members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 35600 30 18251864 4622 0 1 0 name 0 2 1 superkingdom 57 4334 18170210 Bacteria 10 3322 phylum 0 508458 3322 10 Synergistia 0 649775 1 class 22 649776 0 54 order 1 9 3300 Synergistales 8 3246 Synergistaceae 0 649777 1 family 97 1 125 genus 49894 0 Acetomicrobium mobile 125 1 species 97477 0 2140 1 genus 0 508459 1 2140 Cloacibacillus porcorum 1197717 0 species 81461 0 genus 1 3 334 2 Thermanaerovibrio 81462 0 species 331 1 Thermanaerovibrio acidaminovorans 3 1 genus 0 81466 Aminobacterium 275 2 81468 0 species 272 1 Aminobacterium colombiense genus 336260 0 1 275 275 1 Thermovirga lienii 336261 0 species phylum 0 2138240 370 2 2138243 0 1 class 1 2 370 Coprothermobacteria order 0 2138246 369 1 family 2138247 0 1 369 genus 0 68335 369 1 species 35786 0 Coprothermobacter proteolyticus 1 369 68297 0 phylum 3 911 class 203486 0 3 911 Dictyoglomales 3 911 order 1 2 203487 0 2 909 0 203488 family 2 909 13 0 genus 427 1 Dictyoglomus turgidum 0 513050 species 0 14 species 482 1 Dictyoglomus thermophilum clade 2498710 0 1 92 1 92 67814 0 phylum class 0 693071 92 1 1 92 order 693072 0 1 92 0 693073 family 92 1 0 693074 genus Caldisericum exile 1 92 species 693075 0 2 404 no rank 2323 0 404 2 clade 1783234 0 1 103 phylum 0 95818 103 1 0 1895827 no rank species 2056494 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 103 1 301 1 clade 0 95901 class 2497643 0 301 1 0 2497644 order 301 1 301 1 family 2497645 0 0 1551504 genus 301 1 Candidatus Babela massiliensis 1 301 species 673862 0 4335 13 phylum 40117 0 203693 0 31 class 1 4335 13 Nitrospira 0 189778 1 order 14 12 4304 Nitrospirales 1 family 16 0 189779 Nitrospiraceae 11 4290 genus 1 1 179 0 Leptospirillum 4 645 183 1 species group 261386 0 183 1 Leptospirillum ferriphilum 178606 0 species species group 0 655606 204 1 Leptospirillum ferrooxidans 1 204 species 180 0 257 1 0 261385 species group 1660083 0 species 257 1 Leptospirillum sp. Group II 'CF-1' genus 28261 0 463 1 species 0 28262 Thermodesulfovibrio yellowstonii 1 463 Nitrospira 3166 5 24 genus 1 1234 0 330214 0 species 1 762 Nitrospira defluvii species 0 42253 Nitrospira moscoviensis 885 1 0 1325564 species 1 646 Nitrospira japonica Candidatus Nitrospira inopinata 849 1 species 1715989 0 clade 0 1783257 37001 84 Verrucomicrobia 14771 24 1 phylum 11 0 74201 0 417295 no rank 3376 2 0 1637999 species 1502 1 Verrucomicrobia bacterium IMCC26134 Verrucomicrobia bacterium 1874 1 species 2026799 0 3 262 0 1955630 class order 1 2 717963 0 Methylacidiphilales 3 262 260 2 family 0 717964 0 511745 genus 260 2 136 1 Methylacidiphilum infernorum 511746 0 species 591154 0 species 124 1 Methylacidiphilum fumariolicum 3949 6 Verrucomicrobiae 203494 0 class 1 8 48461 0 order 1 19 5 3941 Verrucomicrobiales Akkermansiaceae 3922 4 family 1 25 1647988 0 12 genus 1 239934 0 Akkermansia 3 3897 0 239935 species 2819 1 Akkermansia muciniphila 1066 1 Akkermansia glycaniphila 0 1679444 species Opitutae 11 7014 39 class 1 414999 0 Opitutales 6 5799 67 1 order 0 415000 1 family 45 0 134623 Opitutaceae 5732 5 26 1 genus 0 1961799 Lacunisphaera 2644 2 Lacunisphaera limnophila 1 2618 species 0 1838286 1 826 178440 0 genus 1 826 Opitutus terrae 0 107709 species 2217 1 0 278955 no rank 2217 1 Opitutaceae bacterium TAV5 0 794903 species 415001 0 2 order 1 1176 4 Puniceicoccales Puniceicoccaceae 1174 3 2 1 family 0 415002 1172 2 Coraliomargarita 0 442430 3 1 genus 395922 0 species 1 1169 Coraliomargarita akajimensis 159 1 0 134549 class 159 1 0 134550 genus 1 159 no rank 0 2648876 0 1704307 species 159 1 Candidatus Xiphinematobacter sp. Idaho Grape 256845 0 phylum 5514 3 5514 3 Lentisphaeria 1313211 0 25 class 1 order 1 1264 278082 0 Victivallales 2 5489 1 4225 no rank 1674876 0 species 0 2094242 Victivallales bacterium CCUG 44730 1 4225 35 14249 0 203682 phylum Phycisphaerae 2289 7 class 1 15 666505 0 1039 2 order 2483366 0 family 0 2483367 1039 2 genus 0 2483368 1039 2 species 0 1940790 Phycisphaerae bacterium L21-RPul-D3 1 744 1941349 0 species 295 1 Phycisphaerae bacterium ST-PulAB-D4 11 order 1 666506 0 Phycisphaerales 4 1235 8 1 family 0 666507 Phycisphaeraceae 1224 3 2 genus 1 666508 0 Phycisphaera 1216 2 Phycisphaera mikurensis 1214 1 species 0 547188 1427 3 2517206 0 class 1427 3 Candidatus Brocadiales 1127829 0 4 order 1 1127830 0 family 1 47 1423 2 Candidatus Brocadiaceae genus 380738 0 1 1376 species 174633 0 Candidatus Kuenenia stuttgartiensis 1 1376 10533 25 Planctomycetia 203683 0 class 1 106 order 2691355 0 2 519 519 2 family 0 1914233 1 genus 2 0 113 Gemmata 2 519 1 517 0 2622970 no rank Gemmata sp. SH-PL17 517 1 species 1630693 0 Planctomycetales 11 4284 155 1 order 0 112 Planctomycetaceae 10 4129 50 1 family 0 126 1936111 0 genus 1 1 953 2 Fuerstia 1891926 0 species 952 1 Fuerstia marisgermanicae 0 1649490 1 genus 3 2 333 Rubinisphaera 1 330 Rubinisphaera brasiliensis 119 0 species 2526 3 Planctomyces 0 118 16 1 genus 0 2648843 no rank 2510 2 Planctomyces sp. SH-PL14 1 937 species 1632864 0 Planctomyces sp. SH-PL62 1573 1 species 1636152 0 267 2 Planctopirus 0 1649480 1 1 genus 120 0 species 1 266 Planctopirus limnophila 0 2691354 order 1859 4 family 0 2691358 1217 1 genus 0 1676125 1217 1 species 0 1331910 Thermogutta terrifontis 1 1217 642 3 2691357 0 family Pirellula 2 220 14 1 genus 0 123 0 125 species 206 1 Pirellula staleyi 422 1 genus 265488 0 1 422 Rhodopirellula baltica 265606 0 species order 2691356 0 7 3765 1763524 0 family 1 12 7 3765 Isosphaeraceae 2 832 Isosphaera 127 0 genus 1 1 species 0 128 Isosphaera pallida 1 831 1763521 0 genus 1 4 1273 2 Paludisphaera 1269 1 Paludisphaera borealis 1387353 0 species 0 466152 1 genus 12 1648 2 Singulisphaera species 0 466153 Singulisphaera acidiphila 1 1636 0 204428 phylum 1824 17 17 1824 Chlamydiia 204429 0 3 class 1 order 0 51291 12 1363 1363 12 0 809 family 0 1113537 no rank 12 1363 810 0 genus 1 1 1363 12 Chlamydia species 0 83559 Chlamydia suis 91 1 species 0 83560 Chlamydia muridarum 47 1 species 0 83554 Chlamydia psittaci 1 48 Chlamydia avium 68 1 species 1457141 0 1 40 Chlamydia pneumoniae 0 83558 species species 0 83556 Chlamydia felis 1 592 Chlamydia gallinacea 1 280 species 1457153 0 56 1 Chlamydia caviae 83557 0 species 83555 0 species 49 1 Chlamydia abortus Chlamydia trachomatis 1 21 species 0 813 1 70 Chlamydia pecorum 85991 0 species 0 1963360 order 458 4 2 239 family 0 92713 282132 0 genus 118 1 0 389348 species 1 118 Candidatus Protochlamydia naegleriophila 0 83551 genus 1 121 Parachlamydia acanthamoebae 121 1 species 83552 0 0 92712 family 57 1 34093 0 genus 1 57 0 83561 species 57 1 Simkania negevensis family 92714 0 162 1 genus 71666 0 162 1 Waddlia chondrophila 1 162 species 0 71667 phylum 134625 0 5 643 643 5 Kiritimatiellae 0 1921781 1 class 11 Kiritimatiellales 632 4 order 1 7 1921782 0 Kiritimatiellaceae 625 3 family 1 2 1921783 0 0 1921784 18 1 genus 623 2 Kiritimatiella 1307763 0 species 605 1 Kiritimatiella glycovorans 2 phylum 1 74152 0 Elusimicrobia 7 919 3 431 class 447830 0 431 3 Endomicrobiales 0 1783344 1 order 1 2 430 1783343 0 family genus 1408194 0 430 2 1 100 Candidatus Endomicrobium trichonymphae 1408204 0 species Endomicrobium proavitum 330 1 species 1408281 0 641853 0 class 385 2 0 641854 order 385 2 family 0 641876 2 385 385 2 Elusimicrobium 423604 0 genus 1 3 382 1 Elusimicrobium minutum 423605 0 species 101 1 no rank 99260 0 species 167965 0 uncultured Termite group 1 bacterium 101 1 3285 22 200783 0 phylum 1 class 3 0 187857 Aquificae 3285 22 1 order 1 0 32069 Aquificales 17 2394 3 1 family 0 64898 Aquificaceae 11 1282 75 1 genus 0 939 1 75 Hydrogenobacter thermophilus 0 940 species 2 245 genus 0 75905 species 0 75906 Thermocrinis ruber 1 209 Thermocrinis albus 1 36 species 0 136094 413 1 genus 0 2713 1 413 Aquifex aeolicus 63363 0 species 6 546 Hydrogenobaculum 0 168657 5 1 genus 5 541 no rank 0 2622382 Hydrogenobaculum sp. SN 110 1 species 0 547146 110 1 Hydrogenobaculum sp. SHO 0 547145 species Hydrogenobaculum sp. HO 110 1 species 547144 0 Hydrogenobaculum sp. Y04AAS1 101 1 species 0 380749 1 110 Hydrogenobaculum sp. 3684 0 547143 species 892 4 Hydrogenothermaceae 224027 0 12 family 1 genus 182899 0 1 416 416 1 Persephonella marina 309805 0 species genus 212790 0 2 464 Sulfurihydrogenibium azorense 1 259 species 309806 0 1 205 no rank 0 2619248 0 436114 species 1 205 Sulfurihydrogenibium sp. YO3AOP1 no rank 90150 0 219 1 1 219 0 412592 genus 219 1 Thermosulfidibacter takaii 0 412593 species Desulfurobacteriales 4 888 1 order 1 1485951 0 3 887 Desulfurobacteriaceae 558314 0 family 1 1 614 1 0 64159 genus 64160 0 species 614 1 Desulfurobacterium thermolithotrophum 1 272 genus 171868 0 species 228745 0 Thermovibrio ammonificans 272 1 phylum 0 1930617 3 392 392 3 1962850 0 class Calditrichales 3 392 3 1 order 0 1962852 1962854 0 1 family 1 2 389 Calditrichaceae 187144 0 genus 388 1 0 187145 species 388 1 Caldithrix abyssi 0 200938 phylum 1247 5 1247 5 Chrysiogenetes 0 118001 1 class 5 order 1 15 189769 0 Chrysiogenales 4 1242 Chrysiogenaceae 3 1227 1 family 14 0 189770 Desulfurispirillum 2 1213 genus 1 25 393029 0 936456 0 species 1 1188 Desulfurispirillum indicum 10628908 358 clade 0 1783270 344 10621505 clade 68336 0 phylum 1 64 976 0 Bacteroidetes 10607016 315 class 1 22 117747 0 Sphingobacteriia 40577 24 Sphingobacteriales 40555 23 7 1 order 0 200666 22 1 family 0 84566 Sphingobacteriaceae 22 40548 84567 0 12 genus 1 6 14233 Pedobacter no rank 2628915 0 1 3306 Pedobacter sp. PACM 27299 1 3306 species 0 1727164 1 1682 Pedobacter heparinus 0 984 species species 188932 0 Pedobacter cryoconitis 1 2793 0 430522 species 1 4121 Pedobacter steynii 1 2319 Pedobacter ginsengisoli 0 363852 species Solitalea 2 2735 6 1 genus 0 929509 1 2729 Solitalea canadensis 995 0 species 28453 0 genus 1 8 6 13617 Sphingobacterium 2609468 0 no rank 11062 4 Sphingobacterium sp. B29 4274 1 species 0 1933220 743722 0 species 1977 1 Sphingobacterium sp. 21 1 3107 Sphingobacterium sp. G1-14 0 2003121 species 0 1538644 species 1 1704 Sphingobacterium sp. ML3W 0 1010 species 2547 1 Sphingobacterium mizutaii 1 2503 no rank 84568 0 species 1986952 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 2503 4 5361 Mucilaginibacter 0 423349 5 1 genus Mucilaginibacter gotjawali 1706 1 species 0 1550579 2617802 0 no rank 1700 1 species 1300914 0 Mucilaginibacter sp. PAMC 26640 1700 1 species 1234841 0 Mucilaginibacter sp. BJC16-A31 1950 1 0 1649482 1 1 genus 2 2077 Pseudopedobacter species 151895 0 Pseudopedobacter saltans 1 2076 179 class 1 200643 0 Bacteroidia 68 10208960 1 order 2345 0 171549 Bacteroidales 58 10198748 Porphyromonadaceae 4 23377 34 1 family 0 171551 Porphyromonas 23343 3 19 1 genus 0 836 Porphyromonas gingivalis 1 15101 species 837 0 species 0 28123 Porphyromonas asaccharolytica 1 8223 171550 0 family 1 9 5 89687 Rikenellaceae 239759 0 genus 1 38 2 85662 Alistipes species 0 214856 Alistipes finegoldii 85624 1 Mucinivorans 4016 2 genus 1 9 1611681 0 1 4007 Mucinivorans hirudinis 1433126 0 species Prevotellaceae 1738047 11 family 1 206 171552 0 1737841 10 Prevotella 0 838 3434 1 genus 839 0 species 1 259243 Prevotella ruminicola Prevotella fusca 241463 1 species 0 589436 1 228481 Prevotella jejuni 0 1177574 species 1 328125 Prevotella intermedia 28131 0 species 48284 1 no rank 0 2638335 652716 0 species 1 48284 Prevotella sp. oral taxon 299 1 283307 Prevotella melaninogenica 0 28132 species species 52227 0 Prevotella dentalis 125044 1 28129 0 species 138920 1 Prevotella denticola Prevotella enoeca 1 81540 species 0 76123 2005525 0 106 family 1 7 910380 Tannerellaceae 0 195950 35 1 genus 3 53169 Tannerella 1 10963 0 2620507 no rank 712710 0 species 1 10963 Tannerella sp. oral taxon HOT-286 1 42171 Tannerella forsythia 28112 0 species Parabacteroides 857105 3 1 genus 68 0 375288 species 0 823 Parabacteroides distasonis 352626 1 504411 1 no rank 2649774 0 504411 1 Parabacteroides sp. CT06 2025876 0 species 1 1654 no rank 0 185291 Bacteroidales bacterium CF 1654 1 species 0 1400053 family 0 2005519 136482 2 Barnesiella 2 136482 52 genus 1 397864 0 397865 0 species 136430 1 Barnesiella viscericola no rank 0 333046 5 5677113 3 5675940 0 909656 genus species 376805 0 Bacteroides salanitronis 1 118681 4659924 1 Bacteroides vulgatus 821 0 species 0 357276 species 1 897335 Bacteroides dorei 2 1173 Candidatus Azobacteroides 511434 0 1 genus 1 1172 1 Candidatus Azobacteroides pseudotrichonymphae 0 511435 species Bacteroidaceae 1461556 11 103 1 family 0 815 Bacteroides 10 1461453 63274 genus 1 816 0 1 126880 Bacteroides cellulosilyticus 0 246787 species Bacteroides caccae 89945 1 species 0 47678 0 818 species 1 287684 Bacteroides thetaiotaomicron Bacteroides heparinolyticus 45263 1 species 0 28113 species 0 290053 Bacteroides helcogenes 1 61057 1796613 0 species 1 159776 Bacteroides caecimuris 69537 1 Bacteroides zoogleoformans 0 28119 species species 0 817 Bacteroides fragilis 1 383025 1 175012 Bacteroides ovatus 0 28116 species 10213 3 Paludibacteraceae 2005523 0 3 family 1 1 1 genus 0 346096 Paludibacter 10210 2 0 185300 species 10209 1 Paludibacter propionicigenes 2 120834 0 1853231 family genus 1 13 283168 0 Odoribacter 2 120834 0 28118 species 1 120821 Odoribacter splanchnicus 0 2005520 2 1 family 6 27060 Dysgonamonadaceae Proteiniphilum 2 11637 11 genus 1 294702 0 species 1642647 0 Proteiniphilum saccharofermentans 11626 1 49 1 genus 0 307628 Petrimonas 8229 2 8180 1 Petrimonas mucosa 1642646 0 species genus 0 1784836 7192 1 Fermentimonas caenicola 7192 1 species 0 1562970 Marinilabiliales 9 10033 1 order 10 0 1970189 2 997 Salinivirgaceae 0 1970190 1 family 1 1970191 0 genus 1 996 996 1 Salinivirga cyanobacteriivorans 1307839 0 species 1 family 15 0 1573805 Marinifilaceae 2 3087 1 3072 0 2060722 genus 1 3072 Marinifilaceae bacterium SPP2 1717717 0 species 1 2252 family 0 558415 1 2252 1193324 0 genus Alkalitalea saponilacus 1 2252 species 889453 0 3 3687 Prolixibacteraceae 0 1471398 23 1 family 2 3664 Draconibacterium 1471399 0 genus 1 44 Draconibacterium orientale 3620 1 species 1168034 0 0 768503 1 class 178 91500 54 Cytophagia 0 768507 1 order 247 91322 53 Cytophagales 0 1937968 1 1 family 2 1110 Bernardetiaceae 1109 1 genus 0 1937972 species 999 0 Bernardetia litoralis 1 1109 2 1589 family 2762301 0 Marivirga 1589 2 58 1 genus 0 869806 1531 1 Marivirga tractuosa 1006 0 species Flammeovirgaceae 8423 4 5 1 family 0 200667 340671 0 no rank 3589 1 Flammeovirgaceae bacterium 311 1 3589 species 1257021 0 Flammeovirga 4829 2 3 genus 1 59739 0 4826 1 no rank 2637820 0 0 1191459 species 4826 1 Flammeovirga sp. MY04 2 4208 family 1853234 0 0 59740 14 1 genus 4208 2 Persicobacter 4194 1 no rank 0 2664020 0 1085624 species 1 4194 Persicobacter sp. JZB09 Hymenobacteraceae 42324 16 59 1 family 0 1853232 8681 4 Rufibacter 0 1379908 68 1 genus 5341 2 2639626 0 no rank 0 1379909 species 3392 1 Rufibacter sp. DG15C Rufibacter sp. DG31D 1 1949 species 0 1379910 species 512763 0 Rufibacter tibetensis 3272 1 22427 8 Hymenobacter 0 89966 1 genus 131 species 1411621 0 Hymenobacter sedentarius 3746 1 3143 1 Hymenobacter swuensis 0 1446467 species no rank 0 2615202 15407 5 Hymenobacter sp. DG25B 1 2555 species 1385664 0 species 1484118 0 Hymenobacter sp. PAMC 26628 1 3507 species 0 1484116 Hymenobacter sp. PAMC 26554 1 3668 2123 1 Hymenobacter sp. DG25A 0 1385663 species species 1356852 0 Hymenobacter sp. APR13 1 3554 18 genus 1 323449 0 Pontibacter 11157 3 0 400092 species 6619 1 Pontibacter korlensis 0 388950 species 4520 1 Pontibacter akesuensis 24985 16 Cytophagaceae 89373 0 17 family 1 0 105 1 genus 5 1531 2 Runella Runella slithyformis 1526 1 species 0 106 Dyadobacter 3859 2 genus 1 1 120831 0 Dyadobacter fermentans 1 3858 species 0 94254 3889 1 0 861914 genus 3889 1 0 2620963 no rank species 1834519 0 Fibrella sp. ES10-3-2-2 1 3889 1 1 genus 0 319458 Leadbetterella 2 3339 1 3338 Leadbetterella byssophila 316068 0 species 107 0 52 genus 1 9690 6 Spirosoma 1 2921 Spirosoma montaniterrae 0 1178516 species 1379870 0 species 1 1190 Spirosoma radiotolerans 0 2057025 species 1 3033 Spirosoma sp. HA7 species 0 1211326 Spirosoma aerolatum 1314 1 species 0 564064 Spirosoma rigui 1180 1 0 978 4 1 genus 2660 2 Cytophaga Cytophaga hutchinsonii 1 2656 species 0 985 808 2 0 1501348 family 273135 0 genus 1 732 0 2641185 no rank 732 1 species 0 249402 Cardinium endosymbiont of Encarsia pergandiella 1 732 281119 0 genus 76 1 species 0 281120 Candidatus Amoebophilus asiaticus 76 1 family 1 64 563798 0 Cyclobacteriaceae 8 7628 Algoriphagus 1809 2 1 genus 1 0 246875 1727163 0 species 1 1808 Algoriphagus sp. M8-2 1455 1 232244 0 genus 0 232259 species 1 1455 Belliella baltica 1 genus 5 0 68288 Cyclobacterium 3 1967 species 0 104 Cyclobacterium marinum 1 461 0 320787 species 1 1501 Cyclobacterium amurskyense 1 2333 390846 0 genus 0 390884 species 2333 1 Echinicola vietnamensis 3155 7 Saprospiria 0 1937959 1 class 3 Saprospirales 3152 6 14 1 order 0 1936988 family 89374 0 1255 2 4 genus 1 1007 0 Saprospira 1255 2 species 0 1008 Saprospira grandis 1251 1 3 1883 Haliscomenobacteraceae 1937961 0 3 family 1 2 1880 Haliscomenobacter 0 2349 1 1 genus Haliscomenobacter hydrossis 1 1879 species 2350 0 Flavobacteriia 139 237534 57 class 1 117743 0 Flavobacteriales 138 237477 223 1 order 0 200644 2507 3 Crocinitomicaceae 0 1853230 4 1 family 2503 2 Fluviicola 332102 0 genus 1 9 Fluviicola taffensis 2494 1 species 0 191579 family 1755828 0 1 91 genus 1755829 0 91 1 0 242600 species 1 91 Ichthyobacterium seriolicida family 1333713 0 2 946 5 1 genus 0 267986 Owenweeksia 946 2 941 1 Owenweeksia hongkongensis 0 253245 species 313602 0 no rank 206 2 162 1 0 336809 genus 162 1 Candidatus Sulcia muelleri 336810 0 species 1 44 0 1940138 genus 1415657 0 species 44 1 Candidatus Walczuchella monophlebidarum 73406 21 family 0 2762318 0 28250 71 1 genus 15950 2 Ornithobacterium Ornithobacterium rhinotracheale 15879 1 species 0 28251 39616 10 no rank 0 2782232 9 36576 Chryseobacterium 59732 0 40 genus 1 species 1265445 0 Chryseobacterium camelliae 1 2454 species 0 1685010 Chryseobacterium glaciei 1192 1 Chryseobacterium gallinarum 1 21479 species 0 1324352 3 5776 0 2593645 no rank Chryseobacterium sp. IHB B 17019 1 1235 species 1721091 0 species 2015076 0 Chryseobacterium sp. T16E-39 1 2150 1 2391 Chryseobacterium sp. StRB126 0 878220 species 4049 1 Chryseobacterium indologenes 253 0 species Chryseobacterium piperi 1586 1 species 0 558152 genus 2782228 0 1 3040 3040 1 Chryseobacterium taklimakanense 536441 0 species 1312 1 genus 0 1013 Weeksella virosa 1312 1 species 0 1014 11 1 genus 0 34084 Riemerella 2 4114 Riemerella anatipestifer 1 4103 species 0 34085 Elizabethkingia 12414 6 1 genus 24 0 308865 1768 1 Elizabethkingia meningoseptica 238 0 species 1 1221 Elizabethkingia genomosp. 3 1756149 0 species 5475 1 Elizabethkingia anophelis 0 1117645 species 1089 1 Elizabethkingia genomosp. 4 0 1756150 species Elizabethkingia miricola 1 2837 species 0 172045 10 1353 Blattabacteriaceae 0 39782 2 1 family 1 genus 15 0 34098 Blattabacterium 1351 9 0 164514 species 1 65 Blattabacterium punctulatus 6 1102 no rank 2647581 0 0 39768 species 1 42 Blattabacterium sp. (Mastotermes darwiniensis) species 0 1316444 Blattabacterium sp. (Nauphoeta cinerea) 1 254 species 0 367806 Blattabacterium sp. (Blatta orientalis) 1 95 338 1 Blattabacterium sp. (Blattella germanica) 624186 0 species 332 1 Blattabacterium sp. (Blaberus giganteus) 1186051 0 species 0 367488 species 1 41 Blattabacterium sp. (Periplaneta americana) Blattabacterium cuenoti 1 169 species 1653831 0 Flavobacteriaceae 97 158744 family 1 2326 49546 0 11684 5 Gramella 0 292691 1 genus 2 species 1486245 0 Gramella flava 1 2897 species 2126553 0 Gramella sp. SH35 2644 1 species 0 1913577 Gramella sp. LPB0144 2099 1 4042 1 Gramella forsetii 411153 0 species 1641 3 genus 291183 0 2 939 no rank 0 2647285 1 523 Lacinutrix sp. Bg11-31 2057808 0 species 1 416 Lacinutrix sp. 5H-3-7-4 983544 0 species Lacinutrix venerupis 1 702 species 1486034 0 genus 0 111500 2 2109 Muricauda ruestringensis 1 1228 species 0 111501 Muricauda lutaonensis 1 881 species 0 516051 genus 1176327 0 404 1 404 1 0 2636237 no rank 2094025 0 species 404 1 Aureitalea sp. RR4-38 Formosa 2042 3 1 genus 55 0 225842 2 1987 no rank 0 2644710 0 1336795 species 1 1112 Formosa sp. Hel3_A1_48 1 875 Formosa sp. Hel1_33_131 0 1336794 species 1 1060 genus 261827 0 species 0 1736674 Algibacter alginicilyticus 1060 1 1 genus 275 0 1016 Capnocytophaga 15 53973 species 1018 0 Capnocytophaga ochracea 2948 1 1 5929 Capnocytophaga leadbetteri 327575 0 species 6 15609 no rank 2640652 0 0 1316596 species 4179 1 Capnocytophaga sp. oral taxon 878 Capnocytophaga sp. H2931 1819 1 species 0 1945657 Capnocytophaga sp. ChDC OS43 1 2741 species 209053 0 1945658 0 species 1563 1 Capnocytophaga sp. H4358 Capnocytophaga sp. oral taxon 864 2941 1 species 0 1316593 Capnocytophaga sp. oral taxon 323 2366 1 species 0 1705617 0 1019 species 1 4300 Capnocytophaga sputigena Capnocytophaga haemolytica 3013 1 species 0 45243 Capnocytophaga canimorsus 1 2998 species 0 28188 Capnocytophaga stomatis 1 3340 species 1848904 0 Capnocytophaga cynodegmi 1559 1 species 0 28189 species 0 1017 Capnocytophaga gingivalis 1 14002 genus 393005 0 1 1728 1728 1 Tamlana sp. UJ94 0 2069432 species 4 4093 Cellulophaga 0 104264 3 1 genus species 76594 0 Cellulophaga baltica 1517 1 Cellulophaga algicola 1 1015 species 59600 0 species 979 0 Cellulophaga lytica 1558 1 52959 0 105 genus 1 4515 6 Polaribacter 1 640 Polaribacter reichenbachii 996801 0 species Polaribacter vadi 1 1228 species 0 1774273 2542 3 0 196858 no rank Polaribacter sp. MED152 1415 1 species 0 313598 Polaribacter sp. ALD11 1 625 species 0 2058137 502 1 Polaribacter sp. BM10 1529069 0 species genus 1 89 76831 0 Myroides 13478 5 Myroides profundi 2251 1 species 0 480520 2 6802 0 2642485 no rank species 1458492 0 Myroides sp. ZB35 4182 1 1 2620 Myroides sp. A21 1583100 0 species Myroides odoratimimus 1 4336 species 0 76832 0 216431 genus 735 1 Croceibacter atlanticus 735 1 species 0 313588 Maribacter 6280 5 1 genus 1 252356 0 1178778 0 species 1097 1 Maribacter cobaltidurans 0 2615042 no rank 3 5182 species 1836467 0 Maribacter sp. T28 1 929 1 2935 Maribacter sp. 1_2014MBL_MicDiv 1644130 0 species species 313603 0 Maribacter sp. HTCC2170 1 1318 1 1510 1518147 0 genus Wenyingzhuangia fucanilytica 1 1510 species 0 1790137 670 1 178469 0 genus 670 1 Arenibacter algicola 0 616991 species 1 1238 genus 1204360 0 species 762954 0 Siansivirga zeaxanthinifaciens 1 1238 genus 336276 0 625 1 0 2615019 no rank 1 625 species 0 2058135 Olleya sp. Bg11-27 1 625 417127 0 4 genus 1 2 2473 Zunongwangia Zunongwangia profunda 1 2469 species 398743 0 2552 2 0 61432 no rank species 0 531844 Flavobacteriaceae bacterium 3519-10 1 1462 1090 1 Flavobacteriaceae bacterium UJ101 0 1150389 species Zobellia 2 2646 4 genus 1 112040 0 2642 1 Zobellia galactanivorans 0 63186 species 143222 0 4 genus 1 1649 2 Salegentibacter no rank 2633436 0 1645 1 1729720 0 species 1645 1 Salegentibacter sp. T436 genus 1 7 104267 0 Tenacibaculum 5 4543 species 1850252 0 Tenacibaculum todarodis 1 1099 0 669041 species 1 1184 Tenacibaculum dicentrarchi 584609 0 species 1 1342 Tenacibaculum jejuense species 107401 0 Tenacibaculum maritimum 1 911 0 326319 genus 3 2840 Dokdonia donghaensis 1825 1 species 326320 0 2615033 0 no rank 1015 2 983548 0 species 734 1 Dokdonia sp. 4H-3-7-5 281 1 Dokdonia sp. MED134 313590 0 species 0 237 210 1 genus 9 14272 Flavobacterium Flavobacterium psychrophilum 1 1774 species 0 96345 1 1435 Flavobacterium crassostreae 1763534 0 species 3726 1 Flavobacterium johnsoniae 986 0 species species 996 0 Flavobacterium columnare 2154 1 species 55197 0 Flavobacterium branchiophilum 1 1117 Flavobacterium gilvum 977 1 species 1492737 0 Flavobacterium commune 2098 1 species 1306519 0 species 312277 0 Flavobacterium indicum 1 781 1144 1 0 83612 genus species 57029 0 Psychroflexus torquis 1 1144 1649495 0 genus 1 1445 1 1445 no rank 2622645 0 1 1445 Seonamhaeicola sp. S2-3 0 1936081 species 0 363408 1 genus 52 5 5151 Nonlabens species 0 319236 Nonlabens sediminis 1597 1 no rank 0 2615035 2539 2 Nonlabens sp. MB-3u-79 776 1 species 0 2058134 species 0 1476901 Nonlabens sp. MIC269 1763 1 328515 0 species 1 963 Nonlabens dokdonensis 1 1221 0 2700084 genus Lutibacter sp. LPB0138 1221 1 species 1850246 0 genus 0 252306 2862 1 252307 0 species 1 2862 Robiginitalea biformata 1209327 0 genus 1 882 1803846 0 species 882 1 Flavivirga eckloniae genus 153265 0 1 1006 101385 0 species 1 1006 Aequorivita sublithincola 389486 0 genus 1 1725 1725 1 2648869 0 no rank 1725 1 Sediminicola sp. YIK13 1453352 0 species 286104 0 genus 2 1456 no rank 2615021 0 2 1456 Winogradskyella sp. PG-2 518 1 species 0 754409 0 1936080 species 1 938 Winogradskyella sp. J14-2 0 358023 genus 1 766 1622118 0 species 766 1 Lutibacter profundi family 246874 0 Cryomorphaceae 1 1 Bacteroidetes Order II. Incertae sedis 6 5125 102 1 order 0 1100069 Rhodothermaceae 5 5023 family 1 39 563843 0 no rank 0 1196022 1 2611 Rhodothermaceae bacterium RA 1 2611 species 1779382 0 genus 1 24 29548 0 Rhodothermus 1622 2 species 0 29549 Rhodothermus marinus 1598 1 1 751 146918 0 genus Salinibacter ruber 751 1 species 0 146919 0 1853228 1 class 6 16 20101 Chitinophagia order 1 54 1853229 0 Chitinophagales 20095 15 1 family 198 0 563835 Chitinophagaceae 14 20041 379899 0 genus 1 49 3715 3 Niabella species 0 446683 Niabella soli 2153 1 Niabella ginsenosidivorans 1513 1 species 1176587 0 6257 3 Chitinophaga 79328 0 genus 1 3 2381 1 Chitinophagaceae bacterium 13 2029983 0 species species 79329 0 Chitinophaga pinensis 1 3873 genus 1 4 354354 0 Niastella 2 2679 0 354356 species 1 2675 Niastella koreensis Flavisolibacter 1621 2 38 1 genus 0 398041 1492898 0 species 1583 1 Flavisolibacter tropicus genus 1769012 0 1 2365 1 2365 2636138 0 no rank 1 2365 Arachidicoccus sp. BS20 0 1850526 species 3206 2 Filimonas 0 649460 1 genus 1 3205 1 Filimonas lacunae 477680 0 species 1134404 0 phylum 1601 7 1 class 4 0 795747 Ignavibacteria 1601 7 1597 6 Ignavibacteriales 0 795748 58 1 order 3 1093 Melioribacteraceae 1334117 0 3 family 1 0 1134403 23 1 genus 2 1090 Melioribacter 0 1134405 species 1 1067 Melioribacter roseus family 795749 0 446 2 Ignavibacterium 446 2 3 genus 1 795750 0 species 591197 0 Ignavibacterium album 443 1 1090 0 phylum 12888 22 191410 0 class 1 84 22 12888 Chlorobia 12804 21 Chlorobiales 0 191411 319 1 order 191412 0 family 1 106 12485 20 Chlorobiaceae 3441 4 Chlorobaculum 256319 0 40 genus 1 species 0 274539 Chlorobaculum parvum 1 1171 0 1097 species 1194 1 Chlorobaculum tepidum Chlorobaculum limnaeum 1 1036 species 0 274537 Chloroherpeton 368 2 genus 1 3 100715 0 Chloroherpeton thalassium 1 365 species 0 100716 0 274493 no rank 6377 8 2 genus 1 1091 0 Chlorobium 3616 5 species 1092 0 Chlorobium limicola 1 1200 0 337090 species 664 1 Chlorobium chlorochromatii species 0 1096 Chlorobium phaeobacteroides 1 954 1094 0 species 796 1 Chlorobium phaeovibrioides 1099 0 2 genus 1 3 2761 Pelodictyon 0 1100 species 1288 1 Pelodictyon luteolum 1471 1 Pelodictyon phaeoclathratiforme 0 34090 species 1 genus 4 0 1101 Prosthecochloris 2193 5 species 1102 0 Prosthecochloris aestuarii 1 250 3 1939 2632826 0 no rank 1 705 Prosthecochloris sp. HL-130-GSB 0 1974213 species 0 1868325 species 537 1 Prosthecochloris sp. CIB 2401 0 281093 species 697 1 Prosthecochloris sp. GSB1 4 3651 phylum 0 65842 3651 4 Fibrobacteria 0 204430 1 class 5 order 0 218872 3646 3 3646 3 Fibrobacteraceae 204431 0 family 1 4 Fibrobacter 2 3642 2 1 genus 0 832 Fibrobacter succinogenes 1 3640 species 833 0 3501 8 phylum 142182 0 8 3501 Gemmatimonadetes 0 219685 122 1 class Gemmatimonadales 7 3379 order 1 53 219686 0 0 219687 1 family 53 3326 6 Gemmatimonadaceae 1204 2 Gemmatirosa 1706036 0 genus 1 3 0 861299 species 1 1201 Gemmatirosa kalamazoonesis 36 1 genus 0 173479 Gemmatimonas 2069 3 1333 1 Gemmatimonas aurantiaca 0 173480 species 0 1379270 species 700 1 Gemmatimonas phototrophica 251 2 phylum 0 456828 Candidatus Cloacimonas 251 2 1 1 genus 0 456826 1 250 Candidatus Cloacimonas acidaminovorans 456827 0 species 21 11388 Acidobacteria 57723 0 phylum 1 1 class 1 5 1562566 0 Blastocatellia 790 3 4 genus 1 458032 0 Chloracidobacterium 2 785 species 458033 0 Chloracidobacterium thermophilum 1 781 10597 17 Acidobacteriia 0 204432 139 1 class order 1 58 204433 0 Acidobacteriales 8031 12 46 1 family 0 204434 Acidobacteriaceae 11 7973 17 genus 1 940557 0 Granulicella 3653 3 0 940614 species 1 2215 Granulicella mallensis species 0 940615 Granulicella tundricola 1 1421 0 658061 1 genus 9 2 678 Candidatus Koribacter Candidatus Koribacter versatilis 669 1 species 658062 0 0 33973 1 genus 21 2 1543 Acidobacterium species 33075 0 Acidobacterium capsulatum 1 1522 392733 0 genus 1 5 3 2053 Terriglobus 1 689 Terriglobus saanensis 870903 0 species 1359 1 Terriglobus roseus 392734 0 species Solibacterales 4 2427 35 1 order 0 332160 12 family 1 332161 0 Solibacteraceae 2392 3 2380 2 Candidatus Solibacter 332162 0 18 genus 1 332163 0 species 2362 1 Candidatus Solibacter usitatus 0 1783272 clade 1681 5431324 19086 101 Tenericutes 544448 0 phylum 1 2 no rank 0 713063 1775 2 species 1911683 0 Tenericutes bacterium MZ-XQ 997 1 species 0 1911684 Tenericutes bacterium MO-XQ 778 1 0 31969 31 1 class 96 16952 Mollicutes order 1 7 186328 0 Entomoplasmatales 6836 39 24 4662 Spiroplasmataceae 0 2131 33 1 family 0 2132 111 1 genus 4629 23 Spiroplasma 216936 0 species 83 1 Spiroplasma diminutum species 216942 0 Spiroplasma litorale 1 360 species 1114980 0 Spiroplasma atrichopogonis 145 1 species 0 216937 Spiroplasma floricola 129 1 2 998 no rank 0 2637901 1914410 0 species 499 1 Spiroplasma sp. NBRC 100390 Spiroplasma sp. TU-14 1 499 species 1898044 0 species 216944 0 Spiroplasma sabaudiense 136 1 Spiroplasma chrysopicola 1 177 species 0 216933 200 1 Spiroplasma cantharicola 0 362837 species 216946 0 species 1 441 Spiroplasma turonicum 1 219 Spiroplasma helicoides 0 216938 species 1 165 Spiroplasma citri 0 2133 species 63 1 Spiroplasma kunkelii 0 47834 species 1 212 Spiroplasma eriocheiris 0 315358 species Spiroplasma mirum 1 136 species 2144 0 Spiroplasma syrphidicola 1 94 species 216945 0 1 242 Spiroplasma clarkii 2139 0 species 133 1 Spiroplasma culicicola 0 216935 species 0 216934 species 122 1 Spiroplasma corruscae Spiroplasma taiwanense 1 259 species 2145 0 1 135 Spiroplasma monobiae 2136 0 species species 0 2137 Spiroplasma apis 69 1 2167 14 Entomoplasmataceae 0 33925 4 1 family Entomoplasma 363 5 1 genus 13 0 46238 103 1 Entomoplasma melaleucae 0 81459 species 1 99 Entomoplasma luminosum 0 214888 species Entomoplasma freundtii 1 52 species 74700 0 0 215578 species 1 96 Entomoplasma somnilux 31 genus 1 46239 0 Mesoplasma 1800 8 Mesoplasma coleopterae 1 170 species 324078 0 species 0 2149 Mesoplasma entomophilum 1 158 285 1 Mesoplasma lactucae 138853 0 species 216427 0 species 1 503 Mesoplasma chauliocola Mesoplasma tabanidae 1 93 species 219745 0 1 326 Mesoplasma florum 0 2151 species 225999 0 species 234 1 Mesoplasma syrphidae 13 1948 Acholeplasmatales 186329 0 order 1 4 1944 12 Acholeplasmataceae 2146 0 family 1 1 Acholeplasma 1554 5 18 genus 1 2147 0 1 354 Acholeplasma laidlawii 0 2148 species 291 1 Acholeplasma brassicae 0 61635 species 391 1 Acholeplasma palmae 38986 0 species 500 1 Acholeplasma oculi 0 35623 species 1 genus 19 0 33926 Candidatus Phytoplasma 389 6 85620 0 species group 201 3 Onion yellows phytoplasma 1 74 species 0 100379 species 0 229545 Aster yellows witches'-broom phytoplasma 1 64 Maize bushy stunt phytoplasma 63 1 species 202462 0 species group 0 85632 97 1 species 59748 0 Candidatus Phytoplasma australiense 1 97 72 1 0 85630 species group species 0 37692 Candidatus Phytoplasma mali 1 72 43 8137 Mycoplasmatales 2085 0 14 order 1 0 2092 1 family 6 8123 42 Mycoplasmataceae 2637 12 genus 0 2767358 0 29553 species 43 1 Mycoplasma bovirhinis 0 28903 species 877 1 Mycoplasma bovis 742 1 Mycoplasma agalactiae 2110 0 species species 171284 0 Mycoplasma cynos 86 1 91 1 Mycoplasma arginini 2094 0 species species 29555 0 Mycoplasma canis 1 77 2112 0 species 61 1 Mycoplasma bovigenitalium species 2107 0 Mycoplasma pulmonis 200 1 275 1 Mycoplasma pullorum 48003 0 species Mycoplasma synoviae 1 35 species 2109 0 2115 0 species 95 1 Mycoplasma fermentans species 0 2113 Mycoplasma californicum 55 1 264 2 genus 2129 0 Ureaplasma urealyticum 172 1 species 0 2130 134821 0 species 1 92 Ureaplasma parvum 2093 0 genus 1 34 5216 27 Mycoplasma 2098 0 species 1 220 Mycoplasma hominis species 0 2118 Mycoplasma mobile 467 1 3 2139 0 656088 species group Mycoplasma mycoides 1 1823 species 0 2102 1 104 Mycoplasma leachii 0 2105 species 0 2095 species 1 212 Mycoplasma capricolum 266 1 Mycoplasma crocodyli 50052 0 species Mycoplasma dispar 1 62 species 0 86660 1 151 no rank 0 2683645 1 151 Mycoplasma sp. (ex Biomphalaria glabrata) 0 1749074 species species 2100 0 Mycoplasma hyorhinis 74 1 Mycoplasma arthritidis 1 139 species 0 2111 species 0 136241 Mycoplasma haemocanis 30 1 1 81 Mycoplasma suis 57372 0 species 1 24 Mycoplasma parvum 984991 0 species species 2097 0 Mycoplasma genitalium 1 145 Mycoplasma flocculare 208 1 species 0 2128 Mycoplasma putrefaciens 1 57 species 2123 0 0 2104 species 23 1 Mycoplasma pneumoniae 51365 0 species 1 204 Mycoplasma yeatsii 45362 0 species 1 276 Mycoplasma bovoculi 2099 0 species 97 1 Mycoplasma hyopneumoniae 0 65123 species 42 1 Mycoplasma wenyonii 29501 0 species 10 1 Mycoplasma haemofelis 0 2096 species 1 266 Mycoplasma gallisepticum 1 53 Mycoplasma ovis 0 171632 species Mycoplasma canadense 1 40 species 29554 0 Mycoplasma penetrans 108 1 species 28227 0 2 357 2799557 0 no rank Candidatus Izimaplasma 357 2 genus 1 1 1912503 0 no rank 0 2624196 1 356 species 0 1541959 Candidatus Izimaplasma sp. HR1 1 356 phylum 1297 0 34 23660 23660 34 Deinococci 188787 0 class 1 155 13589 15 Deinococcales 118964 0 115 order 1 1 family 62 0 183710 Deinococcaceae 13474 14 13412 13 Deinococcus 0 1298 183 1 genus 1203 1 Deinococcus actinosclerus 1768108 0 species 0 1299 species 1135 1 Deinococcus radiodurans 1 1415 Deinococcus gobiensis 502394 0 species species 68909 0 Deinococcus geothermalis 804 1 species 0 1309411 Deinococcus soli Cha et al. 2016 1 989 0 309887 species 1 903 Deinococcus maricopensis 1 661 Deinococcus peraridilitoris 0 432329 species species 0 1182571 Deinococcus swuensis 1682 1 Deinococcus proteolyticus 1 1140 species 0 55148 1 894 no rank 2623546 0 894 1 Deinococcus sp. NW-56 2080419 0 species 1143 1 Deinococcus puniceus 1182568 0 species species 0 310783 Deinococcus deserti 1 1260 931 2 order 0 2762275 2 931 Trueperaceae 332247 0 6 family 1 925 1 genus 0 332248 species 332249 0 Truepera radiovictrix 925 1 16 8985 Thermales 0 68933 37 1 order 0 188786 1 family 42 8948 15 Thermaceae 7 genus 1 208447 0 Oceanithermus 1046 2 species 187137 0 Oceanithermus profundus 1 1039 3 2367 Meiothermus 65551 0 genus 1 16 0 277 species 1156 1 Meiothermus ruber 0 52022 species 1195 1 Meiothermus silvanus 570 1 0 186191 genus 570 1 Marinithermus hydrothermalis 0 186192 species 4923 8 Thermus 0 270 91 1 genus 1 876 no rank 2619321 0 1 876 Thermus sp. CCB_US3_UF1 0 1111069 species species 274 0 Thermus thermophilus 1 927 626 1 Thermus brockianus 56956 0 species species 456163 0 Thermus parvatiensis 1 375 0 56957 species 694 1 Thermus oshimai Thermus scotoductus 1 828 species 0 37636 species 0 271 Thermus aquaticus 1 506 phylum 0 67819 4 698 1 class 1 1663419 0 Fimbriimonadia 698 4 1 order 1 0 1663425 Fimbriimonadales 697 3 696 2 1663426 0 family 696 2 Fimbriimonas 1005038 0 genus 1 1 1 695 Fimbriimonas ginsengisoli 0 1005039 species 146 1 phylum 0 1239 Firmicutes 4433497 717 64 1 class 0 909932 Negativicutes 86101 31 14 26721 Selenomonadales 909929 0 order 1 62 23383 9 Selenomonadaceae 1843491 0 67 family 1 Megamonas 2 3276 8 genus 1 158846 0 158847 0 species 1 3268 Megamonas hypermegale 970 0 130 genus 1 20040 6 Selenomonas 4145 1 Selenomonas sputigena 69823 0 species 971 0 species 5438 1 Selenomonas ruminantium 2637378 0 no rank 3 10327 Selenomonas sp. oral taxon 478 3980 1 species 712538 0 1884263 0 species 3087 1 Selenomonas sp. oral taxon 920 Selenomonas sp. oral taxon 136 3260 1 species 0 713030 4 3276 Sporomusaceae 1843490 0 family 1 2 genus 1 80 365348 0 Pelosinus 3 3274 no rank 2629460 0 1 1304 484770 0 species 1304 1 Pelosinus sp. UFO1 0 365349 species 1 1890 Pelosinus fermentans 11 36706 Veillonellales 1843489 0 340 order 1 10 36366 Veillonellaceae 0 31977 1 family 225 909928 0 27 genus 1 4522 2 Negativicoccus species 1702287 0 Negativicoccus massiliensis 4495 1 29465 0 10 genus 1 3 5842 Veillonella Veillonella parvula 1 3650 species 29466 0 species 0 248315 Veillonella rodentium 1 2182 0 906 41 1 genus 2 10808 Megasphaera 1 10767 Megasphaera elsdenii 0 907 species 14969 2 Dialister 0 39948 19 1 genus 14950 1 Dialister pneumosintes 39950 0 species 30 order 1 1843488 0 Acidaminococcales 5 22610 27 family 1 909930 0 Acidaminococcaceae 22580 4 3 22553 Acidaminococcus 0 904 1 genus 61 187327 0 species 10519 1 Acidaminococcus intestini 0 905 species 1 11973 Acidaminococcus fermentans 1534 5 Limnochordia 0 1676648 1 class 3 12 order 1 1676649 0 Limnochordales 1531 4 0 1676650 12 1 family 1519 3 Limnochordaceae 0 1676651 1 genus 22 1507 2 Limnochorda 0 1555112 species 1485 1 Limnochorda pilosa 329 class 1 186801 0 Clostridia 220 3925809 Natranaerobiales 852 4 order 1 3 485256 0 3 849 Natranaerobiaceae 485255 0 family 1 2 375928 0 genus 1 21 2 847 Natranaerobius 1 826 Natranaerobius thermophilus 375929 0 species 1139 3 0 2770089 order 521 2 family 2770093 0 2 521 Thermosediminibacter 291988 0 12 genus 1 1 509 Thermosediminibacter oceani 0 291990 species family 0 2770092 618 1 499228 0 genus 1 618 499229 0 species 618 1 Tepidanaerobacter acetatoxydans Halanaerobiales 2825 11 3 order 1 53433 0 972 0 family 1 5 6 1811 Halanaerobiaceae 32636 0 genus 1 8 676 2 Halothermothrix species 31909 0 Halothermothrix orenii 1 668 0 2330 43 1 genus 3 1130 Halanaerobium 0 2331 species 281 1 Halanaerobium praevalens 656519 0 species 1 806 Halanaerobium hydrogeniformans 53434 0 14 family 1 1011 4 Halobacteroidaceae 42417 0 1 genus 1 2 475 Halobacteroides 1 474 Halobacteroides halobius 0 42422 species 28186 0 genus 522 1 species 28187 0 Acetohalobium arabaticum 522 1 Clostridiales 164 3903352 1 order 10675 0 186802 30045 12 0 2304686 family 1808 1 0 2304693 genus species 0 84032 [Clostridium] thermosuccinogenes 1808 1 2 1440 Mageeibacillus 1637257 0 1 genus 1 0 884684 species 1 1439 Mageeibacillus indolicus 236752 0 2 genus 1 350 2 Fastidiosipila species 236753 0 Fastidiosipila sanguinis 1 348 5569 3 genus 0 2304692 species 1677857 0 Herbivorax saccincola 1519 1 Ruminiclostridium thermocellum 1789 1 species 0 1515 0 288965 species 1 2261 [Clostridium] clariflavum 1758 2 Ruminiclostridium 1508657 0 282 genus 1 [Clostridium] cellulolyticum 1476 1 species 0 1521 2305130 0 no rank 1 17734 species 1834198 0 Ruminiclostridium sp. KB18 1 17734 1 1386 genus 0 2304691 [Clostridium] stercorarium 1386 1 species 1510 0 864 3 Syntrophomonadaceae 68298 0 2 family 1 453 1 genus 862 0 species 863 0 Syntrophomonas wolfei 1 453 genus 129001 0 409 1 Syntrophothermus lipocalidus 409 1 species 0 86170 Symbiobacteriaceae 2268 3 family 1 15 543349 0 Symbiobacterium 2 2253 genus 1 10 2733 0 species 0 2734 Symbiobacterium thermophilum 1 2243 Heliobacteriaceae 3 2545 24 family 1 31984 0 2521 2 Heliobacterium 0 2697 1 genus 118 35701 0 species 1 2403 Heliobacterium modesticaldum 0 541000 327 1 family 2098712 13 Ruminococcaceae 111 1 genus 0 1263 Ruminococcus 3 25206 0 1264 species 1 9722 Ruminococcus albus 15373 1 Ruminococcus bicirculans 1160721 0 species 1 genus 27 0 253238 Ethanoligenens 2 8078 8051 1 Ethanoligenens harbinense 253239 0 species 2921 1 no rank 552397 0 [Clostridium] cellulosi 2921 1 species 29343 0 Herbivorax 13 1 genus 0 1890281 genus 1 53 946234 0 Flavonifractor 2 48825 species 0 292800 Flavonifractor plautii 1 48772 2305133 0 no rank 8414 1 0 1572656 species 8414 1 Ruminococcaceae bacterium CPB6 216851 0 1009 genus 1 2004928 2 Faecalibacterium species 853 0 Faecalibacterium prausnitzii 1 2003919 Peptococcaceae 29 26092 1017 1 family 0 186807 0 2282742 genus 1 690 1 690 Desulfotomaculum acetoxidans 0 58138 species 3 genus 1 278993 0 Thermincola 2 1385 0 863643 species 1382 1 Thermincola potens 1501 2 Dehalobacterium 0 51514 2 1 genus Dehalobacterium formicoaceticum 1 1499 species 51515 0 Dehalobacter 4 5367 1 genus 39 0 56112 Dehalobacter restrictus 1721 1 species 0 55583 2 3607 2635733 0 no rank Dehalobacter sp. DCA 1 1651 species 1147129 0 0 1131462 species 1956 1 Dehalobacter sp. CF 1 1131 genus 2282740 0 1 1131 Desulfotomaculum gibsoniae 102134 0 species Candidatus Desulforudis 2 1047 1 genus 4 0 471826 Candidatus Desulforudis audaxviator 1 1043 species 471827 0 genus 1 46 36853 0 Desulfitobacterium 5 5057 Desulfitobacterium dehalogenans 1 1019 species 36854 0 0 233055 species 1 919 Desulfitobacterium dichloroeliminans species 142877 0 Desulfitobacterium metallireducens 540 1 Desulfitobacterium hafniense 2533 1 species 0 49338 Desulfotomaculum 5 5305 1 genus 63 0 1562 1129 1 Desulfotomaculum ruminis 1564 0 species Desulfotomaculum ferrireducens 2129 1 species 0 1833852 species 0 1565 Desulfotomaculum nigrificans 1 1246 1 738 Desulfotomaculum reducens 0 59610 species 1 genus 1 51196 0 Syntrophobotulus 890 2 species 0 51197 Syntrophobotulus glycolicus 1 889 2702 4 Desulfosporosinus 0 79206 71 1 genus species 0 1563 Desulfosporosinus orientis 799 1 species 0 885581 Desulfosporosinus acidiphilus 996 1 Desulfosporosinus meridiei 1 836 species 79209 0 3 14169 Christensenellaceae 0 990719 28 1 family 14141 2 Christensenella 990721 0 751 genus 1 Christensenella massiliensis 1 13390 species 1805714 0 0 186804 124 1 family 11 40836 Peptostreptococcaceae 885 2 Filifactor 0 44259 1 genus 2 species 0 143361 Filifactor alocis 883 1 700 1 1411023 0 no rank 700 1 Peptostreptococcaceae bacterium oral taxon 929 0 2081703 species 1870884 0 66 genus 1 35697 2 Clostridioides 35631 1 Clostridioides difficile 1496 0 species 1 901 genus 0 1849828 1 901 Paeniclostridium sordellii 0 1505 species Acetoanaerobium 823 2 1 genus 2 0 186831 1 821 Acetoanaerobium sticklandii 1511 0 species 1706 2 Peptoclostridium 1481960 0 2 genus 1 1 1704 Peptoclostridium acidaminophilum 1731 0 species family 1 784 31979 0 Clostridiaceae 41 76825 390805 0 genus 1 17 2243 2 Geosporobacter 1 2226 Geosporobacter ferrireducens 1424294 0 species 0 114627 5 1 genus 2551 3 Alkaliphilus Alkaliphilus metalliredigens 1324 1 species 0 208226 species 461876 0 Alkaliphilus oremlandii 1 1222 0 1485 1 genus 354 68749 30 Clostridium Clostridium botulinum 1 5028 species 0 1491 species 1216932 0 Clostridium bornimense 749 1 species 238834 0 Clostridium estertheticum 764 1 2009 1 Clostridium baratii 1561 0 species 1 6317 Clostridium tetani 1513 0 species 2024 1 Clostridium perfringens 0 1502 species 0 36745 species 2167 1 Clostridium saccharoperbutylacetonicum 1494 0 species 1107 1 Clostridium cochlearium Clostridium taeniosporum 1 886 species 394958 0 1488 0 species 939 1 Clostridium acetobutylicum Clostridium chauvoei 763 1 species 0 46867 Clostridium kluyveri 1 1423 species 0 1534 84023 0 species 1225 1 Clostridium autoethanogenum 1509 0 species 1 889 Clostridium sporogenes 1 2634 Clostridium cellulovorans 1493 0 species Clostridium beijerinckii 1 2821 species 0 1520 1 1276 Clostridium ljungdahlii 0 1538 species Clostridium saccharobutylicum 1 1755 species 0 169679 Clostridium tyrobutyricum 1 944 species 1519 0 1 2465 Clostridium pasteurianum 0 1501 species 1548 0 species 1 1522 Clostridium scatologenes 21004 2 no rank 0 2614128 0 755731 species 1 2069 Clostridium sp. BNL1100 0 1042156 species 1 18935 Clostridium sp. SY8519 1657 1 Clostridium argentinense 29341 0 species 0 1497 species 1 1022 Clostridium formicaceticum Clostridium butyricum 1 1970 species 1492 0 694 1 Clostridium novyi 0 1542 species Clostridium carboxidivorans 1213 1 species 217159 0 84022 0 species 1128 1 Clostridium aceticum 2378 4 Candidatus Arthromitus 49082 0 7 genus 1 2371 3 no rank 0 2638829 1230 1 Candidatus Arthromitus sp. SFB-rat-Yit 1041504 0 species species 0 1508644 Candidatus Arthromitus sp. SFB-mouse-NL 1 538 603 1 Candidatus Arthromitus sp. SFB-mouse 49118 0 species genus 1981033 0 Mordavella 1 120 3 15237 Oscillospiraceae 0 216572 1 family 5 15232 2 Oscillibacter 0 459786 1 genus 27 species 351091 0 Oscillibacter valericigenes 1 15205 family 1 1 186806 0 Eubacteriaceae 5 13129 1160 2 Acetobacterium 0 33951 1 genus 1 Acetobacterium woodii 1 1159 species 0 33952 1 genus 847 0 1730 Eubacterium 2 11968 11121 1 Eubacterium limosum 0 1736 species Lachnospiraceae 1470084 27 family 1 1188 186803 0 Herbinix 2 3323 6 1 genus 0 1663717 Herbinix luporum 1 3317 species 1679721 0 Anaerotignum 2 2747 1 genus 1 2039240 0 Anaerotignum propionicum 2746 1 species 28446 0 0 28050 genus 1 96590 species 0 39485 [Eubacterium] eligens 1 96590 genus 1 61 572511 0 Blautia 3 79978 species 1322 0 Blautia hansenii 1 57193 1 22724 no rank 2648079 0 species 0 1796616 Blautia sp. YL58 22724 1 genus 0 2719313 1 105160 species 208479 0 [Clostridium] bolteae 1 105160 2569097 0 genus 70673 1 species 0 39488 [Eubacterium] hallii 1 70673 0 830 11 1 genus 3 13087 Butyrivibrio species 0 43305 Butyrivibrio proteoclasticus 1 6918 185008 0 species 6158 1 Butyrivibrio hungatei 207244 0 genus 1 22 2 67993 Anaerostipes 1 67971 Anaerostipes hadrus 0 649756 species 1506553 0 232 genus 1 83631 4 Lachnoclostridium Lachnoclostridium phytofermentans 1 4559 species 66219 0 1871021 0 species 35508 1 Lachnoclostridium phocaeense 1 43332 no rank 2608895 0 Lachnoclostridium sp. YL32 1 43332 species 0 1834196 Cellulosilyticum 2 2299 1 genus 1 0 698776 1 2298 Cellulosilyticum lentocellum 29360 0 species Roseburia 2 757997 18 1 genus 0 841 Roseburia hominis 757979 1 species 301301 0 0 186928 no rank 2 125272 0 712991 species 1 23839 Lachnospiraceae bacterium oral taxon 500 species 0 39491 [Eubacterium] rectale 101433 1 genus 2719231 0 60146 1 species 0 84030 [Clostridium] saccharolyticum 1 60146 10 101871 no rank 538999 0 2717089 0 genus 51804 1 species 2086584 0 Mordavella sp. Marseille-P3756 1 51804 Intestinimonas 2 42611 genus 1 810 1392389 0 0 1297617 species 1 41801 Intestinimonas butyriciproducens 0 539000 1 family 2 1646 3 Clostridiales Family XVII. Incertae Sedis genus 1 11 73918 0 Thermaerobacter 1644 2 0 73919 species 1 1633 Thermaerobacter marianensis Clostridiales Family XIII. Incertae Sedis 4 5810 1 family 11 0 543314 Mogibacterium 2607 2 genus 1 11 86331 0 Mogibacterium diversum 1 2596 species 0 114527 143393 0 species 1 3192 [Eubacterium] sulci 1 order 84 0 68295 Thermoanaerobacterales 17312 37 3 616 Thermoanaerobacterales Family IV. Incertae Sedis 0 543372 1 family 8 252965 0 genus 1 23 2 608 Mahella 585 1 Mahella australiensis 0 252966 species Thermoanaerobacterales Family III. Incertae Sedis 6171 13 29 1 family 0 543371 0 44000 1 genus 117 3922 9 Caldicellulosiruptor Caldicellulosiruptor kronotskyensis 1 519 species 0 413889 species 0 31899 Caldicellulosiruptor bescii 532 1 44001 0 species 1 317 Caldicellulosiruptor saccharolyticus Caldicellulosiruptor owensensis 419 1 species 55205 0 0 52765 species 626 1 Caldicellulosiruptor kristjanssonii species 0 717609 Caldicellulosiruptor obsidiansis 560 1 1 367 Caldicellulosiruptor hydrothermalis 0 413888 species species 0 52766 Caldicellulosiruptor lactoaceticus 465 1 2 genus 1 28895 0 Thermoanaerobacterium 3 2220 1 535 Thermoanaerobacterium xylanolyticum 0 29329 species Thermoanaerobacterium thermosaccharolyticum 1 1683 species 0 1517 1 263 227387 0 family 263 1 genus 0 227388 1 263 Thermodesulfobium narugense 184064 0 species Thermoanaerobacteraceae 10178 19 20 1 family 0 186814 42857 0 no rank 1697 4 839 2 Ammonifex 42837 0 genus 1 11 828 1 Ammonifex degensii 0 42838 species Moorella 858 2 1 genus 14 0 44260 Moorella thermoacetica 844 1 species 0 1525 1754 0 460 genus 1 6276 9 Thermoanaerobacter Thermoanaerobacter italicus 1105 1 species 108150 0 Thermoanaerobacter mathranii 1 864 species 583357 0 species 0 496866 Thermoanaerobacter pseudethanolicus 592 1 Thermoanaerobacter brockii 592 1 species 29323 0 1493 2 0 2636821 no rank species 399726 0 Thermoanaerobacter sp. X514 782 1 species 573062 0 Thermoanaerobacter sp. X513 1 711 0 46354 species 1 511 Thermoanaerobacter wiegelii 0 2325 species 1 659 Thermoanaerobacter kivui 0 249529 12 1 genus 572 2 Caldanaerobacter species 0 911092 Caldanaerobacter subterraneus 560 1 1 1060 genus 0 129957 1060 1 Carboxydothermus hydrogenoformans 129958 0 species 1 genus 7 0 140458 Thermacetogenium 553 2 Thermacetogenium phaeum 546 1 species 85874 0 1 class 3 0 1737404 Tissierellia 6886 18 444 2 no rank 0 1737407 1 genus 4 0 1582879 Ezakiella 444 2 Ezakiella massiliensis 1 440 species 1852374 0 116 1 order 0 1737405 Tissierellales 6439 15 0 1570339 1 family 285 5678 12 Peptoniphilaceae 1578 2 Murdochiella 0 1161127 1 genus 2 1852373 0 species 1 1576 Murdochiella vaginalis 3 1205 Anaerococcus 0 165779 1 genus 2 1 737 Anaerococcus prevotii 33034 0 species Anaerococcus mediterraneensis 1 466 species 1870984 0 976 2 Peptoniphilus 0 162289 1 genus 4 1 972 0 2637196 no rank species 1912856 0 Peptoniphilus sp. ING2-D1G 1 972 150022 0 4 genus 1 910 2 Finegoldia Finegoldia magna 1 906 species 0 1260 genus 1 6 543311 0 Parvimonas 2 724 Parvimonas micra 1 718 species 0 33033 2 645 family 0 2042895 Gottschalkia 645 2 genus 1 5 1505664 0 species 1556 0 Gottschalkia acidurici 1 640 396961 428 Bacilli 0 91061 411 1 class 1 order 556 0 1385 Bacillales 261 209642 Listeriaceae 3780 9 family 1 13 186820 0 18 1 genus 0 1637 Listeria 6 3114 0 1640 species 352 1 Listeria seeligeri 0 1643 species 1 357 Listeria welshimeri Listeria monocytogenes 1105 1 species 0 1639 0 1642 species 476 1 Listeria innocua Listeria ivanovii 806 1 species 0 1638 1 genus 1 2755 0 Brochothrix 653 2 species 0 2756 Brochothrix thermosphacta 1 652 1 family 191 0 90964 Staphylococcaceae 41 19479 2 922 Salinicoccus 0 45669 1 genus 1 1 921 Salinicoccus halodurans 0 407035 species 0 69965 1 genus 5 4 936 Macrococcus 1 321 Macrococcus caseolyticus 69966 0 species 332 1 Macrococcus canis 1855823 0 species 1 278 2619255 0 no rank species 1898474 0 Macrococcus sp. IME1552 278 1 33 17167 Staphylococcus 0 1279 1 genus 189 638 1 Staphylococcus simiae 308354 0 species species 0 985762 Staphylococcus agnetis 289 1 1 391 Staphylococcus nepalensis 214473 0 species Staphylococcus aureus 2435 1 species 0 1280 0 1294 species 146 1 Staphylococcus muscae 1 441 Staphylococcus carnosus 1281 0 species species 0 45972 Staphylococcus pasteuri 1 597 species 0 70258 Staphylococcus piscifermentans 565 1 Staphylococcus hyicus 523 1 species 0 1284 species 1288 0 Staphylococcus xylosus 1 351 0 29388 species 255 1 Staphylococcus capitis Staphylococcus saprophyticus 1 358 species 29385 0 species 1286 0 Staphylococcus simulans 1 566 species 0 1295 Staphylococcus schleiferi 379 1 1 873 Staphylococcus condimenti 0 70255 species 1290 0 species 478 1 Staphylococcus hominis Staphylococcus cohnii 581 1 species 29382 0 species 29384 0 Staphylococcus kloosii 198 1 Staphylococcus argenteus 1 490 species 985002 0 0 1292 species 264 1 Staphylococcus warneri Staphylococcus equorum 910 1 species 0 246432 Staphylococcus epidermidis 662 1 species 1282 0 no rank 91994 0 791 1 1 791 Staphylococcus sp. AntiMn-1 0 1715860 species 61015 0 species 1 476 Staphylococcus succinus species 155085 0 Staphylococcus lutrae 1 193 0 28035 species 1 508 Staphylococcus lugdunensis 46127 0 species 1 250 Staphylococcus felis 1 418 Staphylococcus pseudintermedius 0 283734 species 1 246 Staphylococcus sciuri 1296 0 species species 0 170573 Staphylococcus pettenkoferi 1 285 1217 1 Staphylococcus haemolyticus 1283 0 species Staphylococcus stepanovicii 204 1 species 643214 0 0 2005363 genus 263 1 1849491 0 species 1 263 Auricoccus indicus 1 1319 family 186821 0 no rank 0 663587 1 1319 0 85683 species 1319 1 [Bacillus] selenitireducens 0 186824 family 671 3 1 1 Laceyella 292635 0 genus 670 2 Novibacillus 0 1677050 24 1 genus species 1471761 0 Novibacillus thermophilus 646 1 Planococcaceae 15656 25 family 1 11 186818 0 648802 0 genus 433 1 species 241244 0 Rummeliibacillus stabekisii 433 1 987 1 genus 0 1649 1 987 0 2644826 no rank Kurthia sp. 11kri321 1 987 species 0 1750719 genus 1 61 1372 0 Planococcus 6730 12 812 1 Planococcus faecalis 1598147 0 species 0 192421 species 1 1211 Planococcus maritimus 1215089 0 species 911 1 Planococcus halocryophilus species 1302659 0 Planococcus sp. L10.15 1 179 Planococcus antarcticus 618 1 species 161360 0 Planococcus rifietoensis 1 414 species 0 200991 Planococcus kocurii 1006 1 species 0 1374 0 2662419 no rank 2 804 2058136 0 species 526 1 Planococcus sp. MB-3u-03 1526927 0 species 1 278 Planococcus sp. PAMC 21323 Planococcus donghaensis 1 238 species 414778 0 476 1 Planococcus plakortidis 0 1038856 species genus 1 2 157226 0 Jeotgalibacillus 2 642 0 1508404 species 640 1 Jeotgalibacillus malaysiensis genus 1 15 1569 0 Sporosarcina 4884 5 1958 2 no rank 2647733 0 Sporosarcina sp. P37 954 1 species 0 1930546 0 1930764 species 1 1004 Sporosarcina sp. P33 569 1 Sporosarcina psychrophila 0 1476 species species 1571 0 Sporosarcina ureae 1 2342 3 1969 Solibacillus 648800 0 genus 1 9 500 1 no rank 2637870 0 species 0 2048654 Solibacillus sp. R5-41 1 500 0 76853 species 1460 1 Solibacillus silvestris 212 family 1 186822 0 Paenibacillaceae 69407 46 3 2481 0 85151 no rank 0 55079 1 genus 4 2481 3 Aneurinibacillus no rank 2642329 0 1 1719 1450761 0 species 1719 1 Aneurinibacillus sp. XH2 758 1 Aneurinibacillus soli 0 1500254 species 24 genus 1 76632 0 Thermobacillus 2 1839 species 0 377615 Thermobacillus composti 1 1815 Paenibacillus 36 61682 1 genus 2006 0 44249 Paenibacillus peoriae 736 1 species 0 59893 species 1126833 0 Paenibacillus beijingensis 1154 1 species 0 1616788 Paenibacillus bovis 1 1722 891 1 Paenibacillus crassostreae 1763538 0 species 0 189426 species 1 639 Paenibacillus odorifer 1028 1 Paenibacillus terrae 0 159743 species species 160799 0 Paenibacillus borealis 1 2591 species 0 528191 Paenibacillus xylanexedens 1 1160 Paenibacillus graminis 3176 1 species 0 189425 1 4626 2044880 0 species group 1 4626 Paenibacillus riograndensis 0 483937 species 20996 13 185978 0 no rank Paenibacillus sp. FSL R7-0331 1 2043 species 0 1536773 species 0 324057 Paenibacillus sp. JDR-2 1700 1 Paenibacillus sp. IHBB 10380 481 1 species 1566358 0 0 1536772 species 1 2249 Paenibacillus sp. FSL R7-0273 1536769 0 species 1 2591 Paenibacillus sp. FSL P4-0081 species 1536771 0 Paenibacillus sp. FSL R5-0912 1 3074 1002 1 Paenibacillus sp. FSL H7-0737 1536775 0 species 0 481743 species 1852 1 Paenibacillus sp. Y412MC10 1121 1 Paenibacillus sp. BIHB4019 0 1870819 species Paenibacillus sp. lzh-N1 1 837 species 0 2069255 species 0 1536774 Paenibacillus sp. FSL H7-0357 1740 1 species 0 1695218 Paenibacillus sp. 32O-W 1426 1 1536770 0 species 1 880 Paenibacillus sp. FSL R5-0345 species 61624 0 Paenibacillus mucilaginosus 1 2619 species 414771 0 Paenibacillus donghaensis 1980 1 species 172713 0 Paenibacillus kribbensis 1012 1 species 0 44251 Paenibacillus durus 1 2566 Paenibacillus naphthalenovorans 1104 1 species 0 162209 Paenibacillus sabinae 1654 1 species 365617 0 0 169760 species 1982 1 Paenibacillus stellifer 1171 1 Paenibacillus larvae 1464 0 species Paenibacillus yonginensis 1 1605 species 0 1462996 Paenibacillus polymyxa 2580 1 species 1406 0 species 0 1870820 Paenibacillus ihbetae 1 1998 species 0 1178515 Paenibacillus swuensis 1 686 0 55080 10 1 genus 3193 4 Brevibacillus species 54913 0 Brevibacillus formosus 1 627 1314 1 Brevibacillus laterosporus 0 1465 species 1242 1 Brevibacillus brevis 0 1393 species 9 6082 Alicyclobacillaceae 186823 0 family 1 19 16 genus 1 1129704 0 Kyrpidia 3 902 species 0 33943 Kyrpidia tusciae 1 500 1 386 Kyrpidia sp. EA-1 2055160 0 species 3365 3 Tumebacillus 0 432330 76 1 genus species 1903704 0 Tumebacillus avium 2321 1 Tumebacillus algifaecis 1 968 species 1214604 0 Alicyclobacillus 2 1796 1 genus 18 0 29330 1 1778 Alicyclobacillus acidocaldarius 0 405212 species 0 186817 271 1 family 117 88139 Bacillaceae 15 8466 Geobacillus 0 129337 1 genus 1314 no rank 2642459 0 2058 6 0 544556 species 1 244 Geobacillus sp. Y412MC61 471223 0 species 728 1 Geobacillus sp. WCH70 0 581103 species 477 1 Geobacillus sp. Y4.1MC1 1 160 Geobacillus sp. GHH01 1233873 0 species species 691437 0 Geobacillus sp. C56-T3 228 1 species 550542 0 Geobacillus sp. Y412MC52 1 221 1 609 Geobacillus genomosp. 3 1921421 0 species 1 504 Geobacillus subterraneus 129338 0 species 4 2527 species group 0 1505648 1462 0 species 1 244 Geobacillus kaustophilus 0 33938 species 239 1 Geobacillus thermocatenulatus Geobacillus thermoleovorans 898 1 species 0 33941 169283 0 species 1146 1 Geobacillus lituanicus 1 871 Geobacillus thermodenitrificans 33940 0 species Geobacillus stearothermophilus 1 583 species 0 1422 459532 0 genus 1 1 578 2 Terribacillus 577 1 Terribacillus aidingensis 586416 0 species genus 0 45667 2 1407 402384 0 species 1 625 Halobacillus mangrovi species 1570 0 Halobacillus halophilus 782 1 0 351195 6 1 genus 2 839 Salimicrobium 1230341 0 species 833 1 Salimicrobium jeotgali 1386 0 genus 1 1982 48216 58 Bacillus species 1413 0 Bacillus cellulosilyticus 1 398 Bacillus xiamenensis 424 1 species 0 1178537 Bacillus gibsonii 107 1 species 79881 0 species 79883 0 Bacillus horikoshii 644 1 no rank 185979 0 6736 19 0 1628753 species 1 149 Bacillus sp. LM 4-2 0 1446792 species 234 1 Bacillus sp. Pc3 1 271 Bacillus sp. 275 1941347 0 species Bacillus sp. YP1 219 1 species 0 1574141 species 563169 0 Bacillus sp. SJ-10 1 209 1570330 0 species 1 67 Bacillus sp. BH072 377 1 Bacillus sp. IHB B 7164 0 1827146 species 0 98228 species 1 694 Bacillus sp. OxB-1 species 0 2049935 Bacillus sp. Lzh-5 1 131 1 328 Bacillus sp. WP8 756828 0 species species 1837130 0 Bacillus sp. FJAT-14266 1 811 Bacillus sp. H15-1 575 1 species 0 1856406 species 666686 0 Bacillus sp. 1NLA3E 1 538 0 2026248 species 573 1 Bacillus sp. 1s-1 251 1 Bacillus sp. MD-5 2009331 0 species 0 1409 species 1 183 Bacillus sp. (in: Bacteria) Bacillus sp. X1(2014) 396 1 species 1565991 0 1 175 Bacillus sp. JS 1127744 0 species 1774743 0 species 555 1 Bacillus sp. SDLI1 species 0 1408 Bacillus pumilus 2291 1 species group 653685 0 9 10560 1 822 Bacillus licheniformis 1402 0 species species 0 72361 Bacillus vallismortis 1 98 3 3694 species subgroup 1938374 0 0 492670 species 1146 1 Bacillus velezensis species 659243 0 Bacillus siamensis 560 1 species 0 1390 Bacillus amyloliquefaciens 1988 1 species 0 119858 Bacillus sonorensis 1 719 1423 0 species 1 3395 Bacillus subtilis 1648923 0 species 1 1266 Bacillus paralicheniformis species 0 1452 Bacillus atrophaeus 566 1 0 33932 species 1 626 Bacillus cohnii species 0 1398 Bacillus coagulans 2242 1 species 0 324767 Bacillus infantis 936 1 86661 0 species group 13358 10 3 1154 no rank 0 2750818 Bacillus sp. ABP14 294 1 species 0 1892404 1 383 Bacillus sp. HBCD-sjtu 0 2053832 species 1 477 Bacillus sp. FDAARGOS_235 1839798 0 species Bacillus anthracis 349 1 species 0 1392 396 1 Bacillus bombysepticus 0 658666 species 1 1413 Bacillus mycoides 0 1405 species species 580165 0 Bacillus cytotoxicus 621 1 1396 0 species 1 5155 Bacillus cereus 155322 0 species 1 362 Bacillus toyonensis 3908 1 Bacillus thuringiensis 1428 0 species 1792192 0 species group 1 495 1 495 Bacillus altitudinis 0 293387 species 1 1018 Bacillus safensis 561879 0 species 632773 0 species 1 556 Bacillus beveridgei species 0 412384 Bacillus aryabhattai 1 612 species 0 1404 Bacillus megaterium 1767 1 species 1479 0 Bacillus smithii 493 1 Bacillus glycinifermentans 907 1 species 1664069 0 86664 0 species 1 326 Bacillus flexus 1547283 0 species 1 253 Bacillus weihaiensis 1471 0 species 1 480 Bacillus methanolicus 135735 0 species 1005 1 Bacillus endophyticus 2675229 0 genus 2 2490 Bacillus simplex 1 2078 species 1478 0 species 264697 0 Bacillus muralis 1 412 2681 6 Anoxybacillus 0 150247 7 1 genus 0 294699 species 496 1 Anoxybacillus amylolyticus 33934 0 species 1 701 Anoxybacillus flavithermus 2 967 2639704 0 no rank 0 1490052 species 1 495 Anoxybacillus sp. B2M1 1490057 0 species 472 1 Anoxybacillus sp. B7M1 species 0 198467 Anoxybacillus gonensis 510 1 genus 2675230 0 2 1115 1 746 Bacillus oceanisediminis 0 665099 species 369 1 Bacillus kochii 0 859143 species 2 639 Lentibacillus 175304 0 1 genus 1 0 1472767 species 638 1 Lentibacillus amyloliquefaciens 0 1055323 genus 1 659 1 659 Aeribacillus pallidus 0 33936 species Fictibacillus 3 6399 genus 1 6 1329200 0 0 255247 species 1 6085 Fictibacillus arsenicus Fictibacillus phosphorivorans 308 1 species 0 1221500 genus 1 2 182709 0 Oceanobacillus 1352 2 0 182710 species 1 1350 Oceanobacillus iheyensis 3941 5 2675234 0 genus Bacillus halodurans 1 1039 species 86665 0 954 1 Bacillus lehensis 300825 0 species species 79885 0 Bacillus pseudofirmus 536 1 species 79880 0 Bacillus clausii 776 1 species 199441 0 Bacillus krulwichiae 1 636 genus 1 38 400634 0 Lysinibacillus 5 4140 1145276 0 species 1 903 Lysinibacillus varians 2636778 0 no rank 1038 1 1038 1 Lysinibacillus sp. YS11 0 2072025 species 28031 0 species 684 1 Lysinibacillus fusiformis species 0 1421 Lysinibacillus sphaericus 1477 1 1 635 genus 1906945 0 1426 0 species 1 635 Parageobacillus thermoglucosidasius 742 1 genus 0 29331 species 1449 0 Amphibacillus xylanus 1 742 7 3569 Virgibacillus 84406 0 40 genus 1 2017483 0 species 1 786 Virgibacillus phasianinus species 0 1482 Virgibacillus halodenitrificans 621 1 Virgibacillus pantothenticus 1 387 species 0 1473 0 2620237 no rank 2 1289 Virgibacillus sp. SK37 1 569 species 0 403957 1 720 Virgibacillus sp. 6R 1911587 0 species 446 1 Virgibacillus necropolis 163877 0 species 0 539002 no rank 4553 9 764 2 no rank 539738 0 3 1 genus 0 1378 Gemella 764 2 2624949 0 no rank 1 761 Gemella sp. oral taxon 928 761 1 species 0 1785995 0 539742 no rank 7 3789 Exiguobacterium 3789 7 110 genus 1 33986 0 0 332410 species 384 1 Exiguobacterium sibiricum species 0 132920 Exiguobacterium antarcticum 1 747 4 2548 no rank 2644629 0 species 1849031 0 Exiguobacterium sp. U13-1 941 1 684 1 Exiguobacterium sp. ZWU0009 0 1224749 species Exiguobacterium sp. MH3 1 567 species 1399115 0 Exiguobacterium sp. AT1b 1 356 species 0 360911 Lactobacillales 186908 166 order 1 2356 186826 0 1 271 no rank 263855 0 271 1 Lactobacillales bacterium 1993866 0 species Lactobacillaceae 58 39393 1 family 383 0 33958 2767842 0 genus 3 2517 species 1589 0 Lactobacillus pentosus 1 1034 Lactobacillus plantarum 1 1201 species 0 1590 Lactobacillus paraplantarum 282 1 species 60520 0 14862 16 Lactobacillus 0 1578 694 1 genus Lactobacillus delbrueckii 1638 1 species 0 1584 1 894 Lactobacillus gallinarum 52242 0 species species 0 1587 Lactobacillus helveticus 1606 1 1248 1 Lactobacillus johnsonii 0 33959 species Lactobacillus kefiranofaciens 699 1 species 0 267818 308 1 Lactobacillus acetotolerans 0 1600 species no rank 0 2620435 2317 4 Lactobacillus sp. D1501 274 1 species 2108362 0 2099789 0 species 1 509 Lactobacillus sp. CBA3606 species 2099788 0 Lactobacillus sp. CBA3605 1 629 Lactobacillus sp. wkB8 905 1 species 0 1545702 109790 0 species 260 1 Lactobacillus jensenii Lactobacillus acidophilus 1 1294 species 1579 0 774 1 Lactobacillus gasseri 1596 0 species Lactobacillus amylovorus 2345 1 species 1604 0 Lactobacillus amylolyticus 1 785 species 83683 0 4 3424 genus 0 2767887 1624 0 species 788 1 Lactobacillus salivarius 1 384 Lactobacillus acidipiscis 89059 0 species 1601 0 species 497 1 Lactobacillus agilis Lactobacillus ruminis 1755 1 species 0 1623 genus 2767889 0 2 941 species 1610 0 Lactobacillus coryniformis 399 1 375175 0 species 542 1 Lactobacillus backii genus 2759736 0 3 2494 1582 0 species 1 991 Lactobacillus casei Lactobacillus paracasei 1 708 species 0 1597 795 1 Lactobacillus rhamnosus 47715 0 species genus 2742598 0 2291 3 1598 0 species 919 1 Lactobacillus reuteri species 0 1613 Lactobacillus fermentum 690 1 0 97478 species 1 682 Lactobacillus mucosae 0 2767892 genus 596 1 596 1 Lactobacillus paracollinoides 240427 0 species 739 2 2767885 0 genus species 1599 0 Lactobacillus sakei 370 1 0 28038 species 1 369 Lactobacillus curvatus genus 0 2767881 483 2 species 1625 0 Lactobacillus sanfranciscensis 337 1 53444 0 species 1 146 Lactobacillus lindneri genus 2767890 0 1 126 1 126 Lactobacillus hokkaidonensis 0 1193095 species 2767876 0 genus 1 687 species 0 1603 Lactobacillus amylophilus 687 1 2767893 0 genus 3192 3 species 0 1581 Lactobacillus buchneri 1 753 Lactobacillus curieae 1149 1 species 1138822 0 Lactobacillus parabuchneri 1 1290 species 152331 0 0 1253 1 genus 4 2428 6 Pediococcus species 0 51663 Pediococcus damnosus 446 1 304 1 1670797 0 species group 1254 0 species 1 304 Pediococcus acidilactici 1 1175 Pediococcus pentosaceus 0 1255 species species 0 187452 Pediococcus claussenii 1 196 303 1 Pediococcus inopinatus 114090 0 species genus 2767877 0 1 341 1 341 Lactobacillus kunkeei 148814 0 species 3 1317 2767886 0 genus Lactobacillus brevis 1 652 species 1580 0 266 1 Lactobacillus koreensis 0 637971 species species 0 267363 Lactobacillus zymae 1 399 6 2572 genus 2767879 0 1602 0 species 1 674 Lactobacillus alimentarius 518 1 Lactobacillus farciminis 0 1612 species Lactobacillus ginsenosidimutans 262 1 species 0 1007676 Lactobacillus crustorum 1 630 species 392416 0 0 1074467 species 300 1 Lactobacillus heilongjiangensis 1847728 0 species 1 188 Lactobacillus allii 5211 18 Leuconostocaceae 0 81850 1 family 5 Weissella 1694 6 6 1 genus 0 46255 0 165096 species 1 185 Weissella koreensis Weissella jogaejeotgali 212 1 species 0 1631871 Weissella cibaria 1 736 species 0 137591 398 1 Weissella ceti 759620 0 species Weissella paramesenteroides 1 157 species 1249 0 9 3024 Leuconostoc 0 1243 1 genus 26 Leuconostoc gelidum 311 1 species 1244 0 0 255248 species 1 121 Leuconostoc garlicum 136609 0 species 1 926 Leuconostoc kimchii 157 1 Leuconostoc citreum 33964 0 species 1246 0 species 1 95 Leuconostoc lactis species 0 1245 Leuconostoc mesenteroides 482 1 species 0 1252 Leuconostoc carnosum 1 147 759 1 no rank 0 2685106 species 979982 0 Leuconostoc sp. C2 1 759 46254 0 genus 1 5 488 2 Oenococcus 0 1247 species 1 483 Oenococcus oeni 4 family 1 186828 0 Carnobacteriaceae 11 2964 Marinilactibacillus 388 2 genus 1 3 191769 0 385 1 no rank 0 2632303 1 385 Marinilactibacillus sp. 15R 0 1911586 species 3 1003 Jeotgalibaca 1470540 0 genus 1 4 Jeotgalibaca dankookensis 243 1 species 708126 0 1 756 no rank 0 2621505 species 0 1903686 Jeotgalibaca sp. PTS2502 1 756 43 genus 1 2747 0 Carnobacterium 1569 5 Carnobacterium maltaromaticum 1 410 species 0 2751 1 268 Carnobacterium inhibens 147709 0 species 2 848 0 257487 no rank 1 327 Carnobacterium sp. CP1 0 1564681 species Carnobacterium sp. 17-4 1 521 species 208596 0 0 81852 121 1 family 20 20159 Enterococcaceae Vagococcus 3 690 1 genus 3 0 2737 1 270 Vagococcus penaei 0 633807 species 1 417 Vagococcus teuberi 0 519472 species 1 genus 534 0 1350 Enterococcus 12 15960 2608891 0 no rank 1159 3 Enterococcus sp. FDAARGOS_163 1 264 species 2060306 0 species 2057791 0 Enterococcus sp. CR-Ec1 292 1 species 0 2060307 Enterococcus sp. FDAARGOS_375 603 1 Enterococcus durans 1 1001 species 53345 0 species 0 1351 Enterococcus faecalis 1 3552 0 1354 species 1 978 Enterococcus hirae 0 37734 species 1 362 Enterococcus casseliflavus Enterococcus mundtii 1 1284 species 0 53346 1 542 Enterococcus thailandicus 417368 0 species species 0 1352 Enterococcus faecium 5838 1 0 2005703 species 1 710 Enterococcus wangshanyuanii Tetragenococcus 2 2634 1 genus 1 0 51668 1 2633 Tetragenococcus halophilus 51669 0 species Melissococcus 754 2 1 genus 1 0 33969 species 33970 0 Melissococcus plutonius 1 753 186827 0 3 family 1 4151 8 Aerococcaceae 80 genus 1 1375 0 Aerococcus 7 4148 1376 0 species 1 547 Aerococcus urinae 51665 0 species 642 1 Aerococcus urinaeequi 947 1 Aerococcus christensenii 87541 0 species species 0 128944 Aerococcus urinaehominis 735 1 Aerococcus viridans 530 1 species 1377 0 Aerococcus sanguinicola 667 1 species 119206 0 0 1300 1 family 943 49 112403 Streptococcaceae 5 3622 Lactococcus 0 1357 1 genus 7 0 1364 species 1 235 Lactococcus piscium 1 283 Lactococcus raffinolactis 1366 0 species 1 435 Lactococcus garvieae 0 1363 species species 1358 0 Lactococcus lactis 1 2662 1650 genus 1 1301 0 Streptococcus 43 107838 1184 1 Streptococcus acidominimus 0 1326 species Streptococcus suis 1 10296 species 1307 0 1216 1 Streptococcus thermophilus 1308 0 species 582 1 Streptococcus pluranimalium 82348 0 species 1 2039 Streptococcus pneumoniae 1313 0 species 0 1349 species 1 813 Streptococcus uberis species 0 1825069 Streptococcus marmotae 1 385 Streptococcus pyogenes 1 1465 species 0 1314 3045 1 Streptococcus infantarius 0 102684 species species 28037 0 Streptococcus mitis 1 3365 1 697 Streptococcus parauberis 0 1348 species 0 1309 species 1087 1 Streptococcus mutans species 0 1888195 Streptococcus himalayensis 641 1 species 0 315405 Streptococcus gallolyticus 1945 1 Streptococcus merionis 1 1206 species 0 400065 species 0 1335 Streptococcus equinus 727 1 1 433 Streptococcus iniae 0 1346 species 960 1 Streptococcus sanguinis 1305 0 species Streptococcus pantholopis 545 1 species 1811193 0 1318 0 species 1 2349 Streptococcus parasanguinis species 1302 0 Streptococcus gordonii 2080 1 species 0 45634 Streptococcus cristatus 1 877 12269 7 no rank 2608887 0 Streptococcus sp. I-G2 1 4107 species 0 1156431 Streptococcus sp. I-P16 1 3912 species 0 1156433 0 712633 species 554 1 Streptococcus sp. oral taxon 431 Streptococcus sp. NPS 308 502 1 species 0 1902136 0 1839799 species 948 1 Streptococcus sp. FDAARGOS_192 1 1971 Streptococcus sp. A12 0 1759399 species 275 1 Streptococcus sp. 'group B' 0 1319 species 2 1500 species group 0 119603 946 1 Streptococcus dysgalactiae 0 1334 species 0 1336 species 1 554 Streptococcus equi Streptococcus lutetiensis 1 2389 species 0 150055 1 3348 Streptococcus salivarius 0 1304 species Streptococcus halotolerans 771 1 species 0 1814128 1 3328 Streptococcus pasteurianus 197614 0 species 671232 0 species group 3 31952 0 76860 species 7170 1 Streptococcus constellatus species 1328 0 Streptococcus anginosus 1 23976 1338 0 species 806 1 Streptococcus intermedius 0 59310 species 261 1 Streptococcus macedonicus Streptococcus agalactiae 1 8590 species 1311 0 Streptococcus pseudopneumoniae 1 528 species 0 257758 0 1303 species 1 3315 Streptococcus oralis 1 class 1 526524 0 Erysipelotrichia 11 14444 1 order 10 0 526525 Erysipelotrichales 10 14443 74 1 family 0 128827 Erysipelotrichaceae 14433 9 0 1729679 1 genus 19 2 3931 Faecalibaculum 1702221 0 species 3912 1 Faecalibaculum rodentium 6 1 genus 0 191303 Turicibacter 2 2116 2110 1 no rank 2638206 0 Turicibacter sp. H121 1 2110 species 1712675 0 1 genus 34 0 1647 Erysipelothrix 3 1507 0 1648 species 507 1 Erysipelothrix rhusiopathiae 0 1514105 species 966 1 Erysipelothrix larvae 544447 0 no rank 6805 1 1834207 0 species 6805 1 Erysipelotrichaceae bacterium I46 no rank 0 33974 2 880 6 1 genus 0 1930845 Ndongobacter 880 2 1871025 0 species 1 874 Ndongobacter massiliensis 84086 0 no rank 1 736 endosymbiont 'TC1' of Trimyema compressum 1 736 species 0 243899 41 14818 200795 0 phylum 48 class 1 1382928 0 Ardenticatenia 5 2158 2110 4 Ardenticatenales 1382929 0 26 order 1 0 1382930 7 1 family 2084 3 Ardenticatenaceae Candidatus Promineofilum 2077 2 5 1 genus 0 1988031 1 2072 Candidatus Promineofilum breve 0 1806508 species 0 475962 class 4 1394 1394 4 Caldilineales 0 475963 4 1 order 4 1 family 0 475964 Caldilineaceae 1390 3 1386 2 Caldilinea 0 233191 1 genus 1 133453 0 species 1385 1 Caldilinea aerophila 292625 0 16 class 1 3061 6 Anaerolineae 3045 5 Anaerolineales 0 292629 1 order 4 0 292628 27 1 family 4 3041 Anaerolineaceae 1 336 genus 0 2019482 species 1986204 0 Brevefilum fermentans 1 336 1341 1 genus 233189 0 1341 1 Anaerolinea thermophila 0 167964 species 1 1337 no rank 1324991 0 Anaerolineaceae bacterium oral taxon 439 1 1337 species 0 1889813 181 class 1 301297 0 Dehalococcoidia 3811 7 order 0 1202465 2547 3 2 1 family 0 1202464 Dehalococcoidaceae 3 2547 2545 2 0 61434 genus 0 237581 no rank 921 1 species 1522671 0 Dehalococcoides sp. UCH007 921 1 1624 1 Dehalococcoides mccartyi 0 61435 species Dehalogenimonas 1083 3 4 1 genus 0 670486 552810 0 species 1 403 Dehalogenimonas lykanthroporepellens 0 1839801 species 676 1 Dehalogenimonas formicexedens 32061 0 class 1 31 11 3087 Chloroflexia 32064 0 order 1 17 10 3056 Chloroflexales 0 1508595 suborder 1509 4 8 family 1 1508635 0 Roseiflexaceae 1509 4 0 120961 6 1 genus 1501 3 Roseiflexus no rank 0 2609473 850 1 357808 0 species 850 1 Roseiflexus sp. RS-1 645 1 Roseiflexus castenholzii 0 120962 species 5 1530 suborder 1508594 0 5 1530 Chloroflexaceae 0 1106 1 1 family 4 1529 Chloroflexus 0 1107 23 1 genus 2 1088 Chloroflexus aurantiacus 0 1108 544 1 species 544 1 Chloroflexus sp. Y-400-fl 0 480224 strain 0 152260 species 1 418 Chloroflexus aggregans 1307 8 Thermomicrobia 0 189775 1 class 6 3 326 Thermomicrobiales 0 189776 2 1 order 324 2 Thermomicrobiaceae 189777 0 family 1 10 0 499 genus 1 314 500 0 species 1 314 Thermomicrobium roseum 4 975 0 85000 subclass 975 4 Sphaerobacterales 85001 0 order 1 17 suborder 0 255728 958 3 family 1 11 85002 0 Sphaerobacteraceae 3 958 Sphaerobacter 2 947 1 genus 9 0 2056 1 938 Sphaerobacter thermophilus 0 2057 species Actinobacteria 875895 644 90 phylum 1 201174 0 605990 589 Actinobacteria 0 1760 1 class 4451 19 14225 Actinomycetales 2037 0 order 1 6 1026 1 family 0 2049 Actinomycetaceae 14219 18 22 1 genus 0 2050 Mobiluncus 2 1593 species 0 2051 Mobiluncus curtisii 1571 1 Trueperella 2 1030 5 genus 1 1069494 0 Trueperella pyogenes 1 1025 species 0 1661 genus 0 2529408 1189 1 species 0 52773 Actinomyces meyeri 1189 1 0 28263 genus 1 541 species 28264 0 Arcanobacterium haemolyticum 541 1 524 2 Actinotignum 1653174 0 genus 1 2 species 59505 0 Actinotignum schaalii 1 522 1654 0 genus 1 203 9 8316 Actinomyces Actinomyces sp. VUL4_3 151 1 species 0 1912795 Actinomyces radicidentis 1 1418 species 0 111015 954 1 Actinomyces oris 0 544580 species 1960083 0 species 1 764 Actinomyces gaoshouyii 1616 1 Actinomyces pacaensis 0 1852377 species 3 3210 no rank 0 2609248 species 0 1851395 Actinomyces sp. Chiba101 889 1 Actinomyces sp. oral taxon 414 1 1304 species 712122 0 1017 1 Actinomyces sp. oral taxon 897 0 2081702 species 1 order 17 0 85013 Frankiales 4125 7 4108 6 Frankiaceae 74712 0 50 family 1 1 genus 42 0 1854 Frankia 5 4058 species 298654 0 Frankia inefficax 1119 1 species 0 1859 Frankia alni 1 1600 no rank 0 2632575 1 831 species 0 298653 Frankia sp. EAN1pec 831 1 1 466 Frankia casuarinae 0 106370 species 0 85004 202 1 order 26 214879 Bifidobacteriales family 1 8696 31953 0 Bifidobacteriaceae 25 214677 genus 196081 0 472 1 Scardovia inopinata 1 472 species 0 78259 Bifidobacterium 203248 19 1 genus 612 0 1678 638619 0 species 630 1 Bifidobacterium actinocoloniiforme 28025 0 species 1 1845 Bifidobacterium animalis species 216816 0 Bifidobacterium longum 122769 1 Bifidobacterium thermophilum 1 1746 species 0 33905 species 0 1689 Bifidobacterium dentium 2042 1 Bifidobacterium angulatum 3802 1 species 0 1683 species 0 35760 Bifidobacterium choerinum 950 1 Bifidobacterium adolescentis 6047 1 species 0 1680 1 1928 Bifidobacterium pseudolongum 1694 0 species Bifidobacterium scardovii 1 2248 species 158787 0 Bifidobacterium asteroides 1 1611 species 1684 0 species 0 1691 Bifidobacterium indicum 779 1 species 1687 0 Bifidobacterium coryneforme 1 681 1 16329 Bifidobacterium breve 1685 0 species 1681 0 species 11025 1 Bifidobacterium bifidum 0 1686 3049 1 species 9512 2 Bifidobacterium catenulatum subspecies 0 630129 Bifidobacterium kashiwanohense 6463 1 0 28026 species 18692 1 Bifidobacterium pseudocatenulatum 2 1120 Gardnerella 0 2701 1 genus 1 2702 0 species 1119 1 Gardnerella vaginalis 2 1141 Parascardovia 0 196082 1 1 genus 78258 0 species 1140 1 Parascardovia denticolens 107774 162 Corynebacteriales 0 85007 1106 1 order 85028 0 6 family 1 1626 4 Tsukamurellaceae 1620 3 Tsukamurella 2060 0 genus 1 213 Tsukamurella paurometabola 1 661 species 0 2061 0 57704 species 1 746 Tsukamurella tyrosinosolvens Nocardiaceae 24586 31 family 1 91 85025 0 Rhodococcus 15447 23 663 genus 1 1827 0 334542 0 species 1 484 Rhodococcus qingshengii Rhodococcus pyridinivorans 625 1 species 103816 0 Rhodococcus jostii 1 591 species 132919 0 species 37919 0 Rhodococcus opacus 1374 1 888 1 Rhodococcus fascians 1828 0 species 0 192944 no rank 12 6886 0 1564114 species 1074 1 Rhodococcus sp. B7740 488 1 Rhodococcus sp. YL-1 0 1045808 species 1570939 0 species 598 1 Rhodococcus sp. 2G species 1723645 0 Rhodococcus sp. 008 378 1 species 0 1807790 Rhodococcus sp. BH4 335 1 1805827 0 species 547 1 Rhodococcus sp. MTM3W5.2 0 1727214 species 1 550 Rhodococcus sp. H-CA8f species 0 1653478 Rhodococcus sp. PBTS 1 437 1 Rhodococcus sp. PBTS 2 569 1 species 1653479 0 679318 0 species 1 461 Rhodococcus sp. WMMA185 873 1 Rhodococcus sp. WB1 1033922 0 species 0 935199 species 1 576 Rhodococcus sp. p52 775 1 Rhodococcus ruber 1830 0 species 629 1 Rhodococcus rhodochrous 0 1829 species species 1833 0 Rhodococcus erythropolis 1 1142 species 43767 0 Rhodococcus hoagii 1 551 Rhodococcus aetherivorans 839 1 species 0 191292 0 1817 206 1 genus 9048 7 Nocardia species 0 135487 Nocardia cyriacigeorgica 1706 1 Nocardia brasiliensis 1855 1 species 37326 0 1715 1 Nocardia terpenica 0 455432 species Nocardia farcinica 1243 1 species 0 37329 Nocardia nova 1273 1 species 37330 0 species 37332 0 Nocardia seriolae 1 1050 Segniliparaceae 363 3 1 family 4 0 316606 1 genus 14 0 286801 Segniliparus 2 359 Segniliparus rotundus 345 1 species 0 286802 472 1 family 0 1653 Corynebacteriaceae 52 39226 Corynebacterium 38754 51 1123 1 genus 0 1716 species 161899 0 Corynebacterium singulare 713 1 401472 0 species 1 352 Corynebacterium ureicelerivorans [Brevibacterium] flavum 738 1 species 92706 0 1815 1 Corynebacterium crudilactis 0 1652495 species 35755 0 species 437 1 Corynebacterium kutscheri 351 1 Corynebacterium ammoniagenes 0 1697 species 1098 1 Corynebacterium deserti 1408191 0 species 432 1 Corynebacterium phocae 161895 0 species 1 514 Corynebacterium kroppenstedtii 0 161879 species Corynebacterium striatum 1354 1 species 0 43770 species 65058 0 Corynebacterium ulcerans 531 1 Corynebacterium glaucum 520 1 species 187491 0 Corynebacterium atypicum 1 412 species 0 191610 0 89154 species 862 1 Corynebacterium terpenotabidum Corynebacterium cystitidis 302 1 species 0 35757 Corynebacterium flavescens 1 434 species 0 28028 473 1 Corynebacterium argentoratense 42817 0 species species 1721 0 Corynebacterium callunae 843 1 571915 0 species 1 1056 Corynebacterium mustelae Corynebacterium aquilae 1 489 species 0 203263 species 169292 0 Corynebacterium aurimucosum 1 713 Corynebacterium falsenii 1 662 species 0 108486 486 1 Corynebacterium lactis 0 1231000 species 1121358 0 species 516 1 Corynebacterium doosanense Corynebacterium casei 1 686 species 0 160386 1770 2 no rank 0 2624378 1 1248 Corynebacterium sp. ATCC 6931 1487956 0 species species 0 702967 Corynebacterium sp. NML98-0116 522 1 species 0 1404244 Corynebacterium glyciniphilum 889 1 species 0 136857 Corynebacterium testudinoris 1 561 1050174 0 species 371 1 Corynebacterium epidermidicanis species 1727 0 Corynebacterium variabile 625 1 species 1223514 0 Corynebacterium humireducens 622 1 Corynebacterium jeikeium 1906 1 species 0 38289 Corynebacterium halotolerans 746 1 species 0 225326 Corynebacterium glutamicum 1153 1 species 1718 0 species 0 1719 Corynebacterium pseudotuberculosis 1 613 species 38305 0 Corynebacterium vitaeruminis 1037 1 Corynebacterium urealyticum 629 1 species 43771 0 519 1 Corynebacterium uterequi 0 1072256 species 0 1705 species 1 1393 Corynebacterium stationis 1230998 0 species 1 740 Corynebacterium frankenforstense species 349751 0 Corynebacterium marinum 671 1 Corynebacterium sphenisci 1 826 species 0 191493 species 258224 0 Corynebacterium resistens 1 370 527 1 Corynebacterium camporealensis 161896 0 species 1 566 Corynebacterium efficiens 152794 0 species 0 575200 species 1525 1 Corynebacterium maris 1717 0 species 1092 1 Corynebacterium diphtheriae 739 1 Corynebacterium simulans 0 146827 species 156978 0 species 1 952 Corynebacterium imitans family 1 129 85026 0 Gordoniaceae 9 5799 2053 0 genus 1 101 8 5670 Gordonia species 0 2054 Gordonia bronchialis 1 660 659 1 Gordonia phthalatica 1136941 0 species no rank 0 2657482 1736 2 509 1 Gordonia sp. YC-JH1 2059875 0 species Gordonia sp. KTR9 1227 1 species 337191 0 Gordonia polyisoprenivorans 993 1 species 0 84595 1004901 0 species 1 620 Gordonia iterans Gordonia terrae 1 901 species 2055 0 56 33696 Mycobacteriaceae 1762 0 133 family 1 20322 34 Mycobacterium 1763 0 genus 1 1454 species 0 1809 Mycobacterium ulcerans 598 1 species 29311 0 Mycobacterium haemophilum 1 973 0 1781 species 1 785 Mycobacterium marinum species 482462 0 Mycobacterium dioxanotrophicus 1 1461 0 261524 species 1 977 Mycobacterium liflandii 13 7527 no rank 2642494 0 species 0 164757 Mycobacterium sp. JLS 393 1 0 2051552 species 590 1 Mycobacterium sp. PYR15 species 1561223 0 Mycobacterium sp. QIA-37 1 251 species 0 1879023 Mycobacterium sp. djl-10 974 1 Mycobacterium sp. MCS 387 1 species 0 164756 species 1545728 0 Mycobacterium sp. EPa45 666 1 1920667 0 species 1 528 Mycobacterium sp. WY10 1 220 Mycobacterium sp. MOTT36Y 1168287 0 species 397 1 Mycobacterium sp. KMS 189918 0 species 1 556 Mycobacterium sp. VKM Ac-1817D 0 1273687 species 1 1293 Mycobacterium sp. JS623 212767 0 species species 0 1570328 Mycobacterium sp. NRRL B-3805 497 1 species 0 1682113 Mycobacterium sp. YC-RL4 775 1 416 1 Mycobacterium leprae 1769 0 species Mycobacterium kansasii 611 1 species 0 1768 3542 8 species group 0 120793 species 0 339268 Mycobacterium colombiense 781 1 701042 0 species 490 1 Mycobacterium marseillense species 0 1764 Mycobacterium avium 1169 1 species 1138383 0 Mycobacterium paraintracellulare 1 182 0 1767 1 species 222 4 920 Mycobacterium intracellulare 1 341 Mycobacterium chimaera 0 222805 subspecies Mycobacterium indicus pranii 136 1 subspecies 35617 0 Mycobacterium yongonense 221 1 subspecies 0 1203599 1 689 0 2249310 species group 1 689 Mycobacterium shigaense 722731 0 species 0 77643 species group 1289 4 Mycobacterium canettii 335 1 species 78331 0 3 954 Mycobacterium tuberculosis 0 1773 380 1 species biotype 1765 0 Mycobacterium bovis 1 295 0 33894 biotype 1 279 Mycobacterium africanum 670516 0 genus 2536 5 species 0 1774 Mycobacterium chelonae 1 265 599 1 Mycobacterium stephanolepidis 1520670 0 species 928 1 Mycobacterium abscessus 0 36809 species Mycobacterium immunogenum 1 363 species 0 83262 0 1578165 species 1 381 Mycobacterium saopaulense 697025 0 genus 1 232 Hoyosella subflava 1 232 species 639313 0 1073531 0 genus 1067 2 Mycobacterium sinense 394 1 species 0 875328 673 1 Mycobacterium terrae 0 1788 species 9406 13 genus 0 1866885 Mycobacterium vaccae 910 1 species 1810 0 0 1800 species 579 1 Mycobacterium chubuense Mycobacterium gilvum 1 1018 species 1804 0 0 1772 species 940 1 Mycobacterium smegmatis 700 1 Mycobacterium goodii 134601 0 species 0 1771 species 892 1 Mycobacterium phlei Mycobacterium aurum 1 756 species 0 1791 1 497 Mycobacterium neoaurum 0 1795 species 1797 0 species 635 1 Mycobacterium thermoresistibile Mycobacterium fortuitum 810 1 species 0 1766 682 1 Mycobacterium vanbaalenii 0 110539 species 1 412 Mycobacterium rhodesiae 36814 0 species Mycobacterium litorale 1 575 species 758802 0 2 305 no rank 0 697024 1 genus 18 0 1847725 Lawsonella 305 2 1528099 0 species 287 1 Lawsonella clevelandensis 1 family 4 0 85029 Dietziaceae 4 1067 1063 3 Dietzia 37914 0 genus 1 11 0 499555 species 1 300 Dietzia timorensis 2617939 0 no rank 752 1 752 1 Dietzia sp. oral taxon 368 0 712270 species 941 3 order 85014 0 0 85034 1 family 11 3 941 Glycomycetaceae 0 283810 1 genus 18 2 930 Stackebrandtia Stackebrandtia nassauensis 1 912 species 283811 0 1 order 9 0 1643682 Geodermatophilales 3105 8 1 family 72 0 85030 Geodermatophilaceae 3096 7 2 775 Blastococcus 0 38501 1 genus 6 0 138336 species 769 1 Blastococcus saxobsidens 11 genus 1 1860 0 Geodermatophilus 1081 2 1070 1 Geodermatophilus obscurus 1861 0 species 2 1168 Modestobacter 0 88138 1 genus 43 0 477641 species 1 1125 Modestobacter marinus Streptomycetales 82 97463 order 1 208 85011 0 732 1 family 0 2062 Streptomycetaceae 81 97255 Kitasatospora 5 6111 73 genus 1 2063 0 no rank 0 2633591 1 1961 species 0 2018025 Kitasatospora sp. MMS16-BH015 1 1961 0 68173 species 1 944 Kitasatospora albolonga 0 1894 species 1537 1 Kitasatospora aureofaciens species 2066 0 Kitasatospora setae 1 1596 2934 genus 1 1883 0 Streptomyces 75 90412 68202 0 species 1 808 Streptomyces fulvissimus 1 931 Streptomyces peucetius 1950 0 species species 1169025 0 Streptomyces pratensis 946 1 Streptomyces cyaneogriseus 1 1128 species 68192 0 1 913 Streptomyces sp. XZHG99 0 2049881 species 1552 1 Streptomyces avermitilis 33903 0 species species 0 1355015 Streptomyces pluripotens 1609 1 Streptomyces albus 1809 1 species 1888 0 species 54571 0 Streptomyces venezuelae 1719 1 1889 0 species 1 944 Streptomyces ambofaciens species 0 1935 Streptomyces violaceoruber 1 645 1325 1 Streptomyces lincolnensis 1915 0 species 1 1058 Streptomyces lividans 1916 0 species 68249 0 species 1 2094 Streptomyces pactum species 553510 0 Streptomyces gilvosporeus 1352 1 Streptomyces vietnamensis 1080 1 species 0 362257 species 1940 0 Streptomyces albireticuli 1429 1 Streptomyces puniciscabiei 1275 1 species 0 164348 2 2054 species group 1477431 0 Streptomyces sampsonii 1076 1 species 0 42239 1 978 Streptomyces coelicolor 0 1902 species Streptomyces griseochromogenes 1 1669 species 68214 0 146923 0 species 1 969 Streptomyces parvulus 1 2772 Streptomyces lydicus 47763 0 species Streptomyces leeuwenhoekii 1095 1 species 1437453 0 species 0 1616117 Streptomyces formicae 1172 1 1901 0 species 1 824 Streptomyces clavuligerus 1 1153 Streptomyces reticuli 0 1926 species 92644 0 species 1997 1 Streptomyces malaysiensis species 0 67267 Streptomyces alboflavus 1 1096 0 408015 species 1041 1 Streptomyces xiamenensis species 1969 0 Streptomyces chartreusis 1 1384 Streptomyces niveus 704 1 species 0 193462 species 1907 0 Streptomyces glaucescens 1 760 1 1207 Streptomyces alfalfae 0 1642299 species Streptomyces sp. S10(2016) 1 868 species 1783515 0 Streptomyces collinus 1 857 species 0 42684 0 68280 species 1 2230 Streptomyces violaceusniger Streptomyces autolyticus 1 1870 species 0 75293 Streptomyces lavendulae 1 799 species 0 1914 1912 0 species 2297 1 Streptomyces hygroscopicus species 0 68570 Streptomyces albulus 1 1103 Streptomyces rubrolavendulae 722 1 species 285473 0 Streptomyces scabiei 1 1221 species 0 1930 1 1630 Streptomyces bingchenggensis 379067 0 species species 1971 0 Streptomyces noursei 1 1086 0 1038928 species 1 1112 Streptomyces xinghaiensis species group 629295 0 1551 2 1482558 0 species subgroup 698 1 1908 0 species 1 698 Streptomyces globisporus 0 1482596 species subgroup 1 853 853 1 Streptomyces griseus 1911 0 species 1236 1 Streptomyces cattleya 0 29303 species species 38300 0 Streptomyces pristinaespiralis 956 1 24 25426 0 2593676 no rank 1 1011 Streptomyces sp. fd1-xmd 0 1812480 species species 1972846 0 Streptomyces sp. Sge12 1 783 641 1 Streptomyces sp. WAC00288 2094021 0 species 1725411 0 species 1 1318 Streptomyces sp. CdTB01 Streptomyces sp. Tue 6075 699 1 species 0 1661694 2037 1 Streptomyces sp. M56 0 1495638 species species 1837283 0 Streptomyces sp. S8 618 1 Streptomyces sp. 769 1223 1 species 0 1262452 0 1649184 species 1 980 Streptomyces sp. CFMR 7 Streptomyces sp. 3211 885 1 species 0 1964449 species 1849967 0 Streptomyces sp. SAT1 884 1 1265601 0 species 1 1189 Streptomyces sp. PAMC 26508 1 913 Streptomyces sp. CLI2509 0 1984801 species species 0 206662 Streptomyces sp. FR-008 841 1 species 0 1561022 Streptomyces sp. CCM_MD2014 1 948 2059884 0 species 1 1667 Streptomyces sp. CMB-StM0423 234612 0 species 862 1 Streptomyces sp. TN58 1078 1 Streptomyces sp. P3 0 2135430 species Streptomyces sp. 4F 1 905 species 1751294 0 species 0 1961713 Streptomyces sp. MOE7 1 1071 Streptomyces sp. SirexAA-E 1446 1 species 862751 0 species 0 1841249 Streptomyces sp. RTd22 1 1658 Streptomyces sp. Mg1 819 1 species 465541 0 1 950 Streptomyces sp. CNQ-509 444103 0 species no rank 1643818 0 660 2 147067 0 2 genus 1 660 2 Thermobispora 1 658 Thermobispora bispora 2006 0 species 3 954 order 1643684 0 3 954 Nakamurellaceae 0 85031 22 1 family 2 genus 1 53460 0 Nakamurella 2 932 53461 0 species 930 1 Nakamurella multipartita 2039638 0 4 order 1 12 2903 Candidatus Nanopelagicales 2162846 0 family 11 2899 2476 7 Candidatus Planktophila 0 622681 1 genus 21 0 573600 species 1 356 Candidatus Planktophila limnetica 1 140 Candidatus Planktophila dulcis 0 1884914 species species 1884905 0 Candidatus Planktophila versatilis 519 1 Candidatus Planktophila sulfonica 218 1 species 0 1884904 species 0 1884907 Candidatus Planktophila vernalis 430 1 0 1884913 species 792 1 Candidatus Planktophila lacus 1 genus 3 0 2039639 Candidatus Nanopelagicus 423 4 species 0 1884915 Candidatus Nanopelagicus hibericus 323 1 species 0 1884916 Candidatus Nanopelagicus abundans 57 1 species 0 1884634 Candidatus Nanopelagicus limnes 1 40 291 3 0 1643683 order 13 1 family 0 85032 Acidothermaceae 291 3 2 278 Acidothermus 28048 0 7 genus 1 271 1 Acidothermus cellulolyticus 0 28049 species 43 1 order 0 85008 Micromonosporales 19 17092 Micromonosporaceae 18 17049 343 1 family 0 28056 135 genus 1 1865 0 Actinoplanes 7613 6 Actinoplanes missouriensis 1 1613 species 0 1866 Actinoplanes friuliensis 1394 1 species 0 196914 2626549 0 no rank 3 4471 Actinoplanes sp. SE50 1 1407 species 0 2033844 species 0 649831 Actinoplanes sp. N902-109 1658 1 Actinoplanes sp. SE50/110 1 1406 species 0 134676 Micromonospora 3852 4 genus 1 91 1873 0 species 0 47850 Micromonospora aurantiaca 1454 1 1 1302 0 2617518 no rank 0 648999 species 1 1302 Micromonospora sp. L5 Verrucosispora maris 1 1005 species 1003110 0 3499 4 Plantactinospora 0 673534 1 genus 87 3 3412 no rank 0 2631981 species 2108470 0 Plantactinospora sp. BC1 1 978 species 0 2071627 Plantactinospora sp. BB1 1 1302 1 1132 Plantactinospora sp. KBS50 0 2024580 species 9 genus 1 168694 0 Salinispora 1742 3 Salinispora arenicola 904 1 species 0 168697 1 829 Salinispora tropica 168695 0 species 622450 0 order 3 725 7 1 family 0 622451 Actinopolysporaceae 3 725 66 1 genus 0 1849 Actinopolyspora 718 2 414996 0 species 1 652 Actinopolyspora erythraea 51 1 order 0 85012 Streptosporangiales 10217 15 1598 3 Thermomonosporaceae 2012 0 family 1 10 Thermomonospora 2 1588 genus 1 33 2019 0 0 2020 species 1 1555 Thermomonospora curvata 1 family 36 0 83676 Nocardiopsaceae 4211 6 genus 83677 0 1 745 Thermobifida fusca 745 1 species 2021 0 genus 1 58 2013 0 Nocardiopsis 4 3430 species 53437 0 Nocardiopsis alba 1 991 1 1402 Nocardiopsis dassonvillei 0 2014 species Nocardiopsis gilva 1 979 species 280236 0 2004 0 69 family 1 4357 5 Streptosporangiaceae 2 1969 Streptosporangium 2000 0 genus 1 98 Streptosporangium roseum 1 1871 species 2001 0 Nonomuraea 2 2319 22 1 genus 0 83681 2297 1 no rank 0 2593643 1 2297 Nonomuraea sp. ATCC 55076 0 1909395 species Pseudonocardiales 31069 41 1 order 43 0 85010 Pseudonocardiaceae 40 31026 495 family 1 2070 0 1 genus 1 0 43356 Kutzneria 1694 2 Kutzneria albida 1693 1 species 0 43357 1835 0 35 genus 1 2 1205 Saccharopolyspora 1836 0 species 1 1170 Saccharopolyspora erythraea 1201 1 0 165301 genus 1586287 0 species 1 1201 Lentzea guizhouensis 1851 0 1 genus 1 357 2 Saccharomonospora 356 1 Saccharomonospora viridis 0 1852 species genus 1 265 1813 0 Amycolatopsis 7838 7 Amycolatopsis methanolica 865 1 species 0 1814 2 2099 no rank 2618356 0 1896961 0 species 1161 1 Amycolatopsis sp. AA4 1 938 Amycolatopsis sp. BJA-103 1911175 0 species species 0 31958 Amycolatopsis orientalis 1897 1 0 208439 species 1 1350 Amycolatopsis japonica 1362 1 Amycolatopsis mediterranei 0 33910 species Pseudonocardia 5676 8 92 genus 1 1847 0 240495 0 species 1 784 Pseudonocardia dioxanivorans no rank 0 2619320 4800 6 0 1688404 species 1 800 Pseudonocardia sp. EC080610-09 species 0 445576 Pseudonocardia sp. AL041005-10 1073 1 species 1096856 0 Pseudonocardia sp. EC080619-01 1 819 769 1 Pseudonocardia sp. HH130630-07 0 1690815 species 1 722 Pseudonocardia sp. EC080625-04 1096868 0 species 0 1641402 species 617 1 Pseudonocardia sp. HH130629-09 8 1 genus 0 674734 Alloactinosynnema 1106 2 2636053 0 no rank 1 1098 species 0 1653480 Alloactinosynnema sp. L-07 1098 1 142577 0 genus 1 12 680 2 Prauserella 0 530584 species 668 1 Prauserella marina 2029 0 5 genus 1 2 1532 Kibdelosporangium 1 1527 Kibdelosporangium phytohabitans 860235 0 species 3 3809 Actinosynnema 40566 0 genus 1 30 1937 1 Actinosynnema pretiosum 0 42197 species 0 40567 species 1842 1 Actinosynnema mirum 1 genus 1 0 2071 Saccharothrix 2 1263 species 103731 0 Saccharothrix espanaensis 1 1262 Actinoalloteichus 4170 6 66 genus 1 65496 0 938 1 Actinoalloteichus hoggarensis 0 1470176 species species 0 1612552 Actinoalloteichus sp. ADI127-7 1 712 no rank 0 2644606 1910 2 1612551 0 species 1 701 Actinoalloteichus sp. GBA129-24 Actinoalloteichus sp. AHMU CJ021 1 1209 species 0 2072503 340345 0 species 544 1 Actinoalloteichus hymeniacidonis 85009 0 order 1 187 33 19207 Propionibacteriales 13380 19 Propionibacteriaceae 0 31957 150 1 family 2667 4 Cutibacterium 1912216 0 8 genus 1 Cutibacterium granulosum 786 1 species 33011 0 species 0 33010 Cutibacterium avidum 1025 1 1747 0 species 848 1 Cutibacterium acnes 5 3114 Tessaracoccus 72763 0 genus 1 10 Tessaracoccus flavescens 706 1 species 399497 0 1332264 0 species 1 894 Tessaracoccus aquimaris Tessaracoccus flavus 1 733 species 1610493 0 771 1 2635419 0 no rank 1 771 Tessaracoccus sp. T2.5-30 1909732 0 species 3 2839 Propionibacterium 1743 0 genus 1 79 1 452 no rank 0 2608905 0 671223 species 452 1 Propionibacterium sp. oral taxon 193 Propionibacterium freudenreichii 2308 1 species 0 1744 1447 1 0 203133 genus no rank 0 2633994 1447 1 1447 1 Propionimicrobium sp. Marseille-P3275 0 1871034 species 0 2801844 genus 601 1 0 1750 species 1 601 Pseudopropionibacterium propionicum 11 1 genus 0 29404 Microlunatus 2 1154 Microlunatus phosphovorus 1143 1 species 0 29405 7 1 genus 0 1912215 Acidipropionibacterium 2 1408 1748 0 species 1 1401 Acidipropionibacterium acidipropionici 108 family 1 85015 0 Nocardioidaceae 5640 13 0 116071 27 1 genus 702 2 Micropruina species 75385 0 Micropruina glycogenica 675 1 Nocardioides 2423 4 genus 1 32 1839 0 no rank 0 2615069 834 1 species 196162 0 Nocardioides sp. JS614 1 834 0 2045452 species 686 1 Nocardioides sp. 78 0 450734 species 1 871 Nocardioides dokdonensis Pimelobacter 861 2 genus 1 6 2044 0 0 2045 species 855 1 Pimelobacter simplex 2040 0 6 genus 1 2 691 Aeromicrobium species 0 2041 Aeromicrobium erythreum 1 685 10 1 genus 0 182639 Kribbella 855 2 0 182640 species 1 845 Kribbella flavida 4 order 1 622452 0 Kineosporiales 4 1060 39 family 1 83778 0 Kineosporiaceae 3 1056 0 33981 9 1 genus 1017 2 Kineococcus species 0 131568 Kineococcus radiotolerans 1008 1 0 52018 no rank 390 1 1 390 Actinobacteria bacterium IMCC26256 1650658 0 species 1 order 1264 0 85006 Micrococcales 141 72552 2 619 125316 0 family 2 619 Beutenbergia 0 84756 4 1 genus species 0 84757 Beutenbergia cavernae 1 615 85023 0 family 1 295 21313 47 Microbacteriaceae 0 518733 5 1 genus 2 638 Microterricola 0 412690 species 633 1 Microterricola viridarii 14 8106 Microbacterium 0 33882 1 genus 118 0 2033 species 1 545 Microbacterium testaceum Microbacterium hominis 671 1 species 0 162426 Microbacterium chocolatum 338 1 species 84292 0 0 2609290 no rank 5315 8 Microbacterium sp. No. 7 1091 1 species 1714373 0 species 1906742 0 Microbacterium sp. BH-3-3-3 650 1 species 1696072 0 Microbacterium sp. CGR1 463 1 2103230 0 species 1 607 Microbacterium sp. str. 'China' Microbacterium sp. 1.5R 1 619 species 0 1916917 Microbacterium sp. TPU 3598 435 1 species 1938334 0 Microbacterium sp. XT11 1 630 species 367477 0 species 0 1795053 Microbacterium sp. PAMC 28756 820 1 1 567 Microbacterium paludicola 300019 0 species 36805 0 species 552 1 Microbacterium aurum Rathayibacter 924 3 genus 1 3 33886 0 species 33888 0 Rathayibacter tritici 563 1 Rathayibacter toxicus 1 358 species 145458 0 genus 0 1705353 440 1 1 440 Aurantimicrobium minutum 0 708131 species 2034 0 genus 1 95 4 1929 Curtobacterium no rank 0 257496 1160 2 species 1905847 0 Curtobacterium sp. BH-2-1-1 1 528 632 1 Curtobacterium sp. MR_MD2014 1561023 0 species species 0 69373 Curtobacterium pusillum 1 674 Leifsonia 2 1619 1 genus 83 0 110932 1536 1 Leifsonia xyli 1575 0 species Clavibacter 2485 6 164 1 genus 0 1573 28447 0 559 species 1 2321 5 Clavibacter michiganensis subspecies 33014 0 Clavibacter insidiosus 313 1 Clavibacter capsici 1 474 subspecies 1874630 0 31964 0 subspecies 1 564 Clavibacter sepedonicus 411 1 Clavibacter nebraskensis 0 31963 subspecies genus 1 1 337004 0 Microcella 497 2 species 279828 0 Microcella alkaliphila 1 496 1 250 0 1434032 genus 250 1 Pontimonas salivibrio 0 1159327 species genus 447237 0 698 1 no rank 0 2626248 698 1 species 1795630 0 Frondihabitans sp. PAMC 28766 1 698 Cryobacterium 3 1990 11 1 genus 0 69578 species 670052 0 Cryobacterium arcticum 963 1 1016 1 no rank 0 2649013 0 1978566 species 1 1016 Cryobacterium sp. LW097 no rank 0 1655488 3 214 3 214 1655489 0 clade 214 3 Rhodoluna 0 529883 1 genus 2 Candidatus Rhodoluna planktonica 1 133 species 0 535712 529884 0 species 79 1 Rhodoluna lacicola 0 33877 3 1 genus 2 716 Agromyces 1 713 Agromyces aureus 453304 0 species 1 genus 2 0 1759331 Cnuibacter 512 2 510 1 Cnuibacter physcomitrellae 0 1619308 species 36 1 family 0 85016 Cellulomonadaceae 2782 6 28 genus 1 1707 0 Cellulomonas 5 2746 1 556 Cellulomonas flavigena 1711 0 species 850 1 Cellulomonas gilvus 11 0 species 1 686 0 2620175 no rank 0 2003551 species 1 686 Cellulomonas sp. PSBB021 species 0 1708 Cellulomonas fimi 626 1 11 1 family 0 145357 Dermacoccaceae 7 1848 2 723 Dermacoccus 0 57495 2 1 genus Dermacoccus nishinomiyaensis 1 721 species 1274 0 Kytococcus 2 556 20 1 genus 0 57499 species 1276 0 Kytococcus sedentarius 1 536 Luteipulveratus 2 558 1 genus 9 0 745364 species 0 571913 Luteipulveratus mongoliensis 549 1 2 506 0 85022 family 2 506 Jonesia 43673 0 genus 1 27 43674 0 species 1 479 Jonesia denitrificans 2899 9 Intrasporangiaceae 0 85021 1 family 26 267408 0 14 genus 1 2 883 Arsenicicoccus no rank 0 2663846 869 1 species 0 1658671 Arsenicicoccus sp. oral taxon 190 1 869 0 53457 2 1 genus 2 609 Janibacter 1 607 Janibacter indicus 0 857417 species 2 964 Serinicoccus 265976 0 genus 1 60 1 904 Serinicoccus sp. JLT9 0 1758689 species 417 2 Intrasporangium 0 53357 4 1 genus 1 413 Intrasporangium calvum 0 53358 species 0 577468 no rank 1 357 genus 2038 0 1 357 species 2039 0 Tropheryma whipplei 1 357 Dermabacteraceae 5323 10 family 1 21 85020 0 6 4431 Brachybacterium 43668 0 86 genus 1 Brachybacterium ginsengisoli 1 1045 species 1331682 0 species 0 2017485 Brachybacterium sp. VR2415 878 1 species 2017484 0 Brachybacterium sp. VM2412 1031 1 593 1 no rank 0 2623841 0 1903186 species 593 1 Brachybacterium sp. P6-10-X1 species 43669 0 Brachybacterium faecium 798 1 472568 0 genus 353 1 472569 0 species 353 1 Devriesea agamarum 0 36739 1 genus 2 2 518 Dermabacter Dermabacter vaginalis 1 516 species 0 1630135 0 1268 1852 1 family 39 28856 Micrococcaceae 1 303 1645 0 genus 1 303 Renibacterium salmoninarum 1646 0 species 15 genus 1 1269 0 Micrococcus 762 2 747 1 Micrococcus luteus 1270 0 species 0 32207 8 1 genus 3233 3 Rothia 43675 0 species 2639 1 Rothia mucilaginosa Rothia dentocariosa 586 1 species 0 2047 2713 4 Pseudarthrobacter 0 1742993 14 1 genus Pseudarthrobacter phenanthrenivorans 1 696 species 0 361575 species 121292 0 Pseudarthrobacter sulfonivorans 875 1 1 1128 Pseudarthrobacter chlorophenolicus 0 85085 species 0 57493 1 genus 94 2626 4 Kocuria Kocuria palustris 1 705 species 71999 0 species 72000 0 Kocuria rhizophila 1 958 Kocuria flava 1 869 species 446860 0 Arthrobacter 13063 15 220 genus 1 1663 0 species 0 656366 Arthrobacter alpinus 1 1889 Arthrobacter crystallopoietes 1038 1 species 37928 0 12 9916 no rank 0 235627 0 2079227 species 1 583 Arthrobacter sp. PGP41 0 1357915 species 1 978 Arthrobacter sp. QXT-31 785 1 Arthrobacter sp. U41 0 1849032 species 1 493 Arthrobacter sp. ZXY-2 0 1806905 species Arthrobacter sp. Rue61a 859 1 species 1118963 0 Arthrobacter sp. YC-RL1 1 1343 species 1652545 0 Arthrobacter sp. FB24 1 969 species 290399 0 species 0 1704044 Arthrobacter sp. ERGS1:01 1 899 Arthrobacter sp. LS16 1 1176 species 1690248 0 species 1494608 0 Arthrobacter sp. PAMC 25486 700 1 0 2020486 species 1 591 Arthrobacter sp. YN species 0 1771959 Arthrobacter sp. ATCC 21022 1 540 genus 0 2078575 1 613 Arthrobacter sp. IHBB 11108 1 613 species 1618207 0 36 genus 1 1868332 0 Neomicrococcus 544 2 0 556325 species 1 508 Neomicrococcus aestuarii 596707 0 2 genus 1 2 735 Sinomonas species 37927 0 Sinomonas atrocyanea 733 1 Paenarthrobacter 453 2 1 genus 2 0 1742992 43663 0 species 451 1 Paenarthrobacter aurescens 1742989 0 1 genus 1 2 1959 Glutamicibacter Glutamicibacter arilaitensis 1 1958 species 256701 0 Dermatophilaceae 2 645 1 family 11 0 85018 1 634 genus 1862 0 Dermatophilus congolensis 634 1 species 1863 0 0 85017 1 family 40 9 4461 Promicromonosporaceae 58 1 genus 0 254250 Isoptericola 1390 3 561 1 Isoptericola dokdonensis 372663 0 species 1 771 Isoptericola variabilis 0 139208 species 2 1419 Xylanimonas 0 186188 6 1 genus 0 186189 species 1 1413 Xylanimonas cellulosilytica 1612 3 Cellulosimicrobium 0 157920 4 1 genus no rank 2624466 0 870 1 870 1 Cellulosimicrobium sp. TH-20 1980001 0 species species 1710 0 Cellulosimicrobium cellulans 738 1 3 634 Sanguibacteraceae 145360 0 5 family 1 2 629 Sanguibacter 0 60919 1 genus 12 0 60920 species 617 1 Sanguibacter keddieii 1045 3 Brevibacteriaceae 85019 0 4 family 1 0 1696 4 1 genus 2 1041 Brevibacterium species 1703 0 Brevibacterium linens 1037 1 Catenulisporales 4 1907 1 order 6 0 414714 0 414877 1 family 9 3 1901 Catenulisporaceae 414878 0 genus 1 14 1892 2 Catenulispora 0 304895 species 1 1878 Catenulispora acidiphila 1 class 4 0 84992 Acidimicrobiia 1554 7 Acidimicrobiales 1550 6 19 order 1 84993 0 84994 0 family 1 23 3 168 Acidimicrobiaceae 145 2 Acidimicrobium 0 53634 3 1 genus species 0 53635 Acidimicrobium ferrooxidans 142 1 0 2448023 family 1363 2 1 genus 6 0 682522 Ilumatobacter 1363 2 467094 0 species 1 1357 Ilumatobacter coccineus no rank 1752188 0 4 863 Actinobacteria bacterium IMCC26103 1 100 species 0 1848756 Actinobacteria bacterium IMCC19121 1 318 species 0 1848754 species 0 1848255 Actinobacteria bacterium IMCC25003 1 362 83 1 Actinobacteria bacterium IMCC26077 1848755 0 species 1497346 0 class 1 5 5 1604 Thermoleophilia Solirubrobacterales 1599 4 25 order 1 588673 0 0 320583 1 family 11 1574 3 Conexibacteraceae 191494 0 14 genus 1 2 1563 Conexibacter Conexibacter woesei 1 1549 species 191495 0 84995 0 class 1 25 6 1455 Rubrobacteria 84996 0 11 order 1 1430 5 Rubrobacterales 1419 4 Rubrobacteraceae 84997 0 3 family 1 1416 3 Rubrobacter 42255 0 16 genus 1 1 438 Rubrobacter radiotolerans 0 42256 species Rubrobacter xylanophilus 1 962 species 49319 0 Coriobacteriia 264339 32 729 class 1 84998 0 order 1 252 84999 0 Coriobacteriales 14 223809 0 84107 1 family 1334 6 209785 Coriobacteriaceae 2563 1 84113 0 no rank 2563 1 Coriobacteriaceae bacterium 68-1-3 1531429 0 species 1 genus 5 0 33870 Coriobacterium 2 1684 Coriobacterium glomerans 1 1679 species 0 33871 0 102106 18 1 genus 2 204204 Collinsella 74426 0 species 1 204186 Collinsella aerofaciens Atopobiaceae 13772 7 1 family 411 0 1643824 genus 2767353 0 875 1 Atopobium parvulum 1 875 species 0 1382 133925 0 89 genus 1 4 12485 Olsenella species 133926 0 Olsenella uli 4115 1 2829 1 0 2638792 no rank 0 712411 species 2829 1 Olsenella sp. oral taxon 807 1805478 0 species 5452 1 Olsenella sp. Marseille-P2300 1 1 Atopobium 1380 0 genus Eggerthellales 17 39801 1023 order 1 1643822 0 0 1643826 6641 1 family 38778 16 Eggerthellaceae 3 8379 Eggerthella 0 84111 28 1 genus 0 84112 species 6226 1 Eggerthella lenta 2125 1 no rank 0 2648737 Eggerthella sp. YY7918 1 2125 species 502558 0 84108 0 9 genus 1 2 4058 Slackia 0 84110 species 1 4049 Slackia heliotrinireducens 242 1 0 84162 genus 84163 0 species 1 242 Cryptobacterium curtum 644652 0 45 genus 1 3 9766 Gordonibacter 1 4626 Gordonibacter massiliensis 1841863 0 species species 1335613 0 Gordonibacter urolithinfaciens 1 5095 genus 1 12 79603 0 Denitrobacterium 2235 2 species 0 79604 Denitrobacterium detoxificans 1 2223 447020 0 7 genus 1 2 5452 Adlercreutzia 0 446660 species 5445 1 Adlercreutzia equolifaciens Phoenicibacter 2005 2 1 genus 4 0 1981050 species 1944646 0 Phoenicibacter massiliensis 1 2001 0 1798711 clade 138 63045 phylum 1 6 1117 0 Cyanobacteria 63045 138 Chroococcidiopsidales 417 2 1 order 2 0 1890505 415 1 0 1890528 family 1 415 54298 0 genus 54299 0 species 1 415 Chroococcidiopsis thermalis 0 52604 1 order 9 1349 6 Pleurocapsales 0 1890500 14 1 family 521 2 Hyellaceae 507 1 genus 44474 0 54308 0 species 507 1 Pleurocapsa minor 819 3 0 1890498 family genus 1 1 102115 0 Stanieria 3 819 2642663 0 no rank 1 644 0 1807358 species 644 1 Stanieria sp. NIES-3757 Stanieria cyanosphaera 174 1 species 102116 0 subclass 1301283 0 18785 37 12736 20 Chroococcales 1118 0 order 1 60 8 6978 family 0 1890450 0 28070 genus 2 1640 1 1216 species 2546356 0 1216 1 Cyanothece sp. PCC 7424 0 65393 strain 2546359 0 species 424 1 Cyanothece sp. PCC 7822 424 1 strain 0 497965 genus 1453359 0 84 1 1 84 Candidatus Atelocyanobacterium thalassa 0 713887 species 2 173 92682 0 no rank Halothece 173 2 1 1 genus 0 76023 0 2632878 no rank 172 1 Halothece sp. PCC 7418 1 172 species 65093 0 4322 2 genus 2546365 0 4322 2 species 0 2546366 41431 0 strain 2410 1 Cyanothece sp. PCC 8801 1912 1 Cyanothece sp. PCC 8802 0 395962 strain 263510 0 genus 759 1 species 2546360 0 759 1 strain 43989 0 Cyanothece sp. ATCC 51142 759 1 3 1 family 0 1890449 Microcystaceae 4 1001 3 998 Microcystis 0 1125 2 1 genus 0 2643300 no rank 132 1 132 1 Microcystis sp. MC19 0 1967666 species Microcystis aeruginosa 864 1 species 1126 0 1 1057 1890452 0 family 1057 1 genus 0 102234 379064 0 species 1057 1 Cyanobacterium aponinum 1890464 0 5 family 1 3640 6 Chroococcaceae 669357 0 4 genus 1 2874 3 Geminocystis 2870 2 2625037 0 no rank Geminocystis sp. NIES-3709 1604 1 species 0 1617448 species 1615909 0 Geminocystis sp. NIES-3708 1266 1 566 1 0 268175 genus 1 566 no rank 0 2648896 species 2005460 0 Chondrocystis sp. NIES-4102 1 566 195 1 genus 102231 0 1 195 0 2623012 no rank species 0 1173026 Gloeocapsa sp. PCC 7428 195 1 Oscillatoriales 6049 17 order 1 89 1150 0 7 1 family 0 1892254 Oscillatoriaceae 6 1847 3 872 Oscillatoria 1158 0 genus 1 1 Oscillatoria acuminata 1 614 species 118323 0 482564 0 species 257 1 Oscillatoria nigro-viridis 2 968 Moorea 1155738 0 1 genus 1 Moorea producens 1 967 species 0 1155739 0 1892252 family 1537 2 0 44471 genus 813 1 0 2642155 no rank 813 1 1 813 Microcoleus sp. PCC 7113 0 1173027 species 724 1 genus 1205 0 0 1206 species 1 724 Trichodesmium erythraeum 6 family 1 1892255 0 Gomontiellaceae 2 1324 1 1318 241421 0 genus 1318 1 Crinalium epipsammum 241425 0 species family 1 5 1892251 0 Coleofasciculaceae 985 3 980 2 Geitlerinema 63132 0 4 genus 1 1 976 no rank 2648775 0 1 976 Geitlerinema sp. PCC 7407 1173025 0 species Cyanothecaceae 3 267 family 1 4 1892249 0 43988 0 8 genus 1 263 2 Cyanothece 1 255 0 2649277 no rank 395961 0 species 1 255 Cyanothece sp. PCC 7425 no rank 0 1983111 208 1 0 718217 species 208 1 cyanobacterium endosymbiont of Epithemia turgida 6 1629 Gloeobacteria 307596 0 class 1 20 Gloeobacterales 1609 5 24 order 1 307595 0 1890422 0 32 family 1 1585 4 Gloeobacteraceae Gloeobacter 1553 3 22 genus 1 33071 0 1 999 Gloeobacter violaceus 0 33072 species species 0 1416614 Gloeobacter kilaueensis 1 532 Nostocales 31 12927 41 order 1 1161 0 family 1892263 0 1 320 1 320 genus 0 1190 1 320 no rank 494603 0 Fischerella sp. NIES-3754 320 1 species 1752063 0 0 1162 5 1 family 7732 17 Nostocaceae Nostoc 10 4907 10 genus 1 1177 0 7 3514 2593658 0 no rank Nostoc sp. CENA543 1 518 species 0 1869241 370 1 Nostoc sp. PCC 7107 0 317936 species Nostoc sp. NIES-3756 559 1 species 1751286 0 species 0 28072 Nostoc sp. PCC 7524 166 1 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 605 1 species 1261031 0 476 1 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 0 1618022 species Nostoc sp. PCC 7120 1 820 species 0 103690 1164 1 Nostoc flagelliforme 1306274 0 species Nostoc punctiforme 1 219 species 272131 0 1340 2 genus 264688 0 0 264691 species 1 785 Trichormus variabilis species 1164 0 Trichormus azollae 1 555 4 1480 Anabaena 1163 0 genus 1 3 2619674 0 no rank 1215 2 species 1647413 0 Anabaena sp. WA102 314 1 1 901 Anabaena sp. 90 46234 0 species 1 262 Anabaena cylindrica 1165 0 species 3316 8 family 0 2661849 1 genus 19 0 1186 Calothrix 3316 8 6 2859 no rank 2619626 0 species 2005462 0 Calothrix sp. NIES-3974 644 1 1 519 Calothrix sp. NIES-2098 0 1954171 species 0 1337936 species 1 376 Calothrix sp. 336/3 Calothrix sp. NIES-4071 1 462 species 0 2005469 Calothrix sp. PCC 7507 157 1 species 0 99598 Calothrix sp. NIES-4101 1 701 species 0 2005461 species 0 32054 Calothrix parietina 1 438 1 679 no rank 1219117 0 species 1940762 0 Nostocales cyanobacterium HT-58-2 1 679 family 1 3 1185 0 Rivulariaceae 839 3 genus 1 2 373984 0 Rivularia 2 836 no rank 2676603 0 1 834 373994 0 species 834 1 Rivularia sp. PCC 7116 order 1 142 1890424 0 Synechococcales 54 27724 Leptolyngbyaceae 5326 6 1 family 3 0 1890438 5323 5 Leptolyngbya 47251 0 genus 1 5 species 0 1184 Leptolyngbya boryana 1 567 3 4751 no rank 0 2650499 Leptolyngbya sp. NIES-3755 1 1479 species 1752064 0 Leptolyngbya sp. PCC 7376 2029 1 species 111781 0 1080068 0 species 1 1243 Leptolyngbya sp. O-77 family 0 1890428 4 1569 1569 4 Synechocystis 1142 0 genus 1 14 0 2640012 no rank 1555 3 species 0 1148 Synechocystis sp. PCC 6803 1 647 0 2116702 species 647 1 Synechocystis sp. IPPAS B-1465 0 1147 species 261 1 Synechocystis sp. PCC 6714 Prochloraceae 1740 5 4 family 1 1213 0 4 1736 Prochlorococcus 1218 0 3 genus 1 0 1219 species 1340 1 Prochlorococcus marinus 393 2 2627481 0 no rank Prochlorococcus sp. MIT 0604 275 1 species 0 1501268 Prochlorococcus sp. MIT 0801 118 1 species 1501269 0 0 1890436 family 2 285 Pseudanabaena 2 285 genus 1 3 1152 0 no rank 2593292 0 282 1 282 1 Pseudanabaena sp. PCC 7367 82654 0 species 1680 2 family 0 2303730 0 170610 1 1 genus 2 1680 Halomicronema Halomicronema hongdechloris 1 1679 species 1209493 0 0 1890429 family 1219 1 1219 1 155977 0 genus species 155978 0 Acaryochloris marina 1219 1 33 15763 Synechococcaceae 0 1890426 1 family 99 0 146785 genus 396 1 0 146786 species 396 1 Thermosynechococcus elongatus 3 2643 Cyanobium 0 167375 1 genus 45 0 59930 species 1 1085 Cyanobium gracile 1513 1 no rank 2627006 0 1851505 0 species 1513 1 Cyanobium sp. NIES-981 0 1129 1 genus 166 12479 26 Synechococcus 0 33070 species 520 1 Synechococcus lividus 0 32046 species 213 1 Synechococcus elongatus 11580 23 2626047 0 no rank species 32051 0 Synechococcus sp. WH 7803 563 1 species 1350461 0 Synechococcus sp. UTEX 2973 1 259 64471 0 species 696 1 Synechococcus sp. CC9311 316279 0 species 1022 1 Synechococcus sp. CC9902 Synechococcus sp. WH 8103 1 620 species 0 29410 species 0 374982 Synechococcus sp. PCC 73109 1 138 Synechococcus sp. PCC 7502 1 507 species 0 1173263 Synechococcus sp. KORDI-49 459 1 species 0 585423 0 195248 species 157 1 Synechococcus sp. PCC 8807 0 195253 species 165 1 Synechococcus sp. PCC 6312 species 1916956 0 Synechococcus sp. SynAce01 1 266 Synechococcus sp. CC9605 1 451 species 0 110662 species 166314 0 Synechococcus sp. WH 8109 604 1 1 687 Synechococcus sp. RCC307 316278 0 species species 321332 0 Synechococcus sp. JA-2-3B'a(2-13) 717 1 species 32049 0 Synechococcus sp. PCC 7002 1 117 1 133 Synechococcus sp. PCC 7117 195498 0 species species 0 374981 Synechococcus sp. PCC 7003 245 1 650 1 Synechococcus sp. KORDI-52 585425 0 species Synechococcus sp. WH 8102 951 1 species 84588 0 Synechococcus sp. NIES-970 1 445 species 1827144 0 Synechococcus sp. JA-3-3Ab 1 1424 species 0 321327 304 1 Synechococcus sp. KORDI-100 1280380 0 species Dactylococcopsis 2 146 1 genus 1 0 13034 Dactylococcopsis salina 1 145 species 292566 0 1859062 0 no rank 2 625 1 genus 11 0 262406 Thermobaculum 625 2 0 166501 species 614 1 Thermobaculum terrenum 15620 21 phylum 32066 0 Fusobacteriia 15620 21 class 1 3 203490 0 20 15617 Fusobacteriales 203491 0 order 1 10 Leptotrichiaceae 9 3801 family 1 5 1129771 0 genus 0 168808 384 1 384 1 Sneathia amnii 0 187101 species genus 0 34104 1 370 34105 0 species 1 370 Streptobacillus moniliformis 2356 5 Leptotrichia 32067 0 3 genus 1 no rank 0 2633022 3 1979 species 0 712357 Leptotrichia sp. oral taxon 212 985 1 360 1 Leptotrichia sp. oral taxon 498 0 712368 species Leptotrichia sp. oral taxon 847 634 1 species 1785996 0 0 40542 species 1 374 Leptotrichia buccalis 32068 0 genus 1 686 Sebaldella termitidis 1 686 species 826 0 10 11806 0 203492 family 10902 9 Fusobacterium 848 0 genus 1 39 Fusobacterium mortiferum 1 655 species 0 850 species 0 859 Fusobacterium necrophorum 905 1 972 1 Fusobacterium hwasookii 0 1583098 species 0 849 species 492 1 Fusobacterium gonidiaformans Fusobacterium nucleatum 2504 1 species 0 851 0 860 species 1 2826 Fusobacterium periodonticum species 0 861 Fusobacterium ulcerans 1 793 Fusobacterium varium 1716 1 species 0 856 1 904 genus 167639 0 0 167642 species 904 1 Ilyobacter polytropus phylum 203691 0 58 34267 Spirochaetia 34267 58 71 1 class 0 203692 1643688 0 order 8 2293 2293 8 Leptospiraceae 0 170 2 1 family 398 1 338321 0 genus species 0 29510 Turneriella parva 1 398 1 genus 7 0 171 Leptospira 6 1893 species 0 174 Leptospira borgpetersenii 196 1 0 28452 species 182 1 Leptospira alstonii 193 1 Leptospira santarosai 28183 0 species species 172 0 Leptospira biflexa 1 375 species 0 173 Leptospira interrogans 940 1 order 1 5 1643686 0 Brachyspirales 7 4768 4763 6 Brachyspiraceae 0 143786 4 1 family 1 genus 9 0 29521 Brachyspira 4759 5 159 0 species 1 1245 Brachyspira hyodysenteriae 0 84377 species 1 756 Brachyspira intermedia 450 1 Brachyspira murdochii 84378 0 species 52584 0 species 1 2299 Brachyspira pilosicoli 136 0 order 1 886 42 27135 Spirochaetales 137 0 501 family 1 24124 24 Spirochaetaceae 0 146 21 1 genus 1877 3 Spirochaeta Spirochaeta africana 1148 1 species 0 46355 708 1 Spirochaeta thermophila 0 154 species 1911556 0 genus 1 1 2 832 Sediminispirochaeta Sediminispirochaeta smaragdinae 1 831 species 0 55206 Treponema 12 15523 genus 1 56 157 0 1 3065 0 2638727 no rank 3065 1 Treponema sp. OMZ 838 0 1539298 species species 0 160 Treponema pallidum 1 232 88058 0 species 926 1 Treponema primitia 0 167 species 1 3478 Treponema succinifaciens Treponema caldarium 1 499 species 215591 0 Treponema putidum 1 2830 species 221027 0 species 0 81028 Treponema brennaborense 1 1322 Treponema denticola 1 1155 species 0 158 0 53435 species 230 1 Treponema paraluiscuniculi 1 765 Treponema pedis 409322 0 species Treponema azotonutricium 1 965 species 0 150829 1616789 0 genus 1 2 1318 2 Salinispira 1 1316 Salinispira pacifica 0 1307761 species 4073 4 Sphaerochaeta 0 399320 9 1 genus 1 916 Sphaerochaeta pleomorpha 1131707 0 species 1167 1 Sphaerochaeta coccoides 273376 0 species 1981 1 Sphaerochaeta globosa 0 1131703 species 0 1643685 3 1 family 17 2125 Borreliaceae genus 1 15 64895 0 Borreliella 900 8 species 0 139 Borreliella burgdorferi 436 1 664662 0 species 1 59 Borreliella bavariensis 63 1 Borreliella valaisiana 0 62088 species 0 64897 species 1 32 Borreliella bissettii 0 29519 species 1 150 Borreliella garinii Borreliella afzelii 1 81 species 0 29518 1674146 0 species 1 64 Borrelia mayonii Borrelia 1222 8 1 1 genus 0 138 Borrelia anserina 1 81 species 0 143 Borrelia turicatae 377 1 species 0 142 species 0 40834 Borrelia duttonii 1 98 species 0 140 Borrelia hermsii 1 247 Borrelia recurrentis 131 1 species 44449 0 47466 0 species 1 168 Borrelia miyamotoi species 141 0 Borrelia parkeri 1 119 1 phylum 926 0 1224 Proteobacteria 1988 1981827 Acidithiobacillia 2092 7 1 class 6 0 1807140 6 2086 Acidithiobacillales 225057 0 22 order 1 5 2064 Acidithiobacillaceae 0 225058 1 family 4 2060 4 Acidithiobacillus 119977 0 genus 1 11 799 1 Acidithiobacillus caldus 33059 0 species species 920 0 Acidithiobacillus ferrooxidans 674 1 species 160808 0 Acidithiobacillus ferrivorans 576 1 Zetaproteobacteria 6 1671 5 class 1 580370 0 1666 5 Mariprofundales 0 580371 1 1 order 4 family 1 580372 0 Mariprofundaceae 1665 4 Mariprofundus 3 1661 genus 1 3 377315 0 Mariprofundus ferrinatatus 1 655 species 1921087 0 1921086 0 species 1003 1 Mariprofundus aestuarium 1236 0 class 1 2134 1187510 877 Gammaproteobacteria 0 135625 1 order 3 16632 30 Pasteurellales 0 712 2212 1 family 29 16629 Pasteurellaceae 6 2025 Haemophilus 724 0 13 genus 1 0 249188 species 117 1 Haemophilus pittmaniae [Haemophilus] ducreyi 1 283 species 730 0 species 0 727 Haemophilus influenzae 1 868 1 371 no rank 2609962 0 712310 0 species 371 1 Haemophilus sp. oral taxon 036 0 729 species 1 373 Haemophilus parainfluenzae 5 2597 Actinobacillus 0 713 44 1 genus 1 731 Actinobacillus pleuropneumoniae 0 715 species Actinobacillus equuli 686 1 species 0 718 Actinobacillus succinogenes 588 1 species 67854 0 species 716 0 Actinobacillus suis 1 548 genus 697331 0 1 318 157673 0 species 1 318 [Mannheimia] succiniciproducens 9 1 genus 0 155493 Gallibacterium 1222 2 Gallibacterium anatis 1 1213 species 0 750 Aggregatibacter 3 1207 10 1 genus 0 416916 species 714 0 Aggregatibacter actinomycetemcomitans 1 513 species 732 0 Aggregatibacter aphrophilus 1 684 Pasteurella 1197 3 genus 1 6 745 0 species 747 0 Pasteurella multocida 1 878 0 754 species 1 313 Pasteurella dagmatis 2594 1 genus 476528 0 species 47735 0 Bibersteinia trehalosi 1 2594 Mannheimia 1825 4 genus 1 7 75984 0 0 85404 species 414 1 Mannheimia varigena 0 2645054 no rank 1 166 Mannheimia sp. USDA-ARS-USMARC-1261 1 166 species 0 1432056 1238 1 Mannheimia haemolytica 75985 0 species 1 1 genus 0 214906 Histophilus 913 2 Histophilus somni 912 1 species 0 731 2094023 0 genus 519 1 species 738 0 Glaesserella parasuis 1 519 0 135614 1 order 532 54 52983 Xanthomonadales family 1 328 1775411 0 Rhodanobacteraceae 8288 14 1311 2 Rhodanobacter 75309 0 30 genus 1 species 0 666685 Rhodanobacter denitrificans 1281 1 genus 1 68 231454 0 Dyella 4 2972 1 760 Dyella thiooxydans 445710 0 species 1018 1 Dyella jiangningensis 1379159 0 species 1 1126 Dyella japonica 0 231455 species 2233801 0 genus 585 1 species 0 2021234 Xanthomonadales bacterium D13 1 585 2 998 Frateuria 70411 0 8 genus 1 1 990 Frateuria aurantia 81475 0 species 0 242605 4 1 genus 2 1055 Luteibacter Luteibacter rhizovicinus 1051 1 species 0 242606 1 genus 18 0 323413 Dokdonella 2 1039 Dokdonella koreensis 1 1021 species 323415 0 339 family 1 32033 0 Xanthomonadaceae 39 44163 18834 17 Xanthomonas 0 338 1142 1 genus 1 3176 Xanthomonas campestris 339 0 species 366650 0 species 488 1 Xanthomonas alfalfae species 56460 0 Xanthomonas vesicatoria 627 1 species 456327 0 Xanthomonas euvesicatoria 1 593 825 1 Xanthomonas perforans 442694 0 species 2 3444 643453 0 species group Xanthomonas fuscans 1 796 species 0 366648 Xanthomonas citri 2648 1 species 0 346 479 1 Xanthomonas axonopodis 0 53413 species 0 347 species 1308 1 Xanthomonas oryzae 56454 0 species 1 844 Xanthomonas hortorum Xanthomonas albilineans 601 1 species 0 29447 960 1 Xanthomonas vasicola 0 56459 species Xanthomonas translucens 1951 1 species 0 343 0 1985254 species 1 851 Xanthomonas phaseoli species 56458 0 Xanthomonas sacchari 1 1325 1 220 Xanthomonas fragariae 0 48664 species Pseudoxanthomonas 3506 3 1 genus 174 0 83618 Pseudoxanthomonas suwonensis 2614 1 species 0 314722 species 0 415229 Pseudoxanthomonas spadix 718 1 0 40323 1 genus 485 15426 9 Stenotrophomonas 83617 0 species 1 840 Stenotrophomonas nitritireducens 128780 0 species 1 1870 Stenotrophomonas acidaminiphila species group 995085 0 1 7058 species 40324 0 Stenotrophomonas maltophilia 1 7058 Stenotrophomonas rhizophila 1 956 species 216778 0 no rank 196198 0 4 4217 0 2005046 species 853 1 Stenotrophomonas sp. WZN-1 species 1904944 0 Stenotrophomonas sp. LM091 937 1 0 1793721 species 769 1 Stenotrophomonas sp. KCTC 12332 Stenotrophomonas sp. MYb57 1 1658 species 0 1827305 2 678 Luteimonas 0 83614 1 genus 5 Luteimonas sp. 100111 1 673 species 2006110 0 0 68 28 1 genus 5 4691 Lysobacter 69 0 species 1 1302 Lysobacter enzymogenes Lysobacter gummosus 944 1 species 262324 0 1267 1 Lysobacter antibioticus 0 84531 species 1150 1 Lysobacter capsici 435897 0 species 2 689 Xylella 0 2370 1 1 genus species 0 2371 Xylella fastidiosa 688 1 order 1 43 1706369 0 Cellvibrionales 10629 29 Microbulbiferaceae 2246 5 10 1 family 0 1706373 1 genus 8 0 48073 Microbulbifer 4 2236 252514 0 species 1 676 Microbulbifer thermotolerans Microbulbifer aggregans 393 1 species 0 1769779 0 260552 species 1 1159 Microbulbifer agarilyticus 4 family 1 1706372 0 Halieaceae 2053 4 Halioglobus 2049 3 genus 1 6 1217416 0 1 1007 Halioglobus japonicus 0 930805 species Halioglobus pacificus 1 1036 species 0 930806 Cellvibrionaceae 13 4455 194 family 1 1706371 0 genus 1 10 2425 0 Teredinibacter 345 2 Teredinibacter turnerae 335 1 species 2426 0 0 447467 1 genus 3 2 623 Simiduia Simiduia agarivorans 1 620 species 447471 0 10 0 genus 1 46 4 2310 Cellvibrio species 0 155077 Cellvibrio japonicus 1 703 0 2624793 no rank 1561 2 1945512 0 species 1039 1 Cellvibrio sp. PSBB023 Cellvibrio sp. PSBB006 522 1 species 1987723 0 0 316625 1 genus 1 2 666 Saccharophagus 86304 0 species 1 665 Saccharophagus degradans 1 genus 1 2036021 0 Agarilytica 2 317 species 0 1737490 Agarilytica rhodophyticola 316 1 1706375 0 5 family 1 6 1832 Spongiibacteraceae genus 1 2 1084558 0 Oceanicoccus 2 918 1 916 Oceanicoccus sagamiensis 716816 0 species 496 2 Spongiibacter 630749 0 1 genus 1 no rank 2631504 0 495 1 1620392 0 species 495 1 Spongiibacter sp. IMCC21906 413 1 0 1434050 genus 1470434 0 species 413 1 Zhongshania aliphaticivorans Alteromonadales 54021 102 289 order 1 135622 0 1 family 5 0 267889 Colwelliaceae 2201 9 306 2 Thalassotalea 0 1518149 1 genus 3 303 1 Thalassotalea crassostreae 0 1763536 species 0 28228 12 1 genus 1890 6 Colwellia Colwellia beringensis 1 318 species 0 1967665 Colwellia psychrerythraea 1 202 species 28229 0 1358 3 0 196834 no rank species 58049 0 Colwellia sp. MT41 1 380 species 1816219 0 Colwellia sp. PAMC 21821 1 793 0 1816218 species 185 1 Colwellia sp. PAMC 20917 653 2 family 267894 0 653 2 genus 67572 0 357794 0 species 291 1 Psychromonas ingrahamii 0 2614957 no rank 362 1 Psychromonas sp. CNPT3 362 1 species 0 314282 28 20792 Alteromonadaceae 0 72275 74 1 family 48 genus 1 2742 0 Marinobacter 8399 10 1714 1 Marinobacter hydrocarbonoclasticus 2743 0 species species 1033846 0 Marinobacter adhaerens 1 851 species 330734 0 Marinobacter psychrophilus 1 352 Marinobacter salarius 1 927 species 1420917 0 species 1420916 0 Marinobacter similis 1 1936 species 1874317 0 Marinobacter salinus 1 1152 no rank 0 83889 3 1419 Marinobacter sp. BSs20148 1 378 species 490759 0 Marinobacter sp. LQ44 546 1 species 0 1749259 Marinobacter sp. CP1 495 1 species 1671721 0 1 genus 119 0 226 Alteromonas 8411 10 species 0 589873 Alteromonas australica 1 173 species 28108 0 Alteromonas macleodii 2160 1 Alteromonas addita 1 1223 species 287094 0 no rank 2614992 0 3 2048 0 1777491 species 1 734 Alteromonas sp. Mac1 species 0 1917158 Alteromonas sp. RW2A1 1 983 Alteromonas sp. MB-3u-76 1 331 species 2058133 0 Alteromonas naphthalenivorans 464 1 species 0 715451 Alteromonas mediterranea 1 1322 species 314275 0 Alteromonas stellipolaris 1 902 species 0 233316 89404 0 genus 2 1295 0 2618684 no rank 332 1 species 983545 0 Glaciecola sp. 4H-3-7+YE-5 332 1 0 300231 species 1 963 Glaciecola nitratireducens 1827 2 Lacimicrobium 0 1751872 3 1 genus 1526571 0 species 1 1824 Lacimicrobium alkaliphilum Agarivorans 559 2 5 1 genus 0 261825 Agarivorans gilvus 1 554 species 0 680279 1621534 0 genus 1 227 species 0 326544 Paraglaciecola psychrophila 227 1 1 family 6 0 267892 Ferrimonadaceae 2072 3 Ferrimonas 2 2066 1 genus 31 0 44011 Ferrimonas balearica 2035 1 species 44012 0 267891 0 2 family 1 3 244 Moritellaceae 4 1 genus 0 58050 Moritella 2 242 80854 0 species 238 1 Moritella viscosa 267893 0 family 1 33 6 1651 Idiomarinaceae 1618 5 Idiomarina 135575 0 genus 1 8 1 180 Idiomarina loihiensis 0 135577 species 1 733 Idiomarina piscisalsi 1096243 0 species 2 697 0 2614829 no rank species 0 2100422 Idiomarina sp. OT37-5b 260 1 species 2055892 0 Idiomarina sp. X4 1 437 465 family 1 267890 0 Shewanellaceae 16580 25 16115 24 Shewanella 22 0 370 genus 1 Shewanella psychrophila 1 1090 species 225848 0 species 359303 0 Shewanella loihica 1 2093 1 633 Shewanella putrefaciens 0 24 species species 60217 0 Shewanella violacea 1 397 Shewanella frigidimarina 1 256 species 56812 0 1 309 Shewanella bicestrii 2018305 0 species species 271098 0 Shewanella halifaxensis 704 1 species 0 271097 Shewanella sediminis 548 1 Shewanella piezotolerans 586 1 species 0 404011 species 93973 0 Shewanella japonica 1 149 Shewanella denitrificans 477 1 species 192073 0 species 260364 0 Shewanella marisflavi 453 1 62322 0 species 1654 1 Shewanella baltica Shewanella amazonensis 1 1064 species 60478 0 1 1373 Shewanella pealeana 0 70864 species Shewanella woodyi 1 676 species 0 60961 628 1 Shewanella oneidensis 70863 0 species 2655 6 196818 0 no rank Shewanella sp. WE21 1 204 species 2029986 0 609 1 Shewanella sp. MR-4 0 60480 species 2059264 0 species 192 1 Shewanella sp. Pdp11 1 619 Shewanella sp. MR-7 60481 0 species 0 94122 species 1 397 Shewanella sp. ANA-3 1 634 Shewanella sp. W3-18-1 0 351745 species 1 family 9 0 267888 Pseudoalteromonadaceae 25 9539 genus 1 111 53246 0 Pseudoalteromonas 9530 24 Pseudoalteromonas atlantica 236 1 species 0 288 Pseudoalteromonas spongiae 568 1 species 0 298657 Pseudoalteromonas nigrifaciens 336 1 species 0 28109 194690 0 no rank 2645 5 1720343 0 species 1 1192 Pseudoalteromonas sp. 1_2015MBL_MicDiv species 0 1514074 Pseudoalteromonas sp. NC201 1 266 species 1761891 0 Pseudoalteromonas sp. 13-15 326 1 283699 0 species 1 419 Pseudoalteromonas sp. Bsw20308 0 234831 species 1 442 Pseudoalteromonas sp. SM9913 species 0 43662 Pseudoalteromonas piscicida 239 1 0 267375 species 91 1 Pseudoalteromonas marina species 0 152297 Pseudoalteromonas issachenkonii 469 1 228 0 species 239 1 Pseudoalteromonas haloplanktis 139 1 Pseudoalteromonas arctica 394751 0 species Pseudoalteromonas aliena 421 1 species 247523 0 Pseudoalteromonas espejiana 133 1 species 28107 0 0 176102 species 101 1 Pseudoalteromonas agarivorans 0 43658 species 1 894 Pseudoalteromonas rubra Pseudoalteromonas piratica 1191 1 species 0 1348114 1 312 Pseudoalteromonas luteoviolacea 43657 0 species 1 482 Pseudoalteromonas tunicata 314281 0 species 1 280 Pseudoalteromonas translucida 0 166935 species 468 1 Pseudoalteromonas tetraodonis 43659 0 species 1 175 Pseudoalteromonas phenolica 0 161398 species 35553 44 Vibrionales 0 135623 1 order 8 43 35545 Vibrionaceae 641 0 611 family 1 Vibrio 27526 30 456 genus 1 662 0 species 1534743 0 Vibrio hyugaensis 175 1 Vibrio tritonius 1 320 species 1435069 0 species group 0 1891919 244 1 1 244 Vibrio tubiashii 0 29498 species 29494 0 species 1 849 Vibrio furnissii species 55601 0 Vibrio anguillarum 1 922 1131 1 Vibrio mimicus 0 674 species 0 717610 species group 10765 10 1471 1 Vibrio harveyi 669 0 species 0 766224 species 1 433 Vibrio jasicida 1 699 Vibrio rotiferianus 0 190895 species 561 1 Vibrio owensii 0 696485 species 1 1869 Vibrio alginolyticus 0 663 species 680 0 species 1 1494 Vibrio campbellii 0 2315253 species subgroup 942 2 686 1 Vibrio diabolicus 50719 0 species Vibrio antiquarius 256 1 species 150340 0 species 0 691 Vibrio natriegens 1887 1 species 0 670 Vibrio parahaemolyticus 1409 1 212663 0 species 316 1 Vibrio tasmaniensis species 0 2025808 Vibrio qinghaiensis 1 217 species 0 190893 Vibrio coralliilyticus 1 2007 Vibrio gazogenes 1 988 species 687 0 1 2251 Vibrio cholerae 0 666 species 28173 0 species 622 1 Vibrio nigripulchritudo species 45658 0 Vibrio scophthalmi 211 1 1 1020 Vibrio fluvialis 0 676 species 742 1 Vibrio tapetis 52443 0 species Vibrio breoganii 1 497 species 0 553239 species 0 672 Vibrio vulnificus 2092 1 no rank 0 2614977 1701 2 Vibrio sp. 2521-89 769 1 species 0 2014742 Vibrio sp. EJY3 1 932 species 1116375 0 genus 1 7 246861 0 Grimontia 2 583 species 673 0 Grimontia hollisae 1 576 Paraphotobacterium 441 2 1 genus 1 0 2042066 species 0 1755811 Paraphotobacterium marinum 440 1 1 genus 1 511678 0 Aliivibrio 4 2655 Aliivibrio salmonicida 1 436 species 0 40269 80852 0 species 1 226 Aliivibrio wodanis 1 1992 Aliivibrio fischeri 0 668 species 3729 4 Photobacterium 0 657 6 1 genus Photobacterium gaetbulicola 1 1555 species 0 1295392 74109 0 species 914 1 Photobacterium profundum species 38293 0 Photobacterium damselae 1254 1 91347 0 order 1 1559 242 741027 Enterobacterales 14988 21 Morganellaceae 1903414 0 family 1 287 genus 1 157 583 0 Proteus 3 3644 585 0 species 1 532 Proteus vulgaris Proteus mirabilis 2955 1 species 584 0 1 genus 22 0 29487 Photorhabdus 4 2572 29488 0 species 484 1 Photorhabdus luminescens species 291112 0 Photorhabdus asymbiotica 1 1188 species 574560 0 Photorhabdus temperata 1 878 3348 4 Providencia 0 586 1 genus 29 species 0 587 Providencia rettgeri 1 1175 species 126385 0 Providencia alcalifaciens 1014 1 Providencia stuartii 1 1130 species 0 588 6 2707 Xenorhabdus 0 626 1 genus 34 species 351671 0 Xenorhabdus doucetiae 493 1 40576 0 species 447 1 Xenorhabdus bovienii 521 1 Xenorhabdus nematophila 628 0 species 1 271 Xenorhabdus poinarii 40577 0 species Xenorhabdus hominickii 941 1 species 351679 0 1 54 genus 637 0 Arsenophonus symbiont of Lipoptena fortisetosa 1 54 species 0 634113 Morganella 2 2376 genus 1 273 581 0 0 582 species 1 2103 Morganella morganii 27 family 1 1903412 0 Hafniaceae 10774 14 1405 2 Obesumbacterium 82982 0 356 genus 1 1 1049 Obesumbacterium proteus 0 82983 species Hafnia 2230 3 56 1 genus 0 568 1 1023 no rank 0 2621980 1 1023 Hafnia sp. CBA7124 0 1848580 species Hafnia alvei 1151 1 species 0 569 genus 1 687 635 0 Edwardsiella 8 7112 0 2676541 no rank 2 1588 1650654 0 species 799 1 Edwardsiella sp. LADL05-105 789 1 Edwardsiella sp. EA181011 0 1578828 species 0 1263550 species 643 1 Edwardsiella piscicida species 67780 0 Edwardsiella ictaluri 632 1 889 1 Edwardsiella hoshinae 93378 0 species 1842 1 Edwardsiella tarda 0 636 species 1 831 Edwardsiella anguillarum 1821960 0 species 22081 27 Erwiniaceae 1903409 0 36 family 1 14 1 genus 0 82986 Tatumella 2 345 Tatumella citrea 1 331 species 53336 0 Erwinia 8 6368 149 1 genus 0 551 0 2622719 no rank 1 728 Erwinia sp. Ejp617 728 1 species 215689 0 1 1238 Erwinia amylovora 552 0 species species 0 182337 Erwinia billingiae 1410 1 1 1089 Erwinia pyrifoliae 0 79967 species Erwinia tasmaniensis 775 1 species 0 338565 species 1922217 0 Candidatus Erwinia sp. ErCipseudotaxifoliae 1 140 1619313 0 species 839 1 Erwinia gerundensis 0 32199 1 genus 3 2 638 Buchnera Buchnera aphidicola 1 635 species 0 9 2 2308 2100764 0 genus Pantoea gaviniae 1049 1 species 665914 0 Pantoea calida 1 1259 species 0 665913 Pantoea 11 12292 genus 1 1080 53335 0 0 66269 species 1002 1 Pantoea stewartii 3 3830 no rank 2630326 0 Pantoea sp. PSNIH2 1 1578 species 0 1484157 1484158 0 species 723 1 Pantoea sp. PSNIH1 1529 1 Pantoea sp. At-9b 592316 0 species Pantoea ananatis 1 1388 species 0 553 1 1620 species group 1654067 0 1620 1 Pantoea agglomerans 0 549 species 2129 1 Pantoea vagans 470934 0 species Candidatus Pantoea carbekii 1 86 species 0 1235990 1891675 0 species 592 1 Pantoea alhagi species 0 1076550 Pantoea rwandensis 1 565 94 1 genus 51228 0 species 51229 0 Wigglesworthia glossinidia 94 1 Yersiniaceae 39603 39 1 family 89 0 1903411 0 1745211 2 1 genus 2 612 Chania species 1639108 0 Chania multitudinisentens 1 610 1565532 0 genus 1 8 Rouxiella Yersinia 15224 13 664 genus 1 629 0 634 1 Yersinia rohdei 0 29485 species Yersinia enterocolitica 3171 1 species 0 630 1 356 Yersinia ruckeri 0 29486 species 2512 3 species group 1649845 0 1 806 Yersinia similis 367190 0 species 0 633 species 1 746 Yersinia pseudotuberculosis species 0 632 Yersinia pestis 960 1 Yersinia frederiksenii 1 3251 species 0 29484 631 0 species 1 1126 Yersinia intermedia Yersinia kristensenii 1 1059 species 28152 0 29483 0 species 1 234 Yersinia aldovae species 0 263819 Yersinia aleksiciae 1095 1 1 1122 0 2653513 no rank 1839800 0 species 1 1122 Yersinia sp. FDAARGOS_228 4 2619 Rahnella 34037 0 76 genus 1 2 1896 2635087 0 no rank 676 1 Rahnella sp. Y9602 741091 0 species 1220 1 Rouxiella sp. ERMR1:05 0 1805933 species 0 34038 species 647 1 Rahnella aquatilis 1207 genus 1 613 0 Serratia 20163 16 47917 0 species 1 1560 Serratia fonticola species 61652 0 Serratia rubidaea 733 1 0 28151 species 1 938 Serratia proteamaculans species 0 61651 Serratia ficaria 830 1 0 615 species 4943 1 Serratia marcescens 5521 8 0 2647522 no rank species 0 2033438 Serratia sp. MYb239 1 789 species 768493 0 Serratia sp. AS13 677 1 species 0 1327989 Serratia sp. FS14 610 1 838 1 Serratia sp. FGI94 0 671990 species 728 1 Serratia sp. SSNIH1 0 1758196 species species 768490 0 Serratia sp. AS12 677 1 Serratia sp. SCBI 631 1 species 488142 0 Serratia sp. ATCC 39006 1 571 species 104623 0 1 3146 Serratia plymuthica 82996 0 species 1 1285 Serratia liquefaciens 0 614 species genus 1 4 929812 0 Gibbsiella 888 2 Gibbsiella quercinecans 1 884 species 0 929813 0 543 1 family 3988 116 632633 Enterobacteriaceae 5 330175 Escherichia 561 0 4802 genus 1 Escherichia fergusonii 1 19123 species 0 564 562 0 species 280540 1 Escherichia coli species 1499973 0 Escherichia marmotae 1 7692 208962 0 species 18018 1 Escherichia albertii 1330546 0 13 genus 1 4417 3 Pluralibacter 0 61647 species 1 2650 Pluralibacter gergoviae 0 1334193 species 1 1754 [Enterobacter] lignolyticus Raoultella 7217 3 395 genus 1 160674 0 species 54291 0 Raoultella ornithinolytica 1 4829 1993 1 Raoultella planticola 0 575 species genus 0 409304 1 81 0 168169 species 81 1 Candidatus Ishikawaella capsulata 4 4329 Lelliottia 1330545 0 30 genus 1 species 69220 0 Lelliottia nimipressuralis 963 1 778 1 Lelliottia jeotgali 1907578 0 species 1 2558 Lelliottia amnigena 61646 0 species 137 genus 1 83654 0 Leclercia 4 3711 no rank 0 2627398 2608 2 Leclercia sp. LSNIH3 1 1074 species 1920116 0 1920114 0 species 1534 1 Leclercia sp. LSNIH1 Leclercia adecarboxylata 966 1 species 83655 0 genus 0 1048757 423 1 species 1048758 0 Candidatus Moranella endobia 423 1 Enterobacter 22 37426 1 genus 2882 0 547 7210 9 2608935 0 no rank species 0 399742 Enterobacter sp. 638 1194 1 Enterobacter sp. HK169 282 1 species 0 1868135 0 1692238 species 666 1 Enterobacter sp. FY-07 1 1020 Enterobacter sp. CRENT-193 2051905 0 species 421 1 Enterobacter sp. Crenshaw 0 1977566 species 391 1 Enterobacter sp. E20 1560339 0 species 1 1017 Enterobacter sp. ODB01 0 1827481 species 1166130 0 species 1 1354 Enterobacter sp. R4-368 Enterobacter sp. SA187 865 1 species 0 1914861 0 354276 species group 27334 12 no rank 0 2757714 2708 3 0 2027919 species 1 693 Enterobacter cloacae complex bacterium Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 430 species 0 2077137 1585 1 Enterobacter cloacae complex sp. ECNIH7 1915310 0 species species 0 1812935 Enterobacter cloacae complex 'Hoffmann cluster IV' 1 864 4388 species 1 158836 0 Enterobacter hormaechei 7316 3 subspecies 0 1296536 Enterobacter xiangfangensis 1 853 2075 1 Enterobacter cloacae complex 'Hoffmann cluster III' 0 1812934 subspecies Enterobacter asburiae 4132 1 species 0 61645 Enterobacter cancerogenus 768 1 species 69218 0 species 0 550 Enterobacter cloacae 1 10143 species 0 299767 Enterobacter ludwigii 597 1 1 806 Enterobacter kobei 208224 0 species 3133 2 Cedecea 0 158483 11 1 genus 3122 1 Cedecea neteri 0 158822 species 8014 8 Cronobacter 0 413496 193 1 genus species 413502 0 Cronobacter turicensis 995 1 1 888 Cronobacter muytjensii 413501 0 species 639 1 Cronobacter universalis 535744 0 species Cronobacter dublinensis 1 849 species 413497 0 species 413503 0 Cronobacter malonaticus 1520 1 Cronobacter condimenti 523 1 species 1163710 0 1 2407 Cronobacter sakazakii 28141 0 species 104515 4 Shigella 0 620 6919 1 genus 0 2629414 no rank 45464 1 species 0 1813821 Shigella sp. PAMC 28760 1 45464 species 623 0 Shigella flexneri 1 22489 29643 1 Shigella dysenteriae 622 0 species 1 954 genus 0 1335483 Shimwellia blattae 1 954 species 0 563 1 92 genus 401618 0 species 401619 0 Candidatus Riesia pediculicola 1 92 no rank 0 191675 17 2512 84563 0 clade 17 2512 6 623 84564 0 clade 203804 0 genus 6 623 30 1 Candidatus Blochmannia vafer 0 251535 species 101534 0 species 1 35 Candidatus Blochmannia pennsylvanicus 1 91 Candidatus Blochmannia chromaiodes 0 251542 species no rank 0 711328 2 418 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 34 species 0 1505596 species 0 1505597 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1 384 Candidatus Blochmannia floridanus 49 1 species 203907 0 1 96 genus 0 1906661 Candidatus Gullanella endobia 96 1 species 0 1070130 4 806 clade 146507 0 species 134287 0 secondary endosymbiont of Heteropsylla cubana 1 53 1199245 0 species 118 1 secondary endosymbiont of Ctenarytaina eucalypti 568987 0 genus 1 9 2 635 Candidatus Hamiltonella 1 626 Candidatus Hamiltonella defensa 0 138072 species 199891 0 clade 56 1 species 1835721 0 secondary endosymbiont of Trabutina mannipara 56 1 1 49 1906659 0 genus species 0 1778263 Candidatus Hoaglandella endobia 49 1 32 1 0 1906660 genus Candidatus Mikella endobia 1 32 species 1778264 0 genus 0 1682492 1 481 1 481 Candidatus Tachikawaea gelatinosa 1410383 0 species 6 genus 1 1906657 0 Candidatus Doolittlea 369 2 1 363 Candidatus Doolittlea endobia 1778262 0 species 579 0 1 genus 1 2 1204 Kluyvera species 0 61648 Kluyvera intermedia 1 1203 7512 5 no rank 0 36866 891974 0 species 1 1207 Plautia stali symbiont species 2066051 0 Enterobacteriaceae bacterium ENNIH1 1 1635 693444 0 species 1 2105 Enterobacteriaceae bacterium strain FGI 57 Enterobacteriaceae bacterium ENNIH2 1324 1 species 0 1920109 1920128 0 species 1241 1 Enterobacteriaceae bacterium ENNIH3 3 26449 Salmonella 0 590 237 1 genus species 0 54736 Salmonella bongori 1 997 25215 1 Salmonella enterica 0 28901 species 1330547 0 genus 1 82 4546 5 Kosakonia species 0 283686 Kosakonia radicincitans 915 1 0 497725 species 720 1 Kosakonia oryzae Kosakonia cowanii 1 1775 species 0 208223 species 0 1158459 Kosakonia sacchari 1 1054 Citrobacter 14 32729 2333 1 genus 0 544 2006 2 0 2644389 no rank species 0 1702170 Citrobacter sp. FDAARGOS_156 1 693 1 1313 Citrobacter sp. CFNIH10 1920110 0 species 19929 7 species group 1344959 0 2077149 0 species 962 1 Citrobacter freundii complex sp. CFNIH9 1 1080 Citrobacter freundii complex sp. CFNIH4 2077148 0 species 898 1 Citrobacter freundii complex sp. CFNIH2 2066049 0 species species 0 67827 Citrobacter werkmanii 2775 1 9806 1 Citrobacter freundii 546 0 species 57706 0 species 1 1935 Citrobacter braakii Citrobacter freundii complex sp. CFNIH3 2473 1 species 2077147 0 0 67825 species 1845 1 Citrobacter rodentium Citrobacter farmeri 1 1574 species 67824 0 species 35703 0 Citrobacter amalonaticus 3094 1 1 1948 Citrobacter koseri 0 545 species 10 49206 Klebsiella 570 0 genus 1 1793 0 548 species 1 1987 Klebsiella aerogenes 0 244366 species 4847 1 Klebsiella variicola 1463165 0 species 1 3083 Klebsiella quasipneumoniae Klebsiella oxytoca 1 5876 species 0 571 2608929 0 no rank 2 2739 species 0 1905288 Klebsiella sp. LTGPAF-6F 1 1661 1 1078 Klebsiella sp. M5al 1934254 0 species 0 2026240 species 3163 1 Klebsiella quasivariicola species 573 0 Klebsiella pneumoniae 22821 1 0 1134687 species 2897 1 Klebsiella michiganensis family 0 1903416 793 2 0 82984 1 genus 3 793 2 Pragia 82985 0 species 1 790 Pragia fontium 1 family 51 0 1903410 Pectobacteriaceae 20 17642 Dickeya 6 7481 366 genus 1 204037 0 Dickeya dianthicola 1 1137 species 0 204039 0 1778540 species 1 1256 Dickeya fangzhongdai species 0 204042 Dickeya zeae 2291 1 species 0 1089444 Dickeya solani 1 1441 204038 0 species 1 990 Dickeya dadantii 172 1 genus 0 122277 Pectobacterium 7653 6 1 499 Pectobacterium atrosepticum 29471 0 species 55208 0 species 1177 1 Pectobacterium wasabiae Pectobacterium parmentieri 1 414 species 1905730 0 Pectobacterium carotovorum 3313 1 species 0 554 species 0 2042057 Pectobacterium polaris 2078 1 71655 0 genus 1 8 2 737 Brenneria 1 729 Brenneria goodwinii 0 1109412 species 32 genus 1 84565 0 Sodalis 1720 5 555 1 Sodalis glossinidius 63612 0 species Candidatus Sodalis pierantonius 474 1 species 0 1486991 species 1239307 0 Sodalis praecaptivus 1 609 Sodalis endosymbiont of Henestaris halophilus 50 1 species 0 1929246 no rank 451511 0 954 2 6 1 genus 0 702 Plesiomonas 954 2 Plesiomonas shigelloides 948 1 species 0 703 0 1934945 29 1 order 4 1357 Immundisolibacterales Immundisolibacteraceae 3 1328 51 1 family 0 1934946 3 genus 1 1934947 0 Immundisolibacter 1277 2 Immundisolibacter cernigliae 1274 1 species 1810504 0 6 order 1 135615 0 Cardiobacteriales 3 178 172 2 868 0 family 1 genus 4 0 869 Dichelobacter 2 172 168 1 Dichelobacter nodosus 870 0 species no rank 118884 0 4420 12 519 3 clade 32036 0 0 410330 species 1 57 Calyptogena okutanii thioautotrophic gill symbiont genus 1541743 0 106 1 species 386487 0 Candidatus Ruthia magnifica 1 106 1 356 Bathymodiolus septemdierum thioautotrophic gill symbiont 113267 0 species 4 1 genus 0 1608298 Thiolapillus 814 2 Thiolapillus brandeum 810 1 species 0 1076588 2 385 genus 0 655184 1 120 Candidatus Thioglobus autotrophicus 0 1705394 species species 1427364 0 Candidatus Thioglobus singularis 1 265 0 349742 1 genus 3 2 952 Sedimenticola species 0 1543721 Sedimenticola thiotaurini 949 1 3 genus 1 1524249 0 Pseudohongiella 1323 2 species 0 1249552 Pseudohongiella spirulinae 1 1320 clade 0 198346 427 1 1 427 Candidatus Baumannia cicadellinicola 186490 0 species Thiotrichales 31 12322 1 order 1 0 72273 Thiotrichaceae 3 564 28 1 family 0 135617 449 1 1021 0 genus species 0 288004 Beggiatoa leptomitoformis 1 449 40751 0 genus 1 87 0 40754 species 1 87 Thioploca ingrica 7781 15 Francisellaceae 34064 0 family 1 13 2 696 Allofrancisella 0 1869285 1 1 genus species 594679 0 Allofrancisella guangzhouensis 1 695 7072 12 Francisella 0 262 39 1 genus Francisella sp. TX077310 1 272 species 573570 0 Francisella philomiragia 1 1604 species 0 28110 0 954 species 316 1 Francisella persica Francisella halioticida 1 99 species 549298 0 494 1 Francisella sp. CA97-1460 1542390 0 species 2 1400 0 2610885 no rank 475375 0 species 86 1 Francisella sp. MA067296 1314 1 Francisella sp. FSC1006 0 1547445 species 0 657445 species 746 1 Francisella noatunensis 1 429 Francisella sp. TX077308 573569 0 species 428 1 Francisella hispaniensis 622488 0 species 1 1245 Francisella tularensis 0 263 species Piscirickettsiaceae 3976 12 family 1 13 135616 0 Cycloclasticus 1597 4 4 1 genus 0 34067 Cycloclasticus zancles 585 1 species 0 1329899 no rank 0 2621467 1008 2 Cycloclasticus sp. PY97N 586 1 species 728003 0 0 385025 species 422 1 Cycloclasticus sp. P1 genus 28884 0 170 1 Hydrogenovibrio crunogenus 170 1 species 0 39765 2 557 genus 933 0 0 147268 species 1 103 Thiomicrospira cyclica 1 454 Thiomicrospira aerophila 0 92245 species 8 1 genus 0 1237 Piscirickettsia 2 1047 1238 0 species 1 1039 Piscirickettsia salmonis genus 0 40222 592 2 species 754476 0 Methylophaga nitratireducenticrescens 1 355 species 754477 0 Methylophaga frappieri 1 237 33447 29 Aeromonadales 135624 0 155 order 1 Aeromonadaceae 33292 28 392 1 family 0 84642 7 genus 1 129577 0 Oceanimonas 1392 2 no rank 0 2636315 1385 1 0 511062 species 1 1385 Oceanimonas sp. GK1 Tolumonas 2 1953 1 genus 1 0 43947 Tolumonas auensis 1 1952 species 0 43948 1989 genus 1 642 0 Aeromonas 18 24799 0 948519 species 1 1479 Aeromonas rivipollensis 8 7396 no rank 0 257493 1 753 Aeromonas sp. ASNIH5 0 1758179 species 1040 1 Aeromonas sp. CU5 2033033 0 species species 1636609 0 Aeromonas sp. ASNIH4 1308 1 Aeromonas sp. CA23 1 1209 species 0 2033032 590 1 Aeromonas sp. ASNIH2 0 1636607 species species 0 1636608 Aeromonas sp. ASNIH3 1 1281 Aeromonas sp. ASNIH7 566 1 species 0 1920107 649 1 Aeromonas sp. ASNIH1 0 1636606 species Aeromonas veronii 1 1970 species 0 654 Aeromonas media 1170 1 species 0 651 0 196024 species 951 1 Aeromonas dhakensis species 0 645 Aeromonas salmonicida 2064 1 species 652 0 Aeromonas schubertii 1 1196 Aeromonas aquatica 1347 1 species 0 558964 species 644 0 Aeromonas hydrophila 1 4761 species 648 0 Aeromonas caviae 476 1 Oceanisphaera 3 2871 genus 1 1 225143 0 Oceanisphaera profunda 2774 1 species 0 1416627 96 1 Oceanisphaera sp. AMac2203 0 1903694 species 2 1885 Zobellella 0 347533 19 1 genus 0 347534 species 1866 1 Zobellella denitrificans 33811 0 no rank 1705 2 endosymbiont of unidentified scaly snail isolate Monju 1 874 species 0 1248727 1 831 gamma proteobacterium HdN1 0 83406 species Pseudomonadales 148760 128 980 1 order 0 72274 468 0 155 family 1 42 22034 Moraxellaceae Psychrobacter 4656 11 genus 1 24 497 0 6 3205 196806 0 no rank Psychrobacter sp. AntiMn-1 111 1 species 1720344 0 1699624 0 species 1 192 Psychrobacter sp. P11G5 1992 1 Psychrobacter sp. PRwf-1 0 349106 species 1 125 Psychrobacter sp. P2G3 1699622 0 species species 0 1028416 Psychrobacter sp. DAB_AL43B 676 1 species 571800 0 Psychrobacter sp. G 109 1 species 0 330922 Psychrobacter cryohalolentis 1 119 1 375 Psychrobacter urativorans 0 45610 species Psychrobacter alimentarius 1 282 species 261164 0 Psychrobacter arcticus 651 1 species 0 334543 34 genus 1 475 0 Moraxella 5 2636 0 386891 species 1 651 Moraxella bovoculi species 0 29433 Moraxella ovis 1 300 species 34062 0 Moraxella osloensis 1210 1 species 480 0 Moraxella catarrhalis 1 441 469 0 genus 1 283 14587 25 Acinetobacter 1 709 Acinetobacter bereziniae 106648 0 species 1 652 Acinetobacter equi 1324350 0 species Acinetobacter indicus 1 656 species 756892 0 5 4522 species group 0 909768 Acinetobacter baumannii 1501 1 species 0 470 257 1 Acinetobacter nosocomialis 0 106654 species 0 471 species 1535 1 Acinetobacter calcoaceticus Acinetobacter pittii 913 1 species 48296 0 Acinetobacter lactucae 1 316 species 1785128 0 7 4086 0 196816 no rank 1254 1 Acinetobacter sp. LoGeW2-3 0 1808001 species Acinetobacter sp. NCu2D-2 178 1 species 1608473 0 819 1 Acinetobacter sp. TTH0-4 0 1646498 species species 1407071 0 Acinetobacter sp. TGL-Y2 669 1 species 2079596 0 Acinetobacter sp. SWBY1 211 1 species 0 1636603 Acinetobacter sp. ACNIH1 274 1 Acinetobacter sp. ACNIH2 1 681 species 0 1758189 0 1789224 species 1 405 Acinetobacter larvae 1 574 Acinetobacter junii 0 40215 species 539 1 Acinetobacter schindleri 0 108981 species 29430 0 species 1 345 Acinetobacter haemolyticus 1 249 Acinetobacter soli 487316 0 species 1 516 Acinetobacter oleivorans 0 1148157 species species 0 40216 Acinetobacter radioresistens 1 506 213 1 0 202950 species Acinetobacter sp. ADP1 1 213 strain 62977 0 Acinetobacter johnsonii 1 332 species 0 40214 0 135621 1 family 844 125746 85 Pseudomonadaceae 3 3974 subfamily 0 351 0 352 25 1 genus 3 3974 Azotobacter 0 353 species 1 2579 Azotobacter chroococcum species 354 0 Azotobacter vinelandii 1 1370 286 0 genus 1 4208 80 120503 Pseudomonas 0 136842 species group 2 5887 species 0 296 Pseudomonas fragi 1153 1 0 587753 species 1 4734 Pseudomonas chlororaphis 0 157782 species 1 1387 Pseudomonas parafulva 13158 8 species group 136849 0 0 33069 species 1 1731 Pseudomonas viridiflava 1928 2 species subgroup 251698 0 0 29438 species 882 1 Pseudomonas savastanoi species 0 47877 Pseudomonas amygdali 1 1046 0 251701 species 1401 1 Pseudomonas syringae group genomosp. 3 46257 0 species 676 1 Pseudomonas avellanae no rank 2775504 0 403 1 species 0 1206777 Pseudomonas sp. Lz4W 1 403 6227 1 species subgroup 251695 0 Pseudomonas syringae 1 6227 species 0 317 36746 0 species 792 1 Pseudomonas cichorii species group 0 136841 6 15010 species 0 300 Pseudomonas mendocina 4308 1 1164 1 0 1232139 species subgroup Pseudomonas furukawaii 1 1164 species 0 1149133 1357 1 Pseudomonas resinovorans 0 53412 species Pseudomonas citronellolis 2245 1 species 0 53408 species 0 287 Pseudomonas aeruginosa 1 5073 0 43263 species 863 1 Pseudomonas alcaligenes 0 216142 species 1 1002 Pseudomonas rhizosphaerae Pseudomonas silesiensis 1 445 species 0 1853130 species 0 237609 Pseudomonas alkylphenolica 1 1230 species 0 198620 Pseudomonas koreensis 1164 1 1 711 Pseudomonas entomophila 0 312306 species species 0 219572 Pseudomonas antarctica 1 942 196821 0 no rank 30 24163 species 0 2083051 Pseudomonas sp. SWI6 1 442 Pseudomonas sp. StFLB209 1147 1 species 0 1028989 Pseudomonas sp. LPH1 840 1 species 1898684 0 1534110 0 species 1 759 Pseudomonas sp. DR 5-09 species 0 69328 Pseudomonas sp. VLB120 1 565 species 2069256 0 Pseudomonas sp. XWY-1 726 1 Pseudomonas sp. NC02 495 1 species 0 2067572 species 1611770 0 Pseudomonas sp. MRSN12121 1 592 0 1283291 species 1828 1 Pseudomonas sp. URMO17WK12:I11 Pseudomonas sp. PONIH3 1 533 species 0 1636610 1 487 Pseudomonas sp. TKP 0 1415630 species 295 1 Pseudomonas sp. MYb193 0 1827300 species 2083055 0 species 1 849 Pseudomonas sp. LH1G9 Pseudomonas sp. HLS-6 1 1221 species 2049589 0 1294143 0 species 1 1084 Pseudomonas sp. ATCC 13867 Pseudomonas sp. CCOS 191 1 621 species 1649877 0 0 1500686 species 1 693 Pseudomonas sp. Os17 species 2083054 0 Pseudomonas sp. LG1D9 736 1 1338689 0 species 1 717 Pseudomonas sp. JY-Q 1 491 Pseudomonas sp. SWI44 0 2083053 species Pseudomonas sp. UW4 1 284 species 0 1207075 967 1 Pseudomonas sp. M30-35 1981174 0 species species 0 2083052 Pseudomonas sp. SWI36 738 1 Pseudomonas sp. St29 1 719 species 1500687 0 1729 1 Pseudomonas sp. CC6-YY-74 1930532 0 species 1 1290 Pseudomonas sp. TCU-HL1 1856685 0 species species 0 2018067 Pseudomonas sp. FDAARGOS_380 761 1 0 1659194 species 1 1038 Pseudomonas sp. GR 6-02 586 1 Pseudomonas sp. FGI182 0 1259844 species Pseudomonas sp. S-6-2 1 930 species 1931241 0 244566 0 species 1 984 Pseudomonas lurida species 1583341 0 Pseudomonas cerasi 1 1177 1324 1 Pseudomonas frederiksbergensis 104087 0 species 2 5722 species group 136846 0 species subgroup 578833 0 5145 1 Pseudomonas stutzeri 1 5145 species 316 0 Pseudomonas balearica 577 1 species 0 74829 species 1788301 0 Pseudomonas versuta 323 1 species 930166 0 Pseudomonas brassicacearum 1614 1 9 15293 0 136843 species group 1 563 Pseudomonas corrugata 0 47879 species 1 901 Pseudomonas azotoformans 47878 0 species 1 979 Pseudomonas mandelii 0 75612 species species 76758 0 Pseudomonas orientalis 614 1 294 0 species 1 8894 Pseudomonas fluorescens species 0 200450 Pseudomonas trivialis 1 1139 1 521 Pseudomonas veronii 76761 0 species 0 200451 species 1 396 Pseudomonas poae 380021 0 species 1 1286 Pseudomonas protegens 6 20033 species group 0 136845 1 1536 Pseudomonas oryzihabitans 0 47885 species 78327 0 species 1 1457 Pseudomonas mosselii 1 662 Pseudomonas plecoglossicida 0 70775 species species 0 47880 Pseudomonas fulva 2957 1 species 76759 0 Pseudomonas monteilii 1 2746 Pseudomonas putida 1 10675 species 0 303 0 101564 species 985 1 Pseudomonas alcaliphila species 65741 0 Pseudomonas knackmussii 1006 1 Pseudomonas psychrotolerans 1 2092 species 0 237610 1 643 Pseudomonas cremoricolorata 0 157783 species 0 1849530 genus 1 425 0 1697053 species 1 425 Oblitimonas alkaliphila 1775403 0 12 order 1 4 875 Nevskiales 0 568386 family 1 11 Sinobacteraceae family 2689614 0 852 2 0 469322 6 1 genus 2 852 Steroidobacter 1 846 Steroidobacter denitrificans 465721 0 species Acidiferrobacterales 1796 6 21 order 1 1692040 0 24 1 family 0 1692041 Acidiferrobacteraceae 1775 5 1 genus 22 0 1744881 Sulfuricaulis 2 813 species 0 1620215 Sulfuricaulis limicola 791 1 938 2 Sulfurifustis 0 1692042 15 1 genus 1675686 0 species 1 923 Sulfurifustis variabilis 68 33472 Oceanospirillales 135619 0 240 order 1 5 1418 Saccharospirillaceae 255527 0 family 1 3 0 230494 1 genus 4 2 468 Reinekea species 1336806 0 Reinekea forsetii 1 464 Gynuella 947 2 7 genus 1 1445504 0 Gynuella sunshinyii 1 940 species 0 1445505 242 1 family 0 28256 Halomonadaceae 18505 31 376488 0 16 genus 1 2 986 Halotalea 970 1 Halotalea alkalilenta 0 376489 species 114403 0 no rank 4 74 114185 0 genus 24 1 species 0 114186 Candidatus Carsonella ruddii 1 24 1 37 genus 1495768 0 Candidatus Evansia muelleri 37 1 species 1495769 0 Candidatus Portiera 13 2 1 1 genus 0 235572 species 91844 0 Candidatus Portiera aleyrodidarum 1 12 1 genus 374 0 2745 Halomonas 11774 15 1 684 Halomonas chromatireducens 507626 0 species 0 2609666 no rank 8 5727 0 1949203 species 1 489 Halomonas sp. 'Soap Lake #6' species 1504981 0 Halomonas sp. KO116 775 1 0 2136172 species 1 1540 Halomonas sp. SF2003 species 1118153 0 Halomonas sp. GFAJ-1 1 263 Halomonas sp. 1513 1289 1 species 1883416 0 1610576 0 species 652 1 Halomonas sp. R57-5 Halomonas sp. GT 230 1 species 1971364 0 1962264 0 species 489 1 Halomonas sp. 'Soap Lake #7' species 115561 0 Halomonas hydrothermalis 1 1025 1 710 Halomonas aestuarii 1897729 0 species 1 509 Halomonas huangheensis 0 1178482 species Halomonas campaniensis 1 260 species 0 213554 Halomonas beimenensis 2485 1 species 0 475662 1 genus 5 0 204286 Cobetia 1023 2 1018 1 Cobetia marina 28258 0 species 0 504090 1 genus 13 3 2348 Kushneria species 698828 0 Kushneria konosiri 1 1071 1264 1 Kushneria marisflavi 0 157779 species Salinicola 2 1004 1 genus 21 0 404432 983 1 Salinicola tamaricis 0 1771309 species Chromohalobacter 2 1054 genus 1 1 42054 0 Chromohalobacter salexigens 1 1053 species 0 158080 0 135620 1 family 217 6801 12 Oceanospirillaceae 2 2462 Marinobacterium 48075 0 genus 1 904 1 1558 Marinobacterium aestuarii 0 1821621 species genus 0 188907 610 1 610 1 Oleispira antarctica 0 188908 species 1537406 0 3 genus 1 338 2 Bacterioplanes 335 1 Bacterioplanes sanyensis 1249553 0 species Marinomonas 4 2358 5 genus 1 28253 0 species 0 936476 Marinomonas posidonica 1184 1 632 1 Marinomonas mediterranea 0 119864 species 1 537 196814 0 no rank 0 400668 species 1 537 Marinomonas sp. MWYL1 1 genus 1 187492 0 Thalassolituus 816 2 0 187493 species 1 815 Thalassolituus oleivorans family 0 224379 2 820 2 820 Hahella 158481 0 3 genus 1 species 0 158327 Hahella chejuensis 817 1 Oleiphilaceae 517 2 family 1 7 191033 0 1 510 genus 141450 0 species 0 141451 Oleiphilus messinensis 510 1 1 family 4 0 1920240 Kangiellaceae 6 1127 Kangiella 1123 5 genus 1 10 261963 0 Kangiella sediminilitoris 373 1 species 1144748 0 0 261964 species 161 1 Kangiella koreensis Kangiella geojedonensis 1 145 species 0 914150 1 434 Kangiella profundi 1561924 0 species 13 family 1 224372 0 Alcanivoracaceae 4044 9 Alcanivorax 3325 6 genus 1 63 59753 0 Alcanivorax dieselolei 1 637 species 0 285091 1 374 Alcanivorax borkumensis 59754 0 species 0 1306787 species 1 1304 Alcanivorax pacificus 475 1 Alcanivorax xenomutans 1094342 0 species no rank 2638842 0 1 472 1 472 Alcanivorax sp. NBRC 101098 0 1113728 species 2025617 0 genus 1 1 706 2 Ketobacter 705 1 Ketobacter alkanivorans 1917421 0 species order 0 1240482 1146 5 576 family 1 1240483 0 Orbaceae 5 1146 2 199 Frischella 1335631 0 genus 1 10 189 1 Frischella perrara 0 1267021 species 22 genus 1 1193503 0 Gilliamella 371 2 349 1 Gilliamella apicola 1196095 0 species 118969 0 9 order 1 6863 19 Legionellales 14 1 family 0 118968 Coxiellaceae 858 4 776 0 genus 547 2 0 2676648 no rank 1 31 0 325775 species 1 31 Coxiella endosymbiont of Amblyomma americanum 516 1 Coxiella burnetii 777 0 species 134284 0 no rank 297 1 1 297 Coxiella-like endosymbiont 1592897 0 species 9 family 1 444 0 Legionellaceae 14 5996 Legionella 5918 12 1 genus 11 0 445 99 1 Legionella lansingensis 0 45067 species Legionella oakridgensis 109 1 species 0 29423 30 1 Legionella endosymbiont of Polyplax serrata 0 2005262 species 0 96230 species 1 95 Legionella fallonii Legionella clemsonensis 185 1 species 1867846 0 species 446 0 Legionella pneumophila 4099 1 450 0 species 156 1 Legionella longbeachae Legionella waltersii 1 71 species 66969 0 217 1 Legionella spiritensis 452 0 species 147 1 Legionella hackeliae 0 449 species 28087 0 species 699 1 Legionella sainthelensi 69 1 465 0 genus species 0 451 Tatlockia micdadei 1 69 1 order 279 0 135613 Chromatiales 24045 52 0 255526 1 family 8 4 1447 Halothiobacillaceae 0 109262 1 1 genus 1439 3 Halothiobacillus 1 604 no rank 0 2636392 Halothiobacillus sp. LS2 604 1 species 0 1860122 Halothiobacillus neapolitanus 1 834 species 927 0 2 954 451214 0 no rank Thiohalobacter 954 2 24 1 genus 0 1273155 585455 0 species 1 930 Thiohalobacter thiocyanaticus family 1 135 72276 0 Ectothiorhodospiraceae 9623 18 119 1 genus 0 106633 Thioalkalivibrio 4817 6 Thioalkalivibrio versutus 1275 1 species 106634 0 no rank 0 2621013 759 1 759 1 Thioalkalivibrio sp. K90mix 0 396595 species species 0 186931 Thioalkalivibrio nitratireducens 928 1 1033854 0 species 1 1180 Thioalkalivibrio sulfidiphilus 556 1 Thioalkalivibrio paradoxus 108010 0 species 1 genus 3 0 133193 Alkalilimnicola 1318 2 Alkalilimnicola ehrlichii 1315 1 species 0 351052 14 1 genus 0 85108 Halorhodospira 2 778 1 764 Halorhodospira halophila 1053 0 species Spiribacter 3 1248 genus 1 8 1335745 0 species 1335746 0 Spiribacter salinus 1 306 Spiribacter curvatus 1 934 species 1335757 0 1765964 0 3 genus 1 347 2 Acidihalobacter 344 1 Acidihalobacter prosperus 0 160660 species genus 1 7 1051 0 Ectothiorhodospira 2 980 2684909 0 no rank 1 973 Ectothiorhodospira sp. BSL-9 1 973 species 1442136 0 Granulosicoccaceae 3 1651 2 family 1 449719 0 2 1649 Granulosicoccus 437504 0 4 genus 1 0 437505 species 1 1645 Granulosicoccus antarcticus 0 1046 1 family 125 18 8844 Chromatiaceae 920 1 0 82569 no rank species 0 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a 1 920 13724 0 genus 1 15 1249 2 Thiocystis Thiocystis violascens 1234 1 species 0 73141 Allochromatium 1125 2 genus 1 3 85072 0 Allochromatium vinosum 1122 1 species 0 1049 0 156885 1 genus 10 677 2 Thioflavicoccus 80679 0 species 667 1 Thioflavicoccus mobilis 38 genus 1 1980513 0 Candidatus Nitrosoglobus 2 171 species 0 1630141 Candidatus Nitrosoglobus terrae 133 1 Nitrosococcus 1179 4 6 1 genus 0 1227 168 1 Nitrosococcus watsonii 0 473531 species Nitrosococcus oceani 1 639 species 1229 0 Nitrosococcus halophilus 366 1 species 133539 0 Thiodictyon 2520 2 1 genus 9 0 53392 1 2511 Candidatus Thiodictyon syntrophicum 1166950 0 species 878 2 Marichromatium 0 85076 1 genus 9 Marichromatium purpuratum 869 1 species 0 37487 Wenzhouxiangellaceae 855 3 family 1 29 1676141 0 826 2 Wenzhouxiangella 1676142 0 genus 1 24 species 0 1579979 Wenzhouxiangella marina 1 802 1 family 1 1738654 0 Woeseiaceae 3 392 5 1 genus 0 1738655 Woeseia 391 2 1 386 Woeseia oceani 0 1548547 species order 1 27 135618 0 Methylococcales 4145 12 Methylococcaceae 11 4118 1 family 53 0 403 762296 0 genus 1 1 472 2 Methylovulum 0 1704499 species 1 471 Methylovulum psychrotolerans 39773 0 genus 1 533 Methylomicrobium alcaliphilum 533 1 species 271065 0 genus 1 30 413 0 Methylococcus 2 863 833 1 Methylococcus capsulatus 0 414 species 5 2197 Methylomonas 0 416 1 genus 40 species 0 421 Methylomonas methanica 1 357 687 1 Methylomonas koyamae 702114 0 species 1538553 0 species 389 1 Methylomonas denitrificans 1 724 0 2608980 no rank 0 1727196 species 724 1 Methylomonas sp. DH-1 Betaproteobacteria 347 302556 class 1 652 28216 0 80840 0 order 1 2583 238934 232 Burkholderiales 556 family 1 119060 0 Burkholderiaceae 83 93067 1028 1 0 1827195 genus 1028 1 Burkholderia sp. RPE64 758793 0 species 11592 9 Cupriavidus 0 106589 1 genus 413 Cupriavidus gilardii 1288 1 species 0 82541 no rank 2640874 0 2 3198 Cupriavidus sp. USMAA2-4 1761 1 species 0 876364 Cupriavidus sp. USMAHM13 1 1437 species 1389192 0 Cupriavidus pinatubonensis 907 1 species 248026 0 species 0 367825 Cupriavidus sp. USMAA1020 1 1625 Cupriavidus necator 1 2132 species 106590 0 species 68895 0 Cupriavidus basilensis 1 1133 0 119219 species 896 1 Cupriavidus metallidurans 1 532 genus 0 2571159 Paraburkholderia rhizoxinica 532 1 species 0 412963 genus 1 2046 32008 0 Burkholderia 49129 41 111527 0 species group 4841 7 species 1637841 0 Burkholderia sp. MSMB0852 1 540 species 0 13373 Burkholderia mallei 472 1 0 1637831 species 309 1 Burkholderia sp. MSMB617WGS species 1637837 0 Burkholderia sp. MSMB0266 350 1 Burkholderia oklahomensis 1 811 species 0 342113 species 57975 0 Burkholderia thailandensis 1 1037 28450 0 species 1 1322 Burkholderia pseudomallei Burkholderia glumae 1804 1 species 337 0 1 1204 Burkholderia plantarii 41899 0 species species 28095 0 Burkholderia gladioli 1 2531 19 26625 87882 0 species group 3656 1 Burkholderia cepacia 292 0 species 1503054 0 species 1 716 Burkholderia stagnalis species 0 1503055 Burkholderia territorii 409 1 Burkholderia pseudomultivorans 556 1 species 0 1207504 0 482957 species 6579 1 Burkholderia lata 95486 0 species 1 2822 Burkholderia cenocepacia 1 382 Burkholderia pyrrocinia 60550 0 species 0 488447 species 1 681 Burkholderia contaminans 95485 0 species 837 1 Burkholderia stabilis Burkholderia diffusa 1 722 species 0 488732 Burkholderia seminalis 1 454 species 488731 0 1807 1 Burkholderia vietnamiensis 60552 0 species 0 101571 species 1 2026 Burkholderia ubonensis 488446 0 species 409 1 Burkholderia latens Burkholderia ambifaria 958 1 species 152480 0 1 1677 Burkholderia multivorans 87883 0 species 559 1 [Pseudomonas] mesoacidophila 265293 0 species species 488729 0 Burkholderia metallica 1001 1 374 1 Burkholderia dolosa 0 152500 species 2613784 0 no rank 11 10078 1 432 Burkholderia sp. Bp7605 1740163 0 species 1 1043 Burkholderia sp. RPE67 0 758796 species 598 1 Burkholderia sp. 2002721687 1468409 0 species species 1097668 0 Burkholderia sp. YI23 1117 1 0 640510 species 1 1666 Burkholderia sp. CCGE1001 species 1795874 0 Burkholderia sp. PAMC 28687 498 1 1740162 0 species 577 1 Burkholderia sp. Bp5365 416344 0 species 1 1230 Burkholderia sp. KJ006 0 640512 species 1297 1 Burkholderia sp. CCGE1003 species 1795043 0 Burkholderia sp. PAMC 26561 1 502 Burkholderia sp. HB1 1118 1 species 1678678 0 151 genus 1 48736 0 Ralstonia 9334 5 0 105219 species 1062 1 Ralstonia mannitolilytica 4581 1 Ralstonia solanacearum 305 0 species species 0 190721 Ralstonia insidiosa 1406 1 Ralstonia pickettii 2134 1 species 329 0 1 genus 138 0 93217 Pandoraea 10 6332 736 1 Pandoraea apista 0 93218 species 0 93222 species 1 576 Pandoraea sputorum 1323 1 Pandoraea pnomenusa 93220 0 species Pandoraea oxalativorans 657 1 species 573737 0 1 497 Pandoraea thiooxydans 445709 0 species 0 656179 species 531 1 Pandoraea faecigallinarum Pandoraea vervacti 629 1 species 656178 0 0 93219 species 1 593 Pandoraea norimbergensis 652 1 Pandoraea pulmonicola 0 93221 species 1822464 0 genus 1 208 12 12824 Paraburkholderia species 0 75105 Paraburkholderia caribensis 1339 1 602 1 no rank 2615204 0 species 1926494 0 Paraburkholderia sp. SOS3 602 1 1 984 Paraburkholderia xenovorans 0 36873 species Paraburkholderia phytofirmans 1294 1 species 261302 0 species 0 252970 Paraburkholderia phenoliruptrix 1 1030 1770 1 Paraburkholderia aromaticivorans 0 2026199 species 1 700 Paraburkholderia fungorum 134537 0 species species 169430 0 Paraburkholderia hospita 2340 1 0 948107 species 1 650 Paraburkholderia sprentiae 1008 1 Paraburkholderia terrae 0 311230 species 899 1 Paraburkholderia phymatum 148447 0 species 1740 3 0 44013 genus 172 1 Polynucleobacter duraquae 0 1835254 species 576610 0 species 438 1 Polynucleobacter necessarius Polynucleobacter asymbioticus 1130 1 species 0 576611 136 family 1 75682 0 Oxalobacteraceae 29876 29 77 1 genus 0 29580 Janthinobacterium 7 6101 no rank 0 2610881 3084 4 389 1 Janthinobacterium sp. Marseille 0 375286 species species 1236179 0 Janthinobacterium sp. B9-8 321 1 1644131 0 species 1513 1 Janthinobacterium sp. 1_2014MBL_MicDiv 1 861 Janthinobacterium sp. LM6 0 1938606 species species 0 368607 Janthinobacterium svalbardensis 1658 1 Janthinobacterium agaricidamnosum 1 1282 species 55508 0 963 0 genus 1 275 7749 6 Herbaspirillum species 0 80842 Herbaspirillum rubrisubalbicans 1 1279 1 1726 Herbaspirillum frisingense 92645 0 species 0 341045 species 1 1532 Herbaspirillum hiltneri no rank 2624150 0 1 942 942 1 Herbaspirillum sp. meg3 0 2025949 species Herbaspirillum seropedicae 1995 1 species 964 0 917 3 Herminiimonas 0 303379 1 genus 11 Herminiimonas arsenicoxydans 1 528 species 204773 0 0 1809410 species 1 378 Herminiimonas arsenitoxidans 2 3963 Oxalobacter 0 846 1 genus 5 species 0 847 Oxalobacter formigenes 1 3958 59 genus 1 202907 0 Collimonas 4 4458 0 279058 species 1896 1 Collimonas arenae 0 158899 species 1 1496 Collimonas fungivorans species 279113 0 Collimonas pratensis 1 1007 6552 6 Massilia 0 149698 1 genus 118 2072590 0 species 1 1454 Massilia sp. ZMN-3 1144 1 Massilia putida 0 1141883 species 0 2609279 no rank 2 3086 Massilia sp. NR 4-1 1 1570 species 1678028 0 0 1707785 species 1516 1 Massilia sp. WG5 species 2045208 0 Massilia sp. B2 750 1 761 family 1 80864 0 Comamonadaceae 58171 59 219181 0 25 genus 1 2081 3 Ottowia 0 2645081 no rank 744 1 Ottowia sp. oral taxon 894 1 744 species 0 1658672 1 1312 Ottowia sp. KADR8-3 0 2109914 species 2490452 0 genus 2 1048 0 1458425 species 545 1 Comamonadaceae bacterium A1 1 503 Comamonadaceae bacterium B1 0 1458426 species genus 1 6 364316 0 Verminephrobacter 2 898 364317 0 species 1 892 Verminephrobacter eiseniae 1081 2 Melaminivora 1649468 0 16 genus 1 1065 1 no rank 2641902 0 species 2109913 0 Melaminivora sp. SC2-9 1 1065 2 genus 1 1436289 0 Candidatus Symbiobacter 2 417 415 1 Candidatus Symbiobacter mobilis 1436290 0 species 1 1193 0 2678886 genus Melaminivora sp. SC2-7 1193 1 species 0 2116657 Rhodoferax 5 3802 1 genus 125 0 28065 species 192843 0 Rhodoferax ferrireducens 1 769 0 1484693 species 878 1 Rhodoferax saidenbachensis species 0 1842727 Rhodoferax koreense 1287 1 81479 0 species 743 1 Rhodoferax antarcticus 0 201096 7 1 genus 1876 2 Alicycliphilus 0 179636 species 1 1869 Alicycliphilus denitrificans Comamonas 4979 4 39 1 genus 0 283 Comamonas testosteroni 3061 1 species 0 285 Comamonas kerstersii 743 1 species 225992 0 0 1082851 species 1 1136 Comamonas serinivorans 2068 3 Polaromonas 0 52972 23 1 genus species 0 216465 Polaromonas naphthalenivorans 1 1293 1 752 0 2638319 no rank species 296591 0 Polaromonas sp. JS666 1 752 Acidovorax 9 9696 455 genus 1 12916 0 Acidovorax avenae 1113 1 species 80867 0 848 1 Acidovorax sp. NA3 553814 0 species 5231 4 2684926 0 no rank 1925 1 Acidovorax sp. RAC01 1842533 0 species 358220 0 species 1 1388 Acidovorax sp. KKS102 species 0 232721 Acidovorax sp. JS42 1 1158 Acidovorax sp. T1 1 760 species 0 1858609 Acidovorax ebreus 1 827 species 0 721785 80869 0 species 1222 1 Acidovorax citrulli Hydrogenophaga 4 3296 genus 1 38 47420 0 Hydrogenophaga crassostreae 1177 1 species 0 1763535 2081 2 0 2610897 no rank Hydrogenophaga sp. RAC07 1 886 species 0 1842537 species 795665 0 Hydrogenophaga sp. PBC 1 1195 174951 0 8 genus 1 2863 2 Ramlibacter species 0 94132 Ramlibacter tataouinensis 1 2855 Diaphorobacter 2 1174 1 genus 1 0 238749 1173 1 Diaphorobacter polyhydroxybutyrativorans 0 1546149 species 1340 2 Simplicispira 0 352450 2 1 genus 1338 1 Simplicispira sp. SC1-8 0 2109915 species 665874 0 genus 1 1 3 1476 Limnohabitans no rank 0 2626134 2 1475 Limnohabitans sp. 63ED37-2 482 1 species 0 1678128 species 0 1678129 Limnohabitans sp. 103DPR2 993 1 1 genus 348 0 80865 Delftia 10579 5 0 180282 species 1 2281 Delftia tsuruhatensis 3101 1 Delftia acidovorans 0 80866 species 4849 2 0 2613839 no rank 2332 1 Delftia sp. HK171 1920191 0 species 1 2517 Delftia sp. Cs1-4 742013 0 species 7543 5 Variovorax 34072 0 genus 1 179 0 34073 species 3425 1 Variovorax paradoxus 1574 1 Variovorax boronicumulans 436515 0 species 0 663243 no rank 2 2365 Variovorax sp. PAMC 28711 1 810 species 1795631 0 species 2126319 0 Variovorax sp. PMC12 1555 1 no rank 224471 0 17 12885 2 1453 Thiomonas 32012 0 genus 1 22 species 926 0 Thiomonas intermedia 1431 1 25 1 genus 0 212743 Rhizobacter 1425 2 1400 1 Rhizobacter gummiphilus 0 946333 species 1505 2 Roseateles 0 93681 17 1 genus Roseateles depolymerans 1 1488 species 0 76731 1 1283 [Polyangium] brachysporum 0 413882 species Paucibacter 1073 2 26 genus 1 318147 0 no rank 2642959 0 1 1047 1047 1 Paucibacter sp. KCTC 42545 1768242 0 species 841 2 Methylibium 0 316612 14 1 genus 1 827 Methylibium petroleiphilum 105560 0 species Leptothrix 2 1333 1 genus 23 0 88 Leptothrix cholodnii 1 1310 species 0 34029 genus 1 65 65047 0 Mitsuaria 2 1539 0 2648776 no rank 1474 1 1658665 0 species 1 1474 Mitsuaria sp. 7 0 28067 1 genus 31 2 2433 Rubrivivax species 0 28068 Rubrivivax gelatinosus 1 2402 2144 2 no rank 0 80841 Burkholderiales bacterium GJ-E10 1 594 species 0 1469502 Burkholderiales bacterium YL45 1550 1 species 1834205 0 40208 41 Alcaligenaceae 0 506 1 family 341 1265 2 Castellaniella 0 359336 1 genus 16 75697 0 species 1 1249 Castellaniella defragrans 1764 2 Alcaligenes 0 507 1 genus 8 species 0 511 Alcaligenes faecalis 1 1756 17907 17 Bordetella 0 517 1 genus 584 1 1460 Bordetella pseudohinzii 0 1331258 species species 103855 0 Bordetella hinzii 1141 1 0 1416803 species 800 1 Bordetella genomosp. 9 2630031 0 no rank 922 1 922 1 Bordetella sp. H567 1697043 0 species species 0 521 Bordetella avium 1 614 1 1031 Bordetella genomosp. 13 0 463040 species Bordetella trematum 1607 1 species 0 123899 1163 1 Bordetella petrii 0 94624 species 918 1 Bordetella genomosp. 8 1416806 0 species species 0 463025 Bordetella bronchialis 1121 1 608 1 Bordetella pertussis 520 0 species species 463014 0 Bordetella flabilis 1 1344 1 1222 Bordetella parapertussis 0 519 species species 0 518 Bordetella bronchiseptica 1921 1 species 0 35814 Bordetella holmesii 1 409 1042 1 Bordetella genomosp. 6 0 463024 species 29574 0 genus 1 2 3 780 Taylorella species 29575 0 Taylorella equigenitalis 310 1 468 1 Taylorella asinigenitalis 0 84590 species 1921582 0 10 genus 1 2 1446 Orrella 1851544 0 species 1 1436 Orrella dioscoreae 431 1 0 1472344 genus 1472345 0 species 431 1 Basilea psittacipulmonis 6 13850 Achromobacter 222 0 489 genus 1 Achromobacter denitrificans 1 2559 species 32002 0 1 2530 Achromobacter spanius 0 217203 species 1 5811 Achromobacter xylosoxidans 85698 0 species Achromobacter insolitus 1225 1 species 0 217204 2626865 0 no rank 1236 1 species 0 1758194 Achromobacter sp. AONIH1 1236 1 0 305976 1 genus 3 2 427 Pusillimonas 0 2640016 no rank 1 424 1 424 Pusillimonas sp. T7-7 0 1007105 species 1 784 0 90243 genus 90245 0 species 784 1 Oligella urethralis Advenella 1001 3 1 genus 1 290425 0 1 261 Advenella kashmirensis 0 310575 species species 302406 0 Advenella mimigardefordensis 739 1 212 1 genus 1100891 0 1 212 Paenalcaligenes hominis 0 643674 species 206389 0 414 order 1 17370 22 Rhodocyclales 419 family 1 2008794 0 Zoogloeaceae 11278 12 0 12960 138 1 genus 5 4137 Azoarcus no rank 2629479 0 2 2215 species 748247 0 Azoarcus sp. KH32C 1 988 species 0 198107 Azoarcus sp. CIB 1227 1 species 0 2067960 Azoarcus sp. SY39 1 726 Azoarcus olearius 1058 1 species 418699 0 111 1 genus 0 33057 Thauera 6722 6 59405 0 species 1 1247 Thauera aromatica 2730 2 0 2609274 no rank Thauera sp. MZ1T 1 1204 species 0 85643 0 2005884 species 1526 1 Thauera sp. K11 species 0 1134435 Thauera humireducens 1845 1 0 96773 species 1 789 Thauera chlorobenzoica Azonexaceae 3 1102 family 1 9 2008795 0 Dechloromonas 2 1093 1 genus 6 0 73029 259537 0 species 1 1087 Dechloromonas aromatica 75787 0 family 1 122 4576 6 Rhodocyclaceae 2 2435 Aromatoleum 551759 0 genus 1 38 Aromatoleum aromaticum 1 2397 species 551760 0 610 1 75788 0 no rank Rhodocyclaceae bacterium 1 610 species 1898103 0 2 1409 Azospira 0 146937 1 genus 20 146939 0 species 1 1389 Azospira oryzae 1 order 102 0 32003 Nitrosomonadales 15463 43 5 2743 Sterolibacteriaceae 0 2008793 56 1 family 0 378210 1 genus 7 979 2 Methyloversatilis 0 2639971 no rank 1 972 species 0 1842540 Methyloversatilis sp. RAC08 972 1 2 1708 Sulfuritalea 1054211 0 genus 1 12 species 748811 0 Sulfuritalea hydrogenivorans 1 1696 2772226 0 family 1544 4 2 636 Sulfuricella 935200 0 genus 1 13 649841 0 species 623 1 Sulfuricella denitrificans 1 genus 21 0 1778653 Sulfuriferula 908 2 887 1 no rank 0 2637784 Sulfuriferula sp. AH1 887 1 species 1985873 0 206379 0 14 family 1 12 4103 Nitrosomonadaceae 35798 0 genus 1 5 4 989 Nitrosospira Nitrosospira lacus 1 444 species 0 1288494 1231 0 species 1 193 Nitrosospira multiformis Nitrosospira briensis 347 1 species 0 35799 20 1 genus 0 914 Nitrosomonas 7 3100 species 0 916 Nitrosomonas eutropha 1 198 915 0 species 519 1 Nitrosomonas europaea 524 1 Nitrosomonas communis 44574 0 species species 0 44577 Nitrosomonas ureae 1 752 2 1087 no rank 2609265 0 0 153948 species 1 783 Nitrosomonas sp. AL212 species 261292 0 Nitrosomonas sp. Is79A3 1 304 32011 0 family 1 16 3782 13 Methylophilaceae Methylotenera 3 1005 3 1 genus 0 359407 0 1055487 species 466 1 Methylotenera versatilis 1 536 Methylotenera mobilis 359408 0 species genus 1 13 81682 0 Methylovorus 3 1388 no rank 0 2634027 1 697 Methylovorus sp. MP688 697 1 species 0 887061 0 266009 species 678 1 Methylovorus glucosotrophus Methylobacillus 2 491 8 genus 1 404 0 Methylobacillus flagellatus 1 483 species 405 0 16 0 genus 1 9 394 2 Methylophilus 0 2630143 no rank 1 385 Methylophilus sp. TWE2 385 1 species 1662285 0 genus 1679002 0 2 488 species 1581557 0 Candidatus Methylopumilus planktonicus 1 122 species 0 1581680 Candidatus Methylopumilus turicensis 366 1 Thiobacillaceae 785 3 1 family 18 0 2008790 Thiobacillus 767 2 genus 1 6 919 0 species 0 36861 Thiobacillus denitrificans 1 761 69 family 1 90627 0 Gallionellaceae 5 2404 314343 0 genus 1 5 2 629 Sideroxydans 0 63745 species 1 624 Sideroxydans lithotrophicus Gallionella 1706 2 14 genus 1 96 0 0 370405 species 1 1692 Gallionella capsiferriformans 36 27337 Neisseriales 0 206351 1091 1 order Neisseriaceae 22 14322 family 1 290 481 0 Neisseria 12 10553 526 genus 1 482 0 1 603 Neisseria sp. 10023 1853278 0 species 1 471 Neisseria elongata 495 0 species 272 1 Neisseria weaveri 28091 0 species species 488 0 Neisseria mucosa 1412 1 326523 0 species 1 789 Neisseria zoodegmatis 1 2070 Neisseria meningitidis 0 487 species 485 0 species 315 1 Neisseria gonorrhoeae species 0 490 Neisseria sicca 1442 1 2 1899 no rank 2623750 0 776 1 Neisseria sp. KEM232 0 655307 species 1 1123 Neisseria sp. 10022 0 1853276 species 754 1 Neisseria lactamica 0 486 species 10 1 genus 0 59 Vitreoscilla 1170 3 0 63 species 1 565 Vitreoscilla filiformis no rank 2627922 0 595 1 Vitreoscilla sp. C1 1 595 species 0 96942 Snodgrassella 2 518 genus 1 1 1193515 0 517 1 Snodgrassella alvi 1196083 0 species 2 832 Eikenella 0 538 3 1 genus 829 1 Eikenella corrodens 539 0 species 0 71 genus 479 1 1 479 Simonsiella muelleri 0 72 species no rank 0 421605 1 480 2052837 0 species 1 480 Neisseriaceae bacterium DSM 100970 Chromobacteriaceae 13 11924 185 family 1 1499392 0 0 885864 1 genus 9 853 2 Jeongeupia 1 844 2619593 0 no rank Jeongeupia sp. USM3 1 844 species 0 1906741 genus 1 6 187 0 Aquaspirillum 2 1008 1 1002 2620219 0 no rank Aquaspirillum sp. LM1 1002 1 species 1938604 0 6461 4 90153 0 no rank Chromobacterium 6461 4 185 1 genus 0 535 Chromobacterium violaceum 1 1746 species 0 536 2861 1 Chromobacterium vaccinii 1108595 0 species 2641838 0 no rank 1669 1 species 0 2059672 Chromobacterium sp. ATCC 53434 1669 1 genus 1 29 168470 0 Laribacter 1382 2 1353 1 Laribacter hongkongensis 0 168471 species Pseudogulbenkiania 2 2035 58 genus 1 568394 0 2642558 0 no rank 1 1977 1 1977 Pseudogulbenkiania sp. NH8B 748280 0 species 0 33809 no rank 1421 2 Betaproteobacteria bacterium GR16-43 1 813 species 0 1904640 1 608 beta proteobacterium CB 0 543913 species 0 119066 no rank 1379 11 25 1 genus 0 1381133 0 669502 species 1 25 Candidatus Profftella armatura 441 6 Kinetoplastibacterium 0 33055 1 genus 5 1 43 Candidatus Kinetoplastibacterium galatii 0 994695 species species 33056 0 Candidatus Kinetoplastibacterium crithidii 119 1 0 233181 species 1 87 Kinetoplastibacterium blastocrithidii Candidatus Kinetoplastibacterium oncopeltii 54 1 species 0 994696 133 1 Candidatus Kinetoplastibacterium desouzaii 994692 0 species Candidatus Accumulibacter 2 905 13 genus 1 327159 0 species 0 327160 Candidatus Accumulibacter phosphatis 1 892 189384 0 genus 1 4 species 0 189385 Candidatus Tremblaya princeps 4 1 genus 1301080 0 1 4 0 1160784 species 4 1 Candidatus Nasuia deltocephalinicola 68525 0 subphylum 142914 194 186 class 1 28221 0 Deltaproteobacteria 107564 124 676 3 order 213113 0 117942 0 35 family 1 3 676 Desulfurellaceae 1 272 genus 0 33001 1 272 Desulfurella acetivorans 0 33002 species genus 0 84404 1 369 1 369 Hippea maritima 0 84405 species 627 1 order 0 29 Myxococcales 38 38737 3 1989 suborder 0 224462 Kofleriaceae 1989 3 1 family 7 0 224464 1 genus 10 0 162027 Haliangium 1982 2 species 80816 0 Haliangium ochraceum 1 1972 8 6595 0 80812 suborder 3 1100 Sandaracinaceae 0 1055686 1 family 29 genus 1 21 1055688 0 Sandaracinus 1071 2 927083 0 species 1 1050 Sandaracinus amylolyticus 5 5495 Polyangiaceae 49 0 family 1 27 72 1 genus 0 39643 Sorangium 2 4116 1 4044 Sorangium cellulosum 56 0 species genus 1 5 50 0 Chondromyces 2 1352 1347 1 Chondromyces crocatus 0 52 species suborder 80811 0 26 29526 3 618 Vulgatibacteraceae 0 1524213 1 family 17 1524214 0 14 genus 1 601 2 Vulgatibacter Vulgatibacter incomptus 1 587 species 1391653 0 6172 5 Anaeromyxobacteraceae 1524215 0 68 family 1 Anaeromyxobacter 4 6104 1 genus 90 0 161492 no rank 0 2620896 2 3182 species 404589 0 Anaeromyxobacter sp. Fw109-5 1 1714 species 0 447217 Anaeromyxobacter sp. K 1 1468 2832 1 Anaeromyxobacter dehalogenans 0 161493 species family 1 86 31 0 Myxococcaceae 14735 9 32 0 295 genus 1 5 9666 Myxococcus 83455 0 species 1 1408 Myxococcus stipitatus 0 33 species 4593 1 Myxococcus fulvus 34 0 species 1849 1 Myxococcus xanthus species 1297742 0 Myxococcus hansupus 1 1521 0 83461 1 genus 69 3 4983 Corallococcus 2416 1 Myxococcus macrosporus 0 35 species 0 184914 species 1 2498 Corallococcus coralloides family 1 114 39 0 Archangiaceae 8001 9 0 42 1 genus 13 1763 2 Cystobacter 43 0 species 1750 1 Cystobacter fuscus genus 1 5 47 0 Archangium 2134 2 2129 1 Archangium gephyra 48 0 species 1 genus 5 0 44 Melittangium 2562 2 0 83453 species 2557 1 Melittangium boletus 2 1428 Stigmatella 0 40 12 1 genus 0 41 species 1 1416 Stigmatella aurantiaca 0 213115 1 order 302 29826 26 Desulfovibrionales 1 family 1 0 213117 Desulfohalobiaceae 481 3 0 45662 3 1 genus 480 2 Desulfohalobium 45663 0 species 1 477 Desulfohalobium retbaense Desulfomicrobiaceae 2285 4 family 1 77 213116 0 898 0 26 genus 1 3 2208 Desulfomicrobium 0 899 species 1106 1 Desulfomicrobium baculatum 1076 1 Desulfomicrobium orale 0 132132 species 18 26758 Desulfovibrionaceae 0 194924 142 1 family 5021 4 Pseudodesulfovibrio 2035811 0 40 genus 1 species 0 57320 Pseudodesulfovibrio profundus 1 576 Pseudodesulfovibrio aespoeensis 1896 1 species 182210 0 1716143 0 species 2509 1 Pseudodesulfovibrio indicus genus 2794998 0 1276 1 species 0 880 Desulfovibrio salexigens 1 1276 genus 2582840 0 1146 1 1146 1 Desulfovibrio africanus 0 873 species 273 2 Lawsonia 0 41707 1 genus 2 Lawsonia intracellularis 1 271 species 29546 0 9 18900 Desulfovibrio 0 872 1 genus 158 44742 0 species 1833 1 Desulfovibrio fairfieldensis 1 2455 Desulfovibrio magneticus 184917 0 species 0 2593640 no rank 939 1 species 631220 0 Desulfovibrio sp. G11 1 939 4324 1 Desulfovibrio vulgaris 881 0 species 0 876 species 1 3787 Desulfovibrio desulfuricans Desulfovibrio alaskensis 916 1 species 0 58180 species 0 901 Desulfovibrio piger 3895 1 Candidatus Desulfovibrio trichonymphae 593 1 species 1725232 0 16 order 1 453227 0 Desulfarculales 1776 4 3 1760 Desulfarculaceae 0 453228 1 family 41 Desulfarculus 2 1719 11 genus 1 453229 0 Desulfarculus baarsii 1 1708 species 0 453230 Desulfuromonadales 24511 24 329 1 order 0 69541 15633 14 Geobacteraceae 213422 0 127 family 1 0 392332 2 1 genus 2 1188 Geoalkalibacter Geoalkalibacter subterraneus 1186 1 species 483547 0 11 14318 Geobacter 0 28231 1 genus 171 1181 1 Geobacter uraniireducens 351604 0 species 1203471 0 species 737 1 Geobacter daltonii Geobacter sulfurreducens 1 1014 species 35554 0 species 1340425 0 Geobacter anodireducens 1095 1 1770 1 Geobacter pickeringii 345632 0 species species 0 28232 Geobacter metallireducens 1382 1 Geobacter lovleyi 1 1363 species 0 313985 1 996 Geobacter bemidjiensis 225194 0 species 2627627 0 no rank 2 4609 Geobacter sp. M18 1772 1 species 443143 0 443144 0 species 2837 1 Geobacter sp. M21 9 8549 Desulfuromonadaceae 0 213421 1 family 169 1 genus 19 0 890 Desulfuromonas 2784 3 2614637 0 no rank 1 1774 1823759 0 species 1774 1 Desulfuromonas sp. DDH964 0 1603606 species 991 1 Desulfuromonas soudanensis Pelobacter 5596 5 1 genus 977 0 18 Pelobacter acetylenicus 851 1 species 0 29542 no rank 0 2620299 1 447 Pelobacter sp. SFB93 447 1 species 0 1842532 2183 1 Pelobacter carbinolicus 0 19 species Pelobacter propionicus 1138 1 species 0 29543 9293 18 Desulfobacterales 213118 0 order 1 41 4860 9 Desulfobacteraceae 0 213119 1 family 28 0 2295 14 1 genus 2 912 Desulfobacterium 0 2296 species 1 898 Desulfobacterium autotrophicum Desulfococcus 2413 3 1 genus 10 0 896 608 1 Desulfococcus oleovorans 181663 0 species species 897 0 Desulfococcus multivorans 1 1795 408 1 28222 0 genus species 28223 0 Desulfobacula toluolica 1 408 1099 2 Desulfatibacillum 0 218207 1 genus 4 species 0 259354 Desulfatibacillum alkenivorans 1095 1 Desulfobulbaceae 4392 8 14 family 1 213121 0 0 893 2 1 genus 2 1784 Desulfobulbus 1 1782 Desulfobulbus sp. ORNL 1986146 0 species Desulfurivibrio 823 2 1 genus 8 0 427922 0 427923 species 815 1 Desulfurivibrio alkaliphilus 109168 0 genus 1 1009 species 84980 0 Desulfotalea psychrophila 1009 1 Desulfocapsa 762 2 genus 1 10 53318 0 species 0 65555 Desulfocapsa sulfexigens 1 752 order 1 34 213462 0 Syntrophobacterales 10 2559 3 876 Syntrophobacteraceae 213465 0 family 1 39 1 genus 5 0 29526 Syntrophobacter 837 2 species 0 119484 Syntrophobacter fumaroxidans 1 832 Syntrophaceae 1649 6 16 1 family 0 213468 genus 2357 0 1 557 Desulfomonile tiedjei 1 557 species 0 2358 0 60892 4 1 genus 475 2 Desulfobacca 0 60893 species 471 1 Desulfobacca acetoxidans 601 2 Syntrophus 43773 0 4 genus 1 0 316277 species 1 597 Syntrophus aciditrophicus Epsilonproteobacteria 35350 70 62 class 1 29547 0 491 order 1 213849 0 Campylobacterales 33398 64 family 0 2771472 3141 4 genus 0 269260 635 1 Nitratifractor salsuginis 1 635 species 0 269261 0 265570 6 1 genus 2506 3 Sulfurovum Sulfurovum lithotrophicum 548 1 species 0 206403 2646778 0 no rank 1952 1 Sulfurovum sp. NBC37-1 1952 1 species 0 387093 Helicobacteraceae 4749 14 family 1 9 72293 0 706 1 843 0 genus Wolinella succinogenes 1 706 species 844 0 4034 12 Helicobacter 0 209 1 genus 18 1 305 0 2593540 no rank Helicobacter sp. MIT 01-6242 1 305 species 0 222136 Helicobacter hepaticus 480 1 species 0 32025 1 175 Helicobacter bilis 0 37372 species 32 1 Helicobacter acinonychis 212 0 species Helicobacter typhlonius 167 1 species 76936 0 Helicobacter himalayensis 222 1 species 1591088 0 0 213 species 107 1 Helicobacter cinaedi 97 1 Helicobacter felis 0 214 species Helicobacter mustelae 1 229 species 217 0 species 210 0 Helicobacter pylori 1 1704 1 498 Helicobacter cetorum 0 138563 species 0 72294 1 family 986 24164 41 Campylobacteraceae 194 0 genus 1 85 17742 26 Campylobacter species 0 76517 Campylobacter hominis 265 1 Campylobacter pinnipediorum 528 1 species 1965231 0 Campylobacter curvus 669 1 species 0 200 species 0 497724 Campylobacter subantarcticus 508 1 824 0 species 1 229 Campylobacter gracilis Campylobacter ureolyticus 1 203 species 827 0 Campylobacter cuniculorum 244 1 species 374106 0 species 0 28898 Campylobacter helveticus 128 1 0 198 species 165 1 Campylobacter hyointestinalis 1 808 Campylobacter insulaenigrae 0 260714 species 1 101 Campylobacter avium 522485 0 species species 488546 0 Campylobacter peloridis 782 1 no rank 0 2593542 4 1069 Campylobacter sp. RM16704 139 1 species 1500960 0 Campylobacter sp. RM8964 1 121 species 1660074 0 species 0 1660076 Campylobacter sp. RM12175 1 158 0 1660073 species 651 1 Campylobacter sp. RM6137 1 3500 Campylobacter jejuni 0 197 species species 0 1031542 Campylobacter volucris 325 1 1 586 Campylobacter lari 201 0 species 1 494 Campylobacter fetus 0 196 species 0 75658 species 352 1 Campylobacter lanienae 5304 1 Campylobacter coli 0 195 species species 1244531 0 Campylobacter iguaniorum 1 577 0 206 species 185 1 Campylobacter sputorum species 0 199 Campylobacter concisus 635 1 9 4010 Sulfurospirillum 0 57665 1 genus 40 Sulfurospirillum deleyianum 1 634 species 0 65553 194424 0 species 278 1 Sulfurospirillum halorespirans 44674 0 species 741 1 Sulfurospirillum barnesii 1 897 Sulfurospirillum multivorans 0 66821 species 2618290 0 no rank 3 1244 Sulfurospirillum sp. JPD-1 802 1 species 0 220622 201 1 Sulfurospirillum sp. UCH001 1581011 0 species 0 1986224 species 241 1 Sulfurospirillum sp. SL2-1 1 176 Sulfurospirillum cavolei 0 366522 species 1426 5 no rank 0 2321108 21 1 genus 0 28196 Arcobacter 3 479 species 28199 0 Arcobacter nitrofigilis 154 1 28197 0 species 1 304 Arcobacter butzleri 0 2321207 no rank 434 1 species 0 944547 Arcobacter sp. L 1 434 2321187 0 genus 513 1 513 1 Arcobacter sp. LPB0137 0 1850254 species 853 4 0 2771471 family 0 286130 genus 189 1 Sulfuricurvum kujiense 189 1 species 0 148813 664 3 Sulfurimonas 202746 0 genus 1 7 39766 0 species 1 198 Sulfurimonas denitrificans Sulfurimonas autotrophica 459 1 species 0 202747 Nautiliales 1890 5 1 order 2 0 235899 711 2 2795691 0 family 711 2 Nitratiruptor 0 269258 1 genus 13 2624044 0 no rank 698 1 1 698 Nitratiruptor sp. SB155-2 0 387092 species 0 224467 family 1177 2 1177 2 Nautilia 191291 0 genus 1 4 1 1173 Nautilia profundicola 244787 0 species 547 342053 Alphaproteobacteria 28211 0 class 1 1473 Caulobacterales 20 16881 1 order 93 0 204458 76892 0 family 1 305 16788 19 Caulobacteraceae Brevundimonas 7 5691 231 1 genus 0 41275 2622653 0 no rank 2745 3 Brevundimonas sp. DS20 609 1 species 0 1532555 species 1827469 0 Brevundimonas sp. GW460-12-10-14-LB2 1 1087 species 0 1938605 Brevundimonas sp. LM2 1049 1 0 74313 species 724 1 Brevundimonas subvibrioides 41276 0 species 1 1088 Brevundimonas vesicularis species 588932 0 Brevundimonas naejangsanensis 903 1 4 genus 1 20 0 Phenylobacterium 2 789 785 1 Phenylobacterium zucineum 0 284016 species 6 8495 Caulobacter 0 75 1 genus 74 species 88688 0 Caulobacter segnis 1 1212 0 2648921 no rank 2050 1 Caulobacter sp. K31 1 2050 species 0 366602 69395 0 species 1198 1 Caulobacter henricii 69666 0 species 1 1068 Caulobacter mirabilis Caulobacter vibrioides 2893 1 species 0 155892 81440 0 no rank 1 734 1 734 Caulobacteraceae bacterium OTSz_A_272 1759059 0 species 0 76890 6 1 genus 774 2 Asticcacaulis species 0 78587 Asticcacaulis excentricus 1 768 3375 7 0 82117 no rank 2 825 Polymorphum 0 991903 1 genus 8 1 817 Polymorphum gilvum 991904 0 species 2 1816 Phreatobacter 0 1632780 1 genus 13 Phreatobacter sp. S-12 1803 1 species 0 1868589 297 1 clade 0 62654 297 1 genus 767891 0 species 0 767892 Candidatus Puniceispirillum marinum 297 1 genus 1 5 213485 0 Micavibrio 437 2 species 349221 0 Micavibrio aeruginosavorus 432 1 2 981 2800059 0 order 0 2800061 family 981 2 0 74317 1 genus 10 2 981 Maricaulis 1 971 Maricaulis maris 74318 0 species 0 54526 order 6 475 2045213 0 genus 1 118 species 1925548 0 Candidatus Fonsibacter ubiquis 118 1 5 357 Pelagibacteraceae 1655514 0 2 family 1 198251 0 genus 2 173 2647897 0 no rank 1 119 species 1002672 0 Candidatus Pelagibacter sp. IMCC9063 119 1 54 1 Candidatus Pelagibacter ubique 0 198252 species 0 1655516 no rank 182 2 species 859653 0 alpha proteobacterium HIMB5 78 1 0 744985 species 104 1 alpha proteobacterium HIMB59 Parvularculales 4 861 1 1 order 0 255473 Parvularculaceae 3 860 family 1 1 255474 0 208215 0 4 genus 1 859 2 Parvularcula species 208216 0 Parvularcula bermudensis 855 1 Sphingomonadales 82 53709 398 order 1 204457 0 0 335929 175 1 family 22 12394 Erythrobacteraceae 2 929 genus 0 2800686 Altererythrobacter mangrovi 1 392 species 1982042 0 0 692370 species 1 537 Altererythrobacter dongtanensis 2800685 0 genus 1 350 Altererythrobacter marensis 350 1 species 0 543877 Croceicoccus 3 1952 1 genus 23 0 1295327 Croceicoccus marinus 1 1558 species 450378 0 species 0 1348774 Croceicoccus naphthovorans 371 1 1314 4 Altererythrobacter 0 361177 41 1 genus 0 361183 species 297 1 Altererythrobacter epoxidivorans species 476157 0 Altererythrobacter ishigakiensis 1 540 Altererythrobacter atlanticus 436 1 species 0 1267766 2800788 0 no rank 3667 6 Erythrobacter 1982 3 88 genus 1 1041 0 1 1399 Erythrobacter litoralis 39960 0 species species 0 1112 Porphyrobacter neustonensis 1 495 Porphyrobacter 1685 3 25 genus 1 1111 0 2 1660 no rank 0 2683265 604 1 Porphyrobacter HT-58-2 2023229 0 species species 0 1896196 Porphyrobacter sp. LM 6 1056 1 1225 2 0 2800681 genus 1 311 Erythrobacter atlanticus 0 1648404 species 502682 0 species 1 914 Erythrobacter gangjinensis 1 662 2800682 0 genus Altererythrobacter namhicola 1 662 species 0 645517 2 2120 1855416 0 genus species 266951 0 Erythrobacter seohaensis 1 1530 species 192812 0 Erythrobacter flavus 1 590 Sphingomonadaceae 59 40917 463 1 family 0 41297 1 345 genus 2709685 0 species 0 266812 Sphingorhabdus flavimaris 1 345 72173 0 20 genus 1 717 2 Citromicrobium 0 2630544 no rank 697 1 species 1634516 0 Citromicrobium sp. JL477 697 1 860 2 Rhizorhabdus 0 1649486 13 1 genus 1 847 Rhizorhabdus dicambivorans 0 1850238 species 1260 1 2685927 0 genus 0 1921510 species 1260 1 Sphingomonas sp. JJ-A5 15 13032 Sphingomonas 13687 0 genus 1 211 Sphingomonas wittichii 1886 2 species 1 1145 160791 0 1 741 Sphingomonas sp. DC-6 1283312 0 strain 0 1560345 species 1 525 Sphingomonas panacis species 93064 0 Sphingomonas koreensis 875 1 196159 0 no rank 6 5383 species 0 1961362 Sphingomonas sp. NIC1 671 1 Sphingomonas sp. Cra20 1 1113 species 1327635 0 929 1 Sphingomonas sp. LM7 0 1938607 species Sphingomonas sp. KC8 1 408 species 1030157 0 species 745310 0 Sphingomonas sp. MM-1 1 945 Sphingomonas sp. LK11 1 1317 species 1390395 0 1 643 Sphingomonas melonis 0 152682 species 0 1549858 species 1315 1 Sphingomonas taxi 397260 0 species 1454 1 Sphingomonas sanxanigenens 0 1609977 species 740 1 Sphingomonas hengshuiensis genus 1 4 150203 0 Blastomonas 1199 2 no rank 2626550 0 1195 1 species 1842535 0 Blastomonas sp. RAC04 1 1195 0 165697 244 1 genus 10 6092 Sphingopyxis species 33050 0 Sphingopyxis macrogoltabida 1 1023 2685 4 2614943 0 no rank 1866325 0 species 623 1 Sphingopyxis sp. MG Sphingopyxis sp. LPB0140 1 141 species 0 1913578 0 292913 species 1477 1 Sphingopyxis sp. 113P3 444 1 Sphingopyxis sp. QXT-31 1357916 0 species 1 627 Sphingopyxis granuli 0 267128 species 1 468 Sphingopyxis alaskensis 0 117207 species Sphingopyxis terrae 1 481 species 0 33052 species 0 1515612 Sphingopyxis fribergensis 564 1 1110 3 Sphingorhabdus 0 1434046 1 genus 14 1096 2 2614947 0 no rank Sphingorhabdus sp. M41 1 791 species 0 1806885 0 2077182 species 1 305 Sphingorhabdus sp. YGSMI21 Zymomonas 2 1419 1 genus 75 0 541 Zymomonas mobilis 1 1344 species 542 0 165696 0 genus 1 53 5 2859 Novosphingobium 882 1 Novosphingobium resinovorum 158500 0 species 428 1 Novosphingobium aromaticivorans 0 48935 species Novosphingobium pentaromativorans 721 1 species 0 205844 775 1 no rank 0 2644732 Novosphingobium sp. PP1Y 1 775 species 0 702113 15 11561 Sphingobium 165695 0 319 genus 1 species 332055 0 Sphingobium indicum 659 1 1 695 Sphingobium yanoikuyae 0 13690 species species 0 76947 Sphingobium herbicidovorans 711 1 46429 0 species 1 1145 Sphingobium chlorophenolicum 1 829 Sphingobium baderi 0 1332080 species species 0 1673076 Sphingobium hydrophobicum 1 752 0 332056 species 1 821 Sphingobium japonicum 0 2611147 no rank 6 4840 0 484429 species 685 1 Sphingobium sp. YBL2 species 1315974 0 Sphingobium sp. TKS 1 498 1843368 0 species 1 906 Sphingobium sp. RAC03 Sphingobium sp. EP60837 1198 1 species 0 1855519 species 627192 0 Sphingobium sp. SYK-6 582 1 407020 0 species 1 971 Sphingobium sp. MI1205 0 120107 species 1 790 Sphingobium cloacae 0 204455 544 1 order 85 54836 Rhodobacterales 31989 0 family 1 761 54292 84 Rhodobacteraceae 1 664 1649279 0 genus 379347 0 species 1 664 Ruegeria mobilis 2 1441 Pelagibaca 0 360528 14 1 genus 0 1250539 species 1427 1 Pelagibaca abyssi Rhodobacter 5 5326 1 genus 127 0 1060 1 784 Rhodobacter capsulatus 1061 0 species 1249 2 no rank 196779 0 1850250 0 species 1 550 Rhodobacter sp. LPB0142 Rhodobacter sp. CZR27 1 699 species 0 2033869 1063 0 species 1 3166 Rhodobacter sphaeroides 1579315 0 genus 1 122 1579316 0 species 1 122 Halocynthiibacter arcticus 561 1 0 159345 genus 159346 0 species 561 1 Roseibacterium elongatum 4 3072 Labrenzia 0 478070 1 genus 33 1 1240 Labrenzia aggregata 0 187304 species no rank 0 2648686 2 1799 945 1 Labrenzia sp. CP4 1674922 0 species 2021862 0 species 854 1 Labrenzia sp. VG12 genus 1 15 227873 0 Pannonibacter 2 1332 1317 1 Pannonibacter phragmitetus 121719 0 species 2433 0 1 genus 1 3 1106 Roseobacter 42443 0 species 1 556 Roseobacter litoralis 549 1 Roseobacter denitrificans 2434 0 species 3493 4 Rhodovulum 34008 0 221 genus 1 2 1954 no rank 0 2631432 631 1 Rhodovulum sp. P5 1564506 0 species 1323 1 Rhodovulum sp. MB263 308754 0 species 35806 0 species 1 1318 Rhodovulum sulfidophilum Ruegeria 1862 3 1 genus 1 0 97050 436 1 no rank 0 2625375 species 0 292414 Ruegeria sp. TM1040 1 436 1425 1 Ruegeria pomeroyi 0 89184 species 1 264 0 1759396 genus no rank 0 2622455 1 264 1 264 Marivivens sp. JLT3646 0 1920883 species 0 436357 genus 1 2 Thalassococcus 758 2 Leisingera 0 191028 5 1 genus Leisingera methylohalidivorans 1 753 species 133924 0 309512 0 genus 1 758 Dinoroseobacter shibae 758 1 species 0 215813 Octadecabacter 4 1287 1 genus 5 0 53945 Octadecabacter temperatus 258 1 species 0 1458307 species 0 53946 Octadecabacter arcticus 1 380 644 1 Octadecabacter antarcticus 1217908 0 species 2 799 Sagittula 58842 0 genus 1 12 no rank 0 2624628 787 1 species 0 2009329 Sagittula sp. P11 1 787 11 1 genus 0 60136 Sulfitobacter 3 1807 no rank 0 196795 1 977 species 0 1917485 Sulfitobacter sp. AM1-D1 1 977 819 1 Sulfitobacter pseudonitzschiae 1402135 0 species 720 1 0 188905 genus 1 720 2645469 0 no rank 720 1 Jannaschia sp. CCS1 0 290400 species 1097466 0 1 genus 1 874 2 Defluviimonas 1335048 0 species 873 1 Defluviimonas alba 935 2 Roseovarius 74030 0 genus 1 2 species 215743 0 Roseovarius mucosus 933 1 genus 0 299261 1 408 Tateyamaria omphalii 408 1 species 299262 0 5 5734 Phaeobacter 302485 0 genus 1 33 Phaeobacter piscinae 1 1649 species 1580596 0 species 1844006 0 Phaeobacter porticola 449 1 Phaeobacter inhibens 1 2273 species 221822 0 60890 0 species 1 1330 Phaeobacter gallaeciensis 0 58840 no rank 2 821 0 1904441 species 292 1 Rhodobacteraceae bacterium 0 2033435 species 1 529 Rhodobacteraceae bacterium QY30 0 1284657 1 genus 2 347 2 Planktomarina 0 1284658 species 345 1 Planktomarina temperata Celeribacter 5 2658 24 1 genus 0 875170 Celeribacter marinus 434 1 species 0 1397108 Celeribacter ethanolicus 1 550 species 0 1758178 1208324 0 species 984 1 Celeribacter indicus 1 666 Celeribacter manganoxidans 1411902 0 species 942 2 Confluentimicrobium 0 1609958 3 1 genus 0 2643318 no rank 1 939 species 0 1609966 Confluentimicrobium sp. EMB200-NS6 939 1 265 0 117 genus 1 8713 9 Paracoccus Paracoccus yeei 1374 1 species 147645 0 1 1186 Paracoccus aminovorans 0 34004 species 34003 0 species 819 1 Paracoccus aminophilus species 2065379 0 Paracoccus sp. CBA4604 910 1 266 0 species 1 1931 Paracoccus denitrificans 1 508 0 246570 no rank 1 508 Paracoccus sp. BM15 0 1529068 species 1 820 Paracoccus contaminans 1945662 0 species species 0 1077935 Paracoccus zhejiangensis 1048 1 755 1 2211641 0 genus 245188 0 species 755 1 Loktanella vestfoldensis 722 1 genus 285107 0 species 0 1915078 Thioclava nitratireducens 1 722 367 1 0 74032 genus species 0 74033 Antarctobacter heliothermus 367 1 Ketogulonicigenium 3 1059 11 1 genus 0 92944 species 0 92947 Ketogulonicigenium robustum 1 393 species 0 92945 Ketogulonicigenium vulgare 655 1 Loktanella 1 2 genus 0 245186 2 2382 0 263377 genus 1 1170 no rank 0 2640570 Yangia sp. CCB-MM3 1170 1 species 0 1792508 1229727 0 species 1212 1 Thiobacimonas profunda 2 934 Marinovum 367771 0 genus 1 2 species 0 42444 Marinovum algicola 932 1 504 1 119541 0 genus Rhodobaca barguzinensis 504 1 species 0 441209 412 1 order 0 204441 Rhodospirillales 64 46240 41295 0 355 family 1 30 26484 Rhodospirillaceae Niveispirillum 1655 2 46 genus 1 1543704 0 species 1612173 0 Niveispirillum cyanobacteriorum 1 1609 11 genus 1 1543705 0 Nitrospirillum 2237 2 Nitrospirillum amazonense 2226 1 species 28077 0 Rhodospirillum 3 2076 29 1 genus 0 1081 1085 0 species 928 1 Rhodospirillum rubrum Rhodospirillum centenum 1 1119 species 0 34018 50 1 genus 0 171436 Tistrella 2 1461 species 171437 0 Tistrella mobilis 1 1411 1 124 0 1263978 genus 1263979 0 species 124 1 Candidatus Endolissoclinum faulkneri 168934 0 genus 1 19 3 1205 Thalassospira 0 2048283 species 673 1 Thalassospira sp. CSC3H3 1 513 Thalassospira xiamenensis 0 220697 species 191 0 genus 1 241 10141 5 Azospirillum 0 193 species 1 3644 Azospirillum lipoferum 1867 1 Azospirillum thiophilum 528244 0 species Azospirillum brasilense 3056 1 species 0 192 Azospirillum humicireducens 1 1333 species 1226968 0 genus 1 9 1804663 0 Haematospirillum 2 238 229 1 Haematospirillum jordaniae 0 1549855 species 1 genus 4 0 1182780 Magnetospira 894 2 0 2685734 no rank 890 1 Magnetospira sp. QH-2 890 1 species 1288970 0 13134 0 82 genus 1 5 5365 Magnetospirillum 1410 1 Magnetospirillum magneticum 84159 0 species Magnetospirillum gryphiswaldense 1285 1 species 0 55518 no rank 0 2617991 2588 2 species 1639348 0 Magnetospirillum sp. ME-1 1342 1 1246 1 Magnetospirillum sp. XM-1 1663591 0 species Pararhodospirillum 733 2 1 genus 12 0 1612157 Pararhodospirillum photometricum 1 721 species 1084 0 33 19344 Acetobacteraceae 0 433 1 family 583 0 1434011 66 1 genus 2446 5 Komagataeibacter species 1177712 0 Komagataeibacter medellinensis 399 1 Komagataeibacter xylinus 1 993 species 0 28448 species 265960 0 Komagataeibacter nataicola 581 1 Komagataeibacter europaeus 407 1 species 0 33995 Granulibacter 2 1627 21 genus 1 364409 0 species 0 364410 Granulibacter bethesdensis 1606 1 408 2 Neoasaia 320496 0 genus 1 7 Neoasaia chiangmaiensis 1 401 species 0 320497 1 408 91914 0 genus 1 408 Asaia bogorensis 0 91915 species Gluconacetobacter 601 2 11 genus 1 89583 0 Gluconacetobacter diazotrophicus 1 590 species 0 33996 0 1602345 genus 1 1107 0 1510841 species 1 1107 Parasaccharibacter apium Acetobacter 4877 8 genus 1 100 434 0 65959 0 species 1 275 Acetobacter pomorum 628 1 subgenus 151157 0 Acetobacter aceti 628 1 species 0 435 104102 0 species 462 1 Acetobacter tropicalis 1839 1 Acetobacter pasteurianus 0 438 species 446692 0 species 1 580 Acetobacter senegalensis Acetobacter oryzifermentans 386 1 species 1633874 0 Acetobacter persici 607 1 species 0 1076596 3 2590 Roseomonas 125216 0 genus 1 98 1196 1 no rank 0 2617492 species 0 2018065 Roseomonas sp. FDAARGOS_362 1196 1 Roseomonas gilardii 1 1296 species 0 257708 2 560 Kozakia 153497 0 52 genus 1 1 508 Kozakia baliensis 153496 0 species 53 1 genus 0 441 Gluconobacter 3 2760 1 2000 Gluconobacter oxydans 0 442 species 318683 0 species 707 1 Gluconobacter albidus 3 1377 Acidiphilium 0 522 45 1 genus Acidiphilium cryptum 1 646 species 0 524 686 1 Acidiphilium multivorum 62140 0 species Holosporales 5 1456 57 1 order 0 1921002 640 2 0 2100208 family 1 genus 1 0 1509243 Candidatus Nucleicultrix 640 2 1509244 0 species 639 1 Candidatus Nucleicultrix amoebiphila 257 1 0 1777752 family 257 1 1521255 0 genus Candidatus Paracaedibacter acanthamoebae 1 257 species 91604 0 502 1 0 44746 family no rank 204454 0 1 502 86106 0 species 1 502 endosymbiont of Acanthamoeba sp. UWC8 1 order 8 0 1191478 Magnetococcales 291 3 283 2 family 0 1191479 genus 1 1 162171 0 Magnetococcus 283 2 1124597 0 species 282 1 Magnetococcus marinus order 0 2800060 5 2283 Hyphomonadaceae 5 2283 26 1 family 0 69657 1 genus 2 0 85 Hyphomonas 3 1542 no rank 2630699 0 1 777 777 1 Hyphomonas sp. Mor2 0 1906738 species 81032 0 species 763 1 Hyphomonas neptunium 2723 0 genus 715 1 715 1 Hirschia baltica 2724 0 species Rickettsiales 7663 53 60 1 order 0 766 no rank 0 1699067 1 379 species 1528098 0 Rickettsiales bacterium Ac37b 1 379 3543 22 Anaplasmataceae 942 0 family 1 4 Ehrlichia 6 703 6 genus 1 943 0 106181 0 no rank 285 1 Ehrlichia sp. HF 1 285 species 391036 0 412 4 0 106178 species group species 0 779 Ehrlichia ruminantium 1 95 0 35795 species 171 1 Ehrlichia muris species 0 944 Ehrlichia canis 62 1 0 945 species 84 1 Ehrlichia chaffeensis 303 3 genus 768 0 123 1 Anaplasma marginale 0 770 species 106179 0 species group 130 1 0 948 species 1 130 Anaplasma phagocytophilum 0 769 species 1 50 Anaplasma centrale tribe 0 952 1670 8 953 0 4 genus 1 8 1670 Wolbachia no rank 0 2640676 1666 7 Wolbachia sp. wRi 169 1 species 0 66084 Wolbachia endosymbiont of Drosophila simulans 224 1 species 77038 0 Wolbachia endosymbiont of Drosophila melanogaster 1 128 species 163164 0 Wolbachia endosymbiont of Onchocerca ochengi 502 1 species 100901 0 35 1 Wolbachia endosymbiont of Brugia malayi 0 80849 species species 246273 0 Wolbachia endosymbiont of Cimex lectularius 107 1 Wolbachia endosymbiont of Onchocerca volvulus 501 1 species 0 77551 863 4 Neorickettsia 33993 0 5 genus 1 Neorickettsia sennetsu 657 1 species 0 951 33994 0 species 38 1 Neorickettsia helminthoeca 0 950 species 163 1 Neorickettsia risticii 1 family 1 775 0 Rickettsiaceae 3644 27 genus 1 1 2115980 0 Candidatus Phycorickettsia 2 68 67 1 Candidatus Phycorickettsia trachydisci 0 2115978 species 3575 24 33988 0 tribe 2344 23 Rickettsia 780 0 152 genus 1 1 172 114295 0 no rank species 337479 0 Rickettsia endosymbiont of Bemisia tabaci 1 172 0 114292 species group 2 102 1 65 Rickettsia prowazekii 782 0 species 37 1 Rickettsia typhi 785 0 species 17 1658 species group 114277 0 Rickettsia amblyommatis 15 1 species 0 33989 36 1 Rickettsia rhipicephali 33992 0 species Rickettsia akari 1 275 species 0 786 species 0 35794 Rickettsia slovaca 55 1 35790 0 species 1 19 Rickettsia japonica 39 1 Rickettsia monacensis 0 109232 species species 0 226665 Rickettsia heilongjiangensis 1 15 35791 0 species 1 19 Rickettsia massiliae species 47589 0 Rickettsia peacockii 1 137 1 11 Rickettsia conorii 781 0 species Rickettsia australis 1 715 species 0 787 1 132 Rickettsia felis 0 42862 species Rickettsia africae 79 1 species 35788 0 Rickettsia rickettsii 22 1 species 0 783 Rickettsia parkeri 15 1 species 35792 0 Rickettsia philipii 58 1 species 1105106 0 16 1 Rickettsia montanensis 0 33991 species 2 260 0 1129742 species group 1 206 Rickettsia bellii 0 33990 species 54 1 Rickettsia canadensis 0 788 species 1231 1 0 69474 genus 1231 1 Orientia tsutsugamushi 784 0 species 2 1 family 0 1328881 Candidatus Midichloriaceae 37 2 genus 411566 0 35 1 Candidatus Midichloria mitochondrii 35 1 species 0 234827 Rhizobiales 210 151529 1424 1 order 0 356 0 45404 1 family 1 1267 5 Beijerinckiaceae 9 1 genus 0 532 Beijerinckia 658 2 533 0 species 1 649 Beijerinckia indica 2 608 Methylocella 120652 0 genus 1 19 Methylocella silvestris 589 1 species 199596 0 Xanthobacteraceae 7 4146 1 family 27 0 335928 1408 2 Starkeya 152053 0 genus 1 218 Starkeya novella 1 1190 species 921 0 2 1685 Azorhizobium 6 0 16 genus 1 species 0 7 Azorhizobium caulinodans 1 1669 14 genus 1 279 0 Xanthobacter 2 1026 Xanthobacter autotrophicus 1012 1 species 0 280 Hyphomicrobiaceae 19 9314 family 1 77 45401 0 1068 0 genus 1 5 2 348 Rhodomicrobium 0 1069 species 1 343 Rhodomicrobium vannielii Pelagibacterium 481 2 1 genus 2 0 1082930 479 1 Pelagibacterium halotolerans 0 531813 species 737 2 Blastochloris 59282 0 17 genus 1 1079 0 species 1 720 Blastochloris viridis 0 119044 3 1 genus 2 578 Filomicrobium Candidatus Filomicrobium marinum 575 1 species 1608628 0 2792 4 Hyphomicrobium 0 81 14 1 genus species 0 1427356 Hyphomicrobium nitrativorans 1102 1 no rank 0 2619925 1 733 0 717785 species 733 1 Hyphomicrobium sp. MC1 Hyphomicrobium denitrificans 943 1 species 53399 0 4 3131 Devosia 46913 0 genus 1 33 no rank 196773 0 3098 3 Devosia sp. H5989 1 1281 species 1643450 0 Devosia sp. A16 1 1023 species 0 1736675 2083786 0 species 1 794 Devosia sp. I507 2 1170 Rhodoplanes 29407 0 88 genus 1 no rank 0 2619116 1082 1 0 674703 species 1 1082 Rhodoplanes sp. Z2-YC6860 26 30346 Bradyrhizobiaceae 0 41294 566 1 family 10 1 genus 0 40136 Oligotropha 671 2 Oligotropha carboxidovorans 661 1 species 40137 0 Nitrobacter 3 839 1 genus 12 0 911 476 1 Nitrobacter winogradskyi 0 913 species 912 0 species 351 1 Nitrobacter hamburgensis Bradyrhizobium 11 15976 625 1 genus 0 374 0 1355477 species 1 3152 Bradyrhizobium diazoefficiens 1917 1 Bradyrhizobium oligotrophicum 0 44255 species 6 7276 no rank 2631580 0 species 0 114615 Bradyrhizobium sp. ORS 278 1671 1 0 376 species 1 1248 Bradyrhizobium sp. 1435 1 Bradyrhizobium sp. BTAi1 0 288000 species Bradyrhizobium sp. CCGE-LA001 952 1 species 0 1223566 887 1 Bradyrhizobium sp. ORS 285 115808 0 species 0 2057741 species 1083 1 Bradyrhizobium sp. SK17 species 0 1274631 Bradyrhizobium icense 1 1071 Bradyrhizobium japonicum 1 1935 species 375 0 19 genus 1 1649510 0 Variibacter 754 2 Variibacter gotjawalensis 1 735 species 1333996 0 85413 0 109 genus 1 5483 5 Bosea 1945 1 Bosea vaviloviae 1526658 0 species no rank 2653178 0 3429 3 species 1792307 0 Bosea sp. PAMC 26642 1083 1 1 1114 Bosea sp. AS-1 2015316 0 species species 1842539 0 Bosea sp. RAC05 1 1232 2 6057 Rhodopseudomonas 1073 0 163 genus 1 Rhodopseudomonas palustris 5894 1 species 0 1076 6 2260 no rank 119042 0 Methyloceanibacter 771 2 7 genus 1 1484898 0 Methyloceanibacter caenitepidi 1 764 species 0 1384459 Hartmannibacter 2 854 1 genus 3 0 1572860 species 1482074 0 Hartmannibacter diazotrophicus 1 851 1734920 0 genus 1 3 2 635 Pseudorhodoplanes 632 1 Pseudorhodoplanes sinuspersici 0 1235591 species 772 0 family 1 1 5031 18 Bartonellaceae 17 5030 Bartonella 773 0 genus 1 15 0 803 species 63 1 Bartonella quintana 113 1 Bartonella grahamii 33045 0 species Bartonella vinsonii 105 1 species 0 33047 1 221 Bartonella ancashensis 0 1318743 species Bartonella henselae 1 444 species 0 38323 0 388640 species 1 128 Bartonella australis Bartonella clarridgeiae 181 1 species 56426 0 species 1686310 0 Bartonella apis 1208 1 900 1 Bartonella tribocorum 0 85701 species species 774 0 Bartonella bacilliformis 566 1 0 2645622 no rank 1086 6 Bartonella sp. JB63 1 159 species 1933907 0 0 1933906 species 1 159 Bartonella sp. JB15 species 0 1933910 Bartonella sp. A1379B 1 51 Bartonella sp. WD16.2 513 1 species 0 1933904 1 43 Bartonella sp. Raccoon60 1933912 0 species 161 1 Bartonella sp. 1-1C 515256 0 species Rhodobiaceae 3 516 1 family 5 0 119043 2 511 Parvibaculum 0 256616 1 genus 31 Parvibaculum lavamentivorans 1 480 species 256618 0 family 1 53 119045 0 Methylobacteriaceae 17258 15 9 11212 Methylobacterium 0 407 1 genus 469 2615210 0 no rank 3520 3 0 1479019 species 1 1429 Methylobacterium sp. C1 925818 0 species 1068 1 Methylobacterium sp. AMS5 species 426117 0 Methylobacterium sp. 4-46 1 1023 0 31998 species 1865 1 Methylobacterium radiotolerans 1 1358 Methylobacterium phyllosphaerae 418223 0 species species 334852 0 Methylobacterium oryzae 1 1522 Methylobacterium nodulans 1 1191 species 114616 0 1287 1 Methylobacterium aquaticum 0 270351 species 0 186650 28 1 genus 2 1384 Microvirga 0 1882682 species 1 1356 Microvirga ossetica genus 0 2282523 4609 3 1 1315 Methylobacterium populi 0 223967 species 1 2603 Methylobacterium extorquens 408 0 species 691 1 Methylobacterium zatmanii 29429 0 species Phyllobacteriaceae 20 16029 family 1 135 69277 0 Hoeflea 2 792 5 genus 1 274591 0 787 1 2614931 0 no rank species 0 1620421 Hoeflea sp. IMCC20628 1 787 68287 0 188 genus 1 9113 9 Mesorhizobium 1184 1 Mesorhizobium opportunistum 593909 0 species 536018 0 species 1194 1 Mesorhizobium australicum species 0 2066070 Mesorhizobium japonicum 928 1 0 71433 species 1 942 Mesorhizobium amorphae species 1670800 0 Mesorhizobium sp. B7 987 1 no rank 0 325217 1189 1 1189 1 Mesorhizobium sp. WSM1497 278153 0 species 933 1 Mesorhizobium loti 381 0 species 39645 0 species 1 1568 Mesorhizobium ciceri Nitratireductor 1878 2 1 genus 20 0 245876 Nitratireductor basaltis 1858 1 species 0 472175 2 1629 Aminobacter 0 31988 11 1 genus species 83263 0 Aminobacter aminovorans 1 1618 1148 2 Phyllobacterium 0 28100 10 1 genus Phyllobacterium zundukense 1138 1 species 0 1867719 5 1 genus 0 449972 Chelativorans 1334 2 no rank 0 2643807 1 1329 266779 0 species 1329 1 Chelativorans sp. BNC1 Methylocystaceae 2386 6 1 family 28 0 31993 1620 3 Methylocystis 0 133 1 genus 36 1 1002 no rank 0 2625913 187303 0 species 1002 1 Methylocystis sp. SC2 0 655015 species 1 582 Methylocystis bryophila 0 425 9 1 genus 738 2 Methylosinus 426 0 species 1 729 Methylosinus trichosporium 1853 4 Chelatococcaceae 0 2036754 1 family 7 28209 0 23 genus 1 1846 3 Chelatococcus 1067 1 no rank 2638111 0 Chelatococcus sp. CO-6 1 1067 species 0 1702325 species 0 444444 Chelatococcus daeguensis 1 756 Brucellaceae 6511 20 18 family 1 118882 0 3255 5 Ochrobactrum 528 0 genus 1 45 species 0 271865 Ochrobactrum sp. A44 1 668 species 419475 0 Ochrobactrum pseudogrignonense 1 689 Ochrobactrum anthropi 1 562 species 0 529 571256 0 species 1 1291 Ochrobactrum pituitosum 14 3238 Brucella 234 0 1106 genus 1 29459 0 species 1 77 Brucella melitensis species 0 120577 Brucella ceti 1 278 1 54 Brucella abortus 235 0 species Brucella ovis 1 15 species 0 236 Brucella pinnipedialis 193 1 species 120576 0 Brucella canis 1 194 species 36855 0 4 715 no rank 2632610 0 1891098 0 species 16 1 Brucella sp. 2002734562 Brucella sp. 141012304 273 1 species 1885919 0 0 1844051 species 1 246 Brucella sp. 09RB8910 Brucella sp. 09RB8471 1 180 species 1149952 0 444163 0 species 1 25 Brucella microti species 0 29461 Brucella suis 31 1 Brucella vulpis 1 550 species 0 981386 255475 0 family 1 11 7 3998 Aurantimonadaceae Martelella 4 3240 1 genus 67 0 293088 1 1216 2629616 0 no rank species 0 686597 Martelella sp. AD-3 1216 1 1017 1 Martelella mediterranea 293089 0 species 940 1 Martelella endophytica 0 1486262 species 0 414371 3 1 genus 2 747 Aureimonas 744 1 2615206 0 no rank Aureimonas sp. AU20 1 744 species 1349819 0 82115 0 family 1 413 53 49190 Rhizobiaceae 0 227290 no rank 37770 34 Rhizobium 26059 25 1369 genus 1 379 0 398 0 species 1 769 Rhizobium tropici 0 396 species 1690 1 Rhizobium phaseoli species 0 56730 Rhizobium gallicum 2440 1 0 29449 species 2968 1 Rhizobium etli 11115 19 2613769 0 no rank 0 1301032 species 439 1 Rhizobium sp. IE4771 1703966 0 species 146 1 Rhizobium sp. N731 species 0 1125847 Rhizobium sp. NT-26 1 671 1703960 0 species 1 7 Rhizobium sp. N113 species 1703962 0 Rhizobium sp. N1341 1 4 species 0 2020311 Rhizobium sp. Kim5 394 1 Rhizobium sp. Y9 1 1128 species 0 1914541 Rhizobium sp. S41 987 1 species 0 1869170 species 424182 0 Rhizobium sp. IRBG74 1111 1 136 1 Rhizobium sp. TAL182 0 2020313 species Rhizobium sp. ACO-34A 1447 1 species 1571470 0 Rhizobium sp. N741 1 1 species 0 1703967 0 1703961 species 146 1 Rhizobium sp. N1314 Rhizobium sp. 10195 1360 1 species 2028343 0 species 0 1703968 Rhizobium sp. N871 1 1 Rhizobium sp. NXC24 1291 1 species 0 2048897 Rhizobium sp. CIAT894 683 1 species 0 2020312 1981173 0 species 593 1 Rhizobium sp. NXC14 species 1703969 0 Rhizobium sp. N324 1 570 1 5708 Rhizobium leguminosarum 0 384 species 10156 7 Agrobacterium 0 357 1 genus 198 species group 1183400 0 4859 2 species 0 358 Agrobacterium tumefaciens 3864 1 Agrobacterium fabrum 1 995 species 0 1176649 1 1099 Agrobacterium rhizogenes 0 359 species 0 2632611 no rank 2 2391 1842536 0 species 1027 1 Agrobacterium sp. RAC06 861208 0 species 1364 1 Agrobacterium sp. H13-3 species 373 0 Agrobacterium vitis 1609 1 Neorhizobium 2 1555 genus 1 5 1525371 0 Neorhizobium galegae 1 1550 species 0 399 Shinella 2 1317 12 genus 1 323620 0 0 2643062 no rank 1305 1 0 879274 species 1305 1 Shinella sp. HZN7 545 6 Liberibacter 34019 0 4 genus 1 0 34021 species 1 34 Candidatus Liberibacter asiaticus 87 1 Liberibacter crescens 0 1273132 species Candidatus Liberibacter solanacearum 295 1 species 556287 0 Candidatus Liberibacter africanus 86 1 species 34020 0 309868 0 species 39 1 Candidatus Liberibacter americanus 0 227292 no rank 9145 10 1 genus 89 0 28105 Sinorhizobium 7 6973 species 0 194963 Sinorhizobium americanum 1444 1 1759 2 2613772 0 no rank Sinorhizobium sp. RAC02 1171 1 species 1842534 0 794846 0 species 1 588 Sinorhizobium sp. CCBAU 05631 species 110321 0 Sinorhizobium medicae 1 513 1586 1 0 663276 species group 0 380 species 1586 1 Sinorhizobium fredii 1582 1 Sinorhizobium meliloti 0 382 species 3 2172 Ensifer 106591 0 39 genus 1 716925 0 species 1 846 Ensifer sojae 0 106592 species 1 1287 Ensifer adhaerens Oligoflexia 9 2105 13 class 1 1553900 0 3 464 Bacteriovoracales 2024979 0 7 order 1 1 178 1652132 0 family genus 1652133 0 1 178 178 1 Halobacteriovorax marinus 0 97084 species 1 279 family 0 263369 1 279 genus 146784 0 279 1 Bacteriovorax stolpii 960 0 species 8 1 order 0 213481 Bdellovibrionales 5 1628 1620 4 Bdellovibrionaceae 0 213483 9 1 family 1 genus 5 0 958 Bdellovibrio 1611 3 species 959 0 Bdellovibrio bacteriovorus 1408 1 1 198 Bdellovibrio exovorus 453816 0 species 200930 0 phylum 2899 7 1 1 class 0 68337 Deferribacteres 7 2899 Deferribacterales 6 2898 1 1 order 0 191393 191394 0 family 1 27 2897 5 Deferribacteraceae 545865 0 genus 1 1376 species 477976 0 Calditerrivibrio nitroreducens 1376 1 genus 0 2351 329 1 species 0 2352 Flexistipes sinusarabici 329 1 genus 53572 0 331 1 0 197162 species 331 1 Deferribacter desulfuricans 834 1 genus 117999 0 834 1 Denitrovibrio acetiphilus 0 118000 species phylum 0 200940 679 7 class 1 1 67799 0 Thermodesulfobacteria 679 7 678 6 order 0 188710 Thermodesulfobacteriaceae 678 6 1 family 2 0 188711 genus 241192 0 1 233 171695 0 species 1 233 Thermodesulfatator indicus 0 1740 1 genus 9 194 3 Thermodesulfobacterium species 1295609 0 Thermodesulfobacterium geofontis 1 131 0 1741 species 1 54 Thermodesulfobacterium commune genus 0 444090 249 1 Caldimicrobium thiodismutans 249 1 species 1653476 0 0 200918 phylum 40 10963 4 1 class 0 188708 Thermotogae 40 10963 6 1229 Kosmotogales 1643946 0 1 order 1 1 family 4 0 1643948 Kosmotogaceae 1228 5 3 975 Kosmotoga 651456 0 genus 1 1 species 651457 0 Kosmotoga olearia 435 1 539 1 Kosmotoga pacifica 0 1330330 species 249 1 1184396 0 genus 1 249 Mesotoga prima 1184387 0 species Thermotogales 7744 28 25 order 1 2419 0 5 1 family 0 188709 Thermotogaceae 17 5537 1643951 0 27 genus 1 5 775 Pseudothermotoga Pseudothermotoga elfii 1 156 species 38322 0 177758 0 species 167 1 Pseudothermotoga lettingae species 57487 0 Pseudothermotoga hypogea 208 1 Pseudothermotoga thermarum 1 217 species 0 119394 Thermotoga 4757 11 genus 1 32 2335 0 0 1508420 species 195 1 Thermotoga profunda Thermotoga neapolitana 1 712 species 2337 0 Thermotoga naphthophila 625 1 species 0 93930 species 1508419 0 Thermotoga caldifontis 1 439 1 264 Thermotoga maritima 2336 0 species 0 2631113 no rank 4 1799 712 1 Thermotoga sp. RQ7 0 126738 species 380 1 Thermotoga sp. 2812B 1157948 0 species 1 353 Thermotoga sp. Cell2 0 1157947 species 0 126740 species 1 354 Thermotoga sp. RQ2 1 691 Thermotoga petrophila 93929 0 species Fervidobacteriaceae 10 2182 family 1 17 1643950 0 genus 1 6 2422 0 Fervidobacterium 1242 4 0 2424 species 262 1 Fervidobacterium nodosum species 0 93466 Fervidobacterium pennivorans 1 678 Fervidobacterium islandicum 296 1 species 0 2423 Thermosipho 5 923 genus 1 1 2420 0 no rank 2676525 0 286 2 142 1 Thermosipho sp. 1063 1462747 0 species 1 144 Thermosipho sp. 1070 1437364 0 species 2421 0 species 1 415 Thermosipho africanus Thermosipho melanesiensis 1 221 species 0 46541 0 1643947 1 order 1 1986 5 Petrotogales 1985 4 family 0 1643949 genus 0 1511648 1 762 0 1006576 species 1 762 Defluviitoga tunisiensis 0 28236 genus 1 487 487 1 Petrotoga mobilis 0 69499 species 736 2 160798 0 genus no rank 0 2640159 391 1 1545835 0 species 1 391 Marinitoga sp. 1137 species 0 149715 Marinitoga piezophila 345 1 46054 257 2157 0 superkingdom 0 28890 1 phylum 8 42141 214 Euryarchaeota class 1 4 183968 0 Thermococci 4436 40 8 1 order 0 2258 Thermococcales 39 4432 38 4424 Thermococcaceae 2259 0 family 1 7 64 1 genus 0 83867 1 64 Palaeococcus pacificus 0 971279 species 0 2263 1 genus 37 3070 29 Thermococcus species 0 53952 Thermococcus peptonophilus 67 1 species 0 342948 Thermococcus onnurineus 1 79 Thermococcus paralvinellae 1 84 species 0 582419 species 0 1712654 Thermococcus piezophilus 170 1 Thermococcus sibiricus 102 1 species 172049 0 species 0 2265 Thermococcus litoralis 1 75 species 0 54262 Thermococcus chitonophagus 109 1 187880 0 species 140 1 Thermococcus radiotolerans 2627626 0 no rank 6 734 species 0 2008440 Thermococcus sp. 5-4 83 1 0 1674923 species 65 1 Thermococcus sp. 2319x1 species 122420 0 Thermococcus sp. P6 1 88 0 1042877 species 1 211 Thermococcus sp. 4557 Thermococcus sp. EXT12c 64 1 species 2016361 0 Thermococcus sp. AM4 223 1 species 246969 0 277988 0 species 1 136 Thermococcus thioreducens Thermococcus siculi 1 69 species 72803 0 1 152 Thermococcus celer 2264 0 species 55802 0 species 88 1 Thermococcus barophilus 1 139 Thermococcus kodakarensis 311400 0 species 110164 0 species 64 1 Thermococcus guaymasensis Thermococcus eurythermalis 1 71 species 0 1505907 Thermococcus pacificus 258 1 species 71998 0 species 49899 0 Thermococcus profundus 1 109 species 0 195522 Thermococcus nautili 1 117 0 163003 species 1 92 Thermococcus cleftensis 1 46 Thermococcus gammatolerans 187878 0 species 68 1 Thermococcus gorgonarius 71997 0 species 64 1 Thermococcus barossii 54077 0 species 2260 0 genus 1283 7 2629106 0 no rank 2 482 0 1183377 species 22 1 Pyrococcus sp. ST04 species 342949 0 Pyrococcus sp. NA2 1 460 species 0 2261 Pyrococcus furiosus 1 502 1 83 Pyrococcus abyssi 29292 0 species 12 1 Pyrococcus horikoshii 0 53953 species 0 1008460 species 1 179 Pyrococcus yayanosii 0 1609559 species 1 25 Pyrococcus kukulkanii 2283796 0 clade 19 3799 3664 16 Thermoplasmata 183967 0 9 class 1 1 1 order 0 2301 Thermoplasmatales 1758 10 family 0 46630 1 75 1 75 genus 46631 0 species 0 82076 Picrophilus torridus 1 75 family 46659 0 2 57 genus 2302 0 2 57 35 1 Thermoplasma acidophilum 2303 0 species Thermoplasma volcanium 1 22 species 0 50339 2 85 0 1747776 family Cuniculiplasma 85 2 genus 1 1 1747777 0 1 84 Cuniculiplasma divulgatum 1673428 0 species 0 90142 family 3 345 74968 0 1 genus 1 3 345 Ferroplasma species 0 74969 Ferroplasma acidiphilum 1 172 species 97393 0 Ferroplasma acidarmanus 172 1 1195 1 1919231 0 no rank 1054217 0 species 1195 1 Thermoplasmatales archaeon BRNA1 Methanomassiliicoccales 643 4 order 1 3 1235850 0 1 202 family 2517203 0 1291539 0 genus 202 1 1291540 0 species 202 1 Candidatus Methanomethylophilus alvus 2 438 family 1577788 0 genus 0 1080709 146 1 1 146 Candidatus Methanomassiliicoccus intestinalis 0 1406512 species 0 1607807 genus 292 1 Candidatus Methanoplasma termitum 1 292 species 1577791 0 no rank 0 1234666 1254 1 0 1495144 species 1 1254 methanogenic archaeon ISO4-H5 0 1803510 clade 3 135 379546 0 1 genus 1 135 3 Aciduliprofundum Aciduliprofundum boonei 1 47 species 0 379547 no rank 0 2633939 87 1 1 87 Aciduliprofundum sp. MAR08-339 673860 0 species 1 class 46 0 183980 Archaeoglobi 10 1700 9 1654 order 0 2231 2232 0 family 1654 9 genus 0 190818 2 274 113653 0 species 54 1 Geoglobus ahangari 1 220 Geoglobus acetivorans 565033 0 species 0 2233 1 genus 4 1192 5 Archaeoglobus Archaeoglobus fulgidus 1 368 species 0 2234 0 84156 species 40 1 Archaeoglobus profundus 0 1316941 species 1 712 Archaeoglobus sulfaticallidus species 58290 0 Archaeoglobus veneficus 68 1 0 54260 4 1 genus 188 2 Ferroglobus Ferroglobus placidus 1 184 species 54261 0 108 26318 clade 2290931 0 Halobacteria 12966 59 1 class 39 0 183963 3805 15 Natrialbales 1644060 0 64 order 1 Natrialbaceae 3741 14 family 1 36 1644061 0 genus 353799 0 265 1 1 265 Halostagnicola larsenii 353800 0 species 63742 0 genus 1 453 453 1 Natrialba magadii 0 13769 species 1269201 0 genus 1 351 no rank 2621923 0 351 1 1333523 0 species 351 1 Salinarchaeum sp. Harcht-Bsk1 259 1 0 29287 genus species 0 29288 Natronococcus occultus 1 259 408 1 genus 0 387342 408 1 Halopiger xanaduensis 387343 0 species 88723 0 genus 2 744 no rank 2622230 0 399 1 1 399 Natrinema sp. J7-2 0 406552 species Natrinema pellirubrum 345 1 species 69525 0 1 genus 1 2256 0 Natronobacterium 2 295 species 44930 0 Natronobacterium gregoryi 294 1 121871 0 19 genus 1 3 578 Haloterrigena species 0 62320 Haloterrigena turkmenica 379 1 Haloterrigena daqingensis 1 180 species 0 588898 1 352 203193 0 genus 229731 0 species 352 1 Halobiforma lacisalsi 3970 17 Haloferacales 1644055 0 order 1 49 1 1 family 0 1963271 Halorubraceae 8 1094 Salinigranum 407 2 5 1 genus 0 1644057 Salinigranum rubrum 402 1 species 755307 0 Halorubrum 493 3 1 1 genus 0 56688 1 267 Halorubrum lacusprofundi 2247 0 species 1 225 Halorubrum trapanicum 0 29284 species 193 2 Halopenitus 0 1209988 1 genus 26 167 1 Halopenitus persicus 1048396 0 species 0 1644056 1 family 2 2559 7 Haloferacaceae 0 60846 genus 549 1 1 549 Halogeometricum borinquense 0 60847 species 1643 4 Haloferax 0 2251 1 genus 5 0 2252 species 581 1 Haloferax mediterranei Haloferax volcanii 639 1 species 2246 0 0 35746 species 1 418 Haloferax gibbonsii 1 365 293431 0 genus 1 365 Haloquadratum walsbyi 293091 0 species 268 1 no rank 2678336 0 1 268 halophilic archaeon DL31 756883 0 species 2235 0 35 order 1 26 5152 Halobacteriales Halobacteriaceae 10 1411 8 family 1 2236 0 69 2 Halanaeroarchaeum 0 1656823 1 genus 5 species 0 1604004 Halanaeroarchaeum sulfurireducens 1 64 0 2239 2 1 genus 4 906 Halobacterium 1 158 Halobacterium salinarum 0 2242 species Halobacterium hubeiense 1 228 species 1407499 0 1 518 no rank 0 2668073 Halobacterium sp. DL1 1 518 species 751944 0 3 genus 1 332246 0 Halalkalicoccus 219 2 species 413810 0 Halalkalicoccus jeotgali 216 1 1 209 genus 0 1980514 0 1873524 species 209 1 Halodesulfurarchaeum formicicum 3706 15 Haloarculaceae 0 1963268 195 1 family genus 0 63743 2 317 species 0 416273 Natronomonas moolapensis 1 121 Natronomonas pharaonis 196 1 species 0 2257 2 478 Halomicrobium 0 203135 1 genus 3 1 475 Halomicrobium mukohataei 0 57705 species 4 1 genus 0 146825 Halorhabdus 3 506 146826 0 species 1 317 Halorhabdus utahensis species 430914 0 Halorhabdus tiamatea 1 185 Halorientalis 2 247 genus 1 7 1073987 0 240 1 no rank 0 2648975 Halorientalis sp. IM1011 1 240 species 0 1932360 5 1963 Haloarcula 0 2237 79 1 genus 51589 0 species 1 525 Haloarcula hispanica 0 1932004 species 1 274 Haloarcula taiwanensis 1 383 Haloarcula marismortui 2238 0 species 702 1 2624677 0 no rank 1 702 Haloarcula sp. CBA1115 1592728 0 species 224756 0 class 1 33 49 13352 Methanomicrobia 1 order 22 0 94695 Methanosarcinales 7478 27 62 1 family 0 2206 Methanosarcinaceae 6869 22 genus 101191 0 1 752 0 101192 species 1 752 Methanomethylovorans hollandica 13 4229 Methanosarcina 0 2207 1 genus 84 Methanosarcina mazei 1 822 species 0 2209 Methanosarcina thermophila 145 1 species 2210 0 0 418008 species 1 517 Methanosarcina horonobensis 1 755 Methanosarcina barkeri 2208 0 species 38027 0 species 230 1 Methanosarcina siciliae 1 267 Methanosarcina acetivorans 0 2214 species species 170861 0 Methanosarcina lacustris 133 1 species 2215 0 Methanosarcina vacuolata 321 1 0 2644672 no rank 4 955 1 166 Methanosarcina sp. WWM596 0 1434103 species 426 1 Methanosarcina sp. Kolksee 0 1434099 species species 1434102 0 Methanosarcina sp. WH1 1 126 1434100 0 species 1 237 Methanosarcina sp. MTP4 0 196136 genus 1 178 species 39669 0 Methanosalsum zhilinae 178 1 genus 2220 0 164 1 164 1 Methanolobus psychrophilus 0 420950 species 2 342 genus 2175 0 2177 0 species 80 1 Methanohalophilus halophilus 262 1 Methanohalophilus mahii 0 2176 species 0 2225 genus 255 2 species 0 29291 Methanococcoides burtonii 1 137 0 2226 species 1 118 Methanococcoides methylutens 1 887 genus 2321 0 species 2322 0 Methanohalobium evestigatum 1 887 143067 0 family 1 1 4 587 Methanosaetaceae 586 3 Methanothrix 0 2222 1 genus 2 1 253 Methanothrix soehngenii 0 2223 species 0 301375 species 1 331 Methanosaeta harundinacea 4 1228 Methanocellales 0 570264 1 order 4 family 0 570265 3 1224 2 1 genus 0 570266 Methanocella 3 1224 0 1175445 species 1 1123 Methanocella arvoryzae 0 1175444 species 99 1 Methanocella conradii 17 4613 Methanomicrobiales 2191 0 8 order 1 1198451 0 4 family 1 5 1576 Methanoregulaceae genus 0 475087 1 509 1 509 Methanosphaerula palustris 0 475088 species Methanoregula 3 1063 7 genus 1 395331 0 species 0 882104 Methanoregula formicica 893 1 358766 0 species 163 1 Methanoregula boonei 0 88404 1 family 1 2 762 Methanocorpusculaceae 761 1 genus 0 2192 83984 0 species 1 761 Methanocorpusculum labreanum 1288 7 Methanomicrobiaceae 0 2194 1 family 6 230355 0 genus 1 1 2 96 Methanolacinia species 0 54120 Methanolacinia petrolearia 95 1 16 1 genus 0 45989 Methanoculleus 4 1186 no rank 0 2619537 1 280 1 280 Methanoculleus sp. MAB1 86622 0 species 1 503 Methanoculleus bourgensis 83986 0 species 2198 0 species 387 1 Methanoculleus marisnigri 0 196137 family 2 979 Methanospirillum 979 2 genus 1 1 2202 0 978 1 Methanospirillum hungatei 2203 0 species clade 0 2283794 5880 36 0 183939 class 2069 14 0 2182 order 2069 14 1 family 1 2183 0 Methanococcaceae 6 1083 155862 0 genus 1 205 Methanothermococcus okinawensis 1 205 species 0 155863 4 877 genus 2184 0 species 39152 0 Methanococcus maripaludis 631 1 1 125 Methanococcus vannielii 0 2187 species species 0 2188 Methanococcus voltae 53 1 0 42879 species 68 1 Methanococcus aeolicus family 196117 0 8 986 0 196119 genus 77 1 1 77 Methanotorris igneus 0 2189 species 2 1 genus 0 196118 Methanocaldococcus 909 7 0 67760 species 45 1 Methanocaldococcus infernus species 83171 0 Methanocaldococcus fervens 68 1 species 0 73913 Methanocaldococcus vulcanius 448 1 0 1301915 species 1 172 Methanocaldococcus bathoardescens no rank 0 2641196 1 108 species 644281 0 Methanocaldococcus sp. FS406-22 1 108 species 2190 0 Methanocaldococcus jannaschii 66 1 0 183925 class 22 3811 1 order 1 0 2158 Methanobacteriales 3811 22 Methanobacteriaceae 3763 20 1 1 family 0 2159 genus 2316 0 1 866 species 2317 0 Methanosphaera stadtmanae 1 866 Methanobacterium 1318 8 3 genus 1 2160 0 1 102 Methanobacterium paludis 0 868131 species species 0 59277 Methanobacterium subterraneum 342 1 2 224 no rank 0 2627676 1911685 0 species 142 1 Methanobacterium sp. MZ-A1 Methanobacterium sp. MB1 82 1 species 1379702 0 species 118062 0 Methanobacterium congolense 1 102 Methanobacterium formicicum 153 1 species 2162 0 species 877455 0 Methanobacterium lacus 392 1 1364 6 genus 0 2172 Methanobrevibacter smithii 1 254 species 0 2173 Methanobrevibacter millerae 1 227 species 230361 0 species 0 83816 Methanobrevibacter ruminantium 1 245 2638681 0 no rank 2 478 1 352 Methanobrevibacter sp. AbM4 0 224719 species 1609968 0 species 1 126 Methanobrevibacter sp. YE315 Methanobrevibacter olleyae 160 1 species 294671 0 145260 0 genus 214 4 1 84 no rank 2631116 0 1 84 Methanothermobacter sp. CaT2 866790 0 species Methanothermobacter thermautotrophicus 1 41 species 145262 0 Methanothermobacter marburgensis 1 64 species 145263 0 species 0 145261 Methanothermobacter wolfeii 1 25 2178 0 family 47 1 47 1 2179 0 genus Methanothermus fervidus 1 47 species 2180 0 clade 1783276 0 216 1 1801631 0 phylum 216 1 genus 2490204 0 1 216 1 216 Candidatus Micrarchaeota archaeon Mia14 1920749 0 species clade 1783275 0 42 3697 1 21 phylum 51967 0 1 21 498845 0 genus 498846 0 species 1 21 Candidatus Korarchaeum cryptofilum 1100 8 phylum 651137 0 672 3 0 31932 order 672 3 338190 0 family genus 1993653 0 304 1 304 1 Candidatus Nitrosomarinus catalina 1898749 0 species 368 2 338191 0 genus species 0 1229909 Candidatus Nitrosopumilus sediminis 137 1 Candidatus Nitrosopumilus adriaticus 231 1 species 0 1580092 193 2 class 1643678 0 0 1033996 order 85 1 1 85 0 1033997 family genus 0 497726 1 85 Nitrososphaera viennensis 85 1 species 0 1034015 0 1968909 order 1 108 108 1 family 1968910 0 genus 0 498374 108 1 108 1 Candidatus Nitrosocaldus islandicus 2045011 0 species 3 235 no rank 0 651142 1 178 genus 1593364 0 0 1410606 species 178 1 Candidatus Nitrosopelagicus brevis genus 1825023 0 57 2 Candidatus Nitrosotenuis cloacae 31 1 species 1603555 0 1 26 Candidatus Nitrosotenuis sp. AQ6f 1846278 0 species 2576 33 28889 0 phylum 0 183924 class 33 2576 order 114380 0 11 476 8 281 family 0 2272 2273 0 genus 69 2 2275 0 species 38 1 Desulfurococcus mucosus species 0 94694 Desulfurococcus amylolyticus 31 1 18 1 0 54253 genus Thermosphaera aggregans 18 1 species 0 54254 0 54258 genus 2 74 160233 0 species 26 1 Ignicoccus hospitalis Ignicoccus islandicus 48 1 species 0 54259 85 2 genus 2279 0 species 0 84599 Staphylothermus hellenicus 54 1 1 31 Staphylothermus marinus 2280 0 species 0 477695 genus 35 1 Thermogladius calderae 35 1 species 1200300 0 195 3 0 2307 family 1 28 genus 0 54251 28 1 Pyrolobus fumarii 0 54252 species genus 0 2308 1 82 1 82 Pyrodictium delaneyi 1273541 0 species 85 1 0 54247 genus 1 85 Hyperthermus butylicus 0 54248 species 2266 0 order 500 11 family 2267 0 7 301 30 1 genus 2276 0 species 0 2277 Pyrobaculum islandicum 1 30 1 8 genus 76886 0 8 1 Caldivirga maquilingensis 76887 0 species genus 164450 0 2 116 90 1 Vulcanisaeta distributa 0 164451 species Vulcanisaeta moutnovskia 1 26 species 0 985052 0 2270 1 genus 1 3 147 Thermoproteus Thermoproteus tenax 94 1 species 2271 0 species 0 184117 Thermoproteus uzoniensis 1 52 199 4 0 114378 family genus 2268 0 199 4 1365176 0 species 19 1 Thermofilum adornatus 1 123 Thermofilum uzonense 1550241 0 species 1 18 Thermofilum carboxyditrophus 0 1483572 species 1 39 Thermofilum pendens 0 2269 species 1488 8 2281 0 order 1488 8 family 0 118883 3 326 2284 0 genus 1 49 0 2641160 no rank 49 1 Sulfolobus sp. A20 1891280 0 species species 0 2285 Sulfolobus acidocaldarius 197 1 80 1 Sulfolobus islandicus 0 43080 species 0 41980 genus 2 50 1006005 0 species 16 1 Metallosphaera cuprina 34 1 Metallosphaera sedula 43687 0 species 1 644 12914 0 genus 563177 0 species 1 644 Acidianus hospitalis 1 53 0 2100760 genus 53 1 Sulfolobus solfataricus 0 2287 species 415 1 0 69655 genus Sulfolobus tokodaii 1 415 species 111955 0 3 112 order 0 871006 0 871007 family 1 53 53 1 genus 0 105850 53 1 Acidilobus saccharovorans 242703 0 species 255472 0 family 2 59 Caldisphaera 59 2 1 genus 1 0 200414 Caldisphaera lagunensis 1 58 species 0 200415