members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 6668306 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4760 30 12551 289 63314 0 2157 superkingdom 1783275 clade 59 11721 0 28889 phylum 44 5837 0 5837 44 1 0 Thermoprotei 183924 class 3 2266 order 865 12 0 570 7 1 0 Thermoproteaceae 2267 family 1 76886 genus 114 1 0 76887 Caldivirga maquilingensis species 1 114 0 0 2 132 genus 2270 species 2271 Thermoproteus tenax 0 1 57 1 75 0 184117 Thermoproteus uzoniensis species genus 2276 0 70 1 Pyrobaculum islandicum 2277 species 70 1 0 genus 164450 0 253 2 species 985052 Vulcanisaeta moutnovskia 0 1 113 species 164451 Vulcanisaeta distributa 0 1 140 family 114378 0 295 5 0 1 5 295 21 genus 2268 Thermofilum 0 49 1 species Thermofilum pendens 2269 species 1483572 Thermofilum carboxyditrophus 0 1 83 0 1 90 species 1365176 Thermofilum adornatus 1550241 Thermofilum uzonense species 1 52 0 3 order 2281 Sulfolobales 0 1 12 3269 21 family 118883 Sulfolobaceae 0 1 11 3266 0 1 2 448 2 genus 12914 Acidianus Acidianus hospitalis 563177 species 446 1 0 207 2 0 41980 genus 0 1 102 species 43687 Metallosphaera sedula 0 1 105 species 1006005 Metallosphaera cuprina 1 545 0 69655 genus Sulfolobus tokodaii 111955 species 545 1 0 4 1563 0 1 2284 Sulfolobus 5 genus species 43080 Sulfolobus islandicus 0 1 837 0 1 449 no rank 2641160 0 1 449 species 1891280 Sulfolobus sp. A20 272 1 0 Sulfolobus acidocaldarius 2285 species genus 2100760 0 482 1 482 1 0 Sulfolobus solfataricus 2287 species order 1 Desulfurococcales 114380 1 0 1078 16 1 0 229 4 family 19 Pyrodictiaceae 2307 54247 genus 1 114 0 0 1 114 species 54248 Hyperthermus butylicus genus 2308 0 1 21 1273541 Pyrodictium delaneyi species 1 21 0 0 75 1 genus 54251 Pyrolobus fumarii 54252 species 75 1 0 2272 Desulfurococcaceae 2 family 11 848 0 1 2 121 0 2273 genus species 94694 Desulfurococcus amylolyticus 0 1 94 2275 Desulfurococcus mucosus species 1 27 0 477695 Thermogladius 19 genus 2 42 0 1 0 23 1 species Thermogladius calderae 1200300 1 41 0 54253 genus species Thermosphaera aggregans 54254 0 41 1 19 genus 2279 Staphylothermus 0 1 3 535 0 200 1 species Staphylothermus hellenicus 84599 species 2280 Staphylothermus marinus 0 1 316 0 2 107 genus 54258 0 1 43 species 54259 Ignicoccus islandicus species Ignicoccus hospitalis 160233 0 64 1 871006 order 622 3 0 0 1 2 577 1 family 255472 Caldisphaeraceae genus 200414 0 1 576 0 576 1 species Caldisphaera lagunensis 200415 871007 family 45 1 0 105850 genus 45 1 0 0 45 1 species Acidilobus saccharovorans 242703 13 5836 0 1 651137 Thaumarchaeota 2 phylum class 1643678 0 2 1735 0 988 1 order 1968909 1968910 family 1 988 0 genus 498374 0 988 1 988 1 0 Candidatus Nitrosocaldus islandicus 2045011 species 1033996 order 1 747 0 0 1 747 family 1033997 497726 genus 1 747 0 species 1034015 Nitrososphaera viennensis 0 1 747 Nitrosopumilales 31932 order 4 2309 6 1 0 0 2305 5 family 338190 genus 3 Candidatus Nitrosomarinus 1993653 1 0 866 2 species 1898749 Candidatus Nitrosomarinus catalina 0 1 863 0 1 3 1439 11 genus 338191 Nitrosopumilus 0 1 692 species 1580092 Candidatus Nitrosopumilus adriaticus Candidatus Nitrosopumilus sediminis 1229909 species 736 1 0 0 1790 4 no rank 651142 2 450 0 1825023 genus species 1846278 Candidatus Nitrosotenuis sp. AQ6f 0 1 253 Candidatus Nitrosotenuis cloacae 1603555 species 197 1 0 genus 10 Candidatus Nitrosopelagicus 1593364 1 0 1340 2 species Candidatus Nitrosopelagicus brevis 1410606 0 1330 1 51967 phylum 48 2 0 Candidatus Korarchaeum 498845 genus 1 48 2 1 0 0 47 1 species Candidatus Korarchaeum cryptofilum 498846 1 0 51523 229 phylum 8 Euryarchaeota 28890 0 17537 44 clade 2283794 1 0 8767 26 class 6 Methanobacteria 183925 Methanobacteriales 2158 order 11 8761 25 1 0 0 1 22 8229 6 family 2159 Methanobacteriaceae 2316 genus 990 1 0 1 990 0 2317 Methanosphaera stadtmanae species 0 1 5 509 17 genus 145260 Methanothermobacter 132 1 0 2631116 no rank 0 1 132 species 866790 Methanothermobacter sp. CaT2 145262 Methanothermobacter thermautotrophicus species 1 113 0 Methanothermobacter marburgensis 145263 species 133 1 0 145261 Methanothermobacter wolfeii species 1 114 0 20 genus 2160 Methanobacterium 0 1 8 2345 59277 Methanobacterium subterraneum species 1 251 0 0 308 1 species Methanobacterium formicicum 2162 1 473 0 868131 Methanobacterium paludis species 0 508 1 species Methanobacterium lacus 877455 0 2 498 no rank 2627676 0 1 234 species 1911685 Methanobacterium sp. MZ-A1 264 1 0 Methanobacterium sp. MB1 1379702 species 0 287 1 species Methanobacterium congolense 118062 4379 7 1 0 Methanobrevibacter 2172 genus 5 species Methanobrevibacter ruminantium 83816 0 567 1 0 1022 1 species Methanobrevibacter olleyae 294671 1 840 0 2173 Methanobrevibacter smithii species no rank 2638681 0 1266 2 Methanobrevibacter sp. AbM4 224719 species 683 1 0 1609968 Methanobrevibacter sp. YE315 species 1 583 0 Methanobrevibacter millerae 230361 species 679 1 0 Methanothermaceae 2178 family 3 521 2 1 0 genus 2179 0 518 1 2180 Methanothermus fervidus species 1 518 0 12 class 183939 Methanococci 0 1 18 8770 1 0 8758 17 order 8 Methanococcales 2182 family 1 Methanocaldococcaceae 196117 1 0 3943 9 genus 196119 0 505 1 species 2189 Methanotorris igneus 0 1 505 Methanocaldococcus 196118 genus 11 3437 7 1 0 1301915 Methanocaldococcus bathoardescens species 1 663 0 2641196 no rank 578 1 0 1 578 0 644281 Methanocaldococcus sp. FS406-22 species Methanocaldococcus vulcanius 73913 species 493 1 0 0 1 640 species 83171 Methanocaldococcus fervens 67760 Methanocaldococcus infernus species 1 419 0 0 633 1 species Methanocaldococcus jannaschii 2190 4807 7 1 0 Methanococcaceae 2183 family 5 0 468 1 genus 155862 0 1 468 species 155863 Methanothermococcus okinawensis Methanococcus 2184 genus 8 4334 5 1 0 2461 1 0 Methanococcus maripaludis 39152 species species 42879 Methanococcus aeolicus 0 1 522 2187 Methanococcus vannielii species 1 628 0 715 1 0 Methanococcus voltae 2188 species 983 11 0 183980 class 11 983 0 1 2231 Archaeoglobales 2 order family 7 Archaeoglobaceae 2232 1 0 981 10 Archaeoglobus 2233 genus 9 601 5 1 0 184 1 0 Archaeoglobus sulfaticallidus 1316941 species 1 125 0 58290 Archaeoglobus veneficus species species Archaeoglobus profundus 84156 0 154 1 0 1 129 species 2234 Archaeoglobus fulgidus genus 1 Geoglobus 190818 1 0 200 3 113653 Geoglobus ahangari species 1 88 0 Geoglobus acetivorans 565033 species 111 1 0 173 1 0 54260 genus 1 173 0 54261 Ferroglobus placidus species 0 1 41 3729 3 class 183968 Thermococci 40 3726 0 1 2258 Thermococcales 8 order 3718 39 1 0 Thermococcaceae 2259 family 2 2263 Thermococcus 13 genus 29 2651 0 1 399 6 0 2627626 no rank species 246969 Thermococcus sp. AM4 0 1 73 55 1 0 Thermococcus sp. 4557 1042877 species 51 1 0 Thermococcus sp. 5-4 2008440 species 2016361 Thermococcus sp. EXT12c species 1 66 0 108 1 0 Thermococcus sp. 2319x1 1674923 species 0 46 1 species Thermococcus sp. P6 122420 0 1 56 species 311400 Thermococcus kodakarensis 0 1 33 species 342948 Thermococcus onnurineus Thermococcus thioreducens 277988 species 85 1 0 species 172049 Thermococcus sibiricus 0 1 276 0 1 50 species 53952 Thermococcus peptonophilus 38 1 0 Thermococcus barossii 54077 species 0 56 1 species Thermococcus guaymasensis 110164 0 1 235 species 582419 Thermococcus paralvinellae 0 105 1 species Thermococcus chitonophagus 54262 45 1 0 Thermococcus pacificus 71998 species Thermococcus celer 2264 species 59 1 0 163003 Thermococcus cleftensis species 1 28 0 1 45 0 71997 Thermococcus gorgonarius species 133 1 0 Thermococcus litoralis 2265 species 1 61 0 187880 Thermococcus radiotolerans species 0 387 1 species Thermococcus siculi 72803 1 65 0 1505907 Thermococcus eurythermalis species species Thermococcus gammatolerans 187878 0 65 1 1 234 0 55802 Thermococcus barophilus species Thermococcus nautili 195522 species 63 1 0 species 49899 Thermococcus profundus 0 1 59 0 1 61 species 1712654 Thermococcus piezophilus 83867 genus 1 168 0 0 1 168 species 971279 Palaeococcus pacificus 0 1 8 897 6 genus 2260 Pyrococcus 0 54 1 species Pyrococcus yayanosii 1008460 0 341 2 no rank 2629106 species 1183377 Pyrococcus sp. ST04 0 1 193 species Pyrococcus sp. NA2 342949 0 148 1 species 29292 Pyrococcus abyssi 0 1 100 1609559 Pyrococcus kukulkanii species 1 93 0 species 53953 Pyrococcus horikoshii 0 1 118 1 185 0 2261 Pyrococcus furiosus species 0 22 3537 clade 2283796 3 478 0 1803510 clade Aciduliprofundum 379546 genus 3 478 3 1 0 0 204 1 no rank 2633939 1 204 0 673860 Aciduliprofundum sp. MAR08-339 species 0 1 271 species 379547 Aciduliprofundum boonei class 183967 0 19 3059 no rank 1234666 0 182 1 0 1 182 species 1495144 methanogenic archaeon ISO4-H5 2052 13 1 0 Thermoplasmatales 2301 order 4 46659 family 3 446 0 11 genus 2302 Thermoplasma 0 1 3 446 281 1 0 Thermoplasma volcanium 50339 species 1 154 0 2303 Thermoplasma acidophilum species 3 437 0 1 1747776 Cuniculiplasmataceae 5 family 2 432 0 1 1747777 Cuniculiplasma 4 genus species Cuniculiplasma divulgatum 1673428 0 428 1 0 3 685 family 90142 9 genus 74968 Ferroplasma 0 1 3 685 1 331 0 97393 Ferroplasma acidarmanus species 345 1 0 Ferroplasma acidiphilum 74969 species family 46630 0 2 299 Picrophilus 46631 genus 10 299 2 1 0 Picrophilus torridus 82076 species 289 1 0 0 1 181 no rank 1919231 species Thermoplasmatales archaeon BRNA1 1054217 0 181 1 1235850 order 825 5 0 1 187 0 2517203 family 1291539 genus 1 187 0 187 1 0 Candidatus Methanomethylophilus alvus 1291540 species Methanomassiliicoccaceae 1577788 family 17 638 4 1 0 429 2 1 0 Methanomassiliicoccus 1080709 genus 2 0 427 1 species Candidatus Methanomassiliicoccus intestinalis 1406512 0 192 1 genus 1607807 1577791 Candidatus Methanoplasma termitum species 1 192 0 110 25729 0 2290931 clade 224756 Methanomicrobia 3 class 50 10670 0 1 1 0 1422 18 order 7 Methanomicrobiales 2191 family 196137 0 2 246 246 2 1 0 Methanospirillum 2202 genus 5 0 241 1 species Methanospirillum hungatei 2203 696 7 1 0 Methanomicrobiaceae 2194 family 3 Methanolacinia 230355 genus 3 238 2 1 0 Methanolacinia petrolearia 54120 species 235 1 0 genus 8 Methanoculleus 45989 1 0 455 4 105 1 0 2619537 no rank 1 105 0 86622 Methanoculleus sp. MAB1 species 148 1 0 Methanoculleus bourgensis 83986 species 1 194 0 2198 Methanoculleus marisnigri species 2 81 0 88404 family 81 2 1 0 Methanocorpusculum 2192 genus 2 79 1 0 Methanocorpusculum labreanum 83984 species 1198451 Methanoregulaceae 4 family 6 392 0 1 0 1 3 214 6 genus 395331 Methanoregula 1 96 0 358766 Methanoregula boonei species 1 112 0 882104 Methanoregula formicica species 1 0 174 2 genus 4 Methanosphaerula 475087 1 170 0 475088 Methanosphaerula palustris species 0 1 27 8819 14 order 94695 Methanosarcinales 3 498 0 143067 family 2222 Methanothrix 8 genus 3 498 0 1 230 1 0 Methanothrix soehngenii 2223 species 260 1 0 Methanosaeta harundinacea 301375 species 8307 23 1 0 Methanosarcinaceae 2206 family 11 genus 25 Methanosarcina 2207 1 0 5948 13 Methanosarcina siciliae 38027 species 525 1 0 0 320 1 species Methanosarcina acetivorans 2214 0 1 452 species 2215 Methanosarcina vacuolata 1 411 0 418008 Methanosarcina horonobensis species species 2209 Methanosarcina mazei 0 1 718 374 1 0 Methanosarcina lacustris 170861 species 0 1 294 species 2210 Methanosarcina thermophila 0 1487 1 species Methanosarcina barkeri 2208 2644672 no rank 1342 4 0 1 301 0 1434103 Methanosarcina sp. WWM596 species 0 441 1 species Methanosarcina sp. Kolksee 1434099 1434100 Methanosarcina sp. MTP4 species 1 327 0 273 1 0 Methanosarcina sp. WH1 1434102 species 2175 genus 2 476 0 Methanohalophilus mahii 2176 species 257 1 0 species 2177 Methanohalophilus halophilus 0 1 219 189 1 0 2220 genus 1 189 0 420950 Methanolobus psychrophilus species 2321 genus 1 570 0 species Methanohalobium evestigatum 2322 0 570 1 0 2 506 genus 2225 0 1 236 species 2226 Methanococcoides methylutens 270 1 0 Methanococcoides burtonii 29291 species 1 0 292 2 genus 2 Methanomethylovorans 101191 0 290 1 species Methanomethylovorans hollandica 101192 1 315 0 196136 genus 315 1 0 Methanosalsum zhilinae 39669 species Methanocellales 570264 order 4 426 4 1 0 570265 family 422 3 0 1 0 422 3 genus 14 Methanocella 570266 1 234 0 1175445 Methanocella arvoryzae species 0 174 1 species Methanocella conradii 1175444 0 1 60 15059 45 class 183963 Halobacteria 5991 17 1 0 Haloferacales 1644055 order 111 0 1 265 no rank 2678336 1 265 0 756883 halophilic archaeon DL31 species 1644056 Haloferacaceae 16 family 8 4166 0 1 2 2377 0 1 293431 Haloquadratum 1 genus species Haloquadratum walsbyi 293091 0 2376 1 genus 60846 0 1 230 species 60847 Halogeometricum borinquense 0 1 230 4 1543 0 1 2251 Haloferax 4 genus 0 1 679 species 35746 Haloferax gibbonsii species Haloferax mediterranei 2252 0 256 1 604 1 0 Haloferax volcanii 2246 species family 6 Halorubraceae 1963271 1 0 1449 7 658 3 1 0 Halorubrum 56688 genus 4 29284 Halorubrum trapanicum species 1 407 0 species 2247 Halorubrum lacusprofundi 0 1 247 1209988 genus 1 264 0 0 264 1 species Halopenitus persicus 1048396 1644057 Salinigranum 5 genus 2 521 0 1 species Salinigranum rubrum 755307 0 516 1 0 1 16 5695 62 order 1644060 Natrialbales family 14 Natrialbaceae 1644061 1 0 5633 15 121871 genus 994 2 0 species Haloterrigena turkmenica 62320 0 448 1 1 546 0 588898 Haloterrigena daqingensis species 1 0 524 3 genus 3 Natrinema 88723 0 306 1 species Natrinema pellirubrum 69525 0 215 1 no rank 2622230 species 406552 Natrinema sp. J7-2 0 1 215 genus 1269201 0 292 1 no rank 2621923 0 292 1 1 292 0 1333523 Salinarchaeum sp. Harcht-Bsk1 species 194 1 0 353799 genus 353800 Halostagnicola larsenii species 1 194 0 0 1 262 genus 2256 Natronobacterium gregoryi 44930 species 262 1 0 1 0 1914 2 genus 6 Natrialba 63742 Natrialba magadii 13769 species 1908 1 0 3 genus 203193 Halobiforma 0 1 2 638 species Halobiforma lacisalsi 229731 0 635 1 494 1 0 387342 genus 0 494 1 species Halopiger xanaduensis 387343 29287 genus 1 307 0 307 1 0 Natronococcus occultus 29288 species 2235 Halobacteriales 13 order 26 3328 0 1 family 3 Haloarculaceae 1963268 1 0 2048 15 5 724 0 1 2237 Haloarcula 10 genus Haloarcula taiwanensis 1932004 species 163 1 0 1 184 0 2624677 no rank 0 1 184 species 1592728 Haloarcula sp. CBA1115 species 51589 Haloarcula hispanica 0 1 193 0 1 174 species 2238 Haloarcula marismortui 472 3 1 0 Natronomonas 63743 genus 6 2257 Natronomonas pharaonis species 1 216 0 416273 Natronomonas moolapensis species 1 250 0 0 282 2 genus 146825 Halorhabdus utahensis 146826 species 142 1 0 species Halorhabdus tiamatea 430914 0 140 1 3 genus 203135 Halomicrobium 0 1 2 285 species Halomicrobium mukohataei 57705 0 282 1 0 1 2 282 3 genus 1073987 Halorientalis 0 279 1 no rank 2648975 1932360 Halorientalis sp. IM1011 species 1 279 0 0 1 10 1267 4 family 2236 Halobacteriaceae 163 2 1 0 Halalkalicoccus 332246 genus 2 0 161 1 species Halalkalicoccus jeotgali 413810 1980514 genus 93 1 0 1 93 0 1873524 Halodesulfurarchaeum formicicum species 2 genus 1656823 Halanaeroarchaeum 0 1 2 142 1604004 Halanaeroarchaeum sulfurireducens species 1 140 0 0 1 4 865 9 genus 2239 Halobacterium 1 285 0 2668073 no rank species Halobacterium sp. DL1 751944 0 285 1 2242 Halobacterium salinarum species 1 232 0 1 339 0 1407499 Halobacterium hubeiense species clade 1783276 0 1 70 phylum 1801631 0 70 1 0 70 1 genus 2490204 0 70 1 species Candidatus Micrarchaeota archaeon Mia14 1920749 0 0 name 1 1 0 6592441 4440 superkingdom 47 Bacteria 2 200938 phylum 333 5 0 class 3 Chrysiogenetes 118001 1 0 333 5 order 3 Chrysiogenales 189769 1 0 330 4 Chrysiogenaceae 189770 family 5 327 3 1 0 1 0 322 2 genus 9 Desulfurispirillum 393029 313 1 0 Desulfurispirillum indicum 936456 species 42 16889 0 200918 phylum 16889 42 1 0 Thermotogae 188708 class 32 order 8 Petrotogales 1643947 1 0 5839 7 1643949 family 6 5831 0 28236 genus 1 876 0 species Petrotoga mobilis 69499 0 876 1 1 0 3554 3 genus 32 Marinitoga 160798 1 1725 0 2640159 no rank species Marinitoga sp. 1137 1545835 0 1725 1 149715 Marinitoga piezophila species 1 1797 0 6 genus 1511648 Defluviitoga 0 1 2 1401 species 1006576 Defluviitoga tunisiensis 0 1 1395 order 1 Kosmotogales 1643946 1 0 973 6 0 1 5 972 6 family 1643948 Kosmotogaceae 1 genus 651456 Kosmotoga 0 1 3 768 1 452 0 1330330 Kosmotoga pacifica species species 651457 Kosmotoga olearia 0 1 315 1184396 genus 198 1 0 198 1 0 Mesotoga prima 1184387 species 2419 Thermotogales 16 order 28 10045 0 1 10 6716 0 1 1643950 Fervidobacteriaceae 26 family 6 genus 2422 Fervidobacterium 0 1 4 1898 820 1 0 Fervidobacterium pennivorans 93466 species species 2423 Fervidobacterium islandicum 0 1 335 2424 Fervidobacterium nodosum species 1 737 0 5 4792 0 1 2420 Thermosipho 33 genus 0 2156 2 no rank 2676525 0 1120 1 species Thermosipho sp. 1070 1437364 1462747 Thermosipho sp. 1063 species 1 1036 0 1447 1 0 Thermosipho africanus 2421 species 1 1156 0 46541 Thermosipho melanesiensis species 3313 17 1 0 Thermotogaceae 188709 family 13 1 0 1588 11 genus 55 Thermotoga 2335 0 1 152 species 2336 Thermotoga maritima 0 4 471 no rank 2631113 0 1 147 species 1157948 Thermotoga sp. 2812B 1 103 0 126738 Thermotoga sp. RQ7 species 112 1 0 Thermotoga sp. Cell2 1157947 species 109 1 0 Thermotoga sp. RQ2 126740 species 97 1 0 Thermotoga petrophila 93929 species 1 506 0 1508420 Thermotoga profunda species 1 125 0 2337 Thermotoga neapolitana species Thermotoga caldifontis 1508419 species 58 1 0 Thermotoga naphthophila 93930 species 124 1 0 0 1 5 1712 27 genus 1643951 Pseudothermotoga 131 1 0 Pseudothermotoga hypogea 57487 species species Pseudothermotoga lettingae 177758 0 548 1 1 412 0 119394 Pseudothermotoga thermarum species species 38322 Pseudothermotoga elfii 0 1 594 648 4 0 2498710 clade 67814 phylum 648 4 0 693071 class 648 4 0 order 3 Caldisericales 693072 1 0 648 4 1 family 693073 Caldisericaceae 0 1 3 645 0 1 2 644 1 genus 693074 Caldisericum 693075 Caldisericum exile species 1 643 0 2069 10 1 0 Elusimicrobia 74152 phylum 5 0 1071 5 class 447830 1 0 1071 5 order 3 Endomicrobiales 1783344 1 family 1783343 Endomicrobiaceae 0 1 4 1068 3 1067 0 1 1408194 Endomicrobium 5 genus species 1408281 Endomicrobium proavitum 0 1 482 0 580 1 species Candidatus Endomicrobium trichonymphae 1408204 no rank 99260 0 604 1 604 1 0 uncultured Termite group 1 bacterium 167965 species 0 3 389 class 641853 0 389 3 order 641854 641876 Elusimicrobiaceae 2 family 3 389 0 1 1 0 387 2 genus 4 Elusimicrobium 423604 1 383 0 423605 Elusimicrobium minutum species 1783257 clade 92 36609 0 203682 phylum 21893 34 0 8 class 666505 Phycisphaerae 0 1 7 1435 7 order 666506 Phycisphaerales 0 1 4 830 1 0 823 3 family 3 Phycisphaeraceae 666507 4 genus 666508 Phycisphaera 0 1 2 820 0 816 1 species Phycisphaera mikurensis 547188 order 2483366 0 2 597 597 2 0 2483367 family 2 597 0 2483368 genus species Phycisphaerae bacterium L21-RPul-D3 1940790 0 261 1 1 336 0 1941349 Phycisphaerae bacterium ST-PulAB-D4 species 0 1 24 5763 21 class 203683 Planctomycetia 1545 7 0 2691356 order 7 1545 0 1 1763524 Isosphaeraceae 5 family 1763521 Paludisphaera 2 genus 2 575 0 1 species Paludisphaera borealis 1387353 0 573 1 471 2 1 0 Isosphaera 127 genus 7 0 464 1 species Isosphaera pallida 128 1 0 494 2 genus 9 Singulisphaera 466152 Singulisphaera acidiphila 466153 species 485 1 0 2691354 order 1124 4 0 family 2691357 0 910 3 0 1 2 427 1 genus 265488 Rhodopirellula 1 426 0 265606 Rhodopirellula baltica species 1 483 0 123 genus 1 483 0 125 Pirellula staleyi species family 2691358 0 214 1 1676125 genus 214 1 0 1 214 0 1331910 Thermogutta terrifontis species 112 Planctomycetales 86 order 9 2495 0 1 126 Planctomycetaceae 22 family 8 2409 0 1 2 397 0 1 1649490 Rubinisphaera 5 genus Rubinisphaera brasiliensis 119 species 392 1 0 genus 9 Planctomyces 118 1 0 1155 3 2 1146 0 2648843 no rank 658 1 0 Planctomyces sp. SH-PL62 1636152 species 1 488 0 1632864 Planctomyces sp. SH-PL14 species 0 301 1 genus 1649480 301 1 0 Planctopirus limnophila 120 species genus 1936111 0 534 1 1891926 Fuerstia marisgermanicae species 1 534 0 2691355 order 3 578 0 0 1 3 578 3 family 1914233 Gemmataceae 0 1 2 575 5 genus 113 Gemmata 2622970 no rank 1 570 0 0 570 1 species Gemmata sp. SH-PL17 1630693 14695 3 0 2517206 class 10 order 1127829 Candidatus Brocadiales 0 1 3 14695 0 2 14685 family 1127830 2 14685 0 1 380738 Candidatus Kuenenia 1 genus 0 1 14684 species 174633 Candidatus Kuenenia stuttgartiensis 7751 26 1 0 Verrucomicrobia 74201 phylum 12 class 203494 0 5 1160 1 0 1160 5 order 11 Verrucomicrobiales 48461 3 family 1647988 Akkermansiaceae 0 1 4 1149 239934 Akkermansia 3 genus 3 1146 0 1 1 584 0 1679444 Akkermansia glycaniphila species 559 1 0 Akkermansia muciniphila 239935 species 1234 2 0 417295 no rank 562 1 0 Verrucomicrobia bacterium IMCC26134 1637999 species 2026799 Verrucomicrobia bacterium species 1 672 0 0 1 11 4059 9 class 414999 Opitutae Opitutales 415000 order 23 2182 6 1 0 0 1 5 2159 10 family 134623 Opitutaceae 1961799 genus 732 1 0 species Lacunisphaera limnophila 1838286 0 732 1 0 1 2 603 5 genus 178440 Opitutus 0 1 598 species 107709 Opitutus terrae 1 814 0 278955 no rank 794903 Opitutaceae bacterium TAV5 species 1 814 0 1868 4 1 0 Puniceicoccales 415001 order 3 415002 Puniceicoccaceae 2 family 3 1865 0 1 5 genus 442430 Coraliomargarita 0 1 2 1863 1858 1 0 Coraliomargarita akajimensis 395922 species 1074 5 1 0 Methylacidiphilae 1955630 class 2 4 1072 0 717963 order 1 0 1072 4 family 9 Methylacidiphilaceae 717964 Methylacidiphilum 511745 genus 3 1063 3 1 0 0 1 414 species 511746 Methylacidiphilum infernorum 0 1 646 species 591154 Methylacidiphilum fumariolicum 2 212 0 134549 class 2 212 0 1 134550 Candidatus Xiphinematobacter 6 genus 0 206 1 no rank 2648876 species Candidatus Xiphinematobacter sp. Idaho Grape 1704307 0 206 1 134625 phylum 399 5 0 0 1 5 399 6 class 1921781 Kiritimatiellae 4 order 1921782 Kiritimatiellales 0 1 4 393 1921783 Kiritimatiellaceae 4 family 3 389 0 1 385 2 1 0 Kiritimatiella 1921784 genus 9 Kiritimatiella glycovorans 1307763 species 376 1 0 256845 phylum 3 571 0 15 class 1313211 Lentisphaeria 0 1 3 571 2 556 0 1 278082 Victivallales 3 order no rank 1674876 0 1 553 Victivallales bacterium CCUG 44730 2094242 species 553 1 0 0 24 5995 phylum 204428 class 12 Chlamydiia 204429 1 0 5995 24 0 1 14 4230 11 order 51291 Chlamydiales 4 family 809 Chlamydiaceae 0 1 13 4219 no rank 1113537 0 4215 12 1 0 4215 12 genus 74 Chlamydia 810 1 316 0 813 Chlamydia trachomatis species 0 1 431 species 85991 Chlamydia pecorum 0 1 431 species 1457153 Chlamydia gallinacea species 83560 Chlamydia muridarum 0 1 349 83554 Chlamydia psittaci species 1 367 0 Chlamydia avium 1457141 species 450 1 0 Chlamydia suis 83559 species 222 1 0 83555 Chlamydia abortus species 1 281 0 species Chlamydia felis 83556 0 378 1 0 551 1 species Chlamydia pneumoniae 83558 0 365 1 species Chlamydia caviae 83557 1753 9 1 0 Parachlamydiales 1963360 order 7 4 1133 0 1 92713 Parachlamydiaceae 2 family 282132 genus 1 447 0 species 389348 Candidatus Protochlamydia naegleriophila 0 1 447 genus 1 Parachlamydia 83551 1 0 684 2 1 683 0 83552 Parachlamydia acanthamoebae species 262 2 0 92714 family genus 2 Waddlia 71666 1 0 262 2 1 260 0 71667 Waddlia chondrophila species 0 351 2 family 92712 34093 Simkania 1 genus 2 351 0 1 0 350 1 species Simkania negevensis 83561 phylum 200940 0 10 3638 Thermodesulfobacteria 67799 class 3 3638 10 1 0 3635 9 1 0 Thermodesulfobacteriales 188710 order 5 8 3630 0 1 188711 Thermodesulfobacteriaceae 6 family 1 0 2587 3 genus 7 Thermodesulfobacterium 1740 0 1 754 species 1741 Thermodesulfobacterium commune species 1295609 Thermodesulfobacterium geofontis 0 1 1826 1 genus 444090 Caldimicrobium 0 1 2 569 1653476 Caldimicrobium thiodismutans species 1 568 0 468 2 1 0 Thermodesulfatator 241192 genus 2 species 171695 Thermodesulfatator indicus 0 1 466 45093 25 0 32066 phylum 56 class 203490 Fusobacteriia 0 1 25 45093 Fusobacteriales 203491 order 64 45037 24 1 0 14 family 1129771 Leptotrichiaceae 0 1 11 10287 1955 2 1 0 Streptobacillus 34104 genus 5 0 1 1950 species 34105 Streptobacillus moniliformis Leptotrichia 32067 genus 34 5830 5 1 0 0 1440 1 species Leptotrichia buccalis 40542 4356 3 0 2633022 no rank 1 1255 0 712357 Leptotrichia sp. oral taxon 212 species 1 1495 0 712368 Leptotrichia sp. oral taxon 498 species species 1785996 Leptotrichia sp. oral taxon 847 0 1 1606 genus 3 Sneathia 168808 1 0 1177 2 187101 Sneathia amnii species 1 1174 0 0 1311 1 genus 32068 1 1311 0 826 Sebaldella termitidis species family 38 Fusobacteriaceae 203492 1 0 34686 12 0 1 2 1443 8 genus 167639 Ilyobacter 0 1 1435 species 167642 Ilyobacter polytropus 33205 9 1 0 Fusobacterium 848 genus 169 species Fusobacterium mortiferum 850 0 1999 1 0 6699 1 species Fusobacterium periodonticum 860 0 797 1 species Fusobacterium necrophorum 859 species Fusobacterium hwasookii 1583098 0 3731 1 species 856 Fusobacterium varium 0 1 4215 Fusobacterium ulcerans 861 species 2126 1 0 849 Fusobacterium gonidiaformans species 1 1179 0 851 Fusobacterium nucleatum species 1 12290 0 Proteobacteria 1224 phylum 338 1701236 2050 1 0 1428 6 0 1807140 class 35 order 225057 Acidithiobacillales 0 1 6 1428 0 1 5 1393 15 family 225058 Acidithiobacillaceae 4 1378 0 1 119977 Acidithiobacillus 17 genus 1 464 0 160808 Acidithiobacillus ferrivorans species 920 Acidithiobacillus ferrooxidans species 1 389 0 0 508 1 species Acidithiobacillus caldus 33059 906 628392 0 1 1236 Gammaproteobacteria 1269 class 17835 52 1 0 Chromatiales 135613 order 140 72276 Ectothiorhodospiraceae 72 family 18 5398 0 1 Spiribacter 1335745 genus 12 872 3 1 0 1 421 0 1335757 Spiribacter curvatus species 0 439 1 species Spiribacter salinus 1335746 1 0 572 2 genus 6 Acidihalobacter 1765964 species Acidihalobacter prosperus 160660 0 566 1 11 genus 133193 Alkalilimnicola 0 1 2 529 Alkalilimnicola ehrlichii 351052 species 518 1 0 Ectothiorhodospira 1051 genus 4 521 2 1 0 2684909 no rank 1 517 0 0 517 1 species Ectothiorhodospira sp. BSL-9 1442136 0 1 6 2464 96 genus 106633 Thioalkalivibrio species Thioalkalivibrio nitratireducens 186931 0 407 1 0 1 570 species 108010 Thioalkalivibrio paradoxus 1 322 0 106634 Thioalkalivibrio versutus species 654 1 0 Thioalkalivibrio sulfidiphilus 1033854 species no rank 2621013 0 415 1 Thioalkalivibrio sp. K90mix 396595 species 415 1 0 1 0 368 2 genus 3 Halorhodospira 85108 species 1053 Halorhodospira halophila 0 1 365 451214 no rank 493 2 0 Thiohalobacter 1273155 genus 21 493 2 1 0 Thiohalobacter thiocyanaticus 585455 species 472 1 0 0 1 18 8460 51 family 1046 Chromatiaceae 0 1 2 553 8 genus 156885 Thioflavicoccus species Thioflavicoccus mobilis 80679 0 545 1 2 399 0 1 85072 Allochromatium 11 genus 1049 Allochromatium vinosum species 1 388 0 13724 Thiocystis 4 genus 2 518 0 1 species 73141 Thiocystis violascens 0 1 514 1 555 0 82569 no rank 0 1 555 species 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 1 2 2323 26 genus 53392 Thiodictyon 0 1 2297 species 1166950 Candidatus Thiodictyon syntrophicum Candidatus Nitrosoglobus 1980513 genus 12 1145 2 1 0 0 1133 1 species Candidatus Nitrosoglobus terrae 1630141 602 2 1 0 Marichromatium 85076 genus 8 0 594 1 species Marichromatium purpuratum 37487 12 genus 1227 Nitrosococcus 0 1 4 2314 133539 Nitrosococcus halophilus species 1 474 0 668 1 0 Nitrosococcus oceani 1229 species 1 1160 0 473531 Nitrosococcus watsonii species 3 743 0 1 1738654 Woeseiaceae 2 family Woeseia 1738655 genus 15 741 2 1 0 1 726 0 1548547 Woeseia oceani species family 12 Halothiobacillaceae 255526 1 0 698 4 genus 15 Halothiobacillus 109262 1 0 686 3 2636392 no rank 1 301 0 0 301 1 species Halothiobacillus sp. LS2 1860122 0 370 1 species Halothiobacillus neapolitanus 927 1 0 623 3 family 5 Wenzhouxiangellaceae 1676141 genus 16 Wenzhouxiangella 1676142 1 0 618 2 0 602 1 species Wenzhouxiangella marina 1579979 0 1 3 1280 11 family 449719 Granulosicoccaceae genus 22 Granulosicoccus 437504 1 0 1269 2 Granulosicoccus antarcticus 437505 species 1247 1 0 1 0 20563 33 order 14 Pasteurellales 135625 32 20549 0 1 712 Pasteurellaceae 165 family 1 0 1878 5 genus 15 Actinobacillus 713 715 Actinobacillus pleuropneumoniae species 1 596 0 species Actinobacillus suis 716 0 503 1 306 1 0 Actinobacillus succinogenes 67854 species species 718 Actinobacillus equuli 0 1 458 genus 6 Gallibacterium 155493 1 0 826 2 820 1 0 Gallibacterium anatis 750 species 2 1407 0 1 214906 Histophilus 9 genus Histophilus somni 731 species 1398 1 0 Aggregatibacter 416916 genus 14 1381 3 1 0 1 593 0 714 Aggregatibacter actinomycetemcomitans species 774 1 0 Aggregatibacter aphrophilus 732 species 1280 2 1 0 Glaesserella 2094023 genus 6 0 1274 1 species Glaesserella parasuis 738 genus 27 Pasteurella 745 1 0 3371 3 species 754 Pasteurella dagmatis 0 1 914 747 Pasteurella multocida species 1 2430 0 0 1 4 2360 19 genus 75984 Mannheimia 1000 1 0 Mannheimia varigena 85404 species 75985 Mannheimia haemolytica species 1 637 0 no rank 2645054 0 704 1 0 1 704 species 1432056 Mannheimia sp. USDA-ARS-USMARC-1261 6558 6 1 0 Haemophilus 724 genus 67 [Haemophilus] ducreyi 730 species 1298 1 0 species Haemophilus pittmaniae 249188 0 480 1 0 1 743 species 729 Haemophilus parainfluenzae 3358 1 0 Haemophilus influenzae 727 species 1 612 0 2609962 no rank 0 1 612 species 712310 Haemophilus sp. oral taxon 036 1 genus 697331 Basfia 0 1 2 338 [Mannheimia] succiniciproducens 157673 species 337 1 0 0 1 2 985 1 genus 476528 Bibersteinia Bibersteinia trehalosi 47735 species 984 1 0 33 order 135623 Vibrionales 0 1 44 60233 60200 43 1 0 Vibrionaceae 641 family 213 3477 2 1 0 Paraphotobacterium 2042066 genus 5 species Paraphotobacterium marinum 1755811 0 3472 1 11853 4 1 0 Photobacterium 657 genus 18 38293 Photobacterium damselae species 1 10075 0 species Photobacterium gaetbulicola 1295392 0 527 1 species Photobacterium profundum 74109 0 1233 1 genus 1 Grimontia 246861 1 0 472 2 1 471 0 673 Grimontia hollisae species 0 1 4 4729 47 genus 511678 Aliivibrio 80852 Aliivibrio wodanis species 1 2025 0 0 1 1510 species 668 Aliivibrio fischeri 0 1147 1 species Aliivibrio salmonicida 40269 30 39456 0 1 662 Vibrio 438 genus 0 4642 1 species Vibrio tasmaniensis 212663 1 1022 0 45658 Vibrio scophthalmi species 0 1203 1 species Vibrio gazogenes 687 species 676 Vibrio fluvialis 0 1 578 species Vibrio hyugaensis 1534743 0 638 1 0 636 1 species Vibrio nigripulchritudo 28173 16713 10 0 717610 species group 1 2334 0 670 Vibrio parahaemolyticus species 0 1 1284 species 691 Vibrio natriegens 1 673 0 766224 Vibrio jasicida species 1 5686 0 663 Vibrio alginolyticus species species 669 Vibrio harveyi 0 1 1234 2 1505 0 2315253 species subgroup species 50719 Vibrio diabolicus 0 1 971 0 534 1 species Vibrio antiquarius 150340 Vibrio owensii 696485 species 868 1 0 680 Vibrio campbellii species 1 2489 0 species Vibrio rotiferianus 190895 0 640 1 0 2 1097 no rank 2614977 1 685 0 1116375 Vibrio sp. EJY3 species 412 1 0 Vibrio sp. 2521-89 2014742 species species Vibrio anguillarum 55601 0 1280 1 553239 Vibrio breoganii species 1 630 0 1 597 0 2025808 Vibrio qinghaiensis species species 672 Vibrio vulnificus 0 1 2845 1 1068 0 666 Vibrio cholerae species 1 1084 0 52443 Vibrio tapetis species species group 1891919 0 1 1087 species 29498 Vibrio tubiashii 0 1 1087 Vibrio furnissii 29494 species 689 1 0 1 1688 0 190893 Vibrio coralliilyticus species species Vibrio tritonius 1435069 0 718 1 species 674 Vibrio mimicus 0 1 803 37472 54 1 0 Xanthomonadales 135614 order 167 39 33856 0 1 32033 Xanthomonadaceae 220 family 0 1 17 16699 320 genus 338 Xanthomonas 0 1 383 species 366650 Xanthomonas alfalfae 1 2594 0 339 Xanthomonas campestris species species 56458 Xanthomonas sacchari 0 1 547 0 3534 2 species group 643453 species Xanthomonas fuscans 366648 0 764 1 species Xanthomonas citri 346 0 2770 1 1 407 0 56454 Xanthomonas hortorum species 1985254 Xanthomonas phaseoli species 1 332 0 1 281 0 56459 Xanthomonas vasicola species species 29447 Xanthomonas albilineans 0 1 426 56460 Xanthomonas vesicatoria species 1 636 0 333 1 0 Xanthomonas euvesicatoria 456327 species 0 297 1 species Xanthomonas axonopodis 53413 0 2140 1 species Xanthomonas translucens 343 404 1 0 Xanthomonas perforans 442694 species 0 1 3190 species 347 Xanthomonas oryzae 0 1 875 species 48664 Xanthomonas fragariae 376 2 1 0 Luteimonas 83614 genus 2 2006110 Luteimonas sp. 100111 species 1 374 0 1 0 1259 3 genus 4 Pseudoxanthomonas 83618 0 309 1 species Pseudoxanthomonas spadix 415229 species 314722 Pseudoxanthomonas suwonensis 0 1 946 1 0 5070 5 genus 34 Lysobacter 68 Lysobacter gummosus 262324 species 860 1 0 0 1689 1 species Lysobacter capsici 435897 species 69 Lysobacter enzymogenes 0 1 753 0 1 1734 species 84531 Lysobacter antibioticus Xylella 2370 genus 1 2129 2 1 0 0 2128 1 species Xylella fastidiosa 2371 8103 9 1 0 Stenotrophomonas 40323 genus 115 species group 995085 0 4037 1 40324 Stenotrophomonas maltophilia species 1 4037 0 species Stenotrophomonas nitritireducens 83617 0 416 1 2237 4 0 196198 no rank species 1904944 Stenotrophomonas sp. LM091 0 1 310 1793721 Stenotrophomonas sp. KCTC 12332 species 1 455 0 species Stenotrophomonas sp. MYb57 1827305 0 825 1 Stenotrophomonas sp. WZN-1 2005046 species 647 1 0 0 1 418 species 216778 Stenotrophomonas rhizophila 1 880 0 128780 Stenotrophomonas acidaminiphila species family 32 Rhodanobacteraceae 1775411 1 0 3449 14 genus 14 Dokdonella 323413 1 0 572 2 558 1 0 Dokdonella koreensis 323415 species genus 2233801 0 288 1 0 288 1 species Xanthomonadales bacterium D13 2021234 genus 6 Frateuria 70411 1 0 447 2 Frateuria aurantia 81475 species 441 1 0 231454 Dyella 16 genus 4 1203 0 1 Dyella thiooxydans 445710 species 425 1 0 species 1379159 Dyella jiangningensis 0 1 367 231455 Dyella japonica species 1 395 0 0 1 2 350 2 genus 242605 Luteibacter Luteibacter rhizovicinus 242606 species 348 1 0 genus 6 Rhodanobacter 75309 1 0 557 2 0 1 551 species 666685 Rhodanobacter denitrificans 1 0 4480 13 order 24 Methylococcales 135618 4456 12 1 0 Methylococcaceae 403 family 26 Methylomicrobium 39773 genus 6 923 2 1 0 species 271065 Methylomicrobium alcaliphilum 0 1 917 2659 5 1 0 Methylomonas 416 genus 83 2608980 no rank 1 560 0 1727196 Methylomonas sp. DH-1 species 1 560 0 species 1538553 Methylomonas denitrificans 0 1 990 species 421 Methylomonas methanica 0 1 559 467 1 0 Methylomonas koyamae 702114 species Methylococcus 413 genus 7 349 2 1 0 species 414 Methylococcus capsulatus 0 1 342 Methylovulum 762296 genus 12 499 2 1 0 1 487 0 1704499 Methylovulum psychrotolerans species 12025 28 1 0 Aeromonadales 135624 order 48 0 1 27 11977 93 family 84642 Aeromonadaceae 0 1 2 518 12 genus 347533 Zobellella species 347534 Zobellella denitrificans 0 1 506 2 369 0 1 43947 Tolumonas 3 genus species Tolumonas auensis 43948 0 366 1 352 1 0 129577 genus no rank 2636315 0 352 1 0 1 352 species 511062 Oceanimonas sp. GK1 1141 3 1 0 Oceanisphaera 225143 genus 10 0 507 1 species Oceanisphaera profunda 1416627 species Oceanisphaera sp. AMac2203 1903694 0 624 1 1 0 9504 18 genus 353 Aeromonas 642 species 196024 Aeromonas dhakensis 0 1 280 1 1527 0 645 Aeromonas salmonicida species species 651 Aeromonas media 0 1 242 2075 1 0 Aeromonas hydrophila 644 species species 558964 Aeromonas aquatica 0 1 307 species Aeromonas veronii 654 0 1414 1 Aeromonas schubertii 652 species 265 1 0 0 1 186 species 648 Aeromonas caviae 0 254 1 species Aeromonas rivipollensis 948519 2601 8 0 257493 no rank Aeromonas sp. ASNIH2 1636607 species 333 1 0 1 215 0 1636608 Aeromonas sp. ASNIH3 species 0 492 1 species Aeromonas sp. ASNIH1 1636606 1 304 0 2033033 Aeromonas sp. CU5 species 0 299 1 species Aeromonas sp. CA23 2033032 0 285 1 species Aeromonas sp. ASNIH5 1758179 0 1 464 species 1636609 Aeromonas sp. ASNIH4 species Aeromonas sp. ASNIH7 1920107 0 209 1 4 order 1934945 Immundisolibacterales 0 1 4 597 593 3 1 0 Immundisolibacteraceae 1934946 family 5 0 1 2 588 10 genus 1934947 Immundisolibacter 1 578 0 1810504 Immundisolibacter cernigliae species 0 1 30 12914 41 order 1706369 Cellvibrionales Halieaceae 1706372 family 11 1637 4 1 0 genus 62 Halioglobus 1217416 1 0 1626 3 807 1 0 Halioglobus japonicus 930805 species 0 757 1 species Halioglobus pacificus 930806 Microbulbiferaceae 1706373 family 8 2185 5 1 0 1 0 2177 4 genus 57 Microbulbifer 48073 0 735 1 species Microbulbifer aggregans 1769779 0 691 1 species Microbulbifer thermotolerans 252514 0 694 1 species Microbulbifer agarilyticus 260552 1 0 5945 13 family 66 Cellvibrionaceae 1706371 1881 4 1 0 Cellvibrio 10 genus 14 1 575 0 155077 Cellvibrio japonicus species 1292 2 0 2624793 no rank species Cellvibrio sp. PSBB023 1945512 0 626 1 0 666 1 species Cellvibrio sp. PSBB006 1987723 447467 Simiduia 4 genus 2 515 0 1 1 511 0 447471 Simiduia agarivorans species 0 1 2 1085 2 genus 316625 Saccharophagus 0 1083 1 species Saccharophagus degradans 86304 698 2 1 0 Teredinibacter 2425 genus 4 Teredinibacter turnerae 2426 species 694 1 0 2036021 Agarilytica 1 genus 2 1700 0 1 1699 1 0 Agarilytica rhodophyticola 1737490 species Spongiibacteraceae 1706375 family 46 3106 7 1 0 1 0 922 2 genus 9 Spongiibacter 630749 0 1 913 no rank 2631504 1 913 0 1620392 Spongiibacter sp. IMCC21906 species 1 0 1354 2 genus 2 Oceanicoccus 1084558 Oceanicoccus sagamiensis 716816 species 1352 1 0 Zhongshania 1434050 genus 13 784 2 1 0 0 771 1 species Zhongshania aliphaticivorans 1470434 270 order 72274 Pseudomonadales 0 1 129 100431 0 1 86 55402 323 family 135621 Pseudomonadaceae 1 0 53072 80 genus 1185 Pseudomonas 286 320 1 0 Pseudomonas entomophila 312306 species 0 1 190 species 244566 Pseudomonas lurida 0 650 1 species Pseudomonas brassicacearum 930166 0 2 3509 species group 136846 3119 1 0 578833 species subgroup species Pseudomonas stutzeri 316 0 3119 1 390 1 0 Pseudomonas balearica 74829 species 322 1 0 Pseudomonas alcaliphila 101564 species species group 136843 0 9 9093 200450 Pseudomonas trivialis species 1 452 0 species 200451 Pseudomonas poae 0 1 211 76761 Pseudomonas veronii species 1 244 0 1 277 0 47879 Pseudomonas corrugata species 0 304 1 species Pseudomonas mandelii 75612 species 47878 Pseudomonas azotoformans 0 1 786 380021 Pseudomonas protegens species 1 505 0 Pseudomonas fluorescens 294 species 6088 1 0 species 76758 Pseudomonas orientalis 0 1 226 Pseudomonas versuta 1788301 species 294 1 0 species Pseudomonas knackmussii 65741 0 464 1 0 1 752 species 104087 Pseudomonas frederiksbergensis 1583341 Pseudomonas cerasi species 1 369 0 0 2408 2 species group 136842 296 Pseudomonas fragi species 1 698 0 species 587753 Pseudomonas chlororaphis 0 1 1710 species group 136849 0 8 5213 no rank 2775504 0 399 1 species 1206777 Pseudomonas sp. Lz4W 0 1 399 1 251 0 36746 Pseudomonas cichorii species species subgroup 251698 0 1005 2 1 564 0 29438 Pseudomonas savastanoi species Pseudomonas amygdali 47877 species 441 1 0 46257 Pseudomonas avellanae species 1 261 0 species Pseudomonas viridiflava 33069 0 198 1 0 2356 1 species subgroup 251695 317 Pseudomonas syringae species 1 2356 0 0 1 743 species 251701 Pseudomonas syringae group genomosp. 3 species Pseudomonas rhizosphaerae 216142 0 297 1 6 6946 0 136841 species group species Pseudomonas citronellolis 53408 0 788 1 species 43263 Pseudomonas alcaligenes 0 1 444 Pseudomonas resinovorans 53412 species 438 1 0 species 287 Pseudomonas aeruginosa 0 1 3226 1415 1 0 Pseudomonas mendocina 300 species 1 635 0 1232139 species subgroup species Pseudomonas furukawaii 1149133 0 635 1 30 10415 0 196821 no rank 1294143 Pseudomonas sp. ATCC 13867 species 1 401 0 Pseudomonas sp. St29 1500687 species 307 1 0 species 1207075 Pseudomonas sp. UW4 0 1 253 1 345 0 1611770 Pseudomonas sp. MRSN12121 species species 1827300 Pseudomonas sp. MYb193 0 1 260 species Pseudomonas sp. CCOS 191 1649877 0 298 1 Pseudomonas sp. FGI182 1259844 species 244 1 0 species 2018067 Pseudomonas sp. FDAARGOS_380 0 1 238 0 376 1 species Pseudomonas sp. TCU-HL1 1856685 1 370 0 1931241 Pseudomonas sp. S-6-2 species 1981174 Pseudomonas sp. M30-35 species 1 495 0 0 277 1 species Pseudomonas sp. DR 5-09 1534110 69328 Pseudomonas sp. VLB120 species 1 247 0 0 305 1 species Pseudomonas sp. StFLB209 1028989 0 621 1 species Pseudomonas sp. URMO17WK12:I11 1283291 0 292 1 species Pseudomonas sp. XWY-1 2069256 2083055 Pseudomonas sp. LH1G9 species 1 241 0 Pseudomonas sp. HLS-6 2049589 species 265 1 0 species 1636610 Pseudomonas sp. PONIH3 0 1 317 species 1338689 Pseudomonas sp. JY-Q 0 1 300 Pseudomonas sp. TKP 1415630 species 842 1 0 species 2083054 Pseudomonas sp. LG1D9 0 1 277 species Pseudomonas sp. SWI44 2083053 0 289 1 Pseudomonas sp. GR 6-02 1659194 species 320 1 0 species Pseudomonas sp. NC02 2067572 0 279 1 Pseudomonas sp. SWI36 2083052 species 334 1 0 1 624 0 1930532 Pseudomonas sp. CC6-YY-74 species species Pseudomonas sp. Os17 1500686 0 324 1 346 1 0 Pseudomonas sp. LPH1 1898684 species species 2083051 Pseudomonas sp. SWI6 0 1 328 250 1 0 Pseudomonas cremoricolorata 157783 species 157782 Pseudomonas parafulva species 1 682 0 1 279 0 237609 Pseudomonas alkylphenolica species species Pseudomonas psychrotolerans 237610 0 399 1 Pseudomonas antarctica 219572 species 237 1 0 species group 136845 0 7459 6 1 287 0 70775 Pseudomonas plecoglossicida species 0 965 1 species Pseudomonas mosselii 78327 619 1 0 Pseudomonas fulva 47880 species species 303 Pseudomonas putida 0 1 4249 948 1 0 Pseudomonas monteilii 76759 species 47885 Pseudomonas oryzihabitans species 1 391 0 1853130 Pseudomonas silesiensis species 1 689 0 species 198620 Pseudomonas koreensis 0 1 650 0 3 1215 subfamily 351 genus 6 Azotobacter 352 1 0 1215 3 353 Azotobacter chroococcum species 1 766 0 0 443 1 species Azotobacter vinelandii 354 2 792 0 1 1849530 Oblitimonas 5 genus 1 787 0 1697053 Oblitimonas alkaliphila species Moraxellaceae 468 family 113 44759 42 1 0 Psychrobacter 497 genus 137 7046 11 1 0 654 1 0 Psychrobacter cryohalolentis 330922 species 334543 Psychrobacter arcticus species 1 690 0 1 822 0 261164 Psychrobacter alimentarius species 4137 6 0 196806 no rank 1 976 0 349106 Psychrobacter sp. PRwf-1 species species Psychrobacter sp. AntiMn-1 1720344 0 530 1 Psychrobacter sp. P2G3 1699622 species 645 1 0 species 1699624 Psychrobacter sp. P11G5 0 1 645 728 1 0 Psychrobacter sp. DAB_AL43B 1028416 species Psychrobacter sp. G 571800 species 613 1 0 Psychrobacter urativorans 45610 species 606 1 0 1 0 33967 25 genus 439 Acinetobacter 469 0 1 1295 species 29430 Acinetobacter haemolyticus species Acinetobacter larvae 1789224 0 843 1 1 889 0 202950 species 1 889 0 62977 Acinetobacter sp. ADP1 strain 5999 7 0 196816 no rank Acinetobacter sp. ACNIH1 1636603 species 855 1 0 668 1 0 Acinetobacter sp. LoGeW2-3 1808001 species 1608473 Acinetobacter sp. NCu2D-2 species 1 778 0 1407071 Acinetobacter sp. TGL-Y2 species 1 890 0 1758189 Acinetobacter sp. ACNIH2 species 1 986 0 0 1051 1 species Acinetobacter sp. TTH0-4 1646498 Acinetobacter sp. SWBY1 2079596 species 771 1 0 species Acinetobacter johnsonii 40214 0 878 1 0 1502 1 species Acinetobacter junii 40215 909768 species group 15233 5 0 0 1 5044 species 48296 Acinetobacter pittii 0 1644 1 species Acinetobacter nosocomialis 106654 0 1231 1 species Acinetobacter lactucae 1785128 0 4897 1 species Acinetobacter baumannii 470 Acinetobacter calcoaceticus 471 species 2417 1 0 species Acinetobacter oleivorans 1148157 0 1216 1 0 1691 1 species Acinetobacter equi 1324350 species 487316 Acinetobacter soli 0 1 743 106648 Acinetobacter bereziniae species 1 1334 0 0 1 722 species 40216 Acinetobacter radioresistens Acinetobacter schindleri 108981 species 706 1 0 species Acinetobacter indicus 756892 0 477 1 475 Moraxella 41 genus 5 3633 0 1 0 1433 1 species Moraxella osloensis 34062 1 740 0 386891 Moraxella bovoculi species species Moraxella catarrhalis 480 0 956 1 0 1 463 species 29433 Moraxella ovis 0 3 559 order 135615 0 1 3 559 5 family 868 Cardiobacteriaceae genus 11 Dichelobacter 869 1 0 554 2 0 1 543 species 870 Dichelobacter nodosus 1 0 31318 71 order 106 Oceanospirillales 135619 224379 Hahellaceae 1 family 3 658 0 1 Hahella 158481 genus 3 657 2 1 0 0 654 1 species Hahella chejuensis 158327 0 1 3 1089 20 family 191033 Oleiphilaceae 0 1 2 1069 9 genus 141450 Oleiphilus 1 1060 0 141451 Oleiphilus messinensis species 13695 31 1 0 Halomonadaceae 28256 family 99 500 2 1 0 Salinicola 404432 genus 5 Salinicola tamaricis 1771309 species 495 1 0 2 673 0 1 204286 Cobetia 1 genus 0 672 1 species Cobetia marina 28258 376488 genus 488 1 0 1 488 0 376489 Halotalea alkalilenta species 42054 Chromohalobacter 12 genus 2 387 0 1 1 375 0 158080 Chromohalobacter salexigens species 3 853 0 1 504090 Kushneria 22 genus species Kushneria marisflavi 157779 0 321 1 species Kushneria konosiri 698828 0 510 1 0 1 15 6754 131 genus 2745 Halomonas species Halomonas campaniensis 213554 0 436 1 species Halomonas beimenensis 475662 0 518 1 species Halomonas chromatireducens 507626 0 372 1 1897729 Halomonas aestuarii species 1 482 0 0 1 537 species 1178482 Halomonas huangheensis 0 1 414 species 115561 Halomonas hydrothermalis 8 3864 0 2609666 no rank 453 1 0 Halomonas sp. 'Soap Lake #7' 1962264 species Halomonas sp. KO116 1504981 species 558 1 0 0 1 533 species 1883416 Halomonas sp. 1513 species Halomonas sp. R57-5 1610576 0 448 1 Halomonas sp. 'Soap Lake #6' 1949203 species 445 1 0 1118153 Halomonas sp. GFAJ-1 species 1 359 0 550 1 0 Halomonas sp. GT 1971364 species 518 1 0 Halomonas sp. SF2003 2136172 species 5 3941 0 114403 no rank 1 616 0 114185 genus species Candidatus Carsonella ruddii 114186 0 616 1 genus 5 Candidatus Portiera 235572 1 0 2154 2 Candidatus Portiera aleyrodidarum 91844 species 2149 1 0 1 0 1171 2 genus 5 Candidatus Evansia 1495768 species Candidatus Evansia muelleri 1495769 0 1166 1 135620 Oceanospirillaceae 37 family 13 7089 0 1 19 genus 28253 Marinomonas 0 1 4 3501 0 1 952 species 936476 Marinomonas posidonica 119864 Marinomonas mediterranea species 1 1047 0 no rank 196814 0 1483 1 1 1483 0 400668 Marinomonas sp. MWYL1 species 187492 Thalassolituus 4 genus 2 1021 0 1 1017 1 0 Thalassolituus oleivorans 187493 species 1088 2 1 0 Oleispira 188907 genus 7 0 1081 1 species Oleispira antarctica 188908 genus 10 Marinobacterium 48075 1 0 817 2 807 1 0 Marinobacterium aestuarii 1821621 species 1 0 625 2 genus 8 Bacterioplanes 1537406 0 617 1 species Bacterioplanes sanyensis 1249553 1 0 1870 5 family 9 Saccharospirillaceae 255527 951 2 1 0 Reinekea 230494 genus 6 Reinekea forsetii 1336806 species 945 1 0 2 910 0 1 1445504 Gynuella 4 genus species Gynuella sunshinyii 1445505 0 906 1 3313 9 1 0 Alcanivoracaceae 224372 family 27 641 2 1 0 Ketobacter 2025617 genus 17 species 1917421 Ketobacter alkanivorans 0 1 624 0 1 6 2645 105 genus 59753 Alcanivorax 499 1 0 Alcanivorax borkumensis 59754 species 1 454 0 1094342 Alcanivorax xenomutans species 0 607 1 species Alcanivorax pacificus 1306787 no rank 2638842 0 452 1 species Alcanivorax sp. NBRC 101098 1113728 0 452 1 528 1 0 Alcanivorax dieselolei 285091 species 6 3498 0 1 1920240 Kangiellaceae 30 family 261963 Kangiella 43 genus 5 3468 0 1 species Kangiella geojedonensis 914150 0 836 1 0 1 751 species 1144748 Kangiella sediminilitoris species Kangiella koreensis 261964 0 963 1 0 875 1 species Kangiella profundi 1561924 118884 no rank 14 14901 0 734 2 1 0 Pseudohongiella 1524249 genus 8 1249552 Pseudohongiella spirulinae species 1 726 0 0 1 2 459 6 genus 1608298 Thiolapillus 453 1 0 Thiolapillus brandeum 1076588 species 3 5080 0 1 655184 Candidatus Thioglobus 23 genus species 1705394 Candidatus Thioglobus autotrophicus 0 1 1556 1 3501 0 1427364 Candidatus Thioglobus singularis species 198346 clade 2648 1 0 0 2648 1 species Candidatus Baumannia cicadellinicola 186490 4 5314 0 32036 clade 1385 1 0 Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 species 2343 1 0 Calyptogena okutanii thioautotrophic gill symbiont 410330 species 1 genus 1541743 Candidatus Ruthia 0 1 2 1586 1585 1 0 Candidatus Ruthia magnifica 386487 species genus 12 Sedimenticola 349742 1 0 666 2 1543721 Sedimenticola thiotaurini species 1 654 0 1 0 83480 105 order 189 Alteromonadales 135622 7 family 267894 Psychromonadaceae 0 1 4 3024 67572 Psychromonas 17 genus 3 3017 0 1 species 357794 Psychromonas ingrahamii 0 1 1692 1308 1 0 2614957 no rank 0 1 1308 species 314282 Psychromonas sp. CNPT3 1 0 27692 25 family 43 Pseudoalteromonadaceae 267888 1 0 27649 24 genus 542 Pseudoalteromonas 53246 0 1 1142 species 166935 Pseudoalteromonas translucida Pseudoalteromonas piratica 1348114 species 1167 1 0 1131 1 0 Pseudoalteromonas phenolica 161398 species 247523 Pseudoalteromonas aliena species 1 1275 0 394751 Pseudoalteromonas arctica species 1 1185 0 0 1080 1 species Pseudoalteromonas luteoviolacea 43657 1 1014 0 28107 Pseudoalteromonas espejiana species species 228 Pseudoalteromonas haloplanktis 0 1 1069 species 28109 Pseudoalteromonas nigrifaciens 0 1 1060 194690 no rank 5 7216 0 1 996 0 234831 Pseudoalteromonas sp. SM9913 species 1761891 Pseudoalteromonas sp. 13-15 species 1 1011 0 0 1 2889 species 1514074 Pseudoalteromonas sp. NC201 species Pseudoalteromonas sp. Bsw20308 283699 0 1192 1 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1720343 species 1128 1 0 0 869 1 species Pseudoalteromonas tetraodonis 43659 1 761 0 43662 Pseudoalteromonas piscicida species 0 888 1 species Pseudoalteromonas issachenkonii 152297 0 1 890 species 176102 Pseudoalteromonas agarivorans 43658 Pseudoalteromonas rubra species 1 647 0 939 1 0 Pseudoalteromonas marina 267375 species species Pseudoalteromonas spongiae 298657 0 1415 1 species Pseudoalteromonas tunicata 314281 0 1574 1 species Pseudoalteromonas atlantica 288 0 1785 1 267891 Moritellaceae 16 family 3 1690 0 1 1674 2 1 0 Moritella 58050 genus 10 species 80854 Moritella viscosa 0 1 1664 0 1 25 18990 33 family 267890 Shewanellaceae 1 0 18957 24 genus 250 Shewanella 22 0 1 1176 species 60217 Shewanella violacea 0 402 1 species Shewanella bicestrii 2018305 species 70864 Shewanella pealeana 0 1 658 Shewanella japonica 93973 species 1263 1 0 1 672 0 192073 Shewanella denitrificans species 1 1050 0 56812 Shewanella frigidimarina species species 225848 Shewanella psychrophila 0 1 1335 species Shewanella putrefaciens 24 0 848 1 1 337 0 60478 Shewanella amazonensis species species Shewanella woodyi 60961 0 1103 1 species 359303 Shewanella loihica 0 1 345 0 391 1 species Shewanella marisflavi 260364 0 446 1 species Shewanella oneidensis 70863 3363 6 0 196818 no rank 1 440 0 60480 Shewanella sp. MR-4 species 2059264 Shewanella sp. Pdp11 species 1 708 0 0 499 1 species Shewanella sp. ANA-3 94122 1 599 0 2029986 Shewanella sp. WE21 species 60481 Shewanella sp. MR-7 species 1 439 0 Shewanella sp. W3-18-1 351745 species 678 1 0 1 887 0 271097 Shewanella sediminis species 1853 1 0 Shewanella baltica 62322 species Shewanella halifaxensis 271098 species 1662 1 0 916 1 0 Shewanella piezotolerans 404011 species 6 2081 0 1 267893 Idiomarinaceae 5 family Idiomarina 135575 genus 81 2076 5 1 0 Idiomarina piscisalsi 1096243 species 522 1 0 2614829 no rank 2 876 0 1 396 0 2100422 Idiomarina sp. OT37-5b species species Idiomarina sp. X4 2055892 0 480 1 Idiomarina loihiensis 135577 species 597 1 0 family 22 Colwelliaceae 267889 1 0 10630 9 0 1 2 1532 4 genus 1518149 Thalassotalea 1528 1 0 Thalassotalea crassostreae 1763536 species 85 genus 28228 Colwellia 0 1 6 9076 1 1960 0 28229 Colwellia psychrerythraea species 0 5256 3 no rank 196834 species Colwellia sp. PAMC 21821 1816219 0 1894 1 0 1 1913 species 1816218 Colwellia sp. PAMC 20917 1449 1 0 Colwellia sp. MT41 58049 species 1 1775 0 1967665 Colwellia beringensis species 291 2 0 267892 family 291 2 1 0 Ferrimonas 44011 genus 5 1 286 0 44012 Ferrimonas balearica species 30 18893 0 1 72275 Alteromonadaceae 70 family 10 9152 0 1 226 Alteromonas 113 genus Alteromonas naphthalenivorans 715451 species 878 1 0 898 1 0 Alteromonas addita 287094 species 28108 Alteromonas macleodii species 1 1631 0 species 233316 Alteromonas stellipolaris 0 1 1069 3 2297 0 2614992 no rank 1 777 0 1917158 Alteromonas sp. RW2A1 species species Alteromonas sp. MB-3u-76 2058133 0 783 1 0 1 737 species 1777491 Alteromonas sp. Mac1 0 1579 1 species Alteromonas mediterranea 314275 687 1 0 Alteromonas australica 589873 species genus 1 Lacimicrobium 1751872 1 0 776 2 species Lacimicrobium alkaliphilum 1526571 0 775 1 2076 3 1 0 Glaciecola 89404 genus 11 1079 1 0 Glaciecola nitratireducens 300231 species no rank 2618684 0 986 1 986 1 0 Glaciecola sp. 4H-3-7+YE-5 983545 species genus 145 Marinobacter 2742 1 0 4155 10 species Marinobacter adhaerens 1033846 0 360 1 1 341 0 1420916 Marinobacter similis species 1 398 0 1874317 Marinobacter salinus species species Marinobacter salarius 1420917 0 477 1 no rank 83889 0 1371 3 Marinobacter sp. LQ44 1749259 species 472 1 0 0 543 1 species Marinobacter sp. BSs20148 490759 0 356 1 species Marinobacter sp. CP1 1671721 330734 Marinobacter psychrophilus species 1 463 0 1 600 0 2743 Marinobacter hydrocarbonoclasticus species 2 816 0 1 261825 Agarivorans 3 genus species 680279 Agarivorans gilvus 0 1 813 3 genus 1621534 Paraglaciecola 0 1 2 1848 0 1845 1 species Paraglaciecola psychrophila 326544 order 6 Nevskiales 1775403 1 0 416 4 4 1 0 Sinobacteraceae 568386 family family 2689614 0 2 406 469322 Steroidobacter 12 genus 2 406 0 1 465721 Steroidobacter denitrificans species 1 394 0 49 order 72273 Thiotrichales 0 1 36 46149 15 10364 0 1 135616 Piscirickettsiaceae 64 family 1237 Piscirickettsia 5 genus 2 1781 0 1 Piscirickettsia salmonis 1238 species 1776 1 0 1 0 788 2 genus 6 Hydrogenovibrio 28884 39765 Hydrogenovibrio crunogenus species 1 782 0 4 4830 0 1 34067 Cycloclasticus 66 genus Cycloclasticus zancles 1329899 species 1665 1 0 no rank 2621467 0 3099 2 1 1592 0 385025 Cycloclasticus sp. P1 species 0 1507 1 species Cycloclasticus sp. PY97N 728003 1194 3 1 0 Thiomicrospira 933 genus 7 Thiomicrospira aerophila 92245 species 636 1 0 1 551 0 147268 Thiomicrospira cyclica species genus 9 Methylophaga 40222 1 0 1707 3 0 1 987 species 754476 Methylophaga nitratireducenticrescens 754477 Methylophaga frappieri species 1 711 0 34064 Francisellaceae 42 family 15 32481 0 1 Francisella 262 genus 389 30569 12 1 0 0 1 2496 species 573570 Francisella sp. TX077310 28110 Francisella philomiragia species 1 4397 0 0 1555 1 species Francisella persica 954 Francisella noatunensis 657445 species 3123 1 0 0 1919 1 species Francisella sp. TX077308 573569 1 3294 0 549298 Francisella halioticida species species 1542390 Francisella sp. CA97-1460 0 1 2895 1 1793 0 622488 Francisella hispaniensis species no rank 2610885 0 3622 2 1 2032 0 1547445 Francisella sp. FSC1006 species 1590 1 0 Francisella sp. MA067296 475375 species 5086 1 0 Francisella tularensis 263 species 1 0 1870 2 genus 3 Allofrancisella 1869285 Allofrancisella guangzhouensis 594679 species 1867 1 0 135617 Thiotrichaceae 20 family 5 3255 0 1 2 1419 0 1 40751 Thioploca 1 genus 1 1418 0 40754 Thioploca ingrica species Beggiatoa 1021 genus 9 1816 2 1 0 0 1 1807 species 288004 Beggiatoa leptomitoformis 1023 2 0 33811 no rank 0 459 1 species endosymbiont of unidentified scaly snail isolate Monju 1248727 0 1 564 species 83406 gamma proteobacterium HdN1 1 0 24327 21 order 15 Legionellales 118969 49 family 444 Legionellaceae 0 1 15 21329 Tatlockia 465 genus 7 1207 2 1 0 451 Tatlockia micdadei species 1 1200 0 153 genus 445 Legionella 0 1 12 20073 species Legionella waltersii 66969 0 1529 1 0 1346 1 species Legionella clemsonensis 1867846 species 96230 Legionella fallonii 0 1 1607 Legionella longbeachae 450 species 1869 1 0 29423 Legionella oakridgensis species 1 1019 0 0 1324 1 species Legionella hackeliae 449 species 45067 Legionella lansingensis 0 1 1086 5822 1 0 Legionella pneumophila 446 species species Legionella spiritensis 452 0 614 1 0 1865 1 species Legionella endosymbiont of Polyplax serrata 2005262 0 1839 1 species Legionella sainthelensi 28087 Coxiellaceae 118968 family 40 2983 5 1 0 no rank 134284 0 1003 1 0 1 1003 species 1592897 Coxiella-like endosymbiont 13 genus 776 Coxiella 0 1 3 1940 777 Coxiella burnetii species 1 935 0 992 1 0 2676648 no rank Coxiella endosymbiont of Amblyomma americanum 325775 species 992 1 0 order 9 Acidiferrobacterales 1692040 1 0 1184 6 1692041 Acidiferrobacteraceae 12 family 5 1175 0 1 0 1 2 399 11 genus 1744881 Sulfuricaulis Sulfuricaulis limicola 1620215 species 388 1 0 0 1 2 764 15 genus 1692042 Sulfurifustis 1 749 0 1675686 Sulfurifustis variabilis species 464 order 91347 Enterobacterales 0 1 250 153925 451511 no rank 2 617 0 Plesiomonas 702 genus 16 617 2 1 0 species Plesiomonas shigelloides 703 0 601 1 1 0 31349 28 family 52 Erwiniaceae 1903409 Pantoea 53335 genus 118 4935 11 1 0 0 1 268 species 1076550 Pantoea rwandensis Candidatus Pantoea carbekii 1235990 species 1159 1 0 species Pantoea alhagi 1891675 0 290 1 species group 1654067 0 1 493 Pantoea agglomerans 549 species 493 1 0 Pantoea stewartii 66269 species 398 1 0 531 1 0 Pantoea ananatis 553 species Pantoea vagans 470934 species 744 1 0 0 934 3 no rank 2630326 0 350 1 species Pantoea sp. At-9b 592316 species Pantoea sp. PSNIH2 1484157 0 318 1 species 1484158 Pantoea sp. PSNIH1 0 1 266 59 genus 551 Erwinia 0 1 8 2576 0 1 404 species 182337 Erwinia billingiae 714 1 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 1922217 species 0 1 316 species 552 Erwinia amylovora Erwinia gerundensis 1619313 species 309 1 0 species Erwinia tasmaniensis 338565 0 240 1 1 224 0 79967 Erwinia pyrifoliae species no rank 2622719 0 310 1 0 1 310 species 215689 Erwinia sp. Ejp617 Tatumella 82986 genus 6 403 2 1 0 0 1 397 species 53336 Tatumella citrea 2100764 genus 2 663 0 1 346 0 665913 Pantoea calida species 0 1 317 species 665914 Pantoea gaviniae Buchnera 32199 genus 31 19106 2 1 0 species Buchnera aphidicola 9 0 19075 1 1 0 3614 2 genus 32 Wigglesworthia 51228 51229 Wigglesworthia glossinidia species 1 3582 0 22 13795 0 1 1903414 Morganellaceae 93 family 0 1 2 522 11 genus 581 Morganella 582 Morganella morganii species 1 511 0 Proteus 583 genus 29 3370 3 1 0 Proteus vulgaris 585 species 1277 1 0 species 584 Proteus mirabilis 0 1 2064 6 3072 0 1 626 Xenorhabdus 26 genus 1 610 0 628 Xenorhabdus nematophila species 502 1 0 Xenorhabdus doucetiae 351671 species 0 552 1 species Xenorhabdus hominickii 351679 0 504 1 species Xenorhabdus poinarii 40577 0 878 1 species Xenorhabdus bovienii 40576 0 1 4 2291 19 genus 29487 Photorhabdus 0 1 833 species 29488 Photorhabdus luminescens 1 823 0 291112 Photorhabdus asymbiotica species 1 616 0 574560 Photorhabdus temperata species 0 1 2 1793 8 genus 637 Arsenophonus species Arsenophonus symbiont of Lipoptena fortisetosa 634113 0 1785 1 genus 23 Providencia 586 1 0 2654 4 species 126385 Providencia alcalifaciens 0 1 674 1011 1 0 Providencia stuartii 588 species 946 1 0 Providencia rettgeri 587 species 1 0 64034 123 family 418 Enterobacteriaceae 543 5 2394 0 36866 no rank 0 1 226 species 2066051 Enterobacteriaceae bacterium ENNIH1 891974 Plautia stali symbiont species 1 1494 0 0 250 1 species Enterobacteriaceae bacterium ENNIH3 1920128 0 1 225 species 1920109 Enterobacteriaceae bacterium ENNIH2 199 1 0 Enterobacteriaceae bacterium strain FGI 57 693444 species 158483 Cedecea 5 genus 2 893 0 1 1 888 0 158822 Cedecea neteri species Candidatus Ishikawaella 409304 genus 2 1449 2 1 0 species 168169 Candidatus Ishikawaella capsulata 0 1 1447 genus 1 Kluyvera 579 1 0 272 2 1 271 0 61648 Kluyvera intermedia species 988 2 1 0 Candidatus Riesia 401618 genus 6 0 982 1 species Candidatus Riesia pediculicola 401619 genus 6 Lelliottia 1330545 1 0 870 4 species 61646 Lelliottia amnigena 0 1 513 species 1907578 Lelliottia jeotgali 0 1 192 1 159 0 69220 Lelliottia nimipressuralis species 9511 10 1 0 Klebsiella 570 genus 162 Klebsiella quasivariicola 2026240 species 275 1 0 0 652 1 species Klebsiella variicola 244366 Klebsiella pneumoniae 573 species 3692 1 0 species 1134687 Klebsiella michiganensis 0 1 895 species Klebsiella oxytoca 571 0 1442 1 0 2 602 no rank 2608929 Klebsiella sp. LTGPAF-6F 1905288 species 333 1 0 species Klebsiella sp. M5al 1934254 0 269 1 548 Klebsiella aerogenes species 1 1361 0 Klebsiella quasipneumoniae 1463165 species 430 1 0 Enterobacter 547 genus 236 7231 22 1 0 5542 12 0 354276 species group species Enterobacter cloacae 550 0 2477 1 430 3 0 2757714 no rank 165 1 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 2077137 species 0 132 1 species Enterobacter cloacae complex bacterium 2027919 0 1 133 species 1915310 Enterobacter cloacae complex sp. ECNIH7 species Enterobacter cloacae complex 'Hoffmann cluster IV' 1812935 0 129 1 69218 Enterobacter cancerogenus species 1 178 0 1 149 0 299767 Enterobacter ludwigii species Enterobacter asburiae 61645 species 525 1 0 1129 species 158836 Enterobacter hormaechei 0 1 3 1525 266 1 0 Enterobacter cloacae complex 'Hoffmann cluster III' 1812934 subspecies 0 1 130 subspecies 1296536 Enterobacter xiangfangensis 129 1 0 Enterobacter kobei 208224 species no rank 2608935 0 9 1453 1827481 Enterobacter sp. ODB01 species 1 100 0 Enterobacter sp. E20 1560339 species 117 1 0 0 193 1 species Enterobacter sp. SA187 1914861 0 108 1 species Enterobacter sp. Crenshaw 1977566 Enterobacter sp. 638 399742 species 227 1 0 Enterobacter sp. CRENT-193 2051905 species 178 1 0 1166130 Enterobacter sp. R4-368 species 1 252 0 species Enterobacter sp. HK169 1868135 0 104 1 0 1 174 species 1692238 Enterobacter sp. FY-07 4 479 0 1 620 Shigella 7 genus 622 Shigella dysenteriae species 1 231 0 0 145 1 species Shigella flexneri 623 no rank 2629414 0 1 96 species 1813821 Shigella sp. PAMC 28760 0 1 96 36 genus 413496 Cronobacter 0 1 8 1893 413497 Cronobacter dublinensis species 1 233 0 0 1 166 species 413503 Cronobacter malonaticus 413502 Cronobacter turicensis species 1 275 0 0 307 1 species Cronobacter condimenti 1163710 0 1 257 species 535744 Cronobacter universalis 28141 Cronobacter sakazakii species 1 400 0 219 1 0 Cronobacter muytjensii 413501 species 1 0 7320 3 genus 9 Salmonella 590 species 54736 Salmonella bongori 0 1 1104 0 6207 1 species Salmonella enterica 28901 561 Escherichia 23 genus 5 7657 0 1 species 562 Escherichia coli 0 1 6402 790 1 0 Escherichia albertii 208962 species species Escherichia marmotae 1499973 0 239 1 0 203 1 species Escherichia fergusonii 564 2 227 0 1 1335483 Shimwellia 3 genus 563 Shimwellia blattae species 1 224 0 Leclercia 83654 genus 14 837 4 1 0 341 1 0 Leclercia adecarboxylata 83655 species 2627398 no rank 2 482 0 species 1920116 Leclercia sp. LSNIH3 0 1 213 species 1920114 Leclercia sp. LSNIH1 0 1 269 8 genus 1330547 Kosakonia 0 1 5 1110 Kosakonia oryzae 497725 species 263 1 0 283686 Kosakonia radicincitans species 1 401 0 species Kosakonia cowanii 208223 0 190 1 species Kosakonia sacchari 1158459 0 248 1 Pluralibacter 1330546 genus 3 825 3 1 0 [Enterobacter] lignolyticus 1334193 species 355 1 0 1 467 0 61647 Pluralibacter gergoviae species Raoultella 160674 genus 17 1220 3 1 0 Raoultella planticola 575 species 304 1 0 0 899 1 species Raoultella ornithinolytica 54291 191675 no rank 21 13016 0 clade 84563 0 13016 21 4 genus 1906659 Candidatus Hoaglandella 0 1 2 330 1 326 0 1778263 Candidatus Hoaglandella endobia species 4 1704 0 146507 clade secondary endosymbiont of Ctenarytaina eucalypti 1199245 species 295 1 0 733 2 1 0 Candidatus Hamiltonella 568987 genus 1 0 1 732 species 138072 Candidatus Hamiltonella defensa 0 676 1 species secondary endosymbiont of Heteropsylla cubana 134287 2 604 0 1 1906661 Candidatus Gullanella 2 genus 0 1 602 species 1070130 Candidatus Gullanella endobia 7 6833 0 84564 clade 7 6833 0 1 203804 Candidatus Blochmannia 57 genus 994 1 0 Candidatus Blochmannia chromaiodes 251542 species species Candidatus Blochmannia vafer 251535 0 1282 1 species Candidatus Blochmannia pennsylvanicus 101534 0 951 1 2259 2 0 711328 no rank 1 1244 0 1505597 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus species 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 1 1015 0 203907 Candidatus Blochmannia floridanus species 1 1290 0 0 1 185 genus 1906657 Candidatus Doolittlea endobia 1778262 species 185 1 0 1682492 Candidatus Tachikawaea 5 genus 2 1950 0 1 1410383 Candidatus Tachikawaea gelatinosa species 1 1945 0 0 661 1 clade 199891 species 1835721 secondary endosymbiont of Trabutina mannipara 0 1 661 1 genus 1906660 Candidatus Mikella 0 1 2 749 species Candidatus Mikella endobia 1778264 0 748 1 genus 1048757 0 1 224 0 224 1 species Candidatus Moranella endobia 1048758 5200 14 1 0 Citrobacter 544 genus 144 1 666 0 67824 Citrobacter farmeri species 35703 Citrobacter amalonaticus species 1 568 0 2644389 no rank 441 2 0 261 1 0 Citrobacter sp. FDAARGOS_156 1702170 species 180 1 0 Citrobacter sp. CFNIH10 1920110 species species group 1344959 0 7 2789 Citrobacter freundii complex sp. CFNIH3 2077147 species 201 1 0 0 1 417 species 67827 Citrobacter werkmanii 57706 Citrobacter braakii species 1 408 0 species 2077149 Citrobacter freundii complex sp. CFNIH9 0 1 177 0 1 193 species 2066049 Citrobacter freundii complex sp. CFNIH2 0 1 239 species 2077148 Citrobacter freundii complex sp. CFNIH4 1 1154 0 546 Citrobacter freundii species 0 1 267 species 67825 Citrobacter rodentium 545 Citrobacter koseri species 1 325 0 15933 14 1 0 Hafniaceae 1903412 family 13 65 genus 635 Edwardsiella 0 1 8 14281 species 1821960 Edwardsiella anguillarum 0 1 425 388 1 0 Edwardsiella ictaluri 67780 species 0 12065 1 species Edwardsiella tarda 636 species 1263550 Edwardsiella piscicida 0 1 336 93378 Edwardsiella hoshinae species 1 232 0 2676541 no rank 770 2 0 1578828 Edwardsiella sp. EA181011 species 1 415 0 355 1 0 Edwardsiella sp. LADL05-105 1650654 species 1 0 329 2 genus 12 Obesumbacterium 82982 0 317 1 species Obesumbacterium proteus 82983 0 1 3 1310 17 genus 568 Hafnia 0 942 1 species Hafnia alvei 569 no rank 2621980 0 1 351 1848580 Hafnia sp. CBA7124 species 1 351 0 1 0 19684 38 family 43 Yersiniaceae 1903411 629 Yersinia 158 genus 13 9712 0 1 29483 Yersinia aldovae species 1 520 0 0 1 552 species 29485 Yersinia rohdei species Yersinia kristensenii 28152 0 577 1 1 670 0 29486 Yersinia ruckeri species 1649845 species group 3 2924 0 367190 Yersinia similis species 1 798 0 632 Yersinia pestis species 1 958 0 633 Yersinia pseudotuberculosis species 1 1168 0 409 1 0 2653513 no rank 0 1 409 species 1839800 Yersinia sp. FDAARGOS_228 263819 Yersinia aleksiciae species 1 294 0 1 1837 0 630 Yersinia enterocolitica species Yersinia intermedia 631 species 456 1 0 species Yersinia frederiksenii 29484 0 1315 1 1 0 322 2 genus 3 Gibbsiella 929812 0 319 1 species Gibbsiella quercinecans 929813 0 1 2 321 7 genus 1745211 Chania species Chania multitudinisentens 1639108 0 314 1 1 0 8347 16 genus 226 Serratia 613 2616 8 0 2647522 no rank 1 383 0 104623 Serratia sp. ATCC 39006 species species Serratia sp. SSNIH1 1758196 0 301 1 0 1 290 species 2033438 Serratia sp. MYb239 Serratia sp. AS13 768493 species 208 1 0 442 1 0 Serratia sp. FS14 1327989 species 294 1 0 Serratia sp. FGI94 671990 species Serratia sp. SCBI 488142 species 490 1 0 1 208 0 768490 Serratia sp. AS12 species 676 1 0 Serratia plymuthica 82996 species 2371 1 0 Serratia marcescens 615 species 0 371 1 species Serratia liquefaciens 614 0 390 1 species Serratia rubidaea 61652 Serratia fonticola 47917 species 1164 1 0 species Serratia ficaria 61651 0 338 1 28151 Serratia proteamaculans species 1 195 0 4 939 0 1 34037 Rahnella 11 genus 0 619 2 no rank 2635087 Rahnella sp. Y9602 741091 species 294 1 0 325 1 0 Rouxiella sp. ERMR1:05 1805933 species 1 309 0 34038 Rahnella aquatilis species 1903416 family 453 2 0 453 2 1 0 Pragia 82984 genus 22 Pragia fontium 82985 species 431 1 0 7596 20 1 0 Pectobacteriaceae 1903410 family 16 391 2 1 0 Brenneria 71655 genus 4 1109412 Brenneria goodwinii species 1 387 0 0 1 6 3181 82 genus 122277 Pectobacterium Pectobacterium polaris 2042057 species 313 1 0 Pectobacterium atrosepticum 29471 species 350 1 0 0 938 1 species Pectobacterium carotovorum 554 0 1118 1 species Pectobacterium parmentieri 1905730 1 380 0 55208 Pectobacterium wasabiae species Dickeya 204037 genus 59 2355 6 1 0 species Dickeya solani 1089444 0 471 1 1003 1 0 Dickeya zeae 204042 species 1 294 0 204038 Dickeya dadantii species Dickeya fangzhongdai 1778540 species 272 1 0 1 256 0 204039 Dickeya dianthicola species 0 1 5 1653 42 genus 84565 Sodalis 492 1 0 Candidatus Sodalis pierantonius 1486991 species species 1929246 Sodalis endosymbiont of Henestaris halophilus 0 1 495 378 1 0 Sodalis praecaptivus 1239307 species Sodalis glossinidius 63612 species 246 1 0 1240482 Orbales 7 order 6 3291 0 1 0 1 5 3284 18 family 1240483 Orbaceae 1 0 1475 2 genus 7 Frischella 1335631 1468 1 0 Frischella perrara 1267021 species Gilliamella 1193503 genus 13 1791 2 1 0 Gilliamella apicola 1196095 species 1778 1 0 0 1 12 4704 5 class 1553900 Oligoflexia order 9 Bdellovibrionales 213481 1 0 1904 5 4 1895 0 1 213483 Bdellovibrionaceae 10 family 3 1885 0 1 958 Bdellovibrio 5 genus 0 1 625 species 453816 Bdellovibrio exovorus 1255 1 0 Bdellovibrio bacteriovorus 959 species 6 2795 0 1 2024979 Bacteriovoracales 16 order 263369 family 2 797 0 1 0 797 2 genus 12 Bacteriovorax 146784 1 785 0 960 Bacteriovorax stolpii species 1 0 1982 3 family 8 Halobacteriovoraceae 1652132 genus 2 Halobacteriovorax 1652133 1 0 1974 2 species Halobacteriovorax marinus 97084 0 1972 1 568 750667 0 1 28211 Alphaproteobacteria 449 class 4 849 0 1 255473 Parvularculales 3 order 3 846 0 1 255474 Parvularculaceae 10 family 2 836 0 1 208215 Parvularcula 29 genus species Parvularcula bermudensis 208216 0 807 1 204457 Sphingomonadales 164 order 81 32614 0 1 family 113 Erythrobacteraceae 335929 1 0 7425 22 0 252 1 genus 2800685 0 1 252 species 543877 Altererythrobacter marensis 2800681 genus 2 1552 0 species Erythrobacter gangjinensis 502682 0 697 1 species 1648404 Erythrobacter atlanticus 0 1 855 2800686 genus 2 455 0 238 1 0 Altererythrobacter dongtanensis 692370 species 1 217 0 1982042 Altererythrobacter mangrovi species 1855416 genus 2 511 0 species 192812 Erythrobacter flavus 0 1 279 Erythrobacter seohaensis 266951 species 232 1 0 3 668 0 1 1295327 Croceicoccus 21 genus 0 285 1 species Croceicoccus naphthovorans 1348774 362 1 0 Croceicoccus marinus 450378 species 6 2137 0 2800788 no rank 1041 Erythrobacter 151 genus 3 1225 0 1 0 1 328 species 1112 Porphyrobacter neustonensis 39960 Erythrobacter litoralis species 1 746 0 0 1 3 912 62 genus 1111 Porphyrobacter 2 850 0 2683265 no rank 1 426 0 1896196 Porphyrobacter sp. LM 6 species 2023229 Porphyrobacter HT-58-2 species 1 424 0 2800682 genus 1 608 0 608 1 0 Altererythrobacter namhicola 645517 species 0 1 4 1129 133 genus 361177 Altererythrobacter 1 316 0 361183 Altererythrobacter epoxidivorans species 0 323 1 species Altererythrobacter atlanticus 1267766 357 1 0 Altererythrobacter ishigakiensis 476157 species 41297 Sphingomonadaceae 209 family 58 25025 0 1 24 genus 1434046 Sphingorhabdus 0 1 3 1144 2614947 no rank 1120 2 0 0 607 1 species Sphingorhabdus sp. M41 1806885 0 513 1 species Sphingorhabdus sp. YGSMI21 2077182 2 1634 0 1 541 Zymomonas 11 genus 1 1623 0 542 Zymomonas mobilis species 150203 Blastomonas 7 genus 2 488 0 1 0 1 481 no rank 2626550 1842535 Blastomonas sp. RAC04 species 1 481 0 1 0 1829 5 genus 78 Novosphingobium 165696 0 409 1 no rank 2644732 0 1 409 species 702113 Novosphingobium sp. PP1Y 48935 Novosphingobium aromaticivorans species 1 328 0 571 1 0 Novosphingobium resinovorum 158500 species species Novosphingobium pentaromativorans 205844 0 443 1 genus 215 Sphingomonas 13687 1 0 7454 15 196159 no rank 2829 6 0 1 419 0 1327635 Sphingomonas sp. Cra20 species species Sphingomonas sp. KC8 1030157 0 445 1 0 343 1 species Sphingomonas sp. LM7 1938607 1961362 Sphingomonas sp. NIC1 species 1 331 0 Sphingomonas sp. LK11 1390395 species 831 1 0 Sphingomonas sp. MM-1 745310 species 460 1 0 0 493 1 species Sphingomonas panacis 1560345 1 573 0 1549858 Sphingomonas taxi species 1 431 0 152682 Sphingomonas melonis species 444 1 0 Sphingomonas koreensis 93064 species 0 485 1 species Sphingomonas hengshuiensis 1609977 0 1 624 species 397260 Sphingomonas sanxanigenens 1 0 1360 2 species 688 Sphingomonas wittichii 160791 0 672 1 strain Sphingomonas sp. DC-6 1283312 1 0 302 2 genus 4 Citromicrobium 72173 0 1 298 no rank 2630544 species 1634516 Citromicrobium sp. JL477 0 1 298 genus 1649486 0 494 1 species 1850238 Rhizorhabdus dicambivorans 0 1 494 0 1 10 5003 99 genus 165697 Sphingopyxis 33050 Sphingopyxis macrogoltabida species 1 829 0 404 1 0 Sphingopyxis terrae 33052 species 1515612 Sphingopyxis fribergensis species 1 398 0 no rank 2614943 0 2418 4 species 1357916 Sphingopyxis sp. QXT-31 0 1 471 1 340 0 292913 Sphingopyxis sp. 113P3 species 1 464 0 1866325 Sphingopyxis sp. MG species 0 1 1143 species 1913578 Sphingopyxis sp. LPB0140 1 461 0 267128 Sphingopyxis granuli species 394 1 0 Sphingopyxis alaskensis 117207 species genus 178 Sphingobium 165695 1 0 5456 15 0 326 1 species Sphingobium japonicum 332056 species 46429 Sphingobium chlorophenolicum 0 1 318 species 1332080 Sphingobium baderi 0 1 320 329 1 0 Sphingobium indicum 332055 species species Sphingobium yanoikuyae 13690 0 680 1 2611147 no rank 2252 6 0 407020 Sphingobium sp. MI1205 species 1 292 0 417 1 0 Sphingobium sp. RAC03 1843368 species 454 1 0 Sphingobium sp. TKS 1315974 species species 627192 Sphingobium sp. SYK-6 0 1 444 0 1 270 species 1855519 Sphingobium sp. EP60837 species Sphingobium sp. YBL2 484429 0 375 1 Sphingobium hydrophobicum 1673076 species 414 1 0 Sphingobium cloacae 120107 species 328 1 0 species Sphingobium herbicidovorans 76947 0 311 1 genus 2709685 0 560 1 species Sphingorhabdus flavimaris 266812 0 560 1 genus 2685927 0 452 1 Sphingomonas sp. JJ-A5 1921510 species 452 1 0 order 166 Rhodobacterales 204455 1 0 52892 91 90 52726 0 1 31989 Rhodobacteraceae 792 family 53945 Octadecabacter 36 genus 4 3503 0 1 species 1458307 Octadecabacter temperatus 0 1 704 species 1217908 Octadecabacter antarcticus 0 1 1562 1 1201 0 53946 Octadecabacter arcticus species 2211641 genus 980 1 0 1 980 0 245188 Loktanella vestfoldensis species 690 2 1 0 Leisingera 191028 genus 3 species Leisingera methylohalidivorans 133924 0 687 1 2 834 0 1 74032 Antarctobacter 4 genus Antarctobacter heliothermus 74033 species 830 1 0 0 692 1 genus 159345 Roseibacterium elongatum 159346 species 692 1 0 0 1 2 983 1 genus 74030 Roseovarius Roseovarius mucosus 215743 species 982 1 0 genus 1649279 0 1 749 749 1 0 Ruegeria mobilis 379347 species Pelagibaca 360528 genus 11 881 2 1 0 0 1 870 species 1250539 Pelagibaca abyssi genus 20 Ruegeria 97050 1 0 1648 3 89184 Ruegeria pomeroyi species 1 1006 0 0 1 622 no rank 2625375 species 292414 Ruegeria sp. TM1040 0 1 622 0 2 1 genus Thalassococcus 436357 29 genus 2433 Roseobacter 0 1 3 2188 species 2434 Roseobacter denitrificans 0 1 1010 42443 Roseobacter litoralis species 1 1149 0 Thioclava 285107 genus 4 523 2 1 0 1915078 Thioclava nitratireducens species 1 519 0 0 1430 2 genus 263377 species Thiobacimonas profunda 1229727 0 684 1 2640570 no rank 746 1 0 0 1 746 species 1792508 Yangia sp. CCB-MM3 1579315 genus 1175 1 0 1175 1 0 Halocynthiibacter arcticus 1579316 species 2083 4 1 0 Labrenzia 478070 genus 116 0 1295 2 no rank 2648686 615 1 0 Labrenzia sp. CP4 1674922 species species Labrenzia sp. VG12 2021862 0 680 1 1 672 0 187304 Labrenzia aggregata species 1 0 653 2 genus 9 Pannonibacter 227873 species 121719 Pannonibacter phragmitetus 0 1 644 genus 1 Rhodobaca 119541 1 0 899 2 species 441209 Rhodobaca barguzinensis 0 1 898 1 0 650 2 genus 4 Marivivens 1759396 2622455 no rank 646 1 0 646 1 0 Marivivens sp. JLT3646 1920883 species 2 genus 1284657 Planktomarina 0 1 2 1947 0 1 1945 species 1284658 Planktomarina temperata 0 1 5 6129 120 genus 302485 Phaeobacter 712 1 0 Phaeobacter porticola 1844006 species species 60890 Phaeobacter gallaeciensis 0 1 1604 0 1 2290 species 221822 Phaeobacter inhibens species Phaeobacter piscinae 1580596 0 1403 1 0 1 4 2316 39 genus 34008 Rhodovulum 1209 2 0 2631432 no rank 1 544 0 1564506 Rhodovulum sp. P5 species 0 1 665 species 308754 Rhodovulum sp. MB263 species 35806 Rhodovulum sulfidophilum 0 1 1068 0 1 6 genus 245186 Loktanella 1609958 Confluentimicrobium 7 genus 2 852 0 1 2643318 no rank 845 1 0 species 1609966 Confluentimicrobium sp. EMB200-NS6 0 1 845 777 2 1 0 Tateyamaria 299261 genus 2 0 775 1 species Tateyamaria omphalii 299262 0 1 3 1114 18 genus 92944 Ketogulonicigenium 92947 Ketogulonicigenium robustum species 1 456 0 92945 Ketogulonicigenium vulgare species 1 640 0 8 genus 60136 Sulfitobacter 0 1 3 1681 0 1 776 no rank 196795 0 1 776 species 1917485 Sulfitobacter sp. AM1-D1 1 897 0 1402135 Sulfitobacter pseudonitzschiae species 750 2 1 0 Jannaschia 188905 genus 1 0 749 1 no rank 2645469 Jannaschia sp. CCS1 290400 species 749 1 0 1 0 3224 5 genus 24 Celeribacter 875170 species 1397108 Celeribacter marinus 0 1 810 0 992 1 species Celeribacter manganoxidans 1411902 0 1 759 species 1208324 Celeribacter indicus 1 639 0 1758178 Celeribacter ethanolicus species genus 58842 0 1 704 704 1 0 2624628 no rank Sagittula sp. P11 2009329 species 704 1 0 genus 30 Rhodobacter 1060 1 0 3287 5 196779 no rank 2 1296 0 Rhodobacter sp. LPB0142 1850250 species 746 1 0 550 1 0 Rhodobacter sp. CZR27 2033869 species 1 566 0 1061 Rhodobacter capsulatus species 0 1 1395 species 1063 Rhodobacter sphaeroides 5 genus 309512 Dinoroseobacter 0 1 2 657 1 652 0 215813 Dinoroseobacter shibae species 1169 2 0 58840 no rank 0 1 693 species 1904441 Rhodobacteraceae bacterium 476 1 0 Rhodobacteraceae bacterium QY30 2033435 species 12 genus 367771 Marinovum 0 1 2 967 0 1 955 species 42444 Marinovum algicola 265 Paracoccus 121 genus 9 5080 0 1 species 34003 Paracoccus aminophilus 0 1 578 720 1 0 Paracoccus yeei 147645 species 0 505 1 species Paracoccus contaminans 1945662 567 1 0 Paracoccus sp. CBA4604 2065379 species species 1077935 Paracoccus zhejiangensis 0 1 635 species Paracoccus aminovorans 34004 0 535 1 species Paracoccus denitrificans 266 0 649 1 246570 no rank 1 770 0 1 770 0 1529068 Paracoccus sp. BM15 species genus 10 Defluviimonas 1097466 1 0 711 2 1 701 0 1335048 Defluviimonas alba species 212 123463 0 1 356 Rhizobiales 581 order 1 0 786 3 family 3 Rhodobiaceae 119043 0 1 2 783 22 genus 256616 Parvibaculum 1 761 0 256618 Parvibaculum lavamentivorans species 1 0 9689 15 family 28 Methylobacteriaceae 119045 0 1 2 565 13 genus 186650 Microvirga 552 1 0 Microvirga ossetica 1882682 species 3527 3 0 2282523 genus 969 1 0 Methylobacterium populi 223967 species 0 1 467 species 29429 Methylobacterium zatmanii 0 1 2091 species 408 Methylobacterium extorquens 0 1 9 5569 205 genus 407 Methylobacterium 0 1 812 species 270351 Methylobacterium aquaticum Methylobacterium radiotolerans 31998 species 728 1 0 Methylobacterium phyllosphaerae 418223 species 490 1 0 0 1 510 species 334852 Methylobacterium oryzae 0 2096 3 no rank 2615210 0 1 668 species 1479019 Methylobacterium sp. C1 species Methylobacterium sp. AMS5 925818 0 517 1 0 1 911 species 426117 Methylobacterium sp. 4-46 species Methylobacterium nodulans 114616 0 728 1 Methylocystaceae 31993 family 10 1739 6 1 0 Methylocystis 133 genus 48 998 3 1 0 0 482 1 species Methylocystis bryophila 655015 no rank 2625913 0 468 1 Methylocystis sp. SC2 187303 species 468 1 0 2 731 0 1 425 Methylosinus 24 genus species 426 Methylosinus trichosporium 0 1 707 32 family 772 Bartonellaceae 0 1 18 31796 593 genus 773 Bartonella 0 1 17 31764 Bartonella clarridgeiae 56426 species 2074 1 0 species 1318743 Bartonella ancashensis 0 1 1729 1 1831 0 33045 Bartonella grahamii species 1144 1 0 Bartonella australis 388640 species Bartonella tribocorum 85701 species 1797 1 0 species Bartonella quintana 803 0 1717 1 774 Bartonella bacilliformis species 1 2343 0 1 1749 0 1686310 Bartonella apis species 2645622 no rank 6 13246 0 Bartonella sp. JB63 1933907 species 2237 1 0 1 2160 0 1933910 Bartonella sp. A1379B species 0 1 2290 species 1933904 Bartonella sp. WD16.2 1 2212 0 515256 Bartonella sp. 1-1C species 0 2236 1 species Bartonella sp. JB15 1933906 2111 1 0 Bartonella sp. Raccoon60 1933912 species 1 1743 0 38323 Bartonella henselae species species Bartonella vinsonii 33047 0 1798 1 0 1 20 5300 19 family 118882 Brucellaceae 63 genus 528 Ochrobactrum 0 1 5 3308 Ochrobactrum pituitosum 571256 species 863 1 0 1 1254 0 419475 Ochrobactrum pseudogrignonense species 271865 Ochrobactrum sp. A44 species 1 642 0 Ochrobactrum anthropi 529 species 486 1 0 genus 674 Brucella 234 1 0 1973 14 1 72 0 235 Brucella abortus species 0 49 1 species Brucella microti 444163 29461 Brucella suis species 1 172 0 236 Brucella ovis species 1 41 0 512 4 0 2632610 no rank Brucella sp. 09RB8471 1149952 species 163 1 0 species 1891098 Brucella sp. 2002734562 0 1 22 149 1 0 Brucella sp. 09RB8910 1844051 species 1 178 0 1885919 Brucella sp. 141012304 species 29459 Brucella melitensis species 1 64 0 Brucella vulpis 981386 species 122 1 0 88 1 0 Brucella ceti 120577 species species 120576 Brucella pinnipedialis 0 1 87 36855 Brucella canis species 1 92 0 5 1152 0 1 45404 Beijerinckiaceae 4 family 2 506 0 1 120652 Methylocella 10 genus 199596 Methylocella silvestris species 1 496 0 11 genus 532 Beijerinckia 0 1 2 642 Beijerinckia indica 533 species 631 1 0 1959 6 0 119042 no rank 1 0 739 2 genus 20 Hartmannibacter 1572860 0 1 719 species 1482074 Hartmannibacter diazotrophicus 62 genus 1484898 Methyloceanibacter 0 1 2 619 1384459 Methyloceanibacter caenitepidi species 1 557 0 14 genus 1734920 Pseudorhodoplanes 0 1 2 601 587 1 0 Pseudorhodoplanes sinuspersici 1235591 species 0 1 7 1905 26 family 335928 Xanthobacteraceae 593 2 1 0 Starkeya 152053 genus 7 586 1 0 Starkeya novella 921 species 563 2 1 0 Azorhizobium 6 genus 18 species Azorhizobium caulinodans 7 0 545 1 723 2 1 0 Xanthobacter 279 genus 13 0 1 710 species 280 Xanthobacter autotrophicus 82115 Rhizobiaceae 172 family 55 32147 0 1 no rank 227292 0 10 5840 80 genus 28105 Sinorhizobium 0 1 7 4776 no rank 2613772 0 996 2 0 453 1 species Sinorhizobium sp. CCBAU 05631 794846 543 1 0 Sinorhizobium sp. RAC02 1842534 species 0 1 490 species 110321 Sinorhizobium medicae Sinorhizobium meliloti 382 species 1177 1 0 663276 species group 1483 1 0 1 1483 0 380 Sinorhizobium fredii species 1 550 0 194963 Sinorhizobium americanum species genus 7 Ensifer 106591 1 0 1064 3 1 404 0 716925 Ensifer sojae species 653 1 0 Ensifer adhaerens 106592 species 323620 Shinella 3 genus 2 746 0 1 2643062 no rank 743 1 0 743 1 0 Shinella sp. HZN7 879274 species 34019 Liberibacter 81 genus 6 8476 0 1 species Candidatus Liberibacter solanacearum 556287 0 1474 1 0 2142 1 species Liberibacter crescens 1273132 34020 Candidatus Liberibacter africanus species 1 1454 0 species 34021 Candidatus Liberibacter asiaticus 0 1 1402 1923 1 0 Candidatus Liberibacter americanus 309868 species 227290 no rank 36 16913 0 379 Rhizobium 738 genus 27 11616 0 1 990 1 0 Rhizobium phaseoli 396 species 0 1 1273 species 29449 Rhizobium etli 2613769 no rank 21 4674 0 308 1 0 Rhizobium sp. Kim5 2020311 species 3 1 0 Rhizobium sp. N871 1703968 species 1 312 0 1301032 Rhizobium sp. IE4771 species 1703964 Rhizobium sp. N621 species 1 1 0 1 443 0 2048897 Rhizobium sp. NXC24 species 1 1 0 Rhizobium sp. N6212 1703965 species 1 423 0 2028343 Rhizobium sp. 10195 species 0 1 329 species 2020312 Rhizobium sp. CIAT894 0 1 4 species 1703962 Rhizobium sp. N1341 0 1 4 species 1703967 Rhizobium sp. N741 Rhizobium sp. N1314 1703961 species 76 1 0 419 1 0 Rhizobium sp. S41 1869170 species 2 1 0 Rhizobium sp. N113 1703960 species species 1981173 Rhizobium sp. NXC14 0 1 270 species Rhizobium sp. ACO-34A 1571470 0 406 1 1 345 0 1914541 Rhizobium sp. Y9 species 76 1 0 Rhizobium sp. N731 1703966 species 1 369 0 424182 Rhizobium sp. IRBG74 species 0 378 1 species Rhizobium sp. N324 1703969 Rhizobium sp. NT-26 1125847 species 403 1 0 0 102 1 species Rhizobium sp. TAL182 2020313 2743 1 0 Rhizobium leguminosarum 384 species species Rhizobium tropici 398 0 379 1 1 819 0 56730 Rhizobium gallicum species 2 707 0 1 1525371 Neorhizobium 14 genus Neorhizobium galegae 399 species 693 1 0 7 4590 0 1 357 Agrobacterium 52 genus 2630 2 0 1183400 species group Agrobacterium tumefaciens 358 species 2237 1 0 0 1 393 species 1176649 Agrobacterium fabrum 2632611 no rank 2 853 0 861208 Agrobacterium sp. H13-3 species 1 373 0 1 480 0 1842536 Agrobacterium sp. RAC06 species 373 Agrobacterium vitis species 1 648 0 0 1 407 species 359 Agrobacterium rhizogenes 0 1 20 9551 51 family 69277 Phyllobacteriaceae 68287 Mesorhizobium 188 genus 9 6139 0 1 2066070 Mesorhizobium japonicum species 1 767 0 0 1 988 species 381 Mesorhizobium loti Mesorhizobium australicum 536018 species 587 1 0 614 1 0 Mesorhizobium opportunistum 593909 species species Mesorhizobium sp. B7 1670800 0 637 1 325217 no rank 1 787 0 species Mesorhizobium sp. WSM1497 278153 0 787 1 Mesorhizobium amorphae 71433 species 622 1 0 0 949 1 species Mesorhizobium ciceri 39645 0 1 2 834 11 genus 274591 Hoeflea no rank 2614931 0 1 823 Hoeflea sp. IMCC20628 1620421 species 823 1 0 Chelativorans 449972 genus 51 463 2 1 0 0 412 1 no rank 2643807 412 1 0 Chelativorans sp. BNC1 266779 species 10 genus 31988 Aminobacter 0 1 2 635 species 83263 Aminobacter aminovorans 0 1 625 0 1 2 755 21 genus 245876 Nitratireductor species Nitratireductor basaltis 472175 0 734 1 1 0 674 2 genus 13 Phyllobacterium 28100 1867719 Phyllobacterium zundukense species 1 661 0 6594 19 1 0 Hyphomicrobiaceae 45401 family 70 0 1 2 629 15 genus 59282 Blastochloris 614 1 0 Blastochloris viridis 1079 species 66 genus 46913 Devosia 0 1 4 1960 3 1894 0 196773 no rank species 1736675 Devosia sp. A16 0 1 682 0 579 1 species Devosia sp. I507 2083786 species 1643450 Devosia sp. H5989 0 1 633 1068 Rhodomicrobium 10 genus 2 397 0 1 species Rhodomicrobium vannielii 1069 0 387 1 0 1 2 671 15 genus 29407 Rhodoplanes no rank 2619116 0 656 1 656 1 0 Rhodoplanes sp. Z2-YC6860 674703 species 81 Hyphomicrobium 67 genus 4 1816 0 1 53399 Hyphomicrobium denitrificans species 1 605 0 1 368 0 1427356 Hyphomicrobium nitrativorans species 2619925 no rank 1 776 0 717785 Hyphomicrobium sp. MC1 species 1 776 0 608 2 1 0 Pelagibacterium 1082930 genus 13 Pelagibacterium halotolerans 531813 species 595 1 0 7 genus 119044 Filomicrobium 0 1 2 443 1608628 Candidatus Filomicrobium marinum species 1 436 0 7 family 2036754 Chelatococcaceae 0 1 4 1449 57 genus 28209 Chelatococcus 0 1 3 1442 638 1 0 Chelatococcus daeguensis 444444 species no rank 2638111 0 1 747 1 747 0 1702325 Chelatococcus sp. CO-6 species 26 16541 0 1 41294 Bradyrhizobiaceae 112 family Nitrobacter 911 genus 19 846 3 1 0 0 1 444 species 912 Nitrobacter hamburgensis 383 1 0 Nitrobacter winogradskyi 913 species 11 8027 0 1 374 Bradyrhizobium 249 genus 2631580 no rank 6 4245 0 species 115808 Bradyrhizobium sp. ORS 285 0 1 609 0 1 637 species 376 Bradyrhizobium sp. species 288000 Bradyrhizobium sp. BTAi1 0 1 734 744 1 0 Bradyrhizobium sp. SK17 2057741 species species 1223566 Bradyrhizobium sp. CCGE-LA001 0 1 634 887 1 0 Bradyrhizobium sp. ORS 278 114615 species 0 1 609 species 1274631 Bradyrhizobium icense species Bradyrhizobium diazoefficiens 1355477 0 1160 1 0 1075 1 species Bradyrhizobium japonicum 375 0 689 1 species Bradyrhizobium oligotrophicum 44255 2 522 0 1 1649510 Variibacter 2 genus 0 520 1 species Variibacter gotjawalensis 1333996 0 1 2 476 7 genus 40136 Oligotropha 469 1 0 Oligotropha carboxidovorans 40137 species Bosea 85413 genus 101 2501 5 1 0 630 1 0 Bosea vaviloviae 1526658 species 2653178 no rank 1770 3 0 0 485 1 species Bosea sp. PAMC 26642 1792307 641 1 0 Bosea sp. AS-1 2015316 species 1842539 Bosea sp. RAC05 species 1 644 0 47 genus 1073 Rhodopseudomonas 0 1 2 4057 4010 1 0 Rhodopseudomonas palustris 1076 species family 10 Aurantimonadaceae 255475 1 0 2274 7 1 0 1724 4 genus 68 Martelella 293088 387 1 0 Martelella endophytica 1486262 species 1 668 0 293089 Martelella mediterranea species 0 601 1 no rank 2629616 0 1 601 species 686597 Martelella sp. AD-3 genus 22 Aureimonas 414371 1 0 540 2 no rank 2615206 0 518 1 species Aureimonas sp. AU20 1349819 0 518 1 52412 55 1 0 Rickettsiales 766 order 60 0 1 23 25759 41 family 942 Anaplasmataceae 1205 4 1 0 Anaplasma 768 genus 14 0 293 1 species Anaplasma marginale 770 species group 106179 0 611 1 948 Anaplasma phagocytophilum species 1 611 0 Anaplasma centrale 769 species 287 1 0 952 tribe 8 11364 0 953 Wolbachia 255 genus 8 11364 0 1 2640676 no rank 7 11109 0 species 77038 Wolbachia endosymbiont of Drosophila simulans 0 1 3079 Wolbachia endosymbiont of Brugia malayi 80849 species 1196 1 0 1290 1 0 Wolbachia endosymbiont of Cimex lectularius 246273 species species 100901 Wolbachia endosymbiont of Onchocerca ochengi 0 1 1461 species 66084 Wolbachia sp. wRi 0 1 1357 species 163164 Wolbachia endosymbiont of Drosophila melanogaster 0 1 1303 species Wolbachia endosymbiont of Onchocerca volvulus 77551 0 1423 1 22 genus 33993 Neorickettsia 0 1 4 1808 951 Neorickettsia sennetsu species 1 569 0 33994 Neorickettsia helminthoeca species 1 538 0 species 950 Neorickettsia risticii 0 1 679 genus 103 Ehrlichia 943 1 0 11341 6 106181 no rank 1 2058 0 1 2058 0 391036 Ehrlichia sp. HF species species group 106178 0 4 9180 2472 1 0 Ehrlichia ruminantium 779 species species Ehrlichia muris 35795 0 2071 1 Ehrlichia chaffeensis 945 species 2281 1 0 0 2356 1 species Ehrlichia canis 944 1 0 1392 3 family 2 Candidatus Midichloriaceae 1328881 18 genus 411566 Candidatus Midichloria 0 1 2 1390 species 234827 Candidatus Midichloria mitochondrii 0 1 1372 no rank 1699067 0 1 3878 species 1528098 Rickettsiales bacterium Ac37b 0 1 3878 27 21323 0 1 775 Rickettsiaceae 33 family 2 1328 0 1 2115980 Candidatus Phycorickettsia 2 genus species Candidatus Phycorickettsia trachydisci 2115978 0 1326 1 0 24 19962 tribe 33988 780 Rickettsia 1461 genus 23 16489 0 1 0 6002 17 species group 114277 113 1 0 Rickettsia africae 35788 species species 33991 Rickettsia montanensis 0 1 135 787 Rickettsia australis species 1 1050 0 Rickettsia amblyommatis 33989 species 295 1 0 226665 Rickettsia heilongjiangensis species 1 197 0 Rickettsia rickettsii 783 species 166 1 0 681 1 0 Rickettsia monacensis 109232 species 0 1 777 species 786 Rickettsia akari Rickettsia conorii 781 species 93 1 0 0 1 107 species 35792 Rickettsia parkeri species Rickettsia peacockii 47589 0 446 1 153 1 0 Rickettsia philipii 1105106 species 0 1 1023 species 42862 Rickettsia felis 313 1 0 Rickettsia rhipicephali 33992 species species 35791 Rickettsia massiliae 0 1 204 Rickettsia slovaca 35794 species 55 1 0 194 1 0 Rickettsia japonica 35790 species species group 1129742 0 3423 2 33990 Rickettsia bellii species 1 2040 0 Rickettsia canadensis 788 species 1383 1 0 1796 1 0 114295 no rank 0 1796 1 species Rickettsia endosymbiont of Bemisia tabaci 337479 species group 114292 0 2 3807 species Rickettsia prowazekii 782 0 1929 1 species Rickettsia typhi 785 0 1878 1 1 3473 0 69474 genus 3473 1 0 Orientia tsutsugamushi 784 species order 11 Holosporales 1921002 1 0 4672 9 0 1 2 1646 8 family 44746 Holosporaceae 0 1638 1 no rank 204454 0 1 1638 species 86106 endosymbiont of Acanthamoeba sp. UWC8 1880 3 1 0 Caedimonadaceae 2100208 family 17 1863 2 1 0 Candidatus Nucleicultrix 1509243 genus 8 species Candidatus Nucleicultrix amoebiphila 1509244 0 1855 1 1777752 Candidatus Paracaedibacteraceae 7 family 3 1135 0 1 1 0 1128 2 genus 14 Candidatus Paracaedibacter 1521255 0 1114 1 species Candidatus Paracaedibacter acanthamoebae 91604 2800059 order 2 788 0 family 2800061 0 2 788 1 0 788 2 genus 28 Maricaulis 74317 Maricaulis maris 74318 species 760 1 0 Pelagibacterales 54526 order 67 426610 9 1 0 Pelagibacteraceae 1655514 family 115 401645 6 1 0 no rank 1655516 0 2 200143 1 18709 0 744985 alpha proteobacterium HIMB59 species species 859653 alpha proteobacterium HIMB5 0 1 181434 42 genus 198251 Candidatus Pelagibacter 0 1 3 201387 no rank 2647897 0 25587 1 Candidatus Pelagibacter sp. IMCC9063 1002672 species 25587 1 0 species Candidatus Pelagibacter ubique 198252 0 175758 1 24898 2 1 0 Candidatus Fonsibacter 2045213 genus 37 1 24861 0 1925548 Candidatus Fonsibacter ubiquis species 1 0 32009 67 order 179 Rhodospirillales 204441 19099 31 1 0 Rhodospirillaceae 41295 family 219 0 1 5 3324 93 genus 13134 Magnetospirillum 84159 Magnetospirillum magneticum species 1 731 0 no rank 2617991 0 1539 2 species Magnetospirillum sp. ME-1 1639348 0 778 1 1 761 0 1663591 Magnetospirillum sp. XM-1 species species 55518 Magnetospirillum gryphiswaldense 0 1 961 2 952 0 1 171436 Tistrella 14 genus 0 938 1 species Tistrella mobilis 171437 0 1 2 846 12 genus 1543705 Nitrospirillum species Nitrospirillum amazonense 28077 0 834 1 Niveispirillum 1543704 genus 10 749 2 1 0 species 1612173 Niveispirillum cyanobacteriorum 0 1 739 0 1 3 2265 26 genus 168934 Thalassospira 0 1 1067 species 220697 Thalassospira xiamenensis 2048283 Thalassospira sp. CSC3H3 species 1 1172 0 genus 6 Pararhodospirillum 1612157 1 0 519 2 0 513 1 species Pararhodospirillum photometricum 1084 93 genus 191 Azospirillum 0 1 5 4454 Azospirillum brasilense 192 species 1392 1 0 species 193 Azospirillum lipoferum 0 1 1670 0 867 1 species Azospirillum thiophilum 528244 species 1226968 Azospirillum humicireducens 0 1 432 1 0 686 2 genus 10 Magnetospira 1182780 676 1 0 2685734 no rank 1288970 Magnetospira sp. QH-2 species 1 676 0 0 1 2 534 5 genus 1804663 Haematospirillum 0 529 1 species Haematospirillum jordaniae 1549855 2 3142 0 1 1263978 Candidatus Endolissoclinum 7 genus 3135 1 0 Candidatus Endolissoclinum faulkneri 1263979 species genus 27 Rhodospirillum 1081 1 0 1409 3 Rhodospirillum centenum 34018 species 716 1 0 Rhodospirillum rubrum 1085 species 666 1 0 1 0 12731 35 family 97 Acetobacteraceae 433 genus 51 Komagataeibacter 1434011 1 0 1878 5 0 283 1 species Komagataeibacter europaeus 33995 species Komagataeibacter medellinensis 1177712 0 395 1 1 647 0 28448 Komagataeibacter xylinus species 502 1 0 Komagataeibacter nataicola 265960 species 8 4879 0 1 434 Acetobacter 41 genus 1 699 0 104102 Acetobacter tropicalis species 446692 Acetobacter senegalensis species 1 436 0 1 1908 0 438 Acetobacter pasteurianus species 532 1 0 Acetobacter persici 1076596 species 1633874 Acetobacter oryzifermentans species 1 527 0 427 1 0 Acetobacter pomorum 65959 species 151157 subgenus 1 309 0 species 435 Acetobacter aceti 0 1 309 genus 1 Asaia 91914 1 0 330 2 species 91915 Asaia bogorensis 0 1 329 2 965 0 1 364409 Granulibacter 13 genus 0 1 952 species 364410 Granulibacter bethesdensis 3 899 0 1 441 Gluconobacter 11 genus 1 618 0 442 Gluconobacter oxydans species species 318683 Gluconobacter albidus 0 1 270 Parasaccharibacter 1602345 genus 2 254 2 1 0 species Parasaccharibacter apium 1510841 0 252 1 2 398 0 1 153497 Kozakia 3 genus species Kozakia baliensis 153496 0 395 1 1286 3 1 0 Roseomonas 125216 genus 27 2617492 no rank 645 1 0 species Roseomonas sp. FDAARGOS_362 2018065 0 645 1 species 257708 Roseomonas gilardii 0 1 614 1 0 290 2 genus 2 Neoasaia 320496 0 288 1 species Neoasaia chiangmaiensis 320497 2 530 0 1 89583 Gluconacetobacter 3 genus 0 527 1 species Gluconacetobacter diazotrophicus 33996 Acidiphilium 522 genus 27 925 3 1 0 464 1 0 Acidiphilium multivorum 62140 species species Acidiphilium cryptum 524 0 434 1 0 2991 6 order 2800060 1 0 2991 6 family 43 Hyphomonadaceae 69657 genus 51 Hyphomonas 85 1 0 1256 3 species Hyphomonas neptunium 81032 0 479 1 0 726 1 no rank 2630699 species 1906738 Hyphomonas sp. Mor2 0 1 726 1692 2 1 0 Hirschia 2723 genus 27 species Hirschia baltica 2724 0 1665 1 order 1191478 0 464 3 family 2 Magnetococcaceae 1191479 1 0 464 3 Magnetococcus 162171 genus 2 462 2 1 0 460 1 0 Magnetococcus marinus 1124597 species 82117 no rank 8 13384 0 genus 3 Micavibrio 213485 1 0 757 2 754 1 0 Micavibrio aeruginosavorus 349221 species 2 699 0 1 991903 Polymorphum 47 genus Polymorphum gilvum 991904 species 652 1 0 1632780 Phreatobacter 18 genus 2 653 0 1 0 1 635 species 1868589 Phreatobacter sp. S-12 0 11275 2 clade 62654 767891 Candidatus Puniceispirillum 67 genus 2 11275 0 1 0 1 11208 species 767892 Candidatus Puniceispirillum marinum Caulobacterales 204458 order 26 7070 20 1 0 7044 19 1 0 Caulobacteraceae 76892 family 95 0 1 2 440 14 genus 76890 Asticcacaulis 78587 Asticcacaulis excentricus species 1 426 0 1 0 2451 7 genus 93 Brevundimonas 41275 1 318 0 41276 Brevundimonas vesicularis species no rank 2622653 0 1199 3 1 333 0 1532555 Brevundimonas sp. DS20 species Brevundimonas sp. LM2 1938605 species 551 1 0 species 1827469 Brevundimonas sp. GW460-12-10-14-LB2 0 1 315 Brevundimonas subvibrioides 74313 species 430 1 0 species Brevundimonas naejangsanensis 588932 0 411 1 1 422 0 81440 no rank 1759059 Caulobacteraceae bacterium OTSz_A_272 species 1 422 0 0 1 2 582 5 genus 20 Phenylobacterium species 284016 Phenylobacterium zucineum 0 1 577 51 genus 75 Caulobacter 0 1 6 3054 1 529 0 69666 Caulobacter mirabilis species 582 1 0 2648921 no rank species Caulobacter sp. K31 366602 0 582 1 0 930 1 species Caulobacter vibrioides 155892 1 478 0 69395 Caulobacter henricii species 88688 Caulobacter segnis species 1 484 0 Zetaproteobacteria 580370 class 1 682 6 1 0 1 0 681 5 order 10 Mariprofundales 580371 1 0 671 4 family 5 Mariprofundaceae 580372 3 666 0 1 377315 Mariprofundus 17 genus 0 285 1 species Mariprofundus ferrinatatus 1921087 species Mariprofundus aestuarium 1921086 0 364 1 68525 subphylum 197 128091 0 class 53 Deltaproteobacteria 28221 1 0 48649 126 0 1 4 2415 3 order 213113 Desulfurellales 14 family 117942 Desulfurellaceae 0 1 3 2412 84404 genus 744 1 0 Hippea maritima 84405 species 744 1 0 0 1 1654 genus 33001 0 1654 1 species Desulfurella acetivorans 33002 69541 Desulfuromonadales 71 order 24 6129 0 1 0 1 9 2018 7 family 213421 Desulfuromonadaceae 1108 5 1 0 Pelobacter 18 genus 13 0 1 285 species 29542 Pelobacter acetylenicus 296 1 0 2620299 no rank 1842532 Pelobacter sp. SFB93 species 1 296 0 270 1 0 Pelobacter propionicus 29543 species Pelobacter carbinolicus 19 species 244 1 0 0 1 3 903 9 genus 890 Desulfuromonas no rank 2614637 0 1 395 0 395 1 species Desulfuromonas sp. DDH964 1823759 species 1603606 Desulfuromonas soudanensis 0 1 499 17 family 213422 Geobacteraceae 0 1 14 4040 28231 Geobacter 61 genus 11 3746 0 1 1 277 0 225194 Geobacter bemidjiensis species 486 1 0 Geobacter metallireducens 28232 species 2627627 no rank 783 2 0 species 443143 Geobacter sp. M18 0 1 500 0 283 1 species Geobacter sp. M21 443144 0 1 173 species 1340425 Geobacter anodireducens Geobacter lovleyi 313985 species 304 1 0 351604 Geobacter uraniireducens species 1 774 0 0 363 1 species Geobacter daltonii 1203471 0 201 1 species Geobacter sulfurreducens 35554 0 324 1 species Geobacter pickeringii 345632 0 1 2 277 2 genus 392332 Geoalkalibacter species 483547 Geoalkalibacter subterraneus 0 1 275 1 0 1232 11 order 14 Syntrophobacterales 213462 family 5 Syntrophaceae 213468 1 0 907 7 2 336 0 1 2357 Desulfomonile 4 genus 2358 Desulfomonile tiedjei species 1 332 0 1 genus 43773 Syntrophus 0 1 2 286 0 285 1 species Syntrophus aciditrophicus 316277 60892 Desulfobacca 1 genus 2 280 0 1 1 279 0 60893 Desulfobacca acetoxidans species 311 3 1 0 Syntrophobacteraceae 213465 family 2 29526 Syntrophobacter 1 genus 2 309 0 1 0 308 1 species Syntrophobacter fumaroxidans 119484 Desulfobacterales 213118 order 24 5679 19 1 0 1 0 1850 8 family 9 Desulfobulbaceae 213121 1 302 0 427922 genus 302 1 0 Desulfurivibrio alkaliphilus 427923 species 670 2 1 0 Desulfocapsa 53318 genus 1 0 1 669 species 65555 Desulfocapsa sulfexigens Desulfotalea 109168 genus 9 621 2 1 0 0 1 612 species 84980 Desulfotalea psychrophila Desulfobulbus 893 genus 1 248 2 1 0 species 1986146 Desulfobulbus sp. ORNL 0 1 247 family 14 Desulfobacteraceae 213119 1 0 3805 10 1 0 718 3 genus 8 Desulfococcus 896 397 1 0 Desulfococcus oleovorans 181663 species 0 1 313 species 897 Desulfococcus multivorans 0 1 2 1052 3 genus 218207 Desulfatibacillum 1 1049 0 259354 Desulfatibacillum alkenivorans species 0 1 2 797 5 genus 2295 Desulfobacterium 2296 Desulfobacterium autotrophicum species 1 792 0 1 0 1224 2 genus 3 Desulfobacula 28222 species Desulfobacula toluolica 28223 0 1221 1 Myxococcales 29 order 250 26147 38 1 0 2285 3 0 224462 suborder 224464 Kofleriaceae 15 family 3 2285 0 1 2270 2 1 0 Haliangium 162027 genus 20 80816 Haliangium ochraceum species 1 2250 0 8983 8 0 80812 suborder family 26 Polyangiaceae 49 1 0 7130 5 5787 2 1 0 Sorangium 39643 genus 12 species 56 Sorangium cellulosum 0 1 5775 1317 2 1 0 Chondromyces 50 genus 4 0 1313 1 species Chondromyces crocatus 52 Sandaracinaceae 1055686 family 3 1853 3 1 0 genus 5 Sandaracinus 1055688 1 0 1850 2 927083 Sandaracinus amylolyticus species 1 1845 0 14629 26 0 80811 suborder 1 0 2825 5 family 8 Anaeromyxobacteraceae 1524215 4 2817 0 1 161492 Anaeromyxobacter 25 genus species 161493 Anaeromyxobacter dehalogenans 0 1 1194 0 1598 2 no rank 2620896 0 794 1 species Anaeromyxobacter sp. K 447217 0 804 1 species Anaeromyxobacter sp. Fw109-5 404589 1 0 6615 9 family 22 Myxococcaceae 31 24 genus 83461 Corallococcus 0 1 3 1951 species Myxococcus macrosporus 35 0 892 1 184914 Corallococcus coralloides species 1 1035 0 genus 100 Myxococcus 32 1 0 4642 5 0 706 1 species Myxococcus xanthus 34 0 1955 1 species Myxococcus fulvus 33 species Myxococcus hansupus 1297742 0 985 1 83455 Myxococcus stipitatus species 1 896 0 39 Archangiaceae 41 family 9 4605 0 1 6 genus 44 Melittangium 0 1 2 767 761 1 0 Melittangium boletus 83453 species 8 genus 47 Archangium 0 1 2 2007 0 1999 1 species Archangium gephyra 48 genus 7 Cystobacter 42 1 0 1066 2 species Cystobacter fuscus 43 0 1059 1 0 1 2 724 2 genus 40 Stigmatella 1 722 0 41 Stigmatella aurantiaca species 1524213 Vulgatibacteraceae 1 family 3 584 0 1 genus 6 Vulgatibacter 1524214 1 0 583 2 Vulgatibacter incomptus 1391653 species 577 1 0 0 1 26 6595 45 order 213115 Desulfovibrionales 4 425 0 1 213116 Desulfomicrobiaceae 1 family 1 0 424 3 genus 4 Desulfomicrobium 898 species Desulfomicrobium orale 132132 0 159 1 0 1 261 species 899 Desulfomicrobium baculatum 1 0 5925 18 family 26 Desulfovibrionaceae 194924 0 423 1 genus 2794998 880 Desulfovibrio salexigens species 1 423 0 4 904 0 1 2035811 Pseudodesulfovibrio 7 genus 289 1 0 Pseudodesulfovibrio indicus 1716143 species 0 1 346 species 182210 Pseudodesulfovibrio aespoeensis Pseudodesulfovibrio profundus 57320 species 262 1 0 1 318 0 2582840 genus 1 318 0 873 Desulfovibrio africanus species genus 1 Lawsonia 41707 1 0 1470 2 29546 Lawsonia intracellularis species 1 1469 0 2784 9 1 0 Desulfovibrio 872 genus 35 species 901 Desulfovibrio piger 0 1 170 1 272 0 58180 Desulfovibrio alaskensis species 0 875 1 species Desulfovibrio vulgaris 881 0 117 1 species Candidatus Desulfovibrio trichonymphae 1725232 0 158 1 no rank 2593640 0 158 1 species Desulfovibrio sp. G11 631220 species 44742 Desulfovibrio fairfieldensis 0 1 189 species Desulfovibrio magneticus 184917 0 487 1 Desulfovibrio desulfuricans 876 species 481 1 0 family 2 Desulfohalobiaceae 213117 1 0 200 3 Desulfohalobium 45662 genus 3 198 2 1 0 species Desulfohalobium retbaense 45663 0 195 1 0 399 3 order 453227 3 399 0 1 453228 Desulfarculaceae 7 family 453229 Desulfarculus 1 genus 2 392 0 1 Desulfarculus baarsii 453230 species 391 1 0 79442 71 1 0 Epsilonproteobacteria 29547 class 61 1 0 77574 64 order 193 Campylobacterales 213849 0 4 1107 family 2771472 genus 16 Sulfurovum 265570 1 0 820 3 0 1 439 species 206403 Sulfurovum lithotrophicum 0 1 365 no rank 2646778 0 1 365 species 387093 Sulfurovum sp. NBC37-1 genus 269260 0 287 1 species Nitratifractor salsuginis 269261 0 287 1 4 2613 0 2771471 family 1 275 0 286130 genus species Sulfuricurvum kujiense 148813 0 275 1 0 1 3 2338 18 genus 202746 Sulfurimonas species Sulfurimonas autotrophica 202747 0 1068 1 species 39766 Sulfurimonas denitrificans 0 1 1252 41 64395 0 1 72294 Campylobacteraceae 100 family 9 5073 0 1 57665 Sulfurospirillum 68 genus no rank 2618290 0 3 2415 0 1 789 species 1986224 Sulfurospirillum sp. SL2-1 678 1 0 Sulfurospirillum sp. JPD-1 220622 species 0 948 1 species Sulfurospirillum sp. UCH001 1581011 1 495 0 66821 Sulfurospirillum multivorans species Sulfurospirillum barnesii 44674 species 806 1 0 0 1 427 species 194424 Sulfurospirillum halorespirans 0 1 260 species 366522 Sulfurospirillum cavolei 1 602 0 65553 Sulfurospirillum deleyianum species 194 Campylobacter 333 genus 26 40873 0 1 species Campylobacter gracilis 824 0 212 1 0 1852 1 species Campylobacter subantarcticus 497724 488546 Campylobacter peloridis species 1 1646 0 species Campylobacter cuniculorum 374106 0 1397 1 827 Campylobacter ureolyticus species 1 1937 0 1 913 0 76517 Campylobacter hominis species 924 1 0 Campylobacter avium 522485 species species Campylobacter sputorum 206 0 2771 1 Campylobacter lanienae 75658 species 696 1 0 0 970 1 species Campylobacter iguaniorum 1244531 Campylobacter lari 201 species 4811 1 0 Campylobacter jejuni 197 species 3546 1 0 species 1965231 Campylobacter pinnipediorum 0 1 2357 1 1980 0 260714 Campylobacter insulaenigrae species species 199 Campylobacter concisus 0 1 1057 Campylobacter coli 195 species 2867 1 0 1190 1 0 Campylobacter hyointestinalis 198 species species Campylobacter volucris 1031542 0 1908 1 0 1 754 species 28898 Campylobacter helveticus 200 Campylobacter curvus species 1 249 0 196 Campylobacter fetus species 1 1660 0 0 4843 4 no rank 2593542 species 1660074 Campylobacter sp. RM8964 0 1 1082 species Campylobacter sp. RM12175 1660076 0 946 1 0 1893 1 species Campylobacter sp. RM16704 1500960 species Campylobacter sp. RM6137 1660073 0 922 1 0 18349 5 no rank 2321108 1 4554 0 2321207 no rank 4554 1 0 Arcobacter sp. L 944547 species 2321187 genus 4316 1 0 1 4316 0 1850254 Arcobacter sp. LPB0137 species genus 107 Arcobacter 28196 1 0 9479 3 3790 1 0 Arcobacter nitrofigilis 28199 species species Arcobacter butzleri 28197 0 5582 1 1 0 9266 14 family 10 Helicobacteraceae 72293 Helicobacter 209 genus 43 9043 12 1 0 species 76936 Helicobacter typhlonius 0 1 462 1 481 0 213 Helicobacter cinaedi species 1 332 0 217 Helicobacter mustelae species 212 Helicobacter acinonychis species 1 268 0 species Helicobacter bilis 37372 0 692 1 species Helicobacter felis 214 0 190 1 Helicobacter pylori 210 species 3774 1 0 0 1139 1 species Helicobacter cetorum 138563 0 381 1 no rank 2593540 species 222136 Helicobacter sp. MIT 01-6242 0 1 381 species Helicobacter hepaticus 32025 0 831 1 species Helicobacter himalayensis 1591088 0 450 1 843 genus 1 213 0 844 Wolinella succinogenes species 1 213 0 1 0 1807 6 order 2 Nautiliales 235899 670 2 0 2795691 family 2 670 0 1 269258 Nitratiruptor 4 genus 1 666 0 2624044 no rank 0 1 666 species 387092 Nitratiruptor sp. SB155-2 1 family 224467 Nautiliaceae 0 1 3 1135 0 1 2 1134 2 genus 191291 Nautilia species Nautilia profundicola 244787 0 1132 1 1 0 186934 354 class 190 Betaproteobacteria 28216 120 order 206351 Neisseriales 0 1 37 11270 7607 23 1 0 Neisseriaceae 481 family 41 genus 84 Neisseria 482 1 0 3583 12 1 917 0 487 Neisseria meningitidis species Neisseria elongata 495 species 233 1 0 Neisseria sicca 490 species 174 1 0 278 1 0 Neisseria gonorrhoeae 485 species Neisseria zoodegmatis 326523 species 308 1 0 Neisseria mucosa 488 species 227 1 0 322 1 0 Neisseria lactamica 486 species 1 247 0 1853278 Neisseria sp. 10023 species 0 1 320 species 28091 Neisseria weaveri 473 2 0 2623750 no rank 0 253 1 species Neisseria sp. 10022 1853276 0 1 220 species 655307 Neisseria sp. KEM232 558 2 1 0 Simonsiella 71 genus 2 0 556 1 species Simonsiella muelleri 72 Eikenella 538 genus 3 308 2 1 0 305 1 0 Eikenella corrodens 539 species 1 genus 1193515 Snodgrassella 0 1 2 691 species 1196083 Snodgrassella alvi 0 1 690 1037 3 1 0 Vitreoscilla 59 genus 13 no rank 2627922 0 740 1 0 1 740 species 96942 Vitreoscilla sp. C1 63 Vitreoscilla filiformis species 1 284 0 421605 no rank 1 1389 0 0 1 1389 species 2052837 Neisseriaceae bacterium DSM 100970 1 0 3543 13 family 52 Chromobacteriaceae 1499392 2 436 0 1 568394 Pseudogulbenkiania 4 genus 432 1 0 2642558 no rank 0 432 1 species Pseudogulbenkiania sp. NH8B 748280 11 genus 187 Aquaspirillum 0 1 2 374 2620219 no rank 1 363 0 species 1938604 Aquaspirillum sp. LM1 0 1 363 90153 no rank 4 1910 0 32 genus 535 Chromobacterium 0 1 4 1910 Chromobacterium violaceum 536 species 575 1 0 0 555 1 no rank 2641838 0 1 555 species 2059672 Chromobacterium sp. ATCC 53434 species Chromobacterium vaccinii 1108595 0 748 1 396 2 1 0 Jeongeupia 885864 genus 4 1 392 0 2619593 no rank 392 1 0 Jeongeupia sp. USM3 1906741 species 4 genus 168470 Laribacter 0 1 2 375 1 371 0 168471 Laribacter hongkongensis species no rank 33809 0 2 1127 0 661 1 species beta proteobacterium CB 543913 1 466 0 1904640 Betaproteobacteria bacterium GR16-43 species 75 order 32003 Nitrosomonadales 0 1 44 13629 1 0 5514 12 family 31 Nitrosomonadaceae 206379 914 Nitrosomonas 23 genus 7 4688 0 1 0 1 1037 species 44574 Nitrosomonas communis 2609265 no rank 1832 2 0 1 981 0 153948 Nitrosomonas sp. AL212 species 0 1 851 species 261292 Nitrosomonas sp. Is79A3 794 1 0 Nitrosomonas ureae 44577 species 0 372 1 species Nitrosomonas europaea 915 1 630 0 916 Nitrosomonas eutropha species 11 genus 35798 Nitrosospira 0 1 4 795 Nitrosospira lacus 1288494 species 306 1 0 204 1 0 Nitrosospira multiformis 1231 species species Nitrosospira briensis 35799 0 274 1 2772226 family 4 662 0 2 306 0 1 1778653 Sulfuriferula 8 genus 2637784 no rank 298 1 0 0 1 298 species 1985873 Sulfuriferula sp. AH1 Sulfuricella 935200 genus 8 356 2 1 0 348 1 0 Sulfuricella denitrificans 649841 species 349 3 1 0 Thiobacillaceae 2008790 family 3 1 0 346 2 genus 4 Thiobacillus 919 species 36861 Thiobacillus denitrificans 0 1 342 0 1 5 686 9 family 90627 Gallionellaceae 314343 Sideroxydans 3 genus 2 292 0 1 1 289 0 63745 Sideroxydans lithotrophicus species 2 385 0 1 96 Gallionella 2 genus species 370405 Gallionella capsiferriformans 0 1 383 Sterolibacteriaceae 2008793 family 23 854 5 1 0 1 0 431 2 genus 12 Sulfuritalea 1054211 species 748811 Sulfuritalea hydrogenivorans 0 1 419 400 2 1 0 Methyloversatilis 378210 genus 4 396 1 0 2639971 no rank species Methyloversatilis sp. RAC08 1842540 0 396 1 32011 Methylophilaceae 39 family 14 5489 0 1 592 3 1 0 Methylovorus 81682 genus 16 no rank 2634027 0 1 272 species Methylovorus sp. MP688 887061 0 272 1 Methylovorus glucosotrophus 266009 species 304 1 0 2 genus 404 Methylobacillus 0 1 2 372 0 370 1 species Methylobacillus flagellatus 405 1 0 2409 3 genus 9 Candidatus Methylopumilus 1679002 species 1581680 Candidatus Methylopumilus turicensis 0 1 642 1 1758 0 1581557 Candidatus Methylopumilus planktonicus species genus 2 Methylophilus 16 1 0 453 2 no rank 2630143 0 451 1 451 1 0 Methylophilus sp. TWE2 1662285 species 1 0 1624 3 genus 22 Methylotenera 359407 1 998 0 1055487 Methylotenera versatilis species 0 604 1 species Methylotenera mobilis 359408 order 62 Rhodocyclales 206389 1 0 5842 22 family 53 Zoogloeaceae 2008794 1 0 4373 12 1 0 2088 5 genus 43 Azoarcus 12960 species 2067960 Azoarcus sp. SY39 0 1 474 0 1124 2 no rank 2629479 0 1 538 species 748247 Azoarcus sp. KH32C species Azoarcus sp. CIB 198107 0 586 1 0 447 1 species Azoarcus olearius 418699 0 1 6 2232 69 genus 33057 Thauera 0 2 972 no rank 2609274 2005884 Thauera sp. K11 species 1 448 0 85643 Thauera sp. MZ1T species 1 524 0 1 396 0 1134435 Thauera humireducens species species Thauera aromatica 59405 0 374 1 Thauera chlorobenzoica 96773 species 421 1 0 1 0 1022 6 family 11 Rhodocyclaceae 75787 Aromatoleum 551759 genus 4 358 2 1 0 551760 Aromatoleum aromaticum species 1 354 0 no rank 75788 0 315 1 Rhodocyclaceae bacterium 1898103 species 315 1 0 6 genus 146937 Azospira 0 1 2 338 species 146939 Azospira oryzae 0 1 332 1 0 385 3 family 9 Azonexaceae 2008795 2 376 0 1 73029 Dechloromonas 2 genus 1 374 0 259537 Dechloromonas aromatica species 144353 236 1 0 Burkholderiales 80840 order 1104 no rank 224471 0 7126 17 6 genus 32012 Thiomonas 0 1 2 585 species 926 Thiomonas intermedia 0 1 579 Rhizobacter 212743 genus 16 733 2 1 0 0 1 717 species 946333 Rhizobacter gummiphilus 413882 [Polyangium] brachysporum species 1 1112 0 0 1 2 842 14 genus 316612 Methylibium species 105560 Methylibium petroleiphilum 0 1 828 0 1 2 910 17 genus 65047 Mitsuaria 893 1 0 2648776 no rank 1 893 0 1658665 Mitsuaria sp. 7 species 1 0 915 2 genus 20 Roseateles 93681 0 1 895 species 76731 Roseateles depolymerans Paucibacter 318147 genus 11 678 2 1 0 no rank 2642959 0 1 667 species Paucibacter sp. KCTC 42545 1768242 0 667 1 2 615 0 1 88 Leptothrix 18 genus species 34029 Leptothrix cholodnii 0 1 597 genus 10 Rubrivivax 28067 1 0 736 2 0 726 1 species Rubrivivax gelatinosus 28068 77108 84 1 0 Burkholderiaceae 119060 family 339 106589 Cupriavidus 128 genus 9 7904 0 1 1 575 0 82541 Cupriavidus gilardii species 2640874 no rank 2 2134 0 species Cupriavidus sp. USMAA2-4 876364 0 1201 1 933 1 0 Cupriavidus sp. USMAHM13 1389192 species species 119219 Cupriavidus metallidurans 0 1 1266 species Cupriavidus sp. USMAA1020 367825 0 968 1 0 1415 1 species Cupriavidus basilensis 68895 Cupriavidus pinatubonensis 248026 species 463 1 0 0 955 1 species Cupriavidus necator 106590 1 0 2110 4 genus 23 Polynucleobacter 44013 925 1 0 Polynucleobacter asymbioticus 576611 species 489 1 0 Polynucleobacter necessarius 576610 species 0 673 1 species Polynucleobacter duraquae 1835254 2571159 genus 1 303 0 0 1 303 species 412963 Paraburkholderia rhizoxinica Ralstonia 48736 genus 52 4230 5 1 0 species Ralstonia insidiosa 190721 0 493 1 species Ralstonia solanacearum 305 0 2296 1 Ralstonia mannitolilytica 105219 species 560 1 0 1 829 0 329 Ralstonia pickettii species 0 1 41 48770 1036 genus 32008 Burkholderia 1 1318 0 28095 Burkholderia gladioli species species group 87882 0 19 19421 [Pseudomonas] mesoacidophila 265293 species 506 1 0 species Burkholderia ambifaria 152480 0 898 1 629 1 0 Burkholderia contaminans 488447 species 1953 1 0 Burkholderia ubonensis 101571 species Burkholderia vietnamiensis 60552 species 1167 1 0 1207504 Burkholderia pseudomultivorans species 1 505 0 1 441 0 60550 Burkholderia pyrrocinia species species 488446 Burkholderia latens 0 1 605 1 462 0 1503055 Burkholderia territorii species 292 Burkholderia cepacia species 1 3031 0 87883 Burkholderia multivorans species 1 1131 0 1 931 0 95485 Burkholderia stabilis species 1 1762 0 482957 Burkholderia lata species 0 455 1 species Burkholderia dolosa 152500 1 462 0 488732 Burkholderia diffusa species species Burkholderia metallica 488729 0 484 1 Burkholderia cenocepacia 95486 species 2792 1 0 0 609 1 species Burkholderia stagnalis 1503054 Burkholderia seminalis 488731 species 598 1 0 11 7805 0 2613784 no rank species Burkholderia sp. PAMC 26561 1795043 0 298 1 Burkholderia sp. KJ006 416344 species 460 1 0 622 1 0 Burkholderia sp. YI23 1097668 species 1 319 0 1795874 Burkholderia sp. PAMC 28687 species 0 1 437 species 1740163 Burkholderia sp. Bp7605 0 1 2844 species 758796 Burkholderia sp. RPE67 species 640512 Burkholderia sp. CCGE1003 0 1 677 0 1 536 species 640510 Burkholderia sp. CCGE1001 species 1468409 Burkholderia sp. 2002721687 0 1 571 species Burkholderia sp. HB1 1678678 0 515 1 0 1 526 species 1740162 Burkholderia sp. Bp5365 111527 species group 7 17171 0 0 1 1072 species 1637841 Burkholderia sp. MSMB0852 342113 Burkholderia oklahomensis species 1 3178 0 species 1637837 Burkholderia sp. MSMB0266 0 1 886 species 13373 Burkholderia mallei 0 1 1647 1 1032 0 1637831 Burkholderia sp. MSMB617WGS species 0 1 1971 species 57975 Burkholderia thailandensis 1 7385 0 28450 Burkholderia pseudomallei species 691 1 0 Burkholderia plantarii 41899 species species Burkholderia glumae 337 0 1328 1 0 658 1 genus 1827195 0 1 658 species 758793 Burkholderia sp. RPE64 genus 66 Pandoraea 93217 1 0 5483 10 0 1 368 species 445709 Pandoraea thiooxydans 0 351 1 species Pandoraea sputorum 93222 93220 Pandoraea pnomenusa species 1 869 0 Pandoraea apista 93218 species 458 1 0 0 1 1184 species 93221 Pandoraea pulmonicola 1 402 0 656179 Pandoraea faecigallinarum species species Pandoraea norimbergensis 93219 0 928 1 species Pandoraea oxalativorans 573737 0 448 1 species 656178 Pandoraea vervacti 0 1 409 0 1 12 7311 96 genus 1822464 Paraburkholderia 0 1 648 species 261302 Paraburkholderia phytofirmans Paraburkholderia phenoliruptrix 252970 species 500 1 0 species Paraburkholderia hospita 169430 0 704 1 no rank 2615204 0 1 681 Paraburkholderia sp. SOS3 1926494 species 681 1 0 species 75105 Paraburkholderia caribensis 0 1 1263 1 570 0 948107 Paraburkholderia sprentiae species 625 1 0 Paraburkholderia xenovorans 36873 species species 311230 Paraburkholderia terrae 0 1 549 0 1 570 species 2026199 Paraburkholderia aromaticivorans 0 524 1 species Paraburkholderia fungorum 134537 1 581 0 148447 Paraburkholderia phymatum species 246 family 80864 Comamonadaceae 0 1 59 25740 174951 Ramlibacter 4 genus 2 877 0 1 873 1 0 Ramlibacter tataouinensis 94132 species 3 765 0 1 219181 Ottowia 10 genus 2109914 Ottowia sp. KADR8-3 species 1 401 0 354 1 0 2645081 no rank 1 354 0 1658672 Ottowia sp. oral taxon 894 species 1 0 1559 5 genus 19 Rhodoferax 28065 0 1 274 species 1484693 Rhodoferax saidenbachensis 0 1 378 species 192843 Rhodoferax ferrireducens 1 377 0 81479 Rhodoferax antarcticus species 1842727 Rhodoferax koreense species 1 511 0 2 391 0 1 1649468 Melaminivora 5 genus no rank 2641902 0 386 1 species 2109913 Melaminivora sp. SC2-9 0 1 386 1 0 5376 5 genus 67 Variovorax 34072 1822 2 0 663243 no rank species 2126319 Variovorax sp. PMC12 0 1 1150 672 1 0 Variovorax sp. PAMC 28711 1795631 species 677 1 0 Variovorax boronicumulans 436515 species 1 2810 0 34073 Variovorax paradoxus species genus 1 Verminephrobacter 364316 1 0 817 2 Verminephrobacter eiseniae 364317 species 816 1 0 genus 1 Candidatus Symbiobacter 1436289 1 0 311 2 310 1 0 Candidatus Symbiobacter mobilis 1436290 species 665874 Limnohabitans 2 genus 3 569 0 1 no rank 2626134 0 567 2 1 280 0 1678128 Limnohabitans sp. 63ED37-2 species 287 1 0 Limnohabitans sp. 103DPR2 1678129 species 7 genus 47420 Hydrogenophaga 0 1 4 1340 940 2 0 2610897 no rank Hydrogenophaga sp. PBC 795665 species 541 1 0 0 1 399 species 1842537 Hydrogenophaga sp. RAC07 0 1 393 species 1763535 Hydrogenophaga crassostreae genus 1 Diaphorobacter 238749 1 0 410 2 0 1 409 species 1546149 Diaphorobacter polyhydroxybutyrativorans Acidovorax 12916 genus 81 3171 9 1 0 254 1 0 Acidovorax sp. NA3 553814 species 0 1555 4 no rank 2684926 species Acidovorax sp. RAC01 1842533 0 323 1 232721 Acidovorax sp. JS42 species 1 333 0 species Acidovorax sp. KKS102 358220 0 365 1 0 1 534 species 1858609 Acidovorax sp. T1 0 441 1 species Acidovorax citrulli 80869 512 1 0 Acidovorax avenae 80867 species 0 328 1 species Acidovorax ebreus 721785 0 1 4 2464 5 genus 283 Comamonas 1268 1 0 Comamonas serinivorans 1082851 species 285 Comamonas testosteroni species 1 727 0 0 1 464 species 225992 Comamonas kerstersii 2 639 0 2490452 genus 1458426 Comamonadaceae bacterium B1 species 1 357 0 1 282 0 1458425 Comamonadaceae bacterium A1 species 1 369 0 2678886 genus species 2116657 Melaminivora sp. SC2-7 0 1 369 52972 Polaromonas 8 genus 3 2838 0 1 0 1 2205 no rank 2638319 2205 1 0 Polaromonas sp. JS666 296591 species 0 625 1 species Polaromonas naphthalenivorans 216465 539 2 1 0 Alicycliphilus 201096 genus 4 Alicycliphilus denitrificans 179636 species 535 1 0 Simplicispira 352450 genus 8 350 2 1 0 0 1 342 species 2109915 Simplicispira sp. SC1-8 57 genus 80865 Delftia 0 1 5 2709 80866 Delftia acidovorans species 1 608 0 species Delftia tsuruhatensis 180282 0 667 1 no rank 2613839 0 1377 2 0 745 1 species Delftia sp. Cs1-4 742013 0 1 632 species 1920191 Delftia sp. HK171 Oxalobacteraceae 75682 family 88 12672 29 1 0 3371 7 1 0 Janthinobacterium 29580 genus 47 476 1 0 Janthinobacterium agaricidamnosum 55508 species 0 4 2103 no rank 2610881 species Janthinobacterium sp. Marseille 375286 0 325 1 1 660 0 1644131 Janthinobacterium sp. 1_2014MBL_MicDiv species species 1236179 Janthinobacterium sp. B9-8 0 1 643 1 475 0 1938606 Janthinobacterium sp. LM6 species 1 745 0 368607 Janthinobacterium svalbardensis species 6 3269 0 1 963 Herbaspirillum 57 genus 713 1 0 Herbaspirillum hiltneri 341045 species 2624150 no rank 1 414 0 species 2025949 Herbaspirillum sp. meg3 0 1 414 0 461 1 species Herbaspirillum frisingense 92645 964 Herbaspirillum seropedicae species 1 1227 0 species Herbaspirillum rubrisubalbicans 80842 0 397 1 2994 6 1 0 Massilia 149698 genus 55 species 2072590 Massilia sp. ZMN-3 0 1 595 Massilia putida 1141883 species 634 1 0 2045208 Massilia sp. B2 species 1 540 0 no rank 2609279 0 2 1170 species Massilia sp. WG5 1707785 0 625 1 Massilia sp. NR 4-1 1678028 species 545 1 0 1 0 335 2 genus 3 Oxalobacter 846 Oxalobacter formigenes 847 species 332 1 0 3 756 0 1 303379 Herminiimonas 10 genus species 1809410 Herminiimonas arsenitoxidans 0 1 405 0 1 341 species 204773 Herminiimonas arsenicoxydans 56 genus 202907 Collimonas 0 1 4 1859 Collimonas arenae 279058 species 721 1 0 441 1 0 Collimonas pratensis 279113 species 0 641 1 species Collimonas fungivorans 158899 no rank 80841 0 2 714 0 265 1 species Burkholderiales bacterium GJ-E10 1469502 449 1 0 Burkholderiales bacterium YL45 1834205 species 506 Alcaligenaceae 79 family 44 19889 0 1 1921582 Orrella 4 genus 2 357 0 1 0 353 1 species Orrella dioscoreae 1851544 0 1 3 855 10 genus 290425 Advenella 0 1 370 species 302406 Advenella mimigardefordensis 0 475 1 species Advenella kashmirensis 310575 2 472 0 1 1100891 Paenalcaligenes 1 genus species 643674 Paenalcaligenes hominis 0 1 471 Basilea 1472344 genus 5 806 2 1 0 species Basilea psittacipulmonis 1472345 0 801 1 3 genus 90243 Oligella 0 1 2 497 species 90245 Oligella urethralis 0 1 494 359336 Castellaniella 4 genus 2 351 0 1 0 1 347 species 75697 Castellaniella defragrans 305976 Pusillimonas 3 genus 2 415 0 1 0 412 1 no rank 2640016 1 412 0 1007105 Pusillimonas sp. T7-7 species Bordetella 517 genus 203 7217 17 1 0 species 123899 Bordetella trematum 0 1 278 species Bordetella parapertussis 519 0 589 1 1416806 Bordetella genomosp. 8 species 1 450 0 0 1 266 species 521 Bordetella avium 0 1 336 species 94624 Bordetella petrii 1331258 Bordetella pseudohinzii species 1 377 0 463040 Bordetella genomosp. 13 species 1 435 0 1 384 0 463025 Bordetella bronchialis species species Bordetella bronchiseptica 518 0 1054 1 species 463014 Bordetella flabilis 0 1 395 no rank 2630031 0 1 321 1 321 0 1697043 Bordetella sp. H567 species Bordetella holmesii 35814 species 238 1 0 species 103855 Bordetella hinzii 0 1 415 species Bordetella genomosp. 9 1416803 0 389 1 Bordetella pertussis 520 species 537 1 0 0 550 1 species Bordetella genomosp. 6 463024 29574 Taylorella 10 genus 3 2372 0 1 1154 1 0 Taylorella asinigenitalis 84590 species 0 1 1208 species 29575 Taylorella equigenitalis 1 0 4897 6 genus 93 Achromobacter 222 977 1 0 Achromobacter denitrificans 32002 species species Achromobacter insolitus 217204 0 477 1 85698 Achromobacter xylosoxidans species 1 2054 0 484 1 0 2626865 no rank 1 484 0 1758194 Achromobacter sp. AONIH1 species species Achromobacter spanius 217203 0 812 1 1 0 1571 2 genus 6 Alcaligenes 507 1565 1 0 Alcaligenes faecalis 511 species 10523 12 0 119066 no rank 33055 Kinetoplastibacterium 46 genus 6 8073 0 1 Kinetoplastibacterium blastocrithidii 233181 species 1320 1 0 Candidatus Kinetoplastibacterium crithidii 33056 species 2029 1 0 0 1351 1 species Candidatus Kinetoplastibacterium oncopeltii 994696 2084 1 0 Candidatus Kinetoplastibacterium desouzaii 994692 species 1243 1 0 Candidatus Kinetoplastibacterium galatii 994695 species 422 2 1 0 Candidatus Accumulibacter 327159 genus 2 1 420 0 327160 Candidatus Accumulibacter phosphatis species 1635 2 1 0 Candidatus Profftella 1381133 genus 1 1 1634 0 669502 Candidatus Profftella armatura species 1 78 0 189384 genus species 189385 Candidatus Tremblaya princeps 0 1 78 1 315 0 1301080 genus 0 1 315 species 1160784 Candidatus Nasuia deltocephalinicola 0 3466 14 phylum 40117 class 12 Nitrospira 203693 1 0 3466 14 0 1 13 3454 20 order 189778 Nitrospirales family 6 Nitrospiraceae 189779 1 0 3434 12 genus 2 Leptospirillum 179 1 0 753 4 238 1 0 261385 species group 1 238 0 1660083 Leptospirillum sp. Group II 'CF-1' species 655606 species group 1 302 0 0 302 1 species Leptospirillum ferrooxidans 180 species group 261386 0 1 211 178606 Leptospirillum ferriphilum species 1 211 0 1 0 853 5 genus 9 Nitrospira 1234 1325564 Nitrospira japonica species 1 200 0 0 1 281 species 42253 Nitrospira moscoviensis 202 1 0 Nitrospira defluvii 330214 species 161 1 0 Candidatus Nitrospira inopinata 1715989 species 2 1822 0 1 28261 Thermodesulfovibrio 7 genus 28262 Thermodesulfovibrio yellowstonii species 1 1815 0 0 32565 57 phylum 203691 class 70 Spirochaetia 203692 1 0 32565 57 1 0 19680 41 order 79 Spirochaetales 136 1 0 6280 23 family 34 Spirochaetaceae 137 0 1 3 663 4 genus 146 Spirochaeta 360 1 0 Spirochaeta africana 46355 species 154 Spirochaeta thermophila species 1 299 0 0 392 1 genus 1911556 species 55206 Sediminispirochaeta smaragdinae 0 1 392 901 2 1 0 Salinispira 1616789 genus 1 Salinispira pacifica 1307761 species 900 1 0 1 0 3602 12 genus 22 Treponema 157 Treponema brennaborense 81028 species 195 1 0 species 409322 Treponema pedis 0 1 567 species 221027 Treponema putidum 0 1 455 2638727 no rank 1 241 0 0 1 241 species 1539298 Treponema sp. OMZ 838 Treponema paraluiscuniculi 53435 species 128 1 0 Treponema azotonutricium 150829 species 252 1 0 species 160 Treponema pallidum 0 1 112 species Treponema succinifaciens 167 0 504 1 1 470 0 158 Treponema denticola species species 215591 Treponema caldarium 0 1 315 0 1 341 species 88058 Treponema primitia 688 4 1 0 Sphaerochaeta 399320 genus 3 species 1131707 Sphaerochaeta pleomorpha 0 1 198 215 1 0 Sphaerochaeta globosa 1131703 species 273376 Sphaerochaeta coccoides species 1 272 0 Borreliaceae 1643685 family 23 13321 17 1 0 1 0 6118 8 genus 347 Borreliella 64895 775 1 0 Borrelia mayonii 1674146 species 0 795 1 species Borreliella afzelii 29518 1346 1 0 Borreliella garinii 29519 species 1 632 0 62088 Borreliella valaisiana species 664662 Borreliella bavariensis species 1 669 0 0 1 749 species 64897 Borreliella bissettii 1 805 0 139 Borreliella burgdorferi species 7180 8 1 0 Borrelia 138 genus 168 Borrelia hermsii 140 species 608 1 0 1 695 0 141 Borrelia parkeri species species 143 Borrelia anserina 0 1 644 species 47466 Borrelia miyamotoi 0 1 1781 species Borrelia turicatae 142 0 726 1 962 1 0 Borrelia recurrentis 44449 species 1596 1 0 Borrelia duttonii 40834 species 5005 8 0 1643688 order Leptospiraceae 170 family 46 5005 8 1 0 genus 338321 0 312 1 312 1 0 Turneriella parva 29510 species 24 genus 171 Leptospira 0 1 6 4647 species 28183 Leptospira santarosai 0 1 499 0 1909 1 species Leptospira interrogans 173 0 881 1 species Leptospira biflexa 172 1 803 0 174 Leptospira borgpetersenii species species 28452 Leptospira alstonii 0 1 531 7810 7 1 0 Brachyspirales 1643686 order 15 143786 Brachyspiraceae 13 family 6 7795 0 1 7782 5 1 0 Brachyspira 29521 genus 33 1977 1 0 Brachyspira hyodysenteriae 159 species 1 2367 0 52584 Brachyspira pilosicoli species species 84377 Brachyspira intermedia 0 1 1791 species 84378 Brachyspira murdochii 0 1 1614 1930617 phylum 4 644 0 class 1 Calditrichae 1962850 1 0 644 4 order 1 Calditrichales 1962852 1 0 643 3 Calditrichaceae 1962854 family 2 642 2 1 0 genus 187144 0 1 640 Caldithrix abyssi 187145 species 640 1 0 1677 4349173 0 1783272 clade 1297 phylum 6711 35 0 Deinococci 188787 class 18 6711 35 1 0 order 2762275 0 3 388 1 family 332247 Trueperaceae 0 1 3 388 0 1 2 387 3 genus 332248 Truepera 1 384 0 332249 Truepera radiovictrix species 3312 15 1 0 Deinococcales 118964 order 44 1 0 3268 14 family 10 Deinococcaceae 183710 Deinococcus 1298 genus 46 3258 13 1 0 55148 Deinococcus proteolyticus species 1 366 0 0 1 200 species 432329 Deinococcus peraridilitoris 1 269 0 1182571 Deinococcus swuensis species 1 350 0 502394 Deinococcus gobiensis species 292 1 0 Deinococcus actinosclerus 1768108 species species 309887 Deinococcus maricopensis 0 1 373 Deinococcus radiodurans 1299 species 240 1 0 no rank 2623546 0 1 261 1 261 0 2080419 Deinococcus sp. NW-56 species 0 278 1 species Deinococcus soli Cha et al. 2016 1309411 205 1 0 Deinococcus geothermalis 68909 species 0 181 1 species Deinococcus deserti 310783 species 1182568 Deinococcus puniceus 0 1 197 16 2993 0 1 68933 Thermales 18 order Thermaceae 188786 family 24 2975 15 1 0 1 genus 65551 Meiothermus 0 1 3 519 species 277 Meiothermus ruber 0 1 300 species 52022 Meiothermus silvanus 0 1 218 1 0 326 2 genus 2 Oceanithermus 208447 1 324 0 187137 Oceanithermus profundus species 1891 8 1 0 Thermus 270 genus 30 species 37636 Thermus scotoductus 0 1 193 1 140 0 2619321 no rank 0 140 1 species Thermus sp. CCB_US3_UF1 1111069 Thermus aquaticus 271 species 241 1 0 1 233 0 56957 Thermus oshimai species 0 1 646 species 274 Thermus thermophilus 168 1 0 Thermus brockianus 56956 species species Thermus parvatiensis 456163 0 240 1 186191 genus 1 215 0 0 1 215 species 186192 Marinithermus hydrothermalis 1 0 481381 697 phylum 142 Firmicutes 1239 84086 no rank 1244 1 0 species endosymbiont 'TC1' of Trimyema compressum 243899 0 1244 1 7627 18 1 0 Tissierellia 1737404 class 12 1 0 6944 15 order 22 Tissierellales 1737405 0 1 3 1892 4 family 2042895 Gottschalkiaceae Gottschalkia 1505664 genus 4 1888 2 1 0 1884 1 0 Gottschalkia acidurici 1556 species 12 family 1570339 Peptoniphilaceae 0 1 11 5030 0 183 1 genus 1161127 0 183 1 species Murdochiella vaginalis 1852373 2 1596 0 1 543311 Parvimonas 5 genus 1591 1 0 Parvimonas micra 33033 species 1 0 971 2 genus 1 Finegoldia 150022 1 970 0 1260 Finegoldia magna species 1 0 674 2 genus 4 Peptoniphilus 162289 1 670 0 2637196 no rank species Peptoniphilus sp. ING2-D1G 1912856 0 670 1 1 0 1594 3 genus 4 Anaerococcus 165779 0 805 1 species Anaerococcus mediterraneensis 1870984 species 33034 Anaerococcus prevotii 0 1 785 no rank 1737407 0 2 671 1582879 Ezakiella 9 genus 2 671 0 1 1852374 Ezakiella massiliensis species 1 662 0 186801 Clostridia 178 class 207 185271 0 1 153 154559 0 1 186802 Clostridiales 284 order 1926 13 1 0 Ruminococcaceae 541000 family 31 261 2 1 0 Faecalibacterium 216851 genus 2 853 Faecalibacterium prausnitzii species 1 259 0 2305133 no rank 1 186 0 1572656 Ruminococcaceae bacterium CPB6 species 1 186 0 genus 1 Ruminococcus 1263 1 0 664 3 Ruminococcus bicirculans 1160721 species 306 1 0 species Ruminococcus albus 1264 0 357 1 Flavonifractor 946234 genus 9 278 2 1 0 0 1 269 species 292800 Flavonifractor plautii no rank 552397 0 1 258 0 258 1 species [Clostridium] cellulosi 29343 253238 Ethanoligenens 1 genus 2 246 0 1 0 1 245 species 253239 Ethanoligenens harbinense 1890281 Herbivorax genus 1 2 0 110783 40 1 0 Clostridiaceae 31979 family 127 Mordavella 1981033 genus 1 1 0 0 1 3 2393 4 genus 114627 Alkaliphilus species 208226 Alkaliphilus metalliredigens 0 1 1492 species 461876 Alkaliphilus oremlandii 0 1 897 390805 genus 1 1006 0 Geosporobacter ferrireducens 1424294 species 1006 1 0 1 0 4143 4 genus 42 Candidatus Arthromitus 49082 0 4101 3 no rank 2638829 0 1 1271 species 49118 Candidatus Arthromitus sp. SFB-mouse Candidatus Arthromitus sp. SFB-rat-Yit 1041504 species 1526 1 0 1304 1 0 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 species 1 0 103113 30 genus 521 Clostridium 1485 0 1 1385 species 1497 Clostridium formicaceticum 1 1850 0 84023 Clostridium autoethanogenum species species 1519 Clostridium tyrobutyricum 0 1 1592 1 2406 0 46867 Clostridium chauvoei species species Clostridium aceticum 84022 0 1540 1 0 2788 1 species Clostridium tetani 1513 species 1534 Clostridium kluyveri 0 1 2696 0 3009 1 species Clostridium carboxidivorans 217159 0 2407 1 species Clostridium cellulovorans 1493 0 1 3939 species 36745 Clostridium saccharoperbutylacetonicum 0 3825 1 species Clostridium saccharobutylicum 169679 1 5585 0 1520 Clostridium beijerinckii species no rank 2614128 0 1012 2 species 1042156 Clostridium sp. SY8519 0 1 153 species 755731 Clostridium sp. BNL1100 0 1 859 species Clostridium ljungdahlii 1538 0 1914 1 species 1509 Clostridium sporogenes 0 1 2436 0 2231 1 species Clostridium acetobutylicum 1488 species Clostridium taeniosporum 394958 0 2817 1 0 2331 1 species Clostridium estertheticum 238834 4884 1 0 Clostridium perfringens 1502 species 0 1 4185 species 1492 Clostridium butyricum 0 26078 1 species Clostridium botulinum 1491 1 2014 0 1542 Clostridium novyi species 1 4683 0 1561 Clostridium baratii species 1501 Clostridium pasteurianum species 1 4614 0 0 1 2644 species 1216932 Clostridium bornimense species 1548 Clostridium scatologenes 0 1 3153 0 2525 1 species Clostridium argentinense 29341 Clostridium cochlearium 1494 species 2049 1 0 1 0 10932 11 family 28 Peptostreptococcaceae 186804 1 0 5185 2 genus 5 Clostridioides 1870884 species Clostridioides difficile 1496 0 5180 1 301 1 0 1481960 genus Peptoclostridium acidaminophilum 1731 species 301 1 0 0 901 1 no rank 1411023 1 901 0 2081703 Peptostreptococcaceae bacterium oral taxon 929 species genus 1 Paeniclostridium 1849828 1 0 2527 2 1505 Paeniclostridium sordellii species 1 2526 0 genus 5 Filifactor 44259 1 0 635 2 species Filifactor alocis 143361 0 630 1 1355 2 1 0 Acetoanaerobium 186831 genus 2 1353 1 0 Acetoanaerobium sticklandii 1511 species 1 0 11509 24 family 20 Lachnospiraceae 186803 2039240 genus 607 1 0 Anaerotignum propionicum 28446 species 607 1 0 4 1725 0 1 1506553 Lachnoclostridium 13 genus 2608895 no rank 303 1 0 species 1834196 Lachnoclostridium sp. YL32 0 1 303 0 219 1 species Lachnoclostridium phocaeense 1871021 0 1190 1 species Lachnoclostridium phytofermentans 66219 2719313 genus 291 1 0 species [Clostridium] bolteae 208479 0 291 1 0 2 1502 genus 830 185008 Butyrivibrio hungatei species 1 782 0 Butyrivibrio proteoclasticus 43305 species 720 1 0 2 686 0 1 207244 Anaerostipes 5 genus 0 681 1 species Anaerostipes hadrus 649756 0 1 878 genus 28050 species 39485 [Eubacterium] eligens 0 1 878 genus 2569097 0 982 1 0 1 982 species 39488 [Eubacterium] hallii 1 0 809 3 genus 2 Blautia 572511 0 465 1 species Blautia hansenii 1322 342 1 0 2648079 no rank 1796616 Blautia sp. YL58 species 1 342 0 2719231 genus 1 458 0 species [Clostridium] saccharolyticum 84030 0 458 1 1663717 genus 721 1 0 species Herbinix luporum 1679721 0 721 1 1 0 1901 2 genus 4 Cellulosilyticum 698776 Cellulosilyticum lentocellum 29360 species 1897 1 0 1 0 256 2 genus 1 Roseburia 841 Roseburia hominis 301301 species 255 1 0 186928 no rank 2 673 0 [Eubacterium] rectale 39491 species 415 1 0 1 258 0 712991 Lachnospiraceae bacterium oral taxon 500 species 1 0 314 3 family 5 Symbiobacteriaceae 543349 1 genus 2733 Symbiobacterium 0 1 2 309 Symbiobacterium thermophilum 2734 species 308 1 0 1498 7 0 538999 no rank genus 1392389 0 1 213 species Intestinimonas butyriciproducens 1297617 0 213 1 genus 2717089 0 1 264 264 1 0 Mordavella sp. Marseille-P3756 2086584 species 772 4 1 0 Clostridiales Family XIII. Incertae Sedis 543314 family 2 0 1 401 species 143393 [Eubacterium] sulci 86331 Mogibacterium 2 genus 2 369 0 1 species 114527 Mogibacterium diversum 0 1 367 539000 family 249 1 0 genus 73918 0 1 249 1 249 0 73919 Thermaerobacter marianensis species 2304686 family 5601 11 0 1 495 0 2304693 genus [Clostridium] thermosuccinogenes 84032 species 495 1 0 genus 2 Mageeibacillus 1637257 1 0 195 2 1 193 0 884684 Mageeibacillus indolicus species 0 2701 3 genus 2304692 species 288965 [Clostridium] clariflavum 0 1 972 590 1 0 Ruminiclostridium thermocellum 1515 species 1 1139 0 1677857 Herbivorax saccincola species 795 1 0 236752 genus species Fastidiosipila sanguinis 236753 0 795 1 no rank 2305130 0 177 1 0 1 177 species 1834198 Ruminiclostridium sp. KB18 genus 2304691 0 379 1 species [Clostridium] stercorarium 1510 0 379 1 1508657 Ruminiclostridium 13 genus 2 859 0 1 1521 [Clostridium] cellulolyticum species 1 846 0 8666 27 1 0 Peptococcaceae 186807 family 29 genus 16 Desulfotomaculum 1562 1 0 1618 5 0 1 635 species 59610 Desulfotomaculum reducens 0 274 1 species Desulfotomaculum ruminis 1564 0 1 381 species 1565 Desulfotomaculum nigrificans 1833852 Desulfotomaculum ferrireducens species 1 312 0 36853 Desulfitobacterium 20 genus 5 1477 0 1 species 142877 Desulfitobacterium metallireducens 0 1 388 Desulfitobacterium hafniense 49338 species 409 1 0 0 353 1 species Desulfitobacterium dehalogenans 36854 species 233055 Desulfitobacterium dichloroeliminans 0 1 307 2 384 0 1 51196 Syntrophobotulus 2 genus 0 1 382 species 51197 Syntrophobotulus glycolicus 0 1 581 genus 2282740 581 1 0 Desulfotomaculum gibsoniae 102134 species genus 4 Desulfosporosinus 79206 1 0 2001 4 0 1 776 species 1563 Desulfosporosinus orientis species Desulfosporosinus meridiei 79209 0 610 1 885581 Desulfosporosinus acidiphilus species 1 611 0 471826 Candidatus Desulforudis 10 genus 2 198 0 1 471827 Candidatus Desulforudis audaxviator species 1 188 0 genus 51514 0 1 627 species Dehalobacterium formicoaceticum 51515 0 627 1 2282742 genus 1 608 0 1 608 0 58138 Desulfotomaculum acetoxidans species 342 1 0 278993 genus species 863643 Thermincola potens 0 1 342 21 genus 56112 Dehalobacter 0 1 4 801 species Dehalobacter restrictus 55583 0 276 1 no rank 2635733 0 2 504 Dehalobacter sp. DCA 1147129 species 244 1 0 0 1 260 species 1131462 Dehalobacter sp. CF 3 family 68298 Syntrophomonadaceae 0 1 5 800 2 241 0 1 129001 Syntrophothermus 1 genus Syntrophothermus lipocalidus 86170 species 240 1 0 862 Syntrophomonas 2 genus 2 556 0 1 Syntrophomonas wolfei 863 species 554 1 0 216572 Oscillospiraceae 1 family 3 257 0 1 0 1 2 256 1 genus 459786 Oscillibacter 255 1 0 Oscillibacter valericigenes 351091 species family 31984 0 2 210 2697 Heliobacterium 5 genus 2 210 0 1 35701 Heliobacterium modesticaldum species 1 205 0 186806 Eubacteriaceae 5 family 5 1625 0 1 1 0 774 2 genus 1 Acetobacterium 33951 773 1 0 Acetobacterium woodii 33952 species 8 genus 1730 Eubacterium 0 1 2 846 1736 Eubacterium limosum species 1 838 0 154 1 0 990719 family 1 154 0 990721 genus 154 1 0 Christensenella massiliensis 1805714 species 11 7832 0 1 53433 Halanaerobiales 28 order 0 1 6 5077 15 family 972 Halanaerobiaceae 1 0 783 2 genus 19 Halothermothrix 32636 species Halothermothrix orenii 31909 0 764 1 1 0 4279 3 genus 14 Halanaerobium 2330 species 656519 Halanaerobium hydrogeniformans 0 1 1988 species 2331 Halanaerobium praevalens 0 1 2277 1 0 2727 4 family 12 Halobacteroidaceae 53434 genus 28186 0 1 1007 0 1 1007 species 28187 Acetohalobium arabaticum 0 1 2 1708 2 genus 42417 Halobacteroides species Halobacteroides halobius 42422 0 1706 1 485256 Natranaerobiales 5 order 4 1085 0 1 2 family 485255 Natranaerobiaceae 0 1 3 1080 Natranaerobius 375928 genus 10 1078 2 1 0 375929 Natranaerobius thermophilus species 1 1068 0 0 3 846 order 2770089 2770092 family 633 1 0 1 633 0 499228 genus species 499229 Tepidanaerobacter acetatoxydans 0 1 633 2770093 family 213 2 0 genus 1 Thermosediminibacter 291988 1 0 213 2 212 1 0 Thermosediminibacter oceani 291990 species 1 0 20771 35 order 22 Thermoanaerobacterales 68295 2 1103 0 227387 family 1103 2 1 0 Thermodesulfobium 227388 genus 1 Thermodesulfobium narugense 184064 species 1102 1 0 1 0 9570 13 family 11 Thermoanaerobacterales Family III. Incertae Sedis 543371 28895 Thermoanaerobacterium 3 genus 3 2721 0 1 0 1770 1 species Thermoanaerobacterium thermosaccharolyticum 1517 species Thermoanaerobacterium xylanolyticum 29329 0 948 1 44000 Caldicellulosiruptor 97 genus 9 6838 0 1 Caldicellulosiruptor lactoaceticus 52766 species 703 1 0 881 1 0 Caldicellulosiruptor obsidiansis 717609 species 55205 Caldicellulosiruptor owensensis species 1 848 0 1 779 0 52765 Caldicellulosiruptor kristjanssonii species 0 1 896 species 44001 Caldicellulosiruptor saccharolyticus species 31899 Caldicellulosiruptor bescii 0 1 814 413889 Caldicellulosiruptor kronotskyensis species 1 962 0 1 858 0 413888 Caldicellulosiruptor hydrothermalis species family 22 Thermoanaerobacteraceae 186814 1 0 9823 18 genus 129957 0 1 425 425 1 0 Carboxydothermus hydrogenoformans 129958 species 42857 no rank 4 270 0 1 0 115 2 genus 2 Ammonifex 42837 0 113 1 species Ammonifex degensii 42838 155 2 1 0 Moorella 44260 genus 8 147 1 0 Moorella thermoacetica 1525 species 140458 genus 172 1 0 1 172 0 85874 Thermacetogenium phaeum species 0 1 9 8201 400 genus 1754 Thermoanaerobacter 0 1 931 species 496866 Thermoanaerobacter pseudethanolicus 108150 Thermoanaerobacter italicus species 1 1028 0 583357 Thermoanaerobacter mathranii species 1 978 0 species 46354 Thermoanaerobacter wiegelii 0 1 1090 Thermoanaerobacter kivui 2325 species 959 1 0 no rank 2636821 0 2 1883 0 1 937 species 399726 Thermoanaerobacter sp. X514 Thermoanaerobacter sp. X513 573062 species 946 1 0 0 1 932 species 29323 Thermoanaerobacter brockii 249529 Caldanaerobacter 3 genus 2 733 0 1 0 730 1 species Caldanaerobacter subterraneus 911092 543372 family 1 253 0 1 253 0 252965 genus 1 253 0 252966 Mahella australiensis species no rank 33974 0 156 2 1 genus 1930845 Ndongobacter 0 1 2 156 Ndongobacter massiliensis 1871025 species 155 1 0 5 class 909932 Negativicutes 0 1 28 6698 order 23 Veillonellales 1843489 1 0 2079 8 13 family 31977 Veillonellaceae 0 1 7 2056 562 1 0 39948 genus 0 562 1 species Dialister pneumosintes 39950 906 genus 1 315 0 0 315 1 species Megasphaera elsdenii 907 29465 Veillonella 13 genus 3 1037 0 1 29466 Veillonella parvula species 1 770 0 species Veillonella rodentium 248315 0 254 1 genus 909928 0 129 1 1702287 Negativicoccus massiliensis species 1 129 0 909929 Selenomonadales 21 order 14 4263 0 1 family 12 Selenomonadaceae 1843491 1 0 1888 9 0 1 2 986 3 genus 158846 Megamonas 158847 Megamonas hypermegale species 1 983 0 Selenomonas 970 genus 8 890 6 1 0 Selenomonas sputigena 69823 species 170 1 0 204 1 0 Selenomonas ruminantium 971 species 2637378 no rank 3 508 0 Selenomonas sp. oral taxon 920 1884263 species 142 1 0 species 712538 Selenomonas sp. oral taxon 478 0 1 192 174 1 0 Selenomonas sp. oral taxon 136 713030 species family 7 Sporomusaceae 1843490 1 0 2354 4 1 0 2347 3 genus 10 Pelosinus 365348 0 1189 1 no rank 2629460 0 1 1189 species 484770 Pelosinus sp. UFO1 1 1148 0 365349 Pelosinus fermentans species Acidaminococcales 1843488 order 5 351 5 1 0 346 4 1 0 Acidaminococcaceae 909930 family 1 3 345 0 1 904 Acidaminococcus 1 genus 187327 Acidaminococcus intestini species 1 156 0 0 188 1 species Acidaminococcus fermentans 905 1676648 Limnochordia 3 class 4 286 0 1 1 0 283 3 order 2 Limnochordales 1676649 1676650 family 281 2 0 genus 6 Limnochorda 1676651 1 0 281 2 0 1 275 species 1555112 Limnochorda pilosa 526524 class 9 2355 0 526525 Erysipelotrichales 15 order 9 2355 0 1 13 family 128827 Erysipelotrichaceae 0 1 8 2340 no rank 544447 0 289 1 0 289 1 species Erysipelotrichaceae bacterium I46 1834207 1089 3 1 0 Erysipelothrix 1647 genus 3 species 1648 Erysipelothrix rhusiopathiae 0 1 521 0 1 565 species 1514105 Erysipelothrix larvae 820 1 0 191303 genus 0 1 820 no rank 2638206 species 1712675 Turicibacter sp. H121 0 1 820 1 genus 1729679 Faecalibaculum 0 1 2 129 Faecalibaculum rodentium 1702221 species 128 1 0 0 1 427 277602 263 class 91061 Bacilli 0 1 165 87252 200 order 186826 Lactobacillales 17 6803 0 1 81850 Leuconostocaceae 7 family Leuconostoc 1243 genus 19 4371 9 1 0 species Leuconostoc garlicum 255248 0 175 1 1 730 0 1252 Leuconostoc carnosum species 0 1124 1 species Leuconostoc mesenteroides 1245 Leuconostoc kimchii 136609 species 380 1 0 no rank 2685106 0 1 463 1 463 0 979982 Leuconostoc sp. C2 species species Leuconostoc citreum 33964 0 416 1 0 206 1 species Leuconostoc lactis 1246 species 1244 Leuconostoc gelidum 0 1 858 Weissella 46255 genus 13 1969 6 1 0 427 1 0 Weissella paramesenteroides 1249 species species Weissella ceti 759620 0 295 1 0 453 1 species Weissella jogaejeotgali 1631871 species 137591 Weissella cibaria 0 1 321 0 460 1 species Weissella koreensis 165096 0 456 1 genus 46254 species 1247 Oenococcus oeni 0 1 456 0 714 1 no rank 263855 1 714 0 1993866 Lactobacillales bacterium species 11792 20 1 0 Enterococcaceae 81852 family 26 0 1 3 1706 7 genus 2737 Vagococcus 633807 Vagococcus penaei species 1 820 0 519472 Vagococcus teuberi species 1 879 0 67 genus 1350 Enterococcus 0 1 12 7886 species Enterococcus faecium 1352 0 1301 1 species Enterococcus faecalis 1351 0 1412 1 no rank 2608891 0 3 1079 1 353 0 2060307 Enterococcus sp. FDAARGOS_375 species 1 369 0 2060306 Enterococcus sp. FDAARGOS_163 species 0 1 357 species 2057791 Enterococcus sp. CR-Ec1 species 53345 Enterococcus durans 0 1 668 Enterococcus mundtii 53346 species 744 1 0 0 1 366 species 37734 Enterococcus casseliflavus 1 862 0 1354 Enterococcus hirae species 2005703 Enterococcus wangshanyuanii species 1 694 0 Enterococcus thailandicus 417368 species 693 1 0 genus 1 Melissococcus 33969 1 0 1086 2 1 1085 0 33970 Melissococcus plutonius species 0 1 2 1088 6 genus 51668 Tetragenococcus 0 1 1082 species 51669 Tetragenococcus halophilus Streptococcaceae 1300 family 39 28529 49 1 0 1 0 23198 43 genus 250 Streptococcus 1301 0 292 1 species Streptococcus acidominimus 1326 species 1348 Streptococcus parauberis 0 1 673 0 1 322 species 82348 Streptococcus pluranimalium species Streptococcus mutans 1309 0 853 1 species 1825069 Streptococcus marmotae 0 1 325 1 389 0 1318 Streptococcus parasanguinis species species Streptococcus suis 1307 0 1185 1 0 714 1 species Streptococcus oralis 1303 0 1 269 species 1888195 Streptococcus himalayensis 1 894 0 1302 Streptococcus gordonii species 1 958 0 1304 Streptococcus salivarius species 1134 1 0 Streptococcus pyogenes 1314 species Streptococcus lutetiensis 150055 species 405 1 0 0 1 401 species 197614 Streptococcus pasteurianus species 1305 Streptococcus sanguinis 0 1 252 species Streptococcus uberis 1349 0 545 1 Streptococcus merionis 400065 species 274 1 0 1 312 0 1814128 Streptococcus halotolerans species 0 879 1 species Streptococcus mitis 28037 Streptococcus pantholopis 1811193 species 305 1 0 0 308 1 species Streptococcus equinus 1335 species group 119603 0 2 1198 1 440 0 1334 Streptococcus dysgalactiae species 758 1 0 Streptococcus equi 1336 species species Streptococcus gallolyticus 315405 0 916 1 no rank 2608887 0 2160 7 0 1 210 species 1156431 Streptococcus sp. I-G2 248 1 0 Streptococcus sp. A12 1759399 species species Streptococcus sp. FDAARGOS_192 1839799 0 351 1 1 286 0 712633 Streptococcus sp. oral taxon 431 species 0 1 257 species 1902136 Streptococcus sp. NPS 308 0 1 200 species 1156433 Streptococcus sp. I-P16 0 608 1 species Streptococcus sp. 'group B' 1319 1346 Streptococcus iniae species 1 586 0 1 411 0 59310 Streptococcus macedonicus species Streptococcus thermophilus 1308 species 664 1 0 species 1311 Streptococcus agalactiae 0 1 1199 0 330 1 species Streptococcus pseudopneumoniae 257758 102684 Streptococcus infantarius species 1 730 0 0 1 781 species 1313 Streptococcus pneumoniae 248 1 0 Streptococcus cristatus 45634 species 3 2036 0 671232 species group 1 363 0 76860 Streptococcus constellatus species 1338 Streptococcus intermedius species 1 766 0 1328 Streptococcus anginosus species 1 907 0 0 1 5 5292 7 genus 1357 Lactococcus species 1363 Lactococcus garvieae 0 1 728 1366 Lactococcus raffinolactis species 1 291 0 species 1358 Lactococcus lactis 0 1 3660 1364 Lactococcus piscium species 1 606 0 2465 8 1 0 Aerococcaceae 186827 family 3 7 2462 0 1 1375 Aerococcus 19 genus 0 295 1 species Aerococcus urinaehominis 128944 species Aerococcus viridans 1377 0 394 1 species 87541 Aerococcus christensenii 0 1 487 species 119206 Aerococcus sanguinicola 0 1 218 Aerococcus urinae 1376 species 502 1 0 51665 Aerococcus urinaeequi species 1 547 0 5712 11 1 0 Carnobacteriaceae 186828 family 13 2 891 0 1 191769 Marinilactibacillus 4 genus 2632303 no rank 887 1 0 1 887 0 1911586 Marinilactibacillus sp. 15R species 1 0 1131 3 genus 6 Jeotgalibaca 1470540 0 556 1 no rank 2621505 0 1 556 species 1903686 Jeotgalibaca sp. PTS2502 species Jeotgalibaca dankookensis 708126 0 569 1 3677 5 1 0 Carnobacterium 2747 genus 28 species Carnobacterium maltaromaticum 2751 0 1343 1 Carnobacterium inhibens 147709 species 822 1 0 0 2 1484 no rank 257487 Carnobacterium sp. 17-4 208596 species 947 1 0 species 1564681 Carnobacterium sp. CP1 0 1 537 33958 Lactobacillaceae 46 family 58 31037 0 1 genus 2767890 0 1 411 species Lactobacillus hokkaidonensis 1193095 0 411 1 330 1 0 2767892 genus 330 1 0 Lactobacillus paracollinoides 240427 species 3 1695 0 2742598 genus species 97478 Lactobacillus mucosae 0 1 245 1598 Lactobacillus reuteri species 1 1138 0 1 312 0 1613 Lactobacillus fermentum species 0 3698 6 genus 2767879 Lactobacillus ginsenosidimutans 1007676 species 627 1 0 species 1602 Lactobacillus alimentarius 0 1 608 0 694 1 species Lactobacillus allii 1847728 species Lactobacillus crustorum 392416 0 736 1 species 1612 Lactobacillus farciminis 0 1 560 species Lactobacillus heilongjiangensis 1074467 0 473 1 1 230 0 2767876 genus 0 230 1 species Lactobacillus amylophilus 1603 genus 2767885 0 2 1215 28038 Lactobacillus curvatus species 1 458 0 0 757 1 species Lactobacillus sakei 1599 0 385 1 genus 2767877 species Lactobacillus kunkeei 148814 0 385 1 2759736 genus 1437 3 0 Lactobacillus casei 1582 species 527 1 0 species Lactobacillus rhamnosus 47715 0 449 1 Lactobacillus paracasei 1597 species 461 1 0 0 1843 3 genus 2767842 1299 1 0 Lactobacillus plantarum 1590 species 0 1 282 species 1589 Lactobacillus pentosus 0 262 1 species Lactobacillus paraplantarum 60520 0 3 1053 genus 2767893 species Lactobacillus curieae 1138822 0 474 1 species Lactobacillus parabuchneri 152331 0 226 1 Lactobacillus buchneri 1581 species 353 1 0 2767886 genus 3 804 0 0 539 1 species Lactobacillus brevis 1580 0 110 1 species Lactobacillus zymae 267363 0 1 155 species 637971 Lactobacillus koreensis 2767889 genus 966 2 0 0 561 1 species Lactobacillus backii 375175 species Lactobacillus coryniformis 1610 0 405 1 0 1 16 10024 201 genus 1578 Lactobacillus 1587 Lactobacillus helveticus species 1 1095 0 species Lactobacillus johnsonii 33959 0 1449 1 0 594 1 species Lactobacillus kefiranofaciens 267818 0 1 478 species 1600 Lactobacillus acetotolerans Lactobacillus gasseri 1596 species 1229 1 0 species Lactobacillus amylolyticus 83683 0 426 1 0 4 1505 no rank 2620435 species 2099789 Lactobacillus sp. CBA3606 0 1 328 species 2099788 Lactobacillus sp. CBA3605 0 1 399 species 2108362 Lactobacillus sp. D1501 0 1 270 species 1545702 Lactobacillus sp. wkB8 0 1 508 560 1 0 Lactobacillus jensenii 109790 species 0 646 1 species Lactobacillus amylovorus 1604 712 1 0 Lactobacillus delbrueckii 1584 species 52242 Lactobacillus gallinarum species 1 519 0 0 1 610 species 1579 Lactobacillus acidophilus 4 2831 0 2767887 genus 1 474 0 89059 Lactobacillus acidipiscis species Lactobacillus salivarius 1624 species 1873 1 0 1601 Lactobacillus agilis species 1 250 0 1623 Lactobacillus ruminis species 1 234 0 1257 2 0 2767881 genus 53444 Lactobacillus lindneri species 1 744 0 1625 Lactobacillus sanfranciscensis species 1 513 0 genus 7 Pediococcus 1253 1 0 2812 6 919 1 0 Pediococcus pentosaceus 1255 species 1 328 0 1670797 species group 0 328 1 species Pediococcus acidilactici 1254 Pediococcus damnosus 51663 species 548 1 0 1 470 0 114090 Pediococcus inopinatus species species 187452 Pediococcus claussenii 0 1 540 190087 261 1 0 Bacillales 1385 order 455 22424 45 1 0 Paenibacillaceae 186822 family 30 856 3 0 85151 no rank 55079 Aneurinibacillus 1 genus 3 856 0 1 species 1500254 Aneurinibacillus soli 0 1 453 2642329 no rank 402 1 0 0 1 402 species 1450761 Aneurinibacillus sp. XH2 302 1 0 76632 genus 1 302 0 377615 Thermobacillus composti species 0 1 4 2631 4 genus 55080 Brevibacillus 54913 Brevibacillus formosus species 1 430 0 species Brevibacillus brevis 1393 0 701 1 1 1496 0 1465 Brevibacillus laterosporus species 44249 Paenibacillus 166 genus 36 18605 0 1 species 189426 Paenibacillus odorifer 0 1 574 0 509 1 species Paenibacillus peoriae 59893 370 1 0 Paenibacillus terrae 159743 species 1 260 0 1870820 Paenibacillus ihbetae species 734 1 0 Paenibacillus crassostreae 1763538 species 0 391 1 species Paenibacillus xylanexedens 528191 Paenibacillus larvae 1464 species 754 1 0 Paenibacillus kribbensis 172713 species 349 1 0 1 415 0 1616788 Paenibacillus bovis species 162209 Paenibacillus naphthalenovorans species 1 326 0 species Paenibacillus polymyxa 1406 0 2437 1 species Paenibacillus sabinae 365617 0 179 1 species 1126833 Paenibacillus beijingensis 0 1 315 169760 Paenibacillus stellifer species 1 232 0 species 61624 Paenibacillus mucilaginosus 0 1 815 0 6060 13 no rank 185978 1 345 0 1536773 Paenibacillus sp. FSL R7-0331 species 1 266 0 1695218 Paenibacillus sp. 32O-W species 0 1 573 species 1536775 Paenibacillus sp. FSL H7-0737 561 1 0 Paenibacillus sp. FSL P4-0081 1536769 species species Paenibacillus sp. JDR-2 324057 0 327 1 species 1536771 Paenibacillus sp. FSL R5-0912 0 1 382 0 415 1 species Paenibacillus sp. FSL R7-0273 1536772 Paenibacillus sp. lzh-N1 2069255 species 409 1 0 Paenibacillus sp. FSL H7-0357 1536774 species 545 1 0 0 1 489 species 1870819 Paenibacillus sp. BIHB4019 species 1536770 Paenibacillus sp. FSL R5-0345 0 1 680 species 481743 Paenibacillus sp. Y412MC10 0 1 267 0 1 801 species 1566358 Paenibacillus sp. IHBB 10380 0 258 1 species Paenibacillus yonginensis 1462996 1 836 0 414771 Paenibacillus donghaensis species 0 561 1 species Paenibacillus durus 44251 Paenibacillus graminis 189425 species 826 1 0 0 518 1 species Paenibacillus borealis 160799 0 1 395 species group 2044880 0 1 395 species 483937 Paenibacillus riograndensis species 1178515 Paenibacillus swuensis 0 1 325 0 1 26 13779 26 family 186818 Planococcaceae 157226 Jeotgalibacillus 11 genus 2 637 0 1 0 1 626 species 1508404 Jeotgalibacillus malaysiensis 1 0 3265 5 genus 19 Sporosarcina 1569 no rank 2647733 0 670 2 0 1 328 species 1930546 Sporosarcina sp. P37 species 1930764 Sporosarcina sp. P33 0 1 342 0 1677 1 species Sporosarcina ureae 1571 1476 Sporosarcina psychrophila species 1 899 0 3 2062 0 1 648800 Solibacillus 14 genus 0 987 1 no rank 2637870 1 987 0 2048654 Solibacillus sp. R5-41 species 1061 1 0 Solibacillus silvestris 76853 species genus 11 Kurthia 1649 1 0 930 2 2644826 no rank 1 919 0 species Kurthia sp. 11kri321 1750719 0 919 1 805 1 0 648802 genus Rummeliibacillus stabekisii 241244 species 805 1 0 6054 12 1 0 Planococcus 1372 genus 42 0 551 1 species Planococcus maritimus 192421 0 1 153 species 1038856 Planococcus plakortidis 0 684 1 species Planococcus donghaensis 414778 0 1025 2 no rank 2662419 1526927 Planococcus sp. PAMC 21323 species 1 704 0 species 2058136 Planococcus sp. MB-3u-03 0 1 321 species Planococcus sp. L10.15 1302659 0 817 1 species 1374 Planococcus kocurii 0 1 643 1 406 0 161360 Planococcus antarcticus species species Planococcus halocryophilus 1215089 0 799 1 0 273 1 species Planococcus rifietoensis 200991 Planococcus faecalis 1598147 species 661 1 0 0 9 2289 no rank 539002 no rank 539738 0 2 905 2 genus 1378 Gemella 0 1 2 905 no rank 2624949 0 903 1 1785995 Gemella sp. oral taxon 928 species 1 903 0 no rank 539742 0 1384 7 0 1 7 1384 23 genus 33986 Exiguobacterium 0 174 1 species Exiguobacterium sibiricum 332410 0 1 198 species 132920 Exiguobacterium antarcticum 2644629 no rank 4 989 0 species 1849031 Exiguobacterium sp. U13-1 0 1 303 Exiguobacterium sp. AT1b 360911 species 189 1 0 1 289 0 1224749 Exiguobacterium sp. ZWU0009 species species Exiguobacterium sp. MH3 1399115 0 208 1 90964 Staphylococcaceae 57 family 41 42932 0 1 0 270 1 genus 45669 0 270 1 species Salinicoccus halodurans 407035 39867 33 1 0 Staphylococcus 1279 genus 314 0 1 569 species 155085 Staphylococcus lutrae 0 1 476 species 1294 Staphylococcus muscae 0 1 749 species 283734 Staphylococcus pseudintermedius species 29388 Staphylococcus capitis 0 1 1233 308354 Staphylococcus simiae species 1 1380 0 species Staphylococcus saprophyticus 29385 0 1151 1 0 1 2598 species 1282 Staphylococcus epidermidis 29382 Staphylococcus cohnii species 1 1221 0 Staphylococcus nepalensis 214473 species 1129 1 0 0 1 1063 species 29384 Staphylococcus kloosii 0 1134 1 species Staphylococcus stepanovicii 643214 0 1388 1 species Staphylococcus argenteus 985002 1286 Staphylococcus simulans species 1 827 0 1014 1 0 Staphylococcus lugdunensis 28035 species 0 1 370 species 170573 Staphylococcus pettenkoferi species 45972 Staphylococcus pasteuri 0 1 2803 1031 1 0 91994 no rank 1 1031 0 1715860 Staphylococcus sp. AntiMn-1 species species 61015 Staphylococcus succinus 0 1 1007 4115 1 0 Staphylococcus aureus 1280 species Staphylococcus hyicus 1284 species 731 1 0 0 1 815 species 985762 Staphylococcus agnetis 70255 Staphylococcus condimenti species 1 958 0 0 1 868 species 46127 Staphylococcus felis 1399 1 0 Staphylococcus sciuri 1296 species 1288 Staphylococcus xylosus species 1 1938 0 601 1 0 Staphylococcus piscifermentans 70258 species species 1283 Staphylococcus haemolyticus 0 1 1232 0 1 1421 species 246432 Staphylococcus equorum species 1290 Staphylococcus hominis 0 1 1407 species Staphylococcus carnosus 1281 0 1054 1 1 1033 0 1292 Staphylococcus warneri species 0 838 1 species Staphylococcus schleiferi 1295 genus 9 Macrococcus 69965 1 0 1914 4 2619255 no rank 1 764 0 764 1 0 Macrococcus sp. IME1552 1898474 species 1 542 0 1855823 Macrococcus canis species Macrococcus caseolyticus 69966 species 599 1 0 genus 6 Auricoccucs 2005363 1 0 824 2 1 818 0 1849491 Auricoccus indicus species 9 family 186824 Thermoactinomycetaceae 0 1 3 184 1677050 Novibacillus 3 genus 2 175 0 1 species 1471761 Novibacillus thermophilus 0 1 172 1 0 1793 8 family 7 Alicyclobacillaceae 186823 genus 3 Kyrpidia 1129704 1 0 600 3 Kyrpidia tusciae 33943 species 344 1 0 species Kyrpidia sp. EA-1 2055160 0 253 1 10 genus 432330 Tumebacillus 0 1 3 772 species Tumebacillus algifaecis 1214604 0 464 1 0 298 1 species Tumebacillus avium 1903704 0 414 1 genus 29330 0 1 414 species 405212 Alicyclobacillus acidocaldarius 9 6581 0 1 186820 Listeriaceae 14 family Brochothrix 2755 genus 9 784 2 1 0 2756 Brochothrix thermosphacta species 1 775 0 0 1 6 5783 58 genus 1637 Listeria 1640 Listeria seeligeri species 1 579 0 0 739 1 species Listeria innocua 1642 0 1 864 species 1643 Listeria welshimeri species 1638 Listeria ivanovii 0 1 1367 2176 1 0 Listeria monocytogenes 1639 species 186821 family 1 357 0 no rank 663587 0 357 1 [Bacillus] selenitireducens 85683 species 357 1 0 0 1 118 99293 149 family 186817 Bacillaceae 84406 Virgibacillus 47 genus 7 6388 0 1 no rank 2620237 0 2 2165 0 1028 1 species Virgibacillus sp. SK37 403957 1137 1 0 Virgibacillus sp. 6R 1911587 species Virgibacillus necropolis 163877 species 1090 1 0 2017483 Virgibacillus phasianinus species 1 925 0 species Virgibacillus pantothenticus 1473 0 1219 1 species 1482 Virgibacillus halodenitrificans 0 1 942 29331 Amphibacillus 4 genus 2 818 0 1 species Amphibacillus xylanus 1449 0 814 1 24 genus 400634 Lysinibacillus 0 1 5 6091 species Lysinibacillus sphaericus 1421 0 2899 1 2636778 no rank 1 1096 0 1 1096 0 2072025 Lysinibacillus sp. YS11 species 1 1073 0 28031 Lysinibacillus fusiformis species 0 1 999 species 1145276 Lysinibacillus varians genus 459532 0 1 441 species Terribacillus aidingensis 586416 0 441 1 1 0 3607 6 genus 11 Anoxybacillus 150247 0 611 1 species Anoxybacillus gonensis 198467 0 1 568 species 294699 Anoxybacillus amylolyticus 1369 2 0 2639704 no rank 702 1 0 Anoxybacillus sp. B2M1 1490052 species 1490057 Anoxybacillus sp. B7M1 species 1 667 0 33934 Anoxybacillus flavithermus species 1 1048 0 2 genus 175304 Lentibacillus 0 1 2 481 Lentibacillus amyloliquefaciens 1472767 species 479 1 0 Fictibacillus 1329200 genus 4 1295 3 1 0 1 617 0 255247 Fictibacillus arsenicus species 674 1 0 Fictibacillus phosphorivorans 1221500 species genus 45667 0 1087 2 0 1 528 species 402384 Halobacillus mangrovi 1 559 0 1570 Halobacillus halophilus species 3 genus 182709 Oceanobacillus 0 1 2 1889 Oceanobacillus iheyensis 182710 species 1886 1 0 2675230 genus 2 2104 0 Bacillus kochii 859143 species 1263 1 0 0 1 841 species 665099 Bacillus oceanisediminis Salimicrobium 351195 genus 1 229 2 1 0 Salimicrobium jeotgali 1230341 species 228 1 0 1906945 Parageobacillus 1 genus 2 583 0 1 species 1426 Parageobacillus thermoglucosidasius 0 1 582 genus 1165 Bacillus 1386 1 0 62500 58 185979 no rank 6332 19 0 178 1 0 Bacillus sp. MD-5 2009331 species 1574141 Bacillus sp. YP1 species 1 151 0 species Bacillus sp. Pc3 1446792 0 149 1 0 1 63 species 2049935 Bacillus sp. Lzh-5 0 830 1 species Bacillus sp. X1(2014) 1565991 0 300 1 species Bacillus sp. 1s-1 2026248 Bacillus sp. JS 1127744 species 170 1 0 species 98228 Bacillus sp. OxB-1 0 1 282 species 1774743 Bacillus sp. SDLI1 0 1 194 Bacillus sp. FJAT-14266 1837130 species 339 1 0 species Bacillus sp. IHB B 7164 1827146 0 1093 1 121 1 0 Bacillus sp. (in: Bacteria) 1409 species 756828 Bacillus sp. WP8 species 1 552 0 species Bacillus sp. 275 1941347 0 159 1 563169 Bacillus sp. SJ-10 species 1 132 0 1 67 0 1570330 Bacillus sp. BH072 species species 666686 Bacillus sp. 1NLA3E 0 1 1095 0 1 302 species 1856406 Bacillus sp. H15-1 155 1 0 Bacillus sp. LM 4-2 1628753 species 0 491 1 species Bacillus glycinifermentans 1664069 0 798 1 species Bacillus methanolicus 1471 0 588 1 species group 1792192 588 1 0 Bacillus altitudinis 293387 species 1479 Bacillus smithii species 1 480 0 632773 Bacillus beveridgei species 1 323 0 1413 Bacillus cellulosilyticus species 1 1213 0 465 1 0 Bacillus xiamenensis 1178537 species species group 86661 0 10 28728 0 1 1117 species 1392 Bacillus anthracis species 155322 Bacillus toyonensis 0 1 812 1 9511 0 1396 Bacillus cereus species species Bacillus mycoides 1405 0 3678 1 943 1 0 Bacillus cytotoxicus 580165 species 0 3 2729 no rank 2750818 0 758 1 species Bacillus sp. ABP14 1892404 species 1839798 Bacillus sp. FDAARGOS_235 0 1 1154 Bacillus sp. HBCD-sjtu 2053832 species 817 1 0 914 1 0 Bacillus bombysepticus 658666 species Bacillus thuringiensis 1428 species 9024 1 0 0 1102 1 species Bacillus aryabhattai 412384 species 33932 Bacillus cohnii 0 1 1495 species 1398 Bacillus coagulans 0 1 634 species 135735 Bacillus endophyticus 0 1 1577 2370 1 0 Bacillus pumilus 1408 species 86664 Bacillus flexus species 1 1197 0 species Bacillus horikoshii 79883 0 663 1 1 399 0 324767 Bacillus infantis species 0 138 1 species Bacillus gibsonii 79881 3277 1 0 Bacillus megaterium 1404 species 0 1 1200 species 561879 Bacillus safensis 0 6740 9 species group 653685 1423 Bacillus subtilis species 1 2700 0 1 436 0 1648923 Bacillus paralicheniformis species 0 3 1959 species subgroup 1938374 914 1 0 Bacillus velezensis 492670 species 0 1 863 species 1390 Bacillus amyloliquefaciens 659243 Bacillus siamensis species 1 182 0 species Bacillus sonorensis 119858 0 303 1 0 615 1 species Bacillus atrophaeus 1452 Bacillus licheniformis 1402 species 666 1 0 0 61 1 species Bacillus vallismortis 72361 1 1125 0 1547283 Bacillus weihaiensis species 125 genus 129337 Geobacillus 0 1 15 4509 species 33940 Geobacillus thermodenitrificans 0 1 404 Geobacillus subterraneus 129338 species 177 1 0 no rank 2642459 0 6 1908 species 691437 Geobacillus sp. C56-T3 0 1 351 1 540 0 581103 Geobacillus sp. Y4.1MC1 species species Geobacillus sp. GHH01 1233873 0 125 1 631 1 0 Geobacillus sp. WCH70 471223 species species 544556 Geobacillus sp. Y412MC61 0 1 132 species 550542 Geobacillus sp. Y412MC52 0 1 129 0 4 1326 species group 1505648 169283 Geobacillus lituanicus species 1 170 0 Geobacillus thermocatenulatus 33938 species 228 1 0 0 667 1 species Geobacillus thermoleovorans 33941 Geobacillus kaustophilus 1462 species 261 1 0 species Geobacillus genomosp. 3 1921421 0 204 1 Geobacillus stearothermophilus 1422 species 365 1 0 2675229 genus 2 2020 0 435 1 0 Bacillus muralis 264697 species species 1478 Bacillus simplex 0 1 1585 5 4273 0 2675234 genus 79880 Bacillus clausii species 1 824 0 300825 Bacillus lehensis species 1 887 0 1 429 0 86665 Bacillus halodurans species species 199441 Bacillus krulwichiae 0 1 1291 species Bacillus pseudofirmus 79885 0 842 1 1055323 genus 1 829 0 33936 Aeribacillus pallidus species 1 829 0 4535 38 0 200795 phylum 1 0 579 6 class 5 Thermomicrobia 189775 order 189776 0 154 2 189777 Thermomicrobiaceae 2 family 2 154 0 1 0 1 152 genus 499 0 1 152 species 500 Thermomicrobium roseum 0 3 420 subclass 85000 0 1 3 420 6 order 85001 Sphaerobacterales suborder 255728 0 414 2 0 2 414 family 85002 0 1 2 414 2 genus 2056 Sphaerobacter 1 412 0 2057 Sphaerobacter thermophilus species class 7 Chloroflexia 32061 1 0 1439 10 9 1432 0 1 32064 Chloroflexales 11 order 0 886 4 suborder 1508594 0 886 4 family 1106 1 0 886 4 genus 7 Chloroflexus 1107 250 species 1108 Chloroflexus aurantiacus 0 1 2 500 480224 Chloroflexus sp. Y-400-fl strain 1 250 0 Chloroflexus aggregans 152260 species 379 1 0 1508595 suborder 535 4 0 1 family 1508635 Roseiflexaceae 0 1 4 535 Roseiflexus 120961 genus 2 534 3 1 0 Roseiflexus castenholzii 120962 species 278 1 0 no rank 2609473 0 1 254 254 1 0 Roseiflexus sp. RS-1 357808 species 5 665 0 292625 class 4 order 292629 Anaerolineales 0 1 5 665 Anaerolineaceae 292628 family 3 661 4 1 0 0 1 275 genus 2019482 species Brevefilum fermentans 1986204 0 275 1 1 186 0 1324991 no rank species 1889813 Anaerolineaceae bacterium oral taxon 439 0 1 186 1 197 0 233189 genus species 167964 Anaerolinea thermophila 0 1 197 4 340 0 1 475962 Caldilineae 1 class 475963 order 339 3 0 2 family 475964 Caldilineaceae 0 1 3 339 233191 Caldilinea 2 genus 2 337 0 1 133453 Caldilinea aerophila species 1 335 0 0 1 8 818 1 class 301297 Dehalococcoidia 1 0 526 4 order 2 Dehalococcoidales 1202465 family 1202464 0 524 3 Dehalococcoides 61434 genus 1 524 3 1 0 383 1 0 Dehalococcoides mccartyi 61435 species no rank 237581 0 140 1 species Dehalococcoides sp. UCH007 1522671 0 140 1 11 genus 670486 Dehalogenimonas 0 1 3 291 0 1 147 species 1839801 Dehalogenimonas formicexedens 0 1 133 species 552810 Dehalogenimonas lykanthroporepellens 1 0 694 5 class 8 Ardenticatenia 1382928 1382929 Ardenticatenales 17 order 4 686 0 1 3 669 0 1 1382930 Ardenticatenaceae 2 family 1 0 667 2 genus 6 Candidatus Promineofilum 1988031 species Candidatus Promineofilum breve 1806508 0 661 1 0 1 102 68021 5 phylum 544448 Tenericutes 168 class 31969 Mollicutes 0 1 97 64743 186328 Entomoplasmatales 57 order 39 28731 0 1 0 1 14 8983 27 family 33925 Entomoplasmataceae genus 87 Mesoplasma 46239 1 0 6104 8 1 832 0 216427 Mesoplasma chauliocola species species Mesoplasma lactucae 138853 0 574 1 225999 Mesoplasma syrphidae species 1 661 0 1586 1 0 Mesoplasma florum 2151 species 1 731 0 324078 Mesoplasma coleopterae species 219745 Mesoplasma tabanidae species 1 891 0 2149 Mesoplasma entomophilum species 1 742 0 Entomoplasma 46238 genus 17 2852 5 1 0 0 290 1 species Entomoplasma freundtii 74700 species Entomoplasma somnilux 215578 0 862 1 species Entomoplasma luminosum 214888 0 736 1 Entomoplasma melaleucae 81459 species 947 1 0 family 41 Spiroplasmataceae 2131 1 0 19691 24 206 genus 2132 Spiroplasma 0 1 23 19650 1 1275 0 216937 Spiroplasma floricola species 0 1 978 species 216936 Spiroplasma diminutum 1 594 0 1114980 Spiroplasma atrichopogonis species 1 851 0 2133 Spiroplasma citri species 2139 Spiroplasma clarkii species 1 939 0 species Spiroplasma cantharicola 362837 0 1165 1 species Spiroplasma chrysopicola 216933 0 592 1 1014 1 0 Spiroplasma culicicola 216935 species species Spiroplasma mirum 2144 0 589 1 712 1 0 Spiroplasma apis 2137 species 0 1 643 species 315358 Spiroplasma eriocheiris 1 825 0 47834 Spiroplasma kunkelii species 0 654 1 species Spiroplasma syrphidicola 216945 1 1217 0 216946 Spiroplasma turonicum species 2145 Spiroplasma taiwanense species 1 1078 0 no rank 2637901 0 1546 2 Spiroplasma sp. NBRC 100390 1914410 species 773 1 0 species Spiroplasma sp. TU-14 1898044 0 773 1 1043 1 0 Spiroplasma helicoides 216938 species 0 1 669 species 2136 Spiroplasma monobiae 1 997 0 216934 Spiroplasma corruscae species species Spiroplasma sabaudiense 216944 0 592 1 216942 Spiroplasma litorale species 1 1471 0 25 order 186329 Acholeplasmatales 0 1 13 6228 0 1 12 6203 30 family 2146 Acholeplasmataceae 0 1 6 2943 30 genus 33926 Candidatus Phytoplasma 1 669 0 85630 species group 669 1 0 Candidatus Phytoplasma mali 37692 species 85632 species group 457 1 0 0 457 1 species Candidatus Phytoplasma australiense 59748 0 1787 3 species group 85620 0 1 567 species 100379 Onion yellows phytoplasma 615 1 0 Aster yellows witches'-broom phytoplasma 229545 species 202462 Maize bushy stunt phytoplasma species 1 605 0 2147 Acholeplasma 21 genus 5 3230 0 1 929 1 0 Acholeplasma oculi 35623 species 61635 Acholeplasma brassicae species 1 421 0 Acholeplasma laidlawii 2148 species 704 1 0 Acholeplasma palmae 38986 species 1155 1 0 2085 Mycoplasmatales 78 order 44 29616 0 1 73 family 2092 Mycoplasmataceae 0 1 43 29538 8631 12 0 2767358 genus 2113 Mycoplasma californicum species 1 362 0 752 1 0 Mycoplasma fermentans 2115 species species 2109 Mycoplasma synoviae 0 1 509 Mycoplasma bovis 28903 species 1442 1 0 706 1 0 Mycoplasma cynos 171284 species 1 519 0 2112 Mycoplasma bovigenitalium species species Mycoplasma pullorum 48003 0 593 1 0 1 655 species 29553 Mycoplasma bovirhinis 866 1 0 Mycoplasma canis 29555 species Mycoplasma arginini 2094 species 623 1 0 2110 Mycoplasma agalactiae species 1 840 0 764 1 0 Mycoplasma pulmonis 2107 species genus 16 Ureaplasma 2129 1 0 1513 3 1 754 0 134821 Ureaplasma parvum species Ureaplasma urealyticum 2130 species 743 1 0 Mycoplasma 2093 genus 229 19321 27 1 0 species Mycoplasma dispar 86660 0 521 1 species Mycoplasma hyorhinis 2100 0 797 1 315 1 0 Mycoplasma haemocanis 136241 species 585 1 0 Mycoplasma gallisepticum 2096 species species 171632 Mycoplasma ovis 0 1 226 2097 Mycoplasma genitalium species 1 362 0 2123 Mycoplasma putrefaciens species 1 866 0 no rank 2683645 0 615 1 0 615 1 species Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 28227 Mycoplasma penetrans species 1 1154 0 0 117 1 species Mycoplasma pneumoniae 2104 Mycoplasma mobile 2118 species 1042 1 0 0 1 383 species 2128 Mycoplasma flocculare Mycoplasma canadense 29554 species 660 1 0 3 5127 0 656088 species group 2105 Mycoplasma leachii species 1 1331 0 1 2290 0 2102 Mycoplasma mycoides species species 2095 Mycoplasma capricolum 0 1 1506 species 50052 Mycoplasma crocodyli 0 1 572 0 1 188 species 65123 Mycoplasma wenyonii 0 607 1 species Mycoplasma parvum 984991 species 45362 Mycoplasma bovoculi 0 1 736 0 1 893 species 51365 Mycoplasma yeatsii 0 678 1 species Mycoplasma haemofelis 29501 2111 Mycoplasma arthritidis species 1 399 0 330 1 0 Mycoplasma suis 57372 species 2098 Mycoplasma hominis species 1 1092 0 827 1 0 Mycoplasma hyopneumoniae 2099 species 2799557 no rank 2 1143 0 4 genus 1912503 Candidatus Izimaplasma 0 1 2 1143 1139 1 0 2624196 no rank 1139 1 0 Candidatus Izimaplasma sp. HR1 1541959 species 2130 2 0 713063 no rank 1911684 Tenericutes bacterium MO-XQ species 1 1153 0 species Tenericutes bacterium MZ-XQ 1911683 0 977 1 clade 1798711 0 159 3537836 35 phylum 1117 Cyanobacteria 0 1 159 3537836 Chroococcidiopsidales 1890505 order 6 1270 4 1 0 family 37 Chroococcidiopsidaceae 1890528 1 0 1264 3 1 0 1227 2 genus 3 Chroococcidiopsis 54298 1 1224 0 54299 Chroococcidiopsis thermalis species 7 order 52604 Pleurocapsales 0 1 8 4926 Dermocarpellaceae 1890498 family 31 4281 4 1 0 Stanieria 102115 genus 16 4250 3 1 0 0 2341 1 no rank 2642663 species Stanieria sp. NIES-3757 1807358 0 2341 1 species Stanieria cyanosphaera 102116 0 1893 1 3 638 0 1 1890500 Hyellaceae 11 family genus 3 Pleurocapsa 44474 1 0 627 2 species Pleurocapsa minor 54308 0 624 1 273 order 1890424 Synechococcales 0 1 58 3467851 1 0 810 3 family 2 Acaryochloridaceae 1890429 155977 Acaryochloris 8 genus 2 808 0 1 155978 Acaryochloris marina species 1 800 0 60 family 1890426 Synechococcaceae 0 1 34 52508 1 0 288 2 genus 1 Thermosynechococcus 146785 1 287 0 146786 Thermosynechococcus elongatus species 1 0 48138 26 genus 625 Synechococcus 1129 Synechococcus lividus 33070 species 296 1 0 0 23 46968 no rank 2626047 species Synechococcus sp. RCC307 316278 0 1311 1 0 293 1 species Synechococcus sp. PCC 7117 195498 1 2632 0 166314 Synechococcus sp. WH 8109 species 335 1 0 Synechococcus sp. PCC 7003 374981 species 1213 1 0 Synechococcus sp. SynAce01 1916956 species 2974 1 0 Synechococcus sp. WH 7803 32051 species species Synechococcus sp. KORDI-52 585425 0 2805 1 species 32049 Synechococcus sp. PCC 7002 0 1 268 Synechococcus sp. PCC 73109 374982 species 245 1 0 242 1 0 Synechococcus sp. PCC 8807 195248 species 2466 1 0 Synechococcus sp. KORDI-100 1280380 species 1 351 0 1827144 Synechococcus sp. NIES-970 species 1173263 Synechococcus sp. PCC 7502 species 1 977 0 species 316279 Synechococcus sp. CC9902 0 1 12738 0 453 1 species Synechococcus sp. PCC 6312 195253 0 1 4612 species 64471 Synechococcus sp. CC9311 1 289 0 1350461 Synechococcus sp. UTEX 2973 species Synechococcus sp. CC9605 110662 species 2772 1 0 0 1 276 species 321327 Synechococcus sp. JA-3-3Ab 0 1 2813 species 84588 Synechococcus sp. WH 8102 Synechococcus sp. KORDI-49 585423 species 3752 1 0 0 1 358 species 321332 Synechococcus sp. JA-2-3B'a(2-13) 0 2793 1 species Synechococcus sp. WH 8103 29410 0 249 1 species Synechococcus elongatus 32046 13034 Dactylococcopsis 2 genus 2 803 0 1 1 801 0 292566 Dactylococcopsis salina species 35 genus 167375 Cyanobium 0 1 3 3219 1597 1 0 Cyanobium gracile 59930 species 2627006 no rank 1587 1 0 Cyanobium sp. NIES-981 1851505 species 1587 1 0 family 2303730 0 2 605 12 genus 170610 Halomicronema 0 1 2 605 0 593 1 species Halomicronema hongdechloris 1209493 4 1640 0 1890428 family 1640 4 1 0 Synechocystis 1142 genus 47 0 3 1593 no rank 2640012 0 1 635 species 1147 Synechocystis sp. PCC 6714 Synechocystis sp. PCC 6803 1148 species 479 1 0 0 1 479 species 2116702 Synechocystis sp. IPPAS B-1465 0 1 3 1057 2 family 1890436 Pseudanabaenaceae 2 genus 1152 Pseudanabaena 0 1 2 1055 1053 1 0 2593292 no rank species 82654 Pseudanabaena sp. PCC 7367 0 1 1053 1213 Prochloraceae 34 family 5 3408329 0 1 154 genus 1218 Prochlorococcus 0 1 4 3408295 0 1 3265993 species 1219 Prochlorococcus marinus 0 142148 2 no rank 2627481 species 1501269 Prochlorococcus sp. MIT 0801 0 1 102905 39243 1 0 Prochlorococcus sp. MIT 0604 1501268 species Leptolyngbyaceae 1890438 family 24 2629 6 1 0 5 2605 0 1 47251 Leptolyngbya 21 genus 2650499 no rank 3 2001 0 1080068 Leptolyngbya sp. O-77 species 1 476 0 0 963 1 species Leptolyngbya sp. PCC 7376 111781 562 1 0 Leptolyngbya sp. NIES-3755 1752064 species 1184 Leptolyngbya boryana species 1 583 0 0 29249 47 subclass 1301283 84 order 1118 Chroococcales 0 1 26 20027 4 3000 0 1 1890449 Microcystaceae 30 family 1 0 2970 3 genus 22 Microcystis 1125 no rank 2643300 0 953 1 1 953 0 1967666 Microcystis sp. MC19 species 0 1995 1 species Microcystis aeruginosa 1126 3 1506 0 1 1890452 Cyanobacteriaceae 2 family genus 9 Cyanobacterium 102234 1 0 1504 2 1495 1 0 Cyanobacterium aponinum 379064 species 10 8241 0 1 1890450 Aphanothecaceae 20 family 2 2847 0 28070 genus 1 1366 0 2546356 species Cyanothece sp. PCC 7424 65393 strain 1366 1 0 0 1481 1 species 2546359 0 1481 1 strain Cyanothece sp. PCC 7822 497965 2 1778 0 2546365 genus 2546366 species 2 1778 0 0 1 899 strain 395962 Cyanothece sp. PCC 8802 Cyanothece sp. PCC 8801 41431 strain 879 1 0 2 847 0 92682 no rank 76023 Halothece 6 genus 2 847 0 1 0 841 1 no rank 2632878 0 1 841 species 65093 Halothece sp. PCC 7418 1272 1 0 263510 genus 0 1 1272 species 2546360 43989 Cyanothece sp. ATCC 51142 strain 1 1272 0 0 1 2 1477 5 genus 1453359 Candidatus Atelocyanobacterium species Candidatus Atelocyanobacterium thalassa 713887 0 1472 1 55 family 1890464 Chroococcaceae 0 1 8 7196 0 1 2 2097 5 genus 268175 Chondrocystis no rank 2648896 0 1 2092 0 1 2092 species 2005460 Chondrocystis sp. NIES-4102 Geminocystis 669357 genus 25 4102 3 1 0 2625037 no rank 4077 2 0 0 1 2194 species 1615909 Geminocystis sp. NIES-3708 species 1617448 Geminocystis sp. NIES-3709 0 1 1883 2 942 0 1 102231 Gloeocapsa 3 genus 939 1 0 2623012 no rank 939 1 0 Gloeocapsa sp. PCC 7428 1173026 species Oscillatoriales 1150 order 129 9222 21 1 0 6 3840 0 1 1892254 Oscillatoriaceae 40 family 1900 2 1 0 Moorea 1155738 genus 7 0 1893 1 species Moorea producens 1155739 Oscillatoria 1158 genus 10 1900 3 1 0 Oscillatoria nigro-viridis 482564 species 1101 1 0 0 1 789 species 118323 Oscillatoria acuminata Cyanothecaceae 1892249 family 76 473 3 1 0 genus 38 Cyanothece 43988 1 0 397 2 359 1 0 2649277 no rank 359 1 0 Cyanothece sp. PCC 7425 395961 species 1103 3 1 0 Gomontiellaceae 1892255 family 1 Crinalium 241421 genus 8 1102 2 1 0 1094 1 0 Crinalium epipsammum 241425 species 20 family 1892251 Coleofasciculaceae 0 1 3 442 0 1 2 422 7 genus 63132 Geitlerinema 0 1 415 no rank 2648775 species Geitlerinema sp. PCC 7407 1173025 0 415 1 0 1 5 3235 28 family 1892252 Microcoleaceae 10 genus 1205 Trichodesmium 0 1 2 2535 2525 1 0 Trichodesmium erythraeum 1206 species 2 672 0 1 44471 Microcoleus 8 genus 2642155 no rank 1 664 0 species Microcoleus sp. PCC 7113 1173027 0 664 1 0 1012 1 no rank 1983111 1 1012 0 718217 cyanobacterium endosymbiont of Epithemia turgida species 1 0 32601 34 order 119 Nostocales 1161 1892263 Hapalosiphonaceae 4 family 3 1520 0 1 4 genus 1190 Fischerella 0 1 2 1516 no rank 494603 0 1 1512 0 1 1512 species 1752063 Fischerella sp. NIES-3754 1219117 no rank 1 1134 0 0 1 1134 species 1940762 Nostocales cyanobacterium HT-58-2 0 9470 8 family 2661849 1186 Calothrix 45 genus 8 9470 0 1 32054 Calothrix parietina species 1 1355 0 6 8070 0 2619626 no rank Calothrix sp. PCC 7507 99598 species 1058 1 0 0 1 1520 species 2005461 Calothrix sp. NIES-4101 0 986 1 species Calothrix sp. 336/3 1337936 0 1 2084 species 2005469 Calothrix sp. NIES-4071 0 1 1446 species 1954171 Calothrix sp. NIES-2098 Calothrix sp. NIES-3974 2005462 species 976 1 0 1 0 2847 3 family 58 Rivulariaceae 1185 2789 2 1 0 Rivularia 373984 genus 15 2676603 no rank 2774 1 0 species Rivularia sp. PCC 7116 373994 0 2774 1 family 60 Nostocaceae 1162 1 0 17511 18 genus 129 Nostoc 1177 1 0 11047 10 species 272131 Nostoc punctiforme 0 1 1142 no rank 2593658 0 7 8605 Nostoc sp. NIES-3756 1751286 species 1200 1 0 1618022 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 1 911 0 1 1311 0 1869241 Nostoc sp. CENA543 species 1261031 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 1 1218 0 species Nostoc sp. PCC 7107 317936 0 1547 1 species 103690 Nostoc sp. PCC 7120 0 1 1019 1 1399 0 28072 Nostoc sp. PCC 7524 species 1306274 Nostoc flagelliforme species 1 1171 0 Anabaena 1163 genus 18 4079 4 1 0 0 1428 1 species Anabaena cylindrica 1165 no rank 2619674 0 2 2633 species 46234 Anabaena sp. 90 0 1 1273 0 1 1360 species 1647413 Anabaena sp. WA102 264688 Trichormus 14 genus 3 2325 0 1 1164 Trichormus azollae species 1 1231 0 species 264691 Trichormus variabilis 0 1 1080 0 1 6 892 5 class 307596 Gloeobacteria 307595 Gloeobacterales 7 order 5 887 0 1 4 880 0 1 1890422 Gloeobacteraceae 20 family 2 genus 33071 Gloeobacter 0 1 3 860 species 33072 Gloeobacter violaceus 0 1 405 species 1416614 Gloeobacter kilaueensis 0 1 453 17 phylum 201174 Actinobacteria 0 1 640 250172 Coriobacteriia 84998 class 23 4052 30 1 0 Coriobacteriales 84999 order 10 1507 14 1 0 7 965 0 1 1643824 Atopobiaceae 10 family 703 4 1 0 Olsenella 133925 genus 10 species Olsenella uli 133926 0 181 1 no rank 2638792 0 1 221 0 1 221 species 712411 Olsenella sp. oral taxon 807 Olsenella sp. Marseille-P2300 1805478 species 291 1 0 0 1 6 genus 1380 Atopobium 246 1 0 2767353 genus 1 246 0 1382 Atopobium parvulum species Coriobacteriaceae 84107 family 4 532 6 1 0 2 182 0 1 102106 Collinsella 3 genus species Collinsella aerofaciens 74426 0 179 1 no rank 84113 0 212 1 1531429 Coriobacteriaceae bacterium 68-1-3 species 1 212 0 134 2 1 0 Coriobacterium 33870 genus 9 species Coriobacterium glomerans 33871 0 125 1 1 0 2522 15 order 40 Eggerthellales 1643822 14 2482 0 1 1643826 Eggerthellaceae 21 family 1 222 0 447020 genus 446660 Adlercreutzia equolifaciens species 1 222 0 6 genus 84111 Eggerthella 0 1 3 581 no rank 2648737 0 166 1 Eggerthella sp. YY7918 502558 species 166 1 0 species 84112 Eggerthella lenta 0 1 409 Phoenicibacter 1981050 genus 7 394 2 1 0 387 1 0 Phoenicibacter massiliensis 1944646 species Slackia 84108 genus 1 158 2 1 0 84110 Slackia heliotrinireducens species 1 157 0 1 0 772 3 genus 14 Gordonibacter 644652 Gordonibacter urolithinfaciens 1335613 species 382 1 0 1841863 Gordonibacter massiliensis species 1 376 0 0 1 162 genus 84162 0 162 1 species Cryptobacterium curtum 84163 genus 79603 0 172 1 species 79604 Denitrobacterium detoxificans 0 1 172 1760 Actinobacteria 746 class 587 241160 0 1 7 4375 0 1 85013 Frankiales 38 order 74712 Frankiaceae 34 family 6 4337 0 1 0 1 5 4303 22 genus 1854 Frankia species Frankia inefficax 298654 0 841 1 Frankia alni 1859 species 1769 1 0 no rank 2632575 0 1 852 0 852 1 species Frankia sp. EAN1pec 298653 1 819 0 106370 Frankia casuarinae species 1 0 500 4 order 3 Nakamurellales 1643684 85031 Nakamurellaceae 2 family 3 497 0 1 Nakamurella 53460 genus 2 495 2 1 0 493 1 0 Nakamurella multipartita 53461 species order 7 Actinomycetales 2037 1 0 2959 19 2049 Actinomycetaceae 23 family 18 2952 0 1 133 2 1 0 Actinotignum 1653174 genus 1 59505 Actinotignum schaalii species 1 132 0 0 173 1 genus 2050 0 173 1 species Mobiluncus curtisii 2051 9 2197 0 1 1654 Actinomyces 27 genus 204 1 0 Actinomyces oris 544580 species 1852377 Actinomyces pacaensis species 1 91 0 0 518 1 species Actinomyces radicidentis 111015 0 992 3 no rank 2609248 1 450 0 712122 Actinomyces sp. oral taxon 414 species 242 1 0 Actinomyces sp. oral taxon 897 2081702 species 300 1 0 Actinomyces sp. Chiba101 1851395 species 0 1 276 species 1960083 Actinomyces gaoshouyii 1 89 0 1912795 Actinomyces sp. VUL4_3 species genus 2 Arcanobacterium 28263 1 0 126 2 species 28264 Arcanobacterium haemolyticum 0 1 124 1 124 0 2529408 genus species Actinomyces meyeri 52773 0 124 1 3 genus 1069494 Trueperella 0 1 2 176 0 1 173 species 1661 Trueperella pyogenes 85007 Corynebacteriales 268 order 160 54070 0 1 0 1 152 no rank 697024 0 152 1 genus 1847725 0 152 1 species Lawsonella clevelandensis 1528099 2 family 85028 Tsukamurellaceae 0 1 4 951 3 949 0 1 2060 Tsukamurella 3 genus species Tsukamurella tyrosinosolvens 57704 0 627 1 2061 Tsukamurella paurometabola species 1 319 0 Gordoniaceae 85026 family 3 2585 9 1 0 genus 36 Gordonia 2053 1 0 2582 8 species 2055 Gordonia terrae 0 1 395 species 84595 Gordonia polyisoprenivorans 0 1 427 0 360 1 species Gordonia phthalatica 1136941 0 607 2 no rank 2657482 species Gordonia sp. KTR9 337191 0 302 1 species Gordonia sp. YC-JH1 2059875 0 305 1 1 415 0 2054 Gordonia bronchialis species species 1004901 Gordonia iterans 0 1 342 35 family 1653 Corynebacteriaceae 0 1 52 11160 1 0 11125 51 genus 125 Corynebacterium 1716 0 1 405 species 1230998 Corynebacterium frankenforstense species 258224 Corynebacterium resistens 0 1 129 146827 Corynebacterium simulans species 1 166 0 155 1 0 Corynebacterium singulare 161899 species species 1697 Corynebacterium ammoniagenes 0 1 128 Corynebacterium glyciniphilum 1404244 species 213 1 0 1 311 0 1727 Corynebacterium variabile species Corynebacterium falsenii 108486 species 228 1 0 species 1050174 Corynebacterium epidermidicanis 0 1 99 0 203 1 species Corynebacterium doosanense 1121358 species Corynebacterium glaucum 187491 0 137 1 0 97 1 species Corynebacterium kroppenstedtii 161879 0 1 166 species 161895 Corynebacterium phocae species Corynebacterium deserti 1408191 0 194 1 species Corynebacterium imitans 156978 0 184 1 species Corynebacterium callunae 1721 0 184 1 species 225326 Corynebacterium halotolerans 0 1 311 43771 Corynebacterium urealyticum species 1 202 0 Corynebacterium ulcerans 65058 species 152 1 0 Corynebacterium mustelae 571915 species 137 1 0 0 261 2 no rank 2624378 Corynebacterium sp. NML98-0116 702967 species 149 1 0 1487956 Corynebacterium sp. ATCC 6931 species 1 112 0 species 42817 Corynebacterium argentoratense 0 1 165 0 1 192 species 136857 Corynebacterium testudinoris Corynebacterium flavescens 28028 species 140 1 0 species Corynebacterium uterequi 1072256 0 889 1 1718 Corynebacterium glutamicum species 1 483 0 169 1 0 Corynebacterium atypicum 191610 species 1 168 0 401472 Corynebacterium ureicelerivorans species species Corynebacterium kutscheri 35755 0 255 1 38305 Corynebacterium vitaeruminis species 1 325 0 0 1 122 species 161896 Corynebacterium camporealensis 0 145 1 species Corynebacterium efficiens 152794 192 1 0 Corynebacterium aquilae 203263 species 191493 Corynebacterium sphenisci species 1 280 0 species 1223514 Corynebacterium humireducens 0 1 339 species 160386 Corynebacterium casei 0 1 170 0 232 1 species Corynebacterium marinum 349751 0 307 1 species Corynebacterium terpenotabidum 89154 Corynebacterium lactis 1231000 species 136 1 0 1719 Corynebacterium pseudotuberculosis species 1 192 0 0 113 1 species Corynebacterium aurimucosum 169292 238 1 0 Corynebacterium jeikeium 38289 species 0 1 276 species 43770 Corynebacterium striatum 0 1 172 species 92706 [Brevibacterium] flavum 0 273 1 species Corynebacterium diphtheriae 1717 species 1705 Corynebacterium stationis 0 1 142 1 362 0 35757 Corynebacterium cystitidis species species Corynebacterium maris 575200 0 252 1 species Corynebacterium crudilactis 1652495 0 209 1 662 4 1 0 Dietziaceae 85029 family 2 660 3 1 0 Dietzia 37914 genus 3 1 221 0 499555 Dietzia timorensis species 2617939 no rank 1 436 0 712270 Dietzia sp. oral taxon 368 species 1 436 0 43 family 1762 Mycobacteriaceae 0 1 57 23410 34 13505 0 1 1763 Mycobacterium 556 genus 0 311 1 species group 2249310 species Mycobacterium shigaense 722731 0 311 1 0 4 1104 species group 77643 865 3 1 0 Mycobacterium tuberculosis 1773 species 326 279 1 0 Mycobacterium bovis 1765 biotype 1 260 0 33894 Mycobacterium africanum biotype species Mycobacterium canettii 78331 0 239 1 0 1 355 species 261524 Mycobacterium liflandii 29311 Mycobacterium haemophilum species 1 224 0 0 1 497 species 482462 Mycobacterium dioxanotrophicus 0 8 4162 species group 120793 Mycobacterium colombiense 339268 species 413 1 0 1 135 0 1138383 Mycobacterium paraintracellulare species species 701042 Mycobacterium marseillense 0 1 283 1764 Mycobacterium avium species 1 2332 0 species 207 Mycobacterium intracellulare 1767 1 0 999 4 subspecies Mycobacterium yongonense 1203599 0 218 1 0 1 439 subspecies 222805 Mycobacterium chimaera 0 135 1 subspecies Mycobacterium indicus pranii 35617 1781 Mycobacterium marinum species 1 637 0 0 1 99 species 1769 Mycobacterium leprae no rank 2642494 0 13 4735 1570328 Mycobacterium sp. NRRL B-3805 species 1 335 0 212767 Mycobacterium sp. JS623 species 1 484 0 0 357 1 species Mycobacterium sp. MCS 164756 Mycobacterium sp. YC-RL4 1682113 species 380 1 0 0 399 1 species Mycobacterium sp. WY10 1920667 0 1 412 species 2051552 Mycobacterium sp. PYR15 380 1 0 Mycobacterium sp. EPa45 1545728 species species 164757 Mycobacterium sp. JLS 0 1 387 1 345 0 1561223 Mycobacterium sp. QIA-37 species Mycobacterium sp. VKM Ac-1817D 1273687 species 302 1 0 411 1 0 Mycobacterium sp. djl-10 1879023 species 385 1 0 Mycobacterium sp. KMS 189918 species species Mycobacterium sp. MOTT36Y 1168287 0 158 1 0 1 418 species 1809 Mycobacterium ulcerans species Mycobacterium kansasii 1768 0 407 1 genus 1073531 0 2 679 1 330 0 1788 Mycobacterium terrae species Mycobacterium sinense 875328 species 349 1 0 genus 1 Hoyosella 697025 1 0 241 2 0 1 240 species 639313 Hoyosella subflava genus 670516 0 5 2925 0 225 1 species Mycobacterium stephanolepidis 1520670 83262 Mycobacterium immunogenum species 1 406 0 216 1 0 Mycobacterium saopaulense 1578165 species 1786 1 0 Mycobacterium abscessus 36809 species Mycobacterium chelonae 1774 species 292 1 0 1866885 genus 13 6017 0 species Mycobacterium smegmatis 1772 0 507 1 Mycobacterium chubuense 1800 species 507 1 0 1 335 0 1795 Mycobacterium neoaurum species 0 1 629 species 1804 Mycobacterium gilvum species Mycobacterium vaccae 1810 0 524 1 1771 Mycobacterium phlei species 1 575 0 0 1 546 species 110539 Mycobacterium vanbaalenii 0 350 1 species Mycobacterium thermoresistibile 1797 Mycobacterium fortuitum 1766 species 297 1 0 0 354 1 species Mycobacterium litorale 758802 0 1 557 species 134601 Mycobacterium goodii species Mycobacterium rhodesiae 36814 0 387 1 449 1 0 Mycobacterium aurum 1791 species family 316606 0 181 1 286801 genus 1 181 0 Segniliparus rotundus 286802 species 181 1 0 14701 31 1 0 Nocardiaceae 85025 family 51 1 0 10085 23 genus 189 Rhodococcus 1827 0 1 484 species 103816 Rhodococcus pyridinivorans Rhodococcus jostii 132919 species 584 1 0 1830 Rhodococcus ruber species 1 709 0 Rhodococcus rhodochrous 1829 species 423 1 0 Rhodococcus erythropolis 1833 species 532 1 0 12 3760 0 192944 no rank species Rhodococcus sp. p52 935199 0 355 1 0 214 1 species Rhodococcus sp. BH4 1807790 species Rhodococcus sp. H-CA8f 1727214 0 230 1 270 1 0 Rhodococcus sp. B7740 1564114 species 0 321 1 species Rhodococcus sp. 2G 1570939 species 1045808 Rhodococcus sp. YL-1 0 1 252 species Rhodococcus sp. PBTS 2 1653479 0 209 1 679318 Rhodococcus sp. WMMA185 species 1 205 0 species 1723645 Rhodococcus sp. 008 0 1 261 Rhodococcus sp. MTM3W5.2 1805827 species 460 1 0 species Rhodococcus sp. WB1 1033922 0 567 1 species Rhodococcus sp. PBTS 1 1653478 0 416 1 Rhodococcus fascians 1828 species 340 1 0 297 1 0 Rhodococcus qingshengii 334542 species species 191292 Rhodococcus aetherivorans 0 1 574 0 1 1835 species 37919 Rhodococcus opacus 1 358 0 43767 Rhodococcus hoagii species Nocardia 1817 genus 40 4565 7 1 0 species Nocardia farcinica 37329 0 778 1 species 37326 Nocardia brasiliensis 0 1 1133 899 1 0 Nocardia cyriacigeorgica 135487 species 455432 Nocardia terpenica species 1 621 0 0 598 1 species Nocardia nova 37330 Nocardia seriolae 37332 species 496 1 0 order 10 Micromonosporales 85008 1 0 8931 20 8921 19 1 0 Micromonosporaceae 28056 family 93 3662 6 1 0 Actinoplanes 1865 genus 21 2626549 no rank 3 2169 0 134676 Actinoplanes sp. SE50/110 species 1 695 0 Actinoplanes sp. SE50 2033844 species 695 1 0 779 1 0 Actinoplanes sp. N902-109 649831 species species Actinoplanes missouriensis 1866 0 784 1 species 196914 Actinoplanes friuliensis 0 1 688 genus 16 Plantactinospora 673534 1 0 2277 4 0 2261 3 no rank 2631981 0 1 739 species 2108470 Plantactinospora sp. BC1 2071627 Plantactinospora sp. BB1 species 1 843 0 679 1 0 Plantactinospora sp. KBS50 2024580 species genus Verrucosispora 84593 0 5 1 1988 4 1 0 Micromonospora 1873 genus 24 0 733 1 species Micromonospora aurantiaca 47850 species Verrucosispora maris 1003110 0 531 1 no rank 2617518 0 700 1 0 700 1 species Micromonospora sp. L5 648999 3 896 0 1 168694 Salinispora 14 genus Salinispora tropica 168695 species 395 1 0 487 1 0 Salinispora arenicola 168697 species no rank 52018 0 1 281 Actinobacteria bacterium IMCC26256 1650658 species 281 1 0 Pseudonocardiales 85010 order 21 20873 41 1 0 140 family 2070 Pseudonocardiaceae 0 1 40 20852 0 1 2 665 3 genus 674734 Alloactinosynnema 0 1 662 no rank 2636053 0 662 1 species Alloactinosynnema sp. L-07 1653480 0 1 6 3134 26 genus 65496 Actinoalloteichus species 340345 Actinoalloteichus hymeniacidonis 0 1 314 0 1 697 species 1470176 Actinoalloteichus hoggarensis no rank 2644606 0 1266 2 species Actinoalloteichus sp. GBA129-24 1612551 0 664 1 1 602 0 2072503 Actinoalloteichus sp. AHMU CJ021 species 0 1 831 species 1612552 Actinoalloteichus sp. ADI127-7 17 genus 40566 Actinosynnema 0 1 3 2037 species Actinosynnema pretiosum 42197 0 950 1 1 1070 0 40567 Actinosynnema mirum species 1 0 5283 8 genus 57 Pseudonocardia 1847 no rank 2619320 0 6 4356 species 1641402 Pseudonocardia sp. HH130629-09 0 1 619 Pseudonocardia sp. EC080619-01 1096856 species 756 1 0 1690815 Pseudonocardia sp. HH130630-07 species 1 738 0 Pseudonocardia sp. AL041005-10 445576 species 722 1 0 0 1 672 species 1096868 Pseudonocardia sp. EC080625-04 species 1688404 Pseudonocardia sp. EC080610-09 0 1 849 0 1 870 species 240495 Pseudonocardia dioxanivorans 4 genus 165301 Lentzea 0 1 2 804 Lentzea guizhouensis 1586287 species 800 1 0 genus 1835 0 768 1 1836 Saccharopolyspora erythraea species 1 768 0 7 4839 0 1 1813 Amycolatopsis 22 genus 208439 Amycolatopsis japonica species 1 735 0 no rank 2618356 0 1320 2 648 1 0 Amycolatopsis sp. BJA-103 1911175 species 672 1 0 Amycolatopsis sp. AA4 1896961 species 0 1 878 species 33910 Amycolatopsis mediterranei species 31958 Amycolatopsis orientalis 0 1 1267 species 1814 Amycolatopsis methanolica 0 1 617 0 1 2 468 3 genus 1851 Saccharomonospora 0 1 465 species 1852 Saccharomonospora viridis Saccharothrix 2071 genus 1 861 2 1 0 species Saccharothrix espanaensis 103731 0 860 1 Kutzneria 43356 genus 10 584 2 1 0 0 574 1 species Kutzneria albida 43357 2 510 0 1 142577 Prauserella 2 genus species 530584 Prauserella marina 0 1 508 759 2 1 0 Kibdelosporangium 2029 genus 2 1 757 0 860235 Kibdelosporangium phytohabitans species order 42 Propionibacteriales 85009 1 0 7637 32 0 1 13 3948 40 family 85015 Nocardioidaceae 1 genus 2040 Aeromicrobium 0 1 2 506 2041 Aeromicrobium erythreum species 1 505 0 1659 4 1 0 Nocardioides 1839 genus 29 2615069 no rank 596 1 0 0 596 1 species Nocardioides sp. JS614 196162 1 397 0 2045452 Nocardioides sp. 78 species species Nocardioides dokdonensis 450734 0 637 1 0 1 2 816 5 genus 2044 Pimelobacter 811 1 0 Pimelobacter simplex 2045 species 0 1 2 565 14 genus 182639 Kribbella species Kribbella flavida 182640 0 551 1 362 2 1 0 Micropruina 116071 genus 1 1 361 0 75385 Micropruina glycogenica species 31957 Propionibacteriaceae 24 family 18 3647 0 1 genus 203133 0 121 1 121 1 0 2633994 no rank 0 121 1 species Propionimicrobium sp. Marseille-P3275 1871034 16 genus 72763 Tessaracoccus 0 1 5 1357 species Tessaracoccus flavescens 399497 0 312 1 species Tessaracoccus flavus 1610493 0 256 1 species 1332264 Tessaracoccus aquimaris 0 1 411 no rank 2635419 0 362 1 362 1 0 Tessaracoccus sp. T2.5-30 1909732 species 4 genus 1743 Propionibacterium 0 1 3 549 0 1 458 species 1744 Propionibacterium freudenreichii 0 87 1 no rank 2608905 1 87 0 671223 Propionibacterium sp. oral taxon 193 species Microlunatus 29404 genus 2 331 2 1 0 29405 Microlunatus phosphovorus species 1 329 0 646 4 1 0 Cutibacterium 1912216 genus 5 Cutibacterium avidum 33010 species 229 1 0 Cutibacterium granulosum 33011 species 182 1 0 1 230 0 1747 Cutibacterium acnes species genus 2801844 0 209 1 0 209 1 species Pseudopropionibacterium propionicum 1750 1912215 genus 410 1 0 410 1 0 Acidipropionibacterium acidipropionici 1748 species 1 0 4884 27 order 16 Bifidobacteriales 85004 26 4868 0 1 31953 Bifidobacteriaceae 32 family 2701 Gardnerella 1 genus 2 602 0 1 species Gardnerella vaginalis 2702 0 601 1 Parascardovia 196082 genus 1 115 2 1 0 Parascardovia denticolens 78258 species 114 1 0 2 153 0 1 196081 Scardovia 1 genus 0 152 1 species Scardovia inopinata 78259 0 1 19 3966 33 genus 1678 Bifidobacterium 1 129 0 1683 Bifidobacterium angulatum species species Bifidobacterium indicum 1691 0 75 1 1 0 196 2 species 72 Bifidobacterium catenulatum 1686 Bifidobacterium kashiwanohense 630129 subspecies 124 1 0 0 296 1 species Bifidobacterium pseudolongum 1694 0 60 1 species Bifidobacterium coryneforme 1687 1 240 0 158787 Bifidobacterium scardovii species 638619 Bifidobacterium actinocoloniiforme species 1 244 0 1680 Bifidobacterium adolescentis species 1 154 0 Bifidobacterium asteroides 1684 species 157 1 0 0 1 246 species 1681 Bifidobacterium bifidum 1 588 0 1685 Bifidobacterium breve species 174 1 0 Bifidobacterium dentium 1689 species 275 1 0 Bifidobacterium choerinum 35760 species 216816 Bifidobacterium longum species 1 656 0 Bifidobacterium thermophilum 33905 species 127 1 0 28026 Bifidobacterium pseudocatenulatum species 1 83 0 233 1 0 Bifidobacterium animalis 28025 species 813 4 1 0 Kineosporiales 622452 order 1 812 3 1 0 Kineosporiaceae 83778 family 4 33981 Kineococcus 3 genus 2 808 0 1 Kineococcus radiotolerans 131568 species 805 1 0 order 5 Actinopolysporales 622450 1 0 302 4 297 3 1 0 Actinopolysporaceae 622451 family 8 289 2 1 0 Actinopolyspora 1849 genus 3 0 1 286 species 414996 Actinopolyspora erythraea 1 0 2390 4 order 15 Catenulisporales 414714 Catenulisporaceae 414877 family 13 2375 3 1 0 0 1 2 2362 12 genus 414878 Catenulispora 1 2350 0 304895 Catenulispora acidiphila species 1 0 5453 12 order 18 Candidatus Nanopelagicales 2039638 2162846 family 5435 11 0 0 1 4 2663 7 genus 2039639 Candidatus Nanopelagicus 1 783 0 1884915 Candidatus Nanopelagicus hibericus species 1884916 Candidatus Nanopelagicus abundans species 1 980 0 1884634 Candidatus Nanopelagicus limnes species 1 893 0 25 genus 622681 Candidatus Planktophila 0 1 7 2772 species Candidatus Planktophila vernalis 1884907 0 487 1 0 1 504 species 1884914 Candidatus Planktophila dulcis 1 240 0 1884904 Candidatus Planktophila sulfonica species species Candidatus Planktophila limnetica 573600 0 638 1 species Candidatus Planktophila lacus 1884913 0 392 1 1884905 Candidatus Planktophila versatilis species 1 486 0 order 14 Streptosporangiales 85012 1 0 5071 16 family 12 Nocardiopsaceae 83676 1 0 1973 7 Nocardiopsis 2013 genus 17 1756 4 1 0 species 280236 Nocardiopsis gilva 0 1 533 53437 Nocardiopsis alba species 1 403 0 species 2014 Nocardiopsis dassonvillei 0 1 803 1 0 205 2 genus 1 Thermobifida 83677 2021 Thermobifida fusca species 1 204 0 3 497 0 1 2012 Thermomonosporaceae 2 family 2 495 0 1 2019 Thermomonospora 7 genus 0 488 1 species Thermomonospora curvata 2020 family 16 Streptosporangiaceae 2004 1 0 2587 5 genus 8 Nonomuraea 83681 1 0 1505 2 1 1497 0 2593643 no rank 1497 1 0 Nonomuraea sp. ATCC 55076 1909395 species genus 4 Streptosporangium 2000 1 0 1066 2 1 1062 0 2001 Streptosporangium roseum species 1643818 no rank 430 2 0 genus 4 Thermobispora 147067 1 0 430 2 426 1 0 Thermobispora bispora 2006 species Streptomycetales 85011 order 130 81878 82 1 0 Streptomycetaceae 2062 family 200 81748 81 1 0 5 4642 0 1 2063 Kitasatospora 34 genus 2633591 no rank 928 1 0 0 928 1 species Kitasatospora sp. MMS16-BH015 2018025 0 1647 1 species Kitasatospora albolonga 68173 Kitasatospora setae 2066 species 1332 1 0 Kitasatospora aureofaciens 1894 species 701 1 0 1 0 76906 75 genus 991 Streptomyces 1883 0 1 753 species 38300 Streptomyces pristinaespiralis 92644 Streptomyces malaysiensis species 1 1004 0 0 1 2227 species 1912 Streptomyces hygroscopicus 1 604 0 1950 Streptomyces peucetius species 0 1 1878 species 54571 Streptomyces venezuelae 0 1 1821 species 68249 Streptomyces pactum 0 1 1856 species 1888 Streptomyces albus Streptomyces gilvosporeus 553510 species 944 1 0 species Streptomyces leeuwenhoekii 1437453 0 721 1 68280 Streptomyces violaceusniger species 1 979 0 species 1916 Streptomyces lividans 0 1 858 962 1 0 Streptomyces lavendulae 1914 species 0 2155 1 species Streptomyces lydicus 47763 Streptomyces chartreusis 1969 species 668 1 0 1201 1 0 Streptomyces formicae 1616117 species 193462 Streptomyces niveus species 1 894 0 408015 Streptomyces xiamenensis species 1 575 0 1 760 0 2049881 Streptomyces sp. XZHG99 species Streptomyces glaucescens 1907 species 735 1 0 1 1101 0 1642299 Streptomyces alfalfae species Streptomyces ambofaciens 1889 species 973 1 0 1 747 0 1038928 Streptomyces xinghaiensis species 679 1 0 Streptomyces violaceoruber 1935 species 1 733 0 146923 Streptomyces parvulus species species Streptomyces scabiei 1930 0 1183 1 species group 1477431 0 3007 2 Streptomyces sampsonii 42239 species 831 1 0 species Streptomyces coelicolor 1902 0 2176 1 Streptomyces albireticuli 1940 species 842 1 0 0 745 1 species Streptomyces collinus 42684 0 805 1 species Streptomyces griseochromogenes 68214 0 1374 2 species group 629295 1 703 0 1482596 species subgroup species 1911 Streptomyces griseus 0 1 703 0 671 1 species subgroup 1482558 1908 Streptomyces globisporus species 1 671 0 33903 Streptomyces avermitilis species 1 904 0 0 793 1 species Streptomyces sp. S10(2016) 1783515 0 735 1 species Streptomyces rubrolavendulae 285473 species Streptomyces fulvissimus 68202 0 671 1 379067 Streptomyces bingchenggensis species 1 1581 0 Streptomyces cattleya 29303 species 757 1 0 species Streptomyces reticuli 1926 0 931 1 0 21964 24 no rank 2593676 species Streptomyces sp. 769 1262452 0 1087 1 0 699 1 species Streptomyces sp. S8 1837283 species 1661694 Streptomyces sp. Tue 6075 0 1 758 species 1972846 Streptomyces sp. Sge12 0 1 1112 0 1 791 species 234612 Streptomyces sp. TN58 0 895 1 species Streptomyces sp. CNQ-509 444103 206662 Streptomyces sp. FR-008 species 1 1044 0 1 892 0 1984801 Streptomyces sp. CLI2509 species 1215 1 0 Streptomyces sp. 3211 1964449 species species Streptomyces sp. Mg1 465541 0 930 1 Streptomyces sp. CdTB01 1725411 species 1055 1 0 686 1 0 Streptomyces sp. 4F 1751294 species species Streptomyces sp. CCM_MD2014 1561022 0 763 1 species Streptomyces sp. fd1-xmd 1812480 0 852 1 1127 1 0 Streptomyces sp. P3 2135430 species Streptomyces sp. SirexAA-E 862751 species 655 1 0 1841249 Streptomyces sp. RTd22 species 1 902 0 species Streptomyces sp. M56 1495638 0 1308 1 Streptomyces sp. PAMC 26508 1265601 species 577 1 0 732 1 0 Streptomyces sp. MOE7 1961713 species 0 1 771 species 2094021 Streptomyces sp. WAC00288 species 1649184 Streptomyces sp. CFMR 7 0 1 732 0 1043 1 species Streptomyces sp. CMB-StM0423 2059884 Streptomyces sp. SAT1 1849967 species 1338 1 0 1 901 0 1901 Streptomyces clavuligerus species species Streptomyces puniciscabiei 164348 0 741 1 Streptomyces cyaneogriseus 68192 species 700 1 0 species 1355015 Streptomyces pluripotens 0 1 612 0 1 973 species 1971 Streptomyces noursei Streptomyces lincolnensis 1915 species 960 1 0 67267 Streptomyces alboflavus species 1 941 0 0 1327 1 species Streptomyces vietnamensis 362257 Streptomyces albulus 68570 species 2756 1 0 Streptomyces pratensis 1169025 species 587 1 0 species Streptomyces autolyticus 75293 0 3297 1 0 1 138 37084 216 order 85006 Micrococcales 35 7737 0 1 1268 Micrococcaceae 33 family 2078575 genus 149 1 0 species Arthrobacter sp. IHBB 11108 1618207 0 149 1 genus 1645 0 141 1 0 1 141 species 1646 Renibacterium salmoninarum genus 32207 0 302 2 Rothia dentocariosa 2047 species 94 1 0 Rothia mucilaginosa 43675 species 208 1 0 15 4101 0 1 1663 Arthrobacter 54 genus 0 3261 12 no rank 235627 species Arthrobacter sp. FB24 290399 0 233 1 Arthrobacter sp. LS16 1690248 species 221 1 0 species 2079227 Arthrobacter sp. PGP41 0 1 619 253 1 0 Arthrobacter sp. U41 1849032 species 1771959 Arthrobacter sp. ATCC 21022 species 1 204 0 Arthrobacter sp. Rue61a 1118963 species 161 1 0 Arthrobacter sp. ERGS1:01 1704044 species 358 1 0 species Arthrobacter sp. YC-RL1 1652545 0 253 1 1 285 0 1494608 Arthrobacter sp. PAMC 25486 species 220 1 0 Arthrobacter sp. ZXY-2 1806905 species species Arthrobacter sp. QXT-31 1357915 0 252 1 2020486 Arthrobacter sp. YN species 1 202 0 502 1 0 Arthrobacter alpinus 656366 species species Arthrobacter crystallopoietes 37928 0 284 1 0 137 1 genus 1868332 137 1 0 Neomicrococcus aestuarii 556325 species 0 1 4 723 3 genus 1742993 Pseudarthrobacter 1 282 0 121292 Pseudarthrobacter sulfonivorans species 1 240 0 361575 Pseudarthrobacter phenanthrenivorans species species Pseudarthrobacter chlorophenolicus 85085 0 198 1 genus 1 Glutamicibacter 1742989 1 0 344 2 0 1 343 species 256701 Glutamicibacter arilaitensis Paenarthrobacter 1742992 genus 1 178 2 1 0 43663 Paenarthrobacter aurescens species 1 177 0 413 1 0 596707 genus 1 413 0 37927 Sinomonas atrocyanea species 0 254 1 genus 1269 1270 Micrococcus luteus species 1 254 0 57493 Kocuria 7 genus 4 962 0 1 Kocuria palustris 71999 species 278 1 0 247 1 0 Kocuria rhizophila 72000 species Kocuria flava 446860 species 430 1 0 family 18 Promicromonosporaceae 85017 1 0 3541 9 genus 13 Cellulosimicrobium 157920 1 0 1646 3 0 822 1 no rank 2624466 0 1 822 species 1980001 Cellulosimicrobium sp. TH-20 Cellulosimicrobium cellulans 1710 species 811 1 0 genus 13 Isoptericola 254250 1 0 1278 3 664 1 0 Isoptericola dokdonensis 372663 species 0 601 1 species Isoptericola variabilis 139208 4 genus 186188 Xylanimonas 0 1 2 599 Xylanimonas cellulosilytica 186189 species 595 1 0 9 family 85020 Dermabacteraceae 0 1 11 3220 0 1 2 252 4 genus 472568 Devriesea 472569 Devriesea agamarum species 1 248 0 genus 23 Brachybacterium 43668 1 0 2793 6 312 1 0 Brachybacterium sp. VR2415 2017485 species 450 1 0 2623841 no rank 1903186 Brachybacterium sp. P6-10-X1 species 1 450 0 2017484 Brachybacterium sp. VM2412 species 1 1137 0 species 1331682 Brachybacterium ginsengisoli 0 1 403 0 1 468 species 43669 Brachybacterium faecium 166 2 1 0 Dermabacter 36739 genus 2 species Dermabacter vaginalis 1630135 0 164 1 9 2299 0 1 85021 Intrasporangiaceae 13 family 1 0 537 2 genus 1 Serinicoccus 265976 1758689 Serinicoccus sp. JLT9 species 1 536 0 genus 5 Intrasporangium 53357 1 0 799 2 53358 Intrasporangium calvum species 1 794 0 1 0 481 2 genus 8 Janibacter 53457 1 473 0 857417 Janibacter indicus species Arsenicicoccus 267408 genus 5 469 2 1 0 464 1 0 2663846 no rank species 1658671 Arsenicicoccus sp. oral taxon 190 0 1 464 family 85 Microbacteriaceae 85023 1 0 14449 45 2 264 0 1 337004 Microcella 1 genus species 279828 Microcella alkaliphila 0 1 263 genus 1759331 0 451 1 0 451 1 species Cnuibacter physcomitrellae 1619308 0 1 2 752 2 genus 110932 Leifsonia species 1575 Leifsonia xyli 0 1 750 1011 1 0 447237 genus 1 1011 0 2626248 no rank species Frondihabitans sp. PAMC 28766 1795630 0 1011 1 genus 57 Microbacterium 33882 1 0 5098 14 0 1 392 species 36805 Microbacterium aurum 162426 Microbacterium hominis species 1 450 0 Microbacterium testaceum 2033 species 388 1 0 2609290 no rank 3098 8 0 314 1 0 Microbacterium sp. TPU 3598 1938334 species 0 280 1 species Microbacterium sp. str. 'China' 2103230 0 1 319 species 367477 Microbacterium sp. XT11 1 310 0 1916917 Microbacterium sp. 1.5R species 1 310 0 1696072 Microbacterium sp. CGR1 species 0 1 681 species 1714373 Microbacterium sp. No. 7 525 1 0 Microbacterium sp. BH-3-3-3 1906742 species 0 359 1 species Microbacterium sp. PAMC 28756 1795053 species Microbacterium chocolatum 84292 0 311 1 species 300019 Microbacterium paludicola 0 1 402 1705353 genus 1 147 0 708131 Aurantimicrobium minutum species 1 147 0 no rank 1655488 0 3 342 342 3 0 1655489 clade 342 3 1 0 Rhodoluna 529883 genus 12 1 170 0 529884 Rhodoluna lacicola species 0 1 160 species 535712 Candidatus Rhodoluna planktonica Microterricola 518733 genus 1 392 2 1 0 species 412690 Microterricola viridarii 0 1 391 Cryobacterium 69578 genus 10 589 3 1 0 2649013 no rank 262 1 0 Cryobacterium sp. LW097 1978566 species 262 1 0 0 1 317 species 670052 Cryobacterium arcticum 1 0 743 3 genus 3 Rathayibacter 33886 0 1 390 species 33888 Rathayibacter tritici Rathayibacter toxicus 145458 species 350 1 0 genus 33877 0 1 606 606 1 0 Agromyces aureus 453304 species 1 154 0 1434032 genus species 1159327 Pontimonas salivibrio 0 1 154 0 1 4 1364 14 genus 2034 Curtobacterium 2 892 0 257496 no rank 0 390 1 species Curtobacterium sp. BH-2-1-1 1905847 0 1 502 species 1561023 Curtobacterium sp. MR_MD2014 species 69373 Curtobacterium pusillum 0 1 458 1573 Clavibacter 48 genus 6 2451 0 1 1 0 2403 5 species 538 Clavibacter michiganensis 28447 subspecies 31963 Clavibacter nebraskensis 0 1 397 1 496 0 31964 Clavibacter sepedonicus subspecies 494 1 0 Clavibacter capsici 1874630 subspecies subspecies 33014 Clavibacter insidiosus 0 1 478 588 3 1 0 Brevibacteriaceae 85019 family 3 1 genus 1696 Brevibacterium 0 1 2 585 species Brevibacterium linens 1703 0 584 1 0 1 3 502 4 family 145360 Sanguibacteraceae 60919 Sanguibacter 4 genus 2 498 0 1 0 1 494 species 60920 Sanguibacter keddieii 161 1 0 85022 family genus 43673 0 1 161 species 43674 Jonesia denitrificans 0 1 161 2301 6 1 0 Cellulomonadaceae 85016 family 4 5 2297 0 1 1707 Cellulomonas 14 genus no rank 2620175 0 503 1 2003551 Cellulomonas sp. PSBB021 species 1 503 0 11 Cellulomonas gilvus species 1 491 0 0 660 1 species Cellulomonas flavigena 1711 species 1708 Cellulomonas fimi 0 1 629 7 family 125316 Beutenbergiaceae 0 1 3 661 84756 Beutenbergia 4 genus 2 654 0 1 0 650 1 species Beutenbergia cavernae 84757 1043 7 1 0 Dermacoccaceae 145357 family 20 2 360 0 1 745364 Luteipulveratus 4 genus 0 1 356 species 571913 Luteipulveratus mongoliensis genus 4 Dermacoccus 57495 1 0 433 2 species 1274 Dermacoccus nishinomiyaensis 0 1 429 genus 1 Kytococcus 57499 1 0 230 2 species Kytococcus sedentarius 1276 0 229 1 577468 no rank 102 2 0 102 2 1 0 Tropheryma 2038 genus 2 species Tropheryma whipplei 2039 0 100 1 0 1 3 264 1 family 85018 Dermatophilaceae 2 263 0 1 1862 Dermatophilus 2 genus species 1863 Dermatophilus congolensis 0 1 261 1765 7 0 1643682 order 85030 Geodermatophilaceae 11 family 7 1765 0 1 0 1 2 609 5 genus 88138 Modestobacter Modestobacter marinus 477641 species 604 1 0 0 1 2 517 11 genus 38501 Blastococcus species 138336 Blastococcus saxobsidens 0 1 506 2 628 0 1 1860 Geodermatophilus 8 genus species Geodermatophilus obscurus 1861 0 620 1 0 535 3 order 85014 85034 Glycomycetaceae 2 family 3 535 0 1 283810 Stackebrandtia 6 genus 2 533 0 1 1 527 0 283811 Stackebrandtia nassauensis species 0 3 183 order 1643683 3 183 0 1 85032 Acidothermaceae 3 family 0 1 2 180 3 genus 28048 Acidothermus 0 1 177 species 28049 Acidothermus cellulolyticus Thermoleophilia 1497346 class 2 2151 5 1 0 4 2149 0 1 588673 Solirubrobacterales 13 order 0 1 3 2136 14 family 320583 Conexibacteraceae 2 2122 0 1 191494 Conexibacter 1 genus species 191495 Conexibacter woesei 0 1 2121 1009 7 1 0 Acidimicrobiia 84992 class 1 1 0 1008 6 order 15 Acidimicrobiales 84993 717 2 0 2448023 family 2 717 0 1 682522 Ilumatobacter 2 genus species 467094 Ilumatobacter coccineus 0 1 715 0 1 3 276 4 family 84994 Acidimicrobiaceae 2 272 0 1 53634 Acidimicrobium 6 genus 53635 Acidimicrobium ferrooxidans species 1 266 0 1 0 621 6 class 1 Rubrobacteria 84995 Rubrobacterales 84996 order 11 620 5 1 0 1 0 609 4 family 5 Rubrobacteraceae 84997 604 3 1 0 Rubrobacter 42255 genus 1 species 49319 Rubrobacter xylanophilus 0 1 339 0 1 264 species 42256 Rubrobacter radiotolerans no rank 1752188 0 4 1162 182 1 0 Actinobacteria bacterium IMCC26077 1848755 species 263 1 0 Actinobacteria bacterium IMCC26103 1848756 species 0 1 501 species 1848754 Actinobacteria bacterium IMCC19121 0 216 1 species Actinobacteria bacterium IMCC25003 1848255 67819 phylum 292 5 0 1 0 292 5 class 13 Fimbriimonadia 1663419 order 1 Fimbriimonadales 1663425 1 0 279 4 0 1 3 278 3 family 1663426 Fimbriimonadaceae 1005038 Fimbriimonas 2 genus 2 275 0 1 1 273 0 1005039 Fimbriimonas ginsengisoli species 0 225 1 no rank 1859062 0 225 1 genus 262406 0 225 1 species Thermobaculum terrenum 166501 1 0 3323 21 phylum 1 Acidobacteria 57723 Blastocatellia 1562566 class 5 363 3 1 0 1 0 358 2 genus 5 Chloracidobacterium 458032 458033 Chloracidobacterium thermophilum species 1 353 0 2959 17 1 0 Acidobacteriia 204432 class 11 0 1 4 665 2 order 332160 Solibacterales 332161 Solibacteraceae 3 family 3 663 0 1 0 1 2 660 14 genus 332162 Candidatus Solibacter 0 646 1 species Candidatus Solibacter usitatus 332163 order 12 Acidobacteriales 204433 1 0 2283 12 Acidobacteriaceae 204434 family 12 2271 11 1 0 Acidobacterium 33973 genus 4 557 2 1 0 0 1 553 species 33075 Acidobacterium capsulatum 1 0 695 3 genus 6 Granulicella 940557 1 255 0 940614 Granulicella mallensis species species Granulicella tundricola 940615 0 434 1 0 1 3 658 5 genus 392733 Terriglobus 870903 Terriglobus saanensis species 1 375 0 Terriglobus roseus 392734 species 278 1 0 2 349 0 1 658061 Candidatus Koribacter 7 genus species Candidatus Koribacter versatilis 658062 0 342 1 6405 10 0 200930 phylum 0 1 10 6405 26 class 68337 Deferribacteres Deferribacterales 191393 order 18 6379 9 1 0 5 family 191394 Deferribacteraceae 0 1 8 6361 1 0 2473 2 genus 5 Deferribacter 53572 1 2468 0 197162 Deferribacter desulfuricans species 1 genus 545865 Calditerrivibrio 0 1 2 982 477976 Calditerrivibrio nitroreducens species 1 981 0 1 2288 0 2351 genus 2352 Flexistipes sinusarabici species 1 2288 0 117999 Denitrovibrio 17 genus 2 613 0 1 species 118000 Denitrovibrio acetiphilus 0 1 596 0 3 1206 no rank 2323 0 1206 3 clade 1783234 95901 clade 1064 2 0 0 1064 2 class 2497643 0 1064 2 order 2497644 2 1064 0 2497645 family 1064 2 1 0 Candidatus Babela 1551504 genus 11 0 1 1053 species 673862 Candidatus Babela massiliensis 1 142 0 95818 phylum 1895827 no rank 1 142 0 2056494 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 1 142 0 phylum 508458 0 1065 9 4 class 649775 Synergistia 0 1 9 1065 order 5 Synergistales 649776 1 0 1061 8 7 1056 0 1 649777 Synergistaceae 7 family 81461 genus 142 1 0 species 81462 Thermanaerovibrio acidaminovorans 0 1 142 1 0 195 2 genus 1 Cloacibacillus 508459 Cloacibacillus porcorum 1197717 species 194 1 0 1 147 0 49894 genus 97477 Acetomicrobium mobile species 1 147 0 336260 genus 1 296 0 species Thermovirga lienii 336261 0 296 1 0 1 269 genus 81466 1 269 0 81468 Aminobacterium colombiense species 0 371 375514 clade 1783270 142182 phylum 1962 8 0 1 0 1962 8 class 4 Gemmatimonadetes 219685 0 1 7 1958 26 order 219686 Gemmatimonadales Gemmatimonadaceae 219687 family 13 1932 6 1 0 8 genus 173479 Gemmatimonas 0 1 3 633 1 352 0 173480 Gemmatimonas aurantiaca species 1 273 0 1379270 Gemmatimonas phototrophica species 1706036 Gemmatirosa 3 genus 2 1286 0 1 species 861299 Gemmatirosa kalamazoonesis 0 1 1283 2 575 0 65842 phylum 575 2 0 204430 class Fibrobacterales 218872 order 1 575 2 1 0 0 1 574 family 204431 0 1 574 genus 832 833 Fibrobacter succinogenes species 1 574 0 456828 phylum 719 1 0 456826 genus 719 1 0 0 719 1 species Candidatus Cloacimonas acidaminovorans 456827 0 372258 360 clade 68336 1090 phylum 21 4376 0 0 1 21 4376 16 class 191410 Chlorobia 20 4360 0 1 191411 Chlorobiales 27 order 19 4333 0 1 191412 Chlorobiaceae 24 family genus 100715 0 501 1 501 1 0 Chloroherpeton thalassium 100716 species no rank 274493 0 8 2183 5 1690 0 1 1091 Chlorobium 38 genus 0 1 473 species 337090 Chlorobium chlorochromatii 254 1 0 Chlorobium limicola 1092 species species 1094 Chlorobium phaeovibrioides 0 1 248 0 1 677 species 1096 Chlorobium phaeobacteroides genus 8 Pelodictyon 1099 1 0 493 3 species 34090 Pelodictyon phaeoclathratiforme 0 1 281 species Pelodictyon luteolum 1100 0 204 1 genus 36 Prosthecochloris 1101 1 0 983 5 725 3 0 2632826 no rank 281093 Prosthecochloris sp. GSB1 species 1 214 0 0 1 233 species 1868325 Prosthecochloris sp. CIB 2401 0 278 1 species Prosthecochloris sp. HL-130-GSB 1974213 species Prosthecochloris aestuarii 1102 0 222 1 256319 Chlorobaculum 36 genus 4 642 0 1 173 1 0 Chlorobaculum tepidum 1097 species 0 1 206 species 274539 Chlorobaculum parvum Chlorobaculum limnaeum 274537 species 227 1 0 phylum 1134404 0 2874 6 Ignavibacteria 795747 class 12 2874 6 1 0 0 1 5 2862 11 order 795748 Ignavibacteriales 1 0 2327 3 family 10 Ignavibacteriaceae 795749 795750 Ignavibacterium 2 genus 2 2317 0 1 Ignavibacterium album 591197 species 2315 1 0 0 1 524 family 1334117 0 524 1 genus 1134403 1134405 Melioribacter roseus species 1 524 0 365008 333 1 0 Bacteroidetes 976 phylum 34 Saprospiria 1937959 class 7 1907 7 1 0 Saprospirales 1936988 order 2 1900 6 1 0 0 1279 2 family 1937961 1279 2 1 0 Haliscomenobacter 2349 genus 11 1 1268 0 2350 Haliscomenobacter hydrossis species 1 family 89374 Saprospiraceae 0 1 3 619 1007 Saprospira 9 genus 2 618 0 1 609 1 0 Saprospira grandis 1008 species 280587 149 1 0 Flavobacteriia 117743 class 123 1 0 280464 148 order 239 Flavobacteriales 200644 21 28800 0 2762318 family Ornithobacterium 28250 genus 3 1199 2 1 0 species 28251 Ornithobacterium rhinotracheale 0 1 1196 genus 86 Elizabethkingia 308865 1 0 9759 6 species 238 Elizabethkingia meningoseptica 0 1 1390 Elizabethkingia genomosp. 3 1756149 species 1450 1 0 1756150 Elizabethkingia genomosp. 4 species 1 1392 0 172045 Elizabethkingia miricola species 1 2031 0 3410 1 0 Elizabethkingia anophelis 1117645 species genus 34084 0 1 2513 34085 Riemerella anatipestifer species 1 2513 0 2782232 no rank 10 14096 0 59732 Chryseobacterium 64 genus 9 13427 0 1 0 569 1 species Chryseobacterium camelliae 1265445 species 1324352 Chryseobacterium gallinarum 0 1 1151 4926 3 0 2593645 no rank 1679 1 0 Chryseobacterium sp. StRB126 878220 species 0 1814 1 species Chryseobacterium sp. T16E-39 2015076 species 1721091 Chryseobacterium sp. IHB B 17019 0 1 1433 0 1 2687 species 253 Chryseobacterium indologenes species Chryseobacterium glaciei 1685010 0 2368 1 Chryseobacterium piperi 558152 species 1662 1 0 genus 2782228 0 1 669 536441 Chryseobacterium taklimakanense species 1 669 0 genus 2 Weeksella 1013 1 0 1233 2 1231 1 0 Weeksella virosa 1014 species 2 family 1853230 Crocinitomicaceae 0 1 3 1747 genus 7 Fluviicola 332102 1 0 1745 2 1738 1 0 Fluviicola taffensis 191579 species 0 4 2669 no rank 313602 2 395 0 1 1940138 Candidatus Walczuchella 2 genus species Candidatus Walczuchella monophlebidarum 1415657 0 393 1 2274 2 1 0 Candidatus Sulcia 336809 genus 7 1 2267 0 336810 Candidatus Sulcia muelleri species 10 family 39782 Blattabacteriaceae 0 1 10 10133 34098 Blattabacterium 74 genus 9 10123 0 1 0 1 1414 species 164514 Blattabacterium punctulatus 7232 6 0 2647581 no rank 1117 1 0 Blattabacterium sp. (Periplaneta americana) 367488 species 1030 1 0 Blattabacterium sp. (Mastotermes darwiniensis) 39768 species Blattabacterium sp. (Blaberus giganteus) 1186051 species 1389 1 0 1 1420 0 1316444 Blattabacterium sp. (Nauphoeta cinerea) species species Blattabacterium sp. (Blattella germanica) 624186 0 1179 1 367806 Blattabacterium sp. (Blatta orientalis) species 1 1097 0 1 1403 0 1653831 Blattabacterium cuenoti species 49546 Flavobacteriaceae 1077 family 105 233934 0 1 genus 1518147 0 1 3813 1 3813 0 1790137 Wenyingzhuangia fucanilytica species genus 178469 0 1 1826 1 1826 0 616991 Arenibacter algicola species 1 0 2328 3 genus 11 Muricauda 111500 516051 Muricauda lutaonensis species 1 865 0 1452 1 0 Muricauda ruestringensis 111501 species 2 4462 0 1 1649495 Seonamhaeicola 1 genus 1 4461 0 2622645 no rank 0 1 4461 species 1936081 Seonamhaeicola sp. S2-3 0 1 5 11046 59 genus 252356 Maribacter 3 9334 0 2615042 no rank 1 3445 0 1644130 Maribacter sp. 1_2014MBL_MicDiv species 1 2486 0 313603 Maribacter sp. HTCC2170 species species 1836467 Maribacter sp. T28 0 1 3403 0 1 1653 species 1178778 Maribacter cobaltidurans 1 genus 417127 Zunongwangia 0 1 2 2979 2978 1 0 Zunongwangia profunda 398743 species 0 1 4 6931 59 genus 326319 Dokdonia 4544 2 0 2615033 no rank species 983548 Dokdonia sp. 4H-3-7-5 0 1 2438 2106 1 0 Dokdonia sp. MED134 313590 species 1 2328 0 326320 Dokdonia donghaensis species 0 1 2846 genus 83612 57029 Psychroflexus torquis species 1 2846 0 2700084 genus 5447 1 0 species 1850246 Lutibacter sp. LPB0138 0 1 5447 0 1 3105 genus 393005 Tamlana sp. UJ94 2069432 species 3105 1 0 0 2491 1 genus 143222 no rank 2633436 0 1 2491 1 2491 0 1729720 Salegentibacter sp. T436 species Aequorivita 153265 genus 1 2374 2 1 0 species 101385 Aequorivita sublithincola 0 1 2373 237 Flavobacterium 59 genus 9 26314 0 1 0 2353 1 species Flavobacterium commune 1306519 3811 1 0 Flavobacterium indicum 312277 species 1763534 Flavobacterium crassostreae species 1 1873 0 species Flavobacterium johnsoniae 986 0 5571 1 Flavobacterium branchiophilum 55197 species 2682 1 0 0 2515 1 species Flavobacterium psychrophilum 96345 0 1 2148 species 1492737 Flavobacterium gilvum 1 5302 0 996 Flavobacterium columnare species 0 1 1408 genus 1176327 2636237 no rank 1 1408 0 species 2094025 Aureitalea sp. RR4-38 0 1 1408 0 1 6 25918 141 genus 52959 Polaribacter 0 1 5851 species 996801 Polaribacter reichenbachii 5712 1 0 Polaribacter vadi 1774273 species no rank 196858 0 14214 3 species Polaribacter sp. ALD11 2058137 0 4410 1 species Polaribacter sp. MED152 313598 0 5054 1 species 1529069 Polaribacter sp. BM10 0 1 4750 5197 2 1 0 Lutibacter 358023 genus 22 species Lutibacter profundi 1622118 0 5175 1 Gramella 292691 genus 38 6707 5 1 0 0 1 1230 species 1486245 Gramella flava species Gramella sp. SH35 2126553 0 1505 1 2245 1 0 Gramella forsetii 411153 species 1913577 Gramella sp. LPB0144 species 1 1689 0 112040 genus 1254 1 0 0 1254 1 species Zobellia galactanivorans 63186 1 0 9520 5 genus 230 Nonlabens 363408 319236 Nonlabens sediminis species 1 2298 0 0 4524 2 no rank 2615035 2053 1 0 Nonlabens sp. MB-3u-79 2058134 species 1476901 Nonlabens sp. MIC269 species 1 2471 0 2468 1 0 Nonlabens dokdonensis 328515 species 455 1 0 252306 genus Robiginitalea biformata 252307 species 455 1 0 Formosa 225842 genus 34 9112 3 1 0 0 2 9078 no rank 2644710 species 1336794 Formosa sp. Hel1_33_131 0 1 3635 1336795 Formosa sp. Hel3_A1_48 species 1 5443 0 1209327 genus 3392 1 0 1803846 Flavivirga eckloniae species 1 3392 0 1 0 16818 5 genus 45 Tenacibaculum 104267 0 1 4501 species 1850252 Tenacibaculum todarodis 0 1 5130 species 584609 Tenacibaculum jejuense 669041 Tenacibaculum dicentrarchi species 1 3512 0 species Tenacibaculum maritimum 107401 0 3630 1 3404 1 0 1204360 genus species 762954 Siansivirga zeaxanthinifaciens 0 1 3404 40 genus 104264 Cellulophaga 0 1 4 12625 1 4450 0 979 Cellulophaga lytica species 0 1 4140 species 76594 Cellulophaga baltica 3995 1 0 Cellulophaga algicola 59600 species 1 0 3340 2 genus 2 Croceibacter 216431 0 1 3338 species 313588 Croceibacter atlanticus 1016 Capnocytophaga 144 genus 15 14218 0 1 28189 Capnocytophaga cynodegmi species 1 1482 0 515 1 0 Capnocytophaga haemolytica 45243 species 2640652 no rank 6 5433 0 Capnocytophaga sp. oral taxon 323 1705617 species 592 1 0 Capnocytophaga sp. H4358 1945658 species 1136 1 0 1316593 Capnocytophaga sp. oral taxon 864 species 1 734 0 0 1 983 species 1316596 Capnocytophaga sp. oral taxon 878 771 1 0 Capnocytophaga sp. ChDC OS43 209053 species 0 1 1217 species 1945657 Capnocytophaga sp. H2931 1 660 0 1017 Capnocytophaga gingivalis species 667 1 0 Capnocytophaga leadbetteri 327575 species Capnocytophaga stomatis 1848904 species 1216 1 0 0 1676 1 species Capnocytophaga sputigena 1019 species Capnocytophaga ochracea 1018 0 586 1 Capnocytophaga canimorsus 28188 species 1839 1 0 154 genus 76831 Myroides 0 1 5 6877 2642485 no rank 3280 2 0 1610 1 0 Myroides sp. ZB35 1458492 species 1 1670 0 1583100 Myroides sp. A21 species species Myroides profundi 480520 0 1708 1 Myroides odoratimimus 76832 species 1735 1 0 genus 3 Olleya 336276 1 0 3891 2 1 3888 0 2615019 no rank 3888 1 0 Olleya sp. Bg11-27 2058135 species no rank 61432 0 3934 2 0 1 3339 species 1150389 Flavobacteriaceae bacterium UJ101 595 1 0 Flavobacteriaceae bacterium 3519-10 531844 species 0 1 1637 genus 389486 1 1637 0 2648869 no rank Sediminicola sp. YIK13 1453352 species 1637 1 0 genus 115 Lacinutrix 291183 1 0 14066 4 2647285 no rank 2 9275 0 0 1 4883 species 983544 Lacinutrix sp. 5H-3-7-4 0 4392 1 species Lacinutrix sp. Bg11-31 2057808 0 4676 1 species Lacinutrix venerupis 1486034 8414 3 1 0 Winogradskyella 286104 genus 46 0 8368 2 no rank 2615021 0 1 3375 species 1936080 Winogradskyella sp. J14-2 Winogradskyella sp. PG-2 754409 species 4993 1 0 Algibacter 261827 genus 2 4708 2 1 0 1 4706 0 1736674 Algibacter alginicilyticus species family 1755828 0 2 1435 1755829 Ichthyobacterium 32 genus 2 1435 0 1 species 242600 Ichthyobacterium seriolicida 0 1 1403 family 1333713 0 1507 2 1507 2 1 0 Owenweeksia 267986 genus 31 species Owenweeksia hongkongensis 253245 0 1476 1 117747 Sphingobacteriia 18 class 24 19349 0 1 0 1 23 19331 51 order 200666 Sphingobacteriales 84566 Sphingobacteriaceae 54 family 22 19280 0 1 2430 4 1 0 Mucilaginibacter 423349 genus 22 2617802 no rank 673 1 0 0 673 1 species Mucilaginibacter sp. PAMC 26640 1300914 0 872 1 species Mucilaginibacter gotjawali 1550579 species Mucilaginibacter sp. BJC16-A31 1234841 0 863 1 no rank 84568 0 1881 1 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1986952 0 1881 1 1459 2 1 0 Solitalea 929509 genus 12 1447 1 0 Solitalea canadensis 995 species 6 6600 0 1 84567 Pedobacter 47 genus species 363852 Pedobacter ginsengisoli 0 1 1605 0 1 1296 no rank 2628915 1296 1 0 Pedobacter sp. PACM 27299 1727164 species 984 Pedobacter heparinus species 1 950 0 1120 1 0 Pedobacter steynii 430522 species 1582 1 0 Pedobacter cryoconitis 188932 species 6 genus 1649482 Pseudopedobacter 0 1 2 1581 1 1575 0 151895 Pseudopedobacter saltans species Sphingobacterium 28453 genus 47 5275 6 1 0 1010 Sphingobacterium mizutaii species 1 916 0 4312 4 0 2609468 no rank 1538644 Sphingobacterium sp. ML3W species 1 1384 0 1 801 0 743722 Sphingobacterium sp. 21 species Sphingobacterium sp. G1-14 2003121 species 1106 1 0 0 1 1021 species 1933220 Sphingobacterium sp. B29 1634 7 1 0 Bacteroidetes Order II. Incertae sedis 1100069 order 25 563843 Rhodothermaceae 8 family 6 1609 0 1 670 1 0 1196022 no rank 1779382 Rhodothermaceae bacterium RA species 1 670 0 2 genus 146918 Salinibacter 0 1 2 427 425 1 0 Salinibacter ruber 146919 species 8 genus 29548 Rhodothermus 0 1 2 504 Rhodothermus marinus 29549 species 496 1 0 45 class 768503 Cytophagia 0 1 60 32508 129 order 768507 Cytophagales 0 1 59 32463 89373 Cytophagaceae 12 family 16 5951 0 1 105 genus 756 1 0 0 1 756 species 106 Runella slithyformis 2 1163 0 1 978 Cytophaga 28 genus 1 1135 0 985 Cytophaga hutchinsonii species 0 1 2 378 4 genus 861914 Fibrella 374 1 0 2620963 no rank 0 1 374 species 1834519 Fibrella sp. ES10-3-2-2 1 0 2372 6 genus 37 Spirosoma 107 species 1178516 Spirosoma montaniterrae 0 1 419 0 485 1 species Spirosoma radiotolerans 1379870 Spirosoma sp. HA7 2057025 species 582 1 0 Spirosoma rigui 564064 species 365 1 0 1211326 Spirosoma aerolatum species 1 484 0 genus 12 Leadbetterella 319458 1 0 797 2 316068 Leadbetterella byssophila species 1 785 0 genus 10 Dyadobacter 120831 1 0 473 2 0 463 1 species Dyadobacter fermentans 94254 2762301 family 2383 2 0 7 genus 869806 Marivirga 0 1 2 2383 Marivirga tractuosa 1006 species 2376 1 0 5 family 200667 Flammeovirgaceae 0 1 4 4828 340671 no rank 2257 1 0 species 1257021 Flammeovirgaceae bacterium 311 0 1 2257 genus 7 Flammeovirga 59739 1 0 2566 2 2559 1 0 2637820 no rank 0 2559 1 species Flammeovirga sp. MY04 1191459 1314 5 1 0 Amoebophilaceae 1501348 family 1 Candidatus Cardinium 273135 genus 4 478 2 1 0 2641185 no rank 1 474 0 species 249402 Cardinium endosymbiont of Encarsia pergandiella 0 1 474 281119 Candidatus Amoebophilus 4 genus 2 835 0 1 281120 Candidatus Amoebophilus asiaticus species 1 831 0 0 1 3 3314 2 family 1937968 Bernardetiaceae 32 genus 1937972 Bernardetia 0 1 2 3312 species Bernardetia litoralis 999 0 3280 1 563798 Cyclobacteriaceae 12 family 10 7511 0 1 246875 Algoriphagus 10 genus 2 1234 0 1 Algoriphagus sp. M8-2 1727163 species 1224 1 0 1 0 2026 2 genus 24 Belliella 232244 Belliella baltica 232259 species 2002 1 0 0 1 3 3462 24 genus 68288 Cyclobacterium species Cyclobacterium marinum 104 0 1652 1 species 320787 Cyclobacterium amurskyense 0 1 1786 Echinicola 390846 genus 4 777 2 1 0 773 1 0 Echinicola vietnamensis 390884 species 16 5812 0 1 1853232 Hymenobacteraceae 28 family 89966 Hymenobacter 32 genus 8 3244 0 1 Hymenobacter sedentarius 1411621 species 470 1 0 5 2289 0 2615202 no rank species 1356852 Hymenobacter sp. APR13 0 1 506 species Hymenobacter sp. DG25A 1385663 0 289 1 0 1 330 species 1385664 Hymenobacter sp. DG25B 0 1 607 species 1484118 Hymenobacter sp. PAMC 26628 species Hymenobacter sp. PAMC 26554 1484116 0 557 1 1446467 Hymenobacter swuensis species 1 453 0 20 genus 323449 Pontibacter 0 1 3 982 390 1 0 Pontibacter akesuensis 388950 species 572 1 0 Pontibacter korlensis 400092 species genus 18 Rufibacter 1379908 1 0 1558 4 no rank 2639626 0 2 921 420 1 0 Rufibacter sp. DG15C 1379909 species Rufibacter sp. DG31D 1379910 species 501 1 0 species 512763 Rufibacter tibetensis 0 1 619 0 2 1221 family 1853234 2 1221 0 1 59740 Persicobacter 5 genus 2664020 no rank 1216 1 0 Persicobacter sp. JZB09 1085624 species 1216 1 0 5893 17 1 0 Chitinophagia 1853228 class 9 5884 16 1 0 Chitinophagales 1853229 order 14 0 1 15 5870 66 family 563835 Chitinophagaceae Niabella 379899 genus 14 1116 3 1 0 0 609 1 species Niabella ginsenosidivorans 1176587 493 1 0 Niabella soli 446683 species 1 0 802 2 genus 6 Arachidicoccus 1769012 no rank 2636138 0 1 796 0 796 1 species Arachidicoccus sp. BS20 1850526 Flavisolibacter 398041 genus 5 1024 2 1 0 1 1019 0 1492898 Flavisolibacter tropicus species 649460 Filimonas 1 genus 2 685 0 1 species 477680 Filimonas lacunae 0 1 684 1 0 1005 2 genus 10 Niastella 354354 species Niastella koreensis 354356 0 995 1 1172 3 1 0 Chitinophaga 79328 genus 2 2029983 Chitinophagaceae bacterium 13 species 1 632 0 species 79329 Chitinophaga pinensis 0 1 538 68 23096 0 1 200643 Bacteroidia 37 class 17905 56 1 0 Bacteroidales 171549 order 94 873 2 0 2005523 family 873 2 1 0 Paludibacter 346096 genus 5 868 1 0 Paludibacter propionicigenes 185300 species 0 5 3338 no rank 333046 genus 909656 0 1501 3 Bacteroides dorei 357276 species 598 1 0 0 499 1 species Bacteroides vulgatus 821 0 404 1 species Bacteroides salanitronis 376805 1 0 1837 2 genus 13 Candidatus Azobacteroides 511434 species 511435 Candidatus Azobacteroides pseudotrichonymphae 0 1 1824 1 0 1227 7 family 2 Tannerellaceae 2005525 3 531 0 1 195950 Tannerella 2 genus species Tannerella forsythia 28112 0 306 1 2620507 no rank 223 1 0 species Tannerella sp. oral taxon HOT-286 712710 0 223 1 0 1 3 694 10 genus 375288 Parabacteroides 1 332 0 2649774 no rank 332 1 0 Parabacteroides sp. CT06 2025876 species 352 1 0 Parabacteroides distasonis 823 species 185291 no rank 1 395 0 1 395 0 1400053 Bacteroidales bacterium CF species 3796 11 1 0 Prevotellaceae 171552 family 11 838 Prevotella 51 genus 10 3785 0 1 0 1 688 no rank 2638335 1 688 0 652716 Prevotella sp. oral taxon 299 species species Prevotella jejuni 1177574 0 386 1 species 839 Prevotella ruminicola 0 1 322 0 1 282 species 52227 Prevotella dentalis species Prevotella denticola 28129 0 169 1 589436 Prevotella fusca species 1 300 0 0 1090 1 species Prevotella intermedia 28131 0 1 173 species 76123 Prevotella enoeca species Prevotella melaninogenica 28132 0 324 1 2005520 Dysgonamonadaceae 1 family 6 1812 0 1 3 genus 1784836 Fermentimonas 0 1 2 1135 1562970 Fermentimonas caenicola species 1 1132 0 2 284 0 1 307628 Petrimonas 2 genus 282 1 0 Petrimonas mucosa 1642646 species genus 294702 0 392 1 0 1 392 species 1642647 Proteiniphilum saccharofermentans 389 1 0 1853231 family genus 283168 0 389 1 389 1 0 Odoribacter splanchnicus 28118 species Rikenellaceae 171550 family 1 547 5 1 0 1 0 306 2 genus 4 Mucinivorans 1611681 0 302 1 species Mucinivorans hirudinis 1433126 genus 1 Alistipes 239759 1 0 240 2 1 239 0 214856 Alistipes finegoldii species 6 family 171551 Porphyromonadaceae 0 1 4 668 Porphyromonas 836 genus 13 662 3 1 0 0 191 1 species Porphyromonas asaccharolytica 28123 1 458 0 837 Porphyromonas gingivalis species 815 Bacteroidaceae 6 family 11 4535 0 1 Bacteroides 816 genus 31 4529 10 1 0 0 1 338 species 290053 Bacteroides helcogenes 256 1 0 Bacteroides heparinolyticus 28113 species species Bacteroides cellulosilyticus 246787 0 537 1 0 1 572 species 28116 Bacteroides ovatus species Bacteroides thetaiotaomicron 818 0 669 1 1 468 0 47678 Bacteroides caccae species 1796613 Bacteroides caecimuris species 1 387 0 1 1012 0 817 Bacteroides fragilis species 259 1 0 Bacteroides zoogleoformans 28119 species 2005519 family 2 231 0 231 2 1 0 Barnesiella 397864 genus 3 228 1 0 Barnesiella viscericola 397865 species 11 5154 0 1 1970189 Marinilabiliales 18 order 1 family 1970190 Salinivirgaceae 0 1 3 946 0 1 2 945 10 genus 1970191 Salinivirga species Salinivirga cyanobacteriivorans 1307839 0 935 1 1471398 Prolixibacteraceae 1 family 3 1074 0 1 7 genus 1471399 Draconibacterium 0 1 2 1073 1 1066 0 1168034 Draconibacterium orientale species 1 family 558415 Marinilabiliaceae 0 1 3 1100 1193324 Alkalitalea 4 genus 2 1099 0 1 Alkalitalea saponilacus 889453 species 1095 1 0 1 2016 0 1573805 family 0 2016 1 genus 2060722 0 2016 1 species Marinifilaceae bacterium SPP2 1717717 27 9959 0 200783 phylum 0 1 27 9959 22 class 187857 Aquificae 8186 21 1 0 Aquificales 32069 order 21 13 3882 0 1 64898 Aquificaceae 8 family 168657 Hydrogenobaculum 120 genus 6 3152 0 1 2622382 no rank 3032 5 0 1 614 0 547143 Hydrogenobaculum sp. 3684 species 0 614 1 species Hydrogenobaculum sp. HO 547144 1 614 0 547145 Hydrogenobaculum sp. SHO species species Hydrogenobaculum sp. SN 547146 0 614 1 1 576 0 380749 Hydrogenobaculum sp. Y04AAS1 species 1 0 141 2 genus 1 Aquifex 2713 species 63363 Aquifex aeolicus 0 1 140 0 235 1 genus 939 0 235 1 species Hydrogenobacter thermophilus 940 3 346 0 1 75905 Thermocrinis 3 genus 0 163 1 species Thermocrinis albus 136094 Thermocrinis ruber 75906 species 180 1 0 Hydrogenothermaceae 224027 family 8 3937 6 1 0 3129 3 1 0 Sulfurihydrogenibium 212790 genus 17 1723 1 0 2619248 no rank 0 1723 1 species Sulfurihydrogenibium sp. YO3AOP1 436114 1 1389 0 309806 Sulfurihydrogenibium azorense species 2 800 0 1 182899 Persephonella 7 genus 0 793 1 species Persephonella marina 309805 90150 no rank 346 1 0 0 346 1 genus 412592 346 1 0 Thermosulfidibacter takaii 412593 species 0 1 5 1751 4 order 1485951 Desulfurobacteriales 1747 4 1 0 Desulfurobacteriaceae 558314 family 8 1 0 1585 2 genus 5 Desulfurobacterium 64159 1580 1 0 Desulfurobacterium thermolithotrophum 64160 species 171868 genus 154 1 0 species Thermovibrio ammonificans 228745 0 154 1 5 2272 0 68297 phylum Dictyoglomia 203486 class 8 2272 5 1 0 4 2264 0 1 203487 Dictyoglomales 7 order 2257 3 0 203488 family genus 2 Dictyoglomus 13 1 0 2257 3 species Dictyoglomus thermophilum 14 0 1180 1 1075 1 0 Dictyoglomus turgidum 513050 species 0 3 287 phylum 2138240 2138243 class 3 287 0 0 1 3 287 2 order 2138246 Coprothermobacterales Coprothermobacteraceae 2138247 family 1 285 2 1 0 0 1 284 genus 68335 species 35786 Coprothermobacter proteolyticus 0 1 284