members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4518 28436 11584225 30 2157 0 21854 247 superkingdom clade 2472 45 1783275 0 phylum 28889 0 1692 35 class 1 Thermoprotei 1 0 183924 35 1692 order 0 114380 12 482 161 4 2307 0 1 Pyrodictiaceae 1 family 54247 0 36 1 genus species Hyperthermus butylicus 0 54248 1 36 1 98 0 2308 genus Pyrodictium delaneyi species 98 1 1273541 0 genus 26 1 54251 0 Pyrolobus fumarii species 1 26 0 54252 8 321 0 2272 family genus 0 54253 1 12 species Thermosphaera aggregans 0 54254 1 12 genus 2 27 0 54258 Ignicoccus hospitalis species 1 18 0 160233 species Ignicoccus islandicus 0 54259 1 9 477695 0 20 1 genus 0 1200300 1 20 species Thermogladius calderae genus 0 2279 2 145 1 62 0 84599 Staphylothermus hellenicus species 2280 0 83 1 species Staphylothermus marinus genus 2273 0 117 2 species Desulfurococcus amylolyticus 0 94694 1 58 Desulfurococcus mucosus species 59 1 2275 0 order 1 Thermoproteales 1 2266 0 385 12 7 236 0 2267 1 Thermoproteaceae family 1 genus 0 76886 1 28 0 76887 1 28 species Caldivirga maquilingensis 2 55 0 164450 genus species Vulcanisaeta distributa 164451 0 33 1 0 985052 1 22 species Vulcanisaeta moutnovskia 2270 0 77 2 genus Thermoproteus uzoniensis species 1 48 0 184117 Thermoproteus tenax species 1 29 0 2271 0 2276 1 75 genus 75 1 2277 0 Pyrobaculum islandicum species 4 148 0 114378 family genus 0 2268 4 148 species Thermofilum carboxyditrophus 0 1483572 1 46 species Thermofilum adornatus 0 1365176 1 48 2269 0 44 1 species Thermofilum pendens species Thermofilum uzonense 1550241 0 10 1 8 740 0 2281 order family 8 740 0 118883 genus 0 69655 1 131 1 131 0 111955 Sulfolobus tokodaii species 2 86 0 41980 genus Metallosphaera cuprina species 50 1 1006005 0 species Metallosphaera sedula 43687 0 36 1 1 47 0 12914 genus species Acidianus hospitalis 563177 0 47 1 genus 118 1 2100760 0 1 118 0 2287 Sulfolobus solfataricus species genus 2284 0 358 3 species Sulfolobus islandicus 43080 0 216 1 0 2641160 1 89 no rank 1 89 0 1891280 Sulfolobus sp. A20 species species Sulfolobus acidocaldarius 2285 0 53 1 order 0 871006 2 84 family 1 41 0 255472 0 200414 1 41 genus Caldisphaera lagunensis species 1 41 0 200415 family 1 43 0 871007 1 43 0 105850 genus species Acidilobus saccharovorans 242703 0 43 1 0 651137 9 766 phylum order 3 396 0 31932 3 396 0 338190 family 309 2 338191 0 genus 212 1 1229909 0 Candidatus Nitrosopumilus sediminis species 0 1580092 1 97 species Candidatus Nitrosopumilus adriaticus genus 0 1993653 1 87 Candidatus Nitrosomarinus catalina species 1 87 0 1898749 no rank 0 651142 3 193 1825023 0 119 2 genus 1 104 0 1846278 Candidatus Nitrosotenuis sp. AQ6f species Candidatus Nitrosotenuis cloacae species 15 1 1603555 0 0 1593364 1 74 genus 74 1 1410606 0 Candidatus Nitrosopelagicus brevis species 177 3 1643678 0 class order 0 1968909 1 49 0 1968910 1 49 family genus 498374 0 49 1 49 1 2045011 0 Candidatus Nitrosocaldus islandicus species 1033996 0 128 2 order 0 1033997 2 128 family 2 128 0 497726 Nitrososphaera 2 genus 1 species Nitrososphaera viennensis 0 1034015 1 126 14 1 51967 0 phylum genus 0 498845 1 14 498846 0 14 1 species Candidatus Korarchaeum cryptofilum Euryarchaeota 2 1 phylum 201 19369 0 28890 clade 17 1417 0 2283796 2 84 0 1803510 clade 379546 0 84 2 genus species Aciduliprofundum boonei 379547 0 73 1 no rank 2633939 0 11 1 0 673860 1 11 species Aciduliprofundum sp. MAR08-339 1 class Thermoplasmata 13 0 183967 15 1333 1 203 0 1234666 no rank species methanogenic archaeon ISO4-H5 0 1495144 1 203 order 9 754 0 2301 1919231 0 204 1 no rank species Thermoplasmatales archaeon BRNA1 0 1054217 1 204 family 2 100 0 46659 genus 0 2302 2 100 50339 0 68 1 species Thermoplasma volcanium 2303 0 32 1 species Thermoplasma acidophilum 0 46630 1 88 family genus 46631 0 88 1 1 88 0 82076 Picrophilus torridus species 3 181 0 1747776 1 Cuniculiplasmataceae family 1 2 Cuniculiplasma 1 genus 2 180 0 1747777 1 178 0 1673428 Cuniculiplasma divulgatum species family 0 90142 2 181 181 2 74968 0 genus Ferroplasma acidiphilum species 73 1 74969 0 species Ferroplasma acidarmanus 97393 0 108 1 order 1235850 0 363 4 146 2 2517203 0 family 1 genus Candidatus Methanomethylophilus 3 0 1291539 2 146 Candidatus Methanomethylophilus alvus species 1 143 0 1291540 217 2 1577788 0 family genus 97 1 1080709 0 1406512 0 97 1 species Candidatus Methanomassiliicoccus intestinalis 1607807 0 120 1 genus Candidatus Methanoplasma termitum species 1 120 0 1577791 1 Thermococci 1 class 2358 40 183968 0 Thermococcales 4 order 1 39 2357 0 2258 family 1 1 Thermococcaceae 2259 0 2353 38 genus 7 520 0 2260 27 1 1008460 0 Pyrococcus yayanosii species 67 2 2629106 0 no rank 342949 0 30 1 species Pyrococcus sp. NA2 1 37 0 1183377 Pyrococcus sp. ST04 species 29292 0 22 1 species Pyrococcus abyssi species Pyrococcus horikoshii 0 53953 1 41 1 249 0 2261 Pyrococcus furiosus species Pyrococcus kukulkanii species 114 1 1609559 0 2 Thermococcus genus 1 1734 29 2263 0 no rank 6 412 0 2627626 122420 0 39 1 species Thermococcus sp. P6 species Thermococcus sp. 4557 0 1042877 1 62 246969 0 132 1 species Thermococcus sp. AM4 2016361 0 83 1 species Thermococcus sp. EXT12c 0 2008440 1 57 species Thermococcus sp. 5-4 39 1 1674923 0 Thermococcus sp. 2319x1 species Thermococcus sibiricus species 146 1 172049 0 18 1 342948 0 Thermococcus onnurineus species Thermococcus pacificus species 17 1 71998 0 1 23 0 54077 Thermococcus barossii species species Thermococcus barophilus 0 55802 1 121 species Thermococcus nautili 195522 0 66 1 species Thermococcus chitonophagus 0 54262 1 69 1 39 0 2264 Thermococcus celer species 39 1 163003 0 Thermococcus cleftensis species species Thermococcus paralvinellae 0 582419 1 45 38 1 311400 0 Thermococcus kodakarensis species 1 32 0 1505907 Thermococcus eurythermalis species 57 1 71997 0 Thermococcus gorgonarius species 0 277988 1 82 species Thermococcus thioreducens 96 1 2265 0 Thermococcus litoralis species Thermococcus guaymasensis species 50 1 110164 0 Thermococcus piezophilus species 1 79 0 1712654 1 51 0 72803 Thermococcus siculi species Thermococcus profundus species 26 1 49899 0 53952 0 67 1 species Thermococcus peptonophilus 1 68 0 187880 Thermococcus radiotolerans species 91 1 187878 0 Thermococcus gammatolerans species genus 83867 0 98 1 Palaeococcus pacificus species 1 98 0 971279 0 2290931 101 10822 clade 1 class 22 Halobacteria 183963 0 4427 57 0 1644060 17 1268 order 1 Natrialbales 5 family 1 Natrialbaceae 19 0 1644061 16 1263 387342 0 135 1 genus 387343 0 135 1 species Halopiger xanaduensis genus 2 269 0 121871 588898 0 110 1 species Haloterrigena daqingensis 62320 0 159 1 species Haloterrigena turkmenica 86 1 1269201 0 genus 1 86 0 2621923 no rank 0 1333523 1 86 species Salinarchaeum sp. Harcht-Bsk1 genus 63742 0 118 1 Natrialba magadii species 1 118 0 13769 56 2 2256 0 Natronobacterium 1 1 genus 44930 0 55 1 species Natronobacterium gregoryi 29287 0 155 2 genus 1 7 Natronococcus 29288 0 148 1 species Natronococcus occultus 88723 0 206 3 genus 1 11 Natrinema no rank 96 1 2622230 0 96 1 406552 0 Natrinema sp. J7-2 species species Natrinema pellirubrum 69525 0 99 1 0 203193 1 163 genus Halobiforma lacisalsi species 163 1 229731 0 2 56 0 353799 Halostagnicola 1 genus 1 0 353800 1 55 species Halostagnicola larsenii 9 Haloferacales 1 order 1180 14 1644055 0 1963271 0 414 5 family 1 genus 8 Halorubrum 0 56688 3 112 0 29284 1 68 species Halorubrum trapanicum 36 1 2247 0 Halorubrum lacusprofundi species 0 1644057 1 221 genus species Salinigranum rubrum 755307 0 221 1 1 81 0 1209988 genus 1048396 0 81 1 species Halopenitus persicus 628 7 1644056 0 6 Haloferacaceae family 1 genus 1 Haloferax 5 2251 0 387 4 species Haloferax mediterranei 2252 0 70 1 1 133 0 2246 Haloferax volcanii species Haloferax gibbonsii species 1 179 0 35746 1 80 0 293431 genus species Haloquadratum walsbyi 0 293091 1 80 1 155 0 60846 genus species Halogeometricum borinquense 0 60847 1 155 1 129 0 2678336 no rank 129 1 756883 0 halophilic archaeon DL31 species 0 2235 25 1957 order 1 Halobacteriales 44 4 Halobacteriaceae family 1 706 9 2236 0 1656823 0 53 1 genus species Halanaeroarchaeum sulfurireducens 0 1604004 1 53 Halalkalicoccus 3 genus 1 148 2 332246 0 Halalkalicoccus jeotgali species 145 1 413810 0 genus 0 1980514 1 100 1 100 0 1873524 Halodesulfurarchaeum formicicum species 4 401 0 2239 Halobacterium 8 genus 1 species Halobacterium salinarum 2242 0 104 1 no rank 132 1 2668073 0 751944 0 132 1 species Halobacterium sp. DL1 Halobacterium hubeiense species 1 157 0 1407499 15 1207 0 1963268 Haloarculaceae 13 family 1 1 genus 1 Halomicrobium 0 203135 2 121 0 57705 1 120 species Halomicrobium mukohataei genus 146825 0 303 2 146826 0 245 1 species Halorhabdus utahensis 58 1 430914 0 Halorhabdus tiamatea species 3 174 0 63743 Natronomonas 2 1 genus Natronomonas moolapensis species 1 52 0 416273 1 120 0 2257 Natronomonas pharaonis species Haloarcula 3 1 genus 415 5 2237 0 species Haloarcula hispanica 0 51589 1 89 Haloarcula taiwanensis species 83 1 1932004 0 101 1 2624677 0 no rank species Haloarcula sp. CBA1115 1592728 0 101 1 species Haloarcula marismortui 2238 0 139 1 2 181 0 1073987 Halorientalis 11 1 genus 170 1 2648975 0 no rank species Halorientalis sp. IM1011 1932360 0 170 1 0 224756 44 6395 1 class 11 Methanomicrobia 1 order Methanocellales 2 0 570264 4 318 family 570265 0 316 3 3 316 0 570266 Methanocella 1 genus 1 Methanocella conradii species 40 1 1175444 0 1175445 0 275 1 species Methanocella arvoryzae 0 2191 12 1269 1 order Methanomicrobiales 4 family 2194 0 587 4 genus 1 141 0 230355 species Methanolacinia petrolearia 0 54120 1 141 45989 0 446 3 genus species Methanoculleus marisnigri 0 2198 1 102 Methanoculleus bourgensis species 213 1 83986 0 2619537 0 131 1 no rank 1 131 0 86622 Methanoculleus sp. MAB1 species 0 88404 1 204 family 0 2192 1 204 genus 0 83984 1 204 species Methanocorpusculum labreanum 342 5 1198451 0 Methanoregulaceae 2 1 family 1 96 0 475087 genus 475088 0 96 1 species Methanosphaerula palustris 395331 0 244 3 1 genus 1 Methanoregula Methanoregula formicica species 1 132 0 882104 1 111 0 358766 Methanoregula boonei species family 0 196137 1 132 132 1 2202 0 genus 1 132 0 2203 Methanospirillum hungatei species 3 Methanosarcinales order 1 4797 27 94695 0 Methanosarcinaceae 3 1 family 22 4491 0 2206 194 1 101191 0 genus Methanomethylovorans hollandica species 1 194 0 101192 genus 118 1 2220 0 118 1 420950 0 Methanolobus psychrophilus species 2175 0 270 2 genus 154 1 2176 0 Methanohalophilus mahii species 116 1 2177 0 Methanohalophilus halophilus species 191 1 196136 0 genus 1 191 0 39669 Methanosalsum zhilinae species 2 243 0 2225 genus 0 2226 1 109 species Methanococcoides methylutens Methanococcoides burtonii species 1 134 0 29291 2207 0 3362 13 genus 1 5 Methanosarcina 920 4 2644672 0 no rank species Methanosarcina sp. WH1 1434102 0 236 1 Methanosarcina sp. MTP4 species 154 1 1434100 0 1 303 0 1434099 Methanosarcina sp. Kolksee species Methanosarcina sp. WWM596 species 1 227 0 1434103 species Methanosarcina horonobensis 0 418008 1 247 2208 0 544 1 species Methanosarcina barkeri 0 2215 1 207 species Methanosarcina vacuolata Methanosarcina lacustris species 1 156 0 170861 38027 0 402 1 species Methanosarcina siciliae species Methanosarcina thermophila 2210 0 220 1 Methanosarcina acetivorans species 227 1 2214 0 species Methanosarcina mazei 0 2209 1 434 genus 0 2321 1 110 species Methanohalobium evestigatum 2322 0 110 1 4 303 0 143067 12 Methanosaetaceae 1 family 1 genus Methanothrix 1 0 2222 3 291 Methanothrix soehngenii species 191 1 2223 0 1 99 0 301375 Methanosaeta harundinacea species 1 class Archaeoglobi 1 183980 0 589 9 order 0 2231 8 588 family 1 3 Archaeoglobaceae 0 2232 8 588 1 44 0 54260 genus Ferroglobus placidus species 44 1 54261 0 genus 4 418 0 2233 0 2234 1 204 species Archaeoglobus fulgidus 0 58290 1 103 species Archaeoglobus veneficus Archaeoglobus sulfaticallidus species 1 41 0 1316941 84156 0 70 1 species Archaeoglobus profundus 2 123 0 190818 genus species Geoglobus acetivorans 0 565033 1 62 0 113653 1 61 species Geoglobus ahangari 0 2283794 33 4181 clade class 0 183925 19 2388 2158 0 2388 19 order 18 2349 0 2159 family 4 178 0 145260 genus species Methanothermobacter wolfeii 0 145261 1 34 145262 0 31 1 species Methanothermobacter thermautotrophicus 145263 0 67 1 species Methanothermobacter marburgensis no rank 1 46 0 2631116 species Methanothermobacter sp. CaT2 866790 0 46 1 genus 2172 0 1369 6 0 2173 1 387 species Methanobrevibacter smithii 0 230361 1 276 species Methanobrevibacter millerae 0 83816 1 147 species Methanobrevibacter ruminantium no rank 2638681 0 329 2 species Methanobrevibacter sp. YE315 1609968 0 169 1 Methanobrevibacter sp. AbM4 species 160 1 224719 0 0 294671 1 230 species Methanobrevibacter olleyae 2316 0 125 1 genus 125 1 2317 0 Methanosphaera stadtmanae species genus 677 7 2160 0 0 2162 1 158 species Methanobacterium formicicum 2 170 0 2627676 no rank 1 137 0 1911685 Methanobacterium sp. MZ-A1 species 33 1 1379702 0 Methanobacterium sp. MB1 species Methanobacterium lacus species 120 1 877455 0 species Methanobacterium subterraneum 59277 0 83 1 83 1 118062 0 Methanobacterium congolense species Methanobacterium paludis species 1 63 0 868131 0 2178 1 39 family 1 39 0 2179 genus species Methanothermus fervidus 0 2180 1 39 Methanococci 1 class 1 14 1793 0 183939 0 2182 13 1792 order 196117 0 739 8 family 196119 0 105 1 genus 1 105 0 2189 Methanotorris igneus species 1 Methanocaldococcus genus 1 7 634 0 196118 species Methanocaldococcus fervens 83171 0 162 1 1 70 0 73913 Methanocaldococcus vulcanius species 0 1301915 1 156 species Methanocaldococcus bathoardescens 0 2190 1 104 species Methanocaldococcus jannaschii 1 74 0 2641196 no rank species Methanocaldococcus sp. FS406-22 0 644281 1 74 species Methanocaldococcus infernus 67760 0 67 1 family 1053 5 2183 0 genus 1 87 0 155862 Methanothermococcus okinawensis species 87 1 155863 0 genus 966 4 2184 0 0 2187 1 133 species Methanococcus vannielii 39152 0 636 1 species Methanococcus maripaludis species Methanococcus voltae 2188 0 69 1 128 1 42879 0 Methanococcus aeolicus species clade 1783276 0 13 1 1801631 0 13 1 phylum 1 13 0 2490204 genus 0 1920749 1 13 species Candidatus Micrarchaeota archaeon Mia14 0 name 1 0 0 2 4240 11533935 superkingdom 1 32 Bacteria clade 0 2498710 3 246 0 67814 3 246 phylum 693071 0 246 3 class 1 2 Caldisericia order 0 693072 2 244 family 0 693073 2 244 Caldisericum 7 1 genus 2 244 0 693074 237 1 693075 0 Caldisericum exile species phylum 0 57723 19 3809 17 3424 0 204432 21 Acidobacteriia 1 class 1 order Acidobacteriales 20 204433 0 2725 12 0 204434 11 2705 1 family Acidobacteriaceae 23 4 Terriglobus 1 genus 3 839 0 392733 0 870903 1 301 species Terriglobus saanensis 1 534 0 392734 Terriglobus roseus species Candidatus Koribacter 6 1 genus 2 577 0 658061 species Candidatus Koribacter versatilis 658062 0 571 1 1 genus Granulicella 1 940557 0 873 3 940614 0 524 1 species Granulicella mallensis 1 348 0 940615 Granulicella tundricola species 0 33973 2 393 1 genus Acidobacterium 2 Acidobacterium capsulatum species 391 1 33075 0 0 332160 4 678 order 1 5 Solibacterales 673 3 332161 0 Solibacteraceae 2 1 family 332162 0 671 2 genus 1 3 Candidatus Solibacter 332163 0 668 1 species Candidatus Solibacter usitatus 385 2 1562566 0 class 0 458032 2 385 1 genus 12 Chloracidobacterium Chloracidobacterium thermophilum species 373 1 458033 0 phylum 200938 0 807 4 118001 0 807 4 class 807 4 189769 0 8 Chrysiogenales order 1 799 3 189770 0 Chrysiogenaceae 9 1 family 393029 0 790 2 1 genus Desulfurispirillum 2 936456 0 788 1 species Desulfurispirillum indicum 27860 84 1783257 0 clade phylum 3 1261 0 256845 0 1313211 3 1261 class 1 21 Lentisphaeria order 1 98 Victivallales 278082 0 1240 2 1142 1 1674876 0 no rank 2094242 0 1142 1 species Victivallales bacterium CCUG 44730 7327 30 203682 0 phylum 1 class 1 Phycisphaerae 0 666505 7 2208 385 4 666506 0 22 Phycisphaerales order 1 666507 0 363 3 1 family Phycisphaeraceae 3 666508 0 360 2 genus 1 1 Phycisphaera 547188 0 359 1 species Phycisphaera mikurensis order 2483366 0 1822 2 family 0 2483367 2 1822 genus 1822 2 2483368 0 1941349 0 939 1 species Phycisphaerae bacterium ST-PulAB-D4 1 883 0 1940790 Phycisphaerae bacterium L21-RPul-D3 species 21 4703 0 203683 Planctomycetia 17 1 class 276 2 2691355 0 order family 2 276 0 1914233 1 genus Gemmata 1 113 0 276 2 no rank 1 275 0 2622970 1630693 0 275 1 species Gemmata sp. SH-PL17 order 2691356 0 1189 6 6 1189 0 1763524 2 Isosphaeraceae family 1 2 205 0 127 1 Isosphaera genus 1 Isosphaera pallida species 1 204 0 128 2 626 0 1763521 4 Paludisphaera 1 genus 0 1387353 1 622 species Paludisphaera borealis genus 0 466152 1 356 0 466153 1 356 species Singulisphaera acidiphila Planctomycetales 54 order 1 2508 8 112 0 family 2454 7 126 0 3 Rubinisphaera 1 genus 2 419 0 1649490 Rubinisphaera brasiliensis species 416 1 119 0 1936111 0 711 1 genus 1 711 0 1891926 Fuerstia marisgermanicae species genus 383 1 1649480 0 120 0 383 1 species Planctopirus limnophila 1 genus Planctomyces 24 118 0 941 3 0 2648843 2 917 no rank Planctomyces sp. SH-PL62 species 591 1 1636152 0 Planctomyces sp. SH-PL14 species 326 1 1632864 0 order 713 4 2691354 0 family 2691357 0 479 3 123 0 164 1 genus Pirellula staleyi species 1 164 0 125 genus 1 1 Rhodopirellula 0 265488 2 315 species Rhodopirellula baltica 265606 0 314 1 family 234 1 2691358 0 1 234 0 1676125 genus 1 234 0 1331910 Thermogutta terrifontis species class 2517206 0 416 2 0 1127829 2 416 order 1 7 Candidatus Brocadiales family 1 409 0 1127830 409 1 380738 0 genus Candidatus Kuenenia stuttgartiensis species 1 409 0 174633 398 5 134625 0 phylum 5 398 0 1921781 Kiritimatiellae 2 1 class 396 4 1921782 0 3 Kiritimatiellales order 1 1 family 1 Kiritimatiellaceae 0 1921783 3 393 1 genus Kiritimatiella 14 1921784 0 392 2 1307763 0 378 1 species Kiritimatiella glycovorans 17545 25 74201 0 4 Verrucomicrobia 1 phylum 52 1 134549 0 class genus 52 1 134550 0 1 52 0 2648876 no rank Candidatus Xiphinematobacter sp. Idaho Grape species 1 52 0 1704307 2 1068 0 417295 no rank 1 402 0 1637999 Verrucomicrobia bacterium IMCC26134 species Verrucomicrobia bacterium species 1 666 0 2026799 class 1 42 Opitutae 0 414999 12 2189 433 4 415001 0 3 Puniceicoccales 1 order 430 3 415002 0 Puniceicoccaceae 2 1 family 2 428 0 442430 5 Coraliomargarita 1 genus Coraliomargarita akajimensis species 1 423 0 395922 41 Opitutales 1 order 1714 7 415000 0 Opitutaceae 15 family 1 6 1673 0 134623 730 1 278955 0 no rank species Opitutaceae bacterium TAV5 794903 0 730 1 178440 0 358 2 genus 1 Opitutus 3 0 107709 1 355 species Opitutus terrae 0 1961799 2 570 genus 1 Lacunisphaera 18 0 1838286 1 552 species Lacunisphaera limnophila 0 1955630 3 378 class 717963 0 378 3 order family 3 378 0 717964 1 Methylacidiphilum 1 genus 378 3 511745 0 1 251 0 511746 Methylacidiphilum infernorum species 0 591154 1 126 species Methylacidiphilum fumariolicum 1 class 11 Verrucomicrobiae 0 203494 6 13854 order 1 10 Verrucomicrobiales 48461 0 13843 5 Akkermansiaceae 8 family 1 13833 4 1647988 0 3 13825 0 239934 Akkermansia 1 genus 1 1 12222 0 239935 Akkermansia muciniphila species Akkermansia glycaniphila species 1602 1 1679444 0 0 204428 21 1329 phylum 0 204429 21 1329 1 class 15 Chlamydiia order 1 34 Parachlamydiales 0 1963360 6 523 92713 0 306 3 1 family Parachlamydiaceae 1 genus 123 1 282132 0 Candidatus Protochlamydia naegleriophila species 123 1 389348 0 182 1 83551 0 genus 0 83552 1 182 species Parachlamydia acanthamoebae 92712 0 87 1 family 1 87 0 34093 genus species Simkania negevensis 0 83561 1 87 family 0 92714 1 96 0 71666 1 96 genus species Waddlia chondrophila 71667 0 96 1 3 Chlamydiales 1 order 14 791 0 51291 2 Chlamydiaceae family 1 13 788 0 809 no rank 12 786 0 1113537 0 810 12 786 1 genus 8 Chlamydia Chlamydia trachomatis species 130 1 813 0 Chlamydia muridarum species 1 72 0 83560 Chlamydia abortus species 93 1 83555 0 26 1 83554 0 Chlamydia psittaci species 1 39 0 83559 Chlamydia suis species 32 1 83557 0 Chlamydia caviae species species Chlamydia avium 0 1457141 1 50 Chlamydia pecorum species 1 75 0 85991 Chlamydia pneumoniae species 1 52 0 83558 Chlamydia gallinacea species 79 1 1457153 0 Chlamydia felis species 1 130 0 83556 clade 1783270 0 7742159 344 0 456828 1 368 phylum 0 456826 1 368 genus 368 1 456827 0 Candidatus Cloacimonas acidaminovorans species 1379 3 65842 0 phylum class 1379 3 204430 0 1 order 6 Fibrobacterales 0 218872 3 1379 0 204431 2 1373 family 0 832 2 1373 genus 1 6 Fibrobacter 0 833 1 1367 species Fibrobacter succinogenes clade 333 7738791 0 68336 13 Bacteroidetes phylum 1 305 7731408 0 976 105080 136 117743 0 Flavobacteriia 37 1 class 105043 135 200644 0 39 Flavobacteriales order 1 no rank 2 173 0 313602 112 1 336809 0 genus Candidatus Sulcia muelleri species 112 1 336810 0 1 61 0 1940138 genus 1415657 0 61 1 species Candidatus Walczuchella monophlebidarum 632 2 1853230 0 family 2 632 0 332102 Fluviicola 8 1 genus 624 1 191579 0 Fluviicola taffensis species 1 family 2 Ichthyobacteriaceae 0 1755828 2 117 genus 1 115 0 1755829 Ichthyobacterium seriolicida species 1 115 0 242600 0 49546 98 64171 1 family 534 Flavobacteriaceae genus 286104 0 918 2 2615021 0 918 2 no rank 1 399 0 1936080 Winogradskyella sp. J14-2 species Winogradskyella sp. PG-2 species 519 1 754409 0 1 genus Flavobacterium 14 0 237 9 7202 55197 0 458 1 species Flavobacterium branchiophilum 0 312277 1 293 species Flavobacterium indicum Flavobacterium gilvum species 1 1020 0 1492737 356 1 1763534 0 Flavobacterium crassostreae species 0 1306519 1 699 species Flavobacterium commune 0 96345 1 493 species Flavobacterium psychrophilum 1 2992 0 986 Flavobacterium johnsoniae species 1 877 0 996 Flavobacterium columnare species genus 0 393005 1 956 Tamlana sp. UJ94 species 956 1 2069432 0 genus 83612 0 713 1 species Psychroflexus torquis 57029 0 713 1 603 1 153265 0 genus 0 101385 1 603 species Aequorivita sublithincola 337 1 336276 0 genus no rank 2615019 0 337 1 2058135 0 337 1 species Olleya sp. Bg11-27 1016 0 16436 15 genus 1 Capnocytophaga 68 no rank 6 6430 0 2640652 0 1945658 1 539 species Capnocytophaga sp. H4358 Capnocytophaga sp. H2931 species 1 483 0 1945657 1705617 0 1275 1 species Capnocytophaga sp. oral taxon 323 1 1110 0 1316593 Capnocytophaga sp. oral taxon 864 species Capnocytophaga sp. oral taxon 878 species 1 2042 0 1316596 Capnocytophaga sp. ChDC OS43 species 1 981 0 209053 Capnocytophaga gingivalis species 1 864 0 1017 species Capnocytophaga leadbetteri 327575 0 2076 1 962 1 1018 0 Capnocytophaga ochracea species 0 45243 1 932 species Capnocytophaga haemolytica species Capnocytophaga stomatis 0 1848904 1 1225 1 992 0 28188 Capnocytophaga canimorsus species 28189 0 1150 1 species Capnocytophaga cynodegmi 1019 0 1737 1 species Capnocytophaga sputigena 0 104264 4 3405 1 genus 1 Cellulophaga 0 979 1 690 species Cellulophaga lytica species Cellulophaga algicola 0 59600 1 1246 0 76594 1 1468 species Cellulophaga baltica genus 2 798 0 225842 2 798 0 2644710 no rank Formosa sp. Hel3_A1_48 species 1 406 0 1336795 species Formosa sp. Hel1_33_131 1336794 0 392 1 genus 112040 0 1233 1 1233 1 63186 0 Zobellia galactanivorans species 363408 0 2129 5 1 genus Nonlabens 3 no rank 0 2615035 2 666 363 1 1476901 0 Nonlabens sp. MIC269 species 1 303 0 2058134 Nonlabens sp. MB-3u-79 species species Nonlabens sediminis 0 319236 1 331 Nonlabens dokdonensis species 1129 1 328515 0 252306 0 442 2 1 genus Robiginitalea 5 species Robiginitalea biformata 0 252307 1 437 5 2239 0 252356 82 Maribacter 1 genus species Maribacter cobaltidurans 1178778 0 466 1 2615042 0 1691 3 no rank Maribacter sp. HTCC2170 species 517 1 313603 0 species Maribacter sp. T28 0 1836467 1 484 Maribacter sp. 1_2014MBL_MicDiv species 690 1 1644130 0 no rank 0 61432 2 1242 0 1150389 1 664 species Flavobacteriaceae bacterium UJ101 species Flavobacteriaceae bacterium 3519-10 531844 0 578 1 genus 0 104267 4 2294 Tenacibaculum jejuense species 474 1 584609 0 Tenacibaculum dicentrarchi species 1 585 0 669041 595 1 1850252 0 Tenacibaculum todarodis species 1 640 0 107401 Tenacibaculum maritimum species 0 292691 5 3526 genus 1 8 Gramella species Gramella sp. SH35 2126553 0 820 1 650 1 1486245 0 Gramella flava species 0 1913577 1 838 species Gramella sp. LPB0144 species Gramella forsetii 411153 0 1210 1 52959 0 3099 6 genus 1 8 Polaribacter species Polaribacter reichenbachii 0 996801 1 669 1656 3 196858 0 no rank 1 330 0 313598 Polaribacter sp. MED152 species Polaribacter sp. ALD11 species 611 1 2058137 0 1 715 0 1529069 Polaribacter sp. BM10 species 1774273 0 766 1 species Polaribacter vadi genus 0 1209327 1 740 Flavivirga eckloniae species 1 740 0 1803846 1470 1 358023 0 genus species Lutibacter profundi 0 1622118 1 1470 genus 0 1518147 1 763 1 763 0 1790137 Wenyingzhuangia fucanilytica species 552 4 326319 0 Dokdonia 2 genus 1 no rank 427 2 2615033 0 species Dokdonia sp. 4H-3-7-5 983548 0 270 1 Dokdonia sp. MED134 species 1 157 0 313590 0 326320 1 123 species Dokdonia donghaensis 1176327 0 530 1 genus 0 2636237 1 530 no rank 1 530 0 2094025 Aureitalea sp. RR4-38 species 76831 0 2198 5 genus 1 71 Myroides 0 76832 1 556 species Myroides odoratimimus 539 1 480520 0 Myroides profundi species no rank 0 2642485 2 1032 603 1 1458492 0 Myroides sp. ZB35 species 429 1 1583100 0 Myroides sp. A21 species genus 1 Muricauda 4 0 111500 3 1447 0 516051 1 559 species Muricauda lutaonensis 1 884 0 111501 Muricauda ruestringensis species 0 1204360 1 777 genus 1 777 0 762954 Siansivirga zeaxanthinifaciens species genus 1 562 0 261827 Algibacter alginicilyticus species 562 1 1736674 0 216431 0 390 1 genus 1 390 0 313588 Croceibacter atlanticus species Salegentibacter 2 genus 1 2 613 0 143222 2633436 0 611 1 no rank Salegentibacter sp. T436 species 611 1 1729720 0 601 1 178469 0 genus Arenibacter algicola species 601 1 616991 0 genus 1 5 Zunongwangia 417127 0 896 2 398743 0 891 1 species Zunongwangia profunda genus 1649495 0 1228 1 2622645 0 1228 1 no rank species Seonamhaeicola sp. S2-3 0 1936081 1 1228 0 389486 1 299 genus no rank 1 299 0 2648869 Sediminicola sp. YIK13 species 299 1 1453352 0 genus 784 1 2700084 0 Lutibacter sp. LPB0138 species 1 784 0 1850246 291183 0 2215 4 1 genus Lacinutrix 19 1486034 0 559 1 species Lacinutrix venerupis 1637 2 2647285 0 no rank species Lacinutrix sp. 5H-3-7-4 983544 0 530 1 species Lacinutrix sp. Bg11-31 0 2057808 1 1107 0 39782 9 590 family 1 genus 16 Blattabacterium 34098 0 590 9 Blattabacterium punctulatus species 1 58 0 164514 species Blattabacterium cuenoti 1653831 0 92 1 6 424 0 2647581 no rank 1 51 0 1186051 Blattabacterium sp. (Blaberus giganteus) species Blattabacterium sp. (Mastotermes darwiniensis) species 1 53 0 39768 1 56 0 367806 Blattabacterium sp. (Blatta orientalis) species 127 1 367488 0 Blattabacterium sp. (Periplaneta americana) species Blattabacterium sp. (Nauphoeta cinerea) species 1 33 0 1316444 Blattabacterium sp. (Blattella germanica) species 1 104 0 624186 1333713 0 871 1 family genus 871 1 267986 0 species Owenweeksia hongkongensis 253245 0 871 1 0 2762318 20 38450 family 1 genus 28 Ornithobacterium 28250 0 17644 2 1 17616 0 28251 Ornithobacterium rhinotracheale species 2782232 0 12325 10 no rank 0 2782228 1 793 genus species Chryseobacterium taklimakanense 0 536441 1 793 9 11532 0 59732 45 Chryseobacterium 1 genus species Chryseobacterium glaciei 0 1685010 1 722 Chryseobacterium piperi species 729 1 558152 0 1324352 0 3802 1 species Chryseobacterium gallinarum 3 3183 0 2593645 no rank 1 1056 0 2015076 Chryseobacterium sp. T16E-39 species species Chryseobacterium sp. StRB126 0 878220 1 679 species Chryseobacterium sp. IHB B 17019 1721091 0 1448 1 Chryseobacterium camelliae species 1007 1 1265445 0 species Chryseobacterium indologenes 253 0 2044 1 0 1013 1 300 genus 1 300 0 1014 Weeksella virosa species genus 1 Elizabethkingia 24 308865 0 6668 6 0 172045 1 1415 species Elizabethkingia miricola Elizabethkingia genomosp. 4 species 1 818 0 1756150 1117645 0 2560 1 species Elizabethkingia anophelis 1756149 0 736 1 species Elizabethkingia genomosp. 3 1115 1 238 0 Elizabethkingia meningoseptica species 34084 0 1513 1 genus 34085 0 1513 1 species Riemerella anatipestifer order 1 Bacteroidetes Order II. Incertae sedis 12 0 1100069 7 1924 Rhodothermaceae 13 family 1 1912 6 563843 0 1 670 0 1196022 no rank species Rhodothermaceae bacterium RA 1779382 0 670 1 Salinibacter 1 1 genus 2 347 0 146918 species Salinibacter ruber 146919 0 346 1 29548 0 882 2 1 genus Rhodothermus 25 species Rhodothermus marinus 0 29549 1 857 0 768503 55 31450 1 class 59 Cytophagia 0 768507 54 31391 order 1 Cytophagales 95 402 2 2762301 0 family 402 2 869806 0 Marivirga 2 genus 1 400 1 1006 0 Marivirga tractuosa species 2059 3 1853234 0 2 Persicobacteraceae 1 family 2 2057 0 59740 2 Persicobacter genus 1 no rank 0 2664020 1 2055 species Persicobacter sp. JZB09 1085624 0 2055 1 14 8547 0 89373 Cytophagaceae 20 family 1 3 Dyadobacter genus 1 1255 2 120831 0 species Dyadobacter fermentans 94254 0 1252 1 4 Spirosoma 1 genus 6 4023 0 107 Spirosoma sp. HA7 species 1 828 0 2057025 784 1 564064 0 Spirosoma rigui species Spirosoma aerolatum species 1 722 0 1211326 Spirosoma radiotolerans species 1 1066 0 1379870 1178516 0 619 1 species Spirosoma montaniterrae genus 1 1075 0 105 species Runella slithyformis 0 106 1 1075 Cytophaga 2 1 genus 693 2 978 0 Cytophaga hutchinsonii species 691 1 985 0 genus 861914 0 654 1 no rank 1 654 0 2620963 1 654 0 1834519 Fibrella sp. ES10-3-2-2 species 1 827 0 319458 genus 0 316068 1 827 species Leadbetterella byssophila 1 family 1 Bernardetiaceae 1937968 0 631 3 1 Bernardetia genus 1 630 2 1937972 0 species Bernardetia litoralis 0 999 1 629 1853232 0 13474 16 1 family 47 Hymenobacteraceae genus 1 Rufibacter 11 1379908 0 2763 4 Rufibacter tibetensis species 1 1215 0 512763 no rank 1537 2 2639626 0 Rufibacter sp. DG15C species 1 839 0 1379909 Rufibacter sp. DG31D species 1 698 0 1379910 genus 1 Hymenobacter 94 0 89966 8 8713 Hymenobacter sedentarius species 1835 1 1411621 0 species Hymenobacter swuensis 1446467 0 1372 1 no rank 5412 5 2615202 0 1 722 0 1385663 Hymenobacter sp. DG25A species species Hymenobacter sp. PAMC 26554 0 1484116 1 1070 0 1385664 1 889 species Hymenobacter sp. DG25B 1484118 0 1246 1 species Hymenobacter sp. PAMC 26628 1485 1 1356852 0 Hymenobacter sp. APR13 species 1 genus 9 Pontibacter 323449 0 1951 3 species Pontibacter akesuensis 0 388950 1 1080 1 862 0 400092 Pontibacter korlensis species 0 1501348 3 270 family 281119 0 186 2 1 genus 2 Candidatus Amoebophilus 184 1 281120 0 Candidatus Amoebophilus asiaticus species genus 0 273135 1 84 1 84 0 2641185 no rank 249402 0 84 1 species Cardinium endosymbiont of Encarsia pergandiella Flammeovirgaceae 1 1 family 4 2246 0 200667 1 genus 2 Flammeovirga 0 59739 2 1309 2637820 0 1307 1 no rank 0 1191459 1 1307 species Flammeovirga sp. MY04 936 1 340671 0 no rank Flammeovirgaceae bacterium 311 species 1 936 0 1257021 8 3667 0 563798 4 Cyclobacteriaceae 1 family 1590 3 68288 0 Cyclobacterium 3 genus 1 0 320787 1 626 species Cyclobacterium amurskyense 961 1 104 0 Cyclobacterium marinum species 0 246875 1 338 genus species Algoriphagus sp. M8-2 1727163 0 338 1 1146 1 390846 0 genus species Echinicola vietnamensis 0 390884 1 1146 2 Belliella 1 genus 2 589 0 232244 species Belliella baltica 0 232259 1 587 Sphingobacteriia 7 class 1 23 18868 0 117747 1 order Sphingobacteriales 22 200666 0 18861 22 family 1 23 Sphingobacteriaceae 0 84566 21 18839 6 6389 0 84567 Pedobacter 11 genus 1 188932 0 886 1 species Pedobacter cryoconitis 0 984 1 999 species Pedobacter heparinus species Pedobacter steynii 0 430522 1 1826 no rank 0 2628915 1 1450 species Pedobacter sp. PACM 27299 0 1727164 1 1450 0 363852 1 1217 species Pedobacter ginsengisoli 2 Solitalea 1 genus 2 1242 0 929509 995 0 1240 1 species Solitalea canadensis 1649482 0 1427 1 genus 151895 0 1427 1 species Pseudopedobacter saltans no rank 1 1624 0 84568 1986952 0 1624 1 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 genus Mucilaginibacter 1 423349 0 2754 4 Mucilaginibacter gotjawali species 1108 1 1550579 0 no rank 994 1 2617802 0 0 1300914 1 994 species Mucilaginibacter sp. PAMC 26640 1 651 0 1234841 Mucilaginibacter sp. BJC16-A31 species 0 28453 6 5380 genus 1 Sphingobacterium 7 Sphingobacterium mizutaii species 1 994 0 1010 4 4379 0 2609468 no rank Sphingobacterium sp. B29 species 1283 1 1933220 0 species Sphingobacterium sp. ML3W 0 1538644 1 973 0 2003121 1 1019 species Sphingobacterium sp. G1-14 1 1104 0 743722 Sphingobacterium sp. 21 species 1 class Chitinophagia 16 1853228 0 9821 13 Chitinophagales 5 1 order 9805 12 1853229 0 family 1 8 Chitinophagaceae 563835 0 9800 11 genus 1769012 0 892 1 1 892 0 2636138 no rank species Arachidicoccus sp. BS20 0 1850526 1 892 649460 0 1538 2 genus 1 1 Filimonas 1 1537 0 477680 Filimonas lacunae species 1 1352 0 354354 genus 354356 0 1352 1 species Niastella koreensis Niabella 2 genus 1 3 2185 0 379899 Niabella soli species 1 1051 0 446683 species Niabella ginsenosidivorans 0 1176587 1 1132 genus 79328 0 3200 2 species Chitinophagaceae bacterium 13 2029983 0 1163 1 Chitinophaga pinensis species 2037 1 79329 0 genus 398041 0 625 1 1 625 0 1492898 Flavisolibacter tropicus species 200643 0 7562788 66 1 class 125 Bacteroidia 7556798 57 171549 0 565 Bacteroidales order 1 11552 6 2005520 0 family 3661 2 1784836 0 Fermentimonas 4 genus 1 Fermentimonas caenicola species 3657 1 1562970 0 0 307628 2 3303 genus 1 Petrimonas 4 species Petrimonas mucosa 1642646 0 3299 1 genus 1 Proteiniphilum 8 0 294702 2 4588 4580 1 1642647 0 Proteiniphilum saccharofermentans species 185291 0 1329 1 no rank Bacteroidales bacterium CF species 1 1329 0 1400053 4 4412003 0 333046 no rank 4411127 3 909656 0 genus species Bacteroides vulgatus 0 821 1 3671991 Bacteroides salanitronis species 1 97364 0 376805 0 357276 1 641772 species Bacteroides dorei 0 511434 1 876 genus Candidatus Azobacteroides pseudotrichonymphae species 876 1 511435 0 1 family 20 Barnesiellaceae 2005519 0 82555 3 0 397864 2 82535 1 genus 13 Barnesiella species Barnesiella viscericola 0 397865 1 82522 8231 4 171551 0 Porphyromonadaceae 9 family 1 genus 1 7 Porphyromonas 836 0 8222 3 1 7100 0 837 Porphyromonas gingivalis species 1 1115 0 28123 Porphyromonas asaccharolytica species 1 family 1 Odoribacteraceae 0 1853231 3 14435 3 Odoribacter 1 genus 14434 2 283168 0 1 14431 0 28118 Odoribacter splanchnicus species family 0 2005523 2 2943 4 Paludibacter 1 genus 2 2943 0 346096 2939 1 185300 0 Paludibacter propionicigenes species 77 Bacteroidaceae 1 family 11 2561088 0 815 Bacteroides 46604 genus 1 2561011 10 816 0 species Bacteroides ovatus 0 28116 1 637355 Bacteroides caecimuris species 457321 1 1796613 0 219790 1 817 0 Bacteroides fragilis species 0 818 1 561792 species Bacteroides thetaiotaomicron Bacteroides zoogleoformans species 81246 1 28119 0 1 211602 0 246787 Bacteroides cellulosilyticus species Bacteroides caccae species 1 99026 0 47678 28113 0 100756 1 species Bacteroides heparinolyticus species Bacteroides helcogenes 290053 0 145519 1 268143 7 2005525 0 Tannerellaceae 35 1 family genus 1 Parabacteroides 53 375288 0 253838 3 Parabacteroides distasonis species 1 69747 0 823 0 2649774 1 184038 no rank 0 2025876 1 184038 species Parabacteroides sp. CT06 1 genus Tannerella 6 0 195950 3 14270 0 28112 1 9987 species Tannerella forsythia 4277 1 2620507 0 no rank 1 4277 0 712710 Tannerella sp. oral taxon HOT-286 species 171552 0 125913 11 family 1 4 Prevotellaceae 125909 10 838 0 Prevotella 98 genus 1 species Prevotella fusca 0 589436 1 3055 species Prevotella intermedia 0 28131 1 99104 52227 0 4957 1 species Prevotella dentalis Prevotella enoeca species 2736 1 76123 0 28129 0 4062 1 species Prevotella denticola no rank 1 1288 0 2638335 species Prevotella sp. oral taxon 299 652716 0 1288 1 1177574 0 2476 1 species Prevotella jejuni 0 839 1 4915 species Prevotella ruminicola Prevotella melaninogenica species 3218 1 28132 0 0 171550 4 68041 1 family 11 Rikenellaceae 66738 2 239759 0 20 Alistipes 1 genus species Alistipes finegoldii 0 214856 1 66718 1292 1 1611681 0 genus species Mucinivorans hirudinis 0 1433126 1 1292 order 1 5 Marinilabiliales 0 1970189 8 5865 family 1970190 0 636 1 1 636 0 1970191 genus 636 1 1307839 0 Salinivirga cyanobacteriivorans species 2 1937 0 1573805 Marinifilaceae 1 family 1 2060722 0 1936 1 genus 1717717 0 1936 1 species Marinifilaceae bacterium SPP2 Prolixibacteraceae 2 1 family 2 1912 0 1471398 genus 0 1471399 1 1910 Draconibacterium orientale species 1 1910 0 1168034 0 558415 2 1375 1 family 1 Marinilabiliaceae genus 1374 1 1193324 0 Alkalitalea saponilacus species 1374 1 889453 0 0 1937959 4 1464 class 1936988 0 1464 4 1 order Saprospirales 2 family 1 1149 0 1937961 genus 0 2349 1 1149 0 2350 1 1149 species Haliscomenobacter hydrossis family 313 2 89374 0 1 genus Saprospira 1 0 1007 2 313 Saprospira grandis species 1 312 0 1008 phylum 0 1134404 6 1188 6 1188 0 795747 Ignavibacteria 1 class 1 5 1187 0 795748 2 Ignavibacteriales order 1 2 543 0 795749 family 795750 0 543 2 genus 1 Ignavibacterium 1 Ignavibacterium album species 542 1 591197 0 0 1334117 2 642 family 0 1134403 2 642 1 genus Melioribacter 7 1134405 0 635 1 species Melioribacter roseus phylum 22 6195 0 1090 6195 22 191410 0 Chlorobia 13 1 class Chlorobiales 65 1 order 21 6182 0 191411 191412 0 6117 20 1 family Chlorobiaceae 11 0 256319 4 1298 genus 1 17 Chlorobaculum species Chlorobaculum limnaeum 274537 0 515 1 274539 0 537 1 species Chlorobaculum parvum 1097 0 229 1 species Chlorobaculum tepidum 1422 5 1101 0 1 Prosthecochloris genus 1 no rank 987 3 2632826 0 293 1 281093 0 Prosthecochloris sp. GSB1 species 1974213 0 320 1 species Prosthecochloris sp. HL-130-GSB Prosthecochloris sp. CIB 2401 species 374 1 1868325 0 1102 0 434 1 species Prosthecochloris aestuarii 2884 8 274493 0 no rank Chlorobium 11 1 genus 1903 5 1091 0 species Chlorobium phaeobacteroides 1096 0 774 1 1094 0 322 1 species Chlorobium phaeovibrioides Chlorobium chlorochromatii species 385 1 337090 0 411 1 1092 0 Chlorobium limicola species 0 1099 3 981 genus 1 Pelodictyon 3 494 1 1100 0 Pelodictyon luteolum species 1 484 0 34090 Pelodictyon phaeoclathratiforme species 7 Chloroherpeton genus 1 502 2 100715 0 Chloroherpeton thalassium species 495 1 100716 0 0 142182 7 1621 phylum 219685 0 1621 7 1 class Gemmatimonadetes 17 order 1 55 Gemmatimonadales 0 219686 6 1604 Gemmatimonadaceae 10 family 1 1549 5 219687 0 703 3 173479 0 5 Gemmatimonas 1 genus Gemmatimonas phototrophica species 334 1 1379270 0 species Gemmatimonas aurantiaca 173480 0 364 1 1 836 0 1706036 genus Gemmatirosa kalamazoonesis species 836 1 861299 0 phylum 0 1930617 2 584 class 1 2 Calditrichae 0 1962850 2 584 582 1 1962852 0 order family 1962854 0 582 1 0 187144 1 582 genus 0 187145 1 582 species Caldithrix abyssi 0 2138240 1 165 phylum class 2138243 0 165 1 order 165 1 2138246 0 2138247 0 165 1 family 165 1 68335 0 genus species Coprothermobacter proteolyticus 35786 0 165 1 phylum 0 40117 14 3372 203693 0 3372 14 1 class 4 Nitrospira 3368 13 189778 0 Nitrospirales 8 1 order Nitrospiraceae 2 1 family 3360 12 189779 0 genus 1 Nitrospira 41 0 1234 5 2524 1325564 0 631 1 species Nitrospira japonica Nitrospira defluvii species 1 226 0 330214 936 1 42253 0 Nitrospira moscoviensis species Candidatus Nitrospira inopinata species 1 690 0 1715989 216 2 28261 0 Thermodesulfovibrio 1 1 genus 28262 0 215 1 species Thermodesulfovibrio yellowstonii 618 4 179 0 Leptospirillum 8 1 genus species group 0 261385 1 235 0 1660083 1 235 species Leptospirillum sp. Group II 'CF-1' 96 1 655606 0 species group Leptospirillum ferrooxidans species 96 1 180 0 0 261386 1 279 species group 1 279 0 178606 Leptospirillum ferriphilum species phylum 203691 0 19013 56 Spirochaetia 67 class 1 19013 56 203692 0 order 1643688 0 1809 9 Leptospiraceae 2 family 1 1809 9 170 0 1 Turneriella 1 genus 2 203 0 338321 Turneriella parva species 202 1 29510 0 0 171 6 1604 genus 1 Leptospira 3 174 0 361 1 species Leptospira borgpetersenii 436 1 173 0 Leptospira interrogans species 1 323 0 28452 Leptospira alstonii species species Leptospira biflexa 172 0 274 1 1 207 0 28183 Leptospira santarosai species 3454 7 1643686 0 Brachyspirales 1 1 order 3453 6 143786 0 269 Brachyspiraceae 1 family 268 Brachyspira 1 genus 5 3184 0 29521 0 159 1 672 species Brachyspira hyodysenteriae 1 523 0 84377 Brachyspira intermedia species Brachyspira pilosicoli species 1 973 0 52584 748 1 84378 0 Brachyspira murdochii species 102 Spirochaetales 1 order 39 13683 0 136 family 16 1520 0 1643685 64895 0 749 8 genus 1 Borreliella 24 Borreliella bissettii species 70 1 64897 0 Borreliella burgdorferi species 67 1 139 0 species Borreliella garinii 29519 0 119 1 species Borreliella afzelii 0 29518 1 225 species Borrelia mayonii 0 1674146 1 124 species Borreliella valaisiana 62088 0 58 1 species Borreliella bavariensis 664662 0 62 1 5 Borrelia 1 genus 8 771 0 138 species Borrelia duttonii 40834 0 108 1 species Borrelia miyamotoi 47466 0 184 1 81 1 141 0 Borrelia parkeri species 143 0 128 1 species Borrelia anserina 1 62 0 142 Borrelia turicatae species Borrelia recurrentis species 1 112 0 44449 Borrelia hermsii species 1 91 0 140 12061 22 137 0 Spirochaetaceae 85 1 family 4 2071 0 399320 Sphaerochaeta 1 1 genus Sphaerochaeta coccoides species 576 1 273376 0 0 1131703 1 834 species Sphaerochaeta globosa Sphaerochaeta pleomorpha species 1 660 0 1131707 1 genus 4 Sediminispirochaeta 0 1911556 2 301 Sediminispirochaeta smaragdinae species 1 297 0 55206 1 697 0 1616789 genus species Salinispira pacifica 0 1307761 1 697 genus 1 79 Treponema 0 157 12 7686 Treponema denticola species 1 656 0 158 0 150829 1 783 species Treponema azotonutricium 126 1 53435 0 Treponema paraluiscuniculi species 1519 1 167 0 Treponema succinifaciens species species Treponema pallidum 160 0 126 1 species Treponema primitia 88058 0 648 1 0 221027 1 1097 species Treponema putidum 409322 0 425 1 species Treponema pedis 0 215591 1 405 species Treponema caldarium 1 1107 0 2638727 no rank Treponema sp. OMZ 838 species 1 1107 0 1539298 Treponema brennaborense species 715 1 81028 0 genus 0 146 2 1221 1 422 0 154 Spirochaeta thermophila species species Spirochaeta africana 46355 0 799 1 phylum 470 4 200940 0 class 4 470 0 67799 order 0 188710 4 470 family 4 470 0 188711 1 88 0 444090 genus Caldimicrobium thiodismutans species 1 88 0 1653476 genus 124 1 241192 0 Thermodesulfatator indicus species 124 1 171695 0 genus 0 1740 2 258 1 93 0 1741 Thermodesulfobacterium commune species Thermodesulfobacterium geofontis species 165 1 1295609 0 32066 0 10639 23 phylum 23 10639 0 203490 Fusobacteriia 8 1 class 203491 0 10631 22 1 order 14 Fusobacteriales family 1 Fusobacteriaceae 8 0 203492 12 7372 848 0 6874 9 1 genus Fusobacterium 7 Fusobacterium hwasookii species 1 642 0 1583098 species Fusobacterium periodonticum 860 0 1371 1 1 293 0 859 Fusobacterium necrophorum species Fusobacterium mortiferum species 1 422 0 850 0 856 1 926 species Fusobacterium varium 657 1 861 0 Fusobacterium ulcerans species species Fusobacterium gonidiaformans 0 849 1 352 2204 1 851 0 Fusobacterium nucleatum species 167639 0 490 2 1 genus 1 Ilyobacter Ilyobacter polytropus species 1 489 0 167642 9 3245 0 1129771 Leptotrichiaceae 42 family 1 genus 32068 0 677 1 species Sebaldella termitidis 826 0 677 1 genus 34104 0 340 1 0 34105 1 340 species Streptobacillus moniliformis 32067 0 1922 5 1 genus Leptotrichia 2 503 1 40542 0 Leptotrichia buccalis species no rank 3 1417 0 2633022 Leptotrichia sp. oral taxon 847 species 1 310 0 1785996 Leptotrichia sp. oral taxon 498 species 1 566 0 712368 0 712357 1 541 species Leptotrichia sp. oral taxon 212 genus 168808 0 264 1 Sneathia amnii species 1 264 0 187101 Elusimicrobia 2 phylum 1 7 1093 0 74152 no rank 0 99260 1 290 0 167965 1 290 species uncultured Termite group 1 bacterium 0 641853 2 155 1 class Elusimicrobia 1 order 641854 0 154 1 family 154 1 641876 0 genus 1 154 0 423604 species Elusimicrobium minutum 423605 0 154 1 3 646 0 447830 class 0 1783344 3 646 order 1 Endomicrobiales 3 family 1783343 0 643 2 genus 2 643 0 1408194 Candidatus Endomicrobium trichonymphae species 294 1 1408204 0 Endomicrobium proavitum species 1 349 0 1408281 1648 2873038 0 1783272 clade 0 201174 628 336766 1 phylum Actinobacteria 42 class 1 87 Coriobacteriia 0 84998 29 29725 1643822 0 18026 15 1 order 141 Eggerthellales 1 family Eggerthellaceae 3153 0 1643826 14 17885 807 1 1981050 0 genus 0 1944646 1 807 species Phoenicibacter massiliensis genus 1083 1 79603 0 Denitrobacterium detoxificans species 1 1083 0 79604 Cryptobacterium 1 genus 1 386 2 84162 0 Cryptobacterium curtum species 385 1 84163 0 genus 0 447020 1 2469 species Adlercreutzia equolifaciens 446660 0 2469 1 genus 1 74 Eggerthella 0 84111 3 4796 0 2648737 1 911 no rank 0 502558 1 911 species Eggerthella sp. YY7918 species Eggerthella lenta 84112 0 3811 1 genus 1 Gordonibacter 26 644652 0 3661 3 Gordonibacter urolithinfaciens species 2062 1 1335613 0 1841863 0 1573 1 species Gordonibacter massiliensis Slackia 3 1 genus 1530 2 84108 0 species Slackia heliotrinireducens 84110 0 1527 1 0 84999 13 11612 order 1 Coriobacteriales 117 Atopobiaceae 33 1 family 5244 6 1643824 0 genus 1 Olsenella 76 0 133925 4 4595 133926 0 1476 1 species Olsenella uli 1 2273 0 1805478 Olsenella sp. Marseille-P2300 species no rank 2638792 0 770 1 770 1 712411 0 Olsenella sp. oral taxon 807 species 2767353 0 616 1 genus species Atopobium parvulum 0 1382 1 616 family 1 Coriobacteriaceae 240 84107 0 6251 6 3957 2 102106 0 134 Collinsella genus 1 74426 0 3823 1 species Collinsella aerofaciens 2 768 0 33870 4 Coriobacterium genus 1 1 764 0 33871 Coriobacterium glomerans species 1286 1 84113 0 no rank 1 1286 0 1531429 Coriobacteriaceae bacterium 68-1-3 species 6 601 0 84995 Rubrobacteria 3 class 1 order 1 Rubrobacterales 29 0 84996 5 598 0 84997 4 569 family 1 3 Rubrobacteraceae 566 3 42255 0 17 Rubrobacter genus 1 113 1 42256 0 Rubrobacter radiotolerans species 0 49319 1 436 species Rubrobacter xylanophilus class 0 84992 3 484 order 1 Acidimicrobiales 6 84993 0 484 3 1 382 0 2448023 family 0 682522 1 382 genus 467094 0 382 1 species Ilumatobacter coccineus 96 1 84994 0 family genus 96 1 53634 0 53635 0 96 1 species Acidimicrobium ferrooxidans no rank 4 425 0 1752188 species Actinobacteria bacterium IMCC25003 0 1848255 1 95 Actinobacteria bacterium IMCC26103 species 1 139 0 1848756 species Actinobacteria bacterium IMCC26077 0 1848755 1 30 species Actinobacteria bacterium IMCC19121 0 1848754 1 161 581 305049 0 1760 1488 Actinobacteria 1 class 1 order Micrococcales 311 0 85006 135 34790 16316 38 1268 0 Micrococcaceae 547 family 1 1 145 0 1645 genus 145 1 1646 0 Renibacterium salmoninarum species 116 Arthrobacter genus 1 15 6795 0 1663 species Arthrobacter alpinus 656366 0 777 1 no rank 5340 12 235627 0 2020486 0 525 1 species Arthrobacter sp. YN Arthrobacter sp. PAMC 25486 species 1 498 0 1494608 498 1 1849032 0 Arthrobacter sp. U41 species 0 1704044 1 560 species Arthrobacter sp. ERGS1:01 296 1 1771959 0 Arthrobacter sp. ATCC 21022 species species Arthrobacter sp. Rue61a 0 1118963 1 302 species Arthrobacter sp. YC-RL1 1652545 0 516 1 480 1 2079227 0 Arthrobacter sp. PGP41 species 466 1 1690248 0 Arthrobacter sp. LS16 species species Arthrobacter sp. ZXY-2 0 1806905 1 349 Arthrobacter sp. FB24 species 1 458 0 290399 Arthrobacter sp. QXT-31 species 392 1 1357915 0 Arthrobacter crystallopoietes species 562 1 37928 0 genus 0 2078575 1 340 species Arthrobacter sp. IHBB 11108 0 1618207 1 340 6 Sinomonas 1 genus 2 398 0 596707 species Sinomonas atrocyanea 0 37927 1 392 Glutamicibacter 18 1 genus 689 2 1742989 0 0 256701 1 671 species Glutamicibacter arilaitensis genus 1 1 Neomicrococcus 1868332 0 232 2 Neomicrococcus aestuarii species 231 1 556325 0 14 Rothia genus 1 3880 3 32207 0 species Rothia dentocariosa 0 2047 1 302 0 43675 1 3564 species Rothia mucilaginosa 367 2 1269 0 3 Micrococcus 1 genus 1 364 0 1270 Micrococcus luteus species 336 1 1742992 0 genus Paenarthrobacter aurescens species 336 1 43663 0 57493 0 862 4 1 genus 10 Kocuria species Kocuria rhizophila 0 72000 1 309 species Kocuria flava 0 446860 1 288 1 255 0 71999 Kocuria palustris species genus 1 28 Pseudarthrobacter 0 1742993 4 1725 1 672 0 121292 Pseudarthrobacter sulfonivorans species 576 1 85085 0 Pseudarthrobacter chlorophenolicus species 1 449 0 361575 Pseudarthrobacter phenanthrenivorans species 1 family Dermacoccaceae 21 0 145357 6 953 Luteipulveratus 2 genus 1 2 242 0 745364 Luteipulveratus mongoliensis species 240 1 571913 0 57495 0 311 1 genus Dermacoccus nishinomiyaensis species 1 311 0 1274 Kytococcus 7 genus 1 379 2 57499 0 Kytococcus sedentarius species 372 1 1276 0 3 458 0 85019 2 Brevibacteriaceae family 1 6 Brevibacterium 1 genus 2 456 0 1696 species Brevibacterium linens 1703 0 450 1 family 1 1 Dermatophilaceae 85018 0 195 3 1 genus 11 Dermatophilus 1862 0 194 2 1 183 0 1863 Dermatophilus congolensis species Intrasporangiaceae 15 1 family 1430 9 85021 0 1 genus 3 Intrasporangium 0 53357 2 228 species Intrasporangium calvum 53358 0 225 1 4 Janibacter genus 1 287 2 53457 0 283 1 857417 0 Janibacter indicus species 0 265976 2 544 1 genus Serinicoccus 1 1 543 0 1758689 Serinicoccus sp. JLT9 species 2 356 0 267408 2 Arsenicicoccus 1 genus no rank 0 2663846 1 354 species Arsenicicoccus sp. oral taxon 190 1658671 0 354 1 Sanguibacteraceae 1 1 family 347 3 145360 0 genus 1 Sanguibacter 3 0 60919 2 346 0 60920 1 343 species Sanguibacter keddieii 9 1508 0 85017 Promicromonosporaceae 45 family 1 2 Xylanimonas 1 genus 407 2 186188 0 1 405 0 186189 Xylanimonas cellulosilytica species 3 606 0 254250 10 Isoptericola genus 1 1 243 0 139208 Isoptericola variabilis species 1 353 0 372663 Isoptericola dokdonensis species Cellulosimicrobium 4 1 genus 450 3 157920 0 0 2624466 1 260 no rank 260 1 1980001 0 Cellulosimicrobium sp. TH-20 species Cellulosimicrobium cellulans species 1 186 0 1710 1 108 0 577468 no rank 108 1 2038 0 genus Tropheryma whipplei species 108 1 2039 0 Dermabacteraceae 24 family 1 10 2532 0 85020 164 2 472568 0 Devriesea 3 1 genus 472569 0 161 1 species Devriesea agamarum 247 1 36739 0 genus 247 1 1630135 0 Dermabacter vaginalis species genus 1 53 Brachybacterium 43668 0 2097 6 0 1331682 1 299 species Brachybacterium ginsengisoli Brachybacterium sp. VR2415 species 370 1 2017485 0 species Brachybacterium faecium 43669 0 479 1 no rank 428 1 2623841 0 428 1 1903186 0 Brachybacterium sp. P6-10-X1 species Brachybacterium sp. VM2412 species 1 468 0 2017484 family 1 85 Microbacteriaceae 0 85023 41 9132 genus 1 218 0 337004 0 279828 1 218 species Microcella alkaliphila genus 863 1 110932 0 863 1 1575 0 Leifsonia xyli species genus 1 Agromyces 6 0 33877 2 307 1 301 0 453304 Agromyces aureus species genus 0 1434032 1 61 species Pontimonas salivibrio 0 1159327 1 61 447237 0 208 1 genus no rank 1 208 0 2626248 Frondihabitans sp. PAMC 28766 species 208 1 1795630 0 1 genus 56 Microbacterium 33882 0 3402 14 300019 0 234 1 species Microbacterium paludicola species Microbacterium chocolatum 84292 0 186 1 Microbacterium testaceum species 1 206 0 2033 1 233 0 162426 Microbacterium hominis species 1 264 0 36805 Microbacterium aurum species 2609290 0 2223 8 no rank 0 2103230 1 422 species Microbacterium sp. str. 'China' 1 326 0 1714373 Microbacterium sp. No. 7 species species Microbacterium sp. 1.5R 0 1916917 1 166 species Microbacterium sp. XT11 0 367477 1 213 1906742 0 232 1 species Microbacterium sp. BH-3-3-3 1 413 0 1795053 Microbacterium sp. PAMC 28756 species species Microbacterium sp. TPU 3598 0 1938334 1 262 0 1696072 1 189 species Microbacterium sp. CGR1 genus 1 120 0 1705353 708131 0 120 1 species Aurantimicrobium minutum 4 791 0 2034 Curtobacterium 6 1 genus 69373 0 327 1 species Curtobacterium pusillum 2 458 0 257496 no rank 203 1 1561023 0 Curtobacterium sp. MR_MD2014 species 0 1905847 1 255 species Curtobacterium sp. BH-2-1-1 518733 0 281 1 genus 281 1 412690 0 Microterricola viridarii species 0 33886 2 293 genus 1 126 0 145458 Rathayibacter toxicus species Rathayibacter tritici species 167 1 33888 0 1 genus 109 Clavibacter 0 1573 6 1111 5 1002 0 28447 Clavibacter michiganensis 179 species 1 Clavibacter sepedonicus subspecies 187 1 31964 0 33014 0 214 1 subspecies Clavibacter insidiosus 31963 0 200 1 subspecies Clavibacter nebraskensis 1874630 0 222 1 subspecies Clavibacter capsici 0 1655488 2 257 no rank clade 0 1655489 2 257 genus 257 2 529883 0 Rhodoluna lacicola species 84 1 529884 0 173 1 535712 0 Candidatus Rhodoluna planktonica species genus 1 Cryobacterium 6 69578 0 900 3 species Cryobacterium arcticum 0 670052 1 420 0 2649013 1 474 no rank 474 1 1978566 0 Cryobacterium sp. LW097 species 235 1 1759331 0 genus species Cnuibacter physcomitrellae 0 1619308 1 235 5 Beutenbergiaceae family 1 3 308 0 125316 2 303 0 84756 29 Beutenbergia 1 genus species Beutenbergia cavernae 84757 0 274 1 1 Jonesiaceae family 1 83 2 85022 0 genus 1 82 0 43673 Jonesia denitrificans species 1 82 0 43674 85016 0 1109 6 1 family 8 Cellulomonadaceae 0 1707 5 1101 genus 1 27 Cellulomonas no rank 1 156 0 2620175 species Cellulomonas sp. PSBB021 0 2003551 1 156 Cellulomonas flavigena species 326 1 1711 0 Cellulomonas fimi species 292 1 1708 0 0 11 1 300 species Cellulomonas gilvus 85004 0 126688 24 1 order 34 Bifidobacteriales 1 family Bifidobacteriaceae 2535 31953 0 126654 23 123047 19 1678 0 543 Bifidobacterium genus 1 Bifidobacterium scardovii species 1 1076 0 158787 28025 0 799 1 species Bifidobacterium animalis 1425 1 28026 0 Bifidobacterium pseudocatenulatum species 0 33905 1 598 species Bifidobacterium thermophilum Bifidobacterium adolescentis species 1 1329 0 1680 species Bifidobacterium dentium 0 1689 1 770 species Bifidobacterium longum 0 216816 1 92008 species Bifidobacterium angulatum 0 1683 1 1002 1 236 0 1687 Bifidobacterium coryneforme species 543 1 35760 0 Bifidobacterium choerinum species 1686 0 2266 2 1 species Bifidobacterium catenulatum 830 Bifidobacterium kashiwanohense subspecies 1 1436 0 630129 Bifidobacterium indicum species 276 1 1691 0 1684 0 371 1 species Bifidobacterium asteroides 638619 0 387 1 species Bifidobacterium actinocoloniiforme species Bifidobacterium bifidum 0 1681 1 7820 1 10711 0 1685 Bifidobacterium breve species species Bifidobacterium pseudolongum 1694 0 887 1 0 2701 1 469 genus 0 2702 1 469 species Gardnerella vaginalis genus 404 1 196082 0 species Parascardovia denticolens 0 78258 1 404 199 1 196081 0 genus Scardovia inopinata species 1 199 0 78259 0 1643818 2 359 no rank 0 147067 2 359 genus 1 Thermobispora 2 2006 0 357 1 species Thermobispora bispora 85013 0 1628 7 1 order 9 Frankiales 1 family Frankiaceae 14 74712 0 1619 6 5 1605 0 1854 29 Frankia 1 genus no rank 476 1 2632575 0 0 298653 1 476 species Frankia sp. EAN1pec Frankia inefficax species 460 1 298654 0 1 385 0 1859 Frankia alni species 1 255 0 106370 Frankia casuarinae species 82 43071 0 85011 110 Streptomycetales 1 order 2062 0 42961 81 1 family Streptomycetaceae 209 75 40158 0 1883 Streptomyces 1341 genus 1 448 1 1935 0 Streptomyces violaceoruber species 1 464 0 38300 Streptomyces pristinaespiralis species Streptomyces parvulus species 1 668 0 146923 species Streptomyces alboflavus 67267 0 491 1 species Streptomyces pluripotens 1355015 0 445 1 0 92644 1 490 species Streptomyces malaysiensis species Streptomyces autolyticus 0 75293 1 521 species Streptomyces cattleya 29303 0 626 1 Streptomyces rubrolavendulae species 316 1 285473 0 1 423 0 193462 Streptomyces niveus species 1 665 0 1915 Streptomyces lincolnensis species 385 1 33903 0 Streptomyces avermitilis species 1 392 0 1437453 Streptomyces leeuwenhoekii species Streptomyces venezuelae species 1 877 0 54571 1912 0 1441 1 species Streptomyces hygroscopicus species Streptomyces albulus 68570 0 485 1 Streptomyces peucetius species 301 1 1950 0 1 456 0 1969 Streptomyces chartreusis species 0 1616117 1 455 species Streptomyces formicae species Streptomyces alfalfae 1642299 0 574 1 species Streptomyces glaucescens 0 1907 1 437 species Streptomyces scabiei 0 1930 1 542 1 400 0 553510 Streptomyces gilvosporeus species species Streptomyces violaceusniger 68280 0 738 1 species Streptomyces lavendulae 0 1914 1 407 Streptomyces puniciscabiei species 1 671 0 164348 1901 0 575 1 species Streptomyces clavuligerus 1 1277 0 47763 Streptomyces lydicus species Streptomyces albireticuli species 504 1 1940 0 no rank 11241 24 2593676 0 2094021 0 477 1 species Streptomyces sp. WAC00288 476 1 465541 0 Streptomyces sp. Mg1 species 591 1 2059884 0 Streptomyces sp. CMB-StM0423 species Streptomyces sp. MOE7 species 450 1 1961713 0 369 1 234612 0 Streptomyces sp. TN58 species 594 1 1495638 0 Streptomyces sp. M56 species 1964449 0 505 1 species Streptomyces sp. 3211 species Streptomyces sp. fd1-xmd 1812480 0 434 1 334 1 1837283 0 Streptomyces sp. S8 species Streptomyces sp. P3 species 569 1 2135430 0 517 1 1725411 0 Streptomyces sp. CdTB01 species 0 1972846 1 558 species Streptomyces sp. Sge12 1 377 0 1751294 Streptomyces sp. 4F species 1 312 0 1649184 Streptomyces sp. CFMR 7 species species Streptomyces sp. PAMC 26508 0 1265601 1 455 560 1 444103 0 Streptomyces sp. CNQ-509 species species Streptomyces sp. SAT1 0 1849967 1 523 species Streptomyces sp. SirexAA-E 862751 0 270 1 Streptomyces sp. CCM_MD2014 species 345 1 1561022 0 species Streptomyces sp. Tue 6075 1661694 0 363 1 Streptomyces sp. FR-008 species 1 466 0 206662 1262452 0 654 1 species Streptomyces sp. 769 0 1984801 1 274 species Streptomyces sp. CLI2509 species Streptomyces sp. RTd22 0 1841249 1 768 species group 1477431 0 935 2 563 1 1902 0 Streptomyces coelicolor species species Streptomyces sampsonii 0 42239 1 372 Streptomyces sp. XZHG99 species 1 488 0 2049881 42684 0 454 1 species Streptomyces collinus species Streptomyces pactum 0 68249 1 1066 558 1 68214 0 Streptomyces griseochromogenes species 0 1889 1 351 species Streptomyces ambofaciens 1 549 0 362257 Streptomyces vietnamensis species species group 745 2 629295 0 1 423 0 1482596 species subgroup species Streptomyces griseus 0 1911 1 423 species subgroup 0 1482558 1 322 1908 0 322 1 species Streptomyces globisporus 324 1 1169025 0 Streptomyces pratensis species 1888 0 958 1 species Streptomyces albus 1971 0 497 1 species Streptomyces noursei Streptomyces cyaneogriseus species 1 526 0 68192 Streptomyces xiamenensis species 607 1 408015 0 Streptomyces bingchenggensis species 888 1 379067 0 species Streptomyces lividans 0 1916 1 454 Streptomyces reticuli species 1 558 0 1926 0 1038928 1 299 species Streptomyces xinghaiensis 68202 0 324 1 species Streptomyces fulvissimus species Streptomyces sp. S10(2016) 0 1783515 1 521 1 genus 14 Kitasatospora 0 2063 5 2594 643 1 2066 0 Kitasatospora setae species Kitasatospora albolonga species 406 1 68173 0 species Kitasatospora aureofaciens 0 1894 1 771 no rank 760 1 2633591 0 1 760 0 2018025 Kitasatospora sp. MMS16-BH015 species 15 5078 0 85012 27 Streptosporangiales 1 order 2225 5 2004 0 Streptosporangiaceae 11 1 family Streptosporangium 8 genus 1 2 680 0 2000 Streptosporangium roseum species 1 672 0 2001 8 Nonomuraea 1 genus 1534 2 83681 0 1 1526 0 2593643 no rank Nonomuraea sp. ATCC 55076 species 1526 1 1909395 0 83676 0 1889 6 1 family 23 Nocardiopsaceae genus 1 28 Nocardiopsis 0 2013 4 1551 species Nocardiopsis alba 53437 0 352 1 0 2014 1 570 species Nocardiopsis dassonvillei species Nocardiopsis gilva 280236 0 601 1 genus 83677 0 315 1 0 2021 1 315 species Thermobifida fusca 4 Thermomonosporaceae family 1 937 3 2012 0 12 Thermomonospora 1 genus 2 933 0 2019 921 1 2020 0 Thermomonospora curvata species Geodermatophilales 2 order 1 1163 7 1643682 0 85030 0 1161 6 family 1 9 Geodermatophilaceae 1860 0 423 2 1 genus 8 Geodermatophilus Geodermatophilus obscurus species 1 415 0 1861 1 genus Modestobacter 2 88138 0 457 2 1 455 0 477641 Modestobacter marinus species 38501 0 272 1 genus species Blastococcus saxobsidens 138336 0 272 1 order 392 3 622450 0 392 3 622451 0 4 Actinopolysporaceae 1 family 2 388 0 1849 Actinopolyspora 1 1 genus 387 1 414996 0 Actinopolyspora erythraea species order 1 Glycomycetales 3 0 85014 4 705 3 702 0 85034 Glycomycetaceae 32 1 family 1 Stackebrandtia genus 1 670 2 283810 0 species Stackebrandtia nassauensis 283811 0 669 1 12 1027 0 2039638 2 Candidatus Nanopelagicales order 1 family 11 1025 0 2162846 7 846 0 622681 4 Candidatus Planktophila 1 genus species Candidatus Planktophila vernalis 1884907 0 129 1 species Candidatus Planktophila versatilis 0 1884905 1 207 0 1884904 1 90 species Candidatus Planktophila sulfonica 1 40 0 573600 Candidatus Planktophila limnetica species 201 1 1884914 0 Candidatus Planktophila dulcis species Candidatus Planktophila lacus species 175 1 1884913 0 1 Candidatus Nanopelagicus genus 1 179 4 2039639 0 Candidatus Nanopelagicus limnes species 42 1 1884634 0 Candidatus Nanopelagicus hibericus species 1 66 0 1884915 1884916 0 70 1 species Candidatus Nanopelagicus abundans order 3 105 0 1643683 85032 0 105 3 family 1 1 Acidothermaceae 1 genus 2 Acidothermus 0 28048 2 104 Acidothermus cellulolyticus species 102 1 28049 0 no rank 1 87 0 52018 species Actinobacteria bacterium IMCC26256 0 1650658 1 87 order 3 368 0 622452 family 1 18 Kineosporiaceae 83778 0 368 3 genus 1 1 Kineococcus 33981 0 350 2 131568 0 349 1 species Kineococcus radiotolerans order 0 414714 3 962 0 414877 3 962 1 family Catenulisporaceae 10 genus 1 Catenulispora 8 414878 0 952 2 species Catenulispora acidiphila 0 304895 1 944 6944 20 85008 0 Micromonosporales 5 order 1 6939 19 28056 0 67 Micromonosporaceae 1 family 0 84593 1 1 genus Verrucosispora 1810 4 673534 0 Plantactinospora 31 1 genus no rank 0 2631981 3 1779 Plantactinospora sp. KBS50 species 690 1 2024580 0 1 539 0 2108470 Plantactinospora sp. BC1 species species Plantactinospora sp. BB1 0 2071627 1 550 1 genus Micromonospora 15 1873 0 1691 4 Micromonospora aurantiaca species 505 1 47850 0 509 1 1003110 0 Verrucosispora maris species no rank 0 2617518 1 662 species Micromonospora sp. L5 648999 0 662 1 genus 1 Actinoplanes 35 0 1865 6 2686 196914 0 484 1 species Actinoplanes friuliensis 1580 3 2626549 0 no rank 1 467 0 134676 Actinoplanes sp. SE50/110 species 467 1 2033844 0 Actinoplanes sp. SE50 species species Actinoplanes sp. N902-109 0 649831 1 646 0 1866 1 587 species Actinoplanes missouriensis 0 168694 3 684 1 genus 24 Salinispora Salinispora tropica species 1 353 0 168695 species Salinispora arenicola 0 168697 1 307 Pseudonocardiales 21 1 order 15433 42 85010 0 Pseudonocardiaceae 164 family 1 15412 41 2070 0 0 1851 2 232 genus 1 3 Saccharomonospora species Saccharomonospora viridis 0 1852 1 229 375 2 142577 0 Prauserella 3 1 genus 0 530584 1 372 species Prauserella marina 1 genus Lentzea 3 165301 0 763 2 species Lentzea guizhouensis 0 1586287 1 760 909 2 43356 0 Kutzneria 3 genus 1 1 906 0 43357 Kutzneria albida species 1847 0 3034 8 genus 1 Pseudonocardia 86 0 240495 1 549 species Pseudonocardia dioxanivorans no rank 0 2619320 6 2399 species Pseudonocardia sp. EC080619-01 0 1096856 1 424 Pseudonocardia sp. HH130630-07 species 455 1 1690815 0 species Pseudonocardia sp. EC080625-04 0 1096868 1 327 426 1 1688404 0 Pseudonocardia sp. EC080610-09 species species Pseudonocardia sp. HH130629-09 0 1641402 1 415 445576 0 352 1 species Pseudonocardia sp. AL041005-10 1558 3 40566 0 43 Actinosynnema 1 genus Actinosynnema pretiosum species 726 1 42197 0 40567 0 789 1 species Actinosynnema mirum 1 genus 13 Saccharothrix 2071 0 684 2 Saccharothrix espanaensis species 671 1 103731 0 0 2029 2 589 1 genus Kibdelosporangium 1 species Kibdelosporangium phytohabitans 0 860235 1 588 7 3541 0 1813 29 Amycolatopsis genus 1 2 1023 0 2618356 no rank species Amycolatopsis sp. AA4 1896961 0 536 1 0 1911175 1 487 species Amycolatopsis sp. BJA-103 species Amycolatopsis mediterranei 0 33910 1 649 1814 0 487 1 species Amycolatopsis methanolica 0 31958 1 870 species Amycolatopsis orientalis 1 483 0 208439 Amycolatopsis japonica species 674734 0 433 2 1 genus Alloactinosynnema 6 no rank 427 1 2636053 0 427 1 1653480 0 Alloactinosynnema sp. L-07 species 757 2 1835 0 4 Saccharopolyspora genus 1 1 753 0 1836 Saccharopolyspora erythraea species 6 2373 0 65496 51 Actinoalloteichus 1 genus species Actinoalloteichus sp. ADI127-7 0 1612552 1 520 402 1 340345 0 Actinoalloteichus hymeniacidonis species 2644606 0 955 2 no rank species Actinoalloteichus sp. GBA129-24 0 1612551 1 480 Actinoalloteichus sp. AHMU CJ021 species 475 1 2072503 0 Actinoalloteichus hoggarensis species 1 445 0 1470176 2037 0 6773 20 1 order Actinomycetales 4 Actinomycetaceae 1115 1 family 6769 19 2049 0 genus 558 1 2529408 0 558 1 52773 0 Actinomyces meyeri species 1 genus Trueperella 1 0 1069494 2 558 species Trueperella pyogenes 1661 0 557 1 1 Actinotignum 1 genus 270 2 1653174 0 59505 0 269 1 species Actinotignum schaalii 3281 9 1654 0 44 Actinomyces genus 1 281 1 1960083 0 Actinomyces gaoshouyii species 544580 0 492 1 species Actinomyces oris species Actinomyces pacaensis 0 1852377 1 617 Actinomyces radicidentis species 1 561 0 111015 Actinomyces sp. VUL4_3 species 1 96 0 1912795 no rank 2609248 0 1190 3 Actinomyces sp. oral taxon 897 species 446 1 2081702 0 Actinomyces sp. Chiba101 species 280 1 1851395 0 species Actinomyces sp. oral taxon 414 0 712122 1 464 1 genus 2 Arcanobacterium 28263 0 130 2 Arcanobacterium haemolyticum species 1 128 0 28264 2 857 0 2050 32 Mobiluncus genus 1 species Mobiluncus curtisii 0 2051 1 825 4 470 0 1643684 3 Nakamurellales 1 order 3 Nakamurellaceae family 1 3 467 0 85031 Nakamurella 3 1 genus 2 464 0 53460 53461 0 461 1 species Nakamurella multipartita 34 8679 0 85009 24 Propionibacteriales order 1 Nocardioidaceae 75 1 family 2896 13 85015 0 2 Kribbella genus 1 314 2 182639 0 species Kribbella flavida 182640 0 312 1 370 2 2044 0 1 Pimelobacter 1 genus Pimelobacter simplex species 369 1 2045 0 genus 1 Aeromicrobium 2 2040 0 243 2 2041 0 241 1 species Aeromicrobium erythreum 1 genus 1 Micropruina 0 116071 2 451 75385 0 450 1 species Micropruina glycogenica 28 Nocardioides genus 1 4 1443 0 1839 Nocardioides dokdonensis species 431 1 450734 0 species Nocardioides sp. 78 2045452 0 607 1 0 2615069 1 377 no rank 196162 0 377 1 species Nocardioides sp. JS614 1 family 92 Propionibacteriaceae 31957 0 5759 20 2 800 0 1912215 Acidipropionibacterium 2 1 genus 1748 0 798 1 species Acidipropionibacterium acidipropionici 496 2 203133 0 Propionimicrobium 1 genus 1 2633994 0 495 1 no rank 1871034 0 495 1 species Propionimicrobium sp. Marseille-P3275 Cutibacterium 1 genus 1 4 1055 0 1912216 species Cutibacterium acnes 0 1747 1 358 0 33011 1 241 species Cutibacterium granulosum 0 33010 1 455 species Cutibacterium avidum genus 1 6 Microlunatus 29404 0 470 2 1 464 0 29405 Microlunatus phosphovorus species 0 72763 5 1702 genus 1 Tessaracoccus 5 species Tessaracoccus flavescens 0 399497 1 395 species Tessaracoccus aquimaris 0 1332264 1 449 no rank 1 431 0 2635419 species Tessaracoccus sp. T2.5-30 1909732 0 431 1 species Tessaracoccus flavus 1610493 0 422 1 genus 1 7 Propionibacterium 0 1743 3 856 181 1 2608905 0 no rank species Propionibacterium sp. oral taxon 193 671223 0 181 1 668 1 1744 0 Propionibacterium freudenreichii species genus 0 2801844 1 288 288 1 1750 0 Pseudopropionibacterium propionicum species 0 85007 159 48839 order 1 Corynebacteriales 220 0 1653 52 17907 family 1 84 Corynebacteriaceae 51 17823 0 1716 336 Corynebacterium genus 1 2 624 0 2624378 no rank 0 1487956 1 411 species Corynebacterium sp. ATCC 6931 0 702967 1 213 species Corynebacterium sp. NML98-0116 0 349751 1 334 species Corynebacterium marinum species Corynebacterium ureicelerivorans 0 401472 1 288 Corynebacterium frankenforstense species 423 1 1230998 0 species Corynebacterium singulare 161899 0 217 1 0 1408191 1 190 species Corynebacterium deserti species Corynebacterium callunae 1721 0 334 1 512 1 38305 0 Corynebacterium vitaeruminis species species Corynebacterium glutamicum 1718 0 528 1 1 240 0 187491 Corynebacterium glaucum species 1 300 0 203263 Corynebacterium aquilae species Corynebacterium variabile species 1 441 0 1727 1121358 0 413 1 species Corynebacterium doosanense 137 1 92706 0 [Brevibacterium] flavum species 390 1 152794 0 Corynebacterium efficiens species 355 1 169292 0 Corynebacterium aurimucosum species 1 261 0 65058 Corynebacterium ulcerans species 116 1 35755 0 Corynebacterium kutscheri species species Corynebacterium diphtheriae 1717 0 584 1 1 161 0 89154 Corynebacterium terpenotabidum species 0 571915 1 185 species Corynebacterium mustelae 0 136857 1 262 species Corynebacterium testudinoris species Corynebacterium stationis 0 1705 1 439 1072256 0 268 1 species Corynebacterium uterequi species Corynebacterium phocae 161895 0 230 1 Corynebacterium ammoniagenes species 357 1 1697 0 0 43771 1 266 species Corynebacterium urealyticum 1 444 0 191493 Corynebacterium sphenisci species 1 196 0 28028 Corynebacterium flavescens species species Corynebacterium humireducens 0 1223514 1 367 species Corynebacterium maris 0 575200 1 241 108486 0 701 1 species Corynebacterium falsenii Corynebacterium pseudotuberculosis species 286 1 1719 0 Corynebacterium epidermidicanis species 237 1 1050174 0 species Corynebacterium crudilactis 0 1652495 1 186 species Corynebacterium atypicum 191610 0 185 1 270 1 1404244 0 Corynebacterium glyciniphilum species Corynebacterium halotolerans species 1 448 0 225326 0 161896 1 304 species Corynebacterium camporealensis species Corynebacterium resistens 258224 0 583 1 species Corynebacterium striatum 43770 0 686 1 Corynebacterium lactis species 1 442 0 1231000 297 1 156978 0 Corynebacterium imitans species Corynebacterium kroppenstedtii species 1 163 0 161879 species Corynebacterium casei 160386 0 429 1 species Corynebacterium jeikeium 38289 0 993 1 0 35757 1 393 species Corynebacterium cystitidis species Corynebacterium argentoratense 0 42817 1 283 146827 0 498 1 species Corynebacterium simulans family 316606 0 153 2 genus 1 2 Segniliparus 286801 0 153 2 Segniliparus rotundus species 151 1 286802 0 family 1 Tsukamurellaceae 4 85028 0 551 4 Tsukamurella 6 genus 1 547 3 2060 0 Tsukamurella tyrosinosolvens species 230 1 57704 0 311 1 2061 0 Tsukamurella paurometabola species 1 family 41 Nocardiaceae 0 85025 31 10341 Nocardia 61 1 genus 4193 7 1817 0 760 1 37326 0 Nocardia brasiliensis species 0 135487 1 895 species Nocardia cyriacigeorgica 1 606 0 37329 Nocardia farcinica species species Nocardia nova 0 37330 1 416 775 1 37332 0 Nocardia seriolae species Nocardia terpenica species 680 1 455432 0 0 1827 23 6107 genus 1 Rhodococcus 121 Rhodococcus hoagii species 303 1 43767 0 Rhodococcus jostii species 1 307 0 132919 no rank 2563 12 192944 0 species Rhodococcus sp. YL-1 0 1045808 1 163 Rhodococcus sp. H-CA8f species 1 204 0 1727214 Rhodococcus sp. 2G species 161 1 1570939 0 0 1723645 1 123 species Rhodococcus sp. 008 Rhodococcus sp. WMMA185 species 1 145 0 679318 species Rhodococcus sp. BH4 1807790 0 149 1 1 258 0 1805827 Rhodococcus sp. MTM3W5.2 species 1 232 0 1653479 Rhodococcus sp. PBTS 2 species Rhodococcus sp. B7740 species 305 1 1564114 0 species Rhodococcus sp. PBTS 1 0 1653478 1 261 0 935199 1 206 species Rhodococcus sp. p52 species Rhodococcus sp. WB1 0 1033922 1 356 1833 0 250 1 species Rhodococcus erythropolis Rhodococcus qingshengii species 168 1 334542 0 species Rhodococcus aetherivorans 191292 0 356 1 0 37919 1 1077 species Rhodococcus opacus 1829 0 185 1 species Rhodococcus rhodochrous 204 1 1828 0 Rhodococcus fascians species 349 1 1830 0 Rhodococcus ruber species 0 103816 1 224 species Rhodococcus pyridinivorans 1 family Gordoniaceae 21 85026 0 2142 9 1 genus Gordonia 30 2053 0 2121 8 Gordonia iterans species 238 1 1004901 0 no rank 2657482 0 502 2 Gordonia sp. KTR9 species 1 240 0 337191 Gordonia sp. YC-JH1 species 1 262 0 2059875 314 1 2055 0 Gordonia terrae species 1 304 0 2054 Gordonia bronchialis species 0 84595 1 412 species Gordonia polyisoprenivorans 321 1 1136941 0 Gordonia phthalatica species 3 423 0 85029 family Dietzia 16 genus 1 3 423 0 37914 no rank 2617939 0 188 1 1 188 0 712270 Dietzia sp. oral taxon 368 species 499555 0 219 1 species Dietzia timorensis 697024 0 175 1 no rank genus 1847725 0 175 1 species Lawsonella clevelandensis 0 1528099 1 175 0 1762 56 16927 family 1 33 Mycobacteriaceae 13 5129 0 1866885 genus species Mycobacterium fortuitum 0 1766 1 340 species Mycobacterium smegmatis 0 1772 1 499 1 513 0 1791 Mycobacterium aurum species Mycobacterium vanbaalenii species 452 1 110539 0 1 471 0 758802 Mycobacterium litorale species Mycobacterium phlei species 1 513 0 1771 species Mycobacterium rhodesiae 0 36814 1 223 Mycobacterium vaccae species 433 1 1810 0 species Mycobacterium chubuense 1800 0 330 1 251 1 1795 0 Mycobacterium neoaurum species species Mycobacterium thermoresistibile 0 1797 1 469 1 276 0 134601 Mycobacterium goodii species Mycobacterium gilvum species 1 359 0 1804 1073531 0 603 2 genus 0 875328 1 329 species Mycobacterium sinense species Mycobacterium terrae 0 1788 1 274 34 9194 0 1763 695 Mycobacterium genus 1 species Mycobacterium ulcerans 0 1809 1 211 Mycobacterium marinum species 1 267 0 1781 species group 0 120793 8 2001 545 4 1767 0 Mycobacterium intracellulare 131 1 species subspecies Mycobacterium chimaera 0 222805 1 274 0 35617 1 84 subspecies Mycobacterium indicus pranii Mycobacterium yongonense subspecies 56 1 1203599 0 104 1 1138383 0 Mycobacterium paraintracellulare species 0 339268 1 373 species Mycobacterium colombiense 1 746 0 1764 Mycobacterium avium species 0 701042 1 233 species Mycobacterium marseillense 0 261524 1 189 species Mycobacterium liflandii species Mycobacterium haemophilum 0 29311 1 285 no rank 2642494 0 3641 13 Mycobacterium sp. QIA-37 species 232 1 1561223 0 Mycobacterium sp. NRRL B-3805 species 251 1 1570328 0 species Mycobacterium sp. EPa45 0 1545728 1 371 Mycobacterium sp. KMS species 193 1 189918 0 Mycobacterium sp. VKM Ac-1817D species 1 294 0 1273687 Mycobacterium sp. PYR15 species 1 387 0 2051552 species Mycobacterium sp. djl-10 0 1879023 1 446 0 212767 1 234 species Mycobacterium sp. JS623 Mycobacterium sp. WY10 species 1 350 0 1920667 1168287 0 45 1 species Mycobacterium sp. MOTT36Y 1682113 0 498 1 species Mycobacterium sp. YC-RL4 Mycobacterium sp. JLS species 1 175 0 164757 Mycobacterium sp. MCS species 165 1 164756 0 0 1768 1 439 species Mycobacterium kansasii 482462 0 352 1 species Mycobacterium dioxanotrophicus 236 1 2249310 0 species group 236 1 722731 0 Mycobacterium shigaense species 0 1769 1 152 species Mycobacterium leprae 4 726 0 77643 species group Mycobacterium canettii species 194 1 78331 0 0 1773 3 532 species 1 186 Mycobacterium tuberculosis Mycobacterium africanum biotype 1 172 0 33894 1765 0 174 1 biotype Mycobacterium bovis genus 697025 0 210 1 species Hoyosella subflava 639313 0 210 1 genus 1758 5 670516 0 1774 0 302 1 species Mycobacterium chelonae species Mycobacterium stephanolepidis 0 1520670 1 267 Mycobacterium saopaulense species 162 1 1578165 0 83262 0 229 1 species Mycobacterium immunogenum 36809 0 798 1 species Mycobacterium abscessus 2 Thermoleophilia class 1 4 440 0 1497346 1 order Solirubrobacterales 16 588673 0 438 3 0 320583 2 422 family genus 1 Conexibacter 4 191494 0 422 2 0 191495 1 418 species Conexibacter woesei 31693 142 1798711 0 clade 1 phylum Cyanobacteria 14 0 1117 142 31693 0 1983111 1 129 no rank 1 129 0 718217 cyanobacterium endosymbiont of Epithemia turgida species 1 class 12 Gloeobacteria 0 307596 6 957 order 1 Gloeobacterales 23 307595 0 945 5 8 Gloeobacteraceae family 1 4 922 0 1890422 0 33071 3 914 1 genus Gloeobacter 7 1416614 0 436 1 species Gloeobacter kilaueensis Gloeobacter violaceus species 471 1 33072 0 Chroococcidiopsidales 1 1 order 273 3 1890505 0 272 2 1890528 0 Chroococcidiopsidaceae 1 1 family genus 0 54298 1 271 species Chroococcidiopsis thermalis 0 54299 1 271 1 order Synechococcales 83 1890424 0 12634 58 0 1890438 6 1315 1 family 4 Leptolyngbyaceae 1 Leptolyngbya genus 1 5 1311 0 47251 1019 3 2650499 0 no rank 1 306 0 1752064 Leptolyngbya sp. NIES-3755 species 1 459 0 1080068 Leptolyngbya sp. O-77 species species Leptolyngbya sp. PCC 7376 111781 0 254 1 species Leptolyngbya boryana 0 1184 1 291 Merismopediaceae 3 1 family 1559 5 1890428 0 1 genus Synechocystis 12 0 1142 4 1556 no rank 2640012 0 1544 3 1 556 0 1147 Synechocystis sp. PCC 6714 species species Synechocystis sp. IPPAS B-1465 2116702 0 494 1 494 1 1148 0 Synechocystis sp. PCC 6803 species 1 family Prochloraceae 12 1213 0 1570 5 1218 0 1558 4 genus 1 Prochlorococcus 1 no rank 2627481 0 412 2 95 1 1501268 0 Prochlorococcus sp. MIT 0604 species 0 1501269 1 317 species Prochlorococcus sp. MIT 0801 Prochlorococcus marinus species 1145 1 1219 0 Pseudanabaenaceae 3 1 family 265 3 1890436 0 1152 0 262 2 1 genus 2 Pseudanabaena 0 2593292 1 260 no rank 1 260 0 82654 Pseudanabaena sp. PCC 7367 species family 1 Synechococcaceae 21 1890426 0 7324 33 2 Dactylococcopsis genus 1 2 112 0 13034 species Dactylococcopsis salina 0 292566 1 110 146785 0 143 1 genus Thermosynechococcus elongatus species 1 143 0 146786 genus 1 101 Synechococcus 0 1129 26 5465 Synechococcus elongatus species 1 226 0 32046 no rank 23 4993 0 2626047 1350461 0 232 1 species Synechococcus sp. UTEX 2973 species Synechococcus sp. PCC 7502 1173263 0 214 1 Synechococcus sp. CC9311 species 153 1 64471 0 0 110662 1 183 species Synechococcus sp. CC9605 0 195498 1 120 species Synechococcus sp. PCC 7117 Synechococcus sp. KORDI-52 species 1 288 0 585425 195248 0 208 1 species Synechococcus sp. PCC 8807 199 1 316278 0 Synechococcus sp. RCC307 species 0 321327 1 698 species Synechococcus sp. JA-3-3Ab species Synechococcus sp. NIES-970 1827144 0 123 1 Synechococcus sp. CC9902 species 113 1 316279 0 Synechococcus sp. WH 8102 species 1 199 0 84588 species Synechococcus sp. PCC 73109 0 374982 1 189 341 1 321332 0 Synechococcus sp. JA-2-3B'a(2-13) species species Synechococcus sp. PCC 7003 0 374981 1 198 1 165 0 32051 Synechococcus sp. WH 7803 species species Synechococcus sp. SynAce01 1916956 0 279 1 195253 0 134 1 species Synechococcus sp. PCC 6312 species Synechococcus sp. WH 8109 0 166314 1 259 1 110 0 32049 Synechococcus sp. PCC 7002 species species Synechococcus sp. KORDI-100 1280380 0 151 1 Synechococcus sp. KORDI-49 species 215 1 585423 0 species Synechococcus sp. WH 8103 29410 0 222 1 Synechococcus lividus species 1 145 0 33070 167375 0 1583 3 genus 1 Cyanobium 21 1 748 0 59930 Cyanobium gracile species 1 814 0 2627006 no rank 1851505 0 814 1 species Cyanobium sp. NIES-981 family 2303730 0 230 2 Halomicronema 2 genus 1 2 230 0 170610 1209493 0 228 1 species Halomicronema hongdechloris 3 288 0 1890429 3 Acaryochloridaceae family 1 1 Acaryochloris genus 1 285 2 155977 0 species Acaryochloris marina 0 155978 1 284 7644 36 1301283 0 subclass 1 order Oscillatoriales 26 0 1150 17 2915 0 1892251 2 426 1 family Coleofasciculaceae 1 1 425 0 63132 genus 425 1 2648775 0 no rank 425 1 1173025 0 Geitlerinema sp. PCC 7407 species family 1 225 0 1892255 225 1 241421 0 genus 1 225 0 241425 Crinalium epipsammum species 1 family 5 Oscillatoriaceae 1892254 0 1333 6 0 1155738 2 430 genus 1 Moorea 3 species Moorea producens 1155739 0 427 1 2 Oscillatoria genus 1 898 3 1158 0 Oscillatoria nigro-viridis species 516 1 482564 0 380 1 118323 0 Oscillatoria acuminata species 3 192 0 1892249 3 Cyanothecaceae 1 family 0 43988 2 189 1 genus Cyanothece 7 1 182 0 2649277 no rank Cyanothece sp. PCC 7425 species 182 1 395961 0 1 family Microcoleaceae 7 1892252 0 713 4 44471 0 261 1 genus no rank 261 1 2642155 0 1173027 0 261 1 species Microcoleus sp. PCC 7113 Trichodesmium 6 genus 1 445 2 1205 0 1 439 0 1206 Trichodesmium erythraeum species order 1 Chroococcales 8 1118 0 4729 19 Chroococcaceae 7 1 family 1597 6 1890464 0 0 268175 1 246 genus no rank 0 2648896 1 246 Chondrocystis sp. NIES-4102 species 246 1 2005460 0 247 1 102231 0 genus no rank 1 247 0 2623012 0 1173026 1 247 species Gloeocapsa sp. PCC 7428 3 1097 0 669357 3 Geminocystis genus 1 1094 2 2625037 0 no rank 1615909 0 419 1 species Geminocystis sp. NIES-3708 1 675 0 1617448 Geminocystis sp. NIES-3709 species family 0 1890452 1 627 genus 1 627 0 102234 379064 0 627 1 species Cyanobacterium aponinum family 821 3 1890449 0 1125 0 821 3 genus 1 1 Microcystis 0 2643300 1 330 no rank Microcystis sp. MC19 species 330 1 1967666 0 0 1126 1 490 species Microcystis aeruginosa 0 1890450 8 1676 family 1 Aphanothecaceae 1 230 1 92682 0 no rank genus 76023 0 230 1 230 1 2632878 0 no rank species Halothece sp. PCC 7418 65093 0 230 1 genus 1453359 0 199 1 species Candidatus Atelocyanobacterium thalassa 0 713887 1 199 743 2 28070 0 genus 443 1 2546359 0 species 443 1 497965 0 Cyanothece sp. PCC 7822 strain 2546356 0 300 1 species Cyanothece sp. PCC 7424 strain 1 300 0 65393 2 303 0 2546365 genus 0 2546366 2 303 species 395962 0 152 1 strain Cyanothece sp. PCC 8802 0 41431 1 151 strain Cyanothece sp. PCC 8801 genus 1 200 0 263510 200 1 2546360 0 species Cyanothece sp. ATCC 51142 strain 1 200 0 43989 0 52604 7 805 order Hyellaceae 3 family 1 3 182 0 1890500 Pleurocapsa 1 1 genus 179 2 44474 0 Pleurocapsa minor species 178 1 54308 0 0 1890498 4 623 family 1 Dermocarpellaceae 1 genus 1 4 Stanieria 102115 0 622 3 Stanieria cyanosphaera species 343 1 102116 0 no rank 1 275 0 2642663 Stanieria sp. NIES-3757 species 275 1 1807358 0 1 order 14 Nostocales 1161 0 9237 30 family 2661849 0 2683 8 1186 0 2683 8 genus 1 Calothrix 10 6 2283 0 2619626 no rank species Calothrix sp. 336/3 1337936 0 419 1 species Calothrix sp. NIES-3974 0 2005462 1 162 2005469 0 834 1 species Calothrix sp. NIES-4071 1954171 0 229 1 species Calothrix sp. NIES-2098 Calothrix sp. NIES-4101 species 1 393 0 2005461 species Calothrix sp. PCC 7507 0 99598 1 246 390 1 32054 0 Calothrix parietina species 1 family Nostocaceae 4 0 1162 17 5273 genus 0 264688 2 471 168 1 1164 0 Trichormus azollae species 1 303 0 264691 Trichormus variabilis species 0 1163 4 1232 genus 1 Anabaena 9 species Anabaena cylindrica 0 1165 1 520 0 2619674 2 703 no rank Anabaena sp. 90 species 295 1 46234 0 Anabaena sp. WA102 species 408 1 1647413 0 1 genus Nostoc 13 0 1177 10 3566 no rank 1925 7 2593658 0 species Nostoc sp. PCC 7120 0 103690 1 267 1 397 0 1261031 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species species Nostoc sp. PCC 7107 0 317936 1 206 1 314 0 1751286 Nostoc sp. NIES-3756 species species Nostoc sp. PCC 7524 28072 0 262 1 284 1 1618022 0 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 0 1869241 1 195 species Nostoc sp. CENA543 species Nostoc flagelliforme 0 1306274 1 1299 329 1 272131 0 Nostoc punctiforme species family 534 1 1185 0 373984 0 534 1 genus 0 2676603 1 534 no rank 373994 0 534 1 species Rivularia sp. PCC 7116 2 293 0 1892263 Hapalosiphonaceae 2 family 1 genus 291 1 1190 0 291 1 494603 0 no rank Fischerella sp. NIES-3754 species 1 291 0 1752063 1219117 0 440 1 no rank 1940762 0 440 1 species Nostocales cyanobacterium HT-58-2 43 7476 0 200795 phylum class 1 60 Ardenticatenia 0 1382928 5 1121 Ardenticatenales 12 1 order 1061 4 1382929 0 family 1 5 Ardenticatenaceae 0 1382930 3 1049 1044 2 1988031 0 Candidatus Promineofilum 3 1 genus 1806508 0 1041 1 species Candidatus Promineofilum breve 1 class Caldilineae 26 475962 0 439 5 413 4 475963 0 3 Caldilineales 1 order Caldilineaceae 4 family 1 410 3 475964 0 233191 0 406 2 genus 1 6 Caldilinea Caldilinea aerophila species 400 1 133453 0 0 292625 8 1533 class 1 4 Anaerolineae 1529 7 292629 0 Anaerolineales 7 1 order 3 Anaerolineaceae 1 family 1522 6 292628 0 no rank 677 1 1324991 0 1 677 0 1889813 Anaerolineaceae bacterium oral taxon 439 species 1 genus Brevefilum 1 2019482 0 239 2 1 238 0 1986204 Brevefilum fermentans species 0 233189 2 603 1 genus 5 Anaerolinea 1 598 0 167964 Anaerolinea thermophila species 7 Thermomicrobia 1 class 622 7 189775 0 0 85000 3 341 subclass 1 order Sphaerobacterales 7 0 85001 3 341 0 255728 2 334 suborder family 85002 0 334 2 1 genus 20 Sphaerobacter 0 2056 2 334 species Sphaerobacter thermophilus 0 2057 1 314 189776 0 274 3 order 1 Thermomicrobiales 2 0 189777 2 272 1 family 3 Thermomicrobiaceae genus 499 0 269 1 1 269 0 500 Thermomicrobium roseum species class 1 Dehalococcoidia 2 301297 0 2016 9 1 genus Dehalogenimonas 13 670486 0 937 3 species Dehalogenimonas formicexedens 1839801 0 402 1 1 522 0 552810 Dehalogenimonas lykanthroporepellens species 1202465 0 1077 5 order 1 3 Dehalococcoidales Dehalococcoidaceae 2 family 1 1074 4 1202464 0 0 61434 3 1072 genus 1 7 Dehalococcoides 1 972 0 61435 Dehalococcoides mccartyi species 237581 0 93 1 no rank 93 1 1522671 0 Dehalococcoides sp. UCH007 species 3 Chloroflexia class 1 1745 9 32061 0 Chloroflexales 5 order 1 1742 8 32064 0 suborder 4 936 0 1508594 family 936 4 1106 0 1107 0 936 4 1 genus 14 Chloroflexus 0 152260 1 250 species Chloroflexus aggregans 2 672 0 1108 Chloroflexus aurantiacus 336 1 species 1 336 0 480224 Chloroflexus sp. Y-400-fl strain suborder 1508595 0 801 3 family 1508635 0 801 3 Roseiflexus 3 1 genus 801 3 120961 0 no rank 1 433 0 2609473 433 1 357808 0 Roseiflexus sp. RS-1 species 0 120962 1 365 species Roseiflexus castenholzii phylum 1297 0 10781 35 Deinococci 107 class 1 35 10781 0 188787 order 1 99 Thermales 0 68933 17 3194 family 1 11 Thermaceae 0 188786 16 3095 8 1663 0 270 Thermus 22 genus 1 271 0 297 1 species Thermus aquaticus 56957 0 214 1 species Thermus oshimai 100 1 56956 0 Thermus brockianus species 186 1 37636 0 Thermus scotoductus species 2619321 0 221 1 no rank 1 221 0 1111069 Thermus sp. CCB_US3_UF1 species 1 143 0 456163 Thermus parvatiensis species 0 274 1 480 species Thermus thermophilus genus 1 5 Meiothermus 0 65551 3 720 Meiothermus ruber species 1 461 0 277 Meiothermus silvanus species 254 1 52022 0 2 170 0 186191 9 Marinithermus genus 1 0 186192 1 161 species Marinithermus hydrothermalis 208447 0 531 2 1 genus 8 Oceanithermus 1 523 0 187137 Oceanithermus profundus species 0 2762275 2 403 order 1 family 3 Trueperaceae 332247 0 403 2 genus 1 400 0 332248 1 400 0 332249 Truepera radiovictrix species order 1 Deinococcales 86 0 118964 15 7077 6991 14 183710 0 49 Deinococcaceae 1 family genus 1 72 Deinococcus 1298 0 6942 13 Deinococcus actinosclerus species 682 1 1768108 0 1309411 0 666 1 species Deinococcus soli Cha et al. 2016 species Deinococcus peraridilitoris 432329 0 475 1 2623546 0 531 1 no rank Deinococcus sp. NW-56 species 1 531 0 2080419 457 1 310783 0 Deinococcus deserti species 522 1 68909 0 Deinococcus geothermalis species 309887 0 489 1 species Deinococcus maricopensis 1 837 0 55148 Deinococcus proteolyticus species species Deinococcus gobiensis 0 502394 1 692 1 460 0 1299 Deinococcus radiodurans species 1 418 0 1182568 Deinococcus puniceus species 1182571 0 641 1 species Deinococcus swuensis 2474201 698 1239 0 Firmicutes 71 1 phylum 1737404 0 8338 16 class 1 order Tissierellales 40 0 1737405 14 7996 family 1 Gottschalkiaceae 1 2042895 0 698 3 1 genus 101 Gottschalkia 1505664 0 697 2 Gottschalkia acidurici species 1 596 0 1556 1 family Peptoniphilaceae 1161 0 1570339 10 7258 7 Parvimonas 1 genus 2 689 0 543311 species Parvimonas micra 0 33033 1 682 1161127 0 2765 1 genus 0 1852373 1 2765 species Murdochiella vaginalis 2 Finegoldia 1 genus 2 591 0 150022 1260 0 589 1 species Finegoldia magna 1 872 0 162289 genus 1 872 0 2637196 no rank Peptoniphilus sp. ING2-D1G species 872 1 1912856 0 3 1180 0 165779 Anaerococcus 1 genus 1 516 1 1870984 0 Anaerococcus mediterraneensis species 0 33034 1 663 species Anaerococcus prevotii no rank 2 342 0 1737407 2 342 0 1582879 Ezakiella 1 genus 1 Ezakiella massiliensis species 1 341 0 1852374 84086 0 675 1 no rank 675 1 243899 0 endosymbiont 'TC1' of Trimyema compressum species 2025762 209 186801 0 261 Clostridia 1 class 1057 3 2770089 0 order family 2 395 0 2770093 0 291988 2 395 genus 1 5 Thermosediminibacter 0 291990 1 390 species Thermosediminibacter oceani 662 1 2770092 0 family genus 0 499228 1 662 1 662 0 499229 Tepidanaerobacter acetatoxydans species 2 Natranaerobiales 1 order 675 3 485256 0 485255 0 673 2 family 375928 0 673 2 genus 1 41 Natranaerobius 375929 0 632 1 species Natranaerobius thermophilus 8 Thermoanaerobacterales order 1 37 13907 0 68295 13 6287 0 543371 Thermoanaerobacterales Family III. Incertae Sedis 13 1 family Caldicellulosiruptor 52 1 genus 4393 9 44000 0 532 1 52766 0 Caldicellulosiruptor lactoaceticus species 508 1 44001 0 Caldicellulosiruptor saccharolyticus species species Caldicellulosiruptor bescii 31899 0 541 1 55205 0 492 1 species Caldicellulosiruptor owensensis Caldicellulosiruptor hydrothermalis species 1 658 0 413888 species Caldicellulosiruptor kronotskyensis 0 413889 1 508 717609 0 479 1 species Caldicellulosiruptor obsidiansis 1 623 0 52765 Caldicellulosiruptor kristjanssonii species genus 1 Thermoanaerobacterium 3 0 28895 3 1881 species Thermoanaerobacterium xylanolyticum 0 29329 1 696 1517 0 1182 1 species Thermoanaerobacterium thermosaccharolyticum 0 227387 2 239 family 1 Thermodesulfobiaceae 1 0 227388 1 238 genus 0 184064 1 238 species Thermodesulfobium narugense family 1 6 Thermoanaerobacteraceae 186814 0 6884 18 genus 249529 0 480 1 species Caldanaerobacter subterraneus 0 911092 1 480 405 2 140458 0 Thermacetogenium 6 genus 1 species Thermacetogenium phaeum 0 85874 1 399 no rank 837 3 42857 0 1 Moorella 1 genus 624 2 44260 0 species Moorella thermoacetica 0 1525 1 623 genus 1 213 0 42837 1 213 0 42838 Ammonifex degensii species Carboxydothermus 3 1 genus 409 2 129957 0 species Carboxydothermus hydrogenoformans 129958 0 406 1 1 genus Thermoanaerobacter 144 0 1754 9 4747 species Thermoanaerobacter mathranii 583357 0 525 1 492 1 2325 0 Thermoanaerobacter kivui species 2636821 0 1470 2 no rank Thermoanaerobacter sp. X514 species 667 1 399726 0 Thermoanaerobacter sp. X513 species 1 803 0 573062 0 29323 1 543 species Thermoanaerobacter brockii 108150 0 538 1 species Thermoanaerobacter italicus species Thermoanaerobacter pseudethanolicus 0 496866 1 543 species Thermoanaerobacter wiegelii 46354 0 492 1 489 3 543372 0 Thermoanaerobacterales Family IV. Incertae Sedis 3 family 1 Mahella 1 1 genus 486 2 252965 0 species Mahella australiensis 252966 0 485 1 order 1 Halanaerobiales 2 0 53433 9 2365 1389 5 972 0 3 Halanaerobiaceae 1 family genus 1 464 0 32636 species Halothermothrix orenii 31909 0 464 1 922 3 2330 0 Halanaerobium 1 1 genus species Halanaerobium hydrogeniformans 0 656519 1 499 Halanaerobium praevalens species 1 422 0 2331 3 974 0 53434 family genus 42417 0 236 1 236 1 42422 0 Halobacteroides halobius species 28186 0 738 2 genus 1 Acetohalobium 2 28187 0 736 1 species Acetohalobium arabaticum 2007497 156 186802 0 4808 Clostridiales order 1 538999 0 51125 10 no rank 1 family 2 Clostridiales Family XVII. Incertae Sedis 539000 0 859 3 0 73918 2 857 genus 1 4 Thermaerobacter 0 73919 1 853 species Thermaerobacter marianensis 110 Intestinimonas 1 genus 2 15344 0 1392389 1 15234 0 1297617 Intestinimonas butyriciproducens species 3084 4 543314 0 7 Clostridiales Family XIII. Incertae Sedis 1 family 0 143393 1 1878 species [Eubacterium] sulci 86331 0 1199 2 1 genus Mogibacterium 8 1191 1 114527 0 Mogibacterium diversum species genus 0 2717089 1 31838 0 2086584 1 31838 species Mordavella sp. Marseille-P3756 family 1 203 Ruminococcaceae 541000 0 1266354 13 no rank 0 2305133 1 10732 1 10732 0 1572656 Ruminococcaceae bacterium CPB6 species 552397 0 3505 1 no rank 1 3505 0 29343 [Clostridium] cellulosi species 240238 3 1263 0 103 Ruminococcus genus 1 species Ruminococcus albus 1264 0 7860 1 Ruminococcus bicirculans species 1 232275 0 1160721 Flavonifractor 24 1 genus 2 59679 0 946234 0 292800 1 59655 species Flavonifractor plautii 1 genus 10 Ethanoligenens 253238 0 5898 2 species Ethanoligenens harbinense 0 253239 1 5888 1 2 0 1890281 Herbivorax genus 216851 0 946097 2 genus 1 215 Faecalibacterium 853 0 945882 1 species Faecalibacterium prausnitzii 0 216572 3 8194 family 1 1 Oscillospiraceae 18 Oscillibacter genus 1 8193 2 459786 0 Oscillibacter valericigenes species 8175 1 351091 0 186803 0 517900 25 family 1 506 Lachnospiraceae 1 46414 0 28050 genus 46414 1 39485 0 [Eubacterium] eligens species genus 1 Lachnoclostridium 97 0 1506553 4 60887 1 4400 0 66219 Lachnoclostridium phytofermentans species Lachnoclostridium phocaeense species 1 39367 0 1871021 1 17023 0 2608895 no rank 1 17023 0 1834196 Lachnoclostridium sp. YL32 species genus 2464 1 1663717 0 Herbinix luporum species 1 2464 0 1679721 698776 0 1824 1 genus 0 29360 1 1824 species Cellulosilyticum lentocellum 40011 3 572511 0 11 Blautia 1 genus Blautia hansenii species 1 20193 0 1322 19807 1 2648079 0 no rank species Blautia sp. YL58 1796616 0 19807 1 genus 35593 1 2569097 0 species [Eubacterium] hallii 39488 0 35593 1 genus 1 51627 0 2719313 species [Clostridium] bolteae 208479 0 51627 1 15 Anaerotignum 1 genus 4015 2 2039240 0 Anaerotignum propionicum species 4000 1 28446 0 genus 1 8887 0 2719231 84030 0 8887 1 species [Clostridium] saccharolyticum 0 186928 2 68652 no rank 0 712991 1 11978 species Lachnospiraceae bacterium oral taxon 500 species [Eubacterium] rectale 39491 0 56674 1 71 Anaerostipes 1 genus 53140 2 207244 0 Anaerostipes hadrus species 1 53069 0 649756 0 830 3 12401 1 genus 7 Butyrivibrio 0 185008 1 5785 species Butyrivibrio hungatei species Butyrivibrio proteoclasticus 0 43305 1 6609 Roseburia 25 genus 1 2 131479 0 841 301301 0 131454 1 species Roseburia hominis 4 8510 0 186806 Eubacteriaceae 8 1 family 106 Eubacterium genus 1 2 7474 0 1730 species Eubacterium limosum 0 1736 1 7368 genus 33951 0 1028 1 33952 0 1028 1 species Acetobacterium woodii Peptostreptococcaceae 212 1 family 8 38007 0 186804 1 1125 0 1481960 genus 1 1125 0 1731 Peptoclostridium acidaminophilum species 1 710 0 1411023 no rank 2081703 0 710 1 species Peptostreptococcaceae bacterium oral taxon 929 1 genus Clostridioides 83 0 1870884 2 31974 0 1496 1 31891 species Clostridioides difficile 1849828 0 1998 1 genus Paeniclostridium sordellii species 1998 1 1505 0 1 827 0 186831 genus species Acetoanaerobium sticklandii 0 1511 1 827 genus 1161 1 44259 0 1 1161 0 143361 Filifactor alocis species 5 Syntrophomonadaceae family 1 961 3 68298 0 129001 0 562 1 genus species Syntrophothermus lipocalidus 86170 0 562 1 genus 394 1 862 0 863 0 394 1 species Syntrophomonas wolfei Clostridiaceae 149 family 1 62100 41 31979 0 genus 1 10 Geosporobacter 390805 0 1693 2 species Geosporobacter ferrireducens 0 1424294 1 1683 1 genus Candidatus Arthromitus 8 49082 0 1148 4 0 2638829 3 1140 no rank 1508644 0 336 1 species Candidatus Arthromitus sp. SFB-mouse-NL Candidatus Arthromitus sp. SFB-mouse species 1 423 0 49118 1041504 0 381 1 species Candidatus Arthromitus sp. SFB-rat-Yit genus 1 Alkaliphilus 9 0 114627 3 1959 species Alkaliphilus metalliredigens 0 208226 1 1141 0 461876 1 809 species Alkaliphilus oremlandii genus Mordavella 0 1981033 1 80 0 1485 30 57071 genus 1 308 Clostridium species Clostridium chauvoei 0 46867 1 1634 1216932 0 1358 1 species Clostridium bornimense species Clostridium sporogenes 0 1509 1 894 species Clostridium tetani 0 1513 1 973 Clostridium tyrobutyricum species 966 1 1519 0 394958 0 1242 1 species Clostridium taeniosporum no rank 2 10764 0 2614128 species Clostridium sp. BNL1100 0 755731 1 2416 8348 1 1042156 0 Clostridium sp. SY8519 species Clostridium cellulovorans species 1 2003 0 1493 1226 1 1538 0 Clostridium ljungdahlii species Clostridium cochlearium species 1254 1 1494 0 984 1 84022 0 Clostridium aceticum species 0 36745 1 2034 species Clostridium saccharoperbutylacetonicum 1497 0 933 1 species Clostridium formicaceticum 1 3125 0 1502 Clostridium perfringens species Clostridium carboxidivorans species 1189 1 217159 0 1520 0 2649 1 species Clostridium beijerinckii species Clostridium scatologenes 0 1548 1 1344 species Clostridium pasteurianum 1501 0 2172 1 species Clostridium baratii 1561 0 2036 1 0 1491 1 6454 species Clostridium botulinum species Clostridium estertheticum 0 238834 1 1183 1 1162 0 84023 Clostridium autoethanogenum species 1 2316 0 1534 Clostridium kluyveri species 0 169679 1 1397 species Clostridium saccharobutylicum 0 1542 1 756 species Clostridium novyi Clostridium argentinense species 1 1193 0 29341 0 1488 1 1052 species Clostridium acetobutylicum species Clostridium butyricum 0 1492 1 2470 28 Christensenellaceae 1 family 3 6212 0 990719 990721 0 6184 2 1 genus 97 Christensenella Christensenella massiliensis species 1 6087 0 1805714 family 2304686 0 23331 11 2304693 0 1794 1 genus [Clostridium] thermosuccinogenes species 1 1794 0 84032 2304692 0 3775 3 genus species [Clostridium] clariflavum 288965 0 1173 1 Herbivorax saccincola species 1140 1 1677857 0 1 1462 0 1515 Ruminiclostridium thermocellum species genus 1422 1 2304691 0 1510 0 1422 1 species [Clostridium] stercorarium Mageeibacillus 3 1 genus 2 1164 0 1637257 1161 1 884684 0 Mageeibacillus indolicus species 1508657 0 2062 2 genus 1 Ruminiclostridium 299 1521 0 1763 1 species [Clostridium] cellulolyticum genus 0 236752 1 499 499 1 236753 0 Fastidiosipila sanguinis species no rank 0 2305130 1 12615 1834198 0 12615 1 species Ruminiclostridium sp. KB18 Heliobacteriaceae 8 family 1 3 1482 0 31984 1474 2 2697 0 21 Heliobacterium genus 1 0 35701 1 1453 species Heliobacterium modesticaldum 3 915 0 543349 2 Symbiobacteriaceae 1 family 1 genus Symbiobacterium 4 0 2733 2 913 Symbiobacterium thermophilum species 1 909 0 2734 1 family Peptococcaceae 60 186807 0 17598 28 1071 1 51196 0 genus 1 1071 0 51197 Syntrophobotulus glycolicus species 2 829 0 278993 Thermincola 10 genus 1 Thermincola potens species 1 819 0 863643 2 1286 0 51514 Dehalobacterium 1 genus 1 1 1285 0 51515 Dehalobacterium formicoaceticum species Dehalobacter 39 1 genus 4 2647 0 56112 912 1 55583 0 Dehalobacter restrictus species 2 1696 0 2635733 no rank 833 1 1147129 0 Dehalobacter sp. DCA species 1 863 0 1131462 Dehalobacter sp. CF species 1 genus Desulfosporosinus 65 79206 0 2607 4 species Desulfosporosinus meridiei 79209 0 669 1 species Desulfosporosinus acidiphilus 885581 0 1092 1 0 1563 1 781 species Desulfosporosinus orientis 547 2 471826 0 Candidatus Desulforudis 4 1 genus species Candidatus Desulforudis audaxviator 0 471827 1 543 4279 5 36853 0 Desulfitobacterium 19 1 genus 0 142877 1 637 species Desulfitobacterium metallireducens 0 233055 1 1053 species Desulfitobacterium dichloroeliminans 0 49338 1 1471 species Desulfitobacterium hafniense Desulfitobacterium dehalogenans species 1 1099 0 36854 genus 920 1 2282742 0 1 920 0 58138 Desulfotomaculum acetoxidans species 5 2700 0 1562 59 Desulfotomaculum 1 genus species Desulfotomaculum nigrificans 1565 0 540 1 species Desulfotomaculum reducens 59610 0 661 1 species Desulfotomaculum ferrireducens 1833852 0 724 1 Desulfotomaculum ruminis species 1 716 0 1564 genus 652 1 2282740 0 species Desulfotomaculum gibsoniae 102134 0 652 1 0 909932 30 152407 1 class Negativicutes 84 15 Acidaminococcales order 1 5 6925 0 1843488 88 Acidaminococcaceae family 1 6910 4 909930 0 genus 1 100 Acidaminococcus 904 0 6822 3 3460 1 187327 0 Acidaminococcus intestini species species Acidaminococcus fermentans 0 905 1 3262 order 1 245 Veillonellales 0 1843489 11 134968 134723 10 31977 0 646 Veillonellaceae family 1 Dialister 41 genus 1 2 8956 0 39948 1 8915 0 39950 Dialister pneumosintes species 2 108460 0 906 Megasphaera 93 genus 1 1 108367 0 907 Megasphaera elsdenii species 0 909928 2 1909 genus 1 1 Negativicoccus 0 1702287 1 1908 species Negativicoccus massiliensis 3 14752 0 29465 27 Veillonella genus 1 1 1816 0 248315 Veillonella rodentium species 12909 1 29466 0 Veillonella parvula species 0 909929 13 10430 1 order 45 Selenomonadales 1 family 24 Selenomonadaceae 1843491 0 8859 8 1088 1 158846 0 genus 1 1088 0 158847 Megamonas hypermegale species genus 1 Selenomonas 48 970 0 7747 6 0 971 1 2557 species Selenomonas ruminantium 69823 0 1301 1 species Selenomonas sputigena 2637378 0 3841 3 no rank species Selenomonas sp. oral taxon 478 712538 0 1119 1 species Selenomonas sp. oral taxon 920 1884263 0 1052 1 species Selenomonas sp. oral taxon 136 0 713030 1 1670 0 1843490 4 1526 family 1 3 Sporomusaceae 365348 0 1523 3 genus 1 11 Pelosinus 697 1 365349 0 Pelosinus fermentans species 815 1 2629460 0 no rank 1 815 0 484770 Pelosinus sp. UFO1 species 0 91061 423 274486 1 class Bacilli 178 318 Bacillales order 1 260 143817 0 1385 8 4156 0 539002 no rank no rank 0 539738 1 646 genus 1 646 0 1378 no rank 0 2624949 1 646 species Gemella sp. oral taxon 928 1785995 0 646 1 no rank 0 539742 7 3510 0 33986 7 3510 1 genus Exiguobacterium 22 1 604 0 132920 Exiguobacterium antarcticum species 414 1 332410 0 Exiguobacterium sibiricum species no rank 2644629 0 2470 4 species Exiguobacterium sp. ZWU0009 1224749 0 334 1 1 289 0 1399115 Exiguobacterium sp. MH3 species species Exiguobacterium sp. AT1b 360911 0 1413 1 0 1849031 1 434 species Exiguobacterium sp. U13-1 1 Sporolactobacillaceae 1 family 709 2 186821 0 no rank 708 1 663587 0 0 85683 1 708 species [Bacillus] selenitireducens 3389 9 186820 0 5 Listeriaceae 1 family 6 2973 0 1637 Listeria 16 1 genus Listeria welshimeri species 361 1 1643 0 species Listeria innocua 1642 0 303 1 species Listeria ivanovii 0 1638 1 566 0 1639 1 1300 species Listeria monocytogenes Listeria seeligeri species 1 427 0 1640 1 genus 1 Brochothrix 0 2755 2 411 species Brochothrix thermosphacta 0 2756 1 410 Bacillaceae 97 family 1 116 67069 0 186817 genus 2675230 0 1210 2 802 1 665099 0 Bacillus oceanisediminis species 1 408 0 859143 Bacillus kochii species 453 1 351195 0 genus 0 1230341 1 453 species Salimicrobium jeotgali genus 0 175304 1 355 species Lentibacillus amyloliquefaciens 1472767 0 355 1 1 genus Lysinibacillus 2 0 400634 5 2729 28031 0 476 1 species Lysinibacillus fusiformis 0 1145276 1 432 species Lysinibacillus varians 536 1 2636778 0 no rank Lysinibacillus sp. YS11 species 1 536 0 2072025 Lysinibacillus sphaericus species 1 1283 0 1421 Bacillus 1747 1 genus 43555 58 1386 0 species Bacillus glycinifermentans 1664069 0 1125 1 Bacillus aryabhattai species 463 1 412384 0 species Bacillus gibsonii 0 79881 1 111 Bacillus endophyticus species 645 1 135735 0 Bacillus beveridgei species 1 455 0 632773 573 1 324767 0 Bacillus infantis species 1 340 0 1413 Bacillus cellulosilyticus species 0 86664 1 324 species Bacillus flexus species Bacillus coagulans 1398 0 1541 1 species Bacillus safensis 561879 0 698 1 no rank 19 6792 0 185979 species Bacillus sp. FJAT-14266 1837130 0 452 1 2009331 0 154 1 species Bacillus sp. MD-5 178 1 1127744 0 Bacillus sp. JS species 401 1 1565991 0 Bacillus sp. X1(2014) species species Bacillus sp. SJ-10 0 563169 1 534 species Bacillus sp. IHB B 7164 1827146 0 433 1 Bacillus sp. YP1 species 1 119 0 1574141 species Bacillus sp. LM 4-2 0 1628753 1 78 2049935 0 70 1 species Bacillus sp. Lzh-5 1856406 0 597 1 species Bacillus sp. H15-1 Bacillus sp. Pc3 species 400 1 1446792 0 591 1 2026248 0 Bacillus sp. 1s-1 species species Bacillus sp. SDLI1 0 1774743 1 585 Bacillus sp. (in: Bacteria) species 98 1 1409 0 0 666686 1 730 species Bacillus sp. 1NLA3E species Bacillus sp. WP8 0 756828 1 372 species Bacillus sp. OxB-1 98228 0 401 1 species Bacillus sp. 275 1941347 0 425 1 1 174 0 1570330 Bacillus sp. BH072 species Bacillus smithii species 1 300 0 1479 1 711 0 1471 Bacillus methanolicus species 1283 1 1404 0 Bacillus megaterium species 86661 0 12799 10 species group species Bacillus thuringiensis 1428 0 3809 1 0 1396 1 4414 species Bacillus cereus 1 1686 0 1405 Bacillus mycoides species no rank 0 2750818 3 1416 species Bacillus sp. FDAARGOS_235 0 1839798 1 572 0 1892404 1 383 species Bacillus sp. ABP14 0 2053832 1 461 species Bacillus sp. HBCD-sjtu 580165 0 375 1 species Bacillus cytotoxicus species Bacillus anthracis 1392 0 398 1 155322 0 293 1 species Bacillus toyonensis species Bacillus bombysepticus 0 658666 1 408 species group 370 1 1792192 0 species Bacillus altitudinis 293387 0 370 1 species Bacillus weihaiensis 1547283 0 539 1 0 79883 1 608 species Bacillus horikoshii species Bacillus xiamenensis 1178537 0 502 1 species Bacillus pumilus 0 1408 1 2003 species group 9 9191 0 653685 1 735 0 1648923 Bacillus paralicheniformis species 0 1423 1 2880 species Bacillus subtilis 1938374 0 3489 3 species subgroup species Bacillus siamensis 659243 0 625 1 Bacillus amyloliquefaciens species 1513 1 1390 0 species Bacillus velezensis 492670 0 1351 1 species Bacillus sonorensis 119858 0 559 1 Bacillus vallismortis species 115 1 72361 0 Bacillus licheniformis species 765 1 1402 0 648 1 1452 0 Bacillus atrophaeus species Bacillus cohnii species 1 435 0 33932 1 Oceanobacillus 1 genus 2 563 0 182709 562 1 182710 0 Oceanobacillus iheyensis species genus 1489 2 2675229 0 species Bacillus muralis 264697 0 501 1 988 1 1478 0 Bacillus simplex species Virgibacillus 2 1 genus 2747 7 84406 0 Virgibacillus necropolis species 1 376 0 163877 1473 0 775 1 species Virgibacillus pantothenticus species Virgibacillus phasianinus 2017483 0 426 1 no rank 0 2620237 2 643 1 240 0 403957 Virgibacillus sp. SK37 species species Virgibacillus sp. 6R 0 1911587 1 403 species Virgibacillus halodenitrificans 0 1482 1 525 genus 1 Halobacillus 1 0 45667 3 824 1 457 0 402384 Halobacillus mangrovi species species Halobacillus halophilus 1570 0 366 1 459532 0 411 1 genus Terribacillus aidingensis species 1 411 0 586416 5 2471 0 2675234 genus 1 514 0 79885 Bacillus pseudofirmus species 1 594 0 79880 Bacillus clausii species Bacillus krulwichiae species 459 1 199441 0 467 1 300825 0 Bacillus lehensis species 86665 0 437 1 species Bacillus halodurans 0 150247 6 2246 genus 1 29 Anoxybacillus species Anoxybacillus gonensis 0 198467 1 235 no rank 2 887 0 2639704 545 1 1490052 0 Anoxybacillus sp. B2M1 species 1490057 0 342 1 species Anoxybacillus sp. B7M1 Anoxybacillus flavithermus species 1 757 0 33934 338 1 294699 0 Anoxybacillus amylolyticus species 1 genus Fictibacillus 7 0 1329200 3 1059 0 1221500 1 538 species Fictibacillus phosphorivorans species Fictibacillus arsenicus 255247 0 514 1 466 1 1055323 0 genus species Aeribacillus pallidus 0 33936 1 466 29331 0 711 1 genus 1 711 0 1449 Amphibacillus xylanus species 1906945 0 765 2 1 genus 1 Parageobacillus 1426 0 764 1 species Parageobacillus thermoglucosidasius 0 129337 15 4918 genus 1 321 Geobacillus 6 1732 0 2642459 no rank 1 126 0 544556 Geobacillus sp. Y412MC61 species Geobacillus sp. Y412MC52 species 140 1 550542 0 581103 0 548 1 species Geobacillus sp. Y4.1MC1 Geobacillus sp. GHH01 species 1 273 0 1233873 204 1 691437 0 Geobacillus sp. C56-T3 species 0 471223 1 441 species Geobacillus sp. WCH70 1509 4 1505648 0 species group Geobacillus kaustophilus species 1 307 0 1462 Geobacillus thermocatenulatus species 249 1 33938 0 species Geobacillus lituanicus 169283 0 361 1 33941 0 592 1 species Geobacillus thermoleovorans species Geobacillus stearothermophilus 0 1422 1 527 344 1 33940 0 Geobacillus thermodenitrificans species 0 1921421 1 271 species Geobacillus genomosp. 3 species Geobacillus subterraneus 129338 0 214 1 40547 46 186822 0 89 Paenibacillaceae 1 family 11 Brevibacillus 1 genus 2449 4 55080 0 1465 0 897 1 species Brevibacillus laterosporus Brevibacillus formosus species 536 1 54913 0 1 1005 0 1393 Brevibacillus brevis species no rank 3 1208 0 85151 1 genus 3 Aneurinibacillus 0 55079 3 1208 no rank 0 2642329 1 554 1450761 0 554 1 species Aneurinibacillus sp. XH2 species Aneurinibacillus soli 0 1500254 1 651 genus 1 Paenibacillus 282 44249 0 35827 36 species Paenibacillus stellifer 169760 0 1205 1 1462996 0 1068 1 species Paenibacillus yonginensis 0 159743 1 701 species Paenibacillus terrae Paenibacillus peoriae species 1 606 0 59893 716 1 528191 0 Paenibacillus xylanexedens species 1587 1 44251 0 Paenibacillus durus species Paenibacillus borealis species 1269 1 160799 0 993 1 365617 0 Paenibacillus sabinae species 61624 0 1562 1 species Paenibacillus mucilaginosus species Paenibacillus crassostreae 1763538 0 507 1 species Paenibacillus beijingensis 0 1126833 1 947 1 1159 0 1870820 Paenibacillus ihbetae species Paenibacillus odorifer species 1 662 0 189426 species group 1 1329 0 2044880 species Paenibacillus riograndensis 483937 0 1329 1 species Paenibacillus bovis 0 1616788 1 1021 526 1 1178515 0 Paenibacillus swuensis species 1 619 0 172713 Paenibacillus kribbensis species 1 1438 0 414771 Paenibacillus donghaensis species no rank 13 13036 0 185978 species Paenibacillus sp. FSL P4-0081 0 1536769 1 1127 species Paenibacillus sp. lzh-N1 2069255 0 738 1 1 771 0 1536770 Paenibacillus sp. FSL R5-0345 species species Paenibacillus sp. IHBB 10380 0 1566358 1 473 Paenibacillus sp. 32O-W species 1 810 0 1695218 1536774 0 1291 1 species Paenibacillus sp. FSL H7-0357 Paenibacillus sp. Y412MC10 species 1002 1 481743 0 species Paenibacillus sp. FSL R7-0331 1536773 0 1655 1 1536771 0 1375 1 species Paenibacillus sp. FSL R5-0912 0 1536775 1 620 species Paenibacillus sp. FSL H7-0737 Paenibacillus sp. FSL R7-0273 species 1 1390 0 1536772 1 890 0 324057 Paenibacillus sp. JDR-2 species Paenibacillus sp. BIHB4019 species 894 1 1870819 0 1 1078 0 189425 Paenibacillus graminis species 2149 1 1406 0 Paenibacillus polymyxa species Paenibacillus larvae species 1 551 0 1464 162209 0 816 1 species Paenibacillus naphthalenovorans 974 2 76632 0 1 Thermobacillus genus 1 0 377615 1 973 species Thermobacillus composti 564 Staphylococcaceae 1 family 14244 41 90964 0 genus 2005363 0 199 1 0 1849491 1 199 species Auricoccus indicus 4 1131 0 69965 3 Macrococcus genus 1 no rank 363 1 2619255 0 Macrococcus sp. IME1552 species 363 1 1898474 0 Macrococcus caseolyticus species 1 437 0 69966 Macrococcus canis species 328 1 1855823 0 0 45669 2 491 1 genus Salinicoccus 2 0 407035 1 489 species Salinicoccus halodurans Staphylococcus 185 genus 1 11859 33 1279 0 1283 0 319 1 species Staphylococcus haemolyticus 0 1288 1 594 species Staphylococcus xylosus species Staphylococcus pseudintermedius 0 283734 1 557 species Staphylococcus simulans 1286 0 522 1 1 296 0 70255 Staphylococcus condimenti species 1 280 0 61015 Staphylococcus succinus species species Staphylococcus lutrae 155085 0 206 1 28035 0 264 1 species Staphylococcus lugdunensis Staphylococcus cohnii species 303 1 29382 0 1 190 0 1281 Staphylococcus carnosus species Staphylococcus equorum species 252 1 246432 0 Staphylococcus nepalensis species 1 236 0 214473 species Staphylococcus sciuri 0 1296 1 262 Staphylococcus argenteus species 281 1 985002 0 species Staphylococcus stepanovicii 0 643214 1 360 Staphylococcus kloosii species 203 1 29384 0 Staphylococcus piscifermentans species 271 1 70258 0 species Staphylococcus epidermidis 1282 0 427 1 species Staphylococcus pettenkoferi 0 170573 1 332 Staphylococcus schleiferi species 396 1 1295 0 1 302 0 91994 no rank 0 1715860 1 302 species Staphylococcus sp. AntiMn-1 377 1 308354 0 Staphylococcus simiae species species Staphylococcus felis 46127 0 195 1 1 370 0 29385 Staphylococcus saprophyticus species species Staphylococcus hyicus 0 1284 1 334 Staphylococcus warneri species 413 1 1292 0 species Staphylococcus capitis 0 29388 1 394 1280 0 1488 1 species Staphylococcus aureus 1 169 0 1290 Staphylococcus hominis species Staphylococcus pasteuri species 1 577 0 45972 1294 0 198 1 species Staphylococcus muscae 0 985762 1 306 species Staphylococcus agnetis 24 9855 0 186818 Planococcaceae 41 family 1 378 1 648802 0 genus 0 241244 1 378 species Rummeliibacillus stabekisii 1 692 0 157226 genus Jeotgalibacillus malaysiensis species 1 692 0 1508404 1 genus 7 Sporosarcina 0 1569 5 2737 1135 2 2647733 0 no rank Sporosarcina sp. P37 species 1 614 0 1930546 species Sporosarcina sp. P33 1930764 0 521 1 0 1571 1 1129 species Sporosarcina ureae species Sporosarcina psychrophila 1476 0 466 1 Planococcus 40 1 genus 4136 12 1372 0 1 370 0 1215089 Planococcus halocryophilus species species Planococcus plakortidis 1038856 0 249 1 192421 0 912 1 species Planococcus maritimus Planococcus rifietoensis species 358 1 200991 0 Planococcus faecalis species 1 272 0 1598147 species Planococcus donghaensis 0 414778 1 286 2662419 0 779 2 no rank 1526927 0 385 1 species Planococcus sp. PAMC 21323 1 394 0 2058136 Planococcus sp. MB-3u-03 species species Planococcus antarcticus 0 161360 1 378 273 1 1374 0 Planococcus kocurii species 1 219 0 1302659 Planococcus sp. L10.15 species genus 1 670 0 1649 no rank 670 1 2644826 0 0 1750719 1 670 species Kurthia sp. 11kri321 1201 3 648800 0 1 Solibacillus 1 genus Solibacillus silvestris species 1 715 0 76853 0 2637870 1 485 no rank species Solibacillus sp. R5-41 0 2048654 1 485 Thermoactinomycetaceae 1 family 1 616 4 186824 0 2 515 0 1677050 Novibacillus 26 1 genus Novibacillus thermophilus species 489 1 1471761 0 genus Laceyella 292635 0 100 1 9 2914 0 186823 Alicyclobacillaceae 6 1 family 1 Tumebacillus 1 genus 1619 3 432330 0 Tumebacillus algifaecis species 726 1 1214604 0 species Tumebacillus avium 0 1903704 1 892 1129704 0 665 3 genus 1 Kyrpidia 2 1 341 0 2055160 Kyrpidia sp. EA-1 species 1 322 0 33943 Kyrpidia tusciae species 1 genus 20 Alicyclobacillus 29330 0 624 2 0 405212 1 604 species Alicyclobacillus acidocaldarius 130491 162 186826 0 Lactobacillales 1126 order 1 81852 0 16369 17 1 family 35 Enterococcaceae genus 2737 0 700 2 633807 0 357 1 species Vagococcus penaei Vagococcus teuberi species 343 1 519472 0 14376 12 1350 0 691 Enterococcus 1 genus 1 507 0 37734 Enterococcus casseliflavus species species Enterococcus wangshanyuanii 0 2005703 1 670 1 6794 0 1352 Enterococcus faecium species 2608891 0 1325 3 no rank Enterococcus sp. CR-Ec1 species 385 1 2057791 0 species Enterococcus sp. FDAARGOS_163 2060306 0 388 1 552 1 2060307 0 Enterococcus sp. FDAARGOS_375 species 2266 1 1351 0 Enterococcus faecalis species 0 53346 1 630 species Enterococcus mundtii Enterococcus durans species 728 1 53345 0 species Enterococcus thailandicus 0 417368 1 260 1 505 0 1354 Enterococcus hirae species 1 291 0 33969 genus 1 291 0 33970 Melissococcus plutonius species 0 51668 1 967 genus 1 967 0 51669 Tetragenococcus halophilus species 1 family Carnobacteriaceae 5 0 186828 11 3041 3 754 0 1470540 2 Jeotgalibaca 1 genus species Jeotgalibaca dankookensis 0 708126 1 386 2621505 0 366 1 no rank 366 1 1903686 0 Jeotgalibaca sp. PTS2502 species 1625 5 2747 0 Carnobacterium 4 genus 1 762 2 257487 0 no rank species Carnobacterium sp. 17-4 208596 0 381 1 1 381 0 1564681 Carnobacterium sp. CP1 species 2751 0 450 1 species Carnobacterium maltaromaticum 1 409 0 147709 Carnobacterium inhibens species 7 Marinilactibacillus genus 1 2 657 0 191769 no rank 2632303 0 650 1 species Marinilactibacillus sp. 15R 0 1911586 1 650 no rank 263855 0 407 1 1993866 0 407 1 species Lactobacillales bacterium 8 2253 0 186827 2 Aerococcaceae 1 family 0 1375 7 2251 1 genus 8 Aerococcus species Aerococcus christensenii 87541 0 356 1 Aerococcus urinae species 1 508 0 1376 species Aerococcus viridans 0 1377 1 264 species Aerococcus urinaeequi 51665 0 412 1 Aerococcus sanguinicola species 380 1 119206 0 0 128944 1 323 species Aerococcus urinaehominis 1049 Streptococcaceae 1 family 49 80620 0 1300 1 genus Lactococcus 3 0 1357 5 2873 588 1 1363 0 Lactococcus garvieae species 0 1366 1 200 species Lactococcus raffinolactis 0 1364 1 303 species Lactococcus piscium 1779 1 1358 0 Lactococcus lactis species 76698 43 1301 0 Streptococcus 1824 1 genus 2085 1 1303 0 Streptococcus oralis species species Streptococcus halotolerans 1814128 0 462 1 0 257758 1 453 species Streptococcus pseudopneumoniae species Streptococcus agalactiae 1311 0 15560 1 0 1348 1 551 species Streptococcus parauberis species group 119603 0 1416 2 0 1334 1 572 species Streptococcus dysgalactiae 1 844 0 1336 Streptococcus equi species Streptococcus pantholopis species 417 1 1811193 0 species Streptococcus himalayensis 0 1888195 1 274 0 671232 3 15688 species group 801 1 1338 0 Streptococcus intermedius species species Streptococcus constellatus 0 76860 1 994 1 13893 0 1328 Streptococcus anginosus species 3433 1 1304 0 Streptococcus salivarius species Streptococcus cristatus species 1 469 0 45634 0 1825069 1 225 species Streptococcus marmotae species Streptococcus mitis 0 28037 1 1641 species Streptococcus pluranimalium 0 82348 1 303 Streptococcus gordonii species 1 1063 0 1302 Streptococcus macedonicus species 1 424 0 59310 1 575 0 1326 Streptococcus acidominimus species no rank 0 2608887 7 5227 0 1839799 1 679 species Streptococcus sp. FDAARGOS_192 1 537 0 1156431 Streptococcus sp. I-G2 species 0 1902136 1 1860 species Streptococcus sp. NPS 308 Streptococcus sp. 'group B' species 1 322 0 1319 Streptococcus sp. I-P16 species 1 636 0 1156433 0 712633 1 429 species Streptococcus sp. oral taxon 431 Streptococcus sp. A12 species 1 764 0 1759399 0 197614 1 2993 species Streptococcus pasteurianus 400065 0 406 1 species Streptococcus merionis species Streptococcus thermophilus 0 1308 1 821 1 1801 0 1318 Streptococcus parasanguinis species species Streptococcus iniae 1346 0 640 1 Streptococcus sanguinis species 1 743 0 1305 Streptococcus suis species 8234 1 1307 0 0 1314 1 1699 species Streptococcus pyogenes species Streptococcus pneumoniae 0 1313 1 1595 Streptococcus equinus species 636 1 1335 0 Streptococcus gallolyticus species 1 970 0 315405 1 1638 0 150055 Streptococcus lutetiensis species species Streptococcus infantarius 0 102684 1 1615 species Streptococcus uberis 0 1349 1 319 498 1 1309 0 Streptococcus mutans species 1 family Leuconostocaceae 20 0 81850 17 3318 8 Leuconostoc genus 1 1580 9 1243 0 136609 0 105 1 species Leuconostoc kimchii species Leuconostoc carnosum 0 1252 1 140 no rank 0 2685106 1 192 1 192 0 979982 Leuconostoc sp. C2 species 83 1 255248 0 Leuconostoc garlicum species species Leuconostoc gelidum 1244 0 338 1 species Leuconostoc lactis 0 1246 1 111 1 257 0 33964 Leuconostoc citreum species 0 1245 1 346 species Leuconostoc mesenteroides 46254 0 190 1 genus species Oenococcus oeni 1247 0 190 1 0 46255 6 1528 1 genus Weissella 6 species Weissella koreensis 165096 0 138 1 137591 0 832 1 species Weissella cibaria 137 1 759620 0 Weissella ceti species 266 1 1631871 0 Weissella jogaejeotgali species 0 1249 1 149 species Weissella paramesenteroides 58 23357 0 33958 110 Lactobacillaceae family 1 genus 0 2767881 2 333 1625 0 252 1 species Lactobacillus sanfranciscensis species Lactobacillus lindneri 0 53444 1 81 genus 1477 3 2742598 0 1613 0 425 1 species Lactobacillus fermentum Lactobacillus reuteri species 532 1 1598 0 species Lactobacillus mucosae 97478 0 520 1 genus 2767879 0 1462 6 1 271 0 392416 Lactobacillus crustorum species 0 1612 1 278 species Lactobacillus farciminis 1602 0 178 1 species Lactobacillus alimentarius Lactobacillus ginsenosidimutans species 320 1 1007676 0 Lactobacillus allii species 165 1 1847728 0 species Lactobacillus heilongjiangensis 0 1074467 1 250 genus 3 1650 0 2767842 Lactobacillus paraplantarum species 189 1 60520 0 Lactobacillus pentosus species 289 1 1589 0 0 1590 1 1172 species Lactobacillus plantarum 776 2 2767885 0 genus 0 1599 1 446 species Lactobacillus sakei 1 330 0 28038 Lactobacillus curvatus species genus 0 2767876 1 1023 1023 1 1603 0 Lactobacillus amylophilus species genus 4 3090 0 2767887 1 570 0 1601 Lactobacillus agilis species 319 1 89059 0 Lactobacillus acidipiscis species 0 1623 1 1148 species Lactobacillus ruminis 1624 0 1053 1 species Lactobacillus salivarius 1 genus Lactobacillus 516 1578 0 7192 16 267818 0 232 1 species Lactobacillus kefiranofaciens Lactobacillus gallinarum species 351 1 52242 0 Lactobacillus acetotolerans species 1 236 0 1600 1 1058 0 33959 Lactobacillus johnsonii species no rank 665 4 2620435 0 species Lactobacillus sp. CBA3606 0 2099789 1 142 Lactobacillus sp. CBA3605 species 1 118 0 2099788 species Lactobacillus sp. D1501 0 2108362 1 225 1545702 0 180 1 species Lactobacillus sp. wkB8 species Lactobacillus delbrueckii 1584 0 1219 1 Lactobacillus jensenii species 1 416 0 109790 1 922 0 1604 Lactobacillus amylovorus species Lactobacillus gasseri species 1 516 0 1596 164 1 83683 0 Lactobacillus amylolyticus species species Lactobacillus helveticus 1587 0 656 1 Lactobacillus acidophilus species 1 241 0 1579 7 Pediococcus genus 1 6 1723 0 1253 Pediococcus inopinatus species 1 181 0 114090 species Pediococcus pentosaceus 1255 0 439 1 1 361 0 1670797 species group Pediococcus acidilactici species 1 361 0 1254 1 358 0 187452 Pediococcus claussenii species species Pediococcus damnosus 51663 0 377 1 292 1 2767892 0 genus 240427 0 292 1 species Lactobacillus paracollinoides 2767889 0 585 2 genus 375175 0 337 1 species Lactobacillus backii 248 1 1610 0 Lactobacillus coryniformis species genus 1 190 0 2767890 0 1193095 1 190 species Lactobacillus hokkaidonensis 0 2759736 3 1684 genus 497 1 1597 0 Lactobacillus paracasei species species Lactobacillus rhamnosus 0 47715 1 472 species Lactobacillus casei 0 1582 1 715 2767877 0 198 1 genus 1 198 0 148814 Lactobacillus kunkeei species 0 2767886 3 840 genus 305 1 267363 0 Lactobacillus zymae species Lactobacillus brevis species 349 1 1580 0 637971 0 186 1 species Lactobacillus koreensis genus 0 2767893 3 732 1 334 0 1581 Lactobacillus buchneri species species Lactobacillus parabuchneri 0 152331 1 130 268 1 1138822 0 Lactobacillus curieae species 2 631 0 33974 no rank 1930845 0 631 2 1 genus 2 Ndongobacter species Ndongobacter massiliensis 0 1871025 1 629 526524 0 11196 11 class 1 3 Erysipelotrichia order 1 13 Erysipelotrichales 0 526525 10 11193 9 11180 0 128827 Erysipelotrichaceae 69 1 family 1 Erysipelothrix genus 1 3 773 0 1647 0 1514105 1 452 species Erysipelothrix larvae species Erysipelothrix rhusiopathiae 0 1648 1 320 5331 1 544447 0 no rank 0 1834207 1 5331 species Erysipelotrichaceae bacterium I46 1729679 0 2924 2 1 genus Faecalibaculum 5 1 2919 0 1702221 Faecalibaculum rodentium species genus 1 Turicibacter 7 191303 0 2083 2 no rank 2638206 0 2076 1 Turicibacter sp. H121 species 1 2076 0 1712675 1 Limnochordia class 1 5 635 0 1676648 1 order 12 Limnochordales 1676649 0 634 4 1676650 0 622 3 1 family 17 Limnochordaceae 6 Limnochorda genus 1 605 2 1676651 0 599 1 1555112 0 Limnochorda pilosa species 544448 0 11611 97 phylum 1 153 0 2799557 no rank genus 1 153 0 1912503 0 2624196 1 153 no rank species Candidatus Izimaplasma sp. HR1 1541959 0 153 1 0 31969 94 10210 class 1 Mollicutes 14 12 1305 0 186329 25 Acholeplasmatales 1 order 1280 11 2146 0 Acholeplasmataceae 4 family 1 0 2147 5 949 genus 1 Acholeplasma 7 species Acholeplasma laidlawii 2148 0 166 1 0 38986 1 346 species Acholeplasma palmae 1 165 0 61635 Acholeplasma brassicae species Acholeplasma oculi species 265 1 35623 0 327 5 33926 0 genus 85630 0 96 1 species group 0 37692 1 96 species Candidatus Phytoplasma mali species group 3 131 0 85620 100379 0 37 1 species Onion yellows phytoplasma 1 48 0 202462 Maize bushy stunt phytoplasma species 229545 0 46 1 species Aster yellows witches'-broom phytoplasma species group 1 100 0 85632 59748 0 100 1 species Candidatus Phytoplasma australiense 10 Entomoplasmatales 1 order 38 4577 0 186328 Spiroplasmataceae 20 family 1 3291 24 2131 0 Spiroplasma 16 genus 1 3271 23 2132 0 species Spiroplasma culicicola 216935 0 212 1 species Spiroplasma kunkelii 0 47834 1 89 2144 0 132 1 species Spiroplasma mirum no rank 0 2637901 2 228 0 1914410 1 114 species Spiroplasma sp. NBRC 100390 Spiroplasma sp. TU-14 species 114 1 1898044 0 0 2139 1 210 species Spiroplasma clarkii species Spiroplasma monobiae 2136 0 158 1 species Spiroplasma eriocheiris 315358 0 118 1 species Spiroplasma diminutum 216936 0 122 1 Spiroplasma floricola species 212 1 216937 0 0 1114980 1 132 species Spiroplasma atrichopogonis species Spiroplasma taiwanense 0 2145 1 212 Spiroplasma helicoides species 116 1 216938 0 species Spiroplasma chrysopicola 0 216933 1 68 80 1 216944 0 Spiroplasma sabaudiense species 1 96 0 216945 Spiroplasma syrphidicola species species Spiroplasma apis 2137 0 93 1 1 135 0 216934 Spiroplasma corruscae species Spiroplasma cantharicola species 1 60 0 362837 0 2133 1 62 species Spiroplasma citri Spiroplasma litorale species 1 504 0 216942 species Spiroplasma turonicum 216946 0 216 1 family 33925 0 1276 13 1 Mesoplasma 1 genus 8 821 0 46239 87 1 225999 0 Mesoplasma syrphidae species 0 216427 1 133 species Mesoplasma chauliocola Mesoplasma tabanidae species 102 1 219745 0 species Mesoplasma lactucae 138853 0 65 1 74 1 2149 0 Mesoplasma entomophilum species Mesoplasma coleopterae species 52 1 324078 0 Mesoplasma florum species 307 1 2151 0 2 Entomoplasma 1 genus 5 455 0 46238 species Entomoplasma somnilux 215578 0 90 1 Entomoplasma luminosum species 216 1 214888 0 53 1 81459 0 Entomoplasma melaleucae species 74700 0 94 1 species Entomoplasma freundtii 1 order Mycoplasmatales 8 0 2085 43 4314 0 2092 42 4306 1 family Mycoplasmataceae 3 2129 0 155 2 genus species Ureaplasma urealyticum 2130 0 66 1 Ureaplasma parvum species 1 89 0 134821 genus 2767358 0 1199 12 species Mycoplasma agalactiae 2110 0 115 1 1 220 0 28903 Mycoplasma bovis species 0 2107 1 41 species Mycoplasma pulmonis Mycoplasma arginini species 64 1 2094 0 1 27 0 171284 Mycoplasma cynos species 2109 0 100 1 species Mycoplasma synoviae Mycoplasma bovigenitalium species 1 75 0 2112 89 1 2115 0 Mycoplasma fermentans species 0 29555 1 245 species Mycoplasma canis 48003 0 50 1 species Mycoplasma pullorum 1 80 0 2113 Mycoplasma californicum species species Mycoplasma bovirhinis 29553 0 93 1 22 Mycoplasma genus 1 27 2949 0 2093 0 2118 1 34 species Mycoplasma mobile Mycoplasma suis species 1 106 0 57372 no rank 110 1 2683645 0 Mycoplasma sp. (ex Biomphalaria glabrata) species 1 110 0 1749074 2099 0 102 1 species Mycoplasma hyopneumoniae species group 0 656088 3 622 species Mycoplasma leachii 0 2105 1 147 1 170 0 2095 Mycoplasma capricolum species 305 1 2102 0 Mycoplasma mycoides species Mycoplasma ovis species 48 1 171632 0 species Mycoplasma hominis 2098 0 170 1 1 36 0 2128 Mycoplasma flocculare species 0 65123 1 27 species Mycoplasma wenyonii 49 1 29501 0 Mycoplasma haemofelis species 0 45362 1 72 species Mycoplasma bovoculi Mycoplasma gallisepticum species 311 1 2096 0 2104 0 13 1 species Mycoplasma pneumoniae Mycoplasma hyorhinis species 1 155 0 2100 Mycoplasma crocodyli species 1 124 0 50052 Mycoplasma haemocanis species 1 28 0 136241 species Mycoplasma yeatsii 0 51365 1 131 2123 0 100 1 species Mycoplasma putrefaciens 984991 0 71 1 species Mycoplasma parvum 264 1 29554 0 Mycoplasma canadense species 1 121 0 2111 Mycoplasma arthritidis species Mycoplasma dispar species 99 1 86660 0 0 28227 1 88 species Mycoplasma penetrans 1 46 0 2097 Mycoplasma genitalium species 2 1248 0 713063 no rank Tenericutes bacterium MZ-XQ species 1 721 0 1911683 species Tenericutes bacterium MO-XQ 1911684 0 527 1 0 67819 3 374 phylum 374 3 1663419 0 class 1 Fimbriimonadales order 1 3 374 0 1663425 2 373 0 1663426 family 1005038 0 373 2 1 genus Fimbriimonas 2 1005039 0 371 1 species Fimbriimonas ginsengisoli no rank 0 1859062 2 136 0 262406 2 136 genus 1 9 Thermobaculum species Thermobaculum terrenum 166501 0 127 1 phylum 1435 7 200930 0 class 1 Deferribacteres 2 0 68337 7 1435 2 Deferribacterales 1 order 1433 6 191393 0 13 Deferribacteraceae 1 family 1431 5 191394 0 117999 0 470 1 genus 1 470 0 118000 Denitrovibrio acetiphilus species genus 1 298 0 2351 2352 0 298 1 species Flexistipes sinusarabici genus 0 545865 1 201 species Calditerrivibrio nitroreducens 477976 0 201 1 genus 53572 0 449 1 Deferribacter desulfuricans species 449 1 197162 0 837541 1947 1224 0 415 Proteobacteria 1 phylum class 1807140 0 1271 6 Acidithiobacillales 2 order 1 6 1271 0 225057 5 1269 0 225058 Acidithiobacillaceae 4 family 1 Acidithiobacillus 17 genus 1 4 1265 0 119977 1 482 0 160808 Acidithiobacillus ferrivorans species species Acidithiobacillus ferrooxidans 920 0 452 1 species Acidithiobacillus caldus 0 33059 1 314 28216 0 152560 346 1 class Betaproteobacteria 250 7411 22 206389 0 144 Rhodocyclales 1 order 4748 12 2008794 0 112 Zoogloeaceae 1 family Azoarcus 47 1 genus 5 1902 0 12960 no rank 2629479 0 975 2 0 198107 1 451 species Azoarcus sp. CIB Azoarcus sp. KH32C species 1 524 0 748247 0 418699 1 436 species Azoarcus olearius 0 2067960 1 444 species Azoarcus sp. SY39 1 genus 101 Thauera 0 33057 6 2734 1290 2 2609274 0 no rank Thauera sp. MZ1T species 1 633 0 85643 species Thauera sp. K11 0 2005884 1 657 species Thauera humireducens 0 1134435 1 516 396 1 59405 0 Thauera aromatica species Thauera chlorobenzoica species 1 431 0 96773 2 Azonexaceae family 1 567 3 2008795 0 73029 0 565 2 1 genus Dechloromonas 12 species Dechloromonas aromatica 0 259537 1 553 0 75787 6 1952 1 family Rhodocyclaceae 57 Aromatoleum 4 genus 1 2 360 0 551759 0 551760 1 356 species Aromatoleum aromaticum no rank 75788 0 545 1 species Rhodocyclaceae bacterium 1898103 0 545 1 146937 0 990 2 genus 1 Azospira 22 1 968 0 146939 Azospira oryzae species order 1 Burkholderiales 1289 0 80840 233 122140 506 0 23661 42 family 1 162 Alcaligenaceae 0 222 6 8605 1 genus Achromobacter 227 700 1 217204 0 Achromobacter insolitus species species Achromobacter denitrificans 32002 0 1913 1 no rank 1 848 0 2626865 1 848 0 1758194 Achromobacter sp. AONIH1 species 1 1721 0 217203 Achromobacter spanius species Achromobacter xylosoxidans species 3196 1 85698 0 1 genus 12 Orrella 0 1921582 2 630 Orrella dioscoreae species 618 1 1851544 0 29574 0 220 2 genus 142 1 84590 0 Taylorella asinigenitalis species 1 78 0 29575 Taylorella equigenitalis species 2 160 0 90243 1 Oligella 1 genus 159 1 90245 0 Oligella urethralis species 3 876 0 290425 Advenella 7 genus 1 0 302406 1 446 species Advenella mimigardefordensis Advenella kashmirensis species 1 423 0 310575 517 0 10385 17 genus 1 Bordetella 283 Bordetella flabilis species 591 1 463014 0 700 1 463025 0 Bordetella bronchialis species Bordetella avium species 1 394 0 521 0 103855 1 536 species Bordetella hinzii Bordetella genomosp. 6 species 542 1 463024 0 species Bordetella bronchiseptica 518 0 1171 1 Bordetella petrii species 408 1 94624 0 Bordetella pertussis species 706 1 520 0 2630031 0 675 1 no rank 1 675 0 1697043 Bordetella sp. H567 species 0 1416803 1 634 species Bordetella genomosp. 9 Bordetella pseudohinzii species 1 609 0 1331258 35814 0 481 1 species Bordetella holmesii species Bordetella genomosp. 13 0 463040 1 709 Bordetella trematum species 555 1 123899 0 species Bordetella genomosp. 8 1416806 0 743 1 648 1 519 0 Bordetella parapertussis species 35 Castellaniella genus 1 683 2 359336 0 0 75697 1 648 species Castellaniella defragrans 507 0 1173 2 1 genus 11 Alcaligenes 0 511 1 1162 species Alcaligenes faecalis 85 2 1100891 0 1 Paenalcaligenes 1 genus species Paenalcaligenes hominis 0 643674 1 84 genus 1472344 0 242 1 242 1 1472345 0 Basilea psittacipulmonis species genus 1 2 Pusillimonas 305976 0 440 2 no rank 438 1 2640016 0 438 1 1007105 0 Pusillimonas sp. T7-7 species 0 75682 28 16846 family 1 Oxalobacteraceae 101 genus 846 0 1766 1 1 1766 0 847 Oxalobacter formigenes species 1 genus Janthinobacterium 37 0 29580 7 4935 species Janthinobacterium agaricidamnosum 55508 0 1918 1 368607 0 858 1 species Janthinobacterium svalbardensis no rank 2610881 0 2122 4 680 1 1938606 0 Janthinobacterium sp. LM6 species Janthinobacterium sp. Marseille species 1 373 0 375286 1236179 0 297 1 species Janthinobacterium sp. B9-8 772 1 1644131 0 Janthinobacterium sp. 1_2014MBL_MicDiv species genus 1 38 Collimonas 0 202907 4 2522 158899 0 869 1 species Collimonas fungivorans 279058 0 976 1 species Collimonas arenae 279113 0 639 1 species Collimonas pratensis 1 genus Herminiimonas 16 303379 0 504 3 0 1809410 1 223 species Herminiimonas arsenitoxidans 204773 0 265 1 species Herminiimonas arsenicoxydans 6 3206 0 963 70 Herbaspirillum 1 genus species Herbaspirillum frisingense 0 92645 1 724 341045 0 597 1 species Herbaspirillum hiltneri 369 1 2624150 0 no rank 2025949 0 369 1 species Herbaspirillum sp. meg3 0 80842 1 648 species Herbaspirillum rubrisubalbicans 1 798 0 964 Herbaspirillum seropedicae species 6 3812 0 149698 Massilia 44 1 genus 2072590 0 840 1 species Massilia sp. ZMN-3 1141883 0 646 1 species Massilia putida no rank 0 2609279 2 1612 Massilia sp. WG5 species 701 1 1707785 0 911 1 1678028 0 Massilia sp. NR 4-1 species species Massilia sp. B2 0 2045208 1 670 no rank 17 6657 0 224471 1 genus 9 Methylibium 316612 0 630 2 Methylibium petroleiphilum species 1 621 0 105560 2 887 0 318147 36 Paucibacter 1 genus 851 1 2642959 0 no rank 0 1768242 1 851 species Paucibacter sp. KCTC 42545 10 Leptothrix 1 genus 591 2 88 0 581 1 34029 0 Leptothrix cholodnii species 2 659 0 212743 Rhizobacter 36 genus 1 0 946333 1 623 species Rhizobacter gummiphilus 37 Mitsuaria genus 1 616 2 65047 0 0 2648776 1 579 no rank 0 1658665 1 579 species Mitsuaria sp. 7 966 2 93681 0 Roseateles 11 genus 1 Roseateles depolymerans species 955 1 76731 0 32012 0 817 2 genus 1 13 Thiomonas species Thiomonas intermedia 0 926 1 804 2 863 0 28067 Rubrivivax 33 genus 1 Rubrivivax gelatinosus species 1 830 0 28068 628 1 413882 0 [Polyangium] brachysporum species 7352 2 80841 0 no rank 0 1834205 1 7079 species Burkholderiales bacterium YL45 species Burkholderiales bacterium GJ-E10 0 1469502 1 273 38960 84 119060 0 Burkholderiaceae 252 1 family 0 106589 9 5766 genus 1 264 Cupriavidus 1 512 0 248026 Cupriavidus pinatubonensis species 0 82541 1 480 species Cupriavidus gilardii 119219 0 525 1 species Cupriavidus metallidurans 1143 1 106590 0 Cupriavidus necator species no rank 1545 2 2640874 0 species Cupriavidus sp. USMAA2-4 876364 0 822 1 Cupriavidus sp. USMAHM13 species 1 723 0 1389192 Cupriavidus sp. USMAA1020 species 672 1 367825 0 625 1 68895 0 Cupriavidus basilensis species Pandoraea 93 genus 1 10 3836 0 93217 0 656178 1 451 species Pandoraea vervacti 656179 0 414 1 species Pandoraea faecigallinarum 1 334 0 93222 Pandoraea sputorum species 0 93219 1 353 species Pandoraea norimbergensis species Pandoraea pulmonicola 93221 0 262 1 Pandoraea oxalativorans species 613 1 573737 0 0 445709 1 392 species Pandoraea thiooxydans 93220 0 434 1 species Pandoraea pnomenusa 0 93218 1 490 species Pandoraea apista 1 genus Burkholderia 807 0 32008 41 17354 species group 7 2237 0 111527 Burkholderia pseudomallei species 688 1 28450 0 Burkholderia mallei species 1 189 0 13373 57975 0 609 1 species Burkholderia thailandensis Burkholderia sp. MSMB617WGS species 122 1 1637831 0 1 155 0 1637837 Burkholderia sp. MSMB0266 species 0 342113 1 349 species Burkholderia oklahomensis Burkholderia sp. MSMB0852 species 125 1 1637841 0 481 1 41899 0 Burkholderia plantarii species Burkholderia glumae species 801 1 337 0 species Burkholderia gladioli 28095 0 1061 1 species group 19 8540 0 87882 species Burkholderia territorii 0 1503055 1 149 0 95485 1 482 species Burkholderia stabilis 1 391 0 60552 Burkholderia vietnamiensis species species Burkholderia cepacia 292 0 1532 1 1 280 0 488447 Burkholderia contaminans species species Burkholderia cenocepacia 0 95486 1 1389 0 87883 1 535 species Burkholderia multivorans Burkholderia ambifaria species 387 1 152480 0 152500 0 165 1 species Burkholderia dolosa 821 1 101571 0 Burkholderia ubonensis species 1 460 0 482957 Burkholderia lata species species Burkholderia latens 488446 0 243 1 species Burkholderia pseudomultivorans 0 1207504 1 318 species Burkholderia pyrrocinia 60550 0 228 1 species [Pseudomonas] mesoacidophila 0 265293 1 236 species Burkholderia diffusa 488732 0 303 1 195 1 488731 0 Burkholderia seminalis species 0 488729 1 192 species Burkholderia metallica species Burkholderia stagnalis 0 1503054 1 234 no rank 3427 11 2613784 0 0 1678678 1 375 species Burkholderia sp. HB1 Burkholderia sp. KJ006 species 1 195 0 416344 325 1 1795043 0 Burkholderia sp. PAMC 26561 species species Burkholderia sp. Bp5365 0 1740162 1 223 348 1 640512 0 Burkholderia sp. CCGE1003 species Burkholderia sp. YI23 species 486 1 1097668 0 198 1 1468409 0 Burkholderia sp. 2002721687 species 324 1 758796 0 Burkholderia sp. RPE67 species 307 1 1740163 0 Burkholderia sp. Bp7605 species Burkholderia sp. PAMC 28687 species 1 312 0 1795874 Burkholderia sp. CCGE1001 species 334 1 640510 0 12 5562 0 1822464 94 Paraburkholderia genus 1 2615204 0 413 1 no rank Paraburkholderia sp. SOS3 species 1 413 0 1926494 species Paraburkholderia sprentiae 0 948107 1 487 Paraburkholderia hospita species 1 562 0 169430 Paraburkholderia caribensis species 752 1 75105 0 species Paraburkholderia phymatum 0 148447 1 497 Paraburkholderia aromaticivorans species 518 1 2026199 0 Paraburkholderia fungorum species 519 1 134537 0 1 446 0 252970 Paraburkholderia phenoliruptrix species 1 481 0 261302 Paraburkholderia phytofirmans species 36873 0 365 1 species Paraburkholderia xenovorans Paraburkholderia terrae species 1 428 0 311230 0 1827195 1 336 genus species Burkholderia sp. RPE64 758793 0 336 1 1 genus 82 Ralstonia 0 48736 5 4985 Ralstonia solanacearum species 1 2231 0 305 species Ralstonia pickettii 0 329 1 1282 0 105219 1 682 species Ralstonia mannitolilytica Ralstonia insidiosa species 1 708 0 190721 1 genus 5 Polynucleobacter 44013 0 688 4 0 576611 1 267 species Polynucleobacter asymbioticus 1835254 0 238 1 species Polynucleobacter duraquae 0 576610 1 178 species Polynucleobacter necessarius 1 181 0 2571159 genus 1 181 0 412963 Paraburkholderia rhizoxinica species 492 Comamonadaceae family 1 59 27375 0 80864 genus 1 100 Variovorax 34072 0 3600 5 0 436515 1 748 species Variovorax boronicumulans 1250 2 663243 0 no rank 0 1795631 1 373 species Variovorax sp. PAMC 28711 877 1 2126319 0 Variovorax sp. PMC12 species 1 1502 0 34073 Variovorax paradoxus species 18 Simplicispira 1 genus 519 2 352450 0 1 501 0 2109915 Simplicispira sp. SC1-8 species 2 428 0 238749 Diaphorobacter 5 genus 1 423 1 1546149 0 Diaphorobacter polyhydroxybutyrativorans species 1 genus Alicycliphilus 11 0 201096 2 667 179636 0 656 1 species Alicycliphilus denitrificans 14 Ramlibacter genus 1 2 1260 0 174951 Ramlibacter tataouinensis species 1 1246 0 94132 genus 1 9 Polaromonas 0 52972 3 1129 Polaromonas naphthalenivorans species 479 1 216465 0 641 1 2638319 0 no rank 0 296591 1 641 species Polaromonas sp. JS666 genus 1 Hydrogenophaga 25 0 47420 4 1732 0 2610897 2 1239 no rank 1842537 0 512 1 species Hydrogenophaga sp. RAC07 species Hydrogenophaga sp. PBC 795665 0 727 1 species Hydrogenophaga crassostreae 1763535 0 468 1 genus 1 Ottowia 8 219181 0 1287 3 2109914 0 696 1 species Ottowia sp. KADR8-3 no rank 1 583 0 2645081 0 1658672 1 583 species Ottowia sp. oral taxon 894 genus 2490452 0 795 2 species Comamonadaceae bacterium A1 0 1458425 1 285 species Comamonadaceae bacterium B1 1458426 0 510 1 Melaminivora 5 1 genus 2 475 0 1649468 1 470 0 2641902 no rank species Melaminivora sp. SC2-9 0 2109913 1 470 genus 1 33 Limnohabitans 665874 0 669 3 no rank 2 636 0 2626134 species Limnohabitans sp. 63ED37-2 1678128 0 433 1 203 1 1678129 0 Limnohabitans sp. 103DPR2 species 80865 0 3197 5 1 genus 84 Delftia 1 679 0 80866 Delftia acidovorans species 906 1 180282 0 Delftia tsuruhatensis species 1528 2 2613839 0 no rank 1 679 0 1920191 Delftia sp. HK171 species Delftia sp. Cs1-4 species 1 849 0 742013 2 548 0 364316 Verminephrobacter 7 1 genus species Verminephrobacter eiseniae 0 364317 1 541 2678886 0 595 1 genus 1 595 0 2116657 Melaminivora sp. SC2-7 species 1 genus 211 Acidovorax 12916 0 4671 9 no rank 4 2502 0 2684926 species Acidovorax sp. KKS102 358220 0 806 1 696 1 1842533 0 Acidovorax sp. RAC01 species 1 449 0 1858609 Acidovorax sp. T1 species species Acidovorax sp. JS42 0 232721 1 551 Acidovorax citrulli species 467 1 80869 0 species Acidovorax avenae 80867 0 530 1 species Acidovorax ebreus 721785 0 491 1 Acidovorax sp. NA3 species 1 470 0 553814 2708 4 283 0 10 Comamonas 1 genus 515 1 1082851 0 Comamonas serinivorans species Comamonas kerstersii species 855 1 225992 0 285 0 1328 1 species Comamonas testosteroni 2 179 0 1436289 2 Candidatus Symbiobacter genus 1 0 1436290 1 177 species Candidatus Symbiobacter mobilis 5 2424 0 28065 15 Rhodoferax 1 genus 1 565 0 81479 Rhodoferax antarcticus species Rhodoferax saidenbachensis species 602 1 1484693 0 0 192843 1 532 species Rhodoferax ferrireducens species Rhodoferax koreense 0 1842727 1 710 2 533 0 33809 no rank species beta proteobacterium CB 0 543913 1 81 452 1 1904640 0 Betaproteobacteria bacterium GR16-43 species 0 32003 41 7028 1 order 64 Nitrosomonadales 927 5 90627 0 Gallionellaceae 21 1 family 298 2 96 0 5 Gallionella 1 genus species Gallionella capsiferriformans 0 370405 1 293 genus 1 4 Sideroxydans 0 314343 2 608 63745 0 604 1 species Sideroxydans lithotrophicus family 1 13 Nitrosomonadaceae 206379 0 2086 11 0 35798 3 830 genus 1 252 0 1231 Nitrosospira multiformis species 35799 0 352 1 species Nitrosospira briensis species Nitrosospira lacus 1288494 0 226 1 1 genus Nitrosomonas 3 914 0 1243 7 44577 0 123 1 species Nitrosomonas ureae species Nitrosomonas communis 44574 0 278 1 371 2 2609265 0 no rank 129 1 153948 0 Nitrosomonas sp. AL212 species species Nitrosomonas sp. Is79A3 261292 0 242 1 0 916 1 159 species Nitrosomonas eutropha Nitrosomonas europaea species 1 309 0 915 32011 0 2102 12 1 family 8 Methylophilaceae 423 2 1679002 0 genus 0 1581557 1 316 species Candidatus Methylopumilus planktonicus 1 107 0 1581680 Candidatus Methylopumilus turicensis species 1 genus 7 Methylovorus 81682 0 818 3 385 1 2634027 0 no rank species Methylovorus sp. MP688 0 887061 1 385 426 1 266009 0 Methylovorus glucosotrophus species genus 1 3 Methylotenera 0 359407 3 344 Methylotenera versatilis species 185 1 1055487 0 1 156 0 359408 Methylotenera mobilis species 205 2 16 0 1 Methylophilus 1 genus 1 204 0 2630143 no rank 204 1 1662285 0 Methylophilus sp. TWE2 species 0 404 1 304 genus 0 405 1 304 species Methylobacillus flagellatus family 2772226 0 669 4 1778653 0 354 2 genus 1 Sulfuriferula 5 no rank 0 2637784 1 349 0 1985873 1 349 species Sulfuriferula sp. AH1 0 935200 2 315 1 genus 3 Sulfuricella 312 1 649841 0 Sulfuricella denitrificans species family 1 20 Sterolibacteriaceae 2008793 0 988 5 genus 1 2 Methyloversatilis 378210 0 517 2 no rank 2639971 0 515 1 1 515 0 1842540 Methyloversatilis sp. RAC08 species 1054211 0 451 2 genus 1 Sulfuritalea 11 Sulfuritalea hydrogenivorans species 1 440 0 748811 2008790 0 192 3 family 1 Thiobacillaceae 3 genus 1 7 Thiobacillus 919 0 189 2 1 182 0 36861 Thiobacillus denitrificans species Neisseriales 135 1 order 14359 36 206351 0 53 Chromobacteriaceae family 1 5877 13 1499392 0 2 971 0 187 5 Aquaspirillum genus 1 2620219 0 966 1 no rank species Aquaspirillum sp. LM1 0 1938604 1 966 0 168470 2 935 1 genus Laribacter 5 1 930 0 168471 Laribacter hongkongensis species 1 genus 2 Pseudogulbenkiania 568394 0 871 2 no rank 869 1 2642558 0 0 748280 1 869 species Pseudogulbenkiania sp. NH8B no rank 2561 4 90153 0 28 Chromobacterium 1 genus 4 2561 0 535 no rank 1 743 0 2641838 Chromobacterium sp. ATCC 53434 species 1 743 0 2059672 Chromobacterium vaccinii species 994 1 1108595 0 Chromobacterium violaceum species 796 1 536 0 0 885864 2 486 1 genus 5 Jeongeupia 481 1 2619593 0 no rank Jeongeupia sp. USM3 species 481 1 1906741 0 family 1 Neisseriaceae 67 0 481 22 8347 genus 1 235 0 71 1 235 0 72 Simonsiella muelleri species 573 2 538 0 Eikenella 2 genus 1 1 571 0 539 Eikenella corrodens species 0 1193515 2 253 1 genus 1 Snodgrassella 252 1 1196083 0 Snodgrassella alvi species Neisseria 47 1 genus 12 6372 0 482 species Neisseria lactamica 0 486 1 594 28091 0 439 1 species Neisseria weaveri 0 488 1 480 species Neisseria mucosa species Neisseria zoodegmatis 0 326523 1 649 Neisseria sicca species 530 1 490 0 Neisseria elongata species 1 328 0 495 2623750 0 1012 2 no rank species Neisseria sp. KEM232 0 655307 1 702 Neisseria sp. 10022 species 310 1 1853276 0 species Neisseria meningitidis 487 0 1127 1 species Neisseria gonorrhoeae 485 0 522 1 Neisseria sp. 10023 species 644 1 1853278 0 705 3 59 0 11 Vitreoscilla genus 1 Vitreoscilla filiformis species 1 521 0 63 no rank 0 2627922 1 173 0 96942 1 173 species Vitreoscilla sp. C1 421605 0 142 1 no rank species Neisseriaceae bacterium DSM 100970 2052837 0 142 1 no rank 0 119066 11 839 Candidatus Accumulibacter 52 genus 1 2 324 0 327159 species Candidatus Accumulibacter phosphatis 0 327160 1 272 genus 1 5 0 189384 189385 0 5 1 species Candidatus Tremblaya princeps 1 genus 3 Kinetoplastibacterium 0 33055 6 434 species Kinetoplastibacterium blastocrithidii 233181 0 71 1 0 994696 1 38 species Candidatus Kinetoplastibacterium oncopeltii 134 1 994692 0 Candidatus Kinetoplastibacterium desouzaii species 50 1 994695 0 Candidatus Kinetoplastibacterium galatii species species Candidatus Kinetoplastibacterium crithidii 33056 0 138 1 35 1 1381133 0 genus 0 669502 1 35 species Candidatus Profftella armatura 41 1 1301080 0 genus Candidatus Nasuia deltocephalinicola species 1 41 0 1160784 subphylum 190 80328 0 68525 class 1 29 Epsilonproteobacteria 29547 0 26080 69 0 213849 64 25389 order 1 Campylobacterales 273 family 5 996 0 2771472 0 265570 3 587 1 genus Sulfurovum 4 251 1 206403 0 Sulfurovum lithotrophicum species 332 1 2646778 0 no rank 387093 0 332 1 species Sulfurovum sp. NBC37-1 8 Nitratifractor 1 genus 409 2 269260 0 0 269261 1 401 species Nitratifractor salsuginis family 2771471 0 895 3 genus 1 479 0 286130 Sulfuricurvum kujiense species 479 1 148813 0 genus 416 2 202746 0 species Sulfurimonas autotrophica 0 202747 1 282 Sulfurimonas denitrificans species 134 1 39766 0 0 72293 14 3082 family 1 4 Helicobacteraceae genus 1 16 Helicobacter 0 209 12 2763 129 1 213 0 Helicobacter cinaedi species 340 1 32025 0 Helicobacter hepaticus species species Helicobacter himalayensis 0 1591088 1 173 1 101 0 217 Helicobacter mustelae species 184 1 76936 0 Helicobacter typhlonius species 0 37372 1 219 species Helicobacter bilis 1 103 0 214 Helicobacter felis species Helicobacter acinonychis species 96 1 212 0 1 226 0 2593540 no rank 222136 0 226 1 species Helicobacter sp. MIT 01-6242 species Helicobacter cetorum 0 138563 1 143 1 1033 0 210 Helicobacter pylori species genus 315 1 843 0 1 315 0 844 Wolinella succinogenes species Campylobacteraceae 1128 1 family 41 20143 0 72294 genus 1 Sulfurospirillum 8 0 57665 9 1578 1 221 0 366522 Sulfurospirillum cavolei species 168 1 44674 0 Sulfurospirillum barnesii species 194424 0 197 1 species Sulfurospirillum halorespirans 1 181 0 66821 Sulfurospirillum multivorans species 1 162 0 65553 Sulfurospirillum deleyianum species no rank 2618290 0 641 3 1986224 0 228 1 species Sulfurospirillum sp. SL2-1 species Sulfurospirillum sp. JPD-1 0 220622 1 258 0 1581011 1 155 species Sulfurospirillum sp. UCH001 no rank 2466 5 2321108 0 1 genus Arcobacter 60 0 28196 3 1128 555 1 28199 0 Arcobacter nitrofigilis species 28197 0 513 1 species Arcobacter butzleri genus 2321187 0 592 1 Arcobacter sp. LPB0137 species 592 1 1850254 0 no rank 2321207 0 746 1 944547 0 746 1 species Arcobacter sp. L 26 14971 0 194 195 Campylobacter 1 genus 1 537 0 201 Campylobacter lari species 1 367 0 75658 Campylobacter lanienae species 0 2593542 4 846 no rank Campylobacter sp. RM16704 species 1 107 0 1500960 species Campylobacter sp. RM8964 1660074 0 343 1 0 1660073 1 92 species Campylobacter sp. RM6137 Campylobacter sp. RM12175 species 1 304 0 1660076 488546 0 190 1 species Campylobacter peloridis species Campylobacter iguaniorum 0 1244531 1 148 species Campylobacter cuniculorum 0 374106 1 289 species Campylobacter ureolyticus 827 0 189 1 Campylobacter subantarcticus species 1 193 0 497724 1 4317 0 197 Campylobacter jejuni species Campylobacter hominis species 1 204 0 76517 species Campylobacter insulaenigrae 0 260714 1 233 1 450 0 196 Campylobacter fetus species species Campylobacter curvus 0 200 1 275 198 0 157 1 species Campylobacter hyointestinalis 0 1965231 1 358 species Campylobacter pinnipediorum species Campylobacter concisus 199 0 298 1 species Campylobacter helveticus 0 28898 1 160 species Campylobacter sputorum 0 206 1 300 species Campylobacter gracilis 824 0 265 1 4632 1 195 0 Campylobacter coli species Campylobacter volucris species 1 119 0 1031542 522485 0 249 1 species Campylobacter avium Nautiliales 2 order 1 4 662 0 235899 family 2 510 0 224467 0 191291 2 510 genus 1 Nautilia 2 Nautilia profundicola species 1 508 0 244787 0 2795691 1 150 family 269258 0 150 1 genus 1 150 0 2624044 no rank species Nitratiruptor sp. SB155-2 0 387092 1 150 28221 0 54248 121 class 1 Deltaproteobacteria 160 25 19671 0 213115 196 Desulfovibrionales 1 order 213116 0 1356 4 1 family Desulfomicrobiaceae 18 Desulfomicrobium 8 1 genus 1338 3 898 0 Desulfomicrobium baculatum species 1 821 0 899 Desulfomicrobium orale species 1 509 0 132132 1 family Desulfovibrionaceae 136 194924 0 17800 18 0 2794998 1 806 genus species Desulfovibrio salexigens 0 880 1 806 0 2035811 4 2900 1 genus 33 Pseudodesulfovibrio Pseudodesulfovibrio profundus species 1 525 0 57320 Pseudodesulfovibrio indicus species 1 1301 0 1716143 1041 1 182210 0 Pseudodesulfovibrio aespoeensis species genus 1 Lawsonia 1 41707 0 192 2 species Lawsonia intracellularis 29546 0 191 1 Desulfovibrio 84 1 genus 9 12968 0 872 881 0 3078 1 species Desulfovibrio vulgaris 0 44742 1 1703 species Desulfovibrio fairfieldensis Desulfovibrio alaskensis species 1 1113 0 58180 877 1 2593640 0 no rank Desulfovibrio sp. G11 species 1 877 0 631220 Desulfovibrio desulfuricans species 2050 1 876 0 2468 1 901 0 Desulfovibrio piger species 184917 0 1145 1 species Desulfovibrio magneticus species Candidatus Desulfovibrio trichonymphae 1725232 0 450 1 genus 0 2582840 1 798 1 798 0 873 Desulfovibrio africanus species 213117 0 319 2 1 family Desulfohalobiaceae 2 genus 1 317 0 45662 species Desulfohalobium retbaense 45663 0 317 1 1 order 2 Syntrophobacterales 0 213462 9 1563 400 2 213465 0 family 3 Syntrophobacter 1 genus 2 400 0 29526 397 1 119484 0 Syntrophobacter fumaroxidans species 5 Syntrophaceae 1 family 6 1161 0 213468 1 Syntrophus 1 genus 2 516 0 43773 Syntrophus aciditrophicus species 1 515 0 316277 0 60892 1 277 genus 60893 0 277 1 species Desulfobacca acetoxidans 2 363 0 2357 1 Desulfomonile genus 1 1 362 0 2358 Desulfomonile tiedjei species order 1 Desulfuromonadales 164 69541 0 11596 24 14 7559 0 213422 74 Geobacteraceae family 1 Geobacter 79 1 genus 6668 11 28231 0 0 225194 1 727 species Geobacter bemidjiensis 1 860 0 313985 Geobacter lovleyi species 0 35554 1 485 species Geobacter sulfurreducens species Geobacter daltonii 0 1203471 1 437 0 2627627 2 1888 no rank 443143 0 967 1 species Geobacter sp. M18 921 1 443144 0 Geobacter sp. M21 species species Geobacter pickeringii 345632 0 672 1 484 1 351604 0 Geobacter uraniireducens species 0 1340425 1 539 species Geobacter anodireducens species Geobacter metallireducens 28232 0 497 1 2 817 0 392332 Geoalkalibacter 3 1 genus species Geoalkalibacter subterraneus 483547 0 814 1 Desulfuromonadaceae 87 1 family 3873 9 213421 0 5 2608 0 18 28 Pelobacter 1 genus species Pelobacter propionicus 29543 0 959 1 no rank 529 1 2620299 0 1842532 0 529 1 species Pelobacter sp. SFB93 1 546 0 19 Pelobacter carbinolicus species 1 546 0 29542 Pelobacter acetylenicus species 3 1178 0 890 12 Desulfuromonas genus 1 2614637 0 608 1 no rank 1823759 0 608 1 species Desulfuromonas sp. DDH964 species Desulfuromonas soudanensis 0 1603606 1 558 29 0 14574 36 1 order 125 Myxococcales 3 776 0 224462 suborder 0 224464 3 776 1 family 1 Kofleriaceae 0 162027 2 775 genus 1 Haliangium 28 1 747 0 80816 Haliangium ochraceum species suborder 2263 8 80812 0 1055686 0 388 3 family 1 Sandaracinaceae 3 1055688 0 385 2 1 genus Sandaracinus 16 1 369 0 927083 Sandaracinus amylolyticus species 7 Polyangiaceae 1 family 5 1875 0 49 2 482 0 50 Chondromyces 3 genus 1 Chondromyces crocatus species 479 1 52 0 0 39643 2 1386 1 genus 14 Sorangium Sorangium cellulosum species 1372 1 56 0 suborder 80811 0 11410 24 1 family 26 Anaeromyxobacteraceae 1524215 0 1938 5 0 161492 4 1912 genus 1 Anaeromyxobacter 52 no rank 0 2620896 2 984 species Anaeromyxobacter sp. Fw109-5 0 404589 1 359 447217 0 625 1 species Anaeromyxobacter sp. K species Anaeromyxobacter dehalogenans 0 161493 1 876 8 3585 0 39 Archangiaceae 67 1 family 1 genus Cystobacter 12 0 42 2 883 0 43 1 871 species Cystobacter fuscus 40 0 799 1 genus 41 0 799 1 species Stigmatella aurantiaca 0 47 2 1111 1 genus 14 Archangium species Archangium gephyra 48 0 1097 1 1 genus Melittangium 7 0 44 2 725 718 1 83453 0 Melittangium boletus species family 1 24 Myxococcaceae 31 0 5460 9 39 Corallococcus genus 1 1778 3 83461 0 Myxococcus macrosporus species 1 785 0 35 0 184914 1 954 species Corallococcus coralloides 3658 5 32 0 146 Myxococcus 1 genus Myxococcus hansupus species 1 821 0 1297742 690 1 83455 0 Myxococcus stipitatus species Myxococcus xanthus species 1 629 0 34 1372 1 33 0 Myxococcus fulvus species 427 2 1524213 0 family 2 427 0 1524214 14 Vulgatibacter 1 genus species Vulgatibacter incomptus 0 1391653 1 413 4 590 0 213113 2 Desulfurellales order 1 family 1 1 Desulfurellaceae 0 117942 3 588 genus 235 1 84404 0 Hippea maritima species 1 235 0 84405 genus 1 352 0 33001 0 33002 1 352 species Desulfurella acetivorans order 1 Desulfarculales 5 453227 0 795 4 family 1 15 Desulfarculaceae 0 453228 3 790 453229 0 775 2 genus 1 1 Desulfarculus 0 453230 1 774 species Desulfarculus baarsii 0 213118 18 5299 order 1 75 Desulfobacterales family 1 12 Desulfobulbaceae 0 213121 8 2240 Desulfurivibrio 8 genus 1 672 2 427922 0 427923 0 664 1 species Desulfurivibrio alkaliphilus Desulfobulbus 5 1 genus 647 2 893 0 1986146 0 642 1 species Desulfobulbus sp. ORNL 1 547 0 53318 genus 65555 0 547 1 species Desulfocapsa sulfexigens 1 genus Desulfotalea 1 109168 0 362 2 Desulfotalea psychrophila species 1 361 0 84980 1 family Desulfobacteraceae 13 213119 0 2984 9 1 genus Desulfatibacillum 2 0 218207 2 657 Desulfatibacillum alkenivorans species 1 655 0 259354 Desulfococcus 8 1 genus 1169 3 896 0 Desulfococcus multivorans species 492 1 897 0 species Desulfococcus oleovorans 181663 0 669 1 genus 0 2295 1 636 Desulfobacterium autotrophicum species 1 636 0 2296 28222 0 509 2 1 genus Desulfobacula 1 28223 0 508 1 species Desulfobacula toluolica 0 1553900 9 1561 class 1 Oligoflexia 1 order 1 Bdellovibrionales 5 213481 0 1160 5 1 family Bdellovibrionaceae 1 0 213483 4 1155 0 958 3 1154 genus 1 Bdellovibrio 1 1 66 0 453816 Bdellovibrio exovorus species species Bdellovibrio bacteriovorus 959 0 1087 1 1 Bacteriovoracales order 1 400 3 2024979 0 136 1 1652132 0 family genus 1652133 0 136 1 0 97084 1 136 species Halobacteriovorax marinus family 263 1 263369 0 263 1 146784 0 genus species Bacteriovorax stolpii 960 0 263 1 0 580370 5 904 1 class Zetaproteobacteria 6 9 Mariprofundales order 1 898 4 580371 0 family 0 580372 3 889 889 3 377315 0 Mariprofundus 1 1 genus Mariprofundus aestuarium species 1 564 0 1921086 0 1921087 1 324 species Mariprofundus ferrinatatus 852 436351 0 1236 672 Gammaproteobacteria 1 class 1 order Cardiobacteriales 12 0 135615 2 137 125 1 868 0 family 0 869 1 125 genus Dichelobacter nodosus species 125 1 870 0 Acidiferrobacterales 11 1 order 6 771 0 1692040 16 Acidiferrobacteraceae family 1 760 5 1692041 0 0 1692042 2 302 genus 1 3 Sulfurifustis 299 1 1675686 0 Sulfurifustis variabilis species 0 1744881 2 442 genus 1 3 Sulfuricaulis 1 439 0 1620215 Sulfuricaulis limicola species 1 order 9 Immundisolibacterales 0 1934945 4 483 1934946 0 474 3 family 1 Immundisolibacteraceae 6 Immundisolibacter 4 genus 1 2 468 0 1934947 1 464 0 1810504 Immundisolibacter cernigliae species order 1 Pasteurellales 1 0 135625 29 20770 712 0 20769 28 family 1 Pasteurellaceae 119 Pasteurella 1 1 genus 3 1334 0 745 754 0 371 1 species Pasteurella dagmatis 0 747 1 962 species Pasteurella multocida 0 697331 2 376 1 genus 4 Basfia 372 1 157673 0 [Mannheimia] succiniciproducens species genus 1 438 0 2094023 Glaesserella parasuis species 438 1 738 0 724 0 12346 6 1 genus Haemophilus 6 no rank 2609962 0 407 1 0 712310 1 407 species Haemophilus sp. oral taxon 036 1 9676 0 729 Haemophilus parainfluenzae species 758 1 249188 0 Haemophilus pittmaniae species species Haemophilus influenzae 727 0 1349 1 species [Haemophilus] ducreyi 0 730 1 150 Actinobacillus 7 genus 1 5 1670 0 713 491 1 67854 0 Actinobacillus succinogenes species species Actinobacillus equuli 0 718 1 263 1 315 0 716 Actinobacillus suis species 0 715 1 594 species Actinobacillus pleuropneumoniae genus 0 214906 1 576 species Histophilus somni 731 0 576 1 0 416916 3 1185 genus 1 1 Aggregatibacter 732 0 799 1 species Aggregatibacter aphrophilus species Aggregatibacter actinomycetemcomitans 714 0 385 1 0 155493 1 241 genus species Gallibacterium anatis 0 750 1 241 1 1149 0 476528 genus species Bibersteinia trehalosi 47735 0 1149 1 0 75984 4 1335 1 genus Mannheimia 11 0 85404 1 673 species Mannheimia varigena 1 331 0 2645054 no rank 0 1432056 1 331 species Mannheimia sp. USDA-ARS-USMARC-1261 75985 0 320 1 species Mannheimia haemolytica 135618 0 2938 12 order 1 15 Methylococcales Methylococcaceae 20 1 family 11 2923 0 403 1 232 0 39773 genus 271065 0 232 1 species Methylomicrobium alcaliphilum 38 Methylomonas genus 1 1968 5 416 0 2608980 0 673 1 no rank 673 1 1727196 0 Methylomonas sp. DH-1 species species Methylomonas koyamae 0 702114 1 555 species Methylomonas methanica 421 0 338 1 1 364 0 1538553 Methylomonas denitrificans species 1 genus 10 Methylovulum 762296 0 350 2 1704499 0 340 1 species Methylovulum psychrotolerans 2 353 0 413 10 Methylococcus genus 1 343 1 414 0 Methylococcus capsulatus species 118969 0 3317 19 order 118968 0 369 4 family 1 1 Coxiellaceae 1 156 0 134284 no rank 1592897 0 156 1 species Coxiella-like endosymbiont genus 212 2 776 0 199 1 777 0 Coxiella burnetii species no rank 2676648 0 13 1 species Coxiella endosymbiont of Amblyomma americanum 325775 0 13 1 2948 15 444 0 2 Legionellaceae 1 family genus 1 1 Tatlockia 0 465 2 135 Tatlockia micdadei species 134 1 451 0 genus 1 Legionella 4 0 445 12 2811 species Legionella lansingensis 0 45067 1 151 449 0 212 1 species Legionella hackeliae species Legionella oakridgensis 29423 0 154 1 Legionella clemsonensis species 228 1 1867846 0 1 241 0 452 Legionella spiritensis species species Legionella endosymbiont of Polyplax serrata 2005262 0 26 1 0 450 1 134 species Legionella longbeachae Legionella sainthelensi species 402 1 28087 0 Legionella waltersii species 1 211 0 66969 species Legionella pneumophila 0 446 1 863 Legionella fallonii species 1 185 0 96230 0 72274 128 78036 order 1 Pseudomonadales 331 0 468 42 12688 family 1 Moraxellaceae 55 0 497 11 1563 genus 1 Psychrobacter 84 0 45610 1 106 species Psychrobacter urativorans 330922 0 237 1 species Psychrobacter cryohalolentis no rank 196806 0 845 6 Psychrobacter sp. G species 145 1 571800 0 1 115 0 1699622 Psychrobacter sp. P2G3 species Psychrobacter sp. P11G5 species 1 146 0 1699624 0 1028416 1 131 species Psychrobacter sp. DAB_AL43B 349106 0 161 1 species Psychrobacter sp. PRwf-1 1 147 0 1720344 Psychrobacter sp. AntiMn-1 species 0 334543 1 154 species Psychrobacter arcticus species Psychrobacter alimentarius 261164 0 137 1 Acinetobacter 59 1 genus 9337 25 469 0 no rank 196816 0 1712 7 1646498 0 176 1 species Acinetobacter sp. TTH0-4 121 1 2079596 0 Acinetobacter sp. SWBY1 species 0 1407071 1 176 species Acinetobacter sp. TGL-Y2 species Acinetobacter sp. ACNIH1 1636603 0 365 1 0 1758189 1 151 species Acinetobacter sp. ACNIH2 Acinetobacter sp. NCu2D-2 species 1 334 0 1608473 Acinetobacter sp. LoGeW2-3 species 1 389 0 1808001 5 3846 0 909768 species group species Acinetobacter pittii 48296 0 863 1 Acinetobacter baumannii species 1 1130 0 470 106654 0 776 1 species Acinetobacter nosocomialis 1785128 0 572 1 species Acinetobacter lactucae Acinetobacter calcoaceticus species 505 1 471 0 species 268 1 202950 0 1 268 0 62977 Acinetobacter sp. ADP1 strain species Acinetobacter bereziniae 106648 0 566 1 species Acinetobacter oleivorans 1148157 0 181 1 1 321 0 1324350 Acinetobacter equi species 460 1 40215 0 Acinetobacter junii species species Acinetobacter soli 0 487316 1 193 0 1789224 1 162 species Acinetobacter larvae Acinetobacter johnsonii species 318 1 40214 0 0 29430 1 396 species Acinetobacter haemolyticus species Acinetobacter indicus 0 756892 1 257 108981 0 411 1 species Acinetobacter schindleri 1 187 0 40216 Acinetobacter radioresistens species Moraxella 25 1 genus 1733 5 475 0 386891 0 471 1 species Moraxella bovoculi 29433 0 267 1 species Moraxella ovis 34062 0 716 1 species Moraxella osloensis Moraxella catarrhalis species 1 254 0 480 1 family 397 Pseudomonadaceae 0 135621 85 65017 subfamily 351 0 1567 3 3 1567 0 352 Azotobacter 28 1 genus Azotobacter chroococcum species 1 975 0 353 564 1 354 0 Azotobacter vinelandii species 1 294 0 1849530 genus species Oblitimonas alkaliphila 1697053 0 294 1 0 286 80 62759 genus 1 2074 Pseudomonas 6 7480 0 136841 species group Pseudomonas aeruginosa species 1 2575 0 287 Pseudomonas alcaligenes species 1 541 0 43263 Pseudomonas citronellolis species 1 1232 0 53408 species subgroup 576 1 1232139 0 Pseudomonas furukawaii species 1 576 0 1149133 Pseudomonas resinovorans species 577 1 53412 0 species Pseudomonas mendocina 0 300 1 1979 1 252 0 244566 Pseudomonas lurida species Pseudomonas cremoricolorata species 324 1 157783 0 Pseudomonas knackmussii species 1 602 0 65741 0 216142 1 450 species Pseudomonas rhizosphaerae species Pseudomonas alkylphenolica 0 237609 1 366 0 196821 30 13386 no rank 1 467 0 2083055 Pseudomonas sp. LH1G9 species 1500686 0 592 1 species Pseudomonas sp. Os17 species Pseudomonas sp. UW4 1207075 0 444 1 species Pseudomonas sp. LPH1 0 1898684 1 566 1 385 0 1534110 Pseudomonas sp. DR 5-09 species species Pseudomonas sp. SWI6 0 2083051 1 413 1827300 0 295 1 species Pseudomonas sp. MYb193 1 337 0 1659194 Pseudomonas sp. GR 6-02 species species Pseudomonas sp. TKP 0 1415630 1 434 Pseudomonas sp. URMO17WK12:I11 species 1 557 0 1283291 2083054 0 314 1 species Pseudomonas sp. LG1D9 species Pseudomonas sp. StFLB209 0 1028989 1 477 0 1649877 1 489 species Pseudomonas sp. CCOS 191 Pseudomonas sp. M30-35 species 297 1 1981174 0 Pseudomonas sp. SWI36 species 330 1 2083052 0 Pseudomonas sp. MRSN12121 species 561 1 1611770 0 377 1 1931241 0 Pseudomonas sp. S-6-2 species species Pseudomonas sp. JY-Q 1338689 0 325 1 Pseudomonas sp. St29 species 542 1 1500687 0 species Pseudomonas sp. PONIH3 0 1636610 1 503 species Pseudomonas sp. HLS-6 2049589 0 306 1 Pseudomonas sp. XWY-1 species 463 1 2069256 0 372 1 2083053 0 Pseudomonas sp. SWI44 species 1 362 0 1259844 Pseudomonas sp. FGI182 species species Pseudomonas sp. TCU-HL1 0 1856685 1 621 615 1 1294143 0 Pseudomonas sp. ATCC 13867 species Pseudomonas sp. NC02 species 398 1 2067572 0 450 1 1930532 0 Pseudomonas sp. CC6-YY-74 species 2018067 0 417 1 species Pseudomonas sp. FDAARGOS_380 1 677 0 69328 Pseudomonas sp. VLB120 species 362 1 1583341 0 Pseudomonas cerasi species species group 9 9239 0 136843 0 200451 1 474 species Pseudomonas poae species Pseudomonas veronii 0 76761 1 439 200450 0 432 1 species Pseudomonas trivialis 0 76758 1 348 species Pseudomonas orientalis species Pseudomonas mandelii 0 75612 1 456 1 756 0 380021 Pseudomonas protegens species 47878 0 1001 1 species Pseudomonas azotoformans 4907 1 294 0 Pseudomonas fluorescens species 47879 0 426 1 species Pseudomonas corrugata species Pseudomonas parafulva 157782 0 839 1 Pseudomonas antarctica species 445 1 219572 0 0 1788301 1 346 species Pseudomonas versuta 0 136842 2 3229 species group 1 783 0 296 Pseudomonas fragi species species Pseudomonas chlororaphis 587753 0 2446 1 798 1 930166 0 Pseudomonas brassicacearum species 198620 0 753 1 species Pseudomonas koreensis Pseudomonas entomophila species 364 1 312306 0 1 427 0 1853130 Pseudomonas silesiensis species 8 6105 0 136849 species group 251701 0 799 1 species Pseudomonas syringae group genomosp. 3 species subgroup 2 1271 0 251698 species Pseudomonas savastanoi 29438 0 684 1 species Pseudomonas amygdali 47877 0 587 1 2775504 0 298 1 no rank Pseudomonas sp. Lz4W species 1 298 0 1206777 445 1 46257 0 Pseudomonas avellanae species species subgroup 2541 1 251695 0 Pseudomonas syringae species 1 2541 0 317 1 276 0 36746 Pseudomonas cichorii species 33069 0 475 1 species Pseudomonas viridiflava 6 8981 0 136845 species group 303 0 5273 1 species Pseudomonas putida 76759 0 1040 1 species Pseudomonas monteilii 0 47885 1 583 species Pseudomonas oryzihabitans 0 70775 1 389 species Pseudomonas plecoglossicida species Pseudomonas mosselii 0 78327 1 1101 595 1 47880 0 Pseudomonas fulva species 101564 0 523 1 species Pseudomonas alcaliphila 104087 0 983 1 species Pseudomonas frederiksbergensis Pseudomonas psychrotolerans species 1 637 0 237610 2 3794 0 136846 species group 436 1 74829 0 Pseudomonas balearica species 1 3358 0 578833 species subgroup 1 3358 0 316 Pseudomonas stutzeri species 25445 100 135622 0 Alteromonadales 83 order 1 Alteromonadaceae 40 1 family 8054 28 72275 0 genus 482 2 89404 0 0 300231 1 237 species Glaciecola nitratireducens no rank 0 2618684 1 245 0 983545 1 245 species Glaciecola sp. 4H-3-7+YE-5 genus 1 7 Agarivorans 0 261825 2 234 0 680279 1 227 species Agarivorans gilvus genus 1 274 0 1621534 274 1 326544 0 Paraglaciecola psychrophila species 1 genus Marinobacter 92 0 2742 10 3760 species Marinobacter similis 1420916 0 323 1 299 1 1033846 0 Marinobacter adhaerens species 83889 0 1105 3 no rank Marinobacter sp. CP1 species 1 295 0 1671721 332 1 490759 0 Marinobacter sp. BSs20148 species species Marinobacter sp. LQ44 0 1749259 1 478 2743 0 732 1 species Marinobacter hydrocarbonoclasticus 1 359 0 330734 Marinobacter psychrophilus species Marinobacter salarius species 1 508 0 1420917 species Marinobacter salinus 1874317 0 342 1 10 2766 0 226 Alteromonas 6 1 genus Alteromonas macleodii species 1 769 0 28108 305 1 287094 0 Alteromonas addita species no rank 3 562 0 2614992 0 2058133 1 197 species Alteromonas sp. MB-3u-76 127 1 1917158 0 Alteromonas sp. RW2A1 species species Alteromonas sp. Mac1 0 1777491 1 238 Alteromonas australica species 282 1 589873 0 233316 0 260 1 species Alteromonas stellipolaris Alteromonas mediterranea species 1 378 0 314275 species Alteromonas naphthalenivorans 0 715451 1 204 1751872 0 498 2 genus 1 Lacimicrobium 11 species Lacimicrobium alkaliphilum 0 1526571 1 487 1 family 30 Idiomarinaceae 267893 0 891 6 29 Idiomarina genus 1 861 5 135575 0 135577 0 163 1 species Idiomarina loihiensis 2614829 0 526 2 no rank 277 1 2055892 0 Idiomarina sp. X4 species 0 2100422 1 249 species Idiomarina sp. OT37-5b 143 1 1096243 0 Idiomarina piscisalsi species 290 2 267891 0 family 0 58050 2 290 genus 1 Moritella 6 80854 0 284 1 species Moritella viscosa 15 Pseudoalteromonadaceae family 1 25 5891 0 267888 5876 24 53246 0 Pseudoalteromonas 220 1 genus Pseudoalteromonas aliena species 248 1 247523 0 221 1 28109 0 Pseudoalteromonas nigrifaciens species 1 215 0 394751 Pseudoalteromonas arctica species Pseudoalteromonas rubra species 245 1 43658 0 species Pseudoalteromonas translucida 0 166935 1 246 478 1 288 0 Pseudoalteromonas atlantica species Pseudoalteromonas piratica species 319 1 1348114 0 species Pseudoalteromonas marina 267375 0 195 1 1 653 0 298657 Pseudoalteromonas spongiae species 5 958 0 194690 no rank 1 185 0 1720343 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 1 167 0 1514074 Pseudoalteromonas sp. NC201 species 234831 0 167 1 species Pseudoalteromonas sp. SM9913 species Pseudoalteromonas sp. 13-15 0 1761891 1 292 283699 0 147 1 species Pseudoalteromonas sp. Bsw20308 species Pseudoalteromonas tunicata 0 314281 1 150 Pseudoalteromonas haloplanktis species 1 231 0 228 species Pseudoalteromonas issachenkonii 152297 0 180 1 Pseudoalteromonas luteoviolacea species 343 1 43657 0 Pseudoalteromonas espejiana species 1 154 0 28107 Pseudoalteromonas agarivorans species 1 181 0 176102 43659 0 181 1 species Pseudoalteromonas tetraodonis Pseudoalteromonas piscicida species 1 303 0 43662 species Pseudoalteromonas phenolica 0 161398 1 155 1471 8 267889 0 family 0 1518149 2 228 genus 1 Thalassotalea 1 Thalassotalea crassostreae species 227 1 1763536 0 6 1243 0 28228 Colwellia 5 genus 1 species Colwellia psychrerythraea 0 28229 1 193 no rank 196834 0 843 3 0 1816218 1 352 species Colwellia sp. PAMC 20917 227 1 1816219 0 Colwellia sp. PAMC 21821 species Colwellia sp. MT41 species 264 1 58049 0 0 1967665 1 202 species Colwellia beringensis family 0 267894 2 486 2 486 0 67572 genus Psychromonas ingrahamii species 314 1 357794 0 no rank 1 172 0 2614957 species Psychromonas sp. CNPT3 314282 0 172 1 267890 0 7671 25 family 1 Shewanellaceae 59 0 22 24 7612 1 genus 226 Shewanella Shewanella psychrophila species 1 274 0 225848 species Shewanella pealeana 0 70864 1 256 399 1 24 0 Shewanella putrefaciens species species Shewanella baltica 0 62322 1 649 2018305 0 215 1 species Shewanella bicestrii species Shewanella piezotolerans 0 404011 1 187 1 277 0 271097 Shewanella sediminis species 1 256 0 60217 Shewanella violacea species 195 1 192073 0 Shewanella denitrificans species 271098 0 396 1 species Shewanella halifaxensis 303 1 56812 0 Shewanella frigidimarina species Shewanella woodyi species 1 247 0 60961 260364 0 336 1 species Shewanella marisflavi 196818 0 1910 6 no rank species Shewanella sp. WE21 2029986 0 148 1 0 2059264 1 344 species Shewanella sp. Pdp11 1 270 0 351745 Shewanella sp. W3-18-1 species 94122 0 462 1 species Shewanella sp. ANA-3 Shewanella sp. MR-4 species 1 341 0 60480 345 1 60481 0 Shewanella sp. MR-7 species 93973 0 191 1 species Shewanella japonica 442 1 359303 0 Shewanella loihica species species Shewanella amazonensis 0 60478 1 574 species Shewanella oneidensis 70863 0 279 1 267892 0 608 3 family 1 Ferrimonadaceae 1 0 44011 2 607 genus 1 52 Ferrimonas species Ferrimonas balearica 0 44012 1 555 27 5605 0 1706369 Cellvibrionales 18 order 1 Cellvibrionaceae 14 family 1 2686 11 1706371 0 0 316625 1 367 genus species Saccharophagus degradans 86304 0 367 1 genus 2036021 0 275 1 species Agarilytica rhodophyticola 0 1737490 1 275 genus 1 Simiduia 2 447467 0 398 2 447471 0 396 1 species Simiduia agarivorans 0 2425 2 253 genus 1 Teredinibacter 2 species Teredinibacter turnerae 2426 0 251 1 1379 4 10 0 Cellvibrio 7 1 genus 155077 0 417 1 species Cellvibrio japonicus 955 2 2624793 0 no rank Cellvibrio sp. PSBB023 species 1 384 0 1945512 1 571 0 1987723 Cellvibrio sp. PSBB006 species 1 family 10 Spongiibacteraceae 1706375 0 635 6 genus 0 630749 1 211 211 1 2631504 0 no rank 0 1620392 1 211 species Spongiibacter sp. IMCC21906 Oceanicoccus 6 1 genus 2 229 0 1084558 Oceanicoccus sagamiensis species 223 1 716816 0 Zhongshania 2 1 genus 2 185 0 1434050 1470434 0 183 1 species Zhongshania aliphaticivorans 0 1706373 5 1455 1 family 10 Microbulbiferaceae genus 1 4 Microbulbifer 0 48073 4 1445 Microbulbifer aggregans species 1 515 0 1769779 species Microbulbifer thermotolerans 0 252514 1 416 Microbulbifer agarilyticus species 510 1 260552 0 1706372 0 811 4 family 1 5 Halieaceae 1217416 0 806 3 1 genus Halioglobus 10 species Halioglobus pacificus 0 930806 1 456 species Halioglobus japonicus 930805 0 340 1 29 5117 0 72273 5 Thiotrichales 1 order 135617 0 533 3 family 1021 0 350 1 genus 0 288004 1 350 species Beggiatoa leptomitoformis genus 1 2 Thioploca 40751 0 183 2 1 181 0 40754 Thioploca ingrica species family 1 1 Francisellaceae 34064 0 2801 14 2638 12 262 0 Francisella 26 1 genus 0 263 1 745 species Francisella tularensis 549298 0 137 1 species Francisella halioticida species Francisella philomiragia 28110 0 283 1 2610885 0 351 2 no rank Francisella sp. MA067296 species 1 215 0 475375 Francisella sp. FSC1006 species 136 1 1547445 0 Francisella sp. TX077308 species 149 1 573569 0 0 954 1 165 species Francisella persica 1 140 0 622488 Francisella hispaniensis species Francisella noatunensis species 212 1 657445 0 species Francisella sp. TX077310 0 573570 1 273 1542390 0 157 1 species Francisella sp. CA97-1460 genus 0 1869285 1 162 Allofrancisella guangzhouensis species 162 1 594679 0 Piscirickettsiaceae 20 family 1 1778 11 135616 0 genus 40222 0 596 2 Methylophaga nitratireducenticrescens species 1 413 0 754476 Methylophaga frappieri species 1 183 0 754477 genus 3 401 0 34067 no rank 294 2 2621467 0 species Cycloclasticus sp. PY97N 0 728003 1 207 species Cycloclasticus sp. P1 0 385025 1 87 species Cycloclasticus zancles 1329899 0 107 1 0 1237 1 199 genus species Piscirickettsia salmonis 1238 0 199 1 28884 0 330 1 genus Hydrogenovibrio crunogenus species 330 1 39765 0 232 3 933 0 2 Thiomicrospira genus 1 species Thiomicrospira cyclica 0 147268 1 118 1 112 0 92245 Thiomicrospira aerophila species Enterobacterales 516 order 1 242 206586 0 91347 1903414 0 5294 21 family 1 73 Morganellaceae 57 1 637 0 genus 0 634113 1 57 species Arsenophonus symbiont of Lipoptena fortisetosa genus 1 Providencia 15 586 0 863 4 126385 0 280 1 species Providencia alcalifaciens Providencia stuartii species 1 403 0 588 species Providencia rettgeri 0 587 1 165 Xenorhabdus 26 genus 1 1891 6 626 0 species Xenorhabdus doucetiae 351671 0 345 1 1 410 0 628 Xenorhabdus nematophila species species Xenorhabdus hominickii 0 351679 1 340 Xenorhabdus poinarii species 1 174 0 40577 species Xenorhabdus bovienii 0 40576 1 596 57 Photorhabdus genus 1 4 734 0 29487 1 251 0 29488 Photorhabdus luminescens species Photorhabdus asymbiotica species 231 1 291112 0 574560 0 195 1 species Photorhabdus temperata 581 0 939 2 1 genus Morganella 7 species Morganella morganii 582 0 932 1 737 3 583 0 Proteus 8 1 genus 585 0 161 1 species Proteus vulgaris 568 1 584 0 Proteus mirabilis species no rank 2 726 0 451511 2 726 0 702 21 Plesiomonas genus 1 0 703 1 705 species Plesiomonas shigelloides 9854 20 1903410 0 Pectobacteriaceae 37 1 family 1374 5 84565 0 Sodalis 22 1 genus 1486991 0 426 1 species Candidatus Sodalis pierantonius 389 1 63612 0 Sodalis glossinidius species 1 443 0 1239307 Sodalis praecaptivus species species Sodalis endosymbiont of Henestaris halophilus 0 1929246 1 94 Pectobacterium 71 1 genus 3848 6 122277 0 Pectobacterium polaris species 1 601 0 2042057 species Pectobacterium wasabiae 0 55208 1 490 369 1 29471 0 Pectobacterium atrosepticum species 554 0 1645 1 species Pectobacterium carotovorum 0 1905730 1 672 species Pectobacterium parmentieri genus 1 163 Dickeya 204037 0 3898 6 species Dickeya fangzhongdai 0 1778540 1 723 0 204042 1 930 species Dickeya zeae Dickeya solani species 1 1053 0 1089444 0 204039 1 501 species Dickeya dianthicola 1 528 0 204038 Dickeya dadantii species 2 697 0 71655 Brenneria 5 genus 1 species Brenneria goodwinii 0 1109412 1 692 Hafniaceae 16 family 1 6275 14 1903412 0 genus 1 Hafnia 14 0 568 3 1574 no rank 0 2621980 1 397 Hafnia sp. CBA7124 species 397 1 1848580 0 1163 1 569 0 Hafnia alvei species 0 635 8 3878 genus 1 226 Edwardsiella no rank 1006 2 2676541 0 0 1578828 1 455 species Edwardsiella sp. EA181011 Edwardsiella sp. LADL05-105 species 551 1 1650654 0 636 0 813 1 species Edwardsiella tarda species Edwardsiella ictaluri 67780 0 410 1 0 1263550 1 469 species Edwardsiella piscicida 1821960 0 552 1 species Edwardsiella anguillarum 1 402 0 93378 Edwardsiella hoshinae species 2 807 0 82982 Obesumbacterium 90 genus 1 species Obesumbacterium proteus 82983 0 717 1 0 1903416 3 319 family 1 1 Budviciaceae 2 318 0 82984 Pragia 4 1 genus species Pragia fontium 82985 0 314 1 family 1 78 Yersiniaceae 1903411 0 20602 39 Gibbsiella 2 1 genus 512 2 929812 0 1 510 0 929813 Gibbsiella quercinecans species 1565532 0 3 1 genus Rouxiella 1 genus Yersinia 159 0 629 13 4946 0 631 1 222 species Yersinia intermedia Yersinia aldovae species 290 1 29483 0 199 1 2653513 0 no rank 199 1 1839800 0 Yersinia sp. FDAARGOS_228 species 0 1649845 3 714 species group species Yersinia pseudotuberculosis 0 633 1 344 632 0 178 1 species Yersinia pestis Yersinia similis species 1 192 0 367190 Yersinia ruckeri species 431 1 29486 0 1013 1 29484 0 Yersinia frederiksenii species Yersinia aleksiciae species 1 267 0 263819 Yersinia enterocolitica species 965 1 630 0 Yersinia rohdei species 1 236 0 29485 species Yersinia kristensenii 28152 0 450 1 1 genus 647 Serratia 0 613 16 13338 615 0 3088 1 species Serratia marcescens 876 1 82996 0 Serratia plymuthica species 1 586 0 614 Serratia liquefaciens species 1 743 0 61651 Serratia ficaria species 1 310 0 28151 Serratia proteamaculans species 1 1234 0 47917 Serratia fonticola species Serratia rubidaea species 732 1 61652 0 no rank 2647522 0 5122 8 species Serratia sp. FS14 1327989 0 668 1 Serratia sp. AS13 species 1 419 0 768493 species Serratia sp. SSNIH1 1758196 0 703 1 666 1 488142 0 Serratia sp. SCBI species Serratia sp. ATCC 39006 species 668 1 104623 0 752 1 2033438 0 Serratia sp. MYb239 species 0 768490 1 419 species Serratia sp. AS12 species Serratia sp. FGI94 671990 0 827 1 1385 4 34037 0 Rahnella 22 1 genus no rank 2 918 0 2635087 0 1805933 1 471 species Rouxiella sp. ERMR1:05 Rahnella sp. Y9602 species 447 1 741091 0 species Rahnella aquatilis 0 34038 1 445 1745211 0 340 2 1 genus Chania 3 species Chania multitudinisentens 0 1639108 1 337 family 1 Erwiniaceae 49 0 1903409 26 9399 1 54 0 51228 genus species Wigglesworthia glossinidia 51229 0 54 1 genus 557 1 32199 0 species Buchnera aphidicola 9 0 557 1 genus 2 1063 0 2100764 1 628 0 665913 Pantoea calida species 1 435 0 665914 Pantoea gaviniae species 82986 0 260 2 1 genus 16 Tatumella 0 53336 1 244 species Tatumella citrea 551 0 2590 8 1 genus Erwinia 104 Erwinia amylovora species 185 1 552 0 1 266 0 2622719 no rank 0 215689 1 266 species Erwinia sp. Ejp617 338565 0 403 1 species Erwinia tasmaniensis species Candidatus Erwinia sp. ErCipseudotaxifoliae 1922217 0 58 1 Erwinia gerundensis species 530 1 1619313 0 species Erwinia pyrifoliae 0 79967 1 255 789 1 182337 0 Erwinia billingiae species 4826 11 53335 0 242 Pantoea 1 genus 0 553 1 361 species Pantoea ananatis 1 355 0 1891675 Pantoea alhagi species species group 1654067 0 623 1 species Pantoea agglomerans 549 0 623 1 species Pantoea rwandensis 0 1076550 1 403 no rank 2630326 0 1573 3 Pantoea sp. PSNIH2 species 1 504 0 1484157 1484158 0 466 1 species Pantoea sp. PSNIH1 species Pantoea sp. At-9b 592316 0 603 1 Pantoea vagans species 1 828 0 470934 1 349 0 66269 Pantoea stewartii species Candidatus Pantoea carbekii species 92 1 1235990 0 543 0 153601 116 family 1 977 Enterobacteriaceae 1917 3 1330546 0 21 Pluralibacter genus 1 species Pluralibacter gergoviae 0 61647 1 957 [Enterobacter] lignolyticus species 1 939 0 1334193 1 genus 915 Citrobacter 0 544 14 11805 67824 0 433 1 species Citrobacter farmeri species group 0 1344959 7 6706 species Citrobacter freundii complex sp. CFNIH4 0 2077148 1 582 Citrobacter braakii species 790 1 57706 0 719 1 2077147 0 Citrobacter freundii complex sp. CFNIH3 species 1 469 0 2077149 Citrobacter freundii complex sp. CFNIH9 species Citrobacter freundii species 1 2987 0 546 0 2066049 1 424 species Citrobacter freundii complex sp. CFNIH2 Citrobacter werkmanii species 735 1 67827 0 0 35703 1 1857 species Citrobacter amalonaticus no rank 2644389 0 1013 2 1702170 0 235 1 species Citrobacter sp. FDAARGOS_156 Citrobacter sp. CFNIH10 species 778 1 1920110 0 species Citrobacter rodentium 67825 0 493 1 388 1 545 0 Citrobacter koseri species 0 579 1 517 genus 0 61648 1 517 species Kluyvera intermedia 5939 3 590 0 4 Salmonella 1 genus Salmonella enterica species 5590 1 28901 0 345 1 54736 0 Salmonella bongori species 409304 0 114 1 genus Candidatus Ishikawaella capsulata species 114 1 168169 0 10 71147 0 570 1093 Klebsiella genus 1 1 2882 0 1463165 Klebsiella quasipneumoniae species Klebsiella oxytoca species 4357 1 571 0 Klebsiella pneumoniae species 45080 1 573 0 1134687 0 1962 1 species Klebsiella michiganensis species Klebsiella variicola 0 244366 1 9798 0 2026240 1 3041 species Klebsiella quasivariicola no rank 2 1800 0 2608929 1 865 0 1934254 Klebsiella sp. M5al species 935 1 1905288 0 Klebsiella sp. LTGPAF-6F species Klebsiella aerogenes species 1 1134 0 548 5 21074 0 561 Escherichia 128 genus 1 species Escherichia coli 562 0 18455 1 species Escherichia albertii 208962 0 1000 1 Escherichia fergusonii species 1043 1 564 0 1 448 0 1499973 Escherichia marmotae species 209 Shigella genus 1 5983 4 620 0 Shigella flexneri species 1324 1 623 0 2629414 0 2638 1 no rank 1813821 0 2638 1 species Shigella sp. PAMC 28760 species Shigella dysenteriae 0 622 1 1812 204 2 1048757 0 Candidatus Moranella 1 genus 1 Candidatus Moranella endobia species 1 203 0 1048758 0 1335483 1 414 genus Shimwellia blattae species 1 414 0 563 1 genus Raoultella 33 160674 0 2522 3 1 708 0 575 Raoultella planticola species species Raoultella ornithinolytica 0 54291 1 1781 no rank 1287 17 191675 0 clade 1287 17 84563 0 1906660 0 22 1 genus 0 1778264 1 22 species Candidatus Mikella endobia genus 0 1906657 1 25 species Candidatus Doolittlea endobia 0 1778262 1 25 clade 362 3 146507 0 1199245 0 124 1 species secondary endosymbiont of Ctenarytaina eucalypti 0 568987 1 140 genus species Candidatus Hamiltonella defensa 0 138072 1 140 98 1 134287 0 secondary endosymbiont of Heteropsylla cubana species 643 7 84564 0 clade 0 203804 7 643 1 genus Candidatus Blochmannia 6 101534 0 98 1 species Candidatus Blochmannia pennsylvanicus 0 251535 1 52 species Candidatus Blochmannia vafer Candidatus Blochmannia floridanus species 1 25 0 203907 Candidatus Blochmannia chromaiodes species 43 1 251542 0 no rank 419 2 711328 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 219 1 1505596 0 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1505597 0 200 1 84 1 1906661 0 genus Candidatus Gullanella endobia species 1 84 0 1070130 genus 89 1 1682492 0 Candidatus Tachikawaea gelatinosa species 89 1 1410383 0 clade 0 199891 1 37 species secondary endosymbiont of Trabutina mannipara 1835721 0 37 1 genus 1 1 Candidatus Hoaglandella 0 1906659 2 25 24 1 1778263 0 Candidatus Hoaglandella endobia species 0 413496 8 3900 genus 1 105 Cronobacter 413502 0 478 1 species Cronobacter turicensis 408 1 413503 0 Cronobacter malonaticus species Cronobacter muytjensii species 1 543 0 413501 1 333 0 535744 Cronobacter universalis species species Cronobacter condimenti 1163710 0 517 1 1 590 0 413497 Cronobacter dublinensis species species Cronobacter sakazakii 0 28141 1 926 no rank 5 2707 0 36866 1 499 0 693444 Enterobacteriaceae bacterium strain FGI 57 species Enterobacteriaceae bacterium ENNIH1 species 558 1 2066051 0 species Plautia stali symbiont 0 891974 1 430 Enterobacteriaceae bacterium ENNIH2 species 603 1 1920109 0 0 1920128 1 617 species Enterobacteriaceae bacterium ENNIH3 1 genus 8 Cedecea 158483 0 1479 2 Cedecea neteri species 1471 1 158822 0 genus 0 401618 1 66 species Candidatus Riesia pediculicola 0 401619 1 66 1 genus Leclercia 28 83654 0 1827 4 2627398 0 1256 2 no rank species Leclercia sp. LSNIH3 0 1920116 1 569 687 1 1920114 0 Leclercia sp. LSNIH1 species 0 83655 1 543 species Leclercia adecarboxylata 15755 22 547 0 Enterobacter 1172 genus 1 no rank 9 3303 0 2608935 Enterobacter sp. HK169 species 1 235 0 1868135 Enterobacter sp. R4-368 species 481 1 1166130 0 Enterobacter sp. SA187 species 487 1 1914861 0 Enterobacter sp. CRENT-193 species 1 431 0 2051905 Enterobacter sp. 638 species 366 1 399742 0 species Enterobacter sp. ODB01 0 1827481 1 274 438 1 1692238 0 Enterobacter sp. FY-07 species 300 1 1560339 0 Enterobacter sp. E20 species Enterobacter sp. Crenshaw species 1 291 0 1977566 354276 0 11280 12 species group 257 1 1812935 0 Enterobacter cloacae complex 'Hoffmann cluster IV' species 1 4440 0 550 Enterobacter cloacae species species Enterobacter kobei 208224 0 303 1 158836 0 2590 3 species 1 Enterobacter hormaechei 1602 514 1 1296536 0 Enterobacter xiangfangensis subspecies Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 1 474 0 1812934 299767 0 323 1 species Enterobacter ludwigii species Enterobacter cancerogenus 69218 0 532 1 no rank 3 1296 0 2757714 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 species 397 1 2077137 0 species Enterobacter cloacae complex bacterium 2027919 0 462 1 0 1915310 1 437 species Enterobacter cloacae complex sp. ECNIH7 species Enterobacter asburiae 0 61645 1 1539 2199 5 1330547 0 13 Kosakonia 1 genus 0 497725 1 413 species Kosakonia oryzae 208223 0 554 1 species Kosakonia cowanii 1 636 0 1158459 Kosakonia sacchari species 583 1 283686 0 Kosakonia radicincitans species 1768 4 1330545 0 Lelliottia 14 genus 1 397 1 1907578 0 Lelliottia jeotgali species 0 69220 1 448 species Lelliottia nimipressuralis 61646 0 909 1 species Lelliottia amnigena 135619 0 16200 63 1 order Oceanospirillales 139 1 family 4 Saccharospirillaceae 255527 0 566 4 219 1 230494 0 genus 219 1 1336806 0 Reinekea forsetii species 0 1445504 2 343 1 genus Gynuella 1 Gynuella sunshinyii species 1 342 0 1445505 28256 0 8356 30 1 family 104 Halomonadaceae Salinicola 3 1 genus 2 411 0 404432 Salinicola tamaricis species 1 408 0 1771309 2 310 0 42054 Chromohalobacter 7 genus 1 303 1 158080 0 Chromohalobacter salexigens species 429 2 376488 0 Halotalea 21 1 genus 408 1 376489 0 Halotalea alkalilenta species 204286 0 457 2 genus 1 Cobetia 3 Cobetia marina species 1 454 0 28258 no rank 0 114403 3 157 genus 0 114185 1 2 0 114186 1 2 species Candidatus Carsonella ruddii 1495768 0 38 1 genus Candidatus Evansia muelleri species 38 1 1495769 0 235572 0 117 1 genus 1 117 0 91844 Candidatus Portiera aleyrodidarum species Halomonas 167 1 genus 5471 15 2745 0 450 1 1178482 0 Halomonas huangheensis species species Halomonas hydrothermalis 0 115561 1 430 Halomonas chromatireducens species 322 1 507626 0 2609666 0 2909 8 no rank 0 2136172 1 509 species Halomonas sp. SF2003 species Halomonas sp. 'Soap Lake #7' 1962264 0 331 1 Halomonas sp. R57-5 species 362 1 1610576 0 Halomonas sp. GFAJ-1 species 218 1 1118153 0 Halomonas sp. 1513 species 1 504 0 1883416 Halomonas sp. GT species 304 1 1971364 0 species Halomonas sp. KO116 0 1504981 1 350 Halomonas sp. 'Soap Lake #6' species 1 331 0 1949203 1 455 0 1897729 Halomonas aestuarii species Halomonas beimenensis species 559 1 475662 0 213554 0 179 1 species Halomonas campaniensis 1017 3 504090 0 1 Kushneria genus 1 586 1 157779 0 Kushneria marisflavi species species Kushneria konosiri 698828 0 430 1 191033 0 250 2 family 1 Oleiphilaceae 3 genus 141450 0 247 1 247 1 141451 0 Oleiphilus messinensis species 2501 10 135620 0 Oceanospirillaceae 21 family 1 260 1 187492 0 genus species Thalassolituus oleivorans 187493 0 260 1 48075 0 553 2 1 genus Marinobacterium 3 550 1 1821621 0 Marinobacterium aestuarii species genus 28253 0 879 3 196814 0 284 1 no rank species Marinomonas sp. MWYL1 400668 0 284 1 species Marinomonas posidonica 0 936476 1 287 Marinomonas mediterranea species 308 1 119864 0 Bacterioplanes 3 genus 1 2 544 0 1537406 1 541 0 1249553 Bacterioplanes sanyensis species genus 0 188907 1 244 Oleispira antarctica species 1 244 0 188908 0 224372 8 3104 family 1 Alcanivoracaceae 16 0 59753 6 2788 genus 1 24 Alcanivorax 1 777 0 1094342 Alcanivorax xenomutans species Alcanivorax pacificus species 1 532 0 1306787 0 59754 1 255 species Alcanivorax borkumensis 943 1 285091 0 Alcanivorax dieselolei species no rank 0 2638842 1 257 species Alcanivorax sp. NBRC 101098 1113728 0 257 1 300 1 2025617 0 genus Ketobacter alkanivorans species 300 1 1917421 0 461 2 224379 0 2 Hahellaceae 1 family 158481 0 459 1 genus Hahella chejuensis species 459 1 158327 0 family 1 3 Kangiellaceae 0 1920240 6 823 Kangiella 10 genus 1 820 5 261963 0 177 1 261964 0 Kangiella koreensis species 201 1 914150 0 Kangiella geojedonensis species 318 1 1561924 0 Kangiella profundi species 0 1144748 1 114 species Kangiella sediminilitoris 504 5 1240482 0 order family 1 Orbaceae 3 0 1240483 5 504 genus 1 5 Frischella 1335631 0 133 2 species Frischella perrara 0 1267021 1 128 Gilliamella 1 1 genus 2 368 0 1193503 species Gilliamella apicola 1196095 0 367 1 1 order 28 Vibrionales 135623 0 16138 42 family 1 75 Vibrionaceae 0 641 41 16110 genus 1 143 0 2042066 1755811 0 143 1 species Paraphotobacterium marinum genus 1406 3 657 0 1 399 0 74109 Photobacterium profundum species Photobacterium gaetbulicola species 1 500 0 1295392 0 38293 1 507 species Photobacterium damselae 30 13283 0 662 141 Vibrio genus 1 Vibrio scophthalmi species 357 1 45658 0 294 1 212663 0 Vibrio tasmaniensis species Vibrio cholerae species 638 1 666 0 species Vibrio anguillarum 0 55601 1 358 0 676 1 408 species Vibrio fluvialis 477 1 28173 0 Vibrio nigripulchritudo species 1 457 0 674 Vibrio mimicus species 1 209 0 1534743 Vibrio hyugaensis species species Vibrio breoganii 0 553239 1 396 1 1206 0 672 Vibrio vulnificus species species group 1 238 0 1891919 species Vibrio tubiashii 29498 0 238 1 Vibrio tapetis species 1 291 0 52443 1 243 0 687 Vibrio gazogenes species 1 631 0 190893 Vibrio coralliilyticus species 2025808 0 263 1 species Vibrio qinghaiensis 270 1 1435069 0 Vibrio tritonius species species group 0 717610 10 5423 190895 0 212 1 species Vibrio rotiferianus 177 1 766224 0 Vibrio jasicida species 0 696485 1 499 species Vibrio owensii 691 0 525 1 species Vibrio natriegens 663 0 850 1 species Vibrio alginolyticus 738 1 680 0 Vibrio campbellii species 1 1028 0 670 Vibrio parahaemolyticus species Vibrio harveyi species 445 1 669 0 species subgroup 0 2315253 2 949 Vibrio antiquarius species 279 1 150340 0 Vibrio diabolicus species 1 670 0 50719 species Vibrio furnissii 0 29494 1 295 no rank 2 688 0 2614977 227 1 1116375 0 Vibrio sp. EJY3 species species Vibrio sp. 2521-89 2014742 0 461 1 0 246861 2 322 genus 1 Grimontia 3 species Grimontia hollisae 673 0 319 1 4 881 0 511678 9 Aliivibrio genus 1 Aliivibrio wodanis species 366 1 80852 0 species Aliivibrio fischeri 0 668 1 294 Aliivibrio salmonicida species 212 1 40269 0 135624 0 15424 27 1 order 73 Aeromonadales 1 family 83 Aeromonadaceae 84642 0 15351 26 3 Zobellella 1 genus 2 709 0 347533 Zobellella denitrificans species 1 706 0 347534 genus 225143 0 382 2 1416627 0 191 1 species Oceanisphaera profunda Oceanisphaera sp. AMac2203 species 1 191 0 1903694 129577 0 688 2 genus 1 2 Oceanimonas 1 686 0 2636315 no rank 0 511062 1 686 species Oceanimonas sp. GK1 397 1 43947 0 genus Tolumonas auensis species 397 1 43948 0 703 Aeromonas 1 genus 13092 18 642 0 558964 0 600 1 species Aeromonas aquatica species Aeromonas schubertii 0 652 1 418 Aeromonas veronii species 1 1352 0 654 0 651 1 421 species Aeromonas media species Aeromonas caviae 648 0 423 1 605 1 196024 0 Aeromonas dhakensis species Aeromonas salmonicida species 1 870 0 645 948519 0 571 1 species Aeromonas rivipollensis Aeromonas hydrophila species 3130 1 644 0 0 257493 8 3999 no rank 437 1 1636607 0 Aeromonas sp. ASNIH2 species 428 1 1636606 0 Aeromonas sp. ASNIH1 species species Aeromonas sp. CA23 0 2033032 1 557 Aeromonas sp. CU5 species 595 1 2033033 0 0 1758179 1 668 species Aeromonas sp. ASNIH5 species Aeromonas sp. ASNIH7 1920107 0 379 1 396 1 1636608 0 Aeromonas sp. ASNIH3 species 1636609 0 539 1 species Aeromonas sp. ASNIH4 135614 0 24800 53 order 1 Xanthomonadales 260 family 1 Xanthomonadaceae 228 0 32033 38 20333 1 genus Xanthomonas 425 0 338 17 7773 29447 0 221 1 species Xanthomonas albilineans 1 394 0 56459 Xanthomonas vasicola species 56458 0 518 1 species Xanthomonas sacchari species Xanthomonas euvesicatoria 0 456327 1 219 0 643453 2 1487 species group species Xanthomonas fuscans 366648 0 419 1 Xanthomonas citri species 1 1068 0 346 Xanthomonas phaseoli species 263 1 1985254 0 378 1 56460 0 Xanthomonas vesicatoria species 343 0 701 1 species Xanthomonas translucens 0 339 1 1184 species Xanthomonas campestris species Xanthomonas hortorum 0 56454 1 367 442694 0 324 1 species Xanthomonas perforans species Xanthomonas oryzae 347 0 559 1 1 270 0 53413 Xanthomonas axonopodis species 366650 0 290 1 species Xanthomonas alfalfae 1 173 0 48664 Xanthomonas fragariae species 9 7742 0 40323 Stenotrophomonas 144 1 genus species Stenotrophomonas acidaminiphila 0 128780 1 1021 species group 3451 1 995085 0 species Stenotrophomonas maltophilia 0 40324 1 3451 Stenotrophomonas nitritireducens species 1 438 0 83617 216778 0 448 1 species Stenotrophomonas rhizophila no rank 4 2240 0 196198 Stenotrophomonas sp. MYb57 species 486 1 1827305 0 0 2005046 1 706 species Stenotrophomonas sp. WZN-1 624 1 1904944 0 Stenotrophomonas sp. LM091 species 424 1 1793721 0 Stenotrophomonas sp. KCTC 12332 species 3 1514 0 83618 Pseudoxanthomonas 24 1 genus species Pseudoxanthomonas spadix 415229 0 526 1 species Pseudoxanthomonas suwonensis 0 314722 1 964 0 2370 1 341 genus species Xylella fastidiosa 2371 0 341 1 1 genus Luteimonas 1 83614 0 288 2 0 2006110 1 287 species Luteimonas sp. 100111 Lysobacter 26 genus 1 2447 5 68 0 Lysobacter capsici species 654 1 435897 0 1 604 0 262324 Lysobacter gummosus species 506 1 69 0 Lysobacter enzymogenes species Lysobacter antibioticus species 1 657 0 84531 14 4207 0 1775411 54 Rhodanobacteraceae 1 family 1 genus 41 Dyella 0 231454 4 1918 0 445710 1 635 species Dyella thiooxydans 0 1379159 1 590 species Dyella jiangningensis Dyella japonica species 1 652 0 231455 0 70411 2 508 genus 1 Frateuria 8 81475 0 500 1 species Frateuria aurantia Luteibacter 8 genus 1 2 283 0 242605 0 242606 1 275 species Luteibacter rhizovicinus 0 323413 2 526 genus 1 4 Dokdonella 1 522 0 323415 Dokdonella koreensis species genus 258 1 2233801 0 Xanthomonadales bacterium D13 species 1 258 0 2021234 Rhodanobacter 10 genus 1 660 2 75309 0 650 1 666685 0 Rhodanobacter denitrificans species no rank 1805 11 118884 0 0 349742 2 467 1 genus Sedimenticola 2 1 465 0 1543721 Sedimenticola thiotaurini species clade 0 32036 3 312 species Bathymodiolus septemdierum thioautotrophic gill symbiont 0 113267 1 185 genus 1 75 0 1541743 species Candidatus Ruthia magnifica 386487 0 75 1 species Calyptogena okutanii thioautotrophic gill symbiont 0 410330 1 52 genus 272 2 655184 0 species Candidatus Thioglobus autotrophicus 0 1705394 1 165 Candidatus Thioglobus singularis species 107 1 1427364 0 198346 0 180 1 clade 186490 0 180 1 species Candidatus Baumannia cicadellinicola Thiolapillus 5 genus 1 2 253 0 1608298 species Thiolapillus brandeum 1076588 0 248 1 321 1 1524249 0 genus Pseudohongiella spirulinae species 321 1 1249552 0 Chromatiales 152 1 order 48 10323 0 135613 1676141 0 445 3 1 family Wenzhouxiangellaceae 7 1 genus 10 Wenzhouxiangella 1676142 0 438 2 Wenzhouxiangella marina species 428 1 1579979 0 338 3 1738654 0 Woeseiaceae 10 1 family 2 328 0 1738655 9 Woeseia 1 genus 319 1 1548547 0 Woeseia oceani species 2 669 0 451214 no rank 0 1273155 2 669 1 genus Thiohalobacter 6 species Thiohalobacter thiocyanaticus 0 585455 1 663 62 Ectothiorhodospiraceae 1 family 17 3883 0 72276 0 106633 6 1924 genus 1 36 Thioalkalivibrio no rank 1 204 0 2621013 396595 0 204 1 species Thioalkalivibrio sp. K90mix Thioalkalivibrio versutus species 400 1 106634 0 734 1 1033854 0 Thioalkalivibrio sulfidiphilus species species Thioalkalivibrio nitratireducens 0 186931 1 303 Thioalkalivibrio paradoxus species 247 1 108010 0 1 Alkalilimnicola genus 1 361 2 133193 0 1 360 0 351052 Alkalilimnicola ehrlichii species Acidihalobacter 14 genus 1 283 2 1765964 0 1 269 0 160660 Acidihalobacter prosperus species 85108 0 365 1 genus 0 1053 1 365 species Halorhodospira halophila genus 1 5 Spiribacter 0 1335745 3 434 Spiribacter curvatus species 208 1 1335757 0 species Spiribacter salinus 1335746 0 221 1 2 454 0 1051 13 Ectothiorhodospira 1 genus no rank 1 441 0 2684909 Ectothiorhodospira sp. BSL-9 species 1 441 0 1442136 449719 0 573 2 1 family 1 Granulosicoccaceae 437504 0 572 1 genus species Granulosicoccus antarcticus 0 437505 1 572 1 family 6 Halothiobacillaceae 0 255526 3 503 genus 0 109262 2 497 no rank 2636392 0 237 1 237 1 1860122 0 Halothiobacillus sp. LS2 species species Halothiobacillus neapolitanus 927 0 260 1 17 3760 0 1046 Chromatiaceae 43 1 family 743 2 53392 0 13 Thiodictyon 1 genus 0 1166950 1 730 species Candidatus Thiodictyon syntrophicum genus 1 81 0 1980513 Candidatus Nitrosoglobus terrae species 81 1 1630141 0 2 593 0 85076 Marichromatium 4 1 genus 0 37487 1 589 species Marichromatium purpuratum no rank 82569 0 397 1 1978339 0 397 1 species Chromatiaceae bacterium 2141T.STBD.0c.01a 1 genus Thioflavicoccus 3 0 156885 2 277 species Thioflavicoccus mobilis 0 80679 1 274 genus 1 6 Nitrosococcus 1227 0 663 4 Nitrosococcus oceani species 1 188 0 1229 Nitrosococcus halophilus species 1 214 0 133539 Nitrosococcus watsonii species 255 1 473531 0 1 genus 5 Allochromatium 85072 0 500 2 species Allochromatium vinosum 0 1049 1 495 0 13724 2 463 1 genus Thiocystis 3 species Thiocystis violascens 0 73141 1 460 0 1775403 2 308 order family 308 2 2689614 0 469322 0 308 2 genus 1 14 Steroidobacter Steroidobacter denitrificans species 294 1 465721 0 no rank 972 2 33811 0 0 1248727 1 354 species endosymbiont of unidentified scaly snail isolate Monju 1 618 0 83406 gamma proteobacterium HdN1 species 486 Alphaproteobacteria 1 class 164151 538 28211 0 Magnetococcales 2 1 order 2 240 0 1191478 family 1 238 0 1191479 genus 238 1 162171 0 1124597 0 238 1 species Magnetococcus marinus 82 25981 0 204457 149 Sphingomonadales 1 order 1 family Sphingomonadaceae 173 41297 0 20655 59 289 2 150203 0 6 Blastomonas genus 1 no rank 283 1 2626550 0 Blastomonas sp. RAC04 species 283 1 1842535 0 165697 0 2713 10 genus 1 61 Sphingopyxis Sphingopyxis granuli species 364 1 267128 0 species Sphingopyxis macrogoltabida 33050 0 526 1 206 1 117207 0 Sphingopyxis alaskensis species species Sphingopyxis terrae 0 33052 1 216 4 1056 0 2614943 no rank 1 304 0 1357916 Sphingopyxis sp. QXT-31 species Sphingopyxis sp. 113P3 species 283 1 292913 0 0 1913578 1 188 species Sphingopyxis sp. LPB0140 1866325 0 281 1 species Sphingopyxis sp. MG 284 1 1515612 0 Sphingopyxis fribergensis species 216 1 2709685 0 genus Sphingorhabdus flavimaris species 1 216 0 266812 genus 1 23 Zymomonas 541 0 856 2 Zymomonas mobilis species 833 1 542 0 15 Novosphingobium 1 genus 2997 5 165696 0 species Novosphingobium aromaticivorans 48935 0 348 1 718 1 2644732 0 no rank species Novosphingobium sp. PP1Y 0 702113 1 718 Novosphingobium resinovorum species 1 1005 0 158500 species Novosphingobium pentaromativorans 0 205844 1 911 1 genus 15 Sphingorhabdus 0 1434046 3 580 2 565 0 2614947 no rank species Sphingorhabdus sp. M41 1806885 0 313 1 species Sphingorhabdus sp. YGSMI21 2077182 0 252 1 165695 0 5669 15 1 genus Sphingobium 130 no rank 2611147 0 2422 6 294 1 627192 0 Sphingobium sp. SYK-6 species 436 1 1843368 0 Sphingobium sp. RAC03 species Sphingobium sp. EP60837 species 414 1 1855519 0 0 1315974 1 412 species Sphingobium sp. TKS 506 1 484429 0 Sphingobium sp. YBL2 species 0 407020 1 360 species Sphingobium sp. MI1205 Sphingobium baderi species 416 1 1332080 0 401 1 332056 0 Sphingobium japonicum species 462 1 13690 0 Sphingobium yanoikuyae species 332055 0 411 1 species Sphingobium indicum 0 76947 1 271 species Sphingobium herbicidovorans species Sphingobium chlorophenolicum 46429 0 515 1 245 1 120107 0 Sphingobium cloacae species 396 1 1673076 0 Sphingobium hydrophobicum species genus 289 1 2685927 0 1921510 0 289 1 species Sphingomonas sp. JJ-A5 234 2 72173 0 3 Citromicrobium 1 genus 1 231 0 2630544 no rank 231 1 1634516 0 Citromicrobium sp. JL477 species 2 494 0 1649486 Rhizorhabdus 1 genus 1 1 493 0 1850238 Rhizorhabdus dicambivorans species 13687 0 6145 15 1 genus 98 Sphingomonas species Sphingomonas koreensis 93064 0 268 1 718 2 160791 0 387 Sphingomonas wittichii species 1 strain Sphingomonas sp. DC-6 1283312 0 331 1 no rank 0 196159 6 3091 species Sphingomonas sp. MM-1 745310 0 501 1 Sphingomonas sp. LK11 species 600 1 1390395 0 Sphingomonas sp. KC8 species 1 862 0 1030157 Sphingomonas sp. NIC1 species 1 473 0 1961362 Sphingomonas sp. Cra20 species 380 1 1327635 0 1 275 0 1938607 Sphingomonas sp. LM7 species 0 1560345 1 456 species Sphingomonas panacis species Sphingomonas taxi 1549858 0 319 1 397260 0 480 1 species Sphingomonas sanxanigenens Sphingomonas hengshuiensis species 1 288 0 1609977 species Sphingomonas melonis 0 152682 1 427 5177 22 335929 0 80 Erythrobacteraceae family 1 genus 504 2 2800681 0 332 1 502682 0 Erythrobacter gangjinensis species Erythrobacter atlanticus species 1 172 0 1648404 2800685 0 255 1 genus Altererythrobacter marensis species 1 255 0 543877 361177 0 750 4 genus 1 Altererythrobacter 27 Altererythrobacter atlanticus species 1 334 0 1267766 0 361183 1 259 species Altererythrobacter epoxidivorans 0 476157 1 130 species Altererythrobacter ishigakiensis no rank 0 2800788 6 1448 1 genus Porphyrobacter 22 0 1111 3 612 0 2683265 2 590 no rank 0 2023229 1 295 species Porphyrobacter HT-58-2 species Porphyrobacter sp. LM 6 0 1896196 1 295 1041 0 836 3 genus 1 Erythrobacter 26 0 39960 1 590 species Erythrobacter litoralis 0 1112 1 220 species Porphyrobacter neustonensis genus 1 8 Croceicoccus 1295327 0 751 3 species Croceicoccus naphthovorans 0 1348774 1 434 1 309 0 450378 Croceicoccus marinus species 461 2 2800686 0 genus Altererythrobacter dongtanensis species 172 1 692370 0 0 1982042 1 289 species Altererythrobacter mangrovi genus 502 1 2800682 0 1 502 0 645517 Altererythrobacter namhicola species genus 426 2 1855416 0 Erythrobacter flavus species 212 1 192812 0 0 266951 1 214 species Erythrobacter seohaensis 1417 6 82117 0 no rank clade 230 1 62654 0 767891 0 230 1 genus 0 767892 1 230 species Candidatus Puniceispirillum marinum 991903 0 397 2 1 genus Polymorphum 29 species Polymorphum gilvum 991904 0 368 1 genus 344 1 213485 0 344 1 349221 0 Micavibrio aeruginosavorus species 16 Phreatobacter 1 genus 2 446 0 1632780 Phreatobacter sp. S-12 species 1 430 0 1868589 order 6 461 0 1921002 1 156 0 44746 family no rank 1 156 0 204454 0 86106 1 156 species endosymbiont of Acanthamoeba sp. UWC8 2 155 0 1777752 family 0 1521255 2 155 genus 1 1 Candidatus Paracaedibacter species Candidatus Paracaedibacter acanthamoebae 0 91604 1 154 1 Caedimonadaceae 1 family 3 150 0 2100208 genus 1 1 Candidatus Nucleicultrix 0 1509243 2 149 species Candidatus Nucleicultrix amoebiphila 0 1509244 1 148 54526 0 622 7 order 1 2 Pelagibacterales 497 5 1655514 0 family no rank 2 298 0 1655516 1 166 0 744985 alpha proteobacterium HIMB59 species species alpha proteobacterium HIMB5 859653 0 132 1 0 198251 3 199 1 genus 9 Candidatus Pelagibacter 198252 0 44 1 species Candidatus Pelagibacter ubique 1 146 0 2647897 no rank Candidatus Pelagibacter sp. IMCC9063 species 146 1 1002672 0 genus 1 123 0 2045213 species Candidatus Fonsibacter ubiquis 1925548 0 123 1 146 Rhodobacterales order 1 84 34930 0 204455 Rhodobacteraceae 623 family 1 34784 83 31989 0 17 Ruegeria genus 1 3 1285 0 97050 no rank 2625375 0 664 1 species Ruegeria sp. TM1040 0 292414 1 664 Ruegeria pomeroyi species 1 604 0 89184 9 Pannonibacter 1 genus 880 2 227873 0 871 1 121719 0 Pannonibacter phragmitetus species 3 Leisingera genus 1 2 613 0 191028 Leisingera methylohalidivorans species 1 610 0 133924 1 genus Sulfitobacter 2 0 60136 3 1178 820 1 1402135 0 Sulfitobacter pseudonitzschiae species 1 356 0 196795 no rank species Sulfitobacter sp. AM1-D1 1917485 0 356 1 1 844 0 58842 genus 844 1 2624628 0 no rank 2009329 0 844 1 species Sagittula sp. P11 53945 0 761 4 1 genus 2 Octadecabacter species Octadecabacter temperatus 0 1458307 1 159 Octadecabacter arcticus species 387 1 53946 0 Octadecabacter antarcticus species 1 213 0 1217908 genus 263377 0 964 2 Thiobacimonas profunda species 1 490 0 1229727 1 474 0 2640570 no rank 1792508 0 474 1 species Yangia sp. CCB-MM3 2 527 0 299261 Tateyamaria 1 genus 1 species Tateyamaria omphalii 0 299262 1 526 8 Rhodovulum genus 1 4 1789 0 34008 no rank 1035 2 2631432 0 Rhodovulum sp. P5 species 457 1 1564506 0 578 1 308754 0 Rhodovulum sp. MB263 species 0 35806 1 746 species Rhodovulum sulfidophilum 2 495 0 360528 Pelagibaca 4 1 genus species Pelagibaca abyssi 0 1250539 1 491 genus 941 1 2211641 0 941 1 245188 0 Loktanella vestfoldensis species 1579315 0 293 1 genus 293 1 1579316 0 Halocynthiibacter arcticus species genus 1 4 Celeribacter 875170 0 1604 5 369 1 1758178 0 Celeribacter ethanolicus species 1411902 0 432 1 species Celeribacter manganoxidans species Celeribacter indicus 0 1208324 1 411 species Celeribacter marinus 1397108 0 388 1 446 2 285107 0 2 Thioclava genus 1 Thioclava nitratireducens species 1 444 0 1915078 727 1 188905 0 genus 727 1 2645469 0 no rank 0 290400 1 727 species Jannaschia sp. CCS1 569 2 1097466 0 1 Defluviimonas genus 1 species Defluviimonas alba 0 1335048 1 568 5 4398 0 302485 Phaeobacter 90 1 genus Phaeobacter piscinae species 1 1029 0 1580596 Phaeobacter gallaeciensis species 1624 1 60890 0 1 1198 0 221822 Phaeobacter inhibens species species Phaeobacter porticola 1844006 0 457 1 1 758 0 74030 genus Roseovarius mucosus species 758 1 215743 0 2 587 0 1609958 Confluentimicrobium 4 genus 1 2643318 0 583 1 no rank 1 583 0 1609966 Confluentimicrobium sp. EMB200-NS6 species 0 58840 2 1107 no rank Rhodobacteraceae bacterium species 552 1 1904441 0 555 1 2033435 0 Rhodobacteraceae bacterium QY30 species 748 3 92944 0 16 Ketogulonicigenium 1 genus 463 1 92945 0 Ketogulonicigenium vulgare species 1 269 0 92947 Ketogulonicigenium robustum species genus 1 Roseibacterium 2 0 159345 2 611 species Roseibacterium elongatum 0 159346 1 609 265 0 3465 9 genus 1 Paracoccus 101 1 483 0 266 Paracoccus denitrificans species 0 147645 1 724 species Paracoccus yeei no rank 345 1 246570 0 0 1529068 1 345 species Paracoccus sp. BM15 34003 0 365 1 species Paracoccus aminophilus species Paracoccus sp. CBA4604 0 2065379 1 345 1 463 0 1077935 Paracoccus zhejiangensis species species Paracoccus aminovorans 34004 0 361 1 1 278 0 1945662 Paracoccus contaminans species Marinovum 3 genus 1 545 2 367771 0 species Marinovum algicola 0 42444 1 542 genus 1 669 0 74032 Antarctobacter heliothermus species 1 669 0 74033 1284657 0 481 1 genus Planktomarina temperata species 1 481 0 1284658 1417 4 478070 0 Labrenzia 42 1 genus 2648686 0 923 2 no rank 0 2021862 1 477 species Labrenzia sp. VG12 Labrenzia sp. CP4 species 446 1 1674922 0 Labrenzia aggregata species 452 1 187304 0 1 genus Dinoroseobacter 2 309512 0 325 2 1 323 0 215813 Dinoroseobacter shibae species 1260 3 2433 0 130 Roseobacter genus 1 42443 0 582 1 species Roseobacter litoralis 1 548 0 2434 Roseobacter denitrificans species genus 0 1759396 1 481 481 1 2622455 0 no rank species Marivivens sp. JLT3646 1920883 0 481 1 genus 0 119541 1 257 0 441209 1 257 species Rhodobaca barguzinensis 0 1060 5 2527 1 genus 17 Rhodobacter 0 1063 1 975 species Rhodobacter sphaeroides species Rhodobacter capsulatus 0 1061 1 864 no rank 671 2 196779 0 0 1850250 1 287 species Rhodobacter sp. LPB0142 species Rhodobacter sp. CZR27 0 2033869 1 384 genus 0 1649279 1 609 species Ruegeria mobilis 0 379347 1 609 3 129 0 255473 order 3 129 0 255474 5 Parvularculaceae 1 family Parvularcula 4 genus 1 2 124 0 208215 species Parvularcula bermudensis 0 208216 1 120 order 2 359 0 2800059 0 2800061 2 359 family genus 1 15 Maricaulis 0 74317 2 359 species Maricaulis maris 74318 0 344 1 1 order 233 Rhodospirillales 204441 0 23196 62 family 1 Rhodospirillaceae 215 0 41295 28 13392 1543705 0 1279 2 genus 1 20 Nitrospirillum 1 1259 0 28077 Nitrospirillum amazonense species genus 1 322 0 1612157 1 322 0 1084 Pararhodospirillum photometricum species genus 0 1804663 1 164 Haematospirillum jordaniae species 1 164 0 1549855 1 genus Magnetospirillum 45 0 13134 5 2722 0 55518 1 834 species Magnetospirillum gryphiswaldense no rank 2 1182 0 2617991 species Magnetospirillum sp. ME-1 1639348 0 574 1 1663591 0 608 1 species Magnetospirillum sp. XM-1 0 84159 1 661 species Magnetospirillum magneticum genus 1 Rhodospirillum 7 1081 0 1266 3 678 1 34018 0 Rhodospirillum centenum species 581 1 1085 0 Rhodospirillum rubrum species Azospirillum 67 genus 1 4494 5 191 0 species Azospirillum lipoferum 193 0 1516 1 0 1226968 1 437 species Azospirillum humicireducens 1417 1 192 0 Azospirillum brasilense species 1057 1 528244 0 Azospirillum thiophilum species genus 1 Niveispirillum 3 0 1543704 2 806 803 1 1612173 0 Niveispirillum cyanobacteriorum species 1 genus Thalassospira 15 168934 0 895 3 species Thalassospira xiamenensis 0 220697 1 370 species Thalassospira sp. CSC3H3 2048283 0 510 1 128 1 1263978 0 genus 1263979 0 128 1 species Candidatus Endolissoclinum faulkneri 716 2 171436 0 Tistrella 12 1 genus Tistrella mobilis species 704 1 171437 0 1 genus Magnetospira 2 1182780 0 385 2 1 383 0 2685734 no rank 0 1288970 1 383 species Magnetospira sp. QH-2 137 Acetobacteraceae 1 family 33 9571 0 433 genus 1 36 Roseomonas 125216 0 1274 3 257708 0 570 1 species Roseomonas gilardii no rank 668 1 2617492 0 species Roseomonas sp. FDAARGOS_362 2018065 0 668 1 Gluconobacter 8 1 genus 3 726 0 441 Gluconobacter albidus species 295 1 318683 0 442 0 423 1 species Gluconobacter oxydans 3 Neoasaia 1 genus 231 2 320496 0 320497 0 228 1 species Neoasaia chiangmaiensis genus 1 Granulibacter 4 0 364409 2 726 Granulibacter bethesdensis species 1 722 0 364410 8 3076 0 434 24 Acetobacter 1 genus subgenus 151157 0 272 1 0 435 1 272 species Acetobacter aceti Acetobacter pomorum species 1 281 0 65959 1 991 0 438 Acetobacter pasteurianus species 1076596 0 398 1 species Acetobacter persici 1 495 0 104102 Acetobacter tropicalis species 1 454 0 446692 Acetobacter senegalensis species species Acetobacter oryzifermentans 0 1633874 1 161 genus 1 Acidiphilium 25 522 0 510 3 species Acidiphilium multivorum 0 62140 1 233 Acidiphilium cryptum species 252 1 524 0 Gluconacetobacter 2 1 genus 429 2 89583 0 species Gluconacetobacter diazotrophicus 0 33996 1 427 genus 1 498 0 153497 Kozakia baliensis species 498 1 153496 0 1 genus 54 Komagataeibacter 1434011 0 1499 5 556 1 28448 0 Komagataeibacter xylinus species 1 306 0 265960 Komagataeibacter nataicola species 0 33995 1 280 species Komagataeibacter europaeus 1 303 0 1177712 Komagataeibacter medellinensis species 1 genus Asaia 1 0 91914 2 217 216 1 91915 0 Asaia bogorensis species genus 1602345 0 248 1 Parasaccharibacter apium species 1 248 0 1510841 order 1 20 Caulobacterales 0 204458 20 7106 19 7086 0 76892 133 Caulobacteraceae 1 family 75 0 3017 6 genus 1 Caulobacter 60 species Caulobacter mirabilis 0 69666 1 360 2648921 0 672 1 no rank Caulobacter sp. K31 species 672 1 366602 0 species Caulobacter segnis 88688 0 570 1 Caulobacter henricii species 392 1 69395 0 155892 0 963 1 species Caulobacter vibrioides no rank 153 1 81440 0 species Caulobacteraceae bacterium OTSz_A_272 1759059 0 153 1 20 0 703 2 1 genus Phenylobacterium 6 species Phenylobacterium zucineum 284016 0 697 1 41275 0 2674 7 genus 1 29 Brevundimonas Brevundimonas vesicularis species 1 615 0 41276 no rank 3 1403 0 2622653 0 1938605 1 405 species Brevundimonas sp. LM2 442 1 1532555 0 Brevundimonas sp. DS20 species 0 1827469 1 556 species Brevundimonas sp. GW460-12-10-14-LB2 0 588932 1 342 species Brevundimonas naejangsanensis 285 1 74313 0 Brevundimonas subvibrioides species 76890 0 406 2 1 genus 21 Asticcacaulis species Asticcacaulis excentricus 0 78587 1 385 6 849 0 2800060 order 69657 0 849 6 family 1 22 Hyphomonadaceae 3 631 0 85 5 Hyphomonas 1 genus 81032 0 371 1 species Hyphomonas neptunium 255 1 2630699 0 no rank Hyphomonas sp. Mor2 species 255 1 1906738 0 2 196 0 2723 2 Hirschia 1 genus Hirschia baltica species 194 1 2724 0 order 1 Rickettsiales 22 766 0 3159 53 26 1798 0 775 1 Rickettsiaceae 1 family 201 1 2115980 0 genus 0 2115978 1 201 species Candidatus Phycorickettsia trachydisci 33988 0 1596 24 tribe 303 1 69474 0 genus species Orientia tsutsugamushi 0 784 1 303 175 Rickettsia 1 genus 1293 23 780 0 no rank 1 88 0 114295 88 1 337479 0 Rickettsia endosymbiont of Bemisia tabaci species 17 556 0 114277 species group species Rickettsia australis 787 0 147 1 35794 0 1 1 species Rickettsia slovaca Rickettsia peacockii species 35 1 47589 0 0 35788 1 5 species Rickettsia africae Rickettsia akari species 1 42 0 786 3 1 1105106 0 Rickettsia philipii species species Rickettsia japonica 35790 0 5 1 Rickettsia massiliae species 1 8 0 35791 783 0 10 1 species Rickettsia rickettsii 33992 0 24 1 species Rickettsia rhipicephali 33989 0 49 1 species Rickettsia amblyommatis species Rickettsia monacensis 109232 0 125 1 Rickettsia heilongjiangensis species 1 22 0 226665 species Rickettsia felis 0 42862 1 59 species Rickettsia montanensis 0 33991 1 11 2 1 35792 0 Rickettsia parkeri species species Rickettsia conorii 0 781 1 8 2 255 0 114292 species group 1 98 0 785 Rickettsia typhi species 782 0 157 1 species Rickettsia prowazekii species group 1129742 0 219 2 species Rickettsia canadensis 0 788 1 70 149 1 33990 0 Rickettsia bellii species 2 65 0 1328881 2 Candidatus Midichloriaceae 1 family genus 1 63 0 411566 1 63 0 234827 Candidatus Midichloria mitochondrii species no rank 1 142 0 1699067 Rickettsiales bacterium Ac37b species 1 142 0 1528098 942 0 1132 23 1 family 1 Anaplasmataceae genus 1 Ehrlichia 5 0 943 6 488 0 106178 4 370 species group species Ehrlichia muris 0 35795 1 51 1 134 0 944 Ehrlichia canis species 1 31 0 779 Ehrlichia ruminantium species species Ehrlichia chaffeensis 945 0 154 1 no rank 106181 0 113 1 113 1 391036 0 Ehrlichia sp. HF species 356 8 952 0 tribe 0 953 8 356 1 genus 2 Wolbachia 0 2640676 7 354 no rank 70 1 163164 0 Wolbachia endosymbiont of Drosophila melanogaster species 0 100901 1 39 species Wolbachia endosymbiont of Onchocerca ochengi Wolbachia endosymbiont of Onchocerca volvulus species 38 1 77551 0 246273 0 39 1 species Wolbachia endosymbiont of Cimex lectularius 1 39 0 66084 Wolbachia sp. wRi species 0 80849 1 55 species Wolbachia endosymbiont of Brugia malayi 0 77038 1 74 species Wolbachia endosymbiont of Drosophila simulans 4 113 0 33993 Neorickettsia 1 genus 1 1 22 0 951 Neorickettsia sennetsu species 0 33994 1 49 species Neorickettsia helminthoeca species Neorickettsia risticii 0 950 1 41 1 Anaplasma 1 genus 4 174 0 768 Anaplasma centrale species 41 1 769 0 species Anaplasma marginale 770 0 41 1 91 1 106179 0 species group 91 1 948 0 Anaplasma phagocytophilum species 1 order 687 Rhizobiales 0 356 204 65216 Rhizobiaceae 298 family 1 49 21290 0 82115 genus 34019 0 425 5 34021 0 62 1 species Candidatus Liberibacter asiaticus 1 45 0 309868 Candidatus Liberibacter americanus species 112 1 556287 0 Candidatus Liberibacter solanacearum species 1 40 0 1273132 Liberibacter crescens species Candidatus Liberibacter africanus species 166 1 34020 0 10 3912 0 227292 no rank Ensifer 17 1 genus 778 3 106591 0 1 370 0 106592 Ensifer adhaerens species 391 1 716925 0 Ensifer sojae species Sinorhizobium 81 genus 1 3134 7 28105 0 789 1 663276 0 species group species Sinorhizobium fredii 380 0 789 1 species Sinorhizobium americanum 0 194963 1 419 2 650 0 2613772 no rank Sinorhizobium sp. RAC02 species 366 1 1842534 0 284 1 794846 0 Sinorhizobium sp. CCBAU 05631 species 0 110321 1 443 species Sinorhizobium medicae 0 382 1 752 species Sinorhizobium meliloti 31 16039 0 227290 no rank 0 379 22 11082 genus 1 Rhizobium 809 384 0 2576 1 species Rhizobium leguminosarum 2613769 0 4479 16 no rank 1 300 0 2028343 Rhizobium sp. 10195 species 1 1 0 1703967 Rhizobium sp. N741 species 1 170 0 1301032 Rhizobium sp. IE4771 species 140 1 2020313 0 Rhizobium sp. TAL182 species species Rhizobium sp. Y9 1914541 0 304 1 species Rhizobium sp. N324 0 1703969 1 434 1981173 0 255 1 species Rhizobium sp. NXC14 species Rhizobium sp. CIAT894 2020312 0 389 1 Rhizobium sp. NXC24 species 1 525 0 2048897 species Rhizobium sp. ACO-34A 0 1571470 1 427 403 1 1125847 0 Rhizobium sp. NT-26 species 0 424182 1 309 species Rhizobium sp. IRBG74 Rhizobium sp. N731 species 1 131 0 1703966 species Rhizobium sp. N1314 0 1703961 1 131 Rhizobium sp. S41 species 1 305 0 1869170 2020311 0 255 1 species Rhizobium sp. Kim5 398 0 427 1 species Rhizobium tropici 1 873 0 396 Rhizobium phaseoli species species Rhizobium gallicum 0 56730 1 607 1 1311 0 29449 Rhizobium etli species genus 1 Neorhizobium 19 1525371 0 770 2 399 0 751 1 species Neorhizobium galegae 1 genus 75 Agrobacterium 0 357 7 4187 species Agrobacterium rhizogenes 0 359 1 575 373 0 533 1 species Agrobacterium vitis species group 2315 2 1183400 0 Agrobacterium fabrum species 394 1 1176649 0 species Agrobacterium tumefaciens 0 358 1 1921 no rank 2632611 0 689 2 species Agrobacterium sp. RAC06 1842536 0 280 1 861208 0 409 1 species Agrobacterium sp. H13-3 1 genus 2 Shinella 323620 0 616 2 no rank 2643062 0 614 1 Shinella sp. HZN7 species 614 1 879274 0 0 119045 15 7157 1 family 57 Methylobacteriaceae 3 2548 0 2282523 genus 0 29429 1 327 species Methylobacterium zatmanii 0 223967 1 764 species Methylobacterium populi species Methylobacterium extorquens 0 408 1 1457 1 genus 186 Methylobacterium 407 0 3920 9 species Methylobacterium aquaticum 0 270351 1 620 2615210 0 1404 3 no rank Methylobacterium sp. AMS5 species 388 1 925818 0 0 426117 1 531 species Methylobacterium sp. 4-46 485 1 1479019 0 Methylobacterium sp. C1 species 439 1 114616 0 Methylobacterium nodulans species 0 31998 1 491 species Methylobacterium radiotolerans 334852 0 401 1 species Methylobacterium oryzae Methylobacterium phyllosphaerae species 1 379 0 418223 632 2 186650 0 Microvirga 16 1 genus 1 616 0 1882682 Microvirga ossetica species no rank 0 119042 6 1407 0 1572860 2 406 1 genus 38 Hartmannibacter species Hartmannibacter diazotrophicus 1482074 0 368 1 0 1484898 2 453 1 genus Methyloceanibacter 7 species Methyloceanibacter caenitepidi 0 1384459 1 446 0 1734920 2 548 1 genus 20 Pseudorhodoplanes Pseudorhodoplanes sinuspersici species 528 1 1235591 0 Chelatococcaceae 3 family 1 979 4 2036754 0 1 genus Chelatococcus 56 28209 0 976 3 0 444444 1 386 species Chelatococcus daeguensis 1 534 0 2638111 no rank Chelatococcus sp. CO-6 species 534 1 1702325 0 1 family Phyllobacteriaceae 28 69277 0 6900 20 Nitratireductor 15 1 genus 527 2 245876 0 Nitratireductor basaltis species 512 1 472175 0 4467 9 68287 0 111 Mesorhizobium 1 genus 524 1 2066070 0 Mesorhizobium japonicum species 1670800 0 402 1 species Mesorhizobium sp. B7 652 1 39645 0 Mesorhizobium ciceri species species Mesorhizobium opportunistum 0 593909 1 483 species Mesorhizobium loti 381 0 583 1 0 536018 1 688 species Mesorhizobium australicum Mesorhizobium amorphae species 1 434 0 71433 590 1 325217 0 no rank Mesorhizobium sp. WSM1497 species 1 590 0 278153 506 2 449972 0 Chelativorans 7 1 genus 0 2643807 1 499 no rank species Chelativorans sp. BNC1 0 266779 1 499 2 649 0 31988 Aminobacter 47 1 genus 1 602 0 83263 Aminobacter aminovorans species 346 2 274591 0 Hoeflea 17 genus 1 2614931 0 329 1 no rank Hoeflea sp. IMCC20628 species 1 329 0 1620421 2 377 0 28100 11 Phyllobacterium 1 genus species Phyllobacterium zundukense 0 1867719 1 366 4 Xanthobacteraceae 1 family 7 1978 0 335928 0 6 2 788 genus 1 Azorhizobium 22 species Azorhizobium caulinodans 7 0 766 1 2 447 0 152053 8 Starkeya genus 1 0 921 1 439 species Starkeya novella 739 2 279 0 2 Xanthobacter genus 1 1 737 0 280 Xanthobacter autotrophicus species 1 family 5 Bartonellaceae 772 0 2950 18 773 0 2945 17 1 genus Bartonella 15 Bartonella vinsonii species 1 174 0 33047 Bartonella apis species 1 641 0 1686310 species Bartonella tribocorum 0 85701 1 125 Bartonella bacilliformis species 96 1 774 0 1 102 0 38323 Bartonella henselae species 108 1 1318743 0 Bartonella ancashensis species Bartonella australis species 94 1 388640 0 species Bartonella quintana 803 0 214 1 Bartonella clarridgeiae species 1 271 0 56426 no rank 0 2645622 6 967 0 1933912 1 159 species Bartonella sp. Raccoon60 species Bartonella sp. JB15 0 1933906 1 152 species Bartonella sp. JB63 1933907 0 155 1 0 1933910 1 157 species Bartonella sp. A1379B 194 1 515256 0 Bartonella sp. 1-1C species Bartonella sp. WD16.2 species 1 150 0 1933904 1 138 0 33045 Bartonella grahamii species 0 255475 7 2095 family 1 9 Aurantimonadaceae Martelella 43 1 genus 1727 4 293088 0 Martelella endophytica species 538 1 1486262 0 1 625 0 2629616 no rank species Martelella sp. AD-3 686597 0 625 1 1 521 0 293089 Martelella mediterranea species genus 1 34 Aureimonas 414371 0 359 2 325 1 2615206 0 no rank 325 1 1349819 0 Aureimonas sp. AU20 species 1 Beijerinckiaceae 1 family 763 4 45404 0 384 1 532 0 genus Beijerinckia indica species 384 1 533 0 1 genus Methylocella 3 0 120652 2 378 0 199596 1 375 species Methylocella silvestris Hyphomicrobiaceae 27 family 1 4480 18 45401 0 0 1082930 2 275 1 genus 3 Pelagibacterium species Pelagibacterium halotolerans 0 531813 1 272 0 81 4 1154 1 genus 11 Hyphomicrobium species Hyphomicrobium denitrificans 0 53399 1 274 0 1427356 1 502 species Hyphomicrobium nitrativorans 367 1 2619925 0 no rank Hyphomicrobium sp. MC1 species 367 1 717785 0 Blastochloris 8 1 genus 530 2 59282 0 Blastochloris viridis species 1 522 0 1079 genus 1 210 0 119044 0 1608628 1 210 species Candidatus Filomicrobium marinum 0 1068 2 326 1 genus Rhodomicrobium 1 1069 0 325 1 species Rhodomicrobium vannielii 0 46913 4 1500 genus 1 33 Devosia 3 1467 0 196773 no rank species Devosia sp. I507 0 2083786 1 402 Devosia sp. H5989 species 486 1 1643450 0 0 1736675 1 579 species Devosia sp. A16 30 Rhodoplanes 1 genus 2 458 0 29407 1 428 0 2619116 no rank Rhodoplanes sp. Z2-YC6860 species 1 428 0 674703 41294 0 10235 26 1 family 152 Bradyrhizobiaceae 911 0 486 3 genus 1 Nitrobacter 12 248 1 913 0 Nitrobacter winogradskyi species 912 0 226 1 species Nitrobacter hamburgensis 0 85413 5 1686 genus 1 69 Bosea no rank 1160 3 2653178 0 1 392 0 1842539 Bosea sp. RAC05 species species Bosea sp. PAMC 26642 1792307 0 350 1 species Bosea sp. AS-1 0 2015316 1 418 Bosea vaviloviae species 1 457 0 1526658 1 genus 5 Oligotropha 0 40136 2 175 170 1 40137 0 Oligotropha carboxidovorans species 0 1073 2 2694 1 genus 15 Rhodopseudomonas 0 1076 1 2679 species Rhodopseudomonas palustris 374 0 4902 11 1 genus 120 Bradyrhizobium 310 1 1274631 0 Bradyrhizobium icense species Bradyrhizobium oligotrophicum species 405 1 44255 0 708 1 1355477 0 Bradyrhizobium diazoefficiens species 0 375 1 697 species Bradyrhizobium japonicum 2631580 0 2662 6 no rank Bradyrhizobium sp. BTAi1 species 395 1 288000 0 Bradyrhizobium sp. SK17 species 552 1 2057741 0 487 1 115808 0 Bradyrhizobium sp. ORS 285 species species Bradyrhizobium sp. CCGE-LA001 1223566 0 398 1 1 351 0 114615 Bradyrhizobium sp. ORS 278 species species Bradyrhizobium sp. 376 0 479 1 2 140 0 1649510 6 Variibacter genus 1 0 1333996 1 134 species Variibacter gotjawalensis 6 848 0 31993 Methylocystaceae 31 family 1 431 2 425 0 Methylosinus 23 genus 1 species Methylosinus trichosporium 426 0 408 1 1 genus 5 Methylocystis 0 133 3 386 655015 0 263 1 species Methylocystis bryophila no rank 2625913 0 118 1 0 187303 1 118 species Methylocystis sp. SC2 0 118882 20 3219 family 1 10 Brucellaceae genus 1 5 Ochrobactrum 0 528 5 1844 495 1 529 0 Ochrobactrum anthropi species Ochrobactrum sp. A44 species 451 1 271865 0 419475 0 441 1 species Ochrobactrum pseudogrignonense species Ochrobactrum pituitosum 571256 0 452 1 1365 14 234 0 Brucella 546 genus 1 65 1 36855 0 Brucella canis species Brucella pinnipedialis species 1 70 0 120576 Brucella vulpis species 93 1 981386 0 1 9 0 235 Brucella abortus species 120577 0 98 1 species Brucella ceti no rank 368 4 2632610 0 species Brucella sp. 2002734562 0 1891098 1 9 Brucella sp. 141012304 species 1 93 0 1885919 145 1 1149952 0 Brucella sp. 09RB8471 species 1 121 0 1844051 Brucella sp. 09RB8910 species species Brucella microti 0 444163 1 21 Brucella ovis species 19 1 236 0 Brucella suis species 38 1 29461 0 38 1 29459 0 Brucella melitensis species 1 family Rhodobiaceae 1 119043 0 228 3 1 genus 4 Parvibaculum 256616 0 227 2 species Parvibaculum lavamentivorans 0 256618 1 223 349 2 68297 0 phylum class 2 349 0 203486 order 349 2 203487 0 family 0 203488 2 349 2 349 0 13 genus 1 206 0 14 Dictyoglomus thermophilum species 0 513050 1 143 species Dictyoglomus turgidum phylum 200918 0 6366 39 1 class Thermotogae 6 188708 0 6366 39 1752 7 1643947 0 order family 1752 7 1643949 0 1 Defluviitoga 1 genus 361 2 1511648 0 0 1006576 1 360 species Defluviitoga tunisiensis 0 160798 3 1225 1 genus 8 Marinitoga 0 2640159 1 644 no rank Marinitoga sp. 1137 species 644 1 1545835 0 species Marinitoga piezophila 149715 0 573 1 0 28236 2 166 genus 1 1 Petrotoga 165 1 69499 0 Petrotoga mobilis species order 1643946 0 391 5 5 391 0 1643948 7 Kosmotogaceae family 1 genus 1 Mesotoga 3 1184396 0 164 2 Mesotoga prima species 161 1 1184387 0 genus 0 651456 2 220 651457 0 93 1 species Kosmotoga olearia 0 1330330 1 127 species Kosmotoga pacifica 7 Thermotogales order 1 26 4217 0 2419 2460 17 188709 0 4 Thermotogaceae family 1 10 Pseudothermotoga genus 1 905 5 1643951 0 Pseudothermotoga hypogea species 190 1 57487 0 0 177758 1 287 species Pseudothermotoga lettingae species Pseudothermotoga thermarum 119394 0 141 1 0 38322 1 277 species Pseudothermotoga elfii 0 2335 11 1551 genus 1 Thermotoga 75 Thermotoga profunda species 87 1 1508420 0 Thermotoga petrophila species 1 134 0 93929 1 96 0 1508419 Thermotoga caldifontis species 0 2337 1 146 species Thermotoga neapolitana Thermotoga maritima species 1 235 0 2336 0 93930 1 201 species Thermotoga naphthophila 577 4 2631113 0 no rank 1 134 0 1157948 Thermotoga sp. 2812B species 142 1 126738 0 Thermotoga sp. RQ7 species Thermotoga sp. Cell2 species 1 151 0 1157947 150 1 126740 0 Thermotoga sp. RQ2 species Fervidobacteriaceae 1 1 family 8 1750 0 1643950 genus 2422 0 794 3 species Fervidobacterium islandicum 2423 0 184 1 93466 0 293 1 species Fervidobacterium pennivorans 317 1 2424 0 Fervidobacterium nodosum species 955 4 2420 0 genus 0 2421 1 316 species Thermosipho africanus Thermosipho melanesiensis species 155 1 46541 0 2 484 0 2676525 no rank Thermosipho sp. 1070 species 1 258 0 1437364 1462747 0 226 1 species Thermosipho sp. 1063 0 508458 9 1985 phylum Synergistia 9 1 class 9 1985 0 649775 5 Synergistales order 1 1976 8 649776 0 270 Synergistaceae family 1 7 1971 0 649777 1 86 0 49894 genus species Acetomicrobium mobile 97477 0 86 1 genus 336260 0 170 1 species Thermovirga lienii 336261 0 170 1 0 81461 1 158 genus 0 81462 1 158 species Thermanaerovibrio acidaminovorans 0 81466 1 149 genus species Aminobacterium colombiense 0 81468 1 149 4 Cloacibacillus genus 1 2 1138 0 508459 0 1197717 1 1134 species Cloacibacillus porcorum no rank 2323 0 257 3 257 3 1783234 0 clade 115 1 95818 0 phylum 1895827 0 115 1 no rank 2056494 0 115 1 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 clade 0 95901 2 142 class 0 2497643 2 142 order 142 2 2497644 0 142 2 2497645 0 family 0 1551504 2 142 1 genus Candidatus Babela 2 species Candidatus Babela massiliensis 0 673862 1 140 0 200783 23 2715 phylum 1 class Aquificae 7 0 187857 23 2715 0 32069 17 1898 order 1 Aquificales 2 1 family 5 Aquificaceae 0 64898 11 1163 genus 0 939 1 139 Hydrogenobacter thermophilus species 1 139 0 940 75905 0 145 2 genus 0 136094 1 59 species Thermocrinis albus species Thermocrinis ruber 0 75906 1 86 6 842 0 168657 8 Hydrogenobaculum 1 genus no rank 5 834 0 2622382 Hydrogenobaculum sp. HO species 1 151 0 547144 Hydrogenobaculum sp. SN species 151 1 547146 0 species Hydrogenobaculum sp. Y04AAS1 0 380749 1 230 Hydrogenobaculum sp. 3684 species 1 151 0 547143 151 1 547145 0 Hydrogenobaculum sp. SHO species genus 0 2713 1 32 32 1 63363 0 Aquifex aeolicus species Hydrogenothermaceae 1 1 family 4 662 0 224027 0 182899 1 151 genus species Persephonella marina 309805 0 151 1 genus 0 212790 2 510 species Sulfurihydrogenibium azorense 309806 0 225 1 no rank 1 285 0 2619248 436114 0 285 1 species Sulfurihydrogenibium sp. YO3AOP1 1 71 0 90150 no rank genus 71 1 412592 0 Thermosulfidibacter takaii species 71 1 412593 0 5 810 0 1485951 2 Desulfurobacteriales order 1 family 1 Desulfurobacteriaceae 1 0 558314 4 808 171868 0 203 2 1 genus 3 Thermovibrio 228745 0 200 1 species Thermovibrio ammonificans genus 1 604 0 64159 604 1 64160 0 Desulfurobacterium thermolithotrophum species