members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 20767 30 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 2673758 4535 superkingdom 21 0 1 Bacteria 4231 2 2591931 clade 0 2 2498710 218 218 67814 0 2 phylum 2 0 class 218 693071 order 2 0 693072 218 family 0 2 1 Caldisericaceae 2 693073 218 genus 0 1 693074 216 species 1 0 Caldisericum exile 693075 216 phylum 0 8 74152 484 265 447830 5 1 Endomicrobia 1 0 class 1783344 264 order 4 1 Endomicrobiales 3 0 1783343 261 family 3 1 Endomicrobiaceae 0 4 2 0 genus 257 1408194 species 1 0 Candidatus Endomicrobium trichonymphae 1408204 108 species Endomicrobium proavitum 0 1 1408281 149 105 99260 1 0 no rank 105 167965 0 uncultured Termite group 1 bacterium 1 species class 0 2 641853 114 641854 114 order 0 1 1 Elusimicrobiales 2 641876 113 family 1 0 423604 113 genus 0 1 species 0 Elusimicrobium minutum 1 423605 113 23 0 phylum 13499 32066 203490 13499 class 23 0 14 Fusobacteriia 1 order 22 0 21 Fusobacteriales 1 203491 13485 11106 203492 0 14 Fusobacteriaceae 1 12 family 10712 848 9 24 0 Fusobacterium 1 genus 861 451 species Fusobacterium ulcerans 0 1 1581 860 0 Fusobacterium periodonticum 1 species 849 258 species 1 0 Fusobacterium gonidiaformans 859 171 species Fusobacterium necrophorum 0 1 species 1 Fusobacterium mortiferum 0 850 434 1062 856 1 Fusobacterium varium 0 species 5868 851 1 0 Fusobacterium nucleatum species Fusobacterium hwasookii 0 1 species 863 1583098 2 5 0 Ilyobacter 1 genus 380 167639 species Ilyobacter polytropus 0 1 167642 375 1129771 2358 family 9 6 0 1 Leptotrichiaceae 300 32068 0 1 genus 826 300 species 0 Sebaldella termitidis 1 34104 503 genus 1 0 species 0 Streptobacillus moniliformis 1 34105 503 5 Leptotrichia 1 1 0 genus 1266 32067 species 1 Leptotrichia buccalis 0 40542 336 929 2633022 0 3 no rank species 1 Leptotrichia sp. oral taxon 498 0 712368 331 species 1 0 Leptotrichia sp. oral taxon 212 712357 275 1 0 Leptotrichia sp. oral taxon 847 species 323 1785996 283 168808 1 0 genus 283 187101 1 0 Sneathia amnii species 225 2138240 1 0 phylum 2138243 225 class 0 1 2138246 225 order 0 1 225 2138247 1 0 family 225 68335 1 0 genus 225 35786 0 Coprothermobacter proteolyticus 1 species 1783272 665358 clade 0 1612 102 1 Tenericutes 6 0 phylum 21018 544448 0 2 no rank 537 713063 251 1911683 Tenericutes bacterium MZ-XQ 0 1 species species 1 Tenericutes bacterium MO-XQ 0 1911684 286 no rank 0 2 2799557 312 312 1912503 Candidatus Izimaplasma 1 3 0 2 genus 2624196 309 no rank 1 0 1 0 Candidatus Izimaplasma sp. HR1 species 309 1541959 Mollicutes 1 75 0 97 class 20163 31969 1530 186329 0 2 Acholeplasmatales 1 13 order family Acholeplasmataceae 1 0 4 12 2146 1528 genus Candidatus Phytoplasma 1 0 12 6 33926 703 170 85630 1 0 species group species 1 Candidatus Phytoplasma mali 0 37692 170 148 85632 1 0 species group species 0 Candidatus Phytoplasma australiense 1 59748 148 species group 0 3 85620 373 140 100379 0 Onion yellows phytoplasma 1 species species Maize bushy stunt phytoplasma 0 1 202462 111 species 1 0 Aster yellows witches'-broom phytoplasma 229545 122 821 2147 5 1 Acholeplasma 7 0 genus species 0 Acholeplasma laidlawii 1 2148 196 35623 189 species Acholeplasma oculi 0 1 0 Acholeplasma brassicae 1 species 171 61635 38986 258 species 1 0 Acholeplasma palmae 2085 11128 order 85 0 Mycoplasmatales 1 44 2092 11043 family 1 Mycoplasmataceae 26 0 43 genus 3 0 2 Ureaplasma 1 2129 464 224 2130 Ureaplasma urealyticum 0 1 species 238 134821 1 Ureaplasma parvum 0 species 2546 2767358 0 12 genus species 1 Mycoplasma fermentans 0 2115 196 29553 163 species 1 0 Mycoplasma bovirhinis species 1 Mycoplasma canis 0 29555 255 species 0 Mycoplasma pulmonis 1 2107 277 Mycoplasma bovigenitalium 0 1 species 181 2112 Mycoplasma cynos 0 1 species 229 171284 2113 132 species 1 0 Mycoplasma californicum species Mycoplasma synoviae 0 1 2109 136 212 48003 Mycoplasma pullorum 0 1 species species 1 Mycoplasma arginini 0 2094 188 species 1 0 Mycoplasma bovis 28903 386 2110 191 species Mycoplasma agalactiae 0 1 genus 0 75 Mycoplasma 1 27 2093 8007 species 1 Mycoplasma penetrans 0 28227 311 560 136241 1 0 Mycoplasma haemocanis species 0 Mycoplasma ovis 1 species 108 171632 127 2104 1 Mycoplasma pneumoniae 0 species 1 0 Mycoplasma wenyonii species 60 65123 0 Mycoplasma genitalium 1 species 101 2097 1 0 Mycoplasma hyopneumoniae species 1030 2099 1 0 Mycoplasma arthritidis species 75 2111 1 0 Mycoplasma mobile species 223 2118 0 Mycoplasma flocculare 1 species 130 2128 species 1 0 Mycoplasma suis 57372 189 2123 187 species Mycoplasma putrefaciens 0 1 0 Mycoplasma canadense 1 species 147 29554 1 Mycoplasma bovoculi 0 species 398 45362 species 1 Mycoplasma dispar 0 86660 127 1 0 Mycoplasma haemofelis species 1180 29501 1 0 Mycoplasma yeatsii species 269 51365 0 Mycoplasma parvum 1 species 511 984991 155 50052 0 Mycoplasma crocodyli 1 species Mycoplasma hyorhinis 0 1 species 191 2100 656088 1074 species group 3 0 2105 269 species 0 Mycoplasma leachii 1 499 2102 Mycoplasma mycoides 0 1 species 306 2095 0 Mycoplasma capricolum 1 species species 0 Mycoplasma gallisepticum 1 2096 327 no rank 1 0 2683645 112 1 Mycoplasma sp. (ex Biomphalaria glabrata) 0 species 112 1749074 species 1 0 Mycoplasma hominis 2098 340 order 6 0 1 Entomoplasmatales 39 186328 7430 family 24 1 Spiroplasmataceae 0 6 2131 5035 2132 5029 genus 41 0 1 Spiroplasma 23 1 Spiroplasma helicoides 0 species 236 216938 47834 287 species Spiroplasma kunkelii 0 1 0 Spiroplasma taiwanense 1 species 346 2145 214 216935 Spiroplasma culicicola 0 1 species 2139 201 species Spiroplasma clarkii 0 1 species 1 Spiroplasma mirum 0 2144 110 244 2133 0 Spiroplasma citri 1 species species 0 Spiroplasma cantharicola 1 362837 261 species Spiroplasma atrichopogonis 0 1 1114980 111 Spiroplasma apis 0 1 species 167 2137 1 Spiroplasma sabaudiense 0 species 124 216944 189 216934 1 0 Spiroplasma corruscae species species 1 Spiroplasma syrphidicola 0 216945 200 209 315358 1 Spiroplasma eriocheiris 0 species 0 Spiroplasma floricola 1 species 278 216937 150 2136 0 Spiroplasma monobiae 1 species 0 Spiroplasma chrysopicola 1 species 170 216933 216946 235 species 1 0 Spiroplasma turonicum 410 216942 1 0 Spiroplasma litorale species 216936 246 species 1 Spiroplasma diminutum 0 no rank 0 2 2637901 600 300 1914410 Spiroplasma sp. NBRC 100390 0 1 species Spiroplasma sp. TU-14 0 1 species 300 1898044 33925 2389 family 4 0 Entomoplasmataceae 1 14 800 46238 5 6 0 Entomoplasma 1 genus species 1 0 Entomoplasma somnilux 215578 235 species Entomoplasma freundtii 0 1 74700 65 species 1 0 Entomoplasma melaleucae 81459 252 214888 242 species 1 Entomoplasma luminosum 0 Mesoplasma 1 41 0 8 genus 1585 46239 Mesoplasma lactucae 0 1 species 126 138853 182 219745 Mesoplasma tabanidae 0 1 species 0 Mesoplasma entomophilum 1 species 169 2149 Mesoplasma coleopterae 0 1 species 175 324078 225999 169 species Mesoplasma syrphidae 0 1 512 2151 0 Mesoplasma florum 1 species 1 0 Mesoplasma chauliocola species 211 216427 210423 1239 36 0 Firmicutes 1 658 phylum 526524 824 class 0 8 order 8 Erysipelotrichales 1 0 4 526525 824 7 0 1 1 Erysipelotrichaceae family 820 128827 191303 267 genus 0 1 no rank 0 1 2638206 267 species 0 Turicibacter sp. H121 1 1712675 267 1729679 115 genus 1 0 115 1702221 1 Faecalibaculum rodentium 0 species 1 0 no rank 132 544447 132 1834207 1 Erysipelotrichaceae bacterium I46 0 species Erysipelothrix 1 0 5 3 genus 305 1647 1514105 147 species 0 Erysipelothrix larvae 1 153 1648 Erysipelothrix rhusiopathiae 0 1 species class 0 18 Negativicutes 1 28 909932 3246 10 0 14 1 Veillonellales order 934 1843489 31977 920 family 9 4 0 Veillonellaceae 1 81 909928 0 1 genus species Negativicoccus massiliensis 0 1 1702287 81 906 297 genus 2 2 0 1 Megasphaera 0 Megasphaera elsdenii 1 species 295 907 153 39948 0 2 Dialister 1 2 genus species Dialister pneumosintes 0 1 39950 151 1 Veillonella 0 1 3 genus 385 29465 29466 286 species 1 Veillonella parvula 0 species 1 Veillonella rodentium 0 248315 98 order 14 0 11 Selenomonadales 1 909929 2114 1843491 1042 family 9 0 2 Selenomonadaceae 1 158846 279 genus 2 1 Megamonas 2 0 277 158847 1 0 Megamonas hypermegale species 761 970 6 1 Selenomonas 0 34 genus 2637378 339 no rank 3 0 712538 117 species 1 Selenomonas sp. oral taxon 478 0 127 713030 0 Selenomonas sp. oral taxon 136 1 species 95 1884263 0 Selenomonas sp. oral taxon 920 1 species 1 Selenomonas ruminantium 0 species 233 971 species 1 Selenomonas sputigena 0 69823 155 1061 1843490 Sporomusaceae 1 4 0 4 family genus 1 Pelosinus 10 0 3 365348 1057 603 2629460 1 0 no rank 603 484770 0 Pelosinus sp. UFO1 1 species 365349 444 species 0 Pelosinus fermentans 1 1843488 180 order 0 1 Acidaminococcales 1 3 family 2 0 909930 179 904 179 genus 0 2 1 Acidaminococcus fermentans 0 species 112 905 67 187327 0 Acidaminococcus intestini 1 species class 12 0 1737404 1895 155 1737407 1 0 no rank 1582879 155 genus 1 0 155 1852374 1 Ezakiella massiliensis 0 species order 11 0 1 Tissierellales 11 1737405 1740 family 0 10 1 Peptoniphilaceae 8 1570339 1316 292 1161127 0 1 genus species 1 0 Murdochiella vaginalis 1852373 292 1 0 genus 282 543311 species Parvimonas micra 0 1 33033 282 150022 247 genus 0 1 species 1 Finegoldia magna 0 1260 247 162289 134 genus 2 0 Peptoniphilus 1 2 1 0 no rank 132 2637196 Peptoniphilus sp. ING2-D1G 0 1 species 132 1912856 0 2 genus 351 165779 1870984 193 species 1 Anaerococcus mediterraneensis 0 33034 158 species 0 Anaerococcus prevotii 1 2 0 family 413 2042895 413 1505664 2 0 2 Gottschalkia 1 genus 411 1556 Gottschalkia acidurici 0 1 species 131160 91061 416 0 158 1 Bacilli class Bacillales 1 299 0 252 order 95542 1385 24571 186822 58 0 1 Paenibacillaceae 44 family 55080 1536 genus 3 0 1 Brevibacillus 4 1 0 Brevibacillus laterosporus species 694 1465 1393 553 species Brevibacillus brevis 0 1 1 0 Brevibacillus formosus species 286 54913 85151 480 no rank 0 2 55079 480 genus 0 2 0 1 no rank 109 2642329 species 1 Aneurinibacillus sp. XH2 0 1450761 109 species 1 Aneurinibacillus soli 0 1500254 371 221 76632 0 1 genus 221 377615 Thermobacillus composti 0 1 species 36 1 Paenibacillus 0 86 genus 22276 44249 160799 647 species 0 Paenibacillus borealis 1 1 Paenibacillus yonginensis 0 species 200 1462996 983 1616788 Paenibacillus bovis 0 1 species 165 169760 Paenibacillus stellifer 0 1 species 365617 134 species Paenibacillus sabinae 0 1 1464 391 species 1 0 Paenibacillus larvae 189425 2007 species Paenibacillus graminis 0 1 842 44251 0 Paenibacillus durus 1 species 196 159743 1 Paenibacillus terrae 0 species species 1 0 Paenibacillus naphthalenovorans 162209 157 414771 1704 species Paenibacillus donghaensis 0 1 0 Paenibacillus kribbensis 1 species 181 172713 2506 1406 1 0 Paenibacillus polymyxa species 185978 6108 no rank 13 0 Paenibacillus sp. IHBB 10380 0 1 species 466 1566358 1 Paenibacillus sp. Y412MC10 0 species 195 481743 1536774 551 species 0 Paenibacillus sp. FSL H7-0357 1 2069255 268 species 0 Paenibacillus sp. lzh-N1 1 1536769 1077 species 0 Paenibacillus sp. FSL P4-0081 1 species 1 0 Paenibacillus sp. JDR-2 324057 255 1 Paenibacillus sp. FSL R5-0345 0 species 520 1536770 1 0 Paenibacillus sp. FSL R7-0273 species 660 1536772 1 0 Paenibacillus sp. FSL H7-0737 species 519 1536775 187 1695218 1 Paenibacillus sp. 32O-W 0 species 1536773 527 species Paenibacillus sp. FSL R7-0331 0 1 1870819 557 species 1 Paenibacillus sp. BIHB4019 0 species 0 Paenibacillus sp. FSL R5-0912 1 1536771 326 265 1178515 1 0 Paenibacillus swuensis species 248 528191 0 Paenibacillus xylanexedens 1 species Paenibacillus beijingensis 0 1 species 251 1126833 1763538 252 species 1 0 Paenibacillus crassostreae species Paenibacillus ihbetae 0 1 1870820 405 species group 1 0 2044880 343 343 483937 Paenibacillus riograndensis 0 1 species 61624 3465 species 1 0 Paenibacillus mucilaginosus 386 189426 0 Paenibacillus odorifer 1 species species 1 Paenibacillus peoriae 0 59893 354 family Bacillaceae 1 59 0 116 186817 46167 291 29331 2 3 0 1 Amphibacillus genus 1449 288 species 1 Amphibacillus xylanus 0 473 1329200 2 0 genus 252 1221500 Fictibacillus phosphorivorans 0 1 species species 1 Fictibacillus arsenicus 0 255247 221 175304 189 genus 0 1 species 1 0 Lentibacillus amyloliquefaciens 1472767 189 861 2675229 0 2 genus 233 264697 Bacillus muralis 0 1 species 628 1478 1 0 Bacillus simplex species 201 1055323 1 Aeribacillus 0 1 2 genus 33936 200 species 1 0 Aeribacillus pallidus 400634 1859 genus 0 13 1 Lysinibacillus 5 28031 302 species 1 Lysinibacillus fusiformis 0 339 2636778 0 1 no rank 2072025 339 species Lysinibacillus sp. YS11 0 1 species 1 0 Lysinibacillus varians 1145276 276 Lysinibacillus sphaericus 0 1 species 929 1421 2 0 genus 621 2675230 859143 365 species 0 Bacillus kochii 1 species Bacillus oceanisediminis 0 1 665099 256 158 459532 1 0 genus 0 Terribacillus aidingensis 1 species 158 586416 0 1 genus 215 1906945 215 1426 1 0 Parageobacillus thermoglucosidasius species 84406 2123 genus Virgibacillus 1 9 0 7 species 1 Virgibacillus phasianinus 0 2017483 323 0 Virgibacillus pantothenticus 1 species 437 1473 163877 373 species Virgibacillus necropolis 0 1 657 2620237 0 2 no rank 303 1911587 Virgibacillus sp. 6R 0 1 species Virgibacillus sp. SK37 0 1 species 354 403957 species 1 Virgibacillus halodenitrificans 0 1482 324 0 5 genus 1543 2675234 309 79880 Bacillus clausii 0 1 species 145 86665 Bacillus halodurans 0 1 species species 0 Bacillus pseudofirmus 1 79885 402 310 300825 0 Bacillus lehensis 1 species Bacillus krulwichiae 0 1 species 377 199441 genus 15 1 Geobacillus 0 84 129337 2613 species 0 Geobacillus subterraneus 1 129338 114 1505648 736 species group 0 4 188 1462 1 Geobacillus kaustophilus 0 species Geobacillus lituanicus 0 1 species 77 169283 33941 369 species 0 Geobacillus thermoleovorans 1 species 1 Geobacillus thermocatenulatus 0 33938 102 1422 265 species 1 0 Geobacillus stearothermophilus no rank 0 6 2642459 1097 93 1233873 Geobacillus sp. GHH01 0 1 species 544556 87 species Geobacillus sp. Y412MC61 0 1 281 691437 1 Geobacillus sp. C56-T3 0 species 1 0 Geobacillus sp. Y412MC52 species 73 550542 species 0 Geobacillus sp. WCH70 1 471223 311 581103 252 species 1 Geobacillus sp. Y4.1MC1 0 33940 224 species 1 Geobacillus thermodenitrificans 0 1921421 93 species Geobacillus genomosp. 3 0 1 1 Salimicrobium 1 0 2 genus 75 351195 1 0 Salimicrobium jeotgali species 74 1230341 1386 32198 genus Bacillus 1 377 0 58 0 Bacillus xiamenensis 1 species 191 1178537 1408 1028 species Bacillus pumilus 0 1 0 10 species group 17430 86661 1395 1392 1 0 Bacillus anthracis species 1 Bacillus cytotoxicus 0 species 282 580165 1405 1831 species Bacillus mycoides 0 1 species Bacillus thuringiensis 0 1 1428 6459 Bacillus toyonensis 0 1 species 297 155322 no rank 3 0 2750818 942 2053832 251 species 0 Bacillus sp. HBCD-sjtu 1 1839798 443 species 0 Bacillus sp. FDAARGOS_235 1 Bacillus sp. ABP14 0 1 species 248 1892404 658666 374 species 1 Bacillus bombysepticus 0 species 0 Bacillus cereus 1 1396 5850 1 0 Bacillus beveridgei species 141 632773 1404 2212 species Bacillus megaterium 0 1 species 1 0 Bacillus safensis 561879 467 380 412384 1 0 Bacillus aryabhattai species species 1 Bacillus glycinifermentans 0 1664069 433 species 1 Bacillus methanolicus 0 1471 232 418 1413 1 0 Bacillus cellulosilyticus species species 1 0 Bacillus flexus 86664 663 35 79881 1 Bacillus gibsonii 0 species 1479 180 species 1 0 Bacillus smithii species 1 0 Bacillus endophyticus 135735 381 288 1398 Bacillus coagulans 0 1 species 824 33932 Bacillus cohnii 0 1 species 653685 3309 species group 0 9 1648923 188 species Bacillus paralicheniformis 0 1 253 1402 1 Bacillus licheniformis 0 species species 1 Bacillus atrophaeus 0 1452 277 1 0 Bacillus vallismortis species 21 72361 0 3 species subgroup 1110 1938374 Bacillus siamensis 0 1 species 61 659243 1390 539 species Bacillus amyloliquefaciens 0 1 492670 510 species 0 Bacillus velezensis 1 species 0 Bacillus subtilis 1 1423 1288 119858 172 species 1 0 Bacillus sonorensis species 1 0 Bacillus infantis 324767 161 1547283 349 species Bacillus weihaiensis 0 1 79883 236 species 1 Bacillus horikoshii 0 1792192 243 species group 0 1 Bacillus altitudinis 0 1 species 243 293387 19 0 no rank 2220 185979 species 1 Bacillus sp. 1NLA3E 0 666686 301 234 756828 1 0 Bacillus sp. WP8 species Bacillus sp. H15-1 0 1 species 112 1856406 1127744 64 species 1 Bacillus sp. JS 0 1941347 58 species 1 Bacillus sp. 275 0 95 1574141 Bacillus sp. YP1 0 1 species 0 Bacillus sp. 1s-1 1 species 114 2026248 1628753 39 species Bacillus sp. LM 4-2 0 1 species 1 0 Bacillus sp. Lzh-5 2049935 40 Bacillus sp. MD-5 0 1 species 73 2009331 1837130 114 species 0 Bacillus sp. FJAT-14266 1 78 1446792 1 Bacillus sp. Pc3 0 species 1 Bacillus sp. IHB B 7164 0 species 345 1827146 species 1 0 Bacillus sp. (in: Bacteria) 1409 38 0 Bacillus sp. OxB-1 1 species 96 98228 1570330 25 species 1 0 Bacillus sp. BH072 563169 62 species 1 0 Bacillus sp. SJ-10 268 1565991 1 0 Bacillus sp. X1(2014) species species 1 Bacillus sp. SDLI1 0 1774743 64 2 0 genus 364 45667 155 402384 0 Halobacillus mangrovi 1 species species 1 0 Halobacillus halophilus 1570 209 1651 150247 6 1 Anoxybacillus 0 7 genus 2639704 625 no rank 0 2 309 1490057 Anoxybacillus sp. B7M1 0 1 species 316 1490052 1 Anoxybacillus sp. B2M1 0 species Anoxybacillus amylolyticus 0 1 species 333 294699 Anoxybacillus flavithermus 0 1 species 449 33934 198467 237 species 1 0 Anoxybacillus gonensis 182709 673 genus 1 Oceanobacillus 0 2 2 671 182710 1 Oceanobacillus iheyensis 0 species family 25 0 5 Planococcaceae 1 186818 5623 genus 9 0 1 Sporosarcina 5 1569 1700 1476 674 species 1 Sporosarcina psychrophila 0 2647733 271 no rank 0 2 1930546 161 species Sporosarcina sp. P37 0 1 1930764 110 species Sporosarcina sp. P33 0 1 1 Sporosarcina ureae 0 species 746 1571 1372 2512 genus Planococcus 1 17 0 12 species 1 0 Planococcus halocryophilus 1215089 280 species Planococcus sp. L10.15 0 1 1302659 309 0 Planococcus plakortidis 1 species 87 1038856 432 2662419 2 0 no rank 205 2058136 1 Planococcus sp. MB-3u-03 0 species Planococcus sp. PAMC 21323 0 1 species 227 1526927 0 Planococcus rifietoensis 1 species 147 200991 0 Planococcus kocurii 1 species 189 1374 species Planococcus maritimus 0 1 192421 300 species 1 Planococcus faecalis 0 1598147 369 species 1 0 Planococcus antarcticus 161360 181 species 1 0 Planococcus donghaensis 414778 201 1 0 genus 236 1649 no rank 1 0 2644826 236 1750719 236 species 1 0 Kurthia sp. 11kri321 1 0 genus 265 648802 species 1 0 Rummeliibacillus stabekisii 241244 265 157226 261 genus 2 Jeotgalibacillus 1 3 0 1508404 258 species 1 0 Jeotgalibacillus malaysiensis genus 1 Solibacillus 3 0 3 648800 644 335 76853 1 Solibacillus silvestris 0 species no rank 0 1 2637870 306 2048654 306 species Solibacillus sp. R5-41 0 1 40 26 0 Staphylococcaceae 1 family 14135 90964 13086 1279 33 0 75 1 Staphylococcus genus species 1 0 Staphylococcus lugdunensis 28035 335 91994 256 no rank 0 1 1 Staphylococcus sp. AntiMn-1 0 species 256 1715860 622 29388 1 0 Staphylococcus capitis species 315 1295 0 Staphylococcus schleiferi 1 species 70255 289 species Staphylococcus condimenti 0 1 species 1 0 Staphylococcus haemolyticus 1283 338 Staphylococcus saprophyticus 0 1 species 319 29385 70258 168 species 1 0 Staphylococcus piscifermentans 361 985002 1 Staphylococcus argenteus 0 species 188 985762 0 Staphylococcus agnetis 1 species species 1 Staphylococcus lutrae 0 155085 348 Staphylococcus warneri 0 1 species 295 1292 species Staphylococcus aureus 0 1 1280 1755 species 1 0 Staphylococcus xylosus 1288 532 246432 453 species Staphylococcus equorum 0 1 675 1282 0 Staphylococcus epidermidis 1 species 272 1281 1 0 Staphylococcus carnosus species 1 Staphylococcus pettenkoferi 0 species 155 170573 species 1 0 Staphylococcus sciuri 1296 450 species 1 Staphylococcus hominis 0 1290 294 61015 358 species 1 0 Staphylococcus succinus species 1 0 Staphylococcus simiae 308354 402 0 Staphylococcus simulans 1 species 288 1286 174 1294 1 0 Staphylococcus muscae species 361 214473 1 Staphylococcus nepalensis 0 species 1 0 Staphylococcus pseudintermedius species 373 283734 29384 336 species 1 0 Staphylococcus kloosii species 0 Staphylococcus pasteuri 1 45972 1182 1 0 Staphylococcus cohnii species 329 29382 species 1 0 Staphylococcus hyicus 1284 247 46127 198 species 1 0 Staphylococcus felis 643214 343 species Staphylococcus stepanovicii 0 1 45669 119 genus 1 0 407035 119 species 0 Salinicoccus halodurans 1 genus 0 1 2005363 193 1849491 193 species 1 0 Auricoccus indicus 69965 711 genus Macrococcus 1 18 0 4 69966 251 species 0 Macrococcus caseolyticus 1 205 2619255 1 0 no rank species Macrococcus sp. IME1552 0 1 1898474 205 1855823 237 species Macrococcus canis 0 1 family 0 1 186821 140 663587 140 no rank 1 0 species [Bacillus] selenitireducens 0 1 85683 140 family 8 1 Listeriaceae 0 4 186820 2221 6 0 20 1 Listeria genus 1940 1637 1 Listeria ivanovii 0 species 450 1638 209 1642 1 0 Listeria innocua species 215 1640 1 0 Listeria seeligeri species 1643 235 species Listeria welshimeri 0 1 species 1 Listeria monocytogenes 0 1639 811 2755 277 genus 1 0 277 2756 1 Brochothrix thermosphacta 0 species no rank 0 8 539002 1005 1 0 no rank 235 539738 1378 235 genus 1 0 235 2624949 1 0 no rank species Gemella sp. oral taxon 928 0 1 1785995 235 770 539742 7 0 no rank 7 Exiguobacterium 1 0 17 genus 770 33986 1 Exiguobacterium sibiricum 0 species 110 332410 2644629 575 no rank 0 4 species 1 0 Exiguobacterium sp. U13-1 1849031 197 1 0 Exiguobacterium sp. ZWU0009 species 201 1224749 1399115 104 species 1 0 Exiguobacterium sp. MH3 species Exiguobacterium sp. AT1b 0 1 360911 73 132920 68 species Exiguobacterium antarcticum 0 1 8 0 3 1 Alicyclobacillaceae family 1278 186823 genus 1 0 29330 257 405212 257 species 1 Alicyclobacillus acidocaldarius 0 432330 665 genus 3 3 0 Tumebacillus 1 species 1 0 Tumebacillus avium 1903704 501 species 1 0 Tumebacillus algifaecis 1214604 161 genus 3 1 Kyrpidia 0 3 1129704 353 171 33943 0 Kyrpidia tusciae 1 species 2055160 179 species 1 Kyrpidia sp. EA-1 0 1 0 family 103 186824 103 1677050 0 1 genus 103 1471761 Novibacillus thermophilus 0 1 species 35460 186826 95 0 Lactobacillales 1 163 order 0 1 no rank 139 263855 139 1993866 1 0 Lactobacillales bacterium species 186827 792 family 0 7 792 1375 Aerococcus 1 0 5 7 genus species 1 Aerococcus urinaeequi 0 51665 135 1 Aerococcus urinae 0 species 185 1376 188 87541 1 Aerococcus christensenii 0 species 1 0 Aerococcus viridans species 114 1377 128944 99 species 1 Aerococcus urinaehominis 0 species 0 Aerococcus sanguinicola 1 119206 66 186828 2069 family Carnobacteriaceae 1 0 4 11 2747 1338 genus 5 Carnobacterium 1 8 0 605 2751 1 Carnobacterium maltaromaticum 0 species 257487 490 no rank 2 0 0 Carnobacterium sp. 17-4 1 species 315 208596 175 1564681 1 Carnobacterium sp. CP1 0 species 147709 235 species 1 0 Carnobacterium inhibens 2 1 Marinilactibacillus 0 3 genus 363 191769 no rank 0 1 2632303 360 species Marinilactibacillus sp. 15R 0 1 1911586 360 genus 3 1 Jeotgalibaca 9 0 1470540 364 0 1 no rank 179 2621505 1903686 179 species 1 0 Jeotgalibaca sp. PTS2502 708126 176 species 0 Jeotgalibaca dankookensis 1 19 0 8 1 Enterococcaceae family 4148 81852 51668 333 genus 0 1 51669 333 species 0 Tetragenococcus halophilus 1 33969 281 genus 2 0 1 1 Melissococcus 33970 280 species Melissococcus plutonius 0 1 3117 1350 0 29 1 Enterococcus 12 genus 499 2608891 0 3 no rank 195 2060306 Enterococcus sp. FDAARGOS_163 0 1 species 2060307 156 species 0 Enterococcus sp. FDAARGOS_375 1 148 2057791 1 Enterococcus sp. CR-Ec1 0 species 0 Enterococcus wangshanyuanii 1 species 287 2005703 351 53346 1 Enterococcus mundtii 0 species Enterococcus hirae 0 1 species 304 1354 1352 524 species 1 0 Enterococcus faecium species 1 Enterococcus faecalis 0 1351 465 173 37734 Enterococcus casseliflavus 0 1 species 417368 212 species 0 Enterococcus thailandicus 1 53345 273 species 0 Enterococcus durans 1 3 0 1 1 Vagococcus genus 409 2737 Vagococcus teuberi 0 1 species 189 519472 219 633807 1 Vagococcus penaei 0 species 12258 1300 0 11 Streptococcaceae 1 49 family genus 43 1 Streptococcus 93 0 1301 9283 175 1346 1 0 Streptococcus iniae species 353 1302 1 Streptococcus gordonii 0 species 505 1307 0 Streptococcus suis 1 species species Streptococcus pasteurianus 0 1 197614 133 97 1888195 1 0 Streptococcus himalayensis species 257758 105 species 1 Streptococcus pseudopneumoniae 0 1 Streptococcus equinus 0 species 106 1335 1 0 Streptococcus mutans species 231 1309 181 1349 Streptococcus uberis 0 1 species Streptococcus mitis 0 1 species 273 28037 600 1304 Streptococcus salivarius 0 1 species 125 400065 Streptococcus merionis 0 1 species 80 1305 0 Streptococcus sanguinis 1 species 0 Streptococcus agalactiae 1 species 456 1311 species 0 Streptococcus parasanguinis 1 1318 258 1814128 122 species 1 0 Streptococcus halotolerans 1825069 104 species 1 Streptococcus marmotae 0 134 1811193 0 Streptococcus pantholopis 1 species species 0 Streptococcus oralis 1 1303 279 2 0 species group 712 119603 0 Streptococcus dysgalactiae 1 species 195 1334 1336 517 species Streptococcus equi 0 1 122 1326 0 Streptococcus acidominimus 1 species 102684 186 species 1 Streptococcus infantarius 0 1313 427 species Streptococcus pneumoniae 0 1 1 0 Streptococcus cristatus species 83 45634 109 150055 1 Streptococcus lutetiensis 0 species 3 0 species group 715 671232 240 1338 0 Streptococcus intermedius 1 species 1328 307 species 0 Streptococcus anginosus 1 species 1 0 Streptococcus constellatus 76860 168 111 82348 Streptococcus pluranimalium 0 1 species 1348 175 species 0 Streptococcus parauberis 1 803 2608887 0 7 no rank 1 0 Streptococcus sp. FDAARGOS_192 species 157 1839799 1319 209 species 1 0 Streptococcus sp. 'group B' 1902136 82 species 1 Streptococcus sp. NPS 308 0 712633 84 species 1 0 Streptococcus sp. oral taxon 431 102 1156433 Streptococcus sp. I-P16 0 1 species 1 0 Streptococcus sp. A12 species 93 1759399 1156431 76 species Streptococcus sp. I-G2 0 1 species 0 Streptococcus gallolyticus 1 315405 286 809 1314 Streptococcus pyogenes 0 1 species 1 0 Streptococcus macedonicus species 114 59310 1308 221 species 1 0 Streptococcus thermophilus 1357 2964 genus Lactococcus 1 12 0 5 species 0 Lactococcus piscium 1 1364 298 1358 2024 species 0 Lactococcus lactis 1 1366 168 species 0 Lactococcus raffinolactis 1 species 1 0 Lactococcus garvieae 1363 462 Leuconostocaceae 1 2 0 17 family 2726 81850 46255 992 genus 1 Weissella 0 12 6 759620 97 species Weissella ceti 0 1 species 1 0 Weissella jogaejeotgali 1631871 439 species 0 Weissella cibaria 1 137591 181 132 165096 0 Weissella koreensis 1 species 1249 131 species Weissella paramesenteroides 0 1 46254 150 genus 0 1 150 1247 1 Oenococcus oeni 0 species 1582 1243 1 Leuconostoc 0 19 9 genus Leuconostoc lactis 0 1 species 108 1246 255248 80 species 1 Leuconostoc garlicum 0 1 0 Leuconostoc kimchii species 169 136609 0 Leuconostoc citreum 1 species 133 33964 species Leuconostoc carnosum 0 1 1252 165 2685106 167 no rank 1 0 1 Leuconostoc sp. C2 0 species 167 979982 species 1 0 Leuconostoc gelidum 1244 285 1245 456 species 0 Leuconostoc mesenteroides 1 13233 33958 58 0 13 Lactobacillaceae 1 family 2767890 207 genus 1 0 1 Lactobacillus hokkaidonensis 0 species 207 1193095 2767892 428 genus 0 1 428 240427 0 Lactobacillus paracollinoides 1 species 0 2 Pediococcus 1 6 genus 994 1253 51663 163 species 1 0 Pediococcus damnosus species group 0 1 1670797 253 species 1 Pediococcus acidilactici 0 1254 253 1 0 Pediococcus inopinatus species 127 114090 1 0 Pediococcus claussenii species 150 187452 species 1 0 Pediococcus pentosaceus 1255 299 849 2742598 0 3 genus species Lactobacillus fermentum 0 1 1613 179 97478 148 species Lactobacillus mucosae 0 1 species 0 Lactobacillus reuteri 1 1598 522 2767842 1347 genus 3 0 Lactobacillus paraplantarum 0 1 species 156 60520 1 Lactobacillus plantarum 0 species 1041 1590 150 1589 0 Lactobacillus pentosus 1 species 457 2767889 2 0 genus species Lactobacillus backii 0 1 375175 227 1 Lactobacillus coryniformis 0 species 230 1610 2759736 927 genus 3 0 species 0 Lactobacillus casei 1 1582 316 species Lactobacillus paracasei 0 1 1597 306 305 47715 1 Lactobacillus rhamnosus 0 species 16 Lactobacillus 1 86 0 genus 3638 1578 species 1 Lactobacillus gallinarum 0 52242 183 441 1587 1 Lactobacillus helveticus 0 species 165 1579 Lactobacillus acidophilus 0 1 species 178 267818 1 Lactobacillus kefiranofaciens 0 species 633 1584 Lactobacillus delbrueckii 0 1 species 145 83683 0 Lactobacillus amylolyticus 1 species 200 1604 1 0 Lactobacillus amylovorus species 372 33959 1 Lactobacillus johnsonii 0 species 0 Lactobacillus jensenii 1 species 177 109790 species 1 0 Lactobacillus acetotolerans 1600 119 2620435 547 no rank 4 0 species Lactobacillus sp. D1501 0 1 2108362 79 species 1 Lactobacillus sp. wkB8 0 1545702 201 1 Lactobacillus sp. CBA3606 0 species 81 2099789 186 2099788 1 Lactobacillus sp. CBA3605 0 species Lactobacillus gasseri 0 1 species 392 1596 2767886 479 genus 0 3 1 0 Lactobacillus koreensis species 102 637971 species 1 Lactobacillus zymae 0 267363 73 1 Lactobacillus brevis 0 species 304 1580 0 1 genus 71 2767876 1603 71 species 1 0 Lactobacillus amylophilus 2767887 1091 genus 0 4 species Lactobacillus agilis 0 1 1601 110 species 0 Lactobacillus ruminis 1 1623 88 719 1624 0 Lactobacillus salivarius 1 species 174 89059 1 0 Lactobacillus acidipiscis species 109 2767877 1 0 genus species 0 Lactobacillus kunkeei 1 148814 109 genus 2 0 2767881 355 1625 169 species Lactobacillus sanfranciscensis 0 1 Lactobacillus lindneri 0 1 species 186 53444 genus 0 3 2767893 375 species Lactobacillus buchneri 0 1 1581 125 117 152331 1 Lactobacillus parabuchneri 0 species 0 Lactobacillus curieae 1 species 133 1138822 genus 0 2 2767885 494 1 0 Lactobacillus curvatus species 190 28038 304 1599 0 Lactobacillus sakei 1 species genus 6 0 2767879 1399 1 Lactobacillus allii 0 species 217 1847728 211 392416 1 0 Lactobacillus crustorum species species 0 Lactobacillus ginsenosidimutans 1 1007676 286 216 1074467 1 Lactobacillus heilongjiangensis 0 species 1612 276 species Lactobacillus farciminis 0 1 species Lactobacillus alimentarius 0 1 1602 193 0 1 no rank 521 84086 521 243899 endosymbiont 'TC1' of Trimyema compressum 0 1 species 211 1676648 3 0 Limnochordia 1 3 class order 2 3 0 Limnochordales 1 1676649 208 0 1 family 205 1676650 1676651 205 genus 1 0 Limnochorda pilosa 0 1 species 205 1555112 no rank 1 0 33974 77 1 0 genus 77 1930845 Ndongobacter massiliensis 0 1 species 77 1871025 188 162 0 Clostridia 1 class 72453 186801 order 3 0 4 1 Natranaerobiales 485256 292 288 485255 2 1 0 1 Natranaerobiaceae family 287 375928 0 1 genus 375929 287 species 1 0 Natranaerobius thermophilus 141 Clostridiales 1 121 0 order 64181 186802 186804 2687 family 10 1 Peptostreptococcaceae 0 2 no rank 0 1 1411023 178 species Peptostreptococcaceae bacterium oral taxon 929 0 1 2081703 178 genus Paeniclostridium 1 0 6 2 1849828 602 1505 596 species 1 Paeniclostridium sordellii 0 184 44259 1 0 genus Filifactor alocis 0 1 species 184 143361 genus Acetoanaerobium 1 1 0 2 186831 290 1511 289 species 1 0 Acetoanaerobium sticklandii genus 3 0 1 Clostridioides 2 1870884 1269 Clostridioides difficile 0 1 species 1266 1496 162 1481960 0 1 genus 1731 162 species 1 Peptoclostridium acidaminophilum 0 family 0 5 1 Eubacteriaceae 4 186806 726 266 33951 1 0 genus 33952 266 species 1 Acetobacterium woodii 0 genus 2 1 Eubacterium 0 1 1730 455 1736 454 species 1 Eubacterium limosum 0 family 22 1 Lachnospiraceae 0 13 186803 6317 2039240 270 genus 0 1 Anaerotignum propionicum 0 1 species 270 28446 2719313 179 genus 0 1 1 0 [Clostridium] bolteae species 179 208479 0 1 genus 269 28050 39485 269 species 1 [Eubacterium] eligens 0 460 572511 3 0 1 Blautia 1 genus 211 1322 1 Blautia hansenii 0 species no rank 0 1 2648079 248 248 1796616 1 Blautia sp. YL58 0 species genus 1 0 2719231 207 207 84030 [Clostridium] saccharolyticum 0 1 species 90 841 2 2 0 Roseburia 1 genus 1 0 Roseburia hominis species 88 301301 698776 1017 genus 1 0 1 Cellulosilyticum 2 Cellulosilyticum lentocellum 0 1 species 1016 29360 1506553 822 genus 3 0 1871021 108 species 1 Lachnoclostridium phocaeense 0 522 66219 Lachnoclostridium phytofermentans 0 1 species 1 0 no rank 192 2608895 1834196 192 species 0 Lachnoclostridium sp. YL32 1 no rank 2 0 186928 354 712991 137 species 1 0 Lachnospiraceae bacterium oral taxon 500 species [Eubacterium] rectale 0 1 39491 217 genus 1 0 1663717 179 179 1679721 Herbinix luporum 0 1 species 1356 2569097 0 1 genus species [Eubacterium] hallii 0 1 39488 1356 genus 1 0 207244 199 199 649756 0 Anaerostipes hadrus 1 species genus 0 2 830 902 533 43305 1 Butyrivibrio proteoclasticus 0 species 185008 369 species 1 Butyrivibrio hungatei 0 31984 199 family 1 0 Heliobacteriaceae 1 2 genus 1 0 2697 198 1 Heliobacterium modesticaldum 0 species 198 35701 family 0 1 216572 205 459786 205 genus 1 0 205 351091 1 Oscillibacter valericigenes 0 species family 39 Clostridiaceae 1 25 0 31979 44226 390805 332 genus Geosporobacter 1 0 1 2 Geosporobacter ferrireducens 0 1 species 331 1424294 114627 1461 genus 0 2 1207 208226 Alkaliphilus metalliredigens 0 1 species species Alkaliphilus oremlandii 0 1 461876 254 0 8 Candidatus Arthromitus 1 4 genus 889 49082 no rank 3 0 2638829 881 49118 291 species 1 0 Candidatus Arthromitus sp. SFB-mouse 1041504 309 species 0 Candidatus Arthromitus sp. SFB-rat-Yit 1 species 1 0 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 281 genus 0 113 Clostridium 1 30 1485 41519 species 1 Clostridium botulinum 0 1491 20983 29341 681 species Clostridium argentinense 0 1 0 Clostridium chauvoei 1 species 509 46867 0 Clostridium formicaceticum 1 species 407 1497 1 Clostridium cellulovorans 0 species 571 1493 1509 604 species 1 Clostridium sporogenes 0 1561 1008 species 0 Clostridium baratii 1 1538 448 species 0 Clostridium ljungdahlii 1 species 1 0 Clostridium butyricum 1492 1102 324 1519 1 0 Clostridium tyrobutyricum species species 0 Clostridium scatologenes 1 1548 806 1152 1502 0 Clostridium perfringens 1 species 1 Clostridium taeniosporum 0 species 671 394958 species Clostridium carboxidivorans 0 1 217159 920 478 1488 0 Clostridium acetobutylicum 1 species 84023 452 species 1 Clostridium autoethanogenum 0 1221 36745 1 Clostridium saccharoperbutylacetonicum 0 species 1216932 630 species 0 Clostridium bornimense 1 1534 697 species 1 Clostridium kluyveri 0 1 Clostridium pasteurianum 0 species 1122 1501 405 84022 1 0 Clostridium aceticum species 439 1542 1 Clostridium novyi 0 species 0 Clostridium tetani 1 species 607 1513 1520 1832 species 1 0 Clostridium beijerinckii species 0 Clostridium cochlearium 1 1494 480 169679 1924 species 1 Clostridium saccharobutylicum 0 0 2 no rank 342 2614128 111 1042156 1 0 Clostridium sp. SY8519 species 755731 231 species Clostridium sp. BNL1100 0 1 591 238834 1 Clostridium estertheticum 0 species 1805 2304686 0 10 family 2304692 656 genus 0 3 species 0 Herbivorax saccincola 1 1677857 200 species 1 0 [Clostridium] clariflavum 288965 291 1515 165 species 1 0 Ruminiclostridium thermocellum 2305130 162 no rank 1 0 1834198 162 species 1 0 Ruminiclostridium sp. KB18 1 0 genus 147 236752 species Fastidiosipila sanguinis 0 1 236753 147 2304693 342 genus 1 0 0 [Clostridium] thermosuccinogenes 1 species 342 84032 genus 0 1 1637257 129 884684 129 species Mageeibacillus indolicus 0 1 241 1508657 1 Ruminiclostridium 0 6 2 genus species 1 [Clostridium] cellulolyticum 0 1521 235 genus 0 1 2304691 128 1510 128 species 1 0 [Clostridium] stercorarium 1 0 family 245 543349 2733 245 genus 0 1 Symbiobacterium thermophilum 0 1 species 245 2734 68298 444 family 0 4 genus 0 1 1 Syntrophomonas 2 862 312 311 863 1 Syntrophomonas wolfei 0 species 129001 132 genus 1 0 1 Syntrophothermus 2 1 0 Syntrophothermus lipocalidus species 131 86170 family 1 0 990719 76 0 1 genus 76 990721 1805714 76 species 1 0 Christensenella massiliensis 1917 541000 1 Ruminococcaceae 0 2 10 family 2 1 Faecalibacterium 0 6 genus 857 216851 851 853 Faecalibacterium prausnitzii 0 1 species 2305133 67 no rank 0 1 1572656 67 species Ruminococcaceae bacterium CPB6 0 1 no rank 0 1 552397 85 species 1 [Clostridium] cellulosi 0 29343 85 946234 256 genus 2 0 2 Flavonifractor 1 species 1 Flavonifractor plautii 0 292800 254 142 253238 1 0 genus 0 Ethanoligenens harbinense 1 species 142 253239 1263 508 genus 0 2 233 1160721 1 0 Ruminococcus bicirculans species 275 1264 1 Ruminococcus albus 0 species 538999 934 no rank 9 0 family 3 2 0 1 Clostridiales Family XVII. Incertae Sedis 539000 269 Thermaerobacter 1 4 0 2 genus 267 73918 species 1 Thermaerobacter marianensis 0 73919 263 190 2717089 0 1 genus 0 Mordavella sp. Marseille-P3756 1 species 190 2086584 1392389 186 genus 2 0 3 Intestinimonas 1 Intestinimonas butyriciproducens 0 1 species 183 1297617 289 543314 0 3 family 86331 157 genus 1 0 1 Mogibacterium 2 species 0 Mogibacterium diversum 1 114527 156 0 [Eubacterium] sulci 1 species 132 143393 family 27 0 7 Peptococcaceae 1 186807 4279 1051 79206 3 0 1 Desulfosporosinus 4 genus species 1 0 Desulfosporosinus acidiphilus 885581 496 79209 273 species 1 Desulfosporosinus meridiei 0 1 0 Desulfosporosinus orientis species 279 1563 1 0 genus 335 51514 1 Dehalobacterium formicoaceticum 0 species 335 51515 genus Candidatus Desulforudis 1 0 2 2 471826 176 471827 174 species 0 Candidatus Desulforudis audaxviator 1 806 1562 10 0 1 Desulfotomaculum 5 genus 59610 403 species Desulfotomaculum reducens 0 1 150 1565 0 Desulfotomaculum nigrificans 1 species 121 1564 Desulfotomaculum ruminis 0 1 species 1 0 Desulfotomaculum ferrireducens species 122 1833852 51196 131 genus 1 Syntrophobotulus 0 1 2 species 1 0 Syntrophobotulus glycolicus 51197 130 56112 315 genus 0 3 55583 89 species Dehalobacter restrictus 0 1 2 0 no rank 226 2635733 110 1147129 1 Dehalobacter sp. DCA 0 species 1 Dehalobacter sp. CF 0 species 116 1131462 2282742 175 genus 1 0 0 Desulfotomaculum acetoxidans 1 species 175 58138 2282740 360 genus 0 1 species 1 0 Desulfotomaculum gibsoniae 102134 360 2 3 0 1 Thermincola genus 181 278993 178 863643 Thermincola potens 0 1 species genus 5 6 0 1 Desulfitobacterium 36853 742 185 142877 Desulfitobacterium metallireducens 0 1 species species 1 Desulfitobacterium dichloroeliminans 0 233055 169 215 49338 Desulfitobacterium hafniense 0 1 species species 1 Desulfitobacterium dehalogenans 0 36854 167 order 30 Thermoanaerobacterales 1 10 0 68295 5695 2603 186814 0 14 Thermoanaerobacteraceae 1 15 family 192 42857 0 2 no rank genus 0 1 44260 97 97 1525 Moorella thermoacetica 0 1 species 0 1 genus 95 42837 42838 95 species 1 0 Ammonifex degensii 251 249529 1 0 genus 251 911092 Caldanaerobacter subterraneus 0 1 species 1754 1874 genus 0 71 1 Thermoanaerobacter 9 583357 198 species Thermoanaerobacter mathranii 0 1 1 0 Thermoanaerobacter pseudethanolicus species 265 496866 235 46354 1 Thermoanaerobacter wiegelii 0 species 265 29323 Thermoanaerobacter brockii 0 1 species 2325 155 species 1 0 Thermoanaerobacter kivui 478 2636821 0 2 no rank 573062 261 species 0 Thermoanaerobacter sp. X513 1 1 0 Thermoanaerobacter sp. X514 species 217 399726 1 0 Thermoanaerobacter italicus species 207 108150 0 1 genus 84 140458 species 0 Thermacetogenium phaeum 1 85874 84 1 0 genus 188 129957 188 129958 1 Carboxydothermus hydrogenoformans 0 species 543372 115 family 0 1 genus 0 1 252965 115 115 252966 1 0 Mahella australiensis species Thermoanaerobacterales Family III. Incertae Sedis 1 7 0 12 family 2729 543371 1 Caldicellulosiruptor 37 0 9 genus 2008 44000 193 52766 0 Caldicellulosiruptor lactoaceticus 1 species 1 0 Caldicellulosiruptor hydrothermalis species 190 413888 292 44001 1 0 Caldicellulosiruptor saccharolyticus species 179 55205 1 0 Caldicellulosiruptor owensensis species species Caldicellulosiruptor obsidiansis 0 1 717609 273 229 31899 1 0 Caldicellulosiruptor bescii species 52765 243 species Caldicellulosiruptor kristjanssonii 0 1 413889 372 species 1 Caldicellulosiruptor kronotskyensis 0 714 28895 0 2 genus 29329 226 species 1 Thermoanaerobacterium xylanolyticum 0 1 Thermoanaerobacterium thermosaccharolyticum 0 species 488 1517 227387 238 family 0 1 1 0 genus 238 227388 184064 238 species Thermodesulfobium narugense 0 1 53433 1848 order Halanaerobiales 1 6 0 10 family 4 0 1 Halobacteroidaceae 3 53434 784 genus 1 0 42417 484 species 1 0 Halobacteroides halobius 42422 484 genus 1 0 28186 296 296 28187 1 0 Acetohalobium arabaticum species 972 1058 family 1 Halanaerobiaceae 2 0 6 2330 858 genus 0 4 1 Halanaerobium 3 453 2331 1 Halanaerobium praevalens 0 species species 1 0 Halanaerobium hydrogeniformans 656519 401 genus 1 0 Halothermothrix 1 2 32636 198 197 31909 0 Halothermothrix orenii 1 species 3 0 order 275 2770089 family 2 0 2770093 73 73 291988 1 Thermosediminibacter 2 0 2 genus species 0 Thermosediminibacter oceani 1 291990 71 2770092 202 family 0 1 202 499228 0 1 genus species 1 0 Tepidanaerobacter acetatoxydans 499229 202 phylum 0 4 67819 355 class 4 2 0 1 Fimbriimonadia 1663419 355 353 1663425 3 Fimbriimonadales 1 0 2 order 351 1663426 0 2 family 351 1005038 2 0 Fimbriimonas 1 2 genus 1005039 349 species 0 Fimbriimonas ginsengisoli 1 77599 1798711 156 0 clade 77599 1117 23 0 Cyanobacteria 1 156 phylum no rank 1 0 1983111 415 718217 415 species 1 cyanobacterium endosymbiont of Epithemia turgida 0 class 1 Gloeobacteria 0 2 6 307596 937 order 0 5 Gloeobacterales 1 5 307595 935 57 0 1 Gloeobacteraceae 4 family 930 1890422 33071 873 genus 0 5 1 Gloeobacter 3 species 1 Gloeobacter violaceus 0 33072 456 412 1416614 1 Gloeobacter kilaueensis 0 species 8 Pleurocapsales 1 3 0 order 2528 52604 2093 1890498 35 0 1 Dermocarpellaceae 4 family 102115 2058 genus 1 Stanieria 0 45 3 1 0 no rank 1262 2642663 1262 1807358 Stanieria sp. NIES-3757 0 1 species 1 Stanieria cyanosphaera 0 species 751 102116 family 3 Hyellaceae 1 0 36 1890500 432 2 20 0 1 Pleurocapsa genus 396 44474 54308 376 species Pleurocapsa minor 0 1 27455 1161 1 Nostocales 0 103 33 order 1 Nostocaceae 0 62 18 family 14849 1162 1686 264688 11 0 1 Trichormus 3 genus 264691 874 species Trichormus variabilis 0 1 1 0 Trichormus azollae species 801 1164 2530 1163 9 0 1 Anabaena 4 genus 2619674 1589 no rank 0 2 707 46234 Anabaena sp. 90 0 1 species 1647413 882 species Anabaena sp. WA102 0 1 1165 932 species 0 Anabaena cylindrica 1 genus 0 98 Nostoc 1 10 1177 10571 species 0 Nostoc punctiforme 1 272131 749 7 0 no rank 8662 2593658 1618022 931 species 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 1772 28072 0 Nostoc sp. PCC 7524 1 species 1869241 1856 species 0 Nostoc sp. CENA543 1 species Nostoc sp. PCC 7120 0 1 103690 826 1 Nostoc sp. PCC 7107 0 species 1502 317936 797 1261031 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 0 species 1 Nostoc sp. NIES-3756 0 species 978 1751286 1306274 1062 species 1 0 Nostoc flagelliforme 2661849 7477 family 0 8 1186 7477 genus 8 0 52 1 Calothrix 1 0 Calothrix parietina species 1287 32054 6 0 no rank 6138 2619626 species 1 0 Calothrix sp. NIES-4101 2005461 916 1 0 Calothrix sp. 336/3 species 1025 1337936 species Calothrix sp. NIES-3974 0 1 2005462 710 1954171 1153 species 0 Calothrix sp. NIES-2098 1 0 Calothrix sp. NIES-4071 1 species 1325 2005469 species 1 0 Calothrix sp. PCC 7507 99598 1009 1090 1219117 0 1 no rank Nostocales cyanobacterium HT-58-2 0 1 species 1090 1940762 family 2 0 1892263 1395 1395 1190 0 26 1 Fischerella 2 genus no rank 0 1 494603 1369 Fischerella sp. NIES-3754 0 1 species 1369 1752063 family 3 Rivulariaceae 1 68 0 1185 2541 373984 2473 genus 2 1 Rivularia 0 1 no rank 1 0 2676603 2472 2472 373994 0 Rivularia sp. PCC 7116 1 species order 57 1 Synechococcales 0 353 1890424 19335 1 Acaryochloridaceae 0 10 3 family 850 1890429 840 155977 2 6 0 1 Acaryochloris genus 155978 834 species 1 0 Acaryochloris marina 6 Leptolyngbyaceae 1 0 27 family 1704 1890438 genus 5 1 Leptolyngbya 0 89 47251 1677 species 1 Leptolyngbya boryana 0 1184 302 2650499 1286 no rank 0 3 1752064 282 species 0 Leptolyngbya sp. NIES-3755 1 111781 483 species 0 Leptolyngbya sp. PCC 7376 1 species 1 0 Leptolyngbya sp. O-77 1080068 521 32 0 54 Synechococcaceae 1 family 7907 1890426 291 146785 0 1 genus 291 146786 0 Thermosynechococcus elongatus 1 species 189 0 Synechococcus 1 26 genus 5736 1129 no rank 0 23 2626047 5140 species 1 Synechococcus sp. PCC 7003 0 374981 190 532 321332 1 Synechococcus sp. JA-2-3B'a(2-13) 0 species 522 1173263 1 0 Synechococcus sp. PCC 7502 species 1827144 175 species Synechococcus sp. NIES-970 0 1 374982 148 species 1 0 Synechococcus sp. PCC 73109 64471 169 species 1 Synechococcus sp. CC9311 0 316278 321 species 1 Synechococcus sp. RCC307 0 species 1 0 Synechococcus sp. PCC 7117 195498 131 156 195248 1 0 Synechococcus sp. PCC 8807 species 125 29410 0 Synechococcus sp. WH 8103 1 species species Synechococcus sp. SynAce01 0 1 1916956 445 151 585425 1 Synechococcus sp. KORDI-52 0 species 110 32051 Synechococcus sp. WH 7803 0 1 species species Synechococcus sp. KORDI-49 0 1 585423 207 species Synechococcus sp. WH 8109 0 1 166314 297 Synechococcus sp. CC9605 0 1 species 185 110662 84588 121 species 0 Synechococcus sp. WH 8102 1 197 1350461 0 Synechococcus sp. UTEX 2973 1 species species 1 0 Synechococcus sp. CC9902 316279 117 321327 296 species 0 Synechococcus sp. JA-3-3Ab 1 1 0 Synechococcus sp. PCC 6312 species 258 195253 1 0 Synechococcus sp. KORDI-100 species 138 1280380 32049 149 species 0 Synechococcus sp. PCC 7002 1 Synechococcus elongatus 0 1 species 185 32046 species 0 Synechococcus lividus 1 33070 222 genus 1 0 13034 668 species 0 Dactylococcopsis salina 1 292566 668 1158 167375 0 8 Cyanobium 1 3 genus 491 59930 0 Cyanobium gracile 1 species 1 0 no rank 659 2627006 659 1851505 1 0 Cyanobium sp. NIES-981 species 0 1 Merismopediaceae 1 5 family 1288 1890428 1142 1287 genus 4 1 Synechocystis 0 110 1177 2640012 3 0 no rank Synechocystis sp. PCC 6803 0 1 species 260 1148 1 Synechocystis sp. PCC 6714 0 species 657 1147 2116702 260 species 0 Synechocystis sp. IPPAS B-1465 1 2303730 939 family 0 2 939 170610 Halomicronema 1 3 0 2 genus 1 Halomicronema hongdechloris 0 species 936 1209493 family 1 Pseudanabaenaceae 0 6 3 1890436 1607 genus 2 1 Pseudanabaena 0 2 1152 1601 no rank 0 1 2593292 1599 82654 1599 species Pseudanabaena sp. PCC 7367 0 1 family 3 0 1 Prochloraceae 5 1213 4687 4684 1218 1 Prochlorococcus 0 13 4 genus no rank 0 2 2627481 1245 species Prochlorococcus sp. MIT 0604 0 1 1501268 565 1 0 Prochlorococcus sp. MIT 0801 species 680 1501269 3426 1219 Prochlorococcus marinus 0 1 species subclass 46 0 1301283 24880 order 1 Oscillatoriales 181 0 20 1150 8958 1892255 1023 family 2 0 241421 1023 genus 1 Crinalium 1 0 2 1 Crinalium epipsammum 0 species 1022 241425 2176 1892252 5 Microcoleaceae 1 0 65 family 1242 1205 Trichodesmium 1 10 0 2 genus species 0 Trichodesmium erythraeum 1 1206 1232 869 44471 0 2 Microcoleus 1 2 genus 867 2642155 0 1 no rank 1173027 867 species 1 Microcoleus sp. PCC 7113 0 6 0 62 Oscillatoriaceae 1 family 4688 1892254 1158 2231 genus 0 14 Oscillatoria 1 3 species Oscillatoria acuminata 0 1 118323 755 1462 482564 0 Oscillatoria nigro-viridis 1 species 2395 1155738 0 11 1 Moorea 2 genus 2384 1155739 1 0 Moorea producens species 516 1892249 3 1 Cyanothecaceae 0 163 family 353 43988 2 47 0 Cyanothece 1 genus 0 1 no rank 306 2649277 306 395961 1 0 Cyanothece sp. PCC 7425 species 1892251 374 family 0 42 1 Coleofasciculaceae 3 genus Geitlerinema 1 5 0 2 63132 332 no rank 0 1 2648775 327 1173025 327 species 1 0 Geitlerinema sp. PCC 7407 0 73 1 Chroococcales 26 order 15922 1118 family 0 35 1 Microcystaceae 4 1890449 4498 genus 3 1 Microcystis 37 0 1125 4463 2643300 1114 no rank 1 0 1967666 1114 species 0 Microcystis sp. MC19 1 1126 3312 species 1 Microcystis aeruginosa 0 5289 1890464 1 Chroococcaceae 61 0 8 family 102231 1503 genus Gloeocapsa 1 0 4 2 2623012 1499 no rank 1 0 species 1 Gloeocapsa sp. PCC 7428 0 1173026 1499 1785 268175 2 Chondrocystis 1 0 1 genus 1784 2648896 0 1 no rank 0 Chondrocystis sp. NIES-4102 1 species 1784 2005460 669357 1940 genus 3 15 0 1 Geminocystis no rank 2 0 2625037 1925 species 0 Geminocystis sp. NIES-3708 1 1615909 1187 Geminocystis sp. NIES-3709 0 1 species 738 1617448 family 3 7 0 Cyanobacteriaceae 1 1890452 1140 1133 102234 2 Cyanobacterium 1 0 1 genus species 1 0 Cyanobacterium aponinum 379064 1132 13 0 Aphanothecaceae 1 10 family 4922 1890450 1538 28070 0 2 genus species 0 1 2546359 788 strain 1 0 Cyanothece sp. PCC 7822 497965 788 species 0 1 2546356 750 1 Cyanothece sp. PCC 7424 0 strain 750 65393 genus 1 0 263510 983 2546360 983 species 0 1 0 Cyanothece sp. ATCC 51142 1 strain 983 43989 1293 2546365 0 2 genus 2546366 1293 species 2 0 41431 626 strain Cyanothece sp. PCC 8801 0 1 strain 1 Cyanothece sp. PCC 8802 0 395962 667 genus 2 Candidatus Atelocyanobacterium 1 1 0 1453359 483 Candidatus Atelocyanobacterium thalassa 0 1 species 482 713887 2 0 no rank 612 92682 0 1 Halothece 1 2 genus 612 76023 no rank 1 0 2632878 611 Halothece sp. PCC 7418 0 1 species 611 65093 order 1 Chroococcidiopsidales 3 0 4 1890505 2026 Chroococcidiopsidaceae 1 69 0 3 family 2023 1890528 1 Chroococcidiopsis 0 6 2 genus 1954 54298 1 Chroococcidiopsis thermalis 0 species 1948 54299 phylum 0 35 1297 7945 188787 7945 class 35 0 24 Deinococci 1 1 Thermales 15 0 16 order 3241 68933 3226 188786 15 Thermaceae 1 10 0 family 3 0 1 Marinithermus 2 genus 183 186191 species Marinithermus hydrothermalis 0 1 186192 180 genus 0 2 65551 507 species 1 Meiothermus silvanus 0 52022 168 1 0 Meiothermus ruber species 339 277 2216 270 8 Thermus 1 8 0 genus 795 274 0 Thermus thermophilus 1 species 282 456163 1 Thermus parvatiensis 0 species species 1 Thermus brockianus 0 56956 210 2619321 199 no rank 0 1 0 Thermus sp. CCB_US3_UF1 1 species 199 1111069 271 319 species 1 0 Thermus aquaticus 56957 257 species 0 Thermus oshimai 1 37636 146 species 1 Thermus scotoductus 0 1 0 Oceanithermus 1 2 genus 310 208447 0 Oceanithermus profundus 1 species 309 187137 order Deinococcales 1 29 0 15 118964 4344 1 Deinococcaceae 0 16 14 family 4315 183710 1298 4299 genus 13 21 0 Deinococcus 1 species 1 Deinococcus deserti 0 310783 121 1182571 308 species 1 0 Deinococcus swuensis 798 55148 1 Deinococcus proteolyticus 0 species species 1 0 Deinococcus gobiensis 502394 439 0 Deinococcus soli Cha et al. 2016 1 species 486 1309411 species Deinococcus geothermalis 0 1 68909 263 species 0 Deinococcus peraridilitoris 1 432329 271 236 1182568 1 0 Deinococcus puniceus species 0 1 no rank 301 2623546 species 0 Deinococcus sp. NW-56 1 2080419 301 1768108 347 species Deinococcus actinosclerus 0 1 species 1 Deinococcus radiodurans 0 1299 301 1 0 Deinococcus maricopensis species 407 309887 0 3 order 336 2762275 family 0 3 1 Trueperaceae 3 332247 336 332248 333 genus Truepera 1 0 4 2 species Truepera radiovictrix 0 1 332249 329 201174 343179 phylum Actinobacteria 1 0 1 622 84995 515 class 5 0 order Rubrobacterales 1 5 0 5 84996 515 family 4 4 0 Rubrobacteraceae 1 84997 510 genus 3 1 Rubrobacter 0 1 42255 506 Rubrobacter radiotolerans 0 1 species 209 42256 1 Rubrobacter xylanophilus 0 species 296 49319 no rank 4 0 1752188 558 species Actinobacteria bacterium IMCC19121 0 1 1848754 267 83 1848255 1 0 Actinobacteria bacterium IMCC25003 species 101 1848756 1 Actinobacteria bacterium IMCC26103 0 species 107 1848755 Actinobacteria bacterium IMCC26077 0 1 species 333795 1760 Actinobacteria 1 0 1053 575 class 166 1643683 2 0 order 0 2 family 166 85032 28048 166 genus 0 2 Acidothermus 1 2 164 28049 1 Acidothermus cellulolyticus 0 species 0 2 order 588 1643684 2 0 4 1 Nakamurellaceae family 588 85031 53460 584 genus 1 0 584 53461 0 Nakamurella multipartita 1 species 48 0 Frankiales 1 7 order 6065 85013 family 0 21 Frankiaceae 1 6 74712 6017 1854 5996 genus 5 15 0 1 Frankia 106370 1718 species 1 Frankia casuarinae 0 1 Frankia alni 0 species 2034 1859 no rank 1 0 2632575 1138 1138 298653 Frankia sp. EAN1pec 0 1 species 1091 298654 0 Frankia inefficax 1 species order 40 1 Pseudonocardiales 0 31 85010 25550 family 103 0 Pseudonocardiaceae 1 39 2070 25519 genus 6 0 48 1 Actinoalloteichus 65496 4613 1442 1612552 1 0 Actinoalloteichus sp. ADI127-7 species 340345 418 species Actinoalloteichus hymeniacidonis 0 1 0 2 no rank 1747 2644606 655 2072503 1 0 Actinoalloteichus sp. AHMU CJ021 species 1 0 Actinoalloteichus sp. GBA129-24 species 1092 1612551 958 1470176 1 Actinoalloteichus hoggarensis 0 species 43356 871 genus 1 Kutzneria 0 7 2 species 1 0 Kutzneria albida 43357 864 genus Actinosynnema 1 0 11 3 40566 2483 species Actinosynnema pretiosum 0 1 42197 1360 species 1 0 Actinosynnema mirum 40567 1112 Kibdelosporangium 1 0 2 2 genus 910 2029 1 0 Kibdelosporangium phytohabitans species 908 860235 genus 2 2 0 Alloactinosynnema 1 674734 908 0 1 no rank 906 2636053 1653480 906 species 0 Alloactinosynnema sp. L-07 1 1851 416 genus 1 Saccharomonospora 1 0 2 1852 415 species 1 Saccharomonospora viridis 0 0 1 genus 999 165301 1586287 999 species Lentzea guizhouensis 0 1 546 142577 0 1 genus 1 Prauserella marina 0 species 546 530584 genus 0 3 1 Saccharopolyspora 2 1835 755 species 1 0 Saccharopolyspora erythraea 1836 752 1 Amycolatopsis 0 41 7 genus 5060 1813 no rank 0 2 2618356 1343 1 Amycolatopsis sp. BJA-103 0 species 642 1911175 1896961 701 species 1 Amycolatopsis sp. AA4 0 31958 1284 species 0 Amycolatopsis orientalis 1 1 Amycolatopsis methanolica 0 species 637 1814 208439 748 species 1 Amycolatopsis japonica 0 1007 33910 Amycolatopsis mediterranei 0 1 species genus 8 1 Pseudonocardia 0 61 1847 6744 965 240495 0 Pseudonocardia dioxanivorans 1 species no rank 6 0 2619320 5718 species Pseudonocardia sp. EC080610-09 0 1 1688404 1084 0 Pseudonocardia sp. HH130629-09 1 species 684 1641402 831 1096868 1 Pseudonocardia sp. EC080625-04 0 species species Pseudonocardia sp. EC080619-01 0 1 1096856 909 0 Pseudonocardia sp. AL041005-10 1 species 894 445576 1316 1690815 1 0 Pseudonocardia sp. HH130630-07 species 2071 1111 genus 1 Saccharothrix 5 0 2 species 0 Saccharothrix espanaensis 1 103731 1106 85014 569 order 1 Glycomycetales 1 0 3 family 2 0 1 Glycomycetaceae 1 85034 568 283810 567 genus 1 0 567 283811 Stackebrandtia nassauensis 0 1 species order 20 9 0 Micromonosporales 1 85008 10647 Micromonosporaceae 1 48 0 19 family 10638 28056 genus 4 12 0 1 Micromonospora 1873 2345 1 0 no rank 865 2617518 865 648999 1 0 Micromonospora sp. L5 species 47850 860 species Micromonospora aurantiaca 0 1 608 1003110 0 Verrucosispora maris 1 species 1865 4391 genus 6 0 39 Actinoplanes 1 857 1866 Actinoplanes missouriensis 0 1 species 2626549 2705 no rank 0 3 953 649831 0 Actinoplanes sp. N902-109 1 species Actinoplanes sp. SE50 0 1 species 876 2033844 876 134676 Actinoplanes sp. SE50/110 0 1 species species 0 Actinoplanes friuliensis 1 196914 790 168694 1028 genus 2 0 1 Salinispora 3 168695 511 species 1 Salinispora tropica 0 species Salinispora arenicola 0 1 168697 515 genus 4 0 16 Plantactinospora 1 673534 2822 2631981 2806 no rank 0 3 species 1 0 Plantactinospora sp. BC1 2108470 856 Plantactinospora sp. KBS50 0 1 species 961 2024580 989 2071627 1 0 Plantactinospora sp. BB1 species genus 1 0 Verrucosispora 84593 4 8 0 1 Geodermatophilales 1 order 2102 1643682 family 7 1 Geodermatophilaceae 0 16 85030 2101 genus 2 1 Blastococcus 0 5 38501 663 Blastococcus saxobsidens 0 1 species 658 138336 736 88138 2 1 Modestobacter 0 4 genus 732 477641 0 Modestobacter marinus 1 species genus 2 1 Geodermatophilus 1 0 1860 686 685 1861 Geodermatophilus obscurus 0 1 species 393 1643818 2 0 no rank 393 147067 2 1 Thermobispora 0 1 genus 392 2006 1 0 Thermobispora bispora species 18 1 Actinomycetales 2 0 order 3040 2037 2049 3038 family 7 0 Actinomycetaceae 1 17 2529408 174 genus 0 1 species 0 Actinomyces meyeri 1 52773 174 185 2050 1 0 genus species 1 0 Mobiluncus curtisii 2051 185 1 0 genus 85 1653174 1 0 Actinotignum schaalii species 85 59505 2 1 Trueperella 0 4 genus 156 1069494 0 Trueperella pyogenes 1 species 152 1661 genus 9 28 0 Actinomyces 1 1654 2361 0 Actinomyces pacaensis 1 species 55 1852377 species 1 Actinomyces sp. VUL4_3 0 1912795 82 species 1 0 Actinomyces radicidentis 111015 503 1 Actinomyces oris 0 species 236 544580 2609248 1206 no rank 3 0 1 Actinomyces sp. oral taxon 897 0 species 282 2081702 1 0 Actinomyces sp. oral taxon 414 species 542 712122 species 1 Actinomyces sp. Chiba101 0 1851395 382 1960083 251 species 1 Actinomyces gaoshouyii 0 28263 70 genus 2 1 Arcanobacterium 1 0 Arcanobacterium haemolyticum 0 1 species 69 28264 85006 43982 order Micrococcales 1 166 0 134 9 19 0 Dermabacteraceae 1 family 4305 85020 43668 3647 genus 1 Brachybacterium 0 15 6 Brachybacterium ginsengisoli 0 1 species 468 1331682 2017485 472 species Brachybacterium sp. VR2415 0 1 522 2623841 1 0 no rank species 0 Brachybacterium sp. P6-10-X1 1 1903186 522 species 0 Brachybacterium faecium 1 43669 954 0 Brachybacterium sp. VM2412 1 species 1216 2017484 472568 521 genus 0 1 521 472569 1 Devriesea agamarum 0 species 36739 118 genus 0 1 1630135 118 species Dermabacter vaginalis 0 1 85021 2026 family 9 1 0 Intrasporangiaceae 1 479 267408 1 Arsenicicoccus 0 3 2 genus 2663846 476 no rank 1 0 476 1658671 1 Arsenicicoccus sp. oral taxon 190 0 species 2 1 Serinicoccus 0 4 genus 590 265976 species 1 0 Serinicoccus sp. JLT9 1758689 586 53357 383 genus 2 0 1 Intrasporangium 2 53358 381 species 1 0 Intrasporangium calvum Janibacter 1 0 2 2 genus 573 53457 571 857417 Janibacter indicus 0 1 species 85019 545 family 1 Brevibacteriaceae 8 0 3 genus 2 1 Brevibacterium 0 1 1696 537 species Brevibacterium linens 0 1 1703 536 85016 2247 family Cellulomonadaceae 1 7 0 6 1707 2240 genus 15 0 1 Cellulomonas 5 1 0 Cellulomonas fimi species 555 1708 0 Cellulomonas gilvus 1 species 476 11 species 1 Cellulomonas flavigena 0 1711 657 no rank 0 1 2620175 537 species Cellulomonas sp. PSBB021 0 1 2003551 537 85018 325 family 0 1 1862 325 genus 1 0 species 0 Dermatophilus congolensis 1 1863 325 145360 660 family 1 Sanguibacteraceae 0 1 3 2 2 0 1 Sanguibacter genus 659 60919 Sanguibacter keddieii 0 1 species 657 60920 4101 85017 9 1 Promicromonosporaceae 0 23 family 254250 1377 genus 2 0 1 Isoptericola 3 372663 804 species 1 Isoptericola dokdonensis 0 139208 571 species 0 Isoptericola variabilis 1 157920 1882 genus 0 3 Cellulosimicrobium 1 3 species 0 Cellulosimicrobium cellulans 1 1710 717 1162 2624466 1 0 no rank species 0 Cellulosimicrobium sp. TH-20 1 1980001 1162 819 186188 0 7 1 Xylanimonas 2 genus species Xylanimonas cellulosilytica 0 1 186189 812 680 125316 Beutenbergiaceae 1 5 0 3 family 84756 675 genus 1 0 1 Beutenbergia 2 84757 674 species 0 Beutenbergia cavernae 1 no rank 0 2 577468 38 2038 38 genus 2 0 2 1 Tropheryma 0 Tropheryma whipplei 1 species 36 2039 family 6 1 Dermacoccaceae 0 35 145357 1170 genus 0 6 1 Kytococcus 2 57499 229 species Kytococcus sedentarius 0 1 1276 223 0 1 genus 354 745364 species 0 Luteipulveratus mongoliensis 1 571913 354 Dermacoccus 1 0 3 2 genus 552 57495 Dermacoccus nishinomiyaensis 0 1 species 549 1274 46 0 66 Microbacteriaceae 1 family 17008 85023 genus 0 1 33877 612 612 453304 1 Agromyces aureus 0 species 2034 1514 genus Curtobacterium 1 0 15 4 no rank 0 2 257496 1055 Curtobacterium sp. BH-2-1-1 0 1 species 410 1905847 Curtobacterium sp. MR_MD2014 0 1 species 645 1561023 1 Curtobacterium pusillum 0 species 444 69373 843 110932 2 1 Leifsonia 1 0 genus 842 1575 1 Leifsonia xyli 0 species 337004 227 genus 2 0 2 Microcella 1 225 279828 Microcella alkaliphila 0 1 species genus 3 0 4 1 Rathayibacter 33886 765 371 33888 0 Rathayibacter tritici 1 species 145458 390 species 0 Rathayibacter toxicus 1 33882 5521 genus 40 0 1 Microbacterium 14 species 0 Microbacterium testaceum 1 2033 411 300019 390 species Microbacterium paludicola 0 1 Microbacterium aurum 0 1 species 408 36805 1 0 Microbacterium hominis species 492 162426 species Microbacterium chocolatum 0 1 84292 323 3457 2609290 0 8 no rank 1 Microbacterium sp. TPU 3598 0 species 310 1938334 428 1906742 0 Microbacterium sp. BH-3-3-3 1 species 1916917 328 species 1 0 Microbacterium sp. 1.5R 1 0 Microbacterium sp. XT11 species 347 367477 species 1 Microbacterium sp. No. 7 0 1714373 736 399 1795053 0 Microbacterium sp. PAMC 28756 1 species 2103230 344 species 1 Microbacterium sp. str. 'China' 0 565 1696072 1 Microbacterium sp. CGR1 0 species 3 0 3 Cryobacterium 1 genus 713 69578 328 2649013 1 0 no rank 1978566 328 species 1 0 Cryobacterium sp. LW097 382 670052 0 Cryobacterium arcticum 1 species 191 1655488 0 2 no rank clade 0 2 1655489 191 529883 191 genus 2 0 77 529884 0 Rhodoluna lacicola 1 species 114 535712 0 Candidatus Rhodoluna planktonica 1 species 518733 344 genus 2 0 3 Microterricola 1 1 Microterricola viridarii 0 species 341 412690 1759331 501 genus 0 1 Cnuibacter 1 2 500 1619308 0 Cnuibacter physcomitrellae 1 species 176 1434032 1 0 genus 176 1159327 1 0 Pontimonas salivibrio species 447237 3005 genus 0 2 Frondihabitans 1 2 0 1 no rank 3003 2626248 1 0 Frondihabitans sp. PAMC 28766 species 3003 1795630 1 0 genus 63 1705353 0 Aurantimicrobium minutum 1 species 63 708131 1573 2467 genus 0 27 1 Clavibacter 6 28447 2440 species 5 493 0 1 Clavibacter michiganensis subspecies 1 0 Clavibacter sepedonicus 31964 577 33014 433 subspecies 1 Clavibacter insidiosus 0 467 31963 1 Clavibacter nebraskensis 0 subspecies 1 Clavibacter capsici 0 subspecies 470 1874630 86 85022 0 1 family genus 0 1 43673 86 species 1 0 Jonesia denitrificans 43674 86 10625 1268 48 0 1 Micrococcaceae 35 family genus 4 Pseudarthrobacter 1 0 8 1742993 1093 276 121292 0 Pseudarthrobacter sulfonivorans 1 species 252 85085 1 Pseudarthrobacter chlorophenolicus 0 species 0 Pseudarthrobacter phenanthrenivorans 1 species 557 361575 genus 1 0 1742989 250 species 1 Glutamicibacter arilaitensis 0 256701 250 genus 0 1 1742992 197 43663 197 species Paenarthrobacter aurescens 0 1 0 1 genus 233 2078575 1618207 233 species 1 0 Arthrobacter sp. IHBB 11108 32207 301 genus 2 0 Rothia dentocariosa 0 1 species 83 2047 43675 218 species 1 0 Rothia mucilaginosa 1 0 genus 308 1868332 308 556325 1 Neomicrococcus aestuarii 0 species 2 Micrococcus 1 0 2 genus 334 1269 Micrococcus luteus 0 1 species 332 1270 6138 1663 15 26 0 1 Arthrobacter genus 235627 5230 no rank 0 12 species 1 Arthrobacter sp. ERGS1:01 0 1704044 741 0 Arthrobacter sp. ZXY-2 1 species 230 1806905 species 1 0 Arthrobacter sp. YC-RL1 1652545 251 species Arthrobacter sp. QXT-31 0 1 1357915 325 1690248 251 species Arthrobacter sp. LS16 0 1 284 1849032 Arthrobacter sp. U41 0 1 species 1663 2079227 0 Arthrobacter sp. PGP41 1 species 166 1118963 1 0 Arthrobacter sp. Rue61a species species 1 0 Arthrobacter sp. YN 2020486 196 290399 580 species 1 0 Arthrobacter sp. FB24 220 1771959 1 Arthrobacter sp. ATCC 21022 0 species 1 0 Arthrobacter sp. PAMC 25486 species 323 1494608 292 37928 1 Arthrobacter crystallopoietes 0 species 1 Arthrobacter alpinus 0 species 590 656366 1043 57493 4 1 Kocuria 3 0 genus 71999 333 species 1 Kocuria palustris 0 72000 250 species 0 Kocuria rhizophila 1 1 Kocuria flava 0 species 457 446860 genus 0 1 Sinomonas 1 2 596707 587 37927 586 species 1 Sinomonas atrocyanea 0 93 1645 1 0 genus 93 1646 1 Renibacterium salmoninarum 0 species 892 622452 Kineosporiales 1 0 9 4 order 4 0 Kineosporiaceae 1 3 family 883 83778 2 2 0 1 Kineococcus genus 879 33981 131568 877 species 0 Kineococcus radiotolerans 1 order 12 Candidatus Nanopelagicales 1 0 5 2039638 1401 0 11 family 1396 2162846 775 622681 7 4 0 Candidatus Planktophila 1 genus 573600 158 species 1 Candidatus Planktophila limnetica 0 Candidatus Planktophila lacus 0 1 species 170 1884913 123 1884905 1 0 Candidatus Planktophila versatilis species Candidatus Planktophila dulcis 0 1 species 143 1884914 1884907 102 species 0 Candidatus Planktophila vernalis 1 75 1884904 1 0 Candidatus Planktophila sulfonica species genus Candidatus Nanopelagicus 1 1 0 4 2039639 621 1884916 261 species 1 0 Candidatus Nanopelagicus abundans 0 Candidatus Nanopelagicus hibericus 1 species 207 1884915 152 1884634 1 0 Candidatus Nanopelagicus limnes species order 2 0 622450 353 family 0 2 622451 353 Actinopolyspora 1 1 0 2 genus 353 1849 1 0 Actinopolyspora erythraea species 352 414996 Streptomycetales 1 0 247 82 order 140730 85011 2062 140483 family 299 0 Streptomycetaceae 1 81 0 1186 1 Streptomyces 75 genus 128441 1883 1926 1241 species 1 0 Streptomyces reticuli 805 29303 1 Streptomyces cattleya 0 species Streptomyces peucetius 0 1 species 761 1950 species Streptomyces xiamenensis 0 1 408015 667 0 Streptomyces noursei 1 species 1332 1971 species 1 Streptomyces cyaneogriseus 0 68192 831 1969 817 species 1 0 Streptomyces chartreusis 68202 1156 species Streptomyces fulvissimus 0 1 969 1437453 0 Streptomyces leeuwenhoekii 1 species 68570 11009 species 1 0 Streptomyces albulus Streptomyces sp. XZHG99 0 1 species 835 2049881 3396 47763 1 0 Streptomyces lydicus species 1642299 1571 species Streptomyces alfalfae 0 1 species Streptomyces griseochromogenes 0 1 68214 1110 species Streptomyces xinghaiensis 0 1 1038928 1073 1 0 Streptomyces avermitilis species 1285 33903 1 Streptomyces venezuelae 0 species 2577 54571 species 1 Streptomyces gilvosporeus 0 553510 1052 6215 1477431 2 0 species group 5209 1902 0 Streptomyces coelicolor 1 species 42239 1006 species 1 0 Streptomyces sampsonii Streptomyces collinus 0 1 species 1402 42684 species 1 0 Streptomyces vietnamensis 362257 1538 1916 1303 species 0 Streptomyces lividans 1 species Streptomyces ambofaciens 0 1 1889 1457 species 0 Streptomyces sp. S10(2016) 1 1783515 1060 1 Streptomyces scabiei 0 species 1609 1930 1 0 Streptomyces glaucescens species 1225 1907 1811 629295 2 0 species group 898 1482596 0 1 species subgroup 0 Streptomyces griseus 1 species 898 1911 1482558 913 species subgroup 0 1 1 0 Streptomyces globisporus species 913 1908 38300 861 species 0 Streptomyces pristinaespiralis 1 75293 14605 species 0 Streptomyces autolyticus 1 1444 68280 1 0 Streptomyces violaceusniger species 1616117 1715 species 0 Streptomyces formicae 1 1915 1812 species 0 Streptomyces lincolnensis 1 664 1169025 1 Streptomyces pratensis 0 species 0 Streptomyces malaysiensis 1 species 1702 92644 1935 879 species Streptomyces violaceoruber 0 1 species Streptomyces parvulus 0 1 146923 839 1 0 Streptomyces albus species 2818 1888 67267 1332 species 1 Streptomyces alboflavus 0 961 285473 1 0 Streptomyces rubrolavendulae species 1 Streptomyces hygroscopicus 0 species 3538 1912 1304 1914 Streptomyces lavendulae 0 1 species 1191 193462 1 Streptomyces niveus 0 species 0 24 no rank 32675 2593676 1 Streptomyces sp. CLI2509 0 species 1096 1984801 465541 1525 species Streptomyces sp. Mg1 0 1 1 Streptomyces sp. TN58 0 species 921 234612 species 1 0 Streptomyces sp. SirexAA-E 862751 833 1244 1961713 1 0 Streptomyces sp. MOE7 species species 0 Streptomyces sp. CFMR 7 1 1649184 1078 0 Streptomyces sp. P3 1 species 1807 2135430 species 1 Streptomyces sp. 3211 0 1964449 1658 1265601 687 species 1 Streptomyces sp. PAMC 26508 0 1394 2059884 Streptomyces sp. CMB-StM0423 0 1 species species 1 0 Streptomyces sp. CdTB01 1725411 1572 930 2094021 1 Streptomyces sp. WAC00288 0 species species 1 Streptomyces sp. RTd22 0 1841249 1163 1578 206662 1 Streptomyces sp. FR-008 0 species 1751294 811 species 1 0 Streptomyces sp. 4F 1316 1812480 Streptomyces sp. fd1-xmd 0 1 species 1561022 935 species 0 Streptomyces sp. CCM_MD2014 1 1495638 3171 species 1 Streptomyces sp. M56 0 1262452 1351 species 0 Streptomyces sp. 769 1 2593 1849967 Streptomyces sp. SAT1 0 1 species 1088 1661694 0 Streptomyces sp. Tue 6075 1 species 1972846 1957 species Streptomyces sp. Sge12 0 1 0 Streptomyces sp. S8 1 species 916 1837283 444103 1051 species Streptomyces sp. CNQ-509 0 1 2003 379067 1 0 Streptomyces bingchenggensis species species 1 0 Streptomyces pluripotens 1355015 1008 species 1 0 Streptomyces pactum 68249 2806 0 Streptomyces albireticuli 1 species 1024 1940 1901 985 species 0 Streptomyces clavuligerus 1 982 164348 1 0 Streptomyces puniciscabiei species 5 Kitasatospora 1 41 0 genus 11743 2063 0 Kitasatospora albolonga 1 species 6409 68173 1894 1175 species Kitasatospora aureofaciens 0 1 1853 2633591 1 0 no rank 0 Kitasatospora sp. MMS16-BH015 1 species 1853 2018025 species 1 0 Kitasatospora setae 2066 2265 8454 85009 1 Propionibacteriales 0 69 33 order family 0 25 Propionibacteriaceae 1 19 31957 4131 461 1912215 0 2 1 Acidipropionibacterium 2 genus 1748 459 species 1 0 Acidipropionibacterium acidipropionici genus 1 0 2801844 216 1750 216 species Pseudopropionibacterium propionicum 0 1 72763 1416 genus 1 Tessaracoccus 0 5 5 393 399497 1 Tessaracoccus flavescens 0 species 1332264 401 species 1 0 Tessaracoccus aquimaris 344 2635419 1 0 no rank 0 Tessaracoccus sp. T2.5-30 1 species 344 1909732 273 1610493 1 Tessaracoccus flavus 0 species 0 9 1 Cutibacterium 4 genus 433 1912216 33011 99 species 0 Cutibacterium granulosum 1 0 Cutibacterium acnes 1 species 146 1747 33010 179 species Cutibacterium avidum 0 1 29404 305 genus 0 1 1 Microlunatus 2 29405 304 species 0 Microlunatus phosphovorus 1 1 Propionibacterium 1 0 3 genus 1202 1743 no rank 0 1 2608905 71 0 Propionibacterium sp. oral taxon 193 1 species 71 671223 species 0 Propionibacterium freudenreichii 1 1744 1130 73 203133 1 0 genus 73 2633994 1 0 no rank 73 1871034 1 0 Propionimicrobium sp. Marseille-P3275 species family 13 25 0 Nocardioidaceae 1 85015 4254 2 Aeromicrobium 1 2 0 genus 451 2040 449 2041 0 Aeromicrobium erythreum 1 species 678 182639 4 0 Kribbella 1 2 genus 1 0 Kribbella flavida species 674 182640 2044 847 genus 2 0 8 Pimelobacter 1 2045 839 species 0 Pimelobacter simplex 1 0 2 Micropruina 1 2 genus 255 116071 75385 253 species 1 0 Micropruina glycogenica genus 4 Nocardioides 1 0 69 1839 1998 450734 871 species 0 Nocardioides dokdonensis 1 2045452 441 species Nocardioides sp. 78 0 1 no rank 1 0 2615069 617 species 1 0 Nocardioides sp. JS614 196162 617 0 28 1 Catenulisporales 4 order 7404 414714 3 1 Catenulisporaceae 29 0 family 7376 414877 0 14 1 Catenulispora 2 genus 7347 414878 304895 7333 species 1 Catenulispora acidiphila 0 85007 68543 order 160 0 303 1 Corynebacteriales family 1 0 316606 223 286801 223 genus 0 1 species 1 Segniliparus rotundus 0 286802 223 family 1 Gordoniaceae 0 1 9 85026 3087 8 6 0 Gordonia 1 genus 3086 2053 84595 400 species 1 Gordonia polyisoprenivorans 0 609 2054 Gordonia bronchialis 0 1 species 810 2657482 2 0 no rank 490 337191 Gordonia sp. KTR9 0 1 species species 1 Gordonia sp. YC-JH1 0 2059875 320 0 Gordonia phthalatica 1 species 407 1136941 396 2055 1 0 Gordonia terrae species 1 0 Gordonia iterans species 458 1004901 family 1 Corynebacteriaceae 25 0 52 1653 15152 genus Corynebacterium 1 110 0 51 1716 15127 1121358 256 species Corynebacterium doosanense 0 1 species Corynebacterium singulare 0 1 161899 142 1705 131 species Corynebacterium stationis 0 1 156978 209 species 0 Corynebacterium imitans 1 1 Corynebacterium ureicelerivorans 0 species 160 401472 1718 600 species 1 Corynebacterium glutamicum 0 223 1717 Corynebacterium diphtheriae 0 1 species species 0 Corynebacterium epidermidicanis 1 1050174 90 35755 100 species 0 Corynebacterium kutscheri 1 1 Corynebacterium casei 0 species 121 160386 species 1 0 Corynebacterium efficiens 152794 180 no rank 2 0 2624378 591 species Corynebacterium sp. NML98-0116 0 1 702967 486 species 0 Corynebacterium sp. ATCC 6931 1 1487956 105 1 Corynebacterium sphenisci 0 species 436 191493 191 146827 0 Corynebacterium simulans 1 species 1 0 Corynebacterium flavescens species 135 28028 1727 470 species 1 0 Corynebacterium variabile Corynebacterium marinum 0 1 species 343 349751 191610 169 species 0 Corynebacterium atypicum 1 234 42817 Corynebacterium argentoratense 0 1 species 94 161896 1 Corynebacterium camporealensis 0 species species 1 Corynebacterium cystitidis 0 35757 255 575200 271 species 0 Corynebacterium maris 1 313 203263 Corynebacterium aquilae 0 1 species 360 225326 1 Corynebacterium halotolerans 0 species 3612 1072256 1 0 Corynebacterium uterequi species species 1 Corynebacterium kroppenstedtii 0 161879 93 1652495 103 species 1 Corynebacterium crudilactis 0 1 Corynebacterium urealyticum 0 species 150 43771 166 1721 1 0 Corynebacterium callunae species 181 1404244 0 Corynebacterium glyciniphilum 1 species Corynebacterium falsenii 0 1 species 285 108486 107 571915 Corynebacterium mustelae 0 1 species 1 0 Corynebacterium frankenforstense species 419 1230998 90 258224 1 Corynebacterium resistens 0 species species 1 0 [Brevibacterium] flavum 92706 260 330 43770 0 Corynebacterium striatum 1 species species 1 0 Corynebacterium terpenotabidum 89154 346 208 187491 0 Corynebacterium glaucum 1 species species 1 0 Corynebacterium lactis 1231000 122 1 Corynebacterium pseudotuberculosis 0 species 178 1719 0 Corynebacterium testudinoris 1 species 539 136857 493 1223514 Corynebacterium humireducens 0 1 species species 0 Corynebacterium aurimucosum 1 169292 120 species 1 0 Corynebacterium vitaeruminis 38305 442 38289 234 species Corynebacterium jeikeium 0 1 species 1 0 Corynebacterium phocae 161895 109 125 1408191 Corynebacterium deserti 0 1 species 1697 92 species 0 Corynebacterium ammoniagenes 1 species 0 Corynebacterium ulcerans 1 65058 139 1597 85028 1 Tsukamurellaceae 0 5 4 family 1592 2060 1 Tsukamurella 0 4 3 genus 1 0 Tsukamurella paurometabola species 523 2061 1065 57704 0 Tsukamurella tyrosinosolvens 1 species 85029 870 family 4 1 Dietziaceae 3 0 867 37914 3 0 3 1 Dietzia genus 499555 259 species Dietzia timorensis 0 1 605 2617939 1 0 no rank 712270 605 species 0 Dietzia sp. oral taxon 368 1 no rank 1 0 697024 157 1847725 157 genus 1 0 species 1 Lawsonella clevelandensis 0 1528099 157 family 57 1 Mycobacteriaceae 0 28 1762 27924 14789 1763 569 0 Mycobacterium 1 34 genus species 1 0 Mycobacterium ulcerans 1809 438 0 Mycobacterium marinum 1 species 882 1781 120793 4001 species group 0 8 species 1 Mycobacterium paraintracellulare 0 1138383 185 species 1 Mycobacterium colombiense 0 339268 448 273 701042 1 0 Mycobacterium marseillense species 1112 1767 4 0 293 1 Mycobacterium intracellulare species 1203599 231 subspecies 1 Mycobacterium yongonense 0 subspecies 1 Mycobacterium chimaera 0 222805 447 subspecies 1 Mycobacterium indicus pranii 0 35617 141 species Mycobacterium avium 0 1 1764 1983 4 0 species group 1735 77643 78331 269 species 1 Mycobacterium canettii 0 3 0 538 Mycobacterium tuberculosis 1 species 1466 1773 1765 470 biotype 1 0 Mycobacterium bovis 458 33894 1 Mycobacterium africanum 0 biotype 0 13 no rank 5022 2642494 1561223 175 species 0 Mycobacterium sp. QIA-37 1 1168287 146 species 1 Mycobacterium sp. MOTT36Y 0 328 1570328 Mycobacterium sp. NRRL B-3805 0 1 species species 1 Mycobacterium sp. PYR15 0 2051552 455 Mycobacterium sp. VKM Ac-1817D 0 1 species 360 1273687 0 Mycobacterium sp. KMS 1 species 468 189918 species 1 Mycobacterium sp. WY10 0 1920667 377 1 Mycobacterium sp. EPa45 0 species 344 1545728 1 0 Mycobacterium sp. djl-10 species 485 1879023 0 Mycobacterium sp. JLS 1 species 435 164757 Mycobacterium sp. JS623 0 1 species 501 212767 species 1 0 Mycobacterium sp. MCS 164756 436 1682113 512 species 1 0 Mycobacterium sp. YC-RL4 626 482462 Mycobacterium dioxanotrophicus 0 1 species 1 0 Mycobacterium haemophilum species 234 29311 Mycobacterium liflandii 0 1 species 393 261524 1 0 Mycobacterium kansasii species 438 1768 1 Mycobacterium leprae 0 species 66 1769 1 0 species group 385 2249310 385 722731 1 Mycobacterium shigaense 0 species 0 5 genus 5072 670516 2336 83262 1 0 Mycobacterium immunogenum species 252 1578165 Mycobacterium saopaulense 0 1 species 36809 1723 species 0 Mycobacterium abscessus 1 Mycobacterium stephanolepidis 0 1 species 241 1520670 520 1774 1 0 Mycobacterium chelonae species genus 2 0 1 Hoyosella 2 697025 262 639313 260 species Hoyosella subflava 0 1 6992 1866885 13 0 genus species Mycobacterium aurum 0 1 1791 907 654 1771 1 Mycobacterium phlei 0 species species 1 0 Mycobacterium smegmatis 1772 517 species 0 Mycobacterium goodii 1 134601 573 species 1 Mycobacterium gilvum 0 1804 807 species 1 Mycobacterium litorale 0 758802 429 species Mycobacterium chubuense 0 1 1800 570 332 1797 1 0 Mycobacterium thermoresistibile species species 1 0 Mycobacterium fortuitum 1766 364 1795 328 species 1 Mycobacterium neoaurum 0 species 1 0 Mycobacterium rhodesiae 36814 382 1810 601 species 0 Mycobacterium vaccae 1 110539 528 species 1 0 Mycobacterium vanbaalenii 781 1073531 2 0 genus species 0 Mycobacterium sinense 1 875328 432 1788 349 species Mycobacterium terrae 0 1 85025 19230 family 50 0 1 Nocardiaceae 31 genus 23 Rhodococcus 1 236 0 1827 13628 species 0 Rhodococcus opacus 1 37919 2768 species 1 0 Rhodococcus ruber 1830 818 0 Rhodococcus rhodochrous 1 species 522 1829 1 0 Rhodococcus jostii species 818 132919 103816 870 species 1 Rhodococcus pyridinivorans 0 1828 427 species 1 Rhodococcus fascians 0 192944 4810 no rank 12 0 0 Rhodococcus sp. WMMA185 1 species 242 679318 1 Rhodococcus sp. WB1 0 species 744 1033922 251 1653479 1 0 Rhodococcus sp. PBTS 2 species 1807790 193 species 1 0 Rhodococcus sp. BH4 1 0 Rhodococcus sp. PBTS 1 species 407 1653478 247 1045808 1 Rhodococcus sp. YL-1 0 species 1570939 310 species 1 Rhodococcus sp. 2G 0 1 0 Rhodococcus sp. MTM3W5.2 species 965 1805827 1 0 Rhodococcus sp. B7740 species 352 1564114 1 0 Rhodococcus sp. p52 species 617 935199 1 Rhodococcus sp. 008 0 species 222 1723645 species Rhodococcus sp. H-CA8f 0 1 1727214 260 species Rhodococcus qingshengii 0 1 334542 437 43767 454 species 0 Rhodococcus hoagii 1 1 0 Rhodococcus erythropolis species 729 1833 species 1 0 Rhodococcus aetherivorans 191292 739 5552 1817 7 1 Nocardia 67 0 genus 1 0 Nocardia terpenica species 741 455432 0 Nocardia brasiliensis 1 species 1505 37326 729 37330 1 0 Nocardia nova species species 1 0 Nocardia farcinica 37329 873 720 37332 0 Nocardia seriolae 1 species 135487 917 species Nocardia cyriacigeorgica 0 1 85012 6479 order 16 1 Streptosporangiales 11 0 Nocardiopsaceae 1 0 8 7 family 2367 83676 197 83677 2 1 Thermobifida 1 0 genus 1 Thermobifida fusca 0 species 196 2021 genus 1 Nocardiopsis 0 5 4 2013 2162 2014 1079 species 1 0 Nocardiopsis dassonvillei 571 280236 1 Nocardiopsis gilva 0 species 507 53437 Nocardiopsis alba 0 1 species 616 2012 Thermomonosporaceae 1 5 0 3 family 611 2019 2 0 1 1 Thermomonospora genus 610 2020 Thermomonospora curvata 0 1 species 1 Streptosporangiaceae 0 9 5 family 3485 2004 Nonomuraea 1 0 2 2 genus 1922 83681 1 0 no rank 1920 2593643 1 Nonomuraea sp. ATCC 55076 0 species 1920 1909395 1554 2000 Streptosporangium 1 9 0 2 genus 2001 1545 species Streptosporangium roseum 0 1 5275 85004 24 0 14 Bifidobacteriales 1 order 31953 5261 family Bifidobacteriaceae 1 39 0 23 0 1 genus 166 196081 species Scardovia inopinata 0 1 78259 166 196082 133 genus 1 0 78258 133 species 1 0 Parascardovia denticolens genus 1 0 2701 420 420 2702 1 0 Gardnerella vaginalis species 4503 1678 1 Bifidobacterium 0 41 19 genus 1 0 Bifidobacterium adolescentis species 181 1680 1684 170 species 1 0 Bifidobacterium asteroides species 0 Bifidobacterium angulatum 1 1683 153 species 1 0 Bifidobacterium choerinum 35760 297 0 Bifidobacterium scardovii 1 species 419 158787 species 1 Bifidobacterium animalis 0 28025 179 1 Bifidobacterium indicum 0 species 123 1691 1 0 Bifidobacterium coryneforme species 56 1687 33905 126 species 0 Bifidobacterium thermophilum 1 225 1686 1 Bifidobacterium catenulatum 83 0 2 species 142 630129 0 Bifidobacterium kashiwanohense 1 subspecies 1 Bifidobacterium dentium 0 species 272 1689 1 Bifidobacterium pseudocatenulatum 0 species 111 28026 1 0 Bifidobacterium bifidum species 255 1681 638619 315 species 1 Bifidobacterium actinocoloniiforme 0 species 1 0 Bifidobacterium breve 1685 426 1694 294 species 0 Bifidobacterium pseudolongum 1 1 Bifidobacterium longum 0 species 860 216816 no rank 1 0 52018 109 109 1650658 1 Actinobacteria bacterium IMCC26256 0 species 84992 959 class 6 6 0 1 Acidimicrobiia 953 84993 17 0 Acidimicrobiales 1 5 order family 2 0 2448023 640 682522 640 genus 2 1 0 1 Ilumatobacter 639 467094 Ilumatobacter coccineus 0 1 species 2 Acidimicrobiaceae 1 0 1 family 296 84994 295 53634 0 1 genus 0 Acidimicrobium ferrooxidans 1 species 295 53635 0 1 Thermoleophilia 1 3 class 4323 1497346 588673 4322 order 2 Solirubrobacterales 1 15 0 family 1 0 320583 4307 genus 0 1 191494 4307 1 0 Conexibacter woesei species 4307 191495 3028 84998 1 Coriobacteriia 12 0 28 class 0 10 1 Coriobacteriales 12 order 1179 84999 family 4 1 Coriobacteriaceae 2 0 84107 392 no rank 1 0 84113 116 1531429 116 species Coriobacteriaceae bacterium 68-1-3 0 1 102106 163 genus 1 0 163 74426 0 Collinsella aerofaciens 1 species genus 0 1 33870 111 111 33871 0 Coriobacterium glomerans 1 species family 0 8 Atopobiaceae 1 7 1643824 777 82 2767353 1 0 genus 82 1382 1 Atopobium parvulum 0 species genus 1 Atopobium 0 1380 2 4 Olsenella 1 2 0 genus 685 133925 1 0 no rank 239 2638792 239 712411 Olsenella sp. oral taxon 807 0 1 species species 1 0 Olsenella uli 133926 150 species Olsenella sp. Marseille-P2300 0 1 1805478 294 1837 1643822 Eggerthellales 1 18 0 15 order 14 Eggerthellaceae 1 0 5 family 1819 1643826 0 1 genus 147 1981050 1944646 147 species 0 Phoenicibacter massiliensis 1 88 79603 1 0 genus 88 79604 0 Denitrobacterium detoxificans 1 species 96 84162 1 0 genus species Cryptobacterium curtum 0 1 84163 96 2 0 2 1 Adlercreutzia genus 195 447020 446660 193 species Adlercreutzia equolifaciens 0 1 84111 453 genus Eggerthella 1 0 4 3 1 Eggerthella lenta 0 species 353 84112 no rank 1 0 2648737 96 0 Eggerthella sp. YY7918 1 species 96 502558 1 Slackia 0 2 2 genus 180 84108 1 0 Slackia heliotrinireducens species 178 84110 644652 655 genus 3 0 6 Gordonibacter 1 species 0 Gordonibacter massiliensis 1 1841863 329 320 1335613 1 Gordonibacter urolithinfaciens 0 species 0 33 phylum 4690 200795 class 0 6 189775 660 0 2 order 107 189776 189777 107 family 0 1 Thermomicrobiaceae 1 2 1 0 genus 106 499 106 500 0 Thermomicrobium roseum 1 species 0 4 subclass 553 85000 85001 553 order Sphaerobacterales 1 3 0 4 550 255728 0 3 suborder 2 0 Sphaerobacteraceae 1 3 family 550 85002 genus Sphaerobacter 1 0 2 2 2056 548 species Sphaerobacter thermophilus 0 1 2057 546 376 475962 0 2 class 376 475963 2 0 order family 0 2 475964 376 376 233191 Caldilinea 1 1 0 2 genus 133453 375 species Caldilinea aerophila 0 1 0 6 class 298 301297 Dehalogenimonas 1 0 3 3 genus 121 670486 58 552810 0 Dehalogenimonas lykanthroporepellens 1 species 60 1839801 0 Dehalogenimonas formicexedens 1 species 3 0 order 177 1202465 177 1202464 0 3 Dehalococcoidaceae 1 3 family 61434 174 genus 0 2 1 0 Dehalococcoides mccartyi species 138 61435 237581 36 no rank 0 1 36 1522671 0 Dehalococcoides sp. UCH007 1 species 1382928 1159 class 2 0 1 Ardenticatenia 5 4 Ardenticatenales 1 0 20 order 1157 1382929 3 0 1 1 Ardenticatenaceae family 1137 1382930 genus 0 1 1 Candidatus Promineofilum 2 1988031 1136 1135 1806508 Candidatus Promineofilum breve 0 1 species 0 1 Anaerolineae 1 6 class 522 292625 521 292629 5 0 1 Anaerolineales 1 order 4 Anaerolineaceae 1 2 0 family 520 292628 233189 108 genus 1 0 108 167964 1 Anaerolinea thermophila 0 species genus 0 1 2019482 309 species 0 Brevefilum fermentans 1 1986204 309 101 1324991 1 0 no rank 1 0 Anaerolineaceae bacterium oral taxon 439 species 101 1889813 32061 1675 class 8 0 32064 1675 order 1 Chloroflexales 0 7 8 1508594 775 suborder 5 0 1106 775 family 1 0 Chloroflexaceae 1 5 genus 1 Chloroflexus 0 10 4 1107 774 1 Chloroflexus aggregans 0 species 335 152260 2 Chloroflexus aurantiacus 1 0 214 species 429 1108 215 480224 1 Chloroflexus sp. Y-400-fl 0 strain suborder 2 0 1508595 893 1508635 893 family 2 0 genus 2 0 120961 893 120962 361 species Roseiflexus castenholzii 0 1 1 0 no rank 532 2609473 0 Roseiflexus sp. RS-1 1 species 532 357808 1859062 149 no rank 0 2 149 262406 Thermobaculum 1 1 0 2 genus 166501 148 species 0 Thermobaculum terrenum 1 263402 1783270 350 0 clade 230 456828 0 1 phylum genus 0 1 456826 230 456827 230 species 1 0 Candidatus Cloacimonas acidaminovorans phylum 0 8 142182 2447 219685 2447 class Gemmatimonadetes 1 0 9 8 219686 2438 order 7 21 0 1 Gemmatimonadales 219687 2417 family 0 14 1 Gemmatimonadaceae 6 1 Gemmatimonas 0 2 3 genus 891 173479 401 1379270 1 Gemmatimonas phototrophica 0 species 173480 488 species 1 0 Gemmatimonas aurantiaca 1706036 1512 genus Gemmatirosa 1 0 6 2 1 Gemmatirosa kalamazoonesis 0 species 1506 861299 2 0 phylum 544 65842 2 1 0 Fibrobacteria 1 class 544 204430 0 1 order 543 218872 204431 543 family 0 1 832 543 genus 1 0 543 833 1 Fibrobacter succinogenes 0 species 68336 260181 clade 339 0 22 0 phylum 2790 1090 22 1 Chlorobia 0 8 class 2790 191410 191411 2782 order 24 0 1 Chlorobiales 21 20 0 15 1 Chlorobiaceae family 2758 191412 0 7 1 Chloroherpeton 2 genus 175 100715 species Chloroherpeton thalassium 0 1 100716 168 genus 5 0 9 1 Prosthecochloris 1101 583 132 1102 Prosthecochloris aestuarii 0 1 species 442 2632826 3 0 no rank species 0 Prosthecochloris sp. CIB 2401 1 1868325 157 species 0 Prosthecochloris sp. GSB1 1 281093 104 181 1974213 1 Prosthecochloris sp. HL-130-GSB 0 species 1519 274493 0 8 no rank 218 1099 3 0 Pelodictyon 1 3 genus species 1 Pelodictyon phaeoclathratiforme 0 34090 126 0 Pelodictyon luteolum 1 species 89 1100 0 8 1 Chlorobium 5 genus 1301 1091 species 0 Chlorobium limicola 1 1092 181 species 1 0 Chlorobium phaeobacteroides 1096 840 species 1 0 Chlorobium chlorochromatii 337090 165 1094 107 species 1 Chlorobium phaeovibrioides 0 genus 26 0 1 Chlorobaculum 4 256319 466 1 0 Chlorobaculum limnaeum species 190 274537 127 274539 1 Chlorobaculum parvum 0 species species 1 Chlorobaculum tepidum 0 1097 123 976 256659 phylum 311 1 Bacteroidetes 18 0 1937959 1869 class 5 1 0 1 Saprospiria order 0 4 1 Saprospirales 4 1936988 1868 1937961 1389 family 0 1 0 1 genus 1389 2349 Haliscomenobacter hydrossis 0 1 species 1389 2350 89374 475 family 0 2 2 0 Saprospira 1 2 genus 475 1007 species Saprospira grandis 0 1 1008 473 13 1 Chitinophagia 2 0 class 4927 1853228 order Chitinophagales 1 9 0 12 1853229 4925 4916 563835 1 Chitinophagaceae 0 16 11 family genus 1 0 649460 379 477680 379 species 1 Filimonas lacunae 0 1174 354354 1 0 genus Niastella koreensis 0 1 species 1174 354356 genus 1 Arachidicoccus 0 7 2 1769012 459 452 2636138 1 0 no rank species 0 Arachidicoccus sp. BS20 1 1850526 452 379899 541 genus 1 0 Niabella 1 3 species 0 Niabella soli 1 446683 288 1 Niabella ginsenosidivorans 0 species 252 1176587 genus 0 2 79328 648 360 79329 1 Chitinophaga pinensis 0 species 2029983 288 species 1 Chitinophagaceae bacterium 13 0 genus 1 0 398041 1699 1699 1492898 1 Flavisolibacter tropicus 0 species 1 Flavobacteriia 0 62 145 class 200456 117743 144 Flavobacteriales 1 0 139 order 200394 200644 family 0 2 1853230 767 332102 767 genus 2 Fluviicola 1 0 3 764 191579 1 Fluviicola taffensis 0 species family 103 1 Flavobacteriaceae 510 0 49546 179767 104264 8815 genus 0 37 Cellulophaga 1 4 0 Cellulophaga algicola 1 species 2778 59600 0 Cellulophaga lytica 1 species 3095 979 1 Cellulophaga baltica 0 species 2905 76594 3 1 Winogradskyella 0 37 genus 5586 286104 2 0 no rank 5549 2615021 3327 754409 1 0 Winogradskyella sp. PG-2 species 1936080 2222 species 1 Winogradskyella sp. J14-2 0 genus 0 1 1209327 2452 1 Flavivirga eckloniae 0 species 2452 1803846 358023 3388 genus 2 1 Lutibacter 18 0 1622118 3370 species 1 0 Lutibacter profundi genus 6 0 126 1 Polaribacter 52959 39503 0 3 no rank 23453 196858 6480 313598 1 Polaribacter sp. MED152 0 species Polaribacter sp. BM10 0 1 species 7541 1529069 9432 2058137 1 Polaribacter sp. ALD11 0 species 996801 7601 species 1 0 Polaribacter reichenbachii Polaribacter vadi 0 1 species 8323 1774273 1 Tenacibaculum 0 37 5 genus 17608 104267 Tenacibaculum maritimum 0 1 species 3523 107401 6126 1850252 Tenacibaculum todarodis 0 1 species species 0 Tenacibaculum dicentrarchi 1 669041 3885 4037 584609 1 Tenacibaculum jejuense 0 species 291183 10068 genus 4 0 84 1 Lacinutrix 1 0 Lacinutrix venerupis species 3360 1486034 2647285 6624 no rank 2 0 3396 2057808 1 Lacinutrix sp. Bg11-31 0 species 3228 983544 Lacinutrix sp. 5H-3-7-4 0 1 species genus 2 1 0 1 Croceibacter 216431 2322 Croceibacter atlanticus 0 1 species 2321 313588 5163 326319 Dokdonia 1 62 0 4 genus 326320 1919 species Dokdonia donghaensis 0 1 no rank 2 0 2615033 3182 1614 983548 0 Dokdonia sp. 4H-3-7-5 1 species Dokdonia sp. MED134 0 1 species 1568 313590 Gramella 1 29 0 5 genus 3859 292691 411153 1263 species 1 0 Gramella forsetii 2126553 747 species 0 Gramella sp. SH35 1 species Gramella sp. LPB0144 0 1 1913577 1091 1486245 729 species 1 Gramella flava 0 1009 1176327 0 1 genus 1009 2636237 0 1 no rank species Aureitalea sp. RR4-38 0 1 2094025 1009 1889 61432 0 2 no rank 313 531844 1 0 Flavobacteriaceae bacterium 3519-10 species 1576 1150389 Flavobacteriaceae bacterium UJ101 0 1 species 1 0 genus 2811 1518147 1790137 2811 species 1 0 Wenyingzhuangia fucanilytica genus 0 77 Flavobacterium 1 9 237 16247 species 1 Flavobacterium columnare 0 996 2919 96345 1637 species 1 Flavobacterium psychrophilum 0 1423 1306519 1 0 Flavobacterium commune species species Flavobacterium johnsoniae 0 1 986 4282 0 Flavobacterium branchiophilum 1 species 1234 55197 1 Flavobacterium crassostreae 0 species 1275 1763534 1781 312277 1 0 Flavobacterium indicum species 1619 1492737 0 Flavobacterium gilvum 1 species 3878 76831 5 Myroides 1 55 0 genus species 1 Myroides odoratimimus 0 76832 1035 Myroides profundi 0 1 species 912 480520 2642485 1876 no rank 2 0 916 1458492 0 Myroides sp. ZB35 1 species species 1 Myroides sp. A21 0 1583100 960 2 1 Siansivirga 1 0 genus 2396 1204360 762954 2395 species 1 Siansivirga zeaxanthinifaciens 0 genus Capnocytophaga 1 0 89 15 1016 8834 500 1018 1 Capnocytophaga ochracea 0 species species 1 Capnocytophaga leadbetteri 0 327575 462 28189 769 species 1 Capnocytophaga cynodegmi 0 949 28188 1 0 Capnocytophaga canimorsus species species 1 0 Capnocytophaga haemolytica 45243 334 species 1 Capnocytophaga stomatis 0 1848904 573 1322 1019 1 0 Capnocytophaga sputigena species 550 1017 Capnocytophaga gingivalis 0 1 species no rank 6 0 2640652 3286 683 1945658 Capnocytophaga sp. H4358 0 1 species species 1 Capnocytophaga sp. oral taxon 323 0 1705617 449 1 0 Capnocytophaga sp. ChDC OS43 species 524 209053 0 Capnocytophaga sp. H2931 1 species 611 1945657 1316593 419 species 1 0 Capnocytophaga sp. oral taxon 864 0 Capnocytophaga sp. oral taxon 878 1 species 600 1316596 945 389486 1 0 genus 1 0 no rank 945 2648869 0 Sediminicola sp. YIK13 1 species 945 1453352 genus 2 Salegentibacter 1 0 1 143222 1536 2633436 1535 no rank 0 1 1535 1729720 1 Salegentibacter sp. T436 0 species 336276 2929 genus 2 1 0 1 Olleya 0 1 no rank 2928 2615019 2928 2058135 0 Olleya sp. Bg11-27 1 species 2711 1649495 1 0 genus 2622645 2711 no rank 1 0 1936081 2711 species 1 0 Seonamhaeicola sp. S2-3 112040 649 genus 1 0 649 63186 Zobellia galactanivorans 0 1 species 261827 2764 genus 0 1 1 Algibacter alginicilyticus 0 species 2764 1736674 genus 0 1 153265 1729 1729 101385 Aequorivita sublithincola 0 1 species 3 1 Muricauda 5 0 genus 1064 111500 325 516051 1 0 Muricauda lutaonensis species species 1 0 Muricauda ruestringensis 111501 734 954 178469 1 0 genus 616991 954 species 1 Arenibacter algicola 0 genus 0 1 393005 2059 1 Tamlana sp. UJ94 0 species 2059 2069432 225842 5148 genus Formosa 1 0 26 3 no rank 2 0 2644710 5122 Formosa sp. Hel3_A1_48 0 1 species 2102 1336795 1336794 3020 species 0 Formosa sp. Hel1_33_131 1 5 19 0 1 Nonlabens genus 5674 363408 no rank 0 2 2615035 2894 1476901 1318 species 0 Nonlabens sp. MIC269 1 2058134 1576 species Nonlabens sp. MB-3u-79 0 1 328515 1449 species 1 0 Nonlabens dokdonensis 1312 319236 1 0 Nonlabens sediminis species 7318 252356 21 0 Maribacter 1 5 genus species 0 Maribacter cobaltidurans 1 1178778 767 2615042 6530 no rank 0 3 species 0 Maribacter sp. HTCC2170 1 313603 1392 1836467 2016 species Maribacter sp. T28 0 1 0 Maribacter sp. 1_2014MBL_MicDiv 1 species 3122 1644130 0 1 genus 2131 417127 species 0 Zunongwangia profunda 1 398743 2131 genus 1 0 83612 2047 2047 57029 1 Psychroflexus torquis 0 species 3603 2700084 1 0 genus 1850246 3603 species 0 Lutibacter sp. LPB0138 1 genus 0 1 252306 168 168 252307 1 Robiginitalea biformata 0 species 14013 2762318 0 20 family 308865 4691 genus 1 Elizabethkingia 67 0 6 species 1 0 Elizabethkingia meningoseptica 238 701 1 Elizabethkingia anophelis 0 species 1588 1117645 species 1 0 Elizabethkingia miricola 172045 1024 693 1756149 1 Elizabethkingia genomosp. 3 0 species 618 1756150 1 Elizabethkingia genomosp. 4 0 species 0 10 no rank 7076 2782232 genus 9 48 0 1 Chryseobacterium 59732 6652 species 1 Chryseobacterium gallinarum 0 1324352 485 266 1265445 Chryseobacterium camelliae 0 1 species species Chryseobacterium piperi 0 1 558152 674 1817 1685010 1 0 Chryseobacterium glaciei species 1 0 Chryseobacterium indologenes species 1293 253 no rank 0 3 2593645 2069 species 1 0 Chryseobacterium sp. StRB126 878220 642 species 1 Chryseobacterium sp. IHB B 17019 0 1721091 652 species 0 Chryseobacterium sp. T16E-39 1 2015076 775 2782228 424 genus 1 0 424 536441 1 0 Chryseobacterium taklimakanense species 28250 498 genus 1 0 0 Ornithobacterium rhinotracheale 1 species 498 28251 1013 520 genus 0 1 1014 520 species Weeksella virosa 0 1 2 Riemerella 1 0 2 genus 1228 34084 1226 34085 0 Riemerella anatipestifer 1 species 0 4 no rank 1214 313602 881 336809 1 0 Candidatus Sulcia 1 2 genus 1 0 Candidatus Sulcia muelleri species 880 336810 1 Candidatus Walczuchella 2 0 2 genus 333 1940138 331 1415657 1 0 Candidatus Walczuchella monophlebidarum species family 2 0 1 Blattabacteriaceae 10 39782 3036 genus 0 42 1 Blattabacterium 9 34098 3034 1653831 439 species 1 Blattabacterium cuenoti 0 2213 2647581 0 6 no rank 39768 290 species 1 Blattabacterium sp. (Mastotermes darwiniensis) 0 395 367488 Blattabacterium sp. (Periplaneta americana) 0 1 species 1316444 427 species Blattabacterium sp. (Nauphoeta cinerea) 0 1 1186051 378 species 1 0 Blattabacterium sp. (Blaberus giganteus) Blattabacterium sp. (Blatta orientalis) 0 1 species 333 367806 624186 390 species 1 0 Blattabacterium sp. (Blattella germanica) 1 Blattabacterium punctulatus 0 species 340 164514 0 2 family 889 1333713 2 15 0 Owenweeksia 1 genus 889 267986 Owenweeksia hongkongensis 0 1 species 874 253245 2 0 family 569 1755828 569 1755829 Ichthyobacterium 1 0 7 2 genus species 1 Ichthyobacterium seriolicida 0 242600 562 768503 22746 class 57 19 0 Cytophagia 1 768507 22727 order 0 43 Cytophagales 1 56 15 1 Cytophagaceae 4 0 family 4853 89373 1008 105 1 0 genus 106 1008 species 0 Runella slithyformis 1 genus 2 Cytophaga 1 6 0 978 611 1 Cytophaga hutchinsonii 0 species 605 985 2 2 0 1 Leadbetterella genus 353 319458 species 1 Leadbetterella byssophila 0 316068 351 6 11 0 1 Spirosoma genus 2312 107 0 Spirosoma aerolatum 1 species 433 1211326 564064 162 species 0 Spirosoma rigui 1 species 1 0 Spirosoma sp. HA7 2057025 1009 329 1178516 Spirosoma montaniterrae 0 1 species 1379870 368 species 1 Spirosoma radiotolerans 0 229 861914 0 1 genus 2620963 229 no rank 0 1 0 Fibrella sp. ES10-3-2-2 1 species 229 1834519 336 120831 2 Dyadobacter 1 0 1 genus 0 Dyadobacter fermentans 1 species 335 94254 1 Hymenobacteraceae 0 9 16 family 6654 1853232 89966 4596 genus Hymenobacter 1 37 0 8 2615202 3455 no rank 5 0 800 1484116 1 Hymenobacter sp. PAMC 26554 0 species species 1 0 Hymenobacter sp. APR13 1356852 583 233 1385664 1 Hymenobacter sp. DG25B 0 species 1484118 1613 species 1 Hymenobacter sp. PAMC 26628 0 species 1 0 Hymenobacter sp. DG25A 1385663 226 0 Hymenobacter swuensis 1 species 580 1446467 1 Hymenobacter sedentarius 0 species 524 1411621 genus 0 6 1 Pontibacter 3 323449 597 species Pontibacter akesuensis 0 1 388950 261 1 Pontibacter korlensis 0 species 330 400092 1452 1379908 1 Rufibacter 0 6 4 genus no rank 2 0 2639626 962 species Rufibacter sp. DG31D 0 1 1379910 528 434 1379909 0 Rufibacter sp. DG15C 1 species 484 512763 1 Rufibacter tibetensis 0 species 2762301 1028 family 2 0 1028 869806 1 Marivirga 0 9 2 genus 1 0 Marivirga tractuosa species 1019 1006 family 3 1 Bernardetiaceae 3 0 1937968 1494 1937972 1491 genus Bernardetia 1 0 11 2 1 Bernardetia litoralis 0 species 1480 999 3 0 5 Flammeovirgaceae 1 family 4293 200667 0 1 no rank 2931 340671 1 0 Flammeovirgaceae bacterium 311 species 2931 1257021 0 1 genus 1357 59739 no rank 1 0 2637820 1357 1357 1191459 Flammeovirga sp. MY04 0 1 species 893 1853234 2 0 family genus 2 0 4 1 Persicobacter 59740 893 1 0 no rank 889 2664020 1085624 889 species 1 Persicobacter sp. JZB09 0 10 3 0 1 Cyclobacteriaceae family 2996 563798 0 8 Cyclobacterium 1 3 genus 1260 68288 species 0 Cyclobacterium amurskyense 1 320787 683 104 569 species 1 Cyclobacterium marinum 0 544 390846 13 0 1 Echinicola 2 genus 390884 531 species Echinicola vietnamensis 0 1 232244 752 genus Belliella 1 2 0 2 750 232259 0 Belliella baltica 1 species genus 6 0 1 Algoriphagus 2 246875 437 1727163 431 species 1 0 Algoriphagus sp. M8-2 4 0 family 473 1501348 1 Candidatus Amoebophilus 0 1 2 genus 334 281119 0 Candidatus Amoebophilus asiaticus 1 species 333 281120 2 2 0 Candidatus Cardinium 1 genus 139 273135 0 1 no rank 137 2641185 1 0 Cardinium endosymbiont of Encarsia pergandiella species 137 249402 12935 200643 61 1 Bacteroidia 11 0 class order 53 0 23 1 Bacteroidales 171549 10436 1 0 no rank 123 185291 0 Bacteroidales bacterium CF 1 species 123 1400053 5 0 no rank 1760 333046 genus 3 0 909656 1078 species 0 Bacteroides salanitronis 1 376805 542 269 357276 Bacteroides dorei 0 1 species 267 821 1 Bacteroides vulgatus 0 species 2 Candidatus Azobacteroides 1 2 0 genus 682 511434 511435 680 species 1 0 Candidatus Azobacteroides pseudotrichonymphae family 1 0 2005523 329 genus 0 1 346096 329 species 1 0 Paludibacter propionicigenes 185300 329 2 0 1 1 Barnesiellaceae family 129 2005519 128 397864 1 0 genus 0 Barnesiella viscericola 1 species 128 397865 171551 444 family 4 Porphyromonadaceae 1 2 0 836 442 genus 3 1 Porphyromonas 11 0 349 837 0 Porphyromonas gingivalis 1 species species Porphyromonas asaccharolytica 0 1 28123 82 2005525 1159 family 1 Tannerellaceae 0 6 6 195950 511 genus 2 0 0 Tannerella forsythia 1 species 334 28112 2620507 177 no rank 1 0 712710 177 species 0 Tannerella sp. oral taxon HOT-286 1 642 375288 3 Parabacteroides 1 1 0 genus 823 332 species 0 Parabacteroides distasonis 1 309 2649774 1 0 no rank species 1 Parabacteroides sp. CT06 0 2025876 309 1 0 Prevotellaceae 1 11 family 2671 171552 838 2670 genus 10 0 15 Prevotella 1 species Prevotella enoeca 0 1 76123 176 164 52227 0 Prevotella dentalis 1 species Prevotella ruminicola 0 1 species 237 839 224 2638335 0 1 no rank 224 652716 1 Prevotella sp. oral taxon 299 0 species 0 Prevotella jejuni 1 species 300 1177574 1 0 Prevotella denticola species 92 28129 242 589436 1 0 Prevotella fusca species 28131 608 species 1 Prevotella intermedia 0 612 28132 1 Prevotella melaninogenica 0 species 0 5 family 652 2005520 genus 1 Proteiniphilum 0 9 2 294702 173 164 1642647 Proteiniphilum saccharofermentans 0 1 species 0 1 genus 163 307628 163 1642646 1 Petrimonas mucosa 0 species Fermentimonas 1 0 6 2 genus 316 1784836 species 1 Fermentimonas caenicola 0 1562970 310 family 1 Bacteroidaceae 0 4 11 815 2398 10 0 5 1 Bacteroides genus 2394 816 190 47678 0 Bacteroides caccae 1 species species 1 Bacteroides heparinolyticus 0 28113 212 1 Bacteroides helcogenes 0 species 210 290053 818 326 species 1 0 Bacteroides thetaiotaomicron 136 28119 1 Bacteroides zoogleoformans 0 species 1 Bacteroides cellulosilyticus 0 species 346 246787 287 28116 0 Bacteroides ovatus 1 species 449 817 0 Bacteroides fragilis 1 species 1796613 233 species Bacteroides caecimuris 0 1 297 1853231 2 0 family genus 2 0 1 Odoribacter 1 283168 297 species 1 0 Odoribacter splanchnicus 28118 296 4 0 3 1 Rikenellaceae family 451 171550 238 239759 2 0 2 Alistipes 1 genus species Alistipes finegoldii 0 1 214856 236 1611681 210 genus 0 1 species 1 0 Mucinivorans hirudinis 1433126 210 1970189 2488 order 0 7 1471398 701 family 0 2 701 1471399 2 5 0 Draconibacterium 1 genus 696 1168034 1 0 Draconibacterium orientale species family 2 0 1970190 384 Salinivirga 1 0 1 2 genus 384 1970191 1307839 383 species 1 Salinivirga cyanobacteriivorans 0 family 2 Marinifilaceae 1 1 0 1573805 739 0 1 genus 738 2060722 species 1 Marinifilaceae bacterium SPP2 0 1717717 738 1 0 family 664 558415 664 1193324 0 1 genus species 1 0 Alkalitalea saponilacus 889453 664 1363 1100069 Bacteroidetes Order II. Incertae sedis 1 0 17 5 order 4 1 Rhodothermaceae 4 0 family 1346 563843 0 1 genus 356 146918 356 146919 0 Salinibacter ruber 1 species 322 29548 1 0 genus species 1 Rhodothermus marinus 0 29549 322 no rank 0 1 1196022 664 1 Rhodothermaceae bacterium RA 0 species 664 1779382 class 24 1 Sphingobacteriia 9 0 117747 12345 order 1 Sphingobacteriales 24 0 23 200666 12336 0 55 1 Sphingobacteriaceae 22 family 12312 84566 1 0 no rank 1930 84568 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 species 1930 1986952 833 929509 2 1 Solitalea 7 0 genus species 0 Solitalea canadensis 1 995 826 6 22 0 Sphingobacterium 1 genus 2203 28453 1 0 Sphingobacterium mizutaii species 383 1010 2609468 1798 no rank 0 4 743722 413 species 1 Sphingobacterium sp. 21 0 438 1933220 1 Sphingobacterium sp. B29 0 species 2003121 389 species 1 Sphingobacterium sp. G1-14 0 558 1538644 Sphingobacterium sp. ML3W 0 1 species 423349 2119 genus 21 0 1 Mucilaginibacter 4 673 1234841 Mucilaginibacter sp. BJC16-A31 0 1 species 1 0 no rank 376 2617802 species 1 0 Mucilaginibacter sp. PAMC 26640 1300914 376 1049 1550579 0 Mucilaginibacter gotjawali 1 species genus 6 27 0 1 Pedobacter 84567 4532 430522 486 species 0 Pedobacter steynii 1 Pedobacter cryoconitis 0 1 species 905 188932 686 363852 0 Pedobacter ginsengisoli 1 species 1 Pedobacter heparinus 0 species 443 984 1985 2628915 0 1 no rank 1 0 Pedobacter sp. PACM 27299 species 1985 1727164 0 4 1 Pseudopedobacter 2 genus 640 1649482 151895 636 species Pseudopedobacter saltans 0 1 732 1134404 0 6 phylum 732 795747 6 Ignavibacteria 1 0 10 class 722 795748 5 0 order 0 2 family 154 1334117 genus Melioribacter 1 1 0 2 1134403 154 species 1 Melioribacter roseus 0 1134405 153 795749 568 family 3 Ignavibacteriaceae 1 1 0 567 795750 2 2 0 Ignavibacterium 1 genus 0 Ignavibacterium album 1 species 565 591197 57723 2858 phylum 18 0 class 1 Acidobacteriia 10 0 16 204432 2655 495 332160 4 Solibacterales 1 2 0 order family 8 0 Solibacteraceae 1 3 332161 493 485 332162 2 1 0 Candidatus Solibacter 1 genus 332163 484 species 1 Candidatus Solibacter usitatus 0 2150 204433 11 Acidobacteriales 1 0 9 order 204434 2141 family 10 1 Acidobacteriaceae 0 7 genus 1 0 1 Terriglobus 3 392733 467 1 Terriglobus saanensis 0 species 260 870903 species 1 0 Terriglobus roseus 392734 206 genus 2 Candidatus Koribacter 1 2 0 658061 200 198 658062 0 Candidatus Koribacter versatilis 1 species 33973 766 genus 0 1 766 33075 1 Acidobacterium capsulatum 0 species 3 Granulicella 1 0 4 genus 701 940557 485 940615 1 Granulicella tundricola 0 species 212 940614 0 Granulicella mallensis 1 species 203 1562566 0 2 class genus 1 Chloracidobacterium 0 2 2 458032 203 species 0 Chloracidobacterium thermophilum 1 458033 201 phylum 0 4 68297 574 574 203486 4 1 Dictyoglomia 2 0 class order 3 Dictyoglomales 1 0 2 203487 572 family 0 2 203488 570 genus 0 2 13 570 274 14 1 0 Dictyoglomus thermophilum species Dictyoglomus turgidum 0 1 species 296 513050 490 508458 0 10 phylum class 10 1 0 Synergistia 1 649775 490 order 9 0 5 Synergistales 1 649776 489 family 1 0 Synergistaceae 1 8 649777 484 336260 80 genus 1 0 80 336261 1 Thermovirga lienii 0 species 94 81466 1 0 genus species 0 Aminobacterium colombiense 1 81468 94 genus 2 0 2 1 Thermanaerovibrio 81461 98 Thermanaerovibrio acidaminovorans 0 1 species 96 81462 Acetomicrobium 1 0 1 2 genus 50 49894 97477 49 species 0 Acetomicrobium mobile 1 161 508459 1 0 genus species 1 0 Cloacibacillus porcorum 1197717 161 1783257 18381 clade 82 0 2092 204428 0 21 phylum class 21 10 0 Chlamydiia 1 204429 2092 order 1 Chlamydiales 6 0 14 51291 1470 13 0 2 1 Chlamydiaceae family 1464 809 1462 1113537 12 0 no rank 12 Chlamydia 1 14 0 genus 1462 810 0 Chlamydia psittaci 1 species 161 83554 1457153 97 species 1 Chlamydia gallinacea 0 125 83560 1 Chlamydia muridarum 0 species 121 85991 Chlamydia pecorum 0 1 species species 1 0 Chlamydia caviae 83557 97 75 83559 0 Chlamydia suis 1 species species 1 Chlamydia pneumoniae 0 83558 368 1 Chlamydia felis 0 species 77 83556 83555 104 species 0 Chlamydia abortus 1 0 Chlamydia avium 1 species 135 1457141 813 88 species 1 Chlamydia trachomatis 0 0 6 order 612 1963360 92714 85 family 1 0 71666 85 genus 1 0 85 71667 1 0 Waddlia chondrophila species 92712 180 family 2 0 180 34093 2 1 Simkania 0 1 genus 179 83561 1 0 Simkania negevensis species 0 3 family 347 92713 0 1 genus 185 83551 185 83552 1 Parachlamydia acanthamoebae 0 species 162 282132 0 3 1 Candidatus Protochlamydia 2 genus 159 389348 1 Candidatus Protochlamydia naegleriophila 0 species 0 3 phylum 293 256845 class 0 4 1 Lentisphaeria 3 1313211 293 278082 289 order 2 1 Victivallales 0 2 287 1674876 0 1 no rank 2094242 287 species 0 Victivallales bacterium CCUG 44730 1 phylum 0 3 134625 366 1921781 366 class 0 3 1 Kiritimatiellales 0 3 3 order 366 1921782 2 0 family 363 1921783 363 1921784 2 0 1 1 Kiritimatiella genus 1307763 362 species 1 0 Kiritimatiella glycovorans 35 0 phylum 11743 203682 1 Phycisphaerae 14 0 6 class 1442 666505 order Phycisphaerales 1 0 6 3 666506 1263 666507 1257 family 1 Phycisphaeraceae 0 1 2 0 1 genus 1256 666508 1 Phycisphaera mikurensis 0 species 1256 547188 165 2483366 2 0 order 165 2483367 0 2 family 0 2 genus 165 2483368 Phycisphaerae bacterium L21-RPul-D3 0 1 species 78 1940790 1 Phycisphaerae bacterium ST-PulAB-D4 0 species 87 1941349 26 15 0 1 Planctomycetia class 6215 203683 order 0 6 2691356 2041 1763524 2041 family 0 58 Isosphaeraceae 1 6 127 730 genus 2 101 0 1 Isosphaera 629 128 Isosphaera pallida 0 1 species 1763521 599 genus 0 1 599 1387353 0 Paludisphaera borealis 1 species 98 0 Singulisphaera 1 2 genus 654 466152 species Singulisphaera acidiphila 0 1 466153 556 order 116 0 Planctomycetales 1 11 112 2397 126 2281 family 1 Planctomycetaceae 107 0 10 2 0 58 1 Rubinisphaera genus 469 1649490 411 119 Rubinisphaera brasiliensis 0 1 species 2 0 2 1 Planctopirus genus 184 1649480 Planctopirus limnophila 0 1 species 182 120 1 Fuerstia 0 2 2 genus 397 1936111 1891926 395 species 0 Fuerstia marisgermanicae 1 genus 1 Planctomyces 63 0 3 118 1124 2 0 no rank 1061 2648843 1632864 441 species 1 Planctomyces sp. SH-PL14 0 1 Planctomyces sp. SH-PL62 0 species 620 1636152 order 0 6 2691354 1009 2691358 139 family 0 2 1676125 139 genus 2 0 3 Thermogutta 1 1331910 136 species 0 Thermogutta terrifontis 1 4 0 family 870 2691357 123 474 genus 2 4 0 Pirellula 1 species 1 0 Pirellula staleyi 125 470 58 0 Rhodopirellula 1 2 genus 396 265488 265606 338 species Rhodopirellula baltica 0 1 753 2691355 2 0 order 2 0 family 753 1914233 113 753 genus 155 0 1 Gemmata 2 2622970 598 no rank 1 0 Gemmata sp. SH-PL17 0 1 species 598 1630693 2517206 4086 class 0 3 1127829 4086 order 3 Candidatus Brocadiales 1 4 0 4082 1127830 0 2 family 2 0 1 Candidatus Kuenenia 1 genus 4082 380738 4081 174633 1 Candidatus Kuenenia stuttgartiensis 0 species 74201 3887 phylum 20 0 4 Verrucomicrobia 1 732 417295 2 0 no rank 2026799 461 species 1 Verrucomicrobia bacterium 0 1 Verrucomicrobia bacterium IMCC26134 0 species 271 1637999 37 134549 0 2 class Candidatus Xiphinematobacter 1 3 0 2 genus 37 134550 1 0 no rank 34 2648876 0 Candidatus Xiphinematobacter sp. Idaho Grape 1 species 34 1704307 1955630 245 class 2 0 245 717963 2 0 order 717964 245 family 2 0 genus 2 0 511745 245 141 591154 1 Methylacidiphilum fumariolicum 0 species 104 511746 Methylacidiphilum infernorum 0 1 species 387 203494 0 4 class order 1 Verrucomicrobiales 0 6 4 48461 387 family 3 0 1647988 381 381 239934 Akkermansia 1 0 1 3 genus 212 1679444 0 Akkermansia glycaniphila 1 species 239935 168 species Akkermansia muciniphila 0 1 414999 2482 class 9 1 Opitutae 0 7 415000 2001 order 7 Opitutales 1 6 0 family 0 3 Opitutaceae 1 6 134623 1995 702 278955 1 0 no rank species 0 Opitutaceae bacterium TAV5 1 794903 702 genus 2 Lacunisphaera 1 3 0 1961799 802 799 1838286 1 Lacunisphaera limnophila 0 species 488 178440 1 Opitutus 2 0 2 genus species Opitutus terrae 0 1 107709 486 1 0 order 474 415001 474 415002 1 0 family 0 1 genus 474 442430 species 0 Coraliomargarita akajimensis 1 395922 474 phylum 0 13 40117 1422 class 25 0 1 Nitrospira 13 203693 1422 order 12 22 0 1 Nitrospirales 189778 1397 family 1 Nitrospiraceae 0 3 11 189779 1375 266 179 4 Leptospirillum 1 1 0 genus species group 1 0 261385 72 species 1 0 Leptospirillum sp. Group II 'CF-1' 1660083 72 species group 0 1 655606 104 species 0 Leptospirillum ferrooxidans 1 180 104 0 1 species group 89 261386 species 1 Leptospirillum ferriphilum 0 178606 89 333 28261 0 1 genus 28262 333 species 1 0 Thermodesulfovibrio yellowstonii 773 1234 Nitrospira 1 7 0 5 genus 1 0 Nitrospira japonica species 189 1325564 105 1715989 0 Candidatus Nitrospira inopinata 1 species species 0 Nitrospira moscoviensis 1 42253 322 150 330214 0 Nitrospira defluvii 1 species phylum 54 0 203691 12438 class 54 0 22 Spirochaetia 1 203692 12438 2479 1643688 0 8 order family 8 1 Leptospiraceae 0 3 170 2479 genus 6 0 7 1 Leptospira 171 2307 240 172 1 0 Leptospira biflexa species 1 Leptospira santarosai 0 species 934 28183 species Leptospira alstonii 0 1 28452 143 species Leptospira interrogans 0 1 173 669 314 174 1 Leptospira borgpetersenii 0 species 338321 169 genus 0 1 29510 169 species 0 Turneriella parva 1 1643686 2148 order 0 1 Brachyspirales 1 6 5 0 family 2147 143786 29521 2147 genus 5 4 0 Brachyspira 1 472 84377 0 Brachyspira intermedia 1 species 159 539 species 1 Brachyspira hyodysenteriae 0 species 1 Brachyspira murdochii 0 84378 493 species 1 Brachyspira pilosicoli 0 52584 639 order 41 0 Spirochaetales 1 39 136 7789 family 1 Spirochaetaceae 0 45 21 137 3365 399320 268 genus 4 1 0 Sphaerochaeta 1 species 1 Sphaerochaeta globosa 0 1131703 101 0 Sphaerochaeta pleomorpha 1 species 99 1131707 273376 67 species 1 0 Sphaerochaeta coccoides genus 2 0 146 696 species 1 0 Spirochaeta africana 46355 296 0 Spirochaeta thermophila 1 species 400 154 1 0 genus 151 1911556 55206 151 species Sediminispirochaeta smaragdinae 0 1 genus 12 0 9 1 Treponema 157 1586 158 125 species Treponema denticola 0 1 species 1 0 Treponema paraluiscuniculi 53435 192 Treponema brennaborense 0 1 species 140 81028 177 221027 Treponema putidum 0 1 species 90 150829 1 Treponema azotonutricium 0 species 185 88058 1 0 Treponema primitia species 1 Treponema succinifaciens 0 species 187 167 114 215591 0 Treponema caldarium 1 species species 1 Treponema pallidum 0 160 86 1 0 Treponema pedis species 161 409322 no rank 0 1 2638727 120 120 1539298 1 0 Treponema sp. OMZ 838 species genus 1 0 1616789 619 species 1 0 Salinispira pacifica 1307761 619 4383 1643685 1 Borreliaceae 8 0 17 family genus 8 0 71 Borreliella 1 64895 1739 664662 155 species 0 Borreliella bavariensis 1 species 0 Borreliella valaisiana 1 62088 187 281 139 1 0 Borreliella burgdorferi species species 1 0 Borreliella afzelii 29518 173 337 1674146 Borrelia mayonii 0 1 species species 1 0 Borreliella garinii 29519 326 species 1 Borreliella bissettii 0 64897 209 genus 1 Borrelia 0 43 8 138 2636 species 0 Borrelia duttonii 1 40834 1030 336 44449 Borrelia recurrentis 0 1 species species 0 Borrelia parkeri 1 141 150 143 140 species 0 Borrelia anserina 1 species 1 Borrelia miyamotoi 0 47466 545 species 1 0 Borrelia hermsii 140 167 142 225 species Borrelia turicatae 0 1 phylum 0 19 200783 2529 class 19 1 Aquificae 2 0 187857 2529 15 0 order 2136 32069 224027 1045 family 0 4 212790 883 genus 3 2 0 Sulfurihydrogenibium 1 546 2619248 0 1 no rank 546 436114 0 Sulfurihydrogenibium sp. YO3AOP1 1 species species 1 Sulfurihydrogenibium azorense 0 309806 335 1 0 genus 162 182899 309805 162 species 0 Persephonella marina 1 64898 1021 family 10 0 2713 44 genus 0 1 Aquifex aeolicus 0 1 species 44 63363 168657 813 genus 6 0 26 1 Hydrogenobaculum no rank 5 0 2622382 787 Hydrogenobaculum sp. Y04AAS1 0 1 species 135 380749 547145 163 species 1 Hydrogenobaculum sp. SHO 0 163 547146 Hydrogenobaculum sp. SN 0 1 species species Hydrogenobaculum sp. HO 0 1 547144 163 163 547143 1 0 Hydrogenobaculum sp. 3684 species 1 0 genus 64 939 64 940 0 Hydrogenobacter thermophilus 1 species 75905 100 genus 0 2 species Thermocrinis ruber 0 1 75906 55 1 Thermocrinis albus 0 species 45 136094 0 1 no rank 70 90150 70 412592 0 1 genus 70 412593 Thermosulfidibacter takaii 0 1 species order 2 0 Desulfurobacteriales 1 3 1485951 391 389 558314 2 0 family 64159 310 genus 0 1 species 0 Desulfurobacterium thermolithotrophum 1 64160 310 0 1 genus 79 171868 228745 79 species Thermovibrio ammonificans 0 1 200940 717 phylum 7 0 class 7 0 67799 717 188710 717 order 7 1 Thermodesulfobacteriales 9 0 family 0 3 1 Thermodesulfobacteriaceae 6 188711 708 241192 126 genus 0 1 126 171695 1 Thermodesulfatator indicus 0 species 444090 135 genus 1 0 1 Caldimicrobium thiodismutans 0 species 135 1653476 1740 444 genus 3 Thermodesulfobacterium 1 0 2 1 Thermodesulfobacterium commune 0 species 151 1741 291 1295609 1 0 Thermodesulfobacterium geofontis species phylum 0 3 200938 219 219 118001 0 3 class 219 189769 3 1 Chrysiogenales 3 0 order 189770 216 family 0 2 216 393029 2 0 1 Desulfurispirillum 1 genus 215 936456 1 0 Desulfurispirillum indicum species 200918 5513 phylum 41 0 5513 188708 1 Thermotogae 6 0 41 class 7 0 2 1 Petrotogales order 1408 1643947 family 6 0 1643949 1406 3 1 Marinitoga 7 0 genus 909 160798 447 2640159 0 1 no rank 1 Marinitoga sp. 1137 0 species 447 1545835 0 Marinitoga piezophila 1 species 455 149715 239 28236 1 0 genus species Petrotoga mobilis 0 1 69499 239 2 0 2 1 Defluviitoga genus 258 1511648 1 Defluviitoga tunisiensis 0 species 256 1006576 2707 2419 27 7 0 Thermotogales 1 order 1643950 1762 family 1 0 Fervidobacteriaceae 1 9 1176 2420 4 0 genus 2676525 583 no rank 2 0 351 1437364 1 0 Thermosipho sp. 1070 species 1 Thermosipho sp. 1063 0 species 232 1462747 Thermosipho melanesiensis 0 1 species 247 46541 2421 346 species 1 Thermosipho africanus 0 585 2422 0 1 1 Fervidobacterium 4 genus 2424 252 species 0 Fervidobacterium nodosum 1 species 1 Fervidobacterium islandicum 0 2423 124 93466 208 species Fervidobacterium pennivorans 0 1 family 0 1 1 Thermotogaceae 17 188709 938 genus 11 1 Thermotoga 7 0 2335 538 2631113 151 no rank 4 0 1 Thermotoga sp. Cell2 0 species 38 1157947 126740 43 species Thermotoga sp. RQ2 0 1 species 1 0 Thermotoga sp. RQ7 126738 25 1157948 45 species 1 0 Thermotoga sp. 2812B 1508419 45 species Thermotoga caldifontis 0 1 species Thermotoga naphthophila 0 1 93930 71 0 Thermotoga petrophila 1 species 33 93929 1 0 Thermotoga profunda species 131 1508420 2337 31 species 1 0 Thermotoga neapolitana 69 2336 0 Thermotoga maritima 1 species 1643951 399 genus 0 8 Pseudothermotoga 1 5 species 0 Pseudothermotoga elfii 1 38322 115 species 1 0 Pseudothermotoga hypogea 57487 60 95 119394 Pseudothermotoga thermarum 0 1 species species 1 0 Pseudothermotoga lettingae 177758 121 order 6 1 Kosmotogales 0 1 1643946 1392 family 0 5 1643948 1391 651456 1303 genus 1 0 Kosmotoga 1 3 species Kosmotoga olearia 0 1 651457 154 1148 1330330 Kosmotoga pacifica 0 1 species genus 2 Mesotoga 1 1 0 1184396 88 species 0 Mesotoga prima 1 1184387 87 0 3 no rank 256 2323 256 1783234 0 3 clade 2 0 clade 217 95901 2497643 217 class 0 2 2 0 order 217 2497644 2 0 family 217 2497645 2 1 Candidatus Babela 0 4 genus 217 1551504 673862 213 species 1 Candidatus Babela massiliensis 0 0 1 phylum 39 95818 39 1895827 1 0 no rank 1 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 species 39 2056494 1601459 1224 1 Proteobacteria 0 336 1969 phylum 876 Gammaproteobacteria 1 0 1135 class 772364 1236 order 0 3 135615 251 3 0 1 1 Cardiobacteriaceae family 251 868 250 869 2 0 2 Dichelobacter 1 genus species 1 Dichelobacter nodosus 0 870 248 order 5 0 1240482 1080 5 1 Orbaceae 8 0 family 1080 1240483 447 1335631 Frischella 1 2 0 2 genus 1267021 445 species 1 0 Frischella perrara 625 1193503 Gilliamella 1 2 0 2 genus 1196095 623 species Gilliamella apicola 0 1 286831 91347 Enterobacterales 1 422 0 243 order 1903410 8271 family 20 Pectobacteriaceae 1 17 0 2027 204037 Dickeya 1 14 0 6 genus 478 1089444 Dickeya solani 0 1 species 1778540 270 species 1 Dickeya fangzhongdai 0 290 204039 1 0 Dickeya dianthicola species species 1 Dickeya zeae 0 204042 796 species Dickeya dadantii 0 1 204038 179 71655 481 genus 2 9 0 1 Brenneria 1 0 Brenneria goodwinii species 472 1109412 122277 2625 genus 6 29 0 Pectobacterium 1 1905730 696 species 0 Pectobacterium parmentieri 1 593 55208 1 Pectobacterium wasabiae 0 species 242 2042057 1 Pectobacterium polaris 0 species species 1 Pectobacterium atrosepticum 0 29471 271 794 554 0 Pectobacterium carotovorum 1 species 3121 84565 5 Sodalis 1 19 0 genus Sodalis endosymbiont of Henestaris halophilus 0 1 species 835 1929246 species Sodalis glossinidius 0 1 63612 295 species 1 Sodalis praecaptivus 0 1239307 997 0 Candidatus Sodalis pierantonius 1 species 975 1486991 1903416 272 family 0 2 Pragia 1 0 1 2 genus 272 82984 1 Pragia fontium 0 species 271 82985 28 Erwiniaceae 1 26 0 family 12375 1903409 8 1 Erwinia 0 12 genus 2195 551 species 0 Erwinia pyrifoliae 1 79967 267 species 1 0 Erwinia amylovora 552 206 1619313 340 species 1 Erwinia gerundensis 0 1 Erwinia billingiae 0 species 551 182337 species 1 Erwinia tasmaniensis 0 338565 218 1922217 228 species Candidatus Erwinia sp. ErCipseudotaxifoliae 0 1 no rank 1 0 2622719 373 215689 373 species 0 Erwinia sp. Ejp617 1 0 2 genus 990 2100764 665913 652 species Pantoea calida 0 1 665914 338 species 1 0 Pantoea gaviniae 291 82986 2 Tatumella 1 2 0 genus 53336 289 species Tatumella citrea 0 1 genus Wigglesworthia 1 13 0 2 51228 593 51229 580 species 1 0 Wigglesworthia glossinidia 2 1 Buchnera 0 15 genus 3508 32199 9 3493 species Buchnera aphidicola 0 1 0 164 1 Pantoea 11 genus 4772 53335 273 66269 1 0 Pantoea stewartii species 0 Pantoea vagans 1 species 1059 470934 1218 2630326 0 3 no rank 1484157 433 species Pantoea sp. PSNIH2 0 1 328 1484158 1 0 Pantoea sp. PSNIH1 species Pantoea sp. At-9b 0 1 species 457 592316 610 553 1 0 Pantoea ananatis species 612 1654067 0 1 species group species 0 Pantoea agglomerans 1 549 612 species Pantoea rwandensis 0 1 1076550 255 275 1891675 0 Pantoea alhagi 1 species 1235990 306 species 1 Candidatus Pantoea carbekii 0 Yersiniaceae 1 29 0 39 family 31371 1903411 16878 613 16 1 Serratia 206 0 genus 1 Serratia plymuthica 0 species 1117 82996 Serratia proteamaculans 0 1 species 231 28151 398 61652 1 0 Serratia rubidaea species 1 Serratia liquefaciens 0 species 533 614 Serratia ficaria 0 1 species 356 61651 47917 7328 species 1 0 Serratia fonticola 3827 615 Serratia marcescens 0 1 species no rank 0 8 2647522 2882 2033438 288 species Serratia sp. MYb239 0 1 1327989 528 species Serratia sp. FS14 0 1 1 0 Serratia sp. ATCC 39006 species 223 104623 Serratia sp. SSNIH1 0 1 species 314 1758196 species Serratia sp. FGI94 0 1 671990 261 778 488142 1 0 Serratia sp. SCBI species 245 768490 1 0 Serratia sp. AS12 species 1 Serratia sp. AS13 0 species 245 768493 1745211 293 genus Chania 1 6 0 2 species 1 0 Chania multitudinisentens 1639108 287 929812 290 genus 3 0 Gibbsiella 1 2 287 929813 1 Gibbsiella quercinecans 0 species 1565532 4 genus 1 0 Rouxiella Yersinia 1 0 134 13 genus 12975 629 29486 537 species 1 Yersinia ruckeri 0 species 1 0 Yersinia kristensenii 28152 436 0 Yersinia aleksiciae 1 species 322 263819 6120 1649845 3 0 species group 2607 367190 1 Yersinia similis 0 species 633 1988 species 0 Yersinia pseudotuberculosis 1 632 1525 species 1 0 Yersinia pestis 1 0 no rank 374 2653513 1 Yersinia sp. FDAARGOS_228 0 species 374 1839800 1 0 Yersinia aldovae species 435 29483 29485 305 species 0 Yersinia rohdei 1 1809 29484 0 Yersinia frederiksenii 1 species species Yersinia intermedia 0 1 631 447 0 Yersinia enterocolitica 1 species 2056 630 34037 902 genus 4 0 15 Rahnella 1 34038 287 species Rahnella aquatilis 0 1 no rank 0 2 2635087 600 species 0 Rouxiella sp. ERMR1:05 1 1805933 335 species 0 Rahnella sp. Y9602 1 741091 265 1903414 8813 family Morganellaceae 1 21 0 21 0 1 genus 379 637 379 634113 1 0 Arsenophonus symbiont of Lipoptena fortisetosa species 583 2664 genus 3 0 4 Proteus 1 613 585 1 0 Proteus vulgaris species species 1 Proteus mirabilis 0 584 2047 genus Xenorhabdus 1 0 15 6 626 1713 1 0 Xenorhabdus nematophila species 271 628 351679 262 species 1 0 Xenorhabdus hominickii 40577 332 species 0 Xenorhabdus poinarii 1 1 0 Xenorhabdus bovienii species 595 40576 351671 238 species 1 0 Xenorhabdus doucetiae genus 0 10 1 Photorhabdus 4 29487 2029 284 574560 1 0 Photorhabdus temperata species 1053 29488 1 Photorhabdus luminescens 0 species species 1 0 Photorhabdus asymbiotica 291112 682 581 389 genus 2 Morganella 1 7 0 582 382 species 1 Morganella morganii 0 1618 586 1 Providencia 2 0 4 genus species Providencia alcalifaciens 0 1 126385 358 species 0 Providencia rettgeri 1 587 561 species 0 Providencia stuartii 1 588 697 737 451511 2 0 no rank genus 1 Plesiomonas 4 0 2 702 737 703 733 species 0 Plesiomonas shigelloides 1 135510 1903412 13 0 28 Hafniaceae 1 family genus 1 0 82982 290 1 Obesumbacterium proteus 0 species 290 82983 8 0 70 1 Edwardsiella genus 134251 635 species Edwardsiella hoshinae 0 1 93378 214 435 1263550 1 Edwardsiella piscicida 0 species 2676541 1534 no rank 0 2 821 1650654 0 Edwardsiella sp. LADL05-105 1 species 1578828 713 species 0 Edwardsiella sp. EA181011 1 1821960 659 species 1 Edwardsiella anguillarum 0 636 130836 species 0 Edwardsiella tarda 1 503 67780 1 0 Edwardsiella ictaluri species 941 568 0 24 Hafnia 1 3 genus 2621980 261 no rank 1 0 1848580 261 species Hafnia sp. CBA7124 0 1 656 569 1 0 Hafnia alvei species 89060 543 423 0 Enterobacteriaceae 1 117 family 1335483 181 genus 1 0 181 563 0 Shimwellia blattae 1 species 5754 544 14 0 138 Citrobacter 1 genus 535 35703 1 Citrobacter amalonaticus 0 species 67824 1757 species 1 Citrobacter farmeri 0 0 2 no rank 327 2644389 115 1702170 Citrobacter sp. FDAARGOS_156 0 1 species 1 0 Citrobacter sp. CFNIH10 species 212 1920110 species Citrobacter rodentium 0 1 67825 192 2587 1344959 0 7 species group 154 2066049 1 Citrobacter freundii complex sp. CFNIH2 0 species 67827 346 species 0 Citrobacter werkmanii 1 2077148 132 species 0 Citrobacter freundii complex sp. CFNIH4 1 1 Citrobacter freundii complex sp. CFNIH9 0 species 217 2077149 Citrobacter freundii complex sp. CFNIH3 0 1 species 197 2077147 species Citrobacter freundii 0 1 546 1181 360 57706 1 Citrobacter braakii 0 species 545 218 species 1 Citrobacter koseri 0 genus 5 1 Kosakonia 0 19 1330547 1071 337 283686 1 0 Kosakonia radicincitans species 497725 291 species Kosakonia oryzae 0 1 species 1 Kosakonia sacchari 0 1158459 217 Kosakonia cowanii 0 1 species 207 208223 942 83654 Leclercia 1 0 8 4 genus 83655 493 species 0 Leclercia adecarboxylata 1 441 2627398 2 0 no rank 230 1920116 Leclercia sp. LSNIH3 0 1 species species 1 0 Leclercia sp. LSNIH1 1920114 211 97 1048757 1 0 genus 97 1048758 Candidatus Moranella endobia 0 1 species 0 9 1 Salmonella 3 genus 19609 590 species 0 Salmonella enterica 1 28901 18439 species 1 Salmonella bongori 0 54736 1161 genus 8 21 0 1 Cronobacter 413496 2004 species 0 Cronobacter muytjensii 1 413501 235 species 0 Cronobacter turicensis 1 413502 173 0 Cronobacter malonaticus 1 species 184 413503 0 Cronobacter sakazakii 1 species 402 28141 550 1163710 Cronobacter condimenti 0 1 species species 1 Cronobacter dublinensis 0 413497 252 0 Cronobacter universalis 1 species 187 535744 252 579 1 0 genus species 1 Kluyvera intermedia 0 61648 252 1330546 937 genus 0 4 Pluralibacter 1 3 species 0 Pluralibacter gergoviae 1 61647 598 335 1334193 0 [Enterobacter] lignolyticus 1 species 0 10 Escherichia 1 5 genus 12481 561 species 1 0 Escherichia albertii 208962 561 1499973 519 species 1 0 Escherichia marmotae 564 157 species Escherichia fergusonii 0 1 1 0 Escherichia coli species 11234 562 191675 3575 no rank 18 0 84563 3575 clade 0 18 1682492 385 genus 0 1 1410383 385 species 0 Candidatus Tachikawaea gelatinosa 1 988 146507 3 0 clade 0 secondary endosymbiont of Ctenarytaina eucalypti 1 species 186 1199245 1 0 genus 568 568987 568 138072 1 0 Candidatus Hamiltonella defensa species 134287 234 species 0 secondary endosymbiont of Heteropsylla cubana 1 199891 169 clade 1 0 169 1835721 1 0 secondary endosymbiont of Trabutina mannipara species 105 1906659 0 1 genus species Candidatus Hoaglandella endobia 0 1 1778263 105 genus 1 0 1 Candidatus Doolittlea 2 1906657 71 1 Candidatus Doolittlea endobia 0 species 70 1778262 clade 0 7 84564 1385 203804 1385 genus 0 4 1 Candidatus Blochmannia 7 101534 199 species Candidatus Blochmannia pennsylvanicus 0 1 0 2 no rank 503 711328 species 1 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1505596 172 331 1505597 1 0 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus species 203907 243 species 0 Candidatus Blochmannia floridanus 1 206 251542 1 Candidatus Blochmannia chromaiodes 0 species 251535 230 species Candidatus Blochmannia vafer 0 1 genus 1 Candidatus Mikella 1 0 2 1906660 210 209 1778264 0 Candidatus Mikella endobia 1 species 0 1 genus 262 1906661 species 0 Candidatus Gullanella endobia 1 1070130 262 14739 570 Klebsiella 1 189 0 10 genus 740 1463165 1 0 Klebsiella quasipneumoniae species 1 0 Klebsiella michiganensis species 1316 1134687 Klebsiella quasivariicola 0 1 species 282 2026240 875 244366 0 Klebsiella variicola 1 species no rank 0 2 2608929 500 1934254 240 species 1 Klebsiella sp. M5al 0 260 1905288 1 Klebsiella sp. LTGPAF-6F 0 species 573 5076 species 1 0 Klebsiella pneumoniae 548 4409 species 0 Klebsiella aerogenes 1 1 0 Klebsiella oxytoca species 1352 571 401618 241 genus 2 1 0 1 Candidatus Riesia 240 401619 0 Candidatus Riesia pediculicola 1 species 158483 1026 genus 2 0 1 1 Cedecea 1025 158822 Cedecea neteri 0 1 species 1 Raoultella 3 0 3 genus 1477 160674 329 575 1 Raoultella planticola 0 species 54291 1145 species Raoultella ornithinolytica 0 1 350 620 4 0 10 Shigella 1 genus 622 208 species 0 Shigella dysenteriae 1 2629414 62 no rank 0 1 species Shigella sp. PAMC 28760 0 1 1813821 62 623 70 species 1 Shigella flexneri 0 1685 1330545 4 1 Lelliottia 0 13 genus 0 Lelliottia amnigena 1 species 1141 61646 1907578 318 species 1 0 Lelliottia jeotgali 1 Lelliottia nimipressuralis 0 species 213 69220 357 0 Enterobacter 1 22 genus 19663 547 9 0 no rank 1407 2608935 1166130 178 species 0 Enterobacter sp. R4-368 1 species 1 Enterobacter sp. Crenshaw 0 1977566 122 0 Enterobacter sp. SA187 1 species 165 1914861 species 1 0 Enterobacter sp. HK169 1868135 121 species 1 0 Enterobacter sp. ODB01 1827481 160 152 2051905 0 Enterobacter sp. CRENT-193 1 species species 1 Enterobacter sp. FY-07 0 1692238 188 126 1560339 0 Enterobacter sp. E20 1 species 1 0 Enterobacter sp. 638 species 195 399742 0 12 species group 17899 354276 Enterobacter cloacae complex 'Hoffmann cluster IV' 0 1 species 141 1812935 species 0 Enterobacter cancerogenus 1 69218 172 species 1 Enterobacter kobei 0 208224 184 359 2757714 0 3 no rank 1915310 120 species 1 Enterobacter cloacae complex sp. ECNIH7 0 1 Enterobacter cloacae complex bacterium 0 species 111 2027919 2077137 128 species 1 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 512 61645 Enterobacter asburiae 0 1 species species 3 1 Enterobacter hormaechei 0 7275 158836 7648 Enterobacter cloacae complex 'Hoffmann cluster III' 0 1 subspecies 248 1812934 Enterobacter xiangfangensis 0 1 subspecies 125 1296536 8782 550 1 Enterobacter cloacae 0 species species 0 Enterobacter ludwigii 1 299767 101 0 5 no rank 2312 36866 1 Enterobacteriaceae bacterium strain FGI 57 0 species 197 693444 Plautia stali symbiont 0 1 species 1589 891974 0 Enterobacteriaceae bacterium ENNIH2 1 species 183 1920109 1 Enterobacteriaceae bacterium ENNIH3 0 species 185 1920128 2066051 158 species 1 Enterobacteriaceae bacterium ENNIH1 0 409304 241 genus 1 0 Candidatus Ishikawaella capsulata 0 1 species 241 168169 no rank 2 0 33811 885 413 83406 gamma proteobacterium HdN1 0 1 species 1248727 472 species endosymbiont of unidentified scaly snail isolate Monju 0 1 118969 8352 order 21 1 Legionellales 5 0 0 18 1 Legionellaceae 15 family 7368 444 2 1 Tatlockia 2 0 genus 363 465 451 361 species Tatlockia micdadei 0 1 6987 445 12 1 Legionella 49 0 genus 1 Legionella longbeachae 0 species 517 450 Legionella clemsonensis 0 1 species 401 1867846 species 1 0 Legionella lansingensis 45067 334 1 Legionella spiritensis 0 species 224 452 449 461 species Legionella hackeliae 0 1 Legionella waltersii 0 1 species 439 66969 Legionella sainthelensi 0 1 species 490 28087 2428 446 1 0 Legionella pneumophila species species 1 Legionella endosymbiont of Polyplax serrata 0 2005262 287 631 96230 0 Legionella fallonii 1 species 0 Legionella oakridgensis 1 species 726 29423 118968 979 family 5 Coxiellaceae 1 21 0 0 5 Coxiella 1 3 genus 728 776 species Coxiella burnetii 0 1 777 515 2676648 208 no rank 0 1 0 Coxiella endosymbiont of Amblyomma americanum 1 species 208 325775 no rank 1 0 134284 230 species 0 Coxiella-like endosymbiont 1 1592897 230 135624 15927 order 27 Aeromonadales 1 0 48 15879 84642 Aeromonadaceae 1 0 67 26 family genus 1 0 129577 587 2636315 587 no rank 0 1 587 511062 0 Oceanimonas sp. GK1 1 species 225143 1219 genus 2 0 858 1416627 1 0 Oceanisphaera profunda species 1903694 361 species Oceanisphaera sp. AMac2203 0 1 13079 642 0 321 1 Aeromonas 18 genus 652 256 species 0 Aeromonas schubertii 1 948519 231 species 1 0 Aeromonas rivipollensis 5686 257493 0 8 no rank species 1 Aeromonas sp. CU5 0 2033033 383 1 Aeromonas sp. ASNIH4 0 species 490 1636609 2033032 400 species 1 0 Aeromonas sp. CA23 1 Aeromonas sp. ASNIH1 0 species 3006 1636606 Aeromonas sp. ASNIH7 0 1 species 209 1920107 259 1636607 0 Aeromonas sp. ASNIH2 1 species species Aeromonas sp. ASNIH3 0 1 1636608 204 Aeromonas sp. ASNIH5 0 1 species 735 1758179 2858 644 Aeromonas hydrophila 0 1 species 1023 654 1 Aeromonas veronii 0 species 250 651 0 Aeromonas media 1 species species 0 Aeromonas dhakensis 1 196024 227 1685 645 1 Aeromonas salmonicida 0 species 0 Aeromonas caviae 1 species 171 648 0 Aeromonas aquatica 1 species 371 558964 347533 682 genus 2 5 0 Zobellella 1 0 Zobellella denitrificans 1 species 677 347534 genus Tolumonas 1 0 8 2 43947 245 0 Tolumonas auensis 1 species 237 43948 order 30 Pasteurellales 1 5 0 135625 10770 712 10765 family 0 61 Pasteurellaceae 1 29 2 4 0 Histophilus 1 genus 501 214906 731 497 species 1 Histophilus somni 0 75984 835 genus 4 Mannheimia 1 7 0 1 0 no rank 203 2645054 species 1 0 Mannheimia sp. USDA-ARS-USMARC-1261 1432056 203 281 75985 1 Mannheimia haemolytica 0 species species Mannheimia varigena 0 1 85404 344 0 5 Aggregatibacter 1 3 genus 701 416916 species 0 Aggregatibacter aphrophilus 1 732 401 714 295 species 1 0 Aggregatibacter actinomycetemcomitans 293 155493 2 1 0 Gallibacterium 1 genus 1 Gallibacterium anatis 0 species 292 750 482 2094023 1 0 genus species 1 0 Glaesserella parasuis 738 482 476528 328 genus 1 0 47735 328 species 0 Bibersteinia trehalosi 1 924 713 5 Actinobacillus 1 0 5 genus 0 Actinobacillus suis 1 species 172 716 268 718 Actinobacillus equuli 0 1 species 349 715 0 Actinobacillus pleuropneumoniae 1 species 130 67854 1 Actinobacillus succinogenes 0 species genus 1 0 697331 185 185 157673 [Mannheimia] succiniciproducens 0 1 species genus 3 30 0 Pasteurella 1 745 1918 Pasteurella dagmatis 0 1 species 393 754 747 1495 species 0 Pasteurella multocida 1 724 4537 genus 6 28 0 1 Haemophilus species 1 Haemophilus influenzae 0 727 2752 species [Haemophilus] ducreyi 0 1 730 1090 218 2609962 1 0 no rank 1 0 Haemophilus sp. oral taxon 036 species 218 712310 729 232 species 0 Haemophilus parainfluenzae 1 217 249188 Haemophilus pittmaniae 0 1 species Chromatiales 1 0 83 48 order 16743 135613 72276 4078 family 15 0 23 1 Ectothiorhodospiraceae 311 1335745 2 0 genus 1335757 199 species Spiribacter curvatus 0 1 species 0 Spiribacter salinus 1 1335746 112 genus 6 14 0 1 Thioalkalivibrio 106633 1996 106634 181 species 1 0 Thioalkalivibrio versutus species 0 Thioalkalivibrio sulfidiphilus 1 1033854 845 species 0 Thioalkalivibrio nitratireducens 1 186931 423 no rank 0 1 2621013 188 species 1 0 Thioalkalivibrio sp. K90mix 396595 188 345 108010 0 Thioalkalivibrio paradoxus 1 species 133193 281 genus 1 0 281 351052 1 0 Alkalilimnicola ehrlichii species 256 85108 0 1 genus Halorhodospira halophila 0 1 species 256 1053 924 1765964 Acidihalobacter 1 3 0 2 genus 160660 921 species 1 Acidihalobacter prosperus 0 287 1051 1 Ectothiorhodospira 0 1 2 genus 2684909 286 no rank 0 1 1442136 286 species 1 0 Ectothiorhodospira sp. BSL-9 449719 1110 family 2 0 Granulosicoccaceae 1 3 437504 1108 genus 2 Granulosicoccus 1 0 29 species 1 Granulosicoccus antarcticus 0 437505 1079 451214 438 no rank 0 2 438 1273155 2 0 8 1 Thiohalobacter genus Thiohalobacter thiocyanaticus 0 1 species 430 585455 255526 398 family Halothiobacillaceae 1 2 0 4 109262 396 genus 3 0 6 Halothiobacillus 1 2636392 214 no rank 0 1 214 1860122 Halothiobacillus sp. LS2 0 1 species 176 927 1 Halothiobacillus neapolitanus 0 species 9017 1046 17 Chromatiaceae 1 0 17 family 750 13724 2 Thiocystis 1 2 0 genus 748 73141 0 Thiocystis violascens 1 species 19 0 Thiodictyon 1 2 genus 4401 53392 1 Candidatus Thiodictyon syntrophicum 0 species 4382 1166950 610 85076 2 1 Marichromatium 0 1 genus 609 37487 0 Marichromatium purpuratum 1 species 156885 652 genus 2 0 11 1 Thioflavicoccus 0 Thioflavicoccus mobilis 1 species 641 80679 342 1980513 2 1 0 1 Candidatus Nitrosoglobus genus species 1 Candidatus Nitrosoglobus terrae 0 1630141 341 genus 1 0 85072 342 342 1049 1 Allochromatium vinosum 0 species 1 Nitrosococcus 0 24 4 genus 1565 1227 Nitrosococcus watsonii 0 1 species 1099 473531 218 1229 1 0 Nitrosococcus oceani species Nitrosococcus halophilus 0 1 species 224 133539 338 82569 1 0 no rank species 1 0 Chromatiaceae bacterium 2141T.STBD.0c.01a 1978339 338 family 3 Wenzhouxiangellaceae 1 6 0 1676141 1330 2 0 12 Wenzhouxiangella 1 genus 1324 1676142 0 Wenzhouxiangella marina 1 species 1312 1579979 family 3 5 0 Woeseiaceae 1 1738654 289 1738655 284 genus 0 9 1 Woeseia 2 species Woeseia oceani 0 1 1548547 275 order Acidiferrobacterales 1 0 6 6 1692040 725 719 1692041 5 3 0 1 Acidiferrobacteraceae family genus 2 0 4 Sulfurifustis 1 1692042 482 478 1675686 Sulfurifustis variabilis 0 1 species 1744881 234 genus 0 1 1 Sulfuricaulis 2 233 1620215 1 0 Sulfuricaulis limicola species order 4 9 0 1 Immundisolibacterales 1934945 509 family 1 Immundisolibacteraceae 0 4 3 1934946 500 2 0 4 Immundisolibacter 1 genus 496 1934947 1810504 492 species 1 0 Immundisolibacter cernigliae 27 Cellvibrionales 1 12 0 order 10407 1706369 family 22 0 1 Cellvibrionaceae 10 1706371 5142 genus 1 0 447467 552 Simiduia agarivorans 0 1 species 552 447471 0 1 genus 875 2036021 1737490 875 species 1 Agarilytica rhodophyticola 0 10 1809 genus 4 11 0 1 Cellvibrio 1 0 Cellvibrio japonicus species 507 155077 no rank 2 0 2624793 1291 0 Cellvibrio sp. PSBB023 1 species 745 1945512 546 1987723 Cellvibrio sp. PSBB006 0 1 species 0 1 genus 528 2425 1 Teredinibacter turnerae 0 species 528 2426 1356 316625 2 0 7 1 Saccharophagus genus 86304 1349 species 1 Saccharophagus degradans 0 7 0 33 1 Spongiibacteraceae family 2661 1706375 1 Oceanicoccus 2 0 2 genus 1225 1084558 1223 716816 Oceanicoccus sagamiensis 0 1 species 630749 700 genus 2 8 0 1 Spongiibacter no rank 0 1 2631504 692 1620392 692 species Spongiibacter sp. IMCC21906 0 1 genus 2 1 Zhongshania 0 5 1434050 703 698 1470434 Zhongshania aliphaticivorans 0 1 species family Halieaceae 1 15 0 4 1706372 1301 genus 3 0 23 Halioglobus 1 1217416 1286 930805 597 species Halioglobus japonicus 0 1 Halioglobus pacificus 0 1 species 666 930806 1291 1706373 5 0 2 Microbulbiferaceae 1 family genus 4 1 Microbulbifer 0 54 48073 1289 320 1769779 1 0 Microbulbifer aggregans species 481 260552 0 Microbulbifer agarilyticus 1 species 252514 434 species Microbulbifer thermotolerans 0 1 135618 4545 order 42 0 1 Methylococcales 11 family 17 0 Methylococcaceae 1 10 403 4503 207 413 2 0 1 1 Methylococcus genus 1 Methylococcus capsulatus 0 species 206 414 genus 1 0 39773 1139 species 1 Methylomicrobium alcaliphilum 0 271065 1139 1 0 genus 284 762296 284 1704499 1 0 Methylovulum psychrotolerans species 126 0 Methylomonas 1 5 genus 2856 416 0 Methylomonas koyamae 1 species 248 702114 2608980 377 no rank 1 0 1 Methylomonas sp. DH-1 0 species 377 1727196 1871 1538553 1 0 Methylomonas denitrificans species 0 Methylomonas methanica 1 species 234 421 72273 15665 order 34 Thiotrichales 1 3 0 4637 135616 14 15 0 1 Piscirickettsiaceae family 3 0 11 1 Methylophaga genus 741 40222 1 Methylophaga nitratireducenticrescens 0 species 350 754476 1 Methylophaga frappieri 0 species 380 754477 398 28884 1 0 genus 39765 398 species Hydrogenovibrio crunogenus 0 1 Cycloclasticus 1 20 0 4 genus 1536 34067 2621467 945 no rank 0 2 385025 439 species 0 Cycloclasticus sp. P1 1 0 Cycloclasticus sp. PY97N 1 species 506 728003 species Cycloclasticus zancles 0 1 1329899 571 0 2 Thiomicrospira 1 3 genus 533 933 species 1 0 Thiomicrospira aerophila 92245 277 254 147268 Thiomicrospira cyclica 0 1 species genus 2 Piscirickettsia 1 0 1 1237 1414 species 0 Piscirickettsia salmonis 1 1238 1413 5 Thiotrichaceae 1 5 0 family 1053 135617 genus 2 1 Thioploca 0 1 40751 410 0 Thioploca ingrica 1 species 409 40754 5 0 Beggiatoa 1 2 genus 638 1021 633 288004 1 Beggiatoa leptomitoformis 0 species 14 0 12 1 Francisellaceae family 9972 34064 Francisella 1 0 119 12 genus 9494 262 Francisella sp. TX077310 0 1 species 452 573570 1657 263 0 Francisella tularensis 1 species 600 1542390 1 Francisella sp. CA97-1460 0 species 2661 549298 1 Francisella halioticida 0 species no rank 0 2 2610885 994 475375 492 species 1 Francisella sp. MA067296 0 Francisella sp. FSC1006 0 1 species 502 1547445 696 657445 1 0 Francisella noatunensis species 28110 1129 species 1 Francisella philomiragia 0 954 338 species 1 0 Francisella persica species 1 0 Francisella sp. TX077308 573569 406 622488 442 species 0 Francisella hispaniensis 1 1 0 genus 466 1869285 594679 466 species 1 Allofrancisella guangzhouensis 0 72274 111653 order Pseudomonadales 1 330 0 129 86 0 450 Pseudomonadaceae 1 family 85973 135621 subfamily 0 3 351 1740 352 1740 genus 1 Azotobacter 20 0 3 species 0 Azotobacter vinelandii 1 354 495 353 1225 species 1 Azotobacter chroococcum 0 923 1849530 1 Oblitimonas 4 0 2 genus 1 Oblitimonas alkaliphila 0 species 919 1697053 genus 80 1 Pseudomonas 1103 0 286 82860 12227 136843 9 0 species group species 1 Pseudomonas veronii 0 76761 326 species 1 0 Pseudomonas corrugata 47879 292 species 1 Pseudomonas azotoformans 0 47878 894 693 380021 0 Pseudomonas protegens 1 species 200451 304 species 0 Pseudomonas poae 1 1 Pseudomonas orientalis 0 species 251 76758 species Pseudomonas trivialis 0 1 200450 981 8208 294 1 0 Pseudomonas fluorescens species 75612 278 species Pseudomonas mandelii 0 1 136846 11460 species group 0 2 species 1 Pseudomonas balearica 0 74829 318 species subgroup 1 0 578833 11142 1 0 Pseudomonas stutzeri species 11142 316 216142 286 species Pseudomonas rhizosphaerae 0 1 65741 503 species 0 Pseudomonas knackmussii 1 8 0 species group 6530 136849 215 46257 Pseudomonas avellanae 0 1 species 533 2775504 1 0 no rank 533 1206777 1 Pseudomonas sp. Lz4W 0 species 182 36746 1 Pseudomonas cichorii 0 species Pseudomonas syringae group genomosp. 3 0 1 species 1359 251701 species subgroup 0 2 251698 1060 species 1 0 Pseudomonas amygdali 47877 357 29438 703 species 1 Pseudomonas savastanoi 0 Pseudomonas viridiflava 0 1 species 190 33069 species subgroup 0 1 251695 2991 species Pseudomonas syringae 0 1 317 2991 1 Pseudomonas versuta 0 species 322 1788301 1 0 Pseudomonas cerasi species 1399 1583341 1 0 Pseudomonas entomophila species 354 312306 930166 696 species 0 Pseudomonas brassicacearum 1 0 Pseudomonas cremoricolorata 1 species 245 157783 237609 263 species Pseudomonas alkylphenolica 0 1 136841 12013 species group 6 0 287 6366 species Pseudomonas aeruginosa 0 1 species Pseudomonas mendocina 0 1 300 1750 1068 53408 1 0 Pseudomonas citronellolis species species 1 Pseudomonas alcaligenes 0 43263 407 1 0 Pseudomonas resinovorans species 478 53412 1 0 species subgroup 1944 1232139 species 1 0 Pseudomonas furukawaii 1149133 1944 2 0 species group 4145 136842 species 0 Pseudomonas fragi 1 296 1823 Pseudomonas chlororaphis 0 1 species 2322 587753 237610 376 species 0 Pseudomonas psychrotolerans 1 species 1 0 Pseudomonas antarctica 219572 294 species Pseudomonas silesiensis 0 1 1853130 1373 species 0 Pseudomonas parafulva 1 157782 584 14242 196821 30 0 no rank 319 2083053 1 0 Pseudomonas sp. SWI44 species species 1 Pseudomonas sp. JY-Q 0 1338689 364 493 2083052 1 Pseudomonas sp. SWI36 0 species 368 1207075 0 Pseudomonas sp. UW4 1 species 378 2083054 0 Pseudomonas sp. LG1D9 1 species 0 Pseudomonas sp. ATCC 13867 1 species 473 1294143 1611770 573 species 1 0 Pseudomonas sp. MRSN12121 1659194 325 species 0 Pseudomonas sp. GR 6-02 1 1 Pseudomonas sp. FGI182 0 species 289 1259844 1 Pseudomonas sp. TKP 0 species 1751 1415630 321 1649877 0 Pseudomonas sp. CCOS 191 1 species species 0 Pseudomonas sp. St29 1 1500687 400 1 0 Pseudomonas sp. Os17 species 452 1500686 1 Pseudomonas sp. SWI6 0 species 304 2083051 202 2018067 1 0 Pseudomonas sp. FDAARGOS_380 species 2083055 334 species 0 Pseudomonas sp. LH1G9 1 1 0 Pseudomonas sp. TCU-HL1 species 318 1856685 1 0 Pseudomonas sp. CC6-YY-74 species 918 1930532 species 0 Pseudomonas sp. PONIH3 1 1636610 412 351 2069256 1 0 Pseudomonas sp. XWY-1 species 349 1898684 Pseudomonas sp. LPH1 0 1 species 546 1534110 0 Pseudomonas sp. DR 5-09 1 species species 0 Pseudomonas sp. S-6-2 1 1931241 444 Pseudomonas sp. MYb193 0 1 species 196 1827300 405 2067572 0 Pseudomonas sp. NC02 1 species species 1 0 Pseudomonas sp. StFLB209 1028989 360 1 Pseudomonas sp. HLS-6 0 species 269 2049589 1 0 Pseudomonas sp. VLB120 species 257 69328 species 0 Pseudomonas sp. URMO17WK12:I11 1 1283291 1578 Pseudomonas sp. M30-35 0 1 species 493 1981174 species 0 Pseudomonas frederiksbergensis 1 104087 803 136845 11983 species group 6 0 species 1 Pseudomonas monteilii 0 76759 1013 769 47885 1 Pseudomonas oryzihabitans 0 species species 1 Pseudomonas mosselii 0 78327 2494 1 Pseudomonas plecoglossicida 0 species 415 70775 47880 549 species 1 Pseudomonas fulva 0 303 6743 species 1 Pseudomonas putida 0 101564 342 species 0 Pseudomonas alcaliphila 1 1 0 Pseudomonas lurida species 196 244566 species 1 0 Pseudomonas koreensis 198620 1121 42 Moraxellaceae 1 59 0 family 25350 468 6115 497 Psychrobacter 1 111 0 11 genus 45610 558 species 1 Psychrobacter urativorans 0 357 330922 Psychrobacter cryohalolentis 0 1 species 1 0 Psychrobacter alimentarius species 519 261164 196806 4081 no rank 6 0 377 1699622 0 Psychrobacter sp. P2G3 1 species species 1 0 Psychrobacter sp. P11G5 1699624 389 0 Psychrobacter sp. G 1 species 349 571800 1028416 659 species 1 Psychrobacter sp. DAB_AL43B 0 species 1 0 Psychrobacter sp. AntiMn-1 1720344 359 349106 1948 species 1 Psychrobacter sp. PRwf-1 0 1 Psychrobacter arcticus 0 species 489 334543 genus 5 0 22 Moraxella 1 475 2851 29433 205 species Moraxella ovis 0 1 674 480 0 Moraxella catarrhalis 1 species 1546 34062 0 Moraxella osloensis 1 species 404 386891 Moraxella bovoculi 0 1 species 469 16325 genus 1 Acinetobacter 189 0 25 species 0 Acinetobacter radioresistens 1 40216 250 species Acinetobacter schindleri 0 1 108981 399 1 Acinetobacter soli 0 species 713 487316 1 0 Acinetobacter indicus species 256 756892 Acinetobacter junii 0 1 species 615 40215 909768 7782 species group 5 0 0 Acinetobacter baumannii 1 species 3034 470 species 0 Acinetobacter pittii 1 48296 2480 471 1092 species 0 Acinetobacter calcoaceticus 1 1785128 452 species 0 Acinetobacter lactucae 1 0 Acinetobacter nosocomialis 1 species 724 106654 species Acinetobacter oleivorans 0 1 1148157 568 species Acinetobacter bereziniae 0 1 106648 426 species 0 Acinetobacter equi 1 1324350 515 species 1 Acinetobacter larvae 0 1789224 462 196816 2933 no rank 7 0 1407071 469 species 0 Acinetobacter sp. TGL-Y2 1 325 1808001 Acinetobacter sp. LoGeW2-3 0 1 species 2079596 505 species 0 Acinetobacter sp. SWBY1 1 1 0 Acinetobacter sp. TTH0-4 species 414 1646498 326 1758189 Acinetobacter sp. ACNIH2 0 1 species 378 1608473 1 Acinetobacter sp. NCu2D-2 0 species 1636603 516 species 1 0 Acinetobacter sp. ACNIH1 1 0 Acinetobacter haemolyticus species 478 29430 1 0 Acinetobacter johnsonii species 328 40214 411 202950 0 1 species 62977 411 strain Acinetobacter sp. ADP1 0 1 no rank 0 12 118884 5511 32036 1717 clade 0 4 species 0 Calyptogena okutanii thioautotrophic gill symbiont 1 410330 641 1541743 563 genus 0 2 Candidatus Ruthia 1 2 0 Candidatus Ruthia magnifica 1 species 561 386487 0 Bathymodiolus septemdierum thioautotrophic gill symbiont 1 species 513 113267 1 0 genus 272 349742 0 Sedimenticola thiotaurini 1 species 272 1543721 genus 2 0 2 Pseudohongiella 1 1524249 442 1249552 440 species 1 Pseudohongiella spirulinae 0 636 198346 0 1 clade 636 186490 0 Candidatus Baumannia cicadellinicola 1 species 1 0 genus 288 1608298 1076588 288 species Thiolapillus brandeum 0 1 genus 9 0 Candidatus Thioglobus 1 3 655184 2156 species 0 Candidatus Thioglobus singularis 1 1427364 1632 0 Candidatus Thioglobus autotrophicus 1 species 515 1705394 order 69 Oceanospirillales 1 60 0 135619 24994 3 Oleiphilaceae 1 18 0 family 756 191033 738 141450 1 Oleiphilus 6 0 2 genus species 1 Oleiphilus messinensis 0 141451 732 1920240 1767 family Kangiellaceae 1 0 4 6 1763 261963 5 0 39 Kangiella 1 genus 395 914150 0 Kangiella geojedonensis 1 species species 1 Kangiella sediminilitoris 0 1144748 338 1561924 493 species 0 Kangiella profundi 1 261964 498 species 1 Kangiella koreensis 0 family 0 22 1 Alcanivoracaceae 9 224372 2529 0 38 Alcanivorax 1 6 genus 2080 59753 513 285091 Alcanivorax dieselolei 0 1 species 1306787 379 species Alcanivorax pacificus 0 1 0 Alcanivorax borkumensis 1 species 421 59754 no rank 0 1 2638842 374 Alcanivorax sp. NBRC 101098 0 1 species 374 1113728 Alcanivorax xenomutans 0 1 species 355 1094342 2 11 0 Ketobacter 1 genus 427 2025617 species 1 0 Ketobacter alkanivorans 1917421 416 5 1 Saccharospirillaceae 3 0 family 1877 255527 230494 1376 genus 1 Reinekea 0 4 2 species 1 0 Reinekea forsetii 1336806 1372 2 3 0 Gynuella 1 genus 498 1445504 species Gynuella sunshinyii 0 1 1445505 495 family 13 0 26 Oceanospirillaceae 1 135620 5861 188907 719 genus 8 0 1 Oleispira 2 0 Oleispira antarctica 1 species 711 188908 1537406 754 genus 1 Bacterioplanes 3 0 2 species 1 0 Bacterioplanes sanyensis 1249553 751 1074 187492 2 0 1 1 Thalassolituus genus 1073 187493 0 Thalassolituus oleivorans 1 species genus 2 1 0 1 Marinobacterium 48075 1051 1 Marinobacterium aestuarii 0 species 1050 1821621 Marinomonas 1 35 0 4 genus 2237 28253 no rank 0 1 196814 898 400668 898 species 1 Marinomonas sp. MWYL1 0 936476 697 species 1 0 Marinomonas posidonica 607 119864 0 Marinomonas mediterranea 1 species 11118 28256 30 0 63 1 Halomonadaceae family 2002 114403 5 0 no rank 103 114185 0 1 1 Candidatus Carsonella 2 genus 114186 102 species 1 Candidatus Carsonella ruddii 0 1495768 334 genus 0 1 species 1 Candidatus Evansia muelleri 0 1495769 334 2 0 18 Candidatus Portiera 1 genus 1565 235572 91844 1547 species 0 Candidatus Portiera aleyrodidarum 1 389 376488 0 1 genus 376489 389 species Halotalea alkalilenta 0 1 404432 444 genus Salinicola 1 6 0 2 1 Salinicola tamaricis 0 species 438 1771309 genus 0 1 Cobetia 1 2 204286 716 28258 715 species 1 Cobetia marina 0 856 504090 3 Kushneria 1 14 0 genus species Kushneria marisflavi 0 1 157779 282 560 698828 1 0 Kushneria konosiri species 6388 2745 15 Halomonas 1 0 82 genus 8 0 no rank 3686 2609666 438 1971364 Halomonas sp. GT 0 1 species 1504981 336 species Halomonas sp. KO116 0 1 species 1 Halomonas sp. 'Soap Lake #7' 0 1962264 421 1118153 321 species Halomonas sp. GFAJ-1 0 1 species Halomonas sp. SF2003 0 1 2136172 451 860 1610576 Halomonas sp. R57-5 0 1 species 440 1883416 0 Halomonas sp. 1513 1 species species Halomonas sp. 'Soap Lake #6' 0 1 1949203 419 0 Halomonas huangheensis 1 species 508 1178482 475662 622 species 0 Halomonas beimenensis 1 115561 464 species 0 Halomonas hydrothermalis 1 282 213554 1 Halomonas campaniensis 0 species 473 1897729 Halomonas aestuarii 0 1 species 507626 271 species 0 Halomonas chromatireducens 1 1 0 genus 260 42054 260 158080 0 Chromohalobacter salexigens 1 species family 0 2 224379 1026 158481 1026 genus 2 3 0 Hahella 1 species Hahella chejuensis 0 1 158327 1023 383 1775403 1 0 1 Nevskiales 4 order family 1 Sinobacteraceae 0 568386 1 2689614 381 family 2 0 genus 2 1 Steroidobacter 8 0 469322 381 species 0 Steroidobacter denitrificans 1 465721 373 52 181 0 Xanthomonadales 1 order 74421 135614 3390 1775411 13 0 26 1 Rhodanobacteraceae family 1 0 genus 210 2233801 0 Xanthomonadales bacterium D13 1 species 210 2021234 231454 1200 genus 4 14 0 Dyella 1 species 1 Dyella jiangningensis 0 1379159 306 1 0 Dyella japonica species 490 231455 445710 390 species 0 Dyella thiooxydans 1 323413 578 genus 2 1 Dokdonella 4 0 323415 574 species 0 Dokdonella koreensis 1 75309 527 genus 1 0 Rhodanobacter 1 2 species 0 Rhodanobacter denitrificans 1 666685 526 554 70411 2 7 0 Frateuria 1 genus 547 81475 0 Frateuria aurantia 1 species genus 0 1 242605 295 295 242606 0 Luteibacter rhizovicinus 1 species 420 0 Xanthomonadaceae 1 38 family 70850 32033 10299 68 Lysobacter 1 0 34 5 genus 0 Lysobacter enzymogenes 1 species 767 69 3084 435897 1 0 Lysobacter capsici species 1 0 Lysobacter gummosus species 1458 262324 84531 4956 species 0 Lysobacter antibioticus 1 0 1 genus 386 83614 1 Luteimonas sp. 100111 0 species 386 2006110 2 1 Xylella 0 4 genus 5452 2370 2371 5448 species Xylella fastidiosa 0 1 15425 40323 1 Stenotrophomonas 159 0 9 genus 128780 1387 species 0 Stenotrophomonas acidaminiphila 1 species 1 Stenotrophomonas rhizophila 0 216778 513 196198 4099 no rank 0 4 0 Stenotrophomonas sp. MYb57 1 species 1648 1827305 species 0 Stenotrophomonas sp. WZN-1 1 2005046 1091 species 1 0 Stenotrophomonas sp. LM091 1904944 398 962 1793721 1 0 Stenotrophomonas sp. KCTC 12332 species 0 1 species group 8356 995085 1 0 Stenotrophomonas maltophilia species 8356 40324 83617 911 species 1 Stenotrophomonas nitritireducens 0 3 15 0 1 Pseudoxanthomonas genus 1594 83618 495 415229 1 0 Pseudoxanthomonas spadix species 1084 314722 0 Pseudoxanthomonas suwonensis 1 species 338 0 1 Xanthomonas 17 genus 37274 338 516 442694 1 Xanthomonas perforans 0 species 1985254 645 species 0 Xanthomonas phaseoli 1 Xanthomonas axonopodis 0 1 species 467 53413 species Xanthomonas vesicatoria 0 1 56460 1030 Xanthomonas vasicola 0 1 species 387 56459 366650 621 species 1 Xanthomonas alfalfae 0 795 456327 1 0 Xanthomonas euvesicatoria species 56454 461 species 0 Xanthomonas hortorum 1 species group 0 2 643453 8932 0 Xanthomonas fuscans 1 species 1877 366648 346 7055 species Xanthomonas citri 0 1 48664 2383 species 0 Xanthomonas fragariae 1 1 0 Xanthomonas albilineans species 621 29447 2509 343 0 Xanthomonas translucens 1 species 339 4673 species 1 Xanthomonas campestris 0 species 0 Xanthomonas sacchari 1 56458 660 Xanthomonas oryzae 0 1 species 12236 347 135623 53767 order 1 Vibrionales 0 38 44 53729 641 1 Vibrionaceae 133 0 43 family 662 25264 genus 30 341 0 1 Vibrio 846 190893 1 Vibrio coralliilyticus 0 species 717610 9576 species group 0 10 species Vibrio natriegens 0 1 691 857 501 696485 1 Vibrio owensii 0 species 670 3029 species 1 Vibrio parahaemolyticus 0 1280 680 0 Vibrio campbellii 1 species 1 Vibrio rotiferianus 0 species 445 190895 766224 225 species Vibrio jasicida 0 1 663 1430 species 1 0 Vibrio alginolyticus 822 2315253 0 2 species subgroup 1 0 Vibrio antiquarius species 276 150340 1 0 Vibrio diabolicus species 546 50719 669 987 species 1 0 Vibrio harveyi 666 979 species 1 Vibrio cholerae 0 29494 420 species 1 Vibrio furnissii 0 676 378 species 0 Vibrio fluvialis 1 1 Vibrio nigripulchritudo 0 species 314 28173 1 0 Vibrio tapetis species 874 52443 45658 877 species 1 Vibrio scophthalmi 0 no rank 0 2 2614977 607 species 1 0 Vibrio sp. EJY3 1116375 381 226 2014742 Vibrio sp. 2521-89 0 1 species 674 572 species 1 0 Vibrio mimicus species Vibrio hyugaensis 0 1 1534743 438 species 1 Vibrio anguillarum 0 55601 1412 1 Vibrio breoganii 0 species 369 553239 0 Vibrio gazogenes 1 species 566 687 2025808 326 species Vibrio qinghaiensis 0 1 1435069 637 species 1 Vibrio tritonius 0 species group 1 0 1891919 1333 species Vibrio tubiashii 0 1 29498 1333 672 2500 species 1 0 Vibrio vulnificus 1899 212663 1 0 Vibrio tasmaniensis species 823 2042066 2 0 1 Paraphotobacterium 1 genus species 0 Paraphotobacterium marinum 1 1755811 822 657 24595 genus 4 0 8 Photobacterium 1 species Photobacterium profundum 0 1 74109 938 species 0 Photobacterium damselae 1 38293 23306 1295392 343 species 1 0 Photobacterium gaetbulicola 511678 2607 genus 0 20 Aliivibrio 1 4 40269 471 species 1 0 Aliivibrio salmonicida 1245 80852 1 Aliivibrio wodanis 0 species 668 871 species 1 Aliivibrio fischeri 0 genus 0 4 Grimontia 1 2 246861 307 species 0 Grimontia hollisae 1 673 303 127810 135622 104 Alteromonadales 1 155 0 order 3 0 1 Ferrimonadaceae 1 family 305 267892 genus 1 Ferrimonas 0 3 2 44011 304 species Ferrimonas balearica 0 1 44012 301 24568 267890 25 Shewanellaceae 1 0 22 family genus 1 Shewanella 0 174 24 22 24546 1 Shewanella sediminis 0 species 2299 271097 2628 196818 6 0 no rank 296 2029986 1 Shewanella sp. WE21 0 species 362 60481 1 Shewanella sp. MR-7 0 species 60480 254 species 1 0 Shewanella sp. MR-4 94122 505 species 0 Shewanella sp. ANA-3 1 1 Shewanella sp. W3-18-1 0 species 659 351745 552 2059264 0 Shewanella sp. Pdp11 1 species 1 Shewanella halifaxensis 0 species 1821 271098 1 0 Shewanella woodyi species 1215 60961 2018305 254 species 0 Shewanella bicestrii 1 959 93973 0 Shewanella japonica 1 species 256 359303 Shewanella loihica 0 1 species Shewanella baltica 0 1 species 2939 62322 6813 60217 0 Shewanella violacea 1 species 225848 1038 species 1 0 Shewanella psychrophila 372 404011 Shewanella piezotolerans 0 1 species species Shewanella putrefaciens 0 1 24 430 310 260364 Shewanella marisflavi 0 1 species species 1 Shewanella denitrificans 0 192073 1086 1 Shewanella amazonensis 0 species 295 60478 242 70863 0 Shewanella oneidensis 1 species 974 56812 1 0 Shewanella frigidimarina species species 1 0 Shewanella pealeana 70864 441 1095 267891 3 17 0 Moritellaceae 1 family genus 2 1 Moritella 9 0 58050 1078 1069 80854 Moritella viscosa 0 1 species 25 0 10 Pseudoalteromonadaceae 1 family 25051 267888 1 Pseudoalteromonas 226 0 24 genus 25041 53246 0 Pseudoalteromonas translucida 1 species 654 166935 species 0 Pseudoalteromonas luteoviolacea 1 43657 584 0 Pseudoalteromonas marina 1 species 485 267375 Pseudoalteromonas atlantica 0 1 species 1773 288 247523 429 species Pseudoalteromonas aliena 0 1 612 28109 Pseudoalteromonas nigrifaciens 0 1 species 152297 612 species 1 0 Pseudoalteromonas issachenkonii species 1 0 Pseudoalteromonas piratica 1348114 543 594 314281 Pseudoalteromonas tunicata 0 1 species species 1 0 Pseudoalteromonas tetraodonis 43659 533 736 298657 0 Pseudoalteromonas spongiae 1 species 176102 1416 species 1 0 Pseudoalteromonas agarivorans species 0 Pseudoalteromonas haloplanktis 1 228 560 13102 194690 5 0 no rank 1 Pseudoalteromonas sp. NC201 0 species 10503 1514074 1 0 Pseudoalteromonas sp. SM9913 species 790 234831 1 0 Pseudoalteromonas sp. 13-15 species 689 1761891 613 283699 Pseudoalteromonas sp. Bsw20308 0 1 species 1 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 507 1720343 species 1 0 Pseudoalteromonas piscicida 43662 328 28107 495 species 1 0 Pseudoalteromonas espejiana 512 161398 1 Pseudoalteromonas phenolica 0 species 492 394751 1 0 Pseudoalteromonas arctica species species Pseudoalteromonas rubra 0 1 43658 355 6 1 Idiomarinaceae 0 3 family 1427 267893 genus 5 0 7 Idiomarina 1 135575 1424 no rank 0 2 2614829 686 0 Idiomarina sp. X4 1 species 336 2055892 1 Idiomarina sp. OT37-5b 0 species 350 2100422 1096243 390 species 0 Idiomarina piscisalsi 1 341 135577 Idiomarina loihiensis 0 1 species 72275 65780 family 29 0 43 Alteromonadaceae 1 226 56492 genus Alteromonas 1 185 0 10 6206 2614992 0 3 no rank 3898 1777491 1 0 Alteromonas sp. Mac1 species species 0 Alteromonas sp. MB-3u-76 1 2058133 1068 0 Alteromonas sp. RW2A1 1 species 1240 1917158 1 Alteromonas naphthalenivorans 0 species 31118 715451 species 1 0 Alteromonas addita 287094 4267 4619 314275 1 0 Alteromonas mediterranea species 0 Alteromonas stellipolaris 1 species 5173 233316 species 0 Alteromonas australica 1 589873 1117 3807 28108 1 0 Alteromonas macleodii species 1751872 2592 genus 1 0 Lacimicrobium alkaliphilum 0 1 species 2592 1526571 372 261825 1 Agarivorans 2 0 2 genus Agarivorans gilvus 0 1 species 370 680279 1372 1621534 Paraglaciecola 1 0 2 2 genus species 1 0 Paraglaciecola psychrophila 326544 1370 3 1 Glaciecola 2 0 genus 1390 89404 300231 612 species 0 Glaciecola nitratireducens 1 0 1 no rank 776 2618684 983545 776 species Glaciecola sp. 4H-3-7+YE-5 0 1 genus Marinobacter 1 0 82 10 2742 3519 1420916 259 species 1 0 Marinobacter similis no rank 0 3 83889 1050 1671721 238 species Marinobacter sp. CP1 0 1 0 Marinobacter sp. BSs20148 1 species 500 490759 312 1749259 0 Marinobacter sp. LQ44 1 species species 0 Marinobacter adhaerens 1 1033846 191 330734 488 species 1 0 Marinobacter psychrophilus 1420917 649 species 1 0 Marinobacter salarius 307 1874317 0 Marinobacter salinus 1 species 2743 493 species 1 Marinobacter hydrocarbonoclasticus 0 0 3 family 2436 267894 2436 67572 3 1 Psychromonas 0 6 genus 357794 1499 species 1 Psychromonas ingrahamii 0 0 1 no rank 931 2614957 species 1 0 Psychromonas sp. CNPT3 314282 931 family 7 0 Colwelliaceae 1 9 267889 6993 6161 28228 0 23 1 Colwellia 6 genus 1967665 1008 species 1 0 Colwellia beringensis no rank 0 3 196834 4102 1 Colwellia sp. PAMC 20917 0 species 1698 1816218 Colwellia sp. MT41 0 1 species 1049 58049 1355 1816219 0 Colwellia sp. PAMC 21821 1 species 1028 28229 Colwellia psychrerythraea 0 1 species 1 Thalassotalea 0 2 2 genus 825 1518149 Thalassotalea crassostreae 0 1 species 823 1763536 class 9 Oligoflexia 1 1 0 1553900 1771 2024979 832 order 3 0 25 1 Bacteriovoracales 1652132 561 family 1 0 1 0 genus 561 1652133 561 97084 1 Halobacteriovorax marinus 0 species 246 263369 0 1 family genus 1 0 146784 246 960 246 species 0 Bacteriovorax stolpii 1 order 5 10 0 1 Bdellovibrionales 213481 938 family 4 0 8 1 Bdellovibrionaceae 213483 928 genus 4 0 1 Bdellovibrio 3 958 920 1 Bdellovibrio bacteriovorus 0 species 724 959 453816 192 species 1 0 Bdellovibrio exovorus 516770 28211 549 0 240 1 Alphaproteobacteria class order Sphingomonadales 1 0 81 81 204457 24193 family Sphingomonadaceae 1 0 107 58 41297 19849 3832 165697 0 42 1 Sphingopyxis 10 genus species 1 0 Sphingopyxis terrae 33052 372 33050 584 species Sphingopyxis macrogoltabida 0 1 species Sphingopyxis alaskensis 0 1 117207 283 2614943 1741 no rank 4 0 306 292913 1 0 Sphingopyxis sp. 113P3 species 1357916 540 species 1 0 Sphingopyxis sp. QXT-31 1 Sphingopyxis sp. LPB0140 0 species 456 1913578 species Sphingopyxis sp. MG 0 1 1866325 439 0 Sphingopyxis granuli 1 species 399 267128 species 1 Sphingopyxis fribergensis 0 1515612 411 0 21 1 Sphingorhabdus 3 genus 491 1434046 2614947 470 no rank 0 2 species 1 0 Sphingorhabdus sp. YGSMI21 2077182 237 species 0 Sphingorhabdus sp. M41 1 1806885 233 165696 1401 genus 5 1 Novosphingobium 0 26 Novosphingobium resinovorum 0 1 species 473 158500 2644732 258 no rank 1 0 702113 258 species 0 Novosphingobium sp. PP1Y 1 205844 405 species 1 Novosphingobium pentaromativorans 0 species 1 0 Novosphingobium aromaticivorans 48935 239 genus 15 0 88 Sphingomonas 1 13687 7194 0 Sphingomonas hengshuiensis 1 species 420 1609977 93064 345 species 0 Sphingomonas koreensis 1 species 1 0 Sphingomonas melonis 152682 383 497 1549858 1 0 Sphingomonas taxi species 196159 3115 no rank 6 0 1327635 397 species 0 Sphingomonas sp. Cra20 1 1426 1390395 1 Sphingomonas sp. LK11 0 species species 1 0 Sphingomonas sp. MM-1 745310 359 species 1 0 Sphingomonas sp. NIC1 1961362 318 species 1 Sphingomonas sp. KC8 0 1030157 314 0 Sphingomonas sp. LM7 1 species 301 1938607 431 1560345 1 0 Sphingomonas panacis species 2 1 Sphingomonas wittichii 622 0 species 1186 160791 1283312 564 strain 1 0 Sphingomonas sp. DC-6 397260 729 species 1 Sphingomonas sanxanigenens 0 224 2685927 1 0 genus 224 1921510 1 0 Sphingomonas sp. JJ-A5 species 0 1 genus 571 541 species Zymomonas mobilis 0 1 542 571 2 0 5 1 Rhizorhabdus genus 403 1649486 species 1 Rhizorhabdus dicambivorans 0 1850238 398 1 0 genus 221 2709685 species 1 Sphingorhabdus flavimaris 0 266812 221 2 0 3 Blastomonas 1 genus 353 150203 350 2626550 1 0 no rank 350 1842535 0 Blastomonas sp. RAC04 1 species 1 Citromicrobium 7 0 2 genus 271 72173 0 1 no rank 264 2630544 264 1634516 0 Citromicrobium sp. JL477 1 species 4781 165695 0 88 1 Sphingobium 15 genus 0 Sphingobium herbicidovorans 1 species 212 76947 0 Sphingobium japonicum 1 species 341 332056 no rank 0 6 2611147 1754 species Sphingobium sp. EP60837 0 1 1855519 199 484429 319 species 1 0 Sphingobium sp. YBL2 0 Sphingobium sp. RAC03 1 species 292 1843368 species 1 0 Sphingobium sp. MI1205 407020 221 1315974 356 species Sphingobium sp. TKS 0 1 627192 367 species 1 0 Sphingobium sp. SYK-6 282 46429 1 0 Sphingobium chlorophenolicum species species 0 Sphingobium hydrophobicum 1 1673076 208 species 1 Sphingobium baderi 0 1332080 216 120107 259 species 1 0 Sphingobium cloacae 0 Sphingobium yanoikuyae 1 species 1064 13690 357 332055 1 Sphingobium indicum 0 species 335929 4263 family 43 0 1 Erythrobacteraceae 22 genus 2 0 2800681 686 1648404 371 species 0 Erythrobacter atlanticus 1 1 0 Erythrobacter gangjinensis species 315 502682 362 1855416 2 0 genus species Erythrobacter seohaensis 0 1 266951 134 228 192812 1 Erythrobacter flavus 0 species 3 11 0 Croceicoccus 1 genus 565 1295327 363 450378 Croceicoccus marinus 0 1 species species Croceicoccus naphthovorans 0 1 1348774 191 1284 2800788 6 0 no rank genus 0 17 Porphyrobacter 1 3 1111 551 2683265 534 no rank 2 0 species 0 Porphyrobacter HT-58-2 1 2023229 342 1896196 192 species 1 0 Porphyrobacter sp. LM 6 733 1041 59 0 1 Erythrobacter 3 genus 442 39960 Erythrobacter litoralis 0 1 species 0 Porphyrobacter neustonensis 1 species 232 1112 389 2800686 2 0 genus 692370 191 species 1 Altererythrobacter dongtanensis 0 198 1982042 Altererythrobacter mangrovi 0 1 species 2800685 189 genus 0 1 0 Altererythrobacter marensis 1 species 189 543877 57 0 Altererythrobacter 1 4 genus 489 361177 476157 123 species 1 Altererythrobacter ishigakiensis 0 species 1 0 Altererythrobacter atlanticus 1267766 201 1 0 Altererythrobacter epoxidivorans species 108 361183 genus 0 1 2800682 256 species 1 0 Altererythrobacter namhicola 645517 256 356 79379 order 208 1 Rhizobiales 0 359 1 Rhizobiaceae 0 155 55 family 23277 82115 227292 5623 no rank 10 0 4820 28105 7 52 0 Sinorhizobium 1 genus 2613772 904 no rank 0 2 424 794846 Sinorhizobium sp. CCBAU 05631 0 1 species 480 1842534 1 0 Sinorhizobium sp. RAC02 species 110321 983 species 1 0 Sinorhizobium medicae 194963 394 species 0 Sinorhizobium americanum 1 Sinorhizobium meliloti 0 1 species 1304 382 1183 663276 1 0 species group 0 Sinorhizobium fredii 1 species 1183 380 genus 0 3 Ensifer 1 3 106591 803 409 106592 1 Ensifer adhaerens 0 species 391 716925 1 Ensifer sojae 0 species 227290 14938 no rank 0 36 357 3651 genus 7 Agrobacterium 1 44 0 260 359 1 Agrobacterium rhizogenes 0 species 2632611 639 no rank 0 2 269 861208 Agrobacterium sp. H13-3 0 1 species species Agrobacterium sp. RAC06 0 1 1842536 370 1 0 Agrobacterium vitis species 346 373 2 0 species group 2362 1183400 species 1 Agrobacterium fabrum 0 1176649 271 358 2091 species 0 Agrobacterium tumefaciens 1 490 1525371 1 Neorhizobium 3 0 2 genus 1 0 Neorhizobium galegae species 487 399 10797 379 1 Rhizobium 764 0 27 genus 1460 396 0 Rhizobium phaseoli 1 species Rhizobium tropici 0 1 species 315 398 3810 2613769 21 0 no rank Rhizobium sp. NT-26 0 1 species 296 1125847 1301032 285 species Rhizobium sp. IE4771 0 1 species 1 0 Rhizobium sp. Y9 1914541 199 1703968 3 species 1 Rhizobium sp. N871 0 8 1703962 0 Rhizobium sp. N1341 1 species 1703961 81 species 1 Rhizobium sp. N1314 0 species 1 Rhizobium sp. NXC24 0 2048897 308 species Rhizobium sp. N113 0 1 1703960 6 1 Rhizobium sp. NXC14 0 species 231 1981173 1703966 81 species 0 Rhizobium sp. N731 1 0 Rhizobium sp. 10195 1 species 300 2028343 1703964 5 species 1 0 Rhizobium sp. N621 113 2020313 1 Rhizobium sp. TAL182 0 species species 1 Rhizobium sp. N741 0 1703967 4 species 1 0 Rhizobium sp. N6212 1703965 5 species 0 Rhizobium sp. CIAT894 1 2020312 282 species 1 Rhizobium sp. IRBG74 0 424182 378 species 0 Rhizobium sp. S41 1 1869170 262 1 0 Rhizobium sp. ACO-34A species 341 1571470 0 Rhizobium sp. N324 1 species 326 1703969 species 0 Rhizobium sp. Kim5 1 2020311 296 2489 384 1 0 Rhizobium leguminosarum species 1330 29449 1 Rhizobium etli 0 species Rhizobium gallicum 0 1 species 629 56730 323620 769 genus 7 0 1 Shinella 2 no rank 0 1 2643062 762 0 Shinella sp. HZN7 1 species 762 879274 1 Liberibacter 9 0 6 genus 1792 34019 309868 411 species 1 Candidatus Liberibacter americanus 0 species 0 Candidatus Liberibacter asiaticus 1 34021 318 0 Candidatus Liberibacter solanacearum 1 species 322 556287 Liberibacter crescens 0 1 species 378 1273132 354 34020 Candidatus Liberibacter africanus 0 1 species 19 14 0 Phyllobacteriaceae 1 family 8884 69277 0 1 genus 270 28100 1 Phyllobacterium zundukense 0 species 270 1867719 genus 2 Chelativorans 1 7 0 449972 194 no rank 1 0 2643807 187 1 Chelativorans sp. BNC1 0 species 187 266779 68287 6212 genus 9 Mesorhizobium 1 0 144 961 325217 1 0 no rank 961 278153 Mesorhizobium sp. WSM1497 0 1 species 1 Mesorhizobium ciceri 0 species 844 39645 1 Mesorhizobium opportunistum 0 species 564 593909 1 Mesorhizobium loti 0 species 1468 381 2066070 648 species Mesorhizobium japonicum 0 1 species 1 Mesorhizobium australicum 0 536018 594 446 1670800 Mesorhizobium sp. B7 0 1 species 543 71433 0 Mesorhizobium amorphae 1 species 277 245876 2 1 Nitratireductor 0 25 genus species Nitratireductor basaltis 0 1 472175 252 genus 2 1 Aminobacter 0 15 31988 1333 1318 83263 Aminobacter aminovorans 0 1 species genus 1 Hoeflea 7 0 2 274591 584 2614931 577 no rank 0 1 species 1 Hoeflea sp. IMCC20628 0 1620421 577 family 1 Xanthobacteraceae 0 8 7 335928 2087 genus 2 0 2 1 Xanthobacter 279 978 976 280 0 Xanthobacter autotrophicus 1 species 152053 612 genus 7 0 Starkeya 1 2 species 1 Starkeya novella 0 921 605 6 489 genus 2 4 0 Azorhizobium 1 species 0 Azorhizobium caulinodans 1 7 485 family 1 Bradyrhizobiaceae 0 70 26 41294 14592 1073 3727 genus 2 1 Rhodopseudomonas 38 0 species 1 Rhodopseudomonas palustris 0 1076 3689 genus 0 5 Variibacter 1 2 1649510 307 302 1333996 1 Variibacter gotjawalensis 0 species 240 40136 2 8 0 1 Oligotropha genus 0 Oligotropha carboxidovorans 1 species 232 40137 genus 26 0 1 Bosea 5 85413 1866 1303 2653178 0 3 no rank Bosea sp. AS-1 0 1 species 369 2015316 1792307 324 species 1 0 Bosea sp. PAMC 26642 1842539 610 species 1 Bosea sp. RAC05 0 1526658 537 species 1 0 Bosea vaviloviae 374 7735 genus 11 Bradyrhizobium 1 85 0 375 1129 species 0 Bradyrhizobium japonicum 1 Bradyrhizobium diazoefficiens 0 1 species 1261 1355477 404 1274631 Bradyrhizobium icense 0 1 species 6 0 no rank 4138 2631580 2057741 706 species Bradyrhizobium sp. SK17 0 1 species 1 Bradyrhizobium sp. BTAi1 0 288000 623 species 1 0 Bradyrhizobium sp. ORS 285 115808 588 114615 744 species Bradyrhizobium sp. ORS 278 0 1 0 Bradyrhizobium sp. 1 species 844 376 species 1 0 Bradyrhizobium sp. CCGE-LA001 1223566 633 1 0 Bradyrhizobium oligotrophicum species 718 44255 647 911 0 9 Nitrobacter 1 3 genus 912 413 species Nitrobacter hamburgensis 0 1 1 Nitrobacter winogradskyi 0 species 225 913 1163 2036754 1 Chelatococcaceae 0 11 4 family genus 0 11 1 Chelatococcus 3 28209 1152 444444 484 species 1 0 Chelatococcus daeguensis 1 0 no rank 657 2638111 657 1702325 Chelatococcus sp. CO-6 0 1 species no rank 6 0 119042 1161 281 1734920 2 1 0 1 Pseudorhodoplanes genus species 0 Pseudorhodoplanes sinuspersici 1 1235591 280 2 Hartmannibacter 1 8 0 genus 594 1572860 1482074 586 species 0 Hartmannibacter diazotrophicus 1 286 1484898 2 1 Methyloceanibacter 2 0 genus 1 0 Methyloceanibacter caenitepidi species 284 1384459 family Beijerinckiaceae 1 0 4 4 45404 925 532 586 genus 1 0 0 Beijerinckia indica 1 species 586 533 1 Methylocella 2 0 2 genus 335 120652 0 Methylocella silvestris 1 species 333 199596 119045 9533 family 1 Methylobacteriaceae 0 18 15 486 186650 0 7 Microvirga 1 2 genus species 1 0 Microvirga ossetica 1882682 479 2282523 3596 genus 3 0 2113 408 0 Methylobacterium extorquens 1 species 223967 1015 species 1 0 Methylobacterium populi 1 0 Methylobacterium zatmanii species 468 29429 5433 407 0 84 1 Methylobacterium 9 genus species 1 Methylobacterium oryzae 0 334852 493 3 0 no rank 2108 2615210 0 Methylobacterium sp. C1 1 species 578 1479019 426117 1022 species Methylobacterium sp. 4-46 0 1 925818 508 species Methylobacterium sp. AMS5 0 1 species 1 Methylobacterium aquaticum 0 270351 734 31998 671 species 1 Methylobacterium radiotolerans 0 630 418223 1 Methylobacterium phyllosphaerae 0 species 114616 713 species 1 Methylobacterium nodulans 0 1498 255475 7 Aurantimonadaceae 1 10 0 family genus 4 14 0 Martelella 1 293088 1064 1486262 271 species 1 0 Martelella endophytica species Martelella mediterranea 0 1 293089 390 389 2629616 0 1 no rank 0 Martelella sp. AD-3 1 species 389 686597 2 5 0 Aureimonas 1 genus 424 414371 0 1 no rank 419 2615206 1 0 Aureimonas sp. AU20 species 419 1349819 family 1 Rhodobiaceae 0 1 3 119043 289 288 256616 2 0 Parvibaculum 1 2 genus species Parvibaculum lavamentivorans 0 1 256618 286 45401 4523 family 18 Hyphomicrobiaceae 1 14 0 2 6 0 1 Rhodoplanes genus 640 29407 no rank 0 1 2619116 634 1 Rhodoplanes sp. Z2-YC6860 0 species 634 674703 264 1082930 0 3 Pelagibacterium 1 2 genus 1 0 Pelagibacterium halotolerans species 261 531813 1068 225 genus Rhodomicrobium 1 0 4 2 Rhodomicrobium vannielii 0 1 species 221 1069 1153 46913 1 Devosia 19 0 4 genus 196773 1134 no rank 0 3 1 Devosia sp. I507 0 species 252 2083786 1643450 380 species 0 Devosia sp. H5989 1 502 1736675 0 Devosia sp. A16 1 species 1 Hyphomicrobium 23 0 4 genus 1589 81 984 2619925 0 1 no rank species 0 Hyphomicrobium sp. MC1 1 717785 984 species Hyphomicrobium denitrificans 0 1 53399 346 1427356 236 species Hyphomicrobium nitrativorans 0 1 59282 459 genus 2 Blastochloris 1 4 0 1 Blastochloris viridis 0 species 455 1079 1 0 genus 179 119044 Candidatus Filomicrobium marinum 0 1 species 179 1608628 family 0 17 Brucellaceae 1 20 118882 3053 234 1254 genus 14 1 Brucella 0 324 38 120577 Brucella ceti 0 1 species 46 36855 1 Brucella canis 0 species Brucella abortus 0 1 species 78 235 87 981386 0 Brucella vulpis 1 species 0 Brucella melitensis 1 species 60 29459 no rank 4 0 2632610 291 33 1891098 0 Brucella sp. 2002734562 1 species species 1 Brucella sp. 09RB8471 0 1149952 91 species 0 Brucella sp. 09RB8910 1 1844051 92 1885919 75 species 0 Brucella sp. 141012304 1 1 Brucella ovis 0 species 15 236 44 120576 1 Brucella pinnipedialis 0 species species 1 0 Brucella suis 29461 241 1 Brucella microti 0 species 30 444163 genus 8 0 1 Ochrobactrum 5 528 1782 1 0 Ochrobactrum anthropi species 234 529 419475 399 species Ochrobactrum pseudogrignonense 0 1 296 271865 Ochrobactrum sp. A44 0 1 species 845 571256 1 0 Ochrobactrum pituitosum species 6760 772 18 5 0 Bartonellaceae 1 family 6755 773 17 1 Bartonella 108 0 genus 774 387 species Bartonella bacilliformis 0 1 575 1686310 Bartonella apis 0 1 species 1 0 Bartonella ancashensis species 355 1318743 388640 244 species 1 Bartonella australis 0 33047 395 species 1 Bartonella vinsonii 0 no rank 6 0 2645622 2795 species 0 Bartonella sp. Raccoon60 1 1933912 428 species 0 Bartonella sp. JB15 1 1933906 464 464 1933907 0 Bartonella sp. JB63 1 species 1 0 Bartonella sp. 1-1C species 553 515256 0 Bartonella sp. WD16.2 1 species 463 1933904 423 1933910 Bartonella sp. A1379B 0 1 species 347 38323 1 0 Bartonella henselae species 1 Bartonella quintana 0 species 319 803 391 33045 1 Bartonella grahamii 0 species 459 85701 1 Bartonella tribocorum 0 species 1 0 Bartonella clarridgeiae species 380 56426 1275 31993 0 5 family 425 627 genus 1 Methylosinus 0 12 2 Methylosinus trichosporium 0 1 species 615 426 133 648 genus 3 Methylocystis 1 0 8 383 655015 Methylocystis bryophila 0 1 species 257 2625913 0 1 no rank Methylocystis sp. SC2 0 1 species 257 187303 204458 6726 order 19 1 Caulobacterales 0 36 6690 76892 18 68 0 1 Caulobacteraceae family 220 76890 0 1 genus species 1 0 Asticcacaulis excentricus 78587 220 283 81440 0 1 no rank 1 Caulobacteraceae bacterium OTSz_A_272 0 species 283 1759059 genus 0 14 1 Caulobacter 6 75 2832 species 1 0 Caulobacter segnis 88688 500 species 1 Caulobacter mirabilis 0 69666 446 549 2648921 1 0 no rank 549 366602 Caulobacter sp. K31 0 1 species 155892 888 species 1 0 Caulobacter vibrioides 69395 435 species 1 Caulobacter henricii 0 41275 2795 genus 7 1 Brevundimonas 50 0 275 588932 1 Brevundimonas naejangsanensis 0 species 999 74313 0 Brevundimonas subvibrioides 1 species species 0 Brevundimonas vesicularis 1 41276 259 no rank 3 0 2622653 1212 1827469 227 species 1 Brevundimonas sp. GW460-12-10-14-LB2 0 1 Brevundimonas sp. LM2 0 species 642 1938605 1532555 343 species Brevundimonas sp. DS20 0 1 20 492 genus 3 0 Phenylobacterium 1 2 0 Phenylobacterium zucineum 1 species 489 284016 order 4 1 Parvularculales 0 10 255473 1292 255474 1282 family 0 3 Parvularculaceae 1 3 4 0 Parvularcula 1 2 genus 1279 208215 1275 208216 Parvularcula bermudensis 0 1 species 1021 2800060 0 6 order family Hyphomonadaceae 1 3 0 6 69657 1021 genus 2 5 0 1 Hirschia 2723 573 species 1 0 Hirschia baltica 2724 568 445 85 3 1 Hyphomonas 9 0 genus 222 2630699 0 1 no rank 222 1906738 0 Hyphomonas sp. Mor2 1 species 81032 214 species 1 0 Hyphomonas neptunium 766 10256 order 55 0 22 Rickettsiales 1 306 1328881 0 2 family 306 411566 0 4 1 Candidatus Midichloria 2 genus 0 Candidatus Midichloria mitochondrii 1 species 302 234827 682 1699067 0 1 no rank Rickettsiales bacterium Ac37b 0 1 species 682 1528098 4977 942 23 0 7 1 Anaplasmataceae family 6 0 19 1 Ehrlichia genus 2250 943 no rank 1 0 106181 432 391036 432 species Ehrlichia sp. HF 0 1 1799 106178 0 4 species group 1 Ehrlichia chaffeensis 0 species 405 945 species 1 0 Ehrlichia ruminantium 779 590 35795 327 species 1 0 Ehrlichia muris species 1 Ehrlichia canis 0 944 477 genus 4 Neorickettsia 1 5 0 33993 292 93 950 Neorickettsia risticii 0 1 species 1 0 Neorickettsia sennetsu species 108 951 86 33994 Neorickettsia helminthoeca 0 1 species tribe 0 8 952 2044 2044 953 49 0 Wolbachia 1 8 genus 1995 2640676 7 0 no rank 245 246273 0 Wolbachia endosymbiont of Cimex lectularius 1 species 77038 454 species 0 Wolbachia endosymbiont of Drosophila simulans 1 0 Wolbachia endosymbiont of Drosophila melanogaster 1 species 236 163164 254 77551 Wolbachia endosymbiont of Onchocerca volvulus 0 1 species Wolbachia sp. wRi 0 1 species 262 66084 species 1 0 Wolbachia endosymbiont of Brugia malayi 80849 296 species 1 0 Wolbachia endosymbiont of Onchocerca ochengi 100901 248 384 768 4 0 2 1 Anaplasma genus 89 770 1 0 Anaplasma marginale species 769 66 species 1 Anaplasma centrale 0 106179 227 species group 0 1 948 227 species 1 Anaplasma phagocytophilum 0 family 0 12 1 Rickettsiaceae 28 775 4269 3912 33988 25 0 tribe 69474 622 genus 2 1 Orientia 0 6 Orientia tsutsugamushi 0 1 species 616 784 780 3290 genus 0 285 1 Rickettsia 23 1361 114277 0 17 species group species 1 0 Rickettsia conorii 781 10 1 0 Rickettsia akari species 195 786 226665 49 species Rickettsia heilongjiangensis 0 1 35794 11 species 1 Rickettsia slovaca 0 species 1 Rickettsia massiliae 0 35791 52 69 33992 1 0 Rickettsia rhipicephali species 22 35788 Rickettsia africae 0 1 species 1 Rickettsia japonica 0 species 40 35790 67 33989 1 0 Rickettsia amblyommatis species 246 42862 0 Rickettsia felis 1 species 57 783 Rickettsia rickettsii 0 1 species 1 Rickettsia monacensis 0 species 120 109232 species 1 0 Rickettsia philipii 1105106 43 35792 35 species 1 Rickettsia parkeri 0 1 0 Rickettsia montanensis species 38 33991 787 202 species 1 0 Rickettsia australis 105 47589 Rickettsia peacockii 0 1 species species group 2 0 114292 671 1 Rickettsia typhi 0 species 357 785 314 782 0 Rickettsia prowazekii 1 species 681 1129742 0 2 species group 1 Rickettsia canadensis 0 species 239 788 species 0 Rickettsia bellii 1 33990 442 292 114295 1 0 no rank 337479 292 species 1 Rickettsia endosymbiont of Bemisia tabaci 0 345 2115980 2 0 2 Candidatus Phycorickettsia 1 genus 1 0 Candidatus Phycorickettsia trachydisci species 343 2115978 204455 87811 order 87 142 0 1 Rhodobacterales 31989 87669 family 0 601 Rhodobacteraceae 1 86 genus 0 1 1649279 1074 Ruegeria mobilis 0 1 species 1074 379347 798 188905 2 Jannaschia 1 3 0 genus 795 2645469 0 1 no rank 795 290400 1 0 Jannaschia sp. CCS1 species 5512 265 0 77 1 Paracoccus 9 genus 246570 871 no rank 1 0 1529068 871 species 1 0 Paracoccus sp. BM15 species 1 Paracoccus aminovorans 0 34004 589 species 1 Paracoccus yeei 0 147645 855 species 1 0 Paracoccus aminophilus 34003 544 614 266 1 0 Paracoccus denitrificans species 675 1077935 1 Paracoccus zhejiangensis 0 species 1 Paracoccus sp. CBA4604 0 species 852 2065379 species Paracoccus contaminans 0 1 1945662 435 3589 1060 5 27 0 Rhodobacter 1 genus 2 0 no rank 1322 196779 1850250 719 species Rhodobacter sp. LPB0142 0 1 species Rhodobacter sp. CZR27 0 1 2033869 603 species 1 0 Rhodobacter sphaeroides 1063 1657 583 1061 Rhodobacter capsulatus 0 1 species 0 1 Pelagibaca 1 2 genus 1034 360528 species 1 0 Pelagibaca abyssi 1250539 1033 285107 554 genus 0 1 554 1915078 0 Thioclava nitratireducens 1 species genus 1 0 309512 871 871 215813 1 0 Dinoroseobacter shibae species genus 2 0 3 1 Roseovarius 74030 1361 1358 215743 0 Roseovarius mucosus 1 species genus 17 0 1 Roseobacter 3 2433 3364 species 0 Roseobacter litoralis 1 42443 1794 species Roseobacter denitrificans 0 1 2434 1553 2 0 no rank 1409 58840 545 2033435 1 Rhodobacteraceae bacterium QY30 0 species 1904441 864 species 1 0 Rhodobacteraceae bacterium 263377 1884 genus 0 2 species 1 Thiobacimonas profunda 0 1229727 801 no rank 0 1 2640570 1083 Yangia sp. CCB-MM3 0 1 species 1083 1792508 58842 716 genus 1 Sagittula 0 1 2 715 2624628 1 0 no rank 0 Sagittula sp. P11 1 species 715 2009329 880 119541 2 Rhodobaca 1 0 6 genus species 0 Rhodobaca barguzinensis 1 441209 874 1323 92944 0 2 1 Ketogulonicigenium 3 genus species 1 0 Ketogulonicigenium robustum 92947 652 1 0 Ketogulonicigenium vulgare species 669 92945 genus 3 30 0 1 Ruegeria 97050 2192 0 1 no rank 963 2625375 1 Ruegeria sp. TM1040 0 species 963 292414 89184 1199 species 1 Ruegeria pomeroyi 0 2 1 Marinovum 0 3 genus 1231 367771 species 0 Marinovum algicola 1 42444 1228 74032 1176 genus 0 1 species 0 Antarctobacter heliothermus 1 74033 1176 genus 2 7 0 1 Marivivens 1759396 798 1 0 no rank 791 2622455 1 Marivivens sp. JLT3646 0 species 791 1920883 227873 462 genus 2 1 Pannonibacter 16 0 121719 446 species 1 Pannonibacter phragmitetus 0 genus 3 Sulfitobacter 1 7 0 60136 2787 196795 1156 no rank 0 1 1 Sulfitobacter sp. AM1-D1 0 species 1156 1917485 1 Sulfitobacter pseudonitzschiae 0 species 1624 1402135 0 1 genus 1457 2211641 245188 1457 species Loktanella vestfoldensis 0 1 245186 5 genus 1 Loktanella 0 3050 34008 4 37 0 1 Rhodovulum genus 2631432 1468 no rank 0 2 841 308754 0 Rhodovulum sp. MB263 1 species species Rhodovulum sp. P5 0 1 1564506 627 35806 1545 species 1 0 Rhodovulum sulfidophilum genus 5 0 120 Phaeobacter 1 302485 10725 1 Phaeobacter gallaeciensis 0 species 2467 60890 species 1 0 Phaeobacter porticola 1844006 1083 2254 1580596 1 Phaeobacter piscinae 0 species 1 Phaeobacter inhibens 0 species 4801 221822 1 436357 Thalassococcus 0 1 genus 0 1 genus 875 1097466 Defluviimonas alba 0 1 species 875 1335048 53945 15522 genus 29 0 Octadecabacter 1 4 species 1 0 Octadecabacter arcticus 53946 6591 1217908 7808 species 1 Octadecabacter antarcticus 0 1094 1458307 1 0 Octadecabacter temperatus species 2 Planktomarina 1 1 0 genus 9008 1284657 species Planktomarina temperata 0 1 1284658 9007 159345 1005 genus 2 1 0 Roseibacterium 1 Roseibacterium elongatum 0 1 species 1004 159346 299261 879 genus 0 1 299262 879 species 1 0 Tateyamaria omphalii 875170 4290 genus 5 Celeribacter 1 0 13 1289 1397108 1 0 Celeribacter marinus species species 1 0 Celeribacter indicus 1208324 1146 1411902 1209 species 0 Celeribacter manganoxidans 1 633 1758178 1 Celeribacter ethanolicus 0 species 4 19 0 Labrenzia 1 genus 1372 478070 187304 495 species 1 Labrenzia aggregata 0 2 0 no rank 858 2648686 2021862 342 species 0 Labrenzia sp. VG12 1 0 Labrenzia sp. CP4 1 species 516 1674922 1579315 3498 genus 0 1 0 Halocynthiibacter arcticus 1 species 3498 1579316 1206 1609958 1 Confluentimicrobium 2 0 2 genus no rank 1 0 2643318 1204 1204 1609966 1 0 Confluentimicrobium sp. EMB200-NS6 species genus 1 0 191028 1160 species 1 Leisingera methylohalidivorans 0 133924 1160 82117 2496 no rank 7 0 2 0 clade 1100 62654 767891 1100 genus 2 3 0 Candidatus Puniceispirillum 1 species Candidatus Puniceispirillum marinum 0 1 767892 1097 genus 1 Polymorphum 21 0 2 991903 548 1 Polymorphum gilvum 0 species 527 991904 1 Phreatobacter 14 0 2 genus 634 1632780 620 1868589 Phreatobacter sp. S-12 0 1 species 214 213485 0 1 genus 349221 214 species 1 Micavibrio aeruginosavorus 0 order 1 Rhodospirillales 276 0 63 204441 26101 41295 14997 family 29 1 Rhodospirillaceae 88 0 1543705 568 genus Nitrospirillum 1 0 7 2 28077 561 species Nitrospirillum amazonense 0 1 13134 2589 genus Magnetospirillum 1 0 21 5 84159 929 species 1 0 Magnetospirillum magneticum 599 55518 0 Magnetospirillum gryphiswaldense 1 species 2 0 no rank 1040 2617991 1663591 531 species 1 Magnetospirillum sp. XM-1 0 1639348 509 species 1 Magnetospirillum sp. ME-1 0 genus 2 1 Magnetospira 0 7 1182780 298 1 0 no rank 291 2685734 species 1 Magnetospira sp. QH-2 0 1288970 291 307 1612157 9 0 1 Pararhodospirillum 2 genus species 0 Pararhodospirillum photometricum 1 1084 298 171436 621 genus 1 Tistrella 0 1 2 620 171437 1 0 Tistrella mobilis species genus 12 0 Thalassospira 1 3 168934 870 220697 427 species 1 0 Thalassospira xiamenensis 2048283 431 species 1 Thalassospira sp. CSC3H3 0 191 4527 genus 0 56 Azospirillum 1 5 417 1226968 1 0 Azospirillum humicireducens species 528244 1175 species Azospirillum thiophilum 0 1 1 0 Azospirillum brasilense species 1457 192 species 0 Azospirillum lipoferum 1 193 1422 3671 1263978 0 5 Candidatus Endolissoclinum 1 2 genus 3666 1263979 1 0 Candidatus Endolissoclinum faulkneri species 1804663 158 genus 1 0 Haematospirillum jordaniae 0 1 species 158 1549855 0 1 genus 378 1543704 species 1 0 Niveispirillum cyanobacteriorum 1612173 378 0 5 Rhodospirillum 1 3 genus 922 1081 34018 535 species Rhodospirillum centenum 0 1 382 1085 1 Rhodospirillum rubrum 0 species 1 Acetobacteraceae 0 36 33 family 10828 433 4248 434 33 0 1 Acetobacter 8 genus 673 1076596 0 Acetobacter persici 1 species 1633874 251 species 1 Acetobacter oryzifermentans 0 65959 218 species Acetobacter pomorum 0 1 1 Acetobacter senegalensis 0 species 305 446692 species Acetobacter tropicalis 0 1 104102 1387 species 1 Acetobacter pasteurianus 0 438 1204 151157 177 subgenus 0 1 species 1 0 Acetobacter aceti 435 177 153497 224 genus 1 0 1 Kozakia baliensis 0 species 224 153496 91914 168 genus 2 Asaia 1 0 1 91915 167 species Asaia bogorensis 0 1 899 522 0 12 Acidiphilium 1 3 genus 447 62140 0 Acidiphilium multivorum 1 species 1 0 Acidiphilium cryptum species 440 524 1909 1434011 1 Komagataeibacter 35 0 5 genus 1 Komagataeibacter medellinensis 0 species 553 1177712 221 33995 Komagataeibacter europaeus 0 1 species 0 Komagataeibacter nataicola 1 species 683 265960 417 28448 1 Komagataeibacter xylinus 0 species genus 0 1 Neoasaia 1 2 320496 174 species 1 0 Neoasaia chiangmaiensis 320497 173 1245 125216 3 1 Roseomonas 15 0 genus 1 0 no rank 648 2617492 648 2018065 0 Roseomonas sp. FDAARGOS_362 1 species 257708 582 species 1 0 Roseomonas gilardii 89583 400 genus 5 0 Gluconacetobacter 1 2 1 0 Gluconacetobacter diazotrophicus species 395 33996 1 0 genus 290 1602345 290 1510841 0 Parasaccharibacter apium 1 species genus Granulibacter 1 0 7 2 364409 623 364410 616 species 0 Granulibacter bethesdensis 1 441 612 genus 3 Gluconobacter 1 0 6 species Gluconobacter oxydans 0 1 442 463 143 318683 1 Gluconobacter albidus 0 species 2800059 227 order 2 0 2 0 family 227 2800061 genus 2 0 2 Maricaulis 1 74317 227 74318 225 species Maricaulis maris 0 1 order 3 3 0 Magnetococcales 1 1191478 314 family 1 Magnetococcaceae 0 1 2 1191479 311 genus 0 1 162171 310 Magnetococcus marinus 0 1 species 310 1124597 order 1 Pelagibacterales 0 9 9 54526 275772 271625 1655514 1 Pelagibacteraceae 0 11 6 family genus 3 1 Candidatus Pelagibacter 0 10 198251 248033 no rank 1 0 2647897 11167 1002672 11167 species 0 Candidatus Pelagibacter sp. IMCC9063 1 236856 198252 Candidatus Pelagibacter ubique 0 1 species 2 0 no rank 23581 1655516 alpha proteobacterium HIMB5 0 1 species 22348 859653 species 1 0 alpha proteobacterium HIMB59 744985 1233 genus 7 0 Candidatus Fonsibacter 1 2 2045213 4138 species 0 Candidatus Fonsibacter ubiquis 1 1925548 4131 942 1921002 Holosporales 1 0 1 4 order 2100208 357 family 1 0 1509243 357 genus 0 1 357 1509244 0 Candidatus Nucleicultrix amoebiphila 1 species 1777752 252 family 0 1 1521255 252 genus 1 0 252 91604 Candidatus Paracaedibacter acanthamoebae 0 1 species 44746 332 family 0 1 204454 332 no rank 0 1 endosymbiont of Acanthamoeba sp. UWC8 0 1 species 332 86106 2047 1807140 0 6 class Acidithiobacillales 1 0 40 6 order 2047 225057 family 5 Acidithiobacillaceae 1 20 0 225058 2007 119977 1987 genus 4 1 0 Acidithiobacillus 1 1 Acidithiobacillus caldus 0 species 977 33059 605 160808 1 Acidithiobacillus ferrivorans 0 species 0 Acidithiobacillus ferrooxidans 1 species 404 920 Betaproteobacteria 1 106 0 342 class 233872 28216 6895 32003 41 Nitrosomonadales 1 31 0 order family 1 Nitrosomonadaceae 0 8 11 206379 2802 2292 914 Nitrosomonas 1 3 0 7 genus 197 915 1 0 Nitrosomonas europaea species 916 294 species Nitrosomonas eutropha 0 1 921 2609265 0 2 no rank species 1 0 Nitrosomonas sp. AL212 153948 666 1 Nitrosomonas sp. Is79A3 0 species 255 261292 0 Nitrosomonas communis 1 species 351 44574 species Nitrosomonas ureae 0 1 44577 526 3 0 genus 502 35798 species 1 Nitrosospira briensis 0 35799 125 species Nitrosospira lacus 0 1 1288494 273 species 0 Nitrosospira multiformis 1 1231 104 0 3 Thiobacillaceae 1 2 family 247 2008790 244 919 1 0 genus 244 36861 1 0 Thiobacillus denitrificans species 442 2772226 0 3 family 935200 264 genus 1 0 264 649841 0 Sulfuricella denitrificans 1 species 1778653 178 genus 2 Sulfuriferula 1 0 1 2637784 177 no rank 0 1 1985873 177 species 1 Sulfuriferula sp. AH1 0 32011 2250 family 14 15 0 Methylophilaceae 1 1679002 651 genus 1 0 1 Candidatus Methylopumilus 3 1581557 381 species 0 Candidatus Methylopumilus planktonicus 1 1581680 269 species Candidatus Methylopumilus turicensis 0 1 Methylophilus 1 0 4 2 genus 217 16 no rank 1 0 2630143 213 213 1662285 1 Methylophilus sp. TWE2 0 species 174 404 2 Methylobacillus 1 0 1 genus species 1 0 Methylobacillus flagellatus 405 173 Methylotenera 1 5 0 3 genus 828 359407 species 1 0 Methylotenera mobilis 359408 264 1055487 559 species 0 Methylotenera versatilis 1 365 81682 2 0 Methylovorus 1 3 genus 2634027 167 no rank 1 0 species 1 0 Methylovorus sp. MP688 887061 167 0 Methylovorus glucosotrophus 1 species 196 266009 90627 635 family 5 1 Gallionellaceae 5 0 1 Gallionella 1 0 2 genus 355 96 species Gallionella capsiferriformans 0 1 370405 354 genus 1 Sideroxydans 3 0 2 314343 275 0 Sideroxydans lithotrophicus 1 species 272 63745 5 1 Sterolibacteriaceae 12 0 family 488 2008793 1054211 241 genus 2 7 0 1 Sulfuritalea 748811 234 species 1 Sulfuritalea hydrogenivorans 0 genus 1 Methyloversatilis 0 2 2 378210 235 no rank 1 0 2639971 233 1 Methyloversatilis sp. RAC08 0 species 233 1842540 0 54 1 Neisseriales 36 order 8345 206351 Chromobacteriaceae 1 27 0 13 family 3798 1499392 genus Pseudogulbenkiania 1 2 0 2 568394 395 no rank 1 0 2642558 393 species 1 Pseudogulbenkiania sp. NH8B 0 748280 393 290 187 2 1 Aquaspirillum 0 3 genus no rank 1 0 2620219 287 287 1938604 1 0 Aquaspirillum sp. LM1 species genus 2 8 0 Laribacter 1 168470 284 168471 276 species 1 Laribacter hongkongensis 0 genus 2 17 0 Jeongeupia 1 885864 458 no rank 0 1 2619593 441 1906741 441 species Jeongeupia sp. USM3 0 1 90153 2344 no rank 0 4 535 2344 genus 4 16 0 Chromobacterium 1 1 Chromobacterium violaceum 0 species 609 536 1 0 Chromobacterium vaccinii species 999 1108595 0 1 no rank 720 2641838 1 0 Chromobacterium sp. ATCC 53434 species 720 2059672 481 4493 family 0 16 1 Neisseriaceae 22 0 1 genus 219 538 1 0 Eikenella corrodens species 219 539 1193515 424 genus 0 2 Snodgrassella 1 2 422 1196083 0 Snodgrassella alvi 1 species genus 3 0 7 1 Vitreoscilla 59 692 species Vitreoscilla filiformis 0 1 63 303 382 2627922 1 0 no rank 96942 382 species Vitreoscilla sp. C1 0 1 260 71 1 0 1 Simonsiella 2 genus 72 259 species 1 Simonsiella muelleri 0 308 421605 0 1 no rank 0 Neisseriaceae bacterium DSM 100970 1 species 308 2052837 482 2574 genus 12 Neisseria 1 0 13 2623750 333 no rank 2 0 128 1853276 1 0 Neisseria sp. 10022 species 655307 205 species 1 Neisseria sp. KEM232 0 species 0 Neisseria meningitidis 1 487 978 122 488 1 0 Neisseria mucosa species Neisseria weaveri 0 1 species 167 28091 species 0 Neisseria gonorrhoeae 1 485 248 0 Neisseria lactamica 1 species 158 486 1853278 99 species 0 Neisseria sp. 10023 1 Neisseria elongata 0 1 species 150 495 species Neisseria sicca 0 1 490 128 1 Neisseria zoodegmatis 0 species 178 326523 order 21 0 24 Rhodocyclales 1 206389 5881 2008794 4515 family 58 0 Zoogloeaceae 1 12 2173 33057 Thauera 1 0 46 6 genus 1134435 344 species 1 Thauera humireducens 0 species 0 Thauera aromatica 1 59405 434 no rank 0 2 2609274 962 1 0 Thauera sp. MZ1T species 426 85643 2005884 536 species 0 Thauera sp. K11 1 0 Thauera chlorobenzoica 1 species 387 96773 genus 5 16 0 Azoarcus 1 12960 2284 440 2067960 1 0 Azoarcus sp. SY39 species Azoarcus olearius 0 1 species 397 418699 1431 2629479 2 0 no rank 925 198107 Azoarcus sp. CIB 0 1 species species 1 0 Azoarcus sp. KH32C 748247 506 family 0 2 2008795 236 Dechloromonas 1 7 0 2 genus 236 73029 1 Dechloromonas aromatica 0 species 229 259537 family 6 7 0 1 Rhodocyclaceae 75787 1106 1 0 no rank 184 75788 1898103 184 species 1 0 Rhodocyclaceae bacterium 347 146937 2 2 0 1 Azospira genus 345 146939 1 Azospira oryzae 0 species 568 551759 2 1 Aromatoleum 10 0 genus species Aromatoleum aromaticum 0 1 551760 558 80840 209573 order 230 1515 0 1 Burkholderiales no rank 0 2 80841 375 species Burkholderiales bacterium GJ-E10 0 1 1469502 279 1 Burkholderiales bacterium YL45 0 species 96 1834205 no rank 17 0 224471 8607 889 318147 Paucibacter 1 14 0 2 genus 2642959 875 no rank 0 1 species 0 Paucibacter sp. KCTC 42545 1 1768242 875 1069 65047 Mitsuaria 1 0 11 2 genus 1058 2648776 0 1 no rank species 1 Mitsuaria sp. 7 0 1658665 1058 2 Methylibium 1 17 0 genus 602 316612 species 1 Methylibium petroleiphilum 0 105560 585 212743 735 genus 14 0 1 Rhizobacter 2 species 1 0 Rhizobacter gummiphilus 946333 721 7 0 Leptothrix 1 2 genus 651 88 0 Leptothrix cholodnii 1 species 644 34029 0 4 1 Thiomonas 2 genus 569 32012 1 0 Thiomonas intermedia species 565 926 28067 777 genus 2 1 Rubrivivax 19 0 28068 758 species 1 Rubrivivax gelatinosus 0 1532 413882 1 0 [Polyangium] brachysporum species genus 2 0 5 1 Roseateles 93681 1783 76731 1778 species Roseateles depolymerans 0 1 19431 506 Alcaligenaceae 1 0 58 43 family 156 90243 Oligella 1 1 0 2 genus species 1 Oligella urethralis 0 90245 155 1472344 288 genus 0 1 species Basilea psittacipulmonis 0 1 1472345 288 111 0 1 Bordetella 17 genus 7417 517 502 1416806 1 Bordetella genomosp. 8 0 species 518 1086 species Bordetella bronchiseptica 0 1 Bordetella parapertussis 0 1 species 549 519 Bordetella holmesii 0 1 species 299 35814 species 1 Bordetella petrii 0 94624 331 520 565 species 0 Bordetella pertussis 1 406 463014 1 0 Bordetella flabilis species 377 1331258 1 0 Bordetella pseudohinzii species species 1 0 Bordetella avium 521 210 363 1416803 Bordetella genomosp. 9 0 1 species species Bordetella trematum 0 1 123899 278 457 463025 0 Bordetella bronchialis 1 species 463040 593 species Bordetella genomosp. 13 0 1 378 103855 0 Bordetella hinzii 1 species 2630031 373 no rank 1 0 species 0 Bordetella sp. H567 1 1697043 373 species Bordetella genomosp. 6 0 1 463024 539 genus 3 6 0 Advenella 1 290425 529 0 Advenella kashmirensis 1 species 190 310575 302406 333 species Advenella mimigardefordensis 0 1 359336 357 genus 2 0 Castellaniella 1 2 355 75697 Castellaniella defragrans 0 1 species 29574 768 genus 4 0 1 Taylorella 3 species 0 Taylorella asinigenitalis 1 84590 403 species 0 Taylorella equigenitalis 1 29575 361 genus 19 0 Alcaligenes 1 2 507 3605 0 Alcaligenes faecalis 1 species 3586 511 385 1921582 1 Orrella 3 0 2 genus species 1 0 Orrella dioscoreae 1851544 382 222 5340 genus 6 81 0 1 Achromobacter 491 2626865 0 1 no rank 1758194 491 species Achromobacter sp. AONIH1 0 1 1 Achromobacter insolitus 0 species 433 217204 32002 1149 species 1 Achromobacter denitrificans 0 species 0 Achromobacter xylosoxidans 1 85698 2267 217203 919 species 1 Achromobacter spanius 0 genus Pusillimonas 1 0 3 2 305976 273 2640016 270 no rank 0 1 1007105 270 species 1 Pusillimonas sp. T7-7 0 0 2 Paenalcaligenes 1 2 genus 255 1100891 species 1 Paenalcaligenes hominis 0 643674 253 56 1 Comamonadaceae 0 183 family 41357 80864 4724 12916 9 1 Acidovorax 60 0 genus 2684926 2395 no rank 4 0 species 0 Acidovorax sp. T1 1 1858609 1078 419 232721 0 Acidovorax sp. JS42 1 species species 0 Acidovorax sp. RAC01 1 1842533 442 0 Acidovorax sp. KKS102 1 species 456 358220 80869 645 species 0 Acidovorax citrulli 1 species 0 Acidovorax ebreus 1 721785 455 80867 897 species 1 0 Acidovorax avenae species Acidovorax sp. NA3 0 1 553814 272 7760 52972 6 0 Polaromonas 1 3 genus 1 Polaromonas naphthalenivorans 0 species 1205 216465 2638319 6549 no rank 0 1 6549 296591 Polaromonas sp. JS666 0 1 species 6 0 Comamonas 1 4 genus 3259 283 998 225992 Comamonas kerstersii 0 1 species 1 Comamonas serinivorans 0 species 1415 1082851 285 840 species 0 Comamonas testosteroni 1 628 1436289 1 0 genus 628 1436290 0 Candidatus Symbiobacter mobilis 1 species 3052 364316 2 0 2 1 Verminephrobacter genus 3050 364317 Verminephrobacter eiseniae 0 1 species 1 0 genus 384 2678886 1 0 Melaminivora sp. SC2-7 species 384 2116657 genus 1 Delftia 0 48 5 80865 4489 species 1 0 Delftia acidovorans 80866 875 958 180282 0 Delftia tsuruhatensis 1 species 2 0 no rank 2608 2613839 742013 1698 species 1 Delftia sp. Cs1-4 0 species Delftia sp. HK171 0 1 1920191 910 genus 0 1 238749 392 0 Diaphorobacter polyhydroxybutyrativorans 1 species 392 1546149 genus 0 1 352450 497 497 2109915 1 Simplicispira sp. SC1-8 0 species genus 3 7 0 Ottowia 1 219181 955 no rank 0 1 2645081 293 species 0 Ottowia sp. oral taxon 894 1 1658672 293 2109914 655 species 1 0 Ottowia sp. KADR8-3 7 0 1 Rhodoferax 5 genus 1870 28065 0 Rhodoferax antarcticus 1 species 400 81479 1 0 Rhodoferax koreense species 861 1842727 species 0 Rhodoferax ferrireducens 1 192843 368 234 1484693 1 0 Rhodoferax saidenbachensis species 1649468 452 genus 2 Melaminivora 1 0 9 no rank 1 0 2641902 443 2109913 443 species 1 0 Melaminivora sp. SC2-9 201096 588 genus 2 Alicycliphilus 1 0 5 583 179636 1 Alicycliphilus denitrificans 0 species genus 0 1 Limnohabitans 1 3 665874 460 459 2626134 0 2 no rank 1678128 271 species 0 Limnohabitans sp. 63ED37-2 1 1 Limnohabitans sp. 103DPR2 0 species 188 1678129 1066 174951 2 1 Ramlibacter 0 4 genus 94132 1062 species Ramlibacter tataouinensis 0 1 2 0 genus 851 2490452 0 Comamonadaceae bacterium B1 1 species 439 1458426 1458425 412 species 1 0 Comamonadaceae bacterium A1 4 10 0 1 Hydrogenophaga genus 1606 47420 2 0 no rank 1032 2610897 1842537 393 species 1 Hydrogenophaga sp. RAC07 0 0 Hydrogenophaga sp. PBC 1 species 639 795665 1763535 564 species 1 Hydrogenophaga crassostreae 0 5 44 0 1 Variovorax genus 8141 34072 no rank 2 0 663243 2157 1795631 1061 species Variovorax sp. PAMC 28711 0 1 0 Variovorax sp. PMC12 1 species 1096 2126319 34073 5071 species Variovorax paradoxus 0 1 436515 869 species Variovorax boronicumulans 0 1 27 1 Oxalobacteraceae 0 75 family 14642 75682 genus 6 0 40 Massilia 1 149698 3268 0 2 no rank 1214 2609279 727 1707785 0 Massilia sp. WG5 1 species species 0 Massilia sp. NR 4-1 1 1678028 487 644 2045208 1 0 Massilia sp. B2 species 666 1141883 1 Massilia putida 0 species 2072590 704 species 1 Massilia sp. ZMN-3 0 202907 1894 genus 4 15 0 1 Collimonas 279058 778 species 1 Collimonas arenae 0 595 158899 Collimonas fungivorans 0 1 species species 0 Collimonas pratensis 1 279113 506 963 5621 genus 0 30 Herbaspirillum 1 6 2624150 556 no rank 0 1 556 2025949 1 Herbaspirillum sp. meg3 0 species 1 Herbaspirillum seropedicae 0 species 2708 964 1 0 Herbaspirillum frisingense species 660 92645 Herbaspirillum rubrisubalbicans 0 1 species 574 80842 Herbaspirillum hiltneri 0 1 species 1093 341045 175 846 0 1 genus 175 847 1 0 Oxalobacter formigenes species Janthinobacterium 1 9 0 7 genus 3172 29580 2610881 1818 no rank 4 0 1236179 357 species 1 0 Janthinobacterium sp. B9-8 species 1 0 Janthinobacterium sp. Marseille 375286 173 species Janthinobacterium sp. 1_2014MBL_MicDiv 0 1 1644131 717 571 1938606 Janthinobacterium sp. LM6 0 1 species 812 368607 Janthinobacterium svalbardensis 0 1 species species Janthinobacterium agaricidamnosum 0 1 55508 533 genus 0 2 303379 437 species 0 Herminiimonas arsenicoxydans 1 204773 181 1809410 256 species 1 Herminiimonas arsenitoxidans 0 119060 123646 family Burkholderiaceae 1 0 335 84 genus 0 1 2571159 352 1 Paraburkholderia rhizoxinica 0 species 352 412963 1 Burkholderia 1236 0 41 genus 78747 32008 28095 1778 species Burkholderia gladioli 0 1 19 0 species group 29195 87882 species Burkholderia pyrrocinia 0 1 60550 674 702 488729 Burkholderia metallica 0 1 species 0 Burkholderia contaminans 1 species 1095 488447 488446 1093 species Burkholderia latens 0 1 1503055 732 species 0 Burkholderia territorii 1 3499 292 1 Burkholderia cepacia 0 species 1 0 Burkholderia ambifaria species 993 152480 0 Burkholderia diffusa 1 species 664 488732 species 0 Burkholderia pseudomultivorans 1 1207504 568 Burkholderia lata 0 1 species 4602 482957 1 Burkholderia stagnalis 0 species 739 1503054 1283 95485 Burkholderia stabilis 0 1 species Burkholderia dolosa 0 1 species 559 152500 60552 1708 species Burkholderia vietnamiensis 0 1 3143 95486 1 0 Burkholderia cenocepacia species 265293 573 species 1 [Pseudomonas] mesoacidophila 0 species 1 Burkholderia seminalis 0 488731 2951 101571 2250 species Burkholderia ubonensis 0 1 1367 87883 1 Burkholderia multivorans 0 species 11 0 no rank 7351 2613784 0 Burkholderia sp. Bp7605 1 species 432 1740163 species 1 Burkholderia sp. PAMC 28687 0 1795874 321 Burkholderia sp. RPE67 0 1 species 737 758796 732 1740162 Burkholderia sp. Bp5365 0 1 species 1 Burkholderia sp. CCGE1003 0 species 931 640512 907 640510 0 Burkholderia sp. CCGE1001 1 species 1 0 Burkholderia sp. HB1 species 755 1678678 0 Burkholderia sp. KJ006 1 species 630 416344 325 1795043 Burkholderia sp. PAMC 26561 0 1 species 704 1468409 Burkholderia sp. 2002721687 0 1 species species 1 Burkholderia sp. YI23 0 1097668 877 41899 910 species Burkholderia plantarii 0 1 1918 337 Burkholderia glumae 0 1 species 0 7 species group 36359 111527 0 Burkholderia oklahomensis 1 species 1556 342113 7939 13373 0 Burkholderia mallei 1 species Burkholderia sp. MSMB617WGS 0 1 species 1849 1637831 1637837 1707 species 0 Burkholderia sp. MSMB0266 1 species 1 0 Burkholderia pseudomallei 28450 18687 species 0 Burkholderia thailandensis 1 57975 2719 1902 1637841 1 Burkholderia sp. MSMB0852 0 species 1028 44013 4 Polynucleobacter 1 0 32 genus 432 576611 1 Polynucleobacter asymbioticus 0 species 301 1835254 0 Polynucleobacter duraquae 1 species 1 0 Polynucleobacter necessarius species 263 576610 1827195 804 genus 0 1 804 758793 Burkholderia sp. RPE64 0 1 species 6618 48736 Ralstonia 1 42 0 5 genus Ralstonia insidiosa 0 1 species 586 190721 1096 105219 Ralstonia mannitolilytica 0 1 species 329 1034 species 1 0 Ralstonia pickettii 305 3860 species 1 0 Ralstonia solanacearum 10480 93217 10 1 Pandoraea 0 31 genus species 1 Pandoraea oxalativorans 0 573737 820 93219 1980 species Pandoraea norimbergensis 0 1 656179 493 species Pandoraea faecigallinarum 0 1 species 1 0 Pandoraea pnomenusa 93220 1384 445709 544 species 1 0 Pandoraea thiooxydans species 1 0 Pandoraea vervacti 656178 564 343 93222 1 Pandoraea sputorum 0 species 1 Pandoraea apista 0 species 595 93218 3726 93221 1 0 Pandoraea pulmonicola species 106589 15202 genus 129 0 1 Cupriavidus 9 2 0 no rank 3545 2640874 1696 876364 1 Cupriavidus sp. USMAA2-4 0 species 1849 1389192 0 Cupriavidus sp. USMAHM13 1 species 1348 106590 1 Cupriavidus necator 0 species species 1 0 Cupriavidus gilardii 82541 735 0 Cupriavidus pinatubonensis 1 species 757 248026 1 0 Cupriavidus basilensis species 3726 68895 119219 3456 species 1 0 Cupriavidus metallidurans 0 Cupriavidus sp. USMAA1020 1 species 1506 367825 1822464 10080 genus 1 Paraburkholderia 0 112 12 1 0 Paraburkholderia phytofirmans species 1177 261302 625 2026199 1 Paraburkholderia aromaticivorans 0 species 1963 75105 Paraburkholderia caribensis 0 1 species 948107 755 species 0 Paraburkholderia sprentiae 1 604 134537 1 0 Paraburkholderia fungorum species 2615204 1144 no rank 0 1 1926494 1144 species 1 0 Paraburkholderia sp. SOS3 148447 666 species 1 0 Paraburkholderia phymatum species 1 Paraburkholderia hospita 0 169430 813 Paraburkholderia terrae 0 1 species 527 311230 36873 1022 species 1 Paraburkholderia xenovorans 0 672 252970 1 Paraburkholderia phenoliruptrix 0 species 2 0 no rank 766 33809 species beta proteobacterium CB 0 1 543913 289 477 1904640 0 Betaproteobacteria bacterium GR16-43 1 species 2306 119066 0 11 no rank genus 0 1 1301080 88 1160784 88 species Candidatus Nasuia deltocephalinicola 0 1 2 Candidatus Accumulibacter 1 9 0 genus 440 327159 1 Candidatus Accumulibacter phosphatis 0 species 431 327160 189384 16 genus 1 0 16 189385 1 0 Candidatus Tremblaya princeps species 248 1381133 1 0 genus 669502 248 species 1 0 Candidatus Profftella armatura 1 Kinetoplastibacterium 9 0 6 genus 1514 33055 33056 375 species 1 0 Candidatus Kinetoplastibacterium crithidii 1 0 Candidatus Kinetoplastibacterium desouzaii species 369 994692 994696 258 species 1 Candidatus Kinetoplastibacterium oncopeltii 0 species 0 Kinetoplastibacterium blastocrithidii 1 233181 255 994695 248 species 0 Candidatus Kinetoplastibacterium galatii 1 class 5 0 580370 278 278 580371 5 1 Mariprofundales 0 9 order 1 0 1 Mariprofundaceae 4 family 269 580372 genus 3 2 0 Mariprofundus 1 377315 268 105 1921087 1 Mariprofundus ferrinatatus 0 species 161 1921086 1 0 Mariprofundus aestuarium species 74021 68525 0 181 subphylum 29547 23885 class 69 1 Epsilonproteobacteria 11 0 235899 852 order Nautiliales 1 0 2 3 0 1 family 139 2795691 1 0 genus 139 269258 139 2624044 0 1 no rank 387092 139 species 0 Nitratiruptor sp. SB155-2 1 1 0 family 711 224467 711 191291 0 1 genus 244787 711 species 0 Nautilia profundicola 1 23022 213849 Campylobacterales 1 35 0 65 order family 1 Helicobacteraceae 0 5 14 72293 6034 12 1 Helicobacter 8 0 genus 5955 209 1 Helicobacter hepaticus 0 species 159 32025 129 1591088 0 Helicobacter himalayensis 1 species 138563 372 species Helicobacter cetorum 0 1 Helicobacter pylori 0 1 species 4126 210 212 173 species 1 Helicobacter acinonychis 0 1 0 Helicobacter felis species 105 214 species 0 Helicobacter mustelae 1 217 152 2593540 140 no rank 1 0 1 0 Helicobacter sp. MIT 01-6242 species 140 222136 37372 201 species 1 0 Helicobacter bilis 213 184 species 0 Helicobacter cinaedi 1 76936 206 species 0 Helicobacter typhlonius 1 genus 0 1 843 74 844 74 species 1 Wolinella succinogenes 0 734 2771471 0 4 family 202746 611 genus 1 Sulfurimonas 2 0 3 species 0 Sulfurimonas denitrificans 1 39766 344 265 202747 0 Sulfurimonas autotrophica 1 species 123 286130 0 1 genus 123 148813 1 Sulfuricurvum kujiense 0 species 72294 15083 family 0 31 1 Campylobacteraceae 41 no rank 0 5 2321108 3708 1898 28196 3 1 Arcobacter 8 0 genus 773 28199 1 Arcobacter nitrofigilis 0 species species 0 Arcobacter butzleri 1 28197 1117 2321187 903 genus 1 0 species 0 Arcobacter sp. LPB0137 1 1850254 903 907 2321207 0 1 no rank 907 944547 0 Arcobacter sp. L 1 species 1409 57665 9 1 Sulfurospirillum 0 22 genus Sulfurospirillum deleyianum 0 1 species 145 65553 species 0 Sulfurospirillum multivorans 1 66821 139 1 0 Sulfurospirillum cavolei species 105 366522 no rank 0 3 2618290 671 1986224 161 species 1 0 Sulfurospirillum sp. SL2-1 252 1581011 1 Sulfurospirillum sp. UCH001 0 species 220622 258 species Sulfurospirillum sp. JPD-1 0 1 194424 131 species 1 0 Sulfurospirillum halorespirans species 1 Sulfurospirillum barnesii 0 44674 196 genus 26 0 89 1 Campylobacter 194 9935 198 376 species 0 Campylobacter hyointestinalis 1 206 582 species 0 Campylobacter sputorum 1 species 1 Campylobacter concisus 0 199 353 species 1 0 Campylobacter jejuni 197 935 1 0 Campylobacter volucris species 310 1031542 299 824 Campylobacter gracilis 0 1 species 400 827 Campylobacter ureolyticus 0 1 species 579 195 0 Campylobacter coli 1 species species 1 0 Campylobacter helveticus 28898 213 374106 293 species 1 0 Campylobacter cuniculorum 1 0 Campylobacter subantarcticus species 427 497724 346 488546 0 Campylobacter peloridis 1 species 185 75658 1 0 Campylobacter lanienae species 1 Campylobacter insulaenigrae 0 species 396 260714 0 4 no rank 1152 2593542 species 1 0 Campylobacter sp. RM6137 1660073 177 241 1660076 0 Campylobacter sp. RM12175 1 species Campylobacter sp. RM8964 0 1 species 265 1660074 species 1 0 Campylobacter sp. RM16704 1500960 469 522485 273 species 1 Campylobacter avium 0 98 200 1 Campylobacter curvus 0 species 261 1244531 Campylobacter iguaniorum 0 1 species species 1 Campylobacter lari 0 201 1025 species 1 Campylobacter fetus 0 196 394 219 76517 1 Campylobacter hominis 0 species 730 1965231 1 Campylobacter pinnipediorum 0 species 5 0 family 1136 2771472 269260 572 genus 1 Nitratifractor 0 1 2 species 1 Nitratifractor salsuginis 0 269261 571 564 265570 3 Sulfurovum 1 1 0 genus 1 0 no rank 210 2646778 species Sulfurovum sp. NBC37-1 0 1 387093 210 species Sulfurovum lithotrophicum 0 1 206403 353 50136 28221 112 0 24 1 Deltaproteobacteria class order 24 Desulfuromonadales 1 0 32 69541 6259 4255 213422 0 13 1 Geobacteraceae 14 family 2 0 5 Geoalkalibacter 1 genus 250 392332 245 483547 1 0 Geoalkalibacter subterraneus species 3992 28231 11 30 0 1 Geobacter genus Geobacter metallireducens 0 1 species 352 28232 species 1 Geobacter uraniireducens 0 351604 1514 1 0 Geobacter sulfurreducens species 180 35554 313985 188 species 1 Geobacter lovleyi 0 species 1 Geobacter anodireducens 0 1340425 158 345632 197 species 1 Geobacter pickeringii 0 292 1203471 0 Geobacter daltonii 1 species 2627627 783 no rank 2 0 297 443144 1 Geobacter sp. M21 0 species 0 Geobacter sp. M18 1 species 486 443143 298 225194 0 Geobacter bemidjiensis 1 species family 9 6 0 1 Desulfuromonadaceae 213421 1972 874 18 4 0 1 Pelobacter 5 genus no rank 1 0 2620299 151 0 Pelobacter sp. SFB93 1 species 151 1842532 1 0 Pelobacter carbinolicus species 272 19 29543 194 species 0 Pelobacter propionicus 1 29542 253 species 1 0 Pelobacter acetylenicus genus Desulfuromonas 1 0 26 3 890 1092 1603606 792 species 1 Desulfuromonas soudanensis 0 2614637 274 no rank 0 1 1823759 274 species Desulfuromonas sp. DDH964 0 1 order 3 0 1 1 Desulfarculales 453227 370 369 453228 2 0 family 2 0 1 1 Desulfarculus genus 369 453229 453230 368 species 1 Desulfarculus baarsii 0 1 Myxococcales 0 366 36 order 32537 29 18712 80811 24 0 suborder 8 1 Archangiaceae 0 24 family 7354 39 0 1 genus 830 40 species 1 0 Stigmatella aurantiaca 41 830 genus 2 1 0 Archangium 1 47 4187 species 0 Archangium gephyra 1 48 4186 2 2 0 1 Cystobacter genus 1305 42 43 1303 species 1 0 Cystobacter fuscus 44 1008 genus 2 1 Melittangium 0 5 83453 1003 species 0 Melittangium boletus 1 family 2 0 1 Vulgatibacteraceae 1 1524213 501 genus 0 1 1524214 500 1391653 500 species 0 Vulgatibacter incomptus 1 family 13 0 Myxococcaceae 1 9 31 7817 1 Myxococcus 0 48 5 genus 5310 32 species 1 0 Myxococcus fulvus 33 2203 34 904 species 0 Myxococcus xanthus 1 species 0 Myxococcus hansupus 1 1297742 1068 species Myxococcus stipitatus 0 1 83455 1087 83461 2494 genus 3 Corallococcus 1 0 3 35 1055 species 1 0 Myxococcus macrosporus 1436 184914 1 0 Corallococcus coralloides species 1524215 3040 family 5 1 Anaeromyxobacteraceae 9 0 Anaeromyxobacter 1 0 18 4 genus 3031 161492 no rank 2 0 2620896 1703 species 1 0 Anaeromyxobacter sp. Fw109-5 404589 916 787 447217 0 Anaeromyxobacter sp. K 1 species 0 Anaeromyxobacter dehalogenans 1 species 1310 161493 2994 224462 0 3 suborder 2994 224464 3 0 17 Kofleriaceae 1 family 2 1 Haliangium 0 10 genus 2977 162027 species 0 Haliangium ochraceum 1 80816 2967 suborder 0 8 80812 10465 family 24 0 1 Polyangiaceae 5 49 9009 2 Chondromyces 1 0 3 genus 1672 50 52 1669 species Chondromyces crocatus 0 1 39643 7313 genus 11 0 1 Sorangium 2 7302 56 Sorangium cellulosum 0 1 species 3 0 5 Sandaracinaceae 1 family 1456 1055686 1451 1055688 Sandaracinus 1 0 5 2 genus species 1 0 Sandaracinus amylolyticus 927083 1446 213462 678 order Syntrophobacterales 1 3 0 6 family 0 1 213465 157 157 29526 0 1 genus 119484 157 species 1 Syntrophobacter fumaroxidans 0 0 4 family 518 213468 0 1 genus 68 43773 species 1 0 Syntrophus aciditrophicus 316277 68 2 1 0 Desulfomonile 1 genus 312 2357 species 1 0 Desulfomonile tiedjei 2358 311 138 60892 1 0 genus 60893 138 species 0 Desulfobacca acetoxidans 1 5075 213118 Desulfobacterales 1 0 9 15 order family 1 Desulfobacteraceae 0 20 8 213119 4144 genus 1 Desulfatibacillum 0 3 2 218207 2147 259354 2144 species 1 Desulfatibacillum alkenivorans 0 240 2295 2 1 Desulfobacterium 0 1 genus 239 2296 1 0 Desulfobacterium autotrophicum species 896 594 genus 0 2 0 Desulfococcus multivorans 1 species 201 897 0 Desulfococcus oleovorans 1 species 393 181663 1 0 genus 1143 28222 1 Desulfobacula toluolica 0 species 1143 28223 family 6 1 Desulfobulbaceae 18 0 213121 922 Desulfotalea 1 2 0 2 genus 299 109168 Desulfotalea psychrophila 0 1 species 297 84980 genus 0 1 427922 307 1 0 Desulfurivibrio alkaliphilus species 307 427923 0 1 genus 188 53318 species 0 Desulfocapsa sulfexigens 1 65555 188 110 893 0 1 genus 1986146 110 species 0 Desulfobulbus sp. ORNL 1 order 1 0 1 Desulfurellales 4 213113 567 family 0 3 117942 566 genus 0 1 33001 409 409 33002 Desulfurella acetivorans 0 1 species genus 1 Hippea 1 0 2 84404 157 Hippea maritima 0 1 species 156 84405 order 23 0 42 1 Desulfovibrionales 213115 4626 1 0 family 95 213117 0 1 genus 95 45662 95 45663 1 Desulfohalobium retbaense 0 species 213116 276 family 0 2 Desulfomicrobiaceae 1 4 genus 0 2 Desulfomicrobium 1 3 898 274 0 Desulfomicrobium baculatum 1 species 187 899 species 1 0 Desulfomicrobium orale 132132 85 family Desulfovibrionaceae 1 0 8 17 194924 4213 140 2794998 0 1 genus 140 880 0 Desulfovibrio salexigens 1 species genus 1 0 2582840 348 873 348 species Desulfovibrio africanus 0 1 genus 1 0 41707 285 Lawsonia intracellularis 0 1 species 285 29546 Desulfovibrio 1 0 10 9 genus 2749 872 species 1 0 Desulfovibrio fairfieldensis 44742 195 184917 555 species Desulfovibrio magneticus 0 1 species Desulfovibrio piger 0 1 901 183 881 935 species Desulfovibrio vulgaris 0 1 140 58180 1 Desulfovibrio alaskensis 0 species 1725232 57 species 1 Candidatus Desulfovibrio trichonymphae 0 no rank 1 0 2593640 100 100 631220 1 0 Desulfovibrio sp. G11 species 876 574 species 1 0 Desulfovibrio desulfuricans 2035811 683 genus 1 Pseudodesulfovibrio 0 10 4 182210 284 species 1 Pseudodesulfovibrio aespoeensis 0 species 1 Pseudodesulfovibrio indicus 0 1716143 275 0 Pseudodesulfovibrio profundus 1 species 114 57320 1573 200930 0 8 phylum 68337 1573 class 8 0 2 1 Deferribacteres 191393 1571 order 0 5 Deferribacterales 1 7 191394 1566 family 0 4 1 Deferribacteraceae 6 genus Deferribacter 1 0 1 2 53572 548 Deferribacter desulfuricans 0 1 species 547 197162 433 2351 1 0 genus 2352 433 species 1 0 Flexistipes sinusarabici 0 1 genus 387 545865 species 1 0 Calditerrivibrio nitroreducens 477976 387 194 117999 0 1 genus 1 0 Denitrovibrio acetiphilus species 194 118000 0 3 phylum 295 1930617 1962850 295 class 3 0 order 3 4 0 Calditrichales 1 1962852 295 291 1962854 0 4 1 Calditrichaceae 2 family 1 0 genus 287 187144 287 187145 Caldithrix abyssi 0 1 species 273 0 superkingdom 61060 2157 1783276 30 clade 1 0 phylum 1 0 1801631 30 1 0 genus 30 2490204 species 0 Candidatus Micrarchaeota archaeon Mia14 1 1920749 30 clade 0 57 1783275 8191 4764 651137 0 14 phylum 651142 281 no rank 0 3 1593364 175 genus 0 1 species Candidatus Nitrosopelagicus brevis 0 1 1410606 175 106 1825023 0 2 genus 58 1846278 Candidatus Nitrosotenuis sp. AQ6f 0 1 species species 1 0 Candidatus Nitrosotenuis cloacae 1603555 48 order 0 1 1 Nitrosopumilales 5 31932 516 4 1 Nitrosopumilaceae 1 0 family 515 338190 1993653 176 genus 0 1 0 Candidatus Nitrosomarinus catalina 1 species 176 1898749 genus 2 0 338191 338 species 1 0 Candidatus Nitrosopumilus sediminis 1229909 161 0 Candidatus Nitrosopumilus adriaticus 1 species 177 1580092 class 0 6 1643678 3967 3 1 Candidatus Nitrosocaldales 2 0 order 2015 1968909 1968910 2013 family 2 Candidatus Nitrosocaldaceae 1 0 1 1 0 genus 2012 498374 2045011 2012 species 0 Candidatus Nitrosocaldus islandicus 1 1952 1033996 3 1 0 Nitrososphaerales 1 order family 2 1 Nitrososphaeraceae 1 0 1033997 1951 0 1 genus 1950 497726 species 1 Nitrososphaera viennensis 0 1034015 1950 28889 3374 phylum 41 0 3374 183924 41 0 3 Thermoprotei 1 class 0 13 order 804 2266 family 2 0 Thermoproteaceae 1 7 2267 603 genus 0 1 2276 42 2277 42 species 1 0 Pyrobaculum islandicum 123 76886 0 1 genus 0 Caldivirga maquilingensis 1 species 123 76887 2 0 genus 305 164450 158 985052 1 Vulcanisaeta moutnovskia 0 species 147 164451 0 Vulcanisaeta distributa 1 species 2270 131 genus 2 0 species Thermoproteus tenax 0 1 2271 54 184117 77 species 0 Thermoproteus uzoniensis 1 201 114378 6 1 Thermofilaceae 0 1 family genus 1 Thermofilum 5 0 5 2268 200 1 Thermofilum carboxyditrophus 0 species 39 1483572 species 0 Thermofilum pendens 1 2269 63 species 1 Thermofilum uzonense 0 1550241 61 32 1365176 1 Thermofilum adornatus 0 species order 1 0 Desulfurococcales 1 16 114380 1385 0 11 family 1086 2272 54258 97 genus 2 0 species Ignicoccus hospitalis 0 1 160233 62 1 0 Ignicoccus islandicus species 35 54259 864 2279 3 0 4 1 Staphylothermus genus 73 84599 0 Staphylothermus hellenicus 1 species species 0 Staphylothermus marinus 1 2280 787 47 477695 4 0 Thermogladius 1 2 genus 43 1200300 1 Thermogladius calderae 0 species 1 0 genus 8 54253 54254 8 species 1 0 Thermosphaera aggregans 2273 70 genus 1 Desulfurococcus 0 1 3 31 2275 1 0 Desulfurococcus mucosus species 1 0 Desulfurococcus amylolyticus species 38 94694 2307 298 family 4 Pyrodictiaceae 1 4 0 0 1 genus 86 54251 54252 86 species 0 Pyrolobus fumarii 1 156 54247 1 0 genus 156 54248 Hyperthermus butylicus 0 1 species genus 1 0 2308 52 1273541 52 species 1 0 Pyrodictium delaneyi order 9 0 2281 1008 1008 118883 Sulfolobaceae 1 6 0 9 family 69655 167 genus 0 1 111955 167 species Sulfolobus tokodaii 0 1 genus 1 0 2100760 139 Sulfolobus solfataricus 0 1 species 139 2287 genus 0 3 2284 505 species 1 Sulfolobus islandicus 0 43080 251 94 2285 1 0 Sulfolobus acidocaldarius species no rank 0 1 2641160 160 1891280 160 species Sulfolobus sp. A20 0 1 41980 101 genus 2 0 species 1 0 Metallosphaera sedula 43687 40 1006005 61 species Metallosphaera cuprina 0 1 12914 90 genus 0 1 species 1 Acidianus hospitalis 0 563177 90 871006 174 order 0 2 120 255472 0 1 family 200414 120 genus 1 0 species Caldisphaera lagunensis 0 1 200415 120 871007 54 family 1 0 genus 0 1 105850 54 1 Acidilobus saccharovorans 0 species 54 242703 2 0 phylum 53 51967 498845 53 genus 2 Candidatus Korarchaeum 1 0 1 52 498846 0 Candidatus Korarchaeum cryptofilum 1 species 52839 28890 0 215 phylum 0 43 clade 5862 2283794 2835 183925 25 1 Methanobacteria 0 14 class order 5 0 1 Methanobacteriales 24 2158 2821 1 0 family 146 2178 0 1 genus 146 2179 1 Methanothermus fervidus 0 species 146 2180 family 22 1 Methanobacteriaceae 3 0 2159 2670 genus 8 Methanobacterium 1 0 6 2160 927 59277 86 species 0 Methanobacterium subterraneum 1 118062 118 species 0 Methanobacterium congolense 1 174 2162 1 0 Methanobacterium formicicum species 877455 226 species 0 Methanobacterium lacus 1 no rank 0 2 2627676 214 93 1911685 0 Methanobacterium sp. MZ-A1 1 species Methanobacterium sp. MB1 0 1 species 121 1379702 species 1 0 Methanobacterium paludis 868131 103 2316 237 genus 0 1 2317 237 species Methanosphaera stadtmanae 0 1 2172 1300 genus 0 7 Methanobrevibacter 1 7 83816 195 species Methanobrevibacter ruminantium 0 1 0 Methanobrevibacter millerae 1 species 196 230361 398 2638681 0 2 no rank 225 224719 0 Methanobrevibacter sp. AbM4 1 species species 1 Methanobrevibacter sp. YE315 0 1609968 173 258 2173 1 0 Methanobrevibacter smithii species species Methanobrevibacter olleyae 0 1 294671 246 203 145260 5 1 Methanothermobacter 0 6 genus 0 1 no rank 38 2631116 866790 38 species Methanothermobacter sp. CaT2 0 1 43 145261 Methanothermobacter wolfeii 0 1 species 30 145262 1 Methanothermobacter thermautotrophicus 0 species species Methanothermobacter marburgensis 0 1 145263 86 0 1 1 Methanococci 18 class 3027 183939 1 Methanococcales 5 0 17 order 3026 2182 1206 196117 10 1 0 Methanocaldococcaceae 1 family 166 196119 Methanotorris 1 1 0 2 genus 1 Methanotorris igneus 0 species 165 2189 196118 1039 genus 7 2 0 1 Methanocaldococcus 2641196 212 no rank 0 1 644281 212 species 1 0 Methanocaldococcus sp. FS406-22 166 83171 0 Methanocaldococcus fervens 1 species 0 Methanocaldococcus vulcanius 1 species 197 73913 2190 154 species 0 Methanocaldococcus jannaschii 1 199 1301915 1 0 Methanocaldococcus bathoardescens species species Methanocaldococcus infernus 0 1 67760 109 2183 1815 family 5 0 Methanococcaceae 1 6 genus 1 0 155862 127 1 0 Methanothermococcus okinawensis species 127 155863 1683 2184 4 0 genus 155 2187 1 0 Methanococcus vannielii species 2188 606 species 1 Methanococcus voltae 0 42879 187 species 1 0 Methanococcus aeolicus 1 0 Methanococcus maripaludis species 735 39152 1637 2283796 0 18 clade 0 2 clade 202 1803510 379546 202 genus 2 0 110 2633939 0 1 no rank 673860 110 species 1 Aciduliprofundum sp. MAR08-339 0 92 379547 1 Aciduliprofundum boonei 0 species class Thermoplasmata 1 1 0 16 183967 1435 1234666 77 no rank 1 0 species methanogenic archaeon ISO4-H5 0 1 1495144 77 3 0 order 295 1235850 family 0 1 2517203 100 1291539 100 genus 1 0 100 1291540 0 Candidatus Methanomethylophilus alvus 1 species family 0 2 1577788 195 1607807 38 genus 1 0 species 0 Candidatus Methanoplasma termitum 1 1577791 38 0 1 genus 157 1080709 Candidatus Methanomassiliicoccus intestinalis 0 1 species 157 1406512 1062 2301 0 11 order 80 1919231 0 1 no rank species 1 Thermoplasmatales archaeon BRNA1 0 1054217 80 206 90142 3 0 family 74968 206 genus 3 0 4 1 Ferroplasma 94 74969 1 0 Ferroplasma acidiphilum species 1 Ferroplasma acidarmanus 0 species 108 97393 89 46659 0 3 family 4 0 Thermoplasma 1 3 genus 89 2302 2303 25 species Thermoplasma acidophilum 0 1 60 50339 Thermoplasma volcanium 0 1 species 0 5 1 Cuniculiplasmataceae 3 family 586 1747776 genus 0 97 Cuniculiplasma 1 2 1747777 581 1673428 484 species 1 0 Cuniculiplasma divulgatum family 1 0 46630 101 genus 1 0 46631 101 101 82076 1 Picrophilus torridus 0 species 108 0 clade 35074 2290931 79 0 Halobacteria 1 62 class 27086 183963 order 0 12 Halobacteriales 1 26 2235 3293 family 10 1 Halobacteriaceae 3 0 2236 1304 332246 181 genus 2 1 Halalkalicoccus 0 2 species 1 Halalkalicoccus jeotgali 0 413810 179 0 1 genus 85 1980514 0 Halodesulfurarchaeum formicicum 1 species 85 1873524 genus 1 Halobacterium 23 0 4 2239 943 337 1407499 1 Halobacterium hubeiense 0 species 2668073 306 no rank 0 1 species Halobacterium sp. DL1 0 1 751944 306 2242 277 species Halobacterium salinarum 0 1 2 2 0 1 Halanaeroarchaeum genus 92 1656823 Halanaeroarchaeum sulfurireducens 0 1 species 90 1604004 family 1 Haloarculaceae 0 14 15 1963268 1977 0 1 1 Halorientalis 2 genus 250 1073987 249 2648975 1 0 no rank 249 1932360 1 0 Halorientalis sp. IM1011 species 0 1 genus 226 203135 57705 226 species 0 Halomicrobium mukohataei 1 genus 1 Natronomonas 1 0 3 63743 407 195 2257 1 0 Natronomonas pharaonis species 211 416273 Natronomonas moolapensis 0 1 species genus 5 Haloarcula 1 0 5 2237 728 190 1932004 Haloarcula taiwanensis 0 1 species 191 51589 Haloarcula hispanica 0 1 species 1 0 no rank 188 2624677 1592728 188 species 1 0 Haloarcula sp. CBA1115 2238 154 species 1 0 Haloarcula marismortui 3 0 2 Halorhabdus 1 genus 352 146825 0 Halorhabdus tiamatea 1 species 189 430914 161 146826 1 0 Halorhabdus utahensis species 17 145 0 Natrialbales 1 order 11613 1644060 family 16 0 25 1 Natrialbaceae 1644061 11468 genus 1 0 29287 287 species 1 Natronococcus occultus 0 29288 287 387342 650 genus 0 1 species 1 Halopiger xanaduensis 0 387343 650 2 1 Halobiforma 0 2 genus 1217 203193 0 Halobiforma lacisalsi 1 species 1215 229731 88723 590 genus 1 Natrinema 0 2 3 1 0 no rank 214 2622230 214 406552 0 Natrinema sp. J7-2 1 species species 0 Natrinema pellirubrum 1 69525 374 genus 0 1 2256 347 1 0 Natronobacterium gregoryi species 347 44930 353799 195 genus 0 1 species 1 0 Halostagnicola larsenii 353800 195 63742 7078 genus 2 0 8 1 Natrialba Natrialba magadii 0 1 species 7070 13769 Haloterrigena 1 0 3 3 genus 817 121871 species 1 0 Haloterrigena turkmenica 62320 365 species 0 Haloterrigena daqingensis 1 588898 449 262 1269201 1 0 genus no rank 0 1 2621923 262 species 1 Salinarchaeum sp. Harcht-Bsk1 0 1333523 262 1644055 12101 order 85 0 Haloferacales 1 18 family Halorubraceae 1 3 0 8 1963271 1473 1644057 534 genus 1 Salinigranum 4 0 2 755307 530 species Salinigranum rubrum 0 1 310 1209988 1 Halopenitus 0 3 2 genus 307 1048396 Halopenitus persicus 0 1 species Halorubrum 1 7 0 3 genus 626 56688 1 Halorubrum lacusprofundi 0 species 294 2247 29284 325 species 1 0 Halorubrum trapanicum 10264 1644056 8 0 64 1 Haloferacaceae family 60846 175 genus 0 1 175 60847 1 Halogeometricum borinquense 0 species 4 22 0 1 Haloferax genus 2095 2251 species 1 0 Haloferax gibbonsii 35746 809 species 1 Haloferax mediterranei 0 2252 298 species 0 Haloferax volcanii 1 2246 966 7930 293431 0 4 Haloquadratum 1 2 genus species 1 0 Haloquadratum walsbyi 293091 7926 2678336 279 no rank 1 0 1 0 halophilic archaeon DL31 species 279 756883 Methanomicrobia 1 0 5 46 class 7988 224756 order 4 1 Methanocellales 0 1 570264 319 3 0 family 318 570265 570266 318 genus Methanocella 1 0 6 3 0 Methanocella conradii 1 species 62 1175444 1 0 Methanocella arvoryzae species 250 1175445 2191 991 order 14 8 0 1 Methanomicrobiales 4 Methanoregulaceae 1 15 0 family 270 1198451 0 1 genus 91 475087 475088 91 species 1 Methanosphaerula palustris 0 164 395331 0 2 genus 1 0 Methanoregula boonei species 92 358766 882104 72 species 0 Methanoregula formicica 1 family 2 0 88404 51 51 2192 2 1 Methanocorpusculum 15 0 genus 83984 36 species 0 Methanocorpusculum labreanum 1 108 196137 2 0 family 2202 108 genus 0 15 1 Methanospirillum 2 93 2203 1 0 Methanospirillum hungatei species 2194 554 family 5 1 Methanomicrobiaceae 19 0 genus 0 3 45989 461 143 2198 1 0 Methanoculleus marisnigri species 2619537 152 no rank 0 1 species 1 Methanoculleus sp. MAB1 0 86622 152 species 1 0 Methanoculleus bourgensis 83986 166 0 1 genus 74 230355 Methanolacinia petrolearia 0 1 species 74 54120 6673 94695 27 0 31 Methanosarcinales 1 order 3 1 Methanosaetaceae 1 0 family 342 143067 genus 2 0 2222 341 1 0 Methanosaeta harundinacea species 158 301375 species Methanothrix soehngenii 0 1 2223 183 6300 2206 23 0 5 1 Methanosarcinaceae family 101 101191 15 0 1 Methanomethylovorans 2 genus Methanomethylovorans hollandica 0 1 species 86 101192 genus 2 0 2175 180 species 1 0 Methanohalophilus halophilus 2177 76 2176 104 species Methanohalophilus mahii 0 1 2321 808 genus 0 1 2322 808 species Methanohalobium evestigatum 0 1 13 1 Methanosarcina 1 0 genus 4578 2207 418008 171 species Methanosarcina horonobensis 0 1 species 0 Methanosarcina acetivorans 1 2214 189 1 0 Methanosarcina lacustris species 400 170861 1249 2208 0 Methanosarcina barkeri 1 species species 0 Methanosarcina vacuolata 1 2215 225 832 2209 Methanosarcina mazei 0 1 species species 0 Methanosarcina thermophila 1 2210 243 887 2644672 4 0 no rank 210 1434099 Methanosarcina sp. Kolksee 0 1 species Methanosarcina sp. WH1 0 1 species 167 1434102 species 1 Methanosarcina sp. MTP4 0 1434100 306 1 Methanosarcina sp. WWM596 0 species 204 1434103 0 Methanosarcina siciliae 1 species 381 38027 1 0 genus 89 2220 420950 89 species 1 0 Methanolobus psychrophilus 2225 433 genus 0 2 species 1 0 Methanococcoides burtonii 29291 164 species 0 Methanococcoides methylutens 1 2226 269 196136 106 genus 0 1 39669 106 species 0 Methanosalsum zhilinae 1 469 183980 0 7 class 469 2231 7 0 order 7 0 family 469 2232 190818 110 genus 0 2 1 Geoglobus acetivorans 0 species 42 565033 1 0 Geoglobus ahangari species 68 113653 103 54260 1 0 genus species 1 0 Ferroglobus placidus 54261 103 256 2233 0 4 genus 1 Archaeoglobus sulfaticallidus 0 species 54 1316941 76 58290 0 Archaeoglobus veneficus 1 species species Archaeoglobus profundus 0 1 84156 58 1 Archaeoglobus fulgidus 0 species 68 2234 9797 183968 39 0 class 0 39 order 9797 2258 9797 2259 0 39 family 2 2 0 1 Palaeococcus genus 119 83867 117 971279 0 Palaeococcus pacificus 1 species 9309 2263 29 1 Thermococcus 5 0 genus species 1 Thermococcus barossii 0 54077 57 55802 102 species 0 Thermococcus barophilus 1 311400 33 species 1 Thermococcus kodakarensis 0 54262 57 species 1 Thermococcus chitonophagus 0 species Thermococcus gorgonarius 0 1 71997 27 species 0 Thermococcus peptonophilus 1 53952 31 1 Thermococcus siculi 0 species 7905 72803 187880 46 species 0 Thermococcus radiotolerans 1 2265 63 species 1 0 Thermococcus litoralis species 1 0 Thermococcus piezophilus 1712654 55 1 Thermococcus cleftensis 0 species 56 163003 6 0 no rank 235 2627626 species 1 0 Thermococcus sp. EXT12c 2016361 30 47 246969 0 Thermococcus sp. AM4 1 species species 1 Thermococcus sp. P6 0 122420 26 1 0 Thermococcus sp. 4557 species 38 1042877 56 1674923 Thermococcus sp. 2319x1 0 1 species 2008440 38 species 1 Thermococcus sp. 5-4 0 species Thermococcus profundus 0 1 49899 46 39 71998 0 Thermococcus pacificus 1 species 42 1505907 1 0 Thermococcus eurythermalis species 110164 41 species 0 Thermococcus guaymasensis 1 93 582419 0 Thermococcus paralvinellae 1 species 195522 34 species 1 0 Thermococcus nautili 55 342948 1 0 Thermococcus onnurineus species 277988 50 species 1 Thermococcus thioreducens 0 76 172049 1 0 Thermococcus sibiricus species 68 2264 0 Thermococcus celer 1 species 187878 93 species Thermococcus gammatolerans 0 1 genus 8 0 2 1 Pyrococcus 2260 369 124 2629106 0 2 no rank 1 Pyrococcus sp. ST04 0 species 70 1183377 54 342949 1 0 Pyrococcus sp. NA2 species 32 29292 1 0 Pyrococcus abyssi species 62 53953 1 Pyrococcus horikoshii 0 species species 1 Pyrococcus furiosus 0 2261 55 51 1609559 1 0 Pyrococcus kukulkanii species Pyrococcus yayanosii 0 1 species 43 1008460 name 0 1 0