members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4682 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 31 27015475 19001 superkingdom 0 263 50065 2157 phylum 1 0 4 Euryarchaeota 211 44762 28890 class 0 6 1 Thermococci 40 183968 4636 order 0 5 1 4630 2258 39 Thermococcales family 1 19 0 4625 2259 Thermococcaceae 38 genus 0 139 83867 1 0 species 971279 139 Palaeococcus pacificus 1 genus 26 0 1 Thermococcus 29 2263 3480 1 Thermococcus paralvinellae 582419 218 0 species species 0 1 Thermococcus piezophilus 1712654 59 species 0 1 Thermococcus chitonophagus 68 54262 1 Thermococcus barossii 112 54077 0 species no rank 0 2627626 637 6 0 species 1 Thermococcus sp. 2319x1 1674923 187 0 species 2016361 70 Thermococcus sp. EXT12c 1 1 Thermococcus sp. 5-4 68 2008440 0 species 246969 88 Thermococcus sp. AM4 1 0 species 0 species 65 122420 Thermococcus sp. P6 1 0 species 1 Thermococcus sp. 4557 1042877 159 1 Thermococcus kodakarensis 311400 130 0 species 342948 92 Thermococcus onnurineus 1 0 species 1 Thermococcus peptonophilus 53952 131 0 species species 0 1 Thermococcus profundus 154 49899 1 Thermococcus litoralis 2265 205 species 0 species 0 110164 119 1 Thermococcus guaymasensis 30 2264 Thermococcus celer 1 0 species Thermococcus eurythermalis 1 1505907 151 species 0 198 277988 Thermococcus thioreducens 1 species 0 195522 138 1 Thermococcus nautili 0 species 0 species Thermococcus barophilus 1 55802 312 1 Thermococcus siculi 72803 137 species 0 44 163003 1 Thermococcus cleftensis 0 species species 0 71997 42 1 Thermococcus gorgonarius Thermococcus gammatolerans 1 187878 160 species 0 70 71998 Thermococcus pacificus 1 0 species Thermococcus radiotolerans 1 187880 78 0 species 0 species 172049 169 Thermococcus sibiricus 1 2260 987 7 genus 0 Pyrococcus yayanosii 1 1008460 149 species 0 species 0 Pyrococcus abyssi 1 29292 29 no rank 0 2629106 228 2 0 species 1 Pyrococcus sp. ST04 184 1183377 44 342949 Pyrococcus sp. NA2 1 0 species Pyrococcus horikoshii 1 175 53953 species 0 239 2261 Pyrococcus furiosus 1 species 0 1609559 167 1 Pyrococcus kukulkanii species 0 0 clade 2283796 2942 15 13 Thermoplasmata 183967 2713 class 9 0 1 1235850 872 4 order 0 1 189 2517203 family 0 189 1291539 1 0 genus 1 Candidatus Methanomethylophilus alvus 1291540 189 0 species 3 Methanomassiliicoccaceae 1577788 683 3 0 1 family 1080709 505 1 genus 0 1406512 505 Candidatus Methanomassiliicoccus intestinalis 1 0 species 1607807 175 1 0 genus 0 species Candidatus Methanoplasma termitum 1 175 1577791 0 order 7 1585 2301 0 family 1 1747776 426 1 1747777 426 genus 0 species 0 1 Cuniculiplasma divulgatum 426 1673428 family 0 90142 609 2 0 genus 2 609 74968 281 97393 Ferroplasma acidarmanus 1 0 species Ferroplasma acidiphilum 1 74969 328 0 species 1919231 260 1 no rank 0 0 species 1 Thermoplasmatales archaeon BRNA1 260 1054217 family 0 2 135 46659 2 2302 135 genus 0 species 0 95 50339 1 Thermoplasma volcanium 0 species 40 2303 Thermoplasma acidophilum 1 0 family 46630 155 1 46631 155 1 0 genus 82076 155 Picrophilus torridus 1 species 0 247 1234666 1 no rank 0 species 0 1495144 247 1 methanogenic archaeon ISO4-H5 0 clade 2 1803510 229 0 genus 2 229 379546 1 2633939 40 0 no rank Aciduliprofundum sp. MAR08-339 1 40 673860 0 species 0 species 379547 189 1 Aciduliprofundum boonei clade 0 2283794 11493 39 class 0 4 1 183939 4896 Methanococci 15 0 order 14 2182 4892 9 Methanocaldococcaceae 196117 1951 1 1 0 family 6 196118 1530 genus 0 0 species 67760 173 Methanocaldococcus infernus 1 0 species Methanocaldococcus vulcanius 1 73913 257 2641196 329 1 0 no rank Methanocaldococcus sp. FS406-22 1 329 644281 species 0 1 Methanocaldococcus fervens 83171 250 0 species Methanocaldococcus bathoardescens 1 1301915 237 species 0 0 species 284 2190 Methanocaldococcus jannaschii 1 genus 5 0 1 420 196119 Methanotorris 2 species 0 1 Methanotorris igneus 2189 415 5 2183 2941 0 family genus 0 2184 2652 4 species 0 1 Methanococcus aeolicus 42879 297 species 0 2187 254 Methanococcus vannielii 1 species 0 2188 289 Methanococcus voltae 1 species 0 39152 1812 Methanococcus maripaludis 1 0 genus 289 155862 1 289 155863 1 Methanothermococcus okinawensis 0 species 6597 183925 24 Methanobacteria 1 0 1 class 23 Methanobacteriales 6596 2158 order 9 0 1 0 family 1 2178 274 0 genus 2179 274 1 0 species 2180 274 Methanothermus fervidus 1 family 1 5 0 Methanobacteriaceae 21 2159 6313 1 0 5 genus 2172 3499 7 Methanobrevibacter Methanobrevibacter ruminantium 1 540 83816 species 0 no rank 0 2 2638681 842 1 Methanobrevibacter sp. YE315 1609968 465 species 0 224719 377 1 Methanobrevibacter sp. AbM4 0 species 1 Methanobrevibacter olleyae 294671 671 species 0 695 230361 1 Methanobrevibacter millerae 0 species 0 species Methanobrevibacter smithii 1 2173 746 8 Methanobacterium 2160 1873 genus 1 0 1 59277 167 Methanobacterium subterraneum 1 0 species Methanobacterium formicicum 1 2162 332 species 0 877455 418 1 Methanobacterium lacus 0 species 0 species 250 118062 Methanobacterium congolense 1 no rank 0 2627676 337 2 0 species 1911685 192 1 Methanobacterium sp. MZ-A1 0 species 1 Methanobacterium sp. MB1 1379702 145 0 species Methanobacterium paludis 1 368 868131 genus 0 145260 418 4 145261 123 1 Methanothermobacter wolfeii species 0 Methanothermobacter marburgensis 1 145263 141 0 species 145262 70 1 Methanothermobacter thermautotrophicus 0 species no rank 0 2631116 84 1 0 species Methanothermobacter sp. CaT2 1 866790 84 1 2316 518 genus 0 0 species 1 Methanosphaera stadtmanae 518 2317 12 Archaeoglobi 183980 1214 1 1 0 class 1 2 0 order Archaeoglobales 11 2231 1213 9 0 1 family 10 Archaeoglobaceae 2232 1211 1 0 3 genus Archaeoglobus 5 2233 748 species 0 1 Archaeoglobus profundus 106 84156 1 Archaeoglobus veneficus 58290 331 species 0 species 0 Archaeoglobus sulfaticallidus 1 1316941 157 1 Archaeoglobus fulgidus 151 2234 species 0 326 190818 2 0 genus 565033 205 Geoglobus acetivorans 1 0 species species 0 1 Geoglobus ahangari 113653 121 2 0 1 genus 2 Ferroglobus 54260 128 0 species Ferroglobus placidus 1 126 54261 0 clade 24473 2290931 104 17171 224756 Methanomicrobia 46 class 0 17 1 1 18 0 order 570264 510 3 Methanocellales 570265 492 2 family 0 2 492 570266 genus 0 0 species Methanocella arvoryzae 1 1175445 319 species 0 1 Methanocella conradii 1175444 173 14 Methanomicrobiales 2191 5048 order 1 13 0 family 0 1 1 196137 564 2 Methanospirillaceae 1 563 2202 0 genus 1 Methanospirillum hungatei 2203 563 0 species family 0 649 88404 1 649 2192 1 genus 0 0 species 83984 649 Methanocorpusculum labreanum 1 Methanomicrobiaceae 7 2194 1310 family 1 0 2 942 45989 4 Methanoculleus genus 1 2 0 0 no rank 306 2619537 1 0 species 1 Methanoculleus sp. MAB1 306 86622 0 species 331 83986 Methanoculleus bourgensis 1 303 2198 1 Methanoculleus marisnigri 0 species genus 0 1 1 2 Methanolacinia 230355 366 54120 365 Methanolacinia petrolearia 1 0 species family 0 3 1198451 2512 0 genus 475087 219 1 219 475088 Methanosphaerula palustris 1 0 species genus 0 2293 395331 2 0 species 358766 363 Methanoregula boonei 1 1930 882104 Methanoregula formicica 1 0 species 11596 94695 Methanosarcinales 28 order 5 0 1 family 0 7 1 23 Methanosarcinaceae 11114 2206 1 0 91 genus 2207 7887 13 Methanosarcina 2209 948 Methanosarcina mazei 1 species 0 species 0 1 Methanosarcina lacustris 170861 397 542 38027 Methanosarcina siciliae 1 species 0 Methanosarcina thermophila 1 2210 538 0 species species 0 1617 2208 1 Methanosarcina barkeri 0 species 1 Methanosarcina horonobensis 418008 668 0 species Methanosarcina vacuolata 1 2215 703 Methanosarcina acetivorans 1 2214 538 0 species no rank 0 1845 2644672 4 0 species 1434099 612 1 Methanosarcina sp. Kolksee 1434103 446 1 Methanosarcina sp. WWM596 0 species Methanosarcina sp. MTP4 1 336 1434100 species 0 1434102 451 1 Methanosarcina sp. WH1 0 species 1 433 2321 0 genus species 0 Methanohalobium evestigatum 1 2322 433 0 genus 2 574 2175 2176 350 1 Methanohalophilus mahii 0 species 0 species 224 2177 Methanohalophilus halophilus 1 genus 0 846 2225 2 species 0 Methanococcoides burtonii 1 29291 465 0 species 381 2226 1 Methanococcoides methylutens 2 Methanolobus 2220 401 1 0 2 genus 0 species 1 Methanolobus psychrophilus 420950 399 0 genus 101191 507 1 101192 507 Methanomethylovorans hollandica 1 species 0 genus 0 459 196136 1 species 0 Methanosalsum zhilinae 1 39669 459 family 0 7 1 477 143067 4 Methanosaetaceae genus 1 1 0 3 Methanothrix 2222 470 Methanosaeta harundinacea 1 151 301375 0 species 1 Methanothrix soehngenii 2223 318 species 0 0 42 1 class Halobacteria 58 7302 183963 order 1 26 0 16 Natrialbales 1644060 2096 family 1 38 0 2070 1644061 15 Natrialbaceae 246 203193 2 Halobiforma 8 0 1 genus 0 species 1 Halobiforma lacisalsi 229731 238 1 158 29287 0 genus 1 Natronococcus occultus 29288 158 species 0 88723 259 Natrinema 3 4 0 1 genus 1 2622230 127 0 no rank 1 Natrinema sp. J7-2 127 406552 0 species 69525 128 1 Natrinema pellirubrum 0 species 1 135 2256 genus 0 species 0 135 44930 Natronobacterium gregoryi 1 genus 0 1269201 134 1 0 no rank 1 2621923 134 0 species 1 Salinarchaeum sp. Harcht-Bsk1 1333523 134 1 0 2 genus 2 Halopiger 387342 248 0 species Halopiger xanaduensis 1 387343 246 0 genus 426 121871 2 1 Haloterrigena turkmenica 62320 229 0 species 588898 197 1 Haloterrigena daqingensis 0 species 1 209 353799 0 genus 0 species 353800 209 1 Halostagnicola larsenii 0 genus 63742 217 1 1 Natrialba magadii 13769 217 0 species order 1 0 20 2363 1644055 Haloferacales 17 1 0 7 family 1963271 804 Halorubraceae 7 296 56688 3 Halorubrum genus 1 8 0 species 0 Halorubrum lacusprofundi 1 2247 144 0 species 29284 144 Halorubrum trapanicum 1 0 genus 1 310 1644057 0 species 310 755307 Salinigranum rubrum 1 1209988 191 Halopenitus 2 1 0 2 genus species 0 Halopenitus persicus 1 1048396 189 family 1 0 10 1331 1644056 Haloferacaceae 8 1 442 293431 0 genus Haloquadratum walsbyi 1 442 293091 species 0 177 60846 2 Halogeometricum genus 1 0 3 0 species 1 Halogeometricum borinquense 60847 174 702 2251 Haloferax 4 genus 0 9 1 294 35746 Haloferax gibbonsii 1 0 species species 0 2246 240 Haloferax volcanii 1 species 0 2252 159 1 Haloferax mediterranei 1 208 2678336 no rank 0 1 halophilic archaeon DL31 756883 208 species 0 order 1 0 45 24 Halobacteriales 2801 2235 family 1 3 0 9 Halobacteriaceae 2236 964 genus 1 11 0 2239 568 4 Halobacterium 1407499 258 Halobacterium hubeiense 1 species 0 2242 155 1 Halobacterium salinarum species 0 144 2668073 1 0 no rank species 0 1 Halobacterium sp. DL1 751944 144 genus 0 1656823 97 1 1604004 97 Halanaeroarchaeum sulfurireducens 1 0 species 1980514 155 1 genus 0 0 species 1 Halodesulfurarchaeum formicicum 1873524 155 Halalkalicoccus 2 332246 141 genus 0 5 1 Halalkalicoccus jeotgali 1 413810 136 0 species family 1 0 24 1792 1963268 Haloarculaceae 14 203135 169 Halomicrobium 2 genus 0 1 1 0 species 1 Halomicrobium mukohataei 57705 168 1073987 145 2 Halorientalis 1 1 0 genus 2648975 144 1 0 no rank species 0 1 Halorientalis sp. IM1011 144 1932360 0 genus 146825 616 2 species 0 146826 408 1 Halorhabdus utahensis 430914 208 1 Halorhabdus tiamatea species 0 genus 0 244 63743 2 species 0 1 Natronomonas moolapensis 108 416273 0 species 1 Natronomonas pharaonis 136 2257 genus 9 0 1 594 2237 Haloarcula 5 0 species 1932004 170 1 Haloarcula taiwanensis species 0 Haloarcula hispanica 1 51589 176 0 species 145 2238 Haloarcula marismortui 1 2624677 94 1 0 no rank Haloarcula sp. CBA1115 1 94 1592728 species 0 74 1783276 1 clade 0 1 1801631 74 0 phylum 74 2490204 1 genus 0 0 species 1920749 74 Candidatus Micrarchaeota archaeon Mia14 1 1783275 5229 51 0 clade 51967 30 2 0 phylum 30 498845 Candidatus Korarchaeum 2 genus 1 0 1 species 0 1 Candidatus Korarchaeum cryptofilum 29 498846 10 651137 1592 0 phylum 31932 716 4 0 order 2 0 1 family 338190 716 4 Nitrosopumilaceae 1 1993653 189 genus 0 1898749 189 Candidatus Nitrosomarinus catalina 1 species 0 2 338191 525 0 genus species 0 Candidatus Nitrosopumilus adriaticus 1 1580092 220 305 1229909 Candidatus Nitrosopumilus sediminis 1 0 species 0 no rank 3 651142 376 1593364 200 1 0 genus Candidatus Nitrosopelagicus brevis 1 200 1410606 0 species 0 genus 2 176 1825023 species 0 1603555 73 1 Candidatus Nitrosotenuis cloacae Candidatus Nitrosotenuis sp. AQ6f 1 1846278 103 0 species 0 class 3 500 1643678 34 1968909 2 order 0 family 0 1 1 Candidatus Nitrosocaldaceae 2 34 1968910 0 genus 1 498374 33 1 Candidatus Nitrosocaldus islandicus 2045011 33 species 0 1 1033996 466 0 order family 0 1 1033997 466 genus 0 466 497726 1 1 Nitrososphaera viennensis 466 1034015 0 species 39 3607 28889 phylum 0 183924 3607 39 Thermoprotei class 1 0 5 0 order 2281 1397 8 1397 118883 8 0 family 1 69655 299 0 genus 0 species 111955 299 Sulfolobus tokodaii 1 2284 596 3 0 genus 1 Sulfolobus islandicus 269 43080 species 0 2641160 214 1 0 no rank 0 species 1 Sulfolobus sp. A20 1891280 214 2285 113 Sulfolobus acidocaldarius 1 0 species 1 141 12914 0 genus 0 species 1 Acidianus hospitalis 563177 141 2100760 209 1 0 genus 0 species 1 Sulfolobus solfataricus 2287 209 0 genus 41980 152 2 1 Metallosphaera cuprina 1006005 103 0 species 0 species 1 Metallosphaera sedula 49 43687 order 0 1098 2266 13 4 0 1 family 6 Thermofilaceae 498 114378 2268 494 Thermofilum 5 genus 1 0 3 0 species 1 Thermofilum carboxyditrophus 170 1483572 species 0 Thermofilum uzonense 1 1550241 78 Thermofilum pendens 1 2269 31 0 species 0 species 212 1365176 Thermofilum adornatus 1 7 Thermoproteaceae 600 2267 0 3 1 family 0 genus 278 164450 2 species 0 61 164451 1 Vulcanisaeta distributa 1 Vulcanisaeta moutnovskia 217 985052 0 species 0 genus 44 2276 1 species 0 2277 44 Pyrobaculum islandicum 1 0 genus 1 135 76886 species 0 Caldivirga maquilingensis 1 76887 135 0 genus 2 2270 140 0 species 70 184117 1 Thermoproteus uzoniensis 1 Thermoproteus tenax 2271 70 species 0 1 0 4 order Desulfurococcales 13 867 114380 family 0 3 340 2307 62 54251 1 genus 0 54252 62 Pyrolobus fumarii 1 0 species 0 genus 54247 33 1 0 species 1 Hyperthermus butylicus 33 54248 2308 245 1 0 genus species 0 1 Pyrodictium delaneyi 1273541 245 523 2272 9 Desulfurococcaceae 0 1 1 family genus 0 2 96 2273 Desulfurococcus mucosus 1 2275 41 species 0 0 species 1 Desulfurococcus amylolyticus 94694 55 1 477695 27 genus 0 0 species 1200300 27 Thermogladius calderae 1 genus 0 2 61 54258 Ignicoccus hospitalis 1 160233 47 0 species 54259 14 Ignicoccus islandicus 1 species 0 0 genus 54253 30 1 species 0 1 Thermosphaera aggregans 30 54254 0 genus 2 308 2279 1 Staphylothermus hellenicus 84599 216 0 species 0 species 2280 92 1 Staphylothermus marinus Acidilobales 4 871006 240 1 0 1 order family 1 0 1 Caldisphaeraceae 2 210 255472 200414 209 1 genus 0 species 0 200415 209 1 Caldisphaera lagunensis 0 family 29 871007 1 1 29 105850 genus 0 species 0 29 242703 Acidilobus saccharovorans 1 0 0 name 1 1 0 71 superkingdom 2 26946409 Bacteria 4387 0 phylum 57723 6312 19 class 4 0 1 617 1562566 Blastocatellia 3 2 Chloracidobacterium 613 458032 genus 0 1 1 458033 612 Chloracidobacterium thermophilum 1 species 0 class 1 0 53 5695 204432 16 Acidobacteriia 100 0 1 order 11 Acidobacteriales 204433 4467 family 0 49 1 Acidobacteriaceae 10 4367 204434 genus 0 815 33973 1 species 0 815 33075 1 Acidobacterium capsulatum 1 0 10 genus Terriglobus 3 392733 1528 species 0 1 Terriglobus saanensis 870903 704 species 0 814 392734 1 Terriglobus roseus Candidatus Koribacter 2 658061 754 1 10 0 genus 744 658062 Candidatus Koribacter versatilis 1 species 0 3 Granulicella 1221 940557 1 0 14 genus Granulicella tundricola 1 592 940615 0 species Granulicella mallensis 1 940614 615 0 species 332160 1175 4 Solibacterales 0 37 1 order family 1 8 0 1138 332161 3 Solibacteraceae 1130 332162 Candidatus Solibacter 2 1 0 1 genus species 0 Candidatus Solibacter usitatus 1 1129 332163 phylum 0 25 200783 6209 1 42 0 class 6209 187857 Aquificae 25 0 20 1 order 1485951 1307 Desulfurobacteriales 4 family 6 0 1 1287 558314 Desulfurobacteriaceae 3 0 genus 1 64159 937 Desulfurobacterium thermolithotrophum 1 64160 937 0 species 1 171868 344 genus 0 228745 344 1 Thermovibrio ammonificans 0 species 4860 32069 20 Aquificales order 8 0 1 1 90150 375 0 no rank 1 375 412592 genus 0 412593 375 Thermosulfidibacter takaii 1 species 0 1 0 6 family 1854 224027 6 Hydrogenothermaceae 454 182899 2 Persephonella genus 1 0 4 0 species 309805 450 1 Persephonella marina 1 10 0 genus 3 Sulfurihydrogenibium 212790 1394 490 309806 Sulfurihydrogenibium azorense 1 species 0 no rank 0 2619248 894 1 0 species 436114 894 1 Sulfurihydrogenibium sp. YO3AOP1 family 1 0 1 Aquificaceae 12 64898 2623 75905 385 3 Thermocrinis genus 1 0 1 Thermocrinis ruber 1 75906 248 species 0 0 species 136 136094 1 Thermocrinis albus 939 181 1 0 genus Hydrogenobacter thermophilus 1 181 940 species 0 genus 78 0 1 6 Hydrogenobaculum 1839 168657 0 no rank 1761 2622382 5 365 547145 Hydrogenobaculum sp. SHO 1 0 species 0 species 365 547143 Hydrogenobaculum sp. 3684 1 species 0 Hydrogenobaculum sp. HO 1 547144 365 0 species 1 Hydrogenobaculum sp. Y04AAS1 301 380749 species 0 547146 365 Hydrogenobaculum sp. SN 1 1 2713 217 0 genus 1 Aquifex aeolicus 63363 217 0 species 0 phylum 3260 200930 8 class 18 0 1 8 Deferribacteres 3260 68337 28 0 1 order 7 Deferribacterales 3242 191393 family 1 0 24 Deferribacteraceae 6 3214 191394 genus 1 3 0 117999 884 2 Denitrovibrio species 0 Denitrovibrio acetiphilus 1 118000 881 545865 794 1 genus 0 477976 794 1 Calditerrivibrio nitroreducens species 0 genus 0 53572 894 1 1 Deferribacter desulfuricans 197162 894 species 0 1 618 2351 genus 0 0 species 1 Flexistipes sinusarabici 618 2352 0 phylum 1723 200940 9 class 0 2 1 Thermodesulfobacteria 9 67799 1723 Thermodesulfobacteriales 8 188710 1721 0 6 1 order 188711 1715 Thermodesulfobacteriaceae 7 family 0 6 1 3 Thermodesulfobacterium 1740 1057 1 0 1 genus species 0 580 1295609 Thermodesulfobacterium geofontis 1 1741 476 Thermodesulfobacterium commune 1 0 species 1 216 444090 0 genus 1 Caldimicrobium thiodismutans 1653476 216 0 species genus 3 0 1 Thermodesulfatator 2 241192 436 433 171695 1 Thermodesulfatator indicus species 0 clade 0 482 2498710 4 0 phylum 4 482 67814 693071 482 4 Caldisericia 0 5 1 class 693072 477 3 0 order family 0 7 1 Caldisericaceae 3 477 693073 2 Caldisericum 693074 470 1 2 0 genus 0 species Caldisericum exile 1 468 693075 0 phylum 25 43368 32066 25 Fusobacteriia 203490 43368 class 22 0 1 1 0 58 order Fusobacteriales 24 43346 203491 Fusobacteriaceae 12 203492 29893 family 1 87 0 1754 167639 2 Ilyobacter genus 0 5 1 0 species 167642 1749 Ilyobacter polytropus 1 genus 164 0 1 Fusobacterium 9 28052 848 0 species 849 1310 1 Fusobacterium gonidiaformans species 0 7912 851 1 Fusobacterium nucleatum species 0 1 Fusobacterium necrophorum 859 1175 1 Fusobacterium periodonticum 860 4325 0 species 0 species Fusobacterium hwasookii 1 1583098 2245 0 species 861 2544 Fusobacterium ulcerans 1 species 0 Fusobacterium varium 1 856 5878 species 0 2499 850 Fusobacterium mortiferum 1 11 Leptotrichiaceae 13395 1129771 family 0 15 1 0 genus 1 32068 2954 Sebaldella termitidis 1 2954 826 0 species 2 0 1 genus 2 Streptobacillus 34104 1275 1273 34105 Streptobacillus moniliformis 1 0 species Leptotrichia 5 7786 32067 genus 15 0 1 Leptotrichia buccalis 1 40542 2028 species 0 5743 2633022 3 0 no rank species 0 1785996 1720 Leptotrichia sp. oral taxon 847 1 2109 712357 Leptotrichia sp. oral taxon 212 1 species 0 712368 1914 Leptotrichia sp. oral taxon 498 1 0 species genus 7 0 1 168808 1365 Sneathia 2 187101 1358 Sneathia amnii 1 0 species 89 29469 1783257 0 clade 0 phylum 256845 5401 3 20 0 1 class 1313211 5401 Lentisphaeria 3 1 0 1706 order 278082 5381 2 Victivallales no rank 0 1674876 3675 1 Victivallales bacterium CCUG 44730 1 3675 2094242 species 0 24 2819 204428 phylum 0 2819 204429 Chlamydiia 24 class 24 0 1 1237 1963360 Parachlamydiales 9 order 1 1 0 240 92712 Simkaniaceae 2 family 0 5 1 34093 235 1 genus 0 species 0 Simkania negevensis 1 83561 235 Parachlamydiaceae 3 843 92713 0 4 1 family 0 genus 1 83551 494 Parachlamydia acanthamoebae 1 494 83552 species 0 genus 0 1 345 282132 345 389348 Candidatus Protochlamydia naegleriophila 1 species 0 92714 153 3 Waddliaceae 1 0 3 family 0 8 1 genus 2 Waddlia 71666 150 0 species 71667 142 Waddlia chondrophila 1 Chlamydiales 14 51291 1558 3 0 1 order family 0 5 1 Chlamydiaceae 13 809 1555 no rank 0 12 1550 1113537 12 Chlamydia 1550 810 11 0 1 genus species 0 83559 91 Chlamydia suis 1 Chlamydia muridarum 1 169 83560 species 0 1457141 118 Chlamydia avium 1 species 0 1 Chlamydia trachomatis 813 216 0 species 1 Chlamydia pecorum 242 85991 species 0 1 Chlamydia gallinacea 1457153 139 species 0 species 0 83558 106 Chlamydia pneumoniae 1 1 Chlamydia psittaci 83554 132 species 0 0 species 1 Chlamydia caviae 70 83557 83556 163 Chlamydia felis 1 0 species species 0 1 Chlamydia abortus 93 83555 phylum 0 203682 10000 34 class 1 0 55 Planctomycetia 24 203683 6986 2691356 1662 7 0 order 1662 1763524 Isosphaeraceae 7 family 9 0 1 466152 593 Singulisphaera 2 1 0 6 genus 466153 587 Singulisphaera acidiphila 1 0 species genus 1 0 10 1763521 735 2 Paludisphaera 0 species Paludisphaera borealis 1 1387353 725 2 0 1 genus 2 Isosphaera 127 325 128 323 1 Isosphaera pallida 0 species 2691354 1302 4 order 0 649 2691357 3 0 family genus 1 0 1 364 123 Pirellula 2 Pirellula staleyi 1 363 125 0 species 1 285 265488 genus 0 1 Rhodopirellula baltica 265606 285 0 species 2691358 653 1 0 family 0 genus 1676125 653 1 653 1331910 1 Thermogutta terrifontis species 0 3 2691355 467 0 order family 1 3 0 1914233 467 3 Gemmataceae 1 7 0 genus 113 464 Gemmata 2 0 no rank 2622970 457 1 457 1630693 1 Gemmata sp. SH-PL17 0 species 1 0 85 order 112 3500 9 Planctomycetales 8 Planctomycetaceae 3415 126 25 0 1 family genus 0 42 1 821 1936111 Fuerstia 2 1891926 779 Fuerstia marisgermanicae 1 species 0 Planctomyces 3 1479 118 7 0 1 genus no rank 0 2648843 1472 2 species 0 1636152 809 Planctomyces sp. SH-PL62 1 species 0 1 Planctomyces sp. SH-PL14 1632864 663 genus 0 1 392 1649490 species 0 119 392 1 Rubinisphaera brasiliensis 698 1649480 1 0 genus 0 species 120 698 Planctopirus limnophila 1 class 0 3 654 2517206 3 Candidatus Brocadiales 654 1127829 order 1 0 4 family 0 1127830 650 2 2 Candidatus Kuenenia 380738 650 genus 1 2 0 174633 648 Candidatus Kuenenia stuttgartiensis 1 species 0 0 5 1 class 666505 2360 7 Phycisphaerae order 1 19 0 666506 559 4 Phycisphaerales Phycisphaeraceae 3 540 666507 1 0 1 family 539 666508 2 Phycisphaera 1 5 0 genus species 0 534 547188 1 Phycisphaera mikurensis 1796 2483366 2 0 order family 0 1796 2483367 2 0 genus 2 1796 2483368 1941349 751 Phycisphaerae bacterium ST-PulAB-D4 1 species 0 Phycisphaerae bacterium L21-RPul-D3 1 1940790 1045 0 species 134625 727 4 phylum 0 1921781 727 4 class 0 1921782 727 Kiritimatiellales 4 order 27 0 1 700 1921783 Kiritimatiellaceae 3 family 1 0 3 27 0 1 genus 2 Kiritimatiella 697 1921784 species 0 1 Kiritimatiella glycovorans 670 1307763 10522 74201 24 Verrucomicrobia phylum 0 3 1 11 Opitutae 2890 414999 class 0 38 1 3 Puniceicoccales 415001 434 order 1 0 2 432 415002 Puniceicoccaceae 2 family 1 1 0 1 431 442430 0 genus Coraliomargarita akajimensis 1 431 395922 species 0 7 Opitutales 2418 415000 1 0 38 order 1 0 64 family 134623 2380 Opitutaceae 6 no rank 0 1 278955 895 1 Opitutaceae bacterium TAV5 794903 895 species 0 1961799 723 2 Lacunisphaera 1 0 36 genus 1838286 687 1 Lacunisphaera limnophila 0 species 2 Opitutus 698 178440 genus 1 0 7 0 species 107709 691 1 Opitutus terrae 417295 1300 2 no rank 0 Verrucomicrobia bacterium IMCC26134 1 1637999 617 species 0 0 species 2026799 683 Verrucomicrobia bacterium 1 2 172 134549 class 0 134550 172 2 Candidatus Xiphinematobacter 0 11 1 genus no rank 0 1 161 2648876 species 0 1704307 161 1 Candidatus Xiphinematobacter sp. Idaho Grape 1955630 541 2 class 0 0 order 717963 541 2 0 family 2 717964 541 genus 0 2 511745 541 1 Methylacidiphilum fumariolicum 591154 295 species 0 species 0 246 511746 Methylacidiphilum infernorum 1 class 0 6 1 5616 203494 6 Verrucomicrobiae 1 0 1 order 48461 5610 Verrucomicrobiales 5 4 Akkermansiaceae 1647988 5609 family 14 0 1 0 52 1 genus 239934 5595 Akkermansia 3 1679444 759 Akkermansia glycaniphila 1 species 0 0 species 1 Akkermansia muciniphila 239935 4784 phylum 0 1192 200938 4 Chrysiogenetes 4 1192 118001 1 7 0 class order 1 20 0 189769 1185 3 Chrysiogenales family 11 0 1 1165 189770 Chrysiogenaceae 2 1 393029 1154 0 genus 0 species Desulfurispirillum indicum 1 1154 936456 0 phylum 56 203691 59697 Spirochaetia 56 203692 59697 class 0 102 1 1144 0 1 order 41 Spirochaetales 136 46029 415 0 1 family 23 Spirochaetaceae 137 40368 genus 3 0 1 146 1722 3 Spirochaeta 46355 793 1 Spirochaeta africana species 0 species 0 Spirochaeta thermophila 1 154 926 genus 1 0 3 399320 3816 4 Sphaerochaeta 0 species 1 Sphaerochaeta pleomorpha 1131707 1429 0 species 1131703 1388 1 Sphaerochaeta globosa species 0 273376 996 1 Sphaerochaeta coccoides 1911556 2778 2 Sediminispirochaeta genus 0 15 1 Sediminispirochaeta smaragdinae 1 55206 2763 species 0 30527 157 12 Treponema genus 1 2508 0 167 10602 1 Treponema succinifaciens species 0 Treponema pedis 1 409322 719 0 species 158 2468 1 Treponema denticola species 0 88058 1400 1 Treponema primitia species 0 81028 1642 Treponema brennaborense 1 0 species species 0 1354 150829 Treponema azotonutricium 1 Treponema caldarium 1 215591 1049 0 species 160 225 Treponema pallidum 1 0 species 1 Treponema putidum 221027 3929 species 0 1 2638727 4415 0 no rank 1 Treponema sp. OMZ 838 1539298 4415 species 0 0 species Treponema paraluiscuniculi 1 53435 216 1616789 1110 1 0 genus species 0 1307761 1110 1 Salinispira pacifica family 4 0 1 17 Borreliaceae 4517 1643685 138 2424 8 Borrelia genus 1 27 0 0 species 181 143 Borrelia anserina 1 1 Borrelia miyamotoi 606 47466 0 species 40834 342 Borrelia duttonii 1 0 species species 0 140 349 1 Borrelia hermsii species 0 274 142 Borrelia turicatae 1 1 Borrelia parkeri 141 290 species 0 44449 355 Borrelia recurrentis 1 species 0 genus 1 50 0 2089 64895 Borreliella 8 0 species Borreliella afzelii 1 252 29518 Borreliella bavariensis 1 339 664662 species 0 62088 238 1 Borreliella valaisiana 0 species 0 species Borreliella burgdorferi 1 139 263 species 0 Borrelia mayonii 1 1674146 227 Borreliella bissettii 1 246 64897 species 0 species 0 Borreliella garinii 1 29519 474 1643688 4175 7 order 0 0 family 7 4175 170 1 16 0 genus 171 3744 6 Leptospira 1 Leptospira biflexa 356 172 0 species species 0 174 863 Leptospira borgpetersenii 1 Leptospira interrogans 1 173 1117 0 species 28452 721 Leptospira alstonii 1 0 species species 0 1 Leptospira santarosai 28183 671 338321 431 1 genus 0 0 species Turneriella parva 1 431 29510 0 5 1 order 9391 1643686 7 Brachyspirales 9386 143786 Brachyspiraceae 6 family 0 528 1 genus 1 442 0 Brachyspira 5 29521 8858 Brachyspira hyodysenteriae 1 159 2073 0 species species 0 1 Brachyspira intermedia 84377 1711 0 species 1 Brachyspira pilosicoli 52584 3310 species 0 1 Brachyspira murdochii 84378 1322 phylum 0 6 1 2840 74152 Elusimicrobia 9 1 99260 636 no rank 0 0 species uncultured Termite group 1 bacterium 1 167965 636 1727 447830 5 class 0 order 1 0 2 1783344 1727 5 Endomicrobiales family 1 9 0 1783343 1725 4 Endomicrobiaceae 1 0 1 genus Endomicrobium 3 1716 1408194 0 species 632 1408204 1 Candidatus Endomicrobium trichonymphae species 0 1083 1408281 1 Endomicrobium proavitum class 0 641853 471 2 order 0 641854 471 2 471 641876 2 0 family 0 1 1 genus 471 423604 Elusimicrobium 2 470 423605 Elusimicrobium minutum 1 0 species phylum 0 4 1292 1930617 class 0 4 1292 1962850 1292 1962852 4 Calditrichales order 1 0 6 2 0 1 family 3 Calditrichaceae 1962854 1286 genus 1 0 5 2 Caldithrix 187144 1284 187145 1279 1 Caldithrix abyssi 0 species phylum 0 200918 15192 43 43 Thermotogae 15192 188708 1 16 0 class order 0 1 1 6 Kosmotogales 1643946 1993 family 1 16 0 Kosmotogaceae 5 1643948 1992 1 0 9 genus 809 1184396 2 Mesotoga 1 Mesotoga prima 1184387 800 0 species genus 0 1167 651456 2 species 0 651457 500 Kosmotoga olearia 1 667 1330330 Kosmotoga pacifica 1 0 species order 1 0 3 8 Petrotogales 1643947 3715 3712 1643949 7 0 family 2 Petrotoga 28236 679 genus 0 5 1 species 0 Petrotoga mobilis 1 674 69499 Defluviitoga 2 1511648 518 0 1 1 genus 0 species Defluviitoga tunisiensis 1 1006576 517 Marinitoga 3 160798 2515 genus 0 14 1 1273 2640159 1 0 no rank 0 species 1 Marinitoga sp. 1137 1545835 1273 1 Marinitoga piezophila 1228 149715 0 species order 1 0 6 9468 2419 Thermotogales 28 13 0 1 family 5605 188709 17 Thermotogaceae Thermotoga 11 2335 3871 genus 94 0 1 species 0 1508420 534 1 Thermotoga profunda Thermotoga neapolitana 1 692 2337 0 species 1 Thermotoga petrophila 93929 301 0 species species 0 2336 260 Thermotoga maritima 1 species 0 1508419 220 Thermotoga caldifontis 1 0 no rank 2631113 1417 4 624 126738 1 Thermotoga sp. RQ7 species 0 0 species 1 Thermotoga sp. RQ2 266 126740 species 0 1 Thermotoga sp. 2812B 244 1157948 1157947 283 1 Thermotoga sp. Cell2 0 species Thermotoga naphthophila 1 93930 353 species 0 1643951 1721 Pseudothermotoga 5 0 15 1 genus 1 Pseudothermotoga lettingae 177758 441 0 species species 0 57487 329 1 Pseudothermotoga hypogea 0 species 38322 426 1 Pseudothermotoga elfii 0 species Pseudothermotoga thermarum 1 119394 510 10 Fervidobacteriaceae 3857 1643950 1 0 21 family 5 Thermosipho 2144 2420 1 0 5 genus 0 no rank 2 966 2676525 474 1437364 Thermosipho sp. 1070 1 0 species 492 1462747 Thermosipho sp. 1063 1 0 species 2421 684 1 Thermosipho africanus 0 species species 0 1 Thermosipho melanesiensis 46541 489 2422 1692 4 Fervidobacterium 0 3 1 genus species 0 2424 622 1 Fervidobacterium nodosum 0 species 93466 681 Fervidobacterium pennivorans 1 386 2423 Fervidobacterium islandicum 1 species 0 0 no rank 529 2323 2 1783234 529 2 0 clade 173 95818 1 phylum 0 1 1895827 173 0 no rank 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 173 0 species 1 95901 356 0 clade 1 356 2497643 0 class 356 2497644 1 0 order 356 2497645 1 family 0 genus 0 1551504 356 1 0 species 1 Candidatus Babela massiliensis 673862 356 1703 1783272 18810369 0 clade 101 Tenericutes 544448 46887 phylum 1 9 0 class 1 44 0 Mollicutes 97 31969 41768 44 Mycoplasmatales 14508 2085 1 25 0 order 1 70 0 family 2092 14483 Mycoplasmataceae 43 0 genus 12 2767358 4447 1 Mycoplasma bovirhinis 29553 257 0 species species 0 231 2113 Mycoplasma californicum 1 species 0 Mycoplasma bovigenitalium 1 276 2112 species 0 493 2110 Mycoplasma agalactiae 1 0 species 287 2094 1 Mycoplasma arginini Mycoplasma pullorum 1 350 48003 species 0 29555 493 Mycoplasma canis 1 species 0 2109 151 1 Mycoplasma synoviae 0 species 171284 435 Mycoplasma cynos 1 0 species 0 species 1 Mycoplasma bovis 675 28903 1 Mycoplasma fermentans 2115 430 0 species 369 2107 Mycoplasma pulmonis 1 0 species 1 4 0 genus 2129 648 3 Ureaplasma 393 2130 Ureaplasma urealyticum 1 0 species Ureaplasma parvum 1 134821 251 0 species 27 Mycoplasma 2093 9318 0 147 1 genus 0 species 1 Mycoplasma wenyonii 65123 81 Mycoplasma ovis 1 171632 79 0 species species 0 45362 362 Mycoplasma bovoculi 1 103 2104 Mycoplasma pneumoniae 1 0 species 1 2683645 519 no rank 0 1749074 519 1 Mycoplasma sp. (ex Biomphalaria glabrata) 0 species 241 2100 Mycoplasma hyorhinis 1 species 0 189 2099 Mycoplasma hyopneumoniae 1 species 0 species 0 1 Mycoplasma dispar 254 86660 0 species 1 Mycoplasma genitalium 131 2097 Mycoplasma yeatsii 1 51365 473 0 species Mycoplasma arthritidis 1 2111 242 0 species 406 29554 Mycoplasma canadense 1 species 0 0 species 1 Mycoplasma crocodyli 333 50052 Mycoplasma flocculare 1 2128 428 0 species species 0 2098 889 Mycoplasma hominis 1 species 0 285 2096 Mycoplasma gallisepticum 1 0 species 35 29501 Mycoplasma haemofelis 1 0 species 1 Mycoplasma putrefaciens 396 2123 28227 570 Mycoplasma penetrans 1 0 species Mycoplasma mobile 1 2118 336 species 0 0 species Mycoplasma haemocanis 1 136241 50 984991 140 1 Mycoplasma parvum 0 species 2514 656088 3 0 species group Mycoplasma leachii 1 2105 723 0 species species 0 Mycoplasma mycoides 1 1032 2102 species 0 2095 759 1 Mycoplasma capricolum 0 species 1 Mycoplasma suis 57372 115 15 0 1 order 39 Entomoplasmatales 20379 186328 family 38 0 1 33925 6429 Entomoplasmataceae 14 Mesoplasma 8 4434 46239 0 78 1 genus species 0 1 Mesoplasma syrphidae 225999 1034 0 species 268 219745 1 Mesoplasma tabanidae 138853 1042 Mesoplasma lactucae 1 species 0 0 species 795 2151 Mesoplasma florum 1 455 216427 1 Mesoplasma chauliocola species 0 362 324078 1 Mesoplasma coleopterae 0 species Mesoplasma entomophilum 1 2149 400 0 species genus 1 22 0 Entomoplasma 5 1957 46238 214888 587 1 Entomoplasma luminosum species 0 species 0 Entomoplasma somnilux 1 215578 393 1 Entomoplasma freundtii 74700 297 species 0 0 species 1 Entomoplasma melaleucae 81459 658 family 20 0 1 13935 2131 24 Spiroplasmataceae genus 0 328 1 Spiroplasma 23 13915 2132 species 0 1 Spiroplasma taiwanense 2145 532 species 0 216945 492 1 Spiroplasma syrphidicola species 0 Spiroplasma litorale 1 946 216942 686 47834 1 Spiroplasma kunkelii species 0 2 2637901 1596 no rank 0 0 species 798 1914410 Spiroplasma sp. NBRC 100390 1 798 1898044 Spiroplasma sp. TU-14 1 species 0 424 2137 Spiroplasma apis 1 0 species species 0 660 216944 1 Spiroplasma sabaudiense 560 216933 1 Spiroplasma chrysopicola 0 species 2133 674 Spiroplasma citri 1 species 0 1 Spiroplasma clarkii 470 2139 species 0 species 0 1 Spiroplasma eriocheiris 315358 685 species 0 216936 605 1 Spiroplasma diminutum 1 Spiroplasma turonicum 524 216946 species 0 species 0 1 Spiroplasma mirum 2144 538 216935 864 1 Spiroplasma culicicola 0 species 1114980 541 Spiroplasma atrichopogonis 1 species 0 1 Spiroplasma floricola 600 216937 0 species 1 Spiroplasma helicoides 216938 560 0 species Spiroplasma monobiae 1 459 2136 species 0 0 species 1 Spiroplasma corruscae 216934 495 species 0 Spiroplasma cantharicola 1 676 362837 13 Acholeplasmatales 186329 6837 0 14 1 order 1 26 0 family 2146 6823 Acholeplasmataceae 12 6 Candidatus Phytoplasma 33926 1585 1 0 53 genus species group 0 3 889 85620 0 species Maize bushy stunt phytoplasma 1 202462 305 species 0 100379 328 1 Onion yellows phytoplasma 229545 256 1 Aster yellows witches'-broom phytoplasma species 0 0 species group 1 380 85632 59748 380 Candidatus Phytoplasma australiense 1 species 0 species group 0 1 263 85630 37692 263 1 Candidatus Phytoplasma mali species 0 1 198 0 genus 5 Acholeplasma 2147 5212 1 Acholeplasma brassicae 61635 1169 species 0 1 Acholeplasma laidlawii 2148 1097 species 0 1 Acholeplasma palmae 1168 38986 species 0 1 Acholeplasma oculi 35623 1580 0 species 0 no rank 3908 713063 2 1911683 1924 1 Tenericutes bacterium MZ-XQ species 0 species 0 1911684 1984 Tenericutes bacterium MO-XQ 1 0 no rank 2799557 1202 1 0 genus 1912503 1202 1 0 no rank 2624196 1202 1 species 0 1 Candidatus Izimaplasma sp. HR1 1541959 1202 143 1798711 57875 0 clade 143 Cyanobacteria 1117 57875 phylum 14 0 1 7 Pleurocapsales 1958 52604 1 5 0 order family 3 0 1 Hyellaceae 2 377 1890500 genus 0 374 44474 1 1 Pleurocapsa minor 54308 374 0 species family 1 0 6 1890498 1576 Dermocarpellaceae 4 genus 0 21 1 102115 1570 3 Stanieria 0 no rank 1 2642663 745 1807358 745 Stanieria sp. NIES-3757 1 species 0 1 Stanieria cyanosphaera 102116 804 species 0 class 1 5 0 Gloeobacteria 6 307596 1325 Gloeobacterales 5 1320 307595 1 12 0 order 1308 1890422 Gloeobacteraceae 4 family 9 0 1 33071 1299 Gloeobacter 3 genus 16 0 1 1416614 610 Gloeobacter kilaueensis 1 0 species species 0 1 Gloeobacter violaceus 33072 673 order 1 0 26 32 Nostocales 15391 1161 8 2661849 4665 family 0 4665 1186 8 Calothrix 0 26 1 genus 0 no rank 6 4021 2619626 Calothrix sp. NIES-4101 1 2005461 989 0 species species 0 99598 358 1 Calothrix sp. PCC 7507 1954171 506 Calothrix sp. NIES-2098 1 species 0 0 species 2005462 449 Calothrix sp. NIES-3974 1 species 0 Calothrix sp. NIES-4071 1 1110 2005469 species 0 1 Calothrix sp. 336/3 609 1337936 species 0 Calothrix parietina 1 32054 618 family 0 8 1 1185 1016 Rivulariaceae 3 genus 1 0 5 373984 1008 2 Rivularia 2676603 1003 1 0 no rank 1 Rivularia sp. PCC 7116 373994 1003 0 species 1 1219117 719 0 no rank 0 species Nostocales cyanobacterium HT-58-2 1 1940762 719 8239 1162 18 Nostocaceae family 1 0 72 genus 0 85 1 1177 5330 10 Nostoc 272131 371 1 Nostoc punctiforme species 0 0 species 694 1306274 Nostoc flagelliforme 1 0 no rank 4180 2593658 7 species 0 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 528 species 0 1 Nostoc sp. PCC 7524 633 28072 1 Nostoc sp. PCC 7107 317936 657 species 0 1 Nostoc sp. PCC 7120 103690 729 0 species species 0 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1 434 1618022 654 1751286 Nostoc sp. NIES-3756 1 species 0 545 1869241 Nostoc sp. CENA543 1 0 species 264688 937 3 Trichormus 1 1 0 genus 1 Trichormus variabilis 264691 493 0 species species 0 443 1164 1 Trichormus azollae genus 1 0 2 1163 1900 4 Anabaena 2 2619674 1171 no rank 0 633 1647413 Anabaena sp. WA102 1 species 0 46234 538 1 Anabaena sp. 90 0 species 1165 727 1 Anabaena cylindrica 0 species 1 1892263 726 0 family 0 genus 726 1190 1 726 494603 1 no rank 0 Fischerella sp. NIES-3754 1 1752063 726 0 species order 162 0 1 53 Synechococcales 23472 1890424 0 family 2303730 659 1 genus 0 1 659 170610 1209493 659 Halomicronema hongdechloris 1 0 species 6 Leptolyngbyaceae 2938 1890438 family 18 0 1 genus 1 0 12 2920 47251 5 Leptolyngbya 1 Leptolyngbya boryana 1184 815 0 species 2093 2650499 3 0 no rank 950 1080068 1 Leptolyngbya sp. O-77 0 species 111781 648 1 Leptolyngbya sp. PCC 7376 0 species species 0 495 1752064 Leptolyngbya sp. NIES-3755 1 1890436 657 2 family 0 12 0 1 genus 2 Pseudanabaena 1152 657 1 645 2593292 no rank 0 species 0 645 82654 1 Pseudanabaena sp. PCC 7367 1890426 13942 33 Synechococcaceae 1 0 63 family 10973 1129 Synechococcus 26 genus 0 176 1 no rank 0 9455 2626047 23 0 species Synechococcus sp. WH 7803 1 391 32051 374982 182 Synechococcus sp. PCC 73109 1 0 species Synechococcus sp. JA-3-3Ab 1 321327 830 0 species 1 Synechococcus sp. PCC 8807 302 195248 0 species 32049 418 Synechococcus sp. PCC 7002 1 0 species 1 Synechococcus sp. CC9311 175 64471 0 species 0 species 321332 589 Synechococcus sp. JA-2-3B'a(2-13) 1 Synechococcus sp. WH 8109 1 377 166314 0 species 0 species 1 Synechococcus sp. KORDI-52 585425 339 1 Synechococcus sp. PCC 7117 195498 254 0 species 1 Synechococcus sp. PCC 6312 195253 355 species 0 0 species 1 Synechococcus sp. WH 8103 347 29410 374981 250 Synechococcus sp. PCC 7003 1 0 species 110662 434 1 Synechococcus sp. CC9605 species 0 1 Synechococcus sp. PCC 7502 1173263 315 0 species species 0 1 Synechococcus sp. KORDI-100 1280380 232 species 0 Synechococcus sp. NIES-970 1 330 1827144 1 Synechococcus sp. UTEX 2973 924 1350461 species 0 316279 267 1 Synechococcus sp. CC9902 0 species 0 species 585423 500 Synechococcus sp. KORDI-49 1 477 316278 1 Synechococcus sp. RCC307 species 0 1916956 830 Synechococcus sp. SynAce01 1 0 species Synechococcus sp. WH 8102 1 337 84588 species 0 33070 411 1 Synechococcus lividus species 0 species 0 32046 931 Synechococcus elongatus 1 1 1 0 genus Dactylococcopsis 2 13034 384 0 species 1 Dactylococcopsis salina 292566 383 0 genus 146785 313 1 species 0 Thermosynechococcus elongatus 1 313 146786 2209 167375 3 Cyanobium genus 1 0 29 0 species 1 Cyanobium gracile 59930 1069 no rank 0 1 1111 2627006 Cyanobium sp. NIES-981 1 1851505 1111 0 species Prochloraceae 5 1213 3337 family 0 1 1 genus 7 0 1 1218 3336 Prochlorococcus 4 0 no rank 605 2627481 2 species 0 Prochlorococcus sp. MIT 0801 1 197 1501269 1 Prochlorococcus sp. MIT 0604 1501268 408 0 species 1219 2724 Prochlorococcus marinus 1 species 0 0 family 1890429 485 1 genus 0 1 485 155977 Acaryochloris marina 1 155978 485 species 0 family 0 1890428 1292 4 1142 1292 Synechocystis 4 1 37 0 genus 3 1255 2640012 no rank 0 1148 417 Synechocystis sp. PCC 6803 1 species 0 species 0 Synechocystis sp. PCC 6714 1 1147 421 0 species 1 Synechocystis sp. IPPAS B-1465 2116702 417 0 no rank 339 1983111 1 cyanobacterium endosymbiont of Epithemia turgida 1 718217 339 species 0 1890505 683 3 0 order family 0 4 1 1890528 683 3 Chroococcidiopsidaceae 54298 679 Chroococcidiopsis 2 genus 0 22 1 0 species 54299 657 1 Chroococcidiopsis thermalis subclass 0 40 14693 1301283 order 1 0 13 9081 1118 Chroococcales 22 Chroococcaceae 7 2574 1890464 family 14 0 1 genus 1 0 16 3 Geminocystis 1543 669357 2625037 1527 2 no rank 0 1 Geminocystis sp. NIES-3709 691 1617448 0 species species 0 836 1615909 1 Geminocystis sp. NIES-3708 genus 0 102231 598 1 no rank 0 1 598 2623012 0 species Gloeocapsa sp. PCC 7428 1 1173026 598 0 2 1 genus Chondrocystis 2 419 268175 0 no rank 2648896 417 1 Chondrocystis sp. NIES-4102 1 417 2005460 0 species family 1 0 1 Cyanobacteriaceae 2 849 1890452 1 848 102234 0 genus 848 379064 Cyanobacterium aponinum 1 0 species 0 family 3978 1890450 8 genus 0 1453359 294 1 0 species 713887 294 1 Candidatus Atelocyanobacterium thalassa 2 1060 2546365 genus 0 2 2546366 1060 species 0 0 strain 1 Cyanothece sp. PCC 8802 395962 524 strain 0 41431 536 Cyanothece sp. PCC 8801 1 0 genus 534 263510 1 534 2546360 1 0 species strain 0 43989 534 1 Cyanothece sp. ATCC 51142 no rank 0 664 92682 2 genus 1 1 0 664 76023 2 Halothece no rank 0 663 2632878 1 species 0 663 65093 1 Halothece sp. PCC 7418 genus 0 2 28070 1426 1 767 2546359 species 0 1 Cyanothece sp. PCC 7822 497965 767 strain 0 1 2546356 659 species 0 0 strain 659 65393 Cyanothece sp. PCC 7424 1 family 1 0 4 4 Microcystaceae 1667 1890449 1125 1663 Microcystis 3 0 11 1 genus no rank 0 1 2643300 576 Microcystis sp. MC19 1 576 1967666 species 0 species 0 1126 1076 1 Microcystis aeruginosa 22 0 1 order Oscillatoriales 18 1150 5612 family 1 0 4 1892249 630 3 Cyanothecaceae 43988 626 Cyanothece 2 genus 1 27 0 2649277 599 1 0 no rank 1 Cyanothece sp. PCC 7425 599 395961 0 species 4 1892252 1461 0 family genus 1 0 2 1205 872 Trichodesmium 2 0 species 1 Trichodesmium erythraeum 1206 870 22 0 1 genus 2 Microcoleus 589 44471 no rank 0 2642155 567 1 1 Microcoleus sp. PCC 7113 567 1173027 0 species 2 1892251 763 0 family 63132 763 Geitlerinema 2 0 6 1 genus 1 757 2648775 0 no rank species 0 1173025 757 Geitlerinema sp. PCC 7407 1 family 1 0 6 1892254 2077 Oscillatoriaceae 5 Moorea 2 536 1155738 1 6 0 genus 1 Moorea producens 1155739 530 species 0 2 1158 1535 0 genus species 0 1 Oscillatoria acuminata 118323 779 0 species 482564 756 Oscillatoria nigro-viridis 1 Gomontiellaceae 3 659 1892255 1 0 1 family 0 22 1 genus Crinalium 2 658 241421 241425 636 1 Crinalium epipsammum species 0 phylum 0 16543 1297 36 class 121 0 1 188787 16543 Deinococci 36 0 140 1 order 118964 10282 Deinococcales 15 1 0 36 family 183710 10142 Deinococcaceae 14 Deinococcus 13 10106 1298 genus 1 139 0 1 Deinococcus peraridilitoris 432329 520 species 0 0 species 1768108 833 1 Deinococcus actinosclerus 1 Deinococcus gobiensis 502394 925 0 species 965 55148 Deinococcus proteolyticus 1 species 0 species 0 68909 897 Deinococcus geothermalis 1 species 0 1 Deinococcus puniceus 1182568 676 881 1309411 1 Deinococcus soli Cha et al. 2016 0 species 1 Deinococcus radiodurans 1299 920 0 species 1 Deinococcus swuensis 1182571 1152 0 species Deinococcus maricopensis 1 309887 492 0 species 0 no rank 1 817 2623546 species 0 2080419 817 1 Deinococcus sp. NW-56 species 0 1 Deinococcus deserti 310783 889 order 0 583 2762275 3 3 Trueperaceae 332247 583 0 5 1 family 1 0 9 genus Truepera 2 332248 578 Truepera radiovictrix 1 332249 569 0 species 17 Thermales 68933 5557 1 0 77 order family 1 26 0 5480 188786 Thermaceae 16 1 2 0 genus Oceanithermus 2 661 208447 1 Oceanithermus profundus 659 187137 species 0 1 4 0 genus 2 Marinithermus 186191 305 species 0 1 Marinithermus hydrothermalis 186192 301 95 0 1 genus 3103 270 8 Thermus 56956 212 1 Thermus brockianus 0 species species 0 56957 290 Thermus oshimai 1 1 Thermus parvatiensis 296 456163 species 0 1 Thermus scotoductus 452 37636 0 species 1 Thermus aquaticus 529 271 species 0 species 0 274 793 Thermus thermophilus 1 2619321 436 1 0 no rank 1111069 436 Thermus sp. CCB_US3_UF1 1 0 species genus 1 10 0 3 Meiothermus 1385 65551 species 0 383 52022 1 Meiothermus silvanus 277 992 1 Meiothermus ruber 0 species 201174 6264659 646 Actinobacteria phylum 1 82 0 0 no rank 4 1752188 886 species 0 Actinobacteria bacterium IMCC26077 1 1848755 195 0 species 1 Actinobacteria bacterium IMCC25003 1848255 253 0 species 1848754 271 Actinobacteria bacterium IMCC19121 1 1 Actinobacteria bacterium IMCC26103 167 1848756 0 species 538 84992 5 Acidimicrobiia 0 3 1 class 1 0 12 order 4 Acidimicrobiales 535 84993 99 84994 1 family 0 genus 0 1 99 53634 99 53635 1 Acidimicrobium ferrooxidans 0 species family 0 2 424 2448023 1 0 9 genus 424 682522 2 Ilumatobacter Ilumatobacter coccineus 1 467094 415 0 species 1 2 0 class 1497346 868 5 Thermoleophilia order 1 57 0 588673 866 4 Solirubrobacterales 809 320583 3 Conexibacteraceae 1 0 1 family Conexibacter 2 191494 808 10 0 1 genus 191495 798 1 Conexibacter woesei 0 species class 1 0 2 922 84995 Rubrobacteria 6 order 1 0 26 920 84996 5 Rubrobacterales 17 0 1 family 4 Rubrobacteraceae 84997 894 0 58 1 genus 3 Rubrobacter 42255 877 0 species 1 Rubrobacter xylanophilus 49319 559 species 0 260 42256 1 Rubrobacter radiotolerans class 1 0 917 84998 247119 32 Coriobacteriia 18 Eggerthellales 128011 1643822 0 959 1 order 1 0 11596 family Eggerthellaceae 17 1643826 127052 1 45 0 genus 2 Slackia 84108 2848 0 species 1 Slackia heliotrinireducens 2803 84110 10762 447020 Adlercreutzia 2 genus 1 6 0 1 Adlercreutzia equolifaciens 446660 10756 0 species 3 Eggerthella 84111 66278 1 0 66 genus no rank 0 2648737 2175 1 species 0 1 Eggerthella sp. YY7918 2175 502558 species 0 1 Eggerthella lenta 84112 64037 2 0 1 genus 2 Cryptobacterium 84162 617 species 0 Cryptobacterium curtum 1 84163 615 3 Gordonibacter 25384 644652 33 0 1 genus 13047 1335613 1 Gordonibacter urolithinfaciens species 0 0 species 1 Gordonibacter massiliensis 1841863 12304 0 6 1 genus 2 Phoenicibacter 8100 1981050 8094 1944646 1 Phoenicibacter massiliensis species 0 genus 1 5 0 Denitrobacterium 2 79603 1467 Denitrobacterium detoxificans 1 79604 1462 0 species 84999 118191 Coriobacteriales 13 0 641 1 order 106746 84107 5 Coriobacteriaceae family 1158 0 1 0 no rank 1 1510 84113 1510 1531429 Coriobacteriaceae bacterium 68-1-3 1 species 0 102874 102106 2 Collinsella genus 1 0 189 74426 102685 Collinsella aerofaciens 1 species 0 1 1204 33870 genus 0 species 0 Coriobacterium glomerans 1 33871 1204 family 1 0 283 Atopobiaceae 7 10804 1643824 1380 13 1 Atopobium genus 0 0 genus 2820 2767353 1 species 0 1 Atopobium parvulum 1382 2820 133925 7688 4 Olsenella 1 248 0 genus 133926 2076 1 Olsenella uli species 0 species 0 1805478 3411 1 Olsenella sp. Marseille-P2300 1 1953 2638792 0 no rank 1953 712411 1 Olsenella sp. oral taxon 807 species 0 Actinobacteria 593 1760 6014244 class 1 8911 0 137 0 1 order 57362 85011 Streptomycetales 82 382 0 1 family 81 Streptomycetaceae 2062 57225 3486 2063 Kitasatospora 5 0 65 1 genus 2066 983 1 Kitasatospora setae species 0 1 Kitasatospora albolonga 68173 560 0 species 0 no rank 1 1013 2633591 0 species 1 Kitasatospora sp. MMS16-BH015 2018025 1013 0 species Kitasatospora aureofaciens 1 865 1894 75 Streptomyces 1883 53357 1 2003 0 genus species 0 68202 406 1 Streptomyces fulvissimus 0 species 1 Streptomyces sp. XZHG99 753 2049881 0 species Streptomyces malaysiensis 1 92644 907 0 species Streptomyces noursei 1 618 1971 1 Streptomyces lydicus 1924 47763 0 species 642 408015 Streptomyces xiamenensis 1 0 species 0 species 718 553510 Streptomyces gilvosporeus 1 1 Streptomyces vietnamensis 576 362257 0 species 0 species 1 Streptomyces reticuli 1926 759 0 species 710 68570 1 Streptomyces albulus 0 species 1 Streptomyces griseochromogenes 68214 768 Streptomyces avermitilis 1 33903 551 species 0 species 0 586 68192 1 Streptomyces cyaneogriseus 38300 539 1 Streptomyces pristinaespiralis 0 species 1437453 874 1 Streptomyces leeuwenhoekii species 0 species 0 787 29303 Streptomyces cattleya 1 Streptomyces xinghaiensis 1 1038928 743 0 species 1783515 627 1 Streptomyces sp. S10(2016) 0 species species 0 1 Streptomyces scabiei 697 1930 0 species 146923 710 Streptomyces parvulus 1 0 species group 1477431 1293 2 0 species 1902 768 1 Streptomyces coelicolor species 0 42239 525 Streptomyces sampsonii 1 1 Streptomyces pactum 68249 1310 species 0 0 species 1901 730 1 Streptomyces clavuligerus 721 164348 1 Streptomyces puniciscabiei species 0 1 Streptomyces violaceusniger 68280 932 0 species 556 1642299 1 Streptomyces alfalfae 0 species 592 1916 Streptomyces lividans 1 0 species 0 species 1969 524 1 Streptomyces chartreusis 14935 2593676 24 no rank 0 1812480 709 1 Streptomyces sp. fd1-xmd species 0 species 0 1751294 615 1 Streptomyces sp. 4F 570 1972846 Streptomyces sp. Sge12 1 species 0 657 206662 Streptomyces sp. FR-008 1 0 species 0 species 561 862751 1 Streptomyces sp. SirexAA-E 1 Streptomyces sp. WAC00288 2094021 473 species 0 459 1984801 Streptomyces sp. CLI2509 1 0 species 1 Streptomyces sp. MOE7 1961713 557 species 0 1964449 572 1 Streptomyces sp. 3211 species 0 793 2059884 1 Streptomyces sp. CMB-StM0423 species 0 812 2135430 Streptomyces sp. P3 1 species 0 species 0 444103 628 1 Streptomyces sp. CNQ-509 1 Streptomyces sp. PAMC 26508 1265601 513 0 species 1262452 632 1 Streptomyces sp. 769 0 species 0 species 417 1837283 Streptomyces sp. S8 1 species 0 Streptomyces sp. M56 1 795 1495638 0 species Streptomyces sp. CCM_MD2014 1 1561022 640 497 234612 Streptomyces sp. TN58 1 0 species species 0 787 1849967 1 Streptomyces sp. SAT1 0 species 629 465541 Streptomyces sp. Mg1 1 910 1841249 1 Streptomyces sp. RTd22 species 0 species 0 1 Streptomyces sp. CdTB01 1725411 613 species 0 Streptomyces sp. Tue 6075 1 1661694 599 497 1649184 1 Streptomyces sp. CFMR 7 species 0 species 0 556 1616117 1 Streptomyces formicae 595 1889 1 Streptomyces ambofaciens species 0 1169025 522 1 Streptomyces pratensis 0 species 379067 1006 1 Streptomyces bingchenggensis species 0 species 0 730 67267 Streptomyces alboflavus 1 0 species 1 Streptomyces autolyticus 75293 783 0 species 1 Streptomyces pluripotens 544 1355015 528 1907 1 Streptomyces glaucescens 0 species 1 Streptomyces niveus 471 193462 0 species 0 species 1915 692 Streptomyces lincolnensis 1 0 species 1914 463 1 Streptomyces lavendulae 0 species Streptomyces violaceoruber 1 1935 710 species 0 1 Streptomyces albireticuli 1940 506 0 species 1888 1274 Streptomyces albus 1 Streptomyces venezuelae 1 1139 54571 species 0 1 Streptomyces hygroscopicus 1912 1665 0 species 2 1150 629295 0 species group 1 1482596 525 0 species subgroup Streptomyces griseus 1 525 1911 species 0 1482558 625 1 0 species subgroup 625 1908 1 Streptomyces globisporus species 0 496 1950 Streptomyces peucetius 1 0 species 42684 535 Streptomyces collinus 1 0 species Streptomyces rubrolavendulae 1 501 285473 species 0 order 1 0 32 Streptosporangiales 16 85012 6862 family 39 0 1 Streptosporangiaceae 5 2766 2004 2 Streptosporangium 2000 1128 genus 1 29 0 1 Streptosporangium roseum 2001 1099 0 species 1 0 6 genus Nonomuraea 2 83681 1599 no rank 0 1 1593 2593643 0 species 1 Nonomuraea sp. ATCC 55076 1909395 1593 7 Nocardiopsaceae 2756 83676 0 65 1 family Thermobifida 2 83677 362 genus 1 0 4 2021 358 1 Thermobifida fusca species 0 2329 2013 4 Nocardiopsis 1 31 0 genus 53437 588 1 Nocardiopsis alba 0 species 0 species 280236 1006 1 Nocardiopsis gilva 2014 704 Nocardiopsis dassonvillei 1 0 species 29 0 1 family 2012 1308 Thermomonosporaceae 3 genus 1 0 47 2019 1279 2 Thermomonospora 1232 2020 1 Thermomonospora curvata 0 species 0 514 1 order 85006 53043 Micrococcales 141 85020 4482 Dermabacteraceae 10 family 12 0 1 genus 2 0 1 315 36739 2 Dermabacter 1630135 313 1 Dermabacter vaginalis 0 species 0 genus 630 472568 1 1 Devriesea agamarum 630 472569 0 species genus 1 0 72 43668 3525 Brachybacterium 6 1 Brachybacterium faecium 775 43669 0 species 0 species 956 2017484 Brachybacterium sp. VM2412 1 Brachybacterium sp. VR2415 1 524 2017485 0 species 1 Brachybacterium ginsengisoli 1331682 598 species 0 0 no rank 1 600 2623841 species 0 1 Brachybacterium sp. P6-10-X1 1903186 600 family 1 0 29 Intrasporangiaceae 9 85021 1786 2 Arsenicicoccus 267408 516 1 14 0 genus 1 502 2663846 no rank 0 0 species 1658671 502 Arsenicicoccus sp. oral taxon 190 1 265976 544 2 Serinicoccus genus 1 27 0 species 0 1 Serinicoccus sp. JLT9 1758689 517 53457 340 Janibacter 2 4 0 1 genus 857417 336 1 Janibacter indicus species 0 Intrasporangium 2 357 53357 9 0 1 genus species 0 1 Intrasporangium calvum 348 53358 1 95 577468 0 no rank 0 genus 95 2038 1 1 Tropheryma whipplei 2039 95 species 0 1 0 1347 family 1268 24518 39 Micrococcaceae 1 3 0 genus 2 Glutamicibacter 1307 1742989 0 species Glutamicibacter arilaitensis 1 1304 256701 genus 0 358 2078575 1 358 1618207 1 Arthrobacter sp. IHBB 11108 species 0 Pseudarthrobacter 4 1742993 2332 genus 19 0 1 0 species 1 Pseudarthrobacter sulfonivorans 121292 886 Pseudarthrobacter chlorophenolicus 1 714 85085 species 0 species 0 Pseudarthrobacter phenanthrenivorans 1 361575 713 genus 6 0 1 3363 32207 3 Rothia Rothia dentocariosa 1 2047 757 species 0 species 0 43675 2600 Rothia mucilaginosa 1 1868332 1326 Neomicrococcus 2 1 51 0 genus Neomicrococcus aestuarii 1 1275 556325 0 species 1742992 602 2 Paenarthrobacter genus 0 8 1 1 Paenarthrobacter aurescens 43663 594 0 species 0 2 1 genus 858 1269 2 Micrococcus 0 species Micrococcus luteus 1 856 1270 1 0 24 genus 4 Kocuria 57493 1474 1 Kocuria palustris 482 71999 0 species species 0 446860 415 Kocuria flava 1 species 0 72000 553 Kocuria rhizophila 1 genus 0 1 292 1645 1 Renibacterium salmoninarum 1646 292 species 0 1 264 0 genus 1663 10729 15 Arthrobacter 0 no rank 8235 235627 12 1 Arthrobacter sp. QXT-31 488 1357915 0 species 0 species 1 Arthrobacter sp. YC-RL1 1652545 796 Arthrobacter sp. LS16 1 878 1690248 species 0 0 species 1 Arthrobacter sp. ERGS1:01 1704044 639 0 species Arthrobacter sp. FB24 1 632 290399 0 species 1849032 732 1 Arthrobacter sp. U41 species 0 Arthrobacter sp. PGP41 1 2079227 702 0 species Arthrobacter sp. ATCC 21022 1 535 1771959 2020486 684 Arthrobacter sp. YN 1 0 species 0 species Arthrobacter sp. ZXY-2 1 639 1806905 1494608 868 1 Arthrobacter sp. PAMC 25486 0 species Arthrobacter sp. Rue61a 1 1118963 642 species 0 Arthrobacter crystallopoietes 1 37928 813 species 0 species 0 1 Arthrobacter alpinus 656366 1417 Sinomonas 2 596707 530 genus 1 0 39 1 Sinomonas atrocyanea 491 37927 species 0 6 0 1 family 85016 1689 6 Cellulomonadaceae Cellulomonas 5 1683 1707 1 0 53 genus 0 species 1708 517 Cellulomonas fimi 1 Cellulomonas gilvus 1 11 361 0 species 1 340 2620175 0 no rank 0 species 340 2003551 Cellulomonas sp. PSBB021 1 1711 412 1 Cellulomonas flavigena species 0 145360 401 3 Sanguibacteraceae 1 33 0 family 1 0 11 genus 368 60919 Sanguibacter 2 0 species 1 Sanguibacter keddieii 357 60920 Jonesiaceae 2 85022 238 family 0 1 1 genus 0 237 43673 1 1 Jonesia denitrificans 43674 237 species 0 Microbacteriaceae 47 85023 14092 0 200 1 family genus 0 1 1434032 115 Pontimonas salivibrio 1 1159327 115 species 0 Cryobacterium 3 1423 69578 0 9 1 genus 1 2649013 567 0 no rank 1 Cryobacterium sp. LW097 1978566 567 0 species 0 species 1 Cryobacterium arcticum 670052 847 1759331 348 Cnuibacter 2 1 2 0 genus 0 species 1619308 346 Cnuibacter physcomitrellae 1 Curtobacterium 4 2034 831 13 0 1 genus 2 432 257496 0 no rank species 0 Curtobacterium sp. MR_MD2014 1 1561023 156 species 0 Curtobacterium sp. BH-2-1-1 1 276 1905847 69373 386 Curtobacterium pusillum 1 0 species 1 1705353 226 0 genus 0 species 708131 226 Aurantimicrobium minutum 1 242 337004 Microcella 2 genus 1 0 4 0 species Microcella alkaliphila 1 238 279828 Clavibacter 6 2008 1573 167 0 1 genus 1 0 431 species Clavibacter michiganensis 5 1841 28447 0 subspecies Clavibacter capsici 1 1874630 320 1 Clavibacter insidiosus 33014 322 subspecies 0 0 subspecies 1 Clavibacter sepedonicus 519 31964 0 subspecies Clavibacter nebraskensis 1 249 31963 2 Leifsonia 788 110932 genus 1 5 0 0 species Leifsonia xyli 1 783 1575 1 224 447237 0 genus 2626248 224 1 0 no rank species 0 224 1795630 Frondihabitans sp. PAMC 28766 1 33877 479 Agromyces 2 0 2 1 genus species 0 1 Agromyces aureus 453304 477 Rathayibacter 3 701 33886 1 3 0 genus 0 species 1 Rathayibacter tritici 33888 263 145458 435 1 Rathayibacter toxicus 0 species 148 0 1 genus Microbacterium 14 5237 33882 8 2609290 3153 no rank 0 1916917 305 1 Microbacterium sp. 1.5R species 0 1 Microbacterium sp. TPU 3598 1938334 325 species 0 1 Microbacterium sp. PAMC 28756 1795053 507 0 species 459 367477 1 Microbacterium sp. XT11 species 0 0 species 1906742 322 Microbacterium sp. BH-3-3-3 1 443 2103230 Microbacterium sp. str. 'China' 1 species 0 species 0 1696072 292 1 Microbacterium sp. CGR1 1714373 500 1 Microbacterium sp. No. 7 species 0 284 2033 Microbacterium testaceum 1 species 0 36805 396 Microbacterium aurum 1 species 0 0 species 300019 502 1 Microbacterium paludicola 351 162426 Microbacterium hominis 1 species 0 species 0 403 84292 Microbacterium chocolatum 1 3 1655488 475 no rank 0 0 clade 475 1655489 3 genus 2 0 1 Rhodoluna 3 529883 475 529884 270 1 Rhodoluna lacicola 0 species species 0 1 Candidatus Rhodoluna planktonica 203 535712 1 0 1 genus 795 518733 Microterricola 2 species 0 Microterricola viridarii 1 794 412690 0 3 1 family 465 125316 3 Beutenbergiaceae 1 5 0 genus 2 Beutenbergia 84756 462 1 Beutenbergia cavernae 457 84757 0 species 6 Dermacoccaceae 145357 1283 26 0 1 family 57499 550 2 Kytococcus 1 2 0 genus 548 1276 1 Kytococcus sedentarius 0 species genus 1 1 0 57495 239 Dermacoccus 2 species 0 Dermacoccus nishinomiyaensis 1 1274 238 745364 468 1 0 genus 571913 468 1 Luteipulveratus mongoliensis 0 species family 0 41 1 85017 2205 Promicromonosporaceae 8 10 0 1 genus 3 Cellulosimicrobium 803 157920 390 1710 1 Cellulosimicrobium cellulans 0 species 0 no rank 2624466 403 1 403 1980001 Cellulosimicrobium sp. TH-20 1 species 0 Isoptericola 3 883 254250 1 28 0 genus Isoptericola dokdonensis 1 372663 496 0 species Isoptericola variabilis 1 139208 359 0 species 1 478 186188 0 genus 0 species 1 Xylanimonas cellulosilytica 186189 478 85019 860 Brevibacteriaceae 3 1 4 0 family 2 Brevibacterium 1696 856 genus 1 0 5 0 species 851 1703 1 Brevibacterium linens 415 85018 Dermatophilaceae 3 0 12 1 family genus 1 0 40 1862 403 Dermatophilus 2 0 species 363 1863 Dermatophilus congolensis 1 1 9 0 order 4 Catenulisporales 414714 995 1 7 0 family 414877 986 3 Catenulisporaceae 5 0 1 genus 414878 979 2 Catenulispora species 0 Catenulispora acidiphila 1 304895 974 33 Propionibacteriales 85009 13121 0 77 1 order 19 Propionibacteriaceae 9193 31957 0 176 1 family 4 Cutibacterium 2189 1912216 1 3 0 genus species 0 33010 743 Cutibacterium avidum 1 1069 1747 1 Cutibacterium acnes species 0 Cutibacterium granulosum 1 33011 374 0 species 2801844 612 1 0 genus 0 species 1750 612 Pseudopropionibacterium propionicum 1 1 0 13 genus 2277 72763 Tessaracoccus 5 0 no rank 1 643 2635419 species 0 Tessaracoccus sp. T2.5-30 1 1909732 643 0 species 1 Tessaracoccus flavus 1610493 410 species 0 1 Tessaracoccus aquimaris 1332264 635 species 0 1 Tessaracoccus flavescens 399497 576 genus 1 19 0 3 Propionibacterium 1743 1504 species 0 Propionibacterium freudenreichii 1 1744 1203 0 no rank 1 2608905 282 282 671223 Propionibacterium sp. oral taxon 193 1 0 species 1 0 9 genus 531 29404 2 Microlunatus 0 species Microlunatus phosphovorus 1 522 29405 Acidipropionibacterium 2 789 1912215 genus 5 0 1 784 1748 Acidipropionibacterium acidipropionici 1 0 species 1115 203133 1 0 genus 1 2633994 1115 no rank 0 0 species 1 Propionimicrobium sp. Marseille-P3275 1115 1871034 85015 3851 13 Nocardioidaceae family 1 68 0 Kribbella 2 182639 605 genus 14 0 1 species 0 1 Kribbella flavida 182640 591 2 Pimelobacter 2044 481 1 0 5 genus 2045 476 Pimelobacter simplex 1 species 0 genus 1 7 0 Aeromicrobium 2 347 2040 species 0 1 Aeromicrobium erythreum 2041 340 1839 1678 Nocardioides 4 genus 37 0 1 1 Nocardioides dokdonensis 517 450734 species 0 1 455 2615069 no rank 0 0 species Nocardioides sp. JS614 1 196162 455 0 species 2045452 669 Nocardioides sp. 78 1 Micropruina 2 116071 672 genus 1 0 2 Micropruina glycogenica 1 75385 670 species 0 16 0 1 order Nakamurellales 4 888 1643684 3 Nakamurellaceae 872 85031 0 19 1 family 53460 853 2 Nakamurella genus 1 0 16 837 53461 Nakamurella multipartita 1 0 species 41 Pseudonocardiales 21295 85010 1 0 84 order family 273 0 1 2070 21211 40 Pseudonocardiaceae genus 1 0 4 Prauserella 2 142577 609 0 species 1 Prauserella marina 530584 605 6 0 1 genus Saccharothrix 2 1040 2071 1 Saccharothrix espanaensis 1034 103731 0 species genus 37 0 1 40566 1890 Actinosynnema 3 species 0 42197 894 1 Actinosynnema pretiosum Actinosynnema mirum 1 40567 959 0 species genus 6 0 1 Saccharopolyspora 2 1835 886 1836 880 1 Saccharopolyspora erythraea species 0 6 Actinoalloteichus 65496 3179 1 26 0 genus 0 species Actinoalloteichus hymeniacidonis 1 340345 504 2 2644606 1299 no rank 0 0 species 1 Actinoalloteichus sp. GBA129-24 1612551 641 Actinoalloteichus sp. AHMU CJ021 1 2072503 658 0 species 0 species Actinoalloteichus sp. ADI127-7 1 1612552 699 species 0 1470176 651 1 Actinoalloteichus hoggarensis Lentzea 2 790 165301 1 2 0 genus 0 species Lentzea guizhouensis 1 1586287 788 genus 1 0 143 4111 1847 Pseudonocardia 8 642 240495 Pseudonocardia dioxanivorans 1 0 species no rank 0 2619320 3326 6 Pseudonocardia sp. EC080610-09 1 1688404 626 0 species species 0 1 Pseudonocardia sp. EC080625-04 1096868 537 species 0 Pseudonocardia sp. EC080619-01 1 627 1096856 species 0 Pseudonocardia sp. HH130630-07 1 1690815 586 0 species 510 445576 1 Pseudonocardia sp. AL041005-10 species 0 Pseudonocardia sp. HH130629-09 1 440 1641402 genus 0 2 1 561 674734 2 Alloactinosynnema 2636053 559 1 0 no rank Alloactinosynnema sp. L-07 1 1653480 559 0 species 168 0 1 genus 1813 5250 7 Amycolatopsis 903 33910 1 Amycolatopsis mediterranei species 0 Amycolatopsis japonica 1 634 208439 0 species 1 Amycolatopsis orientalis 1255 31958 0 species Amycolatopsis methanolica 1 762 1814 0 species no rank 0 2 2618356 1528 Amycolatopsis sp. AA4 1 1896961 838 species 0 1911175 690 1 Amycolatopsis sp. BJA-103 species 0 1851 451 2 Saccharomonospora 1 16 0 genus species 0 435 1852 1 Saccharomonospora viridis 1 2029 1019 0 genus 1019 860235 1 Kibdelosporangium phytohabitans 0 species genus 2 0 1 43356 1152 Kutzneria 2 43357 1150 1 Kutzneria albida 0 species 0 order 198 1643683 2 family 1 1 0 85032 198 Acidothermaceae 2 28048 197 1 0 genus species 0 197 28049 1 Acidothermus cellulolyticus 85014 803 4 Glycomycetales 1 0 2 order 801 85034 3 Glycomycetaceae 1 16 0 family Stackebrandtia 2 785 283810 0 3 1 genus 0 species 1 Stackebrandtia nassauensis 782 283811 0 4 1 order 7 Frankiales 85013 2424 family 1 0 15 2420 74712 Frankiaceae 6 0 28 1 genus 1854 2405 5 Frankia species 0 Frankia casuarinae 1 106370 492 2632575 596 1 0 no rank species 0 1 Frankia sp. EAN1pec 298653 596 1 Frankia alni 1859 504 0 species species 0 298654 785 Frankia inefficax 1 0 7 1 order 622452 569 4 Kineosporiales 1 0 32 family 83778 562 Kineosporiaceae 3 33981 530 2 Kineococcus genus 0 5 1 1 Kineococcus radiotolerans 131568 525 species 0 order 0 1 1 1643682 1680 Geodermatophilales 8 Geodermatophilaceae 7 85030 1679 family 28 0 1 88138 787 Modestobacter 2 0 2 1 genus 0 species 477641 785 1 Modestobacter marinus genus 1 2 0 391 38501 Blastococcus 2 species 0 389 138336 Blastococcus saxobsidens 1 genus 9 0 1 473 1860 Geodermatophilus 2 1 Geodermatophilus obscurus 1861 464 species 0 order 538 0 1 Corynebacteriales 161 73645 85007 3 85029 708 0 family genus 1 21 0 37914 708 3 Dietzia 1 2617939 273 no rank 0 712270 273 Dietzia sp. oral taxon 368 1 0 species Dietzia timorensis 1 499555 414 species 0 28217 1653 52 Corynebacteriaceae 1 117 0 family 825 0 1 genus Corynebacterium 51 28100 1716 1 Corynebacterium atypicum 191610 271 species 0 Corynebacterium flavescens 1 328 28028 species 0 92706 459 1 [Brevibacterium] flavum species 0 0 species Corynebacterium singulare 1 161899 639 1 Corynebacterium frankenforstense 1230998 707 0 species species 0 169292 518 1 Corynebacterium aurimucosum 42817 318 Corynebacterium argentoratense 1 species 0 0 species 738 152794 Corynebacterium efficiens 1 65058 723 Corynebacterium ulcerans 1 0 species species 0 1408191 330 Corynebacterium deserti 1 0 species Corynebacterium aquilae 1 203263 379 1 Corynebacterium maris 575200 339 species 0 2 2624378 1039 no rank 0 Corynebacterium sp. NML98-0116 1 506 702967 0 species species 0 533 1487956 Corynebacterium sp. ATCC 6931 1 Corynebacterium kutscheri 1 35755 291 0 species 43770 924 1 Corynebacterium striatum 0 species 225326 606 1 Corynebacterium halotolerans 0 species species 0 536 191493 1 Corynebacterium sphenisci species 0 Corynebacterium pseudotuberculosis 1 1719 631 species 0 1 Corynebacterium cystitidis 35757 460 1 Corynebacterium imitans 573 156978 species 0 0 species 1705 728 1 Corynebacterium stationis 1 Corynebacterium variabile 457 1727 0 species 0 species 1 Corynebacterium resistens 643 258224 0 species Corynebacterium testudinoris 1 412 136857 0 species Corynebacterium simulans 1 987 146827 0 species Corynebacterium ammoniagenes 1 1697 444 315 1050174 Corynebacterium epidermidicanis 1 0 species 1721 504 1 Corynebacterium callunae species 0 Corynebacterium jeikeium 1 38289 1375 species 0 1652495 336 Corynebacterium crudilactis 1 0 species Corynebacterium terpenotabidum 1 89154 347 species 0 Corynebacterium glutamicum 1 1718 951 species 0 0 species 1 Corynebacterium kroppenstedtii 447 161879 species 0 Corynebacterium doosanense 1 1121358 544 1072256 407 1 Corynebacterium uterequi species 0 507 161895 1 Corynebacterium phocae 0 species 0 species 571915 415 1 Corynebacterium mustelae 401472 456 1 Corynebacterium ureicelerivorans species 0 1 Corynebacterium lactis 460 1231000 species 0 1 Corynebacterium camporealensis 161896 369 0 species species 0 567 1717 Corynebacterium diphtheriae 1 0 species 1404244 501 Corynebacterium glyciniphilum 1 43771 458 1 Corynebacterium urealyticum species 0 Corynebacterium falsenii 1 108486 835 0 species 0 species 1 Corynebacterium marinum 481 349751 0 species 160386 551 1 Corynebacterium casei Corynebacterium humireducens 1 1223514 557 species 0 1 Corynebacterium glaucum 544 187491 0 species Corynebacterium vitaeruminis 1 868 38305 species 0 1762 24273 Mycobacteriaceae 56 family 116 0 1 genus 0 2 903 1073531 species 0 Mycobacterium sinense 1 875328 552 0 species Mycobacterium terrae 1 1788 351 13 1866885 6914 genus 0 1 Mycobacterium chubuense 1800 416 species 0 Mycobacterium smegmatis 1 1772 536 species 0 species 0 1766 398 1 Mycobacterium fortuitum species 0 1795 516 1 Mycobacterium neoaurum 0 species 1 Mycobacterium rhodesiae 36814 341 1791 517 Mycobacterium aurum 1 species 0 Mycobacterium vaccae 1 1810 620 0 species Mycobacterium thermoresistibile 1 1797 565 species 0 Mycobacterium gilvum 1 1804 573 0 species Mycobacterium litorale 1 610 758802 0 species 1771 558 1 Mycobacterium phlei 0 species 110539 703 Mycobacterium vanbaalenii 1 0 species species 0 1 Mycobacterium goodii 561 134601 252 697025 1 0 genus 639313 252 1 Hoyosella subflava 0 species 1763 13584 34 Mycobacterium genus 1 0 1148 species 0 1 Mycobacterium marinum 462 1781 species 0 1768 627 1 Mycobacterium kansasii species 0 Mycobacterium ulcerans 1 376 1809 1300 77643 4 species group 0 0 species 1 Mycobacterium canettii 333 78331 334 0 1 species 967 1773 3 Mycobacterium tuberculosis biotype 0 1765 319 Mycobacterium bovis 1 Mycobacterium africanum 1 314 33894 biotype 0 0 no rank 5520 2642494 13 0 species 1 Mycobacterium sp. JS623 212767 374 453 189918 1 Mycobacterium sp. KMS 0 species 0 species 1 Mycobacterium sp. WY10 500 1920667 species 0 1 Mycobacterium sp. djl-10 1879023 632 1 Mycobacterium sp. YC-RL4 1682113 476 species 0 1570328 516 Mycobacterium sp. NRRL B-3805 1 0 species Mycobacterium sp. QIA-37 1 1561223 358 species 0 Mycobacterium sp. MCS 1 164756 428 0 species 1 Mycobacterium sp. PYR15 397 2051552 species 0 0 species 1273687 413 Mycobacterium sp. VKM Ac-1817D 1 0 species 91 1168287 Mycobacterium sp. MOTT36Y 1 0 species 164757 413 1 Mycobacterium sp. JLS 1545728 469 Mycobacterium sp. EPa45 1 0 species species 0 284 261524 Mycobacterium liflandii 1 0 species group 8 120793 2509 4 Mycobacterium intracellulare 675 1767 species 108 0 1 1 Mycobacterium yongonense 1203599 87 0 subspecies subspecies 0 1 Mycobacterium chimaera 222805 428 subspecies 0 1 Mycobacterium indicus pranii 35617 52 0 species 701042 190 Mycobacterium marseillense 1 930 1764 1 Mycobacterium avium 0 species 1138383 85 1 Mycobacterium paraintracellulare species 0 Mycobacterium colombiense 1 629 339268 0 species 1 Mycobacterium leprae 1769 131 0 species 0 species group 1 2249310 385 1 Mycobacterium shigaense 385 722731 species 0 0 species 482462 558 1 Mycobacterium dioxanotrophicus Mycobacterium haemophilum 1 284 29311 0 species genus 0 2504 670516 5 1 Mycobacterium abscessus 713 36809 species 0 355 1578165 Mycobacterium saopaulense 1 species 0 0 species Mycobacterium chelonae 1 496 1774 0 species 1520670 472 Mycobacterium stephanolepidis 1 0 species 83262 468 1 Mycobacterium immunogenum 305 697024 2 0 no rank genus 1 1 0 1847725 305 2 Lawsonella Lawsonella clevelandensis 1 1528099 304 species 0 family 4 0 1 Tsukamurellaceae 4 85028 696 1 20 0 genus 2060 692 Tsukamurella 3 species 0 1 Tsukamurella tyrosinosolvens 357 57704 2061 315 Tsukamurella paurometabola 1 species 0 0 1 1 family Segniliparaceae 3 316606 232 2 Segniliparus 231 286801 9 0 1 genus 286802 222 Segniliparus rotundus 1 0 species 1 64 0 family 31 Nocardiaceae 85025 15616 genus 155 0 1 7 Nocardia 5771 1817 1347 37326 1 Nocardia brasiliensis species 0 species 0 135487 1285 1 Nocardia cyriacigeorgica Nocardia terpenica 1 455432 757 species 0 species 0 1 Nocardia seriolae 37332 902 692 37329 Nocardia farcinica 1 0 species 0 species 633 37330 1 Nocardia nova 1827 9781 Rhodococcus 23 0 332 1 genus species 0 Rhodococcus hoagii 1 43767 374 1833 528 Rhodococcus erythropolis 1 species 0 0 species 1 Rhodococcus jostii 685 132919 192944 4280 12 no rank 0 1 Rhodococcus sp. WB1 1033922 479 0 species 679318 217 1 Rhodococcus sp. WMMA185 species 0 species 0 1 Rhodococcus sp. p52 271 935199 1 Rhodococcus sp. B7740 1564114 492 0 species species 0 260 1807790 1 Rhodococcus sp. BH4 species 0 493 1653478 1 Rhodococcus sp. PBTS 1 218 1570939 Rhodococcus sp. 2G 1 0 species 1045808 288 1 Rhodococcus sp. YL-1 0 species species 0 394 1805827 1 Rhodococcus sp. MTM3W5.2 312 1727214 Rhodococcus sp. H-CA8f 1 0 species Rhodococcus sp. 008 1 298 1723645 species 0 0 species Rhodococcus sp. PBTS 2 1 558 1653479 0 species 1 Rhodococcus rhodochrous 1829 303 0 species 1 Rhodococcus qingshengii 334542 349 585 1830 Rhodococcus ruber 1 0 species 37919 1145 1 Rhodococcus opacus species 0 Rhodococcus fascians 1 1828 485 0 species 191292 477 Rhodococcus aetherivorans 1 species 0 103816 238 1 Rhodococcus pyridinivorans species 0 85026 3060 Gordoniaceae 9 0 45 1 family Gordonia 8 2053 3015 1 0 52 genus 1 Gordonia terrae 2055 466 species 0 909 2657482 2 no rank 0 0 species 1 Gordonia sp. YC-JH1 342 2059875 567 337191 Gordonia sp. KTR9 1 species 0 1 Gordonia phthalatica 1136941 431 0 species species 0 84595 319 Gordonia polyisoprenivorans 1 2054 449 1 Gordonia bronchialis species 0 0 species 1004901 389 Gordonia iterans 1 1 0 93 order 85004 5730843 27 Bifidobacteriales family 1 0 11929 Bifidobacteriaceae 26 5730750 31953 Bifidobacterium 19 5714948 1678 1 0 3935 genus 28026 365539 1 Bifidobacterium pseudocatenulatum species 0 Bifidobacterium choerinum 1 35760 1065 species 0 166747 1686 Bifidobacterium catenulatum 2 species 1 0 45544 subspecies 0 1 Bifidobacterium kashiwanohense 630129 121203 0 species Bifidobacterium asteroides 1 1684 865 0 species 1689 3646 Bifidobacterium dentium 1 Bifidobacterium coryneforme 1 592 1687 0 species 1 Bifidobacterium longum 4640454 216816 species 0 0 species Bifidobacterium thermophilum 1 33905 2041 species 0 28025 1560 1 Bifidobacterium animalis 64234 1681 1 Bifidobacterium bifidum 0 species 0 species 158787 4667 1 Bifidobacterium scardovii 1 Bifidobacterium angulatum 1683 7550 0 species 0 species 397127 1685 Bifidobacterium breve 1 1691 601 Bifidobacterium indicum 1 species 0 1680 51936 Bifidobacterium adolescentis 1 species 0 638619 654 1 Bifidobacterium actinocoloniiforme species 0 0 species 1 Bifidobacterium pseudolongum 1694 1735 1652 2701 2 Gardnerella genus 1 0 15 species 0 1637 2702 1 Gardnerella vaginalis Scardovia 2 1204 196081 genus 0 1 1 0 species Scardovia inopinata 1 78259 1203 0 1 1 genus Parascardovia 2 1017 196082 0 species 1 Parascardovia denticolens 78258 1016 1 18 0 order 20 Actinomycetales 2037 26217 family 1 0 9826 2049 26199 Actinomycetaceae 19 0 1 1 genus Arcanobacterium 2 28263 641 Arcanobacterium haemolyticum 1 640 28264 species 0 2 Trueperella 643 1069494 genus 1 4 0 0 species 1661 639 1 Trueperella pyogenes 0 genus 1 1872 2529408 species 0 Actinomyces meyeri 1 52773 1872 genus 0 687 1 4444 2050 2 Mobiluncus 1 Mobiluncus curtisii 2051 3757 0 species 0 80 1 genus 9 Actinomyces 1654 8247 364 1912795 Actinomyces sp. VUL4_3 1 0 species 0 species Actinomyces oris 1 544580 790 1 Actinomyces pacaensis 1852377 3948 0 species 0 species Actinomyces radicidentis 1 713 111015 species 0 1960083 412 1 Actinomyces gaoshouyii no rank 0 3 1940 2609248 species 0 609 2081702 1 Actinomyces sp. oral taxon 897 0 species Actinomyces sp. oral taxon 414 1 712122 824 0 species Actinomyces sp. Chiba101 1 507 1851395 2 Actinotignum 526 1653174 1 1 0 genus 0 species 1 Actinotignum schaalii 59505 525 order 0 535 622450 3 Actinopolysporaceae 3 535 622451 family 1 0 4 1 0 13 genus Actinopolyspora 2 531 1849 0 species 1 Actinopolyspora erythraea 414996 518 Candidatus Nanopelagicales 12 2039638 2813 1 0 20 order 2793 2162846 11 family 0 1 5 0 genus 4 Candidatus Nanopelagicus 715 2039639 1884634 165 1 Candidatus Nanopelagicus limnes 0 species 1 Candidatus Nanopelagicus abundans 1884916 228 species 0 1884915 317 1 Candidatus Nanopelagicus hibericus species 0 Candidatus Planktophila 7 2078 622681 1 0 29 genus 1 Candidatus Planktophila sulfonica 1884904 317 0 species 0 species 210 573600 1 Candidatus Planktophila limnetica 1 Candidatus Planktophila lacus 1884913 299 0 species 0 species 457 1884905 1 Candidatus Planktophila versatilis species 0 1 Candidatus Planktophila vernalis 262 1884907 Candidatus Planktophila dulcis 1 504 1884914 0 species 1 52018 482 0 no rank 0 species Actinobacteria bacterium IMCC26256 1 482 1650658 no rank 0 2 490 1643818 0 1 1 genus 147067 490 Thermobispora 2 0 species 489 2006 1 Thermobispora bispora 17 0 1 order Micromonosporales 20 11068 85008 11051 28056 Micromonosporaceae 19 family 0 177 1 1 0 9 genus 168694 784 3 Salinispora species 0 1 Salinispora tropica 168695 383 168697 392 Salinispora arenicola 1 0 species genus 77 0 1 Actinoplanes 6 4935 1865 1 Actinoplanes friuliensis 1041 196914 0 species 1866 769 Actinoplanes missouriensis 1 species 0 3 3048 2626549 0 no rank 0 species 1067 649831 1 Actinoplanes sp. N902-109 species 0 2033844 991 1 Actinoplanes sp. SE50 990 134676 Actinoplanes sp. SE50/110 1 species 0 Micromonospora 4 1873 2663 0 47 1 genus 47850 847 1 Micromonospora aurantiaca 0 species 0 species 1003110 830 1 Verrucosispora maris no rank 0 1 939 2617518 0 species 648999 939 1 Micromonospora sp. L5 1 0 57 genus Plantactinospora 4 673534 2491 0 no rank 2631981 2434 3 0 species 1 Plantactinospora sp. BB1 722 2071627 0 species 2024580 922 Plantactinospora sp. KBS50 1 species 0 1 Plantactinospora sp. BC1 790 2108470 0 genus 1 84593 Verrucosispora 1 5 522 67819 phylum 0 522 1663419 Fimbriimonadia 5 1 0 2 class 1 1 0 order Fimbriimonadales 4 1663425 520 1663426 519 Fimbriimonadaceae 3 family 1 8 0 Fimbriimonas 2 1005038 511 6 0 1 genus 1 Fimbriimonas ginsengisoli 1005039 505 species 0 2 327 1859062 0 no rank genus 1 0 10 Thermobaculum 2 262406 327 166501 317 Thermobaculum terrenum 1 0 species Chloroflexi 44 200795 12297 9 0 1 phylum class 6 0 1 5 Caldilineae 475962 870 475963 864 Caldilineales 4 1 0 1 order family 0 1 1 3 Caldilineaceae 863 475964 genus 5 0 1 Caldilinea 2 233191 862 857 133453 Caldilinea aerophila 1 species 0 class 1 0 7 Dehalococcoidia 9 3132 301297 order 0 2 1 2140 1202465 5 Dehalococcoidales 1 3 0 family Dehalococcoidaceae 4 2138 1202464 61434 2135 3 Dehalococcoides genus 1 0 2 no rank 0 1 476 237581 1522671 476 Dehalococcoides sp. UCH007 1 0 species 1657 61435 Dehalococcoides mccartyi 1 species 0 670486 985 3 Dehalogenimonas 1 1 0 genus 0 species 484 1839801 Dehalogenimonas formicexedens 1 Dehalogenimonas lykanthroporepellens 1 500 552810 species 0 1 5 0 class 189775 773 7 Thermomicrobia 4 540 85000 0 subclass 85001 540 4 Sphaerobacterales order 15 0 1 255728 525 3 suborder 0 family 24 0 1 525 85002 3 Sphaerobacteraceae genus 1 12 0 2056 501 2 Sphaerobacter 2057 489 1 Sphaerobacter thermophilus species 0 order 0 189776 228 2 189777 228 2 Thermomicrobiaceae family 1 0 1 0 genus 227 499 1 species 0 227 500 1 Thermomicrobium roseum 0 5 1 class 32061 3793 10 Chloroflexia 32064 3788 9 Chloroflexales 26 0 1 order 4 1508595 1368 0 suborder family 0 24 1 1368 1508635 Roseiflexaceae 4 1 3 0 genus Roseiflexus 3 120961 1344 Roseiflexus castenholzii 1 595 120962 0 species no rank 0 2609473 746 1 1 Roseiflexus sp. RS-1 357808 746 species 0 0 suborder 4 1508594 2394 1106 2394 4 0 family Chloroflexus 4 2394 1107 1 29 0 genus 2 Chloroflexus aurantiacus 1108 1994 species 1 998 0 Chloroflexus sp. Y-400-fl 1 480224 996 0 strain species 0 371 152260 Chloroflexus aggregans 1 22 0 1 class 1238 1382928 Ardenticatenia 5 order 1 0 25 Ardenticatenales 4 1382929 1216 3 Ardenticatenaceae 1382930 1191 4 0 1 family 1988031 1187 2 Candidatus Promineofilum 1 0 19 genus 1168 1806508 Candidatus Promineofilum breve 1 0 species 1 0 15 class 7 Anaerolineae 292625 2482 2467 292629 Anaerolineales 6 order 1 0 8 0 25 1 family 5 Anaerolineaceae 2459 292628 no rank 0 1 1174 1324991 1174 1889813 Anaerolineaceae bacterium oral taxon 439 1 0 species 1 0 11 genus 844 233189 Anaerolinea 2 species 0 167964 833 Anaerolinea thermophila 1 416 2019482 1 genus 0 0 species 1 Brevefilum fermentans 416 1986204 1239 12411259 Firmicutes 726 phylum 554 0 1 91061 3620367 Bacilli 433 320 0 1 class order 1 0 760 267 Bacillales 435812 1385 family 0 7 1 4 Thermoactinomycetaceae 1620 186824 1 Laceyella 10 292635 genus 0 genus 110 0 1 1677050 1603 2 Novibacillus 1471761 1493 Novibacillus thermophilus 1 0 species 186823 5877 9 Alicyclobacillaceae 1 0 37 family Kyrpidia 3 1129704 1551 1 22 0 genus 2055160 742 1 Kyrpidia sp. EA-1 0 species 1 Kyrpidia tusciae 33943 787 species 0 2818 432330 Tumebacillus 3 genus 0 15 1 species 0 Tumebacillus algifaecis 1 1204 1214604 species 0 1 Tumebacillus avium 1903704 1599 Alicyclobacillus 2 1471 29330 genus 1 0 6 0 species 405212 1465 Alicyclobacillus acidocaldarius 1 118 Bacillaceae 186817 199333 0 1017 1 family 1 796 0 genus Geobacillus 15 11932 129337 1921421 634 Geobacillus genomosp. 3 1 0 species 0 species group 3345 1505648 4 species 0 33941 1578 1 Geobacillus thermoleovorans 0 species 1 Geobacillus lituanicus 169283 765 643 33938 1 Geobacillus thermocatenulatus 0 species 0 species Geobacillus kaustophilus 1 1462 359 species 0 33940 958 Geobacillus thermodenitrificans 1 species 0 1422 1038 Geobacillus stearothermophilus 1 0 no rank 6 4124 2642459 544556 250 Geobacillus sp. Y412MC61 1 species 0 0 species 1 Geobacillus sp. C56-T3 691437 482 1 Geobacillus sp. Y412MC52 550542 245 species 0 0 species 1547 581103 1 Geobacillus sp. Y4.1MC1 species 0 471223 1259 Geobacillus sp. WCH70 1 341 1233873 1 Geobacillus sp. GHH01 species 0 species 0 1 Geobacillus subterraneus 129338 1037 genus 0 2 2675230 3838 species 0 2352 665099 1 Bacillus oceanisediminis 1486 859143 Bacillus kochii 1 0 species 0 genus 2 4076 2675229 species 0 1034 264697 1 Bacillus muralis species 0 Bacillus simplex 1 1478 3042 7 Virgibacillus 8961 84406 genus 1 91 0 2620237 3168 2 0 no rank 1722 1911587 Virgibacillus sp. 6R 1 species 0 1446 403957 Virgibacillus sp. SK37 1 species 0 0 species 1 Virgibacillus necropolis 163877 1519 1473 1394 Virgibacillus pantothenticus 1 species 0 1482 1363 1 Virgibacillus halodenitrificans 0 species 1 Virgibacillus phasianinus 1426 2017483 species 0 genus 0 1 1 459532 1601 Terribacillus 2 0 species Terribacillus aidingensis 1 586416 1600 1566 29331 2 Amphibacillus genus 0 5 1 0 species Amphibacillus xylanus 1 1561 1449 genus 3 0 1 2 Oceanobacillus 3022 182709 Oceanobacillus iheyensis 1 182710 3019 species 0 96 0 1 genus Lysinibacillus 5 8755 400634 species 0 1658 1145276 Lysinibacillus varians 1 species 0 28031 1358 Lysinibacillus fusiformis 1 0 no rank 2636778 1556 1 Lysinibacillus sp. YS11 1 2072025 1556 0 species species 0 Lysinibacillus sphaericus 1 4087 1421 7713 2675234 5 0 genus Bacillus pseudofirmus 1 79885 1326 0 species 0 species Bacillus halodurans 1 1100 86665 1 Bacillus lehensis 300825 1267 species 0 species 0 199441 1545 1 Bacillus krulwichiae species 0 79880 2475 Bacillus clausii 1 9 0 1 genus Lentibacillus 2 175304 1435 0 species Lentibacillus amyloliquefaciens 1 1472767 1426 2894 45667 3 Halobacillus 1 0 3 genus Halobacillus halophilus 1 1570 1409 species 0 402384 1482 1 Halobacillus mangrovi 0 species 6769 150247 Anoxybacillus 6 genus 1 0 34 1 Anoxybacillus amylolyticus 294699 1047 species 0 Anoxybacillus flavithermus 1 33934 2069 species 0 species 0 Anoxybacillus gonensis 1 1249 198467 2 2639704 2370 0 no rank 0 species Anoxybacillus sp. B2M1 1 1204 1490052 1 Anoxybacillus sp. B7M1 1166 1490057 species 0 0 genus 1387 351195 1 1230341 1387 1 Salimicrobium jeotgali species 0 genus 7729 0 1 58 Bacillus 1386 126337 1479 1350 1 Bacillus smithii species 0 412384 1885 Bacillus aryabhattai 1 0 species 0 species 2718 561879 1 Bacillus safensis Bacillus endophyticus 1 135735 2008 species 0 Bacillus methanolicus 1 1948 1471 species 0 0 species 1386 86664 1 Bacillus flexus 1079 1178537 1 Bacillus xiamenensis species 0 9 653685 22958 species group 0 1648923 1988 Bacillus paralicheniformis 1 species 0 0 species 1 Bacillus subtilis 9118 1423 Bacillus vallismortis 1 72361 144 0 species 1402 2008 1 Bacillus licheniformis 0 species 2109 1452 Bacillus atrophaeus 1 0 species species 0 119858 1463 Bacillus sonorensis 1 1938374 6128 3 species subgroup 0 0 species 1 Bacillus amyloliquefaciens 2843 1390 0 species 1 Bacillus velezensis 2439 492670 species 0 1 Bacillus siamensis 659243 846 Bacillus pumilus 1 5751 1408 species 0 0 species group 1792192 1669 1 293387 1669 1 Bacillus altitudinis 0 species 86661 37063 10 species group 0 4803 2750818 3 no rank 0 0 species 1 Bacillus sp. ABP14 1892404 1124 species 0 Bacillus sp. HBCD-sjtu 1 2053832 1758 0 species 1839798 1921 1 Bacillus sp. FDAARGOS_235 species 0 155322 1189 1 Bacillus toyonensis Bacillus bombysepticus 1 1376 658666 0 species 1396 11432 Bacillus cereus 1 species 0 1 Bacillus mycoides 1405 4927 species 0 1 Bacillus anthracis 984 1392 species 0 species 0 580165 2043 Bacillus cytotoxicus 1 species 0 1428 10309 1 Bacillus thuringiensis species 0 3676 1398 1 Bacillus coagulans species 0 Bacillus gibsonii 1 79881 325 324767 2448 Bacillus infantis 1 species 0 0 species Bacillus megaterium 1 1404 4683 0 species 632773 1330 1 Bacillus beveridgei 1 Bacillus cohnii 33932 1716 0 species Bacillus glycinifermentans 1 1664069 2123 species 0 species 0 1546 1547283 1 Bacillus weihaiensis 0 no rank 185979 17843 19 822 2009331 1 Bacillus sp. MD-5 species 0 563169 680 Bacillus sp. SJ-10 1 0 species Bacillus sp. Lzh-5 1 275 2049935 species 0 0 species 1409 630 Bacillus sp. (in: Bacteria) 1 species 0 1127744 681 Bacillus sp. JS 1 species 0 1 Bacillus sp. OxB-1 98228 1206 259 1570330 1 Bacillus sp. BH072 species 0 0 species 1 Bacillus sp. H15-1 1274 1856406 1565991 1709 Bacillus sp. X1(2014) 1 species 0 species 0 1 Bacillus sp. LM 4-2 550 1628753 0 species Bacillus sp. FJAT-14266 1 1837130 1085 species 0 1 Bacillus sp. Pc3 1446792 617 0 species 756828 1372 Bacillus sp. WP8 1 species 0 666686 1811 Bacillus sp. 1NLA3E 1 species 0 Bacillus sp. 1s-1 1 2026248 1272 1 Bacillus sp. IHB B 7164 1827146 1597 species 0 0 species 871 1774743 1 Bacillus sp. SDLI1 Bacillus sp. 275 1 1941347 567 species 0 0 species 1574141 565 1 Bacillus sp. YP1 0 species 1 Bacillus horikoshii 79883 1618 1 Bacillus cellulosilyticus 1413 1485 species 0 0 genus 1 1791 1906945 0 species 1791 1426 Parageobacillus thermoglucosidasius 1 1329200 4357 Fictibacillus 3 genus 1 0 4 0 species 1 Fictibacillus arsenicus 255247 2053 1 Fictibacillus phosphorivorans 2300 1221500 0 species 1055323 1882 1 0 genus 33936 1882 1 Aeribacillus pallidus species 0 174 0 1 family 118562 186822 46 Paenibacillaceae 3 85151 3174 no rank 0 3174 55079 3 Aneurinibacillus 5 0 1 genus 0 species Aneurinibacillus soli 1 1714 1500254 1455 2642329 1 no rank 0 0 species 1455 1450761 1 Aneurinibacillus sp. XH2 genus 1 0 40 Brevibacillus 4 6784 55080 1 Brevibacillus laterosporus 1465 2766 0 species Brevibacillus formosus 1 1619 54913 species 0 species 0 1 Brevibacillus brevis 2359 1393 genus 4 0 1 Thermobacillus 2 76632 2074 1 Thermobacillus composti 377615 2070 0 species 1 0 820 genus Paenibacillus 36 106356 44249 1 Paenibacillus bovis 1616788 3123 0 species 1 Paenibacillus xylanexedens 528191 3190 0 species 0 species group 1 2044880 3702 species 0 Paenibacillus riograndensis 1 3702 483937 species 0 365617 2233 Paenibacillus sabinae 1 1 Paenibacillus larvae 1663 1464 species 0 0 species 1 Paenibacillus mucilaginosus 61624 3566 species 0 1809 1763538 1 Paenibacillus crassostreae 0 species 1 Paenibacillus ihbetae 1870820 3147 0 species 162209 2197 1 Paenibacillus naphthalenovorans 0 species 189426 2544 1 Paenibacillus odorifer species 0 3905 44251 1 Paenibacillus durus 0 species 172713 2227 1 Paenibacillus kribbensis 0 species 3059 1462996 Paenibacillus yonginensis 1 species 0 Paenibacillus donghaensis 1 414771 3628 59893 1888 1 Paenibacillus peoriae 0 species species 0 1406 7278 Paenibacillus polymyxa 1 no rank 0 185978 39329 13 0 species 1 Paenibacillus sp. IHBB 10380 2166 1566358 1536774 4029 1 Paenibacillus sp. FSL H7-0357 0 species 0 species 324057 2895 1 Paenibacillus sp. JDR-2 species 0 Paenibacillus sp. lzh-N1 1 2069255 2074 species 0 1536771 4223 Paenibacillus sp. FSL R5-0912 1 species 0 Paenibacillus sp. BIHB4019 1 1870819 2380 species 0 1695218 2558 1 Paenibacillus sp. 32O-W 0 species Paenibacillus sp. Y412MC10 1 481743 2852 1 Paenibacillus sp. FSL H7-0737 2141 1536775 0 species species 0 1 Paenibacillus sp. FSL R5-0345 1897 1536770 1536769 4013 1 Paenibacillus sp. FSL P4-0081 species 0 species 0 4180 1536773 1 Paenibacillus sp. FSL R7-0331 1 Paenibacillus sp. FSL R7-0273 3921 1536772 0 species 0 species 3694 189425 Paenibacillus graminis 1 2923 169760 Paenibacillus stellifer 1 species 0 0 species Paenibacillus beijingensis 1 2296 1126833 159743 2141 Paenibacillus terrae 1 species 0 0 species Paenibacillus borealis 1 160799 3935 Paenibacillus swuensis 1 1178515 2059 0 species family 1 0 51 9 Listeriaceae 186820 14166 genus 7 0 1 2755 1354 2 Brochothrix species 0 1 Brochothrix thermosphacta 1347 2756 1637 12761 6 Listeria genus 1 290 0 species 0 1638 2125 Listeria ivanovii 1 1642 2347 1 Listeria innocua 0 species species 0 Listeria seeligeri 1 1272 1640 Listeria welshimeri 1 1637 1643 species 0 species 0 1 Listeria monocytogenes 1639 5090 9 7128 539002 no rank 0 no rank 0 539742 5411 7 7 Exiguobacterium 33986 5411 genus 1 0 278 0 no rank 4 2644629 3122 1 Exiguobacterium sp. ZWU0009 729 1224749 0 species 1 Exiguobacterium sp. MH3 1399115 611 species 0 360911 1043 1 Exiguobacterium sp. AT1b 0 species species 0 1 Exiguobacterium sp. U13-1 739 1849031 species 0 1103 332410 Exiguobacterium sibiricum 1 132920 908 Exiguobacterium antarcticum 1 0 species no rank 0 2 1717 539738 0 8 1 genus Gemella 2 1378 1717 no rank 0 2624949 1709 1 Gemella sp. oral taxon 928 1 1785995 1709 0 species 1 48 0 family 27 Planococcaceae 186818 31224 genus 1 0 61 7368 1569 5 Sporosarcina 0 species Sporosarcina ureae 1 1571 3401 2647733 2571 2 0 no rank 1283 1930764 1 Sporosarcina sp. P33 0 species 1 Sporosarcina sp. P37 1288 1930546 0 species species 0 1 Sporosarcina psychrophila 1335 1476 4414 648800 Solibacillus 3 14 0 1 genus no rank 0 2637870 2010 1 Solibacillus sp. R5-41 1 2048654 2010 0 species 76853 2390 1 Solibacillus silvestris 0 species 1548 648802 Rummeliibacillus 2 genus 0 9 1 1539 241244 1 Rummeliibacillus stabekisii 0 species 1 180 0 genus 1372 13485 Planococcus 12 species 0 1038856 1048 1 Planococcus plakortidis 1160 1598147 1 Planococcus faecalis 0 species species 0 1 Planococcus halocryophilus 1215089 963 0 no rank 2 2324 2662419 2058136 1385 Planococcus sp. MB-3u-03 1 species 0 Planococcus sp. PAMC 21323 1 1526927 939 species 0 0 species 1 Planococcus kocurii 1374 1006 species 0 1 Planococcus sp. L10.15 1302659 953 0 species 161360 1221 1 Planococcus antarcticus 0 species 1 Planococcus rifietoensis 1436 200991 species 0 1 Planococcus donghaensis 773 414778 0 species 1 Planococcus maritimus 2421 192421 1 0 3 genus 2532 157226 Jeotgalibacillus 2 species 0 Jeotgalibacillus malaysiensis 1 1508404 2529 1829 1649 2 Kurthia genus 1 1 0 2644826 1828 1 0 no rank 1 Kurthia sp. 11kri321 1828 1750719 0 species family 1 5 0 2 Sporolactobacillaceae 186821 1717 0 no rank 1712 663587 1 85683 1712 1 [Bacillus] selenitireducens species 0 55425 90964 42 Staphylococcaceae family 1 4416 0 1 0 1 genus 2 Auricoccucs 626 2005363 Auricoccus indicus 1 1849491 625 species 0 genus 0 41 1 69965 5141 Macrococcus 4 0 species 1 Macrococcus caseolyticus 2395 69966 0 no rank 1 2619255 1396 species 0 1396 1898474 1 Macrococcus sp. IME1552 species 0 Macrococcus canis 1 1855823 1309 1279 43558 Staphylococcus 33 genus 0 1694 1 0 species 29384 857 1 Staphylococcus kloosii species 0 1 Staphylococcus argenteus 1293 985002 214473 1052 Staphylococcus nepalensis 1 species 0 1 Staphylococcus sciuri 1296 1324 species 0 species 0 Staphylococcus piscifermentans 1 70258 992 0 species 1 Staphylococcus pettenkoferi 170573 550 Staphylococcus agnetis 1 985762 937 species 0 species 0 1286 1275 1 Staphylococcus simulans Staphylococcus hominis 1 1290 956 0 species 0 species 1 Staphylococcus capitis 29388 1326 0 species 1283 1027 1 Staphylococcus haemolyticus 0 species 1282 1791 Staphylococcus epidermidis 1 0 species 1 Staphylococcus simiae 308354 1128 1 Staphylococcus saprophyticus 29385 958 0 species 0 species Staphylococcus xylosus 1 1288 1594 748 1281 Staphylococcus carnosus 1 0 species 0 species 1 Staphylococcus stepanovicii 643214 1315 Staphylococcus cohnii 1 1038 29382 0 species Staphylococcus schleiferi 1 1295 1236 0 species 1294 777 1 Staphylococcus muscae species 0 species 0 1 Staphylococcus lutrae 155085 874 species 0 1292 945 1 Staphylococcus warneri 0 species 61015 967 Staphylococcus succinus 1 1605 283734 1 Staphylococcus pseudintermedius species 0 Staphylococcus felis 1 1261 46127 0 species Staphylococcus lugdunensis 1 28035 1014 0 species 0 species 1284 848 Staphylococcus hyicus 1 70255 1139 1 Staphylococcus condimenti species 0 0 species Staphylococcus equorum 1 1212 246432 0 species 1280 6374 Staphylococcus aureus 1 882 91994 1 no rank 0 species 0 882 1715860 Staphylococcus sp. AntiMn-1 1 45972 2569 1 Staphylococcus pasteuri 0 species Salinicoccus 2 45669 1684 6 0 1 genus 0 species 1678 407035 1 Salinicoccus halodurans Lactobacillales 165 186826 3184235 1 9503 0 order 1 0 76 family 81850 13819 Leuconostocaceae 17 6 Weissella 46255 4310 1 0 24 genus Weissella paramesenteroides 1 1249 601 species 0 0 species 1631871 682 1 Weissella jogaejeotgali species 0 137591 1595 1 Weissella cibaria 935 165096 Weissella koreensis 1 species 0 species 0 473 759620 Weissella ceti 1 0 382 1 genus 1243 8947 Leuconostoc 9 2685106 525 1 0 no rank 0 species 979982 525 Leuconostoc sp. C2 1 651 33964 1 Leuconostoc citreum species 0 0 species 939 1244 1 Leuconostoc gelidum 0 species 1245 1969 1 Leuconostoc mesenteroides 0 species Leuconostoc carnosum 1 1252 663 0 species 575 136609 Leuconostoc kimchii 1 255248 1332 1 Leuconostoc garlicum species 0 0 species 1246 1911 1 Leuconostoc lactis 46254 486 1 genus 0 1247 486 1 Oenococcus oeni 0 species 138 0 1 family 84300 81852 Enterococcaceae 20 Enterococcus 12 1350 76649 5374 0 1 genus species 0 1925 1354 Enterococcus hirae 1 3 2608891 5583 no rank 0 1 Enterococcus sp. CR-Ec1 2057791 1485 0 species 0 species 2699 2060307 Enterococcus sp. FDAARGOS_375 1 0 species 1 Enterococcus sp. FDAARGOS_163 1399 2060306 species 0 1 Enterococcus thailandicus 1305 417368 1 Enterococcus mundtii 53346 1837 species 0 1 Enterococcus faecium 1352 40125 0 species 0 species Enterococcus wangshanyuanii 1 1918 2005703 0 species 37734 1258 1 Enterococcus casseliflavus species 0 53345 2235 1 Enterococcus durans Enterococcus faecalis 1 15089 1351 0 species Vagococcus 3 2737 3121 genus 1 38 0 0 species 633807 1433 1 Vagococcus penaei 0 species 1650 519472 Vagococcus teuberi 1 51668 3194 Tetragenococcus 2 1 0 22 genus 51669 3172 Tetragenococcus halophilus 1 0 species genus 7 0 1 Melissococcus 2 1198 33969 0 species 1 Melissococcus plutonius 1191 33970 1 28 0 family 10317 186828 11 Carnobacteriaceae genus 0 78 1 Carnobacterium 5 6180 2747 2975 257487 2 0 no rank species 0 1 Carnobacterium sp. CP1 1564681 1403 208596 1572 1 Carnobacterium sp. 17-4 0 species species 0 1383 147709 1 Carnobacterium inhibens 2751 1744 Carnobacterium maltaromaticum 1 species 0 191769 1826 2 Marinilactibacillus 1 19 0 genus 1 2632303 1807 no rank 0 0 species Marinilactibacillus sp. 15R 1 1807 1911586 Jeotgalibaca 3 2283 1470540 1 12 0 genus 1 1520 2621505 no rank 0 species 0 1903686 1520 1 Jeotgalibaca sp. PTS2502 species 0 Jeotgalibaca dankookensis 1 751 708126 1 342 0 family Lactobacillaceae 58 103900 33958 genus 0 5179 2742598 3 0 species 97478 2047 Lactobacillus mucosae 1 1613 1251 Lactobacillus fermentum 1 0 species species 0 1 Lactobacillus reuteri 1598 1881 Lactobacillus 16 1578 22659 1 0 4949 genus 0 species 33959 2052 Lactobacillus johnsonii 1 species 0 401 83683 Lactobacillus amylolyticus 1 species 0 1596 1729 Lactobacillus gasseri 1 0 species 267818 671 Lactobacillus kefiranofaciens 1 1 Lactobacillus acetotolerans 643 1600 species 0 Lactobacillus delbrueckii 1 1584 2657 species 0 0 species 1 Lactobacillus helveticus 1811 1587 species 0 1 Lactobacillus gallinarum 772 52242 0 species 1604 2674 1 Lactobacillus amylovorus 0 no rank 4 2620435 2692 1 Lactobacillus sp. wkB8 1545702 660 species 0 2108362 655 1 Lactobacillus sp. D1501 species 0 2099788 640 1 Lactobacillus sp. CBA3605 species 0 Lactobacillus sp. CBA3606 1 737 2099789 0 species Lactobacillus jensenii 1 732 109790 species 0 species 0 876 1579 1 Lactobacillus acidophilus 0 genus 6 2767879 6807 392416 1122 1 Lactobacillus crustorum 0 species Lactobacillus farciminis 1 1612 1018 0 species Lactobacillus heilongjiangensis 1 1074467 1358 species 0 species 0 1 Lactobacillus allii 1847728 1174 1 Lactobacillus ginsenosidimutans 1007676 1016 0 species species 0 1602 1119 1 Lactobacillus alimentarius 0 genus 30573 2759736 3 Lactobacillus rhamnosus 1 25388 47715 species 0 1 Lactobacillus casei 3019 1582 species 0 1 Lactobacillus paracasei 1597 2166 0 species 1 0 107 genus 1253 5183 6 Pediococcus species group 0 1 756 1670797 756 1254 1 Pediococcus acidilactici 0 species 51663 1103 Pediococcus damnosus 1 species 0 0 species Pediococcus inopinatus 1 903 114090 species 0 Pediococcus claussenii 1 187452 914 1255 1400 Pediococcus pentosaceus 1 0 species 2767890 837 1 genus 0 Lactobacillus hokkaidonensis 1 1193095 837 species 0 3317 2767842 3 genus 0 0 species 1 Lactobacillus pentosus 577 1589 Lactobacillus plantarum 1 1590 2231 0 species species 0 1 Lactobacillus paraplantarum 60520 509 0 genus 2850 2767885 2 0 species 1 Lactobacillus sakei 1599 1707 Lactobacillus curvatus 1 1143 28038 species 0 4 14177 2767887 0 genus 0 species 1624 6630 1 Lactobacillus salivarius 1 Lactobacillus acidipiscis 1257 89059 0 species Lactobacillus ruminis 1 1623 5201 0 species 1601 1089 1 Lactobacillus agilis 0 species 0 genus 2346 2767876 1 Lactobacillus amylophilus 1 1603 2346 0 species genus 0 2767892 1004 1 1004 240427 1 Lactobacillus paracollinoides 0 species 0 genus 378 2767877 1 Lactobacillus kunkeei 1 148814 378 species 0 2170 2767886 3 genus 0 species 0 1580 1038 1 Lactobacillus brevis Lactobacillus koreensis 1 637971 759 0 species species 0 373 267363 1 Lactobacillus zymae 0 genus 2 1350 2767881 Lactobacillus sanfranciscensis 1 1625 655 0 species 1 Lactobacillus lindneri 695 53444 species 0 0 genus 2732 2767889 2 Lactobacillus backii 1 375175 1429 0 species 0 species Lactobacillus coryniformis 1 1610 1303 2767893 1996 3 genus 0 species 0 782 1581 1 Lactobacillus buchneri species 0 152331 565 Lactobacillus parabuchneri 1 species 0 Lactobacillus curieae 1 1138822 649 Streptococcaceae 49 1300 2954854 family 0 9915 1 0 9639 1 genus 2927706 1301 Streptococcus 43 species 0 5824 28037 Streptococcus mitis 1 species 0 Streptococcus iniae 1 1346 2822 species group 0 671232 57888 3 76860 17524 Streptococcus constellatus 1 0 species 0 species 1 Streptococcus anginosus 37607 1328 0 species Streptococcus intermedius 1 1338 2757 1326 6548 1 Streptococcus acidominimus species 0 0 species Streptococcus pseudopneumoniae 1 257758 1267 Streptococcus infantarius 1 102684 11374 species 0 species 0 Streptococcus parasanguinis 1 1318 80740 0 species 1 Streptococcus lutetiensis 150055 6161 species 0 1 Streptococcus parauberis 1348 2674 0 species 1814128 1381 1 Streptococcus halotolerans 45634 2475 1 Streptococcus cristatus 0 species Streptococcus pluranimalium 1 82348 1841 species 0 1304 73417 Streptococcus salivarius 1 0 species 46589 1307 1 Streptococcus suis 0 species species 0 1 Streptococcus himalayensis 1888195 1037 0 species 1 Streptococcus oralis 3897 1303 Streptococcus pneumoniae 1 1313 4650 species 0 0 species Streptococcus merionis 1 400065 904 1 Streptococcus pyogenes 4859 1314 species 0 0 species Streptococcus equinus 1 23889 1335 4181 1302 1 Streptococcus gordonii 0 species Streptococcus uberis 1 1349 1529 species 0 0 species group 2 5613 119603 1334 3718 1 Streptococcus dysgalactiae species 0 species 0 1336 1895 Streptococcus equi 1 0 no rank 45598 2608887 7 species 0 Streptococcus sp. I-G2 1 1156431 5242 1 Streptococcus sp. A12 1759399 5682 species 0 1 Streptococcus sp. oral taxon 431 712633 2355 species 0 0 species Streptococcus sp. NPS 308 1 985 1902136 0 species 1 Streptococcus sp. FDAARGOS_192 1839799 24674 0 species 1156433 5553 Streptococcus sp. I-P16 1 species 0 1107 1319 Streptococcus sp. 'group B' 1 59310 6739 Streptococcus macedonicus 1 species 0 1308 2458585 1 Streptococcus thermophilus species 0 0 species 1825069 1015 1 Streptococcus marmotae species 0 197614 6407 Streptococcus pasteurianus 1 1 Streptococcus mutans 1727 1309 0 species 0 species 1811193 1185 1 Streptococcus pantholopis 1305 1938 1 Streptococcus sanguinis 0 species species 0 Streptococcus agalactiae 1 1311 35886 species 0 315405 7427 Streptococcus gallolyticus 1 185 0 1 genus Lactococcus 5 17233 1357 1 Lactococcus lactis 1358 11914 0 species species 0 Lactococcus piscium 1 1384 1364 1 Lactococcus raffinolactis 1408 1366 0 species 1 Lactococcus garvieae 1363 2342 0 species 8 Aerococcaceae 186827 6503 1 0 25 family genus 0 96 1 1375 6478 Aerococcus 7 1 Aerococcus sanguinicola 803 119206 species 0 1 Aerococcus christensenii 87541 1263 species 0 1168 1376 Aerococcus urinae 1 0 species 51665 1479 Aerococcus urinaeequi 1 species 0 1 Aerococcus viridans 1377 759 species 0 0 species 128944 910 1 Aerococcus urinaehominis 1 1039 263855 0 no rank species 0 1993866 1039 Lactobacillales bacterium 1 class 1 0 1 19 Tissierellia 39008 1737404 1642 0 1 order 38004 1737405 Tissierellales 16 3 Gottschalkiaceae 2042895 2928 family 1 4 0 2 Gottschalkia 2924 1505664 1 1 0 genus 1556 2923 1 Gottschalkia acidurici 0 species family 1 6077 0 33434 1570339 Peptoniphilaceae 12 2 Murdochiella 1161127 14030 genus 0 2 1 0 species 1852373 14028 1 Murdochiella vaginalis 0 9 1 genus Anaerococcus 3 3555 165779 Anaerococcus mediterraneensis 1 1511 1870984 0 species 0 species 1 Anaerococcus prevotii 2035 33034 1 0 8 genus Peptoniphilus 2 2108 162289 0 no rank 1 2637196 2100 Peptoniphilus sp. ING2-D1G 1 2100 1912856 species 0 0 19 1 genus 2 Finegoldia 4452 150022 species 0 1 Finegoldia magna 1260 4433 543311 3212 2 Parvimonas genus 1 39 0 33033 3173 1 Parvimonas micra species 0 1737407 1003 2 no rank 0 2 Ezakiella 1003 1582879 1 2 0 genus 1001 1852374 1 Ezakiella massiliensis 0 species Erysipelotrichia 11 294565 526524 class 32 0 1 0 13 1 order 10 Erysipelotrichales 526525 294533 family 1 172 0 Erysipelotrichaceae 9 294520 128827 1 0 103 genus Erysipelothrix 3 1647 5361 0 species Erysipelothrix rhusiopathiae 1 1648 3137 0 species 1514105 2121 1 Erysipelothrix larvae 1 544447 251173 no rank 0 species 0 1 Erysipelotrichaceae bacterium I46 1834207 251173 genus 23 0 1 2 Turicibacter 30423 191303 0 no rank 30400 2638206 1 Turicibacter sp. H121 1 1712675 30400 species 0 Faecalibaculum 2 7391 1729679 genus 1 8 0 species 0 Faecalibaculum rodentium 1 7383 1702221 1 0 45 class 909932 97767 Negativicutes 31 1 0 3855 order 41446 1843489 11 Veillonellales 37591 31977 Veillonellaceae 10 1 0 3878 family 1 0 4 genus 909928 1427 2 Negativicoccus 1 Negativicoccus massiliensis 1423 1702287 species 0 906 11468 2 Megasphaera 1 0 2538 genus 8930 907 Megasphaera elsdenii 1 species 0 genus 24 0 1 4464 39948 2 Dialister 0 species Dialister pneumosintes 1 39950 4440 Veillonella 3 29465 16354 1 0 19 genus species 0 Veillonella rodentium 1 3230 248315 0 species Veillonella parvula 1 29466 13105 14 Selenomonadales 27465 909929 order 1 81 0 Sporomusaceae 4 1843490 6005 1 3 0 family 1 20 0 genus 365348 6002 Pelosinus 3 1 2629460 2699 0 no rank Pelosinus sp. UFO1 1 484770 2699 0 species 0 species Pelosinus fermentans 1 365349 3283 586 0 1 family Selenomonadaceae 9 1843491 21379 genus 1 0 134 6 Selenomonas 970 16552 971 6664 1 Selenomonas ruminantium species 0 species 0 2657 69823 1 Selenomonas sputigena 0 no rank 2637378 7097 3 Selenomonas sp. oral taxon 136 1 713030 2509 species 0 2231 712538 Selenomonas sp. oral taxon 478 1 0 species species 0 Selenomonas sp. oral taxon 920 1 1884263 2357 2 Megamonas 158846 4241 genus 1 0 18 species 0 4223 158847 1 Megamonas hypermegale 1843488 28811 Acidaminococcales 5 order 1 50 0 28761 909930 4 Acidaminococcaceae family 34 0 1 904 28727 3 Acidaminococcus genus 1 42 0 species 0 905 8121 1 Acidaminococcus fermentans species 0 Acidaminococcus intestini 1 187327 20564 1132 84086 1 0 no rank endosymbiont 'TC1' of Trimyema compressum 1 1132 243899 species 0 Limnochordia 5 1676648 1112 class 12 0 1 1100 1676649 4 Limnochordales 13 0 1 order 1087 1676650 3 Limnochordaceae family 0 6 1 1081 1676651 2 Limnochorda genus 26 0 1 1555112 1055 Limnochorda pilosa 1 0 species 186801 8354136 223 Clostridia 1 367 0 class 166 Clostridiales 8302128 186802 order 1 29077 0 family 8 0 1 216572 12347 Oscillospiraceae 3 2 Oscillibacter 459786 12339 genus 0 43 1 1 Oscillibacter valericigenes 351091 12296 0 species family 34 0 1 990719 39627 3 Christensenellaceae genus 0 754 1 39593 990721 Christensenella 2 Christensenella massiliensis 1 38839 1805714 0 species 29 Peptococcaceae 42732 186807 family 131 0 1 Desulfosporosinus 4 6051 79206 genus 1 0 36 885581 2236 1 Desulfosporosinus acidiphilus 0 species 2038 1563 1 Desulfosporosinus orientis 0 species 1741 79209 1 Desulfosporosinus meridiei 0 species 0 83 1 genus 8570 36853 5 Desulfitobacterium 1619 142877 Desulfitobacterium metallireducens 1 0 species Desulfitobacterium hafniense 1 49338 3241 0 species Desulfitobacterium dehalogenans 1 2120 36854 species 0 species 0 233055 1507 1 Desulfitobacterium dichloroeliminans genus 0 1854 2282742 1 58138 1854 1 Desulfotomaculum acetoxidans 0 species 0 genus 2286 2282740 1 0 species 1 Desulfotomaculum gibsoniae 2286 102134 1 0 5 genus Dehalobacterium 2 51514 4058 species 0 1 Dehalobacterium formicoaceticum 51515 4053 119 0 1 genus Dehalobacter 4 7250 56112 1 Dehalobacter restrictus 55583 2034 species 0 2 2635733 5097 0 no rank 0 species 1147129 2461 1 Dehalobacter sp. DCA 1 Dehalobacter sp. CF 2636 1131462 species 0 54 0 1 genus 1562 6720 5 Desulfotomaculum 2065 1564 1 Desulfotomaculum ruminis 0 species 0 species 59610 1699 1 Desulfotomaculum reducens 0 species Desulfotomaculum ferrireducens 1 1833852 1541 Desulfotomaculum nigrificans 1 1565 1361 0 species genus 5 0 1 51196 2585 2 Syntrophobotulus 0 species 1 Syntrophobotulus glycolicus 51197 2580 genus 1 0 11 2 Candidatus Desulforudis 471826 1345 1 Candidatus Desulforudis audaxviator 471827 1334 0 species 1 2 0 genus 2 Thermincola 278993 1882 1880 863643 Thermincola potens 1 0 species 5 Syntrophomonadaceae 1753 68298 family 1 2 0 genus 0 11 1 658 129001 Syntrophothermus 2 0 species 86170 647 1 Syntrophothermus lipocalidus 2 Syntrophomonas 1093 862 0 3 1 genus species 0 863 1090 1 Syntrophomonas wolfei 267776 31979 Clostridiaceae 41 family 1 0 882 2025 0 1 genus 1485 251596 Clostridium 30 0 species 8110 1513 1 Clostridium tetani species 0 Clostridium aceticum 1 84022 2992 species 0 1534 5648 1 Clostridium kluyveri 0 species 1 Clostridium formicaceticum 1497 2634 species 0 1 Clostridium cochlearium 3323 1494 1 Clostridium cellulovorans 7092 1493 0 species 1 Clostridium taeniosporum 394958 5183 0 species 0 species Clostridium acetobutylicum 1 1488 3059 23392 1491 1 Clostridium botulinum species 0 species 0 8412 1501 1 Clostridium pasteurianum 0 species 5534 169679 Clostridium saccharobutylicum 1 Clostridium baratii 1 1561 7505 0 species species 0 238834 3058 Clostridium estertheticum 1 84023 4411 Clostridium autoethanogenum 1 species 0 4461 1548 1 Clostridium scatologenes 0 species 0 species 1 Clostridium novyi 3324 1542 1 Clostridium chauvoei 46867 4273 species 0 1 Clostridium beijerinckii 10062 1520 species 0 8140 36745 1 Clostridium saccharoperbutylacetonicum 0 species 0 species Clostridium sporogenes 1 3392 1509 0 species Clostridium bornimense 1 1216932 4942 species 0 1538 3496 Clostridium ljungdahlii 1 1 Clostridium argentinense 4049 29341 species 0 0 no rank 2 70507 2614128 species 0 7434 755731 Clostridium sp. BNL1100 1 1042156 63073 Clostridium sp. SY8519 1 0 species 0 species Clostridium carboxidivorans 1 4318 217159 1502 16929 Clostridium perfringens 1 species 0 Clostridium butyricum 1 1492 18394 species 0 0 species 1 Clostridium tyrobutyricum 2931 1519 genus 0 1 Mordavella 520 1981033 2 Geosporobacter 4369 390805 1 5 0 genus species 0 Geosporobacter ferrireducens 1 4364 1424294 genus 1 44 0 4 Candidatus Arthromitus 49082 3955 3911 2638829 3 0 no rank 0 species 1354 1508644 Candidatus Arthromitus sp. SFB-mouse-NL 1 0 species Candidatus Arthromitus sp. SFB-rat-Yit 1 1041504 1049 49118 1508 1 Candidatus Arthromitus sp. SFB-mouse 0 species 1 14 0 genus Alkaliphilus 3 114627 6454 species 0 1 Alkaliphilus oremlandii 461876 2738 species 0 Alkaliphilus metalliredigens 1 3702 208226 61325 2304686 12 family 0 0 2 1 genus 2 Mageeibacillus 3493 1637257 0 species 1 Mageeibacillus indolicus 884684 3491 0 genus 3750 2304691 1 0 species 1510 3750 [Clostridium] stercorarium 1 genus 1 0 346 Ruminiclostridium 2 6860 1508657 [Clostridium] cellulolyticum 1 6514 1521 0 species 2305130 27181 1 no rank 0 species 0 1834198 27181 Ruminiclostridium sp. KB18 1 genus 0 4945 2304693 1 0 species 1 [Clostridium] thermosuccinogenes 84032 4945 1 0 5 genus 236752 2012 2 Fastidiosipila Fastidiosipila sanguinis 1 2007 236753 species 0 13084 2304692 3 genus 0 species 0 3077 1677857 1 Herbivorax saccincola species 0 288965 5561 1 [Clostridium] clariflavum 0 species 1515 4446 1 Ruminiclostridium thermocellum 46131 186806 5 Eubacteriaceae 1 46 0 family 33951 2948 2 Acetobacterium genus 0 8 1 species 0 33952 2940 1 Acetobacterium woodii 1 1111 0 genus 1730 43137 Eubacterium 2 Eubacterium limosum 1 42026 1736 0 species Symbiobacteriaceae 3 2042 543349 0 3 1 family 7 0 1 genus 2 Symbiobacterium 2733 2039 species 0 2032 2734 1 Symbiobacterium thermophilum Ruminococcaceae 13 541000 1975198 504 0 1 family genus 75 0 1 273110 946234 2 Flavonifractor Flavonifractor plautii 1 273035 292800 0 species 1 0 3511 genus 216851 1606648 Faecalibacterium 2 853 1603137 Faecalibacterium prausnitzii 1 species 0 1890281 4 1 Herbivorax 0 genus 1 6826 552397 0 no rank species 0 29343 6826 1 [Clostridium] cellulosi 2 Ethanoligenens 253238 9761 genus 0 23 1 253239 9738 1 Ethanoligenens harbinense 0 species 15060 2305133 1 0 no rank 0 species 15060 1572656 Ruminococcaceae bacterium CPB6 1 3 Ruminococcus 1263 63285 1 149 0 genus Ruminococcus albus 1 15939 1264 0 species 1 Ruminococcus bicirculans 1160721 47197 0 species 9 230487 538999 0 no rank 1392389 49516 Intestinimonas 2 genus 801 0 1 0 species 1297617 48715 1 Intestinimonas butyriciproducens 1 2717089 167844 genus 0 0 species 2086584 167844 1 Mordavella sp. Marseille-P3756 family 0 539000 1117 2 1117 73918 2 Thermaerobacter 1 0 9 genus 0 species 73919 1108 Thermaerobacter marianensis 1 543314 12010 Clostridiales Family XIII. Incertae Sedis 4 1 0 26 family Mogibacterium 2 86331 3984 genus 0 10 1 species 0 3974 114527 Mogibacterium diversum 1 0 species 8000 143393 [Eubacterium] sulci 1 186804 224575 12 Peptostreptococcaceae 354 0 1 family 205010 1870884 Clostridioides 2 genus 0 186 1 0 species 1496 204824 Clostridioides difficile 1 2 0 1 genus 2 Paeniclostridium 1849828 6887 1 Paeniclostridium sordellii 6885 1505 species 0 44259 4316 2 Filifactor 1 15 0 genus 143361 4301 1 Filifactor alocis species 0 genus 1 0 13 186831 2604 Acetoanaerobium 2 2591 1511 Acetoanaerobium sticklandii 1 species 0 genus 1 3 0 1481960 3368 2 Peptoclostridium 1731 3365 Peptoclostridium acidaminophilum 1 0 species 2036 1411023 1 no rank 0 species 0 2081703 2036 Peptostreptococcaceae bacterium oral taxon 929 1 family 1 5366 0 5366783 186803 Lachnospiraceae 27 genus 0 1 288927 2569097 39488 288927 1 [Eubacterium] hallii species 0 2 Herbinix 17759 1663717 genus 2 0 1 1 Herbinix luporum 17757 1679721 species 0 genus 1 0 109 830 55460 3 Butyrivibrio 0 species 1 Butyrivibrio proteoclasticus 43305 28803 species 0 185008 26548 Butyrivibrio hungatei 1 genus 1 0 14 2039240 9536 2 Anaerotignum species 0 9522 28446 1 Anaerotignum propionicum 2514734 186928 2 no rank 0 0 species 712991 40082 Lachnospiraceae bacterium oral taxon 500 1 species 0 1 [Eubacterium] rectale 2474652 39491 572511 517712 3 Blautia genus 229 0 1 1 Blautia hansenii 1322 355960 species 0 no rank 0 1 2648079 161523 Blautia sp. YL58 1 1796616 161523 species 0 genus 0 1 28050 169007 0 species 39485 169007 1 [Eubacterium] eligens genus 1 0 122 263037 207244 Anaerostipes 2 649756 262915 1 Anaerostipes hadrus species 0 841 607169 2 Roseburia 76 0 1 genus Roseburia hominis 1 607093 301301 0 species genus 1 1354 0 Lachnoclostridium 4 1506553 412043 species 0 173260 1871021 1 Lachnoclostridium phocaeense no rank 0 1 2608895 212769 0 species 1834196 212769 Lachnoclostridium sp. YL32 1 66219 24660 1 Lachnoclostridium phytofermentans species 0 69517 2719231 1 genus 0 69517 84030 1 [Clostridium] saccharolyticum species 0 427671 2719313 1 0 genus 208479 427671 [Clostridium] bolteae 1 0 species 2 0 1 genus 2 Cellulosilyticum 8845 698776 0 species 8843 29360 1 Cellulosilyticum lentocellum 31984 2275 3 Heliobacteriaceae family 0 5 1 2 Heliobacterium 2697 2270 0 13 1 genus Heliobacterium modesticaldum 1 35701 2257 0 species Halanaerobiales 12 53433 7025 0 4 1 order Halobacteroidaceae 5 53434 3177 0 24 1 family genus 1 0 7 Acetohalobium 2 28186 1886 28187 1879 1 Acetohalobium arabaticum species 0 2 Halobacteroides 1267 42417 1 24 0 genus 0 species 42422 1243 Halobacteroides halobius 1 6 Halanaerobiaceae 3844 972 0 15 1 family 1 7 0 genus 1273 32636 Halothermothrix 2 species 0 31909 1266 1 Halothermothrix orenii 3 Halanaerobium 2556 2330 genus 1 0 18 0 species 1203 2331 1 Halanaerobium praevalens 0 species 656519 1335 Halanaerobium hydrogeniformans 1 2624 2770089 3 order 0 1 1539 2770092 family 0 1 1539 499228 0 genus species 0 1539 499229 Tepidanaerobacter acetatoxydans 1 2770093 1085 2 family 0 291988 1085 2 Thermosediminibacter genus 0 17 1 1 Thermosediminibacter oceani 291990 1068 0 species 0 2 1 order Natranaerobiales 4 1274 485256 485255 1272 3 Natranaerobiaceae 1 0 2 family 0 13 1 genus 375928 1270 Natranaerobius 2 375929 1257 1 Natranaerobius thermophilus species 0 1 0 32 order Thermoanaerobacterales 37 68295 40718 3 Thermoanaerobacterales Family IV. Incertae Sedis 1341 543372 family 0 7 1 genus 0 2 1 1334 252965 Mahella 2 species 0 252966 1332 Mahella australiensis 1 family 1 57 0 186814 18179 19 Thermoanaerobacteraceae genus 0 642 1 12120 1754 Thermoanaerobacter 9 Thermoanaerobacter brockii 1 29323 1333 species 0 0 no rank 3031 2636821 2 1472 399726 1 Thermoanaerobacter sp. X514 species 0 species 0 Thermoanaerobacter sp. X513 1 1559 573062 2325 1441 Thermoanaerobacter kivui 1 0 species species 0 583357 1294 1 Thermoanaerobacter mathranii 1353 108150 Thermoanaerobacter italicus 1 0 species species 0 Thermoanaerobacter pseudethanolicus 1 1333 496866 1 Thermoanaerobacter wiegelii 1693 46354 species 0 2 Caldanaerobacter 249529 1533 genus 1 16 0 0 species 1 Caldanaerobacter subterraneus 911092 1517 129957 1452 Carboxydothermus 2 genus 1 0 1 Carboxydothermus hydrogenoformans 1 1451 129958 species 0 4 42857 2160 0 no rank genus 1 0 1 42837 583 Ammonifex 2 42838 582 Ammonifex degensii 1 0 species Moorella 2 1577 44260 1 0 10 genus species 0 Moorella thermoacetica 1 1567 1525 genus 0 1 140458 857 species 0 Thermacetogenium phaeum 1 85874 857 family 0 31 1 13 Thermoanaerobacterales Family III. Incertae Sedis 543371 20787 30 0 1 genus 3 Thermoanaerobacterium 28895 5556 species 0 3665 1517 Thermoanaerobacterium thermosaccharolyticum 1 species 0 1 Thermoanaerobacterium xylanolyticum 29329 1861 9 Caldicellulosiruptor 15200 44000 1 404 0 genus 0 species 52766 1860 Caldicellulosiruptor lactoaceticus 1 Caldicellulosiruptor obsidiansis 1 717609 1552 species 0 0 species 1 Caldicellulosiruptor bescii 2106 31899 44001 1933 1 Caldicellulosiruptor saccharolyticus 0 species species 0 1 Caldicellulosiruptor kristjanssonii 2050 52765 Caldicellulosiruptor owensensis 1 1704 55205 0 species 0 species 413888 1996 Caldicellulosiruptor hydrothermalis 1 0 species 1 Caldicellulosiruptor kronotskyensis 413889 1595 family 0 1 227387 379 1 379 227388 genus 0 Thermodesulfobium narugense 1 379 184064 species 0 no rank 0 2618 33974 2 genus 0 8 1 Ndongobacter 2 2618 1930845 0 species 1 Ndongobacter massiliensis 2610 1871025 362 1783270 6704583 clade 0 771 456828 2 phylum 0 771 456826 Candidatus Cloacimonas 2 genus 0 1 1 1 Candidatus Cloacimonas acidaminovorans 456827 770 0 species 3 1648 65842 phylum 0 0 class 3 204430 1648 1648 218872 3 Fibrobacterales order 6 0 1 family 0 2 1642 204431 1 0 1 genus Fibrobacter 2 832 1642 0 species 1641 833 1 Fibrobacter succinogenes 0 phylum 8 1741 142182 class 1 9 0 1741 219685 8 Gemmatimonadetes 219686 1732 Gemmatimonadales 7 1 0 42 order family 1 0 7 Gemmatimonadaceae 6 1690 219687 3 Gemmatimonas 793 173479 1 8 0 genus 0 species 173480 404 Gemmatimonas aurantiaca 1 0 species Gemmatimonas phototrophica 1 1379270 381 1 4 0 genus Gemmatirosa 2 1706036 890 861299 886 1 Gemmatirosa kalamazoonesis 0 species clade 0 6700423 68336 349 9475 1090 21 phylum 0 21 Chlorobia 9475 191410 class 22 0 1 order 1 0 59 Chlorobiales 20 9453 191411 family 1 0 61 191412 9394 Chlorobiaceae 19 genus 1 0 18 Prosthecochloris 5 1101 2392 0 no rank 1769 2632826 3 0 species Prosthecochloris sp. GSB1 1 281093 532 0 species 1868325 562 Prosthecochloris sp. CIB 2401 1 species 0 Prosthecochloris sp. HL-130-GSB 1 675 1974213 1 Prosthecochloris aestuarii 1102 605 species 0 2292 256319 Chlorobaculum 4 genus 0 58 1 species 0 Chlorobaculum parvum 1 274539 755 species 0 1097 737 1 Chlorobaculum tepidum 0 species 742 274537 Chlorobaculum limnaeum 1 274493 4117 7 no rank 0 1091 2532 5 Chlorobium genus 10 0 1 1 Chlorobium limicola 1092 662 species 0 1 Chlorobium phaeobacteroides 1096 1181 species 0 337090 279 1 Chlorobium chlorochromatii 0 species 1094 400 1 Chlorobium phaeovibrioides 0 species 0 genus 2 1585 1099 0 species Pelodictyon phaeoclathratiforme 1 898 34090 1100 687 1 Pelodictyon luteolum 0 species Chloroherpeton 2 100715 532 genus 1 0 1 0 species Chloroherpeton thalassium 1 100716 531 320 Bacteroidetes 976 6688806 1 0 41 phylum 0 33 1 class 14 Chitinophagia 1853228 10948 13 Chitinophagales 1853229 10915 order 1 0 18 family 0 30 1 10897 563835 12 Chitinophagaceae genus 22 0 1 Filimonas 2 649460 1936 0 species 477680 1914 Filimonas lacunae 1 3 Niabella 379899 2873 genus 1 9 0 446683 1185 Niabella soli 1 species 0 species 0 1 Niabella ginsenosidivorans 1679 1176587 genus 0 1 754 398041 1 Flavisolibacter tropicus 1492898 754 species 0 genus 0 354354 1463 1 1 Niastella koreensis 354356 1463 species 0 1 2 0 genus 3 Chitinophaga 79328 2940 79329 2080 Chitinophaga pinensis 1 species 0 0 species 2029983 858 1 Chitinophagaceae bacterium 13 genus 0 901 1769012 1 2636138 901 1 0 no rank Arachidicoccus sp. BS20 1 901 1850526 0 species 0 124 1 order Bacteroidetes Order II. Incertae sedis 7 1100069 2660 family 47 0 1 563843 2536 Rhodothermaceae 6 29548 1168 Rhodothermus 2 genus 1 8 0 Rhodothermus marinus 1 29549 1160 species 0 146918 643 2 Salinibacter genus 1 4 0 species 0 146919 639 Salinibacter ruber 1 1 678 1196022 no rank 0 1779382 678 Rhodothermaceae bacterium RA 1 species 0 68 Bacteroidia 200643 6511036 1 0 85 class 10 Marinilabiliales 5436 1970189 1 0 1 order 1795 1471398 Prolixibacteraceae 3 1 2 0 family 14 0 1 genus 1471399 1793 Draconibacterium 2 0 species 1 Draconibacterium orientale 1168034 1779 family 0 1 1 1573805 1549 2 Marinifilaceae 1548 2060722 1 genus 0 species 0 Marinifilaceae bacterium SPP2 1 1717717 1548 1295 558415 2 0 family 1295 1193324 Alkalitalea 2 1 4 0 genus species 0 889453 1291 1 Alkalitalea saponilacus family 0 2 1970190 796 0 1 1 genus 2 Salinivirga 1970191 796 0 species 1307839 795 Salinivirga cyanobacteriivorans 1 Bacteroidales 57 6505515 171549 679 0 1 order family 58 0 1 Tannerellaceae 7 2005525 2036717 genus 1 36 0 3 Parabacteroides 2030645 375288 Parabacteroides distasonis 1 965687 823 species 0 1064922 2649774 1 0 no rank species 0 1 Parabacteroides sp. CT06 2025876 1064922 genus 1 16 0 3 Tannerella 195950 6014 no rank 0 1611 2620507 1 Tannerella sp. oral taxon HOT-286 1 712710 1611 0 species 1 Tannerella forsythia 28112 4387 species 0 3 Barnesiellaceae 53075 2005519 family 0 10 1 genus 36 0 1 53065 397864 2 Barnesiella Barnesiella viscericola 1 397865 53029 species 0 0 family 5 7699 2005520 Proteiniphilum 2 294702 3312 0 2 1 genus 0 species 1642647 3310 Proteiniphilum saccharofermentans 1 genus 0 1 2128 307628 Petrimonas mucosa 1 1642646 2128 0 species 2259 1784836 2 Fermentimonas genus 0 1 1 Fermentimonas caenicola 1 1562970 2258 species 0 no rank 0 333046 431720 5 0 1 1 genus 2 Candidatus Azobacteroides 953 511434 Candidatus Azobacteroides pseudotrichonymphae 1 511435 952 species 0 0 genus 3 430767 909656 species 0 247599 821 1 Bacteroides vulgatus species 0 Bacteroides salanitronis 1 21887 376805 0 species 357276 161281 Bacteroides dorei 1 family 0 1853231 20317 1 20317 283168 1 0 genus species 0 20317 28118 Odoribacter splanchnicus 1 5 Rikenellaceae 45386 171550 family 1 0 6 44160 239759 2 Alistipes 43 0 1 genus 0 species 44117 214856 Alistipes finegoldii 1 0 5 1 genus 1220 1611681 2 Mucinivorans 1433126 1215 Mucinivorans hirudinis 1 0 species 4 Porphyromonadaceae 4098 171551 1 8 0 family Porphyromonas 3 836 4090 genus 1 5 0 0 species 1 Porphyromonas asaccharolytica 980 28123 1 Porphyromonas gingivalis 3105 837 species 0 11 Bacteroidaceae 815 3817348 family 1 0 37 0 35021 1 genus 3817311 816 Bacteroides 10 Bacteroides helcogenes 1 48523 290053 species 0 species 0 1 Bacteroides caecimuris 1796613 222029 Bacteroides ovatus 1 28116 1310147 species 0 species 0 47678 64178 1 Bacteroides caccae 818 199526 1 Bacteroides thetaiotaomicron species 0 Bacteroides cellulosilyticus 1 246787 369007 0 species 1503835 817 1 Bacteroides fragilis species 0 0 species 28119 30232 Bacteroides zoogleoformans 1 species 0 28113 34813 1 Bacteroides heparinolyticus 2046 2005523 Paludibacteraceae 3 0 4 1 family 346096 2042 2 Paludibacter genus 1 9 0 2033 185300 Paludibacter propionicigenes 1 0 species 1 1248 185291 no rank 0 species 0 1400053 1248 1 Bacteroidales bacterium CF 7 0 1 family 85182 171552 11 Prevotellaceae 838 85175 10 Prevotella 90 0 1 genus 839 3944 Prevotella ruminicola 1 0 species species 0 76123 1481 Prevotella enoeca 1 52227 2600 Prevotella dentalis 1 0 species 1 Prevotella melaninogenica 28132 2952 0 species 589436 2538 Prevotella fusca 1 species 0 no rank 0 1 2638335 1436 0 species 1 Prevotella sp. oral taxon 299 1436 652716 species 0 28129 2150 Prevotella denticola 1 Prevotella jejuni 1 1177574 2420 species 0 0 species 65564 28131 1 Prevotella intermedia 1937959 1750 Saprospiria 7 16 0 1 class 6 Saprospirales 1936988 1734 order 1 0 8 89374 431 3 Saprospiraceae 1 0 1 family 1007 430 2 Saprospira genus 1 20 0 1008 410 1 Saprospira grandis species 0 2 1937961 1295 0 family genus 0 7 1 2 Haliscomenobacter 2349 1295 species 0 1 Haliscomenobacter hydrossis 1288 2350 55 Cytophagia 34743 768503 class 0 95 1 order 132 0 1 34648 768507 Cytophagales 54 family 0 4 1501348 302 genus 1 0 1 2 Candidatus Amoebophilus 281119 178 1 Candidatus Amoebophilus asiaticus 177 281120 species 0 2 Candidatus Cardinium 124 273135 genus 0 4 1 no rank 0 1 120 2641185 120 249402 Cardinium endosymbiont of Encarsia pergandiella 1 0 species 3 Persicobacteraceae 1564 1853234 2 0 1 family genus 1 0 9 59740 1562 Persicobacter 2 1 1553 2664020 0 no rank species 0 1 Persicobacter sp. JZB09 1553 1085624 1084 1937968 Bernardetiaceae 2 family 1 8 0 1937972 1076 1 0 genus 0 species 1 Bernardetia litoralis 999 1076 2762301 834 1 0 family 1 834 869806 0 genus 0 species 1006 834 Marivirga tractuosa 1 family 1 0 20 9310 89373 15 Cytophagaceae genus 1 0 44 978 1282 Cytophaga 2 985 1238 1 Cytophaga hutchinsonii 0 species 120831 1202 Dyadobacter 2 genus 0 2 1 species 0 94254 1200 1 Dyadobacter fermentans 105 967 2 Runella genus 1 0 9 106 958 1 Runella slithyformis 0 species 1 0 25 genus 4459 107 6 Spirosoma 699 564064 Spirosoma rigui 1 0 species Spirosoma sp. HA7 1 2057025 873 0 species 0 species Spirosoma aerolatum 1 1141 1211326 species 0 1379870 954 1 Spirosoma radiotolerans Spirosoma montaniterrae 1 1178516 767 0 species 745 319458 1 genus 0 1 Leadbetterella byssophila 316068 745 species 0 genus 0 1 861914 635 1 635 2620963 0 no rank Fibrella sp. ES10-3-2-2 1 635 1834519 species 0 0 4 1 family Cyclobacteriaceae 8 4777 563798 genus 1 0 1 2 Algoriphagus 246875 641 1 Algoriphagus sp. M8-2 1727163 640 0 species Cyclobacterium 3 68288 1955 genus 9 0 1 812 104 1 Cyclobacterium marinum species 0 species 0 1 Cyclobacterium amurskyense 1134 320787 1 1359 390846 genus 0 species 0 1359 390884 Echinicola vietnamensis 1 genus 0 232244 818 1 species 0 1 Belliella baltica 232259 818 16 Hymenobacteraceae 1853232 13569 family 0 42 1 120 0 1 genus 8 Hymenobacter 89966 8677 species 0 1446467 1476 1 Hymenobacter swuensis 5 2615202 5937 no rank 0 1356852 1262 Hymenobacter sp. APR13 1 0 species 1484118 1379 1 Hymenobacter sp. PAMC 26628 species 0 species 0 1385664 1356 Hymenobacter sp. DG25B 1 1484116 1086 Hymenobacter sp. PAMC 26554 1 species 0 species 0 1385663 854 1 Hymenobacter sp. DG25A species 0 1 Hymenobacter sedentarius 1144 1411621 1 5 0 genus 3 Pontibacter 323449 2314 1204 400092 1 Pontibacter korlensis species 0 0 species Pontibacter akesuensis 1 1105 388950 Rufibacter 4 2536 1379908 genus 6 0 1 species 0 512763 1034 1 Rufibacter tibetensis 1496 2639626 2 no rank 0 888 1379910 Rufibacter sp. DG31D 1 0 species 608 1379909 1 Rufibacter sp. DG15C 0 species 3076 200667 4 Flammeovirgaceae family 9 0 1 genus 20 0 1 Flammeovirga 2 59739 1695 no rank 0 1675 2637820 1 1191459 1675 Flammeovirga sp. MY04 1 species 0 0 no rank 1 1372 340671 Flammeovirgaceae bacterium 311 1 1257021 1372 species 0 24 Sphingobacteriia 117747 18764 class 0 29 1 1 32 0 order 23 Sphingobacteriales 18735 200666 1 0 27 family 84566 18703 Sphingobacteriaceae 22 0 no rank 1 84568 1147 0 species 1986952 1147 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 1104 929509 Solitalea 2 4 0 1 genus 1 Solitalea canadensis 1100 995 species 0 6 0 1 genus Pedobacter 6 84567 6583 1283 363852 1 Pedobacter ginsengisoli species 0 species 0 Pedobacter steynii 1 1445 430522 0 species 1 Pedobacter heparinus 984 1153 1600 2628915 1 no rank 0 1600 1727164 Pedobacter sp. PACM 27299 1 0 species species 0 Pedobacter cryoconitis 1 1096 188932 0 11 1 genus 3218 423349 4 Mucilaginibacter 1234841 973 Mucilaginibacter sp. BJC16-A31 1 species 0 1 2617802 1133 no rank 0 species 0 1 Mucilaginibacter sp. PAMC 26640 1300914 1133 1 Mucilaginibacter gotjawali 1101 1550579 0 species 1 0 1 genus 2 Pseudopedobacter 1239 1649482 species 0 Pseudopedobacter saltans 1 1238 151895 genus 1 42 0 5385 28453 6 Sphingobacterium 0 no rank 4 2609468 4286 species 0 1933220 1179 Sphingobacterium sp. B29 1 0 species 1 Sphingobacterium sp. G1-14 1274 2003121 743722 991 1 Sphingobacterium sp. 21 0 species 842 1538644 1 Sphingobacterium sp. ML3W 0 species Sphingobacterium mizutaii 1 1010 1057 species 0 108864 117743 Flavobacteriia 144 class 1 0 60 order 1 93 0 108804 200644 143 Flavobacteriales 1755828 253 2 0 family 1755829 253 2 Ichthyobacterium 1 1 0 genus species 0 242600 252 Ichthyobacterium seriolicida 1 69982 49546 102 Flavobacteriaceae family 866 0 1 1 0 1 genus 999 143222 Salegentibacter 2 998 2633436 1 0 no rank 1 Salegentibacter sp. T436 1729720 998 0 species Gramella 5 292691 3173 4 0 1 genus species 0 Gramella forsetii 1 411153 853 0 species 1 Gramella sp. LPB0144 1913577 623 species 0 811 1486245 Gramella flava 1 species 0 1 Gramella sp. SH35 2126553 882 1 1090 112040 0 genus 1 Zobellia galactanivorans 63186 1090 0 species 1 996 178469 genus 0 1 Arenibacter algicola 616991 996 0 species 1 702 1518147 genus 0 species 0 Wenyingzhuangia fucanilytica 1 702 1790137 Robiginitalea 2 252306 573 genus 13 0 1 252307 560 Robiginitalea biformata 1 0 species 1 56 0 genus 1016 12033 Capnocytophaga 15 0 species 28189 797 Capnocytophaga cynodegmi 1 1 Capnocytophaga haemolytica 45243 441 0 species Capnocytophaga gingivalis 1 1017 518 species 0 0 species 1019 1370 Capnocytophaga sputigena 1 1267 1848904 1 Capnocytophaga stomatis 0 species 1 Capnocytophaga ochracea 637 1018 species 0 0 species 800 28188 Capnocytophaga canimorsus 1 species 0 1 Capnocytophaga leadbetteri 327575 1506 6 4641 2640652 no rank 0 Capnocytophaga sp. H4358 1 1945658 730 species 0 1 Capnocytophaga sp. ChDC OS43 723 209053 0 species 0 species Capnocytophaga sp. oral taxon 878 1 1316596 1371 1705617 596 1 Capnocytophaga sp. oral taxon 323 0 species 1945657 609 1 Capnocytophaga sp. H2931 0 species species 0 1316593 612 1 Capnocytophaga sp. oral taxon 864 0 genus 1151 1649495 1 1 2622645 1151 no rank 0 1936081 1151 Seonamhaeicola sp. S2-3 1 0 species 1 699 153265 genus 0 species 0 Aequorivita sublithincola 1 101385 699 1 10 0 genus 5 Nonlabens 363408 2220 Nonlabens dokdonensis 1 328515 718 0 species species 0 Nonlabens sediminis 1 422 319236 2 1070 2615035 0 no rank 488 1476901 Nonlabens sp. MIC269 1 0 species 1 Nonlabens sp. MB-3u-79 2058134 582 species 0 104264 2877 4 Cellulophaga genus 1 0 5 species 0 979 957 Cellulophaga lytica 1 0 species Cellulophaga algicola 1 780 59600 1135 76594 1 Cellulophaga baltica species 0 0 genus 775 225842 2 2 775 2644710 0 no rank 1 Formosa sp. Hel1_33_131 1336794 453 species 0 322 1336795 1 Formosa sp. Hel3_A1_48 0 species genus 0 1 393005 860 2069432 860 1 Tamlana sp. UJ94 0 species 1 1204360 615 0 genus 762954 615 Siansivirga zeaxanthinifaciens 1 0 species 0 1 1 genus 389486 607 2 Sediminicola 0 no rank 1 2648869 606 0 species Sediminicola sp. YIK13 1 1453352 606 Lutibacter 2 358023 908 1 0 15 genus species 0 893 1622118 1 Lutibacter profundi Dokdonia 4 326319 1522 7 0 1 genus 2 2615033 976 no rank 0 species 0 313590 477 1 Dokdonia sp. MED134 Dokdonia sp. 4H-3-7-5 1 499 983548 0 species species 0 326320 539 1 Dokdonia donghaensis 0 genus 467 216431 1 species 0 Croceibacter atlanticus 1 467 313588 1125 1209327 1 0 genus 0 species 1 Flavivirga eckloniae 1803846 1125 104267 2989 Tenacibaculum 5 0 7 1 genus 107401 651 1 Tenacibaculum maritimum species 0 586 1850252 1 Tenacibaculum todarodis species 0 Tenacibaculum jejuense 1 889 584609 0 species species 0 1 Tenacibaculum dicentrarchi 669041 856 genus 1 0 1 2967 252356 Maribacter 5 species 0 1 Maribacter cobaltidurans 1178778 623 2343 2615042 3 no rank 0 species 0 1 Maribacter sp. HTCC2170 313603 859 species 0 581 1836467 1 Maribacter sp. T28 1 Maribacter sp. 1_2014MBL_MicDiv 1644130 903 species 0 genus 0 1 83612 683 0 species 683 57029 Psychroflexus torquis 1 genus 0 870 2700084 1 1850246 870 1 Lutibacter sp. LPB0138 species 0 genus 0 1176327 492 1 1 492 2636237 0 no rank species 0 2094025 492 1 Aureitalea sp. RR4-38 genus 0 93 1 Myroides 5 76831 2894 0 species 930 76832 1 Myroides odoratimimus 480520 472 Myroides profundi 1 0 species no rank 0 2 2642485 1399 688 1458492 1 Myroides sp. ZB35 0 species 1583100 711 Myroides sp. A21 1 species 0 no rank 0 1990 61432 2 1 Flavobacteriaceae bacterium UJ101 1150389 944 species 0 1 Flavobacteriaceae bacterium 3519-10 531844 1046 0 species 286104 1251 Winogradskyella 3 genus 0 6 1 1245 2615021 2 0 no rank Winogradskyella sp. PG-2 1 754409 667 species 0 0 species 1 Winogradskyella sp. J14-2 578 1936080 genus 0 1 1104 261827 Algibacter alginicilyticus 1 1736674 1104 0 species 2 Olleya 749 336276 genus 1 0 1 748 2615019 1 no rank 0 0 species 748 2058135 Olleya sp. Bg11-27 1 237 9893 Flavobacterium 9 9 0 1 genus 963 96345 1 Flavobacterium psychrophilum 0 species 0 species 1560 996 Flavobacterium columnare 1 1763534 667 Flavobacterium crassostreae 1 0 species 1 Flavobacterium gilvum 1496 1492737 0 species 1 Flavobacterium commune 1306519 1102 0 species species 0 Flavobacterium branchiophilum 1 542 55197 0 species 986 2685 Flavobacterium johnsoniae 1 species 0 312277 869 Flavobacterium indicum 1 1263 111500 2 genus 0 532 516051 1 Muricauda lutaonensis species 0 species 0 1 Muricauda ruestringensis 111501 731 genus 1 20 0 Lacinutrix 4 291183 2281 0 species 1 Lacinutrix venerupis 1486034 791 1470 2647285 2 0 no rank 0 species 983544 703 Lacinutrix sp. 5H-3-7-4 1 species 0 767 2057808 Lacinutrix sp. Bg11-31 1 Polaribacter 6 52959 5380 genus 0 22 1 0 no rank 3019 196858 3 1529069 1001 1 Polaribacter sp. BM10 species 0 1169 2058137 1 Polaribacter sp. ALD11 0 species species 0 1 Polaribacter sp. MED152 313598 849 species 0 1774273 1264 1 Polaribacter vadi Polaribacter reichenbachii 1 996801 1075 species 0 1 3 0 genus 918 417127 Zunongwangia 2 species 0 398743 915 Zunongwangia profunda 1 2 1853230 769 0 family 2 Fluviicola 769 332102 genus 1 0 21 0 species 1 Fluviicola taffensis 191579 748 2762318 34690 21 0 family 1 1013 522 genus 0 522 1014 Weeksella virosa 1 0 species genus 1 5 0 Riemerella 2 34084 1569 0 species 34085 1564 Riemerella anatipestifer 1 Elizabethkingia 6 308865 9897 genus 1 0 39 1756149 1473 1 Elizabethkingia genomosp. 3 species 0 238 1954 Elizabethkingia meningoseptica 1 0 species 1 Elizabethkingia anophelis 1117645 3028 0 species species 0 1 Elizabethkingia miricola 172045 2151 Elizabethkingia genomosp. 4 1 1252 1756150 species 0 genus 1 0 38 Ornithobacterium 2 28250 8608 0 species Ornithobacterium rhinotracheale 1 8570 28251 14094 2782232 10 0 no rank Chryseobacterium 9 59732 13157 genus 1 133 0 0 species 1689 1324352 Chryseobacterium gallinarum 1 species 0 1265445 1143 1 Chryseobacterium camelliae 558152 1132 Chryseobacterium piperi 1 0 species 0 species 253 3317 Chryseobacterium indologenes 1 Chryseobacterium glaciei 1 1525 1685010 species 0 no rank 0 4218 2593645 3 Chryseobacterium sp. T16E-39 1 2015076 1792 0 species 1316 878220 Chryseobacterium sp. StRB126 1 0 species 1721091 1110 1 Chryseobacterium sp. IHB B 17019 species 0 genus 0 1 2782228 937 0 species 937 536441 1 Chryseobacterium taklimakanense 2 1333713 662 family 0 1 0 1 genus 267986 662 Owenweeksia 2 Owenweeksia hongkongensis 1 253245 661 species 0 no rank 0 3 408 313602 1 1 0 genus 77 1940138 2 Candidatus Walczuchella 1415657 76 1 Candidatus Walczuchella monophlebidarum 0 species 0 genus 1 336809 331 331 336810 Candidatus Sulcia muelleri 1 species 0 39782 1947 10 Blattabacteriaceae 1 1 0 family Blattabacterium 9 34098 1946 genus 0 36 1 Blattabacterium cuenoti 1 195 1653831 0 species 1423 2647581 6 no rank 0 126 367806 1 Blattabacterium sp. (Blatta orientalis) species 0 species 0 185 1186051 Blattabacterium sp. (Blaberus giganteus) 1 206 367488 Blattabacterium sp. (Periplaneta americana) 1 species 0 624186 427 Blattabacterium sp. (Blattella germanica) 1 species 0 0 species 300 1316444 Blattabacterium sp. (Nauphoeta cinerea) 1 species 0 39768 179 1 Blattabacterium sp. (Mastotermes darwiniensis) 164514 292 Blattabacterium punctulatus 1 0 species 2142 1134404 8 phylum 0 4 0 1 class 2142 795747 Ignavibacteria 8 order 5 0 1 2138 795748 Ignavibacteriales 7 795749 1172 Ignavibacteriaceae 3 family 10 0 1 0 1 1 genus 2 Ignavibacterium 1162 795750 species 0 1161 591197 1 Ignavibacterium album 1 2 0 family 961 1334117 Melioribacteraceae 3 genus 4 0 1 Melioribacter 2 1134403 959 Melioribacter roseus 1 1134405 955 species 0 Proteobacteria 2000 1248904 1224 phylum 470 0 1 5 0 1 class 13 Oligoflexia 1553900 4042 213481 2507 Bdellovibrionales 5 order 1 9 0 213483 2498 Bdellovibrionaceae 4 1 10 0 family Bdellovibrio 3 2488 958 genus 1 0 4 0 species 959 2177 1 Bdellovibrio bacteriovorus Bdellovibrio exovorus 1 307 453816 species 0 2024979 1530 Bacteriovoracales 7 1 5 0 order 761 263369 3 Bacteriovoracaceae 1 0 9 family 752 146784 Bacteriovorax 2 0 2 1 genus 960 750 1 Bacteriovorax stolpii 0 species family 0 3 1 Halobacteriovoraceae 3 1652132 764 2 Halobacteriovorax 761 1652133 genus 0 3 1 species 0 97084 758 Halobacteriovorax marinus 1 1198 580370 5 0 class order 0 13 1 Mariprofundales 5 1198 580371 family 0 7 1 4 Mariprofundaceae 580372 1185 Mariprofundus 3 377315 1178 0 3 1 genus 0 species 1 Mariprofundus ferrinatatus 567 1921087 species 0 608 1921086 1 Mariprofundus aestuarium 0 subphylum 193 176736 68525 1 0 375 class 95147 29547 Epsilonproteobacteria 69 1712 235899 3 order 0 224467 1124 2 0 family 1124 191291 2 Nautilia genus 0 47 1 species 0 Nautilia profundicola 1 244787 1077 family 0 1 588 2795691 1 269258 588 0 genus 0 no rank 1 588 2624044 387092 588 Nitratiruptor sp. SB155-2 1 0 species 5497 0 1 order Campylobacterales 65 93060 213849 2771472 1924 4 family 0 0 7 1 genus 1567 265570 Sulfurovum 3 1 Sulfurovum lithotrophicum 206403 675 0 species 0 no rank 885 2646778 1 species 0 Sulfurovum sp. NBC37-1 1 387093 885 0 genus 269260 357 1 Nitratifractor salsuginis 1 269261 357 species 0 41 Campylobacteraceae 72294 79050 9335 0 1 family 54 0 1 genus 3741 57665 Sulfurospirillum 9 0 species 355 66821 Sulfurospirillum multivorans 1 329 194424 1 Sulfurospirillum halorespirans species 0 0 species 460 44674 Sulfurospirillum barnesii 1 species 0 1 Sulfurospirillum cavolei 366522 561 0 no rank 3 1624 2618290 1 Sulfurospirillum sp. SL2-1 558 1986224 species 0 0 species 505 1581011 1 Sulfurospirillum sp. UCH001 220622 561 1 Sulfurospirillum sp. JPD-1 species 0 65553 358 1 Sulfurospirillum deleyianum 0 species 2321108 4245 5 no rank 0 genus 0 1113 2321187 1 0 species Arcobacter sp. LPB0137 1 1850254 1113 2321207 907 1 no rank 0 species 0 944547 907 1 Arcobacter sp. L 1 7 0 genus 28196 2225 Arcobacter 3 1330 28197 1 Arcobacter butzleri species 0 888 28199 Arcobacter nitrofigilis 1 species 0 1 0 1951 genus 194 61729 Campylobacter 26 species 0 Campylobacter coli 1 19205 195 Campylobacter helveticus 1 28898 417 species 0 206 841 1 Campylobacter sputorum species 0 species 0 199 783 Campylobacter concisus 1 0 species 1 Campylobacter avium 270 522485 75658 2567 Campylobacter lanienae 1 species 0 species 0 Campylobacter fetus 1 196 2549 species 0 636 374106 Campylobacter cuniculorum 1 0 species 1 Campylobacter iguaniorum 1244531 608 0 species 1965231 1054 Campylobacter pinnipediorum 1 1 Campylobacter peloridis 488546 479 species 0 0 species Campylobacter hominis 1 76517 581 species 0 1031542 433 Campylobacter volucris 1 0 no rank 1479 2593542 4 1660076 410 Campylobacter sp. RM12175 1 0 species species 0 Campylobacter sp. RM16704 1 1500960 391 1 Campylobacter sp. RM6137 268 1660073 species 0 Campylobacter sp. RM8964 1 410 1660074 species 0 201 1553 Campylobacter lari 1 species 0 0 species 1 Campylobacter ureolyticus 520 827 species 0 1 Campylobacter insulaenigrae 471 260714 Campylobacter jejuni 1 197 23205 species 0 0 species 497724 893 Campylobacter subantarcticus 1 392 824 1 Campylobacter gracilis 0 species species 0 Campylobacter curvus 1 288 200 198 554 Campylobacter hyointestinalis 1 0 species 4 1664 2771471 family 0 15 0 1 genus 202746 1227 Sulfurimonas 3 0 species 202747 680 Sulfurimonas autotrophica 1 39766 532 1 Sulfurimonas denitrificans species 0 437 286130 1 genus 0 species 0 148813 437 1 Sulfuricurvum kujiense 72293 4925 15 Helicobacteraceae family 1 42 0 274 843 Wolinella 2 genus 1 0 2 272 844 1 Wolinella succinogenes 0 species genus 1 0 12 12 Helicobacter 4609 209 Helicobacter felis 1 214 182 0 species 37372 493 Helicobacter bilis 1 species 0 species 0 212 181 Helicobacter acinonychis 1 0 species 1 Helicobacter hepaticus 326 32025 species 0 138563 331 Helicobacter cetorum 1 76936 245 1 Helicobacter typhlonius 0 species 1 Helicobacter pylori 1818 210 0 species 0 species 1 Helicobacter himalayensis 1591088 236 species 0 1 Helicobacter mustelae 217 178 1 218 2593540 0 no rank species 0 222136 218 Helicobacter sp. MIT 01-6242 1 0 species 1 Helicobacter cinaedi 213 389 class 1 0 279 28221 81589 Deltaproteobacteria 124 Desulfovibrionales 25 24534 213115 order 1 0 340 family 0 126 1 18 Desulfovibrionaceae 21215 194924 1 2794998 1587 0 genus 880 1587 1 Desulfovibrio salexigens 0 species 0 genus 1 2582840 1164 0 species Desulfovibrio africanus 1 873 1164 genus 1 0 42 4 Pseudodesulfovibrio 3249 2035811 1 Pseudodesulfovibrio indicus 1716143 1460 species 0 Pseudodesulfovibrio profundus 1 57320 875 species 0 0 species 1 Pseudodesulfovibrio aespoeensis 872 182210 genus 43 0 1 41707 517 Lawsonia 2 species 0 29546 474 Lawsonia intracellularis 1 14572 872 9 Desulfovibrio 1 0 110 genus species 0 1075 58180 Desulfovibrio alaskensis 1 1 1471 2593640 no rank 0 0 species 1 Desulfovibrio sp. G11 631220 1471 Desulfovibrio desulfuricans 1 2477 876 0 species 901 2350 Desulfovibrio piger 1 species 0 species 0 44742 2244 1 Desulfovibrio fairfieldensis species 0 1 Candidatus Desulfovibrio trichonymphae 1725232 750 0 species 184917 1029 1 Desulfovibrio magneticus 881 3066 1 Desulfovibrio vulgaris species 0 family 1 66 0 213116 2457 4 Desulfomicrobiaceae 2391 898 Desulfomicrobium 3 genus 1 0 14 1123 899 1 Desulfomicrobium baculatum species 0 1 Desulfomicrobium orale 132132 1254 species 0 0 family 2 522 213117 2 Desulfohalobium 45662 522 23 0 1 genus species 0 45663 499 1 Desulfohalobium retbaense 0 76 1 order 213118 9376 Desulfobacterales 18 family 1 0 10 3821 213121 8 Desulfobulbaceae genus 0 1 936 53318 0 species 1 Desulfocapsa sulfexigens 65555 936 1 0 16 genus 427922 1147 2 Desulfurivibrio species 0 427923 1131 1 Desulfurivibrio alkaliphilus genus 1 5 0 893 1011 2 Desulfobulbus species 0 1006 1986146 Desulfobulbus sp. ORNL 1 genus 1 1 0 2 Desulfotalea 109168 717 84980 716 Desulfotalea psychrophila 1 0 species 9 Desulfobacteraceae 213119 5479 0 15 1 family 1102 218207 Desulfatibacillum 2 genus 1 0 1 species 0 1101 259354 1 Desulfatibacillum alkenivorans genus 0 2295 1035 1 species 0 1 Desulfobacterium autotrophicum 2296 1035 1899 896 Desulfococcus 3 1 0 26 genus species 0 Desulfococcus multivorans 1 812 897 0 species 1 Desulfococcus oleovorans 1061 181663 1 0 5 genus 1428 28222 2 Desulfobacula 28223 1423 1 Desulfobacula toluolica 0 species order 0 270 1 24 Desulfuromonadales 20377 69541 9 Desulfuromonadaceae 6657 213421 0 107 1 family genus 46 0 1 5 Pelobacter 4936 18 species 0 1 Pelobacter carbinolicus 1186 19 no rank 0 1100 2620299 1 0 species 1 Pelobacter sp. SFB93 1100 1842532 Pelobacter acetylenicus 1 29542 1020 0 species 1 Pelobacter propionicus 29543 1584 0 species 3 Desulfuromonas 1614 890 genus 18 0 1 no rank 0 1 2614637 892 1823759 892 1 Desulfuromonas sp. DDH964 0 species 1 Desulfuromonas soudanensis 1603606 704 species 0 14 Geobacteraceae 213422 13450 1 50 0 family 28231 12195 11 Geobacter genus 1 90 0 species 0 1 Geobacter uraniireducens 1226 351604 345632 1167 Geobacter pickeringii 1 0 species Geobacter daltonii 1 1203471 782 0 species 0 species Geobacter lovleyi 1 313985 1577 0 no rank 2 2729 2627627 0 species 1613 443143 1 Geobacter sp. M18 species 0 Geobacter sp. M21 1 443144 1116 28232 831 1 Geobacter metallireducens 0 species 1340425 1122 1 Geobacter anodireducens species 0 1 Geobacter bemidjiensis 225194 1590 species 0 0 species 35554 1081 Geobacter sulfurreducens 1 Geoalkalibacter 2 392332 1205 1 2 0 genus species 0 1 Geoalkalibacter subterraneus 1203 483547 213462 2649 9 Syntrophobacterales 30 0 1 order Syntrophobacteraceae 3 655 213465 family 1 6 0 2 Syntrophobacter 29526 649 1 3 0 genus species 0 119484 646 Syntrophobacter fumaroxidans 1 family 0 3 1 213468 1964 5 Syntrophaceae 1 2357 696 genus 0 Desulfomonile tiedjei 1 2358 696 0 species Syntrophus 2 826 43773 1 7 0 genus 1 Syntrophus aciditrophicus 819 316277 0 species 1 439 60892 genus 0 species 0 Desulfobacca acetoxidans 1 60893 439 213113 1117 Desulfurellales 5 order 1 6 0 1111 117942 4 0 family 1 0 1 genus 2 Desulfurella 33001 579 1 Desulfurella acetivorans 578 33002 species 0 Hippea 2 84404 532 1 0 1 genus 84405 531 Hippea maritima 1 0 species 38 Myxococcales 29 22085 1 209 0 order 0 suborder 1100 224462 3 3 Kofleriaceae 224464 1100 1 0 11 family 162027 1089 Haliangium 2 0 49 1 genus 0 species Haliangium ochraceum 1 80816 1040 3683 80812 8 0 suborder family 23 0 1 Polyangiaceae 5 2874 49 1 1 0 genus 50 726 2 Chondromyces 725 52 Chondromyces crocatus 1 species 0 39643 2125 2 Sorangium genus 1 0 28 species 0 2097 56 Sorangium cellulosum 1 1 7 0 family 1055686 809 3 Sandaracinaceae 2 Sandaracinus 802 1055688 genus 1 0 7 species 0 Sandaracinus amylolyticus 1 795 927083 26 80811 17093 suborder 0 25 0 1 family 1524215 3400 5 Anaeromyxobacteraceae 1 0 94 genus 161492 3375 Anaeromyxobacter 4 0 species 1498 161493 1 Anaeromyxobacter dehalogenans 0 no rank 2620896 1783 2 0 species 404589 897 1 Anaeromyxobacter sp. Fw109-5 1 Anaeromyxobacter sp. K 447217 886 species 0 family 1 0 67 8005 31 Myxococcaceae 9 genus 39 0 1 3 Corallococcus 2901 83461 0 species Myxococcus macrosporus 1 1147 35 species 0 184914 1715 1 Corallococcus coralloides 0 203 1 genus Myxococcus 5 32 5037 0 species 1 Myxococcus xanthus 883 34 33 2223 Myxococcus fulvus 1 species 0 Myxococcus stipitatus 1 808 83455 0 species species 0 Myxococcus hansupus 1 920 1297742 5006 39 Archangiaceae 9 0 96 1 family Melittangium 2 44 1160 genus 4 0 1 0 species 1 Melittangium boletus 83453 1156 1 0 7 genus 2 Stigmatella 40 1072 species 0 41 1065 Stigmatella aurantiaca 1 47 1445 2 Archangium genus 0 15 1 48 1430 1 Archangium gephyra species 0 Cystobacter 2 42 1233 genus 0 29 1 1 Cystobacter fuscus 43 1204 species 0 Vulgatibacteraceae 3 1524213 682 family 1 0 14 genus 0 19 1 2 Vulgatibacter 668 1524214 0 species 1 Vulgatibacter incomptus 649 1391653 order 1 16 0 1172 453227 Desulfarculales 4 3 Desulfarculaceae 1156 453228 family 1 0 12 genus 1 4 0 2 Desulfarculus 1144 453229 453230 1140 Desulfarculus baarsii 1 0 species 1236 620688 Gammaproteobacteria 884 class 0 1407 1 19 Legionellales 7640 118969 order 1 0 27 0 24 1 family 118968 767 Coxiellaceae 4 0 genus 2 776 592 1 Coxiella burnetii 531 777 0 species 61 2676648 1 no rank 0 species 0 325775 61 1 Coxiella endosymbiont of Amblyomma americanum 134284 151 1 no rank 0 0 species Coxiella-like endosymbiont 1 151 1592897 1 53 0 family 444 6846 14 Legionellaceae 12 Legionella 6453 445 genus 1 0 9 557 29423 1 Legionella oakridgensis 0 species 0 species 1 Legionella waltersii 66969 516 species 0 Legionella lansingensis 1 45067 276 2005262 122 Legionella endosymbiont of Polyplax serrata 1 0 species 452 396 Legionella spiritensis 1 0 species 28087 470 1 Legionella sainthelensi 0 species 450 440 Legionella longbeachae 1 species 0 1 Legionella clemsonensis 1867846 395 0 species Legionella hackeliae 1 449 366 0 species Legionella fallonii 1 96230 468 0 species 1 Legionella pneumophila 446 2438 species 0 1 465 340 genus 0 Tatlockia micdadei 1 451 340 0 species Chromatiales 51 15964 135613 order 1 0 162 Chromatiaceae 17 1046 5919 family 1 0 73 4 Nitrosococcus 1227 957 1 4 0 genus 0 species 133539 356 Nitrosococcus halophilus 1 473531 346 Nitrosococcus watsonii 1 0 species 0 species 251 1229 Nitrosococcus oceani 1 1 6 0 genus 2 Thiocystis 13724 910 Thiocystis violascens 1 73141 904 0 species 1 82569 503 0 no rank 503 1978339 1 Chromatiaceae bacterium 2141T.STBD.0c.01a species 0 1 85072 926 0 genus 1049 926 Allochromatium vinosum 1 species 0 31 0 1 genus 85076 854 2 Marichromatium 1 Marichromatium purpuratum 823 37487 species 0 53392 977 2 Thiodictyon 7 0 1 genus 970 1166950 1 Candidatus Thiodictyon syntrophicum 0 species 156885 547 2 Thioflavicoccus 1 0 3 genus 0 species 1 Thioflavicoccus mobilis 80679 544 172 1980513 Candidatus Nitrosoglobus 2 genus 1 0 3 169 1630141 1 Candidatus Nitrosoglobus terrae species 0 family 0 60 1 72276 6227 18 Ectothiorhodospiraceae 6 Thioalkalivibrio 2962 106633 57 0 1 genus species 0 1033854 931 Thioalkalivibrio sulfidiphilus 1 108010 487 Thioalkalivibrio paradoxus 1 species 0 1 Thioalkalivibrio nitratireducens 525 186931 species 0 no rank 0 1 456 2621013 1 Thioalkalivibrio sp. K90mix 456 396595 0 species 1 Thioalkalivibrio versutus 106634 506 species 0 genus 1 6 0 Alkalilimnicola 2 133193 722 351052 716 1 Alkalilimnicola ehrlichii species 0 0 5 1 genus 519 85108 2 Halorhodospira 0 species Halorhodospira halophila 1 514 1053 genus 19 0 1 Ectothiorhodospira 2 1051 807 1 2684909 788 no rank 0 0 species 1442136 788 Ectothiorhodospira sp. BSL-9 1 genus 0 2 1 1765964 393 Acidihalobacter 2 species 0 Acidihalobacter prosperus 1 391 160660 Spiribacter 3 764 1335745 genus 41 0 1 species 0 1335746 338 1 Spiribacter salinus 1 Spiribacter curvatus 1335757 385 species 0 family 1 0 9 624 1676141 Wenzhouxiangellaceae 3 2 Wenzhouxiangella 615 1676142 0 9 1 genus Wenzhouxiangella marina 1 1579979 606 0 species 4 Halothiobacillaceae 255526 799 0 11 1 family genus 0 9 1 3 Halothiobacillus 788 109262 0 no rank 1 428 2636392 0 species Halothiobacillus sp. LS2 1 1860122 428 1 Halothiobacillus neapolitanus 351 927 0 species family 0 1 1 321 1738654 3 Woeseiaceae 320 1738655 2 Woeseia genus 1 0 1 Woeseia oceani 1 1548547 319 0 species 449719 862 Granulosicoccaceae 3 1 1 0 family 437504 861 2 Granulosicoccus genus 0 3 1 1 Granulosicoccus antarcticus 437505 858 0 species 2 451214 1050 no rank 0 2 Thiohalobacter 1050 1273155 0 64 1 genus Thiohalobacter thiocyanaticus 1 585455 986 0 species 42 Vibrionales 135623 30852 order 0 23 1 family 1 0 212 41 Vibrionaceae 641 30829 30 Vibrio 24563 662 513 0 1 genus 0 species 190893 1080 1 Vibrio coralliilyticus species 0 678 29494 1 Vibrio furnissii 793 55601 Vibrio anguillarum 1 0 species species 0 1494 674 1 Vibrio mimicus species 0 687 672 Vibrio gazogenes 1 species 0 653 553239 Vibrio breoganii 1 Vibrio scophthalmi 1 640 45658 species 0 species 0 1534743 656 Vibrio hyugaensis 1 10 717610 8918 species group 0 0 species 348 190895 1 Vibrio rotiferianus species 0 848 669 Vibrio harveyi 1 Vibrio campbellii 1 1387 680 species 0 1409 670 Vibrio parahaemolyticus 1 0 species species subgroup 0 2 1233 2315253 species 0 150340 394 Vibrio antiquarius 1 0 species 50719 839 Vibrio diabolicus 1 species 0 Vibrio natriegens 1 691 1162 0 species Vibrio alginolyticus 1 1378 663 766224 507 Vibrio jasicida 1 species 0 0 species 646 696485 1 Vibrio owensii species 0 28173 718 Vibrio nigripulchritudo 1 0 species Vibrio fluvialis 1 676 995 Vibrio tritonius 1 1435069 683 species 0 species 0 1 Vibrio tasmaniensis 212663 280 672 1804 Vibrio vulnificus 1 species 0 1 Vibrio cholerae 1068 666 0 species no rank 0 1363 2614977 2 724 1116375 1 Vibrio sp. EJY3 species 0 Vibrio sp. 2521-89 1 639 2014742 0 species species 0 2025808 399 Vibrio qinghaiensis 1 species 0 1 Vibrio tapetis 52443 714 1891919 442 1 species group 0 1 Vibrio tubiashii 442 29498 species 0 4 Aliivibrio 511678 2066 24 0 1 genus 1034 668 1 Aliivibrio fischeri species 0 species 0 478 80852 Aliivibrio wodanis 1 species 0 1 Aliivibrio salmonicida 40269 530 1 2042066 577 genus 0 0 species 1755811 577 1 Paraphotobacterium marinum Photobacterium 4 657 2773 12 0 1 genus 1086 38293 Photobacterium damselae 1 0 species 0 species 915 1295392 Photobacterium gaetbulicola 1 1 Photobacterium profundum 74109 760 species 0 genus 0 246861 638 1 0 species Grimontia hollisae 1 673 638 2 33811 1503 no rank 0 species 0 83406 897 gamma proteobacterium HdN1 1 species 0 endosymbiont of unidentified scaly snail isolate Monju 1 1248727 606 0 no rank 11 3382 118884 Candidatus Thioglobus 3 655184 540 0 2 1 genus 1705394 257 1 Candidatus Thioglobus autotrophicus 0 species species 0 1427364 281 Candidatus Thioglobus singularis 1 720 32036 3 clade 0 species 0 113267 195 Bathymodiolus septemdierum thioautotrophic gill symbiont 1 0 genus 1 210 1541743 0 species 210 386487 Candidatus Ruthia magnifica 1 species 0 Calyptogena okutanii thioautotrophic gill symbiont 1 410330 315 0 genus 1524249 561 1 561 1249552 Pseudohongiella spirulinae 1 0 species genus 0 524 349742 1 1 Sedimenticola thiotaurini 1543721 524 species 0 198346 428 1 0 clade 1 Candidatus Baumannia cicadellinicola 186490 428 species 0 1 0 1 genus 609 1608298 2 Thiolapillus species 0 Thiolapillus brandeum 1 1076588 608 274980 91347 Enterobacterales 245 order 1 817 0 1160 451511 2 0 no rank 1 33 0 genus 702 1160 2 Plesiomonas 0 species 1 Plesiomonas shigelloides 703 1127 1903414 11160 Morganellaceae 21 1 75 0 family genus 80 0 1 583 2020 3 Proteus 585 650 Proteus vulgaris 1 species 0 1 Proteus mirabilis 584 1290 species 0 1584 586 Providencia 4 1 21 0 genus 587 617 Providencia rettgeri 1 0 species 126385 380 1 Providencia alcalifaciens 0 species 0 species 588 566 1 Providencia stuartii 378 637 1 0 genus 0 species 1 Arsenophonus symbiont of Lipoptena fortisetosa 634113 378 29487 2125 4 Photorhabdus 101 0 1 genus 1 Photorhabdus asymbiotica 291112 689 0 species species 0 29488 826 1 Photorhabdus luminescens 574560 509 1 Photorhabdus temperata species 0 44 0 1 genus 1700 581 Morganella 2 species 0 Morganella morganii 1 1656 582 1 62 0 genus 3278 626 Xenorhabdus 6 40577 458 Xenorhabdus poinarii 1 0 species 1 Xenorhabdus nematophila 628 636 species 0 351679 477 Xenorhabdus hominickii 1 0 species Xenorhabdus bovienii 1 40576 1065 0 species 351671 580 1 Xenorhabdus doucetiae species 0 0 family 2 1903416 792 82984 792 Pragia 2 12 0 1 genus 780 82985 Pragia fontium 1 0 species Yersiniaceae 38 35160 1903411 family 1 168 0 genus 1 0 965 613 20170 Serratia 16 Serratia plymuthica 1 1565 82996 0 species species 0 61652 1023 1 Serratia rubidaea 4673 615 1 Serratia marcescens species 0 species 0 Serratia liquefaciens 1 1117 614 0 no rank 8 2647522 7114 2033438 938 1 Serratia sp. MYb239 0 species species 0 Serratia sp. ATCC 39006 1 104623 951 768490 766 Serratia sp. AS12 1 species 0 1758196 870 1 Serratia sp. SSNIH1 species 0 species 0 1327989 1141 Serratia sp. FS14 1 1 Serratia sp. SCBI 919 488142 0 species 1 Serratia sp. FGI94 763 671990 species 0 species 0 1 Serratia sp. AS13 766 768493 species 0 Serratia fonticola 1 1710 47917 Serratia proteamaculans 1 913 28151 species 0 61651 1090 Serratia ficaria 1 0 species 1 980 929812 0 genus 929813 980 Gibbsiella quercinecans 1 0 species 10067 629 13 Yersinia genus 438 0 1 species 0 Yersinia aldovae 1 614 29483 Yersinia aleksiciae 1 445 263819 0 species 2653513 462 1 0 no rank species 0 1839800 462 1 Yersinia sp. FDAARGOS_228 species 0 Yersinia rohdei 1 701 29485 species 0 Yersinia kristensenii 1 28152 735 631 481 Yersinia intermedia 1 species 0 0 species group 3 1649845 1641 species 0 1 Yersinia pestis 632 424 0 species Yersinia similis 1 608 367190 1 Yersinia pseudotuberculosis 609 633 0 species 0 species 616 29486 Yersinia ruckeri 1 species 0 630 2012 Yersinia enterocolitica 1 Yersinia frederiksenii 1 1922 29484 0 species genus 0 5 1 729 1745211 2 Chania Chania multitudinisentens 1 724 1639108 species 0 1 60 0 genus 4 Rahnella 3037 34037 no rank 0 2635087 2003 2 0 species Rouxiella sp. ERMR1:05 1 1006 1805933 0 species 997 741091 1 Rahnella sp. Y9602 Rahnella aquatilis 1 34038 974 0 species 0 genus 9 1565532 1 Rouxiella 1 0 55 family 28 Erwiniaceae 1903409 19323 1 0 97 genus Erwinia 8 4450 551 species 0 338565 673 1 Erwinia tasmaniensis 0 species 1 Erwinia pyrifoliae 79967 410 species 0 Erwinia billingiae 1 1256 182337 2622719 474 1 no rank 0 215689 474 1 Erwinia sp. Ejp617 species 0 species 0 565 552 Erwinia amylovora 1 1 Candidatus Erwinia sp. ErCipseudotaxifoliae 122 1922217 0 species 853 1619313 1 Erwinia gerundensis 0 species genus 0 9 1 875 82986 Tatumella 2 species 0 1 Tatumella citrea 866 53336 genus 2 0 1 51228 413 Wigglesworthia 2 0 species 51229 411 1 Wigglesworthia glossinidia 2564 32199 Buchnera 2 genus 1 0 2 Buchnera aphidicola 1 9 2562 species 0 2 2100764 1909 0 genus species 0 1010 665914 Pantoea gaviniae 1 0 species 899 665913 1 Pantoea calida genus 0 335 1 Pantoea 11 53335 9057 species 0 Pantoea alhagi 1 826 1891675 0 no rank 3 2630326 2489 0 species 1 Pantoea sp. PSNIH2 811 1484157 592316 946 Pantoea sp. At-9b 1 species 0 species 0 1 Pantoea sp. PSNIH1 1484158 732 species group 0 1 1654067 1326 549 1326 Pantoea agglomerans 1 species 0 470934 1730 Pantoea vagans 1 species 0 Pantoea ananatis 1 988 553 0 species 0 species 1 Pantoea stewartii 66269 460 Pantoea rwandensis 1 1076550 586 species 0 species 0 1 Candidatus Pantoea carbekii 317 1235990 family 44 0 1 20 Pectobacteriaceae 17297 1903410 2 Brenneria 71655 1469 genus 1 11 0 1 Brenneria goodwinii 1109412 1458 0 species 1 0 189 genus Dickeya 6 204037 6622 species 0 1 Dickeya solani 1089444 1833 species 0 1100 1778540 1 Dickeya fangzhongdai 1279 204042 Dickeya zeae 1 0 species 972 204039 1 Dickeya dianthicola species 0 species 0 1249 204038 1 Dickeya dadantii 6 Pectobacterium 122277 6889 genus 117 0 1 Pectobacterium carotovorum 1 554 3049 species 0 species 0 Pectobacterium wasabiae 1 616 55208 0 species 29471 1025 1 Pectobacterium atrosepticum 1426 2042057 Pectobacterium polaris 1 species 0 Pectobacterium parmentieri 1 656 1905730 0 species 84565 2273 5 Sodalis genus 131 0 1 1929246 77 1 Sodalis endosymbiont of Henestaris halophilus species 0 1 Sodalis glossinidius 63612 638 0 species 0 species Sodalis praecaptivus 1 1239307 937 490 1486991 Candidatus Sodalis pierantonius 1 species 0 14 Hafniaceae 1903412 8943 family 1 54 0 1 29 0 genus 2 Obesumbacterium 82982 553 1 Obesumbacterium proteus 82983 524 species 0 635 6223 Edwardsiella 8 genus 0 326 1 67780 650 Edwardsiella ictaluri 1 0 species Edwardsiella hoshinae 1 93378 621 species 0 0 species 1821960 867 1 Edwardsiella anguillarum 0 species 636 1311 Edwardsiella tarda 1 0 species 1263550 750 1 Edwardsiella piscicida 2 1698 2676541 no rank 0 species 0 852 1578828 1 Edwardsiella sp. EA181011 Edwardsiella sp. LADL05-105 1 846 1650654 species 0 1 30 0 genus Hafnia 3 568 2113 1 Hafnia alvei 569 1615 0 species 1 2621980 468 no rank 0 468 1848580 Hafnia sp. CBA7124 1 0 species 543 180328 119 Enterobacteriaceae 0 1594 1 family 191675 2994 18 0 no rank 18 2994 84563 clade 0 1 1906657 121 0 genus Candidatus Doolittlea endobia 1 1778262 121 species 0 1058 84564 7 clade 0 genus 1 0 40 7 Candidatus Blochmannia 1058 203804 0 species 108 251542 Candidatus Blochmannia chromaiodes 1 1 Candidatus Blochmannia pennsylvanicus 152 101534 species 0 711328 241 2 no rank 0 38 1505596 1 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 0 0 species 203 1505597 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 357 203907 Candidatus Blochmannia floridanus 1 0 species 0 species 251535 160 1 Candidatus Blochmannia vafer clade 0 4 146507 718 218 134287 secondary endosymbiont of Heteropsylla cubana 1 0 species species 0 227 1199245 secondary endosymbiont of Ctenarytaina eucalypti 1 568987 273 2 Candidatus Hamiltonella genus 1 0 1 1 Candidatus Hamiltonella defensa 138072 272 0 species 0 genus 1906660 326 1 1 Candidatus Mikella endobia 1778264 326 0 species 245 1682492 1 genus 0 1410383 245 1 Candidatus Tachikawaea gelatinosa species 0 165 199891 1 0 clade 1 secondary endosymbiont of Trabutina mannipara 1835721 165 species 0 Candidatus Gullanella 2 199 1906661 0 3 1 genus 0 species 1 Candidatus Gullanella endobia 1070130 196 0 genus 1 1906659 162 0 species 1778263 162 1 Candidatus Hoaglandella endobia genus 0 59 1 3 Raoultella 3250 160674 938 575 1 Raoultella planticola species 0 Raoultella ornithinolytica 1 54291 2253 species 0 10 Klebsiella 570 27553 1 0 980 genus 573 10683 1 Klebsiella pneumoniae 0 species 0 species Klebsiella quasivariicola 1 2026240 918 3922 571 1 Klebsiella oxytoca 0 species 0 no rank 2608929 2024 2 1006 1905288 1 Klebsiella sp. LTGPAF-6F 0 species 1934254 1018 1 Klebsiella sp. M5al species 0 Klebsiella quasipneumoniae 1 1463165 1387 species 0 1 Klebsiella variicola 3200 244366 species 0 species 0 1 Klebsiella michiganensis 1134687 2353 0 species 2086 548 Klebsiella aerogenes 1 0 genus 814 579 1 species 0 1 Kluyvera intermedia 61648 814 Candidatus Riesia 2 401618 192 1 3 0 genus 0 species 1 Candidatus Riesia pediculicola 401619 189 1 7 0 genus 1335483 1079 2 Shimwellia species 0 563 1072 1 Shimwellia blattae 5 Kosakonia 3617 1330547 genus 19 0 1 0 species 1158459 790 Kosakonia sacchari 1 species 0 Kosakonia cowanii 1 208223 1021 1 Kosakonia radicincitans 283686 936 0 species Kosakonia oryzae 1 497725 851 species 0 4 Leclercia 83654 3090 1 0 129 genus no rank 0 2 2036 2627398 species 0 1 Leclercia sp. LSNIH1 948 1920114 species 0 Leclercia sp. LSNIH3 1 1920116 1088 83655 925 Leclercia adecarboxylata 1 0 species 1 1048757 159 0 genus 159 1048758 1 Candidatus Moranella endobia species 0 0 611 1 genus 5 Escherichia 52748 561 species 0 Escherichia marmotae 1 1586 1499973 species 0 564 2619 Escherichia fergusonii 1 208962 4034 Escherichia albertii 1 0 species 562 43898 1 Escherichia coli species 0 413496 5964 8 Cronobacter genus 1 0 155 0 species Cronobacter universalis 1 554 535744 0 species 1432 28141 1 Cronobacter sakazakii 1163710 678 Cronobacter condimenti 1 0 species Cronobacter malonaticus 1 413503 943 species 0 1 Cronobacter turicensis 413502 702 0 species species 0 413501 677 1 Cronobacter muytjensii 413497 823 Cronobacter dublinensis 1 0 species genus 1 635 0 Citrobacter 14 544 16368 no rank 0 2644389 1482 2 1 Citrobacter sp. CFNIH10 1920110 923 0 species Citrobacter sp. FDAARGOS_156 1 1702170 559 0 species 0 species group 7 1344959 9239 2066049 885 1 Citrobacter freundii complex sp. CFNIH2 species 0 2077148 761 1 Citrobacter freundii complex sp. CFNIH4 species 0 1 Citrobacter freundii complex sp. CFNIH9 2077149 947 species 0 0 species 546 4032 Citrobacter freundii 1 0 species Citrobacter werkmanii 1 1093 67827 2077147 551 1 Citrobacter freundii complex sp. CFNIH3 species 0 0 species 1 Citrobacter braakii 57706 970 0 species 35703 2055 Citrobacter amalonaticus 1 1057 545 1 Citrobacter koseri species 0 0 species Citrobacter rodentium 1 1053 67825 1 Citrobacter farmeri 847 67824 species 0 3 Salmonella 590 9634 genus 1 37 0 0 species 8736 28901 1 Salmonella enterica species 0 Salmonella bongori 1 861 54736 Lelliottia 4 2811 1330545 1 0 23 genus 0 species Lelliottia amnigena 1 61646 1272 1907578 611 Lelliottia jeotgali 1 species 0 species 0 1 Lelliottia nimipressuralis 69220 905 13 0 1 genus 1330546 2328 Pluralibacter 3 species 0 1334193 850 [Enterobacter] lignolyticus 1 0 species 61647 1465 Pluralibacter gergoviae 1 547 24659 22 Enterobacter 0 1346 1 genus no rank 0 9 5718 2608935 species 0 Enterobacter sp. CRENT-193 1 2051905 782 Enterobacter sp. 638 1 456 399742 0 species 1 Enterobacter sp. SA187 812 1914861 species 0 0 species 414 1977566 Enterobacter sp. Crenshaw 1 1868135 295 1 Enterobacter sp. HK169 species 0 1 Enterobacter sp. ODB01 678 1827481 0 species species 0 1 Enterobacter sp. R4-368 961 1166130 species 0 Enterobacter sp. FY-07 1 1692238 963 0 species 1560339 357 1 Enterobacter sp. E20 354276 17595 12 0 species group 1794 2757714 3 0 no rank 0 species 1915310 471 Enterobacter cloacae complex sp. ECNIH7 1 0 species 1 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 2077137 789 species 0 1 Enterobacter cloacae complex bacterium 534 2027919 species 0 Enterobacter cloacae 1 550 6828 0 species 1 Enterobacter kobei 764 208224 1 Enterobacter ludwigii 782 299767 species 0 species 0 2371 1 158836 3896 Enterobacter hormaechei 3 subspecies 0 1 Enterobacter cloacae complex 'Hoffmann cluster III' 1812934 832 Enterobacter xiangfangensis 1 693 1296536 0 subspecies 1 Enterobacter asburiae 2193 61645 species 0 0 species 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 1812935 541 0 species 69218 797 1 Enterobacter cancerogenus 409304 195 Candidatus Ishikawaella 2 genus 0 3 1 1 Candidatus Ishikawaella capsulata 168169 192 species 0 no rank 0 5 4425 36866 712 693444 1 Enterobacteriaceae bacterium strain FGI 57 0 species 838 891974 Plautia stali symbiont 1 species 0 1920109 901 Enterobacteriaceae bacterium ENNIH2 1 0 species 0 species Enterobacteriaceae bacterium ENNIH3 1 1181 1920128 Enterobacteriaceae bacterium ENNIH1 1 793 2066051 0 species 21 0 1 genus 158483 2664 Cedecea 2 species 0 2643 158822 Cedecea neteri 1 Shigella 4 620 14190 0 872 1 genus Shigella dysenteriae 1 622 4287 species 0 623 3029 Shigella flexneri 1 0 species no rank 0 1 6002 2629414 Shigella sp. PAMC 28760 1 6002 1813821 0 species 135619 26451 Oceanospirillales 68 196 0 1 order Oceanospirillaceae 11 135620 4367 1 0 41 family genus 0 1 188907 418 Oleispira antarctica 1 188908 418 species 0 2 Thalassolituus 187492 518 3 0 1 genus 187493 515 1 Thalassolituus oleivorans species 0 0 genus 1 476 1537406 Bacterioplanes sanyensis 1 1249553 476 species 0 28253 1555 Marinomonas 4 genus 11 0 1 0 species Marinomonas posidonica 1 936476 543 no rank 0 383 196814 1 species 0 383 400668 Marinomonas sp. MWYL1 1 1 Marinomonas mediterranea 119864 618 0 species genus 0 14 1 2 Marinobacterium 48075 1359 0 species 1821621 1345 1 Marinobacterium aestuarii 0 5 1 family 1250 255527 5 Saccharospirillaceae 1445504 867 2 Gynuella 1 12 0 genus 855 1445505 1 Gynuella sunshinyii 0 species genus 1 1 0 2 Reinekea 230494 378 Reinekea forsetii 1 1336806 377 species 0 1 9 0 family 1634 1920240 6 Kangiellaceae Kangiella 5 261963 1625 genus 0 51 1 species 0 Kangiella sediminilitoris 1 285 1144748 1 Kangiella geojedonensis 914150 244 0 species 0 species Kangiella koreensis 1 261964 585 1561924 460 1 Kangiella profundi 0 species 191033 909 3 Oleiphilaceae family 0 15 1 894 141450 Oleiphilus 2 1 30 0 genus 141451 864 1 Oleiphilus messinensis species 0 3 Hahellaceae 224379 672 6 0 1 family genus 1 0 28 Hahella 2 666 158481 1 Hahella chejuensis 638 158327 species 0 224372 4078 Alcanivoracaceae 9 family 1 0 20 0 74 1 genus 3264 59753 6 Alcanivorax 1306787 811 1 Alcanivorax pacificus 0 species no rank 0 1 401 2638842 species 0 Alcanivorax sp. NBRC 101098 1 1113728 401 0 species 1 Alcanivorax borkumensis 59754 386 0 species 683 1094342 Alcanivorax xenomutans 1 909 285091 1 Alcanivorax dieselolei 0 species 2 Ketobacter 794 2025617 genus 0 31 1 Ketobacter alkanivorans 1 763 1917421 0 species Halomonadaceae 30 13345 28256 0 171 1 family genus 0 12 1 Kushneria 3 504090 1902 species 0 157779 972 Kushneria marisflavi 1 1 Kushneria konosiri 698828 918 0 species 404432 801 2 Salinicola genus 0 8 1 1771309 793 Salinicola tamaricis 1 0 species 1 23 0 genus 2 Halotalea 519 376488 species 0 Halotalea alkalilenta 1 376489 496 8404 2745 Halomonas 15 genus 1 0 149 species 0 Halomonas hydrothermalis 1 115561 626 1 Halomonas beimenensis 937 475662 0 species species 0 Halomonas aestuarii 1 725 1897729 1 Halomonas huangheensis 622 1178482 0 species 8 4363 2609666 0 no rank Halomonas sp. 'Soap Lake #7' 1 1962264 471 0 species 0 species 1949203 471 Halomonas sp. 'Soap Lake #6' 1 species 0 1 Halomonas sp. GT 1971364 489 Halomonas sp. GFAJ-1 1 480 1118153 species 0 species 0 628 1504981 Halomonas sp. KO116 1 species 0 1 Halomonas sp. SF2003 2136172 677 1883416 618 Halomonas sp. 1513 1 species 0 species 0 1610576 529 Halomonas sp. R57-5 1 0 species 592 507626 Halomonas chromatireducens 1 390 213554 1 Halomonas campaniensis species 0 0 10 1 genus 42054 439 Chromohalobacter 2 Chromohalobacter salexigens 1 158080 429 species 0 0 no rank 114403 199 3 0 genus 45 235572 1 0 species 91844 45 1 Candidatus Portiera aleyrodidarum 0 genus 1 114185 30 species 0 114186 30 Candidatus Carsonella ruddii 1 1495768 124 1 genus 0 species 0 1495769 124 Candidatus Evansia muelleri 1 genus 12 0 1 Cobetia 2 910 204286 species 0 Cobetia marina 1 898 28258 1 147 0 order 29 Aeromonadales 135624 23825 23678 84642 28 Aeromonadaceae family 0 297 1 1 11 0 genus 2 Zobellella 347533 1131 0 species 1 Zobellella denitrificans 347534 1120 Tolumonas 2 43947 1022 genus 1 0 9 43948 1013 1 Tolumonas auensis 0 species Oceanimonas 2 129577 1124 genus 1 0 14 1110 2636315 1 no rank 0 species 0 1 Oceanimonas sp. GK1 1110 511062 19307 642 Aeromonas 18 0 1339 1 genus 0 species Aeromonas rivipollensis 1 948519 990 0 species 1 Aeromonas aquatica 843 558964 196024 778 1 Aeromonas dhakensis 0 species 654 1998 Aeromonas veronii 1 species 0 4955 257493 8 no rank 0 species 0 Aeromonas sp. CU5 1 2033033 654 Aeromonas sp. ASNIH1 1 1636606 456 0 species 0 species Aeromonas sp. ASNIH5 1 1758179 682 0 species Aeromonas sp. ASNIH4 1 763 1636609 species 0 1920107 305 1 Aeromonas sp. ASNIH7 0 species Aeromonas sp. ASNIH3 1 1636608 545 species 0 1 Aeromonas sp. CA23 2033032 991 species 0 559 1636607 1 Aeromonas sp. ASNIH2 0 species 644 4401 1 Aeromonas hydrophila 0 species Aeromonas salmonicida 1 645 1643 868 651 Aeromonas media 1 0 species Aeromonas schubertii 1 652 970 0 species Aeromonas caviae 1 648 522 species 0 1 0 1 genus 225143 797 Oceanisphaera 3 1903694 318 1 Oceanisphaera sp. AMac2203 species 0 species 0 478 1416627 Oceanisphaera profunda 1 0 46 1 order Methylococcales 13 135618 3712 family 65 0 1 Methylococcaceae 12 3666 403 0 3 1 genus Methylovulum 2 762296 471 1704499 468 1 Methylovulum psychrotolerans species 0 2 Methylomicrobium 39773 615 1 0 2 genus 1 Methylomicrobium alcaliphilum 271065 613 species 0 Methylococcus 2 572 413 genus 1 0 20 Methylococcus capsulatus 1 414 552 0 species 1943 416 5 Methylomonas genus 1 38 0 584 1538553 Methylomonas denitrificans 1 species 0 1 419 2608980 0 no rank 1727196 419 Methylomonas sp. DH-1 1 0 species 1 Methylomonas koyamae 702114 388 species 0 0 species Methylomonas methanica 1 514 421 129 Pseudomonadales 109017 72274 0 467 1 order 1 0 533 family 87383 135621 Pseudomonadaceae 86 subfamily 0 3 351 1966 genus 0 22 1 352 1966 Azotobacter 3 0 species 1 Azotobacter vinelandii 896 354 353 1048 1 Azotobacter chroococcum 0 species genus 1 0 2 1849530 544 2 Oblitimonas species 0 1697053 542 Oblitimonas alkaliphila 1 84340 286 Pseudomonas 80 genus 0 2984 1 0 species group 136843 11730 9 species 0 Pseudomonas poae 1 200451 439 Pseudomonas corrugata 1 47879 455 0 species 582 76761 1 Pseudomonas veronii 0 species 47878 1093 1 Pseudomonas azotoformans 0 species 0 species 983 380021 1 Pseudomonas protegens 1 Pseudomonas trivialis 200450 461 species 0 1 Pseudomonas orientalis 425 76758 species 0 0 species Pseudomonas fluorescens 1 6709 294 1 Pseudomonas mandelii 75612 583 species 0 no rank 0 17718 196821 30 Pseudomonas sp. ATCC 13867 1 1294143 685 species 0 0 species 537 1827300 1 Pseudomonas sp. MYb193 0 species 2083054 605 1 Pseudomonas sp. LG1D9 species 0 Pseudomonas sp. TCU-HL1 1 1856685 750 0 species 1636610 619 Pseudomonas sp. PONIH3 1 329 2083051 1 Pseudomonas sp. SWI6 species 0 Pseudomonas sp. UW4 1 595 1207075 species 0 Pseudomonas sp. TKP 1 1415630 573 0 species 607 1259844 1 Pseudomonas sp. FGI182 species 0 508 1930532 Pseudomonas sp. CC6-YY-74 1 species 0 0 species 1931241 701 1 Pseudomonas sp. S-6-2 species 0 646 2069256 1 Pseudomonas sp. XWY-1 0 species Pseudomonas sp. FDAARGOS_380 1 424 2018067 Pseudomonas sp. GR 6-02 1 1659194 516 species 0 0 species Pseudomonas sp. VLB120 1 69328 451 1 Pseudomonas sp. SWI44 362 2083053 0 species 0 species 1 Pseudomonas sp. DR 5-09 1534110 556 0 species Pseudomonas sp. LPH1 1 1898684 570 0 species 816 1500686 Pseudomonas sp. Os17 1 species 0 2083055 579 1 Pseudomonas sp. LH1G9 species 0 1500687 734 1 Pseudomonas sp. St29 species 0 1 Pseudomonas sp. CCOS 191 1649877 570 species 0 1 Pseudomonas sp. NC02 560 2067572 2049589 487 Pseudomonas sp. HLS-6 1 0 species 2083052 655 1 Pseudomonas sp. SWI36 species 0 0 species 1028989 835 Pseudomonas sp. StFLB209 1 species 0 1338689 643 Pseudomonas sp. JY-Q 1 Pseudomonas sp. URMO17WK12:I11 1 1283291 830 0 species 1981174 249 1 Pseudomonas sp. M30-35 0 species Pseudomonas sp. MRSN12121 1 1611770 726 species 0 0 species 1 Pseudomonas silesiensis 1853130 489 617 219572 1 Pseudomonas antarctica 0 species 0 species group 136849 9148 8 species 0 699 36746 Pseudomonas cichorii 1 2 1859 251698 species subgroup 0 species 0 Pseudomonas amygdali 1 1053 47877 Pseudomonas savastanoi 1 29438 806 species 0 2775504 452 1 no rank 0 species 0 1 Pseudomonas sp. Lz4W 1206777 452 species 0 623 46257 1 Pseudomonas avellanae species subgroup 0 1 3661 251695 Pseudomonas syringae 1 317 3661 0 species 0 species 1226 251701 Pseudomonas syringae group genomosp. 3 1 0 species Pseudomonas viridiflava 1 33069 628 65741 525 Pseudomonas knackmussii 1 species 0 species 0 Pseudomonas versuta 1 1788301 303 Pseudomonas koreensis 1 1050 198620 species 0 2 136846 5251 0 species group 74829 756 Pseudomonas balearica 1 species 0 species subgroup 0 1 4495 578833 species 0 4495 316 1 Pseudomonas stutzeri species 0 157783 454 1 Pseudomonas cremoricolorata species 0 312306 420 Pseudomonas entomophila 1 species 0 1 Pseudomonas cerasi 661 1583341 0 species 244566 429 Pseudomonas lurida 1 216142 514 1 Pseudomonas rhizosphaerae 0 species 6 9943 136841 0 species group species 0 3649 287 Pseudomonas aeruginosa 1 43263 845 Pseudomonas alcaligenes 1 species 0 species 0 2434 300 1 Pseudomonas mendocina 0 species subgroup 1232139 927 1 Pseudomonas furukawaii 1 1149133 927 0 species species 0 53412 700 1 Pseudomonas resinovorans 53408 1388 Pseudomonas citronellolis 1 0 species 930166 1382 Pseudomonas brassicacearum 1 0 species species group 0 12661 136845 6 0 species 1256 47880 1 Pseudomonas fulva species 0 894 47885 1 Pseudomonas oryzihabitans species 0 Pseudomonas monteilii 1 1545 76759 78327 1329 Pseudomonas mosselii 1 0 species species 0 303 7032 Pseudomonas putida 1 species 0 70775 605 1 Pseudomonas plecoglossicida 0 species 157782 961 Pseudomonas parafulva 1 0 species 1 Pseudomonas psychrotolerans 692 237610 0 species 559 237609 Pseudomonas alkylphenolica 1 0 species 104087 1190 1 Pseudomonas frederiksbergensis 136842 3877 2 species group 0 0 species Pseudomonas chlororaphis 1 3050 587753 0 species 296 827 Pseudomonas fragi 1 0 species Pseudomonas alcaliphila 1 101564 782 Moraxellaceae 42 468 21167 family 61 0 1 Acinetobacter 25 469 15828 genus 152 0 1 species 0 40215 728 1 Acinetobacter junii 0 species 585 29430 Acinetobacter haemolyticus 1 0 species 1 Acinetobacter oleivorans 379 1148157 species 0 Acinetobacter soli 1 376 487316 0 species group 5 5176 909768 Acinetobacter baumannii 1 470 2123 0 species species 0 1 Acinetobacter pittii 48296 1411 0 species 106654 532 1 Acinetobacter nosocomialis 0 species Acinetobacter lactucae 1 1785128 271 Acinetobacter calcoaceticus 1 471 839 0 species species 0 Acinetobacter indicus 1 756892 529 478 108981 1 Acinetobacter schindleri species 0 3313 196816 7 no rank 0 0 species 1 Acinetobacter sp. NCu2D-2 1608473 550 species 0 1 Acinetobacter sp. ACNIH1 471 1636603 species 0 Acinetobacter sp. ACNIH2 1 1758189 534 0 species Acinetobacter sp. LoGeW2-3 1 1808001 422 1 Acinetobacter sp. TGL-Y2 1407071 548 0 species Acinetobacter sp. TTH0-4 1 491 1646498 species 0 Acinetobacter sp. SWBY1 1 2079596 297 species 0 776 1324350 Acinetobacter equi 1 species 0 614 1789224 Acinetobacter larvae 1 0 species 0 species 40214 548 Acinetobacter johnsonii 1 Acinetobacter bereziniae 1 680 106648 0 species 1 202950 880 0 species strain 0 880 62977 Acinetobacter sp. ADP1 1 0 species Acinetobacter radioresistens 1 614 40216 genus 0 10 1 475 2069 5 Moraxella 386891 490 1 Moraxella bovoculi 0 species 0 species 34062 885 Moraxella osloensis 1 338 480 1 Moraxella catarrhalis species 0 29433 346 Moraxella ovis 1 0 species 11 Psychrobacter 497 3209 genus 18 0 1 0 species 334543 362 Psychrobacter arcticus 1 0 species 1 Psychrobacter urativorans 318 45610 species 0 1 Psychrobacter alimentarius 261164 358 1839 196806 6 no rank 0 272 349106 Psychrobacter sp. PRwf-1 1 0 species 1028416 260 Psychrobacter sp. DAB_AL43B 1 0 species species 0 Psychrobacter sp. P2G3 1 282 1699622 1 Psychrobacter sp. P11G5 450 1699624 0 species species 0 Psychrobacter sp. G 1 255 571800 species 0 Psychrobacter sp. AntiMn-1 1 1720344 320 Psychrobacter cryohalolentis 1 330922 314 species 0 order 0 3 1 31 Thiotrichales 72273 13175 0 family 135617 846 2 1021 520 1 0 genus 0 species Beggiatoa leptomitoformis 1 288004 520 genus 0 1 326 40751 0 species 40754 326 1 Thioploca ingrica Francisellaceae 14 34064 8517 family 1 0 23 1869285 295 1 genus 0 Allofrancisella guangzhouensis 1 594679 295 species 0 0 53 1 genus Francisella 12 262 8199 1542390 478 1 Francisella sp. CA97-1460 0 species 0 species 1 Francisella hispaniensis 622488 395 0 species 1 Francisella persica 954 386 1 Francisella noatunensis 884 657445 0 species 2610885 856 2 0 no rank 1 Francisella sp. FSC1006 512 1547445 0 species 475375 344 Francisella sp. MA067296 1 0 species Francisella tularensis 1 2304 263 0 species 0 species 549298 271 Francisella halioticida 1 Francisella philomiragia 1 1515 28110 species 0 species 0 Francisella sp. TX077310 1 573570 482 species 0 1 Francisella sp. TX077308 573569 575 Piscirickettsiaceae 14 135616 3809 family 38 0 1 3 Methylophaga 967 40222 3 0 1 genus 580 754476 Methylophaga nitratireducenticrescens 1 0 species species 0 384 754477 1 Methylophaga frappieri genus 1 32 0 531 28884 Hydrogenovibrio 2 Hydrogenovibrio crunogenus 1 39765 499 0 species genus 1 2 0 Thiomicrospira 3 720 933 1 Thiomicrospira cyclica 147268 413 species 0 species 0 92245 305 Thiomicrospira aerophila 1 0 6 1 genus 4 Cycloclasticus 34067 880 574 2621467 2 0 no rank 728003 257 Cycloclasticus sp. PY97N 1 0 species 385025 317 1 Cycloclasticus sp. P1 species 0 1 Cycloclasticus zancles 1329899 300 species 0 673 1237 1 genus 0 0 species 1 Piscirickettsia salmonis 673 1238 order 1 0 11 4 Immundisolibacterales 1934945 578 family 0 42 1 1934946 567 Immundisolibacteraceae 3 525 1934947 Immundisolibacter 2 genus 4 0 1 521 1810504 1 Immundisolibacter cernigliae 0 species 1395 1240482 6 Orbales 0 8 1 order 1 28 0 family 1387 1240483 5 Orbaceae 1 4 0 genus Frischella 2 496 1335631 1267021 492 1 Frischella perrara species 0 863 1193503 Gilliamella 2 genus 1 2 0 1 Gilliamella apicola 1196095 861 0 species order 0 18 1 Acidiferrobacterales 6 1115 1692040 1097 1692041 5 Acidiferrobacteraceae 1 0 31 family genus 0 19 1 2 Sulfuricaulis 1744881 711 0 species 1 Sulfuricaulis limicola 1620215 692 Sulfurifustis 2 355 1692042 genus 6 0 1 species 0 1 Sulfurifustis variabilis 1675686 349 19259 135625 Pasteurellales 31 1 4 0 order 30 Pasteurellaceae 712 19255 family 1 0 369 Mannheimia 4 2717 75984 genus 1 0 7 Mannheimia varigena 1 85404 1104 species 0 0 no rank 507 2645054 1 0 species 1432056 507 1 Mannheimia sp. USDA-ARS-USMARC-1261 0 species Mannheimia haemolytica 1 1099 75985 697331 824 Basfia 2 1 3 0 genus 821 157673 1 [Mannheimia] succiniciproducens species 0 Bibersteinia 2 945 476528 genus 1 2 0 943 47735 1 Bibersteinia trehalosi 0 species genus 0 21 1 713 2775 5 Actinobacillus 0 species 1 Actinobacillus succinogenes 67854 547 0 species 1 Actinobacillus suis 716 599 species 0 665 718 Actinobacillus equuli 1 species 0 Actinobacillus pleuropneumoniae 1 715 943 214906 603 1 0 genus 1 Histophilus somni 603 731 0 species genus 6 0 1 3 Pasteurella 745 2469 0 species Pasteurella dagmatis 1 754 701 Pasteurella multocida 1 747 1762 0 species genus 0 1 859 155493 species 0 1 Gallibacterium anatis 750 859 Haemophilus 6 4666 724 genus 1 12 0 species 0 628 730 1 [Haemophilus] ducreyi 1 Haemophilus influenzae 1672 727 species 0 Haemophilus parainfluenzae 1 729 1366 0 species 0 no rank 1 493 2609962 species 0 1 Haemophilus sp. oral taxon 036 712310 493 Haemophilus pittmaniae 1 249188 495 species 0 genus 1 15 0 416916 1798 Aggregatibacter 3 species 0 714 1154 1 Aggregatibacter actinomycetemcomitans 1 Aggregatibacter aphrophilus 732 629 0 species genus 7 0 1 Glaesserella 2 1230 2094023 738 1223 1 Glaesserella parasuis 0 species 1706369 8378 29 Cellvibrionales order 1 0 24 1177 1706372 4 Halieaceae family 36 0 1 1 0 15 genus 1217416 1141 3 Halioglobus 1 Halioglobus pacificus 930806 508 0 species Halioglobus japonicus 1 930805 618 species 0 1706373 2099 Microbulbiferaceae 5 family 0 6 1 2093 48073 Microbulbifer 4 genus 0 24 1 0 species 1769779 718 1 Microbulbifer aggregans species 0 1 Microbulbifer agarilyticus 260552 732 252514 619 1 Microbulbifer thermotolerans 0 species family 1 0 14 1706375 1217 7 Spongiibacteraceae 319 1434050 Zhongshania 2 0 6 1 genus 313 1470434 Zhongshania aliphaticivorans 1 species 0 Spongiibacter 2 630749 296 1 0 6 genus 1 2631504 290 no rank 0 species 0 290 1620392 1 Spongiibacter sp. IMCC21906 Oceanicoccus 2 588 1084558 1 0 6 genus 0 species Oceanicoccus sagamiensis 1 716816 582 Cellvibrionaceae 12 1706371 3861 32 0 1 family Cellvibrio 4 10 1713 genus 1 0 14 1 Cellvibrio japonicus 155077 489 0 species 2 2624793 1210 0 no rank 1987723 701 1 Cellvibrio sp. PSBB006 0 species 1945512 509 1 Cellvibrio sp. PSBB023 0 species genus 0 8 1 2 Teredinibacter 2425 521 species 0 2426 513 Teredinibacter turnerae 1 2 Agarilytica 2036021 745 genus 0 1 1 0 species 1737490 744 1 Agarilytica rhodophyticola 2 Simiduia 473 447467 genus 1 0 1 species 0 447471 472 Simiduia agarivorans 1 1 377 316625 0 genus species 0 1 Saccharophagus degradans 377 86304 518 1775403 Nevskiales 4 order 4 0 1 0 family 2 2689614 499 Steroidobacter 2 469322 499 genus 1 2 0 0 species 1 Steroidobacter denitrificans 497 465721 family 0 568386 15 Sinobacteraceae 1 33410 135614 Xanthomonadales 53 order 1 355 0 1 76 0 family 5551 1775411 14 Rhodanobacteraceae 484 2233801 1 genus 0 Xanthomonadales bacterium D13 1 484 2021234 species 0 genus 0 19 1 2 Luteibacter 655 242605 1 Luteibacter rhizovicinus 242606 636 0 species 8 0 1 genus 2 Frateuria 70411 489 species 0 481 81475 Frateuria aurantia 1 Dokdonella 2 323413 503 genus 1 36 0 1 Dokdonella koreensis 467 323415 species 0 231454 2563 Dyella 4 genus 1 0 47 1379159 839 1 Dyella jiangningensis species 0 445710 809 1 Dyella thiooxydans 0 species 0 species Dyella japonica 1 868 231455 genus 0 3 1 2 Rhodanobacter 75309 781 666685 778 1 Rhodanobacter denitrificans species 0 32033 27504 38 Xanthomonadaceae family 1 348 0 338 10832 17 Xanthomonas 1 456 0 genus species 0 1985254 410 1 Xanthomonas phaseoli 1 Xanthomonas vasicola 56459 359 species 0 Xanthomonas vesicatoria 1 433 56460 0 species 425 29447 Xanthomonas albilineans 1 species 0 0 species 1 Xanthomonas translucens 343 874 species 0 413 366650 Xanthomonas alfalfae 1 506 56454 1 Xanthomonas hortorum species 0 Xanthomonas euvesicatoria 1 456327 378 0 species 53413 307 1 Xanthomonas axonopodis species 0 2 2142 643453 0 species group Xanthomonas fuscans 1 552 366648 species 0 species 0 1590 346 Xanthomonas citri 1 339 1744 1 Xanthomonas campestris species 0 572 56458 1 Xanthomonas sacchari species 0 species 0 347 859 Xanthomonas oryzae 1 species 0 Xanthomonas fragariae 1 48664 404 Xanthomonas perforans 1 550 442694 0 species 0 179 1 genus Stenotrophomonas 9 10248 40323 species group 0 4843 995085 1 species 0 1 Stenotrophomonas maltophilia 4843 40324 0 species Stenotrophomonas acidaminiphila 1 128780 1100 0 no rank 2646 196198 4 species 0 761 1904944 Stenotrophomonas sp. LM091 1 1 Stenotrophomonas sp. MYb57 606 1827305 0 species species 0 2005046 464 1 Stenotrophomonas sp. WZN-1 species 0 Stenotrophomonas sp. KCTC 12332 1 1793721 815 Stenotrophomonas rhizophila 1 697 216778 0 species 783 83617 1 Stenotrophomonas nitritireducens species 0 2370 645 1 0 genus 0 species Xylella fastidiosa 1 2371 645 3026 68 Lysobacter 5 1 0 27 genus 1 Lysobacter capsici 860 435897 0 species 69 800 1 Lysobacter enzymogenes 0 species 0 species Lysobacter antibioticus 1 84531 701 1 Lysobacter gummosus 262324 638 species 0 83614 492 2 Luteimonas 1 0 1 genus species 0 1 Luteimonas sp. 100111 491 2006110 1913 83618 3 Pseudoxanthomonas 1 9 0 genus 0 species 415229 718 Pseudoxanthomonas spadix 1 314722 1186 1 Pseudoxanthomonas suwonensis 0 species 106 Alteromonadales 43760 135622 1 0 173 order family 1 64 0 12074 267890 25 Shewanellaceae genus 1 212 0 24 Shewanella 22 12010 Shewanella woodyi 1 604 60961 species 0 413 404011 1 Shewanella piezotolerans 0 species species 0 1 Shewanella marisflavi 260364 479 Shewanella halifaxensis 1 271098 503 0 species 0 species 1 Shewanella sediminis 271097 513 0 species 367 56812 Shewanella frigidimarina 1 0 species 62322 1184 Shewanella baltica 1 species 0 Shewanella putrefaciens 1 24 509 1 Shewanella japonica 93973 646 species 0 336 70864 Shewanella pealeana 1 0 species 0 species Shewanella violacea 1 575 60217 0 species 60478 768 Shewanella amazonensis 1 253 192073 Shewanella denitrificans 1 species 0 1 Shewanella psychrophila 225848 641 0 species 0 species 359303 720 Shewanella loihica 1 70863 275 1 Shewanella oneidensis 0 species 2544 196818 6 0 no rank 489 351745 1 Shewanella sp. W3-18-1 species 0 0 species 1 Shewanella sp. Pdp11 2059264 412 1 Shewanella sp. MR-4 60480 357 species 0 species 0 2029986 306 Shewanella sp. WE21 1 Shewanella sp. MR-7 1 565 60481 species 0 0 species 1 Shewanella sp. ANA-3 415 94122 Shewanella bicestrii 1 2018305 468 species 0 1 47 0 family 267888 10137 Pseudoalteromonadaceae 25 10090 53246 24 Pseudoalteromonas 0 198 1 genus 504 247523 Pseudoalteromonas aliena 1 0 species species 0 Pseudoalteromonas piratica 1 1348114 713 species 0 Pseudoalteromonas marina 1 309 267375 0 species Pseudoalteromonas translucida 1 166935 211 1 Pseudoalteromonas rubra 43658 498 0 species no rank 0 194690 2320 5 283699 573 Pseudoalteromonas sp. Bsw20308 1 0 species Pseudoalteromonas sp. SM9913 1 234831 351 0 species 0 species 1 Pseudoalteromonas sp. 13-15 415 1761891 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 523 1720343 species 0 0 species 1514074 458 Pseudoalteromonas sp. NC201 1 394751 360 1 Pseudoalteromonas arctica species 0 species 0 1 Pseudoalteromonas issachenkonii 152297 333 228 252 1 Pseudoalteromonas haloplanktis 0 species Pseudoalteromonas atlantica 1 288 637 0 species 0 species Pseudoalteromonas spongiae 1 298657 574 1 Pseudoalteromonas tetraodonis 352 43659 species 0 Pseudoalteromonas luteoviolacea 1 43657 539 species 0 28107 314 1 Pseudoalteromonas espejiana 0 species species 0 Pseudoalteromonas tunicata 1 314281 620 0 species 1 Pseudoalteromonas piscicida 43662 470 0 species 255 28109 Pseudoalteromonas nigrifaciens 1 Pseudoalteromonas phenolica 1 353 161398 species 0 Pseudoalteromonas agarivorans 1 278 176102 species 0 family 4 0 1 267891 591 Moritellaceae 3 1 0 1 genus 58050 587 2 Moritella Moritella viscosa 1 586 80854 species 0 101 0 1 family 72275 14050 30 Alteromonadaceae 1 0 93 genus 226 5075 10 Alteromonas 0 species 589873 547 Alteromonas australica 1 0 species 570 233316 1 Alteromonas stellipolaris 1 Alteromonas addita 287094 387 0 species species 0 314275 868 1 Alteromonas mediterranea 0 no rank 3 2614992 1118 species 0 1 Alteromonas sp. RW2A1 1917158 372 0 species Alteromonas sp. Mac1 1 1777491 380 Alteromonas sp. MB-3u-76 1 366 2058133 species 0 1 Alteromonas macleodii 1054 28108 species 0 species 0 438 715451 1 Alteromonas naphthalenivorans 1 0 150 genus 2742 6113 Marinobacter 10 1 Marinobacter psychrophilus 330734 442 species 0 3 83889 1935 no rank 0 species 0 1 Marinobacter sp. LQ44 829 1749259 Marinobacter sp. BSs20148 1 496 490759 0 species 0 species 610 1671721 Marinobacter sp. CP1 1 species 0 660 1874317 Marinobacter salinus 1 species 0 1 Marinobacter salarius 639 1420917 species 0 1 Marinobacter adhaerens 1033846 632 0 species 1420916 433 1 Marinobacter similis 0 species Marinobacter hydrocarbonoclasticus 1 2743 1222 261825 493 2 Agarivorans 0 2 1 genus 0 species 680279 491 Agarivorans gilvus 1 550 1621534 Paraglaciecola 2 1 2 0 genus 1 Paraglaciecola psychrophila 548 326544 0 species Lacimicrobium 2 1751872 950 7 0 1 genus species 0 1 Lacimicrobium alkaliphilum 943 1526571 genus 1 23 0 768 89404 Glaciecola 3 species 0 300231 365 1 Glaciecola nitratireducens 2618684 380 1 no rank 0 0 species 1 Glaciecola sp. 4H-3-7+YE-5 380 983545 Idiomarinaceae 6 1136 267893 1 0 30 family 16 0 1 genus Idiomarina 5 1106 135575 Idiomarina loihiensis 1 333 135577 0 species 1096243 178 Idiomarina piscisalsi 1 0 species 2614829 579 2 no rank 0 0 species 1 Idiomarina sp. X4 211 2055892 species 0 1 Idiomarina sp. OT37-5b 2100422 368 9 Colwelliaceae 267889 3229 family 20 0 1 2741 28228 6 Colwellia 1 0 17 genus 28229 545 Colwellia psychrerythraea 1 species 0 Colwellia beringensis 1 1967665 500 species 0 no rank 0 196834 1679 3 species 0 58049 510 1 Colwellia sp. MT41 species 0 609 1816219 1 Colwellia sp. PAMC 21821 species 0 1 Colwellia sp. PAMC 20917 560 1816218 2 Thalassotalea 1518149 468 2 0 1 genus 1763536 466 Thalassotalea crassostreae 1 species 0 Psychromonadaceae 4 267894 1471 family 1 0 1 67572 1470 3 Psychromonas genus 1 0 16 1 Psychromonas ingrahamii 357794 718 species 0 no rank 0 1 2614957 736 Psychromonas sp. CNPT3 1 736 314282 species 0 1 2 0 family 899 267892 3 Ferrimonadaceae 44011 897 2 Ferrimonas 18 0 1 genus 44012 879 1 Ferrimonas balearica 0 species 367 135615 4 Cardiobacteriales 3 0 1 order 868 364 3 Cardiobacteriaceae family 0 1 1 2 Dichelobacter 869 363 genus 0 3 1 1 Dichelobacter nodosus 870 360 species 0 Betaproteobacteria 348 28216 200948 class 1 467 0 order 1 242 0 206389 9383 22 Rhodocyclales 75787 2355 Rhodocyclaceae 6 50 0 1 family genus 51 0 1 2 Aromatoleum 441 551759 551760 390 Aromatoleum aromaticum 1 species 0 0 no rank 75788 601 1 species 0 1 Rhodocyclaceae bacterium 1898103 601 2 Azospira 146937 1263 genus 1 30 0 species 0 1233 146939 Azospira oryzae 1 2008794 6220 Zoogloeaceae 12 165 0 1 family 5 Azoarcus 2509 12960 0 67 1 genus no rank 0 2 2629479 1129 0 species 748247 565 Azoarcus sp. KH32C 1 species 0 198107 564 Azoarcus sp. CIB 1 0 species 740 418699 1 Azoarcus olearius 0 species 573 2067960 1 Azoarcus sp. SY39 genus 0 114 1 33057 3546 Thauera 6 1 Thauera humireducens 1134435 642 species 0 0 species Thauera chlorobenzoica 1 96773 480 59405 514 Thauera aromatica 1 0 species 2 2609274 1796 no rank 0 2005884 959 1 Thauera sp. K11 0 species Thauera sp. MZ1T 1 85643 837 species 0 1 0 8 family Azonexaceae 3 566 2008795 2 Dechloromonas 558 73029 genus 1 0 1 557 259537 Dechloromonas aromatica 1 0 species Burkholderiales 232 80840 156817 0 2051 1 order 1 0 623 family 80864 35537 Comamonadaceae 57 genus 3 0 1 Polaromonas 3 52972 1610 species 0 1 Polaromonas naphthalenivorans 216465 768 2638319 839 1 no rank 0 0 species 296591 839 1 Polaromonas sp. JS666 0 genus 2678886 886 1 0 species 2116657 886 Melaminivora sp. SC2-7 1 2 Diaphorobacter 829 238749 genus 0 24 1 species 0 Diaphorobacter polyhydroxybutyrativorans 1 805 1546149 2490452 878 2 0 genus Comamonadaceae bacterium B1 1 1458426 418 species 0 1458425 460 1 Comamonadaceae bacterium A1 species 0 201096 808 Alicycliphilus 2 6 0 1 genus species 0 802 179636 Alicycliphilus denitrificans 1 1 6 0 genus 736 665874 Limnohabitans 3 0 no rank 2 730 2626134 Limnohabitans sp. 103DPR2 1 1678129 253 0 species 1 Limnohabitans sp. 63ED37-2 477 1678128 0 species genus 1 21 0 2 Melaminivora 1649468 832 0 no rank 1 2641902 811 1 Melaminivora sp. SC2-9 811 2109913 species 0 0 17 1 genus 1844 174951 Ramlibacter 2 1 Ramlibacter tataouinensis 94132 1827 0 species 1436289 360 1 0 genus 0 species 1436290 360 1 Candidatus Symbiobacter mobilis genus 0 8 1 Simplicispira 2 450 352450 species 0 2109915 442 Simplicispira sp. SC1-8 1 genus 1 0 28 28065 3129 Rhodoferax 5 0 species 828 1484693 Rhodoferax saidenbachensis 1 1 Rhodoferax antarcticus 720 81479 species 0 658 192843 Rhodoferax ferrireducens 1 0 species 0 species 1 Rhodoferax koreense 1842727 895 624 364316 2 Verminephrobacter 20 0 1 genus 0 species 364317 604 Verminephrobacter eiseniae 1 2 1437 219181 genus 0 1 Ottowia sp. KADR8-3 676 2109914 species 0 0 no rank 1 2645081 761 species 0 1658672 761 Ottowia sp. oral taxon 894 1 genus 0 276 1 6224 12916 Acidovorax 9 0 no rank 2684926 3272 4 1858609 696 Acidovorax sp. T1 1 0 species Acidovorax sp. KKS102 1 358220 1078 species 0 232721 671 Acidovorax sp. JS42 1 species 0 1842533 827 Acidovorax sp. RAC01 1 species 0 0 species 80869 647 1 Acidovorax citrulli 0 species Acidovorax ebreus 1 721785 728 553814 630 Acidovorax sp. NA3 1 species 0 Acidovorax avenae 1 80867 671 0 species 0 117 1 genus 5 Delftia 80865 4057 900 80866 Delftia acidovorans 1 0 species 2613839 1974 2 0 no rank 742013 982 Delftia sp. Cs1-4 1 0 species 992 1920191 Delftia sp. HK171 1 species 0 1 Delftia tsuruhatensis 180282 1066 species 0 Variovorax 5 34072 4459 132 0 1 genus 436515 878 Variovorax boronicumulans 1 species 0 Variovorax paradoxus 1 1971 34073 species 0 no rank 0 2 663243 1478 species 0 1 Variovorax sp. PAMC 28711 514 1795631 1 Variovorax sp. PMC12 2126319 964 0 species 1 0 34 genus 4 Comamonas 283 3783 0 species 1 Comamonas testosteroni 285 1838 1 Comamonas serinivorans 1082851 617 0 species 1 Comamonas kerstersii 225992 1294 0 species genus 27 0 1 4 Hydrogenophaga 47420 1968 species 0 469 1763535 1 Hydrogenophaga crassostreae 2 2610897 1472 no rank 0 0 species 1 Hydrogenophaga sp. RAC07 1842537 560 species 0 1 Hydrogenophaga sp. PBC 912 795665 Alcaligenaceae 42 32399 506 family 1 0 301 genus 1 13 0 290425 1392 3 Advenella 0 species 302406 656 Advenella mimigardefordensis 1 310575 723 Advenella kashmirensis 1 species 0 0 11 1 genus 359336 720 2 Castellaniella 1 Castellaniella defragrans 709 75697 0 species 300 90243 Oligella 2 1 0 4 genus 296 90245 1 Oligella urethralis 0 species genus 22 0 1 Orrella 2 866 1921582 0 species 1 Orrella dioscoreae 1851544 844 genus 0 488 1 17 Bordetella 517 14084 1331258 864 Bordetella pseudohinzii 1 0 species 0 species Bordetella bronchiseptica 1 1726 518 0 species 663 520 Bordetella pertussis 1 no rank 0 1 859 2630031 0 species 1697043 859 1 Bordetella sp. H567 519 884 Bordetella parapertussis 1 species 0 0 species 670 1416803 1 Bordetella genomosp. 9 Bordetella genomosp. 13 1 997 463040 0 species Bordetella bronchialis 1 463025 1050 0 species Bordetella genomosp. 6 1 463024 944 species 0 0 species 677 463014 Bordetella flabilis 1 species 0 858 123899 1 Bordetella trematum 0 species 468 521 Bordetella avium 1 94624 748 1 Bordetella petrii species 0 Bordetella genomosp. 8 1 1416806 1008 species 0 1 Bordetella hinzii 103855 768 species 0 0 species 35814 412 Bordetella holmesii 1 1529 507 Alcaligenes 2 genus 2 0 1 species 0 511 1527 1 Alcaligenes faecalis 1472344 353 1 genus 0 353 1472345 1 Basilea psittacipulmonis species 0 2 Pusillimonas 305976 643 genus 2 0 1 no rank 0 1 641 2640016 641 1007105 1 Pusillimonas sp. T7-7 species 0 29574 802 Taylorella 3 genus 1 12 0 0 species Taylorella asinigenitalis 1 84590 413 377 29575 Taylorella equigenitalis 1 species 0 269 1100891 1 genus 0 0 species Paenalcaligenes hominis 1 269 643674 428 0 1 genus 6 Achromobacter 11140 222 0 species Achromobacter denitrificans 1 32002 2443 0 no rank 1 2626865 917 0 species 1758194 917 Achromobacter sp. AONIH1 1 0 species Achromobacter xylosoxidans 1 85698 4164 species 0 217203 1947 1 Achromobacter spanius Achromobacter insolitus 1 217204 1241 0 species 3414 80841 2 0 no rank 1 Burkholderiales bacterium YL45 3092 1834205 species 0 0 species 1 Burkholderiales bacterium GJ-E10 322 1469502 family 1 0 155 20198 75682 Oxalobacteraceae 29 genus 1 172 0 Herbaspirillum 6 963 4706 no rank 0 2624150 670 1 0 species 2025949 670 Herbaspirillum sp. meg3 1 0 species Herbaspirillum frisingense 1 1050 92645 964 1313 1 Herbaspirillum seropedicae species 0 species 0 80842 809 1 Herbaspirillum rubrisubalbicans 341045 692 1 Herbaspirillum hiltneri 0 species 202907 3522 4 Collimonas 1 57 0 genus species 0 1 Collimonas arenae 279058 1010 species 0 1 Collimonas fungivorans 1169 158899 279113 1286 1 Collimonas pratensis species 0 genus 1 8 0 Oxalobacter 2 1271 846 847 1263 1 Oxalobacter formigenes 0 species genus 0 73 1 Janthinobacterium 7 29580 4943 0 no rank 3116 2610881 4 1938606 1001 Janthinobacterium sp. LM6 1 species 0 species 0 1 Janthinobacterium sp. Marseille 375286 621 1 Janthinobacterium sp. B9-8 651 1236179 0 species Janthinobacterium sp. 1_2014MBL_MicDiv 1 1644131 843 0 species 55508 694 Janthinobacterium agaricidamnosum 1 species 0 1 Janthinobacterium svalbardensis 368607 1060 species 0 1 0 27 genus 303379 830 3 Herminiimonas Herminiimonas arsenicoxydans 1 204773 392 0 species 1809410 411 1 Herminiimonas arsenitoxidans 0 species 149698 4771 6 Massilia genus 0 169 1 species 0 1141883 774 Massilia putida 1 0 species 1 Massilia sp. ZMN-3 2072590 1186 0 species Massilia sp. B2 1 780 2045208 no rank 0 2609279 1862 2 1678028 1063 1 Massilia sp. NR 4-1 species 0 1 Massilia sp. WG5 799 1707785 0 species 0 no rank 8467 224471 17 212743 818 2 Rhizobacter genus 1 0 10 species 0 946333 808 Rhizobacter gummiphilus 1 genus 0 38 1 2 Rubrivivax 846 28067 Rubrivivax gelatinosus 1 28068 808 0 species species 0 413882 811 1 [Polyangium] brachysporum 2 Paucibacter 983 318147 14 0 1 genus 0 no rank 1 2642959 969 0 species 1 Paucibacter sp. KCTC 42545 969 1768242 93681 1175 2 Roseateles genus 1 0 16 1 Roseateles depolymerans 76731 1159 species 0 49 0 1 genus 2 Mitsuaria 918 65047 869 2648776 1 0 no rank 0 species 1 Mitsuaria sp. 7 869 1658665 genus 30 0 1 316612 834 2 Methylibium 804 105560 1 Methylibium petroleiphilum 0 species genus 0 20 1 Thiomonas 2 1012 32012 0 species 1 Thiomonas intermedia 926 992 0 33 1 genus 88 1070 2 Leptothrix species 0 Leptothrix cholodnii 1 34029 1037 family 1 357 0 84 Burkholderiaceae 54751 119060 126 0 1 genus 10 Pandoraea 4987 93217 0 species 93222 474 1 Pandoraea sputorum 1 Pandoraea thiooxydans 431 445709 species 0 0 species Pandoraea vervacti 1 656178 563 505 93221 Pandoraea pulmonicola 1 species 0 Pandoraea oxalativorans 1 573737 563 0 species 1 Pandoraea apista 93218 445 0 species 0 species Pandoraea faecigallinarum 1 505 656179 0 species 1 Pandoraea pnomenusa 667 93220 species 0 Pandoraea norimbergensis 1 708 93219 genus 0 2571159 434 1 412963 434 Paraburkholderia rhizoxinica 1 0 species genus 1 0 344 9 Cupriavidus 106589 8612 0 species Cupriavidus metallidurans 1 119219 623 Cupriavidus gilardii 1 82541 714 0 species Cupriavidus pinatubonensis 1 248026 930 0 species species 0 1 Cupriavidus sp. USMAA1020 367825 1078 species 0 1574 106590 Cupriavidus necator 1 0 no rank 2350 2640874 2 species 0 876364 1264 Cupriavidus sp. USMAA2-4 1 species 0 1 Cupriavidus sp. USMAHM13 1389192 1086 68895 999 1 Cupriavidus basilensis 0 species 44013 908 4 Polynucleobacter 2 0 1 genus 1 Polynucleobacter duraquae 312 1835254 0 species 1 Polynucleobacter asymbioticus 576611 453 0 species 1 Polynucleobacter necessarius 576610 141 species 0 genus 1 0 123 Ralstonia 5 48736 6442 0 species Ralstonia insidiosa 1 190721 1022 species 0 329 1545 Ralstonia pickettii 1 species 0 1 Ralstonia solanacearum 2852 305 species 0 Ralstonia mannitolilytica 1 105219 900 1291 0 1 genus 41 Burkholderia 32008 25396 0 species group 87882 12886 19 0 species 1 Burkholderia ambifaria 152480 516 species 0 Burkholderia multivorans 1 87883 738 Burkholderia diffusa 1 488732 303 species 0 0 species 1 Burkholderia cepacia 292 2133 species 0 Burkholderia latens 1 402 488446 1 Burkholderia pseudomultivorans 1207504 370 0 species 0 species 488447 416 1 Burkholderia contaminans 1 Burkholderia territorii 325 1503055 0 species 152500 265 1 Burkholderia dolosa species 0 species 0 614 482957 1 Burkholderia lata 1249 101571 Burkholderia ubonensis 1 species 0 species 0 1 Burkholderia stabilis 95485 682 488731 316 1 Burkholderia seminalis species 0 1503054 355 Burkholderia stagnalis 1 species 0 Burkholderia pyrrocinia 1 60550 285 0 species 0 species 1 Burkholderia metallica 488729 400 Burkholderia vietnamiensis 1 60552 827 species 0 95486 2296 1 Burkholderia cenocepacia species 0 0 species 394 265293 [Pseudomonas] mesoacidophila 1 41899 568 Burkholderia plantarii 1 0 species 11 5120 2613784 0 no rank Burkholderia sp. Bp5365 1 1740162 252 0 species 695 758796 1 Burkholderia sp. RPE67 0 species species 0 1097668 769 1 Burkholderia sp. YI23 458 1740163 Burkholderia sp. Bp7605 1 0 species Burkholderia sp. PAMC 28687 1 1795874 430 species 0 0 species Burkholderia sp. KJ006 1 416344 408 0 species Burkholderia sp. CCGE1001 1 640510 426 0 species Burkholderia sp. HB1 1 469 1678678 Burkholderia sp. CCGE1003 1 640512 501 species 0 1468409 253 1 Burkholderia sp. 2002721687 0 species 1795043 459 1 Burkholderia sp. PAMC 26561 species 0 0 species group 111527 3321 7 57975 862 1 Burkholderia thailandensis species 0 0 species 1637841 229 Burkholderia sp. MSMB0852 1 1637831 187 1 Burkholderia sp. MSMB617WGS 0 species Burkholderia sp. MSMB0266 1 220 1637837 0 species 342113 472 Burkholderia oklahomensis 1 0 species 1 Burkholderia pseudomallei 28450 1063 species 0 0 species 1 Burkholderia mallei 13373 288 1081 337 Burkholderia glumae 1 0 species 1 Burkholderia gladioli 1129 28095 0 species 518 1827195 1 genus 0 1 Burkholderia sp. RPE64 518 758793 species 0 genus 137 0 1 7097 1822464 12 Paraburkholderia 615 169430 1 Paraburkholderia hospita species 0 1 Paraburkholderia sprentiae 948107 596 species 0 species 0 Paraburkholderia aromaticivorans 1 2026199 639 species 0 649 134537 1 Paraburkholderia fungorum 1 Paraburkholderia terrae 311230 588 0 species Paraburkholderia phenoliruptrix 1 458 252970 0 species 261302 589 Paraburkholderia phytofirmans 1 0 species 1 2615204 414 0 no rank 414 1926494 Paraburkholderia sp. SOS3 1 0 species 148447 510 1 Paraburkholderia phymatum species 0 1 Paraburkholderia caribensis 75105 1093 0 species 36873 809 Paraburkholderia xenovorans 1 species 0 1 0 239 order 206351 19915 36 Neisseriales family 1 0 107 Neisseriaceae 22 481 11859 538 894 2 Eikenella genus 0 5 1 539 889 1 Eikenella corrodens species 0 Snodgrassella 2 1193515 848 genus 1 0 1 1196083 847 Snodgrassella alvi 1 species 0 genus 0 71 419 1 species 0 419 72 Simonsiella muelleri 1 Neisseria 12 482 8197 genus 0 119 1 0 species 1853278 584 1 Neisseria sp. 10023 692 488 1 Neisseria mucosa species 0 0 species Neisseria gonorrhoeae 1 485 507 species 0 1 Neisseria weaveri 28091 528 Neisseria lactamica 1 486 715 0 species 1 Neisseria meningitidis 487 2060 0 species Neisseria sicca 1 490 653 0 species 2 1208 2623750 0 no rank species 0 469 1853276 Neisseria sp. 10022 1 1 Neisseria sp. KEM232 739 655307 0 species 1 Neisseria zoodegmatis 326523 488 0 species Neisseria elongata 1 495 643 0 species Vitreoscilla 3 59 992 genus 16 0 1 Vitreoscilla filiformis 1 740 63 0 species no rank 0 236 2627922 1 1 Vitreoscilla sp. C1 96942 236 species 0 no rank 0 421605 402 1 402 2052837 1 Neisseriaceae bacterium DSM 100970 0 species Chromobacteriaceae 13 7817 1499392 family 126 0 1 568394 924 Pseudogulbenkiania 2 0 14 1 genus 2642558 910 1 0 no rank 910 748280 1 Pseudogulbenkiania sp. NH8B 0 species 11 0 1 genus 945 187 2 Aquaspirillum no rank 0 1 2620219 934 0 species 1938604 934 Aquaspirillum sp. LM1 1 no rank 0 4 90153 4264 1 0 52 genus 4264 535 4 Chromobacterium species 0 536 1225 1 Chromobacterium violaceum 0 no rank 1 2641838 1422 2059672 1422 1 Chromobacterium sp. ATCC 53434 0 species species 0 Chromobacterium vaccinii 1 1108595 1565 genus 0 15 1 448 885864 Jeongeupia 2 2619593 433 1 0 no rank Jeongeupia sp. USM3 1 1906741 433 species 0 genus 0 1 1 2 Laribacter 168470 1110 168471 1109 1 Laribacter hongkongensis 0 species 11809 32003 43 Nitrosomonadales 0 59 1 order 0 family 1156 2772226 4 2 Sulfuriferula 585 1778653 1 3 0 genus 0 no rank 1 582 2637784 species 0 Sulfuriferula sp. AH1 1 582 1985873 2 Sulfuricella 571 935200 genus 1 24 0 1 Sulfuricella denitrificans 649841 547 species 0 family 4 0 1 2008790 393 Thiobacillaceae 3 genus 0 11 1 Thiobacillus 2 919 389 378 36861 1 Thiobacillus denitrificans species 0 1 18 0 family 2008793 1571 Sterolibacteriaceae 5 2 Sulfuritalea 1054211 848 genus 1 0 13 species 0 748811 835 1 Sulfuritalea hydrogenivorans 2 Methyloversatilis 378210 705 7 0 1 genus 0 no rank 2639971 698 1 1 Methyloversatilis sp. RAC08 1842540 698 species 0 family 0 13 1 32011 3274 Methylophilaceae 13 2 1679002 593 0 genus 1 Candidatus Methylopumilus turicensis 266 1581680 species 0 327 1581557 Candidatus Methylopumilus planktonicus 1 species 0 81682 1181 3 Methylovorus 17 0 1 genus 0 no rank 1 652 2634027 species 0 Methylovorus sp. MP688 1 652 887061 0 species 266009 512 Methylovorus glucosotrophus 1 359407 615 Methylotenera 3 genus 0 46 1 359408 305 1 Methylotenera mobilis 0 species 0 species 1 Methylotenera versatilis 1055487 264 1 2 0 genus 2 Methylophilus 16 407 405 2630143 1 no rank 0 species 0 1662285 405 1 Methylophilus sp. TWE2 genus 1 0 13 404 465 Methylobacillus 2 0 species Methylobacillus flagellatus 1 405 452 206379 4078 Nitrosomonadaceae 12 0 18 1 family genus 0 8 1 4 Nitrosospira 1214 35798 0 species 1231 426 Nitrosospira multiformis 1 Nitrosospira lacus 1 1288494 350 0 species species 0 35799 430 1 Nitrosospira briensis 8 0 1 genus 7 Nitrosomonas 914 2846 species 0 44574 396 Nitrosomonas communis 1 0 species 916 414 Nitrosomonas eutropha 1 2 986 2609265 0 no rank species 0 1 Nitrosomonas sp. Is79A3 261292 484 0 species 1 Nitrosomonas sp. AL212 153948 502 Nitrosomonas europaea 1 915 573 0 species 0 species 44577 469 1 Nitrosomonas ureae 13 0 1 family 5 Gallionellaceae 1278 90627 776 314343 2 Sideroxydans 1 11 0 genus 1 Sideroxydans lithotrophicus 63745 765 0 species genus 3 0 1 2 Gallionella 489 96 370405 486 Gallionella capsiferriformans 1 species 0 12 119066 1626 no rank 0 1 15 0 genus Kinetoplastibacterium 6 860 33055 1 Candidatus Kinetoplastibacterium desouzaii 166 994692 0 species 0 species 994696 165 Candidatus Kinetoplastibacterium oncopeltii 1 1 Candidatus Kinetoplastibacterium crithidii 33056 272 species 0 1 Candidatus Kinetoplastibacterium galatii 994695 89 0 species 233181 153 1 Kinetoplastibacterium blastocrithidii species 0 591 327159 2 Candidatus Accumulibacter genus 1 35 0 species 0 327160 556 1 Candidatus Accumulibacter phosphatis Candidatus Profftella 2 1381133 121 1 0 6 genus 1 Candidatus Profftella armatura 669502 115 species 0 1301080 39 1 genus 0 species 0 Candidatus Nasuia deltocephalinicola 1 1160784 39 0 genus 189384 15 1 Candidatus Tremblaya princeps 1 189385 15 species 0 0 no rank 33809 931 2 0 species beta proteobacterium CB 1 459 543913 1904640 472 Betaproteobacteria bacterium GR16-43 1 species 0 6 1807140 1767 class 0 Acidithiobacillales 6 1767 225057 order 1 24 0 family 0 7 1 5 Acidithiobacillaceae 1743 225058 119977 1736 Acidithiobacillus 4 genus 1 9 0 species 0 Acidithiobacillus ferrooxidans 1 920 530 Acidithiobacillus caldus 1 33059 469 species 0 1 Acidithiobacillus ferrivorans 160808 728 species 0 243055 28211 Alphaproteobacteria 550 class 1 880 0 0 94 1 order 20 Caulobacterales 9165 204458 19 Caulobacteraceae 9071 76892 family 0 136 1 160 81440 1 no rank 0 1759059 160 1 Caulobacteraceae bacterium OTSz_A_272 0 species 1 74 0 genus Brevundimonas 7 3569 41275 0 species Brevundimonas vesicularis 1 41276 464 0 species 640 588932 Brevundimonas naejangsanensis 1 species 0 Brevundimonas subvibrioides 1 560 74313 3 2622653 1831 no rank 0 1 Brevundimonas sp. DS20 1532555 463 species 0 0 species 1827469 646 1 Brevundimonas sp. GW460-12-10-14-LB2 1938605 722 1 Brevundimonas sp. LM2 0 species genus 1 0 5 Phenylobacterium 2 20 719 Phenylobacterium zucineum 1 284016 714 0 species genus 1 0 82 Caulobacter 6 75 3877 662 69666 Caulobacter mirabilis 1 0 species species 0 1 Caulobacter henricii 598 69395 88688 480 1 Caulobacter segnis 0 species 155892 1420 1 Caulobacter vibrioides 0 species 0 no rank 1 635 2648921 species 0 366602 635 Caulobacter sp. K31 1 genus 0 2 1 76890 610 2 Asticcacaulis 0 species 78587 608 1 Asticcacaulis excentricus 1944 54526 Pelagibacterales 7 order 1 0 2 1 0 1 family 5 Pelagibacteraceae 1655514 1402 genus 0 673 198251 2 1 Candidatus Pelagibacter ubique 198252 462 0 species 1 211 2647897 0 no rank species 0 211 1002672 Candidatus Pelagibacter sp. IMCC9063 1 1655516 728 2 no rank 0 368 744985 alpha proteobacterium HIMB59 1 0 species 859653 360 alpha proteobacterium HIMB5 1 0 species 1 540 2045213 genus 0 species 0 Candidatus Fonsibacter ubiquis 1 1925548 540 order 0 2 2800059 708 0 family 2800061 708 2 708 74317 2 Maricaulis genus 9 0 1 0 species 1 Maricaulis maris 699 74318 6 2800060 1634 order 0 0 11 1 family 69657 1634 6 Hyphomonadaceae genus 1 10 0 85 1000 Hyphomonas 3 0 no rank 1 396 2630699 396 1906738 Hyphomonas sp. Mor2 1 0 species species 0 1 Hyphomonas neptunium 594 81032 genus 1 0 1 2 Hirschia 2723 623 1 Hirschia baltica 2724 622 0 species 418 0 1 order 204441 36783 Rhodospirillales 67 family 1 0 365 Rhodospirillaceae 31 41295 19879 2 Haematospirillum 319 1804663 1 3 0 genus 0 species 1 Haematospirillum jordaniae 316 1549855 1 0 27 genus 2 Nitrospirillum 1543705 1488 Nitrospirillum amazonense 1 1461 28077 0 species genus 1 13 0 Magnetospira 2 669 1182780 no rank 0 1 2685734 656 species 0 656 1288970 1 Magnetospira sp. QH-2 1 31 0 genus 1287 1543704 Niveispirillum 2 Niveispirillum cyanobacteriorum 1 1612173 1256 0 species 1833 168934 Thalassospira 3 1 21 0 genus 0 species 1 Thalassospira sp. CSC3H3 964 2048283 0 species 220697 848 1 Thalassospira xiamenensis Magnetospirillum 5 13134 3968 genus 1 0 57 species 0 1 Magnetospirillum gryphiswaldense 55518 1311 Magnetospirillum magneticum 1 84159 965 0 species 0 no rank 2 1635 2617991 1639348 837 1 Magnetospirillum sp. ME-1 species 0 798 1663591 1 Magnetospirillum sp. XM-1 species 0 genus 2 0 1 1612157 375 Pararhodospirillum 2 Pararhodospirillum photometricum 1 1084 373 species 0 3 Rhodospirillum 1571 1081 genus 1 6 0 species 0 1085 725 Rhodospirillum rubrum 1 1 Rhodospirillum centenum 840 34018 0 species 2 Candidatus Endolissoclinum 446 1263978 1 0 1 genus species 0 1 Candidatus Endolissoclinum faulkneri 1263979 445 1 194 0 genus 191 6488 5 Azospirillum species 0 528244 1479 1 Azospirillum thiophilum 1923 192 1 Azospirillum brasilense species 0 species 0 Azospirillum humicireducens 1 1226968 598 species 0 Azospirillum lipoferum 1 2294 193 1 0 9 genus 2 Tistrella 171436 1070 1 Tistrella mobilis 1061 171437 species 0 family 1 0 201 433 16486 Acetobacteraceae 35 Gluconobacter 3 1983 441 0 25 1 genus 1305 442 1 Gluconobacter oxydans species 0 Gluconobacter albidus 1 653 318683 0 species 8 Acetobacter 434 5161 genus 1 48 0 subgenus 0 1 523 151157 species 0 435 523 Acetobacter aceti 1 Acetobacter pomorum 1 538 65959 species 0 species 0 1 Acetobacter senegalensis 614 446692 0 species Acetobacter oryzifermentans 1 497 1633874 0 species Acetobacter persici 1 1076596 556 species 0 640 104102 Acetobacter tropicalis 1 438 1745 1 Acetobacter pasteurianus 0 species Neoasaia 2 320496 473 1 14 0 genus 0 species 320497 459 Neoasaia chiangmaiensis 1 genus 0 62 1 125216 1741 3 Roseomonas Roseomonas gilardii 1 257708 857 0 species 0 no rank 1 2617492 822 822 2018065 1 Roseomonas sp. FDAARGOS_362 species 0 genus 0 19 1 Gluconacetobacter 2 89583 527 species 0 Gluconacetobacter diazotrophicus 1 33996 508 genus 0 2 1 153497 683 Kozakia 2 Kozakia baliensis 1 681 153496 species 0 364409 1616 Granulibacter 2 genus 41 0 1 species 0 1 Granulibacter bethesdensis 1575 364410 genus 39 0 1 Komagataeibacter 5 1434011 2576 1 Komagataeibacter xylinus 28448 1016 0 species 665 265960 1 Komagataeibacter nataicola species 0 species 0 1177712 477 1 Komagataeibacter medellinensis Komagataeibacter europaeus 1 33995 379 0 species 1602345 355 Parasaccharibacter 2 3 0 1 genus 1 Parasaccharibacter apium 1510841 352 species 0 genus 1 0 42 522 812 3 Acidiphilium species 0 524 402 1 Acidiphilium cryptum 62140 368 1 Acidiphilium multivorum 0 species 91914 358 Asaia 2 1 1 0 genus species 0 357 91915 Asaia bogorensis 1 0 301 1 order 204455 45454 Rhodobacterales 88 0 729 1 family 31989 45153 87 Rhodobacteraceae genus 0 700 1649279 1 0 species 1 Ruegeria mobilis 700 379347 genus 8 0 1 2 Sagittula 58842 1105 no rank 0 1097 2624628 1 Sagittula sp. P11 1 2009329 1097 0 species Dinoroseobacter 2 309512 629 1 10 0 genus 0 species 215813 619 1 Dinoroseobacter shibae 1 0 5 genus 433 188905 Jannaschia 2 2645469 428 1 no rank 0 0 species Jannaschia sp. CCS1 1 428 290400 Phaeobacter 5 302485 5341 0 77 1 genus 1 Phaeobacter inhibens 221822 1808 species 0 1 Phaeobacter piscinae 1174 1580596 0 species species 0 Phaeobacter gallaeciensis 1 1661 60890 0 species 1844006 621 Phaeobacter porticola 1 53945 1026 Octadecabacter 4 0 4 1 genus species 0 1 Octadecabacter arcticus 361 53946 250 1458307 Octadecabacter temperatus 1 0 species Octadecabacter antarcticus 1 1217908 411 species 0 1 0 17 genus Pelagibaca 2 823 360528 1250539 806 1 Pelagibaca abyssi species 0 genus 9 0 1 Ruegeria 3 97050 1403 species 0 89184 812 1 Ruegeria pomeroyi 2625375 582 1 0 no rank 0 species Ruegeria sp. TM1040 1 582 292414 644 74032 2 Antarctobacter 1 1 0 genus 0 species 74033 643 1 Antarctobacter heliothermus 2102 478070 4 Labrenzia 0 18 1 genus 0 no rank 2648686 1396 2 631 1674922 1 Labrenzia sp. CP4 species 0 Labrenzia sp. VG12 1 2021862 765 0 species 0 species Labrenzia aggregata 1 187304 688 1 527 1284657 0 genus species 0 527 1284658 Planktomarina temperata 1 1 0 1 genus Tateyamaria 2 508 299261 Tateyamaria omphalii 1 507 299262 0 species 0 genus 574 285107 1 1915078 574 Thioclava nitratireducens 1 species 0 1 0 2 genus 2 Roseovarius 74030 578 Roseovarius mucosus 1 576 215743 species 0 436357 16 Thalassococcus 1 0 genus no rank 0 1370 58840 2 species 0 684 1904441 1 Rhodobacteraceae bacterium species 0 Rhodobacteraceae bacterium QY30 1 2033435 686 12 0 1 genus 941 1097466 2 Defluviimonas 1 Defluviimonas alba 1335048 929 0 species 1609958 811 Confluentimicrobium 2 0 9 1 genus 802 2643318 1 0 no rank 0 species 1 Confluentimicrobium sp. EMB200-NS6 1609966 802 1263 60136 Sulfitobacter 3 0 6 1 genus 1 598 196795 0 no rank Sulfitobacter sp. AM1-D1 1 1917485 598 0 species Sulfitobacter pseudonitzschiae 1 1402135 659 0 species 875170 2648 Celeribacter 5 0 23 1 genus Celeribacter ethanolicus 1 1758178 541 species 0 0 species 845 1208324 1 Celeribacter indicus species 0 852 1411902 Celeribacter manganoxidans 1 1 Celeribacter marinus 1397108 387 species 0 2 0 1 genus 2 Halocynthiibacter 1579315 348 346 1579316 Halocynthiibacter arcticus 1 0 species genus 0 98 1 Paracoccus 9 6231 265 0 species Paracoccus sp. CBA4604 1 2065379 478 Paracoccus yeei 1 147645 987 0 species 610 246570 1 0 no rank species 0 1529068 610 Paracoccus sp. BM15 1 1 Paracoccus zhejiangensis 1077935 809 species 0 0 species 830 1945662 Paracoccus contaminans 1 species 0 34003 548 Paracoccus aminophilus 1 1 Paracoccus denitrificans 266 964 species 0 species 0 1 Paracoccus aminovorans 907 34004 1759396 562 1 0 genus 562 2622455 1 0 no rank 0 species 1 Marivivens sp. JLT3646 562 1920883 473 119541 1 0 genus Rhodobaca barguzinensis 1 441209 473 species 0 2 Pannonibacter 1427 227873 genus 0 23 1 1404 121719 Pannonibacter phragmitetus 1 species 0 1001 191028 Leisingera 2 genus 1 4 0 0 species 133924 997 Leisingera methylohalidivorans 1 0 genus 2 1045 2433 Roseobacter litoralis 1 42443 649 0 species 396 2434 Roseobacter denitrificans 1 0 species 0 15 1 genus 92944 1054 Ketogulonicigenium 3 0 species Ketogulonicigenium vulgare 1 92945 537 Ketogulonicigenium robustum 1 92947 502 0 species 34008 1897 4 Rhodovulum genus 0 20 1 35806 851 1 Rhodovulum sulfidophilum 0 species 2 1026 2631432 0 no rank Rhodovulum sp. MB263 1 458 308754 species 0 Rhodovulum sp. P5 1 1564506 568 0 species genus 4 0 1 Marinovum 2 833 367771 42444 829 Marinovum algicola 1 species 0 Rhodobacter 5 1060 3516 1 45 0 genus 0 species 734 1061 1 Rhodobacter capsulatus 0 species Rhodobacter sphaeroides 1 1063 1692 1045 196779 2 no rank 0 species 0 2033869 693 Rhodobacter sp. CZR27 1 0 species 1850250 352 1 Rhodobacter sp. LPB0142 2 263377 1403 genus 0 0 species 1 Thiobacimonas profunda 1229727 659 744 2640570 1 no rank 0 species 0 1 Yangia sp. CCB-MM3 744 1792508 159345 582 Roseibacterium 2 genus 1 1 0 0 species 1 Roseibacterium elongatum 159346 581 2211641 610 1 0 genus species 0 245188 610 Loktanella vestfoldensis 1 0 order 824 1921002 5 255 44746 1 0 family 1 255 204454 0 no rank species 0 endosymbiont of Acanthamoeba sp. UWC8 1 86106 255 family 0 4 1 2 Caedimonadaceae 2100208 260 1 1509243 256 genus 0 species 0 256 1509244 Candidatus Nucleicultrix amoebiphila 1 0 family 2 309 1777752 1521255 309 Candidatus Paracaedibacter 2 0 1 1 genus 308 91604 1 Candidatus Paracaedibacter acanthamoebae 0 species order 991 0 1 Rhizobiales 207 100184 356 45401 6537 19 Hyphomicrobiaceae family 1 90 0 genus 1 0 8 Hyphomicrobium 4 81 2419 0 species 1427356 860 Hyphomicrobium nitrativorans 1 946 2619925 1 no rank 0 species 0 Hyphomicrobium sp. MC1 1 946 717785 605 53399 Hyphomicrobium denitrificans 1 species 0 1 1 0 genus 119044 278 2 Filomicrobium 277 1608628 Candidatus Filomicrobium marinum 1 0 species genus 1 89 0 29407 686 Rhodoplanes 2 2619116 597 1 no rank 0 species 0 Rhodoplanes sp. Z2-YC6860 1 674703 597 0 63 1 genus 4 Devosia 1902 46913 196773 1839 3 0 no rank Devosia sp. I507 1 2083786 407 0 species species 0 821 1736675 1 Devosia sp. A16 species 0 611 1643450 1 Devosia sp. H5989 genus 0 8 1 Pelagibacterium 2 1082930 378 Pelagibacterium halotolerans 1 370 531813 species 0 2 Blastochloris 417 59282 0 17 1 genus 0 species Blastochloris viridis 1 400 1079 367 1068 2 Rhodomicrobium genus 0 3 1 0 species 1 Rhodomicrobium vannielii 1069 364 15 Methylobacteriaceae 10030 119045 family 1 0 44 3 3416 2282523 genus 0 408 1877 1 Methylobacterium extorquens 0 species species 0 1 Methylobacterium populi 223967 1030 0 species 1 Methylobacterium zatmanii 29429 509 2 Microvirga 929 186650 21 0 1 genus 0 species Microvirga ossetica 1 1882682 908 genus 0 227 1 Methylobacterium 9 407 5641 species 0 Methylobacterium radiotolerans 1 31998 647 822 270351 Methylobacterium aquaticum 1 0 species species 0 Methylobacterium oryzae 1 625 334852 418223 597 Methylobacterium phyllosphaerae 1 species 0 Methylobacterium nodulans 1 114616 689 0 species 0 no rank 2615210 2034 3 Methylobacterium sp. 4-46 1 426117 752 0 species 0 species 925818 717 1 Methylobacterium sp. AMS5 species 0 Methylobacterium sp. C1 1 565 1479019 52 Rhizobiaceae 35193 82115 406 0 1 family genus 1 0 7 Shinella 2 323620 900 893 2643062 1 no rank 0 Shinella sp. HZN7 1 879274 893 0 species 0 6 1 genus Liberibacter 6 34019 1228 species 0 1273132 218 Liberibacter crescens 1 309868 299 1 Candidatus Liberibacter americanus species 0 556287 309 1 Candidatus Liberibacter solanacearum 0 species 1 Candidatus Liberibacter asiaticus 34021 186 species 0 1 Candidatus Liberibacter africanus 34020 210 0 species 25391 227290 33 no rank 0 genus 0 1218 1 24 Rhizobium 18066 379 Rhizobium tropici 1 398 1043 0 species species 0 2207 29449 1 Rhizobium etli 0 no rank 2613769 7568 18 2028343 953 Rhizobium sp. 10195 1 species 0 1 Rhizobium sp. Y9 667 1914541 0 species species 0 1 Rhizobium sp. ACO-34A 1571470 840 0 species 1 Rhizobium sp. IE4771 1301032 459 1 Rhizobium sp. NXC14 438 1981173 species 0 0 species 2048897 658 1 Rhizobium sp. NXC24 Rhizobium sp. IRBG74 1 424182 660 0 species 2020312 513 1 Rhizobium sp. CIAT894 0 species 539 1869170 Rhizobium sp. S41 1 species 0 species 0 Rhizobium sp. NT-26 1 1125847 414 1 Rhizobium sp. N324 1703969 595 0 species 1 Rhizobium sp. N1314 1703961 105 0 species 1 Rhizobium sp. N113 1703960 7 0 species 1 Rhizobium sp. N731 105 1703966 0 species 1 1703968 Rhizobium sp. N871 1 species 0 species 0 1 Rhizobium sp. N1341 1703962 7 0 species 96 2020313 Rhizobium sp. TAL182 1 1 Rhizobium sp. Kim5 2020311 511 0 species Rhizobium leguminosarum 1 4075 384 species 0 0 species 1 Rhizobium gallicum 1024 56730 species 0 1 Rhizobium phaseoli 396 931 1 5 0 genus 1175 1525371 Neorhizobium 2 species 0 1170 399 Neorhizobium galegae 1 357 6150 7 Agrobacterium 1 114 0 genus 0 no rank 2 1165 2632611 Agrobacterium sp. RAC06 1 1842536 523 species 0 species 0 861208 642 Agrobacterium sp. H13-3 1 2 1183400 3256 0 species group 0 species 1176649 723 1 Agrobacterium fabrum 0 species 358 2533 1 Agrobacterium tumefaciens 1 Agrobacterium vitis 878 373 species 0 species 0 359 737 Agrobacterium rhizogenes 1 227292 7268 10 0 no rank 3 Ensifer 106591 1423 1 0 11 genus 750 716925 1 Ensifer sojae 0 species 662 106592 1 Ensifer adhaerens 0 species 97 0 1 genus 7 Sinorhizobium 5845 28105 species 0 1 Sinorhizobium medicae 110321 553 1 663276 1712 0 species group 1712 380 Sinorhizobium fredii 1 0 species 382 1637 1 Sinorhizobium meliloti 0 species 1 Sinorhizobium americanum 194963 795 species 0 2613772 1051 2 0 no rank 794846 407 Sinorhizobium sp. CCBAU 05631 1 species 0 0 species 1842534 644 Sinorhizobium sp. RAC02 1 family 0 20 1 Xanthobacteraceae 7 2766 335928 genus 0 8 1 152053 557 Starkeya 2 species 0 1 Starkeya novella 921 549 279 1013 2 Xanthobacter 1 0 10 genus 280 1003 1 Xanthobacter autotrophicus species 0 0 16 1 genus 1176 6 2 Azorhizobium 7 1160 Azorhizobium caulinodans 1 0 species Aurantimonadaceae 7 255475 3923 0 32 1 family 1 0 5 genus 533 414371 Aureimonas 2 no rank 0 2615206 528 1 528 1349819 Aureimonas sp. AU20 1 0 species genus 1 84 0 4 Martelella 293088 3358 species 0 1486262 725 Martelella endophytica 1 293089 1201 Martelella mediterranea 1 0 species no rank 0 1 1348 2629616 1 Martelella sp. AD-3 1348 686597 species 0 45404 718 4 Beijerinckiaceae family 1 0 4 genus 0 326 120652 1 Methylocella silvestris 1 199596 326 species 0 532 388 2 Beijerinckia 1 5 0 genus species 0 383 533 Beijerinckia indica 1 0 family 119043 444 2 2 Parvibaculum 256616 444 genus 1 2 0 256618 442 Parvibaculum lavamentivorans 1 species 0 18 Bartonellaceae 4776 772 family 0 10 1 773 4766 Bartonella 17 genus 101 0 1 0 species 1 Bartonella ancashensis 1318743 258 1686310 1080 1 Bartonella apis species 0 6 2645622 1245 no rank 0 species 0 Bartonella sp. 1-1C 1 130 515256 0 species Bartonella sp. A1379B 1 1933910 116 Bartonella sp. JB15 1 1933906 241 0 species 116 1933912 Bartonella sp. Raccoon60 1 species 0 species 0 1 Bartonella sp. WD16.2 401 1933904 Bartonella sp. JB63 1 241 1933907 0 species species 0 1 Bartonella bacilliformis 774 217 56426 235 1 Bartonella clarridgeiae 0 species species 0 Bartonella quintana 1 803 194 388640 276 1 Bartonella australis 0 species 0 species 354 33045 1 Bartonella grahamii 33047 236 1 Bartonella vinsonii 0 species Bartonella henselae 1 38323 231 0 species 1 Bartonella tribocorum 85701 339 0 species family 2 0 1 31993 1268 6 Methylocystaceae genus 1 18 0 624 425 Methylosinus 2 species 0 Methylosinus trichosporium 1 606 426 3 Methylocystis 133 642 genus 1 27 0 0 species 1 Methylocystis bryophila 655015 345 1 2625913 270 0 no rank species 0 270 187303 Methylocystis sp. SC2 1 Phyllobacteriaceae 20 69277 9380 family 0 76 1 464 245876 2 Nitratireductor genus 1 5 0 472175 459 Nitratireductor basaltis 1 0 species Chelativorans 2 680 449972 0 4 1 genus 676 2643807 1 0 no rank 0 species 1 Chelativorans sp. BNC1 266779 676 0 249 1 genus Mesorhizobium 9 6101 68287 1 745 325217 0 no rank 0 species 278153 745 1 Mesorhizobium sp. WSM1497 species 0 536018 535 Mesorhizobium australicum 1 2066070 724 Mesorhizobium japonicum 1 0 species species 0 39645 1037 1 Mesorhizobium ciceri 71433 629 1 Mesorhizobium amorphae species 0 1 Mesorhizobium opportunistum 593909 820 0 species species 0 Mesorhizobium loti 1 381 911 Mesorhizobium sp. B7 1 1670800 451 0 species 31988 744 Aminobacter 2 13 0 1 genus species 0 Aminobacter aminovorans 1 83263 731 genus 6 0 1 Phyllobacterium 2 702 28100 0 species 696 1867719 1 Phyllobacterium zundukense 274591 613 2 Hoeflea 1 5 0 genus 2614931 608 1 no rank 0 Hoeflea sp. IMCC20628 1 608 1620421 0 species 41294 15568 Bradyrhizobiaceae 26 family 1 0 177 2 Variibacter 306 1649510 0 3 1 genus species 0 1 Variibacter gotjawalensis 303 1333996 Oligotropha 2 40136 354 1 2 0 genus species 0 Oligotropha carboxidovorans 1 40137 352 0 38 1 genus 5 Bosea 85413 2272 species 0 Bosea vaviloviae 1 569 1526658 2653178 1665 3 0 no rank species 0 Bosea sp. AS-1 1 507 2015316 0 species Bosea sp. RAC05 1 1842539 475 1792307 683 Bosea sp. PAMC 26642 1 species 0 863 911 3 Nitrobacter genus 1 5 0 species 0 420 913 Nitrobacter winogradskyi 1 Nitrobacter hamburgensis 1 438 912 species 0 genus 0 229 1 Bradyrhizobium 11 374 7897 species 0 Bradyrhizobium icense 1 554 1274631 Bradyrhizobium japonicum 1 375 1106 species 0 6 2631580 4022 0 no rank species 0 Bradyrhizobium sp. ORS 285 1 115808 604 1 Bradyrhizobium sp. SK17 825 2057741 0 species 0 species 1 Bradyrhizobium sp. ORS 278 114615 687 species 0 703 288000 Bradyrhizobium sp. BTAi1 1 0 species 594 1223566 Bradyrhizobium sp. CCGE-LA001 1 Bradyrhizobium sp. 1 609 376 species 0 species 0 872 44255 1 Bradyrhizobium oligotrophicum 0 species 1 Bradyrhizobium diazoefficiens 1355477 1114 3699 1073 2 Rhodopseudomonas 1 0 71 genus species 0 1 Rhodopseudomonas palustris 1076 3628 1 0 25 family Brucellaceae 20 5673 118882 genus 54 0 1 5 Ochrobactrum 3637 528 species 0 824 271865 1 Ochrobactrum sp. A44 419475 926 Ochrobactrum pseudogrignonense 1 species 0 Ochrobactrum pituitosum 1 571256 934 0 species 1 Ochrobactrum anthropi 529 899 species 0 234 2011 Brucella 14 951 0 1 genus Brucella vulpis 1 981386 132 species 0 1 Brucella microti 34 444163 species 0 Brucella abortus 1 70 235 0 species 29459 54 1 Brucella melitensis 0 species 4 2632610 416 no rank 0 species 0 Brucella sp. 141012304 1 142 1885919 1844051 110 1 Brucella sp. 09RB8910 0 species 1 Brucella sp. 09RB8471 114 1149952 species 0 0 species 50 1891098 Brucella sp. 2002734562 1 species 0 Brucella ceti 1 120577 102 120576 99 Brucella pinnipedialis 1 0 species 40 29461 Brucella suis 1 species 0 0 species 27 236 1 Brucella ovis 0 species Brucella canis 1 86 36855 no rank 0 119042 1723 6 1572860 684 2 Hartmannibacter 1 25 0 genus 0 species 1482074 659 Hartmannibacter diazotrophicus 1 442 1484898 Methyloceanibacter 2 genus 9 0 1 species 0 1384459 433 Methyloceanibacter caenitepidi 1 Pseudorhodoplanes 2 597 1734920 0 19 1 genus 1 Pseudorhodoplanes sinuspersici 578 1235591 species 0 4 Chelatococcaceae 2036754 1194 family 3 0 1 1191 28209 3 Chelatococcus genus 0 20 1 0 species 454 444444 Chelatococcus daeguensis 1 2638111 717 1 0 no rank 0 species Chelatococcus sp. CO-6 1 717 1702325 Rickettsiales 51 7835 766 order 1 0 32 no rank 0 1 449 1699067 1528098 449 Rickettsiales bacterium Ac37b 1 species 0 0 16 1 family 2 Candidatus Midichloriaceae 1328881 310 0 genus 411566 294 1 234827 294 1 Candidatus Midichloria mitochondrii 0 species 25 775 3946 0 family 24 3803 33988 0 tribe Rickettsia 23 3385 780 1 415 0 genus 383 114295 1 0 no rank Rickettsia endosymbiont of Bemisia tabaci 1 383 337479 0 species 2 589 114292 0 species group 0 species 782 288 Rickettsia prowazekii 1 1 Rickettsia typhi 785 301 0 species 0 species group 628 1129742 2 788 256 Rickettsia canadensis 1 species 0 0 species 372 33990 1 Rickettsia bellii species group 0 114277 1370 17 0 species 1 Rickettsia heilongjiangensis 226665 7 1 Rickettsia akari 177 786 species 0 species 0 781 16 Rickettsia conorii 1 Rickettsia montanensis 1 52 33991 0 species 216 42862 Rickettsia felis 1 0 species 84 783 Rickettsia rickettsii 1 0 species species 0 Rickettsia rhipicephali 1 41 33992 128 109232 1 Rickettsia monacensis species 0 47589 88 Rickettsia peacockii 1 species 0 0 species 1 Rickettsia massiliae 35791 24 0 species 179 33989 1 Rickettsia amblyommatis 35790 20 Rickettsia japonica 1 species 0 35794 25 Rickettsia slovaca 1 species 0 1105106 17 1 Rickettsia philipii species 0 0 species 1 Rickettsia parkeri 35792 101 1 Rickettsia africae 35788 11 species 0 0 species 184 787 Rickettsia australis 1 0 genus 1 418 69474 0 species 784 418 1 Orientia tsutsugamushi genus 0 2115980 143 1 2115978 143 Candidatus Phycorickettsia trachydisci 1 0 species family 0 3 1 Anaplasmataceae 22 3098 942 227 768 Anaplasma 4 genus 0 1 1 species 0 769 40 1 Anaplasma centrale 0 species group 1 106179 131 131 948 Anaplasma phagocytophilum 1 species 0 species 0 Anaplasma marginale 1 770 55 1 6 0 genus 943 1315 Ehrlichia 6 species group 0 1074 106178 4 Ehrlichia chaffeensis 1 945 222 species 0 species 0 1 Ehrlichia ruminantium 779 315 Ehrlichia canis 1 291 944 species 0 species 0 35795 246 1 Ehrlichia muris 1 106181 235 no rank 0 species 0 235 391036 Ehrlichia sp. HF 1 0 tribe 1287 952 8 953 1287 8 Wolbachia genus 1 0 7 0 no rank 2640676 1280 7 0 species 80849 97 Wolbachia endosymbiont of Brugia malayi 1 66084 229 Wolbachia sp. wRi 1 0 species 0 species 163164 198 1 Wolbachia endosymbiont of Drosophila melanogaster Wolbachia endosymbiont of Cimex lectularius 1 184 246273 0 species 400 77038 1 Wolbachia endosymbiont of Drosophila simulans 0 species 0 species 77551 92 1 Wolbachia endosymbiont of Onchocerca volvulus 1 Wolbachia endosymbiont of Onchocerca ochengi 100901 80 species 0 33993 266 3 genus 0 species 0 951 100 Neorickettsia sennetsu 1 33994 103 1 Neorickettsia helminthoeca 0 species 63 950 1 Neorickettsia risticii species 0 82117 2826 8 no rank 0 1632780 588 2 Phreatobacter genus 1 11 0 577 1868589 1 Phreatobacter sp. S-12 species 0 0 clade 2 62654 778 Candidatus Puniceispirillum 2 778 767891 genus 5 0 1 species 0 767892 773 Candidatus Puniceispirillum marinum 1 1 51 0 genus Polymorphum 2 991903 571 520 991904 Polymorphum gilvum 1 species 0 5 0 1 genus 889 213485 2 Micavibrio 0 species 1 Micavibrio aeruginosavorus 349221 884 order 0 1 1 3 Parvularculales 255473 163 7 0 1 family Parvularculaceae 2 162 255474 genus 0 155 208215 1 0 species 208216 155 1 Parvularcula bermudensis 82 Sphingomonadales 204457 34072 1 224 0 order 7128 335929 22 Erythrobacteraceae family 113 0 1 genus 1 63 0 4 Altererythrobacter 361177 1501 0 species 1 Altererythrobacter ishigakiensis 476157 302 species 0 1267766 617 Altererythrobacter atlanticus 1 519 361183 1 Altererythrobacter epoxidivorans 0 species 2800682 496 1 0 genus Altererythrobacter namhicola 1 496 645517 species 0 0 no rank 1739 2800788 6 1073 1041 Erythrobacter 3 genus 1 0 26 1112 339 1 Porphyrobacter neustonensis species 0 708 39960 1 Erythrobacter litoralis species 0 3 Porphyrobacter 1111 666 genus 1 0 22 no rank 0 2683265 644 2 1 Porphyrobacter HT-58-2 2023229 350 species 0 0 species Porphyrobacter sp. LM 6 1 1896196 294 genus 0 2 629 2800681 0 species 1 Erythrobacter atlanticus 1648404 261 species 0 1 Erythrobacter gangjinensis 502682 368 0 genus 2 2800686 635 species 0 Altererythrobacter mangrovi 1 1982042 300 692370 335 Altererythrobacter dongtanensis 1 0 species 402 2800685 1 genus 0 species 0 Altererythrobacter marensis 1 543877 402 Croceicoccus 3 925 1295327 1 14 0 genus 450378 569 Croceicoccus marinus 1 0 species 1 Croceicoccus naphthovorans 342 1348774 0 species genus 0 1855416 688 2 Erythrobacter flavus 1 192812 278 0 species species 0 266951 410 Erythrobacter seohaensis 1 Sphingomonadaceae 59 41297 26720 family 419 0 1 0 genus 1 306 2709685 266812 306 Sphingorhabdus flavimaris 1 0 species genus 0 50 1 Novosphingobium 5 2215 165696 2644732 636 1 no rank 0 species 0 702113 636 1 Novosphingobium sp. PP1Y 507 158500 Novosphingobium resinovorum 1 0 species 48935 451 Novosphingobium aromaticivorans 1 species 0 species 0 205844 571 1 Novosphingobium pentaromativorans genus 145 0 1 15 Sphingobium 7501 165695 species 0 46429 675 1 Sphingobium chlorophenolicum 2611147 2876 6 no rank 0 1 Sphingobium sp. YBL2 484429 626 0 species Sphingobium sp. MI1205 1 407020 434 0 species 1 Sphingobium sp. TKS 636 1315974 species 0 1843368 445 Sphingobium sp. RAC03 1 species 0 Sphingobium sp. SYK-6 1 627192 358 0 species 1 Sphingobium sp. EP60837 1855519 377 0 species Sphingobium yanoikuyae 1 13690 584 species 0 Sphingobium japonicum 1 332056 522 0 species 0 species 1673076 656 Sphingobium hydrophobicum 1 1 Sphingobium indicum 332055 438 species 0 1 Sphingobium herbicidovorans 411 76947 species 0 0 species 670 1332080 Sphingobium baderi 1 120107 524 Sphingobium cloacae 1 species 0 0 genus 1 760 2685927 Sphingomonas sp. JJ-A5 1 1921510 760 species 0 genus 1 0 47 10 Sphingopyxis 165697 3715 0 species 221 33052 Sphingopyxis terrae 1 0 species 1 Sphingopyxis granuli 267128 388 species 0 359 117207 1 Sphingopyxis alaskensis 0 species 33050 709 Sphingopyxis macrogoltabida 1 4 1595 2614943 0 no rank 306 292913 1 Sphingopyxis sp. 113P3 species 0 0 species Sphingopyxis sp. MG 1 370 1866325 1 Sphingopyxis sp. LPB0140 484 1913578 0 species 435 1357916 Sphingopyxis sp. QXT-31 1 species 0 1 Sphingopyxis fribergensis 396 1515612 species 0 Blastomonas 2 150203 579 genus 1 9 0 0 no rank 2626550 570 1 0 species Blastomonas sp. RAC04 1 570 1842535 13687 8114 15 Sphingomonas 0 170 1 genus 1 Sphingomonas sanxanigenens 960 397260 species 0 0 no rank 3204 196159 6 0 species 544 1938607 1 Sphingomonas sp. LM7 0 species Sphingomonas sp. NIC1 1 412 1961362 0 species Sphingomonas sp. LK11 1 659 1390395 0 species 1 Sphingomonas sp. Cra20 447 1327635 1030157 536 1 Sphingomonas sp. KC8 0 species 606 745310 Sphingomonas sp. MM-1 1 0 species species 0 1 Sphingomonas hengshuiensis 452 1609977 0 species 152682 493 Sphingomonas melonis 1 Sphingomonas taxi 1 529 1549858 0 species 1560345 448 Sphingomonas panacis 1 species 0 1 Sphingomonas koreensis 93064 511 0 species Sphingomonas wittichii 2 160791 1347 species 687 0 1 strain 0 Sphingomonas sp. DC-6 1 660 1283312 1 4 0 genus 2 Rhizorhabdus 556 1649486 0 species Rhizorhabdus dicambivorans 1 1850238 552 1434046 981 3 Sphingorhabdus genus 1 0 10 no rank 0 2614947 971 2 0 species 529 1806885 Sphingorhabdus sp. M41 1 2077182 442 1 Sphingorhabdus sp. YGSMI21 species 0 72173 390 Citromicrobium 2 1 0 2 genus 388 2630544 1 no rank 0 1634516 388 1 Citromicrobium sp. JL477 0 species genus 5 0 1 Zymomonas 2 1184 541 542 1179 1 Zymomonas mobilis 0 species 3 583 1191478 0 order family 0 1 1 1191479 583 Magnetococcaceae 3 genus 1 0 1 Magnetococcus 2 162171 582 species 0 1124597 581 1 Magnetococcus marinus phylum 0 68297 1779 2 class 0 1779 203486 2 2 1779 203487 order 0 family 0 2 203488 1779 genus 0 2 13 1779 species 0 1 Dictyoglomus turgidum 513050 904 species 0 Dictyoglomus thermophilum 1 14 875 1 508 2138240 0 phylum class 0 2138243 508 1 order 0 1 2138246 508 family 0 1 2138247 508 genus 0 1 508 68335 35786 508 1 Coprothermobacter proteolyticus 0 species phylum 0 4679 508458 8 Synergistia 8 649775 4679 22 0 1 class 1 0 16 order Synergistales 7 649776 4657 1 0 598 family Synergistaceae 6 649777 4641 1 81461 332 0 genus 81462 332 Thermanaerovibrio acidaminovorans 1 species 0 259 336260 1 genus 0 1 Thermovirga lienii 259 336261 species 0 0 genus 1 276 49894 species 0 276 97477 1 Acetomicrobium mobile 1 2598 508459 genus 0 species 0 1197717 2598 1 Cloacibacillus porcorum 1 81466 578 0 genus 0 species 81468 578 Aminobacterium colombiense 1 13 3951 40117 0 phylum 203693 3951 13 Nitrospira 0 15 1 class 1 0 22 order 189778 3936 Nitrospirales 12 0 3 1 family Nitrospiraceae 11 189779 3914 Nitrospira 5 1749 1234 0 6 1 genus species 0 1 Nitrospira japonica 438 1325564 Candidatus Nitrospira inopinata 1 411 1715989 0 species 504 42253 Nitrospira moscoviensis 1 0 species species 0 Nitrospira defluvii 1 330214 390 1 874 28261 0 genus species 0 874 28262 Thermodesulfovibrio yellowstonii 1 179 1288 Leptospirillum 4 1 1 0 genus species group 0 572 261386 1 species 0 Leptospirillum ferriphilum 1 178606 572 655606 278 1 0 species group 0 species 180 278 1 Leptospirillum ferrooxidans 0 species group 1 261385 437 species 0 Leptospirillum sp. Group II 'CF-1' 1 1660083 437