members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 4777 17747802 31 31431 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 0 1 name 0 2 4467 Bacteria superkingdom 0 1 17607456 164 5240 phylum 0 10 74152 2763 0 class 447830 4 0 order 4 1783344 2763 2763 1 1783343 4 family 0 1 Endomicrobiaceae 0 1 genus Endomicrobium 1408194 3 5 2762 1162 Candidatus Endomicrobium trichonymphae 0 species 1 1408204 1 1408281 species 0 Endomicrobium proavitum 1595 1195 1 641853 5 Elusimicrobia 1 0 class Elusimicrobiales 0 1 order 4 641854 1 1194 641876 3 family 0 1 Elusimicrobiaceae 1193 6 Elusimicrobium genus 0 1 423604 2 1 1187 1186 species 0 Elusimicrobium minutum 423605 1 99260 1 no rank 0 1282 167965 1 uncultured Termite group 1 bacterium species 0 1282 374 1783270 0 clade 1900725 1042 456828 2 0 phylum 25 1042 0 1 genus Candidatus Cloacimonas 2 456826 1 456827 Candidatus Cloacimonas acidaminovorans 0 species 1017 clade 0 360 68336 1893061 22 1090 0 phylum 14894 132 14894 Chlorobia 0 1 class 191410 22 191411 21 order 0 1 Chlorobiales 14762 105 191412 20 Chlorobiaceae family 0 1 14657 107 98 2538 Prosthecochloris genus 1 0 5 1101 2632826 3 0 no rank 1989 Prosthecochloris sp. CIB 2401 0 species 1868325 1 462 1 1974213 species 0 Prosthecochloris sp. HL-130-GSB 498 1029 Prosthecochloris sp. GSB1 species 0 1 281093 0 species Prosthecochloris aestuarii 1102 1 451 4703 58 4 256319 1 0 genus Chlorobaculum 1630 species 0 Chlorobaculum parvum 274539 1 1843 0 species Chlorobaculum limnaeum 1 274537 1097 1 Chlorobaculum tepidum 0 species 1172 974 2 2 100715 1 0 genus Chloroherpeton 972 species 0 Chloroherpeton thalassium 100716 1 6335 no rank 0 8 274493 Pelodictyon 0 1 genus 1099 3 17 2232 945 Pelodictyon phaeoclathratiforme species 0 34090 1 Pelodictyon luteolum species 0 1 1100 1270 5 1091 0 1 genus Chlorobium 4103 5 643 Chlorobium phaeovibrioides 0 species 1094 1 species 0 Chlorobium phaeobacteroides 1096 1 1886 Chlorobium limicola species 0 1 1092 874 695 Chlorobium chlorochromatii species 0 1 337090 976 331 1 0 phylum Bacteroidetes 1874008 68 147 117743 Flavobacteriia 1 0 class 247915 71 200644 146 Flavobacteriales order 0 1 247844 247 Blattabacteriaceae family 0 1 39782 10 15 11207 145 11192 genus 0 1 Blattabacterium 34098 9 2313 1 164514 species 0 Blattabacterium punctulatus 1181 1653831 1 Blattabacterium cuenoti 0 species 7553 no rank 0 6 2647581 Blattabacterium sp. (Blatta orientalis) 0 species 367806 1 503 Blattabacterium sp. (Periplaneta americana) 0 species 1 367488 942 1548 1 1186051 Blattabacterium sp. (Blaberus giganteus) 0 species 2538 0 species Blattabacterium sp. (Blattella germanica) 1 624186 1 39768 Blattabacterium sp. (Mastotermes darwiniensis) 0 species 629 1316444 1 0 species Blattabacterium sp. (Nauphoeta cinerea) 1393 713 1333713 2 family 0 713 1 267986 2 Owenweeksia genus 1 0 Owenweeksia hongkongensis species 0 253245 1 712 49546 102 Flavobacteriaceae family 0 1 180883 1461 1351 178469 1 genus 0 616991 1 Arenibacter algicola 0 species 1351 10 1713 Zunongwangia 1 0 genus 2 417127 1703 Zunongwangia profunda species 0 1 398743 1649495 2 genus 0 1 Seonamhaeicola 3642 33 2622645 1 0 no rank 3609 1936081 1 Seonamhaeicola sp. S2-3 0 species 3609 3 2160 0 1 genus Muricauda 111500 3 1 516051 species 0 Muricauda lutaonensis 477 1680 species 0 Muricauda ruestringensis 111501 1 825 genus 0 389486 1 0 no rank 2648869 1 825 825 1 1453352 Sediminicola sp. YIK13 0 species 4718 2 292691 5 genus 0 1 Gramella 2126553 1 species 0 Gramella sp. SH35 1366 1358 0 species Gramella forsetii 411153 1 817 1913577 1 species 0 Gramella sp. LPB0144 1 1486245 species 0 Gramella flava 1175 61432 2 no rank 0 4751 1150389 1 species 0 Flavobacteriaceae bacterium UJ101 3773 978 1 531844 0 species Flavobacteriaceae bacterium 3519-10 153265 1 0 genus 1028 1 101385 Aequorivita sublithincola species 0 1028 6161 35 363408 5 Nonlabens genus 1 0 1801 Nonlabens sediminis 0 species 319236 1 2 2615035 0 no rank 3087 1531 Nonlabens sp. MIC269 species 0 1476901 1 1556 2058134 1 Nonlabens sp. MB-3u-79 0 species 0 species Nonlabens dokdonensis 328515 1 1238 1 112040 0 genus 853 853 0 species Zobellia galactanivorans 63186 1 2071 genus 0 2 225842 2071 2644710 2 0 no rank 1 1336794 Formosa sp. Hel1_33_131 species 0 1389 1336795 1 Formosa sp. Hel3_A1_48 0 species 682 3003 336276 1 genus 0 3003 0 no rank 2615019 1 Olleya sp. Bg11-27 0 species 2058135 1 3003 7383 34 5 252356 genus 0 1 Maribacter species 0 Maribacter cobaltidurans 1178778 1 1490 3 2615042 0 no rank 5859 species 0 Maribacter sp. HTCC2170 313603 1 946 0 species Maribacter sp. T28 1 1836467 2195 2718 Maribacter sp. 1_2014MBL_MicDiv 0 species 1644130 1 1016 15 Capnocytophaga genus 0 1 15881 55 1358 species 0 Capnocytophaga gingivalis 1017 1 species 0 Capnocytophaga haemolytica 1 45243 798 28189 1 Capnocytophaga cynodegmi species 0 1262 1 327575 species 0 Capnocytophaga leadbetteri 843 6020 2640652 6 no rank 0 Capnocytophaga sp. oral taxon 864 species 0 1 1316593 837 821 Capnocytophaga sp. H2931 0 species 1 1945657 1086 1 1945658 0 species Capnocytophaga sp. H4358 921 1 209053 0 species Capnocytophaga sp. ChDC OS43 951 1 1705617 species 0 Capnocytophaga sp. oral taxon 323 1316596 1 species 0 Capnocytophaga sp. oral taxon 878 1404 1019 1 Capnocytophaga sputigena 0 species 1773 species 0 Capnocytophaga stomatis 1848904 1 1209 1018 1 Capnocytophaga ochracea 0 species 885 Capnocytophaga canimorsus species 0 28188 1 1678 9 237 genus 1 0 Flavobacterium 24522 140 1 312277 0 species Flavobacterium indicum 3066 Flavobacterium commune 0 species 1 1306519 1719 1517 1 1763534 species 0 Flavobacterium crassostreae 6031 species 0 Flavobacterium columnare 1 996 1581 0 species Flavobacterium branchiophilum 1 55197 986 1 Flavobacterium johnsoniae 0 species 5763 2084 96345 1 species 0 Flavobacterium psychrophilum 2621 1492737 1 species 0 Flavobacterium gilvum 9819 7 4 291183 genus 0 1 Lacinutrix 4129 1486034 1 Lacinutrix venerupis 0 species no rank 0 2 2647285 5683 1 2057808 0 species Lacinutrix sp. Bg11-31 2195 Lacinutrix sp. 5H-3-7-4 species 0 983544 1 3488 2700084 1 genus 0 3046 3046 0 species Lutibacter sp. LPB0138 1850246 1 393005 1 genus 0 2483 2069432 1 Tamlana sp. UJ94 species 0 2483 261827 2 Algibacter 0 1 genus 3021 11 Algibacter alginicilyticus species 0 1 1736674 3010 2528 genus 0 1 83612 Psychroflexus torquis 0 species 57029 1 2528 9903 63 4 104264 Cellulophaga 1 0 genus 1 979 species 0 Cellulophaga lytica 3684 1 59600 Cellulophaga algicola species 0 2681 species 0 Cellulophaga baltica 76594 1 3475 11721 18 5 104267 Tenacibaculum 0 1 genus 584609 1 species 0 Tenacibaculum jejuense 3515 1698 0 species Tenacibaculum maritimum 1 107401 3660 0 species Tenacibaculum dicentrarchi 1 669041 2830 1850252 1 species 0 Tenacibaculum todarodis 143222 2 genus 0 1 Salegentibacter 1618 21 1 2633436 no rank 0 1597 1597 1 1729720 species 0 Salegentibacter sp. T436 0 genus 1 1176327 870 870 no rank 0 2636237 1 Aureitalea sp. RR4-38 0 species 1 2094025 870 genus 0 1 1518147 2870 species 0 Wenyingzhuangia fucanilytica 1790137 1 2870 Polaribacter genus 0 1 6 52959 38 23420 1 996801 Polaribacter reichenbachii species 0 5035 14123 196858 3 0 no rank 4817 species 0 Polaribacter sp. BM10 1 1529069 Polaribacter sp. MED152 species 0 313598 1 3030 Polaribacter sp. ALD11 species 0 2058137 1 6276 4224 species 0 Polaribacter vadi 1774273 1 1 1209327 genus 0 2444 1 1803846 Flavivirga eckloniae 0 species 2444 Dokdonia genus 1 0 326319 4 50 4075 0 species Dokdonia donghaensis 326320 1 1204 2821 no rank 0 2 2615033 Dokdonia sp. 4H-3-7-5 0 species 983548 1 1501 1320 Dokdonia sp. MED134 species 0 313590 1 1691 216431 1 0 genus 1691 313588 1 Croceibacter atlanticus 0 species 4402 286104 2 genus 0 4402 no rank 0 2615021 2 1661 1936080 1 species 0 Winogradskyella sp. J14-2 2741 1 754409 Winogradskyella sp. PG-2 species 0 8987 87 76831 5 Myroides genus 0 1 1775 Myroides profundi 0 species 1 480520 76832 1 Myroides odoratimimus species 0 2344 4781 2 2642485 no rank 0 2444 0 species Myroides sp. A21 1 1583100 2337 1458492 1 Myroides sp. ZB35 0 species 2 358023 Lutibacter 0 1 genus 4197 2 4195 1 1622118 species 0 Lutibacter profundi 1204360 1 0 genus 1485 1485 762954 1 species 0 Siansivirga zeaxanthinifaciens Robiginitalea 0 1 genus 2 252306 5 780 Robiginitalea biformata species 0 1 252307 775 Ichthyobacteriaceae family 1 0 2 1755828 2 1013 1011 genus 0 1755829 1 1 242600 species 0 Ichthyobacterium seriolicida 1011 0 family 22 2762318 50207 Elizabethkingia 0 1 genus 308865 6 186 14885 Elizabethkingia genomosp. 3 species 0 1 1756149 2382 238 1 Elizabethkingia meningoseptica 0 species 2637 Elizabethkingia genomosp. 4 0 species 1756150 1 2354 0 species Elizabethkingia anophelis 1 1117645 4222 3104 1 172045 Elizabethkingia miricola species 0 8883 32 2 28250 0 1 genus Ornithobacterium 8851 1 28251 Ornithobacterium rhinotracheale 0 species 21392 2782232 10 0 no rank 1992 genus 0 2782228 1 1992 Chryseobacterium taklimakanense 0 species 1 536441 59732 9 1 0 genus Chryseobacterium 19400 66 species 0 Chryseobacterium indologenes 253 1 3687 2736 1 558152 0 species Chryseobacterium piperi species 0 Chryseobacterium camelliae 1 1265445 1024 3440 Chryseobacterium glaciei species 0 1 1685010 0 no rank 3 2593645 6271 2066 species 0 Chryseobacterium sp. StRB126 878220 1 1572 species 0 Chryseobacterium sp. IHB B 17019 1 1721091 1 2015076 0 species Chryseobacterium sp. T16E-39 2633 0 species Chryseobacterium gallinarum 1324352 1 2176 2 1013 0 1 genus Weeksella 1444 104 1340 1014 1 0 species Weeksella virosa Riemerella genus 0 1 34084 2 1 3603 3602 0 species Riemerella anatipestifer 34085 1 313602 4 no rank 0 2603 2223 61 2 336809 Candidatus Sulcia 1 0 genus Candidatus Sulcia muelleri species 0 336810 1 2162 0 1 genus Candidatus Walczuchella 1940138 2 1 380 379 species 0 Candidatus Walczuchella monophlebidarum 1415657 1 13 971 0 1 family Crocinitomicaceae 3 1853230 2 332102 Fluviicola genus 0 1 958 5 953 1 191579 Fluviicola taffensis species 0 71 200643 Bacteroidia 1 0 class 1529406 99 Marinilabiliales 1 0 order 11 1970189 4 9602 1936 2 558415 3 0 1 family Marinilabiliaceae 3 1934 0 1 genus Alkalitalea 2 1193324 1931 889453 1 Alkalitalea saponilacus 0 species 1 0 family Salinivirgaceae 3 1970190 4 1721 6 1717 genus 1 0 Salinivirga 1970191 2 1711 0 species Salinivirga cyanobacteriivorans 1307839 1 1 1573805 family 0 4211 4211 0 genus 1 2060722 1717717 1 0 species Marinifilaceae bacterium SPP2 4211 3 1471398 0 1 family Prolixibacteraceae 1730 4 2 1471399 1 0 genus Draconibacterium 1726 6 Draconibacterium orientale 0 species 1 1168034 1720 1 0 order Bacteroidales 171549 59 648 1519705 171552 11 Prevotellaceae family 0 1 90907 18 178 90889 Prevotella 1 0 genus 838 10 0 species Prevotella jejuni 1 1177574 5387 2926 no rank 0 2638335 1 652716 1 species 0 Prevotella sp. oral taxon 299 2926 54546 species 0 Prevotella intermedia 28131 1 species 0 Prevotella denticola 28129 1 4242 Prevotella enoeca species 0 76123 1 2701 Prevotella fusca 0 species 589436 1 4615 5238 Prevotella dentalis species 0 52227 1 5698 1 28132 0 species Prevotella melaninogenica 1 839 0 species Prevotella ruminicola 5358 317152 no rank 0 333046 5 314488 3 909656 genus 0 Bacteroides dorei species 0 357276 1 71372 19221 0 species Bacteroides salanitronis 376805 1 Bacteroides vulgatus species 0 821 1 223895 4 2664 Candidatus Azobacteroides genus 0 1 2 511434 2660 1 511435 Candidatus Azobacteroides pseudotrichonymphae species 0 1103 1 185291 no rank 0 1103 1 1400053 Bacteroidales bacterium CF species 0 90 231944 family 1 0 Tannerellaceae 2005525 7 Parabacteroides genus 0 1 3 375288 223 220945 2649774 1 0 no rank 136717 Parabacteroides sp. CT06 0 species 1 2025876 136717 1 823 Parabacteroides distasonis species 0 84005 195950 3 genus 1 0 Tannerella 10909 32 5275 1 2620507 0 no rank 5275 1 712710 0 species Tannerella sp. oral taxon HOT-286 Tannerella forsythia 0 species 28112 1 5602 13 93692 family 1 0 Rikenellaceae 171550 5 91448 47 2 239759 1 0 genus Alistipes 91401 214856 1 Alistipes finegoldii 0 species genus 1 0 Mucinivorans 2 1611681 6 2231 species 0 Mucinivorans hirudinis 1433126 1 2225 5998 28 171551 4 family 0 1 Porphyromonadaceae 3 836 Porphyromonas genus 0 1 5970 4 1909 Porphyromonas asaccharolytica 0 species 1 28123 1 837 0 species Porphyromonas gingivalis 4057 6 2005520 family 0 6488 307628 2 0 1 genus Petrimonas 2055 6 0 species Petrimonas mucosa 1642646 1 2049 1784836 2 Fermentimonas 1 0 genus 1850 1 species 0 Fermentimonas caenicola 1 1562970 1849 2 294702 Proteiniphilum 1 0 genus 2583 18 1642647 1 Proteiniphilum saccharofermentans species 0 2565 11 654798 Bacteroidaceae family 1 0 815 11 26589 654787 genus 0 1 Bacteroides 816 10 0 species Bacteroides zoogleoformans 1 28119 18381 42705 1 47678 Bacteroides caccae species 0 67104 Bacteroides cellulosilyticus 0 species 1 246787 290053 1 0 species Bacteroides helcogenes 25350 19415 28113 1 0 species Bacteroides heparinolyticus 81484 1 818 Bacteroides thetaiotaomicron 0 species 103201 Bacteroides fragilis 0 species 817 1 112155 1796613 1 species 0 Bacteroides caecimuris 158403 1 28116 species 0 Bacteroides ovatus 8 46901 family 0 1 Barnesiellaceae 2005519 3 46893 103 397864 2 genus 0 1 Barnesiella 397865 1 Barnesiella viscericola 0 species 46790 2545 family 0 2 2005523 Paludibacter genus 1 0 346096 2 8 2545 Paludibacter propionicigenes 0 species 1 185300 2537 67529 3 3 1853231 0 1 family Odoribacteraceae 1 0 genus Odoribacter 2 283168 2 67526 67524 Odoribacter splanchnicus species 0 1 28118 15 10509 Chitinophagia 0 1 class 15 1853228 order 0 1 Chitinophagales 14 1853229 30 10494 563835 13 Chitinophagaceae 1 0 family 10464 199 genus 0 649460 1 1571 477680 1 species 0 Filimonas lacunae 1571 1234 4 1769012 2 0 1 genus Arachidicoccus 1230 no rank 0 1 2636138 1230 Arachidicoccus sp. BS20 species 0 1 1850526 2414 8 379899 3 genus 0 1 Niabella 1220 0 species Niabella soli 1 446683 1186 Niabella ginsenosidivorans species 0 1 1176587 genus 0 2 79328 2240 1433 species 0 Chitinophaga pinensis 1 79329 807 2029983 1 species 0 Chitinophagaceae bacterium 13 2 398041 Flavisolibacter genus 1 0 1056 5 1051 1 1492898 species 0 Flavisolibacter tropicus 2 354354 1 0 genus Niastella 1750 6 1744 354356 1 Niastella koreensis 0 species class 0 1 Saprospiria 1937959 8 13 1869 7 1936988 0 1 order Saprospirales 1856 10 Haliscomenobacteraceae 0 1 family 3 1937961 7 1175 1168 9 2 2349 0 1 genus Haliscomenobacter 1159 0 species Haliscomenobacter hydrossis 2350 1 671 2 89374 3 Saprospiraceae 1 0 family 2 1007 Saprospira 0 1 genus 669 2 0 species Saprospira grandis 1 1008 667 1100069 7 order 1 0 Bacteroidetes Order II. Incertae sedis 6133 147 Rhodothermaceae 0 1 family 6 563843 77 5986 1 0 genus Rhodothermus 2 29548 43 2670 29549 1 Rhodothermus marinus species 0 2627 2225 1 1196022 0 no rank 2225 0 species Rhodothermaceae bacterium RA 1 1779382 1014 2 2 146918 genus 0 1 Salinibacter 1012 Salinibacter ruber species 0 146919 1 58 768503 Cytophagia class 0 1 53618 133 292 53485 Cytophagales 1 0 order 768507 57 4089 10 4 200667 Flammeovirgaceae 0 1 family 949 1 340671 0 no rank 1 1257021 Flammeovirgaceae bacterium 311 0 species 949 4 3130 Flammeovirga 0 1 genus 2 59739 3126 1 2637820 no rank 0 3126 0 species Flammeovirga sp. MY04 1191459 1 3 1937968 Bernardetiaceae family 1 0 4874 3 genus 0 1 Bernardetia 2 1937972 11 4871 4860 Bernardetia litoralis species 0 999 1 54 19317 Hymenobacteraceae family 1 0 16 1853232 8 89966 Hymenobacter 1 0 genus 13673 120 no rank 0 2615202 5 9898 1930 Hymenobacter sp. PAMC 26554 0 species 1484116 1 1 1484118 0 species Hymenobacter sp. PAMC 26628 2339 1697 species 0 Hymenobacter sp. DG25B 1385664 1 2629 1356852 1 0 species Hymenobacter sp. APR13 Hymenobacter sp. DG25A species 0 1 1385663 1303 1 1411621 species 0 Hymenobacter sedentarius 2064 1 1446467 0 species Hymenobacter swuensis 1591 2408 6 323449 3 1 0 genus Pontibacter 1132 1 400092 Pontibacter korlensis 0 species 1 388950 Pontibacter akesuensis 0 species 1270 Rufibacter 0 1 genus 4 1379908 102 3182 2639626 2 0 no rank 2167 839 species 0 Rufibacter sp. DG15C 1379909 1 1 1379910 Rufibacter sp. DG31D species 0 1328 species 0 Rufibacter tibetensis 1 512763 913 3 1501348 1 0 family Amoebophilaceae 1604 5 0 genus 1 273135 453 1 2641185 0 no rank 453 453 249402 1 Cardinium endosymbiont of Encarsia pergandiella 0 species 1146 0 genus 1 281119 1146 1 281120 0 species Candidatus Amoebophilus asiaticus 11182 53 89373 16 family 1 0 Cytophagaceae 1625 1 120831 genus 0 1625 Dyadobacter fermentans species 0 1 94254 996 138 319458 2 Leadbetterella genus 0 1 1 316068 species 0 Leadbetterella byssophila 858 genus 0 1 Runella 2 105 2 1050 1048 1 106 Runella slithyformis 0 species 51 4920 Spirosoma 1 0 genus 107 6 1211326 1 Spirosoma aerolatum species 0 1094 species 0 Spirosoma rigui 564064 1 922 1160 species 0 Spirosoma montaniterrae 1 1178516 924 0 species Spirosoma radiotolerans 1379870 1 0 species Spirosoma sp. HA7 2057025 1 769 1 0 genus Fibrella 2 861914 2 720 718 no rank 0 1 2620963 718 0 species Fibrella sp. ES10-3-2-2 1834519 1 2 978 Cytophaga 0 1 genus 1818 153 1665 1 985 Cytophaga hutchinsonii species 0 1705 2 1853234 3 1 0 family Persicobacteraceae 59740 2 0 1 genus Persicobacter 1703 5 1698 0 no rank 2664020 1 1698 1085624 1 Persicobacter sp. JZB09 species 0 131 7335 Cyclobacteriaceae 0 1 family 563798 9 3 2091 Belliella 1 0 genus 232244 2 2088 species 0 Belliella baltica 232259 1 390846 1 0 genus 997 997 Echinicola vietnamensis 0 species 390884 1 904 2 246875 2 Algoriphagus 0 1 genus Algoriphagus sp. M8-2 species 0 1727163 1 902 Cyclobacterium 1 0 genus 68288 3 158 3212 Cyclobacterium amurskyense 0 species 320787 1 1147 1907 species 0 Cyclobacterium marinum 104 1 3087 0 family 2 2762301 90 3087 0 1 genus Marivirga 869806 2 1 1006 Marivirga tractuosa 0 species 2997 class 0 1 Sphingobacteriia 117747 24 11 24490 59 24479 Sphingobacteriales order 1 0 200666 23 22 84566 0 1 family Sphingobacteriaceae 24420 139 Solitalea genus 0 1 929509 2 5 1700 Solitalea canadensis species 0 1 995 1695 genus 0 1 Pseudopedobacter 2 1649482 120 2571 2451 1 151895 Pseudopedobacter saltans 0 species 4 423349 0 1 genus Mucilaginibacter 4227 34 1741 1 1550579 0 species Mucilaginibacter gotjawali no rank 0 1 2617802 1027 0 species Mucilaginibacter sp. PAMC 26640 1 1300914 1027 1425 Mucilaginibacter sp. BJC16-A31 0 species 1 1234841 7234 29 6 28453 1 0 genus Sphingobacterium 1 1010 species 0 Sphingobacterium mizutaii 956 4 2609468 0 no rank 6249 1076 1 743722 Sphingobacterium sp. 21 0 species 1498 1 2003121 Sphingobacterium sp. G1-14 0 species 2290 species 0 Sphingobacterium sp. ML3W 1538644 1 1385 1933220 1 Sphingobacterium sp. B29 0 species 142 6927 0 1 genus Pedobacter 6 84567 1145 2628915 1 no rank 0 1145 species 0 Pedobacter sp. PACM 27299 1727164 1 1861 188932 1 species 0 Pedobacter cryoconitis Pedobacter steynii 0 species 430522 1 1114 Pedobacter ginsengisoli species 0 363852 1 1135 Pedobacter heparinus 0 species 984 1 1530 84568 1 no rank 0 1622 1622 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 species 0 1 1986952 4159 1134404 7 0 phylum 2 4159 Ignavibacteria class 1 0 7 795747 6 795748 order 1 0 Ignavibacteriales 4157 19 Ignavibacteriaceae 0 1 family 3 795749 13 2441 genus 0 1 Ignavibacterium 795750 2 3 2428 species 0 Ignavibacterium album 591197 1 2425 1697 0 family 1334117 2 1697 1 2 1134403 Melioribacter 0 1 genus 1696 0 species Melioribacter roseus 1 1134405 8 142182 0 phylum 4961 23 4961 0 1 class Gemmatimonadetes 219685 8 Gemmatimonadales 0 1 order 219686 7 76 4938 4862 33 6 219687 Gemmatimonadaceae 1 0 family 1706036 2 Gemmatirosa genus 1 0 2644 9 2635 0 species Gemmatirosa kalamazoonesis 861299 1 Gemmatimonas 1 0 genus 173479 3 21 2185 173480 1 Gemmatimonas aurantiaca 0 species 1133 1031 species 0 Gemmatimonas phototrophica 1 1379270 65842 4 0 phylum 1661 0 1 class Fibrobacteria 4 204430 13 1661 1648 4 3 218872 Fibrobacterales 0 1 order 1644 family 0 204431 2 0 1 genus Fibrobacter 832 2 9 1644 species 0 Fibrobacter succinogenes 1 833 1635 0 clade 2498710 4 2256 phylum 0 67814 4 2256 2256 693071 4 class 0 4 2256 order 1 0 Caldisericales 693072 4 3 693073 1 0 family Caldisericaceae 2252 31 2221 2 2 693074 1 0 genus Caldisericum 2219 species 0 Caldisericum exile 1 693075 2123416 871 1224 2023 phylum 1 0 Proteobacteria 6902 2 1553900 12 Oligoflexia class 1 0 0 1 order Bdellovibrionales 5 213481 42 4000 4 213483 Bdellovibrionaceae 0 1 family 3958 16 28 3942 Bdellovibrio 1 0 genus 3 958 453816 1 Bdellovibrio exovorus 0 species 771 1 959 Bdellovibrio bacteriovorus 0 species 3143 6 2024979 Bacteriovoracales order 1 0 2900 2 0 family 2 1652132 1661 2 1652133 1 0 genus Halobacteriovorax 1661 6 97084 1 Halobacteriovorax marinus species 0 1655 3 263369 family 1 0 Bacteriovoracaceae 1237 1 1236 2 2 146784 genus 0 1 Bacteriovorax 1234 1 960 0 species Bacteriovorax stolpii 1236 888 Gammaproteobacteria 0 1 class 885721 1871 39 6475 order 1 0 Methylococcales 135618 12 79 6436 family 1 0 Methylococcaceae 11 403 762296 1 genus 0 673 Methylovulum psychrotolerans species 0 1 1704499 673 Methylococcus genus 1 0 413 2 32 957 925 Methylococcus capsulatus 0 species 1 414 822 2 39773 2 Methylomicrobium 1 0 genus 1 271065 Methylomicrobium alcaliphilum species 0 820 3905 70 416 5 genus 1 0 Methylomonas 1 421 species 0 Methylomonas methanica 715 0 no rank 1 2608980 1127 Methylomonas sp. DH-1 species 0 1727196 1 1127 1000 1 702114 Methylomonas koyamae species 0 Methylomonas denitrificans 0 species 1 1538553 993 308325 1318 249 91347 Enterobacterales 1 0 order family 0 1 Morganellaceae 22 1903414 40 15949 4 29487 Photorhabdus genus 0 1 2246 91 0 species Photorhabdus asymbiotica 291112 1 916 559 Photorhabdus temperata species 0 574560 1 Photorhabdus luminescens species 0 1 29488 680 genus 0 1 Morganella 581 2 15 1583 1 582 species 0 Morganella morganii 1568 2 637 genus 0 1 Arsenophonus 1517 5 0 species Arsenophonus symbiont of Lipoptena fortisetosa 1 634113 1512 30 4190 Xenorhabdus 0 1 genus 626 6 463 40577 1 0 species Xenorhabdus poinarii 351679 1 species 0 Xenorhabdus hominickii 703 1241 40576 1 Xenorhabdus bovienii species 0 Xenorhabdus doucetiae 0 species 1 351671 957 796 1 628 Xenorhabdus nematophila 0 species Proteus 0 1 genus 583 3 10 3687 1399 1 585 0 species Proteus vulgaris 1 584 Proteus mirabilis species 0 2278 genus 1 0 Providencia 586 4 21 2686 587 1 Providencia rettgeri 0 species 815 781 126385 1 species 0 Providencia alcalifaciens 1069 1 588 Providencia stuartii species 0 173 47834 family 1 0 Yersiniaceae 39 1903411 Rahnella genus 1 0 4 34037 74 3319 2635087 2 no rank 0 1922 1 1805933 Rouxiella sp. ERMR1:05 species 0 785 species 0 Rahnella sp. Y9602 1 741091 1137 1323 species 0 Rahnella aquatilis 34038 1 Rouxiella genus 0 1565532 1 50 11434 203 13 629 1 0 genus Yersinia Yersinia rohdei 0 species 1 29485 911 Yersinia frederiksenii 0 species 29484 1 1809 1 28152 0 species Yersinia kristensenii 845 340 Yersinia aldovae species 0 29483 1 2448 1649845 3 species group 0 633 1 Yersinia pseudotuberculosis species 0 1059 665 Yersinia similis species 0 1 367190 724 Yersinia pestis 0 species 632 1 species 0 Yersinia aleksiciae 1 263819 587 2275 630 1 0 species Yersinia enterocolitica species 0 Yersinia intermedia 631 1 739 1 29486 species 0 Yersinia ruckeri 574 703 2653513 1 no rank 0 703 1839800 1 species 0 Yersinia sp. FDAARGOS_228 613 16 genus 1 0 Serratia 30932 1253 1409 61652 1 species 0 Serratia rubidaea 3316 82996 1 Serratia plymuthica 0 species 1 61651 species 0 Serratia ficaria 1920 11091 no rank 0 8 2647522 488142 1 species 0 Serratia sp. SCBI 1761 1 768490 Serratia sp. AS12 species 0 1071 104623 1 Serratia sp. ATCC 39006 species 0 888 Serratia sp. MYb239 species 0 2033438 1 1189 1758196 1 species 0 Serratia sp. SSNIH1 1621 1999 Serratia sp. FS14 species 0 1327989 1 Serratia sp. FGI94 species 0 1 671990 1491 768493 1 Serratia sp. AS13 0 species 1071 species 0 Serratia liquefaciens 614 1 1209 7772 1 615 species 0 Serratia marcescens 943 Serratia proteamaculans 0 species 1 28151 species 0 Serratia fonticola 1 47917 2019 genus 0 1 Chania 1745211 2 11 734 723 species 0 Chania multitudinisentens 1 1639108 1192 5 929812 2 genus 1 0 Gibbsiella 1187 Gibbsiella quercinecans species 0 1 929813 0 no rank 451511 2 1149 702 2 genus 0 1 Plesiomonas 1149 27 1122 1 703 Plesiomonas shigelloides 0 species 94 44100 0 1 family Erwiniaceae 28 1903409 82986 2 Tatumella genus 1 0 561 23 Tatumella citrea 0 species 1 53336 538 genus 1 0 Wigglesworthia 51228 2 2 3608 51229 1 species 0 Wigglesworthia glossinidia 3606 32199 2 0 1 genus Buchnera 19971 17 19954 Buchnera aphidicola species 0 1 9 567 11584 genus 1 0 Pantoea 11 53335 3138 2630326 3 0 no rank Pantoea sp. PSNIH2 0 species 1484157 1 1189 1024 592316 1 species 0 Pantoea sp. At-9b Pantoea sp. PSNIH1 species 0 1484158 1 925 Pantoea stewartii 0 species 1 66269 722 1 1891675 species 0 Pantoea alhagi 748 1973 Pantoea vagans species 0 1 470934 1142 1 553 species 0 Pantoea ananatis 1720 species group 0 1 1654067 Pantoea agglomerans 0 species 549 1 1720 1235990 1 Candidatus Pantoea carbekii 0 species 870 1076550 1 0 species Pantoea rwandensis 704 2 2100764 0 genus 2341 1125 665914 1 Pantoea gaviniae 0 species 665913 1 Pantoea calida species 0 1216 5941 171 8 551 0 1 genus Erwinia 900 0 species Erwinia billingiae 1 182337 668 552 1 species 0 Erwinia amylovora 782 2622719 1 no rank 0 782 species 0 Erwinia sp. Ejp617 215689 1 987 species 0 Erwinia gerundensis 1619313 1 818 1 338565 0 species Erwinia tasmaniensis 717 1 79967 species 0 Erwinia pyrifoliae 1922217 1 Candidatus Erwinia sp. ErCipseudotaxifoliae species 0 898 10812 26 14 1903412 1 0 family Hafniaceae 2103 50 3 568 Hafnia 0 1 genus 0 species Hafnia alvei 569 1 1550 0 no rank 1 2621980 503 503 1848580 1 species 0 Hafnia sp. CBA7124 472 8123 genus 0 1 Edwardsiella 635 8 1263550 1 species 0 Edwardsiella piscicida 1097 2125 2 2676541 no rank 0 1124 Edwardsiella sp. EA181011 0 species 1578828 1 1001 0 species Edwardsiella sp. LADL05-105 1 1650654 1015 1821960 1 Edwardsiella anguillarum species 0 717 species 0 Edwardsiella hoshinae 93378 1 1775 Edwardsiella tarda species 0 636 1 922 1 67780 Edwardsiella ictaluri 0 species 560 29 82982 2 1 0 genus Obesumbacterium Obesumbacterium proteus species 0 82983 1 531 1 789 Budviciaceae 0 1 family 3 1903416 2 82984 Pragia 0 1 genus 788 4 Pragia fontium species 0 1 82985 784 166219 1322 543 120 Enterobacteriaceae family 0 1 no rank 0 5 36866 4646 Enterobacteriaceae bacterium ENNIH1 species 0 2066051 1 730 Enterobacteriaceae bacterium ENNIH3 species 0 1920128 1 1040 989 species 0 Enterobacteriaceae bacterium ENNIH2 1 1920109 Enterobacteriaceae bacterium strain FGI 57 0 species 693444 1 975 912 0 species Plautia stali symbiont 891974 1 0 1 genus Salmonella 3 590 22 8881 948 Salmonella bongori 0 species 1 54736 7911 1 28901 species 0 Salmonella enterica 547 22 1 0 genus Enterobacter 26330 1547 12 354276 species group 0 19002 7264 species 0 Enterobacter cloacae 550 1 2757714 3 no rank 0 2112 1 1915310 Enterobacter cloacae complex sp. ECNIH7 species 0 679 species 0 Enterobacter cloacae complex bacterium 1 2027919 649 1 2077137 0 species Enterobacter cloacae complex sp. FDA-CDC-AR_0132 784 926 69218 1 0 species Enterobacter cancerogenus 61645 1 species 0 Enterobacter asburiae 2767 158836 3 Enterobacter hormaechei species 1 0 3749 2151 920 1 1812934 0 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' Enterobacter xiangfangensis 0 subspecies 1 1296536 678 299767 1 0 species Enterobacter ludwigii 826 638 0 species Enterobacter cloacae complex 'Hoffmann cluster IV' 1812935 1 720 208224 1 0 species Enterobacter kobei no rank 0 9 2608935 5781 427 0 species Enterobacter sp. E20 1560339 1 Enterobacter sp. Crenshaw species 0 1977566 1 451 Enterobacter sp. CRENT-193 0 species 2051905 1 699 1868135 1 species 0 Enterobacter sp. HK169 437 1 399742 Enterobacter sp. 638 0 species 527 746 1166130 1 Enterobacter sp. R4-368 0 species 1914861 1 0 species Enterobacter sp. SA187 959 0 species Enterobacter sp. FY-07 1 1692238 864 671 1 1827481 Enterobacter sp. ODB01 species 0 3855 55 3 160674 Raoultella 0 1 genus 0 species Raoultella planticola 575 1 1065 2735 Raoultella ornithinolytica 0 species 54291 1 22170 180 5 561 1 0 genus Escherichia 837 1499973 1 Escherichia marmotae 0 species 899 564 1 species 0 Escherichia fergusonii 1 562 Escherichia coli species 0 18517 1737 1 208962 Escherichia albertii 0 species Candidatus Moranella 1 0 genus 2 1048757 1 135 134 1 1048758 species 0 Candidatus Moranella endobia 579 1 0 genus 1064 1 61648 0 species Kluyvera intermedia 1064 36 4350 Kosakonia 1 0 genus 1330547 5 Kosakonia sacchari species 0 1 1158459 1021 208223 1 Kosakonia cowanii 0 species 1282 1 283686 species 0 Kosakonia radicincitans 1122 Kosakonia oryzae species 0 497725 1 889 1330545 4 genus 1 0 Lelliottia 3246 47 765 1907578 1 Lelliottia jeotgali species 0 1104 69220 1 Lelliottia nimipressuralis 0 species 1330 Lelliottia amnigena species 0 61646 1 3506 185 4 620 Shigella genus 1 0 701 0 species Shigella flexneri 1 623 1326 622 1 0 species Shigella dysenteriae 1 2629414 no rank 0 1294 1294 species 0 Shigella sp. PAMC 28760 1 1813821 Shimwellia genus 1 0 1335483 2 1 1380 1379 0 species Shimwellia blattae 563 1 1 984 Candidatus Ishikawaella genus 0 1 409304 2 1 168169 Candidatus Ishikawaella capsulata species 0 983 124 2700 Leclercia genus 0 1 83654 4 742 0 species Leclercia adecarboxylata 1 83655 1834 no rank 0 2627398 2 species 0 Leclercia sp. LSNIH1 1920114 1 1081 1920116 1 Leclercia sp. LSNIH3 0 species 753 21 3979 Pluralibacter 1 0 genus 3 1330546 1425 1 1334193 [Enterobacter] lignolyticus 0 species 2533 1 61647 Pluralibacter gergoviae 0 species Candidatus Riesia genus 0 1 401618 2 15 1009 401619 1 Candidatus Riesia pediculicola species 0 994 570 10 Klebsiella genus 1 0 32949 857 0 species Klebsiella oxytoca 571 1 5160 2575 1463165 1 species 0 Klebsiella quasipneumoniae Klebsiella variicola species 0 244366 1 4686 1134687 1 0 species Klebsiella michiganensis 2906 2026240 1 0 species Klebsiella quasivariicola 1246 2 2608929 no rank 0 2795 1302 0 species Klebsiella sp. LTGPAF-6F 1 1905288 1493 1 1934254 Klebsiella sp. M5al species 0 10162 Klebsiella pneumoniae 0 species 573 1 2562 548 1 Klebsiella aerogenes species 0 142 7668 genus 1 0 Cronobacter 8 413496 1131 species 0 Cronobacter muytjensii 413501 1 834 species 0 Cronobacter malonaticus 413503 1 968 413502 1 Cronobacter turicensis 0 species species 0 Cronobacter dublinensis 413497 1 1060 1163710 1 species 0 Cronobacter condimenti 866 28141 1 species 0 Cronobacter sakazakii 1640 1027 1 535744 0 species Cronobacter universalis 3118 10 158483 2 Cedecea genus 0 1 Cedecea neteri 0 species 1 158822 3108 673 19452 genus 0 1 Citrobacter 544 14 1289 67825 1 0 species Citrobacter rodentium 2644389 2 no rank 0 1323 707 0 species Citrobacter sp. FDAARGOS_156 1702170 1 616 1920110 1 0 species Citrobacter sp. CFNIH10 12294 1344959 7 0 species group 640 2077147 1 Citrobacter freundii complex sp. CFNIH3 0 species 1269 2077149 1 species 0 Citrobacter freundii complex sp. CFNIH9 1428 species 0 Citrobacter werkmanii 1 67827 1 2077148 0 species Citrobacter freundii complex sp. CFNIH4 1362 724 Citrobacter freundii complex sp. CFNIH2 0 species 2066049 1 1 546 Citrobacter freundii 0 species 5396 1475 Citrobacter braakii species 0 57706 1 2061 35703 1 Citrobacter amalonaticus species 0 783 67824 1 Citrobacter farmeri 0 species 1029 Citrobacter koseri species 0 545 1 13475 no rank 0 191675 18 84563 18 clade 0 13475 2266 1682492 1 0 genus 2266 1 1410383 species 0 Candidatus Tachikawaea gelatinosa 7697 clade 0 7 84564 203804 7 0 1 genus Candidatus Blochmannia 7697 5 1315 1 251542 Candidatus Blochmannia chromaiodes species 0 no rank 0 2 711328 1460 700 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus species 0 1505597 1 1 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 species 760 Candidatus Blochmannia vafer species 0 251535 1 2364 1330 Candidatus Blochmannia floridanus 0 species 1 203907 1 101534 0 species Candidatus Blochmannia pennsylvanicus 1223 134 1906659 1 0 genus Candidatus Hoaglandella endobia species 0 1778263 1 134 1034 3 146507 0 clade 1199245 1 species 0 secondary endosymbiont of Ctenarytaina eucalypti 133 300 1 568987 genus 0 species 0 Candidatus Hamiltonella defensa 1 138072 300 601 1 134287 secondary endosymbiont of Heteropsylla cubana species 0 0 genus 1906661 1 380 380 1070130 1 Candidatus Gullanella endobia species 0 6 881 Candidatus Mikella 0 1 genus 1906660 2 Candidatus Mikella endobia species 0 1778264 1 875 2 1906657 genus 1 0 Candidatus Doolittlea 467 6 1 1778262 species 0 Candidatus Doolittlea endobia 461 0 clade 1 199891 616 616 1835721 1 secondary endosymbiont of Trabutina mannipara species 0 20155 73 20 1903410 Pectobacteriaceae 1 0 family Dickeya 0 1 genus 6 204037 245 8730 1 1089444 Dickeya solani species 0 2746 1583 0 species Dickeya dadantii 204038 1 1433 species 0 Dickeya dianthicola 1 204039 1 1778540 0 species Dickeya fangzhongdai 1233 1 204042 Dickeya zeae species 0 1490 7390 190 6 122277 Pectobacterium genus 1 0 554 1 0 species Pectobacterium carotovorum 3044 1 1905730 0 species Pectobacterium parmentieri 1310 640 Pectobacterium wasabiae species 0 1 55208 Pectobacterium polaris 0 species 1 2042057 1293 1 29471 Pectobacterium atrosepticum species 0 913 5 84565 genus 1 0 Sodalis 2805 86 288 Sodalis endosymbiont of Henestaris halophilus species 0 1 1929246 1 63612 species 0 Sodalis glossinidius 664 species 0 Sodalis praecaptivus 1 1239307 1018 749 1486991 1 species 0 Candidatus Sodalis pierantonius 1157 7 71655 2 Brenneria genus 0 1 1150 species 0 Brenneria goodwinii 1 1109412 5 1240482 0 order 3117 1 0 family Orbaceae 1240483 5 15 3117 genus 0 1 Frischella 2 1335631 1 927 0 species Frischella perrara 1 1267021 926 2 1193503 Gilliamella genus 0 1 2175 8 1196095 1 Gilliamella apicola species 0 2167 order 0 1 Pseudomonadales 128 72274 810 174747 133919 846 135621 85 Pseudomonadaceae 0 1 family 455 0 genus 1849530 1 1697053 1 0 species Oblitimonas alkaliphila 455 0 subfamily 3 351 4115 3 352 genus 0 1 Azotobacter 4115 50 353 1 Azotobacter chroococcum species 0 2613 Azotobacter vinelandii species 0 354 1 1452 286 80 0 1 genus Pseudomonas 128503 4692 582 1 244566 species 0 Pseudomonas lurida 0 species Pseudomonas alkylphenolica 1 237609 791 12059 0 species group 136849 8 600 Pseudomonas cichorii species 0 36746 1 1 33069 Pseudomonas viridiflava 0 species 952 547 2775504 1 no rank 0 547 Pseudomonas sp. Lz4W species 0 1 1206777 840 Pseudomonas avellanae species 0 46257 1 Pseudomonas syringae group genomosp. 3 species 0 1 251701 1480 0 species subgroup 251695 1 5119 5119 species 0 Pseudomonas syringae 1 317 2521 2 251698 0 species subgroup 29438 1 species 0 Pseudomonas savastanoi 1243 Pseudomonas amygdali 0 species 1 47877 1278 Pseudomonas cremoricolorata 0 species 157783 1 745 1246 0 species Pseudomonas knackmussii 1 65741 5989 0 species group 2 136842 587753 1 Pseudomonas chlororaphis 0 species 4628 1361 296 1 0 species Pseudomonas fragi 794 216142 1 species 0 Pseudomonas rhizosphaerae Pseudomonas psychrotolerans 0 species 237610 1 1190 9 136843 species group 0 16549 species 0 Pseudomonas mandelii 75612 1 819 0 species Pseudomonas veronii 76761 1 850 851 species 0 Pseudomonas trivialis 200450 1 8982 0 species Pseudomonas fluorescens 1 294 1449 1 47878 Pseudomonas azotoformans 0 species 623 0 species Pseudomonas orientalis 1 76758 630 200451 1 Pseudomonas poae species 0 47879 1 species 0 Pseudomonas corrugata 754 1591 380021 1 species 0 Pseudomonas protegens 643 species 0 Pseudomonas antarctica 219572 1 19904 0 species group 136845 6 719 Pseudomonas plecoglossicida 0 species 70775 1 0 species Pseudomonas monteilii 76759 1 2320 0 species Pseudomonas oryzihabitans 47885 1 1214 11352 0 species Pseudomonas putida 303 1 species 0 Pseudomonas mosselii 78327 1 2557 species 0 Pseudomonas fulva 47880 1 1742 1 312306 Pseudomonas entomophila species 0 829 1583341 1 Pseudomonas cerasi 0 species 779 17469 0 species group 136841 6 1495 Pseudomonas resinovorans species 0 53412 1 1327 1 1232139 0 species subgroup 1149133 1 Pseudomonas furukawaii species 0 1327 1266 43263 1 Pseudomonas alcaligenes 0 species Pseudomonas citronellolis 0 species 1 53408 2934 1 300 species 0 Pseudomonas mendocina 4455 5992 287 1 Pseudomonas aeruginosa 0 species Pseudomonas versuta 0 species 1788301 1 544 1 101564 Pseudomonas alcaliphila species 0 1038 1 157782 0 species Pseudomonas parafulva 1354 104087 1 0 species Pseudomonas frederiksbergensis 2034 1306 Pseudomonas koreensis species 0 198620 1 27064 no rank 0 30 196821 Pseudomonas sp. PONIH3 0 species 1 1636610 1268 69328 1 Pseudomonas sp. VLB120 species 0 724 Pseudomonas sp. MRSN12121 0 species 1 1611770 1167 Pseudomonas sp. FGI182 0 species 1259844 1 842 1 1827300 species 0 Pseudomonas sp. MYb193 543 795 2069256 1 0 species Pseudomonas sp. XWY-1 1028989 1 0 species Pseudomonas sp. StFLB209 1126 Pseudomonas sp. LPH1 species 0 1 1898684 1120 1 1338689 Pseudomonas sp. JY-Q species 0 762 species 0 Pseudomonas sp. S-6-2 1931241 1 876 2083054 1 0 species Pseudomonas sp. LG1D9 635 species 0 Pseudomonas sp. Os17 1 1500686 1310 803 species 0 Pseudomonas sp. LH1G9 1 2083055 584 2083053 1 Pseudomonas sp. SWI44 0 species 1 1981174 Pseudomonas sp. M30-35 0 species 475 Pseudomonas sp. SWI36 species 0 2083052 1 910 782 species 0 Pseudomonas sp. FDAARGOS_380 1 2018067 1397 1283291 1 0 species Pseudomonas sp. URMO17WK12:I11 0 species Pseudomonas sp. CCOS 191 1649877 1 1106 696 1 2049589 Pseudomonas sp. HLS-6 0 species 1856685 1 Pseudomonas sp. TCU-HL1 0 species 1272 1512 1294143 1 Pseudomonas sp. ATCC 13867 species 0 Pseudomonas sp. TKP 0 species 1415630 1 535 635 Pseudomonas sp. SWI6 0 species 1 2083051 1364 Pseudomonas sp. St29 species 0 1 1500687 Pseudomonas sp. CC6-YY-74 species 0 1 1930532 939 Pseudomonas sp. UW4 species 0 1207075 1 632 1 1659194 Pseudomonas sp. GR 6-02 0 species 607 0 species Pseudomonas sp. NC02 1 2067572 776 871 Pseudomonas sp. DR 5-09 species 0 1 1534110 1 930166 0 species Pseudomonas brassicacearum 1532 736 Pseudomonas silesiensis 0 species 1 1853130 0 species group 2 136846 8634 7433 0 species subgroup 1 578833 0 species Pseudomonas stutzeri 316 1 7433 1201 0 species Pseudomonas balearica 74829 1 120 40018 Moraxellaceae family 0 1 42 468 469 25 Acinetobacter genus 0 1 31103 209 Acinetobacter equi species 0 1324350 1 1753 species 0 Acinetobacter schindleri 108981 1 516 species 0 Acinetobacter johnsonii 40214 1 483 0 no rank 196816 7 5102 0 species Acinetobacter sp. NCu2D-2 1 1608473 1064 1 1808001 species 0 Acinetobacter sp. LoGeW2-3 557 667 0 species Acinetobacter sp. TGL-Y2 1 1407071 446 1 1636603 0 species Acinetobacter sp. ACNIH1 1 1646498 Acinetobacter sp. TTH0-4 species 0 814 Acinetobacter sp. ACNIH2 0 species 1758189 1 1212 1 2079596 Acinetobacter sp. SWBY1 0 species 342 0 species Acinetobacter larvae 1789224 1 726 Acinetobacter indicus 0 species 756892 1 514 955 species 0 1 202950 62977 1 0 strain Acinetobacter sp. ADP1 955 1884 Acinetobacter junii species 0 40215 1 Acinetobacter oleivorans species 0 1148157 1 1604 611 species 0 Acinetobacter radioresistens 40216 1 Acinetobacter haemolyticus species 0 1 29430 1509 435 Acinetobacter soli species 0 487316 1 Acinetobacter bereziniae 0 species 106648 1 1201 909768 5 species group 0 13601 5911 0 species Acinetobacter baumannii 470 1 106654 1 0 species Acinetobacter nosocomialis 1253 1922 Acinetobacter calcoaceticus 0 species 471 1 3847 Acinetobacter pittii species 0 1 48296 668 0 species Acinetobacter lactucae 1 1785128 497 11 1 0 genus Psychrobacter 5892 134 0 species Psychrobacter cryohalolentis 330922 1 897 397 45610 1 species 0 Psychrobacter urativorans 483 1 334543 Psychrobacter arcticus species 0 516 species 0 Psychrobacter alimentarius 261164 1 3465 no rank 0 196806 6 Psychrobacter sp. G species 0 1 571800 633 649 1 1699622 0 species Psychrobacter sp. P2G3 558 1 1699624 Psychrobacter sp. P11G5 species 0 367 species 0 Psychrobacter sp. PRwf-1 1 349106 476 1720344 1 Psychrobacter sp. AntiMn-1 species 0 782 1 1028416 Psychrobacter sp. DAB_AL43B species 0 5 475 0 1 genus Moraxella 2903 29 1398 34062 1 species 0 Moraxella osloensis 699 1 386891 species 0 Moraxella bovoculi 508 1 480 0 species Moraxella catarrhalis 29433 1 Moraxella ovis 0 species 269 135615 2 order 0 472 Cardiobacteriaceae family 1 0 2 868 1 472 1 869 0 genus 471 471 1 870 Dichelobacter nodosus species 0 10033 118884 12 0 no rank 2656 1 198346 clade 0 2656 0 species Candidatus Baumannia cicadellinicola 186490 1 1034 5 2 349742 Sedimenticola genus 0 1 0 species Sedimenticola thiotaurini 1543721 1 1029 2697 clade 0 3 32036 genus 0 1 1541743 586 586 386487 1 Candidatus Ruthia magnifica 0 species 410330 1 Calyptogena okutanii thioautotrophic gill symbiont 0 species 1379 732 113267 1 species 0 Bathymodiolus septemdierum thioautotrophic gill symbiont Candidatus Thioglobus genus 0 1 3 655184 50 1914 1 1705394 species 0 Candidatus Thioglobus autotrophicus 642 1 1427364 0 species Candidatus Thioglobus singularis 1222 0 genus 1 1524249 688 688 1249552 1 Pseudohongiella spirulinae 0 species genus 1 0 Thiolapillus 1608298 2 10 1044 1076588 1 0 species Thiolapillus brandeum 1034 67 10645 Cellvibrionales order 0 1 1706369 29 1088 20 4 1706372 Halieaceae 1 0 family 17 1068 Halioglobus 1 0 genus 3 1217416 1 930806 Halioglobus pacificus species 0 531 Halioglobus japonicus 0 species 930805 1 520 family 0 1 Cellvibrionaceae 1706371 12 71 5192 20 1786 0 1 genus Cellvibrio 10 4 Cellvibrio japonicus 0 species 1 155077 646 2 2624793 0 no rank 1120 1987723 1 species 0 Cellvibrio sp. PSBB006 580 540 1 1945512 Cellvibrio sp. PSBB023 0 species 738 4 2 2425 Teredinibacter 0 1 genus 2426 1 0 species Teredinibacter turnerae 734 2 1425 Agarilytica genus 0 1 2 2036021 Agarilytica rhodophyticola 0 species 1737490 1 1423 316625 1 0 genus 437 86304 1 species 0 Saccharophagus degradans 437 genus 1 0 Simiduia 2 447467 8 735 727 447471 1 Simiduia agarivorans 0 species 1706375 7 family 1 0 Spongiibacteraceae 1606 19 630749 2 Spongiibacter genus 0 1 369 13 0 no rank 1 2631504 356 1620392 1 Spongiibacter sp. IMCC21906 0 species 356 1084558 2 Oceanicoccus 0 1 genus 673 16 1 716816 0 species Oceanicoccus sagamiensis 657 genus 1 0 Zhongshania 1434050 2 15 545 530 1470434 1 0 species Zhongshania aliphaticivorans family 1 0 Microbulbiferaceae 1706373 5 12 2692 21 2680 genus 1 0 Microbulbifer 4 48073 878 Microbulbifer thermotolerans species 0 252514 1 1 1769779 Microbulbifer aggregans species 0 900 881 0 species Microbulbifer agarilyticus 260552 1 32 1574 Immundisolibacterales order 1 0 1934945 4 89 1542 0 1 family Immundisolibacteraceae 3 1934946 0 1 genus Immundisolibacter 1934947 2 17 1453 1436 1810504 1 Immundisolibacter cernigliae species 0 32 3328 Acidiferrobacterales 0 1 order 1692040 6 97 3296 Acidiferrobacteraceae 0 1 family 5 1692041 1916 39 1692042 2 Sulfurifustis 0 1 genus 0 species Sulfurifustis variabilis 1 1675686 1877 16 1283 0 1 genus Sulfuricaulis 1744881 2 0 species Sulfuricaulis limicola 1620215 1 1267 72273 33 Thiotrichales 1 0 order 42264 25 34064 15 Francisellaceae family 0 1 34532 52 1772 6 2 1869285 Allofrancisella 1 0 genus 594679 1 Allofrancisella guangzhouensis 0 species 1766 250 32708 1 0 genus Francisella 12 262 28110 1 Francisella philomiragia 0 species 4416 2027 species 0 Francisella halioticida 549298 1 species 0 Francisella sp. CA97-1460 1 1542390 3444 4699 no rank 0 2610885 2 475375 1 species 0 Francisella sp. MA067296 2439 species 0 Francisella sp. FSC1006 1547445 1 2260 0 species Francisella sp. TX077310 1 573570 2823 1 657445 0 species Francisella noatunensis 2826 1351 0 species Francisella persica 954 1 6614 1 263 0 species Francisella tularensis 1 622488 Francisella hispaniensis 0 species 1756 1 573569 species 0 Francisella sp. TX077308 2502 Piscirickettsiaceae family 0 1 13 135616 39 5380 1 1237 genus 0 1486 1486 1238 1 0 species Piscirickettsia salmonis 19 1836 genus 0 1 Cycloclasticus 34067 4 654 1 1329899 0 species Cycloclasticus zancles 1163 no rank 0 2 2621467 597 728003 1 0 species Cycloclasticus sp. PY97N 566 Cycloclasticus sp. P1 species 0 1 385025 704 2 933 0 genus Thiomicrospira cyclica species 0 147268 1 370 Thiomicrospira aerophila 0 species 92245 1 334 277 26 2 28884 genus 0 1 Hydrogenovibrio 1 39765 Hydrogenovibrio crunogenus species 0 251 1038 1 3 40222 genus 1 0 Methylophaga 754477 1 0 species Methylophaga frappieri 270 754476 1 species 0 Methylophaga nitratireducenticrescens 767 2327 6 4 135617 Thiotrichaceae 1 0 family 40751 2 1 0 genus Thioploca 1062 5 40754 1 species 0 Thioploca ingrica 1057 1 1021 genus 0 1259 1259 0 species Beggiatoa leptomitoformis 1 288004 61443 575 54 135614 0 1 order Xanthomonadales 32033 39 Xanthomonadaceae family 1 0 49951 559 1 852 Xylella genus 1 0 2370 2 851 Xylella fastidiosa species 0 2371 1 16746 381 40323 9 0 1 genus Stenotrophomonas 7402 species group 0 1 995085 7402 1 40324 Stenotrophomonas maltophilia 0 species 4531 4 196198 no rank 0 1 2005046 species 0 Stenotrophomonas sp. WZN-1 1119 1 1827305 Stenotrophomonas sp. MYb57 species 0 1197 1298 1904944 1 Stenotrophomonas sp. LM091 species 0 917 1793721 1 species 0 Stenotrophomonas sp. KCTC 12332 768 0 species Stenotrophomonas nitritireducens 1 83617 Stenotrophomonas rhizophila species 0 1 216778 1177 2487 0 species Stenotrophomonas acidaminiphila 1 128780 4 1058 Luteimonas genus 0 1 83614 2 0 species Luteimonas sp. 100111 2006110 1 1054 Lysobacter 0 1 genus 68 5 104 7213 435897 1 species 0 Lysobacter capsici 2444 262324 1 species 0 Lysobacter gummosus 1404 1595 species 0 Lysobacter antibioticus 84531 1 Lysobacter enzymogenes species 0 1 69 1666 3775 84 83618 3 Pseudoxanthomonas 0 1 genus 0 species Pseudoxanthomonas spadix 1 415229 1038 2653 314722 1 Pseudoxanthomonas suwonensis species 0 338 17 Xanthomonas genus 1 0 19748 1055 Xanthomonas fragariae 0 species 1 48664 676 722 56459 1 Xanthomonas vasicola 0 species 3110 2 643453 0 species group 885 Xanthomonas fuscans 0 species 366648 1 species 0 Xanthomonas citri 1 346 2225 species 0 Xanthomonas translucens 343 1 2141 883 56454 1 Xanthomonas hortorum species 0 Xanthomonas campestris species 0 339 1 2598 Xanthomonas phaseoli 0 species 1985254 1 774 1562 Xanthomonas oryzae 0 species 347 1 1093 Xanthomonas perforans 0 species 1 442694 926 species 0 Xanthomonas vesicatoria 56460 1 555 Xanthomonas albilineans 0 species 1 29447 694 1 366650 0 species Xanthomonas alfalfae Xanthomonas axonopodis 0 species 53413 1 617 0 species Xanthomonas sacchari 1 56458 1564 Xanthomonas euvesicatoria species 0 1 456327 778 Rhodanobacteraceae family 1 0 1775411 14 147 10917 Rhodanobacter 0 1 genus 75309 2 16 1499 Rhodanobacter denitrificans species 0 666685 1 1483 887 2233801 1 genus 0 2021234 1 Xanthomonadales bacterium D13 species 0 887 1896 26 2 323413 1 0 genus Dokdonella 323415 1 Dokdonella koreensis 0 species 1870 242605 2 Luteibacter 0 1 genus 1051 15 1036 242606 1 species 0 Luteibacter rhizovicinus 0 1 genus Frateuria 70411 2 13 858 Frateuria aurantia species 0 81475 1 845 genus 1 0 Dyella 231454 4 82 4579 1375 species 0 Dyella jiangningensis 1 1379159 1607 0 species Dyella thiooxydans 1 445710 1515 Dyella japonica 0 species 231455 1 135613 50 order 0 1 Chromatiales 28138 494 family 1 0 Wenzhouxiangellaceae 1676141 3 8 1154 Wenzhouxiangella genus 1 0 1676142 2 36 1146 1110 species 0 Wenzhouxiangella marina 1579979 1 1172 35 4 255526 Halothiobacillaceae family 1 0 47 1137 genus 0 1 Halothiobacillus 109262 3 643 2636392 1 no rank 0 643 Halothiobacillus sp. LS2 species 0 1860122 1 447 Halothiobacillus neapolitanus species 0 1 927 679 2 1738654 family 0 1 679 Woeseia 0 1 genus 2 1738655 678 species 0 Woeseia oceani 1 1548547 family 0 1 Ectothiorhodospiraceae 18 72276 230 11578 1335745 3 Spiribacter genus 1 0 904 22 1335746 1 Spiribacter salinus 0 species 368 514 1335757 1 Spiribacter curvatus species 0 85108 2 Halorhodospira genus 0 1 1141 9 1132 Halorhodospira halophila 0 species 1053 1 Thioalkalivibrio genus 0 1 106633 6 88 5801 186931 1 Thioalkalivibrio nitratireducens species 0 945 1100 0 species Thioalkalivibrio versutus 106634 1 species 0 Thioalkalivibrio paradoxus 108010 1 1013 Thioalkalivibrio sulfidiphilus 0 species 1 1033854 1723 932 1 2621013 0 no rank species 0 Thioalkalivibrio sp. K90mix 396595 1 932 696 6 1765964 2 Acidihalobacter 1 0 genus Acidihalobacter prosperus 0 species 1 160660 690 8 937 0 1 genus Ectothiorhodospira 2 1051 1 2684909 0 no rank 929 929 1 1442136 Ectothiorhodospira sp. BSL-9 0 species 1869 19 2 133193 genus 1 0 Alkalilimnicola 1 351052 species 0 Alkalilimnicola ehrlichii 1850 1427 0 no rank 2 451214 22 1427 Thiohalobacter genus 0 1 2 1273155 1405 species 0 Thiohalobacter thiocyanaticus 585455 1 Chromatiaceae 1 0 family 18 1046 210 10891 85072 2 Allochromatium 0 1 genus 1440 3 1437 Allochromatium vinosum 0 species 1 1049 0 no rank 82569 1 1063 1 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a species 0 1063 9 1342 Nitrosococcus genus 1 0 4 1227 513 Nitrosococcus halophilus species 0 1 133539 419 473531 1 species 0 Nitrosococcus watsonii 401 1 1229 0 species Nitrosococcus oceani Thiodictyon 0 1 genus 2 53392 23 2120 1 1166950 Candidatus Thiodictyon syntrophicum species 0 2097 Marichromatium genus 1 0 85076 2 20 1486 1466 1 37487 Marichromatium purpuratum species 0 45 1225 Thiocystis genus 1 0 2 13724 1180 Thiocystis violascens 0 species 73141 1 964 5 1980513 2 Candidatus Nitrosoglobus genus 1 0 959 1630141 1 0 species Candidatus Nitrosoglobus terrae 1 0 genus Thioflavicoccus 2 156885 13 1041 0 species Thioflavicoccus mobilis 1 80679 1028 449719 2 family 1 0 Granulosicoccaceae 743 5 738 0 genus 1 437504 1 437505 Granulosicoccus antarcticus species 0 738 18 37950 Vibrionales order 0 1 135623 44 37932 131 641 43 family 0 1 Vibrionaceae Grimontia 1 0 genus 246861 2 12 708 696 1 673 Grimontia hollisae 0 species genus 1 0 Paraphotobacterium 2 2042066 3 2741 2738 Paraphotobacterium marinum 0 species 1755811 1 30 662 Vibrio genus 1 0 28562 466 1409 Vibrio tritonius species 0 1435069 1 0 species group 1891919 1 485 29498 1 0 species Vibrio tubiashii 485 1514 0 species Vibrio coralliilyticus 1 190893 10256 0 species group 10 717610 1052 species subgroup 0 2 2315253 Vibrio antiquarius 0 species 150340 1 308 Vibrio diabolicus 0 species 50719 1 744 1 670 Vibrio parahaemolyticus species 0 1471 1 696485 Vibrio owensii 0 species 614 1 766224 Vibrio jasicida 0 species 646 Vibrio natriegens species 0 1 691 1106 1722 0 species Vibrio campbellii 680 1 species 0 Vibrio alginolyticus 663 1 2337 1 190895 0 species Vibrio rotiferianus 367 1 669 species 0 Vibrio harveyi 941 1002 2614977 2 no rank 0 0 species Vibrio sp. 2521-89 1 2014742 561 1 1116375 species 0 Vibrio sp. EJY3 441 1 553239 0 species Vibrio breoganii 542 620 Vibrio hyugaensis species 0 1534743 1 889 species 0 Vibrio scophthalmi 1 45658 1005 666 1 Vibrio cholerae 0 species 947 1 55601 Vibrio anguillarum species 0 646 212663 1 Vibrio tasmaniensis 0 species Vibrio gazogenes species 0 1 687 961 2949 Vibrio vulnificus 0 species 672 1 787 1 28173 Vibrio nigripulchritudo species 0 676 1 species 0 Vibrio fluvialis 928 466 species 0 Vibrio qinghaiensis 2025808 1 558 Vibrio tapetis 0 species 52443 1 1451 674 1 0 species Vibrio mimicus 1 29494 Vibrio furnissii species 0 681 657 4 Photobacterium genus 1 0 2867 8 962 1 74109 species 0 Photobacterium profundum 0 species Photobacterium damselae 1 38293 939 0 species Photobacterium gaetbulicola 1295392 1 958 2923 8 4 511678 0 1 genus Aliivibrio 1040 1 668 Aliivibrio fischeri species 0 641 1 40269 Aliivibrio salmonicida 0 species Aliivibrio wodanis 0 species 80852 1 1234 18624 20 118969 19 1 0 order Legionellales 9 16105 1 0 family Legionellaceae 14 444 genus 0 1 465 1087 Tatlockia micdadei species 0 451 1 1087 12 445 Legionella 0 1 genus 15009 23 893 1 1867846 0 species Legionella clemsonensis 5430 0 species Legionella pneumophila 1 446 1058 species 0 Legionella lansingensis 1 45067 0 species Legionella longbeachae 450 1 1037 29423 1 species 0 Legionella oakridgensis 882 Legionella sainthelensi species 0 1 28087 1308 588 species 0 Legionella endosymbiont of Polyplax serrata 1 2005262 species 0 Legionella spiritensis 452 1 478 1033 1 449 0 species Legionella hackeliae 1288 species 0 Legionella fallonii 1 96230 Legionella waltersii species 0 1 66969 991 94 2499 1 0 family Coxiellaceae 4 118968 genus 0 776 2 1880 Coxiella burnetii species 0 1 777 1326 554 1 2676648 no rank 0 0 species Coxiella endosymbiont of Amblyomma americanum 325775 1 554 525 134284 1 0 no rank 1592897 1 Coxiella-like endosymbiont 0 species 525 0 no rank 2 33811 2412 1 83406 0 species gamma proteobacterium HdN1 1109 1303 endosymbiont of unidentified scaly snail isolate Monju species 0 1248727 1 0 1 order Aeromonadales 135624 29 177 35799 28 84642 Aeromonadaceae 1 0 family 35622 297 21 2136 Zobellella genus 1 0 347533 2 2115 1 347534 Zobellella denitrificans 0 species 1 0 genus Tolumonas 2 43947 1 630 629 Tolumonas auensis 0 species 1 43948 642 18 Aeromonas 1 0 genus 29879 1912 Aeromonas salmonicida species 0 645 1 2913 1 648 Aeromonas caviae species 0 784 0 no rank 257493 8 8037 980 1758179 1 Aeromonas sp. ASNIH5 0 species 1 1636606 0 species Aeromonas sp. ASNIH1 730 Aeromonas sp. ASNIH7 species 0 1 1920107 1065 0 species Aeromonas sp. CA23 1 2033032 1383 770 Aeromonas sp. ASNIH2 species 0 1636607 1 1138 species 0 Aeromonas sp. CU5 2033033 1 1 1636608 Aeromonas sp. ASNIH3 0 species 733 1238 Aeromonas sp. ASNIH4 0 species 1 1636609 Aeromonas dhakensis species 0 196024 1 1394 Aeromonas media species 0 1 651 960 3091 654 1 species 0 Aeromonas veronii 948519 1 0 species Aeromonas rivipollensis 1133 1307 Aeromonas aquatica 0 species 558964 1 0 species Aeromonas hydrophila 644 1 7182 652 1 species 0 Aeromonas schubertii 1166 129577 2 Oceanimonas genus 0 1 1782 4 1778 1 2636315 no rank 0 1778 Oceanimonas sp. GK1 0 species 1 511062 13 898 genus 0 1 Oceanisphaera 3 225143 540 species 0 Oceanisphaera profunda 1 1416627 0 species Oceanisphaera sp. AMac2203 1903694 1 345 17 882 order 0 1 Nevskiales 1775403 4 7 Sinobacteraceae 0 family 1 568386 0 family 2 2689614 858 9 858 0 1 genus Steroidobacter 469322 2 849 1 465721 0 species Steroidobacter denitrificans 69835 204 135622 104 Alteromonadales 0 1 order 8 7500 Colwelliaceae family 1 0 267889 9 1518149 2 genus 0 1 Thalassotalea 919 38 881 1 1763536 0 species Thalassotalea crassostreae 20 6573 Colwellia genus 0 1 28228 6 species 0 Colwellia beringensis 1967665 1 1331 3770 0 no rank 196834 3 0 species Colwellia sp. MT41 1 58049 1487 1237 species 0 Colwellia sp. PAMC 20917 1816218 1 1046 1 1816219 0 species Colwellia sp. PAMC 21821 1452 28229 1 Colwellia psychrerythraea 0 species 1 0 family Psychromonadaceae 267894 4 1 2127 2126 7 3 67572 1 0 genus Psychromonas 882 1 2614957 no rank 0 314282 1 Psychromonas sp. CNPT3 0 species 882 1237 1 357794 0 species Psychromonas ingrahamii 41 21348 Pseudoalteromonadaceae family 1 0 25 267888 53246 24 genus 0 1 Pseudoalteromonas 21307 254 Pseudoalteromonas tetraodonis 0 species 43659 1 612 712 1 267375 Pseudoalteromonas marina 0 species 976 314281 1 0 species Pseudoalteromonas tunicata 614 1 43657 Pseudoalteromonas luteoviolacea 0 species 721 species 0 Pseudoalteromonas nigrifaciens 28109 1 1467 Pseudoalteromonas spongiae 0 species 1 298657 1 247523 0 species Pseudoalteromonas aliena 1128 species 0 Pseudoalteromonas atlantica 1 288 769 species 0 Pseudoalteromonas phenolica 1 161398 1141 1282 Pseudoalteromonas translucida species 0 1 166935 1348114 1 0 species Pseudoalteromonas piratica 1248 719 176102 1 Pseudoalteromonas agarivorans 0 species 1830 28107 1 Pseudoalteromonas espejiana species 0 528 species 0 Pseudoalteromonas haloplanktis 1 228 species 0 Pseudoalteromonas arctica 1 394751 774 Pseudoalteromonas piscicida 0 species 1 43662 525 Pseudoalteromonas rubra species 0 43658 1 597 no rank 0 194690 5 4492 1 1761891 Pseudoalteromonas sp. 13-15 species 0 821 1 1514074 Pseudoalteromonas sp. NC201 0 species 675 731 234831 1 Pseudoalteromonas sp. SM9913 0 species 0 species Pseudoalteromonas sp. Bsw20308 283699 1 1369 1 1720343 species 0 Pseudoalteromonas sp. 1_2015MBL_MicDiv 896 918 1 152297 Pseudoalteromonas issachenkonii species 0 3 1374 Ferrimonadaceae 0 1 family 3 267892 genus 1 0 Ferrimonas 44011 2 35 1371 1 44012 0 species Ferrimonas balearica 1336 25 267890 Shewanellaceae 0 1 family 15736 37 genus 0 1 Shewanella 24 22 550 15699 903 species 0 Shewanella sediminis 1 271097 no rank 0 196818 6 2649 species 0 Shewanella sp. WE21 2029986 1 793 254 60481 1 Shewanella sp. MR-7 0 species Shewanella sp. MR-4 species 0 60480 1 252 1 2059264 0 species Shewanella sp. Pdp11 552 species 0 Shewanella sp. W3-18-1 351745 1 394 404 Shewanella sp. ANA-3 0 species 94122 1 404011 1 species 0 Shewanella piezotolerans 753 805 0 species Shewanella frigidimarina 56812 1 472 species 0 Shewanella marisflavi 1 260364 Shewanella woodyi 0 species 1 60961 858 Shewanella japonica species 0 1 93973 885 Shewanella baltica species 0 1 62322 1724 1 271098 species 0 Shewanella halifaxensis 965 species 0 Shewanella amazonensis 60478 1 857 528 Shewanella oneidensis species 0 70863 1 305 0 species Shewanella bicestrii 2018305 1 631 1 192073 Shewanella denitrificans 0 species 359303 1 Shewanella loihica species 0 671 60217 1 species 0 Shewanella violacea 717 70864 1 Shewanella pealeana 0 species 418 Shewanella putrefaciens 0 species 24 1 445 563 225848 1 0 species Shewanella psychrophila 0 1 family Moritellaceae 3 267891 2 1334 genus 1 0 Moritella 2 58050 2 1332 Moritella viscosa 0 species 80854 1 1330 Idiomarinaceae 1 0 family 6 267893 4 2276 5 135575 Idiomarina genus 1 0 2272 3 species 0 Idiomarina loihiensis 135577 1 947 1 1096243 0 species Idiomarina piscisalsi 359 963 no rank 0 2614829 2 1 2100422 Idiomarina sp. OT37-5b 0 species 360 Idiomarina sp. X4 species 0 2055892 1 603 17936 151 72275 28 Alteromonadaceae 0 1 family 1230 4 89404 3 1 0 genus Glaciecola 409 2618684 1 no rank 0 409 983545 1 Glaciecola sp. 4H-3-7+YE-5 0 species 1 300231 Glaciecola nitratireducens 0 species 817 1751872 2 1 0 genus Lacimicrobium 884 24 860 species 0 Lacimicrobium alkaliphilum 1526571 1 10 226 Alteromonas 0 1 genus 6824 39 589873 1 Alteromonas australica species 0 616 0 species Alteromonas macleodii 28108 1 1481 1 715451 Alteromonas naphthalenivorans species 0 597 1558 no rank 0 3 2614992 1777491 1 Alteromonas sp. Mac1 species 0 776 459 2058133 1 0 species Alteromonas sp. MB-3u-76 323 species 0 Alteromonas sp. RW2A1 1917158 1 species 0 Alteromonas mediterranea 1 314275 1042 1 233316 Alteromonas stellipolaris species 0 817 674 1 287094 Alteromonas addita species 0 485 261825 1 genus 0 1 680279 species 0 Agarivorans gilvus 485 0 genus 1 1621534 866 326544 1 0 species Paraglaciecola psychrophila 866 genus 0 1 Marinobacter 2742 10 61 7496 625 0 species Marinobacter similis 1 1420916 0 species Marinobacter salinus 1874317 1 624 802 species 0 Marinobacter salarius 1 1420917 1407 species 0 Marinobacter hydrocarbonoclasticus 1 2743 803 0 species Marinobacter adhaerens 1033846 1 750 330734 1 Marinobacter psychrophilus species 0 83889 3 0 no rank 2424 Marinobacter sp. LQ44 0 species 1 1749259 864 490759 1 species 0 Marinobacter sp. BSs20148 736 824 species 0 Marinobacter sp. CP1 1 1671721 354 37589 Oceanospirillales 0 1 order 70 135619 255527 5 family 0 1 Saccharospirillaceae 1429 6 10 620 0 1 genus Reinekea 230494 2 610 species 0 Reinekea forsetii 1 1336806 2 1445504 Gynuella 0 1 genus 803 12 1445505 1 Gynuella sunshinyii 0 species 791 6 1920240 Kangiellaceae 1 0 family 2612 32 2580 69 261963 5 Kangiella genus 1 0 699 1561924 1 0 species Kangiella profundi 1 914150 Kangiella geojedonensis 0 species 331 646 1 261964 Kangiella koreensis 0 species 1144748 1 species 0 Kangiella sediminilitoris 835 88 5106 Oceanospirillaceae 1 0 family 12 135620 11 2070 Marinomonas 0 1 genus 4 28253 no rank 0 1 196814 554 1 400668 Marinomonas sp. MWYL1 0 species 554 489 Marinomonas posidonica species 0 936476 1 1 119864 Marinomonas mediterranea species 0 1016 1051 3 2 48075 1 0 genus Marinobacterium 1048 0 species Marinobacterium aestuarii 1 1821621 426 4 2 1537406 Bacterioplanes 0 1 genus species 0 Bacterioplanes sanyensis 1249553 1 422 598 1 187492 genus 0 598 Thalassolituus oleivorans 0 species 187493 1 873 4 2 188907 Oleispira 1 0 genus Oleispira antarctica 0 species 188908 1 869 21219 299 32 28256 family 1 0 Halomonadaceae 204286 2 Cobetia genus 1 0 1348 9 Cobetia marina species 0 28258 1 1339 923 14 2 376488 genus 0 1 Halotalea 909 species 0 Halotalea alkalilenta 376489 1 217 12521 genus 0 1 Halomonas 2745 15 500 213554 1 species 0 Halomonas campaniensis 2609666 8 no rank 0 6081 species 0 Halomonas sp. 1513 1883416 1 1327 430 1962264 1 Halomonas sp. 'Soap Lake #7' 0 species 1 1118153 Halomonas sp. GFAJ-1 species 0 519 1 1971364 Halomonas sp. GT 0 species 436 430 1 1949203 0 species Halomonas sp. 'Soap Lake #6' Halomonas sp. KO116 0 species 1 1504981 656 1364 Halomonas sp. SF2003 0 species 1 2136172 919 1610576 1 Halomonas sp. R57-5 0 species 0 species Halomonas huangheensis 1178482 1 715 1519 475662 1 Halomonas beimenensis species 0 1056 species 0 Halomonas hydrothermalis 115561 1 1372 1 1897729 0 species Halomonas aestuarii Halomonas chromatireducens species 0 507626 1 1061 54 1260 Salinicola genus 0 1 2 404432 1206 0 species Salinicola tamaricis 1771309 1 2052 5 114403 no rank 0 0 genus 1 235572 569 1 91844 Candidatus Portiera aleyrodidarum species 0 569 1495768 2 Candidatus Evansia 1 0 genus 1373 4 1369 species 0 Candidatus Evansia muelleri 1495769 1 110 1 2 114185 genus 0 1 Candidatus Carsonella 109 114186 1 Candidatus Carsonella ruddii species 0 778 10 2 42054 1 0 genus Chromohalobacter 158080 1 Chromohalobacter salexigens 0 species 768 2038 17 3 504090 0 1 genus Kushneria 898 species 0 Kushneria marisflavi 1 157779 698828 1 species 0 Kushneria konosiri 1123 family 1 0 Alcanivoracaceae 224372 9 71 5232 933 26 2 2025617 Ketobacter 0 1 genus 1 1917421 Ketobacter alkanivorans species 0 907 59753 6 Alcanivorax 0 1 genus 4228 65 species 0 Alcanivorax borkumensis 59754 1 407 1259 1306787 1 Alcanivorax pacificus species 0 1094342 1 species 0 Alcanivorax xenomutans 1076 444 2638842 1 no rank 0 1 1113728 species 0 Alcanivorax sp. NBRC 101098 444 977 species 0 Alcanivorax dieselolei 285091 1 831 2 191033 family 0 28 831 genus 0 1 Oleiphilus 2 141450 1 141451 Oleiphilus messinensis 0 species 803 806 4 3 224379 Hahellaceae family 1 0 genus 1 0 Hahella 2 158481 3 802 799 158327 1 species 0 Hahella chejuensis 1 0 order Pasteurellales 31 135625 9 30198 312 30189 family 0 1 Pasteurellaceae 30 712 745 3 Pasteurella 1 0 genus 3706 27 0 species Pasteurella multocida 747 1 2500 1 754 Pasteurella dagmatis species 0 1179 1407 0 genus 476528 1 1407 Bibersteinia trehalosi species 0 1 47735 2 1141 Gallibacterium genus 1 0 155493 2 Gallibacterium anatis species 0 1 750 1139 3872 28 75984 4 Mannheimia 0 1 genus 802 1 2645054 no rank 0 802 1432056 1 species 0 Mannheimia sp. USDA-ARS-USMARC-1261 1379 Mannheimia varigena 0 species 1 85404 species 0 Mannheimia haemolytica 1 75985 1663 713 5 Actinobacillus 0 1 genus 5185 42 1664 1 716 species 0 Actinobacillus suis 715 1 Actinobacillus pleuropneumoniae 0 species 1469 0 species Actinobacillus succinogenes 1 67854 557 1 718 Actinobacillus equuli 0 species 1453 0 1 genus Aggregatibacter 3 416916 54 1877 0 species Aggregatibacter actinomycetemcomitans 714 1 986 732 1 Aggregatibacter aphrophilus 0 species 837 724 6 Haemophilus 1 0 genus 7402 44 481 Haemophilus pittmaniae species 0 249188 1 730 1 0 species [Haemophilus] ducreyi 1552 Haemophilus influenzae 0 species 1 727 3519 1139 2609962 1 0 no rank 1139 1 712310 0 species Haemophilus sp. oral taxon 036 667 0 species Haemophilus parainfluenzae 1 729 9 2064 Glaesserella 0 1 genus 2 2094023 738 1 0 species Glaesserella parasuis 2055 2 214906 0 1 genus Histophilus 1937 1 1936 731 1 species 0 Histophilus somni 0 genus 1 697331 1286 1286 1 157673 [Mannheimia] succiniciproducens species 0 28211 559 0 1 class Alphaproteobacteria 485550 1721 356 208 Rhizobiales order 1 0 197020 2007 18 772 Bartonellaceae 1 0 family 11751 47 17 773 1 0 genus Bartonella 11704 279 572 1 85701 0 species Bartonella tribocorum 473 1 803 Bartonella quintana 0 species 970 1 774 0 species Bartonella bacilliformis 4775 2645622 6 0 no rank 775 species 0 Bartonella sp. JB15 1933906 1 1933910 1 0 species Bartonella sp. A1379B 549 0 species Bartonella sp. 1-1C 1 515256 765 1 1933912 species 0 Bartonella sp. Raccoon60 990 773 species 0 Bartonella sp. JB63 1 1933907 1 1933904 Bartonella sp. WD16.2 species 0 923 Bartonella clarridgeiae species 0 56426 1 560 375 1 1318743 Bartonella ancashensis species 0 1 33045 Bartonella grahamii species 0 1256 Bartonella australis 0 species 1 388640 251 1190 1686310 1 Bartonella apis 0 species 33047 1 Bartonella vinsonii 0 species 376 38323 1 Bartonella henselae species 0 627 Beijerinckiaceae family 0 1 45404 5 1 1543 120652 2 1 0 genus Methylocella 1026 9 1 199596 Methylocella silvestris 0 species 1017 genus 1 0 Beijerinckia 2 532 1 516 1 533 species 0 Beijerinckia indica 515 Aurantimonadaceae 1 0 family 255475 7 22 5800 genus 0 1 Martelella 293088 4 155 4533 1383 no rank 0 1 2629616 Martelella sp. AD-3 0 species 1 686597 1383 1389 293089 1 species 0 Martelella mediterranea 1606 1 1486262 Martelella endophytica species 0 414371 2 Aureimonas 1 0 genus 1245 17 1228 1 2615206 0 no rank 1349819 1 0 species Aureimonas sp. AU20 1228 289 18627 Phyllobacteriaceae 1 0 family 69277 20 11 1078 Hoeflea 0 1 genus 2 274591 0 no rank 1 2614931 1067 1067 Hoeflea sp. IMCC20628 0 species 1620421 1 16 901 Phyllobacterium genus 0 1 2 28100 885 1867719 1 species 0 Phyllobacterium zundukense 1072 22 245876 2 Nitratireductor genus 1 0 472175 1 Nitratireductor basaltis 0 species 1050 449972 2 Chelativorans genus 1 0 1007 16 no rank 0 2643807 1 991 991 0 species Chelativorans sp. BNC1 1 266779 31988 2 Aminobacter 1 0 genus 1604 21 1583 83263 1 Aminobacter aminovorans 0 species Mesorhizobium genus 0 1 68287 9 398 12676 Mesorhizobium japonicum 0 species 2066070 1 1703 1273 1 536018 0 species Mesorhizobium australicum 1475 no rank 0 1 325217 1475 1 278153 0 species Mesorhizobium sp. WSM1497 2102 39645 1 Mesorhizobium ciceri 0 species 1474 Mesorhizobium amorphae species 0 71433 1 1114 species 0 Mesorhizobium sp. B7 1670800 1 species 0 Mesorhizobium opportunistum 1 593909 1409 1728 0 species Mesorhizobium loti 1 381 family 1 0 Hyphomicrobiaceae 45401 19 113 12124 genus 1 0 Devosia 46913 4 102 4007 3905 196773 3 0 no rank 1643450 1 0 species Devosia sp. H5989 1518 1584 Devosia sp. A16 0 species 1 1736675 803 Devosia sp. I507 0 species 2083786 1 418 11 2 119044 1 0 genus Filomicrobium 1 1608628 Candidatus Filomicrobium marinum species 0 407 1029 24 59282 2 Blastochloris 1 0 genus 1005 species 0 Blastochloris viridis 1 1079 60 3459 Hyphomicrobium 1 0 genus 81 4 species 0 Hyphomicrobium denitrificans 1 53399 1096 1121 no rank 0 2619925 1 species 0 Hyphomicrobium sp. MC1 1 717785 1121 1 1427356 Hyphomicrobium nitrativorans 0 species 1182 11 793 Rhodomicrobium 0 1 genus 1068 2 782 1 1069 Rhodomicrobium vannielii 0 species 1503 29 2 29407 Rhodoplanes genus 1 0 1474 1 2619116 no rank 0 1474 Rhodoplanes sp. Z2-YC6860 species 0 674703 1 802 20 1082930 2 0 1 genus Pelagibacterium 531813 1 Pelagibacterium halotolerans 0 species 782 0 1 family Methylobacteriaceae 15 119045 124 21473 genus 1 0 Methylobacterium 407 9 760 12677 1 270351 0 species Methylobacterium aquaticum 1833 1276 334852 1 species 0 Methylobacterium oryzae 4418 no rank 0 2615210 3 1372 1 925818 Methylobacterium sp. AMS5 species 0 0 species Methylobacterium sp. 4-46 1 426117 1716 1 1479019 Methylobacterium sp. C1 species 0 1330 31998 1 0 species Methylobacterium radiotolerans 1544 1239 species 0 Methylobacterium phyllosphaerae 418223 1 114616 1 Methylobacterium nodulans 0 species 1607 1614 58 2 186650 genus 1 0 Microvirga 1556 1882682 1 species 0 Microvirga ossetica genus 0 2282523 3 7058 2269 223967 1 Methylobacterium populi 0 species 1117 0 species Methylobacterium zatmanii 29429 1 3672 408 1 Methylobacterium extorquens 0 species 3562 0 no rank 119042 6 1505 31 1572860 2 Hartmannibacter 1 0 genus Hartmannibacter diazotrophicus species 0 1482074 1 1474 2 1734920 Pseudorhodoplanes 0 1 genus 898 16 1 1235591 Pseudorhodoplanes sinuspersici species 0 882 1484898 2 Methyloceanibacter genus 1 0 1159 54 1105 1 1384459 Methyloceanibacter caenitepidi species 0 41294 26 family 1 0 Bradyrhizobiaceae 37095 433 62 8383 genus 0 1 Rhodopseudomonas 2 1073 8321 1 1076 Rhodopseudomonas palustris 0 species 1 0 genus Nitrobacter 3 911 27 1495 634 0 species Nitrobacter winogradskyi 1 913 834 species 0 Nitrobacter hamburgensis 1 912 18649 520 374 11 Bradyrhizobium 0 1 genus 1 44255 Bradyrhizobium oligotrophicum species 0 1543 1208 0 species Bradyrhizobium icense 1 1274631 1 375 species 0 Bradyrhizobium japonicum 2510 10250 no rank 0 6 2631580 1 376 species 0 Bradyrhizobium sp. 1512 1870 Bradyrhizobium sp. BTAi1 0 species 1 288000 1922 0 species Bradyrhizobium sp. ORS 278 1 114615 2057741 1 Bradyrhizobium sp. SK17 species 0 1681 1614 species 0 Bradyrhizobium sp. ORS 285 115808 1 1651 1 1223566 0 species Bradyrhizobium sp. CCGE-LA001 1355477 1 Bradyrhizobium diazoefficiens species 0 2618 839 32 1649510 2 genus 1 0 Variibacter Variibacter gotjawalensis 0 species 1 1333996 807 114 6258 Bosea 1 0 genus 85413 5 1732 1526658 1 Bosea vaviloviae species 0 0 no rank 2653178 3 4412 Bosea sp. AS-1 species 0 2015316 1 1432 1746 1842539 1 Bosea sp. RAC05 0 species 1234 species 0 Bosea sp. PAMC 26642 1 1792307 14 1038 Oligotropha 1 0 genus 40136 2 40137 1 Oligotropha carboxidovorans 0 species 1024 0 1 family Xanthobacteraceae 335928 7 67 5341 29 1890 Azorhizobium 0 1 genus 2 6 species 0 Azorhizobium caulinodans 1 7 1861 44 1686 genus 1 0 Starkeya 2 152053 1642 1 921 0 species Starkeya novella 279 2 Xanthobacter genus 1 0 1698 45 1653 1 280 species 0 Xanthobacter autotrophicus 20 118882 Brucellaceae 0 1 family 6886 45 1 0 genus Brucella 234 14 1349 3118 Brucella ceti 0 species 1 120577 162 235 1 Brucella abortus species 0 89 29459 1 species 0 Brucella melitensis 90 200 Brucella vulpis species 0 981386 1 136 29461 1 0 species Brucella suis 154 1 120576 0 species Brucella pinnipedialis 168 Brucella canis 0 species 36855 1 80 444163 1 species 0 Brucella microti 615 4 2632610 0 no rank 190 Brucella sp. 09RB8471 species 0 1 1149952 1 1891098 0 species Brucella sp. 2002734562 67 165 Brucella sp. 141012304 0 species 1885919 1 1844051 1 species 0 Brucella sp. 09RB8910 193 Brucella ovis species 0 236 1 75 40 3723 Ochrobactrum genus 0 1 528 5 1 419475 species 0 Ochrobactrum pseudogrignonense 957 271865 1 Ochrobactrum sp. A44 0 species 722 Ochrobactrum anthropi species 0 1 529 1032 571256 1 Ochrobactrum pituitosum 0 species 972 0 1 family Rhizobiaceae 82115 52 709 63864 43799 0 no rank 33 227290 7 357 Agrobacterium 0 1 genus 10503 193 no rank 0 2 2632611 2072 Agrobacterium sp. H13-3 species 0 1 861208 1001 1 1842536 species 0 Agrobacterium sp. RAC06 1071 1499 1 359 Agrobacterium rhizogenes species 0 1024 1 373 species 0 Agrobacterium vitis 5715 0 species group 1183400 2 1092 species 0 Agrobacterium fabrum 1176649 1 0 species Agrobacterium tumefaciens 1 358 4623 25 2305 genus 0 1 Neorhizobium 2 1525371 0 species Neorhizobium galegae 1 399 2280 30991 1941 24 379 genus 1 0 Rhizobium 3484 0 species Rhizobium etli 1 29449 1 384 Rhizobium leguminosarum species 0 7545 13177 0 no rank 18 2613769 species 0 Rhizobium sp. NXC14 1981173 1 746 1 2020311 species 0 Rhizobium sp. Kim5 880 0 species Rhizobium sp. N324 1703969 1 1125 1 1 1703967 Rhizobium sp. N741 0 species 1 2028343 Rhizobium sp. 10195 0 species 1325 Rhizobium sp. N1314 0 species 1 1703961 151 1110 1 1869170 0 species Rhizobium sp. S41 897 1 1301032 Rhizobium sp. IE4771 species 0 1 1703960 species 0 Rhizobium sp. N113 9 Rhizobium sp. IRBG74 0 species 1 424182 1049 9 Rhizobium sp. N1341 species 0 1703962 1 0 species Rhizobium sp. NXC24 1 2048897 1030 species 0 Rhizobium sp. ACO-34A 1571470 1 1523 151 1703966 1 Rhizobium sp. N731 0 species species 0 Rhizobium sp. Y9 1 1914541 1113 species 0 Rhizobium sp. TAL182 1 2020313 199 Rhizobium sp. CIAT894 0 species 1 2020312 909 950 1 1125847 species 0 Rhizobium sp. NT-26 Rhizobium tropici 0 species 398 1 958 2114 1 396 0 species Rhizobium phaseoli 1772 Rhizobium gallicum species 0 1 56730 23 2032 genus 0 1 Shinella 2 323620 1 2643062 0 no rank 2009 2009 Shinella sp. HZN7 species 0 879274 1 22 3423 Liberibacter genus 0 1 34019 6 309868 1 Candidatus Liberibacter americanus species 0 978 205 34021 1 0 species Candidatus Liberibacter asiaticus 397 1 34020 0 species Candidatus Liberibacter africanus 851 0 species Liberibacter crescens 1273132 1 970 556287 1 Candidatus Liberibacter solanacearum 0 species 10 227292 0 no rank 13901 21 2490 genus 1 0 Ensifer 106591 3 1282 106592 1 Ensifer adhaerens species 0 1187 0 species Ensifer sojae 1 716925 28105 7 Sinorhizobium genus 0 1 11411 292 2612 0 no rank 2613772 2 1675 species 0 Sinorhizobium sp. RAC02 1 1842534 937 794846 1 species 0 Sinorhizobium sp. CCBAU 05631 1 194963 Sinorhizobium americanum 0 species 1592 1101 species 0 Sinorhizobium medicae 110321 1 Sinorhizobium meliloti species 0 1 382 2880 2934 0 species group 663276 1 2934 Sinorhizobium fredii species 0 1 380 2969 19 2036754 4 Chelatococcaceae family 0 1 1 0 genus Chelatococcus 3 28209 99 2950 1 444444 0 species Chelatococcus daeguensis 1155 1696 0 no rank 2638111 1 1696 1702325 1 0 species Chelatococcus sp. CO-6 31993 6 Methylocystaceae family 0 1 3069 20 1858 33 3 133 genus 1 0 Methylocystis 902 2625913 1 no rank 0 187303 1 Methylocystis sp. SC2 0 species 902 923 1 655015 Methylocystis bryophila species 0 1191 8 2 425 genus 1 0 Methylosinus Methylosinus trichosporium 0 species 1 426 1183 2 119043 family 0 909 2 256616 1 0 genus Parvibaculum 909 28 881 1 256618 0 species Parvibaculum lavamentivorans 0 1 order Pelagibacterales 54526 8 13 9576 1655514 6 0 1 family Pelagibacteraceae 7027 13 Candidatus Pelagibacter 1 0 genus 3 198251 13 3161 1935 1 198252 Candidatus Pelagibacter ubique 0 species 2647897 1 0 no rank 1213 1 1002672 0 species Candidatus Pelagibacter sp. IMCC9063 1213 0 no rank 1655516 2 3853 1292 1 744985 alpha proteobacterium HIMB59 0 species 2561 species 0 alpha proteobacterium HIMB5 1 859653 genus 0 1 2045213 2536 2536 Candidatus Fonsibacter ubiquis 0 species 1925548 1 40620 85 54 766 0 1 order Rickettsiales 105 17432 Anaplasmataceae family 0 1 23 942 33993 4 1 0 genus Neorickettsia 643 3 species 0 Neorickettsia risticii 1 950 187 951 1 species 0 Neorickettsia sennetsu 148 305 1 33994 species 0 Neorickettsia helminthoeca Anaplasma genus 0 1 4 768 2 542 90 770 1 Anaplasma marginale species 0 species 0 Anaplasma centrale 769 1 198 106179 1 0 species group 252 1 948 Anaplasma phagocytophilum 0 species 252 tribe 0 952 8 5586 49 5586 0 1 genus Wolbachia 8 953 0 no rank 2640676 7 5537 77038 1 species 0 Wolbachia endosymbiont of Drosophila simulans 1438 Wolbachia endosymbiont of Cimex lectularius 0 species 246273 1 567 Wolbachia sp. wRi 0 species 66084 1 504 640 0 species Wolbachia endosymbiont of Onchocerca ochengi 100901 1 624 77551 1 species 0 Wolbachia endosymbiont of Onchocerca volvulus 1164 species 0 Wolbachia endosymbiont of Brugia malayi 1 80849 163164 1 Wolbachia endosymbiont of Drosophila melanogaster species 0 600 943 6 genus 1 0 Ehrlichia 10556 71 9114 106178 4 0 species group 779 1 species 0 Ehrlichia ruminantium 2836 0 species Ehrlichia muris 1 35795 1883 2643 1 945 Ehrlichia chaffeensis species 0 species 0 Ehrlichia canis 944 1 1752 106181 1 0 no rank 1371 1371 Ehrlichia sp. HF 0 species 1 391036 Rickettsiaceae family 1 0 775 27 14 18310 2115980 1 genus 0 2251 0 species Candidatus Phycorickettsia trachydisci 2115978 1 2251 16045 25 33988 tribe 0 774 14033 1 0 genus Rickettsia 780 23 6483 17 114277 species group 0 0 species Rickettsia rickettsii 1 783 322 Rickettsia monacensis 0 species 1 109232 824 334 0 species Rickettsia peacockii 47589 1 243 226665 1 Rickettsia heilongjiangensis 0 species 51 species 0 Rickettsia slovaca 35794 1 42862 1 Rickettsia felis 0 species 945 55 1 35788 Rickettsia africae species 0 36 species 0 Rickettsia conorii 781 1 species 0 Rickettsia akari 786 1 998 565 Rickettsia amblyommatis 0 species 33989 1 844 Rickettsia australis species 0 787 1 Rickettsia japonica 0 species 35790 1 260 35791 1 Rickettsia massiliae species 0 307 1 33991 Rickettsia montanensis 0 species 220 0 species Rickettsia rhipicephali 1 33992 259 35792 1 species 0 Rickettsia parkeri 29 191 1105106 1 species 0 Rickettsia philipii 2841 species group 0 2 114292 1129 Rickettsia typhi 0 species 785 1 1712 Rickettsia prowazekii species 0 782 1 2793 species group 0 1129742 2 33990 1 species 0 Rickettsia bellii 2003 Rickettsia canadensis 0 species 788 1 790 1 114295 no rank 0 1142 0 species Rickettsia endosymbiont of Bemisia tabaci 1 337479 1142 13 2012 genus 1 0 Orientia 69474 2 1 784 0 species Orientia tsutsugamushi 1999 3359 1 1699067 0 no rank 3359 1 1528098 Rickettsiales bacterium Ac37b species 0 2 1328881 Candidatus Midichloriaceae family 0 1 1434 1 genus 0 1 411566 1433 1433 Candidatus Midichloria mitochondrii 0 species 1 234827 2783 0 order 5 2800060 family 1 0 Hyphomonadaceae 5 69657 30 2783 1309 genus 0 1 2723 1309 0 species Hirschia baltica 1 2724 Hyphomonas 0 1 genus 3 85 15 1444 875 Hyphomonas neptunium 0 species 81032 1 1 2630699 0 no rank 554 554 1906738 1 0 species Hyphomonas sp. Mor2 4346 8 82117 0 no rank Micavibrio genus 0 1 2 213485 15 1054 Micavibrio aeruginosavorus 0 species 1 349221 1039 Phreatobacter 0 1 genus 2 1632780 41 1505 1464 Phreatobacter sp. S-12 species 0 1868589 1 clade 0 62654 2 555 2 767891 Candidatus Puniceispirillum genus 0 1 555 7 species 0 Candidatus Puniceispirillum marinum 767892 1 548 1232 20 991903 2 Polymorphum genus 0 1 1212 1 991904 0 species Polymorphum gilvum 62771 660 204441 66 Rhodospirillales 0 1 order 569 37178 family 1 0 Rhodospirillaceae 41295 30 7578 199 5 13134 0 1 genus Magnetospirillum 2617991 2 no rank 0 3441 1694 Magnetospirillum sp. XM-1 0 species 1663591 1 Magnetospirillum sp. ME-1 species 0 1 1639348 1747 1883 1 55518 Magnetospirillum gryphiswaldense 0 species 2055 84159 1 species 0 Magnetospirillum magneticum 2 1612157 genus 0 1 Pararhodospirillum 1120 8 1112 1084 1 0 species Pararhodospirillum photometricum 0 1 genus Tistrella 171436 2 18 2186 2168 171437 1 0 species Tistrella mobilis 5 191 genus 0 1 Azospirillum 13196 220 1 193 Azospirillum lipoferum species 0 4748 1 192 species 0 Azospirillum brasilense 4239 Azospirillum thiophilum species 0 528244 1 2806 1183 Azospirillum humicireducens 0 species 1 1226968 457 5 1804663 2 0 1 genus Haematospirillum Haematospirillum jordaniae 0 species 1 1549855 452 168934 3 Thalassospira genus 1 0 2309 13 1006 species 0 Thalassospira xiamenensis 1 220697 2048283 1 species 0 Thalassospira sp. CSC3H3 1290 2169 9 2 1543704 1 0 genus Niveispirillum 1 1612173 Niveispirillum cyanobacteriorum species 0 2160 825 7 2 1182780 Magnetospira 1 0 genus 818 2685734 1 0 no rank 818 1288970 1 species 0 Magnetospira sp. QH-2 3685 65 3 1081 Rhodospirillum genus 0 1 2103 Rhodospirillum centenum species 0 34018 1 Rhodospirillum rubrum 0 species 1 1085 1517 1 1263978 genus 0 660 1263979 1 Candidatus Endolissoclinum faulkneri 0 species 660 Nitrospirillum genus 0 1 1543705 2 39 2424 2385 1 28077 Nitrospirillum amazonense species 0 372 24933 0 1 family Acetobacteraceae 35 433 10 656 0 1 genus Kozakia 2 153497 species 0 Kozakia baliensis 153496 1 646 2 1602345 genus 0 1 Parasaccharibacter 546 2 0 species Parasaccharibacter apium 1510841 1 544 12 649 Neoasaia genus 0 1 2 320496 637 320497 1 species 0 Neoasaia chiangmaiensis 125216 3 Roseomonas genus 1 0 4051 72 2617492 1 no rank 0 2106 2106 2018065 1 Roseomonas sp. FDAARGOS_362 species 0 1873 257708 1 Roseomonas gilardii species 0 5766 72 434 8 0 1 genus Acetobacter species 0 Acetobacter tropicalis 1 104102 762 636 1 151157 subgenus 0 Acetobacter aceti 0 species 1 435 636 Acetobacter pomorum species 0 65959 1 290 478 species 0 Acetobacter oryzifermentans 1633874 1 753 Acetobacter persici 0 species 1 1076596 438 1 0 species Acetobacter pasteurianus 1968 807 Acetobacter senegalensis species 0 1 446692 Asaia genus 0 1 2 91914 7 676 669 1 91915 0 species Asaia bogorensis 132 2404 genus 0 1 Acidiphilium 522 3 1140 species 0 Acidiphilium cryptum 524 1 1132 1 62140 Acidiphilium multivorum species 0 2 364409 Granulibacter 1 0 genus 2164 26 364410 1 0 species Granulibacter bethesdensis 2138 89583 2 Gluconacetobacter genus 1 0 1205 17 1188 1 33996 species 0 Gluconacetobacter diazotrophicus 80 4258 genus 0 1 Komagataeibacter 5 1434011 1 1177712 Komagataeibacter medellinensis species 0 787 1744 28448 1 Komagataeibacter xylinus species 0 1013 265960 1 Komagataeibacter nataicola species 0 0 species Komagataeibacter europaeus 33995 1 634 441 3 genus 1 0 Gluconobacter 2186 38 1524 species 0 Gluconobacter oxydans 442 1 1 318683 Gluconobacter albidus 0 species 624 1055 4 1191478 4 order 1 0 Magnetococcales Magnetococcaceae 0 1 family 1191479 3 4 1051 Magnetococcus 1 0 genus 2 162171 1 1047 Magnetococcus marinus 0 species 1 1124597 1046 19200 273 204458 20 1 0 order Caulobacterales 199 18927 Caulobacteraceae 1 0 family 19 76892 1530 22 2 20 Phenylobacterium genus 0 1 0 species Phenylobacterium zucineum 1 284016 1508 0 no rank 81440 1 637 637 0 species Caulobacteraceae bacterium OTSz_A_272 1759059 1 8860 166 6 75 genus 1 0 Caulobacter 1 2648921 0 no rank 1973 1973 366602 1 0 species Caulobacter sp. K31 2565 1 155892 0 species Caulobacter vibrioides Caulobacter mirabilis 0 species 1 69666 1755 Caulobacter segnis 0 species 1 88688 1383 1018 1 69395 species 0 Caulobacter henricii 221 6620 Brevundimonas genus 1 0 7 41275 3 2622653 no rank 0 3055 948 0 species Brevundimonas sp. GW460-12-10-14-LB2 1827469 1 1105 1 1938605 0 species Brevundimonas sp. LM2 Brevundimonas sp. DS20 species 0 1532555 1 1002 1064 Brevundimonas subvibrioides species 0 1 74313 1296 1 588932 0 species Brevundimonas naejangsanensis 1 41276 0 species Brevundimonas vesicularis 984 Asticcacaulis genus 0 1 2 76890 14 1081 Asticcacaulis excentricus 0 species 1 78587 1067 0 1 order Sphingomonadales 82 204457 463 69083 59 41297 family 0 1 Sphingomonadaceae 53265 918 915 11 2 150203 0 1 genus Blastomonas 904 0 no rank 1 2626550 0 species Blastomonas sp. RAC04 1842535 1 904 13 1739 1 0 genus Zymomonas 541 2 1 542 species 0 Zymomonas mobilis 1726 Citromicrobium genus 1 0 72173 2 16 1134 2630544 1 no rank 0 1118 1118 Citromicrobium sp. JL477 0 species 1 1634516 1 2709685 0 genus 515 515 Sphingorhabdus flavimaris 0 species 1 266812 genus 0 2685927 1 776 776 1 1921510 Sphingomonas sp. JJ-A5 0 species Sphingopyxis 0 1 genus 10 165697 217 9041 1195 1 267128 0 species Sphingopyxis granuli 887 1 117207 Sphingopyxis alaskensis 0 species 759 1 33052 species 0 Sphingopyxis terrae 1703 0 species Sphingopyxis macrogoltabida 1 33050 946 species 0 Sphingopyxis fribergensis 1515612 1 3334 0 no rank 2614943 4 Sphingopyxis sp. QXT-31 species 0 1357916 1 972 1104 1 1866325 Sphingopyxis sp. MG species 0 Sphingopyxis sp. 113P3 species 0 1 292913 758 1 1913578 0 species Sphingopyxis sp. LPB0140 500 5 165696 Novosphingobium 0 1 genus 5268 81 species 0 Novosphingobium pentaromativorans 1 205844 1172 1592 1 158500 Novosphingobium resinovorum species 0 48935 1 Novosphingobium aromaticivorans 0 species 1105 1318 no rank 0 2644732 1 Novosphingobium sp. PP1Y 0 species 702113 1 1318 genus 1 0 Sphingorhabdus 1434046 3 13 1283 1270 0 no rank 2 2614947 Sphingorhabdus sp. YGSMI21 species 0 1 2077182 805 0 species Sphingorhabdus sp. M41 1806885 1 465 Sphingobium genus 1 0 165695 15 309 14274 0 no rank 6 2611147 5971 1054 1843368 1 0 species Sphingobium sp. RAC03 655 0 species Sphingobium sp. EP60837 1855519 1 1224 0 species Sphingobium sp. TKS 1 1315974 1 484429 Sphingobium sp. YBL2 0 species 1155 1127 species 0 Sphingobium sp. SYK-6 1 627192 407020 1 species 0 Sphingobium sp. MI1205 756 1224 1 332055 0 species Sphingobium indicum 710 1 76947 0 species Sphingobium herbicidovorans 13690 1 Sphingobium yanoikuyae species 0 1087 species 0 Sphingobium japonicum 1 332056 881 798 1332080 1 Sphingobium baderi species 0 923 species 0 Sphingobium hydrophobicum 1673076 1 1075 Sphingobium cloacae 0 species 120107 1 1 46429 Sphingobium chlorophenolicum 0 species 1296 15 13687 1 0 genus Sphingomonas 16217 326 6228 196159 6 0 no rank 1013 species 0 Sphingomonas sp. Cra20 1327635 1 Sphingomonas sp. LK11 0 species 1 1390395 1129 1065 1 1938607 0 species Sphingomonas sp. LM7 1072 species 0 Sphingomonas sp. NIC1 1 1961362 Sphingomonas sp. MM-1 species 0 1 745310 1225 0 species Sphingomonas sp. KC8 1 1030157 724 1609977 1 0 species Sphingomonas hengshuiensis 1058 1082 1 93064 species 0 Sphingomonas koreensis 1144 species 0 Sphingomonas taxi 1 1549858 1123 species 0 Sphingomonas melonis 152682 1 1375 0 species Sphingomonas sanxanigenens 397260 1 species 0 Sphingomonas panacis 1560345 1 883 Sphingomonas wittichii 0 1 species 2 160791 1470 2998 1283312 1 Sphingomonas sp. DC-6 strain 0 1528 6 1185 Rhizorhabdus genus 0 1 1649486 2 1179 1 1850238 Rhizorhabdus dicambivorans species 0 15355 232 22 335929 family 1 0 Erythrobacteraceae 143 2394 genus 0 1 Croceicoccus 1295327 3 1 1348774 Croceicoccus naphthovorans species 0 875 0 species Croceicoccus marinus 450378 1 1376 genus 0 2 2800686 1214 645 0 species Altererythrobacter mangrovi 1982042 1 569 0 species Altererythrobacter dongtanensis 692370 1 2 1855416 genus 0 1437 1 192812 species 0 Erythrobacter flavus 781 656 Erythrobacter seohaensis species 0 266951 1 194 2311 0 1 genus Altererythrobacter 4 361177 476157 1 Altererythrobacter ishigakiensis 0 species 440 0 species Altererythrobacter atlanticus 1267766 1 885 1 361183 Altererythrobacter epoxidivorans 0 species 792 6 2800788 0 no rank 4615 121 2227 Porphyrobacter genus 0 1 1111 3 no rank 0 2 2683265 2106 1 2023229 Porphyrobacter HT-58-2 0 species 1095 1896196 1 Porphyrobacter sp. LM 6 species 0 1011 Erythrobacter genus 0 1 3 1041 292 2388 1231 39960 1 Erythrobacter litoralis species 0 1 1112 species 0 Porphyrobacter neustonensis 865 1 2800685 0 genus 671 species 0 Altererythrobacter marensis 543877 1 671 genus 0 1 2800682 915 0 species Altererythrobacter namhicola 1 645517 915 1566 genus 0 2 2800681 1015 1 502682 Erythrobacter gangjinensis species 0 551 Erythrobacter atlanticus species 0 1 1648404 2 2800059 order 0 840 840 family 0 2800061 2 15 840 0 1 genus Maricaulis 2 74317 74318 1 Maricaulis maris 0 species 825 1921002 5 Holosporales 1 0 order 2872 8 44746 1 family 0 1662 1662 0 no rank 204454 1 1662 1 86106 endosymbiont of Acanthamoeba sp. UWC8 species 0 family 0 1 1777752 361 0 genus 1521255 1 361 361 91604 1 Candidatus Paracaedibacter acanthamoebae species 0 1 841 1 0 family Caedimonadaceae 2100208 2 840 1 1509243 0 genus 840 Candidatus Nucleicultrix amoebiphila 0 species 1 1509244 4 513 0 1 order Parvularculales 255473 4 8 509 Parvularculaceae 1 0 family 3 255474 26 501 Parvularcula genus 1 0 208215 2 475 1 208216 species 0 Parvularcula bermudensis 73150 410 92 204455 order 0 1 Rhodobacterales 31989 91 Rhodobacteraceae 0 1 family 72740 1420 0 1 genus Phaeobacter 5 302485 106 6514 577 0 species Phaeobacter porticola 1 1844006 2278 221822 1 0 species Phaeobacter inhibens 0 species Phaeobacter piscinae 1 1580596 1719 1834 Phaeobacter gallaeciensis species 0 60890 1 1052 4 74032 2 Antarctobacter 1 0 genus Antarctobacter heliothermus 0 species 1 74033 1048 Sagittula genus 1 0 2 58842 9 1633 1624 1 2624628 no rank 0 Sagittula sp. P11 0 species 2009329 1 1624 798 0 genus 1 1649279 798 1 379347 0 species Ruegeria mobilis 1070 9 1609958 2 genus 0 1 Confluentimicrobium 1061 1 2643318 0 no rank 0 species Confluentimicrobium sp. EMB200-NS6 1609966 1 1061 13 1 436357 Thalassococcus 0 genus 10 1588 0 1 genus Defluviimonas 1097466 2 1578 species 0 Defluviimonas alba 1 1335048 1431 0 no rank 2 58840 1 2033435 Rhodobacteraceae bacterium QY30 species 0 950 species 0 Rhodobacteraceae bacterium 1 1904441 481 2 74030 0 1 genus Roseovarius 687 18 1 215743 species 0 Roseovarius mucosus 669 839 genus 0 2211641 1 Loktanella vestfoldensis species 0 245188 1 839 1060 5 Rhodobacter 1 0 genus 6560 171 1138 1061 1 0 species Rhodobacter capsulatus 0 species Rhodobacter sphaeroides 1063 1 3267 1984 no rank 0 196779 2 0 species Rhodobacter sp. CZR27 2033869 1 1023 961 species 0 Rhodobacter sp. LPB0142 1850250 1 560 1 119541 genus 0 560 Rhodobaca barguzinensis species 0 441209 1 Halocynthiibacter 0 1 genus 1579315 2 16 430 414 1579316 1 0 species Halocynthiibacter arcticus 97050 3 1 0 genus Ruegeria 2115 6 896 2625375 1 no rank 0 896 Ruegeria sp. TM1040 0 species 292414 1 1 89184 Ruegeria pomeroyi 0 species 1213 1221 2 4 53945 1 0 genus Octadecabacter 1 1217908 Octadecabacter antarcticus species 0 429 0 species Octadecabacter arcticus 53946 1 488 Octadecabacter temperatus 0 species 1 1458307 302 5 944 Tateyamaria 0 1 genus 299261 2 1 299262 Tateyamaria omphalii species 0 939 227873 2 genus 1 0 Pannonibacter 2149 39 2110 Pannonibacter phragmitetus species 0 1 121719 1 309512 genus 0 1450 1450 0 species Dinoroseobacter shibae 215813 1 4035 29 875170 5 1 0 genus Celeribacter 388 1397108 1 species 0 Celeribacter marinus species 0 Celeribacter indicus 1 1208324 1405 1 1758178 Celeribacter ethanolicus species 0 1024 Celeribacter manganoxidans species 0 1411902 1 1189 18 2108 Sulfitobacter genus 0 1 3 60136 1068 1 196795 no rank 0 1 1917485 Sulfitobacter sp. AM1-D1 species 0 1068 1 1402135 species 0 Sulfitobacter pseudonitzschiae 1022 4 Loktanella genus 0 245186 1 0 1 genus Marinovum 367771 2 8 1539 1 42444 Marinovum algicola species 0 1531 1985 24 3 92944 genus 1 0 Ketogulonicigenium 92947 1 species 0 Ketogulonicigenium robustum 915 species 0 Ketogulonicigenium vulgare 92945 1 1046 5 1453 0 1 genus Leisingera 2 191028 Leisingera methylohalidivorans 0 species 133924 1 1448 1 0 genus Pelagibaca 2 360528 2 1432 1430 0 species Pelagibaca abyssi 1250539 1 2 1284657 Planktomarina 1 0 genus 465 3 462 0 species Planktomarina temperata 1 1284658 3671 85 478070 4 1 0 genus Labrenzia 2648686 2 no rank 0 2258 1674922 1 Labrenzia sp. CP4 0 species 1311 Labrenzia sp. VG12 species 0 2021862 1 947 187304 1 species 0 Labrenzia aggregata 1328 Jannaschia 1 0 genus 2 188905 15 899 2645469 1 0 no rank 884 884 1 290400 0 species Jannaschia sp. CCS1 2433 3 genus 0 1 Roseobacter 1128 43 453 1 2434 species 0 Roseobacter denitrificans Roseobacter litoralis 0 species 1 42443 632 10 533 Marivivens 1 0 genus 1759396 2 1 2622455 no rank 0 523 523 species 0 Marivivens sp. JLT3646 1920883 1 Thioclava genus 0 1 285107 2 4 824 Thioclava nitratireducens species 0 1 1915078 820 159345 2 Roseibacterium 0 1 genus 711 1 710 0 species Roseibacterium elongatum 159346 1 4445 86 34008 4 1 0 genus Rhodovulum 2039 35806 1 Rhodovulum sulfidophilum 0 species 2320 2631432 2 0 no rank Rhodovulum sp. P5 species 0 1 1564506 1252 1068 species 0 Rhodovulum sp. MB263 1 308754 3616 0 genus 263377 2 1946 0 no rank 1 2640570 1946 Yangia sp. CCB-MM3 0 species 1792508 1 1670 1 1229727 0 species Thiobacimonas profunda 181 11418 genus 0 1 Paracoccus 265 9 1390 Paracoccus zhejiangensis 0 species 1 1077935 1218 Paracoccus contaminans species 0 1 1945662 1115 species 0 Paracoccus aminophilus 34003 1 1410 1 34004 Paracoccus aminovorans species 0 2233 0 species Paracoccus yeei 147645 1 1834 Paracoccus denitrificans species 0 1 266 1290 Paracoccus sp. CBA4604 species 0 2065379 1 0 no rank 1 246570 747 Paracoccus sp. BM15 0 species 1529068 1 747 342775 200 68525 0 subphylum class 0 1 Epsilonproteobacteria 29547 71 249 149335 Nautiliales order 0 1 235899 5 1 3023 2 224467 family 0 2480 2 191291 Nautilia genus 0 1 2480 17 0 species Nautilia profundicola 1 244787 2463 542 2 2795691 0 family 2 269258 1 0 genus Nitratiruptor 542 2 540 2624044 1 no rank 0 540 Nitratiruptor sp. SB155-2 species 0 1 387092 1777 146063 Campylobacterales 1 0 order 213849 65 12720 33 14 72293 family 1 0 Helicobacteraceae 12332 63 12 209 0 1 genus Helicobacter 1 1591088 species 0 Helicobacter himalayensis 417 586 1 217 0 species Helicobacter mustelae 912 Helicobacter cinaedi 0 species 1 213 76936 1 Helicobacter typhlonius species 0 446 Helicobacter pylori 0 species 210 1 5613 449 Helicobacter felis species 0 214 1 212 1 Helicobacter acinonychis species 0 247 1081 species 0 Helicobacter hepaticus 1 32025 Helicobacter bilis species 0 37372 1 893 249 no rank 0 2593540 1 249 species 0 Helicobacter sp. MIT 01-6242 1 222136 0 species Helicobacter cetorum 1 138563 1376 355 843 1 genus 0 Wolinella succinogenes 0 species 1 844 355 2308 5 2771472 family 0 3 265570 Sulfurovum 1 0 genus 1451 14 757 no rank 0 2646778 1 757 1 387093 Sulfurovum sp. NBC37-1 species 0 680 0 species Sulfurovum lithotrophicum 206403 1 2 269260 genus 0 1 Nitratifractor 857 5 852 1 269261 Nitratifractor salsuginis 0 species 126227 4609 41 72294 Campylobacteraceae 1 0 family 87494 800 26 194 Campylobacter genus 1 0 1384 28898 1 Campylobacter helveticus species 0 2593542 4 no rank 0 6205 1023 species 0 Campylobacter sp. RM12175 1660076 1 1329 1 1660073 Campylobacter sp. RM6137 0 species 1411 1 1660074 species 0 Campylobacter sp. RM8964 2442 1 1500960 0 species Campylobacter sp. RM16704 4122 1965231 1 Campylobacter pinnipediorum species 0 Campylobacter curvus species 0 200 1 931 3930 Campylobacter fetus species 0 196 1 Campylobacter iguaniorum 0 species 1 1244531 1700 1319 1 522485 0 species Campylobacter avium Campylobacter lanienae species 0 75658 1 1185 6636 1 201 species 0 Campylobacter lari 2157 1 1031542 Campylobacter volucris 0 species 1483 199 1 0 species Campylobacter concisus 1 76517 Campylobacter hominis 0 species 1774 852 824 1 species 0 Campylobacter gracilis 2166 0 species Campylobacter hyointestinalis 1 198 species 0 Campylobacter sputorum 206 1 5200 Campylobacter insulaenigrae 0 species 1 260714 1376 species 0 Campylobacter jejuni 1 197 13398 2665 0 species Campylobacter peloridis 1 488546 21456 Campylobacter coli 0 species 195 1 2415 Campylobacter subantarcticus species 0 497724 1 1 374106 species 0 Campylobacter cuniculorum 1259 3081 species 0 Campylobacter ureolyticus 827 1 26674 2321108 5 0 no rank 28196 3 Arcobacter 0 1 genus 14922 100 1 28197 species 0 Arcobacter butzleri 8388 6434 28199 1 Arcobacter nitrofigilis species 0 2321187 1 genus 0 5752 Arcobacter sp. LPB0137 species 0 1850254 1 5752 6000 0 no rank 2321207 1 1 944547 Arcobacter sp. L 0 species 6000 7450 55 57665 9 Sulfurospirillum genus 1 0 no rank 0 2618290 3 3239 0 species Sulfurospirillum sp. UCH001 1581011 1 1414 908 1 1986224 Sulfurospirillum sp. SL2-1 0 species 220622 1 species 0 Sulfurospirillum sp. JPD-1 917 1 44674 Sulfurospirillum barnesii species 0 1290 Sulfurospirillum multivorans species 0 66821 1 874 194424 1 Sulfurospirillum halorespirans 0 species 751 815 Sulfurospirillum deleyianum 0 species 65553 1 426 1 366522 0 species Sulfurospirillum cavolei 3031 family 0 2771471 4 202746 3 genus 0 1 Sulfurimonas 2578 12 0 species Sulfurimonas denitrificans 1 39766 1498 1 202747 Sulfurimonas autotrophica 0 species 1068 0 genus 286130 1 453 0 species Sulfuricurvum kujiense 148813 1 453 466 193440 Deltaproteobacteria 1 0 class 28221 129 22 2966 order 1 0 Desulfarculales 4 453227 Desulfarculaceae 1 0 family 453228 3 34 2944 2910 25 453229 2 Desulfarculus genus 0 1 1 453230 0 species Desulfarculus baarsii 2885 401 31917 1 0 order Desulfuromonadales 69541 24 Geobacteraceae 0 1 family 14 213422 213 20715 392332 2 Geoalkalibacter 0 1 genus 1791 13 1 483547 Geoalkalibacter subterraneus species 0 1778 Geobacter genus 1 0 11 28231 375 18711 1454 Geobacter lovleyi species 0 313985 1 1755 1 351604 Geobacter uraniireducens species 0 0 species Geobacter metallireducens 28232 1 1705 Geobacter bemidjiensis 0 species 225194 1 2338 1291 Geobacter daltonii species 0 1203471 1 1 345632 Geobacter pickeringii 0 species 1418 1895 species 0 Geobacter anodireducens 1 1340425 1579 0 species Geobacter sulfurreducens 35554 1 2627627 2 no rank 0 4901 2179 0 species Geobacter sp. M21 1 443144 2722 443143 1 Geobacter sp. M18 species 0 10801 145 9 213421 0 1 family Desulfuromonadaceae 1 0 genus Desulfuromonas 3 890 30 4149 no rank 0 1 2614637 2183 Desulfuromonas sp. DDH964 0 species 1823759 1 2183 Desulfuromonas soudanensis 0 species 1 1603606 1936 5 18 genus 1 0 Pelobacter 6507 33 1184 2620299 1 0 no rank 1184 species 0 Pelobacter sp. SFB93 1 1842532 Pelobacter carbinolicus species 0 19 1 1493 1 29542 Pelobacter acetylenicus 0 species 1553 1 29543 Pelobacter propionicus species 0 2244 411 79673 1 0 order Desulfovibrionales 213115 26 6 965 1 0 family Desulfohalobiaceae 213117 3 45662 2 genus 0 1 Desulfohalobium 959 8 0 species Desulfohalobium retbaense 45663 1 951 18 194924 0 1 family Desulfovibrionaceae 70059 301 1364 0 genus 1 2794998 1364 880 1 0 species Desulfovibrio salexigens 41707 2 Lawsonia genus 0 1 3344 3 3341 Lawsonia intracellularis 0 species 1 29546 872 9 genus 1 0 Desulfovibrio 55199 347 3252 species 0 Desulfovibrio magneticus 184917 1 881 1 species 0 Desulfovibrio vulgaris 8422 species 0 Candidatus Desulfovibrio trichonymphae 1725232 1 1704 0 species Desulfovibrio alaskensis 58180 1 2538 8408 2593640 1 0 no rank 631220 1 species 0 Desulfovibrio sp. G11 8408 9421 901 1 Desulfovibrio piger 0 species 0 species Desulfovibrio desulfuricans 1 876 9690 44742 1 0 species Desulfovibrio fairfieldensis 11417 genus 1 0 Pseudodesulfovibrio 4 2035811 41 7566 182210 1 0 species Pseudodesulfovibrio aespoeensis 2659 Pseudodesulfovibrio profundus species 0 1 57320 1411 species 0 Pseudodesulfovibrio indicus 1716143 1 3455 2285 1 2582840 0 genus Desulfovibrio africanus species 0 873 1 2285 8238 76 213116 4 Desulfomicrobiaceae family 1 0 44 8162 Desulfomicrobium 1 0 genus 898 3 899 1 Desulfomicrobium baculatum 0 species 3673 species 0 Desulfomicrobium orale 1 132132 4445 53578 701 38 29 order 0 1 Myxococcales 10583 suborder 0 80812 8 3 1055686 Sandaracinaceae 0 1 family 2184 25 2159 8 2 1055688 Sandaracinus 1 0 genus 2151 species 0 Sandaracinus amylolyticus 1 927083 50 8399 family 1 0 Polyangiaceae 5 49 1656 12 2 50 1 0 genus Chondromyces 1644 species 0 Chondromyces crocatus 1 52 2 39643 genus 1 0 Sorangium 6693 56 Sorangium cellulosum 0 species 56 1 6637 39437 0 suborder 26 80811 0 1 family Archangiaceae 39 9 232 10836 2193 13 40 2 1 0 genus Stigmatella 2180 41 1 0 species Stigmatella aurantiaca 1 0 genus Melittangium 44 2 7 2551 2544 0 species Melittangium boletus 1 83453 3106 17 2 47 Archangium 0 1 genus 48 1 0 species Archangium gephyra 3089 42 2 1 0 genus Cystobacter 2754 14 0 species Cystobacter fuscus 1 43 2740 Vulgatibacteraceae 0 1 family 1524213 3 14 1624 Vulgatibacter 0 1 genus 2 1524214 45 1610 1565 Vulgatibacter incomptus 0 species 1 1391653 31 9 family 1 0 Myxococcaceae 18071 127 83461 3 Corallococcus 0 1 genus 5834 121 3085 184914 1 Corallococcus coralloides 0 species 2628 species 0 Myxococcus macrosporus 1 35 5 32 genus 0 1 Myxococcus 12110 495 83455 1 Myxococcus stipitatus species 0 2358 2083 1 34 Myxococcus xanthus 0 species 4984 1 33 species 0 Myxococcus fulvus 2190 1 1297742 Myxococcus hansupus 0 species 1524215 5 Anaeromyxobacteraceae 0 1 family 8906 105 genus 1 0 Anaeromyxobacter 161492 4 248 8801 3923 161493 1 0 species Anaeromyxobacter dehalogenans 4630 0 no rank 2620896 2 2170 404589 1 Anaeromyxobacter sp. Fw109-5 0 species 2460 447217 1 Anaeromyxobacter sp. K species 0 2857 suborder 0 3 224462 41 2857 Kofleriaceae family 1 0 224464 3 2816 22 162027 2 1 0 genus Haliangium 2794 80816 1 Haliangium ochraceum 0 species 0 1 order Syntrophobacterales 213462 11 22 4512 3 213465 family 0 1 Syntrophobacteraceae 1700 16 1 0 genus Syntrophobacter 29526 2 22 1684 0 species Syntrophobacter fumaroxidans 1 119484 1662 16 2790 Syntrophaceae family 0 1 7 213468 2 43773 Syntrophus genus 0 1 1145 7 1138 species 0 Syntrophus aciditrophicus 1 316277 1 810 Desulfobacca genus 0 1 60892 2 809 1 60893 0 species Desulfobacca acetoxidans 2 2357 Desulfomonile 1 0 genus 819 2 817 0 species Desulfomonile tiedjei 2358 1 213118 19 1 0 order Desulfobacterales 16309 98 Desulfobacteraceae family 1 0 9 213119 38 10338 907 0 genus 2295 1 907 2296 1 species 0 Desulfobacterium autotrophicum 17 5730 genus 1 0 Desulfococcus 896 3 2507 1 181663 0 species Desulfococcus oleovorans 3206 Desulfococcus multivorans 0 species 897 1 Desulfobacula 0 1 genus 28222 2 21 1910 28223 1 species 0 Desulfobacula toluolica 1889 1 0 genus Desulfatibacillum 218207 2 4 1753 1749 Desulfatibacillum alkenivorans species 0 1 259354 5873 30 213121 9 Desulfobulbaceae 1 0 family 1 753 Desulfotalea 0 1 genus 109168 2 752 84980 1 Desulfotalea psychrophila species 0 20 1861 Desulfurivibrio genus 0 1 2 427922 1841 427923 1 Desulfurivibrio alkaliphilus species 0 2 53318 Desulfocapsa genus 1 0 1023 3 Desulfocapsa sulfexigens species 0 1 65555 1020 2206 14 2 893 Desulfobulbus 1 0 genus 0 species Desulfobulbus sp. ORNL 1986146 1 2192 6 213113 order 1 0 Desulfurellales 4019 1 4018 5 117942 5 Desulfurellaceae family 0 1 2 84404 genus 0 1 Hippea 1731 2 1 84405 Hippea maritima 0 species 1729 2282 2 33001 2 genus 1 0 Desulfurella 33002 1 0 species Desulfurella acetivorans 2280 397204 1078 28216 352 1 0 class Betaproteobacteria 44 32003 Nitrosomonadales 0 1 order 16143 96 4858 37 12 206379 1 0 family Nitrosomonadaceae 27 3253 Nitrosomonas 1 0 genus 914 7 458 species 0 Nitrosomonas ureae 1 44577 916 1 0 species Nitrosomonas eutropha 630 1090 no rank 0 2 2609265 560 153948 1 Nitrosomonas sp. AL212 0 species 530 Nitrosomonas sp. Is79A3 0 species 261292 1 411 915 1 species 0 Nitrosomonas europaea 0 species Nitrosomonas communis 1 44574 637 1568 13 4 35798 genus 1 0 Nitrosospira 666 Nitrosospira briensis species 0 1 35799 1231 1 Nitrosospira multiformis species 0 456 0 species Nitrosospira lacus 1288494 1 433 1 0 family Gallionellaceae 90627 5 84 1758 314343 2 Sideroxydans 0 1 genus 1091 21 1 63745 species 0 Sideroxydans lithotrophicus 1070 583 4 2 96 Gallionella genus 1 0 Gallionella capsiferriformans species 0 1 370405 579 1 0 family Thiobacillaceae 2008790 3 17 1093 Thiobacillus genus 1 0 919 2 20 1076 1 36861 Thiobacillus denitrificans 0 species 1056 4 2772226 0 family 1380 2 1778653 Sulfuriferula 1 0 genus 784 4 no rank 0 2637784 1 780 780 0 species Sulfuriferula sp. AH1 1985873 1 21 596 genus 0 1 Sulfuricella 2 935200 649841 1 0 species Sulfuricella denitrificans 575 0 1 family Sterolibacteriaceae 5 2008793 89 2365 2 1054211 0 1 genus Sulfuritalea 1210 27 1 748811 species 0 Sulfuritalea hydrogenivorans 1183 genus 1 0 Methyloversatilis 378210 2 16 1066 1 2639971 no rank 0 1050 1050 1 1842540 0 species Methyloversatilis sp. RAC08 4593 23 14 32011 Methylophilaceae 1 0 family genus 1 0 Methylovorus 3 81682 41 1689 2634027 1 no rank 0 751 751 1 887061 species 0 Methylovorus sp. MP688 897 1 266009 Methylovorus glucosotrophus 0 species 16 2 Methylophilus 0 1 genus 323 6 317 1 2630143 no rank 0 317 0 species Methylophilus sp. TWE2 1 1662285 genus 0 1 Candidatus Methylopumilus 3 1679002 3 1278 697 Candidatus Methylopumilus planktonicus 0 species 1581557 1 578 0 species Candidatus Methylopumilus turicensis 1 1581680 1 0 genus Methylobacillus 404 2 9 576 567 Methylobacillus flagellatus species 0 405 1 704 1 3 359407 Methylotenera genus 1 0 species 0 Methylotenera mobilis 1 359408 191 1 1055487 Methylotenera versatilis species 0 512 no rank 0 33809 2 1477 270 1 543913 beta proteobacterium CB species 0 1207 0 species Betaproteobacteria bacterium GR16-43 1904640 1 414 21181 Rhodocyclales order 1 0 206389 22 3 2008795 0 1 family Azonexaceae 1094 16 2 73029 genus 1 0 Dechloromonas 1078 178 1 259537 0 species Dechloromonas aromatica 900 Rhodocyclaceae family 0 1 6 75787 99 4965 551759 2 Aromatoleum 1 0 genus 1403 16 551760 1 0 species Aromatoleum aromaticum 1387 1057 1 75788 0 no rank 1057 0 species Rhodocyclaceae bacterium 1 1898103 2406 218 2 146937 Azospira 0 1 genus 2188 0 species Azospira oryzae 1 146939 12 2008794 0 1 family Zoogloeaceae 14708 430 192 8716 genus 0 1 Thauera 33057 6 1191 1 59405 Thauera aromatica 0 species species 0 Thauera humireducens 1134435 1 2309 2609274 2 no rank 0 3863 1810 Thauera sp. K11 species 0 2005884 1 2053 85643 1 species 0 Thauera sp. MZ1T 1161 species 0 Thauera chlorobenzoica 96773 1 Azoarcus 1 0 genus 12960 5 285 5562 1067 2067960 1 0 species Azoarcus sp. SY39 0 no rank 2 2629479 3007 Azoarcus sp. KH32C species 0 1 748247 1279 Azoarcus sp. CIB 0 species 1 198107 1728 1203 Azoarcus olearius 0 species 418699 1 no rank 0 119066 12 12397 1451 7 2 1381133 Candidatus Profftella genus 0 1 1444 669502 1 Candidatus Profftella armatura species 0 660 genus 0 1301080 1 species 0 Candidatus Nasuia deltocephalinicola 1 1160784 660 Kinetoplastibacterium 0 1 genus 33055 6 37 9125 1247 Kinetoplastibacterium blastocrithidii species 0 1 233181 3128 species 0 Candidatus Kinetoplastibacterium desouzaii 994692 1 0 species Candidatus Kinetoplastibacterium crithidii 33056 1 2523 1000 994696 1 Candidatus Kinetoplastibacterium oncopeltii species 0 0 species Candidatus Kinetoplastibacterium galatii 994695 1 1190 1 189384 genus 0 14 Candidatus Tremblaya princeps 0 species 1 189385 14 1147 17 327159 2 Candidatus Accumulibacter genus 0 1 1130 1 327160 Candidatus Accumulibacter phosphatis 0 species 0 1 order Neisseriales 36 206351 346 31559 Neisseriaceae 1 0 family 22 481 132 17900 27 1095 genus 1 0 Vitreoscilla 3 59 315 1 2627922 no rank 0 Vitreoscilla sp. C1 0 species 96942 1 315 1 63 0 species Vitreoscilla filiformis 753 1042 421605 1 0 no rank 1 2052837 species 0 Neisseriaceae bacterium DSM 100970 1042 12 482 0 1 genus Neisseria 12886 344 1133 1 495 0 species Neisseria elongata 824 326523 1 Neisseria zoodegmatis 0 species 1 485 0 species Neisseria gonorrhoeae 879 490 1 Neisseria sicca 0 species 822 1 1853278 Neisseria sp. 10023 0 species 989 Neisseria meningitidis species 0 1 487 2807 1401 0 species Neisseria lactamica 486 1 1 28091 Neisseria weaveri species 0 649 882 species 0 Neisseria mucosa 1 488 0 no rank 2 2623750 2156 Neisseria sp. KEM232 0 species 655307 1 1523 633 Neisseria sp. 10022 species 0 1853276 1 1 71 genus 0 945 Simonsiella muelleri species 0 1 72 945 Eikenella genus 1 0 538 2 7 984 977 0 species Eikenella corrodens 539 1 genus 0 1 Snodgrassella 2 1193515 2 816 1 1196083 Snodgrassella alvi 0 species 814 13313 262 13 1499392 Chromobacteriaceae family 1 0 Pseudogulbenkiania genus 1 0 568394 2 15 1570 1555 0 no rank 2642558 1 1555 Pseudogulbenkiania sp. NH8B species 0 748280 1 32 1365 Aquaspirillum genus 0 1 2 187 1333 0 no rank 1 2620219 1333 0 species Aquaspirillum sp. LM1 1 1938604 2 885864 genus 0 1 Jeongeupia 1465 28 1437 1 2619593 no rank 0 1437 1 1906741 Jeongeupia sp. USM3 species 0 1 0 genus Laribacter 2 168470 22 1562 1 168471 Laribacter hongkongensis 0 species 1540 7089 90153 4 no rank 0 7089 173 4 535 Chromobacterium genus 1 0 1959 0 no rank 2641838 1 2059672 1 Chromobacterium sp. ATCC 53434 species 0 1959 2087 1 536 0 species Chromobacterium violaceum species 0 Chromobacterium vaccinii 1 1108595 2870 80840 235 1 0 order Burkholderiales 313369 3483 43 506 family 0 1 Alcaligenaceae 56378 478 Pusillimonas genus 0 1 2 305976 17 680 0 no rank 2640016 1 663 1007105 1 Pusillimonas sp. T7-7 species 0 663 478 0 genus 1 1100891 1 643674 Paenalcaligenes hominis 0 species 478 379 1 1472344 2 genus 1 0 Basilea 378 Basilea psittacipulmonis 0 species 1 1472345 Achromobacter 0 1 genus 222 6 662 20920 Achromobacter spanius 0 species 217203 1 3300 2564 no rank 0 2626865 1 2564 1 1758194 Achromobacter sp. AONIH1 0 species 217204 1 Achromobacter insolitus 0 species 1777 Achromobacter xylosoxidans species 0 1 85698 7913 4704 32002 1 Achromobacter denitrificans 0 species genus 1 0 Taylorella 3 29574 2 1348 603 0 species Taylorella asinigenitalis 1 84590 743 29575 1 Taylorella equigenitalis species 0 23926 799 517 17 genus 0 1 Bordetella 1416803 1 0 species Bordetella genomosp. 9 1403 1515 1 94624 0 species Bordetella petrii 1365 Bordetella pertussis species 0 1 520 Bordetella flabilis species 0 463014 1 1164 521 1 Bordetella avium species 0 888 1451 0 species Bordetella hinzii 1 103855 species 0 Bordetella genomosp. 8 1416806 1 1540 734 1 35814 Bordetella holmesii species 0 1298 1 2630031 no rank 0 Bordetella sp. H567 species 0 1 1697043 1298 1524 463040 1 0 species Bordetella genomosp. 13 123899 1 Bordetella trematum 0 species 1166 Bordetella bronchiseptica species 0 1 518 2814 Bordetella bronchialis species 0 1 463025 1740 463024 1 0 species Bordetella genomosp. 6 1570 species 0 Bordetella pseudohinzii 1331258 1 1571 1 519 Bordetella parapertussis species 0 1384 3 290425 genus 1 0 Advenella 1315 10 Advenella kashmirensis 0 species 1 310575 716 589 0 species Advenella mimigardefordensis 302406 1 2 90243 genus 1 0 Oligella 424 32 392 0 species Oligella urethralis 1 90245 39 1989 genus 1 0 Orrella 1921582 2 1950 species 0 Orrella dioscoreae 1 1851544 1584 49 359336 2 Castellaniella genus 1 0 Castellaniella defragrans 0 species 1 75697 1535 507 2 genus 0 1 Alcaligenes 2857 13 2844 511 1 Alcaligenes faecalis 0 species 69383 1432 59 80864 Comamonadaceae 0 1 family 1483 17 2 238749 Diaphorobacter 1 0 genus Diaphorobacter polyhydroxybutyrativorans species 0 1 1546149 1466 10382 173 34072 5 genus 0 1 Variovorax 2 663243 no rank 0 3261 2043 Variovorax sp. PMC12 0 species 1 2126319 Variovorax sp. PAMC 28711 0 species 1 1795631 1218 2122 436515 1 species 0 Variovorax boronicumulans 4826 34073 1 0 species Variovorax paradoxus Ottowia 1 0 genus 3 219181 23 2825 2645081 1 0 no rank 1199 1 1658672 species 0 Ottowia sp. oral taxon 894 1199 species 0 Ottowia sp. KADR8-3 2109914 1 1603 Acidovorax genus 0 1 9 12916 495 12086 553814 1 0 species Acidovorax sp. NA3 1057 1490 species 0 Acidovorax avenae 1 80867 6242 2684926 4 no rank 0 1512 Acidovorax sp. T1 species 0 1 1858609 1440 1 1842533 species 0 Acidovorax sp. RAC01 232721 1 Acidovorax sp. JS42 0 species 1526 1764 1 358220 0 species Acidovorax sp. KKS102 1484 1 80869 species 0 Acidovorax citrulli 1318 Acidovorax ebreus species 0 721785 1 11 1346 genus 1 0 Verminephrobacter 2 364316 1335 species 0 Verminephrobacter eiseniae 1 364317 2912 45 52972 3 Polaromonas 0 1 genus 1268 0 no rank 2638319 1 296591 1 Polaromonas sp. JS666 0 species 1268 species 0 Polaromonas naphthalenivorans 216465 1 1599 5332 50 4 283 Comamonas genus 1 0 1094 Comamonas kerstersii species 0 225992 1 2643 0 species Comamonas testosteroni 285 1 Comamonas serinivorans species 0 1 1082851 1545 36 1587 Melaminivora 1 0 genus 1649468 2 1551 no rank 0 1 2641902 0 species Melaminivora sp. SC2-9 1 2109913 1551 Limnohabitans 0 1 genus 3 665874 13 1252 1239 no rank 0 2626134 2 908 1678128 1 species 0 Limnohabitans sp. 63ED37-2 331 1678129 1 Limnohabitans sp. 103DPR2 species 0 Alicycliphilus genus 0 1 201096 2 14 2296 2282 1 179636 0 species Alicycliphilus denitrificans 23 3450 Ramlibacter 0 1 genus 2 174951 3427 94132 1 Ramlibacter tataouinensis species 0 80865 5 genus 1 0 Delftia 8758 303 no rank 0 2 2613839 4264 1 1920191 species 0 Delftia sp. HK171 2075 Delftia sp. Cs1-4 0 species 1 742013 2189 2198 Delftia acidovorans species 0 80866 1 1993 1 180282 Delftia tsuruhatensis species 0 1897 2490452 2 0 genus 793 Comamonadaceae bacterium A1 0 species 1458425 1 1104 1458426 1 Comamonadaceae bacterium B1 0 species 5 894 1 0 genus Simplicispira 2 352450 889 Simplicispira sp. SC1-8 species 0 2109915 1 Rhodoferax genus 1 0 28065 5 32 4956 1014 1 81479 0 species Rhodoferax antarcticus Rhodoferax ferrireducens species 0 1 192843 1517 Rhodoferax koreense 0 species 1842727 1 1512 881 1 1484693 species 0 Rhodoferax saidenbachensis 4143 69 4 47420 1 0 genus Hydrogenophaga 3043 2 2610897 0 no rank 1868 0 species Hydrogenophaga sp. PBC 1 795665 1175 Hydrogenophaga sp. RAC07 0 species 1842537 1 species 0 Hydrogenophaga crassostreae 1 1763535 1031 1 2678886 genus 0 1525 1525 2116657 1 Melaminivora sp. SC2-7 0 species 827 2 1436289 2 Candidatus Symbiobacter genus 1 0 1 1436290 Candidatus Symbiobacter mobilis species 0 825 16275 0 no rank 224471 17 66 1542 genus 1 0 Methylibium 2 316612 Methylibium petroleiphilum 0 species 1 105560 1476 1672 65 2 88 1 0 genus Leptothrix 34029 1 Leptothrix cholodnii 0 species 1607 1 0 genus Rhizobacter 2 212743 65 2022 0 species Rhizobacter gummiphilus 1 946333 1957 93681 2 Roseateles 0 1 genus 1965 37 1928 species 0 Roseateles depolymerans 76731 1 genus 1 0 Paucibacter 318147 2 19 1294 2642959 1 0 no rank 1275 species 0 Paucibacter sp. KCTC 42545 1 1768242 1275 2 65047 0 1 genus Mitsuaria 1739 77 2648776 1 no rank 0 1662 Mitsuaria sp. 7 species 0 1 1658665 1662 2 32012 Thiomonas genus 0 1 2200 35 Thiomonas intermedia species 0 1 926 2165 Rubrivivax 1 0 genus 2 28067 82 2608 28068 1 Rubrivivax gelatinosus species 0 2526 1233 0 species [Polyangium] brachysporum 413882 1 115927 830 119060 84 Burkholderiaceae family 1 0 2571159 1 0 genus 545 545 Paraburkholderia rhizoxinica species 0 1 412963 1301 2 4 44013 genus 0 1 Polynucleobacter 393 species 0 Polynucleobacter asymbioticus 1 576611 300 species 0 Polynucleobacter necessarius 576610 1 Polynucleobacter duraquae 0 species 1 1835254 606 11658 225 48736 5 1 0 genus Ralstonia 305 1 0 species Ralstonia solanacearum 5465 0 species Ralstonia pickettii 1 329 2656 190721 1 Ralstonia insidiosa 0 species 1431 0 species Ralstonia mannitolilytica 105219 1 1881 60074 3141 32008 41 genus 1 0 Burkholderia 2821 species 0 Burkholderia glumae 1 337 41899 1 species 0 Burkholderia plantarii 1734 11178 11 2613784 no rank 0 1393 Burkholderia sp. RPE67 0 species 758796 1 815 Burkholderia sp. Bp5365 0 species 1 1740162 975 Burkholderia sp. Bp7605 species 0 1 1740163 973 species 0 Burkholderia sp. HB1 1 1678678 0 species Burkholderia sp. YI23 1097668 1 1579 795 1 1795043 Burkholderia sp. PAMC 26561 0 species 777 416344 1 0 species Burkholderia sp. KJ006 species 0 Burkholderia sp. PAMC 28687 1 1795874 775 825 0 species Burkholderia sp. 2002721687 1 1468409 1048 640512 1 0 species Burkholderia sp. CCGE1003 1223 Burkholderia sp. CCGE1001 species 0 1 640510 29114 87882 19 species group 0 965 1 265293 [Pseudomonas] mesoacidophila species 0 4605 1 95486 0 species Burkholderia cenocepacia 687 1503055 1 Burkholderia territorii species 0 Burkholderia lata 0 species 1 482957 1653 Burkholderia cepacia species 0 292 1 5194 874 1 1503054 species 0 Burkholderia stagnalis 969 1207504 1 species 0 Burkholderia pseudomultivorans 1134 1 152480 Burkholderia ambifaria 0 species 1 488729 0 species Burkholderia metallica 649 488731 1 0 species Burkholderia seminalis 772 569 Burkholderia pyrrocinia 0 species 1 60550 0 species Burkholderia diffusa 1 488732 628 Burkholderia contaminans 0 species 488447 1 830 2815 Burkholderia ubonensis species 0 1 101571 0 species Burkholderia multivorans 1 87883 2196 60552 1 Burkholderia vietnamiensis 0 species 1290 886 1 152500 Burkholderia dolosa species 0 488446 1 species 0 Burkholderia latens 821 95485 1 Burkholderia stabilis species 0 1577 9128 111527 7 0 species group 2089 1 57975 Burkholderia thailandensis 0 species 1 13373 Burkholderia mallei 0 species 910 0 species Burkholderia sp. MSMB0852 1 1637841 798 1637831 1 Burkholderia sp. MSMB617WGS species 0 690 Burkholderia sp. MSMB0266 0 species 1 1637837 772 1 28450 0 species Burkholderia pseudomallei 2385 1484 species 0 Burkholderia oklahomensis 342113 1 0 species Burkholderia gladioli 1 28095 2958 14191 375 1822464 12 0 1 genus Paraburkholderia 2615204 1 no rank 0 968 1926494 1 0 species Paraburkholderia sp. SOS3 968 1207 Paraburkholderia terrae 0 species 1 311230 1 75105 Paraburkholderia caribensis 0 species 1809 Paraburkholderia hospita 0 species 1 169430 1196 1324 148447 1 Paraburkholderia phymatum 0 species 1169 species 0 Paraburkholderia fungorum 1 134537 1 2026199 Paraburkholderia aromaticivorans species 0 1141 1184 1 252970 Paraburkholderia phenoliruptrix 0 species species 0 Paraburkholderia xenovorans 1 36873 1450 948107 1 Paraburkholderia sprentiae species 0 1209 1159 1 261302 Paraburkholderia phytofirmans species 0 93217 10 Pandoraea 0 1 genus 9397 246 1 93221 species 0 Pandoraea pulmonicola 1289 Pandoraea pnomenusa 0 species 93220 1 1102 903 Pandoraea vervacti species 0 1 656178 656179 1 species 0 Pandoraea faecigallinarum 1064 1 93218 0 species Pandoraea apista 963 1057 species 0 Pandoraea oxalativorans 1 573737 Pandoraea sputorum species 0 1 93222 998 Pandoraea thiooxydans species 0 445709 1 962 species 0 Pandoraea norimbergensis 1 93219 813 16684 899 9 106589 0 1 genus Cupriavidus 4249 0 no rank 2 2640874 2143 species 0 Cupriavidus sp. USMAA2-4 1 876364 1389192 1 species 0 Cupriavidus sp. USMAHM13 2106 2083 367825 1 0 species Cupriavidus sp. USMAA1020 Cupriavidus necator species 0 106590 1 3122 0 species Cupriavidus basilensis 1 68895 1969 Cupriavidus metallidurans species 0 119219 1 1602 1 248026 Cupriavidus pinatubonensis species 0 1385 82541 1 Cupriavidus gilardii species 0 1375 1247 1827195 1 0 genus Burkholderia sp. RPE64 species 0 1 758793 1247 1906 80841 2 0 no rank Burkholderiales bacterium YL45 species 0 1834205 1 1114 1 1469502 Burkholderiales bacterium GJ-E10 species 0 792 325 50017 1 0 family Oxalobacteraceae 75682 29 2 846 Oxalobacter genus 1 0 18675 2 1 847 0 species Oxalobacter formigenes 18673 Janthinobacterium genus 0 1 7 29580 114 7442 4802 no rank 0 4 2610881 0 species Janthinobacterium sp. 1_2014MBL_MicDiv 1644131 1 1950 1 1236179 Janthinobacterium sp. B9-8 0 species 741 Janthinobacterium sp. Marseille 0 species 1 375286 738 1373 1938606 1 Janthinobacterium sp. LM6 0 species 0 species Janthinobacterium agaricidamnosum 55508 1 1132 Janthinobacterium svalbardensis species 0 368607 1 1394 149698 6 Massilia genus 0 1 9141 214 species 0 Massilia sp. B2 2045208 1 1551 species 0 Massilia sp. ZMN-3 2072590 1 2082 1 1141883 Massilia putida 0 species 1900 2 2609279 0 no rank 3394 1511 1 1707785 0 species Massilia sp. WG5 Massilia sp. NR 4-1 species 0 1678028 1 1883 4 202907 genus 1 0 Collimonas 4985 154 1377 279058 1 0 species Collimonas arenae 1 279113 0 species Collimonas pratensis 1521 1933 Collimonas fungivorans 0 species 158899 1 3 303379 genus 0 1 Herminiimonas 1170 17 1809410 1 0 species Herminiimonas arsenitoxidans 606 1 204773 0 species Herminiimonas arsenicoxydans 547 Herbaspirillum genus 1 0 6 963 281 8279 80842 1 Herbaspirillum rubrisubalbicans species 0 1717 1 964 species 0 Herbaspirillum seropedicae 1950 1032 1 2624150 no rank 0 2025949 1 Herbaspirillum sp. meg3 0 species 1032 1095 species 0 Herbaspirillum hiltneri 1 341045 2204 0 species Herbaspirillum frisingense 1 92645 0 class 5 580370 1865 10 1865 Mariprofundales 0 1 order 580371 5 4 580372 family 0 1 Mariprofundaceae 1855 9 1846 6 3 377315 genus 1 0 Mariprofundus 954 1921086 1 0 species Mariprofundus aestuarium 886 0 species Mariprofundus ferrinatatus 1 1921087 6 1807140 0 class 2528 6 225057 0 1 order Acidithiobacillales 2528 65 2463 19 225058 5 1 0 family Acidithiobacillaceae Acidithiobacillus genus 0 1 119977 4 19 2444 160808 1 Acidithiobacillus ferrivorans species 0 718 824 920 1 0 species Acidithiobacillus ferrooxidans 1 33059 Acidithiobacillus caldus species 0 883 0 clade 95 1783257 46691 0 phylum 204428 23 8159 8159 17 23 204429 0 1 class Chlamydiia 4100 34 1963360 8 Parachlamydiales order 0 1 280 0 family 1 92714 280 1 71666 0 genus 71667 1 Waddlia chondrophila species 0 280 3499 92713 3 family 0 2731 83551 1 0 genus 2731 83552 1 Parachlamydia acanthamoebae 0 species 2 282132 1 0 genus Candidatus Protochlamydia 768 29 389348 1 0 species Candidatus Protochlamydia naegleriophila 739 3 92712 Simkaniaceae 0 1 family 287 30 34093 2 genus 1 0 Simkania 257 3 1 83561 Simkania negevensis 0 species 254 0 1 order Chlamydiales 51291 14 15 4042 809 13 Chlamydiaceae family 0 1 4027 8 12 1113537 no rank 0 4019 810 12 0 1 genus Chlamydia 4019 94 215 species 0 Chlamydia trachomatis 1 813 351 0 species Chlamydia psittaci 1 83554 323 83556 1 Chlamydia felis 0 species species 0 Chlamydia pecorum 85991 1 170 648 Chlamydia gallinacea species 0 1457153 1 83559 1 Chlamydia suis 0 species 230 844 species 0 Chlamydia muridarum 1 83560 species 0 Chlamydia avium 1457141 1 427 236 Chlamydia abortus species 0 1 83555 1 83558 species 0 Chlamydia pneumoniae 242 Chlamydia caviae species 0 83557 1 239 0 phylum 256845 3 7157 Lentisphaeria class 1 0 3 1313211 19 7157 Victivallales 1 0 order 278082 2 992 7138 no rank 0 1674876 1 6146 2094242 1 Victivallales bacterium CCUG 44730 0 species 6146 phylum 1 0 Verrucomicrobia 27 74201 27 13354 6255 77 414999 11 Opitutae 0 1 class 1 0 order Puniceicoccales 3 415001 4 528 0 family 2 415002 524 0 1 genus Coraliomargarita 2 442430 6 524 1 395922 0 species Coraliomargarita akajimensis 518 Opitutales order 0 1 7 415000 168 5650 0 1 family Opitutaceae 134623 6 45 5482 no rank 0 1 278955 2077 2077 1 794903 species 0 Opitutaceae bacterium TAV5 1666 26 178440 2 1 0 genus Opitutus Opitutus terrae species 0 1 107709 1640 1961799 2 Lacunisphaera 0 1 genus 1694 27 0 species Lacunisphaera limnophila 1838286 1 1667 134549 1 class 0 292 292 genus 0 1 134550 1 2648876 no rank 0 292 0 species Candidatus Xiphinematobacter sp. Idaho Grape 1 1704307 292 3662 6 203494 6 1 0 class Verrucomicrobiae 48461 5 0 1 order Verrucomicrobiales 3656 75 Akkermansiaceae 1 0 family 1647988 4 4 3581 3 239934 Akkermansia 1 0 genus 3577 11 1 1679444 Akkermansia glycaniphila 0 species 1894 Akkermansia muciniphila 0 species 239935 1 1672 6 1128 1 0 class Methylacidiphilae 1955630 6 2 1122 Methylacidiphilales order 0 1 5 717963 717964 4 family 1 0 Methylacidiphilaceae 1120 1 6 1119 genus 1 0 Methylacidiphilum 3 511745 0 species Methylacidiphilum infernorum 511746 1 478 1 591154 Methylacidiphilum fumariolicum species 0 635 1990 0 no rank 2 417295 1093 Verrucomicrobia bacterium IMCC26134 0 species 1 1637999 897 Verrucomicrobia bacterium species 0 2026799 1 15 16849 1 0 phylum Planctomycetes 37 203682 2517206 3 0 class 1227 1127829 3 Candidatus Brocadiales order 1 0 1227 15 1127830 2 0 family 1212 1 0 genus Candidatus Kuenenia 2 380738 3 1212 1209 Candidatus Kuenenia stuttgartiensis 0 species 174633 1 16 2878 1 0 class Phycisphaerae 666505 7 1258 2483366 2 order 0 1258 family 0 2 2483367 1258 0 genus 2483368 2 542 1 1941349 Phycisphaerae bacterium ST-PulAB-D4 0 species Phycisphaerae bacterium L21-RPul-D3 species 0 1940790 1 716 Phycisphaerales 1 0 order 666506 4 57 1604 3 666507 family 0 1 Phycisphaeraceae 1547 9 1 0 genus Phycisphaera 2 666508 2 1538 1536 1 547188 species 0 Phycisphaera mikurensis 88 12729 Planctomycetia class 0 1 203683 26 3258 0 order 2691356 7 Isosphaeraceae family 1 0 7 1763524 28 3258 992 2 466152 2 Singulisphaera 1 0 genus Singulisphaera acidiphila 0 species 466153 1 990 1489 16 1763521 2 Paludisphaera 0 1 genus species 0 Paludisphaera borealis 1 1387353 1473 1 749 Isosphaera 0 1 genus 127 2 0 species Isosphaera pallida 128 1 748 874 order 0 3 2691355 874 3 1914233 3 Gemmataceae family 1 0 2 113 Gemmata 1 0 genus 871 4 0 no rank 2622970 1 867 867 1 1630693 Gemmata sp. SH-PL17 species 0 0 order 5 2691354 2822 1782 family 0 1 2691358 0 genus 1 1676125 1782 1 1331910 Thermogutta terrifontis 0 species 1782 1040 2691357 4 0 family Rhodopirellula 1 0 genus 2 265488 1 575 574 265606 1 0 species Rhodopirellula baltica 465 7 2 123 genus 1 0 Pirellula 458 125 1 Pirellula staleyi species 0 299 5687 Planctomycetales order 1 0 112 10 5388 43 126 9 Planctomycetaceae 0 1 family genus 1 0 Fuerstia 2 1936111 7 743 736 0 species Fuerstia marisgermanicae 1891926 1 135 3547 0 1 genus Planctomyces 118 3 2648843 2 no rank 0 3412 2208 1636152 1 0 species Planctomyces sp. SH-PL62 0 species Planctomyces sp. SH-PL14 1632864 1 1204 0 genus 1 1649490 510 510 1 119 Rubinisphaera brasiliensis 0 species 1649480 2 Planctopirus 0 1 genus 545 1 120 1 0 species Planctopirus limnophila 544 phylum 0 134625 5 1172 class 0 1 Kiritimatiellae 1921781 5 10 1172 Kiritimatiellales 1 0 order 4 1921782 9 1162 22 1153 family 0 1 Kiritimatiellaceae 3 1921783 1921784 2 0 1 genus Kiritimatiella 1131 9 1122 Kiritimatiella glycovorans species 0 1 1307763 phylum 1 0 Acidobacteria 57723 21 2 10605 17 204432 class 1 0 Acidobacteriia 9452 105 7444 86 204433 12 order 0 1 Acidobacteriales 204434 11 Acidobacteriaceae family 1 0 7358 147 genus 1 0 Granulicella 940557 3 200 2410 1138 Granulicella tundricola 0 species 1 940615 940614 1 Granulicella mallensis 0 species 1072 1429 35 33973 2 Acidobacterium genus 1 0 Acidobacterium capsulatum 0 species 33075 1 1394 4 2143 Terriglobus 0 1 genus 392733 3 1025 0 species Terriglobus saanensis 870903 1 1114 Terriglobus roseus species 0 1 392734 14 1229 0 1 genus Candidatus Koribacter 658061 2 Candidatus Koribacter versatilis 0 species 1 658062 1215 1903 29 332160 4 1 0 order Solibacterales 1874 24 3 332161 1 0 family Solibacteraceae 1850 59 2 332162 Candidatus Solibacter 0 1 genus 332163 1 species 0 Candidatus Solibacter usitatus 1791 0 1 class Blastocatellia 1562566 3 9 1151 458032 2 genus 0 1 Chloracidobacterium 1142 10 1132 458033 1 Chloracidobacterium thermophilum species 0 phylum 0 200918 44 46475 188708 44 Thermotogae class 0 1 46475 43 2419 28 Thermotogales 0 1 order 26390 16 7177 24 188709 17 Thermotogaceae family 0 1 4272 77 11 2335 Thermotoga 0 1 genus 93930 1 species 0 Thermotoga naphthophila 276 species 0 Thermotoga profunda 1508420 1 1558 402 2337 1 Thermotoga neapolitana species 0 no rank 0 2631113 4 1155 species 0 Thermotoga sp. Cell2 1157947 1 292 401 126738 1 0 species Thermotoga sp. RQ7 Thermotoga sp. RQ2 0 species 126740 1 214 248 Thermotoga sp. 2812B 0 species 1 1157948 311 1 1508419 0 species Thermotoga caldifontis 248 Thermotoga maritima 0 species 2336 1 93929 1 Thermotoga petrophila species 0 245 51 2881 1 0 genus Pseudothermotoga 1643951 5 177758 1 species 0 Pseudothermotoga lettingae 656 38322 1 Pseudothermotoga elfii 0 species 668 119394 1 species 0 Pseudothermotoga thermarum 958 1 57487 0 species Pseudothermotoga hypogea 548 19197 40 10 1643950 Fervidobacteriaceae family 0 1 70 13311 Thermosipho 0 1 genus 5 2420 1 46541 Thermosipho melanesiensis 0 species 3172 no rank 0 2676525 2 6263 3124 1 1462747 Thermosipho sp. 1063 species 0 3139 0 species Thermosipho sp. 1070 1437364 1 Thermosipho africanus species 0 2421 1 3806 5846 30 2422 4 Fervidobacterium 0 1 genus 2798 1 2424 Fervidobacterium nodosum species 0 2150 1 93466 0 species Fervidobacterium pennivorans 2423 1 0 species Fervidobacterium islandicum 868 17934 36 8 1643947 order 0 1 Petrotogales 0 family 1643949 7 17898 3044 15 2 28236 Petrotoga 1 0 genus 3029 species 0 Petrotoga mobilis 69499 1 11597 4 3 160798 Marinitoga genus 0 1 149715 1 Marinitoga piezophila 0 species 5886 5707 1 2640159 0 no rank 0 species Marinitoga sp. 1137 1545835 1 5707 3257 15 1511648 2 1 0 genus Defluviitoga 3242 1 1006576 species 0 Defluviitoga tunisiensis 1 2108 order 1 0 Kosmotogales 1643946 7 2107 6 6 1643948 Kosmotogaceae family 1 0 3 610 Mesotoga 0 1 genus 2 1184396 1 1184387 Mesotoga prima 0 species 607 1491 2 3 651456 Kosmotoga genus 1 0 560 species 0 Kosmotoga pacifica 1330330 1 929 1 651457 Kosmotoga olearia species 0 0 phylum 12 508458 9189 649775 12 Synergistia class 0 1 9189 29 11 649776 Synergistales 1 0 order 9160 24 Synergistaceae family 0 1 649777 10 600 9136 336260 2 Thermovirga genus 0 1 715 6 709 336261 1 Thermovirga lienii species 0 0 genus 81466 1 510 1 81468 Aminobacterium colombiense 0 species 510 2 544 Acetomicrobium 1 0 genus 49894 2 542 1 97477 0 species Acetomicrobium mobile Cloacibacillus genus 1 0 508459 2 16 5823 5807 0 species Cloacibacillus porcorum 1197717 1 2 81461 Thermanaerovibrio genus 1 0 944 6 938 0 species Thermanaerovibrio acidaminovorans 81462 1 6059 phylum 0 6 68297 Dictyoglomia 0 1 class 203486 6 1 6059 5 6058 1 0 order Dictyoglomales 203487 5 1 6053 family 0 1 Dictyoglomaceae 203488 4 1 6052 0 1 genus Dictyoglomus 13 3 2856 species 0 Dictyoglomus thermophilum 1 14 1 513050 0 species Dictyoglomus turgidum 3195 2334 0 no rank 3 2323 2334 1783234 3 clade 0 clade 0 2 95901 1986 1986 2497643 2 0 class 1986 0 order 2497644 2 family 0 2497645 2 1986 genus 1 0 Candidatus Babela 2 1551504 2 1986 1984 1 673862 species 0 Candidatus Babela massiliensis 348 phylum 0 95818 1 no rank 0 1895827 1 348 348 species 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 1 2056494 7 200940 0 phylum 6836 class 0 1 Thermodesulfobacteria 67799 7 2 6836 order 1 0 Thermodesulfobacteriales 6 188710 6 6834 6828 4 188711 5 family 0 1 Thermodesulfobacteriaceae 4875 0 genus 2 1740 Thermodesulfobacterium geofontis 0 species 1295609 1 3801 1074 Thermodesulfobacterium commune species 0 1 1741 716 444090 1 0 genus 1 1653476 Caldimicrobium thiodismutans 0 species 716 241192 1 0 genus 1233 species 0 Thermodesulfatator indicus 1 171695 1233 100944 phylum 0 58 203691 58 203692 Spirochaetia class 0 1 100944 134 9026 9 1643688 order 0 1 0 family Leptospiraceae 9 170 46 9026 1 0 genus Leptospira 6 171 25 7836 1111 0 species Leptospira alstonii 28452 1 1 173 0 species Leptospira interrogans 3311 172 1 Leptospira biflexa species 0 1218 1188 Leptospira santarosai species 0 1 28183 Leptospira borgpetersenii 0 species 1 174 983 1144 2 2 338321 Turneriella genus 1 0 1142 Turneriella parva 0 species 29510 1 1643686 7 0 1 order Brachyspirales 29827 23 29804 605 6 143786 Brachyspiraceae 0 1 family Brachyspira 1 0 genus 5 29521 553 29199 6310 Brachyspira murdochii 0 species 1 84378 84377 1 Brachyspira intermedia 0 species 6662 Brachyspira pilosicoli 0 species 52584 1 9311 6363 species 0 Brachyspira hyodysenteriae 159 1 61957 920 41 136 1 0 order Spirochaetales 581 37199 Spirochaetaceae 1 0 family 137 23 1911556 1 0 genus 1340 1 55206 species 0 Sediminispirochaeta smaragdinae 1340 0 1 genus Sphaerochaeta 4 399320 49 3981 976 Sphaerochaeta coccoides 0 species 273376 1 1 1131707 Sphaerochaeta pleomorpha species 0 1336 1620 1131703 1 Sphaerochaeta globosa 0 species 18 2642 1 0 genus Spirochaeta 3 146 1282 1 46355 Spirochaeta africana species 0 1342 1 154 species 0 Spirochaeta thermophila 1616789 2 Salinispira 0 1 genus 1059 1 Salinispira pacifica species 0 1 1307761 1058 27596 1244 157 12 Treponema 0 1 genus 139 1 160 0 species Treponema pallidum 1 88058 species 0 Treponema primitia 1567 no rank 0 1 2638727 3090 3090 species 0 Treponema sp. OMZ 838 1539298 1 2314 158 1 Treponema denticola 0 species 145 53435 1 species 0 Treponema paraluiscuniculi 1 167 species 0 Treponema succinifaciens 7083 81028 1 Treponema brennaborense 0 species 3034 0 species Treponema azotonutricium 1 150829 1455 1218 Treponema caldarium 0 species 215591 1 4546 species 0 Treponema putidum 221027 1 Treponema pedis species 0 1 409322 1761 Borreliaceae family 1 0 1643685 17 8 23838 Borrelia genus 1 0 138 8 587 12083 140 1 Borrelia hermsii 0 species 1609 1048 Borrelia turicatae 0 species 142 1 1320 species 0 Borrelia parkeri 141 1 2167 0 species Borrelia duttonii 1 40834 Borrelia anserina species 0 143 1 1137 44449 1 0 species Borrelia recurrentis 1857 2358 1 47466 Borrelia miyamotoi species 0 8 64895 Borreliella genus 0 1 11747 183 species 0 Borreliella bissettii 1 64897 1270 0 species Borreliella garinii 1 29519 2366 0 species Borreliella afzelii 29518 1 870 2069 Borreliella burgdorferi 0 species 1 139 1 1674146 Borrelia mayonii species 0 1778 Borreliella valaisiana 0 species 1 62088 1666 1545 species 0 Borreliella bavariensis 664662 1 0 phylum 1 2138240 570 1 2138243 0 class 570 2138246 1 order 0 570 570 0 family 1 2138247 68335 1 genus 0 570 Coprothermobacter proteolyticus species 0 1 35786 570 phylum 0 26 32066 217861 72 217861 Fusobacteriia class 1 0 203490 26 217789 207 203491 25 order 1 0 Fusobacteriales 171182 93 203492 12 1 0 family Fusobacteriaceae 2 5591 Ilyobacter 0 1 genus 167639 2 5589 species 0 Ilyobacter polytropus 1 167642 genus 0 1 Fusobacterium 9 848 514 165498 0 species Fusobacterium ulcerans 861 1 10290 860 1 species 0 Fusobacterium periodonticum 27664 species 0 Fusobacterium mortiferum 1 850 23103 1 1583098 Fusobacterium hwasookii 0 species 17739 2526 1 859 Fusobacterium necrophorum 0 species 849 1 0 species Fusobacterium gonidiaformans 5305 851 1 Fusobacterium nucleatum 0 species 54909 species 0 Fusobacterium varium 1 856 23448 1129771 12 1 0 family Leptotrichiaceae 46400 203 168808 2 Sneathia genus 1 0 7137 6 187101 1 Sneathia amnii species 0 7131 2 7707 genus 1 0 Sebaldella 32068 2 0 species Sebaldella termitidis 1 826 7705 0 1 genus Streptobacillus 2 34104 27 10892 0 species Streptobacillus moniliformis 1 34105 10865 Leptotrichia 0 1 genus 5 32067 88 20461 Leptotrichia buccalis 0 species 40542 1 4951 15422 3 2633022 0 no rank 4535 species 0 Leptotrichia sp. oral taxon 847 1785996 1 5115 712368 1 0 species Leptotrichia sp. oral taxon 498 5772 Leptotrichia sp. oral taxon 212 species 0 712357 1 21823 phylum 0 27 200783 Aquificae 0 1 class 187857 27 23 21823 3 3885 order 0 1 Desulfurobacteriales 1485951 5 family 1 0 Desulfurobacteriaceae 4 558314 2 3882 1 0 genus Thermovibrio 2 171868 3 290 0 species Thermovibrio ammonificans 228745 1 287 3590 0 genus 1 64159 3590 Desulfurobacterium thermolithotrophum species 0 64160 1 17915 5 32069 21 Aquificales order 1 0 843 90150 2 0 no rank 4 843 genus 1 0 Thermosulfidibacter 2 412592 839 1 412593 0 species Thermosulfidibacter takaii 9090 6 6 224027 family 0 1 Hydrogenothermaceae 3 212790 genus 0 1 Sulfurihydrogenibium 6945 7 1 2619248 0 no rank 4204 0 species Sulfurihydrogenibium sp. YO3AOP1 436114 1 4204 309806 1 0 species Sulfurihydrogenibium azorense 2734 2139 1 182899 2 Persephonella genus 1 0 2138 Persephonella marina 0 species 1 309805 7977 37 12 64898 Aquificaceae family 1 0 0 1 genus Thermocrinis 3 75905 1 632 457 Thermocrinis ruber 0 species 75906 1 174 1 136094 Thermocrinis albus 0 species 677 genus 0 939 1 677 Hydrogenobacter thermophilus 0 species 1 940 310 genus 0 1 2713 Aquifex aeolicus species 0 1 63363 310 6321 80 168657 6 Hydrogenobaculum genus 0 1 no rank 0 2622382 5 6241 380749 1 Hydrogenobaculum sp. Y04AAS1 0 species 921 1330 547146 1 Hydrogenobaculum sp. SN species 0 1 547143 Hydrogenobaculum sp. 3684 0 species 1330 Hydrogenobaculum sp. SHO species 0 1 547145 1330 1330 species 0 Hydrogenobaculum sp. HO 547144 1 phylum 0 40117 13 7165 class 0 1 Nitrospira 13 203693 46 7165 189778 12 Nitrospirales 0 1 order 7119 25 7094 35 11 189779 Nitrospiraceae 0 1 family 2490 40 1234 5 genus 1 0 Nitrospira 530 1325564 1 species 0 Nitrospira japonica Nitrospira moscoviensis 0 species 42253 1 955 524 1715989 1 0 species Candidatus Nitrospira inopinata 441 Nitrospira defluvii species 0 330214 1 1 0 genus Leptospirillum 179 4 10 1357 0 species group 261385 1 479 1 1660083 species 0 Leptospirillum sp. Group II 'CF-1' 479 1 261386 0 species group 470 470 species 0 Leptospirillum ferriphilum 1 178606 398 0 species group 655606 1 398 180 1 Leptospirillum ferrooxidans 0 species 28261 1 0 genus 3212 Thermodesulfovibrio yellowstonii 0 species 1 28262 3212 13086610 0 clade 1783272 1723 1798711 149 0 clade 120104 50 120104 Cyanobacteria phylum 0 1 149 1117 order 1 0 Synechococcales 1890424 54 282 42245 1217 0 family 1890429 1 0 genus 155977 1 1217 1217 155978 1 Acaryochloris marina 0 species 23 3469 1 0 family Leptolyngbyaceae 1890438 6 0 1 genus Leptolyngbya 5 47251 7 3446 2808 3 2650499 0 no rank 1005 1 1752064 Leptolyngbya sp. NIES-3755 species 0 1263 species 0 Leptolyngbya sp. O-77 1 1080068 540 1 111781 Leptolyngbya sp. PCC 7376 0 species 631 Leptolyngbya boryana species 0 1 1184 370 2 1890436 0 family 370 20 1152 2 0 1 genus Pseudanabaena 350 no rank 0 2593292 1 82654 1 Pseudanabaena sp. PCC 7367 0 species 350 33 1890426 1 0 family Synechococcaceae 19921 91 genus 0 1 Synechococcus 26 1129 289 14784 no rank 0 2626047 23 13406 Synechococcus sp. CC9605 0 species 1 110662 597 321332 1 species 0 Synechococcus sp. JA-2-3B'a(2-13) 900 587 Synechococcus sp. WH 7803 0 species 1 32051 0 species Synechococcus sp. UTEX 2973 1350461 1 643 1916956 1 Synechococcus sp. SynAce01 species 0 666 625 1 29410 Synechococcus sp. WH 8103 species 0 249 0 species Synechococcus sp. CC9311 64471 1 1 32049 Synechococcus sp. PCC 7002 species 0 552 647 Synechococcus sp. WH 8102 species 0 84588 1 1 195498 species 0 Synechococcus sp. PCC 7117 466 510 1 1280380 species 0 Synechococcus sp. KORDI-100 species 0 Synechococcus sp. WH 8109 166314 1 561 321327 1 Synechococcus sp. JA-3-3Ab species 0 1225 1131 1173263 1 species 0 Synechococcus sp. PCC 7502 457 Synechococcus sp. NIES-970 species 0 1 1827144 585425 1 0 species Synechococcus sp. KORDI-52 435 species 0 Synechococcus sp. PCC 6312 1 195253 423 195248 1 Synechococcus sp. PCC 8807 0 species 324 0 species Synechococcus sp. KORDI-49 1 585423 691 Synechococcus sp. CC9902 species 0 316279 1 360 Synechococcus sp. PCC 73109 0 species 1 374982 275 340 1 374981 0 species Synechococcus sp. PCC 7003 species 0 Synechococcus sp. RCC307 1 316278 742 Synechococcus lividus species 0 1 33070 493 596 Synechococcus elongatus 0 species 32046 1 3525 61 167375 3 genus 1 0 Cyanobium 1 59930 Cyanobium gracile 0 species 1703 1 2627006 0 no rank 1761 Cyanobium sp. NIES-981 0 species 1851505 1 1761 346 1 146785 0 genus Thermosynechococcus elongatus 0 species 1 146786 346 8 1175 Dactylococcopsis 1 0 genus 2 13034 1 292566 Dactylococcopsis salina 0 species 1167 1155 family 0 1890428 4 Synechocystis genus 1 0 1142 4 41 1155 no rank 0 2640012 3 1114 species 0 Synechocystis sp. IPPAS B-1465 1 2116702 393 393 1 1148 Synechocystis sp. PCC 6803 0 species 328 1 1147 Synechocystis sp. PCC 6714 species 0 803 0 family 2 2303730 3 803 genus 0 1 Halomicronema 170610 2 800 Halomicronema hongdechloris species 0 1209493 1 Prochloraceae 0 1 family 5 1213 41 15028 1218 4 Prochlorococcus genus 0 1 14987 63 1219 1 Prochlorococcus marinus 0 species 12837 2087 0 no rank 2 2627481 Prochlorococcus sp. MIT 0801 0 species 1501269 1 815 species 0 Prochlorococcus sp. MIT 0604 1 1501268 1272 33590 subclass 0 1301283 44 1118 24 Chroococcales order 0 1 23356 34 22 2656 0 1 family Microcystaceae 1890449 4 2634 2 3 1125 Microcystis 1 0 genus 643 no rank 0 2643300 1 643 1 1967666 Microcystis sp. MC19 0 species 1989 Microcystis aeruginosa species 0 1 1126 9457 14 1890450 9 Aphanothecaceae 0 1 family 0 no rank 92682 2 715 76023 2 Halothece 1 0 genus 715 8 707 1 2632878 no rank 0 707 1 65093 species 0 Halothece sp. PCC 7418 1 1453359 0 genus 1623 1 713887 species 0 Candidatus Atelocyanobacterium thalassa 1623 genus 0 1 263510 1871 1 2546360 species 0 1871 Cyanothece sp. ATCC 51142 strain 0 43989 1 1871 3405 0 genus 2 28070 1481 species 0 2546356 1 1481 65393 1 strain 0 Cyanothece sp. PCC 7424 2546359 1 species 0 1924 1924 497965 1 0 strain Cyanothece sp. PCC 7822 1829 2 2546365 genus 0 2546366 2 species 0 1829 845 strain 0 Cyanothece sp. PCC 8801 1 41431 984 Cyanothece sp. PCC 8802 0 strain 395962 1 1890452 3 Cyanobacteriaceae family 0 1 2470 2 2468 3 2 102234 1 0 genus Cyanobacterium 1 379064 Cyanobacterium aponinum 0 species 2465 Chroococcaceae 0 1 family 1890464 7 16 8739 3 669357 genus 0 1 Geminocystis 5464 24 2625037 2 no rank 0 5440 2874 0 species Geminocystis sp. NIES-3708 1615909 1 2566 0 species Geminocystis sp. NIES-3709 1 1617448 2181 1 268175 genus 0 2181 no rank 0 1 2648896 2005460 1 species 0 Chondrocystis sp. NIES-4102 2181 4 1078 1 0 genus Gloeocapsa 2 102231 1074 2623012 1 no rank 0 species 0 Gloeocapsa sp. PCC 7428 1173026 1 1074 10234 79 1150 20 Oscillatoriales order 1 0 2 3025 1 0 family Microcoleaceae 1892252 4 0 genus 1 44471 499 499 2642155 1 0 no rank 1 1173027 Microcoleus sp. PCC 7113 species 0 499 1205 2 Trichodesmium 1 0 genus 2524 1 Trichodesmium erythraeum 0 species 1206 1 2523 1892249 3 family 0 1 Cyanothecaceae 742 20 36 722 Cyanothece 1 0 genus 2 43988 686 2649277 1 0 no rank 395961 1 Cyanothece sp. PCC 7425 species 0 686 6 1892254 0 1 family Oscillatoriaceae 3418 10 genus 0 1 Moorea 1155738 2 3 757 0 species Moorea producens 1155739 1 754 genus 1 0 Oscillatoria 1158 3 3 2651 482564 1 species 0 Oscillatoria nigro-viridis 946 1 118323 0 species Oscillatoria acuminata 1702 Coleofasciculaceae 0 1 family 1892251 3 8 1215 63132 2 Geitlerinema genus 0 1 1207 11 1196 2648775 1 no rank 0 1196 species 0 Geitlerinema sp. PCC 7407 1173025 1 1892255 3 0 1 family Gomontiellaceae 1755 30 10 1725 genus 0 1 Crinalium 241421 2 1715 241425 1 Crinalium epipsammum 0 species 52604 7 1 0 order Pleurocapsales 4060 12 741 2 1890500 family 0 44474 2 Pleurocapsa 1 0 genus 741 6 1 54308 Pleurocapsa minor 0 species 735 3307 20 1890498 4 Dermocarpellaceae 1 0 family 5 3287 Stanieria genus 0 1 102115 3 1 102116 species 0 Stanieria cyanosphaera 1959 1323 1 2642663 no rank 0 1323 1 1807358 Stanieria sp. NIES-3757 0 species 943 1983111 1 no rank 0 943 718217 1 species 0 cyanobacterium endosymbiont of Epithemia turgida 1161 33 order 0 1 Nostocales 36286 46 1526 2 1892263 0 family 2 1190 1 0 genus Fischerella 1526 1 no rank 0 494603 1 1525 1 1752063 0 species Fischerella sp. NIES-3754 1525 18 1162 family 1 0 Nostocaceae 19837 32 genus 0 1 Anabaena 4 1163 23 4857 2 2619674 0 no rank 3716 1672 Anabaena sp. 90 species 0 46234 1 Anabaena sp. WA102 0 species 1647413 1 2044 1165 1 0 species Anabaena cylindrica 1118 9 2873 genus 0 1 Trichormus 264688 3 2050 1 1164 0 species Trichormus azollae 814 Trichormus variabilis species 0 264691 1 0 1 genus Nostoc 1177 10 83 12075 1209 Nostoc punctiforme species 0 272131 1 7 2593658 0 no rank 9305 922 317936 1 Nostoc sp. PCC 7107 species 0 1509 Nostoc sp. NIES-3756 species 0 1 1751286 1807 0 species Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1 1618022 1297 1869241 1 Nostoc sp. CENA543 species 0 0 species Nostoc sp. PCC 7524 1 28072 1012 1 103690 Nostoc sp. PCC 7120 0 species 654 1261031 1 0 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 2104 1478 Nostoc flagelliforme 0 species 1306274 1 10490 0 family 2661849 8 10490 48 8 1186 0 1 genus Calothrix 9460 0 no rank 2619626 6 Calothrix sp. NIES-2098 0 species 1954171 1 1471 1 1337936 species 0 Calothrix sp. 336/3 836 1 2005461 Calothrix sp. NIES-4101 0 species 1575 species 0 Calothrix sp. NIES-4071 2005469 1 3875 775 2005462 1 species 0 Calothrix sp. NIES-3974 928 0 species Calothrix sp. PCC 7507 1 99598 982 32054 1 Calothrix parietina species 0 28 3465 Rivulariaceae 1 0 family 3 1185 373984 2 Rivularia 1 0 genus 3437 12 3425 no rank 0 1 2676603 3425 0 species Rivularia sp. PCC 7116 373994 1 922 0 no rank 1219117 1 0 species Nostocales cyanobacterium HT-58-2 1940762 1 922 2363 22 6 307596 class 0 1 Gloeobacteria 5 307595 0 1 order Gloeobacterales 2341 51 16 2290 Gloeobacteraceae family 1 0 1890422 4 24 2274 Gloeobacter genus 1 0 3 33071 988 Gloeobacter kilaueensis species 0 1416614 1 1262 Gloeobacter violaceus species 0 33072 1 3 1890505 0 order 567 Chroococcidiopsidaceae 1 0 family 1890528 3 2 567 genus 0 1 Chroococcidiopsis 54298 2 2 565 563 54299 1 species 0 Chroococcidiopsis thermalis 252792 7 102 544448 Tenericutes phylum 1 0 2799557 2 no rank 0 8151 2 1912503 1 0 genus Candidatus Izimaplasma 8151 36 0 no rank 1 2624196 8115 8115 1 1541959 species 0 Candidatus Izimaplasma sp. HR1 97 31969 Mollicutes class 1 0 227723 168 103 109682 0 1 order Entomoplasmatales 186328 39 2131 24 family 1 0 Spiroplasmataceae 78172 149 23 2132 1 0 genus Spiroplasma 78023 2200 216933 1 Spiroplasma chrysopicola 0 species 2399 4928 1 216942 0 species Spiroplasma litorale 0 species Spiroplasma culicicola 1 216935 3763 6853 362837 1 0 species Spiroplasma cantharicola 5591 0 species Spiroplasma kunkelii 1 47834 2137 1 0 species Spiroplasma apis 2634 4681 0 species Spiroplasma citri 2133 1 3427 1 2145 Spiroplasma taiwanense 0 species 1 2144 species 0 Spiroplasma mirum 1852 4242 Spiroplasma diminutum 0 species 216936 1 2433 Spiroplasma corruscae species 0 216934 1 1903 1114980 1 species 0 Spiroplasma atrichopogonis 2806 0 species Spiroplasma sabaudiense 216944 1 216938 1 Spiroplasma helicoides species 0 3565 Spiroplasma eriocheiris 0 species 1 315358 2724 species 0 Spiroplasma turonicum 1 216946 3276 2637901 2 0 no rank 6918 3459 1898044 1 0 species Spiroplasma sp. TU-14 3459 0 species Spiroplasma sp. NBRC 100390 1914410 1 species 0 Spiroplasma monobiae 1 2136 2789 1704 Spiroplasma syrphidicola 0 species 1 216945 Spiroplasma floricola species 0 216937 1 4580 2755 Spiroplasma clarkii 0 species 1 2139 Entomoplasmataceae family 0 1 33925 14 121 31407 9848 27 46238 5 Entomoplasma 0 1 genus 215578 1 0 species Entomoplasma somnilux 2417 4446 81459 1 0 species Entomoplasma melaleucae 1 214888 Entomoplasma luminosum 0 species 1962 996 74700 1 Entomoplasma freundtii 0 species 46239 8 Mesoplasma genus 1 0 21438 557 1 225999 Mesoplasma syrphidae species 0 2577 2020 324078 1 Mesoplasma coleopterae 0 species 1842 species 0 Mesoplasma entomophilum 2149 1 0 species Mesoplasma lactucae 1 138853 5343 4987 2151 1 Mesoplasma florum 0 species 2376 216427 1 Mesoplasma chauliocola 0 species Mesoplasma tabanidae species 0 219745 1 1736 13 186329 0 1 order Acholeplasmatales 28973 79 238 28894 Acholeplasmataceae family 1 0 12 2146 320 8564 genus 1 0 Candidatus Phytoplasma 33926 6 4810 species group 0 85620 3 1 229545 0 species Aster yellows witches'-broom phytoplasma 1562 1140 1 202462 species 0 Maize bushy stunt phytoplasma 2108 0 species Onion yellows phytoplasma 100379 1 1512 species group 0 85632 1 1 59748 Candidatus Phytoplasma australiense species 0 1512 1 85630 0 species group 1922 Candidatus Phytoplasma mali 0 species 1 37692 1922 Acholeplasma genus 1 0 5 2147 191 20092 6076 Acholeplasma oculi 0 species 1 35623 1 61635 species 0 Acholeplasma brassicae 3435 2148 1 Acholeplasma laidlawii 0 species 4349 Acholeplasma palmae species 0 38986 1 6041 68 88900 0 1 order Mycoplasmatales 44 2085 2092 43 family 0 1 Mycoplasmataceae 88832 409 55610 1157 2093 27 Mycoplasma 0 1 genus 115 1 29501 0 species Mycoplasma haemofelis 3601 Mycoplasma penetrans species 0 28227 1 227 1 2104 species 0 Mycoplasma pneumoniae species 0 Mycoplasma canadense 29554 1 3180 Mycoplasma hyorhinis 0 species 2100 1 2676 2128 1 0 species Mycoplasma flocculare 1532 65123 1 species 0 Mycoplasma wenyonii 659 Mycoplasma hominis 0 species 2098 1 3921 species 0 Mycoplasma hyopneumoniae 1 2099 1994 196 1 171632 Mycoplasma ovis 0 species 636 Mycoplasma dispar species 0 1 86660 Mycoplasma crocodyli species 0 1 50052 1948 372 2097 1 species 0 Mycoplasma genitalium 16747 656088 3 species group 0 0 species Mycoplasma leachii 2105 1 4243 7609 Mycoplasma mycoides 0 species 1 2102 species 0 Mycoplasma capricolum 2095 1 4895 Mycoplasma arthritidis species 0 1 2111 1533 492 984991 1 Mycoplasma parvum 0 species 1339 1 45362 0 species Mycoplasma bovoculi Mycoplasma haemocanis 0 species 136241 1 221 Mycoplasma mobile species 0 2118 1 3119 species 0 Mycoplasma gallisepticum 1 2096 1103 0 species Mycoplasma suis 1 57372 1053 1657 Mycoplasma putrefaciens 0 species 2123 1 3091 1 2683645 no rank 0 species 0 Mycoplasma sp. (ex Biomphalaria glabrata) 1749074 1 3091 3041 1 51365 0 species Mycoplasma yeatsii 2767358 12 genus 0 26396 Mycoplasma fermentans 0 species 1 2115 2600 2381 0 species Mycoplasma agalactiae 1 2110 2503 1 29555 0 species Mycoplasma canis 0 species Mycoplasma pulmonis 1 2107 2345 species 0 Mycoplasma pullorum 1 48003 1918 1 171284 Mycoplasma cynos 0 species 2623 1068 0 species Mycoplasma californicum 2113 1 1533 Mycoplasma synoviae species 0 1 2109 4614 28903 1 0 species Mycoplasma bovis 1861 29553 1 species 0 Mycoplasma bovirhinis 1842 2094 1 0 species Mycoplasma arginini 1108 2112 1 Mycoplasma bovigenitalium species 0 6 6417 genus 0 1 Ureaplasma 3 2129 2331 1 134821 Ureaplasma parvum 0 species 1 2130 Ureaplasma urealyticum species 0 4080 16911 713063 2 no rank 0 8233 0 species Tenericutes bacterium MO-XQ 1911684 1 species 0 Tenericutes bacterium MZ-XQ 1911683 1 8678 747 11702520 1 0 phylum Firmicutes 730 1239 Bacilli 1 0 class 433 91061 452 1372366 731223 1288 266 1385 0 1 order Bacillales family 1 0 Thermoactinomycetaceae 4 186824 4 2129 89 2094 1 0 genus Novibacillus 1677050 2 2005 Novibacillus thermophilus species 0 1 1471761 292635 1 0 genus Laceyella 31 12334 no rank 0 539002 9 0 no rank 539742 7 6238 6238 1093 7 33986 1 0 genus Exiguobacterium 2644629 4 0 no rank 3084 1004 1 360911 Exiguobacterium sp. AT1b species 0 559 species 0 Exiguobacterium sp. MH3 1 1399115 834 1224749 1 Exiguobacterium sp. ZWU0009 species 0 Exiguobacterium sp. U13-1 0 species 1 1849031 687 1248 Exiguobacterium sibiricum 0 species 332410 1 813 species 0 Exiguobacterium antarcticum 132920 1 6096 no rank 0 2 539738 1378 2 Gemella genus 0 1 6096 3 6093 no rank 0 1 2624949 6093 1 1785995 species 0 Gemella sp. oral taxon 928 186823 9 Alicyclobacillaceae family 1 0 10075 60 3 432330 genus 1 0 Tumebacillus 5057 46 species 0 Tumebacillus avium 1903704 1 3031 1980 1 1214604 Tumebacillus algifaecis species 0 2 29330 genus 1 0 Alicyclobacillus 2937 18 2919 405212 1 Alicyclobacillus acidocaldarius species 0 Kyrpidia 1 0 genus 1129704 3 43 2021 906 0 species Kyrpidia sp. EA-1 1 2055160 1072 species 0 Kyrpidia tusciae 1 33943 family 0 1 Listeriaceae 9 186820 68 25586 2755 2 Brochothrix genus 0 1 1884 6 1878 Brochothrix thermosphacta species 0 2756 1 Listeria 0 1 genus 1637 6 366 23634 Listeria innocua species 0 1 1642 3150 species 0 Listeria welshimeri 1643 1 2726 5538 1 1638 Listeria ivanovii species 0 Listeria seeligeri species 0 1640 1 2750 Listeria monocytogenes 0 species 1639 1 9104 378 114027 Paenibacillaceae family 1 0 46 186822 7752 37 4 55080 genus 1 0 Brevibacillus 2201 1 1393 species 0 Brevibacillus brevis 4066 1 1465 Brevibacillus laterosporus 0 species 54913 1 0 species Brevibacillus formosus 1448 76632 2 0 1 genus Thermobacillus 3822 12 3810 377615 1 0 species Thermobacillus composti 4010 3 85151 no rank 0 4010 9 55079 3 1 0 genus Aneurinibacillus 1 2642329 0 no rank 1925 1 1450761 Aneurinibacillus sp. XH2 species 0 1925 2076 species 0 Aneurinibacillus soli 1 1500254 980 98065 genus 0 1 Paenibacillus 44249 36 3138 0 species group 2044880 1 3138 1 483937 0 species Paenibacillus riograndensis 1178515 1 species 0 Paenibacillus swuensis 1694 no rank 0 13 185978 33567 0 species Paenibacillus sp. FSL R7-0273 1536772 1 3194 2630 species 0 Paenibacillus sp. IHBB 10380 1566358 1 Paenibacillus sp. FSL R5-0912 0 species 1536771 1 3166 species 0 Paenibacillus sp. 32O-W 1 1695218 2428 1870819 1 Paenibacillus sp. BIHB4019 0 species 2477 1828 2069255 1 Paenibacillus sp. lzh-N1 species 0 species 0 Paenibacillus sp. FSL P4-0081 1 1536769 3203 species 0 Paenibacillus sp. FSL R7-0331 1536773 1 3171 2137 1 1536775 Paenibacillus sp. FSL H7-0737 0 species 1536774 1 species 0 Paenibacillus sp. FSL H7-0357 2823 2185 1536770 1 0 species Paenibacillus sp. FSL R5-0345 324057 1 Paenibacillus sp. JDR-2 species 0 2179 0 species Paenibacillus sp. Y412MC10 1 481743 2146 2295 1 1464 0 species Paenibacillus larvae Paenibacillus odorifer 0 species 189426 1 2777 1 1126833 Paenibacillus beijingensis species 0 2631 160799 1 Paenibacillus borealis species 0 3213 6548 1406 1 Paenibacillus polymyxa species 0 Paenibacillus naphthalenovorans species 0 1 162209 2231 1 1763538 0 species Paenibacillus crassostreae 3033 1 365617 species 0 Paenibacillus sabinae 2583 1616788 1 Paenibacillus bovis species 0 2958 species 0 Paenibacillus durus 44251 1 4073 3819 Paenibacillus stellifer 0 species 1 169760 3017 Paenibacillus donghaensis 0 species 1 414771 Paenibacillus xylanexedens species 0 1 528191 2594 1462996 1 0 species Paenibacillus yonginensis 2419 0 species Paenibacillus peoriae 1 59893 1450 1870820 1 species 0 Paenibacillus ihbetae 2338 2691 1 189425 Paenibacillus graminis 0 species 4476 Paenibacillus mucilaginosus 0 species 1 61624 172713 1 0 species Paenibacillus kribbensis 1689 1851 1 159743 Paenibacillus terrae 0 species 1 1502 Sporolactobacillaceae 0 1 family 186821 2 1 663587 0 no rank 1501 1501 species 0 [Bacillus] selenitireducens 1 85683 186818 26 Planococcaceae 1 0 family 46534 103 5 1569 1 0 genus Sporosarcina 11228 150 5488 1571 1 Sporosarcina ureae 0 species 2841 0 species Sporosarcina psychrophila 1476 1 no rank 0 2 2647733 2749 1323 Sporosarcina sp. P37 0 species 1930546 1 0 species Sporosarcina sp. P33 1930764 1 1426 2272 1 2 648802 Rummeliibacillus 0 1 genus 1 241244 Rummeliibacillus stabekisii 0 species 2271 1759 157226 1 0 genus 1759 1508404 1 Jeotgalibacillus malaysiensis 0 species 257 21561 genus 0 1 Planococcus 1372 12 2827 0 species Planococcus maritimus 192421 1 Planococcus sp. L10.15 0 species 1 1302659 1923 1130 1 200991 Planococcus rifietoensis 0 species 3483 2662419 2 0 no rank 2058136 1 Planococcus sp. MB-3u-03 species 0 1072 1 1526927 Planococcus sp. PAMC 21323 species 0 2411 3339 1 414778 Planococcus donghaensis 0 species 161360 1 Planococcus antarcticus 0 species 1259 2134 1 1215089 species 0 Planococcus halocryophilus 1 1374 0 species Planococcus kocurii 2034 0 species Planococcus faecalis 1 1598147 2209 species 0 Planococcus plakortidis 1038856 1 966 5311 5 3 648800 Solibacillus 1 0 genus 2876 0 species Solibacillus silvestris 76853 1 2430 no rank 0 2637870 1 2430 species 0 Solibacillus sp. R5-41 2048654 1 161 4300 Kurthia genus 0 1 1649 2 1 2644826 no rank 0 4139 4139 1 1750719 Kurthia sp. 11kri321 0 species Staphylococcaceae family 1 0 41 90964 4754 158120 genus 0 1 Macrococcus 4 69965 124 11253 4689 no rank 0 2619255 1 4689 1 1898474 Macrococcus sp. IME1552 0 species 3737 69966 1 0 species Macrococcus caseolyticus 2703 0 species Macrococcus canis 1 1855823 1922 136955 Staphylococcus 1 0 genus 33 1279 species 0 Staphylococcus stepanovicii 1 643214 5468 3815 no rank 0 91994 1 Staphylococcus sp. AntiMn-1 0 species 1715860 1 3815 3314 Staphylococcus kloosii species 0 1 29384 species 0 Staphylococcus simiae 1 308354 5491 0 species Staphylococcus condimenti 70255 1 2465 3093 1 1286 0 species Staphylococcus simulans 1841 1294 1 0 species Staphylococcus muscae 1281 1 Staphylococcus carnosus 0 species 3510 2370 1 46127 species 0 Staphylococcus felis 2711 species 0 Staphylococcus schleiferi 1 1295 1338 Staphylococcus lutrae 0 species 1 155085 4884 1292 1 0 species Staphylococcus warneri 1296 1 0 species Staphylococcus sciuri 5030 5297 1 28035 0 species Staphylococcus lugdunensis 29385 1 Staphylococcus saprophyticus species 0 3949 9768 Staphylococcus pasteuri species 0 1 45972 3658 29388 1 Staphylococcus capitis species 0 0 species Staphylococcus equorum 246432 1 4801 1282 1 0 species Staphylococcus epidermidis 7217 1 61015 species 0 Staphylococcus succinus 3860 2782 70258 1 species 0 Staphylococcus piscifermentans 29382 1 species 0 Staphylococcus cohnii 3659 4679 species 0 Staphylococcus haemolyticus 1283 1 2920 214473 1 Staphylococcus nepalensis species 0 13247 species 0 Staphylococcus aureus 1280 1 4128 1 985002 Staphylococcus argenteus species 0 1 1288 Staphylococcus xylosus species 0 6128 933 170573 1 Staphylococcus pettenkoferi species 0 0 species Staphylococcus hominis 1 1290 3763 0 species Staphylococcus agnetis 1 985762 3025 species 0 Staphylococcus pseudintermedius 283734 1 3272 Staphylococcus hyicus 0 species 1 1284 2617 1502 1 2 45669 genus 1 0 Salinicoccus 1501 species 0 Salinicoccus halodurans 1 407035 0 genus 2005363 1 3656 1 1849491 Auricoccus indicus 0 species 3656 Bacillaceae family 1 0 186817 119 937 359628 2324 7 2 1906945 genus 1 0 Parageobacillus 1426 1 Parageobacillus thermoglucosidasius species 0 2317 3 1329200 Fictibacillus genus 0 1 6245 21 3503 Fictibacillus arsenicus 0 species 255247 1 1221500 1 species 0 Fictibacillus phosphorivorans 2721 2 351195 genus 1 0 Salimicrobium 1248 1 1230341 1 Salimicrobium jeotgali species 0 1247 1 0 genus Bacillus 1386 58 8501 224638 Bacillus aryabhattai 0 species 412384 1 3037 1 86664 Bacillus flexus 0 species 2138 2864 Bacillus smithii 0 species 1 1479 26895 0 species group 653685 9 2548 species 0 Bacillus atrophaeus 1 1452 2210 0 species Bacillus paralicheniformis 1 1648923 1 119858 Bacillus sonorensis species 0 2138 9348 Bacillus subtilis 0 species 1 1423 3 1938374 species subgroup 0 7763 809 0 species Bacillus siamensis 659243 1 Bacillus amyloliquefaciens species 0 1390 1 3772 3182 1 492670 species 0 Bacillus velezensis 322 Bacillus vallismortis 0 species 1 72361 1 1402 Bacillus licheniformis 0 species 2566 Bacillus cohnii species 0 1 33932 6517 Bacillus glycinifermentans species 0 1664069 1 2031 Bacillus pumilus 0 species 1408 1 9185 0 species Bacillus weihaiensis 1 1547283 4329 92555 86661 10 0 species group 1 1396 0 species Bacillus cereus 30524 Bacillus cytotoxicus 0 species 580165 1 4358 11951 1405 1 Bacillus mycoides species 0 28130 species 0 Bacillus thuringiensis 1 1428 1 155322 0 species Bacillus toyonensis 2818 Bacillus anthracis 0 species 1 1392 2063 2923 658666 1 species 0 Bacillus bombysepticus 9788 0 no rank 3 2750818 2867 0 species Bacillus sp. HBCD-sjtu 2053832 1 Bacillus sp. FDAARGOS_235 species 0 1 1839798 4484 1892404 1 0 species Bacillus sp. ABP14 2437 24935 185979 19 0 no rank 1652 Bacillus sp. WP8 species 0 756828 1 1 1827146 species 0 Bacillus sp. IHB B 7164 3512 581 2009331 1 Bacillus sp. MD-5 0 species 536 species 0 Bacillus sp. YP1 1574141 1 935 1 1774743 Bacillus sp. SDLI1 0 species 227 species 0 Bacillus sp. BH072 1 1570330 Bacillus sp. FJAT-14266 species 0 1837130 1 1352 species 0 Bacillus sp. LM 4-2 1 1628753 311 270 0 species Bacillus sp. (in: Bacteria) 1 1409 4035 1 1565991 Bacillus sp. X1(2014) species 0 Bacillus sp. Lzh-5 0 species 2049935 1 183 1 1941347 Bacillus sp. 275 species 0 498 Bacillus sp. H15-1 species 0 1 1856406 1871 480 Bacillus sp. SJ-10 0 species 563169 1 1 1446792 species 0 Bacillus sp. Pc3 647 2026248 1 0 species Bacillus sp. 1s-1 1870 472 1127744 1 0 species Bacillus sp. JS 0 species Bacillus sp. OxB-1 1 98228 1231 4272 666686 1 0 species Bacillus sp. 1NLA3E 1 1398 species 0 Bacillus coagulans 5060 4934 135735 1 0 species Bacillus endophyticus 1166 1 632773 Bacillus beveridgei species 0 2255 1 1471 species 0 Bacillus methanolicus 1 1178537 0 species Bacillus xiamenensis 1914 324767 1 Bacillus infantis 0 species 1738 species 0 Bacillus safensis 561879 1 3414 1404 1 0 species Bacillus megaterium 8458 2910 79883 1 Bacillus horikoshii 0 species 1 79881 0 species Bacillus gibsonii 242 6804 1 1413 Bacillus cellulosilyticus 0 species 2756 1 1792192 0 species group 0 species Bacillus altitudinis 1 293387 2756 0 genus 459532 1 3232 3232 Terribacillus aidingensis 0 species 586416 1 Halobacillus 1 0 genus 45667 3 10 3977 2181 1 1570 Halobacillus halophilus 0 species 1786 Halobacillus mangrovi 0 species 1 402384 8 1949 0 1 genus Lentibacillus 175304 2 1941 1472767 1 species 0 Lentibacillus amyloliquefaciens Lysinibacillus genus 0 1 400634 5 104 20728 0 no rank 2636778 1 3100 3100 2072025 1 Lysinibacillus sp. YS11 0 species 4206 28031 1 species 0 Lysinibacillus fusiformis 3444 Lysinibacillus varians 0 species 1145276 1 1421 1 Lysinibacillus sphaericus 0 species 9874 29331 1 0 genus 5210 5210 1449 1 Amphibacillus xylanus 0 species Aeribacillus genus 0 1 1055323 2 2 2178 2176 1 33936 0 species Aeribacillus pallidus 15 129337 1 0 genus Geobacillus 17015 900 4 1505648 species group 0 4438 0 species Geobacillus thermocatenulatus 33938 1 1010 529 1462 1 species 0 Geobacillus kaustophilus 1 33941 species 0 Geobacillus thermoleovorans 1857 1042 Geobacillus lituanicus species 0 169283 1 1253 species 0 Geobacillus subterraneus 1 129338 0 no rank 2642459 6 6955 2121 Geobacillus sp. Y4.1MC1 0 species 1 581103 0 species Geobacillus sp. Y412MC52 1 550542 479 0 species Geobacillus sp. WCH70 1 471223 2641 636 species 0 Geobacillus sp. C56-T3 691437 1 492 Geobacillus sp. Y412MC61 species 0 1 544556 586 1 1233873 species 0 Geobacillus sp. GHH01 species 0 Geobacillus thermodenitrificans 33940 1 1272 species 0 Geobacillus genomosp. 3 1921421 1 892 1422 1 Geobacillus stearothermophilus 0 species 1305 6 150247 0 1 genus Anoxybacillus 12129 36 5390 0 no rank 2639704 2 2798 1 1490057 Anoxybacillus sp. B7M1 species 0 Anoxybacillus sp. B2M1 species 0 1490052 1 2592 33934 1 0 species Anoxybacillus flavithermus 3255 0 species Anoxybacillus amylolyticus 1 294699 1590 Anoxybacillus gonensis species 0 198467 1 1858 84406 7 Virgibacillus genus 1 0 23556 295 species 0 Virgibacillus phasianinus 2017483 1 3630 6298 0 no rank 2620237 2 2994 1 403957 Virgibacillus sp. SK37 0 species Virgibacillus sp. 6R 0 species 1911587 1 3304 3938 1 1482 0 species Virgibacillus halodenitrificans 3441 0 species Virgibacillus necropolis 163877 1 species 0 Virgibacillus pantothenticus 1 1473 5954 7381 2 2675230 genus 0 Bacillus kochii species 0 859143 1 4146 3235 1 665099 Bacillus oceanisediminis 0 species 6203 1 2 182709 genus 0 1 Oceanobacillus 6202 Oceanobacillus iheyensis 0 species 1 182710 genus 0 2675234 5 13141 1 300825 species 0 Bacillus lehensis 2543 Bacillus krulwichiae species 0 199441 1 4027 854 species 0 Bacillus halodurans 1 86665 species 0 Bacillus clausii 79880 1 3183 2534 Bacillus pseudofirmus 0 species 79885 1 7537 genus 0 2675229 2 1 264697 Bacillus muralis 0 species 1400 6137 Bacillus simplex 0 species 1 1478 1 0 order Lactobacillales 166 186826 7323 640691 0 no rank 263855 1 3414 0 species Lactobacillales bacterium 1993866 1 3414 44 22182 family 1 0 Leuconostocaceae 18 81850 2 46254 Oenococcus 1 0 genus 1874 1 1873 Oenococcus oeni 0 species 1 1247 6863 33 46255 6 0 1 genus Weissella 1500 0 species Weissella ceti 1 759620 1 165096 species 0 Weissella koreensis 1249 137591 1 0 species Weissella cibaria 839 species 0 Weissella jogaejeotgali 1631871 1 958 2284 Weissella paramesenteroides species 0 1249 1 9 1243 Leuconostoc genus 1 0 13401 244 1724 0 species Leuconostoc kimchii 136609 1 628 255248 1 Leuconostoc garlicum species 0 Leuconostoc lactis species 0 1246 1 567 2733 Leuconostoc gelidum species 0 1 1244 2685106 1 no rank 0 1808 1808 1 979982 Leuconostoc sp. C2 0 species 2728 Leuconostoc mesenteroides 0 species 1 1245 1669 0 species Leuconostoc citreum 1 33964 1300 1252 1 0 species Leuconostoc carnosum 15 12742 Aerococcaceae family 0 1 8 186827 12727 454 1375 7 1 0 genus Aerococcus 87541 1 Aerococcus christensenii species 0 1885 1589 1 128944 species 0 Aerococcus urinaehominis 1377 1 Aerococcus viridans 0 species 2593 3140 Aerococcus urinaeequi 0 species 1 51665 119206 1 Aerococcus sanguinicola 0 species 1214 1852 1 1376 Aerococcus urinae species 0 28802 57 186828 11 0 1 family Carnobacteriaceae 15556 101 2747 5 Carnobacterium genus 0 1 6380 no rank 0 257487 2 208596 1 species 0 Carnobacterium sp. 17-4 3381 1 1564681 0 species Carnobacterium sp. CP1 2999 0 species Carnobacterium maltaromaticum 1 2751 5424 3651 1 147709 species 0 Carnobacterium inhibens 2 191769 Marinilactibacillus 1 0 genus 6327 38 6289 0 no rank 2632303 1 Marinilactibacillus sp. 15R species 0 1911586 1 6289 6862 26 1470540 3 Jeotgalibaca 0 1 genus Jeotgalibaca dankookensis 0 species 1 708126 3069 3767 no rank 0 2621505 1 1 1903686 0 species Jeotgalibaca sp. PTS2502 3767 20 81852 0 1 family Enterococcaceae 105577 63 5787 3 33969 2 Melissococcus genus 0 1 33970 1 species 0 Melissococcus plutonius 5784 51668 2 genus 1 0 Tetragenococcus 6677 16 51669 1 0 species Tetragenococcus halophilus 6661 genus 1 0 Enterococcus 1350 12 4255 85087 Enterococcus faecalis 0 species 1 1351 15698 1 37734 Enterococcus casseliflavus 0 species 1506 2988 Enterococcus wangshanyuanii species 0 1 2005703 39197 0 species Enterococcus faecium 1352 1 Enterococcus hirae species 0 1354 1 3762 53345 1 0 species Enterococcus durans 4923 Enterococcus thailandicus 0 species 417368 1 3271 Enterococcus mundtii species 0 53346 1 3640 no rank 0 2608891 3 5847 1762 2057791 1 Enterococcus sp. CR-Ec1 0 species 1789 2060306 1 Enterococcus sp. FDAARGOS_163 0 species species 0 Enterococcus sp. FDAARGOS_375 1 2060307 2296 3 2737 Vagococcus 0 1 genus 7963 59 2913 1 633807 species 0 Vagococcus penaei species 0 Vagococcus teuberi 1 519472 4991 3295 321489 Streptococcaceae family 0 1 49 1300 genus 0 1 Lactococcus 1357 5 49 17527 2293 1363 1 Lactococcus garvieae species 0 1938 species 0 Lactococcus piscium 1364 1 1390 0 species Lactococcus raffinolactis 1366 1 1 1358 0 species Lactococcus lactis 11857 43 1301 1 0 genus Streptococcus 300667 8611 2639 Streptococcus mutans 0 species 1 1309 1 1308 Streptococcus thermophilus 0 species 4204 Streptococcus pantholopis 0 species 1 1811193 1393 13857 0 species Streptococcus parauberis 1 1348 Streptococcus lutetiensis 0 species 1 150055 5965 Streptococcus pluranimalium species 0 82348 1 1319 1 1302 Streptococcus gordonii species 0 3761 1314 1 1814128 species 0 Streptococcus halotolerans 2 119603 species group 0 4664 1334 1 species 0 Streptococcus dysgalactiae 1691 1 1336 0 species Streptococcus equi 2973 species group 0 3 671232 76106 0 species Streptococcus constellatus 1 76860 13799 3431 1338 1 Streptococcus intermedius species 0 58876 Streptococcus anginosus 0 species 1328 1 1 1318 species 0 Streptococcus parasanguinis 1827 Streptococcus pneumoniae species 0 1313 1 5456 4720 species 0 Streptococcus salivarius 1 1304 1 315405 Streptococcus gallolyticus species 0 4635 species 0 Streptococcus pasteurianus 1 197614 4721 38564 1 1307 0 species Streptococcus suis 1611 1 1305 Streptococcus sanguinis species 0 7043 Streptococcus pyogenes species 0 1 1314 species 0 Streptococcus mitis 1 28037 4644 1747 1825069 1 Streptococcus marmotae species 0 8282 species 0 Streptococcus infantarius 102684 1 Streptococcus acidominimus 0 species 1 1326 2679 0 species Streptococcus merionis 400065 1 1384 1969 1 257758 0 species Streptococcus pseudopneumoniae 888 Streptococcus himalayensis 0 species 1888195 1 1 1349 species 0 Streptococcus uberis 2232 1376 Streptococcus equinus 0 species 1 1335 50402 Streptococcus agalactiae species 0 1311 1 2608887 7 0 no rank 18878 1 1156433 0 species Streptococcus sp. I-P16 5037 1326 0 species Streptococcus sp. oral taxon 431 712633 1 1511 species 0 Streptococcus sp. FDAARGOS_192 1 1839799 2214 Streptococcus sp. 'group B' 0 species 1319 1 4896 0 species Streptococcus sp. I-G2 1 1156431 species 0 Streptococcus sp. A12 1759399 1 2125 species 0 Streptococcus sp. NPS 308 1 1902136 1769 8562 Streptococcus oralis 0 species 1303 1 species 0 Streptococcus iniae 1346 1 2456 0 species Streptococcus cristatus 1 45634 1347 1411 1 59310 0 species Streptococcus macedonicus 485 139162 Lactobacillaceae 1 0 family 58 33958 23295 6 2767879 genus 0 4483 1 392416 0 species Lactobacillus crustorum 3292 0 species Lactobacillus alimentarius 1602 1 1 1847728 0 species Lactobacillus allii 4449 Lactobacillus heilongjiangensis 0 species 1074467 1 3498 2739 species 0 Lactobacillus ginsenosidimutans 1 1007676 1612 1 0 species Lactobacillus farciminis 4834 4 2767887 0 genus 20939 11819 1 1624 Lactobacillus salivarius 0 species 1601 Lactobacillus acidipiscis species 0 1 89059 5204 Lactobacillus ruminis 0 species 1 1623 Lactobacillus agilis 0 species 1601 1 2315 1635 genus 0 2767877 1 148814 1 species 0 Lactobacillus kunkeei 1635 10839 23 1253 6 Pediococcus 1 0 genus 187452 1 species 0 Pediococcus claussenii 2249 0 species Pediococcus damnosus 51663 1 2549 114090 1 species 0 Pediococcus inopinatus 1217 1865 1670797 1 species group 0 1 1254 0 species Pediococcus acidilactici 1865 1255 1 0 species Pediococcus pentosaceus 2936 1578 16 Lactobacillus genus 0 1 38798 3606 1 1579 species 0 Lactobacillus acidophilus 1850 1144 1 83683 species 0 Lactobacillus amylolyticus 267818 1 species 0 Lactobacillus kefiranofaciens 1193 1 1596 0 species Lactobacillus gasseri 4633 1385 52242 1 Lactobacillus gallinarum 0 species 1520 1600 1 0 species Lactobacillus acetotolerans 5130 2620435 4 no rank 0 Lactobacillus sp. wkB8 0 species 1545702 1 2858 2099788 1 species 0 Lactobacillus sp. CBA3605 1049 662 1 2099789 Lactobacillus sp. CBA3606 species 0 1 2108362 Lactobacillus sp. D1501 species 0 561 2689 species 0 Lactobacillus jensenii 109790 1 Lactobacillus delbrueckii 0 species 1584 1 3186 2684 1587 1 species 0 Lactobacillus helveticus 5700 33959 1 species 0 Lactobacillus johnsonii 1 1604 0 species Lactobacillus amylovorus 4078 3634 2767889 2 0 genus 1610 1 0 species Lactobacillus coryniformis 2080 1554 Lactobacillus backii 0 species 1 375175 2 2767885 genus 0 4407 species 0 Lactobacillus sakei 1599 1 2698 28038 1 Lactobacillus curvatus species 0 1709 genus 0 3 2742598 5733 1 1613 Lactobacillus fermentum 0 species 815 895 97478 1 0 species Lactobacillus mucosae 1598 1 Lactobacillus reuteri species 0 4023 919 1 2767892 genus 0 1 240427 0 species Lactobacillus paracollinoides 919 2759736 3 genus 0 4584 1582 1 Lactobacillus casei 0 species 1926 species 0 Lactobacillus paracasei 1 1597 1272 47715 1 Lactobacillus rhamnosus species 0 1386 7105 genus 0 2 2767881 1 53444 species 0 Lactobacillus lindneri 4122 species 0 Lactobacillus sanfranciscensis 1 1625 2983 2153 0 genus 2767886 3 Lactobacillus brevis species 0 1 1580 1048 Lactobacillus zymae species 0 1 267363 554 551 0 species Lactobacillus koreensis 1 637971 0 genus 3 2767842 3534 473 Lactobacillus paraplantarum species 0 1 60520 2225 1 1590 Lactobacillus plantarum species 0 836 1589 1 0 species Lactobacillus pentosus 5562 1 2767876 0 genus 5562 1603 1 species 0 Lactobacillus amylophilus 2767890 1 0 genus 2315 2315 Lactobacillus hokkaidonensis species 0 1193095 1 0 genus 2767893 3 3225 781 Lactobacillus parabuchneri 0 species 152331 1 829 Lactobacillus buchneri 0 species 1 1581 1 1138822 0 species Lactobacillus curieae 1615 31 909932 Negativicutes class 0 1 176330 81 1843488 5 0 1 order Acidaminococcales 24963 89 family 1 0 Acidaminococcaceae 4 909930 57 24874 3 904 0 1 genus Acidaminococcus 24817 120 16714 Acidaminococcus intestini species 0 187327 1 0 species Acidaminococcus fermentans 905 1 7983 1181 36524 Veillonellales 0 1 order 1843489 11 family 0 1 Veillonellaceae 10 31977 1370 35343 6889 42 2 39948 Dialister genus 1 0 Dialister pneumosintes species 0 39950 1 6847 2823 15 2 909928 genus 1 0 Negativicoccus 2808 Negativicoccus massiliensis species 0 1 1702287 13663 1205 2 906 genus 0 1 Megasphaera 12458 species 0 Megasphaera elsdenii 1 907 Veillonella genus 0 1 29465 3 47 10598 1 29466 0 species Veillonella parvula 6184 species 0 Veillonella rodentium 1 248315 4367 Selenomonadales 1 0 order 909929 14 196 114762 103931 186 9 1843491 Selenomonadaceae family 0 1 158846 2 0 1 genus Megamonas 74989 6 0 species Megamonas hypermegale 1 158847 74983 28756 282 970 6 genus 0 1 Selenomonas 5643 0 species Selenomonas sputigena 69823 1 Selenomonas ruminantium species 0 1 971 8776 14055 0 no rank 2637378 3 Selenomonas sp. oral taxon 478 0 species 1 712538 4568 713030 1 Selenomonas sp. oral taxon 136 species 0 5116 1884263 1 species 0 Selenomonas sp. oral taxon 920 4371 family 1 0 Sporomusaceae 4 1843490 44 10635 13 10591 0 1 genus Pelosinus 365348 3 5306 1 2629460 no rank 0 species 0 Pelosinus sp. UFO1 1 484770 5306 5272 Pelosinus fermentans 0 species 1 365349 class 0 1 Tissierellia 1737404 19 42 102026 95826 529 16 1737405 order 1 0 Tissierellales 3 2042895 family 1 0 Gottschalkiaceae 21222 14 21208 80 2 1505664 Gottschalkia 0 1 genus 1556 1 Gottschalkia acidurici species 0 21128 family 1 0 Peptoniphilaceae 12 1570339 13206 74075 20 5317 Peptoniphilus genus 1 0 2 162289 0 no rank 2637196 1 5297 5297 1912856 1 species 0 Peptoniphilus sp. ING2-D1G 12 15898 Murdochiella genus 0 1 1161127 2 15886 Murdochiella vaginalis 0 species 1 1852373 2 543311 Parvimonas genus 0 1 14188 181 14007 0 species Parvimonas micra 33033 1 2 150022 Finegoldia 0 1 genus 11872 171 Finegoldia magna species 0 1 1260 11701 13594 90 3 165779 genus 0 1 Anaerococcus 6404 Anaerococcus prevotii species 0 1 33034 1870984 1 0 species Anaerococcus mediterraneensis 7100 6158 1737407 2 0 no rank 2 1582879 1 0 genus Ezakiella 6158 350 1852374 1 Ezakiella massiliensis species 0 5808 9982551 559 186801 227 1 0 class Clostridia Halanaerobiales 1 0 order 11 53433 11 23237 Halanaerobiaceae family 1 0 5 972 83 14223 2330 3 Halanaerobium genus 0 1 12196 504 1 2331 Halanaerobium praevalens species 0 5776 Halanaerobium hydrogeniformans 0 species 1 656519 5916 1944 1 32636 genus 0 Halothermothrix orenii 0 species 1 31909 1944 39 9003 family 0 1 Halobacteroidaceae 53434 5 3035 1 28186 2 1 0 genus Acetohalobium 3034 28187 1 Acetohalobium arabaticum 0 species 16 5929 1 0 genus Halobacteroides 42417 2 1 42422 0 species Halobacteroides halobius 5913 485256 4 Natranaerobiales order 0 1 3538 8 Natranaerobiaceae family 0 1 485255 3 16 3530 Natranaerobius genus 0 1 375928 2 46 3514 1 375929 0 species Natranaerobius thermophilus 3468 40 68295 order 0 1 Thermoanaerobacterales 129208 135 1 2242 family 0 1 Thermodesulfobiaceae 3 227387 genus 1 0 Thermodesulfobium 227388 2 6 2241 Thermodesulfobium narugense species 0 184064 1 2235 66387 243 186814 20 Thermoanaerobacteraceae 0 1 family 1989 285 2 140458 genus 1 0 Thermacetogenium 1704 species 0 Thermacetogenium phaeum 85874 1 2126 53353 1 0 genus Thermoanaerobacter 9 1754 6010 583357 1 Thermoanaerobacter mathranii species 0 5585 1 2325 Thermoanaerobacter kivui 0 species 496866 1 0 species Thermoanaerobacter pseudethanolicus 7581 Thermoanaerobacter brockii 0 species 1 29323 7580 12609 0 no rank 2636821 2 6264 1 399726 Thermoanaerobacter sp. X514 species 0 6345 Thermoanaerobacter sp. X513 species 0 573062 1 Thermoanaerobacter italicus species 0 108150 1 5726 6136 0 species Thermoanaerobacter wiegelii 46354 1 129957 2 genus 1 0 Carboxydothermus 2360 3 1 129958 Carboxydothermus hydrogenoformans species 0 2357 20 5367 Caldanaerobacter genus 1 0 249529 2 5347 Caldanaerobacter subterraneus species 0 1 911092 3075 0 no rank 42857 4 14 2007 Moorella 0 1 genus 44260 2 1 1525 species 0 Moorella thermoacetica 1993 5 1068 genus 1 0 Ammonifex 42837 2 1063 species 0 Ammonifex degensii 42838 1 6403 13 3 543372 family 0 1 Thermoanaerobacterales Family IV. Incertae Sedis 1 0 genus Mahella 2 252965 1 6390 6389 species 0 Mahella australiensis 1 252966 126 54041 family 0 1 Thermoanaerobacterales Family III. Incertae Sedis 13 543371 22 17871 Thermoanaerobacterium 1 0 genus 3 28895 10132 1 1517 0 species Thermoanaerobacterium thermosaccharolyticum species 0 Thermoanaerobacterium xylanolyticum 29329 1 7717 9 44000 Caldicellulosiruptor genus 0 1 36044 1162 0 species Caldicellulosiruptor owensensis 55205 1 3730 1 717609 Caldicellulosiruptor obsidiansis 0 species 4695 Caldicellulosiruptor hydrothermalis species 0 413888 1 4488 4121 413889 1 Caldicellulosiruptor kronotskyensis species 0 5765 1 44001 Caldicellulosiruptor saccharolyticus 0 species 4141 1 52766 Caldicellulosiruptor lactoaceticus 0 species Caldicellulosiruptor kristjanssonii 0 species 1 52765 3880 4062 Caldicellulosiruptor bescii species 0 31899 1 Clostridiales order 1 0 186802 167 29857 9819879 1931 307060 Peptostreptococcaceae 0 1 family 12 186804 1411023 1 0 no rank 10462 10462 1 2081703 0 species Peptostreptococcaceae bacterium oral taxon 929 Acetoanaerobium genus 1 0 2 186831 13 8001 1 1511 Acetoanaerobium sticklandii 0 species 7988 2 44259 genus 1 0 Filifactor 5444 13 5431 1 143361 Filifactor alocis 0 species genus 0 1 Peptoclostridium 2 1481960 13 3976 1731 1 0 species Peptoclostridium acidaminophilum 3963 250465 868 2 1870884 0 1 genus Clostridioides 249597 1 1496 Clostridioides difficile species 0 26781 42 2 1849828 Paeniclostridium genus 0 1 26739 1 1505 0 species Paeniclostridium sordellii 26676 136 5 186806 0 1 family Eubacteriaceae 1 0 genus Acetobacterium 33951 2 15 3960 3945 33952 1 Acetobacterium woodii 0 species 1451 22580 genus 1 0 Eubacterium 2 1730 1 1736 species 0 Eubacterium limosum 21129 216572 3 Oscillospiraceae family 0 1 47082 16 genus 1 0 Oscillibacter 2 459786 90 47066 1 351091 species 0 Oscillibacter valericigenes 46976 0 1 family Christensenellaceae 3 990719 169 79923 811 79754 genus 1 0 Christensenella 2 990721 Christensenella massiliensis 0 species 1 1805714 78943 2202 1 68298 5 Syntrophomonadaceae 1 0 family 1515 2 2 862 genus 1 0 Syntrophomonas 1513 1 863 Syntrophomonas wolfei species 0 0 1 genus Syntrophothermus 2 129001 9 686 Syntrophothermus lipocalidus 0 species 1 86170 677 2304686 12 family 0 138096 11688 1 2304693 0 genus 11688 [Clostridium] thermosuccinogenes 0 species 84032 1 Ruminiclostridium genus 1 0 1508657 2 1253 11500 10247 species 0 [Clostridium] cellulolyticum 1521 1 22 10149 Fastidiosipila 0 1 genus 236752 2 10127 236753 1 Fastidiosipila sanguinis species 0 7660 14 2 1637257 Mageeibacillus 1 0 genus Mageeibacillus indolicus 0 species 1 884684 7646 genus 0 2304691 1 7074 species 0 [Clostridium] stercorarium 1 1510 7074 41080 2304692 3 0 genus 0 species Ruminiclostridium thermocellum 1515 1 11928 [Clostridium] clariflavum 0 species 1 288965 16059 Herbivorax saccincola species 0 1 1677857 13093 48945 no rank 0 2305130 1 Ruminiclostridium sp. KB18 species 0 1 1834198 48945 4354 4337826 Lachnospiraceae 1 0 family 186803 27 4 1506553 1 0 genus Lachnoclostridium 142516 816 47553 no rank 0 2608895 1 47553 Lachnoclostridium sp. YL32 species 0 1834196 1 Lachnoclostridium phocaeense species 0 1 1871021 73889 20258 1 66219 species 0 Lachnoclostridium phytofermentans 10 11954 Herbinix 0 1 genus 2 1663717 11944 1 1679721 Herbinix luporum species 0 101 20596 Cellulosilyticum genus 0 1 698776 2 1 29360 species 0 Cellulosilyticum lentocellum 20495 38467 1 2719231 genus 0 38467 species 0 [Clostridium] saccharolyticum 84030 1 28050 1 genus 0 104077 104077 1 39485 [Eubacterium] eligens 0 species no rank 0 186928 2 2316615 2268725 species 0 [Eubacterium] rectale 1 39491 712991 1 Lachnospiraceae bacterium oral taxon 500 species 0 47890 Anaerostipes 0 1 genus 2 207244 676 350323 649756 1 species 0 Anaerostipes hadrus 349647 66 32353 Butyrivibrio 1 0 genus 3 830 15639 Butyrivibrio hungatei species 0 185008 1 Butyrivibrio proteoclasticus species 0 1 43305 16648 Blautia 1 0 genus 3 572511 150 229445 175770 Blautia hansenii species 0 1322 1 53525 no rank 0 2648079 1 53525 species 0 Blautia sp. YL58 1 1796616 194229 0 genus 2569097 1 194229 1 39488 [Eubacterium] hallii 0 species 2 841 Roseburia genus 1 0 727168 68 301301 1 Roseburia hominis 0 species 727100 155255 1 2719313 0 genus [Clostridium] bolteae species 0 208479 1 155255 25 10474 Anaerotignum 0 1 genus 2 2039240 10449 Anaerotignum propionicum species 0 28446 1 31979 41 family 0 1 Clostridiaceae 844004 1192 Candidatus Arthromitus 0 1 genus 4 49082 210 23794 0 no rank 2638829 3 23584 Candidatus Arthromitus sp. SFB-mouse-NL species 0 1 1508644 7585 1041504 1 species 0 Candidatus Arthromitus sp. SFB-rat-Yit 8367 Candidatus Arthromitus sp. SFB-mouse 0 species 49118 1 7632 genus 0 1 Geosporobacter 390805 2 3 9773 1424294 1 Geosporobacter ferrireducens species 0 9770 genus 1 0 Clostridium 30 1485 4359 792035 22219 0 species Clostridium argentinense 1 29341 species 0 Clostridium sporogenes 1509 1 22430 135451 Clostridium botulinum 0 species 1491 1 1497 1 species 0 Clostridium formicaceticum 9557 Clostridium saccharoperbutylacetonicum species 0 36745 1 29207 18884 Clostridium cochlearium 0 species 1494 1 26683 species 0 Clostridium bornimense 1216932 1 25939 Clostridium chauvoei 0 species 46867 1 32266 1501 1 Clostridium pasteurianum species 0 species 0 Clostridium autoethanogenum 1 84023 16027 1493 1 Clostridium cellulovorans species 0 15372 Clostridium perfringens 0 species 1 1502 37138 25700 0 species Clostridium taeniosporum 394958 1 1538 1 Clostridium ljungdahlii species 0 16740 1542 1 Clostridium novyi 0 species 23049 1 238834 species 0 Clostridium estertheticum 15288 27220 1513 1 0 species Clostridium tetani 15441 0 species Clostridium acetobutylicum 1488 1 10401 species 0 Clostridium aceticum 1 84022 Clostridium kluyveri species 0 1 1534 20587 species 0 Clostridium butyricum 1492 1 33558 23038 Clostridium scatologenes 0 species 1 1548 1519 1 Clostridium tyrobutyricum 0 species 13611 33531 Clostridium baratii 0 species 1561 1 Clostridium beijerinckii 0 species 1 1520 35610 1 217159 0 species Clostridium carboxidivorans 23081 2614128 2 no rank 0 54537 42813 Clostridium sp. SY8519 0 species 1042156 1 Clostridium sp. BNL1100 0 species 1 755731 11724 25111 169679 1 species 0 Clostridium saccharobutylicum 3 114627 genus 0 1 Alkaliphilus 16648 33 1 208226 Alkaliphilus metalliredigens species 0 10096 Alkaliphilus oremlandii species 0 461876 1 6519 1981033 1 0 genus Mordavella 562 221 64977 Peptococcaceae 1 0 family 29 186807 5 1562 genus 0 1 Desulfotomaculum 12057 144 1 59610 species 0 Desulfotomaculum reducens 3485 1699 1 1565 Desulfotomaculum nigrificans species 0 Desulfotomaculum ferrireducens species 0 1833852 1 2584 1 1564 Desulfotomaculum ruminis species 0 4145 Candidatus Desulforudis genus 0 1 2 471826 21 2257 2236 species 0 Candidatus Desulforudis audaxviator 1 471827 12247 260 5 36853 Desulfitobacterium 1 0 genus 2316 Desulfitobacterium dichloroeliminans 0 species 1 233055 2797 Desulfitobacterium dehalogenans 0 species 1 36854 4399 0 species Desulfitobacterium hafniense 1 49338 2475 142877 1 0 species Desulfitobacterium metallireducens genus 0 1 2282740 2867 2867 102134 1 Desulfotomaculum gibsoniae 0 species 51514 2 Dehalobacterium genus 0 1 6013 286 species 0 Dehalobacterium formicoaceticum 51515 1 5727 Thermincola genus 0 1 278993 2 4 2344 2340 Thermincola potens 0 species 863643 1 4 56112 Dehalobacter genus 1 0 9547 127 2978 55583 1 Dehalobacter restrictus 0 species 6442 0 no rank 2635733 2 3127 1 1147129 0 species Dehalobacter sp. DCA 1131462 1 species 0 Dehalobacter sp. CF 3315 genus 0 2282742 1 4127 4127 species 0 Desulfotomaculum acetoxidans 58138 1 20 3826 0 1 genus Syntrophobotulus 51196 2 51197 1 Syntrophobotulus glycolicus 0 species 3806 4 79206 Desulfosporosinus genus 1 0 9471 189 0 species Desulfosporosinus orientis 1 1563 3359 Desulfosporosinus meridiei 0 species 79209 1 3613 2310 1 885581 Desulfosporosinus acidiphilus species 0 3487699 1129 13 541000 Ruminococcaceae family 0 1 2439233 2230 216851 2 genus 1 0 Faecalibacterium 2437003 species 0 Faecalibacterium prausnitzii 1 853 366 902089 Ruminococcus genus 1 0 3 1263 Ruminococcus albus 0 species 1 1264 20327 1160721 1 Ruminococcus bicirculans 0 species 881396 2305133 1 0 no rank 15838 15838 1 1572656 0 species Ruminococcaceae bacterium CPB6 1890281 1 Herbivorax 0 genus 7 9784 0 no rank 1 552397 9784 [Clostridium] cellulosi 0 species 1 29343 17017 7 253238 2 genus 1 0 Ethanoligenens 17010 1 253239 Ethanoligenens harbinense 0 species 946234 2 Flavonifractor 1 0 genus 102602 213 species 0 Flavonifractor plautii 292800 1 102389 no rank 0 538999 10 444641 267934 2717089 1 0 genus Mordavella sp. Marseille-P3756 0 species 1 2086584 267934 3 539000 0 1 family Clostridiales Family XVII. Incertae Sedis 3293 9 73918 2 Thermaerobacter genus 0 1 3284 25 3259 0 species Thermaerobacter marianensis 73919 1 543314 4 family 0 1 Clostridiales Family XIII. Incertae Sedis 10985 27 2 86331 1 0 genus Mogibacterium 4764 40 species 0 Mogibacterium diversum 114527 1 4724 6194 species 0 [Eubacterium] sulci 143393 1 2 1392389 Intestinimonas genus 1 0 162429 826 1 1297617 species 0 Intestinimonas butyriciproducens 161603 4361 24 31984 3 family 0 1 Heliobacteriaceae 76 4337 genus 0 1 Heliobacterium 2 2697 4261 0 species Heliobacterium modesticaldum 35701 1 19 5475 Symbiobacteriaceae 1 0 family 3 543349 31 5456 Symbiobacterium genus 1 0 2 2733 Symbiobacterium thermophilum species 0 2734 1 5425 6130 order 0 2770089 4 family 0 2770092 2 4477 4477 3 2 499228 0 1 genus Tepidanaerobacter 4474 0 species Tepidanaerobacter acetatoxydans 499229 1 0 family 2 2770093 1653 1653 23 291988 2 genus 0 1 Thermosediminibacter Thermosediminibacter oceani 0 species 291990 1 1630 11 526524 Erysipelotrichia 1 0 class 58103 2 100 58101 order 1 0 Erysipelotrichales 526525 10 273 58001 family 0 1 Erysipelotrichaceae 9 128827 1 544447 no rank 0 22843 22843 Erysipelotrichaceae bacterium I46 0 species 1834207 1 1729679 2 Faecalibaculum genus 0 1 12159 26 Faecalibaculum rodentium species 0 1 1702221 12133 3 1647 genus 0 1 Erysipelothrix 10032 202 1514105 1 species 0 Erysipelothrix larvae 4860 Erysipelothrix rhusiopathiae 0 species 1648 1 4970 12694 32 191303 2 Turicibacter 1 0 genus 12662 no rank 0 1 2638206 1712675 1 Turicibacter sp. H121 species 0 12662 2126 22 5 1676648 Limnochordia 1 0 class 1676649 4 Limnochordales 0 1 order 2104 83 16 2021 Limnochordaceae family 0 1 3 1676650 Limnochorda 1 0 genus 1676651 2 24 2005 1981 0 species Limnochorda pilosa 1 1555112 3088 2 33974 no rank 0 35 3088 1 0 genus Ndongobacter 2 1930845 3053 1871025 1 Ndongobacter massiliensis 0 species 0 no rank 1 84086 5183 endosymbiont 'TC1' of Trimyema compressum species 0 243899 1 5183 114 955247 phylum 0 1 Actinobacteria 654 201174 1752188 4 0 no rank 1557 340 Actinobacteria bacterium IMCC26103 0 species 1848756 1 674 1 1848755 Actinobacteria bacterium IMCC26077 0 species 314 Actinobacteria bacterium IMCC25003 0 species 1848255 1 0 species Actinobacteria bacterium IMCC19121 1848754 1 229 2826 27 84995 6 Rubrobacteria 0 1 class Rubrobacterales 0 1 order 5 84996 47 2799 14 2752 Rubrobacteraceae family 0 1 4 84997 55 2738 Rubrobacter genus 0 1 3 42255 Rubrobacter xylanophilus species 0 1 49319 1392 Rubrobacter radiotolerans 0 species 42256 1 1291 4 1926 Acidimicrobiia 0 1 class 7 84992 26 1922 0 1 order Acidimicrobiales 84993 6 84994 3 family 1 0 Acidimicrobiaceae 375 45 4 330 genus 0 1 Acidimicrobium 53634 2 1 53635 Acidimicrobium ferrooxidans 0 species 326 family 0 2 2448023 1521 12 1521 Ilumatobacter 1 0 genus 682522 2 467094 1 0 species Ilumatobacter coccineus 1509 240082 878 33 84998 Coriobacteriia 0 1 class 132756 330 84999 14 Coriobacteriales 0 1 order Atopobiaceae 0 1 family 1643824 7 409 18537 251 16343 Olsenella genus 0 1 4 133925 species 0 Olsenella sp. Marseille-P2300 1805478 1 8022 3006 0 no rank 2638792 1 3006 species 0 Olsenella sp. oral taxon 807 712411 1 5064 Olsenella uli species 0 1 133926 genus 0 2767353 1 1784 0 species Atopobium parvulum 1382 1 1784 1 1380 1 genus 0 Atopobium 0 1 family Coriobacteriaceae 6 84107 1592 113889 no rank 0 84113 1 3719 1531429 1 0 species Coriobacteriaceae bacterium 68-1-3 3719 126 106150 genus 0 1 Collinsella 2 102106 74426 1 species 0 Collinsella aerofaciens 106024 2428 4 2 33870 0 1 genus Coriobacterium 2424 1 33871 Coriobacterium glomerans species 0 order 0 1 Eggerthellales 18 1643822 575 106448 105873 23230 1643826 17 1 0 family Eggerthellaceae Cryptobacterium 1 0 genus 2 84162 5 904 species 0 Cryptobacterium curtum 84163 1 899 79603 2 Denitrobacterium 0 1 genus 3440 8 3432 1 79604 Denitrobacterium detoxificans 0 species 7072 21 2 84108 Slackia 0 1 genus 7051 84110 1 Slackia heliotrinireducens species 0 3 84111 Eggerthella genus 0 1 29554 672 9556 no rank 0 1 2648737 9556 1 502558 species 0 Eggerthella sp. YY7918 species 0 Eggerthella lenta 1 84112 19326 Gordonibacter 0 1 genus 644652 3 123 19704 8490 0 species Gordonibacter massiliensis 1 1841863 1335613 1 Gordonibacter urolithinfaciens species 0 11091 10 19613 Adlercreutzia genus 1 0 447020 2 19603 Adlercreutzia equolifaciens 0 species 1 446660 2356 22 2 1981050 Phoenicibacter genus 0 1 species 0 Phoenicibacter massiliensis 1944646 1 2334 2578 9 1497346 5 Thermoleophilia 0 1 class 588673 4 Solirubrobacterales 1 0 order 2569 88 Conexibacteraceae 1 0 family 320583 3 23 2481 2458 51 191494 2 Conexibacter genus 0 1 191495 1 0 species Conexibacter woesei 2407 706164 5737 598 1760 Actinobacteria class 0 1 1080 138374 0 1 order Corynebacteriales 162 85007 Gordoniaceae family 1 0 85026 9 77 6078 222 6001 Gordonia 1 0 genus 2053 8 0 species Gordonia iterans 1 1004901 809 746 species 0 Gordonia phthalatica 1136941 1 831 0 species Gordonia polyisoprenivorans 84595 1 no rank 0 2 2657482 1741 2059875 1 species 0 Gordonia sp. YC-JH1 868 0 species Gordonia sp. KTR9 337191 1 873 1 2054 species 0 Gordonia bronchialis 656 996 species 0 Gordonia terrae 2055 1 692 0 family 2 316606 692 17 2 286801 Segniliparus 0 1 genus 675 286802 1 Segniliparus rotundus 0 species 43387 264 52 1653 Corynebacteriaceae family 0 1 1716 51 Corynebacterium 1 0 genus 43123 1010 0 species [Brevibacterium] flavum 1 92706 441 1231000 1 Corynebacterium lactis species 0 705 1 191493 0 species Corynebacterium sphenisci 1289 1 136857 Corynebacterium testudinoris 0 species 750 697 species 0 Corynebacterium glyciniphilum 1404244 1 1850 species 0 Corynebacterium ulcerans 65058 1 Corynebacterium flavescens species 0 1 28028 557 1 43770 Corynebacterium striatum species 0 1530 1304 349751 1 Corynebacterium marinum 0 species 975 1 156978 0 species Corynebacterium imitans 1 35757 species 0 Corynebacterium cystitidis 533 456 42817 1 Corynebacterium argentoratense species 0 765 Corynebacterium terpenotabidum species 0 1 89154 Corynebacterium glaucum 0 species 1 187491 814 161899 1 Corynebacterium singulare species 0 668 1550 1 38305 species 0 Corynebacterium vitaeruminis 1 160386 Corynebacterium casei 0 species 636 Corynebacterium urealyticum 0 species 43771 1 913 species 0 Corynebacterium maris 1 575200 845 1250 Corynebacterium frankenforstense species 0 1230998 1 2 2624378 no rank 0 1183 655 Corynebacterium sp. NML98-0116 0 species 702967 1 528 0 species Corynebacterium sp. ATCC 6931 1 1487956 35755 1 0 species Corynebacterium kutscheri 340 561 1408191 1 0 species Corynebacterium deserti 499 Corynebacterium mustelae 0 species 1 571915 203263 1 0 species Corynebacterium aquilae 761 1452 Corynebacterium jeikeium species 0 1 38289 Corynebacterium variabile 0 species 1727 1 1089 1127 Corynebacterium falsenii 0 species 1 108486 0 species Corynebacterium aurimucosum 169292 1 848 918 401472 1 Corynebacterium ureicelerivorans 0 species 981 Corynebacterium efficiens 0 species 152794 1 1478 1718 1 0 species Corynebacterium glutamicum 383 Corynebacterium resistens species 0 1 258224 610 0 species Corynebacterium camporealensis 1 161896 0 species Corynebacterium epidermidicanis 1 1050174 449 225326 1 Corynebacterium halotolerans 0 species 1364 0 species Corynebacterium simulans 146827 1 1004 552 1 1652495 species 0 Corynebacterium crudilactis Corynebacterium phocae 0 species 161895 1 775 497 0 species Corynebacterium stationis 1 1705 813 Corynebacterium atypicum species 0 1 191610 903 1121358 1 Corynebacterium doosanense species 0 481 1697 1 species 0 Corynebacterium ammoniagenes 1 1719 Corynebacterium pseudotuberculosis species 0 631 1 1223514 species 0 Corynebacterium humireducens 933 161879 1 0 species Corynebacterium kroppenstedtii 401 707 Corynebacterium diphtheriae 0 species 1717 1 Corynebacterium callunae 0 species 1 1721 852 1 1072256 Corynebacterium uterequi species 0 993 31 85025 1 0 family Nocardiaceae 33269 288 225 12697 Nocardia genus 1 0 1817 7 37329 1 Nocardia farcinica 0 species 1626 Nocardia brasiliensis species 0 37326 1 3158 1426 0 species Nocardia nova 37330 1 1925 species 0 Nocardia seriolae 37332 1 species 0 Nocardia terpenica 1 455432 1633 0 species Nocardia cyriacigeorgica 135487 1 2704 genus 1 0 Rhodococcus 23 1827 990 20284 858 species 0 Rhodococcus pyridinivorans 1 103816 1833 1 Rhodococcus erythropolis species 0 709 0 species Rhodococcus rhodochrous 1829 1 784 Rhodococcus opacus species 0 1 37919 2547 species 0 Rhodococcus hoagii 1 43767 944 Rhodococcus qingshengii species 0 334542 1 562 191292 1 0 species Rhodococcus aetherivorans 1373 species 0 Rhodococcus ruber 1 1830 1079 863 1 1828 species 0 Rhodococcus fascians 1043 1 132919 0 species Rhodococcus jostii 8532 0 no rank 12 192944 724 0 species Rhodococcus sp. PBTS 1 1 1653478 387 Rhodococcus sp. BH4 0 species 1807790 1 486 1723645 1 Rhodococcus sp. 008 species 0 506 0 species Rhodococcus sp. WMMA185 679318 1 776 1564114 1 species 0 Rhodococcus sp. B7740 480 species 0 Rhodococcus sp. YL-1 1 1045808 714 Rhodococcus sp. 2G 0 species 1 1570939 1805827 1 species 0 Rhodococcus sp. MTM3W5.2 1063 1366 1 1033922 Rhodococcus sp. WB1 species 0 1 935199 0 species Rhodococcus sp. p52 668 species 0 Rhodococcus sp. H-CA8f 1727214 1 701 661 Rhodococcus sp. PBTS 2 species 0 1 1653479 1 0 family Mycobacteriaceae 57 1762 158 48209 1763 34 Mycobacterium genus 0 1 27396 2308 0 species group 4 77643 1689 496 1302 1 0 species Mycobacterium tuberculosis 1773 3 408 Mycobacterium africanum biotype 0 1 33894 398 1 1765 biotype 0 Mycobacterium bovis 387 Mycobacterium canettii species 0 1 78331 886 1768 1 Mycobacterium kansasii 0 species species group 0 2249310 1 834 834 1 722731 0 species Mycobacterium shigaense 1 1809 Mycobacterium ulcerans 0 species 832 1129 0 species Mycobacterium dioxanotrophicus 1 482462 0 species Mycobacterium marinum 1781 1 943 1 1769 Mycobacterium leprae 0 species 232 763 1 261524 species 0 Mycobacterium liflandii 8 120793 species group 0 5536 249 species 0 Mycobacterium paraintracellulare 1138383 1 1855 1 1764 0 species Mycobacterium avium 712 0 species Mycobacterium marseillense 1 701042 1628 392 1767 4 species 0 1 Mycobacterium intracellulare subspecies 0 Mycobacterium chimaera 1 222805 731 0 subspecies Mycobacterium yongonense 1 1203599 325 1 35617 subspecies 0 Mycobacterium indicus pranii 180 1 339268 Mycobacterium colombiense 0 species 1092 no rank 0 2642494 13 11604 1 189918 Mycobacterium sp. KMS 0 species 863 1 1561223 species 0 Mycobacterium sp. QIA-37 587 257 species 0 Mycobacterium sp. MOTT36Y 1168287 1 Mycobacterium sp. JLS 0 species 164757 1 842 164756 1 0 species Mycobacterium sp. MCS 805 1073 1920667 1 species 0 Mycobacterium sp. WY10 1006 0 species Mycobacterium sp. PYR15 1 2051552 1273687 1 0 species Mycobacterium sp. VKM Ac-1817D 932 1312 Mycobacterium sp. djl-10 species 0 1879023 1 0 species Mycobacterium sp. EPa45 1545728 1 899 Mycobacterium sp. YC-RL4 0 species 1682113 1 1074 897 1 1570328 0 species Mycobacterium sp. NRRL B-3805 212767 1 Mycobacterium sp. JS623 0 species 1057 640 0 species Mycobacterium haemophilum 29311 1 1073531 2 0 genus 1707 species 0 Mycobacterium sinense 1 875328 890 817 species 0 Mycobacterium terrae 1 1788 14298 0 genus 1866885 13 1235 1 1804 0 species Mycobacterium gilvum 1 36814 0 species Mycobacterium rhodesiae 760 1050 1766 1 species 0 Mycobacterium fortuitum 1771 1 Mycobacterium phlei 0 species 1223 1470 species 0 Mycobacterium aurum 1 1791 1795 1 0 species Mycobacterium neoaurum 897 0 species Mycobacterium goodii 134601 1 1168 Mycobacterium thermoresistibile 0 species 1797 1 1075 923 0 species Mycobacterium vanbaalenii 1 110539 922 Mycobacterium chubuense species 0 1800 1 1 1810 species 0 Mycobacterium vaccae 1368 0 species Mycobacterium litorale 758802 1 975 1232 1772 1 0 species Mycobacterium smegmatis 572 2 2 697025 Hoyosella genus 0 1 species 0 Hoyosella subflava 1 639313 570 0 genus 5 670516 4078 83262 1 Mycobacterium immunogenum 0 species 713 707 1 1578165 Mycobacterium saopaulense 0 species 1525 Mycobacterium abscessus 0 species 1 36809 1774 1 species 0 Mycobacterium chelonae 429 704 species 0 Mycobacterium stephanolepidis 1 1520670 0 no rank 2 697024 1109 327 1109 Lawsonella 1 0 genus 1847725 2 782 0 species Lawsonella clevelandensis 1528099 1 85028 4 Tsukamurellaceae 0 1 family 2698 21 3 2060 0 1 genus Tsukamurella 2677 60 1633 57704 1 Tsukamurella tyrosinosolvens 0 species 984 2061 1 Tsukamurella paurometabola species 0 5 1852 Dietziaceae 0 1 family 4 85029 94 1847 genus 1 0 Dietzia 3 37914 785 1 499555 Dietzia timorensis species 0 968 0 no rank 1 2617939 Dietzia sp. oral taxon 368 species 0 712270 1 968 2 1128 Actinopolysporales 0 1 order 622450 4 1126 13 3 622451 0 1 family Actinopolysporaceae 1113 13 2 1849 genus 1 0 Actinopolyspora Actinopolyspora erythraea species 0 1 414996 1100 85009 33 Propionibacteriales order 1 0 28990 143 13 85015 Nocardioidaceae 0 1 family 10390 158 1783 18 2044 2 Pimelobacter 0 1 genus 0 species Pimelobacter simplex 1 2045 1765 Micropruina genus 0 1 2 116071 12 1384 1372 1 75385 Micropruina glycogenica species 0 19 1777 genus 1 0 Kribbella 182639 2 1758 Kribbella flavida species 0 1 182640 1069 24 2 2040 Aeromicrobium genus 1 0 Aeromicrobium erythreum species 0 2041 1 1045 4219 123 4 1839 Nocardioides 1 0 genus 2615069 1 0 no rank 1571 1571 Nocardioides sp. JS614 species 0 1 196162 0 species Nocardioides dokdonensis 1 450734 1253 1272 Nocardioides sp. 78 species 0 1 2045452 19 31957 Propionibacteriaceae family 0 1 18457 297 73 6108 1 0 genus Tessaracoccus 72763 5 1363 1610493 1 Tessaracoccus flavus 0 species 0 no rank 1 2635419 1374 1374 Tessaracoccus sp. T2.5-30 species 0 1909732 1 1687 1 1332264 Tessaracoccus aquimaris 0 species 1611 399497 1 Tessaracoccus flavescens species 0 1215 0 genus 1 2801844 0 species Pseudopropionibacterium propionicum 1 1750 1215 3174 37 3 1743 0 1 genus Propionibacterium Propionibacterium freudenreichii 0 species 1744 1 2284 853 no rank 0 2608905 1 853 671223 1 Propionibacterium sp. oral taxon 193 species 0 22 3137 Cutibacterium 1 0 genus 1912216 4 1203 1747 1 Cutibacterium acnes 0 species 688 33011 1 Cutibacterium granulosum 0 species species 0 Cutibacterium avidum 1 33010 1224 1550 0 genus 203133 1 1550 2633994 1 0 no rank 1550 species 0 Propionimicrobium sp. Marseille-P3275 1 1871034 2 29404 1 0 genus Microlunatus 1156 19 1137 species 0 Microlunatus phosphovorus 1 29405 2 1912215 genus 0 1 Acidipropionibacterium 1820 12 1808 1748 1 Acidipropionibacterium acidipropionici 0 species 4550 15 8 1643682 0 1 order Geodermatophilales 7 85030 0 1 family Geodermatophilaceae 4535 110 1518 26 2 1860 genus 1 0 Geodermatophilus 1492 Geodermatophilus obscurus 0 species 1 1861 1836 46 88138 2 0 1 genus Modestobacter 1 477641 0 species Modestobacter marinus 1790 10 1071 Blastococcus genus 1 0 2 38501 species 0 Blastococcus saxobsidens 1 138336 1061 20 2037 Actinomycetales 0 1 order 22135 36 22099 3257 2049 19 Actinomycetaceae 1 0 family Arcanobacterium genus 1 0 28263 2 1 834 833 28264 1 Arcanobacterium haemolyticum species 0 1654 9 Actinomyces genus 0 1 11106 249 Actinomyces oris species 0 1 544580 1377 Actinomyces sp. VUL4_3 0 species 1912795 1 394 species 0 Actinomyces pacaensis 1 1852377 1892 4641 3 2609248 0 no rank 1965 Actinomyces sp. oral taxon 414 0 species 1 712122 1512 Actinomyces sp. oral taxon 897 species 0 2081702 1 1164 Actinomyces sp. Chiba101 species 0 1 1851395 900 0 species Actinomyces gaoshouyii 1 1960083 1653 1 111015 species 0 Actinomyces radicidentis 999 genus 0 1 2529408 species 0 Actinomyces meyeri 52773 1 999 2453 13 2 1069494 Trueperella 1 0 genus 1661 1 Trueperella pyogenes species 0 2440 3 761 Actinotignum 0 1 genus 2 1653174 758 Actinotignum schaalii 0 species 59505 1 2689 122 2 2050 Mobiluncus genus 0 1 2567 0 species Mobiluncus curtisii 1 2051 85010 42 Pseudonocardiales 0 1 order 47927 129 47798 785 41 2070 Pseudonocardiaceae family 1 0 218 12148 genus 0 1 Amycolatopsis 7 1813 1812 Amycolatopsis methanolica 0 species 1 1814 2618356 2 0 no rank 3534 1995 species 0 Amycolatopsis sp. AA4 1 1896961 Amycolatopsis sp. BJA-103 species 0 1 1911175 1539 3043 1 31958 Amycolatopsis orientalis 0 species 1 33910 Amycolatopsis mediterranei species 0 2194 Amycolatopsis japonica 0 species 1 208439 1347 1835 2 Saccharopolyspora 1 0 genus 1926 4 Saccharopolyspora erythraea species 0 1 1836 1922 5 2118 0 1 genus Kutzneria 2 43356 2113 Kutzneria albida species 0 1 43357 2009 5 2029 2 1 0 genus Kibdelosporangium 2004 Kibdelosporangium phytohabitans species 0 860235 1 8 1847 Pseudonocardia genus 0 1 10088 317 240495 1 0 species Pseudonocardia dioxanivorans 1571 0 no rank 2619320 6 8200 0 species Pseudonocardia sp. HH130630-07 1 1690815 1388 1268 0 species Pseudonocardia sp. EC080625-04 1096868 1 1388 species 0 Pseudonocardia sp. EC080619-01 1096856 1 1641402 1 species 0 Pseudonocardia sp. HH130629-09 1193 1600 Pseudonocardia sp. AL041005-10 0 species 445576 1 1363 Pseudonocardia sp. EC080610-09 0 species 1 1688404 2 599 genus 0 1 Saccharomonospora 2 1851 1852 1 0 species Saccharomonospora viridis 597 100 4889 0 1 genus Actinosynnema 3 40566 2288 Actinosynnema mirum species 0 40567 1 42197 1 0 species Actinosynnema pretiosum 2501 674734 2 Alloactinosynnema genus 1 0 1576 12 1564 0 no rank 2636053 1 1 1653480 species 0 Alloactinosynnema sp. L-07 1564 1118 11 142577 2 Prauserella genus 0 1 1107 1 530584 Prauserella marina species 0 Lentzea genus 0 1 2 165301 6 2066 2060 1 1586287 species 0 Lentzea guizhouensis genus 1 0 Actinoalloteichus 65496 6 116 6371 964 1 340345 Actinoalloteichus hymeniacidonis species 0 1363 1612552 1 Actinoalloteichus sp. ADI127-7 0 species 2644606 2 no rank 0 2613 1308 0 species Actinoalloteichus sp. GBA129-24 1 1612551 1305 species 0 Actinoalloteichus sp. AHMU CJ021 1 2072503 Actinoalloteichus hoggarensis 0 species 1 1470176 1315 21 2105 Saccharothrix 1 0 genus 2 2071 Saccharothrix espanaensis 0 species 103731 1 2084 23556 51 85008 20 Micromonosporales order 0 1 23505 390 19 28056 Micromonosporaceae family 0 1 0 1 genus Plantactinospora 4 673534 97 4861 0 no rank 3 2631981 4764 1613 0 species Plantactinospora sp. BC1 1 2108470 1437 1 2071627 Plantactinospora sp. BB1 species 0 1714 species 0 Plantactinospora sp. KBS50 1 2024580 2091 28 3 168694 Salinispora genus 1 0 1115 species 0 Salinispora arenicola 1 168697 948 Salinispora tropica 0 species 1 168695 6 Verrucosispora genus 0 1 84593 Micromonospora 1 0 genus 4 1873 102 5148 Verrucosispora maris species 0 1 1003110 1533 Micromonospora aurantiaca 0 species 47850 1 1720 no rank 0 2617518 1 1793 1793 0 species Micromonospora sp. L5 648999 1 11009 187 6 1865 Actinoplanes genus 0 1 2626549 3 no rank 0 6709 649831 1 Actinoplanes sp. N902-109 0 species 2953 1878 species 0 Actinoplanes sp. SE50/110 1 134676 2033844 1 Actinoplanes sp. SE50 species 0 1878 Actinoplanes missouriensis 0 species 1 1866 1984 species 0 Actinoplanes friuliensis 196914 1 2129 1 1522 Nakamurellales 1 0 order 4 1643684 Nakamurellaceae 1 0 family 85031 3 43 1521 1478 27 53460 2 Nakamurella 1 0 genus 1 53461 Nakamurella multipartita 0 species 1451 85011 82 order 1 0 Streptomycetales 137985 293 Streptomycetaceae 1 0 family 2062 81 889 137692 0 1 genus Streptomyces 1883 75 5010 128720 1 68280 Streptomyces violaceusniger 0 species 1481 1548 0 species Streptomyces pristinaespiralis 1 38300 1935 1 species 0 Streptomyces violaceoruber 1253 1704 species 0 Streptomyces scabiei 1930 1 Streptomyces glaucescens species 0 1 1907 1557 1467 0 species Streptomyces peucetius 1 1950 1510 species 0 Streptomyces xinghaiensis 1038928 1 1254 Streptomyces ambofaciens species 0 1 1889 1241 0 species Streptomyces niveus 193462 1 1385 species 0 Streptomyces formicae 1 1616117 1 1915 Streptomyces lincolnensis 0 species 1795 1589 1 42684 species 0 Streptomyces collinus 1805 0 species Streptomyces leeuwenhoekii 1437453 1 1658 Streptomyces malaysiensis 0 species 1 92644 75293 1 species 0 Streptomyces autolyticus 1794 1 1914 0 species Streptomyces lavendulae 1516 0 species Streptomyces alboflavus 1 67267 1618 0 species Streptomyces pactum 1 68249 3020 978 species 0 Streptomyces pluripotens 1355015 1 species 0 Streptomyces albus 1888 1 3347 1482 1 362257 0 species Streptomyces vietnamensis species 0 Streptomyces cattleya 1 29303 1693 1426 species 0 Streptomyces gilvosporeus 1 553510 species group 0 1477431 2 3121 1 1902 Streptomyces coelicolor species 0 1439 42239 1 species 0 Streptomyces sampsonii 1682 0 species Streptomyces rubrolavendulae 1 285473 1322 1755 Streptomyces griseochromogenes species 0 1 68214 Streptomyces sp. S10(2016) species 0 1783515 1 1433 1735 1642299 1 0 species Streptomyces alfalfae species 0 Streptomyces parvulus 146923 1 1502 1585 Streptomyces lividans species 0 1916 1 Streptomyces albulus species 0 68570 1 1524 1769 1969 1 Streptomyces chartreusis 0 species 1488 Streptomyces avermitilis 0 species 33903 1 1 1901 species 0 Streptomyces clavuligerus 1525 1971 1 Streptomyces noursei 0 species 1792 1285 68192 1 species 0 Streptomyces cyaneogriseus 2758 Streptomyces venezuelae 0 species 54571 1 0 species Streptomyces lydicus 1 47763 4526 2 629295 species group 0 2734 species subgroup 0 1 1482596 1362 1 1911 Streptomyces griseus 0 species 1362 1372 species subgroup 0 1482558 1 Streptomyces globisporus 0 species 1 1908 1372 1549 Streptomyces xiamenensis 0 species 1 408015 Streptomyces hygroscopicus species 0 1912 1 4055 1470 1940 1 species 0 Streptomyces albireticuli 1 2049881 species 0 Streptomyces sp. XZHG99 1341 species 0 Streptomyces fulvissimus 1 68202 1519 1240 1 1169025 species 0 Streptomyces pratensis 1 1926 Streptomyces reticuli species 0 1763 36393 24 2593676 no rank 0 0 species Streptomyces sp. CCM_MD2014 1561022 1 1431 species 0 Streptomyces sp. Tue 6075 1661694 1 1361 Streptomyces sp. PAMC 26508 0 species 1 1265601 1278 Streptomyces sp. WAC00288 species 0 1 2094021 1179 1301 0 species Streptomyces sp. CLI2509 1 1984801 1732 444103 1 species 0 Streptomyces sp. CNQ-509 Streptomyces sp. CMB-StM0423 0 species 2059884 1 1853 1502 Streptomyces sp. CFMR 7 0 species 1649184 1 1470 species 0 Streptomyces sp. 3211 1 1964449 1412 1837283 1 0 species Streptomyces sp. S8 1283 1 1812480 species 0 Streptomyces sp. fd1-xmd 1078 234612 1 Streptomyces sp. TN58 species 0 1 1961713 0 species Streptomyces sp. MOE7 1294 1725411 1 Streptomyces sp. CdTB01 species 0 2108 1531 1 465541 0 species Streptomyces sp. Mg1 0 species Streptomyces sp. SAT1 1 1849967 1689 1841249 1 Streptomyces sp. RTd22 0 species 1789 1614 206662 1 species 0 Streptomyces sp. FR-008 1927 1 1262452 species 0 Streptomyces sp. 769 1824 1 2135430 0 species Streptomyces sp. P3 Streptomyces sp. M56 0 species 1495638 1 1886 1167 species 0 Streptomyces sp. SirexAA-E 862751 1 Streptomyces sp. Sge12 0 species 1 1972846 1456 1228 species 0 Streptomyces sp. 4F 1751294 1 1 379067 0 species Streptomyces bingchenggensis 2471 0 species Streptomyces puniciscabiei 164348 1 1934 8083 104 5 2063 0 1 genus Kitasatospora 1864 1894 1 0 species Kitasatospora aureofaciens 2167 1 2633591 no rank 0 2167 species 0 Kitasatospora sp. MMS16-BH015 1 2018025 2092 1 2066 Kitasatospora setae 0 species 1856 68173 1 species 0 Kitasatospora albolonga 6308 57 12 2039638 Candidatus Nanopelagicales 1 0 order 6251 11 2162846 0 family 2039639 4 1 0 genus Candidatus Nanopelagicus 3172 399 1884915 1 species 0 Candidatus Nanopelagicus hibericus 657 1 1884634 Candidatus Nanopelagicus limnes species 0 816 1 1884916 0 species Candidatus Nanopelagicus abundans 1300 29 3079 genus 1 0 Candidatus Planktophila 622681 7 1884904 1 0 species Candidatus Planktophila sulfonica 360 Candidatus Planktophila versatilis species 0 1 1884905 464 Candidatus Planktophila lacus species 0 1884913 1 668 573600 1 Candidatus Planktophila limnetica 0 species 562 0 species Candidatus Planktophila vernalis 1 1884907 289 707 1 1884914 Candidatus Planktophila dulcis species 0 1546 2 4 622452 order 0 1 Kineosporiales Kineosporiaceae 1 0 family 3 83778 61 1544 1483 16 33981 2 genus 1 0 Kineococcus 131568 1 species 0 Kineococcus radiotolerans 1467 414714 4 Catenulisporales 0 1 order 2529 15 3 414877 family 1 0 Catenulisporaceae 2514 38 30 2476 Catenulispora 0 1 genus 2 414878 2446 304895 1 0 species Catenulispora acidiphila 16 85012 Streptosporangiales order 0 1 14886 71 Thermomonosporaceae 0 1 family 2012 3 49 2462 2413 75 2019 2 1 0 genus Thermomonospora 2338 0 species Thermomonospora curvata 2020 1 Streptosporangiaceae family 1 0 2004 5 71 6560 2537 39 2000 2 Streptosporangium genus 0 1 2498 1 2001 Streptosporangium roseum species 0 3952 50 2 83681 Nonomuraea genus 1 0 0 no rank 1 2593643 3902 1909395 1 Nonomuraea sp. ATCC 55076 species 0 3902 5793 74 83676 7 Nocardiopsaceae 0 1 family 186 4798 Nocardiopsis 1 0 genus 2013 4 Nocardiopsis dassonvillei species 0 2014 1 1988 Nocardiopsis gilva 0 species 1 280236 1394 1230 0 species Nocardiopsis alba 53437 1 921 11 2 83677 Thermobifida genus 1 0 2021 1 Thermobifida fusca species 0 910 179 154909 Bifidobacteriales 0 1 order 25 85004 Bifidobacteriaceae 0 1 family 24 31953 10215 154730 674 1 196081 genus 0 78259 1 Scardovia inopinata species 0 674 2140 141074 Bifidobacterium 0 1 genus 1678 19 1906 35760 1 Bifidobacterium choerinum species 0 3459 species 0 Bifidobacterium scardovii 158787 1 species 0 Bifidobacterium dentium 1 1689 1853 1 28025 Bifidobacterium animalis 0 species 2608 Bifidobacterium longum species 0 216816 1 43707 729 Bifidobacterium indicum 0 species 1691 1 2722 1683 1 0 species Bifidobacterium angulatum 3590 Bifidobacterium adolescentis 0 species 1 1680 3019 1 33905 Bifidobacterium thermophilum 0 species Bifidobacterium pseudocatenulatum 0 species 1 28026 5607 Bifidobacterium actinocoloniiforme species 0 638619 1 872 1681 1 species 0 Bifidobacterium bifidum 25193 750 1687 1 0 species Bifidobacterium coryneforme 2510 0 species Bifidobacterium pseudolongum 1 1694 1 1685 Bifidobacterium breve 0 species 31741 Bifidobacterium asteroides 0 species 1 1684 1171 2117 7497 species 1 0 Bifidobacterium catenulatum 1686 2 630129 1 Bifidobacterium kashiwanohense subspecies 0 5380 2701 1 genus 0 1523 1523 0 species Gardnerella vaginalis 2702 1 1244 3 2 196082 0 1 genus Parascardovia 1241 species 0 Parascardovia denticolens 78258 1 6152 20 85013 7 Frankiales 0 1 order 115 6132 Frankiaceae family 0 1 6 74712 genus 0 1 Frankia 5 1854 110 6017 1014 106370 1 Frankia casuarinae 0 species 1594 1 1859 Frankia alni 0 species 1448 0 no rank 2632575 1 298653 1 0 species Frankia sp. EAN1pec 1448 1851 298654 1 0 species Frankia inefficax 1643818 2 0 no rank 1132 147067 2 Thermobispora genus 1 0 1132 4 1 2006 Thermobispora bispora 0 species 1128 4 85014 1 0 order Glycomycetales 1708 6 85034 3 Glycomycetaceae 0 1 family 1702 36 1666 26 283810 2 Stackebrandtia genus 0 1 species 0 Stackebrandtia nassauensis 1 283811 1640 1046 104372 order 0 1 Micrococcales 144 85006 1 577468 no rank 0 72 72 genus 0 2038 1 72 0 species Tropheryma whipplei 1 2039 Microbacteriaceae family 0 1 85023 48 779 33779 1 269 Aurantimicrobium genus 1 0 2 1705353 species 0 Aurantimicrobium minutum 1 708131 268 genus 0 1 Microterricola 518733 2 4 1268 1 412690 species 0 Microterricola viridarii 1264 Frondihabitans genus 1 0 447237 2 6 895 1 2626248 0 no rank 889 species 0 Frondihabitans sp. PAMC 28766 1795630 1 889 1 804 Microcella 1 0 genus 2 337004 803 species 0 Microcella alkaliphila 279828 1 Clavibacter 0 1 genus 1573 6 159 4282 781 4123 Clavibacter michiganensis 0 1 species 28447 5 31964 1 Clavibacter sepedonicus subspecies 0 1034 1 31963 subspecies 0 Clavibacter nebraskensis 708 736 0 subspecies Clavibacter insidiosus 33014 1 0 subspecies Clavibacter capsici 1874630 1 864 2575 121 69578 3 genus 0 1 Cryobacterium 1 2649013 0 no rank 1077 1077 Cryobacterium sp. LW097 0 species 1 1978566 1377 Cryobacterium arcticum 0 species 670052 1 13013 291 33882 14 genus 1 0 Microbacterium 7858 8 2609290 0 no rank 1916917 1 species 0 Microbacterium sp. 1.5R 855 759 species 0 Microbacterium sp. TPU 3598 1938334 1 1 367477 Microbacterium sp. XT11 0 species 971 1364 Microbacterium sp. No. 7 0 species 1714373 1 860 0 species Microbacterium sp. BH-3-3-3 1906742 1 0 species Microbacterium sp. CGR1 1696072 1 891 1795053 1 Microbacterium sp. PAMC 28756 0 species 1055 1 2103230 0 species Microbacterium sp. str. 'China' 1103 726 1 84292 Microbacterium chocolatum species 0 1097 36805 1 0 species Microbacterium aurum 1 162426 species 0 Microbacterium hominis 1151 1 300019 Microbacterium paludicola 0 species 978 912 Microbacterium testaceum species 0 1 2033 0 genus 1 1434032 242 242 Pontimonas salivibrio species 0 1159327 1 42 2252 Leifsonia 1 0 genus 110932 2 2210 1575 1 Leifsonia xyli species 0 1249 46 3 33886 Rathayibacter genus 1 0 850 1 33888 0 species Rathayibacter tritici 145458 1 Rathayibacter toxicus species 0 353 1 0 genus Curtobacterium 4 2034 81 2965 1918 0 no rank 2 257496 937 1 1561023 species 0 Curtobacterium sp. MR_MD2014 1 1905847 Curtobacterium sp. BH-2-1-1 0 species 981 Curtobacterium pusillum 0 species 1 69373 966 genus 0 33877 1 1362 1 453304 Agromyces aureus species 0 1362 2 1759331 0 1 genus Cnuibacter 1200 2 1 1619308 Cnuibacter physcomitrellae 0 species 1198 624 3 1655488 0 no rank 0 clade 1655489 3 624 529883 3 genus 0 1 Rhodoluna 624 1 335 1 535712 species 0 Candidatus Rhodoluna planktonica 288 529884 1 0 species Rhodoluna lacicola 0 family 85022 2 277 Jonesia genus 1 0 2 43673 12 277 265 Jonesia denitrificans 0 species 43674 1 1678 36 85019 3 family 1 0 Brevibacteriaceae 2 1696 0 1 genus Brevibacterium 1642 39 1703 1 0 species Brevibacterium linens 1603 1148 3 125316 3 Beutenbergiaceae family 1 0 1145 47 2 84756 0 1 genus Beutenbergia 1098 84757 1 Beutenbergia cavernae 0 species 85021 9 1 0 family Intrasporangiaceae 5009 54 19 1179 Janibacter 1 0 genus 2 53457 Janibacter indicus species 0 1 857417 1160 1564 12 267408 2 1 0 genus Arsenicicoccus 1552 1 2663846 0 no rank species 0 Arsenicicoccus sp. oral taxon 190 1 1658671 1552 Serinicoccus 0 1 genus 2 265976 36 1357 1321 1 1758689 0 species Serinicoccus sp. JLT9 53357 2 Intrasporangium 0 1 genus 855 8 Intrasporangium calvum species 0 53358 1 847 7 145357 0 1 family Dermacoccaceae 3377 32 57499 2 1 0 genus Kytococcus 1146 22 1124 1 1276 species 0 Kytococcus sedentarius genus 0 1 Dermacoccus 57495 2 19 1056 1037 1274 1 0 species Dermacoccus nishinomiyaensis 1143 16 2 745364 Luteipulveratus 1 0 genus 1127 0 species Luteipulveratus mongoliensis 1 571913 Dermabacteraceae 0 1 family 85020 11 72 8652 genus 0 1 Brachybacterium 43668 6 191 7534 1158 Brachybacterium sp. VR2415 0 species 2017485 1 1434 1 2017484 Brachybacterium sp. VM2412 species 0 1543 1331682 1 Brachybacterium ginsengisoli 0 species 1 2623841 no rank 0 1517 1903186 1 0 species Brachybacterium sp. P6-10-X1 1517 Brachybacterium faecium species 0 43669 1 1691 Dermabacter 0 1 genus 36739 2 3 583 580 Dermabacter vaginalis species 0 1630135 1 472568 2 Devriesea 1 0 genus 463 20 Devriesea agamarum 0 species 472569 1 443 Micrococcaceae 0 1 family 1268 39 1991 36133 3210 50 4 57493 Kocuria genus 0 1 1087 446860 1 Kocuria flava 0 species 1097 72000 1 Kocuria rhizophila species 0 976 species 0 Kocuria palustris 71999 1 3 32207 Rothia 0 1 genus 4945 18 3909 43675 1 Rothia mucilaginosa 0 species species 0 Rothia dentocariosa 2047 1 1018 68 3316 Pseudarthrobacter 0 1 genus 1742993 4 1062 0 species Pseudarthrobacter phenanthrenivorans 1 361575 1064 1 121292 Pseudarthrobacter sulfonivorans 0 species 1122 0 species Pseudarthrobacter chlorophenolicus 1 85085 20 630 Neomicrococcus genus 0 1 2 1868332 Neomicrococcus aestuarii species 0 556325 1 610 genus 0 1 Micrococcus 1269 2 30 1450 1420 1 1270 species 0 Micrococcus luteus genus 0 2078575 1 591 591 Arthrobacter sp. IHBB 11108 species 0 1618207 1 3 1485 1 0 genus Glutamicibacter 2 1742989 1482 Glutamicibacter arilaitensis 0 species 256701 1 2 1742992 genus 1 0 Paenarthrobacter 764 3 Paenarthrobacter aurescens 0 species 43663 1 761 596707 2 0 1 genus Sinomonas 1273 16 1257 37927 1 Sinomonas atrocyanea 0 species Arthrobacter genus 1 0 1663 15 321 16205 1 37928 0 species Arthrobacter crystallopoietes 1311 235627 12 0 no rank 13024 1386 1690248 1 species 0 Arthrobacter sp. LS16 Arthrobacter sp. Rue61a 0 species 1118963 1 705 1016 1 1494608 Arthrobacter sp. PAMC 25486 species 0 1166 species 0 Arthrobacter sp. QXT-31 1357915 1 1 2020486 species 0 Arthrobacter sp. YN 952 1107 1 290399 species 0 Arthrobacter sp. FB24 1418 1652545 1 Arthrobacter sp. YC-RL1 species 0 Arthrobacter sp. ERGS1:01 species 0 1704044 1 1335 1086 2079227 1 Arthrobacter sp. PGP41 0 species 1 1849032 species 0 Arthrobacter sp. U41 1210 0 species Arthrobacter sp. ZXY-2 1806905 1 836 1771959 1 Arthrobacter sp. ATCC 21022 species 0 807 656366 1 0 species Arthrobacter alpinus 1549 1 1645 0 genus 273 273 Renibacterium salmoninarum 0 species 1 1646 4638 40 6 85016 Cellulomonadaceae family 0 1 4598 105 5 1707 genus 0 1 Cellulomonas Cellulomonas flavigena species 0 1711 1 1130 Cellulomonas gilvus species 0 1 11 1022 Cellulomonas fimi 0 species 1 1708 1310 2620175 1 no rank 0 1031 1031 species 0 Cellulomonas sp. PSBB021 2003551 1 3 407 Dermatophilaceae 1 0 family 85018 3 404 1 2 1862 Dermatophilus 0 1 genus 403 species 0 Dermatophilus congolensis 1863 1 40 6702 family 1 0 Promicromonosporaceae 9 85017 254250 3 Isoptericola genus 0 1 2408 32 1216 species 0 Isoptericola dokdonensis 1 372663 139208 1 Isoptericola variabilis species 0 1160 1545 18 2 186188 Xylanimonas 0 1 genus 1527 186189 1 Xylanimonas cellulosilytica species 0 0 1 genus Cellulosimicrobium 3 157920 36 2709 1710 1 Cellulosimicrobium cellulans 0 species 1412 no rank 0 2624466 1 1261 1261 1980001 1 Cellulosimicrobium sp. TH-20 0 species 1454 145360 2 0 family 2 60919 0 1 genus Sanguibacter 1454 31 1 60920 Sanguibacter keddieii species 0 1423 0 order 3 1643683 532 3 85032 family 1 0 Acidothermaceae 532 2 Acidothermus 0 1 genus 2 28048 6 530 28049 1 species 0 Acidothermus cellulolyticus 524 186 1 52018 no rank 0 Actinobacteria bacterium IMCC26256 0 species 1650658 1 186 4 67819 0 phylum 1088 1 0 class Fimbriimonadia 1663419 4 2 1088 3 1663425 order 0 1086 Fimbriimonadaceae 0 1 family 3 1663426 8 1086 4 1078 0 1 genus Fimbriimonas 1005038 2 1005039 1 0 species Fimbriimonas ginsengisoli 1074 36 1297 0 phylum 34749 34749 273 36 188787 Deinococci 0 1 class 17 68933 1 0 order Thermales 12642 228 12414 101 188786 16 family 1 0 Thermaceae 7132 187 270 8 0 1 genus Thermus 959 56957 1 species 0 Thermus oshimai 1070 271 1 Thermus aquaticus species 0 764 2619321 1 0 no rank species 0 Thermus sp. CCB_US3_UF1 1111069 1 764 Thermus parvatiensis species 0 1 456163 936 Thermus brockianus species 0 1 56956 592 species 0 Thermus thermophilus 1 274 2001 37636 1 Thermus scotoductus species 0 623 7 2360 Meiothermus 0 1 genus 3 65551 52022 1 species 0 Meiothermus silvanus 1199 277 1 Meiothermus ruber species 0 1154 2 208447 Oceanithermus 0 1 genus 1900 16 Oceanithermus profundus species 0 1 187137 1884 10 921 Marinithermus 0 1 genus 2 186191 Marinithermus hydrothermalis species 0 186192 1 911 order 0 2762275 3 1815 3 332247 1 0 family Trueperaceae 1815 6 1809 3 332248 2 Truepera genus 0 1 1806 332249 1 species 0 Truepera radiovictrix 20019 284 118964 15 Deinococcales 1 0 order 19735 178 14 183710 family 0 1 Deinococcaceae 19557 291 1298 13 1 0 genus Deinococcus 1 310783 species 0 Deinococcus deserti 1167 309887 1 0 species Deinococcus maricopensis 1653 1129 1 1182568 Deinococcus puniceus species 0 1692 0 species Deinococcus actinosclerus 1768108 1 432329 1 species 0 Deinococcus peraridilitoris 1246 1817 species 0 Deinococcus proteolyticus 55148 1 1542 2623546 1 no rank 0 2080419 1 Deinococcus sp. NW-56 0 species 1542 Deinococcus swuensis species 0 1182571 1 1917 2131 species 0 Deinococcus gobiensis 1 502394 1 68909 Deinococcus geothermalis 0 species 1284 1876 Deinococcus soli Cha et al. 2016 0 species 1309411 1 1812 1 1299 0 species Deinococcus radiodurans 0 1 phylum Chloroflexi 200795 46 27 19657 4384 20 292625 7 class 1 0 Anaerolineae 13 4364 Anaerolineales 1 0 order 6 292629 292628 5 Anaerolineaceae family 0 1 4351 35 genus 0 1 233189 1097 Anaerolinea thermophila species 0 1 167964 1097 2019482 2 Brevefilum genus 0 1 938 1 1 1986204 0 species Brevefilum fermentans 937 no rank 0 1 1324991 2281 2281 1889813 1 species 0 Anaerolineaceae bacterium oral taxon 439 1 0 class Caldilineae 475962 5 7 1293 order 0 1 Caldilineales 4 475963 16 1286 2 1270 Caldilineaceae 1 0 family 3 475964 24 1268 Caldilinea 0 1 genus 2 233191 Caldilinea aerophila 0 species 133453 1 1244 Ardenticatenia class 1 0 5 1382928 310 2924 4 1382929 order 1 0 Ardenticatenales 2614 33 3 1382930 0 1 family Ardenticatenaceae 2581 15 2566 17 2 1988031 1 0 genus Candidatus Promineofilum 2549 1806508 1 0 species Candidatus Promineofilum breve 88 4770 Dehalococcoidia 0 1 class 8 301297 1 2819 1 0 order Dehalococcoidales 4 1202465 2818 3 1202464 0 family 61434 3 1 0 genus Dehalococcoides 2818 5 no rank 0 237581 1 490 0 species Dehalococcoides sp. UCH007 1 1522671 490 61435 1 0 species Dehalococcoides mccartyi 2323 40 1863 genus 0 1 Dehalogenimonas 3 670486 669 552810 1 Dehalogenimonas lykanthroporepellens species 0 1154 species 0 Dehalogenimonas formicexedens 1 1839801 27 1907 class 0 1 Thermomicrobia 189775 9 1425 subclass 0 85000 4 85001 4 Sphaerobacterales 1 0 order 1425 36 3 255728 0 suborder 1389 3 85002 0 1 family Sphaerobacteraceae 1389 34 1355 16 2 2056 Sphaerobacter 0 1 genus 1339 0 species Sphaerobacter thermophilus 2057 1 455 5 189776 4 Thermomicrobiales order 0 1 family 0 1 Thermomicrobiaceae 3 189777 4 450 2 499 genus 0 1 Thermomicrobium 446 2 444 500 1 Thermomicrobium roseum species 0 11 4352 class 1 0 Chloroflexia 11 32061 4341 59 10 32064 Chloroflexales order 1 0 1887 1508594 5 suborder 0 5 1106 family 1 0 Chloroflexaceae 1887 6 Chloroflexus genus 1 0 4 1107 50 1881 519 152260 1 Chloroflexus aggregans species 0 Chloroflexus aurantiacus species 1 0 1108 2 658 1312 654 1 480224 strain 0 Chloroflexus sp. Y-400-fl 2395 suborder 0 1508595 4 4 1508635 0 1 family Roseiflexaceae 2395 12 120961 3 Roseiflexus genus 0 1 2383 7 Roseiflexus castenholzii species 0 120962 1 1472 904 1 2609473 0 no rank 904 Roseiflexus sp. RS-1 species 0 1 357808 453 no rank 0 1859062 2 0 1 genus Thermobaculum 262406 2 18 453 166501 1 Thermobaculum terrenum species 0 435 1756 0 phylum 200938 5 class 0 1 Chrysiogenetes 118001 5 25 1756 1731 49 189769 4 order 1 0 Chrysiogenales 4 1682 Chrysiogenaceae family 0 1 3 189770 Desulfurispirillum genus 0 1 2 393029 38 1678 936456 1 Desulfurispirillum indicum 0 species 1640 9116 9 200930 0 phylum 9116 39 68337 9 Deferribacteres 0 1 class Deferribacterales 0 1 order 191393 8 14 9077 9063 54 191394 7 family 1 0 Deferribacteraceae 1165 4 2351 2 genus 0 1 Flexistipes 0 species Flexistipes sinusarabici 2352 1 1161 3076 1 545865 2 1 0 genus Calditerrivibrio Calditerrivibrio nitroreducens species 0 1 477976 3075 0 genus 117999 1 970 1 118000 Denitrovibrio acetiphilus species 0 970 genus 0 1 53572 3798 Deferribacter desulfuricans species 0 197162 1 3798 1621 1930617 5 0 phylum 2 1621 class 0 1 Calditrichae 5 1962850 4 1962852 Calditrichales 1 0 order 1619 27 Calditrichaceae 1 0 family 1962854 3 18 1592 0 1 genus Caldithrix 187144 2 6 1574 1568 0 species Caldithrix abyssi 187145 1 108915 278 2157 0 superkingdom 14904 clade 0 52 1783275 11122 28889 39 0 phylum 183924 39 1 0 class Thermoprotei 11122 10 114380 14 Desulfurococcales 1 0 order 1069 6 190 0 family 2307 4 67 0 genus 1 54251 67 1 54252 0 species Pyrolobus fumarii 63 0 genus 1 54247 1 54248 Hyperthermus butylicus 0 species 63 2 2308 1 0 genus Pyrodictium 60 1 species 0 Pyrodictium delaneyi 1273541 1 59 1 873 1 0 family Desulfurococcaceae 2272 9 22 genus 0 1 54253 22 1 54254 0 species Thermosphaera aggregans 54258 2 genus 0 136 27 54259 1 Ignicoccus islandicus species 0 109 Ignicoccus hospitalis 0 species 160233 1 149 2 2273 genus 0 25 species 0 Desulfurococcus mucosus 1 2275 94694 1 Desulfurococcus amylolyticus species 0 124 471 2 2279 genus 0 0 species Staphylothermus hellenicus 84599 1 235 236 Staphylothermus marinus species 0 1 2280 94 1 477695 0 genus 0 species Thermogladius calderae 1200300 1 94 order 0 3 871006 2510 227 0 family 1 871007 227 genus 0 1 105850 species 0 Acidilobus saccharovorans 1 242703 227 2283 2 2 255472 Caldisphaeraceae family 1 0 2281 200414 1 genus 0 Caldisphaera lagunensis 0 species 200415 1 2281 6534 0 order 2281 8 family 0 8 118883 6534 269 genus 0 2 41980 Metallosphaera cuprina species 0 1006005 1 171 0 species Metallosphaera sedula 1 43687 98 2628 genus 0 2284 3 43080 1 Sulfolobus islandicus 0 species 871 no rank 0 2641160 1 795 795 1891280 1 species 0 Sulfolobus sp. A20 2285 1 species 0 Sulfolobus acidocaldarius 962 423 0 genus 2100760 1 2287 1 species 0 Sulfolobus solfataricus 423 2098 0 genus 1 69655 2098 1 111955 Sulfolobus tokodaii 0 species 1116 0 genus 12914 1 1116 1 563177 species 0 Acidianus hospitalis 13 2266 0 order 999 family 0 1 Thermofilaceae 6 114378 2 385 3 383 genus 1 0 Thermofilum 5 2268 94 Thermofilum adornatus species 0 1 1365176 101 species 0 Thermofilum pendens 1 2269 0 species Thermofilum uzonense 1 1550241 91 1 1483572 species 0 Thermofilum carboxyditrophus 94 614 3 7 2267 Thermoproteaceae 0 1 family 240 genus 0 164450 2 104 species 0 Vulcanisaeta distributa 1 164451 species 0 Vulcanisaeta moutnovskia 985052 1 136 genus 0 1 2276 78 78 Pyrobaculum islandicum species 0 1 2277 194 2270 2 genus 0 Thermoproteus tenax species 0 2271 1 110 Thermoproteus uzoniensis 0 species 184117 1 84 99 genus 0 1 76886 species 0 Caldivirga maquilingensis 1 76887 99 106 0 phylum 51967 1 106 498845 1 0 genus 106 1 498846 species 0 Candidatus Korarchaeum cryptofilum 651137 12 0 phylum 3676 11 556 Nitrososphaeria class 1 0 6 1643678 377 3 1033996 2 Nitrososphaerales order 0 1 374 1033997 1 0 family 374 genus 0 497726 1 1034015 1 Nitrososphaera viennensis species 0 374 2 168 order 1 0 Candidatus Nitrosocaldales 1968909 3 2 166 Candidatus Nitrosocaldaceae 0 1 family 2 1968910 164 genus 0 498374 1 2045011 1 species 0 Candidatus Nitrosocaldus islandicus 164 order 0 3 31932 1911 338190 3 0 family 1911 genus 0 2 338191 1216 1 1229909 Candidatus Nitrosopumilus sediminis 0 species 873 343 species 0 Candidatus Nitrosopumilus adriaticus 1 1580092 695 genus 0 1993653 1 695 species 0 Candidatus Nitrosomarinus catalina 1898749 1 0 no rank 3 651142 1209 genus 0 2 1825023 371 224 1846278 1 species 0 Candidatus Nitrosotenuis sp. AQ6f 0 species Candidatus Nitrosotenuis cloacae 1603555 1 147 0 genus 1 1593364 838 species 0 Candidatus Nitrosopelagicus brevis 1410606 1 838 48 1 1783276 0 clade phylum 0 1 1801631 48 48 genus 0 2490204 1 48 species 0 Candidatus Micrarchaeota archaeon Mia14 1920749 1 93963 31 225 28890 phylum 0 1 Euryarchaeota 8801 19 183968 40 Thermococci 0 1 class 8782 15 2258 39 order 1 0 Thermococcales 1 0 family Thermococcaceae 2259 38 7 8767 83867 1 0 genus 202 1 971279 Palaeococcus pacificus species 0 202 1937 7 2260 genus 0 53953 1 species 0 Pyrococcus horikoshii 218 1609559 1 Pyrococcus kukulkanii 0 species 167 0 no rank 2 2629106 900 648 1 342949 Pyrococcus sp. NA2 0 species 0 species Pyrococcus sp. ST04 1 1183377 252 185 1008460 1 Pyrococcus yayanosii species 0 1 2261 Pyrococcus furiosus 0 species 312 Pyrococcus abyssi species 0 1 29292 155 52 6621 genus 0 1 Thermococcus 2263 29 163003 1 Thermococcus cleftensis 0 species 237 1196 0 no rank 2627626 6 122420 1 0 species Thermococcus sp. P6 208 1042877 1 0 species Thermococcus sp. 4557 342 0 species Thermococcus sp. AM4 1 246969 143 1 2008440 Thermococcus sp. 5-4 species 0 159 2016361 1 species 0 Thermococcus sp. EXT12c 155 1 1674923 0 species Thermococcus sp. 2319x1 189 0 species Thermococcus kodakarensis 1 311400 111 49899 1 Thermococcus profundus species 0 130 197 Thermococcus gammatolerans 0 species 1 187878 161 1 71997 Thermococcus gorgonarius 0 species 244 Thermococcus celer 0 species 2264 1 462 0 species Thermococcus onnurineus 1 342948 230 187880 1 Thermococcus radiotolerans species 0 species 0 Thermococcus siculi 1 72803 142 0 species Thermococcus piezophilus 1712654 1 97 0 species Thermococcus peptonophilus 53952 1 200 1505907 1 Thermococcus eurythermalis species 0 474 277988 1 Thermococcus thioreducens species 0 230 0 species Thermococcus barossii 54077 1 223 191 Thermococcus nautili 0 species 1 195522 Thermococcus paralvinellae species 0 582419 1 261 1 110164 Thermococcus guaymasensis species 0 171 271 54262 1 species 0 Thermococcus chitonophagus 130 1 71998 Thermococcus pacificus 0 species Thermococcus sibiricus species 0 172049 1 405 483 55802 1 species 0 Thermococcus barophilus 1 2265 Thermococcus litoralis species 0 323 38098 2283794 39 clade 0 5 17418 Methanococci 1 0 class 183939 15 17413 0 order 14 2182 Methanococcaceae family 0 1 6 2183 1 10765 1722 155862 1 0 genus 1722 Methanothermococcus okinawensis 0 species 1 155863 2184 4 genus 0 9042 584 Methanococcus voltae 0 species 2188 1 5726 species 0 Methanococcus maripaludis 39152 1 1233 Methanococcus vannielii species 0 1 2187 1499 0 species Methanococcus aeolicus 1 42879 0 family 196117 8 6648 genus 0 1 Methanotorris 2 196119 2 1012 1010 1 2189 Methanotorris igneus 0 species 5636 196118 6 0 genus 1094 species 0 Methanocaldococcus vulcanius 73913 1 67760 1 Methanocaldococcus infernus species 0 326 Methanocaldococcus bathoardescens species 0 1301915 1 1331 Methanocaldococcus fervens 0 species 83171 1 1011 960 1 2190 0 species Methanocaldococcus jannaschii 914 0 no rank 2641196 1 Methanocaldococcus sp. FS406-22 0 species 644281 1 914 20680 14 24 183925 1 0 class Methanobacteria Methanobacteriales 1 0 order 2158 23 14 20666 1347 1 2178 family 0 1347 genus 0 2179 1 1347 Methanothermus fervidus species 0 2180 1 8 19305 family 1 0 Methanobacteriaceae 2159 21 1693 2316 1 0 genus 1693 2317 1 species 0 Methanosphaera stadtmanae genus 0 4 145260 588 species 0 Methanothermobacter wolfeii 145261 1 61 Methanothermobacter thermautotrophicus species 0 145262 1 213 145263 1 species 0 Methanothermobacter marburgensis 192 122 2631116 1 0 no rank 866790 1 Methanothermobacter sp. CaT2 species 0 122 1 3705 Methanobacterium genus 0 1 2160 8 Methanobacterium paludis species 0 1 868131 799 Methanobacterium congolense species 0 1 118062 536 0 species Methanobacterium subterraneum 1 59277 218 Methanobacterium lacus species 0 877455 1 555 1 2162 species 0 Methanobacterium formicicum 770 0 no rank 2 2627676 826 542 1379702 1 species 0 Methanobacterium sp. MB1 1 1911685 0 species Methanobacterium sp. MZ-A1 284 211 13311 genus 0 1 Methanobrevibacter 7 2172 2 2638681 no rank 0 4217 1609968 1 Methanobrevibacter sp. YE315 0 species 1953 1 224719 Methanobrevibacter sp. AbM4 0 species 2264 230361 1 Methanobrevibacter millerae 0 species 1695 1 2173 0 species Methanobrevibacter smithii 2134 species 0 Methanobrevibacter olleyae 294671 1 3578 1476 Methanobrevibacter ruminantium species 0 83816 1 1892 3 183980 11 Archaeoglobi class 1 0 3 1889 Archaeoglobales 1 0 order 10 2231 1 1886 Archaeoglobaceae family 0 1 2232 9 396 1 190818 3 Geoglobus genus 0 1 1 565033 Geoglobus acetivorans 0 species 296 Geoglobus ahangari 0 species 1 113653 99 1098 genus 0 4 2233 471 Archaeoglobus profundus species 0 84156 1 158 0 species Archaeoglobus sulfaticallidus 1 1316941 1 58290 0 species Archaeoglobus veneficus 289 180 0 species Archaeoglobus fulgidus 1 2234 391 0 genus 1 54260 391 54261 1 species 0 Ferroglobus placidus 6037 2283796 19 0 clade 513 clade 0 2 1803510 0 genus 2 379546 513 1 2633939 0 no rank 117 673860 1 Aciduliprofundum sp. MAR08-339 0 species 117 1 379547 0 species Aciduliprofundum boonei 396 class 0 1 Thermoplasmata 17 183967 17 5524 1235850 5 order 0 1678 family 0 2517203 2 347 genus 1 0 Candidatus Methanomethylophilus 1291539 2 6 347 341 Candidatus Methanomethylophilus alvus species 0 1 1291540 1577788 3 Methanomassiliicoccaceae family 0 1 1331 23 315 genus 0 1 1607807 species 0 Candidatus Methanoplasma termitum 1 1577791 315 0 genus 1080709 1 993 993 1 1406512 Candidatus Methanomassiliicoccus intestinalis 0 species 0 1 order Thermoplasmatales 2301 10 5 3476 family 0 2 90142 1289 genus 0 74968 2 1289 671 97393 1 species 0 Ferroplasma acidarmanus 618 74969 1 Ferroplasma acidiphilum species 0 824 1 46630 family 0 0 genus 46631 1 824 824 species 0 Picrophilus torridus 82076 1 1 359 family 0 1 Cuniculiplasmataceae 1747776 3 358 2 1747777 2 genus 1 0 Cuniculiplasma 1673428 1 species 0 Cuniculiplasma divulgatum 356 1 1919231 no rank 0 435 435 Thermoplasmatales archaeon BRNA1 species 0 1 1054217 46659 2 family 0 564 564 genus 0 2302 2 0 species Thermoplasma volcanium 50339 1 219 345 1 2303 Thermoplasma acidophilum 0 species 1 1234666 0 no rank 353 353 methanogenic archaeon ISO4-H5 0 species 1 1495144 39104 115 2290931 clade 0 22325 32 224756 53 class 0 1 Methanomicrobia 31 94695 Methanosarcinales order 1 0 16959 19 2206 26 Methanosarcinaceae family 0 1 16191 6 11177 11 13 2207 Methanosarcina 1 0 genus 699 0 species Methanosarcina thermophila 2210 1 617 1 2214 Methanosarcina acetivorans species 0 3473 Methanosarcina barkeri species 0 2208 1 325 1 170861 0 species Methanosarcina lacustris 418008 1 0 species Methanosarcina horonobensis 835 2644672 4 0 no rank 2758 Methanosarcina sp. MTP4 species 0 1 1434100 551 700 0 species Methanosarcina sp. WH1 1434102 1 759 Methanosarcina sp. WWM596 0 species 1434103 1 748 Methanosarcina sp. Kolksee species 0 1434099 1 753 38027 1 Methanosarcina siciliae 0 species 1145 1 2209 Methanosarcina mazei species 0 2215 1 Methanosarcina vacuolata 0 species 561 1 196136 0 genus 729 729 Methanosalsum zhilinae species 0 39669 1 3 2225 Methanococcoides genus 0 1 1005 1 Methanococcoides methylutens species 0 1 2226 597 407 0 species Methanococcoides burtonii 29291 1 Methanohalophilus 1 0 genus 3 2175 2 987 2176 1 species 0 Methanohalophilus mahii 253 1 2177 Methanohalophilus halophilus species 0 732 2 2321 Methanohalobium genus 1 0 1011 7 1004 1 2322 Methanohalobium evestigatum species 0 1 2220 0 genus 786 786 1 420950 species 0 Methanolobus psychrophilus 1 490 genus 1 0 Methanomethylovorans 2 101191 species 0 Methanomethylovorans hollandica 1 101192 489 2 749 Methanosaetaceae 1 0 family 4 143067 3 2222 Methanothrix genus 1 0 747 1 0 species Methanothrix soehngenii 1 2223 344 402 0 species Methanosaeta harundinacea 1 301375 1 0 order Methanomicrobiales 2191 17 8 4398 1453 7 6 1198451 Methanoregulaceae 0 1 family 639 10 395331 3 Methanoregula genus 0 1 species 0 Methanoregula boonei 358766 1 256 1 882104 Methanoregula formicica species 0 373 Methanosphaerula genus 1 0 475087 2 1 807 Methanosphaerula palustris 0 species 1 475088 806 1 196137 family 0 437 437 0 genus 2202 1 2203 1 Methanospirillum hungatei 0 species 437 2 2000 Methanomicrobiaceae 0 1 family 2194 7 4 45989 genus 1 0 Methanoculleus 1596 15 0 no rank 2619537 1 449 449 0 species Methanoculleus sp. MAB1 1 86622 517 1 2198 Methanoculleus marisnigri 0 species 615 0 species Methanoculleus bourgensis 83986 1 Methanolacinia genus 1 0 2 230355 1 402 0 species Methanolacinia petrolearia 54120 1 401 family 0 88404 2 500 4 500 Methanocorpusculum 0 1 genus 2 2192 496 1 83984 0 species Methanocorpusculum labreanum 15 936 Methanocellales order 1 0 570264 4 3 570265 0 family 921 570266 3 Methanocella genus 0 1 921 2 490 species 0 Methanocella arvoryzae 1 1175445 429 Methanocella conradii species 0 1175444 1 16779 109 62 183963 1 0 class Halobacteria 18 1644060 Natrialbales 0 1 order 4789 62 4727 71 1644061 17 family 1 0 Natrialbaceae 203193 1 genus 0 643 643 species 0 Halobiforma lacisalsi 229731 1 0 1 genus Salinarchaeum 2 1269201 2 325 323 0 no rank 2621923 1 323 1 1333523 species 0 Salinarchaeum sp. Harcht-Bsk1 625 1 387342 2 1 0 genus Halopiger 1 387343 Halopiger xanaduensis 0 species 624 2256 1 0 genus 259 44930 1 Natronobacterium gregoryi species 0 259 genus 0 1 63742 379 379 1 13769 Natrialba magadii 0 species 0 1 genus Haloterrigena 121871 3 2 771 Haloterrigena daqingensis 0 species 588898 1 236 62320 1 Haloterrigena turkmenica 0 species 533 942 6 88723 3 1 0 genus Natrinema 496 1 2622230 0 no rank 0 species Natrinema sp. J7-2 1 406552 496 440 1 69525 Natrinema pellirubrum species 0 1 29287 0 genus 371 29288 1 Natronococcus occultus 0 species 371 2 353799 genus 0 1 Halostagnicola 341 3 1 353800 0 species Halostagnicola larsenii 338 order 1 0 Halobacteriales 2235 26 62 6872 Haloarculaceae 0 1 family 15 1963268 34 4592 3 63743 Natronomonas genus 1 0 534 11 Natronomonas moolapensis 0 species 416273 1 277 246 0 species Natronomonas pharaonis 1 2257 5 2237 genus 0 1 Haloarcula 2142 25 2238 1 Haloarcula marismortui species 0 597 1 2624677 0 no rank 510 Haloarcula sp. CBA1115 0 species 1 1592728 510 0 species Haloarcula hispanica 51589 1 654 1 1932004 0 species Haloarcula taiwanensis 356 0 1 genus Halorhabdus 3 146825 12 848 Halorhabdus utahensis 0 species 146826 1 430 Halorhabdus tiamatea species 0 1 430914 406 genus 0 1 203135 457 57705 1 Halomicrobium mukohataei 0 species 457 2 1073987 Halorientalis 0 1 genus 577 12 1 2648975 0 no rank 565 565 1932360 1 species 0 Halorientalis sp. IM1011 1 0 family Halobacteriaceae 2236 10 6 2218 222 1 1980514 0 genus Halodesulfurarchaeum formicicum 0 species 1 1873524 222 4 2239 genus 1 0 Halobacterium 1461 15 0 no rank 2668073 1 445 751944 1 Halobacterium sp. DL1 species 0 445 1 2242 0 species Halobacterium salinarum 337 664 0 species Halobacterium hubeiense 1407499 1 4 224 1 0 genus Halanaeroarchaeum 1656823 2 1604004 1 species 0 Halanaeroarchaeum sulfurireducens 220 305 6 2 332246 Halalkalicoccus 1 0 genus 299 413810 1 0 species Halalkalicoccus jeotgali 46 5009 1 0 order Haloferacales 17 1644055 1644056 8 1 0 family Haloferacaceae 2537 3 299 1 60846 2 genus 0 1 Halogeometricum 298 Halogeometricum borinquense species 0 60847 1 295 1 293431 genus 0 295 1 293091 0 species Haloquadratum walsbyi 2251 4 Haloferax genus 1 0 1940 41 776 species 0 Haloferax gibbonsii 1 35746 647 2246 1 species 0 Haloferax volcanii 1 2252 species 0 Haloferax mediterranei 476 304 1 2678336 no rank 0 304 756883 1 0 species halophilic archaeon DL31 Halorubraceae family 0 1 7 1963271 48 2122 0 genus 1644057 1 702 0 species Salinigranum rubrum 755307 1 702 3 56688 Halorubrum genus 0 1 956 22 527 1 29284 0 species Halorubrum trapanicum 407 species 0 Halorubrum lacusprofundi 1 2247 1209988 2 Halopenitus genus 1 0 416 7 409 1048396 1 Halopenitus persicus 0 species