members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 22602393 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 28916 4691 0 name 1 0 49459 superkingdom 264 2157 0 46322 phylum 4 Euryarchaeota 28890 216 0 1 0 21 2283796 clade 2840 1 0 183967 19 Thermoplasmata 3 class 2663 1235850 6 1 0 835 2 order Methanomassiliicoccales 332 family 3 Methanomassiliicoccaceae 3 1577788 0 1 0 1 1607807 112 genus species Candidatus Methanoplasma termitum 112 1577791 1 0 217 genus 0 1080709 1 Candidatus Methanomassiliicoccus intestinalis species 217 0 1 1406512 family 501 2 2517203 0 0 1 1291539 2 501 Candidatus Methanomethylophilus genus 2 0 1 1291540 Candidatus Methanomethylophilus alvus species 499 668 no rank 1234666 1 0 1495144 1 0 668 species methanogenic archaeon ISO4-H5 1157 Thermoplasmatales 2 order 1 0 2301 11 3 90142 0 166 family Ferroplasma 1 genus 166 1 0 74968 3 species Ferroplasma acidiphilum 78 74969 1 0 0 97393 1 Ferroplasma acidarmanus species 87 86 family 1 46630 0 1 46631 0 genus 86 0 82076 1 Picrophilus torridus species 86 224 family 0 2 46659 0 2 2302 224 genus 113 Thermoplasma volcanium species 0 50339 1 0 2303 1 Thermoplasma acidophilum species 111 603 no rank 1 1919231 0 1 1054217 0 603 species Thermoplasmatales archaeon BRNA1 0 1 1747776 3 76 Cuniculiplasmataceae family 2 74 Cuniculiplasma genus 5 0 1 2 1747777 69 species Cuniculiplasma divulgatum 1673428 1 0 1803510 2 0 177 clade 177 genus 0 379546 2 0 1 2633939 72 no rank 72 Aciduliprofundum sp. MAR08-339 species 0 1 673860 0 1 379547 105 Aciduliprofundum boonei species 2290931 111 0 clade 32242 1 0 65 183963 20185 Halobacteria 82 class 20 1644060 1 0 90 order Natrialbales 5803 5713 Natrialbaceae 62 family 1 0 19 1644061 1 0 2 29287 541 Natronococcus 1 genus 0 29288 1 Natronococcus occultus species 540 403 3 genus Natrialba 63742 2 1 0 400 species Natrialba magadii 1 13769 0 7 genus Halopiger 944 2 387342 1 0 0 1 387343 937 Halopiger xanaduensis species Halostagnicola genus 1 650 0 1 353799 2 649 species Halostagnicola larsenii 1 353800 0 554 genus 0 203193 1 0 1 229731 554 Halobiforma lacisalsi species 0 1269201 1 528 genus no rank 528 0 2621923 1 1333523 1 0 528 species Salinarchaeum sp. Harcht-Bsk1 866 genus 8 Haloterrigena 3 121871 0 1 588898 1 0 species Haloterrigena daqingensis 328 530 species Haloterrigena turkmenica 62320 1 0 1 genus Natronobacterium 210 2256 2 1 0 species Natronobacterium gregoryi 209 1 44930 0 955 2 genus Natrinema 88723 3 1 0 0 2622230 1 513 no rank 0 406552 1 Natrinema sp. J7-2 species 513 0 1 69525 440 Natrinema pellirubrum species 17 1644055 0 1 5207 order 79 Haloferacales 8 1644056 1 0 4 family Haloferacaceae 2961 0 1 2 60846 Halogeometricum genus 2 292 Halogeometricum borinquense species 290 0 60847 1 1 293431 0 165 genus 165 Haloquadratum walsbyi species 0 1 293091 0 1 4 2251 2500 Haloferax genus 22 1 2246 0 species Haloferax volcanii 811 35746 1 0 890 species Haloferax gibbonsii 777 Haloferax mediterranei species 0 1 2252 1963271 7 1 0 1797 21 family Halorubraceae genus 411 1644057 1 0 411 Salinigranum rubrum species 0 1 755307 914 genus 13 Halorubrum 3 56688 0 1 Halorubrum trapanicum species 508 0 1 29284 393 species Halorubrum lacusprofundi 2247 1 0 451 Halopenitus genus 5 0 1 1209988 2 Halopenitus persicus species 446 0 1 1048396 370 no rank 2678336 1 0 1 756883 0 species halophilic archaeon DL31 370 Halobacteriales 92 order 9093 1 0 2235 27 10 2236 0 1 family 15 Halobacteriaceae 3144 2239 4 1 0 1917 16 genus Halobacterium species Halobacterium salinarum 403 1 2242 0 0 2668073 1 930 no rank Halobacterium sp. DL1 species 930 0 1 751944 species Halobacterium hubeiense 568 1 1407499 0 Halodesulfurarchaeum genus 2 457 0 1 2 1980514 1 1873524 0 species Halodesulfurarchaeum formicicum 455 0 1 1656823 2 Halanaeroarchaeum genus 1 201 Halanaeroarchaeum sulfurireducens species 200 0 1604004 1 1 332246 0 554 genus 413810 1 0 species Halalkalicoccus jeotgali 554 1 0 1963268 16 5857 Haloarculaceae 148 family 2452 genus 131 Haloarcula 2237 5 0 1 no rank 580 2624677 1 0 1592728 1 0 species Haloarcula sp. CBA1115 580 species Haloarcula hispanica 578 51589 1 0 Haloarcula taiwanensis species 416 0 1 1932004 0 2238 1 747 Haloarcula marismortui species 795 Halorientalis 34 genus 1 0 2 1073987 0 2648975 1 761 no rank Halorientalis sp. IM1011 species 761 0 1 1932360 0 1 3 146825 1063 Halorhabdus genus 5 Halorhabdus tiamatea species 385 0 1 430914 673 species Halorhabdus utahensis 1 146826 0 0 1 63743 3 732 Natronomonas genus 1 363 species Natronomonas moolapensis 416273 1 0 368 Natronomonas pharaonis species 0 1 2257 0 1 2 203135 Halomicrobium genus 2 667 0 57705 1 Halomicrobium mukohataei species 665 Methanomicrobia 25 class 12057 1 0 224756 46 94695 28 0 1 order 23 Methanosarcinales 6929 0 1 2206 24 6036 Methanosarcinaceae family 6 2 2321 1 0 189 2 genus Methanohalobium 0 2322 1 187 Methanohalobium evestigatum species 2220 1 0 genus 195 420950 1 0 species Methanolobus psychrophilus 195 3 genus Methanohalophilus 377 3 2175 1 0 152 species Methanohalophilus halophilus 1 2177 0 0 1 2176 222 Methanohalophilus mahii species 0 196136 1 genus 178 0 39669 1 178 Methanosalsum zhilinae species genus 247 1 101191 0 247 species Methanomethylovorans hollandica 101192 1 0 4515 Methanosarcina genus 22 0 1 2207 13 0 2215 1 Methanosarcina vacuolata species 236 2214 1 0 551 species Methanosarcina acetivorans 0 1 2208 Methanosarcina barkeri species 900 467 Methanosarcina mazei species 0 2209 1 species Methanosarcina horonobensis 385 418008 1 0 204 Methanosarcina thermophila species 0 2210 1 0 4 2644672 1133 no rank Methanosarcina sp. WH1 species 252 0 1 1434102 0 1434099 1 299 Methanosarcina sp. Kolksee species 1 1434100 0 335 species Methanosarcina sp. MTP4 0 1434103 1 247 Methanosarcina sp. WWM596 species 451 species Methanosarcina siciliae 38027 1 0 Methanosarcina lacustris species 166 0 1 170861 2 2225 0 329 genus 29291 1 0 species Methanococcoides burtonii 172 Methanococcoides methylutens species 157 0 1 2226 870 family 1 Methanosaetaceae 3 143067 0 1 2222 2 0 869 genus 2223 1 0 347 species Methanothrix soehngenii 301375 1 0 species Methanosaeta harundinacea 522 2191 14 1 0 4311 16 order Methanomicrobiales 1 196137 0 family 287 2202 1 0 genus 287 Methanospirillum hungatei species 287 0 1 2203 1077 family 0 4 1198451 2 475087 1 0 2 genus Methanosphaerula 294 species Methanosphaerula palustris 292 1 475088 0 783 genus 0 395331 2 0 882104 1 Methanoregula formicica species 522 261 species Methanoregula boonei 1 358766 0 0 1 2194 6 2320 Methanomicrobiaceae family 2 genus 175 230355 1 0 1 54120 0 species Methanolacinia petrolearia 175 45989 4 1 0 13 genus Methanoculleus 2143 634 no rank 0 2619537 1 86622 1 0 634 species Methanoculleus sp. MAB1 0 1 83986 654 Methanoculleus bourgensis species 1 2198 0 species Methanoculleus marisnigri 842 0 1 2 88404 611 Methanocorpusculaceae family 1 0 2192 1 610 genus 0 83984 1 610 Methanocorpusculum labreanum species 3 570264 0 792 order 570265 3 0 family 792 Methanocella genus 2 792 0 1 3 570266 0 1175444 1 163 Methanocella conradii species Methanocella arvoryzae species 627 0 1175445 1 0 183980 7 class 764 order 764 0 7 2231 0 2232 7 764 family 54260 1 0 genus 165 0 54261 1 Ferroglobus placidus species 165 0 190818 2 genus 229 113653 1 0 78 species Geoglobus ahangari 0 565033 1 151 Geoglobus acetivorans species 2233 4 0 370 genus 0 1 84156 Archaeoglobus profundus species 111 1 1316941 0 102 species Archaeoglobus sulfaticallidus 1 58290 0 82 species Archaeoglobus veneficus 2234 1 0 75 species Archaeoglobus fulgidus 183968 39 0 1 class 6 Thermococci 5027 5021 order 18 Thermococcales 38 2258 0 1 family 5003 37 2259 0 4427 genus 128 Thermococcus 29 2263 0 1 species Thermococcus siculi 130 72803 1 0 135 species Thermococcus profundus 1 49899 0 91 Thermococcus barossii species 0 1 54077 0 342948 1 Thermococcus onnurineus species 135 0 71998 1 Thermococcus pacificus species 63 0 2627626 6 no rank 1106 1 246969 0 380 species Thermococcus sp. AM4 0 2008440 1 161 Thermococcus sp. 5-4 species 1 1674923 0 58 species Thermococcus sp. 2319x1 1 2016361 0 91 species Thermococcus sp. EXT12c Thermococcus sp. 4557 species 332 0 1 1042877 species Thermococcus sp. P6 84 122420 1 0 0 195522 1 112 Thermococcus nautili species 87 Thermococcus litoralis species 0 1 2265 species Thermococcus peptonophilus 184 53952 1 0 Thermococcus chitonophagus species 72 0 1 54262 1 55802 0 119 species Thermococcus barophilus 130 species Thermococcus paralvinellae 582419 1 0 172049 1 0 species Thermococcus sibiricus 66 136 Thermococcus eurythermalis species 0 1 1505907 323 Thermococcus gammatolerans species 0 1 187878 0 277988 1 134 Thermococcus thioreducens species 1 110164 0 141 species Thermococcus guaymasensis 138 Thermococcus gorgonarius species 0 1 71997 159 Thermococcus kodakarensis species 0 1 311400 113 species Thermococcus piezophilus 1 1712654 0 1 187880 0 species Thermococcus radiotolerans 245 366 Thermococcus celer species 0 1 2264 114 Thermococcus cleftensis species 0 163003 1 83867 1 0 genus 81 0 1 971279 Palaeococcus pacificus species 81 495 genus 7 2260 0 48 Pyrococcus kukulkanii species 0 1 1609559 no rank 106 2 2629106 0 342949 1 0 species Pyrococcus sp. NA2 46 0 1183377 1 Pyrococcus sp. ST04 species 60 0 1 1008460 184 Pyrococcus yayanosii species 0 1 53953 Pyrococcus horikoshii species 72 Pyrococcus abyssi species 28 0 29292 1 0 2261 1 57 Pyrococcus furiosus species 5445 clade 0 37 2283794 Methanococci class 1 2025 0 1 13 183939 order 2024 12 2182 0 0 2183 5 1266 family 139 genus 0 155862 1 Methanothermococcus okinawensis species 139 0 1 155863 2184 4 0 genus 1127 0 2187 1 Methanococcus vannielii species 173 0 1 42879 Methanococcus aeolicus species 142 2188 1 0 species Methanococcus voltae 152 1 39152 0 species Methanococcus maripaludis 660 196117 7 0 family 758 581 genus 6 196118 0 0 67760 1 Methanocaldococcus infernus species 64 1 1301915 0 124 species Methanocaldococcus bathoardescens 83171 1 0 89 species Methanocaldococcus fervens no rank 102 0 1 2641196 102 Methanocaldococcus sp. FS406-22 species 0 644281 1 110 Methanocaldococcus jannaschii species 0 2190 1 92 Methanocaldococcus vulcanius species 0 1 73913 1 196119 0 177 genus 177 Methanotorris igneus species 0 1 2189 Methanobacteria class 5 3420 0 1 183925 24 23 2158 0 order 3415 67 family 1 2178 0 67 genus 0 1 2179 67 species Methanothermus fervidus 2180 1 0 0 1 22 2159 Methanobacteriaceae family 3 3348 genus 196 2316 1 0 species Methanosphaera stadtmanae 196 2317 1 0 Methanothermobacter 1 genus 344 1 0 145260 5 species Methanothermobacter marburgensis 122 145263 1 0 0 2631116 1 69 no rank 0 866790 1 69 Methanothermobacter sp. CaT2 species 145261 1 0 species Methanothermobacter wolfeii 81 0 1 145262 Methanothermobacter thermautotrophicus species 71 0 1 2172 7 1488 Methanobrevibacter genus 1 294671 1 0 species Methanobrevibacter olleyae 193 no rank 360 2 2638681 0 1609968 1 0 207 species Methanobrevibacter sp. YE315 0 1 224719 153 Methanobrevibacter sp. AbM4 species 0 1 230361 334 Methanobrevibacter millerae species 0 1 2173 338 Methanobrevibacter smithii species 0 83816 1 262 Methanobrevibacter ruminantium species 2160 8 0 1 1317 genus 2 Methanobacterium Methanobacterium subterraneum species 164 0 59277 1 129 species Methanobacterium formicicum 2162 1 0 2 2627676 0 464 no rank 1911685 1 0 337 species Methanobacterium sp. MZ-A1 1 1379702 0 127 species Methanobacterium sp. MB1 0 868131 1 187 Methanobacterium paludis species 118062 1 0 229 species Methanobacterium congolense 142 Methanobacterium lacus species 0 877455 1 3076 clade 47 1783275 0 0 28889 33 2355 phylum 0 183924 33 2355 class order 270 871006 2 0 family 123 871007 1 0 genus 123 0 105850 1 242703 1 0 123 species Acidilobus saccharovorans 255472 1 0 147 family 200414 1 0 147 genus 1 200415 0 147 species Caldisphaera lagunensis order 1 Desulfurococcales 502 114380 12 0 1 2272 8 0 349 family 22 genus 0 1 54253 1 54254 0 species Thermosphaera aggregans 22 54258 2 0 genus 69 0 54259 1 12 Ignicoccus islandicus species 0 1 160233 Ignicoccus hospitalis species 57 0 1 477695 genus 57 0 1 1200300 57 Thermogladius calderae species 108 genus 0 2273 2 94694 1 0 73 species Desulfurococcus amylolyticus 35 species Desulfurococcus mucosus 1 2275 0 0 2279 2 genus 93 species Staphylothermus hellenicus 15 84599 1 0 78 species Staphylothermus marinus 2280 1 0 0 3 2307 152 family genus 47 54247 1 0 47 Hyperthermus butylicus species 0 54248 1 91 genus 0 1 2308 Pyrodictium delaneyi species 91 0 1273541 1 genus 14 1 54251 0 0 1 54252 Pyrolobus fumarii species 14 0 8 2281 order 806 8 118883 0 family 806 67 genus 41980 2 0 Metallosphaera cuprina species 35 0 1006005 1 0 43687 1 Metallosphaera sedula species 32 199 genus 0 69655 1 0 1 111955 Sulfolobus tokodaii species 199 1 2100760 0 genus 88 0 2287 1 Sulfolobus solfataricus species 88 0 2284 3 genus 375 Sulfolobus acidocaldarius species 68 0 2285 1 no rank 137 1 2641160 0 0 1 1891280 137 Sulfolobus sp. A20 species Sulfolobus islandicus species 170 0 43080 1 77 genus 12914 1 0 1 563177 0 species Acidianus hospitalis 77 11 2266 1 0 777 7 order Thermoproteales family 336 0 114378 4 2268 4 0 genus 336 86 Thermofilum carboxyditrophus species 0 1483572 1 100 species Thermofilum uzonense 1 1550241 0 2269 1 0 species Thermofilum pendens 72 Thermofilum adornatus species 78 0 1 1365176 434 family 0 2267 6 2270 2 0 235 genus Thermoproteus uzoniensis species 187 0 1 184117 Thermoproteus tenax species 48 0 2271 1 37 genus 1 2276 0 0 2277 1 37 Pyrobaculum islandicum species genus 43 0 1 76886 species Caldivirga maquilingensis 43 1 76887 0 0 2 164450 119 genus 0 164451 1 43 Vulcanisaeta distributa species 985052 1 0 76 species Vulcanisaeta moutnovskia 651137 13 0 687 phylum 1643678 6 0 1 193 class 2 Nitrososphaeria 1968909 1 0 order 38 family 38 0 1968910 1 38 genus 0 498374 1 0 2045011 1 Candidatus Nitrosocaldus islandicus species 38 153 order 1 Nitrososphaerales 1033996 4 0 1 3 1033997 0 1 152 family 1 Nitrososphaeraceae 151 genus 1 Nitrososphaera 497726 2 0 1 1 1034015 0 150 species Nitrososphaera viennensis 31932 4 0 298 order 338190 4 0 1 298 family 2 Nitrosopumilaceae 0 1993653 1 109 genus 109 Candidatus Nitrosomarinus catalina species 0 1 1898749 genus 187 0 338191 2 species Candidatus Nitrosopumilus adriaticus 107 1 1580092 0 species Candidatus Nitrosopumilus sediminis 80 1229909 1 0 0 3 651142 196 no rank 0 2 1825023 141 genus 1846278 1 0 species Candidatus Nitrosotenuis sp. AQ6f 78 1603555 1 0 species Candidatus Nitrosotenuis cloacae 63 1593364 1 0 55 genus 55 Candidatus Nitrosopelagicus brevis species 0 1 1410606 phylum 34 0 1 51967 498845 1 0 genus 34 species Candidatus Korarchaeum cryptofilum 34 498846 1 0 61 clade 0 1 1783276 1801631 1 0 61 phylum genus 61 2490204 1 0 61 species Candidatus Micrarchaeota archaeon Mia14 1920749 1 0 4395 2 0 1 22524018 superkingdom 77 Bacteria clade 42726 91 1783257 0 203682 36 0 phylum 17769 7 666505 1 0 22 class Phycisphaerae 2857 0 1 4 666506 Phycisphaerales order 44 1774 666507 3 1 0 1730 22 family Phycisphaeraceae 1 0 2 666508 1708 Phycisphaera 74 genus 1634 Phycisphaera mikurensis species 0 1 547188 0 2483366 2 order 1061 1061 family 2 2483367 0 genus 1061 2 2483368 0 1 1940790 0 species Phycisphaerae bacterium L21-RPul-D3 401 1 1941349 0 660 species Phycisphaerae bacterium ST-PulAB-D4 429 class 3 2517206 0 1127829 3 0 1 429 order 27 Candidatus Brocadiales 402 family 0 1127830 2 402 Candidatus Kuenenia 2 genus 1 0 2 380738 0 1 174633 Candidatus Kuenenia stuttgartiensis species 400 26 203683 0 1 class 100 Planctomycetia 14483 0 2691355 3 697 order 3 1914233 0 1 family 5 Gemmataceae 697 1 0 2 113 Gemmata 2 genus 692 690 no rank 0 2622970 1 1630693 1 0 species Gemmata sp. SH-PL17 690 0 1 10 112 8773 Planctomycetales order 337 1 0 9 126 8436 Planctomycetaceae 51 family 541 genus 1 1649480 0 541 Planctopirus limnophila species 0 120 1 Fuerstia genus 64 888 0 1 2 1936111 1891926 1 0 824 species Fuerstia marisgermanicae 0 1 3 118 Planctomyces genus 61 6523 0 2 2648843 no rank 6462 5389 species Planctomyces sp. SH-PL62 1 1636152 0 Planctomyces sp. SH-PL14 species 1073 0 1 1632864 433 Rubinisphaera genus 5 0 1 1649490 2 1 119 0 species Rubinisphaera brasiliensis 428 0 2691354 5 order 1277 0 4 2691357 family 838 Rhodopirellula 1 genus 329 1 0 2 265488 0 265606 1 328 Rhodopirellula baltica species 0 1 2 123 509 Pirellula genus 3 506 Pirellula staleyi species 0 125 1 1 2691358 0 family 439 0 1 1676125 genus 439 Thermogutta terrifontis species 439 0 1 1331910 order 3636 7 2691356 0 0 1 1763524 7 Isosphaeraceae family 17 3636 1 0 2 1763521 1804 Paludisphaera 5 genus 1799 species Paludisphaera borealis 1387353 1 0 755 Isosphaera 6 genus 1 0 127 2 749 Isosphaera pallida species 0 128 1 genus 6 Singulisphaera 1060 2 466152 0 1 1054 Singulisphaera acidiphila species 0 1 466153 5 134625 0 1490 phylum 1490 Kiritimatiellae 1 class 1 0 1921781 5 order 6 Kiritimatiellales 1489 4 1921782 0 1 Kiritimatiellaceae 3 family 1483 1 0 1921783 3 2 1921784 1 0 1480 11 genus Kiritimatiella 1307763 1 0 species Kiritimatiella glycovorans 1469 phylum 8293 0 256845 3 Lentisphaeria class 29 8293 0 1 3 1313211 278082 2 0 1 8264 order 1514 Victivallales 1674876 1 0 6750 no rank 6750 Victivallales bacterium CCUG 44730 species 0 2094242 1 phylum 1560 0 22 204428 1560 Chlamydiia class 7 0 1 22 204429 1 0 1963360 8 628 Parachlamydiales 1 order 5 family Simkaniaceae 118 92712 2 1 0 0 1 34093 genus 113 113 Simkania negevensis species 0 83561 1 1 0 4 92713 Parachlamydiaceae 2 family 331 282132 2 1 0 4 genus Candidatus Protochlamydia 148 0 389348 1 Candidatus Protochlamydia naegleriophila species 144 genus 181 0 1 83551 1 83552 0 species Parachlamydia acanthamoebae 181 178 family 0 92714 1 71666 1 0 genus 178 178 species Waddlia chondrophila 71667 1 0 0 13 51291 925 order 925 Chlamydiaceae family 5 0 1 809 13 0 1113537 12 920 no rank 810 12 1 0 26 genus Chlamydia 920 46 Chlamydia trachomatis species 0 1 813 0 1 83556 45 Chlamydia felis species 124 species Chlamydia suis 83559 1 0 178 Chlamydia psittaci species 0 1 83554 Chlamydia muridarum species 80 0 1 83560 0 1457153 1 Chlamydia gallinacea species 63 Chlamydia avium species 80 0 1457141 1 species Chlamydia caviae 50 1 83557 0 0 1 85991 Chlamydia pecorum species 70 94 species Chlamydia pneumoniae 83558 1 0 species Chlamydia abortus 64 1 83555 0 Verrucomicrobia 41 phylum 13614 1 0 25 74201 6 203494 0 1 4392 class 13 Verrucomicrobiae 0 1 5 48461 Verrucomicrobiales order 34 4379 Akkermansiaceae 40 family 4345 1 0 4 1647988 21 genus Akkermansia 4305 239934 3 1 0 0 1 1679444 Akkermansia glycaniphila species 1714 Akkermansia muciniphila species 2570 0 239935 1 359 5 class Methylacidiphilae 5 1955630 1 0 717963 4 0 1 354 order 7 Methylacidiphilales 347 family 0 717964 3 0 1 3 511745 347 Methylacidiphilum genus 1 0 1 591154 Methylacidiphilum fumariolicum species 209 species Methylacidiphilum infernorum 137 1 511746 0 417295 2 0 no rank 1582 2026799 1 0 783 species Verrucomicrobia bacterium 0 1637999 1 Verrucomicrobia bacterium IMCC26134 species 799 134549 1 0 98 class 1 134550 0 98 genus 0 2648876 1 no rank 98 species Candidatus Xiphinematobacter sp. Idaho Grape 98 1 1704307 0 10 414999 0 1 class 51 Opitutae 7142 45 order Opitutales 6623 7 415000 1 0 Opitutaceae 72 family 6578 1 0 6 134623 2 178440 1 0 22 genus Opitutus 1433 1411 Opitutus terrae species 0 107709 1 0 1 278955 no rank 2708 794903 1 0 2708 species Opitutaceae bacterium TAV5 1 0 2 1961799 2365 Lacunisphaera 29 genus 2336 Lacunisphaera limnophila species 0 1 1838286 468 Puniceicoccales 12 order 1 0 2 415001 family 456 0 415002 1 genus 456 442430 1 0 Coraliomargarita akajimensis species 456 0 1 395922 0 2 2323 no rank 462 1783234 2 0 462 clade 1 95818 0 288 phylum 1 1895827 0 no rank 288 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 288 0 1 2056494 1 95901 0 174 clade 174 class 0 1 2497643 2497644 1 0 174 order family 174 0 2497645 1 genus 174 0 1551504 1 174 species Candidatus Babela massiliensis 673862 1 0 phylum 6560 508458 11 0 1 0 11 649775 6560 Synergistia 47 class 649776 10 0 1 6513 order 34 Synergistales 6479 Synergistaceae 253 family 1 0 649777 9 2 81461 1 0 37 genus Thermanaerovibrio 913 876 Thermanaerovibrio acidaminovorans species 0 1 81462 0 1 336260 204 genus 0 1 336261 204 Thermovirga lienii species 81466 1 0 genus 389 389 species Aminobacterium colombiense 1 81468 0 2 508459 0 1 4367 genus 13 Cloacibacillus 1197717 1 0 species Cloacibacillus porcorum 4354 Acetomicrobium 8 genus 353 1 0 49894 2 0 1 97477 Acetomicrobium mobile species 345 phylum 1303 74152 9 0 3 641853 0 288 class 35 order Elusimicrobiales 288 3 641854 1 0 2 641876 0 253 family 253 Elusimicrobium 8 genus 1 0 2 423604 1 423605 0 245 species Elusimicrobium minutum 447830 5 0 734 class 1 0 1783344 5 734 Endomicrobiales 1 order 1 0 4 1783343 733 Endomicrobiaceae 1 family 0 1 3 1408194 Endomicrobium genus 1 732 1 1408281 0 species Endomicrobium proavitum 448 species Candidatus Endomicrobium trichonymphae 283 1408204 1 0 281 no rank 0 99260 1 1 167965 0 species uncultured Termite group 1 bacterium 281 770 phylum 4 68297 0 770 class 4 203486 0 1 0 4 203487 Dictyoglomales 12 order 770 1 0 3 203488 Dictyoglomaceae 8 family 758 2 13 0 750 genus 0 1 14 Dictyoglomus thermophilum species 419 513050 1 0 species Dictyoglomus turgidum 331 32066 23 0 phylum 22943 23 203490 0 1 22943 class 31 Fusobacteriia 0 1 203491 22 Fusobacteriales order 24 22912 10 1129771 0 1 family 20 Leptotrichiaceae 7893 genus 1090 0 1 32068 1090 Sebaldella termitidis species 0 826 1 1 0 2 168808 Sneathia 3 genus 3115 3112 species Sneathia amnii 1 187101 0 Leptotrichia 12 genus 3109 1 0 32067 5 0 40542 1 631 Leptotrichia buccalis species 3 2633022 0 no rank 2466 species Leptotrichia sp. oral taxon 212 755 712357 1 0 Leptotrichia sp. oral taxon 498 species 722 0 712368 1 Leptotrichia sp. oral taxon 847 species 989 0 1 1785996 1 34104 0 559 genus 0 34105 1 559 Streptobacillus moniliformis species 14995 family 23 Fusobacteriaceae 11 203492 0 1 1 0 848 9 14216 Fusobacterium 90 genus 1228 Fusobacterium hwasookii species 0 1583098 1 850 1 0 619 species Fusobacterium mortiferum 2081 species Fusobacterium periodonticum 1 860 0 0 1 861 974 Fusobacterium ulcerans species species Fusobacterium necrophorum 742 859 1 0 6114 species Fusobacterium nucleatum 1 851 0 1734 species Fusobacterium varium 1 856 0 species Fusobacterium gonidiaformans 634 849 1 0 756 genus 167639 1 0 0 167642 1 756 Ilyobacter polytropus species 266 clade 0 2498710 5 phylum 266 0 67814 5 1 0 693071 5 Caldisericia 1 class 266 0 1 693072 4 Caldisericales order 1 265 693073 3 1 0 264 2 family Caldisericaceae 693074 2 1 0 262 1 genus Caldisericum 0 1 693075 261 Caldisericum exile species 13713261 clade 0 369 1783270 0 8 142182 phylum 5701 1 0 8 219685 5701 Gemmatimonadetes 21 class 7 219686 1 0 5680 130 order Gemmatimonadales Gemmatimonadaceae family 14 5550 0 1 219687 6 3227 Gemmatirosa 3 genus 1 0 2 1706036 861299 1 0 3224 species Gemmatirosa kalamazoonesis 173479 3 1 0 10 genus Gemmatimonas 2309 1 1379270 0 1003 species Gemmatimonas phototrophica 173480 1 0 1296 species Gemmatimonas aurantiaca 13705119 clade 354 68336 0 Bacteroidetes 47 phylum 13692024 1 0 976 325 768503 57 0 1 36042 class 51 Cytophagia 35991 Cytophagales 165 order 1 0 768507 56 2 1853234 1 0 3 family Persicobacteraceae 920 0 1 59740 917 genus 0 1 2664020 917 no rank 1 1085624 0 species Persicobacter sp. JZB09 917 9 563798 0 1 family 6 Cyclobacteriaceae 2795 68288 3 1 0 1078 3 genus Cyclobacterium 1 320787 0 species Cyclobacterium amurskyense 524 1 104 0 species Cyclobacterium marinum 551 752 genus 1 Echinicola 2 390846 0 1 1 390884 0 species Echinicola vietnamensis 751 Algoriphagus genus 20 467 0 1 246875 2 species Algoriphagus sp. M8-2 447 1 1727163 0 0 1 232244 492 genus 0 232259 1 Belliella baltica species 492 257 family 2 Amoebophilaceae 1501348 3 0 1 138 genus 0 1 273135 138 no rank 0 2641185 1 249402 1 0 138 species Cardinium endosymbiont of Encarsia pergandiella genus 117 1 281119 0 0 1 281120 117 Candidatus Amoebophilus asiaticus species 1701 11 family Flammeovirgaceae 200667 3 1 0 0 59739 1 genus 777 no rank 777 2637820 1 0 777 species Flammeovirga sp. MY04 1191459 1 0 913 no rank 1 340671 0 913 species Flammeovirgaceae bacterium 311 1 1257021 0 Hymenobacteraceae 60 family 19745 1 0 1853232 16 genus 110 Hymenobacter 14678 89966 8 0 1 0 1411621 1 Hymenobacter sedentarius species 1996 species Hymenobacter swuensis 1757 1 1446467 0 10815 no rank 0 2615202 5 1484118 1 0 2769 species Hymenobacter sp. PAMC 26628 species Hymenobacter sp. DG25A 1691 1 1385663 0 1484116 1 0 1958 species Hymenobacter sp. PAMC 26554 species Hymenobacter sp. APR13 2820 1 1356852 0 species Hymenobacter sp. DG25B 1577 1385664 1 0 2166 Pontibacter genus 8 0 1 3 323449 388950 1 0 species Pontibacter akesuensis 1383 1 400092 0 775 species Pontibacter korlensis 2841 Rufibacter genus 22 0 1 4 1379908 0 512763 1 904 Rufibacter tibetensis species 2639626 2 0 no rank 1915 710 Rufibacter sp. DG15C species 0 1379909 1 Rufibacter sp. DG31D species 1205 0 1379910 1 Bernardetiaceae 12 family 663 1 0 3 1937968 1937972 2 0 1 651 genus 2 Bernardetia 649 Bernardetia litoralis species 0 999 1 family 622 2 2762301 0 622 genus 2 Marivirga 869806 2 0 1 1006 1 0 species Marivirga tractuosa 620 9123 Cytophagaceae family 50 0 1 17 89373 982 genus 6 Fibrella 2 861914 0 1 1 2620963 0 976 no rank 976 species Fibrella sp. ES10-3-2-2 1 1834519 0 978 2 1 0 11 genus Cytophaga 654 0 1 985 643 Cytophaga hutchinsonii species 1 0 107 6 Spirosoma 33 genus 4379 1211326 1 0 species Spirosoma aerolatum 983 564064 1 0 784 species Spirosoma rigui 0 1379870 1 Spirosoma radiotolerans species 998 0 1 1178516 Spirosoma montaniterrae species 828 Spirosoma sp. HA7 species 753 0 2057025 1 653 2 genus Leadbetterella 2 319458 1 0 Leadbetterella byssophila species 651 0 316068 1 105 2 0 1 1134 genus 8 Runella 1126 Runella slithyformis species 0 1 106 120831 2 1 0 1271 5 genus Dyadobacter 1266 Dyadobacter fermentans species 0 1 94254 200643 72 1 0 71 class Bacteroidia 13538707 4952 Marinilabiliales 13 order 1 0 11 1970189 1261 family 1 Marinilabiliaceae 3 558415 0 1 0 1 1193324 2 1260 Alkalitalea genus 2 species Alkalitalea saponilacus 1258 889453 1 0 1970190 2 0 646 family Salinivirga genus 7 646 0 1 1970191 2 0 1307839 1 639 Salinivirga cyanobacteriivorans species Marinifilaceae family 1 1180 0 1 2 1573805 genus 1179 0 2060722 1 0 1 1717717 Marinifilaceae bacterium SPP2 species 1179 1 0 1471398 3 Prolixibacteraceae 6 family 1852 2 1471399 0 1 genus 17 Draconibacterium 1846 species Draconibacterium orientale 1829 1 1168034 0 13533684 Bacteroidales 1895 order 1 0 60 171549 1853231 3 0 1 family 3 Odoribacteraceae 223094 0 1 283168 2 Odoribacter genus 30 223091 1 28118 0 species Odoribacter splanchnicus 223061 family 10172 2005520 6 0 1 0 2 307628 4294 Petrimonas 2 genus 0 1642646 1 Petrimonas mucosa species 4292 0 1 1784836 2 2437 Fermentimonas genus 3 0 1 1562970 2434 Fermentimonas caenicola species 0 1 294702 2 3441 Proteiniphilum genus 5 Proteiniphilum saccharofermentans species 3436 0 1642647 1 906 no rank 0 1 185291 1400053 1 0 species Bacteroidales bacterium CF 906 0 1 2005523 3 Paludibacteraceae family 2 2233 2231 Paludibacter 2 genus 1 0 346096 2 0 185300 1 2229 Paludibacter propionicigenes species no rank 10599517 333046 5 0 genus 10598874 909656 3 0 0 1 357276 9112640 Bacteroides dorei species 1426973 species Bacteroides vulgatus 821 1 0 376805 1 0 59261 species Bacteroides salanitronis 1 0 2 511434 643 Candidatus Azobacteroides 2 genus Candidatus Azobacteroides pseudotrichonymphae species 641 0 511435 1 0 1 171550 5 119779 Rikenellaceae family 20 1664 Mucinivorans 15 genus 1 0 1611681 2 Mucinivorans hirudinis species 1649 0 1 1433126 1 0 2 239759 Alistipes 18 genus 118095 species Alistipes finegoldii 118077 1 214856 0 11 171552 1 0 176299 6 family Prevotellaceae 176293 152 genus Prevotella 10 838 1 0 28131 1 0 species Prevotella intermedia 152834 0 76123 1 2062 Prevotella enoeca species 589436 1 0 species Prevotella fusca 2172 52227 1 0 4950 species Prevotella dentalis 0 28132 1 Prevotella melaninogenica species 4516 1177574 1 0 species Prevotella jejuni 2884 Prevotella denticola species 2521 0 28129 1 species Prevotella ruminicola 3137 839 1 0 2638335 1 0 no rank 1065 1065 Prevotella sp. oral taxon 299 species 0 1 652716 0 1 4 171551 Porphyromonadaceae family 20 7508 Porphyromonas 22 genus 7488 1 0 3 836 0 837 1 5431 Porphyromonas gingivalis species 28123 1 0 species Porphyromonas asaccharolytica 2035 Bacteroidaceae 22 family 1888225 1 0 815 11 1888203 Bacteroides 99521 genus 1 0 816 10 species Bacteroides ovatus 149817 1 28116 0 355189 Bacteroides caccae species 0 47678 1 Bacteroides fragilis species 626614 0 1 817 1 1796613 0 species Bacteroides caecimuris 155053 43609 species Bacteroides zoogleoformans 1 28119 0 0 290053 1 61327 Bacteroides helcogenes species species Bacteroides heparinolyticus 49249 28113 1 0 1 246787 0 78720 species Bacteroides cellulosilyticus 818 1 0 269104 species Bacteroides thetaiotaomicron 331181 Tannerellaceae 94 family 1 0 7 2005525 15371 Tannerella 28 genus 1 0 3 195950 2620507 1 0 4166 no rank 0 712710 1 Tannerella sp. oral taxon HOT-286 species 4166 11177 Tannerella forsythia species 0 28112 1 0 1 3 375288 315716 Parabacteroides genus 184 2649774 1 0 no rank 242305 242305 species Parabacteroides sp. CT06 1 2025876 0 0 1 823 73227 Parabacteroides distasonis species 172875 Barnesiellaceae 15 family 1 0 3 2005519 397864 2 1 0 95 genus Barnesiella 172860 species Barnesiella viscericola 172765 397865 1 0 23 117747 1 0 14363 7 class Sphingobacteriia 22 200666 0 1 order 64 Sphingobacteriales 14356 0 1 84566 21 Sphingobacteriaceae family 29 14292 84567 6 1 0 6 genus Pedobacter 3773 892 species Pedobacter steynii 1 430522 0 0 984 1 719 Pedobacter heparinus species Pedobacter cryoconitis species 715 0 1 188932 species Pedobacter ginsengisoli 581 363852 1 0 2628915 1 0 860 no rank 860 Pedobacter sp. PACM 27299 species 0 1727164 1 no rank 973 84568 1 0 1986952 1 0 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 973 1 1649482 0 genus 1011 0 151895 1 1011 Pseudopedobacter saltans species 833 2 genus Solitalea 2 929509 1 0 995 1 0 831 species Solitalea canadensis 1 0 6 28453 4731 Sphingobacterium 17 genus 0 1010 1 Sphingobacterium mizutaii species 695 no rank 4019 2609468 4 0 species Sphingobacterium sp. 21 1230 743722 1 0 1043 species Sphingobacterium sp. G1-14 1 2003121 0 0 1 1538644 728 Sphingobacterium sp. ML3W species 0 1933220 1 Sphingobacterium sp. B29 species 1018 Mucilaginibacter 16 genus 2942 1 0 4 423349 Mucilaginibacter sp. BJC16-A31 species 643 0 1 1234841 0 2617802 1 880 no rank 880 Mucilaginibacter sp. PAMC 26640 species 0 1 1300914 1403 Mucilaginibacter gotjawali species 0 1 1550579 1937959 7 0 1 class 6 Saprospiria 1672 1936988 6 0 1 order 10 Saprospirales 1666 89374 2 0 family 509 0 1 1007 2 509 Saprospira genus 1 0 1 1008 508 Saprospira grandis species 1937961 3 1 0 1147 2 family Haliscomenobacteraceae 1145 genus 3 Haliscomenobacter 2349 2 0 1 species Haliscomenobacter hydrossis 1142 2350 1 0 8129 Chitinophagia class 6 0 1 1853228 16 8123 Chitinophagales order 13 0 1 1853229 15 0 1 563835 14 Chitinophagaceae family 34 8110 1825 4 genus Niabella 379899 3 1 0 1 1176587 0 species Niabella ginsenosidivorans 1026 0 446683 1 Niabella soli species 795 0 1 79328 3 2538 Chitinophaga genus 5 1 79329 0 1733 species Chitinophaga pinensis 800 Chitinophagaceae bacterium 13 species 0 2029983 1 genus 1075 1 354354 0 354356 1 0 1075 species Niastella koreensis 1321 genus 3 Filimonas 649460 2 0 1 0 1 477680 Filimonas lacunae species 1318 599 Flavisolibacter genus 2 0 1 398041 2 Flavisolibacter tropicus species 597 0 1 1492898 718 Arachidicoccus 1 genus 1 0 2 1769012 no rank 717 2636138 1 0 1 1850526 0 717 species Arachidicoccus sp. BS20 85248 class 50 Flavobacteriia 117743 142 0 1 0 1 141 200644 Flavobacteriales order 196 85198 2762318 21 0 37316 family 10 2782232 0 8063 no rank 2782228 1 0 1003 genus 1 536441 0 species Chryseobacterium taklimakanense 1003 1 0 9 59732 7060 Chryseobacterium 22 genus Chryseobacterium gallinarum species 776 0 1 1324352 no rank 2359 2593645 3 0 1721091 1 0 643 species Chryseobacterium sp. IHB B 17019 817 species Chryseobacterium sp. StRB126 1 878220 0 899 Chryseobacterium sp. T16E-39 species 0 2015076 1 0 1 253 Chryseobacterium indologenes species 1749 1265445 1 0 species Chryseobacterium camelliae 804 1685010 1 0 species Chryseobacterium glaciei 723 0 558152 1 627 Chryseobacterium piperi species 2 34084 1 0 2184 253 genus Riemerella 0 34085 1 Riemerella anatipestifer species 1931 0 1 28250 2 21373 Ornithobacterium genus 59 0 1 28251 21314 Ornithobacterium rhinotracheale species 0 1 1013 226 genus 1 1014 0 226 species Weeksella virosa 5470 Elizabethkingia 23 genus 1 0 308865 6 1 1756150 0 species Elizabethkingia genomosp. 4 656 1756149 1 0 666 species Elizabethkingia genomosp. 3 1571 species Elizabethkingia miricola 172045 1 0 species Elizabethkingia meningoseptica 787 238 1 0 1117645 1 0 species Elizabethkingia anophelis 1767 0 2 1333713 484 family Owenweeksia genus 4 484 0 1 267986 2 0 1 253245 Owenweeksia hongkongensis species 480 11 family Cryomorphaceae 1 246874 0 0 39782 9 family 927 927 Blattabacterium 67 genus 1 0 9 34098 0 2647581 6 no rank 581 Blattabacterium sp. (Blatta orientalis) species 81 0 367806 1 species Blattabacterium sp. (Nauphoeta cinerea) 72 1 1316444 0 104 species Blattabacterium sp. (Mastotermes darwiniensis) 39768 1 0 0 1186051 1 95 Blattabacterium sp. (Blaberus giganteus) species 1 367488 0 130 species Blattabacterium sp. (Periplaneta americana) Blattabacterium sp. (Blattella germanica) species 99 0 1 624186 134 Blattabacterium punctulatus species 0 1 164514 species Blattabacterium cuenoti 145 1 1653831 0 family 105 0 1 1755828 genus 105 1 1755829 0 1 242600 0 105 species Ichthyobacterium seriolicida Crocinitomicaceae 1 family 949 1 0 3 1853230 948 Fluviicola genus 93 0 1 2 332102 1 191579 0 species Fluviicola taffensis 855 Flavobacteriaceae 1964 family 45047 1 0 49546 101 Maribacter genus 5 1768 0 1 5 252356 0 1178778 1 410 Maribacter cobaltidurans species 3 2615042 0 1353 no rank 537 Maribacter sp. 1_2014MBL_MicDiv species 0 1 1644130 397 Maribacter sp. T28 species 0 1836467 1 species Maribacter sp. HTCC2170 419 1 313603 0 genus 272 0 336276 1 2615019 1 0 no rank 272 272 Olleya sp. Bg11-27 species 0 2058135 1 1 0 3 111500 810 Muricauda 5 genus 0 1 516051 408 Muricauda lutaonensis species 0 111501 1 Muricauda ruestringensis species 397 291183 4 0 1 genus 11 Lacinutrix 1011 617 no rank 0 2 2647285 312 species Lacinutrix sp. 5H-3-7-4 1 983544 0 2057808 1 0 species Lacinutrix sp. Bg11-31 305 Lacinutrix venerupis species 383 0 1486034 1 417127 2 0 1 586 genus 1 Zunongwangia 0 398743 1 585 Zunongwangia profunda species 0 261827 1 519 genus 1 1736674 0 519 species Algibacter alginicilyticus 1016 15 0 1 8045 genus 67 Capnocytophaga 916 Capnocytophaga sputigena species 0 1 1019 0 1 45243 490 Capnocytophaga haemolytica species 1848904 1 0 species Capnocytophaga stomatis 729 2640652 6 0 2977 no rank Capnocytophaga sp. ChDC OS43 species 511 0 1 209053 0 1 1945658 395 Capnocytophaga sp. H4358 species 549 species Capnocytophaga sp. oral taxon 864 1316593 1 0 species Capnocytophaga sp. oral taxon 878 704 1 1316596 0 Capnocytophaga sp. H2931 species 331 0 1 1945657 0 1 1705617 Capnocytophaga sp. oral taxon 323 species 487 28188 1 0 species Capnocytophaga canimorsus 652 species Capnocytophaga ochracea 539 1 1018 0 1 28189 0 species Capnocytophaga cynodegmi 623 Capnocytophaga gingivalis species 408 0 1017 1 0 327575 1 Capnocytophaga leadbetteri species 644 5 genus Dokdonia 770 326319 4 1 0 2615033 2 0 no rank 479 0 1 983548 Dokdonia sp. 4H-3-7-5 species 225 254 species Dokdonia sp. MED134 313590 1 0 0 326320 1 286 Dokdonia donghaensis species 453 genus 1 Tamlana 2 393005 0 1 Tamlana sp. UJ94 species 452 0 1 2069432 443 genus 1 1518147 0 0 1790137 1 443 Wenyingzhuangia fucanilytica species 4 363408 0 genus 1352 2615035 2 0 731 no rank 378 species Nonlabens sp. MB-3u-79 1 2058134 0 0 1476901 1 353 Nonlabens sp. MIC269 species 272 Nonlabens sediminis species 0 1 319236 Nonlabens dokdonensis species 349 0 1 328515 1 0 2 252306 837 Robiginitalea 3 genus 834 Robiginitalea biformata species 0 252307 1 143222 1 0 genus 550 no rank 550 0 1 2633436 0 1729720 1 550 Salegentibacter sp. T436 species 104267 5 0 1 genus 6 Tenacibaculum 1937 1 669041 0 449 species Tenacibaculum dicentrarchi 1 584609 0 613 species Tenacibaculum jejuense Tenacibaculum todarodis species 384 0 1 1850252 Tenacibaculum maritimum species 485 0 1 107401 0 1 1209327 genus 508 508 species Flavivirga eckloniae 1 1803846 0 2 genus Winogradskyella 725 286104 3 1 0 0 2615021 2 no rank 723 0 1936080 1 Winogradskyella sp. J14-2 species 223 1 754409 0 500 species Winogradskyella sp. PG-2 0 1204360 1 genus 663 0 762954 1 663 Siansivirga zeaxanthinifaciens species genus 310 0 83612 1 0 57029 1 310 Psychroflexus torquis species 779 7 genus Formosa 3 225842 1 0 2 2644710 0 772 no rank 1 1336795 0 species Formosa sp. Hel3_A1_48 456 species Formosa sp. Hel1_33_131 316 1 1336794 0 6 52959 0 1 genus 6 Polaribacter 2421 196858 3 0 1306 no rank 0 1 1529069 Polaribacter sp. BM10 species 418 600 Polaribacter sp. ALD11 species 0 1 2058137 0 1 313598 288 Polaribacter sp. MED152 species species Polaribacter reichenbachii 538 996801 1 0 1 1774273 0 species Polaribacter vadi 571 genus 455 0 153265 1 101385 1 0 455 species Aequorivita sublithincola 0 1649495 1 genus 499 2622645 1 0 499 no rank species Seonamhaeicola sp. S2-3 499 1 1936081 0 Myroides genus 35 2101 0 1 76831 5 2642485 2 0 no rank 943 Myroides sp. ZB35 species 315 0 1458492 1 1583100 1 0 species Myroides sp. A21 628 76832 1 0 808 species Myroides odoratimimus 0 480520 1 Myroides profundi species 315 0 1 4 104264 1734 Cellulophaga genus 2 0 1 59600 Cellulophaga algicola species 520 0 76594 1 490 Cellulophaga baltica species 722 species Cellulophaga lytica 979 1 0 0 1 178469 935 genus 935 species Arenibacter algicola 616991 1 0 875 genus 0 1 1176327 1 2636237 0 no rank 875 Aureitalea sp. RR4-38 species 875 0 1 2094025 5 292691 0 1 genus 6 Gramella 2226 0 411153 1 433 Gramella forsetii species Gramella sp. LPB0144 species 326 0 1 1913577 0 1 2126553 Gramella sp. SH35 species 672 1 1486245 0 species Gramella flava 789 genus 316 1 358023 0 Lutibacter profundi species 316 0 1622118 1 genus 388 0 389486 1 2648869 1 0 no rank 388 1 1453352 0 388 species Sediminicola sp. YIK13 0 1 2700084 360 genus 1 1850246 0 360 species Lutibacter sp. LPB0138 0 1 216431 407 genus Croceibacter atlanticus species 407 0 313588 1 no rank 1224 2 61432 0 species Flavobacteriaceae bacterium UJ101 609 1 1150389 0 531844 1 0 species Flavobacteriaceae bacterium 3519-10 615 genus 17 Flavobacterium 6261 237 9 0 1 Flavobacterium gilvum species 1106 0 1 1492737 1614 Flavobacterium johnsoniae species 0 986 1 996 1 0 993 species Flavobacterium columnare 1 96345 0 species Flavobacterium psychrophilum 438 1306519 1 0 598 species Flavobacterium commune 0 55197 1 Flavobacterium branchiophilum species 524 0 1 1763534 404 Flavobacterium crassostreae species 0 312277 1 Flavobacterium indicum species 567 2 112040 1 0 543 1 genus Zobellia 542 species Zobellia galactanivorans 63186 1 0 313602 2 0 163 no rank 0 1 336809 genus 149 149 Candidatus Sulcia muelleri species 0 1 336810 0 1 1940138 14 genus 0 1 1415657 14 Candidatus Walczuchella monophlebidarum species 148 order Bacteroidetes Order II. Incertae sedis 7816 1100069 7 1 0 7668 Rhodothermaceae 61 family 1 0 563843 6 2 29548 1 0 10 genus Rhodothermus 3378 Rhodothermus marinus species 3368 0 1 29549 0 1 146918 2 1461 Salinibacter genus 2 0 1 146919 1459 Salinibacter ruber species 2768 no rank 0 1 1196022 0 1 1779382 Rhodothermaceae bacterium RA species 2768 0 7 1134404 phylum 1314 7 795747 0 1 class 5 Ignavibacteria 1314 Ignavibacteriales order 17 1309 0 1 6 795748 0 1 3 1334117 Melioribacteraceae family 6 523 1 0 1134403 2 517 Melioribacter 4 genus 0 1134405 1 513 Melioribacter roseus species Ignavibacteriaceae family 2 769 0 1 795749 2 795750 1 0 767 genus 1 591197 0 species Ignavibacterium album 767 0 22 1090 phylum 11781 22 191410 1 0 67 class Chlorobia 11781 1 0 21 191411 Chlorobiales 117 order 11714 11597 Chlorobiaceae 109 family 1 0 191412 20 5 1101 1 0 2 genus Prosthecochloris 2120 0 1 1102 Prosthecochloris aestuarii species 444 1674 no rank 0 2632826 3 730 species Prosthecochloris sp. GSB1 281093 1 0 492 species Prosthecochloris sp. HL-130-GSB 1 1974213 0 452 Prosthecochloris sp. CIB 2401 species 0 1868325 1 565 Chloroherpeton 5 genus 1 0 100715 2 0 1 100716 Chloroherpeton thalassium species 560 256319 4 0 1 genus 46 Chlorobaculum 4196 1 274537 0 species Chlorobaculum limnaeum 1633 0 274539 1 1313 Chlorobaculum parvum species 1 1097 0 species Chlorobaculum tepidum 1204 274493 8 0 no rank 4607 Pelodictyon genus 10 2013 0 1 3 1099 482 Pelodictyon phaeoclathratiforme species 0 34090 1 1521 Pelodictyon luteolum species 0 1 1100 1091 5 0 1 2594 genus 7 Chlorobium Chlorobium phaeobacteroides species 721 0 1096 1 250 species Chlorobium chlorochromatii 1 337090 0 Chlorobium phaeovibrioides species 980 0 1 1094 1092 1 0 636 species Chlorobium limicola 2104 phylum 0 5 65842 Fibrobacteria 25 class 2104 1 0 5 204430 1 order Fibrobacterales 2079 4 218872 1 0 7 family Fibrobacteraceae 2078 204431 3 1 0 2071 1 genus Fibrobacter 832 2 1 0 0 833 1 Fibrobacter succinogenes species 2070 0 456828 2 337 phylum 337 Candidatus Cloacimonas genus 12 0 1 2 456826 325 Candidatus Cloacimonas acidaminovorans species 0 456827 1 phylum 840 0 5 1930617 1 0 5 1962850 Calditrichae 1 class 840 0 1 1962852 4 Calditrichales order 16 839 823 Calditrichaceae 2 family 1 0 1962854 3 genus 2 Caldithrix 821 2 187144 0 1 1 187145 0 species Caldithrix abyssi 819 1697 1783272 0 6746456 clade phylum 261 Firmicutes 5100404 1239 716 0 1 Erysipelotrichia 12 class 38380 1 0 526524 11 order 73 Erysipelotrichales 38368 526525 10 0 1 38295 Erysipelotrichaceae 301 family 1 0 9 128827 1982 genus 26 Erysipelothrix 1647 3 0 1 1 1648 0 species Erysipelothrix rhusiopathiae 1102 species Erysipelothrix larvae 854 1514105 1 0 no rank 26404 0 1 544447 0 1 1834207 Erysipelotrichaceae bacterium I46 species 26404 1 0 1729679 2 Faecalibaculum 134 genus 4477 Faecalibaculum rodentium species 4343 0 1 1702221 Turicibacter genus 77 5131 0 1 2 191303 no rank 5054 1 2638206 0 5054 Turicibacter sp. H121 species 0 1 1712675 class 11 Tissierellia 22556 1737404 19 0 1 1737405 16 1 0 21819 512 order Tissierellales 785 1 family Gottschalkiaceae 3 2042895 1 0 2 1505664 0 1 genus 1 Gottschalkia 784 783 Gottschalkia acidurici species 0 1 1556 family 4257 Peptoniphilaceae 20522 1570339 12 0 1 1285 Parvimonas genus 13 0 1 2 543311 0 33033 1 Parvimonas micra species 1272 9 genus Finegoldia 1305 2 150022 1 0 1296 Finegoldia magna species 0 1 1260 953 Peptoniphilus 7 genus 1 0 162289 2 946 no rank 2637196 1 0 946 Peptoniphilus sp. ING2-D1G species 0 1912856 1 11168 Murdochiella 2 genus 1 0 1161127 2 species Murdochiella vaginalis 11166 1 1852373 0 Anaerococcus genus 12 1554 0 1 3 165779 Anaerococcus prevotii species 708 0 33034 1 1 1870984 0 834 species Anaerococcus mediterraneensis 2 1737407 0 726 no rank 0 1 1582879 2 726 Ezakiella genus 17 709 Ezakiella massiliensis species 0 1852374 1 0 1 91061 425 702252 Bacilli class 327 449069 order 4830 Lactobacillales 163 186826 0 1 320492 Streptococcaceae 2938 family 1 0 49 1300 1357 5 0 1 genus 25 Lactococcus 5096 1358 1 0 species Lactococcus lactis 3320 550 Lactococcus raffinolactis species 0 1 1366 1 1364 0 482 species Lactococcus piscium 1363 1 0 719 species Lactococcus garvieae 312458 5759 genus Streptococcus 1301 43 1 0 species group 53556 0 671232 3 species Streptococcus anginosus 45611 1 1328 0 species Streptococcus intermedius 1245 1338 1 0 6700 species Streptococcus constellatus 1 76860 0 species Streptococcus mutans 800 1309 1 0 8250 no rank 0 7 2608887 1 1319 0 species Streptococcus sp. 'group B' 439 0 1 1902136 370 Streptococcus sp. NPS 308 species 1 1759399 0 894 species Streptococcus sp. A12 1031 Streptococcus sp. I-G2 species 0 1 1156431 species Streptococcus sp. I-P16 1108 1 1156433 0 712633 1 0 399 species Streptococcus sp. oral taxon 431 0 1839799 1 4009 Streptococcus sp. FDAARGOS_192 species Streptococcus pneumoniae species 1261 0 1 1313 0 1 45634 759 Streptococcus cristatus species species Streptococcus gordonii 1612 1302 1 0 1 1305 0 species Streptococcus sanguinis 1247 1845 species group 2 119603 0 species Streptococcus equi 982 1 1336 0 863 Streptococcus dysgalactiae species 0 1334 1 Streptococcus pseudopneumoniae species 415 0 257758 1 2637 species Streptococcus equinus 1 1335 0 0 1318 1 Streptococcus parasanguinis species 3501 1 150055 0 species Streptococcus lutetiensis 1963 1307 1 0 species Streptococcus suis 26991 0 1308 1 131544 Streptococcus thermophilus species 0 102684 1 2786 Streptococcus infantarius species 464 Streptococcus halotolerans species 0 1 1814128 Streptococcus oralis species 1620 0 1 1303 Streptococcus uberis species 489 0 1349 1 0 1314 1 2898 Streptococcus pyogenes species 0 1 1811193 Streptococcus pantholopis species 624 467 Streptococcus pluranimalium species 0 1 82348 315405 1 0 species Streptococcus gallolyticus 2248 species Streptococcus salivarius 13595 1304 1 0 Streptococcus parauberis species 883 0 1 1348 0 1 59310 1132 Streptococcus macedonicus species 28772 Streptococcus agalactiae species 0 1311 1 197614 1 0 7919 species Streptococcus pasteurianus 526 Streptococcus marmotae species 0 1825069 1 0 400065 1 Streptococcus merionis species 415 Streptococcus mitis species 2533 0 1 28037 1888195 1 0 644 species Streptococcus himalayensis 903 Streptococcus iniae species 0 1346 1 species Streptococcus acidominimus 1400 1 1326 0 186828 11 1 0 5 family Carnobacteriaceae 4225 3 1470540 0 1 genus 5 Jeotgalibaca 1022 0 2621505 1 no rank 609 Jeotgalibaca sp. PTS2502 species 609 0 1903686 1 Jeotgalibaca dankookensis species 408 0 1 708126 0 1 191769 2 Marinilactibacillus genus 5 662 0 1 2632303 657 no rank 657 Marinilactibacillus sp. 15R species 0 1911586 1 1 0 2747 5 Carnobacterium 42 genus 2536 2751 1 0 species Carnobacterium maltaromaticum 614 563 Carnobacterium inhibens species 0 1 147709 0 257487 2 no rank 1317 0 1 1564681 617 Carnobacterium sp. CP1 species 208596 1 0 700 species Carnobacterium sp. 17-4 1 263855 0 no rank 523 1 1993866 0 523 species Lactobacillales bacterium 5 family Aerococcaceae 3713 186827 8 1 0 3708 genus 146 Aerococcus 1375 7 0 1 645 Aerococcus urinaeequi species 0 51665 1 species Aerococcus urinae 579 1 1376 0 0 1 128944 386 Aerococcus urinaehominis species 119206 1 0 species Aerococcus sanguinicola 591 species Aerococcus viridans 460 1 1377 0 0 1 87541 Aerococcus christensenii species 901 0 1 81852 18 Enterococcaceae family 48 64078 Enterococcus genus 3061 61339 0 1 1350 12 45836 Enterococcus faecium species 0 1 1352 1107 species Enterococcus durans 53345 1 0 682 Enterococcus mundtii species 0 53346 1 species Enterococcus casseliflavus 517 37734 1 0 2608891 3 0 no rank 2159 0 1 2057791 Enterococcus sp. CR-Ec1 species 614 0 2060307 1 960 Enterococcus sp. FDAARGOS_375 species 0 2060306 1 585 Enterococcus sp. FDAARGOS_163 species species Enterococcus faecalis 5277 1 1351 0 1 417368 0 438 species Enterococcus thailandicus 2005703 1 0 species Enterococcus wangshanyuanii 879 0 1 1354 1383 Enterococcus hirae species 33969 1 0 genus 696 0 33970 1 696 Melissococcus plutonius species Vagococcus 11 genus 1232 1 0 2737 3 species Vagococcus penaei 500 1 633807 0 species Vagococcus teuberi 721 519472 1 0 0 51668 1 genus 763 51669 1 0 species Tetragenococcus halophilus 763 58 33958 1 0 45983 178 family Lactobacillaceae 1253 6 1 0 2579 10 genus Pediococcus 1670797 1 0 species group 693 693 Pediococcus acidilactici species 0 1 1254 325 Pediococcus claussenii species 0 187452 1 species Pediococcus damnosus 554 51663 1 0 0 1 1255 Pediococcus pentosaceus species 587 1 114090 0 410 species Pediococcus inopinatus 2887 genus 2759736 3 0 species Lactobacillus casei 1060 1 1582 0 0 47715 1 Lactobacillus rhamnosus species 1227 600 Lactobacillus paracasei species 0 1597 1 genus 1208 3 2767893 0 505 Lactobacillus buchneri species 0 1 1581 0 1138822 1 Lactobacillus curieae species 247 456 species Lactobacillus parabuchneri 152331 1 0 1646 genus 0 3 2767842 0 1590 1 Lactobacillus plantarum species 971 0 60520 1 235 Lactobacillus paraplantarum species 1 1589 0 440 species Lactobacillus pentosus 0 1 1578 16 17622 Lactobacillus genus 1919 species Lactobacillus jensenii 393 109790 1 0 1 267818 0 291 species Lactobacillus kefiranofaciens 2842 Lactobacillus amylovorus species 0 1604 1 1 1584 0 2571 species Lactobacillus delbrueckii species Lactobacillus acetotolerans 378 1600 1 0 Lactobacillus gasseri species 896 0 1596 1 83683 1 0 species Lactobacillus amylolyticus 325 0 1 52242 Lactobacillus gallinarum species 1105 2234 species Lactobacillus helveticus 1587 1 0 1072 Lactobacillus acidophilus species 0 1579 1 Lactobacillus johnsonii species 2307 0 1 33959 1289 no rank 2620435 4 0 1 2099788 0 species Lactobacillus sp. CBA3605 278 204 species Lactobacillus sp. CBA3606 1 2099789 0 species Lactobacillus sp. wkB8 474 1545702 1 0 2108362 1 0 species Lactobacillus sp. D1501 333 0 2 2767889 1146 genus Lactobacillus backii species 372 0 1 375175 1 1610 0 species Lactobacillus coryniformis 774 0 2767876 1 2744 genus 1603 1 0 species Lactobacillus amylophilus 2744 genus 1354 2767885 2 0 754 Lactobacillus sakei species 0 1 1599 1 28038 0 species Lactobacillus curvatus 600 0 2767881 2 486 genus 53444 1 0 species Lactobacillus lindneri 236 species Lactobacillus sanfranciscensis 250 1 1625 0 0 2767886 3 1347 genus 637971 1 0 281 species Lactobacillus koreensis 267363 1 0 species Lactobacillus zymae 552 0 1 1580 514 Lactobacillus brevis species genus 614 1 2767892 0 species Lactobacillus paracollinoides 614 1 240427 0 0 2767890 1 genus 280 280 Lactobacillus hokkaidonensis species 0 1193095 1 2742598 3 0 2467 genus 1 1613 0 species Lactobacillus fermentum 680 681 species Lactobacillus mucosae 1 97478 0 Lactobacillus reuteri species 1106 0 1598 1 6 2767879 0 3327 genus 1 1612 0 species Lactobacillus farciminis 645 1 1602 0 species Lactobacillus alimentarius 478 0 1 1007676 643 Lactobacillus ginsenosidimutans species Lactobacillus allii species 438 0 1847728 1 0 1074467 1 Lactobacillus heilongjiangensis species 590 1 392416 0 species Lactobacillus crustorum 533 0 2767887 4 5877 genus 0 1 1623 Lactobacillus ruminis species 1525 1733 species Lactobacillus salivarius 1 1624 0 662 species Lactobacillus acidipiscis 89059 1 0 0 1601 1 Lactobacillus agilis species 1957 2767877 1 0 221 genus 221 Lactobacillus kunkeei species 0 148814 1 13 family Leuconostocaceae 5225 17 81850 1 0 370 genus 0 46254 1 Oenococcus oeni species 370 0 1247 1 1 0 6 46255 Weissella 6 genus 1929 325 Weissella ceti species 0 1 759620 299 species Weissella jogaejeotgali 1631871 1 0 251 species Weissella paramesenteroides 1249 1 0 Weissella cibaria species 594 0 1 137591 Weissella koreensis species 454 0 165096 1 2913 Leuconostoc genus 35 0 1 9 1243 species Leuconostoc citreum 314 1 33964 0 Leuconostoc carnosum species 353 0 1 1252 1244 1 0 407 species Leuconostoc gelidum 781 Leuconostoc mesenteroides species 0 1245 1 1 255248 0 187 species Leuconostoc garlicum Leuconostoc lactis species 219 0 1 1246 0 136609 1 332 Leuconostoc kimchii species 2685106 1 0 285 no rank Leuconostoc sp. C2 species 285 0 979982 1 0 1 1385 261 252856 Bacillales order 711 8 539002 0 no rank 3612 no rank 672 0 539738 1 672 genus 0 1 1378 0 2624949 1 no rank 672 species Gemella sp. oral taxon 928 672 1785995 1 0 7 539742 0 2940 no rank 0 1 7 33986 2940 Exiguobacterium genus 149 species Exiguobacterium antarcticum 528 1 132920 0 0 2644629 4 no rank 1434 species Exiguobacterium sp. ZWU0009 209 1224749 1 0 1849031 1 0 425 species Exiguobacterium sp. U13-1 0 1 360911 553 Exiguobacterium sp. AT1b species 247 Exiguobacterium sp. MH3 species 0 1 1399115 1 332410 0 species Exiguobacterium sibiricum 829 family 1218 1 186821 0 no rank 1218 663587 1 0 1218 [Bacillus] selenitireducens species 0 85683 1 26 186818 1 0 17 family Planococcaceae 15085 1078 genus 157226 1 0 Jeotgalibacillus malaysiensis species 1078 0 1508404 1 3 648800 1 0 1771 4 genus Solibacillus 766 no rank 2637870 1 0 1 2048654 0 766 species Solibacillus sp. R5-41 0 1 76853 1001 Solibacillus silvestris species 2 1649 1 0 4 genus Kurthia 703 1 2644826 0 no rank 699 699 species Kurthia sp. 11kri321 1750719 1 0 5 1569 1 0 35 genus Sporosarcina 4048 2 2647733 0 no rank 1672 1 1930546 0 780 species Sporosarcina sp. P37 Sporosarcina sp. P33 species 892 0 1 1930764 species Sporosarcina ureae 1632 1 1571 0 species Sporosarcina psychrophila 709 1 1476 0 482 Rummeliibacillus 2 genus 1 0 648802 2 0 241244 1 Rummeliibacillus stabekisii species 480 6986 Planococcus genus 96 0 1 1372 12 0 1 414778 Planococcus donghaensis species 338 species Planococcus halocryophilus 421 1215089 1 0 0 1598147 1 492 Planococcus faecalis species 0 2 2662419 no rank 1123 360 species Planococcus sp. PAMC 21323 1 1526927 0 Planococcus sp. MB-3u-03 species 763 0 2058136 1 Planococcus sp. L10.15 species 344 0 1 1302659 161360 1 0 species Planococcus antarcticus 965 1 192421 0 1464 species Planococcus maritimus 419 Planococcus kocurii species 0 1 1374 1038856 1 0 552 species Planococcus plakortidis Planococcus rifietoensis species 772 0 1 200991 186817 116 0 1 104882 family 335 Bacillaceae 1 genus Amphibacillus 643 2 29331 1 0 1449 1 0 species Amphibacillus xylanus 642 912 genus 0 175304 1 Lentibacillus amyloliquefaciens species 912 0 1472767 1 3831 genus Bacillus 62516 1386 58 1 0 0 1792192 1 893 species group 893 Bacillus altitudinis species 0 293387 1 species Bacillus megaterium 1814 1 1404 0 1 1178537 0 622 species Bacillus xiamenensis species Bacillus glycinifermentans 1173 1 1664069 0 species Bacillus smithii 557 1479 1 0 1 632773 0 species Bacillus beveridgei 802 species Bacillus safensis 1236 561879 1 0 324767 1 0 1297 species Bacillus infantis 1 135735 0 830 species Bacillus endophyticus Bacillus methanolicus species 735 0 1471 1 3260 Bacillus pumilus species 0 1 1408 1 33932 0 species Bacillus cohnii 616 Bacillus gibsonii species 157 0 1 79881 9 653685 0 13365 species group 1144 Bacillus licheniformis species 0 1402 1 1004 Bacillus atrophaeus species 0 1 1452 0 1 1423 4660 Bacillus subtilis species 990 Bacillus paralicheniformis species 0 1648923 1 Bacillus vallismortis species 141 0 1 72361 0 1938374 3 4067 species subgroup 633 Bacillus siamensis species 0 1 659243 1 492670 0 species Bacillus velezensis 1602 species Bacillus amyloliquefaciens 1832 1 1390 0 119858 1 0 species Bacillus sonorensis 1359 1547283 1 0 species Bacillus weihaiensis 623 698 Bacillus horikoshii species 0 79883 1 185979 19 0 9347 no rank Bacillus sp. OxB-1 species 920 0 1 98228 642 species Bacillus sp. X1(2014) 1 1565991 0 728 Bacillus sp. H15-1 species 0 1856406 1 0 1 1446792 Bacillus sp. Pc3 species 444 0 1 1774743 641 Bacillus sp. SDLI1 species 321 Bacillus sp. JS species 0 1127744 1 0 1570330 1 159 Bacillus sp. BH072 species 224 Bacillus sp. YP1 species 0 1574141 1 0 666686 1 Bacillus sp. 1NLA3E species 891 1 1837130 0 species Bacillus sp. FJAT-14266 611 728 species Bacillus sp. 1s-1 1 2026248 0 0 1 1941347 415 Bacillus sp. 275 species 0 1628753 1 175 Bacillus sp. LM 4-2 species 644 Bacillus sp. IHB B 7164 species 0 1 1827146 354 Bacillus sp. MD-5 species 0 1 2009331 756828 1 0 563 species Bacillus sp. WP8 511 Bacillus sp. SJ-10 species 0 563169 1 1 1409 0 203 species Bacillus sp. (in: Bacteria) species Bacillus sp. Lzh-5 173 1 2049935 0 0 86664 1 Bacillus flexus species 714 619 Bacillus cellulosilyticus species 0 1 1413 0 412384 1 Bacillus aryabhattai species 634 species group 16211 10 86661 0 species Bacillus bombysepticus 513 1 658666 0 species Bacillus thuringiensis 4923 1 1428 0 1721 no rank 0 2750818 3 Bacillus sp. FDAARGOS_235 species 702 0 1 1839798 0 1 2053832 Bacillus sp. HBCD-sjtu species 652 Bacillus sp. ABP14 species 367 0 1892404 1 species Bacillus anthracis 454 1 1392 0 5183 Bacillus cereus species 0 1396 1 580165 1 0 770 species Bacillus cytotoxicus 1 1405 0 2159 species Bacillus mycoides 0 1 155322 488 Bacillus toyonensis species Bacillus coagulans species 2482 0 1398 1 3 1329200 0 1 1855 genus 5 Fictibacillus 1 1221500 0 921 species Fictibacillus phosphorivorans 255247 1 0 929 species Fictibacillus arsenicus 2675229 2 0 genus 2213 0 1 264697 Bacillus muralis species 734 Bacillus simplex species 1479 0 1 1478 3263 Anoxybacillus genus 10 0 1 150247 6 0 2639704 2 no rank 1385 1 1490057 0 species Anoxybacillus sp. B7M1 717 Anoxybacillus sp. B2M1 species 668 0 1 1490052 0 1 294699 Anoxybacillus amylolyticus species 668 0 33934 1 797 Anoxybacillus flavithermus species 0 198467 1 403 Anoxybacillus gonensis species Geobacillus genus 909 11376 0 1 15 129337 1 1921421 0 species Geobacillus genomosp. 3 830 species Geobacillus thermodenitrificans 752 33940 1 0 1272 species Geobacillus stearothermophilus 1422 1 0 2642459 6 0 3124 no rank 538 Geobacillus sp. WCH70 species 0 1 471223 0 550542 1 Geobacillus sp. Y412MC52 species 480 0 544556 1 447 Geobacillus sp. Y412MC61 species 1 691437 0 species Geobacillus sp. C56-T3 466 442 Geobacillus sp. GHH01 species 0 1 1233873 581103 1 0 751 species Geobacillus sp. Y4.1MC1 0 1 129338 1000 Geobacillus subterraneus species 0 1505648 4 species group 3489 1001 species Geobacillus lituanicus 169283 1 0 Geobacillus thermoleovorans species 1301 0 33941 1 0 1462 1 550 Geobacillus kaustophilus species 0 1 33938 637 Geobacillus thermocatenulatus species 2675230 2 0 genus 1773 1197 Bacillus oceanisediminis species 0 665099 1 576 Bacillus kochii species 0 1 859143 1198 genus 5 Oceanobacillus 2 182709 0 1 Oceanobacillus iheyensis species 1193 0 182710 1 genus 23 Virgibacillus 3952 84406 7 0 1 0 1 2017483 Virgibacillus phasianinus species 648 686 species Virgibacillus halodenitrificans 1482 1 0 0 1473 1 610 Virgibacillus pantothenticus species 1 163877 0 641 species Virgibacillus necropolis 0 2 2620237 1344 no rank species Virgibacillus sp. 6R 766 1 1911587 0 Virgibacillus sp. SK37 species 578 0 1 403957 2 459532 0 1 genus 2 Terribacillus 1095 0 586416 1 1093 Terribacillus aidingensis species 1 1055323 0 genus 680 species Aeribacillus pallidus 680 1 33936 0 genus 6574 2675234 5 0 665 species Bacillus halodurans 86665 1 0 Bacillus clausii species 2453 0 1 79880 0 1 79885 646 Bacillus pseudofirmus species 1 300825 0 2196 species Bacillus lehensis species Bacillus krulwichiae 614 1 199441 0 Lysinibacillus genus 30 3553 0 1 400634 5 572 species Lysinibacillus fusiformis 1 28031 0 1421 1 0 species Lysinibacillus sphaericus 1793 species Lysinibacillus varians 606 1 1145276 0 2636778 1 0 552 no rank 552 species Lysinibacillus sp. YS11 2072025 1 0 genus 784 1 351195 0 784 Salimicrobium jeotgali species 0 1230341 1 1 1906945 0 869 genus species Parageobacillus thermoglucosidasius 869 1426 1 0 genus 1291 0 2 45667 1570 1 0 589 species Halobacillus halophilus species Halobacillus mangrovi 702 1 402384 0 Staphylococcaceae 1972 family 24778 1 0 90964 41 921 Salinicoccus genus 2 0 1 45669 2 1 407035 0 species Salinicoccus halodurans 919 0 1 4 69965 1939 Macrococcus genus 38 434 species Macrococcus canis 1 1855823 0 0 1 69966 847 Macrococcus caseolyticus species no rank 620 2619255 1 0 620 Macrococcus sp. IME1552 species 0 1 1898474 1 2005363 0 genus 322 322 species Auricoccus indicus 1 1849491 0 1 0 33 1279 Staphylococcus 675 genus 19624 Staphylococcus nepalensis species 416 0 214473 1 246432 1 0 553 species Staphylococcus equorum 1 308354 0 species Staphylococcus simiae 396 442 species Staphylococcus sciuri 1296 1 0 1 70255 0 444 species Staphylococcus condimenti 1 29385 0 507 species Staphylococcus saprophyticus 1 1284 0 species Staphylococcus hyicus 338 species Staphylococcus felis 487 46127 1 0 1 985762 0 species Staphylococcus agnetis 359 1 91994 0 no rank 413 0 1 1715860 Staphylococcus sp. AntiMn-1 species 413 0 1 985002 Staphylococcus argenteus species 465 0 29384 1 Staphylococcus kloosii species 392 715 Staphylococcus lutrae species 0 155085 1 596 Staphylococcus capitis species 0 1 29388 1 1288 0 species Staphylococcus xylosus 775 0 1 1282 815 Staphylococcus epidermidis species 1294 1 0 247 species Staphylococcus muscae 0 1286 1 754 Staphylococcus simulans species 375 species Staphylococcus piscifermentans 1 70258 0 Staphylococcus warneri species 660 0 1292 1 567 Staphylococcus schleiferi species 0 1295 1 0 1283 1 Staphylococcus haemolyticus species 440 1290 1 0 species Staphylococcus hominis 434 0 643214 1 422 Staphylococcus stepanovicii species Staphylococcus pettenkoferi species 327 0 170573 1 species Staphylococcus lugdunensis 518 28035 1 0 0 1 29382 Staphylococcus cohnii species 352 Staphylococcus pasteuri species 932 0 1 45972 Staphylococcus aureus species 2570 0 1 1280 1407 species Staphylococcus pseudintermedius 1 283734 0 Staphylococcus carnosus species 429 0 1 1281 1 61015 0 species Staphylococcus succinus 402 85937 277 family Paenibacillaceae 46 186822 1 0 0 1 4 55080 4119 Brevibacillus genus 16 0 1 1465 1345 Brevibacillus laterosporus species 1051 Brevibacillus formosus species 0 1 54913 0 1 1393 1707 Brevibacillus brevis species Paenibacillus 708 genus 75479 1 0 36 44249 0 1464 1 Paenibacillus larvae species 1280 Paenibacillus beijingensis species 1995 0 1126833 1 0 185978 13 27017 no rank Paenibacillus sp. FSL R7-0273 species 3430 0 1 1536772 1 1566358 0 764 species Paenibacillus sp. IHBB 10380 0 1536774 1 Paenibacillus sp. FSL H7-0357 species 2782 3269 species Paenibacillus sp. FSL R7-0331 1 1536773 0 species Paenibacillus sp. Y412MC10 2257 1 481743 0 1 1536770 0 1081 species Paenibacillus sp. FSL R5-0345 2303 Paenibacillus sp. FSL R5-0912 species 0 1536771 1 2069255 1 0 species Paenibacillus sp. lzh-N1 933 2746 Paenibacillus sp. 32O-W species 0 1695218 1 0 1 1870819 1924 Paenibacillus sp. BIHB4019 species 1796 species Paenibacillus sp. JDR-2 1 324057 0 0 1536775 1 Paenibacillus sp. FSL H7-0737 species 1047 2685 species Paenibacillus sp. FSL P4-0081 1 1536769 0 0 1 189426 Paenibacillus odorifer species 1088 1 172713 0 1396 species Paenibacillus kribbensis 1 414771 0 species Paenibacillus donghaensis 3149 Paenibacillus peoriae species 949 0 1 59893 1763538 1 0 species Paenibacillus crassostreae 734 species Paenibacillus naphthalenovorans 1323 1 162209 0 1 61624 0 4351 species Paenibacillus mucilaginosus 0 1 1178515 Paenibacillus swuensis species 1099 species group 2664 2044880 1 0 483937 1 0 2664 species Paenibacillus riograndensis species Paenibacillus polymyxa 3891 1406 1 0 Paenibacillus graminis species 3071 0 189425 1 species Paenibacillus ihbetae 2198 1 1870820 0 0 159743 1 1388 Paenibacillus terrae species 0 365617 1 2133 Paenibacillus sabinae species 2488 Paenibacillus borealis species 0 1 160799 0 1 169760 3853 Paenibacillus stellifer species 1 1616788 0 species Paenibacillus bovis 1696 Paenibacillus durus species 3702 0 1 44251 1 528191 0 1109 species Paenibacillus xylanexedens 1 1462996 0 species Paenibacillus yonginensis 2197 2240 no rank 0 3 85151 genus 6 Aneurinibacillus 2240 55079 3 0 1 1 1500254 0 species Aneurinibacillus soli 1311 no rank 923 0 2642329 1 923 Aneurinibacillus sp. XH2 species 0 1 1450761 2 76632 0 1 genus 15 Thermobacillus 3822 Thermobacillus composti species 3807 0 377615 1 5817 family 25 Listeriaceae 9 186820 0 1 6 1637 1 0 5141 64 genus Listeria 1638 1 0 872 species Listeria ivanovii 679 species Listeria innocua 1642 1 0 0 1 1643 Listeria welshimeri species 611 1639 1 0 species Listeria monocytogenes 2407 species Listeria seeligeri 508 1 1640 0 3 genus Brochothrix 651 2 2755 1 0 1 2756 0 648 species Brochothrix thermosphacta 8386 Alicyclobacillaceae 44 family 1 0 9 186823 2445 66 genus Alicyclobacillus 2 29330 1 0 2379 species Alicyclobacillus acidocaldarius 1 405212 0 0 1 432330 3 Tumebacillus genus 30 3444 Tumebacillus algifaecis species 996 0 1214604 1 Tumebacillus avium species 2418 0 1 1903704 Kyrpidia genus 142 2453 0 1 1129704 3 Kyrpidia sp. EA-1 species 976 0 1 2055160 1335 Kyrpidia tusciae species 0 33943 1 1 0 186824 4 Thermoactinomycetaceae 2 family 2430 1 0 1677050 2 Novibacillus 99 genus 2417 0 1 1471761 Novibacillus thermophilus species 2318 11 genus Laceyella 292635 1 0 no rank 2434 0 2 33974 1930845 2 0 1 2434 genus 12 Ndongobacter species Ndongobacter massiliensis 2422 1871025 1 0 0 1 84086 548 no rank 0 1 243899 endosymbiont 'TC1' of Trimyema compressum species 548 92705 Negativicutes class 70 0 1 31 909932 14 909929 1 0 151 order Selenomonadales 30633 2 family Sporomusaceae 2796 4 1843490 1 0 2794 46 genus Pelosinus 365348 3 1 0 1340 Pelosinus fermentans species 0 365349 1 1408 no rank 0 1 2629460 1408 Pelosinus sp. UFO1 species 0 1 484770 0 1 9 1843491 Selenomonadaceae family 171 27686 Selenomonas genus 176 25601 0 1 970 6 3 2637378 0 12462 no rank 3897 species Selenomonas sp. oral taxon 478 712538 1 0 0 1 713030 Selenomonas sp. oral taxon 136 species 4825 0 1884263 1 3740 Selenomonas sp. oral taxon 920 species 6437 species Selenomonas sputigena 1 69823 0 6526 species Selenomonas ruminantium 1 971 0 1914 genus 7 Megamonas 158846 2 0 1 Megamonas hypermegale species 1907 0 158847 1 47 order Acidaminococcales 23334 1843488 5 1 0 0 1 909930 4 Acidaminococcaceae family 51 23287 3 904 0 1 23236 genus 184 Acidaminococcus 13431 species Acidaminococcus intestini 1 187327 0 9621 Acidaminococcus fermentans species 0 905 1 1 0 11 1843489 38668 Veillonellales 1124 order 31977 10 0 1 37544 family 1067 Veillonellaceae 909928 2 1 0 6 genus Negativicoccus 3533 0 1 1702287 Negativicoccus massiliensis species 3527 29465 3 1 0 4491 138 genus Veillonella 0 248315 1 2121 Veillonella rodentium species Veillonella parvula species 2232 0 29466 1 906 2 1 0 20409 229 genus Megasphaera 20180 species Megasphaera elsdenii 907 1 0 2 39948 1 0 121 genus Dialister 8044 7923 Dialister pneumosintes species 0 39950 1 1860 class 39 Limnochordia 1676648 5 0 1 1821 64 order Limnochordales 1676649 4 1 0 0 1 3 1676650 Limnochordaceae family 28 1757 1729 Limnochorda genus 18 0 1 2 1676651 1 1555112 0 1711 species Limnochorda pilosa class 514 Clostridia 4239408 186801 221 0 1 39 68295 0 1 order 39 Thermoanaerobacterales 21235 0 1 543372 3 822 Thermoanaerobacterales Family IV. Incertae Sedis family 2 2 252965 1 0 5 genus Mahella 820 815 Mahella australiensis species 0 252966 1 1 0 13 543371 Thermoanaerobacterales Family III. Incertae Sedis 37 family 9151 0 1 44000 9 5451 Caldicellulosiruptor genus 162 species Caldicellulosiruptor bescii 732 1 31899 0 species Caldicellulosiruptor owensensis 626 55205 1 0 52766 1 0 624 species Caldicellulosiruptor lactoaceticus species Caldicellulosiruptor kronotskyensis 730 413889 1 0 413888 1 0 species Caldicellulosiruptor hydrothermalis 785 0 1 44001 555 Caldicellulosiruptor saccharolyticus species species Caldicellulosiruptor kristjanssonii 630 1 52765 0 species Caldicellulosiruptor obsidiansis 607 1 717609 0 28895 3 1 0 6 genus Thermoanaerobacterium 3663 1 29329 0 species Thermoanaerobacterium xylanolyticum 1277 0 1 1517 2380 Thermoanaerobacterium thermosaccharolyticum species 10941 Thermoanaerobacteraceae 39 family 1 0 186814 20 2 129957 0 1 1352 genus 2 Carboxydothermus 1350 Carboxydothermus hydrogenoformans species 0 1 129958 4765 251 genus Thermoanaerobacter 1754 9 1 0 29323 1 0 590 species Thermoanaerobacter brockii 450 Thermoanaerobacter italicus species 0 1 108150 0 1 496866 590 Thermoanaerobacter pseudethanolicus species 0 1 583357 457 Thermoanaerobacter mathranii species 2 2636821 0 no rank 1235 573062 1 0 611 species Thermoanaerobacter sp. X513 1 399726 0 624 species Thermoanaerobacter sp. X514 595 species Thermoanaerobacter kivui 1 2325 0 597 Thermoanaerobacter wiegelii species 0 46354 1 0 1 249529 2 Caldanaerobacter genus 8 789 species Caldanaerobacter subterraneus 781 911092 1 0 1 0 2 140458 1010 Thermacetogenium 4 genus 85874 1 0 1006 species Thermacetogenium phaeum no rank 2986 42857 4 0 Ammonifex genus 9 1187 0 1 2 42837 0 1 42838 Ammonifex degensii species 1178 2 44260 0 1 genus 1 Moorella 1799 1525 1 0 species Moorella thermoacetica 1798 2 227387 0 family 282 55 genus Thermodesulfobium 282 2 227388 1 0 Thermodesulfobium narugense species 227 0 1 184064 4211197 order 14824 Clostridiales 186802 163 0 1 1116 Syntrophomonadaceae family 1 0 1 68298 3 0 1 862 genus 633 633 species Syntrophomonas wolfei 863 1 0 genus 482 129001 1 0 0 86170 1 482 Syntrophothermus lipocalidus species family 47 Christensenellaceae 41932 990719 3 0 1 1 0 2 990721 41885 Christensenella 344 genus 41541 species Christensenella massiliensis 1805714 1 0 538999 10 0 no rank 178957 1 0 1392389 2 91166 Intestinimonas 482 genus 1297617 1 0 90684 species Intestinimonas butyriciproducens 2724 family 6 Clostridiales Family XVII. Incertae Sedis 539000 3 0 1 73918 2 0 1 genus 20 Thermaerobacter 2718 2698 species Thermaerobacter marianensis 1 73919 0 0 2717089 1 77623 genus species Mordavella sp. Marseille-P3756 77623 2086584 1 0 family 9 Clostridiales Family XIII. Incertae Sedis 7444 4 543314 0 1 3933 species [Eubacterium] sulci 143393 1 0 1 0 2 86331 Mogibacterium 4 genus 3502 species Mogibacterium diversum 3498 114527 1 0 1 0 3 31984 3906 Heliobacteriaceae 26 family 1 0 2697 2 Heliobacterium 331 genus 3880 0 35701 1 3549 Heliobacterium modesticaldum species 3 216572 1 0 7 family Oscillospiraceae 36376 2 459786 1 0 72 genus Oscillibacter 36369 1 351091 0 36297 species Oscillibacter valericigenes 20470 Eubacteriaceae 19 family 1 0 186806 5 2 1730 0 1 18828 genus 496 Eubacterium 18332 Eubacterium limosum species 0 1736 1 Acetobacterium genus 5 1623 0 1 2 33951 0 1 33952 Acetobacterium woodii species 1618 4536 51 family Symbiobacteriaceae 543349 3 1 0 4485 24 genus Symbiobacterium 2733 2 1 0 species Symbiobacterium thermophilum 4461 1 2734 0 186803 27 0 1 1646703 family 1764 Lachnospiraceae 39652 genus 0 1 28050 0 1 39485 [Eubacterium] eligens species 39652 5407 2 genus Herbinix 2 1663717 1 0 0 1 1679721 Herbinix luporum species 5405 genus 110680 0 2569097 1 0 39488 1 110680 [Eubacterium] hallii species 43 genus Roseburia 277750 2 841 1 0 277707 Roseburia hominis species 0 301301 1 7349 14 genus Anaerotignum 2 2039240 1 0 1 28446 0 species Anaerotignum propionicum 7335 2 186928 0 no rank 326945 1 39491 0 species [Eubacterium] rectale 295662 712991 1 0 31283 species Lachnospiraceae bacterium oral taxon 500 Anaerostipes genus 133 122072 0 1 2 207244 0 1 649756 Anaerostipes hadrus species 121939 3 830 1 0 107 genus Butyrivibrio 16557 1 185008 0 7926 species Butyrivibrio hungatei 8524 species Butyrivibrio proteoclasticus 43305 1 0 1506553 4 0 1 157017 genus 504 Lachnoclostridium species Lachnoclostridium phytofermentans 7233 1 66219 0 1 2608895 0 65974 no rank 0 1834196 1 Lachnoclostridium sp. YL32 species 65974 species Lachnoclostridium phocaeense 83306 1871021 1 0 29260 genus 0 2719231 1 [Clostridium] saccharolyticum species 29260 0 84030 1 2719313 1 0 374847 genus 208479 1 0 species [Clostridium] bolteae 374847 1 0 698776 2 Cellulosilyticum 3 genus 3948 3945 species Cellulosilyticum lentocellum 1 29360 0 Blautia genus 105 173455 0 1 572511 3 43778 no rank 0 2648079 1 1796616 1 0 43778 species Blautia sp. YL58 129572 Blautia hansenii species 0 1322 1 119897 family 641 Peptostreptococcaceae 10 186804 0 1 1416 genus 0 1 1849828 1505 1 0 1416 species Paeniclostridium sordellii 111971 193 genus Clostridioides 1870884 2 1 0 0 1 1496 Clostridioides difficile species 111778 genus 1671 0 1481960 1 Peptoclostridium acidaminophilum species 1671 0 1 1731 993 Acetoanaerobium genus 3 0 1 2 186831 1511 1 0 990 species Acetoanaerobium sticklandii 3 genus Filifactor 1408 2 44259 1 0 1405 species Filifactor alocis 1 143361 0 no rank 1797 1411023 1 0 1797 Peptostreptococcaceae bacterium oral taxon 929 species 0 2081703 1 1958113 family 562 Ruminococcaceae 13 541000 0 1 2305133 1 0 no rank 18929 1572656 1 0 18929 species Ruminococcaceae bacterium CPB6 253238 2 1 0 19331 10 genus Ethanoligenens 1 253239 0 19321 species Ethanoligenens harbinense 14 Herbivorax genus 0 1890281 1 557662 Flavonifractor 201 genus 1 0 2 946234 Flavonifractor plautii species 557461 0 1 292800 1 0 2 216851 Faecalibacterium 712 genus 1224757 853 1 0 1224045 species Faecalibacterium prausnitzii 3 1263 1 0 129188 318 genus Ruminococcus 1264 1 0 species Ruminococcus albus 15227 Ruminococcus bicirculans species 113643 0 1160721 1 552397 1 0 7670 no rank 0 29343 1 7670 [Clostridium] cellulosi species 12 2304686 0 family 54959 34091 no rank 1 2305130 0 1834198 1 0 34091 species Ruminiclostridium sp. KB18 2304691 1 0 genus 3577 species [Clostridium] stercorarium 3577 1 1510 0 2 236752 1 0 8 genus Fastidiosipila 775 767 species Fastidiosipila sanguinis 236753 1 0 genus 998 Ruminiclostridium 3343 1508657 2 0 1 2345 [Clostridium] cellulolyticum species 0 1521 1 Mageeibacillus 5 genus 3295 1 0 1637257 2 0 1 884684 3290 Mageeibacillus indolicus species genus 6638 3 2304692 0 Herbivorax saccincola species 1735 0 1 1677857 288965 1 0 2218 species [Clostridium] clariflavum 2685 Ruminiclostridium thermocellum species 0 1515 1 genus 3240 2304693 1 0 0 1 84032 3240 [Clostridium] thermosuccinogenes species 96705 family 630 Clostridiaceae 41 31979 0 1 1971 77 genus Candidatus Arthromitus 4 49082 1 0 0 3 2638829 1894 no rank Candidatus Arthromitus sp. SFB-mouse-NL species 585 0 1508644 1 0 1 1041504 Candidatus Arthromitus sp. SFB-rat-Yit species 666 49118 1 0 species Candidatus Arthromitus sp. SFB-mouse 643 1 1981033 0 genus Mordavella 350 genus 8 Alkaliphilus 3377 3 114627 0 1 0 1 208226 1675 Alkaliphilus metalliredigens species Alkaliphilus oremlandii species 1694 0 1 461876 Clostridium 857 genus 87838 1 0 30 1485 species Clostridium bornimense 2994 1216932 1 0 0 1 394958 Clostridium taeniosporum species 1217 Clostridium perfringens species 3650 0 1 1502 2 2614128 0 no rank 23025 Clostridium sp. SY8519 species 20382 0 1 1042156 1 755731 0 2643 species Clostridium sp. BNL1100 Clostridium cochlearium species 1550 0 1494 1 1046 Clostridium novyi species 0 1 1542 0 1501 1 2416 Clostridium pasteurianum species species Clostridium carboxidivorans 1747 1 217159 0 0 1 46867 Clostridium chauvoei species 916 Clostridium cellulovorans species 2276 0 1493 1 36745 1 0 species Clostridium saccharoperbutylacetonicum 2723 0 1 1513 Clostridium tetani species 2695 1784 species Clostridium scatologenes 1548 1 0 1991 species Clostridium saccharobutylicum 1 169679 0 Clostridium sporogenes species 1074 0 1509 1 0 1488 1 Clostridium acetobutylicum species 1513 2225 species Clostridium aceticum 84022 1 0 Clostridium estertheticum species 1715 0 1 238834 species Clostridium baratii 2329 1 1561 0 1 1534 0 2963 species Clostridium kluyveri 0 1 29341 2028 Clostridium argentinense species species Clostridium formicaceticum 2282 1 1497 0 1 1491 0 8890 species Clostridium botulinum 84023 1 0 species Clostridium autoethanogenum 1885 0 1 1519 Clostridium tyrobutyricum species 1320 0 1538 1 1829 Clostridium ljungdahlii species 1 1520 0 species Clostridium beijerinckii 3744 1492 1 0 species Clostridium butyricum 3154 2 390805 1 0 2539 6 genus Geosporobacter 0 1 1424294 2533 Geosporobacter ferrireducens species 32703 Peptococcaceae family 243 0 1 29 186807 Desulfitobacterium 54 genus 6244 1 0 36853 5 0 142877 1 865 Desulfitobacterium metallireducens species 2368 Desulfitobacterium hafniense species 0 1 49338 1 233055 0 species Desulfitobacterium dichloroeliminans 1247 species Desulfitobacterium dehalogenans 1710 36854 1 0 genus 3 Thermincola 1153 278993 2 0 1 species Thermincola potens 1150 1 863643 0 1 0 79206 4 Desulfosporosinus 266 genus 3930 0 1563 1 1249 Desulfosporosinus orientis species 0 1 885581 Desulfosporosinus acidiphilus species 1285 1130 Desulfosporosinus meridiei species 0 1 79209 5767 genus 40 Dehalobacter 4 56112 0 1 0 55583 1 Dehalobacter restrictus species 1935 0 2635733 2 3792 no rank 1866 Dehalobacter sp. DCA species 0 1147129 1 1926 species Dehalobacter sp. CF 1 1131462 0 1 2282742 0 genus 1289 0 1 58138 Desulfotomaculum acetoxidans species 1289 2825 Dehalobacterium 5 genus 1 0 51514 2 51515 1 0 2820 species Dehalobacterium formicoaceticum 2 471826 0 1 1873 genus 3 Candidatus Desulforudis 0 471827 1 Candidatus Desulforudis audaxviator species 1870 1 0 5 1562 Desulfotomaculum 216 genus 5812 species Desulfotomaculum ruminis 2220 1 1564 0 species Desulfotomaculum ferrireducens 1227 1 1833852 0 815 species Desulfotomaculum reducens 1 59610 0 0 1565 1 1334 Desulfotomaculum nigrificans species 51196 2 0 1 genus 4 Syntrophobotulus 1551 0 51197 1 1547 Syntrophobotulus glycolicus species genus 2016 0 2282740 1 0 1 102134 Desulfotomaculum gibsoniae species 2016 1062 order 4 Natranaerobiales 485256 4 0 1 1058 4 family Natranaerobiaceae 3 485255 1 0 1054 Natranaerobius 262 genus 1 0 2 375928 1 375929 0 792 species Natranaerobius thermophilus 0 2770089 3 2084 order 1207 family 0 1 2770092 genus 1207 0 1 499228 1207 Tepidanaerobacter acetatoxydans species 0 1 499229 0 2 2770093 family 877 291988 2 1 0 877 8 genus Thermosediminibacter 0 291990 1 Thermosediminibacter oceani species 869 3316 Halanaerobiales 3 order 1 0 11 53433 1163 family 5 Halobacteroidaceae 53434 4 0 1 genus 2 Acetohalobium 753 28186 2 0 1 0 1 28187 751 Acetohalobium arabaticum species 42417 1 0 genus 405 Halobacteroides halobius species 405 0 42422 1 family 5 Halanaerobiaceae 2150 972 6 0 1 770 Halothermothrix genus 6 0 1 2 32636 764 Halothermothrix orenii species 0 31909 1 Halanaerobium 5 genus 1375 1 0 3 2330 656519 1 0 species Halanaerobium hydrogeniformans 655 0 2331 1 715 Halanaerobium praevalens species 101 544448 0 22812 phylum 2 713063 0 3918 no rank 0 1 1911684 1939 Tenericutes bacterium MO-XQ species 0 1 1911683 1979 Tenericutes bacterium MZ-XQ species no rank 583 0 2 2799557 1912503 2 0 1 genus 2 Candidatus Izimaplasma 583 no rank 581 1 2624196 0 1541959 1 0 species Candidatus Izimaplasma sp. HR1 581 class 36 Mollicutes 18311 97 31969 0 1 44 2085 1 0 1 order Mycoplasmatales 7074 0 1 43 2092 7073 Mycoplasmataceae family 18 1 0 2129 3 404 Ureaplasma 3 genus 1 134821 0 236 species Ureaplasma parvum 0 2130 1 165 Ureaplasma urealyticum species genus 2093 0 2767358 12 species Mycoplasma pulmonis 183 2107 1 0 127 Mycoplasma pullorum species 0 48003 1 29555 1 0 species Mycoplasma canis 248 species Mycoplasma arginini 129 2094 1 0 2113 1 0 101 species Mycoplasma californicum species Mycoplasma bovigenitalium 139 2112 1 0 1 2115 0 species Mycoplasma fermentans 194 Mycoplasma cynos species 126 0 171284 1 species Mycoplasma bovirhinis 215 29553 1 0 Mycoplasma bovis species 350 0 1 28903 0 2110 1 186 Mycoplasma agalactiae species species Mycoplasma synoviae 95 2109 1 0 2093 27 1 0 4558 103 genus Mycoplasma no rank 302 2683645 1 0 Mycoplasma sp. (ex Biomphalaria glabrata) species 302 0 1749074 1 90 Mycoplasma dispar species 0 86660 1 2096 1 0 species Mycoplasma gallisepticum 201 0 65123 1 44 Mycoplasma wenyonii species 1 2128 0 175 species Mycoplasma flocculare 69 Mycoplasma arthritidis species 0 2111 1 37 species Mycoplasma ovis 1 171632 0 51365 1 0 species Mycoplasma yeatsii 186 species Mycoplasma haemofelis 31 29501 1 0 Mycoplasma hominis species 494 0 2098 1 78 species Mycoplasma parvum 1 984991 0 44 species Mycoplasma haemocanis 136241 1 0 398 Mycoplasma penetrans species 0 28227 1 130 species Mycoplasma bovoculi 1 45362 0 1114 species group 3 656088 0 0 2105 1 Mycoplasma leachii species 277 2095 1 0 241 species Mycoplasma capricolum 1 2102 0 596 species Mycoplasma mycoides 1 2097 0 species Mycoplasma genitalium 49 species Mycoplasma canadense 99 29554 1 0 Mycoplasma hyopneumoniae species 191 0 1 2099 16 Mycoplasma pneumoniae species 0 2104 1 0 1 2118 162 Mycoplasma mobile species Mycoplasma suis species 82 0 57372 1 2123 1 0 species Mycoplasma putrefaciens 137 Mycoplasma crocodyli species 208 0 1 50052 118 species Mycoplasma hyorhinis 1 2100 0 0 1 13 186329 3325 Acholeplasmatales order 16 Acholeplasmataceae 6 family 3309 1 0 2146 12 33926 6 0 1 genus 13 Candidatus Phytoplasma 593 species group 121 1 85632 0 Candidatus Phytoplasma australiense species 121 0 59748 1 1 85630 0 157 species group 157 species Candidatus Phytoplasma mali 1 37692 0 0 3 85620 302 species group 0 229545 1 Aster yellows witches'-broom phytoplasma species 103 202462 1 0 species Maize bushy stunt phytoplasma 96 0 100379 1 103 Onion yellows phytoplasma species 0 1 2147 5 2710 Acholeplasma genus 139 0 35623 1 590 Acholeplasma oculi species Acholeplasma brassicae species 642 0 61635 1 species Acholeplasma laidlawii 522 1 2148 0 38986 1 0 species Acholeplasma palmae 817 0 1 39 186328 7876 Entomoplasmatales order 6 0 1 14 33925 Entomoplasmataceae family 6 2445 Entomoplasma genus 6 700 0 1 46238 5 0 1 81459 Entomoplasma melaleucae species 201 species Entomoplasma freundtii 161 74700 1 0 215578 1 0 189 species Entomoplasma somnilux Entomoplasma luminosum species 143 0 1 214888 8 46239 1 0 1739 26 genus Mesoplasma 216427 1 0 species Mesoplasma chauliocola 174 species Mesoplasma florum 388 2151 1 0 2149 1 0 species Mesoplasma entomophilum 132 324078 1 0 species Mesoplasma coleopterae 223 Mesoplasma tabanidae species 142 0 1 219745 Mesoplasma lactucae species 292 0 138853 1 species Mesoplasma syrphidae 362 1 225999 0 24 2131 0 1 family 21 Spiroplasmataceae 5425 5404 Spiroplasma 157 genus 1 0 23 2132 346 species Spiroplasma cantharicola 1 362837 0 Spiroplasma sabaudiense species 257 0 216944 1 1 2145 0 342 species Spiroplasma taiwanense 0 1 47834 Spiroplasma kunkelii species 210 1 216946 0 161 species Spiroplasma turonicum Spiroplasma monobiae species 222 0 2136 1 226 species Spiroplasma diminutum 216936 1 0 245 species Spiroplasma mirum 2144 1 0 1 216933 0 species Spiroplasma chrysopicola 162 0 2137 1 Spiroplasma apis species 104 184 species Spiroplasma clarkii 2139 1 0 245 species Spiroplasma atrichopogonis 1114980 1 0 463 species Spiroplasma litorale 1 216942 0 1 216934 0 142 species Spiroplasma corruscae 331 Spiroplasma floricola species 0 216937 1 106 Spiroplasma syrphidicola species 0 216945 1 410 no rank 0 2637901 2 Spiroplasma sp. TU-14 species 205 0 1 1898044 1914410 1 0 species Spiroplasma sp. NBRC 100390 205 1 2133 0 162 species Spiroplasma citri species Spiroplasma eriocheiris 314 1 315358 0 1 216935 0 342 species Spiroplasma culicicola 0 1 216938 273 Spiroplasma helicoides species 35485 phylum 0 1297 36 219 class Deinococci 35485 36 188787 1 0 0 2762275 3 980 order Trueperaceae family 18 980 0 1 332247 3 0 1 2 332248 962 Truepera genus 2 1 332249 0 960 species Truepera radiovictrix Deinococcales 272 order 22820 1 0 118964 15 22548 Deinococcaceae 109 family 1 0 183710 14 Deinococcus 268 genus 22439 1 0 1298 13 1465 species Deinococcus geothermalis 68909 1 0 Deinococcus swuensis species 2982 0 1 1182571 Deinococcus soli Cha et al. 2016 species 2049 0 1309411 1 1 432329 0 species Deinococcus peraridilitoris 1020 1 310783 0 1158 species Deinococcus deserti 0 1182568 1 1203 Deinococcus puniceus species 1 1768108 0 species Deinococcus actinosclerus 2646 1 2623546 0 no rank 1950 1950 Deinococcus sp. NW-56 species 0 2080419 1 2444 Deinococcus gobiensis species 0 502394 1 0 309887 1 1522 Deinococcus maricopensis species 0 1299 1 Deinococcus radiodurans species 1626 0 55148 1 Deinococcus proteolyticus species 2106 1 0 68933 17 Thermales 130 order 11466 16 188786 1 0 87 family Thermaceae 11336 1 0 8 270 6827 Thermus 264 genus 864 no rank 2619321 1 0 0 1 1111069 864 Thermus sp. CCB_US3_UF1 species 0 56956 1 Thermus brockianus species 541 0 37636 1 414 Thermus scotoductus species 1 456163 0 species Thermus parvatiensis 902 667 species Thermus oshimai 1 56957 0 0 271 1 Thermus aquaticus species 1024 0 274 1 2151 Thermus thermophilus species 3 65551 0 1 genus 16 Meiothermus 1783 0 1 52022 Meiothermus silvanus species 794 0 1 277 973 Meiothermus ruber species 0 1 208447 2 2046 Oceanithermus genus 7 2039 species Oceanithermus profundus 1 187137 0 3 genus Marinithermus 593 186191 2 1 0 0 1 186192 590 Marinithermus hydrothermalis species Actinobacteria 162 phylum 1518708 1 0 201174 648 319365 940 class Coriobacteriia 84998 32 1 0 0 1 1643822 17 85793 Eggerthellales order 952 0 1 16 1643826 84841 Eggerthellaceae family 8711 1 0 84108 2 6729 Slackia 61 genus 1 84110 0 species Slackia heliotrinireducens 6668 646 genus 84162 1 0 0 1 84163 Cryptobacterium curtum species 646 2 79603 1 0 3601 2 genus Denitrobacterium species Denitrobacterium detoxificans 3599 1 79604 0 25355 Gordonibacter 303 genus 1 0 3 644652 1335613 1 0 15239 species Gordonibacter urolithinfaciens 9813 species Gordonibacter massiliensis 1841863 1 0 3 84111 1 0 25396 108 genus Eggerthella 0 2648737 1 no rank 3658 3658 Eggerthella sp. YY7918 species 0 502558 1 0 84112 1 Eggerthella lenta species 21630 447020 2 0 1 12882 genus 1 Adlercreutzia 446660 1 0 12881 species Adlercreutzia equolifaciens 1521 Phoenicibacter 2 genus 1 0 2 1981050 species Phoenicibacter massiliensis 1519 1 1944646 0 14 84999 0 1 order 611 Coriobacteriales 232632 7 1643824 1 0 293 family Atopobiaceae 21236 0 1380 1 4 Atopobium genus genus 1116 1 2767353 0 1116 species Atopobium parvulum 1382 1 0 19823 Olsenella 207 genus 1 0 4 133925 no rank 4248 0 2638792 1 Olsenella sp. oral taxon 807 species 4248 0 1 712411 0 1 133926 5333 Olsenella uli species 0 1805478 1 Olsenella sp. Marseille-P2300 species 10035 210785 Coriobacteriaceae family 890 0 1 6 84107 3090 Coriobacterium 9 genus 1 0 2 33870 0 33871 1 Coriobacterium glomerans species 3081 2 102106 0 1 202529 genus 23 Collinsella species Collinsella aerofaciens 202506 74426 1 0 4276 no rank 0 84113 1 1 1531429 0 species Coriobacteriaceae bacterium 68-1-3 4276 0 1 5 1497346 Thermoleophilia class 25 3006 1 0 588673 4 2981 Solirubrobacterales 66 order family 7 Conexibacteraceae 2915 320583 3 0 1 2908 53 genus Conexibacter 191494 2 1 0 191495 1 0 species Conexibacter woesei 2855 class 3 Acidimicrobiia 1756 7 84992 0 1 0 1 84993 6 1753 Acidimicrobiales order 47 3 84994 0 1 322 family 10 Acidimicrobiaceae 0 1 2 53634 312 Acidimicrobium genus 2 310 species Acidimicrobium ferrooxidans 53635 1 0 1384 family 2448023 2 0 1 0 682522 2 Ilumatobacter 7 genus 1384 species Ilumatobacter coccineus 1377 467094 1 0 683 no rank 0 4 1752188 0 1848754 1 148 Actinobacteria bacterium IMCC19121 species species Actinobacteria bacterium IMCC26103 150 1 1848756 0 0 1 1848255 155 Actinobacteria bacterium IMCC25003 species species Actinobacteria bacterium IMCC26077 230 1 1848755 0 2876 Rubrobacteria 103 class 1 0 6 84995 84 order Rubrobacterales 2773 5 84996 1 0 1 0 84997 4 Rubrobacteraceae 37 family 2689 2652 Rubrobacter 23 genus 1 0 3 42255 952 species Rubrobacter radiotolerans 1 42256 0 1677 species Rubrobacter xylanophilus 1 49319 0 6506 class Actinobacteria 1190860 1760 593 1 0 0 1643684 3 order 1776 1776 Nakamurellaceae 46 family 1 0 3 85031 2 53460 0 1 1730 genus 16 Nakamurella 1 53461 0 species Nakamurella multipartita 1714 11 order Frankiales 7080 7 85013 1 0 7069 253 family Frankiaceae 74712 6 1 0 Frankia genus 60 6816 0 1 1854 5 106370 1 0 species Frankia casuarinae 818 2632575 1 0 1390 no rank 1390 species Frankia sp. EAN1pec 298653 1 0 Frankia alni species 2592 0 1859 1 Frankia inefficax species 1956 0 298654 1 0 1 85007 162 158434 Corynebacteriales order 1165 Segniliparaceae family 12 547 0 1 316606 3 Segniliparus genus 9 535 0 1 2 286801 526 species Segniliparus rotundus 286802 1 0 Dietziaceae family 2 1641 0 1 85029 4 1 0 3 37914 1639 Dietzia 73 genus Dietzia timorensis species 726 0 1 499555 840 no rank 2617939 1 0 Dietzia sp. oral taxon 368 species 840 0 712270 1 56 1762 0 1 family 303 Mycobacteriaceae 60433 2285 genus 0 2 1073531 species Mycobacterium terrae 1166 1788 1 0 0 875328 1 1119 Mycobacterium sinense species 0 1 697025 genus 509 species Hoyosella subflava 509 1 639313 0 34 1763 1 0 2467 genus Mycobacterium 35422 482462 1 0 species Mycobacterium dioxanotrophicus 1202 species Mycobacterium kansasii 932 1 1768 0 0 1 261524 Mycobacterium liflandii species 986 species group 1410 0 1 2249310 722731 1 0 1410 species Mycobacterium shigaense no rank 14768 0 2642494 13 1208 Mycobacterium sp. PYR15 species 0 1 2051552 Mycobacterium sp. JLS species 1067 0 164757 1 0 1273687 1 Mycobacterium sp. VKM Ac-1817D species 1207 0 1 189918 Mycobacterium sp. KMS species 965 1920667 1 0 species Mycobacterium sp. WY10 1136 Mycobacterium sp. MCS species 949 0 1 164756 Mycobacterium sp. QIA-37 species 561 0 1 1561223 1 1545728 0 1322 species Mycobacterium sp. EPa45 species Mycobacterium sp. NRRL B-3805 1190 1570328 1 0 1 1879023 0 species Mycobacterium sp. djl-10 1913 0 1168287 1 Mycobacterium sp. MOTT36Y species 336 0 1 212767 1376 Mycobacterium sp. JS623 species 1682113 1 0 species Mycobacterium sp. YC-RL4 1538 1781 1 0 species Mycobacterium marinum 1247 0 8 120793 species group 7611 0 1 339268 1516 Mycobacterium colombiense species 1767 4 1 0 614 species Mycobacterium intracellulare 2300 0 1 1203599 375 Mycobacterium yongonense subspecies 866 subspecies Mycobacterium chimaera 222805 1 0 Mycobacterium indicus pranii subspecies 445 0 1 35617 0 1 1138383 461 Mycobacterium paraintracellulare species 0 701042 1 750 Mycobacterium marseillense species 0 1764 1 Mycobacterium avium species 2584 1 1769 0 species Mycobacterium leprae 171 species Mycobacterium ulcerans 879 1809 1 0 556 Mycobacterium haemophilum species 0 1 29311 3193 species group 77643 4 0 3 1773 1 0 991 species Mycobacterium tuberculosis 2496 33894 1 0 730 biotype Mycobacterium africanum biotype Mycobacterium bovis 775 1765 1 0 Mycobacterium canettii species 697 0 78331 1 1866885 13 0 17831 genus species Mycobacterium vanbaalenii 1318 110539 1 0 species Mycobacterium vaccae 1583 1 1810 0 1092 Mycobacterium gilvum species 0 1804 1 1772 1 0 1249 species Mycobacterium smegmatis species Mycobacterium fortuitum 1541 1 1766 0 0 1 1795 1190 Mycobacterium neoaurum species 1556 Mycobacterium aurum species 0 1 1791 0 1771 1 2174 Mycobacterium phlei species 0 1 758802 Mycobacterium litorale species 1227 0 36814 1 Mycobacterium rhodesiae species 985 species Mycobacterium thermoresistibile 1314 1797 1 0 1026 Mycobacterium chubuense species 0 1 1800 134601 1 0 species Mycobacterium goodii 1576 4083 genus 5 670516 0 species Mycobacterium immunogenum 710 1 83262 0 species Mycobacterium saopaulense 658 1578165 1 0 species Mycobacterium abscessus 1611 1 36809 0 729 Mycobacterium stephanolepidis species 0 1520670 1 1 1774 0 species Mycobacterium chelonae 375 37553 271 family Nocardiaceae 85025 31 1 0 23889 Rhodococcus 1449 genus 1 0 23 1827 0 192944 12 9783 no rank 366 Rhodococcus sp. BH4 species 0 1 1807790 1653479 1 0 species Rhodococcus sp. PBTS 2 656 0 1 1045808 Rhodococcus sp. YL-1 species 439 1653478 1 0 species Rhodococcus sp. PBTS 1 852 0 1727214 1 943 Rhodococcus sp. H-CA8f species 0 1723645 1 Rhodococcus sp. 008 species 445 1564114 1 0 805 species Rhodococcus sp. B7740 0 679318 1 644 Rhodococcus sp. WMMA185 species 1343 species Rhodococcus sp. WB1 1033922 1 0 species Rhodococcus sp. 2G 977 1 1570939 0 0 1 1805827 Rhodococcus sp. MTM3W5.2 species 1338 1 935199 0 species Rhodococcus sp. p52 975 0 103816 1 1157 Rhodococcus pyridinivorans species 1 191292 0 1331 species Rhodococcus aetherivorans 2770 Rhodococcus opacus species 0 1 37919 species Rhodococcus qingshengii 438 1 334542 0 1 1828 0 species Rhodococcus fascians 928 0 1 1829 Rhodococcus rhodochrous species 764 0 132919 1 Rhodococcus jostii species 1230 0 1 43767 1414 Rhodococcus hoagii species 1830 1 0 1510 species Rhodococcus ruber 1115 species Rhodococcus erythropolis 1833 1 0 13393 168 genus Nocardia 7 1817 1 0 0 37329 1 1899 Nocardia farcinica species 0 37326 1 Nocardia brasiliensis species 3356 1 135487 0 species Nocardia cyriacigeorgica 2331 1 37332 0 1486 species Nocardia seriolae Nocardia terpenica species 2196 0 455432 1 0 1 37330 1957 Nocardia nova species 12 family Tsukamurellaceae 4282 85028 4 1 0 0 1 2060 3 4270 Tsukamurella genus 44 species Tsukamurella paurometabola 1513 1 2061 0 species Tsukamurella tyrosinosolvens 2713 57704 1 0 45898 family 435 Corynebacteriaceae 1653 52 0 1 51 1716 1 0 1502 genus Corynebacterium 45463 Corynebacterium aurimucosum species 1127 0 1 169292 477 species Corynebacterium kroppenstedtii 161879 1 0 43770 1 0 species Corynebacterium striatum 2144 0 1 89154 Corynebacterium terpenotabidum species 755 0 1 571915 365 Corynebacterium mustelae species 278 Corynebacterium ulcerans species 0 1 65058 880 species Corynebacterium uterequi 1 1072256 0 0 1 1717 401 Corynebacterium diphtheriae species 0 1 258224 Corynebacterium resistens species 438 0 1 1719 Corynebacterium pseudotuberculosis species 361 2624378 2 0 1503 no rank 0 702967 1 877 Corynebacterium sp. NML98-0116 species 1487956 1 0 species Corynebacterium sp. ATCC 6931 626 0 203263 1 898 Corynebacterium aquilae species 1277 species Corynebacterium jeikeium 1 38289 0 684 species Corynebacterium argentoratense 1 42817 0 514 species Corynebacterium testudinoris 1 136857 0 1 161896 0 species Corynebacterium camporealensis 383 species Corynebacterium kutscheri 152 35755 1 0 575200 1 0 species Corynebacterium maris 822 0 349751 1 Corynebacterium marinum species 1232 1 401472 0 865 species Corynebacterium ureicelerivorans 1652495 1 0 species Corynebacterium crudilactis 444 1 92706 0 681 species [Brevibacterium] flavum 1404244 1 0 species Corynebacterium glyciniphilum 917 species Corynebacterium frankenforstense 1507 1230998 1 0 0 191610 1 984 Corynebacterium atypicum species 0 187491 1 1197 Corynebacterium glaucum species 1322 Corynebacterium glutamicum species 0 1718 1 Corynebacterium simulans species 1344 0 146827 1 0 1 1408191 469 Corynebacterium deserti species Corynebacterium efficiens species 796 0 1 152794 385 Corynebacterium casei species 0 160386 1 1231000 1 0 747 species Corynebacterium lactis 0 1 28028 Corynebacterium flavescens species 517 225326 1 0 species Corynebacterium halotolerans 1980 1 108486 0 species Corynebacterium falsenii 1463 0 1 161895 Corynebacterium phocae species 424 species Corynebacterium urealyticum 1585 1 43771 0 833 species Corynebacterium imitans 1 156978 0 species Corynebacterium variabile 1092 1727 1 0 2796 species Corynebacterium vitaeruminis 38305 1 0 381 species Corynebacterium stationis 1 1705 0 626 species Corynebacterium callunae 1721 1 0 1209 Corynebacterium singulare species 0 1 161899 1008 Corynebacterium doosanense species 0 1 1121358 1426 species Corynebacterium humireducens 1 1223514 0 1 1697 0 452 species Corynebacterium ammoniagenes 1 35757 0 264 species Corynebacterium cystitidis 0 1 1050174 348 Corynebacterium epidermidicanis species 0 191493 1 1208 Corynebacterium sphenisci species 1 0 9 85026 Gordoniaceae 24 family 6386 6362 Gordonia genus 93 0 1 2053 8 species Gordonia terrae 859 1 2055 0 863 species Gordonia iterans 1004901 1 0 810 Gordonia phthalatica species 0 1136941 1 1049 Gordonia polyisoprenivorans species 0 84595 1 0 2 2657482 1604 no rank 0 1 2059875 Gordonia sp. YC-JH1 species 722 337191 1 0 species Gordonia sp. KTR9 882 species Gordonia bronchialis 1084 2054 1 0 529 no rank 2 697024 0 529 Lawsonella 10 genus 1 0 1847725 2 1 1528099 0 species Lawsonella clevelandensis 519 Kineosporiales order 5 1819 0 1 622452 4 family 118 Kineosporiaceae 1814 3 83778 0 1 2 33981 0 1 genus 6 Kineococcus 1696 1690 Kineococcus radiotolerans species 0 131568 1 4 414714 1 0 3439 16 order Catenulisporales 3 414877 0 1 3423 family 15 Catenulisporaceae 0 1 2 414878 Catenulispora genus 45 3408 3363 species Catenulispora acidiphila 304895 1 0 1169 Actinopolysporales 1 order 1 0 4 622450 1168 family 14 Actinopolysporaceae 622451 3 0 1 1 0 2 1849 1154 Actinopolyspora 12 genus Actinopolyspora erythraea species 1142 0 1 414996 85014 3 0 2032 order 0 1 3 85034 2032 Glycomycetaceae family 44 0 1 283810 2 1988 Stackebrandtia genus 6 species Stackebrandtia nassauensis 1982 283811 1 0 2037 19 0 1 order 65 Actinomycetales 27063 18 2049 0 1 family 3115 Actinomycetaceae 26998 1094 Actinotignum genus 12 0 1 1653174 2 species Actinotignum schaalii 1082 59505 1 0 85 genus Mobiluncus 3024 2050 2 1 0 species Mobiluncus curtisii 2939 2051 1 0 genus 1484 1 2529408 0 1 52773 0 1484 species Actinomyces meyeri Actinomyces genus 400 14608 0 1 1654 9 1912795 1 0 255 species Actinomyces sp. VUL4_3 0 1 544580 1987 Actinomyces oris species 2501 species Actinomyces radicidentis 111015 1 0 1 1960083 0 species Actinomyces gaoshouyii 1113 1 1852377 0 3442 species Actinomyces pacaensis 3 2609248 0 no rank 4910 0 1851395 1 Actinomyces sp. Chiba101 species 1669 1454 species Actinomyces sp. oral taxon 897 1 2081702 0 1 712122 0 species Actinomyces sp. oral taxon 414 1787 genus 34 Trueperella 3389 2 1069494 0 1 3355 species Trueperella pyogenes 1661 1 0 284 genus 28263 1 0 0 28264 1 284 Arcanobacterium haemolyticum species 1 0 8 1643682 6156 Geodermatophilales 7 order 1 0 85030 7 6149 Geodermatophilaceae 102 family 1 0 2 88138 Modestobacter 161 genus 3045 2884 Modestobacter marinus species 0 1 477641 38501 2 0 1 999 genus 13 Blastococcus Blastococcus saxobsidens species 986 0 1 138336 2003 Geodermatophilus 43 genus 1 0 1860 2 1960 Geodermatophilus obscurus species 0 1861 1 18973 Streptosporangiales order 105 0 1 85012 16 7940 family 116 Nocardiopsaceae 7 83676 0 1 115 genus Nocardiopsis 6935 4 2013 1 0 1 280236 0 2213 species Nocardiopsis gilva 0 53437 1 1732 Nocardiopsis alba species 0 1 2014 Nocardiopsis dassonvillei species 2875 2 83677 0 1 889 genus 4 Thermobifida 0 2021 1 885 Thermobifida fusca species 2673 Thermomonosporaceae 19 family 1 0 2012 3 2654 Thermomonospora 100 genus 1 0 2019 2 2554 species Thermomonospora curvata 2020 1 0 1 0 5 2004 Streptosporangiaceae 116 family 8255 2000 2 1 0 2991 17 genus Streptosporangium 2974 Streptosporangium roseum species 0 1 2001 5148 genus 57 Nonomuraea 83681 2 0 1 0 2593643 1 5091 no rank 5091 species Nonomuraea sp. ATCC 55076 1909395 1 0 no rank 864 1643818 2 0 1 0 2 147067 864 Thermobispora 2 genus 1 2006 0 species Thermobispora bispora 862 52018 1 0 267 no rank Actinobacteria bacterium IMCC26256 species 267 0 1 1650658 Micromonosporales order 29 32427 0 1 85008 20 Micromonosporaceae 580 family 32398 1 0 28056 19 Verrucosispora genus 9 0 84593 1 genus 374 Actinoplanes 14768 6 1865 0 1 0 2626549 3 9189 no rank 649831 1 0 3119 species Actinoplanes sp. N902-109 1 134676 0 3035 species Actinoplanes sp. SE50/110 Actinoplanes sp. SE50 species 3035 0 1 2033844 2707 species Actinoplanes friuliensis 196914 1 0 1 1866 0 species Actinoplanes missouriensis 2498 0 1 168694 3 Salinispora genus 13 2701 0 168695 1 1216 Salinispora tropica species 1472 Salinispora arenicola species 0 168697 1 7665 Plantactinospora genus 128 0 1 673534 4 0 2631981 3 7537 no rank 0 1 2024580 2924 Plantactinospora sp. KBS50 species species Plantactinospora sp. BB1 2384 1 2071627 0 Plantactinospora sp. BC1 species 2229 0 2108470 1 Micromonospora 271 genus 6675 1 0 1873 4 2158 Micromonospora aurantiaca species 0 47850 1 1 2617518 0 2057 no rank 2057 species Micromonospora sp. L5 648999 1 0 0 1 1003110 2189 Verrucosispora maris species 82 85011 0 1 order 348 Streptomycetales 172127 81 2062 0 1 171779 family 1206 Streptomycetaceae genus 6774 Streptomyces 159793 75 1883 0 1 0 1969 1 2280 Streptomyces chartreusis species species Streptomyces albus 4301 1 1888 0 Streptomyces pratensis species 1379 0 1169025 1 Streptomyces sp. XZHG99 species 1340 0 1 2049881 3647 species group 2 629295 0 0 1482558 1 species subgroup 1684 1684 Streptomyces globisporus species 0 1908 1 species subgroup 1963 0 1482596 1 1 1911 0 1963 species Streptomyces griseus 2286 Streptomyces lincolnensis species 0 1 1915 0 1 1950 Streptomyces peucetius species 1513 1 553510 0 species Streptomyces gilvosporeus 1486 1957 species Streptomyces alfalfae 1642299 1 0 1477431 2 0 3905 species group species Streptomyces coelicolor 2032 1 1902 0 species Streptomyces sampsonii 1873 1 42239 0 species Streptomyces lividans 2140 1916 1 0 2251 species Streptomyces autolyticus 1 75293 0 0 1926 1 Streptomyces reticuli species 2159 2139 species Streptomyces xiamenensis 408015 1 0 Streptomyces alboflavus species 2368 0 1 67267 1901 1 0 species Streptomyces clavuligerus 1667 1 54571 0 species Streptomyces venezuelae 3606 68570 1 0 species Streptomyces albulus 1979 2305 Streptomyces vietnamensis species 0 1 362257 1643 Streptomyces niveus species 0 193462 1 species Streptomyces collinus 1772 42684 1 0 species Streptomyces sp. S10(2016) 1467 1 1783515 0 0 68192 1 Streptomyces cyaneogriseus species 1969 0 1616117 1 1532 Streptomyces formicae species 1 164348 0 species Streptomyces puniciscabiei 2027 species Streptomyces pluripotens 971 1 1355015 0 0 68280 1 1887 Streptomyces violaceusniger species 0 1 92644 Streptomyces malaysiensis species 1723 0 1935 1 1872 Streptomyces violaceoruber species 0 285473 1 1331 Streptomyces rubrolavendulae species 2582 Streptomyces scabiei species 0 1 1930 1916 species Streptomyces avermitilis 33903 1 0 0 68202 1 Streptomyces fulvissimus species 1923 4951 Streptomyces hygroscopicus species 0 1912 1 2394 Streptomyces cattleya species 0 1 29303 1548 Streptomyces lavendulae species 0 1 1914 species Streptomyces albireticuli 1669 1940 1 0 0 1889 1 1514 Streptomyces ambofaciens species Streptomyces lydicus species 5428 0 47763 1 0 1971 1 Streptomyces noursei species 1878 species Streptomyces pactum 4187 1 68249 0 1907 1 0 species Streptomyces glaucescens 1469 68214 1 0 species Streptomyces griseochromogenes 2066 2934 Streptomyces bingchenggensis species 0 379067 1 0 1 38300 Streptomyces pristinaespiralis species 1796 no rank 45977 24 2593676 0 1722 Streptomyces sp. Sge12 species 0 1 1972846 0 465541 1 Streptomyces sp. Mg1 species 1757 species Streptomyces sp. fd1-xmd 1867 1812480 1 0 1686 species Streptomyces sp. WAC00288 2094021 1 0 Streptomyces sp. 4F species 1577 0 1751294 1 1509 species Streptomyces sp. Tue 6075 1 1661694 0 0 1 1725411 Streptomyces sp. CdTB01 species 2827 0 1964449 1 Streptomyces sp. 3211 species 2200 2206 species Streptomyces sp. CMB-StM0423 2059884 1 0 1849967 1 0 1672 species Streptomyces sp. SAT1 1802 Streptomyces sp. TN58 species 0 1 234612 444103 1 0 2072 species Streptomyces sp. CNQ-509 1 1837283 0 species Streptomyces sp. S8 1803 0 1265601 1 1280 Streptomyces sp. PAMC 26508 species 0 1495638 1 Streptomyces sp. M56 species 2513 0 1 1262452 2044 Streptomyces sp. 769 species 1291 species Streptomyces sp. SirexAA-E 862751 1 0 0 1 1561022 2386 Streptomyces sp. CCM_MD2014 species species Streptomyces sp. P3 1772 1 2135430 0 0 1961713 1 1730 Streptomyces sp. MOE7 species 2713 Streptomyces sp. RTd22 species 0 1 1841249 0 1 1649184 2063 Streptomyces sp. CFMR 7 species 0 1 206662 1843 Streptomyces sp. FR-008 species Streptomyces sp. CLI2509 species 1642 0 1 1984801 146923 1 0 2243 species Streptomyces parvulus 0 1 1437453 Streptomyces leeuwenhoekii species 2159 0 1 1038928 1483 Streptomyces xinghaiensis species 0 1 5 2063 10780 Kitasatospora genus 194 no rank 3044 0 1 2633591 0 1 2018025 Kitasatospora sp. MMS16-BH015 species 3044 2650 species Kitasatospora setae 2066 1 0 2379 Kitasatospora albolonga species 0 68173 1 1 1894 0 2513 species Kitasatospora aureofaciens 62627 Pseudonocardiales order 216 0 1 42 85010 1 0 41 2070 62411 Pseudonocardiaceae 947 family 1835 2 0 1 genus 10 Saccharopolyspora 2453 0 1836 1 2443 Saccharopolyspora erythraea species 3 40566 0 1 genus 73 Actinosynnema 7242 Actinosynnema pretiosum species 3740 0 1 42197 3429 Actinosynnema mirum species 0 40567 1 0 1 2 2071 2630 Saccharothrix genus 5 1 103731 0 species Saccharothrix espanaensis 2625 7 1813 1 0 191 genus Amycolatopsis 18274 1 33910 0 3260 species Amycolatopsis mediterranei 0 1814 1 3074 Amycolatopsis methanolica species 2618356 2 0 4817 no rank Amycolatopsis sp. BJA-103 species 2548 0 1 1911175 0 1 1896961 2269 Amycolatopsis sp. AA4 species 0 208439 1 Amycolatopsis japonica species 2225 4707 species Amycolatopsis orientalis 31958 1 0 1704 Alloactinosynnema 3 genus 1 0 674734 2 1701 no rank 0 2636053 1 1 1653480 0 1701 species Alloactinosynnema sp. L-07 7287 Actinoalloteichus genus 167 0 1 6 65496 species Actinoalloteichus hoggarensis 1549 1 1470176 0 1 1612552 0 1440 species Actinoalloteichus sp. ADI127-7 1019 species Actinoalloteichus hymeniacidonis 340345 1 0 no rank 3112 0 2644606 2 1 1612551 0 species Actinoalloteichus sp. GBA129-24 1476 0 2072503 1 1636 Actinoalloteichus sp. AHMU CJ021 species Pseudonocardia genus 294 12282 0 1 8 1847 10621 no rank 0 2619320 6 0 1 1641402 Pseudonocardia sp. HH130629-09 species 1893 1690815 1 0 species Pseudonocardia sp. HH130630-07 1601 1 1688404 0 species Pseudonocardia sp. EC080610-09 1653 1535 species Pseudonocardia sp. EC080625-04 1096868 1 0 2140 Pseudonocardia sp. AL041005-10 species 0 445576 1 1096856 1 0 1799 species Pseudonocardia sp. EC080619-01 240495 1 0 1367 species Pseudonocardia dioxanivorans 2859 Kibdelosporangium 22 genus 1 0 2 2029 Kibdelosporangium phytohabitans species 2837 0 860235 1 43356 2 0 1 2670 genus 15 Kutzneria species Kutzneria albida 2655 1 43357 0 2 165301 1 0 13 genus Lentzea 2100 species Lentzea guizhouensis 2087 1 1586287 0 142577 2 0 1 1378 genus 3 Prauserella 1375 species Prauserella marina 1 530584 0 1 0 1851 2 585 Saccharomonospora 8 genus 577 species Saccharomonospora viridis 1852 1 0 0 1 85006 140 Micrococcales order 1382 119171 1 0 85023 44 38569 Microbacteriaceae 679 family 1377 genus 0 1 447237 1377 no rank 1 2626248 0 0 1 1795630 1377 Frondihabitans sp. PAMC 28766 species 1 0 69578 3 Cryobacterium 9 genus 2680 1312 Cryobacterium arcticum species 0 670052 1 1359 no rank 2649013 1 0 1359 Cryobacterium sp. LW097 species 0 1 1978566 2 1759331 0 1 genus 2 Cnuibacter 977 975 species Cnuibacter physcomitrellae 1 1619308 0 genus 864 0 1 337004 0 1 279828 Microcella alkaliphila species 864 1 1434032 0 404 genus 1 1159327 0 species Pontimonas salivibrio 404 2 1655488 0 no rank 357 clade 357 0 1655489 2 357 genus 529883 2 0 species Rhodoluna lacicola 167 1 529884 0 0 1 535712 190 Candidatus Rhodoluna planktonica species 33886 3 1 0 23 genus Rathayibacter 1264 0 1 145458 Rathayibacter toxicus species 242 Rathayibacter tritici species 999 0 33888 1 110932 2 1 0 2352 30 genus Leifsonia 0 1 1575 Leifsonia xyli species 2322 1573 6 1 0 4942 340 genus Clavibacter 28447 5 1 0 937 species Clavibacter michiganensis 4602 33014 1 0 subspecies Clavibacter insidiosus 808 939 subspecies Clavibacter nebraskensis 31963 1 0 1000 subspecies Clavibacter sepedonicus 1 31964 0 Clavibacter capsici subspecies 918 0 1 1874630 186 genus 1 Aurantimicrobium 1705353 2 0 1 0 1 708131 185 Aurantimicrobium minutum species 2034 4 0 1 3841 genus 41 Curtobacterium 0 2 257496 2924 no rank 1524 Curtobacterium sp. MR_MD2014 species 0 1 1561023 0 1905847 1 Curtobacterium sp. BH-2-1-1 species 1400 69373 1 0 876 species Curtobacterium pusillum genus 1865 33877 1 0 0 453304 1 Agromyces aureus species 1865 1609 genus 0 518733 1 Microterricola viridarii species 1609 0 412690 1 419 genus Microbacterium 15172 33882 14 1 0 972 Microbacterium chocolatum species 0 84292 1 1 300019 0 895 species Microbacterium paludicola Microbacterium testaceum species 1057 0 1 2033 9634 no rank 2609290 8 0 0 367477 1 Microbacterium sp. XT11 species 1028 1448 Microbacterium sp. str. 'China' species 0 1 2103230 903 species Microbacterium sp. TPU 3598 1 1938334 0 species Microbacterium sp. CGR1 949 1696072 1 0 0 1 1916917 935 Microbacterium sp. 1.5R species Microbacterium sp. No. 7 species 1479 0 1 1714373 1211 species Microbacterium sp. BH-3-3-3 1 1906742 0 1681 species Microbacterium sp. PAMC 28756 1795053 1 0 950 species Microbacterium aurum 36805 1 0 1 162426 0 1245 species Microbacterium hominis 361 family 0 85022 2 361 Jonesia 3 genus 1 0 43673 2 358 Jonesia denitrificans species 0 43674 1 3 85019 0 1 1886 family 37 Brevibacteriaceae 1696 2 0 1 genus 17 Brevibacterium 1849 1832 species Brevibacterium linens 1703 1 0 Sanguibacteraceae 3 family 1374 1 0 145360 3 1371 8 genus Sanguibacter 2 60919 1 0 0 60920 1 Sanguibacter keddieii species 1363 85017 9 1 0 70 family Promicromonosporaceae 8981 Isoptericola 38 genus 3310 1 0 3 254250 1 372663 0 species Isoptericola dokdonensis 1647 Isoptericola variabilis species 1625 0 1 139208 1 0 2 186188 Xylanimonas 11 genus 2484 2473 species Xylanimonas cellulosilytica 186189 1 0 Cellulosimicrobium 52 genus 3117 1 0 3 157920 2624466 1 0 no rank 1392 1 1980001 0 species Cellulosimicrobium sp. TH-20 1392 1710 1 0 species Cellulosimicrobium cellulans 1673 0 1 85020 10 9172 Dermabacteraceae family 86 genus 172 Brachybacterium 8098 43668 6 0 1 1 1331682 0 species Brachybacterium ginsengisoli 1550 1 2623841 0 1222 no rank Brachybacterium sp. P6-10-X1 species 1222 0 1903186 1 1 43669 0 2069 species Brachybacterium faecium 0 2017485 1 1363 Brachybacterium sp. VR2415 species 2017484 1 0 1722 species Brachybacterium sp. VM2412 459 genus 1 36739 0 0 1 1630135 Dermabacter vaginalis species 459 2 472568 1 0 1 genus Devriesea 529 472569 1 0 species Devriesea agamarum 528 3897 Dermacoccaceae family 37 0 1 7 145357 1 0 57495 2 Dermacoccus 14 genus 1257 0 1 1274 1243 Dermacoccus nishinomiyaensis species Kytococcus genus 71 1203 0 1 57499 2 0 1276 1 1132 Kytococcus sedentarius species 2 745364 1 0 34 genus Luteipulveratus 1400 0 1 571913 1366 Luteipulveratus mongoliensis species 1060 family 2 Beutenbergiaceae 3 125316 0 1 1 0 2 84756 Beutenbergia 44 genus 1058 Beutenbergia cavernae species 1014 0 1 84757 1 577468 0 no rank 79 79 genus 1 2038 0 2039 1 0 79 species Tropheryma whipplei 85021 9 1 0 74 family Intrasporangiaceae 5986 267408 2 1 0 22 genus Arsenicicoccus 1809 1787 no rank 0 2663846 1 species Arsenicicoccus sp. oral taxon 190 1787 1658671 1 0 9 genus Serinicoccus 1796 265976 2 1 0 0 1758689 1 Serinicoccus sp. JLT9 species 1787 Intrasporangium 10 genus 930 1 0 2 53357 920 Intrasporangium calvum species 0 53358 1 Janibacter genus 28 1377 0 1 53457 2 0 857417 1 1349 Janibacter indicus species family 1334 Micrococcaceae 39913 40 1268 0 1 1645 2 0 1 genus 2 Renibacterium 255 253 species Renibacterium salmoninarum 1646 1 0 1 0 2 1742992 Paenarthrobacter 2 genus 976 43663 1 0 species Paenarthrobacter aurescens 974 3861 genus 50 Pseudarthrobacter 4 1742993 0 1 1337 Pseudarthrobacter sulfonivorans species 0 121292 1 species Pseudarthrobacter chlorophenolicus 1603 1 85085 0 361575 1 0 871 species Pseudarthrobacter phenanthrenivorans Glutamicibacter genus 2 1555 0 1 2 1742989 0 1 256701 1553 Glutamicibacter arilaitensis species 1691 38 genus Micrococcus 2 1269 1 0 0 1 1270 Micrococcus luteus species 1653 3820 Kocuria genus 56 0 1 4 57493 1 72000 0 1634 species Kocuria rhizophila 446860 1 0 1170 species Kocuria flava Kocuria palustris species 960 0 1 71999 1642 29 genus Sinomonas 2 596707 1 0 Sinomonas atrocyanea species 1613 0 37927 1 2924 Rothia genus 3 0 1 3 32207 0 43675 1 2331 Rothia mucilaginosa species 0 1 2047 Rothia dentocariosa species 590 genus 443 Arthrobacter 20455 15 1663 0 1 656366 1 0 species Arthrobacter alpinus 2052 no rank 16111 12 235627 0 Arthrobacter sp. YN species 922 0 2020486 1 1494608 1 0 species Arthrobacter sp. PAMC 25486 1518 species Arthrobacter sp. PGP41 1241 1 2079227 0 1695 species Arthrobacter sp. LS16 1690248 1 0 0 1 1118963 698 Arthrobacter sp. Rue61a species 0 1806905 1 Arthrobacter sp. ZXY-2 species 1126 0 1849032 1 Arthrobacter sp. U41 species 1613 Arthrobacter sp. ERGS1:01 species 1421 0 1704044 1 1 290399 0 1249 species Arthrobacter sp. FB24 0 1771959 1 1322 Arthrobacter sp. ATCC 21022 species 0 1652545 1 1931 Arthrobacter sp. YC-RL1 species species Arthrobacter sp. QXT-31 1375 1 1357915 0 1 37928 0 species Arthrobacter crystallopoietes 1849 0 1 2 1868332 Neomicrococcus genus 15 1091 0 556325 1 1076 Neomicrococcus aestuarii species 1 2078575 0 genus 309 Arthrobacter sp. IHBB 11108 species 309 0 1 1618207 family 48 Cellulomonadaceae 5728 85016 6 0 1 genus 173 Cellulomonas 5680 5 1707 0 1 1248 no rank 0 1 2620175 1 2003551 0 1248 species Cellulomonas sp. PSBB021 1 1708 0 1252 species Cellulomonas fimi 0 1 11 1391 Cellulomonas gilvus species 1616 species Cellulomonas flavigena 1711 1 0 0 2 85018 family 783 2 1862 1 0 783 1 genus Dermatophilus species Dermatophilus congolensis 782 1863 1 0 368 order 11 Acidothermales 4 1643683 0 1 Acidothermaceae family 3 357 0 1 85032 3 0 1 28048 2 354 Acidothermus genus 1 Acidothermus cellulolyticus species 353 0 28049 1 26 85004 1 0 531369 158 order Bifidobacteriales 6322 family Bifidobacteriaceae 531211 25 31953 1 0 1 0 196082 2 Parascardovia 6 genus 1362 Parascardovia denticolens species 1356 0 78258 1 3857 1 genus Gardnerella 2701 2 1 0 species Gardnerella vaginalis 3856 2702 1 0 1382 genus Bifidobacterium 519129 19 1678 1 0 1 1680 0 10639 species Bifidobacterium adolescentis 0 1 158787 Bifidobacterium scardovii species 4766 1 33905 0 species Bifidobacterium thermophilum 2237 4004 species Bifidobacterium dentium 1 1689 0 1683 1 0 species Bifidobacterium angulatum 5454 0 1 28025 Bifidobacterium animalis species 1673 0 1694 1 Bifidobacterium pseudolongum species 2821 1 1685 0 species Bifidobacterium breve 33613 2 1686 0 1 70559 species 21474 Bifidobacterium catenulatum 0 630129 1 49085 Bifidobacterium kashiwanohense subspecies Bifidobacterium pseudocatenulatum species 174646 0 1 28026 Bifidobacterium bifidum species 20756 0 1681 1 1385 species Bifidobacterium asteroides 1 1684 0 1691 1 0 species Bifidobacterium indicum 878 1 638619 0 1210 species Bifidobacterium actinocoloniiforme Bifidobacterium coryneforme species 835 0 1 1687 35760 1 0 species Bifidobacterium choerinum 2512 179759 Bifidobacterium longum species 0 216816 1 0 1 196081 541 genus species Scardovia inopinata 541 1 78259 0 33 85009 0 1 35698 order 177 Propionibacteriales 19 31957 0 1 family 194 Propionibacteriaceae 22262 3 1743 0 1 genus 100 Propionibacterium 2298 0 1 2608905 no rank 824 824 species Propionibacterium sp. oral taxon 193 671223 1 0 0 1 1744 1374 Propionibacterium freudenreichii species 0 1 2 29404 1660 Microlunatus genus 32 1628 species Microlunatus phosphovorus 29405 1 0 0 1 1912216 4 3550 Cutibacterium genus 51 0 1747 1 Cutibacterium acnes species 872 1761 Cutibacterium avidum species 0 33010 1 species Cutibacterium granulosum 866 33011 1 0 2801844 1 0 genus 1469 1 1750 0 1469 species Pseudopropionibacterium propionicum 2550 genus 0 203133 1 no rank 2550 1 2633994 0 2550 species Propionimicrobium sp. Marseille-P3275 1 1871034 0 8213 Tessaracoccus genus 59 0 1 5 72763 1532 no rank 1 2635419 0 1909732 1 0 species Tessaracoccus sp. T2.5-30 1532 0 1610493 1 Tessaracoccus flavus species 1943 0 1 1332264 2687 Tessaracoccus aquimaris species 0 1 399497 1992 Tessaracoccus flavescens species 2328 10 genus Acidipropionibacterium 1912215 2 1 0 1 1748 0 2318 species Acidipropionibacterium acidipropionici 85015 13 0 1 13259 family 191 Nocardioidaceae 2044 2 1 0 19 genus Pimelobacter 1848 2045 1 0 1829 species Pimelobacter simplex 2 2040 1 0 54 genus Aeromicrobium 1353 1 2041 0 1299 species Aeromicrobium erythreum 1191 Micropruina 5 genus 1 0 2 116071 1186 Micropruina glycogenica species 0 75385 1 4 1839 0 1 6040 genus 52 Nocardioides 0 450734 1 Nocardioides dokdonensis species 1789 2615069 1 0 no rank 2213 0 1 196162 Nocardioides sp. JS614 species 2213 1986 species Nocardioides sp. 78 1 2045452 0 2 182639 0 1 2636 genus 47 Kribbella 0 1 182640 2589 Kribbella flavida species 2039638 12 0 1 1495 order 15 Candidatus Nanopelagicales 1480 family 2162846 11 0 Candidatus Nanopelagicus genus 1 266 0 1 2039639 4 0 1 1884916 Candidatus Nanopelagicus abundans species 119 1 1884634 0 species Candidatus Nanopelagicus limnes 62 Candidatus Nanopelagicus hibericus species 84 0 1884915 1 Candidatus Planktophila 7 genus 1214 1 0 622681 7 1 573600 0 139 species Candidatus Planktophila limnetica species Candidatus Planktophila versatilis 190 1884905 1 0 species Candidatus Planktophila sulfonica 281 1 1884904 0 269 species Candidatus Planktophila dulcis 1 1884914 0 1884907 1 0 species Candidatus Planktophila vernalis 169 1884913 1 0 species Candidatus Planktophila lacus 159 200795 43 0 1 21057 phylum 3 Chloroflexi 3944 Dehalococcoidia class 9 0 1 301297 8 2 order Dehalococcoidales 2246 4 1202465 1 0 0 1 3 1202464 2244 Dehalococcoidaceae family 2 2242 genus 61434 2 0 0 237581 1 284 no rank 0 1 1522671 Dehalococcoides sp. UCH007 species 284 species Dehalococcoides mccartyi 1958 1 61435 0 1 0 3 670486 1689 Dehalogenimonas 3 genus 0 1 1839801 889 Dehalogenimonas formicexedens species species Dehalogenimonas lykanthroporepellens 797 552810 1 0 475962 5 0 1 2084 class 9 Caldilineae 4 475963 0 1 order 9 Caldilineales 2075 family 2 Caldilineaceae 2066 3 475964 0 1 233191 2 0 1 genus 8 Caldilinea 2064 Caldilinea aerophila species 2056 0 1 133453 0 1 1382928 5 3080 Ardenticatenia class 17 3063 29 order Ardenticatenales 1382929 4 1 0 Ardenticatenaceae 25 family 3034 1 0 1382930 3 3009 Candidatus Promineofilum genus 13 0 1 1988031 2 species Candidatus Promineofilum breve 2996 1806508 1 0 0 1 8 189775 Thermomicrobia class 32 1725 3 189776 0 1 466 order 7 Thermomicrobiales family 459 189777 2 0 0 1 499 2 459 Thermomicrobium genus 1 0 1 500 458 Thermomicrobium roseum species 85000 4 0 subclass 1227 Sphaerobacterales order 64 1227 0 1 85001 4 1163 suborder 255728 3 0 85002 3 0 1 1163 family 17 Sphaerobacteraceae 1 0 2056 2 1146 Sphaerobacter 47 genus 1099 Sphaerobacter thermophilus species 0 1 2057 10 32061 0 1 4440 class 14 Chloroflexia 0 1 32064 9 4426 Chloroflexales order 57 1508595 3 0 2550 suborder 0 1 3 1508635 Roseiflexaceae family 10 2550 genus 2540 2 120961 0 2609473 1 0 no rank 907 0 1 357808 Roseiflexus sp. RS-1 species 907 species Roseiflexus castenholzii 1633 120962 1 0 1508594 5 0 suborder 1819 0 1 5 1106 Chloroflexaceae family 8 1819 4 1107 0 1 genus 104 Chloroflexus 1811 1 152260 0 species Chloroflexus aggregans 763 0 1 2 1108 944 Chloroflexus aurantiacus species 472 0 480224 1 472 Chloroflexus sp. Y-400-fl strain 6 292625 1 0 6 class Anaerolineae 5781 5775 Anaerolineales 8 order 1 0 292629 5 Anaerolineaceae 26 family 5767 1 0 292628 4 1324991 1 0 no rank 4119 1 1889813 0 species Anaerolineaceae bacterium oral taxon 439 4119 1 2019482 0 691 genus 691 species Brevefilum fermentans 1986204 1 0 0 233189 1 931 genus species Anaerolinea thermophila 931 1 167964 0 1859062 2 0 no rank 500 1 0 262406 2 500 Thermobaculum 83 genus 166501 1 0 species Thermobaculum terrenum 417 46739 clade 0 146 1798711 46739 5 phylum Cyanobacteria 146 1117 1 0 1 1983111 0 205 no rank 205 cyanobacterium endosymbiont of Epithemia turgida species 0 1 718217 1 0 7 52604 1145 Pleurocapsales 1 order 1890500 2 1 0 502 15 family Hyellaceae 487 genus 0 44474 1 species Pleurocapsa minor 487 54308 1 0 4 family Dermocarpellaceae 642 4 1890498 1 0 1 0 102115 3 Stanieria 2 genus 638 0 2642663 1 no rank 328 0 1807358 1 328 Stanieria sp. NIES-3757 species 308 species Stanieria cyanosphaera 102116 1 0 subclass 9481 1301283 43 0 4599 Oscillatoriales order 13 0 1 1150 20 10 family Gomontiellaceae 455 2 1892255 1 0 genus 445 1 241421 0 241425 1 0 species Crinalium epipsammum 445 1892251 3 0 1 929 family 2 Coleofasciculaceae 2 63132 1 0 927 4 genus Geitlerinema 923 no rank 0 2648775 1 0 1 1173025 Geitlerinema sp. PCC 7407 species 923 0 1 3 1892249 Cyanothecaceae family 9 421 2 43988 0 1 genus 19 Cyanothece 412 2649277 1 0 no rank 393 393 Cyanothece sp. PCC 7425 species 0 1 395961 1892252 5 1 0 1229 4 family Microcoleaceae Trichodesmium genus 2 794 0 1 2 1205 1206 1 0 792 species Trichodesmium erythraeum 44471 2 1 0 2 genus Microcoleus 431 1 2642155 0 429 no rank 1 1173027 0 429 species Microcoleus sp. PCC 7113 Oscillatoriaceae 6 family 1552 1 0 6 1892254 632 Moorea genus 2 0 1 2 1155738 1 1155739 0 630 species Moorea producens 27 genus Oscillatoria 914 3 1158 1 0 1 118323 0 245 species Oscillatoria acuminata 642 Oscillatoria nigro-viridis species 0 1 482564 0 1 1118 23 Chroococcales order 17 4882 874 family 5 Microcystaceae 4 1890449 0 1 0 1 1125 3 Microcystis genus 7 869 0 1 1126 Microcystis aeruginosa species 634 228 no rank 0 1 2643300 1967666 1 0 species Microcystis sp. MC19 228 520 Cyanobacteriaceae family 1 0 1 2 1890452 0 1 102234 519 genus 0 379064 1 519 Cyanobacterium aponinum species 9 1890450 1 0 5 family Aphanothecaceae 1959 0 2 2546365 560 genus 2546366 2 0 species 560 1 41431 0 strain Cyanothece sp. PCC 8801 312 248 Cyanothece sp. PCC 8802 strain 0 1 395962 0 2 92682 241 no rank 241 10 genus Halothece 76023 2 1 0 no rank 231 0 2632878 1 1 65093 0 species Halothece sp. PCC 7418 231 0 1 263510 genus 272 2546360 1 0 species 272 272 strain Cyanothece sp. ATCC 51142 43989 1 0 genus 125 0 1453359 1 125 species Candidatus Atelocyanobacterium thalassa 713887 1 0 756 genus 2 28070 0 0 2546359 1 390 species strain Cyanothece sp. PCC 7822 390 497965 1 0 2546356 1 0 366 species 65393 1 0 strain Cyanothece sp. PCC 7424 366 1512 Chroococcaceae 6 family 1 0 7 1890464 102231 2 1 0 307 2 genus Gloeocapsa 0 1 2623012 305 no rank Gloeocapsa sp. PCC 7428 species 305 0 1173026 1 1 268175 0 350 genus no rank 350 2648896 1 0 0 2005460 1 350 Chondrocystis sp. NIES-4102 species Geminocystis genus 6 849 0 1 669357 3 0 2 2625037 no rank 843 0 1 1615909 Geminocystis sp. NIES-3708 species 428 1 1617448 0 415 species Geminocystis sp. NIES-3709 0 1 307596 6 Gloeobacteria class 8 3247 5 307595 1 0 33 order Gloeobacterales 3239 1890422 4 1 0 21 family Gloeobacteraceae 3206 1 0 3 33071 Gloeobacter 59 genus 3185 2011 Gloeobacter violaceus species 0 1 33072 species Gloeobacter kilaueensis 1115 1 1416614 0 1890424 54 1 0 160 order Synechococcales 23458 2188 Leptolyngbyaceae family 16 0 1 6 1890438 1 0 5 47251 2172 Leptolyngbya 9 genus 0 3 2650499 1789 no rank 0 1 1752064 Leptolyngbya sp. NIES-3755 species 398 348 species Leptolyngbya sp. PCC 7376 1 111781 0 0 1080068 1 1043 Leptolyngbya sp. O-77 species 1184 1 0 374 species Leptolyngbya boryana 244 family 2 1890429 0 244 Acaryochloris 1 genus 1 0 155977 2 243 Acaryochloris marina species 0 155978 1 2 2303730 0 450 family 0 1 2 170610 Halomicronema genus 1 450 1209493 1 0 449 species Halomicronema hongdechloris 17658 Synechococcaceae 52 family 1 0 33 1890426 167375 3 1 0 170 genus Cyanobium 4323 1 2627006 0 no rank 2001 1851505 1 0 species Cyanobium sp. NIES-981 2001 1 59930 0 2152 species Cyanobium gracile 146785 1 0 genus 365 species Thermosynechococcus elongatus 365 1 146786 0 1129 26 0 1 12685 genus 190 Synechococcus 33070 1 0 species Synechococcus lividus 253 361 species Synechococcus elongatus 1 32046 0 2626047 23 0 11881 no rank species Synechococcus sp. PCC 6312 164 195253 1 0 species Synechococcus sp. PCC 7002 219 1 32049 0 173 species Synechococcus sp. PCC 8807 195248 1 0 1 64471 0 254 species Synechococcus sp. CC9311 species Synechococcus sp. SynAce01 689 1 1916956 0 1 374982 0 246 species Synechococcus sp. PCC 73109 1350461 1 0 species Synechococcus sp. UTEX 2973 489 733 Synechococcus sp. WH 8102 species 0 84588 1 Synechococcus sp. KORDI-100 species 659 0 1280380 1 species Synechococcus sp. WH 8109 655 166314 1 0 316278 1 0 species Synechococcus sp. RCC307 692 Synechococcus sp. PCC 7502 species 185 0 1173263 1 0 1827144 1 Synechococcus sp. NIES-970 species 225 1 585425 0 776 species Synechococcus sp. KORDI-52 321327 1 0 species Synechococcus sp. JA-3-3Ab 1404 0 1 585423 798 Synechococcus sp. KORDI-49 species 195498 1 0 140 species Synechococcus sp. PCC 7117 Synechococcus sp. JA-2-3B'a(2-13) species 796 0 1 321332 0 1 32051 830 Synechococcus sp. WH 7803 species 139 species Synechococcus sp. CC9902 316279 1 0 689 species Synechococcus sp. WH 8103 29410 1 0 0 374981 1 Synechococcus sp. PCC 7003 species 279 0 110662 1 Synechococcus sp. CC9605 species 647 2 13034 1 0 233 10 genus Dactylococcopsis species Dactylococcopsis salina 223 292566 1 0 family 694 0 1890428 4 1 0 4 1142 694 Synechocystis 16 genus 0 2640012 3 no rank 678 species Synechocystis sp. PCC 6714 228 1147 1 0 225 species Synechocystis sp. IPPAS B-1465 1 2116702 0 225 species Synechocystis sp. PCC 6803 1148 1 0 2 1890436 0 family 348 10 genus Pseudanabaena 348 1152 2 1 0 2593292 1 0 no rank 338 338 Pseudanabaena sp. PCC 7367 species 0 1 82654 family 1716 1213 4 0 genus 7 Prochlorococcus 1716 1218 4 0 1 0 2627481 2 no rank 453 1 1501268 0 173 species Prochlorococcus sp. MIT 0604 Prochlorococcus sp. MIT 0801 species 280 0 1501269 1 1256 species Prochlorococcus marinus 1219 1 0 8987 order 26 Nostocales 32 1161 0 1 1892263 2 0 family 265 1 0 1190 2 Fischerella 3 genus 265 0 494603 1 262 no rank 0 1752063 1 262 Fischerella sp. NIES-3754 species 1 0 18 1162 Nostocaceae 27 family 5225 0 1 264688 3 759 Trichormus genus 1 Trichormus azollae species 468 0 1164 1 1 264691 0 species Trichormus variabilis 290 Nostoc genus 26 3208 0 1 1177 10 species Nostoc flagelliforme 338 1306274 1 0 2440 no rank 7 2593658 0 0 1751286 1 Nostoc sp. NIES-3756 species 301 0 1 317936 406 Nostoc sp. PCC 7107 species 338 Nostoc sp. PCC 7120 species 0 1 103690 0 1 1869241 345 Nostoc sp. CENA543 species 380 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 1 0 0 28072 1 300 Nostoc sp. PCC 7524 species 0 1261031 1 370 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 1 272131 0 species Nostoc punctiforme 404 genus 1 Anabaena 1231 1163 4 0 1 794 no rank 2 2619674 0 349 Anabaena sp. 90 species 0 1 46234 0 1 1647413 445 Anabaena sp. WA102 species Anabaena cylindrica species 436 0 1165 1 586 family 4 Rivulariaceae 2 1185 0 1 0 373984 1 genus 582 582 no rank 0 1 2676603 373994 1 0 582 species Rivularia sp. PCC 7116 2538 family 2661849 8 0 1186 8 1 0 2538 23 genus Calothrix species Calothrix parietina 314 1 32054 0 0 6 2619626 no rank 2201 0 1 99598 342 Calothrix sp. PCC 7507 species 612 Calothrix sp. NIES-4071 species 0 2005469 1 2005461 1 0 344 species Calothrix sp. NIES-4101 367 species Calothrix sp. 336/3 1337936 1 0 Calothrix sp. NIES-3974 species 239 0 1 2005462 0 1 1954171 297 Calothrix sp. NIES-2098 species 1 1219117 0 no rank 347 347 Nostocales cyanobacterium HT-58-2 species 0 1 1940762 order 211 1890505 2 0 family 211 0 1890528 2 Chroococcidiopsis genus 7 211 0 1 2 54298 1 54299 0 species Chroococcidiopsis thermalis 204 5 67819 0 phylum 751 class 2 Fimbriimonadia 751 5 1663419 0 1 0 1 4 1663425 749 Fimbriimonadales order 3 family 2 Fimbriimonadaceae 746 1663426 3 0 1 1005038 2 0 1 744 genus 4 Fimbriimonas 740 Fimbriimonas ginsengisoli species 0 1 1005039 Acidobacteria phylum 4 9711 0 1 21 57723 8664 Acidobacteriia class 38 0 1 204432 17 order 15 Solibacterales 1582 4 332160 0 1 1 0 332161 3 1567 Solibacteraceae 46 family 0 1 332162 2 1521 Candidatus Solibacter genus 26 0 1 332163 Candidatus Solibacter usitatus species 1495 204433 12 1 0 89 order Acidobacteriales 7044 0 1 11 204434 6955 Acidobacteriaceae family 52 0 1 940557 3 2380 Granulicella genus 62 1133 species Granulicella tundricola 940615 1 0 0 940614 1 1185 Granulicella mallensis species Terriglobus 7 genus 2228 1 0 392733 3 392734 1 0 1155 species Terriglobus roseus 1066 Terriglobus saanensis species 0 870903 1 genus 13 Candidatus Koribacter 1008 2 658061 0 1 Candidatus Koribacter versatilis species 995 0 1 658062 0 1 2 33973 Acidobacterium genus 82 1287 1205 species Acidobacterium capsulatum 33075 1 0 0 1 3 1562566 Blastocatellia class 4 1043 1039 genus 6 Chloracidobacterium 2 458032 0 1 0 458033 1 1033 Chloracidobacterium thermophilum species 9 200940 0 phylum 805 67799 9 1 0 805 1 class Thermodesulfobacteria 1 0 188710 8 804 Thermodesulfobacteriales 2 order Thermodesulfobacteriaceae 3 family 802 1 0 188711 7 444090 1 0 genus 118 Caldimicrobium thiodismutans species 118 0 1 1653476 326 genus 2 Thermodesulfobacterium 1740 3 0 1 105 Thermodesulfobacterium commune species 0 1741 1 1 1295609 0 219 species Thermodesulfobacterium geofontis 1 genus Thermodesulfatator 355 241192 2 1 0 Thermodesulfatator indicus species 354 0 171695 1 0 200783 25 3092 phylum 1 0 25 187857 3092 Aquificae 4 class 2427 3 order Aquificales 32069 18 1 0 0 1 64898 11 Aquificaceae family 4 1358 834 genus 31 Hydrogenobaculum 6 168657 0 1 803 no rank 5 2622382 0 1 547145 0 species Hydrogenobaculum sp. SHO 183 183 species Hydrogenobaculum sp. SN 547146 1 0 species Hydrogenobaculum sp. HO 183 1 547144 0 0 380749 1 71 Hydrogenobaculum sp. Y04AAS1 species 0 547143 1 Hydrogenobaculum sp. 3684 species 183 0 75905 2 genus 176 0 75906 1 112 Thermocrinis ruber species Thermocrinis albus species 64 0 1 136094 genus 221 939 1 0 940 1 0 species Hydrogenobacter thermophilus 221 123 genus 0 2713 1 123 Aquifex aeolicus species 0 1 63363 755 8 family Hydrogenothermaceae 224027 5 1 0 0 182899 1 250 genus 309805 1 0 250 species Persephonella marina genus 5 Sulfurihydrogenibium 497 212790 3 0 1 species Sulfurihydrogenibium azorense 193 309806 1 0 0 2619248 1 299 no rank 0 1 436114 299 Sulfurihydrogenibium sp. YO3AOP1 species no rank 311 1 90150 0 0 1 412592 genus 311 311 species Thermosulfidibacter takaii 412593 1 0 1485951 6 0 1 order 9 Desulfurobacteriales 661 558314 5 1 0 4 family Desulfurobacteriaceae 652 171868 2 0 1 genus 1 Thermovibrio 352 0 228745 1 Thermovibrio ammonificans species 351 2 64159 0 1 genus 1 Desulfurobacterium 296 295 species Desulfurobacterium thermolithotrophum 64160 1 0 9096 phylum 0 44 200918 Thermotogae 9 class 9096 1 0 188708 44 1 0 28 2419 6430 Thermotogales 10 order 1643950 10 1 0 2432 15 family Fervidobacteriaceae 0 1 2420 5 1694 Thermosipho genus 2 364 species Thermosipho africanus 2421 1 0 0 2 2676525 764 no rank species Thermosipho sp. 1070 380 1437364 1 0 1 1462747 0 384 species Thermosipho sp. 1063 564 Thermosipho melanesiensis species 0 46541 1 0 1 2422 4 Fervidobacterium genus 1 723 0 93466 1 Fervidobacterium pennivorans species 301 0 1 2423 224 Fervidobacterium islandicum species Fervidobacterium nodosum species 197 0 1 2424 3988 family 2 Thermotogaceae 188709 17 0 1 2335 11 0 1 genus 168 Thermotoga 2702 0 2336 1 Thermotoga maritima species 184 976 no rank 2631113 4 0 Thermotoga sp. RQ2 species 222 0 126740 1 298 species Thermotoga sp. RQ7 126738 1 0 246 species Thermotoga sp. Cell2 1 1157947 0 1 1157948 0 210 species Thermotoga sp. 2812B 0 1 1508420 Thermotoga profunda species 245 0 2337 1 Thermotoga neapolitana species 312 286 species Thermotoga petrophila 1 93929 0 0 1 93930 Thermotoga naphthophila species 309 222 species Thermotoga caldifontis 1508419 1 0 1643951 5 1 0 1284 87 genus Pseudothermotoga Pseudothermotoga elfii species 309 0 1 38322 0 1 177758 Pseudothermotoga lettingae species 321 0 1 57487 286 Pseudothermotoga hypogea species 119394 1 0 281 species Pseudothermotoga thermarum 7 1643946 1 0 1 order Kosmotogales 852 Kosmotogaceae family 12 851 0 1 6 1643948 Mesotoga genus 6 386 0 1 2 1184396 Mesotoga prima species 380 0 1 1184387 0 1 3 651456 453 Kosmotoga genus 2 1 1330330 0 species Kosmotoga pacifica 275 0 651457 1 Kosmotoga olearia species 176 1805 1 order Petrotogales 1643947 8 1 0 7 1643949 0 1804 family 1511648 2 1 0 1 genus Defluviitoga 371 1 1006576 0 370 species Defluviitoga tunisiensis 211 genus 10 Petrotoga 28236 2 0 1 species Petrotoga mobilis 201 1 69499 0 160798 3 1 0 29 genus Marinitoga 1222 0 149715 1 579 Marinitoga piezophila species no rank 614 2640159 1 0 Marinitoga sp. 1137 species 614 0 1 1545835 0 200938 4 phylum 1244 118001 4 0 class 1244 0 1 4 189769 1244 Chrysiogenales order 133 1 0 3 189770 1111 Chrysiogenaceae 6 family 0 1 393029 2 1105 Desulfurispirillum genus 11 species Desulfurispirillum indicum 1094 936456 1 0 1657 phylum 0 200930 8 68337 8 1 0 3 class Deferribacteres 1657 order 5 Deferribacterales 1654 191393 7 0 1 Deferribacteraceae 9 family 1649 1 0 6 191394 0 117999 1 genus 399 399 species Denitrovibrio acetiphilus 118000 1 0 545865 1 0 341 genus 477976 1 0 species Calditerrivibrio nitroreducens 341 genus 495 1 2351 0 495 species Flexistipes sinusarabici 1 2352 0 0 1 2 53572 405 Deferribacter genus 1 197162 1 0 species Deferribacter desulfuricans 404 0 1 1224 1996 Proteobacteria phylum 722 1923330 17 class Oligoflexia 2564 1553900 8 1 0 order 788 0 2 2024979 family 392 0 1 1652132 genus 392 0 1 1652133 Halobacteriovorax marinus species 392 0 1 97084 396 family 263369 1 0 396 genus 0 146784 1 species Bacteriovorax stolpii 396 1 960 0 1 0 213481 5 1759 Bdellovibrionales 70 order 1689 9 family Bdellovibrionaceae 4 213483 1 0 958 3 1 0 1680 9 genus Bdellovibrio 1416 Bdellovibrio bacteriovorus species 0 959 1 0 453816 1 255 Bdellovibrio exovorus species Zetaproteobacteria class 6 1427 0 1 580370 6 Mariprofundales order 14 1421 0 1 580371 5 1407 3 family Mariprofundaceae 4 580372 1 0 3 377315 1 0 17 genus Mariprofundus 1404 species Mariprofundus aestuarium 668 1921086 1 0 species Mariprofundus ferrinatatus 719 1921087 1 0 1218 class Gammaproteobacteria 804700 879 1236 1 0 order 669 0 5 1240482 669 family 7 Orbaceae 5 1240483 0 1 349 Gilliamella 1 genus 1 0 2 1193503 348 species Gilliamella apicola 1196095 1 0 313 Frischella 1 genus 1 0 2 1335631 species Frischella perrara 312 1267021 1 0 0 1 32 135625 12255 Pasteurellales order 2 1 0 31 712 Pasteurellaceae 1129 family 12253 Aggregatibacter 6 genus 876 1 0 416916 3 732 1 0 species Aggregatibacter aphrophilus 391 0 1 714 479 Aggregatibacter actinomycetemcomitans species 2 697331 1 0 2 genus Basfia 470 157673 1 0 species [Mannheimia] succiniciproducens 468 0 1 2 2094023 482 Glaesserella genus 6 species Glaesserella parasuis 476 1 738 0 0 1 214906 genus 367 0 1 731 367 Histophilus somni species 6 724 1 0 15 genus Haemophilus 2021 0 1 727 953 Haemophilus influenzae species 213 species Haemophilus pittmaniae 249188 1 0 [Haemophilus] ducreyi species 361 0 730 1 0 1 729 229 Haemophilus parainfluenzae species 0 1 2609962 250 no rank 712310 1 0 250 species Haemophilus sp. oral taxon 036 511 Gallibacterium 1 genus 1 0 155493 2 Gallibacterium anatis species 510 0 1 750 1826 Bibersteinia genus 4 0 1 476528 2 0 1 47735 Bibersteinia trehalosi species 1822 Mannheimia 15 genus 1720 1 0 75984 4 0 1 2645054 no rank 290 species Mannheimia sp. USDA-ARS-USMARC-1261 290 1 1432056 0 Mannheimia varigena species 482 0 85404 1 933 species Mannheimia haemolytica 75985 1 0 1353 5 genus Pasteurella 745 3 1 0 species Pasteurella dagmatis 288 1 754 0 Pasteurella multocida species 1060 0 1 747 5 713 0 1 genus 29 Actinobacillus 1498 0 1 715 353 Actinobacillus pleuropneumoniae species 0 1 718 309 Actinobacillus equuli species Actinobacillus succinogenes species 484 0 1 67854 0 716 1 323 Actinobacillus suis species 72273 31 1 0 6494 4 order Thiotrichales 3533 10 family Francisellaceae 34064 14 1 0 genus 118 0 1 1869285 594679 1 0 118 species Allofrancisella guangzhouensis genus 40 Francisella 3405 262 12 0 1 381 species Francisella noatunensis 1 657445 0 0 622488 1 Francisella hispaniensis species 190 237 species Francisella sp. CA97-1460 1 1542390 0 0 2610885 2 no rank 431 0 475375 1 Francisella sp. MA067296 species 154 1 1547445 0 species Francisella sp. FSC1006 277 0 573570 1 Francisella sp. TX077310 species 260 954 1 0 103 species Francisella persica 1 573569 0 137 species Francisella sp. TX077308 685 species Francisella philomiragia 28110 1 0 1 263 0 species Francisella tularensis 774 species Francisella halioticida 167 1 549298 0 1 0 135616 13 2418 Piscirickettsiaceae 22 family 0 1 3 40222 803 Methylophaga genus 1 1 754477 0 species Methylophaga frappieri 202 754476 1 0 species Methylophaga nitratireducenticrescens 600 1237 1 0 244 genus 1 1238 0 species Piscirickettsia salmonis 244 2 933 0 genus 295 180 Thiomicrospira cyclica species 0 147268 1 1 92245 0 species Thiomicrospira aerophila 115 4 34067 1 0 2 genus Cycloclasticus 869 1 1329899 0 species Cycloclasticus zancles 248 0 2 2621467 619 no rank 1 728003 0 species Cycloclasticus sp. PY97N 370 249 species Cycloclasticus sp. P1 1 385025 0 0 1 28884 2 185 Hydrogenovibrio genus 7 Hydrogenovibrio crunogenus species 178 0 39765 1 family 539 3 135617 0 4 genus Thioploca 305 40751 2 1 0 0 1 40754 301 Thioploca ingrica species 0 1021 1 234 genus Beggiatoa leptomitoformis species 234 0 1 288004 27 order Nevskiales 827 1775403 4 1 0 1 568386 0 13 family Sinobacteraceae 0 2689614 2 787 family 0 1 2 469322 787 Steroidobacter genus 7 1 465721 0 species Steroidobacter denitrificans 780 order 255 0 135615 3 0 1 868 3 255 Cardiobacteriaceae family 1 1 0 869 2 Dichelobacter 1 genus 254 870 1 0 253 species Dichelobacter nodosus 243 91347 0 1 order 1461 Enterobacterales 387351 1903416 3 1 0 4 family Budviciaceae 352 2 82984 1 0 348 3 genus Pragia 1 82985 0 species Pragia fontium 345 1 0 22 1903414 7389 Morganellaceae 27 family 1980 Morganella 46 genus 1 0 2 581 1934 Morganella morganii species 0 1 582 80 Arsenophonus 2 genus 1 0 2 637 634113 1 0 78 species Arsenophonus symbiont of Lipoptena fortisetosa 1254 genus 5 Providencia 4 586 0 1 1 587 0 species Providencia rettgeri 241 126385 1 0 221 species Providencia alcalifaciens 787 species Providencia stuartii 1 588 0 1 0 626 6 1757 Xenorhabdus 10 genus 1 628 0 341 species Xenorhabdus nematophila 303 species Xenorhabdus hominickii 1 351679 0 515 Xenorhabdus bovienii species 0 40576 1 Xenorhabdus doucetiae species 315 0 351671 1 species Xenorhabdus poinarii 273 40577 1 0 4 29487 1 0 962 28 genus Photorhabdus 288 species Photorhabdus luminescens 1 29488 0 291112 1 0 414 species Photorhabdus asymbiotica 232 species Photorhabdus temperata 574560 1 0 1329 88 genus Proteus 3 583 1 0 0 584 1 Proteus mirabilis species 899 1 585 0 342 species Proteus vulgaris 18468 71 family Erwiniaceae 1903409 27 1 0 13 genus Tatumella 343 82986 2 1 0 Tatumella citrea species 330 0 53336 1 174 genus 1 51228 0 Wigglesworthia glossinidia species 174 0 51229 1 202 genus Erwinia 4453 8 551 1 0 0 1 1619313 Erwinia gerundensis species 843 species Candidatus Erwinia sp. ErCipseudotaxifoliae 91 1 1922217 0 1 338565 0 732 species Erwinia tasmaniensis 570 no rank 0 1 2622719 570 species Erwinia sp. Ejp617 215689 1 0 1 79967 0 species Erwinia pyrifoliae 608 952 Erwinia billingiae species 0 1 182337 1 552 0 455 species Erwinia amylovora 0 1 11 53335 Pantoea genus 480 9822 0 553 1 Pantoea ananatis species 1123 1076550 1 0 species Pantoea rwandensis 705 0 470934 1 1730 Pantoea vagans species 1267 species group 0 1654067 1 0 549 1 Pantoea agglomerans species 1267 0 1891675 1 829 Pantoea alhagi species 0 2630326 3 3155 no rank 0 1484158 1 727 Pantoea sp. PSNIH1 species 0 1 1484157 Pantoea sp. PSNIH2 species 1447 0 1 592316 Pantoea sp. At-9b species 981 1 66269 0 425 species Pantoea stewartii species Candidatus Pantoea carbekii 108 1235990 1 0 2619 genus 2100764 2 0 species Pantoea calida 1466 665913 1 0 0 665914 1 Pantoea gaviniae species 1153 2 genus Buchnera 986 32199 2 1 0 984 species Buchnera aphidicola 1 9 0 1 0 39 1903411 42907 Yersiniaceae 177 family 758 genus 36 Chania 2 1745211 0 1 Chania multitudinisentens species 722 0 1639108 1 0 1 34037 4 2029 Rahnella genus 40 0 34038 1 Rahnella aquatilis species 796 1193 no rank 2635087 2 0 1 741091 0 717 species Rahnella sp. Y9602 0 1805933 1 476 Rouxiella sp. ERMR1:05 species 31752 Serratia genus 1314 0 1 16 613 species Serratia proteamaculans 940 1 28151 0 47917 1 0 1746 species Serratia fonticola 1 61651 0 1152 species Serratia ficaria 0 614 1 1241 Serratia liquefaciens species 1209 species Serratia rubidaea 61652 1 0 8425 Serratia plymuthica species 0 1 82996 Serratia marcescens species 6310 0 1 615 0 2647522 8 no rank 9415 0 1758196 1 1261 Serratia sp. SSNIH1 species 0 768490 1 1083 Serratia sp. AS12 species 1327989 1 0 1236 species Serratia sp. FS14 1477 Serratia sp. SCBI species 0 488142 1 1402 species Serratia sp. MYb239 1 2033438 0 0 671990 1 Serratia sp. FGI94 species 1021 1083 species Serratia sp. AS13 768493 1 0 1 104623 0 species Serratia sp. ATCC 39006 852 2 929812 1 0 14 genus Gibbsiella 1326 0 1 929813 1312 Gibbsiella quercinecans species 1 1565532 0 genus Rouxiella 8 6857 genus 224 Yersinia 13 629 0 1 291 species Yersinia rohdei 29485 1 0 1190 species Yersinia frederiksenii 1 29484 0 species Yersinia kristensenii 317 28152 1 0 29483 1 0 species Yersinia aldovae 481 Yersinia aleksiciae species 429 0 263819 1 0 1 2653513 332 no rank 1 1839800 0 332 species Yersinia sp. FDAARGOS_228 0 631 1 359 Yersinia intermedia species 1649845 3 0 species group 1552 0 633 1 Yersinia pseudotuberculosis species 628 1 367190 0 379 species Yersinia similis 1 632 0 545 species Yersinia pestis 29486 1 0 species Yersinia ruckeri 376 0 630 1 1306 Yersinia enterocolitica species Enterobacteriaceae 1477 family 289143 1 0 115 543 17 191675 0 no rank 1369 17 84563 0 clade 1369 1 199891 0 84 clade 1 1835721 0 84 species secondary endosymbiont of Trabutina mannipara 0 1 1906661 2 Candidatus Gullanella genus 2 104 Candidatus Gullanella endobia species 102 0 1 1070130 0 1906659 1 genus 86 1778263 1 0 species Candidatus Hoaglandella endobia 86 clade 371 3 146507 0 1 134287 0 species secondary endosymbiont of Heteropsylla cubana 96 568987 1 0 genus 165 165 Candidatus Hamiltonella defensa species 0 1 138072 1 1199245 0 species secondary endosymbiont of Ctenarytaina eucalypti 110 genus 70 0 1906657 1 1 1778262 0 species Candidatus Doolittlea endobia 70 clade 485 7 84564 0 485 Candidatus Blochmannia 12 genus 1 0 203804 7 0 251542 1 Candidatus Blochmannia chromaiodes species 40 0 101534 1 Candidatus Blochmannia pennsylvanicus species 48 92 species Candidatus Blochmannia vafer 1 251535 0 187 no rank 711328 2 0 1505597 1 0 110 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 77 1 1505596 0 106 species Candidatus Blochmannia floridanus 203907 1 0 90 genus 0 1906660 1 0 1778264 1 90 Candidatus Mikella endobia species genus 79 0 1682492 1 Candidatus Tachikawaea gelatinosa species 79 0 1 1410383 4 1330545 0 1 genus 47 Lelliottia 3525 648 Lelliottia jeotgali species 0 1907578 1 Lelliottia nimipressuralis species 1336 0 69220 1 0 1 61646 1494 Lelliottia amnigena species 136 genus Cronobacter 8448 413496 8 1 0 0 1 413502 Cronobacter turicensis species 1160 1112 Cronobacter universalis species 0 535744 1 1163710 1 0 species Cronobacter condimenti 968 1 413503 0 995 species Cronobacter malonaticus 413501 1 0 1153 species Cronobacter muytjensii 413497 1 0 species Cronobacter dublinensis 1267 Cronobacter sakazakii species 1657 0 1 28141 1 1048757 0 genus 50 50 species Candidatus Moranella endobia 1048758 1 0 36866 5 0 no rank 4480 1122 species Plautia stali symbiont 1 891974 0 1 1920109 0 865 species Enterobacteriaceae bacterium ENNIH2 779 species Enterobacteriaceae bacterium ENNIH1 2066051 1 0 817 Enterobacteriaceae bacterium ENNIH3 species 0 1920128 1 897 species Enterobacteriaceae bacterium strain FGI 57 1 693444 0 genus 121 0 409304 1 1 168169 0 121 species Candidatus Ishikawaella capsulata Klebsiella 719 genus 26187 1 0 10 570 species Klebsiella michiganensis 2010 1134687 1 0 0 1 1463165 1293 Klebsiella quasipneumoniae species 0 1 573 10276 Klebsiella pneumoniae species no rank 2508 2 2608929 0 1 1905288 0 995 species Klebsiella sp. LTGPAF-6F species Klebsiella sp. M5al 1513 1934254 1 0 244366 1 0 species Klebsiella variicola 2115 Klebsiella quasivariicola species 1116 0 2026240 1 species Klebsiella oxytoca 3708 571 1 0 1 548 0 species Klebsiella aerogenes 2442 1 0 620 4 26324 Shigella 1362 genus 0 1 622 Shigella dysenteriae species 5980 4464 Shigella flexneri species 0 1 623 2629414 1 0 no rank 14518 14518 Shigella sp. PAMC 28760 species 0 1813821 1 139253 Escherichia 851 genus 1 0 561 5 126620 Escherichia coli species 0 562 1 1 208962 0 5872 species Escherichia albertii 564 1 0 4015 species Escherichia fergusonii 1895 species Escherichia marmotae 1 1499973 0 0 1 547 22 Enterobacter genus 1297 24782 0 9 2608935 no rank 5680 1692238 1 0 640 species Enterobacter sp. FY-07 0 1560339 1 445 Enterobacter sp. E20 species 1 399742 0 690 species Enterobacter sp. 638 0 1 2051905 812 Enterobacter sp. CRENT-193 species 1157 Enterobacter sp. SA187 species 0 1 1914861 344 Enterobacter sp. Crenshaw species 0 1 1977566 0 1 1868135 390 Enterobacter sp. HK169 species 1166130 1 0 657 species Enterobacter sp. R4-368 Enterobacter sp. ODB01 species 545 0 1827481 1 12 354276 0 species group 17805 910 Enterobacter cancerogenus species 0 69218 1 1812935 1 0 737 species Enterobacter cloacae complex 'Hoffmann cluster IV' 0 3 2757714 2049 no rank 726 Enterobacter cloacae complex sp. ECNIH7 species 0 1 1915310 824 Enterobacter cloacae complex bacterium species 0 1 2027919 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 499 1 2077137 0 Enterobacter ludwigii species 795 0 299767 1 61645 1 0 2303 species Enterobacter asburiae species Enterobacter kobei 459 208224 1 0 species Enterobacter cloacae 6567 1 550 0 3985 Enterobacter hormaechei 2418 species 1 0 3 158836 Enterobacter xiangfangensis subspecies 544 0 1 1296536 1023 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 1 1812934 0 genus 60 Raoultella 3221 3 160674 0 1 2048 species Raoultella ornithinolytica 54291 1 0 species Raoultella planticola 1113 575 1 0 genus 141 401618 1 0 141 Candidatus Riesia pediculicola species 0 1 401619 Pluralibacter genus 26 4280 0 1 1330546 3 Pluralibacter gergoviae species 2828 0 1 61647 1 1334193 0 1426 species [Enterobacter] lignolyticus 1 0 3 590 15098 Salmonella 307 genus 1 54736 0 888 species Salmonella bongori 13903 species Salmonella enterica 1 28901 0 genus 101 Kosakonia 4060 5 1330547 0 1 Kosakonia radicincitans species 1270 0 283686 1 611 species Kosakonia sacchari 1 1158459 0 824 Kosakonia oryzae species 0 1 497725 1254 Kosakonia cowanii species 0 208223 1 729 genus 0 1 579 729 species Kluyvera intermedia 1 61648 0 2 158483 1 0 12 genus Cedecea 2806 0 1 158822 Cedecea neteri species 2794 genus 872 0 1 1335483 872 species Shimwellia blattae 563 1 0 0 1 544 14 Citrobacter genus 659 19307 1470 no rank 2644389 2 0 Citrobacter sp. CFNIH10 species 794 0 1 1920110 Citrobacter sp. FDAARGOS_156 species 676 0 1 1702170 1324 species Citrobacter rodentium 67825 1 0 11636 species group 0 1344959 7 2077148 1 0 species Citrobacter freundii complex sp. CFNIH4 1211 57706 1 0 species Citrobacter braakii 1079 Citrobacter freundii complex sp. CFNIH2 species 707 0 1 2066049 species Citrobacter werkmanii 1987 67827 1 0 0 1 546 Citrobacter freundii species 5185 Citrobacter freundii complex sp. CFNIH9 species 687 0 1 2077149 780 Citrobacter freundii complex sp. CFNIH3 species 0 2077147 1 0 545 1 Citrobacter koseri species 1282 1 35703 0 species Citrobacter amalonaticus 2148 788 species Citrobacter farmeri 1 67824 0 4 83654 1 0 112 genus Leclercia 2613 Leclercia adecarboxylata species 706 0 83655 1 2 2627398 0 1795 no rank 0 1 1920114 1007 Leclercia sp. LSNIH1 species species Leclercia sp. LSNIH3 788 1 1920116 0 Hafniaceae family 29 10441 0 1 1903412 14 0 1 8 635 Edwardsiella genus 503 7969 Edwardsiella tarda species 2016 0 1 636 0 1821960 1 857 Edwardsiella anguillarum species 1263550 1 0 species Edwardsiella piscicida 923 no rank 1958 0 2 2676541 0 1650654 1 852 Edwardsiella sp. LADL05-105 species 0 1578828 1 1106 Edwardsiella sp. EA181011 species species Edwardsiella ictaluri 928 67780 1 0 Edwardsiella hoshinae species 784 0 1 93378 genus 35 Obesumbacterium 679 2 82982 0 1 Obesumbacterium proteus species 644 0 1 82983 1764 Hafnia 45 genus 1 0 3 568 569 1 0 species Hafnia alvei 1287 no rank 432 2621980 1 0 432 Hafnia sp. CBA7124 species 0 1 1848580 0 451511 2 1053 no rank 1 0 2 702 1053 Plesiomonas 8 genus 1 703 0 species Plesiomonas shigelloides 1045 1903410 20 0 1 family 89 Pectobacteriaceae 16137 1 0 5 84565 2221 Sodalis 48 genus 577 Candidatus Sodalis pierantonius species 0 1486991 1 104 species Sodalis endosymbiont of Henestaris halophilus 1929246 1 0 0 1 1239307 785 Sodalis praecaptivus species 707 Sodalis glossinidius species 0 63612 1 0 1 2 71655 Brenneria genus 9 1051 1042 Brenneria goodwinii species 0 1 1109412 5804 Pectobacterium genus 168 0 1 122277 6 1 29471 0 905 species Pectobacterium atrosepticum 1 1905730 0 species Pectobacterium parmentieri 670 618 Pectobacterium wasabiae species 0 55208 1 0 1 2042057 Pectobacterium polaris species 1102 1 554 0 species Pectobacterium carotovorum 2341 1 0 6 204037 Dickeya 276 genus 6972 1080 species Dickeya fangzhongdai 1778540 1 0 species Dickeya solani 1994 1089444 1 0 204039 1 0 species Dickeya dianthicola 1319 204042 1 0 1065 species Dickeya zeae 0 1 204038 Dickeya dadantii species 1238 1 0 1934945 4 1839 Immundisolibacterales 6 order 1833 Immundisolibacteraceae 17 family 1 0 1934946 3 Immundisolibacter 6 genus 1816 1 0 2 1934947 1 1810504 0 1810 species Immundisolibacter cernigliae 20073 Vibrionales order 18 0 1 44 135623 20055 Vibrionaceae 128 family 1 0 43 641 206 4 genus Paraphotobacterium 2 2042066 1 0 0 1 1755811 202 Paraphotobacterium marinum species 1670 genus 9 Photobacterium 657 4 0 1 1 1295392 0 678 species Photobacterium gaetbulicola 74109 1 0 570 species Photobacterium profundum 1 38293 0 species Photobacterium damselae 413 0 1 30 662 Vibrio genus 308 16845 0 1 666 Vibrio cholerae species 966 species group 5180 0 717610 10 species subgroup 564 0 2 2315253 50719 1 0 373 species Vibrio diabolicus 1 150340 0 191 species Vibrio antiquarius 1 696485 0 species Vibrio owensii 472 Vibrio jasicida species 192 0 766224 1 497 Vibrio harveyi species 0 669 1 0 691 1 Vibrio natriegens species 686 0 1 670 Vibrio parahaemolyticus species 730 0 1 190895 253 Vibrio rotiferianus species 656 Vibrio campbellii species 0 680 1 0 1 663 Vibrio alginolyticus species 1130 0 1 687 387 Vibrio gazogenes species 0 1 29494 Vibrio furnissii species 540 1 45658 0 species Vibrio scophthalmi 435 223 Vibrio qinghaiensis species 0 1 2025808 species Vibrio fluvialis 681 1 676 0 297 Vibrio hyugaensis species 0 1534743 1 2028 species Vibrio anguillarum 1 55601 0 52443 1 0 species Vibrio tapetis 347 0 1 28173 555 Vibrio nigripulchritudo species 0 1 553239 276 Vibrio breoganii species 1435069 1 0 553 species Vibrio tritonius species group 280 0 1 1891919 species Vibrio tubiashii 280 29498 1 0 753 no rank 2614977 2 0 1116375 1 0 species Vibrio sp. EJY3 319 434 Vibrio sp. 2521-89 species 0 2014742 1 0 190893 1 679 Vibrio coralliilyticus species Vibrio mimicus species 712 0 1 674 Vibrio tasmaniensis species 237 0 1 212663 0 1 672 Vibrio vulnificus species 1408 2 genus Grimontia 413 246861 2 1 0 411 Grimontia hollisae species 0 1 673 11 genus Aliivibrio 793 4 511678 1 0 species Aliivibrio fischeri 276 1 668 0 0 80852 1 265 Aliivibrio wodanis species 241 species Aliivibrio salmonicida 40269 1 0 1 0 135613 51 28262 Chromatiales 433 order 0 2 449719 713 family 2 437504 0 1 genus 6 Granulosicoccus 713 Granulosicoccus antarcticus species 707 0 437505 1 451214 2 0 1674 no rank 2 1273155 1 0 1674 26 genus Thiohalobacter 585455 1 0 1648 species Thiohalobacter thiocyanaticus family 145 Ectothiorhodospiraceae 11549 72276 18 0 1 686 14 genus Spiribacter 3 1335745 1 0 0 1 1335746 Spiribacter salinus species 328 species Spiribacter curvatus 344 1335757 1 0 1 0 1765964 2 Acidihalobacter 2 genus 575 Acidihalobacter prosperus species 573 0 160660 1 2 1051 0 1 789 genus 5 Ectothiorhodospira no rank 784 2684909 1 0 1442136 1 0 784 species Ectothiorhodospira sp. BSL-9 1116 Halorhodospira 7 genus 1 0 85108 2 1109 species Halorhodospira halophila 1 1053 0 0 1 2 133193 1412 Alkalilimnicola genus 5 species Alkalilimnicola ehrlichii 1407 1 351052 0 6 106633 0 1 6826 genus 168 Thioalkalivibrio 0 106634 1 Thioalkalivibrio versutus species 1765 1718 Thioalkalivibrio sulfidiphilus species 0 1 1033854 1133 Thioalkalivibrio nitratireducens species 0 186931 1 species Thioalkalivibrio paradoxus 848 1 108010 0 no rank 1194 1 2621013 0 396595 1 0 1194 species Thioalkalivibrio sp. K90mix 18 1046 1 0 190 family Chromatiaceae 11200 747 36 genus Nitrosococcus 4 1227 1 0 0 1 1229 Nitrosococcus oceani species 258 1 133539 0 277 species Nitrosococcus halophilus 0 473531 1 176 Nitrosococcus watsonii species Allochromatium 7 genus 1776 1 0 2 85072 Allochromatium vinosum species 1769 0 1049 1 1816 genus 49 Thiocystis 13724 2 0 1 1767 species Thiocystis violascens 73141 1 0 no rank 1386 1 82569 0 species Chromatiaceae bacterium 2141T.STBD.0c.01a 1386 1978339 1 0 1240 Marichromatium 2 genus 1 0 85076 2 0 37487 1 1238 Marichromatium purpuratum species genus 44 Thiodictyon 2490 53392 2 0 1 0 1 1166950 2446 Candidatus Thiodictyon syntrophicum species 1 0 1980513 2 176 Candidatus Nitrosoglobus 34 genus species Candidatus Nitrosoglobus terrae 142 1630141 1 0 1 0 156885 2 1379 Thioflavicoccus 10 genus 0 80679 1 Thioflavicoccus mobilis species 1369 family 6 Wenzhouxiangellaceae 915 3 1676141 0 1 Wenzhouxiangella 39 genus 909 1 0 1676142 2 870 species Wenzhouxiangella marina 1579979 1 0 family 3 Woeseiaceae 532 1738654 3 0 1 529 2 genus Woeseia 2 1738655 1 0 527 species Woeseia oceani 1548547 1 0 1246 20 family Halothiobacillaceae 255526 4 1 0 Halothiobacillus genus 9 1226 0 1 3 109262 0 927 1 308 Halothiobacillus neapolitanus species 909 no rank 0 1 2636392 1860122 1 0 909 species Halothiobacillus sp. LS2 135622 103 1 0 29889 72 order Alteromonadales 0 1 267890 25 Shewanellaceae family 70 7044 22 24 0 1 6974 genus 133 Shewanella 1 70863 0 species Shewanella oneidensis 253 285 species Shewanella psychrophila 1 225848 0 no rank 1389 196818 6 0 Shewanella sp. ANA-3 species 249 0 1 94122 Shewanella sp. MR-7 species 241 0 60481 1 0 1 60480 Shewanella sp. MR-4 species 300 0 2059264 1 Shewanella sp. Pdp11 species 223 0 2029986 1 Shewanella sp. WE21 species 186 1 351745 0 species Shewanella sp. W3-18-1 190 271098 1 0 species Shewanella halifaxensis 233 239 species Shewanella sediminis 1 271097 0 1 62322 0 species Shewanella baltica 630 Shewanella putrefaciens species 296 0 24 1 60478 1 0 species Shewanella amazonensis 646 213 Shewanella denitrificans species 0 192073 1 404011 1 0 species Shewanella piezotolerans 215 species Shewanella frigidimarina 189 56812 1 0 0 60217 1 Shewanella violacea species 229 1 70864 0 181 species Shewanella pealeana 0 1 93973 Shewanella japonica species 219 2018305 1 0 species Shewanella bicestrii 224 0 1 60961 Shewanella woodyi species 349 1 359303 0 species Shewanella loihica 793 species Shewanella marisflavi 258 260364 1 0 267891 3 0 1 297 family 2 Moritellaceae Moritella genus 9 295 0 1 58050 2 0 1 80854 Moritella viscosa species 286 family 7 Colwelliaceae 2893 8 267889 0 1 0 1 1518149 genus 214 0 1763536 1 214 Thalassotalea crassostreae species Colwellia genus 5 2672 0 1 6 28228 0 28229 1 Colwellia psychrerythraea species 232 Colwellia beringensis species 550 0 1 1967665 1885 no rank 3 196834 0 1816219 1 0 species Colwellia sp. PAMC 21821 543 species Colwellia sp. PAMC 20917 261 1816218 1 0 1081 Colwellia sp. MT41 species 0 58049 1 0 1 29 72275 Alteromonadaceae family 39 11676 688 Agarivorans 1 genus 1 0 261825 2 687 Agarivorans gilvus species 0 680279 1 0 1621534 1 genus 388 388 Paraglaciecola psychrophila species 0 326544 1 10 226 1 0 3482 27 genus Alteromonas 0 287094 1 Alteromonas addita species 329 3 2614992 0 no rank 652 339 Alteromonas sp. Mac1 species 0 1777491 1 0 1 2058133 154 Alteromonas sp. MB-3u-76 species species Alteromonas sp. RW2A1 159 1917158 1 0 715451 1 0 244 species Alteromonas naphthalenivorans Alteromonas australica species 410 0 1 589873 233316 1 0 species Alteromonas stellipolaris 321 species Alteromonas macleodii 728 28108 1 0 1 314275 0 species Alteromonas mediterranea 771 0 1 1751872 2 Lacimicrobium genus 3 830 0 1526571 1 827 Lacimicrobium alkaliphilum species 2742 10 1 0 5858 72 genus Marinobacter Marinobacter similis species 857 0 1420916 1 1843 no rank 0 3 83889 1671721 1 0 species Marinobacter sp. CP1 722 species Marinobacter sp. BSs20148 332 1 490759 0 0 1 1749259 Marinobacter sp. LQ44 species 789 Marinobacter salarius species 715 0 1420917 1 0 1 2743 Marinobacter hydrocarbonoclasticus species 1033 0 1 1033846 Marinobacter adhaerens species 626 1874317 1 0 523 species Marinobacter salinus 1 330734 0 species Marinobacter psychrophilus 189 391 2 genus Glaciecola 89404 3 1 0 228 Glaciecola nitratireducens species 0 1 300231 161 no rank 0 1 2618684 0 1 983545 Glaciecola sp. 4H-3-7+YE-5 species 161 1335 family 8 Ferrimonadaceae 267892 3 0 1 1 0 44011 2 1327 Ferrimonas 15 genus 1312 Ferrimonas balearica species 0 1 44012 1 0 6 267893 Idiomarinaceae 10 family 828 Idiomarina genus 13 818 0 1 135575 5 species Idiomarina piscisalsi 230 1 1096243 0 no rank 373 0 2 2614829 167 species Idiomarina sp. X4 2055892 1 0 species Idiomarina sp. OT37-5b 206 2100422 1 0 202 Idiomarina loihiensis species 0 135577 1 family 599 3 267894 0 599 Psychromonas genus 1 0 1 67572 3 357794 1 0 species Psychromonas ingrahamii 373 225 no rank 0 2614957 1 Psychromonas sp. CNPT3 species 225 0 1 314282 1 0 267888 25 5145 Pseudoalteromonadaceae 22 family 0 1 24 53246 5123 Pseudoalteromonas genus 101 0 1 394751 Pseudoalteromonas arctica species 187 1 28107 0 109 species Pseudoalteromonas espejiana Pseudoalteromonas atlantica species 275 0 288 1 0 1 43662 204 Pseudoalteromonas piscicida species Pseudoalteromonas luteoviolacea species 303 0 1 43657 0 1348114 1 Pseudoalteromonas piratica species 299 314281 1 0 351 species Pseudoalteromonas tunicata 0 1 298657 Pseudoalteromonas spongiae species 252 0 194690 5 no rank 1067 159 Pseudoalteromonas sp. 13-15 species 0 1 1761891 1514074 1 0 234 species Pseudoalteromonas sp. NC201 Pseudoalteromonas sp. Bsw20308 species 276 0 1 283699 174 species Pseudoalteromonas sp. SM9913 1 234831 0 224 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 0 1720343 1 Pseudoalteromonas agarivorans species 178 0 176102 1 0 1 166935 104 Pseudoalteromonas translucida species 0 43659 1 Pseudoalteromonas tetraodonis species 169 178 species Pseudoalteromonas aliena 1 247523 0 153 species Pseudoalteromonas marina 267375 1 0 0 1 161398 Pseudoalteromonas phenolica species 309 0 28109 1 Pseudoalteromonas nigrifaciens species 220 195 species Pseudoalteromonas issachenkonii 1 152297 0 300 species Pseudoalteromonas rubra 1 43658 0 1 228 0 species Pseudoalteromonas haloplanktis 169 2508 order 43 Acidiferrobacterales 1692040 6 0 1 0 1 1692041 5 2465 Acidiferrobacteraceae family 33 0 1 2 1692042 1233 Sulfurifustis genus 50 0 1675686 1 1183 Sulfurifustis variabilis species 1744881 2 1 0 1199 8 genus Sulfuricaulis 1620215 1 0 species Sulfuricaulis limicola 1191 0 2 33811 no rank 2273 species gamma proteobacterium HdN1 818 83406 1 0 species endosymbiont of unidentified scaly snail isolate Monju 1455 1248727 1 0 2794 no rank 13 118884 0 0 198346 1 clade 180 1 186490 0 180 species Candidatus Baumannia cicadellinicola 1 genus Pseudohongiella 454 1524249 2 1 0 1 1249552 0 453 species Pseudohongiella spirulinae 291 clade 3 32036 0 0 113267 1 Bathymodiolus septemdierum thioautotrophic gill symbiont species 107 70 Calyptogena okutanii thioautotrophic gill symbiont species 0 1 410330 genus 114 1541743 1 0 Candidatus Ruthia magnifica species 114 0 1 386487 Thiolapillus genus 31 616 0 1 1608298 2 species Thiolapillus brandeum 585 1076588 1 0 Sedimenticola 3 genus 987 1 0 349742 2 species Sedimenticola thiotaurini 984 1543721 1 0 655184 3 1 0 266 2 genus Candidatus Thioglobus species Candidatus Thioglobus singularis 121 1427364 1 0 Candidatus Thioglobus autotrophicus species 143 0 1705394 1 135618 13 0 1 5385 order 31 Methylococcales 12 403 1 0 5354 69 family Methylococcaceae 0 1 416 5 Methylomonas genus 35 3150 0 702114 1 Methylomonas koyamae species 902 645 species Methylomonas denitrificans 1538553 1 0 0 1 2608980 no rank 982 982 Methylomonas sp. DH-1 species 0 1 1727196 586 Methylomonas methanica species 0 1 421 Methylomicrobium genus 5 464 0 1 2 39773 459 Methylomicrobium alcaliphilum species 0 1 271065 522 Methylovulum 3 genus 1 0 2 762296 Methylovulum psychrotolerans species 519 0 1 1704499 0 1 413 2 1149 Methylococcus genus 5 414 1 0 1144 species Methylococcus capsulatus 0 1 27 1706369 8099 Cellvibrionales order 46 0 1 1706375 5 1076 Spongiibacteraceae family 1 316 genus 630749 1 0 316 no rank 2631504 1 0 0 1 1620392 316 Spongiibacter sp. IMCC21906 species 1434050 2 0 1 341 genus 3 Zhongshania 338 species Zhongshania aliphaticivorans 1 1470434 0 0 1084558 1 genus 418 418 species Oceanicoccus sagamiensis 716816 1 0 0 1 4 1706372 Halieaceae family 69 938 1217416 3 0 1 genus 12 Halioglobus 869 species Halioglobus pacificus 393 1 930806 0 464 species Halioglobus japonicus 1 930805 0 Cellvibrionaceae 13 family 3936 1 0 1706371 12 548 genus 10 Teredinibacter 2425 2 0 1 species Teredinibacter turnerae 538 1 2426 0 236 1 genus Saccharophagus 316625 2 1 0 86304 1 0 species Saccharophagus degradans 235 0 2036021 1 genus 354 0 1737490 1 354 Agarilytica rhodophyticola species 2 447467 0 1 610 genus 2 Simiduia species Simiduia agarivorans 608 1 447471 0 Cellvibrio 13 genus 2175 1 0 4 10 Cellvibrio japonicus species 679 0 1 155077 no rank 1483 2624793 2 0 1044 Cellvibrio sp. PSBB006 species 0 1 1987723 1945512 1 0 species Cellvibrio sp. PSBB023 439 0 1 1706373 5 2103 Microbulbiferaceae family 8 2095 27 genus Microbulbifer 4 48073 1 0 species Microbulbifer aggregans 718 1 1769779 0 0 252514 1 865 Microbulbifer thermotolerans species 485 Microbulbifer agarilyticus species 0 1 260552 128 72274 0 1 158466 order 845 Pseudomonadales 144423 1004 family Pseudomonadaceae 85 135621 1 0 3 351 0 4612 subfamily 4612 Azotobacter 46 genus 1 0 3 352 1 353 0 species Azotobacter chroococcum 2888 1 354 0 species Azotobacter vinelandii 1678 0 1849530 1 genus 224 224 Oblitimonas alkaliphila species 0 1 1697053 Pseudomonas genus 4961 138583 0 1 80 286 1 244566 0 1022 species Pseudomonas lurida Pseudomonas versuta species 606 0 1 1788301 0 1 237609 Pseudomonas alkylphenolica species 1052 0 1 216142 Pseudomonas rhizosphaerae species 1019 0 157783 1 1320 Pseudomonas cremoricolorata species 65741 1 0 1768 species Pseudomonas knackmussii 0 8 136849 13312 species group 774 Pseudomonas cichorii species 0 1 36746 33069 1 0 species Pseudomonas viridiflava 1008 Pseudomonas avellanae species 797 0 1 46257 0 1 2775504 737 no rank 1 1206777 0 species Pseudomonas sp. Lz4W 737 species subgroup 2594 2 251698 0 species Pseudomonas amygdali 1322 1 47877 0 29438 1 0 species Pseudomonas savastanoi 1272 251695 1 0 5692 species subgroup 0 1 317 5692 Pseudomonas syringae species 0 251701 1 Pseudomonas syringae group genomosp. 3 species 1710 1 312306 0 species Pseudomonas entomophila 856 species Pseudomonas frederiksbergensis 1456 1 104087 0 930166 1 0 species Pseudomonas brassicacearum 2451 species group 9601 0 136846 2 1332 species Pseudomonas balearica 74829 1 0 578833 1 0 species subgroup 8269 0 1 316 8269 Pseudomonas stutzeri species 0 6 136841 19068 species group 1 53408 0 species Pseudomonas citronellolis 3528 1 53412 0 1337 species Pseudomonas resinovorans 1 300 0 4966 species Pseudomonas mendocina 1173 Pseudomonas alcaligenes species 0 43263 1 species subgroup 1258 0 1232139 1 1258 Pseudomonas furukawaii species 0 1 1149133 6806 Pseudomonas aeruginosa species 0 287 1 1 237610 0 species Pseudomonas psychrotolerans 1473 0 1 1853130 579 Pseudomonas silesiensis species 0 136843 9 species group 17544 0 1 200451 942 Pseudomonas poae species species Pseudomonas mandelii 787 1 75612 0 1 47879 0 731 species Pseudomonas corrugata 0 47878 1 Pseudomonas azotoformans species 1151 0 76761 1 636 Pseudomonas veronii species 848 species Pseudomonas orientalis 1 76758 0 380021 1 0 1323 species Pseudomonas protegens 200450 1 0 1203 species Pseudomonas trivialis species Pseudomonas fluorescens 9923 1 294 0 Pseudomonas koreensis species 1327 0 1 198620 0 1583341 1 Pseudomonas cerasi species 1069 26771 no rank 0 196821 30 1 1415630 0 479 species Pseudomonas sp. TKP 0 1 2083055 Pseudomonas sp. LH1G9 species 726 689 Pseudomonas sp. SWI6 species 0 2083051 1 species Pseudomonas sp. HLS-6 756 1 2049589 0 1 1028989 0 species Pseudomonas sp. StFLB209 852 species Pseudomonas sp. UW4 680 1 1207075 0 Pseudomonas sp. NC02 species 867 0 1 2067572 0 1 1649877 716 Pseudomonas sp. CCOS 191 species 1 1636610 0 species Pseudomonas sp. PONIH3 891 Pseudomonas sp. St29 species 985 0 1500687 1 0 1 2083053 Pseudomonas sp. SWI44 species 757 Pseudomonas sp. GR 6-02 species 477 0 1659194 1 1 1534110 0 species Pseudomonas sp. DR 5-09 813 1372 Pseudomonas sp. URMO17WK12:I11 species 0 1283291 1 1 1931241 0 species Pseudomonas sp. S-6-2 1195 1 69328 0 species Pseudomonas sp. VLB120 759 767 species Pseudomonas sp. Os17 1 1500686 0 1 1827300 0 661 species Pseudomonas sp. MYb193 0 1 1856685 Pseudomonas sp. TCU-HL1 species 1293 species Pseudomonas sp. FGI182 683 1 1259844 0 1981174 1 0 species Pseudomonas sp. M30-35 385 0 1 1930532 1003 Pseudomonas sp. CC6-YY-74 species Pseudomonas sp. FDAARGOS_380 species 904 0 2018067 1 793 species Pseudomonas sp. XWY-1 2069256 1 0 Pseudomonas sp. LPH1 species 1363 0 1898684 1 1611770 1 0 species Pseudomonas sp. MRSN12121 1197 0 1 1338689 957 Pseudomonas sp. JY-Q species 1959 species Pseudomonas sp. ATCC 13867 1294143 1 0 Pseudomonas sp. LG1D9 species 518 0 1 2083054 0 2083052 1 1274 Pseudomonas sp. SWI36 species Pseudomonas parafulva species 1702 0 1 157782 0 101564 1 1101 Pseudomonas alcaliphila species species group 7265 0 136842 2 species Pseudomonas fragi 1273 1 296 0 species Pseudomonas chlororaphis 5992 587753 1 0 Pseudomonas antarctica species 915 0 219572 1 136845 6 0 species group 20345 species Pseudomonas putida 11242 1 303 0 species Pseudomonas monteilii 2896 76759 1 0 Pseudomonas fulva species 1410 0 1 47880 1364 species Pseudomonas oryzihabitans 1 47885 0 2467 Pseudomonas mosselii species 0 1 78327 species Pseudomonas plecoglossicida 966 1 70775 0 42 468 0 1 13198 family 56 Moraxellaceae 0 1 25 469 Acinetobacter genus 173 9292 326 species 0 1 202950 strain Acinetobacter sp. ADP1 326 62977 1 0 3249 species group 5 909768 0 1 470 0 1195 species Acinetobacter baumannii 106654 1 0 species Acinetobacter nosocomialis 370 48296 1 0 954 species Acinetobacter pittii 471 1 0 species Acinetobacter calcoaceticus 543 0 1 1785128 187 Acinetobacter lactucae species species Acinetobacter schindleri 425 108981 1 0 1 29430 0 species Acinetobacter haemolyticus 462 no rank 1436 0 196816 7 201 Acinetobacter sp. ACNIH2 species 0 1 1758189 1 2079596 0 species Acinetobacter sp. SWBY1 214 Acinetobacter sp. NCu2D-2 species 183 0 1608473 1 1 1407071 0 species Acinetobacter sp. TGL-Y2 245 167 species Acinetobacter sp. TTH0-4 1 1646498 0 0 1 1636603 211 Acinetobacter sp. ACNIH1 species species Acinetobacter sp. LoGeW2-3 215 1 1808001 0 species Acinetobacter johnsonii 575 1 40214 0 0 1 487316 252 Acinetobacter soli species 1324350 1 0 299 species Acinetobacter equi 203 species Acinetobacter oleivorans 1148157 1 0 364 species Acinetobacter larvae 1 1789224 0 288 species Acinetobacter radioresistens 1 40216 0 Acinetobacter bereziniae species 424 0 106648 1 471 species Acinetobacter indicus 1 756892 0 345 species Acinetobacter junii 1 40215 0 5 475 1 0 272 genus Moraxella 1990 657 species Moraxella bovoculi 1 386891 0 species Moraxella catarrhalis 325 1 480 0 258 species Moraxella ovis 29433 1 0 0 34062 1 Moraxella osloensis species 478 1 0 11 497 1860 Psychrobacter 14 genus species Psychrobacter cryohalolentis 112 1 330922 0 225 species Psychrobacter alimentarius 261164 1 0 196806 6 0 1140 no rank Psychrobacter sp. P11G5 species 194 0 1699624 1 species Psychrobacter sp. G 133 1 571800 0 1 1028416 0 217 species Psychrobacter sp. DAB_AL43B 1699622 1 0 190 species Psychrobacter sp. P2G3 256 species Psychrobacter sp. AntiMn-1 1720344 1 0 349106 1 0 species Psychrobacter sp. PRwf-1 150 1 334543 0 species Psychrobacter arcticus 229 Psychrobacter urativorans species 140 0 1 45610 1 0 135624 29 Aeromonadales 151 order 34556 84642 28 1 0 386 family Aeromonadaceae 34405 2 43947 1 0 685 1 genus Tolumonas 43948 1 0 684 species Tolumonas auensis 2 347533 1 0 10 genus Zobellella 2237 2227 Zobellella denitrificans species 0 1 347534 407 Oceanisphaera 1 genus 1 0 3 225143 230 species Oceanisphaera profunda 1 1416627 0 1903694 1 0 176 species Oceanisphaera sp. AMac2203 Oceanimonas genus 6 1667 0 1 129577 2 1661 no rank 0 1 2636315 511062 1 0 species Oceanimonas sp. GK1 1661 18 642 1 0 2315 genus Aeromonas 29023 species Aeromonas caviae 688 1 648 0 0 1 644 Aeromonas hydrophila species 6853 1 948519 0 1426 species Aeromonas rivipollensis Aeromonas aquatica species 1196 0 558964 1 0 1 654 2803 Aeromonas veronii species 1597 species Aeromonas schubertii 652 1 0 7613 no rank 0 8 257493 1 2033032 0 species Aeromonas sp. CA23 1315 616 Aeromonas sp. ASNIH2 species 0 1636607 1 0 1636606 1 Aeromonas sp. ASNIH1 species 647 0 1 2033033 1007 Aeromonas sp. CU5 species species Aeromonas sp. ASNIH4 1520 1 1636609 0 Aeromonas sp. ASNIH5 species 1019 0 1758179 1 0 1 1920107 Aeromonas sp. ASNIH7 species 807 0 1636608 1 Aeromonas sp. ASNIH3 species 682 0 645 1 2000 Aeromonas salmonicida species 0 1 651 951 Aeromonas media species 1581 species Aeromonas dhakensis 196024 1 0 3 order Legionellales 3893 118969 20 1 0 4 118968 1 0 3 family Coxiellaceae 465 0 134284 1 no rank 209 0 1592897 1 209 Coxiella-like endosymbiont species 2 776 0 genus 253 0 2676648 1 82 no rank 82 species Coxiella endosymbiont of Amblyomma americanum 1 325775 0 171 species Coxiella burnetii 777 1 0 3425 family 24 Legionellaceae 15 444 0 1 12 445 0 1 3248 genus 18 Legionella Legionella spiritensis species 342 0 1 452 290 species Legionella endosymbiont of Polyplax serrata 1 2005262 0 Legionella waltersii species 204 0 66969 1 Legionella pneumophila species 1039 0 1 446 170 Legionella clemsonensis species 0 1 1867846 0 1 96230 144 Legionella fallonii species 1 449 0 200 species Legionella hackeliae 204 Legionella oakridgensis species 0 29423 1 0 450 1 Legionella longbeachae species 284 0 28087 1 207 Legionella sainthelensi species species Legionella lansingensis 146 1 45067 0 Tatlockia genus 1 153 0 1 2 465 1 451 0 species Tatlockia micdadei 152 135619 66 1 0 29319 329 order Oceanospirillales 0 1 9 135620 Oceanospirillaceae family 22 3114 1000 10 genus Marinomonas 4 28253 1 0 1 936476 0 291 species Marinomonas posidonica 315 no rank 196814 1 0 Marinomonas sp. MWYL1 species 315 0 400668 1 119864 1 0 species Marinomonas mediterranea 384 48075 1 0 1216 genus 1216 species Marinobacterium aestuarii 1 1821621 0 159 genus 0 1 188907 0 1 188908 Oleispira antarctica species 159 1 187492 0 genus 343 1 187493 0 species Thalassolituus oleivorans 343 374 genus 1 1537406 0 species Bacterioplanes sanyensis 374 1249553 1 0 1 0 224379 3 919 Hahellaceae 3 family 0 1 158481 2 916 Hahella genus 5 1 158327 0 species Hahella chejuensis 911 443 1 family Oleiphilaceae 191033 3 1 0 0 1 141450 2 442 Oleiphilus genus 8 0 141451 1 Oleiphilus messinensis species 434 family 5 Kangiellaceae 745 6 1920240 0 1 740 Kangiella genus 17 0 1 261963 5 0 1144748 1 Kangiella sediminilitoris species 161 0 261964 1 Kangiella koreensis species 180 264 Kangiella profundi species 0 1561924 1 118 Kangiella geojedonensis species 0 914150 1 4188 family 35 Alcanivoracaceae 224372 9 0 1 0 1 2 2025617 Ketobacter genus 7 729 Ketobacter alkanivorans species 722 0 1 1917421 Alcanivorax genus 60 3424 0 1 6 59753 0 1094342 1 Alcanivorax xenomutans species 787 Alcanivorax pacificus species 1167 0 1306787 1 1 285091 0 927 species Alcanivorax dieselolei 0 59754 1 236 Alcanivorax borkumensis species 0 1 2638842 247 no rank 247 species Alcanivorax sp. NBRC 101098 1 1113728 0 1 0 30 28256 Halomonadaceae 328 family 18612 11406 Halomonas 183 genus 1 0 2745 15 1322 species Halomonas aestuarii 1 1897729 0 755 Halomonas hydrothermalis species 0 115561 1 5921 no rank 0 8 2609666 species Halomonas sp. KO116 762 1504981 1 0 1 1610576 0 749 species Halomonas sp. R57-5 Halomonas sp. 'Soap Lake #6' species 267 0 1949203 1 1 1962264 0 species Halomonas sp. 'Soap Lake #7' 267 species Halomonas sp. 1513 1769 1 1883416 0 0 1 2136172 1218 Halomonas sp. SF2003 species 0 1971364 1 540 Halomonas sp. GT species 349 species Halomonas sp. GFAJ-1 1 1118153 0 species Halomonas beimenensis 1449 1 475662 0 0 507626 1 852 Halomonas chromatireducens species species Halomonas huangheensis 594 1 1178482 0 330 species Halomonas campaniensis 1 213554 0 1905 8 genus Cobetia 2 204286 1 0 28258 1 0 1897 species Cobetia marina 782 Chromohalobacter genus 23 0 1 2 42054 species Chromohalobacter salexigens 759 1 158080 0 2 404432 0 1 genus 13 Salinicola 1154 species Salinicola tamaricis 1141 1 1771309 0 2 376488 1 0 10 genus Halotalea 1220 0 376489 1 1210 Halotalea alkalilenta species 11 genus Kushneria 1714 3 504090 1 0 961 species Kushneria konosiri 1 698828 0 species Kushneria marisflavi 742 157779 1 0 103 no rank 0 114403 3 1 235572 0 genus 50 1 91844 0 50 species Candidatus Portiera aleyrodidarum 1 1495768 0 48 genus 0 1 1495769 Candidatus Evansia muelleri species 48 genus 5 0 114185 1 0 114186 1 Candidatus Carsonella ruddii species 5 969 family 26 Saccharospirillaceae 5 255527 0 1 0 1 2 1445504 518 Gynuella genus 7 species Gynuella sunshinyii 511 1445505 1 0 0 1 230494 2 Reinekea genus 73 425 Reinekea forsetii species 352 0 1336806 1 1 0 135614 54 Xanthomonadales 639 order 68275 39 32033 0 1 family 436 Xanthomonadaceae 57395 83618 3 1 0 4655 67 genus Pseudoxanthomonas 0 314722 1 3554 Pseudoxanthomonas suwonensis species 1 415229 0 species Pseudoxanthomonas spadix 1034 0 1 83614 2 Luteimonas genus 7 945 2006110 1 0 species Luteimonas sp. 100111 938 17 338 0 1 genus 1250 Xanthomonas 21627 1 456327 0 species Xanthomonas euvesicatoria 791 48664 1 0 species Xanthomonas fragariae 387 0 53413 1 710 Xanthomonas axonopodis species 548 Xanthomonas alfalfae species 0 366650 1 species Xanthomonas albilineans 886 1 29447 0 0 56458 1 Xanthomonas sacchari species 2810 species Xanthomonas vasicola 761 1 56459 0 0 643453 2 3441 species group Xanthomonas fuscans species 910 0 366648 1 0 346 1 2531 Xanthomonas citri species 0 56460 1 801 Xanthomonas vesicatoria species 343 1 0 2795 species Xanthomonas translucens 0 56454 1 Xanthomonas hortorum species 1060 Xanthomonas campestris species 2375 0 1 339 613 species Xanthomonas phaseoli 1985254 1 0 species Xanthomonas perforans 952 442694 1 0 0 1 347 1447 Xanthomonas oryzae species genus 4 Xylella 599 2370 2 0 1 0 2371 1 595 Xylella fastidiosa species Stenotrophomonas genus 367 20225 0 1 9 40323 5410 no rank 4 196198 0 1588 Stenotrophomonas sp. LM091 species 0 1904944 1 1143 Stenotrophomonas sp. WZN-1 species 0 2005046 1 0 1827305 1 1272 Stenotrophomonas sp. MYb57 species 0 1 1793721 1407 Stenotrophomonas sp. KCTC 12332 species species Stenotrophomonas rhizophila 1286 216778 1 0 995085 1 0 8924 species group 8924 Stenotrophomonas maltophilia species 0 1 40324 128780 1 0 2759 species Stenotrophomonas acidaminiphila 0 1 83617 1479 Stenotrophomonas nitritireducens species 0 1 5 68 8908 Lysobacter genus 127 Lysobacter gummosus species 1854 0 262324 1 1 435897 0 species Lysobacter capsici 2433 species Lysobacter antibioticus 2558 84531 1 0 1 69 0 species Lysobacter enzymogenes 1936 1 0 1775411 14 Rhodanobacteraceae 89 family 10241 70411 2 0 1 894 genus 3 Frateuria 0 1 81475 891 Frateuria aurantia species Luteibacter 9 genus 996 1 0 2 242605 Luteibacter rhizovicinus species 987 0 1 242606 4556 Dyella 100 genus 1 0 231454 4 231455 1 0 species Dyella japonica 1488 Dyella thiooxydans species 1855 0 445710 1 Dyella jiangningensis species 1113 0 1379159 1 2 75309 1 0 12 genus Rhodanobacter 1283 666685 1 0 species Rhodanobacter denitrificans 1271 1490 29 genus Dokdonella 323413 2 1 0 1461 species Dokdonella koreensis 1 323415 0 genus 933 1 2233801 0 933 species Xanthomonadales bacterium D13 1 2021234 0 Betaproteobacteria 610 class 454881 1 0 348 28216 1441 no rank 0 119066 11 1 1301080 0 21 genus 21 species Candidatus Nasuia deltocephalinicola 1160784 1 0 0 189384 1 genus 14 14 species Candidatus Tremblaya princeps 1 189385 0 47 genus 1381133 1 0 0 669502 1 47 Candidatus Profftella armatura species 1 0 327159 2 Candidatus Accumulibacter 12 genus 890 0 327160 1 878 Candidatus Accumulibacter phosphatis species 469 Kinetoplastibacterium 10 genus 1 0 6 33055 102 species Candidatus Kinetoplastibacterium desouzaii 1 994692 0 species Candidatus Kinetoplastibacterium galatii 82 1 994695 0 species Kinetoplastibacterium blastocrithidii 72 233181 1 0 0 994696 1 Candidatus Kinetoplastibacterium oncopeltii species 78 0 1 33056 125 Candidatus Kinetoplastibacterium crithidii species Burkholderiales 3715 order 386824 1 0 233 80840 no rank 3454 0 80841 2 species Burkholderiales bacterium GJ-E10 1084 1 1469502 0 2370 species Burkholderiales bacterium YL45 1 1834205 0 1550 family Comamonadaceae 83623 80864 58 1 0 364316 2 1 0 1797 8 genus Verminephrobacter species Verminephrobacter eiseniae 1789 1 364317 0 0 1 47420 4 Hydrogenophaga genus 54 4698 no rank 3730 0 2610897 2 2306 species Hydrogenophaga sp. PBC 1 795665 0 Hydrogenophaga sp. RAC07 species 1424 0 1 1842537 1 1763535 0 914 species Hydrogenophaga crassostreae 1268 Simplicispira genus 1 0 1 352450 2 species Simplicispira sp. SC1-8 1267 2109915 1 0 Comamonas genus 42 7199 0 1 283 4 4274 Comamonas testosteroni species 0 1 285 225992 1 0 1255 species Comamonas kerstersii 1082851 1 0 species Comamonas serinivorans 1628 2195 Diaphorobacter 7 genus 1 0 2 238749 0 1 1546149 2188 Diaphorobacter polyhydroxybutyrativorans species 0 1 2678886 2104 genus species Melaminivora sp. SC2-7 2104 1 2116657 0 314 genus Delftia 11381 80865 5 1 0 Delftia acidovorans species 2602 0 1 80866 0 2 2613839 no rank 6141 3118 Delftia sp. Cs1-4 species 0 742013 1 3023 species Delftia sp. HK171 1 1920191 0 180282 1 0 2324 species Delftia tsuruhatensis 3083 Polaromonas 27 genus 1 0 3 52972 Polaromonas naphthalenivorans species 1991 0 1 216465 0 1 2638319 no rank 1065 1065 species Polaromonas sp. JS666 296591 1 0 9 12916 0 1 genus 561 Acidovorax 12987 2684926 4 0 6772 no rank species Acidovorax sp. RAC01 1393 1 1842533 0 1820 Acidovorax sp. KKS102 species 0 1 358220 0 232721 1 Acidovorax sp. JS42 species 1818 Acidovorax sp. T1 species 1741 0 1 1858609 species Acidovorax avenae 1541 80867 1 0 0 553814 1 1018 Acidovorax sp. NA3 species 0 1 721785 Acidovorax ebreus species 1655 0 1 80869 Acidovorax citrulli species 1440 1174 18 genus Limnohabitans 3 665874 1 0 1156 no rank 0 2626134 2 species Limnohabitans sp. 103DPR2 358 1 1678129 0 Limnohabitans sp. 63ED37-2 species 798 0 1 1678128 2496 genus 0 2 2490452 1300 species Comamonadaceae bacterium B1 1458426 1 0 0 1458425 1 1196 Comamonadaceae bacterium A1 species 272 genus Variovorax 12738 34072 5 1 0 no rank 4278 0 2 663243 Variovorax sp. PAMC 28711 species 1652 0 1795631 1 0 2126319 1 2626 Variovorax sp. PMC12 species 0 1 436515 Variovorax boronicumulans species 2533 5655 Variovorax paradoxus species 0 34073 1 2 174951 1 0 33 genus Ramlibacter 4987 0 1 94132 Ramlibacter tataouinensis species 4954 2 201096 1 0 18 genus Alicycliphilus 2870 0 179636 1 Alicycliphilus denitrificans species 2852 614 genus 1 1436289 0 0 1436290 1 614 Candidatus Symbiobacter mobilis species 4752 Rhodoferax 48 genus 1 0 28065 5 1 1484693 0 species Rhodoferax saidenbachensis 1013 species Rhodoferax antarcticus 897 1 81479 0 1842727 1 0 species Rhodoferax koreense 1770 0 1 192843 1024 Rhodoferax ferrireducens species genus 37 Melaminivora 2490 2 1649468 0 1 2453 no rank 0 2641902 1 species Melaminivora sp. SC2-9 2453 2109913 1 0 219181 3 1 0 3240 57 genus Ottowia no rank 1511 2645081 1 0 species Ottowia sp. oral taxon 894 1511 1658672 1 0 0 2109914 1 Ottowia sp. KADR8-3 species 1672 506 42 0 1 family 341 Alcaligenaceae 61164 325 2 genus Paenalcaligenes 2 1100891 1 0 1 643674 0 323 species Paenalcaligenes hominis 222 6 0 1 25169 genus 778 Achromobacter species Achromobacter denitrificans 5524 1 32002 0 0 217203 1 3755 Achromobacter spanius species 10555 Achromobacter xylosoxidans species 0 85698 1 0 1 217204 1880 Achromobacter insolitus species 2677 no rank 0 1 2626865 species Achromobacter sp. AONIH1 2677 1758194 1 0 Orrella 22 genus 2545 1 0 1921582 2 species Orrella dioscoreae 2523 1 1851544 0 Bordetella genus 900 26711 0 1 517 17 1251 Bordetella petrii species 0 1 94624 species Bordetella pseudohinzii 1808 1331258 1 0 519 1 0 species Bordetella parapertussis 1970 Bordetella genomosp. 8 species 1597 0 1416806 1 1 103855 0 1719 species Bordetella hinzii 0 1 463014 1576 Bordetella flabilis species 1 35814 0 species Bordetella holmesii 692 0 1 463024 1918 Bordetella genomosp. 6 species 3359 Bordetella bronchiseptica species 0 1 518 Bordetella avium species 694 0 1 521 1531 no rank 1 2630031 0 1697043 1 0 species Bordetella sp. H567 1531 1 463025 0 species Bordetella bronchialis 1712 species Bordetella genomosp. 9 1276 1 1416803 0 1 123899 0 1630 species Bordetella trematum 0 1 463040 Bordetella genomosp. 13 species 1587 Bordetella pertussis species 1491 0 520 1 518 genus 1 Pusillimonas 2 305976 0 1 0 2640016 1 no rank 517 1007105 1 0 517 species Pusillimonas sp. T7-7 0 1 290425 3 Advenella genus 6 1179 Advenella kashmirensis species 492 0 1 310575 0 302406 1 681 Advenella mimigardefordensis species 168 genus 1472344 1 0 168 Basilea psittacipulmonis species 0 1472345 1 2 genus Taylorella 356 3 29574 1 0 29575 1 0 166 species Taylorella equigenitalis 0 84590 1 Taylorella asinigenitalis species 188 359336 2 1 0 28 genus Castellaniella 1944 75697 1 0 species Castellaniella defragrans 1916 1 0 2 507 1669 Alcaligenes 25 genus 1644 Alcaligenes faecalis species 0 511 1 239 genus 0 90243 1 1 90245 0 239 species Oligella urethralis 17 224471 0 19629 no rank 2208 109 genus Rhizobacter 212743 2 1 0 946333 1 0 2099 species Rhizobacter gummiphilus 1 0 316612 2 Methylibium 55 genus 1971 Methylibium petroleiphilum species 1916 0 1 105560 1 0 2 28067 3815 Rubrivivax 128 genus 0 1 28068 3687 Rubrivivax gelatinosus species 88 2 0 1 genus 38 Leptothrix 1565 1 34029 0 species Leptothrix cholodnii 1527 1 0 93681 2 Roseateles 129 genus 1947 1818 Roseateles depolymerans species 0 1 76731 32012 2 0 1 genus 92 Thiomonas 1898 Thiomonas intermedia species 1806 0 926 1 318147 2 1 0 1752 30 genus Paucibacter no rank 1722 1 2642959 0 1722 species Paucibacter sp. KCTC 42545 1 1768242 0 1 0 2 65047 2926 Mitsuaria 231 genus 2648776 1 0 2695 no rank 2695 Mitsuaria sp. 7 species 0 1658665 1 0 413882 1 1547 [Polyangium] brachysporum species 1 0 75682 29 83444 Oxalobacteraceae 446 family 4 202907 0 1 genus 51 Collimonas 4759 0 279058 1 Collimonas arenae species 1792 1 279113 0 1564 species Collimonas pratensis 0 1 158899 1352 Collimonas fungivorans species 12016 Massilia 237 genus 1 0 6 149698 1447 Massilia sp. B2 species 0 1 2045208 no rank 4673 0 2 2609279 2730 species Massilia sp. NR 4-1 1 1678028 0 0 1707785 1 1943 Massilia sp. WG5 species 2698 Massilia putida species 0 1 1141883 2961 species Massilia sp. ZMN-3 1 2072590 0 1 0 29580 7 8881 Janthinobacterium 90 genus 0 2610881 4 no rank 5312 1 1938606 0 species Janthinobacterium sp. LM6 1660 1 1644131 0 species Janthinobacterium sp. 1_2014MBL_MicDiv 2485 1236179 1 0 518 species Janthinobacterium sp. B9-8 Janthinobacterium sp. Marseille species 649 0 375286 1 0 1 368607 1709 Janthinobacterium svalbardensis species 55508 1 0 species Janthinobacterium agaricidamnosum 1770 850 genus 4 Herminiimonas 303379 3 0 1 358 species Herminiimonas arsenitoxidans 1 1809410 0 204773 1 0 488 species Herminiimonas arsenicoxydans Herbaspirillum 194 genus 8915 1 0 963 6 1424 species Herbaspirillum hiltneri 341045 1 0 1 2624150 0 776 no rank species Herbaspirillum sp. meg3 776 2025949 1 0 80842 1 0 1789 species Herbaspirillum rubrisubalbicans Herbaspirillum frisingense species 2606 0 1 92645 964 1 0 2126 species Herbaspirillum seropedicae 1 0 2 846 47577 Oxalobacter 4 genus Oxalobacter formigenes species 47573 0 847 1 family 770 Burkholderiaceae 131795 84 119060 0 1 41 32008 0 1 genus 3818 Burkholderia 69612 87882 19 0 35485 species group 87883 1 0 species Burkholderia multivorans 2863 1116 species Burkholderia stagnalis 1503054 1 0 5363 Burkholderia cenocepacia species 0 1 95486 0 95485 1 1618 Burkholderia stabilis species 1 60552 0 species Burkholderia vietnamiensis 1452 1 488729 0 763 species Burkholderia metallica Burkholderia pyrrocinia species 1082 0 60550 1 species Burkholderia dolosa 1103 1 152500 0 0 1 488732 Burkholderia diffusa species 1056 770 Burkholderia latens species 0 1 488446 0 265293 1 [Pseudomonas] mesoacidophila species 1237 0 488731 1 968 Burkholderia seminalis species Burkholderia pseudomultivorans species 1513 0 1207504 1 1 152480 0 species Burkholderia ambifaria 1446 2056 species Burkholderia lata 482957 1 0 1 488447 0 species Burkholderia contaminans 776 1 101571 0 3765 species Burkholderia ubonensis 0 1 292 Burkholderia cepacia species 5793 species Burkholderia territorii 745 1503055 1 0 species Burkholderia gladioli 3103 1 28095 0 no rank 11934 2613784 11 0 1412 species Burkholderia sp. RPE67 758796 1 0 species Burkholderia sp. YI23 1332 1097668 1 0 0 640510 1 968 Burkholderia sp. CCGE1001 species 1740163 1 0 1048 species Burkholderia sp. Bp7605 0 1468409 1 Burkholderia sp. 2002721687 species 1194 Burkholderia sp. HB1 species 1225 0 1 1678678 species Burkholderia sp. PAMC 26561 828 1795043 1 0 0 416344 1 866 Burkholderia sp. KJ006 species Burkholderia sp. Bp5365 species 1186 0 1 1740162 1 1795874 0 species Burkholderia sp. PAMC 28687 720 640512 1 0 species Burkholderia sp. CCGE1003 1155 1 337 0 3418 species Burkholderia glumae 9838 species group 111527 7 0 2380 species Burkholderia pseudomallei 28450 1 0 1381 Burkholderia oklahomensis species 0 342113 1 57975 1 0 2397 species Burkholderia thailandensis 13373 1 0 769 species Burkholderia mallei 1 1637837 0 989 species Burkholderia sp. MSMB0266 1637831 1 0 species Burkholderia sp. MSMB617WGS 818 0 1 1637841 Burkholderia sp. MSMB0852 species 1104 0 1 41899 2016 Burkholderia plantarii species genus 535 0 2571159 1 Paraburkholderia rhizoxinica species 535 0 1 412963 0 1827195 1 1681 genus 0 758793 1 Burkholderia sp. RPE64 species 1681 44013 4 1 0 551 4 genus Polynucleobacter 234 Polynucleobacter duraquae species 0 1835254 1 0 1 576611 Polynucleobacter asymbioticus species 182 species Polynucleobacter necessarius 131 1 576610 0 18946 genus 818 Cupriavidus 106589 9 0 1 2112 Cupriavidus basilensis species 0 1 68895 0 1 367825 Cupriavidus sp. USMAA1020 species 2390 0 1 106590 3544 Cupriavidus necator species 2066 Cupriavidus pinatubonensis species 0 1 248026 2 2640874 0 no rank 4858 2623 species Cupriavidus sp. USMAA2-4 1 876364 0 2235 Cupriavidus sp. USMAHM13 species 0 1 1389192 0 82541 1 1926 Cupriavidus gilardii species 0 119219 1 Cupriavidus metallidurans species 1232 Ralstonia genus 225 13776 0 1 5 48736 1 105219 0 1691 species Ralstonia mannitolilytica 190721 1 0 species Ralstonia insidiosa 1761 2473 species Ralstonia pickettii 1 329 0 7626 Ralstonia solanacearum species 0 1 305 0 1 93217 10 10479 Pandoraea genus 135 913 Pandoraea faecigallinarum species 0 1 656179 573737 1 0 species Pandoraea oxalativorans 1179 0 1 656178 1357 Pandoraea vervacti species Pandoraea pulmonicola species 1344 0 93221 1 0 93219 1 1394 Pandoraea norimbergensis species 1232 species Pandoraea sputorum 1 93222 0 1 93218 0 763 species Pandoraea apista 0 1 93220 1243 Pandoraea pnomenusa species Pandoraea thiooxydans species 919 0 445709 1 0 1 12 1822464 Paraburkholderia genus 390 15445 0 261302 1 Paraburkholderia phytofirmans species 1172 species Paraburkholderia terrae 1447 1 311230 0 169430 1 0 species Paraburkholderia hospita 1947 0 1 134537 1032 Paraburkholderia fungorum species 0 1 948107 Paraburkholderia sprentiae species 1278 0 252970 1 923 Paraburkholderia phenoliruptrix species 1535 species Paraburkholderia xenovorans 1 36873 0 75105 1 0 species Paraburkholderia caribensis 2004 no rank 1045 0 2615204 1 0 1 1926494 1045 Paraburkholderia sp. SOS3 species Paraburkholderia phymatum species 1543 0 148447 1 1129 Paraburkholderia aromaticivorans species 0 1 2026199 14180 Nitrosomonadales order 102 0 1 43 32003 1475 family 4 2772226 0 2 935200 0 1 576 genus 38 Sulfuricella 538 species Sulfuricella denitrificans 1 649841 0 899 Sulfuriferula genus 64 0 1 2 1778653 2637784 1 0 no rank 835 1 1985873 0 835 species Sulfuriferula sp. AH1 3908 16 family Nitrosomonadaceae 206379 12 1 0 2100 genus 4 Nitrosospira 35798 4 0 1 1055 species Nitrosospira briensis 1 35799 0 0 1231 1 619 Nitrosospira multiformis species Nitrosospira lacus species 422 0 1288494 1 genus 27 Nitrosomonas 1792 914 7 0 1 1 916 0 species Nitrosomonas eutropha 266 species Nitrosomonas europaea 304 915 1 0 0 2 2609265 no rank 540 299 species Nitrosomonas sp. Is79A3 1 261292 0 0 153948 1 241 Nitrosomonas sp. AL212 species 1 44574 0 species Nitrosomonas communis 447 208 species Nitrosomonas ureae 44577 1 0 1 0 5 90627 1907 Gallionellaceae 82 family 11 genus Gallionella 1002 96 2 1 0 991 species Gallionella capsiferriformans 370405 1 0 Sideroxydans 12 genus 823 1 0 2 314343 0 63745 1 811 Sideroxydans lithotrophicus species 1 0 2008793 5 2462 Sterolibacteriaceae 89 family 0 1 2 378210 1239 Methyloversatilis genus 16 0 2639971 1 no rank 1223 1842540 1 0 species Methyloversatilis sp. RAC08 1223 1054211 2 0 1 genus 5 Sulfuritalea 1134 748811 1 0 1129 species Sulfuritalea hydrogenivorans 2957 Methylophilaceae family 18 0 1 32011 13 0 1 16 515 genus no rank 515 2630143 1 0 515 Methylophilus sp. TWE2 species 0 1 1662285 3 81682 0 1 870 genus 6 Methylovorus 372 no rank 1 2634027 0 0 887061 1 Methylovorus sp. MP688 species 372 Methylovorus glucosotrophus species 492 0 266009 1 10 genus Methylobacillus 669 2 404 1 0 0 405 1 Methylobacillus flagellatus species 659 1 0 1679002 3 301 Candidatus Methylopumilus 1 genus 0 1 1581557 Candidatus Methylopumilus planktonicus species 146 0 1 1581680 154 Candidatus Methylopumilus turicensis species 0 1 3 359407 584 Methylotenera genus 11 450 species Methylotenera mobilis 1 359408 0 Methylotenera versatilis species 123 0 1 1055487 3 2008790 0 1 1369 family 111 Thiobacillaceae 2 919 0 1 genus 18 Thiobacillus 1258 1240 species Thiobacillus denitrificans 36861 1 0 1 0 206351 36 Neisseriales 472 order 28513 1 0 13 1499392 Chromobacteriaceae 247 family 15407 genus 76 Laribacter 1634 168470 2 0 1 species Laribacter hongkongensis 1558 168471 1 0 187 2 0 1 genus 4 Aquaspirillum 1277 1273 no rank 1 2620219 0 0 1938604 1 1273 Aquaspirillum sp. LM1 species 90153 4 0 8835 no rank 1 0 535 4 8835 Chromobacterium 174 genus species Chromobacterium violaceum 2691 1 536 0 no rank 2586 1 2641838 0 1 2059672 0 2586 species Chromobacterium sp. ATCC 53434 1108595 1 0 species Chromobacterium vaccinii 3384 2 568394 0 1 genus 9 Pseudogulbenkiania 2032 no rank 2023 0 1 2642558 0 748280 1 Pseudogulbenkiania sp. NH8B species 2023 1 0 885864 2 1382 Jeongeupia 74 genus no rank 1308 0 2619593 1 Jeongeupia sp. USM3 species 1308 0 1 1906741 12634 Neisseriaceae family 91 0 1 22 481 genus 171 71 1 0 0 72 1 171 Simonsiella muelleri species Neisseria genus 216 9627 0 1 12 482 1 488 0 678 species Neisseria mucosa 0 1 28091 Neisseria weaveri species 480 486 1 0 924 species Neisseria lactamica 0 1 485 Neisseria gonorrhoeae species 426 2075 species Neisseria meningitidis 487 1 0 1 495 0 611 species Neisseria elongata 1 1853278 0 species Neisseria sp. 10023 945 490 1 0 666 species Neisseria sicca 0 326523 1 Neisseria zoodegmatis species 888 no rank 1718 0 2623750 2 1 655307 0 1361 species Neisseria sp. KEM232 1 1853276 0 species Neisseria sp. 10022 357 0 1 2 538 894 Eikenella genus 18 1 539 0 876 species Eikenella corrodens 1 421605 0 no rank 231 231 species Neisseriaceae bacterium DSM 100970 2052837 1 0 2 genus Snodgrassella 446 2 1193515 1 0 Snodgrassella alvi species 444 0 1 1196083 3 59 0 1 genus 18 Vitreoscilla 1174 no rank 210 0 1 2627922 210 Vitreoscilla sp. C1 species 0 1 96942 0 1 63 946 Vitreoscilla filiformis species 206389 22 1 0 21962 290 order Rhodocyclales family 449 Zoogloeaceae 16023 12 2008794 0 1 0 1 5 12960 6229 Azoarcus genus 144 Azoarcus olearius species 1161 0 418699 1 3692 no rank 0 2629479 2 species Azoarcus sp. KH32C 1819 1 748247 0 198107 1 0 1873 species Azoarcus sp. CIB 1 2067960 0 1232 species Azoarcus sp. SY39 1 0 6 33057 9345 Thauera 255 genus 2 2609274 0 4235 no rank 2153 species Thauera sp. K11 2005884 1 0 2082 Thauera sp. MZ1T species 0 1 85643 59405 1 0 1525 species Thauera aromatica 1134435 1 0 1930 species Thauera humireducens 0 1 96773 Thauera chlorobenzoica species 1400 1013 Azonexaceae family 15 0 1 3 2008795 998 Dechloromonas 41 genus 1 0 2 73029 1 259537 0 957 species Dechloromonas aromatica 4636 family 56 Rhodocyclaceae 6 75787 0 1 2 146937 1 0 2174 24 genus Azospira 146939 1 0 species Azospira oryzae 2150 Aromatoleum genus 14 1471 0 1 2 551759 1457 species Aromatoleum aromaticum 551760 1 0 75788 1 0 no rank 935 1898103 1 0 species Rhodocyclaceae bacterium 935 33809 2 0 1351 no rank 1184 species Betaproteobacteria bacterium GR16-43 1904640 1 0 167 beta proteobacterium CB species 0 1 543913 subphylum 200387 68525 196 0 1 0 29547 70 Epsilonproteobacteria 135 class 50433 636 Nautiliales 2 order 1 0 235899 5 family 239 0 2795691 1 genus 239 0 269258 1 1 2624044 0 no rank 239 239 species Nitratiruptor sp. SB155-2 1 387092 0 3 family Nautiliaceae 395 3 224467 1 0 392 genus 11 Nautilia 191291 2 0 1 381 Nautilia profundicola species 0 1 244787 1 0 64 213849 49662 Campylobacterales 1629 order 1094 family 2771471 4 0 genus 2 Sulfurimonas 737 202746 3 0 1 species Sulfurimonas denitrificans 192 1 39766 0 0 1 202747 Sulfurimonas autotrophica species 543 0 286130 1 357 genus 357 species Sulfuricurvum kujiense 1 148813 0 1567 family 0 2771472 4 269260 1 0 genus 672 0 269261 1 Nitratifractor salsuginis species 672 Sulfurovum genus 6 895 0 1 265570 3 2646778 1 0 450 no rank 450 species Sulfurovum sp. NBC37-1 1 387093 0 439 Sulfurovum lithotrophicum species 0 206403 1 14 72293 1 0 13 family Helicobacteraceae 3578 0 1 209 12 Helicobacter genus 9 3315 37372 1 0 species Helicobacter bilis 218 212 1 0 103 species Helicobacter acinonychis 1133 species Helicobacter pylori 1 210 0 0 2593540 1 no rank 160 0 222136 1 Helicobacter sp. MIT 01-6242 species 160 0 1 76936 Helicobacter typhlonius species 121 1 214 0 420 species Helicobacter felis 217 1 0 253 species Helicobacter mustelae 0 213 1 Helicobacter cinaedi species 217 1 138563 0 species Helicobacter cetorum 336 Helicobacter hepaticus species 170 0 1 32025 Helicobacter himalayensis species 175 0 1 1591088 843 1 0 genus 250 250 Wolinella succinogenes species 0 844 1 41794 3029 family Campylobacteraceae 72294 41 1 0 26 194 1 0 34281 392 genus Campylobacter 374106 1 0 275 species Campylobacter cuniculorum 264 Campylobacter hominis species 0 76517 1 198 1 0 species Campylobacter hyointestinalis 286 1 1244531 0 species Campylobacter iguaniorum 338 species Campylobacter jejuni 9521 197 1 0 226 species Campylobacter ureolyticus 827 1 0 species Campylobacter gracilis 443 1 824 0 species Campylobacter fetus 1176 1 196 0 1 28898 0 species Campylobacter helveticus 228 Campylobacter insulaenigrae species 252 0 260714 1 583 Campylobacter lari species 0 201 1 4 2593542 0 no rank 633 Campylobacter sp. RM8964 species 184 0 1 1660074 Campylobacter sp. RM16704 species 141 0 1500960 1 1 1660076 0 140 species Campylobacter sp. RM12175 168 species Campylobacter sp. RM6137 1 1660073 0 0 195 1 Campylobacter coli species 16430 0 1965231 1 Campylobacter pinnipediorum species 388 species Campylobacter subantarcticus 217 497724 1 0 199 1 0 441 species Campylobacter concisus 0 1 522485 135 Campylobacter avium species 0 1 75658 770 Campylobacter lanienae species 1031542 1 0 165 species Campylobacter volucris species Campylobacter sputorum 467 206 1 0 1 200 0 511 species Campylobacter curvus species Campylobacter peloridis 140 1 488546 0 no rank 2520 5 2321108 0 0 2321187 1 genus 600 600 Arcobacter sp. LPB0137 species 0 1 1850254 1177 Arcobacter genus 11 0 1 3 28196 566 species Arcobacter butzleri 1 28197 0 species Arcobacter nitrofigilis 600 28199 1 0 743 no rank 1 2321207 0 0 1 944547 743 Arcobacter sp. L species 1 0 57665 9 Sulfurospirillum 10 genus 1964 311 species Sulfurospirillum cavolei 1 366522 0 243 Sulfurospirillum halorespirans species 0 194424 1 66821 1 0 287 species Sulfurospirillum multivorans 179 Sulfurospirillum deleyianum species 0 65553 1 746 no rank 0 2618290 3 species Sulfurospirillum sp. UCH001 267 1581011 1 0 species Sulfurospirillum sp. JPD-1 252 220622 1 0 0 1 1986224 227 Sulfurospirillum sp. SL2-1 species 44674 1 0 species Sulfurospirillum barnesii 188 149954 class 537 Deltaproteobacteria 126 28221 0 1 539 2 order Desulfurellales 213113 5 1 0 family 537 0 4 117942 2 84404 0 1 221 genus 9 Hippea species Hippea maritima 212 84405 1 0 316 9 genus Desulfurella 33001 2 1 0 307 species Desulfurella acetivorans 33002 1 0 1 0 453227 4 Desulfarculales 37 order 3178 453228 3 0 1 3141 family 47 Desulfarculaceae Desulfarculus 56 genus 3094 1 0 2 453229 3038 species Desulfarculus baarsii 453230 1 0 0 1 213462 11 Syntrophobacterales order 14 3221 3 213465 1 0 27 family Syntrophobacteraceae 1137 1110 Syntrophobacter 3 genus 1 0 2 29526 0 119484 1 1107 Syntrophobacter fumaroxidans species 2070 3 family Syntrophaceae 213468 7 1 0 Syntrophus genus 3 715 0 1 2 43773 316277 1 0 712 species Syntrophus aciditrophicus 0 1 60892 2 529 Desulfobacca genus 2 60893 1 0 species Desulfobacca acetoxidans 527 1 0 2 2357 Desulfomonile 3 genus 823 Desulfomonile tiedjei species 820 0 2358 1 42676 Desulfovibrionales 295 order 1 0 25 213115 31 family Desulfomicrobiaceae 3209 4 213116 1 0 3178 genus 26 Desulfomicrobium 3 898 0 1 Desulfomicrobium orale species 1660 0 1 132132 1 899 0 species Desulfomicrobium baculatum 1492 786 Desulfohalobiaceae family 2 0 1 213117 2 0 1 45662 genus 784 784 Desulfohalobium retbaense species 0 45663 1 194924 18 0 1 38386 family 401 Desulfovibrionaceae 0 1 2582840 2007 genus 873 1 0 2007 species Desulfovibrio africanus genus 927 0 1 2794998 0 1 880 Desulfovibrio salexigens species 927 0 1 872 9 25646 Desulfovibrio genus 280 5240 species Desulfovibrio desulfuricans 876 1 0 1 184917 0 2746 species Desulfovibrio magneticus 0 1 881 Desulfovibrio vulgaris species 6043 no rank 1474 1 2593640 0 0 1 631220 1474 Desulfovibrio sp. G11 species 0 1725232 1 507 Candidatus Desulfovibrio trichonymphae species 1422 species Desulfovibrio alaskensis 58180 1 0 4621 species Desulfovibrio piger 901 1 0 44742 1 0 3313 species Desulfovibrio fairfieldensis genus 80 Pseudodesulfovibrio 8822 4 2035811 0 1 1 1716143 0 species Pseudodesulfovibrio indicus 4437 0 57320 1 Pseudodesulfovibrio profundus species 1106 species Pseudodesulfovibrio aespoeensis 3199 182210 1 0 0 1 41707 2 Lawsonia genus 9 583 0 29546 1 574 Lawsonia intracellularis species 1 0 213118 18 9542 Desulfobacterales 81 order 26 family Desulfobulbaceae 3647 9 213121 1 0 893 2 0 1 genus 13 Desulfobulbus 1625 species Desulfobulbus sp. ORNL 1612 1 1986146 0 355 Desulfotalea 2 genus 1 0 2 109168 353 species Desulfotalea psychrophila 1 84980 0 2 427922 0 1 1158 genus 6 Desulfurivibrio 1152 Desulfurivibrio alkaliphilus species 0 427923 1 2 53318 1 0 483 2 genus Desulfocapsa 481 Desulfocapsa sulfexigens species 0 1 65555 Desulfobacteraceae 30 family 5814 1 0 8 213119 719 genus 1 28222 0 0 1 28223 719 Desulfobacula toluolica species 3065 Desulfococcus genus 10 0 1 896 3 1075 species Desulfococcus multivorans 1 897 0 0 1 181663 Desulfococcus oleovorans species 1980 1113 Desulfatibacillum genus 2 0 1 218207 2 0 259354 1 Desulfatibacillum alkenivorans species 1111 887 genus 1 2295 0 1 2296 0 887 species Desulfobacterium autotrophicum 0 1 69541 24 29915 Desulfuromonadales order 369 1 0 213421 9 Desulfuromonadaceae 263 family 9935 Pelobacter 44 genus 5585 1 0 18 5 2341 Pelobacter propionicus species 0 29543 1 1007 Pelobacter acetylenicus species 0 29542 1 852 no rank 0 2620299 1 species Pelobacter sp. SFB93 852 1842532 1 0 1341 species Pelobacter carbinolicus 1 19 0 3 890 1 0 4087 35 genus Desulfuromonas 1966 no rank 2614637 1 0 1823759 1 0 species Desulfuromonas sp. DDH964 1966 0 1603606 1 Desulfuromonas soudanensis species 2086 Geobacteraceae family 249 19611 0 1 14 213422 0 1 11 28231 Geobacter genus 327 17981 0 1203471 1 1287 Geobacter daltonii species species Geobacter pickeringii 2307 1 345632 0 1988 species Geobacter anodireducens 1340425 1 0 Geobacter sulfurreducens species 1518 0 35554 1 species Geobacter uraniireducens 1541 1 351604 0 4542 no rank 0 2627627 2 2167 species Geobacter sp. M21 1 443144 0 1 443143 0 2375 species Geobacter sp. M18 1459 species Geobacter lovleyi 313985 1 0 28232 1 0 species Geobacter metallireducens 1329 0 225194 1 1683 Geobacter bemidjiensis species 1381 3 genus Geoalkalibacter 2 392332 1 0 0 483547 1 Geoalkalibacter subterraneus species 1378 970 order Myxococcales 60346 29 38 1 0 2689 suborder 224462 3 0 1 0 224464 3 2689 Kofleriaceae 27 family 162027 2 1 0 12 genus Haliangium 2662 0 80816 1 Haliangium ochraceum species 2650 26 80811 0 45248 suborder family 220 Myxococcaceae 21335 9 31 0 1 13828 Myxococcus genus 713 0 1 32 5 2244 species Myxococcus stipitatus 83455 1 0 0 1 1297742 Myxococcus hansupus species 2167 0 34 1 Myxococcus xanthus species 2528 Myxococcus fulvus species 6176 0 33 1 Corallococcus genus 298 7287 0 1 3 83461 Myxococcus macrosporus species 3410 0 1 35 3579 Corallococcus coralloides species 0 1 184914 5 1524215 1 0 202 family Anaeromyxobacteraceae 9907 9705 Anaeromyxobacter genus 167 0 1 161492 4 161493 1 0 4108 species Anaeromyxobacter dehalogenans 0 2 2620896 no rank 5430 species Anaeromyxobacter sp. K 2915 1 447217 0 404589 1 0 species Anaeromyxobacter sp. Fw109-5 2515 Vulgatibacteraceae 73 family 1323 1 0 1524213 3 Vulgatibacter genus 70 1250 0 1 1524214 2 species Vulgatibacter incomptus 1180 1391653 1 0 9 39 1 0 382 family Archangiaceae 12683 genus 51 Stigmatella 2577 40 2 0 1 0 41 1 Stigmatella aurantiaca species 2526 Cystobacter genus 79 2995 0 1 2 42 Cystobacter fuscus species 2916 0 1 43 2865 genus 14 Melittangium 2 44 0 1 Melittangium boletus species 2851 0 83453 1 3864 13 genus Archangium 47 2 1 0 1 48 0 species Archangium gephyra 3851 0 80812 8 suborder 11439 3 1055686 1 0 150 family Sandaracinaceae 2393 2243 25 genus Sandaracinus 2 1055688 1 0 1 927083 0 species Sandaracinus amylolyticus 2218 Polyangiaceae 53 family 9046 1 0 49 5 164 genus Sorangium 7221 2 39643 1 0 7057 species Sorangium cellulosum 56 1 0 1772 Chondromyces 5 genus 1 0 50 2 1767 Chondromyces crocatus species 0 1 52 455413 Alphaproteobacteria class 1728 0 1 552 28211 0 1 1921002 6 Holosporales order 1 492 125 family 1 2100208 0 125 genus 1 1509243 0 0 1 1509244 Candidatus Nucleicultrix amoebiphila species 125 234 family 44746 1 0 204454 1 0 234 no rank endosymbiont of Acanthamoeba sp. UWC8 species 234 0 1 86106 1 family Candidatus Paracaedibacteraceae 132 1777752 3 1 0 Candidatus Paracaedibacter genus 11 131 0 1 2 1521255 Candidatus Paracaedibacter acanthamoebae species 120 0 91604 1 order 2 Pelagibacterales 708 7 54526 0 1 0 1 5 1655514 574 Pelagibacteraceae family 3 0 198251 2 genus 305 2647897 1 0 no rank 108 1002672 1 0 108 species Candidatus Pelagibacter sp. IMCC9063 0 198252 1 197 Candidatus Pelagibacter ubique species no rank 266 2 1655516 0 alpha proteobacterium HIMB5 species 158 0 1 859653 alpha proteobacterium HIMB59 species 108 0 744985 1 2045213 1 0 132 genus 132 species Candidatus Fonsibacter ubiquis 1925548 1 0 1 0 255473 4 Parvularculales 6 order 276 270 Parvularculaceae 3 family 1 0 255474 3 Parvularcula 1 genus 267 1 0 208215 2 0 208216 1 Parvularcula bermudensis species 266 order 1394 2800060 5 0 5 69657 0 1 1394 family 31 Hyphomonadaceae genus 15 Hyphomonas 1114 3 85 0 1 81032 1 0 701 species Hyphomonas neptunium 398 no rank 0 2630699 1 398 Hyphomonas sp. Mor2 species 0 1906738 1 0 1 2723 249 genus species Hirschia baltica 249 1 2724 0 202210 order 2040 Rhizobiales 209 356 0 1 119045 15 0 1 23559 family 161 Methylobacteriaceae 13300 Methylobacterium 627 genus 1 0 9 407 Methylobacterium nodulans species 1327 0 1 114616 418223 1 0 1488 species Methylobacterium phyllosphaerae 2615210 3 0 4983 no rank Methylobacterium sp. C1 species 1258 0 1 1479019 0 925818 1 Methylobacterium sp. AMS5 species 1789 1 426117 0 1936 species Methylobacterium sp. 4-46 1369 species Methylobacterium radiotolerans 31998 1 0 1985 species Methylobacterium aquaticum 1 270351 0 species Methylobacterium oryzae 1521 1 334852 0 1397 genus 25 Microvirga 2 186650 0 1 1882682 1 0 species Microvirga ossetica 1372 3 2282523 0 genus 8701 2797 species Methylobacterium populi 1 223967 0 4470 species Methylobacterium extorquens 408 1 0 1434 species Methylobacterium zatmanii 29429 1 0 0 1 335928 7 5841 Xanthobacteraceae family 115 1916 Starkeya genus 113 0 1 2 152053 0 1 921 Starkeya novella species 1803 279 2 0 1 1736 genus 18 Xanthobacter 280 1 0 species Xanthobacter autotrophicus 1718 2074 genus 31 Azorhizobium 2 6 0 1 0 7 1 2043 Azorhizobium caulinodans species 0 1 45401 19 14073 Hyphomicrobiaceae family 134 1 0 2 29407 Rhodoplanes 38 genus 1838 0 2619116 1 no rank 1800 674703 1 0 1800 species Rhodoplanes sp. Z2-YC6860 81 4 0 1 genus 83 Hyphomicrobium 3565 Hyphomicrobium denitrificans species 1037 0 1 53399 no rank 1241 0 1 2619925 1241 Hyphomicrobium sp. MC1 species 0 1 717785 1 1427356 0 species Hyphomicrobium nitrativorans 1204 4 genus Rhodomicrobium 1201 1068 2 1 0 1069 1 0 species Rhodomicrobium vannielii 1197 1482 Blastochloris genus 65 0 1 2 59282 species Blastochloris viridis 1417 1079 1 0 4530 Devosia genus 39 0 1 4 46913 no rank 4491 196773 3 0 0 2083786 1 1102 Devosia sp. I507 species 1400 Devosia sp. A16 species 0 1736675 1 1 1643450 0 species Devosia sp. H5989 1989 Filomicrobium 6 genus 434 1 0 2 119044 1 1608628 0 species Candidatus Filomicrobium marinum 428 Pelagibacterium genus 5 889 0 1 1082930 2 0 531813 1 Pelagibacterium halotolerans species 884 6105 53 family Brucellaceae 20 118882 1 0 2777 Brucella genus 1142 0 1 14 234 0 1 120576 Brucella pinnipedialis species 137 0 4 2632610 no rank 610 213 Brucella sp. 09RB8910 species 0 1844051 1 1 1149952 0 species Brucella sp. 09RB8471 194 0 1891098 1 Brucella sp. 2002734562 species 45 Brucella sp. 141012304 species 158 0 1 1885919 211 Brucella vulpis species 0 981386 1 0 1 120577 Brucella ceti species 121 0 1 235 48 Brucella abortus species species Brucella microti 62 1 444163 0 192 species Brucella suis 29461 1 0 1 236 0 species Brucella ovis 54 1 29459 0 75 species Brucella melitensis species Brucella canis 125 1 36855 0 83 genus Ochrobactrum 3275 528 5 1 0 0 529 1 849 Ochrobactrum anthropi species 0 1 419475 Ochrobactrum pseudogrignonense species 836 Ochrobactrum pituitosum species 751 0 1 571256 271865 1 0 756 species Ochrobactrum sp. A44 3210 Bartonellaceae 5 family 1 0 772 18 genus 57 Bartonella 3205 773 17 0 1 1 38323 0 species Bartonella henselae 103 101 Bartonella australis species 0 388640 1 species Bartonella tribocorum 191 1 85701 0 0 1 33045 Bartonella grahamii species 276 0 774 1 Bartonella bacilliformis species 186 1 56426 0 species Bartonella clarridgeiae 181 1 1686310 0 species Bartonella apis 880 117 species Bartonella ancashensis 1 1318743 0 874 no rank 0 2645622 6 0 1933910 1 79 Bartonella sp. A1379B species species Bartonella sp. Raccoon60 74 1933912 1 0 141 species Bartonella sp. 1-1C 515256 1 0 1 1933906 0 species Bartonella sp. JB15 231 118 species Bartonella sp. WD16.2 1 1933904 0 species Bartonella sp. JB63 231 1 1933907 0 Bartonella quintana species 124 0 803 1 0 1 33047 Bartonella vinsonii species 115 19852 Phyllobacteriaceae family 171 0 1 20 69277 14 genus Aminobacter 2686 2 31988 1 0 2672 Aminobacter aminovorans species 0 1 83263 genus 336 Mesorhizobium 13846 9 68287 0 1 species Mesorhizobium opportunistum 2021 593909 1 0 39645 1 0 species Mesorhizobium ciceri 2393 0 1670800 1 Mesorhizobium sp. B7 species 1218 Mesorhizobium australicum species 1125 0 1 536018 1 71433 0 2426 species Mesorhizobium amorphae 381 1 0 1784 species Mesorhizobium loti no rank 1164 0 1 325217 0 278153 1 1164 Mesorhizobium sp. WSM1497 species 0 1 2066070 1379 Mesorhizobium japonicum species Phyllobacterium genus 21 847 0 1 2 28100 1867719 1 0 826 species Phyllobacterium zundukense 0 1 2 274591 Hoeflea genus 3 781 778 no rank 0 1 2614931 Hoeflea sp. IMCC20628 species 778 0 1620421 1 0 1 245876 2 Nitratireductor genus 7 516 Nitratireductor basaltis species 509 0 472175 1 1005 Chelativorans 9 genus 1 0 2 449972 1 2643807 0 996 no rank 996 Chelativorans sp. BNC1 species 0 266779 1 4 2036754 0 1 3003 family 12 Chelatococcaceae 130 genus Chelatococcus 2991 28209 3 1 0 1755 no rank 0 2638111 1 1702325 1 0 species Chelatococcus sp. CO-6 1755 0 444444 1 1106 Chelatococcus daeguensis species 0 1 255475 7 Aurantimonadaceae family 30 7405 6005 156 genus Martelella 4 293088 1 0 293089 1 0 species Martelella mediterranea 2013 no rank 1919 2629616 1 0 species Martelella sp. AD-3 1919 1 686597 0 species Martelella endophytica 1917 1486262 1 0 414371 2 1 0 4 genus Aureimonas 1370 2615206 1 0 1366 no rank Aureimonas sp. AU20 species 1366 0 1 1349819 3999 no rank 6 119042 0 2110 Hartmannibacter 8 genus 1 0 1572860 2 1482074 1 0 2102 species Hartmannibacter diazotrophicus 0 1 2 1484898 Methyloceanibacter genus 13 1044 Methyloceanibacter caenitepidi species 1031 0 1384459 1 845 8 genus Pseudorhodoplanes 1734920 2 1 0 1 1235591 0 species Pseudorhodoplanes sinuspersici 837 Rhodobiaceae 5 family 892 1 0 3 119043 2 256616 1 0 82 genus Parvibaculum 887 1 256618 0 species Parvibaculum lavamentivorans 805 family 591 Rhizobiaceae 64597 52 82115 0 1 2 323620 0 1 2760 genus 4 Shinella 2756 no rank 0 1 2643062 Shinella sp. HZN7 species 2756 0 879274 1 10 227292 0 14311 no rank 12128 Sinorhizobium genus 276 0 1 28105 7 1 110321 0 946 species Sinorhizobium medicae 3195 species group 1 663276 0 3195 species Sinorhizobium fredii 380 1 0 0 194963 1 Sinorhizobium americanum species 1976 no rank 3066 0 2613772 2 1 1842534 0 species Sinorhizobium sp. RAC02 1800 794846 1 0 species Sinorhizobium sp. CCBAU 05631 1266 2669 Sinorhizobium meliloti species 0 382 1 106591 3 1 0 42 genus Ensifer 2183 0 1 716925 865 Ensifer sojae species 1276 Ensifer adhaerens species 0 1 106592 34019 6 1 0 583 42 genus Liberibacter species Candidatus Liberibacter americanus 167 309868 1 0 67 species Candidatus Liberibacter asiaticus 34021 1 0 34020 1 0 85 species Candidatus Liberibacter africanus 0 1 1273132 125 Liberibacter crescens species 97 species Candidatus Liberibacter solanacearum 1 556287 0 46352 no rank 227290 33 0 Rhizobium 2020 genus 32042 1 0 24 379 384 1 0 species Rhizobium leguminosarum 8025 Rhizobium etli species 3826 0 1 29449 3327 species Rhizobium phaseoli 1 396 0 0 2613769 18 no rank 12185 771 species Rhizobium sp. IRBG74 424182 1 0 1 1703966 0 species Rhizobium sp. N731 204 0 2020311 1 Rhizobium sp. Kim5 species 816 0 1914541 1 707 Rhizobium sp. Y9 species species Rhizobium sp. NT-26 828 1 1125847 0 species Rhizobium sp. NXC24 1004 2048897 1 0 species Rhizobium sp. TAL182 209 1 2020313 0 1070 species Rhizobium sp. 10195 2028343 1 0 1 1981173 0 861 species Rhizobium sp. NXC14 2020312 1 0 species Rhizobium sp. CIAT894 1298 0 1301032 1 881 Rhizobium sp. IE4771 species 1 1703962 0 1 species Rhizobium sp. N1341 species Rhizobium sp. ACO-34A 1086 1 1571470 0 1703960 1 0 species Rhizobium sp. N113 1 0 1 1703961 Rhizobium sp. N1314 species 204 0 1 1703969 1463 Rhizobium sp. N324 species 0 1869170 1 Rhizobium sp. S41 species 780 1703967 1 0 1 species Rhizobium sp. N741 967 Rhizobium tropici species 0 1 398 1 56730 0 1692 species Rhizobium gallicum 2832 Neorhizobium 14 genus 1 0 1525371 2 species Neorhizobium galegae 2818 1 399 0 0 1 7 357 Agrobacterium genus 164 11478 2035 species Agrobacterium rhizogenes 1 359 0 373 1 0 1224 species Agrobacterium vitis 5128 species group 0 2 1183400 1 358 0 3947 species Agrobacterium tumefaciens 1176649 1 0 species Agrobacterium fabrum 1181 2927 no rank 0 2632611 2 0 861208 1 Agrobacterium sp. H13-3 species 1312 1615 Agrobacterium sp. RAC06 species 0 1842536 1 Beijerinckiaceae 2 family 1467 1 0 45404 5 0 1 120652 2 Methylocella genus 9 927 199596 1 0 species Methylocella silvestris 918 538 1 genus Beijerinckia 2 532 1 0 0 533 1 537 Beijerinckia indica species 26 41294 0 1 43436 family 598 Bradyrhizobiaceae 1 0 911 3 Nitrobacter 15 genus 1465 0 913 1 Nitrobacter winogradskyi species 604 0 1 912 Nitrobacter hamburgensis species 846 Variibacter 85 genus 913 1 0 1649510 2 828 species Variibacter gotjawalensis 1 1333996 0 1132 Oligotropha genus 78 0 1 2 40136 1 40137 0 1054 species Oligotropha carboxidovorans Bradyrhizobium 611 genus 22812 1 0 374 11 Bradyrhizobium icense species 1098 0 1 1274631 3559 Bradyrhizobium diazoefficiens species 0 1355477 1 1 375 0 species Bradyrhizobium japonicum 3727 44255 1 0 species Bradyrhizobium oligotrophicum 2158 0 2631580 6 11659 no rank 2057741 1 0 1764 species Bradyrhizobium sp. SK17 0 1 1223566 Bradyrhizobium sp. CCGE-LA001 species 1486 2038 Bradyrhizobium sp. species 0 376 1 2216 species Bradyrhizobium sp. ORS 278 114615 1 0 species Bradyrhizobium sp. BTAi1 2279 1 288000 0 115808 1 0 species Bradyrhizobium sp. ORS 285 1876 85413 5 1 0 178 genus Bosea 7581 no rank 5398 3 2653178 0 1792307 1 0 species Bosea sp. PAMC 26642 1569 0 1 2015316 Bosea sp. AS-1 species 1591 1 1842539 0 species Bosea sp. RAC05 2238 species Bosea vaviloviae 2005 1 1526658 0 2 1073 0 1 genus 79 Rhodopseudomonas 8935 1 1076 0 8856 species Rhodopseudomonas palustris 31993 6 0 1 2731 family 11 Methylocystaceae Methylosinus 18 genus 1186 1 0 2 425 426 1 0 1168 species Methylosinus trichosporium 1534 13 genus Methylocystis 133 3 1 0 no rank 673 2625913 1 0 0 187303 1 Methylocystis sp. SC2 species 673 0 1 655015 848 Methylocystis bryophila species 51 766 1 0 5745 22 order Rickettsiales Candidatus Midichloriaceae family 8 105 0 1 1328881 2 genus 97 0 1 411566 0 234827 1 97 Candidatus Midichloria mitochondrii species 1699067 1 0 183 no rank 0 1 1528098 183 Rickettsiales bacterium Ac37b species 942 21 1 0 1331 2 family Anaplasmataceae 520 Ehrlichia 5 genus 1 0 6 943 410 species group 0 4 106178 0 945 1 91 Ehrlichia chaffeensis species species Ehrlichia ruminantium 163 779 1 0 0 944 1 Ehrlichia canis species 101 55 species Ehrlichia muris 35795 1 0 no rank 105 1 106181 0 391036 1 0 105 species Ehrlichia sp. HF 0 768 3 genus 198 0 1 769 Anaplasma centrale species 35 0 106179 1 64 species group 1 948 0 species Anaplasma phagocytophilum 64 0 770 1 Anaplasma marginale species 99 33993 3 0 genus 195 0 1 950 80 Neorickettsia risticii species 33994 1 0 species Neorickettsia helminthoeca 57 58 species Neorickettsia sennetsu 1 951 0 8 952 0 tribe 416 0 1 953 8 Wolbachia genus 8 416 2640676 7 0 no rank 408 0 1 163164 Wolbachia endosymbiont of Drosophila melanogaster species 43 Wolbachia endosymbiont of Cimex lectularius species 49 0 1 246273 0 77038 1 137 Wolbachia endosymbiont of Drosophila simulans species Wolbachia endosymbiont of Onchocerca ochengi species 26 0 100901 1 1 77551 0 29 species Wolbachia endosymbiont of Onchocerca volvulus 54 species Wolbachia sp. wRi 66084 1 0 1 80849 0 species Wolbachia endosymbiont of Brugia malayi 70 26 775 1 0 4104 4 family Rickettsiaceae 0 33988 24 tribe 3951 761 genus Rickettsia 3764 780 23 1 0 239 species group 0 114292 2 0 782 1 Rickettsia prowazekii species 131 108 species Rickettsia typhi 785 1 0 132 no rank 114295 1 0 337479 1 0 species Rickettsia endosymbiont of Bemisia tabaci 132 17 114277 0 species group 2279 67 species Rickettsia peacockii 1 47589 0 0 787 1 Rickettsia australis species 135 species Rickettsia africae 19 35788 1 0 0 33989 1 65 Rickettsia amblyommatis species 1 783 0 121 species Rickettsia rickettsii species Rickettsia felis 1184 42862 1 0 1 786 0 species Rickettsia akari 252 Rickettsia montanensis species 40 0 1 33991 Rickettsia rhipicephali species 45 0 33992 1 35790 1 0 29 species Rickettsia japonica 0 35792 1 Rickettsia parkeri species 2 1105106 1 0 104 species Rickettsia philipii 18 species Rickettsia conorii 781 1 0 Rickettsia massiliae species 70 0 1 35791 0 226665 1 Rickettsia heilongjiangensis species 14 109232 1 0 94 species Rickettsia monacensis 20 Rickettsia slovaca species 0 35794 1 1129742 2 0 353 species group 1 33990 0 238 species Rickettsia bellii 115 Rickettsia canadensis species 0 788 1 187 genus 0 1 69474 0 784 1 Orientia tsutsugamushi species 187 genus 149 1 2115980 0 1 2115978 0 149 species Candidatus Phycorickettsia trachydisci 0 7 82117 no rank 5001 1 62654 0 clade 572 genus 572 0 767891 1 0 767892 1 572 Candidatus Puniceispirillum marinum species 1 0 213485 2 Micavibrio 22 genus 598 576 species Micavibrio aeruginosavorus 1 349221 0 1632780 2 0 1 genus 35 Phreatobacter 2153 1868589 1 0 species Phreatobacter sp. S-12 2118 genus 14 Polymorphum 1678 2 991903 0 1 0 991904 1 Polymorphum gilvum species 1664 1156 order 2800059 2 0 1156 family 0 2800061 2 0 1 74317 2 1156 Maricaulis genus 15 1141 Maricaulis maris species 0 74318 1 76619 Rhodobacterales order 384 0 1 88 204455 87 31989 0 1 family 1297 Rhodobacteraceae 76235 0 1579315 1 genus 209 1579316 1 0 209 species Halocynthiibacter arcticus 0 1 3 60136 Sulfitobacter genus 37 2342 1402135 1 0 species Sulfitobacter pseudonitzschiae 841 no rank 1464 196795 1 0 1464 Sulfitobacter sp. AM1-D1 species 0 1 1917485 1 0 5 875170 Celeribacter 25 genus 3622 0 1758178 1 Celeribacter ethanolicus species 848 1397108 1 0 species Celeribacter marinus 394 1243 Celeribacter indicus species 0 1 1208324 1 1411902 0 species Celeribacter manganoxidans 1112 Leisingera genus 40 1310 0 1 191028 2 0 1 133924 Leisingera methylohalidivorans species 1270 9 genus Loktanella 245186 1 0 3010 genus 0 2 263377 2640570 1 0 no rank 1626 species Yangia sp. CCB-MM3 1626 1792508 1 0 0 1 1229727 Thiobacimonas profunda species 1384 Marivivens genus 1 456 0 1 1759396 2 no rank 455 1 2622455 0 455 species Marivivens sp. JLT3646 1 1920883 0 1 0 4 34008 4278 Rhodovulum 84 genus 35806 1 0 species Rhodovulum sulfidophilum 2192 2 2631432 0 no rank 2002 1030 Rhodovulum sp. P5 species 0 1564506 1 972 species Rhodovulum sp. MB263 308754 1 0 1199 Dinoroseobacter genus 2 0 1 309512 2 1197 Dinoroseobacter shibae species 0 215813 1 0 1649279 1 1013 genus 0 1 379347 Ruegeria mobilis species 1013 1 0 3 2433 Roseobacter 4 genus 1057 432 species Roseobacter litoralis 1 42443 0 621 species Roseobacter denitrificans 1 2434 0 2 1609958 1 0 1209 9 genus Confluentimicrobium 2643318 1 0 1200 no rank 1609966 1 0 species Confluentimicrobium sp. EMB200-NS6 1200 1 0 2 360528 1936 Pelagibaca 28 genus species Pelagibaca abyssi 1908 1 1250539 0 0 1 92944 3 2206 Ketogulonicigenium genus 15 Ketogulonicigenium vulgare species 931 0 92945 1 92947 1 0 species Ketogulonicigenium robustum 1260 159345 1 0 909 genus 909 Roseibacterium elongatum species 0 1 159346 genus 3 Roseovarius 873 74030 2 0 1 0 215743 1 870 Roseovarius mucosus species 0 2211641 1 genus 844 Loktanella vestfoldensis species 844 0 245188 1 74032 1 0 895 genus 895 species Antarctobacter heliothermus 74033 1 0 0 1 1284657 492 genus 0 1284658 1 492 Planktomarina temperata species no rank 1338 2 58840 0 449 species Rhodobacteraceae bacterium 1 1904441 0 2033435 1 0 species Rhodobacteraceae bacterium QY30 889 0 1 436357 Thalassococcus genus 4 Paracoccus genus 178 13799 0 1 265 9 1583 species Paracoccus contaminans 1945662 1 0 1964 Paracoccus aminovorans species 0 34004 1 Paracoccus zhejiangensis species 2111 0 1 1077935 1031 species Paracoccus aminophilus 34003 1 0 266 1 0 2103 species Paracoccus denitrificans 147645 1 0 2178 species Paracoccus yeei no rank 933 0 1 246570 1529068 1 0 species Paracoccus sp. BM15 933 1718 species Paracoccus sp. CBA4604 1 2065379 0 874 Tateyamaria 1 genus 1 0 2 299261 873 Tateyamaria omphalii species 0 299262 1 0 1 5 302485 6696 Phaeobacter genus 120 Phaeobacter piscinae species 1746 0 1580596 1 species Phaeobacter porticola 560 1844006 1 0 2146 species Phaeobacter gallaeciensis 60890 1 0 2124 species Phaeobacter inhibens 1 221822 0 0 1 227873 2 2456 Pannonibacter genus 32 species Pannonibacter phragmitetus 2424 121719 1 0 Sagittula 6 genus 1460 1 0 2 58842 0 1 2624628 1454 no rank 1 2009329 0 1454 species Sagittula sp. P11 genus 92 Labrenzia 3025 478070 4 0 1 0 2 2648686 no rank 1850 0 2021862 1 918 Labrenzia sp. VG12 species 1674922 1 0 932 species Labrenzia sp. CP4 1083 Labrenzia aggregata species 0 1 187304 2 1097466 0 1 genus 3 Defluviimonas 1946 0 1 1335048 1943 Defluviimonas alba species Octadecabacter genus 9 1213 0 1 4 53945 species Octadecabacter arcticus 476 1 53946 0 1 1217908 0 468 species Octadecabacter antarcticus 0 1458307 1 Octadecabacter temperatus species 260 317 genus Rhodobacter 7555 5 1060 1 0 1063 1 0 species Rhodobacter sphaeroides 3699 1 1061 0 1471 species Rhodobacter capsulatus 0 2 196779 2068 no rank 0 1 2033869 1045 Rhodobacter sp. CZR27 species 0 1850250 1 Rhodobacter sp. LPB0142 species 1023 1834 17 genus Marinovum 367771 2 1 0 1817 Marinovum algicola species 0 42444 1 97050 3 0 1 genus 11 Ruegeria 2324 no rank 849 2625375 1 0 Ruegeria sp. TM1040 species 849 0 1 292414 0 89184 1 1464 Ruegeria pomeroyi species 285107 1 0 genus 1129 1915078 1 0 1129 species Thioclava nitratireducens 513 genus 1 119541 0 0 441209 1 513 Rhodobaca barguzinensis species Jannaschia 5 genus 903 1 0 188905 2 898 no rank 0 2645469 1 0 290400 1 898 Jannaschia sp. CCS1 species order 2 Magnetococcales 494 3 1191478 0 1 1191479 2 0 492 family Magnetococcus genus 2 492 0 1 162171 2 490 Magnetococcus marinus species 0 1124597 1 order 854 Rhodospirillales 65760 67 204441 0 1 0 1 35 433 24983 Acetobacteraceae family 455 16 genus Asaia 746 2 91914 1 0 1 91915 0 730 species Asaia bogorensis 2 89583 1 0 1296 48 genus Gluconacetobacter species Gluconacetobacter diazotrophicus 1248 1 33996 0 0 1 1602345 2 543 Parasaccharibacter genus 5 species Parasaccharibacter apium 538 1510841 1 0 153497 2 0 1 genus 7 Kozakia 560 species Kozakia baliensis 553 1 153496 0 genus 6 Neoasaia 779 320496 2 0 1 0 320497 1 Neoasaia chiangmaiensis species 773 4532 genus 202 Roseomonas 125216 3 0 1 2535 no rank 1 2617492 0 1 2018065 0 species Roseomonas sp. FDAARGOS_362 2535 0 257708 1 1795 Roseomonas gilardii species 4568 Komagataeibacter 71 genus 1 0 1434011 5 0 1 1177712 585 Komagataeibacter medellinensis species 0 1 265960 1017 Komagataeibacter nataicola species species Komagataeibacter xylinus 2129 28448 1 0 species Komagataeibacter europaeus 766 33995 1 0 145 genus Acidiphilium 2461 522 3 1 0 1 62140 0 species Acidiphilium multivorum 1112 0 1 524 Acidiphilium cryptum species 1204 3 441 1 0 2392 35 genus Gluconobacter 0 1 442 Gluconobacter oxydans species 1507 318683 1 0 species Gluconobacter albidus 850 364409 2 1 0 35 genus Granulibacter 1524 364410 1 0 1489 species Granulibacter bethesdensis 43 genus Acetobacter 5127 434 8 1 0 1 104102 0 species Acetobacter tropicalis 888 0 1633874 1 Acetobacter oryzifermentans species 388 1 1076596 0 642 species Acetobacter persici 1 438 0 1265 species Acetobacter pasteurianus 151157 1 0 subgenus 784 784 Acetobacter aceti species 0 435 1 739 species Acetobacter senegalensis 446692 1 0 65959 1 0 378 species Acetobacter pomorum 765 family Rhodospirillaceae 39923 31 41295 1 0 1363 genus 11 Pararhodospirillum 1612157 2 0 1 Pararhodospirillum photometricum species 1352 0 1084 1 genus 6 Nitrospirillum 2866 1543705 2 0 1 species Nitrospirillum amazonense 2860 1 28077 0 168934 3 1 0 25 genus Thalassospira 1494 0 220697 1 824 Thalassospira xiamenensis species Thalassospira sp. CSC3H3 species 645 0 2048283 1 Magnetospira genus 1 499 0 1 2 1182780 1 2685734 0 498 no rank 1 1288970 0 498 species Magnetospira sp. QH-2 8280 genus 128 Magnetospirillum 5 13134 0 1 84159 1 0 1764 species Magnetospirillum magneticum 0 55518 1 Magnetospirillum gryphiswaldense species 2308 4080 no rank 2617991 2 0 Magnetospirillum sp. XM-1 species 1791 0 1 1663591 species Magnetospirillum sp. ME-1 2289 1 1639348 0 1485 Niveispirillum genus 9 0 1 2 1543704 species Niveispirillum cyanobacteriorum 1476 1612173 1 0 324 Haematospirillum genus 4 0 1 2 1804663 Haematospirillum jordaniae species 320 0 1549855 1 161 genus 1 Candidatus Endolissoclinum 2 1263978 0 1 1 1263979 0 160 species Candidatus Endolissoclinum faulkneri Rhodospirillum 29 genus 4143 1 0 1081 3 1 1085 0 1555 species Rhodospirillum rubrum 0 1 34018 2559 Rhodospirillum centenum species 171436 2 0 1 2122 genus 18 Tistrella 2104 Tistrella mobilis species 0 1 171437 Azospirillum genus 312 16421 0 1 191 5 0 1 192 5310 Azospirillum brasilense species 6167 Azospirillum lipoferum species 0 1 193 528244 1 0 3052 species Azospirillum thiophilum species Azospirillum humicireducens 1580 1 1226968 0 0 1 204458 20 Caulobacterales order 170 24780 1 0 19 76892 24610 Caulobacteraceae 249 family 0 1 6 75 11594 Caulobacter genus 149 155892 1 0 3956 species Caulobacter vibrioides 2294 no rank 0 1 2648921 1 366602 0 species Caulobacter sp. K31 2294 0 69395 1 Caulobacter henricii species 1118 species Caulobacter mirabilis 1834 69666 1 0 Caulobacter segnis species 2243 0 1 88688 76890 2 0 1 genus 10 Asticcacaulis 935 78587 1 0 925 species Asticcacaulis excentricus 2 20 0 1 1812 genus 9 Phenylobacterium 284016 1 0 species Phenylobacterium zucineum 1803 7 41275 0 1 genus 232 Brevundimonas 9435 2622653 3 0 4921 no rank 0 1827469 1 938 Brevundimonas sp. GW460-12-10-14-LB2 species species Brevundimonas sp. DS20 1841 1 1532555 0 0 1938605 1 Brevundimonas sp. LM2 species 2142 Brevundimonas vesicularis species 1265 0 1 41276 0 74313 1 Brevundimonas subvibrioides species 1512 Brevundimonas naejangsanensis species 1505 0 1 588932 0 1 81440 no rank 585 0 1759059 1 585 Caulobacteraceae bacterium OTSz_A_272 species 82 204457 1 0 69050 433 order Sphingomonadales family 786 Sphingomonadaceae 53642 41297 59 0 1 genus 13 Zymomonas 962 2 541 0 1 0 1 542 Zymomonas mobilis species 949 genus 576 2709685 1 0 1 266812 0 576 species Sphingorhabdus flavimaris Blastomonas genus 32 924 0 1 150203 2 892 no rank 2626550 1 0 0 1842535 1 892 Blastomonas sp. RAC04 species 1 0 15 13687 19334 Sphingomonas 404 genus 0 1 152682 Sphingomonas melonis species 1084 0 1560345 1 Sphingomonas panacis species 1625 species Sphingomonas hengshuiensis 1001 1609977 1 0 Sphingomonas sanxanigenens species 1806 0 1 397260 1 93064 0 1080 species Sphingomonas koreensis species 1839 Sphingomonas wittichii 3331 2 160791 0 1 1492 strain Sphingomonas sp. DC-6 1283312 1 0 1745 Sphingomonas taxi species 0 1549858 1 0 196159 6 7258 no rank 0 1 745310 Sphingomonas sp. MM-1 species 1497 746 Sphingomonas sp. KC8 species 0 1 1030157 0 1 1327635 Sphingomonas sp. Cra20 species 839 species Sphingomonas sp. LM7 1398 1938607 1 0 0 1 1390395 Sphingomonas sp. LK11 species 1130 1648 Sphingomonas sp. NIC1 species 0 1961362 1 1241 genus 30 Rhizorhabdus 2 1649486 0 1 Rhizorhabdus dicambivorans species 1211 0 1 1850238 780 genus 1 2685927 0 0 1 1921510 780 Sphingomonas sp. JJ-A5 species Sphingorhabdus genus 10 1034 0 1 1434046 3 no rank 1024 2614947 2 0 497 Sphingorhabdus sp. YGSMI21 species 0 1 2077182 0 1 1806885 Sphingorhabdus sp. M41 species 527 0 1 72173 2 Citromicrobium genus 95 1314 0 1 2630544 no rank 1219 species Citromicrobium sp. JL477 1219 1 1634516 0 315 genus Sphingobium 13411 15 165695 1 0 Sphingobium indicum species 674 0 332055 1 1317 Sphingobium yanoikuyae species 0 1 13690 1104 Sphingobium cloacae species 0 1 120107 Sphingobium herbicidovorans species 805 0 1 76947 0 1332080 1 Sphingobium baderi species 695 Sphingobium japonicum species 947 0 1 332056 no rank 5297 0 6 2611147 650 species Sphingobium sp. EP60837 1 1855519 0 Sphingobium sp. RAC03 species 868 0 1 1843368 407020 1 0 species Sphingobium sp. MI1205 709 1315974 1 0 species Sphingobium sp. TKS 1017 0 484429 1 Sphingobium sp. YBL2 species 1047 Sphingobium sp. SYK-6 species 1006 0 1 627192 1 1673076 0 781 species Sphingobium hydrophobicum 46429 1 0 species Sphingobium chlorophenolicum 1476 5135 genus 44 Novosphingobium 165696 5 0 1 no rank 1264 2644732 1 0 0 1 702113 Novosphingobium sp. PP1Y species 1264 Novosphingobium resinovorum species 1250 0 1 158500 48935 1 0 1230 species Novosphingobium aromaticivorans 1 205844 0 1347 species Novosphingobium pentaromativorans 163 genus Sphingopyxis 8145 165697 10 1 0 784 Sphingopyxis alaskensis species 0 117207 1 0 1 33050 Sphingopyxis macrogoltabida species 1703 1 1515612 0 694 species Sphingopyxis fribergensis 0 1 267128 Sphingopyxis granuli species 989 0 2614943 4 3031 no rank Sphingopyxis sp. MG species 988 0 1 1866325 Sphingopyxis sp. QXT-31 species 990 0 1357916 1 species Sphingopyxis sp. 113P3 916 292913 1 0 Sphingopyxis sp. LPB0140 species 137 0 1 1913578 781 species Sphingopyxis terrae 33052 1 0 335929 22 0 1 14975 family 227 Erythrobacteraceae 2397 Croceicoccus genus 109 0 1 3 1295327 Croceicoccus naphthovorans species 855 0 1 1348774 1433 species Croceicoccus marinus 1 450378 0 genus 1041 0 2800686 2 species Altererythrobacter mangrovi 396 1 1982042 0 Altererythrobacter dongtanensis species 645 0 1 692370 4 361177 0 1 1763 genus 120 Altererythrobacter 583 Altererythrobacter epoxidivorans species 0 1 361183 1267766 1 0 701 species Altererythrobacter atlanticus 359 Altererythrobacter ishigakiensis species 0 476157 1 4519 no rank 0 2800788 6 1041 3 0 1 genus 321 Erythrobacter 2245 0 1112 1 880 Porphyrobacter neustonensis species 1044 Erythrobacter litoralis species 0 39960 1 genus 122 Porphyrobacter 2274 1111 3 0 1 2683265 2 0 no rank 2152 0 1 1896196 Porphyrobacter sp. LM 6 species 1414 species Porphyrobacter HT-58-2 738 1 2023229 0 0 1 2800682 genus 1523 645517 1 0 1523 species Altererythrobacter namhicola 690 genus 2800685 1 0 0 1 543877 Altererythrobacter marensis species 690 0 1855416 2 genus 1605 515 Erythrobacter flavus species 0 1 192812 1090 species Erythrobacter seohaensis 1 266951 0 genus 1210 0 2800681 2 427 Erythrobacter atlanticus species 0 1 1648404 species Erythrobacter gangjinensis 783 1 502682 0 3236 class 6 1807140 0 3236 order 67 Acidithiobacillales 6 225057 0 1 1 0 5 225058 Acidithiobacillaceae 2 family 3169 Acidithiobacillus genus 61 3167 0 1 4 119977 1 920 0 species Acidithiobacillus ferrooxidans 1071 Acidithiobacillus caldus species 779 0 33059 1 Acidithiobacillus ferrivorans species 1256 0 160808 1 phylum 34307 203691 57 0 34307 class 130 Spirochaetia 203692 57 0 1 order 2773 0 1643688 8 8 170 0 1 2773 family 3 Leptospiraceae 171 6 0 1 genus 2 Leptospira 2161 0 1 28452 385 Leptospira alstonii species 313 Leptospira santarosai species 0 1 28183 Leptospira interrogans species 586 0 173 1 Leptospira borgpetersenii species 623 0 1 174 0 172 1 252 Leptospira biflexa species genus 609 0 338321 1 species Turneriella parva 609 1 29510 0 1 0 7 1643686 5232 Brachyspirales 27 order 5205 Brachyspiraceae family 180 0 1 143786 6 29521 5 1 0 5025 213 genus Brachyspira 84377 1 0 species Brachyspira intermedia 876 0 1 84378 484 Brachyspira murdochii species Brachyspira hyodysenteriae species 1508 0 159 1 0 52584 1 Brachyspira pilosicoli species 1944 0 1 41 136 Spirochaetales order 1048 26172 0 1 137 23 22873 Spirochaetaceae family 308 genus 30 Spirochaeta 2222 146 3 0 1 0 1 154 1029 Spirochaeta thermophila species Spirochaeta africana species 1163 0 46355 1 1 1616789 0 744 genus 744 Salinispira pacifica species 0 1 1307761 genus 6 Sediminispirochaeta 1172 1911556 2 0 1 0 55206 1 1166 Sediminispirochaeta smaragdinae species Treponema 217 genus 15106 1 0 157 12 species Treponema paraluiscuniculi 64 1 53435 0 1 158 0 species Treponema denticola 753 1476 Treponema azotonutricium species 0 1 150829 1459 species Treponema putidum 221027 1 0 659 Treponema caldarium species 0 215591 1 167 1 0 5168 species Treponema succinifaciens 1315 species Treponema primitia 88058 1 0 0 160 1 75 Treponema pallidum species no rank 1307 0 1 2638727 1307 Treponema sp. OMZ 838 species 0 1 1539298 454 Treponema pedis species 0 409322 1 2159 species Treponema brennaborense 81028 1 0 3321 Sphaerochaeta genus 41 0 1 399320 4 Sphaerochaeta coccoides species 971 0 1 273376 1520 species Sphaerochaeta globosa 1131703 1 0 789 Sphaerochaeta pleomorpha species 0 1 1131707 17 1643685 0 1 2251 family 17 Borreliaceae 64895 8 0 1 984 genus 26 Borreliella 135 Borreliella afzelii species 0 29518 1 Borreliella bavariensis species 115 0 1 664662 383 species Borreliella garinii 29519 1 0 84 Borreliella burgdorferi species 0 139 1 62088 1 0 87 species Borreliella valaisiana 0 1 1674146 Borrelia mayonii species 82 0 64897 1 72 Borreliella bissettii species 21 genus Borrelia 1250 8 138 1 0 species Borrelia miyamotoi 211 47466 1 0 Borrelia anserina species 96 0 1 143 1 44449 0 122 species Borrelia recurrentis species Borrelia hermsii 153 140 1 0 Borrelia duttonii species 127 0 1 40834 142 1 0 species Borrelia turicatae 247 273 species Borrelia parkeri 141 1 0 0 13 40117 4618 phylum 1 0 13 203693 4618 Nitrospira 32 class 4586 order 49 Nitrospirales 12 189778 0 1 Nitrospiraceae 23 family 4537 1 0 189779 11 4 179 1 0 1057 1 genus Leptospirillum 261386 1 0 species group 318 318 Leptospirillum ferriphilum species 0 178606 1 415 species group 1 655606 0 415 Leptospirillum ferrooxidans species 0 1 180 261385 1 0 323 species group 0 1660083 1 323 Leptospirillum sp. Group II 'CF-1' species 5 1234 0 1 genus 43 Nitrospira 3020 537 Nitrospira defluvii species 0 1 330214 Candidatus Nitrospira inopinata species 752 0 1715989 1 0 42253 1 Nitrospira moscoviensis species 1084 0 1 1325564 604 Nitrospira japonica species 1 28261 0 437 genus 0 1 28262 437 Thermodesulfovibrio yellowstonii species phylum 494 0 1 2138240 1 2138243 0 494 class 494 order 2138246 1 0 2138247 1 0 family 494 494 genus 0 1 68335 0 35786 1 494 Coprothermobacter proteolyticus species