members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 35579489 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 31 4692 36520 1 0 name 0 superkingdom 43064 0 2157 273 0 1 1783276 57 clade 1801631 1 0 phylum 57 1 2490204 0 genus 57 0 1 1920749 species 57 Candidatus Micrarchaeota archaeon Mia14 53 1783275 0 3897 clade 0 651137 10 1365 phylum no rank 318 651142 3 0 145 genus 1593364 1 0 Candidatus Nitrosopelagicus brevis 0 1 1410606 species 145 0 2 1825023 genus 173 88 species 1 1603555 0 Candidatus Nitrosotenuis cloacae 0 1 1846278 85 species Candidatus Nitrosotenuis sp. AQ6f 3 1643678 0 276 class 256 order 0 1033996 1 family 256 0 1033997 1 256 genus 0 1 497726 Nitrososphaera viennensis 1034015 1 0 species 256 order 20 0 1968909 2 family 20 0 2 1968910 Candidatus Nitrosocaldus genus 20 1 0 498374 2 1 species 19 0 2045011 1 Candidatus Nitrosocaldus islandicus Nitrosopumilales 771 order 2 1 0 4 31932 0 338190 3 769 family 219 genus 1 1993653 0 Candidatus Nitrosomarinus catalina 0 1 1898749 species 219 2 338191 0 550 genus Candidatus Nitrosopumilus adriaticus 0 1580092 1 species 306 Candidatus Nitrosopumilus sediminis species 244 1229909 1 0 42 28889 0 phylum 2482 2482 class 3 42 183924 0 1 Thermoprotei Thermoproteales 729 order 1 1 0 15 2266 1 1 0 2267 8 419 family Thermoproteaceae genus 125 0 2 2270 Thermoproteus tenax 87 species 0 2271 1 0 1 184117 38 species Thermoproteus uzoniensis 36 genus 0 2276 1 Pyrobaculum islandicum 0 2277 1 species 36 genus 148 0 1 3 164450 1 Vulcanisaeta Vulcanisaeta distributa species 81 1 164451 0 Vulcanisaeta moutnovskia species 66 985052 1 0 0 76886 1 genus 109 Caldivirga maquilingensis 0 1 76887 109 species Thermofilaceae 1 0 6 114378 1 family 309 genus 308 1 0 5 2268 1 Thermofilum species 41 0 1550241 1 Thermofilum uzonense 44 species 0 1 2269 Thermofilum pendens Thermofilum carboxyditrophus 0 1 1483572 112 species 0 1 1365176 species 110 Thermofilum adornatus Sulfolobales 1135 order 1 2281 10 0 1 118883 9 0 1134 family genus 152 0 1 2100760 Sulfolobus solfataricus 2287 1 0 species 152 genus 320 0 1 69655 Sulfolobus tokodaii 320 species 0 1 111955 101 genus 1 41980 3 1 0 Metallosphaera species 58 0 1006005 1 Metallosphaera cuprina Metallosphaera sedula species 42 0 43687 1 0 2284 3 426 genus 92 no rank 0 1 2641160 Sulfolobus sp. A20 species 92 0 1891280 1 61 species 0 1 2285 Sulfolobus acidocaldarius Sulfolobus islandicus species 273 0 43080 1 genus 135 0 12914 1 Acidianus hospitalis species 135 0 563177 1 2 871006 0 179 order family 53 0 1 871007 0 1 105850 genus 53 0 1 242703 species 53 Acidilobus saccharovorans 126 family 255472 1 0 126 genus 1 200414 0 Caldisphaera lagunensis 126 species 200415 1 0 436 order 114380 14 0 3 4 2307 1 0 95 family Pyrodictiaceae genus 33 54247 1 0 Hyperthermus butylicus 0 54248 1 33 species 0 1 2308 29 genus 29 species 1 1273541 0 Pyrodictium delaneyi 0 54251 1 30 genus Pyrolobus fumarii 1 54252 0 30 species family 341 1 0 10 2272 1 Desulfurococcaceae 134 genus 1 0 1 2279 3 Staphylothermus 1 2280 0 species 50 Staphylothermus marinus 0 84599 1 species 83 Staphylothermus hellenicus 0 54253 1 genus 27 Thermosphaera aggregans 27 species 0 54254 1 55 genus 2 2273 0 21 species 1 94694 0 Desulfurococcus amylolyticus 0 2275 1 species 34 Desulfurococcus mucosus 1 477695 0 genus 79 Thermogladius calderae 1 1200300 0 79 species genus 45 2 54258 0 Ignicoccus hospitalis 0 160233 1 species 21 Ignicoccus islandicus 1 54259 0 species 24 0 1 51967 phylum 50 0 1 498845 50 genus 50 species 498846 1 0 Candidatus Korarchaeum cryptofilum Euryarchaeota 28890 219 0 1 3 phylum 39110 0 39 2283794 clade 8431 Methanococci 3466 class 3 1 0 183939 15 order 3463 0 14 2182 Methanococcaceae family 2087 0 1 6 2183 1 4 2184 0 genus 1880 Methanococcus voltae 2188 1 0 species 247 2187 1 0 species 265 Methanococcus vannielii Methanococcus maripaludis 1213 species 39152 1 0 0 42879 1 155 species Methanococcus aeolicus genus 206 0 155862 1 Methanothermococcus okinawensis 206 species 155863 1 0 0 8 196117 1376 family 196119 2 1 0 7 genus 335 Methanotorris Methanotorris igneus 328 species 2189 1 0 0 6 196118 1041 genus Methanocaldococcus jannaschii 1 2190 0 146 species 203 species 73913 1 0 Methanocaldococcus vulcanius Methanocaldococcus bathoardescens 0 1301915 1 230 species 200 no rank 0 2641196 1 species 200 1 644281 0 Methanocaldococcus sp. FS406-22 Methanocaldococcus fervens 1 83171 0 species 137 Methanocaldococcus infernus 125 species 0 67760 1 0 24 183925 class 4965 4965 order 3 2158 24 1 0 Methanobacteriales family 126 0 2178 1 126 genus 0 2179 1 Methanothermus fervidus 0 2180 1 species 126 1 2159 22 0 1 4836 family Methanobacteriaceae Methanobacterium 1592 genus 11 0 1 8 2160 species 164 0 59277 1 Methanobacterium subterraneum 0 118062 1 species 233 Methanobacterium congolense Methanobacterium formicicum 0 2162 1 243 species Methanobacterium lacus species 286 1 877455 0 247 species 868131 1 0 Methanobacterium paludis 408 no rank 0 2 2627676 Methanobacterium sp. MZ-A1 0 1 1911685 species 235 Methanobacterium sp. MB1 1379702 1 0 173 species 0 2316 1 395 genus species 395 2317 1 0 Methanosphaera stadtmanae Methanobrevibacter 2399 genus 2 0 1 7 2172 2638681 2 0 no rank 677 Methanobrevibacter sp. AbM4 224719 1 0 species 331 1609968 1 0 species 346 Methanobrevibacter sp. YE315 Methanobrevibacter olleyae species 423 294671 1 0 species 352 83816 1 0 Methanobrevibacter ruminantium species 369 0 1 230361 Methanobrevibacter millerae Methanobrevibacter smithii 576 species 0 1 2173 1 0 5 145260 1 genus 449 Methanothermobacter Methanothermobacter marburgensis 1 145263 0 species 149 no rank 127 1 2631116 0 Methanothermobacter sp. CaT2 species 127 0 866790 1 86 species 0 145262 1 Methanothermobacter thermautotrophicus Methanothermobacter wolfeii 0 1 145261 86 species clade 2847 0 21 2283796 18 1 0 183967 19 2528 class Thermoplasmata 1 0 11 2301 1 order 1310 Thermoplasmatales 0 1919231 1 449 no rank 1054217 1 0 species 449 Thermoplasmatales archaeon BRNA1 190 family 0 1 46630 0 46631 1 190 genus Picrophilus torridus 190 species 82076 1 0 3 46659 0 family 185 2302 3 1 0 2 genus 185 Thermoplasma 50339 1 0 species 98 Thermoplasma volcanium 0 1 2303 85 species Thermoplasma acidophilum Cuniculiplasmataceae 3 1747776 1 0 2 family 112 genus 110 1 0 1747777 2 2 Cuniculiplasma Cuniculiplasma divulgatum 0 1673428 1 108 species 0 90142 2 family 373 373 genus 0 74968 2 species 180 97393 1 0 Ferroplasma acidarmanus species 193 0 1 74969 Ferroplasma acidiphilum no rank 431 1 1234666 0 0 1 1495144 species 431 methanogenic archaeon ISO4-H5 769 order 0 1235850 6 Methanomassiliicoccaceae 1577788 4 0 1 2 family 459 Candidatus Methanoplasma 130 genus 1 1 0 1607807 2 Candidatus Methanoplasma termitum 0 1577791 1 species 129 genus 327 0 1080709 1 1 1406512 0 327 species Candidatus Methanomassiliicoccus intestinalis 2 2517203 0 310 family Candidatus Methanomethylophilus genus 310 1291539 2 0 1 63 Candidatus Methanomethylophilus alvus 0 1291540 1 247 species 1803510 2 0 clade 319 319 genus 379546 2 0 1 2633939 0 no rank 96 Aciduliprofundum sp. MAR08-339 species 96 673860 1 0 Aciduliprofundum boonei species 223 0 1 379547 22293 clade 2290931 110 0 9691 class 77 183963 59 0 1 Halobacteria Natrialbales 2684 order 16 16 1644060 1 0 Natrialbaceae 2668 family 29 15 1644061 1 0 Haloterrigena 485 genus 4 121871 3 0 1 Haloterrigena daqingensis species 174 0 588898 1 307 species 62320 1 0 Haloterrigena turkmenica 209 genus 63742 1 0 209 species 1 13769 0 Natrialba magadii Natronococcus 340 genus 1 29287 2 1 0 Natronococcus occultus 0 29288 1 species 339 1 387342 0 319 genus Halopiger xanaduensis 0 1 387343 species 319 2 0 1 3 88723 477 genus Natrinema Natrinema pellirubrum species 264 69525 1 0 1 2622230 0 211 no rank Natrinema sp. J7-2 406552 1 0 species 211 0 1 1269201 227 genus 2621923 1 0 no rank 227 Salinarchaeum sp. Harcht-Bsk1 1 1333523 0 species 227 genus 144 1 353799 0 Halostagnicola larsenii 144 species 0 1 353800 331 genus 203193 1 0 1 229731 0 species 331 Halobiforma lacisalsi 2256 1 0 genus 107 species 107 0 1 44930 Natronobacterium gregoryi Haloferacales 2634 order 48 1 0 1644055 17 Halorubraceae 1006 family 8 1 0 1963271 8 3 56688 1 0 9 genus 380 Halorubrum species 169 0 1 29284 Halorubrum trapanicum species 202 0 2247 1 Halorubrum lacusprofundi 195 genus 15 1209988 2 1 0 Halopenitus 1048396 1 0 species 180 Halopenitus persicus Salinigranum 3 1 0 2 1644057 423 genus 420 species 0 1 755307 Salinigranum rubrum Haloferacaceae 1644056 7 0 1 6 family 1411 1 293431 0 275 genus Haloquadratum walsbyi 275 species 0 1 293091 129 genus 0 1 60846 Halogeometricum borinquense 129 species 60847 1 0 1001 genus 32 1 0 4 2251 Haloferax 0 1 2246 species 393 Haloferax volcanii Haloferax gibbonsii species 354 35746 1 0 0 2252 1 222 species Haloferax mediterranei no rank 169 1 2678336 0 halophilic archaeon DL31 species 169 1 756883 0 4296 order 96 1 0 2235 25 Halobacteriales family 2882 15 1963268 0 1 29 Haloarculaceae Haloarcula genus 1283 5 2237 0 1 35 1 51589 0 370 species Haloarcula hispanica 166 species 1932004 1 0 Haloarcula taiwanensis Haloarcula marismortui 0 2238 1 species 381 no rank 331 0 1 2624677 species 331 0 1592728 1 Haloarcula sp. CBA1115 1 0 146825 3 2 genus 551 Halorhabdus Halorhabdus tiamatea 194 species 0 1 430914 species 355 1 146826 0 Halorhabdus utahensis Halomicrobium genus 312 0 1 203135 2 1 57705 1 0 species 311 Halomicrobium mukohataei 432 genus 2 63743 0 241 species 0 2257 1 Natronomonas pharaonis Natronomonas moolapensis 191 species 416273 1 0 Halorientalis genus 275 0 1 2 1073987 7 268 no rank 0 1 2648975 Halorientalis sp. IM1011 1932360 1 0 species 268 Halobacteriaceae family 1318 9 2236 1 0 3 63 genus 1656823 1 0 Halanaeroarchaeum sulfurireducens 1 1604004 0 species 63 Halalkalicoccus genus 354 2 332246 0 1 18 336 species 413810 1 0 Halalkalicoccus jeotgali 1980514 1 0 genus 122 Halodesulfurarchaeum formicicum species 122 1873524 1 0 Halobacterium 22 2239 4 0 1 776 genus 1 2242 0 species 205 Halobacterium salinarum Halobacterium hubeiense 247 species 0 1 1407499 1 2668073 0 302 no rank 751944 1 0 302 species Halobacterium sp. DL1 Methanomicrobia 12602 class 11 1 0 51 224756 Methanomicrobiales order 2867 2191 16 0 1 17 family 285 0 1 196137 genus 285 0 2202 1 Methanospirillum hungatei 0 1 2203 285 species 2 88404 0 family 359 genus 359 2192 2 1 0 2 Methanocorpusculum Methanocorpusculum labreanum 1 83984 0 357 species family 765 1198451 6 1 0 4 Methanoregulaceae 257 genus 1 1 0 2 475087 Methanosphaerula 0 1 475088 species 256 Methanosphaerula palustris Methanoregula 3 395331 0 1 1 genus 504 Methanoregula boonei 257 species 358766 1 0 0 882104 1 species 246 Methanoregula formicica 1 6 2194 1 0 1441 family Methanomicrobiaceae 13 45989 4 1 0 1130 genus Methanoculleus 2619537 1 0 388 no rank Methanoculleus sp. MAB1 0 1 86622 species 388 Methanoculleus marisnigri species 259 2198 1 0 470 species 83986 1 0 Methanoculleus bourgensis genus 310 0 1 230355 Methanolacinia petrolearia 310 species 0 54120 1 1 0 570264 5 7 order 672 Methanocellales 4 570265 1 0 1 family 665 Methanocellaceae genus 664 3 570266 0 1 1 Methanocella species 241 1 1175444 0 Methanocella conradii 0 1175445 1 species 422 Methanocella arvoryzae 9052 order 12 94695 29 0 1 Methanosarcinales 143067 3 1 0 1 family 506 Methanosaetaceae genus 505 2 2222 0 2223 1 0 species 237 Methanothrix soehngenii 1 301375 0 species 268 Methanosaeta harundinacea Methanosarcinaceae 8534 family 10 25 2206 1 0 Methanococcoides genus 521 2225 3 1 0 1 232 species 0 1 2226 Methanococcoides methylutens species 288 0 29291 1 Methanococcoides burtonii Methanosarcina 13 13 2207 1 0 6018 genus species 580 0 1 2209 Methanosarcina mazei 2644672 4 0 1821 no rank Methanosarcina sp. MTP4 species 429 1434100 1 0 0 1 1434099 420 species Methanosarcina sp. Kolksee 1434102 1 0 353 species Methanosarcina sp. WH1 Methanosarcina sp. WWM596 0 1434103 1 species 619 Methanosarcina acetivorans species 327 2214 1 0 Methanosarcina thermophila 0 1 2210 314 species 38027 1 0 species 431 Methanosarcina siciliae species 614 0 1 418008 Methanosarcina horonobensis Methanosarcina vacuolata 1 2215 0 410 species 1294 species 1 2208 0 Methanosarcina barkeri Methanosarcina lacustris 0 1 170861 214 species 5 1 0 3 2175 586 genus Methanohalophilus 1 2176 0 species 303 Methanohalophilus mahii 278 species 2177 1 0 Methanohalophilus halophilus 0 1 196136 390 genus Methanosalsum zhilinae species 390 0 1 39669 392 genus 0 101191 1 1 101192 0 392 species Methanomethylovorans hollandica 2321 1 0 313 genus 0 2322 1 species 313 Methanohalobium evestigatum Methanolobus 304 genus 1 2220 2 1 0 0 420950 1 species 303 Methanolobus psychrophilus 7 183980 0 1080 class 0 7 2231 1080 order family 1080 0 2232 7 600 genus 0 2233 4 species 240 0 1316941 1 Archaeoglobus sulfaticallidus species 87 84156 1 0 Archaeoglobus profundus 0 2234 1 151 species Archaeoglobus fulgidus species 122 1 58290 0 Archaeoglobus veneficus 190818 2 0 353 genus Geoglobus acetivorans 0 1 565033 species 168 185 species 113653 1 0 Geoglobus ahangari 0 54260 1 genus 127 Ferroglobus placidus 127 species 54261 1 0 1 0 41 183968 4 class 4456 Thermococci 0 1 40 2258 7 order 4452 Thermococcales 0 1 39 2259 13 family 4445 Thermococcaceae 83867 1 0 genus 130 Palaeococcus pacificus species 130 0 971279 1 783 genus 5 8 2260 1 0 Pyrococcus 2 2629106 0 203 no rank Pyrococcus sp. NA2 species 96 0 1 342949 species 107 0 1 1183377 Pyrococcus sp. ST04 53953 1 0 species 86 Pyrococcus horikoshii Pyrococcus yayanosii 1 1008460 0 species 100 0 29292 1 species 76 Pyrococcus abyssi Pyrococcus kukulkanii 1 1609559 0 57 species 2261 1 0 256 species Pyrococcus furiosus Thermococcus 29 2263 1 0 24 genus 3519 745 no rank 6 2627626 0 Thermococcus sp. AM4 species 246 0 1 246969 species 94 1674923 1 0 Thermococcus sp. 2319x1 Thermococcus sp. P6 49 species 122420 1 0 Thermococcus sp. EXT12c 124 species 2016361 1 0 1 2008440 0 134 species Thermococcus sp. 5-4 species 98 0 1 1042877 Thermococcus sp. 4557 Thermococcus barophilus 0 55802 1 species 182 Thermococcus cleftensis 1 163003 0 158 species 0 1 1505907 105 species Thermococcus eurythermalis Thermococcus onnurineus 0 1 342948 73 species Thermococcus chitonophagus 0 1 54262 species 107 Thermococcus kodakarensis species 111 0 1 311400 0 195522 1 124 species Thermococcus nautili Thermococcus celer species 121 0 2264 1 Thermococcus guaymasensis 0 1 110164 species 106 species 172 0 2265 1 Thermococcus litoralis 0 582419 1 species 219 Thermococcus paralvinellae Thermococcus gorgonarius 120 species 1 71997 0 Thermococcus siculi 1 72803 0 163 species Thermococcus profundus 1 49899 0 species 82 species 130 0 1 53952 Thermococcus peptonophilus Thermococcus pacificus 0 1 71998 44 species Thermococcus piezophilus 94 species 1 1712654 0 Thermococcus barossii 0 1 54077 species 127 Thermococcus sibiricus 172049 1 0 159 species species 143 0 277988 1 Thermococcus thioreducens Thermococcus gammatolerans 86 species 187878 1 0 1 187880 0 species 124 Thermococcus radiotolerans 106 2 4387 0 1 35499905 superkingdom Bacteria 0 40117 13 3352 phylum 1 0 13 203693 6 class 3352 Nitrospira Nitrospirales 24 0 1 189778 12 3346 order Nitrospiraceae family 3322 189779 11 0 1 5 0 179 3 879 genus 304 species group 261385 1 0 1 1660083 0 species 304 Leptospirillum sp. Group II 'CF-1' 1 261386 0 species group 345 Leptospirillum ferriphilum species 345 0 178606 1 0 655606 1 species group 230 Leptospirillum ferrooxidans 0 180 1 species 230 Nitrospira 1 0 1234 5 16 genus 1909 0 1325564 1 species 323 Nitrospira japonica 1715989 1 0 species 316 Candidatus Nitrospira inopinata 0 330214 1 species 433 Nitrospira defluvii 821 species 1 42253 0 Nitrospira moscoviensis 2 28261 1 0 2 genus 529 Thermodesulfovibrio 527 species 0 28262 1 Thermodesulfovibrio yellowstonii phylum 6772 20 57723 0 17 204432 1 0 42 class 6243 Acidobacteriia Solibacterales order 1255 0 1 332160 4 35 Solibacteraceae family 1220 1 0 332161 3 12 1208 genus 12 332162 2 0 1 Candidatus Solibacter species 1196 0 1 332163 Candidatus Solibacter usitatus order 4946 0 1 12 204433 55 Acidobacteriales Acidobacteriaceae family 4891 11 204434 1 0 30 genus 1773 392733 3 1 0 5 Terriglobus 0 1 392734 978 species Terriglobus roseus 790 species 0 1 870903 Terriglobus saanensis 2 33973 1 0 2 genus 930 Acidobacterium Acidobacterium capsulatum 33075 1 0 species 928 Granulicella 3 940557 0 1 5 genus 1449 Granulicella tundricola species 683 940615 1 0 Granulicella mallensis species 761 0 940614 1 Candidatus Koribacter 17 2 658061 0 1 709 genus Candidatus Koribacter versatilis 1 658062 0 692 species Blastocatellia class 529 1 0 1562566 3 2 10 2 458032 1 0 527 genus Chloracidobacterium 0 1 458033 517 species Chloracidobacterium thermophilum 4 68297 0 phylum 987 4 203486 0 class 987 Dictyoglomales 4 203487 0 1 2 order 987 0 203488 3 family 985 genus 985 3 13 1 0 1 Dictyoglomus Dictyoglomus thermophilum species 438 0 1 14 Dictyoglomus turgidum species 546 1 513050 0 23 32066 0 30708 phylum Fusobacteriia 0 1 203490 23 16 class 30708 Fusobacteriales 22 203491 0 1 29 order 30692 Leptotrichiaceae 17 1 0 1129771 10 9529 family 1336 genus 1 32068 0 1336 species 0 1 826 Sebaldella termitidis 0 34104 1 genus 1182 Streptobacillus moniliformis 0 34105 1 1182 species Leptotrichia genus 5553 0 1 5 32067 9 4124 no rank 0 3 2633022 712357 1 0 species 2016 Leptotrichia sp. oral taxon 212 species 1055 1785996 1 0 Leptotrichia sp. oral taxon 847 Leptotrichia sp. oral taxon 498 1053 species 0 1 712368 0 1 40542 species 1420 Leptotrichia buccalis Sneathia 1 0 2 168808 3 genus 1441 0 187101 1 1438 species Sneathia amnii 203492 11 1 0 52 family 21134 Fusobacteriaceae 9 848 1 0 56 genus 19966 Fusobacterium species 1098 1 849 0 Fusobacterium gonidiaformans 0 1 851 6652 species Fusobacterium nucleatum 860 1 0 species 3693 Fusobacterium periodonticum species 1885 0 1583098 1 Fusobacterium hwasookii 1 850 0 1503 species Fusobacterium mortiferum 0 856 1 2634 species Fusobacterium varium 0 1 859 883 species Fusobacterium necrophorum 1562 species 0 861 1 Fusobacterium ulcerans genus 1116 1 167639 0 1116 species 1 167642 0 Ilyobacter polytropus 5 200938 0 1485 phylum class 1485 5 118001 0 1 15 Chrysiogenetes 15 1 0 189769 4 1470 order Chrysiogenales Chrysiogenaceae 189770 3 1 0 14 family 1455 Desulfurispirillum 1441 genus 46 1 0 2 393029 species 1395 0 936456 1 Desulfurispirillum indicum 2281281 phylum 589 0 1 1992 1224 Proteobacteria 0 5 580370 class 1310 0 1 580371 5 14 order 1310 Mariprofundales 4 580372 0 1 9 family 1296 Mariprofundaceae Mariprofundus genus 1287 1 0 377315 3 13 1921086 1 0 species 698 Mariprofundus aestuarium Mariprofundus ferrinatatus 576 species 0 1921087 1 163658 subphylum 0 190 68525 29547 70 0 1 333 class 64086 Epsilonproteobacteria 904 order 0 235899 4 Nautiliaceae 3 224467 1 0 1 family 664 Nautilia 663 genus 23 0 1 2 191291 Nautilia profundicola species 640 244787 1 0 240 family 1 2795691 0 240 genus 0 1 269258 240 no rank 1 2624044 0 Nitratiruptor sp. SB155-2 1 387092 0 species 240 4080 0 1 213849 65 62849 order Campylobacterales 4 2771471 0 family 1322 genus 381 0 286130 1 Sulfuricurvum kujiense 381 species 0 148813 1 941 genus 1 202746 3 0 1 Sulfurimonas 1 202747 0 species 510 Sulfurimonas autotrophica Sulfurimonas denitrificans 430 species 1 39766 0 Campylobacteraceae 6370 1 0 72294 41 52053 family 0 1 194 26 1131 genus 39557 Campylobacter species 960 0 1 201 Campylobacter lari species 516 0 1 1965231 Campylobacter pinnipediorum Campylobacter peloridis 0 488546 1 323 species species 2356 0 199 1 Campylobacter concisus 318 species 0 1 1244531 Campylobacter iguaniorum Campylobacter hyointestinalis 0 1 198 314 species 1 195 0 18737 species Campylobacter coli no rank 1305 2593542 4 0 Campylobacter sp. RM6137 1660073 1 0 species 201 Campylobacter sp. RM12175 0 1660076 1 species 326 1660074 1 0 377 species Campylobacter sp. RM8964 401 species 1500960 1 0 Campylobacter sp. RM16704 Campylobacter ureolyticus 325 species 827 1 0 0 196 1 species 1152 Campylobacter fetus 350 species 0 497724 1 Campylobacter subantarcticus species 360 0 260714 1 Campylobacter insulaenigrae Campylobacter lanienae 1882 species 0 1 75658 Campylobacter avium 0 522485 1 species 265 Campylobacter hominis 0 76517 1 species 407 733 species 1 824 0 Campylobacter gracilis Campylobacter jejuni 1 197 0 species 6056 403 species 0 1 1031542 Campylobacter volucris 230 species 0 200 1 Campylobacter curvus Campylobacter helveticus species 295 0 1 28898 Campylobacter sputorum species 850 1 206 0 289 species 0 374106 1 Campylobacter cuniculorum 0 5 2321108 no rank 3685 2321187 1 0 832 genus Arcobacter sp. LPB0137 species 832 1 1850254 0 genus 1920 1 0 3 28196 9 Arcobacter Arcobacter nitrofigilis 28199 1 0 908 species Arcobacter butzleri species 1003 0 28197 1 no rank 933 2321207 1 0 933 species 944547 1 0 Arcobacter sp. L genus 2441 0 1 57665 9 22 Sulfurospirillum Sulfurospirillum cavolei species 260 0 366522 1 Sulfurospirillum barnesii 255 species 0 44674 1 0 2618290 3 976 no rank Sulfurospirillum sp. UCH001 0 1581011 1 species 445 291 species 0 1986224 1 Sulfurospirillum sp. SL2-1 220622 1 0 240 species Sulfurospirillum sp. JPD-1 species 320 0 66821 1 Sulfurospirillum multivorans 1 65553 0 species 322 Sulfurospirillum deleyianum Sulfurospirillum halorespirans 286 species 0 1 194424 14 72293 0 1 8 family 3783 Helicobacteraceae 12 209 0 1 24 genus 3545 Helicobacter Helicobacter pylori 0 210 1 species 1400 species 258 0 37372 1 Helicobacter bilis species 131 0 1 214 Helicobacter felis species 178 76936 1 0 Helicobacter typhlonius 0 138563 1 320 species Helicobacter cetorum no rank 152 0 1 2593540 1 222136 0 species 152 Helicobacter sp. MIT 01-6242 0 1 32025 species 300 Helicobacter hepaticus 91 species 1 212 0 Helicobacter acinonychis 192 species 0 217 1 Helicobacter mustelae Helicobacter himalayensis 268 species 1 1591088 0 1 213 0 species 231 Helicobacter cinaedi 0 1 843 genus 230 Wolinella succinogenes 230 species 0 1 844 1611 family 0 5 2771472 Nitratifractor 7 0 1 269260 2 693 genus 686 species 0 1 269261 Nitratifractor salsuginis Sulfurovum 8 265570 3 1 0 918 genus 0 1 2646778 514 no rank Sulfurovum sp. NBC37-1 514 species 1 387093 0 species 396 0 206403 1 Sulfurovum lithotrophicum Deltaproteobacteria 120 28221 1 0 268 class 99572 Desulfovibrionales 25 213115 1 0 379 order 29893 Desulfovibrionaceae 198 0 1 194924 18 26513 family Lawsonia 447 genus 4 0 1 41707 2 Lawsonia intracellularis species 443 29546 1 0 genus 972 0 1 2794998 Desulfovibrio salexigens 0 1 880 972 species Desulfovibrio 173 1 0 9 872 19203 genus 184917 1 0 1939 species Desulfovibrio magneticus 0 1 1725232 456 species Candidatus Desulfovibrio trichonymphae Desulfovibrio alaskensis 0 58180 1 1293 species 44742 1 0 2564 species Desulfovibrio fairfieldensis Desulfovibrio piger 3540 species 1 901 0 Desulfovibrio desulfuricans 0 1 876 species 3330 species 4786 1 881 0 Desulfovibrio vulgaris no rank 1122 1 2593640 0 631220 1 0 species 1122 Desulfovibrio sp. G11 1 2582840 0 1224 genus 1224 species 1 873 0 Desulfovibrio africanus Pseudodesulfovibrio 80 4 2035811 0 1 4469 genus Pseudodesulfovibrio indicus 1 1716143 0 1857 species 1 182210 0 1678 species Pseudodesulfovibrio aespoeensis 854 species 57320 1 0 Pseudodesulfovibrio profundus 46 1 0 4 213116 2507 family Desulfomicrobiaceae Desulfomicrobium 2461 genus 16 0 1 3 898 Desulfomicrobium orale 969 species 0 132132 1 Desulfomicrobium baculatum species 1476 899 1 0 0 2 213117 family 494 Desulfohalobium 494 genus 3 1 0 45662 2 Desulfohalobium retbaense species 491 0 1 45663 443 0 1 29 37 34255 order Myxococcales 1898 suborder 224462 3 0 Kofleriaceae 30 1 0 3 224464 1898 family Haliangium genus 1868 1 0 2 162027 28 species 1840 0 80816 1 Haliangium ochraceum 0 7 80812 5186 suborder Polyangiaceae 4322 family 51 0 1 4 49 Sorangium 1 0 39643 2 21 genus 3227 Sorangium cellulosum species 3206 0 56 1 50 1 0 genus 1044 Chondromyces crocatus species 1044 52 1 0 Sandaracinaceae 7 1055686 3 1 0 864 family Sandaracinus 857 genus 4 0 1 2 1055688 Sandaracinus amylolyticus 853 species 927083 1 0 suborder 26728 26 80811 0 0 1 3 1524213 5 family 1095 Vulgatibacteraceae Vulgatibacter genus 1090 2 1524214 1 0 34 1391653 1 0 species 1056 Vulgatibacter incomptus Archangiaceae family 7761 1 0 39 9 152 2292 genus 7 1 0 2 42 Cystobacter Cystobacter fuscus 1 43 0 species 2285 genus 1668 1 0 40 2 16 Stigmatella Stigmatella aurantiaca 1652 species 1 41 0 Melittangium 0 1 2 44 10 genus 1712 Melittangium boletus 83453 1 0 species 1702 8 1 0 2 47 1937 genus Archangium Archangium gephyra 1 48 0 species 1929 41 1 0 5 1524215 4768 family Anaeromyxobacteraceae genus 4727 1 0 161492 4 103 Anaeromyxobacter 2620896 2 0 2380 no rank Anaeromyxobacter sp. K 0 1 447217 1401 species Anaeromyxobacter sp. Fw109-5 species 979 0 1 404589 species 2244 1 161493 0 Anaeromyxobacter dehalogenans family 13104 1 0 31 9 58 Myxococcaceae Corallococcus genus 4251 1 0 83461 3 68 2257 species 184914 1 0 Corallococcus coralloides Myxococcus macrosporus 1926 species 0 35 1 genus 8795 5 32 1 0 365 Myxococcus Myxococcus fulvus 3500 species 0 1 33 species 1566 0 34 1 Myxococcus xanthus Myxococcus stipitatus species 1663 0 1 83455 Myxococcus hansupus 0 1297742 1 1701 species 1 0 213113 4 2 order 864 Desulfurellales family 862 117942 3 0 1 33001 0 genus 501 Desulfurella acetivorans species 501 0 33002 1 Hippea 84404 2 0 1 1 genus 361 species 360 0 84405 1 Hippea maritima 37 1 0 4 453227 1687 order Desulfarculales Desulfarculaceae 1 0 453228 3 24 family 1650 Desulfarculus genus 1626 2 453229 0 1 14 Desulfarculus baarsii species 1612 0 1 453230 Desulfuromonadales order 21353 1 0 69541 24 315 Geobacteraceae 1 0 213422 14 94 family 14466 Geoalkalibacter 2 392332 1 0 7 genus 1242 Geoalkalibacter subterraneus species 1235 0 483547 1 280 1 0 11 28231 13130 genus Geobacter Geobacter uraniireducens 1030 species 351604 1 0 2627627 2 0 no rank 3071 0 1 443144 species 1338 Geobacter sp. M21 0 1 443143 species 1733 Geobacter sp. M18 0 35554 1 species 1223 Geobacter sulfurreducens 897 species 0 1203471 1 Geobacter daltonii Geobacter bemidjiensis 225194 1 0 species 1461 1 313985 0 species 1340 Geobacter lovleyi Geobacter anodireducens species 1390 0 1 1340425 species 1048 345632 1 0 Geobacter pickeringii Geobacter metallireducens species 1390 0 28232 1 Desulfuromonadaceae 6572 family 137 9 213421 0 1 0 1 890 3 13 genus 2427 Desulfuromonas 0 1 2614637 no rank 1226 Desulfuromonas sp. DDH964 species 1226 1 1823759 0 Desulfuromonas soudanensis species 1188 0 1603606 1 Pelobacter 45 0 1 18 5 4008 genus Pelobacter propionicus species 1403 0 29543 1 Pelobacter carbinolicus species 718 19 1 0 no rank 766 0 1 2620299 Pelobacter sp. SFB93 766 species 1842532 1 0 29542 1 0 1076 species Pelobacter acetylenicus 9 1 0 9 213462 2537 order Syntrophobacterales Syntrophaceae 1732 family 2 1 0 5 213468 genus 522 1 2357 0 species 522 0 2358 1 Desulfomonile tiedjei 0 1 60892 genus 606 Desulfobacca acetoxidans 1 60893 0 606 species 602 genus 10 0 1 2 43773 Syntrophus 0 1 316277 species 592 Syntrophus aciditrophicus 796 family 7 3 213465 0 1 Syntrophobacteraceae 789 genus 6 0 1 2 29526 Syntrophobacter 0 119484 1 species 783 Syntrophobacter fumaroxidans Desulfobacterales order 8715 0 1 213118 16 73 20 0 1 213119 8 4664 family Desulfobacteraceae Desulfobacula 1 1 0 2 28222 972 genus species 971 1 28223 0 Desulfobacula toluolica 3 0 1 3 896 2037 genus Desulfococcus Desulfococcus multivorans 1 897 0 764 species 0 1 181663 species 1270 Desulfococcus oleovorans genus 816 0 1 2295 species 816 1 2296 0 Desulfobacterium autotrophicum 1 218207 0 819 genus Desulfatibacillum alkenivorans 819 species 0 259354 1 29 7 213121 0 1 3978 family Desulfobulbaceae Desulfurivibrio 18 0 1 427922 2 1108 genus 1 427923 0 1090 species Desulfurivibrio alkaliphilus genus 623 109168 1 0 Desulfotalea psychrophila 0 84980 1 species 623 Desulfobulbus 2 893 2 0 1 1578 genus Desulfobulbus sp. ORNL 1576 species 1 1986146 0 53318 1 0 640 genus Desulfocapsa sulfexigens 1 65555 0 species 640 Oligoflexia class 3120 1553900 11 0 1 2 1156 order 5 0 1 5 2024979 Bacteriovoracales family 452 1652132 1 0 genus 452 1 1652133 0 Halobacteriovorax marinus 452 species 0 97084 1 Bacteriovoracaceae 0 1 263369 3 1 family 699 genus 698 146784 2 1 0 2 Bacteriovorax 0 1 960 696 species Bacteriovorax stolpii Bdellovibrionales 1962 order 8 1 0 213481 5 Bdellovibrionaceae 0 1 4 213483 1 family 1954 genus 1953 1 0 3 958 13 Bdellovibrio 959 1 0 species 1678 Bdellovibrio bacteriovorus species 262 1 453816 0 Bdellovibrio exovorus Gammaproteobacteria 1246 0 1 1236 879 1573996 class order 31571 0 1 135624 29 211 Aeromonadales 313 84642 28 1 0 31360 family Aeromonadaceae 0 1 129577 2 11 genus 1563 Oceanimonas 1552 no rank 2636315 1 0 Oceanimonas sp. GK1 511062 1 0 species 1552 Zobellella 15 1 0 2 347533 1926 genus Zobellella denitrificans 1911 species 0 347534 1 18 642 1 0 1748 genus 26143 Aeromonas 8141 no rank 8 257493 0 species 847 0 1636606 1 Aeromonas sp. ASNIH1 0 1 1920107 896 species Aeromonas sp. ASNIH7 Aeromonas sp. ASNIH4 1 1636609 0 species 1054 Aeromonas sp. ASNIH2 species 724 1 1636607 0 Aeromonas sp. CA23 0 2033032 1 1200 species 0 2033033 1 1236 species Aeromonas sp. CU5 1134 species 0 1758179 1 Aeromonas sp. ASNIH5 Aeromonas sp. ASNIH3 1050 species 1 1636608 0 Aeromonas rivipollensis 0 1 948519 1080 species 196024 1 0 species 1131 Aeromonas dhakensis Aeromonas schubertii 0 1 652 1097 species Aeromonas media 651 1 0 species 905 Aeromonas caviae 0 1 648 870 species Aeromonas aquatica 1161 species 0 1 558964 Aeromonas veronii 0 654 1 2835 species species 1494 0 645 1 Aeromonas salmonicida species 5681 0 1 644 Aeromonas hydrophila Tolumonas 751 genus 3 2 43947 1 0 748 species 43948 1 0 Tolumonas auensis Oceanisphaera 3 225143 0 1 1 genus 664 Oceanisphaera sp. AMac2203 0 1 1903694 265 species 0 1 1416627 398 species Oceanisphaera profunda 1775403 4 0 1 17 order 425 Nevskiales 401 family 2 2689614 0 4 0 1 2 469322 401 genus Steroidobacter 1 465721 0 species 397 Steroidobacter denitrificans Sinobacteraceae family 7 0 568386 1 1660 no rank 0 33811 2 endosymbiont of unidentified scaly snail isolate Monju 813 species 1 1248727 0 gamma proteobacterium HdN1 species 847 0 1 83406 13 135618 0 1 38 order 4284 Methylococcales Methylococcaceae 53 12 403 0 1 4246 family 2 1 0 762296 2 421 genus Methylovulum 1 1704499 0 419 species Methylovulum psychrotolerans 0 1 416 5 26 genus 2464 Methylomonas Methylomonas methanica 513 species 0 421 1 702114 1 0 673 species Methylomonas koyamae 1 2608980 0 no rank 802 Methylomonas sp. DH-1 802 species 1 1727196 0 Methylomonas denitrificans species 450 1 1538553 0 genus 829 1 0 413 2 3 Methylococcus species 826 0 414 1 Methylococcus capsulatus Methylomicrobium 2 39773 1 0 11 genus 479 271065 1 0 species 468 Methylomicrobium alcaliphilum 14 118884 0 no rank 2992 644 clade 4 32036 0 Calyptogena okutanii thioautotrophic gill symbiont 1 410330 0 species 247 0 1 113267 species 210 Bathymodiolus septemdierum thioautotrophic gill symbiont genus 187 1541743 2 1 0 1 Candidatus Ruthia Candidatus Ruthia magnifica 0 1 386487 species 186 Pseudohongiella 538 genus 1 1524249 2 0 1 537 species 0 1 1249552 Pseudohongiella spirulinae 1 0 2 1608298 7 genus 535 Thiolapillus Thiolapillus brandeum 1 1076588 0 528 species Candidatus Thioglobus 3 655184 1 0 1 genus 302 Candidatus Thioglobus singularis 1 1427364 0 136 species Candidatus Thioglobus autotrophicus 1705394 1 0 species 165 699 genus 3 349742 2 1 0 Sedimenticola Sedimenticola thiotaurini 1 1543721 0 696 species 274 clade 198346 1 0 Candidatus Baumannia cicadellinicola 1 186490 0 species 274 Thiotrichales 9358 order 4 32 72273 0 1 family 590 0 1 4 135617 2 Thiotrichaceae 363 genus 1021 1 0 363 species 288004 1 0 Beggiatoa leptomitoformis 1 0 40751 2 3 genus 225 Thioploca 40754 1 0 species 222 Thioploca ingrica Francisellaceae 4 34064 15 1 0 5743 family 225 genus 3 0 1 1869285 2 Allofrancisella Allofrancisella guangzhouensis 0 1 594679 222 species 12 262 1 0 66 genus 5514 Francisella 2 2610885 0 633 no rank species 346 1 475375 0 Francisella sp. MA067296 Francisella sp. FSC1006 1547445 1 0 287 species 775 species 657445 1 0 Francisella noatunensis species 333 0 573569 1 Francisella sp. TX077308 Francisella hispaniensis species 306 622488 1 0 Francisella halioticida species 224 0 549298 1 Francisella persica 0 1 954 species 197 Francisella sp. TX077310 480 species 0 1 573570 Francisella sp. CA97-1460 1542390 1 0 269 species Francisella tularensis 263 1 0 1284 species Francisella philomiragia 0 1 28110 947 species 25 12 135616 1 0 3021 family Piscirickettsiaceae 2 933 0 genus 386 147268 1 0 168 species Thiomicrospira cyclica 1 92245 0 species 218 Thiomicrospira aerophila 827 genus 34067 3 0 246 species 0 1 1329899 Cycloclasticus zancles 2621467 2 0 581 no rank 348 species 728003 1 0 Cycloclasticus sp. PY97N Cycloclasticus sp. P1 species 233 0 385025 1 2 3 40222 0 1 636 genus Methylophaga 0 754477 1 270 species Methylophaga frappieri Methylophaga nitratireducenticrescens 0 1 754476 species 364 2 1237 0 1 1 genus 609 Piscirickettsia Piscirickettsia salmonis 608 species 1 1238 0 538 genus 0 1 28884 Hydrogenovibrio crunogenus 0 39765 1 538 species 7 31 135625 0 1 192577 order Pasteurellales 192570 family 968 712 30 0 1 Pasteurellaceae Pasteurella 3003 genus 7 0 1 3 745 Pasteurella dagmatis 754 1 0 species 921 Pasteurella multocida species 2075 0 747 1 0 155493 1 genus 667 Gallibacterium anatis 750 1 0 667 species genus 2291 1 0 4 75984 6 Mannheimia 2645054 1 0 508 no rank 1432056 1 0 508 species Mannheimia sp. USDA-ARS-USMARC-1261 Mannheimia haemolytica 960 species 75985 1 0 Mannheimia varigena species 817 0 85404 1 Actinobacillus 0 1 5 713 21 genus 2963 Actinobacillus succinogenes species 507 1 67854 0 874 species 716 1 0 Actinobacillus suis 0 1 715 848 species Actinobacillus pleuropneumoniae 713 species 718 1 0 Actinobacillus equuli Glaesserella genus 1275 2 2094023 0 1 1 Glaesserella parasuis 0 1 738 species 1274 Aggregatibacter 32 1 0 3 416916 5600 genus Aggregatibacter aphrophilus species 4580 0 1 732 Aggregatibacter actinomycetemcomitans 0 714 1 species 988 genus 1689 476528 1 0 47735 1 0 1689 species Bibersteinia trehalosi Haemophilus genus 172543 0 1 724 6 19 0 1 729 146991 species Haemophilus parainfluenzae [Haemophilus] ducreyi 650 species 1 730 0 no rank 5317 0 1 2609962 Haemophilus sp. oral taxon 036 0 712310 1 species 5317 1 249188 0 9243 species Haemophilus pittmaniae Haemophilus influenzae species 10323 727 1 0 Histophilus 2 214906 1 0 1 genus 675 0 1 731 674 species Histophilus somni Basfia 896 genus 2 0 1 697331 2 [Mannheimia] succiniciproducens 157673 1 0 894 species Enterobacterales order 1040683 91347 242 0 1 893 431 family 1903416 2 0 82984 2 1 0 1 genus 431 Pragia 0 82985 1 430 species Pragia fontium Yersiniaceae family 40445 1903411 39 0 1 119 0 1 613 16 1197 genus 27944 Serratia 1 614 0 species 925 Serratia liquefaciens 9972 no rank 2647522 8 0 species 737 0 768493 1 Serratia sp. AS13 Serratia sp. SCBI species 2206 0 1 488142 species 1561 1327989 1 0 Serratia sp. FS14 Serratia sp. AS12 0 768490 1 species 737 Serratia sp. MYb239 0 1 2033438 1324 species 1459 species 1 671990 0 Serratia sp. FGI94 1758196 1 0 1235 species Serratia sp. SSNIH1 Serratia sp. ATCC 39006 1 104623 0 713 species Serratia rubidaea 1 61652 0 1628 species Serratia proteamaculans 0 1 28151 species 763 Serratia plymuthica 0 1 82996 species 2057 7836 species 0 1 615 Serratia marcescens 0 61651 1 species 1597 Serratia ficaria Serratia fonticola 0 1 47917 1969 species Rouxiella 46 genus 1565532 1 0 54 0 1 4 34037 2439 genus Rahnella Rahnella aquatilis 0 34038 1 898 species 2635087 2 0 1487 no rank Rahnella sp. Y9602 species 772 1 741091 0 1 1805933 0 species 715 Rouxiella sp. ERMR1:05 Yersinia 13 629 0 1 217 genus 8005 species group 1630 0 1649845 3 Yersinia pestis 459 species 0 1 632 Yersinia similis species 488 0 367190 1 species 683 1 633 0 Yersinia pseudotuberculosis Yersinia rohdei 1 29485 0 species 297 338 no rank 1 2653513 0 Yersinia sp. FDAARGOS_228 0 1 1839800 338 species 587 species 1 29486 0 Yersinia ruckeri Yersinia frederiksenii species 1285 0 29484 1 Yersinia aldovae 0 29483 1 species 419 Yersinia kristensenii species 463 28152 1 0 0 1 630 1812 species Yersinia enterocolitica 353 species 0 1 631 Yersinia intermedia 604 species 0 263819 1 Yersinia aleksiciae Chania 658 genus 2 2 1745211 1 0 1639108 1 0 species 656 Chania multitudinisentens Gibbsiella genus 1234 1 0 929812 2 1 species 1233 0 1 929813 Gibbsiella quercinecans no rank 975 2 451511 0 1 0 702 2 41 genus 975 Plesiomonas Plesiomonas shigelloides 934 species 703 1 0 Hafniaceae family 10085 1 0 1903412 14 20 0 1 2 82982 16 genus 500 Obesumbacterium 0 1 82983 species 484 Obesumbacterium proteus 460 8 635 1 0 7424 genus Edwardsiella 692 species 1821960 1 0 Edwardsiella anguillarum Edwardsiella tarda 1823 species 1 636 0 Edwardsiella piscicida species 1082 1 1263550 0 1749 no rank 2 2676541 0 species 705 0 1650654 1 Edwardsiella sp. LADL05-105 Edwardsiella sp. EA181011 species 1044 1 1578828 0 1 93378 0 878 species Edwardsiella hoshinae 67780 1 0 species 740 Edwardsiella ictaluri 2141 genus 17 1 0 3 568 Hafnia no rank 492 0 2621980 1 Hafnia sp. CBA7124 1848580 1 0 species 492 Hafnia alvei 569 1 0 species 1632 family 931847 543 115 0 1 1836 Enterobacteriaceae Kosakonia genus 51677 5 1330547 1 0 100 species 2161 0 1 283686 Kosakonia radicincitans 0 1 1158459 3205 species Kosakonia sacchari Kosakonia cowanii 0 1 208223 species 44638 Kosakonia oryzae 497725 1 0 species 1573 genus 12658 1 579 0 0 1 61648 species 12658 Kluyvera intermedia Leclercia 5060 genus 148 83654 4 1 0 1 83655 0 species 1517 Leclercia adecarboxylata no rank 3395 2 2627398 0 1 1920114 0 1819 species Leclercia sp. LSNIH1 1920116 1 0 species 1576 Leclercia sp. LSNIH3 Shimwellia 2 2 1335483 1 0 1115 genus Shimwellia blattae 0 1 563 species 1113 Salmonella genus 12209 1 0 3 590 72 Salmonella bongori 0 54736 1 species 865 Salmonella enterica 11272 species 0 28901 1 50 4 1330545 1 0 11405 genus Lelliottia Lelliottia amnigena species 2334 61646 1 0 1282 species 0 1 1907578 Lelliottia jeotgali species 7739 0 1 69220 Lelliottia nimipressuralis 290677 genus 4625 0 1 22 547 Enterobacter no rank 57159 0 2608935 9 0 1 1827481 4834 species Enterobacter sp. ODB01 4312 species 0 1560339 1 Enterobacter sp. E20 Enterobacter sp. 638 399742 1 0 991 species 1692238 1 0 species 1358 Enterobacter sp. FY-07 Enterobacter sp. HK169 1868135 1 0 4469 species Enterobacter sp. CRENT-193 0 1 2051905 species 21239 Enterobacter sp. R4-368 1 1166130 0 14217 species Enterobacter sp. Crenshaw species 4359 0 1977566 1 species 1380 0 1 1914861 Enterobacter sp. SA187 12 354276 0 species group 228893 0 1 1812935 species 7321 Enterobacter cloacae complex 'Hoffmann cluster IV' 1 299767 0 species 2311 Enterobacter ludwigii 129166 species 0 1 550 Enterobacter cloacae 0 1 69218 species 1676 Enterobacter cancerogenus Enterobacter hormaechei 3 158836 0 1 35126 species 62104 Enterobacter xiangfangensis 0 1296536 1 subspecies 21664 0 1 1812934 5314 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' no rank 10305 0 2757714 3 1 2027919 0 4209 species Enterobacter cloacae complex bacterium Enterobacter cloacae complex sp. ECNIH7 4318 species 1 1915310 0 species 1778 1 2077137 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 Enterobacter kobei species 5128 208224 1 0 10882 species 1 61645 0 Enterobacter asburiae no rank 98908 5 36866 0 1 891974 0 63709 species Plautia stali symbiont Enterobacteriaceae bacterium ENNIH1 0 1 2066051 11128 species species 10352 1920128 1 0 Enterobacteriaceae bacterium ENNIH3 Enterobacteriaceae bacterium strain FGI 57 1 693444 0 1251 species 12468 species 1920109 1 0 Enterobacteriaceae bacterium ENNIH2 739 0 1 14 544 21240 genus Citrobacter 1344959 7 0 11543 species group Citrobacter braakii 1496 species 0 1 57706 Citrobacter freundii complex sp. CFNIH2 species 946 1 2066049 0 0 1 546 species 4871 Citrobacter freundii Citrobacter freundii complex sp. CFNIH3 0 2077147 1 species 1050 0 2077148 1 771 species Citrobacter freundii complex sp. CFNIH4 species 777 0 1 2077149 Citrobacter freundii complex sp. CFNIH9 species 1632 0 67827 1 Citrobacter werkmanii 35703 1 0 species 2907 Citrobacter amalonaticus species 1608 0 545 1 Citrobacter koseri species 1158 1 67824 0 Citrobacter farmeri species 1398 0 67825 1 Citrobacter rodentium no rank 1887 0 2 2644389 Citrobacter sp. CFNIH10 species 1068 1 1920110 0 Citrobacter sp. FDAARGOS_156 819 species 0 1 1702170 1330546 3 0 1 70 genus 4437 Pluralibacter species 1718 1 1334193 0 [Enterobacter] lignolyticus 0 61647 1 species 2649 Pluralibacter gergoviae 401618 1 0 genus 172 172 species 0 1 401619 Candidatus Riesia pediculicola 0 1 561 5 593 genus 88384 Escherichia Escherichia coli 79152 species 0 562 1 1 208962 0 species 4023 Escherichia albertii Escherichia fergusonii species 3100 564 1 0 Escherichia marmotae 0 1 1499973 1516 species 0 191675 16 2004 no rank 84563 16 0 2004 clade 1 199891 0 77 clade 77 species 1835721 1 0 secondary endosymbiont of Trabutina mannipara 0 1 1906660 56 genus Candidatus Mikella endobia 0 1 1778264 56 species genus 164 1682492 1 0 1410383 1 0 164 species Candidatus Tachikawaea gelatinosa 1906659 1 0 84 genus 1 1778263 0 species 84 Candidatus Hoaglandella endobia 1 1906657 0 138 genus Candidatus Doolittlea endobia species 138 0 1778262 1 1 1906661 0 198 genus Candidatus Gullanella endobia 0 1070130 1 species 198 7 84564 0 766 clade genus 766 203804 7 0 1 2 Candidatus Blochmannia 0 203907 1 species 94 Candidatus Blochmannia floridanus Candidatus Blochmannia chromaiodes species 148 1 251542 0 species 216 0 101534 1 Candidatus Blochmannia pennsylvanicus 209 no rank 0 711328 2 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 99 0 1505596 1 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 110 species 1 1505597 0 0 1 251535 species 97 Candidatus Blochmannia vafer 0 146507 3 521 clade secondary endosymbiont of Heteropsylla cubana 122 species 0 134287 1 184 genus 0 1 568987 Candidatus Hamiltonella defensa 138072 1 0 184 species secondary endosymbiont of Ctenarytaina eucalypti 0 1199245 1 species 215 Cronobacter genus 9884 1 0 8 413496 277 Cronobacter turicensis species 1197 0 413502 1 Cronobacter muytjensii species 1382 0 413501 1 0 413503 1 1135 species Cronobacter malonaticus species 1119 0 1 413497 Cronobacter dublinensis 535744 1 0 1189 species Cronobacter universalis 1163710 1 0 957 species Cronobacter condimenti 28141 1 0 species 2628 Cronobacter sakazakii Raoultella 6330 genus 60 160674 3 0 1 Raoultella ornithinolytica 4687 species 0 54291 1 0 1 575 species 1583 Raoultella planticola 141 genus 0 409304 1 Candidatus Ishikawaella capsulata 141 species 1 168169 0 59 genus 0 1048757 1 Candidatus Moranella endobia species 59 1 1048758 0 Cedecea genus 2942 158483 2 1 0 10 158822 1 0 2932 species Cedecea neteri Shigella 821 4 620 0 1 11279 genus Shigella dysenteriae species 4023 1 622 0 3893 no rank 0 2629414 1 0 1813821 1 species 3893 Shigella sp. PAMC 28760 Shigella flexneri 0 1 623 2542 species Klebsiella 1 0 570 10 2323 genus 299430 species 3852 1 1134687 0 Klebsiella michiganensis species 78054 244366 1 0 Klebsiella variicola 85938 species 0 1463165 1 Klebsiella quasipneumoniae 1 2026240 0 species 5729 Klebsiella quasivariicola Klebsiella oxytoca 0 571 1 species 5817 Klebsiella aerogenes species 3647 548 1 0 573 1 0 110971 species Klebsiella pneumoniae 2608929 2 0 no rank 3099 1905288 1 0 1385 species Klebsiella sp. LTGPAF-6F Klebsiella sp. M5al 1934254 1 0 1714 species 42 1 0 1903410 20 16451 family Pectobacteriaceae Brenneria 14 0 1 71655 2 825 genus Brenneria goodwinii 811 species 0 1109412 1 153 1 0 122277 6 6270 genus Pectobacterium 0 1905730 1 species 677 Pectobacterium parmentieri Pectobacterium polaris 0 1 2042057 species 1236 0 1 29471 species 855 Pectobacterium atrosepticum 646 species 0 55208 1 Pectobacterium wasabiae Pectobacterium carotovorum 2703 species 0 1 554 204037 6 0 1 232 genus 7089 Dickeya Dickeya zeae 1 204042 0 1497 species Dickeya solani 2041 species 0 1089444 1 1129 species 1778540 1 0 Dickeya fangzhongdai Dickeya dadantii 1214 species 0 204038 1 Dickeya dianthicola 0 1 204039 976 species 2225 genus 58 84565 5 0 1 Sodalis 1239307 1 0 885 species Sodalis praecaptivus 0 1929246 1 80 species Sodalis endosymbiont of Henestaris halophilus Sodalis glossinidius species 493 0 63612 1 Candidatus Sodalis pierantonius 709 species 1486991 1 0 91 1 0 28 1903409 29533 family Erwiniaceae genus 173 0 1 51228 2 1 Wigglesworthia 51229 1 0 species 172 Wigglesworthia glossinidia Pantoea genus 19359 53335 11 0 1 527 5128 no rank 0 2630326 3 1703 species 1484158 1 0 Pantoea sp. PSNIH1 Pantoea sp. At-9b 1 592316 0 2313 species 1112 species 1484157 1 0 Pantoea sp. PSNIH2 0 1654067 1 species group 2567 Pantoea agglomerans species 2567 0 1 549 0 1 1076550 2121 species Pantoea rwandensis Pantoea ananatis species 1389 0 1 553 Pantoea stewartii 0 66269 1 2883 species 0 1235990 1 167 species Candidatus Pantoea carbekii 1 1891675 0 species 870 Pantoea alhagi Pantoea vagans 0 1 470934 species 3707 Tatumella 544 genus 16 2 82986 1 0 Tatumella citrea species 528 0 1 53336 2 32199 2 1 0 1579 genus Buchnera Buchnera aphidicola 9 1 0 species 1577 genus 2617 0 2 2100764 Pantoea gaviniae 1508 species 0 665914 1 Pantoea calida 1 665913 0 species 1109 240 8 551 0 1 5170 genus Erwinia 182337 1 0 1280 species Erwinia billingiae Erwinia tasmaniensis 834 species 0 1 338565 516 species 1 79967 0 Erwinia pyrifoliae 552 1 0 572 species Erwinia amylovora Erwinia gerundensis 1 1619313 0 species 1115 Candidatus Erwinia sp. ErCipseudotaxifoliae 140 species 0 1 1922217 473 no rank 2622719 1 0 473 species 1 215689 0 Erwinia sp. Ejp617 Morganellaceae 101 1 0 21 1903414 10023 family genus 1420 1 0 4 586 7 Providencia Providencia stuartii 0 1 588 617 species Providencia rettgeri 0 1 587 species 419 Providencia alcalifaciens 377 species 126385 1 0 Xenorhabdus 2772 genus 7 1 0 6 626 40576 1 0 species 920 Xenorhabdus bovienii species 463 0 1 351671 Xenorhabdus doucetiae Xenorhabdus poinarii 40577 1 0 506 species Xenorhabdus nematophila 446 species 1 628 0 351679 1 0 430 species Xenorhabdus hominickii 2028 genus 154 581 2 0 1 Morganella Morganella morganii species 1874 0 582 1 149 583 3 1 0 1646 genus Proteus Proteus vulgaris species 414 0 585 1 Proteus mirabilis species 1083 1 584 0 Photorhabdus 1935 genus 12 4 29487 1 0 Photorhabdus temperata 514 species 1 574560 0 species 557 0 1 291112 Photorhabdus asymbiotica species 852 29488 1 0 Photorhabdus luminescens 0 1 637 genus 121 Arsenophonus symbiont of Lipoptena fortisetosa species 121 634113 1 0 599 0 1 72274 129 123374 order Pseudomonadales 106005 family 685 0 1 86 135621 Pseudomonadaceae Pseudomonas 80 286 1 0 4267 genus 102227 136843 9 0 13628 species group 665 species 0 1 200450 Pseudomonas trivialis 294 1 0 7808 species Pseudomonas fluorescens 1 76761 0 species 565 Pseudomonas veronii 1 200451 0 species 603 Pseudomonas poae Pseudomonas orientalis 0 76758 1 484 species Pseudomonas corrugata 47879 1 0 species 624 0 1 47878 species 977 Pseudomonas azotoformans species 1146 0 1 380021 Pseudomonas protegens 75612 1 0 species 756 Pseudomonas mandelii Pseudomonas silesiensis 0 1 1853130 species 587 no rank 20405 30 196821 0 Pseudomonas sp. FGI182 0 1 1259844 767 species Pseudomonas sp. Os17 1 1500686 0 962 species Pseudomonas sp. DR 5-09 701 species 1534110 1 0 Pseudomonas sp. TKP 684 species 1415630 1 0 species 776 0 1 1028989 Pseudomonas sp. StFLB209 Pseudomonas sp. FDAARGOS_380 species 588 1 2018067 0 1338689 1 0 521 species Pseudomonas sp. JY-Q Pseudomonas sp. MYb193 366 species 1 1827300 0 1155 species 0 1294143 1 Pseudomonas sp. ATCC 13867 species 882 0 1856685 1 Pseudomonas sp. TCU-HL1 species 584 2083052 1 0 Pseudomonas sp. SWI36 Pseudomonas sp. VLB120 0 69328 1 602 species Pseudomonas sp. MRSN12121 0 1 1611770 796 species 0 1207075 1 518 species Pseudomonas sp. UW4 Pseudomonas sp. LG1D9 0 2083054 1 484 species 335 species 1981174 1 0 Pseudomonas sp. M30-35 Pseudomonas sp. NC02 735 species 0 1 2067572 1 2083055 0 species 563 Pseudomonas sp. LH1G9 1283291 1 0 1029 species Pseudomonas sp. URMO17WK12:I11 562 species 1 1931241 0 Pseudomonas sp. S-6-2 Pseudomonas sp. SWI6 559 species 0 2083051 1 Pseudomonas sp. HLS-6 0 1 2049589 519 species Pseudomonas sp. XWY-1 0 1 2069256 628 species Pseudomonas sp. CC6-YY-74 1 1930532 0 species 606 species 1089 1500687 1 0 Pseudomonas sp. St29 0 1898684 1 786 species Pseudomonas sp. LPH1 774 species 1636610 1 0 Pseudomonas sp. PONIH3 species 867 0 1 1649877 Pseudomonas sp. CCOS 191 Pseudomonas sp. SWI44 561 species 0 1 2083053 Pseudomonas sp. GR 6-02 1 1659194 0 406 species 136841 6 0 species group 13982 0 1 43263 species 1286 Pseudomonas alcaligenes 0 1232139 1 1312 species subgroup 0 1149133 1 species 1312 Pseudomonas furukawaii Pseudomonas resinovorans 1 53412 0 1286 species 0 287 1 4244 species Pseudomonas aeruginosa 0 1 53408 species 2540 Pseudomonas citronellolis Pseudomonas mendocina species 3314 1 300 0 644 species 1 1583341 0 Pseudomonas cerasi Pseudomonas koreensis 1127 species 198620 1 0 136846 2 0 6111 species group 74829 1 0 825 species Pseudomonas balearica 0 1 578833 species subgroup 5286 Pseudomonas stutzeri 0 1 316 species 5286 species 573 0 244566 1 Pseudomonas lurida Pseudomonas psychrotolerans 0 237610 1 918 species Pseudomonas parafulva 998 species 0 1 157782 157783 1 0 species 571 Pseudomonas cremoricolorata 65741 1 0 species 1143 Pseudomonas knackmussii 614 species 1788301 1 0 Pseudomonas versuta Pseudomonas alkylphenolica 0 237609 1 species 482 0 216142 1 species 745 Pseudomonas rhizosphaerae 1388 species 0 104087 1 Pseudomonas frederiksbergensis Pseudomonas entomophila 0 1 312306 726 species 0 930166 1 species 1524 Pseudomonas brassicacearum 5059 species group 0 2 136842 296 1 0 1277 species Pseudomonas fragi species 3782 1 587753 0 Pseudomonas chlororaphis Pseudomonas alcaliphila 1017 species 101564 1 0 1 219572 0 477 species Pseudomonas antarctica species group 15327 0 136845 6 Pseudomonas monteilii 0 76759 1 species 2128 Pseudomonas putida 1 303 0 9025 species Pseudomonas oryzihabitans 763 species 0 1 47885 0 70775 1 species 542 Pseudomonas plecoglossicida 1 78327 0 1540 species Pseudomonas mosselii species 1329 0 47880 1 Pseudomonas fulva 8 136849 0 species group 9914 Pseudomonas cichorii 0 1 36746 species 521 Pseudomonas avellanae 610 species 46257 1 0 Pseudomonas syringae group genomosp. 3 species 996 0 1 251701 0 2775504 1 613 no rank 1 1206777 0 613 species Pseudomonas sp. Lz4W 4229 species subgroup 0 1 251695 1 317 0 species 4229 Pseudomonas syringae Pseudomonas viridiflava 753 species 33069 1 0 species subgroup 2192 0 2 251698 Pseudomonas savastanoi 1082 species 29438 1 0 species 1110 0 47877 1 Pseudomonas amygdali 0 1 2 1849530 2 genus 371 Oblitimonas species 369 0 1697053 1 Oblitimonas alkaliphila 2722 subfamily 3 351 0 Azotobacter 2722 genus 11 352 3 1 0 Azotobacter chroococcum species 1713 0 1 353 1 354 0 species 998 Azotobacter vinelandii Moraxellaceae 94 0 1 468 42 16770 family 124 469 25 0 1 12402 genus Acinetobacter species 426 0 1 1148157 Acinetobacter oleivorans 447 species 0 106648 1 Acinetobacter bereziniae 0 1 202950 species 477 Acinetobacter sp. ADP1 477 strain 0 62977 1 Acinetobacter equi 1 1324350 0 440 species Acinetobacter larvae species 343 0 1 1789224 Acinetobacter schindleri 434 species 108981 1 0 species 404 0 1 487316 Acinetobacter soli 1 29430 0 472 species Acinetobacter haemolyticus 1920 no rank 196816 7 0 Acinetobacter sp. TTH0-4 0 1646498 1 species 300 species 327 0 1 1808001 Acinetobacter sp. LoGeW2-3 Acinetobacter sp. TGL-Y2 307 species 1 1407071 0 Acinetobacter sp. ACNIH2 0 1758189 1 211 species 0 2079596 1 197 species Acinetobacter sp. SWBY1 349 species 1636603 1 0 Acinetobacter sp. ACNIH1 Acinetobacter sp. NCu2D-2 1608473 1 0 229 species species 317 1 40214 0 Acinetobacter johnsonii Acinetobacter junii 0 40215 1 679 species Acinetobacter indicus 0 1 756892 species 441 species group 5031 0 5 909768 species 1691 0 1 470 Acinetobacter baumannii Acinetobacter lactucae 266 species 1785128 1 0 0 1 471 species 715 Acinetobacter calcoaceticus 1798 species 1 48296 0 Acinetobacter pittii Acinetobacter nosocomialis 1 106654 0 species 561 Acinetobacter radioresistens 0 40216 1 species 447 Psychrobacter 53 11 497 0 1 2579 genus species 180 45610 1 0 Psychrobacter urativorans Psychrobacter arcticus 327 species 1 334543 0 Psychrobacter alimentarius 0 1 261164 300 species no rank 1537 196806 6 0 0 1699622 1 species 295 Psychrobacter sp. P2G3 Psychrobacter sp. AntiMn-1 0 1720344 1 244 species 1699624 1 0 species 297 Psychrobacter sp. P11G5 1 571800 0 257 species Psychrobacter sp. G Psychrobacter sp. PRwf-1 1 349106 0 species 236 1028416 1 0 species 208 Psychrobacter sp. DAB_AL43B 330922 1 0 species 182 Psychrobacter cryohalolentis Moraxella 475 5 1 0 33 genus 1695 Moraxella ovis 252 species 0 1 29433 34062 1 0 613 species Moraxella osloensis 0 1 386891 species 474 Moraxella bovoculi Moraxella catarrhalis 480 1 0 species 323 Acidiferrobacterales 1474 order 19 6 1692040 0 1 Acidiferrobacteraceae 0 1 1692041 5 26 family 1455 966 genus 8 1744881 2 1 0 Sulfuricaulis species 958 1 1620215 0 Sulfuricaulis limicola 15 1692042 2 1 0 463 genus Sulfurifustis 0 1 1675686 species 448 Sulfurifustis variabilis order 34969 104 135622 1 0 235 Alteromonadales Ferrimonadaceae 1225 family 6 1 0 3 267892 1219 genus 3 2 44011 1 0 Ferrimonas Ferrimonas balearica species 1216 1 44012 0 866 family 2 267894 3 1 0 Psychromonadaceae 864 genus 0 2 67572 no rank 412 0 1 2614957 Psychromonas sp. CNPT3 412 species 314282 1 0 Psychromonas ingrahamii 0 1 357794 species 452 family 2677 1 0 267889 9 4 Colwelliaceae Thalassotalea 339 genus 5 1 0 2 1518149 334 species 0 1763536 1 Thalassotalea crassostreae Colwellia 1 0 6 28228 9 genus 2334 0 28229 1 species 530 Colwellia psychrerythraea Colwellia beringensis 458 species 1967665 1 0 no rank 1337 0 196834 3 439 species 1 1816218 0 Colwellia sp. PAMC 20917 Colwellia sp. PAMC 21821 367 species 0 1 1816219 Colwellia sp. MT41 species 531 58049 1 0 Idiomarinaceae 1080 family 35 1 0 6 267893 Idiomarina 1045 genus 8 0 1 135575 5 Idiomarina loihiensis species 296 0 135577 1 0 2614829 2 no rank 496 1 2055892 0 238 species Idiomarina sp. X4 species 258 0 1 2100422 Idiomarina sp. OT37-5b Idiomarina piscisalsi 0 1 1096243 245 species Moritellaceae 267891 3 0 1 3 family 496 Moritella 58050 2 1 0 6 genus 493 Moritella viscosa 0 80854 1 487 species Shewanellaceae 77 25 267890 0 1 8403 family Shewanella 0 1 22 24 193 genus 8326 Shewanella violacea 443 species 0 1 60217 Shewanella oneidensis 70863 1 0 species 233 Shewanella putrefaciens species 326 1 24 0 Shewanella baltica 626 species 1 62322 0 0 196818 6 1659 no rank Shewanella sp. MR-4 263 species 0 60480 1 0 1 60481 species 201 Shewanella sp. MR-7 Shewanella sp. W3-18-1 283 species 0 1 351745 species 285 0 1 2029986 Shewanella sp. WE21 Shewanella sp. Pdp11 0 1 2059264 species 266 Shewanella sp. ANA-3 species 361 1 94122 0 Shewanella woodyi 60961 1 0 species 335 1 60478 0 species 539 Shewanella amazonensis 404011 1 0 species 325 Shewanella piezotolerans 0 1 93973 399 species Shewanella japonica Shewanella psychrophila 1 225848 0 518 species 325 species 0 70864 1 Shewanella pealeana Shewanella loihica 0 359303 1 species 611 Shewanella marisflavi 350 species 1 260364 0 271 species 56812 1 0 Shewanella frigidimarina 271098 1 0 species 333 Shewanella halifaxensis Shewanella denitrificans 250 species 0 192073 1 0 271097 1 309 species Shewanella sediminis Shewanella bicestrii 0 1 2018305 species 281 family 8637 0 1 267888 25 27 Pseudoalteromonadaceae Pseudoalteromonas 8610 genus 188 24 53246 0 1 species 240 0 1 394751 Pseudoalteromonas arctica Pseudoalteromonas marina 231 species 0 267375 1 0 194690 5 2017 no rank Pseudoalteromonas sp. 1_2015MBL_MicDiv 604 species 1 1720343 0 species 305 1514074 1 0 Pseudoalteromonas sp. NC201 Pseudoalteromonas sp. Bsw20308 283699 1 0 634 species Pseudoalteromonas sp. 13-15 species 260 0 1 1761891 Pseudoalteromonas sp. SM9913 species 214 0 1 234831 Pseudoalteromonas phenolica species 298 1 161398 0 Pseudoalteromonas piscicida species 404 0 43662 1 Pseudoalteromonas piratica 558 species 1348114 1 0 0 43659 1 212 species Pseudoalteromonas tetraodonis Pseudoalteromonas spongiae 1 298657 0 567 species 424 species 247523 1 0 Pseudoalteromonas aliena Pseudoalteromonas agarivorans 251 species 0 176102 1 0 1 166935 301 species Pseudoalteromonas translucida Pseudoalteromonas rubra 1 43658 0 species 437 422 species 1 314281 0 Pseudoalteromonas tunicata Pseudoalteromonas espejiana 1 28107 0 species 268 Pseudoalteromonas issachenkonii 190 species 0 1 152297 0 228 1 291 species Pseudoalteromonas haloplanktis species 547 0 1 288 Pseudoalteromonas atlantica Pseudoalteromonas nigrifaciens 28109 1 0 376 species Pseudoalteromonas luteoviolacea species 388 1 43657 0 11350 family 81 29 72275 0 1 Alteromonadaceae Lacimicrobium 1 0 1751872 2 22 genus 895 Lacimicrobium alkaliphilum 873 species 1 1526571 0 Paraglaciecola 2 1621534 0 1 1 genus 340 Paraglaciecola psychrophila species 339 1 326544 0 0 2 89404 660 genus species 379 0 300231 1 Glaciecola nitratireducens no rank 281 2618684 1 0 Glaciecola sp. 4H-3-7+YE-5 281 species 0 983545 1 101 10 2742 0 1 5969 genus Marinobacter 1 330734 0 species 390 Marinobacter psychrophilus 83889 3 0 no rank 1953 Marinobacter sp. CP1 0 1 1671721 species 629 Marinobacter sp. LQ44 991 species 1749259 1 0 333 species 1 490759 0 Marinobacter sp. BSs20148 species 883 1420917 1 0 Marinobacter salarius Marinobacter hydrocarbonoclasticus 2743 1 0 species 1087 1 1033846 0 species 598 Marinobacter adhaerens Marinobacter salinus 0 1 1874317 505 species 452 species 1 1420916 0 Marinobacter similis 3121 genus 4 10 226 1 0 Alteromonas Alteromonas australica species 288 1 589873 0 Alteromonas naphthalenivorans 1 715451 0 251 species 2614992 3 0 535 no rank Alteromonas sp. MB-3u-76 species 118 2058133 1 0 282 species 0 1777491 1 Alteromonas sp. Mac1 Alteromonas sp. RW2A1 1917158 1 0 species 135 Alteromonas addita 0 1 287094 species 309 Alteromonas mediterranea 557 species 0 314275 1 1 28108 0 species 746 Alteromonas macleodii 1 233316 0 431 species Alteromonas stellipolaris 284 genus 6 2 261825 0 1 Agarivorans 0 680279 1 278 species Agarivorans gilvus Immundisolibacterales order 961 4 1934945 1 0 21 Immundisolibacteraceae 1934946 3 1 0 35 family 940 Immundisolibacter genus 905 1 0 1934947 2 8 species 897 1 1810504 0 Immundisolibacter cernigliae 1 0 4 135615 60 order 250 Cardiobacteriales Cardiobacteriaceae family 190 1 0 868 3 1 Dichelobacter 189 genus 3 2 869 0 1 Dichelobacter nodosus 0 1 870 186 species 47374 order 539 53 135614 1 0 Xanthomonadales 96 0 1 14 1775411 7816 family Rhodanobacteraceae Dyella 1 0 231454 4 59 genus 3470 species 1238 231455 1 0 Dyella japonica Dyella jiangningensis 1 1379159 0 species 910 Dyella thiooxydans 1263 species 0 445710 1 940 genus 7 2 70411 1 0 Frateuria Frateuria aurantia species 933 0 1 81475 11 2 75309 1 0 1005 genus Rhodanobacter species 994 666685 1 0 Rhodanobacter denitrificans Luteibacter 712 genus 5 0 1 242605 2 Luteibacter rhizovicinus species 707 242606 1 0 genus 395 1 2233801 0 species 395 1 2021234 0 Xanthomonadales bacterium D13 15 2 323413 1 0 1198 genus Dokdonella Dokdonella koreensis 1183 species 1 323415 0 0 1 32033 38 367 family 39019 Xanthomonadaceae 338 17 1 0 968 genus 15483 Xanthomonas 1 53413 0 species 426 Xanthomonas axonopodis Xanthomonas euvesicatoria species 718 0 456327 1 643453 2 0 2651 species group 1981 species 0 346 1 Xanthomonas citri species 670 1 366648 0 Xanthomonas fuscans 1 56458 0 species 946 Xanthomonas sacchari 56454 1 0 species 675 Xanthomonas hortorum 0 1 339 species 2015 Xanthomonas campestris 0 56459 1 518 species Xanthomonas vasicola Xanthomonas translucens 1 343 0 species 1428 Xanthomonas vesicatoria 0 1 56460 species 760 Xanthomonas fragariae species 360 0 1 48664 Xanthomonas alfalfae 0 1 366650 749 species 0 442694 1 species 933 Xanthomonas perforans species 544 0 1985254 1 Xanthomonas phaseoli Xanthomonas oryzae 1 347 0 1246 species 0 29447 1 species 546 Xanthomonas albilineans Stenotrophomonas 40323 9 0 1 289 genus 14517 4069 no rank 196198 4 0 1 1793721 0 species 907 Stenotrophomonas sp. KCTC 12332 Stenotrophomonas sp. WZN-1 0 2005046 1 1192 species species 1014 1904944 1 0 Stenotrophomonas sp. LM091 species 956 1827305 1 0 Stenotrophomonas sp. MYb57 Stenotrophomonas nitritireducens species 864 0 1 83617 1006 species 0 1 216778 Stenotrophomonas rhizophila species group 6795 0 1 995085 0 1 40324 species 6795 Stenotrophomonas maltophilia 1494 species 0 128780 1 Stenotrophomonas acidaminiphila Pseudoxanthomonas 2822 genus 45 83618 3 0 1 0 314722 1 1757 species Pseudoxanthomonas suwonensis species 1020 1 415229 0 Pseudoxanthomonas spadix Luteimonas genus 733 1 0 2 83614 9 Luteimonas sp. 100111 2006110 1 0 724 species Lysobacter 68 5 0 1 89 genus 4604 Lysobacter enzymogenes 968 species 0 69 1 Lysobacter gummosus 0 262324 1 species 1109 species 1167 0 1 84531 Lysobacter antibioticus 0 1 435897 species 1271 Lysobacter capsici genus 493 1 2370 0 Xylella fastidiosa 1 2371 0 species 493 1 0 66 135619 356 order 25734 Oceanospirillales Hahellaceae family 602 0 1 3 224379 3 6 1 0 2 158481 599 genus Hahella 593 species 0 1 158327 Hahella chejuensis Oceanospirillaceae 135620 11 0 1 32 family 3450 0 1 4 28253 16 genus 1239 Marinomonas Marinomonas posidonica 450 species 0 1 936476 0 1 119864 297 species Marinomonas mediterranea 476 no rank 196814 1 0 0 400668 1 476 species Marinomonas sp. MWYL1 187492 1 0 407 genus 407 species 0 1 187493 Thalassolituus oleivorans Marinobacterium 3 48075 2 1 0 925 genus species 922 1 1821621 0 Marinobacterium aestuarii Bacterioplanes 4 1 0 1537406 2 402 genus species 398 1249553 1 0 Bacterioplanes sanyensis 0 1 188907 445 genus 1 188908 0 445 species Oleispira antarctica Halomonadaceae 237 0 1 28256 29 15066 family Salinicola 38 1 0 404432 2 954 genus 0 1 1771309 species 916 Salinicola tamaricis Halotalea genus 617 0 1 376488 2 70 species 547 376489 1 0 Halotalea alkalilenta 1985 genus 25 1 0 504090 3 Kushneria species 1037 1 698828 0 Kushneria konosiri 923 species 0 1 157779 Kushneria marisflavi 152 no rank 0 114403 3 74 genus 0 1 1495768 0 1 1495769 species 74 Candidatus Evansia muelleri 60 genus 1 235572 0 Candidatus Portiera aleyrodidarum species 60 0 1 91844 0 1 114185 18 genus Candidatus Carsonella ruddii species 18 0 114186 1 2745 15 0 1 180 genus 9778 Halomonas 1178482 1 0 species 637 Halomonas huangheensis Halomonas chromatireducens 821 species 1 507626 0 4650 no rank 0 8 2609666 Halomonas sp. SF2003 902 species 1 2136172 0 Halomonas sp. GT species 391 0 1 1971364 Halomonas sp. 1513 0 1883416 1 1100 species 0 1610576 1 646 species Halomonas sp. R57-5 Halomonas sp. KO116 1504981 1 0 species 407 Halomonas sp. 'Soap Lake #6' species 424 0 1 1949203 Halomonas sp. 'Soap Lake #7' 1962264 1 0 species 424 species 356 1118153 1 0 Halomonas sp. GFAJ-1 0 213554 1 species 269 Halomonas campaniensis 719 species 1 115561 0 Halomonas hydrothermalis Halomonas beimenensis 1 475662 0 1357 species 0 1 1897729 species 1145 Halomonas aestuarii genus 930 0 1 204286 930 species 28258 1 0 Cobetia marina Chromohalobacter genus 413 2 42054 0 1 5 Chromohalobacter salexigens 0 1 158080 408 species Kangiellaceae 886 family 5 6 1920240 1 0 9 5 261963 0 1 881 genus Kangiella Kangiella profundi 233 species 1 1561924 0 0 261964 1 229 species Kangiella koreensis Kangiella sediminilitoris 1144748 1 0 species 263 914150 1 0 species 147 Kangiella geojedonensis 255527 5 0 1 1 family 958 Saccharospirillaceae 1 0 1 2 1445504 527 genus Gynuella Gynuella sunshinyii 1 1445505 0 species 526 3 1 0 2 230494 430 genus Reinekea species 427 0 1 1336806 Reinekea forsetii 45 9 224372 0 1 4060 family Alcanivoracaceae Alcanivorax genus 3383 59753 6 1 0 44 1094342 1 0 961 species Alcanivorax xenomutans 880 species 285091 1 0 Alcanivorax dieselolei Alcanivorax pacificus 1 1306787 0 species 952 256 species 1 59754 0 Alcanivorax borkumensis 290 no rank 0 1 2638842 0 1 1113728 species 290 Alcanivorax sp. NBRC 101098 genus 632 2025617 2 0 1 2 Ketobacter 630 species 0 1917421 1 Ketobacter alkanivorans 356 family 0 191033 2 Oleiphilus 1 2 141450 1 0 356 genus Oleiphilus messinensis 141451 1 0 species 355 308 49 135613 0 1 18842 order Chromatiales Wenzhouxiangellaceae family 689 1676141 3 1 0 2 Wenzhouxiangella genus 687 1 0 1676142 2 1 0 1579979 1 686 species Wenzhouxiangella marina 0 1738654 2 316 family Woeseia 1738655 2 1 0 1 genus 316 Woeseia oceani species 315 1548547 1 0 Ectothiorhodospiraceae 8423 family 106 17 72276 0 1 898 genus 22 1 0 1335745 3 Spiribacter Spiribacter salinus 284 species 0 1335746 1 Spiribacter curvatus 1335757 1 0 species 592 Alkalilimnicola 1 0 133193 2 28 genus 967 Alkalilimnicola ehrlichii 0 351052 1 939 species 367 genus 1 0 1 1765964 2 Acidihalobacter 0 160660 1 366 species Acidihalobacter prosperus Thioalkalivibrio 70 0 1 6 106633 4060 genus Thioalkalivibrio sulfidiphilus 1 1033854 0 1462 species species 889 0 106634 1 Thioalkalivibrio versutus Thioalkalivibrio nitratireducens 470 species 1 186931 0 1 2621013 0 no rank 631 species 631 0 1 396595 Thioalkalivibrio sp. K90mix Thioalkalivibrio paradoxus 108010 1 0 538 species Ectothiorhodospira 1020 genus 3 0 1 1051 2 2684909 1 0 1017 no rank 0 1 1442136 species 1017 Ectothiorhodospira sp. BSL-9 1005 genus 0 1 85108 Halorhodospira halophila species 1005 0 1 1053 6660 family 86 0 1 1046 18 Chromatiaceae 0 1 82569 799 no rank species 799 1 1978339 0 Chromatiaceae bacterium 2141T.STBD.0c.01a Thiocystis 13724 2 0 1 27 genus 745 718 species 0 1 73141 Thiocystis violascens Allochromatium genus 1142 1 0 85072 2 9 Allochromatium vinosum species 1133 0 1049 1 1482 genus 12 1 0 2 53392 Thiodictyon Candidatus Thiodictyon syntrophicum species 1470 0 1166950 1 Thioflavicoccus 13 1 0 2 156885 517 genus 80679 1 0 504 species Thioflavicoccus mobilis Nitrosococcus 13 1227 4 0 1 787 genus 133539 1 0 268 species Nitrosococcus halophilus 0 473531 1 263 species Nitrosococcus watsonii Nitrosococcus oceani 1 1229 0 species 243 Marichromatium 988 genus 34 1 0 85076 2 Marichromatium purpuratum 0 37487 1 species 954 Candidatus Nitrosoglobus 7 1980513 2 1 0 114 genus 0 1630141 1 species 107 Candidatus Nitrosoglobus terrae 3 449719 2 0 1 689 family Granulosicoccaceae genus 686 1 437504 0 Granulosicoccus antarcticus 437505 1 0 species 686 997 no rank 0 451214 2 Thiohalobacter 23 1273155 2 1 0 997 genus 974 species 585455 1 0 Thiohalobacter thiocyanaticus Halothiobacillaceae 760 family 12 4 255526 0 1 0 1 109262 3 30 genus 748 Halothiobacillus Halothiobacillus neapolitanus species 294 1 927 0 0 2636392 1 no rank 424 Halothiobacillus sp. LS2 1860122 1 0 424 species 0 4 1240482 order 1040 Orbaceae 1 0 4 1240483 6 family 1040 genus 510 1 1335631 0 Frischella perrara 0 1 1267021 510 species 524 genus 1 2 1193503 0 1 Gilliamella Gilliamella apicola species 523 0 1 1196095 Legionellales 1 1 0 118969 20 5987 order 1 0 15 444 7 family 4875 Legionellaceae Tatlockia 198 genus 1 2 465 1 0 197 species 0 1 451 Tatlockia micdadei genus 4670 445 12 1 0 8 Legionella Legionella lansingensis species 262 0 45067 1 species 396 0 1 449 Legionella hackeliae Legionella clemsonensis 1867846 1 0 species 291 Legionella sainthelensi 0 28087 1 296 species 312 species 96230 1 0 Legionella fallonii Legionella waltersii 66969 1 0 species 347 450 1 0 566 species Legionella longbeachae 1489 species 0 446 1 Legionella pneumophila Legionella oakridgensis species 267 0 29423 1 Legionella spiritensis 328 species 0 452 1 Legionella endosymbiont of Polyplax serrata 108 species 0 2005262 1 2 118968 4 1 0 1111 family Coxiellaceae genus 949 0 776 2 species 862 1 777 0 Coxiella burnetii 1 2676648 0 87 no rank Coxiella endosymbiont of Amblyomma americanum 87 species 0 325775 1 160 no rank 1 134284 0 160 species 1 1592897 0 Coxiella-like endosymbiont 22286 order 16 135623 44 0 1 Vibrionales Vibrionaceae family 22270 641 43 0 1 123 Grimontia 9 1 0 246861 2 478 genus 673 1 0 species 469 Grimontia hollisae genus 1341 1 0 511678 4 40 Aliivibrio Aliivibrio salmonicida 40269 1 0 399 species Aliivibrio fischeri 500 species 1 668 0 0 80852 1 species 402 Aliivibrio wodanis 0 1 662 30 404 genus 17879 Vibrio species 576 28173 1 0 Vibrio nigripulchritudo no rank 677 2614977 2 0 2014742 1 0 species 308 Vibrio sp. 2521-89 1 1116375 0 369 species Vibrio sp. EJY3 Vibrio scophthalmi 1 45658 0 species 447 species 792 55601 1 0 Vibrio anguillarum Vibrio fluvialis 1 676 0 species 1068 Vibrio coralliilyticus species 987 0 1 190893 1891919 1 0 387 species group species 387 29498 1 0 Vibrio tubiashii Vibrio vulnificus species 1261 0 1 672 Vibrio hyugaensis 0 1 1534743 341 species 1 212663 0 331 species Vibrio tasmaniensis 1 553239 0 475 species Vibrio breoganii species 685 29494 1 0 Vibrio furnissii 0 666 1 682 species Vibrio cholerae Vibrio gazogenes 0 1 687 557 species Vibrio tritonius 1435069 1 0 species 547 species 738 0 674 1 Vibrio mimicus 435 species 1 52443 0 Vibrio tapetis 717610 10 0 species group 6106 669 1 0 667 species Vibrio harveyi 696485 1 0 species 641 Vibrio owensii Vibrio campbellii 0 680 1 species 789 species 1247 0 1 663 Vibrio alginolyticus 2 2315253 0 722 species subgroup Vibrio antiquarius 150340 1 0 species 251 Vibrio diabolicus 0 50719 1 471 species Vibrio natriegens species 695 1 691 0 Vibrio jasicida species 299 766224 1 0 Vibrio parahaemolyticus 0 670 1 800 species Vibrio rotiferianus 190895 1 0 246 species Vibrio qinghaiensis 1 2025808 0 species 383 Paraphotobacterium genus 280 2042066 2 1 0 1 0 1 1755811 species 279 Paraphotobacterium marinum Photobacterium 24 1 0 657 4 2169 genus Photobacterium gaetbulicola 0 1295392 1 816 species species 617 74109 1 0 Photobacterium profundum 38293 1 0 712 species Photobacterium damselae 40 28 1706369 1 0 6909 order Cellvibrionales Microbulbiferaceae 1706373 5 1 0 7 family 1766 genus 1759 1 0 4 48073 23 Microbulbifer Microbulbifer thermotolerans 547 species 0 252514 1 Microbulbifer aggregans 0 1 1769779 species 611 Microbulbifer agarilyticus 1 260552 0 578 species family 838 1 0 1706372 4 6 Halieaceae 1 0 3 1217416 13 genus 832 Halioglobus Halioglobus pacificus 0 930806 1 species 434 Halioglobus japonicus 0 930805 1 species 385 Cellvibrionaceae 0 1 1706371 11 26 family 3378 genus 386 2425 1 0 Teredinibacter turnerae 2426 1 0 species 386 genus 498 0 1 2036021 2 1 Agarilytica 497 species 1737490 1 0 Agarilytica rhodophyticola genus 1673 1 0 10 4 43 Cellvibrio 0 155077 1 474 species Cellvibrio japonicus no rank 1156 0 2 2624793 Cellvibrio sp. PSBB023 species 367 1 1945512 0 Cellvibrio sp. PSBB006 species 789 1987723 1 0 genus 385 1 316625 0 Saccharophagus degradans 86304 1 0 species 385 genus 410 447467 2 0 1 5 Simiduia 405 species 0 447471 1 Simiduia agarivorans Spongiibacteraceae family 887 7 1706375 1 0 19 1 0 630749 2 2 genus 292 Spongiibacter 2631504 1 0 290 no rank 0 1620392 1 290 species Spongiibacter sp. IMCC21906 0 1 1434050 2 2 genus 250 Zhongshania 1470434 1 0 species 248 Zhongshania aliphaticivorans Oceanicoccus 5 1 0 1084558 2 326 genus Oceanicoccus sagamiensis species 321 716816 1 0 Alphaproteobacteria 553 28211 1 0 1107 class 287022 304 0 1 90 204455 52503 order Rhodobacterales 52199 family 980 31989 89 0 1 Rhodobacteraceae 0 1 2 58842 2 genus 1320 Sagittula 0 2624628 1 no rank 1318 species 1318 1 2009329 0 Sagittula sp. P11 1 245186 0 2 genus Loktanella genus 1086 1 0 3 2433 2 Roseobacter Roseobacter litoralis 0 42443 1 463 species species 621 0 2434 1 Roseobacter denitrificans Ketogulonicigenium 52 1 0 3 92944 1113 genus Ketogulonicigenium robustum species 549 92947 1 0 species 512 0 1 92945 Ketogulonicigenium vulgare 0 1 119541 genus 373 0 1 441209 species 373 Rhodobaca barguzinensis 58 5 302485 1 0 5132 genus Phaeobacter Phaeobacter porticola 0 1 1844006 411 species 221822 1 0 1588 species Phaeobacter inhibens 0 1 60890 species 1588 Phaeobacter gallaeciensis Phaeobacter piscinae 1 1580596 0 1487 species Rhodovulum 2510 genus 45 34008 4 0 1 Rhodovulum sulfidophilum species 1160 0 1 35806 0 2631432 2 1305 no rank 0 1564506 1 species 615 Rhodovulum sp. P5 Rhodovulum sp. MB263 690 species 308754 1 0 1524 genus 7 1 0 60136 3 Sulfitobacter 1 196795 0 689 no rank 689 species 1917485 1 0 Sulfitobacter sp. AM1-D1 Sulfitobacter pseudonitzschiae 0 1402135 1 species 828 3 191028 2 0 1 840 genus Leisingera Leisingera methylohalidivorans 0 133924 1 837 species 557 genus 1 1649279 0 0 1 379347 species 557 Ruegeria mobilis Halocynthiibacter 1 1579315 2 1 0 379 genus Halocynthiibacter arcticus 1579316 1 0 378 species genus 1020 1097466 2 1 0 1 Defluviimonas 1335048 1 0 species 1019 Defluviimonas alba 7 0 1 285107 2 514 genus Thioclava Thioclava nitratireducens 507 species 0 1 1915078 Thalassococcus 1 436357 0 genus 4 genus 459 1 1759396 0 1 2622455 0 459 no rank Marivivens sp. JLT3646 species 459 0 1 1920883 829 genus 6 2 1609958 1 0 Confluentimicrobium 0 2643318 1 823 no rank Confluentimicrobium sp. EMB200-NS6 0 1 1609966 species 823 Antarctobacter genus 918 1 0 2 74032 2 74033 1 0 916 species Antarctobacter heliothermus 2586 genus 16 875170 5 1 0 Celeribacter 1 1208324 0 907 species Celeribacter indicus Celeribacter marinus 0 1 1397108 315 species Celeribacter manganoxidans 833 species 0 1411902 1 0 1758178 1 species 515 Celeribacter ethanolicus Paracoccus genus 8494 1 0 9 265 123 species 835 1 1945662 0 Paracoccus contaminans Paracoccus aminophilus 0 1 34003 792 species Paracoccus denitrificans species 1508 0 1 266 1 147645 0 species 1490 Paracoccus yeei 726 no rank 0 246570 1 Paracoccus sp. BM15 0 1 1529068 726 species species 1228 0 34004 1 Paracoccus aminovorans Paracoccus sp. CBA4604 0 1 2065379 864 species Paracoccus zhejiangensis 1077935 1 0 species 928 Tateyamaria 1 1 0 2 299261 510 genus Tateyamaria omphalii species 509 1 299262 0 Pelagibaca 0 1 2 360528 7 genus 968 species 961 1250539 1 0 Pelagibaca abyssi Planktomarina genus 294 1 0 1284657 2 1 Planktomarina temperata 0 1284658 1 293 species genus 566 1 159345 0 Roseibacterium elongatum 1 159346 0 species 566 Rhodobacter genus 4560 1060 5 0 1 63 Rhodobacter capsulatus 1061 1 0 837 species no rank 1199 2 196779 0 Rhodobacter sp. CZR27 species 585 0 2033869 1 0 1850250 1 species 614 Rhodobacter sp. LPB0142 Rhodobacter sphaeroides species 2461 0 1 1063 genus 2345 263377 2 0 2640570 1 0 1165 no rank 1 1792508 0 1165 species Yangia sp. CCB-MM3 Thiobacimonas profunda 1 1229727 0 1180 species 0 58840 2 no rank 1375 Rhodobacteraceae bacterium QY30 0 2033435 1 799 species Rhodobacteraceae bacterium 576 species 0 1 1904441 Marinovum 367771 2 0 1 67 genus 1037 Marinovum algicola species 970 0 42444 1 0 1 2 188905 9 genus 507 Jannaschia 0 2645469 1 498 no rank species 498 0 1 290400 Jannaschia sp. CCS1 1677 genus 9 3 97050 1 0 Ruegeria 0 1 2625375 568 no rank Ruegeria sp. TM1040 0 1 292414 568 species 0 1 89184 species 1100 Ruegeria pomeroyi 0 1 2211641 genus 699 245188 1 0 species 699 Loktanella vestfoldensis 75 4 478070 1 0 2790 genus Labrenzia species 935 1 187304 0 Labrenzia aggregata 2648686 2 0 1780 no rank species 886 1674922 1 0 Labrenzia sp. CP4 1 2021862 0 species 894 Labrenzia sp. VG12 756 genus 0 74030 1 Roseovarius mucosus species 756 1 215743 0 Octadecabacter genus 1163 4 53945 0 1 2 1458307 1 0 357 species Octadecabacter temperatus Octadecabacter antarcticus 297 species 0 1217908 1 Octadecabacter arcticus species 507 0 53946 1 Pannonibacter 1701 genus 16 1 0 2 227873 Pannonibacter phragmitetus 1685 species 121719 1 0 Dinoroseobacter 611 genus 1 0 1 2 309512 Dinoroseobacter shibae 215813 1 0 610 species 7 82117 0 no rank 2991 Micavibrio 10 0 1 2 213485 741 genus Micavibrio aeruginosavorus 1 349221 0 731 species 910 genus 34 2 991903 1 0 Polymorphum 991904 1 0 species 876 Polymorphum gilvum 64 1 0 2 1632780 1016 genus Phreatobacter Phreatobacter sp. S-12 952 species 0 1 1868589 1 62654 0 324 clade genus 324 1 767891 0 0 767892 1 324 species Candidatus Puniceispirillum marinum 462 order 1 3 1191478 0 1 Magnetococcales Magnetococcaceae 1 0 2 1191479 7 family 461 1 162171 0 454 genus species 454 1124597 1 0 Magnetococcus marinus order 1047 6 54526 0 0 2045213 1 genus 181 Candidatus Fonsibacter ubiquis 181 species 0 1925548 1 866 family 2 1655514 5 0 1 Pelagibacteraceae 0 2 1655516 404 no rank alpha proteobacterium HIMB59 150 species 744985 1 0 254 species 0 859653 1 alpha proteobacterium HIMB5 2 198251 0 genus 460 no rank 219 1 2647897 0 Candidatus Pelagibacter sp. IMCC9063 1002672 1 0 species 219 1 198252 0 241 species Candidatus Pelagibacter ubique 190 order 5 4 255473 0 1 Parvularculales Parvularculaceae 5 1 0 255474 3 185 family 0 1 2 208215 15 genus 180 Parvularcula Parvularcula bermudensis 0 1 208216 species 165 5 2800060 0 order 1047 Hyphomonadaceae 1047 family 19 5 69657 1 0 genus 325 2723 1 0 Hirschia baltica 1 2724 0 species 325 703 genus 3 85 3 0 1 Hyphomonas no rank 279 1 2630699 0 Hyphomonas sp. Mor2 0 1906738 1 species 279 species 421 0 1 81032 Hyphomonas neptunium Caulobacterales 69 1 0 20 204458 13772 order 13703 family 180 19 76892 1 0 Caulobacteraceae Caulobacter genus 6837 0 1 6 75 78 Caulobacter vibrioides 0 155892 1 species 2055 species 814 0 69395 1 Caulobacter henricii Caulobacter segnis 88688 1 0 975 species 1862 no rank 0 1 2648921 Caulobacter sp. K31 366602 1 0 1862 species Caulobacter mirabilis species 1053 1 69666 0 Asticcacaulis 941 genus 24 0 1 76890 2 Asticcacaulis excentricus species 917 78587 1 0 317 no rank 1 81440 0 Caulobacteraceae bacterium OTSz_A_272 species 317 0 1759059 1 genus 1151 2 20 1 0 4 Phenylobacterium 284016 1 0 1147 species Phenylobacterium zucineum 41275 7 0 1 101 genus 4277 Brevundimonas Brevundimonas vesicularis 0 41276 1 556 species 1 74313 0 species 795 Brevundimonas subvibrioides Brevundimonas naejangsanensis 819 species 0 1 588932 no rank 2006 2622653 3 0 Brevundimonas sp. GW460-12-10-14-LB2 species 702 0 1827469 1 Brevundimonas sp. DS20 species 666 1 1532555 0 Brevundimonas sp. LM2 638 species 1938605 1 0 Rhizobiales order 120207 0 1 208 356 1265 1 0 5 45404 3 family 781 Beijerinckiaceae Methylocella 425 genus 4 2 120652 1 0 Methylocella silvestris 421 species 0 199596 1 genus 353 1 0 2 532 1 Beijerinckia Beijerinckia indica 352 species 0 533 1 77 19 69277 0 1 11879 family Phyllobacteriaceae Phyllobacterium 28100 2 0 1 1 genus 523 Phyllobacterium zundukense 1867719 1 0 522 species 805 genus 18 449972 2 0 1 Chelativorans no rank 787 1 2643807 0 Chelativorans sp. BNC1 species 787 0 1 266779 genus 639 1 274591 0 639 no rank 0 1 2614931 Hoeflea sp. IMCC20628 species 639 0 1620421 1 Aminobacter 8 31988 2 0 1 1054 genus Aminobacter aminovorans 1046 species 0 83263 1 Nitratireductor genus 496 245876 2 0 1 36 Nitratireductor basaltis 1 472175 0 species 460 8285 genus 301 0 1 9 68287 Mesorhizobium species 1063 0 593909 1 Mesorhizobium opportunistum 1 325217 0 1007 no rank 1007 species 0 278153 1 Mesorhizobium sp. WSM1497 Mesorhizobium loti 1018 species 1 381 0 Mesorhizobium amorphae 0 71433 1 1105 species Mesorhizobium sp. B7 1670800 1 0 730 species species 794 0 1 536018 Mesorhizobium australicum 39645 1 0 species 1272 Mesorhizobium ciceri Mesorhizobium japonicum 0 2066070 1 995 species Aurantimonadaceae 1 0 7 255475 18 family 3692 38 293088 4 1 0 2848 genus Martelella 0 1 2629616 914 no rank 914 species 1 686597 0 Martelella sp. AD-3 Martelella mediterranea 918 species 0 293089 1 0 1 1486262 species 978 Martelella endophytica Aureimonas 0 1 2 414371 25 genus 826 no rank 801 0 2615206 1 0 1 1349819 801 species Aureimonas sp. AU20 Chelatococcaceae 10 0 1 2036754 4 1874 family Chelatococcus 1864 genus 64 0 1 28209 3 species 719 444444 1 0 Chelatococcus daeguensis 0 2638111 1 1081 no rank 1 1702325 0 1081 species Chelatococcus sp. CO-6 21663 family 292 26 41294 0 1 Bradyrhizobiaceae Bradyrhizobium 1 0 374 11 255 genus 11170 no rank 6193 0 6 2631580 species 1029 1 115808 0 Bradyrhizobium sp. ORS 285 Bradyrhizobium sp. CCGE-LA001 970 species 1 1223566 0 Bradyrhizobium sp. BTAi1 288000 1 0 species 976 Bradyrhizobium sp. species 1004 376 1 0 1 2057741 0 species 1188 Bradyrhizobium sp. SK17 Bradyrhizobium sp. ORS 278 1 114615 0 1026 species Bradyrhizobium icense 0 1 1274631 572 species 0 1 44255 species 987 Bradyrhizobium oligotrophicum Bradyrhizobium diazoefficiens 0 1355477 1 species 1737 Bradyrhizobium japonicum species 1426 0 375 1 Rhodopseudomonas 4978 genus 86 1 0 2 1073 Rhodopseudomonas palustris species 4892 0 1076 1 Oligotropha 509 genus 7 2 40136 1 0 Oligotropha carboxidovorans 0 1 40137 502 species 4 0 1 1649510 2 407 genus Variibacter Variibacter gotjawalensis species 403 1 1333996 0 Bosea 40 1 0 85413 5 3481 genus 1044 species 0 1526658 1 Bosea vaviloviae no rank 2397 2653178 3 0 Bosea sp. RAC05 species 880 1 1842539 0 Bosea sp. AS-1 694 species 0 1 2015316 Bosea sp. PAMC 26642 1 1792307 0 species 823 911 3 0 1 5 genus 826 Nitrobacter species 431 1 913 0 Nitrobacter winogradskyi 0 1 912 species 390 Nitrobacter hamburgensis Xanthobacteraceae 7 335928 0 1 51 family 3763 genus 1389 2 279 1 0 26 Xanthobacter Xanthobacter autotrophicus 1 280 0 species 1363 genus 1032 2 152053 1 0 10 Starkeya 1 921 0 1022 species Starkeya novella Azorhizobium genus 1291 2 6 0 1 21 1 7 0 1270 species Azorhizobium caulinodans Methylobacteriaceae 14924 family 112 119045 15 1 0 Methylobacterium 472 1 0 9 407 8172 genus species 1040 0 31998 1 Methylobacterium radiotolerans 1 114616 0 species 1080 Methylobacterium nodulans 657 species 0 418223 1 Methylobacterium phyllosphaerae Methylobacterium aquaticum species 1263 270351 1 0 no rank 3031 2615210 3 0 species 1069 1 426117 0 Methylobacterium sp. 4-46 Methylobacterium sp. C1 0 1479019 1 1018 species species 944 0 925818 1 Methylobacterium sp. AMS5 species 629 0 1 334852 Methylobacterium oryzae 3 2282523 0 5361 genus Methylobacterium populi species 1570 223967 1 0 Methylobacterium extorquens species 2966 1 408 0 825 species 0 1 29429 Methylobacterium zatmanii 21 0 1 186650 2 1279 genus Microvirga Microvirga ossetica 1 1882682 0 species 1258 Rhodobiaceae family 396 0 1 119043 3 1 Parvibaculum genus 395 2 256616 0 1 13 Parvibaculum lavamentivorans 382 species 1 256618 0 55 18 45401 0 1 8342 family Hyphomicrobiaceae Devosia genus 2881 0 1 4 46913 65 0 196773 3 2816 no rank Devosia sp. I507 603 species 1 2083786 0 0 1 1736675 species 1246 Devosia sp. A16 Devosia sp. H5989 species 967 1643450 1 0 Filomicrobium 2 119044 0 1 2 genus 306 Candidatus Filomicrobium marinum 0 1 1608628 304 species Rhodoplanes 1 0 29407 2 52 genus 979 no rank 927 0 2619116 1 Rhodoplanes sp. Z2-YC6860 927 species 0 1 674703 Hyphomicrobium genus 2195 0 1 81 4 15 754 species 0 53399 1 Hyphomicrobium denitrificans 759 species 0 1427356 1 Hyphomicrobium nitrativorans 667 no rank 0 2619925 1 Hyphomicrobium sp. MC1 667 species 1 717785 0 Pelagibacterium 8 1 0 1082930 2 467 genus Pelagibacterium halotolerans species 459 0 1 531813 genus 939 0 1 59282 2 17 Blastochloris 922 species 1079 1 0 Blastochloris viridis 520 genus 0 1 1068 520 species 0 1 1069 Rhodomicrobium vannielii 3487 family 2 18 772 1 0 Bartonellaceae genus 3485 17 773 0 1 31 Bartonella no rank 893 0 2645622 6 0 1933907 1 134 species Bartonella sp. JB63 0 1 1933912 149 species Bartonella sp. Raccoon60 1 1933904 0 species 185 Bartonella sp. WD16.2 Bartonella sp. 1-1C 1 515256 0 142 species 0 1 1933906 species 134 Bartonella sp. JB15 0 1933910 1 species 149 Bartonella sp. A1379B 0 1 38323 species 116 Bartonella henselae 85701 1 0 species 246 Bartonella tribocorum Bartonella ancashensis 1318743 1 0 species 199 0 1 803 108 species Bartonella quintana 0 1 33045 species 240 Bartonella grahamii Bartonella vinsonii 0 1 33047 species 168 Bartonella clarridgeiae 242 species 1 56426 0 Bartonella apis species 989 1686310 1 0 species 125 0 774 1 Bartonella bacilliformis 128 species 0 388640 1 Bartonella australis Rhizobiaceae 39412 family 470 82115 53 1 0 Liberibacter 729 genus 3 34019 6 1 0 Candidatus Liberibacter solanacearum 556287 1 0 species 179 247 species 0 1273132 1 Liberibacter crescens 0 309868 1 species 88 Candidatus Liberibacter americanus 1 34020 0 100 species Candidatus Liberibacter africanus Candidatus Liberibacter asiaticus 1 34021 0 112 species no rank 7809 10 227292 0 1 0 7 28105 151 genus 6377 Sinorhizobium 0 663276 1 1844 species group Sinorhizobium fredii species 1844 0 380 1 Sinorhizobium medicae 0 110321 1 610 species 194963 1 0 853 species Sinorhizobium americanum 0 2613772 2 no rank 1373 Sinorhizobium sp. RAC02 758 species 0 1842534 1 Sinorhizobium sp. CCBAU 05631 0 794846 1 species 615 Sinorhizobium meliloti species 1546 382 1 0 12 1 0 106591 3 1432 genus Ensifer Ensifer sojae 648 species 1 716925 0 Ensifer adhaerens species 772 0 1 106592 994 genus 8 323620 2 1 0 Shinella 2643062 1 0 no rank 986 Shinella sp. HZN7 0 1 879274 species 986 0 227290 34 no rank 29410 genus 20375 0 1 25 379 1640 Rhizobium Rhizobium gallicum 56730 1 0 1162 species 0 1 396 species 1240 Rhizobium phaseoli Rhizobium leguminosarum 384 1 0 4483 species Rhizobium tropici 0 1 398 species 862 species 2182 0 29449 1 Rhizobium etli 8806 no rank 19 2613769 0 1106 species 1571470 1 0 Rhizobium sp. ACO-34A 130 species 1 1703966 0 Rhizobium sp. N731 Rhizobium sp. Kim5 0 1 2020311 species 430 0 2020312 1 569 species Rhizobium sp. CIAT894 650 species 0 1703969 1 Rhizobium sp. N324 0 1703967 1 species 1 Rhizobium sp. N741 Rhizobium sp. 10195 0 2028343 1 species 722 1703965 1 0 species 1 Rhizobium sp. N6212 Rhizobium sp. N1314 130 species 0 1703961 1 Rhizobium sp. NT-26 species 693 0 1125847 1 Rhizobium sp. N1341 1 1703962 0 species 1 species 965 1 2048897 0 Rhizobium sp. NXC24 Rhizobium sp. N621 0 1703964 1 species 1 species 696 1 1914541 0 Rhizobium sp. Y9 Rhizobium sp. S41 752 species 0 1869170 1 140 species 0 1 2020313 Rhizobium sp. TAL182 Rhizobium sp. IRBG74 424182 1 0 745 species 1 1301032 0 567 species Rhizobium sp. IE4771 Rhizobium sp. NXC14 507 species 1981173 1 0 genus 1469 2 1525371 0 1 9 Neorhizobium Neorhizobium galegae 399 1 0 1460 species Agrobacterium genus 7566 357 7 0 1 161 0 373 1 species 789 Agrobacterium vitis 1492 no rank 2632611 2 0 1842536 1 0 species 602 Agrobacterium sp. RAC06 species 890 1 861208 0 Agrobacterium sp. H13-3 Agrobacterium rhizogenes 359 1 0 species 878 species group 4246 0 2 1183400 909 species 0 1176649 1 Agrobacterium fabrum Agrobacterium tumefaciens 1 358 0 3337 species Methylocystaceae 1 0 31993 6 4 family 1407 707 genus 15 133 3 1 0 Methylocystis 359 species 655015 1 0 Methylocystis bryophila 333 no rank 1 2625913 0 Methylocystis sp. SC2 0 1 187303 333 species genus 696 0 1 425 2 36 Methylosinus species 660 1 426 0 Methylosinus trichosporium family 5152 118882 20 1 0 47 Brucellaceae Ochrobactrum 32 0 1 528 5 2753 genus 0 1 571256 species 744 Ochrobactrum pituitosum 698 species 0 1 271865 Ochrobactrum sp. A44 species 725 529 1 0 Ochrobactrum anthropi Ochrobactrum pseudogrignonense 419475 1 0 species 554 genus 2352 0 1 234 14 798 Brucella species 78 0 1 29459 Brucella melitensis Brucella canis 0 1 36855 130 species 0 1 120577 147 species Brucella ceti species 154 0 981386 1 Brucella vulpis Brucella ovis 29 species 236 1 0 4 2632610 0 657 no rank 1891098 1 0 40 species Brucella sp. 2002734562 Brucella sp. 09RB8471 0 1149952 1 species 178 Brucella sp. 141012304 0 1885919 1 192 species 1844051 1 0 247 species Brucella sp. 09RB8910 0 1 120576 species 129 Brucella pinnipedialis 94 species 0 29461 1 Brucella suis 1 444163 0 species 63 Brucella microti 73 species 0 1 235 Brucella abortus 0 6 119042 2170 no rank Pseudorhodoplanes genus 578 1734920 2 1 0 41 species 537 0 1235591 1 Pseudorhodoplanes sinuspersici Methyloceanibacter 1484898 2 1 0 21 genus 885 Methyloceanibacter caenitepidi species 864 1 1384459 0 Hartmannibacter 707 genus 17 0 1 2 1572860 Hartmannibacter diazotrophicus 0 1482074 1 species 690 Rhodospirillales 44972 order 569 1 0 67 204441 Rhodospirillaceae 31 41295 1 0 404 family 26944 Azospirillum 5 191 0 1 151 genus 9489 Azospirillum humicireducens 1 1226968 0 880 species 1 193 0 3451 species Azospirillum lipoferum 0 192 1 species 2985 Azospirillum brasilense 1 528244 0 2022 species Azospirillum thiophilum Tistrella 1364 genus 68 171436 2 0 1 0 171437 1 1296 species Tistrella mobilis Magnetospira 1 2 1182780 1 0 483 genus no rank 482 1 2685734 0 species 482 0 1 1288970 Magnetospira sp. QH-2 1612157 2 0 1 10 genus 612 Pararhodospirillum 1 1084 0 602 species Pararhodospirillum photometricum Thalassospira 33 1 0 168934 3 1615 genus Thalassospira xiamenensis 603 species 0 1 220697 Thalassospira sp. CSC3H3 979 species 0 1 2048283 34 0 1 2 1543704 1503 genus Niveispirillum 1469 species 1612173 1 0 Niveispirillum cyanobacteriorum 29 3 1081 1 0 2239 genus Rhodospirillum 730 species 1085 1 0 Rhodospirillum rubrum Rhodospirillum centenum 34018 1 0 species 1480 209 1 0 5 13134 6321 genus Magnetospirillum 55518 1 0 species 1625 Magnetospirillum gryphiswaldense Magnetospirillum magneticum 1 84159 0 1694 species no rank 2793 0 2617991 2 Magnetospirillum sp. XM-1 1355 species 1 1663591 0 0 1639348 1 species 1438 Magnetospirillum sp. ME-1 Haematospirillum 1804663 2 0 1 3 genus 236 Haematospirillum jordaniae 1549855 1 0 species 233 297 genus 1 2 1263978 0 1 Candidatus Endolissoclinum 296 species 0 1 1263979 Candidatus Endolissoclinum faulkneri 2381 genus 6 1543705 2 0 1 Nitrospirillum Nitrospirillum amazonense 2375 species 1 28077 0 278 35 433 0 1 17459 family Acetobacteraceae Asaia 0 1 91914 2 1 genus 418 91915 1 0 species 417 Asaia bogorensis 554 genus 5 1 0 2 320496 Neoasaia 1 320497 0 species 549 Neoasaia chiangmaiensis Gluconacetobacter genus 691 2 89583 1 0 10 Gluconacetobacter diazotrophicus species 681 33996 1 0 Acidiphilium genus 1274 0 1 3 522 42 species 648 524 1 0 Acidiphilium cryptum species 584 62140 1 0 Acidiphilium multivorum 52 3 125216 1 0 2701 genus Roseomonas 1325 no rank 0 1 2617492 1 2018065 0 species 1325 Roseomonas sp. FDAARGOS_362 Roseomonas gilardii 0 1 257708 1324 species 2 153497 0 1 3 genus 528 Kozakia species 525 153496 1 0 Kozakia baliensis 1 2 1602345 1 0 532 genus Parasaccharibacter Parasaccharibacter apium 0 1510841 1 species 531 2 364409 1 0 28 genus 1442 Granulibacter 0 1 364410 1414 species Granulibacter bethesdensis 1434011 5 0 1 74 genus 2763 Komagataeibacter Komagataeibacter europaeus species 483 0 1 33995 28448 1 0 species 1176 Komagataeibacter xylinus Komagataeibacter nataicola 600 species 0 1 265960 1 1177712 0 430 species Komagataeibacter medellinensis 3 441 0 1 17 genus 1469 Gluconobacter 974 species 1 442 0 Gluconobacter oxydans 318683 1 0 478 species Gluconobacter albidus genus 4809 1 0 8 434 53 Acetobacter 1076596 1 0 species 643 Acetobacter persici 616 subgenus 151157 1 0 Acetobacter aceti 616 species 1 435 0 Acetobacter pomorum 1 65959 0 428 species species 1419 1 438 0 Acetobacter pasteurianus 1 446692 0 685 species Acetobacter senegalensis Acetobacter oryzifermentans 331 species 0 1 1633874 1 104102 0 634 species Acetobacter tropicalis Sphingomonadales 305 1 0 82 204457 41542 order 59 41297 0 1 294 family 32876 Sphingomonadaceae 1 2709685 0 374 genus Sphingorhabdus flavimaris 374 species 1 266812 0 2 72173 1 0 9 genus 661 Citromicrobium 652 no rank 1 2630544 0 Citromicrobium sp. JL477 species 652 1634516 1 0 Blastomonas 23 2 150203 0 1 787 genus 764 no rank 0 2626550 1 0 1 1842535 764 species Blastomonas sp. RAC04 Zymomonas 0 1 541 2 7 genus 734 0 1 542 727 species Zymomonas mobilis Sphingomonas 9946 genus 198 0 1 13687 15 1 1609977 0 533 species Sphingomonas hengshuiensis 0 93064 1 species 663 Sphingomonas koreensis 0 1 152682 1058 species Sphingomonas melonis Sphingomonas panacis species 545 0 1560345 1 species 1521 1 0 160791 2 732 Sphingomonas wittichii 0 1283312 1 789 strain Sphingomonas sp. DC-6 761 species 0 1549858 1 Sphingomonas taxi 6 196159 0 3824 no rank Sphingomonas sp. NIC1 778 species 1961362 1 0 Sphingomonas sp. LK11 species 648 0 1 1390395 Sphingomonas sp. KC8 1030157 1 0 species 462 Sphingomonas sp. MM-1 0 1 745310 901 species species 523 0 1938607 1 Sphingomonas sp. LM7 1 1327635 0 512 species Sphingomonas sp. Cra20 Sphingomonas sanxanigenens species 843 0 397260 1 Sphingopyxis 4759 genus 122 0 1 165697 10 0 1 267128 649 species Sphingopyxis granuli 0 1 117207 506 species Sphingopyxis alaskensis Sphingopyxis fribergensis 1515612 1 0 412 species species 371 33052 1 0 Sphingopyxis terrae Sphingopyxis macrogoltabida 1096 species 0 33050 1 no rank 1603 2614943 4 0 212 species 0 1 1913578 Sphingopyxis sp. LPB0140 Sphingopyxis sp. 113P3 1 292913 0 species 401 Sphingopyxis sp. MG 481 species 1 1866325 0 Sphingopyxis sp. QXT-31 509 species 1357916 1 0 Novosphingobium 5 165696 0 1 50 genus 3182 Novosphingobium aromaticivorans 0 48935 1 850 species no rank 659 0 1 2644732 659 species 702113 1 0 Novosphingobium sp. PP1Y 158500 1 0 699 species Novosphingobium resinovorum species 924 1 205844 0 Novosphingobium pentaromativorans genus 702 0 1 2 1649486 12 Rhizorhabdus 0 1 1850238 species 690 Rhizorhabdus dicambivorans 180 0 1 165695 15 9408 genus Sphingobium Sphingobium japonicum 1 332056 0 species 557 1 1673076 0 species 932 Sphingobium hydrophobicum 1 332055 0 species 733 Sphingobium indicum species 625 46429 1 0 Sphingobium chlorophenolicum 4077 no rank 6 2611147 0 1843368 1 0 514 species Sphingobium sp. RAC03 473 species 1 1855519 0 Sphingobium sp. EP60837 0 1 484429 927 species Sphingobium sp. YBL2 0 627192 1 species 772 Sphingobium sp. SYK-6 species 804 1315974 1 0 Sphingobium sp. TKS Sphingobium sp. MI1205 0 407020 1 species 587 Sphingobium yanoikuyae 0 1 13690 species 892 species 418 0 76947 1 Sphingobium herbicidovorans Sphingobium cloacae 0 120107 1 species 483 Sphingobium baderi 511 species 1332080 1 0 genus 641 0 2685927 1 species 641 0 1921510 1 Sphingomonas sp. JJ-A5 37 3 1434046 0 1 1388 genus Sphingorhabdus 0 2 2614947 1351 no rank 968 species 1806885 1 0 Sphingorhabdus sp. M41 0 1 2077182 383 species Sphingorhabdus sp. YGSMI21 Erythrobacteraceae 8361 family 147 22 335929 0 1 16 3 1295327 1 0 1274 genus Croceicoccus species 705 0 1 450378 Croceicoccus marinus species 553 0 1 1348774 Croceicoccus naphthovorans genus 563 1 2800682 0 species 563 645517 1 0 Altererythrobacter namhicola 29 361177 4 1 0 1402 genus Altererythrobacter 234 species 0 476157 1 Altererythrobacter ishigakiensis 0 1267766 1 species 576 Altererythrobacter atlanticus 0 1 361183 species 563 Altererythrobacter epoxidivorans 386 genus 1 2800685 0 Altererythrobacter marensis 543877 1 0 species 386 667 genus 2 2800686 0 Altererythrobacter dongtanensis species 334 0 692370 1 1982042 1 0 333 species Altererythrobacter mangrovi genus 797 2 1855416 0 Erythrobacter seohaensis species 478 1 266951 0 Erythrobacter flavus 1 192812 0 319 species no rank 2278 6 2800788 0 genus 943 1111 3 0 1 10 Porphyrobacter no rank 933 0 2 2683265 Porphyrobacter HT-58-2 species 492 2023229 1 0 441 species 1896196 1 0 Porphyrobacter sp. LM 6 Erythrobacter genus 1335 3 1041 0 1 29 Erythrobacter litoralis 650 species 39960 1 0 0 1 1112 species 656 Porphyrobacter neustonensis genus 847 2 2800681 0 Erythrobacter gangjinensis species 551 0 1 502682 0 1648404 1 species 296 Erythrobacter atlanticus 0 1921002 5 order 598 Caedimonadaceae 2100208 2 1 0 6 family 150 144 genus 1509243 1 0 species 144 0 1509244 1 Candidatus Nucleicultrix amoebiphila 44746 1 0 230 family 0 1 204454 no rank 230 endosymbiont of Acanthamoeba sp. UWC8 86106 1 0 230 species Candidatus Paracaedibacteraceae 1 0 1 2 1777752 218 family genus 217 0 1521255 1 1 91604 0 species 217 Candidatus Paracaedibacter acanthamoebae 0 2 2800059 460 order 0 2 2800061 family 460 Maricaulis genus 460 0 1 74317 2 2 Maricaulis maris species 458 0 1 74318 Rickettsiales order 6124 0 1 53 766 5 no rank 268 0 1699067 1 Rickettsiales bacterium Ac37b 1528098 1 0 species 268 Candidatus Midichloriaceae 107 family 5 1 0 1328881 2 genus 102 411566 1 0 Candidatus Midichloria mitochondrii 234827 1 0 species 102 Anaplasmataceae family 2486 942 23 1 0 3 tribe 1042 952 8 0 Wolbachia 8 8 953 0 1 1042 genus 7 2640676 0 no rank 1034 1 163164 0 species 134 Wolbachia endosymbiont of Drosophila melanogaster species 51 100901 1 0 Wolbachia endosymbiont of Onchocerca ochengi 77038 1 0 species 334 Wolbachia endosymbiont of Drosophila simulans species 51 0 1 77551 Wolbachia endosymbiont of Onchocerca volvulus species 197 1 66084 0 Wolbachia sp. wRi species 184 0 1 246273 Wolbachia endosymbiont of Cimex lectularius species 83 80849 1 0 Wolbachia endosymbiont of Brugia malayi Neorickettsia 4 33993 1 0 1 genus 333 Neorickettsia risticii 0 1 950 species 87 Neorickettsia helminthoeca species 194 33994 1 0 951 1 0 51 species Neorickettsia sennetsu genus 275 0 1 768 4 1 Anaplasma Anaplasma centrale 1 769 0 80 species 1 106179 0 species group 92 Anaplasma phagocytophilum 948 1 0 92 species Anaplasma marginale 0 1 770 102 species genus 833 6 943 1 0 6 Ehrlichia no rank 199 1 106181 0 Ehrlichia sp. HF species 199 1 391036 0 106178 4 0 628 species group species 135 1 35795 0 Ehrlichia muris Ehrlichia ruminantium 0 1 779 species 195 112 species 0 945 1 Ehrlichia chaffeensis Ehrlichia canis species 186 944 1 0 2 775 26 0 1 3258 family Rickettsiaceae 262 genus 0 2115980 1 262 species 1 2115978 0 Candidatus Phycorickettsia trachydisci 24 33988 0 2994 tribe 296 780 23 0 1 2644 genus Rickettsia 2 1129742 0 species group 418 Rickettsia bellii 250 species 0 1 33990 168 species 788 1 0 Rickettsia canadensis 0 114292 2 538 species group Rickettsia typhi 0 785 1 species 244 Rickettsia prowazekii 782 1 0 294 species no rank 228 1 114295 0 Rickettsia endosymbiont of Bemisia tabaci 337479 1 0 228 species 114277 17 0 1164 species group Rickettsia japonica 24 species 1 35790 0 0 35792 1 species 11 Rickettsia parkeri Rickettsia rhipicephali 35 species 0 1 33992 Rickettsia peacockii 38 species 47589 1 0 species 40 33989 1 0 Rickettsia amblyommatis 6 species 0 1 35794 Rickettsia slovaca 783 1 0 species 54 Rickettsia rickettsii Rickettsia heilongjiangensis 1 226665 0 24 species Rickettsia felis species 271 1 42862 0 Rickettsia africae 0 35788 1 16 species Rickettsia conorii 0 1 781 species 15 species 37 0 35791 1 Rickettsia massiliae Rickettsia akari species 203 0 786 1 Rickettsia philipii 33 species 1105106 1 0 Rickettsia monacensis 122 species 1 109232 0 0 1 787 210 species Rickettsia australis Rickettsia montanensis 1 33991 0 25 species 350 genus 69474 1 0 Orientia tsutsugamushi 0 784 1 species 350 class 1509 1807140 6 0 Acidithiobacillales 61 225057 6 1 0 1509 order Acidithiobacillaceae family 1448 1 0 225058 5 31 11 4 119977 0 1 1417 genus Acidithiobacillus 0 1 920 447 species Acidithiobacillus ferrooxidans 0 160808 1 species 549 Acidithiobacillus ferrivorans 0 1 33059 410 species Acidithiobacillus caldus Betaproteobacteria 347 28216 1 0 545 class 250077 Burkholderiales 201516 order 2274 0 1 233 80840 0 224471 17 10797 no rank 1400 genus 59 28067 2 0 1 Rubrivivax species 1341 0 28068 1 Rubrivivax gelatinosus Mitsuaria 65047 2 1 0 57 genus 1177 no rank 1120 0 1 2648776 1120 species 0 1 1658665 Mitsuaria sp. 7 Thiomonas 2 32012 0 1 23 genus 1219 926 1 0 1196 species Thiomonas intermedia Leptothrix 88 2 1 0 39 genus 1028 Leptothrix cholodnii 0 1 34029 989 species Rhizobacter 1 0 2 212743 65 genus 1195 Rhizobacter gummiphilus species 1130 0 946333 1 genus 1499 0 1 93681 2 42 Roseateles 76731 1 0 1457 species Roseateles depolymerans [Polyangium] brachysporum 1105 species 0 1 413882 Paucibacter genus 1020 1 0 2 318147 31 2642959 1 0 989 no rank 0 1768242 1 species 989 Paucibacter sp. KCTC 42545 genus 1154 1 0 2 316612 33 Methylibium Methylibium petroleiphilum species 1121 0 105560 1 Alcaligenaceae 39907 family 370 1 0 506 42 1 29574 3 1 0 456 genus Taylorella 0 84590 1 species 230 Taylorella asinigenitalis Taylorella equigenitalis 29575 1 0 species 225 1127 genus 85 359336 2 0 1 Castellaniella 0 1 75697 species 1042 Castellaniella defragrans 0 1 1100891 207 genus Paenalcaligenes hominis 643674 1 0 species 207 17885 genus 561 1 0 17 517 Bordetella Bordetella genomosp. 9 1061 species 0 1 1416803 0 463024 1 species 1087 Bordetella genomosp. 6 Bordetella pertussis 0 520 1 915 species species 2077 0 1 518 Bordetella bronchiseptica Bordetella hinzii 1217 species 1 103855 0 species 1259 0 463025 1 Bordetella bronchialis 1280 species 0 1 1331258 Bordetella pseudohinzii Bordetella trematum species 995 0 1 123899 Bordetella petrii species 1102 0 1 94624 species 1168 0 1416806 1 Bordetella genomosp. 8 species 1089 0 463014 1 Bordetella flabilis 1021 species 0 463040 1 Bordetella genomosp. 13 1059 species 0 519 1 Bordetella parapertussis Bordetella avium species 534 0 521 1 482 species 1 35814 0 Bordetella holmesii no rank 978 0 2630031 1 1 1697043 0 978 species Bordetella sp. H567 genus 14702 222 6 0 1 438 Achromobacter Achromobacter xylosoxidans 1 85698 0 species 5945 Achromobacter spanius 0 217203 1 2398 species species 1322 217204 1 0 Achromobacter insolitus no rank 1409 1 2626865 0 1758194 1 0 species 1409 Achromobacter sp. AONIH1 32002 1 0 3190 species Achromobacter denitrificans 0 1 90243 genus 338 species 338 1 90245 0 Oligella urethralis genus 1393 0 1 507 2 11 Alcaligenes 511 1 0 1382 species Alcaligenes faecalis 1467 genus 9 0 1 1921582 2 Orrella Orrella dioscoreae species 1458 0 1 1851544 Basilea 1 0 2 1472344 4 genus 359 Basilea psittacipulmonis 0 1472345 1 species 355 916 genus 3 0 1 290425 3 Advenella Advenella mimigardefordensis 302406 1 0 518 species Advenella kashmirensis species 395 0 1 310575 Pusillimonas 305976 2 1 0 2 genus 687 2640016 1 0 685 no rank 685 species 1007105 1 0 Pusillimonas sp. T7-7 Comamonadaceae family 53016 80864 59 1 0 1016 genus 699 352450 2 0 1 13 Simplicispira Simplicispira sp. SC1-8 1 2109915 0 686 species 1515 genus 0 2 2490452 648 species 1 1458425 0 Comamonadaceae bacterium A1 Comamonadaceae bacterium B1 1458426 1 0 species 867 Variovorax 107 5 34072 0 1 7244 genus no rank 2483 663243 2 0 Variovorax sp. PAMC 28711 species 704 0 1795631 1 Variovorax sp. PMC12 0 2126319 1 1779 species Variovorax boronicumulans 0 1 436515 species 1157 0 34073 1 3497 species Variovorax paradoxus Rhodoferax genus 3531 0 1 5 28065 39 592 species 0 192843 1 Rhodoferax ferrireducens Rhodoferax antarcticus 0 81479 1 species 837 Rhodoferax koreense 0 1 1842727 species 1188 Rhodoferax saidenbachensis 1484693 1 0 875 species Hydrogenophaga 3361 genus 58 47420 4 1 0 no rank 2454 0 2610897 2 Hydrogenophaga sp. RAC07 0 1 1842537 species 958 Hydrogenophaga sp. PBC 0 1 795665 1496 species 849 species 1 1763535 0 Hydrogenophaga crassostreae Acidovorax 9 12916 1 0 444 genus 9124 80869 1 0 species 1157 Acidovorax citrulli Acidovorax ebreus 1031 species 721785 1 0 1 553814 0 1020 species Acidovorax sp. NA3 0 1 80867 1196 species Acidovorax avenae 4276 no rank 2684926 4 0 1216 species 0 358220 1 Acidovorax sp. KKS102 species 1215 1 232721 0 Acidovorax sp. JS42 Acidovorax sp. RAC01 903 species 1 1842533 0 Acidovorax sp. T1 species 942 1 1858609 0 1649468 2 1 0 17 genus 1367 Melaminivora 1 2641902 0 1350 no rank 0 2109913 1 species 1350 Melaminivora sp. SC2-9 Comamonas 4 283 0 1 111 genus 4624 species 1993 1 285 0 Comamonas testosteroni 0 225992 1 1211 species Comamonas kerstersii species 1309 1082851 1 0 Comamonas serinivorans 2085 genus 8 3 52972 1 0 Polaromonas Polaromonas naphthalenivorans 1062 species 0 1 216465 1015 no rank 1 2638319 0 0 1 296591 species 1015 Polaromonas sp. JS666 Candidatus Symbiobacter 1 0 2 1436289 3 genus 565 species 562 1436290 1 0 Candidatus Symbiobacter mobilis Verminephrobacter 846 genus 1 0 1 2 364316 1 364317 0 species 845 Verminephrobacter eiseniae genus 1632 1 0 201096 2 11 Alicycliphilus Alicycliphilus denitrificans 0 1 179636 1621 species Limnohabitans genus 825 665874 3 1 0 6 2 2626134 0 819 no rank 1 1678128 0 590 species Limnohabitans sp. 63ED37-2 Limnohabitans sp. 103DPR2 0 1 1678129 species 229 1 2678886 0 1336 genus 0 2116657 1 1336 species Melaminivora sp. SC2-7 80865 5 1 0 221 genus 6977 Delftia Delftia acidovorans 1 80866 0 species 1571 1881 species 180282 1 0 Delftia tsuruhatensis 3304 no rank 0 2 2613839 species 1807 1 742013 0 Delftia sp. Cs1-4 1497 species 1 1920191 0 Delftia sp. HK171 Ramlibacter 93 1 0 174951 2 2838 genus 2745 species 0 1 94132 Ramlibacter tataouinensis Diaphorobacter genus 1190 2 238749 0 1 4 0 1 1546149 1186 species Diaphorobacter polyhydroxybutyrativorans 2241 genus 14 1 0 3 219181 Ottowia 0 2645081 1 1064 no rank 1064 species 1658672 1 0 Ottowia sp. oral taxon 894 Ottowia sp. KADR8-3 0 2109914 1 1163 species family 71398 83 119060 1 0 509 Burkholderiaceae Cupriavidus 437 1 0 9 106589 11632 genus 1 106590 0 species 2220 Cupriavidus necator 0 1 367825 1533 species Cupriavidus sp. USMAA1020 Cupriavidus basilensis species 1228 0 1 68895 3141 no rank 0 2 2640874 Cupriavidus sp. USMAHM13 species 1313 1 1389192 0 1 876364 0 species 1828 Cupriavidus sp. USMAA2-4 0 1 82541 species 929 Cupriavidus gilardii 1069 species 0 1 248026 Cupriavidus pinatubonensis 0 119219 1 species 1075 Cupriavidus metallidurans genus 597 0 3 44013 Polynucleobacter asymbioticus 203 species 1 576611 0 1 1835254 0 280 species Polynucleobacter duraquae Polynucleobacter necessarius 0 1 576610 species 114 Burkholderia 32008 41 1 0 1497 genus 34250 Burkholderia plantarii 0 41899 1 1278 species 2613784 11 0 5995 no rank Burkholderia sp. PAMC 26561 species 486 1 1795043 0 1 1740163 0 species 528 Burkholderia sp. Bp7605 Burkholderia sp. CCGE1003 0 1 640512 592 species Burkholderia sp. RPE67 757 species 0 758796 1 0 1 1678678 627 species Burkholderia sp. HB1 Burkholderia sp. CCGE1001 0 1 640510 558 species Burkholderia sp. YI23 1 1097668 0 747 species 402 species 1 1468409 0 Burkholderia sp. 2002721687 501 species 0 1 1795874 Burkholderia sp. PAMC 28687 0 1 416344 species 403 Burkholderia sp. KJ006 394 species 0 1 1740162 Burkholderia sp. Bp5365 19 87882 0 species group 16771 Burkholderia diffusa 0 488732 1 519 species Burkholderia seminalis 1 488731 0 species 442 Burkholderia stabilis 95485 1 0 species 860 0 1 1207504 species 451 Burkholderia pseudomultivorans 629 species 0 1 488447 Burkholderia contaminans Burkholderia territorii 0 1503055 1 species 380 1 1503054 0 491 species Burkholderia stagnalis Burkholderia vietnamiensis species 674 60552 1 0 372 species 0 60550 1 Burkholderia pyrrocinia Burkholderia metallica 363 species 1 488729 0 0 482957 1 841 species Burkholderia lata Burkholderia ambifaria species 940 1 152480 0 0 1 265293 species 491 [Pseudomonas] mesoacidophila Burkholderia multivorans species 963 1 87883 0 Burkholderia ubonensis 0 1 101571 species 1567 0 1 488446 species 516 Burkholderia latens Burkholderia dolosa 0 152500 1 387 species Burkholderia cepacia species 3065 0 292 1 0 1 95486 2820 species Burkholderia cenocepacia 4615 species group 0 111527 7 Burkholderia oklahomensis species 594 0 1 342113 Burkholderia pseudomallei 1 28450 0 1257 species Burkholderia sp. MSMB0852 0 1 1637841 species 540 species 1137 0 1 57975 Burkholderia thailandensis 0 1 1637837 species 392 Burkholderia sp. MSMB0266 Burkholderia mallei species 395 0 13373 1 Burkholderia sp. MSMB617WGS 1 1637831 0 300 species Burkholderia gladioli 28095 1 0 species 2046 0 1 337 2048 species Burkholderia glumae Ralstonia genus 9063 0 1 48736 5 283 1 329 0 species 2028 Ralstonia pickettii Ralstonia mannitolilytica 0 105219 1 species 1179 305 1 0 4234 species Ralstonia solanacearum 0 1 190721 species 1339 Ralstonia insidiosa 130 10 93217 0 1 5623 genus Pandoraea Pandoraea oxalativorans 0 1 573737 678 species 605 species 0 1 93220 Pandoraea pnomenusa Pandoraea apista 557 species 0 93218 1 Pandoraea pulmonicola 1 93221 0 592 species Pandoraea norimbergensis 93219 1 0 species 711 Pandoraea faecigallinarum 0 656179 1 508 species Pandoraea vervacti 0 1 656178 627 species Pandoraea thiooxydans species 574 0 1 445709 species 641 0 1 93222 Pandoraea sputorum 289 genus 0 2571159 1 289 species 412963 1 0 Paraburkholderia rhizoxinica 0 1827195 1 genus 663 species 663 1 758793 0 Burkholderia sp. RPE64 Paraburkholderia genus 8772 1822464 12 0 1 123 1 311230 0 616 species Paraburkholderia terrae Paraburkholderia xenovorans species 772 1 36873 0 Paraburkholderia phymatum species 849 0 1 148447 0 1 75105 1022 species Paraburkholderia caribensis Paraburkholderia hospita 1 169430 0 species 885 Paraburkholderia phytofirmans 1 261302 0 species 724 Paraburkholderia fungorum species 857 1 134537 0 Paraburkholderia phenoliruptrix 558 species 1 252970 0 Paraburkholderia sprentiae 903 species 948107 1 0 1 2615204 0 no rank 573 573 species 1 1926494 0 Paraburkholderia sp. SOS3 Paraburkholderia aromaticivorans 890 species 2026199 1 0 0 80841 2 805 no rank Burkholderiales bacterium GJ-E10 0 1469502 1 species 363 Burkholderiales bacterium YL45 1 1834205 0 species 442 Oxalobacteraceae 243 0 1 29 75682 23319 family Collimonas 3774 genus 59 1 0 4 202907 Collimonas pratensis 1 279113 0 1263 species species 1313 279058 1 0 Collimonas arenae species 1139 0 1 158899 Collimonas fungivorans genus 830 0 1 3 303379 31 Herminiimonas Herminiimonas arsenicoxydans 414 species 0 1 204773 1809410 1 0 species 385 Herminiimonas arsenitoxidans genus 4945 0 1 7 29580 67 Janthinobacterium 0 1 55508 species 860 Janthinobacterium agaricidamnosum no rank 3114 0 2610881 4 0 1 375286 501 species Janthinobacterium sp. Marseille Janthinobacterium sp. B9-8 species 454 1236179 1 0 Janthinobacterium sp. LM6 0 1938606 1 913 species Janthinobacterium sp. 1_2014MBL_MicDiv 0 1 1644131 1246 species 0 368607 1 904 species Janthinobacterium svalbardensis Oxalobacter genus 466 0 1 2 846 1 Oxalobacter formigenes 1 847 0 465 species 6454 genus 252 1 0 963 6 Herbaspirillum Herbaspirillum hiltneri species 911 341045 1 0 92645 1 0 species 1676 Herbaspirillum frisingense 964 1 0 1449 species Herbaspirillum seropedicae Herbaspirillum rubrisubalbicans 0 80842 1 species 1388 1 2624150 0 778 no rank Herbaspirillum sp. meg3 species 778 0 2025949 1 6 149698 1 0 134 genus 6607 Massilia Massilia sp. ZMN-3 1 2072590 0 species 1521 2 2609279 0 2843 no rank Massilia sp. NR 4-1 1678028 1 0 1639 species Massilia sp. WG5 0 1 1707785 1204 species Massilia sp. B2 species 1191 1 2045208 0 Massilia putida 918 species 0 1141883 1 Nitrosomonadales 10210 order 92 42 32003 0 1 0 4 2772226 family 1065 genus 561 1 0 2 1778653 6 Sulfuriferula 1 2637784 0 555 no rank 555 species 1985873 1 0 Sulfuriferula sp. AH1 Sulfuricella 18 2 935200 1 0 504 genus Sulfuricella denitrificans 486 species 0 649841 1 Gallionellaceae 90627 5 0 1 35 family 1499 2 314343 0 1 27 genus 947 Sideroxydans Sideroxydans lithotrophicus species 920 0 1 63745 Gallionella 30 1 0 96 2 517 genus Gallionella capsiferriformans 370405 1 0 487 species 3 2008790 0 1 6 family 439 Thiobacillaceae genus 433 919 2 1 0 3 Thiobacillus species 430 36861 1 0 Thiobacillus denitrificans Sterolibacteriaceae 29 1 0 2008793 5 1919 family 1 0 1054211 2 70 genus 1063 Sulfuritalea Sulfuritalea hydrogenivorans 748811 1 0 species 993 Methyloversatilis 378210 2 0 1 8 genus 827 819 no rank 1 2639971 0 species 819 1842540 1 0 Methyloversatilis sp. RAC08 0 1 32011 12 15 family 2271 Methylophilaceae Methylotenera 528 genus 6 3 359407 1 0 0 359408 1 209 species Methylotenera mobilis Methylotenera versatilis species 313 0 1055487 1 16 1 0 327 genus 0 2630143 1 no rank 327 Methylophilus sp. TWE2 1 1662285 0 327 species 2 1679002 0 290 genus Candidatus Methylopumilus turicensis 146 species 0 1581680 1 144 species 0 1581557 1 Candidatus Methylopumilus planktonicus 3 81682 3 1 0 642 genus Methylovorus 0 1 2634027 293 no rank 1 887061 0 293 species Methylovorus sp. MP688 0 266009 1 species 346 Methylovorus glucosotrophus 404 2 1 0 5 genus 469 Methylobacillus Methylobacillus flagellatus species 464 1 405 0 Nitrosomonadaceae 25 1 0 12 206379 2925 family 1004 genus 6 35798 4 1 0 Nitrosospira 0 1 35799 295 species Nitrosospira briensis Nitrosospira multiformis species 331 0 1231 1 Nitrosospira lacus 1 1288494 0 species 372 genus 1896 7 914 1 0 9 Nitrosomonas 0 2 2609265 578 no rank 312 species 1 153948 0 Nitrosomonas sp. AL212 1 261292 0 266 species Nitrosomonas sp. Is79A3 Nitrosomonas europaea 422 species 0 915 1 species 269 44577 1 0 Nitrosomonas ureae 395 species 0 1 44574 Nitrosomonas communis 1 916 0 223 species Nitrosomonas eutropha 119066 11 0 1764 no rank 0 1 1301080 genus 45 0 1160784 1 45 species Candidatus Nasuia deltocephalinicola 2 327159 0 1 59 genus 980 Candidatus Accumulibacter Candidatus Accumulibacter phosphatis 0 1 327160 921 species genus 109 1 1381133 0 109 species 0 669502 1 Candidatus Profftella armatura genus 615 1 0 33055 6 12 Kinetoplastibacterium 0 1 994692 159 species Candidatus Kinetoplastibacterium desouzaii 97 species 0 1 994695 Candidatus Kinetoplastibacterium galatii 170 species 233181 1 0 Kinetoplastibacterium blastocrithidii Candidatus Kinetoplastibacterium crithidii 0 33056 1 103 species 994696 1 0 74 species Candidatus Kinetoplastibacterium oncopeltii genus 15 189384 1 0 0 189385 1 species 15 Candidatus Tremblaya princeps Rhodocyclales 254 206389 22 1 0 12785 order Zoogloeaceae 175 2008794 12 0 1 8830 family 209 1 0 6 33057 5223 genus Thauera 96773 1 0 678 species Thauera chlorobenzoica 2436 no rank 0 2 2609274 Thauera sp. K11 species 1369 1 2005884 0 species 1067 0 85643 1 Thauera sp. MZ1T Thauera humireducens 1119 species 0 1134435 1 0 59405 1 781 species Thauera aromatica 3432 genus 111 0 1 5 12960 Azoarcus no rank 1890 0 2629479 2 Azoarcus sp. CIB species 995 0 198107 1 Azoarcus sp. KH32C species 895 748247 1 0 Azoarcus olearius 688 species 418699 1 0 Azoarcus sp. SY39 0 1 2067960 743 species Azonexaceae 11 2008795 3 0 1 664 family Dechloromonas genus 653 73029 2 0 1 6 647 species 0 1 259537 Dechloromonas aromatica Rhodocyclaceae 3037 family 47 75787 6 1 0 489 genus 15 0 1 2 551759 Aromatoleum Aromatoleum aromaticum 551760 1 0 species 474 40 0 1 2 146937 1464 genus Azospira species 1424 146939 1 0 Azospira oryzae 1037 no rank 0 75788 1 1037 species 0 1898103 1 Rhodocyclaceae bacterium order 22424 36 206351 0 1 313 Neisseriales Chromobacteriaceae 13 1499392 0 1 118 family 9918 12 1 0 168470 2 1044 genus Laribacter 168471 1 0 species 1032 Laribacter hongkongensis 885864 2 0 1 9 genus 827 Jeongeupia 818 no rank 0 2619593 1 0 1906741 1 species 818 Jeongeupia sp. USM3 4 90153 0 5345 no rank Chromobacterium 5345 genus 80 1 0 535 4 no rank 1602 0 1 2641838 1602 species 0 2059672 1 Chromobacterium sp. ATCC 53434 1929 species 1108595 1 0 Chromobacterium vaccinii 1734 species 0 536 1 Chromobacterium violaceum 3 0 1 187 2 1299 genus Aquaspirillum 1 2620219 0 1296 no rank species 1296 1938604 1 0 Aquaspirillum sp. LM1 1285 genus 16 1 0 2 568394 Pseudogulbenkiania no rank 1269 0 1 2642558 0 748280 1 species 1269 Pseudogulbenkiania sp. NH8B 12193 family 114 22 481 1 0 Neisseriaceae genus 824 59 3 1 0 21 Vitreoscilla species 549 63 1 0 Vitreoscilla filiformis 254 no rank 1 2627922 0 Vitreoscilla sp. C1 254 species 0 96942 1 0 1 71 220 genus 0 1 72 220 species Simonsiella muelleri Snodgrassella 5 0 1 2 1193515 559 genus Snodgrassella alvi 0 1 1196083 species 554 Neisseria 0 1 12 482 202 genus 9353 species 746 485 1 0 Neisseria gonorrhoeae species 780 0 486 1 Neisseria lactamica 0 1 495 789 species Neisseria elongata Neisseria meningitidis 2086 species 0 1 487 863 species 0 1 488 Neisseria mucosa 1853278 1 0 649 species Neisseria sp. 10023 Neisseria zoodegmatis 1 326523 0 456 species 28091 1 0 species 523 Neisseria weaveri Neisseria sicca 619 species 490 1 0 1640 no rank 0 2623750 2 Neisseria sp. KEM232 1 655307 0 1216 species Neisseria sp. 10022 1 1853276 0 species 424 421605 1 0 448 no rank species 448 0 1 2052837 Neisseriaceae bacterium DSM 100970 Eikenella 675 genus 3 1 0 2 538 species 672 1 539 0 Eikenella corrodens no rank 833 2 33809 0 Betaproteobacteria bacterium GR16-43 0 1904640 1 644 species beta proteobacterium CB 1 543913 0 species 189 0 1708 1783272 clade 13405284 0 44 200795 11446 phylum class 2383 1 0 8 292625 4 Anaerolineae Anaerolineales 292629 7 0 1 17 order 2379 Anaerolineaceae 2362 family 19 1 0 292628 6 Brevefilum 2019482 2 0 1 3 genus 439 436 species 1 1986204 0 Brevefilum fermentans Anaerolinea 13 233189 2 0 1 816 genus Anaerolinea thermophila species 803 167964 1 0 1 1324991 0 1088 no rank 0 1889813 1 species 1088 Anaerolineaceae bacterium oral taxon 439 2495 class 7 301297 8 1 0 Dehalococcoidia 1434 order 4 1202465 0 Dehalococcoidaceae 4 1202464 1 0 4 family 1434 1430 genus 3 3 61434 0 1 Dehalococcoides Dehalococcoides mccartyi 1201 species 1 61435 0 no rank 226 237581 1 0 Dehalococcoides sp. UCH007 1 1522671 0 species 226 Dehalogenimonas 1 0 670486 3 8 genus 1054 Dehalogenimonas formicexedens 0 1 1839801 501 species Dehalogenimonas lykanthroporepellens 1 552810 0 545 species Thermomicrobia 30 7 189775 1 0 956 class 706 subclass 0 4 85000 order 706 0 1 85001 4 8 Sphaerobacterales suborder 698 255728 3 0 Sphaerobacteraceae 698 family 11 0 1 3 85002 0 1 2056 2 12 genus 687 Sphaerobacter 675 species 1 2057 0 Sphaerobacter thermophilus 189776 2 1 0 2 order 220 Thermomicrobiales family 218 0 189777 1 1 499 0 genus 218 species 218 500 1 0 Thermomicrobium roseum Ardenticatenia 1778 class 43 1 0 1382928 5 16 4 1382929 0 1 1735 order Ardenticatenales Ardenticatenaceae 0 1 1382930 3 8 family 1719 1 0 1988031 2 8 genus 1711 Candidatus Promineofilum Candidatus Promineofilum breve 0 1806508 1 species 1703 Chloroflexia class 2760 0 1 11 32061 15 Chloroflexales 2745 order 21 32064 10 1 0 1508595 4 0 suborder 1545 Roseiflexaceae 3 1 0 1508635 4 1545 family 10 120961 3 0 1 1542 genus Roseiflexus 759 no rank 0 1 2609473 357808 1 0 species 759 Roseiflexus sp. RS-1 120962 1 0 species 773 Roseiflexus castenholzii 5 1508594 0 suborder 1179 Chloroflexaceae 0 1 5 1106 3 family 1179 0 1 4 1107 7 genus 1176 Chloroflexus species 361 0 1 152260 Chloroflexus aggregans 808 species 405 2 1108 1 0 Chloroflexus aurantiacus Chloroflexus sp. Y-400-fl 0 480224 1 strain 403 10 1 0 475962 5 1074 class Caldilineae 16 1 0 4 475963 1064 order Caldilineales 1048 family 3 3 475964 0 1 Caldilineaceae Caldilinea 4 2 233191 0 1 1045 genus Caldilinea aerophila 1041 species 0 1 133453 0 67819 4 phylum 498 1663419 4 0 class 498 Fimbriimonadales 498 order 1 4 1663425 1 0 497 family 6 3 1663426 1 0 Fimbriimonadaceae Fimbriimonas 491 genus 1 1005038 2 0 1 Fimbriimonas ginsengisoli 490 species 1005039 1 0 0 1297 35 23168 phylum Deinococci 0 1 35 188787 130 class 23168 Thermales 16 68933 0 1 104 order 8381 8277 family 42 1 0 15 188786 Thermaceae 186191 1 0 genus 663 Marinithermus hydrothermalis species 663 0 186192 1 genus 1369 0 1 208447 2 14 Oceanithermus Oceanithermus profundus 1355 species 0 187137 1 4637 genus 174 0 1 270 8 Thermus 0 1 2619321 no rank 478 species 478 0 1 1111069 Thermus sp. CCB_US3_UF1 Thermus brockianus 273 species 0 1 56956 0 1 56957 species 608 Thermus oshimai Thermus scotoductus 1 37636 0 546 species 0 1 456163 530 species Thermus parvatiensis Thermus aquaticus 1 271 0 species 642 Thermus thermophilus species 1386 0 274 1 Meiothermus 8 0 1 65551 3 1566 genus Meiothermus silvanus 0 52022 1 species 649 Meiothermus ruber species 909 1 277 0 789 order 2762275 3 0 Trueperaceae 1 0 3 332247 3 family 789 786 genus 5 332248 2 1 0 Truepera Truepera radiovictrix 781 species 0 1 332249 Deinococcales order 13868 118964 15 1 0 121 Deinococcaceae 14 183710 1 0 127 family 13747 Deinococcus 1298 13 1 0 150 genus 13620 1309411 1 0 1038 species Deinococcus soli Cha et al. 2016 1217 species 1768108 1 0 Deinococcus actinosclerus Deinococcus gobiensis 502394 1 0 species 1575 639 species 0 1 432329 Deinococcus peraridilitoris 1036 species 0 1 1182568 Deinococcus puniceus Deinococcus proteolyticus 1718 species 1 55148 0 Deinococcus geothermalis 68909 1 0 986 species Deinococcus radiodurans 1 1299 0 1148 species 1614 species 0 1182571 1 Deinococcus swuensis Deinococcus maricopensis species 870 0 1 309887 976 no rank 1 2623546 0 Deinococcus sp. NW-56 1 2080419 0 species 976 0 310783 1 653 species Deinococcus deserti 2 1859062 0 no rank 324 Thermobaculum 5 1 0 262406 2 324 genus Thermobaculum terrenum 0 1 166501 319 species phylum 11622393 1 0 1239 723 491 Firmicutes 10628171 class 325 219 186801 0 1 Clostridia Clostridiales 10594731 order 28046 165 186802 1 0 2304686 12 0 family 51645 8682 genus 3 2304692 0 [Clostridium] clariflavum 288965 1 0 3494 species Herbivorax saccincola 0 1677857 1 species 2016 Ruminiclostridium thermocellum 1 1515 0 3172 species Fastidiosipila 20 1 0 2 236752 1308 genus 236753 1 0 species 1288 Fastidiosipila sanguinis 2735 genus 1 2304693 0 species 2735 0 84032 1 [Clostridium] thermosuccinogenes Ruminiclostridium genus 4673 1508657 2 1 0 370 species 4303 1 1521 0 [Clostridium] cellulolyticum genus 4947 1 0 1637257 2 10 Mageeibacillus 0 1 884684 species 4937 Mageeibacillus indolicus 26776 no rank 2305130 1 0 species 26776 1834198 1 0 Ruminiclostridium sp. KB18 1 2304691 0 genus 2524 [Clostridium] stercorarium species 2524 1510 1 0 family 2621 0 1 3 31984 15 Heliobacteriaceae Heliobacterium 1 0 2 2697 22 genus 2606 35701 1 0 2584 species Heliobacterium modesticaldum 493 0 1 541000 13 4655396 family Ruminococcaceae 253238 2 0 1 9 genus 10392 Ethanoligenens Ethanoligenens harbinense 0 1 253239 species 10383 Flavonifractor 73340 genus 151 946234 2 1 0 species 73189 0 292800 1 Flavonifractor plautii 88 1263 3 0 1 45464 genus Ruminococcus Ruminococcus bicirculans 34422 species 0 1 1160721 0 1264 1 10954 species Ruminococcus albus 0 2305133 1 no rank 9812 Ruminococcaceae bacterium CPB6 0 1572656 1 9812 species genus 1 0 1 1890281 Herbivorax Faecalibacterium 4512138 genus 2230 2 216851 0 1 species 4509908 0 1 853 Faecalibacterium prausnitzii 1 552397 0 no rank 3756 species 3756 29343 1 0 [Clostridium] cellulosi 0 3 68298 family 1246 genus 723 1 862 0 Syntrophomonas wolfei 0 863 1 723 species 2 129001 0 1 8 genus 523 Syntrophothermus species 515 0 86170 1 Syntrophothermus lipocalidus 1 0 12 186804 483 family 141686 Peptostreptococcaceae Paeniclostridium 1849828 2 1 0 2 genus 2516 Paeniclostridium sordellii 1 1505 0 2514 species Acetoanaerobium 5 186831 2 0 1 1821 genus species 1816 0 1511 1 Acetoanaerobium sticklandii genus 130795 1870884 2 0 1 468 Clostridioides Clostridioides difficile 1496 1 0 130327 species no rank 1507 1 1411023 0 Peptostreptococcaceae bacterium oral taxon 929 1507 species 1 2081703 0 12 0 1 2 44259 2269 genus Filifactor 143361 1 0 species 2257 Filifactor alocis 2295 genus 6 1481960 2 0 1 Peptoclostridium Peptoclostridium acidaminophilum 1 1731 0 species 2289 no rank 169399 0 10 538999 Clostridiales Family XVII. Incertae Sedis family 1950 3 539000 0 1 3 genus 1947 2 73918 1 0 16 Thermaerobacter 0 1 73919 species 1931 Thermaerobacter marianensis Intestinimonas 1083 0 1 2 1392389 65732 genus 1 1297617 0 64649 species Intestinimonas butyriciproducens Clostridiales Family XIII. Incertae Sedis 6948 family 36 0 1 543314 4 0 1 86331 2 23 genus 3159 Mogibacterium Mogibacterium diversum 0 114527 1 species 3136 species 3753 0 1 143393 [Eubacterium] sulci 94769 genus 1 2717089 0 0 2086584 1 species 94769 Mordavella sp. Marseille-P3756 Symbiobacteriaceae 3 543349 1 0 3 family 2750 2747 genus 24 0 1 2733 2 Symbiobacterium 2734 1 0 2723 species Symbiobacterium thermophilum 5278881 family 3290 0 1 27 186803 Lachnospiraceae Cellulosilyticum genus 6462 0 1 2 698776 4 Cellulosilyticum lentocellum 0 1 29360 species 6458 1 2569097 0 genus 256848 0 39488 1 species 256848 [Eubacterium] hallii 265639 genus 28050 1 0 [Eubacterium] eligens species 265639 1 39485 0 0 1 841 2 89 genus 853018 Roseburia Roseburia hominis 0 301301 1 852929 species 40451 genus 0 1 2719231 species 40451 1 84030 0 [Clostridium] saccharolyticum Anaerostipes 474406 genus 215 2 207244 0 1 0 649756 1 species 474191 Anaerostipes hadrus 0 1 4 1506553 979 genus 166871 Lachnoclostridium 17243 species 1 66219 0 Lachnoclostridium phytofermentans 0 1 2608895 no rank 59190 0 1 1834196 59190 species Lachnoclostridium sp. YL32 Lachnoclostridium phocaeense 89459 species 1871021 1 0 Herbinix genus 12597 0 1 2 1663717 5 Herbinix luporum species 12592 0 1 1679721 genus 6023 1 0 2039240 2 13 Anaerotignum 6010 species 0 28446 1 Anaerotignum propionicum no rank 2738334 0 2 186928 Lachnospiraceae bacterium oral taxon 500 24366 species 1 712991 0 [Eubacterium] rectale 1 39491 0 2713968 species 3 830 1 0 130 genus 43316 Butyrivibrio Butyrivibrio proteoclasticus species 21946 0 43305 1 Butyrivibrio hungatei 21240 species 185008 1 0 Blautia 1 0 3 572511 266 genus 231600 73260 no rank 1 2648079 0 Blautia sp. YL58 1796616 1 0 species 73260 species 158074 0 1322 1 Blautia hansenii genus 180026 1 2719313 0 [Clostridium] bolteae species 180026 208479 1 0 1 0 186806 5 11 family 22950 Eubacteriaceae Acetobacterium 0 1 2 33951 2 genus 2162 2160 species 33952 1 0 Acetobacterium woodii genus 20777 2 1730 1 0 1410 Eubacterium Eubacterium limosum 0 1736 1 19367 species Oscillospiraceae 25239 family 9 1 0 216572 3 Oscillibacter 25230 genus 51 459786 2 1 0 351091 1 0 species 25179 Oscillibacter valericigenes family 156144 41 31979 0 1 1100 Clostridiaceae Alkaliphilus 8 1 0 3 114627 2938 genus Alkaliphilus metalliredigens species 1605 0 1 208226 Alkaliphilus oremlandii species 1325 1 461876 0 Clostridium 144241 genus 1224 30 1485 1 0 Clostridium acetobutylicum species 2419 1 1488 0 Clostridium baratii 0 1561 1 species 4852 species 3650 0 1 1513 Clostridium tetani Clostridium saccharoperbutylacetonicum species 5242 1 36745 0 3352 species 1 217159 0 Clostridium carboxidivorans Clostridium ljungdahlii 1538 1 0 2359 species species 1606 0 84022 1 Clostridium aceticum Clostridium novyi 2315 species 0 1542 1 Clostridium sporogenes 1 1509 0 2094 species 1519 1 0 2873 species Clostridium tyrobutyricum species 15679 0 1 1491 Clostridium botulinum Clostridium scatologenes species 3272 0 1548 1 4061 species 0 169679 1 Clostridium saccharobutylicum Clostridium chauvoei 46867 1 0 2584 species 1493 1 0 4330 species Clostridium cellulovorans Clostridium beijerinckii 6303 species 0 1520 1 4651 species 1 1501 0 Clostridium pasteurianum Clostridium kluyveri species 4214 0 1534 1 0 1 84023 species 2389 Clostridium autoethanogenum 1 1502 0 5963 species Clostridium perfringens 2427 species 0 1 29341 Clostridium argentinense 2614128 2 0 no rank 36053 0 1 755731 species 3855 Clostridium sp. BNL1100 Clostridium sp. SY8519 1 1042156 0 species 32198 Clostridium cochlearium 1 1494 0 species 4502 1 1216932 0 species 2760 Clostridium bornimense species 1886 1 1497 0 Clostridium formicaceticum Clostridium taeniosporum 394958 1 0 2692 species Clostridium butyricum 0 1 1492 6205 species 1 238834 0 2284 species Clostridium estertheticum Mordavella 1 1981033 0 genus 318 49082 4 1 0 42 genus 3383 Candidatus Arthromitus 3341 no rank 3 2638829 0 Candidatus Arthromitus sp. SFB-mouse 1087 species 49118 1 0 Candidatus Arthromitus sp. SFB-mouse-NL 1508644 1 0 1054 species Candidatus Arthromitus sp. SFB-rat-Yit 0 1 1041504 1200 species Geosporobacter genus 4164 390805 2 0 1 52 4112 species 0 1 1424294 Geosporobacter ferrireducens 37 1 0 3 990719 28219 family Christensenellaceae Christensenella 28182 genus 952 1 0 2 990721 Christensenella massiliensis 1 1805714 0 species 27230 family 30509 29 186807 0 1 104 Peptococcaceae Dehalobacterium 1 0 51514 2 5 genus 2956 species 2951 0 51515 1 Dehalobacterium formicoaceticum genus 5178 0 1 4 56112 68 Dehalobacter 3391 no rank 2635733 2 0 1609 species 0 1147129 1 Dehalobacter sp. DCA species 1782 0 1 1131462 Dehalobacter sp. CF Dehalobacter restrictus 0 55583 1 1719 species 0 1 2282742 1028 genus Desulfotomaculum acetoxidans 58138 1 0 species 1028 genus 6904 1 0 5 36853 44 Desulfitobacterium Desulfitobacterium hafniense 0 1 49338 2803 species Desulfitobacterium metallireducens species 1029 0 142877 1 0 233055 1 species 1589 Desulfitobacterium dichloroeliminans 0 36854 1 1439 species Desulfitobacterium dehalogenans Thermincola 2 278993 0 1 1 genus 998 Thermincola potens 997 species 863643 1 0 genus 1532 0 1 2282740 1532 species 102134 1 0 Desulfotomaculum gibsoniae Syntrophobotulus 1605 genus 3 1 0 2 51196 1602 species 1 51197 0 Syntrophobotulus glycolicus 1052 genus 4 2 471826 1 0 Candidatus Desulforudis species 1048 471827 1 0 Candidatus Desulforudis audaxviator Desulfotomaculum genus 5237 0 1 1562 5 55 Desulfotomaculum ferrireducens 1 1833852 0 1182 species Desulfotomaculum nigrificans 1565 1 0 1026 species Desulfotomaculum ruminis species 1740 1564 1 0 1234 species 0 1 59610 Desulfotomaculum reducens genus 3915 79206 4 1 0 41 Desulfosporosinus 0 1563 1 species 1309 Desulfosporosinus orientis 1396 species 1 885581 0 Desulfosporosinus acidiphilus 1169 species 1 79209 0 Desulfosporosinus meridiei 3 485256 1 0 1 order 792 Natranaerobiales 0 2 485255 family 791 genus 791 2 375928 1 0 14 Natranaerobius 777 species 0 375929 1 Natranaerobius thermophilus Halanaerobiales 1 53433 11 1 0 4753 order Halanaerobiaceae 2756 family 4 6 972 0 1 Halanaerobium 2088 genus 23 3 2330 1 0 Halanaerobium praevalens 941 species 0 2331 1 Halanaerobium hydrogeniformans 1124 species 0 1 656519 Halothermothrix 664 genus 1 0 1 2 32636 Halothermothrix orenii 1 31909 0 663 species Halobacteroidaceae 1996 family 6 0 1 53434 4 Acetohalobium 1143 genus 1 1 0 28186 2 Acetohalobium arabaticum 28187 1 0 1142 species 42417 1 0 genus 847 Halobacteroides halobius 0 42422 1 847 species 3 2770089 0 1555 order 2770093 2 0 557 family 557 genus 3 0 1 291988 2 Thermosediminibacter 291990 1 0 species 554 Thermosediminibacter oceani 0 2770092 1 998 family 0 1 499228 genus 998 1 499229 0 species 998 Tepidanaerobacter acetatoxydans order 26015 36 68295 1 0 46 Thermoanaerobacterales 5 543372 3 0 1 1299 family Thermoanaerobacterales Family IV. Incertae Sedis 1294 genus 1 252965 2 1 0 Mahella Mahella australiensis 1 252966 0 1293 species 43 1 0 543371 13 11768 family Thermoanaerobacterales Family III. Incertae Sedis Caldicellulosiruptor 8360 genus 171 9 44000 1 0 species 979 1 52766 0 Caldicellulosiruptor lactoaceticus 1008 species 717609 1 0 Caldicellulosiruptor obsidiansis 413888 1 0 species 1017 Caldicellulosiruptor hydrothermalis species 1010 55205 1 0 Caldicellulosiruptor owensensis Caldicellulosiruptor kristjanssonii 0 52765 1 994 species Caldicellulosiruptor kronotskyensis species 978 1 413889 0 Caldicellulosiruptor saccharolyticus species 1090 0 44001 1 Caldicellulosiruptor bescii 0 31899 1 1113 species genus 3365 3 28895 1 0 9 Thermoanaerobacterium Thermoanaerobacterium xylanolyticum 29329 1 0 species 1246 0 1517 1 2110 species Thermoanaerobacterium thermosaccharolyticum 0 1 227387 family 282 282 genus 227388 1 0 1 184064 0 282 species Thermodesulfobium narugense Thermoanaerobacteraceae 36 0 1 18 186814 12620 family genus 977 0 249529 1 Caldanaerobacter subterraneus 977 species 0 1 911092 2 140458 0 1 7 genus 585 Thermacetogenium Thermacetogenium phaeum 85874 1 0 578 species 0 1 129957 702 genus Carboxydothermus hydrogenoformans 0 129958 1 702 species 8572 genus 261 1754 9 1 0 Thermoanaerobacter species 739 0 583357 1 Thermoanaerobacter mathranii 0 1 2325 species 977 Thermoanaerobacter kivui 2636821 2 0 no rank 2254 Thermoanaerobacter sp. X514 0 399726 1 1126 species Thermoanaerobacter sp. X513 573062 1 0 1128 species Thermoanaerobacter pseudethanolicus 496866 1 0 species 1178 0 46354 1 species 1046 Thermoanaerobacter wiegelii Thermoanaerobacter brockii 0 29323 1 1178 species 1 108150 0 species 939 Thermoanaerobacter italicus 1748 no rank 0 4 42857 4 1 0 44260 2 1082 genus Moorella 0 1525 1 species 1078 Moorella thermoacetica 42837 2 0 1 5 genus 666 Ammonifex 42838 1 0 661 species Ammonifex degensii no rank 1483 33974 2 0 Ndongobacter 1483 genus 25 0 1 1930845 2 Ndongobacter massiliensis 1 1871025 0 species 1458 no rank 894 1 84086 0 243899 1 0 894 species endosymbiont 'TC1' of Trimyema compressum 1305 class 14 1 0 1676648 5 Limnochordia Limnochordales order 1291 1 0 1676649 4 18 family 1273 1676650 3 1 0 9 Limnochordaceae Limnochorda 1264 genus 20 2 1676651 0 1 1244 species 1555112 1 0 Limnochorda pilosa Negativicutes 86 0 1 909932 31 93717 class 49325 order 2904 11 1843489 0 1 Veillonellales Veillonellaceae 2013 0 1 31977 10 46421 family 2 909928 0 1 3 genus 1771 Negativicoccus 0 1 1702287 1768 species Negativicoccus massiliensis genus 4199 0 1 2 39948 9 Dialister Dialister pneumosintes 39950 1 0 species 4190 27317 genus 35 29465 3 1 0 Veillonella Veillonella parvula 23387 species 1 29466 0 Veillonella rodentium 0 1 248315 species 3895 Megasphaera 906 2 1 0 883 genus 11121 1 907 0 10238 species Megasphaera elsdenii Selenomonadales 1 0 909929 14 56 order 23094 family 19926 1843491 9 0 1 338 Selenomonadaceae 16725 genus 229 0 1 6 970 Selenomonas 2637378 3 0 no rank 8312 Selenomonas sp. oral taxon 478 2728 species 712538 1 0 713030 1 0 species 3371 Selenomonas sp. oral taxon 136 1884263 1 0 2213 species Selenomonas sp. oral taxon 920 Selenomonas ruminantium 5084 species 971 1 0 Selenomonas sputigena 3100 species 0 1 69823 genus 2863 0 1 158846 2 1 Megamonas 2862 species 0 1 158847 Megamonas hypermegale family 3112 1843490 4 0 1 6 Sporomusaceae 3106 genus 10 0 1 365348 3 Pelosinus 1 2629460 0 no rank 1452 0 1 484770 species 1452 Pelosinus sp. UFO1 0 1 365349 species 1644 Pelosinus fermentans 21212 order 67 5 1843488 0 1 Acidaminococcales Acidaminococcaceae 21145 family 84 4 909930 0 1 Acidaminococcus 62 3 904 1 0 21061 genus Acidaminococcus fermentans 1 905 0 species 4151 species 16848 0 1 187327 Acidaminococcus intestini 11 526524 1 0 6 class 51333 Erysipelotrichia order 51327 1 0 10 526525 25 Erysipelotrichales family 51302 128827 9 0 1 226 Erysipelotrichaceae Erysipelothrix 4382 genus 156 1 0 3 1647 Erysipelothrix larvae 1909 species 1514105 1 0 Erysipelothrix rhusiopathiae species 2317 0 1648 1 2 191303 0 1 18 genus 9643 Turicibacter 0 2638206 1 9625 no rank Turicibacter sp. H121 species 9625 0 1 1712675 1 0 2 1729679 4 genus 5063 Faecalibaculum Faecalibaculum rodentium 5059 species 0 1702221 1 31988 no rank 0 1 544447 31988 species 1 1834207 0 Erysipelotrichaceae bacterium I46 824079 class 281 0 1 434 91061 Bacilli Lactobacillales 0 1 166 186826 6322 order 516560 no rank 869 0 263855 1 869 species 1993866 1 0 Lactobacillales bacterium Leuconostocaceae family 6947 18 81850 0 1 16 Oenococcus genus 552 1 0 2 46254 2 1 1247 0 species 550 Oenococcus oeni Leuconostoc 1 0 9 1243 37 genus 3880 1 136609 0 species 413 Leuconostoc kimchii 426 species 1 33964 0 Leuconostoc citreum 2685106 1 0 447 no rank Leuconostoc sp. C2 species 447 0 1 979982 Leuconostoc garlicum 227 species 0 1 255248 0 1 1245 997 species Leuconostoc mesenteroides Leuconostoc gelidum species 657 0 1 1244 Leuconostoc carnosum 393 species 0 1252 1 species 283 0 1246 1 Leuconostoc lactis 24 46255 6 1 0 2499 genus Weissella 0 1 759620 species 394 Weissella ceti Weissella koreensis 165096 1 0 species 466 Weissella cibaria 137591 1 0 705 species Weissella paramesenteroides 0 1 1249 species 445 Weissella jogaejeotgali species 465 0 1 1631871 7580 family 26 11 186828 0 1 Carnobacteriaceae Jeotgalibaca 13 1470540 3 0 1 1721 genus no rank 1186 1 2621505 0 Jeotgalibaca sp. PTS2502 1186 species 1903686 1 0 522 species 0 708126 1 Jeotgalibaca dankookensis 1461 genus 5 0 1 191769 2 Marinilactibacillus 1 2632303 0 no rank 1456 0 1911586 1 1456 species Marinilactibacillus sp. 15R 20 5 2747 0 1 4372 genus Carnobacterium Carnobacterium maltaromaticum species 1303 1 2751 0 1 147709 0 975 species Carnobacterium inhibens 257487 2 0 2074 no rank Carnobacterium sp. 17-4 1101 species 0 208596 1 Carnobacterium sp. CP1 1 1564681 0 973 species 506 33958 58 1 0 60024 family Lactobacillaceae 0 2767879 6 4639 genus Lactobacillus allii 780 species 0 1 1847728 1602 1 0 species 830 Lactobacillus alimentarius Lactobacillus farciminis 0 1 1612 851 species 828 species 1007676 1 0 Lactobacillus ginsenosidimutans species 678 1 1074467 0 Lactobacillus heilongjiangensis Lactobacillus crustorum species 672 0 1 392416 genus 646 0 1 2767892 Lactobacillus paracollinoides 646 species 240427 1 0 genus 962 2 2767881 0 Lactobacillus lindneri species 492 53444 1 0 1 1625 0 species 470 Lactobacillus sanfranciscensis 2 2767885 0 genus 1690 0 1 1599 889 species Lactobacillus sakei Lactobacillus curvatus 0 1 28038 801 species 4056 1578 16 0 1 22321 genus Lactobacillus Lactobacillus amylovorus 0 1 1604 species 4971 Lactobacillus johnsonii species 3209 0 33959 1 0 267818 1 species 571 Lactobacillus kefiranofaciens no rank 1601 2620435 4 0 Lactobacillus sp. wkB8 1 1545702 0 391 species Lactobacillus sp. CBA3605 454 species 2099788 1 0 species 274 0 1 2108362 Lactobacillus sp. D1501 482 species 0 1 2099789 Lactobacillus sp. CBA3606 Lactobacillus amylolyticus species 446 0 83683 1 0 1 1587 1196 species Lactobacillus helveticus species 559 1 109790 0 Lactobacillus jensenii Lactobacillus acidophilus 762 species 0 1 1579 species 481 0 1600 1 Lactobacillus acetotolerans species 668 0 1 52242 Lactobacillus gallinarum species 2289 1584 1 0 Lactobacillus delbrueckii Lactobacillus gasseri 1512 species 1596 1 0 2 2767889 0 1340 genus 0 1610 1 species 836 Lactobacillus coryniformis 504 species 375175 1 0 Lactobacillus backii 3 2759736 0 3509 genus Lactobacillus paracasei species 1155 0 1597 1 Lactobacillus rhamnosus 0 1 47715 845 species 1582 1 0 species 1509 Lactobacillus casei genus 482 0 2767890 1 0 1193095 1 species 482 Lactobacillus hokkaidonensis 2767842 3 0 genus 2053 1 60520 0 327 species Lactobacillus paraplantarum species 1167 1590 1 0 Lactobacillus plantarum Lactobacillus pentosus species 559 1 1589 0 Pediococcus 3279 genus 32 0 1 1253 6 species group 854 0 1 1670797 1 1254 0 854 species Pediococcus acidilactici Pediococcus inopinatus 436 species 114090 1 0 Pediococcus pentosaceus 1255 1 0 species 882 Pediococcus claussenii 1 187452 0 species 588 0 51663 1 487 species Pediococcus damnosus genus 1263 2767886 3 0 Lactobacillus zymae 1 267363 0 346 species Lactobacillus koreensis 637971 1 0 species 250 Lactobacillus brevis 0 1 1580 species 667 0 1 2767877 genus 392 1 148814 0 species 392 Lactobacillus kunkeei genus 3033 0 3 2742598 species 770 0 1613 1 Lactobacillus fermentum Lactobacillus mucosae 1 97478 0 species 1050 Lactobacillus reuteri 1 1598 0 1213 species genus 10521 0 2767887 4 Lactobacillus ruminis species 6218 0 1 1623 species 854 0 1 1601 Lactobacillus agilis Lactobacillus salivarius 2649 species 1 1624 0 species 800 0 89059 1 Lactobacillus acidipiscis genus 1602 0 3 2767893 species 567 1581 1 0 Lactobacillus buchneri 0 152331 1 species 465 Lactobacillus parabuchneri 570 species 1 1138822 0 Lactobacillus curieae genus 1786 1 2767876 0 Lactobacillus amylophilus 1786 species 1 1603 0 7 8 186827 1 0 5142 family Aerococcaceae 5135 genus 390 1375 7 0 1 Aerococcus 1 51665 0 species 865 Aerococcus urinaeequi Aerococcus viridans species 601 1377 1 0 834 species 1376 1 0 Aerococcus urinae species 893 1 87541 0 Aerococcus christensenii 128944 1 0 698 species Aerococcus urinaehominis Aerococcus sanguinicola 0 119206 1 species 854 Streptococcaceae family 374149 1300 49 1 0 7456 Lactococcus 1357 5 1 0 14 genus 6589 Lactococcus garvieae 0 1363 1 species 1107 1358 1 0 species 4193 Lactococcus lactis Lactococcus raffinolactis 0 1366 1 species 560 715 species 0 1364 1 Lactococcus piscium Streptococcus 8778 1 0 1301 43 360104 genus species 5479 0 197614 1 Streptococcus pasteurianus Streptococcus merionis 774 species 0 400065 1 0 1 45634 species 1938 Streptococcus cristatus Streptococcus lutetiensis species 5730 150055 1 0 Streptococcus salivarius species 91863 1304 1 0 Streptococcus marmotae 822 species 1825069 1 0 0 1307 1 32915 species Streptococcus suis Streptococcus halotolerans 1814128 1 0 species 703 5032 species 0 28037 1 Streptococcus mitis Streptococcus pneumoniae 0 1313 1 species 3470 2 119603 0 species group 2874 Streptococcus dysgalactiae 1 1334 0 species 1048 0 1 1336 species 1826 Streptococcus equi 1 1314 0 species 2365 Streptococcus pyogenes Streptococcus himalayensis species 539 0 1888195 1 1999 species 0 1346 1 Streptococcus iniae Streptococcus parauberis 1348 1 0 species 1173 Streptococcus pantholopis 0 1 1811193 species 991 4445 species 1308 1 0 Streptococcus thermophilus 704 species 82348 1 0 Streptococcus pluranimalium species 2798 1302 1 0 Streptococcus gordonii Streptococcus pseudopneumoniae species 1308 0 1 257758 3 671232 0 species group 44785 2133 species 1 1338 0 Streptococcus intermedius 0 76860 1 species 16140 Streptococcus constellatus species 26512 0 1 1328 Streptococcus anginosus Streptococcus acidominimus species 3851 1326 1 0 37290 species 0 1 1318 Streptococcus parasanguinis 13140 species 1 1335 0 Streptococcus equinus Streptococcus oralis species 3787 1 1303 0 950 species 1 59310 0 Streptococcus macedonicus species 6461 0 1 102684 Streptococcus infantarius 41458 no rank 7 2608887 0 Streptococcus sp. oral taxon 431 1 712633 0 species 1912 Streptococcus sp. I-P16 3517 species 1 1156433 0 3166 species 1759399 1 0 Streptococcus sp. A12 Streptococcus sp. FDAARGOS_192 0 1 1839799 27565 species Streptococcus sp. 'group B' species 849 0 1 1319 3434 species 1156431 1 0 Streptococcus sp. I-G2 Streptococcus sp. NPS 308 0 1902136 1 species 1015 Streptococcus mutans 1309 1 0 958 species Streptococcus agalactiae species 25832 0 1 1311 Streptococcus gallolyticus species 2470 1 315405 0 Streptococcus uberis 1349 1 0 species 754 Streptococcus sanguinis 0 1 1305 1668 species 42 81852 20 0 1 55527 family Enterococcaceae Vagococcus 2253 genus 10 0 1 2737 3 species 988 0 1 633807 Vagococcus penaei Vagococcus teuberi species 1255 0 519472 1 Melissococcus 0 1 33969 2 1 genus 948 species 947 1 33970 0 Melissococcus plutonius 50845 genus 5607 0 1 1350 12 Enterococcus Enterococcus wangshanyuanii 1085 species 2005703 1 0 Enterococcus hirae 1402 species 1354 1 0 0 1 53345 species 1584 Enterococcus durans 0 3 2608891 no rank 3017 1 2060306 0 900 species Enterococcus sp. FDAARGOS_163 Enterococcus sp. CR-Ec1 1044 species 2057791 1 0 Enterococcus sp. FDAARGOS_375 0 2060307 1 species 1073 Enterococcus casseliflavus 0 1 37734 705 species Enterococcus faecium 0 1 1352 species 26733 species 1273 1 53346 0 Enterococcus mundtii Enterococcus faecalis 0 1351 1 species 8471 968 species 0 1 417368 Enterococcus thailandicus genus 1439 2 51668 0 1 6 Tetragenococcus Tetragenococcus halophilus species 1433 51669 1 0 order 307238 267 1385 1 0 575 Bacillales 539002 9 0 5661 no rank 1853 no rank 539738 2 0 Gemella 1853 genus 1 1 0 1378 2 2624949 1 0 1852 no rank Gemella sp. oral taxon 928 0 1785995 1 1852 species 3808 no rank 539742 7 0 genus 3808 0 1 7 33986 101 Exiguobacterium Exiguobacterium sibiricum 744 species 1 332410 0 132920 1 0 600 species Exiguobacterium antarcticum no rank 2363 0 4 2644629 Exiguobacterium sp. ZWU0009 species 619 0 1 1224749 0 1399115 1 species 545 Exiguobacterium sp. MH3 618 species 1 360911 0 Exiguobacterium sp. AT1b Exiguobacterium sp. U13-1 0 1 1849031 581 species Sporolactobacillaceae 1264 family 15 186821 2 0 1 1 663587 0 no rank 1249 species 1249 85683 1 0 [Bacillus] selenitireducens 186818 26 0 1 42 family 19620 Planococcaceae 1649 2 0 1 4 genus 1049 Kurthia 1 2644826 0 no rank 1045 1045 species 1 1750719 0 Kurthia sp. 11kri321 Planococcus 98 1 0 12 1372 8486 genus Planococcus halocryophilus 0 1215089 1 530 species Planococcus rifietoensis species 964 1 200991 0 Planococcus donghaensis 414778 1 0 624 species Planococcus sp. L10.15 species 534 1302659 1 0 810 species 1 1038856 0 Planococcus plakortidis species 1674 192421 1 0 Planococcus maritimus Planococcus antarcticus 161360 1 0 659 species Planococcus faecalis 616 species 1598147 1 0 no rank 1354 2 2662419 0 Planococcus sp. PAMC 21323 383 species 0 1 1526927 Planococcus sp. MB-3u-03 1 2058136 0 971 species Planococcus kocurii species 623 1374 1 0 8 2 157226 1 0 1500 genus Jeotgalibacillus species 1492 0 1508404 1 Jeotgalibacillus malaysiensis 648802 1 0 940 genus Rummeliibacillus stabekisii species 940 0 1 241244 Sporosarcina 22 1 0 1569 5 5002 genus Sporosarcina ureae species 2395 1 1571 0 1 1476 0 932 species Sporosarcina psychrophila 1653 no rank 2647733 2 0 Sporosarcina sp. P33 1 1930764 0 species 852 species 801 1930546 1 0 Sporosarcina sp. P37 Solibacillus 13 648800 3 1 0 2601 genus 76853 1 0 species 1666 Solibacillus silvestris 922 no rank 2637870 1 0 Solibacillus sp. R5-41 species 922 0 2048654 1 Paenibacillaceae family 83716 1 0 186822 46 196 Thermobacillus genus 2294 2 76632 0 1 3 Thermobacillus composti 0 377615 1 species 2291 Brevibacillus genus 4584 55080 4 1 0 39 1840 species 0 1 1465 Brevibacillus laterosporus 1654 species 1 1393 0 Brevibacillus brevis 0 1 54913 1051 species Brevibacillus formosus 0 3 85151 no rank 2673 2673 genus 22 3 55079 0 1 Aneurinibacillus no rank 1255 0 2642329 1 Aneurinibacillus sp. XH2 1255 species 1450761 1 0 Aneurinibacillus soli 1396 species 1500254 1 0 73969 genus 549 36 44249 0 1 Paenibacillus Paenibacillus kribbensis 0 1 172713 species 1479 species 1550 1 528191 0 Paenibacillus xylanexedens species 2093 0 1870820 1 Paenibacillus ihbetae Paenibacillus odorifer 1457 species 189426 1 0 Paenibacillus sabinae 0 365617 1 species 1771 Paenibacillus graminis species 2089 1 189425 0 Paenibacillus yonginensis 0 1 1462996 species 2163 1178515 1 0 species 940 Paenibacillus swuensis species 3089 1 160799 0 Paenibacillus borealis species 1545 0 1 1464 Paenibacillus larvae Paenibacillus peoriae 0 1 59893 1392 species 1 414771 0 2737 species Paenibacillus donghaensis Paenibacillus durus 0 1 44251 3147 species Paenibacillus bovis species 2250 1 1616788 0 no rank 26176 0 185978 13 Paenibacillus sp. FSL R7-0273 1 1536772 0 species 3199 1658 species 1 1695218 0 Paenibacillus sp. 32O-W Paenibacillus sp. Y412MC10 1589 species 481743 1 0 Paenibacillus sp. JDR-2 1823 species 324057 1 0 Paenibacillus sp. FSL H7-0737 1536775 1 0 1608 species 1576 species 0 1536770 1 Paenibacillus sp. FSL R5-0345 Paenibacillus sp. lzh-N1 species 1226 2069255 1 0 832 species 0 1 1566358 Paenibacillus sp. IHBB 10380 0 1 1536769 species 2991 Paenibacillus sp. FSL P4-0081 2914 species 0 1536771 1 Paenibacillus sp. FSL R5-0912 Paenibacillus sp. FSL R7-0331 2971 species 1 1536773 0 Paenibacillus sp. BIHB4019 0 1870819 1 1392 species 0 1 1536774 2397 species Paenibacillus sp. FSL H7-0357 Paenibacillus crassostreae species 1316 0 1 1763538 species group 2335 2044880 1 0 species 2335 483937 1 0 Paenibacillus riograndensis 2820 species 1 169760 0 Paenibacillus stellifer Paenibacillus mucilaginosus 61624 1 0 species 3694 Paenibacillus terrae 1415 species 1 159743 0 0 1126833 1 1704 species Paenibacillus beijingensis Paenibacillus naphthalenovorans 0 162209 1 1535 species 0 1406 1 4723 species Paenibacillus polymyxa Listeriaceae 43 186820 9 0 1 9644 family 1066 genus 1 2 2755 0 1 Brochothrix 1065 species 0 2756 1 Brochothrix thermosphacta Listeria 8535 genus 44 6 1637 1 0 0 1 1640 species 1047 Listeria seeligeri 1643 1 0 1257 species Listeria welshimeri species 1569 0 1638 1 Listeria ivanovii Listeria innocua 973 species 1 1642 0 Listeria monocytogenes 0 1 1639 3645 species Alicyclobacillaceae family 5146 1 0 186823 9 14 Tumebacillus 2538 genus 23 432330 3 0 1 1466 species 0 1903704 1 Tumebacillus avium 1049 species 0 1 1214604 Tumebacillus algifaecis 1495 genus 23 29330 2 0 1 Alicyclobacillus 0 405212 1 species 1472 Alicyclobacillus acidocaldarius 3 1129704 1 0 20 genus 1099 Kyrpidia species 500 2055160 1 0 Kyrpidia sp. EA-1 Kyrpidia tusciae species 579 0 1 33943 5 186824 4 0 1 1941 family Thermoactinomycetaceae 1926 genus 90 2 1677050 0 1 Novibacillus 0 1 1471761 1836 species Novibacillus thermophilus Laceyella 10 genus 1 292635 0 Bacillaceae 136284 family 605 119 186817 0 1 5 2675234 0 genus 5657 species 846 0 86665 1 Bacillus halodurans 79885 1 0 species 1094 Bacillus pseudofirmus species 994 0 1 300825 Bacillus lehensis species 1040 0 199441 1 Bacillus krulwichiae 1 79880 0 1683 species Bacillus clausii genus 2498 2 2675230 0 species 1476 0 665099 1 Bacillus oceanisediminis 859143 1 0 species 1022 Bacillus kochii genus 1099 2 459532 1 0 3 Terribacillus Terribacillus aidingensis 0 1 586416 1096 species 0 1055323 1 genus 1106 Aeribacillus pallidus 1106 species 1 33936 0 Fictibacillus 1 0 3 1329200 8 genus 2470 0 1 255247 1156 species Fictibacillus arsenicus 1306 species 1 1221500 0 Fictibacillus phosphorivorans genus 86233 0 1 1386 58 5999 Bacillus Bacillus glycinifermentans 1518 species 1664069 1 0 1 79881 0 species 155 Bacillus gibsonii species 1834 561879 1 0 Bacillus safensis 1184 species 324767 1 0 Bacillus infantis 11136 no rank 19 185979 0 Bacillus sp. 1s-1 937 species 2026248 1 0 species 937 0 1856406 1 Bacillus sp. H15-1 species 313 0 1 1941347 Bacillus sp. 275 1 666686 0 species 1168 Bacillus sp. 1NLA3E 1025 species 1 1565991 0 Bacillus sp. X1(2014) 1 1574141 0 species 244 Bacillus sp. YP1 0 98228 1 species 797 Bacillus sp. OxB-1 1 1570330 0 species 161 Bacillus sp. BH072 Bacillus sp. FJAT-14266 703 species 1837130 1 0 1 1827146 0 1188 species Bacillus sp. IHB B 7164 Bacillus sp. (in: Bacteria) 0 1 1409 141 species Bacillus sp. Lzh-5 species 137 2049935 1 0 species 358 0 1 1446792 Bacillus sp. Pc3 Bacillus sp. LM 4-2 species 196 1628753 1 0 Bacillus sp. SJ-10 species 407 1 563169 0 1 1127744 0 species 451 Bacillus sp. JS 1 1774743 0 species 668 Bacillus sp. SDLI1 Bacillus sp. MD-5 species 395 2009331 1 0 1 756828 0 species 910 Bacillus sp. WP8 0 1471 1 species 1056 Bacillus methanolicus Bacillus pumilus species 4048 1 1408 0 Bacillus cellulosilyticus 931 species 0 1413 1 0 1 1404 species 2771 Bacillus megaterium 26986 species group 0 86661 10 1396 1 0 8418 species Bacillus cereus Bacillus anthracis species 848 0 1392 1 2750818 3 0 3214 no rank species 1234 1839798 1 0 Bacillus sp. FDAARGOS_235 Bacillus sp. HBCD-sjtu 2053832 1 0 species 1099 species 881 1892404 1 0 Bacillus sp. ABP14 Bacillus mycoides species 3735 0 1 1405 species 7942 1428 1 0 Bacillus thuringiensis species 932 0 1 658666 Bacillus bombysepticus species 1143 580165 1 0 Bacillus cytotoxicus Bacillus toyonensis 155322 1 0 species 754 2651 species 0 1398 1 Bacillus coagulans 835 species 0 1 86664 Bacillus flexus 1 412384 0 1060 species Bacillus aryabhattai Bacillus xiamenensis 1178537 1 0 species 939 15249 species group 653685 9 0 Bacillus paralicheniformis 1327 species 0 1648923 1 species 5705 0 1 1423 Bacillus subtilis Bacillus vallismortis 233 species 0 72361 1 0 1938374 3 species subgroup 4229 Bacillus siamensis 0 1 659243 678 species Bacillus amyloliquefaciens 1886 species 1390 1 0 Bacillus velezensis species 1665 492670 1 0 1 119858 0 1238 species Bacillus sonorensis 1278 species 1 1402 0 Bacillus licheniformis Bacillus atrophaeus species 1239 1 1452 0 1 79883 0 1124 species Bacillus horikoshii 135735 1 0 1348 species Bacillus endophyticus Bacillus cohnii species 1132 33932 1 0 species group 1076 1792192 1 0 1076 species 1 293387 0 Bacillus altitudinis Bacillus beveridgei 0 632773 1 species 1057 Bacillus smithii 822 species 1479 1 0 Bacillus weihaiensis 1 1547283 0 species 1322 29331 1 0 genus 1515 0 1 1449 species 1515 Amphibacillus xylanus Parageobacillus 1 0 1906945 2 3 genus 1186 Parageobacillus thermoglucosidasius 1183 species 1 1426 0 genus 4534 6 150247 1 0 12 Anoxybacillus 809 species 0 1 294699 Anoxybacillus amylolyticus Anoxybacillus gonensis 0 198467 1 831 species 2639704 2 0 no rank 1533 Anoxybacillus sp. B7M1 810 species 0 1490057 1 species 723 1 1490052 0 Anoxybacillus sp. B2M1 0 1 33934 1349 species Anoxybacillus flavithermus Lentibacillus genus 840 0 1 2 175304 4 836 species 1 1472767 0 Lentibacillus amyloliquefaciens 7 84406 1 0 20 genus 5761 Virgibacillus 1050 species 0 163877 1 Virgibacillus necropolis Virgibacillus phasianinus 1 2017483 0 species 823 species 862 0 1 1473 Virgibacillus pantothenticus 2620237 2 0 no rank 1983 species 1070 0 1911587 1 Virgibacillus sp. 6R 0 403957 1 913 species Virgibacillus sp. SK37 species 1023 0 1 1482 Virgibacillus halodenitrificans 1698 genus 5 0 1 2 182709 Oceanobacillus Oceanobacillus iheyensis 0 1 182710 1693 species 129337 15 0 1 566 genus 8871 Geobacillus 0 4 1505648 species group 2537 Geobacillus thermoleovorans 33941 1 0 1082 species species 475 1 33938 0 Geobacillus thermocatenulatus 730 species 169283 1 0 Geobacillus lituanicus 1462 1 0 250 species Geobacillus kaustophilus Geobacillus thermodenitrificans species 961 0 33940 1 6 2642459 0 no rank 2839 1 691437 0 350 species Geobacillus sp. C56-T3 Geobacillus sp. GHH01 1233873 1 0 species 335 1 550542 0 277 species Geobacillus sp. Y412MC52 Geobacillus sp. Y412MC61 263 species 0 544556 1 Geobacillus sp. Y4.1MC1 963 species 581103 1 0 species 651 471223 1 0 Geobacillus sp. WCH70 937 species 1 1422 0 Geobacillus stearothermophilus Geobacillus subterraneus 597 species 0 129338 1 Geobacillus genomosp. 3 434 species 1 1921421 0 Lysinibacillus 400634 5 1 0 81 genus 6339 Lysinibacillus varians 1145276 1 0 species 1012 1052 no rank 0 2636778 1 Lysinibacillus sp. YS11 species 1052 2072025 1 0 0 1 1421 2844 species Lysinibacillus sphaericus Lysinibacillus fusiformis 1350 species 28031 1 0 Halobacillus 3 45667 1 0 2 genus 2138 Halobacillus halophilus 1069 species 1570 1 0 species 1067 0 402384 1 Halobacillus mangrovi Salimicrobium 1 0 351195 2 1 genus 715 Salimicrobium jeotgali 0 1230341 1 species 714 0 2675229 2 genus 3019 Bacillus muralis 1100 species 0 264697 1 0 1 1478 1919 species Bacillus simplex Staphylococcaceae family 43387 42 90964 0 1 4292 2 2005363 0 1 3 genus 659 Auricoccucs Auricoccus indicus 0 1849491 1 species 656 Salinicoccus 1218 genus 6 2 45669 0 1 species 1212 1 407035 0 Salinicoccus halodurans 1472 1 0 1279 33 33327 genus Staphylococcus Staphylococcus felis 752 species 1 46127 0 0 1 70258 627 species Staphylococcus piscifermentans species 899 0 61015 1 Staphylococcus succinus 1 985002 0 828 species Staphylococcus argenteus species 908 1286 1 0 Staphylococcus simulans Staphylococcus cohnii species 1065 0 29382 1 no rank 595 0 91994 1 species 595 1 1715860 0 Staphylococcus sp. AntiMn-1 Staphylococcus agnetis species 596 985762 1 0 Staphylococcus lutrae 552 species 1 155085 0 Staphylococcus equorum 0 1 246432 species 767 Staphylococcus saprophyticus species 800 0 29385 1 species 894 1295 1 0 Staphylococcus schleiferi Staphylococcus epidermidis 0 1 1282 species 1367 Staphylococcus hominis species 813 1 1290 0 Staphylococcus condimenti species 1033 1 70255 0 Staphylococcus aureus 4434 species 0 1 1280 0 1 1296 species 971 Staphylococcus sciuri Staphylococcus muscae species 417 0 1294 1 Staphylococcus simiae 0 1 308354 924 species 0 1 28035 740 species Staphylococcus lugdunensis species 861 0 1281 1 Staphylococcus carnosus 724 species 0 1 29388 Staphylococcus capitis 1 29384 0 638 species Staphylococcus kloosii Staphylococcus warneri 1292 1 0 species 875 1284 1 0 species 576 Staphylococcus hyicus Staphylococcus pasteuri 1737 species 45972 1 0 species 607 1 170573 0 Staphylococcus pettenkoferi 839 species 0 643214 1 Staphylococcus stepanovicii Staphylococcus nepalensis 214473 1 0 837 species Staphylococcus xylosus 1 1288 0 species 1434 Staphylococcus pseudintermedius species 1988 283734 1 0 0 1 1283 757 species Staphylococcus haemolyticus 3891 genus 11 4 69965 0 1 Macrococcus Macrococcus canis 1855823 1 0 species 1172 Macrococcus caseolyticus 1843 species 0 69966 1 0 1 2619255 865 no rank 865 species 0 1898474 1 Macrococcus sp. IME1552 Tissierellia 20920 class 9 19 1737404 0 1 1737407 2 0 917 no rank 26 1582879 2 0 1 917 genus Ezakiella 891 species 0 1 1852374 Ezakiella massiliensis 19994 order 1148 1 0 1737405 16 Tissierellales Gottschalkiaceae family 1520 3 2042895 1 0 8 4 2 1505664 1 0 1512 genus Gottschalkia species 1508 0 1 1556 Gottschalkia acidurici 1 0 12 1570339 3692 family 17326 Peptoniphilaceae Finegoldia 2 150022 0 1 7 genus 2124 Finegoldia magna 2117 species 1 1260 0 5029 genus 1 1 0 2 1161127 Murdochiella Murdochiella vaginalis 1 1852373 0 5028 species Parvimonas 2 543311 1 0 33 genus 2158 0 33033 1 2125 species Parvimonas micra genus 2271 2 162289 1 0 6 Peptoniphilus no rank 2265 2637196 1 0 species 2265 0 1 1912856 Peptoniphilus sp. ING2-D1G 4 1 0 3 165779 2052 genus Anaerococcus Anaerococcus prevotii 33034 1 0 1232 species Anaerococcus mediterraneensis 816 species 1870984 1 0 clade 46137 1798711 152 0 46137 phylum 20 1117 152 0 1 Cyanobacteria 12 1 0 307596 6 1766 class Gloeobacteria Gloeobacterales order 1754 1 0 5 307595 30 Gloeobacteraceae family 1724 1 0 4 1890422 15 21 0 1 33071 3 1709 genus Gloeobacter Gloeobacter kilaueensis 1416614 1 0 646 species species 1042 33072 1 0 Gloeobacter violaceus 218 1 0 1890424 56 19793 order Synechococcales 1 0 1213 5 2 family 2155 Prochloraceae Prochlorococcus 14 0 1 4 1218 2153 genus 448 no rank 0 2 2627481 Prochlorococcus sp. MIT 0604 species 265 1 1501268 0 0 1 1501269 183 species Prochlorococcus sp. MIT 0801 0 1 1219 species 1691 Prochlorococcus marinus Leptolyngbyaceae 26 6 1890438 1 0 2301 family 2275 genus 10 0 1 5 47251 Leptolyngbya 1605 no rank 0 3 2650499 Leptolyngbya sp. PCC 7376 333 species 0 1 111781 Leptolyngbya sp. O-77 species 912 1080068 1 0 360 species 1752064 1 0 Leptolyngbya sp. NIES-3755 Leptolyngbya boryana 1184 1 0 species 660 1 1 0 5 1890428 981 family Merismopediaceae genus 980 4 1142 1 0 37 Synechocystis 2640012 3 0 no rank 943 Synechocystis sp. IPPAS B-1465 251 species 2116702 1 0 Synechocystis sp. PCC 6714 440 species 1 1147 0 Synechocystis sp. PCC 6803 252 species 1148 1 0 0 2 1890436 family 240 2 1152 1 0 19 genus 240 Pseudanabaena 2593292 1 0 no rank 221 1 82654 0 species 221 Pseudanabaena sp. PCC 7367 1890426 33 0 1 78 family 13113 Synechococcaceae 214 genus 0 146785 1 Thermosynechococcus elongatus 214 species 1 146786 0 184 1129 26 0 1 9386 genus Synechococcus 298 species 1 33070 0 Synechococcus lividus 8524 no rank 0 2626047 23 Synechococcus sp. PCC 7502 species 317 1173263 1 0 Synechococcus sp. NIES-970 176 species 1 1827144 0 0 1350461 1 424 species Synechococcus sp. UTEX 2973 442 species 0 1 585425 Synechococcus sp. KORDI-52 0 1 84588 446 species Synechococcus sp. WH 8102 Synechococcus sp. PCC 6312 species 193 0 1 195253 Synechococcus sp. PCC 73109 species 209 1 374982 0 Synechococcus sp. CC9311 184 species 64471 1 0 Synechococcus sp. KORDI-49 species 450 0 1 585423 Synechococcus sp. KORDI-100 species 373 1 1280380 0 species 267 374981 1 0 Synechococcus sp. PCC 7003 species 276 32049 1 0 Synechococcus sp. PCC 7002 Synechococcus sp. SynAce01 398 species 0 1916956 1 Synechococcus sp. WH 7803 414 species 1 32051 0 species 213 1 195248 0 Synechococcus sp. PCC 8807 Synechococcus sp. PCC 7117 0 1 195498 187 species Synechococcus sp. CC9902 species 149 316279 1 0 1 316278 0 629 species Synechococcus sp. RCC307 Synechococcus sp. CC9605 species 588 0 110662 1 Synechococcus sp. WH 8109 0 1 166314 species 499 Synechococcus sp. JA-3-3Ab species 751 0 1 321327 546 species 0 1 321332 Synechococcus sp. JA-2-3B'a(2-13) 29410 1 0 species 393 Synechococcus sp. WH 8103 0 1 32046 species 380 Synechococcus elongatus Dactylococcopsis 295 genus 9 1 0 13034 2 species 286 292566 1 0 Dactylococcopsis salina 3140 genus 61 3 167375 1 0 Cyanobium species 1477 0 59930 1 Cyanobium gracile 2627006 1 0 1602 no rank species 1602 0 1851505 1 Cyanobium sp. NIES-981 0 2 2303730 family 489 170610 2 1 0 2 genus 489 Halomicronema 0 1209493 1 487 species Halomicronema hongdechloris 296 family 1890429 2 0 Acaryochloris 296 genus 2 1 0 155977 2 Acaryochloris marina 294 species 155978 1 0 1890505 3 0 529 order Chroococcidiopsidaceae 2 0 1 1890528 3 529 family Chroococcidiopsis genus 527 1 0 54298 2 10 Chroococcidiopsis thermalis 0 54299 1 517 species 236 no rank 0 1 1983111 1 718217 0 species 236 cyanobacterium endosymbiont of Epithemia turgida Nostocales 11524 order 14 0 1 1161 33 1219117 1 0 no rank 459 0 1940762 1 459 species Nostocales cyanobacterium HT-58-2 32 0 1 1162 17 6328 family Nostocaceae 707 genus 0 264688 2 Trichormus azollae 0 1 1164 307 species Trichormus variabilis 0 1 264691 400 species Anabaena 5 4 1163 1 0 1674 genus 0 1 1165 species 555 Anabaena cylindrica 0 2 2619674 no rank 1114 46234 1 0 species 580 Anabaena sp. 90 0 1647413 1 534 species Anabaena sp. WA102 10 1177 0 1 30 genus 3915 Nostoc Nostoc flagelliforme 1306274 1 0 species 722 0 2593658 7 2618 no rank Nostoc sp. PCC 7120 1 103690 0 species 417 species 353 0 1 1869241 Nostoc sp. CENA543 231 species 0 317936 1 Nostoc sp. PCC 7107 0 28072 1 313 species Nostoc sp. PCC 7524 1 1751286 0 498 species Nostoc sp. NIES-3756 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 462 species 0 1261031 1 344 species 0 1618022 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 545 species 1 272131 0 Nostoc punctiforme 3421 family 0 8 2661849 0 1 1186 8 18 genus 3421 Calothrix 0 6 2619626 2951 no rank Calothrix sp. NIES-4101 species 566 1 2005461 0 Calothrix sp. NIES-4071 775 species 0 2005469 1 Calothrix sp. NIES-2098 1954171 1 0 species 530 403 species 0 1 1337936 Calothrix sp. 336/3 Calothrix sp. NIES-3974 species 325 1 2005462 0 Calothrix sp. PCC 7507 352 species 99598 1 0 species 452 0 32054 1 Calothrix parietina 336 family 21 0 1 3 1892263 Hapalosiphonaceae Fischerella genus 315 1190 2 0 1 1 no rank 314 494603 1 0 Fischerella sp. NIES-3754 species 314 0 1752063 1 Rivulariaceae 966 family 6 3 1185 0 1 Rivularia 0 1 2 373984 8 genus 960 952 no rank 2676603 1 0 1 373994 0 952 species Rivularia sp. PCC 7116 subclass 10877 1301283 44 0 Chroococcales 4 24 1118 1 0 6712 order Aphanothecaceae 3 9 1890450 1 0 2595 family 766 genus 2546365 2 0 766 species 2 2546366 0 strain 406 41431 1 0 Cyanothece sp. PCC 8801 Cyanothece sp. PCC 8802 395962 1 0 360 strain 1453359 1 0 220 genus 0 713887 1 species 220 Candidatus Atelocyanobacterium thalassa 261 no rank 2 92682 0 261 genus 11 1 0 2 76023 Halothece 1 2632878 0 no rank 250 0 65093 1 250 species Halothece sp. PCC 7418 genus 355 263510 1 0 0 2546360 1 355 species 0 43989 1 strain 355 Cyanothece sp. ATCC 51142 2 28070 0 990 genus 2546359 1 0 species 415 1 497965 0 415 strain Cyanothece sp. PCC 7822 575 species 1 2546356 0 0 1 65393 575 strain Cyanothece sp. PCC 7424 1932 family 5 1890464 7 0 1 Chroococcaceae 0 1 3 669357 18 genus 1315 Geminocystis 1297 no rank 0 2625037 2 species 814 0 1615909 1 Geminocystis sp. NIES-3708 483 species 0 1 1617448 Geminocystis sp. NIES-3709 0 268175 1 genus 337 0 1 2648896 no rank 337 Chondrocystis sp. NIES-4102 2005460 1 0 species 337 Gloeocapsa genus 275 0 1 2 102231 9 no rank 266 0 2623012 1 Gloeocapsa sp. PCC 7428 species 266 1 1173026 0 Cyanobacteriaceae 1 1890452 3 1 0 949 family Cyanobacterium 948 genus 1 102234 2 0 1 1 379064 0 947 species Cyanobacterium aponinum Microcystaceae 7 4 1890449 1 0 1232 family 3 1125 0 1 14 genus 1225 Microcystis species 765 0 1126 1 Microcystis aeruginosa no rank 446 1 2643300 0 Microcystis sp. MC19 446 species 1 1967666 0 order 4165 1150 20 0 1 23 Oscillatoriales Oscillatoriaceae family 1226 0 1 6 1892254 7 1 0 1155738 2 2 genus 374 Moorea Moorea producens species 372 0 1155739 1 Oscillatoria 1 0 1 3 1158 845 genus 0 1 118323 389 species Oscillatoria acuminata Oscillatoria nigro-viridis species 455 1 482564 0 Gomontiellaceae 22 1892255 2 1 0 504 family 1 241421 0 482 genus Crinalium epipsammum species 482 0 241425 1 Cyanothecaceae family 446 1 0 1892249 3 2 Cyanothece 444 genus 52 43988 2 1 0 0 1 2649277 392 no rank Cyanothece sp. PCC 7425 1 395961 0 392 species Microcoleaceae 1892252 5 1 0 8 family 1149 Microcoleus 1 0 2 44471 12 genus 453 441 no rank 0 2642155 1 0 1 1173027 species 441 Microcoleus sp. PCC 7113 688 genus 4 1205 2 1 0 Trichodesmium Trichodesmium erythraeum 1 1206 0 species 684 3 1892251 1 0 6 family 817 Coleofasciculaceae 811 genus 9 0 1 2 63132 Geitlerinema 802 no rank 0 1 2648775 1173025 1 0 species 802 Geitlerinema sp. PCC 7407 5 1 0 8 52604 1392 order Pleurocapsales family 966 1890498 4 1 0 1 Dermocarpellaceae genus 965 0 1 102115 3 6 Stanieria 0 1 2642663 no rank 476 476 species 0 1 1807358 Stanieria sp. NIES-3757 species 483 0 102116 1 Stanieria cyanosphaera Hyellaceae 0 1 1890500 3 2 family 421 Pleurocapsa 0 1 2 44474 3 genus 419 Pleurocapsa minor 0 54308 1 416 species Tenericutes 38102 phylum 3 0 1 544448 101 Mollicutes 97 31969 0 1 38 class 34263 Acholeplasmatales 186329 13 1 0 6 order 5648 Acholeplasmataceae family 5642 12 2146 1 0 11 1267 genus 70 6 33926 0 1 Candidatus Phytoplasma 0 1 85632 species group 265 0 1 59748 species 265 Candidatus Phytoplasma australiense 85630 1 0 species group 282 species 282 0 1 37692 Candidatus Phytoplasma mali 650 species group 85620 3 0 Maize bushy stunt phytoplasma 240 species 0 202462 1 Onion yellows phytoplasma 1 100379 0 species 229 Aster yellows witches'-broom phytoplasma 181 species 0 1 229545 Acholeplasma 4364 genus 98 1 0 2147 5 1381 species 0 35623 1 Acholeplasma oculi Acholeplasma brassicae 996 species 61635 1 0 2148 1 0 807 species Acholeplasma laidlawii Acholeplasma palmae 0 1 38986 species 1082 Entomoplasmatales 16723 order 10 186328 39 0 1 9 33925 14 0 1 6653 family Entomoplasmataceae Entomoplasma genus 1590 46238 5 0 1 13 Entomoplasma somnilux species 365 0 1 215578 Entomoplasma luminosum 459 species 1 214888 0 Entomoplasma melaleucae species 460 0 81459 1 74700 1 0 species 293 Entomoplasma freundtii Mesoplasma 72 46239 8 1 0 5054 genus Mesoplasma tabanidae species 434 0 1 219745 Mesoplasma florum 717 species 0 2151 1 Mesoplasma chauliocola 1 216427 0 species 419 225999 1 0 species 1123 Mesoplasma syrphidae Mesoplasma lactucae 0 138853 1 1281 species Mesoplasma entomophilum 0 1 2149 532 species Mesoplasma coleopterae 324078 1 0 species 476 Spiroplasmataceae family 10060 24 2131 0 1 16 Spiroplasma 1 0 2132 23 371 genus 10044 species 404 1 2144 0 Spiroplasma mirum Spiroplasma citri species 460 1 2133 0 1 2139 0 species 417 Spiroplasma clarkii Spiroplasma syrphidicola 0 1 216945 341 species Spiroplasma eriocheiris 0 315358 1 species 860 species 495 0 1 2136 Spiroplasma monobiae Spiroplasma culicicola species 724 216935 1 0 0 216942 1 species 387 Spiroplasma litorale 0 362837 1 species 645 Spiroplasma cantharicola 216938 1 0 287 species Spiroplasma helicoides 242 species 1 2137 0 Spiroplasma apis 0 1 216944 560 species Spiroplasma sabaudiense 2637901 2 0 no rank 496 1914410 1 0 species 248 Spiroplasma sp. NBRC 100390 Spiroplasma sp. TU-14 species 248 1898044 1 0 Spiroplasma floricola 467 species 1 216937 0 Spiroplasma diminutum 216936 1 0 490 species species 469 1 216946 0 Spiroplasma turonicum 433 species 1 1114980 0 Spiroplasma atrichopogonis 313 species 0 216934 1 Spiroplasma corruscae 0 1 216933 species 384 Spiroplasma chrysopicola Spiroplasma taiwanense species 445 2145 1 0 354 species 0 47834 1 Spiroplasma kunkelii Mycoplasmatales order 11854 2085 44 0 1 22 Mycoplasmataceae 11832 family 34 2092 43 0 1 2129 3 1 0 2 genus 621 Ureaplasma 323 species 0 1 2130 Ureaplasma urealyticum 0 1 134821 296 species Ureaplasma parvum Mycoplasma 27 2093 0 1 131 genus 7598 Mycoplasma yeatsii 51365 1 0 527 species Mycoplasma wenyonii 24 species 0 1 65123 57372 1 0 species 108 Mycoplasma suis species 516 0 28227 1 Mycoplasma penetrans Mycoplasma mobile 222 species 0 2118 1 Mycoplasma hominis species 389 0 1 2098 0 3 656088 species group 2384 species 1388 0 2102 1 Mycoplasma mycoides Mycoplasma leachii species 450 0 1 2105 Mycoplasma capricolum 1 2095 0 546 species Mycoplasma putrefaciens 0 2123 1 227 species 200 species 0 1 45362 Mycoplasma bovoculi 1 984991 0 88 species Mycoplasma parvum 189 species 0 2111 1 Mycoplasma arthritidis Mycoplasma dispar 175 species 1 86660 0 Mycoplasma gallisepticum 239 species 1 2096 0 no rank 601 1 2683645 0 Mycoplasma sp. (ex Biomphalaria glabrata) 0 1 1749074 601 species 62 species 136241 1 0 Mycoplasma haemocanis 247 species 1 2099 0 Mycoplasma hyopneumoniae Mycoplasma hyorhinis 2100 1 0 species 247 0 171632 1 species 50 Mycoplasma ovis Mycoplasma flocculare 1 2128 0 166 species Mycoplasma genitalium 2097 1 0 150 species 95 species 0 1 29501 Mycoplasma haemofelis Mycoplasma canadense 231 species 29554 1 0 Mycoplasma pneumoniae 1 2104 0 42 species Mycoplasma crocodyli 50052 1 0 288 species genus 3579 12 2767358 0 0 1 2109 species 218 Mycoplasma synoviae Mycoplasma canis 1 29555 0 257 species Mycoplasma pulmonis 0 1 2107 species 289 0 2112 1 species 331 Mycoplasma bovigenitalium Mycoplasma cynos 0 1 171284 species 261 1 2094 0 288 species Mycoplasma arginini Mycoplasma pullorum 206 species 48003 1 0 Mycoplasma bovirhinis species 205 1 29553 0 Mycoplasma bovis 577 species 28903 1 0 0 1 2113 209 species Mycoplasma californicum Mycoplasma agalactiae 0 1 2110 316 species 1 2115 0 species 422 Mycoplasma fermentans 2799557 1 0 1145 no rank 1145 genus 1912503 1 0 1145 no rank 0 2624196 1 1541959 1 0 1145 species Candidatus Izimaplasma sp. HR1 no rank 2691 713063 2 0 species 1328 1911684 1 0 Tenericutes bacterium MO-XQ Tenericutes bacterium MZ-XQ 1911683 1 0 species 1363 Actinobacteria 1663216 phylum 71 647 201174 0 1 0 1 1760 593 7048 class 1573384 Actinobacteria 0 1 52018 282 no rank 0 1650658 1 282 species Actinobacteria bacterium IMCC26256 1175 order 5 0 1 85014 4 Glycomycetales 1 0 3 85034 45 family 1170 Glycomycetaceae Stackebrandtia 7 0 1 2 283810 1125 genus 0 283811 1 species 1118 Stackebrandtia nassauensis 0 622452 3 1339 order Kineosporiaceae 12 0 1 3 83778 1339 family 7 33981 2 0 1 1327 genus Kineococcus Kineococcus radiotolerans 1320 species 0 1 131568 1643684 4 0 1 4 order 1083 Nakamurellales 0 1 3 85031 11 family 1079 Nakamurellaceae genus 1068 53460 2 1 0 14 Nakamurella 1054 species 0 1 53461 Nakamurella multipartita 3029 order 6 8 1643682 0 1 Geodermatophilales 3023 family 70 7 85030 1 0 Geodermatophilaceae Blastococcus genus 740 2 38501 1 0 6 0 1 138336 734 species Blastococcus saxobsidens 1014 genus 30 2 1860 0 1 Geodermatophilus Geodermatophilus obscurus 1 1861 0 species 984 Modestobacter 2 88138 0 1 17 genus 1199 species 1182 1 477641 0 Modestobacter marinus Candidatus Nanopelagicales 1 0 12 2039638 9 order 2024 11 2162846 0 family 2015 genus 1527 0 1 7 622681 28 Candidatus Planktophila Candidatus Planktophila limnetica 1 573600 0 175 species 0 1884905 1 species 407 Candidatus Planktophila versatilis Candidatus Planktophila dulcis 1884914 1 0 species 219 183 species 0 1 1884904 Candidatus Planktophila sulfonica 0 1 1884907 species 166 Candidatus Planktophila vernalis species 349 0 1884913 1 Candidatus Planktophila lacus 4 0 1 2039639 4 488 genus Candidatus Nanopelagicus 96 species 1884634 1 0 Candidatus Nanopelagicus limnes Candidatus Nanopelagicus abundans species 224 0 1 1884916 Candidatus Nanopelagicus hibericus 0 1884915 1 164 species 31677 order 63 1 0 41 85010 Pseudonocardiales family 31614 2070 40 0 1 421 Pseudonocardiaceae Kutzneria 4 2 43356 1 0 1861 genus 1857 species 1 43357 0 Kutzneria albida Kibdelosporangium 1164 genus 6 1 0 2029 2 Kibdelosporangium phytohabitans 1158 species 1 860235 0 Actinoalloteichus 6 65496 0 1 55 genus 4319 Actinoalloteichus hymeniacidonis species 461 1 340345 0 0 2644606 2 no rank 1890 Actinoalloteichus sp. GBA129-24 species 963 1 1612551 0 species 927 1 2072503 0 Actinoalloteichus sp. AHMU CJ021 Actinoalloteichus sp. ADI127-7 976 species 1 1612552 0 937 species 1 1470176 0 Actinoalloteichus hoggarensis 1717 genus 9 0 1 2 2071 Saccharothrix Saccharothrix espanaensis 0 1 103731 species 1708 genus 1244 0 1 2 165301 10 Lentzea Lentzea guizhouensis 1586287 1 0 species 1234 1 0 1847 8 115 genus 6437 Pseudonocardia no rank 5535 0 2619320 6 Pseudonocardia sp. EC080610-09 species 969 0 1 1688404 916 species 0 445576 1 Pseudonocardia sp. AL041005-10 0 1096856 1 species 970 Pseudonocardia sp. EC080619-01 0 1 1641402 884 species Pseudonocardia sp. HH130629-09 species 947 1 1690815 0 Pseudonocardia sp. HH130630-07 0 1 1096868 species 849 Pseudonocardia sp. EC080625-04 species 787 0 240495 1 Pseudonocardia dioxanivorans Amycolatopsis 7 1813 1 0 78 genus 7797 2223 no rank 2618356 2 0 Amycolatopsis sp. BJA-103 929 species 0 1 1911175 1 1896961 0 species 1294 Amycolatopsis sp. AA4 Amycolatopsis methanolica 0 1 1814 1022 species Amycolatopsis japonica 1038 species 1 208439 0 species 1379 0 33910 1 Amycolatopsis mediterranei 2057 species 31958 1 0 Amycolatopsis orientalis Actinosynnema genus 3308 40566 3 1 0 86 species 1551 1 40567 0 Actinosynnema mirum 1671 species 1 42197 0 Actinosynnema pretiosum 142577 1 0 genus 542 Prauserella marina 0 530584 1 542 species 1835 2 1 0 10 genus 1301 Saccharopolyspora 1291 species 1 1836 0 Saccharopolyspora erythraea 1 0 1 1851 2 561 genus Saccharomonospora 560 species 0 1852 1 Saccharomonospora viridis Alloactinosynnema 5 674734 2 0 1 942 genus no rank 937 0 2636053 1 0 1 1653480 937 species Alloactinosynnema sp. L-07 260 0 1 82 85011 92567 order Streptomycetales Streptomycetaceae family 92307 81 2062 1 0 590 genus 86143 75 1883 1 0 3123 Streptomyces 0 1 67267 species 1114 Streptomyces alboflavus Streptomyces chartreusis 1182 species 1 1969 0 Streptomyces autolyticus 75293 1 0 species 1308 Streptomyces scabiei 1160 species 0 1 1930 Streptomyces clavuligerus species 922 1 1901 0 0 1 1912 species 2976 Streptomyces hygroscopicus Streptomyces leeuwenhoekii species 851 0 1437453 1 Streptomyces albulus 0 68570 1 species 1059 Streptomyces glaucescens species 955 0 1 1907 species 1263 146923 1 0 Streptomyces parvulus Streptomyces sp. S10(2016) 0 1783515 1 1062 species 24 2593676 0 24416 no rank species 1335 0 1262452 1 Streptomyces sp. 769 865 species 0 1 1972846 Streptomyces sp. Sge12 Streptomyces sp. SAT1 species 1189 1849967 1 0 1 2094021 0 791 species Streptomyces sp. WAC00288 Streptomyces sp. Tue 6075 893 species 1661694 1 0 0 1 1725411 species 1327 Streptomyces sp. CdTB01 Streptomyces sp. fd1-xmd 965 species 1812480 1 0 Streptomyces sp. M56 1 1495638 0 species 1257 Streptomyces sp. CCM_MD2014 879 species 0 1561022 1 1199 species 0 1 2059884 Streptomyces sp. CMB-StM0423 species 755 0 1 862751 Streptomyces sp. SirexAA-E 1373 species 2135430 1 0 Streptomyces sp. P3 Streptomyces sp. TN58 881 species 1 234612 0 species 832 0 1964449 1 Streptomyces sp. 3211 Streptomyces sp. CNQ-509 species 968 1 444103 0 0 1837283 1 species 608 Streptomyces sp. S8 0 1 1841249 species 1423 Streptomyces sp. RTd22 0 1 1265601 825 species Streptomyces sp. PAMC 26508 1751294 1 0 842 species Streptomyces sp. 4F Streptomyces sp. Mg1 1018 species 0 1 465541 Streptomyces sp. CLI2509 1 1984801 0 710 species 0 206662 1 1451 species Streptomyces sp. FR-008 Streptomyces sp. CFMR 7 species 915 0 1649184 1 Streptomyces sp. MOE7 species 1115 1 1961713 0 0 1642299 1 1265 species Streptomyces alfalfae 1964 species 1 68249 0 Streptomyces pactum 0 1 29303 1066 species Streptomyces cattleya Streptomyces pluripotens 0 1 1355015 965 species Streptomyces rubrolavendulae 285473 1 0 743 species 703 species 1169025 1 0 Streptomyces pratensis Streptomyces venezuelae 1 54571 0 1544 species Streptomyces niveus 845 species 1 193462 0 0 38300 1 species 1025 Streptomyces pristinaespiralis Streptomyces peucetius 1 1950 0 861 species 0 1 2049881 748 species Streptomyces sp. XZHG99 species 883 0 1616117 1 Streptomyces formicae Streptomyces lavendulae 0 1 1914 1012 species 1378 species 0 1 68280 Streptomyces violaceusniger Streptomyces lydicus 1 47763 0 2990 species species 2730 0 1888 1 Streptomyces albus 1203 species 0 1926 1 Streptomyces reticuli Streptomyces xiamenensis 0 408015 1 1173 species Streptomyces violaceoruber 1 1935 0 905 species Streptomyces bingchenggensis 1 379067 0 1508 species 878 species 0 1889 1 Streptomyces ambofaciens 960 species 0 1 1971 Streptomyces noursei Streptomyces lincolnensis species 1457 1915 1 0 2 629295 0 1930 species group 1014 species subgroup 1482596 1 0 Streptomyces griseus 0 1 1911 1014 species 916 species subgroup 0 1 1482558 Streptomyces globisporus 1908 1 0 species 916 0 92644 1 1271 species Streptomyces malaysiensis 2157 species group 1477431 2 0 1 42239 0 1105 species Streptomyces sampsonii 1902 1 0 1052 species Streptomyces coelicolor Streptomyces puniciscabiei 164348 1 0 1282 species species 1032 1 68214 0 Streptomyces griseochromogenes species 893 0 1 1940 Streptomyces albireticuli species 1135 553510 1 0 Streptomyces gilvosporeus species 1069 1 362257 0 Streptomyces vietnamensis Streptomyces fulvissimus 641 species 1 68202 0 Streptomyces lividans 0 1916 1 species 1001 Streptomyces xinghaiensis 1 1038928 0 species 905 Streptomyces cyaneogriseus 932 species 1 68192 0 Streptomyces avermitilis 830 species 0 33903 1 Streptomyces collinus 1 42684 0 species 868 Kitasatospora genus 5574 0 1 5 2063 50 0 1 1894 species 1192 Kitasatospora aureofaciens Kitasatospora setae species 1760 1 2066 0 no rank 1581 1 2633591 0 species 1581 2018025 1 0 Kitasatospora sp. MMS16-BH015 Kitasatospora albolonga 991 species 0 68173 1 order 188 2 1643683 0 0 2 85032 family 188 genus 188 2 28048 0 1 1 Acidothermus 1 28049 0 187 species Acidothermus cellulolyticus order 101935 143 85006 1 0 622 Micrococcales 1 0 85019 3 8 family 1248 Brevibacteriaceae Brevibacterium 1240 genus 15 1 0 2 1696 Brevibacterium linens 1225 species 0 1703 1 Dermatophilaceae 3 85018 1 0 10 family 266 1 0 1862 2 2 genus 256 Dermatophilus Dermatophilus congolensis species 254 1863 1 0 Promicromonosporaceae 3598 family 43 9 85017 1 0 1220 genus 23 254250 3 0 1 Isoptericola 139208 1 0 439 species Isoptericola variabilis Isoptericola dokdonensis 0 372663 1 species 758 Xylanimonas 10 2 186188 1 0 1015 genus 1 186189 0 1005 species Xylanimonas cellulosilytica 1320 genus 22 1 0 157920 3 Cellulosimicrobium Cellulosimicrobium cellulans 704 species 0 1710 1 no rank 594 0 1 2624466 594 species 1980001 1 0 Cellulosimicrobium sp. TH-20 577468 2 0 no rank 127 1 0 2 2038 1 genus 127 Tropheryma Tropheryma whipplei 0 2039 1 126 species Micrococcaceae family 60423 39 1268 0 1 3853 Kocuria genus 2576 4 57493 1 0 37 Kocuria flava species 873 1 446860 0 Kocuria palustris 1 71999 0 729 species Kocuria rhizophila species 937 1 72000 0 Sinomonas 752 genus 6 1 0 596707 2 746 species 0 37927 1 Sinomonas atrocyanea 15 1 0 4 1742993 2808 genus Pseudarthrobacter Pseudarthrobacter phenanthrenivorans 361575 1 0 1034 species 1 121292 0 species 735 Pseudarthrobacter sulfonivorans Pseudarthrobacter chlorophenolicus 1024 species 0 1 85085 12 1 0 1269 2 995 genus Micrococcus 0 1270 1 983 species Micrococcus luteus 0 1 2078575 genus 490 Arthrobacter sp. IHBB 11108 species 490 1 1618207 0 Arthrobacter 13085 genus 309 0 1 15 1663 1523 species 0 656366 1 Arthrobacter alpinus 0 12 235627 10266 no rank Arthrobacter sp. Rue61a species 651 1 1118963 0 Arthrobacter sp. LS16 1690248 1 0 species 1336 species 1123 1 290399 0 Arthrobacter sp. FB24 Arthrobacter sp. YN 2020486 1 0 645 species Arthrobacter sp. ERGS1:01 species 844 0 1704044 1 874 species 0 1 2079227 Arthrobacter sp. PGP41 Arthrobacter sp. ZXY-2 0 1 1806905 624 species 1 1494608 0 725 species Arthrobacter sp. PAMC 25486 Arthrobacter sp. ATCC 21022 512 species 0 1 1771959 1 1652545 0 species 1087 Arthrobacter sp. YC-RL1 Arthrobacter sp. U41 0 1849032 1 species 975 Arthrobacter sp. QXT-31 1 1357915 0 species 870 987 species 0 37928 1 Arthrobacter crystallopoietes Neomicrococcus 1796 genus 47 1868332 2 0 1 0 556325 1 1749 species Neomicrococcus aestuarii Paenarthrobacter 1 0 2 1742992 1 genus 713 1 43663 0 species 712 Paenarthrobacter aurescens 1 1645 0 191 genus species 191 0 1 1646 Renibacterium salmoninarum Rothia genus 32175 0 1 32207 3 4 0 1 43675 31433 species Rothia mucilaginosa 1 2047 0 species 738 Rothia dentocariosa 0 1 1742989 2 5 genus 989 Glutamicibacter 984 species 0 256701 1 Glutamicibacter arilaitensis Dermabacteraceae 5384 family 57 0 1 85020 10 genus 322 0 1 36739 0 1 1630135 species 322 Dermabacter vaginalis 2 472568 0 1 4 genus 325 Devriesea Devriesea agamarum 0 472569 1 321 species Brachybacterium genus 4680 0 1 6 43668 118 1 2623841 0 no rank 970 species 970 1 1903186 0 Brachybacterium sp. P6-10-X1 1055 species 0 43669 1 Brachybacterium faecium 0 2017484 1 810 species Brachybacterium sp. VM2412 Brachybacterium sp. VR2415 0 1 2017485 species 822 Brachybacterium ginsengisoli 1 1331682 0 species 905 Sanguibacteraceae 897 family 13 1 0 145360 3 Sanguibacter 884 genus 8 60919 2 1 0 Sanguibacter keddieii 876 species 1 60920 0 209 family 3 85022 3 0 1 Jonesiaceae 9 2 43673 1 0 206 genus Jonesia Jonesia denitrificans 0 43674 1 species 197 638 family 0 125316 2 Beutenbergia genus 638 2 84756 0 1 13 Beutenbergia cavernae 625 species 0 84757 1 family 20935 85023 46 0 1 259 Microbacteriaceae 1 447237 0 genus 641 0 1 2626248 641 no rank Frondihabitans sp. PAMC 28766 0 1795630 1 species 641 1350 genus 12 1 0 110932 2 Leifsonia Leifsonia xyli species 1338 1575 1 0 Cryobacterium 2016 genus 9 0 1 3 69578 1 2649013 0 1079 no rank Cryobacterium sp. LW097 1 1978566 0 species 1079 species 928 1 670052 0 Cryobacterium arcticum 994 genus 7 33886 3 1 0 Rathayibacter Rathayibacter toxicus 145458 1 0 species 426 561 species 0 1 33888 Rathayibacter tritici Curtobacterium 4 2034 0 1 40 genus 1769 Curtobacterium pusillum species 671 1 69373 0 no rank 1058 257496 2 0 0 1 1905847 428 species Curtobacterium sp. BH-2-1-1 Curtobacterium sp. MR_MD2014 630 species 0 1561023 1 0 1434032 1 136 genus 136 species 0 1159327 1 Pontimonas salivibrio 171 genus 1 1705353 0 0 708131 1 species 171 Aurantimicrobium minutum 720 genus 1 1759331 2 1 0 Cnuibacter species 719 1619308 1 0 Cnuibacter physcomitrellae Microbacterium 8042 genus 213 33882 14 0 1 Microbacterium paludicola 757 species 0 1 300019 0 2033 1 species 522 Microbacterium testaceum Microbacterium hominis species 838 0 1 162426 1 84292 0 species 470 Microbacterium chocolatum 0 8 2609290 4455 no rank 421 species 0 1938334 1 Microbacterium sp. TPU 3598 0 1696072 1 466 species Microbacterium sp. CGR1 576 species 0 367477 1 Microbacterium sp. XT11 Microbacterium sp. str. 'China' 1 2103230 0 species 621 Microbacterium sp. PAMC 28756 0 1 1795053 species 860 1 1714373 0 566 species Microbacterium sp. No. 7 Microbacterium sp. 1.5R 1916917 1 0 species 456 1 1906742 0 489 species Microbacterium sp. BH-3-3-3 0 1 36805 787 species Microbacterium aurum 3 1 0 337004 2 422 genus Microcella Microcella alkaliphila species 419 0 1 279828 Agromyces 3 33877 2 0 1 689 genus Agromyces aureus species 686 1 453304 0 Microterricola 518733 2 1 0 1 genus 703 Microterricola viridarii species 702 1 412690 0 2 1655488 0 no rank 274 0 1655489 2 clade 274 2 529883 0 274 genus Candidatus Rhodoluna planktonica 0 1 535712 114 species species 160 1 529884 0 Rhodoluna lacicola genus 2749 6 1573 1 0 157 Clavibacter Clavibacter michiganensis species 2592 1 0 5 28447 505 subspecies 651 1 1874630 0 Clavibacter capsici 450 subspecies 1 31963 0 Clavibacter nebraskensis subspecies 535 1 31964 0 Clavibacter sepedonicus Clavibacter insidiosus 1 33014 0 subspecies 451 64 7 145357 1 0 2012 family Dermacoccaceae Dermacoccus 542 genus 1 2 57495 0 1 1 1274 0 541 species Dermacoccus nishinomiyaensis 805 genus 17 1 0 745364 2 Luteipulveratus Luteipulveratus mongoliensis species 788 0 571913 1 Kytococcus 10 2 57499 0 1 601 genus Kytococcus sedentarius species 591 1276 1 0 Intrasporangiaceae 21 9 85021 0 1 2839 family Janibacter 1 1 0 53457 2 496 genus 0 857417 1 495 species Janibacter indicus Intrasporangium 10 1 0 2 53357 456 genus Intrasporangium calvum 1 53358 0 species 446 0 1 267408 2 19 genus 920 Arsenicicoccus 901 no rank 0 1 2663846 species 901 1658671 1 0 Arsenicicoccus sp. oral taxon 190 Serinicoccus 946 genus 40 2 265976 1 0 Serinicoccus sp. JLT9 species 906 0 1758689 1 1 0 6 85016 13 family 2737 Cellulomonadaceae 2724 genus 45 5 1707 0 1 Cellulomonas Cellulomonas fimi 0 1 1708 745 species Cellulomonas flavigena 1 1711 0 species 844 Cellulomonas gilvus 517 species 11 1 0 no rank 573 1 2620175 0 573 species 0 2003551 1 Cellulomonas sp. PSBB021 Corynebacteriales 1 0 163 85007 676 order 98929 9 3 316606 0 1 433 family Segniliparaceae 286801 2 0 1 6 genus 424 Segniliparus Segniliparus rotundus 0 1 286802 418 species Tsukamurellaceae family 1295 1 0 4 85028 28 19 3 2060 1 0 1267 genus Tsukamurella Tsukamurella tyrosinosolvens 857 species 1 57704 0 391 species 2061 1 0 Tsukamurella paurometabola 2 697024 0 no rank 306 2 1 0 1847725 2 306 genus Lawsonella 304 species 1 1528099 0 Lawsonella clevelandensis 952 family 13 85029 4 1 0 Dietziaceae 3 37914 1 0 12 genus 939 Dietzia 2617939 1 0 no rank 426 species 426 1 712270 0 Dietzia sp. oral taxon 368 499555 1 0 species 501 Dietzia timorensis Mycobacteriaceae 153 1762 57 0 1 34523 family 3187 genus 670516 5 0 Mycobacterium stephanolepidis 1 1520670 0 609 species Mycobacterium chelonae 1 1774 0 521 species 1 36809 0 999 species Mycobacterium abscessus 0 1 1578165 639 species Mycobacterium saopaulense Mycobacterium immunogenum 419 species 0 1 83262 1 1 0 697025 2 466 genus Hoyosella 465 species 0 639313 1 Hoyosella subflava genus 10784 0 13 1866885 species 819 0 1795 1 Mycobacterium neoaurum 580 species 36814 1 0 Mycobacterium rhodesiae Mycobacterium litorale species 852 1 758802 0 species 1214 1 1791 0 Mycobacterium aurum Mycobacterium chubuense 753 species 1800 1 0 Mycobacterium thermoresistibile 0 1 1797 species 797 0 1 1772 species 1008 Mycobacterium smegmatis species 878 0 1771 1 Mycobacterium phlei 0 1804 1 704 species Mycobacterium gilvum Mycobacterium vaccae 1810 1 0 species 796 626 species 1 1766 0 Mycobacterium fortuitum Mycobacterium goodii 0 134601 1 938 species species 819 0 1 110539 Mycobacterium vanbaalenii genus 1221 2 1073531 0 0 875328 1 species 649 Mycobacterium sinense Mycobacterium terrae 1 1788 0 572 species 18712 genus 1480 1 0 1763 34 Mycobacterium Mycobacterium ulcerans species 579 0 1809 1 13 2642494 0 no rank 7393 0 1 189918 species 362 Mycobacterium sp. KMS 561 species 1 1545728 0 Mycobacterium sp. EPa45 Mycobacterium sp. MCS species 347 1 164756 0 Mycobacterium sp. WY10 581 species 0 1 1920667 164757 1 0 390 species Mycobacterium sp. JLS Mycobacterium sp. NRRL B-3805 0 1570328 1 819 species species 631 212767 1 0 Mycobacterium sp. JS623 Mycobacterium sp. PYR15 species 728 1 2051552 0 596 species 0 1273687 1 Mycobacterium sp. VKM Ac-1817D Mycobacterium sp. djl-10 1879023 1 0 918 species 847 species 1682113 1 0 Mycobacterium sp. YC-RL4 0 1561223 1 502 species Mycobacterium sp. QIA-37 Mycobacterium sp. MOTT36Y 111 species 0 1 1168287 184 species 0 1 1769 Mycobacterium leprae 77643 4 0 species group 1381 Mycobacterium tuberculosis 1 0 1773 3 384 species 1065 biotype 347 1765 1 0 Mycobacterium bovis Mycobacterium africanum 0 33894 1 334 biotype species 316 0 1 78331 Mycobacterium canettii Mycobacterium dioxanotrophicus 761 species 0 1 482462 Mycobacterium marinum species 643 0 1 1781 Mycobacterium kansasii 903 species 1768 1 0 species 493 1 29311 0 Mycobacterium haemophilum 0 2249310 1 species group 538 Mycobacterium shigaense species 538 722731 1 0 species group 3873 8 120793 0 309 4 1767 1 0 1207 species Mycobacterium intracellulare Mycobacterium indicus pranii 35617 1 0 subspecies 160 Mycobacterium chimaera 509 subspecies 222805 1 0 1203599 1 0 subspecies 229 Mycobacterium yongonense Mycobacterium avium 0 1 1764 1346 species Mycobacterium paraintracellulare 0 1 1138383 species 182 0 1 339268 species 708 Mycobacterium colombiense 430 species 701042 1 0 Mycobacterium marseillense 484 species 1 261524 0 Mycobacterium liflandii Nocardiaceae family 23031 31 85025 1 0 201 genus 9335 0 1 1817 7 163 Nocardia Nocardia brasiliensis 0 1 37326 1977 species 1061 species 0 1 37330 Nocardia nova 1246 species 0 37332 1 Nocardia seriolae species 1452 455432 1 0 Nocardia terpenica Nocardia farcinica 1362 species 0 1 37329 Nocardia cyriacigeorgica 1 135487 0 2074 species genus 13495 1827 23 1 0 447 Rhodococcus Rhodococcus erythropolis species 776 0 1833 1 species 856 0 191292 1 Rhodococcus aetherivorans Rhodococcus fascians 0 1 1828 470 species 479 species 1 1829 0 Rhodococcus rhodochrous 1 103816 0 457 species Rhodococcus pyridinivorans Rhodococcus jostii 1 132919 0 species 697 Rhodococcus qingshengii 533 species 334542 1 0 Rhodococcus hoagii 676 species 0 43767 1 5654 no rank 0 192944 12 Rhodococcus sp. WB1 1 1033922 0 762 species 1570939 1 0 species 354 Rhodococcus sp. 2G Rhodococcus sp. p52 363 species 1 935199 0 species 435 0 1 1723645 Rhodococcus sp. 008 species 530 1 1805827 0 Rhodococcus sp. MTM3W5.2 species 431 0 1807790 1 Rhodococcus sp. BH4 1 1045808 0 495 species Rhodococcus sp. YL-1 species 549 1 1727214 0 Rhodococcus sp. H-CA8f 0 1564114 1 species 526 Rhodococcus sp. B7740 0 679318 1 species 255 Rhodococcus sp. WMMA185 0 1 1653478 497 species Rhodococcus sp. PBTS 1 457 species 0 1 1653479 Rhodococcus sp. PBTS 2 793 species 1830 1 0 Rhodococcus ruber Rhodococcus opacus 1 37919 0 species 1657 Gordoniaceae family 4452 85026 9 0 1 48 Gordonia 4404 genus 201 1 0 2053 8 0 2657482 2 no rank 1139 species 654 1 337191 0 Gordonia sp. KTR9 0 2059875 1 species 485 Gordonia sp. YC-JH1 Gordonia terrae 2055 1 0 species 708 1 84595 0 species 599 Gordonia polyisoprenivorans 0 1 1136941 species 602 Gordonia phthalatica Gordonia iterans 1 1004901 0 530 species 625 species 1 2054 0 Gordonia bronchialis 1653 52 1 0 214 family 33261 Corynebacteriaceae Corynebacterium 795 0 1 51 1716 33047 genus 0 1 1121358 species 473 Corynebacterium doosanense 496 species 0 1717 1 Corynebacterium diphtheriae species 770 0 1 43771 Corynebacterium urealyticum Corynebacterium ureicelerivorans 1 401472 0 species 469 0 349751 1 species 836 Corynebacterium marinum Corynebacterium falsenii 108486 1 0 745 species Corynebacterium aquilae 669 species 0 1 203263 0 1 146827 species 921 Corynebacterium simulans 0 1 191610 509 species Corynebacterium atypicum Corynebacterium frankenforstense 1 1230998 0 862 species 573 species 0 1697 1 Corynebacterium ammoniagenes Corynebacterium phocae species 497 1 161895 0 Corynebacterium aurimucosum 1 169292 0 992 species Corynebacterium kroppenstedtii 0 161879 1 species 321 species 703 0 1 156978 Corynebacterium imitans 0 1 1719 429 species Corynebacterium pseudotuberculosis Corynebacterium resistens 0 1 258224 336 species species 325 1 35757 0 Corynebacterium cystitidis 0 225326 1 species 902 Corynebacterium halotolerans 1 1652495 0 species 311 Corynebacterium crudilactis Corynebacterium vitaeruminis 38305 1 0 1518 species 0 1 92706 species 302 [Brevibacterium] flavum species 346 0 1 89154 Corynebacterium terpenotabidum Corynebacterium kutscheri 1 35755 0 species 214 Corynebacterium ulcerans species 443 1 65058 0 Corynebacterium variabile 1727 1 0 species 728 910 species 191493 1 0 Corynebacterium sphenisci Corynebacterium maris 1 575200 0 species 555 0 1 1223514 species 706 Corynebacterium humireducens 950 species 0 1 152794 Corynebacterium efficiens 0 1 160386 species 572 Corynebacterium casei Corynebacterium deserti 0 1408191 1 518 species 0 1 1404244 682 species Corynebacterium glyciniphilum Corynebacterium callunae 1721 1 0 502 species Corynebacterium flavescens 1 28028 0 species 401 0 571915 1 species 264 Corynebacterium mustelae species 1688 43770 1 0 Corynebacterium striatum 0 1231000 1 species 600 Corynebacterium lactis 161899 1 0 species 498 Corynebacterium singulare species 317 0 1 1050174 Corynebacterium epidermidicanis Corynebacterium camporealensis 161896 1 0 569 species 1124 species 38289 1 0 Corynebacterium jeikeium species 1571 1 42817 0 Corynebacterium argentoratense Corynebacterium uterequi species 618 1 1072256 0 1021 no rank 2624378 2 0 Corynebacterium sp. NML98-0116 445 species 0 1 702967 576 species 0 1 1487956 Corynebacterium sp. ATCC 6931 Corynebacterium stationis 642 species 0 1 1705 Corynebacterium glaucum species 517 0 1 187491 species 502 1 136857 0 Corynebacterium testudinoris Corynebacterium glutamicum 0 1 1718 835 species Bifidobacteriales 150 0 1 25 85004 1156659 order family 1156509 31953 24 0 1 16346 Bifidobacteriaceae 1 2701 0 genus 739 2702 1 0 739 species Gardnerella vaginalis genus 1138074 19 1678 1 0 1738 Bifidobacterium Bifidobacterium pseudolongum 1694 1 0 species 2171 0 1691 1 643 species Bifidobacterium indicum Bifidobacterium asteroides 0 1684 1 species 1252 Bifidobacterium longum 1 216816 0 species 487599 species 340889 0 28026 1 Bifidobacterium pseudocatenulatum Bifidobacterium angulatum species 5865 1683 1 0 Bifidobacterium coryneforme 573 species 1687 1 0 0 1 1689 species 3247 Bifidobacterium dentium Bifidobacterium animalis 1685 species 0 1 28025 Bifidobacterium scardovii 2785 species 158787 1 0 Bifidobacterium bifidum 45383 species 1 1681 0 0 1 638619 species 942 Bifidobacterium actinocoloniiforme Bifidobacterium choerinum species 1182 35760 1 0 Bifidobacterium thermophilum species 2248 0 33905 1 Bifidobacterium breve species 79871 1685 1 0 Bifidobacterium adolescentis 20328 species 0 1680 1 Bifidobacterium catenulatum species 139673 1686 2 0 1 42334 Bifidobacterium kashiwanohense 1 630129 0 subspecies 97339 genus 803 1 0 196082 2 1 Parascardovia Parascardovia denticolens 1 78258 0 species 802 genus 547 1 196081 0 Scardovia inopinata 547 species 1 78259 0 0 1643818 2 no rank 864 1 0 2 147067 3 genus 864 Thermobispora Thermobispora bispora 0 2006 1 species 861 Actinomycetales 24 1 0 18 2037 23057 order 23033 family 7402 17 2049 1 0 Actinomycetaceae 503 genus 1 1653174 0 503 species 0 59505 1 Actinotignum schaalii 28263 1 0 genus 504 Arcanobacterium haemolyticum 1 28264 0 504 species 9 1654 0 1 172 genus 7998 Actinomyces species 995 0 1 544580 Actinomyces oris 1834 species 1 1852377 0 Actinomyces pacaensis Actinomyces radicidentis species 1008 0 1 111015 Actinomyces gaoshouyii 0 1960083 1 658 species 1 1912795 0 species 310 Actinomyces sp. VUL4_3 no rank 3021 3 2609248 0 Actinomyces sp. oral taxon 897 species 992 1 2081702 0 712122 1 0 species 1142 Actinomyces sp. oral taxon 414 Actinomyces sp. Chiba101 887 species 1851395 1 0 1528 genus 3 1 0 2 1069494 Trueperella Trueperella pyogenes species 1525 0 1 1661 genus 970 1 2529408 0 1 52773 0 970 species Actinomyces meyeri 121 2050 2 1 0 4128 genus Mobiluncus Mobiluncus curtisii 0 2051 1 species 4007 Frankiales 21 0 1 85013 7 3554 order 36 0 1 74712 6 3533 family Frankiaceae 3497 genus 55 0 1 1854 5 Frankia no rank 928 2632575 1 0 Frankia sp. EAN1pec 1 298653 0 species 928 Frankia casuarinae 504 species 0 1 106370 Frankia inefficax 298654 1 0 species 1097 Frankia alni 0 1 1859 913 species Catenulisporales 1936 order 14 414714 4 1 0 414877 3 1 0 13 family 1922 Catenulisporaceae 23 1 0 2 414878 1909 genus Catenulispora Catenulispora acidiphila species 1886 1 304895 0 0 1 85009 34 104 order 18466 Propionibacteriales Nocardioidaceae 0 1 13 85015 120 family 5947 0 1 4 1839 59 genus 2279 Nocardioides Nocardioides sp. 78 2045452 1 0 species 740 Nocardioides dokdonensis 0 450734 1 733 species no rank 747 0 2615069 1 747 species 0 1 196162 Nocardioides sp. JS614 Aeromicrobium 2040 2 0 1 9 genus 622 Aeromicrobium erythreum 0 2041 1 species 613 Micropruina genus 948 0 1 2 116071 5 Micropruina glycogenica 0 1 75385 943 species Pimelobacter 0 1 2 2044 58 genus 983 Pimelobacter simplex 2045 1 0 925 species Kribbella 17 182639 2 1 0 995 genus Kribbella flavida 182640 1 0 species 978 Propionibacteriaceae 12415 family 163 31957 20 1 0 genus 2302 1 0 203133 2 1 Propionimicrobium 1 2633994 0 no rank 2301 species 2301 1871034 1 0 Propionimicrobium sp. Marseille-P3275 0 1 29404 2 6 genus 622 Microlunatus Microlunatus phosphovorus 616 species 29405 1 0 Cutibacterium genus 2243 0 1 4 1912216 11 species 450 1 33011 0 Cutibacterium granulosum Cutibacterium avidum 0 33010 1 species 935 Cutibacterium acnes 0 1747 1 species 847 7 0 1 2 1912215 1045 genus Acidipropionibacterium Acidipropionibacterium acidipropionici species 1038 1748 1 0 1935 genus 42 3 1743 1 0 Propionibacterium 2608905 1 0 347 no rank Propionibacterium sp. oral taxon 193 species 347 671223 1 0 Propionibacterium freudenreichii 1744 1 0 1546 species 0 2801844 1 704 genus Pseudopropionibacterium propionicum 1750 1 0 species 704 35 0 1 72763 5 3401 genus Tessaracoccus 1 1332264 0 species 873 Tessaracoccus aquimaris 699 species 0 1 1610493 Tessaracoccus flavus species 735 399497 1 0 Tessaracoccus flavescens 1 2635419 0 1059 no rank 1059 species 0 1909732 1 Tessaracoccus sp. T2.5-30 1 0 16 85012 47 order 10973 Streptosporangiales Thermomonosporaceae 1959 family 23 2012 3 0 1 1 0 2 2019 41 genus 1936 Thermomonospora 1 2020 0 1895 species Thermomonospora curvata 0 1 83676 7 66 family 4223 Nocardiopsaceae 557 genus 6 1 0 83677 2 Thermobifida Thermobifida fusca 2021 1 0 species 551 Nocardiopsis 3600 genus 50 4 2013 0 1 Nocardiopsis dassonvillei 0 1 2014 1570 species 280236 1 0 1068 species Nocardiopsis gilva 912 species 0 1 53437 Nocardiopsis alba 1 0 2004 5 46 family 4744 Streptosporangiaceae 23 1 0 83681 2 2574 genus Nonomuraea 0 1 2593643 no rank 2551 1909395 1 0 species 2551 Nonomuraea sp. ATCC 55076 2 2000 0 1 12 genus 2124 Streptosporangium 1 2001 0 species 2112 Streptosporangium roseum 15823 order 56 85008 20 0 1 Micromonosporales Micromonosporaceae 15767 family 200 0 1 19 28056 genus 3565 1 0 4 673534 49 Plantactinospora no rank 3516 3 2631981 0 1 2071627 0 1100 species Plantactinospora sp. BB1 Plantactinospora sp. KBS50 0 2024580 1 species 1189 0 2108470 1 1227 species Plantactinospora sp. BC1 Verrucosispora genus 7 0 1 84593 Salinispora 9 0 1 168694 3 1652 genus 1 168695 0 714 species Salinispora tropica Salinispora arenicola 0 1 168697 929 species Micromonospora 61 0 1 4 1873 3647 genus Verrucosispora maris 1 1003110 0 877 species Micromonospora aurantiaca 1244 species 0 47850 1 0 1 2617518 no rank 1465 species 1465 648999 1 0 Micromonospora sp. L5 genus 6696 0 1 6 1865 152 Actinoplanes Actinoplanes missouriensis 1866 1 0 species 1117 196914 1 0 1358 species Actinoplanes friuliensis 2626549 3 0 no rank 4069 Actinoplanes sp. SE50 2033844 1 0 species 1295 Actinoplanes sp. SE50/110 0 1 134676 species 1295 0 649831 1 species 1479 Actinoplanes sp. N902-109 0 622450 3 776 order 776 family 6 0 1 3 622451 Actinopolysporaceae Actinopolyspora 1 0 1849 2 2 genus 770 414996 1 0 species 768 Actinopolyspora erythraea Rubrobacteria 84995 6 1 0 15 class 1518 order 1503 84996 5 0 1 26 Rubrobacterales 1 0 4 84997 7 family 1477 Rubrobacteraceae genus 1470 42255 3 0 1 38 Rubrobacter Rubrobacter radiotolerans 352 species 0 1 42256 1 49319 0 species 1080 Rubrobacter xylanophilus 0 1752188 4 504 no rank species 93 1 1848755 0 Actinobacteria bacterium IMCC26077 Actinobacteria bacterium IMCC25003 species 162 0 1 1848255 Actinobacteria bacterium IMCC19121 123 species 1848754 1 0 126 species 1848756 1 0 Actinobacteria bacterium IMCC26103 5 1497346 1 0 5 class 1113 Thermoleophilia Solirubrobacterales 50 4 588673 0 1 1108 order Conexibacteraceae family 1058 1 0 320583 3 7 1 0 191494 2 12 genus 1051 Conexibacter Conexibacter woesei 0 1 191495 species 1039 494 0 1 84998 32 85755 class Coriobacteriia Eggerthellales order 57018 1643822 17 1 0 493 family 56525 0 1 1643826 16 13858 Eggerthellaceae genus 5910 0 1 1981050 Phoenicibacter massiliensis 0 1944646 1 species 5910 10353 genus 80 3 644652 1 0 Gordonibacter Gordonibacter urolithinfaciens 5448 species 1335613 1 0 Gordonibacter massiliensis 0 1 1841863 4825 species 488 genus 1 2 84162 0 1 Cryptobacterium 0 1 84163 species 487 Cryptobacterium curtum genus 6266 0 1 2 447020 4 Adlercreutzia Adlercreutzia equolifaciens 6262 species 0 446660 1 80 3 84111 1 0 13286 genus Eggerthella 0 1 2648737 2633 no rank 0 502558 1 2633 species Eggerthella sp. YY7918 10573 species 84112 1 0 Eggerthella lenta genus 2095 2 79603 1 0 2 Denitrobacterium Denitrobacterium detoxificans 0 1 79604 2093 species genus 4269 84108 2 1 0 16 Slackia 0 84110 1 4253 species Slackia heliotrinireducens 84999 14 0 1 429 order 28243 Coriobacteriales Coriobacteriaceae 15320 family 2709 1 0 84107 6 Coriobacterium 1804 genus 2 2 33870 1 0 0 33871 1 species 1802 Coriobacterium glomerans Collinsella 7915 genus 81 1 0 102106 2 74426 1 0 species 7834 Collinsella aerofaciens no rank 2892 0 1 84113 Coriobacteriaceae bacterium 68-1-3 2892 species 0 1 1531429 0 1 7 1643824 603 family 12494 Atopobiaceae Atopobium 8 genus 1380 1 0 10572 genus 147 0 1 133925 4 Olsenella species 5234 1 1805478 0 Olsenella sp. Marseille-P2300 1 2638792 0 2114 no rank 0 712411 1 species 2114 Olsenella sp. oral taxon 807 Olsenella uli 0 133926 1 species 3077 1311 genus 0 2767353 1 Atopobium parvulum species 1311 1382 1 0 Acidimicrobiia 6 84992 0 1 2 class 871 48 0 1 5 84993 869 order Acidimicrobiales 9 1 0 2 84994 234 family Acidimicrobiaceae genus 225 0 1 53634 0 1 53635 225 species Acidimicrobium ferrooxidans 0 2448023 2 587 family Ilumatobacter 587 genus 6 682522 2 1 0 Ilumatobacter coccineus species 581 1 467094 0 356 1783270 0 clade 19673159 0 2 456828 phylum 440 Candidatus Cloacimonas genus 440 0 1 456826 2 1 1 456827 0 439 species Candidatus Cloacimonas acidaminovorans 1291 phylum 0 65842 3 class 1291 0 204430 3 order 1291 0 3 218872 2 204431 3 1 0 1291 family Fibrobacteraceae Fibrobacter 8 1 0 832 2 1289 genus 1281 species 1 833 0 Fibrobacter succinogenes 0 142182 8 2834 phylum 219685 8 1 0 10 class 2834 Gemmatimonadetes Gemmatimonadales order 2824 0 1 7 219686 53 Gemmatimonadaceae 6 219687 1 0 27 family 2771 Gemmatimonas 73 173479 3 1 0 1459 genus 0 1379270 1 609 species Gemmatimonas phototrophica Gemmatimonas aurantiaca species 777 0 1 173480 Gemmatirosa 0 1 2 1706036 8 genus 1285 1 861299 0 1277 species Gemmatirosa kalamazoonesis 0 68336 343 clade 19668594 1134404 6 0 phylum 1117 1117 class 0 6 795747 order 1117 0 1 795748 6 3 Ignavibacteriales family 612 795749 3 0 1 1 Ignavibacteriaceae 611 genus 1 2 795750 1 0 Ignavibacterium Ignavibacterium album 0 591197 1 610 species 2 1334117 0 502 family 0 1 1134403 2 1 genus 502 Melioribacter 1 1134405 0 species 501 Melioribacter roseus 19658684 phylum 27 0 1 976 315 Bacteroidetes 1937959 6 0 1 3 class 1704 Saprospiria 2 1936988 5 1 0 1701 order Saprospirales 1235 family 2 1937961 2 0 1 Haliscomenobacteraceae 2349 1 0 genus 1233 Haliscomenobacter hydrossis species 1233 1 2350 0 464 family 0 2 89374 464 genus 2 1007 2 1 0 Saprospira species 462 0 1 1008 Saprospira grandis Chitinophagia 12 1853228 14 1 0 8364 class Chitinophagales 0 1 13 1853229 4 order 8352 22 1 0 12 563835 8348 family Chitinophagaceae genus 747 1 398041 0 Flavisolibacter tropicus 0 1492898 1 species 747 2 0 1 2 354354 1119 genus Niastella Niastella koreensis species 1117 0 354356 1 Filimonas 0 1 2 649460 5 genus 1371 1366 species 0 477680 1 Filimonas lacunae Arachidicoccus 1769012 2 1 0 1 genus 579 no rank 578 1 2636138 0 1850526 1 0 species 578 Arachidicoccus sp. BS20 0 79328 2 2508 genus 1 2029983 0 909 species Chitinophagaceae bacterium 13 79329 1 0 species 1599 Chitinophaga pinensis 2002 genus 379899 2 0 Niabella soli species 889 0 1 446683 Niabella ginsenosidivorans 0 1 1176587 1113 species Cytophagia 51 1 0 58 768503 33301 class 128 1 0 768507 57 33250 order Cytophagales 0 2 1501348 family 361 149 genus 273135 1 0 2641185 1 0 149 no rank 249402 1 0 species 149 Cardinium endosymbiont of Encarsia pergandiella 0 281119 1 212 genus 0 1 281120 212 species Candidatus Amoebophilus asiaticus 0 1853234 2 1541 family Persicobacter genus 1541 0 1 2 59740 10 1 2664020 0 1531 no rank Persicobacter sp. JZB09 1531 species 0 1 1085624 Cyclobacteriaceae 3274 family 4 563798 10 0 1 4 1 0 246875 2 451 genus Algoriphagus 1727163 1 0 species 447 Algoriphagus sp. M8-2 genus 1307 68288 3 1 0 7 Cyclobacterium Cyclobacterium amurskyense species 609 0 1 320787 1 104 0 species 691 Cyclobacterium marinum genus 650 2 232244 1 0 1 Belliella Belliella baltica 649 species 232259 1 0 Echinicola 390846 2 0 1 3 genus 862 0 390884 1 859 species Echinicola vietnamensis Hymenobacteraceae family 15800 1853232 16 0 1 42 Hymenobacter 0 1 89966 8 105 genus 11087 1593 species 1446467 1 0 Hymenobacter swuensis 0 1 1411621 species 1832 Hymenobacter sedentarius no rank 7557 0 2615202 5 Hymenobacter sp. DG25A 0 1 1385663 914 species Hymenobacter sp. DG25B 1158 species 1385664 1 0 species 2036 1356852 1 0 Hymenobacter sp. APR13 Hymenobacter sp. PAMC 26628 species 1855 0 1484118 1 1594 species 1 1484116 0 Hymenobacter sp. PAMC 26554 Rufibacter 1379908 4 1 0 25 genus 2488 Rufibacter tibetensis 1 512763 0 868 species 1595 no rank 0 2639626 2 1379909 1 0 828 species Rufibacter sp. DG15C Rufibacter sp. DG31D 0 1 1379910 species 767 2183 genus 15 1 0 3 323449 Pontibacter Pontibacter akesuensis 0 1 388950 1016 species Pontibacter korlensis 400092 1 0 1152 species 1 200667 4 1 0 2277 family Flammeovirgaceae Flammeovirga genus 1000 59739 2 1 0 3 997 no rank 1 2637820 0 997 species 1191459 1 0 Flammeovirga sp. MY04 0 1 340671 no rank 1276 Flammeovirgaceae bacterium 311 1276 species 1 1257021 0 0 1 1937968 3 4 family 978 Bernardetiaceae Bernardetia 1 1937972 2 0 1 974 genus species 973 0 999 1 Bernardetia litoralis 2762301 2 0 family 721 1 0 2 869806 9 genus 721 Marivirga species 712 1 1006 0 Marivirga tractuosa 31 1 0 89373 17 8170 family Cytophagaceae 787 genus 10 2 978 1 0 Cytophaga 777 species 985 1 0 Cytophaga hutchinsonii 952 genus 1 1 0 2 120831 Dyadobacter Dyadobacter fermentans 1 94254 0 951 species 1 0 861914 2 1 genus 538 Fibrella 2620963 1 0 no rank 537 537 species 0 1 1834519 Fibrella sp. ES10-3-2-2 Leadbetterella genus 985 319458 2 1 0 2 Leadbetterella byssophila 0 316068 1 983 species 1284 genus 7 1 0 2 105 Runella 1277 species 1 106 0 Runella slithyformis 3593 genus 11 0 1 107 6 Spirosoma 0 1 1211326 species 593 Spirosoma aerolatum Spirosoma rigui 611 species 564064 1 0 0 2057025 1 species 853 Spirosoma sp. HA7 species 743 1178516 1 0 Spirosoma montaniterrae Spirosoma radiotolerans 0 1379870 1 782 species class 19491042 66 200643 1 0 121 Bacteroidia 1 0 171549 56 1970 order 19487071 Bacteroidales 0 333046 4 no rank 11368241 1 511434 0 genus 552 0 511435 1 552 species Candidatus Azobacteroides pseudotrichonymphae 11367689 genus 909656 3 0 Bacteroides salanitronis 138224 species 1 376805 0 1 357276 0 1541935 species Bacteroides dorei 0 1 821 species 9687530 Bacteroides vulgatus 54818 family 7 1853231 2 1 0 Odoribacteraceae 54811 genus 1 283168 0 species 54811 0 28118 1 Odoribacter splanchnicus Prevotellaceae 19 1 0 11 171552 263736 family genus 263717 10 838 0 1 316 Prevotella 5325 no rank 0 1 2638335 Prevotella sp. oral taxon 299 0 652716 1 species 5325 Prevotella melaninogenica species 2476 0 28132 1 5083 species 1 52227 0 Prevotella dentalis 0 1 76123 4031 species Prevotella enoeca Prevotella denticola species 2743 0 1 28129 species 2891 0 589436 1 Prevotella fusca 1 1177574 0 2723 species Prevotella jejuni Prevotella intermedia 234601 species 1 28131 0 Prevotella ruminicola 839 1 0 3528 species 4 1 0 2005519 3 214386 family Barnesiellaceae Barnesiella 1 0 2 397864 176 genus 214382 species 214206 1 397865 0 Barnesiella viscericola Paludibacteraceae 2 2 2005523 1 0 1488 family 1 346096 0 genus 1486 Paludibacter propionicigenes 1486 species 185300 1 0 no rank 814 0 185291 1 Bacteroidales bacterium CF 1 1400053 0 814 species Bacteroidaceae 1 0 815 11 47 family 7122703 Bacteroides genus 7122656 0 1 10 816 124804 Bacteroides heparinolyticus 1 28113 0 73832 species 0 1 818 species 763414 Bacteroides thetaiotaomicron Bacteroides ovatus species 2981711 1 28116 0 Bacteroides fragilis 0 1 817 1297907 species Bacteroides zoogleoformans 0 1 28119 81618 species Bacteroides helcogenes 1 290053 0 98963 species 254930 species 1 246787 0 Bacteroides cellulosilyticus Bacteroides caccae 922475 species 47678 1 0 0 1796613 1 species 523002 Bacteroides caecimuris family 7084 1 0 4 171551 8 Porphyromonadaceae Porphyromonas genus 7076 3 836 1 0 10 Porphyromonas asaccharolytica 28123 1 0 species 936 Porphyromonas gingivalis 6130 species 0 837 1 0 2005520 5 7449 family Fermentimonas 0 1 1784836 2 1 genus 2352 Fermentimonas caenicola 2351 species 1 1562970 0 Petrimonas 2055 genus 4 1 0 2 307628 Petrimonas mucosa species 2051 0 1642646 1 genus 3042 0 1 294702 species 3042 1642647 1 0 Proteiniphilum saccharofermentans 221 0 1 2005525 7 395602 family Tannerellaceae Parabacteroides 1 0 3 375288 146 genus 366169 823 1 0 species 78759 Parabacteroides distasonis 287264 no rank 1 2649774 0 species 287264 1 2025876 0 Parabacteroides sp. CT06 Tannerella 183 3 195950 1 0 29212 genus Tannerella forsythia 28112 1 0 24817 species no rank 4212 0 2620507 1 0 712710 1 species 4212 Tannerella sp. oral taxon HOT-286 Rikenellaceae family 48780 1 0 5 171550 6 Mucinivorans 929 genus 4 2 1611681 1 0 0 1433126 1 species 925 Mucinivorans hirudinis 2 239759 1 0 52 genus 47845 Alistipes Alistipes finegoldii 214856 1 0 47793 species Marinilabiliales 1970189 9 1 0 2 order 3850 Marinifilaceae family 1136 0 1 1573805 2 1 1135 genus 0 1 2060722 1135 species 0 1717717 1 Marinifilaceae bacterium SPP2 835 family 1 558415 2 0 1 Marinilabiliaceae 834 genus 0 1193324 1 species 834 0 1 889453 Alkalitalea saponilacus 1970190 1 0 564 family genus 564 0 1970191 1 0 1307839 1 species 564 Salinivirga cyanobacteriivorans Prolixibacteraceae family 1313 1 0 1471398 3 4 Draconibacterium 1309 genus 6 2 1471399 0 1 species 1303 1 1168034 0 Draconibacterium orientale Sphingobacteriia 15908 class 12 0 1 24 117747 order 15896 23 200666 0 1 20 Sphingobacteriales Sphingobacteriaceae 15876 family 40 84566 22 0 1 29 6 84567 1 0 5418 genus Pedobacter 0 430522 1 1112 species Pedobacter steynii Pedobacter ginsengisoli 0 1 363852 994 species Pedobacter heparinus species 1136 984 1 0 0 1 2628915 1189 no rank Pedobacter sp. PACM 27299 1 1727164 0 species 1189 Pedobacter cryoconitis 958 species 0 188932 1 Mucilaginibacter 4 423349 1 0 19 genus 2412 1234841 1 0 474 species Mucilaginibacter sp. BJC16-A31 Mucilaginibacter gotjawali 0 1550579 1 1080 species no rank 839 0 1 2617802 0 1 1300914 species 839 Mucilaginibacter sp. PAMC 26640 1 84568 0 762 no rank Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 762 0 1 1986952 4817 genus 26 6 28453 1 0 Sphingobacterium 0 1010 1 935 species Sphingobacterium mizutaii 4 2609468 0 3856 no rank Sphingobacterium sp. G1-14 867 species 1 2003121 0 Sphingobacterium sp. ML3W 1 1538644 0 975 species Sphingobacterium sp. B29 0 1933220 1 970 species 743722 1 0 species 1044 Sphingobacterium sp. 21 6 2 1649482 0 1 1450 genus Pseudopedobacter Pseudopedobacter saltans species 1444 0 151895 1 1 1 0 929509 2 977 genus Solitalea Solitalea canadensis 0 1 995 976 species 54 1 0 140 117743 104356 class Flavobacteriia 0 1 200644 139 97 order 104302 Flavobacteriales Crocinitomicaceae 0 1 1853230 3 2 family 1108 Fluviicola genus 1106 332102 2 0 1 87 Fluviicola taffensis species 1019 0 191579 1 1260 family 0 39782 9 genus 1260 1 0 9 34098 20 Blattabacterium no rank 816 6 2647581 0 95 species 0 1 367806 Blattabacterium sp. (Blatta orientalis) 0 367488 1 86 species Blattabacterium sp. (Periplaneta americana) Blattabacterium sp. (Blaberus giganteus) 1 1186051 0 species 106 Blattabacterium sp. (Nauphoeta cinerea) 156 species 0 1316444 1 Blattabacterium sp. (Blattella germanica) 624186 1 0 201 species Blattabacterium sp. (Mastotermes darwiniensis) 0 1 39768 species 172 Blattabacterium cuenoti 0 1653831 1 species 178 Blattabacterium punctulatus species 246 1 164514 0 0 2762318 21 44993 family 1 1013 0 genus 340 Weeksella virosa species 340 0 1 1014 genus 25424 2 28250 1 0 209 Ornithobacterium 28251 1 0 25215 species Ornithobacterium rhinotracheale no rank 10691 10 2782232 0 genus 9893 9 59732 1 0 20 Chryseobacterium no rank 3364 0 2593645 3 1059 species 1 878220 0 Chryseobacterium sp. StRB126 Chryseobacterium sp. IHB B 17019 1721091 1 0 species 1234 species 1071 1 2015076 0 Chryseobacterium sp. T16E-39 1 1324352 0 species 1307 Chryseobacterium gallinarum species 783 558152 1 0 Chryseobacterium piperi 0 1685010 1 species 1048 Chryseobacterium glaciei Chryseobacterium indologenes 2189 species 1 253 0 Chryseobacterium camelliae 1182 species 0 1265445 1 0 1 2782228 798 genus 798 species 536441 1 0 Chryseobacterium taklimakanense genus 7089 6 308865 1 0 38 Elizabethkingia Elizabethkingia meningoseptica 0 1 238 1218 species species 836 0 1756150 1 Elizabethkingia genomosp. 4 species 1512 0 1 172045 Elizabethkingia miricola 0 1117645 1 2625 species Elizabethkingia anophelis Elizabethkingia genomosp. 3 0 1 1756149 860 species 0 1 2 34084 19 genus 1449 Riemerella 0 1 34085 species 1430 Riemerella anatipestifer 282 no rank 0 313602 2 0 336809 1 genus 221 Candidatus Sulcia muelleri 221 species 0 1 336810 61 genus 0 1 1940138 species 61 0 1 1415657 Candidatus Walczuchella monophlebidarum 422 family 1333713 2 0 267986 2 0 1 4 genus 422 Owenweeksia Owenweeksia hongkongensis 253245 1 0 species 418 family 55886 99 49546 0 1 2046 Flavobacteriaceae 3663 genus 5 1 0 6 52959 Polaribacter Polaribacter vadi 0 1774273 1 species 992 0 196858 3 no rank 1759 Polaribacter sp. MED152 species 553 0 1 313598 1 2058137 0 645 species Polaribacter sp. ALD11 Polaribacter sp. BM10 species 561 0 1529069 1 1 996801 0 species 907 Polaribacter reichenbachii Capnocytophaga 8796 genus 38 15 1016 1 0 0 1 28189 species 700 Capnocytophaga cynodegmi Capnocytophaga gingivalis species 424 1017 1 0 0 6 2640652 3615 no rank 0 1 1316596 529 species Capnocytophaga sp. oral taxon 878 species 503 1945657 1 0 Capnocytophaga sp. H2931 908 species 1 209053 0 Capnocytophaga sp. ChDC OS43 Capnocytophaga sp. oral taxon 323 1 1705617 0 species 525 608 species 0 1316593 1 Capnocytophaga sp. oral taxon 864 Capnocytophaga sp. H4358 542 species 0 1 1945658 species 504 0 1018 1 Capnocytophaga ochracea Capnocytophaga haemolytica 0 1 45243 512 species Capnocytophaga stomatis 0 1848904 1 species 652 Capnocytophaga sputigena 0 1 1019 species 894 Capnocytophaga canimorsus species 764 1 28188 0 species 693 0 1 327575 Capnocytophaga leadbetteri genus 848 261827 1 0 Algibacter alginicilyticus species 848 0 1736674 1 701 genus 1 2700084 0 Lutibacter sp. LPB0138 species 701 1850246 1 0 654 genus 1 178469 0 Arenibacter algicola 654 species 1 616991 0 0 1 358023 genus 571 1622118 1 0 species 571 Lutibacter profundi 511 genus 0 252306 1 Robiginitalea biformata species 511 0 252307 1 genus 597 1518147 1 0 597 species 0 1 1790137 Wenyingzhuangia fucanilytica Lacinutrix genus 1547 291183 4 0 1 1 1010 no rank 2647285 2 0 565 species 0 1 983544 Lacinutrix sp. 5H-3-7-4 0 1 2057808 species 445 Lacinutrix sp. Bg11-31 1486034 1 0 species 536 Lacinutrix venerupis Flavobacterium 1 0 237 9 11 genus 7553 1 996 0 1099 species Flavobacterium columnare 55197 1 0 587 species Flavobacterium branchiophilum Flavobacterium psychrophilum 0 96345 1 species 674 312277 1 0 613 species Flavobacterium indicum Flavobacterium gilvum 1492737 1 0 817 species 2495 species 986 1 0 Flavobacterium johnsoniae 0 1 1763534 species 599 Flavobacterium crassostreae Flavobacterium commune species 658 0 1306519 1 genus 568 0 336276 1 no rank 568 0 1 2615019 species 568 0 2058135 1 Olleya sp. Bg11-27 216431 1 0 444 genus Croceibacter atlanticus 444 species 0 1 313588 2 286104 0 genus 1005 1005 no rank 0 2615021 2 1936080 1 0 498 species Winogradskyella sp. J14-2 Winogradskyella sp. PG-2 507 species 0 1 754409 Aequorivita 2 0 1 2 153265 546 genus 0 1 101385 544 species Aequorivita sublithincola 0 83612 1 genus 462 Psychroflexus torquis species 462 0 57029 1 764 genus 1 112040 0 Zobellia galactanivorans species 764 1 63186 0 genus 536 0 2 225842 536 no rank 2644710 2 0 Formosa sp. Hel3_A1_48 213 species 0 1336795 1 0 1 1336794 species 323 Formosa sp. Hel1_33_131 2842 genus 3 5 252356 1 0 Maribacter 1178778 1 0 880 species Maribacter cobaltidurans 0 3 2615042 1959 no rank Maribacter sp. 1_2014MBL_MicDiv species 825 1 1644130 0 Maribacter sp. T28 653 species 1 1836467 0 Maribacter sp. HTCC2170 0 313603 1 481 species Tenacibaculum 0 1 104267 5 6 genus 2775 0 1 1850252 species 687 Tenacibaculum todarodis Tenacibaculum dicentrarchi 0 669041 1 species 508 0 1 584609 species 1117 Tenacibaculum jejuense Tenacibaculum maritimum 0 107401 1 457 species 393005 1 0 499 genus Tamlana sp. UJ94 2069432 1 0 499 species 0 389486 1 361 genus 0 1 2648869 no rank 361 0 1453352 1 species 361 Sediminicola sp. YIK13 1209327 1 0 genus 1038 species 1038 1 1803846 0 Flavivirga eckloniae genus 1311 4 326319 1 0 3 Dokdonia Dokdonia donghaensis 414 species 0 326320 1 894 no rank 2615033 2 0 Dokdonia sp. 4H-3-7-5 species 628 0 983548 1 Dokdonia sp. MED134 1 313590 0 266 species 41 0 1 5 76831 3036 genus Myroides Myroides profundi species 565 480520 1 0 no rank 1169 2 2642485 0 species 606 1458492 1 0 Myroides sp. ZB35 Myroides sp. A21 species 563 1583100 1 0 1261 species 76832 1 0 Myroides odoratimimus 2 1 0 104264 4 2348 genus Cellulophaga 735 species 0 76594 1 Cellulophaga baltica Cellulophaga algicola 59600 1 0 775 species species 836 0 979 1 Cellulophaga lytica 0 1 2 143222 1 genus 701 Salegentibacter 1 2633436 0 no rank 700 1 1729720 0 700 species Salegentibacter sp. T436 genus 2599 292691 5 0 1 6 Gramella species 692 0 1486245 1 Gramella flava 1 1913577 0 species 476 Gramella sp. LPB0144 Gramella forsetii 0 1 411153 species 505 920 species 1 2126553 0 Gramella sp. SH35 no rank 1450 61432 2 0 803 species 0 1 1150389 Flavobacteriaceae bacterium UJ101 Flavobacteriaceae bacterium 3519-10 species 647 0 1 531844 1 0 363408 5 2 genus 1530 Nonlabens Nonlabens dokdonensis species 416 328515 1 0 Nonlabens sediminis 381 species 0 1 319236 no rank 731 0 2615035 2 1 2058134 0 species 313 Nonlabens sp. MB-3u-79 418 species 0 1 1476901 Nonlabens sp. MIC269 610 genus 1 1649495 0 0 2622645 1 no rank 610 Seonamhaeicola sp. S2-3 0 1 1936081 species 610 771 genus 1 1204360 0 Siansivirga zeaxanthinifaciens species 771 1 762954 0 Zunongwangia genus 1016 1 0 417127 2 2 Zunongwangia profunda species 1014 398743 1 0 genus 237 0 1176327 1 no rank 237 2636237 1 0 Aureitalea sp. RR4-38 0 2094025 1 237 species 7 1 0 3 111500 950 genus Muricauda Muricauda lutaonensis 0 516051 1 species 467 Muricauda ruestringensis 476 species 0 111501 1 2 1755828 0 family 254 Ichthyobacterium genus 254 1 0 1755829 2 2 Ichthyobacterium seriolicida species 252 0 1 242600 48 6 1100069 1 0 3982 order Bacteroidetes Order II. Incertae sedis 20 1 0 563843 5 3934 family Rhodothermaceae 146918 1 0 765 genus 765 species 146919 1 0 Salinibacter ruber 1514 no rank 1196022 1 0 0 1779382 1 species 1514 Rhodothermaceae bacterium RA Rhodothermus 1635 genus 22 1 0 2 29548 0 1 29549 1613 species Rhodothermus marinus phylum 8793 0 1090 22 class 8793 191410 22 0 1 61 Chlorobia order 8732 191411 21 0 1 90 Chlorobiales Chlorobiaceae family 8642 1 0 191412 20 35 no rank 3518 274493 8 0 genus 1300 1 0 3 1099 5 Pelodictyon 1100 1 0 713 species Pelodictyon luteolum species 582 1 34090 0 Pelodictyon phaeoclathratiforme Chlorobium 1091 5 1 0 20 genus 2218 Chlorobium phaeovibrioides species 479 0 1094 1 Chlorobium phaeobacteroides species 789 0 1 1096 Chlorobium chlorochromatii 258 species 1 337090 0 Chlorobium limicola 1092 1 0 species 672 Chloroherpeton genus 595 0 1 100715 2 1 Chloroherpeton thalassium species 594 100716 1 0 5 1 0 5 1101 1723 genus Prosthecochloris no rank 1261 0 2632826 3 Prosthecochloris sp. HL-130-GSB 0 1 1974213 480 species Prosthecochloris sp. CIB 2401 1 1868325 0 281 species 500 species 281093 1 0 Prosthecochloris sp. GSB1 457 species 0 1 1102 Prosthecochloris aestuarii Chlorobaculum genus 2771 1 0 4 256319 16 Chlorobaculum tepidum 490 species 0 1 1097 1 274537 0 species 1200 Chlorobaculum limnaeum species 1065 274539 1 0 Chlorobaculum parvum 727 phylum 0 1930617 5 727 class 1 1962850 5 0 1 Calditrichae order 726 0 1 4 1962852 3 Calditrichales Calditrichaceae 723 family 18 3 1962854 1 0 genus 705 1 0 187144 2 1 Caldithrix Caldithrix abyssi 1 187145 0 704 species clade 315 4 2498710 0 67814 4 0 phylum 315 1 1 0 693071 4 315 class Caldisericia 3 693072 0 1 3 order 314 Caldisericales Caldisericaceae 1 2 693073 1 0 311 family 693074 1 0 310 genus Caldisericum exile 693075 1 0 species 310 no rank 442 0 2323 3 0 3 1783234 clade 442 0 1 95818 phylum 131 0 1 1895827 131 no rank Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 species 131 1 2056494 0 0 2 95901 311 clade 0 2497643 2 311 class 311 order 0 2497644 2 family 311 2 2497645 0 Candidatus Babela genus 311 0 1 2 1551504 10 Candidatus Babela massiliensis species 301 0 1 673862 clade 28074 1783257 94 0 9443 phylum 2 203682 35 1 0 Planctomycetes Planctomycetia 7079 class 49 1 0 203683 24 order 904 2691354 3 0 0 2 2691357 553 family 1 265488 0 241 genus 0 1 265606 species 241 Rhodopirellula baltica 312 genus 1 123 0 Pirellula staleyi 125 1 0 species 312 family 351 0 1 2691358 1676125 1 0 genus 351 0 1331910 1 species 351 Thermogutta terrifontis Planctomycetales 113 10 112 1 0 3650 order 1 0 126 9 11 family 3537 Planctomycetaceae Fuerstia 602 genus 9 1 0 1936111 2 Fuerstia marisgermanicae species 593 1891926 1 0 0 1 1649480 genus 444 0 1 120 species 444 Planctopirus limnophila 1 0 2 1649490 1 genus 512 Rubinisphaera 0 1 119 species 511 Rubinisphaera brasiliensis 118 3 0 1 10 genus 1968 Planctomyces 2 2648843 0 no rank 1958 species 830 1632864 1 0 Planctomyces sp. SH-PL14 1128 species 1636152 1 0 Planctomyces sp. SH-PL62 0 2691356 7 2004 order Isosphaeraceae 38 1 0 1763524 7 2004 family 492 genus 1 2 466152 1 0 Singulisphaera 491 species 0 466153 1 Singulisphaera acidiphila genus 1039 2 1763521 0 1 2 Paludisphaera Paludisphaera borealis 1037 species 1 1387353 0 Isosphaera 0 1 2 127 4 genus 435 Isosphaera pallida 431 species 0 128 1 0 2691355 3 order 472 1914233 3 1 0 2 family 472 Gemmataceae 3 2 113 0 1 470 genus Gemmata 2622970 1 0 467 no rank 467 species 1630693 1 0 Gemmata sp. SH-PL17 22 1 0 7 666505 2002 class Phycisphaerae 1 0 4 666506 28 order 938 Phycisphaerales Phycisphaeraceae family 910 666507 3 0 1 9 1 0 1 2 666508 901 genus Phycisphaera species 900 547188 1 0 Phycisphaera mikurensis 1042 order 0 2 2483366 1042 family 0 2483367 2 0 2483368 2 1042 genus Phycisphaerae bacterium ST-PulAB-D4 475 species 0 1 1941349 Phycisphaerae bacterium L21-RPul-D3 1 1940790 0 species 567 class 360 0 3 2517206 Candidatus Brocadiales 360 order 4 0 1 1127829 3 0 1127830 2 356 family Candidatus Kuenenia 1 0 1 380738 2 356 genus Candidatus Kuenenia stuttgartiensis 355 species 0 1 174633 Verrucomicrobia phylum 8501 0 1 74201 28 11 Verrucomicrobiae 0 1 6 203494 10 class 2817 5 48461 1 0 24 order 2807 Verrucomicrobiales Akkermansiaceae 29 0 1 4 1647988 2783 family Akkermansia 3 239934 1 0 12 genus 2754 0 1 1679444 1172 species Akkermansia glycaniphila Akkermansia muciniphila 1570 species 239935 1 0 60 class 0 2 134549 60 genus 5 2 134550 0 1 Candidatus Xiphinematobacter 2648876 1 0 55 no rank 0 1 1704307 species 55 Candidatus Xiphinematobacter sp. Idaho Grape Opitutae 51 414999 11 0 1 3649 class Puniceicoccales 0 1 3 415001 4 order 321 317 family 415002 2 0 317 genus 7 1 0 2 442430 Coraliomargarita Coraliomargarita akajimensis species 310 1 395922 0 Opitutales 3277 order 65 0 1 7 415000 Opitutaceae 134623 6 1 0 39 family 3212 0 278955 1 no rank 1270 1 794903 0 1270 species Opitutaceae bacterium TAV5 Opitutus genus 828 0 1 2 178440 3 1 107709 0 825 species Opitutus terrae Lacunisphaera 2 1961799 1 0 14 genus 1075 Lacunisphaera limnophila 0 1 1838286 1061 species 1618 no rank 0 2 417295 Verrucomicrobia bacterium IMCC26134 0 1 1637999 species 833 Verrucomicrobia bacterium 1 2026799 0 785 species 2 1955630 6 1 0 346 class Methylacidiphilae Methylacidiphilales 1 5 717963 0 1 344 order 2 717964 4 1 0 343 family Methylacidiphilaceae 1 0 1 511745 3 341 genus Methylacidiphilum Methylacidiphilum fumariolicum 0 591154 1 175 species 165 species 0 511746 1 Methylacidiphilum infernorum 0 23 204428 phylum 1825 0 1 23 204429 2 class 1825 Chlamydiia 1194 order 6 0 1 13 51291 Chlamydiales family 1188 0 809 12 12 1113537 0 1188 no rank Chlamydia genus 1188 810 12 0 1 18 Chlamydia felis 83556 1 0 122 species 1457153 1 0 108 species Chlamydia gallinacea species 98 0 1 83560 Chlamydia muridarum 1 83554 0 species 133 Chlamydia psittaci 112 species 1 1457141 0 Chlamydia avium Chlamydia pecorum 67 species 1 85991 0 0 1 813 134 species Chlamydia trachomatis Chlamydia caviae 0 83557 1 72 species 83555 1 0 species 166 Chlamydia abortus Chlamydia suis 0 83559 1 59 species Chlamydia pneumoniae 83558 1 0 99 species Parachlamydiales 1 1963360 9 0 1 629 order Parachlamydiaceae 1 0 1 92713 5 358 family Candidatus Protochlamydia 1 0 2 282132 3 genus 157 Candidatus Protochlamydia naegleriophila 0 1 389348 154 species 200 genus 1 83551 2 1 0 Parachlamydia Parachlamydia acanthamoebae species 199 1 83552 0 family 140 0 92714 1 1 71666 0 genus 140 1 71667 0 species 140 Waddlia chondrophila 0 2 92712 family 130 Simkania 0 1 2 34093 3 genus 130 Simkania negevensis 0 83561 1 species 127 3 256845 0 7664 phylum Lentisphaeria 90 1313211 3 1 0 7664 class Victivallales 706 278082 2 1 0 7574 order no rank 6868 1 1674876 0 Victivallales bacterium CCUG 44730 6868 species 0 1 2094242 641 phylum 134625 5 0 641 class 7 1 0 1921781 5 Kiritimatiellae 5 1921782 4 1 0 634 order Kiritimatiellales Kiritimatiellaceae 629 family 1 1 0 1921783 3 628 genus 25 1 0 1921784 2 Kiritimatiella species 603 1307763 1 0 Kiritimatiella glycovorans 8 200930 0 phylum 2343 Deferribacteres 13 1 0 8 68337 2343 class 25 191393 7 1 0 2330 order Deferribacterales Deferribacteraceae family 2305 0 1 191394 6 24 3 1 0 53572 2 643 genus Deferribacter Deferribacter desulfuricans 0 197162 1 640 species 0 117999 1 genus 683 Denitrovibrio acetiphilus 0 118000 1 species 683 genus 471 0 545865 1 Calditerrivibrio nitroreducens 471 species 0 477976 1 1 2351 0 genus 484 484 species 2352 1 0 Flexistipes sinusarabici 4467 phylum 0 23 200783 class 4467 0 1 187857 23 5 Aquificae 2 0 1 19 32069 3773 order Aquificales family 1854 64898 11 0 1 2 Aquificaceae genus 260 0 75905 2 Thermocrinis albus 0 136094 1 species 98 0 75906 1 species 162 Thermocrinis ruber 939 1 0 genus 147 0 1 940 147 species Hydrogenobacter thermophilus Hydrogenobaculum 1306 genus 24 168657 6 0 1 1282 no rank 0 2622382 5 0 1 547144 species 278 Hydrogenobaculum sp. HO 0 547146 1 species 278 Hydrogenobaculum sp. SN Hydrogenobaculum sp. 3684 species 278 547143 1 0 Hydrogenobaculum sp. SHO species 278 1 547145 0 1 380749 0 170 species Hydrogenobaculum sp. Y04AAS1 2713 1 0 139 genus Aquifex aeolicus 63363 1 0 species 139 5 0 1 6 224027 1536 family Hydrogenothermaceae 1 1 0 2 182899 568 genus Persephonella 1 309805 0 567 species Persephonella marina 1 3 212790 0 1 963 genus Sulfurihydrogenibium Sulfurihydrogenibium azorense 361 species 1 309806 0 2619248 1 0 601 no rank species 601 0 1 436114 Sulfurihydrogenibium sp. YO3AOP1 381 no rank 1 90150 0 412592 1 0 genus 381 Thermosulfidibacter takaii 412593 1 0 381 species Desulfurobacteriales 689 order 4 3 1485951 1 0 2 558314 0 family 685 435 genus 1 64159 0 0 1 64160 435 species Desulfurobacterium thermolithotrophum 0 171868 1 genus 250 250 species 228745 1 0 Thermovibrio ammonificans phylum 1028 0 200940 7 Thermodesulfobacteria 1028 class 1 0 1 67799 7 1 0 1 188710 6 1027 order Thermodesulfobacteriales Thermodesulfobacteriaceae 1 0 188711 5 1 family 1026 250 genus 1 444090 0 0 1 1653476 species 250 Caldimicrobium thiodismutans 0 1740 2 genus 522 1 1295609 0 species 338 Thermodesulfobacterium geofontis Thermodesulfobacterium commune species 184 1741 1 0 genus 253 241192 1 0 Thermodesulfatator indicus 171695 1 0 253 species phylum 4540 0 12 508458 12 649775 1 0 43 class 4540 Synergistia Synergistales order 4497 1 0 11 649776 26 Synergistaceae 649777 10 1 0 92 family 4471 6 81461 2 0 1 491 genus Thermanaerovibrio 1 81462 0 species 485 Thermanaerovibrio acidaminovorans 393 genus 1 336260 0 species 393 336261 1 0 Thermovirga lienii Acetomicrobium genus 237 0 1 2 49894 1 Acetomicrobium mobile species 236 0 97477 1 Cloacibacillus 12 0 1 508459 2 2989 genus Cloacibacillus porcorum 2977 species 0 1 1197717 Aminobacterium 1 0 2 81466 3 genus 269 81468 1 0 266 species Aminobacterium colombiense phylum 41701 0 56 203691 Spirochaetia 180 1 0 203692 56 41701 class order 32463 0 1 136 40 521 Spirochaetales Spirochaetaceae 0 1 137 22 527 family 28372 Sphaerochaeta 0 1 399320 4 3 genus 2728 Sphaerochaeta globosa species 1111 0 1131703 1 Sphaerochaeta coccoides species 792 0 1 273376 Sphaerochaeta pleomorpha 1131707 1 0 species 822 genus 21117 157 12 0 1 905 Treponema Treponema putidum 0 221027 1 species 3156 409322 1 0 species 508 Treponema pedis species 103 160 1 0 Treponema pallidum 2459 no rank 0 2638727 1 Treponema sp. OMZ 838 1 1539298 0 species 2459 Treponema primitia species 843 88058 1 0 Treponema succinifaciens 1 167 0 species 7658 Treponema azotonutricium species 916 0 1 150829 species 1958 0 81028 1 Treponema brennaborense Treponema paraluiscuniculi 53435 1 0 species 100 Treponema denticola 158 1 0 1588 species Treponema caldarium species 923 0 215591 1 1 1616789 0 976 genus 0 1307761 1 976 species Salinispira pacifica Spirochaeta 6 1 0 146 3 1858 genus species 827 0 46355 1 Spirochaeta africana Spirochaeta thermophila 1025 species 0 1 154 1911556 1 0 genus 1166 Sediminispirochaeta smaragdinae 0 1 55206 1166 species Borreliaceae family 3570 1 0 1643685 17 6 64895 8 1 0 185 genus 1477 Borreliella Borreliella garinii species 366 0 29519 1 species 188 29518 1 0 Borreliella afzelii 168 species 664662 1 0 Borreliella bavariensis Borrelia mayonii 0 1674146 1 145 species Borreliella bissettii 1 64897 0 155 species Borreliella valaisiana species 119 0 1 62088 Borreliella burgdorferi 151 species 0 1 139 Borrelia genus 2087 1 0 138 8 40 species 462 0 47466 1 Borrelia miyamotoi Borrelia recurrentis 265 species 0 1 44449 species 272 0 1 40834 Borrelia duttonii Borrelia hermsii 0 140 1 species 303 Borrelia parkeri species 203 0 141 1 Borrelia turicatae 142 1 0 292 species Borrelia anserina species 250 143 1 0 order 2824 0 8 1643688 Leptospiraceae 1 0 8 170 6 family 2824 2495 genus 4 1 0 6 171 Leptospira species 421 0 1 28452 Leptospira alstonii Leptospira biflexa 0 1 172 356 species species 1027 0 1 173 Leptospira interrogans 1 28183 0 species 307 Leptospira santarosai Leptospira borgpetersenii 380 species 0 174 1 338321 1 0 genus 323 Turneriella parva 1 29510 0 323 species order 6234 1643686 7 0 1 5 Brachyspirales Brachyspiraceae 0 1 6 143786 39 family 6229 Brachyspira 48 0 1 29521 5 6190 genus Brachyspira hyodysenteriae 1181 species 0 1 159 0 52584 1 species 2834 Brachyspira pilosicoli Brachyspira intermedia 1170 species 0 84377 1 Brachyspira murdochii 84378 1 0 species 957 200918 42 0 phylum 11447 Thermotogae class 11447 42 188708 1 0 11 7 0 1 1643947 7 2734 order Petrotogales 1643949 6 0 family 2727 1511648 1 0 425 genus species 425 0 1006576 1 Defluviitoga tunisiensis 419 genus 2 2 28236 0 1 Petrotoga Petrotoga mobilis 1 69499 0 417 species Marinitoga 1883 genus 15 3 160798 1 0 no rank 939 2640159 1 0 Marinitoga sp. 1137 0 1 1545835 939 species species 929 149715 1 0 Marinitoga piezophila Thermotogales 7655 order 6 1 0 2419 28 3118 family 8 1 0 10 1643950 Fervidobacteriaceae Fervidobacterium genus 1181 1 0 4 2422 2 species 316 1 2423 0 Fervidobacterium islandicum 1 93466 0 species 603 Fervidobacterium pennivorans 260 species 0 2424 1 Fervidobacterium nodosum Thermosipho 3 5 2420 0 1 1929 genus 0 2 2676525 829 no rank Thermosipho sp. 1063 1462747 1 0 408 species Thermosipho sp. 1070 species 421 0 1 1437364 Thermosipho africanus 0 1 2421 586 species Thermosipho melanesiensis 46541 1 0 511 species family 4531 188709 17 0 1 32 Thermotogaceae Thermotoga 2335 11 1 0 63 genus 3216 1 2336 0 230 species Thermotoga maritima no rank 1273 0 4 2631113 Thermotoga sp. 2812B species 282 1157948 1 0 304 species 1 126740 0 Thermotoga sp. RQ2 Thermotoga sp. Cell2 0 1157947 1 292 species species 395 126738 1 0 Thermotoga sp. RQ7 species 316 0 93929 1 Thermotoga petrophila Thermotoga profunda 1508420 1 0 species 330 Thermotoga caldifontis 1508419 1 0 species 276 Thermotoga naphthophila 1 93930 0 323 species Thermotoga neapolitana species 405 0 1 2337 0 1 5 1643951 33 genus 1283 Pseudothermotoga 332 species 0 57487 1 Pseudothermotoga hypogea Pseudothermotoga lettingae 0 177758 1 species 335 38322 1 0 342 species Pseudothermotoga elfii 0 119394 1 species 241 Pseudothermotoga thermarum 1047 order 3 0 1 6 1643946 Kosmotogales 8 5 1643948 1 0 1044 family Kosmotogaceae 0 1 1184396 2 2 genus 325 Mesotoga 323 species 1184387 1 0 Mesotoga prima 711 genus 651456 2 0 Kosmotoga olearia 651457 1 0 344 species 367 species 1330330 1 0 Kosmotoga pacifica phylum 190 0 2138240 1 class 190 0 1 2138243 1 2138246 0 190 order 2138247 1 0 190 family genus 190 68335 1 0 Coprothermobacter proteolyticus 35786 1 0 190 species Elusimicrobia phylum 1497 74152 10 0 1 1 99260 1 0 no rank 309 uncultured Termite group 1 bacterium species 309 167965 1 0 0 447830 5 885 class Endomicrobiales 2 5 1783344 1 0 885 order 3 4 1783343 1 0 883 family Endomicrobiaceae 880 genus 3 0 1 3 1408194 Endomicrobium Endomicrobium proavitum 1408281 1 0 593 species Candidatus Endomicrobium trichonymphae 284 species 0 1 1408204 Elusimicrobia 0 1 641853 3 1 class 302 0 2 641854 301 order family 301 2 641876 1 0 4 Elusimicrobiaceae 297 genus 0 423604 1 Elusimicrobium minutum species 297 0 423605 1