sp. MTM3W5.2 1052 0 0 650 Rhodococcus sp. PBTS 1 1 1653478 species 0 species 1 935199 Rhodococcus sp. p52 684 1 1723645 species 406 Rhodococcus sp. 008 0 species 1570939 1 597 Rhodococcus sp. 2G 0 1 1807790 species 386 Rhodococcus sp. BH4 0 0 1 1045808 species Rhodococcus sp. YL-1 440 species 1727214 1 474 Rhodococcus sp. H-CA8f 0 0 697 Rhodococcus rhodochrous 1829 1 species 0 species 1828 1 Rhodococcus fascians 651 103816 1 species Rhodococcus pyridinivorans 927 0 1 43767 species Rhodococcus hoagii 794 0 species 1 191292 942 Rhodococcus aetherivorans 0 species 37919 1 Rhodococcus opacus 2818 0 0 66 1 Nocardia 7475 genus 1817 7 species 37329 1 Nocardia farcinica 1193 0 0 1411 Nocardia cyriacigeorgica 1 135487 species 0 1 37330 species 906 Nocardia nova 2000 Nocardia brasiliensis species 1 37326 0 Nocardia seriolae 885 species 1 37332 0 455432 1 species 1014 Nocardia terpenica 0 0 no rank 1 697024 206 0 206 genus 1847725 1 0 species 1 1528099 Lawsonella clevelandensis 206 0 50 19775 Corynebacteriaceae 1 family 1653 52 19725 Corynebacterium 1 genus 1716 51 0 219 1 1721 species 250 Corynebacterium callunae 0 species 1 203263 Corynebacterium aquilae 403 0 0 Corynebacterium striatum 507 species 43770 1 species 161899 1 Corynebacterium singulare 246 0 Corynebacterium imitans 272 156978 1 species 0 species 1 65058 297 Corynebacterium ulcerans 0 species 1050174 1 183 Corynebacterium epidermidicanis 0 279 Corynebacterium urealyticum 43771 1 species 0 species 1718 1 785 Corynebacterium glutamicum 0 0 2 2624378 no rank 444 0 259 Corynebacterium sp. NML98-0116 species 702967 1 185 Corynebacterium sp. ATCC 6931 1 1487956 species 0 Corynebacterium lactis 221 1231000 1 species 0 355 Corynebacterium glyciniphilum species 1 1404244 0 Corynebacterium diphtheriae 445 1 1717 species 0 0 146827 1 species 270 Corynebacterium simulans 0 230 Corynebacterium camporealensis 161896 1 species 0 220 Corynebacterium stationis species 1705 1 0 575200 1 species 444 Corynebacterium maris 1 1121358 species Corynebacterium doosanense 352 0 0 Corynebacterium frankenforstense 524 species 1 1230998 366 Corynebacterium jeikeium 1 38289 species 0 299 Corynebacterium crudilactis 1652495 1 species 0 Corynebacterium halotolerans 495 1 225326 species 0 species 1408191 1 300 Corynebacterium deserti 0 species 92706 1 289 [Brevibacterium] flavum 0 0 species 1697 1 Corynebacterium ammoniagenes 208 305 Corynebacterium efficiens 152794 1 species 0 0 1 191493 species 482 Corynebacterium sphenisci 0 408 Corynebacterium terpenotabidum species 89154 1 Corynebacterium casei 247 species 1 160386 0 340 Corynebacterium glaucum 187491 1 species 0 555 Corynebacterium vitaeruminis species 1 38305 0 0 Corynebacterium falsenii 320 108486 1 species 0 1 161895 species Corynebacterium phocae 218 Corynebacterium ureicelerivorans 236 1 401472 species 0 0 species 35755 1 Corynebacterium kutscheri 282 0 1 1223514 species 596 Corynebacterium humireducens 0 species 1 28028 Corynebacterium flavescens 266 0 1 1072256 species 3225 Corynebacterium uterequi 349751 1 species 500 Corynebacterium marinum 0 329 Corynebacterium cystitidis 1 35757 species 0 species 258224 1 165 Corynebacterium resistens 0 Corynebacterium mustelae 218 species 1 571915 0 0 Corynebacterium aurimucosum 242 species 169292 1 0 species 42817 1 394 Corynebacterium argentoratense 0 species 161879 1 123 Corynebacterium kroppenstedtii 0 species 1719 1 228 Corynebacterium pseudotuberculosis 0 530 Corynebacterium variabile species 1 1727 0 331 Corynebacterium testudinoris 1 136857 species 0 191610 1 species 282 Corynebacterium atypicum 0 90 1 Mycobacteriaceae 41588 family 56 1762 0 5793 670516 5 genus 0 545 Mycobacterium immunogenum species 1 83262 1520670 1 species Mycobacterium stephanolepidis 429 0 1 36809 species Mycobacterium abscessus 3904 0 0 1774 1 species Mycobacterium chelonae 510 0 1 1578165 species 405 Mycobacterium saopaulense 376 genus 1 697025 0 1 639313 species 376 Hoyosella subflava 0 1866885 13 genus 10398 0 868 Mycobacterium phlei 1 1771 species 0 0 species 1810 1 Mycobacterium vaccae 918 815 Mycobacterium goodii species 134601 1 0 956 Mycobacterium smegmatis species 1772 1 0 625 Mycobacterium fortuitum 1 1766 species 0 species 1804 1 1069 Mycobacterium gilvum 0 Mycobacterium rhodesiae 612 1 36814 species 0 Mycobacterium aurum 994 1791 1 species 0 Mycobacterium neoaurum 577 species 1 1795 0 species 1 758802 602 Mycobacterium litorale 0 1 1800 species 885 Mycobacterium chubuense 0 Mycobacterium thermoresistibile 641 1797 1 species 0 0 species 110539 1 Mycobacterium vanbaalenii 836 0 genus 2 1073531 1566 species 875328 1 807 Mycobacterium sinense 0 0 1 1788 species Mycobacterium terrae 759 1031 0 23365 Mycobacterium 1 1763 34 genus species 1 29311 368 Mycobacterium haemophilum 0 1232 Mycobacterium marinum species 1 1781 0 Mycobacterium leprae 146 1 1769 species 0 0 585 species group 1 2249310 585 Mycobacterium shigaense 722731 1 species 0 949 Mycobacterium dioxanotrophicus species 1 482462 0 120793 8 species group 6409 0 0 species 1 339268 683 Mycobacterium colombiense 4 1767 species 1 1700 Mycobacterium intracellulare 462 0 0 subspecies 1203599 1 Mycobacterium yongonense 334 693 Mycobacterium chimaera subspecies 222805 1 0 subspecies 1 35617 Mycobacterium indicus pranii 211 0 208 Mycobacterium paraintracellulare 1138383 1 species 0 0 Mycobacterium avium 3338 1764 1 species 0 Mycobacterium marseillense 480 1 701042 species 724 Mycobacterium kansasii 1768 1 species 0 0 2089 species group 77643 4 0 78331 1 species 380 Mycobacterium canettii 601 0 1 1709 Mycobacterium tuberculosis 1773 3 species 1 33894 biotype Mycobacterium africanum 544 0 1 1765 biotype 564 Mycobacterium bovis 0 1809 1 species 619 Mycobacterium ulcerans 0 677 Mycobacterium liflandii 1 261524 species 0 0 13 2642494 no rank 8536 0 Mycobacterium sp. EPa45 568 1 1545728 species 0 Mycobacterium sp. VKM Ac-1817D 617 species 1273687 1 626 Mycobacterium sp. JLS 1 164757 species 0 species 164756 1 Mycobacterium sp. MCS 623 0 0 species 1 189918 Mycobacterium sp. KMS 661 Mycobacterium sp. WY10 742 1 1920667 species 0 657 Mycobacterium sp. PYR15 species 1 2051552 0 0 1 1168287 species Mycobacterium sp. MOTT36Y 250 1 212767 species Mycobacterium sp. JS623 1273 0 0 726 Mycobacterium sp. YC-RL4 species 1682113 1 0 Mycobacterium sp. QIA-37 368 1 1561223 species 1570328 1 species Mycobacterium sp. NRRL B-3805 577 0 species 1 1879023 Mycobacterium sp. djl-10 848 0 family 4 85029 Dietziaceae 1174 1 0 2 1 Dietzia 1172 37914 3 genus 5 0 no rank 1 2617939 759 0 0 species 712270 1 Dietzia sp. oral taxon 368 759 species 1 499555 408 Dietzia timorensis 0 0 4 1 1678 Tsukamurellaceae family 4 85028 17 0 2060 3 genus 1674 Tsukamurella 1 species 1 57704 Tsukamurella tyrosinosolvens 1019 0 0 species 1 2061 Tsukamurella paurometabola 638 0 390 2 316606 family 0 4 genus 286801 2 1 Segniliparus 390 0 386 Segniliparus rotundus 286802 1 species 0 28 order 12 2039638 1 Candidatus Nanopelagicales 5517 family 11 2162846 5489 0 1 Candidatus Planktophila 2987 7 622681 genus 36 0 481 Candidatus Planktophila lacus species 1884913 1 0 491 Candidatus Planktophila vernalis species 1 1884907 0 0 1 573600 species 534 Candidatus Planktophila limnetica 0 species 1884905 1 534 Candidatus Planktophila versatilis 0 species 1 1884914 Candidatus Planktophila dulcis 643 0 1884904 1 species 268 Candidatus Planktophila sulfonica 0 25 1 Candidatus Nanopelagicus 2502 genus 4 2039639 0 1884916 1 species Candidatus Nanopelagicus abundans 889 860 Candidatus Nanopelagicus limnes species 1884634 1 0 0 Candidatus Nanopelagicus hibericus 728 1884915 1 species 3 0 4 622450 order 1 613 Actinopolysporales 0 1 family 3 622451 Actinopolysporaceae 610 1 0 2 genus 1849 2 609 Actinopolyspora 1 0 Actinopolyspora erythraea 607 1 414996 species order 85009 33 13206 Propionibacteriales 1 0 79 19 31957 family 6249 Propionibacteriaceae 1 66 0 Propionibacterium 1144 1 genus 3 1743 0 6 0 no rank 1 2608905 179 0 Propionibacterium sp. oral taxon 193 179 671223 1 species 0 species 1744 1 Propionibacterium freudenreichii 959 0 genus 2801844 1 372 Pseudopropionibacterium propionicum 372 species 1750 1 0 7 0 2 1912215 genus Acidipropionibacterium 779 1 1748 1 species Acidipropionibacterium acidipropionici 772 0 153 203133 1 genus 0 no rank 1 2633994 153 0 0 153 Propionimicrobium sp. Marseille-P3275 1 1871034 species 11 0 1 943 Cutibacterium 4 1912216 genus Cutibacterium acnes 309 species 1 1747 0 247 Cutibacterium granulosum 1 33011 species 0 Cutibacterium avidum 376 species 33010 1 0 Tessaracoccus 2121 1 72763 5 genus 29 0 species 1 1332264 Tessaracoccus aquimaris 593 0 0 species 1610493 1 411 Tessaracoccus flavus 0 584 no rank 2635419 1 1909732 1 species 584 Tessaracoccus sp. T2.5-30 0 0 species 399497 1 504 Tessaracoccus flavescens 0 6 genus 29404 2 1 671 Microlunatus 0 1 29405 species 665 Microlunatus phosphovorus 59 0 85015 13 family 1 Nocardioidaceae 6878 genus 2 2044 1 1404 Pimelobacter 0 12 1392 Pimelobacter simplex species 1 2045 0 1044 Kribbella 1 182639 2 genus 23 0 1 182640 species 1021 Kribbella flavida 0 83 0 2961 Nocardioides 1 4 1839 genus 1158 Nocardioides dokdonensis 450734 1 species 0 1011 1 2615069 no rank 0 Nocardioides sp. JS614 1011 196162 1 species 0 0 709 Nocardioides sp. 78 species 1 2045452 9 0 2 116071 genus 598 Micropruina 1 Micropruina glycogenica 589 1 75385 species 0 2040 2 genus 812 Aeromicrobium 1 3 0 0 2041 1 species 809 Aeromicrobium erythreum 0 26 order 414714 4 1 Catenulisporales 6322 Catenulisporaceae 6296 1 414877 3 family 37 0 414878 2 genus 1 6259 Catenulispora 19 0 Catenulispora acidiphila 6240 species 1 304895 0 21 0 85008 20 order 1 14924 Micromonosporales 145 0 14903 Micromonosporaceae 1 28056 19 family 0 44 genus 673534 4 3862 Plantactinospora 1 3818 no rank 2631981 3 0 species 2071627 1 1479 Plantactinospora sp. BB1 0 2024580 1 species Plantactinospora sp. KBS50 1107 0 0 Plantactinospora sp. BC1 1232 2108470 1 species 0 23 1 Micromonospora 3233 genus 4 1873 no rank 1 2617518 1129 0 species 648999 1 1129 Micromonospora sp. L5 0 species 1003110 1 900 Verrucosispora maris 0 0 1181 Micromonospora aurantiaca species 47850 1 0 24 1 Salinispora 1358 genus 3 168694 0 643 Salinispora tropica species 168695 1 0 691 Salinispora arenicola species 1 168697 Actinoplanes 6299 1 genus 1865 6 0 74 0 1866 1 species Actinoplanes missouriensis 1330 0 Actinoplanes friuliensis 1161 1 196914 species 3734 2626549 3 no rank 0 0 1312 Actinoplanes sp. N902-109 1 649831 species 0 species 1 2033844 1211 Actinoplanes sp. SE50 0 species 134676 1 1211 Actinoplanes sp. SE50/110 0 genus 84593 1 6 Verrucosispora 559 no rank 52018 1 0 0 1650658 1 species 559 Actinobacteria bacterium IMCC26256 68 0 7 85013 order 1 7825 Frankiales family 6 74712 1 Frankiaceae 7757 0 52 Frankia 7705 1 genus 5 1854 0 39 1494 1 2632575 no rank 0 1494 Frankia sp. EAN1pec species 298653 1 0 0 1357 Frankia casuarinae species 106370 1 0 3458 Frankia alni species 1 1859 Frankia inefficax 1357 species 1 298654 0 1643818 2 no rank 630 0 genus 2 147067 Thermobispora 630 1 0 4 Thermobispora bispora 626 1 2006 species 0 0 21 class 30 84998 6261 Coriobacteriia 1 order 15 1643822 1 Eggerthellales 3762 0 31 48 0 1 3731 Eggerthellaceae 14 1643826 family 302 genus 79603 1 0 0 302 Denitrobacterium detoxificans species 79604 1 19 0 3 644652 genus 1 Gordonibacter 1157 0 1 1335613 species Gordonibacter urolithinfaciens 582 1 1841863 species Gordonibacter massiliensis 556 0 0 2 1 941 Eggerthella genus 84111 3 0 2648737 1 no rank 242 species 1 502558 Eggerthella sp. YY7918 242 0 0 Eggerthella lenta 697 1 84112 species 0 341 genus 1 84108 341 Slackia heliotrinireducens species 1 84110 0 genus 1 1981050 385 0 Phoenicibacter massiliensis 385 species 1 1944646 0 Adlercreutzia 366 1 genus 447020 2 0 2 364 Adlercreutzia equolifaciens 1 446660 species 0 191 Cryptobacterium 1 84162 2 genus 2 0 1 84163 species 189 Cryptobacterium curtum 0 order 84999 14 2478 Coriobacteriales 1 0 20 Atopobiaceae 1644 1 family 7 1643824 0 7 1 1292 Olsenella 133925 4 genus 10 0 Olsenella uli 280 species 133926 1 0 0 486 Olsenella sp. Marseille-P2300 species 1805478 1 2638792 1 no rank 516 0 0 516 Olsenella sp. oral taxon 807 712411 1 species 0 1 1380 genus Atopobium 1 0 genus 1 2767353 344 344 Atopobium parvulum 1 1382 species 0 6 0 6 84107 family 814 Coriobacteriaceae 1 315 no rank 1 84113 0 Coriobacteriaceae bacterium 68-1-3 315 1 1531429 species 0 0 6 1 Coriobacterium 213 genus 33870 2 species 1 33871 207 Coriobacterium glomerans 0 280 Collinsella 1 genus 102106 2 0 7 273 Collinsella aerofaciens 74426 1 species 0 0 36 1297 phylum 12170 class 188787 36 1 12170 Deinococci 0 50 0 order 3 2762275 662 3 0 332247 3 family 1 662 Trueperaceae 2 332248 genus Truepera 659 1 5 0 0 332249 1 species Truepera radiovictrix 654 1 6173 Deinococcales 118964 15 order 57 0 25 0 14 183710 family 1 6116 Deinococcaceae 1298 13 genus 6091 Deinococcus 1 88 0 562 Deinococcus maricopensis 1 309887 species 0 1 68909 species 386 Deinococcus geothermalis 0 0 1 502394 species 637 Deinococcus gobiensis 435 Deinococcus puniceus 1182568 1 species 0 1 2623546 no rank 449 0 species 1 2080419 Deinococcus sp. NW-56 449 0 1 1299 species 429 Deinococcus radiodurans 0 1 310783 species 353 Deinococcus deserti 0 0 546 Deinococcus soli Cha et al. 2016 species 1 1309411 1 55148 species Deinococcus proteolyticus 794 0 0 523 Deinococcus swuensis 1182571 1 species 0 1 432329 species Deinococcus peraridilitoris 429 460 Deinococcus actinosclerus species 1 1768108 0 0 32 order 17 68933 Thermales 5285 1 5253 Thermaceae 1 family 16 188786 0 28 genus 3 65551 856 Meiothermus 1 0 3 52022 1 species Meiothermus silvanus 399 0 0 277 1 species 454 Meiothermus ruber 208447 2 genus Oceanithermus 628 1 4 0 0 Oceanithermus profundus 624 1 187137 species 186191 2 genus 1 Marinithermus 424 8 0 0 416 Marinithermus hydrothermalis 186192 1 species genus 8 270 1 3317 Thermus 0 66 0 262 Thermus scotoductus species 37636 1 0 1 456163 species 397 Thermus parvatiensis 0 Thermus brockianus 309 56956 1 species 0 372 2619321 1 no rank Thermus sp. CCB_US3_UF1 372 species 1 1111069 0 species 271 1 414 Thermus aquaticus 0 Thermus thermophilus 1035 274 1 species 0 0 species 56957 1 462 Thermus oshimai 2 1859062 no rank 345 0 genus 262406 2 1 Thermobaculum 345 0 2 0 343 Thermobaculum terrenum 166501 1 species phylum 200795 44 1 Chloroflexi 8179 0 5 Chloroflexia 2870 1 class 32061 10 0 4 0 13 order 32064 9 Chloroflexales 2866 1 0 1192 suborder 1508595 3 3 1508635 family 1192 0 1192 Roseiflexus 1 genus 3 120961 0 6 703 Roseiflexus castenholzii species 120962 1 0 0 no rank 2609473 1 483 0 483 Roseiflexus sp. RS-1 1 357808 species 0 1661 5 1508594 suborder 0 4 family 1106 5 1 1661 Chloroflexaceae 1 Chloroflexus 1657 genus 1107 4 0 14 0 Chloroflexus aggregans 803 species 152260 1 420 0 840 Chloroflexus aurantiacus 1 2 1108 species 0 420 Chloroflexus sp. Y-400-fl strain 1 480224 class 475962 5 791 Caldilineae 1 0 4 order 475963 4 1 Caldilineales 787 0 4 1 0 Caldilineaceae 783 1 475964 3 family 782 Caldilinea 1 genus 233191 2 0 5 0 species 133453 1 777 Caldilinea aerophila 7 0 8 189775 class 1 Thermomicrobia 1082 800 subclass 4 85000 0 1 800 Sphaerobacterales 4 85001 order 6 0 0 794 suborder 3 255728 0 5 Sphaerobacteraceae 794 1 family 3 85002 0 2 Sphaerobacter 789 1 genus 2056 2 0 2057 1 species 787 Sphaerobacter thermophilus Thermomicrobiales 275 1 order 3 189776 0 6 0 family 189777 2 269 499 2 genus Thermomicrobium 269 1 1 0 0 500 1 species 268 Thermomicrobium roseum Anaerolineae 914 1 class 6 292625 0 4 2 0 5 292629 order 910 Anaerolineales 1 292628 4 family 1 Anaerolineaceae 908 8 0 0 213 1324991 1 no rank 1889813 1 species Anaerolineaceae bacterium oral taxon 439 213 0 325 genus 1 233189 0 0 species 1 167964 Anaerolinea thermophila 325 genus 2019482 1 362 0 0 362 Brevefilum fermentans species 1 1986204 1 0 301297 9 class 1230 Dehalococcoidia 1 genus 670486 3 404 Dehalogenimonas 1 0 10 1 552810 species Dehalogenimonas lykanthroporepellens 172 0 0 Dehalogenimonas formicexedens 222 1 1839801 species 825 Dehalococcoidales 1 5 1202465 order 4 0 3 0 4 1202464 family 821 Dehalococcoidaceae 1 genus 61434 3 818 Dehalococcoides 1 0 5 0 609 Dehalococcoides mccartyi species 61435 1 1 237581 no rank 204 0 204 Dehalococcoides sp. UCH007 1522671 1 species 0 3 0 Ardenticatenia 1287 1 5 1382928 class 4 1382929 order 1284 Ardenticatenales 1 12 0 0 2 family 1382930 3 1 1272 Ardenticatenaceae 0 7 genus 1988031 2 1270 Candidatus Promineofilum 1 0 1 1806508 species 1263 Candidatus Promineofilum breve 536 4 67819 phylum 0 536 Fimbriimonadia 1 1663419 4 class 12 0 order 1663425 3 524 0 1663426 3 family 524 Fimbriimonadaceae 1 4 0 Fimbriimonas 520 1 1005038 2 genus 4 0 species 1005039 1 516 Fimbriimonas ginsengisoli 0 0 4 2498710 clade 575 0 575 4 67814 phylum 0 3 class 4 693071 575 Caldisericia 1 693072 3 order 1 Caldisericales 572 1 0 2 693073 family 571 0 1 0 Caldisericum 571 1 693074 2 genus 0 1 693075 species Caldisericum exile 570 0 5 phylum 8 74152 2090 Elusimicrobia 1 3 0 1 1110 Endomicrobia 447830 5 class 0 1107 1783344 4 order Endomicrobiaceae 1107 1 family 1783343 4 0 2 genus 1408194 3 1 Endomicrobium 1105 0 2 597 Endomicrobium proavitum 1408281 1 species 0 species 1408204 1 Candidatus Endomicrobium trichonymphae 506 0 0 class 641853 1 414 order 1 641854 414 0 0 family 641876 1 414 genus 1 423604 414 0 414 Elusimicrobium minutum species 1 423605 0 0 no rank 99260 1 561 0 uncultured Termite group 1 bacterium 561 167965 1 species 6 68297 phylum 2106 0 1 Dictyoglomia 2106 class 6 203486 0 8 0 5 order 5 203487 1 Dictyoglomales 2098 1 0 203488 4 family 1 2093 Dictyoglomaceae 10 0 13 3 genus 2092 Dictyoglomus 1 1086 Dictyoglomus turgidum species 1 513050 0 species 1 14 Dictyoglomus thermophilum 996 0 3474 phylum 200940 8 0 5 0 8 67799 class Thermodesulfobacteria 3474 1 1 3469 Thermodesulfobacteriales 188710 7 order 6 0 16 0 Thermodesulfobacteriaceae 3463 1 188711 6 family Thermodesulfobacterium 2346 1 1740 3 genus 4 0 1692 Thermodesulfobacterium geofontis 1 1295609 species 0 species 1741 1 Thermodesulfobacterium commune 650 0 1 241192 genus 588 0 0 Thermodesulfatator indicus 588 species 1 171695 0 513 444090 1 genus 0 513 Caldimicrobium thiodismutans 1 1653476 species 0 34091 58 203691 phylum 96 0 203692 58 class 1 34091 Spirochaetia 0 62 1 21352 Spirochaetales order 136 41 1643685 17 family 13390 Borreliaceae 1 31 0 183 0 1 Borrelia 7942 8 138 genus Borrelia miyamotoi 1430 species 47466 1 0 0 656 Borrelia turicatae species 1 142 species 1 40834 2779 Borrelia duttonii 0 species 1 140 Borrelia hermsii 681 0 0 1 44449 species 1020 Borrelia recurrentis 1 141 species Borrelia parkeri 638 0 0 species 143 1 Borrelia anserina 555 genus 64895 8 Borreliella 5417 1 0 320 Borreliella valaisiana 484 species 1 62088 0 0 1 64897 species 756 Borreliella bissettii 0 139 1 species Borreliella burgdorferi 764 0 species 29518 1 749 Borreliella afzelii Borreliella bavariensis 504 664662 1 species 0 0 1179 Borreliella garinii species 1 29519 0 species 1 1674146 661 Borrelia mayonii 62 0 1 Spirochaetaceae 7900 137 23 family 0 8 genus 4 399320 1 Sphaerochaeta 676 1131703 1 species Sphaerochaeta globosa 208 0 species 1 1131707 228 Sphaerochaeta pleomorpha 0 232 Sphaerochaeta coccoides 1 273376 species 0 6 0 Spirochaeta 944 1 146 3 genus Spirochaeta africana 380 species 46355 1 0 Spirochaeta thermophila 558 154 1 species 0 genus 12 157 4274 Treponema 1 0 25 0 586 Treponema succinifaciens species 1 167 0 species 1 409322 506 Treponema pedis species 160 1 127 Treponema pallidum 0 0 587 Treponema putidum 221027 1 species 0 Treponema caldarium 411 species 1 215591 166 Treponema paraluiscuniculi species 53435 1 0 1 150829 species 258 Treponema azotonutricium 0 0 1 2638727 no rank 345 Treponema sp. OMZ 838 345 species 1539298 1 0 0 1 81028 species Treponema brennaborense 244 0 628 Treponema primitia 1 88058 species 0 1 158 species 391 Treponema denticola 0 454 1911556 1 genus Sediminispirochaeta smaragdinae 454 1 55206 species 0 4 0 1616789 2 genus Salinispira 1490 1 species 1307761 1 1486 Salinispira pacifica 0 18 0 1 7295 Brachyspirales 1643686 7 order 0 10 family 6 143786 1 7277 Brachyspiraceae 1 7267 Brachyspira genus 29521 5 0 46 2174 Brachyspira pilosicoli species 1 52584 0 Brachyspira intermedia 1674 species 84377 1 0 0 Brachyspira murdochii 1538 84378 1 species 1 159 species Brachyspira hyodysenteriae 1835 0 0 9 1643688 order 5348 1 Leptospiraceae 5348 170 9 family 45 0 1 453 Turneriella genus 338321 2 0 2 451 Turneriella parva species 1 29510 0 genus 6 171 1 Leptospira 4850 0 46 584 Leptospira santarosai 1 28183 species 0 28452 1 species 608 Leptospira alstonii 0 0 172 1 species Leptospira biflexa 860 944 Leptospira borgpetersenii 174 1 species 0 0 Leptospira interrogans 1808 1 173 species 337 phylum 4 2138240 0 0 5 337 Coprothermobacteria 1 class 2138243 4 order 3 2138246 1 332 Coprothermobacterales 0 6 0 2138247 2 family 326 Coprothermobacter 326 1 genus 2 68335 0 2 0 Coprothermobacter proteolyticus 324 species 35786 1 0 26 32066 phylum 43583 43583 Fusobacteriia 1 203490 26 class 40 0 1 43543 Fusobacteriales order 203491 25 0 50 1 34419 Fusobacteriaceae family 12 203492 0 29 123 0 9 848 genus 1 Fusobacterium 33230 0 5732 Fusobacterium periodonticum 1 860 species 0 Fusobacterium hwasookii 3178 species 1583098 1 0 3730 Fusobacterium varium species 856 1 0 1749 Fusobacterium mortiferum species 1 850 1 861 species Fusobacterium ulcerans 1914 0 715 Fusobacterium necrophorum species 859 1 0 species 849 1 Fusobacterium gonidiaformans 1071 0 0 Fusobacterium nucleatum 15018 851 1 species 1 1160 Ilyobacter genus 167639 2 0 1 0 1159 Ilyobacter polytropus species 1 167642 0 19 family 1129771 12 1 Leptotrichiaceae 9074 genus 32068 2 1100 Sebaldella 1 0 1 0 1 826 species 1099 Sebaldella termitidis 32067 5 genus Leptotrichia 5276 1 15 0 0 3904 2633022 3 no rank 0 1 712368 species 1401 Leptotrichia sp. oral taxon 498 0 1785996 1 species 1355 Leptotrichia sp. oral taxon 847 1148 Leptotrichia sp. oral taxon 212 species 1 712357 0 1 40542 species 1357 Leptotrichia buccalis 0 1 0 2 34104 genus Streptobacillus 1526 1 0 Streptobacillus moniliformis 1525 species 1 34105 Sneathia 1153 1 168808 2 genus 6 0 187101 1 species Sneathia amnii 1147 0 0 9174 200783 28 phylum class 28 187857 1 9174 Aquificae 0 23 3 0 1485951 6 order 1405 Desulfurobacteriales 1 family 558314 5 1402 Desulfurobacteriaceae 1 0 25 4 0 1 Thermovibrio 220 171868 2 genus 0 1 228745 species Thermovibrio ammonificans 216 1 1157 Desulfurobacterium genus 64159 2 0 4 Desulfurobacterium thermolithotrophum 1153 species 64160 1 0 1 7746 Aquificales order 21 32069 0 24 1 Aquificaceae 3775 64898 13 family 10 0 0 96 Hydrogenobaculum 2955 1 genus 168657 6 2859 no rank 2622382 5 0 Hydrogenobaculum sp. HO 567 547144 1 species 0 0 566 Hydrogenobaculum sp. SN species 547146 1 0 1 547145 species Hydrogenobaculum sp. SHO 566 0 species 1 380749 Hydrogenobaculum sp. Y04AAS1 594 0 Hydrogenobaculum sp. 3684 566 species 547143 1 0 genus 939 1 201 0 940 1 species Hydrogenobacter thermophilus 201 5 0 1 399 Thermocrinis 3 75905 genus 0 species 136094 1 Thermocrinis albus 234 1 75906 species Thermocrinis ruber 160 0 2713 2 genus Aquifex 210 1 4 0 0 206 Aquifex aeolicus 1 63363 species family 6 224027 1 Hydrogenothermaceae 3549 0 2 2741 Sulfurihydrogenibium 1 genus 3 212790 0 30 0 1 309806 species 1188 Sulfurihydrogenibium azorense 0 1523 no rank 1 2619248 0 species 1 436114 1523 Sulfurihydrogenibium sp. YO3AOP1 0 4 1 806 Persephonella genus 182899 2 0 1 309805 species 802 Persephonella marina 0 1 90150 no rank 398 0 1 412592 genus 398 0 species 412593 1 Thermosulfidibacter takaii 398 0 1113 no rank 2323 3 0 1113 clade 3 1783234 946 clade 95901 2 0 0 946 2 2497643 class 946 order 2 2497644 0 0 family 2497645 2 946 5 0 2 1551504 genus 946 Candidatus Babela 1 0 941 Candidatus Babela massiliensis species 673862 1 phylum 1 95818 167 0 no rank 1 1895827 167 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 167 species 1 2056494 0 phylum 200918 43 16080 0 43 188708 class 1 Thermotogae 16080 36 0 6 1643946 order 1 Kosmotogales 1245 5 0 1240 family 5 1643948 0 3 0 1 Kosmotoga 958 651456 3 genus Kosmotoga pacifica 543 species 1 1330330 0 412 Kosmotoga olearia 1 651457 species 0 2 0 1 282 Mesotoga 2 1184396 genus species 1184387 1 Mesotoga prima 280 0 5 0 1643947 8 order 1 Petrotogales 5103 0 5098 7 1643949 family 3 0 1254 Defluviitoga 1 1511648 2 genus 1251 Defluviitoga tunisiensis 1006576 1 species 0 0 6 genus 2 28236 1 Petrotoga 780 0 774 Petrotoga mobilis species 1 69499 0 26 1 3064 Marinitoga genus 3 160798 0 no rank 2640159 1 1437 0 species 1 1545835 1437 Marinitoga sp. 1137 1601 Marinitoga piezophila 1 149715 species 0 0 12 order 2419 28 1 Thermotogales 9696 188709 17 family 1 Thermotogaceae 3525 8 0 50 0 2335 11 genus 1911 Thermotoga 1 123 Thermotoga caldifontis species 1508419 1 0 0 species 1 93929 137 Thermotoga petrophila 0 454 Thermotoga profunda species 1508420 1 2337 1 species Thermotoga neapolitana 225 0 0 221 Thermotoga maritima 1 2336 species 568 no rank 4 2631113 0 128 Thermotoga sp. RQ2 species 1 126740 0 species 1157947 1 110 Thermotoga sp. Cell2 0 0 species 1 126738 184 Thermotoga sp. RQ7 0 species 1157948 1 Thermotoga sp. 2812B 146 133 Thermotoga naphthophila 93930 1 species 0 15 0 5 1643951 genus 1 1606 Pseudothermotoga Pseudothermotoga hypogea 136 1 57487 species 0 0 38322 1 species 532 Pseudothermotoga elfii 177758 1 species Pseudothermotoga lettingae 529 0 species 119394 1 394 Pseudothermotoga thermarum 0 family 1643950 10 6159 Fervidobacteriaceae 1 0 17 genus 4 2422 1 Fervidobacterium 1768 0 21 0 1 2424 species 723 Fervidobacterium nodosum 0 686 Fervidobacterium pennivorans 93466 1 species 0 Fervidobacterium islandicum 338 species 1 2423 37 0 Thermosipho 4374 1 5 2420 genus species 1 2421 Thermosipho africanus 1338 0 2 2676525 no rank 1947 0 0 1 1437364 species Thermosipho sp. 1070 1011 936 Thermosipho sp. 1063 1 1462747 species 0 1 46541 species 1052 Thermosipho melanesiensis 0 5493 phylum 20 57723 0 5031 Acidobacteriia 1 204432 17 class 17 0 29 0 1 Acidobacteriales 4030 12 204433 order 0 28 family 11 204434 1 4001 Acidobacteriaceae 555 Candidatus Koribacter 1 658061 2 genus 9 0 Candidatus Koribacter versatilis 546 658062 1 species 0 1198 Terriglobus 1 3 392733 genus 19 0 487 Terriglobus roseus 392734 1 species 0 692 Terriglobus saanensis 870903 1 species 0 0 11 Granulicella 1298 1 genus 940557 3 0 1 940614 species 506 Granulicella mallensis species 940615 1 781 Granulicella tundricola 0 6 0 2 33973 genus Acidobacterium 922 1 0 Acidobacterium capsulatum 916 species 1 33075 984 Solibacterales 1 order 4 332160 0 7 13 0 3 332161 family 1 977 Solibacteraceae 0 10 genus 332162 2 1 964 Candidatus Solibacter 0 954 Candidatus Solibacter usitatus species 1 332163 0 4 class 1562566 3 Blastocatellia 462 1 2 458032 genus 1 Chloracidobacterium 458 10 0 Chloracidobacterium thermophilum 448 species 1 458033 0 0 430 1 Proteobacteria 2119513 phylum 2061 1224 675651 Alphaproteobacteria 1 570 28211 class 690 0 67 204441 order 1 56236 Rhodospirillales 380 0 0 397 family 41295 31 1 Rhodospirillaceae 36371 199 0 Magnetospirillum 6693 1 13134 5 genus Magnetospirillum gryphiswaldense 1752 55518 1 species 0 0 Magnetospirillum magneticum 1528 species 84159 1 2617991 2 no rank 3214 0 1 1663591 species 1547 Magnetospirillum sp. XM-1 0 1667 Magnetospirillum sp. ME-1 1 1639348 species 0 0 222 genus 191 5 Azospirillum 9337 1 0 species 1 193 3199 Azospirillum lipoferum 0 1987 Azospirillum thiophilum species 1 528244 2957 Azospirillum brasilense 1 192 species 0 0 1226968 1 species Azospirillum humicireducens 972 0 22 genus 2 1182780 Magnetospira 1184 1 no rank 2685734 1 1162 0 0 1162 Magnetospira sp. QH-2 1288970 1 species 0 12 1 Pararhodospirillum 914 genus 1612157 2 species 1 1084 Pararhodospirillum photometricum 902 0 0 6 genus 1263978 2 1 Candidatus Endolissoclinum 6622 6616 Candidatus Endolissoclinum faulkneri 1263979 1 species 0 0 44 genus 3 168934 1 Thalassospira 3137 Thalassospira sp. CSC3H3 1570 2048283 1 species 0 species 220697 1 1523 Thalassospira xiamenensis 0 3 1081 genus Rhodospirillum 2776 1 37 0 34018 1 species Rhodospirillum centenum 1507 0 1 1085 species 1232 Rhodospirillum rubrum 0 1 Nitrospirillum 1677 genus 2 1543705 0 16 0 1661 Nitrospirillum amazonense species 28077 1 4 0 2 1543704 genus 1 1106 Niveispirillum 0 1102 Niveispirillum cyanobacteriorum species 1 1612173 36 0 1 Tistrella 1792 2 171436 genus 0 1 171437 species 1756 Tistrella mobilis 1804663 2 genus Haematospirillum 736 1 5 0 0 731 Haematospirillum jordaniae species 1 1549855 family 35 433 1 19485 Acetobacteraceae 0 197 797 Gluconacetobacter 1 2 89583 genus 6 0 791 Gluconacetobacter diazotrophicus species 33996 1 0 4 0 153497 2 genus 1 Kozakia 609 0 species 153496 1 605 Kozakia baliensis 4 0 1 Granulibacter 1311 364409 2 genus 0 Granulibacter bethesdensis 1307 1 364410 species 7 0 408 Neoasaia 1 2 320496 genus 0 320497 1 species 401 Neoasaia chiangmaiensis 1931 Acidiphilium 1 522 3 genus 46 0 Acidiphilium cryptum 885 1 524 species 0 0 species 62140 1 Acidiphilium multivorum 1000 genus 2 1602345 374 Parasaccharibacter 1 0 4 Parasaccharibacter apium 370 species 1510841 1 0 Asaia 453 1 91914 2 genus 2 0 451 Asaia bogorensis 91915 1 species 0 genus 3 441 1329 Gluconobacter 1 0 16 0 442 1 species Gluconobacter oxydans 901 Gluconobacter albidus 412 species 318683 1 0 0 39 Roseomonas 2661 1 genus 3 125216 no rank 2617492 1 1402 0 0 2018065 1 species Roseomonas sp. FDAARGOS_362 1402 257708 1 species Roseomonas gilardii 1220 0 8 434 genus 6402 Acetobacter 1 66 0 2850 Acetobacter pasteurianus species 438 1 0 499 Acetobacter oryzifermentans 1 1633874 species 0 538 1 151157 subgenus 0 0 Acetobacter aceti 538 435 1 species Acetobacter tropicalis 827 species 1 104102 0 0 species 1 1076596 574 Acetobacter persici 0 537 Acetobacter senegalensis species 1 446692 511 Acetobacter pomorum species 65959 1 0 0 55 genus 5 1434011 Komagataeibacter 3013 1 1 265960 species 904 Komagataeibacter nataicola 0 0 33995 1 species 426 Komagataeibacter europaeus 607 Komagataeibacter medellinensis species 1 1177712 0 28448 1 species 1021 Komagataeibacter xylinus 0 1239 Parvularculales 1 order 255473 4 0 5 255474 3 family 1 1234 Parvularculaceae 26 0 0 23 genus 2 208215 Parvularcula 1208 1 1185 Parvularcula bermudensis 208216 1 species 0 0 order 2 2800059 1218 1218 2800061 2 family 0 50 0 1 Maricaulis 1218 2 74317 genus Maricaulis maris 1168 species 74318 1 0 0 255 order 93 204455 74399 Rhodobacterales 1 0 1211 1 74144 Rhodobacteraceae family 92 31989 68 0 5432 Rhodobacter 1 1060 5 genus 2 196779 no rank 1996 0 species 2033869 1 983 Rhodobacter sp. CZR27 0 0 species 1850250 1 Rhodobacter sp. LPB0142 1013 1 1063 species Rhodobacter sphaeroides 2452 0 916 Rhodobacter capsulatus species 1061 1 0 5 0 1 1407 Sagittula 58842 2 genus 0 1402 no rank 1 2624628 0 1402 Sagittula sp. P11 species 1 2009329 0 2 1 Roseibacterium 1140 genus 2 159345 Roseibacterium elongatum 1138 species 1 159346 0 0 20 1 2589 Sulfitobacter genus 3 60136 0 no rank 1 196795 1452 species 1917485 1 1452 Sulfitobacter sp. AM1-D1 0 0 Sulfitobacter pseudonitzschiae 1117 1402135 1 species 1 4028 Rhodovulum genus 4 34008 0 76 1 35806 species 1858 Rhodovulum sulfidophilum 0 0 no rank 2631432 2 2094 0 Rhodovulum sp. MB263 1166 308754 1 species 928 Rhodovulum sp. P5 species 1 1564506 0 5 0 119541 2 genus 1 Rhodobaca 1031 0 Rhodobaca barguzinensis 1026 441209 1 species 2 227873 genus 1 1124 Pannonibacter 16 0 121719 1 species Pannonibacter phragmitetus 1108 0 Loktanella 4 genus 1 245186 0 8 0 299261 2 genus 1 Tateyamaria 1025 0 Tateyamaria omphalii 1017 299262 1 species genus 2 360528 Pelagibaca 1536 1 0 13 1 1250539 species Pelagibaca abyssi 1523 0 1 931 Halocynthiibacter 1579315 2 genus 4 0 0 927 Halocynthiibacter arcticus 1579316 1 species genus 5 875170 1 5159 Celeribacter 0 33 Celeribacter manganoxidans 1793 1 1411902 species 0 0 Celeribacter ethanolicus 847 1758178 1 species 0 1208324 1 species 1627 Celeribacter indicus 0 species 1397108 1 859 Celeribacter marinus 0 1488 1 1284657 genus 1284658 1 species 1488 Planktomarina temperata 0 58840 2 no rank 1422 0 0 698 Rhodobacteraceae bacterium species 1 1904441 724 Rhodobacteraceae bacterium QY30 1 2033435 species 0 genus 265 9 7910 Paracoccus 1 0 151 0 1 1945662 species Paracoccus contaminans 719 246570 1 no rank 1009 0 0 1009 Paracoccus sp. BM15 1 1529068 species 0 species 266 1 1050 Paracoccus denitrificans 1018 Paracoccus zhejiangensis species 1 1077935 0 species 34003 1 816 Paracoccus aminophilus 0 1000 Paracoccus sp. CBA4604 species 2065379 1 0 911 Paracoccus aminovorans species 34004 1 0 147645 1 species Paracoccus yeei 1236 0 34 0 1 2961 Octadecabacter 53945 4 genus 0 Octadecabacter arcticus 991 species 53946 1 0 species 1 1458307 Octadecabacter temperatus 832 0 species 1 1217908 Octadecabacter antarcticus 1104 genus 1759396 2 1 700 Marivivens 0 5 no rank 1 2622455 695 0 Marivivens sp. JLT3646 695 1920883 1 species 0 genus 2 188905 Jannaschia 956 1 0 6 no rank 2645469 1 950 0 1 290400 species Jannaschia sp. CCS1 950 0 genus 3 92944 1330 Ketogulonicigenium 1 0 16 0 Ketogulonicigenium vulgare 702 species 1 92945 1 92947 species 612 Ketogulonicigenium robustum 0 2 367771 genus 1 1668 Marinovum 9 0 0 Marinovum algicola 1659 species 42444 1 6 0 925 Thioclava 1 285107 2 genus 919 Thioclava nitratireducens 1915078 1 species 0 2 74030 genus 987 Roseovarius 1 6 0 species 1 215743 981 Roseovarius mucosus 0 97050 3 genus 1 Ruegeria 2493 26 0 921 no rank 2625375 1 0 0 Ruegeria sp. TM1040 921 1 292414 species species 89184 1 1546 Ruegeria pomeroyi 0 0 10 genus 309512 2 1 1136 Dinoroseobacter 0 1 215813 species Dinoroseobacter shibae 1126 0 3 Leisingera 1172 1 genus 191028 2 0 Leisingera methylohalidivorans 1169 species 133924 1 108 0 5 302485 genus 1 Phaeobacter 8475 0 773 Phaeobacter porticola 1 1844006 species 3475 Phaeobacter inhibens species 1 221822 0 2258 Phaeobacter gallaeciensis 60890 1 species 0 1 1580596 species 1861 Phaeobacter piscinae 0 74032 2 genus 1 1002 Antarctobacter 3 0 Antarctobacter heliothermus 999 1 74033 species 0 0 31 1 2214 Roseobacter genus 2433 3 0 Roseobacter denitrificans 1129 1 2434 species species 1 42443 1054 Roseobacter litoralis 0 Confluentimicrobium 1414 1 genus 2 1609958 0 6 no rank 2643318 1 1408 0 0 1408 Confluentimicrobium sp. EMB200-NS6 1609966 1 species 841 genus 1649279 1 0 379347 1 species Ruegeria mobilis 841 0 6 Thalassococcus genus 1 436357 0 0 genus 263377 2 2662 1 2640570 no rank 1297 0 0 1792508 1 species 1297 Yangia sp. CCB-MM3 1 1229727 species Thiobacimonas profunda 1365 0 3454 Labrenzia 1 genus 4 478070 0 107 0 Labrenzia aggregata 1139 1 187304 species 2 2648686 no rank 2208 0 0 1082 Labrenzia sp. CP4 1 1674922 species 1126 Labrenzia sp. VG12 species 1 2021862 0 genus 2 1097466 1 Defluviimonas 1218 0 14 0 species 1335048 1 Defluviimonas alba 1204 0 1093 genus 1 2211641 species 1 245188 1093 Loktanella vestfoldensis 0 Magnetococcales 795 1 1191478 2 order 3 0 0 family 1 1191479 792 0 792 1 162171 genus 0 species 1 1124597 792 Magnetococcus marinus 0 1055 order 212 356 181095 Rhizobiales 1 0 21 family 18 772 26902 Bartonellaceae 1 571 0 Bartonella 26881 1 17 773 genus 0 species 56426 1 Bartonella clarridgeiae 1736 0 6 2645622 no rank 11052 0 1935 Bartonella sp. 1-1C 1 515256 species 1822 Bartonella sp. JB15 species 1 1933906 0 Bartonella sp. WD16.2 1877 1933904 1 species 0 1933912 1 species Bartonella sp. Raccoon60 1799 0 0 1933907 1 species 1820 Bartonella sp. JB63 0 species 1933910 1 Bartonella sp. A1379B 1799 33045 1 species Bartonella grahamii 1484 0 0 species 803 1 1278 Bartonella quintana 0 species 33047 1 Bartonella vinsonii 1622 1631 Bartonella tribocorum species 1 85701 0 0 1 388640 species Bartonella australis 931 species 1686310 1 Bartonella apis 1571 0 0 774 1 species 1920 Bartonella bacilliformis 1 38323 species Bartonella henselae 1496 0 species 1 1318743 1589 Bartonella ancashensis 0 Rhizobiaceae 49382 1 55 82115 family 372 0 0 227292 10 no rank 11107 1 1813 Ensifer 106591 3 genus 16 0 0 species 1 716925 772 Ensifer sojae 0 Ensifer adhaerens 1025 1 106592 species 182 0 1 Sinorhizobium 9294 28105 7 genus 0 Sinorhizobium medicae 895 species 110321 1 2713 species group 1 663276 0 species 1 380 Sinorhizobium fredii 2713 0 0 species 382 1 Sinorhizobium meliloti 2517 2016 2 2613772 no rank 0 species 1 794846 Sinorhizobium sp. CCBAU 05631 988 0 Sinorhizobium sp. RAC02 1028 1842534 1 species 0 0 1 194963 species 971 Sinorhizobium americanum no rank 36 227290 29804 0 115 0 1 7775 Agrobacterium 7 357 genus 0 species 359 1 Agrobacterium rhizogenes 604 2 2632611 no rank 1783 0 0 632 Agrobacterium sp. H13-3 861208 1 species 0 1842536 1 species Agrobacterium sp. RAC06 1151 0 1 373 species 734 Agrobacterium vitis species group 1183400 2 4539 0 species 1 1176649 681 Agrobacterium fabrum 0 0 1 358 species 3858 Agrobacterium tumefaciens 1 Rhizobium 20528 genus 379 27 0 1248 0 species 1 398 671 Rhizobium tropici 0 8230 no rank 21 2613769 Rhizobium sp. 10195 720 2028343 1 species 0 Rhizobium sp. Kim5 548 2020311 1 species 0 1703961 1 species Rhizobium sp. N1314 153 0 1703966 1 species Rhizobium sp. N731 153 0 1703968 1 species Rhizobium sp. N871 10 0 0 1703962 1 species Rhizobium sp. N1341 18 Rhizobium sp. N113 21 species 1 1703960 0 0 Rhizobium sp. IRBG74 634 1 424182 species 13 Rhizobium sp. N741 species 1 1703967 0 1914541 1 species Rhizobium sp. Y9 543 0 0 636 Rhizobium sp. CIAT894 1 2020312 species 698 Rhizobium sp. N324 1703969 1 species 0 0 1703965 1 species Rhizobium sp. N6212 1 704 Rhizobium sp. NT-26 species 1125847 1 0 757 Rhizobium sp. NXC24 species 1 2048897 0 0 1571470 1 species 731 Rhizobium sp. ACO-34A 0 species 1869170 1 Rhizobium sp. S41 550 0 Rhizobium sp. N621 1 1 1703964 species Rhizobium sp. TAL182 238 species 2020313 1 0 0 516 Rhizobium sp. NXC14 1981173 1 species species 1301032 1 585 Rhizobium sp. IE4771 0 0 Rhizobium leguminosarum 4681 species 384 1 1 29449 species 2486 Rhizobium etli 0 396 1 species Rhizobium phaseoli 2066 0 56730 1 species Rhizobium gallicum 1146 0 0 9 genus 2 1525371 Neorhizobium 1501 1 1492 Neorhizobium galegae species 399 1 0 2 323620 genus 1 Shinella 1395 10 0 0 1385 no rank 1 2643062 0 1385 Shinella sp. HZN7 1 879274 species 34019 6 genus 1 6704 Liberibacter 89 0 1088 Candidatus Liberibacter asiaticus 34021 1 species 0 0 species 1 309868 1467 Candidatus Liberibacter americanus 0 1 556287 species Candidatus Liberibacter solanacearum 1149 0 species 1273132 1 Liberibacter crescens 1681 species 1 34020 1230 Candidatus Liberibacter africanus 0 22 0 1 3384 Xanthobacteraceae 7 335928 family 32 0 1167 Starkeya 1 2 152053 genus 921 1 species Starkeya novella 1135 0 27 0 1262 Xanthobacter 1 2 279 genus Xanthobacter autotrophicus 1235 species 1 280 0 0 16 1 Azorhizobium 933 genus 2 6 0 7 1 species 917 Azorhizobium caulinodans 119042 6 no rank 3319 0 1734920 2 genus 1 Pseudorhodoplanes 987 35 0 1235591 1 species Pseudorhodoplanes sinuspersici 952 0 24 0 1 Hartmannibacter 1475 1572860 2 genus 0 species 1 1482074 Hartmannibacter diazotrophicus 1451 2 1484898 genus Methyloceanibacter 857 1 27 0 0 Methyloceanibacter caenitepidi 830 1 1384459 species 0 12 1 1239 Rhodobiaceae family 3 119043 genus 2 256616 1227 Parvibaculum 1 0 32 Parvibaculum lavamentivorans 1195 1 256618 species 0 0 17 family 255475 7 Aurantimonadaceae 3978 1 2 414371 genus Aureimonas 994 1 35 0 0 no rank 2615206 1 959 0 species 1 1349819 959 Aureimonas sp. AU20 71 0 293088 4 genus 1 2967 Martelella 0 987 no rank 2629616 1 987 Martelella sp. AD-3 species 1 686597 0 1132 Martelella mediterranea species 293089 1 0 species 1 1486262 Martelella endophytica 777 0 1933 Beijerinckiaceae 1 45404 5 family 8 0 genus 120652 2 1 Methylocella 804 0 17 0 787 Methylocella silvestris species 1 199596 1 1121 Beijerinckia 532 2 genus 14 0 533 1 species 1107 Beijerinckia indica 0 62 0 16031 Phyllobacteriaceae 1 69277 20 family 19 0 897 Phyllobacterium 1 28100 2 genus 0 Phyllobacterium zundukense 878 species 1 1867719 449972 2 genus 1 Chelativorans 741 27 0 714 no rank 2643807 1 0 Chelativorans sp. BNC1 714 species 1 266779 0 22 0 Aminobacter 1208 1 2 31988 genus 0 species 1 83263 Aminobacter aminovorans 1186 891 Nitratireductor 1 2 245876 genus 26 0 0 472175 1 species Nitratireductor basaltis 865 25 0 274591 2 genus 1269 Hoeflea 1 0 no rank 2614931 1 1244 species 1620421 1 1244 Hoeflea sp. IMCC20628 0 genus 9 68287 Mesorhizobium 10963 1 0 343 0 species 1 2066070 Mesorhizobium japonicum 1215 0 1473 no rank 325217 1 0 1473 Mesorhizobium sp. WSM1497 species 1 278153 0 species 1670800 1 Mesorhizobium sp. B7 1353 0 species 1 381 Mesorhizobium loti 1234 0 Mesorhizobium amorphae 1264 1 71433 species Mesorhizobium australicum 1152 species 1 536018 0 0 1 39645 species 1714 Mesorhizobium ciceri 593909 1 species Mesorhizobium opportunistum 1215 0 264 0 41294 26 family 1 Bradyrhizobiaceae 30731 155 0 4739 Bosea 1 85413 5 genus 0 2653178 3 no rank 3314 1792307 1 species 919 Bosea sp. PAMC 26642 0 0 1257 Bosea sp. RAC05 1842539 1 species 1138 Bosea sp. AS-1 1 2015316 species 0 1 1526658 species Bosea vaviloviae 1270 0 genus 40136 2 1 Oligotropha 737 0 10 0 40137 1 species Oligotropha carboxidovorans 727 20 0 3 911 genus 1 1470 Nitrobacter 931 Nitrobacter hamburgensis species 1 912 0 0 Nitrobacter winogradskyi 519 species 913 1 0 52 genus 1073 2 7072 Rhodopseudomonas 1 0 Rhodopseudomonas palustris 7020 1076 1 species genus 374 11 1 15558 Bradyrhizobium 0 431 0 no rank 2631580 6 8189 1357 Bradyrhizobium sp. SK17 species 1 2057741 0 0 Bradyrhizobium sp. 1421 species 376 1 0 1323 Bradyrhizobium sp. BTAi1 species 1 288000 0 1135 Bradyrhizobium sp. CCGE-LA001 1223566 1 species 0 species 1 114615 Bradyrhizobium sp. ORS 278 1666 0 1287 Bradyrhizobium sp. ORS 285 species 1 115808 0 species 1355477 1 Bradyrhizobium diazoefficiens 2243 0 species 1274631 1 1239 Bradyrhizobium icense 1 44255 species Bradyrhizobium oligotrophicum 1400 0 Bradyrhizobium japonicum 2056 1 375 species 0 8 0 1649510 2 genus Variibacter 891 1 883 Variibacter gotjawalensis 1333996 1 species 0 12 0 2658 Methylocystaceae 1 31993 6 family 40 0 133 3 genus 1 Methylocystis 1559 0 707 no rank 2625913 1 0 1 187303 species Methylocystis sp. SC2 707 812 Methylocystis bryophila 1 655015 species 0 14 0 1087 Methylosinus 1 2 425 genus 1073 Methylosinus trichosporium 426 1 species 0 20 118882 family 1 7287 Brucellaceae 21 0 876 0 1 2941 Brucella 14 234 genus 0 111 Brucella canis 1 36855 species 0 190 Brucella vulpis 1 981386 species 0 Brucella pinnipedialis 120 120576 1 species 2632610 4 no rank 785 0 species 1885919 1 232 Brucella sp. 141012304 0 Brucella sp. 09RB8471 237 species 1149952 1 0 species 1891098 1 63 Brucella sp. 2002734562 0 species 1844051 1 Brucella sp. 09RB8910 253 0 29459 1 species 101 Brucella melitensis 0 110 Brucella abortus 1 235 species 0 0 72 Brucella microti 1 444163 species species 236 1 31 Brucella ovis 0 29461 1 species Brucella suis 433 0 112 Brucella ceti species 120577 1 0 Ochrobactrum 4325 1 528 5 genus 85 0 species 571256 1 Ochrobactrum pituitosum 1679 0 661 Ochrobactrum anthropi 1 529 species 0 0 722 Ochrobactrum sp. A44 271865 1 species 0 Ochrobactrum pseudogrignonense 1178 1 419475 species 0 11 family 4 2036754 2716 Chelatococcaceae 1 1 Chelatococcus 2705 genus 28209 3 0 81 species 1 444444 1191 Chelatococcus daeguensis 0 0 1 2638111 no rank 1433 0 1433 Chelatococcus sp. CO-6 1 1702325 species 19 45401 family 12471 Hyphomicrobiaceae 1 83 0 18 0 Rhodomicrobium 671 1 2 1068 genus species 1069 1 653 Rhodomicrobium vannielii 0 59282 2 genus 1055 Blastochloris 1 20 0 species 1079 1 Blastochloris viridis 1035 0 1082930 2 genus 1 721 Pelagibacterium 18 0 0 species 531813 1 703 Pelagibacterium halotolerans 0 87 genus 81 4 1 4776 Hyphomicrobium 0 926 Hyphomicrobium denitrificans species 1 53399 no rank 1 2619925 3102 0 1 717785 species 3102 Hyphomicrobium sp. MC1 0 Hyphomicrobium nitrativorans 661 1427356 1 species 0 3 0 119044 2 genus 1 720 Filomicrobium 0 1 1608628 species Candidatus Filomicrobium marinum 717 genus 2 29407 Rhodoplanes 1365 1 0 31 1334 1 2619116 no rank 0 0 1 674703 species Rhodoplanes sp. Z2-YC6860 1334 73 0 4 46913 genus 1 Devosia 3080 3007 no rank 196773 3 0 1 1643450 species 962 Devosia sp. H5989 0 0 766 Devosia sp. I507 species 1 2083786 species 1 1736675 Devosia sp. A16 1279 0 family 15 119045 Methylobacteriaceae 18009 1 0 66 0 6811 genus 2282523 3 0 4229 Methylobacterium extorquens species 1 408 0 species 1 29429 Methylobacterium zatmanii 824 0 species 1 223967 1758 Methylobacterium populi 0 397 1 10051 Methylobacterium genus 9 407 1497 Methylobacterium aquaticum species 270351 1 0 418223 1 species Methylobacterium phyllosphaerae 986 0 0 Methylobacterium nodulans 1455 114616 1 species 0 Methylobacterium oryzae 990 1 334852 species 3582 2615210 3 no rank 0 1686 Methylobacterium sp. 4-46 species 1 426117 0 0 862 Methylobacterium sp. AMS5 1 925818 species species 1 1479019 Methylobacterium sp. C1 1034 0 1144 Methylobacterium radiotolerans species 31998 1 0 1081 Microvirga 1 genus 186650 2 0 26 0 1882682 1 species 1055 Microvirga ossetica 55 766 order Rickettsiales 42938 1 57 0 0 1 family 1328881 3 1170 Candidatus Midichloriaceae 1 14 0 2 411566 genus 1169 Candidatus Midichloria 1 1155 Candidatus Midichloria mitochondrii 1 234827 species 0 Anaplasmataceae 21627 1 family 23 942 0 54 0 9688 tribe 8 952 953 8 genus 1 9688 Wolbachia 214 0 0 7 2640676 no rank 9474 0 species 1 77038 2375 Wolbachia endosymbiont of Drosophila simulans 0 species 77551 1 Wolbachia endosymbiont of Onchocerca volvulus 1025 species 80849 1 1780 Wolbachia endosymbiont of Brugia malayi 0 Wolbachia endosymbiont of Cimex lectularius 977 246273 1 species 0 1 100901 species 1079 Wolbachia endosymbiont of Onchocerca ochengi 0 Wolbachia endosymbiont of Drosophila melanogaster 1084 species 163164 1 0 0 Wolbachia sp. wRi 1154 species 66084 1 0 22 genus 33993 4 1 1653 Neorickettsia 0 Neorickettsia sennetsu 543 951 1 species species 33994 1 Neorickettsia helminthoeca 516 0 0 species 1 950 Neorickettsia risticii 572 21 0 768 4 genus 1 Anaplasma 1052 0 1 770 species Anaplasma marginale 276 0 275 Anaplasma centrale 1 769 species 480 species group 1 106179 0 0 species 1 948 480 Anaplasma phagocytophilum 943 6 genus 1 9180 Ehrlichia 63 0 106178 4 species group 7421 0 2139 Ehrlichia ruminantium 779 1 species 0 0 945 1 species 1637 Ehrlichia chaffeensis 1975 Ehrlichia canis 1 944 species 0 0 species 1 35795 1670 Ehrlichia muris 0 no rank 1 106181 1696 0 Ehrlichia sp. HF 1696 species 1 391036 0 28 Rickettsiaceae 17156 1 family 27 775 24 33988 tribe 15952 0 Rickettsia 13318 1 genus 780 23 0 1220 species group 114277 17 5050 0 species 47589 1 Rickettsia peacockii 500 0 64 Rickettsia slovaca 35794 1 species 0 Rickettsia conorii 102 species 781 1 0 0 Rickettsia amblyommatis 259 species 33989 1 0 species 1 786 612 Rickettsia akari 0 35792 1 species 87 Rickettsia parkeri 0 226665 1 species Rickettsia heilongjiangensis 139 148 Rickettsia massiliae species 35791 1 0 Rickettsia africae 85 species 35788 1 0 863 Rickettsia australis species 1 787 0 0 103 Rickettsia philipii species 1105106 1 177 Rickettsia rickettsii 1 783 species 0 1 35790 species 115 Rickettsia japonica 0 species 1 33992 Rickettsia rhipicephali 226 0 0 1 42862 species 814 Rickettsia felis 0 1 109232 species Rickettsia monacensis 612 144 Rickettsia montanensis 33991 1 species 0 0 species group 1129742 2 2700 Rickettsia bellii 1613 species 1 33990 0 0 species 788 1 Rickettsia canadensis 1087 0 no rank 1 114295 1410 1410 Rickettsia endosymbiont of Bemisia tabaci 337479 1 species 0 species group 114292 2 2938 0 0 Rickettsia typhi 1515 species 1 785 1423 Rickettsia prowazekii 782 1 species 0 2634 1 69474 genus 0 Orientia tsutsugamushi 2634 species 1 784 0 1 0 2115980 2 genus Candidatus Phycorickettsia 1176 1 0 1175 Candidatus Phycorickettsia trachydisci 2115978 1 species 0 no rank 1699067 1 2928 Rickettsiales bacterium Ac37b 2928 1528098 1 species 0 2800060 6 order 3775 0 family 69657 6 3775 Hyphomonadaceae 1 0 56 genus 3 85 1 Hyphomonas 1741 0 43 Hyphomonas neptunium 765 species 1 81032 0 933 no rank 2630699 1 0 species 1 1906738 Hyphomonas sp. Mor2 933 0 0 21 genus 2 2723 Hirschia 1978 1 0 species 1 2724 Hirschia baltica 1957 order 54526 9 Pelagibacterales 228758 1 0 44 212689 Pelagibacteraceae 1 6 1655514 family 92 0 0 1655516 2 no rank 117289 0 alpha proteobacterium HIMB5 105304 1 859653 species 0 744985 1 species 11985 alpha proteobacterium HIMB59 1 95308 Candidatus Pelagibacter 3 198251 genus 32 0 0 80312 Candidatus Pelagibacter ubique species 198252 1 no rank 1 2647897 14964 0 1 1002672 species 14964 Candidatus Pelagibacter sp. IMCC9063 0 2045213 2 genus Candidatus Fonsibacter 16025 1 36 0 0 1925548 1 species Candidatus Fonsibacter ubiquis 15989 0 62 1 Caulobacterales 12528 order 204458 20 family 19 76892 1 Caulobacteraceae 12466 0 212 genus 20 2 1242 Phenylobacterium 1 0 22 0 Phenylobacterium zucineum 1220 284016 1 species 76890 2 genus 593 Asticcacaulis 1 17 0 species 1 78587 576 Asticcacaulis excentricus 0 0 117 1 4296 Brevundimonas genus 41275 7 0 Brevundimonas vesicularis 529 1 41276 species 631 Brevundimonas naejangsanensis 588932 1 species 0 0 species 1 74313 Brevundimonas subvibrioides 872 3 2622653 no rank 2147 0 0 1938605 1 species Brevundimonas sp. LM2 911 556 Brevundimonas sp. GW460-12-10-14-LB2 1 1827469 species 0 680 Brevundimonas sp. DS20 species 1532555 1 0 130 0 75 6 genus Caulobacter 5492 1 Caulobacter henricii 848 species 69395 1 0 0 species 155892 1 1714 Caulobacter vibrioides 0 1 69666 species Caulobacter mirabilis 979 0 88688 1 species 888 Caulobacter segnis no rank 1 2648921 933 0 0 species 366602 1 Caulobacter sp. K31 933 0 no rank 81440 1 631 0 631 Caulobacteraceae bacterium OTSz_A_272 species 1759059 1 0 11 order 1921002 9 1 4309 Holosporales family 3 2100208 Caedimonadaceae 1752 1 0 12 genus 2 1509243 Candidatus Nucleicultrix 1740 1 0 12 0 1728 Candidatus Nucleicultrix amoebiphila 1 1509244 species 0 12 1217 Candidatus Paracaedibacteraceae 1 family 3 1777752 genus 2 1521255 Candidatus Paracaedibacter 1205 1 0 17 0 1 91604 species 1188 Candidatus Paracaedibacter acanthamoebae 1329 Holosporaceae 1 2 44746 family 1 0 1328 no rank 1 204454 0 0 86106 1 species 1328 endosymbiont of Acanthamoeba sp. UWC8 order 82 204457 1 Sphingomonadales 58098 0 258 437 0 46025 Sphingomonadaceae 1 59 41297 family 0 17 genus 2 150203 1 Blastomonas 939 0 922 no rank 1 2626550 0 1 1842535 species 922 Blastomonas sp. RAC04 2685927 1 genus 857 0 0 857 Sphingomonas sp. JJ-A5 species 1 1921510 Citromicrobium 692 1 2 72173 genus 16 0 676 1 2630544 no rank 0 Citromicrobium sp. JL477 676 1 1634516 species 0 2 1649486 genus 1 Rhizorhabdus 938 13 0 1850238 1 species Rhizorhabdus dicambivorans 925 0 0 280 genus 15 13687 1 17582 Sphingomonas 1549858 1 species 823 Sphingomonas taxi 0 1307 0 2 160791 species 1 Sphingomonas wittichii 2578 0 1283312 1 strain 1271 Sphingomonas sp. DC-6 species 1 397260 1281 Sphingomonas sanxanigenens 0 species 1 152682 719 Sphingomonas melonis 0 0 1609977 1 species 916 Sphingomonas hengshuiensis species 93064 1 759 Sphingomonas koreensis 0 0 no rank 196159 6 9411 0 Sphingomonas sp. MM-1 829 745310 1 species Sphingomonas sp. LM7 684 1938607 1 species 0 5854 Sphingomonas sp. LK11 1390395 1 species 0 696 Sphingomonas sp. Cra20 1 1327635 species 0 656 Sphingomonas sp. NIC1 1 1961362 species 0 0 Sphingomonas sp. KC8 692 1 1030157 species 0 815 Sphingomonas panacis species 1 1560345 0 89 Novosphingobium 3425 1 genus 165696 5 691 Novosphingobium aromaticivorans 48935 1 species 0 0 no rank 2644732 1 837 species 702113 1 837 Novosphingobium sp. PP1Y 0 1002 Novosphingobium resinovorum 158500 1 species 0 205844 1 species Novosphingobium pentaromativorans 806 0 1 Zymomonas 1528 genus 541 2 0 8 1 542 species Zymomonas mobilis 1520 0 genus 1 2709685 812 0 0 Sphingorhabdus flavimaris 812 species 266812 1 genus 165697 10 7884 Sphingopyxis 1 0 188 1 33050 species Sphingopyxis macrogoltabida 1358 0 species 267128 1 Sphingopyxis granuli 769 0 0 species 1 33052 Sphingopyxis terrae 745 species 1 117207 647 Sphingopyxis alaskensis 0 Sphingopyxis fribergensis 660 1 1515612 species 0 0 3517 4 2614943 no rank Sphingopyxis sp. LPB0140 1137 species 1 1913578 0 0 Sphingopyxis sp. QXT-31 943 species 1357916 1 1 1866325 species 803 Sphingopyxis sp. MG 0 0 634 Sphingopyxis sp. 113P3 species 1 292913 Sphingobium 9271 1 genus 165695 15 0 301 Sphingobium chlorophenolicum 647 species 46429 1 0 species 1 1332080 493 Sphingobium baderi 0 0 1 76947 species Sphingobium herbicidovorans 501 0 no rank 6 2611147 3795 0 1843368 1 species Sphingobium sp. RAC03 577 species 1855519 1 Sphingobium sp. EP60837 485 0 0 1 484429 species 724 Sphingobium sp. YBL2 0 1 1315974 species Sphingobium sp. TKS 738 0 species 627192 1 Sphingobium sp. SYK-6 751 520 Sphingobium sp. MI1205 species 407020 1 0 0 120107 1 species Sphingobium cloacae 544 Sphingobium japonicum 711 1 332056 species 0 0 species 1 1673076 544 Sphingobium hydrophobicum 1 13690 species Sphingobium yanoikuyae 1093 0 Sphingobium indicum 642 332055 1 species 0 1 Sphingorhabdus 1660 genus 1434046 3 0 47 1613 no rank 2614947 2 0 1 2077182 species Sphingorhabdus sp. YGSMI21 858 0 755 Sphingorhabdus sp. M41 species 1806885 1 0 172 0 335929 22 family Erythrobacteraceae 11815 1 genus 2800685 1 480 0 1 543877 species Altererythrobacter marensis 480 0 no rank 2800788 6 3487 0 genus 3 1041 Erythrobacter 2086 1 0 180 Porphyrobacter neustonensis 599 1112 1 species 0 1 39960 species 1307 Erythrobacter litoralis 0 3 1111 genus Porphyrobacter 1401 1 65 0 0 2683265 2 no rank 1336 660 Porphyrobacter HT-58-2 species 2023229 1 0 species 1 1896196 Porphyrobacter sp. LM 6 676 0 0 761 genus 1 2800682 0 species 1 645517 761 Altererythrobacter namhicola 0 2074 genus 2 2800681 Erythrobacter atlanticus 1053 species 1 1648404 0 species 1 502682 Erythrobacter gangjinensis 1021 0 921 2800686 2 genus 0 427 Altererythrobacter mangrovi species 1 1982042 0 0 species 1 692370 Altererythrobacter dongtanensis 494 genus 3 1295327 1 Croceicoccus 1301 0 50 species 1348774 1 Croceicoccus naphthovorans 522 0 0 729 Croceicoccus marinus species 1 450378 0 175 1 1715 Altererythrobacter genus 361177 4 0 Altererythrobacter atlanticus 510 species 1 1267766 0 species 361183 1 Altererythrobacter epoxidivorans 498 1 476157 species Altererythrobacter ishigakiensis 532 0 0 genus 2 1855416 904 0 Erythrobacter flavus 510 1 192812 species 0 species 1 266951 Erythrobacter seohaensis 394 0 82117 8 no rank 9573 Polymorphum 1478 1 genus 2 991903 0 69 0 species 1 991904 1409 Polymorphum gilvum 0 26 genus 2 1632780 1 1258 Phreatobacter 1232 Phreatobacter sp. S-12 species 1868589 1 0 genus 213485 2 Micavibrio 1118 1 0 10 0 349221 1 species Micavibrio aeruginosavorus 1108 0 5719 clade 2 62654 5719 Candidatus Puniceispirillum 1 2 767891 genus 38 0 Candidatus Puniceispirillum marinum 5681 767892 1 species 0 class 354 28216 Betaproteobacteria 316006 1 0 301 0 1879 1 262768 Burkholderiales order 80840 236 0 150 1 Oxalobacteraceae 21249 family 75682 29 50 0 1 3176 Collimonas 4 202907 genus 0 Collimonas pratensis 891 species 1 279113 species 1 279058 Collimonas arenae 1316 0 0 species 158899 1 Collimonas fungivorans 919 29580 7 genus 4953 Janthinobacterium 1 66 0 0 3037 2610881 4 no rank Janthinobacterium sp. LM6 861 1938606 1 species 0 Janthinobacterium sp. Marseille 451 species 375286 1 0 species 1 1644131 Janthinobacterium sp. 1_2014MBL_MicDiv 1037 0 species 1 1236179 Janthinobacterium sp. B9-8 688 0 0 1065 Janthinobacterium svalbardensis species 1 368607 0 Janthinobacterium agaricidamnosum 785 species 55508 1 83 0 1 5232 Massilia 149698 6 genus 1021 Massilia sp. ZMN-3 1 2072590 species 0 2045208 1 species 1022 Massilia sp. B2 0 0 1068 Massilia putida 1141883 1 species no rank 2 2609279 2038 0 Massilia sp. WG5 1143 species 1707785 1 0 0 895 Massilia sp. NR 4-1 species 1 1678028 6 0 Herminiimonas 958 1 3 303379 genus 1809410 1 species 444 Herminiimonas arsenitoxidans 0 0 Herminiimonas arsenicoxydans 508 204773 1 species 1 Herbaspirillum 6386 963 6 genus 58 0 727 no rank 2624150 1 0 0 Herbaspirillum sp. meg3 727 species 1 2025949 964 1 species 1586 Herbaspirillum seropedicae 0 species 92645 1 849 Herbaspirillum frisingense 0 1 341045 species Herbaspirillum hiltneri 2349 0 0 817 Herbaspirillum rubrisubalbicans 80842 1 species genus 2 846 1 Oxalobacter 394 0 1 847 1 species Oxalobacter formigenes 393 0 Comamonadaceae 47824 1 59 80864 family 332 0 0 3 genus 3 665874 Limnohabitans 844 1 2626134 2 no rank 841 0 0 Limnohabitans sp. 103DPR2 357 species 1 1678129 0 484 Limnohabitans sp. 63ED37-2 species 1678128 1 0 2 Diaphorobacter 684 1 genus 238749 2 0 Diaphorobacter polyhydroxybutyrativorans 682 species 1 1546149 12 0 Rhodoferax 2841 1 28065 5 genus species 1842727 1 1076 Rhodoferax koreense 0 0 Rhodoferax antarcticus 716 1 81479 species 0 Rhodoferax saidenbachensis 475 1484693 1 species 562 Rhodoferax ferrireducens 1 192843 species 0 1 2678886 genus 639 0 species 1 2116657 639 Melaminivora sp. SC2-7 0 genus 4 47420 Hydrogenophaga 2465 1 0 12 0 no rank 2610897 2 1708 0 Hydrogenophaga sp. PBC 892 species 1 795665 0 Hydrogenophaga sp. RAC07 816 species 1842537 1 0 species 1763535 1 Hydrogenophaga crassostreae 745 2 0 364316 2 genus Verminephrobacter 1799 1 0 species 364317 1 Verminephrobacter eiseniae 1797 0 12 1 1207 Ottowia genus 219181 3 0 species 2109914 1 688 Ottowia sp. KADR8-3 no rank 2645081 1 507 0 0 species 1658672 1 Ottowia sp. oral taxon 894 507 4361 Comamonas 1 4 283 genus 18 0 0 285 1 species 1295 Comamonas testosteroni 1831 Comamonas serinivorans 1 1082851 species 0 0 species 1 225992 1217 Comamonas kerstersii 2 1436289 genus 1 Candidatus Symbiobacter 687 6 0 0 1436290 1 species Candidatus Symbiobacter mobilis 681 1 Variovorax 10458 5 34072 genus 125 0 0 1 34073 species 6402 Variovorax paradoxus 2697 2 663243 no rank 0 0 1 2126319 species 1432 Variovorax sp. PMC12 0 species 1 1795631 Variovorax sp. PAMC 28711 1265 0 species 1 436515 Variovorax boronicumulans 1234 1 Alicycliphilus 897 genus 2 201096 0 6 0 1 179636 species Alicycliphilus denitrificans 891 1 Acidovorax 5995 9 12916 genus 171 0 Acidovorax sp. NA3 503 553814 1 species 0 0 Acidovorax ebreus 578 species 1 721785 1161 Acidovorax avenae 1 80867 species 0 Acidovorax citrulli 808 species 80869 1 0 0 4 2684926 no rank 2774 0 species 1 232721 581 Acidovorax sp. JS42 Acidovorax sp. RAC01 609 1842533 1 species 0 Acidovorax sp. T1 958 species 1858609 1 0 0 1 358220 species Acidovorax sp. KKS102 626 5 80865 genus 1 5123 Delftia 112 0 0 2709 2613839 2 no rank 1580 Delftia sp. Cs1-4 742013 1 species 0 0 1129 Delftia sp. HK171 1920191 1 species 0 1220 Delftia tsuruhatensis 1 180282 species 1 80866 species 1082 Delftia acidovorans 0 8 0 52972 3 genus Polaromonas 5403 1 0 species 1 216465 Polaromonas naphthalenivorans 1490 0 3905 2638319 1 no rank 0 Polaromonas sp. JS666 3905 1 296591 species 0 2 2490452 genus 1175 0 591 Comamonadaceae bacterium A1 1 1458425 species 584 Comamonadaceae bacterium B1 1 1458426 species 0 Simplicispira 537 1 genus 352450 2 0 5 0 species 2109915 1 Simplicispira sp. SC1-8 532 0 10 genus 1649468 2 1 672 Melaminivora 662 no rank 2641902 1 0 2109913 1 species Melaminivora sp. SC2-9 662 0 0 19 1 Ramlibacter 1705 genus 174951 2 1686 Ramlibacter tataouinensis species 1 94132 0 224471 17 no rank 11721 0 1 937 Methylibium 316612 2 genus 33 0 0 904 Methylibium petroleiphilum species 1 105560 0 15 genus 93681 2 1 Roseateles 1819 species 1 76731 1804 Roseateles depolymerans 0 12 0 2 32012 genus 997 Thiomonas 1 0 species 926 1 Thiomonas intermedia 985 1198 Paucibacter 1 2 318147 genus 7 0 no rank 2642959 1 1191 0 0 Paucibacter sp. KCTC 42545 1191 1768242 1 species 29 0 Leptothrix 1072 1 2 88 genus 34029 1 species 1043 Leptothrix cholodnii 0 1740 [Polyangium] brachysporum 1 413882 species 0 genus 2 65047 1 1473 Mitsuaria 0 20 2648776 1 no rank 1453 0 Mitsuaria sp. 7 1453 1 1658665 species 0 25 0 Rubrivivax 1346 1 2 28067 genus 0 Rubrivivax gelatinosus 1321 species 1 28068 0 24 genus 212743 2 1139 Rhizobacter 1 Rhizobacter gummiphilus 1115 1 946333 species 0 504 0 84 119060 family 1 145927 Burkholderiaceae 225 0 16654 Paraburkholderia 1 1822464 12 genus 0 1292 no rank 1 2615204 0 1926494 1 species Paraburkholderia sp. SOS3 1292 species 1 2026199 1332 Paraburkholderia aromaticivorans 0 0 Paraburkholderia sprentiae 1021 species 948107 1 311230 1 species Paraburkholderia terrae 1107 0 0 1355 Paraburkholderia xenovorans species 36873 1 0 Paraburkholderia phenoliruptrix 1109 1 252970 species 0 Paraburkholderia hospita 1312 1 169430 species 0 1 148447 species 1459 Paraburkholderia phymatum 1 75105 species 2398 Paraburkholderia caribensis 0 261302 1 species 2954 Paraburkholderia phytofirmans 0 Paraburkholderia fungorum 1090 species 1 134537 0 0 1224 genus 1827195 1 Burkholderia sp. RPE64 1224 species 758793 1 0 22 0 Polynucleobacter 2151 1 44013 4 genus 1 1835254 species Polynucleobacter duraquae 658 0 533 Polynucleobacter necessarius 1 576610 species 0 Polynucleobacter asymbioticus 938 species 1 576611 0 genus 41 32008 1 Burkholderia 85177 0 2263 0 11 2613784 no rank 10906 0 Burkholderia sp. PAMC 26561 580 1795043 1 species 805 Burkholderia sp. Bp7605 species 1 1740163 0 Burkholderia sp. 2002721687 884 1 1468409 species 0 416344 1 species Burkholderia sp. KJ006 934 0 0 Burkholderia sp. PAMC 28687 545 species 1 1795874 Burkholderia sp. HB1 1187 species 1678678 1 0 905 Burkholderia sp. Bp5365 1740162 1 species 0 species 1 640510 Burkholderia sp. CCGE1001 1099 0 Burkholderia sp. CCGE1003 1179 1 640512 species 0 Burkholderia sp. RPE67 1528 species 758796 1 0 0 1 1097668 species Burkholderia sp. YI23 1260 species 41899 1 Burkholderia plantarii 1382 0 87882 19 species group 35073 0 2185 Burkholderia multivorans 87883 1 species 0 1458 Burkholderia ambifaria species 152480 1 0 0 Burkholderia cenocepacia 4621 species 1 95486 0 292 1 species Burkholderia cepacia 5537 Burkholderia contaminans 1459 species 1 488447 0 0 Burkholderia pseudomultivorans 898 species 1 1207504 801 Burkholderia diffusa species 488732 1 0 1 1503054 species 1089 Burkholderia stagnalis 0 0 1715 Burkholderia latens species 488446 1 0 766 Burkholderia territorii species 1 1503055 0 [Pseudomonas] mesoacidophila 925 species 265293 1 0 2221 Burkholderia vietnamiensis 1 60552 species Burkholderia seminalis 1065 488731 1 species 0 Burkholderia pyrrocinia 742 species 60550 1 0 0 species 1 101571 Burkholderia ubonensis 3312 0 850 Burkholderia dolosa 1 152500 species 0 1 95485 species Burkholderia stabilis 1667 species 482957 1 2922 Burkholderia lata 0 species 488729 1 840 Burkholderia metallica 0 0 30487 111527 7 species group 0 2794 Burkholderia mallei 1 13373 species 0 17787 Burkholderia pseudomallei 28450 1 species 0 1 342113 species Burkholderia oklahomensis 1744 species 1637837 1 Burkholderia sp. MSMB0266 1524 0 0 1637831 1 species 1627 Burkholderia sp. MSMB617WGS 2093 Burkholderia sp. MSMB0852 species 1 1637841 0 2918 Burkholderia thailandensis 1 57975 species 0 0 28095 1 species 2225 Burkholderia gladioli 0 species 1 337 Burkholderia glumae 2841 143 0 13456 Pandoraea 1 93217 10 genus 1 93221 species Pandoraea pulmonicola 4847 0 0 Pandoraea sputorum 614 species 93222 1 0 Pandoraea vervacti 784 656178 1 species species 93220 1 Pandoraea pnomenusa 1466 0 660 Pandoraea thiooxydans species 1 445709 0 Pandoraea faecigallinarum 961 1 656179 species 0 0 93219 1 species 1493 Pandoraea norimbergensis 0 1656 Pandoraea oxalativorans species 573737 1 0 93218 1 species Pandoraea apista 832 17487 Cupriavidus 1 genus 106589 9 0 277 0 1 119219 species 4403 Cupriavidus metallidurans 0 species 82541 1 Cupriavidus gilardii 1181 0 species 1 106590 Cupriavidus necator 1532 0 Cupriavidus pinatubonensis 908 species 248026 1 Cupriavidus sp. USMAA1020 1960 367825 1 species 0 0 2 2640874 no rank 4468 species 876364 1 2466 Cupriavidus sp. USMAA2-4 0 0 Cupriavidus sp. USMAHM13 2002 species 1 1389192 1 68895 species 2758 Cupriavidus basilensis 0 0 genus 2571159 1 594 Paraburkholderia rhizoxinica 594 412963 1 species 0 genus 48736 5 1 Ralstonia 8680 0 112 0 Ralstonia solanacearum 4675 species 1 305 1281 Ralstonia mannitolilytica 105219 1 species 0 0 species 190721 1 942 Ralstonia insidiosa 1670 Ralstonia pickettii 329 1 species 0 0 2 80841 no rank 975 0 Burkholderiales bacterium YL45 473 species 1 1834205 Burkholderiales bacterium GJ-E10 502 1469502 1 species 0 175 0 33193 Alcaligenaceae 1 506 44 family 0 7 genus 1921582 2 Orrella 760 1 1851544 1 species Orrella dioscoreae 753 0 Pusillimonas 779 1 305976 2 genus 7 0 no rank 2640016 1 772 0 0 1 1007105 species Pusillimonas sp. T7-7 772 1 628 Basilea genus 1472344 2 0 8 620 Basilea psittacipulmonis species 1 1472345 0 1 2082 Taylorella genus 3 29574 0 5 0 species 1 29575 Taylorella equigenitalis 1015 1062 Taylorella asinigenitalis 84590 1 species 0 1 Achromobacter 9223 genus 222 6 0 216 0 species 85698 1 Achromobacter xylosoxidans 3599 1 32002 species 1941 Achromobacter denitrificans 0 917 no rank 1 2626865 0 917 Achromobacter sp. AONIH1 1 1758194 species 0 1 217204 species Achromobacter insolitus 920 0 0 Achromobacter spanius 1630 species 217203 1 0 23 genus 507 2 1 Alcaligenes 3359 3336 Alcaligenes faecalis 511 1 species 0 1 1102 Advenella genus 290425 3 0 15 0 664 Advenella mimigardefordensis 1 302406 species 423 Advenella kashmirensis 310575 1 species 0 359336 2 genus 700 Castellaniella 1 9 0 Castellaniella defragrans 691 1 75697 species 0 1 Paenalcaligenes 551 genus 1100891 2 0 2 Paenalcaligenes hominis 549 species 643674 1 0 0 3 genus 90243 2 1 Oligella 567 0 564 Oligella urethralis 1 90245 species genus 17 517 13267 Bordetella 1 0 375 species 1 35814 Bordetella holmesii 461 0 0 species 463040 1 Bordetella genomosp. 13 790 species 1 1331258 638 Bordetella pseudohinzii 0 1416806 1 species 884 Bordetella genomosp. 8 0 Bordetella bronchiseptica 1715 species 1 518 0 species 94624 1 Bordetella petrii 801 0 742 Bordetella flabilis 463014 1 species 0 520 1 species 1060 Bordetella pertussis 0 0 1 103855 species 774 Bordetella hinzii Bordetella genomosp. 9 607 species 1416803 1 0 1 463024 species 911 Bordetella genomosp. 6 0 0 species 1 519 Bordetella parapertussis 940 123899 1 species 586 Bordetella trematum 0 0 species 1 521 430 Bordetella avium 653 no rank 2630031 1 0 Bordetella sp. H567 653 1697043 1 species 0 0 species 463025 1 900 Bordetella bronchialis 0 116 1 10766 Rhodocyclales order 206389 22 1959 Rhodocyclaceae 1 family 75787 6 0 36 1 75788 no rank 479 0 479 Rhodocyclaceae bacterium species 1898103 1 0 19 0 2 146937 genus 1 574 Azospira 0 1 146939 species Azospira oryzae 555 10 0 551759 2 genus Aromatoleum 870 1 Aromatoleum aromaticum 860 551760 1 species 0 2008794 12 family 1 Zoogloeaceae 7945 149 0 0 107 genus 33057 6 1 Thauera 4203 96773 1 species Thauera chlorobenzoica 798 0 species 1134435 1 Thauera humireducens 727 0 no rank 2 2609274 1870 0 0 2005884 1 species 880 Thauera sp. K11 0 1 85643 species Thauera sp. MZ1T 990 0 1 59405 species 701 Thauera aromatica 12960 5 genus 1 3593 Azoarcus 83 0 species 418699 1 745 Azoarcus olearius 0 2629479 2 no rank 2030 0 0 species 748247 1 916 Azoarcus sp. KH32C 0 species 1 198107 1114 Azoarcus sp. CIB Azoarcus sp. SY39 735 species 1 2067960 0 0 8 family 2008795 3 746 Azonexaceae 1 0 5 Dechloromonas 738 1 genus 73029 2 1 259537 species Dechloromonas aromatica 733 0 12 119066 no rank 9138 0 0 44 genus 6 33055 6607 Kinetoplastibacterium 1 233181 1 species 1103 Kinetoplastibacterium blastocrithidii 0 Candidatus Kinetoplastibacterium desouzaii 1723 species 994692 1 0 Candidatus Kinetoplastibacterium galatii 1020 species 994695 1 0 1267 Candidatus Kinetoplastibacterium oncopeltii species 1 994696 0 0 species 33056 1 Candidatus Kinetoplastibacterium crithidii 1450 1 189384 genus 154 0 0 154 Candidatus Tremblaya princeps species 1 189385 genus 1301080 1 366 0 Candidatus Nasuia deltocephalinicola 366 1 1160784 species 0 2 0 1175 Candidatus Profftella 1 2 1381133 genus 0 species 669502 1 Candidatus Profftella armatura 1173 0 3 1 Candidatus Accumulibacter 836 genus 327159 2 0 1 327160 species Candidatus Accumulibacter phosphatis 833 37 206351 order 1 16323 Neisseriales 160 0 family 13 1499392 Chromobacteriaceae 6238 1 0 94 9 0 2 568394 genus 707 Pseudogulbenkiania 1 2642558 1 no rank 698 0 698 Pseudogulbenkiania sp. NH8B species 1 748280 0 0 3495 4 90153 no rank 71 0 3495 Chromobacterium 1 4 535 genus 0 species 536 1 917 Chromobacterium violaceum 0 Chromobacterium vaccinii 1529 species 1108595 1 0 978 no rank 1 2641838 0 978 Chromobacterium sp. ATCC 53434 2059672 1 species 1 590 Laribacter 2 168470 genus 6 0 0 species 1 168471 584 Laribacter hongkongensis 9 0 187 2 genus 1 Aquaspirillum 590 581 no rank 2620219 1 0 0 581 Aquaspirillum sp. LM1 species 1938604 1 22 0 1 762 Jeongeupia 885864 2 genus 740 2619593 1 no rank 0 0 Jeongeupia sp. USM3 740 1906741 1 species 9925 Neisseriaceae 1 family 481 23 0 58 1 0 1 556 Simonsiella 71 2 genus 0 Simonsiella muelleri 555 species 72 1 genus 2 1193515 1 Snodgrassella 1446 0 3 0 1 1196083 species Snodgrassella alvi 1443 0 1157 421605 1 no rank 0 1157 Neisseriaceae bacterium DSM 100970 species 2052837 1 13 0 59 3 genus 1257 Vitreoscilla 1 504 Vitreoscilla filiformis 1 63 species 0 0 no rank 1 2627922 740 96942 1 species Vitreoscilla sp. C1 740 0 genus 2 538 458 Eikenella 1 0 2 species 1 539 456 Eikenella corrodens 0 0 73 genus 12 482 1 Neisseria 4993 379 Neisseria zoodegmatis species 326523 1 0 0 species 1 488 264 Neisseria mucosa 1 495 species 291 Neisseria elongata 0 486 1 species Neisseria lactamica 427 0 1 487 species 1443 Neisseria meningitidis 0 628 no rank 2623750 2 0 0 254 Neisseria sp. 10022 species 1853276 1 Neisseria sp. KEM232 374 species 1 655307 0 0 species 490 1 262 Neisseria sicca 0 1 485 species 508 Neisseria gonorrhoeae 28091 1 species 430 Neisseria weaveri 0 1 1853278 species 288 Neisseria sp. 10023 0 0 1585 2 33809 no rank species 543913 1 696 beta proteobacterium CB 0 889 Betaproteobacteria bacterium GR16-43 1904640 1 species 0 order 32003 44 Nitrosomonadales 15125 1 0 97 28 0 206379 12 family 1 6107 Nitrosomonadaceae 34 0 Nitrosomonas 4789 1 7 914 genus no rank 2 2609265 1951 0 Nitrosomonas sp. Is79A3 853 1 261292 species 0 1098 Nitrosomonas sp. AL212 species 153948 1 0 0 433 Nitrosomonas europaea species 1 915 Nitrosomonas communis 933 1 44574 species 0 632 Nitrosomonas eutropha species 1 916 0 0 44577 1 species 806 Nitrosomonas ureae 0 12 genus 35798 4 1 Nitrosospira 1290 35799 1 species 389 Nitrosospira briensis 0 502 Nitrosospira lacus 1288494 1 species 0 species 1231 1 Nitrosospira multiformis 387 0 0 23 family 5 2008793 Sterolibacteriaceae 1242 1 0 4 genus 2 378210 1 Methyloversatilis 605 1 2639971 no rank 601 0 0 species 1842540 1 Methyloversatilis sp. RAC08 601 1 Sulfuritalea 614 1054211 2 genus 13 0 0 Sulfuritalea hydrogenivorans 601 species 748811 1 11 0 1019 Gallionellaceae 1 5 90627 family 3 0 2 96 genus 1 Gallionella 471 0 species 370405 1 468 Gallionella capsiferriformans 314343 2 genus Sideroxydans 537 1 8 0 0 529 Sideroxydans lithotrophicus species 63745 1 8 0 Thiobacillaceae 583 1 3 2008790 family 0 9 genus 2 919 1 Thiobacillus 575 species 1 36861 566 Thiobacillus denitrificans 0 0 46 1 Methylophilaceae 5057 family 32011 14 1 2052 Candidatus Methylopumilus 1679002 3 genus 10 0 Candidatus Methylopumilus turicensis 595 species 1581680 1 0 1447 Candidatus Methylopumilus planktonicus 1 1581557 species 0 3 0 1 373 Methylobacillus 2 404 genus 0 1 405 species 370 Methylobacillus flagellatus 13 0 81682 3 genus 698 Methylovorus 1 0 Methylovorus glucosotrophus 359 1 266009 species 0 326 2634027 1 no rank 0 326 Methylovorus sp. MP688 1 887061 species genus 359407 3 1 Methylotenera 1418 0 7 489 Methylotenera mobilis 359408 1 species 0 0 species 1055487 1 Methylotenera versatilis 922 genus 2 16 470 Methylophilus 1 0 5 465 2630143 1 no rank 0 1662285 1 species 465 Methylophilus sp. TWE2 0 1020 4 2772226 family 0 1778653 2 genus Sulfuriferula 448 1 4 0 444 no rank 1 2637784 0 444 Sulfuriferula sp. AH1 species 1985873 1 0 0 4 genus 935200 2 572 Sulfuricella 1 Sulfuricella denitrificans 568 1 649841 species 0 68525 198 subphylum 163731 0 0 99 1 Deltaproteobacteria 86384 class 28221 127 order 20 213118 Desulfobacterales 10023 1 0 54 2551 Desulfobulbaceae 1 9 213121 family 22 0 0 7 genus 53318 2 826 Desulfocapsa 1 65555 1 species 819 Desulfocapsa sulfexigens 0 427 Desulfobulbus 1 893 2 genus 7 0 0 species 1 1986146 420 Desulfobulbus sp. ORNL 19 0 2 109168 genus 1 794 Desulfotalea 0 species 1 84980 Desulfotalea psychrophila 775 0 5 Desulfurivibrio 482 1 genus 2 427922 0 species 1 427923 477 Desulfurivibrio alkaliphilus 25 0 1 Desulfobacteraceae 7418 10 213119 family 4 0 2 218207 genus 1 Desulfatibacillum 2674 Desulfatibacillum alkenivorans 2670 species 259354 1 0 0 9 1 Desulfobacterium 604 genus 2295 2 species 1 2296 Desulfobacterium autotrophicum 595 0 Desulfobacula 2433 1 2 28222 genus 3 0 0 Desulfobacula toluolica 2430 species 28223 1 0 16 genus 3 896 1 Desulfococcus 1682 0 1 181663 species 1037 Desulfococcus oleovorans 0 Desulfococcus multivorans 629 species 897 1 100 0 69541 24 order 1 Desulfuromonadales 13796 0 57 1 9597 Geobacteraceae family 213422 14 14 0 1 554 Geoalkalibacter 2 392332 genus 483547 1 species 540 Geoalkalibacter subterraneus 0 genus 28231 11 Geobacter 8986 1 0 119 1203471 1 species 566 Geobacter daltonii 0 0 Geobacter uraniireducens 2741 351604 1 species 0 2627627 2 no rank 1879 Geobacter sp. M18 1280 species 443143 1 0 0 Geobacter sp. M21 599 species 443144 1 Geobacter metallireducens 933 28232 1 species 0 0 313985 1 species Geobacter lovleyi 492 Geobacter bemidjiensis 726 1 225194 species 0 1 35554 species 471 Geobacter sulfurreducens 0 477 Geobacter anodireducens 1340425 1 species 0 0 Geobacter pickeringii 582 species 1 345632 25 0 213421 9 family Desulfuromonadaceae 4099 1 32 0 1 Pelobacter 1893 5 18 genus 0 species 29543 1 520 Pelobacter propionicus 426 1 2620299 no rank 0 1 1842532 species Pelobacter sp. SFB93 426 0 0 Pelobacter carbinolicus 443 1 19 species 0 species 29542 1 472 Pelobacter acetylenicus 25 0 3 890 genus 1 2181 Desulfuromonas 0 2614637 1 no rank 762 0 762 Desulfuromonas sp. DDH964 species 1 1823759 0 Desulfuromonas soudanensis 1394 1603606 1 species 6 213113 order 1 2283 Desulfurellales 3 0 1 2280 Desulfurellaceae 5 117942 family 5 0 1 Hippea 721 84404 2 genus 3 0 species 84405 1 Hippea maritima 718 0 4 0 2 33001 genus Desulfurella 1554 1 species 1 33002 1550 Desulfurella acetivorans 0 453227 4 order 1 Desulfarculales 692 4 0 1 Desulfarculaceae 688 family 453228 3 0 6 Desulfarculus 682 1 453229 2 genus 14 0 668 Desulfarculus baarsii 453230 1 species 0 1 1948 Syntrophobacterales 213462 9 order 12 0 0 18 family 5 213468 1 1404 Syntrophaceae 0 5 560 Desulfomonile 1 genus 2357 2 0 555 Desulfomonile tiedjei species 2358 1 0 386 60892 1 genus Desulfobacca acetoxidans 386 species 1 60893 0 genus 1 43773 440 0 0 species 1 316277 440 Syntrophus aciditrophicus 6 0 1 Syntrophobacteraceae 532 213465 3 family 8 0 29526 2 genus 526 Syntrophobacter 1 species 1 119484 518 Syntrophobacter fumaroxidans 0 0 393 47368 Myxococcales 1 order 38 29 0 4015 3 224462 suborder family 224464 3 1 Kofleriaceae 4015 0 10 0 13 Haliangium 4005 1 genus 162027 2 3992 Haliangium ochraceum species 1 80816 0 suborder 80812 8 15801 0 0 26 family 49 5 1 Polyangiaceae 12595 genus 39643 2 Sorangium 10178 1 0 40 0 species 56 1 Sorangium cellulosum 10138 50 2 genus 1 Chondromyces 2391 3 0 52 1 species 2388 Chondromyces crocatus 0 5 0 3206 Sandaracinaceae 1 1055686 3 family 0 18 genus 2 1055688 3201 Sandaracinus 1 0 927083 1 species Sandaracinus amylolyticus 3183 27159 suborder 26 80811 0 family 9 39 1 9128 Archangiaceae 0 100 40 2 genus 1 Stigmatella 1362 12 0 1 41 species Stigmatella aurantiaca 1350 0 17 0 1 Archangium 4280 47 2 genus Archangium gephyra 4263 48 1 species 0 10 0 1 1902 Cystobacter 2 42 genus 0 1892 Cystobacter fuscus 1 43 species 1484 Melittangium 1 genus 2 44 0 14 0 1470 Melittangium boletus 1 83453 species 0 3 family 3 1524213 1 1179 Vulgatibacteraceae 13 0 Vulgatibacter 1176 1 1524214 2 genus 0 1 1391653 species Vulgatibacter incomptus 1163 5095 Anaeromyxobacteraceae 1 family 1524215 5 0 25 77 0 Anaeromyxobacter 5070 1 4 161492 genus 2805 no rank 2620896 2 0 0 1269 Anaeromyxobacter sp. K 1 447217 species 1536 Anaeromyxobacter sp. Fw109-5 species 1 404589 0 Anaeromyxobacter dehalogenans 2188 161493 1 species 0 1 11757 Myxococcaceae family 31 9 0 66 Corallococcus 3449 1 83461 3 genus 52 0 0 1541 Myxococcus macrosporus 1 35 species 0 1856 Corallococcus coralloides species 184914 1 0 220 genus 5 32 8242 Myxococcus 1 0 Myxococcus stipitatus 1676 species 1 83455 0 1649 Myxococcus hansupus species 1 1297742 0 3358 Myxococcus fulvus species 33 1 1 34 species Myxococcus xanthus 1339 0 1 10175 Desulfovibrionales 213115 25 order 122 0 0 55 8881 Desulfovibrionaceae 1 family 194924 18 genus 2035811 4 1460 Pseudodesulfovibrio 1 0 13 Pseudodesulfovibrio indicus 554 1716143 1 species 0 0 species 57320 1 Pseudodesulfovibrio profundus 338 Pseudodesulfovibrio aespoeensis 555 1 182210 species 0 41707 2 genus 1 1371 Lawsonia 3 0 0 species 29546 1 Lawsonia intracellularis 1368 477 genus 1 2582840 0 Desulfovibrio africanus 477 873 1 species 0 genus 1 2794998 571 0 571 Desulfovibrio salexigens species 880 1 0 51 0 9 872 genus 4947 Desulfovibrio 1 256 2593640 1 no rank 0 0 1 631220 species Desulfovibrio sp. G11 256 0 Candidatus Desulfovibrio trichonymphae 154 species 1725232 1 0 881 1 species Desulfovibrio vulgaris 1651 346 Desulfovibrio piger 1 901 species 0 0 Desulfovibrio desulfuricans 874 876 1 species Desulfovibrio alaskensis 406 species 58180 1 0 0 925 Desulfovibrio magneticus species 184917 1 0 Desulfovibrio fairfieldensis 284 species 44742 1 0 family 2 213117 343 0 3 1 343 Desulfohalobium genus 2 45662 species 45663 1 Desulfohalobium retbaense 340 0 0 4 family 4 213116 1 829 Desulfomicrobiaceae genus 898 3 825 Desulfomicrobium 1 0 11 0 1 132132 species 338 Desulfomicrobium orale 0 species 899 1 Desulfomicrobium baculatum 476 29547 71 class 1 Epsilonproteobacteria 77347 54 0 111 0 65 213849 order Campylobacterales 74053 1 0 1957 2771472 5 family 3 265570 genus 1103 Sulfurovum 1 19 0 0 2646778 1 no rank 542 0 542 Sulfurovum sp. NBC37-1 species 1 387093 542 Sulfurovum lithotrophicum species 206403 1 0 genus 269260 2 Nitratifractor 854 1 0 3 species 269261 1 Nitratifractor salsuginis 851 0 0 4 2771471 family 2174 0 254 1 286130 genus species 1 148813 Sulfuricurvum kujiense 254 0 10 0 1 Sulfurimonas 1920 3 202746 genus 0 1 39766 species 1144 Sulfurimonas denitrificans 0 species 202747 1 Sulfurimonas autotrophica 766 family 72294 41 1 55630 Campylobacteraceae 0 107 14630 no rank 2321108 5 0 0 3534 1 2321187 genus 0 Arcobacter sp. LPB0137 3534 1 1850254 species 0 3495 2321207 1 no rank species 1 944547 3495 Arcobacter sp. L 0 28196 3 genus 7601 Arcobacter 1 72 0 0 28199 1 species Arcobacter nitrofigilis 2953 0 28197 1 species Arcobacter butzleri 4576 1 Campylobacter 36201 genus 26 194 0 268 1692 Campylobacter insulaenigrae 1 260714 species 0 0 1031542 1 species 1581 Campylobacter volucris species 1 488546 1329 Campylobacter peloridis 0 0 species 200 1 Campylobacter curvus 220 0 4740 no rank 4 2593542 0 Campylobacter sp. RM16704 1762 1500960 1 species Campylobacter sp. RM8964 1195 1660074 1 species 0 1660073 1 species 657 Campylobacter sp. RM6137 0 0 1 1660076 species 1126 Campylobacter sp. RM12175 Campylobacter helveticus 711 species 28898 1 0 Campylobacter ureolyticus 1773 species 1 827 0 species 1 197 Campylobacter jejuni 3070 0 species 1 1965231 2129 Campylobacter pinnipediorum 0 Campylobacter coli 2494 species 195 1 0 0 species 1 497724 1525 Campylobacter subantarcticus 2418 Campylobacter sputorum species 1 206 0 1 522485 species 983 Campylobacter avium 0 75658 1 species Campylobacter lanienae 663 0 199 1 species 967 Campylobacter concisus 0 Campylobacter hyointestinalis 1120 species 1 198 0 0 Campylobacter gracilis 240 species 824 1 0 species 374106 1 1121 Campylobacter cuniculorum 0 species 1 201 Campylobacter lari 3844 1547 Campylobacter fetus 1 196 species 0 0 1 76517 species Campylobacter hominis 907 0 species 1 1244531 859 Campylobacter iguaniorum 73 0 1 Sulfurospirillum 4692 57665 9 genus 339 Sulfurospirillum cavolei 1 366522 species 0 Sulfurospirillum deleyianum 612 65553 1 species 0 0 500 Sulfurospirillum halorespirans 194424 1 species 0 2070 3 2618290 no rank 597 Sulfurospirillum sp. JPD-1 species 220622 1 0 1 1581011 species 782 Sulfurospirillum sp. UCH001 0 0 species 1 1986224 Sulfurospirillum sp. SL2-1 691 0 44674 1 species Sulfurospirillum barnesii 593 species 66821 1 505 Sulfurospirillum multivorans 0 15 0 1 Helicobacteraceae 14181 72293 14 family 0 genus 843 1 270 0 270 Wolinella succinogenes 844 1 species 209 12 genus 13896 Helicobacter 1 45 0 0 Helicobacter pylori 8429 species 210 1 species 1 217 Helicobacter mustelae 437 0 390 Helicobacter himalayensis species 1591088 1 0 0 270 Helicobacter felis 214 1 species 0 Helicobacter bilis 662 37372 1 species 532 Helicobacter cinaedi species 213 1 0 0 1 138563 species 1108 Helicobacter cetorum 421 Helicobacter acinonychis species 1 212 0 0 no rank 1 2593540 406 0 Helicobacter sp. MIT 01-6242 406 species 222136 1 species 76936 1 Helicobacter typhlonius 489 0 0 1 32025 species 707 Helicobacter hepaticus 0 5 order 235899 5 1 3240 Nautiliales 2795691 1 family 501 0 269258 1 genus 501 0 501 no rank 2624044 1 0 0 501 Nitratiruptor sp. SB155-2 species 387092 1 1 0 Nautiliaceae 2734 1 3 224467 family Nautilia 2733 1 genus 191291 2 0 6 1 244787 species Nautilia profundicola 2727 0 0 1603 955134 Gammaproteobacteria 1 class 1236 913 3 0 1 Orbales 3279 1240482 6 order 1 3276 Orbaceae family 1240483 5 0 18 9 0 Frischella 1418 1 1335631 2 genus 0 1409 Frischella perrara species 1267021 1 Gilliamella 1840 1 genus 2 1193503 0 9 1831 Gilliamella apicola 1 1196095 species 0 284 0 164524 Alteromonadales 1 105 135622 order 8 0 6 267893 family Idiomarinaceae 1995 1 genus 5 135575 1987 Idiomarina 1 0 39 457 Idiomarina piscisalsi 1096243 1 species 0 0 533 Idiomarina loihiensis 1 135577 species 958 2614829 2 no rank 0 2055892 1 species 425 Idiomarina sp. X4 0 0 533 Idiomarina sp. OT37-5b species 1 2100422 family 25 267888 Pseudoalteromonadaceae 29203 1 0 24 0 474 Pseudoalteromonas 29179 1 genus 53246 24 1 166935 species 978 Pseudoalteromonas translucida 0 0 Pseudoalteromonas luteoviolacea 1435 species 43657 1 0 161398 1 species Pseudoalteromonas phenolica 1347 Pseudoalteromonas arctica 1164 species 1 394751 0 1429 Pseudoalteromonas spongiae species 1 298657 0 1 247523 species 1114 Pseudoalteromonas aliena 0 801 Pseudoalteromonas piscicida 43662 1 species 0 5 194690 no rank 8628 0 Pseudoalteromonas sp. Bsw20308 1139 species 283699 1 0 1514074 1 species Pseudoalteromonas sp. NC201 4258 0 species 1761891 1 Pseudoalteromonas sp. 13-15 977 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1167 1 1720343 species 0 0 1087 Pseudoalteromonas sp. SM9913 234831 1 species 0 Pseudoalteromonas piratica 1211 1 1348114 species 0 267375 1 species 833 Pseudoalteromonas marina 28109 1 species Pseudoalteromonas nigrifaciens 1063 0 0 species 43658 1 787 Pseudoalteromonas rubra Pseudoalteromonas issachenkonii 851 species 152297 1 0 929 Pseudoalteromonas haloplanktis 1 228 species 0 0 1 176102 species Pseudoalteromonas agarivorans 960 species 1 314281 1573 Pseudoalteromonas tunicata 0 1822 Pseudoalteromonas atlantica 1 288 species 0 0 883 Pseudoalteromonas tetraodonis species 1 43659 897 Pseudoalteromonas espejiana 28107 1 species 0 0 10 1 3593 Psychromonadaceae family 267894 4 0 14 genus 67572 3 3583 Psychromonas 1 0 1 2614957 no rank 1703 0 1 314282 species Psychromonas sp. CNPT3 1703 0 1 357794 species Psychromonas ingrahamii 1866 0 7 family 3 267892 651 Ferrimonadaceae 1 0 11 Ferrimonas 644 1 genus 2 44011 0 species 44012 1 Ferrimonas balearica 633 64 0 72275 29 family 83010 Alteromonadaceae 1 0 5 genus 2 261825 1 Agarivorans 840 0 680279 1 species 835 Agarivorans gilvus 0 1297 genus 1 1751872 Lacimicrobium alkaliphilum 1297 1 1526571 species 0 13 0 89404 3 genus Glaciecola 2223 1 0 1071 Glaciecola nitratireducens species 300231 1 1139 2618684 1 no rank 0 1 983545 species 1139 Glaciecola sp. 4H-3-7+YE-5 0 2 1621534 genus 1 Paraglaciecola 2585 9 0 2576 Paraglaciecola psychrophila species 326544 1 0 1 10253 Marinobacter 2742 10 genus 163 0 species 330734 1 Marinobacter psychrophilus 584 0 2349 3 83889 no rank 0 0 1 1671721 species Marinobacter sp. CP1 996 1 490759 species 692 Marinobacter sp. BSs20148 0 661 Marinobacter sp. LQ44 species 1749259 1 0 0 Marinobacter salarius 3981 1420917 1 species 1033846 1 species Marinobacter adhaerens 979 0 0 Marinobacter similis 601 1420916 1 species Marinobacter hydrocarbonoclasticus 905 species 1 2743 0 1874317 1 species 691 Marinobacter salinus 0 150 0 65748 Alteromonas 1 226 10 genus 0 46965 Alteromonas macleodii species 28108 1 1 233316 species 1296 Alteromonas stellipolaris 0 Alteromonas naphthalenivorans 1130 species 1 715451 0 0 3 2614992 no rank 3477 932 Alteromonas sp. Mac1 species 1777491 1 0 0 species 1 2058133 Alteromonas sp. MB-3u-76 1272 1 1917158 species Alteromonas sp. RW2A1 1273 0 0 species 314275 1 7688 Alteromonas mediterranea 0 3947 Alteromonas australica 1 589873 species 1095 Alteromonas addita species 1 287094 0 28 0 267889 9 family 12114 Colwelliaceae 1 1 Thalassotalea 1477 genus 2 1518149 0 5 species 1 1763536 1472 Thalassotalea crassostreae 0 50 0 10609 Colwellia 1 6 28228 genus 6269 no rank 196834 3 0 1816219 1 species 2581 Colwellia sp. PAMC 21821 0 1787 Colwellia sp. PAMC 20917 1 1816218 species 0 1 58049 species Colwellia sp. MT41 1901 0 1898 Colwellia psychrerythraea 28229 1 species 0 Colwellia beringensis 2392 species 1967665 1 0 267890 25 family 1 Shewanellaceae 31780 47 0 258 0 31733 Shewanella 1 24 22 genus 0 577 Shewanella loihica species 359303 1 0 Shewanella psychrophila 2467 1 225848 species 0 species 60961 1 Shewanella woodyi 1803 0 Shewanella japonica 1998 93973 1 species 24 1 species 782 Shewanella putrefaciens 0 0 60478 1 species Shewanella amazonensis 554 0 Shewanella marisflavi 479 260364 1 species 0 species 1 192073 Shewanella denitrificans 953 0 404011 1 species Shewanella piezotolerans 810 0 426 Shewanella bicestrii species 1 2018305 0 Shewanella baltica 2909 1 62322 species 3681 196818 6 no rank 0 1 94122 species 579 Shewanella sp. ANA-3 0 species 1 60481 Shewanella sp. MR-7 547 0 541 Shewanella sp. WE21 2029986 1 species 0 0 species 1 351745 Shewanella sp. W3-18-1 709 843 Shewanella sp. Pdp11 1 2059264 species 0 0 species 60480 1 Shewanella sp. MR-4 462 0 species 271098 1 7431 Shewanella halifaxensis 0 687 Shewanella pealeana species 1 70864 Shewanella violacea 2321 60217 1 species 0 1500 Shewanella sediminis 1 271097 species 0 0 species 1 70863 Shewanella oneidensis 528 0 Shewanella frigidimarina 1569 species 1 56812 3 267891 family 1894 Moritellaceae 1 20 0 2 58050 genus Moritella 1874 1 5 0 species 1 80854 Moritella viscosa 1869 0 1934945 4 order Immundisolibacterales 1004 1 15 0 family 1934946 3 1 989 Immundisolibacteraceae 0 7 0 9 genus 1934947 2 982 Immundisolibacter 1 0 Immundisolibacter cernigliae 973 species 1 1810504 Xanthomonadales 76757 1 order 135614 54 0 316 0 466 family 39 32033 69797 Xanthomonadaceae 1 3 0 2 2370 genus 1 Xylella 5577 0 Xylella fastidiosa 5574 2371 1 species 338 17 genus Xanthomonas 35745 1 553 0 Xanthomonas euvesicatoria 859 species 456327 1 0 0 48664 1 species 1322 Xanthomonas fragariae 0 species 347 1 7541 Xanthomonas oryzae Xanthomonas alfalfae 568 366650 1 species 0 2497 Xanthomonas translucens species 1 343 0 0 53413 1 species 521 Xanthomonas axonopodis Xanthomonas phaseoli 680 1 1985254 species 0 0 species group 2 643453 7789 1246 Xanthomonas fuscans 1 366648 species 0 0 species 1 346 Xanthomonas citri 6543 Xanthomonas perforans 622 species 1 442694 0 0 species 339 1 8465 Xanthomonas campestris 1 56459 species Xanthomonas vasicola 502 0 0 Xanthomonas sacchari 971 species 1 56458 899 Xanthomonas hortorum species 1 56454 0 species 1 56460 Xanthomonas vesicatoria 1236 0 720 Xanthomonas albilineans 1 29447 species 0 0 7 genus 83614 2 1 651 Luteimonas 0 Luteimonas sp. 100111 644 species 1 2006110 1 Lysobacter 10075 68 5 genus 58 0 0 3428 Lysobacter capsici 435897 1 species 0 1717 Lysobacter gummosus 262324 1 species 0 Lysobacter enzymogenes 1115 species 1 69 species 84531 1 Lysobacter antibioticus 3757 0 Pseudoxanthomonas 2326 1 genus 83618 3 0 34 0 314722 1 species Pseudoxanthomonas suwonensis 1645 Pseudoxanthomonas spadix 647 species 1 415229 0 197 0 Stenotrophomonas 14957 1 9 40323 genus 0 Stenotrophomonas acidaminiphila 1514 species 128780 1 4 196198 no rank 4315 0 0 Stenotrophomonas sp. MYb57 1361 species 1827305 1 1198 Stenotrophomonas sp. KCTC 12332 species 1 1793721 0 0 578 Stenotrophomonas sp. LM091 1904944 1 species 1178 Stenotrophomonas sp. WZN-1 species 1 2005046 0 Stenotrophomonas nitritireducens 1198 species 1 83617 0 0 1 216778 species 696 Stenotrophomonas rhizophila 0 species group 1 995085 7037 species 40324 1 7037 Stenotrophomonas maltophilia 0 0 59 family 14 1775411 1 6644 Rhodanobacteraceae 12 0 323413 2 genus 1105 Dokdonella 1 0 1093 Dokdonella koreensis 323415 1 species 1 711 Luteibacter 242605 2 genus 3 0 708 Luteibacter rhizovicinus 1 242606 species 0 1 1161 Rhodanobacter genus 75309 2 0 9 0 species 666685 1 1152 Rhodanobacter denitrificans 0 639 1 2233801 genus Xanthomonadales bacterium D13 639 2021234 1 species 0 0 47 genus 4 231454 Dyella 2339 1 692 Dyella jiangningensis species 1 1379159 0 Dyella japonica 809 species 231455 1 0 0 species 1 445710 791 Dyella thiooxydans 0 5 1 Frateuria 630 genus 70411 2 0 625 Frateuria aurantia 81475 1 species 0 91 Aeromonadales 18822 1 order 135624 29 family 28 84642 1 Aeromonadaceae 18731 0 127 0 513 1 15060 Aeromonas genus 18 642 644 1 species Aeromonas hydrophila 3486 0 0 species 654 1 Aeromonas veronii 1574 948519 1 species 398 Aeromonas rivipollensis 0 0 478 Aeromonas dhakensis 196024 1 species 648 1 species 300 Aeromonas caviae 0 257493 8 no rank 4317 0 1 1920107 species Aeromonas sp. ASNIH7 304 0 Aeromonas sp. ASNIH1 984 1636606 1 species 0 0 Aeromonas sp. CA23 641 species 2033032 1 0 Aeromonas sp. ASNIH5 498 species 1 1758179 715 Aeromonas sp. ASNIH4 species 1636609 1 0 400 Aeromonas sp. ASNIH2 species 1636607 1 0 0 species 2033033 1 427 Aeromonas sp. CU5 0 348 Aeromonas sp. ASNIH3 1636608 1 species 0 1 652 species Aeromonas schubertii 532 1 645 species Aeromonas salmonicida 2269 0 Aeromonas aquatica 652 species 1 558964 0 0 651 1 species 541 Aeromonas media 0 13 genus 225143 3 Oceanisphaera 1324 1 1 1416627 species 724 Oceanisphaera profunda 0 species 1903694 1 587 Oceanisphaera sp. AMac2203 0 2 129577 genus 1 Oceanimonas 729 4 0 725 no rank 1 2636315 0 0 725 Oceanimonas sp. GK1 1 511062 species 4 0 2 43947 genus Tolumonas 491 1 Tolumonas auensis 487 species 1 43948 0 5 0 2 347533 genus 1000 Zobellella 1 0 species 1 347534 995 Zobellella denitrificans 0 166 order 73 135619 1 Oceanospirillales 41100 6 1920240 family 1 Kangiellaceae 3246 13 0 90 0 1 Kangiella 3233 5 261963 genus 1 914150 species 680 Kangiella geojedonensis 0 0 species 1561924 1 Kangiella profundi 892 0 species 1 1144748 723 Kangiella sediminilitoris 0 848 Kangiella koreensis species 1 261964 13 135620 family Oceanospirillaceae 8530 1 43 0 Oleispira 1114 1 188907 2 genus 7 0 Oleispira antarctica 1107 species 188908 1 0 8 0 1 Marinobacterium 1523 2 48075 genus Marinobacterium aestuarii 1515 species 1 1821621 0 3237 Marinomonas 1 genus 28253 4 0 27 936476 1 species Marinomonas posidonica 973 0 0 1 196814 no rank 1265 0 1265 Marinomonas sp. MWYL1 1 400668 species 119864 1 species 972 Marinomonas mediterranea 0 2 1537406 genus 1 Bacterioplanes 1471 15 0 1 1249553 species 1456 Bacterioplanes sanyensis 0 2 187492 genus 1 1142 Thalassolituus 16 0 0 species 187493 1 Thalassolituus oleivorans 1126 5 255527 family 1 2279 Saccharospirillaceae 6 0 14 0 1 Reinekea 1178 230494 2 genus Reinekea forsetii 1164 1 1336806 species 0 6 0 1445504 2 genus 1095 Gynuella 1 0 1 1445505 species Gynuella sunshinyii 1089 3 224379 family 1 945 Hahellaceae 6 0 genus 2 158481 1 939 Hahella 0 11 Hahella chejuensis 928 158327 1 species 0 Halomonadaceae 19253 1 family 33 28256 0 135 1 868 Cobetia genus 2 204286 0 3 1 28258 species 865 Cobetia marina 0 187 0 11103 Halomonas 1 2745 15 genus 0 1178482 1 species 1104 Halomonas huangheensis species 507626 1 690 Halomonas chromatireducens 0 0 species 475662 1 1307 Halomonas beimenensis 0 1 1897729 species 849 Halomonas aestuarii 0 species 1 213554 577 Halomonas campaniensis 0 Halomonas hydrothermalis 644 species 115561 1 0 2609666 8 no rank 5745 species 1118153 1 535 Halomonas sp. GFAJ-1 0 0 1 1962264 species Halomonas sp. 'Soap Lake #7' 668 748 Halomonas sp. GT 1 1971364 species 0 species 1 1610576 689 Halomonas sp. R57-5 0 0 Halomonas sp. 1513 909 1 1883416 species 0 Halomonas sp. KO116 620 1504981 1 species 0 species 2136172 1 Halomonas sp. SF2003 914 0 species 1949203 1 662 Halomonas sp. 'Soap Lake #6' 12 0 42054 2 genus 1 699 Chromohalobacter 0 species 1 158080 687 Chromohalobacter salexigens 0 3238 no rank 6 114403 0 21 1 1765 Candidatus Portiera genus 2 235572 Candidatus Portiera aleyrodidarum 1744 species 1 91844 0 0 4 genus 1495768 2 944 Candidatus Evansia 1 0 species 1495769 1 940 Candidatus Evansia muelleri 0 4 genus 2 114185 1 Candidatus Carsonella 529 species 1 114186 Candidatus Carsonella ruddii 525 0 Salinicola 938 1 genus 404432 2 0 9 species 1771309 1 Salinicola tamaricis 929 0 26 0 504090 3 genus 1459 Kushneria 1 0 597 Kushneria marisflavi species 1 157779 species 1 698828 Kushneria konosiri 836 0 0 8 1 Halotalea 813 genus 376488 2 0 Halotalea alkalilenta 805 species 376489 1 0 35 1 5377 Alcanivoracaceae family 224372 9 20 0 2025617 2 genus 1015 Ketobacter 1 species 1917421 1 Ketobacter alkanivorans 995 0 113 0 1 4327 Alcanivorax 6 59753 genus 1 59754 species 820 Alcanivorax borkumensis 0 0 Alcanivorax xenomutans 857 1 1094342 species 0 Alcanivorax dieselolei 857 species 1 285091 0 978 Alcanivorax pacificus species 1 1306787 702 2638842 1 no rank 0 0 1113728 1 species 702 Alcanivorax sp. NBRC 101098 1304 Oleiphilaceae 1 3 191033 family 56 0 0 6 genus 2 141450 Oleiphilus 1248 1 0 1242 Oleiphilus messinensis species 141451 1 61 0 1706369 30 order 1 16220 Cellvibrionales 10 0 1706373 5 family 1 2820 Microbulbiferaceae 63 0 Microbulbifer 2810 1 4 48073 genus 1 260552 species Microbulbifer agarilyticus 872 0 species 1769779 1 Microbulbifer aggregans 876 0 0 999 Microbulbifer thermotolerans 252514 1 species 3642 Spongiibacteraceae 1 family 7 1706375 0 55 Zhongshania 936 1 genus 1434050 2 0 17 919 Zhongshania aliphaticivorans 1 1470434 species 0 8 0 2 1084558 genus 1771 Oceanicoccus 1 0 1763 Oceanicoccus sagamiensis 716816 1 species genus 2 630749 880 Spongiibacter 1 0 2 1 2631504 no rank 878 0 878 Spongiibacter sp. IMCC21906 species 1620392 1 0 40 0 13 1706371 family 6886 Cellvibrionaceae 1 2 316625 genus 1070 Saccharophagus 1 9 0 Saccharophagus degradans 1061 species 1 86304 0 1 Agarilytica 1585 genus 2 2036021 0 4 Agarilytica rhodophyticola 1581 species 1737490 1 0 733 Simiduia 1 genus 2 447467 0 6 727 Simiduia agarivorans species 447471 1 0 0 16 genus 10 4 Cellvibrio 2407 1 1631 no rank 2624793 2 0 species 1 1987723 Cellvibrio sp. PSBB006 884 0 Cellvibrio sp. PSBB023 747 species 1 1945512 0 0 760 Cellvibrio japonicus species 1 155077 genus 2 2425 1051 Teredinibacter 1 0 8 0 1043 Teredinibacter turnerae 1 2426 species 1 2811 Halieaceae 1706372 4 family 14 0 genus 3 1217416 1 2797 Halioglobus 0 56 Halioglobus pacificus 1344 930806 1 species 0 Halioglobus japonicus 1397 930805 1 species 0 1749 no rank 2 33811 0 0 gamma proteobacterium HdN1 836 species 83406 1 endosymbiont of unidentified scaly snail isolate Monju 913 species 1 1248727 0 81 0 1 101091 Vibrionales 135623 44 order family 641 43 1 Vibrionaceae 101010 0 252 30 662 genus Vibrio 60126 1 639 0 0 Vibrio mimicus 1056 species 674 1 0 Vibrio furnissii 1255 species 29494 1 0 31656 species group 10 717610 0 2 2315253 species subgroup 1847 0 1274 Vibrio diabolicus 1 50719 species 0 species 150340 1 573 Vibrio antiquarius 0 species 669 1 Vibrio harveyi 2667 0 Vibrio owensii 2122 species 696485 1 0 663 1 species 2860 Vibrio alginolyticus Vibrio jasicida 812 species 766224 1 0 0 1 190895 species 2775 Vibrio rotiferianus 0 species 691 1 1533 Vibrio natriegens 0 1 680 species Vibrio campbellii 13062 Vibrio parahaemolyticus 3978 1 670 species 0 species 55601 1 1776 Vibrio anguillarum 0 0 3710 Vibrio coralliilyticus 190893 1 species Vibrio breoganii 821 1 553239 species 0 0 673 Vibrio fluvialis 676 1 species 1963 Vibrio tapetis 52443 1 species 0 0 1 1435069 species 1007 Vibrio tritonius 830 Vibrio nigripulchritudo 1 28173 species 0 0 Vibrio qinghaiensis 651 1 2025808 species 2 2614977 no rank 1217 0 448 Vibrio sp. 2521-89 1 2014742 species 0 0 1 1116375 species 769 Vibrio sp. EJY3 0 1 687 species Vibrio gazogenes 1056 0 1614 Vibrio tasmaniensis species 1 212663 0 2205 Vibrio scophthalmi 45658 1 species Vibrio cholerae 1434 species 666 1 0 0 Vibrio hyugaensis 1211 species 1 1534743 0 Vibrio vulnificus 3976 1 672 species 1376 1891919 1 species group 0 29498 1 species 1376 Vibrio tubiashii 0 1 Photobacterium 30728 genus 657 4 0 16 0 species 1 74109 Photobacterium profundum 1372 0 Photobacterium gaetbulicola 569 species 1 1295392 0 Photobacterium damselae 28771 species 38293 1 0 2 genus 246861 2 620 Grimontia 1 0 673 1 species Grimontia hollisae 618 Aliivibrio 5160 1 genus 4 511678 0 16 0 1 80852 species Aliivibrio wodanis 2504 0 1585 Aliivibrio fischeri 1 668 species 1 40269 species Aliivibrio salmonicida 1055 0 Paraphotobacterium 4124 1 2 2042066 genus 8 0 1 1755811 species Paraphotobacterium marinum 4116 0 order 118969 21 Legionellales 23631 1 0 18 444 15 family 1 20252 Legionellaceae 64 0 1 Tatlockia 1064 465 2 genus 13 0 0 1051 Tatlockia micdadei 1 451 species 445 12 genus Legionella 19124 1 136 0 0 species 446 1 Legionella pneumophila 6204 0 Legionella lansingensis 1001 species 1 45067 1124 Legionella clemsonensis 1 1867846 species 0 0 1525 Legionella fallonii 96230 1 species 0 Legionella waltersii 1278 66969 1 species species 1 29423 1008 Legionella oakridgensis 0 0 1608 Legionella longbeachae 450 1 species 0 Legionella sainthelensi 1749 species 28087 1 452 1 species Legionella spiritensis 605 0 0 1 449 species Legionella hackeliae 1168 Legionella endosymbiont of Polyplax serrata 1718 species 1 2005262 0 1 Coxiellaceae 3361 5 118968 family 32 0 1108 no rank 1 134284 0 0 1592897 1 species 1108 Coxiella-like endosymbiont 1 Coxiella 2221 3 776 genus 42 0 894 2676648 1 no rank 0 894 Coxiella endosymbiont of Amblyomma americanum 1 325775 species 0 1 777 species 1285 Coxiella burnetii 0 order 253 91347 229507 Enterobacterales 1 0 650 102420 Enterobacteriaceae 1 543 124 family 638 0 0 77 2955 Cronobacter 1 genus 413496 8 28141 1 species Cronobacter sakazakii 679 0 species 1 535744 337 Cronobacter universalis 0 447 Cronobacter condimenti species 1163710 1 0 0 Cronobacter dublinensis 376 species 413497 1 0 316 Cronobacter malonaticus 1 413503 species species 1 413501 Cronobacter muytjensii 373 0 0 species 1 413502 Cronobacter turicensis 350 genus 1330547 5 1 1825 Kosakonia 0 37 species 1158459 1 Kosakonia sacchari 367 0 0 species 497725 1 499 Kosakonia oryzae species 283686 1 Kosakonia radicincitans 582 0 Kosakonia cowanii 340 208223 1 species 0 259 0 Klebsiella 21250 1 10 570 genus 0 species 1 548 4600 Klebsiella aerogenes 0 1020 no rank 2 2608929 0 1 1934254 species 475 Klebsiella sp. M5al 0 species 1905288 1 545 Klebsiella sp. LTGPAF-6F Klebsiella michiganensis 1375 species 1 1134687 0 0 1 2026240 species Klebsiella quasivariicola 437 Klebsiella pneumoniae 9521 species 573 1 0 2516 Klebsiella oxytoca 571 1 species 0 0 565 Klebsiella quasipneumoniae species 1 1463165 0 957 Klebsiella variicola 1 244366 species 3916 36866 5 no rank 0 333 Enterobacteriaceae bacterium strain FGI 57 species 693444 1 0 species 1 2066051 Enterobacteriaceae bacterium ENNIH1 394 0 Enterobacteriaceae bacterium ENNIH3 379 1920128 1 species 0 0 2473 Plautia stali symbiont species 891974 1 0 species 1 1920109 Enterobacteriaceae bacterium ENNIH2 337 1 201 Candidatus Moranella 2 1048757 genus 1 0 0 Candidatus Moranella endobia 200 species 1048758 1 0 417 genus 22 547 1 Enterobacter 10915 0 2608935 9 no rank 2366 0 species 1692238 1 Enterobacter sp. FY-07 309 0 Enterobacter sp. 638 308 1 399742 species species 1977566 1 194 Enterobacter sp. Crenshaw 0 202 Enterobacter sp. E20 1560339 1 species 0 1 2051905 species Enterobacter sp. CRENT-193 255 0 0 1 1827481 species 229 Enterobacter sp. ODB01 species 1 1914861 Enterobacter sp. SA187 335 0 0 1868135 1 species 179 Enterobacter sp. HK169 species 1166130 1 355 Enterobacter sp. R4-368 0 8132 species group 12 354276 0 0 226 Enterobacter kobei 1 208224 species 0 Enterobacter ludwigii 237 species 299767 1 1 Enterobacter hormaechei 2108 3 158836 species 1606 0 0 Enterobacter xiangfangensis 198 1296536 1 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 304 subspecies 1812934 1 0 Enterobacter cloacae complex 'Hoffmann cluster IV' 205 1812935 1 species 0 species 550 1 Enterobacter cloacae 3554 0 0 Enterobacter asburiae 840 species 61645 1 0 636 2757714 3 no rank 209 Enterobacter cloacae complex bacterium species 1 2027919 0 1 2077137 species 231 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 0 Enterobacter cloacae complex sp. ECNIH7 196 1 1915310 species 326 Enterobacter cancerogenus 1 69218 species 0 1915 Raoultella 1 genus 160674 3 0 11 575 1 species 461 Raoultella planticola 0 Raoultella ornithinolytica 1443 54291 1 species 0 41 0 561 5 genus 1 Escherichia 17973 Escherichia albertii 774 species 1 208962 0 0 Escherichia coli 16612 species 562 1 0 1499973 1 species Escherichia marmotae 287 259 Escherichia fergusonii species 1 564 0 544 14 genus 7171 Citrobacter 1 224 0 0 species group 7 1344959 3899 2077148 1 species 262 Citrobacter freundii complex sp. CFNIH4 0 0 Citrobacter freundii 1585 546 1 species 290 Citrobacter freundii complex sp. CFNIH3 species 1 2077147 0 species 57706 1 Citrobacter braakii 605 0 0 606 Citrobacter werkmanii 1 67827 species 0 Citrobacter freundii complex sp. CFNIH2 284 2066049 1 species 0 Citrobacter freundii complex sp. CFNIH9 267 species 2077149 1 67824 1 species Citrobacter farmeri 915 0 0 2644389 2 no rank 549 1702170 1 species Citrobacter sp. FDAARGOS_156 214 0 335 Citrobacter sp. CFNIH10 species 1920110 1 0 0 824 Citrobacter amalonaticus 35703 1 species 0 species 1 545 382 Citrobacter koseri species 67825 1 Citrobacter rodentium 378 0 1 Shigella 585 4 620 genus 19 0 0 no rank 2629414 1 120 0 1 1813821 species Shigella sp. PAMC 28760 120 0 Shigella flexneri 142 623 1 species 1 622 species 304 Shigella dysenteriae 0 genus 401618 2 Candidatus Riesia 756 1 0 3 0 753 Candidatus Riesia pediculicola species 401619 1 3 0 1335483 2 genus 1 Shimwellia 327 species 563 1 324 Shimwellia blattae 0 7 0 1 1392 Lelliottia 4 1330545 genus 0 278 Lelliottia nimipressuralis 69220 1 species 0 61646 1 species Lelliottia amnigena 769 species 1907578 1 Lelliottia jeotgali 338 0 1 14150 Salmonella genus 590 3 0 15 54736 1 species 851 Salmonella bongori 0 28901 1 species Salmonella enterica 13284 0 0 24 Candidatus Ishikawaella 1221 1 genus 409304 2 Candidatus Ishikawaella capsulata 1197 species 168169 1 0 genus 4 83654 1 1169 Leclercia 0 18 83655 1 species Leclercia adecarboxylata 417 0 2627398 2 no rank 734 0 0 352 Leclercia sp. LSNIH3 species 1 1920116 382 Leclercia sp. LSNIH1 species 1 1920114 0 0 17 genus 3 1330546 Pluralibacter 1385 1 0 529 [Enterobacter] lignolyticus 1 1334193 species 0 Pluralibacter gergoviae 839 1 61647 species no rank 22 191675 10986 0 84563 22 clade 10986 0 genus 2 1906660 1 Candidatus Mikella 724 0 4 0 720 Candidatus Mikella endobia species 1778264 1 0 567 1 199891 clade 0 secondary endosymbiont of Trabutina mannipara 567 species 1835721 1 1906661 2 genus 1 517 Candidatus Gullanella 2 0 1070130 1 species Candidatus Gullanella endobia 515 0 4 146507 clade 2006 0 10 0 568987 2 genus Candidatus Hamiltonella 886 1 0 Candidatus Hamiltonella defensa 876 1 138072 species secondary endosymbiont of Ctenarytaina eucalypti 325 species 1 1199245 0 0 species 1 134287 795 secondary endosymbiont of Heteropsylla cubana 5249 clade 7 84564 0 0 59 1 Candidatus Blochmannia 5249 genus 203804 7 675 Candidatus Blochmannia pennsylvanicus species 1 101534 0 0 1134 Candidatus Blochmannia vafer species 251535 1 0 no rank 711328 2 1791 1 1505596 species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 859 0 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 932 species 1505597 1 0 Candidatus Blochmannia floridanus 901 species 1 203907 0 Candidatus Blochmannia chromaiodes 689 species 1 251542 0 0 1 Candidatus Tachikawaea 1471 1 genus 1682492 2 0 1410383 1 species 1470 Candidatus Tachikawaea gelatinosa 1 0 2 1906659 genus 261 Candidatus Hoaglandella 1 0 Candidatus Hoaglandella endobia 260 1 1778263 species 2 1906657 genus 1 Candidatus Doolittlea 191 1 0 0 1 1778262 species Candidatus Doolittlea endobia 190 9 0 2 158483 genus 1276 Cedecea 1 0 158822 1 species Cedecea neteri 1267 414 1 579 genus 0 0 species 1 61648 Kluyvera intermedia 414 0 8 family 1903416 3 461 Budviciaceae 1 2 82984 genus 1 Pragia 453 8 0 Pragia fontium 445 82985 1 species 0 0 833 2 451511 no rank 1 Plesiomonas 833 702 2 genus 27 0 species 703 1 806 Plesiomonas shigelloides 0 36 0 1 Pectobacteriaceae 11861 20 1903410 family 66 0 4249 Pectobacterium 1 6 122277 genus 0 1374 Pectobacterium parmentieri species 1905730 1 species 1 29471 482 Pectobacterium atrosepticum 0 0 species 1 554 Pectobacterium carotovorum 1314 0 445 Pectobacterium polaris 1 2042057 species 0 568 Pectobacterium wasabiae 1 55208 species 10 0 71655 2 genus 1 Brenneria 595 585 Brenneria goodwinii 1 1109412 species 0 1 4258 Dickeya 204037 6 genus 74 0 1778540 1 species Dickeya fangzhongdai 441 0 0 Dickeya zeae 1990 1 204042 species 1089444 1 species Dickeya solani 806 0 0 Dickeya dadantii 482 species 204038 1 465 Dickeya dianthicola 204039 1 species 0 1 2723 Sodalis genus 5 84565 0 73 0 Sodalis praecaptivus 585 species 1239307 1 0 Candidatus Sodalis pierantonius 658 1 1486991 species 954 Sodalis endosymbiont of Henestaris halophilus species 1 1929246 0 63612 1 species Sodalis glossinidius 453 0 Yersiniaceae 37154 1 family 39 1903411 0 75 0 6 genus 929812 2 Gibbsiella 452 1 0 446 Gibbsiella quercinecans 929813 1 species 1 Rahnella 1376 34037 4 genus 10 0 966 no rank 2 2635087 0 0 463 Rahnella sp. Y9602 species 1 741091 Rouxiella sp. ERMR1:05 503 species 1805933 1 0 0 1 34038 species Rahnella aquatilis 400 0 5 Rouxiella 1565532 1 genus 323 0 13966 Serratia 1 16 613 genus 0 4553 no rank 8 2647522 698 Serratia sp. FS14 1327989 1 species 0 0 464 Serratia sp. ATCC 39006 104623 1 species 0 355 Serratia sp. AS12 species 1 768490 1333 Serratia sp. SCBI 1 488142 species 0 species 768493 1 Serratia sp. AS13 355 0 0 species 1 1758196 509 Serratia sp. SSNIH1 Serratia sp. FGI94 400 species 1 671990 0 439 Serratia sp. MYb239 species 1 2033438 0 0 61651 1 species Serratia ficaria 581 0 614 1 species 660 Serratia liquefaciens Serratia marcescens 4397 species 615 1 0 species 47917 1 Serratia fonticola 1608 0 304 Serratia proteamaculans 28151 1 species 0 1041 Serratia plymuthica species 82996 1 0 0 species 1 61652 499 Serratia rubidaea 13 629 genus Yersinia 20899 1 173 0 0 Yersinia kristensenii 591 species 1 28152 Yersinia aldovae 917 1 29483 species 0 525 2653513 1 no rank 0 Yersinia sp. FDAARGOS_228 525 1 1839800 species 0 species 1 29485 602 Yersinia rohdei 0 0 Yersinia enterocolitica 2818 1 630 species species group 1649845 3 11241 0 0 Yersinia pseudotuberculosis 2154 633 1 species 0 3726 Yersinia pestis species 632 1 0 Yersinia similis 5361 367190 1 species 1 631 species 576 Yersinia intermedia 0 1545 Yersinia frederiksenii 29484 1 species 0 0 Yersinia ruckeri 1463 species 1 29486 species 263819 1 Yersinia aleksiciae 448 0 0 4 genus 2 1745211 1 Chania 381 species 1639108 1 Chania multitudinisentens 377 0 0 61 16442 Morganellaceae 1 family 1903414 22 581 2 genus 797 Morganella 1 13 0 0 Morganella morganii 784 species 1 582 9 0 Arsenophonus 1315 1 637 2 genus species 634113 1 Arsenophonus symbiont of Lipoptena fortisetosa 1306 0 26 0 1 Xenorhabdus 3826 626 6 genus 0 1 40576 species 1521 Xenorhabdus bovienii 0 Xenorhabdus poinarii 605 species 40577 1 1 628 species Xenorhabdus nematophila 582 0 1 351671 species Xenorhabdus doucetiae 446 0 0 1 351679 species Xenorhabdus hominickii 646 0 23 genus 583 3 1 Proteus 4593 0 584 1 species Proteus mirabilis 3111 Proteus vulgaris 1459 species 585 1 0 Photorhabdus 2727 1 genus 4 29487 0 26 0 584 Photorhabdus temperata 1 574560 species 0 29488 1 species Photorhabdus luminescens 811 0 1306 Photorhabdus asymbiotica species 1 291112 1 3123 Providencia genus 586 4 0 11 588 1 species Providencia stuartii 1393 0 1097 Providencia rettgeri 587 1 species 0 Providencia alcalifaciens 622 species 126385 1 0 Erwiniaceae 29246 1 family 28 1903409 0 73 genus 82986 2 1 Tatumella 412 0 6 0 species 53336 1 406 Tatumella citrea 0 1275 2100764 2 genus 843 Pantoea calida species 1 665913 0 0 species 1 665914 432 Pantoea gaviniae 214 0 Pantoea 7073 1 11 53335 genus 0 no rank 2630326 3 1530 species 1 1484158 Pantoea sp. PSNIH1 389 0 0 Pantoea sp. At-9b 628 species 592316 1 513 Pantoea sp. PSNIH2 species 1 1484157 0 519 Pantoea stewartii 66269 1 species 0 1050 Candidatus Pantoea carbekii 1 1235990 species 0 0 1076550 1 species Pantoea rwandensis 335 0 816 1654067 1 species group 549 1 species Pantoea agglomerans 816 0 1324 Pantoea vagans 1 470934 species 0 0 431 Pantoea alhagi 1891675 1 species Pantoea ananatis 854 1 553 species 0 1 Buchnera 14095 32199 2 genus 29 0 0 species 1 9 14066 Buchnera aphidicola 1 Erwinia 3484 genus 8 551 0 66 1 79967 species 358 Erwinia pyrifoliae 0 364 no rank 1 2622719 0 0 364 Erwinia sp. Ejp617 1 215689 species 1 1619313 species 432 Erwinia gerundensis 0 447 Erwinia amylovora 552 1 species 0 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 624 species 1 1922217 0 346 Erwinia tasmaniensis 1 338565 species 0 Erwinia billingiae 847 species 182337 1 0 56 genus 2 51228 1 Wigglesworthia 2834 2778 Wigglesworthia glossinidia 51229 1 species 0 0 34 family 14 1903412 30440 Hafniaceae 1 392 Obesumbacterium 1 2 82982 genus 10 0 0 382 Obesumbacterium proteus 82983 1 species genus 8 635 28483 Edwardsiella 1 0 108 1532 2676541 2 no rank 0 0 747 Edwardsiella sp. LADL05-105 1650654 1 species 0 785 Edwardsiella sp. EA181011 species 1 1578828 0 species 1 1263550 Edwardsiella piscicida 581 1 1821960 species 853 Edwardsiella anguillarum 0 0 Edwardsiella ictaluri 712 1 67780 species 0 1 636 species Edwardsiella tarda 24346 species 1 93378 Edwardsiella hoshinae 351 0 genus 568 3 1531 Hafnia 1 0 24 0 374 1 2621980 no rank 1 1848580 species 374 Hafnia sp. CBA7124 0 569 1 species 1133 Hafnia alvei 0 4 135615 order Cardiobacteriales 536 1 2 0 534 Cardiobacteriaceae 1 3 868 family 10 0 0 3 genus 869 2 1 524 Dichelobacter 0 species 1 870 521 Dichelobacter nodosus 12960 no rank 118884 14 0 1 Sedimenticola 882 349742 2 genus 8 0 0 874 Sedimenticola thiotaurini species 1543721 1 0 4426 4 32036 clade Candidatus Ruthia 1477 1 genus 2 1541743 0 7 0 1470 Candidatus Ruthia magnifica 386487 1 species 0 1 410330 species Calyptogena okutanii thioautotrophic gill symbiont 1759 1 113267 species Bathymodiolus septemdierum thioautotrophic gill symbiont 1190 0 38 0 3 655184 genus 1 3783 Candidatus Thioglobus 1223 Candidatus Thioglobus autotrophicus 1705394 1 species 0 0 1427364 1 species Candidatus Thioglobus singularis 2522 0 1 Pseudohongiella 962 1 genus 1524249 2 0 species 1249552 1 961 Pseudohongiella spirulinae 0 9 1 606 Thiolapillus genus 2 1608298 0 Thiolapillus brandeum 597 species 1 1076588 2301 1 198346 clade 0 2301 Candidatus Baumannia cicadellinicola 1 186490 species 0 1 Methylococcales 6412 13 135618 order 22 0 0 33 Methylococcaceae 6390 1 family 12 403 136 0 3813 Methylomonas 1 5 416 genus 0 Methylomonas koyamae 709 702114 1 species 811 no rank 1 2608980 0 0 811 Methylomonas sp. DH-1 1 1727196 species Methylomonas methanica 716 421 1 species 0 species 1 1538553 Methylomonas denitrificans 1441 0 2 413 genus 1 622 Methylococcus 17 0 0 species 1 414 605 Methylococcus capsulatus 0 16 Methylomicrobium 1324 1 genus 2 39773 0 1308 Methylomicrobium alcaliphilum 1 271065 species 1 598 Methylovulum genus 762296 2 0 8 0 1704499 1 species Methylovulum psychrotolerans 590 152738 Pseudomonadales 1 order 72274 129 0 490 562 0 1 102684 Pseudomonadaceae 135621 86 family 0 2525 subfamily 351 3 0 20 genus 352 3 Azotobacter 2525 1 0 1585 Azotobacter chroococcum 1 353 species Azotobacter vinelandii 920 species 1 354 0 1849530 2 genus 1 Oblitimonas 922 5 0 0 species 1 1697053 917 Oblitimonas alkaliphila 0 2352 genus 80 286 98675 Pseudomonas 1 species group 136845 6 13877 0 0 1 70775 species 488 Pseudomonas plecoglossicida 1977 Pseudomonas mosselii 1 78327 species 0 76759 1 species Pseudomonas monteilii 1688 0 803 Pseudomonas oryzihabitans species 1 47885 0 species 47880 1 1001 Pseudomonas fulva 0 1 303 species 7920 Pseudomonas putida 0 1 104087 species 1473 Pseudomonas frederiksbergensis 0 6177 2 136846 species group 0 0 Pseudomonas balearica 698 species 74829 1 0 1 578833 species subgroup 5479 0 5479 Pseudomonas stutzeri 1 316 species 1001 Pseudomonas cerasi species 1 1583341 0 0 Pseudomonas koreensis 1158 species 198620 1 0 4357 species group 136842 2 0 1 296 species Pseudomonas fragi 1069 587753 1 species 3288 Pseudomonas chlororaphis 0 0 17426 136843 9 species group Pseudomonas azotoformans 1786 species 1 47878 0 1 47879 species 514 Pseudomonas corrugata 0 0 380021 1 species Pseudomonas protegens 865 0 Pseudomonas orientalis 471 species 76758 1 1 200450 species 2133 Pseudomonas trivialis 0 1 294 species 10222 Pseudomonas fluorescens 0 species 200451 1 472 Pseudomonas poae 0 0 1 76761 species 435 Pseudomonas veronii 0 Pseudomonas mandelii 528 species 1 75612 312306 1 species Pseudomonas entomophila 586 0 0 1 237609 species Pseudomonas alkylphenolica 488 species 65741 1 793 Pseudomonas knackmussii 0 516 Pseudomonas rhizosphaerae 216142 1 species 0 13544 136841 6 species group 0 0 714 Pseudomonas alcaligenes 43263 1 species 0 Pseudomonas citronellolis 1517 species 1 53408 species 53412 1 830 Pseudomonas resinovorans 0 0 species 1 300 Pseudomonas mendocina 2784 0 287 1 species Pseudomonas aeruginosa 6429 1232139 1 species subgroup 1270 0 Pseudomonas furukawaii 1270 species 1 1149133 0 0 478 Pseudomonas cremoricolorata species 157783 1 0 Pseudomonas silesiensis 1312 species 1853130 1 136849 8 species group 9599 0 46257 1 species 499 Pseudomonas avellanae 0 0 1661 251698 2 species subgroup 744 Pseudomonas amygdali species 47877 1 0 29438 1 species 917 Pseudomonas savastanoi 0 Pseudomonas cichorii 449 species 1 36746 0 0 no rank 1 2775504 534 0 species 1 1206777 534 Pseudomonas sp. Lz4W 1 251701 species Pseudomonas syringae group genomosp. 3 1442 0 species subgroup 1 251695 4598 0 0 317 1 species Pseudomonas syringae 4598 0 1 33069 species 416 Pseudomonas viridiflava 0 799 Pseudomonas psychrotolerans species 237610 1 157782 1 species 1011 Pseudomonas parafulva 0 0 species 219572 1 Pseudomonas antarctica 485 0 species 1 1788301 Pseudomonas versuta 493 30 196821 no rank 18461 0 1 1931241 species 821 Pseudomonas sp. S-6-2 0 0 Pseudomonas sp. VLB120 477 species 69328 1 species 1 1415630 Pseudomonas sp. TKP 1236 0 539 Pseudomonas sp. GR 6-02 species 1659194 1 0 0 1207075 1 species Pseudomonas sp. UW4 466 species 1534110 1 550 Pseudomonas sp. DR 5-09 0 0 713 Pseudomonas sp. LPH1 species 1 1898684 Pseudomonas sp. MYb193 391 1827300 1 species 0 0 424 Pseudomonas sp. JY-Q species 1338689 1 0 1 1930532 species Pseudomonas sp. CC6-YY-74 1047 0 species 1 2049589 449 Pseudomonas sp. HLS-6 Pseudomonas sp. FGI182 411 species 1259844 1 0 0 Pseudomonas sp. M30-35 591 species 1981174 1 0 Pseudomonas sp. MRSN12121 676 species 1 1611770 0 Pseudomonas sp. SWI36 548 species 1 2083052 534 Pseudomonas sp. StFLB209 1 1028989 species 0 Pseudomonas sp. FDAARGOS_380 453 1 2018067 species 0 species 1 2083051 Pseudomonas sp. SWI6 445 0 736 Pseudomonas sp. TCU-HL1 1856685 1 species 0 0 Pseudomonas sp. LG1D9 537 species 1 2083054 0 1 1294143 species Pseudomonas sp. ATCC 13867 759 0 1 2067572 species 774 Pseudomonas sp. NC02 species 1 2069256 500 Pseudomonas sp. XWY-1 0 0 526 Pseudomonas sp. St29 species 1500687 1 0 Pseudomonas sp. SWI44 408 2083053 1 species Pseudomonas sp. URMO17WK12:I11 1091 1 1283291 species 0 species 1500686 1 574 Pseudomonas sp. Os17 0 Pseudomonas sp. PONIH3 606 species 1 1636610 0 0 645 Pseudomonas sp. CCOS 191 species 1649877 1 0 Pseudomonas sp. LH1G9 534 species 2083055 1 0 Pseudomonas lurida 455 species 244566 1 0 1127 Pseudomonas brassicacearum 930166 1 species 0 707 Pseudomonas alcaliphila 1 101564 species 0 94 1 Moraxellaceae 49564 family 468 42 151 0 11 497 genus 9263 Psychrobacter 1 0 753 Psychrobacter cryohalolentis species 330922 1 Psychrobacter arcticus 734 species 1 334543 0 Psychrobacter urativorans 1048 1 45610 species 0 5317 196806 6 no rank 0 1 1699624 species 736 Psychrobacter sp. P11G5 0 species 1 1720344 644 Psychrobacter sp. AntiMn-1 0 1 571800 species Psychrobacter sp. G 702 0 0 822 Psychrobacter sp. P2G3 species 1 1699622 0 920 Psychrobacter sp. DAB_AL43B 1 1028416 species Psychrobacter sp. PRwf-1 1493 1 349106 species 0 0 261164 1 species Psychrobacter alimentarius 1260 25 469 genus 1 Acinetobacter 35873 385 0 species 1 756892 Acinetobacter indicus 577 0 no rank 7 196816 5960 0 1 1636603 species 1296 Acinetobacter sp. ACNIH1 0 0 840 Acinetobacter sp. TGL-Y2 1 1407071 species 2079596 1 species 819 Acinetobacter sp. SWBY1 0 0 species 1 1608473 678 Acinetobacter sp. NCu2D-2 0 604 Acinetobacter sp. LoGeW2-3 species 1808001 1 0 1758189 1 species 859 Acinetobacter sp. ACNIH2 0 864 Acinetobacter sp. TTH0-4 1646498 1 species 0 Acinetobacter oleivorans 1056 1148157 1 species 0 106648 1 species Acinetobacter bereziniae 1205 0 29430 1 species 1175 Acinetobacter haemolyticus 854 Acinetobacter soli 487316 1 species 0 0 species group 909768 5 17235 0 48296 1 species Acinetobacter pittii 6124 0 1 470 species Acinetobacter baumannii 6048 0 Acinetobacter lactucae 1195 1785128 1 species 0 Acinetobacter calcoaceticus 2135 species 471 1 0 Acinetobacter nosocomialis 1733 species 1 106654 988 1 202950 species 0 0 62977 1 strain Acinetobacter sp. ADP1 988 1 108981 species Acinetobacter schindleri 1046 0 0 1 40216 species Acinetobacter radioresistens 771 1 1789224 species 833 Acinetobacter larvae 0 0 species 40214 1 794 Acinetobacter johnsonii 0 Acinetobacter equi 1610 1 1324350 species 1384 Acinetobacter junii species 1 40215 0 5 475 genus 1 4334 Moraxella 39 0 0 480 1 species 1174 Moraxella catarrhalis 0 species 386891 1 830 Moraxella bovoculi species 1 34062 Moraxella osloensis 1827 0 Moraxella ovis 464 29433 1 species 0 0 9 1 690 Nevskiales order 1775403 4 0 1 568386 family Sinobacteraceae 6 family 2 2689614 675 0 1 675 Steroidobacter genus 469322 2 0 14 Steroidobacter denitrificans 661 species 1 465721 0 order 33 135625 22957 Pasteurellales 1 0 8 family 712 32 22949 Pasteurellaceae 1 0 146 3 0 849 Bibersteinia 1 2 476528 genus 0 846 Bibersteinia trehalosi species 1 47735 1 1580 Aggregatibacter genus 416916 3 0 6 0 Aggregatibacter aphrophilus 666 species 1 732 species 714 1 908 Aggregatibacter actinomycetemcomitans 0 0 35 genus 724 6 9453 Haemophilus 1 0 2609962 1 no rank 617 0 617 Haemophilus sp. oral taxon 036 712310 1 species 0 Haemophilus parainfluenzae 604 729 1 species 0 species 249188 1 499 Haemophilus pittmaniae species 730 1 [Haemophilus] ducreyi 2146 0 0 species 727 1 Haemophilus influenzae 5552 1959 Mannheimia 1 75984 4 genus 15 0 0 Mannheimia varigena 780 1 85404 species 701 Mannheimia haemolytica species 75985 1 0 no rank 2645054 1 463 0 463 Mannheimia sp. USDA-ARS-USMARC-1261 species 1 1432056 0 2 0 697331 2 genus 1 Basfia 337 0 335 [Mannheimia] succiniciproducens 1 157673 species 1 1891 Actinobacillus genus 5 713 0 5 0 species 716 1 Actinobacillus suis 452 0 575 Actinobacillus pleuropneumoniae species 1 715 0 339 Actinobacillus succinogenes species 1 67854 0 species 718 1 Actinobacillus equuli 520 genus 2 155493 1 Gallibacterium 703 0 3 0 750 1 species Gallibacterium anatis 700 3 745 genus 1 3819 Pasteurella 23 0 0 877 Pasteurella dagmatis species 754 1 747 1 species Pasteurella multocida 2919 0 1 0 1 Histophilus 1073 214906 2 genus 1072 Histophilus somni species 731 1 0 genus 2 2094023 Glaesserella 1139 1 0 2 0 species 738 1 1137 Glaesserella parasuis 0 22 order 36 72273 1 Thiotrichales 48980 0 45 Francisellaceae 34964 1 family 15 34064 0 3 genus 1869285 2 1 Allofrancisella 1434 1431 Allofrancisella guangzhouensis 594679 1 species 0 0 352 genus 12 262 Francisella 33485 1 Francisella sp. CA97-1460 1957 species 1542390 1 0 0 species 1 573570 2102 Francisella sp. TX077310 0 549298 1 species Francisella halioticida 9920 0 1622 Francisella hispaniensis species 622488 1 3050 2 2610885 no rank 0 Francisella sp. MA067296 1331 1 475375 species 0 0 1719 Francisella sp. FSC1006 1 1547445 species 2530 Francisella noatunensis 1 657445 species 0 1245 Francisella persica species 954 1 0 263 1 species 5420 Francisella tularensis 0 0 species 28110 1 Francisella philomiragia 3881 0 Francisella sp. TX077308 1406 573569 1 species 0 59 10656 Piscirickettsiaceae 1 family 135616 15 5 0 1237 2 genus 2377 Piscirickettsia 1 1 1238 species Piscirickettsia salmonis 2372 0 genus 28884 2 1 Hydrogenovibrio 714 0 5 species 1 39765 709 Hydrogenovibrio crunogenus 0 1 1857 Methylophaga 40222 3 genus 27 0 870 Methylophaga frappieri species 1 754477 0 Methylophaga nitratireducenticrescens 960 species 754476 1 0 4420 Cycloclasticus 1 genus 4 34067 0 72 1707 Cycloclasticus zancles 1329899 1 species 0 0 no rank 2621467 2 2641 0 Cycloclasticus sp. PY97N 1347 1 728003 species 0 385025 1 species 1294 Cycloclasticus sp. P1 0 9 genus 3 933 1 1229 Thiomicrospira Thiomicrospira cyclica 583 species 147268 1 0 1 92245 species 637 Thiomicrospira aerophila 0 0 23 1 Thiotrichaceae 3338 family 5 135617 1743 Thioploca 1 genus 2 40751 0 3 0 40754 1 species 1740 Thioploca ingrica 7 0 1021 2 genus 1572 Beggiatoa 1 species 1 288004 Beggiatoa leptomitoformis 1565 0 0 196 order 135613 52 1 28482 Chromatiales 72276 18 family 9028 Ectothiorhodospiraceae 1 97 0 120 0 4556 Thioalkalivibrio 1 106633 6 genus 0 Thioalkalivibrio paradoxus 824 1 108010 species 724 no rank 1 2621013 0 724 Thioalkalivibrio sp. K90mix species 1 396595 0 Thioalkalivibrio sulfidiphilus 1413 species 1033854 1 0 611 Thioalkalivibrio versutus 1 106634 species 0 0 Thioalkalivibrio nitratireducens 864 186931 1 species 0 9 1 678 Halorhodospira genus 2 85108 1053 1 species Halorhodospira halophila 669 0 0 7 1 Acidihalobacter 1149 genus 2 1765964 0 species 160660 1 1142 Acidihalobacter prosperus genus 2 1051 1 757 Ectothiorhodospira 0 9 0 2684909 1 no rank 748 Ectothiorhodospira sp. BSL-9 748 1 1442136 species 0 0 11 720 Alkalilimnicola 1 genus 133193 2 0 351052 1 species 709 Alkalilimnicola ehrlichii genus 1335745 3 1071 Spiribacter 1 0 14 467 Spiribacter salinus 1335746 1 species 0 590 Spiribacter curvatus species 1335757 1 0 3 0 Woeseiaceae 752 1 3 1738654 family 749 Woeseia 1 genus 1738655 2 0 16 733 Woeseia oceani 1548547 1 species 0 0 16 family 3 449719 1537 Granulosicoccaceae 1 0 47 1 Granulosicoccus 1521 genus 2 437504 0 1 437505 species Granulosicoccus antarcticus 1474 4 0 1676141 3 family 1 1032 Wenzhouxiangellaceae 0 20 1 1028 Wenzhouxiangella genus 1676142 2 0 Wenzhouxiangella marina 1008 species 1 1579979 0 93 13823 Chromatiaceae 1 family 1046 18 10 0 85072 2 genus 851 Allochromatium 1 0 1049 1 species 841 Allochromatium vinosum Nitrosococcus 3517 1 genus 1227 4 0 24 0 species 1229 1 681 Nitrosococcus oceani 0 species 133539 1 Nitrosococcus halophilus 529 2283 Nitrosococcus watsonii species 1 473531 0 873 Thiocystis 1 genus 2 13724 0 4 0 species 73141 1 Thiocystis violascens 869 938 Candidatus Nitrosoglobus 1 genus 1980513 2 0 8 930 Candidatus Nitrosoglobus terrae 1 1630141 species 0 1163 Marichromatium 1 85076 2 genus 14 0 37487 1 species 1149 Marichromatium purpuratum 0 Thioflavicoccus 1115 1 genus 2 156885 0 13 0 80679 1 species Thioflavicoccus mobilis 1102 53392 2 genus Thiodictyon 4452 1 36 0 0 species 1 1166950 Candidatus Thiodictyon syntrophicum 4416 no rank 1 82569 821 0 0 species 1 1978339 821 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 no rank 2 451214 960 0 24 genus 1273155 2 Thiohalobacter 960 1 0 936 Thiohalobacter thiocyanaticus 1 585455 species 0 7 family 4 255526 1154 Halothiobacillaceae 1 28 0 109262 3 genus 1 Halothiobacillus 1147 0 543 2636392 1 no rank 1860122 1 species Halothiobacillus sp. LS2 543 0 927 1 species 576 Halothiobacillus neapolitanus 0 0 9 order 1692040 6 2092 Acidiferrobacterales 1 family 5 1692041 1 Acidiferrobacteraceae 2083 0 31 630 Sulfuricaulis 1 1744881 2 genus 12 0 1 1620215 species Sulfuricaulis limicola 618 0 6 0 1 1422 Sulfurifustis 2 1692042 genus 1 1675686 species Sulfurifustis variabilis 1416 0 2241 1807140 6 class 0 0 47 order 6 225057 Acidithiobacillales 2241 1 41 0 Acidithiobacillaceae 2194 1 5 225058 family 1 2153 Acidithiobacillus 4 119977 genus 30 0 0 species 160808 1 Acidithiobacillus ferrivorans 803 1 33059 species Acidithiobacillus caldus 802 0 0 920 1 species Acidithiobacillus ferrooxidans 518 class 6 580370 1 919 Zetaproteobacteria 0 1 26 0 918 Mariprofundales 1 5 580371 order 0 5 family 4 580372 Mariprofundaceae 892 1 genus 377315 3 887 Mariprofundus 1 0 23 474 Mariprofundus aestuarium 1921086 1 species 0 0 Mariprofundus ferrinatatus 390 species 1921087 1 1 Oligoflexia 5401 class 1553900 13 0 10 7 2024979 order 1 Bacteriovoracales 2762 9 0 Halobacteriovoraceae 1985 1 family 3 1652132 0 4 genus 1652133 2 1 1981 Halobacteriovorax 0 4 0 1977 Halobacteriovorax marinus species 97084 1 Bacteriovoracaceae 768 1 263369 3 family 2 0 0 2 1 Bacteriovorax 766 genus 146784 2 0 764 Bacteriovorax stolpii species 1 960 213481 5 order 1 2629 Bdellovibrionales 6 0 8 0 213483 4 family 2623 Bdellovibrionaceae 1 0 9 genus 3 958 2615 Bdellovibrio 1 453816 1 species Bdellovibrio exovorus 768 0 0 1 959 species Bdellovibrio bacteriovorus 1838 0 phylum 40117 14 4307 203693 14 class Nitrospira 4307 1 27 0 0 45 1 4280 Nitrospirales order 189778 13 12 189779 family 1 Nitrospiraceae 4235 17 0 1 Nitrospira 1521 1234 5 genus 15 0 0 species 1 1715989 280 Candidatus Nitrospira inopinata 0 1 42253 species Nitrospira moscoviensis 531 0 species 1 330214 366 Nitrospira defluvii species 1325564 1 329 Nitrospira japonica 0 10 0 1 Leptospirillum 971 179 4 genus 0 species group 655606 1 390 0 Leptospirillum ferrooxidans 390 1 180 species 0 261386 1 species group 304 178606 1 species Leptospirillum ferriphilum 304 0 267 species group 1 261385 0 1 1660083 species Leptospirillum sp. Group II 'CF-1' 267 0 28261 2 genus 1726 Thermodesulfovibrio 1 5 0 0 Thermodesulfovibrio yellowstonii 1721 1 28262 species 0 200938 5 phylum 539 1 539 Chrysiogenetes class 5 118001 0 2 0 8 1 537 Chrysiogenales order 189769 4 Chrysiogenaceae 529 1 3 189770 family 2 0 0 11 genus 393029 2 527 Desulfurispirillum 1 516 Desulfurispirillum indicum species 1 936456 0 0 508458 12 phylum 1451 1 Synergistia 1451 12 649775 class 9 0 0 17 order 649776 11 1442 Synergistales 1 1 Synergistaceae 1425 10 649777 family 7 0 1 Aminobacterium 314 genus 2 81466 0 5 0 1 81468 species Aminobacterium colombiense 309 0 1 Acetomicrobium 204 1 genus 49894 2 0 species 1 97477 Acetomicrobium mobile 203 Thermanaerovibrio 264 1 genus 81461 2 0 2 0 species 1 81462 Thermanaerovibrio acidaminovorans 262 2 508459 genus 319 Cloacibacillus 1 3 0 species 1 1197717 316 Cloacibacillus porcorum 0 0 1 336260 genus 317 0 species 1 336261 317 Thermovirga lienii 0 5927 phylum 9 200930 68337 9 class 1 5927 Deferribacteres 7 0 5920 Deferribacterales 1 191393 8 order 17 0 25 0 191394 7 family 5903 Deferribacteraceae 1 genus 53572 2 Deferribacter 2232 1 0 7 species 1 197162 2225 Deferribacter desulfuricans 0 0 1955 2351 1 genus species 2352 1 1955 Flexistipes sinusarabici 0 0 17 Denitrovibrio 649 1 genus 117999 2 0 species 1 118000 Denitrovibrio acetiphilus 632 1042 545865 1 genus 0 species 477976 1 Calditerrivibrio nitroreducens 1042 0 1930617 5 phylum 1124 0 class 5 1962850 Calditrichae 1124 1 0 4 Calditrichales 1120 1 order 4 1962852 0 5 0 1 family 3 1962854 Calditrichaceae 1115 1 0 5 genus 187144 2 1114 Caldithrix 1 0 Caldithrix abyssi 1109 1 187145 species 1 name 0 0