members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4640 19494242 31 30760 0 0 1 name 0 2157 superkingdom 255 63603 366 1 clade 1783276 0 1 366 0 phylum 1801631 0 2490204 genus 1 366 1 366 0 Candidatus Micrarchaeota archaeon Mia14 1920749 species clade 1783275 0 8751 45 5813 35 phylum 28889 0 class 101 183924 Thermoprotei 0 1 5813 35 460 2 871006 order 0 0 255472 family 1 412 412 1 200414 genus 0 0 Caldisphaera lagunensis 200415 species 1 412 family 871007 0 48 1 1 48 0 genus 105850 242703 species 0 Acidilobus saccharovorans 48 1 Sulfolobales 0 2281 order 7 9 3370 1 118883 family 0 3363 8 1 528 0 12914 genus Acidianus hospitalis 0 563177 species 1 528 3 1877 0 genus 2284 2641160 no rank 0 434 1 1891280 species 0 Sulfolobus sp. A20 434 1 Sulfolobus islandicus 0 species 43080 1 1161 1 282 Sulfolobus acidocaldarius 0 2285 species 314 1 2100760 genus 0 314 1 species 2287 Sulfolobus solfataricus 0 genus 69655 0 400 1 400 1 111955 species 0 Sulfolobus tokodaii 0 genus 41980 2 244 1006005 species 0 Metallosphaera cuprina 16 1 species 43687 Metallosphaera sedula 0 228 1 0 order 2266 11 1046 658 4 114378 family 0 2268 genus 0 658 4 Thermofilum adornatus 0 species 1365176 1 110 392 1 species 2269 0 Thermofilum pendens 0 Thermofilum uzonense 1550241 species 1 84 0 Thermofilum carboxyditrophus 1483572 species 1 72 7 388 0 family 2267 1 137 0 76886 genus 1 137 0 Caldivirga maquilingensis species 76887 164450 genus 1 Vulcanisaeta 0 104 1 3 68 1 species 164451 0 Vulcanisaeta distributa 35 1 985052 species Vulcanisaeta moutnovskia 0 115 2 genus 2270 0 1 74 Thermoproteus uzoniensis 0 species 184117 2271 species 0 Thermoproteus tenax 41 1 2276 genus 0 32 1 1 32 0 Pyrobaculum islandicum species 2277 order 2 114380 Desulfurococcales 0 1 836 12 2307 family 0 130 3 1 34 0 54251 genus 1 34 0 Pyrolobus fumarii 54252 species 0 2308 genus 1 46 species 1273541 Pyrodictium delaneyi 0 46 1 0 genus 54247 1 50 Hyperthermus butylicus 0 species 54248 1 50 704 8 2272 family 0 25 1 477695 genus 0 1 25 0 Thermogladius calderae 1200300 species 0 2273 genus 2 17 6 1 2275 species Desulfurococcus mucosus 0 1 11 0 Desulfurococcus amylolyticus species 94694 201 1 54253 genus 0 54254 species 0 Thermosphaera aggregans 201 1 2 49 0 genus 54258 1 40 Ignicoccus hospitalis 0 species 160233 9 1 species 54259 0 Ignicoccus islandicus 412 2 2279 genus 0 1 118 Staphylothermus hellenicus 0 84599 species Staphylothermus marinus 0 species 2280 1 294 0 phylum 651137 8 2907 3 1822 0 order 31932 3 1822 0 family 338190 1 227 0 genus 1993653 Candidatus Nitrosomarinus catalina 0 1898749 species 1 227 338191 genus 0 1595 2 Candidatus Nitrosopumilus sediminis 0 species 1229909 1 633 Candidatus Nitrosopumilus adriaticus 0 1580092 species 1 962 0 no rank 651142 3 734 0 1825023 genus 2 319 species 1846278 0 Candidatus Nitrosotenuis sp. AQ6f 49 1 1603555 species Candidatus Nitrosotenuis cloacae 0 270 1 0 1593364 genus 1 415 species 1410606 Candidatus Nitrosopelagicus brevis 0 415 1 class 1643678 0 351 2 1968909 order 0 216 1 family 1968910 0 216 1 216 1 498374 genus 0 216 1 2045011 species 0 Candidatus Nitrosocaldus islandicus 1 135 0 1033996 order 0 family 1033997 1 135 497726 genus 0 135 1 species 1034015 0 Nitrososphaera viennensis 135 1 31 2 51967 phylum 0 genus 2 498845 0 Candidatus Korarchaeum 1 31 2 species 498846 0 Candidatus Korarchaeum cryptofilum 29 1 Euryarchaeota 0 28890 phylum 6 209 54486 1 class 12 183968 Thermococci 0 1 5615 39 38 5603 0 2258 order 1 5603 38 1 family 2259 0 Thermococcaceae 37 1 83867 genus 0 Palaeococcus pacificus 0 971279 species 1 37 Thermococcus 0 2263 genus 20 29 4183 1 96 1 72803 species Thermococcus siculi 0 195522 species 0 Thermococcus nautili 126 1 Thermococcus litoralis 0 2265 species 1 72 83 1 species 311400 Thermococcus kodakarensis 0 337 1 277988 species Thermococcus thioreducens 0 species 342948 Thermococcus onnurineus 0 38 1 0 Thermococcus profundus 49899 species 1 349 1712654 species Thermococcus piezophilus 0 37 1 121 1 187880 species Thermococcus radiotolerans 0 Thermococcus celer 0 species 2264 1 205 108 1 species 163003 0 Thermococcus cleftensis 1 67 Thermococcus paralvinellae 0 species 582419 1 125 Thermococcus guaymasensis 0 110164 species 71997 species Thermococcus gorgonarius 0 133 1 0 Thermococcus barossii 54077 species 1 114 53952 species 0 Thermococcus peptonophilus 187 1 Thermococcus gammatolerans 0 species 187878 1 91 species 54262 Thermococcus chitonophagus 0 543 1 290 1 species 71998 0 Thermococcus pacificus 82 1 species 1505907 Thermococcus eurythermalis 0 species 172049 0 Thermococcus sibiricus 156 1 2627626 no rank 0 502 6 Thermococcus sp. P6 0 122420 species 1 42 142 1 species 246969 0 Thermococcus sp. AM4 species 2016361 0 Thermococcus sp. EXT12c 110 1 species 2008440 0 Thermococcus sp. 5-4 72 1 1 46 Thermococcus sp. 2319x1 0 species 1674923 1 90 0 Thermococcus sp. 4557 species 1042877 species 55802 Thermococcus barophilus 0 301 1 0 2260 genus 7 1382 0 Pyrococcus abyssi species 29292 1 278 species 53953 Pyrococcus horikoshii 0 258 1 1008460 species Pyrococcus yayanosii 0 131 1 1 130 Pyrococcus furiosus 0 2261 species 2629106 no rank 0 271 2 210 1 1183377 species Pyrococcus sp. ST04 0 61 1 342949 species Pyrococcus sp. NA2 0 1 314 Pyrococcus kukulkanii 0 1609559 species 4042 16 clade 2283796 0 14 1 3862 0 Thermoplasmata 20 class 183967 0 order 2301 7 1784 0 family 46630 1 297 0 46631 genus 1 297 species 82076 0 Picrophilus torridus 297 1 0 family 1747776 1 154 154 1 genus 1747777 0 0 Cuniculiplasma divulgatum 1673428 species 1 154 227 2 90142 family 0 2 227 0 74968 genus 1 66 Ferroplasma acidiphilum 0 74969 species 161 1 97393 species 0 Ferroplasma acidarmanus 367 1 no rank 1919231 0 1 367 Thermoplasmatales archaeon BRNA1 0 1054217 species 2 739 0 family 46659 2302 genus 0 739 2 1 253 Thermoplasma volcanium 0 50339 species 486 1 species 2303 Thermoplasma acidophilum 0 1235850 order 0 1036 5 499 2 family 2517203 0 2 1 499 Candidatus Methanomethylophilus 0 30 genus 1291539 species 1291540 Candidatus Methanomethylophilus alvus 0 469 1 3 family 1577788 Methanomassiliicoccaceae 0 1 537 3 genus 1607807 0 264 1 1 264 0 Candidatus Methanoplasma termitum species 1577791 genus 1080709 0 270 1 Candidatus Methanomassiliicoccus intestinalis 0 1406512 species 1 270 1 1022 0 no rank 1234666 methanogenic archaeon ISO4-H5 0 1495144 species 1 1022 1803510 clade 0 180 2 0 379546 genus 2 180 0 2633939 no rank 1 45 1 45 0 Aciduliprofundum sp. MAR08-339 673860 species 135 1 379547 species Aciduliprofundum boonei 0 9 1593 1 0 Archaeoglobi 183980 4 class 8 1589 0 order 2231 1589 8 family 2232 0 224 1 3 190818 genus 1 0 Geoglobus species 565033 0 Geoglobus acetivorans 143 1 species 113653 0 Geoglobus ahangari 80 1 0 genus 54260 1 469 54261 species 0 Ferroglobus placidus 469 1 896 4 genus 2233 0 1 103 0 Archaeoglobus profundus species 84156 1 423 Archaeoglobus fulgidus 0 2234 species 1316941 species 0 Archaeoglobus sulfaticallidus 237 1 Archaeoglobus veneficus 0 58290 species 1 133 107 26380 0 2290931 clade 60 1 10042 0 Halobacteria 66 class 183963 Halobacteriales 0 2235 order 34 25 4282 1 Halobacteriaceae 0 2236 family 11 9 1192 1 1656823 genus 0 245 1 0 Halanaeroarchaeum sulfurireducens species 1604004 1 245 0 1980514 genus 1 100 1 100 0 Halodesulfurarchaeum formicicum species 1873524 142 1 2 332246 genus 10 Halalkalicoccus 0 132 1 413810 species Halalkalicoccus jeotgali 0 Halobacterium 0 genus 12 2239 4 1 694 1 255 0 2668073 no rank 1 255 0 Halobacterium sp. DL1 751944 species 1 248 Halobacterium hubeiense 0 species 1407499 179 1 2242 species 0 Halobacterium salinarum 15 1 3056 Haloarculaceae 0 family 174 1963268 3 genus 146825 Halorhabdus 0 1 614 3 0 Halorhabdus utahensis 146826 species 1 442 0 Halorhabdus tiamatea 430914 species 1 169 18 genus 2237 Haloarcula 0 1 1395 5 424 1 no rank 2624677 0 1 424 0 Haloarcula sp. CBA1115 1592728 species Haloarcula taiwanensis 0 1932004 species 1 269 51589 species Haloarcula hispanica 0 418 1 species 2238 Haloarcula marismortui 0 266 1 1 genus 1073987 Halorientalis 0 1 183 2 0 no rank 2648975 1 182 1 182 Halorientalis sp. IM1011 0 species 1932360 2 262 0 63743 genus Natronomonas pharaonis 0 species 2257 1 139 Natronomonas moolapensis 0 species 416273 1 123 5 genus 203135 Halomicrobium 0 1 428 2 57705 species Halomicrobium mukohataei 0 423 1 1644060 order 24 0 Natrialbales 2624 1 16 2600 1 15 1644061 53 family Natrialbaceae 0 1 175 0 353799 genus 1 175 0 Halostagnicola larsenii species 353800 394 1 2 203193 2 genus 0 Halobiforma 392 1 species 229731 0 Halobiforma lacisalsi 1269201 1 genus Salinarchaeum 0 181 1 2 180 1 2621923 no rank 0 1333523 species 0 Salinarchaeum sp. Harcht-Bsk1 180 1 244 1 genus 387342 0 244 1 species 387343 Halopiger xanaduensis 0 1 99 0 2256 genus 0 Natronobacterium gregoryi species 44930 1 99 121871 1 genus Haloterrigena 0 504 1 3 species 62320 0 Haloterrigena turkmenica 368 1 0 Haloterrigena daqingensis species 588898 1 135 396 2 88723 genus 0 1 178 0 Natrinema pellirubrum species 69525 1 218 0 no rank 2622230 1 218 0 Natrinema sp. J7-2 406552 species 1 309 0 63742 genus 13769 species Natrialba magadii 0 309 1 29287 genus 0 245 1 0 Natronococcus occultus species 29288 1 245 18 1 3070 0 Haloferacales order 20 1644055 2678336 no rank 0 140 1 1 140 0 halophilic archaeon DL31 756883 species 8 839 1 0 Halorubraceae 1963271 family 3 genus 151 1644057 0 Salinigranum 1 408 2 1 257 Salinigranum rubrum 0 species 755307 Halopenitus 0 1209988 12 genus 2 130 1 Halopenitus persicus 0 1048396 species 1 118 1 298 3 6 genus 56688 Halorubrum 0 162 1 species 29284 0 Halorubrum trapanicum 1 130 0 Halorubrum lacusprofundi species 2247 Haloferacaceae 0 family 2 1644056 8 1 2071 554 1 genus 293431 0 554 1 species 293091 Haloquadratum walsbyi 0 0 Halogeometricum 1 genus 60846 2 1 326 1 325 Halogeometricum borinquense 0 species 60847 1 1189 4 19 genus 2251 0 Haloferax species 2252 0 Haloferax mediterranei 284 1 500 1 species 2246 0 Haloferax volcanii 1 386 Haloferax gibbonsii 0 35746 species 47 1 16338 Methanomicrobia 0 138 class 224756 4404 1 15 2191 6 order Methanomicrobiales 0 0 Methanoregulaceae 1198451 4 family 6 1220 1 2 1 435 Methanosphaerula 0 1 genus 475087 434 1 475088 species Methanosphaerula palustris 0 0 Methanoregula 395331 3 genus 3 781 1 252 1 882104 species Methanoregula formicica 0 358766 species Methanoregula boonei 0 526 1 0 family 88404 1 802 802 1 genus 2192 0 0 Methanocorpusculum labreanum 83984 species 1 802 1719 6 family 2194 0 0 Methanolacinia 230355 genus 1 2 868 1 1 867 0 Methanolacinia petrolearia species 54120 851 1 4 45989 genus 9 Methanoculleus 0 2619537 no rank 0 404 1 86622 species Methanoculleus sp. MAB1 0 404 1 2198 species 0 Methanoculleus marisnigri 236 1 1 202 Methanoculleus bourgensis 0 83986 species 657 1 196137 family 0 1 657 0 2202 genus 1 657 Methanospirillum hungatei 0 species 2203 610 1 3 570264 order 13 0 Methanocellales 0 family 570265 2 597 0 570266 genus 2 597 1 123 0 Methanocella conradii species 1175444 species 1175445 0 Methanocella arvoryzae 474 1 28 1 11186 Methanosarcinales 0 order 18 94695 Methanosarcinaceae 0 family 43 2206 23 1 10477 13 1 6700 Methanosarcina 0 40 genus 2207 species 418008 Methanosarcina horonobensis 0 593 1 1 655 0 Methanosarcina acetivorans species 2214 1 1707 0 Methanosarcina barkeri species 2208 species 2209 Methanosarcina mazei 0 841 1 species 2210 Methanosarcina thermophila 0 247 1 353 1 38027 species 0 Methanosarcina siciliae 1462 4 no rank 2644672 0 1434099 species Methanosarcina sp. Kolksee 0 498 1 1434102 species Methanosarcina sp. WH1 0 311 1 species 1434103 0 Methanosarcina sp. WWM596 417 1 1 236 0 Methanosarcina sp. MTP4 species 1434100 species 2215 0 Methanosarcina vacuolata 519 1 0 Methanosarcina lacustris species 170861 1 283 0 2175 genus 2 1113 2177 species Methanohalophilus halophilus 0 522 1 591 1 2176 species Methanohalophilus mahii 0 0 genus 2220 1 367 species 420950 Methanolobus psychrophilus 0 367 1 1 355 0 2321 genus 2322 species 0 Methanohalobium evestigatum 355 1 0 196136 genus 1 367 39669 species 0 Methanosalsum zhilinae 367 1 0 Methanomethylovorans 101191 1 genus 2 839 1 1 838 Methanomethylovorans hollandica 0 101192 species 2 693 0 genus 2225 2226 species Methanococcoides methylutens 0 182 1 511 1 29291 species 0 Methanococcoides burtonii family 1 143067 Methanosaetaceae 0 1 691 4 1 690 3 1 genus 2222 Methanothrix 0 1 410 0 Methanosaeta harundinacea species 301375 279 1 2223 species Methanothrix soehngenii 0 0 2283794 clade 37 16850 183939 class 0 7867 14 23 order 2182 0 Methanococcales 1 7867 14 family 196117 0 3095 8 196119 genus 8 Methanotorris 0 218 1 2 1 210 0 Methanotorris igneus species 2189 6 2877 0 genus 196118 Methanocaldococcus vulcanius 0 73913 species 1 535 192 1 species 67760 Methanocaldococcus infernus 0 83171 species 0 Methanocaldococcus fervens 326 1 Methanocaldococcus jannaschii 0 species 2190 1 437 species 1301915 0 Methanocaldococcus bathoardescens 848 1 0 no rank 2641196 1 539 539 1 644281 species Methanocaldococcus sp. FS406-22 0 4749 5 family 2183 0 666 1 155862 genus 0 species 155863 0 Methanothermococcus okinawensis 666 1 0 genus 2184 4 4083 species 42879 0 Methanococcus aeolicus 356 1 1 639 0 Methanococcus vannielii species 2187 0 Methanococcus maripaludis 39152 species 1 2639 1 449 0 Methanococcus voltae species 2188 Methanobacteria 0 2 class 183925 23 1 8983 8981 22 order 2158 0 693 1 2178 family 0 1 693 0 genus 2179 Methanothermus fervidus 0 species 2180 1 693 Methanobacteriaceae 0 family 1 2159 21 1 8288 8 2246 1 0 Methanobacterium 2160 3 genus 0 Methanobacterium lacus 877455 species 1 582 579 2 no rank 2627676 0 species 1911685 Methanobacterium sp. MZ-A1 0 179 1 400 1 1379702 species 0 Methanobacterium sp. MB1 species 59277 0 Methanobacterium subterraneum 170 1 451 1 2162 species Methanobacterium formicicum 0 1 292 Methanobacterium paludis 0 species 868131 Methanobacterium congolense 0 118062 species 1 169 7 1 4890 Methanobrevibacter 0 4 genus 2172 230361 species 0 Methanobrevibacter millerae 676 1 0 Methanobrevibacter ruminantium species 83816 1 772 species 2173 Methanobrevibacter smithii 0 851 1 species 294671 Methanobrevibacter olleyae 0 1402 1 no rank 2638681 0 1185 2 1609968 species 0 Methanobrevibacter sp. YE315 662 1 523 1 species 224719 Methanobrevibacter sp. AbM4 0 0 145260 genus 4 251 1 55 Methanothermobacter marburgensis 0 species 145263 92 1 no rank 2631116 0 1 92 0 Methanothermobacter sp. CaT2 species 866790 Methanothermobacter thermautotrophicus 0 species 145262 1 67 37 1 145261 species Methanothermobacter wolfeii 0 1 900 0 genus 2316 0 Methanosphaera stadtmanae species 2317 1 900 superkingdom 73 2 Bacteria 0 1 19399879 4353 8 2502 0 phylum 200940 0 class 67799 8 2502 2502 1 8 188710 order 1 Thermodesulfobacteriales 0 1 2501 7 3 family 188711 0 Thermodesulfobacteriaceae 0 genus 444090 1 514 514 1 species 1653476 Caldimicrobium thiodismutans 0 3 1211 1 Thermodesulfobacterium 0 1740 genus 12 Thermodesulfobacterium commune 0 species 1741 1 332 867 1 1295609 species 0 Thermodesulfobacterium geofontis Thermodesulfatator 0 241192 1 genus 2 773 1 Thermodesulfatator indicus 0 171695 species 1 772 no rank 2323 0 1029 3 1783234 clade 0 1029 3 886 2 95901 clade 0 0 class 2497643 2 886 886 2 2497644 order 0 2 886 0 family 2497645 genus 30 1551504 Candidatus Babela 0 1 886 2 0 Candidatus Babela massiliensis species 673862 1 856 0 phylum 95818 1 143 no rank 1895827 0 143 1 143 1 species 2056494 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 5 1946 0 phylum 200938 5 1946 1 0 Chrysiogenetes 118001 class 53 4 1 1893 Chrysiogenales 0 order 75 189769 7 family 189770 Chrysiogenaceae 0 1 1818 3 393029 genus 8 0 Desulfurispirillum 1811 1 2 1803 1 936456 species Desulfurispirillum indicum 0 1 1672449 1983 788 phylum 1224 Proteobacteria 0 1 834868 872 class 1562 1236 Gammaproteobacteria 0 129 167563 1 0 Pseudomonadales 72274 996 order family 70 468 Moraxellaceae 0 1 42178 42 469 genus 276 Acinetobacter 0 32683 1 25 106648 species Acinetobacter bereziniae 0 1156 1 29430 species Acinetobacter haemolyticus 0 1354 1 1221 1 species 40216 Acinetobacter radioresistens 0 1324350 species Acinetobacter equi 0 3119 1 1 480 0 202950 species strain 62977 Acinetobacter sp. ADP1 0 480 1 327 1 487316 species Acinetobacter soli 0 0 species group 909768 5 13223 Acinetobacter calcoaceticus 0 species 471 1 3038 Acinetobacter nosocomialis 0 106654 species 1 1508 1 3149 Acinetobacter pittii 0 48296 species Acinetobacter baumannii 0 470 species 1 4477 1 1051 Acinetobacter lactucae 0 species 1785128 species 40214 Acinetobacter johnsonii 0 559 1 196816 no rank 0 5712 7 species 1646498 Acinetobacter sp. TTH0-4 0 1149 1 1 917 0 Acinetobacter sp. LoGeW2-3 species 1808001 1407071 species 0 Acinetobacter sp. TGL-Y2 736 1 0 Acinetobacter sp. SWBY1 species 2079596 1 473 1636603 species Acinetobacter sp. ACNIH1 0 618 1 1758189 species Acinetobacter sp. ACNIH2 0 811 1 1008 1 1608473 species Acinetobacter sp. NCu2D-2 0 1163 1 1148157 species 0 Acinetobacter oleivorans species 1789224 Acinetobacter larvae 0 644 1 0 Acinetobacter junii 40215 species 1 2084 1 838 0 Acinetobacter schindleri species 108981 1 527 0 Acinetobacter indicus 756892 species 6171 1 11 497 70 genus 0 Psychrobacter 764 1 334543 species 0 Psychrobacter arcticus 237 1 species 330922 0 Psychrobacter cryohalolentis 0 196806 no rank 6 3597 1699624 species 0 Psychrobacter sp. P11G5 228 1 0 Psychrobacter sp. G 571800 species 1 331 species 1028416 0 Psychrobacter sp. DAB_AL43B 764 1 248 1 species 1699622 Psychrobacter sp. P2G3 0 species 349106 Psychrobacter sp. PRwf-1 0 723 1 Psychrobacter sp. AntiMn-1 0 species 1720344 1 1303 species 261164 Psychrobacter alimentarius 0 823 1 1 680 Psychrobacter urativorans 0 species 45610 genus 272 475 0 Moraxella 1 3254 5 species 480 Moraxella catarrhalis 0 590 1 Moraxella osloensis 0 34062 species 1 1318 species 386891 Moraxella bovoculi 0 761 1 0 Moraxella ovis 29433 species 1 313 family 863 135621 0 Pseudomonadaceae 1 124389 86 Oblitimonas 0 1849530 1 genus 2 351 1 350 1 1697053 species 0 Oblitimonas alkaliphila Pseudomonas 0 286 4395 genus 80 120032 1 Pseudomonas versuta 0 species 1788301 1 451 9 15292 0 species group 136843 9234 1 294 species 0 Pseudomonas fluorescens 1 1215 Pseudomonas azotoformans 0 species 47878 species 75612 0 Pseudomonas mandelii 974 1 1 476 0 Pseudomonas poae species 200451 200450 species 0 Pseudomonas trivialis 821 1 906 1 380021 species Pseudomonas protegens 0 1 525 0 Pseudomonas veronii species 76761 1 567 0 Pseudomonas corrugata 47879 species 76758 species Pseudomonas orientalis 0 574 1 136841 species group 0 15345 6 1 4431 0 Pseudomonas mendocina 300 species 1 1655 0 1232139 species subgroup Pseudomonas furukawaii 0 species 1149133 1 1655 1 2629 Pseudomonas citronellolis 0 species 53408 0 Pseudomonas aeruginosa 287 species 1 4367 Pseudomonas resinovorans 0 53412 species 1 1134 1129 1 43263 species 0 Pseudomonas alcaligenes 1 750 0 Pseudomonas cerasi 1583341 species 1 1636 0 Pseudomonas koreensis species 198620 0 Pseudomonas alkylphenolica species 237609 1 960 0 Pseudomonas frederiksbergensis 104087 species 1 1734 101564 species Pseudomonas alcaliphila 0 918 1 157782 species 0 Pseudomonas parafulva 1343 1 1374 1 237610 species 0 Pseudomonas psychrotolerans 65741 species 0 Pseudomonas knackmussii 1072 1 2 5942 0 136842 species group 1511 1 species 296 0 Pseudomonas fragi 4431 1 587753 species 0 Pseudomonas chlororaphis 0 136849 species group 8 12316 Pseudomonas cichorii 0 36746 species 1 1066 Pseudomonas syringae group genomosp. 3 0 251701 species 1 1750 1 929 0 Pseudomonas viridiflava 33069 species 0 251695 species subgroup 1 5194 Pseudomonas syringae 0 317 species 1 5194 2 2056 0 251698 species subgroup 1108 1 47877 species 0 Pseudomonas amygdali 0 Pseudomonas savastanoi 29438 species 1 948 2775504 no rank 0 430 1 1 430 0 Pseudomonas sp. Lz4W 1206777 species 891 1 46257 species 0 Pseudomonas avellanae 196821 no rank 0 25505 30 1 831 Pseudomonas sp. FGI182 0 1259844 species 1415630 species 0 Pseudomonas sp. TKP 644 1 0 Pseudomonas sp. URMO17WK12:I11 species 1283291 1 1384 2083055 species 0 Pseudomonas sp. LH1G9 732 1 0 Pseudomonas sp. S-6-2 1931241 species 1 1201 0 Pseudomonas sp. HLS-6 species 2049589 1 977 0 Pseudomonas sp. GR 6-02 1659194 species 1 850 1 824 0 Pseudomonas sp. PONIH3 1636610 species 1 1199 0 Pseudomonas sp. ATCC 13867 species 1294143 1 1252 0 Pseudomonas sp. StFLB209 1028989 species species 1338689 Pseudomonas sp. JY-Q 0 832 1 1 724 Pseudomonas sp. NC02 0 2067572 species 0 Pseudomonas sp. SWI36 2083052 species 1 573 835 1 species 2083054 Pseudomonas sp. LG1D9 0 0 Pseudomonas sp. TCU-HL1 species 1856685 1 960 Pseudomonas sp. FDAARGOS_380 0 2018067 species 1 566 1 1455 0 Pseudomonas sp. CC6-YY-74 1930532 species Pseudomonas sp. MRSN12121 0 species 1611770 1 795 1 400 Pseudomonas sp. MYb193 0 1827300 species 0 Pseudomonas sp. CCOS 191 1649877 species 1 854 1500686 species Pseudomonas sp. Os17 0 885 1 species 1207075 0 Pseudomonas sp. UW4 569 1 1 469 0 Pseudomonas sp. XWY-1 2069256 species Pseudomonas sp. M30-35 0 species 1981174 1 1242 1001 1 69328 species 0 Pseudomonas sp. VLB120 1 1049 0 Pseudomonas sp. St29 1500687 species 0 Pseudomonas sp. DR 5-09 1534110 species 1 522 1 694 0 Pseudomonas sp. LPH1 1898684 species Pseudomonas sp. SWI6 0 2083051 species 1 515 1 671 Pseudomonas sp. SWI44 0 2083053 species 490 1 species 219572 0 Pseudomonas antarctica 361 1 1853130 species 0 Pseudomonas silesiensis 1 741 Pseudomonas cremoricolorata 0 species 157783 216142 species Pseudomonas rhizosphaerae 0 605 1 1 1079 0 Pseudomonas lurida species 244566 1853 1 species 930166 0 Pseudomonas brassicacearum 0 136846 species group 2 5838 74829 species 0 Pseudomonas balearica 725 1 5113 1 578833 species subgroup 0 Pseudomonas stutzeri 0 316 species 1 5113 676 1 312306 species Pseudomonas entomophila 0 6 19356 0 species group 136845 Pseudomonas mosselii 0 species 78327 1 1734 0 Pseudomonas putida 303 species 1 10139 47880 species 0 Pseudomonas fulva 2779 1 1527 1 species 47885 Pseudomonas oryzihabitans 0 1 708 0 Pseudomonas plecoglossicida 70775 species species 76759 0 Pseudomonas monteilii 2469 1 0 subfamily 351 3 3143 352 genus 19 0 Azotobacter 3143 1 3 Azotobacter vinelandii 0 354 species 1 1378 353 species 0 Azotobacter chroococcum 1746 1 0 Immundisolibacterales order 26 1934945 4 1 962 family 19 1934946 0 Immundisolibacteraceae 1 936 3 1934947 5 genus Immundisolibacter 0 917 1 2 1 912 0 Immundisolibacter cernigliae 1810504 species 1 257950 244 1118 order 91347 0 Enterobacterales 116 1 132490 Enterobacteriaceae 0 family 977 543 1 6832 3 18 genus 590 Salmonella 0 0 Salmonella enterica species 28901 1 5987 0 Salmonella bongori 54736 species 1 827 5 1 3744 0 Kosakonia 14 genus 1330547 species 208223 0 Kosakonia cowanii 1258 1 1 877 0 Kosakonia sacchari 1158459 species 996 1 species 283686 0 Kosakonia radicincitans 1 599 0 Kosakonia oryzae species 497725 742 1 genus 579 0 742 1 species 61648 0 Kluyvera intermedia 5 16592 1 0 Escherichia 561 genus 393 0 Escherichia fergusonii 564 species 1 1052 1 12400 0 Escherichia coli species 562 Escherichia albertii 0 208962 species 1 2235 species 1499973 Escherichia marmotae 0 512 1 14 16853 1 Citrobacter 0 544 genus 639 655 1 species 67824 Citrobacter farmeri 0 1 662 0 Citrobacter koseri species 545 1 2818 0 Citrobacter amalonaticus 35703 species 7 8366 0 1344959 species group Citrobacter werkmanii 0 species 67827 1 1372 1 589 0 Citrobacter freundii complex sp. CFNIH3 species 2077147 478 1 species 2077149 0 Citrobacter freundii complex sp. CFNIH9 1 1228 Citrobacter braakii 0 57706 species Citrobacter freundii complex sp. CFNIH4 0 2077148 species 1 684 0 Citrobacter freundii complex sp. CFNIH2 2066049 species 1 800 3215 1 species 546 0 Citrobacter freundii 2190 2 2644389 no rank 0 1920110 species 0 Citrobacter sp. CFNIH10 1008 1 1182 1 1702170 species Citrobacter sp. FDAARGOS_156 0 1523 1 67825 species 0 Citrobacter rodentium genus 15 1330545 0 Lelliottia 1 3198 4 696 1 species 1907578 0 Lelliottia jeotgali 914 1 species 69220 0 Lelliottia nimipressuralis 1573 1 61646 species 0 Lelliottia amnigena Cronobacter 0 413496 genus 90 8 6748 1 Cronobacter turicensis 0 413502 species 1 1088 species 413501 0 Cronobacter muytjensii 1084 1 976 1 species 535744 0 Cronobacter universalis species 28141 0 Cronobacter sakazakii 1151 1 1 584 0 Cronobacter malonaticus 413503 species 784 1 1163710 species Cronobacter condimenti 0 1 991 0 Cronobacter dublinensis 413497 species 5761 17 191675 no rank 0 0 clade 84563 17 5761 1 169 0 genus 1906657 0 Candidatus Doolittlea endobia species 1778262 1 169 792 1 1906661 genus 0 0 Candidatus Gullanella endobia species 1070130 1 792 1 300 0 clade 199891 species 1835721 0 secondary endosymbiont of Trabutina mannipara 300 1 genus 1906660 0 328 1 Candidatus Mikella endobia 0 1778264 species 1 328 0 1906659 genus 1 291 291 1 1778263 species Candidatus Hoaglandella endobia 0 0 146507 clade 4 963 159 1 134287 species 0 secondary endosymbiont of Heteropsylla cubana secondary endosymbiont of Ctenarytaina eucalypti 0 1199245 species 1 199 Candidatus Hamiltonella 0 12 genus 568987 2 1 605 593 1 138072 species Candidatus Hamiltonella defensa 0 0 1682492 genus 1 984 984 1 1410383 species 0 Candidatus Tachikawaea gelatinosa 1934 7 clade 84564 0 203804 genus 2 0 Candidatus Blochmannia 1934 1 7 101534 species 0 Candidatus Blochmannia pennsylvanicus 407 1 452 1 251542 species Candidatus Blochmannia chromaiodes 0 0 no rank 711328 2 573 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 1505596 species 1 207 species 1505597 0 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 366 1 251535 species 0 Candidatus Blochmannia vafer 198 1 Candidatus Blochmannia floridanus 0 species 203907 1 302 Raoultella 0 160674 genus 27 3 3994 1 1 1142 Raoultella planticola 0 species 575 Raoultella ornithinolytica 0 species 54291 1 2825 0 Pluralibacter 13 genus 1330546 3 1 3687 61647 species Pluralibacter gergoviae 0 2087 1 species 1334193 0 [Enterobacter] lignolyticus 1587 1 109 1 genus 401618 0 109 1 401619 species 0 Candidatus Riesia pediculicola no rank 36866 0 4196 5 891974 species 0 Plautia stali symbiont 676 1 Enterobacteriaceae bacterium ENNIH3 0 species 1920128 1 644 Enterobacteriaceae bacterium ENNIH2 0 1920109 species 1 504 1 1075 Enterobacteriaceae bacterium ENNIH1 0 2066051 species species 693444 Enterobacteriaceae bacterium strain FGI 57 0 1297 1 142 1 1048757 genus 0 1 142 0 Candidatus Moranella endobia 1048758 species 2787 1 4 620 466 genus 0 Shigella 623 species 0 Shigella flexneri 688 1 2629414 no rank 0 816 1 Shigella sp. PAMC 28760 0 1813821 species 1 816 0 Shigella dysenteriae 622 species 1 817 1 214 0 genus 409304 Candidatus Ishikawaella capsulata 0 species 168169 1 214 589 1 2 1335483 2 genus 0 Shimwellia 0 Shimwellia blattae 563 species 1 587 4 genus 158483 Cedecea 0 1 2892 2 158822 species 0 Cedecea neteri 2888 1 1 23108 22 genus 1583 547 0 Enterobacter 12 15817 0 species group 354276 1398 3 2757714 no rank 0 561 1 2027919 species Enterobacter cloacae complex bacterium 0 1 482 Enterobacter cloacae complex sp. ECNIH7 0 1915310 species 1 355 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 species 2077137 0 Enterobacter kobei species 208224 1 299 3 3953 1 Enterobacter hormaechei 0 158836 2479 species 1 878 Enterobacter cloacae complex 'Hoffmann cluster III' 0 1812934 subspecies Enterobacter xiangfangensis 0 subspecies 1296536 1 596 species 1812935 Enterobacter cloacae complex 'Hoffmann cluster IV' 0 465 1 61645 species 0 Enterobacter asburiae 2380 1 623 1 species 69218 Enterobacter cancerogenus 0 species 550 0 Enterobacter cloacae 6298 1 401 1 species 299767 Enterobacter ludwigii 0 0 2608935 no rank 9 5708 0 Enterobacter sp. R4-368 1166130 species 1 1236 1 556 0 Enterobacter sp. ODB01 1827481 species Enterobacter sp. CRENT-193 0 2051905 species 1 870 1 227 Enterobacter sp. HK169 0 species 1868135 species 399742 Enterobacter sp. 638 0 934 1 Enterobacter sp. SA187 0 1914861 species 1 821 1 619 0 Enterobacter sp. FY-07 1692238 species Enterobacter sp. Crenshaw 0 1977566 species 1 264 species 1560339 Enterobacter sp. E20 0 181 1 83654 152 genus Leclercia 0 3221 1 4 0 2627398 no rank 2 2367 0 Leclercia sp. LSNIH1 1920114 species 1 1645 722 1 1920116 species 0 Leclercia sp. LSNIH3 Leclercia adecarboxylata 0 83655 species 1 702 570 genus 573 Klebsiella 0 26104 1 10 0 Klebsiella variicola 244366 species 1 2731 1 1956 Klebsiella aerogenes 0 548 species 5171 1 species 571 Klebsiella oxytoca 0 573 species 0 Klebsiella pneumoniae 7463 1 1 1337 0 Klebsiella quasivariicola 2026240 species 3398 2 no rank 2608929 0 1327 1 1905288 species Klebsiella sp. LTGPAF-6F 0 1934254 species Klebsiella sp. M5al 0 2071 1 1 2037 0 Klebsiella michiganensis species 1134687 1438 1 1463165 species 0 Klebsiella quasipneumoniae 0 Pectobacteriaceae 1903410 family 31 20 19286 1 29 genus 84565 Sodalis 0 1 1542 5 species 1486991 0 Candidatus Sodalis pierantonius 450 1 Sodalis endosymbiont of Henestaris halophilus 0 species 1929246 1 179 0 Sodalis glossinidius species 63612 1 388 496 1 species 1239307 0 Sodalis praecaptivus 0 Dickeya genus 260 204037 6 1 8881 0 Dickeya zeae species 204042 1 2395 1 1493 0 Dickeya fangzhongdai species 1778540 species 1089444 Dickeya solani 0 2082 1 204039 species Dickeya dianthicola 0 1378 1 1 1273 0 Dickeya dadantii species 204038 2 1 812 Brenneria 0 2 genus 71655 species 1109412 0 Brenneria goodwinii 810 1 1 8020 6 genus 152 122277 0 Pectobacterium 1 1126 Pectobacterium atrosepticum 0 29471 species 2042057 species 0 Pectobacterium polaris 1569 1 1119 1 species 55208 Pectobacterium wasabiae 0 1905730 species Pectobacterium parmentieri 0 922 1 3132 1 species 554 Pectobacterium carotovorum 0 Erwiniaceae 0 family 63 1903409 27 1 25428 genus 51228 0 536 1 51229 species Wigglesworthia glossinidia 0 536 1 11 1 11981 Pantoea 0 genus 368 53335 1407 1 species 66269 0 Pantoea stewartii 2637 3 no rank 2630326 0 1 1108 Pantoea sp. PSNIH2 0 species 1484157 0 Pantoea sp. PSNIH1 species 1484158 1 612 592316 species 0 Pantoea sp. At-9b 917 1 Pantoea ananatis 0 species 553 1 1166 1 515 0 Pantoea rwandensis species 1076550 470934 species 0 Pantoea vagans 2580 1 1 837 0 Candidatus Pantoea carbekii species 1235990 1 1967 0 species group 1654067 Pantoea agglomerans 0 species 549 1 1967 504 1 1891675 species Pantoea alhagi 0 625 1 2 82986 genus 13 Tatumella 0 1 612 Tatumella citrea 0 species 53336 0 2100764 genus 2 2141 species 665913 Pantoea calida 0 1171 1 Pantoea gaviniae 0 species 665914 1 970 Erwinia 0 genus 187 551 8 1 5567 Candidatus Erwinia sp. ErCipseudotaxifoliae 0 1922217 species 1 683 0 Erwinia billingiae species 182337 1 1193 Erwinia gerundensis 0 species 1619313 1 1054 462 1 2622719 no rank 0 462 1 215689 species 0 Erwinia sp. Ejp617 0 Erwinia pyrifoliae 79967 species 1 522 species 338565 0 Erwinia tasmaniensis 502 1 964 1 species 552 0 Erwinia amylovora Buchnera 0 32199 2 genus 2 4515 1 Buchnera aphidicola 0 species 9 1 4513 3 1167 1 Budviciaceae 0 1903416 family 1 1166 1 2 82984 7 genus 0 Pragia Pragia fontium 0 82985 species 1 1159 0 Yersiniaceae 107 family 1903411 39 1 43268 2 1442 1 Gibbsiella 0 929812 genus 4 species 929813 Gibbsiella quercinecans 0 1438 1 629 369 genus Yersinia 0 15911 1 13 2653513 no rank 0 1219 1 1839800 species 0 Yersinia sp. FDAARGOS_228 1219 1 3305 1 species 29484 Yersinia frederiksenii 0 28152 species Yersinia kristensenii 0 1136 1 3449 1 species 630 0 Yersinia enterocolitica 0 Yersinia rohdei 29485 species 1 673 631 species 0 Yersinia intermedia 1230 1 0 Yersinia aleksiciae species 263819 1 598 29486 species Yersinia ruckeri 0 1058 1 3 2094 0 species group 1649845 0 Yersinia pestis 632 species 1 699 species 633 Yersinia pseudotuberculosis 0 976 1 1 419 Yersinia similis 0 species 367190 780 1 29483 species Yersinia aldovae 0 1039 genus 613 0 Serratia 1 22692 16 28151 species Serratia proteamaculans 0 932 1 0 no rank 2647522 8 7069 1 791 0 Serratia sp. AS13 species 768493 858 1 671990 species 0 Serratia sp. FGI94 1091 1 488142 species Serratia sp. SCBI 0 791 1 species 768490 0 Serratia sp. AS12 Serratia sp. SSNIH1 0 species 1758196 1 957 1 710 0 Serratia sp. MYb239 2033438 species Serratia sp. FS14 0 species 1327989 1 1115 1 756 Serratia sp. ATCC 39006 0 species 104623 1 5430 Serratia marcescens 0 species 615 1 1039 0 Serratia rubidaea 61652 species 61651 species 0 Serratia ficaria 1253 1 82996 species Serratia plymuthica 0 2757 1 0 Serratia fonticola 47917 species 1 2356 0 Serratia liquefaciens 614 species 1 817 4 1 2489 0 Rahnella 52 genus 34037 species 34038 0 Rahnella aquatilis 626 1 2 1811 0 no rank 2635087 1210 1 species 1805933 Rouxiella sp. ERMR1:05 0 0 Rahnella sp. Y9602 741091 species 1 601 0 Chania 1745211 13 genus 2 598 1 0 Chania multitudinisentens 1639108 species 1 585 0 Rouxiella 1565532 genus 1 29 451511 no rank 0 2694 2 Plesiomonas 0 702 8 genus 2 2694 1 0 Plesiomonas shigelloides 703 species 1 2686 14 1 12981 0 Hafniaceae family 22 1903412 2 1 938 Obesumbacterium 0 27 genus 82982 911 1 species 82983 0 Obesumbacterium proteus 3784 1 3 568 20 genus 0 Hafnia 2462 1 species 569 0 Hafnia alvei 1302 1 2621980 no rank 0 1302 1 1848580 species 0 Hafnia sp. CBA7124 8 1 8237 Edwardsiella 0 378 genus 635 0 Edwardsiella hoshinae 93378 species 1 816 509 1 species 67780 0 Edwardsiella ictaluri 922 1 species 1263550 Edwardsiella piscicida 0 Edwardsiella tarda 0 636 species 1 2420 no rank 2676541 0 2138 2 0 Edwardsiella sp. EA181011 1578828 species 1 1081 1650654 species 0 Edwardsiella sp. LADL05-105 1057 1 1 1054 0 Edwardsiella anguillarum species 1821960 0 Morganellaceae 25 family 1903414 22 1 19518 3971 1 4 29487 genus 33 Photorhabdus 0 species 291112 Photorhabdus asymbiotica 0 2027 1 574560 species 0 Photorhabdus temperata 1211 1 1 700 Photorhabdus luminescens 0 29488 species 586 genus 6 0 Providencia 5269 1 4 588 species 0 Providencia stuartii 1481 1 1554 1 126385 species Providencia alcalifaciens 0 0 Providencia rettgeri 587 species 1 2228 1 3754 6 36 genus 626 0 Xenorhabdus 351679 species 0 Xenorhabdus hominickii 618 1 Xenorhabdus doucetiae 0 351671 species 1 270 1 1229 Xenorhabdus nematophila 0 species 628 593 1 species 40577 0 Xenorhabdus poinarii species 40576 Xenorhabdus bovienii 0 1008 1 1 281 2 7 genus 637 0 Arsenophonus Arsenophonus symbiont of Lipoptena fortisetosa 0 species 634113 1 274 0 Proteus 583 genus 21 3 4319 1 1433 1 585 species 0 Proteus vulgaris 1 2865 0 Proteus mirabilis species 584 2 1899 1 0 Morganella 581 genus 29 1870 1 species 582 0 Morganella morganii 24 order 135618 Methylococcales 0 1 4399 12 11 1 4375 0 Methylococcaceae 30 family 403 Methylovulum 0 762296 1 genus 2 810 1 1 809 Methylovulum psychrotolerans 0 species 1704499 1 1969 5 29 genus 416 0 Methylomonas species 702114 0 Methylomonas koyamae 502 1 0 no rank 2608980 1 666 1727196 species 0 Methylomonas sp. DH-1 666 1 Methylomonas denitrificans 0 species 1538553 1 425 species 421 Methylomonas methanica 0 347 1 1 1025 2 genus 4 413 0 Methylococcus 1021 1 species 414 0 Methylococcus capsulatus 0 genus 39773 1 541 271065 species Methylomicrobium alcaliphilum 0 541 1 135622 order 244 Alteromonadales 0 81215 1 104 72275 54 family 0 Alteromonadaceae 22346 1 29 10 1 9348 0 Alteromonas 135 genus 226 0 Alteromonas naphthalenivorans species 715451 1 487 Alteromonas australica 0 589873 species 1 540 2351 3 2614992 no rank 0 443 1 species 2058133 Alteromonas sp. MB-3u-76 0 1214 1 1917158 species 0 Alteromonas sp. RW2A1 0 Alteromonas sp. Mac1 1777491 species 1 694 287094 species Alteromonas addita 0 736 1 1990 1 28108 species Alteromonas macleodii 0 1 1916 Alteromonas mediterranea 0 species 314275 0 Alteromonas stellipolaris species 233316 1 1193 1078 1 2 261825 2 genus Agarivorans 0 0 Agarivorans gilvus species 680279 1 1076 1751872 1 genus 0 Lacimicrobium 1634 1 2 species 1526571 Lacimicrobium alkaliphilum 0 1633 1 10 8585 1 0 Marinobacter 2742 58 genus 866 1 1420917 species Marinobacter salarius 0 no rank 83889 0 2361 3 0 Marinobacter sp. CP1 species 1671721 1 610 Marinobacter sp. BSs20148 0 490759 species 1 674 1749259 species 0 Marinobacter sp. LQ44 1077 1 1 822 0 Marinobacter adhaerens species 1033846 330734 species Marinobacter psychrophilus 0 487 1 1 1064 0 Marinobacter salinus 1874317 species 1973 1 2743 species 0 Marinobacter hydrocarbonoclasticus 1 954 Marinobacter similis 0 species 1420916 2 1312 0 89404 genus 2618684 no rank 0 367 1 1 367 0 Glaciecola sp. 4H-3-7+YE-5 983545 species 300231 species 0 Glaciecola nitratireducens 945 1 0 Paraglaciecola genus 1 1621534 2 1 335 326544 species Paraglaciecola psychrophila 0 334 1 0 Pseudoalteromonadaceae 17 family 267888 25 1 23946 0 Pseudoalteromonas 53246 235 genus 24 23929 1 Pseudoalteromonas translucida 0 species 166935 1 844 546 1 267375 species Pseudoalteromonas marina 0 1 852 Pseudoalteromonas phenolica 0 species 161398 1 1098 0 Pseudoalteromonas issachenkonii 152297 species 0 194690 no rank 5 4929 1 751 0 Pseudoalteromonas sp. 13-15 1761891 species 1334 1 species 1720343 Pseudoalteromonas sp. 1_2015MBL_MicDiv 0 447 1 1514074 species 0 Pseudoalteromonas sp. NC201 1 1497 Pseudoalteromonas sp. Bsw20308 0 283699 species 1 900 Pseudoalteromonas sp. SM9913 0 234831 species 314281 species Pseudoalteromonas tunicata 0 1328 1 43657 species Pseudoalteromonas luteoviolacea 0 755 1 Pseudoalteromonas atlantica 0 species 288 1 1525 1330 1 species 43662 0 Pseudoalteromonas piscicida 1562 1 species 1348114 0 Pseudoalteromonas piratica 28109 species 0 Pseudoalteromonas nigrifaciens 1074 1 species 394751 0 Pseudoalteromonas arctica 806 1 228 species Pseudoalteromonas haloplanktis 0 930 1 0 Pseudoalteromonas spongiae 298657 species 1 2343 0 Pseudoalteromonas rubra 43658 species 1 735 species 176102 0 Pseudoalteromonas agarivorans 464 1 1 497 Pseudoalteromonas espejiana 0 28107 species 1035 1 247523 species 0 Pseudoalteromonas aliena 1041 1 43659 species Pseudoalteromonas tetraodonis 0 Colwelliaceae 0 4 family 267889 9 1 6956 28228 genus 9 Colwellia 0 6550 1 6 species 1967665 0 Colwellia beringensis 1466 1 0 196834 no rank 3 4288 0 Colwellia sp. MT41 58049 species 1 1530 1 1993 Colwellia sp. PAMC 20917 0 1816218 species Colwellia sp. PAMC 21821 0 1816219 species 1 765 1 787 0 Colwellia psychrerythraea species 28229 2 genus 1518149 0 Thalassotalea 1 402 2 1763536 species 0 Thalassotalea crassostreae 400 1 Ferrimonadaceae 0 267892 3 family 3 1511 1 2 1 1508 0 Ferrimonas 13 genus 44011 Ferrimonas balearica 0 44012 species 1 1495 1 2891 4 family 11 267894 0 Psychromonadaceae Psychromonas 0 genus 29 67572 3 1 2880 1 1206 Psychromonas ingrahamii 0 357794 species 1645 1 2614957 no rank 0 species 314282 Psychromonas sp. CNPT3 0 1645 1 20172 1 25 267890 family 265 Shewanellaceae 0 24 1 19907 0 Shewanella genus 293 22 Shewanella putrefaciens 0 24 species 1 734 0 Shewanella frigidimarina species 56812 1 793 Shewanella oneidensis 0 species 70863 1 679 512 1 260364 species 0 Shewanella marisflavi 225848 species 0 Shewanella psychrophila 953 1 Shewanella violacea 0 species 60217 1 431 1327 1 271098 species 0 Shewanella halifaxensis 1 1806 0 Shewanella loihica species 359303 1065 1 70864 species Shewanella pealeana 0 Shewanella bicestrii 0 2018305 species 1 319 1 2255 0 Shewanella baltica species 62322 760 1 species 93973 Shewanella japonica 0 no rank 196818 0 3603 6 1 382 0 Shewanella sp. Pdp11 species 2059264 Shewanella sp. MR-7 0 species 60481 1 418 349 1 94122 species 0 Shewanella sp. ANA-3 1 874 0 Shewanella sp. WE21 2029986 species 593 1 species 60480 Shewanella sp. MR-4 0 1 987 Shewanella sp. W3-18-1 0 351745 species 271097 species Shewanella sediminis 0 826 1 1 982 0 Shewanella denitrificans species 192073 species 404011 0 Shewanella piezotolerans 640 1 60961 species 0 Shewanella woodyi 1180 1 749 1 60478 species Shewanella amazonensis 0 1070 2 267891 family 0 1070 1 2 58050 2 genus 0 Moritella 1 1068 0 Moritella viscosa species 80854 6 2079 1 Idiomarinaceae 0 267893 4 family 0 Idiomarina 135575 genus 5 5 2075 1 727 2 no rank 2614829 0 0 Idiomarina sp. X4 species 2055892 1 415 Idiomarina sp. OT37-5b 0 2100422 species 1 312 1 752 Idiomarina loihiensis 0 135577 species species 1096243 0 Idiomarina piscisalsi 591 1 0 no rank 118884 11 5782 genus 6 1608298 Thiolapillus 0 1 703 2 1 697 0 Thiolapillus brandeum species 1076588 1 1409 0 198346 clade 186490 species 0 Candidatus Baumannia cicadellinicola 1409 1 0 1524249 genus 1 394 1 394 0 Pseudohongiella spirulinae species 1249552 1 653 3 8 genus 655184 Candidatus Thioglobus 0 1 215 0 Candidatus Thioglobus autotrophicus 1705394 species 0 Candidatus Thioglobus singularis 1427364 species 1 430 1 791 0 349742 genus 1 791 0 Sedimenticola thiotaurini 1543721 species 0 clade 32036 3 1832 species 113267 0 Bathymodiolus septemdierum thioautotrophic gill symbiont 461 1 genus 1541743 0 543 1 1 543 Candidatus Ruthia magnifica 0 386487 species 828 1 410330 species Calyptogena okutanii thioautotrophic gill symbiont 0 29 42672 1 0 Aeromonadales 135624 order 169 Aeromonadaceae 0 family 296 84642 28 1 42503 225143 genus 1 0 Oceanisphaera 6154 1 3 1903694 species Oceanisphaera sp. AMac2203 0 298 1 0 Oceanisphaera profunda species 1416627 1 5855 Aeromonas 0 2141 genus 642 18 1 30781 1668 1 species 948519 0 Aeromonas rivipollensis 1 2625 0 Aeromonas salmonicida 645 species 694 1 species 648 0 Aeromonas caviae 1613 1 196024 species 0 Aeromonas dhakensis Aeromonas aquatica 0 species 558964 1 1330 Aeromonas hydrophila 0 species 644 1 6626 1440 1 652 species Aeromonas schubertii 0 Aeromonas media 0 651 species 1 1135 654 species 0 Aeromonas veronii 2646 1 no rank 257493 0 8863 8 Aeromonas sp. ASNIH1 0 1636606 species 1 992 1415 1 species 2033032 0 Aeromonas sp. CA23 Aeromonas sp. ASNIH4 0 species 1636609 1 1517 533 1 species 1636607 0 Aeromonas sp. ASNIH2 0 Aeromonas sp. CU5 species 2033033 1 1460 1758179 species Aeromonas sp. ASNIH5 0 785 1 species 1920107 0 Aeromonas sp. ASNIH7 776 1 0 Aeromonas sp. ASNIH3 species 1636608 1 1385 1523 1 2 43947 9 genus Tolumonas 0 43948 species 0 Tolumonas auensis 1514 1 1 1560 2 genus 16 129577 Oceanimonas 0 1544 1 2636315 no rank 0 Oceanimonas sp. GK1 0 511062 species 1 1544 Zobellella 0 genus 156 347533 2 1 2189 1 2033 0 Zobellella denitrificans 347534 species 0 Cellvibrionales order 44 1706369 28 1 12057 9 family 1706375 Spongiibacteraceae 0 1 1529 7 Spongiibacter 0 630749 genus 4 2 446 1 442 1 no rank 2631504 0 0 Spongiibacter sp. IMCC21906 1620392 species 1 442 427 1 2 1434050 genus 1 Zhongshania 0 426 1 species 1470434 0 Zhongshania aliphaticivorans 1084558 genus 1 Oceanicoccus 0 647 1 2 0 Oceanicoccus sagamiensis species 716816 1 646 3223 1 5 1706373 family 10 Microbulbiferaceae 0 genus 12 48073 Microbulbifer 0 1 3213 4 1 806 0 Microbulbifer thermotolerans species 252514 Microbulbifer agarilyticus 0 260552 species 1 1028 1769779 species Microbulbifer aggregans 0 1367 1 1 1282 4 7 family 1706372 0 Halieaceae 3 1275 1 Halioglobus 0 1217416 16 genus 930805 species 0 Halioglobus japonicus 547 1 1 712 0 Halioglobus pacificus species 930806 11 1 5979 Cellvibrionaceae 0 146 family 1706371 genus 84 10 0 Cellvibrio 1 3017 4 155077 species Cellvibrio japonicus 0 872 1 2 2061 0 2624793 no rank species 1987723 0 Cellvibrio sp. PSBB006 1042 1 1 1019 Cellvibrio sp. PSBB023 0 species 1945512 0 Teredinibacter 1 genus 2425 2 1 460 459 1 species 2426 Teredinibacter turnerae 0 1126 1 genus 2036021 0 1 1126 Agarilytica rhodophyticola 0 species 1737490 447467 3 genus Simiduia 0 700 1 2 697 1 447471 species 0 Simiduia agarivorans genus 316625 0 530 1 Saccharophagus degradans 0 86304 species 1 530 67 36494 1 0 Oceanospirillales 135619 order 294 0 Oceanospirillaceae family 182 135620 13 1 8628 0 Marinomonas genus 8 28253 4 1 3768 species 936476 0 Marinomonas posidonica 1737 1 0 Marinomonas mediterranea species 119864 1 602 1 1421 0 no rank 196814 400668 species 0 Marinomonas sp. MWYL1 1421 1 8 genus 48075 0 Marinobacterium 1 1742 2 1734 1 species 1821621 0 Marinobacterium aestuarii 2 1 1323 Thalassolituus 0 2 genus 187492 1 1321 Thalassolituus oleivorans 0 species 187493 188907 genus 1 Oleispira 0 1144 1 2 1 1143 0 Oleispira antarctica species 188908 Bacterioplanes 0 3 genus 1537406 2 1 469 0 Bacterioplanes sanyensis 1249553 species 1 466 30 1 18735 0 Halomonadaceae 220 family 28256 1056 1 2 42054 genus 7 Chromohalobacter 0 species 158080 0 Chromohalobacter salexigens 1049 1 198 3 114403 no rank 0 1 9 0 genus 114185 Candidatus Carsonella ruddii 0 114186 species 1 9 141 1 1495768 genus 0 1 141 0 Candidatus Evansia muelleri 1495769 species 235572 genus 0 48 1 Candidatus Portiera aleyrodidarum 0 species 91844 1 48 15 genus 404432 0 Salinicola 1 974 2 1 959 Salinicola tamaricis 0 species 1771309 Kushneria 0 504090 genus 3 3 2699 1 698828 species 0 Kushneria konosiri 1338 1 0 Kushneria marisflavi species 157779 1 1358 2745 genus 232 0 Halomonas 11888 1 15 0 Halomonas campaniensis 213554 species 1 278 0 Halomonas chromatireducens species 507626 1 814 species 475662 0 Halomonas beimenensis 2364 1 5038 8 2609666 no rank 0 Halomonas sp. 'Soap Lake #7' 0 species 1962264 1 391 1971364 species 0 Halomonas sp. GT 287 1 496 1 1504981 species 0 Halomonas sp. KO116 Halomonas sp. GFAJ-1 0 species 1118153 1 397 0 Halomonas sp. 1513 species 1883416 1 1462 Halomonas sp. R57-5 0 1610576 species 1 528 0 Halomonas sp. 'Soap Lake #6' 1949203 species 1 391 Halomonas sp. SF2003 0 2136172 species 1 1086 1897729 species 0 Halomonas aestuarii 1454 1 1 770 0 Halomonas huangheensis species 1178482 Halomonas hydrothermalis 0 species 115561 1 938 2 1 560 Halotalea 0 11 genus 376488 species 376489 Halotalea alkalilenta 0 549 1 204286 genus 5 Cobetia 0 1140 1 2 1 1135 0 Cobetia marina species 28258 0 family 191033 1 532 1 532 0 genus 141450 141451 species Oleiphilus messinensis 0 532 1 2214 1 6 1920240 family 5 0 Kangiellaceae 5 1 2209 Kangiella 0 16 genus 261963 species 1144748 0 Kangiella sediminilitoris 1056 1 327 1 species 261964 Kangiella koreensis 0 species 1561924 0 Kangiella profundi 576 1 234 1 species 914150 Kangiella geojedonensis 0 255527 8 family 0 Saccharospirillaceae 1167 1 5 Reinekea 0 genus 1 230494 2 1 599 Reinekea forsetii 0 1336806 species 1 598 2 genus 1445504 0 Gynuella 1 560 2 558 1 species 1445505 Gynuella sunshinyii 0 family 3 224379 Hahellaceae 0 1 744 3 2 741 1 0 Hahella 158481 genus 2 species 158327 Hahella chejuensis 0 739 1 224372 69 family 0 Alcanivoracaceae 4180 1 8 genus 37 59753 0 Alcanivorax 1 3220 6 0 Alcanivorax pacificus 1306787 species 1 903 0 Alcanivorax xenomutans 1094342 species 1 652 2638842 no rank 0 479 1 479 1 species 1113728 Alcanivorax sp. NBRC 101098 0 676 1 285091 species 0 Alcanivorax dieselolei species 59754 Alcanivorax borkumensis 0 473 1 891 1 genus 2025617 0 species 1917421 Ketobacter alkanivorans 0 891 1 135613 order 244 Chromatiales 0 23773 1 49 0 1676141 family 2 975 2 1 975 Wenzhouxiangella 0 genus 30 1676142 species 1579979 Wenzhouxiangella marina 0 945 1 2 280 0 family 1738654 1 genus 1738655 Woeseia 0 1 280 2 Woeseia oceani 0 1548547 species 1 279 1 1666 4 family 9 255526 0 Halothiobacillaceae 1 1657 3 25 genus 109262 Halothiobacillus 0 0 Halothiobacillus neapolitanus species 927 1 897 1 735 0 no rank 2636392 species 1860122 0 Halothiobacillus sp. LS2 735 1 451214 no rank 0 1007 2 1 1007 2 genus 16 1273155 0 Thiohalobacter 1 991 0 Thiohalobacter thiocyanaticus 585455 species 8853 1 18 72276 98 family Ectothiorhodospiraceae 0 6 1 4034 0 Thioalkalivibrio genus 150 106633 Thioalkalivibrio nitratireducens 0 186931 species 1 617 1 1560 0 Thioalkalivibrio sulfidiphilus 1033854 species 108010 species Thioalkalivibrio paradoxus 0 264 1 species 106634 Thioalkalivibrio versutus 0 889 1 554 1 no rank 2621013 0 Thioalkalivibrio sp. K90mix 0 species 396595 1 554 genus 8 1051 Ectothiorhodospira 0 1 866 2 0 2684909 no rank 1 858 1 858 0 Ectothiorhodospira sp. BSL-9 1442136 species genus 22 1335745 0 Spiribacter 1 1184 3 Spiribacter curvatus 0 species 1335757 1 706 456 1 species 1335746 Spiribacter salinus 0 2 1 820 Halorhodospira 0 18 genus 85108 1 802 Halorhodospira halophila 0 1053 species 1765964 genus 4 0 Acidihalobacter 524 1 2 0 Acidihalobacter prosperus 160660 species 1 520 133193 56 genus 0 Alkalilimnicola 1327 1 2 351052 species Alkalilimnicola ehrlichii 0 1271 1 9619 1 18 1046 72 family 0 Chromatiaceae 2 1077 1 0 Marichromatium 85076 genus 60 1017 1 species 37487 0 Marichromatium purpuratum 4 1 1184 0 Nitrosococcus 8 genus 1227 1 544 Nitrosococcus oceani 0 1229 species 1 218 Nitrosococcus halophilus 0 species 133539 species 473531 Nitrosococcus watsonii 0 414 1 415 1 2 156885 genus 4 0 Thioflavicoccus 411 1 species 80679 0 Thioflavicoccus mobilis 1 1070 2 genus 21 13724 0 Thiocystis Thiocystis violascens 0 species 73141 1 1049 2 471 1 Candidatus Nitrosoglobus 0 1980513 15 genus 456 1 1630141 species Candidatus Nitrosoglobus terrae 0 1 617 0 no rank 82569 617 1 species 1978339 0 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 Thiodictyon 53392 genus 10 2 3518 1 1 3508 Candidatus Thiodictyon syntrophicum 0 1166950 species 0 Allochromatium genus 5 85072 2 1 1195 1190 1 1049 species 0 Allochromatium vinosum 0 family 449719 2 1129 1 1129 2 genus 1 437504 Granulosicoccus 0 1128 1 species 437505 Granulosicoccus antarcticus 0 no rank 33811 0 1612 2 1 952 endosymbiont of unidentified scaly snail isolate Monju 0 species 1248727 660 1 83406 species 0 gamma proteobacterium HdN1 0 Nevskiales order 6 1775403 3 1 1004 997 1 2689614 family 0 997 1 genus 469322 0 1 997 0 Steroidobacter denitrificans species 465721 568386 family Sinobacteraceae 0 1 1 254 3 135615 order 0 0 Cardiobacteriaceae 1 family 868 3 1 254 2 253 1 0 Dichelobacter 869 8 genus 245 1 870 species 0 Dichelobacter nodosus 0 Xanthomonadales 135614 585 order 52 51759 1 1 8904 14 103 family 1775411 Rhodanobacteraceae 0 1062 1 2 323413 genus 22 Dokdonella 0 323415 species 0 Dokdonella koreensis 1040 1 0 Frateuria 70411 genus 10 2 1069 1 1059 1 species 81475 0 Frateuria aurantia 1484 1 2 242605 7 genus Luteibacter 0 Luteibacter rhizovicinus 0 species 242606 1 1477 454 1 genus 2233801 0 1 454 0 Xanthomonadales bacterium D13 2021234 species 231454 46 genus 0 Dyella 3523 1 4 1 1272 Dyella japonica 0 231455 species 1 1104 Dyella thiooxydans 0 445710 species 1 1101 0 Dyella jiangningensis 1379159 species 75309 genus 23 0 Rhodanobacter 1209 1 2 666685 species Rhodanobacter denitrificans 0 1186 1 0 Xanthomonadaceae 545 family 32033 37 1 42270 1 673 0 2370 genus 0 Xylella fastidiosa 2371 species 1 673 17 17261 1 0 Xanthomonas 338 1031 genus 56460 species 0 Xanthomonas vesicatoria 868 1 405 1 56459 species Xanthomonas vasicola 0 347 species Xanthomonas oryzae 0 1166 1 Xanthomonas campestris 0 339 species 1 2162 1 1163 0 Xanthomonas sacchari 56458 species species 456327 0 Xanthomonas euvesicatoria 955 1 1 1710 0 Xanthomonas translucens species 343 1 743 0 Xanthomonas albilineans 29447 species 0 Xanthomonas hortorum 56454 species 1 723 1 761 Xanthomonas perforans 0 442694 species 518 1 species 53413 Xanthomonas axonopodis 0 species group 643453 0 2921 2 Xanthomonas fuscans 0 species 366648 1 755 346 species Xanthomonas citri 0 2166 1 species 1985254 Xanthomonas phaseoli 0 1038 1 species 366650 Xanthomonas alfalfae 0 804 1 293 1 species 48664 0 Xanthomonas fragariae 5 5021 1 0 Lysobacter 68 genus 54 species 262324 Lysobacter gummosus 0 1004 1 species 69 0 Lysobacter enzymogenes 1047 1 species 84531 0 Lysobacter antibioticus 1463 1 435897 species Lysobacter capsici 0 1453 1 1 851 0 genus 83614 1 851 Luteimonas sp. 100111 0 2006110 species 2749 1 3 83618 genus 61 Pseudoxanthomonas 0 0 Pseudoxanthomonas spadix 415229 species 1 701 1 1987 0 Pseudoxanthomonas suwonensis species 314722 9 15170 1 Stenotrophomonas 0 40323 genus 520 196198 no rank 0 4282 4 1596 1 species 1827305 0 Stenotrophomonas sp. MYb57 1793721 species 0 Stenotrophomonas sp. KCTC 12332 819 1 species 1904944 0 Stenotrophomonas sp. LM091 935 1 932 1 2005046 species Stenotrophomonas sp. WZN-1 0 911 1 species 83617 0 Stenotrophomonas nitritireducens 1 1890 Stenotrophomonas acidaminiphila 0 128780 species 842 1 species 216778 0 Stenotrophomonas rhizophila 1 6725 0 995085 species group 0 Stenotrophomonas maltophilia 40324 species 1 6725 72273 order 5 Thiotrichales 0 24611 1 31 3 1829 0 family 135617 Thioploca 0 genus 2 40751 2 1 882 880 1 40754 species Thioploca ingrica 0 1021 genus 0 947 1 1 947 Beggiatoa leptomitoformis 0 288004 species Piscirickettsiaceae 0 13 family 135616 13 1 5413 1 1945 0 1237 genus Piscirickettsia salmonis 0 1238 species 1 1945 3 1 627 Methylophaga 0 genus 12 40222 Methylophaga nitratireducenticrescens 0 754476 species 1 388 0 Methylophaga frappieri 754477 species 1 227 Thiomicrospira 0 933 3 genus 3 398 1 147268 species 0 Thiomicrospira cyclica 174 1 1 221 0 Thiomicrospira aerophila species 92245 35 genus 34067 Cycloclasticus 0 1 2060 4 0 Cycloclasticus zancles 1329899 species 1 702 2621467 no rank 0 1323 2 655 1 728003 species 0 Cycloclasticus sp. PY97N 1 668 0 Cycloclasticus sp. P1 385025 species 0 genus 28884 1 370 species 39765 Hydrogenovibrio crunogenus 0 370 1 14 17364 1 Francisellaceae 0 34064 31 family 281 1 genus 1869285 0 594679 species Allofrancisella guangzhouensis 0 281 1 17052 1 12 262 genus 54 0 Francisella 1 1393 0 Francisella halioticida 549298 species 0 Francisella persica species 954 1 786 0 Francisella hispaniensis species 622488 1 773 0 Francisella philomiragia 28110 species 1 3386 2610885 no rank 0 2561 2 1 2044 Francisella sp. FSC1006 0 species 1547445 517 1 475375 species 0 Francisella sp. MA067296 1543 1 species 657445 0 Francisella noatunensis 1667 1 573570 species 0 Francisella sp. TX077310 1 1014 0 Francisella sp. TX077308 573569 species 263 species Francisella tularensis 0 2920 1 1 955 Francisella sp. CA97-1460 0 species 1542390 1 13603 20 order 2 118969 Legionellales 0 20 family 444 0 Legionellaceae 1 12310 15 11639 1 12 445 genus 26 0 Legionella species 1867846 Legionella clemsonensis 0 646 1 species 446 0 Legionella pneumophila 5113 1 species 28087 Legionella sainthelensi 0 968 1 Legionella fallonii 0 96230 species 1 765 1 795 0 Legionella lansingensis species 45067 679 1 species 66969 Legionella waltersii 0 1 548 0 Legionella spiritensis 452 species Legionella hackeliae 0 449 species 1 684 species 450 Legionella longbeachae 0 521 1 702 1 species 29423 Legionella oakridgensis 0 species 2005262 0 Legionella endosymbiont of Polyplax serrata 192 1 2 1 651 Tatlockia 0 1 genus 465 650 1 451 species Tatlockia micdadei 0 1 1291 4 1 family 118968 Coxiellaceae 0 0 genus 776 2 779 1 226 0 no rank 2676648 1 226 Coxiella endosymbiont of Amblyomma americanum 0 325775 species 777 species Coxiella burnetii 0 553 1 0 134284 no rank 1 511 1 511 0 Coxiella-like endosymbiont species 1592897 43 1 51708 0 Vibrionales order 14 135623 0 Vibrionaceae 641 382 family 42 51694 1 1096 1 genus 2042066 0 0 Paraphotobacterium marinum species 1755811 1 1096 2 1 403 Grimontia 0 1 genus 246861 1 402 0 Grimontia hollisae species 673 667 genus 662 0 Vibrio 1 39290 30 10 17899 0 species group 717610 0 species subgroup 2315253 2 2632 species 50719 Vibrio diabolicus 0 1452 1 150340 species 0 Vibrio antiquarius 1180 1 900 1 species 696485 Vibrio owensii 0 680 species Vibrio campbellii 0 2996 1 766224 species Vibrio jasicida 0 908 1 1 997 Vibrio rotiferianus 0 190895 species 2986 1 species 691 Vibrio natriegens 0 species 663 Vibrio alginolyticus 0 2315 1 species 670 0 Vibrio parahaemolyticus 2563 1 Vibrio harveyi 0 species 669 1 1602 Vibrio vulnificus 0 672 species 1 3303 no rank 2614977 0 2072 2 1 1139 Vibrio sp. EJY3 0 species 1116375 1 933 0 Vibrio sp. 2521-89 2014742 species 1407 1 species 553239 0 Vibrio breoganii 0 Vibrio anguillarum 55601 species 1 1131 1 698 Vibrio tasmaniensis 0 species 212663 species 687 Vibrio gazogenes 0 1110 1 1230 1 species 45658 Vibrio scophthalmi 0 1 476 0 species group 1891919 476 1 species 29498 Vibrio tubiashii 0 Vibrio cholerae 0 666 species 1 1299 species 2025808 0 Vibrio qinghaiensis 738 1 Vibrio nigripulchritudo 0 28173 species 1 692 0 Vibrio mimicus species 674 1 1161 species 1534743 0 Vibrio hyugaensis 445 1 1 571 0 Vibrio tritonius 1435069 species 1 980 0 Vibrio tapetis 52443 species 1 756 0 Vibrio fluvialis 676 species 1747 1 species 190893 Vibrio coralliilyticus 0 908 1 species 29494 Vibrio furnissii 0 genus 7 657 0 Photobacterium 1 5938 4 1295392 species 0 Photobacterium gaetbulicola 1836 1 Photobacterium profundum 0 74109 species 1 1907 species 38293 0 Photobacterium damselae 2188 1 511678 7 genus Aliivibrio 0 4585 1 4 40269 species 0 Aliivibrio salmonicida 1118 1 668 species Aliivibrio fischeri 0 1623 1 Aliivibrio wodanis 0 species 80852 1 1837 order 48 1692040 Acidiferrobacterales 0 1 1859 6 5 1811 1 0 Acidiferrobacteraceae 1692041 family 11 1744881 genus 15 0 Sulfuricaulis 978 1 2 0 Sulfuricaulis limicola species 1620215 1 963 0 Sulfurifustis 1692042 genus 17 2 822 1 1 805 0 Sulfurifustis variabilis species 1675686 30 51007 0 order 135625 51007 1 30 712 601 family 0 Pasteurellaceae 1 1631 2 genus 3 476528 0 Bibersteinia 0 Bibersteinia trehalosi 47735 species 1 1628 2 1 1319 0 Gallibacterium genus 1 155493 Gallibacterium anatis 0 species 750 1 1318 2736 1 2 2094023 genus 1 0 Glaesserella 2735 1 738 species Glaesserella parasuis 0 Aggregatibacter 0 genus 49 416916 3 1 4688 species 714 0 Aggregatibacter actinomycetemcomitans 1979 1 Aggregatibacter aphrophilus 0 732 species 1 2660 1 23876 6 genus 59 724 Haemophilus 0 15014 1 729 species Haemophilus parainfluenzae 0 0 [Haemophilus] ducreyi species 730 1 1322 1 1246 0 Haemophilus pittmaniae 249188 species 5065 1 727 species 0 Haemophilus influenzae 1170 1 no rank 2609962 0 712310 species 0 Haemophilus sp. oral taxon 036 1170 1 1 4349 4 216 genus 75984 0 Mannheimia 0 Mannheimia varigena species 85404 1 2044 1 1373 Mannheimia haemolytica 0 75985 species 0 no rank 2645054 1 716 716 1 1432056 species Mannheimia sp. USDA-ARS-USMARC-1261 0 1516 1 2 697331 genus 20 0 Basfia [Mannheimia] succiniciproducens 0 species 157673 1 1496 5 4098 1 Actinobacillus 0 713 37 genus 1201 1 716 species 0 Actinobacillus suis Actinobacillus pleuropneumoniae 0 species 715 1 1009 0 Actinobacillus succinogenes species 67854 1 555 1 1296 Actinobacillus equuli 0 species 718 2242 1 genus 214906 0 2242 1 731 species 0 Histophilus somni 0 genus 745 2 3951 1 2630 Pasteurella multocida 0 747 species species 754 0 Pasteurella dagmatis 1321 1 4 3022 0 1240482 order 4 3022 1 Orbaceae 0 1240483 family 8 1 1064 0 genus 1335631 1 1064 0 Frischella perrara 1267021 species Gilliamella 0 1193503 genus 2 2 1950 1 1948 1 1196095 species 0 Gilliamella apicola 1 2266 7 class 1 1807140 0 Acidithiobacillia 225057 order 19 0 Acidithiobacillales 2265 1 6 family 37 225058 0 Acidithiobacillaceae 1 2246 5 Acidithiobacillus 0 genus 52 119977 4 1 2209 685 1 920 species Acidithiobacillus ferrooxidans 0 0 Acidithiobacillus ferrivorans 160808 species 1 802 1 670 Acidithiobacillus caldus 0 33059 species 0 Oligoflexia 1553900 1 class 10 4440 1 6 order 213481 Bdellovibrionales 0 1 3198 5 4 1 3192 0 Bdellovibrionaceae family 4 213483 3188 1 3 958 genus 16 Bdellovibrio 0 Bdellovibrio exovorus 0 species 453816 1 712 1 2460 0 Bdellovibrio bacteriovorus 959 species 1241 4 order 2024979 0 2 682 0 family 263369 1 682 2 genus 1 146784 Bacteriovorax 0 species 960 Bacteriovorax stolpii 0 681 1 1 559 2 family 1 1652132 Halobacteriovoraceae 0 558 1 1652133 genus 0 97084 species Halobacteriovorax marinus 0 558 1 580370 class 0 1619 4 9 order 580371 0 Mariprofundales 1 1619 4 580372 1 family 0 Mariprofundaceae 1610 1 3 0 genus 377315 2 1609 1 812 Mariprofundus ferrinatatus 0 1921087 species 797 1 species 1921086 0 Mariprofundus aestuarium 522 class 28216 Betaproteobacteria 0 1 311157 349 no rank 119066 0 3088 11 30 1 1301080 genus 0 1 30 0 Candidatus Nasuia deltocephalinicola 1160784 species 746 1 2 327159 genus 30 Candidatus Accumulibacter 0 1 716 0 Candidatus Accumulibacter phosphatis 327160 species 189384 genus 0 57 1 1 57 Candidatus Tremblaya princeps 0 189385 species 6 2027 1 0 Kinetoplastibacterium 33055 genus 12 592 1 994695 species 0 Candidatus Kinetoplastibacterium galatii 1 561 Candidatus Kinetoplastibacterium desouzaii 0 994692 species species 994696 Candidatus Kinetoplastibacterium oncopeltii 0 178 1 319 1 species 33056 0 Candidatus Kinetoplastibacterium crithidii 0 Kinetoplastibacterium blastocrithidii 233181 species 1 365 228 1 genus 1381133 0 228 1 species 669502 0 Candidatus Profftella armatura Nitrosomonadales 0 order 77 32003 42 1 15720 family 19 206379 0 Nitrosomonadaceae 1 3680 12 1 1167 4 genus 4 35798 0 Nitrosospira 1 371 0 Nitrosospira lacus species 1288494 0 Nitrosospira briensis 35799 species 1 479 313 1 1231 species Nitrosospira multiformis 0 0 Nitrosomonas 914 genus 3 7 2494 1 2609265 no rank 0 687 2 0 Nitrosomonas sp. AL212 153948 species 1 408 0 Nitrosomonas sp. Is79A3 261292 species 1 279 480 1 species 916 0 Nitrosomonas eutropha species 44577 Nitrosomonas ureae 0 470 1 Nitrosomonas europaea 0 915 species 1 348 1 506 Nitrosomonas communis 0 44574 species 1561 1 5 90627 family 84 0 Gallionellaceae genus 9 96 0 Gallionella 1 805 2 Gallionella capsiferriformans 0 370405 species 1 796 34 genus 314343 Sideroxydans 0 1 672 2 0 Sideroxydans lithotrophicus species 63745 1 638 0 Thiobacillaceae 2008790 15 family 3 561 1 1 546 2 genus 12 919 0 Thiobacillus species 36861 Thiobacillus denitrificans 0 534 1 12 6335 1 Methylophilaceae 0 32011 family 38 1069 2 genus 1679002 0 species 1581557 0 Candidatus Methylopumilus planktonicus 649 1 Candidatus Methylopumilus turicensis 0 species 1581680 1 420 0 Methylophilus 18 genus 16 2 1 533 no rank 2630143 0 515 1 species 1662285 Methylophilus sp. TWE2 0 515 1 2930 1 3 81682 20 genus Methylovorus 0 Methylovorus glucosotrophus 0 species 266009 1 869 2041 1 no rank 2634027 0 1 2041 Methylovorus sp. MP688 0 887061 species 0 Methylobacillus genus 6 404 2 1 578 1 572 0 Methylobacillus flagellatus species 405 2 1187 0 359407 genus 0 Methylotenera versatilis 1055487 species 1 605 359408 species 0 Methylotenera mobilis 582 1 0 family 2772226 4 871 Sulfuricella 0 17 genus 935200 2 1 491 1 474 0 Sulfuricella denitrificans species 649841 Sulfuriferula 0 genus 10 1778653 2 1 380 1 370 0 2637784 no rank 1985873 species 0 Sulfuriferula sp. AH1 370 1 5 2635 1 Sterolibacteriaceae 0 2008793 67 family 2 1 1063 0 Methyloversatilis 14 genus 378210 2639971 no rank 0 1049 1 1 1049 Methyloversatilis sp. RAC08 0 1842540 species 1054211 genus 44 0 Sulfuritalea 1505 1 2 species 748811 0 Sulfuritalea hydrogenivorans 1461 1 0 Burkholderiales order 2831 80840 235 1 244466 43 49763 1 Alcaligenaceae 0 506 561 family 646 1 2 1472344 genus 1 0 Basilea 645 1 species 1472345 Basilea psittacipulmonis 0 Pusillimonas 0 305976 2 genus 2 425 1 423 1 2640016 no rank 0 1 423 0 Pusillimonas sp. T7-7 species 1007105 2 1292 1 Castellaniella 0 359336 80 genus 0 Castellaniella defragrans species 75697 1 1212 1 1738 2 14 genus 507 Alcaligenes 0 0 Alcaligenes faecalis 511 species 1 1724 0 Oligella 90243 genus 2 2 1136 1 1134 1 90245 species Oligella urethralis 0 genus 2 29574 0 Taylorella 1 1444 3 Taylorella equigenitalis 0 species 29575 1 998 444 1 84590 species 0 Taylorella asinigenitalis 17 1 21475 Bordetella 0 914 genus 517 0 Bordetella bronchialis species 463025 1 1578 Bordetella petrii 0 species 94624 1 887 1917 1 species 518 0 Bordetella bronchiseptica no rank 2630031 0 976 1 0 Bordetella sp. H567 1697043 species 1 976 species 103855 0 Bordetella hinzii 2354 1 519 species Bordetella parapertussis 0 1394 1 1003 1 1416803 species 0 Bordetella genomosp. 9 0 Bordetella trematum 123899 species 1 1714 35814 species 0 Bordetella holmesii 747 1 463024 species Bordetella genomosp. 6 0 999 1 species 463040 0 Bordetella genomosp. 13 1306 1 Bordetella pertussis 0 520 species 1 1131 633 1 species 521 Bordetella avium 0 1331258 species 0 Bordetella pseudohinzii 1305 1 1442 1 1416806 species Bordetella genomosp. 8 0 1175 1 463014 species Bordetella flabilis 0 Advenella 0 290425 5 genus 3 1895 1 302406 species 0 Advenella mimigardefordensis 1146 1 1 744 0 Advenella kashmirensis 310575 species 0 genus 1100891 1 833 species 643674 Paenalcaligenes hominis 0 833 1 1 16531 6 genus 682 222 0 Achromobacter 1 2869 Achromobacter spanius 0 217203 species species 85698 0 Achromobacter xylosoxidans 6797 1 217204 species Achromobacter insolitus 0 1489 1 2626865 no rank 0 1544 1 1 1544 0 Achromobacter sp. AONIH1 1758194 species 1 3150 Achromobacter denitrificans 0 species 32002 0 Orrella 1921582 20 genus 2 1787 1 1851544 species 0 Orrella dioscoreae 1767 1 0 224471 no rank 17 13313 0 Thiomonas 44 genus 32012 2 1 1771 Thiomonas intermedia 0 926 species 1 1727 2 1 1730 0 Roseateles genus 41 93681 1689 1 species 76731 0 Roseateles depolymerans 1521 1 2 212743 genus 88 0 Rhizobacter 1433 1 species 946333 0 Rhizobacter gummiphilus genus 60 28067 0 Rubrivivax 1 2079 2 1 2019 0 Rubrivivax gelatinosus species 28068 1 1356 2 genus 64 318147 0 Paucibacter no rank 2642959 0 1292 1 1292 1 1768242 species Paucibacter sp. KCTC 42545 0 0 Methylibium 44 genus 316612 2 1 943 0 Methylibium petroleiphilum 105560 species 1 899 1330 1 species 413882 0 [Polyangium] brachysporum 2 1317 1 Mitsuaria 0 65047 genus 65 1252 1 no rank 2648776 0 Mitsuaria sp. 7 0 species 1658665 1 1252 0 Leptothrix genus 42 88 2 1 1266 1 1224 0 Leptothrix cholodnii species 34029 Oxalobacteraceae 0 family 204 75682 29 1 29686 Collimonas 0 202907 genus 70 4 5226 1 1 1688 Collimonas fungivorans 0 species 158899 1721 1 species 279113 0 Collimonas pratensis 1747 1 279058 species 0 Collimonas arenae Janthinobacterium 0 29580 76 genus 7 6338 1 4 3593 0 2610881 no rank species 375286 Janthinobacterium sp. Marseille 0 365 1 994 1 species 1938606 Janthinobacterium sp. LM6 0 626 1 1236179 species Janthinobacterium sp. B9-8 0 1608 1 1644131 species Janthinobacterium sp. 1_2014MBL_MicDiv 0 55508 species 0 Janthinobacterium agaricidamnosum 1125 1 1 1544 Janthinobacterium svalbardensis 0 368607 species 6 8062 1 Herbaspirillum 0 963 289 genus 1819 1 species 964 Herbaspirillum seropedicae 0 0 Herbaspirillum hiltneri species 341045 1 1222 no rank 2624150 0 1209 1 2025949 species 0 Herbaspirillum sp. meg3 1209 1 species 92645 0 Herbaspirillum frisingense 1914 1 1 1609 Herbaspirillum rubrisubalbicans 0 80842 species 0 Herminiimonas 303379 genus 29 3 1170 1 626 1 species 1809410 Herminiimonas arsenitoxidans 0 Herminiimonas arsenicoxydans 0 204773 species 1 515 2 870 1 Oxalobacter 0 846 genus 24 species 847 Oxalobacter formigenes 0 846 1 6 7816 1 0 Massilia 149698 152 genus 0 Massilia putida species 1141883 1 1384 1 1140 Massilia sp. B2 0 2045208 species 3340 2 2609279 no rank 0 1 1377 0 Massilia sp. WG5 1707785 species 1678028 species Massilia sp. NR 4-1 0 1963 1 1 1800 Massilia sp. ZMN-3 0 2072590 species 83490 1 84 119060 573 family Burkholderiaceae 0 302 genus 48736 0 Ralstonia 1 10044 5 190721 species 0 Ralstonia insidiosa 1557 1 1 2160 Ralstonia pickettii 0 species 329 1 1212 0 Ralstonia mannitolilytica 105219 species 1 4813 0 Ralstonia solanacearum 305 species 44013 genus 27 Polynucleobacter 0 2048 1 4 1 493 0 Polynucleobacter duraquae species 1835254 species 576610 Polynucleobacter necessarius 0 414 1 1 1114 Polynucleobacter asymbioticus 0 species 576611 Pandoraea 0 93217 genus 165 10 7598 1 0 Pandoraea pnomenusa species 93220 1 851 1311 1 species 573737 Pandoraea oxalativorans 0 Pandoraea norimbergensis 0 species 93219 1 665 Pandoraea thiooxydans 0 445709 species 1 636 1 699 0 Pandoraea pulmonicola species 93221 0 Pandoraea vervacti 656178 species 1 768 species 93218 0 Pandoraea apista 675 1 1 978 Pandoraea faecigallinarum 0 species 656179 850 1 93222 species Pandoraea sputorum 0 2571159 genus 0 734 1 412963 species Paraburkholderia rhizoxinica 0 734 1 1 852 0 genus 1827195 852 1 758793 species Burkholderia sp. RPE64 0 1 10649 12 genus 331 1822464 0 Paraburkholderia 0 Paraburkholderia xenovorans 36873 species 1 812 0 Paraburkholderia phymatum species 148447 1 881 771 1 134537 species Paraburkholderia fungorum 0 1 781 0 Paraburkholderia sprentiae 948107 species 169430 species Paraburkholderia hospita 0 924 1 0 2615204 no rank 1 694 1926494 species Paraburkholderia sp. SOS3 0 694 1 0 Paraburkholderia phytofirmans species 261302 1 1258 0 Paraburkholderia caribensis species 75105 1 1590 1 656 0 Paraburkholderia phenoliruptrix 252970 species 1 779 0 Paraburkholderia terrae species 311230 1 1172 Paraburkholderia aromaticivorans 0 species 2026199 41 1 37452 0 Burkholderia genus 2080 32008 0 Burkholderia plantarii species 41899 1 891 species group 111527 0 4519 7 324 1 species 1637841 Burkholderia sp. MSMB0852 0 57975 species Burkholderia thailandensis 0 1006 1 934 1 342113 species 0 Burkholderia oklahomensis 1637837 species 0 Burkholderia sp. MSMB0266 534 1 Burkholderia mallei 0 species 13373 1 327 348 1 1637831 species 0 Burkholderia sp. MSMB617WGS 0 Burkholderia pseudomallei species 28450 1 1046 2189 1 species 28095 Burkholderia gladioli 0 no rank 2613784 0 6954 11 Burkholderia sp. PAMC 28687 0 1795874 species 1 474 645 1 640510 species 0 Burkholderia sp. CCGE1001 359 1 species 1795043 Burkholderia sp. PAMC 26561 0 789 1 species 1097668 Burkholderia sp. YI23 0 693 1 758796 species 0 Burkholderia sp. RPE67 1 629 Burkholderia sp. CCGE1003 0 640512 species 543 1 species 1468409 Burkholderia sp. 2002721687 0 Burkholderia sp. Bp5365 0 1740162 species 1 541 Burkholderia sp. KJ006 0 species 416344 1 709 538 1 species 1740163 Burkholderia sp. Bp7605 0 1034 1 species 1678678 Burkholderia sp. HB1 0 19 19113 0 87882 species group 1 2011 Burkholderia multivorans 0 87883 species species 488729 Burkholderia metallica 0 324 1 101571 species 0 Burkholderia ubonensis 1753 1 species 152480 0 Burkholderia ambifaria 735 1 Burkholderia territorii 0 1503055 species 1 322 1 531 0 [Pseudomonas] mesoacidophila species 265293 0 Burkholderia pyrrocinia 60550 species 1 373 species 488731 0 Burkholderia seminalis 372 1 Burkholderia cenocepacia 0 species 95486 1 3054 species 482957 0 Burkholderia lata 1002 1 0 Burkholderia pseudomultivorans 1207504 species 1 561 488447 species Burkholderia contaminans 0 679 1 1 606 0 Burkholderia stagnalis 1503054 species Burkholderia stabilis 0 species 95485 1 1014 3376 1 species 292 Burkholderia cepacia 0 Burkholderia dolosa 0 152500 species 1 337 1090 1 60552 species 0 Burkholderia vietnamiensis 505 1 species 488732 Burkholderia diffusa 0 species 488446 Burkholderia latens 0 468 1 species 337 0 Burkholderia glumae 1706 1 0 Cupriavidus genus 517 106589 9 1 13540 species 367825 0 Cupriavidus sp. USMAA1020 2003 1 2640874 no rank 0 3756 2 876364 species 0 Cupriavidus sp. USMAA2-4 1626 1 2130 1 1389192 species 0 Cupriavidus sp. USMAHM13 1506 1 248026 species Cupriavidus pinatubonensis 0 1 1061 Cupriavidus gilardii 0 82541 species species 68895 Cupriavidus basilensis 0 1524 1 1 2217 Cupriavidus necator 0 species 106590 956 1 species 119219 Cupriavidus metallidurans 0 1 62210 59 family 1163 80864 Comamonadaceae 0 1398 2 2490452 genus 0 1 693 Comamonadaceae bacterium B1 0 1458426 species 1 705 0 Comamonadaceae bacterium A1 1458425 species 219181 genus 31 0 Ottowia 2296 1 3 941 1 2645081 no rank 0 0 Ottowia sp. oral taxon 894 species 1658672 1 941 1324 1 species 2109914 0 Ottowia sp. KADR8-3 1 1038 2 genus 10 352450 0 Simplicispira 1028 1 species 2109915 0 Simplicispira sp. SC1-8 11525 1 9 12916 genus 497 0 Acidovorax Acidovorax citrulli 0 80869 species 1 1710 2684926 no rank 0 5583 4 1 1630 0 Acidovorax sp. KKS102 358220 species species 232721 Acidovorax sp. JS42 0 1512 1 Acidovorax sp. RAC01 0 species 1842533 1 1583 0 Acidovorax sp. T1 1858609 species 1 858 1090 1 553814 species Acidovorax sp. NA3 0 species 721785 0 Acidovorax ebreus 1224 1 1 1421 Acidovorax avenae 0 80867 species 5 1 7540 0 Variovorax 282 genus 34072 0 663243 no rank 2 2768 1795631 species 0 Variovorax sp. PAMC 28711 809 1 2126319 species Variovorax sp. PMC12 0 1959 1 species 436515 0 Variovorax boronicumulans 1293 1 3197 1 34073 species Variovorax paradoxus 0 4 5341 1 0 Comamonas 283 48 genus 940 1 species 225992 0 Comamonas kerstersii Comamonas serinivorans 0 1082851 species 1 1081 3272 1 species 285 Comamonas testosteroni 0 genus 10 52972 0 Polaromonas 1 2330 3 species 216465 0 Polaromonas naphthalenivorans 1185 1 0 2638319 no rank 1 1135 1 1135 Polaromonas sp. JS666 0 296591 species 1 1491 0 2678886 genus species 2116657 Melaminivora sp. SC2-7 0 1491 1 2 1 1547 0 Diaphorobacter 8 genus 238749 1539 1 1546149 species 0 Diaphorobacter polyhydroxybutyrativorans genus 40 47420 0 Hydrogenophaga 1 3582 4 Hydrogenophaga crassostreae 0 species 1763535 1 855 2 2687 0 no rank 2610897 species 795665 0 Hydrogenophaga sp. PBC 1417 1 1270 1 species 1842537 0 Hydrogenophaga sp. RAC07 genus 33 28065 Rhodoferax 0 1 4916 5 1 1256 0 Rhodoferax ferrireducens 192843 species 1484693 species Rhodoferax saidenbachensis 0 943 1 1875 1 species 1842727 Rhodoferax koreense 0 81479 species 0 Rhodoferax antarcticus 809 1 0 Ramlibacter 174951 genus 27 2 2903 1 2876 1 species 94132 Ramlibacter tataouinensis 0 Delftia 0 80865 genus 235 5 8732 1 0 Delftia tsuruhatensis 180282 species 1 2258 2002 1 species 80866 0 Delftia acidovorans 4237 2 2613839 no rank 0 2172 1 742013 species 0 Delftia sp. Cs1-4 species 1920191 0 Delftia sp. HK171 2065 1 8 genus 665874 0 Limnohabitans 1 1668 3 1660 2 2626134 no rank 0 Limnohabitans sp. 63ED37-2 0 1678128 species 1 796 Limnohabitans sp. 103DPR2 0 species 1678129 1 864 0 Melaminivora 16 genus 1649468 2 1 1293 no rank 2641902 0 1277 1 Melaminivora sp. SC2-9 0 2109913 species 1 1277 2 1 551 0 Candidatus Symbiobacter genus 4 1436289 species 1436290 Candidatus Symbiobacter mobilis 0 547 1 2 1 1944 0 Alicycliphilus genus 16 201096 179636 species 0 Alicycliphilus denitrificans 1928 1 2 1 952 0 Verminephrobacter 9 genus 364316 1 943 0 Verminephrobacter eiseniae species 364317 3173 2 no rank 80841 0 2284 1 1834205 species 0 Burkholderiales bacterium YL45 889 1 1469502 species Burkholderiales bacterium GJ-E10 0 22 15830 1 Rhodocyclales 0 206389 order 482 2008794 247 family Zoogloeaceae 0 10320 1 12 3700 1 5 12960 genus 141 Azoarcus 0 1 733 Azoarcus sp. SY39 0 species 2067960 0 no rank 2629479 2 2000 0 Azoarcus sp. KH32C 748247 species 1 975 198107 species 0 Azoarcus sp. CIB 1025 1 1 826 Azoarcus olearius 0 418699 species 6 6373 1 0 Thauera 33057 174 genus 885 1 species 96773 Thauera chlorobenzoica 0 0 no rank 2609274 2 2895 1 1267 Thauera sp. MZ1T 0 85643 species 2005884 species 0 Thauera sp. K11 1628 1 species 59405 0 Thauera aromatica 931 1 1 1488 0 Thauera humireducens species 1134435 0 Rhodocyclaceae 61 family 75787 6 1 4017 146937 genus 64 0 Azospira 1728 1 2 0 Azospira oryzae species 146939 1 1664 1254 1 2 551759 genus 24 0 Aromatoleum species 551760 Aromatoleum aromaticum 0 1230 1 no rank 75788 0 974 1 1 974 Rhodocyclaceae bacterium 0 species 1898103 3 1011 1 Azonexaceae 0 2008795 12 family 2 999 1 Dechloromonas 0 73029 genus 16 Dechloromonas aromatica 0 259537 species 1 983 2 1430 0 no rank 33809 1904640 species 0 Betaproteobacteria bacterium GR16-43 1131 1 1 299 0 beta proteobacterium CB 543913 species 1 30101 36 order 476 206351 0 Neisseriales 12629 1 13 1499392 family 391 0 Chromobacteriaceae 4 6875 0 no rank 90153 535 96 genus 0 Chromobacterium 6875 1 4 0 Chromobacterium violaceum species 536 1 1934 3032 1 species 1108595 0 Chromobacterium vaccinii 0 2641838 no rank 1 1813 1813 1 species 2059672 0 Chromobacterium sp. ATCC 53434 genus 10 885864 Jeongeupia 0 1 840 2 0 no rank 2619593 1 830 1906741 species Jeongeupia sp. USM3 0 830 1 Aquaspirillum 0 genus 9 187 2 1 1161 0 no rank 2620219 1 1152 1152 1 species 1938604 Aquaspirillum sp. LM1 0 2 1 2041 Pseudogulbenkiania 0 genus 19 568394 0 2642558 no rank 1 2022 species 748280 Pseudogulbenkiania sp. NH8B 0 2022 1 0 Laribacter 168470 genus 53 2 1321 1 1268 1 species 168471 0 Laribacter hongkongensis 16996 1 22 481 family 100 Neisseriaceae 0 1 12264 12 genus 326 482 0 Neisseria Neisseria lactamica 0 species 486 1 871 454 1 495 species 0 Neisseria elongata 0 2623750 no rank 2 2910 1 1309 Neisseria sp. 10022 0 1853276 species 1 1601 0 Neisseria sp. KEM232 species 655307 1 1384 0 Neisseria sicca species 490 1425 1 488 species 0 Neisseria mucosa 1853278 species Neisseria sp. 10023 0 954 1 0 Neisseria zoodegmatis 326523 species 1 813 0 Neisseria weaveri species 28091 1 394 485 species Neisseria gonorrhoeae 0 623 1 Neisseria meningitidis 0 487 species 1 2110 1285 1 3 59 35 genus Vitreoscilla 0 1 815 Vitreoscilla filiformis 0 63 species no rank 2627922 0 435 1 435 1 species 96942 Vitreoscilla sp. C1 0 1 591 0 1193515 genus 0 Snodgrassella alvi 1196083 species 1 591 1 genus 71 Simonsiella 0 1 909 2 1 908 Simonsiella muelleri 0 72 species 1 993 0 no rank 421605 993 1 2052837 species Neisseriaceae bacterium DSM 100970 0 2 1 854 Eikenella 0 genus 6 538 848 1 species 539 0 Eikenella corrodens 28211 1263 class Alphaproteobacteria 0 326438 1 546 order 75 766 Rickettsiales 0 1 13102 51 6593 27 family 775 0 0 tribe 33988 25 6416 1 1135 2 1 genus 69474 Orientia 0 Orientia tsutsugamushi 0 species 784 1 1134 genus 528 780 0 Rickettsia 1 5281 23 2 797 0 species group 114292 1 351 0 Rickettsia typhi 785 species 1 446 Rickettsia prowazekii 0 species 782 114295 no rank 0 366 1 337479 species Rickettsia endosymbiont of Bemisia tabaci 0 366 1 677 2 species group 1129742 0 1 447 0 Rickettsia bellii 33990 species Rickettsia canadensis 0 788 species 1 230 17 2913 0 species group 114277 Rickettsia rhipicephali 0 33992 species 1 70 Rickettsia slovaca 0 species 35794 1 215 129 1 species 786 Rickettsia akari 0 787 species 0 Rickettsia australis 439 1 2 1 species 226665 0 Rickettsia heilongjiangensis 269 1 33991 species 0 Rickettsia montanensis Rickettsia monacensis 0 species 109232 1 230 species 35790 Rickettsia japonica 0 1 1 1 18 0 Rickettsia philipii 1105106 species 1 211 Rickettsia africae 0 species 35788 608 1 species 42862 0 Rickettsia felis 104 1 species 33989 Rickettsia amblyommatis 0 1 119 Rickettsia parkeri 0 species 35792 47589 species Rickettsia peacockii 0 140 1 1 177 0 Rickettsia massiliae species 35791 1 78 0 Rickettsia rickettsii 783 species 103 1 species 781 Rickettsia conorii 0 177 1 2 2115980 genus 2 0 Candidatus Phycorickettsia 2115978 species Candidatus Phycorickettsia trachydisci 0 175 1 344 1 family 1328881 0 1 344 0 411566 genus 234827 species 0 Candidatus Midichloria mitochondrii 344 1 no rank 1699067 0 1437 1 1437 1 1528098 species Rickettsiales bacterium Ac37b 0 0 942 family 21 4653 8 2108 0 952 tribe genus 9 953 0 Wolbachia 1 2108 8 2099 7 no rank 2640676 0 297 1 species 163164 Wolbachia endosymbiont of Drosophila melanogaster 0 234 1 66084 species Wolbachia sp. wRi 0 77038 species Wolbachia endosymbiont of Drosophila simulans 0 1007 1 species 100901 Wolbachia endosymbiont of Onchocerca ochengi 0 302 1 0 Wolbachia endosymbiont of Onchocerca volvulus species 77551 1 43 1 84 0 Wolbachia endosymbiont of Cimex lectularius 246273 species 80849 species 0 Wolbachia endosymbiont of Brugia malayi 132 1 Neorickettsia 0 33993 genus 2 4 599 1 species 950 0 Neorickettsia risticii 209 1 0 Neorickettsia sennetsu species 951 1 270 Neorickettsia helminthoeca 0 33994 species 1 118 1670 1 6 943 4 genus Ehrlichia 0 no rank 106181 0 356 1 391036 species 0 Ehrlichia sp. HF 356 1 4 1310 0 106178 species group species 779 Ehrlichia ruminantium 0 449 1 1 373 0 Ehrlichia muris species 35795 species 945 0 Ehrlichia chaffeensis 234 1 0 Ehrlichia canis 944 species 1 254 0 768 genus 3 276 116 1 species 770 Anaplasma marginale 0 106179 species group 0 75 1 75 1 species 948 Anaplasma phagocytophilum 0 1 85 Anaplasma centrale 0 species 769 0 Rhodobacterales 506 order 204455 85 1 55574 31989 family 881 Rhodobacteraceae 0 55068 1 84 159345 1 genus 0 Roseibacterium 671 1 2 159346 species 0 Roseibacterium elongatum 670 1 genus 76 302485 0 Phaeobacter 1 5100 5 1956 1 221822 species 0 Phaeobacter inhibens 1405 1 species 60890 0 Phaeobacter gallaeciensis 540 1 1844006 species Phaeobacter porticola 0 1 1123 Phaeobacter piscinae 0 1580596 species 395 1 1759396 genus 0 no rank 2622455 0 395 1 395 1 species 1920883 Marivivens sp. JLT3646 0 0 genus 1649279 1 676 Ruegeria mobilis 0 species 379347 1 676 Ketogulonicigenium 0 genus 8 92944 3 1 1195 1 555 Ketogulonicigenium vulgare 0 92945 species 632 1 species 92947 Ketogulonicigenium robustum 0 no rank 58840 0 1544 2 1 598 Rhodobacteraceae bacterium 0 species 1904441 1 946 0 Rhodobacteraceae bacterium QY30 2033435 species 0 genus 74030 1 671 0 Roseovarius mucosus species 215743 1 671 0 Octadecabacter 53945 genus 3 4 1193 1 species 53946 0 Octadecabacter arcticus 213 1 474 1 1458307 species 0 Octadecabacter temperatus species 1217908 0 Octadecabacter antarcticus 503 1 74032 genus 2 Antarctobacter 0 677 1 2 species 74033 0 Antarctobacter heliothermus 675 1 Marinovum 0 367771 genus 14 2 1114 1 1 1100 Marinovum algicola 0 species 42444 12 1 genus 436357 0 Thalassococcus 58842 37 genus 0 Sagittula 1231 1 2 2624628 no rank 0 1194 1 1 1194 0 Sagittula sp. P11 2009329 species Pelagibaca 0 360528 5 genus 2 1703 1 0 Pelagibaca abyssi species 1250539 1 1698 0 genus 119541 1 317 441209 species Rhodobaca barguzinensis 0 317 1 0 Sulfitobacter 8 genus 60136 3 1 1840 1 1017 0 Sulfitobacter pseudonitzschiae species 1402135 0 no rank 196795 1 815 1917485 species Sulfitobacter sp. AM1-D1 0 815 1 2839 1 4 478070 61 genus 0 Labrenzia 1 1126 Labrenzia aggregata 0 187304 species 1652 2 no rank 2648686 0 Labrenzia sp. CP4 0 1674922 species 1 818 1 834 Labrenzia sp. VG12 0 species 2021862 1 630 2 genus 1 188905 Jannaschia 0 0 no rank 2645469 1 629 629 1 290400 species 0 Jannaschia sp. CCS1 0 genus 2211641 1 1020 245188 species Loktanella vestfoldensis 0 1020 1 0 genus 263377 2 3059 Thiobacimonas profunda 0 species 1229727 1 1434 1625 1 2640570 no rank 0 1792508 species 0 Yangia sp. CCB-MM3 1625 1 0 Ruegeria 10 genus 97050 3 1 2042 species 89184 0 Ruegeria pomeroyi 1383 1 1 649 0 no rank 2625375 1 649 Ruegeria sp. TM1040 0 species 292414 2 666 1 0 Thioclava 285107 genus 1 Thioclava nitratireducens 0 species 1915078 1 665 4 1 2549 0 Rhodovulum genus 65 34008 no rank 2631432 0 1354 2 624 1 308754 species 0 Rhodovulum sp. MB263 730 1 1564506 species 0 Rhodovulum sp. P5 species 35806 0 Rhodovulum sulfidophilum 1130 1 152 1 1579315 genus 0 species 1579316 Halocynthiibacter arcticus 0 152 1 594 1 2 1609958 genus 7 0 Confluentimicrobium 1 587 0 no rank 2643318 1 587 0 Confluentimicrobium sp. EMB200-NS6 1609966 species 1558 2 2433 genus 0 0 Roseobacter litoralis 42443 species 1 913 2434 species Roseobacter denitrificans 0 645 1 2 1 1031 Defluviimonas 0 genus 11 1097466 species 1335048 0 Defluviimonas alba 1020 1 1 684 0 309512 genus 1 684 0 Dinoroseobacter shibae 215813 species 58 genus 1060 0 Rhodobacter 1 4606 5 0 Rhodobacter capsulatus 1061 species 1 839 0 196779 no rank 2 1162 1 688 Rhodobacter sp. CZR27 0 species 2033869 Rhodobacter sp. LPB0142 0 species 1850250 1 474 0 Rhodobacter sphaeroides species 1063 1 2547 2 1 899 0 Leisingera 2 genus 191028 0 Leisingera methylohalidivorans 133924 species 1 897 genus 299261 0 725 1 725 1 299262 species 0 Tateyamaria omphalii 190 1 1284657 genus 0 species 1284658 Planktomarina temperata 0 190 1 9 1 8263 0 Paracoccus genus 301 265 1 856 Paracoccus sp. CBA4604 0 2065379 species 1 452 0 Paracoccus aminophilus 34003 species 1457 1 1077935 species Paracoccus zhejiangensis 0 1 1025 0 Paracoccus aminovorans 34004 species 1 1171 0 Paracoccus denitrificans species 266 246570 no rank 0 808 1 808 1 1529068 species Paracoccus sp. BM15 0 species 1945662 Paracoccus contaminans 0 829 1 147645 species Paracoccus yeei 0 1364 1 2355 1 5 875170 35 genus 0 Celeribacter Celeribacter ethanolicus 0 1758178 species 1 511 1 251 Celeribacter marinus 0 species 1397108 Celeribacter indicus 0 1208324 species 1 783 1 775 Celeribacter manganoxidans 0 species 1411902 0 Pannonibacter 227873 17 genus 2 1986 1 1 1969 0 Pannonibacter phragmitetus 121719 species 3 787 1 Parvularculales 0 255473 1 order family 3 255474 Parvularculaceae 0 1 786 2 783 1 genus 208215 0 0 Parvularcula bermudensis 208216 species 1 783 855 1 2 1191478 1 order Magnetococcales 0 854 1 1191479 family 0 854 1 162171 genus 0 1124597 species Magnetococcus marinus 0 854 1 0 Rhodospirillales 437 order 204441 65 1 46743 34 17831 1 0 Acetobacteraceae 433 486 family 17 genus 364409 Granulibacter 0 1 1956 2 Granulibacter bethesdensis 0 364410 species 1 1939 0 Kozakia genus 34 153497 2 1 387 1 353 0 Kozakia baliensis species 153496 1 274 2 9 genus 91914 0 Asaia 1 265 Asaia bogorensis 0 91915 species 0 Acetobacter 62 genus 434 8 1 4573 538 1 104102 species Acetobacter tropicalis 0 384 1 subgenus 151157 0 435 species Acetobacter aceti 0 384 1 Acetobacter persici 0 1076596 species 1 658 species 446692 0 Acetobacter senegalensis 575 1 Acetobacter pasteurianus 0 438 species 1 1749 287 1 65959 species Acetobacter pomorum 0 0 Acetobacter oryzifermentans species 1633874 1 320 0 Komagataeibacter 1434011 98 genus 5 2695 1 496 1 species 33995 Komagataeibacter europaeus 0 1 462 Komagataeibacter medellinensis 0 1177712 species Komagataeibacter nataicola 0 265960 species 1 547 Komagataeibacter xylinus 0 species 28448 1 1092 3 1 1046 Acidiphilium 0 55 genus 522 456 1 524 species 0 Acidiphilium cryptum 62140 species 0 Acidiphilium multivorum 535 1 1 619 0 1602345 genus Parasaccharibacter apium 0 species 1510841 1 619 2663 1 3 125216 136 genus Roseomonas 0 1135 1 2617492 no rank 0 1135 1 2018065 species 0 Roseomonas sp. FDAARGOS_362 species 257708 0 Roseomonas gilardii 1392 1 1 1776 3 genus 13 441 0 Gluconobacter 0 Gluconobacter oxydans 442 species 1 1238 525 1 318683 species 0 Gluconobacter albidus genus 2 320496 0 Neoasaia 1 386 2 1 384 Neoasaia chiangmaiensis 0 320497 species 970 1 2 89583 genus 8 0 Gluconacetobacter 1 962 Gluconacetobacter diazotrophicus 0 species 33996 30 28475 1 0 Rhodospirillaceae 41295 family 474 171436 genus 83 0 Tistrella 1615 1 2 1532 1 species 171437 Tistrella mobilis 0 genus 1263978 0 982 1 1263979 species 0 Candidatus Endolissoclinum faulkneri 982 1 191 1 2 1804663 3 genus Haematospirillum 0 1 188 0 Haematospirillum jordaniae 1549855 species 2411 1 3 1081 41 genus Rhodospirillum 0 1 1353 Rhodospirillum centenum 0 34018 species 1085 species 0 Rhodospirillum rubrum 1017 1 genus 15 1543704 Niveispirillum 0 1 1931 2 Niveispirillum cyanobacteriorum 0 species 1612173 1 1916 1182780 46 genus Magnetospira 0 717 1 2 0 2685734 no rank 1 671 species 1288970 Magnetospira sp. QH-2 0 671 1 1543705 5 genus 0 Nitrospirillum 2019 1 2 0 Nitrospirillum amazonense species 28077 1 2014 2124 1 3 168934 genus 21 0 Thalassospira 1015 1 species 220697 0 Thalassospira xiamenensis 0 Thalassospira sp. CSC3H3 species 2048283 1 1088 5328 1 5 13134 135 genus Magnetospirillum 0 1 1294 0 Magnetospirillum magneticum 84159 species 1490 1 species 55518 0 Magnetospirillum gryphiswaldense no rank 2617991 0 2409 2 1276 1 species 1639348 Magnetospirillum sp. ME-1 0 1663591 species Magnetospirillum sp. XM-1 0 1133 1 5 9979 1 Azospirillum 0 191 genus 233 1614 1 species 1226968 0 Azospirillum humicireducens 528244 species 0 Azospirillum thiophilum 1853 1 0 Azospirillum lipoferum species 193 1 3406 0 Azospirillum brasilense 192 species 1 2873 Pararhodospirillum 0 1612157 genus 12 2 704 1 Pararhodospirillum photometricum 0 1084 species 1 692 4097 8 no rank 82117 0 634 2 62654 clade 0 634 1 2 767891 1 genus Candidatus Puniceispirillum 0 633 1 species 767892 Candidatus Puniceispirillum marinum 0 0 Phreatobacter 36 genus 1632780 2 1 1567 1531 1 species 1868589 Phreatobacter sp. S-12 0 2 1145 1 Micavibrio 0 213485 15 genus 1 1130 0 Micavibrio aeruginosavorus species 349221 1 751 2 genus 4 991903 Polymorphum 0 991904 species 0 Polymorphum gilvum 747 1 Sphingomonadales 0 204457 269 order 82 44842 1 175 family 335929 Erythrobacteraceae 0 1 11608 22 2 1427 0 genus 2800686 1067 1 692370 species 0 Altererythrobacter dongtanensis 0 Altererythrobacter mangrovi 1982042 species 1 360 1 614 0 genus 2800685 614 1 543877 species Altererythrobacter marensis 0 0 genus 2800682 1 580 0 Altererythrobacter namhicola 645517 species 1 580 3 1050 1 0 Croceicoccus 1295327 genus 29 1348774 species Croceicoccus naphthovorans 0 528 1 1 493 Croceicoccus marinus 0 species 450378 0 2800681 genus 2 1151 0 Erythrobacter atlanticus 1648404 species 1 563 Erythrobacter gangjinensis 0 species 502682 1 588 genus 24 361177 0 Altererythrobacter 1 1710 4 Altererythrobacter ishigakiensis 0 species 476157 1 198 Altererythrobacter epoxidivorans 0 species 361183 1 461 1 1027 Altererythrobacter atlanticus 0 species 1267766 2800788 no rank 0 2517 6 3 839 1 Porphyrobacter 0 1111 genus 21 818 2 no rank 2683265 0 0 Porphyrobacter HT-58-2 2023229 species 1 482 1896196 species 0 Porphyrobacter sp. LM 6 336 1 0 Erythrobacter 1041 genus 38 3 1678 1 Erythrobacter litoralis 0 39960 species 1 1195 1 445 0 Porphyrobacter neustonensis species 1112 0 1855416 genus 2 2384 1 881 Erythrobacter seohaensis 0 species 266951 Erythrobacter flavus 0 192812 species 1 1503 59 1 32965 0 Sphingomonadaceae family 354 41297 1 806 2 genus 31 150203 Blastomonas 0 1 775 0 no rank 2626550 0 Blastomonas sp. RAC04 1842535 species 1 775 10 1 5578 Sphingopyxis 0 232 genus 165697 Sphingopyxis fribergensis 0 species 1515612 1 515 0 Sphingopyxis alaskensis 117207 species 1 376 1 335 0 Sphingopyxis terrae 33052 species 0 2614943 no rank 4 2723 1 277 Sphingopyxis sp. LPB0140 0 1913578 species 1 505 Sphingopyxis sp. QXT-31 0 1357916 species species 292913 0 Sphingopyxis sp. 113P3 1459 1 1866325 species 0 Sphingopyxis sp. MG 482 1 569 1 267128 species 0 Sphingopyxis granuli Sphingopyxis macrogoltabida 0 species 33050 1 828 1 1296 3 genus 52 1434046 0 Sphingorhabdus 2614947 no rank 0 1244 2 664 1 1806885 species 0 Sphingorhabdus sp. M41 580 1 2077182 species Sphingorhabdus sp. YGSMI21 0 1 528 0 2709685 genus 528 1 species 266812 0 Sphingorhabdus flavimaris 1 9613 15 genus 137 13687 Sphingomonas 0 513 1 1560345 species Sphingomonas panacis 0 Sphingomonas wittichii 0 812 species 160791 2 1 1514 1 702 Sphingomonas sp. DC-6 0 1283312 strain 0 no rank 196159 6 4349 1 417 0 Sphingomonas sp. KC8 1030157 species 0 Sphingomonas sp. Cra20 1327635 species 1 813 544 1 1961362 species 0 Sphingomonas sp. NIC1 628 1 745310 species 0 Sphingomonas sp. MM-1 1 961 0 Sphingomonas sp. LM7 1938607 species Sphingomonas sp. LK11 0 species 1390395 1 986 801 1 species 1549858 0 Sphingomonas taxi 1 417 Sphingomonas hengshuiensis 0 species 1609977 584 1 152682 species 0 Sphingomonas melonis 0 Sphingomonas sanxanigenens 397260 species 1 672 Sphingomonas koreensis 0 93064 species 1 626 0 Novosphingobium 165696 53 genus 5 2737 1 Novosphingobium resinovorum 0 158500 species 1 686 2644732 no rank 0 750 1 1 750 Novosphingobium sp. PP1Y 0 species 702113 48935 species 0 Novosphingobium aromaticivorans 437 1 811 1 205844 species Novosphingobium pentaromativorans 0 2 1338 1 0 Zymomonas 541 genus 3 1335 1 542 species Zymomonas mobilis 0 527 1 2685927 genus 0 species 1921510 Sphingomonas sp. JJ-A5 0 527 1 165695 181 genus Sphingobium 0 8591 1 15 species 76947 Sphingobium herbicidovorans 0 414 1 1 632 Sphingobium cloacae 0 120107 species 778 1 46429 species 0 Sphingobium chlorophenolicum 1 580 0 Sphingobium hydrophobicum 1673076 species 0 Sphingobium baderi 1332080 species 1 976 0 Sphingobium indicum 332055 species 1 533 1 627 0 Sphingobium yanoikuyae species 13690 332056 species Sphingobium japonicum 0 504 1 6 3366 0 2611147 no rank 580 1 species 1843368 0 Sphingobium sp. RAC03 1 588 Sphingobium sp. TKS 0 species 1315974 501 1 407020 species Sphingobium sp. MI1205 0 0 Sphingobium sp. YBL2 484429 species 1 536 709 1 627192 species Sphingobium sp. SYK-6 0 0 Sphingobium sp. EP60837 1855519 species 1 452 1 990 2 2 genus 1649486 0 Rhizorhabdus 1 988 0 Rhizorhabdus dicambivorans species 1850238 2 607 1 Citromicrobium 0 72173 genus 12 no rank 2630544 0 595 1 0 Citromicrobium sp. JL477 species 1634516 1 595 208 137936 1 0 Rhizobiales 356 1153 order 7693 1 19 45401 family 70 0 Hyphomicrobiaceae 2 816 1 0 Rhodoplanes 29407 47 genus no rank 2619116 0 769 1 species 674703 Rhodoplanes sp. Z2-YC6860 0 769 1 2 1 385 0 Filomicrobium genus 2 119044 1 383 0 Candidatus Filomicrobium marinum species 1608628 1068 2 genus 0 Rhodomicrobium 317 1 2 1069 species 0 Rhodomicrobium vannielii 315 1 13 genus 81 Hyphomicrobium 0 1 1992 4 0 Hyphomicrobium denitrificans 53399 species 1 561 no rank 2619925 0 650 1 0 Hyphomicrobium sp. MC1 717785 species 1 650 0 Hyphomicrobium nitrativorans species 1427356 1 768 853 1 2 59282 genus 22 0 Blastochloris species 1079 0 Blastochloris viridis 831 1 1 377 2 9 genus 1082930 0 Pelagibacterium 0 Pelagibacterium halotolerans species 531813 1 368 Devosia 0 genus 76 46913 4 1 2883 no rank 196773 0 2807 3 species 1643450 0 Devosia sp. H5989 923 1 1127 1 species 1736675 Devosia sp. A16 0 Devosia sp. I507 0 species 2083786 1 757 772 12 family Bartonellaceae 0 10935 1 18 773 94 genus Bartonella 0 10923 1 17 33047 species Bartonella vinsonii 0 332 1 210 1 803 species 0 Bartonella quintana 881 1 85701 species 0 Bartonella tribocorum 0 Bartonella henselae 38323 species 1 749 1 946 Bartonella ancashensis 0 species 1318743 6 4421 0 no rank 2645622 1933907 species 0 Bartonella sp. JB63 765 1 412 1 species 1933910 Bartonella sp. A1379B 0 species 1933904 Bartonella sp. WD16.2 0 1386 1 765 1 species 1933906 0 Bartonella sp. JB15 1 243 Bartonella sp. Raccoon60 0 species 1933912 850 1 species 515256 Bartonella sp. 1-1C 0 1 226 Bartonella bacilliformis 0 species 774 1 891 Bartonella grahamii 0 species 33045 373 1 388640 species 0 Bartonella australis Bartonella apis 0 1686310 species 1 1358 442 1 species 56426 Bartonella clarridgeiae 0 118882 family 20 Brucellaceae 0 6504 1 20 2248 1 14 234 849 genus 0 Brucella 1 38 0 Brucella suis species 29461 Brucella pinnipedialis 0 120576 species 1 182 Brucella microti 0 species 444163 1 21 179 1 120577 species 0 Brucella ceti 1 64 Brucella melitensis 0 29459 species no rank 2632610 0 522 4 Brucella sp. 09RB8471 0 species 1149952 1 109 Brucella sp. 09RB8910 0 1844051 species 1 158 1 34 0 Brucella sp. 2002734562 1891098 species 1885919 species 0 Brucella sp. 141012304 221 1 58 1 235 species Brucella abortus 0 146 1 981386 species 0 Brucella vulpis 10 1 species 236 Brucella ovis 0 36855 species 0 Brucella canis 179 1 1 4236 5 24 genus 528 0 Ochrobactrum 0 Ochrobactrum pseudogrignonense species 419475 1 1238 0 Ochrobactrum anthropi species 529 1 1243 987 1 571256 species Ochrobactrum pituitosum 0 0 Ochrobactrum sp. A44 species 271865 1 744 1 12381 20 family 76 69277 Phyllobacteriaceae 0 2 1 476 0 Phyllobacterium genus 3 28100 species 1867719 0 Phyllobacterium zundukense 473 1 2 1 1606 0 Aminobacter 9 genus 31988 1 1597 Aminobacter aminovorans 0 species 83263 449972 genus 11 Chelativorans 0 735 1 2 no rank 2643807 0 724 1 species 266779 0 Chelativorans sp. BNC1 724 1 245876 genus 10 Nitratireductor 0 1555 1 2 Nitratireductor basaltis 0 species 472175 1 1545 1 7275 9 genus 214 68287 0 Mesorhizobium no rank 325217 0 963 1 1 963 Mesorhizobium sp. WSM1497 0 species 278153 1 924 Mesorhizobium loti 0 381 species 898 1 39645 species Mesorhizobium ciceri 0 0 Mesorhizobium japonicum 2066070 species 1 766 1 743 Mesorhizobium sp. B7 0 species 1670800 995 1 536018 species Mesorhizobium australicum 0 904 1 71433 species Mesorhizobium amorphae 0 1 868 Mesorhizobium opportunistum 0 species 593909 Hoeflea 0 7 genus 274591 2 1 658 651 1 no rank 2614931 0 651 1 1620421 species 0 Hoeflea sp. IMCC20628 6 2188 0 119042 no rank Hartmannibacter 0 1572860 genus 3 2 873 1 870 1 1482074 species 0 Hartmannibacter diazotrophicus 0 Methyloceanibacter genus 13 1484898 2 1 537 1384459 species Methyloceanibacter caenitepidi 0 524 1 778 1 2 1734920 genus 28 0 Pseudorhodoplanes Pseudorhodoplanes sinuspersici 0 species 1235591 1 750 335928 family 74 0 Xanthobacteraceae 3640 1 7 152053 33 genus 0 Starkeya 812 1 2 921 species Starkeya novella 0 779 1 0 Xanthobacter genus 17 279 2 1 1403 1 1386 Xanthobacter autotrophicus 0 280 species 0 Azorhizobium 6 genus 44 2 1351 1 species 7 0 Azorhizobium caulinodans 1307 1 26 23045 1 0 Bradyrhizobiaceae 41294 family 292 1 489 2 5 genus 40136 Oligotropha 0 484 1 40137 species 0 Oligotropha carboxidovorans 1073 genus 215 Rhodopseudomonas 0 4560 1 2 species 1076 0 Rhodopseudomonas palustris 4345 1 85413 genus 51 Bosea 0 3843 1 5 2653178 no rank 0 2396 3 1 806 0 Bosea sp. AS-1 2015316 species 662 1 species 1792307 0 Bosea sp. PAMC 26642 928 1 1842539 species Bosea sp. RAC05 0 1396 1 1526658 species 0 Bosea vaviloviae 614 1 2 1649510 13 genus Variibacter 0 species 1333996 0 Variibacter gotjawalensis 601 1 0 Nitrobacter 911 genus 5 3 561 1 1 239 Nitrobacter winogradskyi 0 913 species 0 Nitrobacter hamburgensis species 912 1 317 374 genus 388 0 Bradyrhizobium 12686 1 11 Bradyrhizobium oligotrophicum 0 44255 species 1 1068 species 1355477 Bradyrhizobium diazoefficiens 0 2549 1 0 Bradyrhizobium icense species 1274631 1 1085 5964 6 2631580 no rank 0 1 1139 Bradyrhizobium sp. BTAi1 0 species 288000 Bradyrhizobium sp. 0 species 376 1 963 0 Bradyrhizobium sp. ORS 278 species 114615 1 984 1 1160 Bradyrhizobium sp. CCGE-LA001 0 species 1223566 829 1 115808 species Bradyrhizobium sp. ORS 285 0 1 889 Bradyrhizobium sp. SK17 0 species 2057741 0 Bradyrhizobium japonicum 375 species 1 1632 1584 1 6 31993 family 6 Methylocystaceae 0 0 Methylosinus genus 38 425 2 1 664 1 626 Methylosinus trichosporium 0 426 species 3 1 914 Methylocystis 0 genus 18 133 1 310 Methylocystis bryophila 0 species 655015 586 1 2625913 no rank 0 187303 species Methylocystis sp. SC2 0 586 1 family 32 2036754 Chelatococcaceae 0 1 1554 4 28209 68 genus 0 Chelatococcus 1522 1 3 1 938 0 no rank 2638111 1702325 species 0 Chelatococcus sp. CO-6 938 1 444444 species Chelatococcus daeguensis 0 516 1 1 15426 15 65 family 119045 Methylobacteriaceae 0 9 1 9798 Methylobacterium 0 genus 525 407 2615210 no rank 0 3300 3 955 1 species 925818 Methylobacterium sp. AMS5 0 1282 1 1479019 species 0 Methylobacterium sp. C1 1063 1 species 426117 0 Methylobacterium sp. 4-46 1022 1 114616 species 0 Methylobacterium nodulans Methylobacterium oryzae 0 334852 species 1 1177 Methylobacterium phyllosphaerae 0 species 418223 1 1186 species 31998 0 Methylobacterium radiotolerans 1535 1 270351 species 0 Methylobacterium aquaticum 1053 1 186650 13 genus Microvirga 0 1154 1 2 Microvirga ossetica 0 1882682 species 1 1141 2282523 genus 0 4409 3 Methylobacterium populi 0 species 223967 1 1281 835 1 29429 species 0 Methylobacterium zatmanii Methylobacterium extorquens 0 species 408 1 2293 7 3834 1 0 Aurantimonadaceae 255475 family 39 genus 120 293088 Martelella 0 1 3099 4 1227 1 1486262 species Martelella endophytica 0 1 835 0 2629616 no rank 1 835 0 Martelella sp. AD-3 686597 species species 293089 Martelella mediterranea 0 917 1 Aureimonas 0 414371 12 genus 2 696 1 684 1 no rank 2615206 0 684 1 1349819 species Aureimonas sp. AU20 0 1 972 5 2 family 45404 0 Beijerinckiaceae 0 Methylocella 120652 23 genus 2 627 1 1 604 0 Methylocella silvestris 199596 species 343 1 2 532 genus 4 Beijerinckia 0 533 species Beijerinckia indica 0 339 1 2 1 382 Rhodobiaceae 0 1 family 119043 381 1 genus 256616 0 0 Parvibaculum lavamentivorans 256618 species 1 381 Rhizobiaceae 0 436 family 82115 52 1 46645 2381 1 6 34019 genus 28 Liberibacter 0 0 Candidatus Liberibacter americanus 309868 species 1 378 437 1 34020 species 0 Candidatus Liberibacter africanus 498 1 34021 species 0 Candidatus Liberibacter asiaticus 669 1 species 1273132 0 Liberibacter crescens species 556287 0 Candidatus Liberibacter solanacearum 371 1 8266 10 no rank 227292 0 3 1 1752 Ensifer 0 genus 12 106591 Ensifer adhaerens 0 species 106592 1 1163 0 Ensifer sojae 716925 species 1 577 0 Sinorhizobium 28105 151 genus 7 6514 1 0 no rank 2613772 2 1389 436 1 species 794846 0 Sinorhizobium sp. CCBAU 05631 Sinorhizobium sp. RAC02 0 species 1842534 1 953 1 710 0 Sinorhizobium medicae species 110321 1341 1 382 species 0 Sinorhizobium meliloti 0 species group 663276 1 1678 1 1678 0 Sinorhizobium fredii species 380 1245 1 species 194963 Sinorhizobium americanum 0 0 Shinella genus 5 323620 2 1 1380 1375 1 no rank 2643062 0 1 1375 0 Shinella sp. HZN7 species 879274 0 no rank 227290 33 34182 1 1416 2 4 genus 1525371 Neorhizobium 0 1412 1 399 species 0 Neorhizobium galegae 227 genus 357 0 Agrobacterium 1 8614 7 1 835 0 Agrobacterium rhizogenes species 359 2 1535 0 2632611 no rank 813 1 species 1842536 Agrobacterium sp. RAC06 0 0 Agrobacterium sp. H13-3 species 861208 1 722 4970 2 1183400 species group 0 species 1176649 0 Agrobacterium fabrum 905 1 1 4065 Agrobacterium tumefaciens 0 358 species 1 1047 0 Agrobacterium vitis 373 species 1 24152 24 1261 genus 379 Rhizobium 0 1 1254 Rhizobium tropici 0 species 398 species 396 0 Rhizobium phaseoli 1418 1 0 2613769 no rank 18 10714 64 1 1703966 species 0 Rhizobium sp. N731 1 4 Rhizobium sp. N871 0 species 1703968 1 4 0 Rhizobium sp. N741 1703967 species 1 1 1703962 species 0 Rhizobium sp. N1341 0 Rhizobium sp. IE4771 1301032 species 1 626 Rhizobium sp. NT-26 0 species 1125847 1 503 2028343 species Rhizobium sp. 10195 0 1422 1 0 Rhizobium sp. Y9 1914541 species 1 931 Rhizobium sp. NXC24 0 2048897 species 1 962 1 64 Rhizobium sp. N1314 0 species 1703961 1 483 0 Rhizobium sp. NXC14 species 1981173 0 Rhizobium sp. IRBG74 species 424182 1 1056 Rhizobium sp. Kim5 0 species 2020311 1 684 924 1 1869170 species 0 Rhizobium sp. S41 1 620 0 Rhizobium sp. CIAT894 2020312 species 862 1 1703969 species 0 Rhizobium sp. N324 2020313 species Rhizobium sp. TAL182 0 87 1 1417 1 1571470 species Rhizobium sp. ACO-34A 0 species 29449 0 Rhizobium etli 3091 1 0 Rhizobium gallicum species 56730 1 1563 1 4851 0 Rhizobium leguminosarum species 384 Pelagibacterales 0 54526 order 1 8 2311 1 1423 1 5 1655514 4 family Pelagibacteraceae 0 0 198251 genus 2 913 Candidatus Pelagibacter ubique 0 species 198252 1 291 1 622 0 no rank 2647897 species 1002672 Candidatus Pelagibacter sp. IMCC9063 0 622 1 0 no rank 1655516 2 506 species 744985 alpha proteobacterium HIMB59 0 228 1 species 859653 alpha proteobacterium HIMB5 0 278 1 2 887 1 Candidatus Fonsibacter 0 2045213 1 genus 1 886 Candidatus Fonsibacter ubiquis 0 1925548 species Holosporales 0 order 68 1921002 5 1 2044 2100208 3 family Caedimonadaceae 0 720 1 2 717 1 1509243 genus 0 1 717 0 Candidatus Nucleicultrix amoebiphila species 1509244 family 1777752 0 151 1 0 genus 1521255 1 151 1 151 0 Candidatus Paracaedibacter acanthamoebae 91604 species 0 family 44746 1 1105 1 1105 0 204454 no rank 86106 species endosymbiont of Acanthamoeba sp. UWC8 0 1105 1 0 2800060 order 6 2205 6 2205 1 Hyphomonadaceae 0 69657 32 family 1 1245 3 4 genus 85 0 Hyphomonas 81032 species 0 Hyphomonas neptunium 473 1 768 1 no rank 2630699 0 0 Hyphomonas sp. Mor2 1906738 species 1 768 2723 1 genus Hirschia 0 928 1 2 2724 species 0 Hirschia baltica 927 1 order 2800059 0 873 2 2800061 family 0 873 2 Maricaulis 0 2 genus 74317 2 1 873 species 74318 Maricaulis maris 0 871 1 204458 320 order Caulobacterales 0 13806 1 20 0 Caulobacteraceae 76892 family 141 19 13486 1 7 1 4329 Brevundimonas 0 77 genus 41275 41276 species 0 Brevundimonas vesicularis 735 1 Brevundimonas subvibrioides 0 species 74313 1 670 2622653 no rank 0 2055 3 1 825 0 Brevundimonas sp. LM2 species 1938605 1 552 0 Brevundimonas sp. GW460-12-10-14-LB2 1827469 species 0 Brevundimonas sp. DS20 species 1532555 1 678 792 1 species 588932 Brevundimonas naejangsanensis 0 20 genus 8 0 Phenylobacterium 650 1 2 species 284016 Phenylobacterium zucineum 0 642 1 6 1 7016 0 Caulobacter 128 genus 75 0 no rank 2648921 1 1535 1535 1 366602 species Caulobacter sp. K31 0 species 69395 Caulobacter henricii 0 1331 1 1 1989 0 Caulobacter vibrioides 155892 species 69666 species Caulobacter mirabilis 0 860 1 species 88688 0 Caulobacter segnis 1173 1 genus 3 76890 0 Asticcacaulis 1 713 2 1 710 0 Asticcacaulis excentricus 78587 species no rank 81440 0 637 1 1759059 species Caulobacteraceae bacterium OTSz_A_272 0 637 1 68525 subphylum 0 190873 194 85943 1 69 29547 327 class 0 Epsilonproteobacteria 2020 1 4 235899 2 order Nautiliales 0 669 1 2795691 family 0 1 669 0 genus 269258 2624044 no rank 0 669 1 species 387092 Nitratiruptor sp. SB155-2 0 669 1 2 1349 0 224467 family 1 1349 2 genus 12 191291 0 Nautilia Nautilia profundicola 0 244787 species 1 1337 Campylobacterales 0 213849 2570 order 64 83596 1 0 2771472 family 4 2560 1 659 0 269260 genus Nitratifractor salsuginis 0 species 269261 1 659 265570 14 genus 0 Sulfurovum 1901 1 3 612 1 species 206403 Sulfurovum lithotrophicum 0 1275 1 2646778 no rank 0 species 387093 0 Sulfurovum sp. NBC37-1 1275 1 family 72293 0 7719 13 0 genus 843 1 809 species 844 0 Wolinella succinogenes 809 1 6910 1 12 209 1 genus 0 Helicobacter 1 116 Helicobacter acinonychis 0 212 species 732 1 no rank 2593540 0 732 1 222136 species 0 Helicobacter sp. MIT 01-6242 species 138563 Helicobacter cetorum 0 421 1 0 Helicobacter mustelae species 217 1 356 1 508 Helicobacter typhlonius 0 76936 species species 37372 0 Helicobacter bilis 484 1 1 2925 0 Helicobacter pylori species 210 0 Helicobacter himalayensis species 1591088 1 167 1 286 0 Helicobacter felis species 214 1 636 0 Helicobacter hepaticus species 32025 1 278 Helicobacter cinaedi 0 213 species family 2771471 0 1854 5 1 1478 3 5 genus 202746 Sulfurimonas 0 39766 species 0 Sulfurimonas denitrificans 715 1 1 758 0 Sulfurimonas autotrophica species 202747 2 376 1 0 Sulfuricurvum 286130 2 genus 1 374 Sulfuricurvum kujiense 0 148813 species Campylobacteraceae 0 3136 family 72294 41 1 68893 Sulfurospirillum 0 47 genus 57665 9 1 6682 species 194424 0 Sulfurospirillum halorespirans 330 1 no rank 2618290 0 3419 3 1094 1 1986224 species 0 Sulfurospirillum sp. SL2-1 1 1789 Sulfurospirillum sp. UCH001 0 species 1581011 536 1 220622 species 0 Sulfurospirillum sp. JPD-1 species 44674 Sulfurospirillum barnesii 0 909 1 1 1051 Sulfurospirillum deleyianum 0 65553 species 547 1 66821 species 0 Sulfurospirillum multivorans 379 1 species 366522 Sulfurospirillum cavolei 0 no rank 2321108 0 8054 5 1404 1 2321187 genus 0 0 Arcobacter sp. LPB0137 species 1850254 1 1404 3 1 4303 0 Arcobacter 19 genus 28196 Arcobacter nitrofigilis 0 28199 species 1 1911 1 2373 0 Arcobacter butzleri species 28197 1 2347 0 2321207 no rank species 944547 0 Arcobacter sp. L 2347 1 26 51021 1 Campylobacter 0 194 694 genus species 488546 Campylobacter peloridis 0 2022 1 0 Campylobacter hominis species 76517 1 1111 Campylobacter gracilis 0 824 species 1 310 4088 4 no rank 2593542 0 1 1194 Campylobacter sp. RM16704 0 species 1500960 595 1 1660076 species Campylobacter sp. RM12175 0 0 Campylobacter sp. RM6137 species 1660073 1 1157 1142 1 1660074 species 0 Campylobacter sp. RM8964 Campylobacter helveticus 0 species 28898 1 258 260714 species Campylobacter insulaenigrae 0 1441 1 Campylobacter hyointestinalis 0 species 198 1 1255 1 1034 0 Campylobacter iguaniorum 1244531 species 1754 1 species 199 Campylobacter concisus 0 201 species 0 Campylobacter lari 3418 1 species 200 Campylobacter curvus 0 978 1 399 1 species 522485 Campylobacter avium 0 Campylobacter coli 0 195 species 1 15044 species 196 Campylobacter fetus 0 1879 1 species 1031542 Campylobacter volucris 0 593 1 1340 1 species 497724 0 Campylobacter subantarcticus 1793 1 206 species Campylobacter sputorum 0 1 999 Campylobacter lanienae 0 species 75658 1146 1 827 species 0 Campylobacter ureolyticus 1 6455 Campylobacter jejuni 0 197 species species 1965231 0 Campylobacter pinnipediorum 2294 1 Campylobacter cuniculorum 0 species 374106 1 716 197 class 28221 0 Deltaproteobacteria 1 104930 125 19 1 8833 0 Desulfobacterales 56 order 213118 Desulfobulbaceae 0 213121 family 11 9 4378 1 2 1231 1 0 Desulfotalea 109168 genus 1 1230 1 species 84980 0 Desulfotalea psychrophila 1 1295 2 genus 5 893 Desulfobulbus 0 1 1290 Desulfobulbus sp. ORNL 0 species 1986146 0 Desulfurivibrio genus 7 427922 2 1 1145 0 Desulfurivibrio alkaliphilus species 427923 1 1138 0 Desulfocapsa 53318 genus 2 2 696 1 species 65555 Desulfocapsa sulfexigens 0 694 1 4399 1 9 213119 family 39 Desulfobacteraceae 0 1 2081 3 genus 13 896 Desulfococcus 0 0 Desulfococcus oleovorans species 181663 1 1262 Desulfococcus multivorans 0 897 species 1 806 28222 genus 0 530 1 species 28223 0 Desulfobacula toluolica 530 1 0 Desulfatibacillum 218207 3 genus 2 1001 1 1 998 0 Desulfatibacillum alkenivorans 259354 species 0 Desulfobacterium 2295 genus 1 2 748 1 1 747 Desulfobacterium autotrophicum 0 species 2296 1 35212 38 848 order 29 Myxococcales 0 26 27220 0 suborder 80811 Myxococcaceae 0 31 family 83 9 13691 1 Corallococcus 0 108 genus 83461 3 1 4259 species 184914 Corallococcus coralloides 0 2226 1 1925 1 species 35 Myxococcus macrosporus 0 32 genus 570 Myxococcus 0 9349 1 5 1 1695 Myxococcus hansupus 0 species 1297742 species 83455 Myxococcus stipitatus 0 1865 1 0 Myxococcus xanthus species 34 1 1632 1 3587 Myxococcus fulvus 0 species 33 39 family 206 0 Archangiaceae 7424 1 9 genus 41 42 Cystobacter 0 1 1771 2 1730 1 species 43 Cystobacter fuscus 0 0 Melittangium 20 genus 44 2 1 1908 1 1888 Melittangium boletus 0 83453 species 7 genus 40 Stigmatella 0 1 1508 2 1 1501 0 Stigmatella aurantiaca species 41 40 genus 47 0 Archangium 1 2031 2 Archangium gephyra 0 48 species 1 1991 12 family 1524213 Vulgatibacteraceae 0 1 605 3 593 1 2 1524214 11 genus Vulgatibacter 0 species 1391653 0 Vulgatibacter incomptus 582 1 24 family 1524215 Anaeromyxobacteraceae 0 1 5500 5 168 genus 161492 0 Anaeromyxobacter 1 5476 4 2620896 no rank 0 2478 2 1 1229 Anaeromyxobacter sp. Fw109-5 0 404589 species 1249 1 species 447217 0 Anaeromyxobacter sp. K 1 2830 0 Anaeromyxobacter dehalogenans 161493 species 0 224462 suborder 3 1923 Kofleriaceae 0 15 family 224464 3 1 1923 162027 17 genus 0 Haliangium 1908 1 2 1891 1 80816 species Haliangium ochraceum 0 5221 8 suborder 80812 0 821 1 3 1055686 4 family 0 Sandaracinaceae Sandaracinus 0 19 genus 1055688 2 1 817 1 798 Sandaracinus amylolyticus 0 species 927083 49 24 family 0 Polyangiaceae 4400 1 5 39643 29 genus 0 Sorangium 3112 1 2 Sorangium cellulosum 0 56 species 1 3083 1264 1 2 50 genus 1 Chondromyces 0 1263 1 species 52 Chondromyces crocatus 0 1 31639 24 378 order 213115 Desulfovibrionales 0 1 family 213117 Desulfohalobiaceae 0 1 535 2 1 534 0 genus 45662 0 Desulfohalobium retbaense 45663 species 1 534 2560 1 4 213116 66 family 0 Desulfomicrobiaceae Desulfomicrobium 0 898 genus 19 3 2494 1 Desulfomicrobium baculatum 0 species 899 1 1598 1 877 Desulfomicrobium orale 0 species 132132 0 Desulfovibrionaceae 194924 family 262 17 28166 1 1 1672 0 2794998 genus 1672 1 880 species 0 Desulfovibrio salexigens 4 1 6297 0 Pseudodesulfovibrio 38 genus 2035811 1841 1 species 182210 0 Pseudodesulfovibrio aespoeensis 2061 1 57320 species 0 Pseudodesulfovibrio profundus 2357 1 1716143 species Pseudodesulfovibrio indicus 0 0 genus 2582840 1 1416 1 1416 0 Desulfovibrio africanus species 873 1 1025 0 41707 genus 0 Lawsonia intracellularis 29546 species 1 1025 872 108 genus Desulfovibrio 0 17494 1 9 2593640 no rank 0 908 1 Desulfovibrio sp. G11 0 631220 species 1 908 516 1 1725232 species Candidatus Desulfovibrio trichonymphae 0 Desulfovibrio piger 0 species 901 1 3376 Desulfovibrio magneticus 0 184917 species 1 2067 876 species Desulfovibrio desulfuricans 0 2789 1 2259 1 44742 species Desulfovibrio fairfieldensis 0 Desulfovibrio alaskensis 0 species 58180 1 1072 4399 1 881 species 0 Desulfovibrio vulgaris 34 order 213462 Syntrophobacterales 0 1 3016 10 1 678 3 4 family 213465 0 Syntrophobacteraceae 674 1 2 29526 3 genus 0 Syntrophobacter 671 1 119484 species Syntrophobacter fumaroxidans 0 2304 1 6 213468 family 8 Syntrophaceae 0 0 Desulfomonile 2357 genus 1 2 1012 1 1011 1 2358 species Desulfomonile tiedjei 0 0 60892 genus 1 743 Desulfobacca acetoxidans 0 species 60893 1 743 541 1 2 43773 genus 3 Syntrophus 0 0 Syntrophus aciditrophicus species 316277 1 538 Desulfurellales 0 213113 order 6 5 1480 1 Desulfurellaceae 0 117942 12 family 4 1474 1 0 84404 genus 1 524 Hippea maritima 0 84405 species 1 524 Desulfurella 0 4 genus 33001 2 1 938 Desulfurella acetivorans 0 species 33002 1 934 4 1560 1 Desulfarculales 0 453227 23 order 3 1537 1 Desulfarculaceae 0 453228 family 13 18 genus 453229 0 Desulfarculus 1 1524 2 1506 1 species 453230 0 Desulfarculus baarsii 69541 order 379 Desulfuromonadales 0 22993 1 24 9 6759 1 Desulfuromonadaceae 0 213421 family 146 3 1 2718 0 Desulfuromonas genus 43 890 1693 1 2614637 no rank 0 1 1693 0 Desulfuromonas sp. DDH964 1823759 species 0 Desulfuromonas soudanensis species 1603606 1 982 77 genus 18 0 Pelobacter 1 3895 5 1 1660 0 Pelobacter propionicus 29543 species species 19 Pelobacter carbinolicus 0 799 1 1 517 0 2620299 no rank Pelobacter sp. SFB93 0 species 1842532 1 517 species 29542 Pelobacter acetylenicus 0 842 1 0 Geobacteraceae 153 family 213422 14 1 15855 11 14122 1 0 Geobacter 28231 249 genus 1292 1 28232 species Geobacter metallireducens 0 species 1203471 0 Geobacter daltonii 547 1 1 702 0 Geobacter uraniireducens 351604 species Geobacter lovleyi 0 313985 species 1 1819 2 3634 0 no rank 2627627 0 Geobacter sp. M18 443143 species 1 1497 1 2137 0 Geobacter sp. M21 443144 species species 1340425 0 Geobacter anodireducens 1488 1 0 Geobacter sulfurreducens species 35554 1 1270 1 1923 Geobacter pickeringii 0 345632 species 1 1198 0 Geobacter bemidjiensis species 225194 0 Geoalkalibacter 2 genus 392332 2 1 1580 Geoalkalibacter subterraneus 0 483547 species 1 1578 2 669 0 phylum 1930617 class 3 1962850 Calditrichae 0 1 669 2 666 1 order 1962852 0 0 family 1962854 1 666 0 187144 genus 1 666 species 187145 Caldithrix abyssi 0 666 1 0 40117 phylum 14 4691 Nitrospira 0 12 class 203693 14 1 4691 Nitrospirales 0 39 order 189778 13 1 4679 Nitrospiraceae 0 189779 17 family 12 4640 1 Leptospirillum 0 3 genus 179 4 1 1156 0 species group 655606 1 201 1 201 Leptospirillum ferrooxidans 0 180 species species group 261385 0 338 1 Leptospirillum sp. Group II 'CF-1' 0 1660083 species 1 338 614 1 species group 261386 0 Leptospirillum ferriphilum 0 178606 species 1 614 2 genus 28261 0 Thermodesulfovibrio 1 1096 2 1 1094 Thermodesulfovibrio yellowstonii 0 28262 species 1234 21 genus 0 Nitrospira 2371 1 5 0 Candidatus Nitrospira inopinata species 1715989 1 273 1 830 Nitrospira moscoviensis 0 species 42253 656 1 330214 species 0 Nitrospira defluvii species 1325564 Nitrospira japonica 0 591 1 9 10403 0 phylum 200930 class 38 68337 Deferribacteres 0 1 10403 9 0 Deferribacterales 8 order 191393 8 1 10365 1 10357 7 family 7 191394 0 Deferribacteraceae 1 1655 2 genus 3 53572 Deferribacter 0 species 197162 Deferribacter desulfuricans 0 1652 1 1 1331 0 117999 genus 118000 species Denitrovibrio acetiphilus 0 1331 1 1 genus 545865 0 Calditerrivibrio 1 6935 2 species 477976 Calditerrivibrio nitroreducens 0 6934 1 2351 genus 0 429 1 429 1 species 2352 Flexistipes sinusarabici 0 35580 90 1783257 clade 0 4506 3 256845 phylum 0 1 4506 3 class 21 1313211 0 Lentisphaeria 4485 1 2 278082 1105 order Victivallales 0 no rank 1674876 0 3380 1 1 3380 0 Victivallales bacterium CCUG 44730 species 2094242 1 12414 25 phylum 8 74201 Verrucomicrobia 0 1 5356 11 class 68 414999 Opitutae 0 7 1 4830 Opitutales 0 order 80 415000 6 1 4750 0 Opitutaceae 30 family 134623 2 1 697 Opitutus 0 7 genus 178440 690 1 species 107709 Opitutus terrae 0 1 1883 0 278955 no rank species 794903 0 Opitutaceae bacterium TAV5 1883 1 genus 10 1961799 Lacunisphaera 0 1 2140 2 species 1838286 Lacunisphaera limnophila 0 2130 1 415001 8 order Puniceicoccales 0 458 1 3 2 450 0 family 415002 0 Coraliomargarita genus 12 442430 2 1 450 438 1 species 395922 0 Coraliomargarita akajimensis 3793 1 6 203494 class 15 Verrucomicrobiae 0 0 Verrucomicrobiales 48461 8 order 5 3778 1 1647988 family 12 Akkermansiaceae 0 3770 1 4 3758 1 3 239934 26 genus Akkermansia 0 239935 species 0 Akkermansia muciniphila 2861 1 1679444 species 0 Akkermansia glycaniphila 871 1 2 2813 0 no rank 417295 Verrucomicrobia bacterium 0 species 2026799 1 1688 1125 1 1637999 species Verrucomicrobia bacterium IMCC26134 0 1 128 0 class 134549 128 1 134550 genus 0 1 128 0 no rank 2648876 1 128 0 Candidatus Xiphinematobacter sp. Idaho Grape 1704307 species Methylacidiphilae 0 1955630 2 class 4 316 1 12 order 717963 0 Methylacidiphilales 1 314 3 302 2 717964 family 0 302 2 511745 genus 0 0 Methylacidiphilum fumariolicum 591154 species 1 195 species 511746 0 Methylacidiphilum infernorum 107 1 21 3768 0 phylum 204428 0 Chlamydiia class 11 204429 21 1 3768 1674 1 6 1963360 11 order 0 Parachlamydiales 1 411 0 92712 family 411 1 genus 34093 0 0 Simkania negevensis 83561 species 1 411 0 family 92714 1 176 1 176 0 71666 genus 176 1 71667 species Waddlia chondrophila 0 1076 1 3 92713 family 1 0 Parachlamydiaceae 0 83551 genus 1 647 species 83552 0 Parachlamydia acanthamoebae 647 1 1 428 0 282132 genus 0 Candidatus Protochlamydia naegleriophila 389348 species 1 428 1 order 51291 Chlamydiales 0 1 2083 14 1 2082 13 1 family 809 0 Chlamydiaceae 12 2081 0 no rank 1113537 2081 1 12 810 9 genus 0 Chlamydia 0 Chlamydia pneumoniae species 83558 1 399 1 173 Chlamydia psittaci 0 species 83554 0 Chlamydia caviae 83557 species 1 66 Chlamydia pecorum 0 85991 species 1 85 1 676 0 Chlamydia felis 83556 species 107 1 83555 species Chlamydia abortus 0 species 83559 Chlamydia suis 0 111 1 0 Chlamydia trachomatis 813 species 1 63 1457141 species 0 Chlamydia avium 62 1 0 Chlamydia gallinacea species 1457153 1 236 83560 species Chlamydia muridarum 0 94 1 134625 phylum 0 876 5 Kiritimatiellae 0 class 1 1921781 5 1 876 4 875 1 0 Kiritimatiellales 1921782 2 order 873 1 3 1921783 family 5 Kiritimatiellaceae 0 1921784 4 genus Kiritimatiella 0 868 1 2 0 Kiritimatiella glycovorans species 1307763 1 864 0 phylum 203682 36 14016 25 11025 1 Planctomycetia 0 203683 class 78 order 2691356 0 2940 7 1763524 9 family Isosphaeraceae 0 2940 1 7 1 1171 2 genus 14 1763521 0 Paludisphaera 1 1157 Paludisphaera borealis 0 species 1387353 750 1 2 466152 genus 4 0 Singulisphaera Singulisphaera acidiphila 0 466153 species 1 746 2 1010 1 Isosphaera 0 127 6 genus 1004 1 species 128 Isosphaera pallida 0 3 422 0 2691355 order 422 1 3 1914233 1 family 0 Gemmataceae 2 421 1 Gemmata 0 113 genus 5 1 416 0 no rank 2622970 1 416 0 Gemmata sp. SH-PL17 1630693 species 11 1 6071 0 Planctomycetales 167 order 112 Planctomycetaceae 0 126 family 12 10 5904 1 1 453 2 genus 9 1649480 Planctopirus 0 1 444 Planctopirus limnophila 0 120 species 1 2190 3 16 genus 118 Planctomyces 0 0 no rank 2648843 2 2174 1636152 species Planctomyces sp. SH-PL62 0 1485 1 689 1 species 1632864 0 Planctomyces sp. SH-PL14 1649490 4 genus 0 Rubinisphaera 336 1 2 119 species 0 Rubinisphaera brasiliensis 332 1 Fuerstia 0 1936111 genus 1 2 2913 1 1 2912 Fuerstia marisgermanicae 0 species 1891926 0 order 2691354 3 1514 0 2691358 family 1 1090 1090 1 genus 1676125 0 Thermogutta terrifontis 0 1331910 species 1 1090 family 2691357 0 424 2 197 1 genus 123 0 197 1 125 species Pirellula staleyi 0 genus 265488 0 227 1 0 Rhodopirellula baltica 265606 species 1 227 4 980 0 class 2517206 order 7 1127829 0 Candidatus Brocadiales 1 980 4 3 1 973 0 Candidatus Brocadiaceae family 43 1127830 1 930 2 1 genus 380738 0 Candidatus Kuenenia 1 929 0 Candidatus Kuenenia stuttgartiensis species 174633 7 2011 1 0 Phycisphaerae 666505 13 class 0 2483366 order 2 883 family 2483367 0 883 2 883 2 genus 2483368 0 0 Phycisphaerae bacterium ST-PulAB-D4 species 1941349 1 546 1 337 0 Phycisphaerae bacterium L21-RPul-D3 1940790 species 4 1 1115 Phycisphaerales 0 order 37 666506 1 1078 3 family 4 666507 0 Phycisphaeraceae 1 1074 2 genus 13 666508 0 Phycisphaera 0 Phycisphaera mikurensis 547188 species 1 1061 2 722 0 2138240 phylum 0 class 2138243 2 722 0 order 2138246 2 722 722 1 2 2138247 family 1 0 Coprothermobacteraceae 1 721 0 genus 68335 Coprothermobacter proteolyticus 0 species 35786 1 721 0 clade 1783270 362 6457556 68336 clade 0 6451050 347 16249 21 1090 phylum 0 21 1 16249 0 Chlorobia 76 class 191410 16173 1 20 191411 132 order Chlorobiales 0 19 1 16041 0 Chlorobiaceae 409 family 191412 0 Chlorobaculum 256319 24 genus 4 3831 1 1762 1 species 274539 Chlorobaculum parvum 0 1 799 Chlorobaculum limnaeum 0 species 274537 Chlorobaculum tepidum 0 species 1097 1 1246 0 274493 no rank 7 8147 5 4967 1 Chlorobium 0 1091 3 genus 1 1171 0 Chlorobium phaeovibrioides species 1094 1 1234 Chlorobium chlorochromatii 0 species 337090 species 1092 0 Chlorobium limicola 1119 1 1440 1 1096 species 0 Chlorobium phaeobacteroides 2 3180 0 1099 genus Pelodictyon luteolum 0 species 1100 1 1754 1426 1 species 34090 0 Pelodictyon phaeoclathratiforme 1101 genus 29 Prosthecochloris 0 3388 1 5 2678 3 no rank 2632826 0 species 281093 0 Prosthecochloris sp. GSB1 1132 1 1 878 0 Prosthecochloris sp. CIB 2401 species 1868325 668 1 1974213 species Prosthecochloris sp. HL-130-GSB 0 1 681 Prosthecochloris aestuarii 0 species 1102 100715 genus 11 0 Chloroherpeton 266 1 2 1 255 Chloroherpeton thalassium 0 species 100716 2580 6 1134404 phylum 0 2580 1 6 795747 class 18 0 Ignavibacteria 0 Ignavibacteriales 795748 63 order 5 2562 1 0 family 1334117 2 884 Melioribacter 0 1134403 genus 2 2 884 1 0 Melioribacter roseus 1134405 species 1 882 Ignavibacteriaceae 0 3 family 795749 2 1 1615 795750 genus 0 1612 1 0 Ignavibacterium album species 591197 1 1612 0 Bacteroidetes 205 phylum 976 320 1 6432221 1 5854627 68 class 203 200643 0 Bacteroidia 0 Bacteroidales 171549 order 1595 59 5844194 1 5 24163 0 family 2005520 6095 1 1784836 genus 0 1 6095 0 Fermentimonas caenicola 1562970 species 2 1 8106 Proteiniphilum 0 19 genus 294702 8087 1 1642647 species Proteiniphilum saccharofermentans 0 2 1 9962 Petrimonas 0 196 genus 307628 1 9766 0 Petrimonas mucosa species 1642646 89564 1 3 2005519 family 4 0 Barnesiellaceae genus 39 397864 Barnesiella 0 1 89560 2 1 89521 0 Barnesiella viscericola species 397865 3 8333 1 Paludibacteraceae 0 2005523 2 family 2 8331 1 0 Paludibacter 346096 genus 4 1 8327 0 Paludibacter propionicigenes species 185300 0 333046 no rank 5 2335261 0 Candidatus Azobacteroides genus 2 511434 2 1 1662 0 Candidatus Azobacteroides pseudotrichonymphae species 511435 1 1660 genus 909656 0 2333599 3 species 821 0 Bacteroides vulgatus 1878287 1 1 93539 0 Bacteroides salanitronis species 376805 1 361773 Bacteroides dorei 0 357276 species 7 1 336996 Tannerellaceae 0 63 family 2005525 375288 genus 63 Parabacteroides 0 316617 1 3 1 121765 Parabacteroides distasonis 0 species 823 1 194789 0 no rank 2649774 0 Parabacteroides sp. CT06 species 2025876 1 194789 3 1 20316 Tannerella 0 15 genus 195950 1 8508 0 no rank 2620507 species 712710 Tannerella sp. oral taxon HOT-286 0 8508 1 0 Tannerella forsythia species 28112 1 11793 185291 no rank 0 3177 1 1400053 species Bacteroidales bacterium CF 0 3177 1 22323 1 4 171551 family 37 Porphyromonadaceae 0 3 22286 1 0 Porphyromonas 836 genus 23 Porphyromonas gingivalis 0 species 837 1 13083 28123 species Porphyromonas asaccharolytica 0 9180 1 1 family 1853231 0 Odoribacteraceae 1 67822 3 0 Odoribacter 39 genus 283168 2 1 67821 28118 species 0 Odoribacter splanchnicus 67782 1 Prevotellaceae 0 171552 231 family 11 1433053 1 1432822 1 10 838 2533 genus 0 Prevotella 28132 species 0 Prevotella melaninogenica 233764 1 Prevotella jejuni 0 species 1177574 1 194292 species 839 Prevotella ruminicola 0 207193 1 0 Prevotella enoeca 76123 species 1 64867 117860 1 28129 species 0 Prevotella denticola 0 2638335 no rank 1 39292 1 39292 0 Prevotella sp. oral taxon 299 species 652716 52227 species Prevotella dentalis 0 108015 1 species 589436 0 Prevotella fusca 206392 1 Prevotella intermedia 0 species 28131 1 258614 5 1 149183 Rikenellaceae 0 family 13 171550 genus 1 1611681 Mucinivorans 0 1 2960 2 0 Mucinivorans hirudinis species 1433126 1 2959 Alistipes 0 239759 genus 24 2 146210 1 146186 1 species 214856 0 Alistipes finegoldii 1372724 1 11 815 family 55 0 Bacteroidaceae 1 1372669 10 44806 genus 816 Bacteroides 0 species 246787 0 Bacteroides cellulosilyticus 71541 1 1 279219 0 Bacteroides fragilis 817 species 1 49430 0 Bacteroides helcogenes species 290053 1 98239 0 Bacteroides caecimuris species 1796613 28119 species 0 Bacteroides zoogleoformans 32480 1 28113 species 0 Bacteroides heparinolyticus 33436 1 species 818 Bacteroides thetaiotaomicron 0 316049 1 Bacteroides caccae 0 species 47678 1 172335 1 275134 Bacteroides ovatus 0 28116 species Marinilabiliales 0 25 order 1970189 8 1 10230 1970190 1 family 0 Salinivirgaceae 1888 1 2 1 1887 0 1970191 genus 1307839 species Salinivirga cyanobacteriivorans 0 1887 1 0 1573805 family 1 2224 0 2060722 genus 1 2224 2224 1 species 1717717 0 Marinifilaceae bacterium SPP2 1 1896 0 family 558415 genus 1193324 0 1896 1 species 889453 Alkalitalea saponilacus 0 1896 1 family 10 1471398 Prolixibacteraceae 0 1 4197 3 0 Draconibacterium genus 2 1471399 2 1 4187 1 4185 Draconibacterium orientale 0 1168034 species 0 Cytophagia 192 class 768503 58 1 86924 86732 1 57 768507 344 order 0 Cytophagales 16 39149 1 Hymenobacteraceae 0 1853232 213 family 0 Pontibacter 18 genus 323449 3 1 8473 Pontibacter korlensis 0 species 400092 1 5645 2810 1 species 388950 0 Pontibacter akesuensis 8 20233 1 Hymenobacter 0 89966 genus 264 1 2947 0 Hymenobacter swuensis 1446467 species 13067 5 2615202 no rank 0 1 2883 0 Hymenobacter sp. APR13 1356852 species Hymenobacter sp. DG25A 0 species 1385663 1 1319 1 3478 0 Hymenobacter sp. PAMC 26554 species 1484116 1 3547 Hymenobacter sp. PAMC 26628 0 species 1484118 1 1840 0 Hymenobacter sp. DG25B 1385664 species 1 3955 Hymenobacter sedentarius 0 1411621 species 4 1 10230 Rufibacter 0 genus 92 1379908 1 4161 Rufibacter tibetensis 0 512763 species 2 5977 0 no rank 2639626 Rufibacter sp. DG15C 0 1379909 species 1 2839 1 3138 Rufibacter sp. DG31D 0 1379910 species 3 701 0 family 1501348 0 genus 273135 1 454 2641185 no rank 0 454 1 1 454 0 Cardinium endosymbiont of Encarsia pergandiella 249402 species 2 1 247 Candidatus Amoebophilus 0 genus 6 281119 1 241 Candidatus Amoebophilus asiaticus 0 281120 species 3046 2 family 1853234 0 3046 1 2 59740 genus 2 Persicobacter 0 3044 1 no rank 2664020 0 1085624 species Persicobacter sp. JZB09 0 3044 1 563798 family 10 Cyclobacteriaceae 0 8939 1 10 1 2165 2 4 genus 390846 Echinicola 0 species 390884 Echinicola vietnamensis 0 2161 1 0 Algoriphagus genus 2 246875 2 1 1604 Algoriphagus sp. M8-2 0 1727163 species 1 1602 68288 9 genus Cyclobacterium 0 3349 1 3 species 104 Cyclobacterium marinum 0 913 1 Cyclobacterium amurskyense 0 320787 species 1 2427 1811 1 2 232244 1 genus Belliella 0 1810 1 232259 species 0 Belliella baltica 2890 2 2762301 family 0 2890 1 2 869806 genus 23 Marivirga 0 1 2867 Marivirga tractuosa 0 species 1006 23534 1 16 89373 family 27 Cytophagaceae 0 105 7 genus 0 Runella 1929 1 2 0 Runella slithyformis species 106 1 1922 6 9647 1 0 Spirosoma 107 92 genus 1 1636 Spirosoma radiotolerans 0 species 1379870 Spirosoma rigui 0 species 564064 1 1387 1 2097 0 Spirosoma montaniterrae 1178516 species 2796 1 species 2057025 Spirosoma sp. HA7 0 1639 1 1211326 species Spirosoma aerolatum 0 1 2528 2 genus 4 978 Cytophaga 0 2524 1 985 species 0 Cytophaga hutchinsonii 0 genus 319458 1 3045 species 316068 0 Leadbetterella byssophila 3045 1 120831 genus 5 Dyadobacter 0 3245 1 2 1 3240 Dyadobacter fermentans 0 species 94254 Fibrella 0 2 genus 861914 2 1 3113 0 2620963 no rank 1 3111 3111 1 1834519 species 0 Fibrella sp. ES10-3-2-2 3 2445 1 0 Bernardetiaceae 1937968 family 2 2 1 2443 0 Bernardetia genus 32 1937972 species 999 Bernardetia litoralis 0 2411 1 5684 1 4 200667 family 1 Flammeovirgaceae 0 340671 no rank 0 2512 1 1257021 species Flammeovirgaceae bacterium 311 0 2512 1 Flammeovirga 0 59739 3 genus 2 3171 1 0 2637820 no rank 1 3168 1191459 species Flammeovirga sp. MY04 0 3168 1 15 21547 1 0 Chitinophagia 1853228 class 9 14 1 21538 Chitinophagales 0 67 order 1853229 21471 1 13 563835 family 226 0 Chitinophagaceae 0 79328 genus 2 6896 1 3872 Chitinophaga pinensis 0 79329 species 2029983 species Chitinophagaceae bacterium 13 0 3024 1 2 1 3126 0 Filimonas genus 5 649460 species 477680 0 Filimonas lacunae 3121 1 0 Niastella genus 23 354354 2 1 3013 Niastella koreensis 0 species 354356 1 2990 0 1769012 genus 1 1075 no rank 2636138 0 1075 1 1 1075 0 Arachidicoccus sp. BS20 species 1850526 3 5065 1 0 Niabella 379899 1 genus 446683 species Niabella soli 0 1363 1 1176587 species 0 Niabella ginsenosidivorans 3701 1 0 Flavisolibacter 398041 28 genus 2 2070 1 2042 1 1492898 species 0 Flavisolibacter tropicus 1100069 order 53 Bacteroidetes Order II. Incertae sedis 0 4780 1 7 6 1 4727 Rhodothermaceae 0 47 family 563843 16 genus 29548 0 Rhodothermus 1 1785 2 1769 1 29549 species 0 Rhodothermus marinus 0 1196022 no rank 1 2211 1 2211 Rhodothermaceae bacterium RA 0 species 1779382 Salinibacter 0 146918 8 genus 2 684 1 676 1 species 146919 Salinibacter ruber 0 117743 27 class 0 Flavobacteriia 416442 1 140 139 416415 1 0 Flavobacteriales 200644 360 order 39782 family 0 2577 9 Blattabacterium 0 34 genus 34098 9 1 2577 600 1 species 1653831 0 Blattabacterium cuenoti 1602 6 2647581 no rank 0 367488 species Blattabacterium sp. (Periplaneta americana) 0 201 1 0 Blattabacterium sp. (Mastotermes darwiniensis) species 39768 1 286 98 1 species 1186051 0 Blattabacterium sp. (Blaberus giganteus) 1 74 Blattabacterium sp. (Blatta orientalis) 0 367806 species species 1316444 Blattabacterium sp. (Nauphoeta cinerea) 0 564 1 Blattabacterium sp. (Blattella germanica) 0 species 624186 1 379 species 164514 Blattabacterium punctulatus 0 341 1 family 1333713 0 1698 2 1698 1 2 267986 genus 37 0 Owenweeksia species 253245 Owenweeksia hongkongensis 0 1661 1 0 1853230 family 2 2299 1 2299 2 genus 3 332102 Fluviicola 0 2296 1 species 191579 0 Fluviicola taffensis 20 240164 0 family 2762318 2 10566 1 0 Ornithobacterium 28250 genus 39 10527 1 species 28251 0 Ornithobacterium rhinotracheale 0 34084 genus 1 2797 1 2797 0 Riemerella anatipestifer 34085 species 1 1178 0 genus 1013 1 1178 0 Weeksella virosa 1014 species 0 2782232 no rank 10 213829 0 genus 2782228 1 1457 1 1457 0 Chryseobacterium taklimakanense 536441 species 0 Chryseobacterium 42 genus 59732 9 1 212372 Chryseobacterium glaciei 0 1685010 species 1 1885 Chryseobacterium indologenes 0 253 species 1 5103 1751 1 species 1265445 0 Chryseobacterium camelliae Chryseobacterium gallinarum 0 1324352 species 1 195631 3 6396 0 2593645 no rank 1721091 species Chryseobacterium sp. IHB B 17019 0 934 1 species 878220 Chryseobacterium sp. StRB126 0 2765 1 species 2015076 Chryseobacterium sp. T16E-39 0 2697 1 1564 1 558152 species 0 Chryseobacterium piperi 308865 152 genus 0 Elizabethkingia 11794 1 6 Elizabethkingia genomosp. 4 0 1756150 species 1 1507 4419 1 species 1117645 0 Elizabethkingia anophelis 1 1335 Elizabethkingia genomosp. 3 0 1756149 species Elizabethkingia meningoseptica 0 species 238 1 2131 Elizabethkingia miricola 0 172045 species 1 2250 family 1755828 0 428 2 Ichthyobacterium 0 1755829 1 genus 2 428 1 242600 species Ichthyobacterium seriolicida 0 427 1 0 no rank 313602 2 391 336809 genus 0 350 1 1 350 Candidatus Sulcia muelleri 0 336810 species genus 1940138 0 41 1 Candidatus Walczuchella monophlebidarum 0 1415657 species 1 41 1 168498 101 1774 family 49546 Flavobacteriaceae 0 992 1 2 358023 genus 2 0 Lutibacter 0 Lutibacter profundi species 1622118 1 990 0 genus 216431 1 1300 1 1300 0 Croceibacter atlanticus 313588 species 1329 1 2 153265 1 genus Aequorivita 0 Aequorivita sublithincola 0 101385 species 1 1328 6 9025 1 0 Polaribacter 52959 genus 83 5990 3 no rank 196858 0 1 1604 0 Polaribacter sp. BM10 species 1529069 1 2709 0 Polaribacter sp. ALD11 2058137 species species 313598 0 Polaribacter sp. MED152 1677 1 996801 species 0 Polaribacter reichenbachii 1400 1 species 1774273 0 Polaribacter vadi 1552 1 83612 genus 0 1676 1 species 57029 0 Psychroflexus torquis 1676 1 genus 1176327 0 1334 1 1334 1 no rank 2636237 0 1 1334 Aureitalea sp. RR4-38 0 species 2094025 Flavobacterium 0 127 genus 237 9 1 18606 Flavobacterium indicum 0 312277 species 1 1346 Flavobacterium psychrophilum 0 96345 species 1 2314 3077 1 species 996 0 Flavobacterium columnare 1 1224 Flavobacterium branchiophilum 0 species 55197 1525 1 1492737 species Flavobacterium gilvum 0 1698 1 1306519 species 0 Flavobacterium commune 1 5183 Flavobacterium johnsoniae 0 986 species 0 Flavobacterium crassostreae species 1763534 1 2112 1 4220 4 12 genus 326319 Dokdonia 0 2 2509 0 no rank 2615033 1305 1 313590 species Dokdonia sp. MED134 0 1 1204 Dokdonia sp. 4H-3-7-5 0 983548 species 1699 1 326320 species 0 Dokdonia donghaensis 1566 1 1209327 genus 0 1 1566 Flavivirga eckloniae 0 1803846 species 336276 genus 2 0 Olleya 487 1 2 1 485 0 2615019 no rank 2058135 species 0 Olleya sp. Bg11-27 485 1 560 1 389486 genus 0 560 1 no rank 2648869 0 560 1 1453352 species 0 Sediminicola sp. YIK13 5 9646 1 Myroides 0 76831 279 genus 4414 2 no rank 2642485 0 1 1900 0 Myroides sp. ZB35 species 1458492 2514 1 1583100 species Myroides sp. A21 0 2747 1 species 76832 Myroides odoratimimus 0 0 Myroides profundi species 480520 1 2206 5 8744 1 Gramella 0 292691 genus 7 2099 1 2126553 species Gramella sp. SH35 0 species 411153 0 Gramella forsetii 2822 1 1486245 species Gramella flava 0 1744 1 2072 1 1913577 species Gramella sp. LPB0144 0 0 252306 genus 1 2235 0 Robiginitalea biformata 252307 species 1 2235 2 1712 0 genus 111500 111501 species 0 Muricauda ruestringensis 1073 1 639 1 species 516051 0 Muricauda lutaonensis 2623 2 286104 genus 0 no rank 2615021 0 2623 2 species 1936080 Winogradskyella sp. J14-2 0 1202 1 0 Winogradskyella sp. PG-2 species 754409 1 1421 353 genus 1016 Capnocytophaga 0 1 41304 15 1 1660 0 Capnocytophaga stomatis species 1848904 0 Capnocytophaga canimorsus species 28188 1 2565 1 4764 Capnocytophaga sputigena 0 1019 species 14556 6 no rank 2640652 0 1726 1 1945657 species 0 Capnocytophaga sp. H2931 3012 1 species 209053 0 Capnocytophaga sp. ChDC OS43 0 Capnocytophaga sp. oral taxon 323 species 1705617 1 2123 1 4412 0 Capnocytophaga sp. oral taxon 878 species 1316596 species 1945658 0 Capnocytophaga sp. H4358 1560 1 0 Capnocytophaga sp. oral taxon 864 species 1316593 1 1723 0 Capnocytophaga gingivalis species 1017 1 5128 1 2011 Capnocytophaga cynodegmi 0 28189 species 1 2793 Capnocytophaga haemolytica 0 45243 species 1 5147 Capnocytophaga leadbetteri 0 species 327575 2327 1 species 1018 0 Capnocytophaga ochracea 2 3280 0 61432 no rank 1 1556 0 Flavobacteriaceae bacterium 3519-10 species 531844 1724 1 species 1150389 0 Flavobacteriaceae bacterium UJ101 3279 1 393005 genus 0 2069432 species 0 Tamlana sp. UJ94 3279 1 6044 1 4 104264 16 genus Cellulophaga 0 1489 1 species 59600 Cellulophaga algicola 0 1 2447 Cellulophaga baltica 0 species 76594 0 Cellulophaga lytica 979 species 1 2092 1 1638 3 genus 21 225842 Formosa 0 0 2644710 no rank 2 1617 Formosa sp. Hel1_33_131 0 1336794 species 1 704 0 Formosa sp. Hel3_A1_48 1336795 species 1 913 2507 1 genus 1518147 0 0 Wenyingzhuangia fucanilytica 1790137 species 1 2507 2 genus 417127 0 Zunongwangia 1 2590 2 species 398743 0 Zunongwangia profunda 2588 1 1 1196 0 genus 178469 1196 1 616991 species Arenibacter algicola 0 1493 1 genus 1204360 0 Siansivirga zeaxanthinifaciens 0 762954 species 1 1493 1 genus 104267 0 Tenacibaculum 1 7523 5 species 669041 0 Tenacibaculum dicentrarchi 1880 1 2417 1 species 584609 Tenacibaculum jejuense 0 Tenacibaculum maritimum 0 107401 species 1 1296 1850252 species 0 Tenacibaculum todarodis 1929 1 4 1 4155 0 Lacinutrix 1 genus 291183 1157 1 species 1486034 0 Lacinutrix venerupis 2 2997 0 no rank 2647285 species 983544 0 Lacinutrix sp. 5H-3-7-4 1121 1 1 1876 Lacinutrix sp. Bg11-31 0 species 2057808 0 Nonlabens 363408 genus 24 5 7837 1 319236 species Nonlabens sediminis 0 2495 1 697 1 species 328515 0 Nonlabens dokdonensis 0 2615035 no rank 2 4621 2058134 species 0 Nonlabens sp. MB-3u-79 2597 1 1 2024 Nonlabens sp. MIC269 0 species 1476901 1 1888 0 genus 143222 1 1888 0 no rank 2633436 1888 1 species 1729720 0 Salegentibacter sp. T436 1532 1 261827 genus 0 Algibacter alginicilyticus 0 species 1736674 1 1532 genus 1649495 0 2520 1 0 2622645 no rank 1 2520 Seonamhaeicola sp. S2-3 0 species 1936081 1 2520 2 1 2458 0 Zobellia 21 genus 112040 63186 species 0 Zobellia galactanivorans 2437 1 0 genus 2700084 1 1723 1723 1 species 1850246 0 Lutibacter sp. LPB0138 Maribacter 0 genus 2 252356 5 1 7702 0 no rank 2615042 3 5546 1386 1 species 1836467 0 Maribacter sp. T28 species 313603 Maribacter sp. HTCC2170 0 1213 1 Maribacter sp. 1_2014MBL_MicDiv 0 1644130 species 1 2947 0 Maribacter cobaltidurans species 1178778 1 2154 45085 1 24 117747 class 24 0 Sphingobacteriia Sphingobacteriales 0 200666 20 order 23 45061 1 84566 57 family Sphingobacteriaceae 0 45041 1 22 genus 10 423349 Mucilaginibacter 0 1 5744 4 Mucilaginibacter sp. BJC16-A31 0 species 1234841 1 2419 1825 1 species 1550579 Mucilaginibacter gotjawali 0 1490 1 2617802 no rank 0 1490 1 species 1300914 Mucilaginibacter sp. PAMC 26640 0 Sphingobacterium 0 genus 37 28453 6 1 14136 4 11795 0 no rank 2609468 0 Sphingobacterium sp. 21 743722 species 1 1444 2452 1 1538644 species Sphingobacterium sp. ML3W 0 Sphingobacterium sp. B29 0 species 1933220 1 4471 species 2003121 Sphingobacterium sp. G1-14 0 3428 1 species 1010 0 Sphingobacterium mizutaii 2304 1 6 1 14777 Pedobacter 0 124 genus 84567 2791 1 2628915 no rank 0 1727164 species Pedobacter sp. PACM 27299 0 2791 1 2907 1 species 188932 Pedobacter cryoconitis 0 0 Pedobacter ginsengisoli species 363852 1 3005 984 species Pedobacter heparinus 0 2294 1 430522 species Pedobacter steynii 0 3656 1 1 3196 2 3 genus 1649482 Pseudopedobacter 0 1 3193 0 Pseudopedobacter saltans 151895 species 1 4215 2 genus 1 929509 0 Solitalea 1 4214 0 Solitalea canadensis species 995 0 no rank 84568 1 2916 1 2916 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 1986952 species 0 Saprospiria 1937959 class 4 7 2611 1 6 2607 1 0 Saprospirales 1936988 order 4 3 1346 1 0 Haliscomenobacteraceae 1937961 family 2 Haliscomenobacter 0 2349 genus 8 2 1344 1 1 1336 0 Haliscomenobacter hydrossis species 2350 family 89374 0 1257 2 Saprospira 0 9 genus 1007 2 1 1257 species 1008 0 Saprospira grandis 1248 1 phylum 65842 0 3178 5 1 3178 5 1 class 204430 Fibrobacteria 0 4 3177 1 0 Fibrobacterales 218872 6 order 0 Fibrobacteraceae 204431 family 1 3 3171 1 1 3170 2 4 genus 832 Fibrobacter 0 1 3166 Fibrobacter succinogenes 0 species 833 0 phylum 456828 2 520 2 520 1 0 Candidatus Cloacimonas 456826 1 genus 1 519 0 Candidatus Cloacimonas acidaminovorans species 456827 8 2808 0 142182 phylum 1 2808 8 class 99 219685 Gemmatimonadetes 0 219686 order 64 0 Gemmatimonadales 2709 1 7 1 2645 6 40 family 219687 Gemmatimonadaceae 0 1491 1 3 173479 47 genus Gemmatimonas 0 1379270 species Gemmatimonas phototrophica 0 544 1 0 Gemmatimonas aurantiaca 173480 species 1 900 2 1 1114 Gemmatirosa 0 4 genus 1706036 species 861299 Gemmatirosa kalamazoonesis 0 1110 1 24 56439 0 phylum 32066 Fusobacteriia 0 203490 37 class 24 56439 1 23 56402 1 0 Fusobacteriales 203491 order 201 12260 1 11 1129771 17 family 0 Leptotrichiaceae 1 1680 2 genus 1 168808 0 Sneathia species 187101 Sneathia amnii 0 1679 1 0 genus 32068 1 1831 1 1831 Sebaldella termitidis 0 826 species 1 7202 5 genus 5 32067 Leptotrichia 0 5506 3 2633022 no rank 0 species 712368 Leptotrichia sp. oral taxon 498 0 1656 1 Leptotrichia sp. oral taxon 847 0 species 1785996 1 1523 0 Leptotrichia sp. oral taxon 212 species 712357 1 2327 Leptotrichia buccalis 0 40542 species 1 1691 1530 1 2 34104 genus 47 Streptobacillus 0 1483 1 species 34105 0 Streptobacillus moniliformis 11 1 43941 0 Fusobacteriaceae family 91 203492 0 167639 genus 1 2405 167642 species 0 Ilyobacter polytropus 2405 1 1 41445 9 genus 119 848 0 Fusobacterium 861 species Fusobacterium ulcerans 0 3096 1 4360 1 species 1583098 0 Fusobacterium hwasookii 12758 1 851 species Fusobacterium nucleatum 0 1 1258 0 Fusobacterium necrophorum 859 species 1 1640 0 Fusobacterium gonidiaformans species 849 0 Fusobacterium periodonticum species 860 1 8072 856 species Fusobacterium varium 0 6701 1 0 Fusobacterium mortiferum 850 species 1 3441 10400 20 57723 phylum 0 class 2 1562566 0 Blastocatellia 1 644 3 2 642 1 Chloracidobacterium 0 458032 8 genus 634 1 species 458033 Chloracidobacterium thermophilum 0 9756 1 17 204432 class 103 Acidobacteriia 0 Acidobacteriales 0 204433 53 order 12 8098 1 8045 1 11 204434 family 61 Acidobacteriaceae 0 392733 genus 3 0 Terriglobus 3697 1 3 Terriglobus roseus 0 392734 species 1 2923 1 771 Terriglobus saanensis 0 870903 species 2 1 962 0 Candidatus Koribacter 14 genus 658061 species 658062 Candidatus Koribacter versatilis 0 948 1 3 1 2300 0 Granulicella genus 23 940557 1524 1 940614 species 0 Granulicella mallensis 940615 species 0 Granulicella tundricola 753 1 0 Acidobacterium 33973 9 genus 2 1025 1 species 33075 Acidobacterium capsulatum 0 1016 1 1 1555 4 30 order 332160 Solibacterales 0 3 1525 1 Solibacteraceae 0 332161 11 family 2 1 1514 Candidatus Solibacter 0 genus 3 332162 1 1511 0 Candidatus Solibacter usitatus 332163 species 7 1836 0 phylum 74152 0 641853 class 1 786 0 order 641854 1 786 0 641876 family 1 786 1 786 0 423604 genus 786 1 species 423605 Elusimicrobium minutum 0 1 335 0 99260 no rank 167965 species 0 uncultured Termite group 1 bacterium 335 1 447830 class 0 715 5 Endomicrobiales 0 1 order 1783344 5 1 715 4 1 714 Endomicrobiaceae 0 family 2 1783343 3 712 1 Endomicrobium 0 1408194 genus 1 368 1 1408281 species 0 Endomicrobium proavitum species 1408204 Candidatus Endomicrobium trichonymphae 0 343 1 4 538 0 clade 2498710 538 4 67814 phylum 0 4 538 0 class 693071 0 Caldisericales order 1 693072 4 1 538 1 537 3 family 6 693073 0 Caldisericaceae 693074 6 genus 0 Caldisericum 531 1 2 species 693075 0 Caldisericum exile 525 1 20533 41 phylum 200918 0 41 20533 1 0 Thermotogae 188708 12 class 6 6756 1 0 Petrotogales 1643947 3 order 6753 5 family 1643949 0 Marinitoga 0 160798 genus 6 3 3900 1 0 Marinitoga piezophila species 149715 1 1956 1938 1 2640159 no rank 0 1 1938 0 Marinitoga sp. 1137 species 1545835 1 2093 0 1511648 genus species 1006576 Defluviitoga tunisiensis 0 2093 1 1 760 0 28236 genus 1 760 0 Petrotoga mobilis 69499 species 1 1207 6 1 order 1643946 0 Kosmotogales 1206 5 1643948 family 0 818 1 3 651456 1 genus Kosmotoga 0 416 1 1330330 species Kosmotoga pacifica 0 651457 species 0 Kosmotoga olearia 401 1 0 Mesotoga genus 1 1184396 2 1 388 387 1 1184387 species 0 Mesotoga prima 1 12558 28 order 6 2419 0 Thermotogales 2 family 1643950 0 Fervidobacteriaceae 1 5809 10 0 Thermosipho 39 genus 2420 5 1 3756 2676525 no rank 0 1603 2 species 1462747 Thermosipho sp. 1063 0 797 1 0 Thermosipho sp. 1070 species 1437364 1 806 1 950 Thermosipho melanesiensis 0 46541 species 1 1164 Thermosipho africanus 0 species 2421 2422 genus 1 Fervidobacterium 0 2051 1 4 1 727 0 Fervidobacterium pennivorans species 93466 820 1 2423 species Fervidobacterium islandicum 0 2424 species 0 Fervidobacterium nodosum 503 1 Thermotogaceae 0 family 19 188709 17 1 6743 1 1428 5 31 genus 1643951 0 Pseudothermotoga 177758 species Pseudothermotoga lettingae 0 411 1 0 Pseudothermotoga thermarum species 119394 1 252 200 1 species 57487 0 Pseudothermotoga hypogea 38322 species 0 Pseudothermotoga elfii 534 1 1 5296 11 50 genus 2335 Thermotoga 0 species 2336 Thermotoga maritima 0 407 1 407 1 1508419 species 0 Thermotoga caldifontis 596 1 93929 species 0 Thermotoga petrophila 0 2631113 no rank 4 2061 0 Thermotoga sp. RQ7 species 126738 1 790 362 1 species 1157947 Thermotoga sp. Cell2 0 species 126740 0 Thermotoga sp. RQ2 407 1 502 1 1157948 species Thermotoga sp. 2812B 0 Thermotoga naphthophila 0 species 93930 1 640 1 250 Thermotoga profunda 0 species 1508420 0 Thermotoga neapolitana species 2337 1 885 0 phylum 200783 25 8170 Aquificae 0 9 class 187857 25 1 8170 2218 1 5 1485951 order 1 0 Desulfurobacteriales 1 2217 4 family 1 558314 Desulfurobacteriaceae 0 1 418 0 genus 171868 418 1 species 228745 0 Thermovibrio ammonificans 0 Desulfurobacterium 1 genus 64159 2 1 1798 Desulfurobacterium thermolithotrophum 0 species 64160 1 1797 5943 1 19 32069 order 3 0 Aquificales no rank 90150 0 441 1 1 441 0 genus 412592 Thermosulfidibacter takaii 0 species 412593 1 441 0 Aquificaceae 64898 family 12 11 3261 1 6 1 1884 Hydrogenobaculum 0 22 genus 168657 0 2622382 no rank 5 1862 336 1 species 547145 Hydrogenobaculum sp. SHO 0 Hydrogenobaculum sp. Y04AAS1 0 species 380749 1 518 0 Hydrogenobaculum sp. 3684 547143 species 1 336 1 336 0 Hydrogenobaculum sp. HO 547144 species 0 Hydrogenobaculum sp. SN species 547146 1 336 0 genus 939 1 261 species 940 Hydrogenobacter thermophilus 0 261 1 2713 genus 0 313 1 1 313 0 Aquifex aeolicus 63363 species 2 791 0 genus 75905 1 475 Thermocrinis albus 0 136094 species 1 316 0 Thermocrinis ruber 75906 species Hydrogenothermaceae 0 224027 family 6 6 2238 1 1 genus 182899 Persephonella 0 1 774 2 species 309805 Persephonella marina 0 773 1 genus 4 212790 Sulfurihydrogenibium 0 1 1458 3 826 1 2619248 no rank 0 826 1 436114 species 0 Sulfurihydrogenibium sp. YO3AOP1 628 1 309806 species 0 Sulfurihydrogenibium azorense 6315 11 508458 phylum 0 0 Synergistia 649775 15 class 11 6315 1 1 6300 10 22 order 649776 Synergistales 0 6278 1 9 649777 1627 family Synergistaceae 0 1 682 0 genus 81466 81468 species 0 Aminobacterium colombiense 682 1 49894 1 genus Acetomicrobium 0 316 1 2 1 315 0 Acetomicrobium mobile 97477 species 2 1 2823 0 Cloacibacillus 2 genus 508459 1197717 species 0 Cloacibacillus porcorum 2821 1 0 336260 genus 1 410 Thermovirga lienii 0 336261 species 1 410 2 420 1 0 Thermanaerovibrio 81461 genus 7 1 413 0 Thermanaerovibrio acidaminovorans 81462 species 0 phylum 203691 59 59012 class 113 203692 0 Spirochaetia 1 59012 59 136 778 order 0 Spirochaetales 36483 1 42 0 Borreliaceae 1643685 2 family 17 6078 1 2681 1 8 64895 genus 54 0 Borreliella 151 1 species 29518 Borreliella afzelii 0 species 139 Borreliella burgdorferi 0 644 1 1 503 Borrelia mayonii 0 1674146 species 1 573 0 Borreliella valaisiana species 62088 species 64897 0 Borreliella bissettii 195 1 436 1 29519 species 0 Borreliella garinii 1 125 Borreliella bavariensis 0 664662 species 8 1 3395 Borrelia 0 genus 70 138 372 1 species 141 0 Borrelia parkeri 403 1 47466 species 0 Borrelia miyamotoi 0 Borrelia turicatae 142 species 1 453 716 1 species 40834 0 Borrelia duttonii Borrelia recurrentis 0 species 44449 1 524 140 species Borrelia hermsii 0 625 1 143 species Borrelia anserina 0 232 1 0 Spirochaetaceae family 134 137 24 1 29627 1 19981 12 2137 genus 157 0 Treponema 1415 1 81028 species 0 Treponema brennaborense 759 1 88058 species 0 Treponema primitia species 167 Treponema succinifaciens 0 5935 1 1 872 Treponema denticola 0 species 158 Treponema caldarium 0 215591 species 1 1524 0 no rank 2638727 1 1936 1936 1 1539298 species 0 Treponema sp. OMZ 838 1312 1 150829 species Treponema azotonutricium 0 2689 1 species 221027 0 Treponema putidum Treponema pedis 0 species 409322 1 1309 1 48 Treponema paraluiscuniculi 0 species 53435 species 160 Treponema pallidum 0 45 1 12 genus 399320 Sphaerochaeta 0 1 4031 4 1490 1 273376 species 0 Sphaerochaeta coccoides Sphaerochaeta globosa 0 1131703 species 1 1642 Sphaerochaeta pleomorpha 0 species 1131707 1 887 1616789 2 genus 0 Salinispira 1329 1 2 0 Salinispira pacifica 1307761 species 1 1327 3 1 2586 Spirochaeta 0 4 genus 146 1 970 Spirochaeta thermophila 0 species 154 1 1612 0 Spirochaeta africana 46355 species 2 1 1566 Sediminispirochaeta 0 21 genus 1911556 55206 species 0 Sediminispirochaeta smaragdinae 1545 1 18409 1 7 1643686 order 3 0 Brachyspirales 0 Brachyspiraceae 143786 family 1607 6 18406 1 16799 1 5 29521 genus 1432 Brachyspira 0 2488 1 species 84378 Brachyspira murdochii 0 1 3752 Brachyspira hyodysenteriae 0 159 species 1 5991 Brachyspira pilosicoli 0 52584 species 84377 species Brachyspira intermedia 0 3136 1 4007 9 1643688 order 0 Leptospiraceae 0 170 family 4 9 4007 1 genus 15 171 Leptospira 0 1 3725 6 species 28452 0 Leptospira alstonii 324 1 Leptospira biflexa 0 species 172 1 772 341 1 species 28183 0 Leptospira santarosai 582 1 species 174 0 Leptospira borgpetersenii 173 species 0 Leptospira interrogans 1691 1 0 Turneriella 338321 genus 1 2 278 1 277 1 29510 species Turneriella parva 0 11046359 1679 1783272 clade 0 201174 35 phylum 0 Actinobacteria 733677 1 638 587 1 600295 Actinobacteria 0 class 5936 1760 16 9393 1 0 Streptosporangiales 85012 30 order 2004 family 34 0 Streptosporangiaceae 4025 1 5 2583 1 2 83681 17 genus 0 Nonomuraea 1 2566 0 no rank 2593643 Nonomuraea sp. ATCC 55076 0 species 1909395 1 2566 2 1408 1 0 Streptosporangium 2000 genus 11 1397 1 species 2001 Streptosporangium roseum 0 7 1 3672 Nocardiopsaceae 0 family 110 83676 4 2774 1 Nocardiopsis 0 2013 genus 50 Nocardiopsis dassonvillei 0 2014 species 1 1033 species 53437 0 Nocardiopsis alba 802 1 280236 species Nocardiopsis gilva 0 889 1 2 1 788 0 Thermobifida 13 genus 83677 775 1 species 2021 Thermobifida fusca 0 Thermomonosporaceae 0 2012 16 family 3 1666 1 Thermomonospora 0 22 genus 2019 2 1 1650 1628 1 species 2020 Thermomonospora curvata 0 Micromonosporales 0 order 29 85008 20 1 18730 0 Micromonosporaceae 28056 210 family 19 18701 1 673534 35 genus 0 Plantactinospora 3244 1 4 3 3209 0 2631981 no rank 1227 1 species 2024580 0 Plantactinospora sp. KBS50 Plantactinospora sp. BC1 0 species 2108470 1 1023 1 959 Plantactinospora sp. BB1 0 species 2071627 1 4443 4 103 genus 1873 Micromonospora 0 Verrucosispora maris 0 species 1003110 1 1038 1 1882 0 2617518 no rank 648999 species 0 Micromonospora sp. L5 1882 1 1 1420 Micromonospora aurantiaca 0 species 47850 Verrucosispora 0 genus 84593 1 7 3 1468 1 0 Salinispora 168694 genus 14 species 168695 Salinispora tropica 0 607 1 Salinispora arenicola 0 168697 species 1 847 1 9329 6 genus 184 1865 0 Actinoplanes 196914 species 0 Actinoplanes friuliensis 1546 1 species 1866 Actinoplanes missouriensis 0 2141 1 0 2626549 no rank 3 5458 0 Actinoplanes sp. SE50 2033844 species 1 1628 1 2202 Actinoplanes sp. N902-109 0 649831 species 1 1628 0 Actinoplanes sp. SE50/110 species 134676 4 1454 1 0 Nakamurellales 1643684 order 5 44 family 85031 0 Nakamurellaceae 1 1449 3 0 Nakamurella 16 genus 53460 2 1 1405 Nakamurella multipartita 0 53461 species 1 1389 414714 13 order Catenulisporales 0 2056 1 4 2043 1 3 414877 family 22 Catenulisporaceae 0 13 genus 414878 Catenulispora 0 1 2021 2 304895 species 0 Catenulispora acidiphila 2008 1 85014 1 order Glycomycetales 0 852 1 4 851 1 3 85034 10 family 0 Glycomycetaceae 1 841 2 11 genus 283810 0 Stackebrandtia Stackebrandtia nassauensis 0 283811 species 1 830 185 2 1643683 order 0 85032 family 0 185 2 Acidothermus 0 1 genus 28048 2 1 185 Acidothermus cellulolyticus 0 28049 species 1 184 29194 1 41 85010 order 42 Pseudonocardiales 0 29152 1 40 2070 family 330 Pseudonocardiaceae 0 Actinosynnema 0 40566 47 genus 3 3747 1 1 1776 0 Actinosynnema pretiosum 42197 species 1924 1 species 40567 Actinosynnema mirum 0 1847 genus 88 Pseudonocardia 0 6184 1 8 species 240495 Pseudonocardia dioxanivorans 0 708 1 2619320 no rank 0 5388 6 1065 1 species 1688404 Pseudonocardia sp. EC080610-09 0 1 727 0 Pseudonocardia sp. HH130629-09 species 1641402 1690815 species Pseudonocardia sp. HH130630-07 0 698 1 1 973 0 Pseudonocardia sp. AL041005-10 445576 species 1 857 Pseudonocardia sp. EC080625-04 0 1096868 species Pseudonocardia sp. EC080619-01 0 1096856 species 1 1068 Saccharopolyspora 0 genus 7 1835 2 1 1073 1066 1 species 1836 0 Saccharopolyspora erythraea Alloactinosynnema 0 674734 1 genus 2 847 1 no rank 2636053 0 846 1 846 1 1653480 species 0 Alloactinosynnema sp. L-07 7 1 6734 Amycolatopsis 0 109 genus 1813 0 Amycolatopsis japonica species 208439 1 874 1639 1 species 31958 0 Amycolatopsis orientalis species 1814 Amycolatopsis methanolica 0 847 1 0 no rank 2618356 2 1943 0 Amycolatopsis sp. AA4 species 1896961 1 1129 1 814 0 Amycolatopsis sp. BJA-103 species 1911175 1322 1 33910 species Amycolatopsis mediterranei 0 398 1 genus 1851 0 1852 species 0 Saccharomonospora viridis 398 1 2071 3 genus 0 Saccharothrix 1300 1 2 1 1297 Saccharothrix espanaensis 0 species 103731 1 955 2 genus 4 165301 Lentzea 0 species 1586287 0 Lentzea guizhouensis 951 1 2143 1 2 43356 14 genus 0 Kutzneria 43357 species 0 Kutzneria albida 2129 1 0 Prauserella 9 genus 142577 2 1 551 species 530584 0 Prauserella marina 542 1 Actinoalloteichus 0 65496 genus 70 6 3610 1 0 Actinoalloteichus hymeniacidonis 340345 species 1 606 1442 2 2644606 no rank 0 species 2072503 0 Actinoalloteichus sp. AHMU CJ021 708 1 0 Actinoalloteichus sp. GBA129-24 species 1612551 1 734 Actinoalloteichus hoggarensis 0 species 1470176 1 729 763 1 species 1612552 0 Actinoalloteichus sp. ADI127-7 1 1280 2 3 genus 2029 Kibdelosporangium 0 1277 1 species 860235 Kibdelosporangium phytohabitans 0 0 Actinomycetales order 9 2037 19 1 15938 18 15929 1 Actinomycetaceae 0 2049 family 3632 0 Arcanobacterium 28263 3 genus 2 791 1 1 788 0 Arcanobacterium haemolyticum species 28264 1 6719 9 152 genus 1654 Actinomyces 0 0 Actinomyces sp. VUL4_3 1912795 species 1 551 1049 1 544580 species Actinomyces oris 0 1960083 species Actinomyces gaoshouyii 0 820 1 Actinomyces radicidentis 0 species 111015 1 886 3 2625 0 no rank 2609248 species 712122 Actinomyces sp. oral taxon 414 0 1050 1 1037 1 2081702 species Actinomyces sp. oral taxon 897 0 1 538 Actinomyces sp. Chiba101 0 1851395 species 1 636 Actinomyces pacaensis 0 species 1852377 1069494 genus 7 0 Trueperella 1190 1 2 Trueperella pyogenes 0 species 1661 1 1183 0 Mobiluncus 124 genus 2050 2 1 1720 1596 1 species 2051 Mobiluncus curtisii 0 419 1 1653174 genus 0 1 419 Actinotignum schaalii 0 59505 species 1458 1 genus 2529408 0 Actinomyces meyeri 0 species 52773 1 1458 3 1110 0 order 622452 83778 28 family 0 Kineosporiaceae 1110 1 3 33981 17 genus Kineococcus 0 1082 1 2 131568 species 0 Kineococcus radiotolerans 1065 1 622450 order 0 761 2 0 622451 family 2 761 1 761 2 genus 43 1849 0 Actinopolyspora species 414996 0 Actinopolyspora erythraea 718 1 Propionibacteriales 0 order 131 85009 33 1 16924 1 5020 13 family 122 85015 0 Nocardioidaceae 868 1 2 182639 71 genus Kribbella 0 182640 species 0 Kribbella flavida 797 1 4 1844 1 0 Nocardioides 1839 89 genus 567 1 species 2045452 Nocardioides sp. 78 0 517 1 species 450734 Nocardioides dokdonensis 0 no rank 2615069 0 671 1 species 196162 Nocardioides sp. JS614 0 671 1 0 Pimelobacter 2044 8 genus 2 753 1 745 1 2045 species Pimelobacter simplex 0 702 1 2 2040 genus 3 Aeromicrobium 0 0 Aeromicrobium erythreum species 2041 1 699 2 731 1 Micropruina 0 116071 genus 1 1 730 Micropruina glycogenica 0 species 75385 Propionibacteriaceae 0 31957 138 family 19 11773 1 0 203133 genus 1 902 no rank 2633994 0 902 1 species 1871034 0 Propionimicrobium sp. Marseille-P3275 902 1 Propionibacterium 0 1743 genus 62 3 2375 1 0 2608905 no rank 1 341 1 341 0 Propionibacterium sp. oral taxon 193 671223 species 1972 1 1744 species Propionibacterium freudenreichii 0 1 genus 29404 0 Microlunatus 1 857 2 species 29405 0 Microlunatus phosphovorus 856 1 1 609 0 2801844 genus Pseudopropionibacterium propionicum 0 species 1750 1 609 1 2198 4 genus 6 1912216 Cutibacterium 0 0 Cutibacterium acnes 1747 species 1 562 33010 species Cutibacterium avidum 0 1118 1 species 33011 Cutibacterium granulosum 0 512 1 72763 34 genus 0 Tessaracoccus 3475 1 5 399497 species Tessaracoccus flavescens 0 725 1 1332264 species 0 Tessaracoccus aquimaris 915 1 893 1 no rank 2635419 0 1909732 species Tessaracoccus sp. T2.5-30 0 893 1 908 1 species 1610493 Tessaracoccus flavus 0 1912215 15 genus Acidipropionibacterium 0 1219 1 2 1204 1 species 1748 Acidipropionibacterium acidipropionici 0 88735 1 82 85011 order 185 0 Streptomycetales 0 Streptomycetaceae 2062 family 595 81 88550 1 Streptomyces 0 1883 2525 genus 75 82535 1 1 566 Streptomyces fulvissimus 0 species 68202 1262 1 146923 species Streptomyces parvulus 0 1 1228 0 Streptomyces lincolnensis species 1915 1090 1 1916 species 0 Streptomyces lividans 1378 1 29303 species Streptomyces cattleya 0 Streptomyces xiamenensis 0 species 408015 1 994 0 species group 1477431 2 2302 0 Streptomyces sampsonii species 42239 1 988 Streptomyces coelicolor 0 1902 species 1 1314 1 492 Streptomyces peucetius 0 species 1950 38300 species Streptomyces pristinaespiralis 0 795 1 1 1098 0 Streptomyces alfalfae 1642299 species species 1437453 Streptomyces leeuwenhoekii 0 818 1 0 Streptomyces albulus 68570 species 1 1043 1 2235 0 Streptomyces violaceusniger 68280 species 1 524 0 Streptomyces rubrolavendulae species 285473 2 1594 0 species group 629295 863 1 1482596 species subgroup 0 1911 species 0 Streptomyces griseus 863 1 1 731 0 species subgroup 1482558 731 1 1908 species 0 Streptomyces globisporus 1 1455 0 Streptomyces clavuligerus species 1901 0 Streptomyces violaceoruber species 1935 1 782 1082 1 species 1926 Streptomyces reticuli 0 1 866 Streptomyces glaucescens 0 1907 species 33903 species 0 Streptomyces avermitilis 1257 1 species 54571 0 Streptomyces venezuelae 1310 1 0 Streptomyces xinghaiensis species 1038928 1 986 1 644 0 Streptomyces sp. XZHG99 species 2049881 1799 1 1888 species 0 Streptomyces albus 1 1117 0 Streptomyces chartreusis species 1969 996 1 species 68214 Streptomyces griseochromogenes 0 Streptomyces sp. S10(2016) 0 1783515 species 1 824 724 1 species 1355015 0 Streptomyces pluripotens 24 23719 0 2593676 no rank 1090 1 species 1561022 Streptomyces sp. CCM_MD2014 0 species 1972846 0 Streptomyces sp. Sge12 887 1 Streptomyces sp. CdTB01 0 1725411 species 1 1465 0 Streptomyces sp. M56 species 1495638 1 1792 species 1262452 0 Streptomyces sp. 769 867 1 687 1 species 1837283 0 Streptomyces sp. S8 0 Streptomyces sp. CNQ-509 species 444103 1 1024 species 2094021 0 Streptomyces sp. WAC00288 672 1 1 1005 0 Streptomyces sp. CMB-StM0423 species 2059884 0 Streptomyces sp. 3211 1964449 species 1 816 Streptomyces sp. fd1-xmd 0 1812480 species 1 846 0 Streptomyces sp. Mg1 species 465541 1 1001 1 927 0 Streptomyces sp. P3 2135430 species Streptomyces sp. Tue 6075 0 1661694 species 1 694 1116 1 1265601 species Streptomyces sp. PAMC 26508 0 0 Streptomyces sp. MOE7 1961713 species 1 841 Streptomyces sp. FR-008 0 species 206662 1 873 862751 species Streptomyces sp. SirexAA-E 0 1293 1 805 1 species 1649184 Streptomyces sp. CFMR 7 0 1 1566 Streptomyces sp. RTd22 0 species 1841249 1112 1 species 234612 Streptomyces sp. TN58 0 1 940 Streptomyces sp. SAT1 0 species 1849967 1 495 Streptomyces sp. CLI2509 0 species 1984801 Streptomyces sp. 4F 0 species 1751294 1 905 2442 1 47763 species Streptomyces lydicus 0 1971 species 0 Streptomyces noursei 780 1 1 1953 Streptomyces pactum 0 68249 species 553510 species 0 Streptomyces gilvosporeus 1068 1 species 164348 Streptomyces puniciscabiei 0 999 1 0 Streptomyces albireticuli species 1940 1 1106 Streptomyces malaysiensis 0 92644 species 1 1949 0 Streptomyces cyaneogriseus species 68192 1 838 1889 species Streptomyces ambofaciens 0 892 1 1 1090 Streptomyces alboflavus 0 67267 species 1 695 Streptomyces lavendulae 0 species 1914 1583 1 379067 species Streptomyces bingchenggensis 0 1 1830 Streptomyces autolyticus 0 75293 species 922 1 species 362257 0 Streptomyces vietnamensis 877 1 species 42684 Streptomyces collinus 0 species 1930 0 Streptomyces scabiei 911 1 1 780 0 Streptomyces niveus 193462 species species 1616117 Streptomyces formicae 0 930 1 1169025 species Streptomyces pratensis 0 1076 1 1 2309 0 Streptomyces hygroscopicus species 1912 2063 genus 62 Kitasatospora 0 5420 1 5 1 1660 0 Kitasatospora setae species 2066 Kitasatospora aureofaciens 0 species 1894 1 1170 1 1042 0 Kitasatospora albolonga species 68173 1486 1 no rank 2633591 0 1486 1 2018025 species Kitasatospora sp. MMS16-BH015 0 0 Geodermatophilales order 10 1643682 8 1 2735 2725 1 7 85030 45 family Geodermatophilaceae 0 0 Geodermatophilus genus 20 1860 2 1 940 species 1861 Geodermatophilus obscurus 0 920 1 88138 8 genus Modestobacter 0 1161 1 2 Modestobacter marinus 0 species 477641 1 1153 11 genus 38501 0 Blastococcus 1 579 2 Blastococcus saxobsidens 0 species 138336 1 568 7 1 2998 0 Frankiales order 24 85013 Frankiaceae 0 family 37 74712 6 1 2974 Frankia 0 genus 43 1854 5 1 2937 409 1 106370 species 0 Frankia casuarinae 0 Frankia alni 1859 species 1 740 0 2632575 no rank 1 841 species 298653 Frankia sp. EAN1pec 0 841 1 species 298654 0 Frankia inefficax 904 1 1 100514 161 788 order 85007 Corynebacteriales 0 Nocardiaceae 0 85025 96 family 31 22198 1 1 8235 7 159 genus 1817 0 Nocardia Nocardia cyriacigeorgica 0 species 135487 1 2020 1 840 Nocardia nova 0 37330 species Nocardia seriolae 0 37332 species 1 1432 0 Nocardia farcinica species 37329 1 1028 species 37326 Nocardia brasiliensis 0 1766 1 990 1 species 455432 0 Nocardia terpenica Rhodococcus 0 1827 genus 449 23 13867 1 1829 species 0 Rhodococcus rhodochrous 482 1 132919 species 0 Rhodococcus jostii 684 1 37919 species Rhodococcus opacus 0 2011 1 no rank 192944 0 6039 12 1805827 species Rhodococcus sp. MTM3W5.2 0 644 1 0 Rhodococcus sp. YL-1 1045808 species 1 284 species 1570939 0 Rhodococcus sp. 2G 532 1 260 1 1807790 species 0 Rhodococcus sp. BH4 1653478 species 0 Rhodococcus sp. PBTS 1 738 1 1 676 0 Rhodococcus sp. PBTS 2 species 1653479 1 477 0 Rhodococcus sp. p52 species 935199 355 1 species 679318 0 Rhodococcus sp. WMMA185 728 1 species 1564114 0 Rhodococcus sp. B7740 327 1 1727214 species Rhodococcus sp. H-CA8f 0 1 735 Rhodococcus sp. WB1 0 1033922 species 283 1 species 1723645 0 Rhodococcus sp. 008 103816 species 0 Rhodococcus pyridinivorans 561 1 865 1 191292 species 0 Rhodococcus aetherivorans 1 650 0 Rhodococcus ruber 1830 species 1833 species Rhodococcus erythropolis 0 529 1 1 677 Rhodococcus fascians 0 species 1828 1 588 0 Rhodococcus hoagii species 43767 334542 species Rhodococcus qingshengii 0 332 1 697024 no rank 0 458 1 458 1 genus 1847725 0 458 1 1528099 species Lawsonella clevelandensis 0 0 Corynebacteriaceae 1653 family 296 52 35479 1 1 35183 51 883 genus 1716 Corynebacterium 0 Corynebacterium aurimucosum 0 species 169292 1 820 1268 1 species 38289 Corynebacterium jeikeium 0 Corynebacterium glutamicum 0 1718 species 1 1314 0 Corynebacterium urealyticum species 43771 1 419 1 909 Corynebacterium imitans 0 156978 species 267 1 161895 species 0 Corynebacterium phocae 1697 species 0 Corynebacterium ammoniagenes 555 1 0 Corynebacterium ureicelerivorans species 401472 1 432 1231000 species Corynebacterium lactis 0 403 1 502 1 species 203263 0 Corynebacterium aquilae 89154 species Corynebacterium terpenotabidum 0 640 1 2 1544 0 2624378 no rank 1487956 species 0 Corynebacterium sp. ATCC 6931 1047 1 497 1 species 702967 Corynebacterium sp. NML98-0116 0 Corynebacterium resistens 0 species 258224 1 311 152794 species Corynebacterium efficiens 0 647 1 species 38305 Corynebacterium vitaeruminis 0 1137 1 1 876 Corynebacterium diphtheriae 0 species 1717 Corynebacterium variabile 0 1727 species 1 574 Corynebacterium mustelae 0 species 571915 1 520 751 1 191493 species Corynebacterium sphenisci 0 1 960 Corynebacterium ulcerans 0 65058 species 1 531 Corynebacterium doosanense 0 species 1121358 1705 species 0 Corynebacterium stationis 1037 1 0 Corynebacterium callunae 1721 species 1 661 Corynebacterium pseudotuberculosis 0 species 1719 1 564 0 Corynebacterium striatum 43770 species 1 1516 1 714 Corynebacterium maris 0 species 575200 Corynebacterium camporealensis 0 161896 species 1 458 449 1 species 161879 0 Corynebacterium kroppenstedtii 1 630 0 Corynebacterium singulare species 161899 species 1230998 0 Corynebacterium frankenforstense 759 1 species 146827 0 Corynebacterium simulans 701 1 1 761 Corynebacterium deserti 0 species 1408191 0 Corynebacterium flavescens species 28028 1 371 Corynebacterium testudinoris 0 136857 species 1 480 0 Corynebacterium atypicum 191610 species 1 368 1 818 0 Corynebacterium falsenii 108486 species 491 1 species 187491 0 Corynebacterium glaucum 1 845 0 [Brevibacterium] flavum species 92706 0 Corynebacterium crudilactis 1652495 species 1 1119 0 Corynebacterium casei 160386 species 1 686 1 418 0 Corynebacterium argentoratense 42817 species 975 1 35755 species 0 Corynebacterium kutscheri 35757 species Corynebacterium cystitidis 0 157 1 551 1 349751 species 0 Corynebacterium marinum 1 844 Corynebacterium humireducens 0 species 1223514 1 724 Corynebacterium glyciniphilum 0 species 1404244 478 1 1050174 species 0 Corynebacterium epidermidicanis 855 1 species 225326 0 Corynebacterium halotolerans 1 490 0 Corynebacterium uterequi species 1072256 33816 1 56 1762 62 family Mycobacteriaceae 0 1176 2 1073531 genus 0 875328 species 0 Mycobacterium sinense 616 1 1 560 Mycobacterium terrae 0 species 1788 9921 13 1866885 genus 0 1034 1 1810 species Mycobacterium vaccae 0 0 Mycobacterium thermoresistibile species 1797 1 773 species 1791 0 Mycobacterium aurum 845 1 0 Mycobacterium smegmatis species 1772 1 1364 species 36814 0 Mycobacterium rhodesiae 568 1 species 1800 0 Mycobacterium chubuense 661 1 species 134601 0 Mycobacterium goodii 839 1 1 703 Mycobacterium neoaurum 0 1795 species 1 589 Mycobacterium vanbaalenii 0 species 110539 species 1771 Mycobacterium phlei 0 898 1 0 Mycobacterium litorale species 758802 1 577 509 1 species 1804 Mycobacterium gilvum 0 species 1766 0 Mycobacterium fortuitum 561 1 0 genus 670516 5 2746 336 1 species 1774 0 Mycobacterium chelonae 1 404 Mycobacterium saopaulense 0 1578165 species 1 423 Mycobacterium immunogenum 0 species 83262 1520670 species Mycobacterium stephanolepidis 0 428 1 36809 species 0 Mycobacterium abscessus 1155 1 1 298 0 697025 genus 298 1 639313 species Hoyosella subflava 0 1763 genus 1429 Mycobacterium 0 19613 1 34 1 899 0 Mycobacterium dioxanotrophicus 482462 species 29311 species Mycobacterium haemophilum 0 868 1 no rank 2642494 0 7313 13 332 1 1561223 species 0 Mycobacterium sp. QIA-37 species 2051552 0 Mycobacterium sp. PYR15 757 1 0 Mycobacterium sp. YC-RL4 1682113 species 1 640 630 1 1920667 species 0 Mycobacterium sp. WY10 703 1 1570328 species Mycobacterium sp. NRRL B-3805 0 1 547 0 Mycobacterium sp. VKM Ac-1817D species 1273687 1 450 0 Mycobacterium sp. KMS species 189918 species 1879023 Mycobacterium sp. djl-10 0 830 1 1168287 species 0 Mycobacterium sp. MOTT36Y 169 1 Mycobacterium sp. JLS 0 164757 species 1 430 species 212767 Mycobacterium sp. JS623 0 787 1 1545728 species 0 Mycobacterium sp. EPa45 613 1 425 1 species 164756 Mycobacterium sp. MCS 0 161 1 species 1769 Mycobacterium leprae 0 0 Mycobacterium liflandii species 261524 1 775 1 536 0 Mycobacterium ulcerans species 1809 4 1990 0 77643 species group 1773 337 species Mycobacterium tuberculosis 0 906 1 3 1 278 0 Mycobacterium africanum 33894 biotype 291 1 biotype 1765 0 Mycobacterium bovis 78331 species Mycobacterium canettii 0 1084 1 606 1 species group 2249310 0 606 1 species 722731 Mycobacterium shigaense 0 3451 8 120793 species group 0 1194 1 1764 species Mycobacterium avium 0 1 664 Mycobacterium colombiense 0 339268 species Mycobacterium intracellulare 0 species 220 1767 4 1 970 Mycobacterium indicus pranii 0 subspecies 35617 1 115 186 1 subspecies 1203599 Mycobacterium yongonense 0 222805 subspecies Mycobacterium chimaera 0 449 1 127 1 1138383 species Mycobacterium paraintracellulare 0 701042 species 0 Mycobacterium marseillense 496 1 Mycobacterium kansasii 0 1768 species 1 747 1781 species 0 Mycobacterium marinum 838 1 85028 6 family Tsukamurellaceae 0 1365 1 4 0 Tsukamurella genus 125 2060 3 1 1359 654 1 species 57704 0 Tsukamurella tyrosinosolvens 1 580 Tsukamurella paurometabola 0 2061 species 3 225 1 Segniliparaceae 0 316606 1 family 0 Segniliparus 286801 1 genus 2 224 1 1 223 0 Segniliparus rotundus species 286802 4 1 1082 Dietziaceae 0 7 family 85029 3 1075 1 0 Dietzia 37914 genus 11 1 618 0 no rank 2617939 0 Dietzia sp. oral taxon 368 species 712270 1 618 1 446 Dietzia timorensis 0 species 499555 family 72 85026 0 Gordoniaceae 1 5103 9 1 5031 8 genus 51 2053 Gordonia 0 1209 2 2657482 no rank 0 1 777 Gordonia sp. KTR9 0 species 337191 432 1 species 2059875 0 Gordonia sp. YC-JH1 Gordonia terrae 0 species 2055 1 991 1004901 species 0 Gordonia iterans 574 1 Gordonia phthalatica 0 1136941 species 1 611 612 1 species 2054 Gordonia bronchialis 0 0 Gordonia polyisoprenivorans species 84595 1 983 1643818 no rank 0 473 2 Thermobispora 0 genus 6 147067 2 1 473 1 467 Thermobispora bispora 0 species 2006 1 4229 12 3 order 2039638 Candidatus Nanopelagicales 0 4226 11 family 2162846 0 7 1 3444 0 Candidatus Planktophila 11 genus 622681 species 1884907 0 Candidatus Planktophila vernalis 1053 1 177 1 species 1884904 0 Candidatus Planktophila sulfonica 1 1080 Candidatus Planktophila versatilis 0 species 1884905 0 Candidatus Planktophila limnetica 573600 species 1 309 1884913 species Candidatus Planktophila lacus 0 414 1 1 400 Candidatus Planktophila dulcis 0 1884914 species 1 782 4 genus 1 2039639 Candidatus Nanopelagicus 0 1 320 Candidatus Nanopelagicus hibericus 0 1884915 species 1 183 Candidatus Nanopelagicus abundans 0 species 1884916 1 278 Candidatus Nanopelagicus limnes 0 species 1884634 52018 no rank 0 482 1 482 1 species 1650658 Actinobacteria bacterium IMCC26256 0 140 1 65005 0 Micrococcales 851 order 85006 38 26287 1 0 Micrococcaceae 1268 family 562 0 genus 2078575 1 917 0 Arthrobacter sp. IHBB 11108 species 1618207 1 917 2 1 487 0 Neomicrococcus 15 genus 1868332 Neomicrococcus aestuarii 0 556325 species 1 472 1 1161 2 1 genus 1742989 Glutamicibacter 0 1 1160 Glutamicibacter arilaitensis 0 species 256701 4 1 2681 0 Pseudarthrobacter 18 genus 1742993 892 1 species 121292 Pseudarthrobacter sulfonivorans 0 556 1 361575 species Pseudarthrobacter phenanthrenivorans 0 1 1215 Pseudarthrobacter chlorophenolicus 0 species 85085 2271 1 4 57493 genus 63 0 Kocuria 1 947 Kocuria rhizophila 0 species 72000 species 71999 0 Kocuria palustris 651 1 species 446860 0 Kocuria flava 610 1 0 genus 1742992 1 629 0 Paenarthrobacter aurescens 43663 species 1 629 2 1 994 0 Micrococcus 6 genus 1269 Micrococcus luteus 0 species 1270 1 988 194 1 genus 1645 0 194 1 species 1646 Renibacterium salmoninarum 0 0 Sinomonas 4 genus 596707 2 1 827 823 1 37927 species Sinomonas atrocyanea 0 Rothia 0 32207 genus 5 3 2644 1 2047 species Rothia dentocariosa 0 450 1 0 Rothia mucilaginosa 43675 species 1 2189 1 12920 15 248 genus 1663 0 Arthrobacter 235627 no rank 0 8889 12 1 565 Arthrobacter sp. YN 0 2020486 species Arthrobacter sp. PGP41 0 species 2079227 1 505 1 712 Arthrobacter sp. PAMC 25486 0 species 1494608 1008 1 species 1652545 0 Arthrobacter sp. YC-RL1 species 1357915 Arthrobacter sp. QXT-31 0 569 1 0 Arthrobacter sp. FB24 290399 species 1 793 1 715 Arthrobacter sp. U41 0 species 1849032 1806905 species 0 Arthrobacter sp. ZXY-2 523 1 1 1049 0 Arthrobacter sp. LS16 1690248 species 1 754 Arthrobacter sp. ATCC 21022 0 species 1771959 782 1 species 1704044 0 Arthrobacter sp. ERGS1:01 914 1 species 1118963 Arthrobacter sp. Rue61a 0 656366 species Arthrobacter alpinus 0 2030 1 1753 1 species 37928 Arthrobacter crystallopoietes 0 9 2580 1 0 Intrasporangiaceae 85021 32 family 0 Arsenicicoccus genus 50 267408 2 1 838 2663846 no rank 0 788 1 1658671 species 0 Arsenicicoccus sp. oral taxon 190 788 1 853 1 2 265976 genus 56 Serinicoccus 0 797 1 1758689 species Serinicoccus sp. JLT9 0 1 526 2 genus 5 53457 Janibacter 0 species 857417 Janibacter indicus 0 521 1 1 331 2 7 genus 53357 0 Intrasporangium 324 1 species 53358 0 Intrasporangium calvum Promicromonosporaceae 0 85017 family 63 9 3740 1 3 1281 1 Cellulosimicrobium 0 157920 genus 6 1710 species Cellulosimicrobium cellulans 0 727 1 1 548 0 no rank 2624466 548 1 species 1980001 0 Cellulosimicrobium sp. TH-20 Isoptericola 0 254250 genus 20 3 1490 1 633 1 species 139208 Isoptericola variabilis 0 837 1 species 372663 0 Isoptericola dokdonensis 906 1 2 186188 genus 8 Xylanimonas 0 species 186189 Xylanimonas cellulosilytica 0 898 1 family 5 85019 0 Brevibacteriaceae 1 835 3 1 830 2 genus 8 1696 Brevibacterium 0 822 1 1703 species 0 Brevibacterium linens 1 28 0 no rank 577468 28 1 2038 genus 0 2039 species Tropheryma whipplei 0 28 1 0 family 85018 1 505 0 1862 genus 1 505 505 1 1863 species Dermatophilus congolensis 0 6 2605 1 0 Cellulomonadaceae 85016 24 family 5 1 2581 Cellulomonas 0 16 genus 1707 554 1 no rank 2620175 0 554 1 2003551 species Cellulomonas sp. PSBB021 0 1711 species Cellulomonas flavigena 0 667 1 540 1 species 1708 Cellulomonas fimi 0 species 11 0 Cellulomonas gilvus 804 1 3 1 743 0 Jonesiaceae family 3 85022 43673 genus 34 Jonesia 0 740 1 2 43674 species Jonesia denitrificans 0 706 1 0 Dermacoccaceae 15 family 145357 7 1 1739 0 Luteipulveratus genus 5 745364 2 1 658 species 571913 Luteipulveratus mongoliensis 0 653 1 2 314 1 Dermacoccus 0 57495 2 genus 1 312 Dermacoccus nishinomiyaensis 0 species 1274 2 752 1 Kytococcus 0 57499 genus 16 1 736 0 Kytococcus sedentarius species 1276 0 Beutenbergiaceae 125316 1 family 3 522 1 2 521 1 Beutenbergia 0 84756 genus 15 0 Beutenbergia cavernae 84757 species 1 506 85020 39 family Dermabacteraceae 0 5332 1 11 5 genus 472568 0 Devriesea 1 427 2 1 422 Devriesea agamarum 0 472569 species 43668 97 genus 0 Brachybacterium 4224 1 6 1 728 0 2623841 no rank 1 728 0 Brachybacterium sp. P6-10-X1 1903186 species Brachybacterium faecium 0 species 43669 1 986 1 801 0 Brachybacterium sp. VM2412 species 2017484 692 1 2017485 species Brachybacterium sp. VR2415 0 920 1 1331682 species 0 Brachybacterium ginsengisoli 36739 9 genus 0 Dermabacter 642 1 2 species 1630135 0 Dermabacter vaginalis 633 1 18528 1 45 85023 family 168 Microbacteriaceae 0 genus 123 1573 0 Clavibacter 1 2004 6 1881 1 5 28447 359 species Clavibacter michiganensis 0 1 455 0 Clavibacter sepedonicus 31964 subspecies 405 1 1874630 subspecies 0 Clavibacter capsici 0 Clavibacter nebraskensis subspecies 31963 1 364 0 Clavibacter insidiosus 33014 subspecies 1 298 1 1827 4 genus 46 2034 0 Curtobacterium 886 2 257496 no rank 0 species 1561023 Curtobacterium sp. MR_MD2014 0 465 1 1905847 species 0 Curtobacterium sp. BH-2-1-1 421 1 1 895 Curtobacterium pusillum 0 69373 species 276 1 genus 337004 0 Microcella alkaliphila 0 279828 species 1 276 Leifsonia 0 17 genus 110932 2 1 1192 0 Leifsonia xyli species 1575 1 1175 761 1 genus 33877 0 1 761 0 Agromyces aureus 453304 species 583 1 genus 1705353 0 708131 species Aurantimicrobium minutum 0 583 1 532 1 2 518733 2 genus 0 Microterricola species 412690 0 Microterricola viridarii 530 1 3 1 1883 Cryobacterium 0 genus 11 69578 1 899 0 no rank 2649013 Cryobacterium sp. LW097 0 1978566 species 1 899 species 670052 Cryobacterium arcticum 0 973 1 2 687 1 0 Cnuibacter 1759331 1 genus 1 686 0 Cnuibacter physcomitrellae species 1619308 2 204 0 no rank 1655488 2 204 0 clade 1655489 529883 genus 0 204 2 110 1 529884 species Rhodoluna lacicola 0 94 1 535712 species Candidatus Rhodoluna planktonica 0 3 628 1 Rathayibacter 0 33886 13 genus 1 206 0 Rathayibacter toxicus species 145458 Rathayibacter tritici 0 33888 species 1 409 1 genus 447237 0 Frondihabitans 1 508 2 1 507 0 2626248 no rank Frondihabitans sp. PAMC 28766 0 species 1795630 1 507 201 genus 33882 0 Microbacterium 1 6844 14 1 507 Microbacterium chocolatum 0 species 84292 36805 species Microbacterium aurum 0 930 1 no rank 2609290 0 3614 8 1 348 0 Microbacterium sp. 1.5R 1916917 species species 1696072 Microbacterium sp. CGR1 0 349 1 478 1 species 2103230 Microbacterium sp. str. 'China' 0 0 Microbacterium sp. XT11 species 367477 1 543 Microbacterium sp. BH-3-3-3 0 1906742 species 1 445 1 301 Microbacterium sp. TPU 3598 0 1938334 species 632 1 1795053 species 0 Microbacterium sp. PAMC 28756 Microbacterium sp. No. 7 0 1714373 species 1 518 162426 species 0 Microbacterium hominis 614 1 0 Microbacterium paludicola species 300019 1 525 Microbacterium testaceum 0 species 2033 1 453 1 431 0 1434032 genus 431 1 species 1159327 Pontimonas salivibrio 0 145360 26 family 0 Sanguibacteraceae 710 1 3 684 1 2 60919 8 genus Sanguibacter 0 1 676 Sanguibacter keddieii 0 species 60920 85004 order 99 0 Bifidobacteriales 232591 1 25 Bifidobacteriaceae 0 31953 family 5063 24 232492 1 1135 1 genus 196082 0 Parascardovia denticolens 0 species 78258 1 1135 19 1 223333 Bifidobacterium 0 3870 genus 1678 0 Bifidobacterium animalis species 28025 1 1732 1 2871 0 Bifidobacterium angulatum species 1683 1374 1 species 1684 0 Bifidobacterium asteroides 1694 species Bifidobacterium pseudolongum 0 1827 1 2553 1 species 158787 Bifidobacterium scardovii 0 1 4995 Bifidobacterium adolescentis 0 1680 species 1687 species 0 Bifidobacterium coryneforme 425 1 1 77692 Bifidobacterium longum 0 species 216816 0 Bifidobacterium choerinum 35760 species 1 1128 28026 species Bifidobacterium pseudocatenulatum 0 45613 1 species 1681 Bifidobacterium bifidum 0 37150 1 0 Bifidobacterium dentium 1689 species 1 2011 638619 species 0 Bifidobacterium actinocoloniiforme 951 1 species 33905 0 Bifidobacterium thermophilum 1484 1 575 1 species 1691 0 Bifidobacterium indicum 1 20180 0 Bifidobacterium breve species 1685 16902 1 2 1686 species 5187 0 Bifidobacterium catenulatum Bifidobacterium kashiwanohense 0 subspecies 630129 1 11715 genus 196081 0 452 1 species 78259 0 Scardovia inopinata 452 1 Gardnerella 0 2701 5 genus 2 2509 1 species 2702 0 Gardnerella vaginalis 2504 1 1 128167 29 class 716 84998 Coriobacteriia 0 1643822 order 780 0 Eggerthellales 36333 1 15 14 1 35553 Eggerthellaceae 0 family 2919 1643826 79603 genus 0 1710 1 Denitrobacterium detoxificans 0 species 79604 1 1710 740 1 84162 genus 0 84163 species 0 Cryptobacterium curtum 740 1 2 5191 1 Adlercreutzia 0 447020 1 genus 5190 1 species 446660 0 Adlercreutzia equolifaciens 84111 104 genus 0 Eggerthella 8294 1 3 84112 species 0 Eggerthella lenta 6185 1 0 no rank 2648737 1 2005 Eggerthella sp. YY7918 0 species 502558 1 2005 2229 1 1981050 genus 0 1944646 species 0 Phoenicibacter massiliensis 2229 1 3807 1 2 84108 14 genus 0 Slackia Slackia heliotrinireducens 0 species 84110 1 3793 10663 1 3 644652 43 genus 0 Gordonibacter 1 5722 Gordonibacter urolithinfaciens 0 1335613 species species 1841863 Gordonibacter massiliensis 0 4898 1 13 1 91118 Coriobacteriales 0 425 order 84999 Coriobacteriaceae 0 84107 family 284 5 78140 1 1 2385 0 no rank 84113 1531429 species Coriobacteriaceae bacterium 68-1-3 0 2385 1 Collinsella 0 72 genus 102106 2 1 74075 74003 1 74426 species Collinsella aerofaciens 0 1 1396 0 genus 33870 1 1396 Coriobacterium glomerans 0 species 33871 7 1 12553 0 Atopobiaceae 150 family 1643824 4 10793 1 0 Olsenella 133925 104 genus 1 3032 0 Olsenella uli species 133926 0 Olsenella sp. Marseille-P2300 1805478 species 1 5132 2525 1 2638792 no rank 0 2525 1 species 712411 0 Olsenella sp. oral taxon 807 genus 2767353 0 1608 1 1 1608 0 Atopobium parvulum species 1382 0 Atopobium 1380 genus 1 2 1049 1 5 1497346 5 class Thermoleophilia 0 0 Solirubrobacterales 588673 38 order 4 1044 1 3 1 1006 Conexibacteraceae 0 family 6 320583 Conexibacter 0 27 genus 191494 2 1 1000 Conexibacter woesei 0 191495 species 1 973 Acidimicrobiia 0 84992 class 1 6 1535 1 0 Acidimicrobiales 8 order 84993 5 1 1534 7 family 84994 Acidimicrobiaceae 0 1 99 2 92 1 53634 genus 0 1 92 Acidimicrobium ferrooxidans 0 species 53635 0 2448023 family 2 1427 Ilumatobacter 0 4 genus 682522 2 1 1427 467094 species 0 Ilumatobacter coccineus 1423 1 0 Rubrobacteria 84995 class 25 6 1105 1 1080 1 5 84996 15 order Rubrobacterales 0 84997 8 family Rubrobacteraceae 0 1065 1 4 28 genus 42255 Rubrobacter 0 1 1057 3 species 49319 0 Rubrobacter xylanophilus 744 1 1 285 Rubrobacter radiotolerans 0 42256 species 4 1491 0 1752188 no rank species 1848255 Actinobacteria bacterium IMCC25003 0 214 1 species 1848755 Actinobacteria bacterium IMCC26077 0 255 1 1 315 0 Actinobacteria bacterium IMCC26103 1848756 species 707 1 species 1848754 0 Actinobacteria bacterium IMCC19121 200795 14 phylum 0 Chloroflexi 14752 1 43 Chloroflexia 0 32061 4 class 11 3527 1 1 3523 10 order 5 32064 Chloroflexales 0 0 suborder 1508595 4 2043 1508635 13 family 0 Roseiflexaceae 2043 1 4 Roseiflexus 0 120961 6 genus 3 2030 1 1490 1 no rank 2609473 0 0 Roseiflexus sp. RS-1 species 357808 1 1490 1 534 Roseiflexus castenholzii 0 species 120962 5 1475 0 suborder 1508594 5 1 1475 0 Chloroflexaceae family 8 1106 1 1467 4 genus 24 1107 0 Chloroflexus 497 1 species 152260 0 Chloroflexus aggregans 1108 473 species Chloroflexus aurantiacus 0 946 1 2 1 473 Chloroflexus sp. Y-400-fl 0 strain 480224 0 Ardenticatenia 1382928 25 class 5 1975 1 4 1950 1 0 Ardenticatenales 1382929 24 order 0 Ardenticatenaceae family 21 1382930 3 1 1926 1988031 genus 12 0 Candidatus Promineofilum 1905 1 2 0 Candidatus Promineofilum breve 1806508 species 1 1893 5 1236 1 0 Caldilineae 475962 class 2 1234 1 4 475963 order 3 Caldilineales 0 475964 2 family 0 Caldilineaceae 1231 1 3 Caldilinea 0 233191 genus 6 2 1229 1 1223 1 species 133453 0 Caldilinea aerophila class 292625 0 3227 6 1 3227 6 order 3 292629 0 Anaerolineales Anaerolineaceae 0 292628 2 family 5 3224 1 0 1324991 no rank 1 1438 1438 1 1889813 species Anaerolineaceae bacterium oral taxon 439 0 1 genus 2019482 Brevefilum 0 1 390 2 1 389 0 Brevefilum fermentans 1986204 species 1 1394 0 233189 genus 1 1394 Anaerolinea thermophila 0 167964 species 0 Thermomicrobia 43 class 189775 7 1 1047 0 189776 order 2 239 0 Thermomicrobiaceae 189777 11 family 2 239 1 499 genus 0 228 1 1 228 0 Thermomicrobium roseum 500 species 765 4 subclass 85000 0 765 1 4 85001 order 5 Sphaerobacterales 0 760 3 255728 suborder 0 1 760 3 7 family 85002 Sphaerobacteraceae 0 Sphaerobacter 0 2056 8 genus 2 753 1 745 1 species 2057 Sphaerobacter thermophilus 0 301297 class 3 0 Dehalococcoidia 3726 1 8 5 1 2901 0 Dehalococcoidales order 5 1202465 Dehalococcoidaceae 0 1202464 15 family 4 2896 1 1 2881 3 genus 7 61434 0 Dehalococcoides 2044 1 61435 species Dehalococcoides mccartyi 0 no rank 237581 0 830 1 1 830 Dehalococcoides sp. UCH007 0 species 1522671 670486 genus 0 822 2 1839801 species 0 Dehalogenimonas formicexedens 447 1 species 552810 0 Dehalogenimonas lykanthroporepellens 375 1 2 635 0 no rank 1859062 262406 20 genus Thermobaculum 0 635 1 2 1 615 0 Thermobaculum terrenum 166501 species 1239 phylum 271 Firmicutes 0 10127378 1 714 0 Tissierellia 1737404 class 1 19 20811 1 2 1192 0 no rank 1737407 1 1192 2 4 genus 1582879 0 Ezakiella Ezakiella massiliensis 0 1852374 species 1 1188 16 1 19618 Tissierellales 0 671 order 1737405 12 1 14579 0 Peptoniphilaceae family 1621 1570339 3038 1 3 165779 genus 4 0 Anaerococcus 1471 1 1870984 species Anaerococcus mediterraneensis 0 1563 1 33034 species Anaerococcus prevotii 0 1 2123 2 genus 10 150022 0 Finegoldia 1 2113 Finegoldia magna 0 species 1260 2 genus 1161127 Murdochiella 0 1 3531 2 3529 1 species 1852373 Murdochiella vaginalis 0 2524 1 2 543311 genus 14 0 Parvimonas 1 2510 0 Parvimonas micra species 33033 162289 7 genus 0 Peptoniphilus 1742 1 2 1 1735 0 2637196 no rank 1735 1 species 1912856 Peptoniphilus sp. ING2-D1G 0 1 4368 3 family 1 2042895 Gottschalkiaceae 0 1505664 2 genus 0 Gottschalkia 4367 1 2 1 4365 0 Gottschalkia acidurici species 1556 1676648 14 class Limnochordia 0 1437 1 5 1423 1 4 1676649 14 order Limnochordales 0 family 8 1676650 Limnochordaceae 0 1 1409 3 Limnochorda 0 genus 26 1676651 2 1 1401 1 1375 Limnochorda pilosa 0 species 1555112 0 84086 no rank 1 2153 2153 1 species 243899 0 endosymbiont 'TC1' of Trimyema compressum 2 835 0 33974 no rank 1930845 genus 8 0 Ndongobacter 835 1 2 827 1 species 1871025 Ndongobacter massiliensis 0 31 1330090 1 0 Negativicutes 909932 35 class 14 1 1256860 0 Selenomonadales order 136 909929 1 1233792 9 family 180 1843491 0 Selenomonadaceae 970 genus 257 0 Selenomonas 24934 1 6 3 10381 0 2637378 no rank 713030 species Selenomonas sp. oral taxon 136 0 5083 1 0 Selenomonas sp. oral taxon 920 species 1884263 1 2000 3298 1 712538 species 0 Selenomonas sp. oral taxon 478 1 4720 Selenomonas sputigena 0 species 69823 Selenomonas ruminantium 0 971 species 1 9576 1 1208678 2 31 genus 158846 0 Megamonas Megamonas hypermegale 0 158847 species 1 1208647 22932 1 4 1843490 family 25 0 Sporomusaceae 22907 1 3 365348 genus 47 0 Pelosinus Pelosinus fermentans 0 365349 species 1 11873 2629460 no rank 0 10987 1 10987 1 species 484770 Pelosinus sp. UFO1 0 30 order 1843488 Acidaminococcales 0 1 18272 5 28 family 909930 0 Acidaminococcaceae 1 18242 4 18214 1 3 904 93 genus Acidaminococcus 0 1 12320 0 Acidaminococcus intestini species 187327 905 species 0 Acidaminococcus fermentans 5801 1 54923 1 11 1843489 1621 order 0 Veillonellales 0 Veillonellaceae 2804 family 31977 10 1 53302 0 Negativicoccus 909928 2 genus 2 1408 1 species 1702287 Negativicoccus massiliensis 0 1406 1 2 1 17451 Megasphaera 0 2245 genus 906 1 15206 0 Megasphaera elsdenii 907 species 3 1 28363 0 Veillonella 25 genus 29465 1 23805 0 Veillonella parvula 29466 species 4533 1 species 248315 Veillonella rodentium 0 1 3276 2 genus 32 39948 0 Dialister Dialister pneumosintes 0 species 39950 1 3244 0 526524 class 10 28651 13 order 526525 0 Erysipelotrichales 1 28651 10 128827 family 64 0 Erysipelotrichaceae 28638 1 9 544447 no rank 0 12390 1 12390 1 species 1834207 Erysipelotrichaceae bacterium I46 0 Erysipelothrix 0 genus 34 1647 3 1 2876 1392 1 species 1648 Erysipelothrix rhusiopathiae 0 0 Erysipelothrix larvae 1514105 species 1 1450 Turicibacter 0 genus 14 191303 2 1 7637 7623 1 2638206 no rank 0 0 Turicibacter sp. H121 species 1712675 1 7623 Faecalibaculum 0 1729679 genus 37 2 5671 1 1702221 species 0 Faecalibaculum rodentium 5634 1 1 890854 428 593 class 91061 Bacilli 0 477527 1 264 1385 order 615 Bacillales 0 260 family 186822 0 Paenibacillaceae 1 91934 46 76818 1 36 44249 957 genus Paenibacillus 0 2346 1 species 169760 Paenibacillus stellifer 0 Paenibacillus kribbensis 0 172713 species 1 1746 2145 1 species 414771 0 Paenibacillus donghaensis 1 3449 Paenibacillus borealis 0 160799 species 2044880 species group 0 2661 1 2661 1 483937 species Paenibacillus riograndensis 0 1462996 species 0 Paenibacillus yonginensis 1615 1 0 Paenibacillus terrae 159743 species 1 1755 13 26534 0 185978 no rank 1667 1 1536774 species 0 Paenibacillus sp. FSL H7-0357 324057 species 0 Paenibacillus sp. JDR-2 2129 1 1870819 species 0 Paenibacillus sp. BIHB4019 1659 1 species 2069255 0 Paenibacillus sp. lzh-N1 1854 1 1 2278 Paenibacillus sp. FSL P4-0081 0 1536769 species 1536775 species Paenibacillus sp. FSL H7-0737 0 1819 1 1 1189 Paenibacillus sp. Y412MC10 0 481743 species 2976 1 1536771 species Paenibacillus sp. FSL R5-0912 0 1 1002 Paenibacillus sp. 32O-W 0 species 1695218 2588 1 species 1566358 0 Paenibacillus sp. IHBB 10380 species 1536773 0 Paenibacillus sp. FSL R7-0331 2456 1 2297 1 species 1536770 0 Paenibacillus sp. FSL R5-0345 1 2620 Paenibacillus sp. FSL R7-0273 0 species 1536772 Paenibacillus xylanexedens 0 species 528191 1 2159 2025 1 1763538 species Paenibacillus crassostreae 0 2454 1 189425 species 0 Paenibacillus graminis 365617 species Paenibacillus sabinae 0 1863 1 species 1870820 0 Paenibacillus ihbetae 2449 1 1 2456 0 Paenibacillus bovis species 1616788 Paenibacillus larvae 0 1464 species 1 2229 0 Paenibacillus durus species 44251 1 2607 1614 1 59893 species Paenibacillus peoriae 0 1406 species Paenibacillus polymyxa 0 6044 1 61624 species 0 Paenibacillus mucilaginosus 2454 1 1178515 species Paenibacillus swuensis 0 1079 1 species 189426 Paenibacillus odorifer 0 1750 1 Paenibacillus beijingensis 0 species 1126833 1 1385 species 162209 0 Paenibacillus naphthalenovorans 1042 1 3 4138 0 no rank 85151 3 1 4138 0 Aneurinibacillus 8 genus 55079 1500254 species 0 Aneurinibacillus soli 2343 1 0 no rank 2642329 1 1787 species 1450761 0 Aneurinibacillus sp. XH2 1787 1 1844 1 2 76632 13 genus 0 Thermobacillus 1831 1 377615 species Thermobacillus composti 0 1 8874 4 genus 29 55080 Brevibacillus 0 Brevibacillus brevis 0 species 1393 1 2174 5591 1 1465 species 0 Brevibacillus laterosporus 0 Brevibacillus formosus species 54913 1 1080 9 1 8103 Alicyclobacillaceae 0 family 53 186823 0 Alicyclobacillus 29330 genus 11 2 1701 1 405212 species 0 Alicyclobacillus acidocaldarius 1690 1 1129704 33 genus Kyrpidia 0 3909 1 3 Kyrpidia tusciae 0 33943 species 1 662 3214 1 2055160 species Kyrpidia sp. EA-1 0 60 genus 432330 0 Tumebacillus 1 2440 3 Tumebacillus algifaecis 0 1214604 species 1 921 Tumebacillus avium 0 1903704 species 1 1459 1 88810 40 2011 family 90964 Staphylococcaceae 0 Macrococcus 0 13 genus 69965 4 1 4812 0 2619255 no rank 1 2507 Macrococcus sp. IME1552 0 1898474 species 1 2507 species 1855823 Macrococcus canis 0 1143 1 1149 1 69966 species Macrococcus caseolyticus 0 1279 1156 genus 0 Staphylococcus 80009 1 33 0 Staphylococcus hyicus species 1284 1 1534 2124 1 91994 no rank 0 1 2124 0 Staphylococcus sp. AntiMn-1 species 1715860 46127 species 0 Staphylococcus felis 1008 1 Staphylococcus hominis 0 species 1290 1 2559 Staphylococcus simulans 0 species 1286 1 1849 4972 1 species 45972 Staphylococcus pasteuri 0 2207 1 29385 species 0 Staphylococcus saprophyticus 3342 1 308354 species Staphylococcus simiae 0 0 Staphylococcus kloosii 29384 species 1 1469 1 4171 0 Staphylococcus epidermidis 1282 species 1533 1 species 1292 0 Staphylococcus warneri 8648 1 species 1280 Staphylococcus aureus 0 1 1246 Staphylococcus muscae 0 species 1294 Staphylococcus cohnii 0 29382 species 1 1903 0 Staphylococcus piscifermentans species 70258 1 1845 1 3661 Staphylococcus equorum 0 246432 species 61015 species Staphylococcus succinus 0 1677 1 2029 1 species 28035 0 Staphylococcus lugdunensis 1 2368 0 Staphylococcus sciuri species 1296 4409 1 1288 species 0 Staphylococcus xylosus 283734 species Staphylococcus pseudintermedius 0 2074 1 0 Staphylococcus capitis species 29388 1 2304 species 1283 Staphylococcus haemolyticus 0 3039 1 species 1281 0 Staphylococcus carnosus 2496 1 2467 1 985002 species Staphylococcus argenteus 0 0 Staphylococcus lutrae species 155085 1 921 species 643214 0 Staphylococcus stepanovicii 2299 1 2434 1 species 70255 Staphylococcus condimenti 0 0 Staphylococcus nepalensis species 214473 1 2443 0 Staphylococcus pettenkoferi 170573 species 1 719 1295 species 0 Staphylococcus schleiferi 1791 1 Staphylococcus agnetis 0 species 985762 1 1312 genus 45669 0 1333 1 1333 1 species 407035 Salinicoccus halodurans 0 645 1 2005363 genus 0 Auricoccus indicus 0 species 1849491 1 645 186824 family 4 Thermoactinomycetaceae 0 6614 1 4 22 1 genus 292635 0 Laceyella 1677050 genus 46 0 Novibacillus 6588 1 2 Novibacillus thermophilus 0 1471761 species 1 6542 no rank 539002 0 7003 9 5388 7 539742 no rank 0 33986 genus 124 0 Exiguobacterium 5388 1 7 3574 4 2644629 no rank 0 1 835 Exiguobacterium sp. MH3 0 1399115 species Exiguobacterium sp. U13-1 0 1849031 species 1 1116 1224749 species Exiguobacterium sp. ZWU0009 0 1126 1 360911 species Exiguobacterium sp. AT1b 0 497 1 1 740 0 Exiguobacterium sibiricum species 332410 1 950 Exiguobacterium antarcticum 0 132920 species 2 1615 0 539738 no rank 2 1615 1 Gemella 0 1378 1 genus 1614 1 2624949 no rank 0 0 Gemella sp. oral taxon 928 species 1785995 1 1614 0 Listeriaceae 186820 110 family 9 20461 1 2755 genus 1 Brochothrix 0 1309 1 2 1308 1 species 2756 Brochothrix thermosphacta 0 0 Listeria 1637 162 genus 6 19042 1 0 Listeria seeligeri species 1640 1 3154 Listeria welshimeri 0 1643 species 1 2035 1 7629 0 Listeria monocytogenes species 1639 3099 1 species 1638 0 Listeria ivanovii 0 Listeria innocua species 1642 1 2963 0 Bacillaceae 186817 555 family 118 220445 1 0 45667 genus 2 2656 1 1271 0 Halobacillus halophilus 1570 species Halobacillus mangrovi 0 402384 species 1 1385 3 1 4402 Fictibacillus 0 6 genus 1329200 1 2297 0 Fictibacillus arsenicus species 255247 1 2099 0 Fictibacillus phosphorivorans species 1221500 1 8400 15 299 genus 129337 Geobacillus 0 3129 6 2642459 no rank 0 1327 1 species 581103 0 Geobacillus sp. Y4.1MC1 Geobacillus sp. WCH70 0 471223 species 1 919 1 140 0 Geobacillus sp. Y412MC61 species 544556 1 175 Geobacillus sp. C56-T3 0 691437 species species 1233873 Geobacillus sp. GHH01 0 384 1 0 Geobacillus sp. Y412MC52 species 550542 1 184 1 750 Geobacillus stearothermophilus 0 species 1422 1921421 species 0 Geobacillus genomosp. 3 535 1 4 2273 0 1505648 species group 1 374 Geobacillus kaustophilus 0 species 1462 Geobacillus thermocatenulatus 0 33938 species 1 322 1166 1 33941 species 0 Geobacillus thermoleovorans 411 1 species 169283 Geobacillus lituanicus 0 species 33940 0 Geobacillus thermodenitrificans 1009 1 405 1 species 129338 0 Geobacillus subterraneus 0 Parageobacillus 5 genus 1906945 2 1 1196 1 1191 0 Parageobacillus thermoglucosidasius 1426 species genus 29331 0 4801 1 0 Amphibacillus xylanus species 1449 1 4801 9901 5 genus 2675234 0 1 1430 0 Bacillus halodurans species 86665 1 2806 Bacillus krulwichiae 0 species 199441 2207 1 species 300825 0 Bacillus lehensis 1792 1 79885 species Bacillus pseudofirmus 0 1666 1 species 79880 Bacillus clausii 0 1 1639 2 genus 1 459532 0 Terribacillus 1 1638 0 Terribacillus aidingensis 586416 species genus 351195 0 647 1 647 1 species 1230341 Salimicrobium jeotgali 0 genus 78 84406 Virgibacillus 0 1 13968 7 3210 1 species 163877 0 Virgibacillus necropolis 4267 2 no rank 2620237 0 2375 1 species 1911587 Virgibacillus sp. 6R 0 1892 1 403957 species Virgibacillus sp. SK37 0 1 2696 0 Virgibacillus pantothenticus 1473 species 0 Virgibacillus halodenitrificans species 1482 1 2088 species 2017483 Virgibacillus phasianinus 0 1629 1 1 1994 2 1 genus 175304 0 Lentibacillus 0 Lentibacillus amyloliquefaciens species 1472767 1 1993 1386 4344 genus Bacillus 0 132966 1 58 841 1 1664069 species Bacillus glycinifermentans 0 52860 10 species group 86661 0 Bacillus toyonensis 0 species 155322 1 2085 0 2750818 no rank 3 6040 2228 1 species 1839798 Bacillus sp. FDAARGOS_235 0 2036 1 species 1892404 0 Bacillus sp. ABP14 1776 1 2053832 species 0 Bacillus sp. HBCD-sjtu 1888 1 1392 species 0 Bacillus anthracis 1 16266 Bacillus thuringiensis 0 1428 species 1919 1 658666 species Bacillus bombysepticus 0 1 16822 Bacillus cereus 0 1396 species 0 Bacillus cytotoxicus species 580165 1 1458 1 6382 Bacillus mycoides 0 species 1405 1 2240 0 Bacillus weihaiensis species 1547283 1 1077 Bacillus smithii 0 1479 species 185979 no rank 0 16347 19 Bacillus sp. (in: Bacteria) 0 species 1409 1 227 1565991 species 0 Bacillus sp. X1(2014) 2828 1 0 Bacillus sp. SJ-10 563169 species 1 545 1 792 Bacillus sp. OxB-1 0 98228 species 1 505 0 Bacillus sp. JS 1127744 species 666 1 species 2026248 Bacillus sp. 1s-1 0 756828 species 0 Bacillus sp. WP8 1724 1 1 1992 Bacillus sp. 1NLA3E 0 species 666686 1 665 0 Bacillus sp. H15-1 1856406 species 182 1 species 1574141 0 Bacillus sp. YP1 69 1 1628753 species Bacillus sp. LM 4-2 0 196 1 2049935 species 0 Bacillus sp. Lzh-5 Bacillus sp. 275 0 species 1941347 1 596 455 1 2009331 species 0 Bacillus sp. MD-5 species 1570330 Bacillus sp. BH072 0 179 1 0 Bacillus sp. Pc3 species 1446792 1 647 2035 1 species 1827146 0 Bacillus sp. IHB B 7164 1 1013 0 Bacillus sp. FJAT-14266 1837130 species 1774743 species 0 Bacillus sp. SDLI1 1031 1 1415 1 1413 species Bacillus cellulosilyticus 0 2334 1 species 33932 Bacillus cohnii 0 2616 1 561879 species 0 Bacillus safensis species 324767 Bacillus infantis 0 1318 1 Bacillus endophyticus 0 135735 species 1 4190 1398 species Bacillus coagulans 0 3358 1 79883 species Bacillus horikoshii 0 1714 1 1 1010 Bacillus methanolicus 0 species 1471 1 1776 0 species group 1792192 1 1776 0 Bacillus altitudinis species 293387 Bacillus beveridgei 0 species 632773 1 619 species 1404 0 Bacillus megaterium 6019 1 1 6435 Bacillus pumilus 0 species 1408 0 Bacillus xiamenensis 1178537 species 1 1401 0 Bacillus gibsonii 79881 species 1 234 653685 species group 0 16207 9 1423 species Bacillus subtilis 0 6222 1 136 1 species 72361 0 Bacillus vallismortis 1 1168 0 Bacillus licheniformis species 1402 1 1573 Bacillus atrophaeus 0 species 1452 4625 3 species subgroup 1938374 0 1632 1 species 492670 Bacillus velezensis 0 1 867 Bacillus siamensis 0 species 659243 Bacillus amyloliquefaciens 0 1390 species 1 2126 1 902 Bacillus paralicheniformis 0 species 1648923 1 1581 0 Bacillus sonorensis species 119858 2544 1 species 86664 Bacillus flexus 0 2067 1 412384 species 0 Bacillus aryabhattai 182709 3 genus 0 Oceanobacillus 3143 1 2 1 3140 Oceanobacillus iheyensis 0 species 182710 400634 59 genus 0 Lysinibacillus 15562 1 5 3313 1 1145276 species 0 Lysinibacillus varians 1911 1 species 28031 0 Lysinibacillus fusiformis 2636778 no rank 0 3237 1 3237 1 species 2072025 Lysinibacillus sp. YS11 0 Lysinibacillus sphaericus 0 species 1421 1 7042 2 5080 0 genus 2675229 Bacillus simplex 0 species 1478 1 3672 1408 1 species 264697 Bacillus muralis 0 2 5940 0 2675230 genus Bacillus kochii 0 species 859143 1 3547 1 2393 0 Bacillus oceanisediminis species 665099 0 Aeribacillus genus 10 1055323 2 1 1552 1 1542 Aeribacillus pallidus 0 33936 species 150247 14 genus 0 Anoxybacillus 6043 1 6 Anoxybacillus gonensis 0 198467 species 1 1391 0 Anoxybacillus amylolyticus 294699 species 1 1179 1714 2 2639704 no rank 0 845 1 1490052 species 0 Anoxybacillus sp. B2M1 869 1 species 1490057 Anoxybacillus sp. B7M1 0 0 Anoxybacillus flavithermus species 33934 1 1745 42 family 186818 0 Planococcaceae 1 32357 26 648800 genus 7 Solibacillus 0 5883 1 3 1 3287 0 Solibacillus silvestris 76853 species 1 2589 0 2637870 no rank Solibacillus sp. R5-41 0 2048654 species 1 2589 genus 5 157226 0 Jeotgalibacillus 1 2052 2 2047 1 1508404 species 0 Jeotgalibacillus malaysiensis genus 1649 0 2666 1 2644826 no rank 0 2666 1 1 2666 0 Kurthia sp. 11kri321 1750719 species genus 69 1372 Planococcus 0 1 12117 12 1759 2 2662419 no rank 0 species 1526927 0 Planococcus sp. PAMC 21323 924 1 0 Planococcus sp. MB-3u-03 2058136 species 1 835 1 920 0 Planococcus halocryophilus species 1215089 Planococcus plakortidis 0 1038856 species 1 569 1506 1 species 414778 0 Planococcus donghaensis 161360 species Planococcus antarcticus 0 719 1 1 1723 Planococcus maritimus 0 species 192421 0 Planococcus faecalis species 1598147 1 1514 Planococcus kocurii 0 species 1374 1 1300 1 618 0 Planococcus rifietoensis species 200991 1302659 species Planococcus sp. L10.15 0 1420 1 648802 genus 1 0 Rummeliibacillus 1668 1 2 1 1667 Rummeliibacillus stabekisii 0 species 241244 7929 1 5 1569 genus 83 Sporosarcina 0 1571 species Sporosarcina ureae 0 4656 1 0 no rank 2647733 2 1714 Sporosarcina sp. P33 0 1930764 species 1 924 Sporosarcina sp. P37 0 1930546 species 1 790 0 Sporosarcina psychrophila 1476 species 1 1476 1 1185 2 family 3 186821 0 Sporolactobacillaceae 1182 1 663587 no rank 0 1 1182 [Bacillus] selenitireducens 0 species 85683 0 Lactobacillales 186826 order 5871 163 412734 1 186828 family 30 0 Carnobacteriaceae 16740 1 11 5 1 11641 Carnobacterium 0 genus 28 2747 1429 1 147709 species 0 Carnobacterium inhibens 2196 1 2751 species 0 Carnobacterium maltaromaticum 2 7988 0 257487 no rank 1564681 species Carnobacterium sp. CP1 0 4766 1 Carnobacterium sp. 17-4 0 208596 species 1 3222 Jeotgalibaca 0 genus 14 1470540 3 1 2910 1 1273 Jeotgalibaca dankookensis 0 species 708126 0 2621505 no rank 1 1623 0 Jeotgalibaca sp. PTS2502 1903686 species 1 1623 1 genus 191769 Marinilactibacillus 0 1 2159 2 0 no rank 2632303 1 2158 species 1911586 0 Marinilactibacillus sp. 15R 2158 1 58 1 87704 Lactobacillaceae 0 347 family 33958 genus 2759736 0 5187 3 1597 species Lactobacillus paracasei 0 1359 1 species 47715 0 Lactobacillus rhamnosus 1550 1 1 2278 0 Lactobacillus casei 1582 species 0 genus 2767842 3 3765 1949 1 1590 species 0 Lactobacillus plantarum Lactobacillus pentosus 0 species 1589 1 1274 species 60520 0 Lactobacillus paraplantarum 542 1 2 2259 0 genus 2767889 1610 species Lactobacillus coryniformis 0 965 1 1294 1 species 375175 0 Lactobacillus backii 3052 3 genus 2742598 0 1 530 Lactobacillus fermentum 0 species 1613 species 97478 Lactobacillus mucosae 0 1090 1 1598 species Lactobacillus reuteri 0 1432 1 0 2767892 genus 1 1088 1088 1 species 240427 Lactobacillus paracollinoides 0 2745 2 2767885 genus 0 1 1704 0 Lactobacillus sakei 1599 species 0 Lactobacillus curvatus species 28038 1 1041 10556 4 genus 2767887 0 778 1 species 89059 0 Lactobacillus acidipiscis Lactobacillus ruminis 0 1623 species 1 2283 1 6275 0 Lactobacillus salivarius 1624 species species 1601 Lactobacillus agilis 0 1220 1 0 genus 2767886 3 1685 Lactobacillus zymae 0 267363 species 1 271 1 256 0 Lactobacillus koreensis species 637971 Lactobacillus brevis 0 species 1580 1 1158 2767890 genus 0 1080 1 1 1080 Lactobacillus hokkaidonensis 0 species 1193095 1578 1947 genus Lactobacillus 0 30903 1 16 1 1582 0 Lactobacillus gallinarum 52242 species 0 no rank 2620435 4 5072 2108362 species Lactobacillus sp. D1501 0 258 1 species 2099789 Lactobacillus sp. CBA3606 0 682 1 1 1486 0 Lactobacillus sp. wkB8 1545702 species Lactobacillus sp. CBA3605 0 species 2099788 1 2646 1 972 Lactobacillus jensenii 0 109790 species 2482 1 1579 species 0 Lactobacillus acidophilus 1 2202 0 Lactobacillus amylovorus 1604 species species 1600 Lactobacillus acetotolerans 0 626 1 1 1702 Lactobacillus delbrueckii 0 species 1584 species 267818 Lactobacillus kefiranofaciens 0 1623 1 2632 1 species 1587 Lactobacillus helveticus 0 1596 species Lactobacillus gasseri 0 3044 1 Lactobacillus amylolyticus 0 83683 species 1 688 species 33959 Lactobacillus johnsonii 0 6331 1 1253 genus 8 0 Pediococcus 7506 1 6 788 1 species 114090 0 Pediococcus inopinatus 1255 species Pediococcus pentosaceus 0 2015 1 1383 1 51663 species 0 Pediococcus damnosus 1670797 species group 0 2431 1 2431 1 1254 species 0 Pediococcus acidilactici 187452 species Pediococcus claussenii 0 881 1 0 2767893 genus 3 3726 1 934 0 Lactobacillus buchneri species 1581 1138822 species Lactobacillus curieae 0 1671 1 1 1121 0 Lactobacillus parabuchneri 152331 species 1 582 0 genus 2767877 582 1 148814 species Lactobacillus kunkeei 0 0 2767879 genus 6 10791 0 Lactobacillus ginsenosidimutans 1007676 species 1 1381 Lactobacillus farciminis 0 species 1612 1 2059 Lactobacillus crustorum 0 species 392416 1 1887 1 2300 Lactobacillus allii 0 species 1847728 1 2256 0 Lactobacillus alimentarius species 1602 908 1 1074467 species Lactobacillus heilongjiangensis 0 2767876 genus 0 961 1 1 961 0 Lactobacillus amylophilus species 1603 2767881 genus 0 1471 2 1 867 0 Lactobacillus sanfranciscensis 1625 species 604 1 species 53444 0 Lactobacillus lindneri 0 Leuconostocaceae 6 family 81850 17 1 13676 9031 1 9 1243 37 genus Leuconostoc 0 0 Leuconostoc kimchii species 136609 1 1534 Leuconostoc gelidum 0 species 1244 1 1137 1 2228 Leuconostoc carnosum 0 species 1252 species 1246 0 Leuconostoc lactis 930 1 1 725 0 no rank 2685106 725 1 species 979982 Leuconostoc sp. C2 0 1 1547 0 Leuconostoc mesenteroides species 1245 305 1 255248 species 0 Leuconostoc garlicum 588 1 33964 species 0 Leuconostoc citreum 0 genus 46254 1 794 1 794 Oenococcus oeni 0 1247 species Weissella 0 5 genus 46255 6 1 3845 1 859 Weissella ceti 0 759620 species species 1249 Weissella paramesenteroides 0 389 1 Weissella cibaria 0 137591 species 1 747 0 Weissella koreensis species 165096 1 1111 0 Weissella jogaejeotgali species 1631871 1 734 1 1741 0 263855 no rank 1 1741 Lactobacillales bacterium 0 species 1993866 0 Aerococcaceae 4 family 186827 8 1 6359 7 1 6355 Aerococcus 0 128 genus 1375 0 Aerococcus sanguinicola species 119206 1 578 87541 species Aerococcus christensenii 0 1190 1 Aerococcus viridans 0 species 1377 1 1270 Aerococcus urinae 0 1376 species 1 1022 species 51665 Aerococcus urinaeequi 0 1233 1 species 128944 0 Aerococcus urinaehominis 934 1 family 54 81852 0 Enterococcaceae 1 63154 18 0 genus 51668 1 3696 3696 1 51669 species Tetragenococcus halophilus 0 4324 1 3 2737 25 genus 0 Vagococcus 1 2287 0 Vagococcus penaei 633807 species species 519472 Vagococcus teuberi 0 2012 1 53286 1 12 1350 3212 genus 0 Enterococcus 26613 1 species 1352 0 Enterococcus faecium 37734 species 0 Enterococcus casseliflavus 1337 1 1741 1 species 417368 Enterococcus thailandicus 0 1924 1 species 2005703 0 Enterococcus wangshanyuanii 1 2699 0 Enterococcus hirae 1354 species 1 2143 0 Enterococcus mundtii 53346 species 1351 species 0 Enterococcus faecalis 7267 1 0 Enterococcus durans 53345 species 1 2283 3 4067 0 2608891 no rank 935 1 species 2060306 0 Enterococcus sp. FDAARGOS_163 2060307 species Enterococcus sp. FDAARGOS_375 0 1978 1 0 Enterococcus sp. CR-Ec1 2057791 species 1 1154 0 33969 genus 1 1794 33970 species 0 Melissococcus plutonius 1794 1 0 Streptococcaceae family 3709 1300 49 1 217489 genus 239 1357 0 Lactococcus 1 11148 5 1 1954 0 Lactococcus garvieae species 1363 1364 species 0 Lactococcus piscium 903 1 1957 1 species 1366 Lactococcus raffinolactis 0 6095 1 1358 species 0 Lactococcus lactis 8577 genus 1301 Streptococcus 0 1 202632 43 1511 1 59310 species Streptococcus macedonicus 0 species 1888195 Streptococcus himalayensis 0 617 1 3920 1 1314 species Streptococcus pyogenes 0 0 Streptococcus equinus 1335 species 1 3260 1 1077 0 Streptococcus pseudopneumoniae 257758 species species group 671232 0 46968 3 0 Streptococcus constellatus 76860 species 1 9272 1 35288 Streptococcus anginosus 0 1328 species Streptococcus intermedius 0 species 1338 1 2408 1 2066 Streptococcus sanguinis 0 1305 species 1 4335 Streptococcus gordonii 0 species 1302 7 11568 0 no rank 2608887 1 1462 0 Streptococcus sp. oral taxon 431 712633 species 1527 1 species 1156431 Streptococcus sp. I-G2 0 1 4041 Streptococcus sp. FDAARGOS_192 0 species 1839799 1 1273 0 Streptococcus sp. A12 species 1759399 1202 1 1319 species 0 Streptococcus sp. 'group B' 0 Streptococcus sp. NPS 308 species 1902136 1 827 1 1236 Streptococcus sp. I-P16 0 species 1156433 7202 1 102684 species 0 Streptococcus infantarius 1 4392 0 Streptococcus oralis species 1303 1318 species Streptococcus parasanguinis 0 2548 1 45634 species Streptococcus cristatus 0 2497 1 Streptococcus merionis 0 400065 species 1 1741 197614 species Streptococcus pasteurianus 0 6574 1 28037 species 0 Streptococcus mitis 4764 1 1 12947 Streptococcus salivarius 0 1304 species species 1308 0 Streptococcus thermophilus 2701 1 3917 1 315405 species Streptococcus gallolyticus 0 1 5678 0 Streptococcus lutetiensis species 150055 2168 1 species 1349 0 Streptococcus uberis 1 3149 Streptococcus pneumoniae 0 1313 species 23649 1 1307 species 0 Streptococcus suis 1113 1 1825069 species Streptococcus marmotae 0 3243 1 1346 species 0 Streptococcus iniae 1604 1 species 1811193 Streptococcus pantholopis 0 1117 1 species 82348 0 Streptococcus pluranimalium 1 14200 Streptococcus agalactiae 0 1311 species 1 3005 Streptococcus acidominimus 0 1326 species species 1309 0 Streptococcus mutans 2249 1 species 1348 Streptococcus parauberis 0 3095 1 119603 species group 0 4185 2 Streptococcus equi 0 1336 species 1 2370 0 Streptococcus dysgalactiae 1334 species 1 1815 0 Streptococcus halotolerans species 1814128 1 995 0 Clostridia 296 class 186801 217 1 7852276 0 Clostridiales 9735 order 186802 162 1 7797643 0 Symbiobacteriaceae 543349 family 5 3 2110 1 2 1 2105 0 Symbiobacterium genus 14 2733 1 2091 0 Symbiobacterium thermophilum species 2734 0 Oscillospiraceae 216572 5 family 3 13043 1 13038 1 2 459786 34 genus 0 Oscillibacter 1 13004 Oscillibacter valericigenes 0 species 351091 541000 365 family Ruminococcaceae 0 3050629 1 13 34875 1 2 946234 genus 71 Flavonifractor 0 species 292800 Flavonifractor plautii 0 34804 1 0 Ethanoligenens 16 genus 253238 2 1 8635 Ethanoligenens harbinense 0 253239 species 1 8619 2 2966017 1 0 Faecalibacterium 216851 genus 2456 1 2963561 Faecalibacterium prausnitzii 0 species 853 1 8126 0 no rank 2305133 8126 1 species 1572656 0 Ruminococcaceae bacterium CPB6 0 Herbivorax genus 1890281 1 4 0 Ruminococcus 1263 genus 59 3 28975 1 species 1160721 0 Ruminococcus bicirculans 18612 1 species 1264 0 Ruminococcus albus 10304 1 552397 no rank 0 3632 1 0 [Clostridium] cellulosi 29343 species 1 3632 3 1 1309 0 Syntrophomonadaceae 3 family 68298 genus 862 0 749 1 749 1 863 species 0 Syntrophomonas wolfei 0 129001 genus 1 557 0 Syntrophothermus lipocalidus 86170 species 1 557 22 family 31984 Heliobacteriaceae 0 1 2317 3 2 1 2295 0 Heliobacterium 58 genus 2697 Heliobacterium modesticaldum 0 species 35701 1 2237 186807 family 111 0 Peptococcaceae 39861 1 27 2 1051 1 Candidatus Desulforudis 0 471826 1 genus 1050 1 471827 species 0 Candidatus Desulforudis audaxviator 0 Dehalobacterium 1 genus 51514 2 1 3083 1 3082 Dehalobacterium formicoaceticum 0 species 51515 5 8535 1 Desulfotomaculum 0 1562 genus 88 2194 1 1833852 species Desulfotomaculum ferrireducens 0 2937 1 species 59610 Desulfotomaculum reducens 0 1 1869 Desulfotomaculum ruminis 0 1564 species 1447 1 1565 species 0 Desulfotomaculum nigrificans 4674 1 4 56112 genus 34 0 Dehalobacter species 55583 Dehalobacter restrictus 0 1692 1 2635733 no rank 0 2948 2 0 Dehalobacter sp. CF 1131462 species 1 1536 1 1412 0 Dehalobacter sp. DCA 1147129 species 51196 genus 0 1099 1 1099 1 51197 species Syntrophobotulus glycolicus 0 genus 114 79206 0 Desulfosporosinus 1 7730 4 1 2015 Desulfosporosinus meridiei 0 79209 species 0 Desulfosporosinus orientis 1563 species 1 2641 1 2960 0 Desulfosporosinus acidiphilus species 885581 1563 1 genus 2282740 0 1563 1 species 102134 0 Desulfotomaculum gibsoniae 0 Desulfitobacterium 40 genus 36853 5 1 9183 3320 1 species 49338 0 Desulfitobacterium hafniense 1977 1 species 142877 0 Desulfitobacterium metallireducens 0 Desulfitobacterium dichloroeliminans species 233055 1 1886 36854 species 0 Desulfitobacterium dehalogenans 1960 1 0 genus 2282742 1 1181 1181 1 58138 species 0 Desulfotomaculum acetoxidans 0 genus 278993 1 1651 1651 1 863643 species Thermincola potens 0 186806 family 14 0 Eubacteriaceae 18679 1 4 1 16879 2 828 genus 1730 0 Eubacterium 1 16051 Eubacterium limosum 0 species 1736 0 33951 genus 1 1786 33952 species Acetobacterium woodii 0 1786 1 27 1 4118506 Lachnospiraceae 0 family 3111 186803 112 genus 207244 0 Anaerostipes 1 243476 2 species 649756 0 Anaerostipes hadrus 243364 1 1 86942 0 genus 2719313 [Clostridium] bolteae 0 species 208479 1 86942 0 2569097 genus 1 161766 species 39488 0 [Eubacterium] hallii 161766 1 572511 genus 114 Blautia 0 160938 1 3 1322 species Blautia hansenii 0 107064 1 53760 1 no rank 2648079 0 Blautia sp. YL58 0 species 1796616 1 53760 genus 12 2039240 0 Anaerotignum 1 4444 2 0 Anaerotignum propionicum species 28446 1 4432 Roseburia 0 15 genus 841 2 1 223991 1 223976 0 Roseburia hominis 301301 species Cellulosilyticum 0 698776 10 genus 2 8247 1 29360 species 0 Cellulosilyticum lentocellum 8237 1 1 7125 2 genus 7 1663717 Herbinix 0 7118 1 species 1679721 0 Herbinix luporum 1 312964 0 genus 28050 312964 1 39485 species [Eubacterium] eligens 0 0 186928 no rank 2 2749861 32484 1 species 712991 Lachnospiraceae bacterium oral taxon 500 0 39491 species [Eubacterium] rectale 0 2717377 1 1506553 442 genus Lachnoclostridium 0 108654 1 4 1 49090 0 no rank 2608895 0 Lachnoclostridium sp. YL32 1834196 species 1 49090 0 Lachnoclostridium phocaeense species 1871021 1 48078 Lachnoclostridium phytofermentans 0 66219 species 1 11044 genus 2719231 0 23778 1 23778 1 84030 species 0 [Clostridium] saccharolyticum 3 23209 1 Butyrivibrio 0 830 genus 35 11799 1 185008 species Butyrivibrio hungatei 0 Butyrivibrio proteoclasticus 0 43305 species 1 11375 40491 12 2304686 family 0 0 Ruminiclostridium genus 314 1508657 2 1 5450 1521 species [Clostridium] cellulolyticum 0 5136 1 no rank 2305130 0 17639 1 species 1834198 0 Ruminiclostridium sp. KB18 17639 1 2304693 genus 0 2432 1 1 2432 0 [Clostridium] thermosuccinogenes 84032 species 0 Mageeibacillus 1637257 genus 1 2 2506 1 2505 1 species 884684 0 Mageeibacillus indolicus genus 2304692 0 8182 3 2545 1 species 1677857 Herbivorax saccincola 0 2953 1 1515 species 0 Ruminiclostridium thermocellum 2684 1 288965 species 0 [Clostridium] clariflavum 2472 1 2304691 genus 0 2472 1 species 1510 0 [Clostridium] stercorarium 0 Fastidiosipila 236752 4 genus 2 1810 1 236753 species 0 Fastidiosipila sanguinis 1806 1 31979 296 family 0 Clostridiaceae 269802 1 41 0 Geosporobacter 390805 genus 13 2 3211 1 0 Geosporobacter ferrireducens 1424294 species 1 3198 Mordavella 0 1981033 genus 1 193 genus 3 114627 Alkaliphilus 0 1 4335 3 1 2364 0 Alkaliphilus metalliredigens species 208226 0 Alkaliphilus oremlandii 461876 species 1 1968 27 genus 49082 Candidatus Arthromitus 0 1 3914 4 3887 3 2638829 no rank 0 1 893 Candidatus Arthromitus sp. SFB-mouse 0 49118 species 1 1098 Candidatus Arthromitus sp. SFB-mouse-NL 0 species 1508644 0 Candidatus Arthromitus sp. SFB-rat-Yit 1041504 species 1 1896 257853 1 30 1485 genus 2107 0 Clostridium Clostridium butyricum 0 species 1492 1 10967 1 4506 Clostridium bornimense 0 1216932 species 1 7731 Clostridium saccharobutylicum 0 169679 species 26636 2 2614128 no rank 0 0 Clostridium sp. BNL1100 755731 species 1 3831 species 1042156 0 Clostridium sp. SY8519 22805 1 5639 1 46867 species Clostridium chauvoei 0 34986 1 1491 species Clostridium botulinum 0 3908 1 species 84023 0 Clostridium autoethanogenum Clostridium sporogenes 0 1509 species 1 4792 6776 1 1548 species Clostridium scatologenes 0 0 Clostridium formicaceticum species 1497 1 3253 1 3726 0 Clostridium novyi 1542 species 7788 1 species 1493 0 Clostridium cellulovorans species 238834 Clostridium estertheticum 0 5667 1 species 84022 0 Clostridium aceticum 3107 1 7831 1 species 217159 Clostridium carboxidivorans 0 1 8568 Clostridium kluyveri 0 1534 species 1 8394 0 Clostridium tetani 1513 species 3718 1 species 1519 Clostridium tyrobutyricum 0 Clostridium acetobutylicum 0 1488 species 1 3081 0 Clostridium ljungdahlii species 1538 1 3787 1 13979 0 Clostridium beijerinckii 1520 species 0 Clostridium pasteurianum 1501 species 1 10845 18132 1 1494 species Clostridium cochlearium 0 species 36745 Clostridium saccharoperbutylacetonicum 0 9976 1 9264 1 species 1561 Clostridium baratii 0 4980 1 species 394958 Clostridium taeniosporum 0 29341 species Clostridium argentinense 0 5445 1 18264 1 1502 species 0 Clostridium perfringens 990719 family 8 Christensenellaceae 0 11773 1 3 990721 168 genus 0 Christensenella 11765 1 2 species 1805714 Christensenella massiliensis 0 11597 1 89366 10 no rank 538999 0 0 Intestinimonas 1392389 genus 219 2 29467 1 species 1297617 Intestinimonas butyriciproducens 0 29248 1 1 7573 4 family 9 543314 0 Clostridiales Family XIII. Incertae Sedis 143393 species 0 [Eubacterium] sulci 4882 1 2 2682 1 0 Mogibacterium 86331 6 genus Mogibacterium diversum 0 114527 species 1 2676 1677 1 3 539000 5 family Clostridiales Family XVII. Incertae Sedis 0 73918 genus 8 0 Thermaerobacter 1672 1 2 0 Thermaerobacter marianensis species 73919 1 1664 1 50649 0 genus 2717089 species 2086584 0 Mordavella sp. Marseille-P3756 50649 1 12 1 130022 0 Peptostreptococcaceae family 354 186804 genus 3 1481960 Peptoclostridium 0 1 14281 2 0 Peptoclostridium acidaminophilum species 1731 1 14278 2 9771 1 0 Paeniclostridium 1849828 genus 48 9723 1 1505 species Paeniclostridium sordellii 0 0 Clostridioides 236 genus 1870884 2 1 99039 1496 species 0 Clostridioides difficile 98803 1 0 Acetoanaerobium 11 genus 186831 2 1 3286 3275 1 1511 species 0 Acetoanaerobium sticklandii 1538 1 1411023 no rank 0 Peptostreptococcaceae bacterium oral taxon 929 0 species 2081703 1 1538 0 Filifactor 44259 4 genus 2 1753 1 1749 1 species 143361 0 Filifactor alocis 1 39757 38 91 order 68295 Thermoanaerobacterales 0 368 2 family 227387 0 0 Thermodesulfobium 227388 1 genus 2 368 1 species 184064 0 Thermodesulfobium narugense 367 1 39 family 186814 Thermoanaerobacteraceae 0 1 23420 19 1 1377 0 genus 129957 1377 1 129958 species Carboxydothermus hydrogenoformans 0 0 Caldanaerobacter 249529 genus 10 2 1137 1 1127 1 911092 species Caldanaerobacter subterraneus 0 675 1 2 140458 genus 6 Thermacetogenium 0 1 669 Thermacetogenium phaeum 0 85874 species 1749 4 42857 no rank 0 585 1 2 42837 6 genus Ammonifex 0 0 Ammonifex degensii species 42838 1 579 44260 2 genus Moorella 0 1164 1 2 Moorella thermoacetica 0 species 1525 1 1162 0 Thermoanaerobacter genus 709 1754 9 1 18443 species 496866 Thermoanaerobacter pseudethanolicus 0 2226 1 1 1610 0 Thermoanaerobacter italicus 108150 species 2 4468 0 no rank 2636821 1 1909 0 Thermoanaerobacter sp. X513 573062 species 2559 1 399726 species 0 Thermoanaerobacter sp. X514 1 1744 Thermoanaerobacter wiegelii 0 species 46354 3928 1 2325 species Thermoanaerobacter kivui 0 1532 1 583357 species 0 Thermoanaerobacter mathranii 0 Thermoanaerobacter brockii species 29323 1 2226 14866 1 13 543371 31 family Thermoanaerobacterales Family III. Incertae Sedis 0 1 10326 9 144 genus 44000 Caldicellulosiruptor 0 1265 1 717609 species Caldicellulosiruptor obsidiansis 0 species 413889 Caldicellulosiruptor kronotskyensis 0 995 1 species 413888 0 Caldicellulosiruptor hydrothermalis 1391 1 Caldicellulosiruptor kristjanssonii 0 species 52765 1 1560 896 1 species 31899 0 Caldicellulosiruptor bescii 44001 species Caldicellulosiruptor saccharolyticus 0 1790 1 0 Caldicellulosiruptor owensensis 55205 species 1 1036 0 Caldicellulosiruptor lactoaceticus 52766 species 1 1249 genus 19 28895 0 Thermoanaerobacterium 1 4509 3 2940 1 1517 species Thermoanaerobacterium thermosaccharolyticum 0 species 29329 0 Thermoanaerobacterium xylanolyticum 1550 1 1 1012 3 6 family 543372 Thermoanaerobacterales Family IV. Incertae Sedis 0 252965 7 genus 0 Mahella 1006 1 2 999 1 252966 species 0 Mahella australiensis 4 order 485256 Natranaerobiales 0 1 1257 4 0 Natranaerobiaceae family 4 485255 3 1 1253 1 1249 2 39 genus 375928 0 Natranaerobius 1210 1 375929 species 0 Natranaerobius thermophilus 8 10093 1 0 Halanaerobiales 53433 11 order Halobacteroidaceae 0 53434 19 family 3 4352 1 1 2721 0 42417 genus species 42422 Halobacteroides halobius 0 2721 1 28186 genus 0 1612 1 1 1612 0 Acetohalobium arabaticum 28187 species 1 5730 4 1 family 972 0 Halanaerobiaceae 0 genus 2330 2 5131 species 2331 0 Halanaerobium praevalens 3330 1 1801 1 656519 species 0 Halanaerobium hydrogeniformans 1 598 0 32636 genus 31909 species 0 Halothermothrix orenii 598 1 3230 4 2770089 order 0 1561 2 family 2770093 0 1561 1 2 291988 12 genus Thermosediminibacter 0 0 Thermosediminibacter oceani 291990 species 1 1549 2770092 family 0 1669 2 1 1669 2 3 genus 499228 Tepidanaerobacter 0 1666 1 499229 species Tepidanaerobacter acetatoxydans 0 96243 142 clade 1798711 0 1 96243 142 4 phylum 1117 0 Cyanobacteria 0 no rank 1983111 1 279 species 718217 0 cyanobacterium endosymbiont of Epithemia turgida 279 1 52604 order 2 Pleurocapsales 0 4422 1 7 1890498 family 8 0 Dermocarpellaceae 2835 1 4 0 Stanieria genus 3 102115 3 1 2827 1229 1 102116 species 0 Stanieria cyanosphaera no rank 2642663 0 1595 1 Stanieria sp. NIES-3757 0 1807358 species 1 1595 0 family 1890500 2 1585 2 1585 1 0 Pleurocapsa 44474 1 genus 1584 1 species 54308 0 Pleurocapsa minor 37 21542 0 subclass 1301283 20 1 14519 Chroococcales 0 29 order 1118 1 1225 4 5 family 1890449 Microcystaceae 0 Microcystis 0 1125 genus 7 3 1220 1 Microcystis aeruginosa 0 species 1126 1 775 438 1 no rank 2643300 0 species 1967666 0 Microcystis sp. MC19 438 1 1890450 4 family 0 Aphanothecaceae 6681 1 8 0 2546365 genus 2 1545 0 species 2546366 2 1545 1 826 0 Cyanothece sp. PCC 8801 strain 41431 Cyanothece sp. PCC 8802 0 395962 strain 1 719 0 genus 1453359 1 427 713887 species Candidatus Atelocyanobacterium thalassa 0 427 1 263510 genus 0 1222 1 species 2546360 0 1222 1 1 1222 0 Cyanothece sp. ATCC 51142 strain 43989 28070 genus 0 2675 2 0 species 2546356 1 1887 65393 strain Cyanothece sp. PCC 7424 0 1887 1 788 1 species 2546359 0 788 1 497965 strain 0 Cyanothece sp. PCC 7822 92682 no rank 0 808 1 genus 76023 0 808 1 808 1 2632878 no rank 0 1 808 0 Halothece sp. PCC 7418 65093 species family 8 1890464 0 Chroococcaceae 1 5731 6 0 genus 268175 1 840 840 1 2648896 no rank 0 Chondrocystis sp. NIES-4102 0 species 2005460 1 840 3 3972 1 Geminocystis 0 669357 4 genus 0 2625037 no rank 2 3968 2398 1 1615909 species 0 Geminocystis sp. NIES-3708 1570 1 species 1617448 Geminocystis sp. NIES-3709 0 1 911 0 genus 102231 1 911 0 2623012 no rank 0 Gloeocapsa sp. PCC 7428 1173026 species 1 911 family 1890452 0 853 1 1 853 0 genus 102234 853 1 species 379064 Cyanobacterium aponinum 0 Oscillatoriales 0 1150 order 36 17 7023 1 Microcoleaceae 0 1892252 family 3 4 2249 1 genus 1205 0 954 1 species 1206 0 Trichodesmium erythraeum 954 1 44471 1 genus 0 Microcoleus 1292 1 2 0 2642155 no rank 1 1291 1291 1 1173027 species Microcoleus sp. PCC 7113 0 1892249 family 32 Cyanothecaceae 0 536 1 3 504 1 2 43988 genus 13 0 Cyanothece 0 2649277 no rank 1 491 1 491 0 Cyanothece sp. PCC 7425 395961 species 1892251 family 0 1010 2 1 1010 2 genus 2 63132 Geitlerinema 0 no rank 2648775 0 1008 1 0 Geitlerinema sp. PCC 7407 1173025 species 1 1008 1965 5 1892254 family 0 1 1021 3 genus 3 1158 Oscillatoria 0 118323 species Oscillatoria acuminata 0 584 1 434 1 482564 species 0 Oscillatoria nigro-viridis 0 Moorea 2 genus 1155738 2 1 944 1 942 0 Moorea producens 1155739 species 1892255 5 family Gomontiellaceae 0 1227 1 2 1222 1 genus 241421 0 1222 1 species 241425 Crinalium epipsammum 0 0 Gloeobacteria 307596 7 class 6 1768 1 5 1 1761 Gloeobacterales 0 17 order 307595 4 1 1744 0 Gloeobacteraceae family 24 1890422 0 Gloeobacter 33071 genus 20 3 1720 1 823 1 33072 species Gloeobacter violaceus 0 877 1 species 1416614 Gloeobacter kilaueensis 0 35809 1 55 1890424 order 145 0 Synechococcales 5 1 5204 0 Prochloraceae family 5 1213 1 5199 4 54 genus 1218 0 Prochlorococcus 1 4013 Prochlorococcus marinus 0 species 1219 0 2627481 no rank 2 1132 746 1 1501269 species Prochlorococcus sp. MIT 0801 0 1 386 0 Prochlorococcus sp. MIT 0604 species 1501268 Leptolyngbyaceae 0 1890438 family 18 6 3039 1 47251 genus 7 0 Leptolyngbya 3021 1 5 3 2229 0 2650499 no rank 1168 1 1080068 species Leptolyngbya sp. O-77 0 Leptolyngbya sp. PCC 7376 0 111781 species 1 187 0 Leptolyngbya sp. NIES-3755 1752064 species 1 874 785 1 1184 species Leptolyngbya boryana 0 1 1134 5 19 family 1890428 0 Merismopediaceae 1142 45 genus 0 Synechocystis 1115 1 4 3 1070 0 no rank 2640012 407 1 species 2116702 0 Synechocystis sp. IPPAS B-1465 Synechocystis sp. PCC 6714 0 1147 species 1 256 407 1 species 1148 0 Synechocystis sp. PCC 6803 23612 1 32 1890426 48 family 0 Synechococcaceae 26 1 19538 0 Synechococcus genus 118 1129 0 Synechococcus elongatus species 32046 1 709 3755 1 species 33070 Synechococcus lividus 0 23 14956 0 no rank 2626047 467 1 32049 species 0 Synechococcus sp. PCC 7002 641 1 585423 species Synechococcus sp. KORDI-49 0 386 1 species 585425 Synechococcus sp. KORDI-52 0 1 644 0 Synechococcus sp. WH 8109 166314 species 284 1 species 374982 0 Synechococcus sp. PCC 73109 32051 species Synechococcus sp. WH 7803 0 656 1 397 1 species 1280380 Synechococcus sp. KORDI-100 0 1 399 0 Synechococcus sp. SynAce01 species 1916956 374981 species 0 Synechococcus sp. PCC 7003 289 1 0 Synechococcus sp. JA-2-3B'a(2-13) species 321332 1 904 714 1 species 316279 0 Synechococcus sp. CC9902 species 195498 0 Synechococcus sp. PCC 7117 410 1 1 690 Synechococcus sp. PCC 7502 0 1173263 species 1 802 0 Synechococcus sp. NIES-970 species 1827144 1 399 Synechococcus sp. CC9605 0 species 110662 1 768 Synechococcus sp. CC9311 0 species 64471 1 224 0 Synechococcus sp. PCC 6312 species 195253 333 1 species 195248 Synechococcus sp. PCC 8807 0 0 Synechococcus sp. UTEX 2973 species 1350461 1 541 species 29410 0 Synechococcus sp. WH 8103 907 1 1 1177 0 Synechococcus sp. WH 8102 species 84588 0 Synechococcus sp. RCC307 species 316278 1 672 2252 1 321327 species Synechococcus sp. JA-3-3Ab 0 497 1 genus 13034 0 0 Dactylococcopsis salina 292566 species 1 497 1 324 0 genus 146785 Thermosynechococcus elongatus 0 146786 species 1 324 3 3205 1 Cyanobium 0 167375 genus 27 2627006 no rank 0 1787 1 species 1851505 Cyanobium sp. NIES-981 0 1787 1 species 59930 0 Cyanobium gracile 1391 1 201 2 1890436 family 0 1 genus 1152 0 Pseudanabaena 1 201 2 200 1 no rank 2593292 0 1 200 Pseudanabaena sp. PCC 7367 0 82654 species 0 2303730 family 2 1100 170610 4 genus 0 Halomicronema 1100 1 2 1209493 species 0 Halomicronema hongdechloris 1096 1 1890429 family 0 1374 2 0 Acaryochloris 155977 genus 3 2 1374 1 1 1371 Acaryochloris marina 0 155978 species 0 order 1890505 3 295 3 1 295 0 Chroococcidiopsidaceae 3 family 1890528 Chroococcidiopsis 0 1 genus 54298 2 1 292 1 291 0 Chroococcidiopsis thermalis 54299 species 1161 order 19 0 Nostocales 32124 1 32 1 2166 3 36 family 1185 0 Rivulariaceae 1 2130 2 8 genus 373984 0 Rivularia 0 2676603 no rank 1 2122 2122 1 species 373994 Rivularia sp. PCC 7116 0 904 1 2 1892263 family 1 Hapalosiphonaceae 0 1190 genus 0 903 1 0 494603 no rank 1 903 0 Fischerella sp. NIES-3754 1752063 species 1 903 1 20313 17 family 9 1162 Nostocaceae 0 3572 1 4 1163 94 genus Anabaena 0 1485 1 species 1165 Anabaena cylindrica 0 2619674 no rank 0 1993 2 984 1 46234 species Anabaena sp. 90 0 0 Anabaena sp. WA102 1647413 species 1 1009 10 1 14348 0 Nostoc genus 200 1177 2593658 no rank 0 9376 7 1 1563 Nostoc sp. CENA543 0 1869241 species 563 1 317936 species 0 Nostoc sp. PCC 7107 1751286 species Nostoc sp. NIES-3756 0 1293 1 species 103690 Nostoc sp. PCC 7120 0 1230 1 species 1618022 0 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1181 1 28072 species 0 Nostoc sp. PCC 7524 1121 1 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 1261031 1 2425 1306274 species Nostoc flagelliforme 0 3227 1 1 1545 0 Nostoc punctiforme species 272131 0 264688 genus 2 2384 1 1023 Trichormus azollae 0 species 1164 1 1361 0 Trichormus variabilis 264691 species 0 2661849 family 8 7319 1 7319 8 123 genus 1186 0 Calothrix 1 696 0 Calothrix parietina 32054 species 2619626 no rank 0 6500 6 0 Calothrix sp. NIES-2098 species 1954171 1 1139 99598 species 0 Calothrix sp. PCC 7507 864 1 Calothrix sp. NIES-4101 0 2005461 species 1 1450 0 Calothrix sp. 336/3 species 1337936 1 629 1 1050 0 Calothrix sp. NIES-3974 species 2005462 1368 1 2005469 species 0 Calothrix sp. NIES-4071 0 no rank 1219117 1 1403 species 1940762 0 Nostocales cyanobacterium HT-58-2 1403 1 544448 phylum 5 Tenericutes 0 50903 1 102 0 2799557 no rank 2 1540 2 1540 1 0 Candidatus Izimaplasma 1912503 16 genus 2624196 no rank 0 1524 1 1524 1 1541959 species Candidatus Izimaplasma sp. HR1 0 0 Mollicutes 31969 57 class 97 45280 1 186329 3 order 0 Acholeplasmatales 6107 1 13 2146 10 family 0 Acholeplasmataceae 6104 1 12 1 4722 5 52 genus 2147 Acholeplasma 0 Acholeplasma oculi 0 35623 species 1 1365 Acholeplasma laidlawii 0 species 2148 1 758 0 Acholeplasma palmae 38986 species 1 1378 1 1169 0 Acholeplasma brassicae species 61635 6 1 1372 0 Candidatus Phytoplasma 32 genus 33926 species group 85620 0 454 3 Aster yellows witches'-broom phytoplasma 0 species 229545 1 145 species 100379 Onion yellows phytoplasma 0 129 1 180 1 species 202462 Maize bushy stunt phytoplasma 0 85630 species group 0 287 1 287 1 37692 species Candidatus Phytoplasma mali 0 1 599 0 85632 species group 599 1 species 59748 0 Candidatus Phytoplasma australiense 40 order 186328 0 Entomoplasmatales 1 21521 39 33925 family 40 Entomoplasmataceae 0 7053 1 14 1 4712 8 genus 53 46239 0 Mesoplasma 434 1 species 2149 0 Mesoplasma entomophilum 1 472 0 Mesoplasma syrphidae 225999 species 1 1004 Mesoplasma lactucae 0 species 138853 2151 species Mesoplasma florum 0 1592 1 219745 species 0 Mesoplasma tabanidae 342 1 484 1 324078 species Mesoplasma coleopterae 0 331 1 species 216427 0 Mesoplasma chauliocola 1 2301 5 genus 1 46238 0 Entomoplasma 214888 species 0 Entomoplasma luminosum 949 1 Entomoplasma somnilux 0 species 215578 1 563 1 627 0 Entomoplasma melaleucae species 81459 species 74700 Entomoplasma freundtii 0 161 1 8 family 2131 0 Spiroplasmataceae 1 14428 24 0 Spiroplasma genus 131 2132 23 1 14420 536 1 2137 species Spiroplasma apis 0 1104 1 species 216945 Spiroplasma syrphidicola 0 569 1 species 216933 0 Spiroplasma chrysopicola species 216938 Spiroplasma helicoides 0 1102 1 1 383 Spiroplasma monobiae 0 2136 species 1 344 Spiroplasma litorale 0 species 216942 525 1 species 216934 Spiroplasma corruscae 0 1 432 Spiroplasma citri 0 species 2133 523 1 species 2145 Spiroplasma taiwanense 0 787 1 species 362837 0 Spiroplasma cantharicola 0 Spiroplasma clarkii species 2139 1 773 1 574 0 Spiroplasma eriocheiris 315358 species 574 1 species 216946 Spiroplasma turonicum 0 1 912 0 Spiroplasma atrichopogonis species 1114980 1356 2 2637901 no rank 0 0 Spiroplasma sp. TU-14 1898044 species 1 678 Spiroplasma sp. NBRC 100390 0 species 1914410 1 678 903 1 2144 species 0 Spiroplasma mirum species 216935 0 Spiroplasma culicicola 785 1 1073 1 216937 species Spiroplasma floricola 0 1 361 0 Spiroplasma kunkelii species 47834 1 445 0 Spiroplasma sabaudiense 216944 species 228 1 216936 species Spiroplasma diminutum 0 0 Mycoplasmatales 12 order 2085 44 1 17595 71 family 2092 Mycoplasmataceae 0 1 17583 43 Ureaplasma 0 genus 2 2129 3 1 499 species 2130 0 Ureaplasma urealyticum 181 1 316 1 species 134821 0 Ureaplasma parvum 10706 1 27 2093 71 genus Mycoplasma 0 984991 species 0 Mycoplasma parvum 210 1 1 702 0 Mycoplasma putrefaciens 2123 species 130 1 2111 species Mycoplasma arthritidis 0 50052 species Mycoplasma crocodyli 0 151 1 species 29554 Mycoplasma canadense 0 204 1 2099 species 0 Mycoplasma hyopneumoniae 290 1 Mycoplasma pneumoniae 0 species 2104 1 141 1 113 Mycoplasma ovis 0 species 171632 3 3352 0 species group 656088 1 1470 0 Mycoplasma mycoides species 2102 Mycoplasma capricolum 0 2095 species 1 1233 2105 species 0 Mycoplasma leachii 649 1 Mycoplasma penetrans 0 28227 species 1 419 1 741 Mycoplasma mobile 0 species 2118 157 1 species 2097 0 Mycoplasma genitalium 780 1 species 2096 0 Mycoplasma gallisepticum 0 Mycoplasma dispar 86660 species 1 113 0 Mycoplasma haemofelis species 29501 1 33 Mycoplasma haemocanis 0 136241 species 1 59 682 1 species 2098 0 Mycoplasma hominis 542 1 species 2100 0 Mycoplasma hyorhinis 279 1 species 65123 0 Mycoplasma wenyonii 45362 species 0 Mycoplasma bovoculi 424 1 1 172 Mycoplasma flocculare 0 species 2128 0 Mycoplasma suis 57372 species 1 101 464 1 51365 species 0 Mycoplasma yeatsii 2683645 no rank 0 376 1 1 376 0 Mycoplasma sp. (ex Biomphalaria glabrata) species 1749074 12 6307 0 2767358 genus 2109 species Mycoplasma synoviae 0 497 1 species 2115 0 Mycoplasma fermentans 895 1 701 1 species 28903 Mycoplasma bovis 0 224 1 48003 species 0 Mycoplasma pullorum Mycoplasma canis 0 species 29555 1 391 413 1 2112 species Mycoplasma bovigenitalium 0 441 1 2107 species 0 Mycoplasma pulmonis 354 1 species 2094 0 Mycoplasma arginini 2110 species 0 Mycoplasma agalactiae 591 1 552 1 species 171284 0 Mycoplasma cynos 0 Mycoplasma bovirhinis species 29553 1 1090 1 158 0 Mycoplasma californicum species 2113 4078 2 no rank 713063 0 species 1911683 0 Tenericutes bacterium MZ-XQ 1852 1 2226 1 species 1911684 0 Tenericutes bacterium MO-XQ 3 435 0 67819 phylum 1663419 3 class Fimbriimonadia 0 435 1 3 0 order 1663425 2 432 1 432 2 family 1 1663426 0 Fimbriimonadaceae 1 431 0 1005038 genus Fimbriimonas ginsengisoli 0 species 1005039 1 431 35 22336 0 1297 phylum 22336 1 35 188787 123 class 0 Deinococci 15 1 14013 0 Deinococcales order 143 118964 183710 70 family Deinococcaceae 0 13870 1 14 13 13800 1 0 Deinococcus 1298 213 genus 0 Deinococcus actinosclerus 1768108 species 1 1076 2025 1 502394 species 0 Deinococcus gobiensis species 310783 Deinococcus deserti 0 844 1 2623546 no rank 0 932 1 species 2080419 0 Deinococcus sp. NW-56 932 1 1 765 Deinococcus peraridilitoris 0 432329 species species 1182571 Deinococcus swuensis 0 1558 1 1199 1 species 1299 0 Deinococcus radiodurans 1 760 Deinococcus maricopensis 0 species 309887 1 1221 Deinococcus soli Cha et al. 2016 0 1309411 species 1 842 Deinococcus puniceus 0 species 1182568 1 1446 Deinococcus proteolyticus 0 55148 species species 68909 Deinococcus geothermalis 0 919 1 0 order 2762275 2 605 2 605 0 332247 family 1 605 2 genus 2 332248 0 Truepera 1 603 0 Truepera radiovictrix 332249 species Thermales 0 68933 order 65 17 7595 1 7530 1 16 188786 59 family 0 Thermaceae 186191 8 genus 0 Marinithermus 551 1 2 543 1 186192 species Marinithermus hydrothermalis 0 1885 1 3 65551 genus 19 Meiothermus 0 1 1008 0 Meiothermus ruber 277 species 858 1 52022 species 0 Meiothermus silvanus 3996 1 8 270 129 genus Thermus 0 1 546 0 Thermus aquaticus species 271 1 407 0 Thermus brockianus 56956 species 1 673 Thermus scotoductus 0 37636 species 0 no rank 2619321 1 390 0 Thermus sp. CCB_US3_UF1 species 1111069 1 390 species 56957 Thermus oshimai 0 665 1 456163 species Thermus parvatiensis 0 354 1 0 Thermus thermophilus species 274 1 832 1 1039 2 1 genus 208447 Oceanithermus 0 1 1038 0 Oceanithermus profundus species 187137 0 68297 phylum 4 2657 0 203486 class 4 2657 2657 1 4 203487 order 11 0 Dictyoglomales 0 family 203488 3 2646 1 genus 13 Dictyoglomus 0 1 2646 3 species 513050 Dictyoglomus turgidum 0 1542 1 1 1103 0 Dictyoglomus thermophilum species 14