members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 7416629 4645 22460 31 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 0 name 1 0 superkingdom 2157 0 34619 265 28890 Euryarchaeota 1 phylum 30910 217 3 0 707 10 0 183980 class Archaeoglobales 1 order 2231 0 707 10 1 706 9 1 0 2232 1 Archaeoglobaceae family 1 159 0 54260 genus 159 1 0 54261 Ferroglobus placidus species 2233 genus Archaeoglobus 1 5 1 336 0 0 1 88 species Archaeoglobus fulgidus 2234 0 1 148 species Archaeoglobus sulfaticallidus 1316941 25 1 0 84156 Archaeoglobus profundus species 58290 Archaeoglobus veneficus species 74 1 0 genus 190818 0 210 2 Geoglobus acetivorans species 565033 0 108 1 113653 species Geoglobus ahangari 1 102 0 5801 40 0 2283794 clade class 1 Methanobacteria 183925 0 25 1 3244 1 24 3243 0 2158 order Methanobacteriales 1 0 1 76 family 2178 76 1 0 2179 genus 0 76 1 Methanothermus fervidus species 2180 0 3166 2 22 1 Methanobacteriaceae family 2159 2160 Methanobacterium 1 genus 1174 2 8 0 153 1 0 877455 Methanobacterium lacus species 868131 species Methanobacterium paludis 1 203 0 0 131 1 Methanobacterium formicicum species 2162 0 1 161 species Methanobacterium subterraneum 59277 0 350 2 no rank 2627676 1379702 species Methanobacterium sp. MB1 1 162 0 1 188 0 1911685 species Methanobacterium sp. MZ-A1 0 1 174 species Methanobacterium congolense 118062 1 293 0 2316 genus Methanosphaera stadtmanae species 2317 0 293 1 1528 4 7 0 2172 1 Methanobrevibacter genus 2173 Methanobrevibacter smithii species 361 1 0 Methanobrevibacter millerae species 230361 0 239 1 83816 species Methanobrevibacter ruminantium 1 258 0 294671 Methanobrevibacter olleyae species 211 1 0 no rank 2638681 0 2 455 Methanobrevibacter sp. AbM4 species 224719 0 248 1 207 1 0 1609968 Methanobrevibacter sp. YE315 species 4 5 169 0 145260 genus Methanothermobacter 1 64 1 0 145263 Methanothermobacter marburgensis species 0 36 1 Methanothermobacter wolfeii species 145261 0 1 30 species Methanothermobacter thermautotrophicus 145262 no rank 2631116 0 35 1 1 35 0 866790 species Methanothermobacter sp. CaT2 183939 class 1 Methanococci 15 3 2557 0 order 2182 0 2554 14 family 2183 0 5 1500 genus 2184 0 1302 4 Methanococcus aeolicus species 42879 0 101 1 1 177 0 2187 species Methanococcus vannielii 844 1 0 39152 Methanococcus maripaludis species 1 180 0 2188 species Methanococcus voltae 0 1 198 genus 155862 Methanothermococcus okinawensis species 155863 0 198 1 1054 9 0 196117 family 794 2 7 0 196118 1 Methanocaldococcus genus 1 129 0 73913 species Methanocaldococcus vulcanius 2641196 no rank 1 181 0 644281 Methanocaldococcus sp. FS406-22 species 181 1 0 148 1 0 2190 Methanocaldococcus jannaschii species 110 1 0 83171 Methanocaldococcus fervens species 67760 Methanocaldococcus infernus species 53 1 0 1301915 Methanocaldococcus bathoardescens species 171 1 0 0 2 2 260 genus Methanotorris 1 196119 0 258 1 Methanotorris igneus species 2189 2283796 clade 2257 16 0 458 2 0 1803510 clade 2 458 0 379546 genus 0 361 1 no rank 2633939 673860 species Aciduliprofundum sp. MAR08-339 1 361 0 379547 species Aciduliprofundum boonei 1 97 0 183967 class Thermoplasmata 1 14 6 1799 0 7 802 0 2301 order 0 1 84 family 46630 genus 46631 0 1 84 species Picrophilus torridus 82076 0 1 84 0 2 115 family 46659 0 115 2 genus 2302 0 64 1 Thermoplasma volcanium species 50339 species Thermoplasma acidophilum 2303 0 1 51 family 1747776 0 1 104 genus 1747777 0 1 104 1673428 Cuniculiplasma divulgatum species 104 1 0 1 314 0 1919231 no rank 0 1 314 species Thermoplasmatales archaeon BRNA1 1054217 family 90142 0 2 185 74968 genus 185 2 0 97393 Ferroplasma acidarmanus species 69 1 0 74969 Ferroplasma acidiphilum species 116 1 0 1 414 0 1234666 no rank species methanogenic archaeon ISO4-H5 1495144 0 1 414 1 5 577 0 1235850 order 1 Methanomassiliicoccales family 2517203 0 228 2 genus Candidatus Methanomethylophilus 1 1291539 0 2 5 228 223 1 0 1291540 Candidatus Methanomethylophilus alvus species family 1577788 0 2 348 0 109 1 genus 1607807 0 1 109 species Candidatus Methanoplasma termitum 1577791 1080709 genus 239 1 0 1 239 0 1406512 species Candidatus Methanomassiliicoccus intestinalis 0 41 6 3963 class 1 Thermococci 183968 0 2 40 3957 order 1 Thermococcales 2258 0 11 39 3955 family Thermococcaceae 1 2259 3355 33 29 0 2263 1 Thermococcus genus 121 1 0 49899 Thermococcus profundus species 0 1 172 species Thermococcus piezophilus 1712654 187878 Thermococcus gammatolerans species 105 1 0 1 107 0 195522 species Thermococcus nautili 311400 Thermococcus kodakarensis species 105 1 0 6 698 0 2627626 no rank 1 153 0 1042877 species Thermococcus sp. 4557 0 1 119 species Thermococcus sp. EXT12c 2016361 species Thermococcus sp. AM4 246969 0 1 123 Thermococcus sp. P6 species 122420 0 24 1 0 150 1 Thermococcus sp. 5-4 species 2008440 129 1 0 1674923 Thermococcus sp. 2319x1 species 0 146 1 Thermococcus sibiricus species 172049 54077 species Thermococcus barossii 1 84 0 species Thermococcus chitonophagus 54262 0 1 63 342948 Thermococcus onnurineus species 97 1 0 0 1 156 species Thermococcus litoralis 2265 71997 Thermococcus gorgonarius species 88 1 0 71998 species Thermococcus pacificus 1 57 0 0 180 1 Thermococcus paralvinellae species 582419 1 148 0 163003 species Thermococcus cleftensis 72803 species Thermococcus siculi 1 170 0 88 1 0 53952 Thermococcus peptonophilus species 1505907 Thermococcus eurythermalis species 172 1 0 Thermococcus radiotolerans species 187880 0 95 1 Thermococcus thioreducens species 277988 0 91 1 species Thermococcus guaymasensis 110164 0 1 154 0 133 1 Thermococcus barophilus species 55802 Thermococcus celer species 2264 0 92 1 0 1 128 genus 83867 971279 species Palaeococcus pacificus 1 128 0 0 8 5 461 genus Pyrococcus 1 2260 Pyrococcus yayanosii species 1008460 0 100 1 1 30 0 53953 species Pyrococcus horikoshii species Pyrococcus kukulkanii 1609559 0 1 52 0 2 117 no rank 2629106 24 1 0 342949 Pyrococcus sp. NA2 species 1183377 Pyrococcus sp. ST04 species 93 1 0 1 83 0 2261 species Pyrococcus furiosus 0 1 74 species Pyrococcus abyssi 29292 0 109 18179 clade 2290931 Methanomicrobia 1 class 224756 0 9589 47 30 2445 10 16 0 2191 1 Methanomicrobiales order 6 6 1053 0 2194 family 1 Methanomicrobiaceae 1 Methanoculleus genus 45989 0 782 4 28 2198 Methanoculleus marisnigri species 200 1 0 363 1 0 83986 Methanoculleus bourgensis species no rank 2619537 0 191 1 86622 species Methanoculleus sp. MAB1 1 191 0 genus 230355 0 265 1 265 1 0 54120 Methanolacinia petrolearia species 0 233 1 family 196137 1 233 0 2202 genus 0 233 1 Methanospirillum hungatei species 2203 family 88404 0 2 241 241 2 1 0 2192 Methanocorpusculum 1 genus 83984 species Methanocorpusculum labreanum 1 240 0 family Methanoregulaceae 1 1198451 0 8 6 908 414 2 2 0 475087 1 Methanosphaerula genus Methanosphaerula palustris species 475088 0 412 1 486 5 3 0 395331 Methanoregula 1 genus Methanoregula boonei species 358766 0 232 1 249 1 0 882104 Methanoregula formicica species 4 25 535 0 570264 order Methanocellales 1 510 3 0 570265 family genus 1 Methanocella 570266 0 3 10 510 112 1 0 1175444 Methanocella conradii species 0 388 1 Methanocella arvoryzae species 1175445 Methanosarcinales 1 order 94695 0 6579 26 10 6229 22 9 0 2206 1 Methanosarcinaceae family 222 1 0 196136 genus 1 222 0 39669 species Methanosalsum zhilinae genus 2220 0 175 1 175 1 0 420950 Methanolobus psychrophilus species genus 2225 0 441 2 1 210 0 29291 species Methanococcoides burtonii Methanococcoides methylutens species 2226 0 231 1 genus 2175 0 2 415 2176 Methanohalophilus mahii species 219 1 0 1 196 0 2177 species Methanohalophilus halophilus 2207 genus Methanosarcina 1 14 13 4507 0 2644672 no rank 4 1040 0 0 225 1 Methanosarcina sp. WH1 species 1434102 0 1 203 species Methanosarcina sp. MTP4 1434100 0 402 1 Methanosarcina sp. Kolksee species 1434099 species Methanosarcina sp. WWM596 1434103 0 1 210 418008 Methanosarcina horonobensis species 393 1 0 0 1 355 species Methanosarcina siciliae 38027 2210 species Methanosarcina thermophila 1 275 0 species Methanosarcina acetivorans 2214 0 1 237 1 512 0 2209 species Methanosarcina mazei species Methanosarcina lacustris 170861 0 1 265 species Methanosarcina vacuolata 2215 0 1 400 0 1 1016 species Methanosarcina barkeri 2208 0 1 289 genus 101191 101192 Methanomethylovorans hollandica species 289 1 0 171 1 0 2321 genus 1 171 0 2322 species Methanohalobium evestigatum 143067 family Methanosaetaceae 1 2 3 340 0 2222 genus 2 338 0 1 159 0 2223 species Methanothrix soehngenii species Methanosaeta harundinacea 301375 0 1 179 8590 28 62 0 183963 Halobacteria 1 class 2235 order 1 Halobacteriales 24 33 3411 0 family Halobacteriaceae 1 2236 0 8 56 1122 genus 1980514 0 1 117 1873524 Halodesulfurarchaeum formicicum species 117 1 0 165 1 0 1656823 genus 0 1 165 species Halanaeroarchaeum sulfurireducens 1604004 0 4 8 605 genus 1 Halobacterium 2239 1 216 0 2668073 no rank 751944 species Halobacterium sp. DL1 1 216 0 Halobacterium salinarum species 2242 0 171 1 0 1 210 species Halobacterium hubeiense 1407499 0 1 179 genus 332246 179 1 0 413810 Halalkalicoccus jeotgali species 2256 14 15 0 1963268 1 Haloarculaceae family genus 203135 0 1 220 1 220 0 57705 species Halomicrobium mukohataei 146825 genus 1 Halorhabdus 3 1 347 0 430914 Halorhabdus tiamatea species 113 1 0 0 1 233 species Halorhabdus utahensis 146826 63743 genus Natronomonas 1 2 3 308 0 0 133 1 Natronomonas moolapensis species 416273 Natronomonas pharaonis species 2257 0 173 1 0 224 2 2 Halorientalis 1 genus 1073987 1 222 0 2648975 no rank species Halorientalis sp. IM1011 1932360 0 1 222 5 16 1143 0 2237 genus Haloarcula 1 1 294 0 2238 species Haloarcula marismortui 1932004 Haloarcula taiwanensis species 240 1 0 2624677 no rank 1 321 0 1 321 0 1592728 species Haloarcula sp. CBA1115 Haloarcula hispanica species 51589 0 272 1 1644060 1 Natrialbales order 2568 26 19 0 42 18 2542 0 1644061 family 1 Natrialbaceae 0 1 2 195 genus 1 Natronococcus 29287 0 194 1 Natronococcus occultus species 29288 genus 387342 0 1 286 Halopiger xanaduensis species 387343 0 286 1 333 2 2 0 203193 1 Halobiforma genus 0 1 331 species Halobiforma lacisalsi 229731 63742 Natrialba 1 genus 215 2 2 0 13769 species Natrialba magadii 1 213 0 1269201 genus Salinarchaeum 1 2 5 235 0 no rank 2621923 0 230 1 1333523 species Salinarchaeum sp. Harcht-Bsk1 1 230 0 133 1 0 353799 genus species Halostagnicola larsenii 353800 0 1 133 127 1 0 2256 genus 0 127 1 Natronobacterium gregoryi species 44930 454 3 1 0 121871 Haloterrigena 1 genus 0 1 159 species Haloterrigena daqingensis 588898 0 294 1 Haloterrigena turkmenica species 62320 genus Natrinema 1 88723 0 5 3 522 no rank 2622230 0 1 306 306 1 0 406552 Natrinema sp. J7-2 species 0 1 211 species Natrinema pellirubrum 69525 2583 18 22 0 1644055 Haloferacales 1 order no rank 2678336 0 1 211 halophilic archaeon DL31 species 756883 0 211 1 1644056 family 1 Haloferacaceae 5 8 1393 0 176 1 0 293431 genus Haloquadratum walsbyi species 293091 0 176 1 14 4 1064 0 2251 genus 1 Haloferax 0 1 349 species Haloferax volcanii 2246 379 1 0 35746 Haloferax gibbonsii species 1 322 0 2252 species Haloferax mediterranei genus Halogeometricum 1 60846 0 2 1 148 0 147 1 Halogeometricum borinquense species 60847 family Halorubraceae 1 1963271 0 8 19 957 genus Halorubrum 1 56688 0 9 3 392 2247 species Halorubrum lacusprofundi 1 200 0 Halorubrum trapanicum species 29284 0 183 1 1644057 1 Salinigranum genus 350 2 1 0 species Salinigranum rubrum 755307 0 1 349 Halopenitus 1 genus 1209988 0 196 2 1 species Halopenitus persicus 1048396 0 1 195 clade 1783276 0 1 65 65 1 0 1801631 phylum 65 1 0 2490204 genus 65 1 0 1920749 Candidatus Micrarchaeota archaeon Mia14 species 1783275 clade 3644 47 0 0 1 49 phylum 51967 498845 genus 1 49 0 species Candidatus Korarchaeum cryptofilum 498846 0 1 49 0 10 825 phylum 651137 class 1643678 0 245 4 order 1968909 0 2 80 1968910 family Candidatus Nitrosocaldaceae 1 1 2 80 0 498374 genus 79 1 0 1 79 0 2045011 species Candidatus Nitrosocaldus islandicus 2 165 0 1033996 order 0 165 2 family 1033997 0 1 2 165 genus 1 Nitrososphaera 497726 species Nitrososphaera viennensis 1034015 0 1 164 651142 no rank 3 316 0 0 2 151 genus 1825023 Candidatus Nitrosotenuis cloacae species 1603555 0 84 1 1846278 Candidatus Nitrosotenuis sp. AQ6f species 67 1 0 genus 1593364 0 1 165 1410606 species Candidatus Nitrosopelagicus brevis 1 165 0 31932 order 264 3 0 3 264 0 338190 family genus 338191 0 201 2 0 76 1 Candidatus Nitrosopumilus sediminis species 1229909 0 1 125 species Candidatus Nitrosopumilus adriaticus 1580092 0 63 1 genus 1993653 1898749 species Candidatus Nitrosomarinus catalina 1 63 0 0 36 2770 phylum 28889 183924 class Thermoprotei 1 36 2 2770 0 871006 order 170 3 0 1 57 0 871007 family 1 57 0 105850 genus 57 1 0 242703 Acidilobus saccharovorans species 255472 Caldisphaeraceae 1 family 113 1 2 0 genus 200414 0 1 112 200415 Caldisphaera lagunensis species 112 1 0 2266 order 12 640 0 114378 1 Thermofilaceae family 310 1 5 0 309 4 0 2268 genus 82 1 0 1365176 Thermofilum adornatus species 1550241 species Thermofilum uzonense 1 80 0 73 1 0 2269 Thermofilum pendens species 1483572 Thermofilum carboxyditrophus species 74 1 0 1 Thermoproteaceae family 2267 0 330 7 7 genus 76886 0 71 1 Caldivirga maquilingensis species 76887 0 71 1 0 1 50 genus 2276 50 1 0 2277 Pyrobaculum islandicum species genus 164450 0 2 80 0 34 1 Vulcanisaeta distributa species 164451 Vulcanisaeta moutnovskia species 985052 0 46 1 0 122 2 genus 2270 2271 species Thermoproteus tenax 1 87 0 184117 species Thermoproteus uzoniensis 1 35 0 8 1384 0 2281 order 8 1384 0 118883 family 0 97 2 genus 41980 43687 Metallosphaera sedula species 67 1 0 1006005 species Metallosphaera cuprina 1 30 0 0 346 1 genus 12914 Acidianus hospitalis species 563177 0 346 1 1 144 0 2100760 genus 2287 species Sulfolobus solfataricus 1 144 0 2284 genus 546 3 0 species Sulfolobus acidocaldarius 2285 0 1 122 43080 species Sulfolobus islandicus 1 246 0 2641160 no rank 178 1 0 Sulfolobus sp. A20 species 1891280 0 178 1 1 251 0 69655 genus Sulfolobus tokodaii species 111955 0 251 1 114380 Desulfurococcales 1 order 574 21 12 0 family 2272 0 8 309 genus 54258 0 2 46 54259 species Ignicoccus islandicus 1 35 0 11 1 0 160233 Ignicoccus hospitalis species 1 42 0 477695 genus 42 1 0 1200300 Thermogladius calderae species genus 2279 0 55 2 0 22 1 Staphylothermus hellenicus species 84599 Staphylothermus marinus species 2280 0 33 1 2273 genus 2 49 0 35 1 0 94694 Desulfurococcus amylolyticus species Desulfurococcus mucosus species 2275 0 14 1 1 117 0 54253 genus 117 1 0 54254 Thermosphaera aggregans species 2307 family 3 244 0 genus 2308 0 1 126 1 126 0 1273541 species Pyrodictium delaneyi 1 53 0 54247 genus 1 53 0 54248 species Hyperthermus butylicus 0 1 65 genus 54251 0 65 1 Pyrolobus fumarii species 54252 2 Bacteria 1 superkingdom 7359550 4348 61 0 1930617 phylum 747 2 0 2 747 0 1962850 class 1 Calditrichales order 1962852 0 747 2 2 1 745 0 1962854 family 1 745 0 187144 genus species Caldithrix abyssi 187145 0 1 745 1679 4775515 0 1783272 clade 0 35 17292 phylum 1297 188787 1 Deinococci class 17292 124 35 0 0 143 15 10818 order Deinococcales 1 118964 family Deinococcaceae 1 183710 0 61 14 10675 10614 115 13 0 1298 1 Deinococcus genus 1 755 0 432329 species Deinococcus peraridilitoris Deinococcus proteolyticus species 55148 0 1044 1 species Deinococcus soli Cha et al. 2016 1309411 0 1 1009 species Deinococcus radiodurans 1299 0 1 844 502394 Deinococcus gobiensis species 1027 1 0 894 1 0 310783 Deinococcus deserti species Deinococcus maricopensis species 309887 0 664 1 0 1 723 species Deinococcus puniceus 1182568 1 862 0 2623546 no rank 862 1 0 2080419 Deinococcus sp. NW-56 species Deinococcus actinosclerus species 1768108 0 896 1 1113 1 0 1182571 Deinococcus swuensis species species Deinococcus geothermalis 68909 0 1 668 641 2 0 2762275 order 2 641 0 332247 family 0 4 2 641 genus 1 Truepera 332248 637 1 0 332249 Truepera radiovictrix species 0 5709 17 64 1 Thermales order 68933 188786 family Thermaceae 1 14 16 5645 0 208447 genus 1 Oceanithermus 2 1 759 0 758 1 0 187137 Oceanithermus profundus species genus 1 Meiothermus 65551 0 5 3 1285 0 561 1 Meiothermus silvanus species 52022 0 1 719 species Meiothermus ruber 277 genus Thermus 1 270 0 53 8 3232 0 392 1 no rank 2619321 Thermus sp. CCB_US3_UF1 species 1111069 0 392 1 species Thermus parvatiensis 456163 0 1 352 929 1 0 274 Thermus thermophilus species 0 461 1 Thermus aquaticus species 271 56957 species Thermus oshimai 1 413 0 Thermus brockianus species 56956 0 299 1 species Thermus scotoductus 37636 0 1 333 genus 1 Marinithermus 186191 0 2 5 355 1 350 0 186192 species Marinithermus hydrothermalis 0 3937775 704 118 1 Firmicutes phylum 1239 91061 1 Bacilli class 365606 180 423 0 1 Bacillales order 1385 0 198605 260 419 8 3696 0 539002 no rank 0 2818 7 no rank 539742 33986 genus Exiguobacterium 1 64 7 2818 0 0 1 439 species Exiguobacterium sibiricum 332410 0 1 586 species Exiguobacterium antarcticum 132920 2644629 no rank 4 1729 0 Exiguobacterium sp. MH3 species 1399115 0 434 1 0 429 1 Exiguobacterium sp. ZWU0009 species 1224749 432 1 0 1849031 Exiguobacterium sp. U13-1 species 0 1 434 species Exiguobacterium sp. AT1b 360911 no rank 539738 0 878 1 1378 genus 1 878 0 878 1 0 2624949 no rank 1785995 Gemella sp. oral taxon 928 species 878 1 0 186824 Thermoactinomycetaceae 1 family 596 4 1 0 30 1 0 292635 Laceyella genus 1677050 Novibacillus 1 genus 565 24 2 0 0 1 541 species Novibacillus thermophilus 1471761 0 20345 40 391 Staphylococcaceae 1 family 90964 1 290 0 2005363 genus 0 290 1 Auricoccus indicus species 1849491 16932 192 33 0 1279 1 Staphylococcus genus Staphylococcus xylosus species 1288 0 680 1 1294 species Staphylococcus muscae 1 203 0 0 1 234 species Staphylococcus lutrae 155085 species Staphylococcus pettenkoferi 170573 0 1 270 1282 Staphylococcus epidermidis species 1101 1 0 214473 species Staphylococcus nepalensis 1 438 0 0 1 606 species Staphylococcus equorum 246432 species Staphylococcus agnetis 985762 0 1 287 Staphylococcus sciuri species 1296 0 432 1 0 671 1 Staphylococcus haemolyticus species 1283 855 1 0 45972 Staphylococcus pasteuri species 0 501 1 Staphylococcus stepanovicii species 643214 1 527 0 1281 species Staphylococcus carnosus 1 597 0 29385 species Staphylococcus saprophyticus 1 465 0 46127 species Staphylococcus felis 1 374 0 308354 species Staphylococcus simiae Staphylococcus cohnii species 29382 0 533 1 Staphylococcus hominis species 1290 0 415 1 1 552 0 70255 species Staphylococcus condimenti 1295 Staphylococcus schleiferi species 509 1 0 Staphylococcus lugdunensis species 28035 0 364 1 615 1 0 91994 no rank 615 1 0 1715860 Staphylococcus sp. AntiMn-1 species 403 1 0 1292 Staphylococcus warneri species 1 472 0 70258 species Staphylococcus piscifermentans species Staphylococcus kloosii 29384 0 1 308 1284 species Staphylococcus hyicus 1 314 0 0 1 589 species Staphylococcus simulans 1286 473 1 0 283734 Staphylococcus pseudintermedius species Staphylococcus succinus species 61015 0 395 1 0 357 1 Staphylococcus argenteus species 985002 species Staphylococcus capitis 29388 0 1 449 1 1751 0 1280 species Staphylococcus aureus 69965 genus Macrococcus 1 19 4 1899 0 no rank 2619255 0 1 583 1 583 0 1898474 species Macrococcus sp. IME1552 species Macrococcus canis 1855823 0 1 628 69966 species Macrococcus caseolyticus 1 669 0 1 833 0 45669 genus species Salinicoccus halodurans 407035 0 1 833 186817 family Bacillaceae 1 116 164 87771 0 1211 2 0 45667 genus 0 681 1 Halobacillus mangrovi species 402384 1 530 0 1570 species Halobacillus halophilus genus 1 Fictibacillus 1329200 0 3 13 1487 species Fictibacillus phosphorivorans 1221500 0 1 736 species Fictibacillus arsenicus 255247 0 1 738 0 624 15 8295 genus Geobacillus 1 129337 species Geobacillus stearothermophilus 1422 0 1 802 0 1 472 species Geobacillus subterraneus 129338 species Geobacillus genomosp. 3 1921421 0 1 492 no rank 2642459 0 6 3000 691437 Geobacillus sp. C56-T3 species 434 1 0 352 1 0 1233873 Geobacillus sp. GHH01 species species Geobacillus sp. Y412MC52 550542 0 1 467 614 1 0 471223 Geobacillus sp. WCH70 species 1 621 0 581103 species Geobacillus sp. Y4.1MC1 0 512 1 Geobacillus sp. Y412MC61 species 544556 0 1 627 species Geobacillus thermodenitrificans 33940 1505648 species group 2278 4 0 0 1 445 species Geobacillus thermocatenulatus 33938 0 1 946 species Geobacillus thermoleovorans 33941 0 1 281 species Geobacillus kaustophilus 1462 species Geobacillus lituanicus 169283 0 1 606 0 1 574 genus 175304 1472767 Lentibacillus amyloliquefaciens species 574 1 0 2675230 genus 1571 2 0 species Bacillus kochii 859143 0 1 645 species Bacillus oceanisediminis 665099 0 1 926 1055323 genus 648 1 0 33936 species Aeribacillus pallidus 1 648 0 0 1 603 genus 351195 species Salimicrobium jeotgali 1230341 0 1 603 0 2 2 874 genus Terribacillus 1 459532 species Terribacillus aidingensis 586416 0 1 872 0 1 2 1210 genus 1 Oceanobacillus 182709 Oceanobacillus iheyensis species 182710 0 1209 1 Parageobacillus 1 genus 1906945 0 748 2 12 1 736 0 1426 species Parageobacillus thermoglucosidasius 0 2 2428 genus 2675229 1478 Bacillus simplex species 1529 1 0 0 899 1 Bacillus muralis species 264697 2675234 genus 3476 5 0 79880 Bacillus clausii species 875 1 0 689 1 0 199441 Bacillus krulwichiae species 0 1 920 species Bacillus pseudofirmus 79885 419 1 0 86665 Bacillus halodurans species 300825 species Bacillus lehensis 1 573 0 0 3424 7 5 Virgibacillus 1 genus 84406 2017483 Virgibacillus phasianinus species 564 1 0 Virgibacillus necropolis species 163877 0 607 1 529 1 0 1473 Virgibacillus pantothenticus species 2 1021 0 2620237 no rank species Virgibacillus sp. 6R 1911587 0 1 623 398 1 0 403957 Virgibacillus sp. SK37 species Virgibacillus halodenitrificans species 1482 0 698 1 0 53762 58 1838 1 Bacillus genus 1386 Bacillus endophyticus species 135735 0 832 1 1792192 species group 707 1 0 Bacillus altitudinis species 293387 0 707 1 1 641 0 1471 species Bacillus methanolicus species Bacillus weihaiensis 1547283 0 1 684 1664069 species Bacillus glycinifermentans 1 1005 0 Bacillus xiamenensis species 1178537 0 519 1 1153 1 0 561879 Bacillus safensis species 412384 species Bacillus aryabhattai 1 642 0 0 2144 1 Bacillus coagulans species 1398 Bacillus pumilus species 1408 0 2894 1 79883 species Bacillus horikoshii 1 644 0 1 611 0 1413 species Bacillus cellulosilyticus 1479 Bacillus smithii species 463 1 0 species Bacillus cohnii 33932 0 1 620 86664 species Bacillus flexus 1 611 0 Bacillus megaterium species 1404 0 1701 1 632773 Bacillus beveridgei species 615 1 0 no rank 185979 0 7709 19 species Bacillus sp. H15-1 1856406 0 1 615 0 1 463 species Bacillus sp. X1(2014) 1565991 1837130 species Bacillus sp. FJAT-14266 1 690 0 1 287 0 1941347 species Bacillus sp. 275 1 615 0 2026248 species Bacillus sp. 1s-1 2009331 species Bacillus sp. MD-5 1 307 0 species Bacillus sp. 1NLA3E 666686 0 1 691 1 467 0 98228 species Bacillus sp. OxB-1 0 344 1 Bacillus sp. JS species 1127744 639 1 0 756828 Bacillus sp. WP8 species 1774743 species Bacillus sp. SDLI1 1 537 0 1 138 0 1570330 species Bacillus sp. BH072 1628753 species Bacillus sp. LM 4-2 1 157 0 1 294 0 1446792 species Bacillus sp. Pc3 0 1 121 species Bacillus sp. Lzh-5 2049935 0 182 1 Bacillus sp. YP1 species 1574141 0 1 184 species Bacillus sp. (in: Bacteria) 1409 1 627 0 1827146 species Bacillus sp. IHB B 7164 0 1 351 species Bacillus sp. SJ-10 563169 species Bacillus gibsonii 79881 0 1 193 10327 9 0 653685 species group 119858 species Bacillus sonorensis 1 925 0 0 1 768 species Bacillus atrophaeus 1452 species Bacillus subtilis 1423 0 1 3757 817 1 0 1648923 Bacillus paralicheniformis species species Bacillus licheniformis 1402 0 1 964 0 3 2995 species subgroup 1938374 Bacillus amyloliquefaciens species 1390 0 1359 1 492670 species Bacillus velezensis 1 1110 0 0 1 526 species Bacillus siamensis 659243 72361 Bacillus vallismortis species 101 1 0 324767 species Bacillus infantis 1 1098 0 16111 10 0 86661 species group 1 5106 0 1428 species Bacillus thuringiensis 1392 Bacillus anthracis species 323 1 0 species Bacillus cereus 1396 0 1 5221 580165 Bacillus cytotoxicus species 694 1 0 no rank 2750818 0 3 1725 435 1 0 2053832 Bacillus sp. HBCD-sjtu species 1 545 0 1892404 species Bacillus sp. ABP14 1839798 Bacillus sp. FDAARGOS_235 species 745 1 0 1 603 0 658666 species Bacillus bombysepticus 1 1903 0 1405 species Bacillus mycoides 0 1 536 species Bacillus toyonensis 155322 genus 29331 0 1 460 0 1 460 species Amphibacillus xylanus 1449 400634 1 Lysinibacillus genus 4037 5 73 0 species Lysinibacillus sphaericus 1421 0 1 2027 2636778 no rank 552 1 0 Lysinibacillus sp. YS11 species 2072025 0 552 1 species Lysinibacillus fusiformis 28031 0 1 694 1145276 species Lysinibacillus varians 1 691 0 genus 1 Anoxybacillus 150247 0 11 6 2799 no rank 2639704 0 991 2 0 509 1 Anoxybacillus sp. B7M1 species 1490057 1490052 species Anoxybacillus sp. B2M1 1 482 0 Anoxybacillus flavithermus species 33934 0 801 1 species Anoxybacillus gonensis 198467 0 1 427 species Anoxybacillus amylolyticus 294699 0 1 569 8 8 4839 0 186820 family Listeriaceae 1 0 4340 40 6 1 Listeria genus 1637 species Listeria ivanovii 1638 0 1 946 1639 species Listeria monocytogenes 1 1773 0 487 1 0 1640 Listeria seeligeri species species Listeria welshimeri 1643 0 1 568 526 1 0 1642 Listeria innocua species 491 1 0 2755 genus 1 491 0 2756 species Brochothrix thermosphacta 4521 9 19 0 186823 1 Alicyclobacillaceae family 23 2 1198 0 29330 genus Alicyclobacillus 1 405212 Alicyclobacillus acidocaldarius species 1175 1 0 genus Tumebacillus 1 432330 0 3 10 2400 0 941 1 Tumebacillus algifaecis species 1214604 0 1449 1 Tumebacillus avium species 1903704 1129704 1 Kyrpidia genus 904 3 9 0 species Kyrpidia tusciae 33943 0 1 485 2055160 species Kyrpidia sp. EA-1 1 410 0 1 Planococcaceae family 186818 0 14832 47 26 1 Jeotgalibacillus genus 157226 0 900 3 2 897 1 0 1508404 Jeotgalibacillus malaysiensis species 1372 genus Planococcus 1 125 12 6390 0 1302659 species Planococcus sp. L10.15 1 294 0 2662419 no rank 2 937 0 580 1 0 2058136 Planococcus sp. MB-3u-03 species 1526927 species Planococcus sp. PAMC 21323 1 357 0 1374 species Planococcus kocurii 1 524 0 Planococcus maritimus species 192421 0 1395 1 0 1 481 species Planococcus antarcticus 161360 0 1 758 species Planococcus rifietoensis 200991 414778 Planococcus donghaensis species 521 1 0 0 449 1 Planococcus plakortidis species 1038856 396 1 0 1598147 Planococcus faecalis species Planococcus halocryophilus species 1215089 0 510 1 8 3 2262 0 648800 genus Solibacillus 1 no rank 2637870 0 586 1 2048654 species Solibacillus sp. R5-41 1 586 0 Solibacillus silvestris species 76853 0 1668 1 0 700 1 genus 1649 700 1 0 2644826 no rank Kurthia sp. 11kri321 species 1750719 0 700 1 3965 5 28 0 1569 Sporosarcina 1 genus 1 903 0 1476 species Sporosarcina psychrophila 1571 Sporosarcina ureae species 1478 1 0 2 1556 0 2647733 no rank 1930546 Sporosarcina sp. P37 species 791 1 0 0 1 765 species Sporosarcina sp. P33 1930764 0 568 1 2 Rummeliibacillus 1 genus 648802 Rummeliibacillus stabekisii species 241244 0 567 1 Sporolactobacillaceae 1 family 186821 0 900 2 2 1 898 0 663587 no rank 85683 species [Bacillus] selenitireducens 1 898 0 0 60686 147 46 Paenibacillaceae 1 family 186822 78 4 4003 0 55080 genus 1 Brevibacillus 0 1 949 species Brevibacillus formosus 54913 1393 species Brevibacillus brevis 1 1366 0 0 1 1610 species Brevibacillus laterosporus 1465 0 52696 36 497 1 Paenibacillus genus 44249 1763538 species Paenibacillus crassostreae 1 520 0 no rank 185978 0 18286 13 481743 species Paenibacillus sp. Y412MC10 1 1301 0 species Paenibacillus sp. FSL R5-0345 1536770 0 1 938 2069255 species Paenibacillus sp. lzh-N1 1 803 0 0 1 1073 species Paenibacillus sp. 32O-W 1695218 species Paenibacillus sp. FSL H7-0737 1536775 0 1 1179 324057 Paenibacillus sp. JDR-2 species 1434 1 0 0 1 2287 species Paenibacillus sp. FSL R7-0273 1536772 0 1836 1 Paenibacillus sp. FSL R7-0331 species 1536773 1870819 species Paenibacillus sp. BIHB4019 1 1452 0 0 1708 1 Paenibacillus sp. FSL P4-0081 species 1536769 species Paenibacillus sp. FSL H7-0357 1536774 0 1 1785 1807 1 0 1536771 Paenibacillus sp. FSL R5-0912 species species Paenibacillus sp. IHBB 10380 1566358 0 1 683 162209 Paenibacillus naphthalenovorans species 981 1 0 species Paenibacillus borealis 160799 0 1 2120 1 3283 0 1406 species Paenibacillus polymyxa Paenibacillus swuensis species 1178515 0 790 1 0 1 1072 species Paenibacillus kribbensis 172713 1464 species Paenibacillus larvae 1 1021 0 species group 2044880 0 1 2256 1 2256 0 483937 species Paenibacillus riograndensis 528191 Paenibacillus xylanexedens species 1238 1 0 0 1 1259 species Paenibacillus sabinae 365617 0 1 1008 species Paenibacillus terrae 159743 0 1578 1 Paenibacillus ihbetae species 1870820 0 1718 1 Paenibacillus graminis species 189425 species Paenibacillus odorifer 189426 0 1 1246 0 1586 1 Paenibacillus bovis species 1616788 0 2168 1 Paenibacillus stellifer species 169760 0 1 1312 species Paenibacillus yonginensis 1462996 1284 1 0 1126833 Paenibacillus beijingensis species 0 1 969 species Paenibacillus peoriae 59893 Paenibacillus mucilaginosus species 61624 0 2427 1 Paenibacillus donghaensis species 414771 0 1975 1 2102 1 0 44251 Paenibacillus durus species 0 3 1981 no rank 85151 1981 3 3 0 55079 Aneurinibacillus 1 genus 2642329 no rank 949 1 0 1450761 species Aneurinibacillus sp. XH2 1 949 0 species Aneurinibacillus soli 1500254 0 1 1029 0 1859 4 2 1 Thermobacillus genus 76632 0 1 1855 species Thermobacillus composti 377615 order Lactobacillales 1 186826 0 1451 162 166821 2764 8 4 0 186827 1 Aerococcaceae family 7 51 2760 0 1375 genus Aerococcus 1 1 426 0 1377 species Aerococcus viridans 1 421 0 119206 species Aerococcus sanguinicola 0 642 1 Aerococcus urinae species 1376 species Aerococcus urinaehominis 128944 0 1 296 51665 species Aerococcus urinaeequi 1 500 0 0 424 1 Aerococcus christensenii species 87541 1 445 0 263855 no rank 445 1 0 1993866 Lactobacillales bacterium species 33958 family Lactobacillaceae 1 100 58 32312 0 0 411 1 genus 2767892 0 1 411 species Lactobacillus paracollinoides 240427 2767885 genus 853 2 0 0 1 327 species Lactobacillus curvatus 28038 1 526 0 1599 species Lactobacillus sakei genus 2767886 0 3 1165 0 1 575 species Lactobacillus brevis 1580 species Lactobacillus koreensis 637971 0 1 248 342 1 0 267363 Lactobacillus zymae species 1 1041 0 2767876 genus Lactobacillus amylophilus species 1603 0 1041 1 2767877 genus 1 232 0 species Lactobacillus kunkeei 148814 0 1 232 0 1461 3 genus 2767842 Lactobacillus paraplantarum species 60520 0 135 1 419 1 0 1589 Lactobacillus pentosus species 1590 species Lactobacillus plantarum 1 907 0 2759736 genus 3 2460 0 0 695 1 Lactobacillus rhamnosus species 47715 Lactobacillus paracasei species 1597 0 712 1 1582 Lactobacillus casei species 1053 1 0 2767887 genus 6148 4 0 0 405 1 Lactobacillus acidipiscis species 89059 0 1 677 species Lactobacillus agilis 1601 0 1044 1 Lactobacillus salivarius species 1624 4022 1 0 1623 Lactobacillus ruminis species genus 2767893 0 1407 3 1 538 0 1138822 species Lactobacillus curieae 1581 Lactobacillus buchneri species 497 1 0 species Lactobacillus parabuchneri 152331 0 1 372 2767890 genus 1 191 0 1193095 Lactobacillus hokkaidonensis species 191 1 0 2509 6 0 2767879 genus 1 474 0 1007676 species Lactobacillus ginsenosidimutans 1 405 0 1612 species Lactobacillus farciminis 1 326 0 1074467 species Lactobacillus heilongjiangensis 392416 species Lactobacillus crustorum 1 327 0 Lactobacillus alimentarius species 1602 0 451 1 1 526 0 1847728 species Lactobacillus allii genus 2742598 0 2030 3 species Lactobacillus reuteri 1598 0 1 842 1 563 0 1613 species Lactobacillus fermentum 1 625 0 97478 species Lactobacillus mucosae 6 25 2015 0 1253 genus 1 Pediococcus species Pediococcus inopinatus 114090 0 1 280 187452 species Pediococcus claussenii 1 396 0 1255 species Pediococcus pentosaceus 1 610 0 species group 1670797 0 1 310 species Pediococcus acidilactici 1254 0 1 310 51663 species Pediococcus damnosus 1 394 0 2767881 genus 441 2 0 species Lactobacillus sanfranciscensis 1625 0 1 181 53444 species Lactobacillus lindneri 1 260 0 2 680 0 2767889 genus Lactobacillus coryniformis species 1610 0 382 1 0 298 1 Lactobacillus backii species 375175 1578 Lactobacillus 1 genus 9168 395 16 0 Lactobacillus acidophilus species 1579 0 602 1 species Lactobacillus acetotolerans 1600 0 1 258 species Lactobacillus amylolyticus 83683 0 1 325 1110 4 0 2620435 no rank 0 1 265 species Lactobacillus sp. CBA3605 2099788 245 1 0 2099789 Lactobacillus sp. CBA3606 species 346 1 0 1545702 Lactobacillus sp. wkB8 species 254 1 0 2108362 Lactobacillus sp. D1501 species 351 1 0 109790 Lactobacillus jensenii species 0 691 1 Lactobacillus helveticus species 1587 species Lactobacillus delbrueckii 1584 0 1 1622 0 1 714 species Lactobacillus gasseri 1596 1 365 0 267818 species Lactobacillus kefiranofaciens 0 827 1 Lactobacillus johnsonii species 33959 0 1394 1 Lactobacillus amylovorus species 1604 1 514 0 52242 species Lactobacillus gallinarum Enterococcaceae 1 family 81852 0 20480 36 19 0 791 12 3 Vagococcus 1 genus 2737 633807 species Vagococcus penaei 1 267 0 Vagococcus teuberi species 519472 0 512 1 33969 genus 1 Melissococcus 1 2 575 0 species Melissococcus plutonius 33970 0 1 574 genus 1 Enterococcus 1350 0 478 12 18289 53346 species Enterococcus mundtii 1 695 0 0 1 2977 species Enterococcus faecalis 1351 0 453 1 Enterococcus thailandicus species 417368 no rank 2608891 0 1724 3 species Enterococcus sp. FDAARGOS_163 2060306 0 1 534 0 1 620 species Enterococcus sp. FDAARGOS_375 2060307 2057791 Enterococcus sp. CR-Ec1 species 570 1 0 0 986 1 Enterococcus durans species 53345 0 859 1 Enterococcus hirae species 1354 2005703 Enterococcus wangshanyuanii species 811 1 0 1 441 0 37734 species Enterococcus casseliflavus 8865 1 0 1352 Enterococcus faecium species 0 1 789 genus 51668 species Tetragenococcus halophilus 51669 0 1 789 101915 49 1369 0 1300 1 Streptococcaceae family 93891 43 1190 0 1301 Streptococcus 1 genus 1 1796 0 1318 species Streptococcus parasanguinis 16589 3 0 671232 species group 4297 1 0 76860 Streptococcus constellatus species 11088 1 0 1328 Streptococcus anginosus species Streptococcus intermedius species 1338 0 1204 1 Streptococcus pneumoniae species 1313 0 1483 1 0 1 12450 species Streptococcus salivarius 1304 species group 119603 0 2 1922 1336 Streptococcus equi species 1368 1 0 0 554 1 Streptococcus dysgalactiae species 1334 species Streptococcus iniae 1346 0 1 810 1302 species Streptococcus gordonii 1 1885 0 0 489 1 Streptococcus pseudopneumoniae species 257758 28037 Streptococcus mitis species 1910 1 0 1 2005 0 150055 species Streptococcus lutetiensis 0 1 1047 species Streptococcus mutans 1309 Streptococcus macedonicus species 59310 0 671 1 species Streptococcus pluranimalium 82348 0 1 430 0 523 1 Streptococcus marmotae species 1825069 1305 Streptococcus sanguinis species 1015 1 0 1608 1 0 1308 Streptococcus thermophilus species 1349 species Streptococcus uberis 1 420 0 1303 Streptococcus oralis species 2049 1 0 1 6165 0 1311 species Streptococcus agalactiae 12429 1 0 1307 Streptococcus suis species 0 7912 7 no rank 2608887 species Streptococcus sp. 'group B' 1319 0 1 259 1156433 species Streptococcus sp. I-P16 1 1480 0 Streptococcus sp. A12 species 1759399 0 1091 1 624 1 0 712633 Streptococcus sp. oral taxon 431 species 1 2481 0 1839799 species Streptococcus sp. FDAARGOS_192 1408 1 0 1156431 Streptococcus sp. I-G2 species 1902136 Streptococcus sp. NPS 308 species 569 1 0 species Streptococcus cristatus 45634 0 1 695 0 1 374 species Streptococcus merionis 400065 0 1 1369 species Streptococcus pyogenes 1314 471 1 0 1888195 Streptococcus himalayensis species species Streptococcus infantarius 102684 0 1 2333 species Streptococcus parauberis 1348 0 1 757 species Streptococcus acidominimus 1326 0 1 1037 197614 Streptococcus pasteurianus species 5318 1 0 species Streptococcus pantholopis 1811193 0 1 374 0 1592 1 Streptococcus equinus species 1335 2359 1 0 315405 Streptococcus gallolyticus species 1814128 species Streptococcus halotolerans 1 414 0 1357 1 Lactococcus genus 6655 5 7 0 0 1 2961 species Lactococcus lactis 1358 species Lactococcus garvieae 1363 0 1 653 1811 1 0 1366 Lactococcus raffinolactis species 1364 Lactococcus piscium species 1223 1 0 0 3511 9 6 1 Carnobacteriaceae family 186828 191769 genus 499 1 0 2632303 no rank 499 1 0 species Marinilactibacillus sp. 15R 1911586 0 1 499 2 798 0 1470540 genus 0 1 526 no rank 2621505 species Jeotgalibaca sp. PTS2502 1903686 0 1 526 0 272 1 Jeotgalibaca dankookensis species 708126 Carnobacterium 1 genus 2747 0 2208 4 5 1008 2 0 257487 no rank 0 489 1 Carnobacterium sp. 17-4 species 208596 0 519 1 Carnobacterium sp. CP1 species 1564681 0 1 504 species Carnobacterium maltaromaticum 2751 0 1 692 species Carnobacterium inhibens 147709 0 3943 1 17 1 Leuconostocaceae family 81850 46255 1 Weissella genus 1168 6 13 0 1249 species Weissella paramesenteroides 1 278 0 Weissella ceti species 759620 0 217 1 species Weissella cibaria 137591 0 1 258 229 1 0 1631871 Weissella jogaejeotgali species 1 173 0 165096 species Weissella koreensis 16 9 2427 0 1243 genus 1 Leuconostoc 353 1 0 1244 Leuconostoc gelidum species species Leuconostoc lactis 1246 0 1 265 Leuconostoc carnosum species 1252 0 165 1 0 287 1 Leuconostoc kimchii species 136609 0 1 209 no rank 2685106 1 209 0 979982 species Leuconostoc sp. C2 611 1 0 1245 Leuconostoc mesenteroides species Leuconostoc garlicum species 255248 0 246 1 33964 Leuconostoc citreum species 275 1 0 46254 genus 1 347 0 1247 Oenococcus oeni species 347 1 0 11014 11 5 0 526524 1 Erysipelotrichia class 10 14 11009 0 526525 order 1 Erysipelotrichales family 1 Erysipelotrichaceae 128827 0 9 22 10995 1 Turicibacter genus 191303 0 1395 2 4 no rank 2638206 0 1 1391 species Turicibacter sp. H121 1712675 0 1 1391 5689 1 0 544447 no rank 1 5689 0 1834207 species Erysipelotrichaceae bacterium I46 1729679 genus 1 Faecalibaculum 2 2 2766 0 1702221 Faecalibaculum rodentium species 2764 1 0 Erysipelothrix 1 genus 1647 0 1123 3 16 species Erysipelothrix larvae 1514105 0 1 616 1648 Erysipelothrix rhusiopathiae species 491 1 0 18 12852 0 1737404 class 87 16 12219 0 1737405 order Tissierellales 1 1570339 1 Peptoniphilaceae family 11108 2576 12 0 150022 genus 1 Finegoldia 1 2 842 0 species Finegoldia magna 1260 0 1 841 1 Murdochiella genus 1161127 0 4869 8 2 0 1 4861 species Murdochiella vaginalis 1852373 717 1 2 0 162289 Peptoniphilus 1 genus 716 1 0 2637196 no rank Peptoniphilus sp. ING2-D1G species 1912856 0 716 1 543311 genus Parvimonas 1 7 2 964 0 33033 species Parvimonas micra 1 957 0 1140 2 3 0 165779 Anaerococcus 1 genus 1 515 0 1870984 species Anaerococcus mediterraneensis species Anaerococcus prevotii 33034 0 1 623 2042895 family 1 Gottschalkiaceae 1 3 1024 0 1023 2 3 0 1505664 Gottschalkia 1 genus 1020 1 0 1556 Gottschalkia acidurici species 1737407 no rank 2 633 0 2 2 633 0 1582879 genus 1 Ezakiella 0 631 1 Ezakiella massiliensis species 1852374 0 2 5 876 class 1 Limnochordia 1676648 874 14 4 0 1676649 Limnochordales 1 order Limnochordaceae 1 family 1676650 0 860 5 3 1 Limnochorda genus 1676651 0 855 2 3 species Limnochorda pilosa 1555112 0 1 852 1 Clostridia class 186801 0 3490760 183 214 53433 order Halanaerobiales 1 11 1 2849 0 0 1110 3 4 1 Halobacteroidaceae family 53434 498 1 0 42417 genus 0 498 1 Halobacteroides halobius species 42422 609 2 2 0 28186 1 Acetohalobium genus 28187 species Acetohalobium arabaticum 1 607 0 0 1738 12 6 1 Halanaerobiaceae family 972 1 2 500 0 32636 genus Halothermothrix 1 0 1 499 species Halothermothrix orenii 31909 genus Halanaerobium 1 2330 0 3 5 1226 2331 Halanaerobium praevalens species 497 1 0 656519 Halanaerobium hydrogeniformans species 724 1 0 20 36 16887 0 68295 order Thermoanaerobacterales 1 186814 family Thermoanaerobacteraceae 1 19 12 8894 0 42857 no rank 1436 4 0 genus 1 Moorella 44260 0 4 2 931 1525 species Moorella thermoacetica 1 927 0 0 505 2 1 1 Ammonifex genus 42837 species Ammonifex degensii 42838 0 1 504 genus Thermoanaerobacter 1 1754 0 136 9 5653 678 1 0 29323 Thermoanaerobacter brockii species 0 1597 2 no rank 2636821 797 1 0 399726 Thermoanaerobacter sp. X514 species 1 800 0 573062 species Thermoanaerobacter sp. X513 0 723 1 Thermoanaerobacter wiegelii species 46354 720 1 0 2325 Thermoanaerobacter kivui species Thermoanaerobacter pseudethanolicus species 496866 0 678 1 Thermoanaerobacter mathranii species 583357 0 508 1 0 1 613 species Thermoanaerobacter italicus 108150 0 645 2 1 1 Carboxydothermus genus 129957 129958 species Carboxydothermus hydrogenoformans 1 644 0 genus 249529 0 603 1 0 603 1 Caldanaerobacter subterraneus species 911092 140458 1 Thermacetogenium genus 545 1 2 0 Thermacetogenium phaeum species 85874 0 544 1 543371 family 1 Thermoanaerobacterales Family III. Incertae Sedis 28 13 7151 0 2001 3 3 0 28895 1 Thermoanaerobacterium genus 29329 Thermoanaerobacterium xylanolyticum species 735 1 0 1 1263 0 1517 species Thermoanaerobacterium thermosaccharolyticum 1 Caldicellulosiruptor genus 44000 0 5122 91 9 584 1 0 55205 Caldicellulosiruptor owensensis species 610 1 0 413888 Caldicellulosiruptor hydrothermalis species 31899 Caldicellulosiruptor bescii species 600 1 0 Caldicellulosiruptor kronotskyensis species 413889 0 577 1 0 686 1 Caldicellulosiruptor kristjanssonii species 52765 769 1 0 52766 Caldicellulosiruptor lactoaceticus species 544 1 0 717609 Caldicellulosiruptor obsidiansis species 1 661 0 44001 species Caldicellulosiruptor saccharolyticus Thermoanaerobacterales Family IV. Incertae Sedis 1 family 543372 0 627 3 2 genus 252965 0 624 1 0 624 1 Mahella australiensis species 252966 0 195 1 family 227387 195 1 0 227388 genus Thermodesulfobium narugense species 184064 0 195 1 2 459 0 485256 order family 485255 0 459 2 0 459 18 2 1 Natranaerobius genus 375928 441 1 0 375929 Natranaerobius thermophilus species 186802 1 Clostridiales order 3468978 161 6863 0 27 441 1892591 0 186803 family Lachnospiraceae 1 55 2 203845 0 841 genus 1 Roseburia 1 203790 0 301301 species Roseburia hominis 76419 219 4 0 1506553 1 Lachnoclostridium genus 0 33454 1 no rank 2608895 33454 1 0 1834196 Lachnoclostridium sp. YL32 species 0 7226 1 Lachnoclostridium phytofermentans species 66219 35520 1 0 1871021 Lachnoclostridium phocaeense species 0 2747 2 11 1 Cellulosilyticum genus 698776 29360 species Cellulosilyticum lentocellum 1 2736 0 17 3 17930 0 830 genus Butyrivibrio 1 0 1 9071 species Butyrivibrio proteoclasticus 43305 8842 1 0 185008 Butyrivibrio hungatei species 207244 genus Anaerostipes 1 100 2 75680 0 75580 1 0 649756 Anaerostipes hadrus species 69203 76 3 0 572511 Blautia 1 genus species Blautia hansenii 1322 0 1 42905 no rank 2648079 0 26222 1 0 26222 1 Blautia sp. YL58 species 1796616 37010 1 0 2719231 genus 0 37010 1 [Clostridium] saccharolyticum species 84030 0 1 63491 genus 2719313 63491 1 0 208479 [Clostridium] bolteae species 4701 2 3 0 1663717 1 Herbinix genus Herbinix luporum species 1679721 0 4698 1 genus 2569097 0 101048 1 0 101048 1 [Eubacterium] hallii species 39488 1 84553 0 28050 genus [Eubacterium] eligens species 39485 0 84553 1 186928 no rank 2 1150547 0 0 1 1138758 species [Eubacterium] rectale 39491 712991 Lachnospiraceae bacterium oral taxon 500 species 11789 1 0 2039240 genus 1 Anaerotignum 3 2 4976 0 4973 1 0 28446 Anaerotignum propionicum species 0 26728 12 family 2304686 236752 genus 1 Fastidiosipila 2 2 703 0 236753 Fastidiosipila sanguinis species 701 1 0 1 12856 0 2305130 no rank 12856 1 0 1834198 Ruminiclostridium sp. KB18 species 2304691 genus 1662 1 0 0 1 1662 species [Clostridium] stercorarium 1510 0 2 2 2224 genus 1 Mageeibacillus 1637257 1 2222 0 884684 species Mageeibacillus indolicus genus 2304692 0 5120 3 1 1681 0 288965 species [Clostridium] clariflavum 0 1 2031 species Ruminiclostridium thermocellum 1515 0 1 1408 species Herbivorax saccincola 1677857 0 2225 296 2 Ruminiclostridium 1 genus 1508657 [Clostridium] cellulolyticum species 1521 0 1929 1 0 1 1938 genus 2304693 0 1938 1 [Clostridium] thermosuccinogenes species 84032 538999 no rank 10 89055 0 0 36340 1 genus 2717089 2086584 Mordavella sp. Marseille-P3756 species 36340 1 0 539000 family Clostridiales Family XVII. Incertae Sedis 1 3 2 1166 0 73918 Thermaerobacter 1 genus 1164 2 2 0 0 1162 1 Thermaerobacter marianensis species 73919 family 1 Clostridiales Family XIII. Incertae Sedis 543314 0 4 7 5918 1 Mogibacterium genus 86331 0 2727 9 2 114527 Mogibacterium diversum species 2718 1 0 3184 1 0 143393 [Eubacterium] sulci species genus Intestinimonas 1 1392389 0 144 2 45631 1297617 Intestinimonas butyriciproducens species 45487 1 0 family 1 Christensenellaceae 990719 0 3 16 12106 2 117 12090 0 990721 genus 1 Christensenella Christensenella massiliensis species 1805714 0 11973 1 family Oscillospiraceae 1 216572 0 4 3 16566 459786 1 Oscillibacter genus 16562 2 36 0 0 16526 1 Oscillibacter valericigenes species 351091 Eubacteriaceae 1 family 186806 0 12906 5 5 1730 genus 1 Eubacterium 223 2 11638 0 11415 1 0 1736 Eubacterium limosum species 0 2 1 1263 genus Acetobacterium 1 33951 33952 species Acetobacterium woodii 1 1262 0 family 1 Peptostreptococcaceae 186804 0 10 146 37592 0 1 755 no rank 1411023 2081703 species Peptostreptococcaceae bacterium oral taxon 929 1 755 0 1 996 0 186831 genus species Acetoanaerobium sticklandii 1511 0 1 996 1849828 genus Paeniclostridium 1 2 2 1495 0 1 1493 0 1505 species Paeniclostridium sordellii genus 1 Clostridioides 1870884 0 151 2 31926 1 31775 0 1496 species Clostridioides difficile 1481960 genus 1 1206 0 0 1206 1 Peptoclostridium acidaminophilum species 1731 Filifactor 1 genus 44259 0 1068 2 1 143361 species Filifactor alocis 1 1067 0 248 12 1260408 0 541000 family 1 Ruminococcaceae 216851 Faecalibacterium 1 genus 1177074 165 2 0 853 Faecalibacterium prausnitzii species 1176909 1 0 genus 1 Flavonifractor 946234 0 2 61 47457 1 47396 0 292800 species Flavonifractor plautii 20148 89 3 0 1263 Ruminococcus 1 genus 7818 1 0 1264 Ruminococcus albus species 1160721 species Ruminococcus bicirculans 1 12241 0 0 6012 1 no rank 2305133 6012 1 0 1572656 Ruminococcaceae bacterium CPB6 species 1 2405 0 552397 no rank 0 1 2405 species [Clostridium] cellulosi 29343 0 7064 2 4 1 Ethanoligenens genus 253238 7060 1 0 253239 Ethanoligenens harbinense species 0 28 45 23105 family Peptococcaceae 1 186807 4 2 788 0 471826 genus Candidatus Desulforudis 1 784 1 0 471827 Candidatus Desulforudis audaxviator species genus 2282742 0 1126 1 1 1126 0 58138 species Desulfotomaculum acetoxidans Thermincola 1 genus 278993 0 1040 2 8 species Thermincola potens 863643 0 1 1032 3993 34 5 0 1562 Desulfotomaculum 1 genus 1037 1 0 1565 Desulfotomaculum nigrificans species 0 1 1008 species Desulfotomaculum ferrireducens 1833852 1355 1 0 1564 Desulfotomaculum ruminis species 0 1 559 species Desulfotomaculum reducens 59610 genus 2282740 0 1326 1 0 1 1326 species Desulfotomaculum gibsoniae 102134 4 63 2848 0 79206 genus 1 Desulfosporosinus 1084 1 0 1563 Desulfosporosinus orientis species 79209 Desulfosporosinus meridiei species 879 1 0 885581 species Desulfosporosinus acidiphilus 1 822 0 56112 genus Dehalobacter 1 4 38 4093 0 0 1 1332 species Dehalobacter restrictus 55583 2 2723 0 2635733 no rank Dehalobacter sp. CF species 1131462 0 1420 1 0 1 1303 species Dehalobacter sp. DCA 1147129 0 4926 66 5 1 Desulfitobacterium genus 36853 2132 1 0 49338 Desulfitobacterium hafniense species Desulfitobacterium metallireducens species 142877 0 720 1 1 1223 0 36854 species Desulfitobacterium dehalogenans 785 1 0 233055 Desulfitobacterium dichloroeliminans species genus 51514 0 1980 1 species Dehalobacterium formicoaceticum 51515 0 1 1980 0 2 1 940 genus 1 Syntrophobotulus 51196 Syntrophobotulus glycolicus species 51197 0 939 1 2437 3 5 0 31984 1 Heliobacteriaceae family 0 2 16 2432 genus Heliobacterium 1 2697 species Heliobacterium modesticaldum 35701 0 1 2416 family 68298 0 3 911 1 Syntrophothermus genus 129001 0 455 2 2 0 453 1 Syntrophothermus lipocalidus species 86170 862 genus 456 1 0 1 456 0 863 species Syntrophomonas wolfei 0 150 41 86086 family Clostridiaceae 1 31979 0 1966 3 2 Alkaliphilus 1 genus 114627 0 1 978 species Alkaliphilus oremlandii 461876 Alkaliphilus metalliredigens species 208226 0 986 1 390805 genus Geosporobacter 1 2 11 2207 0 0 2196 1 Geosporobacter ferrireducens species 1424294 genus Mordavella 1981033 0 1 55 49082 genus 1 Candidatus Arthromitus 18 4 1732 0 3 1714 0 2638829 no rank 705 1 0 1041504 Candidatus Arthromitus sp. SFB-rat-Yit species 0 477 1 Candidatus Arthromitus sp. SFB-mouse species 49118 species Candidatus Arthromitus sp. SFB-mouse-NL 1508644 0 1 532 1485 Clostridium 1 genus 79976 30 325 0 0 1 2016 species Clostridium scatologenes 1548 0 1 1936 species Clostridium saccharobutylicum 169679 0 2 23105 no rank 2614128 1042156 species Clostridium sp. SY8519 1 21030 0 species Clostridium sp. BNL1100 755731 0 1 2075 36745 species Clostridium saccharoperbutylacetonicum 1 2694 0 1 2361 0 1492 species Clostridium butyricum 1493 species Clostridium cellulovorans 1 2126 0 0 3366 1 Clostridium beijerinckii species 1520 species Clostridium bornimense 1216932 0 1 1698 Clostridium cochlearium species 1494 0 1239 1 29341 species Clostridium argentinense 1 1386 0 1538 species Clostridium ljungdahlii 1 1262 0 0 2290 1 Clostridium kluyveri species 1534 1806 1 0 217159 Clostridium carboxidivorans species Clostridium perfringens species 1502 0 3226 1 0 1 1472 species Clostridium sporogenes 1509 0 1 1118 species Clostridium estertheticum 238834 1 1130 0 1488 species Clostridium acetobutylicum 0 1 2608 species Clostridium pasteurianum 1501 0 1287 1 Clostridium aceticum species 84022 1 1152 0 46867 species Clostridium chauvoei 1497 Clostridium formicaceticum species 1664 1 0 1 1175 0 84023 species Clostridium autoethanogenum species Clostridium taeniosporum 394958 0 1 1523 species Clostridium baratii 1561 0 1 2683 0 1 1537 species Clostridium tyrobutyricum 1519 1 1939 0 1513 species Clostridium tetani 0 1030 1 Clostridium novyi species 1542 8822 1 0 1491 Clostridium botulinum species 0 7 3 1624 family Symbiobacteriaceae 1 543349 genus 1 Symbiobacterium 2733 0 2 9 1617 1 1608 0 2734 species Symbiobacterium thermophilum 0 3 1404 order 2770089 family 2770093 0 2 734 3 2 734 0 291988 genus 1 Thermosediminibacter 0 1 731 species Thermosediminibacter oceani 291990 family 2770092 0 1 670 genus 499228 0 1 670 499229 Tepidanaerobacter acetatoxydans species 670 1 0 33974 no rank 2 1121 0 1930845 genus 1 Ndongobacter 6 2 1121 0 1871025 Ndongobacter massiliensis species 1115 1 0 no rank 84086 0 512 1 endosymbiont 'TC1' of Trimyema compressum species 243899 0 512 1 0 54916 58 29 1 Negativicutes class 909932 Veillonellales 1 order 1843489 0 16944 337 11 31977 family Veillonellaceae 1 10 474 16607 0 Negativicoccus 1 genus 909928 0 1228 2 2 0 1226 1 Negativicoccus massiliensis species 1702287 Veillonella 1 genus 29465 0 6443 13 3 Veillonella rodentium species 248315 0 2209 1 species Veillonella parvula 29466 0 1 4221 39948 1 Dialister genus 2064 19 2 0 Dialister pneumosintes species 39950 0 2045 1 0 22 2 6398 genus Megasphaera 1 906 1 6376 0 907 species Megasphaera elsdenii 0 20699 12 71 Selenomonadales 1 order 909929 1843490 family 3 3227 0 1 Pelosinus genus 365348 0 3227 3 5 2629460 no rank 1 1100 0 0 1100 1 Pelosinus sp. UFO1 species 484770 Pelosinus fermentans species 365349 0 2122 1 1 Selenomonadaceae family 1843491 0 17401 64 8 158846 genus 1 2398 0 0 1 2398 species Megamonas hypermegale 158847 Selenomonas 1 genus 970 0 14939 91 6 2637378 no rank 3 6580 0 712538 Selenomonas sp. oral taxon 478 species 2011 1 0 1884263 species Selenomonas sp. oral taxon 920 1 2173 0 0 1 2396 species Selenomonas sp. oral taxon 136 713030 69823 species Selenomonas sputigena 1 3027 0 species Selenomonas ruminantium 971 0 1 5241 17215 5 22 0 1843488 1 Acidaminococcales order 4 14 17193 0 909930 family 1 Acidaminococcaceae 17179 88 3 0 904 Acidaminococcus 1 genus 1 9262 0 187327 species Acidaminococcus intestini species Acidaminococcus fermentans 905 0 1 7829 200795 1 Chloroflexi phylum 10365 2 45 0 Dehalococcoidia 1 class 301297 0 2943 8 13 0 1158 3 8 Dehalogenimonas 1 genus 670486 1 545 0 1839801 species Dehalogenimonas formicexedens 552810 Dehalogenimonas lykanthroporepellens species 605 1 0 1202465 1 Dehalococcoidales order 1772 4 1 0 1202464 family 1771 3 0 2 3 1771 0 61434 genus Dehalococcoides 1 0 1 409 no rank 237581 0 1 409 species Dehalococcoides sp. UCH007 1522671 species Dehalococcoides mccartyi 61435 0 1 1360 Chloroflexia 1 class 32061 0 2322 10 2 2320 30 9 0 32064 1 Chloroflexales order 4 1173 0 1508594 suborder 1106 family 1173 4 0 1107 genus Chloroflexus 1 4 5 1173 0 0 795 2 398 1 Chloroflexus aurantiacus species 1108 0 397 1 Chloroflexus sp. Y-400-fl strain 480224 152260 species Chloroflexus aggregans 1 373 0 1117 4 0 1508595 suborder 0 10 4 1117 family 1 Roseiflexaceae 1508635 1107 3 2 0 120961 1 Roseiflexus genus Roseiflexus castenholzii species 120962 0 469 1 no rank 2609473 0 1 636 357808 species Roseiflexus sp. RS-1 1 636 0 475962 class Caldilineae 1 5 10 895 0 475963 1 Caldilineales order 885 4 2 0 0 883 2 3 Caldilineaceae 1 family 475964 233191 genus Caldilinea 1 2 2 881 0 0 1 879 species Caldilinea aerophila 133453 9 16 946 0 189775 class 1 Thermomicrobia 0 1 4 259 order 1 Thermomicrobiales 189776 258 3 16 0 189777 1 Thermomicrobiaceae family 0 10 2 242 genus 1 Thermomicrobium 499 500 species Thermomicrobium roseum 1 232 0 85000 subclass 671 4 0 0 671 4 33 1 Sphaerobacterales order 85001 0 638 3 suborder 255728 Sphaerobacteraceae 1 family 85002 0 638 3 4 2056 genus 1 Sphaerobacter 2 11 634 0 2057 species Sphaerobacter thermophilus 1 623 0 7 7 1933 0 292625 class Anaerolineae 1 292629 Anaerolineales 1 order 1926 6 2 0 Anaerolineaceae 1 family 292628 0 1924 5 10 genus 2019482 0 1 343 1986204 Brevefilum fermentans species 343 1 0 1324991 no rank 1 874 0 1 874 0 1889813 species Anaerolineaceae bacterium oral taxon 439 genus 1 Anaerolinea 233189 0 7 2 697 1 690 0 167964 species Anaerolinea thermophila 0 1324 5 5 1 Ardenticatenia class 1382928 1382929 1 Ardenticatenales order 1319 20 4 0 1382930 1 Ardenticatenaceae family 1299 16 3 0 1 Candidatus Promineofilum genus 1988031 0 1283 2 5 species Candidatus Promineofilum breve 1806508 0 1 1278 phylum Tenericutes 1 544448 0 100 2 19138 0 2 1429 no rank 713063 1 710 0 1911684 species Tenericutes bacterium MO-XQ 0 719 1 Tenericutes bacterium MZ-XQ species 1911683 0 1 555 no rank 2799557 0 555 1 genus 1912503 1 555 0 2624196 no rank 0 555 1 Candidatus Izimaplasma sp. HR1 species 1541959 Mollicutes 1 class 31969 0 17152 96 11 2085 Mycoplasmatales 1 order 7399 44 8 0 0 7391 43 8 1 Mycoplasmataceae family 2092 0 101 27 4572 genus Mycoplasma 1 2093 0 1191 3 species group 656088 Mycoplasma capricolum species 2095 0 292 1 Mycoplasma mycoides species 2102 0 573 1 1 326 0 2105 species Mycoplasma leachii 1 110 0 2683645 no rank 1749074 Mycoplasma sp. (ex Biomphalaria glabrata) species 110 1 0 0 52 1 Mycoplasma haemofelis species 29501 59 1 0 2097 Mycoplasma genitalium species Mycoplasma dispar species 86660 0 198 1 248 1 0 51365 Mycoplasma yeatsii species species Mycoplasma bovoculi 45362 0 1 76 0 1 81 species Mycoplasma pneumoniae 2104 190 1 0 50052 Mycoplasma crocodyli species species Mycoplasma ovis 171632 0 1 41 2096 species Mycoplasma gallisepticum 1 143 0 200 1 0 29554 Mycoplasma canadense species 1 46 0 65123 species Mycoplasma wenyonii 294 1 0 2118 Mycoplasma mobile species 0 1 101 species Mycoplasma suis 57372 species Mycoplasma penetrans 28227 0 1 267 2100 Mycoplasma hyorhinis species 120 1 0 Mycoplasma hyopneumoniae species 2099 0 115 1 76 1 0 136241 Mycoplasma haemocanis species 0 151 1 Mycoplasma arthritidis species 2111 152 1 0 2123 Mycoplasma putrefaciens species 1 40 0 984991 species Mycoplasma parvum 0 113 1 Mycoplasma flocculare species 2128 Mycoplasma hominis species 2098 0 407 1 genus Ureaplasma 1 2129 0 3 3 351 195 1 0 134821 Ureaplasma parvum species 2130 Ureaplasma urealyticum species 153 1 0 genus 2767358 0 12 2460 2110 Mycoplasma agalactiae species 256 1 0 171284 Mycoplasma cynos species 271 1 0 Mycoplasma canis species 29555 0 265 1 48003 Mycoplasma pullorum species 126 1 0 0 1 141 species Mycoplasma bovirhinis 29553 Mycoplasma pulmonis species 2107 0 159 1 Mycoplasma arginini species 2094 0 166 1 373 1 0 28903 Mycoplasma bovis species 143 1 0 2113 Mycoplasma californicum species 248 1 0 2115 Mycoplasma fermentans species 2109 Mycoplasma synoviae species 151 1 0 2112 Mycoplasma bovigenitalium species 161 1 0 2 12 2071 0 186329 order 1 Acholeplasmatales Acholeplasmataceae 1 family 2146 0 2069 11 12 5 4 1499 0 2147 genus Acholeplasma 1 481 1 0 2148 Acholeplasma laidlawii species 0 1 253 species Acholeplasma brassicae 61635 1 245 0 35623 species Acholeplasma oculi 0 516 1 Acholeplasma palmae species 38986 5 558 0 33926 genus 85632 species group 1 140 0 species Candidatus Phytoplasma australiense 59748 0 1 140 85630 species group 90 1 0 1 90 0 37692 species Candidatus Phytoplasma mali 0 328 3 species group 85620 Aster yellows witches'-broom phytoplasma species 229545 0 102 1 Maize bushy stunt phytoplasma species 202462 0 119 1 Onion yellows phytoplasma species 100379 0 107 1 7671 9 39 0 186328 1 Entomoplasmatales order family 1 Spiroplasmataceae 2131 0 24 6 5358 Spiroplasma 1 genus 2132 0 5352 23 112 216938 species Spiroplasma helicoides 1 253 0 Spiroplasma diminutum species 216936 0 254 1 2136 Spiroplasma monobiae species 172 1 0 362837 Spiroplasma cantharicola species 142 1 0 0 1 173 species Spiroplasma citri 2133 239 1 0 2144 Spiroplasma mirum species Spiroplasma sabaudiense species 216944 0 182 1 Spiroplasma taiwanense species 2145 0 271 1 0 335 1 Spiroplasma floricola species 216937 0 225 1 Spiroplasma chrysopicola species 216933 165 1 0 2137 Spiroplasma apis species 0 532 2 no rank 2637901 0 266 1 Spiroplasma sp. TU-14 species 1898044 1 266 0 1914410 species Spiroplasma sp. NBRC 100390 216942 species Spiroplasma litorale 1 176 0 Spiroplasma clarkii species 2139 0 264 1 216945 species Spiroplasma syrphidicola 1 162 0 216934 Spiroplasma corruscae species 207 1 0 0 1 277 species Spiroplasma eriocheiris 315358 0 1 397 species Spiroplasma kunkelii 47834 216946 species Spiroplasma turonicum 1 257 0 1114980 species Spiroplasma atrichopogonis 1 240 0 Spiroplasma culicicola species 216935 0 317 1 Entomoplasmataceae 1 family 33925 0 2304 5 14 46238 genus Entomoplasma 1 5 34 764 0 0 1 70 species Entomoplasma freundtii 74700 256 1 0 81459 Entomoplasma melaleucae species 112 1 0 214888 Entomoplasma luminosum species 0 292 1 Entomoplasma somnilux species 215578 46239 Mesoplasma 1 genus 1535 89 8 0 1 290 0 138853 species Mesoplasma lactucae species Mesoplasma tabanidae 219745 0 1 150 2151 species Mesoplasma florum 1 424 0 144 1 0 2149 Mesoplasma entomophilum species 225999 Mesoplasma syrphidae species 135 1 0 Mesoplasma chauliocola species 216427 0 119 1 0 1 184 species Mesoplasma coleopterae 324078 648 39 750667 0 201174 phylum 1 Actinobacteria 30 355 114150 0 84998 class Coriobacteriia 1 84999 order Coriobacteriales 1 12 365 83584 0 74944 5 288 0 84107 Coriobacteriaceae 1 family 0 1819 1 no rank 84113 1531429 species Coriobacteriaceae bacterium 68-1-3 1 1819 0 0 1079 1 genus 33870 species Coriobacterium glomerans 33871 0 1 1079 2 29 71758 0 102106 genus 1 Collinsella species Collinsella aerofaciens 74426 0 1 71729 1643824 family Atopobiaceae 1 6 120 8275 0 genus Olsenella 1 133925 0 122 4 7336 3336 1 0 1805478 Olsenella sp. Marseille-P2300 species 133926 species Olsenella uli 1 2303 0 no rank 2638792 0 1575 1 0 1 1575 species Olsenella sp. oral taxon 807 712411 0 819 1 genus 2767353 1382 Atopobium parvulum species 819 1 0 Eggerthellales 1 order 1643822 0 30211 490 17 1643826 family 1 Eggerthellaceae 16 4229 29721 0 genus 1 Slackia 84108 0 9 2 2959 2950 1 0 84110 Slackia heliotrinireducens species 1612 1 2 0 79603 Denitrobacterium 1 genus 1611 1 0 79604 Denitrobacterium detoxificans species 1 Gordonibacter genus 644652 0 6669 20 3 Gordonibacter urolithinfaciens species 1335613 0 3577 1 0 1 3072 species Gordonibacter massiliensis 1841863 genus 1981050 0 1 916 1 916 0 1944646 species Phoenicibacter massiliensis 84162 genus 1 Cryptobacterium 1 2 473 0 Cryptobacterium curtum species 84163 0 472 1 447020 Adlercreutzia 1 genus 5117 2 2 0 0 1 5115 species Adlercreutzia equolifaciens 446660 0 3 108 7746 genus Eggerthella 1 84111 5904 1 0 84112 Eggerthella lenta species 2648737 no rank 1 1734 0 1 1734 0 502558 species Eggerthella sp. YY7918 84995 class Rubrobacteria 1 6 24 1192 0 Rubrobacterales 1 order 84996 0 1168 11 5 1157 4 4 0 84997 1 Rubrobacteraceae family 42255 genus Rubrobacter 1 33 3 1153 0 1 430 0 42256 species Rubrobacter radiotolerans Rubrobacter xylanophilus species 49319 0 690 1 1124 5 2 0 1497346 Thermoleophilia 1 class 0 16 4 1122 order 1 Solirubrobacterales 588673 0 14 3 1106 family Conexibacteraceae 1 320583 1092 2 12 0 191494 Conexibacter 1 genus 0 1 1080 species Conexibacter woesei 191495 no rank 1752188 0 4 443 81 1 0 1848755 Actinobacteria bacterium IMCC26077 species 1 97 0 1848255 species Actinobacteria bacterium IMCC25003 1848756 Actinobacteria bacterium IMCC26103 species 143 1 0 1848754 Actinobacteria bacterium IMCC19121 species 122 1 0 1760 class Actinobacteria 1 2629 595 632549 0 1 Catenulisporales order 414714 0 1135 4 6 414877 family 1 Catenulisporaceae 3 12 1129 0 1117 2 7 0 414878 Catenulispora 1 genus species Catenulispora acidiphila 304895 0 1 1110 85004 order 1 Bifidobacteriales 26 108 349044 0 31953 Bifidobacteriaceae 1 family 348936 25 2302 0 196082 genus 1 Parascardovia 3 2 686 0 0 683 1 Parascardovia denticolens species 78258 19 333 344989 0 1678 genus Bifidobacterium 1 638619 species Bifidobacterium actinocoloniiforme 1 493 0 Bifidobacterium choerinum species 35760 0 918 1 0 1148 1 Bifidobacterium animalis species 28025 3416 1 0 1683 Bifidobacterium angulatum species 9806 1 0 28026 Bifidobacterium pseudocatenulatum species 0 1 664 species Bifidobacterium asteroides 1684 216816 Bifidobacterium longum species 23436 1 0 1 1224 0 1689 species Bifidobacterium dentium 1686 species Bifidobacterium catenulatum 1 2 5998 15348 0 0 9350 1 Bifidobacterium kashiwanohense subspecies 630129 Bifidobacterium thermophilum species 33905 0 1448 1 1687 Bifidobacterium coryneforme species 434 1 0 8363 1 0 1685 Bifidobacterium breve species 0 1 1735 species Bifidobacterium scardovii 158787 1330 1 0 1694 Bifidobacterium pseudolongum species 1 12314 0 1681 species Bifidobacterium bifidum Bifidobacterium indicum species 1691 0 451 1 262128 1 0 1680 Bifidobacterium adolescentis species 0 389 1 genus 196081 78259 Scardovia inopinata species 389 1 0 2701 Gardnerella 1 genus 570 2 1 0 Gardnerella vaginalis species 2702 0 569 1 582 2 0 1643818 no rank 1 Thermobispora genus 147067 0 582 4 2 species Thermobispora bispora 2006 0 1 578 1 Corynebacteriales order 85007 0 77543 162 677 0 884 7 4 1 Dietziaceae family 85029 37 3 877 0 37914 genus Dietzia 1 499555 Dietzia timorensis species 328 1 0 512 1 0 2617939 no rank 0 1 512 species Dietzia sp. oral taxon 368 712270 0 25943 133 52 Corynebacteriaceae 1 family 1653 1716 1 Corynebacterium genus 25810 51 582 0 601 1 0 1230998 Corynebacterium frankenforstense species 1 442 0 1705 species Corynebacterium stationis 0 882 1 Corynebacterium glutamicum species 1718 1 551 0 1223514 species Corynebacterium humireducens 0 1260 1 Corynebacterium striatum species 43770 1721 species Corynebacterium callunae 1 437 0 674 1 0 152794 Corynebacterium efficiens species 161896 Corynebacterium camporealensis species 550 1 0 0 1 422 species Corynebacterium cystitidis 35757 1 420 0 1408191 species Corynebacterium deserti Corynebacterium halotolerans species 225326 0 775 1 376 1 0 161895 Corynebacterium phocae species 1 713 0 191493 species Corynebacterium sphenisci 1 408 0 1697 species Corynebacterium ammoniagenes Corynebacterium singulare species 161899 0 392 1 0 1 469 species Corynebacterium glaucum 187491 1 367 0 43771 species Corynebacterium urealyticum 0 715 1 Corynebacterium simulans species 146827 420 1 0 203263 Corynebacterium aquilae species 349751 Corynebacterium marinum species 543 1 0 species Corynebacterium glyciniphilum 1404244 0 1 387 species Corynebacterium diphtheriae 1717 0 1 768 species Corynebacterium doosanense 1121358 0 1 515 0 1 306 species Corynebacterium atypicum 191610 830 1 0 38289 Corynebacterium jeikeium species species Corynebacterium testudinoris 136857 0 1 468 0 306 1 Corynebacterium kroppenstedtii species 161879 1050174 species Corynebacterium epidermidicanis 1 264 0 92706 species [Brevibacterium] flavum 1 463 0 723 2 0 2624378 no rank Corynebacterium sp. NML98-0116 species 702967 0 434 1 0 289 1 Corynebacterium sp. ATCC 6931 species 1487956 0 671 1 Corynebacterium variabile species 1727 0 1 429 species Corynebacterium maris 575200 species Corynebacterium resistens 258224 0 1 238 Corynebacterium ureicelerivorans species 401472 0 407 1 325 1 0 1231000 Corynebacterium lactis species 1 308 0 28028 species Corynebacterium flavescens 0 792 1 Corynebacterium vitaeruminis species 38305 0 1 389 species Corynebacterium crudilactis 1652495 0 588 1 Corynebacterium argentoratense species 42817 Corynebacterium pseudotuberculosis species 1719 0 341 1 156978 Corynebacterium imitans species 655 1 0 Corynebacterium mustelae species 571915 0 352 1 35755 species Corynebacterium kutscheri 1 200 0 1 456 0 160386 species Corynebacterium casei 1072256 Corynebacterium uterequi species 442 1 0 species Corynebacterium aurimucosum 169292 0 1 678 0 1 566 species Corynebacterium falsenii 108486 1 407 0 89154 species Corynebacterium terpenotabidum Corynebacterium ulcerans species 65058 0 537 1 4 11 1353 0 85028 family 1 Tsukamurellaceae 0 1342 30 3 1 Tsukamurella genus 2060 0 706 1 Tsukamurella tyrosinosolvens species 57704 1 606 0 2061 species Tsukamurella paurometabola 697024 no rank 344 2 0 2 2 344 0 1847725 genus Lawsonella 1 1 342 0 1528099 species Lawsonella clevelandensis 85025 family Nocardiaceae 1 124 31 18258 0 7158 7 221 0 1817 1 Nocardia genus 455432 species Nocardia terpenica 1 1184 0 1 1567 0 135487 species Nocardia cyriacigeorgica 0 1 758 species Nocardia nova 37330 species Nocardia brasiliensis 37326 0 1 1674 0 1 799 species Nocardia seriolae 37332 0 1 955 species Nocardia farcinica 37329 Rhodococcus 1 genus 1827 0 10976 23 404 0 540 1 Rhodococcus jostii species 132919 species Rhodococcus fascians 1828 0 1 471 0 532 1 Rhodococcus erythropolis species 1833 0 1 321 species Rhodococcus rhodochrous 1829 12 5025 0 192944 no rank 1 267 0 1807790 species Rhodococcus sp. BH4 0 1 549 species Rhodococcus sp. MTM3W5.2 1805827 292 1 0 1723645 Rhodococcus sp. 008 species 0 338 1 Rhodococcus sp. p52 species 935199 species Rhodococcus sp. B7740 1564114 0 1 549 1033922 species Rhodococcus sp. WB1 1 693 0 0 1 428 species Rhodococcus sp. PBTS 1 1653478 439 1 0 1570939 Rhodococcus sp. 2G species 679318 species Rhodococcus sp. WMMA185 1 284 0 1 324 0 1045808 species Rhodococcus sp. YL-1 398 1 0 1727214 Rhodococcus sp. H-CA8f species species Rhodococcus sp. PBTS 2 1653479 0 1 464 596 1 0 191292 Rhodococcus aetherivorans species 1 520 0 103816 species Rhodococcus pyridinivorans 0 1 336 species Rhodococcus qingshengii 334542 1163 1 0 37919 Rhodococcus opacus species 1830 Rhodococcus ruber species 537 1 0 species Rhodococcus hoagii 43767 0 1 531 family 1 Segniliparaceae 316606 0 1 3 327 0 326 4 2 1 Segniliparus genus 286801 0 1 322 species Segniliparus rotundus 286802 26008 56 106 0 1762 1 Mycobacteriaceae family 697025 genus 1 319 0 639313 species Hoyosella subflava 1 319 0 0 34 1157 14374 genus 1 Mycobacterium 1763 0 434 1 Mycobacterium ulcerans species 1809 0 1 564 species Mycobacterium marinum 1781 Mycobacterium dioxanotrophicus species 482462 0 627 1 1 347 0 2249310 species group 1 347 0 722731 species Mycobacterium shigaense 2966 8 0 120793 species group 975 247 4 0 1767 Mycobacterium intracellulare 1 species 1 368 0 222805 subspecies Mycobacterium chimaera 0 1 164 subspecies Mycobacterium indicus pranii 35617 1203599 subspecies Mycobacterium yongonense 1 196 0 1764 Mycobacterium avium species 950 1 0 species Mycobacterium colombiense 339268 0 1 508 409 1 0 701042 Mycobacterium marseillense species species Mycobacterium paraintracellulare 1138383 0 1 124 29311 Mycobacterium haemophilum species 353 1 0 2642494 no rank 5777 13 0 0 138 1 Mycobacterium sp. MOTT36Y species 1168287 Mycobacterium sp. JS623 species 212767 0 600 1 1 340 0 189918 species Mycobacterium sp. KMS 1 646 0 1570328 species Mycobacterium sp. NRRL B-3805 467 1 0 2051552 Mycobacterium sp. PYR15 species 0 635 1 Mycobacterium sp. djl-10 species 1879023 0 1 343 species Mycobacterium sp. JLS 164757 Mycobacterium sp. WY10 species 1920667 0 569 1 0 1 566 species Mycobacterium sp. YC-RL4 1682113 1273687 species Mycobacterium sp. VKM Ac-1817D 1 433 0 0 1 236 species Mycobacterium sp. QIA-37 1561223 Mycobacterium sp. EPa45 species 1545728 0 483 1 1 321 0 164756 species Mycobacterium sp. MCS species Mycobacterium leprae 1769 0 1 69 1221 4 0 77643 species group 0 1 373 species Mycobacterium canettii 78331 848 3 307 0 1773 1 Mycobacterium tuberculosis species 0 268 1 Mycobacterium africanum biotype 33894 1765 biotype Mycobacterium bovis 1 273 0 1768 Mycobacterium kansasii species 450 1 0 Mycobacterium liflandii species 261524 0 409 1 genus 670516 0 5 2679 species Mycobacterium stephanolepidis 1520670 0 1 490 Mycobacterium abscessus species 36809 0 920 1 83262 species Mycobacterium immunogenum 1 414 0 423 1 0 1774 Mycobacterium chelonae species Mycobacterium saopaulense species 1578165 0 432 1 930 2 0 1073531 genus 0 1 529 species Mycobacterium terrae 1788 Mycobacterium sinense species 875328 0 401 1 genus 1866885 0 7600 13 0 476 1 Mycobacterium goodii species 134601 0 645 1 Mycobacterium gilvum species 1804 species Mycobacterium vanbaalenii 110539 0 1 503 36814 species Mycobacterium rhodesiae 1 433 0 species Mycobacterium thermoresistibile 1797 0 1 569 1771 Mycobacterium phlei species 657 1 0 1791 species Mycobacterium aurum 1 643 0 758802 Mycobacterium litorale species 636 1 0 606 1 0 1800 Mycobacterium chubuense species 1795 Mycobacterium neoaurum species 646 1 0 1 720 0 1810 species Mycobacterium vaccae 0 1 491 species Mycobacterium fortuitum 1766 0 1 575 species Mycobacterium smegmatis 1772 family 1 Gordoniaceae 85026 0 9 36 3749 genus Gordonia 1 2053 0 87 8 3713 1004901 Gordonia iterans species 402 1 0 84595 Gordonia polyisoprenivorans species 475 1 0 0 536 1 Gordonia terrae species 2055 1 661 0 1136941 species Gordonia phthalatica 2657482 no rank 983 2 0 509 1 0 337191 Gordonia sp. KTR9 species 2059875 Gordonia sp. YC-JH1 species 474 1 0 2054 Gordonia bronchialis species 569 1 0 0 68105 145 82 Streptomycetales 1 order 85011 2062 family Streptomycetaceae 1 504 81 67960 0 0 4291 37 5 Kitasatospora 1 genus 2063 2066 Kitasatospora setae species 1188 1 0 species Kitasatospora aureofaciens 1894 0 1 972 785 1 0 68173 Kitasatospora albolonga species 0 1309 1 no rank 2633591 1309 1 0 2018025 Kitasatospora sp. MMS16-BH015 species 0 75 2162 63165 genus 1 Streptomyces 1883 0 802 1 Streptomyces reticuli species 1926 2049881 Streptomyces sp. XZHG99 species 706 1 0 Streptomyces chartreusis species 1969 0 772 1 1616117 Streptomyces formicae species 796 1 0 species group 1477431 0 2 1502 1 837 0 1902 species Streptomyces coelicolor 1 665 0 42239 species Streptomyces sampsonii 1901 Streptomyces clavuligerus species 662 1 0 0 1 711 species Streptomyces alfalfae 1642299 0 1411 1 Streptomyces venezuelae species 54571 285473 species Streptomyces rubrolavendulae 1 500 0 Streptomyces puniciscabiei species 164348 0 859 1 species Streptomyces scabiei 1930 0 1 934 146923 species Streptomyces parvulus 1 698 0 species Streptomyces leeuwenhoekii 1437453 0 1 756 species Streptomyces bingchenggensis 379067 0 1 1031 species Streptomyces griseochromogenes 68214 0 1 845 1907 species Streptomyces glaucescens 1 658 0 Streptomyces vietnamensis species 362257 0 728 1 Streptomyces gilvosporeus species 553510 0 988 1 species Streptomyces pristinaespiralis 38300 0 1 725 0 716 1 Streptomyces violaceoruber species 1935 0 2208 1 Streptomyces lydicus species 47763 Streptomyces avermitilis species 33903 0 821 1 species Streptomyces albireticuli 1940 0 1 863 646 1 0 193462 Streptomyces niveus species 869 1 0 75293 Streptomyces autolyticus species 629295 species group 2 1364 0 species subgroup 1482596 0 700 1 Streptomyces griseus species 1911 0 700 1 0 1 664 species subgroup 1482558 1 664 0 1908 species Streptomyces globisporus 1971 Streptomyces noursei species 750 1 0 1950 Streptomyces peucetius species 633 1 0 0 1 801 species Streptomyces albulus 68570 1783515 species Streptomyces sp. S10(2016) 1 717 0 0 707 1 Streptomyces xiamenensis species 408015 Streptomyces pratensis species 1169025 0 456 1 68202 species Streptomyces fulvissimus 1 639 0 Streptomyces pluripotens species 1355015 0 475 1 0 1 967 species Streptomyces alboflavus 67267 0 734 1 Streptomyces cyaneogriseus species 68192 species Streptomyces albus 1888 0 1 1618 1914 species Streptomyces lavendulae 1 649 0 0 1 727 species Streptomyces ambofaciens 1889 Streptomyces xinghaiensis species 1038928 0 770 1 68280 Streptomyces violaceusniger species 1045 1 0 1 1592 0 68249 species Streptomyces pactum 0 857 1 Streptomyces malaysiensis species 92644 0 795 1 Streptomyces cattleya species 29303 2593676 no rank 18345 24 0 Streptomyces sp. 3211 species 1964449 0 681 1 species Streptomyces sp. 4F 1751294 0 1 680 0 988 1 Streptomyces sp. CdTB01 species 1725411 species Streptomyces sp. CMB-StM0423 2059884 0 1 987 1561022 Streptomyces sp. CCM_MD2014 species 572 1 0 1841249 Streptomyces sp. RTd22 species 1185 1 0 0 1 575 species Streptomyces sp. CLI2509 1984801 1 648 0 1837283 species Streptomyces sp. S8 0 1 796 species Streptomyces sp. Mg1 465541 1 765 0 1961713 species Streptomyces sp. MOE7 0 1 877 species Streptomyces sp. P3 2135430 1849967 Streptomyces sp. SAT1 species 743 1 0 0 633 1 Streptomyces sp. TN58 species 234612 0 536 1 Streptomyces sp. PAMC 26508 species 1265601 709 1 0 1661694 Streptomyces sp. Tue 6075 species 444103 species Streptomyces sp. CNQ-509 1 852 0 0 1 765 species Streptomyces sp. Sge12 1972846 0 716 1 Streptomyces sp. fd1-xmd species 1812480 0 1 721 species Streptomyces sp. CFMR 7 1649184 625 1 0 862751 Streptomyces sp. SirexAA-E species 1262452 species Streptomyces sp. 769 1 850 0 1495638 Streptomyces sp. M56 species 1122 1 0 species Streptomyces sp. FR-008 206662 0 1 737 2094021 species Streptomyces sp. WAC00288 1 582 0 Streptomyces lincolnensis species 1915 0 859 1 Streptomyces hygroscopicus species 1912 0 1842 1 Streptomyces lividans species 1916 0 862 1 Streptomyces collinus species 42684 0 592 1 0 12443 42 20 1 Micromonosporales order 85008 28056 Micromonosporaceae 1 family 12401 19 134 0 1 Salinispora genus 168694 0 1241 9 3 557 1 0 168697 Salinispora arenicola species 168695 species Salinispora tropica 1 675 0 1873 Micromonospora 1 genus 3084 4 49 0 1063 1 0 2617518 no rank species Micromonospora sp. L5 648999 0 1 1063 Micromonospora aurantiaca species 47850 0 1001 1 1003110 Verrucosispora maris species 971 1 0 4 66 2876 0 673534 genus Plantactinospora 1 2631981 no rank 3 2810 0 0 1 1124 species Plantactinospora sp. KBS50 2024580 2108470 species Plantactinospora sp. BC1 1 862 0 0 824 1 Plantactinospora sp. BB1 species 2071627 0 1 2 genus Verrucosispora 84593 0 113 6 5064 genus Actinoplanes 1 1865 no rank 2626549 0 3 2915 0 1 981 species Actinoplanes sp. SE50 2033844 649831 species Actinoplanes sp. N902-109 1 953 0 species Actinoplanes sp. SE50/110 134676 0 1 981 Actinoplanes friuliensis species 196914 0 1095 1 0 941 1 Actinoplanes missouriensis species 1866 0 4 3 228 order 1 Acidothermales 1643683 Acidothermaceae 1 family 85032 0 225 3 3 222 2 1 0 28048 1 Acidothermus genus 0 1 221 species Acidothermus cellulolyticus 28049 1 Geodermatophilales order 1643682 0 2115 8 14 0 2101 7 39 Geodermatophilaceae 1 family 85030 genus 1 Modestobacter 88138 0 13 2 798 477641 Modestobacter marinus species 785 1 0 10 2 638 0 1860 genus Geodermatophilus 1 1861 Geodermatophilus obscurus species 628 1 0 2 2 626 0 38501 genus Blastococcus 1 species Blastococcus saxobsidens 138336 0 1 624 600 3 0 622450 order 622451 1 Actinopolysporaceae family 600 3 35 0 genus Actinopolyspora 1 1849 0 2 10 565 0 555 1 Actinopolyspora erythraea species 414996 Pseudonocardiales 1 order 85010 0 23360 75 42 0 365 41 23285 family Pseudonocardiaceae 1 2070 0 2 5 1129 genus 1 Saccharothrix 2071 0 1 1124 species Saccharothrix espanaensis 103731 0 2 4 674 genus Prauserella 1 142577 530584 Prauserella marina species 670 1 0 1851 Saccharomonospora 1 genus 285 1 2 0 0 284 1 Saccharomonospora viridis species 1852 2029 1 Kibdelosporangium genus 886 2 5 0 860235 Kibdelosporangium phytohabitans species 881 1 0 2 7 1182 0 43356 genus Kutzneria 1 43357 species Kutzneria albida 1 1175 0 0 4 2 815 genus 1 Lentzea 165301 0 1 811 species Lentzea guizhouensis 1586287 0 6 62 2923 genus Actinoalloteichus 1 65496 2644606 no rank 1170 2 0 0 597 1 Actinoalloteichus sp. GBA129-24 species 1612551 2072503 species Actinoalloteichus sp. AHMU CJ021 1 573 0 species Actinoalloteichus sp. ADI127-7 1612552 0 1 601 340345 species Actinoalloteichus hymeniacidonis 1 507 0 species Actinoalloteichus hoggarensis 1470176 0 1 583 8 141 4557 0 1847 genus 1 Pseudonocardia Pseudonocardia dioxanivorans species 240495 0 638 1 no rank 2619320 0 3778 6 species Pseudonocardia sp. EC080610-09 1688404 0 1 636 733 1 0 445576 Pseudonocardia sp. AL041005-10 species 1641402 Pseudonocardia sp. HH130629-09 species 570 1 0 Pseudonocardia sp. EC080619-01 species 1096856 0 641 1 Pseudonocardia sp. HH130630-07 species 1690815 0 620 1 0 1 578 species Pseudonocardia sp. EC080625-04 1096868 842 4 2 0 674734 Alloactinosynnema 1 genus no rank 2636053 0 1 838 838 1 0 1653480 Alloactinosynnema sp. L-07 species 2516 65 3 0 40566 Actinosynnema 1 genus 1 1221 0 40567 species Actinosynnema mirum Actinosynnema pretiosum species 42197 0 1230 1 genus Saccharopolyspora 1 1835 0 2 2 959 1836 species Saccharopolyspora erythraea 1 957 0 6152 7 71 0 1813 Amycolatopsis 1 genus 1814 Amycolatopsis methanolica species 889 1 0 species Amycolatopsis japonica 208439 0 1 851 species Amycolatopsis mediterranei 33910 0 1 1006 0 1741 2 no rank 2618356 1896961 species Amycolatopsis sp. AA4 1 954 0 0 787 1 Amycolatopsis sp. BJA-103 species 1911175 species Amycolatopsis orientalis 31958 0 1 1594 Candidatus Nanopelagicales 1 order 2039638 0 1692 7 12 family 2162846 0 11 1685 622681 genus 1 Candidatus Planktophila 7 8 1373 0 1884907 species Candidatus Planktophila vernalis 1 148 0 1884914 Candidatus Planktophila dulcis species 211 1 0 0 185 1 Candidatus Planktophila lacus species 1884913 1884904 species Candidatus Planktophila sulfonica 1 318 0 0 401 1 Candidatus Planktophila versatilis species 1884905 Candidatus Planktophila limnetica species 573600 0 102 1 0 1 4 312 genus Candidatus Nanopelagicus 1 2039639 Candidatus Nanopelagicus hibericus species 1884915 0 174 1 0 1 73 species Candidatus Nanopelagicus limnes 1884634 1 64 0 1884916 species Candidatus Nanopelagicus abundans 0 3 813 order 622452 3 14 813 0 83778 family Kineosporiaceae 1 1 Kineococcus genus 33981 0 799 1 2 798 1 0 131568 Kineococcus radiotolerans species 85012 Streptosporangiales 1 order 7684 61 16 0 family Streptosporangiaceae 1 2004 0 5 48 3426 2120 2 12 0 83681 Nonomuraea 1 genus 2593643 no rank 2108 1 0 Nonomuraea sp. ATCC 55076 species 1909395 0 2108 1 genus 1 Streptosporangium 2000 0 13 2 1258 0 1 1245 species Streptosporangium roseum 2001 0 1265 3 15 Thermomonosporaceae 1 family 2012 2019 Thermomonospora 1 genus 1250 2 10 0 2020 Thermomonospora curvata species 1240 1 0 0 2932 53 7 Nocardiopsaceae 1 family 83676 1 Thermobifida genus 83677 0 393 2 3 2021 species Thermobifida fusca 1 390 0 0 4 31 2486 genus 1 Nocardiopsis 2013 0 1 868 species Nocardiopsis gilva 280236 Nocardiopsis dassonvillei species 2014 0 987 1 1 600 0 53437 species Nocardiopsis alba 0 14 19 12689 order 1 Actinomycetales 2037 1421 18 12675 0 2049 family Actinomycetaceae 1 1069494 genus Trueperella 1 2 5 897 0 0 1 892 species Trueperella pyogenes 1661 genus 2529408 0 1405 1 52773 species Actinomyces meyeri 1 1405 0 1653174 genus 1 Actinotignum 2 2 418 0 Actinotignum schaalii species 59505 0 416 1 Mobiluncus 1 genus 2050 0 1382 2 38 Mobiluncus curtisii species 2051 0 1344 1 6820 86 9 0 1654 Actinomyces 1 genus 1 408 0 1912795 species Actinomyces sp. VUL4_3 523 1 0 1960083 Actinomyces gaoshouyii species 0 1 853 species Actinomyces oris 544580 3 2101 0 2609248 no rank 0 1 812 species Actinomyces sp. oral taxon 414 712122 Actinomyces sp. oral taxon 897 species 2081702 0 575 1 1851395 species Actinomyces sp. Chiba101 1 714 0 1852377 species Actinomyces pacaensis 1 2027 0 111015 species Actinomyces radicidentis 1 822 0 genus 28263 0 1 332 28264 Arcanobacterium haemolyticum species 332 1 0 85014 order 1 Glycomycetales 4 6 847 0 85034 Glycomycetaceae 1 family 841 17 3 0 0 2 1 824 genus 1 Stackebrandtia 283810 0 823 1 Stackebrandtia nassauensis species 283811 1 204 0 52018 no rank 1650658 species Actinobacteria bacterium IMCC26256 1 204 0 36 7 2698 0 85013 order 1 Frankiales 2662 6 28 0 74712 1 Frankiaceae family genus Frankia 1 1854 0 5 36 2634 2632575 no rank 1 698 0 1 698 0 298653 species Frankia sp. EAN1pec species Frankia inefficax 298654 0 1 773 106370 species Frankia casuarinae 1 408 0 0 719 1 Frankia alni species 1859 4 2 739 0 1643684 order 1 Nakamurellales 1 Nakamurellaceae family 85031 0 737 40 3 1 Nakamurella genus 53460 0 697 2 32 53461 Nakamurella multipartita species 665 1 0 0 56 33 13272 order 1 Propionibacteriales 85009 1 Propionibacteriaceae family 31957 0 8699 19 220 0 5 21 2740 genus Tessaracoccus 1 72763 0 786 1 no rank 2635419 1909732 Tessaracoccus sp. T2.5-30 species 786 1 0 species Tessaracoccus flavescens 399497 0 1 565 0 1 615 species Tessaracoccus flavus 1610493 0 753 1 Tessaracoccus aquimaris species 1332264 1743 genus Propionibacterium 1 3 51 1522 0 1 391 0 2608905 no rank Propionibacterium sp. oral taxon 193 species 671223 0 391 1 1080 1 0 1744 Propionibacterium freudenreichii species 605 1 0 2801844 genus 0 1 605 species Pseudopropionibacterium propionicum 1750 29404 Microlunatus 1 genus 535 2 4 0 species Microlunatus phosphovorus 29405 0 1 531 0 6 4 1439 genus 1 Cutibacterium 1912216 695 1 0 33010 Cutibacterium avidum species 1 439 0 1747 species Cutibacterium acnes 33011 Cutibacterium granulosum species 299 1 0 1 Acidipropionibacterium genus 1912215 0 865 2 11 Acidipropionibacterium acidipropionici species 1748 0 854 1 203133 genus 1 773 0 1 773 0 2633994 no rank 0 1 773 species Propionimicrobium sp. Marseille-P3275 1871034 1 Nocardioidaceae family 85015 0 4517 13 76 1906 4 61 0 1839 Nocardioides 1 genus 2615069 no rank 1 652 0 0 652 1 Nocardioides sp. JS614 species 196162 1 657 0 450734 species Nocardioides dokdonensis Nocardioides sp. 78 species 2045452 0 536 1 0 10 2 511 genus 1 Aeromicrobium 2040 Aeromicrobium erythreum species 2041 0 501 1 genus Pimelobacter 1 2044 0 36 2 716 1 680 0 2045 species Pimelobacter simplex 116071 Micropruina 1 genus 567 7 2 0 0 1 560 species Micropruina glycogenica 75385 genus Kribbella 1 182639 0 6 2 741 735 1 0 182640 Kribbella flavida species 54127 142 516 0 85006 Micrococcales 1 order no rank 577468 0 2 38 2038 genus Tropheryma 1 3 2 38 0 2039 Tropheryma whipplei species 35 1 0 8 39 2773 0 85017 family Promicromonosporaceae 1 254250 genus Isoptericola 1 3 22 1058 0 139208 species Isoptericola variabilis 1 587 0 Isoptericola dokdonensis species 372663 0 449 1 genus 186188 0 1 602 186189 species Xylanimonas cellulosilytica 1 602 0 1074 3 19 0 157920 Cellulosimicrobium 1 genus 2624466 no rank 441 1 0 1980001 species Cellulosimicrobium sp. TH-20 1 441 0 0 1 614 species Cellulosimicrobium cellulans 1710 family Micrococcaceae 1 1268 0 38 650 20294 Pseudarthrobacter 1 genus 1742993 0 1868 4 24 121292 Pseudarthrobacter sulfonivorans species 697 1 0 361575 Pseudarthrobacter phenanthrenivorans species 549 1 0 0 598 1 Pseudarthrobacter chlorophenolicus species 85085 genus 2078575 0 1 371 Arthrobacter sp. IHBB 11108 species 1618207 0 371 1 Micrococcus 1 genus 1269 0 547 2 12 1270 Micrococcus luteus species 535 1 0 0 575 2 26 Sinomonas 1 genus 596707 0 1 549 species Sinomonas atrocyanea 37927 741 2 16 0 1868332 Neomicrococcus 1 genus 556325 Neomicrococcus aestuarii species 725 1 0 genus Paenarthrobacter 1 1742992 0 2 2 493 0 1 491 species Paenarthrobacter aurescens 43663 Arthrobacter 1 genus 1663 0 9912 15 179 7631 12 0 235627 no rank 1118963 species Arthrobacter sp. Rue61a 1 478 0 2020486 Arthrobacter sp. YN species 506 1 0 species Arthrobacter sp. PGP41 2079227 0 1 580 0 1 443 species Arthrobacter sp. ZXY-2 1806905 0 777 1 Arthrobacter sp. U41 species 1849032 species Arthrobacter sp. ERGS1:01 1704044 0 1 633 0 541 1 Arthrobacter sp. PAMC 25486 species 1494608 1771959 Arthrobacter sp. ATCC 21022 species 354 1 0 905 1 0 1690248 Arthrobacter sp. LS16 species 1357915 Arthrobacter sp. QXT-31 species 768 1 0 0 994 1 Arthrobacter sp. YC-RL1 species 1652545 Arthrobacter sp. FB24 species 290399 0 652 1 656366 species Arthrobacter alpinus 1 1272 0 37928 species Arthrobacter crystallopoietes 1 830 0 57493 Kocuria 1 genus 1512 4 16 0 0 494 1 Kocuria rhizophila species 72000 0 1 471 species Kocuria palustris 71999 Kocuria flava species 446860 0 531 1 genus Rothia 1 32207 0 3 10 2223 0 1732 1 Rothia mucilaginosa species 43675 481 1 0 2047 Rothia dentocariosa species 0 160 1 genus 1645 0 160 1 Renibacterium salmoninarum species 1646 genus 1742989 0 1242 1 species Glutamicibacter arilaitensis 256701 0 1 1242 0 1225 2 3 1 Brevibacteriaceae family 85019 genus 1 Brevibacterium 1696 0 2 62 1223 1 1161 0 1703 species Brevibacterium linens 1 Cellulomonadaceae family 85016 0 2325 6 44 0 48 5 2281 genus Cellulomonas 1 1707 1708 species Cellulomonas fimi 1 641 0 11 species Cellulomonas gilvus 1 591 0 0 1 525 species Cellulomonas flavigena 1711 2620175 no rank 1 476 0 476 1 0 2003551 Cellulomonas sp. PSBB021 species 145357 1 Dermacoccaceae family 1730 10 7 0 genus Kytococcus 1 57499 0 4 2 591 species Kytococcus sedentarius 1276 0 1 587 470 2 2 0 57495 Dermacoccus 1 genus 1 468 0 1274 species Dermacoccus nishinomiyaensis 1 Luteipulveratus genus 745364 0 659 2 8 571913 species Luteipulveratus mongoliensis 1 651 0 48 197 16932 0 85023 family Microbacteriaceae 1 Leifsonia 1 genus 110932 0 1187 2 9 0 1178 1 Leifsonia xyli species 1575 Aurantimicrobium 1 genus 1705353 0 173 2 2 708131 Aurantimicrobium minutum species 171 1 0 623 5 3 0 33886 1 Rathayibacter genus species Rathayibacter tritici 33888 0 1 446 species Rathayibacter toxicus 145458 0 1 172 genus Agromyces 1 33877 0 2 4 691 1 687 0 453304 species Agromyces aureus genus 1434032 0 141 1 Pontimonas salivibrio species 1159327 0 141 1 genus 337004 0 324 1 0 324 1 Microcella alkaliphila species 279828 69578 genus Cryobacterium 1 3 35 1601 0 670052 Cryobacterium arcticum species 668 1 0 1 898 0 2649013 no rank 0 1 898 species Cryobacterium sp. LW097 1978566 0 502 3 2 Microterricola 1 genus 518733 1 499 0 412690 species Microterricola viridarii 1759331 Cnuibacter 1 genus 427 2 2 0 1 425 0 1619308 species Cnuibacter physcomitrellae 0 6621 161 14 Microbacterium 1 genus 33882 617 1 0 36805 Microbacterium aurum species 481 1 0 2033 Microbacterium testaceum species 0 422 1 Microbacterium paludicola species 300019 no rank 2609290 0 8 4049 0 423 1 Microbacterium sp. CGR1 species 1696072 species Microbacterium sp. str. 'China' 2103230 0 1 555 1795053 Microbacterium sp. PAMC 28756 species 627 1 0 1 385 0 1938334 species Microbacterium sp. TPU 3598 Microbacterium sp. XT11 species 367477 0 564 1 1916917 Microbacterium sp. 1.5R species 398 1 0 1714373 species Microbacterium sp. No. 7 1 552 0 Microbacterium sp. BH-3-3-3 species 1906742 0 545 1 0 358 1 Microbacterium chocolatum species 84292 162426 species Microbacterium hominis 1 533 0 1573 genus 1 Clavibacter 6 105 1936 0 1831 326 5 0 28447 Clavibacter michiganensis 1 species Clavibacter capsici subspecies 1874630 0 421 1 33014 subspecies Clavibacter insidiosus 1 315 0 1 405 0 31964 subspecies Clavibacter sepedonicus Clavibacter nebraskensis subspecies 31963 0 364 1 no rank 1655488 0 633 3 0 633 3 clade 1655489 genus Rhodoluna 1 529883 0 3 2 633 species Rhodoluna lacicola 529884 0 1 322 535712 Candidatus Rhodoluna planktonica species 309 1 0 1452 27 4 0 2034 Curtobacterium 1 genus 1 519 0 69373 species Curtobacterium pusillum 2 906 0 257496 no rank species Curtobacterium sp. MR_MD2014 1561023 0 1 422 1905847 species Curtobacterium sp. BH-2-1-1 1 484 0 genus 1 Frondihabitans 447237 0 1 2 424 423 1 0 2626248 no rank 1795630 species Frondihabitans sp. PAMC 28766 1 423 0 0 2282 9 19 1 Intrasporangiaceae family 85021 53457 Janibacter 1 genus 597 2 4 0 857417 species Janibacter indicus 1 593 0 2 3 663 0 267408 genus 1 Arsenicicoccus no rank 2663846 0 1 660 1 660 0 1658671 species Arsenicicoccus sp. oral taxon 190 53357 genus Intrasporangium 1 2 5 359 0 354 1 0 53358 Intrasporangium calvum species genus 1 Serinicoccus 265976 0 38 2 644 Serinicoccus sp. JLT9 species 1758689 0 606 1 662 7 3 0 145360 Sanguibacteraceae 1 family 2 46 655 0 60919 genus Sanguibacter 1 0 1 609 species Sanguibacter keddieii 60920 85020 Dermabacteraceae 1 family 4140 17 9 0 1 384 0 36739 genus 1630135 Dermabacter vaginalis species 384 1 0 0 3477 37 6 1 Brachybacterium genus 43668 2623841 no rank 1 633 0 0 633 1 Brachybacterium sp. P6-10-X1 species 1903186 2017485 species Brachybacterium sp. VR2415 1 588 0 2017484 Brachybacterium sp. VM2412 species 657 1 0 Brachybacterium faecium species 43669 0 840 1 1 722 0 1331682 species Brachybacterium ginsengisoli 472568 genus 1 262 0 species Devriesea agamarum 472569 0 1 262 125316 family Beutenbergiaceae 1 1 3 597 0 0 596 9 2 1 Beutenbergia genus 84756 Beutenbergia cavernae species 84757 0 587 1 Dermatophilaceae 1 family 85018 0 352 1 3 351 26 2 0 1862 Dermatophilus 1 genus species Dermatophilus congolensis 1863 0 1 325 0 261 2 family 85022 0 261 2 1 1 Jonesia genus 43673 43674 Jonesia denitrificans species 260 1 0 1170 7 7 0 84992 1 Acidimicrobiia class 84993 1 Acidimicrobiales order 1163 41 6 0 family 2448023 0 834 2 834 2 1 0 682522 1 Ilumatobacter genus 467094 Ilumatobacter coccineus species 833 1 0 1 Acidimicrobiaceae family 84994 0 288 6 3 0 2 1 282 genus Acidimicrobium 1 53634 Acidimicrobium ferrooxidans species 53635 0 281 1 67819 phylum 482 5 0 1663419 class 1 Fimbriimonadia 2 5 482 0 1663425 Fimbriimonadales 1 order 480 4 1 0 0 479 2 3 Fimbriimonadaceae 1 family 1663426 0 2 4 477 genus 1 Fimbriimonas 1005038 species Fimbriimonas ginsengisoli 1005039 0 1 473 1798711 clade 140 39569 0 1117 phylum Cyanobacteria 1 4 140 39569 0 0 16775 148 54 Synechococcales 1 order 1890424 0 1771 3 6 Leptolyngbyaceae 1 family 1890438 0 1768 5 4 Leptolyngbya 1 genus 47251 no rank 2650499 0 1480 3 0 1 360 species Leptolyngbya sp. NIES-3755 1752064 0 245 1 Leptolyngbya sp. PCC 7376 species 111781 0 875 1 Leptolyngbya sp. O-77 species 1080068 0 1 284 species Leptolyngbya boryana 1184 1 701 0 2303730 family 170610 genus 701 1 0 Halomicronema hongdechloris species 1209493 0 701 1 0 10744 35 33 1 Synechococcaceae family 1890426 genus 146785 0 1 184 146786 Thermosynechococcus elongatus species 184 1 0 0 1871 3 35 1 Cyanobium genus 167375 0 1 846 species Cyanobium gracile 59930 2627006 no rank 990 1 0 1 990 0 1851505 species Cyanobium sp. NIES-981 1129 genus Synechococcus 1 26 129 8524 0 0 244 1 Synechococcus lividus species 33070 species Synechococcus elongatus 32046 0 1 248 0 7903 23 no rank 2626047 Synechococcus sp. PCC 7003 species 374981 0 272 1 Synechococcus sp. KORDI-100 species 1280380 0 317 1 274 1 0 166314 Synechococcus sp. WH 8109 species 0 1 246 species Synechococcus sp. PCC 7502 1173263 Synechococcus sp. JA-2-3B'a(2-13) species 321332 0 496 1 1 660 0 84588 species Synechococcus sp. WH 8102 Synechococcus sp. WH 7803 species 32051 0 523 1 1 379 0 110662 species Synechococcus sp. CC9605 195253 species Synechococcus sp. PCC 6312 1 158 0 524 1 0 316278 Synechococcus sp. RCC307 species 374982 species Synechococcus sp. PCC 73109 1 171 0 Synechococcus sp. CC9902 species 316279 0 421 1 585425 species Synechococcus sp. KORDI-52 1 337 0 585423 Synechococcus sp. KORDI-49 species 311 1 0 32049 species Synechococcus sp. PCC 7002 1 199 0 0 1 657 species Synechococcus sp. JA-3-3Ab 321327 0 174 1 Synechococcus sp. PCC 7117 species 195498 64471 Synechococcus sp. CC9311 species 134 1 0 1 240 0 1827144 species Synechococcus sp. NIES-970 227 1 0 1350461 Synechococcus sp. UTEX 2973 species 29410 species Synechococcus sp. WH 8103 1 620 0 0 1 395 species Synechococcus sp. SynAce01 1916956 Synechococcus sp. PCC 8807 species 195248 0 168 1 0 130 2 7 Dactylococcopsis 1 genus 13034 123 1 0 292566 Dactylococcopsis salina species family 1890429 0 551 1 1 551 0 155977 genus 0 551 1 Acaryochloris marina species 155978 0 304 2 family 1890436 0 304 2 1 Pseudanabaena 1 genus 1152 1 303 0 2593292 no rank 303 1 0 82654 Pseudanabaena sp. PCC 7367 species 1 5 1712 0 1213 family Prochloraceae 1 1218 1 Prochlorococcus genus 1711 2 4 0 Prochlorococcus marinus species 1219 0 1295 1 no rank 2627481 0 2 414 species Prochlorococcus sp. MIT 0604 1501268 0 1 226 species Prochlorococcus sp. MIT 0801 1501269 0 1 188 1 Merismopediaceae family 1890428 0 844 5 2 842 4 4 0 1142 Synechocystis 1 genus 2640012 no rank 3 838 0 1147 species Synechocystis sp. PCC 6714 1 276 0 species Synechocystis sp. IPPAS B-1465 2116702 0 1 281 species Synechocystis sp. PCC 6803 1148 0 1 281 0 1 213 no rank 1983111 213 1 0 718217 cyanobacterium endosymbiont of Epithemia turgida species 0 1348 12 6 Gloeobacteria 1 class 307596 Gloeobacterales 1 order 307595 0 1336 5 28 1890422 family 1 Gloeobacteraceae 4 27 1308 0 0 27 3 1281 genus Gloeobacter 1 33071 33072 Gloeobacter violaceus species 698 1 0 556 1 0 1416614 Gloeobacter kilaueensis species 52604 order 4 1041 0 1890500 family 418 1 0 genus 44474 0 1 418 0 418 1 Pleurocapsa minor species 54308 family Dermocarpellaceae 1 1890498 0 4 3 623 genus 102115 0 619 2 no rank 2642663 0 287 1 0 287 1 Stanieria sp. NIES-3757 species 1807358 0 1 332 species Stanieria cyanosphaera 102116 Chroococcidiopsidales 1 order 1890505 0 212 2 4 210 3 4 0 1890528 1 Chroococcidiopsidaceae family 206 2 1 0 54298 1 Chroococcidiopsis genus 54299 Chroococcidiopsis thermalis species 205 1 0 9382 40 0 1301283 subclass 1118 Chroococcales 1 order 5881 23 9 0 1 Cyanobacteriaceae family 1890452 0 648 2 5 102234 genus 643 1 0 0 643 1 Cyanobacterium aponinum species 379064 0 7 4 1952 family 1 Chroococcaceae 1890464 0 1 447 genus 268175 2648896 no rank 1 447 0 species Chondrocystis sp. NIES-4102 2005460 0 1 447 1 2 438 0 102231 genus Gloeocapsa 1 1 437 0 2623012 no rank Gloeocapsa sp. PCC 7428 species 1173026 0 437 1 669357 genus Geminocystis 1 3 1 1063 0 1062 2 0 2625037 no rank 0 530 1 Geminocystis sp. NIES-3708 species 1615909 1617448 Geminocystis sp. NIES-3709 species 532 1 0 1890450 family 1 Aphanothecaceae 2 9 2451 0 0 108 1 genus 1453359 Candidatus Atelocyanobacterium thalassa species 713887 0 108 1 0 2 1023 genus 28070 589 1 0 2546356 species 589 1 0 65393 Cyanothece sp. PCC 7424 strain 1 434 0 2546359 species 434 1 0 497965 Cyanothece sp. PCC 7822 strain 1 239 0 263510 genus species 2546360 0 1 239 239 1 0 43989 Cyanothece sp. ATCC 51142 strain 0 2 220 no rank 92682 76023 genus 1 Halothece 8 2 220 0 no rank 2632878 0 212 1 Halothece sp. PCC 7418 species 65093 0 212 1 2546365 genus 2 859 0 859 2 0 2546366 species 487 1 0 41431 Cyanothece sp. PCC 8801 strain 395962 Cyanothece sp. PCC 8802 strain 372 1 0 0 4 3 821 family 1 Microcystaceae 1890449 10 3 818 0 1125 genus Microcystis 1 563 1 0 1126 Microcystis aeruginosa species 2643300 no rank 245 1 0 Microcystis sp. MC19 species 1967666 0 245 1 1150 Oscillatoriales 1 order 3501 11 17 0 2 1 427 0 1892255 family 1 Gomontiellaceae 0 426 1 genus 241421 1 426 0 241425 species Crinalium epipsammum 663 4 3 0 1892251 Coleofasciculaceae 1 family 659 2 2 0 63132 1 Geitlerinema genus 1 657 0 2648775 no rank 1173025 Geitlerinema sp. PCC 7407 species 657 1 0 0 784 4 2 Microcoleaceae 1 family 1892252 384 1 2 0 1205 Trichodesmium 1 genus 0 1 383 species Trichodesmium erythraeum 1206 genus 44471 0 398 1 398 1 0 2642155 no rank 0 1 398 species Microcoleus sp. PCC 7113 1173027 1371 4 7 0 1892254 Oscillatoriaceae 1 family genus 1158 0 2 970 1 549 0 482564 species Oscillatoria nigro-viridis 118323 Oscillatoria acuminata species 421 1 0 0 394 1 genus 1155738 394 1 0 1155739 Moorea producens species 0 245 3 10 1 Cyanothecaceae family 1892249 0 2 13 235 genus Cyanothece 1 43988 222 1 0 2649277 no rank 0 1 222 species Cyanothece sp. PCC 7425 395961 Nostocales 1 order 1161 0 10594 31 30 1 491 0 1219117 no rank 491 1 0 1940762 Nostocales cyanobacterium HT-58-2 species 0 2946 8 family 2661849 genus 1 Calothrix 1186 0 8 8 2946 468 1 0 32054 Calothrix parietina species 2619626 no rank 6 2470 0 species Calothrix sp. NIES-4071 2005469 0 1 629 0 277 1 Calothrix sp. 336/3 species 1337936 0 508 1 Calothrix sp. NIES-4101 species 2005461 species Calothrix sp. PCC 7507 99598 0 1 411 species Calothrix sp. NIES-3974 2005462 0 1 332 Calothrix sp. NIES-2098 species 1954171 0 313 1 1892263 family 300 1 0 300 1 0 1190 genus 0 300 1 no rank 494603 300 1 0 1752063 Fischerella sp. NIES-3754 species 1162 1 Nostocaceae family 6063 5 17 0 genus 1163 0 1027 3 0 315 1 Anabaena cylindrica species 1165 0 712 2 no rank 2619674 1647413 species Anabaena sp. WA102 1 339 0 373 1 0 46234 Anabaena sp. 90 species 1 Nostoc genus 1177 0 4095 10 63 0 7 2658 no rank 2593658 1 223 0 317936 species Nostoc sp. PCC 7107 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 1261031 0 607 1 Nostoc sp. PCC 7120 species 103690 0 429 1 1751286 species Nostoc sp. NIES-3756 1 282 0 0 349 1 Nostoc sp. CENA543 species 1869241 1618022 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1 431 0 337 1 0 28072 Nostoc sp. PCC 7524 species 1306274 Nostoc flagelliforme species 920 1 0 272131 Nostoc punctiforme species 454 1 0 264688 Trichormus 1 genus 936 3 1 0 1164 species Trichormus azollae 1 345 0 264691 Trichormus variabilis species 590 1 0 1185 family Rivulariaceae 1 2 14 763 0 0 749 1 genus 373984 no rank 2676603 0 1 749 0 749 1 Rivularia sp. PCC 7116 species 373994 2 227 0 1859062 no rank 2 2 227 0 262406 genus 1 Thermobaculum 0 1 225 species Thermobaculum terrenum 166501 no rank 2323 0 2 295 clade 1783234 0 2 295 95901 clade 204 1 0 class 2497643 0 204 1 1 204 0 2497644 order 0 1 204 family 2497645 genus 1551504 0 204 1 0 204 1 Candidatus Babela massiliensis species 673862 phylum 95818 0 91 1 91 1 0 1895827 no rank 0 1 91 species Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 200930 phylum 2510 10 0 2510 10 3 0 68337 1 Deferribacteres class 16 9 2507 0 191393 order 1 Deferribacterales 0 2491 8 5 1 Deferribacteraceae family 191394 117999 Denitrovibrio 1 genus 515 2 1 0 0 514 1 Denitrovibrio acetiphilus species 118000 0 1018 1 genus 545865 1 1018 0 477976 species Calditerrivibrio nitroreducens 2 1 495 0 2351 genus 1 Flexistipes Flexistipes sinusarabici species 2352 0 494 1 53572 genus Deferribacter 1 2 2 458 0 0 456 1 Deferribacter desulfuricans species 197162 1224 phylum Proteobacteria 1 422 1983 1032541 0 0 114897 197 subphylum 68525 Deltaproteobacteria 1 class 28221 0 79771 128 267 157 26 21522 0 213115 order Desulfovibrionales 1 213116 1 Desulfomicrobiaceae family 1913 13 4 0 0 3 11 1900 genus 1 Desulfomicrobium 898 species Desulfomicrobium baculatum 899 0 1 968 0 1 921 species Desulfomicrobium orale 132132 450 1 3 0 213117 Desulfohalobiaceae 1 family 0 2 3 449 genus 1 Desulfohalobium 45662 1 446 0 45663 species Desulfohalobium retbaense 1 Desulfovibrionaceae family 194924 0 19002 134 18 2582840 genus 1 1067 0 1067 1 0 873 Desulfovibrio africanus species 0 1 2 293 genus Lawsonia 1 41707 1 292 0 29546 species Lawsonia intracellularis 9 142 12941 0 872 genus 1 Desulfovibrio 1 1457 0 44742 species Desulfovibrio fairfieldensis 421 1 0 1725232 Candidatus Desulfovibrio trichonymphae species 0 2457 1 Desulfovibrio piger species 901 species Desulfovibrio alaskensis 58180 0 1 1135 184917 Desulfovibrio magneticus species 1353 1 0 0 720 1 no rank 2593640 Desulfovibrio sp. G11 species 631220 0 720 1 2158 1 0 876 Desulfovibrio desulfuricans species 3098 1 0 881 Desulfovibrio vulgaris species 2794998 genus 1 1032 0 species Desulfovibrio salexigens 880 0 1 1032 0 4 18 3535 genus Pseudodesulfovibrio 1 2035811 species Pseudodesulfovibrio profundus 57320 0 1 815 1 1452 0 1716143 species Pseudodesulfovibrio indicus 1250 1 0 182210 Pseudodesulfovibrio aespoeensis species 0 18551 238 23 Desulfuromonadales 1 order 69541 6240 93 9 0 213421 1 Desulfuromonadaceae family 18 1 Pelobacter genus 3790 61 5 0 19 species Pelobacter carbinolicus 1 841 0 29542 Pelobacter acetylenicus species 817 1 0 663 1 0 2620299 no rank 1 663 0 1842532 species Pelobacter sp. SFB93 1 1408 0 29543 species Pelobacter propionicus 2357 3 17 0 890 Desulfuromonas 1 genus 0 1 1270 no rank 2614637 0 1270 1 Desulfuromonas sp. DDH964 species 1823759 1603606 species Desulfuromonas soudanensis 1 1070 0 213422 family 1 Geobacteraceae 71 13 12073 0 11101 11 139 0 28231 Geobacter 1 genus 313985 Geobacter lovleyi species 1203 1 0 1 1048 0 225194 species Geobacter bemidjiensis 1340425 Geobacter anodireducens species 1121 1 0 35554 species Geobacter sulfurreducens 1 958 0 species Geobacter pickeringii 345632 0 1 1019 Geobacter uraniireducens species 351604 0 883 1 0 2683 2 no rank 2627627 443144 Geobacter sp. M21 species 1401 1 0 1 1282 0 443143 species Geobacter sp. M18 0 1 1002 species Geobacter daltonii 1203471 28232 species Geobacter metallireducens 1 1045 0 392332 genus 901 1 0 species Geoalkalibacter subterraneus 483547 0 1 901 Myxococcales 1 order 29 0 28277 38 400 80812 suborder 5436 8 0 49 family Polyangiaceae 1 5 21 4311 0 50 1 Chondromyces genus 896 2 1 0 Chondromyces crocatus species 52 0 895 1 0 3394 20 2 Sorangium 1 genus 39643 0 3374 1 Sorangium cellulosum species 56 1055686 Sandaracinaceae 1 family 1125 14 3 0 1111 2 21 0 1055688 Sandaracinus 1 genus 927083 species Sandaracinus amylolyticus 1 1090 0 0 26 21093 suborder 80811 0 9 103 6021 family 1 Archangiaceae 39 1313 4 2 0 40 1 Stigmatella genus 1 1309 0 41 species Stigmatella aurantiaca 42 genus 1 Cystobacter 2 23 1601 0 1578 1 0 43 Cystobacter fuscus species 1419 2 21 0 47 Archangium 1 genus 1398 1 0 48 Archangium gephyra species Melittangium 1 genus 44 0 1585 16 2 83453 species Melittangium boletus 1 1569 0 33 5 4277 0 1524215 family 1 Anaeromyxobacteraceae 161492 Anaeromyxobacter 1 genus 4244 4 56 0 161493 species Anaeromyxobacter dehalogenans 1 2144 0 no rank 2620896 0 2044 2 1148 1 0 447217 Anaeromyxobacter sp. K species species Anaeromyxobacter sp. Fw109-5 404589 0 1 896 0 9 70 10088 family Myxococcaceae 1 31 genus 1 Corallococcus 83461 0 3 44 3365 1851 1 0 184914 Corallococcus coralloides species 0 1470 1 Myxococcus macrosporus species 35 5 182 6653 0 32 genus 1 Myxococcus 1 1180 0 34 species Myxococcus xanthus 83455 species Myxococcus stipitatus 1 1336 0 1 2840 0 33 species Myxococcus fulvus 1115 1 0 1297742 Myxococcus hansupus species 707 2 3 0 1524213 1 Vulgatibacteraceae family 1524214 genus 1 Vulgatibacter 2 6 705 0 species Vulgatibacter incomptus 1391653 0 1 699 suborder 224462 0 1348 3 0 3 11 1348 family 1 Kofleriaceae 224464 12 2 1337 0 162027 genus 1 Haliangium Haliangium ochraceum species 80816 0 1325 1 Syntrophobacterales 1 order 213462 0 1904 9 11 3 4 438 0 213465 family Syntrophobacteraceae 1 2 6 434 0 29526 genus 1 Syntrophobacter 428 1 0 119484 Syntrophobacter fumaroxidans species family Syntrophaceae 1 213468 0 7 18 1457 60892 1 Desulfobacca genus 427 1 2 0 1 426 0 60893 species Desulfobacca acetoxidans 43773 genus Syntrophus 1 2 1 583 0 Syntrophus aciditrophicus species 316277 0 582 1 2357 genus 1 Desulfomonile 11 2 429 0 species Desulfomonile tiedjei 2358 0 1 418 9 4 1210 0 453227 order Desulfarculales 1 0 1201 3 57 1 Desulfarculaceae family 453228 453229 1 Desulfarculus genus 1144 2 4 0 species Desulfarculus baarsii 453230 0 1 1140 213113 order Desulfurellales 1 6 2 753 0 117942 Desulfurellaceae 1 family 751 1 5 0 genus Desulfurella 1 33001 0 2 2 488 33002 species Desulfurella acetivorans 1 486 0 0 1 2 262 genus Hippea 1 84404 1 261 0 84405 species Hippea maritima 1 Desulfobacterales order 213118 0 7287 46 19 1 Desulfobacteraceae family 213119 0 3883 9 10 1 634 0 2295 genus 634 1 0 2296 Desulfobacterium autotrophicum species 0 2 1 751 genus Desulfatibacillum 1 218207 750 1 0 259354 Desulfatibacillum alkenivorans species 0 1 2 614 genus Desulfobacula 1 28222 28223 species Desulfobacula toluolica 1 613 0 9 3 1874 0 896 genus 1 Desulfococcus species Desulfococcus oleovorans 181663 0 1 1086 species Desulfococcus multivorans 897 0 1 779 Desulfobulbaceae 1 family 213121 0 3358 16 9 genus 1 Desulfobulbus 893 0 2 17 1056 1039 1 0 1986146 Desulfobulbus sp. ORNL species 0 1 2 886 genus 1 Desulfurivibrio 427922 0 1 885 species Desulfurivibrio alkaliphilus 427923 53318 genus 1 Desulfocapsa 1 2 719 0 0 718 1 Desulfocapsa sulfexigens species 65555 1 Desulfotalea genus 109168 0 681 2 2 679 1 0 84980 Desulfotalea psychrophila species 0 35126 24 69 1 Epsilonproteobacteria class 29547 5 1 613 0 235899 order Nautiliales 1 0 1 3 402 family Nautiliaceae 1 224467 1 Nautilia genus 191291 0 401 16 2 1 385 0 244787 species Nautilia profundicola 2795691 family 1 210 0 0 1 210 genus 269258 0 210 1 no rank 2624044 210 1 0 387092 Nitratiruptor sp. SB155-2 species 213849 1 Campylobacterales order 34489 63 428 0 family 2771472 0 4 1921 genus 269260 0 637 1 Nitratifractor salsuginis species 269261 0 637 1 0 1284 3 3 1 Sulfurovum genus 265570 no rank 2646778 0 1 632 387093 Sulfurovum sp. NBC37-1 species 632 1 0 1 649 0 206403 species Sulfurovum lithotrophicum family Campylobacteraceae 1 72294 0 41 1231 28353 2207 9 9 0 57665 Sulfurospirillum 1 genus 194424 species Sulfurospirillum halorespirans 1 213 0 Sulfurospirillum cavolei species 366522 0 185 1 Sulfurospirillum barnesii species 44674 0 271 1 no rank 2618290 0 3 834 Sulfurospirillum sp. SL2-1 species 1986224 0 292 1 1581011 species Sulfurospirillum sp. UCH001 1 209 0 1 333 0 220622 species Sulfurospirillum sp. JPD-1 Sulfurospirillum deleyianum species 65553 0 317 1 0 378 1 Sulfurospirillum multivorans species 66821 genus 1 Campylobacter 194 0 26 335 22753 0 4 697 no rank 2593542 1 125 0 1660073 species Campylobacter sp. RM6137 0 1 230 species Campylobacter sp. RM16704 1500960 1660076 Campylobacter sp. RM12175 species 130 1 0 212 1 0 1660074 Campylobacter sp. RM8964 species 76517 species Campylobacter hominis 1 185 0 199 Campylobacter concisus species 378 1 0 Campylobacter helveticus species 28898 0 238 1 0 372 1 Campylobacter sputorum species 206 Campylobacter gracilis species 824 0 456 1 Campylobacter cuniculorum species 374106 0 185 1 species Campylobacter peloridis 488546 0 1 230 0 313 1 Campylobacter curvus species 200 0 1 261 species Campylobacter volucris 1031542 1 4463 0 197 species Campylobacter jejuni 0 1 188 species Campylobacter avium 522485 311 1 0 497724 Campylobacter subantarcticus species 1 856 0 196 species Campylobacter fetus 0 1 299 species Campylobacter hyointestinalis 198 1 172 0 1244531 species Campylobacter iguaniorum 249 1 0 260714 Campylobacter insulaenigrae species 1 475 0 75658 species Campylobacter lanienae Campylobacter ureolyticus species 827 0 311 1 201 Campylobacter lari species 719 1 0 species Campylobacter coli 195 0 1 10724 1965231 Campylobacter pinnipediorum species 336 1 0 no rank 2321108 0 2162 5 2321187 genus 447 1 0 1850254 Arcobacter sp. LPB0137 species 447 1 0 0 1 544 no rank 2321207 1 544 0 944547 species Arcobacter sp. L 0 1171 3 8 1 Arcobacter genus 28196 28199 Arcobacter nitrofigilis species 575 1 0 1 588 0 28197 species Arcobacter butzleri 3019 6 14 0 72293 1 Helicobacteraceae family 1 247 0 843 genus 247 1 0 844 Wolinella succinogenes species 209 genus 1 Helicobacter 13 12 2766 0 153 1 0 217 Helicobacter mustelae species 85 1 0 76936 Helicobacter typhlonius species 0 1 153 species Helicobacter himalayensis 1591088 1 168 0 138563 species Helicobacter cetorum 0 1 130 species Helicobacter bilis 37372 93 1 0 212 Helicobacter acinonychis species Helicobacter felis species 214 0 108 1 32025 Helicobacter hepaticus species 173 1 0 species Helicobacter cinaedi 213 0 1 73 Helicobacter pylori species 210 0 1458 1 2593540 no rank 159 1 0 222136 species Helicobacter sp. MIT 01-6242 1 159 0 3 768 0 2771471 family genus 202746 0 567 2 0 282 1 Sulfurimonas autotrophica species 202747 Sulfurimonas denitrificans species 39766 0 285 1 0 201 1 genus 286130 201 1 0 148813 Sulfuricurvum kujiense species class 580370 0 1022 5 5 17 1022 0 580371 order 1 Mariprofundales 580372 family Mariprofundaceae 1 4 3 1005 0 0 3 36 1002 genus Mariprofundus 1 377315 1921087 species Mariprofundus ferrinatatus 1 417 0 1921086 species Mariprofundus aestuarium 1 549 0 8 4 2313 0 1553900 class 1 Oligoflexia 0 575 2 order 2024979 261 1 0 263369 family 0 1 261 genus 146784 0 1 261 species Bacteriovorax stolpii 960 1 314 0 1652132 family 0 314 1 genus 1652133 0 1 314 species Halobacteriovorax marinus 97084 1734 8 5 0 213481 Bdellovibrionales 1 order 213483 family Bdellovibrionaceae 1 9 4 1726 0 0 1717 5 3 1 Bdellovibrio genus 958 0 155 1 Bdellovibrio exovorus species 453816 959 Bdellovibrio bacteriovorus species 1557 1 0 1 Acidithiobacillia class 1807140 0 1738 6 7 0 32 6 1732 order Acidithiobacillales 1 225057 1700 3 5 0 225058 1 Acidithiobacillaceae family 1697 14 4 0 119977 1 Acidithiobacillus genus 532 1 0 920 Acidithiobacillus ferrooxidans species species Acidithiobacillus caldus 33059 0 1 485 160808 species Acidithiobacillus ferrivorans 1 666 0 1 Alphaproteobacteria class 28211 0 237382 803 551 4807 51 10 0 766 1 Rickettsiales order 2739 27 1 0 775 1 Rickettsiaceae family 0 25 2623 tribe 33988 0 23 290 2186 genus Rickettsia 1 780 0 1203 17 species group 114277 33989 species Rickettsia amblyommatis 1 65 0 Rickettsia australis species 787 0 218 1 33991 Rickettsia montanensis species 35 1 0 0 1 7 species Rickettsia conorii 781 23 1 0 35790 Rickettsia japonica species 0 31 1 Rickettsia rickettsii species 783 0 1 10 species Rickettsia africae 35788 0 68 1 Rickettsia rhipicephali species 33992 species Rickettsia parkeri 35792 0 1 15 Rickettsia philipii species 1105106 0 21 1 0 1 49 species Rickettsia peacockii 47589 0 1 90 species Rickettsia monacensis 109232 0 216 1 Rickettsia akari species 786 0 27 1 Rickettsia heilongjiangensis species 226665 species Rickettsia massiliae 35791 0 1 58 11 1 0 35794 Rickettsia slovaca species 0 1 259 species Rickettsia felis 42862 114295 no rank 1 158 0 158 1 0 337479 Rickettsia endosymbiont of Bemisia tabaci species species group 1129742 0 291 2 species Rickettsia bellii 33990 0 1 169 species Rickettsia canadensis 788 0 1 122 0 244 2 species group 114292 785 Rickettsia typhi species 132 1 0 0 112 1 Rickettsia prowazekii species 782 0 437 1 2 1 Orientia genus 69474 species Orientia tsutsugamushi 784 0 1 436 genus 2115980 0 1 115 species Candidatus Phycorickettsia trachydisci 2115978 0 1 115 1773 21 0 942 family 0 737 2 6 1 Ehrlichia genus 943 0 1 94 no rank 106181 94 1 0 391036 Ehrlichia sp. HF species 4 641 0 106178 species group 104 1 0 35795 Ehrlichia muris species 0 1 201 species Ehrlichia canis 944 Ehrlichia ruminantium species 779 0 172 1 945 species Ehrlichia chaffeensis 1 164 0 952 tribe 8 653 0 0 9 8 653 genus 1 Wolbachia 953 2640676 no rank 7 644 0 75 1 0 66084 Wolbachia sp. wRi species 163164 species Wolbachia endosymbiont of Drosophila melanogaster 1 34 0 77038 Wolbachia endosymbiont of Drosophila simulans species 306 1 0 1 128 0 80849 species Wolbachia endosymbiont of Brugia malayi 1 27 0 77551 species Wolbachia endosymbiont of Onchocerca volvulus 58 1 0 246273 Wolbachia endosymbiont of Cimex lectularius species species Wolbachia endosymbiont of Onchocerca ochengi 100901 0 1 16 0 3 252 genus 768 Anaplasma centrale species 769 0 90 1 770 Anaplasma marginale species 112 1 0 species group 106179 0 50 1 948 Anaplasma phagocytophilum species 50 1 0 0 131 4 5 1 Neorickettsia genus 33993 Neorickettsia helminthoeca species 33994 0 33 1 0 38 1 Neorickettsia risticii species 950 951 Neorickettsia sennetsu species 55 1 0 180 1 0 1699067 no rank 1528098 Rickettsiales bacterium Ac37b species 180 1 0 1328881 family 1 105 0 105 1 0 411566 genus 1 105 0 234827 species Candidatus Midichloria mitochondrii 1191478 Magnetococcales 1 order 527 4 15 0 0 3 1 512 family 1 Magnetococcaceae 1191479 Magnetococcus 1 genus 162171 0 511 2 15 0 496 1 Magnetococcus marinus species 1124597 0 8 2595 no rank 82117 991903 Polymorphum 1 genus 523 2 7 0 Polymorphum gilvum species 991904 0 516 1 62654 clade 416 2 0 767891 Candidatus Puniceispirillum 1 genus 416 2 1 0 1 415 0 767892 species Candidatus Puniceispirillum marinum genus 1 Phreatobacter 1632780 0 13 2 973 Phreatobacter sp. S-12 species 1868589 0 960 1 0 683 11 2 Micavibrio 1 genus 213485 Micavibrio aeruginosavorus species 349221 0 672 1 0 10395 20 97 Caulobacterales 1 order 204458 19 178 10298 0 76892 family 1 Caulobacteraceae 1 Phenylobacterium genus 20 0 871 2 3 species Phenylobacterium zucineum 284016 0 1 868 no rank 81440 0 354 1 354 1 0 1759059 Caulobacteraceae bacterium OTSz_A_272 species 0 4818 6 80 1 Caulobacter genus 75 0 1209 1 no rank 2648921 Caulobacter sp. K31 species 366602 0 1209 1 155892 Caulobacter vibrioides species 1350 1 0 739 1 0 88688 Caulobacter segnis species 776 1 0 69395 Caulobacter henricii species 69666 Caulobacter mirabilis species 664 1 0 1 Brevundimonas genus 41275 0 3504 7 88 1 583 0 588932 species Brevundimonas naejangsanensis 0 1 530 species Brevundimonas vesicularis 41276 no rank 2622653 0 1738 3 595 1 0 1938605 Brevundimonas sp. LM2 species species Brevundimonas sp. DS20 1532555 0 1 599 0 544 1 Brevundimonas sp. GW460-12-10-14-LB2 species 1827469 565 1 0 74313 Brevundimonas subvibrioides species genus Asticcacaulis 1 76890 0 2 6 573 567 1 0 78587 Asticcacaulis excentricus species order 255473 0 2 282 255474 1 Parvularculaceae family 282 4 2 0 genus 208215 0 1 278 278 1 0 208216 Parvularcula bermudensis species 104532 1098 209 0 356 Rhizobiales 1 order 1 Rhodobiaceae family 119043 0 578 6 3 572 23 2 0 256616 Parvibaculum 1 genus 256618 Parvibaculum lavamentivorans species 549 1 0 19475 181 26 0 41294 1 Bradyrhizobiaceae family 3355 38 5 0 85413 1 Bosea genus 982 1 0 1526658 Bosea vaviloviae species 2653178 no rank 3 2335 0 1 640 0 2015316 species Bosea sp. AS-1 0 1 800 species Bosea sp. PAMC 26642 1792307 1842539 species Bosea sp. RAC05 1 895 0 genus 1 Oligotropha 40136 0 2 7 495 species Oligotropha carboxidovorans 40137 0 1 488 471 5 2 0 1649510 1 Variibacter genus 0 466 1 Variibacter gotjawalensis species 1333996 0 11 245 9726 genus 1 Bradyrhizobium 374 0 904 1 Bradyrhizobium oligotrophicum species 44255 2631580 no rank 5065 6 0 Bradyrhizobium sp. ORS 285 species 115808 0 711 1 species Bradyrhizobium sp. ORS 278 114615 0 1 945 Bradyrhizobium sp. BTAi1 species 288000 0 768 1 1223566 species Bradyrhizobium sp. CCGE-LA001 1 858 0 0 1 868 species Bradyrhizobium sp. 376 0 915 1 Bradyrhizobium sp. SK17 species 2057741 1406 1 0 1355477 Bradyrhizobium diazoefficiens species 1 719 0 1274631 species Bradyrhizobium icense 375 species Bradyrhizobium japonicum 1 1387 0 1 Nitrobacter genus 911 0 672 3 1 1 356 0 912 species Nitrobacter hamburgensis 1 315 0 913 species Nitrobacter winogradskyi 0 4575 40 2 Rhodopseudomonas 1 genus 1073 0 4535 1 Rhodopseudomonas palustris species 1076 82115 family Rhizobiaceae 1 366 52 35543 0 0 465 5 genus 34019 34020 Candidatus Liberibacter africanus species 71 1 0 species Candidatus Liberibacter asiaticus 34021 0 1 58 Candidatus Liberibacter americanus species 309868 0 128 1 1 80 0 556287 species Candidatus Liberibacter solanacearum 1 128 0 1273132 species Liberibacter crescens 10 7788 0 227292 no rank 0 140 7 6344 genus 1 Sinorhizobium 28105 0 853 1 Sinorhizobium americanum species 194963 species Sinorhizobium medicae 110321 0 1 630 382 Sinorhizobium meliloti species 1634 1 0 0 1 1709 species group 663276 380 Sinorhizobium fredii species 1709 1 0 no rank 2613772 0 1378 2 Sinorhizobium sp. CCBAU 05631 species 794846 0 581 1 797 1 0 1842534 Sinorhizobium sp. RAC02 species 0 5 3 1444 genus 1 Ensifer 106591 Ensifer adhaerens species 106592 0 771 1 0 1 668 species Ensifer sojae 716925 Shinella 1 genus 323620 0 1156 2 11 2643062 no rank 1145 1 0 species Shinella sp. HZN7 879274 0 1 1145 0 34 25768 no rank 227290 1126 17 2 0 1525371 Neorhizobium 1 genus 0 1109 1 Neorhizobium galegae species 399 genus 1 Rhizobium 379 0 1124 25 18237 species Rhizobium etli 29449 0 1 2217 0 7584 19 no rank 2613769 0 707 1 Rhizobium sp. 10195 species 2028343 2020313 species Rhizobium sp. TAL182 1 138 0 1703961 Rhizobium sp. N1314 species 123 1 0 1 123 0 1703966 species Rhizobium sp. N731 Rhizobium sp. IE4771 species 1301032 0 414 1 2020312 species Rhizobium sp. CIAT894 1 497 0 0 1 1 Rhizobium sp. N1341 species 1703962 0 1 520 species Rhizobium sp. NXC24 2048897 424182 Rhizobium sp. IRBG74 species 744 1 0 1571470 Rhizobium sp. ACO-34A species 948 1 0 593 1 0 1869170 Rhizobium sp. S41 species 0 1 477 species Rhizobium sp. Kim5 2020311 5 1 0 1703965 Rhizobium sp. N6212 species 1125847 Rhizobium sp. NT-26 species 531 1 0 1 587 0 1914541 species Rhizobium sp. Y9 0 1 5 species Rhizobium sp. N621 1703964 species Rhizobium sp. N324 1703969 0 1 705 0 465 1 Rhizobium sp. NXC14 species 1981173 1703967 Rhizobium sp. N741 species 1 1 0 1117 1 0 56730 Rhizobium gallicum species 1 1430 0 396 species Rhizobium phaseoli 1 3997 0 384 species Rhizobium leguminosarum 398 Rhizobium tropici species 768 1 0 genus Agrobacterium 1 357 0 166 7 6405 1 654 0 373 species Agrobacterium vitis 2 1109 0 2632611 no rank 1842536 species Agrobacterium sp. RAC06 1 542 0 861208 species Agrobacterium sp. H13-3 1 567 0 0 2 3680 species group 1183400 1 2993 0 358 species Agrobacterium tumefaciens species Agrobacterium fabrum 1176649 0 1 687 359 species Agrobacterium rhizogenes 1 796 0 20 77 10214 0 69277 family 1 Phyllobacteriaceae Mesorhizobium 1 genus 68287 0 6823 148 9 Mesorhizobium opportunistum species 593909 0 1017 1 738 1 0 71433 Mesorhizobium amorphae species 39645 species Mesorhizobium ciceri 1 1121 0 no rank 325217 0 1 733 278153 species Mesorhizobium sp. WSM1497 1 733 0 Mesorhizobium japonicum species 2066070 0 740 1 1 987 0 381 species Mesorhizobium loti 0 605 1 Mesorhizobium australicum species 536018 1 734 0 1670800 species Mesorhizobium sp. B7 274591 Hoeflea 1 genus 718 13 2 0 0 1 705 no rank 2614931 1620421 species Hoeflea sp. IMCC20628 1 705 0 449972 Chelativorans 1 genus 542 2 1 0 0 1 541 no rank 2643807 1 541 0 266779 species Chelativorans sp. BNC1 1 Phyllobacterium genus 28100 0 472 8 2 1 464 0 1867719 species Phyllobacterium zundukense 245876 genus 1 Nitratireductor 9 2 657 0 648 1 0 472175 Nitratireductor basaltis species genus Aminobacter 1 31988 0 7 2 925 0 1 918 species Aminobacter aminovorans 83263 0 18 20 4512 family Brucellaceae 1 118882 528 genus 1 Ochrobactrum 5 12 2388 0 0 1 529 species Ochrobactrum pseudogrignonense 419475 1 539 0 571256 species Ochrobactrum pituitosum species Ochrobactrum sp. A44 271865 0 1 620 529 species Ochrobactrum anthropi 1 688 0 0 14 746 2106 genus Brucella 1 234 981386 Brucella vulpis species 170 1 0 Brucella abortus species 235 0 73 1 Brucella suis species 29461 0 81 1 0 1 113 species Brucella canis 36855 0 1 40 species Brucella melitensis 29459 0 525 4 no rank 2632610 1149952 species Brucella sp. 09RB8471 1 154 0 163 1 0 1885919 Brucella sp. 141012304 species 1891098 species Brucella sp. 2002734562 1 42 0 0 1 166 species Brucella sp. 09RB8910 1844051 0 73 1 Brucella microti species 444163 120577 Brucella ceti species 131 1 0 43 1 0 236 Brucella ovis species species Brucella pinnipedialis 120576 0 1 111 31993 Methylocystaceae 1 family 1406 6 12 0 425 Methylosinus 1 genus 564 8 2 0 0 1 556 species Methylosinus trichosporium 426 0 830 3 11 Methylocystis 1 genus 133 1 394 0 655015 species Methylocystis bryophila no rank 2625913 0 425 1 187303 species Methylocystis sp. SC2 1 425 0 2036 6 0 119042 no rank 890 2 19 0 1572860 1 Hartmannibacter genus 871 1 0 1482074 Hartmannibacter diazotrophicus species 1484898 1 Methyloceanibacter genus 503 2 6 0 1384459 Methyloceanibacter caenitepidi species 497 1 0 643 33 2 0 1734920 1 Pseudorhodoplanes genus 610 1 0 1235591 Pseudorhodoplanes sinuspersici species 255475 Aurantimonadaceae 1 family 3228 7 16 0 414371 genus Aureimonas 1 16 2 673 0 no rank 2615206 0 1 657 1349819 Aureimonas sp. AU20 species 657 1 0 0 2539 4 72 Martelella 1 genus 293088 species Martelella mediterranea 293089 0 1 835 0 755 1 Martelella endophytica species 1486262 no rank 2629616 0 877 1 0 1 877 species Martelella sp. AD-3 686597 772 1 Bartonellaceae family 3219 18 20 0 3199 17 37 0 773 1 Bartonella genus 0 132 1 Bartonella ancashensis species 1318743 115 1 0 56426 Bartonella clarridgeiae species 220 1 0 85701 Bartonella tribocorum species 568 1 0 1686310 Bartonella apis species 38323 Bartonella henselae species 121 1 0 33045 species Bartonella grahamii 1 493 0 157 1 0 774 Bartonella bacilliformis species 0 1 202 species Bartonella vinsonii 33047 species Bartonella australis 388640 0 1 60 Bartonella quintana species 803 0 206 1 6 888 0 2645622 no rank 1 94 0 1933912 species Bartonella sp. Raccoon60 species Bartonella sp. WD16.2 1933904 0 1 182 1933906 Bartonella sp. JB15 species 189 1 0 species Bartonella sp. 1-1C 515256 0 1 151 species Bartonella sp. A1379B 1933910 0 1 83 Bartonella sp. JB63 species 1933907 0 189 1 335928 1 Xanthobacteraceae family 2907 33 7 0 6 Azorhizobium 1 genus 1193 2 18 0 0 1175 1 Azorhizobium caulinodans species 7 22 2 927 0 279 genus 1 Xanthobacter 0 1 905 species Xanthobacter autotrophicus 280 754 10 2 0 152053 1 Starkeya genus species Starkeya novella 921 0 1 744 10961 15 35 0 119045 1 Methylobacteriaceae family 0 9 274 6185 genus 1 Methylobacterium 407 0 771 1 Methylobacterium phyllosphaerae species 418223 334852 species Methylobacterium oryzae 1 741 0 Methylobacterium nodulans species 114616 0 664 1 0 1 832 species Methylobacterium radiotolerans 31998 0 798 1 Methylobacterium aquaticum species 270351 3 2105 0 2615210 no rank 0 1 671 species Methylobacterium sp. 4-46 426117 1 809 0 1479019 species Methylobacterium sp. C1 Methylobacterium sp. AMS5 species 925818 0 625 1 0 924 2 14 Microvirga 1 genus 186650 1 910 0 1882682 species Microvirga ossetica 3 3817 0 2282523 genus 0 1 2139 species Methylobacterium extorquens 408 Methylobacterium populi species 223967 0 1186 1 29429 species Methylobacterium zatmanii 1 492 0 822 5 4 0 45404 1 Beijerinckiaceae family 1 Methylocella genus 120652 0 411 2 3 Methylocella silvestris species 199596 0 408 1 genus 1 Beijerinckia 532 0 2 3 407 1 404 0 533 species Beijerinckia indica 46 19 7009 0 45401 family 1 Hyphomicrobiaceae 1082930 genus 1 Pelagibacterium 2 2 438 0 531813 species Pelagibacterium halotolerans 1 436 0 genus Devosia 1 46913 0 4 66 2195 196773 no rank 2129 3 0 1 855 0 1736675 species Devosia sp. A16 0 436 1 Devosia sp. I507 species 2083786 0 838 1 Devosia sp. H5989 species 1643450 29407 genus Rhodoplanes 1 22 2 827 0 2619116 no rank 1 805 0 674703 Rhodoplanes sp. Z2-YC6860 species 805 1 0 1068 genus 1 Rhodomicrobium 2 7 442 0 species Rhodomicrobium vannielii 1069 0 1 435 Hyphomicrobium 1 genus 81 0 1948 20 4 53399 Hyphomicrobium denitrificans species 558 1 0 1 546 0 2619925 no rank species Hyphomicrobium sp. MC1 717785 0 1 546 0 1 824 species Hyphomicrobium nitrativorans 1427356 0 2 2 464 genus 1 Filomicrobium 119044 1 462 0 1608628 species Candidatus Filomicrobium marinum 59282 genus 1 Blastochloris 26 2 649 0 0 1 623 species Blastochloris viridis 1079 2036754 1 Chelatococcaceae family 1524 16 4 0 0 3 61 1508 genus 1 Chelatococcus 28209 0 1 852 no rank 2638111 1 852 0 1702325 species Chelatococcus sp. CO-6 1 595 0 444444 species Chelatococcus daeguensis 54526 Pelagibacterales 1 order 946 1 7 0 1 134 0 2045213 genus 1925548 Candidatus Fonsibacter ubiquis species 134 1 0 0 5 811 family 1655514 0 2 452 no rank 1655516 0 298 1 alpha proteobacterium HIMB5 species 859653 0 1 154 species alpha proteobacterium HIMB59 744985 3 1 359 0 198251 genus 1 Candidatus Pelagibacter 198252 Candidatus Pelagibacter ubique species 192 1 0 0 166 1 no rank 2647897 1002672 species Candidatus Pelagibacter sp. IMCC9063 1 166 0 order 2800059 0 414 2 0 2 414 family 2800061 genus 1 Maricaulis 74317 0 2 7 414 74318 Maricaulis maris species 407 1 0 2800060 order 5 1119 0 Hyphomonadaceae 1 family 69657 0 1119 13 5 5 3 716 0 85 genus Hyphomonas 1 0 1 343 no rank 2630699 0 343 1 Hyphomonas sp. Mor2 species 1906738 Hyphomonas neptunium species 81032 0 368 1 genus 2723 0 1 390 species Hirschia baltica 2724 0 1 390 Rhodobacterales 1 order 204455 0 40280 318 89 31989 family 1 Rhodobacteraceae 674 88 39962 0 0 1 2 587 genus Antarctobacter 1 74032 586 1 0 74033 Antarctobacter heliothermus species genus 1 Sagittula 58842 0 1 2 878 no rank 2624628 0 877 1 2009329 species Sagittula sp. P11 1 877 0 0 2 2 777 genus 1 Defluviimonas 1097466 0 1 775 species Defluviimonas alba 1335048 0 418 1 genus 299261 Tateyamaria omphalii species 299262 0 418 1 0 1 6 genus Thalassococcus 436357 genus 1649279 0 1 613 Ruegeria mobilis species 379347 0 613 1 0 2 2 512 genus Roseovarius 1 74030 1 510 0 215743 species Roseovarius mucosus 1 Labrenzia genus 478070 0 2360 4 48 918 1 0 187304 Labrenzia aggregata species no rank 2648686 0 2 1394 2021862 Labrenzia sp. VG12 species 608 1 0 786 1 0 1674922 Labrenzia sp. CP4 species 0 683 1 genus 191028 Leisingera methylohalidivorans species 133924 0 683 1 0 411 1 genus 188905 no rank 2645469 0 411 1 0 1 411 species Jannaschia sp. CCS1 290400 2433 genus Roseobacter 1 2 3 846 0 1 430 0 42443 species Roseobacter litoralis 2434 Roseobacter denitrificans species 414 1 0 3 4 886 0 53945 genus Octadecabacter 1 1458307 Octadecabacter temperatus species 272 1 0 0 1 303 species Octadecabacter arcticus 53946 1 308 0 1217908 species Octadecabacter antarcticus 0 520 2 5 1 Thioclava genus 285107 species Thioclava nitratireducens 1915078 0 1 515 1 Celeribacter genus 875170 0 1873 5 7 species Celeribacter indicus 1208324 0 1 584 0 223 1 Celeribacter marinus species 1397108 0 1 428 species Celeribacter ethanolicus 1758178 Celeribacter manganoxidans species 1411902 0 631 1 0 65 9 6032 genus 1 Paracoccus 265 1077935 Paracoccus zhejiangensis species 784 1 0 1045 1 0 147645 Paracoccus yeei species 34003 Paracoccus aminophilus species 549 1 0 species Paracoccus sp. CBA4604 2065379 0 1 724 0 602 1 no rank 246570 species Paracoccus sp. BM15 1529068 0 1 602 species Paracoccus aminovorans 34004 0 1 674 1945662 species Paracoccus contaminans 1 646 0 0 1 943 species Paracoccus denitrificans 266 no rank 58840 0 2 874 0 1 349 species Rhodobacteraceae bacterium 1904441 0 1 525 species Rhodobacteraceae bacterium QY30 2033435 Halocynthiibacter 1 genus 1579315 0 157 2 2 Halocynthiibacter arcticus species 1579316 0 155 1 genus Pelagibaca 1 360528 0 4 2 977 Pelagibaca abyssi species 1250539 0 973 1 13 1 0 245186 Loktanella genus 16 4 1897 0 34008 genus 1 Rhodovulum 2631432 no rank 1042 2 0 0 615 1 Rhodovulum sp. P5 species 1564506 427 1 0 308754 Rhodovulum sp. MB263 species 839 1 0 35806 Rhodovulum sulfidophilum species 1 245 0 1284657 genus 1 245 0 1284658 species Planktomarina temperata 1609958 Confluentimicrobium 1 genus 593 6 2 0 1 587 0 2643318 no rank 0 1 587 species Confluentimicrobium sp. EMB200-NS6 1609966 309512 genus Dinoroseobacter 1 3 2 611 0 0 608 1 Dinoroseobacter shibae species 215813 227873 genus 1 Pannonibacter 2 7 1055 0 Pannonibacter phragmitetus species 121719 0 1048 1 genus 1 Ruegeria 97050 0 3 30 1378 89184 species Ruegeria pomeroyi 1 809 0 2625375 no rank 539 1 0 species Ruegeria sp. TM1040 292414 0 1 539 29 2 810 0 367771 genus Marinovum 1 Marinovum algicola species 42444 0 781 1 0 3 2 311 genus 1 Marivivens 1759396 2622455 no rank 308 1 0 0 308 1 Marivivens sp. JLT3646 species 1920883 92944 Ketogulonicigenium 1 genus 893 11 3 0 Ketogulonicigenium vulgare species 92945 0 436 1 species Ketogulonicigenium robustum 92947 0 1 446 359 2 1 0 159345 Roseibacterium 1 genus Roseibacterium elongatum species 159346 0 358 1 1816 2 0 263377 genus 920 1 0 1229727 Thiobacimonas profunda species 896 1 0 2640570 no rank Yangia sp. CCB-MM3 species 1792508 0 896 1 0 573 1 genus 2211641 245188 species Loktanella vestfoldensis 1 573 0 302485 genus 1 Phaeobacter 5 56 4248 0 Phaeobacter inhibens species 221822 0 1548 1 1115 1 0 60890 Phaeobacter gallaeciensis species Phaeobacter porticola species 1844006 0 409 1 1 1120 0 1580596 species Phaeobacter piscinae 0 3544 32 5 Rhodobacter 1 genus 1060 1063 species Rhodobacter sphaeroides 1 1574 0 species Rhodobacter capsulatus 1061 0 1 815 no rank 196779 0 1123 2 1850250 Rhodobacter sp. LPB0142 species 482 1 0 641 1 0 2033869 Rhodobacter sp. CZR27 species 60136 1 Sulfitobacter genus 1162 3 7 0 species Sulfitobacter pseudonitzschiae 1402135 0 1 524 0 1 631 no rank 196795 Sulfitobacter sp. AM1-D1 species 1917485 0 631 1 119541 genus 1 370 0 0 1 370 species Rhodobaca barguzinensis 441209 0 682 4 5 Holosporales 1 order 1921002 1 127 0 1777752 family 0 1 127 genus 1521255 91604 species Candidatus Paracaedibacter acanthamoebae 1 127 0 44746 family 1 329 0 0 1 329 no rank 204454 329 1 0 86106 endosymbiont of Acanthamoeba sp. UWC8 species 0 5 2 222 family 1 Caedimonadaceae 2100208 1 217 0 1509243 genus 1509244 Candidatus Nucleicultrix amoebiphila species 217 1 0 204441 Rhodospirillales 1 order 33446 321 66 0 0 34 211 14508 family 1 Acetobacteraceae 433 genus Komagataeibacter 1 1434011 0 5 72 2372 species Komagataeibacter medellinensis 1177712 0 1 407 species Komagataeibacter europaeus 33995 0 1 375 1 1030 0 28448 species Komagataeibacter xylinus 265960 Komagataeibacter nataicola species 488 1 0 genus 1 Kozakia 153497 0 2 5 432 1 427 0 153496 species Kozakia baliensis 1076 13 2 0 364409 Granulibacter 1 genus 364410 Granulibacter bethesdensis species 1063 1 0 0 3 41 2131 genus Roseomonas 1 125216 0 1 1001 no rank 2617492 Roseomonas sp. FDAARGOS_362 species 2018065 0 1001 1 species Roseomonas gilardii 257708 0 1 1089 0 1020 3 60 Acidiphilium 1 genus 522 0 1 480 species Acidiphilium cryptum 524 0 480 1 Acidiphilium multivorum species 62140 0 1 266 genus 1602345 1 266 0 1510841 species Parasaccharibacter apium 91914 Asaia 1 genus 403 2 2 0 0 401 1 Asaia bogorensis species 91915 320496 Neoasaia 1 genus 350 3 2 0 347 1 0 320497 Neoasaia chiangmaiensis species 441 1 Gluconobacter genus 1522 3 4 0 0 373 1 Gluconobacter albidus species 318683 442 species Gluconobacter oxydans 1 1145 0 0 37 8 3991 genus 1 Acetobacter 434 1076596 species Acetobacter persici 1 438 0 0 331 1 Acetobacter pomorum species 65959 0 1 507 species Acetobacter senegalensis 446692 151157 subgenus 391 1 0 435 Acetobacter aceti species 391 1 0 1 513 0 104102 species Acetobacter tropicalis 299 1 0 1633874 Acetobacter oryzifermentans species 0 1 1475 species Acetobacter pasteurianus 438 0 734 14 2 Gluconacetobacter 1 genus 89583 species Gluconacetobacter diazotrophicus 33996 0 1 720 0 18617 276 31 Rhodospirillaceae 1 family 41295 0 2 2 227 genus Haematospirillum 1 1804663 1549855 Haematospirillum jordaniae species 225 1 0 1612157 Pararhodospirillum 1 genus 531 2 6 0 1084 Pararhodospirillum photometricum species 525 1 0 0 1051 2 9 1 Niveispirillum genus 1543704 1042 1 0 1612173 Niveispirillum cyanobacteriorum species 0 1444 3 2 Nitrospirillum 1 genus 1543705 0 1441 1 Nitrospirillum amazonense species 28077 0 984 9 2 Tistrella 1 genus 171436 171437 Tistrella mobilis species 975 1 0 0 1340 3 9 Thalassospira 1 genus 168934 1 528 0 220697 species Thalassospira xiamenensis Thalassospira sp. CSC3H3 species 2048283 0 803 1 0 103 5 6648 genus 1 Azospirillum 191 2254 1 0 192 Azospirillum brasilense species 0 1 2279 species Azospirillum lipoferum 193 1226968 Azospirillum humicireducens species 594 1 0 1 1418 0 528244 species Azospirillum thiophilum 169 2 2 0 1263978 1 Candidatus Endolissoclinum genus 1263979 Candidatus Endolissoclinum faulkneri species 167 1 0 genus 1 Magnetospirillum 13134 0 95 5 3929 species Magnetospirillum gryphiswaldense 55518 0 1 1182 no rank 2617991 0 2 1754 1639348 Magnetospirillum sp. ME-1 species 869 1 0 0 885 1 Magnetospirillum sp. XM-1 species 1663591 0 898 1 Magnetospirillum magneticum species 84159 1081 genus Rhodospirillum 1 3 14 1472 0 0 611 1 Rhodospirillum rubrum species 1085 species Rhodospirillum centenum 34018 0 1 847 0 546 2 3 1 Magnetospira genus 1182780 0 543 1 no rank 2685734 species Magnetospira sp. QH-2 1288970 0 1 543 272 82 36554 0 204457 order Sphingomonadales 1 1 Sphingomonadaceae family 41297 0 27739 59 315 0 1 526 genus 2685927 Sphingomonas sp. JJ-A5 species 1921510 0 526 1 533 2 7 0 72173 1 Citromicrobium genus 2630544 no rank 1 526 0 1 526 0 1634516 species Citromicrobium sp. JL477 genus 1 Sphingorhabdus 1434046 0 31 3 669 2 638 0 2614947 no rank species Sphingorhabdus sp. YGSMI21 2077182 0 1 362 1806885 species Sphingorhabdus sp. M41 1 276 0 0 623 25 2 Blastomonas 1 genus 150203 0 598 1 no rank 2626550 1 598 0 1842535 species Blastomonas sp. RAC04 15 144 7382 0 165695 genus Sphingobium 1 519 1 0 46429 Sphingobium chlorophenolicum species Sphingobium hydrophobicum species 1673076 0 613 1 0 380 1 Sphingobium japonicum species 332056 2611147 no rank 3311 6 0 1843368 species Sphingobium sp. RAC03 1 634 0 542 1 0 1855519 Sphingobium sp. EP60837 species Sphingobium sp. YBL2 species 484429 0 633 1 species Sphingobium sp. TKS 1315974 0 1 490 Sphingobium sp. SYK-6 species 627192 0 683 1 1 329 0 407020 species Sphingobium sp. MI1205 1332080 species Sphingobium baderi 1 444 0 13690 Sphingobium yanoikuyae species 700 1 0 1 514 0 120107 species Sphingobium cloacae species Sphingobium indicum 332055 0 1 464 293 1 0 76947 Sphingobium herbicidovorans species 165697 1 Sphingopyxis genus 4427 10 69 0 0 1 934 species Sphingopyxis macrogoltabida 33050 1 331 0 33052 species Sphingopyxis terrae 0 476 1 Sphingopyxis alaskensis species 117207 2614943 no rank 1679 4 0 1913578 Sphingopyxis sp. LPB0140 species 141 1 0 540 1 0 1866325 Sphingopyxis sp. MG species 292913 Sphingopyxis sp. 113P3 species 512 1 0 486 1 0 1357916 Sphingopyxis sp. QXT-31 species 1 396 0 1515612 species Sphingopyxis fribergensis 0 1 542 species Sphingopyxis granuli 267128 837 2 3 0 541 Zymomonas 1 genus 0 1 834 species Zymomonas mobilis 542 2709685 genus 1 325 0 0 325 1 Sphingorhabdus flavimaris species 266812 0 5 36 3033 genus Novosphingobium 1 165696 Novosphingobium resinovorum species 158500 0 745 1 0 1 769 no rank 2644732 1 769 0 702113 species Novosphingobium sp. PP1Y 0 777 1 Novosphingobium pentaromativorans species 205844 0 1 706 species Novosphingobium aromaticivorans 48935 0 13 2 571 genus Rhizorhabdus 1 1649486 1 558 0 1850238 species Rhizorhabdus dicambivorans 0 8498 15 132 1 Sphingomonas genus 13687 160791 Sphingomonas wittichii 1 species 1431 671 2 0 1283312 Sphingomonas sp. DC-6 strain 760 1 0 196159 no rank 3379 6 0 Sphingomonas sp. Cra20 species 1327635 0 572 1 745310 Sphingomonas sp. MM-1 species 611 1 0 1961362 species Sphingomonas sp. NIC1 1 538 0 1938607 Sphingomonas sp. LM7 species 506 1 0 1390395 species Sphingomonas sp. LK11 1 632 0 1030157 Sphingomonas sp. KC8 species 520 1 0 1 633 0 93064 species Sphingomonas koreensis 152682 Sphingomonas melonis species 603 1 0 555 1 0 1560345 Sphingomonas panacis species species Sphingomonas sanxanigenens 397260 0 1 690 0 508 1 Sphingomonas taxi species 1549858 Sphingomonas hengshuiensis species 1609977 0 567 1 family 1 Erythrobacteraceae 335929 0 22 162 8543 genus 1 Altererythrobacter 361177 0 4 37 1232 476157 Altererythrobacter ishigakiensis species 261 1 0 1 488 0 1267766 species Altererythrobacter atlanticus 446 1 0 361183 Altererythrobacter epoxidivorans species genus Croceicoccus 1 1295327 0 3 12 1343 1 579 0 1348774 species Croceicoccus naphthovorans 1 752 0 450378 species Croceicoccus marinus 2800788 no rank 6 2314 0 genus 1 Porphyrobacter 1111 0 83 3 1087 no rank 2683265 0 2 1004 1 565 0 2023229 species Porphyrobacter HT-58-2 1896196 species Porphyrobacter sp. LM 6 1 439 0 genus 1 Erythrobacter 1041 0 3 78 1227 1 443 0 1112 species Porphyrobacter neustonensis 0 706 1 Erythrobacter litoralis species 39960 789 2 0 2800686 genus 1982042 species Altererythrobacter mangrovi 1 390 0 1 399 0 692370 species Altererythrobacter dongtanensis 2 823 0 1855416 genus 0 403 1 Erythrobacter flavus species 192812 0 420 1 Erythrobacter seohaensis species 266951 0 1 523 genus 2800685 523 1 0 543877 Altererythrobacter marensis species genus 2800681 0 814 2 1 498 0 502682 species Erythrobacter gangjinensis species Erythrobacter atlanticus 1648404 0 1 316 543 1 0 2800682 genus 645517 species Altererythrobacter namhicola 1 543 0 432 344 214037 0 28216 class Betaproteobacteria 1 order Neisseriales 1 206351 0 169 35 18145 65 21 10131 0 481 family Neisseriaceae 1 genus 71 0 315 1 1 315 0 72 species Simonsiella muelleri 596 2 4 0 538 Eikenella 1 genus species Eikenella corrodens 539 0 1 592 482 genus Neisseria 1 206 12 7811 0 487 species Neisseria meningitidis 1 1877 0 510 1 0 485 Neisseria gonorrhoeae species 0 426 1 Neisseria weaveri species 28091 0 1 822 species Neisseria lactamica 486 0 552 1 Neisseria elongata species 495 0 377 1 Neisseria sicca species 490 638 1 0 326523 Neisseria zoodegmatis species 0 430 1 Neisseria mucosa species 488 1438 2 0 2623750 no rank 1853276 species Neisseria sp. 10022 1 639 0 0 1 799 species Neisseria sp. KEM232 655307 1853278 species Neisseria sp. 10023 1 535 0 genus 1193515 0 1 365 365 1 0 1196083 Snodgrassella alvi species 0 270 1 no rank 421605 1 270 0 2052837 species Neisseriaceae bacterium DSM 100970 59 Vitreoscilla 1 genus 709 3 14 0 281 1 0 2627922 no rank species Vitreoscilla sp. C1 96942 0 1 281 63 species Vitreoscilla filiformis 1 414 0 7845 13 106 0 1499392 1 Chromobacteriaceae family 168470 Laribacter 1 genus 1139 7 2 0 1 1132 0 168471 species Laribacter hongkongensis genus 1 Jeongeupia 885864 0 2 4 783 1 779 0 2619593 no rank 779 1 0 1906741 Jeongeupia sp. USM3 species 0 3587 4 no rank 90153 4 62 3587 0 535 genus 1 Chromobacterium 2641838 no rank 1047 1 0 2059672 species Chromobacterium sp. ATCC 53434 1 1047 0 0 1 1473 species Chromobacterium vaccinii 1108595 Chromobacterium violaceum species 536 0 1005 1 0 929 2 2 Aquaspirillum 1 genus 187 927 1 0 2620219 no rank 1 927 0 1938604 species Aquaspirillum sp. LM1 0 1301 2 25 Pseudogulbenkiania 1 genus 568394 0 1276 1 no rank 2642558 0 1 1276 species Pseudogulbenkiania sp. NH8B 748280 1 Rhodocyclales order 206389 0 11084 197 22 12 177 7442 0 2008794 family 1 Zoogloeaceae 12960 1 Azoarcus genus 2894 5 83 0 Azoarcus sp. SY39 species 2067960 0 618 1 0 2 1580 no rank 2629479 0 742 1 Azoarcus sp. CIB species 198107 838 1 0 748247 Azoarcus sp. KH32C species 1 613 0 418699 species Azoarcus olearius 33057 genus Thauera 1 103 6 4371 0 2 2030 0 2609274 no rank 0 996 1 Thauera sp. K11 species 2005884 1034 1 0 85643 Thauera sp. MZ1T species Thauera aromatica species 59405 0 645 1 0 1 761 species Thauera chlorobenzoica 96773 species Thauera humireducens 1134435 0 1 832 family Azonexaceae 1 2008795 0 10 3 807 73029 1 Dechloromonas genus 797 6 2 0 species Dechloromonas aromatica 259537 0 1 791 0 6 28 2638 family 1 Rhodocyclaceae 75787 2 27 1167 0 146937 genus 1 Azospira Azospira oryzae species 146939 0 1140 1 674 1 0 75788 no rank 0 674 1 Rhodocyclaceae bacterium species 1898103 genus 1 Aromatoleum 551759 0 2 21 769 1 748 0 551760 species Aromatoleum aromaticum order 1 Nitrosomonadales 32003 0 44 88 9542 2008790 1 Thiobacillaceae family 561 9 3 0 0 552 2 7 1 Thiobacillus genus 919 Thiobacillus denitrificans species 36861 0 545 1 1 Nitrosomonadaceae family 206379 0 2706 12 6 Nitrosospira 1 genus 35798 0 1115 7 4 species Nitrosospira lacus 1288494 0 1 416 35799 species Nitrosospira briensis 1 408 0 0 1 284 species Nitrosospira multiformis 1231 914 genus 1 Nitrosomonas 2 7 1585 0 44574 species Nitrosomonas communis 1 251 0 2609265 no rank 2 506 0 1 290 0 153948 species Nitrosomonas sp. AL212 1 216 0 261292 species Nitrosomonas sp. Is79A3 1 362 0 915 species Nitrosomonas europaea 44577 species Nitrosomonas ureae 1 243 0 221 1 0 916 Nitrosomonas eutropha species 0 5 57 1198 family 1 Gallionellaceae 90627 314343 genus 1 Sideroxydans 4 2 698 0 1 694 0 63745 species Sideroxydans lithotrophicus genus 1 Gallionella 96 0 2 10 443 433 1 0 370405 Gallionella capsiferriformans species family 2772226 0 4 1071 genus 1 Sulfuriferula 1778653 0 8 2 583 no rank 2637784 0 575 1 1 575 0 1985873 species Sulfuriferula sp. AH1 genus 1 Sulfuricella 935200 0 2 33 488 species Sulfuricella denitrificans 649841 0 1 455 2008793 1 Sterolibacteriaceae family 1504 17 5 0 0 771 2 22 1 Methyloversatilis genus 378210 749 1 0 2639971 no rank 749 1 0 1842540 Methyloversatilis sp. RAC08 species 1054211 Sulfuritalea 1 genus 716 16 2 0 748811 species Sulfuritalea hydrogenivorans 1 700 0 0 2414 14 10 Methylophilaceae 1 family 32011 0 371 3 1 1 Candidatus Methylopumilus genus 1679002 1581557 species Candidatus Methylopumilus planktonicus 1 146 0 1581680 species Candidatus Methylopumilus turicensis 1 224 0 6 2 264 0 16 genus 1 Methylophilus 0 1 258 no rank 2630143 1 258 0 1662285 species Methylophilus sp. TWE2 381 2 3 0 404 1 Methylobacillus genus 405 species Methylobacillus flagellatus 1 378 0 359407 genus Methylotenera 1 3 1 456 0 1 282 0 359408 species Methylotenera mobilis 173 1 0 1055487 Methylotenera versatilis species 0 932 9 3 Methylovorus 1 genus 81682 1 421 0 2634027 no rank 0 1 421 species Methylovorus sp. MP688 887061 species Methylovorus glucosotrophus 266009 0 1 502 0 172356 229 1733 Burkholderiales 1 order 80840 0 173 40 30213 family 1 Alcaligenaceae 506 0 1083 2 3 Orrella 1 genus 1921582 1080 1 0 1851544 Orrella dioscoreae species 242 1 0 1100891 genus 643674 Paenalcaligenes hominis species 242 1 0 genus 29574 0 523 2 84590 Taylorella asinigenitalis species 148 1 0 0 1 375 species Taylorella equigenitalis 29575 genus Achromobacter 1 222 0 328 6 10431 0 1 932 species Achromobacter insolitus 217204 832 1 0 2626865 no rank 0 1 832 species Achromobacter sp. AONIH1 1758194 Achromobacter denitrificans species 32002 0 2154 1 Achromobacter spanius species 217203 0 1994 1 0 1 4191 species Achromobacter xylosoxidans 85698 1 Castellaniella genus 359336 0 911 49 2 1 862 0 75697 species Castellaniella defragrans 1 200 0 1472344 genus Basilea psittacipulmonis species 1472345 0 200 1 507 genus 1 Alcaligenes 2 11 1504 0 511 species Alcaligenes faecalis 1 1493 0 Advenella 1 genus 290425 0 1081 3 6 species Advenella kashmirensis 310575 0 1 556 0 519 1 Advenella mimigardefordensis species 302406 90243 genus 455 1 0 Oligella urethralis species 90245 0 455 1 genus 1 Pusillimonas 305976 0 2 2 396 1 394 0 2640016 no rank 1007105 species Pusillimonas sp. T7-7 1 394 0 Bordetella 1 genus 517 0 13214 468 17 species Bordetella genomosp. 13 463040 0 1 761 Bordetella hinzii species 103855 0 1014 1 species Bordetella avium 521 0 1 660 Bordetella petrii species 94624 0 800 1 518 species Bordetella bronchiseptica 1 1371 0 species Bordetella pseudohinzii 1331258 0 1 848 1 418 0 35814 species Bordetella holmesii 2630031 no rank 1 728 0 728 1 0 1697043 Bordetella sp. H567 species 0 1 700 species Bordetella genomosp. 6 463024 520 species Bordetella pertussis 1 563 0 species Bordetella genomosp. 8 1416806 0 1 906 1 825 0 519 species Bordetella parapertussis 123899 species Bordetella trematum 1 820 0 696 1 0 1416803 Bordetella genomosp. 9 species 463014 species Bordetella flabilis 1 804 0 1 832 0 463025 species Bordetella bronchialis Burkholderiaceae 1 family 119060 0 63455 84 459 genus 1 Paraburkholderia 1822464 0 178 12 8860 Paraburkholderia sprentiae species 948107 0 651 1 Paraburkholderia xenovorans species 36873 0 762 1 2026199 species Paraburkholderia aromaticivorans 1 994 0 0 1343 1 Paraburkholderia caribensis species 75105 763 1 0 169430 Paraburkholderia hospita species 0 717 1 Paraburkholderia phymatum species 148447 0 1 704 species Paraburkholderia terrae 311230 no rank 2615204 0 570 1 1 570 0 1926494 species Paraburkholderia sp. SOS3 134537 Paraburkholderia fungorum species 625 1 0 778 1 0 252970 Paraburkholderia phenoliruptrix species 261302 Paraburkholderia phytofirmans species 775 1 0 2571159 genus 1 291 0 0 291 1 Paraburkholderia rhizoxinica species 412963 106589 1 Cupriavidus genus 8651 263 9 0 2640874 no rank 1960 2 0 species Cupriavidus sp. USMAHM13 1389192 0 1 999 0 961 1 Cupriavidus sp. USMAA2-4 species 876364 0 1 812 species Cupriavidus pinatubonensis 248026 106590 Cupriavidus necator species 1701 1 0 119219 Cupriavidus metallidurans species 762 1 0 367825 Cupriavidus sp. USMAA1020 species 1038 1 0 0 1256 1 Cupriavidus basilensis species 68895 1 859 0 82541 species Cupriavidus gilardii 93217 genus Pandoraea 1 115 10 5721 0 593 1 0 93221 Pandoraea pulmonicola species species Pandoraea norimbergensis 93219 0 1 659 0 1 485 species Pandoraea thiooxydans 445709 1 546 0 656178 species Pandoraea vervacti 1 638 0 93222 species Pandoraea sputorum Pandoraea oxalativorans species 573737 0 679 1 1 711 0 93220 species Pandoraea pnomenusa 0 566 1 Pandoraea apista species 93218 1 729 0 656179 species Pandoraea faecigallinarum Polynucleobacter 1 genus 44013 0 515 4 4 0 217 1 Polynucleobacter necessarius species 576610 1 137 0 1835254 species Polynucleobacter duraquae 1 157 0 576611 species Polynucleobacter asymbioticus 48736 Ralstonia 1 genus 6811 81 5 0 105219 Ralstonia mannitolilytica species 866 1 0 1 1608 0 329 species Ralstonia pickettii 0 3290 1 Ralstonia solanacearum species 305 1 966 0 190721 species Ralstonia insidiosa genus 1827195 0 1 802 758793 species Burkholderia sp. RPE64 1 802 0 genus 1 Burkholderia 32008 0 1682 41 31345 no rank 2613784 0 6146 11 0 528 1 Burkholderia sp. PAMC 28687 species 1795874 Burkholderia sp. CCGE1001 species 640510 0 767 1 1468409 species Burkholderia sp. 2002721687 1 364 0 species Burkholderia sp. Bp5365 1740162 0 1 372 0 429 1 Burkholderia sp. KJ006 species 416344 1097668 Burkholderia sp. YI23 species 713 1 0 Burkholderia sp. Bp7605 species 1740163 0 517 1 758796 Burkholderia sp. RPE67 species 798 1 0 species Burkholderia sp. CCGE1003 640512 0 1 618 1795043 Burkholderia sp. PAMC 26561 species 483 1 0 1678678 species Burkholderia sp. HB1 1 557 0 1409 1 0 337 Burkholderia glumae species 41899 Burkholderia plantarii species 951 1 0 87882 species group 19 14897 0 1 454 0 488447 species Burkholderia contaminans 0 519 1 Burkholderia seminalis species 488731 95485 species Burkholderia stabilis 1 712 0 488446 species Burkholderia latens 1 367 0 0 386 1 Burkholderia metallica species 488729 1 872 0 60552 species Burkholderia vietnamiensis 95486 species Burkholderia cenocepacia 1 2435 0 592 1 0 152480 Burkholderia ambifaria species 468 1 0 1503054 Burkholderia stagnalis species 2594 1 0 292 Burkholderia cepacia species Burkholderia lata species 482957 0 742 1 381 1 0 1207504 Burkholderia pseudomultivorans species 1 331 0 60550 species Burkholderia pyrrocinia 0 1 386 species Burkholderia dolosa 152500 species [Pseudomonas] mesoacidophila 265293 0 1 428 488732 Burkholderia diffusa species 428 1 0 1 383 0 1503055 species Burkholderia territorii species Burkholderia ubonensis 101571 0 1 1462 species Burkholderia multivorans 87883 0 1 957 28095 Burkholderia gladioli species 1615 1 0 7 4645 0 111527 species group 1637841 Burkholderia sp. MSMB0852 species 438 1 0 1 422 0 13373 species Burkholderia mallei 933 1 0 57975 Burkholderia thailandensis species 1637831 species Burkholderia sp. MSMB617WGS 1 413 0 0 1 416 species Burkholderia sp. MSMB0266 1637837 661 1 0 342113 Burkholderia oklahomensis species species Burkholderia pseudomallei 28450 0 1 1362 1 Oxalobacteraceae family 75682 0 21891 28 141 132 6 4562 0 963 genus Herbaspirillum 1 species Herbaspirillum frisingense 92645 0 1 1120 341045 species Herbaspirillum hiltneri 1 776 0 1 1039 0 964 species Herbaspirillum seropedicae species Herbaspirillum rubrisubalbicans 80842 0 1 855 2624150 no rank 1 640 0 0 640 1 Herbaspirillum sp. meg3 species 2025949 4 77 3578 0 202907 genus 1 Collimonas 1 1062 0 279058 species Collimonas arenae 1 1375 0 158899 species Collimonas fungivorans 279113 species Collimonas pratensis 1 1064 0 73 7 4631 0 29580 genus Janthinobacterium 1 0 1 725 species Janthinobacterium agaricidamnosum 55508 2945 4 0 2610881 no rank 375286 species Janthinobacterium sp. Marseille 1 495 0 1938606 Janthinobacterium sp. LM6 species 874 1 0 419 1 0 1236179 Janthinobacterium sp. B9-8 species 0 1157 1 Janthinobacterium sp. 1_2014MBL_MicDiv species 1644131 888 1 0 368607 Janthinobacterium svalbardensis species 846 genus 3004 1 0 847 species Oxalobacter formigenes 1 3004 0 0 806 16 3 Herminiimonas 1 genus 303379 1809410 Herminiimonas arsenitoxidans species 348 1 0 442 1 0 204773 Herminiimonas arsenicoxydans species genus 1 Massilia 149698 0 6 89 5169 0 1 1077 species Massilia sp. ZMN-3 2072590 1141883 species Massilia putida 1 1019 0 Massilia sp. B2 species 2045208 0 878 1 2106 2 0 2609279 no rank 0 1139 1 Massilia sp. NR 4-1 species 1678028 0 1 967 species Massilia sp. WG5 1707785 0 57 565 40691 family 1 Comamonadaceae 80864 0 5 3 1475 genus Ottowia 1 219181 0 752 1 Ottowia sp. KADR8-3 species 2109914 0 1 718 no rank 2645081 0 718 1 Ottowia sp. oral taxon 894 species 1658672 2516 10 4 0 47420 Hydrogenophaga 1 genus 1 643 0 1763535 species Hydrogenophaga crassostreae 2 1863 0 2610897 no rank Hydrogenophaga sp. RAC07 species 1842537 0 784 1 species Hydrogenophaga sp. PBC 795665 0 1 1079 0 2 1025 genus 2490452 species Comamonadaceae bacterium B1 1458426 0 1 576 1 449 0 1458425 species Comamonadaceae bacterium A1 0 1 2 1332 genus 1 Alicycliphilus 201096 1 1331 0 179636 species Alicycliphilus denitrificans 0 1 870 genus 2678886 0 870 1 Melaminivora sp. SC2-7 species 2116657 3309 78 5 0 28065 Rhodoferax 1 genus Rhodoferax ferrireducens species 192843 0 953 1 species Rhodoferax koreense 1842727 0 1 810 1 586 0 1484693 species Rhodoferax saidenbachensis species Rhodoferax antarcticus 81479 0 1 882 2 5 686 0 352450 genus 1 Simplicispira 1 681 0 2109915 species Simplicispira sp. SC1-8 Variovorax 1 genus 34072 0 5778 5 91 2850 1 0 34073 Variovorax paradoxus species 1071 1 0 436515 Variovorax boronicumulans species 0 2 1766 no rank 663243 0 1269 1 Variovorax sp. PMC12 species 2126319 1795631 Variovorax sp. PAMC 28711 species 497 1 0 5 180 4946 0 80865 genus 1 Delftia species Delftia acidovorans 80866 0 1 1231 180282 species Delftia tsuruhatensis 1 1274 0 0 2261 2 no rank 2613839 species Delftia sp. Cs1-4 742013 0 1 1188 species Delftia sp. HK171 1920191 0 1 1073 238749 genus 1 Diaphorobacter 2 2 879 0 877 1 0 1546149 Diaphorobacter polyhydroxybutyrativorans species 1436289 genus 1 578 0 1 578 0 1436290 species Candidatus Symbiobacter mobilis 2 14 942 0 1649468 genus 1 Melaminivora 0 1 928 no rank 2641902 0 928 1 Melaminivora sp. SC2-9 species 2109913 1 Ramlibacter genus 174951 0 1800 2 19 94132 Ramlibacter tataouinensis species 1781 1 0 12916 genus 1 Acidovorax 254 9 6916 0 species Acidovorax sp. NA3 553814 0 1 450 0 786 1 Acidovorax citrulli species 80869 1 993 0 80867 species Acidovorax avenae no rank 2684926 0 4 3704 0 1 706 species Acidovorax sp. T1 1858609 232721 Acidovorax sp. JS42 species 897 1 0 0 1 1004 species Acidovorax sp. RAC01 1842533 0 1 1097 species Acidovorax sp. KKS102 358220 721785 species Acidovorax ebreus 1 729 0 Comamonas 1 genus 283 0 3705 29 4 0 872 1 Comamonas kerstersii species 225992 Comamonas testosteroni species 285 0 1941 1 1082851 species Comamonas serinivorans 1 863 0 0 737 1 genus 364316 364317 species Verminephrobacter eiseniae 1 737 0 1673 3 11 0 52972 1 Polaromonas genus 2638319 no rank 1 904 0 1 904 0 296591 species Polaromonas sp. JS666 216465 Polaromonas naphthalenivorans species 758 1 0 665874 1 Limnohabitans genus 959 3 3 0 2626134 no rank 956 2 0 1 459 0 1678129 species Limnohabitans sp. 103DPR2 0 497 1 Limnohabitans sp. 63ED37-2 species 1678128 0 17 9118 no rank 224471 0 2 21 904 genus Methylibium 1 316612 Methylibium petroleiphilum species 105560 0 883 1 0 1284 2 40 Rubrivivax 1 genus 28067 1244 1 0 28068 Rubrivivax gelatinosus species 1 Roseateles genus 93681 0 1040 2 38 0 1002 1 Roseateles depolymerans species 76731 genus Paucibacter 1 318147 0 2 26 1023 no rank 2642959 0 997 1 1768242 Paucibacter sp. KCTC 42545 species 997 1 0 32012 genus Thiomonas 1 14 2 1256 0 0 1 1242 species Thiomonas intermedia 926 993 31 2 0 65047 1 Mitsuaria genus 0 1 962 no rank 2648776 962 1 0 1658665 Mitsuaria sp. 7 species 0 781 1 [Polyangium] brachysporum species 413882 0 1010 37 2 1 Rhizobacter genus 212743 Rhizobacter gummiphilus species 946333 0 973 1 genus 1 Leptothrix 88 0 2 24 827 Leptothrix cholodnii species 34029 0 803 1 80841 no rank 5255 2 0 species Burkholderiales bacterium GJ-E10 1469502 0 1 428 Burkholderiales bacterium YL45 species 1834205 0 4827 1 no rank 33809 0 801 2 1 605 0 1904640 species Betaproteobacteria bacterium GR16-43 beta proteobacterium CB species 543913 0 196 1 0 1677 11 no rank 119066 genus 1301080 0 6 1 species Candidatus Nasuia deltocephalinicola 1160784 0 1 6 189384 genus 1 34 0 34 1 0 189385 Candidatus Tremblaya princeps species 0 716 10 2 Candidatus Accumulibacter 1 genus 327159 1 706 0 327160 species Candidatus Accumulibacter phosphatis 1 Kinetoplastibacterium genus 33055 0 833 6 6 species Candidatus Kinetoplastibacterium crithidii 33056 0 1 216 Candidatus Kinetoplastibacterium galatii species 994695 0 119 1 233181 Kinetoplastibacterium blastocrithidii species 173 1 0 1 216 0 994692 species Candidatus Kinetoplastibacterium desouzaii 994696 Candidatus Kinetoplastibacterium oncopeltii species 103 1 0 genus 1381133 0 1 88 species Candidatus Profftella armatura 669502 0 1 88 0 460730 870 992 1 Gammaproteobacteria class 1236 135614 order 1 Xanthomonadales 53 406 38348 0 1775411 family 1 Rhodanobacteraceae 14 70 6142 0 1 Dokdonella genus 323413 0 844 2 4 species Dokdonella koreensis 323415 0 1 840 Frateuria 1 genus 70411 0 506 9 2 0 1 497 species Frateuria aurantia 81475 0 1 479 genus 2233801 1 479 0 2021234 species Xanthomonadales bacterium D13 1 Dyella genus 231454 0 2509 36 4 0 1 780 species Dyella jiangningensis 1379159 1 951 0 231455 species Dyella japonica species Dyella thiooxydans 445710 0 1 742 0 2 22 1022 genus 1 Rhodanobacter 75309 1 1000 0 666685 species Rhodanobacter denitrificans 712 8 2 0 242605 Luteibacter 1 genus 242606 Luteibacter rhizovicinus species 704 1 0 family Xanthomonadaceae 1 32033 0 384 38 31800 2355 28 3 0 83618 1 Pseudoxanthomonas genus 747 1 0 415229 Pseudoxanthomonas spadix species 1 1580 0 314722 species Pseudoxanthomonas suwonensis 0 5 37 3899 genus 1 Lysobacter 68 1044 1 0 69 Lysobacter enzymogenes species Lysobacter capsici species 435897 0 1014 1 787 1 0 262324 Lysobacter gummosus species Lysobacter antibioticus species 84531 0 1017 1 Xanthomonas 1 genus 338 0 13350 17 716 species Xanthomonas hortorum 56454 0 1 494 366650 species Xanthomonas alfalfae 1 519 0 56460 Xanthomonas vesicatoria species 690 1 0 1 483 0 53413 species Xanthomonas axonopodis 0 1 482 species Xanthomonas fragariae 48664 0 1 440 species Xanthomonas phaseoli 1985254 339 species Xanthomonas campestris 1 2234 0 865 1 0 347 Xanthomonas oryzae species 356 1 0 29447 Xanthomonas albilineans species 0 1259 1 Xanthomonas translucens species 343 0 2239 2 species group 643453 366648 Xanthomonas fuscans species 590 1 0 1 1649 0 346 species Xanthomonas citri 442694 species Xanthomonas perforans 1 782 0 0 1 350 species Xanthomonas vasicola 56459 Xanthomonas sacchari species 56458 0 919 1 456327 species Xanthomonas euvesicatoria 1 522 0 580 3 2 0 2370 1 Xylella genus Xylella fastidiosa species 2371 0 577 1 83614 genus 1 460 0 460 1 0 2006110 Luteimonas sp. 100111 species 9 333 10772 0 40323 genus 1 Stenotrophomonas species Stenotrophomonas nitritireducens 83617 0 1 621 128780 species Stenotrophomonas acidaminiphila 1 1505 0 4 2616 0 196198 no rank 0 617 1 Stenotrophomonas sp. MYb57 species 1827305 0 710 1 Stenotrophomonas sp. LM091 species 1904944 1 649 0 2005046 species Stenotrophomonas sp. WZN-1 0 1 640 species Stenotrophomonas sp. KCTC 12332 1793721 995085 species group 1 5069 0 0 1 5069 species Stenotrophomonas maltophilia 40324 628 1 0 216778 Stenotrophomonas rhizophila species order Oceanospirillales 1 135619 0 163 66 22332 0 12128 190 30 1 Halomonadaceae family 28256 2 27 512 0 376488 genus Halotalea 1 0 485 1 Halotalea alkalilenta species 376489 759 10 2 0 404432 1 Salinicola genus Salinicola tamaricis species 1771309 0 749 1 0 2 1 843 genus 1 Cobetia 204286 species Cobetia marina 28258 0 1 842 114403 no rank 84 3 0 1 67 0 1495768 genus species Candidatus Evansia muelleri 1495769 0 1 67 0 14 1 genus 235572 Candidatus Portiera aleyrodidarum species 91844 0 14 1 genus 114185 0 3 1 114186 Candidatus Carsonella ruddii species 3 1 0 1 Kushneria genus 504090 0 1425 1 3 Kushneria konosiri species 698828 0 571 1 species Kushneria marisflavi 157779 0 1 853 1 Halomonas genus 2745 0 7879 15 118 Halomonas chromatireducens species 507626 0 543 1 1178482 species Halomonas huangheensis 1 698 0 no rank 2609666 0 8 4178 460 1 0 1504981 Halomonas sp. KO116 species 1610576 Halomonas sp. R57-5 species 502 1 0 1883416 Halomonas sp. 1513 species 905 1 0 species Halomonas sp. 'Soap Lake #7' 1962264 0 1 429 0 1 856 species Halomonas sp. SF2003 2136172 1118153 Halomonas sp. GFAJ-1 species 326 1 0 Halomonas sp. GT species 1971364 0 271 1 species Halomonas sp. 'Soap Lake #6' 1949203 0 1 429 1897729 species Halomonas aestuarii 1 600 0 115561 species Halomonas hydrothermalis 1 589 0 Halomonas beimenensis species 475662 0 858 1 0 295 1 Halomonas campaniensis species 213554 436 2 3 0 42054 1 Chromohalobacter genus 158080 Chromohalobacter salexigens species 433 1 0 2 3 478 0 224379 family Hahellaceae 1 Hahella 1 genus 158481 0 476 3 2 0 473 1 Hahella chejuensis species 158327 9 4 882 0 255527 family 1 Saccharospirillaceae 3 2 382 0 230494 genus Reinekea 1 1336806 Reinekea forsetii species 379 1 0 0 491 1 genus 1445504 491 1 0 1445505 Gynuella sunshinyii species 3532 11 31 0 135620 1 Oceanospirillaceae family 0 4 2 394 genus 1 Bacterioplanes 1537406 0 1 390 species Bacterioplanes sanyensis 1249553 187492 genus 1 334 0 0 1 334 species Thalassolituus oleivorans 187493 1 Marinomonas genus 28253 0 1206 1 4 Marinomonas mediterranea species 119864 0 328 1 0 1 387 species Marinomonas posidonica 936476 0 1 490 no rank 196814 0 490 1 Marinomonas sp. MWYL1 species 400668 genus 188907 0 1 535 0 535 1 Oleispira antarctica species 188908 0 1032 2 5 1 Marinobacterium genus 48075 1027 1 0 1821621 Marinobacterium aestuarii species family 1 Alcanivoracaceae 224372 0 9 29 3474 59753 genus 1 Alcanivorax 6 58 2727 0 no rank 2638842 0 1 271 0 1 271 species Alcanivorax sp. NBRC 101098 1113728 634 1 0 1306787 Alcanivorax pacificus species 1 247 0 59754 species Alcanivorax borkumensis 0 751 1 Alcanivorax xenomutans species 1094342 0 766 1 Alcanivorax dieselolei species 285091 2025617 genus Ketobacter 1 7 2 718 0 0 1 711 species Ketobacter alkanivorans 1917421 1920240 1 Kangiellaceae family 1215 15 6 0 1 Kangiella genus 261963 0 1200 11 5 1144748 Kangiella sediminilitoris species 419 1 0 313 1 0 1561924 Kangiella profundi species 1 195 0 261964 species Kangiella koreensis Kangiella geojedonensis species 914150 0 262 1 2 460 0 191033 family 460 2 7 0 141450 Oleiphilus 1 genus 141451 Oleiphilus messinensis species 453 1 0 Vibrionales 1 order 135623 0 20490 44 15 641 family Vibrionaceae 1 70 43 20475 0 0 4 4 1015 genus Aliivibrio 1 511678 40269 Aliivibrio salmonicida species 327 1 0 297 1 0 80852 Aliivibrio wodanis species species Aliivibrio fischeri 668 0 1 387 246861 Grimontia 1 genus 360 2 1 0 Grimontia hollisae species 673 0 359 1 2042066 1 Paraphotobacterium genus 231 1 2 0 230 1 0 1755811 Paraphotobacterium marinum species genus 1 Vibrio 662 0 30 290 16272 0 1 489 species Vibrio scophthalmi 45658 674 species Vibrio mimicus 1 679 0 0 1 212 species group 1891919 Vibrio tubiashii species 29498 0 212 1 0 451 1 Vibrio tapetis species 52443 553239 Vibrio breoganii species 310 1 0 2614977 no rank 669 2 0 0 364 1 Vibrio sp. EJY3 species 1116375 305 1 0 2014742 Vibrio sp. 2521-89 species 55601 species Vibrio anguillarum 1 412 0 212663 Vibrio tasmaniensis species 445 1 0 0 744 1 Vibrio cholerae species 666 29494 Vibrio furnissii species 508 1 0 687 species Vibrio gazogenes 1 392 0 412 1 0 28173 Vibrio nigripulchritudo species Vibrio tritonius species 1435069 0 420 1 0 1 224 species Vibrio hyugaensis 1534743 Vibrio fluvialis species 676 0 580 1 0 10 6545 species group 717610 1 282 0 766224 species Vibrio jasicida 680 Vibrio campbellii species 1158 1 0 species Vibrio alginolyticus 663 0 1 1138 0 931 1 Vibrio natriegens species 691 2315253 species subgroup 643 2 0 0 1 392 species Vibrio diabolicus 50719 150340 species Vibrio antiquarius 1 251 0 0 1 752 species Vibrio harveyi 669 0 1 963 species Vibrio parahaemolyticus 670 0 268 1 Vibrio rotiferianus species 190895 410 1 0 696485 Vibrio owensii species 946 1 0 190893 Vibrio coralliilyticus species 0 281 1 Vibrio qinghaiensis species 2025808 1 1263 0 672 species Vibrio vulnificus 657 genus Photobacterium 1 4 2 2527 0 0 966 1 Photobacterium gaetbulicola species 1295392 1 940 0 74109 species Photobacterium profundum 619 1 0 38293 Photobacterium damselae species 1706369 order 1 Cellvibrionales 27 28 6834 0 0 1210 16 7 1 Spongiibacteraceae family 1706375 0 2 2 413 genus Zhongshania 1 1434050 0 1 411 species Zhongshania aliphaticivorans 1470434 2 4 312 0 630749 genus Spongiibacter 1 1 308 0 2631504 no rank 1620392 Spongiibacter sp. IMCC21906 species 308 1 0 1084558 Oceanicoccus 1 genus 469 2 2 0 716816 species Oceanicoccus sagamiensis 1 467 0 family Halieaceae 1 1706372 0 12 4 883 10 3 871 0 1217416 genus Halioglobus 1 species Halioglobus pacificus 930806 0 1 407 1 454 0 930805 species Halioglobus japonicus 1706373 Microbulbiferaceae 1 family 1511 12 5 0 48073 1 Microbulbifer genus 1499 14 4 0 species Microbulbifer thermotolerans 252514 0 1 419 species Microbulbifer agarilyticus 260552 0 1 500 1769779 species Microbulbifer aggregans 1 566 0 1 Cellvibrionaceae family 1706371 0 3203 11 11 0 36 4 1517 genus Cellvibrio 1 10 0 574 1 Cellvibrio japonicus species 155077 no rank 2624793 0 907 2 species Cellvibrio sp. PSBB006 1987723 0 1 530 1945512 species Cellvibrio sp. PSBB023 1 377 0 genus 316625 0 1 395 species Saccharophagus degradans 86304 0 1 395 461 3 2 0 447467 1 Simiduia genus 1 458 0 447471 species Simiduia agarivorans genus 2036021 0 1 387 1 387 0 1737490 species Agarilytica rhodophyticola 2 2 432 0 2425 genus Teredinibacter 1 2426 Teredinibacter turnerae species 430 1 0 no rank 118884 0 11 2443 2 320 0 655184 genus 0 114 1 Candidatus Thioglobus autotrophicus species 1705394 species Candidatus Thioglobus singularis 1427364 0 1 206 0 473 14 2 1 Thiolapillus genus 1608298 1076588 Thiolapillus brandeum species 459 1 0 0 1 2 463 genus Pseudohongiella 1 1524249 Pseudohongiella spirulinae species 1249552 0 462 1 clade 198346 0 203 1 186490 Candidatus Baumannia cicadellinicola species 203 1 0 1 491 0 349742 genus 1543721 Sedimenticola thiotaurini species 491 1 0 clade 32036 0 3 493 410330 species Calyptogena okutanii thioautotrophic gill symbiont 1 133 0 113267 species Bathymodiolus septemdierum thioautotrophic gill symbiont 1 193 0 0 167 1 genus 1541743 1 167 0 386487 species Candidatus Ruthia magnifica 101730 129 476 0 72274 1 Pseudomonadales order family Moraxellaceae 1 468 0 42 29 14235 genus 1 Psychrobacter 497 0 11 24 2386 0 1 301 species Psychrobacter urativorans 45610 177 1 0 261164 Psychrobacter alimentarius species 0 6 1423 no rank 196806 Psychrobacter sp. P11G5 species 1699624 0 256 1 1699622 Psychrobacter sp. P2G3 species 199 1 0 349106 Psychrobacter sp. PRwf-1 species 309 1 0 0 211 1 Psychrobacter sp. DAB_AL43B species 1028416 Psychrobacter sp. G species 571800 0 125 1 0 323 1 Psychrobacter sp. AntiMn-1 species 1720344 334543 Psychrobacter arcticus species 292 1 0 0 1 169 species Psychrobacter cryohalolentis 330922 5 17 1936 0 475 genus Moraxella 1 Moraxella catarrhalis species 480 0 419 1 1 407 0 386891 species Moraxella bovoculi species Moraxella ovis 29433 0 1 279 species Moraxella osloensis 34062 0 1 814 25 129 9884 0 469 genus 1 Acinetobacter 202950 species 278 1 0 0 278 1 Acinetobacter sp. ADP1 strain 62977 species Acinetobacter haemolyticus 29430 0 1 353 species Acinetobacter indicus 756892 0 1 375 Acinetobacter larvae species 1789224 0 295 1 40214 Acinetobacter johnsonii species 403 1 0 196816 no rank 1950 7 0 1407071 species Acinetobacter sp. TGL-Y2 1 297 0 0 1 295 species Acinetobacter sp. ACNIH2 1758189 1 310 0 1646498 species Acinetobacter sp. TTH0-4 0 1 294 species Acinetobacter sp. ACNIH1 1636603 Acinetobacter sp. LoGeW2-3 species 1808001 0 345 1 Acinetobacter sp. NCu2D-2 species 1608473 0 236 1 2079596 Acinetobacter sp. SWBY1 species 173 1 0 242 1 0 487316 Acinetobacter soli species 3737 5 0 909768 species group 470 species Acinetobacter baumannii 1 1485 0 0 1 141 species Acinetobacter lactucae 1785128 471 Acinetobacter calcoaceticus species 680 1 0 Acinetobacter pittii species 48296 0 990 1 species Acinetobacter nosocomialis 106654 0 1 441 Acinetobacter schindleri species 108981 0 430 1 species Acinetobacter oleivorans 1148157 0 1 299 211 1 0 1324350 Acinetobacter equi species 0 424 1 Acinetobacter radioresistens species 40216 0 1 395 species Acinetobacter junii 40215 0 1 363 species Acinetobacter bereziniae 106648 family 1 Pseudomonadaceae 135621 0 86 495 87019 Oblitimonas 1 genus 1849530 0 332 1 2 0 331 1 Oblitimonas alkaliphila species 1697053 0 3 1984 subfamily 351 13 3 1984 0 352 genus Azotobacter 1 species Azotobacter chroococcum 353 0 1 1212 1 759 0 354 species Azotobacter vinelandii 0 2932 80 84208 genus 1 Pseudomonas 286 583 1 0 219572 Pseudomonas antarctica species 0 364 1 Pseudomonas lurida species 244566 0 1 603 species Pseudomonas cremoricolorata 157783 0 1227 1 Pseudomonas frederiksbergensis species 104087 1307 1 0 930166 Pseudomonas brassicacearum species species group 136846 0 2 4940 578833 species subgroup 1 4368 0 0 1 4368 species Pseudomonas stutzeri 316 74829 species Pseudomonas balearica 1 572 0 0 1 544 species Pseudomonas versuta 1788301 species Pseudomonas parafulva 157782 0 1 1038 1119 1 0 198620 Pseudomonas koreensis species 0 716 1 Pseudomonas psychrotolerans species 237610 65741 Pseudomonas knackmussii species 747 1 0 species Pseudomonas rhizosphaerae 216142 0 1 520 312306 species Pseudomonas entomophila 1 648 0 species Pseudomonas alkylphenolica 237609 0 1 550 16897 30 0 196821 no rank 585 1 0 2018067 Pseudomonas sp. FDAARGOS_380 species 761 1 0 1028989 Pseudomonas sp. StFLB209 species 457 1 0 2049589 Pseudomonas sp. HLS-6 species 1659194 Pseudomonas sp. GR 6-02 species 503 1 0 Pseudomonas sp. MRSN12121 species 1611770 0 748 1 0 545 1 Pseudomonas sp. Os17 species 1500686 species Pseudomonas sp. ATCC 13867 1294143 0 1 829 species Pseudomonas sp. URMO17WK12:I11 1283291 0 1 941 1636610 Pseudomonas sp. PONIH3 species 588 1 0 472 1 0 69328 Pseudomonas sp. VLB120 species 0 547 1 Pseudomonas sp. JY-Q species 1338689 0 1 467 species Pseudomonas sp. UW4 1207075 1856685 Pseudomonas sp. TCU-HL1 species 609 1 0 species Pseudomonas sp. LPH1 1898684 0 1 717 species Pseudomonas sp. St29 1500687 0 1 503 0 466 1 Pseudomonas sp. FGI182 species 1259844 0 282 1 Pseudomonas sp. MYb193 species 1827300 468 1 0 2083053 Pseudomonas sp. SWI44 species 0 601 1 Pseudomonas sp. SWI36 species 2083052 2083055 species Pseudomonas sp. LH1G9 1 636 0 2083051 Pseudomonas sp. SWI6 species 453 1 0 0 1 391 species Pseudomonas sp. LG1D9 2083054 species Pseudomonas sp. S-6-2 1931241 0 1 553 1534110 species Pseudomonas sp. DR 5-09 1 568 0 2067572 Pseudomonas sp. NC02 species 441 1 0 Pseudomonas sp. CCOS 191 species 1649877 0 592 1 0 697 1 Pseudomonas sp. CC6-YY-74 species 1930532 2069256 species Pseudomonas sp. XWY-1 1 576 0 species Pseudomonas sp. TKP 1415630 0 1 461 species Pseudomonas sp. M30-35 1981174 0 1 440 0 6 10619 species group 136841 0 1547 1 Pseudomonas citronellolis species 53408 species Pseudomonas resinovorans 53412 0 1 739 43263 species Pseudomonas alcaligenes 1 713 0 287 species Pseudomonas aeruginosa 1 3446 0 300 Pseudomonas mendocina species 2863 1 0 species subgroup 1232139 0 1 1311 1311 1 0 1149133 Pseudomonas furukawaii species 8296 8 0 136849 species group 1 445 0 2775504 no rank 1 445 0 1206777 species Pseudomonas sp. Lz4W 33069 Pseudomonas viridiflava species 690 1 0 0 500 1 Pseudomonas cichorii species 36746 251698 species subgroup 2 1748 0 1 953 0 29438 species Pseudomonas savastanoi 795 1 0 47877 Pseudomonas amygdali species 1 513 0 46257 species Pseudomonas avellanae 0 1 3495 species subgroup 251695 0 1 3495 species Pseudomonas syringae 317 0 1 905 species Pseudomonas syringae group genomosp. 3 251701 species group 136842 0 2 4115 1 3094 0 587753 species Pseudomonas chlororaphis 296 Pseudomonas fragi species 1021 1 0 species Pseudomonas cerasi 1583341 0 1 475 Pseudomonas alcaliphila species 101564 0 778 1 136845 species group 13293 6 0 Pseudomonas monteilii species 76759 0 1747 1 690 1 0 47885 Pseudomonas oryzihabitans species 0 1 7516 species Pseudomonas putida 303 1 1253 0 78327 species Pseudomonas mosselii 70775 Pseudomonas plecoglossicida species 513 1 0 1 1574 0 47880 species Pseudomonas fulva 497 1 0 1853130 Pseudomonas silesiensis species 0 11400 9 species group 136843 47879 Pseudomonas corrugata species 548 1 0 species Pseudomonas orientalis 76758 0 1 485 635 1 0 75612 Pseudomonas mandelii species 1 505 0 76761 species Pseudomonas veronii 380021 Pseudomonas protegens species 730 1 0 0 436 1 Pseudomonas poae species 200451 Pseudomonas trivialis species 200450 0 723 1 Pseudomonas fluorescens species 294 0 6370 1 968 1 0 47878 Pseudomonas azotoformans species 77 99 31009 0 135622 order 1 Alteromonadales 0 1679 8 family 267889 genus Thalassotalea 1 1518149 0 1 2 201 0 200 1 Thalassotalea crassostreae species 1763536 28228 1 Colwellia genus 1478 6 4 0 0 887 3 no rank 196834 Colwellia sp. PAMC 21821 species 1816219 0 401 1 0 1 215 species Colwellia sp. PAMC 20917 1816218 58049 Colwellia sp. MT41 species 271 1 0 0 172 1 Colwellia beringensis species 1967665 1 415 0 28229 species Colwellia psychrerythraea 267891 family 2 280 0 0 280 2 21 Moritella 1 genus 58050 0 259 1 Moritella viscosa species 80854 27 44 10654 0 72275 family 1 Alteromonadaceae 1621534 genus 273 1 0 Paraglaciecola psychrophila species 326544 0 273 1 2742 genus 1 Marinobacter 10 67 5494 0 1586 3 0 83889 no rank 0 1 659 species Marinobacter sp. LQ44 1749259 1 313 0 490759 species Marinobacter sp. BSs20148 Marinobacter sp. CP1 species 1671721 0 614 1 1033846 species Marinobacter adhaerens 1 551 0 species Marinobacter salinus 1874317 0 1 495 1420917 Marinobacter salarius species 648 1 0 0 717 1 Marinobacter similis species 1420916 0 1 332 species Marinobacter psychrophilus 330734 0 1 1098 species Marinobacter hydrocarbonoclasticus 2743 1 391 0 261825 genus 1 391 0 680279 species Agarivorans gilvus 3326 24 10 0 226 Alteromonas 1 genus 0 1 332 species Alteromonas stellipolaris 233316 0 911 1 Alteromonas macleodii species 28108 2614992 no rank 3 780 0 1 242 0 2058133 species Alteromonas sp. MB-3u-76 171 1 0 1777491 Alteromonas sp. Mac1 species Alteromonas sp. RW2A1 species 1917158 0 367 1 175 1 0 287094 Alteromonas addita species 314275 Alteromonas mediterranea species 578 1 0 0 249 1 Alteromonas australica species 589873 0 277 1 Alteromonas naphthalenivorans species 715451 0 2 654 genus 89404 1 184 0 2618684 no rank 1 184 0 983545 species Glaciecola sp. 4H-3-7+YE-5 Glaciecola nitratireducens species 300231 0 470 1 1751872 genus Lacimicrobium 1 7 2 472 0 0 1 465 species Lacimicrobium alkaliphilum 1526571 0 844 5 6 Idiomarinaceae 1 family 267893 0 4 838 genus 135575 135577 species Idiomarina loihiensis 1 238 0 Idiomarina piscisalsi species 1096243 0 168 1 0 2 432 no rank 2614829 1 221 0 2100422 species Idiomarina sp. OT37-5b 2055892 Idiomarina sp. X4 species 211 1 0 0 26 25 6530 family 1 Pseudoalteromonadaceae 267888 Pseudoalteromonas 1 genus 53246 0 6504 24 100 species Pseudoalteromonas agarivorans 176102 0 1 220 0 235 1 Pseudoalteromonas arctica species 394751 0 440 1 Pseudoalteromonas rubra species 43658 Pseudoalteromonas luteoviolacea species 43657 0 455 1 194690 no rank 1458 5 0 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 1720343 0 1 421 283699 Pseudoalteromonas sp. Bsw20308 species 239 1 0 0 1 294 species Pseudoalteromonas sp. NC201 1514074 0 1 262 species Pseudoalteromonas sp. SM9913 234831 1761891 Pseudoalteromonas sp. 13-15 species 242 1 0 species Pseudoalteromonas spongiae 298657 0 1 388 0 1 265 species Pseudoalteromonas tetraodonis 43659 species Pseudoalteromonas piscicida 43662 0 1 271 Pseudoalteromonas phenolica species 161398 0 315 1 28109 Pseudoalteromonas nigrifaciens species 184 1 0 0 277 1 Pseudoalteromonas tunicata species 314281 0 1 161 species Pseudoalteromonas aliena 247523 1 381 0 1348114 species Pseudoalteromonas piratica 187 1 0 28107 Pseudoalteromonas espejiana species 288 Pseudoalteromonas atlantica species 344 1 0 178 1 0 166935 Pseudoalteromonas translucida species 1 201 0 228 species Pseudoalteromonas haloplanktis 0 1 154 species Pseudoalteromonas marina 267375 152297 species Pseudoalteromonas issachenkonii 1 290 0 267892 1 Ferrimonadaceae family 945 4 3 0 Ferrimonas 1 genus 44011 0 941 3 2 species Ferrimonas balearica 44012 0 1 938 family Shewanellaceae 1 267890 0 25 40 9339 1 Shewanella genus 22 0 9299 24 91 1 343 0 2018305 species Shewanella bicestrii 70863 Shewanella oneidensis species 245 1 0 Shewanella violacea species 60217 0 373 1 60478 Shewanella amazonensis species 617 1 0 species Shewanella putrefaciens 24 0 1 330 Shewanella halifaxensis species 271098 0 360 1 species Shewanella baltica 62322 0 1 683 1 378 0 56812 species Shewanella frigidimarina 1 387 0 60961 species Shewanella woodyi 0 6 2006 no rank 196818 2029986 Shewanella sp. WE21 species 228 1 0 223 1 0 2059264 Shewanella sp. Pdp11 species 324 1 0 60480 Shewanella sp. MR-4 species 351745 species Shewanella sp. W3-18-1 1 368 0 0 404 1 Shewanella sp. ANA-3 species 94122 species Shewanella sp. MR-7 60481 0 1 459 0 1 515 species Shewanella psychrophila 225848 705 1 0 359303 Shewanella loihica species Shewanella pealeana species 70864 0 304 1 93973 species Shewanella japonica 1 483 0 species Shewanella piezotolerans 404011 0 1 331 Shewanella sediminis species 271097 0 441 1 260364 species Shewanella marisflavi 1 304 0 0 403 1 Shewanella denitrificans species 192073 3 2 661 0 267894 family Psychromonadaceae 1 659 2 0 67572 genus 2614957 no rank 1 256 0 0 1 256 species Psychromonas sp. CNPT3 314282 357794 Psychromonas ingrahamii species 403 1 0 135615 order 1 Cardiobacteriales 4 2 89 0 868 family 85 1 0 genus 869 0 85 1 870 species Dichelobacter nodosus 1 85 0 4 7 537 0 1775403 order 1 Nevskiales 0 2 521 family 2689614 6 2 521 0 469322 genus Steroidobacter 1 species Steroidobacter denitrificans 465721 0 1 515 Sinobacteraceae family 568386 0 9 1 order 1 Methylococcales 135618 0 41 13 3851 3810 27 12 0 403 1 Methylococcaceae family 0 463 2 1 1 Methylomicrobium genus 39773 0 1 462 species Methylomicrobium alcaliphilum 271065 787 15 2 0 413 Methylococcus 1 genus Methylococcus capsulatus species 414 0 772 1 416 genus 1 Methylomonas 5 14 2108 0 species Methylomonas methanica 421 0 1 414 1538553 Methylomonas denitrificans species 399 1 0 0 1 647 no rank 2608980 species Methylomonas sp. DH-1 1727196 0 1 647 0 634 1 Methylomonas koyamae species 702114 762296 Methylovulum 1 genus 425 2 8 0 1704499 species Methylovulum psychrotolerans 1 417 0 0 2 1246 no rank 33811 0 1 566 species gamma proteobacterium HdN1 83406 1 680 0 1248727 species endosymbiont of unidentified scaly snail isolate Monju 0 29 118 23736 order Aeromonadales 1 135624 84642 family Aeromonadaceae 1 140 28 23618 0 0 5 2 1263 genus Oceanimonas 1 129577 no rank 2636315 0 1 1258 511062 species Oceanimonas sp. GK1 1 1258 0 0 18 1140 19320 genus Aeromonas 1 642 4277 1 0 644 Aeromonas hydrophila species 558964 species Aeromonas aquatica 1 843 0 654 species Aeromonas veronii 1 2169 0 196024 Aeromonas dhakensis species 843 1 0 no rank 257493 0 5758 8 827 1 0 2033033 Aeromonas sp. CU5 species 1 829 0 1636609 species Aeromonas sp. ASNIH4 species Aeromonas sp. ASNIH7 1920107 0 1 606 Aeromonas sp. ASNIH1 species 1636606 0 656 1 0 1 959 species Aeromonas sp. CA23 2033032 1636608 Aeromonas sp. ASNIH3 species 586 1 0 1 783 0 1758179 species Aeromonas sp. ASNIH5 1636607 species Aeromonas sp. ASNIH2 1 512 0 645 species Aeromonas salmonicida 1 1536 0 species Aeromonas rivipollensis 948519 0 1 820 species Aeromonas schubertii 652 0 1 713 648 species Aeromonas caviae 1 568 0 0 1 653 species Aeromonas media 651 1 3 1250 0 225143 genus Oceanisphaera 1 0 1 180 species Oceanisphaera sp. AMac2203 1903694 species Oceanisphaera profunda 1416627 0 1 1069 genus Tolumonas 1 43947 0 5 2 657 652 1 0 43948 Tolumonas auensis species 347533 genus 1 Zobellella 2 8 988 0 347534 species Zobellella denitrificans 1 980 0 0 5 469 order 1240482 1240483 family Orbaceae 1 1 5 469 0 316 2 3 0 1335631 1 Frischella genus species Frischella perrara 1267021 0 1 313 152 3 2 0 1193503 Gilliamella 1 genus 0 1 149 species Gilliamella apicola 1196095 1 Pasteurellales order 135625 0 18946 30 5 18941 29 155 0 712 Pasteurellaceae 1 family 724 genus 1 Haemophilus 6 29 10695 0 0 1 7673 species Haemophilus parainfluenzae 729 476 1 0 2609962 no rank 476 1 0 712310 Haemophilus sp. oral taxon 036 species 0 1 390 species [Haemophilus] ducreyi 730 species Haemophilus pittmaniae 249188 0 1 862 1 1265 0 727 species Haemophilus influenzae 0 15 4 1114 genus Mannheimia 1 75984 Mannheimia haemolytica species 75985 0 294 1 species Mannheimia varigena 85404 0 1 554 2645054 no rank 251 1 0 1 251 0 1432056 species Mannheimia sp. USDA-ARS-USMARC-1261 554 1 0 476528 genus 47735 Bibersteinia trehalosi species 554 1 0 745 Pasteurella 1 genus 1145 4 3 0 1 331 0 754 species Pasteurella dagmatis 0 1 810 species Pasteurella multocida 747 2094023 genus 819 1 0 0 819 1 Glaesserella parasuis species 738 1592 3 6 0 416916 1 Aggregatibacter genus 0 1 796 species Aggregatibacter aphrophilus 732 0 790 1 Aggregatibacter actinomycetemcomitans species 714 1816 8 5 0 713 Actinobacillus 1 genus species Actinobacillus pleuropneumoniae 715 0 1 686 1 383 0 716 species Actinobacillus suis species Actinobacillus equuli 718 0 1 337 0 402 1 Actinobacillus succinogenes species 67854 2 2 435 0 697331 genus 1 Basfia 157673 [Mannheimia] succiniciproducens species 433 1 0 155493 genus 278 1 0 750 species Gallibacterium anatis 1 278 0 214906 genus Histophilus 1 1 2 338 0 species Histophilus somni 731 0 1 337 0 6 19 3905 order 1 Legionellales 118969 444 1 Legionellaceae family 3625 6 14 0 genus 465 0 172 1 451 Tatlockia micdadei species 172 1 0 445 1 Legionella genus 3447 12 15 0 96230 species Legionella fallonii 1 302 0 1 259 0 28087 species Legionella sainthelensi 192 1 0 45067 Legionella lansingensis species 0 207 1 Legionella clemsonensis species 1867846 66969 Legionella waltersii species 304 1 0 Legionella hackeliae species 449 0 232 1 Legionella oakridgensis species 29423 0 176 1 0 1 1133 species Legionella pneumophila 446 Legionella longbeachae species 450 0 342 1 Legionella endosymbiont of Polyplax serrata species 2005262 0 73 1 Legionella spiritensis species 452 0 212 1 0 4 1 274 family 1 Coxiellaceae 118968 776 genus 183 2 0 no rank 2676648 0 48 1 1 48 0 325775 species Coxiella endosymbiont of Amblyomma americanum 0 1 135 species Coxiella burnetii 777 134284 no rank 1 90 0 1592897 species Coxiella-like endosymbiont 1 90 0 1692040 Acidiferrobacterales 1 order 1136 6 26 0 0 1110 5 28 1 Acidiferrobacteraceae family 1692041 534 2 7 0 1692042 Sulfurifustis 1 genus Sulfurifustis variabilis species 1675686 0 527 1 1744881 genus Sulfuricaulis 1 2 12 548 0 1620215 Sulfuricaulis limicola species 536 1 0 158539 672 242 0 91347 1 Enterobacterales order family 1 Pectobacteriaceae 1903410 0 20 69 11162 4444 6 140 0 122277 Pectobacterium 1 genus 554 Pectobacterium carotovorum species 1819 1 0 566 1 0 1905730 Pectobacterium parmentieri species Pectobacterium wasabiae species 55208 0 539 1 620 1 0 29471 Pectobacterium atrosepticum species 0 1 760 species Pectobacterium polaris 2042057 71655 1 Brenneria genus 557 6 2 0 species Brenneria goodwinii 1109412 0 1 551 0 6 150 4390 genus 1 Dickeya 204037 1 980 0 204042 species Dickeya zeae 1089444 Dickeya solani species 1449 1 0 species Dickeya dadantii 204038 0 1 588 Dickeya dianthicola species 204039 0 612 1 0 611 1 Dickeya fangzhongdai species 1778540 1702 5 28 0 84565 Sodalis 1 genus 55 1 0 1929246 Sodalis endosymbiont of Henestaris halophilus species 501 1 0 63612 Sodalis glossinidius species 0 1 597 species Sodalis praecaptivus 1239307 species Candidatus Sodalis pierantonius 1486991 0 1 521 1 Enterobacteriaceae family 543 0 88639 118 794 2941 12 5 0 1330547 1 Kosakonia genus 1158459 species Kosakonia sacchari 1 602 0 631 1 0 497725 Kosakonia oryzae species Kosakonia radicincitans species 283686 0 723 1 973 1 0 208223 Kosakonia cowanii species 2111 2 8 0 158483 Cedecea 1 genus 1 2103 0 158822 species Cedecea neteri Lelliottia 1 genus 1330545 0 2164 20 4 1907578 Lelliottia jeotgali species 571 1 0 1 1007 0 61646 species Lelliottia amnigena 0 566 1 Lelliottia nimipressuralis species 69220 0 4 82 2373 genus 1 Shigella 620 species Shigella flexneri 623 0 1 622 0 1 845 no rank 2629414 0 1 845 species Shigella sp. PAMC 28760 1813821 1 824 0 622 species Shigella dysenteriae 0 2 2 492 genus Kluyvera 1 579 0 490 1 Kluyvera intermedia species 61648 0 2329 3 18 Pluralibacter 1 genus 1330546 species Pluralibacter gergoviae 61647 0 1 1418 1334193 species [Enterobacter] lignolyticus 1 893 0 0 1 84 genus 401618 401619 species Candidatus Riesia pediculicola 1 84 0 10 524 15779 0 570 genus 1 Klebsiella 1 4421 0 573 species Klebsiella pneumoniae 0 1784 1 Klebsiella variicola species 244366 1463165 Klebsiella quasipneumoniae species 1015 1 0 0 1 2754 species Klebsiella oxytoca 571 2026240 Klebsiella quasivariicola species 876 1 0 0 1 1727 species Klebsiella michiganensis 1134687 Klebsiella aerogenes species 548 0 1096 1 0 2 1582 no rank 2608929 1905288 species Klebsiella sp. LTGPAF-6F 1 723 0 1934254 species Klebsiella sp. M5al 1 859 0 genus 1048757 0 44 1 0 44 1 Candidatus Moranella endobia species 1048758 2156 83 4 0 83654 1 Leclercia genus Leclercia adecarboxylata species 83655 0 555 1 no rank 2627398 0 2 1518 0 1 613 species Leclercia sp. LSNIH3 1920116 1920114 Leclercia sp. LSNIH1 species 905 1 0 103 3 2 0 409304 1 Candidatus Ishikawaella genus 0 1 100 species Candidatus Ishikawaella capsulata 168169 0 1 2 808 genus Shimwellia 1 1335483 563 Shimwellia blattae species 807 1 0 no rank 191675 0 1266 17 clade 84563 0 17 1266 146507 clade 333 4 0 genus Candidatus Hamiltonella 1 568987 0 6 2 93 138072 species Candidatus Hamiltonella defensa 1 87 0 0 1 89 species secondary endosymbiont of Heteropsylla cubana 134287 secondary endosymbiont of Ctenarytaina eucalypti species 1199245 0 151 1 genus 1906661 0 1 71 species Candidatus Gullanella endobia 1070130 0 1 71 0 58 1 genus 1906660 Candidatus Mikella endobia species 1778264 0 58 1 1906659 genus 1 93 0 1778263 species Candidatus Hoaglandella endobia 1 93 0 genus 1682492 0 172 1 1410383 species Candidatus Tachikawaea gelatinosa 1 172 0 404 7 0 84564 clade 404 1 7 0 203804 1 Candidatus Blochmannia genus 61 1 0 203907 Candidatus Blochmannia floridanus species 143 2 0 711328 no rank 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri species 50 1 0 1505597 species Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1 93 0 251535 Candidatus Blochmannia vafer species 52 1 0 species Candidatus Blochmannia chromaiodes 251542 0 1 68 1 79 0 101534 species Candidatus Blochmannia pennsylvanicus 0 96 1 genus 1906657 96 1 0 1778262 Candidatus Doolittlea endobia species 199891 clade 39 1 0 39 1 0 1835721 secondary endosymbiont of Trabutina mannipara species Enterobacter 1 genus 547 0 16252 22 971 12 11494 0 354276 species group 61645 species Enterobacter asburiae 1 1327 0 species Enterobacter ludwigii 299767 0 1 527 Enterobacter kobei species 208224 0 390 1 1812935 Enterobacter cloacae complex 'Hoffmann cluster IV' species 333 1 0 69218 Enterobacter cancerogenus species 624 1 0 0 4328 1 Enterobacter cloacae species 550 0 2681 1592 3 1 Enterobacter hormaechei species 158836 504 1 0 1296536 Enterobacter xiangfangensis subspecies subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 1812934 0 1 585 3 1284 0 2757714 no rank Enterobacter cloacae complex bacterium species 2027919 0 398 1 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 2077137 0 1 466 species Enterobacter cloacae complex sp. ECNIH7 1915310 0 1 420 3787 9 0 2608935 no rank Enterobacter sp. E20 species 1560339 0 227 1 1914861 species Enterobacter sp. SA187 1 592 0 species Enterobacter sp. ODB01 1827481 0 1 445 Enterobacter sp. R4-368 species 1166130 0 588 1 443 1 0 399742 Enterobacter sp. 638 species 0 1 525 species Enterobacter sp. FY-07 1692238 1977566 species Enterobacter sp. Crenshaw 1 230 0 0 1 505 species Enterobacter sp. CRENT-193 2051905 0 1 232 species Enterobacter sp. HK169 1868135 genus Citrobacter 1 544 0 300 14 11706 67824 species Citrobacter farmeri 1 543 0 species group 1344959 0 7 6317 Citrobacter freundii species 546 0 2277 1 0 1139 1 Citrobacter werkmanii species 67827 596 1 0 2066049 Citrobacter freundii complex sp. CFNIH2 species 2077147 Citrobacter freundii complex sp. CFNIH3 species 540 1 0 2077149 species Citrobacter freundii complex sp. CFNIH9 1 361 0 species Citrobacter braakii 57706 0 1 989 0 1 415 species Citrobacter freundii complex sp. CFNIH4 2077148 0 1087 2 no rank 2644389 0 1 546 species Citrobacter sp. CFNIH10 1920110 1702170 Citrobacter sp. FDAARGOS_156 species 541 1 0 0 724 1 Citrobacter koseri species 545 0 1 1015 species Citrobacter rodentium 67825 1720 1 0 35703 Citrobacter amalonaticus species 590 Salmonella 1 genus 4566 3 18 0 54736 species Salmonella bongori 1 553 0 species Salmonella enterica 28901 0 1 3995 413496 1 Cronobacter genus 4525 8 109 0 535744 species Cronobacter universalis 1 493 0 1 641 0 413497 species Cronobacter dublinensis 413503 Cronobacter malonaticus species 515 1 0 1163710 Cronobacter condimenti species 431 1 0 0 1 747 species Cronobacter muytjensii 413501 0 1 528 species Cronobacter turicensis 413502 28141 species Cronobacter sakazakii 1 1061 0 0 3 24 2785 genus Raoultella 1 160674 758 1 0 575 Raoultella planticola species 54291 species Raoultella ornithinolytica 1 2003 0 no rank 36866 0 5 2926 Enterobacteriaceae bacterium ENNIH2 species 1920109 0 481 1 503 1 0 693444 Enterobacteriaceae bacterium strain FGI 57 species 1920128 species Enterobacteriaceae bacterium ENNIH3 1 690 0 species Enterobacteriaceae bacterium ENNIH1 2066051 0 1 639 Plautia stali symbiont species 891974 0 613 1 genus Escherichia 1 561 0 90 5 12435 10368 1 0 562 Escherichia coli species 564 Escherichia fergusonii species 500 1 0 species Escherichia albertii 208962 0 1 972 1 505 0 1499973 species Escherichia marmotae Yersiniaceae 1 family 1903411 0 27336 128 38 genus 929812 0 815 1 0 1 815 species Gibbsiella quercinecans 929813 0 13 123 6577 genus Yersinia 1 629 0 352 1 no rank 2653513 species Yersinia sp. FDAARGOS_228 1839800 0 1 352 263819 Yersinia aleksiciae species 385 1 0 0 498 1 Yersinia ruckeri species 29486 3 988 0 1649845 species group 633 species Yersinia pseudotuberculosis 1 480 0 316 1 0 632 Yersinia pestis species 367190 Yersinia similis species 192 1 0 0 1 1319 species Yersinia frederiksenii 29484 species Yersinia rohdei 29485 0 1 258 species Yersinia kristensenii 28152 0 1 409 1 351 0 29483 species Yersinia aldovae 357 1 0 631 Yersinia intermedia species 1 1537 0 630 species Yersinia enterocolitica Chania 1 genus 1745211 0 612 2 2 Chania multitudinisentens species 1639108 0 610 1 1565532 Rouxiella genus 11 1 0 1973 30 4 0 34037 Rahnella 1 genus 0 2 1387 no rank 2635087 1805933 species Rouxiella sp. ERMR1:05 1 856 0 1 531 0 741091 species Rahnella sp. Y9602 34038 Rahnella aquatilis species 556 1 0 17220 749 16 0 613 1 Serratia genus 1606 1 0 47917 Serratia fonticola species 0 4234 1 Serratia marcescens species 615 0 8 5702 no rank 2647522 1327989 Serratia sp. FS14 species 932 1 0 436 1 0 104623 Serratia sp. ATCC 39006 species 0 733 1 Serratia sp. FGI94 species 671990 845 1 0 2033438 Serratia sp. MYb239 species 1 497 0 768490 species Serratia sp. AS12 1015 1 0 1758196 Serratia sp. SSNIH1 species Serratia sp. SCBI species 488142 0 747 1 0 497 1 Serratia sp. AS13 species 768493 614 species Serratia liquefaciens 1 812 0 61652 species Serratia rubidaea 1 890 0 species Serratia proteamaculans 28151 0 1 521 species Serratia ficaria 61651 0 1 956 1 1750 0 82996 species Serratia plymuthica 7574 40 14 0 1903412 1 Hafniaceae family 41 3 1646 0 568 genus Hafnia 1 569 species Hafnia alvei 1 1149 0 1 456 0 2621980 no rank 1848580 species Hafnia sp. CBA7124 1 456 0 409 8 2 0 82982 Obesumbacterium 1 genus species Obesumbacterium proteus 82983 0 1 401 0 252 8 5479 genus 1 Edwardsiella 635 572 1 0 67780 Edwardsiella ictaluri species 571 1 0 1821960 Edwardsiella anguillarum species 1263550 Edwardsiella piscicida species 752 1 0 no rank 2676541 0 1312 2 1650654 Edwardsiella sp. LADL05-105 species 547 1 0 species Edwardsiella sp. EA181011 1578828 0 1 765 636 Edwardsiella tarda species 1454 1 0 0 1 566 species Edwardsiella hoshinae 93378 0 26 41 14578 family 1 Erwiniaceae 1903409 132 1 0 51228 genus 0 1 132 species Wigglesworthia glossinidia 51229 1203 1 0 32199 genus 1203 1 0 9 Buchnera aphidicola species 2 10 334 0 82986 genus Tatumella 1 53336 Tatumella citrea species 324 1 0 106 8 3505 0 551 genus 1 Erwinia 1922217 species Candidatus Erwinia sp. ErCipseudotaxifoliae 1 179 0 no rank 2622719 0 446 1 0 1 446 species Erwinia sp. Ejp617 215689 735 1 0 1619313 Erwinia gerundensis species 0 1 873 species Erwinia billingiae 182337 1 437 0 79967 species Erwinia pyrifoliae 403 1 0 552 Erwinia amylovora species 326 1 0 338565 Erwinia tasmaniensis species 0 7864 334 11 1 Pantoea genus 53335 species Pantoea alhagi 1891675 0 1 719 0 714 1 Pantoea ananatis species 553 0 130 1 Candidatus Pantoea carbekii species 1235990 no rank 2630326 0 3 2264 species Pantoea sp. PSNIH2 1484157 0 1 774 741 1 0 1484158 Pantoea sp. PSNIH1 species 0 1 749 species Pantoea sp. At-9b 592316 470934 Pantoea vagans species 1395 1 0 0 473 1 Pantoea rwandensis species 1076550 species group 1654067 0 1 1279 Pantoea agglomerans species 549 0 1279 1 0 1 556 species Pantoea stewartii 66269 2100764 genus 2 1499 0 744 1 0 665913 Pantoea calida species 0 755 1 Pantoea gaviniae species 665914 0 35 22 7238 family 1 Morganellaceae 1903414 637 genus 1 Arsenophonus 2 3 71 0 0 68 1 Arsenophonus symbiont of Lipoptena fortisetosa species 634113 0 1311 12 3 1 Proteus genus 583 584 species Proteus mirabilis 1 936 0 585 Proteus vulgaris species 363 1 0 1154 24 2 0 581 Morganella 1 genus 582 Morganella morganii species 1130 1 0 0 4 22 1333 genus Photorhabdus 1 29487 291112 Photorhabdus asymbiotica species 465 1 0 574560 species Photorhabdus temperata 1 509 0 Photorhabdus luminescens species 29488 0 337 1 0 1286 9 4 1 Providencia genus 586 0 1 321 species Providencia alcalifaciens 126385 Providencia rettgeri species 587 0 460 1 496 1 0 588 Providencia stuartii species 626 genus 1 Xenorhabdus 11 6 2048 0 40577 species Xenorhabdus poinarii 1 280 0 351679 Xenorhabdus hominickii species 154 1 0 1 412 0 628 species Xenorhabdus nematophila 40576 Xenorhabdus bovienii species 833 1 0 0 1 358 species Xenorhabdus doucetiae 351671 0 308 1 family 1903416 1 308 0 82984 genus 82985 Pragia fontium species 308 1 0 1032 2 0 451511 no rank 1 Plesiomonas genus 702 0 1032 2 16 0 1 1016 species Plesiomonas shigelloides 703 802 4 10 0 1934945 Immundisolibacterales 1 order family Immundisolibacteraceae 1 1934946 0 17 3 792 0 2 2 775 genus Immundisolibacter 1 1934947 1 773 0 1810504 species Immundisolibacter cernigliae 72273 order Thiotrichales 1 32 6 7365 0 34064 family 1 Francisellaceae 14 1 4497 0 0 1 249 genus 1869285 Allofrancisella guangzhouensis species 594679 0 249 1 0 4247 76 12 Francisella 1 genus 262 1 278 0 1542390 species Francisella sp. CA97-1460 0 1 217 species Francisella hispaniensis 622488 415 1 0 657445 Francisella noatunensis species 0 440 2 no rank 2610885 182 1 0 475375 Francisella sp. MA067296 species 1547445 Francisella sp. FSC1006 species 258 1 0 species Francisella tularensis 263 0 1 969 0 1 355 species Francisella sp. TX077310 573570 0 1 201 species Francisella sp. TX077308 573569 Francisella philomiragia species 28110 0 806 1 0 1 303 species Francisella halioticida 549298 954 Francisella persica species 187 1 0 0 3 493 family 135617 124 2 2 0 40751 Thioploca 1 genus 0 1 122 species Thioploca ingrica 40754 369 1 0 1021 genus 0 369 1 Beggiatoa leptomitoformis species 288004 135616 family Piscirickettsiaceae 1 11 14 2369 0 2 339 0 933 genus 0 215 1 Thiomicrospira cyclica species 147268 species Thiomicrospira aerophila 92245 0 1 124 28884 Hydrogenovibrio 1 genus 200 2 7 0 species Hydrogenovibrio crunogenus 39765 0 1 193 1237 genus Piscirickettsia 1 1 2 372 0 0 371 1 Piscirickettsia salmonis species 1238 0 901 6 4 1 Cycloclasticus genus 34067 306 1 0 1329899 Cycloclasticus zancles species no rank 2621467 0 2 589 Cycloclasticus sp. P1 species 385025 0 307 1 0 282 1 Cycloclasticus sp. PY97N species 728003 genus Methylophaga 1 40222 0 3 3 546 1 167 0 754477 species Methylophaga frappieri 0 1 376 species Methylophaga nitratireducenticrescens 754476 135613 order 1 Chromatiales 51 231 15931 0 0 6194 18 88 Ectothiorhodospiraceae 1 family 72276 1335745 Spiribacter 1 genus 604 3 4 0 1335757 Spiribacter curvatus species 332 1 0 1335746 Spiribacter salinus species 268 1 0 0 2 2 566 genus Halorhodospira 1 85108 0 564 1 Halorhodospira halophila species 1053 595 6 2 0 1051 Ectothiorhodospira 1 genus 589 1 0 2684909 no rank 0 1 589 species Ectothiorhodospira sp. BSL-9 1442136 genus 1 Alkalilimnicola 133193 0 2 5 853 1 848 0 351052 species Alkalilimnicola ehrlichii 0 3025 6 79 Thioalkalivibrio 1 genus 106633 Thioalkalivibrio versutus species 106634 0 631 1 0 1 420 no rank 2621013 396595 species Thioalkalivibrio sp. K90mix 1 420 0 1 874 0 1033854 species Thioalkalivibrio sulfidiphilus 0 1 516 species Thioalkalivibrio paradoxus 108010 505 1 0 186931 Thioalkalivibrio nitratireducens species genus Acidihalobacter 1 1765964 0 8 2 463 0 455 1 Acidihalobacter prosperus species 160660 0 534 15 3 Wenzhouxiangellaceae 1 family 1676141 8 2 519 0 1676142 genus Wenzhouxiangella 1 511 1 0 1579979 Wenzhouxiangella marina species 0 2 836 no rank 451214 7 2 836 0 1273155 genus 1 Thiohalobacter 585455 Thiohalobacter thiocyanaticus species 829 1 0 family 1 Chromatiaceae 1046 0 110 17 6112 1 Nitrosococcus genus 1227 0 763 4 6 0 1 216 species Nitrosococcus watsonii 473531 0 292 1 Nitrosococcus halophilus species 133539 0 1 249 species Nitrosococcus oceani 1229 694 2 1 0 85072 Allochromatium 1 genus 0 1 693 species Allochromatium vinosum 1049 82569 no rank 1 649 0 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a species 649 1 0 733 2 6 0 13724 Thiocystis 1 genus 1 727 0 73141 species Thiocystis violascens 0 1 89 genus 1980513 1 89 0 1630141 species Candidatus Nitrosoglobus terrae 85076 genus 1 Marichromatium 2 10 872 0 1 862 0 37487 species Marichromatium purpuratum 156885 1 Thioflavicoccus genus 702 2 2 0 Thioflavicoccus mobilis species 80679 0 700 1 1500 2 5 0 53392 Thiodictyon 1 genus 1 1495 0 1166950 species Candidatus Thiodictyon syntrophicum family 1 Halothiobacillaceae 255526 0 15 4 795 109262 genus Halothiobacillus 1 11 3 780 0 1 382 0 927 species Halothiobacillus neapolitanus 0 387 1 no rank 2636392 1860122 Halothiobacillus sp. LS2 species 387 1 0 0 822 2 3 Granulosicoccaceae 1 family 449719 0 820 9 2 Granulosicoccus 1 genus 437504 0 811 1 Granulosicoccus antarcticus species 437505 0 1 3 407 family 1 Woeseiaceae 1738654 0 406 2 5 1 Woeseia genus 1738655 1548547 Woeseia oceani species 401 1 0 2498710 clade 4 211 0 phylum 67814 0 4 211 class 693071 0 211 4 693072 order Caldisericales 1 1 4 211 0 210 3 1 0 693073 1 Caldisericaceae family 1 2 209 0 693074 genus Caldisericum 1 Caldisericum exile species 693075 0 208 1 phylum 200918 0 8293 42 0 8293 3 42 Thermotogae 1 class 188708 0 2 28 5724 order 1 Thermotogales 2419 family 1 Fervidobacteriaceae 1643950 0 2 10 2264 2420 genus Thermosipho 1 2 5 1257 0 614 2 0 2676525 no rank 306 1 0 1462747 Thermosipho sp. 1063 species 1437364 species Thermosipho sp. 1070 1 308 0 2421 Thermosipho africanus species 396 1 0 0 245 1 Thermosipho melanesiensis species 46541 1005 4 10 0 2422 1 Fervidobacterium genus 0 248 1 Fervidobacterium islandicum species 2423 1 231 0 2424 species Fervidobacterium nodosum Fervidobacterium pennivorans species 93466 0 516 1 1 Thermotogaceae family 188709 0 3458 5 17 1643951 1 Pseudothermotoga genus 840 5 21 0 0 243 1 Pseudothermotoga hypogea species 57487 Pseudothermotoga elfii species 38322 0 219 1 119394 species Pseudothermotoga thermarum 1 150 0 177758 species Pseudothermotoga lettingae 1 207 0 2613 32 11 0 2335 1 Thermotoga genus 0 1 383 species Thermotoga neapolitana 2337 4 983 0 2631113 no rank 0 1 161 species Thermotoga sp. Cell2 1157947 Thermotoga sp. RQ7 species 126738 0 368 1 164 1 0 126740 Thermotoga sp. RQ2 species 1157948 Thermotoga sp. 2812B species 290 1 0 376 1 0 2336 Thermotoga maritima species 93929 species Thermotoga petrophila 1 204 0 1508419 species Thermotoga caldifontis 1 184 0 Thermotoga profunda species 1508420 0 196 1 1 255 0 93930 species Thermotoga naphthophila 0 1758 8 3 1 Petrotogales order 1643947 1643949 family 1755 7 0 0 2 2 257 genus Petrotoga 1 28236 0 255 1 Petrotoga mobilis species 69499 1511648 1 Defluviitoga genus 335 1 2 0 species Defluviitoga tunisiensis 1006576 0 1 334 0 3 4 1163 genus 1 Marinitoga 160798 0 1 574 species Marinitoga piezophila 149715 1 585 0 2640159 no rank 1545835 Marinitoga sp. 1137 species 585 1 0 808 5 2 0 1643946 Kosmotogales 1 order 1643948 family 806 4 0 1 294 0 1184396 genus 1184387 Mesotoga prima species 294 1 0 0 512 3 1 1 Kosmotoga genus 651456 Kosmotoga pacifica species 1330330 0 272 1 0 239 1 Kosmotoga olearia species 651457 17794 24 0 32066 phylum 0 17794 24 6 Fusobacteriia 1 class 203490 17788 13 23 0 203491 1 Fusobacteriales order 0 12575 12 25 1 Fusobacteriaceae family 203492 0 9 44 11829 genus Fusobacterium 1 848 Fusobacterium gonidiaformans species 849 0 599 1 Fusobacterium varium species 856 0 1656 1 Fusobacterium necrophorum species 859 0 601 1 0 1 2488 species Fusobacterium periodonticum 860 0 1 1043 species Fusobacterium ulcerans 861 0 1 3744 species Fusobacterium nucleatum 851 1583098 Fusobacterium hwasookii species 895 1 0 0 1 759 species Fusobacterium mortiferum 850 1 Ilyobacter genus 167639 0 721 2 2 0 719 1 Ilyobacter polytropus species 167642 0 5200 2 10 Leptotrichiaceae 1 family 1129771 573 2 2 0 168808 Sneathia 1 genus 571 1 0 187101 Sneathia amnii species 32068 genus 1064 1 0 Sebaldella termitidis species 826 0 1064 1 0 5 6 2894 genus 1 Leptotrichia 32067 Leptotrichia buccalis species 40542 0 760 1 0 3 2128 no rank 2633022 0 942 1 Leptotrichia sp. oral taxon 212 species 712357 0 1 654 species Leptotrichia sp. oral taxon 847 1785996 712368 Leptotrichia sp. oral taxon 498 species 532 1 0 0 1 667 genus 34104 34105 species Streptobacillus moniliformis 1 667 0 2351 14 0 40117 phylum 2351 14 14 0 203693 Nitrospira 1 class 0 2337 13 30 1 Nitrospirales order 189778 0 12 12 2307 family 1 Nitrospiraceae 189779 0 1508 43 5 Nitrospira 1 genus 1234 species Nitrospira japonica 1325564 0 1 275 1 445 0 42253 species Nitrospira moscoviensis species Candidatus Nitrospira inopinata 1715989 0 1 353 392 1 0 330214 Nitrospira defluvii species 0 1 2 244 genus 1 Thermodesulfovibrio 28261 28262 Thermodesulfovibrio yellowstonii species 243 1 0 4 7 543 0 179 genus Leptospirillum 1 species group 261386 0 231 1 0 1 231 species Leptospirillum ferriphilum 178606 180 1 0 261385 species group Leptospirillum sp. Group II 'CF-1' species 1660083 0 180 1 species group 655606 0 125 1 180 Leptospirillum ferrooxidans species 125 1 0 phylum 203691 0 55 23673 1 Spirochaetia class 203692 0 23673 55 48 order 1 Brachyspirales 1643686 0 7 3 3976 0 11 6 3973 family 1 Brachyspiraceae 143786 29521 Brachyspira 1 genus 3962 5 11 0 0 995 1 Brachyspira hyodysenteriae species 159 0 674 1 Brachyspira murdochii species 84378 Brachyspira intermedia species 84377 0 909 1 52584 Brachyspira pilosicoli species 1373 1 0 order 1643688 0 2638 8 170 family 1 Leptospiraceae 8 8 2638 0 genus 1 Leptospira 171 0 6 6 2189 1 234 0 172 species Leptospira biflexa 28183 species Leptospira santarosai 1 328 0 1 904 0 173 species Leptospira interrogans 0 1 392 species Leptospira borgpetersenii 174 1 325 0 28452 species Leptospira alstonii 338321 genus 441 1 0 Turneriella parva species 29510 0 441 1 17011 407 39 0 136 Spirochaetales 1 order 0 14178 22 87 1 Spirochaetaceae family 137 1 Spirochaeta genus 146 0 1860 3 8 154 Spirochaeta thermophila species 911 1 0 0 941 1 Spirochaeta africana species 46355 genus 1616789 0 1 596 1 596 0 1307761 species Salinispira pacifica 0 8662 16 12 1 Treponema genus 157 1 156 0 53435 species Treponema paraluiscuniculi 0 489 1 Treponema caldarium species 215591 1 671 0 88058 species Treponema primitia Treponema succinifaciens species 167 0 1908 1 150829 species Treponema azotonutricium 1 781 0 0 1 454 species Treponema pedis 409322 621 1 0 158 Treponema denticola species 221027 species Treponema putidum 1 1179 0 0 1160 1 Treponema brennaborense species 81028 1087 1 0 2638727 no rank 1087 1 0 1539298 Treponema sp. OMZ 838 species species Treponema pallidum 160 0 1 140 genus 1911556 0 958 1 55206 Sediminispirochaeta smaragdinae species 958 1 0 Sphaerochaeta 1 genus 399320 0 2015 4 8 273376 species Sphaerochaeta coccoides 1 513 0 0 844 1 Sphaerochaeta globosa species 1131703 0 1 650 species Sphaerochaeta pleomorpha 1131707 0 16 2426 family 1643685 1 Borrelia genus 138 0 1309 10 8 0 1 356 species Borrelia miyamotoi 47466 0 1 165 species Borrelia turicatae 142 140 Borrelia hermsii species 172 1 0 Borrelia recurrentis species 44449 0 167 1 175 1 0 40834 Borrelia duttonii species species Borrelia anserina 143 0 1 136 141 Borrelia parkeri species 128 1 0 64895 genus Borreliella 1 8 30 1117 0 194 1 0 1674146 Borrelia mayonii species 1 90 0 29518 species Borreliella afzelii 664662 Borreliella bavariensis species 125 1 0 1 184 0 64897 species Borreliella bissettii 1 167 0 139 species Borreliella burgdorferi Borreliella valaisiana species 62088 0 58 1 29519 species Borreliella garinii 1 269 0 phylum 200940 0 7 862 1 Thermodesulfobacteria class 67799 0 862 7 1 188710 order 6 861 0 861 2 6 0 188711 1 Thermodesulfobacteriaceae family 420 2 3 0 1740 1 Thermodesulfobacterium genus 0 1 269 species Thermodesulfobacterium geofontis 1295609 1 149 0 1741 species Thermodesulfobacterium commune 0 1 216 genus 241192 Thermodesulfatator indicus species 171695 0 216 1 genus 444090 0 223 1 0 1 223 species Caldimicrobium thiodismutans 1653476 0 24449 88 clade 1783257 0 3 3093 phylum 256845 1313211 1 Lentisphaeria class 3093 7 3 0 Victivallales 1 order 278082 0 3086 656 2 1674876 no rank 1 2430 0 1 2430 0 2094242 species Victivallales bacterium CCUG 44730 203682 1 Planctomycetes phylum 9637 4 36 0 0 30 25 7399 class 1 Planctomycetia 203683 7 2258 0 2691356 order 12 7 2258 0 1763524 family Isosphaeraceae 1 0 789 2 2 Paludisphaera 1 genus 1763521 Paludisphaera borealis species 1387353 0 787 1 0 11 2 809 genus Isosphaera 1 127 128 Isosphaera pallida species 798 1 0 648 2 1 0 466152 1 Singulisphaera genus 0 1 647 species Singulisphaera acidiphila 466153 0 3 564 order 2691355 1 Gemmataceae family 1914233 0 564 1 3 0 2 2 563 genus 1 Gemmata 113 0 1 561 no rank 2622970 1 561 0 1630693 species Gemmata sp. SH-PL17 order 2691354 0 1114 5 1 440 0 2691358 family 1 440 0 1676125 genus 1 440 0 1331910 species Thermogutta terrifontis 674 4 0 2691357 family 0 280 4 2 1 Rhodopirellula genus 265488 Rhodopirellula baltica species 265606 0 276 1 123 genus 1 Pirellula 7 2 394 0 125 species Pirellula staleyi 1 387 0 3433 103 9 0 112 1 Planctomycetales order 3330 8 15 0 126 1 Planctomycetaceae family 1 379 0 1649490 genus 119 Rubinisphaera brasiliensis species 379 1 0 genus 1 Planctomyces 118 0 9 3 1679 0 2 1670 no rank 2648843 1636152 species Planctomyces sp. SH-PL62 1 1032 0 species Planctomyces sp. SH-PL14 1632864 0 1 638 2 2 755 0 1936111 genus 1 Fuerstia 0 753 1 Fuerstia marisgermanicae species 1891926 0 1 502 genus 1649480 1 502 0 120 species Planctopirus limnophila 666505 class Phycisphaerae 1 10 7 1722 0 953 2 0 2483366 order 2483367 family 2 953 0 2483368 genus 953 2 0 1940790 Phycisphaerae bacterium L21-RPul-D3 species 537 1 0 Phycisphaerae bacterium ST-PulAB-D4 species 1941349 0 416 1 666506 order 1 Phycisphaerales 4 22 759 0 Phycisphaeraceae 1 family 666507 0 737 8 3 1 Phycisphaera genus 666508 0 729 2 2 547188 Phycisphaera mikurensis species 727 1 0 0 3 512 class 2517206 1127829 Candidatus Brocadiales 1 order 512 4 3 0 1127830 family 2 508 0 1 Candidatus Kuenenia genus 380738 0 508 2 2 174633 Candidatus Kuenenia stuttgartiensis species 506 1 0 5 27 9409 0 74201 phylum 1 Verrucomicrobia 0 3785 27 12 Opitutae 1 class 414999 1 Opitutales order 415000 0 3429 32 7 Opitutaceae 1 family 134623 0 3397 43 6 1080 4 2 0 178440 Opitutus 1 genus 1 1076 0 107709 species Opitutus terrae genus 1 Lacunisphaera 1961799 0 18 2 1024 1838286 species Lacunisphaera limnophila 1 1006 0 1 1250 0 278955 no rank 794903 Opitutaceae bacterium TAV5 species 1250 1 0 415001 order Puniceicoccales 1 4 4 329 0 family 1 Puniceicoccaceae 415002 0 3 2 325 0 323 19 2 Coraliomargarita 1 genus 442430 species Coraliomargarita akajimensis 395922 0 1 304 1448 2 0 417295 no rank 1 693 0 1637999 species Verrucomicrobia bacterium IMCC26134 1 755 0 2026799 species Verrucomicrobia bacterium 75 2 0 134549 class Candidatus Xiphinematobacter 1 genus 134550 0 75 2 1 no rank 2648876 0 1 74 1704307 Candidatus Xiphinematobacter sp. Idaho Grape species 74 1 0 class Verrucomicrobiae 1 203494 0 7 6 3885 0 3878 5 19 1 Verrucomicrobiales order 48461 Akkermansiaceae 1 family 1647988 0 3859 3 4 genus 1 Akkermansia 239934 0 3 3 3856 1 2862 0 239935 species Akkermansia muciniphila 1 991 0 1679444 species Akkermansia glycaniphila 1955630 class 4 211 0 717963 order 1 Methylacidiphilales 6 4 211 0 3 205 0 717964 family 3 3 205 0 511745 genus Methylacidiphilum 1 Methylacidiphilum fumariolicum species 591154 0 103 1 0 99 1 Methylacidiphilum infernorum species 511746 0 4 783 phylum 134625 1921781 class Kiritimatiellae 1 4 1 783 0 0 782 3 6 1 Kiritimatiellales order 1921782 0 776 2 family 1921783 1921784 1 Kiritimatiella genus 776 2 16 0 760 1 0 1307763 Kiritimatiella glycovorans species 204428 phylum 1527 18 0 class 204429 0 1527 18 981 13 0 51291 order 1 13 981 0 809 family Chlamydiaceae 1 12 980 0 1113537 no rank 980 12 8 0 810 1 Chlamydia genus 0 115 1 Chlamydia felis species 83556 1 62 0 1457141 species Chlamydia avium 0 1 63 species Chlamydia psittaci 83554 0 1 57 species Chlamydia pneumoniae 83558 Chlamydia abortus species 83555 0 99 1 124 1 0 1457153 Chlamydia gallinacea species 0 81 1 Chlamydia muridarum species 83560 0 1 212 species Chlamydia pecorum 85991 species Chlamydia suis 83559 0 1 72 Chlamydia caviae species 83557 0 50 1 813 Chlamydia trachomatis species 37 1 0 0 5 546 order 1963360 92712 family 58 1 0 genus 34093 0 1 58 83561 species Simkania negevensis 1 58 0 1 103 0 92714 family 1 103 0 71666 genus 0 103 1 Waddlia chondrophila species 71667 family 92713 0 385 3 0 1 2 224 genus 1 Candidatus Protochlamydia 282132 species Candidatus Protochlamydia naegleriophila 389348 0 1 223 83551 genus 1 161 0 83552 Parachlamydia acanthamoebae species 161 1 0 200783 phylum 24 2990 0 187857 class 2990 24 0 0 1 5 820 order Desulfurobacteriales 1 1485951 819 1 4 0 558314 1 Desulfurobacteriaceae family 0 263 1 genus 64159 0 263 1 Desulfurobacterium thermolithotrophum species 64160 genus 1 Thermovibrio 171868 0 2 2 555 species Thermovibrio ammonificans 228745 0 1 553 1 Aquificales order 32069 0 2170 2 19 0 11 1 1188 family 1 Aquificaceae 64898 0 562 36 6 1 Hydrogenobaculum genus 168657 5 526 0 2622382 no rank 0 106 1 Hydrogenobaculum sp. 3684 species 547143 0 106 1 Hydrogenobaculum sp. SN species 547146 0 106 1 Hydrogenobaculum sp. HO species 547144 species Hydrogenobaculum sp. SHO 547145 0 1 106 380749 Hydrogenobaculum sp. Y04AAS1 species 102 1 0 75905 genus 2 275 0 Thermocrinis albus species 136094 0 174 1 0 101 1 Thermocrinis ruber species 75906 2713 genus 1 188 0 63363 Aquifex aeolicus species 188 1 0 939 genus 1 162 0 162 1 0 940 Hydrogenobacter thermophilus species 0 2 161 no rank 90150 genus Thermosulfidibacter 1 412592 0 2 1 161 0 1 160 species Thermosulfidibacter takaii 412593 family 1 Hydrogenothermaceae 224027 0 1 5 819 Persephonella 1 genus 182899 0 344 2 1 1 343 0 309805 species Persephonella marina 2 474 0 212790 genus 0 1 196 species Sulfurihydrogenibium azorense 309806 0 278 1 no rank 2619248 species Sulfurihydrogenibium sp. YO3AOP1 436114 0 1 278 0 5 1083 phylum 200938 18 5 1083 0 118001 class Chrysiogenetes 1 189769 order Chrysiogenales 1 17 4 1065 0 Chrysiogenaceae 1 family 189770 0 1048 4 3 0 1044 14 2 1 Desulfurispirillum genus 393029 Desulfurispirillum indicum species 936456 0 1030 1 phylum 68297 0 833 4 4 1 833 0 203486 class Dictyoglomia 1 Dictyoglomales 1 order 203487 0 832 5 3 family 203488 0 827 2 827 2 0 13 genus 1 462 0 513050 species Dictyoglomus turgidum 0 1 365 species Dictyoglomus thermophilum 14 phylum 74152 0 811 6 99260 no rank 1 144 0 167965 uncultured Termite group 1 bacterium species 144 1 0 5 3 206 0 641853 class Elusimicrobia 1 201 2 2 0 641854 1 Elusimicrobiales order 0 1 199 family 641876 genus 423604 0 1 199 Elusimicrobium minutum species 423605 0 199 1 0 2 461 class 447830 0 461 2 order 1783344 2 461 0 1783343 family 1408194 genus 461 2 0 1 312 0 1408281 species Endomicrobium proavitum 1 149 0 1408204 species Candidatus Endomicrobium trichonymphae 0 2992 12 phylum 508458 649775 class Synergistia 1 12 22 2992 0 0 2970 11 15 1 Synergistales order 649776 family 1 Synergistaceae 649777 0 10 18 2955 81461 genus Thermanaerovibrio 1 2 1 463 0 462 1 0 81462 Thermanaerovibrio acidaminovorans species 0 1 2 1812 genus Cloacibacillus 1 508459 Cloacibacillus porcorum species 1197717 0 1811 1 1 2 273 0 49894 genus 1 Acetomicrobium 97477 Acetomicrobium mobile species 272 1 0 genus 1 Aminobacterium 81466 0 2 2 260 species Aminobacterium colombiense 81468 0 1 258 0 1 129 genus 336260 129 1 0 336261 Thermovirga lienii species 0 363 1454758 clade 1783270 phylum 142182 0 2678 8 class Gemmatimonadetes 1 219685 0 8 8 2678 2670 7 126 0 219686 Gemmatimonadales 1 order family Gemmatimonadaceae 1 219687 0 6 32 2544 1706036 Gemmatirosa 1 genus 1118 2 16 0 species Gemmatirosa kalamazoonesis 861299 0 1 1102 0 41 3 1394 genus Gemmatimonas 1 173479 Gemmatimonas phototrophica species 1379270 0 634 1 0 719 1 Gemmatimonas aurantiaca species 173480 456828 phylum 999 2 0 2 2 999 0 456826 genus 1 Candidatus Cloacimonas 997 1 0 456827 Candidatus Cloacimonas acidaminovorans species phylum 65842 0 1362 5 204430 class 1 Fibrobacteria 14 5 1362 0 12 4 1348 0 218872 order 1 Fibrobacterales 1 Fibrobacteraceae family 204431 0 1336 5 3 1 Fibrobacter genus 832 0 1331 2 2 1 1329 0 833 species Fibrobacter succinogenes clade 68336 0 1449719 348 976 1 Bacteroidetes phylum 1439335 13 320 0 order Bacteroidetes Order II. Incertae sedis 1 1100069 0 7 43 3563 Rhodothermaceae 1 family 563843 0 3520 6 19 0 1291 1 no rank 1196022 Rhodothermaceae bacterium RA species 1779382 0 1291 1 Salinibacter 1 genus 146918 0 721 2 3 718 1 0 146919 Salinibacter ruber species 1 Rhodothermus genus 29548 0 1489 32 2 0 1457 1 Rhodothermus marinus species 29549 117747 1 Sphingobacteriia class 15458 6 23 0 200666 order Sphingobacteriales 1 22 5 15452 0 84566 Sphingobacteriaceae 1 family 15447 21 29 0 0 1 1006 genus 929509 species Solitalea canadensis 995 0 1 1006 84567 genus Pedobacter 1 6 13 4622 0 906 1 0 188932 Pedobacter cryoconitis species no rank 2628915 0 829 1 1727164 species Pedobacter sp. PACM 27299 1 829 0 363852 Pedobacter ginsengisoli species 918 1 0 1 1008 0 430522 species Pedobacter steynii 0 1 948 species Pedobacter heparinus 984 28453 1 Sphingobacterium genus 4704 8 6 0 4 3847 0 2609468 no rank 1207 1 0 1933220 Sphingobacterium sp. B29 species 867 1 0 743722 Sphingobacterium sp. 21 species 2003121 Sphingobacterium sp. G1-14 species 1018 1 0 0 755 1 Sphingobacterium sp. ML3W species 1538644 1010 Sphingobacterium mizutaii species 849 1 0 1 2 791 0 1649482 genus Pseudopedobacter 1 151895 species Pseudopedobacter saltans 1 790 0 no rank 84568 0 1 1098 1986952 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 1098 1 0 0 23 4 3197 genus Mucilaginibacter 1 423349 0 857 1 Mucilaginibacter sp. BJC16-A31 species 1234841 Mucilaginibacter gotjawali species 1550579 0 1214 1 2617802 no rank 1 1103 0 Mucilaginibacter sp. PAMC 26640 species 1300914 0 1103 1 0 82974 29 141 Flavobacteriia 1 class 117743 200644 order 1 Flavobacteriales 42 140 82945 0 794 1 0 1333713 family 1 794 0 267986 genus 253245 species Owenweeksia hongkongensis 1 794 0 3 165 0 313602 no rank 1940138 genus 1 68 0 1415657 species Candidatus Walczuchella monophlebidarum 1 68 0 0 2 1 97 genus Candidatus Sulcia 1 336809 1 96 0 336810 species Candidatus Sulcia muelleri 2762318 family 21 23358 0 308865 genus 1 Elizabethkingia 25 6 6466 0 172045 species Elizabethkingia miricola 1 1188 0 0 1 2572 species Elizabethkingia anophelis 1117645 species Elizabethkingia genomosp. 4 1756150 0 1 942 0 778 1 Elizabethkingia genomosp. 3 species 1756149 species Elizabethkingia meningoseptica 238 0 1 961 10988 10 0 2782232 no rank 59732 Chryseobacterium 1 genus 10012 9 25 0 0 2577 3 no rank 2593645 887 1 0 878220 Chryseobacterium sp. StRB126 species 2015076 species Chryseobacterium sp. T16E-39 1 701 0 1 989 0 1721091 species Chryseobacterium sp. IHB B 17019 species Chryseobacterium piperi 558152 0 1 600 0 804 1 Chryseobacterium glaciei species 1685010 253 species Chryseobacterium indologenes 1 1909 0 0 1 3202 species Chryseobacterium gallinarum 1324352 1 895 0 1265445 species Chryseobacterium camelliae genus 2782228 0 976 1 0 976 1 Chryseobacterium taklimakanense species 536441 1 429 0 1013 genus 429 1 0 1014 Weeksella virosa species 28250 genus 1 Ornithobacterium 78 2 4266 0 0 1 4188 species Ornithobacterium rhinotracheale 28251 1 2 1209 0 34084 genus 1 Riemerella species Riemerella anatipestifer 34085 0 1 1208 39782 family 1 Blattabacteriaceae 23 10 2564 0 genus 1 Blattabacterium 34098 0 9 8 2541 6 2163 0 2647581 no rank species Blattabacterium sp. (Nauphoeta cinerea) 1316444 0 1 576 1 510 0 367806 species Blattabacterium sp. (Blatta orientalis) 0 189 1 Blattabacterium sp. (Mastotermes darwiniensis) species 39768 624186 Blattabacterium sp. (Blattella germanica) species 542 1 0 367488 species Blattabacterium sp. (Periplaneta americana) 1 163 0 0 1 183 species Blattabacterium sp. (Blaberus giganteus) 1186051 Blattabacterium cuenoti species 1653831 0 201 1 1 169 0 164514 species Blattabacterium punctulatus family 1 Crocinitomicaceae 1853230 0 2 3 633 332102 Fluviicola 1 genus 631 6 2 0 1 625 0 191579 species Fluviicola taffensis 0 99 500 55071 family 1 Flavobacteriaceae 49546 358023 genus 1 362 0 species Lutibacter profundi 1622118 0 1 362 575 1 0 261827 genus 0 575 1 Algibacter alginicilyticus species 1736674 0 1547 4 5 Cellulophaga 1 genus 104264 1 503 0 59600 species Cellulophaga algicola 0 1 638 species Cellulophaga baltica 76594 Cellulophaga lytica species 979 0 401 1 1649495 genus 624 1 0 1 624 0 2622645 no rank 1936081 species Seonamhaeicola sp. S2-3 1 624 0 genus 2700084 0 641 1 0 641 1 Lutibacter sp. LPB0138 species 1850246 237 genus 1 Flavobacterium 29 9 6460 0 996 species Flavobacterium columnare 1 909 0 507 1 0 96345 Flavobacterium psychrophilum species 0 1 649 species Flavobacterium commune 1306519 1763534 species Flavobacterium crassostreae 1 366 0 Flavobacterium indicum species 312277 0 495 1 species Flavobacterium gilvum 1492737 0 1 650 species Flavobacterium branchiophilum 55197 0 1 665 species Flavobacterium johnsoniae 986 0 1 2190 2840 5 9 0 292691 1 Gramella genus 0 1 475 species Gramella sp. LPB0144 1913577 615 1 0 411153 Gramella forsetii species 804 1 0 1486245 Gramella flava species 2126553 species Gramella sp. SH35 1 937 0 1 587 0 143222 genus 2633436 no rank 1 587 0 0 587 1 Salegentibacter sp. T436 species 1729720 2213 31 5 0 76831 1 Myroides genus 2 994 0 2642485 no rank 1458492 species Myroides sp. ZB35 1 463 0 Myroides sp. A21 species 1583100 0 531 1 species Myroides profundi 480520 0 1 445 0 1 743 species Myroides odoratimimus 76832 445 1 0 216431 genus 0 1 445 species Croceibacter atlanticus 313588 83612 genus 460 1 0 57029 Psychroflexus torquis species 460 1 0 0 335 1 genus 336276 2615019 no rank 335 1 0 2058135 Olleya sp. Bg11-27 species 335 1 0 no rank 61432 0 2 1085 0 567 1 Flavobacteriaceae bacterium 3519-10 species 531844 1150389 species Flavobacteriaceae bacterium UJ101 1 518 0 1 5 2523 0 252356 genus 1 Maribacter 3 1855 0 2615042 no rank 313603 Maribacter sp. HTCC2170 species 489 1 0 0 1 673 species Maribacter sp. T28 1836467 1644130 Maribacter sp. 1_2014MBL_MicDiv species 693 1 0 0 667 1 Maribacter cobaltidurans species 1178778 0 3 2 573 genus Formosa 1 225842 no rank 2644710 0 571 2 0 253 1 Formosa sp. Hel3_A1_48 species 1336795 species Formosa sp. Hel1_33_131 1336794 0 1 318 389486 genus 319 1 0 0 1 319 no rank 2648869 319 1 0 1453352 Sediminicola sp. YIK13 species 14933 15 147 0 1016 1 Capnocytophaga genus 1848904 Capnocytophaga stomatis species 948 1 0 2640652 no rank 6 4775 0 0 975 1 Capnocytophaga sp. oral taxon 864 species 1316593 0 1 955 species Capnocytophaga sp. ChDC OS43 209053 1945658 Capnocytophaga sp. H4358 species 437 1 0 species Capnocytophaga sp. oral taxon 323 1705617 0 1 785 1945657 species Capnocytophaga sp. H2931 1 514 0 Capnocytophaga sp. oral taxon 878 species 1316596 0 1109 1 Capnocytophaga gingivalis species 1017 0 2032 1 45243 Capnocytophaga haemolytica species 1202 1 0 0 2443 1 Capnocytophaga sputigena species 1019 Capnocytophaga leadbetteri species 327575 0 1050 1 1 468 0 28189 species Capnocytophaga cynodegmi Capnocytophaga canimorsus species 28188 0 933 1 species Capnocytophaga ochracea 1018 0 1 935 1675 5 1 0 363408 1 Nonlabens genus 0 2 958 no rank 2615035 species Nonlabens sp. MB-3u-79 2058134 0 1 457 0 501 1 Nonlabens sp. MIC269 species 1476901 328515 species Nonlabens dokdonensis 1 309 0 Nonlabens sediminis species 319236 0 407 1 2320 17 5 0 104267 1 Tenacibaculum genus 0 549 1 Tenacibaculum maritimum species 107401 Tenacibaculum todarodis species 1850252 0 442 1 507 1 0 669041 Tenacibaculum dicentrarchi species Tenacibaculum jejuense species 584609 0 805 1 1013 2 2 0 252306 Robiginitalea 1 genus 0 1011 1 Robiginitalea biformata species 252307 0 1 848 genus 417127 species Zunongwangia profunda 398743 0 1 848 2000 3 1 0 111500 1 Muricauda genus 111501 Muricauda ruestringensis species 1412 1 0 0 1 587 species Muricauda lutaonensis 516051 2688 6 3 0 52959 1 Polaribacter genus Polaribacter vadi species 1774273 0 616 1 0 1 612 species Polaribacter reichenbachii 996801 no rank 196858 0 3 1457 1 570 0 1529069 species Polaribacter sp. BM10 313598 Polaribacter sp. MED152 species 438 1 0 Polaribacter sp. ALD11 species 2058137 0 449 1 0 1 421 genus 1204360 762954 Siansivirga zeaxanthinifaciens species 421 1 0 1 581 0 393005 genus 0 581 1 Tamlana sp. UJ94 species 2069432 genus 1518147 0 1 501 1 501 0 1790137 species Wenyingzhuangia fucanilytica 0 1 419 genus 153265 101385 Aequorivita sublithincola species 419 1 0 1176327 genus 457 1 0 2636237 no rank 457 1 0 457 1 0 2094025 Aureitalea sp. RR4-38 species 326319 1 Dokdonia genus 1240 4 90 0 0 2 777 no rank 2615033 0 1 413 species Dokdonia sp. 4H-3-7-5 983548 313590 species Dokdonia sp. MED134 1 364 0 0 1 373 species Dokdonia donghaensis 326320 genus 1209327 0 1 696 1803846 species Flavivirga eckloniae 1 696 0 0 742 2 genus 286104 742 2 0 2615021 no rank 405 1 0 1936080 Winogradskyella sp. J14-2 species 754409 species Winogradskyella sp. PG-2 1 337 0 0 1161 3 4 1 Lacinutrix genus 291183 1 378 0 1486034 species Lacinutrix venerupis 2647285 no rank 780 2 0 2057808 Lacinutrix sp. Bg11-31 species 382 1 0 983544 Lacinutrix sp. 5H-3-7-4 species 398 1 0 640 1 0 178469 genus Arenibacter algicola species 616991 0 640 1 2 6 647 0 112040 genus 1 Zobellia 641 1 0 63186 Zobellia galactanivorans species family 1755828 0 2 318 0 318 5 2 1 Ichthyobacterium genus 1755829 species Ichthyobacterium seriolicida 242600 0 1 313 1280776 72 71 0 200643 1 Bacteroidia class 0 2 11 4686 order 1 Marinilabiliales 1970189 1573805 1 Marinifilaceae family 1183 2 1 0 1182 1 0 2060722 genus 0 1 1182 species Marinifilaceae bacterium SPP2 1717717 0 2 3 841 family 1 Salinivirgaceae 1970190 genus Salinivirga 1 1970191 0 2 2 839 0 837 1 Salinivirga cyanobacteriivorans species 1307839 558415 family 1 Marinilabiliaceae 104 2 1160 0 1056 1 0 1193324 genus species Alkalitalea saponilacus 889453 0 1 1056 1500 113 3 0 1471398 Prolixibacteraceae 1 family 1471399 1 Draconibacterium genus 1387 2 1 0 0 1386 1 Draconibacterium orientale species 1168034 0 448 59 1276018 order 1 Bacteroidales 171549 0 12516 6 family 2005520 2 27 1988 0 1784836 genus 1 Fermentimonas 0 1961 1 Fermentimonas caenicola species 1562970 0 3140 2 13 Proteiniphilum 1 genus 294702 1642647 species Proteiniphilum saccharofermentans 1 3127 0 307628 genus 1 Petrimonas 2 12 7388 0 Petrimonas mucosa species 1642646 0 7376 1 no rank 333046 0 5 200778 genus 909656 0 3 199840 357276 Bacteroides dorei species 31218 1 0 0 1 143974 species Bacteroides vulgatus 821 0 1 24648 species Bacteroides salanitronis 376805 511434 1 Candidatus Azobacteroides genus 938 6 2 0 511435 Candidatus Azobacteroides pseudotrichonymphae species 932 1 0 0 80727 7 135 Tannerellaceae 1 family 2005525 Tannerella 1 genus 195950 0 15383 22 3 28112 Tannerella forsythia species 9151 1 0 0 6210 1 no rank 2620507 species Tannerella sp. oral taxon HOT-286 712710 0 1 6210 3 165 65209 0 375288 genus Parabacteroides 1 14047 1 0 823 Parabacteroides distasonis species 1 50997 0 2649774 no rank species Parabacteroides sp. CT06 2025876 0 1 50997 22733 3 1 0 1853231 1 Odoribacteraceae family 283168 genus 1 Odoribacter 105 2 22732 0 28118 species Odoribacter splanchnicus 1 22627 0 37891 9 5 0 171550 1 Rikenellaceae family 0 2 6 2589 genus Mucinivorans 1 1611681 2583 1 0 1433126 Mucinivorans hirudinis species 1 Alistipes genus 239759 0 35293 2 86 214856 species Alistipes finegoldii 1 35207 0 1 Porphyromonadaceae family 171551 0 13851 11 4 1 Porphyromonas genus 836 0 13840 26 3 837 Porphyromonas gingivalis species 10455 1 0 28123 species Porphyromonas asaccharolytica 1 3359 0 2 1 3105 0 2005523 family 1 Paludibacteraceae genus 346096 0 1 3104 1 3104 0 185300 species Paludibacter propionicigenes 171552 Prevotellaceae 1 family 488125 75 11 0 genus Prevotella 1 838 0 10 739 488050 1 110051 0 28131 species Prevotella intermedia 0 24600 1 Prevotella enoeca species 76123 56708 1 0 1177574 Prevotella jejuni species species Prevotella fusca 589436 0 1 56010 48255 1 0 52227 Prevotella dentalis species no rank 2638335 0 1 14878 Prevotella sp. oral taxon 299 species 652716 0 14878 1 Prevotella denticola species 28129 0 47125 1 28132 species Prevotella melaninogenica 1 58667 0 839 Prevotella ruminicola species 71017 1 0 0 1 1529 no rank 185291 1 1529 0 1400053 species Bacteroidales bacterium CF family Bacteroidaceae 1 815 0 85 11 372066 816 Bacteroides 1 genus 371981 19840 10 0 0 19491 1 Bacteroides helcogenes species 290053 species Bacteroides zoogleoformans 28119 0 1 17262 47678 Bacteroides caccae species 16501 1 0 Bacteroides ovatus species 28116 0 59524 1 0 27360 1 Bacteroides cellulosilyticus species 246787 1 101696 0 818 species Bacteroides thetaiotaomicron 0 14614 1 Bacteroides heparinolyticus species 28113 1 58131 0 817 species Bacteroides fragilis Bacteroides caecimuris species 1796613 0 37562 1 0 42249 3 14 Barnesiellaceae 1 family 2005519 42235 33 2 0 397864 1 Barnesiella genus 42202 1 0 397865 Barnesiella viscericola species Chitinophagia 1 class 1853228 0 10104 10 17 Chitinophagales 1 order 1853229 0 10094 15 16 10079 15 61 0 563835 Chitinophagaceae 1 family Filimonas 1 genus 649460 0 1140 1 2 477680 Filimonas lacunae species 1139 1 0 379899 genus Niabella 1 4 3 1828 0 446683 Niabella soli species 969 1 0 0 855 1 Niabella ginsenosidivorans species 1176587 0 2631 2 28 Niastella 1 genus 354354 354356 species Niastella koreensis 1 2603 0 398041 genus Flavisolibacter 1 5 2 1041 0 1 1036 0 1492898 species Flavisolibacter tropicus 1769012 genus 1 Arachidicoccus 1 2 667 0 2636138 no rank 1 666 0 666 1 0 1850526 Arachidicoccus sp. BS20 species genus Chitinophaga 1 79328 0 3 23 2711 986 1 0 2029983 Chitinophagaceae bacterium 13 species 0 1702 1 Chitinophaga pinensis species 79329 0 3 6 2350 class 1 Saprospiria 1937959 order 1936988 0 2347 5 89374 family 415 2 0 415 1 2 0 1007 1 Saprospira genus 0 414 1 Saprospira grandis species 1008 1937961 Haliscomenobacteraceae 1 family 1932 3 1 0 2349 genus 1 Haliscomenobacter 1 2 1931 0 0 1930 1 Haliscomenobacter hydrossis species 2350 Cytophagia 1 class 768503 0 44097 68 54 44029 53 140 0 768507 Cytophagales 1 order 1501348 family 2 341 0 genus 281119 0 1 238 species Candidatus Amoebophilus asiaticus 281120 0 1 238 0 103 1 genus 273135 2641185 no rank 1 103 0 species Cardinium endosymbiont of Encarsia pergandiella 249402 0 1 103 563798 Cyclobacteriaceae 1 family 3433 8 3 0 0 1 750 genus 232244 species Belliella baltica 232259 0 1 750 8 2 608 0 246875 genus 1 Algoriphagus 1727163 Algoriphagus sp. M8-2 species 600 1 0 Cyclobacterium 1 genus 68288 0 1002 13 3 Cyclobacterium marinum species 104 0 563 1 0 1 426 species Cyclobacterium amurskyense 320787 genus 390846 0 1 1070 0 1 1070 species Echinicola vietnamensis 390884 89373 Cytophagaceae 1 family 11229 30 15 0 0 2 4 1736 genus Dyadobacter 1 120831 1732 1 0 94254 Dyadobacter fermentans species 0 17 6 5225 genus Spirosoma 1 107 1211326 species Spirosoma aerolatum 1 1091 0 0 1 841 species Spirosoma rigui 564064 species Spirosoma radiotolerans 1379870 0 1 826 1292 1 0 1178516 Spirosoma montaniterrae species 0 1 1158 species Spirosoma sp. HA7 2057025 Cytophaga 1 genus 978 0 803 1 2 0 802 1 Cytophaga hutchinsonii species 985 0 1 1225 genus 319458 Leadbetterella byssophila species 316068 0 1225 1 Fibrella 1 genus 861914 0 1130 2 3 0 1127 1 no rank 2620963 1 1127 0 1834519 species Fibrella sp. ES10-3-2-2 1080 1 0 105 genus 0 1 1080 species Runella slithyformis 106 1937968 family Bernardetiaceae 1 4 3 516 0 Bernardetia 1 genus 1937972 0 512 2 2 0 510 1 Bernardetia litoralis species 999 2762301 family 595 2 0 869806 genus 1 Marivirga 3 2 595 0 0 1 592 species Marivirga tractuosa 1006 Hymenobacteraceae 1 family 1853232 0 23238 16 65 1379908 genus 1 Rufibacter 24 4 4532 0 2639626 no rank 2974 2 0 species Rufibacter sp. DG31D 1379910 0 1 1313 Rufibacter sp. DG15C species 1379909 0 1661 1 512763 species Rufibacter tibetensis 1 1534 0 323449 genus Pontibacter 1 11 3 3299 0 1 1659 0 400092 species Pontibacter korlensis 0 1629 1 Pontibacter akesuensis species 388950 genus 1 Hymenobacter 89966 0 8 120 15342 2615202 no rank 10602 5 0 0 1582 1 Hymenobacter sp. DG25A species 1385663 0 2876 1 Hymenobacter sp. APR13 species 1356852 2433 1 0 1484118 Hymenobacter sp. PAMC 26628 species 1 1547 0 1385664 species Hymenobacter sp. DG25B Hymenobacter sp. PAMC 26554 species 1484116 0 2164 1 Hymenobacter sedentarius species 1411621 0 2216 1 1446467 Hymenobacter swuensis species 2404 1 0 3 6 1643 0 1853234 family 1 Persicobacteraceae 59740 1 Persicobacter genus 1637 2 2 0 2664020 no rank 1 1635 0 Persicobacter sp. JZB09 species 1085624 0 1635 1 Flammeovirgaceae 1 family 200667 0 2894 4 3 340671 no rank 1551 1 0 1257021 Flammeovirgaceae bacterium 311 species 1551 1 0 genus 59739 0 1 1339 2637820 no rank 1 1339 0 1339 1 0 1191459 Flammeovirga sp. MY04 species 0 7 1015 phylum 1134404 0 1015 2 7 Ignavibacteria 1 class 795747 0 2 6 1013 order 1 Ignavibacteriales 795748 2 3 556 0 1334117 family 1 Melioribacteraceae 1134403 1 Melioribacter genus 554 1 2 0 0 1 553 species Melioribacter roseus 1134405 2 455 0 795749 family genus 1 Ignavibacterium 795750 0 1 2 455 1 454 0 591197 species Ignavibacterium album 0 9369 21 phylum 1090 21 49 9369 0 191410 class 1 Chlorobia 191411 order Chlorobiales 1 20 98 9320 0 Chlorobiaceae 1 family 191412 0 9222 56 19 0 4 45 2906 genus 1 Chlorobaculum 256319 species Chlorobaculum parvum 274539 0 1 945 274537 Chlorobaculum limnaeum species 1201 1 0 1097 species Chlorobaculum tepidum 1 715 0 0 8 3521 no rank 274493 1091 Chlorobium 1 genus 2048 9 5 0 1094 Chlorobium phaeovibrioides species 437 1 0 Chlorobium chlorochromatii species 337090 0 366 1 0 623 1 Chlorobium limicola species 1092 Chlorobium phaeobacteroides species 1096 0 613 1 1473 3 1 0 1099 1 Pelodictyon genus 0 687 1 Pelodictyon phaeoclathratiforme species 34090 species Pelodictyon luteolum 1100 0 1 785 0 2 5 2269 genus 1 Prosthecochloris 1101 2632826 no rank 3 1603 0 1868325 Prosthecochloris sp. CIB 2401 species 458 1 0 species Prosthecochloris sp. HL-130-GSB 1974213 0 1 602 1 543 0 281093 species Prosthecochloris sp. GSB1 0 664 1 Prosthecochloris aestuarii species 1102 genus 100715 0 470 1 1 470 0 100716 species Chloroherpeton thalassium 0 3 129 phylum 2138240 class Coprothermobacteria 1 2138243 0 3 2 129 127 1 2 0 2138246 1 Coprothermobacterales order 0 126 1 family 2138247 68335 genus 1 126 0 126 1 0 35786 Coprothermobacter proteolyticus species 0 20 6652 phylum 57723 4 3 615 0 1562566 class Blastocatellia 1 0 2 2 611 genus 1 Chloracidobacterium 458032 1 609 0 458033 species Chloracidobacterium thermophilum 6037 17 26 0 204432 1 Acidobacteriia class Acidobacteriales 1 order 204433 0 4899 57 12 204434 family Acidobacteriaceae 1 55 11 4842 0 0 7 3 1726 genus 1 Terriglobus 392733 0 684 1 Terriglobus saanensis species 870903 1035 1 0 392734 Terriglobus roseus species genus Granulicella 1 940557 0 4 3 1463 0 807 1 Granulicella mallensis species 940614 1 652 0 940615 species Granulicella tundricola 33973 genus 1 Acidobacterium 1 2 847 0 0 846 1 Acidobacterium capsulatum species 33075 0 76 2 751 genus Candidatus Koribacter 1 658061 0 1 675 species Candidatus Koribacter versatilis 658062 1112 26 4 0 332160 Solibacterales 1 order 3 8 1086 0 332161 family Solibacteraceae 1 332162 Candidatus Solibacter 1 genus 1078 13 2 0 1065 1 0 332163 Candidatus Solibacter usitatus species