members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 31 40875 4666 32043460 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 superkingdom 2157 50303 0 257 1783276 40 clade 1 0 0 1 phylum 1801631 40 2490204 40 genus 0 1 1920749 40 species Candidatus Micrarchaeota archaeon Mia14 0 1 4453 1783275 clade 0 44 phylum 51967 17 0 1 17 498845 genus 0 1 Candidatus Korarchaeum cryptofilum 1 0 species 17 498846 0 35 phylum 28889 3243 class 3243 183924 0 35 871006 232 order 1 3 0 Acidilobales 1 family 871007 78 0 1 0 1 genus 78 105850 0 1 Acidilobus saccharovorans species 78 242703 0 1 family 153 255472 153 200414 genus 0 1 200415 153 species 0 1 Caldisphaera lagunensis 1 1 0 12 Desulfurococcales order 654 114380 family 2272 456 0 8 54253 34 genus 0 1 0 1 Thermosphaera aggregans 54254 34 species 105 54258 genus 0 2 0 1 Ignicoccus hospitalis species 160233 87 species 18 54259 0 1 Ignicoccus islandicus 2 0 genus 2279 159 Staphylothermus marinus 0 1 species 2280 50 Staphylothermus hellenicus 0 1 species 109 84599 2 0 genus 105 2273 0 1 Desulfurococcus amylolyticus 94694 42 species species 2275 63 0 1 Desulfurococcus mucosus genus 477695 53 0 1 species 1200300 53 0 1 Thermogladius calderae family 2307 197 0 3 2308 80 genus 0 1 1 0 Pyrodictium delaneyi species 1273541 80 0 1 genus 45 54251 species 54252 45 Pyrolobus fumarii 1 0 genus 72 54247 0 1 72 54248 species 0 1 Hyperthermus butylicus 2266 948 order 2 0 12 Thermoproteales 1 0 7 21 Thermoproteaceae 1 2267 492 family 1 0 76886 13 genus 0 1 Caldivirga maquilingensis species 76887 13 0 1 2276 89 genus 89 2277 species Pyrobaculum islandicum 1 0 0 2 genus 133 164450 species 55 164451 Vulcanisaeta distributa 0 1 985052 78 species 0 1 Vulcanisaeta moutnovskia 0 2 236 2270 genus 0 1 Thermoproteus uzoniensis species 184117 101 species 2271 135 Thermoproteus tenax 1 0 454 114378 family 0 4 454 2268 genus 0 4 0 1 Thermofilum adornatus species 131 1365176 0 1 Thermofilum uzonense species 1550241 116 species 2269 106 0 1 Thermofilum pendens 0 1 Thermofilum carboxyditrophus 1483572 101 species 0 8 order 2281 1409 0 8 family 1409 118883 215 12914 genus 0 1 species 215 563177 Acidianus hospitalis 0 1 genus 41980 120 0 2 species 43687 35 Metallosphaera sedula 0 1 1006005 85 species 1 0 Metallosphaera cuprina 0 3 genus 2284 590 no rank 2641160 198 0 1 Sulfolobus sp. A20 0 1 species 198 1891280 0 1 Sulfolobus islandicus species 280 43080 species 112 2285 Sulfolobus acidocaldarius 1 0 0 1 genus 170 2100760 Sulfolobus solfataricus 0 1 species 170 2287 0 1 genus 314 69655 Sulfolobus tokodaii 0 1 314 111955 species 0 8 phylum 1193 651137 0 3 order 31932 568 0 3 family 338190 568 genus 338191 316 0 2 species 210 1229909 Candidatus Nitrosopumilus sediminis 1 0 0 1 Candidatus Nitrosopumilus adriaticus species 1580092 106 0 1 genus 252 1993653 1898749 252 species Candidatus Nitrosomarinus catalina 1 0 0 3 no rank 321 651142 0 1 1593364 141 genus species 1410606 141 Candidatus Nitrosopelagicus brevis 0 1 genus 180 1825023 0 2 Candidatus Nitrosotenuis sp. AQ6f 1 0 60 1846278 species 1 0 Candidatus Nitrosotenuis cloacae species 120 1603555 class 1643678 304 0 2 order 1968909 58 0 1 0 1 1968910 58 family 58 498374 genus 1 0 Candidatus Nitrosocaldus islandicus 1 0 58 2045011 species order 246 1033996 1 0 0 1 246 1033997 family 0 1 genus 246 497726 species 1034015 246 Nitrososphaera viennensis 1 0 phylum 28890 45810 1 2 0 212 Euryarchaeota class 4945 183968 1 5 40 0 Thermococci Thermococcales 2 0 39 1 4940 2258 order family 4938 2259 1 Thermococcaceae 4 38 0 0 1 129 83867 genus 129 971279 species Palaeococcus pacificus 1 0 1 29 0 59 Thermococcus genus 2263 3868 1 0 Thermococcus paralvinellae species 129 582419 species 105 2265 Thermococcus litoralis 1 0 species 88 195522 Thermococcus nautili 0 1 110 311400 species 0 1 Thermococcus kodakarensis species 180 187880 1 0 Thermococcus radiotolerans 110164 87 species Thermococcus guaymasensis 0 1 1 0 Thermococcus gorgonarius species 71997 144 species 169 277988 Thermococcus thioreducens 1 0 species 105 342948 0 1 Thermococcus onnurineus 0 1 Thermococcus chitonophagus species 54262 36 1 0 Thermococcus celer species 2264 288 species 107 1505907 0 1 Thermococcus eurythermalis species 72803 172 0 1 Thermococcus siculi 0 1 Thermococcus piezophilus species 1712654 97 55802 271 species Thermococcus barophilus 1 0 species 120 54077 Thermococcus barossii 0 1 Thermococcus profundus 0 1 49899 136 species no rank 2627626 943 6 0 126 2016361 species Thermococcus sp. EXT12c 0 1 species 61 1674923 0 1 Thermococcus sp. 2319x1 111 2008440 species 0 1 Thermococcus sp. 5-4 Thermococcus sp. 4557 1 0 species 125 1042877 species 122420 93 Thermococcus sp. P6 1 0 246969 427 species Thermococcus sp. AM4 1 0 0 1 Thermococcus cleftensis 163003 94 species Thermococcus sibiricus 0 1 species 133 172049 Thermococcus pacificus 1 0 71998 47 species Thermococcus peptonophilus 0 1 species 123 53952 125 187878 species 1 0 Thermococcus gammatolerans 0 7 genus 937 2260 Pyrococcus kukulkanii 1 0 species 61 1609559 0 1 Pyrococcus yayanosii species 1008460 107 0 1 Pyrococcus horikoshii 53953 430 species species 2261 202 Pyrococcus furiosus 0 1 species 29292 28 Pyrococcus abyssi 1 0 2629106 109 no rank 2 0 species 57 342949 Pyrococcus sp. NA2 0 1 species 52 1183377 Pyrococcus sp. ST04 1 0 0 106 2290931 27482 clade 1 Methanomicrobia 0 44 11 class 13102 224756 order 3381 2191 1 Methanomicrobiales 10 0 14 1596 2194 family 3 6 0 Methanomicrobiaceae 1 0 1 genus 230355 265 54120 265 species Methanolacinia petrolearia 1 0 2 4 0 Methanoculleus 1 1328 45989 genus species 83986 497 Methanoculleus bourgensis 1 0 Methanoculleus marisnigri 1 0 2198 470 species no rank 359 2619537 1 0 Methanoculleus sp. MAB1 0 1 359 86622 species family 196137 385 1 0 0 1 2202 385 genus species 385 2203 Methanospirillum hungatei 0 1 family 1101 1198451 1 2 5 0 Methanoregulaceae 1 0 2 5 Methanosphaerula genus 475087 171 species 475088 166 Methanosphaerula palustris 0 1 395331 928 genus 0 2 675 882104 species 0 1 Methanoregula formicica Methanoregula boonei 1 0 253 358766 species family 88404 289 1 0 2192 289 genus 0 1 Methanocorpusculum labreanum 1 0 species 289 83984 order 94695 9145 1 Methanosarcinales 26 0 5 1 0 22 Methanosarcinaceae 1 2206 8376 family genus 364 2220 0 1 420950 364 species 0 1 Methanolobus psychrophilus 6020 2207 genus 14 13 0 Methanosarcina 1 Methanosarcina mazei 0 1 2209 801 species Methanosarcina thermophila 1 0 species 2210 307 0 4 1442 2644672 no rank species 296 1434102 0 1 Methanosarcina sp. WH1 Methanosarcina sp. MTP4 0 1 285 1434100 species 1 0 Methanosarcina sp. Kolksee 597 1434099 species Methanosarcina sp. WWM596 0 1 1434103 264 species Methanosarcina vacuolata 1 0 547 2215 species 0 1 Methanosarcina horonobensis 418008 402 species species 547 38027 Methanosarcina siciliae 1 0 species 2214 345 1 0 Methanosarcina acetivorans 0 1 Methanosarcina lacustris species 365 170861 1250 2208 species Methanosarcina barkeri 0 1 296 101191 genus 0 1 species 296 101192 1 0 Methanomethylovorans hollandica 0 2 2175 370 genus 0 1 Methanohalophilus halophilus 2177 201 species Methanohalophilus mahii 1 0 species 2176 169 genus 2321 324 0 1 Methanohalobium evestigatum 0 1 324 2322 species 0 1 196136 399 genus species 39669 399 0 1 Methanosalsum zhilinae 2 0 602 2225 genus 1 0 Methanococcoides methylutens species 239 2226 0 1 Methanococcoides burtonii 363 29291 species family 143067 764 1 4 0 3 Methanosaetaceae 2222 760 genus 0 2 species 301375 371 1 0 Methanosaeta harundinacea 0 1 Methanothrix soehngenii 389 2223 species 1 Methanocellales 4 3 0 order 570264 565 0 2 570265 561 family 561 570266 genus 0 2 456 1175445 species Methanocella arvoryzae 1 0 species 1175444 105 Methanocella conradii 0 1 14380 183963 class Halobacteria 62 0 61 1 Natrialbales 0 17 69 1 1644060 4808 order family 1644061 4739 1 40 16 0 Natrialbaceae 1 0 genus 63742 350 Natrialba magadii 0 1 350 13769 species 525 353799 genus 0 1 species 353800 525 Halostagnicola larsenii 1 0 1 Natronococcus 0 2 1 genus 469 29287 Natronococcus occultus 0 1 29288 468 species 1269201 480 genus 0 1 no rank 480 2621923 1 0 Salinarchaeum sp. Harcht-Bsk1 1 0 species 480 1333523 Haloterrigena 3 0 11 1 121871 999 genus 0 1 Haloterrigena turkmenica species 483 62320 species 505 588898 0 1 Haloterrigena daqingensis 387342 613 genus 0 1 387343 613 species Halopiger xanaduensis 1 0 0 2 6 Halobiforma 1 562 203193 genus 0 1 Halobiforma lacisalsi species 229731 556 0 1 genus 116 2256 116 44930 species Natronobacterium gregoryi 0 1 3 0 16 Natrinema 1 88723 585 genus 0 1 2622230 283 no rank species 283 406552 Natrinema sp. J7-2 1 0 species 69525 286 0 1 Natrinema pellirubrum order 1644055 3615 1 Haloferacales 17 0 44 0 1 no rank 2678336 314 halophilic archaeon DL31 1 0 314 756883 species 1644056 1867 family Haloferacaceae 7 0 1 1 2251 1509 genus 0 4 13 Haloferax 1 229 2252 species Haloferax mediterranei 0 1 1 0 Haloferax gibbonsii 747 35746 species 520 2246 species 1 0 Haloferax volcanii 0 1 60846 211 genus species 60847 211 Halogeometricum borinquense 1 0 genus 146 293431 0 1 Haloquadratum walsbyi 1 0 146 293091 species family 1963271 1390 1 Halorubraceae 0 8 7 1644057 429 genus 3 0 2 Salinigranum 1 755307 426 species Salinigranum rubrum 0 1 0 2 2 Halopenitus 1 1209988 181 genus 1 0 Halopenitus persicus species 179 1048396 11 3 0 Halorubrum 1 56688 773 genus species 29284 374 1 0 Halorubrum trapanicum Halorubrum lacusprofundi 1 0 species 2247 388 order 2235 5896 1 27 0 80 Halobacteriales family 2236 2193 1 Halobacteriaceae 0 10 7 Halanaeroarchaeum 2 0 3 1 129 1656823 genus 1 0 Halanaeroarchaeum sulfurireducens species 126 1604004 0 1 1980514 443 genus Halodesulfurarchaeum formicicum 1 0 species 443 1873524 Halalkalicoccus 7 2 0 1 463 332246 genus Halalkalicoccus jeotgali 1 0 413810 456 species 7 0 4 Halobacterium 1 2239 1151 genus 1 0 Halobacterium salinarum species 322 2242 0 1 no rank 468 2668073 0 1 Halobacterium sp. DL1 751944 468 species species 1407499 354 0 1 Halobacterium hubeiense 16 0 37 Haloarculaceae 1 3623 1963268 family genus 63743 389 1 Natronomonas 0 3 1 species 166 416273 1 0 Natronomonas moolapensis species 222 2257 Natronomonas pharaonis 1 0 1 Haloarcula 0 5 90 genus 2237 1389 0 1 Haloarcula hispanica 339 51589 species 0 1 no rank 305 2624677 species 305 1592728 1 0 Haloarcula sp. CBA1115 Haloarcula taiwanensis 1 0 232 1932004 species 1 0 Haloarcula marismortui species 423 2238 429 1073987 genus Halorientalis 7 0 2 1 no rank 2648975 422 0 1 Halorientalis sp. IM1011 1 0 species 422 1932360 146825 840 genus Halorhabdus 3 0 5 1 Halorhabdus tiamatea 0 1 species 430914 302 species 146826 533 0 1 Halorhabdus utahensis 1 Halomicrobium 17 0 2 genus 539 203135 species 57705 522 Halomicrobium mukohataei 1 0 39 0 clade 2283794 8477 183925 5027 class 24 0 5 Methanobacteria 1 0 23 5022 2158 order 2159 4807 family 4 0 22 Methanobacteriaceae 1 1 3 7 0 Methanobrevibacter genus 2172 2620 Methanobrevibacter smithii 0 1 species 2173 551 1 0 Methanobrevibacter olleyae 294671 355 species 1 0 Methanobrevibacter millerae 541 230361 species 728 2638681 no rank 0 2 1 0 Methanobrevibacter sp. AbM4 224719 283 species 445 1609968 species 1 0 Methanobrevibacter sp. YE315 Methanobrevibacter ruminantium 0 1 83816 442 species 1 0 genus 441 2316 2317 441 species 0 1 Methanosphaera stadtmanae Methanobacterium 0 8 1 1 2160 1451 genus 0 2 2627676 222 no rank 1 0 Methanobacterium sp. MB1 species 121 1379702 1911685 101 species Methanobacterium sp. MZ-A1 0 1 Methanobacterium subterraneum 0 1 59277 92 species 1 0 Methanobacterium paludis species 868131 183 species 240 877455 1 0 Methanobacterium lacus Methanobacterium formicicum 1 0 species 2162 455 0 1 Methanobacterium congolense species 118062 258 1 5 0 2 Methanothermobacter genus 291 145260 no rank 2631116 53 0 1 0 1 Methanothermobacter sp. CaT2 species 866790 53 57 145261 species 1 0 Methanothermobacter wolfeii 1 0 Methanothermobacter thermautotrophicus species 145262 43 0 1 Methanothermobacter marburgensis 145263 136 species 0 1 2178 215 family 1 0 genus 215 2179 Methanothermus fervidus 1 0 species 215 2180 class 3450 183939 0 15 3450 2182 order 0 15 Methanococcaceae 1 6 0 1 1968 2183 family genus 2184 1729 0 4 species 190 2187 1 0 Methanococcus vannielii species 164 2188 0 1 Methanococcus voltae species 283 42879 0 1 Methanococcus aeolicus 0 1 Methanococcus maripaludis species 1092 39152 genus 155862 238 1 0 Methanothermococcus okinawensis 1 0 238 155863 species 0 9 1482 196117 family 1 Methanotorris 3 0 2 genus 337 196119 Methanotorris igneus 1 0 2189 334 species genus 1145 196118 1 2 0 7 Methanocaldococcus 67760 66 species 0 1 Methanocaldococcus infernus 0 1 Methanocaldococcus vulcanius 163 73913 species Methanocaldococcus fervens 1 0 species 83171 131 1 0 no rank 210 2641196 210 644281 species 1 0 Methanocaldococcus sp. FS406-22 Methanocaldococcus jannaschii 1 0 218 2190 species Methanocaldococcus bathoardescens 0 1 species 355 1301915 19 0 2283796 3922 clade clade 1803510 175 2 0 175 379546 genus 0 2 0 1 41 2633939 no rank 1 0 Aciduliprofundum sp. MAR08-339 species 41 673860 Aciduliprofundum boonei 1 0 379547 134 species Thermoplasmata 11 0 17 1 183967 3747 class 500 1234666 no rank 0 1 1 0 methanogenic archaeon ISO4-H5 species 500 1495144 Methanomassiliicoccales 1 0 6 1 1235850 1206 order 1577788 662 family 7 0 3 Methanomassiliicoccaceae 1 0 1 1080709 356 genus species 1406512 356 Candidatus Methanomassiliicoccus intestinalis 0 1 1 0 1607807 299 genus 1577791 299 species 1 0 Candidatus Methanoplasma termitum 0 2 family 2517203 543 1 Candidatus Methanomethylophilus 28 0 2 genus 1291539 543 species 515 1291540 1 0 Candidatus Methanomethylophilus alvus order 2030 2301 0 9 1 1 0 2 Cuniculiplasmataceae family 1747776 361 genus 1747777 360 1 0 0 1 Cuniculiplasma divulgatum 1673428 360 species no rank 1919231 703 1 0 1 0 Thermoplasmatales archaeon BRNA1 species 1054217 703 0 1 family 306 46630 genus 46631 306 0 1 species 306 82076 1 0 Picrophilus torridus 0 2 family 90142 477 74968 477 genus 0 2 197 74969 species 0 1 Ferroplasma acidiphilum 97393 280 species Ferroplasma acidarmanus 0 1 46659 183 family 0 3 2302 183 genus 3 0 1 Thermoplasma 1 Thermoplasma volcanium 0 1 50339 105 species species 77 2303 Thermoplasma acidophilum 0 1 0 7 982 183980 class 0 7 order 2231 982 2232 982 family 0 7 614 2233 genus 0 4 180 84156 species 1 0 Archaeoglobus profundus 0 1 Archaeoglobus veneficus 202 58290 species 1 0 Archaeoglobus sulfaticallidus 115 1316941 species 117 2234 species Archaeoglobus fulgidus 1 0 0 2 genus 190818 277 species 132 113653 Geoglobus ahangari 0 1 565033 145 species Geoglobus acetivorans 1 0 1 0 genus 54260 91 Ferroglobus placidus 0 1 species 54261 91 1 75 0 4377 Bacteria superkingdom 2 31952282 1 0 9 13 Elusimicrobia phylum 1821 74152 0 2 class 641853 217 217 641854 order Elusimicrobiales 0 2 1 1 family 641876 216 0 1 genus 216 423604 1 0 423605 216 species Elusimicrobium minutum 0 1 Endomicrobia 0 5 2 1 1196 447830 class order 1783344 1194 0 4 family 1194 1783343 1 1 0 4 Endomicrobiaceae genus 1193 1408194 1 1 0 3 Endomicrobium 0 1 Candidatus Endomicrobium trichonymphae 1408204 403 species species 1408281 789 Endomicrobium proavitum 1 0 no rank 395 99260 0 1 uncultured Termite group 1 bacterium 1 0 167965 395 species clade 1783257 35771 0 87 256845 3207 phylum 3 0 1313211 3207 class 3 0 10 Lentisphaeria 1 278082 3197 order 0 2 155 Victivallales 1 3042 1674876 no rank 1 0 Victivallales bacterium CCUG 44730 1 0 2094242 3042 species phylum 2090 204428 0 20 12 20 0 Chlamydiia 1 204429 2090 class 1 Parachlamydiales 0 5 1 order 1963360 717 2 0 family 92713 371 0 1 genus 83551 249 249 83552 species Parachlamydia acanthamoebae 0 1 0 1 genus 282132 122 389348 122 species Candidatus Protochlamydia naegleriophila 0 1 family 92712 137 0 1 0 1 genus 34093 137 species 137 83561 Simkania negevensis 1 0 92714 208 family 0 1 0 1 genus 208 71666 71667 208 species Waddlia chondrophila 1 0 2 0 14 Chlamydiales 1 51291 1361 order 809 1359 family Chlamydiaceae 4 0 13 1 no rank 1355 1113537 12 0 genus 810 1355 1 2 12 0 Chlamydia 83556 282 species 0 1 Chlamydia felis 1 0 Chlamydia avium species 65 1457141 species 83560 124 Chlamydia muridarum 1 0 1 0 Chlamydia pecorum 85991 90 species species 109 83554 1 0 Chlamydia psittaci 83559 193 species 0 1 Chlamydia suis 813 66 species Chlamydia trachomatis 0 1 Chlamydia gallinacea 0 1 1457153 70 species 0 1 Chlamydia caviae 83557 233 species 1 0 Chlamydia pneumoniae 68 83558 species Chlamydia abortus 1 0 83555 53 species 134625 1028 phylum 0 5 1 5 0 3 Kiritimatiellae class 1028 1921781 1921782 1025 order Kiritimatiellales 4 0 8 1 0 3 2 Kiritimatiellaceae 1 1921783 1017 family 0 2 19 Kiritimatiella 1 1921784 1015 genus species 1307763 996 Kiritimatiella glycovorans 0 1 1 Verrucomicrobia 45 25 0 phylum 74201 13720 class 393 1955630 2 0 0 2 order 393 717963 family 393 717964 0 2 genus 393 511745 0 2 species 251 591154 1 0 Methylacidiphilum fumariolicum Methylacidiphilum infernorum 0 1 species 142 511746 5157 203494 class Verrucomicrobiae 6 0 13 1 1 40 0 5 Verrucomicrobiales order 48461 5144 family 1647988 5104 1 32 4 0 Akkermansiaceae 1 Akkermansia 0 3 58 genus 5072 239934 0 1 Akkermansia glycaniphila species 1679444 1774 species 239935 3240 Akkermansia muciniphila 1 0 0 2 134549 87 class 1 Candidatus Xiphinematobacter 2 0 1 genus 134550 87 86 2648876 no rank 1 0 Candidatus Xiphinematobacter sp. Idaho Grape 1 0 species 86 1704307 2033 417295 no rank 2 0 0 1 Verrucomicrobia bacterium IMCC26134 species 927 1637999 species 1106 2026799 1 0 Verrucomicrobia bacterium 1 46 0 12 Opitutae class 6005 414999 415001 676 order Puniceicoccales 4 0 6 1 670 415002 family 2 0 3 Puniceicoccaceae 1 Coraliomargarita 0 2 7 1 442430 668 genus Coraliomargarita akajimensis 1 0 661 395922 species Opitutales 7 0 142 1 415000 5283 order family 5141 134623 1 39 6 0 Opitutaceae 0 1 no rank 2342 278955 0 1 Opitutaceae bacterium TAV5 794903 2342 species 1961799 1541 genus 20 2 0 Lacunisphaera 1 1 0 Lacunisphaera limnophila species 1521 1838286 1219 178440 genus Opitutus 2 0 10 1 species 1209 107709 1 0 Opitutus terrae 15726 203682 phylum 0 34 class 203683 12269 1 Planctomycetia 29 0 24 1 Planctomycetales 11 0 302 order 112 7176 1 10 0 28 Planctomycetaceae family 6874 126 1649480 562 genus 1 0 2 Planctopirus 1 species 120 561 1 0 Planctopirus limnophila 1 Fuerstia 0 2 37 genus 1936111 1043 Fuerstia marisgermanicae 0 1 species 1006 1891926 genus 1649490 555 1 19 2 0 Rubinisphaera 536 119 species Rubinisphaera brasiliensis 1 0 genus 118 4686 1 40 3 0 Planctomyces 2 0 2648843 4646 no rank species 939 1632864 0 1 Planctomyces sp. SH-PL14 species 3707 1636152 Planctomyces sp. SH-PL62 1 0 order 1474 2691354 0 4 0 1 350 2691358 family genus 1676125 350 1 0 350 1331910 species Thermogutta terrifontis 0 1 1124 2691357 family 0 3 0 2 1 Pirellula 1 341 123 genus 340 125 species 1 0 Pirellula staleyi 0 1 783 265488 genus Rhodopirellula baltica 0 1 265606 783 species order 2691355 658 2 0 1 1 2 0 Gemmataceae family 658 1914233 657 113 genus 0 1 0 1 2622970 657 no rank species 657 1630693 0 1 Gemmata sp. SH-PL17 0 6 2691356 2932 order Isosphaeraceae 6 0 26 1 2932 1763524 family 1 Singulisphaera 0 2 3 genus 669 466152 Singulisphaera acidiphila 0 1 666 466153 species 127 742 genus 1 0 Isosphaera pallida 1 0 species 128 742 1 Paludisphaera 10 0 2 genus 1495 1763521 Paludisphaera borealis 1 0 species 1387353 1485 class 2672 666505 1 Phycisphaerae 0 7 15 666506 1362 order Phycisphaerales 25 4 0 1 family 666507 1337 1 3 0 3 Phycisphaeraceae 1334 666508 genus Phycisphaera 11 2 0 1 547188 1323 species Phycisphaera mikurensis 0 1 order 1295 2483366 2 0 2 0 1295 2483367 family 0 2 1295 2483368 genus 756 1941349 species 0 1 Phycisphaerae bacterium ST-PulAB-D4 0 1 Phycisphaerae bacterium L21-RPul-D3 species 539 1940790 2517206 785 class 0 3 785 1127829 order 12 0 3 Candidatus Brocadiales 1 0 2 1127830 773 family 773 380738 genus 1 0 2 Candidatus Kuenenia 1 772 174633 species 1 0 Candidatus Kuenenia stuttgartiensis 0 13 phylum 40117 4822 1 0 13 7 Nitrospira class 4822 203693 4815 189778 order 0 12 43 Nitrospirales 1 1 31 11 0 Nitrospiraceae family 189779 4772 179 1054 genus 2 4 0 Leptospirillum 1 species group 261385 418 0 1 0 1 Leptospirillum sp. Group II 'CF-1' species 1660083 418 species group 284 655606 1 0 species 284 180 Leptospirillum ferrooxidans 1 0 350 261386 species group 1 0 178606 350 species 1 0 Leptospirillum ferriphilum 1 0 genus 28261 777 777 28262 species 1 0 Thermodesulfovibrio yellowstonii 0 5 13 Nitrospira 1 2910 1234 genus Nitrospira moscoviensis 0 1 42253 1134 species 0 1 Candidatus Nitrospira inopinata 1715989 440 species 527 1325564 species Nitrospira japonica 1 0 Nitrospira defluvii 1 0 species 330214 796 57723 10165 phylum 21 0 4 Acidobacteria 1 204432 8398 class Acidobacteriia 38 0 17 1 Acidobacteriales 63 12 0 1 6991 204433 order family 6928 204434 1 Acidobacteriaceae 11 0 69 1 Candidatus Koribacter 20 0 2 genus 658061 983 963 658062 species 1 0 Candidatus Koribacter versatilis genus 2301 392733 1 Terriglobus 0 3 6 1356 392734 species 0 1 Terriglobus roseus species 870903 939 Terriglobus saanensis 0 1 Acidobacterium 0 2 65 1 1330 33973 genus Acidobacterium capsulatum 1 0 33075 1265 species 1 22 0 3 Granulicella genus 940557 2245 species 1052 940614 Granulicella mallensis 1 0 species 1171 940615 Granulicella tundricola 1 0 1 Solibacterales 4 0 24 order 1369 332160 Solibacteraceae 30 0 3 1 332161 1345 family genus 332162 1315 1 0 2 4 Candidatus Solibacter species 332163 1311 Candidatus Solibacter usitatus 1 0 1562566 1763 class Blastocatellia 3 0 1 1 1762 458032 genus 2 0 13 Chloracidobacterium 1 1749 458033 species Chloracidobacterium thermophilum 0 1 phylum 11862 200918 0 36 11862 188708 class Thermotogae 0 36 8 1 order 1100 1643946 0 3 family 1643948 1100 0 3 755 651456 genus 0 2 species 651457 300 1 0 Kosmotoga olearia species 1330330 455 0 1 Kosmotoga pacifica genus 1184396 345 0 1 1 0 Mesotoga prima species 345 1184387 2419 7661 order 6 0 26 Thermotogales 1 1 Thermotogaceae 15 0 17 family 4360 188709 genus 2775 2335 1 Thermotoga 0 11 112 species 255 1508419 0 1 Thermotoga caldifontis 1 0 Thermotoga neapolitana 183 2337 species 1 0 Thermotoga profunda 1508420 435 species 2336 274 species Thermotoga maritima 1 0 Thermotoga petrophila 1 0 species 294 93929 2631113 978 no rank 0 4 species 263 1157948 Thermotoga sp. 2812B 1 0 Thermotoga sp. Cell2 0 1 species 291 1157947 0 1 Thermotoga sp. RQ7 126738 188 species 0 1 Thermotoga sp. RQ2 species 236 126740 Thermotoga naphthophila 0 1 244 93930 species genus 1570 1643951 1 Pseudothermotoga 97 0 5 0 1 Pseudothermotoga hypogea species 57487 328 Pseudothermotoga lettingae 0 1 species 177758 314 species 535 119394 0 1 Pseudothermotoga thermarum species 38322 296 1 0 Pseudothermotoga elfii 3295 1643950 family Fervidobacteriaceae 4 0 8 1 3 0 genus 2422 1299 0 1 Fervidobacterium nodosum 2424 286 species 0 1 Fervidobacterium islandicum species 317 2423 Fervidobacterium pennivorans 1 0 93466 696 species 0 4 genus 1992 2420 Thermosipho melanesiensis 0 1 species 46541 554 Thermosipho africanus 0 1 species 2421 393 no rank 2676525 1045 2 0 514 1462747 species Thermosipho sp. 1063 1 0 1437364 531 species 0 1 Thermosipho sp. 1070 3093 1643947 order 6 6 0 Petrotogales 1 0 5 3087 1643949 family 28236 581 genus 0 1 1 0 Petrotoga mobilis species 581 69499 1511648 624 genus 1 0 species 624 1006576 1 0 Defluviitoga tunisiensis genus 1882 160798 1 Marinitoga 0 3 6 0 1 no rank 951 2640159 0 1 Marinitoga sp. 1137 species 951 1545835 Marinitoga piezophila 1 0 species 925 149715 1701 0 clade 11946455 1783272 0 2 1859062 467 no rank 78 0 2 Thermobaculum 1 262406 467 genus species 166501 389 0 1 Thermobaculum terrenum 0 142 1798711 57313 clade 1117 57313 phylum Cyanobacteria 29 0 142 1 order 25965 1890424 1 Synechococcales 55 0 197 17361 1890426 family Synechococcaceae 0 33 68 1 genus 427 13034 1 Dactylococcopsis 0 2 1 1 0 Dactylococcopsis salina species 292566 426 0 1 192 146785 genus Thermosynechococcus elongatus 0 1 species 146786 192 12275 1129 genus Synechococcus 0 26 152 1 32046 371 species 0 1 Synechococcus elongatus no rank 11397 2626047 0 23 Synechococcus sp. PCC 7117 0 1 species 195498 218 Synechococcus sp. SynAce01 0 1 species 496 1916956 Synechococcus sp. PCC 6312 0 1 253 195253 species 1280380 474 species 0 1 Synechococcus sp. KORDI-100 0 1 Synechococcus sp. PCC 8807 species 388 195248 species 345 374982 1 0 Synechococcus sp. PCC 73109 0 1 Synechococcus sp. WH 7803 563 32051 species species 84588 567 Synechococcus sp. WH 8102 0 1 166314 600 species Synechococcus sp. WH 8109 0 1 Synechococcus sp. KORDI-52 0 1 species 585425 663 species 316278 868 0 1 Synechococcus sp. RCC307 540 29410 species Synechococcus sp. WH 8103 1 0 species 374981 366 1 0 Synechococcus sp. PCC 7003 species 169 316279 Synechococcus sp. CC9902 1 0 Synechococcus sp. PCC 7502 0 1 1173263 246 species 32049 251 species 0 1 Synechococcus sp. PCC 7002 0 1 Synechococcus sp. NIES-970 species 1827144 454 species 795 585423 0 1 Synechococcus sp. KORDI-49 64471 172 species Synechococcus sp. CC9311 1 0 Synechococcus sp. JA-2-3B'a(2-13) 0 1 781 321332 species species 412 1350461 Synechococcus sp. UTEX 2973 1 0 species 1283 321327 0 1 Synechococcus sp. JA-3-3Ab 110662 493 species Synechococcus sp. CC9605 0 1 Synechococcus lividus 1 0 species 355 33070 167375 4399 genus 3 0 117 Cyanobium 1 0 1 Cyanobium gracile 59930 2084 species 2198 2627006 no rank 1 0 1851505 2198 species Cyanobium sp. NIES-981 0 1 618 1890429 family 0 2 618 155977 genus 5 0 2 Acaryochloris 1 Acaryochloris marina 1 0 species 613 155978 1890436 308 family 2 0 3 Pseudanabaenaceae 1 1152 306 genus Pseudanabaena 2 0 5 1 no rank 2593292 301 1 0 Pseudanabaena sp. PCC 7367 0 1 species 301 82654 2976 1213 family 0 4 9 Prochloraceae 1 genus 1218 2967 0 3 0 2 2627481 793 no rank Prochlorococcus sp. MIT 0604 0 1 1501268 318 species 0 1 Prochlorococcus sp. MIT 0801 475 1501269 species 0 1 Prochlorococcus marinus species 2174 1219 2 0 family 551 2303730 genus 551 170610 1 2 0 13 Halomicronema 538 1209493 species 1 0 Halomicronema hongdechloris Leptolyngbyaceae 29 0 6 1 2783 1890438 family 47251 2754 genus 2 5 0 Leptolyngbya 1 0 3 no rank 2047 2650499 Leptolyngbya sp. O-77 1 0 1030 1080068 species 1752064 501 species Leptolyngbya sp. NIES-3755 0 1 0 1 Leptolyngbya sp. PCC 7376 516 111781 species 705 1184 species 1 0 Leptolyngbya boryana 0 4 1890428 1171 family Synechocystis 0 4 21 1 1171 1142 genus no rank 2640012 1150 0 3 species 1148 328 Synechocystis sp. PCC 6803 0 1 species 494 1147 0 1 Synechocystis sp. PCC 6714 2116702 328 species Synechocystis sp. IPPAS B-1465 0 1 0 38 subclass 1301283 12757 1118 7126 order 2 22 0 Chroococcales 1 Cyanobacteriaceae 0 2 4 1 950 1890452 family genus 946 102234 0 1 1 0 Cyanobacterium aponinum 379064 946 species Chroococcaceae 0 6 3 1 2014 1890464 family 1 0 509 268175 genus 1 0 no rank 2648896 509 species 509 2005460 1 0 Chondrocystis sp. NIES-4102 669357 1036 genus Geminocystis 6 0 3 1 no rank 1030 2625037 0 2 Geminocystis sp. NIES-3708 0 1 1615909 578 species 452 1617448 species Geminocystis sp. NIES-3709 1 0 102231 466 genus 0 1 no rank 2623012 466 0 1 Gloeocapsa sp. PCC 7428 1 0 species 1173026 466 family 1890450 3021 1 Aphanothecaceae 9 0 1 2 0 genus 670 2546365 species 670 2546366 2 0 strain 395962 320 Cyanothece sp. PCC 8802 0 1 41431 350 strain 0 1 Cyanothece sp. PCC 8801 274 1453359 genus 0 1 species 274 713887 Candidatus Atelocyanobacterium thalassa 1 0 0 2 no rank 92682 392 392 76023 genus 2 0 2 Halothece 1 0 1 2632878 390 no rank 65093 390 species Halothece sp. PCC 7418 0 1 0 2 28070 1347 genus 2546356 749 species 0 1 strain 65393 749 1 0 Cyanothece sp. PCC 7424 2546359 598 species 0 1 Cyanothece sp. PCC 7822 1 0 497965 598 strain 0 1 263510 337 genus 0 1 337 2546360 species 43989 337 strain Cyanothece sp. ATCC 51142 0 1 1890449 1139 family 6 0 4 Microcystaceae 1 1 Microcystis 3 0 3 genus 1125 1133 370 2643300 no rank 0 1 Microcystis sp. MC19 1 0 1967666 370 species 760 1126 species 1 0 Microcystis aeruginosa 5631 1150 order Oscillatoriales 16 0 27 1 family 584 1892255 1 Gomontiellaceae 100 0 3 1 Crinalium 1 2 0 genus 241421 484 species 241425 483 1 0 Crinalium epipsammum Coleofasciculaceae 2 0 2 1 1892251 954 family 1 0 63132 952 genus 2648775 952 no rank 0 1 1173025 952 species 0 1 Geitlerinema sp. PCC 7407 family 1892254 2277 0 4 genus 771 1155738 0 1 Moorea producens 1 0 771 1155739 species Oscillatoria 3 0 8 1 1506 1158 genus 697 482564 species Oscillatoria nigro-viridis 0 1 118323 801 species Oscillatoria acuminata 1 0 0 3 1892252 1232 family 0 1 genus 44471 443 2642155 443 no rank 0 1 0 1 Microcoleus sp. PCC 7113 species 1173027 443 genus 789 1205 1 2 2 0 Trichodesmium 1206 787 species 1 0 Trichodesmium erythraeum 557 1892249 family Cyanothecaceae 8 3 0 1 genus 43988 549 1 Cyanothece 0 2 10 0 1 no rank 539 2649277 Cyanothece sp. PCC 7425 1 0 species 539 395961 order 13325 1161 1 33 0 10 Nostocales 1 0 no rank 570 1219117 Nostocales cyanobacterium HT-58-2 1 0 species 570 1940762 0 8 4065 2661849 family 1 21 0 8 Calothrix genus 4065 1186 0 6 no rank 2619626 3435 species 99598 302 Calothrix sp. PCC 7507 0 1 0 1 Calothrix sp. NIES-4071 species 764 2005469 1 0 Calothrix sp. NIES-2098 769 1954171 species 343 2005462 species Calothrix sp. NIES-3974 1 0 species 531 2005461 Calothrix sp. NIES-4101 1 0 Calothrix sp. 336/3 1 0 726 1337936 species 1 0 Calothrix parietina 32054 609 species 1185 594 family 0 3 17 Rivulariaceae 1 7 0 2 Rivularia 1 373984 577 genus no rank 2676603 570 0 1 0 1 Rivularia sp. PCC 7116 373994 570 species family 7551 1162 1 9 18 0 Nostocaceae 1 1 0 3 Trichormus genus 950 264688 1 0 Trichormus variabilis 373 264691 species Trichormus azollae 1 0 576 1164 species 1177 4817 genus 21 10 0 Nostoc 1 no rank 3243 2593658 0 7 Nostoc sp. PCC 7524 0 1 species 540 28072 species 1869241 483 1 0 Nostoc sp. CENA543 Nostoc sp. PCC 7107 0 1 species 339 317936 species 420 1751286 0 1 Nostoc sp. NIES-3756 species 1618022 489 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 1 species 484 1261031 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 0 Nostoc sp. PCC 7120 0 1 103690 488 species 0 1 Nostoc punctiforme 633 272131 species 0 1 Nostoc flagelliforme 1306274 920 species genus 1163 1775 1 Anabaena 1 0 4 0 2 2619674 1189 no rank Anabaena sp. 90 0 1 496 46234 species Anabaena sp. WA102 1 0 1647413 693 species 585 1165 species Anabaena cylindrica 1 0 1892263 535 family 2 0 genus 535 1190 1 6 2 0 Fischerella 1 0 529 494603 no rank species 1752063 529 0 1 Fischerella sp. NIES-3754 460 1890505 order 2 0 1 0 2 1 Chroococcidiopsidaceae family 460 1890528 1 0 54298 459 genus 0 1 Chroococcidiopsis thermalis species 459 54299 52604 1639 order Pleurocapsales 0 6 2 1 0 2 511 1890500 family 1 10 2 0 Pleurocapsa genus 44474 511 501 54308 species Pleurocapsa minor 1 0 family 1890498 1126 1 Dermocarpellaceae 15 0 3 0 2 1111 102115 genus 0 1 496 2642663 no rank 496 1807358 species Stanieria sp. NIES-3757 0 1 species 102116 615 Stanieria cyanosphaera 0 1 0 1 1983111 324 no rank 1 0 cyanobacterium endosymbiont of Epithemia turgida species 324 718217 11 0 6 Gloeobacteria 1 2814 307596 class Gloeobacterales 0 5 31 1 2803 307595 order 0 4 17 Gloeobacteraceae 1 2772 1890422 family Gloeobacter 13 0 3 1 2755 33071 genus 0 1 Gloeobacter kilaueensis 1416614 1078 species 1664 33072 species 1 0 Gloeobacter violaceus 0 43 18591 200795 phylum 1 7 0 1 Anaerolineae class 5076 292625 Anaerolineales 4 6 0 1 5075 292629 order family 5071 292628 1 2 5 0 Anaerolineaceae 1 0 2019482 696 genus Brevefilum fermentans 1 0 species 1986204 696 0 1 no rank 1324991 3196 1889813 3196 species 1 0 Anaerolineaceae bacterium oral taxon 439 Anaerolinea 2 0 2 1 233189 1177 genus 167964 1175 species 1 0 Anaerolinea thermophila 1 Ardenticatenia 0 5 67 class 2875 1382928 1 Ardenticatenales 25 4 0 order 2808 1382929 2783 1382930 family Ardenticatenaceae 18 0 3 1 genus 1988031 2765 1 8 2 0 Candidatus Promineofilum species 1806508 2757 0 1 Candidatus Promineofilum breve 1 3 0 9 Dehalococcoidia class 301297 2783 1 3 0 8 Dehalogenimonas genus 670486 1302 0 1 Dehalogenimonas lykanthroporepellens 777 552810 species 517 1839801 species Dehalogenimonas formicexedens 1 0 0 5 3 Dehalococcoidales 1 1478 1202465 order 1 Dehalococcoidaceae 1 4 0 family 1475 1202464 1 Dehalococcoides 3 0 1 genus 1474 61434 0 1 no rank 308 237581 Dehalococcoides sp. UCH007 0 1 species 1522671 308 species 61435 1165 0 1 Dehalococcoides mccartyi 189775 1580 class Thermomicrobia 7 0 22 1 189776 524 order Thermomicrobiales 5 0 2 1 189777 519 family 0 1 genus 499 519 0 1 1 0 Thermomicrobium roseum 500 519 species subclass 1034 85000 0 4 85001 1034 order Sphaerobacterales 22 4 0 1 1012 255728 suborder 0 3 1 Sphaerobacteraceae 3 0 8 family 1012 85002 genus 1004 2056 1 0 2 20 Sphaerobacter species 984 2057 0 1 Sphaerobacter thermophilus Chloroflexia 0 10 4 1 32061 4765 class order 32064 4761 1 0 9 17 Chloroflexales 0 4 suborder 1508595 2565 1 Roseiflexaceae 0 4 1 family 2565 1508635 1 Roseiflexus 0 3 2 genus 2564 120961 1426 120962 species Roseiflexus castenholzii 1 0 2609473 1136 no rank 0 1 species 357808 1136 Roseiflexus sp. RS-1 0 1 2179 1508594 suborder 0 4 4 0 family 1106 2179 genus 1107 2179 1 99 0 4 Chloroflexus 808 152260 species Chloroflexus aggregans 0 1 636 2 0 Chloroflexus aurantiacus 1 1272 1108 species 0 1 Chloroflexus sp. Y-400-fl 636 480224 strain Caldilineae 10 0 5 1 1512 475962 class 1 Caldilineales 21 0 4 order 1502 475963 1 3 0 Caldilineaceae 1 475964 1481 family genus 233191 1480 1 7 0 2 Caldilinea species 1473 133453 0 1 Caldilinea aerophila phylum 67819 1046 0 5 1 5 0 5 Fimbriimonadia class 1046 1663419 Fimbriimonadales 4 0 3 1 1663425 1041 order Fimbriimonadaceae 8 3 0 1 1038 1663426 family 0 2 1 Fimbriimonas 1 1030 1005038 genus Fimbriimonas ginsengisoli 0 1 species 1029 1005039 0 101 2 Tenericutes 1 544448 28189 phylum 2799557 830 no rank 0 2 1912503 830 genus 2 2 0 Candidatus Izimaplasma 1 1 0 828 2624196 no rank Candidatus Izimaplasma sp. HR1 1 0 species 828 1541959 0 2 no rank 3025 713063 species 1911684 1489 Tenericutes bacterium MO-XQ 0 1 1536 1911683 species 1 0 Tenericutes bacterium MZ-XQ 1 25 0 96 Mollicutes class 24332 31969 11659 186328 order 11 0 39 Entomoplasmatales 1 8 24 0 Spiroplasmataceae 1 2131 7713 family 23 0 170 Spiroplasma 1 2132 7705 genus Spiroplasma atrichopogonis 0 1 1114980 211 species 315358 266 species Spiroplasma eriocheiris 0 1 Spiroplasma syrphidicola 1 0 species 216945 280 230 216944 species 1 0 Spiroplasma sabaudiense 0 1 Spiroplasma litorale species 445 216942 Spiroplasma turonicum 1 0 species 216946 467 216933 171 species Spiroplasma chrysopicola 1 0 1 0 Spiroplasma cantharicola species 588 362837 species 414 2139 0 1 Spiroplasma clarkii 1 0 Spiroplasma mirum species 2144 207 Spiroplasma kunkelii 0 1 47834 262 species species 2145 406 1 0 Spiroplasma taiwanense species 217 2133 0 1 Spiroplasma citri 216936 429 species 1 0 Spiroplasma diminutum 1 0 Spiroplasma helicoides 377 216938 species 1 0 Spiroplasma floricola species 334 216937 0 1 Spiroplasma monobiae 241 2136 species 0 1 Spiroplasma apis 277 2137 species 0 1 Spiroplasma culicicola species 414 216935 216934 443 species Spiroplasma corruscae 0 1 0 2 no rank 856 2637901 0 1 Spiroplasma sp. NBRC 100390 species 428 1914410 1898044 428 species 0 1 Spiroplasma sp. TU-14 3935 33925 family Entomoplasmataceae 0 14 4 1 genus 2921 46239 1 Mesoplasma 8 0 30 2149 417 species 1 0 Mesoplasma entomophilum 0 1 Mesoplasma chauliocola species 216427 309 138853 498 species Mesoplasma lactucae 0 1 Mesoplasma syrphidae 0 1 458 225999 species 395 324078 species 0 1 Mesoplasma coleopterae 1 0 Mesoplasma tabanidae 219745 241 species 2151 573 species Mesoplasma florum 1 0 20 0 5 Entomoplasma 1 1010 46238 genus Entomoplasma somnilux 0 1 species 283 215578 1 0 Entomoplasma melaleucae 81459 306 species 1 0 Entomoplasma freundtii species 74700 227 174 214888 species 0 1 Entomoplasma luminosum order 186329 4000 1 Acholeplasmatales 11 13 0 Acholeplasmataceae 27 12 0 1 3989 2146 family 2988 2147 genus Acholeplasma 49 0 5 1 38986 952 species 1 0 Acholeplasma palmae species 2148 447 0 1 Acholeplasma laidlawii 729 61635 species Acholeplasma brassicae 0 1 Acholeplasma oculi 0 1 35623 811 species genus 974 33926 1 32 6 0 Candidatus Phytoplasma 0 3 85620 428 species group Aster yellows witches'-broom phytoplasma 0 1 115 229545 species 0 1 Onion yellows phytoplasma species 166 100379 1 0 Maize bushy stunt phytoplasma species 202462 147 0 1 85632 237 species group species 237 59748 1 0 Candidatus Phytoplasma australiense species group 85630 277 0 1 species 37692 277 0 1 Candidatus Phytoplasma mali 8648 2085 order 43 0 24 Mycoplasmatales 1 Mycoplasmataceae 42 0 11 1 8624 2092 family 0 12 2629 2767358 genus 2115 207 species Mycoplasma fermentans 1 0 2094 199 species 1 0 Mycoplasma arginini species 161 2107 1 0 Mycoplasma pulmonis 0 1 Mycoplasma bovis 280 28903 species Mycoplasma canis 0 1 227 29555 species 171284 329 species Mycoplasma cynos 1 0 2109 114 species Mycoplasma synoviae 1 0 48003 176 species 1 0 Mycoplasma pullorum species 2110 294 Mycoplasma agalactiae 1 0 Mycoplasma californicum 1 0 227 2113 species 0 1 Mycoplasma bovirhinis 193 29553 species 2112 222 species 0 1 Mycoplasma bovigenitalium 1 Mycoplasma 35 27 0 genus 5560 2093 0 1 Mycoplasma putrefaciens 148 2123 species 0 1 no rank 2683645 271 1749074 271 species Mycoplasma sp. (ex Biomphalaria glabrata) 1 0 1 0 Mycoplasma arthritidis 2111 134 species species group 1429 656088 0 3 2095 371 species 1 0 Mycoplasma capricolum Mycoplasma leachii 1 0 species 2105 336 Mycoplasma mycoides 0 1 species 722 2102 Mycoplasma yeatsii 1 0 315 51365 species Mycoplasma pneumoniae 1 0 62 2104 species 0 1 Mycoplasma bovoculi 45362 135 species Mycoplasma hominis 1 0 species 411 2098 29501 82 species 0 1 Mycoplasma haemofelis Mycoplasma crocodyli 1 0 256 50052 species 0 1 Mycoplasma penetrans 321 28227 species Mycoplasma dispar 1 0 species 86 86660 0 1 Mycoplasma flocculare 57 2128 species species 82 65123 Mycoplasma wenyonii 1 0 0 1 Mycoplasma haemocanis 136241 55 species Mycoplasma gallisepticum 0 1 species 255 2096 211 57372 species 0 1 Mycoplasma suis species 2100 365 Mycoplasma hyorhinis 1 0 2118 172 species 1 0 Mycoplasma mobile 1 0 Mycoplasma hyopneumoniae species 2099 311 984991 101 species Mycoplasma parvum 1 0 species 2097 73 Mycoplasma genitalium 1 0 species 156 29554 Mycoplasma canadense 0 1 1 0 Mycoplasma ovis 37 171632 species 2 0 424 2129 genus 167 2130 species 0 1 Ureaplasma urealyticum Ureaplasma parvum 0 1 134821 257 species phylum 201174 1363536 1 0 652 80 Actinobacteria 0 5 84992 1104 class 1104 84993 order Acidimicrobiales 0 5 22 1 2 0 2448023 939 family Ilumatobacter 6 2 0 1 682522 939 genus species 467094 933 Ilumatobacter coccineus 1 0 1 0 2 6 Acidimicrobiaceae family 143 84994 1 0 genus 53634 137 species 137 53635 1 0 Acidimicrobium ferrooxidans 1843 1497346 class Thermoleophilia 3 0 5 1 1840 588673 order 51 4 0 Solirubrobacterales 1 1 Conexibacteraceae 3 0 8 family 320583 1789 Conexibacter 0 2 19 1 1781 191494 genus Conexibacter woesei 1 0 191495 1762 species 0 4 630 1752188 no rank Actinobacteria bacterium IMCC25003 1 0 184 1848255 species species 1848755 145 0 1 Actinobacteria bacterium IMCC26077 species 1848756 141 Actinobacteria bacterium IMCC26103 0 1 Actinobacteria bacterium IMCC19121 1 0 species 160 1848754 84995 2126 class Rubrobacteria 58 0 6 1 1 5 0 49 Rubrobacterales order 2068 84996 1 Rubrobacteraceae 0 4 5 family 84997 2019 32 3 0 Rubrobacter 1 42255 2014 genus species 1379 49319 1 0 Rubrobacter xylanophilus species 603 42256 0 1 Rubrobacter radiotolerans 1266461 1760 class 4534 599 0 Actinobacteria 1 256 52018 no rank 0 1 1650658 256 species Actinobacteria bacterium IMCC26256 0 1 85012 16599 order Streptosporangiales 0 16 84 1 Thermomonosporaceae 17 3 0 1 2012 2507 family Thermomonospora 2 0 116 1 2490 2019 genus species 2374 2020 0 1 Thermomonospora curvata Nocardiopsaceae 90 7 0 1 6974 83676 family genus 673 83677 1 Thermobifida 2 0 6 1 0 Thermobifida fusca species 2021 667 genus 6211 2013 1 Nocardiopsis 4 0 101 species 1573 53437 1 0 Nocardiopsis alba Nocardiopsis dassonvillei 1 0 2518 2014 species species 2019 280236 Nocardiopsis gilva 1 0 0 5 97 Streptosporangiaceae 1 2004 7034 family 83681 4270 genus 0 2 18 Nonomuraea 1 0 1 2593643 4252 no rank Nonomuraea sp. ATCC 55076 1 0 species 1909395 4252 0 2 18 Streptosporangium 1 2667 2000 genus species 2649 2001 0 1 Streptosporangium roseum order 25710 85008 1 Micromonosporales 29 0 20 485 0 19 Micromonosporaceae 1 28056 25681 family Plantactinospora 4 0 85 1 5738 673534 genus no rank 2631981 5653 3 0 species 1649 2108470 1 0 Plantactinospora sp. BC1 2071627 1728 species Plantactinospora sp. BB1 0 1 0 1 Plantactinospora sp. KBS50 2276 2024580 species Salinispora 5 3 0 1 168694 2351 genus 1093 168695 species 1 0 Salinispora tropica 0 1 Salinispora arenicola species 168697 1253 1865 11267 genus Actinoplanes 0 6 239 1 0 3 6689 2626549 no rank Actinoplanes sp. SE50/110 0 1 species 2182 134676 Actinoplanes sp. SE50 1 0 2033844 2182 species 2325 649831 species 1 0 Actinoplanes sp. N902-109 Actinoplanes friuliensis 1 0 species 196914 2146 species 2193 1866 0 1 Actinoplanes missouriensis 1 Micromonospora 0 4 233 genus 5838 1873 1 0 Verrucosispora maris species 1003110 1753 1914 2617518 no rank 0 1 0 1 Micromonospora sp. L5 species 648999 1914 47850 1938 species 1 0 Micromonospora aurantiaca 2 84593 genus Verrucosispora 1 0 24 0 12 Candidatus Nanopelagicales 1 2039638 2221 order family 2162846 2197 0 11 2039639 445 genus 8 4 0 Candidatus Nanopelagicus 1 species 134 1884634 1 0 Candidatus Nanopelagicus limnes 243 1884916 species Candidatus Nanopelagicus abundans 0 1 Candidatus Nanopelagicus hibericus 1 0 1884915 60 species genus 622681 1752 1 10 0 7 Candidatus Planktophila 1 0 Candidatus Planktophila lacus species 1884913 336 0 1 Candidatus Planktophila sulfonica 1884904 210 species Candidatus Planktophila vernalis 1 0 213 1884907 species Candidatus Planktophila versatilis 1 0 species 527 1884905 species 1884914 337 Candidatus Planktophila dulcis 0 1 1 0 Candidatus Planktophila limnetica species 119 573600 1 0 162 1063 Corynebacteriales order 138582 85007 1 11 3 0 Segniliparaceae family 316606 356 genus 286801 345 1 Segniliparus 2 0 4 species 286802 341 Segniliparus rotundus 1 0 Dietziaceae 4 0 12 1 1262 85029 family 1 Dietzia 17 3 0 genus 1250 37914 499555 563 species 1 0 Dietzia timorensis 0 1 no rank 670 2617939 670 712270 species 0 1 Dietzia sp. oral taxon 368 31392 85025 family Nocardiaceae 0 31 208 1 18674 1827 genus 23 0 875 Rhodococcus 1 0 1 Rhodococcus erythropolis 1833 836 species Rhodococcus opacus 0 1 species 2502 37919 1830 984 species Rhodococcus ruber 1 0 43767 800 species 0 1 Rhodococcus hoagii 103816 662 species 1 0 Rhodococcus pyridinivorans Rhodococcus aetherivorans 0 1 species 1093 191292 1 0 Rhodococcus jostii 945 132919 species 0 1 Rhodococcus qingshengii 553 334542 species no rank 8061 192944 12 0 Rhodococcus sp. p52 0 1 935199 517 species species 478 1045808 Rhodococcus sp. YL-1 1 0 species 622 1727214 0 1 Rhodococcus sp. H-CA8f 0 1 Rhodococcus sp. PBTS 1 species 707 1653478 Rhodococcus sp. 2G 1 0 species 1570939 662 species 1723645 432 Rhodococcus sp. 008 1 0 Rhodococcus sp. BH4 0 1 387 1807790 species 1653479 672 species 0 1 Rhodococcus sp. PBTS 2 Rhodococcus sp. WB1 1 0 species 1213 1033922 0 1 Rhodococcus sp. MTM3W5.2 species 1805827 913 1 0 Rhodococcus sp. WMMA185 497 679318 species 961 1564114 species Rhodococcus sp. B7740 1 0 species 632 1829 Rhodococcus rhodochrous 0 1 Rhodococcus fascians 1 0 species 731 1828 1 0 7 213 Nocardia genus 12510 1817 1601 37332 species Nocardia seriolae 0 1 species 37329 1551 Nocardia farcinica 0 1 Nocardia terpenica 1 0 1859 455432 species species 2863 135487 1 0 Nocardia cyriacigeorgica 37326 2990 species Nocardia brasiliensis 1 0 37330 1433 species Nocardia nova 0 1 0 2 no rank 686 697024 1 2 0 10 Lawsonella genus 686 1847725 Lawsonella clevelandensis 1 0 species 1528099 676 family 52120 1762 1 Mycobacteriaceae 56 0 284 670516 3925 genus 0 5 1520670 548 species Mycobacterium stephanolepidis 1 0 Mycobacterium chelonae 1 0 species 1774 477 0 1 Mycobacterium immunogenum species 515 83262 Mycobacterium abscessus 0 1 species 36809 1727 0 1 Mycobacterium saopaulense species 658 1578165 29725 1763 genus 2256 34 0 Mycobacterium 1 Mycobacterium haemophilum 0 1 594 29311 species 0 4 species group 2351 77643 species 1837 1773 1 Mycobacterium tuberculosis 3 0 753 Mycobacterium africanum 0 1 33894 500 biotype Mycobacterium bovis 0 1 biotype 584 1765 species 514 78331 0 1 Mycobacterium canettii 1 0 Mycobacterium dioxanotrophicus 1014 482462 species 1094 1768 species 0 1 Mycobacterium kansasii species 1769 190 Mycobacterium leprae 1 0 0 13 no rank 12161 2642494 Mycobacterium sp. JS623 0 1 species 212767 980 0 1 Mycobacterium sp. NRRL B-3805 species 1197 1570328 species 1511 1879023 1 0 Mycobacterium sp. djl-10 species 1920667 1111 Mycobacterium sp. WY10 0 1 0 1 Mycobacterium sp. MOTT36Y species 191 1168287 164757 761 species 1 0 Mycobacterium sp. JLS species 2051552 1077 0 1 Mycobacterium sp. PYR15 1 0 Mycobacterium sp. YC-RL4 species 1305 1682113 749 189918 species 1 0 Mycobacterium sp. KMS species 1273687 1020 Mycobacterium sp. VKM Ac-1817D 0 1 164756 728 species Mycobacterium sp. MCS 1 0 species 1125 1545728 Mycobacterium sp. EPa45 0 1 Mycobacterium sp. QIA-37 1 0 406 1561223 species Mycobacterium liflandii 0 1 species 261524 874 0 8 species group 6494 120793 1034 339268 species 1 0 Mycobacterium colombiense species 1844 1767 1 Mycobacterium intracellulare 4 0 440 subspecies 321 1203599 Mycobacterium yongonense 1 0 696 222805 subspecies Mycobacterium chimaera 1 0 35617 387 subspecies Mycobacterium indicus pranii 0 1 0 1 Mycobacterium paraintracellulare 1138383 419 species 1 0 Mycobacterium marseillense 701042 804 species species 1764 2393 0 1 Mycobacterium avium 0 1 925 2249310 species group species 925 722731 0 1 Mycobacterium shigaense Mycobacterium marinum 1 0 species 1781 992 Mycobacterium ulcerans 0 1 780 1809 species 15769 1866885 genus 0 13 1771 1853 species 0 1 Mycobacterium phlei Mycobacterium rhodesiae 1 0 species 36814 939 110539 1169 species Mycobacterium vanbaalenii 0 1 1795 1197 species 1 0 Mycobacterium neoaurum 1766 1373 species 0 1 Mycobacterium fortuitum 1043 1804 species 0 1 Mycobacterium gilvum species 1800 985 Mycobacterium chubuense 1 0 1772 1506 species Mycobacterium smegmatis 0 1 species 1093 1791 Mycobacterium aurum 1 0 1160 1810 species 1 0 Mycobacterium vaccae species 758802 1046 0 1 Mycobacterium litorale species 1264 134601 1 0 Mycobacterium goodii 1797 1141 species Mycobacterium thermoresistibile 0 1 2 0 1944 1073531 genus species 1037 875328 1 0 Mycobacterium sinense species 907 1788 1 0 Mycobacterium terrae 473 697025 genus 1 0 Hoyosella subflava 1 0 species 473 639313 family 85026 6162 1 Gordoniaceae 9 0 58 6104 2053 genus 8 0 64 Gordonia 1 species 84595 944 Gordonia polyisoprenivorans 1 0 no rank 2657482 1663 0 2 0 1 Gordonia sp. KTR9 species 1036 337191 1 0 Gordonia sp. YC-JH1 species 2059875 627 species 2055 1056 Gordonia terrae 1 0 species 1136941 932 Gordonia phthalatica 1 0 Gordonia bronchialis 0 1 643 2054 species 802 1004901 species Gordonia iterans 0 1 Tsukamurellaceae 0 4 9 1 85028 2706 family 1 Tsukamurella 3 0 29 genus 2060 2697 57704 1702 species Tsukamurella tyrosinosolvens 1 0 species 966 2061 Tsukamurella paurometabola 0 1 family 1653 42835 1 246 0 52 Corynebacteriaceae Corynebacterium 1073 0 51 1 42589 1716 genus 862 152794 species Corynebacterium efficiens 1 0 1 0 Corynebacterium striatum species 43770 2033 409 571915 species 1 0 Corynebacterium mustelae 1 0 Corynebacterium casei species 572 160386 1072256 678 species Corynebacterium uterequi 1 0 species 28028 663 Corynebacterium flavescens 1 0 0 2 1317 2624378 no rank species 704 1487956 Corynebacterium sp. ATCC 6931 1 0 species 613 702967 1 0 Corynebacterium sp. NML98-0116 species 89154 822 Corynebacterium terpenotabidum 1 0 species 1404244 808 0 1 Corynebacterium glyciniphilum species 521 1697 Corynebacterium ammoniagenes 0 1 575200 629 species Corynebacterium maris 0 1 Corynebacterium ureicelerivorans 0 1 species 671 401472 1 0 Corynebacterium lactis species 1231000 520 833 349751 species Corynebacterium marinum 0 1 Corynebacterium halotolerans 1 0 1457 225326 species Corynebacterium testudinoris 1 0 species 541 136857 species 1358 38289 0 1 Corynebacterium jeikeium 0 1 Corynebacterium urealyticum 43771 1084 species Corynebacterium imitans 0 1 156978 943 species 329 35757 species Corynebacterium cystitidis 1 0 Corynebacterium stationis 0 1 1705 490 species 1 0 Corynebacterium vitaeruminis 2248 38305 species 0 1 Corynebacterium glaucum species 1005 187491 1121358 877 species Corynebacterium doosanense 0 1 species 42817 580 Corynebacterium argentoratense 1 0 1721 864 species 1 0 Corynebacterium callunae 878 203263 species Corynebacterium aquilae 1 0 458 1652495 species Corynebacterium crudilactis 1 0 1223514 1296 species Corynebacterium humireducens 0 1 species 1362 108486 Corynebacterium falsenii 0 1 1436 1718 species 0 1 Corynebacterium glutamicum Corynebacterium ulcerans 1 0 65058 559 species 1030 161899 species 1 0 Corynebacterium singulare species 427 258224 0 1 Corynebacterium resistens 1286 1727 species Corynebacterium variabile 0 1 0 1 [Brevibacterium] flavum 555 92706 species 1061 191493 species Corynebacterium sphenisci 0 1 1 0 Corynebacterium atypicum 191610 685 species species 1050174 290 0 1 Corynebacterium epidermidicanis species 685 161896 Corynebacterium camporealensis 1 0 Corynebacterium pseudotuberculosis 0 1 1719 593 species Corynebacterium simulans 0 1 146827 1166 species species 1408191 519 Corynebacterium deserti 0 1 species 648 1717 0 1 Corynebacterium diphtheriae Corynebacterium frankenforstense 1 0 1340 1230998 species 161879 400 species 1 0 Corynebacterium kroppenstedtii species 519 161895 0 1 Corynebacterium phocae 1005 169292 species 0 1 Corynebacterium aurimucosum Corynebacterium kutscheri 1 0 species 35755 204 1 2 4 0 Glycomycetales order 85014 1521 85034 1519 family 39 3 0 Glycomycetaceae 1 1 Stackebrandtia 2 0 13 genus 1480 283810 1467 283811 species Stackebrandtia nassauensis 0 1 order 85009 26599 1 Propionibacteriales 34 0 114 family 85015 9451 1 Nocardioidaceae 188 0 13 783 2040 genus Aeromicrobium 10 0 2 1 species 2041 773 0 1 Aeromicrobium erythreum 182639 1937 genus Kribbella 29 2 0 1 1 0 Kribbella flavida species 1908 182640 genus 1244 116071 1 Micropruina 1 2 0 species 75385 1243 1 0 Micropruina glycogenica 3948 1839 genus 68 4 0 Nocardioides 1 1 0 Nocardioides sp. 78 species 2045452 1196 0 1 Nocardioides dokdonensis 1155 450734 species 0 1 no rank 2615069 1529 species 196162 1529 0 1 Nocardioides sp. JS614 genus 1351 2044 1 Pimelobacter 8 2 0 Pimelobacter simplex 0 1 2045 1343 species 0 20 263 Propionibacteriaceae 1 17034 31957 family 1634 1912215 genus Acidipropionibacterium 2 0 25 1 Acidipropionibacterium acidipropionici 1 0 species 1609 1748 0 1 genus 1073 2801844 species 1750 1073 Pseudopropionibacterium propionicum 1 0 1 31 5 0 Tessaracoccus genus 6089 72763 Tessaracoccus flavus 0 1 1489 1610493 species Tessaracoccus flavescens 0 1 species 1528 399497 0 1 1365 2635419 no rank Tessaracoccus sp. T2.5-30 0 1 species 1909732 1365 1676 1332264 species Tessaracoccus aquimaris 0 1 Propionibacterium 112 3 0 1 2936 1743 genus Propionibacterium freudenreichii 0 1 1744 2213 species 0 1 no rank 2608905 611 species 611 671223 Propionibacterium sp. oral taxon 193 0 1 1912216 3013 genus Cutibacterium 0 4 8 1 Cutibacterium avidum 0 1 species 33010 1371 species 1015 1747 1 0 Cutibacterium acnes 619 33011 species 1 0 Cutibacterium granulosum Propionimicrobium 2 0 1 1 203133 1187 genus no rank 1186 2633994 0 1 Propionimicrobium sp. Marseille-P3275 0 1 species 1871034 1186 29404 839 genus Microlunatus 3 0 2 1 0 1 Microlunatus phosphovorus 29405 836 species order 622452 1756 3 0 1756 83778 family Kineosporiaceae 71 0 3 1 genus 1685 33981 1 Kineococcus 4 2 0 Kineococcus radiotolerans 0 1 species 1681 131568 Micrococcales 145 0 990 1 91423 85006 order family 85019 1526 1 Brevibacteriaceae 16 3 0 1696 1510 genus Brevibacterium 0 2 5 1 Brevibacterium linens 0 1 species 1505 1703 Beutenbergiaceae 3 0 1 1 125316 647 family 0 2 13 Beutenbergia 1 646 84756 genus 633 84757 species 1 0 Beutenbergia cavernae 85017 5600 family Promicromonosporaceae 9 0 68 1 genus 157920 1887 1 Cellulosimicrobium 14 3 0 1 0 no rank 2624466 755 species 1980001 755 1 0 Cellulosimicrobium sp. TH-20 1118 1710 species Cellulosimicrobium cellulans 0 1 1 Xylanimonas 2 2 0 genus 186188 1710 0 1 Xylanimonas cellulosilytica species 186189 1708 1 3 0 23 Isoptericola genus 1935 254250 Isoptericola dokdonensis 1 0 1147 372663 species 0 1 Isoptericola variabilis 139208 765 species 85022 368 family 0 2 1 Jonesia 2 0 5 genus 43673 368 species 43674 363 1 0 Jonesia denitrificans family 3597 85016 1 29 0 6 Cellulomonadaceae 3568 1707 genus Cellulomonas 59 5 0 1 1232 1711 species Cellulomonas flavigena 0 1 0 1 Cellulomonas gilvus species 11 818 1 0 no rank 635 2620175 species 635 2003551 Cellulomonas sp. PSBB021 0 1 Cellulomonas fimi 0 1 824 1708 species family 145360 1025 1 Sanguibacteraceae 0 3 9 Sanguibacter 0 2 14 1 1016 60919 genus species 1002 60920 1 0 Sanguibacter keddieii 1 53 11 0 Dermabacteraceae family 7151 85020 Dermabacter 1 0 2 1 36739 609 genus 1630135 608 species Dermabacter vaginalis 1 0 1 6 0 110 Brachybacterium genus 6153 43668 Brachybacterium ginsengisoli 1 0 species 1222 1331682 0 1 Brachybacterium sp. VR2415 2017485 1165 species species 43669 1599 Brachybacterium faecium 1 0 species 1085 2017484 Brachybacterium sp. VM2412 1 0 0 1 2623841 972 no rank 0 1 Brachybacterium sp. P6-10-X1 1903186 972 species genus 336 472568 1 Devriesea 2 2 0 1 0 Devriesea agamarum species 472569 334 Micrococcaceae 40 0 869 1 34138 1268 family 2 0 9 Sinomonas 1 1191 596707 genus 1182 37927 species Sinomonas atrocyanea 0 1 2078575 551 genus 0 1 species 551 1618207 1 0 Arthrobacter sp. IHBB 11108 2808 57493 genus Kocuria 33 0 4 1 912 446860 species 1 0 Kocuria flava Kocuria palustris 0 1 879 71999 species 0 1 Kocuria rhizophila species 72000 984 genus 1269 1232 1 Micrococcus 30 2 0 1270 1202 species Micrococcus luteus 0 1 1 Rothia 0 3 3 genus 32207 2364 1807 43675 species Rothia mucilaginosa 0 1 554 2047 species Rothia dentocariosa 1 0 Arthrobacter 0 15 327 1 1663 18101 genus 235627 14114 no rank 12 0 1652545 1479 species 0 1 Arthrobacter sp. YC-RL1 species 1079 2020486 Arthrobacter sp. YN 1 0 species 1414 1494608 Arthrobacter sp. PAMC 25486 1 0 Arthrobacter sp. U41 0 1 species 1487 1849032 Arthrobacter sp. LS16 1 0 species 1690248 1473 0 1 Arthrobacter sp. Rue61a species 657 1118963 species 911 2079227 Arthrobacter sp. PGP41 1 0 0 1 Arthrobacter sp. QXT-31 1357915 1129 species 957 1806905 species Arthrobacter sp. ZXY-2 1 0 1304 290399 species Arthrobacter sp. FB24 1 0 0 1 Arthrobacter sp. ERGS1:01 1407 1704044 species Arthrobacter sp. ATCC 21022 1 0 1771959 817 species Arthrobacter alpinus 0 1 656366 1876 species 0 1 Arthrobacter crystallopoietes 37928 1784 species 1 Glutamicibacter 6 2 0 genus 1742989 1513 Glutamicibacter arilaitensis 0 1 1507 256701 species 1 2 0 2 Paenarthrobacter genus 969 1742992 species 43663 967 Paenarthrobacter aurescens 1 0 1 3 2 0 Renibacterium genus 336 1645 Renibacterium salmoninarum 1 0 species 333 1646 0 4 31 Pseudarthrobacter 1 3283 1742993 genus 85085 1396 species 0 1 Pseudarthrobacter chlorophenolicus 361575 956 species 1 0 Pseudarthrobacter phenanthrenivorans species 121292 900 Pseudarthrobacter sulfonivorans 1 0 2 0 33 Neomicrococcus 1 921 1868332 genus 888 556325 species Neomicrococcus aestuarii 1 0 2641 145357 family Dermacoccaceae 7 0 50 1 1 Dermacoccus 2 0 2 genus 57495 608 1274 606 species Dermacoccus nishinomiyaensis 0 1 0 2 56 Kytococcus 1 1073 57499 genus Kytococcus sedentarius 1 0 species 1276 1017 910 745364 genus Luteipulveratus 2 0 23 1 1 0 Luteipulveratus mongoliensis species 571913 887 28207 85023 family Microbacteriaceae 373 47 0 1 genus 1353 33877 1 17 2 0 Agromyces Agromyces aureus 0 1 453304 1336 species 1 Curtobacterium 0 4 45 genus 2034 2859 69373 697 species Curtobacterium pusillum 0 1 2 0 no rank 2117 257496 1107 1561023 species Curtobacterium sp. MR_MD2014 0 1 1905847 1010 species 1 0 Curtobacterium sp. BH-2-1-1 0 1 1434032 151 genus 1159327 151 species 1 0 Pontimonas salivibrio 310 1655488 no rank 3 0 clade 1655489 310 3 0 1 Rhodoluna 3 0 2 genus 529883 310 species 535712 121 Candidatus Rhodoluna planktonica 0 1 1 0 Rhodoluna lacicola 187 529884 species 1120 518733 genus 1 0 2 Microterricola 1 Microterricola viridarii 1 0 1119 412690 species 1 0 337004 564 genus 0 1 Microcella alkaliphila species 564 279828 2337 69578 genus Cryobacterium 50 3 0 1 no rank 1149 2649013 0 1 species 1978566 1149 1 0 Cryobacterium sp. LW097 species 1138 670052 Cryobacterium arcticum 0 1 10511 33882 genus Microbacterium 193 0 14 1 Microbacterium paludicola 1 0 species 563 300019 Microbacterium aurum 0 1 species 703 36805 Microbacterium hominis 1 0 951 162426 species 0 8 no rank 6717 2609290 0 1 Microbacterium sp. BH-3-3-3 1051 1906742 species species 1938334 605 Microbacterium sp. TPU 3598 0 1 1 0 Microbacterium sp. PAMC 28756 1795053 1256 species 1 0 Microbacterium sp. str. 'China' species 2103230 1046 0 1 Microbacterium sp. 1.5R 511 1916917 species 1 0 Microbacterium sp. XT11 658 367477 species 1 0 Microbacterium sp. No. 7 1095 1714373 species species 1696072 495 0 1 Microbacterium sp. CGR1 species 2033 758 0 1 Microbacterium testaceum 84292 626 species 1 0 Microbacterium chocolatum 1 Clavibacter 6 0 298 genus 1573 3670 1 0 5 913 Clavibacter michiganensis species 3372 28447 0 1 Clavibacter capsici 661 1874630 subspecies Clavibacter sepedonicus 0 1 subspecies 31964 663 subspecies 674 31963 Clavibacter nebraskensis 0 1 0 1 Clavibacter insidiosus 461 33014 subspecies 1938 110932 genus 27 0 2 Leifsonia 1 species 1575 1911 0 1 Leifsonia xyli 1105 447237 genus 0 1 2626248 1105 no rank 1 0 Frondihabitans sp. PAMC 28766 0 1 species 1105 1795630 1 Aurantimicrobium 2 0 6 genus 1705353 297 Aurantimicrobium minutum 1 0 291 708131 species Cnuibacter 0 2 4 1 702 1759331 genus 0 1 Cnuibacter physcomitrellae species 1619308 698 genus 33886 917 1 Rathayibacter 0 3 10 1 0 Rathayibacter tritici species 622 33888 species 285 145458 Rathayibacter toxicus 0 1 577468 88 no rank 0 1 genus 2038 88 1 0 1 0 Tropheryma whipplei species 2039 88 1 Intrasporangiaceae 0 9 36 family 4960 85021 genus 1103 53457 1 Janibacter 11 2 0 species 857417 1092 0 1 Janibacter indicus genus 1538 265976 1 Serinicoccus 11 2 0 1758689 1527 species 1 0 Serinicoccus sp. JLT9 0 2 6 Intrasporangium 1 53357 725 genus Intrasporangium calvum 0 1 species 53358 719 0 2 22 Arsenicicoccus 1 267408 1558 genus no rank 2663846 1536 0 1 1658671 1536 species 1 0 Arsenicicoccus sp. oral taxon 190 family 85018 485 1 0 3 6 Dermatophilaceae 1862 479 genus Dermatophilus 2 0 2 1 species 477 1863 0 1 Dermatophilus congolensis 47044 85010 order Pseudonocardiales 133 0 40 1 46911 2070 family 469 0 39 Pseudonocardiaceae 1 640 1851 genus 0 2 1 Saccharomonospora 1 1 0 Saccharomonospora viridis species 639 1852 1 Prauserella 2 0 2 genus 142577 854 Prauserella marina 0 1 530584 852 species 1344 674734 genus 21 2 0 Alloactinosynnema 1 1323 2636053 no rank 0 1 1323 1653480 species 1 0 Alloactinosynnema sp. L-07 1813 11610 genus Amycolatopsis 159 7 0 1 species 1586 1814 Amycolatopsis methanolica 0 1 Amycolatopsis orientalis 1 0 31958 3100 species Amycolatopsis japonica 1 0 species 208439 1346 2618356 3319 no rank 0 2 1 0 Amycolatopsis sp. AA4 species 1896961 1710 species 1911175 1609 Amycolatopsis sp. BJA-103 1 0 species 33910 2100 Amycolatopsis mediterranei 0 1 96 6 0 Actinoalloteichus 1 65496 6843 genus species 901 340345 Actinoalloteichus hymeniacidonis 0 1 1470176 1582 species Actinoalloteichus hoggarensis 1 0 1495 1612552 species 1 0 Actinoalloteichus sp. ADI127-7 2 0 2644606 2769 no rank Actinoalloteichus sp. AHMU CJ021 0 1 1271 2072503 species 1498 1612551 species 0 1 Actinoalloteichus sp. GBA129-24 genus 1847 9019 1 Pseudonocardia 167 0 8 6 0 7618 2619320 no rank Pseudonocardia sp. AL041005-10 1 0 species 445576 1495 0 1 Pseudonocardia sp. HH130630-07 species 1690815 1008 0 1 Pseudonocardia sp. EC080610-09 1386 1688404 species Pseudonocardia sp. EC080625-04 1 0 1096868 1175 species species 1340 1096856 0 1 Pseudonocardia sp. EC080619-01 1214 1641402 species 1 0 Pseudonocardia sp. HH130629-09 species 240495 1234 1 0 Pseudonocardia dioxanivorans Actinosynnema 3 0 94 1 40566 5939 genus 40567 2937 species Actinosynnema mirum 1 0 Actinosynnema pretiosum 1 0 2908 42197 species 0 1 2071 2194 genus Saccharothrix espanaensis 1 0 species 103731 2194 0 2 7 Lentzea 1 1762 165301 genus 1 0 Lentzea guizhouensis 1586287 1755 species genus 1743 1835 1 2 2 0 Saccharopolyspora species 1741 1836 Saccharopolyspora erythraea 1 0 1 0 1745 2029 genus Kibdelosporangium phytohabitans 0 1 860235 1745 species 1 Kutzneria 10 0 2 genus 2749 43356 Kutzneria albida 1 0 2739 43357 species 5422 85013 order 40 7 0 Frankiales 1 1 6 0 136 Frankiaceae family 5382 74712 genus 1854 5246 1 5 0 57 Frankia species 298654 1632 0 1 Frankia inefficax Frankia casuarinae 0 1 106370 615 species 1 0 no rank 2632575 1297 Frankia sp. EAN1pec 1 0 1297 298653 species Frankia alni 0 1 1859 1645 species 2870 414714 order Catenulisporales 4 0 34 1 1 Catenulisporaceae 21 3 0 family 414877 2836 414878 2815 genus Catenulispora 11 0 2 1 1 0 Catenulispora acidiphila 2804 304895 species 736454 85004 order 26 0 98 Bifidobacteriales 1 736356 31953 family 25 0 3656 Bifidobacteriaceae 1 1 1 0 2 Gardnerella genus 2701 1056 species 2702 1055 Gardnerella vaginalis 0 1 1 1 0 2 Parascardovia genus 1072 196082 species 1071 78258 Parascardovia denticolens 1 0 1 Bifidobacterium 877 19 0 genus 729985 1678 species 1908 28025 0 1 Bifidobacterium animalis Bifidobacterium actinocoloniiforme 0 1 638619 1220 species 1 0 Bifidobacterium longum 216816 173164 species species 1691 900 0 1 Bifidobacterium indicum species 1683 7072 1 0 Bifidobacterium angulatum species 1598 33905 0 1 Bifidobacterium thermophilum Bifidobacterium breve 1 0 species 27887 1685 1684 1670 species Bifidobacterium asteroides 0 1 Bifidobacterium dentium 0 1 3956 1689 species 1 0 2 39238 Bifidobacterium catenulatum species 128930 1686 Bifidobacterium kashiwanohense 0 1 89692 630129 subspecies species 319021 28026 0 1 Bifidobacterium pseudocatenulatum species 4086 158787 Bifidobacterium scardovii 1 0 species 35760 1855 0 1 Bifidobacterium choerinum 814 1687 species 0 1 Bifidobacterium coryneforme 2929 1694 species 1 0 Bifidobacterium pseudolongum 0 1 Bifidobacterium adolescentis species 1680 16460 Bifidobacterium bifidum 0 1 species 35638 1681 587 196081 genus 1 0 species 78259 587 0 1 Scardovia inopinata 1 35 20 0 Actinomycetales order 17557 2037 2489 0 19 Actinomycetaceae 1 2049 17522 family 805 1653174 genus 3 2 0 Actinotignum 1 species 802 59505 Actinotignum schaalii 1 0 genus 28263 430 1 2 0 2 Arcanobacterium Arcanobacterium haemolyticum 0 1 species 28264 428 Trueperella 2 0 9 1 1069494 2066 genus species 1661 2057 0 1 Trueperella pyogenes genus 767 2529408 0 1 Actinomyces meyeri 1 0 52773 767 species genus 9534 1654 1 Actinomyces 299 9 0 Actinomyces gaoshouyii 0 1 1960083 930 species 0 3 4153 2609248 no rank Actinomyces sp. Chiba101 0 1 1245 1851395 species 0 1 Actinomyces sp. oral taxon 897 species 2081702 1435 Actinomyces sp. oral taxon 414 0 1 1473 712122 species 0 1 Actinomyces pacaensis species 1852377 1021 Actinomyces oris 0 1 544580 1474 species 0 1 Actinomyces radicidentis species 1383 111015 species 274 1912795 Actinomyces sp. VUL4_3 0 1 Mobiluncus 76 0 2 1 2050 1431 genus Mobiluncus curtisii 0 1 species 2051 1355 1 Streptomycetales 310 0 82 order 139027 85011 2062 138717 family 0 81 1261 Streptomycetaceae 1 75 0 4840 Streptomyces 1 1883 128883 genus Streptomyces malaysiensis 1 0 species 92644 1510 Streptomyces albus 0 1 3182 1888 species 1 0 Streptomyces puniciscabiei 164348 2102 species 1916 2004 species Streptomyces lividans 0 1 0 1 Streptomyces niveus species 193462 1192 species 1413 1940 1 0 Streptomyces albireticuli 0 1 Streptomyces ambofaciens species 1475 1889 1971 1757 species Streptomyces noursei 0 1 Streptomyces peucetius 1 0 1278 1950 species 1783515 1494 species Streptomyces sp. S10(2016) 1 0 species 29303 2302 1 0 Streptomyces cattleya species 379067 2433 Streptomyces bingchenggensis 0 1 Streptomyces sp. XZHG99 0 1 species 2049881 1059 0 1 Streptomyces pratensis species 1169025 1062 species 1820 1926 1 0 Streptomyces reticuli 1401 553510 species 0 1 Streptomyces gilvosporeus 33903 1430 species Streptomyces avermitilis 0 1 species 1372 1642299 Streptomyces alfalfae 1 0 species 3652 47763 1 0 Streptomyces lydicus 1635 1935 species Streptomyces violaceoruber 0 1 species 1914 1344 Streptomyces lavendulae 0 1 1411 1907 species Streptomyces glaucescens 1 0 1038928 1037 species 1 0 Streptomyces xinghaiensis species 1981 67267 0 1 Streptomyces alboflavus species 1157 285473 Streptomyces rubrolavendulae 1 0 0 1 Streptomyces leeuwenhoekii species 1437453 1786 species 2136 1915 Streptomyces lincolnensis 0 1 Streptomyces pluripotens 1 0 species 1051 1355015 4164 1912 species Streptomyces hygroscopicus 1 0 Streptomyces formicae 1 0 1395 1616117 species Streptomyces pristinaespiralis 1 0 species 1323 38300 1 0 Streptomyces chartreusis species 1743 1969 0 2 3004 629295 species group 0 1 1288 1482558 species subgroup Streptomyces globisporus 0 1 species 1288 1908 species subgroup 1482596 1716 1 0 0 1 Streptomyces griseus species 1911 1716 0 1 Streptomyces fulvissimus species 68202 1394 1847 1901 species 1 0 Streptomyces clavuligerus Streptomyces griseochromogenes 1 0 species 68214 1993 Streptomyces cyaneogriseus 0 1 1446 68192 species Streptomyces albulus 1 0 species 68570 1613 0 24 no rank 2593676 35611 1066 1984801 species 0 1 Streptomyces sp. CLI2509 2196 1841249 species Streptomyces sp. RTd22 1 0 1 0 Streptomyces sp. FR-008 1410 206662 species 2114 1262452 species 1 0 Streptomyces sp. 769 species 1397 1812480 Streptomyces sp. fd1-xmd 1 0 1 0 Streptomyces sp. PAMC 26508 969 1265601 species 1495638 2118 species 1 0 Streptomyces sp. M56 species 1961713 1088 1 0 Streptomyces sp. MOE7 Streptomyces sp. P3 1 0 species 1698 2135430 Streptomyces sp. Mg1 0 1 species 1415 465541 1342 1964449 species 1 0 Streptomyces sp. 3211 0 1 Streptomyces sp. 4F species 1751294 1241 862751 1209 species 0 1 Streptomyces sp. SirexAA-E 1679 234612 species 0 1 Streptomyces sp. TN58 1 0 Streptomyces sp. CdTB01 1874 1725411 species Streptomyces sp. Tue 6075 0 1 1087 1661694 species Streptomyces sp. CCM_MD2014 1 0 1580 1561022 species 1 0 Streptomyces sp. WAC00288 species 2094021 1416 species 1420 444103 Streptomyces sp. CNQ-509 0 1 species 1320 1649184 1 0 Streptomyces sp. CFMR 7 2059884 1568 species 1 0 Streptomyces sp. CMB-StM0423 species 1972846 1702 Streptomyces sp. Sge12 0 1 Streptomyces sp. S8 0 1 928 1837283 species 1 0 Streptomyces sp. SAT1 1849967 1774 species 1662 1930 species Streptomyces scabiei 1 0 408015 1461 species Streptomyces xiamenensis 0 1 75293 1775 species 0 1 Streptomyces autolyticus 1713 68280 species 0 1 Streptomyces violaceusniger 1774 362257 species 1 0 Streptomyces vietnamensis 0 2 1477431 3336 species group 1 0 Streptomyces sampsonii 1522 42239 species 1 0 Streptomyces coelicolor species 1902 1814 68249 3065 species Streptomyces pactum 0 1 species 2584 54571 Streptomyces venezuelae 0 1 1350 42684 species Streptomyces collinus 1 0 2314 146923 species 0 1 Streptomyces parvulus 0 5 153 Kitasatospora 1 2063 8573 genus 1 0 Kitasatospora albolonga 1967 68173 species 0 1 no rank 2633591 2394 1 0 Kitasatospora sp. MMS16-BH015 species 2018025 2394 species 1792 1894 Kitasatospora aureofaciens 0 1 species 2267 2066 Kitasatospora setae 1 0 4 0 7 Nakamurellales 1 1643684 1596 order 85031 1589 family 3 0 41 Nakamurellaceae 1 1548 53460 genus 8 2 0 Nakamurella 1 Nakamurella multipartita 1 0 53461 1540 species 1643682 5186 order 6 8 0 Geodermatophilales 1 76 7 0 Geodermatophilaceae 1 5180 85030 family genus 2626 88138 1 135 2 0 Modestobacter species 477641 2491 Modestobacter marinus 1 0 27 0 2 Geodermatophilus 1 1860 1565 genus Geodermatophilus obscurus 0 1 1538 1861 species Blastococcus 0 2 8 1 913 38501 genus species 138336 905 Blastococcus saxobsidens 1 0 1 1 0 4 Acidothermales order 420 1643683 85032 419 family Acidothermaceae 1 3 0 1 genus 418 28048 1 9 0 2 Acidothermus 1 0 Acidothermus cellulolyticus species 409 28049 0 2 798 1643818 no rank 798 147067 genus 2 0 2 Thermobispora 1 Thermobispora bispora 0 1 species 2006 796 622450 886 order 4 0 3 Actinopolysporales 1 0 3 5 Actinopolysporaceae 1 622451 883 family genus 878 1849 1 3 0 2 Actinopolyspora species 875 414996 Actinopolyspora erythraea 0 1 1 Coriobacteriia 174 32 0 class 91292 84998 0 13 209 Coriobacteriales 1 84999 34412 order 16811 84107 family 367 0 6 Coriobacteriaceae 1 1 3 0 2 Coriobacterium genus 1996 33870 Coriobacterium glomerans 0 1 1993 33871 species 2 0 52 Collinsella 1 10704 102106 genus 1 0 Collinsella aerofaciens 10652 74426 species 0 1 no rank 3744 84113 1 0 Coriobacteriaceae bacterium 68-1-3 species 3744 1531429 1 Atopobiaceae 148 6 0 family 1643824 17392 1058 2767353 genus 1 0 1382 1058 species 1 0 Atopobium parvulum 133925 16186 genus Olsenella 0 4 197 1 1 0 3593 2638792 no rank Olsenella sp. oral taxon 807 0 1 712411 3593 species 1 0 Olsenella uli 133926 5248 species Olsenella sp. Marseille-P2300 1 0 species 1805478 7148 1 Eggerthellales 226 0 18 order 1643822 56706 family 56480 1643826 1 Eggerthellaceae 0 17 9538 genus 3287 79603 1 Denitrobacterium 17 2 0 Denitrobacterium detoxificans 0 1 3270 79604 species 1 Eggerthella 3 0 90 genus 84111 16967 no rank 2858 2648737 0 1 2858 502558 species 0 1 Eggerthella sp. YY7918 84112 14019 species 0 1 Eggerthella lenta genus 627 84162 1 2 0 2 Cryptobacterium Cryptobacterium curtum 1 0 species 625 84163 0 3 144 Gordonibacter 1 644652 13341 genus species 6351 1335613 0 1 Gordonibacter urolithinfaciens Gordonibacter massiliensis 0 1 1841863 6846 species genus 5799 447020 1 2 0 9 Adlercreutzia 5790 446660 species 1 0 Adlercreutzia equolifaciens 0 2 1 Phoenicibacter 1 1981050 1218 genus 0 1 Phoenicibacter massiliensis species 1217 1944646 5703 84108 genus Slackia 0 2 15 1 species 5688 84110 0 1 Slackia heliotrinireducens 0 36 1297 32247 phylum class 188787 32247 1 0 36 188 Deinococci order 2762275 779 0 3 779 332247 family Trueperaceae 10 0 3 1 Truepera 0 2 7 1 332248 769 genus 0 1 Truepera radiovictrix 762 332249 species 1 Deinococcales 298 15 0 order 118964 21060 Deinococcaceae 224 14 0 1 20762 183710 family 1 13 0 245 Deinococcus genus 20538 1298 1182568 1134 species Deinococcus puniceus 0 1 0 1 Deinococcus geothermalis species 68909 1451 Deinococcus radiodurans 0 1 species 1632 1299 1 0 Deinococcus peraridilitoris species 432329 1037 502394 2179 species 0 1 Deinococcus gobiensis 1 0 Deinococcus swuensis species 1182571 2549 no rank 2623546 1582 0 1 Deinococcus sp. NW-56 0 1 1582 2080419 species species 1279 310783 Deinococcus deserti 0 1 0 1 Deinococcus actinosclerus species 1844 1768108 1309411 1989 species Deinococcus soli Cha et al. 2016 0 1 species 2476 55148 Deinococcus proteolyticus 0 1 Deinococcus maricopensis 0 1 1141 309887 species order 10220 68933 1 0 17 74 Thermales 1 Thermaceae 0 16 52 family 188786 10146 1 Thermus 8 0 251 genus 5526 270 1 0 Thermus brockianus 342 56956 species 0 1 no rank 738 2619321 Thermus sp. CCB_US3_UF1 1 0 species 738 1111069 1648 274 species Thermus thermophilus 0 1 1 0 Thermus parvatiensis 456163 626 species Thermus aquaticus 0 1 271 769 species 56957 643 species Thermus oshimai 0 1 1 0 Thermus scotoductus species 37636 509 genus 1885 208447 1 Oceanithermus 2 0 10 1875 187137 species Oceanithermus profundus 0 1 1 0 2 6 Marinithermus genus 186191 444 species 438 186192 0 1 Marinithermus hydrothermalis 65551 2239 genus Meiothermus 17 3 0 1 species 1219 277 Meiothermus ruber 1 0 Meiothermus silvanus 1 0 52022 1003 species 0 720 202 Firmicutes 1 10445066 1239 phylum class 1737404 22694 1 0 19 1 Tissierellia 0 2 no rank 1177 1737407 genus 1177 1582879 1 Ezakiella 19 2 0 0 1 Ezakiella massiliensis 1852374 1158 species 1 Tissierellales 0 16 441 order 21516 1737405 1721 2042895 family 17 3 0 Gottschalkiaceae 1 1 0 2 1 Gottschalkia genus 1704 1505664 1703 1556 species Gottschalkia acidurici 1 0 family 1570339 19354 1 6748 0 12 Peptoniphilaceae 543311 1581 genus Parvimonas 2 0 10 1 Parvimonas micra 0 1 species 33033 1571 genus 1300 162289 1 2 0 2 Peptoniphilus 0 1 2637196 1298 no rank 0 1 Peptoniphilus sp. ING2-D1G 1298 1912856 species 1 0 2 5 Murdochiella genus 1161127 6185 Murdochiella vaginalis 1 0 species 1852373 6180 6 0 2 Finegoldia 1 150022 1670 genus species 1664 1260 0 1 Finegoldia magna 1 2 3 0 Anaerococcus genus 165779 1870 983 1870984 species 1 0 Anaerococcus mediterraneensis 885 33034 species Anaerococcus prevotii 1 0 1 68 31 0 Negativicutes class 909932 58510 order 1843488 13363 1 Acidaminococcales 5 0 28 family 13335 909930 1 Acidaminococcaceae 4 0 27 1 Acidaminococcus 125 3 0 genus 904 13308 905 5975 species 0 1 Acidaminococcus fermentans 187327 7208 species Acidaminococcus intestini 0 1 1 Veillonellales 947 0 11 order 1843489 20262 19315 31977 family 0 10 1010 Veillonellaceae 1 906 8551 genus 0 2 32 Megasphaera 1 0 1 Megasphaera elsdenii 907 8519 species 1188 39948 genus 2 0 91 Dialister 1 species 1097 39950 Dialister pneumosintes 1 0 3 0 2 Negativicoccus 1 909928 1300 genus species 1702287 1297 Negativicoccus massiliensis 0 1 genus 29465 7266 1 19 0 3 Veillonella species 248315 1861 0 1 Veillonella rodentium 1 0 Veillonella parvula species 29466 5386 24817 909929 order 118 0 14 Selenomonadales 1 family 21583 1843491 1 60 9 0 Selenomonadaceae 970 19173 genus Selenomonas 95 0 6 1 9452 2637378 no rank 0 3 Selenomonas sp. oral taxon 478 0 1 712538 3142 species 0 1 Selenomonas sp. oral taxon 920 2755 1884263 species Selenomonas sp. oral taxon 136 0 1 species 713030 3555 species 69823 3599 Selenomonas sputigena 1 0 Selenomonas ruminantium 1 0 species 971 6027 0 2 2 Megamonas 1 158846 2350 genus 0 1 Megamonas hypermegale species 2348 158847 3116 1843490 family 4 0 6 Sporomusaceae 1 365348 3110 genus 11 0 3 Pelosinus 1 0 1 Pelosinus fermentans species 1471 365349 1628 2629460 no rank 0 1 Pelosinus sp. UFO1 0 1 484770 1628 species Limnochordia 8 5 0 1 1676648 1478 class 1 Limnochordales 56 4 0 order 1676649 1470 Limnochordaceae 17 0 3 1 1676650 1414 family genus 1397 1676651 1 Limnochorda 25 2 0 1372 1555112 species 0 1 Limnochorda pilosa class 548021 91061 1 Bacilli 322 0 431 1 Bacillales 264 0 842 order 300695 1385 1 Planococcaceae 39 0 27 family 20606 186818 Planococcus 12 0 101 1 9375 1372 genus 1661 192421 species Planococcus maritimus 1 0 572 1598147 species 0 1 Planococcus faecalis 764 1374 species Planococcus kocurii 1 0 0 1 Planococcus antarcticus species 709 161360 756 1038856 species 0 1 Planococcus plakortidis 0 2 1634 2662419 no rank species 1526927 698 1 0 Planococcus sp. PAMC 21323 Planococcus sp. MB-3u-03 0 1 species 2058136 936 species 820 1215089 Planococcus halocryophilus 0 1 200991 859 species 0 1 Planococcus rifietoensis species 678 1302659 0 1 Planococcus sp. L10.15 1 0 Planococcus donghaensis species 414778 821 genus 718 648802 1 Rummeliibacillus 2 0 3 241244 715 species 1 0 Rummeliibacillus stabekisii 1 2 0 1 Kurthia genus 1066 1649 no rank 2644826 1065 1 0 Kurthia sp. 11kri321 0 1 species 1065 1750719 genus 648800 2561 1 12 0 3 Solibacillus Solibacillus silvestris 0 1 1551 76853 species 0 1 no rank 2637870 998 Solibacillus sp. R5-41 0 1 998 2048654 species genus 1569 5524 1 Sporosarcina 0 5 29 species 836 1476 Sporosarcina psychrophila 0 1 species 2310 1571 Sporosarcina ureae 0 1 2349 2647733 no rank 2 0 0 1 Sporosarcina sp. P33 1930764 1210 species species 1139 1930546 1 0 Sporosarcina sp. P37 2 2 0 Jeotgalibacillus 1 1323 157226 genus Jeotgalibacillus malaysiensis 0 1 species 1508404 1321 512 40 0 Staphylococcaceae 1 29788 90964 family 389 33 0 Staphylococcus 1 25102 1279 genus 1 0 Staphylococcus cohnii species 29382 924 915 1286 species 0 1 Staphylococcus simulans 1 0 805 91994 no rank 0 1 Staphylococcus sp. AntiMn-1 1715860 805 species Staphylococcus nepalensis 1 0 214473 576 species 556 70258 species Staphylococcus piscifermentans 1 0 61015 608 species 1 0 Staphylococcus succinus 1 0 Staphylococcus muscae species 574 1294 Staphylococcus equorum 1 0 246432 742 species 643214 687 species 1 0 Staphylococcus stepanovicii 521 170573 species Staphylococcus pettenkoferi 0 1 623 1283 species 0 1 Staphylococcus haemolyticus Staphylococcus carnosus 0 1 531 1281 species Staphylococcus hyicus 0 1 480 1284 species 767 1292 species 0 1 Staphylococcus warneri 0 1 Staphylococcus pasteuri 1521 45972 species 70255 596 species Staphylococcus condimenti 0 1 1 0 Staphylococcus saprophyticus 743 29385 species 1280 2195 species Staphylococcus aureus 0 1 species 1288 915 Staphylococcus xylosus 1 0 Staphylococcus sciuri 0 1 686 1296 species 454 46127 species Staphylococcus felis 1 0 Staphylococcus pseudintermedius 1 0 283734 740 species 555 985762 species 0 1 Staphylococcus agnetis 0 1 Staphylococcus lutrae 473 155085 species species 29384 690 Staphylococcus kloosii 0 1 1 0 Staphylococcus lugdunensis species 1024 28035 1290 647 species 1 0 Staphylococcus hominis Staphylococcus capitis 0 1 species 29388 838 Staphylococcus epidermidis 1 0 1282 1101 species species 308354 866 0 1 Staphylococcus simiae 0 1 Staphylococcus schleiferi 701 1295 species 0 1 Staphylococcus argenteus 985002 659 species genus 500 2005363 0 1 1849491 500 species Auricoccus indicus 0 1 Macrococcus 2 4 0 1 69965 2474 genus 835 69966 species 0 1 Macrococcus caseolyticus 870 2619255 no rank 0 1 1898474 870 species Macrococcus sp. IME1552 0 1 767 1855823 species Macrococcus canis 1 0 genus 1200 45669 0 1 407035 1200 species Salinicoccus halodurans 1 0 family 7143 186823 1 Alicyclobacillaceae 9 0 37 genus 1129704 1153 1 0 3 22 Kyrpidia species 2055160 474 Kyrpidia sp. EA-1 0 1 657 33943 species 1 0 Kyrpidia tusciae 1 Tumebacillus 41 0 3 genus 3854 432330 species 1214604 1452 Tumebacillus algifaecis 1 0 1 0 Tumebacillus avium species 1903704 2361 2099 29330 genus Alicyclobacillus 23 2 0 1 1 0 Alicyclobacillus acidocaldarius 405212 2076 species Paenibacillaceae 0 46 276 1 186822 92236 family 0 3 2423 85151 no rank 2423 55079 genus 3 0 7 Aneurinibacillus 1 no rank 2642329 1084 0 1 1 0 Aneurinibacillus sp. XH2 species 1084 1450761 1332 1500254 species Aneurinibacillus soli 1 0 1 22 4 0 Brevibacillus genus 4922 55080 species 1393 2022 1 0 Brevibacillus brevis 1 0 Brevibacillus formosus 54913 1261 species Brevibacillus laterosporus 0 1 species 1617 1465 76632 3089 genus 0 2 22 Thermobacillus 1 species 3067 377615 Thermobacillus composti 0 1 44249 81526 genus Paenibacillus 0 36 565 1 Paenibacillus terrae 1 0 species 1639 159743 1616788 1957 species Paenibacillus bovis 1 0 0 1 species group 2044880 3049 483937 3049 species 0 1 Paenibacillus riograndensis species 1895 1126833 1 0 Paenibacillus beijingensis species 2564 1870820 Paenibacillus ihbetae 1 0 species 1227 162209 0 1 Paenibacillus naphthalenovorans Paenibacillus yonginensis 0 1 1462996 2143 species species 4864 1406 1 0 Paenibacillus polymyxa 3118 169760 species 1 0 Paenibacillus stellifer Paenibacillus graminis 0 1 2815 189425 species 1 0 Paenibacillus durus 4234 44251 species 0 1 Paenibacillus kribbensis 172713 1593 species species 949 1763538 Paenibacillus crassostreae 1 0 189426 1411 species Paenibacillus odorifer 1 0 Paenibacillus swuensis 1 0 1178515 1042 species Paenibacillus mucilaginosus 0 1 4252 61624 species species 528191 2008 1 0 Paenibacillus xylanexedens 414771 2721 species Paenibacillus donghaensis 0 1 3033 160799 species 0 1 Paenibacillus borealis 29709 185978 no rank 13 0 species 1068 1566358 0 1 Paenibacillus sp. IHBB 10380 0 1 Paenibacillus sp. Y412MC10 species 2069 481743 species 2794 1536771 0 1 Paenibacillus sp. FSL R5-0912 0 1 Paenibacillus sp. lzh-N1 species 2069255 1330 species 1536772 3441 Paenibacillus sp. FSL R7-0273 0 1 1536774 2857 species 0 1 Paenibacillus sp. FSL H7-0357 1 0 Paenibacillus sp. FSL P4-0081 species 1536769 2781 Paenibacillus sp. FSL R7-0331 1 0 species 3773 1536773 0 1 Paenibacillus sp. JDR-2 2440 324057 species 1695218 1906 species Paenibacillus sp. 32O-W 1 0 1989 1870819 species Paenibacillus sp. BIHB4019 0 1 1536775 1743 species 0 1 Paenibacillus sp. FSL H7-0737 1536770 1518 species Paenibacillus sp. FSL R5-0345 1 0 Paenibacillus larvae 1 0 species 1479 1464 1 0 Paenibacillus sabinae species 2015 365617 Paenibacillus peoriae 1 0 species 1244 59893 1 2 0 2 Sporolactobacillaceae family 1217 186821 no rank 1215 663587 0 1 0 1 [Bacillus] selenitireducens 1215 85683 species 186824 1936 family Thermoactinomycetaceae 1 3 0 1 1 Novibacillus 64 0 2 genus 1677050 1935 Novibacillus thermophilus 1 0 species 1871 1471761 1 Bacillaceae 118 0 241 family 186817 134053 175304 1364 genus 0 2 1 Lentibacillus 1 Lentibacillus amyloliquefaciens 0 1 species 1472767 1363 400634 5297 genus Lysinibacillus 51 0 5 1 Lysinibacillus sphaericus 0 1 species 2746 1421 28031 889 species Lysinibacillus fusiformis 1 0 1145276 787 species 1 0 Lysinibacillus varians 1 0 no rank 2636778 824 species 2072025 824 Lysinibacillus sp. YS11 0 1 1 2 0 1 Amphibacillus genus 29331 1236 1 0 Amphibacillus xylanus 1449 1235 species 0 2 2326 2675230 genus species 905 859143 Bacillus kochii 1 0 species 1421 665099 Bacillus oceanisediminis 1 0 genus 2736 2675229 0 2 species 264697 906 Bacillus muralis 0 1 species 1478 1830 Bacillus simplex 1 0 1 0 58 2993 Bacillus genus 86315 1386 0 1 Bacillus flexus species 797 86664 1 0 Bacillus aryabhattai species 1149 412384 1 0 Bacillus megaterium 2952 1404 species 1215 324767 species Bacillus infantis 0 1 135735 1232 species 0 1 Bacillus endophyticus Bacillus cohnii 1 0 1019 33932 species 0 1 Bacillus methanolicus 1471 1280 species species 142 79881 0 1 Bacillus gibsonii Bacillus beveridgei 0 1 632773 907 species species group 86661 24937 10 0 0 1 Bacillus toyonensis species 155322 866 1405 3742 species Bacillus mycoides 0 1 no rank 2750818 2634 0 3 species 885 2053832 0 1 Bacillus sp. HBCD-sjtu 1839798 1075 species 1 0 Bacillus sp. FDAARGOS_235 Bacillus sp. ABP14 1 0 674 1892404 species 1140 580165 species 0 1 Bacillus cytotoxicus 1428 7349 species Bacillus thuringiensis 0 1 species 1392 723 Bacillus anthracis 1 0 species 1396 7750 1 0 Bacillus cereus Bacillus bombysepticus 1 0 733 658666 species 9 0 species group 653685 18122 species 1423 6123 1 0 Bacillus subtilis 72361 184 species 0 1 Bacillus vallismortis Bacillus licheniformis 1 0 1560 1402 species 0 3 5902 1938374 species subgroup Bacillus amyloliquefaciens 1 0 species 1390 2512 Bacillus siamensis 0 1 species 986 659243 species 492670 2404 0 1 Bacillus velezensis 0 1 Bacillus paralicheniformis species 1343 1648923 1359 119858 species 0 1 Bacillus sonorensis 1452 1651 species Bacillus atrophaeus 0 1 0 1 Bacillus safensis 1778 561879 species species 1664069 1669 0 1 Bacillus glycinifermentans 185979 13320 no rank 0 19 species 395 1127744 Bacillus sp. JS 0 1 1 0 Bacillus sp. YP1 348 1574141 species 0 1 Bacillus sp. 275 species 555 1941347 1138 2026248 species 1 0 Bacillus sp. 1s-1 Bacillus sp. Pc3 1 0 559 1446792 species species 1856406 1139 Bacillus sp. H15-1 0 1 0 1 Bacillus sp. X1(2014) species 1565991 1051 1837130 756 species 1 0 Bacillus sp. FJAT-14266 0 1 Bacillus sp. SJ-10 574 563169 species Bacillus sp. LM 4-2 1 0 1628753 174 species species 1260 1827146 1 0 Bacillus sp. IHB B 7164 1 0 Bacillus sp. (in: Bacteria) 237 1409 species species 201 2049935 Bacillus sp. Lzh-5 0 1 species 1258 98228 0 1 Bacillus sp. OxB-1 1774743 916 species 0 1 Bacillus sp. SDLI1 1 0 Bacillus sp. BH072 species 1570330 289 Bacillus sp. MD-5 1 0 species 2009331 322 1027 666686 species 0 1 Bacillus sp. 1NLA3E 1121 756828 species 0 1 Bacillus sp. WP8 1178537 867 species 0 1 Bacillus xiamenensis 972 1413 species Bacillus cellulosilyticus 1 0 1 0 Bacillus smithii 1479 906 species 0 1 species group 942 1792192 942 293387 species 1 0 Bacillus altitudinis 1398 2973 species 1 0 Bacillus coagulans 0 1 Bacillus weihaiensis 1547283 912 species Bacillus pumilus 1 0 species 1408 3975 0 1 Bacillus horikoshii species 1256 79883 genus 4925 84406 1 Virgibacillus 32 7 0 1397 2620237 no rank 0 2 Virgibacillus sp. 6R 1 0 752 1911587 species 0 1 Virgibacillus sp. SK37 403957 645 species 1 0 Virgibacillus pantothenticus species 797 1473 Virgibacillus halodenitrificans 1 0 species 989 1482 2017483 1010 species 1 0 Virgibacillus phasianinus species 700 163877 1 0 Virgibacillus necropolis genus 1906945 975 1 Parageobacillus 5 2 0 0 1 Parageobacillus thermoglucosidasius species 1426 970 genus 1329200 2172 1 Fictibacillus 3 0 9 species 1221500 966 0 1 Fictibacillus phosphorivorans 0 1 Fictibacillus arsenicus 1197 255247 species 1055323 960 genus 0 1 1 0 Aeribacillus pallidus 33936 960 species 2 0 genus 1434 45667 species 1570 518 Halobacillus halophilus 1 0 1 0 Halobacillus mangrovi species 916 402384 genus 6398 2675234 5 0 2052 79880 species Bacillus clausii 1 0 1 0 Bacillus krulwichiae species 199441 901 species 1570 300825 0 1 Bacillus lehensis species 86665 701 Bacillus halodurans 0 1 79885 1174 species Bacillus pseudofirmus 1 0 Oceanobacillus 4 2 0 1 1887 182709 genus 1883 182710 species Oceanobacillus iheyensis 0 1 1 Geobacillus 0 15 638 genus 9460 129337 species 696 1921421 1 0 Geobacillus genomosp. 3 0 6 2641 2642459 no rank 550542 213 species Geobacillus sp. Y412MC52 0 1 species 396 1233873 0 1 Geobacillus sp. GHH01 581103 881 species 0 1 Geobacillus sp. Y4.1MC1 Geobacillus sp. WCH70 0 1 species 471223 709 species 181 544556 Geobacillus sp. Y412MC61 0 1 Geobacillus sp. C56-T3 1 0 691437 261 species species 129338 763 Geobacillus subterraneus 0 1 Geobacillus thermodenitrificans 0 1 species 33940 900 species 1422 712 Geobacillus stearothermophilus 1 0 4 0 species group 3110 1505648 33941 1325 species Geobacillus thermoleovorans 1 0 169283 770 species Geobacillus lituanicus 1 0 1 0 Geobacillus thermocatenulatus species 545 33938 470 1462 species Geobacillus kaustophilus 0 1 Anoxybacillus 12 0 6 1 4292 150247 genus species 198467 541 0 1 Anoxybacillus gonensis 1 0 Anoxybacillus flavithermus species 1372 33934 species 752 294699 1 0 Anoxybacillus amylolyticus 1615 2639704 no rank 0 2 species 1490057 656 0 1 Anoxybacillus sp. B7M1 Anoxybacillus sp. B2M1 0 1 species 959 1490052 351195 845 genus 0 1 Salimicrobium jeotgali 1 0 species 845 1230341 genus 1190 459532 1 1 0 2 Terribacillus Terribacillus aidingensis 1 0 species 586416 1189 0 9 no rank 539002 5856 0 7 no rank 539742 4460 Exiguobacterium 106 7 0 1 33986 4460 genus 0 4 2644629 2867 no rank Exiguobacterium sp. MH3 0 1 1399115 640 species 669 360911 species 0 1 Exiguobacterium sp. AT1b species 826 1849031 1 0 Exiguobacterium sp. U13-1 1 0 Exiguobacterium sp. ZWU0009 species 732 1224749 332410 626 species Exiguobacterium sibiricum 0 1 Exiguobacterium antarcticum 0 1 species 132920 861 0 2 no rank 1396 539738 1 Gemella 1 2 0 genus 1378 1396 no rank 1395 2624949 0 1 0 1 Gemella sp. oral taxon 928 species 1395 1785995 186820 7018 family Listeriaceae 13 9 0 1 Listeria 6 0 18 1 1637 6290 genus 1 0 Listeria monocytogenes species 2645 1639 species 1495 1638 Listeria ivanovii 0 1 Listeria welshimeri 1 0 species 1643 717 0 1 Listeria innocua species 1642 728 species 1640 687 Listeria seeligeri 1 0 2 0 4 Brochothrix 1 2755 715 genus species 711 2756 0 1 Brochothrix thermosphacta 186826 247004 order Lactobacillales 0 166 2509 1 family 186827 4320 1 5 0 8 Aerococcaceae 4315 1375 genus 113 0 7 Aerococcus 1 1376 752 species Aerococcus urinae 1 0 species 798 51665 Aerococcus urinaeequi 0 1 1377 746 species Aerococcus viridans 1 0 Aerococcus urinaehominis 0 1 128944 713 species 0 1 Aerococcus sanguinicola 589 119206 species 0 1 Aerococcus christensenii 87541 604 species 0 1 no rank 525 263855 1993866 525 species Lactobacillales bacterium 0 1 family 5625 81850 1 Leuconostocaceae 50 0 18 1606 46255 genus 11 6 0 Weissella 1 1249 255 species Weissella paramesenteroides 1 0 759620 347 species Weissella ceti 0 1 1 0 Weissella cibaria species 329 137591 species 423 1631871 Weissella jogaejeotgali 1 0 species 165096 241 Weissella koreensis 1 0 1 9 0 32 Leuconostoc genus 1243 3594 Leuconostoc lactis 1 0 1246 456 species no rank 2685106 388 0 1 1 0 Leuconostoc sp. C2 species 388 979982 225 1252 species 0 1 Leuconostoc carnosum 1 0 Leuconostoc citreum 404 33964 species 1244 632 species 0 1 Leuconostoc gelidum 0 1 Leuconostoc kimchii species 237 136609 255248 440 species Leuconostoc garlicum 1 0 780 1245 species 0 1 Leuconostoc mesenteroides Oenococcus 3 0 2 1 375 46254 genus Oenococcus oeni 0 1 species 1247 372 family 1300 138108 1 2364 49 0 Streptococcaceae Streptococcus 0 43 1587 1 128945 1301 genus 1 0 Streptococcus gallolyticus 315405 2296 species 24745 1311 species 0 1 Streptococcus agalactiae species 1314 3839 1 0 Streptococcus pyogenes species 59310 780 Streptococcus macedonicus 0 1 Streptococcus himalayensis 1 0 1888195 471 species 1 0 Streptococcus uberis 1349 474 species 0 1 Streptococcus pasteurianus 197614 2280 species 0 2 species group 2395 119603 1336 1534 species Streptococcus equi 0 1 Streptococcus dysgalactiae 0 1 species 861 1334 1 0 Streptococcus thermophilus species 1308 2000 no rank 5198 2608887 7 0 species 1759399 555 0 1 Streptococcus sp. A12 1 0 Streptococcus sp. FDAARGOS_192 1424 1839799 species species 1902136 763 Streptococcus sp. NPS 308 0 1 species 712633 538 0 1 Streptococcus sp. oral taxon 431 species 688 1319 0 1 Streptococcus sp. 'group B' Streptococcus sp. I-G2 1 0 species 711 1156431 Streptococcus sp. I-P16 1 0 519 1156433 species Streptococcus mutans 1 0 1053 1309 species 1 0 Streptococcus pluranimalium species 82348 482 1 0 Streptococcus cristatus 45634 636 species species 1961 1318 Streptococcus parasanguinis 0 1 1 0 Streptococcus halotolerans 1814128 557 species Streptococcus acidominimus 0 1 1269 1326 species species 1346 1469 1 0 Streptococcus iniae Streptococcus marmotae 1 0 species 1825069 509 0 1 Streptococcus oralis species 2141 1303 species 1313 1544 Streptococcus pneumoniae 0 1 0 1 Streptococcus parauberis 977 1348 species Streptococcus equinus 1 0 species 967 1335 0 1 Streptococcus merionis 908 400065 species species 2030 28037 Streptococcus mitis 1 0 Streptococcus pseudopneumoniae 0 1 742 257758 species species 1109 1305 1 0 Streptococcus sanguinis species 1302 2044 0 1 Streptococcus gordonii species 102684 6124 1 0 Streptococcus infantarius Streptococcus suis 1 0 13756 1307 species species 1811193 950 Streptococcus pantholopis 0 1 5827 150055 species Streptococcus lutetiensis 1 0 671232 31129 species group 0 3 1403 1338 species Streptococcus intermedius 0 1 24157 1328 species 1 0 Streptococcus anginosus species 76860 5569 0 1 Streptococcus constellatus species 4696 1304 Streptococcus salivarius 1 0 genus 6799 1357 1 Lactococcus 3 5 0 species 1036 1363 1 0 Lactococcus garvieae 0 1 Lactococcus lactis species 1358 4047 Lactococcus raffinolactis 1 0 species 979 1366 species 1364 734 0 1 Lactococcus piscium 1 0 20 92 Enterococcaceae family 42925 81852 1 Enterococcus 12 0 1185 genus 39424 1350 23718 1352 species Enterococcus faecium 1 0 Enterococcus wangshanyuanii 0 1 2005703 1241 species 5303 1351 species 0 1 Enterococcus faecalis 1 0 Enterococcus thailandicus 836 417368 species Enterococcus casseliflavus 0 1 species 37734 515 0 3 2608891 2211 no rank 937 2060307 species 1 0 Enterococcus sp. FDAARGOS_375 species 2057791 676 Enterococcus sp. CR-Ec1 0 1 Enterococcus sp. FDAARGOS_163 1 0 species 2060306 598 1354 1614 species Enterococcus hirae 1 0 Enterococcus mundtii 0 1 species 1351 53346 1450 53345 species 0 1 Enterococcus durans 1 3 0 7 Vagococcus genus 1391 2737 species 747 519472 0 1 Vagococcus teuberi Vagococcus penaei 0 1 species 637 633807 51668 1337 genus 2 0 2 Tetragenococcus 1 1335 51669 species 1 0 Tetragenococcus halophilus 1 Melissococcus 0 2 1 genus 33969 681 Melissococcus plutonius 0 1 680 33970 species Carnobacteriaceae 11 0 11 1 186828 5534 family genus 1470540 1360 1 Jeotgalibaca 0 3 3 no rank 2621505 801 1 0 1903686 801 species 1 0 Jeotgalibaca sp. PTS2502 species 708126 556 1 0 Jeotgalibaca dankookensis Marinilactibacillus 2 0 3 1 850 191769 genus 847 2632303 no rank 0 1 Marinilactibacillus sp. 15R 0 1 1911586 847 species 2747 3313 genus Carnobacterium 7 0 5 1 Carnobacterium maltaromaticum 0 1 species 2751 807 0 2 1705 257487 no rank 0 1 Carnobacterium sp. 17-4 species 1057 208596 species 648 1564681 1 0 Carnobacterium sp. CP1 147709 794 species 0 1 Carnobacterium inhibens 47458 33958 family 230 0 58 Lactobacillaceae 1 0 3 genus 2776 2742598 Lactobacillus fermentum 0 1 species 884 1613 Lactobacillus reuteri 1 0 species 1048 1598 1 0 Lactobacillus mucosae species 844 97478 1253 2969 genus Pediococcus 2 0 6 1 0 1 692 1670797 species group 0 1 Pediococcus acidilactici 1254 692 species Pediococcus pentosaceus 0 1 1255 665 species 114090 484 species 0 1 Pediococcus inopinatus species 51663 608 0 1 Pediococcus damnosus 187452 518 species Pediococcus claussenii 1 0 2767890 528 genus 0 1 species 1193095 528 1 0 Lactobacillus hokkaidonensis 0 6 3417 2767879 genus 1 0 Lactobacillus ginsenosidimutans 1007676 635 species 1602 538 species 0 1 Lactobacillus alimentarius 0 1 Lactobacillus crustorum 392416 530 species species 628 1612 Lactobacillus farciminis 1 0 species 438 1847728 Lactobacillus allii 0 1 species 648 1074467 Lactobacillus heilongjiangensis 1 0 0 1 genus 494 2767877 species 494 148814 Lactobacillus kunkeei 0 1 genus 2767887 7351 0 4 1 0 Lactobacillus salivarius 1624 2082 species 569 89059 species 1 0 Lactobacillus acidipiscis 1601 711 species 0 1 Lactobacillus agilis 3989 1623 species 0 1 Lactobacillus ruminis genus 990 2767889 0 2 Lactobacillus backii 1 0 375175 338 species Lactobacillus coryniformis 1 0 species 652 1610 genus 2767842 2362 0 3 1589 607 species Lactobacillus pentosus 0 1 0 1 Lactobacillus paraplantarum 300 60520 species species 1455 1590 1 0 Lactobacillus plantarum 2767881 749 genus 0 2 53444 279 species 0 1 Lactobacillus lindneri 1 0 Lactobacillus sanfranciscensis 1625 470 species 2767885 1567 genus 0 2 species 879 1599 1 0 Lactobacillus sakei species 28038 688 1 0 Lactobacillus curvatus 3904 2759736 genus 0 3 0 1 Lactobacillus rhamnosus 47715 1140 species 1597 1037 species 1 0 Lactobacillus paracasei 1 0 Lactobacillus casei species 1582 1727 genus 787 2767892 0 1 Lactobacillus paracollinoides 1 0 species 240427 787 genus 13742 1578 1 0 16 898 Lactobacillus Lactobacillus delbrueckii 1 0 1584 2562 species Lactobacillus johnsonii 1 0 33959 1635 species Lactobacillus amylovorus 1 0 species 1604 1056 1596 1075 species Lactobacillus gasseri 1 0 1059 52242 species Lactobacillus gallinarum 0 1 0 1 Lactobacillus amylolyticus species 83683 465 Lactobacillus helveticus 0 1 species 1587 1292 species 267818 680 1 0 Lactobacillus kefiranofaciens 1426 2620435 no rank 0 4 Lactobacillus sp. D1501 0 1 species 332 2108362 Lactobacillus sp. CBA3605 1 0 279 2099788 species species 1545702 418 Lactobacillus sp. wkB8 1 0 2099789 397 species 1 0 Lactobacillus sp. CBA3606 487 1579 species 1 0 Lactobacillus acidophilus Lactobacillus acetotolerans 1 0 species 503 1600 species 604 109790 Lactobacillus jensenii 0 1 genus 2017 2767876 0 1 Lactobacillus amylophilus 1 0 species 1603 2017 genus 1608 2767886 0 3 Lactobacillus zymae 0 1 species 267363 503 1 0 Lactobacillus brevis species 721 1580 637971 384 species 1 0 Lactobacillus koreensis 0 3 2767893 1967 genus Lactobacillus parabuchneri 1 0 species 654 152331 1 0 Lactobacillus buchneri 1581 809 species 1 0 Lactobacillus curieae species 1138822 504 1 Clostridia 219 0 405 class 9781509 186801 order 26435 68295 1 Thermoanaerobacterales 20 39 0 family 399 227387 0 2 1 5 2 0 Thermodesulfobium genus 399 227388 1 0 Thermodesulfobium narugense species 184064 394 1 Thermoanaerobacterales Family IV. Incertae Sedis 7 3 0 family 543372 1266 252965 1259 genus 0 2 2 Mahella 1 species 252966 1257 1 0 Mahella australiensis 13071 186814 family Thermoanaerobacteraceae 40 0 20 1 7756 1754 genus Thermoanaerobacter 9 0 207 1 0 1 Thermoanaerobacter italicus species 108150 845 0 1 Thermoanaerobacter mathranii species 805 583357 0 2 no rank 2636821 1870 Thermoanaerobacter sp. X513 1 0 857 573062 species species 399726 1013 0 1 Thermoanaerobacter sp. X514 species 46354 1067 Thermoanaerobacter wiegelii 1 0 1080 496866 species 1 0 Thermoanaerobacter pseudethanolicus Thermoanaerobacter kivui 1 0 802 2325 species species 29323 1080 Thermoanaerobacter brockii 1 0 Thermacetogenium 10 2 0 1 968 140458 genus species 85874 958 Thermacetogenium phaeum 1 0 1279 129957 genus Carboxydothermus 0 2 3 1 Carboxydothermus hydrogenoformans 0 1 species 1276 129958 genus 249529 815 1 2 0 3 Caldanaerobacter species 812 911092 0 1 Caldanaerobacter subterraneus 0 4 2213 42857 no rank 44260 1353 genus 0 2 8 Moorella 1 1345 1525 species Moorella thermoacetica 0 1 1 Ammonifex 6 2 0 genus 42837 860 1 0 Ammonifex degensii 42838 854 species family 11679 543371 1 Thermoanaerobacterales Family III. Incertae Sedis 13 0 21 1 3 0 8 Thermoanaerobacterium genus 3677 28895 Thermoanaerobacterium thermosaccharolyticum 1 0 species 2191 1517 Thermoanaerobacterium xylanolyticum 0 1 species 29329 1478 44000 7981 genus 191 9 0 Caldicellulosiruptor 1 species 717609 859 0 1 Caldicellulosiruptor obsidiansis 1 0 Caldicellulosiruptor bescii species 31899 953 44001 975 species 0 1 Caldicellulosiruptor saccharolyticus 55205 1241 species Caldicellulosiruptor owensensis 1 0 0 1 Caldicellulosiruptor kristjanssonii species 858 52765 Caldicellulosiruptor lactoaceticus 1 0 species 52766 984 413889 843 species 1 0 Caldicellulosiruptor kronotskyensis 1 0 Caldicellulosiruptor hydrothermalis species 413888 1077 2770089 1929 order 3 0 2770093 953 family 2 0 953 291988 genus 0 2 9 Thermosediminibacter 1 0 1 Thermosediminibacter oceani 944 291990 species family 2770092 976 0 1 0 1 976 499228 genus 499229 976 species Tepidanaerobacter acetatoxydans 0 1 Natranaerobiales 1 3 0 1 1555 485256 order 2 0 1554 485255 family 1 Natranaerobius 2 0 92 genus 375928 1554 species 375929 1462 Natranaerobius thermophilus 0 1 order 186802 9746706 1 14679 0 164 Clostridiales 1 3 0 22 Symbiobacteriaceae family 543349 3691 1 2 0 22 Symbiobacterium genus 2733 3669 3647 2734 species 0 1 Symbiobacterium thermophilum 186806 19855 family Eubacteriaceae 0 4 18 1 1730 18167 genus 2 0 1059 Eubacterium 1 Eubacterium limosum 0 1 species 17108 1736 0 1 33951 1670 genus 1670 33952 species Acetobacterium woodii 0 1 Peptostreptococcaceae 12 0 294 1 134152 186804 family genus 186831 1264 1 Acetoanaerobium 2 0 1 species 1511 1263 Acetoanaerobium sticklandii 1 0 Filifactor 2 2 0 1 1486 44259 genus Filifactor alocis 1 0 species 143361 1484 1 172 2 0 Clostridioides genus 1870884 123171 1496 122999 species 1 0 Clostridioides difficile Paeniclostridium 2 0 2 1 1849828 4029 genus 1505 4027 species Paeniclostridium sordellii 1 0 genus 1481960 1640 1 Peptoclostridium 8 0 2 0 1 Peptoclostridium acidaminophilum species 1632 1731 2268 1411023 no rank 0 1 Peptostreptococcaceae bacterium oral taxon 929 0 1 2081703 2268 species 1 Peptococcaceae 69 29 0 family 32782 186807 genus 1210 278993 1 1 2 0 Thermincola Thermincola potens 0 1 species 863643 1209 1 0 2282742 1257 genus 1 0 Desulfotomaculum acetoxidans 1257 58138 species genus 5138 56112 1 Dehalobacter 4 0 62 55583 1627 species 1 0 Dehalobacter restrictus 0 2 no rank 2635733 3449 Dehalobacter sp. DCA 1 0 species 1147129 1672 species 1777 1131462 1 0 Dehalobacter sp. CF 1 2 0 1 Dehalobacterium genus 3220 51514 species 3219 51515 1 0 Dehalobacterium formicoaceticum 1 4 0 2 Candidatus Desulforudis genus 471826 1376 471827 1372 species Candidatus Desulforudis audaxviator 0 1 1 2 0 Syntrophobotulus 1 51196 2186 genus 2185 51197 species 1 0 Syntrophobotulus glycolicus 1562 5556 genus Desulfotomaculum 5 0 163 1 species 1833852 1563 1 0 Desulfotomaculum ferrireducens 1719 1564 species 1 0 Desulfotomaculum ruminis 59610 918 species 0 1 Desulfotomaculum reducens species 1193 1565 1 0 Desulfotomaculum nigrificans 4209 79206 genus 192 4 0 Desulfosporosinus 1 species 79209 1199 Desulfosporosinus meridiei 1 0 Desulfosporosinus acidiphilus 1 0 1430 885581 species 1388 1563 species Desulfosporosinus orientis 1 0 1 87 0 5 Desulfitobacterium genus 6312 36853 Desulfitobacterium dichloroeliminans 1 0 species 233055 1146 species 49338 2070 1 0 Desulfitobacterium hafniense 0 1 Desulfitobacterium dehalogenans species 1735 36854 species 1274 142877 1 0 Desulfitobacterium metallireducens genus 2249 2282740 0 1 1 0 Desulfotomaculum gibsoniae species 2249 102134 18041 216572 family 3 0 8 Oscillospiraceae 1 18033 459786 genus 2 0 37 Oscillibacter 1 0 1 Oscillibacter valericigenes 17996 351091 species family 186803 5003397 1 Lachnospiraceae 0 27 1290 0 2 no rank 3142101 186928 Lachnospiraceae bacterium oral taxon 500 1 0 species 712991 19526 [Eubacterium] rectale 0 1 species 39491 3122575 1 108 3 0 Butyrivibrio genus 830 25471 13637 43305 species Butyrivibrio proteoclasticus 1 0 0 1 Butyrivibrio hungatei 11726 185008 species 5881 2039240 genus 0 2 11 Anaerotignum 1 1 0 Anaerotignum propionicum 28446 5870 species 1 0 2 122 Anaerostipes genus 207244 196168 1 0 Anaerostipes hadrus 649756 196046 species 0 1 genus 245886 2569097 species 39488 245886 1 0 [Eubacterium] hallii 1 5 0 2 Herbinix genus 1663717 9788 9783 1679721 species 0 1 Herbinix luporum 572511 166206 genus 138 3 0 Blautia 1 species 1322 113875 0 1 Blautia hansenii 0 1 no rank 52193 2648079 Blautia sp. YL58 1 0 species 52193 1796616 Cellulosilyticum 25 2 0 1 4967 698776 genus 4942 29360 species Cellulosilyticum lentocellum 1 0 1506553 156263 genus Lachnoclostridium 500 4 0 1 1 0 Lachnoclostridium phocaeense species 1871021 85168 no rank 2608895 57543 0 1 0 1 Lachnoclostridium sp. YL32 species 1834196 57543 Lachnoclostridium phytofermentans 1 0 66219 13052 species 0 1 187418 28050 genus species 187418 39485 1 0 [Eubacterium] eligens genus 641488 841 1 Roseburia 47 0 2 Roseburia hominis 1 0 641441 301301 species 0 1 genus 2719231 35259 [Clostridium] saccharolyticum 1 0 species 84030 35259 0 1 185211 2719313 genus 1 0 [Clostridium] bolteae 208479 185211 species 481 13 0 Ruminococcaceae 1 4140084 541000 family 1 Flavonifractor 2 0 66 genus 43640 946234 species 292800 43574 Flavonifractor plautii 0 1 3980220 216851 genus Faecalibacterium 668 0 2 1 species 853 3979552 0 1 Faecalibacterium prausnitzii 2 0 26 Ethanoligenens 1 253238 13231 genus species 253239 13205 1 0 Ethanoligenens harbinense no rank 4207 552397 0 1 29343 4207 species [Clostridium] cellulosi 0 1 1 Ruminococcus 183 3 0 genus 86327 1263 species 75739 1160721 0 1 Ruminococcus bicirculans species 10405 1264 1 0 Ruminococcus albus genus 1890281 1 Herbivorax 0 1 no rank 11977 2305133 1 0 Ruminococcaceae bacterium CPB6 0 1 11977 1572656 species 2304686 47141 family 0 12 1 Mageeibacillus 0 2 1 genus 3743 1637257 884684 3742 species Mageeibacillus indolicus 0 1 no rank 2305130 23977 0 1 Ruminiclostridium sp. KB18 1 0 species 1834198 23977 2304692 8045 genus 0 3 1515 2862 species Ruminiclostridium thermocellum 1 0 [Clostridium] clariflavum 0 1 species 3403 288965 Herbivorax saccincola 0 1 species 1780 1677857 0 1 genus 3311 2304691 1510 3311 species 0 1 [Clostridium] stercorarium 0 1 genus 2304693 2619 species 2619 84032 [Clostridium] thermosuccinogenes 1 0 genus 236752 1285 1 0 2 2 Fastidiosipila species 1283 236753 0 1 Fastidiosipila sanguinis genus 4161 1508657 1 Ruminiclostridium 622 0 2 [Clostridium] cellulolyticum 0 1 species 3539 1521 1 381 41 0 Clostridiaceae family 31979 150704 Mordavella 1 0 genus 1981033 237 genus 49082 2198 1 4 0 33 Candidatus Arthromitus 3 0 2638829 2165 no rank 0 1 Candidatus Arthromitus sp. SFB-mouse-NL species 1508644 705 species 627 49118 Candidatus Arthromitus sp. SFB-mouse 0 1 Candidatus Arthromitus sp. SFB-rat-Yit 1 0 1041504 833 species 1 Geosporobacter 21 2 0 genus 2786 390805 species 1424294 2765 1 0 Geosporobacter ferrireducens 141744 1485 genus 0 30 828 Clostridium 1 species 394958 2955 0 1 Clostridium taeniosporum Clostridium argentinense 1 0 species 2696 29341 1494 3312 species 0 1 Clostridium cochlearium Clostridium acetobutylicum 1 0 species 2465 1488 1 0 Clostridium carboxidivorans species 3433 217159 1509 2610 species 1 0 Clostridium sporogenes Clostridium butyricum 1 0 species 1492 4945 Clostridium saccharoperbutylacetonicum 1 0 species 36745 4224 Clostridium pasteurianum 1 0 species 1501 5589 1 0 Clostridium chauvoei species 46867 2371 species 5919 1520 0 1 Clostridium beijerinckii 2521 1538 species Clostridium ljungdahlii 0 1 Clostridium perfringens 0 1 species 1502 4589 1 0 Clostridium estertheticum 2362 238834 species Clostridium autoethanogenum 0 1 species 84023 2511 1497 2587 species Clostridium formicaceticum 1 0 Clostridium novyi 0 1 species 1542 1861 1216932 3202 species 0 1 Clostridium bornimense 0 1 Clostridium saccharobutylicum species 3535 169679 1493 3151 species Clostridium cellulovorans 1 0 2049 1519 species 0 1 Clostridium tyrobutyricum Clostridium scatologenes 0 1 3373 1548 species 0 1 Clostridium aceticum 1956 84022 species no rank 39267 2614128 0 2 35629 1042156 species Clostridium sp. SY8519 1 0 755731 3638 species 0 1 Clostridium sp. BNL1100 4542 1513 species Clostridium tetani 1 0 species 3966 1534 1 0 Clostridium kluyveri Clostridium baratii 1 0 species 1561 4064 1 0 Clostridium botulinum species 1491 14861 3358 114627 genus 0 3 8 Alkaliphilus 1 208226 1680 species Alkaliphilus metalliredigens 1 0 461876 1670 species Alkaliphilus oremlandii 0 1 0 3 1385 68298 family 0 1 genus 129001 544 1 0 Syntrophothermus lipocalidus 544 86170 species 2 2 0 Syntrophomonas 1 841 862 genus 839 863 species Syntrophomonas wolfei 1 0 family 990719 30572 1 Christensenellaceae 0 3 11 1 Christensenella 2 0 315 genus 30561 990721 0 1 Christensenella massiliensis 30246 1805714 species 31984 2956 family 0 3 35 Heliobacteriaceae 1 1 Heliobacterium 0 2 182 genus 2697 2921 species 2739 35701 1 0 Heliobacterium modesticaldum 0 10 no rank 147267 538999 family 543314 4093 1 Clostridiales Family XIII. Incertae Sedis 10 0 4 1 Mogibacterium 12 2 0 genus 2053 86331 0 1 Mogibacterium diversum 114527 2041 species [Eubacterium] sulci 1 0 2030 143393 species 1 418 2 0 Intestinimonas genus 44264 1392389 Intestinimonas butyriciproducens 1 0 1297617 43846 species 0 1 96548 2717089 genus species 96548 2086584 Mordavella sp. Marseille-P3756 1 0 1 3 0 6 Clostridiales Family XVII. Incertae Sedis family 2362 539000 2356 73918 genus 13 0 2 Thermaerobacter 1 Thermaerobacter marianensis 1 0 2343 73919 species 1 Halanaerobiales 7 0 9 order 53433 4479 Halobacteroidaceae 0 3 8 1 53434 1722 family 947 42417 genus 0 1 1 0 Halobacteroides halobius species 947 42422 1 0 genus 28186 767 0 1 Acetohalobium arabaticum species 28187 767 1 0 5 18 Halanaerobiaceae family 2750 972 0 1 genus 32636 819 1 0 Halothermothrix orenii 31909 819 species 2330 1913 genus 25 0 3 Halanaerobium 1 1 0 Halanaerobium praevalens species 2331 1170 Halanaerobium hydrogeniformans 0 1 species 656519 718 1450 33974 no rank 2 0 1 Ndongobacter 6 2 0 genus 1930845 1450 species 1871025 1444 Ndongobacter massiliensis 0 1 0 1 84086 627 no rank endosymbiont 'TC1' of Trimyema compressum 0 1 species 243899 627 11 0 5 Erysipelotrichia 1 526524 30575 class 34 10 0 Erysipelotrichales 1 30570 526525 order Erysipelotrichaceae 9 0 69 1 30536 128827 family 1931 1647 genus Erysipelothrix 3 0 40 1 1027 1648 species Erysipelothrix rhusiopathiae 1 0 864 1514105 species 1 0 Erysipelothrix larvae no rank 544447 9906 0 1 9906 1834207 species 1 0 Erysipelotrichaceae bacterium I46 Turicibacter 0 2 37 1 13473 191303 genus 2638206 13436 no rank 1 0 1 0 Turicibacter sp. H121 13436 1712675 species 1 2 0 30 Faecalibaculum genus 5157 1729679 0 1 Faecalibaculum rodentium species 1702221 5127 phylum 203691 39926 0 57 class 203692 39926 1 107 0 57 Spirochaetia 28490 136 order Spirochaetales 185 0 41 1 family 24988 137 1 170 23 0 Spirochaetaceae 1616789 1376 genus 0 1 1307761 1376 species Salinispira pacifica 0 1 962 1911556 genus 0 2 5 Sediminispirochaeta 1 957 55206 species 0 1 Sediminispirochaeta smaragdinae genus 399320 3973 1 Sphaerochaeta 1 0 4 species 1141 273376 1 0 Sphaerochaeta coccoides 1 0 Sphaerochaeta globosa 1131703 1663 species species 1168 1131707 0 1 Sphaerochaeta pleomorpha 1 Treponema 80 12 0 genus 157 15744 1 0 Treponema paraluiscuniculi 49 53435 species 0 1 no rank 2638727 2397 1 0 Treponema sp. OMZ 838 1539298 2397 species 0 1 Treponema pallidum species 160 46 species 1096 88058 Treponema primitia 0 1 species 150829 1528 Treponema azotonutricium 0 1 1 0 Treponema putidum 221027 2589 species 1935 158 species 0 1 Treponema denticola 1 0 Treponema caldarium species 215591 698 Treponema brennaborense 0 1 81028 1544 species 1 0 Treponema succinifaciens 167 3129 species 1 0 Treponema pedis 409322 653 species 1 Spirochaeta 4 3 0 genus 146 2763 species 46355 1350 Spirochaeta africana 1 0 154 1409 species Spirochaeta thermophila 1 0 family 1643685 3317 1 10 0 17 Borreliaceae 1507 64895 genus Borreliella 32 8 0 1 1 0 Borreliella afzelii species 29518 160 species 152 1674146 Borrelia mayonii 1 0 0 1 Borreliella garinii 479 29519 species 197 62088 species 1 0 Borreliella valaisiana Borreliella bissettii 0 1 species 64897 146 Borreliella bavariensis 0 1 201 664662 species Borreliella burgdorferi 0 1 139 140 species 1 Borrelia 0 8 6 genus 1800 138 0 1 Borrelia duttonii species 159 40834 47466 360 species 0 1 Borrelia miyamotoi 213 44449 species Borrelia recurrentis 1 0 Borrelia parkeri 1 0 141 370 species species 140 134 Borrelia hermsii 0 1 142 388 species 0 1 Borrelia turicatae species 143 170 0 1 Borrelia anserina 0 8 order 1643688 3395 family 170 3395 1 8 0 4 Leptospiraceae 1 0 338321 335 genus 1 0 Turneriella parva species 335 29510 0 6 19 Leptospira 1 171 3056 genus 0 1 Leptospira santarosai species 28183 486 Leptospira biflexa 0 1 species 486 172 species 28452 483 Leptospira alstonii 1 0 species 544 174 Leptospira borgpetersenii 0 1 species 1038 173 Leptospira interrogans 1 0 1 2 0 7 Brachyspirales order 1643686 7934 143786 7932 family 267 6 0 Brachyspiraceae 1 1 0 5 207 Brachyspira genus 7665 29521 1 0 Brachyspira pilosicoli 3376 52584 species 1060 84378 species 0 1 Brachyspira murdochii 1 0 Brachyspira intermedia 84377 1288 species Brachyspira hyodysenteriae 0 1 species 1734 159 5 0 phylum 200940 1178 1178 67799 class 0 5 1178 188710 order 5 0 1178 188711 family 0 5 0 1 444090 182 genus species 1653476 182 0 1 Caldimicrobium thiodismutans 1 Thermodesulfatator 0 2 1 genus 241192 497 171695 496 species Thermodesulfatator indicus 0 1 0 2 499 1740 genus 172 1741 species 0 1 Thermodesulfobacterium commune 327 1295609 species 1 0 Thermodesulfobacterium geofontis 2 0 455 2498710 clade phylum 67814 455 0 2 2 0 class 455 693071 693072 455 order 0 2 Caldisericaceae 4 0 2 1 455 693073 family 451 693074 genus 0 1 1 0 Caldisericum exile 693075 451 species phylum 3937 200783 0 23 1 6 0 23 Aquificae class 187857 3937 order 32069 3287 1 Aquificales 0 19 9 0 10 1740 64898 family 209 2713 genus 0 1 Aquifex aeolicus 1 0 63363 209 species Hydrogenobaculum 6 0 27 1 168657 1160 genus no rank 1133 2622382 0 5 Hydrogenobaculum sp. 3684 1 0 547143 243 species Hydrogenobaculum sp. SHO 0 1 species 547145 243 species 380749 161 1 0 Hydrogenobaculum sp. Y04AAS1 Hydrogenobaculum sp. HO 1 0 species 547144 243 547146 243 species Hydrogenobaculum sp. SN 1 0 0 2 genus 283 75905 136094 123 species 1 0 Thermocrinis albus Thermocrinis ruber 0 1 160 75906 species 0 1 88 939 genus Hydrogenobacter thermophilus 1 0 88 940 species 1 0 6 22 Hydrogenothermaceae family 224027 1281 969 212790 genus Sulfurihydrogenibium 3 0 14 1 species 472 309806 0 1 Sulfurihydrogenibium azorense 0 1 483 2619248 no rank species 483 436114 Sulfurihydrogenibium sp. YO3AOP1 1 0 genus 182899 290 1 Persephonella 0 2 1 species 309805 289 Persephonella marina 1 0 2 0 no rank 257 90150 2 0 5 Thermosulfidibacter 1 257 412592 genus species 412593 252 Thermosulfidibacter takaii 1 0 0 3 1485951 644 order Desulfurobacteriaceae 8 3 0 1 644 558314 family genus 220 171868 0 1 species 220 228745 0 1 Thermovibrio ammonificans 0 1 genus 64159 416 416 64160 species Desulfurobacterium thermolithotrophum 1 0 clade 1783270 18091182 367 0 phylum 456828 551 2 0 551 456826 genus Candidatus Cloacimonas 21 2 0 1 456827 530 species Candidatus Cloacimonas acidaminovorans 1 0 1925 65842 phylum 5 0 204430 1925 class 0 5 16 Fibrobacteria 1 1909 218872 order 4 0 5 Fibrobacterales 1 Fibrobacteraceae 4 0 3 1 1904 204431 family 1900 832 genus 3 2 0 Fibrobacter 1 0 1 Fibrobacter succinogenes species 1897 833 0 352 18084872 68336 clade 13216 1090 phylum 22 0 191410 13216 class 57 22 0 Chlorobia 1 1 Chlorobiales 0 21 145 order 13159 191411 13014 191412 family Chlorobiaceae 88 20 0 1 genus 100715 556 1 Chloroherpeton 3 2 0 1 0 Chloroherpeton thalassium species 553 100716 5971 274493 no rank 0 8 Chlorobium 3 5 0 1 1091 3625 genus species 1094 877 Chlorobium phaeovibrioides 0 1 Chlorobium chlorochromatii 1 0 540 337090 species species 1096 1382 Chlorobium phaeobacteroides 1 0 1 0 Chlorobium limicola species 1092 823 Pelodictyon 0 3 18 1 1099 2346 genus 875 34090 species Pelodictyon phaeoclathratiforme 1 0 Pelodictyon luteolum 1 0 species 1453 1100 1 10 0 5 Prosthecochloris genus 2687 1101 no rank 2632826 1744 3 0 Prosthecochloris sp. HL-130-GSB 1 0 349 1974213 species Prosthecochloris sp. CIB 2401 0 1 species 493 1868325 281093 902 species 0 1 Prosthecochloris sp. GSB1 933 1102 species Prosthecochloris aestuarii 1 0 1 4 0 18 Chlorobaculum genus 3712 256319 1097 852 species Chlorobaculum tepidum 1 0 274539 1397 species Chlorobaculum parvum 1 0 Chlorobaculum limnaeum 1 0 species 274537 1445 0 5 phylum 1134404 2459 1 5 0 6 Ignavibacteria class 2459 795747 0 4 1 Ignavibacteriales 1 2453 795748 order 0 1 1334117 1030 family 0 1 genus 1030 1134403 species 1134405 1030 1 0 Melioribacter roseus 1 2 2 0 Ignavibacteriaceae family 795749 1422 0 1 795750 1420 genus 1420 591197 species 0 1 Ignavibacterium album phylum 976 18069197 1 Bacteroidetes 0 325 38 class 20488 1853228 1 5 15 0 Chitinophagia order 1853229 20483 1 24 14 0 Chitinophagales 0 13 42 Chitinophagaceae 1 563835 20459 family 0 2 genus 5445 79328 species 1961 2029983 Chitinophagaceae bacterium 13 0 1 0 1 Chitinophaga pinensis species 3484 79329 Niastella 0 2 15 1 354354 2751 genus 354356 2736 species Niastella koreensis 1 0 Niabella 2 3 0 1 379899 5513 genus 446683 2376 species Niabella soli 1 0 species 3135 1176587 1 0 Niabella ginsenosidivorans 25 0 2 Filimonas 1 3357 649460 genus 0 1 Filimonas lacunae 3332 477680 species genus 1394 398041 1 Flavisolibacter 0 2 8 species 1386 1492898 0 1 Flavisolibacter tropicus 1957 1769012 genus 0 1 no rank 1957 2636138 0 1 1957 1850526 species Arachidicoccus sp. BS20 1 0 1 Bacteroidia 0 71 125 class 17673322 200643 0 59 2689 Bacteroidales 1 171549 17659912 order no rank 185291 2644 1 0 0 1 Bacteroidales bacterium CF 2644 1400053 species 86 11 0 Bacteroidaceae 1 815 5330633 family 5330547 816 genus 153600 0 10 Bacteroides 1 0 1 Bacteroides helcogenes 290053 310703 species Bacteroides caccae 0 1 629868 47678 species 0 1 Bacteroides ovatus 514015 28116 species Bacteroides caecimuris 0 1 species 611169 1796613 species 271951 28119 0 1 Bacteroides zoogleoformans 1115224 818 species 1 0 Bacteroides thetaiotaomicron 1 0 Bacteroides heparinolyticus 221882 28113 species species 246787 415363 0 1 Bacteroides cellulosilyticus Bacteroides fragilis 1 0 species 817 1086772 family 2005519 257037 1 43 0 3 Barnesiellaceae 397864 256994 genus 0 2 314 Barnesiella 1 Barnesiella viscericola 0 1 256680 397865 species 171550 279400 family 11 0 5 Rikenellaceae 1 239759 276641 genus Alistipes 2 0 201 1 species 214856 276440 0 1 Alistipes finegoldii 1 Mucinivorans 9 2 0 genus 1611681 2748 species 1433126 2739 Mucinivorans hirudinis 0 1 Porphyromonadaceae 20 4 0 1 171551 22898 family genus 22878 836 1 Porphyromonas 0 3 10 1 0 Porphyromonas asaccharolytica 4561 28123 species species 837 18307 1 0 Porphyromonas gingivalis 1 543 0 7 Tannerellaceae family 2005525 1914226 Parabacteroides 0 3 322 1 375288 1792529 genus species 630054 823 1 0 Parabacteroides distasonis 1 0 no rank 1162153 2649774 1162153 2025876 species Parabacteroides sp. CT06 0 1 1 Tannerella 137 0 3 genus 121154 195950 species 112868 28112 1 0 Tannerella forsythia no rank 2620507 8149 0 1 species 8149 712710 Tannerella sp. oral taxon HOT-286 1 0 family 26924 2005520 0 6 genus 8021 1784836 1 2 2 0 Fermentimonas 0 1 Fermentimonas caenicola 1562970 8019 species 1 Proteiniphilum 0 2 12 genus 294702 10641 1 0 Proteiniphilum saccharofermentans species 1642647 10629 Petrimonas 2 0 5 1 8262 307628 genus Petrimonas mucosa 1 0 1642646 8257 species 1 Odoribacteraceae 1 0 3 family 1853231 160903 160902 283168 genus Odoribacter 2 0 7 1 160895 28118 species 0 1 Odoribacter splanchnicus 2 0 2005523 6671 family 1 Paludibacter 2 0 4 genus 6671 346096 185300 6667 species 1 0 Paludibacter propionicigenes no rank 333046 9168129 0 5 genus 511434 2712 1 0 2 1 Candidatus Azobacteroides Candidatus Azobacteroides pseudotrichonymphae 1 0 species 511435 2711 909656 9165417 genus 3 0 Bacteroides vulgatus 1 0 2057060 821 species species 144373 376805 Bacteroides salanitronis 1 0 Bacteroides dorei 0 1 species 6963984 357276 family 171552 487758 1 Prevotellaceae 13 0 11 1 Prevotella 787 0 10 genus 838 487745 0 1 Prevotella intermedia species 414559 28131 10857 52227 species Prevotella dentalis 0 1 species 589436 9168 1 0 Prevotella fusca species 28132 9562 1 0 Prevotella melaninogenica Prevotella enoeca 0 1 7469 76123 species Prevotella ruminicola 0 1 839 11936 species no rank 3880 2638335 0 1 3880 652716 species 0 1 Prevotella sp. oral taxon 299 species 9143 1177574 0 1 Prevotella jejuni species 28129 10384 Prevotella denticola 1 0 1 Marinilabiliales 21 11 0 order 1970189 13285 0 1 family 3722 1573805 genus 3722 2060722 0 1 Marinifilaceae bacterium SPP2 1 0 3722 1717717 species 1 Marinilabiliaceae 0 3 2 family 558415 3151 Alkalitalea 5 2 0 1 3149 1193324 genus 1 0 Alkalitalea saponilacus species 889453 3144 1 4 3 0 Salinivirgaceae family 1988 1970190 genus 1984 1970191 1 Salinivirga 8 2 0 species 1976 1307839 Salinivirga cyanobacteriivorans 1 0 family 1471398 4403 1 3 0 12 Prolixibacteraceae genus 4391 1471399 1 Draconibacterium 9 2 0 0 1 Draconibacterium orientale 1168034 4382 species 262250 117743 class 63 144 0 Flavobacteriia 1 order 200644 262187 1 Flavobacteriales 194 143 0 Ichthyobacteriaceae 6 2 0 1 193 1755828 family 1 0 genus 187 1755829 242600 187 species 0 1 Ichthyobacterium seriolicida family 140071 2762318 22 0 genus 101895 28250 1 Ornithobacterium 0 2 496 Ornithobacterium rhinotracheale 0 1 101399 28251 species 308865 13509 genus Elizabethkingia 68 6 0 1 1 0 Elizabethkingia miricola 3066 172045 species Elizabethkingia anophelis 1 0 1117645 4881 species 1 0 Elizabethkingia genomosp. 4 species 1756150 1698 238 2030 species 1 0 Elizabethkingia meningoseptica 1 0 Elizabethkingia genomosp. 3 1756149 1766 species no rank 19148 2782232 0 10 1 0 genus 2782228 2961 1 0 Chryseobacterium taklimakanense species 2961 536441 genus 16187 59732 1 Chryseobacterium 129 0 9 1 0 Chryseobacterium gallinarum 1324352 1963 species 4316 253 species Chryseobacterium indologenes 0 1 Chryseobacterium camelliae 0 1 species 1265445 1886 0 3 no rank 2593645 4805 species 878220 1493 0 1 Chryseobacterium sp. StRB126 Chryseobacterium sp. T16E-39 0 1 2015076 1337 species 1 0 Chryseobacterium sp. IHB B 17019 species 1721091 1975 Chryseobacterium piperi 1 0 species 558152 1393 Chryseobacterium glaciei 1 0 1695 1685010 species genus 4570 34084 1 3 0 2 Riemerella 0 1 Riemerella anatipestifer species 34085 4567 Weeksella 0 2 7 1 949 1013 genus 0 1 Weeksella virosa species 942 1014 368 313602 no rank 0 2 1 0 genus 1940138 179 179 1415657 species Candidatus Walczuchella monophlebidarum 1 0 189 336809 genus 0 1 189 336810 species Candidatus Sulcia muelleri 0 1 3 0 3 Crocinitomicaceae 1 1853230 1452 family 1449 332102 genus 67 0 2 Fluviicola 1 1 0 Fluviicola taffensis species 191579 1382 1 Flavobacteriaceae 2732 0 102 family 49546 116153 5980 292691 genus 5 0 16 Gramella 1 Gramella sp. LPB0144 1 0 species 1913577 925 1 0 Gramella sp. SH35 2126553 2327 species 1486245 1478 species Gramella flava 0 1 411153 1234 species Gramella forsetii 1 0 genus 1011 143222 1 0 0 1 2633436 1011 no rank 0 1 Salegentibacter sp. T436 species 1011 1729720 4 0 252356 4166 genus 3 0 2615042 3298 no rank 0 1 Maribacter sp. T28 species 1836467 843 1 0 Maribacter sp. 1_2014MBL_MicDiv species 1644130 947 Maribacter sp. HTCC2170 1 0 313603 1508 species 0 1 Maribacter cobaltidurans 868 1178778 species 5 0 4 Nonlabens 1 363408 2841 genus Nonlabens dokdonensis 1 0 species 328515 702 636 319236 species 1 0 Nonlabens sediminis 2615035 1499 no rank 0 2 1 0 Nonlabens sp. MIC269 657 1476901 species 2058134 842 species 1 0 Nonlabens sp. MB-3u-79 1386 225842 genus 0 2 0 2 2644710 1386 no rank species 1336795 565 Formosa sp. Hel3_A1_48 0 1 0 1 Formosa sp. Hel1_33_131 821 1336794 species Lutibacter 2 0 23 1 1101 358023 genus species 1622118 1078 Lutibacter profundi 0 1 13184 237 genus 14 0 9 Flavobacterium 1 Flavobacterium gilvum 0 1 species 1492737 1833 species 842 55197 Flavobacterium branchiophilum 0 1 1956 1306519 species Flavobacterium commune 0 1 749 312277 species 0 1 Flavobacterium indicum 1 0 Flavobacterium psychrophilum 892 96345 species Flavobacterium crassostreae 0 1 1763534 1261 species 1 0 Flavobacterium columnare 996 1861 species 1 0 Flavobacterium johnsoniae 986 3776 species 0 1 216431 802 genus 1 0 Croceibacter atlanticus 802 313588 species Myroides 5 0 99 1 76831 8655 genus 0 2 no rank 2642485 2701 Myroides sp. A21 0 1 species 1149 1583100 1 0 Myroides sp. ZB35 species 1552 1458492 species 76832 4634 Myroides odoratimimus 0 1 0 1 Myroides profundi 480520 1221 species 0 2 no rank 61432 2009 919 531844 species 1 0 Flavobacteriaceae bacterium 3519-10 1150389 1090 species 0 1 Flavobacteriaceae bacterium UJ101 genus 2710 291183 1 Lacinutrix 2 0 4 species 1486034 972 0 1 Lacinutrix venerupis no rank 1736 2647285 0 2 1 0 Lacinutrix sp. 5H-3-7-4 829 983544 species 1 0 Lacinutrix sp. Bg11-31 species 2057808 907 1649495 878 genus 0 1 1 0 878 2622645 no rank 878 1936081 species 0 1 Seonamhaeicola sp. S2-3 1551 286104 genus 1 0 3 Winogradskyella 1 0 2 no rank 2615021 1550 species 900 1936080 Winogradskyella sp. J14-2 0 1 species 650 754409 Winogradskyella sp. PG-2 1 0 genus 1429 178469 0 1 species 1429 616991 0 1 Arenibacter algicola 0 1 2700084 1213 genus Lutibacter sp. LPB0138 1 0 1850246 1213 species 1 Cellulophaga 0 4 3 genus 104264 3073 Cellulophaga baltica 0 1 species 76594 1145 Cellulophaga lytica 0 1 1206 979 species Cellulophaga algicola 0 1 719 59600 species 1 4 0 5 Tenacibaculum genus 3767 104267 107401 881 species Tenacibaculum maritimum 1 0 Tenacibaculum jejuense 0 1 species 584609 934 669041 993 species Tenacibaculum dicentrarchi 1 0 0 1 Tenacibaculum todarodis 955 1850252 species 734 389486 genus Sediminicola 1 0 2 1 0 1 733 2648869 no rank 733 1453352 species 0 1 Sediminicola sp. YIK13 1076 261827 genus 0 1 Algibacter alginicilyticus 0 1 species 1076 1736674 0 1 genus 1125 83612 1 0 Psychroflexus torquis species 1125 57029 1 Tamlana 1 2 0 genus 1008 393005 1 0 Tamlana sp. UJ94 1007 2069432 species genus 975 1518147 1 0 1790137 975 species 0 1 Wenyingzhuangia fucanilytica 326319 1878 genus Dokdonia 4 4 0 1 no rank 2615033 1161 2 0 Dokdonia sp. MED134 0 1 species 313590 589 Dokdonia sp. 4H-3-7-5 1 0 983548 572 species species 326320 713 1 0 Dokdonia donghaensis genus 1176327 1005 1 0 1 0 no rank 1005 2636237 Aureitalea sp. RR4-38 1 0 2094025 1005 species 0 1 genus 1209327 1636 0 1 Flavivirga eckloniae 1803846 1636 species 1204360 1259 genus 0 1 762954 1259 species 0 1 Siansivirga zeaxanthinifaciens 336276 607 genus 0 1 607 2615019 no rank 1 0 species 607 2058135 0 1 Olleya sp. Bg11-27 1 6 2 0 Zunongwangia genus 1425 417127 species 398743 1419 Zunongwangia profunda 0 1 1 15 0 154 Capnocytophaga genus 32593 1016 327575 3141 species 0 1 Capnocytophaga leadbetteri Capnocytophaga sputigena 0 1 1019 3696 species 1848904 2671 species Capnocytophaga stomatis 1 0 2383 28189 species 0 1 Capnocytophaga cynodegmi 1 0 Capnocytophaga ochracea 2713 1018 species Capnocytophaga gingivalis 1 0 species 1017 1189 no rank 12527 2640652 0 6 1945658 1774 species 1 0 Capnocytophaga sp. H4358 species 1705617 2330 0 1 Capnocytophaga sp. oral taxon 323 Capnocytophaga sp. ChDC OS43 0 1 209053 1738 species species 1447 1945657 1 0 Capnocytophaga sp. H2931 3120 1316596 species 0 1 Capnocytophaga sp. oral taxon 878 species 1316593 2118 Capnocytophaga sp. oral taxon 864 0 1 1 0 Capnocytophaga canimorsus species 28188 2223 45243 1896 species Capnocytophaga haemolytica 1 0 genus 1093 252306 1 11 2 0 Robiginitalea Robiginitalea biformata 0 1 species 252307 1082 964 153265 genus 1 0 0 1 Aequorivita sublithincola 101385 964 species 1 0 3 5 Muricauda genus 3207 111500 1855 111501 species 1 0 Muricauda ruestringensis 1 0 Muricauda lutaonensis species 1347 516051 2 0 14 Zobellia 1 1521 112040 genus 1 0 Zobellia galactanivorans species 63186 1507 6 0 20 Polaribacter 1 5559 52959 genus 1774273 1582 species Polaribacter vadi 1 0 0 3 no rank 196858 3022 species 1279 2058137 Polaribacter sp. ALD11 1 0 313598 775 species 0 1 Polaribacter sp. MED152 968 1529069 species Polaribacter sp. BM10 1 0 species 935 996801 0 1 Polaribacter reichenbachii 1333713 2252 family 0 2 2 0 15 Owenweeksia 1 267986 2252 genus 2237 253245 species Owenweeksia hongkongensis 0 1 9 0 39782 1504 family genus 34098 1504 1 0 9 40 Blattabacterium species 187 164514 1 0 Blattabacterium punctulatus 0 6 no rank 2647581 1028 Blattabacterium sp. (Mastotermes darwiniensis) 0 1 123 39768 species 1 0 Blattabacterium sp. (Nauphoeta cinerea) species 1316444 220 Blattabacterium sp. (Blaberus giganteus) 1 0 179 1186051 species Blattabacterium sp. (Periplaneta americana) 0 1 237 367488 species 1 0 Blattabacterium sp. (Blatta orientalis) species 367806 99 1 0 Blattabacterium sp. (Blattella germanica) 624186 170 species 1 0 Blattabacterium cuenoti 1653831 249 species 1 7 0 122 Bacteroidetes Order II. Incertae sedis order 1100069 6606 6484 563843 family 6 0 45 Rhodothermaceae 1 0 1 1196022 2280 no rank 1 0 Rhodothermaceae bacterium RA 2280 1779382 species Salinibacter 2 0 6 1 146918 832 genus species 146919 826 0 1 Salinibacter ruber 29548 3327 genus Rhodothermus 0 2 7 1 3320 29549 species 1 0 Rhodothermus marinus 1937959 2656 class 4 0 5 Saprospiria 1 4 0 14 Saprospirales 1 1936988 2652 order 1937961 2032 family 0 1 2349 2032 genus 0 1 0 1 Haliscomenobacter hydrossis species 2350 2032 family 89374 606 2 0 1007 606 genus Saprospira 3 2 0 1 Saprospira grandis 0 1 603 1008 species Sphingobacteriia 24 0 35 1 36951 117747 class 1 0 23 37 Sphingobacteriales order 200666 36916 1 Sphingobacteriaceae 72 22 0 family 36879 84566 24 6 0 Pedobacter 1 84567 12253 genus 2660 984 species Pedobacter heparinus 0 1 1 0 no rank 2120 2628915 species 2120 1727164 0 1 Pedobacter sp. PACM 27299 2204 363852 species Pedobacter ginsengisoli 1 0 2692 430522 species 1 0 Pedobacter steynii Pedobacter cryoconitis 0 1 species 188932 2553 genus 28453 9912 1 Sphingobacterium 21 0 6 4 0 no rank 2609468 7967 0 1 Sphingobacterium sp. ML3W 1538644 1450 species 2303 1933220 species Sphingobacterium sp. B29 0 1 Sphingobacterium sp. 21 1 0 species 1844 743722 Sphingobacterium sp. G1-14 0 1 2003121 2370 species 1924 1010 species 1 0 Sphingobacterium mizutaii no rank 84568 2218 1 0 0 1 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 1986952 2218 1 8 0 2 Solitalea genus 929509 2713 995 2705 species 1 0 Solitalea canadensis 423349 6864 genus 0 4 8 Mucilaginibacter 1 Mucilaginibacter sp. BJC16-A31 1 0 species 1763 1234841 1 0 Mucilaginibacter gotjawali species 1550579 2668 0 1 2617802 2425 no rank Mucilaginibacter sp. PAMC 26640 0 1 species 1300914 2425 1649482 2847 genus 7 0 2 Pseudopedobacter 1 Pseudopedobacter saltans 0 1 2840 151895 species class 66886 768503 1 72 58 0 Cytophagia 66814 768507 order Cytophagales 140 57 0 1 1549 1937968 family Bernardetiaceae 0 3 11 1 0 2 1 Bernardetia 1 1937972 1538 genus species 1537 999 1 0 Bernardetia litoralis 1 51 0 17 Cytophagaceae family 18406 89373 861914 1562 genus 4 0 2 Fibrella 1 1 0 no rank 2620963 1558 species 1558 1834519 0 1 Fibrella sp. ES10-3-2-2 genus 120831 2112 1 2 2 0 Dyadobacter Dyadobacter fermentans 0 1 94254 2110 species Runella 2 0 7 1 2819 105 genus species 2812 106 Runella slithyformis 0 1 1 18 6 0 Spirosoma genus 107 8474 species 1695 2057025 Spirosoma sp. HA7 0 1 1211326 1618 species Spirosoma aerolatum 1 0 Spirosoma rigui 1 0 species 564064 1500 0 1 Spirosoma radiotolerans species 1379870 1966 species 1178516 1677 1 0 Spirosoma montaniterrae 1 Leadbetterella 0 2 7 genus 1656 319458 species 1649 316068 Leadbetterella byssophila 1 0 4 2 0 Cytophaga 1 978 1732 genus Cytophaga hutchinsonii 0 1 species 985 1728 family 5363 200667 1 Flammeovirgaceae 0 4 19 0 2 8 Flammeovirga 1 2834 59739 genus 1 0 2826 2637820 no rank Flammeovirga sp. MY04 1 0 species 2826 1191459 0 1 340671 2510 no rank Flammeovirgaceae bacterium 311 0 1 species 1257021 2510 0 2 family 952 2762301 952 869806 genus Marivirga 1 0 2 1 species 951 1006 1 0 Marivirga tractuosa 563798 6601 family Cyclobacteriaceae 9 0 44 1 0 1 1106 232244 genus 0 1 Belliella baltica species 232259 1106 1 Echinicola 15 2 0 genus 390846 2194 Echinicola vietnamensis 1 0 species 390884 2179 1 6 0 3 Cyclobacterium genus 2521 68288 Cyclobacterium amurskyense 1 0 1121 320787 species Cyclobacterium marinum 0 1 species 104 1394 736 246875 genus 2 0 2 Algoriphagus 1 species 734 1727163 Algoriphagus sp. M8-2 0 1 1 Hymenobacteraceae 52 0 16 family 1853232 29260 323449 4121 genus Pontibacter 5 0 3 1 species 1902 400092 0 1 Pontibacter korlensis 1 0 Pontibacter akesuensis 2214 388950 species 1 Hymenobacter 125 0 8 genus 89966 19229 Hymenobacter swuensis 1 0 species 2752 1446467 no rank 2615202 13458 0 5 2671 1484116 species Hymenobacter sp. PAMC 26554 0 1 1 0 Hymenobacter sp. PAMC 26628 3228 1484118 species 0 1 Hymenobacter sp. DG25A 1385663 2115 species species 2542 1385664 1 0 Hymenobacter sp. DG25B species 1356852 2902 1 0 Hymenobacter sp. APR13 Hymenobacter sedentarius 1 0 1411621 2894 species genus 5858 1379908 1 Rufibacter 21 4 0 0 2 2639626 3277 no rank 1597 1379909 species Rufibacter sp. DG15C 1 0 Rufibacter sp. DG31D 0 1 1680 1379910 species Rufibacter tibetensis 1 0 species 512763 2560 0 3 6 Amoebophilaceae 1 1501348 502 family 273135 326 genus 0 1 0 1 no rank 2641185 326 species 249402 326 Cardinium endosymbiont of Encarsia pergandiella 1 0 1 0 281119 170 genus Candidatus Amoebophilus asiaticus 1 0 species 281120 170 family 1853234 4041 2 0 4041 59740 genus Persicobacter 5 0 2 1 0 1 no rank 4036 2664020 0 1 Persicobacter sp. JZB09 species 4036 1085624 142182 3834 phylum 0 8 219685 3834 class 19 8 0 Gemmatimonadetes 1 Gemmatimonadales 77 7 0 1 219686 3815 order 3738 219687 family Gemmatimonadaceae 6 0 48 1 1 Gemmatirosa 2 0 6 genus 2154 1706036 species 861299 2148 Gemmatirosa kalamazoonesis 0 1 1 Gemmatimonas 9 3 0 genus 1536 173479 Gemmatimonas phototrophica 1 0 741 1379270 species Gemmatimonas aurantiaca 1 0 species 786 173480 27818 32066 phylum 0 23 27818 203490 class 0 23 10 Fusobacteriia 1 order 27808 203491 1 Fusobacteriales 51 0 22 family 203492 20507 1 16 0 12 Fusobacteriaceae Fusobacterium 63 9 0 1 19650 848 genus Fusobacterium necrophorum 1 0 species 1012 859 Fusobacterium hwasookii 0 1 species 1583098 1885 849 961 species Fusobacterium gonidiaformans 1 0 species 3509 860 1 0 Fusobacterium periodonticum 2654 856 species 0 1 Fusobacterium varium species 850 1385 1 0 Fusobacterium mortiferum 0 1 Fusobacterium ulcerans 1095 861 species Fusobacterium nucleatum 1 0 7086 851 species 1 1 0 2 Ilyobacter genus 167639 841 Ilyobacter polytropus 1 0 840 167642 species 7250 1129771 family Leptotrichiaceae 33 0 9 1 924 168808 genus 0 1 species 924 187101 1 0 Sneathia amnii genus 34104 970 0 1 0 1 Streptobacillus moniliformis 34105 970 species 5 0 8 Leptotrichia 1 3938 32067 genus Leptotrichia buccalis 0 1 species 998 40542 3 0 2633022 2932 no rank Leptotrichia sp. oral taxon 212 1 0 species 712357 1271 869 712368 species Leptotrichia sp. oral taxon 498 0 1 species 1785996 792 Leptotrichia sp. oral taxon 847 1 0 0 1 32068 1385 genus 1385 826 species 1 0 Sebaldella termitidis 943 68297 phylum 2 0 2 0 class 203486 943 order 203487 943 2 0 0 2 family 943 203488 2 0 943 13 genus 1 0 Dictyoglomus turgidum 480 513050 species 463 14 species 0 1 Dictyoglomus thermophilum phylum 563 2138240 0 1 2138243 563 class 0 1 0 1 order 563 2138246 family 2138247 563 1 0 0 1 563 68335 genus Coprothermobacter proteolyticus 0 1 species 563 35786 1764782 1224 phylum Proteobacteria 0 2000 598 1 class 401871 28216 1 Betaproteobacteria 0 347 776 20423 206389 order Rhodocyclales 22 0 241 1 1 12 0 649 Zoogloeaceae family 2008794 14519 12960 5088 genus Azoarcus 147 5 0 1 1020 2067960 species 1 0 Azoarcus sp. SY39 2881 2629479 no rank 0 2 1407 748247 species 1 0 Azoarcus sp. KH32C 198107 1474 species 0 1 Azoarcus sp. CIB 0 1 Azoarcus olearius 418699 1040 species 1 0 6 212 Thauera genus 33057 8782 0 1 Thauera chlorobenzoica species 1267 96773 Thauera humireducens 1 0 species 1134435 1902 59405 1285 species 1 0 Thauera aromatica 2609274 4116 no rank 0 2 species 85643 2053 Thauera sp. MZ1T 1 0 1 0 Thauera sp. K11 species 2005884 2063 1300 2008795 family Azonexaceae 3 0 21 1 genus 73029 1279 1 Dechloromonas 2 0 13 0 1 Dechloromonas aromatica 259537 1266 species 4363 75787 family 0 6 63 Rhodocyclaceae 1 821 551759 genus 2 0 18 Aromatoleum 1 0 1 Aromatoleum aromaticum 803 551760 species genus 2177 146937 1 87 0 2 Azospira 2090 146939 species 0 1 Azospira oryzae 0 1 75788 1302 no rank species 1898103 1302 Rhodocyclaceae bacterium 1 0 1237 33809 no rank 2 0 Betaproteobacteria bacterium GR16-43 1 0 species 1045 1904640 beta proteobacterium CB 0 1 543913 192 species 1 Nitrosomonadales 132 44 0 order 32003 16875 5152 206379 family Nitrosomonadaceae 22 12 0 1 1 Nitrosospira 4 0 16 genus 2338 35798 species 35799 998 Nitrosospira briensis 1 0 1 0 Nitrosospira lacus species 1288494 711 Nitrosospira multiformis 1 0 1231 613 species 1 Nitrosomonas 11 0 7 genus 2792 914 1 0 Nitrosomonas eutropha species 916 595 species 382 44577 0 1 Nitrosomonas ureae 0 1 Nitrosomonas europaea 610 915 species no rank 2609265 848 0 2 153948 347 species Nitrosomonas sp. AL212 1 0 1 0 Nitrosomonas sp. Is79A3 261292 501 species 346 44574 species 1 0 Nitrosomonas communis family 2772226 1665 4 0 61 2 0 Sulfuricella 1 807 935200 genus species 649841 746 Sulfuricella denitrificans 1 0 1 Sulfuriferula 0 2 63 genus 1778653 858 0 1 2637784 795 no rank 795 1985873 species 0 1 Sulfuriferula sp. AH1 512 2008790 family Thiobacillaceae 3 0 15 1 Thiobacillus 2 0 8 1 497 919 genus 1 0 Thiobacillus denitrificans 36861 489 species 2008793 2566 family Sterolibacteriaceae 0 5 82 1 378210 1124 genus Methyloversatilis 2 0 14 1 no rank 1110 2639971 0 1 1 0 Methyloversatilis sp. RAC08 1842540 1110 species Sulfuritalea 9 2 0 1 1054211 1360 genus 0 1 Sulfuritalea hydrogenivorans 748811 1351 species 1 14 0 20 Methylophilaceae family 32011 4482 genus 1679002 529 1 Candidatus Methylopumilus 0 3 1 species 1581557 260 1 0 Candidatus Methylopumilus planktonicus Candidatus Methylopumilus turicensis 1 0 species 1581680 268 genus 629 16 1 2 0 5 Methylophilus 624 2630143 no rank 1 0 0 1 Methylophilus sp. TWE2 624 1662285 species Methylotenera 0 3 11 1 694 359407 genus Methylotenera versatilis 1 0 species 1055487 307 species 376 359408 0 1 Methylotenera mobilis genus 928 404 1 Methylobacillus 4 0 2 1 0 Methylobacillus flagellatus species 405 924 1682 81682 genus 24 0 3 Methylovorus 1 species 1104 266009 1 0 Methylovorus glucosotrophus 554 2634027 no rank 0 1 887061 554 species 0 1 Methylovorus sp. MP688 0 5 61 Gallionellaceae 1 2366 90627 family 40 0 2 Sideroxydans 1 1363 314343 genus 1323 63745 species Sideroxydans lithotrophicus 0 1 1 Gallionella 2 0 9 genus 96 942 933 370405 species Gallionella capsiferriformans 0 1 35 0 601 Neisseriales 1 206351 34969 order Neisseriaceae 0 21 197 1 17947 481 family no rank 518 421605 0 1 2052837 518 species 0 1 Neisseriaceae bacterium DSM 100970 genus 482 13596 1 Neisseria 12 0 258 2581 487 species 0 1 Neisseria meningitidis species 488 1422 Neisseria mucosa 0 1 species 1853278 1518 Neisseria sp. 10023 0 1 2623750 2581 no rank 0 2 655307 1709 species 1 0 Neisseria sp. KEM232 1 0 Neisseria sp. 10022 species 872 1853276 0 1 Neisseria gonorrhoeae 485 773 species 1 0 Neisseria zoodegmatis 1311 326523 species 0 1 Neisseria sicca species 490 787 0 1 Neisseria lactamica 1006 486 species species 28091 712 1 0 Neisseria weaveri 1 0 Neisseria elongata 647 495 species 417 71 genus 0 1 1 0 Simonsiella muelleri 417 72 species 1405 59 genus Vitreoscilla 3 0 35 1 no rank 2627922 425 0 1 96942 425 species 0 1 Vitreoscilla sp. C1 Vitreoscilla filiformis 0 1 945 63 species 1 11 2 0 Eikenella genus 538 1155 species 1144 539 Eikenella corrodens 0 1 0 1 659 1193515 genus 0 1 Snodgrassella alvi species 1196083 659 1 Chromobacteriaceae 283 13 0 family 16421 1499392 7 2 0 Aquaspirillum 1 1839 187 genus 0 1 no rank 1832 2620219 Aquaspirillum sp. LM1 0 1 1832 1938604 species 4 0 90153 9083 no rank 1 172 4 0 Chromobacterium genus 9083 535 species 536 2673 Chromobacterium violaceum 1 0 2627 2641838 no rank 0 1 2627 2059672 species 1 0 Chromobacterium sp. ATCC 53434 1 0 Chromobacterium vaccinii 1108595 3611 species 1317 885864 genus 2 0 28 Jeongeupia 1 0 1 1289 2619593 no rank Jeongeupia sp. USM3 0 1 species 1906741 1289 Laribacter 52 2 0 1 1915 168470 genus 0 1 Laribacter hongkongensis 168471 1863 species 1984 568394 genus Pseudogulbenkiania 37 0 2 1 2642558 1947 no rank 0 1 1 0 Pseudogulbenkiania sp. NH8B 748280 1947 species order 80840 325931 1 0 233 3905 Burkholderiales 80841 12491 no rank 0 2 Burkholderiales bacterium YL45 1 0 11534 1834205 species 957 1469502 species Burkholderiales bacterium GJ-E10 0 1 family 75682 38383 1 Oxalobacteraceae 409 0 29 genus 29580 7901 1 Janthinobacterium 155 0 7 4 0 no rank 5104 2610881 0 1 Janthinobacterium sp. Marseille 375286 1039 species species 1350 1938606 Janthinobacterium sp. LM6 0 1 1 0 Janthinobacterium sp. B9-8 1236179 875 species species 1840 1644131 Janthinobacterium sp. 1_2014MBL_MicDiv 0 1 55508 1217 species Janthinobacterium agaricidamnosum 1 0 species 368607 1425 0 1 Janthinobacterium svalbardensis 1 Collimonas 112 0 4 genus 202907 5744 1 0 Collimonas fungivorans species 1684 158899 Collimonas arenae 1 0 species 279058 2446 Collimonas pratensis 0 1 1502 279113 species genus 1454 303379 1 Herminiimonas 3 0 4 1 0 Herminiimonas arsenicoxydans 831 204773 species 619 1809410 species 1 0 Herminiimonas arsenitoxidans 6 0 179 Massilia 1 149698 11215 genus 0 1 Massilia putida species 2103 1141883 Massilia sp. B2 1 0 species 1555 2045208 0 2 no rank 2609279 4896 1707785 1806 species 0 1 Massilia sp. WG5 Massilia sp. NR 4-1 1 0 3090 1678028 species species 2072590 2482 1 0 Massilia sp. ZMN-3 10366 963 genus 379 6 0 Herbaspirillum 1 0 1 2624150 1225 no rank 1225 2025949 species Herbaspirillum sp. meg3 1 0 species 1656 80842 Herbaspirillum rubrisubalbicans 0 1 0 1 Herbaspirillum hiltneri species 1427 341045 Herbaspirillum seropedicae 0 1 species 3118 964 2561 92645 species 1 0 Herbaspirillum frisingense genus 1294 846 1 1 2 0 Oxalobacter Oxalobacter formigenes 0 1 species 847 1293 0 17 no rank 17750 224471 316612 1736 genus Methylibium 2 0 23 1 0 1 Methylibium petroleiphilum 105560 1713 species 1 Thiomonas 2 0 19 genus 32012 1540 species 1521 926 Thiomonas intermedia 0 1 1602 212743 genus 2 0 86 Rhizobacter 1 0 1 Rhizobacter gummiphilus species 946333 1516 [Polyangium] brachysporum 0 1 species 413882 1629 2083 93681 genus Roseateles 192 2 0 1 0 1 Roseateles depolymerans 76731 1891 species 84 2 0 Rubrivivax 1 28067 2964 genus 2880 28068 species Rubrivivax gelatinosus 1 0 40 0 2 Paucibacter 1 318147 1515 genus 1475 2642959 no rank 0 1 Paucibacter sp. KCTC 42545 0 1 1768242 1475 species 1 0 2 191 Mitsuaria genus 2811 65047 0 1 2648776 2620 no rank 0 1 Mitsuaria sp. 7 2620 1658665 species 88 1870 genus 26 0 2 Leptothrix 1 Leptothrix cholodnii 1 0 species 1844 34029 356 0 42 Alcaligenaceae 1 64467 506 family Bordetella 17 0 805 1 27174 517 genus Bordetella bronchiseptica 1 0 3386 518 species species 463024 1666 Bordetella genomosp. 6 0 1 species 1416803 1565 1 0 Bordetella genomosp. 9 1875 463025 species 0 1 Bordetella bronchialis 1 0 Bordetella hinzii 1503 103855 species species 752 35814 Bordetella holmesii 1 0 1 0 Bordetella genomosp. 13 1440 463040 species species 1885 1331258 0 1 Bordetella pseudohinzii Bordetella avium 1 0 species 521 801 species 1259 463014 Bordetella flabilis 0 1 species 1619 123899 Bordetella trematum 1 0 0 1 Bordetella petrii species 1609 94624 519 1804 species 0 1 Bordetella parapertussis 2141 1416806 species Bordetella genomosp. 8 1 0 1 0 Bordetella pertussis species 1354 520 0 1 1710 2630031 no rank 0 1 Bordetella sp. H567 species 1697043 1710 6 0 607 Achromobacter 1 222 25514 genus 1 0 Achromobacter denitrificans species 32002 5526 0 1 2289 2626865 no rank 2289 1758194 species 0 1 Achromobacter sp. AONIH1 Achromobacter insolitus 0 1 2436 217204 species 4234 217203 species 0 1 Achromobacter spanius 1 0 Achromobacter xylosoxidans species 85698 10422 290425 1512 genus 3 0 31 Advenella 1 Advenella mimigardefordensis 0 1 species 302406 753 Advenella kashmirensis 0 1 species 310575 728 2219 359336 genus Castellaniella 0 2 56 1 75697 2163 species 0 1 Castellaniella defragrans 0 1 1100891 344 genus species 344 643674 0 1 Paenalcaligenes hominis 1 0 2 21 Alcaligenes genus 2093 507 511 2072 species Alcaligenes faecalis 0 1 827 305976 genus Pusillimonas 5 0 2 1 0 1 no rank 2640016 822 1 0 Pusillimonas sp. T7-7 1007105 822 species 0 2 genus 29574 795 29575 383 species 0 1 Taylorella equigenitalis 412 84590 species Taylorella asinigenitalis 0 1 1921582 2659 genus Orrella 18 0 2 1 species 2641 1851544 Orrella dioscoreae 0 1 508 90243 genus Oligella 1 0 2 1 1 0 Oligella urethralis species 507 90245 genus 1472344 466 1 Basilea 0 2 1 Basilea psittacipulmonis 1 0 species 465 1472345 family 80428 80864 1 Comamonadaceae 1369 0 59 genus 2798 52972 1 107 3 0 Polaromonas Polaromonas naphthalenivorans 0 1 species 1442 216465 0 1 2638319 1249 no rank Polaromonas sp. JS666 1 0 1249 296591 species 1 Ramlibacter 2 0 44 genus 3867 174951 species 94132 3823 Ramlibacter tataouinensis 0 1 genus 80865 11333 1 Delftia 403 0 5 species 2551 80866 Delftia acidovorans 0 1 1 0 Delftia tsuruhatensis 180282 2718 species 2613839 5661 no rank 0 2 Delftia sp. HK171 0 1 species 2703 1920191 0 1 Delftia sp. Cs1-4 2958 742013 species 1 Melaminivora 42 2 0 genus 1649468 1900 1 0 no rank 1858 2641902 0 1 Melaminivora sp. SC2-9 2109913 1858 species genus 4322 47420 1 25 0 4 Hydrogenophaga 3317 2610897 no rank 2 0 Hydrogenophaga sp. PBC 1 0 795665 1815 species Hydrogenophaga sp. RAC07 0 1 species 1502 1842537 Hydrogenophaga crassostreae 0 1 980 1763535 species 238749 1696 genus Diaphorobacter 0 2 11 1 species 1546149 1685 0 1 Diaphorobacter polyhydroxybutyrativorans 283 7804 genus 4 0 59 Comamonas 1 Comamonas serinivorans 0 1 species 1847 1082851 4178 285 species 1 0 Comamonas testosteroni 0 1 Comamonas kerstersii 225992 1720 species 11585 34072 genus Variovorax 284 5 0 1 5080 34073 species 1 0 Variovorax paradoxus species 436515 2386 Variovorax boronicumulans 0 1 no rank 3835 663243 0 2 1057 1795631 species 1 0 Variovorax sp. PAMC 28711 2126319 2778 species Variovorax sp. PMC12 0 1 9 0 674 Acidovorax 1 13873 12916 genus species 80869 1570 Acidovorax citrulli 1 0 1 0 Acidovorax sp. NA3 1409 553814 species 6985 2684926 no rank 0 4 Acidovorax sp. T1 1 0 1629 1858609 species 232721 1726 species 0 1 Acidovorax sp. JS42 Acidovorax sp. RAC01 0 1 1725 1842533 species 0 1 Acidovorax sp. KKS102 1905 358220 species 1728 80867 species Acidovorax avenae 0 1 721785 1507 species 1 0 Acidovorax ebreus genus 28065 5225 1 39 5 0 Rhodoferax Rhodoferax saidenbachensis 1 0 1484693 1402 species 81479 1021 species 0 1 Rhodoferax antarcticus 1 0 Rhodoferax ferrireducens 980 192843 species 1783 1842727 species Rhodoferax koreense 1 0 3 2 0 Verminephrobacter 1 364316 1549 genus Verminephrobacter eiseniae 1 0 species 1546 364317 genus 1436289 615 1 Candidatus Symbiobacter 2 0 4 species 1436290 611 0 1 Candidatus Symbiobacter mobilis 1 0 genus 2678886 1924 species 1924 2116657 Melaminivora sp. SC2-7 0 1 genus 1975 2490452 0 2 species 985 1458425 0 1 Comamonadaceae bacterium A1 990 1458426 species 1 0 Comamonadaceae bacterium B1 Limnohabitans 10 0 3 1 665874 1757 genus 2626134 1747 no rank 2 0 Limnohabitans sp. 103DPR2 1 0 835 1678129 species 1678128 912 species 1 0 Limnohabitans sp. 63ED37-2 1298 352450 genus Simplicispira 2 0 13 1 species 2109915 1285 1 0 Simplicispira sp. SC1-8 2409 201096 genus 0 2 20 Alicycliphilus 1 0 1 Alicycliphilus denitrificans species 179636 2389 genus 3129 219181 1 0 3 72 Ottowia 1235 2645081 no rank 1 0 Ottowia sp. oral taxon 894 1 0 1235 1658672 species 2109914 1822 species 0 1 Ottowia sp. KADR8-3 family 119060 108507 1 Burkholderiaceae 733 83 0 Paraburkholderia 301 0 12 1 13588 1822464 genus Paraburkholderia sprentiae 0 1 species 948107 1273 1 0 Paraburkholderia aromaticivorans 2026199 1328 species 134537 1293 species 1 0 Paraburkholderia fungorum Paraburkholderia xenovorans 1 0 species 36873 860 2615204 1096 no rank 0 1 0 1 Paraburkholderia sp. SOS3 1096 1926494 species species 252970 1016 Paraburkholderia phenoliruptrix 0 1 75105 1430 species Paraburkholderia caribensis 0 1 148447 1231 species 1 0 Paraburkholderia phymatum 169430 1551 species Paraburkholderia hospita 1 0 1213 311230 species Paraburkholderia terrae 0 1 species 261302 996 1 0 Paraburkholderia phytofirmans Burkholderia 41 0 2432 1 52089 32008 genus 25928 87882 species group 0 19 1207504 1091 species 1 0 Burkholderia pseudomultivorans 1 0 Burkholderia ubonensis 3100 101571 species species 1503055 388 Burkholderia territorii 0 1 species 60550 779 0 1 Burkholderia pyrrocinia species 488729 498 Burkholderia metallica 0 1 species 1181 60552 Burkholderia vietnamiensis 0 1 1 0 Burkholderia multivorans 87883 1898 species Burkholderia latens 0 1 species 488446 660 species 1286 482957 1 0 Burkholderia lata Burkholderia cepacia 0 1 4315 292 species species 1078 265293 [Pseudomonas] mesoacidophila 0 1 Burkholderia seminalis 1 0 species 622 488731 species 671 152500 1 0 Burkholderia dolosa species 488732 531 Burkholderia diffusa 1 0 1 0 Burkholderia stagnalis species 623 1503054 Burkholderia ambifaria 0 1 species 1302 152480 Burkholderia cenocepacia 0 1 species 4189 95486 1073 95485 species Burkholderia stabilis 1 0 1 0 Burkholderia contaminans species 643 488447 0 7 species group 111527 7212 species 342113 827 Burkholderia oklahomensis 1 0 13373 481 species 0 1 Burkholderia mallei 1637841 793 species 0 1 Burkholderia sp. MSMB0852 species 629 1637831 0 1 Burkholderia sp. MSMB617WGS 1 0 Burkholderia thailandensis species 57975 1712 Burkholderia pseudomallei 1 0 species 1958 28450 1 0 Burkholderia sp. MSMB0266 species 812 1637837 0 11 9875 2613784 no rank 1 0 Burkholderia sp. CCGE1003 964 640512 species 0 1 Burkholderia sp. YI23 species 1097668 1096 Burkholderia sp. CCGE1001 0 1 species 640510 828 0 1 Burkholderia sp. RPE67 species 1181 758796 0 1 Burkholderia sp. PAMC 26561 species 1795043 754 species 1042 1740163 1 0 Burkholderia sp. Bp7605 726 1468409 species 1 0 Burkholderia sp. 2002721687 792 1795874 species 1 0 Burkholderia sp. PAMC 28687 1 0 Burkholderia sp. KJ006 species 416344 696 Burkholderia sp. HB1 1 0 1678678 984 species species 1740162 812 0 1 Burkholderia sp. Bp5365 species 1677 41899 Burkholderia plantarii 1 0 1 0 Burkholderia glumae species 337 2543 2422 28095 species 1 0 Burkholderia gladioli Cupriavidus 685 9 0 1 17649 106589 genus 1 0 Cupriavidus pinatubonensis species 248026 1420 Cupriavidus necator 1 0 species 106590 3278 species 1383 82541 0 1 Cupriavidus gilardii Cupriavidus basilensis 0 1 68895 1925 species 2 0 2640874 4862 no rank Cupriavidus sp. USMAHM13 0 1 1389192 2305 species species 876364 2557 1 0 Cupriavidus sp. USMAA2-4 1 0 Cupriavidus sp. USMAA1020 367825 2538 species 119219 1558 species 1 0 Cupriavidus metallidurans 957 44013 genus 0 3 1835254 182 species 1 0 Polynucleobacter duraquae species 576611 551 0 1 Polynucleobacter asymbioticus Polynucleobacter necessarius 1 0 576610 224 species 48736 12566 genus Ralstonia 5 0 272 1 species 6443 305 Ralstonia solanacearum 1 0 Ralstonia insidiosa 1 0 1915 190721 species 1655 105219 species 1 0 Ralstonia mannitolilytica species 329 2281 1 0 Ralstonia pickettii 1 188 0 10 Pandoraea genus 93217 9257 93219 1102 species Pandoraea norimbergensis 1 0 species 777 573737 Pandoraea oxalativorans 1 0 93220 1012 species Pandoraea pnomenusa 1 0 1 0 Pandoraea pulmonicola species 93221 1110 753 93222 species 0 1 Pandoraea sputorum 1 0 Pandoraea thiooxydans species 977 445709 1165 656178 species Pandoraea vervacti 0 1 Pandoraea faecigallinarum 0 1 species 841 656179 1332 93218 species 0 1 Pandoraea apista 1827195 1266 genus 0 1 species 758793 1266 0 1 Burkholderia sp. RPE64 0 1 402 2571159 genus 1 0 Paraburkholderia rhizoxinica species 402 412963 0 10 119066 1660 no rank 0 2 23 Candidatus Accumulibacter 1 838 327159 genus 327160 815 species 0 1 Candidatus Accumulibacter phosphatis 93 1381133 genus 0 1 Candidatus Profftella armatura 0 1 669502 93 species 1 Kinetoplastibacterium 12 6 0 genus 715 33055 species 994695 78 1 0 Candidatus Kinetoplastibacterium galatii 0 1 Candidatus Kinetoplastibacterium oncopeltii 73 994696 species Kinetoplastibacterium blastocrithidii 0 1 species 233181 124 0 1 Candidatus Kinetoplastibacterium desouzaii 223 994692 species species 33056 205 0 1 Candidatus Kinetoplastibacterium crithidii 1 0 14 1301080 genus Candidatus Nasuia deltocephalinicola 0 1 14 1160784 species class 3262 1553900 1 Oligoflexia 9 0 9 5 0 28 Bdellovibrionales 1 213481 2200 order family 2172 213483 1 Bdellovibrionaceae 13 0 4 1 0 3 3 Bdellovibrio genus 958 2159 0 1 Bdellovibrio exovorus species 453816 176 1 0 Bdellovibrio bacteriovorus species 959 1980 1053 2024979 order 1 3 0 Bacteriovoracales 1 0 1 family 1652132 356 genus 1652133 356 0 1 species 356 97084 0 1 Halobacteriovorax marinus 0 1 696 263369 family genus 696 146784 1 0 696 960 species Bacteriovorax stolpii 0 1 class 1236 749405 1 1572 0 886 Gammaproteobacteria 3990 118884 no rank 12 0 1 7 0 2 Sedimenticola genus 731 349742 species 724 1543721 1 0 Sedimenticola thiotaurini 758 1608298 genus Thiolapillus 2 0 2 1 0 1 Thiolapillus brandeum species 1076588 756 clade 198346 250 0 1 species 250 186490 0 1 Candidatus Baumannia cicadellinicola genus 1524249 861 1 Pseudohongiella 1 2 0 1249552 860 species 1 0 Pseudohongiella spirulinae 0 2 655184 487 genus 1427364 265 species Candidatus Thioglobus singularis 1 0 222 1705394 species 1 0 Candidatus Thioglobus autotrophicus 3 0 clade 32036 903 1 0 Calyptogena okutanii thioautotrophic gill symbiont 177 410330 species Bathymodiolus septemdierum thioautotrophic gill symbiont 0 1 113267 409 species genus 317 1541743 0 1 0 1 Candidatus Ruthia magnifica species 317 386487 1 Immundisolibacterales 0 4 23 order 1934945 1403 1934946 1380 family 53 3 0 Immundisolibacteraceae 1 Immundisolibacter 10 2 0 1 1934947 1327 genus 1810504 1317 species Immundisolibacter cernigliae 0 1 order 11016 72273 1 32 0 2 Thiotrichales 1 Thiotrichaceae 5 4 0 family 1233 135617 0 2 2 Thioploca 1 40751 400 genus Thioploca ingrica 1 0 398 40754 species 1 0 828 1021 genus species 288004 828 Beggiatoa leptomitoformis 1 0 1 0 14 3 Francisellaceae family 6055 34064 0 1 genus 251 1869285 Allofrancisella guangzhouensis 1 0 594679 251 species genus 5801 262 1 21 0 12 Francisella Francisella sp. TX077310 1 0 species 573570 319 1542390 724 species 0 1 Francisella sp. CA97-1460 1 0 Francisella persica 954 379 species Francisella philomiragia 1 0 species 891 28110 549298 250 species 1 0 Francisella halioticida 573569 198 species 0 1 Francisella sp. TX077308 species 741 657445 0 1 Francisella noatunensis Francisella tularensis 0 1 species 263 1400 Francisella hispaniensis 0 1 species 622488 298 no rank 2610885 580 0 2 310 475375 species 0 1 Francisella sp. MA067296 1 0 Francisella sp. FSC1006 270 1547445 species family 135616 3726 1 Piscirickettsiaceae 0 13 103 0 1 genus 595 1237 Piscirickettsia salmonis 1 0 species 1238 595 1 Cycloclasticus 4 0 8 genus 34067 1095 337 1329899 species Cycloclasticus zancles 1 0 0 2 2621467 750 no rank 0 1 Cycloclasticus sp. P1 385025 311 species Cycloclasticus sp. PY97N 0 1 728003 439 species 0 1 427 28884 genus 1 0 Hydrogenovibrio crunogenus 427 39765 species Thiomicrospira 3 0 3 1 525 933 genus 92245 321 species Thiomicrospira aerophila 0 1 147268 201 species 0 1 Thiomicrospira cyclica 981 40222 genus 1 3 0 Methylophaga 1 species 754477 282 Methylophaga frappieri 1 0 Methylophaga nitratireducenticrescens 1 0 species 754476 698 892 1240482 order 0 4 1240483 892 family 0 4 genus 1335631 442 1 1 0 2 Frischella 441 1267021 species 1 0 Frischella perrara genus 450 1193503 1 Gilliamella 2 0 1 0 1 Gilliamella apicola 1196095 449 species 1 280 29 0 Aeromonadales order 135624 39604 1 400 0 28 Aeromonadaceae family 39324 84642 1 24 2 0 Zobellella genus 347533 2695 Zobellella denitrificans 0 1 2671 347534 species 945 225143 genus 2 3 0 Oceanisphaera 1 Oceanisphaera profunda 1 0 species 668 1416627 species 1903694 275 1 0 Oceanisphaera sp. AMac2203 10 2 0 Oceanimonas 1 2098 129577 genus 0 1 no rank 2088 2636315 Oceanimonas sp. GK1 0 1 species 2088 511062 1 Aeromonas 18 0 2308 genus 642 32144 1868 645 species 0 1 Aeromonas salmonicida Aeromonas veronii 0 1 3341 654 species 257493 9907 no rank 8 0 0 1 Aeromonas sp. CU5 1353 2033033 species 1758179 1459 species 0 1 Aeromonas sp. ASNIH5 species 1636607 874 1 0 Aeromonas sp. ASNIH2 1636606 1024 species 0 1 Aeromonas sp. ASNIH1 species 1920107 1128 Aeromonas sp. ASNIH7 0 1 Aeromonas sp. ASNIH3 1 0 species 1636608 906 2033032 1436 species 1 0 Aeromonas sp. CA23 1 0 Aeromonas sp. ASNIH4 species 1727 1636609 species 648 1064 Aeromonas caviae 0 1 1 0 Aeromonas dhakensis species 196024 1395 0 1 Aeromonas rivipollensis 948519 1478 species 651 1126 species Aeromonas media 0 1 1 0 Aeromonas schubertii species 652 1454 1406 558964 species 0 1 Aeromonas aquatica species 6797 644 Aeromonas hydrophila 1 0 1 0 2 3 Tolumonas genus 1042 43947 1 0 Tolumonas auensis 43948 1039 species order 25591 135613 1 422 0 52 Chromatiales 18 0 4 Halothiobacillaceae 1 1403 255526 family Halothiobacillus 35 0 3 1 1385 109262 genus 927 565 species Halothiobacillus neapolitanus 1 0 1 0 2636392 785 no rank Halothiobacillus sp. LS2 1 0 species 785 1860122 1302 449719 family Granulosicoccaceae 3 0 5 1 1 3 0 2 Granulosicoccus genus 1297 437504 0 1 Granulosicoccus antarcticus species 437505 1294 1738654 543 family Woeseiaceae 9 0 3 1 2 2 0 Woeseia 1 534 1738655 genus Woeseia oceani 1 0 species 532 1548547 family 1046 9352 1 Chromatiaceae 186 18 0 genus 309 1980513 1 Candidatus Nitrosoglobus 6 2 0 1 0 Candidatus Nitrosoglobus terrae species 1630141 303 0 2 15 Thiodictyon 1 53392 1682 genus 1667 1166950 species 1 0 Candidatus Thiodictyon syntrophicum 1249 82569 no rank 0 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 1 0 1249 1978339 species genus 13724 1551 1 Thiocystis 2 0 31 73141 1520 species 0 1 Thiocystis violascens Thioflavicoccus 0 2 12 1 156885 688 genus 1 0 Thioflavicoccus mobilis 676 80679 species Nitrosococcus 0 4 13 1 961 1227 genus 337 1229 species 1 0 Nitrosococcus oceani 473531 236 species 0 1 Nitrosococcus watsonii 0 1 Nitrosococcus halophilus species 133539 375 Marichromatium 32 2 0 1 1232 85076 genus 37487 1200 species Marichromatium purpuratum 0 1 9 0 2 Allochromatium 1 1494 85072 genus Allochromatium vinosum 0 1 species 1485 1049 family 1676141 903 1 Wenzhouxiangellaceae 26 0 3 1676142 877 genus 2 0 41 Wenzhouxiangella 1 species 1579979 836 0 1 Wenzhouxiangella marina 2 0 no rank 1354 451214 1 8 0 2 Thiohalobacter genus 1273155 1354 1346 585455 species Thiohalobacter thiocyanaticus 0 1 Ectothiorhodospiraceae 169 0 18 1 72276 10312 family 106633 5700 genus 0 6 110 Thioalkalivibrio 1 Thioalkalivibrio nitratireducens 0 1 species 900 186931 species 108010 712 0 1 Thioalkalivibrio paradoxus 0 1 no rank 1117 2621013 species 1117 396595 Thioalkalivibrio sp. K90mix 1 0 1033854 1646 species Thioalkalivibrio sulfidiphilus 1 0 species 106634 1215 Thioalkalivibrio versutus 1 0 1051 1153 genus 0 2 23 Ectothiorhodospira 1 1 0 1130 2684909 no rank 1130 1442136 species Ectothiorhodospira sp. BSL-9 1 0 Spiribacter 12 3 0 1 769 1335745 genus Spiribacter salinus 1 0 219 1335746 species species 1335757 538 Spiribacter curvatus 1 0 1765964 456 genus 2 0 2 Acidihalobacter 1 1 0 Acidihalobacter prosperus 454 160660 species 1204 133193 genus Alkalilimnicola 0 2 24 1 0 1 Alkalilimnicola ehrlichii 1180 351052 species Halorhodospira 10 2 0 1 861 85108 genus 1 0 Halorhodospira halophila 851 1053 species 1 Methylococcales 12 0 42 order 6883 135618 11 0 76 Methylococcaceae 1 403 6841 family 0 1 762296 676 genus 0 1 Methylovulum psychrotolerans species 1704499 676 416 3859 genus Methylomonas 41 5 0 1 0 1 Methylomonas denitrificans 1538553 807 species species 967 702114 Methylomonas koyamae 1 0 species 421 821 Methylomonas methanica 1 0 0 1 1223 2608980 no rank 1223 1727196 species 0 1 Methylomonas sp. DH-1 1 Methylomicrobium 0 2 1 genus 825 39773 0 1 Methylomicrobium alcaliphilum species 824 271065 genus 413 1405 1 11 0 2 Methylococcus species 1394 414 Methylococcus capsulatus 1 0 Pasteurellales 33 0 8 1 18086 135625 order 1 Pasteurellaceae 32 0 1291 family 712 18078 Actinobacillus 0 5 27 1 2807 713 genus Actinobacillus equuli 1 0 606 718 species 0 1 Actinobacillus suis 672 716 species 1 0 Actinobacillus pleuropneumoniae species 715 913 1 0 Actinobacillus succinogenes species 67854 589 1 2 0 1 Histophilus genus 214906 460 Histophilus somni 0 1 species 459 731 1 Bibersteinia 2 0 1 genus 476528 2089 0 1 Bibersteinia trehalosi 47735 2088 species 1638 416916 genus 3 0 14 Aggregatibacter 1 species 714 705 0 1 Aggregatibacter actinomycetemcomitans species 919 732 Aggregatibacter aphrophilus 0 1 667 155493 genus 0 2 1 Gallibacterium 1 Gallibacterium anatis 0 1 750 666 species genus 75984 1732 1 Mannheimia 0 4 31 2645054 513 no rank 0 1 1432056 513 species Mannheimia sp. USDA-ARS-USMARC-1261 0 1 1 0 Mannheimia haemolytica 75985 487 species species 701 85404 Mannheimia varigena 1 0 genus 953 2094023 1 2 0 4 Glaesserella species 949 738 1 0 Glaesserella parasuis genus 3991 724 1 Haemophilus 6 6 0 0 1 [Haemophilus] ducreyi 371 730 species Haemophilus influenzae 0 1 727 1522 species 0 1 368 2609962 no rank species 368 712310 1 0 Haemophilus sp. oral taxon 036 1357 729 species 0 1 Haemophilus parainfluenzae species 249188 367 0 1 Haemophilus pittmaniae 697331 660 genus 7 2 0 Basfia 1 species 157673 653 1 0 [Mannheimia] succiniciproducens 1790 745 genus 2 0 3 Pasteurella 1 Pasteurella dagmatis 0 1 species 754 468 species 1320 747 0 1 Pasteurella multocida 181711 72274 order 0 129 1025 Pseudomonadales 1 family 468 19062 1 42 0 81 Moraxellaceae 1 54 11 0 Psychrobacter genus 497 2748 0 1 Psychrobacter cryohalolentis 330922 185 species Psychrobacter urativorans 0 1 45610 352 species 1 0 Psychrobacter alimentarius species 298 261164 334543 333 species Psychrobacter arcticus 1 0 0 6 196806 1526 no rank 267 1028416 species Psychrobacter sp. DAB_AL43B 1 0 265 349106 species Psychrobacter sp. PRwf-1 0 1 248 571800 species Psychrobacter sp. G 0 1 183 1699624 species Psychrobacter sp. P11G5 0 1 1699622 168 species Psychrobacter sp. P2G3 0 1 0 1 Psychrobacter sp. AntiMn-1 species 1720344 395 1 Acinetobacter 176 25 0 genus 469 13929 species 709 756892 0 1 Acinetobacter indicus Acinetobacter johnsonii 0 1 495 40214 species 0 1 Acinetobacter radioresistens species 395 40216 0 1 437 202950 species 1 0 Acinetobacter sp. ADP1 strain 62977 437 487316 345 species 1 0 Acinetobacter soli 1324350 618 species 0 1 Acinetobacter equi 5 0 909768 4847 species group 48296 1242 species Acinetobacter pittii 0 1 species 471 933 Acinetobacter calcoaceticus 1 0 1794 470 species Acinetobacter baumannii 1 0 species 625 106654 Acinetobacter nosocomialis 1 0 Acinetobacter lactucae 1 0 253 1785128 species Acinetobacter schindleri 1 0 species 980 108981 1 0 Acinetobacter bereziniae species 106648 501 1 0 Acinetobacter junii 525 40215 species 2802 196816 no rank 7 0 2079596 222 species Acinetobacter sp. SWBY1 0 1 Acinetobacter sp. LoGeW2-3 1 0 species 1808001 476 0 1 Acinetobacter sp. TGL-Y2 319 1407071 species 716 1636603 species Acinetobacter sp. ACNIH1 0 1 1 0 Acinetobacter sp. ACNIH2 356 1758189 species 0 1 Acinetobacter sp. TTH0-4 342 1646498 species Acinetobacter sp. NCu2D-2 1 0 371 1608473 species Acinetobacter larvae 1 0 220 1789224 species species 1148157 418 Acinetobacter oleivorans 1 0 1 0 Acinetobacter haemolyticus species 29430 461 5 0 9 Moraxella 1 475 2304 genus species 384 480 Moraxella catarrhalis 0 1 1 0 Moraxella osloensis 34062 940 species Moraxella ovis 0 1 416 29433 species 0 1 Moraxella bovoculi 386891 555 species 1 0 86 1012 Pseudomonadaceae family 161624 135621 subfamily 351 4580 0 3 37 0 3 Azotobacter 1 4580 352 genus 0 1 Azotobacter chroococcum 2735 353 species 1808 354 species Azotobacter vinelandii 1 0 1 Pseudomonas 80 0 5582 genus 286 155542 136841 20543 species group 0 6 Pseudomonas citronellolis 1 0 species 3743 53408 287 6742 species Pseudomonas aeruginosa 1 0 0 1 Pseudomonas mendocina 300 5134 species 0 1 1663 1232139 species subgroup species 1663 1149133 0 1 Pseudomonas furukawaii 1 0 Pseudomonas alcaligenes 1605 43263 species 1 0 Pseudomonas resinovorans 1656 53412 species 65741 1860 species 1 0 Pseudomonas knackmussii 2 0 136842 8029 species group Pseudomonas fragi 1 0 species 296 1657 Pseudomonas chlororaphis 0 1 species 587753 6372 1 0 Pseudomonas silesiensis species 999 1853130 1788301 636 species Pseudomonas versuta 0 1 15675 136849 species group 0 8 species 1105 46257 Pseudomonas avellanae 1 0 36746 748 species 1 0 Pseudomonas cichorii 251701 2425 species Pseudomonas syringae group genomosp. 3 0 1 species subgroup 2924 251698 0 2 47877 1317 species Pseudomonas amygdali 0 1 29438 1607 species 1 0 Pseudomonas savastanoi 1263 33069 species 1 0 Pseudomonas viridiflava no rank 680 2775504 1 0 Pseudomonas sp. Lz4W 0 1 species 1206777 680 0 1 6530 251695 species subgroup 6530 317 species 1 0 Pseudomonas syringae 1670 237610 species 1 0 Pseudomonas psychrotolerans 0 1 Pseudomonas alcaliphila 1259 101564 species 0 30 no rank 31093 196821 1 0 Pseudomonas sp. JY-Q species 1015 1338689 species 1428 1649877 Pseudomonas sp. CCOS 191 0 1 1 0 Pseudomonas sp. FGI182 species 1259844 981 Pseudomonas sp. M30-35 0 1 species 1981174 424 species 1028989 1269 1 0 Pseudomonas sp. StFLB209 1611770 1192 species 0 1 Pseudomonas sp. MRSN12121 0 1 Pseudomonas sp. XWY-1 species 2069256 1029 Pseudomonas sp. MYb193 1 0 856 1827300 species 1283291 1465 species Pseudomonas sp. URMO17WK12:I11 1 0 1 0 Pseudomonas sp. PONIH3 species 1636610 1207 Pseudomonas sp. LH1G9 0 1 717 2083055 species Pseudomonas sp. UW4 1 0 1207075 800 species 1500686 1173 species 1 0 Pseudomonas sp. Os17 1659194 637 species Pseudomonas sp. GR 6-02 1 0 662 2049589 species Pseudomonas sp. HLS-6 0 1 0 1 Pseudomonas sp. SWI36 2083052 1227 species species 1500687 1001 Pseudomonas sp. St29 1 0 Pseudomonas sp. S-6-2 0 1 1054 1931241 species 1 0 Pseudomonas sp. TKP 771 1415630 species species 766 1930532 1 0 Pseudomonas sp. CC6-YY-74 Pseudomonas sp. VLB120 0 1 species 69328 1071 1856685 1464 species Pseudomonas sp. TCU-HL1 0 1 Pseudomonas sp. LG1D9 0 1 species 911 2083054 1898684 1519 species 0 1 Pseudomonas sp. LPH1 1 0 Pseudomonas sp. SWI44 924 2083053 species species 2067572 1006 Pseudomonas sp. NC02 0 1 Pseudomonas sp. SWI6 0 1 2083051 777 species Pseudomonas sp. DR 5-09 1 0 species 1534110 818 1 0 Pseudomonas sp. FDAARGOS_380 974 2018067 species 0 1 Pseudomonas sp. ATCC 13867 species 1294143 1955 136845 23267 species group 0 6 species 47885 1343 Pseudomonas oryzihabitans 1 0 species 70775 1176 Pseudomonas plecoglossicida 1 0 76759 3076 species Pseudomonas monteilii 1 0 Pseudomonas fulva 1 0 47880 1539 species Pseudomonas mosselii 1 0 2959 78327 species Pseudomonas putida 0 1 species 13174 303 Pseudomonas brassicacearum 1 0 species 930166 2250 1 0 Pseudomonas antarctica 219572 783 species species 2193 157782 Pseudomonas parafulva 0 1 1114 216142 species 1 0 Pseudomonas rhizosphaerae 198620 1773 species Pseudomonas koreensis 0 1 1 0 Pseudomonas alkylphenolica 1030 237609 species Pseudomonas cremoricolorata 1 0 species 811 157783 1 0 Pseudomonas frederiksbergensis 104087 2058 species 0 2 9365 136846 species group 0 1 578833 7929 species subgroup Pseudomonas stutzeri 0 1 7929 316 species 1436 74829 species Pseudomonas balearica 1 0 Pseudomonas lurida 1 0 species 244566 802 1199 1583341 species Pseudomonas cerasi 0 1 Pseudomonas entomophila 1 0 species 1008 312306 20543 136843 species group 0 9 species 200450 1016 1 0 Pseudomonas trivialis 0 1 Pseudomonas fluorescens 11594 294 species 200451 954 species 0 1 Pseudomonas poae 0 1 Pseudomonas veronii 76761 911 species 1 0 Pseudomonas orientalis species 76758 1020 species 1053 75612 1 0 Pseudomonas mandelii 47878 1521 species Pseudomonas azotoformans 0 1 0 1 Pseudomonas protegens 380021 1438 species 1036 47879 species 1 0 Pseudomonas corrugata genus 490 1849530 1 Oblitimonas 1 0 2 Oblitimonas alkaliphila 0 1 species 489 1697053 Legionellales 23 0 20 1 118969 6139 order 648 118968 family Coxiellaceae 0 5 1 1 0 1 193 134284 no rank species 1592897 193 Coxiella-like endosymbiont 0 1 1 Coxiella 3 0 1 genus 454 776 0 1 Coxiella burnetii 777 371 species no rank 82 2676648 0 1 0 1 Coxiella endosymbiont of Amblyomma americanum species 82 325775 family 444 5468 1 0 14 3 Legionellaceae 5280 445 genus 32 0 12 Legionella 1 0 1 Legionella endosymbiont of Polyplax serrata species 122 2005262 1 0 Legionella waltersii 66969 262 species 28087 485 species 0 1 Legionella sainthelensi Legionella longbeachae 1 0 450 244 species species 406 1867846 0 1 Legionella clemsonensis 449 523 species Legionella hackeliae 1 0 29423 366 species Legionella oakridgensis 1 0 species 252 45067 1 0 Legionella lansingensis 349 96230 species 1 0 Legionella fallonii 339 452 species 1 0 Legionella spiritensis species 1900 446 Legionella pneumophila 1 0 0 1 465 185 genus Tatlockia micdadei 1 0 species 451 185 63448 135614 order 556 0 53 Xanthomonadales 1 14 0 275 Rhodanobacteraceae 1 10651 1775411 family 242605 1061 genus Luteibacter 2 0 4 1 0 1 Luteibacter rhizovicinus species 1057 242606 1 Frateuria 18 2 0 genus 70411 1268 Frateuria aurantia 0 1 81475 1250 species 1 0 genus 680 2233801 1 0 Xanthomonadales bacterium D13 species 680 2021234 Dyella 4 0 62 1 231454 4693 genus Dyella jiangningensis 1 0 1379159 1219 species 1 0 Dyella thiooxydans species 445710 1676 0 1 Dyella japonica 231455 1736 species genus 1371 323413 1 2 0 5 Dokdonella 1366 323415 species Dokdonella koreensis 1 0 2 0 28 Rhodanobacter 1 75309 1303 genus 0 1 Rhodanobacter denitrificans species 1275 666685 1 Xanthomonadaceae 590 0 38 family 32033 52241 Stenotrophomonas 346 0 9 1 19703 40323 genus species group 9073 995085 0 1 species 9073 40324 Stenotrophomonas maltophilia 1 0 4 0 no rank 196198 5226 1904944 1369 species 0 1 Stenotrophomonas sp. LM091 1 0 Stenotrophomonas sp. MYb57 1827305 1222 species Stenotrophomonas sp. KCTC 12332 0 1 1793721 1269 species 1366 2005046 species 0 1 Stenotrophomonas sp. WZN-1 species 1317 83617 1 0 Stenotrophomonas nitritireducens 0 1 Stenotrophomonas rhizophila 1161 216778 species Stenotrophomonas acidaminiphila 0 1 species 2580 128780 genus 83614 643 1 Luteimonas 2 0 2 species 641 2006110 0 1 Luteimonas sp. 100111 1 Lysobacter 5 0 97 genus 7412 68 species 1990 435897 1 0 Lysobacter capsici 262324 1619 species 1 0 Lysobacter gummosus 1 0 Lysobacter enzymogenes species 1897 69 0 1 Lysobacter antibioticus species 1809 84531 83618 3477 genus 3 0 32 Pseudoxanthomonas 1 species 314722 2501 Pseudoxanthomonas suwonensis 1 0 species 944 415229 1 0 Pseudoxanthomonas spadix genus 19675 338 1 Xanthomonas 1373 17 0 Xanthomonas axonopodis 0 1 species 719 53413 Xanthomonas vasicola 0 1 56459 897 species 343 2009 species Xanthomonas translucens 1 0 Xanthomonas campestris 1 0 339 2492 species 1 0 Xanthomonas hortorum 56454 1075 species 533 456327 species Xanthomonas euvesicatoria 1 0 Xanthomonas albilineans 1 0 648 29447 species Xanthomonas vesicatoria 1 0 838 56460 species 1 0 Xanthomonas alfalfae species 366650 633 0 2 3015 643453 species group 366648 681 species Xanthomonas fuscans 0 1 0 1 Xanthomonas citri 2334 346 species 1 0 Xanthomonas perforans 1148 442694 species 1 0 Xanthomonas fragariae 48664 530 species 1407 347 species Xanthomonas oryzae 0 1 Xanthomonas phaseoli 0 1 1985254 573 species 0 1 Xanthomonas sacchari species 1785 56458 0 1 genus 2370 741 species 2371 741 0 1 Xylella fastidiosa Vibrionales 6 44 0 1 135623 31388 order 31382 641 family Vibrionaceae 144 43 0 1 1 Vibrio 468 0 30 genus 24825 662 1 0 Vibrio tritonius species 1435069 610 Vibrio breoganii 1 0 553239 650 species 1 0 Vibrio vulnificus 2110 672 species 1 0 Vibrio furnissii 29494 674 species species 676 1536 Vibrio fluvialis 1 0 Vibrio scophthalmi 1 0 species 45658 607 Vibrio nigripulchritudo 1 0 species 844 28173 0 1 Vibrio hyugaensis 1534743 402 species 0 1 Vibrio tapetis 494 52443 species Vibrio cholerae 1 0 915 666 species 2025808 475 species 1 0 Vibrio qinghaiensis 967 2614977 no rank 0 2 species 540 2014742 Vibrio sp. 2521-89 1 0 1116375 427 species Vibrio sp. EJY3 1 0 species 212663 276 0 1 Vibrio tasmaniensis 0 1 species group 369 1891919 0 1 Vibrio tubiashii species 29498 369 species 1422 190893 Vibrio coralliilyticus 1 0 Vibrio mimicus 1 0 1123 674 species 762 55601 species 1 0 Vibrio anguillarum 457 687 species 0 1 Vibrio gazogenes 0 10 717610 9664 species group 1 0 Vibrio rotiferianus species 343 190895 species 1288 680 1 0 Vibrio campbellii species 1810 670 Vibrio parahaemolyticus 0 1 Vibrio harveyi 0 1 species 665 669 species 962 691 0 1 Vibrio natriegens 2315253 1745 species subgroup 0 2 50719 1032 species Vibrio diabolicus 0 1 0 1 Vibrio antiquarius 150340 713 species 1 0 Vibrio jasicida 766224 329 species 663 1789 species 1 0 Vibrio alginolyticus 1 0 Vibrio owensii species 696485 733 genus 657 2907 1 25 4 0 Photobacterium Photobacterium profundum 0 1 74109 825 species 0 1 Photobacterium gaetbulicola 1176 1295392 species 38293 881 species 0 1 Photobacterium damselae 2 0 10 Grimontia 1 246861 1003 genus 0 1 Grimontia hollisae species 993 673 Aliivibrio 4 0 35 1 511678 1950 genus species 528 668 Aliivibrio fischeri 1 0 species 992 80852 1 0 Aliivibrio wodanis species 395 40269 0 1 Aliivibrio salmonicida genus 2042066 553 1 1 0 2 Paraphotobacterium Paraphotobacterium marinum 1 0 species 1755811 552 Acidiferrobacterales 0 6 59 1 1692040 2292 order 1 Acidiferrobacteraceae 45 5 0 family 1692041 2233 1232 1744881 genus 20 0 2 Sulfuricaulis 1 species 1620215 1212 Sulfuricaulis limicola 1 0 Sulfurifustis 2 0 58 1 1692042 956 genus Sulfurifustis variabilis 1 0 1675686 898 species order 500 135615 3 0 12 0 3 Cardiobacteriaceae 1 868 500 family 1 Dichelobacter 0 2 13 genus 488 869 475 870 species 1 0 Dichelobacter nodosus 50492 135622 order 106 0 105 Alteromonadales 1 6 0 3 Moritellaceae 1 267891 676 family genus 670 58050 1 Moritella 3 2 0 1 0 Moritella viscosa species 667 80854 Pseudoalteromonadaceae 0 25 34 1 267888 10635 family genus 10601 53246 1 248 24 0 Pseudoalteromonas species 43657 434 Pseudoalteromonas luteoviolacea 0 1 352 314281 species 0 1 Pseudoalteromonas tunicata Pseudoalteromonas phenolica 1 0 161398 315 species 0 1 Pseudoalteromonas marina 537 267375 species Pseudoalteromonas piratica 0 1 species 1348114 574 0 1 Pseudoalteromonas tetraodonis species 296 43659 Pseudoalteromonas espejiana 1 0 species 350 28107 Pseudoalteromonas rubra 0 1 species 395 43658 Pseudoalteromonas agarivorans 0 1 species 176102 339 Pseudoalteromonas nigrifaciens 1 0 species 212 28109 no rank 194690 2461 0 5 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1 0 species 762 1720343 0 1 Pseudoalteromonas sp. SM9913 species 224 234831 446 283699 species 0 1 Pseudoalteromonas sp. Bsw20308 571 1514074 species 0 1 Pseudoalteromonas sp. NC201 species 458 1761891 Pseudoalteromonas sp. 13-15 0 1 0 1 Pseudoalteromonas haloplanktis species 231 228 Pseudoalteromonas piscicida 0 1 684 43662 species 0 1 Pseudoalteromonas arctica 394751 208 species Pseudoalteromonas translucida 0 1 species 166935 230 152297 230 species Pseudoalteromonas issachenkonii 0 1 Pseudoalteromonas aliena 0 1 species 247523 1171 0 1 Pseudoalteromonas atlantica species 695 288 298657 639 species Pseudoalteromonas spongiae 1 0 family 72275 17777 1 0 30 92 Alteromonadaceae 1 4 2 0 Paraglaciecola genus 1621534 338 species 326544 334 1 0 Paraglaciecola psychrophila 1751872 961 genus 2 0 6 Lacimicrobium 1 Lacimicrobium alkaliphilum 0 1 1526571 955 species 1 Alteromonas 0 10 16 genus 5652 226 Alteromonas addita 1 0 species 670 287094 Alteromonas stellipolaris 1 0 598 233316 species 1 0 Alteromonas mediterranea species 314275 865 no rank 1239 2614992 0 3 2058133 370 species Alteromonas sp. MB-3u-76 1 0 Alteromonas sp. Mac1 0 1 1777491 522 species Alteromonas sp. RW2A1 1 0 347 1917158 species 28108 1337 species 1 0 Alteromonas macleodii Alteromonas naphthalenivorans 0 1 715451 468 species Alteromonas australica 1 0 species 589873 459 1 Agarivorans 6 0 2 genus 261825 581 680279 575 species Agarivorans gilvus 1 0 0 3 1 Glaciecola 1 89404 977 genus 0 1 no rank 2618684 501 species 983545 501 0 1 Glaciecola sp. 4H-3-7+YE-5 300231 475 species 1 0 Glaciecola nitratireducens genus 2742 9176 1 Marinobacter 10 0 65 Marinobacter salinus 1 0 species 719 1874317 species 1075 1420917 0 1 Marinobacter salarius Marinobacter psychrophilus 0 1 species 330734 707 1420916 1044 species 1 0 Marinobacter similis Marinobacter hydrocarbonoclasticus 1 0 species 1677 2743 Marinobacter adhaerens 0 1 991 1033846 species no rank 83889 2898 0 3 Marinobacter sp. BSs20148 1 0 490759 487 species species 1026 1671721 0 1 Marinobacter sp. CP1 species 1749259 1385 1 0 Marinobacter sp. LQ44 family 267889 3643 1 Colwelliaceae 0 9 8 1 0 2 1 Thalassotalea genus 488 1518149 0 1 Thalassotalea crassostreae species 487 1763536 1 6 0 4 Colwellia genus 3147 28228 564 1967665 species 0 1 Colwellia beringensis Colwellia psychrerythraea 1 0 28229 368 species 196834 2211 no rank 3 0 species 1151 58049 Colwellia sp. MT41 0 1 1816218 427 species 0 1 Colwellia sp. PAMC 20917 Colwellia sp. PAMC 21821 0 1 species 1816219 633 8 3 0 Ferrimonadaceae 1 1335 267892 family 1 4 2 0 Ferrimonas genus 1327 44011 44012 1323 species 0 1 Ferrimonas balearica 267893 1785 family Idiomarinaceae 0 6 5 1 1780 135575 genus 1 0 5 Idiomarina 1 1 0 Idiomarina loihiensis species 444 135577 0 2 no rank 2614829 1027 species 500 2055892 0 1 Idiomarina sp. X4 2100422 527 species Idiomarina sp. OT37-5b 1 0 1096243 308 species 1 0 Idiomarina piscisalsi 1 Psychromonadaceae 2 0 4 family 267894 1127 1125 67572 genus 3 3 0 Psychromonas 1 357794 658 species 0 1 Psychromonas ingrahamii 464 2614957 no rank 1 0 314282 464 species Psychromonas sp. CNPT3 0 1 1 Shewanellaceae 0 25 54 family 267890 13409 13355 22 genus 217 24 0 Shewanella 1 Shewanella amazonensis 0 1 species 991 60478 0 1 Shewanella oneidensis 70863 312 species 0 1 Shewanella pealeana species 70864 551 1 0 Shewanella putrefaciens species 24 640 0 1 Shewanella piezotolerans species 480 404011 471 2018305 species Shewanella bicestrii 1 0 1 0 Shewanella marisflavi 741 260364 species 60961 559 species 0 1 Shewanella woodyi Shewanella sediminis 1 0 species 271097 469 225848 467 species 1 0 Shewanella psychrophila Shewanella baltica 1 0 62322 1349 species species 981 359303 1 0 Shewanella loihica species 463 60217 0 1 Shewanella violacea Shewanella frigidimarina 0 1 56812 667 species 0 6 no rank 196818 2490 species 413 60480 Shewanella sp. MR-4 0 1 species 94122 489 1 0 Shewanella sp. ANA-3 60481 474 species Shewanella sp. MR-7 1 0 species 2029986 250 Shewanella sp. WE21 0 1 1 0 Shewanella sp. Pdp11 species 2059264 326 1 0 Shewanella sp. W3-18-1 351745 538 species 271098 646 species 0 1 Shewanella halifaxensis Shewanella denitrificans 1 0 species 413 192073 93973 448 species Shewanella japonica 1 0 5 0 4 Nevskiales 1 813 1775403 order 568386 5 family 0 1 Sinobacteraceae 803 2689614 family 0 2 6 0 2 Steroidobacter 1 469322 803 genus Steroidobacter denitrificans 0 1 species 797 465721 order 91347 254574 1 1079 245 0 Enterobacterales family 1903412 10146 1 Hafniaceae 51 14 0 genus 840 82982 1 8 2 0 Obesumbacterium 82983 832 species 0 1 Obesumbacterium proteus 1 40 0 3 Hafnia genus 568 2161 0 1 521 2621980 no rank species 1848580 521 Hafnia sp. CBA7124 0 1 1600 569 species Hafnia alvei 1 0 genus 7094 635 1 Edwardsiella 623 0 8 1 0 Edwardsiella piscicida 1263550 825 species species 920 93378 Edwardsiella hoshinae 0 1 Edwardsiella ictaluri 1 0 species 67780 877 2676541 1492 no rank 0 2 1578828 845 species Edwardsiella sp. EA181011 0 1 species 1650654 647 Edwardsiella sp. LADL05-105 0 1 636 1724 species Edwardsiella tarda 1 0 Edwardsiella anguillarum 0 1 633 1821960 species family 135126 543 1 Enterobacteriaceae 1174 118 0 1 5 0 87 Kosakonia genus 1330547 4461 0 1 Kosakonia cowanii species 1313 208223 species 283686 1348 Kosakonia radicincitans 0 1 species 497725 920 1 0 Kosakonia oryzae 793 1158459 species Kosakonia sacchari 0 1 579 971 genus Kluyvera 1 0 2 1 species 61648 970 Kluyvera intermedia 1 0 1 0 22 1464 Enterobacter genus 32257 547 species group 23471 354276 12 0 299767 870 species 0 1 Enterobacter ludwigii Enterobacter asburiae 1 0 species 61645 2319 0 1 Enterobacter kobei 208224 582 species 1 0 Enterobacter cloacae complex 'Hoffmann cluster IV' species 1812935 872 158836 6506 species Enterobacter hormaechei 3 0 3920 1 0 1 Enterobacter xiangfangensis subspecies 1296536 1038 1 0 Enterobacter cloacae complex 'Hoffmann cluster III' subspecies 1548 1812934 1 0 Enterobacter cancerogenus 69218 930 species 0 3 2303 2757714 no rank Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 0 species 779 2077137 1915310 786 species 1 0 Enterobacter cloacae complex sp. ECNIH7 0 1 Enterobacter cloacae complex bacterium species 738 2027919 9089 550 species Enterobacter cloacae 0 1 0 9 2608935 7322 no rank species 1344 1914861 0 1 Enterobacter sp. SA187 0 1 Enterobacter sp. R4-368 species 1166130 1136 Enterobacter sp. CRENT-193 1 0 species 1168 2051905 species 427 1560339 1 0 Enterobacter sp. E20 Enterobacter sp. HK169 1 0 species 1868135 329 Enterobacter sp. FY-07 0 1 1692238 1188 species species 399742 663 0 1 Enterobacter sp. 638 species 396 1977566 Enterobacter sp. Crenshaw 0 1 1 0 Enterobacter sp. ODB01 671 1827481 species 1 0 101 409304 genus Candidatus Ishikawaella capsulata 0 1 species 101 168169 genus 413496 7856 1 190 0 8 Cronobacter species 891 535744 Cronobacter universalis 1 0 413501 1248 species 0 1 Cronobacter muytjensii species 413502 997 1 0 Cronobacter turicensis species 1612 28141 1 0 Cronobacter sakazakii 1 0 Cronobacter dublinensis 413497 1039 species Cronobacter malonaticus 1 0 species 413503 876 1 0 Cronobacter condimenti species 1163710 1003 genus 160674 4077 1 48 0 3 Raoultella species 54291 2835 Raoultella ornithinolytica 1 0 species 1194 575 Raoultella planticola 1 0 no rank 191675 1937 18 0 0 18 clade 84563 1937 genus 1906660 96 0 1 species 1778264 96 Candidatus Mikella endobia 0 1 1906657 155 genus 0 1 0 1 Candidatus Doolittlea endobia species 1778262 155 0 1 87 199891 clade secondary endosymbiont of Trabutina mannipara 1 0 1835721 87 species genus 1682492 103 1 0 103 1410383 species 1 0 Candidatus Tachikawaea gelatinosa 146507 512 clade 0 3 secondary endosymbiont of Heteropsylla cubana 0 1 73 134287 species 0 1 secondary endosymbiont of Ctenarytaina eucalypti 1199245 142 species genus 568987 297 0 1 Candidatus Hamiltonella defensa 1 0 297 138072 species 7 0 756 84564 clade 1 0 7 1 Candidatus Blochmannia genus 756 203804 0 2 711328 184 no rank species 1505597 118 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1 0 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 0 species 1505596 66 1 0 Candidatus Blochmannia vafer 251535 252 species 0 1 Candidatus Blochmannia chromaiodes 112 251542 species 1 0 Candidatus Blochmannia pennsylvanicus 101534 109 species species 98 203907 0 1 Candidatus Blochmannia floridanus 2 0 5 Candidatus Hoaglandella 1 1906659 144 genus 0 1 Candidatus Hoaglandella endobia 1778263 139 species 1 1 0 2 Candidatus Gullanella genus 84 1906661 Candidatus Gullanella endobia 1 0 83 1070130 species 6479 590 genus 3 0 29 Salmonella 1 species 5540 28901 Salmonella enterica 0 1 Salmonella bongori 0 1 species 910 54736 genus 544 17893 1 Citrobacter 551 0 14 7 0 species group 1344959 9608 0 1 Citrobacter freundii complex sp. CFNIH2 853 2066049 species 604 2077149 species Citrobacter freundii complex sp. CFNIH9 1 0 1 0 Citrobacter freundii complex sp. CFNIH4 2077148 693 species Citrobacter freundii 0 1 3598 546 species 1829 67827 species Citrobacter werkmanii 1 0 species 428 2077147 Citrobacter freundii complex sp. CFNIH3 0 1 Citrobacter braakii 1 0 57706 1603 species 1 0 Citrobacter rodentium 1084 67825 species 1 0 Citrobacter amalonaticus 2647 35703 species 0 1 Citrobacter farmeri 67824 1003 species no rank 2644389 1725 0 2 0 1 Citrobacter sp. CFNIH10 991 1920110 species 1 0 Citrobacter sp. FDAARGOS_156 734 1702170 species 1275 545 species Citrobacter koseri 1 0 64 0 5 Escherichia 1 10376 561 genus 1 0 Escherichia albertii species 208962 1727 species 7223 562 0 1 Escherichia coli 838 1499973 species Escherichia marmotae 0 1 Escherichia fergusonii 1 0 564 524 species genus 3634 1330545 1 Lelliottia 37 4 0 0 1 Lelliottia jeotgali 816 1907578 species 0 1 Lelliottia nimipressuralis species 1132 69220 1 0 Lelliottia amnigena species 1649 61646 1 Leclercia 156 4 0 genus 83654 3092 2096 2627398 no rank 2 0 922 1920116 species 1 0 Leclercia sp. LSNIH3 1174 1920114 species Leclercia sp. LSNIH1 1 0 Leclercia adecarboxylata 0 1 species 840 83655 1 Pluralibacter 0 3 22 genus 4462 1330546 1 0 Pluralibacter gergoviae 61647 2868 species species 1572 1334193 1 0 [Enterobacter] lignolyticus 158483 3482 genus 15 2 0 Cedecea 1 158822 3467 species Cedecea neteri 1 0 1 0 genus 174 1048757 species 1048758 174 Candidatus Moranella endobia 0 1 36866 4646 no rank 0 5 species 893 1920109 0 1 Enterobacteriaceae bacterium ENNIH2 species 1005 1920128 Enterobacteriaceae bacterium ENNIH3 1 0 species 1039 2066051 1 0 Enterobacteriaceae bacterium ENNIH1 1 0 Plautia stali symbiont species 873 891974 species 836 693444 Enterobacteriaceae bacterium strain FGI 57 0 1 genus 1692 620 1 Shigella 0 4 68 0 1 no rank 2629414 559 0 1 Shigella sp. PAMC 28760 1813821 559 species 0 1 Shigella flexneri 623 422 species species 643 622 Shigella dysenteriae 1 0 0 1 1335483 887 genus 563 887 species 0 1 Shimwellia blattae Candidatus Riesia 1 2 0 1 401618 318 genus 0 1 Candidatus Riesia pediculicola species 317 401619 1 736 10 0 Klebsiella genus 25157 570 Klebsiella oxytoca 0 1 5209 571 species species 2705 244366 0 1 Klebsiella variicola 0 2 2608929 2870 no rank 1934254 1606 species Klebsiella sp. M5al 1 0 1264 1905288 species Klebsiella sp. LTGPAF-6F 1 0 1 0 Klebsiella pneumoniae species 573 6543 0 1 Klebsiella aerogenes species 2014 548 species 2111 1134687 0 1 Klebsiella michiganensis 1463165 1769 species Klebsiella quasipneumoniae 0 1 species 2026240 1200 0 1 Klebsiella quasivariicola 1903409 24423 family Erwiniaceae 59 0 27 1 714 82986 genus 0 2 13 Tatumella 1 1 0 Tatumella citrea species 53336 701 1 0 2 1 Buchnera genus 1579 32199 species 9 1578 Buchnera aphidicola 0 1 Erwinia 0 8 290 1 6120 551 genus Erwinia pyrifoliae 1 0 79967 644 species Erwinia gerundensis 1 0 species 1619313 950 species 338565 818 1 0 Erwinia tasmaniensis 0 1 Erwinia billingiae species 182337 1605 257 1922217 species Candidatus Erwinia sp. ErCipseudotaxifoliae 0 1 species 786 552 0 1 Erwinia amylovora 0 1 2622719 770 no rank 770 215689 species 0 1 Erwinia sp. Ejp617 2100764 2957 genus 0 2 0 1 Pantoea calida 665913 1587 species 0 1 Pantoea gaviniae 1370 665914 species genus 51228 355 0 1 51229 355 species Wigglesworthia glossinidia 1 0 1 Pantoea 11 0 406 genus 53335 12639 no rank 4473 2630326 0 3 1894 592316 species 0 1 Pantoea sp. At-9b Pantoea sp. PSNIH2 0 1 species 1484157 1550 species 1029 1484158 0 1 Pantoea sp. PSNIH1 Pantoea vagans 1 0 2123 470934 species 0 1 Candidatus Pantoea carbekii 1235990 114 species 1 0 Pantoea ananatis species 553 1161 1 0 1654067 2047 species group 2047 549 species Pantoea agglomerans 0 1 species 1076550 692 Pantoea rwandensis 0 1 0 1 Pantoea stewartii 660 66269 species 963 1891675 species Pantoea alhagi 0 1 1 Budviciaceae 0 3 2 family 1903416 666 1 0 2 4 Pragia genus 664 82984 1 0 Pragia fontium 660 82985 species 50096 1903411 family 0 39 195 Yersiniaceae 1 1 13 0 154 Yersinia genus 10618 629 species 708 28152 Yersinia kristensenii 1 0 Yersinia intermedia 0 1 species 631 453 1 0 Yersinia aldovae species 627 29483 Yersinia aleksiciae 0 1 species 678 263819 Yersinia frederiksenii 0 1 2231 29484 species species 29486 559 Yersinia ruckeri 1 0 3 0 species group 2083 1649845 663 632 species Yersinia pestis 0 1 1 0 Yersinia similis 367190 371 species 1049 633 species Yersinia pseudotuberculosis 1 0 1 0 Yersinia rohdei 438 29485 species 1 0 443 2653513 no rank 443 1839800 species Yersinia sp. FDAARGOS_228 0 1 0 1 Yersinia enterocolitica species 630 2244 929812 1215 genus 3 2 0 Gibbsiella 1 0 1 Gibbsiella quercinecans species 929813 1212 613 34185 genus 1565 16 0 Serratia 1 0 1 Serratia liquefaciens 614 1409 species species 2625 47917 Serratia fonticola 1 0 Serratia proteamaculans 1 0 species 1254 28151 Serratia rubidaea 1 0 61652 1596 species 0 8 no rank 11269 2647522 species 1890 2033438 0 1 Serratia sp. MYb239 species 1327989 1341 Serratia sp. FS14 0 1 Serratia sp. AS12 1 0 species 1328 768490 0 1 Serratia sp. SCBI species 488142 1440 species 1758196 1214 Serratia sp. SSNIH1 1 0 species 1597 671990 Serratia sp. FGI94 1 0 species 1327 768493 Serratia sp. AS13 1 0 species 1132 104623 0 1 Serratia sp. ATCC 39006 Serratia marcescens 1 0 species 6329 615 Serratia ficaria 0 1 species 1565 61651 Serratia plymuthica 1 0 species 6573 82996 38 1565532 genus 0 1 Rouxiella 1745211 626 genus Chania 2 0 8 1 Chania multitudinisentens 0 1 618 1639108 species 1 Rahnella 126 4 0 genus 3219 34037 Rahnella aquatilis 1 0 1070 34038 species 0 2 no rank 2635087 2023 1 0 Rouxiella sp. ERMR1:05 species 1805933 994 0 1 Rahnella sp. Y9602 741091 1029 species 1613 451511 no rank 0 2 Plesiomonas 33 2 0 1 702 1613 genus species 703 1580 Plesiomonas shigelloides 0 1 Pectobacteriaceae 68 0 20 1 20941 1903410 family Pectobacterium 190 6 0 1 122277 8485 genus species 2042057 1180 1 0 Pectobacterium polaris Pectobacterium carotovorum 1 0 species 554 3868 Pectobacterium atrosepticum 1 0 species 1092 29471 species 1010 55208 Pectobacterium wasabiae 0 1 species 1905730 1145 Pectobacterium parmentieri 0 1 5 0 52 Sodalis 1 2545 84565 genus species 63612 825 0 1 Sodalis glossinidius 1486991 795 species 0 1 Candidatus Sodalis pierantonius 1929246 73 species Sodalis endosymbiont of Henestaris halophilus 1 0 Sodalis praecaptivus 0 1 species 800 1239307 8479 204037 genus Dickeya 287 6 0 1 species 2440 1089444 1 0 Dickeya solani 1310 1778540 species 0 1 Dickeya fangzhongdai 204039 1401 species 1 0 Dickeya dianthicola species 204038 1230 Dickeya dadantii 0 1 204042 1811 species 0 1 Dickeya zeae genus 1364 71655 1 Brenneria 29 2 0 1109412 1335 species 0 1 Brenneria goodwinii 21 0 32 Morganellaceae 1 10484 1903414 family 1 0 genus 637 145 0 1 Arsenophonus symbiont of Lipoptena fortisetosa 634113 145 species genus 626 3260 1 6 0 104 Xenorhabdus Xenorhabdus nematophila 1 0 species 832 628 species 326 351679 Xenorhabdus hominickii 0 1 Xenorhabdus doucetiae 1 0 species 351671 584 species 40577 560 Xenorhabdus poinarii 0 1 0 1 Xenorhabdus bovienii species 854 40576 1 9 4 0 Photorhabdus genus 29487 1409 species 427 574560 Photorhabdus temperata 1 0 species 508 291112 1 0 Photorhabdus asymbiotica 1 0 Photorhabdus luminescens species 465 29488 genus 586 1939 1 Providencia 4 0 4 666 588 species 0 1 Providencia stuartii Providencia alcalifaciens 1 0 species 126385 691 0 1 Providencia rettgeri 578 587 species genus 583 1477 1 Proteus 10 0 3 998 584 species Proteus mirabilis 0 1 469 585 species 1 0 Proteus vulgaris 2222 581 genus 2 0 32 Morganella 1 1 0 Morganella morganii 2190 582 species order 1706369 11383 1 Cellvibrionales 28 0 103 1 0 11 46 Cellvibrionaceae family 5620 1706371 3 2 0 Teredinibacter 1 581 2425 genus 0 1 Teredinibacter turnerae 578 2426 species 1 Cellvibrio 4 0 8 genus 10 2857 1798 2624793 no rank 2 0 Cellvibrio sp. PSBB023 0 1 species 647 1945512 species 1987723 1151 0 1 Cellvibrio sp. PSBB006 1051 155077 species Cellvibrio japonicus 0 1 44 0 2 Simiduia 1 447467 1192 genus species 1148 447471 0 1 Simiduia agarivorans 2036021 552 genus 0 1 Agarilytica rhodophyticola 0 1 1737490 552 species 0 1 392 316625 genus 86304 392 species 1 0 Saccharophagus degradans 1164 1706375 family Spongiibacteraceae 7 0 24 1 Zhongshania 0 2 1 1 1434050 422 genus Zhongshania aliphaticivorans 1 0 1470434 421 species genus 264 630749 1 1 0 2 Spongiibacter no rank 263 2631504 0 1 Spongiibacter sp. IMCC21906 1 0 species 263 1620392 454 1084558 genus 1 2 0 Oceanicoccus 1 species 453 716816 1 0 Oceanicoccus sagamiensis 1 Microbulbiferaceae 12 5 0 family 2970 1706373 1 Microbulbifer 4 0 22 genus 2958 48073 0 1 Microbulbifer aggregans 1038 1769779 species 0 1 Microbulbifer agarilyticus 260552 877 species 1 0 Microbulbifer thermotolerans 1021 252514 species 1 Halieaceae 39 4 0 family 1706372 1526 genus 1487 1217416 1 3 0 24 Halioglobus species 930805 819 0 1 Halioglobus japonicus species 930806 644 Halioglobus pacificus 0 1 0 2 2606 33811 no rank 1511 1248727 species endosymbiont of unidentified scaly snail isolate Monju 1 0 species 1095 83406 gamma proteobacterium HdN1 1 0 Oceanospirillales 67 0 472 1 35022 135619 order 1037 224379 family Hahellaceae 3 3 0 1 1 14 2 0 Hahella genus 158481 1034 1 0 Hahella chejuensis 1020 158327 species 255527 1315 family 25 0 5 Saccharospirillaceae 1 genus 458 230494 1 Reinekea 0 2 39 1336806 419 species 1 0 Reinekea forsetii 1 19 2 0 Gynuella genus 1445504 832 0 1 Gynuella sunshinyii 1445505 813 species family 135620 4726 1 Oceanospirillaceae 77 0 12 187492 341 genus 2 0 2 Thalassolituus 1 Thalassolituus oleivorans 1 0 species 339 187493 188907 607 genus 1 0 Oleispira antarctica 0 1 species 607 188908 4 0 2 Marinomonas 1 1474 28253 genus 0 1 196814 632 no rank species 632 400668 Marinomonas sp. MWYL1 0 1 1 0 Marinomonas posidonica species 458 936476 382 119864 species 0 1 Marinomonas mediterranea 1 11 2 0 Marinobacterium genus 1638 48075 Marinobacterium aestuarii 1 0 1627 1821621 species Bacterioplanes 1 2 0 1 1537406 589 genus 1 0 Bacterioplanes sanyensis 588 1249553 species 1 435 0 30 Halomonadaceae family 20044 28256 404432 940 genus Salinicola 23 2 0 1 Salinicola tamaricis 1 0 species 1771309 917 1 269 0 15 Halomonas genus 13488 2745 Halomonas huangheensis 0 1 1014 1178482 species Halomonas campaniensis 0 1 species 213554 286 species 115561 1273 Halomonas hydrothermalis 1 0 no rank 6420 2609666 0 8 1 0 Halomonas sp. 'Soap Lake #6' species 1949203 672 Halomonas sp. KO116 0 1 species 1504981 824 Halomonas sp. GT 0 1 species 1971364 472 1 0 Halomonas sp. 'Soap Lake #7' 1962264 672 species species 1610576 714 Halomonas sp. R57-5 1 0 1098 2136172 species Halomonas sp. SF2003 0 1 Halomonas sp. GFAJ-1 1 0 1118153 664 species Halomonas sp. 1513 0 1 species 1304 1883416 species 881 507626 0 1 Halomonas chromatireducens 1564 475662 species 1 0 Halomonas beimenensis 0 1 Halomonas aestuarii 1781 1897729 species 271 114403 no rank 3 0 0 1 genus 235572 106 Candidatus Portiera aleyrodidarum 0 1 species 91844 106 102 1495768 genus 0 1 0 1 Candidatus Evansia muelleri species 1495769 102 1 0 114185 63 genus species 114186 63 1 0 Candidatus Carsonella ruddii genus 889 376488 1 Halotalea 26 2 0 Halotalea alkalilenta 1 0 species 863 376489 1 Chromohalobacter 8 2 0 genus 42054 689 0 1 Chromohalobacter salexigens 158080 681 species 0 3 16 Kushneria 1 504090 1839 genus 0 1 Kushneria marisflavi 904 157779 species 0 1 Kushneria konosiri species 919 698828 1 Cobetia 13 0 2 genus 1493 204286 Cobetia marina 0 1 28258 1480 species family 1920240 1535 1 Kangiellaceae 0 6 9 1526 261963 genus Kangiella 5 0 31 1 species 332 261964 Kangiella koreensis 0 1 1144748 304 species 0 1 Kangiella sediminilitoris 1 0 Kangiella geojedonensis 410 914150 species 0 1 Kangiella profundi species 1561924 449 0 2 28 Oleiphilaceae 1 191033 702 family genus 141450 674 0 1 674 141451 species 1 0 Oleiphilus messinensis 1 8 0 55 Alcanivoracaceae family 5191 224372 Alcanivorax 40 0 6 1 4565 59753 genus 1094342 926 species 1 0 Alcanivorax xenomutans Alcanivorax borkumensis 0 1 59754 502 species species 1306787 1532 Alcanivorax pacificus 1 0 285091 1071 species 0 1 Alcanivorax dieselolei no rank 2638842 494 0 1 1113728 494 species Alcanivorax sp. NBRC 101098 0 1 2025617 571 genus 0 1 Ketobacter alkanivorans 0 1 1917421 571 species 193084 68525 subphylum 0 196 1 0 72 124 Epsilonproteobacteria class 29547 63374 66 0 1457 Campylobacterales 1 213849 62300 order Campylobacteraceae 41 0 2362 1 72294 51980 family genus 42921 194 1 Campylobacter 26 0 366 species 1965231 502 1 0 Campylobacter pinnipediorum Campylobacter volucris 0 1 species 1031542 341 Campylobacter sputorum 0 1 206 518 species species 76517 705 1 0 Campylobacter hominis 3640 197 species Campylobacter jejuni 0 1 Campylobacter cuniculorum 0 1 species 374106 366 species 242 28898 0 1 Campylobacter helveticus species 29023 195 Campylobacter coli 0 1 species 196 747 1 0 Campylobacter fetus 1 0 Campylobacter concisus species 199 505 1 0 Campylobacter lanienae 75658 654 species species 824 411 Campylobacter gracilis 1 0 556 827 species Campylobacter ureolyticus 1 0 Campylobacter subantarcticus 1 0 species 228 497724 species 1244531 177 1 0 Campylobacter iguaniorum 516 198 species 1 0 Campylobacter hyointestinalis 201 1086 species 1 0 Campylobacter lari 0 1 Campylobacter curvus species 305 200 no rank 1010 2593542 4 0 Campylobacter sp. RM8964 1 0 1660074 257 species 256 1660076 species 0 1 Campylobacter sp. RM12175 species 1660073 188 1 0 Campylobacter sp. RM6137 1500960 309 species 1 0 Campylobacter sp. RM16704 0 1 Campylobacter avium 269 522485 species Campylobacter insulaenigrae 0 1 species 260714 282 Campylobacter peloridis 1 0 472 488546 species 2321108 4045 no rank 0 5 1 0 1166 2321207 no rank 1166 944547 species Arcobacter sp. L 1 0 0 1 genus 1088 2321187 species 1850254 1088 Arcobacter sp. LPB0137 0 1 59 3 0 Arcobacter 1 28196 1791 genus species 28199 786 0 1 Arcobacter nitrofigilis 0 1 Arcobacter butzleri 28197 946 species 2652 57665 genus Sulfurospirillum 11 9 0 1 362 366522 species Sulfurospirillum cavolei 0 1 species 194424 284 0 1 Sulfurospirillum halorespirans 65553 284 species Sulfurospirillum deleyianum 1 0 species 66821 392 Sulfurospirillum multivorans 1 0 no rank 2618290 1157 0 3 1986224 438 species 1 0 Sulfurospirillum sp. SL2-1 Sulfurospirillum sp. JPD-1 1 0 418 220622 species 1 0 Sulfurospirillum sp. UCH001 species 301 1581011 species 44674 162 Sulfurospirillum barnesii 1 0 72293 5066 family Helicobacteraceae 15 0 10 1 1 Helicobacter 5 0 12 genus 209 4822 Helicobacter hepaticus 1 0 species 420 32025 species 246 214 1 0 Helicobacter felis species 1591088 134 1 0 Helicobacter himalayensis Helicobacter acinonychis 1 0 212 252 species Helicobacter typhlonius 0 1 species 251 76936 species 138563 437 Helicobacter cetorum 0 1 468 37372 species Helicobacter bilis 1 0 210 1746 species 0 1 Helicobacter pylori 2593540 157 no rank 1 0 157 222136 species 0 1 Helicobacter sp. MIT 01-6242 species 440 217 0 1 Helicobacter mustelae species 213 266 Helicobacter cinaedi 1 0 Wolinella 0 2 2 1 234 843 genus 844 232 species 0 1 Wolinella succinogenes 0 4 family 2440 2771472 Sulfurovum 5 0 3 1 265570 1261 genus Sulfurovum lithotrophicum 0 1 species 607 206403 0 1 649 2646778 no rank species 649 387093 Sulfurovum sp. NBC37-1 1 0 269260 1179 genus 0 1 1 0 Nitratifractor salsuginis species 1179 269261 0 5 2771471 1357 family Sulfurimonas 0 3 1 1 824 202746 genus 0 1 Sulfurimonas denitrificans species 390 39766 Sulfurimonas autotrophica 1 0 433 202747 species genus 286130 533 1 Sulfuricurvum 1 0 2 species 532 148813 1 0 Sulfuricurvum kujiense 0 5 950 235899 order 224467 667 family 3 3 0 Nautiliaceae 1 24 0 2 Nautilia 1 664 191291 genus 244787 640 species Nautilia profundicola 0 1 0 2 family 2795691 283 2 0 1 Nitratiruptor 1 269258 283 genus 2624044 282 no rank 1 0 387092 282 species Nitratiruptor sp. SB155-2 0 1 1 370 0 124 Deltaproteobacteria class 28221 129710 11 0 9 Syntrophobacterales 1 3583 213462 order 1 7 0 1 Syntrophaceae family 213468 2454 genus 872 60892 1 6 2 0 Desulfobacca species 60893 866 Desulfobacca acetoxidans 1 0 0 2 3 Syntrophus 1 43773 840 genus species 837 316277 Syntrophus aciditrophicus 1 0 1 Desulfomonile 0 2 4 genus 741 2357 Desulfomonile tiedjei 0 1 737 2358 species 1 3 0 20 Syntrophobacteraceae family 1120 213465 29526 1100 genus 2 0 4 Syntrophobacter 1 Syntrophobacter fumaroxidans 1 0 species 1096 119484 order 47185 29 1 38 0 785 Myxococcales 0 26 80811 36108 suborder family 896 1524213 1 0 3 9 Vulgatibacteraceae 1524214 887 genus 0 2 19 Vulgatibacter 1 species 868 1391653 Vulgatibacter incomptus 1 0 family 17335 31 1 104 9 0 Myxococcaceae 1 Myxococcus 5 0 665 genus 32 11754 0 1 Myxococcus fulvus species 4755 33 species 34 1895 Myxococcus xanthus 1 0 0 1 Myxococcus hansupus species 1297742 2320 Myxococcus stipitatus 0 1 species 2119 83455 83461 5477 genus Corallococcus 0 3 172 1 Myxococcus macrosporus 0 1 2507 35 species 184914 2798 species Corallococcus coralloides 0 1 7314 1524215 family Anaeromyxobacteraceae 83 5 0 1 Anaeromyxobacter 4 0 159 1 161492 7231 genus 2620896 3694 no rank 2 0 species 1704 404589 Anaeromyxobacter sp. Fw109-5 0 1 1 0 Anaeromyxobacter sp. K 1990 447217 species 0 1 Anaeromyxobacter dehalogenans species 3378 161493 1 286 0 9 Archangiaceae family 39 10563 1 0 2 12 Archangium genus 2926 47 Archangium gephyra 0 1 species 48 2914 1 0 2 19 Melittangium genus 2647 44 species 2628 83453 0 1 Melittangium boletus genus 2591 42 1 2 0 33 Cystobacter 1 0 Cystobacter fuscus species 2558 43 2113 40 genus Stigmatella 23 2 0 1 species 41 2090 1 0 Stigmatella aurantiaca suborder 224462 2306 0 3 family 224464 2306 1 Kofleriaceae 0 3 10 genus 162027 2296 1 Haliangium 2 0 21 2275 80816 species 0 1 Haliangium ochraceum 8 0 suborder 80812 7986 family 1519 1055686 1 113 0 3 Sandaracinaceae 1406 1055688 genus Sandaracinus 2 0 43 1 1363 927083 species 0 1 Sandaracinus amylolyticus Polyangiaceae 53 5 0 1 49 6467 family Sorangium 2 0 147 1 39643 4937 genus 1 0 Sorangium cellulosum 4790 56 species 1 0 2 34 Chondromyces genus 1477 50 species 1443 52 Chondromyces crocatus 0 1 Desulfurellales 4 4 0 1 874 213113 order 1 0 3 5 Desulfurellaceae family 117942 870 0 1 genus 84404 381 381 84405 species Hippea maritima 1 0 1 0 genus 33001 484 0 1 Desulfurella acetivorans species 484 33002 order 453227 2430 1 19 0 4 Desulfarculales 3 0 19 Desulfarculaceae 1 2411 453228 family 1 Desulfarculus 0 2 26 genus 2392 453229 2366 453230 species 0 1 Desulfarculus baarsii 1 78 17 0 Desulfobacterales order 10788 213118 21 8 0 Desulfobacteraceae 1 5942 213119 family 0 1 genus 2295 1286 1286 2296 species Desulfobacterium autotrophicum 0 1 2529 896 genus Desulfococcus 0 3 9 1 1 0 Desulfococcus multivorans species 943 897 0 1 Desulfococcus oleovorans 1577 181663 species 1 1 2 0 Desulfobacula genus 28222 1078 species 28223 1077 Desulfobacula toluolica 0 1 218207 1028 genus 1 0 species 259354 1028 Desulfatibacillum alkenivorans 0 1 1 74 8 0 Desulfobulbaceae family 4768 213121 Desulfurivibrio 2 0 24 1 427922 1139 genus 1115 427923 species Desulfurivibrio alkaliphilus 0 1 618 109168 genus Desulfotalea 1 2 0 1 0 1 Desulfotalea psychrophila 617 84980 species genus 893 2088 1 2 2 0 Desulfobulbus 0 1 Desulfobulbus sp. ORNL species 1986146 2086 genus 53318 849 1 0 1 0 Desulfocapsa sulfexigens species 65555 849 213115 37245 order 25 0 529 Desulfovibrionales 1 1 18 0 358 Desulfovibrionaceae family 33092 194924 1 0 4 14 Pseudodesulfovibrio genus 6796 2035811 0 1 Pseudodesulfovibrio indicus 1716143 3077 species 1 0 Pseudodesulfovibrio profundus species 1407 57320 0 1 Pseudodesulfovibrio aespoeensis species 2298 182210 2 0 1 Lawsonia 1 261 41707 genus species 260 29546 Lawsonia intracellularis 0 1 0 1 genus 2582840 1708 species 1708 873 Desulfovibrio africanus 0 1 0 9 238 Desulfovibrio 1 872 22761 genus species 5319 881 1 0 Desulfovibrio vulgaris 4374 876 species 0 1 Desulfovibrio desulfuricans 0 1 Desulfovibrio fairfieldensis species 44742 2825 Desulfovibrio magneticus 1 0 2533 184917 species species 1578 58180 Desulfovibrio alaskensis 1 0 species 1725232 562 Candidatus Desulfovibrio trichonymphae 1 0 0 1 no rank 1383 2593640 1383 631220 species 0 1 Desulfovibrio sp. G11 Desulfovibrio piger 1 0 species 901 3949 0 1 genus 1208 2794998 species 880 1208 0 1 Desulfovibrio salexigens 1 Desulfomicrobiaceae 4 0 40 family 3036 213116 898 2996 genus 0 3 11 Desulfomicrobium 1 0 1 Desulfomicrobium baculatum species 899 1443 Desulfomicrobium orale 1 0 species 1542 132132 family 588 213117 1 2 0 1 Desulfohalobiaceae genus 587 45662 0 1 species 587 45663 1 0 Desulfohalobium retbaense 27235 69541 order Desulfuromonadales 342 0 24 1 1 0 9 179 Desulfuromonadaceae family 9221 213421 genus 5408 18 1 Pelobacter 23 5 0 0 1 Pelobacter acetylenicus species 1144 29542 19 1248 species Pelobacter carbinolicus 1 0 2620299 843 no rank 0 1 species 1842532 843 Pelobacter sp. SFB93 1 0 Pelobacter propionicus 0 1 2150 29543 species genus 3634 890 1 Desulfuromonas 20 3 0 0 1 no rank 1855 2614637 Desulfuromonas sp. DDH964 0 1 species 1855 1823759 1603606 1759 species Desulfuromonas soudanensis 1 0 213422 17672 family 14 0 186 Geobacteraceae 1 302 11 0 Geobacter 1 28231 15975 genus 1986 345632 species Geobacter pickeringii 1 0 0 1 Geobacter daltonii species 1203471 1134 species 1449 35554 Geobacter sulfurreducens 1 0 no rank 3674 2627627 0 2 Geobacter sp. M18 1 0 species 2070 443143 Geobacter sp. M21 1 0 species 443144 1604 0 1 Geobacter lovleyi species 313985 1631 1 0 Geobacter uraniireducens species 1091 351604 0 1 Geobacter metallireducens 28232 1118 species 1838 1340425 species 0 1 Geobacter anodireducens 1 0 Geobacter bemidjiensis 1752 225194 species Geoalkalibacter 2 2 0 1 392332 1511 genus species 1509 483547 0 1 Geoalkalibacter subterraneus class 580370 1824 1 Zetaproteobacteria 2 6 0 1 0 5 11 Mariprofundales order 580371 1822 1 0 4 10 Mariprofundaceae family 1811 580372 Mariprofundus 4 0 3 1 1801 377315 genus 0 1 Mariprofundus ferrinatatus species 741 1921087 species 1056 1921086 1 0 Mariprofundus aestuarium 1 Acidithiobacillia 1 7 0 class 2871 1807140 order 2870 225057 1 Acidithiobacillales 24 6 0 family 2846 225058 1 7 0 5 Acidithiobacillaceae genus 2839 119977 1 Acidithiobacillus 47 4 0 species 906 160808 Acidithiobacillus ferrivorans 0 1 Acidithiobacillus ferrooxidans 0 1 species 1087 920 species 33059 799 0 1 Acidithiobacillus caldus class 28211 411867 1 Alphaproteobacteria 1650 548 0 0 5 order 1417 54526 family 1655514 1171 4 0 0 2 genus 604 198251 species 300 198252 0 1 Candidatus Pelagibacter ubique no rank 2647897 304 1 0 Candidatus Pelagibacter sp. IMCC9063 0 1 species 1002672 304 2 0 no rank 567 1655516 alpha proteobacterium HIMB5 1 0 254 859653 species species 744985 313 alpha proteobacterium HIMB59 0 1 246 2045213 genus 0 1 species 246 1925548 0 1 Candidatus Fonsibacter ubiquis 76664 204455 order Rhodobacterales 0 87 536 1 76128 31989 family Rhodobacteraceae 1443 86 0 1 2 0 49 Pannonibacter 1 2551 227873 genus Pannonibacter phragmitetus 0 1 2502 121719 species 1 Jannaschia 0 2 1 genus 863 188905 no rank 862 2645469 1 0 Jannaschia sp. CCS1 1 0 862 290400 species 0 1 698 74030 genus 215743 698 species 1 0 Roseovarius mucosus Labrenzia 22 0 4 1 478070 3675 genus 0 1 Labrenzia aggregata 1164 187304 species no rank 2648686 2489 0 2 Labrenzia sp. VG12 1 0 species 2021862 1406 1083 1674922 species 0 1 Labrenzia sp. CP4 34008 4095 genus Rhodovulum 38 0 4 1 species 1846 35806 1 0 Rhodovulum sulfidophilum 0 2 no rank 2631432 2211 1 0 Rhodovulum sp. P5 1372 1564506 species 0 1 Rhodovulum sp. MB263 species 308754 839 genus 1887 1609958 0 1 no rank 1887 2643318 0 1 Confluentimicrobium sp. EMB200-NS6 0 1 1887 1609966 species genus 1988 92944 1 Ketogulonicigenium 9 3 0 92947 1079 species 1 0 Ketogulonicigenium robustum 92945 900 species 0 1 Ketogulonicigenium vulgare 1 2 0 10 Leisingera genus 1473 191028 Leisingera methylohalidivorans 0 1 species 1463 133924 0 1 genus 1306 2211641 Loktanella vestfoldensis 0 1 species 1306 245188 genus 747 299261 1 0 2 1 Tateyamaria 1 0 Tateyamaria omphalii species 299262 746 16 2 0 Marinovum 1 367771 1406 genus species 1390 42444 0 1 Marinovum algicola Thalassococcus 0 1 436357 7 genus 0 2 genus 263377 3188 species 1643 1229727 1 0 Thiobacimonas profunda no rank 1545 2640570 0 1 1545 1792508 species Yangia sp. CCB-MM3 0 1 Halocynthiibacter 2 0 2 1 242 1579315 genus Halocynthiibacter arcticus 1 0 species 240 1579316 1 2 0 7 Sagittula genus 1784 58842 0 1 no rank 2624628 1777 0 1 Sagittula sp. P11 2009329 1777 species genus 12099 265 1 Paracoccus 0 9 194 266 2042 species 0 1 Paracoccus denitrificans 0 1 no rank 973 246570 1529068 973 species Paracoccus sp. BM15 1 0 2065379 1406 species 0 1 Paracoccus sp. CBA4604 1 0 Paracoccus aminovorans species 1373 34004 Paracoccus zhejiangensis 1 0 species 1077935 1985 1945662 1173 species Paracoccus contaminans 1 0 1 0 Paracoccus yeei species 147645 2007 Paracoccus aminophilus 0 1 species 946 34003 genus 712 285107 0 1 species 712 1915078 0 1 Thioclava nitratireducens 1 6 0 2 Roseibacterium genus 159345 903 species 897 159346 1 0 Roseibacterium elongatum genus 1074 309512 1 Dinoroseobacter 2 0 1 species 215813 1073 Dinoroseobacter shibae 0 1 2 0 no rank 58840 1514 1 0 Rhodobacteraceae bacterium 1904441 737 species Rhodobacteraceae bacterium QY30 0 1 species 2033435 777 1 2 0 2 Defluviimonas genus 1097466 1776 species 1774 1335048 1 0 Defluviimonas alba 1 Celeribacter 13 5 0 genus 875170 3649 1758178 879 species Celeribacter ethanolicus 1 0 978 1208324 species 0 1 Celeribacter indicus 437 1397108 species 1 0 Celeribacter marinus Celeribacter manganoxidans 1 0 1342 1411902 species genus 53945 1038 1 2 4 0 Octadecabacter Octadecabacter antarcticus 0 1 1217908 476 species 1458307 257 species 0 1 Octadecabacter temperatus Octadecabacter arcticus 0 1 species 303 53946 1495 360528 genus 7 2 0 Pelagibaca 1 1488 1250539 species 1 0 Pelagibaca abyssi genus 2326 60136 1 Sulfitobacter 26 0 3 1099 196795 no rank 0 1 1 0 Sulfitobacter sp. AM1-D1 1099 1917485 species species 1402135 1201 Sulfitobacter pseudonitzschiae 1 0 genus 511 1284657 0 1 511 1284658 species Planktomarina temperata 1 0 4 245186 genus Loktanella 0 1 Rhodobacter 5 0 94 1 6202 1060 genus 0 2 196779 1939 no rank Rhodobacter sp. LPB0142 0 1 959 1850250 species Rhodobacter sp. CZR27 0 1 2033869 980 species species 1183 1061 0 1 Rhodobacter capsulatus Rhodobacter sphaeroides 0 1 2986 1063 species 1 Ruegeria 0 3 1 genus 97050 2612 Ruegeria pomeroyi 0 1 1673 89184 species no rank 938 2625375 0 1 Ruegeria sp. TM1040 1 0 938 292414 species genus 74032 989 1 0 Antarctobacter heliothermus 0 1 74033 989 species 0 2 1426 2433 genus Roseobacter litoralis 0 1 species 611 42443 species 815 2434 1 0 Roseobacter denitrificans 1 0 genus 1649279 1227 species 1227 379347 Ruegeria mobilis 0 1 2 0 1 Rhodobaca 1 119541 726 genus 1 0 Rhodobaca barguzinensis species 441209 725 302485 7927 genus Phaeobacter 50 5 0 1 Phaeobacter piscinae 0 1 species 2661 1580596 Phaeobacter gallaeciensis 0 1 60890 1956 species 0 1 Phaeobacter porticola 1844006 551 species species 221822 2709 Phaeobacter inhibens 1 0 0 1 565 1759396 genus 0 1 565 2622455 no rank 0 1 Marivivens sp. JLT3646 species 565 1920883 8 0 no rank 4299 82117 genus 1533 991903 1 Polymorphum 7 2 0 1 0 Polymorphum gilvum species 991904 1526 1632780 1524 genus 69 0 2 Phreatobacter 1 0 1 Phreatobacter sp. S-12 species 1455 1868589 0 2 clade 62654 480 767891 480 genus Candidatus Puniceispirillum 4 2 0 1 Candidatus Puniceispirillum marinum 1 0 species 476 767892 1 12 2 0 Micavibrio genus 762 213485 750 349221 species Micavibrio aeruginosavorus 1 0 order 2800060 1712 0 5 1 Hyphomonadaceae 5 0 30 family 69657 1712 1176 85 genus 0 3 5 Hyphomonas 1 Hyphomonas neptunium 1 0 species 81032 740 1 0 no rank 431 2630699 1906738 431 species Hyphomonas sp. Mor2 1 0 1 0 genus 2723 506 1 0 Hirschia baltica species 506 2724 1 208 0 1875 Rhizobiales order 172327 356 Rhodobiaceae 0 3 2 1 636 119043 family 256616 634 genus 34 0 2 Parvibaculum 1 600 256618 species 0 1 Parvibaculum lavamentivorans family 12141 45401 1 0 18 130 Hyphomicrobiaceae 1 0 4 32 Hyphomicrobium genus 2845 81 1427356 1199 species 0 1 Hyphomicrobium nitrativorans Hyphomicrobium denitrificans 0 1 species 53399 723 2619925 891 no rank 0 1 0 1 Hyphomicrobium sp. MC1 717785 891 species 0 1 genus 527 119044 Candidatus Filomicrobium marinum 0 1 species 1608628 527 1102 59282 genus 24 0 2 Blastochloris 1 1079 1078 species 0 1 Blastochloris viridis genus 29407 1454 1 Rhodoplanes 38 0 2 0 1 no rank 1416 2619116 species 674703 1416 Rhodoplanes sp. Z2-YC6860 1 0 genus 4510 46913 1 0 4 177 Devosia no rank 196773 4333 0 3 1 0 Devosia sp. A16 1736 1736675 species 0 1 Devosia sp. I507 1095 2083786 species 1643450 1502 species Devosia sp. H5989 0 1 0 2 9 Pelagibacterium 1 1082930 695 genus 0 1 Pelagibacterium halotolerans species 531813 686 10 0 2 Rhodomicrobium 1 878 1068 genus species 1069 868 0 1 Rhodomicrobium vannielii 0 6 2849 119042 no rank genus 879 1734920 1 0 2 29 Pseudorhodoplanes 1235591 850 species Pseudorhodoplanes sinuspersici 1 0 genus 1484898 962 1 Methyloceanibacter 0 2 12 species 950 1384459 Methyloceanibacter caenitepidi 0 1 genus 1008 1572860 1 Hartmannibacter 12 2 0 1482074 996 species 1 0 Hartmannibacter diazotrophicus family 5936 255475 1 Aurantimonadaceae 7 0 23 4854 293088 genus 100 4 0 Martelella 1 Martelella endophytica 1 0 1486262 1570 species 1 0 Martelella mediterranea 1568 293089 species 0 1 no rank 2629616 1616 0 1 Martelella sp. AD-3 1616 686597 species 11 2 0 Aureimonas 1 1059 414371 genus 0 1 no rank 2615206 1048 Aureimonas sp. AU20 1 0 1349819 1048 species family 335928 5194 1 33 0 7 Xanthobacteraceae 152053 1557 genus Starkeya 104 0 2 1 1 0 Starkeya novella 921 1453 species 15 0 2 Xanthobacter 1 279 1787 genus species 280 1772 1 0 Xanthobacter autotrophicus 6 1817 genus Azorhizobium 2 0 27 1 Azorhizobium caulinodans 0 1 7 1790 species 4980 772 family Bartonellaceae 20 0 18 1 4960 773 genus 63 17 0 Bartonella 1 species 1381 1686310 Bartonella apis 0 1 388640 204 species 1 0 Bartonella australis 1 0 Bartonella henselae species 163 38323 1 0 Bartonella bacilliformis 774 269 species 0 1 Bartonella tribocorum 201 85701 species species 178 33045 0 1 Bartonella grahamii species 1318743 188 1 0 Bartonella ancashensis 510 803 species Bartonella quintana 0 1 258 33047 species 1 0 Bartonella vinsonii 1 0 Bartonella clarridgeiae species 265 56426 no rank 2645622 1280 0 6 1933904 173 species 1 0 Bartonella sp. WD16.2 0 1 Bartonella sp. JB63 species 268 1933907 201 1933912 species Bartonella sp. Raccoon60 0 1 184 515256 species 1 0 Bartonella sp. 1-1C 1 0 Bartonella sp. A1379B 184 1933910 species Bartonella sp. JB15 0 1 1933906 270 species 0 4 61 Chelatococcaceae 1 2036754 3050 family 105 0 3 Chelatococcus 1 2989 28209 genus Chelatococcus daeguensis 1 0 species 1501 444444 no rank 1383 2638111 0 1 Chelatococcus sp. CO-6 0 1 species 1383 1702325 Phyllobacteriaceae 136 0 20 1 69277 18420 family genus 864 245876 1 15 2 0 Nitratireductor species 849 472175 1 0 Nitratireductor basaltis 1994 31988 genus Aminobacter 27 2 0 1 species 1967 83263 Aminobacter aminovorans 0 1 Mesorhizobium 9 0 351 1 68287 12209 genus 536018 1416 species Mesorhizobium australicum 1 0 species 1442 381 Mesorhizobium loti 1 0 0 1 Mesorhizobium amorphae species 71433 1901 Mesorhizobium opportunistum 1 0 species 1673 593909 Mesorhizobium japonicum 0 1 2066070 1396 species 39645 1915 species 0 1 Mesorhizobium ciceri 0 1 1271 325217 no rank species 1271 278153 Mesorhizobium sp. WSM1497 0 1 Mesorhizobium sp. B7 1 0 1670800 844 species 1 Chelativorans 0 2 16 genus 1557 449972 0 1 2643807 1541 no rank Chelativorans sp. BNC1 1 0 species 266779 1541 28100 788 genus Phyllobacterium 9 0 2 1 779 1867719 species 0 1 Phyllobacterium zundukense 274591 872 genus 4 0 2 Hoeflea 1 868 2614931 no rank 0 1 1 0 Hoeflea sp. IMCC20628 1620421 868 species Beijerinckiaceae 1 5 0 1 45404 1478 family genus 532 625 1 2 2 0 Beijerinckia Beijerinckia indica 1 0 533 623 species genus 120652 852 1 Methylocella 8 0 2 species 844 199596 1 0 Methylocella silvestris Bradyrhizobiaceae 26 0 582 1 41294 32958 family genus 374 17634 1 534 0 11 Bradyrhizobium 1274631 960 species Bradyrhizobium icense 0 1 1724 44255 species 0 1 Bradyrhizobium oligotrophicum 2631580 9072 no rank 0 6 1437 115808 species Bradyrhizobium sp. ORS 285 0 1 1431 1223566 species Bradyrhizobium sp. CCGE-LA001 1 0 species 1315 114615 1 0 Bradyrhizobium sp. ORS 278 species 288000 1707 1 0 Bradyrhizobium sp. BTAi1 1485 376 species 0 1 Bradyrhizobium sp. species 2057741 1697 1 0 Bradyrhizobium sp. SK17 Bradyrhizobium diazoefficiens 0 1 2811 1355477 species 2533 375 species 1 0 Bradyrhizobium japonicum 63 0 2 Oligotropha 1 40136 792 genus Oligotropha carboxidovorans 1 0 729 40137 species genus 5436 85413 1 0 5 95 Bosea no rank 3896 2653178 0 3 0 1 Bosea sp. PAMC 26642 species 1792307 1081 Bosea sp. RAC05 0 1 1842539 1292 species Bosea sp. AS-1 1 0 2015316 1523 species 1526658 1445 species Bosea vaviloviae 1 0 1 90 2 0 Rhodopseudomonas genus 1073 6778 6688 1076 species Rhodopseudomonas palustris 1 0 1 Nitrobacter 5 0 3 genus 911 1119 species 913 428 Nitrobacter winogradskyi 1 0 Nitrobacter hamburgensis 1 0 686 912 species 617 1649510 genus Variibacter 101 0 2 1 species 1333996 516 1 0 Variibacter gotjawalensis 1 Methylocystaceae 2 6 0 family 31993 1909 425 979 genus 0 2 39 Methylosinus 1 0 1 Methylosinus trichosporium 426 940 species Methylocystis 3 0 19 1 133 928 genus 365 2625913 no rank 0 1 Methylocystis sp. SC2 1 0 species 365 187303 Methylocystis bryophila 1 0 544 655015 species 1 Brucellaceae 93 0 20 family 118882 7031 1 Ochrobactrum 55 0 5 genus 4312 528 1156 571256 species Ochrobactrum pituitosum 1 0 1172 419475 species 0 1 Ochrobactrum pseudogrignonense 1162 529 species Ochrobactrum anthropi 0 1 Ochrobactrum sp. A44 1 0 767 271865 species 2626 234 genus Brucella 1038 0 14 1 0 1 Brucella ceti species 120577 177 Brucella vulpis 1 0 species 108 981386 1 0 Brucella melitensis species 69 29459 29461 119 species Brucella suis 0 1 235 42 species 0 1 Brucella abortus 1 0 Brucella microti 56 444163 species no rank 685 2632610 0 4 1891098 8 species 1 0 Brucella sp. 2002734562 species 1844051 162 Brucella sp. 09RB8910 1 0 Brucella sp. 09RB8471 0 1 species 1149952 281 Brucella sp. 141012304 0 1 species 1885919 234 0 1 Brucella canis 131 36855 species Brucella pinnipedialis 0 1 species 154 120576 species 236 47 1 0 Brucella ovis 18841 119045 family Methylobacteriaceae 15 0 123 1 576 9 0 Methylobacterium 1 10513 407 genus 2615210 3822 no rank 3 0 Methylobacterium sp. 4-46 0 1 species 426117 1164 species 1394 1479019 0 1 Methylobacterium sp. C1 1 0 Methylobacterium sp. AMS5 1264 925818 species species 950 114616 1 0 Methylobacterium nodulans 270351 1533 species 0 1 Methylobacterium aquaticum species 1067 418223 1 0 Methylobacterium phyllosphaerae species 991 334852 Methylobacterium oryzae 0 1 1 0 Methylobacterium radiotolerans 31998 1574 species genus 6872 2282523 3 0 4044 408 species Methylobacterium extorquens 0 1 species 223967 1747 Methylobacterium populi 1 0 Methylobacterium zatmanii 1 0 species 1081 29429 1 Microvirga 33 0 2 genus 186650 1333 Microvirga ossetica 1 0 1300 1882682 species 82115 55029 family 582 0 52 Rhizobiaceae 1 0 33 no rank 39894 227290 1 201 7 0 Agrobacterium genus 11110 357 1 0 Agrobacterium vitis species 373 1186 1 0 Agrobacterium rhizogenes 359 1801 species 0 2 no rank 1934 2632611 Agrobacterium sp. RAC06 1 0 species 1842536 847 1087 861208 species 0 1 Agrobacterium sp. H13-3 0 2 species group 1183400 5988 species 1648 1176649 1 0 Agrobacterium fabrum 358 4340 species 1 0 Agrobacterium tumefaciens 2076 1525371 genus Neorhizobium 7 2 0 1 Neorhizobium galegae 0 1 2069 399 species 24 0 1876 Rhizobium 1 26708 379 genus 3052 29449 species 0 1 Rhizobium etli 0 18 2613769 10442 no rank 1703969 1111 species Rhizobium sp. N324 1 0 Rhizobium sp. IE4771 1 0 species 558 1301032 1 0 Rhizobium sp. 10195 862 2028343 species 783 1981173 species 1 0 Rhizobium sp. NXC14 1 0 Rhizobium sp. NT-26 species 1125847 769 Rhizobium sp. N1314 1 0 1703961 137 species Rhizobium sp. S41 0 1 species 715 1869170 Rhizobium sp. ACO-34A 1 0 1303 1571470 species species 137 1703966 1 0 Rhizobium sp. N731 species 1914541 710 1 0 Rhizobium sp. Y9 Rhizobium sp. CIAT894 1 0 2020312 1155 species species 1703962 5 Rhizobium sp. N1341 1 0 Rhizobium sp. Kim5 0 1 538 2020311 species 1703960 3 species 1 0 Rhizobium sp. N113 424182 618 species 1 0 Rhizobium sp. IRBG74 species 2 1703967 0 1 Rhizobium sp. N741 1 0 Rhizobium sp. NXC24 species 2048897 890 1 0 Rhizobium sp. TAL182 2020313 146 species species 6416 384 1 0 Rhizobium leguminosarum 0 1 Rhizobium phaseoli 2378 396 species Rhizobium tropici 0 1 species 398 1120 Rhizobium gallicum 1 0 species 1424 56730 1 0 6 Liberibacter 1 34019 993 genus species 186 1273132 1 0 Liberibacter crescens 309868 150 species 1 0 Candidatus Liberibacter americanus Candidatus Liberibacter africanus 0 1 34020 315 species species 296 556287 Candidatus Liberibacter solanacearum 0 1 Candidatus Liberibacter asiaticus 1 0 45 34021 species 0 10 227292 11339 no rank genus 9282 28105 1 Sinorhizobium 0 7 145 382 2045 species 0 1 Sinorhizobium meliloti 1 0 Sinorhizobium medicae species 110321 681 0 2 no rank 2613772 2387 1842534 1364 species 0 1 Sinorhizobium sp. RAC02 Sinorhizobium sp. CCBAU 05631 1 0 1023 794846 species species 1315 194963 Sinorhizobium americanum 0 1 0 1 663276 2709 species group Sinorhizobium fredii 1 0 2709 380 species 47 3 0 Ensifer 1 2057 106591 genus 0 1 Ensifer sojae 716925 862 species 0 1 Ensifer adhaerens species 1148 106592 0 2 51 Shinella 1 323620 2221 genus 2643062 2170 no rank 0 1 Shinella sp. HZN7 1 0 species 2170 879274 order 1191478 575 1 Magnetococcales 0 3 2 family 573 1191479 0 2 genus 162171 573 1 0 2 2 Magnetococcus Magnetococcus marinus 0 1 571 1124597 species 204441 64763 order 0 64 795 Rhodospirillales 1 family 36995 41295 1 Rhodospirillaceae 555 30 0 Magnetospirillum 5 0 144 1 13134 8102 genus 55518 2108 species Magnetospirillum gryphiswaldense 0 1 Magnetospirillum magneticum 0 1 species 1819 84159 0 2 no rank 4031 2617991 1663591 2043 species 0 1 Magnetospirillum sp. XM-1 Magnetospirillum sp. ME-1 0 1 species 1988 1639348 2011 1543704 genus 13 2 0 Niveispirillum 1 0 1 Niveispirillum cyanobacteriorum species 1998 1612173 Haematospirillum 2 0 10 1 1804663 328 genus species 318 1549855 Haematospirillum jordaniae 0 1 1 Pararhodospirillum 22 0 2 genus 1612157 1096 species 1084 1074 Pararhodospirillum photometricum 0 1 genus 1263978 289 0 1 Candidatus Endolissoclinum faulkneri 0 1 1263979 289 species 1 0 3 11 Thalassospira genus 1967 168934 1065 2048283 species Thalassospira sp. CSC3H3 1 0 891 220697 species 1 0 Thalassospira xiamenensis 1988 171436 genus Tistrella 2 0 32 1 species 171437 1956 Tistrella mobilis 1 0 Nitrospirillum 9 0 2 1 1543705 3032 genus Nitrospirillum amazonense 1 0 species 28077 3023 2 0 4 Magnetospira 1 1182780 535 genus 1 0 no rank 2685734 531 Magnetospira sp. QH-2 1 0 species 1288970 531 genus 191 13925 1 Azospirillum 420 0 5 528244 3186 species 1 0 Azospirillum thiophilum Azospirillum brasilense 1 0 species 4085 192 1226968 1269 species Azospirillum humicireducens 1 0 species 4965 193 Azospirillum lipoferum 1 0 1081 3167 genus Rhodospirillum 0 3 48 1 0 1 Rhodospirillum rubrum species 1085 1328 species 1791 34018 Rhodospirillum centenum 1 0 26973 433 family 33 0 362 Acetobacteraceae 1 Neoasaia 8 2 0 1 759 320496 genus 1 0 Neoasaia chiangmaiensis species 320497 751 1 Gluconobacter 3 0 12 genus 2562 441 species 1637 442 Gluconobacter oxydans 0 1 Gluconobacter albidus 0 1 species 913 318683 genus 522 1658 1 Acidiphilium 89 0 3 Acidiphilium cryptum 0 1 749 524 species 0 1 Acidiphilium multivorum 820 62140 species genus 506 91914 0 1 species 506 91915 Asaia bogorensis 1 0 Roseomonas 0 3 113 1 125216 4047 genus 0 1 no rank 1879 2617492 1 0 Roseomonas sp. FDAARGOS_362 species 2018065 1879 Roseomonas gilardii 1 0 species 257708 2055 5 0 170 Komagataeibacter 1 4594 1434011 genus 0 1 Komagataeibacter xylinus species 1971 28448 1177712 831 species Komagataeibacter medellinensis 1 0 1 0 Komagataeibacter europaeus species 33995 719 265960 903 species 0 1 Komagataeibacter nataicola genus 1602345 757 1 Parasaccharibacter 1 2 0 0 1 Parasaccharibacter apium 756 1510841 species genus 153497 908 0 1 species 908 153496 Kozakia baliensis 1 0 1 Gluconacetobacter 29 2 0 genus 1231 89583 33996 1202 species Gluconacetobacter diazotrophicus 0 1 364409 1899 genus 57 2 0 Granulibacter 1 Granulibacter bethesdensis 0 1 species 1842 364410 1 Acetobacter 0 8 129 genus 434 7690 696 65959 species 1 0 Acetobacter pomorum 1 0 Acetobacter oryzifermentans 706 1633874 species 1 0 Acetobacter persici 711 1076596 species Acetobacter pasteurianus 0 1 438 2196 species species 104102 1267 1 0 Acetobacter tropicalis species 1104 446692 0 1 Acetobacter senegalensis subgenus 151157 881 1 0 881 435 species 0 1 Acetobacter aceti Sphingomonadales 82 0 473 1 60731 204457 order 226 22 0 Erythrobacteraceae 1 335929 13120 family 862 2800685 genus 0 1 Altererythrobacter marensis 0 1 862 543877 species genus 361177 1646 1 64 4 0 Altererythrobacter 0 1 Altererythrobacter ishigakiensis species 263 476157 0 1 Altererythrobacter atlanticus species 1267766 752 Altererythrobacter epoxidivorans 0 1 567 361183 species 0 2 genus 1437 1855416 1 0 Erythrobacter flavus species 567 192812 266951 870 species Erythrobacter seohaensis 1 0 0 2 992 2800681 genus species 442 1648404 0 1 Erythrobacter atlanticus 550 502682 species Erythrobacter gangjinensis 0 1 1 0 2800682 1351 genus Altererythrobacter namhicola 0 1 species 1351 645517 2 0 genus 1212 2800686 692370 682 species Altererythrobacter dongtanensis 1 0 species 530 1982042 0 1 Altererythrobacter mangrovi 0 6 no rank 3752 2800788 Erythrobacter 3 0 74 1 1041 2019 genus Porphyrobacter neustonensis 0 1 species 835 1112 species 39960 1110 0 1 Erythrobacter litoralis genus 1111 1733 1 Porphyrobacter 3 0 45 1688 2683265 no rank 0 2 Porphyrobacter HT-58-2 1 0 species 2023229 597 Porphyrobacter sp. LM 6 0 1 species 1896196 1091 Croceicoccus 3 0 38 1 1642 1295327 genus 1 0 Croceicoccus naphthovorans 1348774 636 species species 968 450378 Croceicoccus marinus 0 1 family 47138 41297 1 0 59 672 Sphingomonadaceae genus 1145 1649486 1 Rhizorhabdus 24 0 2 species 1121 1850238 Rhizorhabdus dicambivorans 1 0 genus 15651 13687 1 Sphingomonas 344 0 15 species 93064 1125 0 1 Sphingomonas koreensis Sphingomonas panacis 0 1 species 1560345 951 0 1 Sphingomonas sanxanigenens 397260 1380 species species 1549858 1451 Sphingomonas taxi 1 0 0 1 Sphingomonas hengshuiensis 1609977 820 species species 1070 152682 0 1 Sphingomonas melonis 0 6 no rank 196159 6111 1030157 625 species Sphingomonas sp. KC8 1 0 Sphingomonas sp. MM-1 0 1 species 745310 1072 species 1327635 766 Sphingomonas sp. Cra20 0 1 0 1 Sphingomonas sp. NIC1 1961362 1232 species species 1938607 1015 Sphingomonas sp. LM7 0 1 1 0 Sphingomonas sp. LK11 1401 1390395 species 1414 0 2 Sphingomonas wittichii 1 160791 2399 species strain 985 1283312 1 0 Sphingomonas sp. DC-6 1 0 genus 2709685 561 561 266812 species Sphingorhabdus flavimaris 1 0 2685927 831 genus 1 0 1921510 831 species Sphingomonas sp. JJ-A5 0 1 genus 72173 958 1 Citromicrobium 46 2 0 0 1 2630544 912 no rank 1634516 912 species Citromicrobium sp. JL477 1 0 13834 165695 genus Sphingobium 15 0 254 1 0 1 Sphingobium yanoikuyae species 13690 1254 Sphingobium indicum 1 0 species 332055 844 0 1 Sphingobium baderi 750 1332080 species no rank 5678 2611147 0 6 713 1855519 species 1 0 Sphingobium sp. EP60837 1006 407020 species Sphingobium sp. MI1205 1 0 1039 1315974 species 1 0 Sphingobium sp. TKS Sphingobium sp. YBL2 1 0 1134 484429 species 1843368 795 species 1 0 Sphingobium sp. RAC03 0 1 Sphingobium sp. SYK-6 991 627192 species Sphingobium chlorophenolicum 0 1 species 1215 46429 988 120107 species 0 1 Sphingobium cloacae species 1218 1673076 Sphingobium hydrophobicum 0 1 Sphingobium japonicum 0 1 332056 781 species 76947 852 species 0 1 Sphingobium herbicidovorans 1 29 0 3 Sphingorhabdus genus 1434046 1446 2614947 1417 no rank 0 2 1806885 724 species 1 0 Sphingorhabdus sp. M41 Sphingorhabdus sp. YGSMI21 0 1 693 2077182 species genus 861 541 1 2 0 1 Zymomonas 0 1 Zymomonas mobilis 542 860 species 6490 165697 genus 132 0 10 Sphingopyxis 1 species 597 33052 Sphingopyxis terrae 1 0 Sphingopyxis macrogoltabida 0 1 species 33050 1260 267128 841 species 1 0 Sphingopyxis granuli Sphingopyxis alaskensis 1 0 species 117207 603 0 4 no rank 2526 2614943 1 0 Sphingopyxis sp. LPB0140 species 1913578 262 0 1 Sphingopyxis sp. QXT-31 species 1357916 949 species 627 292913 Sphingopyxis sp. 113P3 1 0 species 1866325 688 1 0 Sphingopyxis sp. MG Sphingopyxis fribergensis 1 0 species 531 1515612 genus 165696 3929 1 0 5 68 Novosphingobium Novosphingobium pentaromativorans 1 0 205844 1073 species species 876 158500 1 0 Novosphingobium resinovorum species 48935 933 Novosphingobium aromaticivorans 1 0 0 1 no rank 979 2644732 1 0 Novosphingobium sp. PP1Y 702113 979 species 1 2 0 Blastomonas 1 150203 760 genus no rank 2626550 759 0 1 1842535 759 species 1 0 Blastomonas sp. RAC04 161 20 0 Caulobacterales 1 204458 19579 order family 76892 19418 1 0 19 203 Caulobacteraceae 1 Asticcacaulis 15 0 2 genus 76890 900 species 78587 885 Asticcacaulis excentricus 0 1 1604 20 genus Phenylobacterium 2 0 10 1 Phenylobacterium zucineum 0 1 species 1594 284016 genus 41275 7097 1 Brevundimonas 7 0 259 Brevundimonas subvibrioides 1 0 74313 1279 species 3343 2622653 no rank 0 3 1 0 Brevundimonas sp. GW460-12-10-14-LB2 951 1827469 species 1532555 1063 species Brevundimonas sp. DS20 1 0 1 0 Brevundimonas sp. LM2 species 1938605 1329 Brevundimonas naejangsanensis 0 1 species 588932 1304 1 0 Brevundimonas vesicularis 41276 912 species 81440 506 no rank 1 0 species 1759059 506 Caulobacteraceae bacterium OTSz_A_272 0 1 1 Caulobacter 102 0 6 genus 75 9108 species 88688 1519 1 0 Caulobacter segnis 0 1 2202 2648921 no rank Caulobacter sp. K31 0 1 2202 366602 species species 1615 69666 1 0 Caulobacter mirabilis 155892 2725 species Caulobacter vibrioides 0 1 69395 945 species Caulobacter henricii 0 1 9 4 0 Parvularculales 1 255473 496 order 0 3 2 Parvularculaceae 1 487 255474 family 485 208215 genus Parvularcula 0 2 1 1 species 484 208216 Parvularcula bermudensis 0 1 order 766 5855 1 Rickettsiales 16 53 0 1328881 172 family Candidatus Midichloriaceae 2 0 1 1 1 0 genus 171 411566 species 171 234827 0 1 Candidatus Midichloria mitochondrii 27 0 3 Rickettsiaceae 1 2971 775 family 1 5 2 0 Candidatus Phycorickettsia genus 2115980 159 0 1 Candidatus Phycorickettsia trachydisci 2115978 154 species 24 0 tribe 2809 33988 498 0 23 Rickettsia 1 780 2662 genus 0 17 1111 114277 species group 42862 176 species 1 0 Rickettsia felis species 35794 27 0 1 Rickettsia slovaca 0 1 Rickettsia australis 108 787 species 0 1 Rickettsia parkeri species 35792 16 Rickettsia peacockii 1 0 species 32 47589 Rickettsia japonica 1 0 species 35790 16 247 109232 species 0 1 Rickettsia monacensis 0 1 Rickettsia philipii 15 1105106 species 21 781 species Rickettsia conorii 0 1 species 33992 87 Rickettsia rhipicephali 0 1 Rickettsia akari 0 1 species 141 786 0 1 Rickettsia heilongjiangensis species 226665 21 Rickettsia africae 1 0 species 7 35788 species 33991 19 Rickettsia montanensis 1 0 Rickettsia rickettsii 0 1 species 783 40 33989 109 species 1 0 Rickettsia amblyommatis 29 35791 species 1 0 Rickettsia massiliae 0 2 species group 1129742 488 Rickettsia bellii 0 1 species 299 33990 0 1 Rickettsia canadensis species 788 189 0 1 no rank 265 114295 265 337479 species Rickettsia endosymbiont of Bemisia tabaci 1 0 0 2 species group 300 114292 Rickettsia prowazekii 1 0 162 782 species 785 138 species 0 1 Rickettsia typhi 69474 147 genus 0 1 species 784 147 Orientia tsutsugamushi 1 0 1 0 no rank 1699067 180 species 1528098 180 0 1 Rickettsiales bacterium Ac37b 1 Anaplasmataceae 2 0 22 family 942 2516 tribe 869 952 8 0 1 7 0 8 Wolbachia genus 953 869 2640676 862 no rank 0 7 0 1 Wolbachia endosymbiont of Drosophila melanogaster species 133 163164 128 80849 species Wolbachia endosymbiont of Brugia malayi 0 1 species 77038 294 Wolbachia endosymbiont of Drosophila simulans 1 0 species 100901 60 1 0 Wolbachia endosymbiont of Onchocerca ochengi Wolbachia endosymbiont of Onchocerca volvulus 1 0 77551 61 species Wolbachia endosymbiont of Cimex lectularius 1 0 species 65 246273 species 66084 121 0 1 Wolbachia sp. wRi 33993 312 genus 0 3 950 180 species Neorickettsia risticii 1 0 Neorickettsia helminthoeca 0 1 96 33994 species Neorickettsia sennetsu 1 0 36 951 species genus 197 768 1 2 4 0 Anaplasma species 770 47 Anaplasma marginale 1 0 Anaplasma centrale 1 0 species 41 769 0 1 107 106179 species group 1 0 Anaplasma phagocytophilum 107 948 species genus 943 1136 1 4 0 6 Ehrlichia 4 0 species group 876 106178 species 779 248 Ehrlichia ruminantium 1 0 0 1 Ehrlichia canis 944 216 species species 204 35795 1 0 Ehrlichia muris 0 1 Ehrlichia chaffeensis species 208 945 0 1 no rank 106181 256 1 0 Ehrlichia sp. HF species 391036 256 948 1921002 order 2 0 6 Holosporales 1 family 44746 428 0 1 0 1 no rank 204454 428 endosymbiont of Acanthamoeba sp. UWC8 0 1 species 428 86106 Caedimonadaceae 0 2 1 1 227 2100208 family 1509243 226 genus 0 1 species 1509244 226 Candidatus Nucleicultrix amoebiphila 1 0 1 2 0 2 Candidatus Paracaedibacteraceae family 1777752 291 genus 289 1521255 1 0 91604 289 species Candidatus Paracaedibacter acanthamoebae 1 0 851 2800059 order 0 2 851 2800061 family 0 2 genus 851 74317 1 2 0 7 Maricaulis 844 74318 species 1 0 Maricaulis maris 3 0 1930617 1073 phylum 3 0 1962850 1073 class 3 0 order 1962852 1073 4 3 0 Calditrichaceae 1 1073 1962854 family genus 187144 1069 1 Caldithrix 1 2 0 species 1068 187145 0 1 Caldithrix abyssi 0 10 508458 4462 phylum 649775 4462 class Synergistia 0 10 61 1 1 Synergistales 38 9 0 order 4401 649776 family 649777 4363 1 304 0 8 Synergistaceae 1 0 genus 81466 397 81468 397 species 0 1 Aminobacterium colombiense genus 233 49894 1 0 233 97477 species 0 1 Acetomicrobium mobile 0 1 genus 336260 214 0 1 Thermovirga lienii 214 336261 species 81461 741 genus 36 2 0 Thermanaerovibrio 1 species 705 81462 Thermanaerovibrio acidaminovorans 1 0 genus 508459 2474 1 Cloacibacillus 7 0 2 Cloacibacillus porcorum 0 1 2467 1197717 species 5 0 phylum 200938 1845 class 1845 118001 1 5 0 9 Chrysiogenetes order 189769 1836 1 Chrysiogenales 0 4 99 family 189770 1737 1 Chrysiogenaceae 0 3 12 393029 1725 genus Desulfurispirillum 0 2 4 1 1 0 Desulfurispirillum indicum 1721 936456 species 0 2 739 2323 no rank clade 1783234 739 0 2 0 1 95818 284 phylum 0 1 284 1895827 no rank 1 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 284 2056494 95901 455 clade 0 1 class 2497643 455 0 1 1 0 order 455 2497644 0 1 455 2497645 family 0 1 1551504 455 genus 455 673862 species Candidatus Babela massiliensis 1 0 0 9 2408 200930 phylum Deferribacteres 9 0 10 1 68337 2408 class 2398 191393 order Deferribacterales 8 0 4 1 2394 191394 family Deferribacteraceae 15 0 7 1 1 Flexistipes 0 2 15 genus 569 2351 Flexistipes sinusarabici 1 0 species 2352 554 genus 53572 664 0 1 species 664 197162 Deferribacter desulfuricans 0 1 Denitrovibrio 3 2 0 1 578 117999 genus 575 118000 species 1 0 Denitrovibrio acetiphilus 0 1 genus 545865 568 Calditerrivibrio nitroreducens 1 0 568 477976 species 0 name 0 1