members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 31 17582 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4493 10314810 1 0 Bacteria 2 10271399 47 4208 superkingdom 5 phylum 0 200938 409 2 class 5 1 118001 409 0 Chrysiogenetes 4 order 9 Chrysiogenales 0 407 189769 1 1 0 Chrysiogenaceae 189770 398 6 3 family 392 393029 Desulfurispirillum 0 1 genus 2 2 936456 390 0 Desulfurispirillum indicum species 1 phylum 4 335 1930617 0 4 class 0 1962850 335 1 335 1962852 Calditrichales 0 1 order 4 1 1962854 334 0 Calditrichaceae 2 family 3 187144 332 0 Caldithrix 1 genus 2 7 0 Caldithrix abyssi 187145 325 1 species phylum 19 57723 2649 0 287 1562566 0 class 2 9 2 genus 1 0 Chloracidobacterium 458032 287 458033 278 0 Chloracidobacterium thermophilum species 1 204432 2362 0 Acidobacteriia 1 class 17 18 12 order 11 0 Acidobacteriales 204433 1746 1 1735 204434 Acidobacteriaceae 0 1 family 11 7 1 33973 348 0 Acidobacterium 2 genus 2 0 Acidobacterium capsulatum 33075 346 1 species genus 3 4 940557 480 0 Granulicella 1 species 1 940614 194 0 Granulicella mallensis 282 940615 Granulicella tundricola 0 species 1 2 genus 3 1 673 392733 Terriglobus 0 Terriglobus saanensis 0 239 870903 1 species species 1 432 392734 Terriglobus roseus 0 genus 2 1 227 658061 Candidatus Koribacter 0 1 species 1 658062 226 0 Candidatus Koribacter versatilis 598 332160 Solibacterales 0 1 order 4 14 584 332161 Solibacteraceae 0 1 family 3 6 2 genus 1 Candidatus Solibacter 0 578 332162 1 species 1 332163 577 0 Candidatus Solibacter usitatus clade 342 1783270 4838573 0 phylum 2 65842 907 0 2 class 0 204430 907 907 218872 0 order 2 1 family 2 1 907 204431 Fibrobacteraceae 0 1 genus 0 832 906 906 833 Fibrobacter succinogenes 0 species 1 clade 330 4836493 68336 0 20 phylum 0 5405 1090 11 20 class 1 Chlorobia 0 5405 191410 16 order 19 1 191411 5394 0 Chlorobiales 1 Chlorobiaceae 0 5378 191412 11 18 family 1 genus 0 100715 591 species 1 591 100716 Chloroherpeton thalassium 0 genus 4 1312 1101 0 394 1102 Prosthecochloris aestuarii 0 species 1 3 no rank 0 918 2632826 species 1 232 281093 Prosthecochloris sp. GSB1 0 1 species Prosthecochloris sp. CIB 2401 0 195 1868325 species 1 491 1974213 Prosthecochloris sp. HL-130-GSB 0 4 genus 4 1 256319 879 0 Chlorobaculum 274537 269 0 Chlorobaculum limnaeum species 1 species 1 228 1097 Chlorobaculum tepidum 0 species 1 274539 378 0 Chlorobaculum parvum 0 2585 274493 8 no rank 1 3 genus 1 0 Pelodictyon 1099 594 1 species 0 Pelodictyon luteolum 1100 333 Pelodictyon phaeoclathratiforme 0 260 34090 1 species 1 1091 1991 0 Chlorobium 1 genus 5 1094 229 0 Chlorobium phaeovibrioides species 1 1 species Chlorobium phaeobacteroides 0 919 1096 species 1 315 337090 Chlorobium chlorochromatii 0 1 species 0 Chlorobium limicola 1092 527 phylum 307 80 4829783 976 Bacteroidetes 0 1 class 13 5 1853228 13160 0 Chitinophagia 1 order 12 12 1853229 13155 0 Chitinophagales 1 8 family 11 1 13143 563835 Chitinophagaceae 0 genus 1 969 1769012 0 no rank 1 969 2636138 0 0 Arachidicoccus sp. BS20 1850526 969 1 species 1 genus 0 398041 1326 species 1 1492898 1326 0 Flavisolibacter tropicus 1 0 Filimonas 649460 1989 2 2 genus 1987 477680 Filimonas lacunae 0 species 1 1 2 genus 1 Niastella 0 1533 354354 species 1 354356 1532 0 Niastella koreensis 0 379899 2111 2 genus species 1 446683 1093 0 Niabella soli 1018 1176587 Niabella ginsenosidivorans 0 species 1 2 genus 0 5207 79328 1 species 0 Chitinophaga pinensis 79329 3609 1 species 0 Chitinophagaceae bacterium 13 2029983 1598 136 class 21 Flavobacteriia 0 115777 117743 1 78 135 order 1 Flavobacteriales 0 115756 200644 20 family 0 2762318 34228 1 308865 8737 0 Elizabethkingia 158 genus 6 species 1 1101 1756150 Elizabethkingia genomosp. 4 0 1 species Elizabethkingia anophelis 0 3303 1117645 1 species Elizabethkingia miricola 0 1457 172045 species 1 238 1572 0 Elizabethkingia meningoseptica 1 species Elizabethkingia genomosp. 3 0 1146 1756149 genus 1 34084 1257 0 species 1 1257 34085 Riemerella anatipestifer 0 no rank 10 13960 2782232 0 9 genus 29 0 Chryseobacterium 59732 13082 1 Chryseobacterium camelliae 0 1820 1265445 1 species 1 species 0 Chryseobacterium gallinarum 1324352 1120 no rank 3 2593645 4467 0 1 species Chryseobacterium sp. StRB126 0 1863 878220 1 species Chryseobacterium sp. IHB B 17019 0 855 1721091 2015076 1749 0 Chryseobacterium sp. T16E-39 species 1 1 species 0 Chryseobacterium glaciei 1685010 1264 0 Chryseobacterium piperi 558152 1516 1 species species 1 2866 253 Chryseobacterium indologenes 0 0 2782228 878 1 genus species 1 878 536441 Chryseobacterium taklimakanense 0 Ornithobacterium 0 9871 28250 1 2 genus 7 species 1 28251 9864 0 Ornithobacterium rhinotracheale 1013 403 0 genus 1 species 1 1014 403 0 Weeksella virosa Flavobacteriaceae 0 77772 49546 1 97 family 247 4 genus 3 Dokdonia 0 1582 326319 1 species 1 326320 272 0 Dokdonia donghaensis 0 2615033 1307 2 no rank species 1 313590 349 0 Dokdonia sp. MED134 0 Dokdonia sp. 4H-3-7-5 983548 958 1 species 0 Capnocytophaga 1016 19712 1 15 genus 59 Capnocytophaga ochracea 0 813 1018 1 species 0 7721 2640652 6 no rank 1945657 794 0 Capnocytophaga sp. H2931 species 1 species 1 788 1945658 Capnocytophaga sp. H4358 0 1 species 0 Capnocytophaga sp. oral taxon 878 1316596 3035 species 1 1055 1705617 Capnocytophaga sp. oral taxon 323 0 species 1 1316593 1008 0 Capnocytophaga sp. oral taxon 864 209053 1041 0 Capnocytophaga sp. ChDC OS43 species 1 1019 2086 0 Capnocytophaga sputigena species 1 327575 2856 0 Capnocytophaga leadbetteri species 1 species 1 1659 1848904 Capnocytophaga stomatis 0 1 species Capnocytophaga canimorsus 0 1418 28188 1 species Capnocytophaga haemolytica 0 1222 45243 Capnocytophaga cynodegmi 0 1193 28189 1 species species 1 685 1017 Capnocytophaga gingivalis 0 5 genus 4 0 Tenacibaculum 104267 3257 1 584609 1501 0 Tenacibaculum jejuense species 1 586 1850252 Tenacibaculum todarodis 0 species 1 Tenacibaculum maritimum 0 589 107401 1 species 1 species Tenacibaculum dicentrarchi 0 577 669041 111500 1548 0 genus 2 1 species 0 Muricauda lutaonensis 516051 527 species 1 1021 111501 Muricauda ruestringensis 0 0 216431 438 1 genus 313588 438 0 Croceibacter atlanticus species 1 1 0 Myroides 76831 3339 58 5 genus 0 1488 2642485 2 no rank 1 species Myroides sp. A21 0 811 1583100 species 1 677 1458492 Myroides sp. ZB35 0 species 1 76832 864 0 Myroides odoratimimus 929 480520 Myroides profundi 0 species 1 153265 818 0 genus 1 species 1 101385 818 0 Aequorivita sublithincola 2 5 genus 1 0 Gramella 292691 5219 Gramella flava 0 1210 1486245 1 species Gramella sp. LPB0144 0 1374 1913577 1 species 1203 411153 Gramella forsetii 0 species 1 1 species 0 Gramella sp. SH35 2126553 1430 0 719 261827 1 genus 1 species 0 Algibacter alginicilyticus 1736674 719 417127 1510 0 genus 1 1 species Zunongwangia profunda 0 1510 398743 0 389486 503 1 genus no rank 1 503 2648869 0 species 1 1453352 503 0 Sediminicola sp. YIK13 386 336276 0 genus 1 no rank 1 386 2615019 0 2058135 386 0 Olleya sp. Bg11-27 species 1 523 1649495 0 genus 1 0 523 2622645 1 no rank 523 1936081 Seonamhaeicola sp. S2-3 0 species 1 1922 291183 0 genus 3 1019 1486034 Lacinutrix venerupis 0 species 1 2 no rank 0 2647285 903 983544 496 0 Lacinutrix sp. 5H-3-7-4 species 1 0 Lacinutrix sp. Bg11-31 2057808 407 1 species genus 1 1176327 527 0 2636237 527 0 no rank 1 species 1 2094025 527 0 Aureitalea sp. RR4-38 1 genus 0 1196 1518147 1 species 0 Wenyingzhuangia fucanilytica 1790137 1196 1 genus 0 889 2700084 Lutibacter sp. LPB0138 0 889 1850246 1 species 1 genus 5 1 3628 252356 Maribacter 0 3032 2615042 0 no rank 3 Maribacter sp. HTCC2170 0 622 313603 1 species 0 Maribacter sp. 1_2014MBL_MicDiv 1644130 1064 1 species 0 Maribacter sp. T28 1836467 1346 1 species 595 1178778 Maribacter cobaltidurans 0 species 1 genus 5 4 363408 1808 0 Nonlabens 1 319236 355 0 Nonlabens sediminis species 1 1028 2615035 0 no rank 2 species 1 620 2058134 Nonlabens sp. MB-3u-79 0 408 1476901 Nonlabens sp. MIC269 0 species 1 421 328515 Nonlabens dokdonensis 0 species 1 1053 393005 0 genus 1 Tamlana sp. UJ94 0 1053 2069432 1 species 2 genus 1 0 Robiginitalea 252306 621 1 620 252307 Robiginitalea biformata 0 species 1 0 1204360 477 1 genus 0 Siansivirga zeaxanthinifaciens 762954 477 1 species 0 61432 2090 2 no rank 531844 1052 0 Flavobacteriaceae bacterium 3519-10 species 1 1038 1150389 Flavobacteriaceae bacterium UJ101 0 species 1 genus 4 3 104264 2353 0 Cellulophaga 1 59600 481 0 Cellulophaga algicola species 1 1058 979 Cellulophaga lytica 0 species 1 Cellulophaga baltica 0 811 76594 1 species genus 1 83612 418 0 57029 418 0 Psychroflexus torquis species 1 1 972 112040 Zobellia 0 1 genus 2 species 1 971 63186 Zobellia galactanivorans 0 genus 1 358023 803 0 1 species 0 Lutibacter profundi 1622118 803 genus 1 178469 897 0 Arenibacter algicola 0 897 616991 1 species 1 3 genus 1 0 Winogradskyella 286104 1232 1231 2615021 0 no rank 2 1936080 631 0 Winogradskyella sp. J14-2 species 1 0 Winogradskyella sp. PG-2 754409 600 1 species 237 9561 0 Flavobacterium 1 genus 9 24 1 species 0 Flavobacterium crassostreae 1763534 460 1492737 1453 0 Flavobacterium gilvum species 1 1 species Flavobacterium indicum 0 392 312277 1 species 0 Flavobacterium columnare 996 1033 Flavobacterium commune 0 1815 1306519 1 species 1 species 0 Flavobacterium psychrophilum 96345 591 1 species 0 Flavobacterium branchiophilum 55197 592 3201 986 Flavobacterium johnsoniae 0 species 1 genus 2 531 225842 0 2644710 531 0 no rank 2 species 1 294 1336795 Formosa sp. Hel3_A1_48 0 1 species 0 Formosa sp. Hel1_33_131 1336794 237 992 1209327 0 genus 1 species 1 1803846 992 0 Flavivirga eckloniae 0 143222 862 1 genus 862 2633436 0 no rank 1 species 1 862 1729720 Salegentibacter sp. T436 0 6 genus 6 0 Polaribacter 52959 5139 1 1 species 0 Polaribacter vadi 1774273 1010 1113 996801 Polaribacter reichenbachii 0 species 1 3 no rank 0 196858 3010 869 2058137 Polaribacter sp. ALD11 0 species 1 species 1 1529069 1357 0 Polaribacter sp. BM10 species 1 784 313598 Polaribacter sp. MED152 0 9 family 0 39782 1383 1 9 genus 1 Blattabacterium 0 1383 34098 1080 2647581 0 no rank 6 Blattabacterium sp. (Nauphoeta cinerea) 0 263 1316444 1 species Blattabacterium sp. (Blattella germanica) 0 100 624186 1 species 1 species 0 Blattabacterium sp. (Blatta orientalis) 367806 55 1 species 0 Blattabacterium sp. (Blaberus giganteus) 1186051 60 species 1 88 367488 Blattabacterium sp. (Periplaneta americana) 0 0 Blattabacterium sp. (Mastotermes darwiniensis) 39768 514 1 species Blattabacterium cuenoti 0 154 1653831 1 species species 1 148 164514 Blattabacterium punctulatus 0 3 no rank 0 126 313602 1 genus 2 1 36 1940138 Candidatus Walczuchella 0 1 species Candidatus Walczuchella monophlebidarum 0 35 1415657 genus 1 90 336809 0 species 1 336810 90 0 Candidatus Sulcia muelleri 1333713 1105 0 family 2 1 1105 267986 Owenweeksia 0 1 genus 2 1 species Owenweeksia hongkongensis 0 1104 253245 2 family 0 1853230 839 genus 2 2 332102 839 0 Fluviicola 1 Fluviicola taffensis 0 837 191579 1 species 1 family 0 1755828 225 0 225 1755829 1 genus 1 species Ichthyobacterium seriolicida 0 225 242600 1 Saprospiria 0 1945 1937959 1 6 class 1 Saprospirales 0 1944 1936988 2 5 order 1937961 1402 0 family 2 2 genus 5 Haliscomenobacter 0 1402 2349 1 1397 2350 Haliscomenobacter hydrossis 0 species 1 2 family 0 540 89374 1 2 genus 1 Saprospira 0 540 1007 1008 539 0 Saprospira grandis species 1 class 69 66 4630339 200643 Bacteroidia 0 1 4621611 171549 Bacteroidales 0 1 order 58 262 0 37556 1853231 2 family genus 2 16 37556 283168 Odoribacter 0 1 1 species Odoribacter splanchnicus 0 37540 28118 2005523 5225 0 family 2 0 Paludibacter 346096 5225 1 2 genus 1 1 species 0 Paludibacter propionicigenes 185300 5224 3 family 4 1 171551 9269 0 Porphyromonadaceae 3 genus 10 Porphyromonas 0 9266 836 1 Porphyromonas gingivalis 0 7866 837 1 species 1 species Porphyromonas asaccharolytica 0 1390 28123 29 11 family 1 Prevotellaceae 0 164425 171552 genus 10 162 838 164396 0 Prevotella 1 species 1 8457 589436 Prevotella fusca 0 1 species Prevotella denticola 0 8808 28129 species 1 13377 839 Prevotella ruminicola 0 species 1 7771 28132 Prevotella melaninogenica 0 8290 52227 Prevotella dentalis 0 species 1 no rank 1 4469 2638335 0 0 Prevotella sp. oral taxon 299 652716 4469 1 species Prevotella enoeca 0 4802 76123 1 species species 1 28131 103573 0 Prevotella intermedia 4687 1177574 Prevotella jejuni 0 species 1 10 family 5 1 171550 44079 0 Rikenellaceae 1956 1611681 Mucinivorans 0 1 genus 2 4 1952 1433126 Mucinivorans hirudinis 0 species 1 1 0 Alistipes 239759 42113 6 2 genus species 1 214856 42107 0 Alistipes finegoldii 11 family 33 0 Bacteroidaceae 815 1188510 1 0 Bacteroides 816 1188477 1 10 genus 41035 species 1 177244 818 Bacteroides thetaiotaomicron 0 species 1 150898 1796613 Bacteroides caecimuris 0 1 species Bacteroides caccae 0 82596 47678 species 1 205827 28116 Bacteroides ovatus 0 Bacteroides helcogenes 0 72023 290053 1 species species 1 28119 53359 0 Bacteroides zoogleoformans 0 Bacteroides fragilis 817 250657 1 species 55201 28113 Bacteroides heparinolyticus 0 species 1 1 species 0 Bacteroides cellulosilyticus 246787 99637 Dysgonamonadaceae 0 17095 2005520 1 6 family 5 4451 1784836 Fermentimonas 0 1 genus 2 2 1562970 4449 0 Fermentimonas caenicola species 1 1 genus 0 4810 307628 4810 1642646 Petrimonas mucosa 0 species 1 6 genus 2 1 294702 7829 0 Proteiniphilum species 1 7823 1642647 Proteiniphilum saccharofermentans 0 7 family 24 0 Tannerellaceae 2005525 282128 1 3 genus 18 Tannerella 0 19100 195950 1 species 1 28112 14354 0 Tannerella forsythia 0 2620507 4728 1 no rank 0 Tannerella sp. oral taxon HOT-286 712710 4728 1 species genus 3 99 375288 263004 0 Parabacteroides 1 0 2649774 203994 1 no rank 1 species 0 Parabacteroides sp. CT06 2025876 203994 1 species 0 Parabacteroides distasonis 823 58911 0 1526 185291 1 no rank 1 species Bacteroidales bacterium CF 0 1526 1400053 7 family 3 1 2005519 82856 0 Barnesiellaceae 0 Barnesiella 397864 82849 1 2 genus 15 species 1 82834 397865 Barnesiella viscericola 0 no rank 5 2788680 333046 0 1 2 genus 1 Candidatus Azobacteroides 0 1289 511434 1 species 0 Candidatus Azobacteroides pseudotrichonymphae 511435 1288 3 genus 0 909656 2787391 Bacteroides salanitronis 0 168082 376805 1 species 1 species 0 Bacteroides dorei 357276 482803 821 2136506 0 Bacteroides vulgatus species 1 Marinilabiliales 0 8662 1970189 1 10 order 3 1251 1970190 Salinivirgaceae 0 1 family 2 1 1970191 1250 0 genus 1 0 Salinivirga cyanobacteriivorans 1307839 1250 1 species 0 Marinifilaceae 1573805 1473 1 2 family 1 genus 1 1472 2060722 0 1472 1717717 Marinifilaceae bacterium SPP2 0 species 1 family 2 1 3824 1471398 Prolixibacteraceae 0 1 0 1471399 3823 1 genus 3823 1168034 Draconibacterium orientale 0 species 1 3 family 6 Marinilabiliaceae 0 2111 558415 1 2 genus 2 1 1193324 2105 0 Alkalitalea 1 species Alkalitalea saponilacus 0 2103 889453 1876 1100069 Bacteroidetes Order II. Incertae sedis 0 1 order 7 21 0 Rhodothermaceae 563843 1855 1 6 family 12 604 1196022 0 no rank 1 1779382 604 0 Rhodothermaceae bacterium RA species 1 2 genus 1 Salinibacter 0 425 146918 1 1 species Salinibacter ruber 0 424 146919 3 genus 2 1 29548 814 0 Rhodothermus 811 29549 Rhodothermus marinus 0 species 1 66 52 class 1 0 Cytophagia 768503 40029 291 order 51 1 39963 768507 Cytophagales 0 0 Flammeovirgaceae 200667 3672 1 3 family 1 0 2595 59739 1 genus no rank 1 2595 2637820 0 species 1 1191459 2595 0 Flammeovirga sp. MY04 1 no rank 0 1076 340671 species 1 1076 1257021 Flammeovirgaceae bacterium 311 0 1 0 Cyclobacteriaceae 563798 5245 1 9 family 1 232244 789 0 Belliella 1 genus 2 1 species 0 Belliella baltica 232259 788 3 genus 7 Cyclobacterium 0 2882 68288 1 1746 104 Cyclobacterium marinum 0 species 1 1 species 0 Cyclobacterium amurskyense 320787 1129 1 genus 0 513 246875 1 species 0 Algoriphagus sp. M8-2 1727163 513 1 0 Echinicola 390846 1060 1 2 genus 1 species Echinicola vietnamensis 0 1059 390884 1853232 15327 0 Hymenobacteraceae 1 family 16 27 1 Pontibacter 0 2602 323449 11 3 genus species 1 400092 1416 0 Pontibacter korlensis 1175 388950 Pontibacter akesuensis 0 species 1 4 genus 1 0 Rufibacter 1379908 3686 1 512763 1401 0 Rufibacter tibetensis species 1 2 no rank 0 2284 2639626 1313 1379909 Rufibacter sp. DG15C 0 species 1 species 1 971 1379910 Rufibacter sp. DG31D 0 38 8 genus 1 Hymenobacter 0 9012 89966 no rank 5 2615202 6509 0 1396 1385664 Hymenobacter sp. DG25B 0 species 1 0 Hymenobacter sp. PAMC 26554 1484116 688 1 species 869 1385663 Hymenobacter sp. DG25A 0 species 1 Hymenobacter sp. PAMC 26628 0 1799 1484118 1 species 1 species 0 Hymenobacter sp. APR13 1356852 1757 Hymenobacter swuensis 0 1176 1446467 1 species 1411621 1289 0 Hymenobacter sedentarius species 1 3 family 3 1 1853234 3485 0 Persicobacteraceae 1 2 genus 1 Persicobacter 0 3482 59740 no rank 1 3481 2664020 0 Persicobacter sp. JZB09 0 3481 1085624 1 species 0 354 1501348 3 family 0 Candidatus Cardinium 273135 167 1 2 genus 2 2641185 165 0 no rank 1 species 1 165 249402 Cardinium endosymbiont of Encarsia pergandiella 0 genus 1 281119 187 0 1 species Candidatus Amoebophilus asiaticus 0 187 281120 family 1 2762301 581 0 581 869806 0 genus 1 1 species Marivirga tractuosa 0 581 1006 11 family 13 1 9848 89373 Cytophagaceae 0 5 2 genus 1 Fibrella 0 668 861914 1 no rank 0 663 2620963 663 1834519 Fibrella sp. ES10-3-2-2 0 species 1 5 genus 0 4722 107 Spirosoma rigui 0 1008 564064 1 species Spirosoma aerolatum 0 1132 1211326 1 species 1 species 0 Spirosoma sp. HA7 2057025 889 1 species 0 Spirosoma radiotolerans 1379870 1068 species 1 1178516 625 0 Spirosoma montaniterrae 6 2 genus 1 Dyadobacter 0 1330 120831 Dyadobacter fermentans 0 1324 94254 1 species 1 genus 0 978 1063 1 species Cytophaga hutchinsonii 0 1063 985 0 1439 105 1 genus 1439 106 Runella slithyformis 0 species 1 0 615 319458 1 genus 1 species Leadbetterella byssophila 0 615 316068 1937968 1160 0 Bernardetiaceae 1 family 2 16 1937972 1144 0 genus 1 0 Bernardetia litoralis 999 1144 1 species class 23 23 117747 26577 0 Sphingobacteriia 1 Sphingobacteriales 0 26554 200666 1 22 order 62 1 0 Sphingobacteriaceae 84566 26492 22 21 family 1 0 Sphingobacterium 28453 7598 1 6 genus 1079 1010 Sphingobacterium mizutaii 0 species 1 0 2609468 6518 4 no rank 0 Sphingobacterium sp. B29 1933220 1812 1 species 1 species 0 Sphingobacterium sp. G1-14 2003121 1794 1538644 1477 0 Sphingobacterium sp. ML3W species 1 Sphingobacterium sp. 21 0 1435 743722 1 species 1867 1649482 0 genus 1 151895 1867 0 Pseudopedobacter saltans species 1 1 0 Solitalea 929509 1904 1 2 genus 1 species Solitalea canadensis 0 1903 995 1 9207 84567 Pedobacter 0 13 genus 6 0 Pedobacter ginsengisoli 363852 1095 1 species 2089 984 Pedobacter heparinus 0 species 1 1 species 0 Pedobacter cryoconitis 188932 1932 2628915 2202 0 no rank 1 0 Pedobacter sp. PACM 27299 1727164 2202 1 species 430522 1876 0 Pedobacter steynii species 1 1548 84568 0 no rank 1 1 species Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 1548 1986952 Mucilaginibacter 0 4346 423349 1 4 genus 15 Mucilaginibacter sp. BJC16-A31 0 1135 1234841 1 species 0 2617802 1247 1 no rank species 1 1247 1300914 Mucilaginibacter sp. PAMC 26640 0 1 species 0 Mucilaginibacter gotjawali 1550579 1949 1305 1134404 0 phylum 3 0 795747 1305 3 class 3 order 0 795748 1305 586 1334117 0 family 1 genus 1 586 1134403 0 1 species Melioribacter roseus 0 586 1134405 family 2 5 719 795749 Ignavibacteriaceae 0 1 genus 1 714 795750 0 species 1 714 591197 Ignavibacterium album 0 0 142182 947 8 phylum 8 class 4 Gemmatimonadetes 0 947 219685 1 29 order 7 1 219686 943 0 Gemmatimonadales family 6 11 219687 914 0 Gemmatimonadaceae 1 1706036 450 0 Gemmatirosa 1 genus 2 2 861299 448 0 Gemmatirosa kalamazoonesis species 1 Gemmatimonas 0 453 173479 1 3 genus 2 Gemmatimonas phototrophica 0 252 1379270 1 species 173480 199 0 Gemmatimonas aurantiaca species 1 2 phylum 0 456828 226 1 Candidatus Cloacimonas 0 226 456826 4 2 genus Candidatus Cloacimonas acidaminovorans 0 222 456827 1 species 20493 203691 0 phylum 57 1 20493 203692 Spirochaetia 0 50 class 57 11461 136 Spirochaetales 0 1 order 41 202 57 family 23 1 137 8802 0 Spirochaetaceae 12 genus 415 Treponema 0 6227 157 1 1 species 0 Treponema succinifaciens 167 1127 39 160 Treponema pallidum 0 species 1 88058 438 0 Treponema primitia species 1 1 species Treponema paraluiscuniculi 0 40 53435 species 1 953 221027 Treponema putidum 0 1 species Treponema denticola 0 403 158 1 species Treponema caldarium 0 485 215591 1 species Treponema brennaborense 0 663 81028 0 Treponema azotonutricium 150829 410 1 species species 1 477 409322 Treponema pedis 0 777 2638727 0 no rank 1 777 1539298 Treponema sp. OMZ 838 0 species 1 genus 2 2 1911556 448 0 Sediminispirochaeta 1 1 species Sediminispirochaeta smaragdinae 0 446 55206 1 146 605 0 Spirochaeta 1 genus 3 0 Spirochaeta africana 46355 282 1 species species 1 322 154 Spirochaeta thermophila 0 0 395 1616789 1 genus species 1 395 1307761 Salinispira pacifica 0 3 4 genus 1 0 Sphaerochaeta 399320 1070 1 species Sphaerochaeta pleomorpha 0 301 1131707 species 1 509 1131703 Sphaerochaeta globosa 0 1 species 0 Sphaerochaeta coccoides 273376 257 1 family 17 1 2457 1643685 Borreliaceae 0 genus 8 2 1264 138 Borrelia 0 1 1 species Borrelia recurrentis 0 133 44449 Borrelia miyamotoi 0 412 47466 1 species species 1 143 135 0 Borrelia anserina 96 40834 Borrelia duttonii 0 species 1 1 species Borrelia hermsii 0 192 140 Borrelia turicatae 0 156 142 1 species species 1 138 141 Borrelia parkeri 0 64895 1192 0 Borreliella 1 genus 8 39 139 223 0 Borreliella burgdorferi species 1 1 species 0 Borreliella bavariensis 664662 157 species 1 115 29518 Borreliella afzelii 0 species 1 1674146 84 0 Borrelia mayonii species 1 110 64897 Borreliella bissettii 0 species 1 182 62088 Borreliella valaisiana 0 29519 282 0 Borreliella garinii species 1 0 2092 1643688 8 order 3 8 family 1 0 Leptospiraceae 170 2092 genus 1 94 338321 0 1 species Turneriella parva 0 94 29510 1 1995 171 Leptospira 0 1 genus 6 1 species 0 Leptospira interrogans 173 715 1 species Leptospira biflexa 0 480 172 species 1 197 28452 Leptospira alstonii 0 188 28183 Leptospira santarosai 0 species 1 174 414 0 Leptospira borgpetersenii species 1 2 order 7 1 1643686 6890 0 Brachyspirales 1 6888 143786 Brachyspiraceae 0 551 family 6 1 6337 29521 Brachyspira 0 562 genus 5 1 species 0 Brachyspira murdochii 84378 833 species 1 1141 84377 Brachyspira intermedia 0 1 species 0 Brachyspira hyodysenteriae 159 1774 0 Brachyspira pilosicoli 52584 2027 1 species 15160 1783257 0 clade 80 23 phylum 0 7053 74201 4 class 2 0 Methylacidiphilae 1955630 335 1 2 3 order 1 0 Methylacidiphilales 717963 333 family 2 717964 331 0 0 511745 331 2 genus 511746 135 0 Methylacidiphilum infernorum species 1 591154 196 0 Methylacidiphilum fumariolicum species 1 3 class 5 1 4551 203494 Verrucomicrobiae 0 6 order 4 1 48461 4548 0 Verrucomicrobiales 1 0 Akkermansiaceae 1647988 4542 6 3 family 0 239934 4536 2 genus 1679444 899 0 Akkermansia glycaniphila species 1 3637 239935 Akkermansia muciniphila 0 species 1 no rank 2 417295 497 0 species 1 273 2026799 Verrucomicrobia bacterium 0 224 1637999 Verrucomicrobia bacterium IMCC26134 0 species 1 1 class 0 55 134549 genus 1 134550 55 0 no rank 1 2648876 55 0 species 1 1704307 55 0 Candidatus Xiphinematobacter sp. Idaho Grape 11 class 17 0 Opitutae 414999 1615 1 3 order 0 415001 110 1 0 Puniceicoccaceae 415002 110 2 3 family 108 442430 Coraliomargarita 0 1 genus 2 8 species 1 395922 100 0 Coraliomargarita akajimensis order 7 102 1488 415000 Opitutales 0 1 family 6 20 1386 134623 Opitutaceae 0 1 278955 522 0 no rank 1 794903 522 0 Opitutaceae bacterium TAV5 species 1 genus 2 2 574 1961799 Lacunisphaera 0 1 species 1 1838286 572 0 Lacunisphaera limnophila 2 genus 11 Opitutus 0 270 178440 1 1 species Opitutus terrae 0 259 107709 0 134625 193 3 phylum 1921781 193 0 class 3 1 Kiritimatiellales 0 193 1921782 3 3 order 0 190 1921783 2 family 0 Kiritimatiella 1921784 190 1 2 genus 19 0 Kiritimatiella glycovorans 1307763 171 1 species phylum 3 1384 256845 0 1 0 Lentisphaeria 1313211 1384 3 3 class order 2 230 1381 278082 Victivallales 0 1 1 no rank 0 1674876 1151 1151 2094242 Victivallales bacterium CCUG 44730 0 species 1 0 203682 4751 31 phylum 11 class 7 1 666505 1108 0 Phycisphaerae 2483366 828 0 order 2 2 family 0 828 2483367 genus 2 2483368 828 0 species 1 1940790 246 0 Phycisphaerae bacterium L21-RPul-D3 1941349 582 0 Phycisphaerae bacterium ST-PulAB-D4 species 1 1 0 Phycisphaerales 666506 269 5 4 order 1 family 3 1 666507 264 0 Phycisphaeraceae genus 2 2 666508 263 0 Phycisphaera 1 species 1 547188 261 0 Phycisphaera mikurensis 1 0 Planctomycetia 203683 3443 14 22 class 2 order 0 2691355 284 6 family 2 1 1914233 284 0 Gemmataceae 1 genus 0 278 113 1 no rank 0 2622970 278 species 1 1630693 278 0 Gemmata sp. SH-PL17 0 2691356 776 6 order 6 family 5 0 Isosphaeraceae 1763524 776 1 1 1763521 305 0 Paludisphaera 1 genus 2 species 1 1387353 304 0 Paludisphaera borealis 308 127 0 genus 1 1 species Isosphaera pallida 0 308 128 1 0 Singulisphaera 466152 158 3 2 genus species 1 155 466153 Singulisphaera acidiphila 0 54 order 9 1 112 1968 0 Planctomycetales Planctomycetaceae 0 1914 126 1 8 family 13 1649490 256 0 genus 1 1 species 0 Rubinisphaera brasiliensis 119 256 genus 2 1 217 1649480 Planctopirus 0 1 0 Planctopirus limnophila 120 216 1 species 665 118 Planctomyces 0 1 genus 3 5 2 no rank 0 2648843 660 1 species Planctomyces sp. SH-PL62 0 468 1636152 Planctomyces sp. SH-PL14 0 192 1632864 1 species 1936111 763 0 genus 1 763 1891926 Fuerstia marisgermanicae 0 species 1 401 2691354 0 order 4 family 1 125 2691358 0 0 125 1676125 1 genus 0 Thermogutta terrifontis 1331910 125 1 species 3 family 0 2691357 276 1 2 genus 1 0 Rhodopirellula 265488 190 0 Rhodopirellula baltica 265606 189 1 species genus 1 86 123 0 species 1 125 86 0 Pirellula staleyi 2 class 0 2517206 200 2 order 2 0 Candidatus Brocadiales 1127829 200 1 198 1127830 0 family 1 genus 1 198 380738 0 1 species 0 Candidatus Kuenenia stuttgartiensis 174633 198 phylum 20 1779 204428 0 1 204429 1779 0 Chlamydiia 2 class 20 51291 932 0 order 12 932 809 0 family 12 no rank 12 1113537 932 0 932 810 Chlamydia 0 1 genus 12 1 species 1 813 36 0 Chlamydia trachomatis species 1 105 83558 Chlamydia pneumoniae 0 1 species 0 Chlamydia abortus 83555 75 83554 163 0 Chlamydia psittaci species 1 0 Chlamydia pecorum 85991 39 1 species 1 species 0 Chlamydia muridarum 83560 103 201 1457153 Chlamydia gallinacea 0 species 1 species 1 83559 54 0 Chlamydia suis 1 species Chlamydia caviae 0 38 83557 species 1 48 1457141 Chlamydia avium 0 0 Chlamydia felis 83556 69 1 species 1 845 1963360 Parachlamydiales 0 65 order 7 0 257 92712 2 family Simkania 0 257 34093 1 2 genus 3 species 1 254 83561 Simkania negevensis 0 420 92713 0 family 2 192 83551 0 genus 1 0 Parachlamydia acanthamoebae 83552 192 1 species 282132 228 0 genus 1 species 1 228 389348 Candidatus Protochlamydia naegleriophila 0 family 2 92714 103 0 1 103 71666 Waddlia 0 3 genus 2 100 71667 Waddlia chondrophila 0 species 1 clade 1635 4632416 1783272 0 phylum 5 67819 286 0 1663419 286 0 Fimbriimonadia 1 class 5 1 1 4 order 1 Fimbriimonadales 0 285 1663425 Fimbriimonadaceae 0 284 1663426 1 3 family 2 Fimbriimonas 0 282 1005038 1 2 genus 2 species 1 1005039 280 0 Fimbriimonas ginsengisoli 99 phylum 0 20293 544448 1 31969 18398 0 Mollicutes 56 class 96 8618 186328 Entomoplasmatales 0 1 order 39 8 0 Spiroplasmataceae 2131 5977 1 24 family 9 99 23 genus 1 0 Spiroplasma 2132 5968 216946 466 0 Spiroplasma turonicum species 1 1 species Spiroplasma helicoides 0 150 216938 315358 374 0 Spiroplasma eriocheiris species 1 1 species 0 Spiroplasma monobiae 2136 104 283 216944 Spiroplasma sabaudiense 0 species 1 species 1 2137 156 0 Spiroplasma apis species 1 362 216937 Spiroplasma floricola 0 1 species 0 Spiroplasma mirum 2144 374 298 2139 Spiroplasma clarkii 0 species 1 species 1 2145 252 0 Spiroplasma taiwanense 2 no rank 0 2637901 500 species 1 250 1898044 Spiroplasma sp. TU-14 0 0 Spiroplasma sp. NBRC 100390 1914410 250 1 species Spiroplasma atrichopogonis 0 377 1114980 1 species species 1 243 2133 Spiroplasma citri 0 216933 242 0 Spiroplasma chrysopicola species 1 Spiroplasma diminutum 0 323 216936 1 species 1 species 0 Spiroplasma cantharicola 362837 258 Spiroplasma corruscae 0 233 216934 1 species 47834 216 0 Spiroplasma kunkelii species 1 1 species 0 Spiroplasma litorale 216942 151 species 1 270 216935 Spiroplasma culicicola 0 1 species 0 Spiroplasma syrphidicola 216945 237 family 14 11 2633 33925 Entomoplasmataceae 0 1 8 genus 19 0 Mesoplasma 46239 1845 1 Mesoplasma entomophilum 0 230 2149 1 species species 1 2151 517 0 Mesoplasma florum 118 216427 Mesoplasma chauliocola 0 species 1 138853 378 0 Mesoplasma lactucae species 1 1 species 0 Mesoplasma coleopterae 324078 130 1 species Mesoplasma tabanidae 0 137 219745 0 Mesoplasma syrphidae 225999 316 1 species 0 Entomoplasma 46238 777 1 5 genus 35 Entomoplasma luminosum 0 217 214888 1 species species 1 215578 279 0 Entomoplasma somnilux species 1 66 74700 Entomoplasma freundtii 0 species 1 81459 180 0 Entomoplasma melaleucae 4 order 13 1 2696 186329 Acholeplasmatales 0 8 family 12 1 2692 2146 Acholeplasmataceae 0 0 Acholeplasma 2147 1793 1 5 genus 2 Acholeplasma brassicae 0 421 61635 1 species 38986 593 0 Acholeplasma palmae species 1 1 species Acholeplasma oculi 0 382 35623 Acholeplasma laidlawii 0 395 2148 1 species 1 Candidatus Phytoplasma 0 891 33926 1 6 genus 0 85632 97 1 species group 59748 97 0 Candidatus Phytoplasma australiense species 1 0 85630 66 1 species group 1 species 0 Candidatus Phytoplasma mali 37692 66 species group 3 727 85620 0 species 1 289 100379 Onion yellows phytoplasma 0 202462 365 0 Maize bushy stunt phytoplasma species 1 73 229545 Aster yellows witches'-broom phytoplasma 0 species 1 5 43 order 1 Mycoplasmatales 0 7028 2085 23 family 42 1 2092 7023 0 Mycoplasmataceae genus 12 2273 2767358 0 134 2107 Mycoplasma pulmonis 0 species 1 2115 196 0 Mycoplasma fermentans species 1 158 2110 Mycoplasma agalactiae 0 species 1 species 1 29555 199 0 Mycoplasma canis 1 species 0 Mycoplasma synoviae 2109 109 29553 236 0 Mycoplasma bovirhinis species 1 0 Mycoplasma cynos 171284 194 1 species 28903 322 0 Mycoplasma bovis species 1 species 1 84 2113 Mycoplasma californicum 0 species 1 160 2094 Mycoplasma arginini 0 2112 241 0 Mycoplasma bovigenitalium species 1 species 1 240 48003 Mycoplasma pullorum 0 2129 269 0 genus 2 190 134821 Ureaplasma parvum 0 species 1 0 Ureaplasma urealyticum 2130 79 1 species 27 genus 61 0 Mycoplasma 2093 4458 1 species 1 2123 193 0 Mycoplasma putrefaciens 27 2097 Mycoplasma genitalium 0 species 1 Mycoplasma hominis 0 455 2098 1 species 0 Mycoplasma flocculare 2128 141 1 species species 1 92 29554 Mycoplasma canadense 0 26 29501 Mycoplasma haemofelis 0 species 1 Mycoplasma suis 0 66 57372 1 species species 1 103 2111 Mycoplasma arthritidis 0 Mycoplasma penetrans 0 221 28227 1 species species 1 50052 233 0 Mycoplasma crocodyli 0 1188 656088 3 species group 1 species 0 Mycoplasma leachii 2105 222 0 Mycoplasma capricolum 2095 402 1 species 1 species 0 Mycoplasma mycoides 2102 564 species 1 2099 140 0 Mycoplasma hyopneumoniae 0 Mycoplasma pneumoniae 2104 57 1 species 136241 9 0 Mycoplasma haemocanis species 1 species 1 51365 131 0 Mycoplasma yeatsii 0 Mycoplasma parvum 984991 126 1 species species 1 219 2100 Mycoplasma hyorhinis 0 212 2118 Mycoplasma mobile 0 species 1 1 species Mycoplasma dispar 0 143 86660 28 171632 Mycoplasma ovis 0 species 1 0 147 2683645 1 no rank 1749074 147 0 Mycoplasma sp. (ex Biomphalaria glabrata) species 1 species 1 65123 9 0 Mycoplasma wenyonii 1 species Mycoplasma gallisepticum 0 273 2096 Mycoplasma bovoculi 0 158 45362 1 species 1136 713063 0 no rank 2 1 species Tenericutes bacterium MZ-XQ 0 586 1911683 0 Tenericutes bacterium MO-XQ 1911684 550 1 species 1 no rank 0 2799557 759 0 1912503 759 1 genus 1 no rank 0 759 2624196 Candidatus Izimaplasma sp. HR1 0 759 1541959 1 species 4396 200795 0 phylum 41 7 class 1 0 Thermomicrobia 189775 318 1 85000 170 0 subclass 2 0 85001 170 2 order 0 170 255728 2 suborder family 2 85002 170 0 170 2056 Sphaerobacter 0 1 genus 2 2 species 1 168 2057 Sphaerobacter thermophilus 0 1 189776 147 0 Thermomicrobiales 1 order 4 3 family 1 Thermomicrobiaceae 0 146 189777 1 0 Thermomicrobium 499 145 1 2 genus 1 species 1 500 144 0 Thermomicrobium roseum class 9 32061 1094 0 3 9 order 1 Chloroflexales 0 1094 32064 1508595 475 0 suborder 3 23 family 3 1 1508635 475 0 Roseiflexaceae 120961 452 0 genus 2 species 1 137 120962 Roseiflexus castenholzii 0 1 no rank 0 315 2609473 0 Roseiflexus sp. RS-1 357808 315 1 species 0 1508594 616 5 suborder 1 0 Chloroflexaceae 1106 616 6 5 family 1 genus 4 1 1107 610 0 Chloroflexus species 1 152260 143 0 Chloroflexus aggregans 233 species 2 1 466 1108 Chloroflexus aurantiacus 0 Chloroflexus sp. Y-400-fl 0 233 480224 1 strain class 4 2 224 475962 Caldilineae 0 1 1 475963 222 0 Caldilineales 3 order 3 219 475964 Caldilineaceae 0 1 family 2 6 1 genus 0 213 233191 species 1 213 133453 Caldilinea aerophila 0 1 class 7 1 292625 1009 0 Anaerolineae 6 order 5 Anaerolineales 0 1008 292629 1 5 family 9 Anaerolineaceae 0 1003 292628 1 0 233189 385 1 genus 1 species 0 Anaerolinea thermophila 167964 385 1 genus 2 1 2019482 176 0 Brevefilum 1 species Brevefilum fermentans 0 175 1986204 1 no rank 0 433 1324991 433 1889813 Anaerolineaceae bacterium oral taxon 439 0 species 1 0 Dehalococcoidia 301297 1121 1 9 class 6 genus 3 4 670486 576 0 Dehalogenimonas 1 species 1 305 552810 Dehalogenimonas lykanthroporepellens 0 0 Dehalogenimonas formicexedens 1839801 267 1 species 1 Dehalococcoidales 0 539 1202465 1 5 order family 4 2 1202464 538 0 Dehalococcoidaceae 1 3 3 genus 1 0 Dehalococcoides 61434 536 0 Dehalococcoides mccartyi 61435 453 1 species 0 237581 80 1 no rank 1522671 80 0 Dehalococcoides sp. UCH007 species 1 1 630 1382928 Ardenticatenia 0 35 class 5 0 Ardenticatenales 1382929 595 1 4 order 59 1 Ardenticatenaceae 0 536 1382930 4 3 family 1988031 532 0 Candidatus Promineofilum 1 genus 2 1 1 species Candidatus Promineofilum breve 0 531 1806508 0 1297 6867 35 phylum 188787 6867 0 Deinococci 1 class 35 19 23 order 15 1 4542 118964 Deinococcales 0 183710 4519 0 Deinococcaceae 1 family 14 48 genus 13 38 1298 4471 0 Deinococcus 1 species 1 502394 449 0 Deinococcus gobiensis species 1 55148 588 0 Deinococcus proteolyticus 1 species 0 Deinococcus maricopensis 309887 284 310783 259 0 Deinococcus deserti species 1 0 Deinococcus radiodurans 1299 424 1 species Deinococcus soli Cha et al. 2016 0 472 1309411 1 species 2623546 255 0 no rank 1 0 Deinococcus sp. NW-56 2080419 255 1 species 1 species Deinococcus peraridilitoris 0 262 432329 species 1 464 1182571 Deinococcus swuensis 0 species 1 284 68909 Deinococcus geothermalis 0 1182568 333 0 Deinococcus puniceus species 1 0 Deinococcus actinosclerus 1768108 359 1 species 2 order 0 151 2762275 0 151 332247 2 family 332248 151 0 Truepera 1 genus 2 11 140 332249 Truepera radiovictrix 0 species 1 17 order 38 Thermales 0 2155 68933 1 1 188786 2117 0 Thermaceae 6 family 16 genus 3 1 65551 464 0 Meiothermus 1 277 184 0 Meiothermus ruber species 1 1 species Meiothermus silvanus 0 279 52022 2 genus 4 Marinithermus 0 123 186191 1 species 1 186192 119 0 Marinithermus hydrothermalis 0 Thermus 270 1089 1 8 genus 40 species 1 95 456163 Thermus parvatiensis 0 no rank 1 160 2619321 0 Thermus sp. CCB_US3_UF1 0 160 1111069 1 species 0 Thermus thermophilus 274 296 1 species 0 Thermus oshimai 56957 182 1 species Thermus aquaticus 0 118 271 1 species 137 37636 Thermus scotoductus 0 species 1 1 species 0 Thermus brockianus 56956 61 208447 435 0 Oceanithermus 1 genus 2 1 species 1 434 187137 Oceanithermus profundus 0 no rank 1 141 1859062 0 0 141 262406 1 genus 1 species 0 Thermobaculum terrenum 166501 141 104 phylum 697 1 1239 4234489 0 Firmicutes 1 1737404 9383 0 Tissierellia 4 class 16 8713 1737405 Tissierellales 0 1 order 13 37 family 10 1166 7380 1570339 Peptoniphilaceae 0 1 165779 1437 0 Anaerococcus 1 genus 3 1 species 1 862 33034 Anaerococcus prevotii 0 0 Anaerococcus mediterraneensis 1870984 574 1 species 1 150022 1058 0 Finegoldia 3 genus 2 1260 1055 0 Finegoldia magna species 1 genus 1 1161127 1917 0 Murdochiella vaginalis 0 1917 1852373 1 species 1 genus 0 162289 669 2637196 669 0 no rank 1 1 species Peptoniphilus sp. ING2-D1G 0 669 1912856 0 Parvimonas 543311 1133 1 2 genus 4 Parvimonas micra 0 1129 33033 1 species family 2 3 1296 2042895 Gottschalkiaceae 0 1 genus 1 1293 1505664 0 1 species Gottschalkia acidurici 0 1293 1556 1737407 666 0 no rank 2 666 1582879 Ezakiella 0 1 genus 2 4 1 species Ezakiella massiliensis 0 662 1852374 class 208 89 3508486 186801 Clostridia 0 1 order 3 1 510 485256 Natranaerobiales 0 1 family 2 509 485255 0 2 genus 4 0 Natranaerobius 375928 509 1 1 species 0 Natranaerobius thermophilus 375929 505 5 36 order 1 Thermoanaerobacterales 0 17359 68295 18 family 12 Thermoanaerobacteraceae 0 8688 186814 1 2 genus 2 Carboxydothermus 0 371 129957 1 species 1 129958 369 0 Carboxydothermus hydrogenoformans 1 485 249529 Caldanaerobacter 0 2 genus 2 Caldanaerobacter subterraneus 0 483 911092 1 species genus 2 2 373 140458 Thermacetogenium 0 1 1 species 0 Thermacetogenium phaeum 85874 371 0 Thermoanaerobacter 1754 6824 1 9 genus 162 species 1 593 108150 Thermoanaerobacter italicus 0 1 species 0 Thermoanaerobacter mathranii 583357 658 1065 46354 Thermoanaerobacter wiegelii 0 species 1 2 no rank 0 2636821 1601 869 573062 Thermoanaerobacter sp. X513 0 species 1 species 1 732 399726 Thermoanaerobacter sp. X514 0 species 1 496866 904 0 Thermoanaerobacter pseudethanolicus species 1 29323 904 0 Thermoanaerobacter brockii 1 species 0 Thermoanaerobacter kivui 2325 937 623 42857 0 no rank 2 457 44260 0 genus 1 1 species 0 Moorella thermoacetica 1525 457 0 42837 166 1 genus 0 Ammonifex degensii 42838 166 1 species 0 227387 394 2 family 2 genus 2 Thermodesulfobium 0 394 227388 1 Thermodesulfobium narugense 0 392 184064 1 species 827 543372 0 family 2 1 Mahella 0 827 252965 1 2 genus species 1 826 252966 Mahella australiensis 0 0 Thermoanaerobacterales Family III. Incertae Sedis 543371 7445 1 13 family 18 37 9 genus 1 0 Caldicellulosiruptor 44000 5161 species 1 759 52766 Caldicellulosiruptor lactoaceticus 0 1 species Caldicellulosiruptor kristjanssonii 0 616 52765 1 species 0 Caldicellulosiruptor hydrothermalis 413888 749 Caldicellulosiruptor obsidiansis 0 583 717609 1 species species 1 661 44001 Caldicellulosiruptor saccharolyticus 0 0 Caldicellulosiruptor bescii 31899 558 1 species Caldicellulosiruptor kronotskyensis 0 788 413889 1 species 55205 410 0 Caldicellulosiruptor owensensis species 1 0 Thermoanaerobacterium 28895 2266 1 3 genus 5 29329 647 0 Thermoanaerobacterium xylanolyticum species 1 species 1 1517 1614 0 Thermoanaerobacterium thermosaccharolyticum 0 Halanaerobiales 53433 4419 1 8 order 2 7 4 family 1 Halobacteroidaceae 0 1867 53434 0 455 28186 1 genus 0 Acetohalobium arabaticum 28187 455 1 species genus 2 2 1405 42417 Halobacteroides 0 1 42422 1403 0 Halobacteroides halobius species 1 family 3 2550 972 0 0 618 32636 1 genus species 1 618 31909 Halothermothrix orenii 0 2 genus 0 1932 2330 species 1 656519 676 0 Halanaerobium hydrogeniformans 1256 2331 Halanaerobium praevalens 0 species 1 0 2770089 1084 3 order 2 family 0 489 2770093 3 2 genus 1 0 Thermosediminibacter 291988 489 0 Thermosediminibacter oceani 291990 486 1 species 1 family 0 595 2770092 1 genus 0 499228 595 595 499229 Tepidanaerobacter acetatoxydans 0 species 1 order 157 3797 186802 3485025 0 Clostridiales 1 0 Oscillospiraceae 216572 3889 1 3 family 1 genus 2 10 459786 3888 0 Oscillibacter 1 1 species 0 Oscillibacter valericigenes 351091 3878 10 family 118 Peptostreptococcaceae 0 41826 186804 1 1481960 1100 0 Peptoclostridium 1 genus 2 1 species 1 1731 1099 0 Peptoclostridium acidaminophilum 50 2 genus 1 0 Clostridioides 1870884 35049 species 1 34999 1496 Clostridioides difficile 0 genus 1 1849828 2333 0 species 1 2333 1505 Paeniclostridium sordellii 0 1 genus 0 1041 44259 0 Filifactor alocis 143361 1041 1 species 0 Acetoanaerobium 186831 1189 1 2 genus 2 species 1 1187 1511 Acetoanaerobium sticklandii 0 no rank 1 996 1411023 0 2081703 996 0 Peptostreptococcaceae bacterium oral taxon 929 species 1 1 Ruminococcaceae 0 832932 541000 154 13 family 866 552397 0 no rank 1 1 species 0 [Clostridium] cellulosi 29343 866 14 genus 3 1 23893 1263 Ruminococcus 0 Ruminococcus albus 0 3002 1264 1 species 0 Ruminococcus bicirculans 1160721 20877 1 species 1 no rank 0 2228 2305133 1 species Ruminococcaceae bacterium CPB6 0 2228 1572656 genus 1 5 1890281 Herbivorax 0 1 0 Ethanoligenens 253238 2241 11 2 genus 1 species 0 Ethanoligenens harbinense 253239 2230 946234 13796 0 Flavonifractor 1 genus 2 16 1 species 0 Flavonifractor plautii 292800 13780 1 Faecalibacterium 0 789749 216851 541 2 genus species 1 789208 853 Faecalibacterium prausnitzii 0 Symbiobacteriaceae 0 654 543349 1 3 family 2 1 2 genus 1 Symbiobacterium 0 652 2733 1 species 0 Symbiobacterium thermophilum 2734 651 11 family 0 15961 2304686 1 1978 1508657 Ruminiclostridium 0 55 genus 2 [Clostridium] cellulolyticum 0 1923 1521 1 species 0 2304693 1372 1 genus 84032 1372 0 [Clostridium] thermosuccinogenes species 1 5375 2305130 0 no rank 1 1 species Ruminiclostridium sp. KB18 0 5375 1834198 0 2304691 1090 1 genus species 1 1090 1510 [Clostridium] stercorarium 0 0 1139 1637257 1 genus Mageeibacillus indolicus 0 1139 884684 1 species 606 236752 Fastidiosipila 0 1 genus 2 4 Fastidiosipila sanguinis 0 602 236753 1 species 3 genus 0 2304692 4401 1 species 0 Ruminiclostridium thermocellum 1515 1341 species 1 288965 1830 0 [Clostridium] clariflavum species 1 1230 1677857 Herbivorax saccincola 0 6 family 4 1 10286 186806 Eubacteriaceae 0 1 0 Eubacterium 1730 9331 107 2 genus 1 species Eubacterium limosum 0 9224 1736 0 33951 949 1 genus species 1 33952 949 0 Acetobacterium woodii 31984 939 0 Heliobacteriaceae 1 family 3 2 genus 2 7 2697 937 0 Heliobacterium 1 Heliobacterium modesticaldum 0 930 35701 1 species 12 family 3 1 990719 8142 0 Christensenellaceae 96 2 genus 1 0 Christensenella 990721 8130 0 Christensenella massiliensis 1805714 8034 1 species family 2 68298 639 0 129001 304 0 genus 1 0 Syntrophothermus lipocalidus 86170 304 1 species 335 862 0 genus 1 species 1 863 335 0 Syntrophomonas wolfei 27 family 39 0 Peptococcaceae 186807 14814 1 1 3364 36853 Desulfitobacterium 0 10 genus 5 Desulfitobacterium hafniense 0 1521 49338 1 species species 1 233055 675 0 Desulfitobacterium dichloroeliminans 142877 625 0 Desulfitobacterium metallireducens species 1 species 1 533 36854 Desulfitobacterium dehalogenans 0 1031 51514 0 genus 1 1 species Dehalobacterium formicoaceticum 0 1031 51515 668 51196 0 genus 1 51197 668 0 Syntrophobotulus glycolicus species 1 1562 2408 0 Desulfotomaculum 1 genus 5 15 0 Desulfotomaculum ferrireducens 1833852 582 1 species species 1 635 1564 Desulfotomaculum ruminis 0 1 species Desulfotomaculum reducens 0 746 59610 species 1 1565 430 0 Desulfotomaculum nigrificans 14 genus 4 1 2642 56112 Dehalobacter 0 species 1 849 55583 Dehalobacter restrictus 0 1779 2635733 0 no rank 2 1 species Dehalobacter sp. CF 0 933 1131462 species 1 1147129 846 0 Dehalobacter sp. DCA 1 0 Candidatus Desulforudis 471826 263 3 2 genus 0 Candidatus Desulforudis audaxviator 471827 260 1 species 621 2282740 0 genus 1 Desulfotomaculum gibsoniae 0 621 102134 1 species 0 Thermincola 278993 526 1 2 genus 3 species 1 863643 523 0 Thermincola potens Desulfosporosinus 0 2631 79206 1 4 genus 9 855 1563 Desulfosporosinus orientis 0 species 1 831 79209 Desulfosporosinus meridiei 0 species 1 species 1 936 885581 Desulfosporosinus acidiphilus 0 0 2282742 621 1 genus 1 species 0 Desulfotomaculum acetoxidans 58138 621 10 no rank 0 38602 538999 genus 2 111 10976 1392389 Intestinimonas 0 1 0 Intestinimonas butyriciproducens 1297617 10865 1 species family 4 4 543314 2385 0 Clostridiales Family XIII. Incertae Sedis 1 genus 2 1 86331 977 0 Mogibacterium 1 species 1 114527 976 0 Mogibacterium diversum 0 [Eubacterium] sulci 143393 1404 1 species 1 674 539000 Clostridiales Family XVII. Incertae Sedis 0 3 family 3 5 2 genus 1 0 Thermaerobacter 73918 671 73919 666 0 Thermaerobacter marianensis species 1 24567 2717089 0 genus 1 Mordavella sp. Marseille-P3756 0 24567 2086584 1 species 1 Clostridiaceae 0 105895 31979 123 41 family 341 genus 30 1 100252 1485 Clostridium 0 1 species 0 Clostridium argentinense 29341 2212 1 species 0 Clostridium tetani 1513 2754 Clostridium scatologenes 0 3143 1548 1 species 1 species Clostridium novyi 0 1558 1542 1 species Clostridium formicaceticum 0 1299 1497 Clostridium bornimense 0 2568 1216932 1 species 4882 1492 Clostridium butyricum 0 species 1 1 species 0 Clostridium autoethanogenum 84023 2196 species 1 2090 1509 Clostridium sporogenes 0 Clostridium kluyveri 0 3054 1534 1 species 1972 1519 Clostridium tyrobutyricum 0 species 1 217159 2482 0 Clostridium carboxidivorans species 1 species 1 1493 3257 0 Clostridium cellulovorans 11516 2614128 0 no rank 2 1042156 9608 0 Clostridium sp. SY8519 species 1 755731 1908 0 Clostridium sp. BNL1100 species 1 1520 5634 0 Clostridium beijerinckii species 1 1 species 0 Clostridium baratii 1561 4101 0 Clostridium saccharobutylicum 169679 2902 1 species species 1 2186 1538 Clostridium ljungdahlii 0 Clostridium perfringens 0 6115 1502 1 species 1 species Clostridium aceticum 0 945 84022 1501 4286 0 Clostridium pasteurianum species 1 2350 394958 Clostridium taeniosporum 0 species 1 species 1 14003 1491 Clostridium botulinum 0 2085 238834 Clostridium estertheticum 0 species 1 1 species 0 Clostridium acetobutylicum 1488 1703 36745 4356 0 Clostridium saccharoperbutylacetonicum species 1 0 Clostridium chauvoei 46867 2248 1 species 0 Clostridium cochlearium 1494 2014 1 species genus 1 1981033 55 0 Mordavella 2 genus 2 1 390805 2023 0 Geosporobacter species 1 2021 1424294 Geosporobacter ferrireducens 0 genus 4 2 49082 1652 0 Candidatus Arthromitus 1 2638829 1650 0 no rank 3 1508644 483 0 Candidatus Arthromitus sp. SFB-mouse-NL species 1 518 49118 Candidatus Arthromitus sp. SFB-mouse 0 species 1 1 species Candidatus Arthromitus sp. SFB-rat-Yit 0 649 1041504 1 1790 114627 Alkaliphilus 0 1 genus 3 Alkaliphilus oremlandii 0 820 461876 1 species 969 208226 Alkaliphilus metalliredigens 0 species 1 708 26 family 1 Lachnospiraceae 0 2406649 186803 2719231 14567 0 genus 1 species 1 84030 14567 0 [Clostridium] saccharolyticum 176 genus 4 1 1506553 54942 0 Lachnoclostridium Lachnoclostridium phocaeense 0 26766 1871021 1 species 1 no rank 0 20469 2608895 1834196 20469 0 Lachnoclostridium sp. YL32 species 1 1 species Lachnoclostridium phytofermentans 0 7531 66219 4200 698776 0 genus 1 4200 29360 Cellulosilyticum lentocellum 0 species 1 2 no rank 0 1634376 186928 species 1 1627870 39491 [Eubacterium] rectale 0 1 species Lachnospiraceae bacterium oral taxon 500 0 6506 712991 4191 1663717 Herbinix 0 1 genus 2 1 Herbinix luporum 0 4190 1679721 1 species 0 Roseburia 841 190967 1 2 genus 45 0 Roseburia hominis 301301 190922 1 species 2719313 43409 0 genus 1 208479 43409 0 [Clostridium] bolteae species 1 2 genus 1 Anaerotignum 0 2855 2039240 1 2854 28446 Anaerotignum propionicum 0 species 1 1 0 Anaerostipes 207244 109114 28 2 genus 1 species Anaerostipes hadrus 0 109086 649756 3 genus 46 Blautia 0 81229 572511 1 no rank 1 2648079 34307 0 Blautia sp. YL58 0 34307 1796616 1 species 1322 46876 0 Blautia hansenii species 1 28050 184012 0 genus 1 species 1 39485 184012 0 [Eubacterium] eligens 62293 2569097 0 genus 1 39488 62293 0 [Eubacterium] hallii species 1 16 3 genus 1 0 Butyrivibrio 830 19786 1 species 0 Butyrivibrio proteoclasticus 43305 9893 species 1 9877 185008 Butyrivibrio hungatei 0 no rank 2 33974 400 0 0 Ndongobacter 1930845 400 1 2 genus 2 398 1871025 Ndongobacter massiliensis 0 species 1 1 Bacilli 0 339251 91061 178 423 class order 260 261 1385 193020 0 Bacillales 1 0 186824 495 3 family 11 2 genus 1 Novibacillus 0 493 1677050 0 Novibacillus thermophilus 1471761 482 1 species genus 1 2 292635 Laceyella 0 12860 186818 Planococcaceae 0 1 family 27 50 1 2 genus 1 Rummeliibacillus 0 706 648802 0 Rummeliibacillus stabekisii 241244 705 1 species 196 genus 12 1 1372 5415 0 Planococcus 718 192421 Planococcus maritimus 0 species 1 0 Planococcus donghaensis 414778 640 1 species species 1 1302659 377 0 Planococcus sp. L10.15 410 1374 Planococcus kocurii 0 species 1 species 1 491 200991 Planococcus rifietoensis 0 1 species 0 Planococcus halocryophilus 1215089 437 0 Planococcus faecalis 1598147 482 1 species 484 1038856 Planococcus plakortidis 0 species 1 0 739 2662419 2 no rank species 1 2058136 391 0 Planococcus sp. MB-3u-03 1 species 0 Planococcus sp. PAMC 21323 1526927 348 species 1 161360 441 0 Planococcus antarcticus 1 0 Kurthia 1649 848 1 2 genus 847 2644826 0 no rank 1 Kurthia sp. 11kri321 0 847 1750719 1 species 2 genus 2 1 1006 157226 Jeotgalibacillus 0 1508404 1004 0 Jeotgalibacillus malaysiensis species 1 2 3 genus 1 0 Solibacillus 648800 1960 1 species 0 Solibacillus silvestris 76853 1255 1 no rank 0 703 2637870 Solibacillus sp. R5-41 0 703 2048654 1 species 5 genus 9 Sporosarcina 0 2875 1569 1 1543 1571 Sporosarcina ureae 0 species 1 no rank 2 847 2647733 0 1 species Sporosarcina sp. P33 0 552 1930764 1 species 0 Sporosarcina sp. P37 1930546 295 species 1 1476 476 0 Sporosarcina psychrophila 90964 31394 0 Staphylococcaceae 1 family 40 1460 2005363 303 0 genus 1 species 1 303 1849491 Auricoccus indicus 0 genus 33 535 1279 26406 0 Staphylococcus 1 1296 1059 0 Staphylococcus sciuri species 1 species 1 657 61015 Staphylococcus succinus 0 452 985762 Staphylococcus agnetis 0 species 1 1 no rank 0 502 91994 Staphylococcus sp. AntiMn-1 0 502 1715860 1 species 339 155085 Staphylococcus lutrae 0 species 1 species 1 708 643214 Staphylococcus stepanovicii 0 1294 542 0 Staphylococcus muscae species 1 species 1 679 985002 Staphylococcus argenteus 0 1 species Staphylococcus warneri 0 624 1292 773 246432 Staphylococcus equorum 0 species 1 361 170573 Staphylococcus pettenkoferi 0 species 1 species 1 799 70255 Staphylococcus condimenti 0 0 Staphylococcus felis 46127 427 1 species 498 29388 Staphylococcus capitis 0 species 1 species 1 1295 608 0 Staphylococcus schleiferi 683 1283 Staphylococcus haemolyticus 0 species 1 0 Staphylococcus pasteuri 45972 1485 1 species 1286 922 0 Staphylococcus simulans species 1 species 1 29384 765 0 Staphylococcus kloosii Staphylococcus piscifermentans 0 510 70258 1 species 0 Staphylococcus nepalensis 214473 581 1 species 1 species Staphylococcus lugdunensis 0 520 28035 1 species Staphylococcus simiae 0 846 308354 Staphylococcus carnosus 0 792 1281 1 species species 1 283734 710 0 Staphylococcus pseudintermedius 1284 592 0 Staphylococcus hyicus species 1 species 1 1015 1288 Staphylococcus xylosus 0 0 Staphylococcus hominis 1290 772 1 species Staphylococcus cohnii 0 746 29382 1 species species 1 819 29385 Staphylococcus saprophyticus 0 1 species Staphylococcus aureus 0 3627 1280 1282 1458 0 Staphylococcus epidermidis species 1 1 genus 0 536 45669 1 species Salinicoccus halodurans 0 536 407035 6 genus 4 1 2689 69965 Macrococcus 0 740 2619255 0 no rank 1 1 species Macrococcus sp. IME1552 0 740 1898474 Macrococcus caseolyticus 0 1293 69966 1 species species 1 650 1855823 Macrococcus canis 0 1 186820 6492 0 Listeriaceae 15 family 9 genus 6 57 6001 1637 Listeria 0 1 1643 707 0 Listeria welshimeri species 1 520 1640 Listeria seeligeri 0 species 1 1638 959 0 Listeria ivanovii species 1 0 Listeria innocua 1642 998 1 species 0 Listeria monocytogenes 1639 2760 1 species 4 2 genus 1 Brochothrix 0 476 2755 species 1 2756 472 0 Brochothrix thermosphacta Bacillaceae 0 93412 186817 1 115 family 281 genus 2 2675230 1784 0 Bacillus oceanisediminis 0 1117 665099 1 species 859143 667 0 Bacillus kochii species 1 5 genus 0 4063 2675234 species 1 1004 79885 Bacillus pseudofirmus 0 species 1 199441 952 0 Bacillus krulwichiae 300825 850 0 Bacillus lehensis species 1 species 1 79880 830 0 Bacillus clausii 1 species 0 Bacillus halodurans 86665 427 1 2 genus 1 0 Parageobacillus 1906945 752 1 species Parageobacillus thermoglucosidasius 0 751 1426 1478 2675229 0 genus 2 species 1 264697 526 0 Bacillus muralis 0 Bacillus simplex 1478 952 1 species genus 3 1 1593 1329200 Fictibacillus 0 1 1 species 0 Fictibacillus phosphorivorans 1221500 803 1 species 0 Fictibacillus arsenicus 255247 789 738 29331 Amphibacillus 0 1 genus 2 1 1449 737 0 Amphibacillus xylanus species 1 2721 genus 58 1 60010 1386 Bacillus 0 species 1 997 1547283 Bacillus weihaiensis 0 0 20334 86661 10 species group species 1 580165 834 0 Bacillus cytotoxicus 2337 2750818 0 no rank 3 981 1839798 Bacillus sp. FDAARGOS_235 0 species 1 1 species 0 Bacillus sp. ABP14 1892404 609 1 species Bacillus sp. HBCD-sjtu 0 747 2053832 1 species 0 Bacillus cereus 1396 6331 species 1 2988 1405 Bacillus mycoides 0 Bacillus bombysepticus 0 842 658666 1 species 1 species Bacillus thuringiensis 0 5638 1428 Bacillus toyonensis 0 919 155322 1 species species 1 1392 445 0 Bacillus anthracis Bacillus safensis 0 1508 561879 1 species 810 1471 Bacillus methanolicus 0 species 1 0 Bacillus flexus 86664 1034 1 species 0 Bacillus beveridgei 632773 409 1 species 1401 135735 Bacillus endophyticus 0 species 1 Bacillus gibsonii 0 56 79881 1 species 9593 653685 0 species group 9 0 Bacillus atrophaeus 1452 1006 1 species 72361 78 0 Bacillus vallismortis species 1 species 1 559 1648923 Bacillus paralicheniformis 0 119858 621 0 Bacillus sonorensis species 1 1 species Bacillus licheniformis 0 779 1402 0 1938374 2924 3 species subgroup Bacillus siamensis 0 347 659243 1 species 1275 1390 Bacillus amyloliquefaciens 0 species 1 492670 1302 0 Bacillus velezensis species 1 1 species Bacillus subtilis 0 3626 1423 0 Bacillus megaterium 1404 2439 1 species 637 1792192 0 species group 1 637 293387 Bacillus altitudinis 0 species 1 7547 185979 0 no rank 19 1 species Bacillus sp. 275 0 171 1941347 1 species Bacillus sp. LM 4-2 0 73 1628753 756828 1197 0 Bacillus sp. WP8 species 1 1127744 151 0 Bacillus sp. JS species 1 1 species Bacillus sp. H15-1 0 416 1856406 138 2009331 Bacillus sp. MD-5 0 species 1 1 species 0 Bacillus sp. SJ-10 563169 178 species 1 845 1827146 Bacillus sp. IHB B 7164 0 1 species 0 Bacillus sp. Lzh-5 2049935 100 390 98228 Bacillus sp. OxB-1 0 species 1 species 1 1565991 1189 0 Bacillus sp. X1(2014) species 1 158 1446792 Bacillus sp. Pc3 0 1574141 145 0 Bacillus sp. YP1 species 1 1 species 0 Bacillus sp. FJAT-14266 1837130 671 1 species Bacillus sp. (in: Bacteria) 0 83 1409 1 species Bacillus sp. SDLI1 0 350 1774743 1 species 0 Bacillus sp. BH072 1570330 159 species 1 717 666686 Bacillus sp. 1NLA3E 0 1 species 0 Bacillus sp. 1s-1 2026248 416 0 Bacillus horikoshii 79883 712 1 species 1408 2963 0 Bacillus pumilus species 1 Bacillus coagulans 0 1317 1398 1 species Bacillus cohnii 0 883 33932 1 species 731 412384 Bacillus aryabhattai 0 species 1 1 species 0 Bacillus cellulosilyticus 1413 963 1 species Bacillus infantis 0 863 324767 1479 674 0 Bacillus smithii species 1 species 1 721 1664069 Bacillus glycinifermentans 0 1 species Bacillus xiamenensis 0 697 1178537 571 175304 0 genus 1 species 1 1472767 571 0 Lentibacillus amyloliquefaciens 1 genus 0 182709 1615 1615 182710 Oceanobacillus iheyensis 0 species 1 2 6 genus 1 0 Anoxybacillus 150247 2770 198467 378 0 Anoxybacillus gonensis species 1 0 783 2639704 2 no rank 1 species Anoxybacillus sp. B7M1 0 367 1490057 species 1 416 1490052 Anoxybacillus sp. B2M1 0 0 Anoxybacillus flavithermus 33934 1084 1 species 523 294699 Anoxybacillus amylolyticus 0 species 1 genus 1 511 459532 0 0 Terribacillus aidingensis 586416 511 1 species 180 15 genus 1 0 Geobacillus 129337 4327 Geobacillus subterraneus 0 212 129338 1 species 6 no rank 0 2642459 1616 581103 706 0 Geobacillus sp. Y4.1MC1 species 1 1 species 0 Geobacillus sp. WCH70 471223 310 691437 158 0 Geobacillus sp. C56-T3 species 1 190 1233873 Geobacillus sp. GHH01 0 species 1 0 Geobacillus sp. Y412MC52 550542 126 1 species Geobacillus sp. Y412MC61 0 126 544556 1 species 344 1422 Geobacillus stearothermophilus 0 species 1 species group 4 1505648 1282 0 0 Geobacillus thermoleovorans 33941 569 1 species 148 1462 Geobacillus kaustophilus 0 species 1 1 species 0 Geobacillus thermocatenulatus 33938 275 0 Geobacillus lituanicus 169283 290 1 species Geobacillus genomosp. 3 0 190 1921421 1 species Geobacillus thermodenitrificans 0 503 33940 1 species 0 351195 344 1 genus 1230341 344 0 Salimicrobium jeotgali species 1 1 Lysinibacillus 0 5090 400634 16 5 genus 1 no rank 0 952 2636778 species 1 2072025 952 0 Lysinibacillus sp. YS11 1 species Lysinibacillus varians 0 1208 1145276 2333 1421 Lysinibacillus sphaericus 0 species 1 28031 581 0 Lysinibacillus fusiformis species 1 816 1055323 0 genus 1 Aeribacillus pallidus 0 816 33936 1 species 0 45667 1197 2 genus 1 species Halobacillus mangrovi 0 691 402384 species 1 1570 506 0 Halobacillus halophilus 84406 5472 0 Virgibacillus 1 genus 7 56 1 species 0 Virgibacillus necropolis 163877 979 Virgibacillus phasianinus 0 908 2017483 1 species 1482 741 0 Virgibacillus halodenitrificans species 1 2 no rank 0 1725 2620237 1059 1911587 Virgibacillus sp. 6R 0 species 1 species 1 403957 666 0 Virgibacillus sp. SK37 species 1 1473 1063 0 Virgibacillus pantothenticus 9 family 9 Alicyclobacillaceae 0 2223 186823 1 genus 2 25 29330 624 0 Alicyclobacillus 1 Alicyclobacillus acidocaldarius 0 599 405212 1 species 2 genus 3 1 526 1129704 Kyrpidia 0 2055160 288 0 Kyrpidia sp. EA-1 species 1 236 33943 Kyrpidia tusciae 0 species 1 7 genus 3 1 432330 1064 0 Tumebacillus Tumebacillus algifaecis 0 470 1214604 1 species 587 1903704 Tumebacillus avium 0 species 1 1 42223 186822 Paenibacillaceae 0 67 family 46 0 1447 85151 3 no rank 3 3 genus 1 0 Aneurinibacillus 55079 1447 1 species 0 Aneurinibacillus soli 1500254 702 2642329 742 0 no rank 1 1 species 0 Aneurinibacillus sp. XH2 1450761 742 1 genus 2 1 76632 759 0 Thermobacillus Thermobacillus composti 0 758 377615 1 species 0 Brevibacillus 55080 3533 1 4 genus 67 1 species 0 Brevibacillus laterosporus 1465 1830 species 1 1393 979 0 Brevibacillus brevis 657 54913 Brevibacillus formosus 0 species 1 genus 36 329 36417 44249 Paenibacillus 0 1 1096 414771 Paenibacillus donghaensis 0 species 1 species group 1 2044880 993 0 993 483937 Paenibacillus riograndensis 0 species 1 1 species 0 Paenibacillus terrae 159743 1319 0 Paenibacillus larvae 1464 781 1 species 494 162209 Paenibacillus naphthalenovorans 0 species 1 species 1 1126833 740 0 Paenibacillus beijingensis 1 species 0 Paenibacillus odorifer 189426 974 species 1 895 528191 Paenibacillus xylanexedens 0 species 1 615 365617 Paenibacillus sabinae 0 species 1 1060 189425 Paenibacillus graminis 0 1406 2833 0 Paenibacillus polymyxa species 1 0 Paenibacillus borealis 160799 1504 1 species species 1 927 1462996 Paenibacillus yonginensis 0 0 Paenibacillus durus 44251 1178 1 species 1 species Paenibacillus bovis 0 1262 1616788 species 1 1189 61624 Paenibacillus mucilaginosus 0 Paenibacillus peoriae 0 799 59893 1 species 0 13244 185978 13 no rank 1 species 0 Paenibacillus sp. BIHB4019 1870819 782 0 Paenibacillus sp. lzh-N1 2069255 1054 1 species 1536770 1032 0 Paenibacillus sp. FSL R5-0345 species 1 0 Paenibacillus sp. JDR-2 324057 806 1 species 0 Paenibacillus sp. FSL R7-0273 1536772 1447 1 species 481743 822 0 Paenibacillus sp. Y412MC10 species 1 1 species 0 Paenibacillus sp. FSL H7-0357 1536774 1115 1110 1536771 Paenibacillus sp. FSL R5-0912 0 species 1 species 1 588 1695218 Paenibacillus sp. 32O-W 0 species 1 1207 1536775 Paenibacillus sp. FSL H7-0737 0 0 Paenibacillus sp. IHBB 10380 1566358 764 1 species 0 Paenibacillus sp. FSL P4-0081 1536769 1440 1 species 1536773 1077 0 Paenibacillus sp. FSL R7-0331 species 1 0 Paenibacillus crassostreae 1763538 885 1 species 1178515 566 0 Paenibacillus swuensis species 1 species 1 769 172713 Paenibacillus kribbensis 0 Paenibacillus stellifer 0 1040 169760 1 species 925 1870820 Paenibacillus ihbetae 0 species 1 no rank 9 2993 539002 0 1101 539738 0 no rank 2 5 genus 2 1 1378 1101 0 Gemella 1096 2624949 0 no rank 1 0 Gemella sp. oral taxon 928 1785995 1096 1 species 1892 539742 0 no rank 7 16 genus 7 1 1892 33986 Exiguobacterium 0 1143 2644629 0 no rank 4 0 Exiguobacterium sp. U13-1 1849031 326 1 species species 1 280 1399115 Exiguobacterium sp. MH3 0 1 species 0 Exiguobacterium sp. AT1b 360911 234 species 1 1224749 303 0 Exiguobacterium sp. ZWU0009 1 species 0 Exiguobacterium antarcticum 132920 383 1 species Exiguobacterium sibiricum 0 350 332410 family 1 667 186821 0 0 663587 667 1 no rank [Bacillus] selenitireducens 0 667 85683 1 species 1508 order 162 1 186826 146053 0 Lactobacillales 74513 1300 Streptococcaceae 0 1 family 49 1280 genus 5 5 4123 1357 Lactococcus 0 1 species 1 1363 855 0 Lactococcus garvieae species 1 1364 395 0 Lactococcus piscium species 1 481 1366 Lactococcus raffinolactis 0 1358 2387 0 Lactococcus lactis species 1 3696 43 genus 1 Streptococcus 0 69110 1301 0 Streptococcus pyogenes 1314 1513 1 species 2536 102684 Streptococcus infantarius 0 species 1 2282 28037 Streptococcus mitis 0 species 1 1 species 0 Streptococcus merionis 400065 618 1 species 0 Streptococcus agalactiae 1311 3772 species 1 1307 8641 0 Streptococcus suis 1 species 0 Streptococcus cristatus 45634 667 1349 822 0 Streptococcus uberis species 1 Streptococcus sanguinis 0 940 1305 1 species 0 Streptococcus salivarius 1304 3804 1 species species 1 656 1348 Streptococcus parauberis 0 1 species 0 Streptococcus mutans 1309 863 406 1811193 Streptococcus pantholopis 0 species 1 729 1326 Streptococcus acidominimus 0 species 1 315405 1452 0 Streptococcus gallolyticus species 1 species 1 1544 197614 Streptococcus pasteurianus 0 1983 1302 Streptococcus gordonii 0 species 1 0 Streptococcus parasanguinis 1318 1921 1 species 431 1814128 Streptococcus halotolerans 0 species 1 0 Streptococcus macedonicus 59310 590 1 species 260 1888195 Streptococcus himalayensis 0 species 1 0 4888 2608887 7 no rank 546 1902136 Streptococcus sp. NPS 308 0 species 1 species 1 1156433 947 0 Streptococcus sp. I-P16 species 1 1156431 741 0 Streptococcus sp. I-G2 species 1 906 712633 Streptococcus sp. oral taxon 431 0 1 species 0 Streptococcus sp. FDAARGOS_192 1839799 1015 1 species Streptococcus sp. A12 0 404 1759399 1 species Streptococcus sp. 'group B' 0 329 1319 1 species Streptococcus oralis 0 2645 1303 species 1 2075 150055 Streptococcus lutetiensis 0 species group 2 1932 119603 0 1336 1206 0 Streptococcus equi species 1 1334 726 0 Streptococcus dysgalactiae species 1 0 Streptococcus thermophilus 1308 3351 1 species 0 Streptococcus marmotae 1825069 313 1 species species 1 1313 1773 0 Streptococcus pneumoniae 1 species 0 Streptococcus pseudopneumoniae 257758 641 3 species group 0 9301 671232 Streptococcus constellatus 0 1627 76860 1 species species 1 1338 1069 0 Streptococcus intermedius 0 Streptococcus anginosus 1328 6605 1 species 0 Streptococcus equinus 1335 791 1 species 1 species Streptococcus iniae 0 912 1346 1 species 0 Streptococcus pluranimalium 82348 362 658 263855 0 no rank 1 0 Lactobacillales bacterium 1993866 658 1 species 22 18 family 1 Enterococcaceae 0 22917 81852 1350 19788 0 Enterococcus 1 genus 12 2002 417368 631 0 Enterococcus thailandicus species 1 species 1 1352 6586 0 Enterococcus faecium 3 no rank 0 2608891 1620 1 species 0 Enterococcus sp. FDAARGOS_163 2060306 542 578 2060307 Enterococcus sp. FDAARGOS_375 0 species 1 species 1 500 2057791 Enterococcus sp. CR-Ec1 0 species 1 53345 1262 0 Enterococcus durans 0 Enterococcus wangshanyuanii 2005703 849 1 species 1096 53346 Enterococcus mundtii 0 species 1 1 species 0 Enterococcus hirae 1354 857 species 1 493 37734 Enterococcus casseliflavus 0 1 species Enterococcus faecalis 0 4392 1351 1 3 genus 1 Vagococcus 0 1381 2737 Vagococcus penaei 0 796 633807 1 species 519472 584 0 Vagococcus teuberi species 1 genus 1 33969 536 0 0 Melissococcus plutonius 33970 536 1 species 0 1190 51668 1 genus 1 species Tetragenococcus halophilus 0 1190 51669 family 58 61 33958 33812 0 Lactobacillaceae 1 0 1256 2767842 3 genus 223 60520 Lactobacillus paraplantarum 0 species 1 1 species Lactobacillus pentosus 0 203 1589 species 1 830 1590 Lactobacillus plantarum 0 1448 16 genus 1 0 Lactobacillus 1578 10739 species 1 452 1579 Lactobacillus acidophilus 0 Lactobacillus johnsonii 0 1601 33959 1 species species 1 1584 1329 0 Lactobacillus delbrueckii species 1 1616 1596 Lactobacillus gasseri 0 Lactobacillus kefiranofaciens 0 276 267818 1 species 1 species Lactobacillus acetotolerans 0 209 1600 83683 311 0 Lactobacillus amylolyticus species 1 species 1 495 52242 Lactobacillus gallinarum 0 no rank 4 1043 2620435 0 2108362 128 0 Lactobacillus sp. D1501 species 1 0 Lactobacillus sp. CBA3605 2099788 448 1 species 1 species 0 Lactobacillus sp. CBA3606 2099789 172 species 1 1545702 295 0 Lactobacillus sp. wkB8 Lactobacillus helveticus 0 930 1587 1 species species 1 1604 613 0 Lactobacillus amylovorus 109790 416 0 Lactobacillus jensenii species 1 0 2767879 3552 6 genus Lactobacillus farciminis 0 566 1612 1 species species 1 647 392416 Lactobacillus crustorum 0 1 species Lactobacillus allii 0 591 1847728 1 species Lactobacillus heilongjiangensis 0 521 1074467 Lactobacillus alimentarius 0 793 1602 1 species 1007676 434 0 Lactobacillus ginsenosidimutans species 1 1253 2847 0 Pediococcus 1 genus 6 6 842 1255 Pediococcus pentosaceus 0 species 1 1 species 0 Pediococcus claussenii 187452 311 0 Pediococcus inopinatus 114090 246 1 species species group 1 875 1670797 0 Pediococcus acidilactici 0 875 1254 1 species Pediococcus damnosus 0 567 51663 1 species 0 184 2767877 1 genus 184 148814 Lactobacillus kunkeei 0 species 1 1 genus 0 2767876 859 1 species Lactobacillus amylophilus 0 859 1603 genus 3 1347 2767893 0 species 1 314 152331 Lactobacillus parabuchneri 0 species 1 409 1138822 Lactobacillus curieae 0 0 Lactobacillus buchneri 1581 624 1 species 1 genus 0 2767892 591 1 species Lactobacillus paracollinoides 0 591 240427 4 genus 0 2767887 5159 1601 379 0 Lactobacillus agilis species 1 species 1 89059 515 0 Lactobacillus acidipiscis Lactobacillus salivarius 0 2512 1624 1 species 1623 1753 0 Lactobacillus ruminis species 1 1 genus 0 442 2767890 species 1 442 1193095 Lactobacillus hokkaidonensis 0 3 genus 0 2759736 1766 47715 696 0 Lactobacillus rhamnosus species 1 665 1582 Lactobacillus casei 0 species 1 1 species 0 Lactobacillus paracasei 1597 405 0 2767881 599 2 genus species 1 301 1625 Lactobacillus sanfranciscensis 0 0 Lactobacillus lindneri 53444 298 1 species genus 3 722 2767886 0 Lactobacillus brevis 0 369 1580 1 species 1 species 0 Lactobacillus zymae 267363 92 0 Lactobacillus koreensis 637971 261 1 species 2 genus 0 917 2767885 0 Lactobacillus sakei 1599 600 1 species 28038 317 0 Lactobacillus curvatus species 1 2742598 2171 0 genus 3 Lactobacillus fermentum 0 583 1613 1 species 1 species Lactobacillus mucosae 0 758 97478 1598 830 0 Lactobacillus reuteri species 1 2 genus 0 2767889 600 species 1 375175 273 0 Lactobacillus backii 1 species 0 Lactobacillus coryniformis 1610 327 6 17 family 1 0 Leuconostocaceae 81850 5073 8 genus 9 1 1243 3060 0 Leuconostoc 588 1245 Leuconostoc mesenteroides 0 species 1 1252 584 0 Leuconostoc carnosum species 1 383 33964 Leuconostoc citreum 0 species 1 0 231 2685106 1 no rank 979982 231 0 Leuconostoc sp. C2 species 1 136609 285 0 Leuconostoc kimchii species 1 1 species Leuconostoc lactis 0 267 1246 Leuconostoc garlicum 0 94 255248 1 species species 1 620 1244 Leuconostoc gelidum 0 389 46254 0 genus 1 1 species Oenococcus oeni 0 389 1247 6 genus 1 Weissella 0 1618 46255 1 1 species Weissella ceti 0 210 759620 0 Weissella jogaejeotgali 1631871 225 1 species 1 species 0 Weissella paramesenteroides 1249 360 species 1 137591 475 0 Weissella cibaria 347 165096 Weissella koreensis 0 species 1 family 8 2 2848 186827 Aerococcaceae 0 1 genus 7 28 2846 1375 Aerococcus 0 1 0 Aerococcus christensenii 87541 507 1 species 0 Aerococcus viridans 1377 386 1 species species 1 1376 685 0 Aerococcus urinae species 1 128944 399 0 Aerococcus urinaehominis species 1 323 119206 Aerococcus sanguinicola 0 1 species Aerococcus urinaeequi 0 518 51665 1 0 Carnobacteriaceae 186828 4724 3 10 family 1 2980 2747 Carnobacterium 0 6 genus 5 no rank 2 1484 257487 0 Carnobacterium sp. 17-4 0 1181 208596 1 species Carnobacterium sp. CP1 0 303 1564681 1 species 682 147709 Carnobacterium inhibens 0 species 1 1 species 0 Carnobacterium maltaromaticum 2751 808 1470540 973 0 genus 2 no rank 1 2621505 483 0 483 1903686 Jeotgalibaca sp. PTS2502 0 species 1 1 species 0 Jeotgalibaca dankookensis 708126 490 genus 2 1 191769 768 0 Marinilactibacillus 1 no rank 1 767 2632303 0 0 Marinilactibacillus sp. 15R 1911586 767 1 species 1 1676648 301 0 Limnochordia 3 class 5 1 1676649 298 0 Limnochordales 3 order 4 family 3 3 1676650 295 0 Limnochordaceae 1 0 Limnochorda 1676651 292 1 2 genus 2 1 species Limnochorda pilosa 0 290 1555112 Negativicutes 0 364759 909932 1 31 class 39 53 order 14 1 909929 276202 0 Selenomonadales Sporomusaceae 0 5265 1843490 1 4 family 5 Pelosinus 0 5260 365348 1 3 genus 9 species 1 2514 365349 Pelosinus fermentans 0 0 2737 2629460 1 no rank 1 species 0 Pelosinus sp. UFO1 484770 2737 9 family 147 0 Selenomonadaceae 1843491 270884 1 10 2 genus 1 0 Megamonas 158846 264044 158847 264034 0 Megamonas hypermegale species 1 1 6693 970 Selenomonas 0 42 genus 6 1 species 0 Selenomonas ruminantium 971 2496 69823 1202 0 Selenomonas sputigena species 1 no rank 3 2637378 2953 0 species 1 713030 1139 0 Selenomonas sp. oral taxon 136 1 species 0 Selenomonas sp. oral taxon 478 712538 1094 1 species Selenomonas sp. oral taxon 920 0 720 1884263 206 order 11 1 83738 1843489 Veillonellales 0 Veillonellaceae 0 83532 31977 1 10 family 1001 1 0 Dialister 39948 1282 8 2 genus 39950 1274 0 Dialister pneumosintes species 1 3 genus 8 0 Veillonella 29465 75731 1 species 1 29466 72422 0 Veillonella parvula Veillonella rodentium 0 3301 248315 1 species 1 5104 906 Megasphaera 0 422 genus 2 907 4682 0 Megasphaera elsdenii species 1 0 Negativicoccus 909928 414 1 2 genus 1 Negativicoccus massiliensis 0 413 1702287 1 species 5 order 2 Acidaminococcales 0 4780 1843488 1 1 909930 4778 0 Acidaminococcaceae 5 family 4 1 4773 904 Acidaminococcus 0 18 genus 3 species 1 2189 905 Acidaminococcus fermentans 0 species 1 187327 2566 0 Acidaminococcus intestini 10 class 0 526524 11071 order 10 5 11071 526525 Erysipelotrichales 0 1 0 Erysipelotrichaceae 128827 11066 1 9 family 24 544447 5606 0 no rank 1 1 species Erysipelotrichaceae bacterium I46 0 5606 1834207 4 genus 2 1 2584 191303 Turicibacter 0 2580 2638206 0 no rank 1 2580 1712675 Turicibacter sp. H121 0 species 1 3 2 genus 1 Faecalibaculum 0 1608 1729679 Faecalibaculum rodentium 0 1605 1702221 1 species Erysipelothrix 0 1244 1647 1 3 genus 22 505 1514105 Erysipelothrix larvae 0 species 1 1 species Erysipelothrix rhusiopathiae 0 717 1648 no rank 1 84086 734 0 species 1 734 243899 endosymbiont 'TC1' of Trimyema compressum 0 623 phylum 22 Actinobacteria 0 332176 201174 1 717 84995 Rubrobacteria 0 1 class 6 2 1 715 84996 Rubrobacterales 0 8 order 5 1 84997 707 0 Rubrobacteraceae 3 family 4 1 Rubrobacter 0 704 42255 10 3 genus 49319 434 0 Rubrobacter xylanophilus species 1 42256 260 0 Rubrobacter radiotolerans species 1 1211 575 class 1 0 Actinobacteria 1760 308730 1 85012 3352 0 Streptosporangiales 13 order 14 Nocardiopsaceae 0 1500 83676 1 6 family 42 301 83677 0 genus 1 species 1 301 2021 Thermobifida fusca 0 genus 4 6 1157 2013 Nocardiopsis 0 1 0 Nocardiopsis alba 53437 327 1 species 2014 400 0 Nocardiopsis dassonvillei species 1 0 Nocardiopsis gilva 280236 424 1 species 3 4 family 1 Streptosporangiaceae 0 1307 2004 1 genus 0 2000 607 1 species 0 Streptosporangium roseum 2001 607 6 genus 2 1 697 83681 Nonomuraea 0 1 no rank 0 2593643 691 1909395 691 0 Nonomuraea sp. ATCC 55076 species 1 Thermomonosporaceae 0 532 2012 1 3 family 2 0 Thermomonospora 2019 530 1 2 genus 102 Thermomonospora curvata 0 428 2020 1 species 1 Pseudonocardiales 0 10491 85010 14 40 order 1 2070 10477 0 Pseudonocardiaceae 128 family 39 1 genus 0 1851 155 1852 155 0 Saccharomonospora viridis species 1 1 2 genus 1 Alloactinosynnema 0 282 674734 0 281 2636053 1 no rank 1 species Alloactinosynnema sp. L-07 0 281 1653480 1 472 1835 Saccharopolyspora 0 4 genus 2 1 species 0 Saccharopolyspora erythraea 1836 468 2535 1813 Amycolatopsis 0 1 genus 7 34 no rank 2 679 2618356 0 1911175 288 0 Amycolatopsis sp. BJA-103 species 1 1896961 391 0 Amycolatopsis sp. AA4 species 1 0 Amycolatopsis mediterranei 33910 437 1 species 486 1814 Amycolatopsis methanolica 0 species 1 0 Amycolatopsis japonica 208439 318 1 species 1 species Amycolatopsis orientalis 0 581 31958 1 genus 2 1 43356 819 0 Kutzneria species 1 818 43357 Kutzneria albida 0 genus 1 2071 481 0 species 1 103731 481 0 Saccharothrix espanaensis 1 1847 1928 0 Pseudonocardia 26 genus 8 270 240495 Pseudonocardia dioxanivorans 0 species 1 6 no rank 0 2619320 1632 250 1096868 Pseudonocardia sp. EC080625-04 0 species 1 1 species Pseudonocardia sp. EC080619-01 0 342 1096856 344 1688404 Pseudonocardia sp. EC080610-09 0 species 1 223 1690815 Pseudonocardia sp. HH130630-07 0 species 1 0 Pseudonocardia sp. AL041005-10 445576 234 1 species 0 Pseudonocardia sp. HH130629-09 1641402 239 1 species 6 genus 104 Actinoalloteichus 0 1618 65496 1 1 species 0 Actinoalloteichus hymeniacidonis 340345 267 324 1612552 Actinoalloteichus sp. ADI127-7 0 species 1 2644606 590 0 no rank 2 1 species Actinoalloteichus sp. GBA129-24 0 356 1612551 species 1 234 2072503 Actinoalloteichus sp. AHMU CJ021 0 333 1470176 Actinoalloteichus hoggarensis 0 species 1 2 2 genus 1 0 Lentzea 165301 477 1586287 475 0 Lentzea guizhouensis species 1 2 genus 1 0 Prauserella 142577 157 1 0 Prauserella marina 530584 156 1 species 1 2 genus 1 0 Kibdelosporangium 2029 316 0 Kibdelosporangium phytohabitans 860235 315 1 species 3 genus 15 Actinosynnema 0 1109 40566 1 1 species 0 Actinosynnema pretiosum 42197 563 species 1 531 40567 Actinosynnema mirum 0 0 196 52018 1 no rank species 1 196 1650658 Actinobacteria bacterium IMCC26256 0 1 Nakamurellales 0 335 1643684 2 4 order 1 85031 333 0 Nakamurellaceae 17 family 3 1 2 genus 1 0 Nakamurella 53460 316 Nakamurella multipartita 0 315 53461 1 species 0 1643683 69 2 order 2 family 0 69 85032 0 Acidothermus 28048 69 1 2 genus 1 1 species Acidothermus cellulolyticus 0 68 28049 0 431 622452 3 order 1 431 83778 Kineosporiaceae 0 3 family 3 2 genus 2 1 428 33981 Kineococcus 0 1 species 0 Kineococcus radiotolerans 131568 426 Streptomycetales 0 29612 85011 1 82 order 30 81 family 225 0 Streptomycetaceae 2062 29582 1 906 genus 75 1 1883 27502 0 Streptomyces Streptomyces pristinaespiralis 0 288 38300 1 species 1 species Streptomyces pluripotens 0 293 1355015 species 1 211 68202 Streptomyces fulvissimus 0 species 1 328 362257 Streptomyces vietnamensis 0 species 1 285473 291 0 Streptomyces rubrolavendulae Streptomyces pratensis 0 239 1169025 1 species 1 species 0 Streptomyces hygroscopicus 1912 1026 0 Streptomyces collinus 42684 246 1 species 1 species Streptomyces ambofaciens 0 297 1889 species 1 1930 330 0 Streptomyces scabiei species 1 379067 508 0 Streptomyces bingchenggensis 1 species Streptomyces venezuelae 0 627 54571 450 68280 Streptomyces violaceusniger 0 species 1 species 1 241 1616117 Streptomyces formicae 0 0 Streptomyces autolyticus 75293 408 1 species 1 species 0 Streptomyces clavuligerus 1901 407 1 species 0 Streptomyces peucetius 1950 224 species 1 342 68192 Streptomyces cyaneogriseus 0 species 1 288 1971 Streptomyces noursei 0 species 1 377 68214 Streptomyces griseochromogenes 0 371 68570 Streptomyces albulus 0 species 1 714 1888 Streptomyces albus 0 species 1 323 1935 Streptomyces violaceoruber 0 species 1 92644 381 0 Streptomyces malaysiensis species 1 species 1 349 164348 Streptomyces puniciscabiei 0 no rank 24 8232 2593676 0 1649184 288 0 Streptomyces sp. CFMR 7 species 1 1849967 362 0 Streptomyces sp. SAT1 species 1 species 1 2135430 378 0 Streptomyces sp. P3 1 species Streptomyces sp. S8 0 266 1837283 1 species 0 Streptomyces sp. CMB-StM0423 2059884 315 234612 381 0 Streptomyces sp. TN58 species 1 335 1561022 Streptomyces sp. CCM_MD2014 0 species 1 0 Streptomyces sp. 4F 1751294 278 1 species 0 Streptomyces sp. CNQ-509 444103 289 1 species species 1 1265601 307 0 Streptomyces sp. PAMC 26508 1 species 0 Streptomyces sp. fd1-xmd 1812480 454 Streptomyces sp. CdTB01 0 511 1725411 1 species species 1 1661694 311 0 Streptomyces sp. Tue 6075 species 1 312 862751 Streptomyces sp. SirexAA-E 0 species 1 1262452 415 0 Streptomyces sp. 769 species 1 465541 446 0 Streptomyces sp. Mg1 Streptomyces sp. RTd22 0 344 1841249 1 species species 1 1984801 220 0 Streptomyces sp. CLI2509 0 Streptomyces sp. M56 1495638 385 1 species 1 species 0 Streptomyces sp. FR-008 206662 341 Streptomyces sp. MOE7 0 312 1961713 1 species species 1 325 1964449 Streptomyces sp. 3211 0 1 species Streptomyces sp. Sge12 0 306 1972846 2094021 351 0 Streptomyces sp. WAC00288 species 1 271 33903 Streptomyces avermitilis 0 species 1 species 1 408015 389 0 Streptomyces xiamenensis 2 species group 0 599 1477431 1902 308 0 Streptomyces coelicolor species 1 1 species 0 Streptomyces sampsonii 42239 291 0 Streptomyces lavendulae 1914 393 1 species 1 species 0 Streptomyces parvulus 146923 330 0 Streptomyces glaucescens 1907 296 1 species 1 species Streptomyces niveus 0 245 193462 1 species Streptomyces lydicus 0 935 47763 species group 2 629295 580 0 319 1482596 0 species subgroup 1 1 species 0 Streptomyces griseus 1911 319 1482558 261 0 species subgroup 1 1 species Streptomyces globisporus 0 261 1908 species 1 1915 441 0 Streptomyces lincolnensis 0 Streptomyces gilvosporeus 553510 341 1 species 1 species 0 Streptomyces xinghaiensis 1038928 306 species 1 298 1916 Streptomyces lividans 0 1940 271 0 Streptomyces albireticuli species 1 species 1 243 1437453 Streptomyces leeuwenhoekii 0 0 Streptomyces cattleya 29303 366 1 species 0 Streptomyces alboflavus 67267 308 1 species 1 species Streptomyces pactum 0 618 68249 0 Streptomyces sp. S10(2016) 1783515 272 1 species 314 1926 Streptomyces reticuli 0 species 1 0 Streptomyces sp. XZHG99 2049881 211 1 species Streptomyces chartreusis 0 469 1969 1 species species 1 309 1642299 Streptomyces alfalfae 0 1 Kitasatospora 0 1855 2063 19 5 genus 467 2066 Kitasatospora setae 0 species 1 615 2633591 0 no rank 1 species 1 2018025 615 0 Kitasatospora sp. MMS16-BH015 398 1894 Kitasatospora aureofaciens 0 species 1 1 species Kitasatospora albolonga 0 356 68173 20 order 18 1 2037 6631 0 Actinomycetales Actinomycetaceae 0 6611 2049 1 17 family 1296 1 565 1069494 Trueperella 0 1 genus 2 Trueperella pyogenes 0 564 1661 1 species 30 9 genus 1 0 Actinomyces 1654 2471 1 species 0 Actinomyces gaoshouyii 1960083 168 species 1 283 111015 Actinomyces radicidentis 0 1912795 111 0 Actinomyces sp. VUL4_3 species 1 1 species 0 Actinomyces pacaensis 1852377 572 3 no rank 0 2609248 897 species 1 2081702 357 0 Actinomyces sp. oral taxon 897 1 species 0 Actinomyces sp. oral taxon 414 712122 275 species 1 265 1851395 Actinomyces sp. Chiba101 0 1 species 0 Actinomyces oris 544580 410 genus 1 1653174 200 0 1 species 0 Actinotignum schaalii 59505 200 0 Mobiluncus 2050 1348 1 2 genus 43 1 species 0 Mobiluncus curtisii 2051 1305 genus 1 152 28263 0 28264 152 0 Arcanobacterium haemolyticum species 1 genus 1 2529408 579 0 1 species Actinomyces meyeri 0 579 52773 order 4 1 622450 214 0 Actinopolysporales 1 1 Actinopolysporaceae 0 213 622451 1 3 family 1 Actinopolyspora 0 212 1849 1 2 genus 1 species Actinopolyspora erythraea 0 211 414996 504 85014 0 order 3 1 0 Glycomycetaceae 85034 504 13 3 family genus 2 2 283810 491 0 Stackebrandtia 1 1 species 0 Stackebrandtia nassauensis 283811 489 5 7 order 1 0 Frankiales 85013 932 1 Frankiaceae 0 927 74712 7 6 family genus 5 5 920 1854 Frankia 0 1 species 1 228 1859 Frankia alni 0 1 species Frankia inefficax 0 320 298654 221 2632575 0 no rank 1 Frankia sp. EAN1pec 0 221 298653 1 species Frankia casuarinae 0 146 106370 1 species 5167 85008 Micromonosporales 0 1 order 20 3 63 19 family 1 Micromonosporaceae 0 5164 28056 1 2406 1865 Actinoplanes 0 50 genus 6 403 196914 Actinoplanes friuliensis 0 species 1 0 1597 2626549 3 no rank 649831 463 0 Actinoplanes sp. N902-109 species 1 0 Actinoplanes sp. SE50/110 134676 567 1 species 0 Actinoplanes sp. SE50 2033844 567 1 species species 1 356 1866 Actinoplanes missouriensis 0 4 genus 14 Plantactinospora 0 1194 673534 1 0 1180 2631981 3 no rank 1 species 0 Plantactinospora sp. BC1 2108470 306 1 species 0 Plantactinospora sp. KBS50 2024580 491 2071627 383 0 Plantactinospora sp. BB1 species 1 genus 1 84593 1 0 Verrucosispora genus 3 2 477 168694 Salinispora 0 1 177 168695 Salinispora tropica 0 species 1 species 1 298 168697 Salinispora arenicola 0 4 genus 18 0 Micromonospora 1873 1023 1 318 47850 Micromonospora aurantiaca 0 species 1 0 2617518 415 1 no rank species 1 415 648999 Micromonospora sp. L5 0 1 species 0 Verrucosispora maris 1003110 272 33158 85007 Corynebacteriales 0 1 order 161 306 3 family 1 0 Segniliparaceae 316606 214 1 0 Segniliparus 286801 213 1 2 genus 1 Segniliparus rotundus 0 212 286802 1 species 52 family 78 0 Corynebacteriaceae 1653 10623 1 51 genus 196 0 Corynebacterium 1716 10545 1 92706 93 0 [Brevibacterium] flavum species 1 species 1 240 1705 Corynebacterium stationis 0 1 species Corynebacterium jeikeium 0 450 38289 1 species 0 Corynebacterium cystitidis 35757 67 1 species Corynebacterium mustelae 0 147 571915 species 1 110 187491 Corynebacterium glaucum 0 Corynebacterium pseudotuberculosis 0 269 1719 1 species Corynebacterium terpenotabidum 0 106 89154 1 species species 1 161 161896 Corynebacterium camporealensis 0 species 1 282 1727 Corynebacterium variabile 0 0 Corynebacterium uterequi 1072256 380 1 species 1 species 0 Corynebacterium urealyticum 43771 124 1 species Corynebacterium sphenisci 0 180 191493 1721 187 0 Corynebacterium callunae species 1 1 species Corynebacterium vitaeruminis 0 365 38305 species 1 160386 166 0 Corynebacterium casei 212 203263 Corynebacterium aquilae 0 species 1 species 1 131 1697 Corynebacterium ammoniagenes 0 species 1 249 146827 Corynebacterium simulans 0 0 Corynebacterium glyciniphilum 1404244 284 1 species Corynebacterium efficiens 0 276 152794 1 species no rank 2 2624378 337 0 species 1 153 1487956 Corynebacterium sp. ATCC 6931 0 species 1 702967 184 0 Corynebacterium sp. NML98-0116 250 28028 Corynebacterium flavescens 0 species 1 1 species 0 Corynebacterium crudilactis 1652495 131 0 Corynebacterium kutscheri 35755 291 1 species species 1 153 1231000 Corynebacterium lactis 0 1223514 181 0 Corynebacterium humireducens species 1 1 species Corynebacterium ulcerans 0 316 65058 191610 85 0 Corynebacterium atypicum species 1 species 1 258224 88 0 Corynebacterium resistens 1 species Corynebacterium kroppenstedtii 0 113 161879 Corynebacterium singulare 0 316 161899 1 species 1 species Corynebacterium maris 0 171 575200 1 species Corynebacterium aurimucosum 0 195 169292 363 1718 Corynebacterium glutamicum 0 species 1 188 1717 Corynebacterium diphtheriae 0 species 1 species 1 1230998 220 0 Corynebacterium frankenforstense 0 Corynebacterium epidermidicanis 1050174 78 1 species species 1 1408191 153 0 Corynebacterium deserti 204 108486 Corynebacterium falsenii 0 species 1 1 species Corynebacterium testudinoris 0 116 136857 Corynebacterium phocae 0 105 161895 1 species 1 species Corynebacterium marinum 0 224 349751 Corynebacterium imitans 0 311 156978 1 species 1 species 0 Corynebacterium striatum 43770 449 198 1121358 Corynebacterium doosanense 0 species 1 0 Corynebacterium halotolerans 225326 371 1 species 1 species Corynebacterium ureicelerivorans 0 108 401472 species 1 42817 155 0 Corynebacterium argentoratense 0 85029 354 3 family genus 3 56 37914 354 0 Dietzia 1 165 2617939 0 no rank 1 species 1 712270 165 0 Dietzia sp. oral taxon 368 species 1 133 499555 Dietzia timorensis 0 2 family 4 1 690 85028 Tsukamurellaceae 0 genus 3 77 688 2060 Tsukamurella 0 1 1 species Tsukamurella paurometabola 0 316 2061 0 Tsukamurella tyrosinosolvens 57704 295 1 species 200 697024 0 no rank 2 1 0 Lawsonella 1847725 200 2 2 genus 1 species 0 Lawsonella clevelandensis 1528099 198 1 7653 85025 Nocardiaceae 0 36 family 31 122 genus 23 1 4658 1827 Rhodococcus 0 1829 154 0 Rhodococcus rhodochrous species 1 1 species Rhodococcus opacus 0 749 37919 103816 168 0 Rhodococcus pyridinivorans species 1 0 Rhodococcus ruber 1830 198 1 species 247 1828 Rhodococcus fascians 0 species 1 1833 150 0 Rhodococcus erythropolis species 1 Rhodococcus aetherivorans 0 274 191292 1 species 1963 192944 0 no rank 12 species 1 1570939 153 0 Rhodococcus sp. 2G species 1 1045808 170 0 Rhodococcus sp. YL-1 0 Rhodococcus sp. WB1 1033922 298 1 species 130 935199 Rhodococcus sp. p52 0 species 1 0 Rhodococcus sp. 008 1723645 106 1 species species 1 1807790 110 0 Rhodococcus sp. BH4 1 species Rhodococcus sp. B7740 0 230 1564114 159 1653479 Rhodococcus sp. PBTS 2 0 species 1 0 Rhodococcus sp. WMMA185 679318 83 1 species 1 species 0 Rhodococcus sp. MTM3W5.2 1805827 214 154 1653478 Rhodococcus sp. PBTS 1 0 species 1 0 Rhodococcus sp. H-CA8f 1727214 156 1 species Rhodococcus hoagii 0 197 43767 1 species species 1 134 334542 Rhodococcus qingshengii 0 0 Rhodococcus jostii 132919 302 1 species 1 2959 1817 Nocardia 0 41 genus 7 species 1 135487 585 0 Nocardia cyriacigeorgica Nocardia seriolae 0 463 37332 1 species 1 species 0 Nocardia brasiliensis 37326 609 337 37329 Nocardia farcinica 0 species 1 0 Nocardia nova 37330 451 1 species 1 species 0 Nocardia terpenica 455432 473 1 85026 1823 0 Gordoniaceae 3 family 9 8 genus 20 0 Gordonia 2053 1820 1 0 Gordonia phthalatica 1136941 235 1 species 1 species Gordonia terrae 0 242 2055 species 1 84595 286 0 Gordonia polyisoprenivorans 0 2657482 528 2 no rank species 1 337191 351 0 Gordonia sp. KTR9 species 1 177 2059875 Gordonia sp. YC-JH1 0 0 Gordonia iterans 1004901 196 1 species species 1 313 2054 Gordonia bronchialis 0 89 family 56 1 11295 1762 Mycobacteriaceae 0 440 34 genus 1 Mycobacterium 0 5964 1763 0 Mycobacterium ulcerans 1809 179 1 species 1 species Mycobacterium leprae 0 89 1769 0 338 77643 4 species group 94 species 3 1 1773 257 0 Mycobacterium tuberculosis biotype 1 82 1765 Mycobacterium bovis 0 1 biotype Mycobacterium africanum 0 81 33894 0 Mycobacterium canettii 78331 81 1 species species group 8 1144 120793 0 Mycobacterium paraintracellulare 0 56 1138383 1 species 339268 221 0 Mycobacterium colombiense species 1 701042 149 0 Mycobacterium marseillense species 1 1 1767 284 0 Mycobacterium intracellulare 56 species 4 subspecies 1 1203599 59 0 Mycobacterium yongonense Mycobacterium chimaera 0 137 222805 1 subspecies 1 subspecies 0 Mycobacterium indicus pranii 35617 32 0 Mycobacterium avium 1764 434 1 species 1 species group 0 164 2249310 species 1 164 722731 Mycobacterium shigaense 0 species 1 29311 151 0 Mycobacterium haemophilum Mycobacterium liflandii 0 129 261524 1 species 0 Mycobacterium dioxanotrophicus 482462 283 1 species 0 2680 2642494 13 no rank species 1 1545728 243 0 Mycobacterium sp. EPa45 1 species Mycobacterium sp. QIA-37 0 169 1561223 0 Mycobacterium sp. JLS 164757 132 1 species 1 species Mycobacterium sp. JS623 0 215 212767 214 189918 Mycobacterium sp. KMS 0 species 1 0 Mycobacterium sp. NRRL B-3805 1570328 225 1 species species 1 2051552 276 0 Mycobacterium sp. PYR15 Mycobacterium sp. djl-10 0 255 1879023 1 species species 1 1920667 221 0 Mycobacterium sp. WY10 species 1 1273687 203 0 Mycobacterium sp. VKM Ac-1817D 164756 208 0 Mycobacterium sp. MCS species 1 1168287 59 0 Mycobacterium sp. MOTT36Y species 1 0 Mycobacterium sp. YC-RL4 1682113 260 1 species species 1 1781 149 0 Mycobacterium marinum Mycobacterium kansasii 0 218 1768 1 species 2 genus 0 1073531 349 1788 142 0 Mycobacterium terrae species 1 1 species 0 Mycobacterium sinense 875328 207 1866885 3901 0 genus 13 1 species 0 Mycobacterium phlei 1771 254 1 species 0 Mycobacterium chubuense 1800 222 1 species 0 Mycobacterium vanbaalenii 110539 178 species 1 460 1772 Mycobacterium smegmatis 0 36814 344 0 Mycobacterium rhodesiae species 1 1810 267 0 Mycobacterium vaccae species 1 species 1 1766 186 0 Mycobacterium fortuitum species 1 257 758802 Mycobacterium litorale 0 279 1797 Mycobacterium thermoresistibile 0 species 1 species 1 1804 259 0 Mycobacterium gilvum 561 134601 Mycobacterium goodii 0 species 1 Mycobacterium neoaurum 0 225 1795 1 species 0 Mycobacterium aurum 1791 409 1 species 0 871 670516 5 genus 0 Mycobacterium immunogenum 83262 162 1 species 0 Mycobacterium abscessus 36809 273 1 species 1 species Mycobacterium saopaulense 0 121 1578165 species 1 1520670 155 0 Mycobacterium stephanolepidis Mycobacterium chelonae 0 160 1774 1 species genus 1 121 697025 0 639313 121 0 Hoyosella subflava species 1 1 1643682 1232 0 Geodermatophilales 2 order 8 1 Geodermatophilaceae 0 1230 85030 200 7 family 2 genus 1 Blastococcus 0 228 38501 1 species 1 138336 227 0 Blastococcus saxobsidens 1 0 Geodermatophilus 1860 373 1 2 genus 1861 372 0 Geodermatophilus obscurus species 1 genus 2 7 429 88138 Modestobacter 0 1 species 1 422 477641 Modestobacter marinus 0 985 2039638 Candidatus Nanopelagicales 0 1 order 12 1 11 family 0 984 2162846 2 genus 4 1 2039639 222 0 Candidatus Nanopelagicus 0 Candidatus Nanopelagicus hibericus 1884915 96 1 species 0 Candidatus Nanopelagicus limnes 1884634 69 1 species 1884916 55 0 Candidatus Nanopelagicus abundans species 1 Candidatus Planktophila 0 762 622681 1 7 genus 2 0 Candidatus Planktophila dulcis 1884914 185 1 species 73 1884904 Candidatus Planktophila sulfonica 0 species 1 1884905 185 0 Candidatus Planktophila versatilis species 1 species 1 191 1884913 Candidatus Planktophila lacus 0 1 species Candidatus Planktophila vernalis 0 62 1884907 species 1 573600 64 0 Candidatus Planktophila limnetica 573 414714 Catenulisporales 0 1 order 4 1 3 3 family 1 0 Catenulisporaceae 414877 572 8 2 genus 1 Catenulispora 0 569 414878 1 species 0 Catenulispora acidiphila 304895 561 order 30 14 6126 85009 Propionibacteriales 0 1 85015 1797 0 Nocardioidaceae 1 family 11 31 20 2 genus 1 Kribbella 0 325 182639 305 182640 Kribbella flavida 0 species 1 116071 270 0 genus 1 species 1 75385 270 0 Micropruina glycogenica 2 genus 3 Pimelobacter 0 297 2044 1 species 1 294 2045 Pimelobacter simplex 0 genus 4 12 1839 685 0 Nocardioides 1 Nocardioides dokdonensis 0 186 450734 1 species species 1 264 2045452 Nocardioides sp. 78 0 0 2615069 223 1 no rank 1 species 0 Nocardioides sp. JS614 196162 223 genus 1 189 2040 0 species 1 2041 189 0 Aeromicrobium erythreum 18 family 39 Propionibacteriaceae 0 4315 31957 1 genus 5 6 72763 1033 0 Tessaracoccus 1 1 species 0 Tessaracoccus flavus 1610493 228 0 Tessaracoccus aquimaris 1332264 355 1 species 399497 198 0 Tessaracoccus flavescens species 1 no rank 1 246 2635419 0 0 Tessaracoccus sp. T2.5-30 1909732 246 1 species 29404 245 0 Microlunatus 1 genus 2 2 species 1 243 29405 Microlunatus phosphovorus 0 1 2 genus 1 Acidipropionibacterium 0 254 1912215 Acidipropionibacterium acidipropionici 0 253 1748 1 species genus 3 909 1912216 0 species 1 33011 136 0 Cutibacterium granulosum species 1 361 33010 Cutibacterium avidum 0 species 1 1747 412 0 Cutibacterium acnes 1 genus 0 947 203133 947 2633994 0 no rank 1 1 species 0 Propionimicrobium sp. Marseille-P3275 1871034 947 1 genus 0 2801844 145 1 species Pseudopropionibacterium propionicum 0 145 1750 7 genus 3 1 1743 743 0 Propionibacterium 0 2608905 185 1 no rank 0 Propionibacterium sp. oral taxon 193 671223 185 1 species 551 1744 Propionibacterium freudenreichii 0 species 1 order 25 56 185147 85004 Bifidobacteriales 0 1 0 Bifidobacteriaceae 31953 185091 1 24 family 1829 genus 19 1027 182381 1678 Bifidobacterium 0 1 676 158787 Bifidobacterium scardovii 0 species 1 1 species 0 Bifidobacterium dentium 1689 607 species 1 1683 2199 0 Bifidobacterium angulatum 1 species 0 Bifidobacterium indicum 1691 648 531 35760 Bifidobacterium choerinum 0 species 1 1 species 0 Bifidobacterium breve 1685 8652 637 33905 Bifidobacterium thermophilum 0 species 1 1 Bifidobacterium catenulatum 0 20184 1686 6405 2 species 1 subspecies 0 Bifidobacterium kashiwanohense 630129 13779 Bifidobacterium adolescentis 0 3017 1680 1 species 0 Bifidobacterium animalis 28025 440 1 species 1 species Bifidobacterium pseudocatenulatum 0 60102 28026 Bifidobacterium coryneforme 0 275 1687 1 species 1 species 0 Bifidobacterium asteroides 1684 411 Bifidobacterium actinocoloniiforme 0 301 638619 1 species 17074 1681 Bifidobacterium bifidum 0 species 1 species 1 216816 64891 0 Bifidobacterium longum species 1 709 1694 Bifidobacterium pseudolongum 0 196082 286 0 genus 1 species 1 286 78258 Parascardovia denticolens 0 508 2701 Gardnerella 0 1 genus 2 1 species 1 2702 507 0 Gardnerella vaginalis 1 genus 0 87 196081 species 1 78259 87 0 Scardovia inopinata 134 order 231 Micrococcales 0 22181 85006 1 0 Intrasporangiaceae 85021 1022 1 9 family 9 189 53457 Janibacter 0 1 genus 2 3 0 Janibacter indicus 857417 186 1 species 1 0 Intrasporangium 53357 138 2 2 genus species 1 136 53358 Intrasporangium calvum 0 1 0 Serinicoccus 265976 295 1 2 genus 1758689 294 0 Serinicoccus sp. JLT9 species 1 1 267408 391 0 Arsenicicoccus 6 genus 2 no rank 1 385 2663846 0 1 species Arsenicicoccus sp. oral taxon 190 0 385 1658671 family 9 9 85017 1064 0 Promicromonosporaceae 1 5 3 genus 1 Cellulosimicrobium 0 426 157920 1 species Cellulosimicrobium cellulans 0 226 1710 1 no rank 0 195 2624466 1980001 195 0 Cellulosimicrobium sp. TH-20 species 1 3 genus 4 0 Isoptericola 254250 374 1 species 1 169 139208 Isoptericola variabilis 0 Isoptericola dokdonensis 0 201 372663 1 species genus 2 3 186188 255 0 Xylanimonas 1 1 species 0 Xylanimonas cellulosilytica 186189 252 2 family 0 125316 190 2 genus 2 1 190 84756 Beutenbergia 0 0 Beutenbergia cavernae 84757 188 1 species family 6 8 85016 661 0 Cellulomonadaceae 1 genus 5 13 1707 653 0 Cellulomonas 1 no rank 1 2620175 101 0 species 1 2003551 101 0 Cellulomonas sp. PSBB021 1 species 0 Cellulomonas gilvus 11 108 1711 249 0 Cellulomonas flavigena species 1 species 1 1708 182 0 Cellulomonas fimi 577468 24 0 no rank 1 genus 1 24 2038 0 species 1 2039 24 0 Tropheryma whipplei 1 Dermatophilaceae 0 122 85018 1 2 family 0 1862 121 1 genus species 1 1863 121 0 Dermatophilus congolensis family 2 85019 353 0 2 genus 2 1 1696 353 0 Brevibacterium species 1 1703 351 0 Brevibacterium linens 145360 326 0 family 2 1 0 Sanguibacter 60919 326 3 2 genus species 1 323 60920 Sanguibacter keddieii 0 0 71 85022 1 family 43673 71 0 genus 1 71 43674 Jonesia denitrificans 0 species 1 62 45 family 1 Microbacteriaceae 0 6417 85023 genus 1 48 1705353 0 1 species Aurantimicrobium minutum 0 48 708131 33886 204 0 genus 2 species 1 72 145458 Rathayibacter toxicus 0 species 1 33888 132 0 Rathayibacter tritici genus 2 1 364 1759331 Cnuibacter 0 1 1619308 363 0 Cnuibacter physcomitrellae species 1 1 197 337004 Microcella 0 2 genus 2 Microcella alkaliphila 0 195 279828 1 species 0 33877 198 1 genus 453304 198 0 Agromyces aureus species 1 1 genus 0 247 447237 1 no rank 0 247 2626248 species 1 1795630 247 0 Frondihabitans sp. PAMC 28766 22 genus 4 1 541 2034 Curtobacterium 0 2 no rank 0 257496 326 172 1561023 Curtobacterium sp. MR_MD2014 0 species 1 0 Curtobacterium sp. BH-2-1-1 1905847 154 1 species 1 species Curtobacterium pusillum 0 193 69373 Microbacterium 0 2217 33882 1 14 genus 118 species 1 176 162426 Microbacterium hominis 0 0 Microbacterium chocolatum 84292 79 1 species Microbacterium paludicola 0 180 300019 1 species 36805 228 0 Microbacterium aurum species 1 146 2033 Microbacterium testaceum 0 species 1 8 no rank 0 1290 2609290 0 Microbacterium sp. TPU 3598 1938334 151 1 species Microbacterium sp. CGR1 0 98 1696072 1 species 367477 150 0 Microbacterium sp. XT11 species 1 species 1 1906742 136 0 Microbacterium sp. BH-3-3-3 1916917 97 0 Microbacterium sp. 1.5R species 1 1 species Microbacterium sp. str. 'China' 0 209 2103230 Microbacterium sp. PAMC 28756 0 285 1795053 1 species 164 1714373 Microbacterium sp. No. 7 0 species 1 6 genus 22 Clavibacter 0 959 1573 1 185 5 species 1 Clavibacter michiganensis 0 937 28447 subspecies 1 134 31964 Clavibacter sepedonicus 0 Clavibacter nebraskensis 0 162 31963 1 subspecies Clavibacter insidiosus 0 188 33014 1 subspecies subspecies 1 268 1874630 Clavibacter capsici 0 1 Cryobacterium 0 566 69578 5 3 genus species 1 670052 240 0 Cryobacterium arcticum no rank 1 321 2649013 0 0 Cryobacterium sp. LW097 1978566 321 1 species genus 2 2 110932 315 0 Leifsonia 1 species 1 313 1575 Leifsonia xyli 0 0 1434032 78 1 genus 1 species 0 Pontimonas salivibrio 1159327 78 1 2 genus 1 0 Microterricola 518733 263 Microterricola viridarii 0 262 412690 1 species no rank 3 158 1655488 0 3 clade 0 1655489 158 1 genus 3 1 158 529883 Rhodoluna 0 1 species Rhodoluna lacicola 0 67 529884 1 species 0 Candidatus Rhodoluna planktonica 535712 90 3 7 family 1 0 Dermacoccaceae 145357 794 427 57495 Dermacoccus 0 1 genus 2 3 424 1274 Dermacoccus nishinomiyaensis 0 species 1 1 2 genus 1 Kytococcus 0 196 57499 Kytococcus sedentarius 0 195 1276 1 species 168 745364 Luteipulveratus 0 1 genus 2 1 species 1 167 571913 Luteipulveratus mongoliensis 0 11 family 7 0 Dermabacteraceae 85020 1772 1 2 2 genus 1 0 Dermabacter 36739 265 263 1630135 Dermabacter vaginalis 0 species 1 1 43668 1417 0 Brachybacterium 11 genus 6 species 1 2017485 316 0 Brachybacterium sp. VR2415 species 1 171 43669 Brachybacterium faecium 0 287 2017484 Brachybacterium sp. VM2412 0 species 1 0 Brachybacterium ginsengisoli 1331682 399 1 species no rank 1 2623841 233 0 species 1 1903186 233 0 Brachybacterium sp. P6-10-X1 Devriesea 0 83 472568 1 2 genus 1 0 Devriesea agamarum 472569 82 1 species 36 family 153 0 Micrococcaceae 1268 9134 1 genus 1 296 1269 0 species 1 1270 296 0 Micrococcus luteus 1 0 Neomicrococcus 1868332 184 22 2 genus species 1 162 556325 Neomicrococcus aestuarii 0 0 2078575 151 1 genus species 1 1618207 151 0 Arthrobacter sp. IHBB 11108 913 32207 Rothia 0 1 genus 3 8 2047 310 0 Rothia dentocariosa species 1 Rothia mucilaginosa 0 595 43675 1 species Pseudarthrobacter 0 864 1742993 1 4 genus 13 species 1 361575 218 0 Pseudarthrobacter phenanthrenivorans 0 Pseudarthrobacter sulfonivorans 121292 319 1 species 1 species 0 Pseudarthrobacter chlorophenolicus 85085 314 0 596707 264 1 genus 1 species Sinomonas atrocyanea 0 264 37927 1663 4645 0 Arthrobacter 1 genus 15 63 235627 3541 0 no rank 12 1 species Arthrobacter sp. ZXY-2 0 163 1806905 0 Arthrobacter sp. LS16 1690248 516 1 species 1 species Arthrobacter sp. YN 0 276 2020486 0 Arthrobacter sp. QXT-31 1357915 365 1 species 266 1494608 Arthrobacter sp. PAMC 25486 0 species 1 Arthrobacter sp. U41 0 434 1849032 1 species 1652545 351 0 Arthrobacter sp. YC-RL1 species 1 256 290399 Arthrobacter sp. FB24 0 species 1 Arthrobacter sp. PGP41 0 234 2079227 1 species 0 Arthrobacter sp. ATCC 21022 1771959 203 1 species 1704044 206 0 Arthrobacter sp. ERGS1:01 species 1 1 species 0 Arthrobacter sp. Rue61a 1118963 271 1 species 0 Arthrobacter alpinus 656366 430 1 species Arthrobacter crystallopoietes 0 611 37928 1 genus 0 247 1645 1 species Renibacterium salmoninarum 0 247 1646 0 Kocuria 57493 700 1 4 genus 15 1 species Kocuria flava 0 300 446860 1 species Kocuria rhizophila 0 197 72000 71999 188 0 Kocuria palustris species 1 genus 2 15 443 1742989 Glutamicibacter 0 1 Glutamicibacter arilaitensis 0 428 256701 1 species genus 1 1742992 274 0 274 43663 Paenarthrobacter aurescens 0 species 1 1643818 183 0 no rank 2 1 0 Thermobispora 147067 183 1 2 genus 1 species Thermobispora bispora 0 182 2006 2 class 5 1 323 1497346 Thermoleophilia 0 588673 321 0 Solirubrobacterales 1 order 4 23 1 0 Conexibacteraceae 320583 298 22 3 family genus 2 12 191494 276 0 Conexibacter 1 1 species Conexibacter woesei 0 264 191495 1 84998 21885 0 Coriobacteriia 173 class 28 order 13 127 7160 84999 Coriobacteriales 0 1 21 6 family 1 0 Atopobiaceae 1643824 3506 0 492 2767353 1 genus species 1 492 1382 Atopobium parvulum 0 37 genus 4 1 133925 2993 0 Olsenella 0 Olsenella uli 133926 839 1 species 0 Olsenella sp. Marseille-P2300 1805478 1564 1 species 1 no rank 0 553 2638792 species 1 553 712411 Olsenella sp. oral taxon 807 0 1 0 Coriobacteriaceae 84107 3527 109 6 family 715 84113 0 no rank 1 Coriobacteriaceae bacterium 68-1-3 0 715 1531429 1 species 1 616 33870 Coriobacterium 0 1 genus 2 1 species Coriobacterium glomerans 0 615 33871 genus 2 11 102106 2087 0 Collinsella 1 species 1 74426 2076 0 Collinsella aerofaciens 141 14 order 1 0 Eggerthellales 1643822 14552 14411 1643826 Eggerthellaceae 0 1 family 13 1949 1 genus 0 447020 1234 Adlercreutzia equolifaciens 0 1234 446660 1 species 497 84162 0 genus 1 species 1 84163 497 0 Cryptobacterium curtum 1 genus 0 1981050 2798 1 species Phoenicibacter massiliensis 0 2798 1944646 1 84111 3624 0 Eggerthella 27 genus 3 no rank 1 2648737 523 0 523 502558 Eggerthella sp. YY7918 0 species 1 1 species Eggerthella lenta 0 3074 84112 genus 2 2 79603 600 0 Denitrobacterium 1 Denitrobacterium detoxificans 0 598 79604 1 species 16 genus 3 1 2670 644652 Gordonibacter 0 1335613 1331 0 Gordonibacter urolithinfaciens species 1 Gordonibacter massiliensis 0 1323 1841863 1 species 0 84108 1039 1 genus 1039 84110 Slackia heliotrinireducens 0 species 1 0 187 84992 4 class 4 order 3 Acidimicrobiales 0 187 84993 1 1 family 0 158 2448023 1 genus 0 682522 158 1 species Ilumatobacter coccineus 0 158 467094 3 2 family 1 Acidimicrobiaceae 0 26 84994 23 53634 0 genus 1 0 Acidimicrobium ferrooxidans 53635 23 1 species 1752188 312 0 no rank 4 77 1848756 Actinobacteria bacterium IMCC26103 0 species 1 1848255 55 0 Actinobacteria bacterium IMCC25003 species 1 species 1 1848755 52 0 Actinobacteria bacterium IMCC26077 species 1 128 1848754 Actinobacteria bacterium IMCC19121 0 33768 1798711 0 clade 134 1 33768 1117 Cyanobacteria 0 19 phylum 134 33 subclass 0 8547 1301283 14 order 21 0 Oscillatoriales 1150 2775 1 1 0 Gomontiellaceae 1892255 257 2 2 family 1 genus 0 241421 255 species 1 241425 255 0 Crinalium epipsammum 1 4 family 1 Microcoleaceae 0 822 1892252 0 294 44471 1 genus 0 2642155 294 1 no rank 1 species 0 Microcoleus sp. PCC 7113 1173027 294 1 1205 527 0 Trichodesmium 1 genus 2 1 species Trichodesmium erythraeum 0 526 1206 1138 1892254 0 family 3 2 genus 0 1158 741 1 species Oscillatoria nigro-viridis 0 312 482564 0 Oscillatoria acuminata 118323 429 1 species 0 1155738 397 1 genus species 1 1155739 397 0 Moorea producens family 2 349 1892249 0 18 2 genus 1 0 Cyanothece 43988 349 0 2649277 331 1 no rank 331 395961 Cyanothece sp. PCC 7425 0 species 1 family 2 1892251 188 0 1 63132 188 0 Geitlerinema 1 genus 2 187 2648775 0 no rank 1 species 1 187 1173025 Geitlerinema sp. PCC 7407 0 0 1118 5772 19 order 5 family 7 1 1890464 1596 0 Chroococcaceae 1 genus 0 146 102231 no rank 1 146 2623012 0 1 species Gloeocapsa sp. PCC 7428 0 146 1173026 3 genus 1 0 Geminocystis 669357 1117 1 0 1116 2625037 2 no rank species 1 568 1615909 Geminocystis sp. NIES-3708 0 Geminocystis sp. NIES-3709 0 548 1617448 1 species 328 268175 Chondrocystis 0 1 genus 2 1 2648896 327 0 no rank 1 1 species 0 Chondrocystis sp. NIES-4102 2005460 327 1 3 family 1 Microcystaceae 0 1425 1890449 1125 1424 0 genus 2 1 species Microcystis aeruginosa 0 1006 1126 2643300 418 0 no rank 1 1967666 418 0 Microcystis sp. MC19 species 1 0 2039 1890450 8 family 132 1453359 0 genus 1 species 1 132 713887 Candidatus Atelocyanobacterium thalassa 0 28070 843 0 genus 2 1 species 0 264 2546359 497965 264 0 Cyanothece sp. PCC 7822 strain 1 2546356 579 0 species 1 strain 1 579 65393 Cyanothece sp. PCC 7424 0 0 263510 261 1 genus species 1 261 2546360 0 43989 261 0 Cyanothece sp. ATCC 51142 strain 1 2546365 535 0 genus 2 2 species 0 535 2546366 strain 1 41431 276 0 Cyanothece sp. PCC 8801 259 395962 Cyanothece sp. PCC 8802 0 strain 1 0 92682 268 2 no rank 2 genus 13 0 Halothece 76023 268 1 1 no rank 0 255 2632878 65093 255 0 Halothece sp. PCC 7418 species 1 0 712 1890452 1 family genus 1 102234 712 0 species 1 712 379064 Cyanobacterium aponinum 0 1 Nostocales 0 11385 1161 5 31 order 8 family 0 2661849 3132 Calothrix 0 3132 1186 1 8 genus 30 0 2619626 2800 6 no rank 1 species Calothrix sp. NIES-3974 0 466 2005462 564 2005469 Calothrix sp. NIES-4071 0 species 1 species 1 1954171 372 0 Calothrix sp. NIES-2098 Calothrix sp. 336/3 0 520 1337936 1 species 429 99598 Calothrix sp. PCC 7507 0 species 1 species 1 2005461 449 0 Calothrix sp. NIES-4101 1 species Calothrix parietina 0 302 32054 1 family 0 224 1892263 genus 1 1190 224 0 224 494603 0 no rank 1 224 1752063 Fischerella sp. NIES-3754 0 species 1 1 1185 707 0 Rivulariaceae 20 family 3 373984 687 0 Rivularia 1 genus 2 3 1 no rank 0 2676603 684 1 species Rivularia sp. PCC 7116 0 684 373994 1 Nostocaceae 0 6934 1162 11 17 family 0 Anabaena 1163 1438 1 4 genus 17 0 Anabaena cylindrica 1165 589 1 species 2619674 832 0 no rank 2 0 Anabaena sp. WA102 1647413 371 1 species 46234 461 0 Anabaena sp. 90 species 1 2 genus 0 698 264688 1164 292 0 Trichormus azollae species 1 species 1 406 264691 Trichormus variabilis 0 10 genus 30 Nostoc 0 4787 1177 1 species 1 272131 578 0 Nostoc punctiforme 1 species Nostoc flagelliforme 0 1165 1306274 7 no rank 0 2593658 3014 1618022 472 0 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' species 1 1869241 535 0 Nostoc sp. CENA543 species 1 1 species 0 Nostoc sp. PCC 7120 103690 514 0 Nostoc sp. NIES-3756 1751286 180 1 species species 1 260 317936 Nostoc sp. PCC 7107 0 1 species 0 Nostoc sp. PCC 7524 28072 481 1261031 572 0 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 1 no rank 1 383 1219117 0 species 1 383 1940762 Nostocales cyanobacterium HT-58-2 0 0 Pleurocapsales 52604 1034 1 6 order 1 Hyellaceae 0 306 1890500 1 2 family 1 1 genus 0 44474 305 1 species Pleurocapsa minor 0 305 54308 1 1890498 727 0 Dermocarpellaceae 1 family 3 102115 726 0 genus 2 no rank 1 293 2642663 0 1 species Stanieria sp. NIES-3757 0 293 1807358 1 species 0 Stanieria cyanosphaera 102116 433 6 class 7 Gloeobacteria 0 683 307596 1 6 5 order 1 Gloeobacterales 0 676 307595 1 670 1890422 Gloeobacteraceae 0 11 family 4 4 genus 3 1 33071 659 0 Gloeobacter species 1 346 1416614 Gloeobacter kilaueensis 0 33072 309 0 Gloeobacter violaceus species 1 120 order 55 1 1890424 11581 0 Synechococcales 1890436 105 0 Pseudanabaenaceae 1 family 3 2 1 1152 103 0 Pseudanabaena 1 genus 2 1 no rank 0 2593292 102 species 1 82654 102 0 Pseudanabaena sp. PCC 7367 0 1890429 345 2 family 155977 345 0 Acaryochloris 1 genus 2 1 1 species 0 Acaryochloris marina 155978 344 3 family 5 1 2458 1213 Prochloraceae 0 4 genus 1 0 Prochlorococcus 1218 2455 1 1 species 0 Prochlorococcus marinus 1219 1971 no rank 2 2627481 483 0 species 1 311 1501268 Prochlorococcus sp. MIT 0604 0 Prochlorococcus sp. MIT 0801 0 172 1501269 1 species 12 33 family 1 Synechococcaceae 0 6652 1890426 genus 26 54 4908 1129 Synechococcus 0 1 no rank 23 2626047 3803 0 32049 136 0 Synechococcus sp. PCC 7002 species 1 0 Synechococcus sp. KORDI-100 1280380 286 1 species 1 species Synechococcus sp. CC9311 0 105 64471 1 species 0 Synechococcus sp. WH 7803 32051 151 species 1 126 585425 Synechococcus sp. KORDI-52 0 Synechococcus sp. KORDI-49 0 168 585423 1 species 110662 188 0 Synechococcus sp. CC9605 species 1 308 1173263 Synechococcus sp. PCC 7502 0 species 1 Synechococcus sp. PCC 73109 0 232 374982 1 species 140 1827144 Synechococcus sp. NIES-970 0 species 1 species 1 131 374981 Synechococcus sp. PCC 7003 0 0 Synechococcus sp. CC9902 316279 64 1 species 148 321332 Synechococcus sp. JA-2-3B'a(2-13) 0 species 1 species 1 195253 71 0 Synechococcus sp. PCC 6312 1 species 0 Synechococcus sp. SynAce01 1916956 168 species 1 97 195498 Synechococcus sp. PCC 7117 0 Synechococcus sp. UTEX 2973 0 109 1350461 1 species species 1 166314 154 0 Synechococcus sp. WH 8109 244 29410 Synechococcus sp. WH 8103 0 species 1 Synechococcus sp. PCC 8807 0 129 195248 1 species 1 species Synechococcus sp. RCC307 0 132 316278 species 1 215 84588 Synechococcus sp. WH 8102 0 0 Synechococcus sp. JA-3-3Ab 321327 301 1 species 1 species 0 Synechococcus elongatus 32046 147 0 Synechococcus lividus 33070 904 1 species genus 1 32 146785 0 species 1 32 146786 Thermosynechococcus elongatus 0 2 genus 4 Dactylococcopsis 0 613 13034 1 0 Dactylococcopsis salina 292566 609 1 species 82 genus 3 1 167375 1087 0 Cyanobium 1 species Cyanobium gracile 0 484 59930 2627006 521 0 no rank 1 species 1 1851505 521 0 Cyanobium sp. NIES-981 0 157 2303730 1 family 157 170610 0 genus 1 0 Halomicronema hongdechloris 1209493 157 1 species family 6 5 998 1890438 Leptolyngbyaceae 0 1 5 genus 1 0 Leptolyngbya 47251 993 1 1 species Leptolyngbya boryana 0 212 1184 2650499 780 0 no rank 3 111781 234 0 Leptolyngbya sp. PCC 7376 species 1 0 Leptolyngbya sp. NIES-3755 1752064 233 1 species 313 1080068 Leptolyngbya sp. O-77 0 species 1 1890428 746 0 family 4 genus 4 5 746 1142 Synechocystis 0 1 0 2640012 741 3 no rank 250 1148 Synechocystis sp. PCC 6803 0 species 1 Synechocystis sp. IPPAS B-1465 0 250 2116702 1 species 0 Synechocystis sp. PCC 6714 1147 241 1 species 0 322 1983111 1 no rank species 1 322 718217 cyanobacterium endosymbiont of Epithemia turgida 0 1 order 0 197 1890505 197 1890528 0 family 1 54298 197 0 genus 1 Chroococcidiopsis thermalis 0 197 54299 1 species 2 clade 0 164 2498710 67814 164 0 phylum 2 2 class 0 164 693071 0 693072 164 2 order 0 164 693073 2 family 1 genus 2 1 164 693074 Caldisericum 0 0 Caldisericum exile 693075 163 1 species phylum 6 200940 932 0 67799 932 0 class 6 188710 932 0 order 6 Thermodesulfobacteriaceae 0 932 188711 1 6 family 1 genus 1 283 241192 0 1 species Thermodesulfatator indicus 0 283 171695 3 genus 1 0 Thermodesulfobacterium 1740 431 1 Thermodesulfobacterium geofontis 0 243 1295609 1 species 187 1741 Thermodesulfobacterium commune 0 species 1 1 genus 0 217 444090 1 species Caldimicrobium thiodismutans 0 217 1653476 7 phylum 0 2296 200930 2 7 class 1 Deferribacteres 0 2296 68337 8 6 order 1 Deferribacterales 0 2294 191393 191394 2286 0 Deferribacteraceae 1 family 5 4 1 genus 0 53572 791 791 197162 Deferribacter desulfuricans 0 species 1 598 117999 0 genus 1 598 118000 Denitrovibrio acetiphilus 0 species 1 1 genus 0 2351 373 2352 373 0 Flexistipes sinusarabici species 1 1 genus 0 520 545865 0 Calditerrivibrio nitroreducens 477976 520 1 species 10 phylum 0 508458 2908 class 10 6 649775 2908 0 Synergistia 1 18 order 9 1 649776 2902 0 Synergistales 1 0 Synergistaceae 649777 2884 546 8 family 0 138 336260 1 genus Thermovirga lienii 0 138 336261 1 species 0 127 81461 1 genus 1 species 0 Thermanaerovibrio acidaminovorans 81462 127 2 genus 1 Acetomicrobium 0 104 49894 1 0 Acetomicrobium mobile 97477 103 1 species 4 2 genus 1 0 Cloacibacillus 508459 1833 1 species Cloacibacillus porcorum 0 1829 1197717 0 81466 136 1 genus 1 species 0 Aminobacterium colombiense 81468 136 2 no rank 0 258 2323 2 clade 0 1783234 258 1 phylum 0 95818 92 1 no rank 0 1895827 92 1 species 0 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 2056494 92 0 95901 166 1 clade class 1 166 2497643 0 2497644 166 0 order 1 166 2497645 0 family 1 166 1551504 0 genus 1 673862 166 0 Candidatus Babela massiliensis species 1 phylum 13 1871 40117 0 13 class 11 0 Nitrospira 203693 1871 1 40 12 order 1 Nitrospirales 0 1860 189778 1 189779 1820 0 Nitrospiraceae 29 family 11 1 genus 5 1 883 1234 Nitrospira 0 species 1 280 42253 Nitrospira moscoviensis 0 species 1 144 1715989 Candidatus Nitrospira inopinata 0 species 1 233 1325564 Nitrospira japonica 0 Nitrospira defluvii 0 225 330214 1 species 0 520 179 3 genus 0 161 655606 1 species group 161 180 Leptospirillum ferrooxidans 0 species 1 0 261385 116 1 species group species 1 116 1660083 Leptospirillum sp. Group II 'CF-1' 0 1 species group 0 261386 243 species 1 243 178606 Leptospirillum ferriphilum 0 1 2 genus 1 Thermodesulfovibrio 0 388 28261 Thermodesulfovibrio yellowstonii 0 387 28262 1 species 149 2138240 0 phylum 1 1 class 0 2138243 149 1 order 0 149 2138246 2138247 149 0 family 1 1 genus 0 68335 149 Coprothermobacter proteolyticus 0 149 35786 1 species 0 3735 200783 25 phylum 1 Aquificae 0 3735 187857 34 25 class 20 order 0 3094 32069 14 family 3 0 Aquificaceae 64898 1442 1 118 2713 Aquifex 0 1 genus 2 1 1 species 0 Aquifex aeolicus 63363 117 59 genus 6 1 168657 1026 0 Hydrogenobaculum 5 no rank 0 2622382 967 1 species Hydrogenobaculum sp. Y04AAS1 0 314 380749 0 Hydrogenobaculum sp. 3684 547143 154 1 species 1 species Hydrogenobaculum sp. SN 0 191 547146 154 547144 Hydrogenobaculum sp. HO 0 species 1 species 1 154 547145 Hydrogenobaculum sp. SHO 0 genus 3 1 194 75905 Thermocrinis 0 1 136094 158 0 Thermocrinis albus species 1 1 species 0 Thermocrinis ruber 75906 35 939 101 0 Hydrogenobacter 1 genus 2 1 species 1 100 940 Hydrogenobacter thermophilus 0 1 1544 224027 Hydrogenothermaceae 0 1 family 5 1 3 genus 1 Sulfurihydrogenibium 0 1203 212790 2619248 685 0 no rank 1 1 species Sulfurihydrogenibium sp. YO3AOP1 0 685 436114 species 1 517 309806 Sulfurihydrogenibium azorense 0 1 genus 0 340 182899 0 Persephonella marina 309805 340 1 species 0 90150 108 1 no rank 1 genus 0 108 412592 108 412593 Thermosulfidibacter takaii 0 species 1 1 0 Desulfurobacteriales 1485951 607 1 4 order family 3 606 558314 0 1 genus 0 71 171868 Thermovibrio ammonificans 0 71 228745 1 species 0 Desulfurobacterium 64159 535 1 2 genus 1 534 64160 Desulfurobacterium thermolithotrophum 0 species 1 1 Proteobacteria 0 714660 1224 213 1925 phylum 318 class 340 1 103824 28216 Betaproteobacteria 0 10951 206351 Neisseriales 0 1 order 35 111 44 family 21 1 481 6716 0 Neisseriaceae genus 1 1193515 268 0 species 1 1196083 268 0 Snodgrassella alvi 1 Eikenella 0 304 538 1 2 genus Eikenella corrodens 0 303 539 1 species no rank 1 421605 344 0 1 species Neisseriaceae bacterium DSM 100970 0 344 2052837 4 3 genus 1 0 Vitreoscilla 59 500 268 63 Vitreoscilla filiformis 0 species 1 228 2627922 0 no rank 1 1 species 0 Vitreoscilla sp. C1 96942 228 370 71 0 genus 1 370 72 Simonsiella muelleri 0 species 1 222 12 genus 1 0 Neisseria 482 4886 Neisseria lactamica 0 354 486 1 species 1 species 0 Neisseria gonorrhoeae 485 367 2623750 823 0 no rank 2 species 1 327 1853276 Neisseria sp. 10022 0 655307 496 0 Neisseria sp. KEM232 species 1 1853278 376 0 Neisseria sp. 10023 species 1 Neisseria meningitidis 0 1399 487 1 species species 1 149 495 Neisseria elongata 0 species 1 326523 323 0 Neisseria zoodegmatis Neisseria sicca 0 377 490 1 species Neisseria mucosa 0 230 488 1 species 266 28091 Neisseria weaveri 0 species 1 Chromobacteriaceae 0 4124 1499392 1 13 family 74 671 187 Aquaspirillum 0 1 genus 2 1 no rank 1 670 2620219 0 species 1 1938604 670 0 Aquaspirillum sp. LM1 90153 2099 0 no rank 4 23 4 genus 1 0 Chromobacterium 535 2099 1 species Chromobacterium vaccinii 0 1070 1108595 Chromobacterium violaceum 0 463 536 1 species 1 no rank 0 2641838 543 Chromobacterium sp. ATCC 53434 0 543 2059672 1 species 4 2 genus 1 Laribacter 0 417 168470 species 1 413 168471 Laribacter hongkongensis 0 55 2 genus 1 Pseudogulbenkiania 0 598 568394 0 543 2642558 1 no rank 543 748280 Pseudogulbenkiania sp. NH8B 0 species 1 Jeongeupia 0 265 885864 1 2 genus 5 260 2619593 0 no rank 1 260 1906741 Jeongeupia sp. USM3 0 species 1 0 33809 358 2 no rank 1 species 0 Betaproteobacteria bacterium GR16-43 1904640 237 species 1 121 543913 beta proteobacterium CB 0 order 22 164 206389 5398 0 Rhodocyclales 1 family 3 1 2008795 632 0 Azonexaceae 1 1 Dechloromonas 0 631 73029 1 2 genus 630 259537 Dechloromonas aromatica 0 species 1 1 1223 75787 Rhodocyclaceae 0 37 family 6 551759 325 0 Aromatoleum 1 genus 2 20 species 1 551760 305 0 Aromatoleum aromaticum 0 75788 259 1 no rank species 1 259 1898103 Rhodocyclaceae bacterium 0 1 Azospira 0 602 146937 6 2 genus 146939 596 0 Azospira oryzae species 1 77 12 family 1 Zoogloeaceae 0 3379 2008794 1 Thauera 0 1905 33057 25 6 genus 840 2609274 0 no rank 2 384 85643 Thauera sp. MZ1T 0 species 1 2005884 456 0 Thauera sp. K11 species 1 Thauera humireducens 0 445 1134435 1 species 1 species Thauera aromatica 0 329 59405 96773 266 0 Thauera chlorobenzoica species 1 5 genus 31 0 Azoarcus 12960 1397 1 1 species Azoarcus olearius 0 240 418699 0 2629479 717 2 no rank species 1 315 198107 Azoarcus sp. CIB 0 species 1 748247 402 0 Azoarcus sp. KH32C Azoarcus sp. SY39 0 409 2067960 1 species 11 no rank 0 119066 1276 1 798 33055 Kinetoplastibacterium 0 9 genus 6 Kinetoplastibacterium blastocrithidii 0 58 233181 1 species species 1 994696 87 0 Candidatus Kinetoplastibacterium oncopeltii species 1 273 994695 Candidatus Kinetoplastibacterium galatii 0 Candidatus Kinetoplastibacterium crithidii 0 98 33056 1 species 994692 273 0 Candidatus Kinetoplastibacterium desouzaii species 1 genus 1 135 1381133 0 species 1 135 669502 Candidatus Profftella armatura 0 12 genus 2 1 327159 318 0 Candidatus Accumulibacter 0 Candidatus Accumulibacter phosphatis 327160 306 1 species 0 189384 2 1 genus species 1 2 189385 Candidatus Tremblaya princeps 0 1 genus 0 23 1301080 1 species Candidatus Nasuia deltocephalinicola 0 23 1160784 746 228 order 1 Burkholderiales 0 78385 80840 1 Oxalobacteraceae 0 11479 75682 100 29 family 25 genus 7 1 2923 29580 Janthinobacterium 0 Janthinobacterium svalbardensis 0 507 368607 1 species species 1 55508 607 0 Janthinobacterium agaricidamnosum no rank 4 2610881 1784 0 species 1 511 1644131 Janthinobacterium sp. 1_2014MBL_MicDiv 0 species 1 1236179 516 0 Janthinobacterium sp. B9-8 species 1 401 1938606 Janthinobacterium sp. LM6 0 375286 356 0 Janthinobacterium sp. Marseille species 1 2662 149698 Massilia 0 1 genus 6 64 2609279 1219 0 no rank 2 species 1 483 1707785 Massilia sp. WG5 0 species 1 736 1678028 Massilia sp. NR 4-1 0 2072590 564 0 Massilia sp. ZMN-3 species 1 2045208 400 0 Massilia sp. B2 species 1 1141883 415 0 Massilia putida species 1 genus 2 1 486 846 Oxalobacter 0 1 847 485 0 Oxalobacter formigenes species 1 25 3 genus 1 0 Herminiimonas 303379 561 0 Herminiimonas arsenicoxydans 204773 277 1 species 0 Herminiimonas arsenitoxidans 1809410 259 1 species genus 4 13 202907 1690 0 Collimonas 1 1 species 0 Collimonas fungivorans 158899 542 1 species Collimonas pratensis 0 449 279113 1 species 0 Collimonas arenae 279058 686 1 0 Herbaspirillum 963 3057 113 6 genus Herbaspirillum rubrisubalbicans 0 355 80842 1 species 1 species Herbaspirillum hiltneri 0 603 341045 508 92645 Herbaspirillum frisingense 0 species 1 no rank 1 640 2624150 0 Herbaspirillum sp. meg3 0 640 2025949 1 species 0 Herbaspirillum seropedicae 964 838 1 species 1 80864 18601 0 Comamonadaceae 347 family 57 genus 2 2 364316 310 0 Verminephrobacter 1 1 species Verminephrobacter eiseniae 0 308 364317 1274 28065 Rhodoferax 0 1 genus 5 8 species 1 81479 223 0 Rhodoferax antarcticus Rhodoferax ferrireducens 0 239 192843 1 species species 1 1484693 267 0 Rhodoferax saidenbachensis Rhodoferax koreense 0 537 1842727 1 species 1 2 genus 1 Simplicispira 0 202 352450 species 1 2109915 201 0 Simplicispira sp. SC1-8 genus 2 792 219181 0 1 species 0 Ottowia sp. KADR8-3 2109914 457 no rank 1 2645081 335 0 335 1658672 Ottowia sp. oral taxon 894 0 species 1 4 genus 21 Comamonas 0 1785 283 1 0 Comamonas serinivorans 1082851 448 1 species 472 225992 Comamonas kerstersii 0 species 1 1 species Comamonas testosteroni 0 844 285 2961 12916 Acidovorax 0 1 genus 9 252 1 species 0 Acidovorax avenae 80867 339 80869 278 0 Acidovorax citrulli species 1 species 1 721785 323 0 Acidovorax ebreus 0 1401 2684926 4 no rank 232721 334 0 Acidovorax sp. JS42 species 1 species 1 1842533 320 0 Acidovorax sp. RAC01 444 358220 Acidovorax sp. KKS102 0 species 1 1 species 0 Acidovorax sp. T1 1858609 303 368 553814 Acidovorax sp. NA3 0 species 1 4 genus 7 Hydrogenophaga 0 1194 47420 1 species 1 1763535 365 0 Hydrogenophaga crassostreae 2 no rank 0 822 2610897 1 species Hydrogenophaga sp. PBC 0 376 795665 species 1 1842537 446 0 Hydrogenophaga sp. RAC07 2 genus 3 1 665874 489 0 Limnohabitans 2 no rank 0 487 2626134 1 species Limnohabitans sp. 63ED37-2 0 285 1678128 species 1 202 1678129 Limnohabitans sp. 103DPR2 0 2 genus 0 349 2490452 1458426 169 0 Comamonadaceae bacterium B1 species 1 0 Comamonadaceae bacterium A1 1458425 180 1 species 371 2678886 0 genus 1 0 Melaminivora sp. SC2-7 2116657 371 1 species genus 2 5 362 1649468 Melaminivora 0 1 0 2641902 357 1 no rank 1 species 0 Melaminivora sp. SC2-9 2109913 357 1 1130 52972 Polaromonas 0 16 genus 3 1 no rank 0 671 2638319 species 1 296591 671 0 Polaromonas sp. JS666 Polaromonas naphthalenivorans 0 443 216465 1 species genus 5 34 2644 34072 Variovorax 0 1 436515 403 0 Variovorax boronicumulans species 1 1291 34073 Variovorax paradoxus 0 species 1 2 no rank 0 916 663243 1 species Variovorax sp. PMC12 0 562 2126319 species 1 354 1795631 Variovorax sp. PAMC 28711 0 1 0 Delftia 80865 2467 58 5 genus species 1 602 180282 Delftia tsuruhatensis 0 2 no rank 0 1211 2613839 742013 673 0 Delftia sp. Cs1-4 species 1 538 1920191 Delftia sp. HK171 0 species 1 1 species 0 Delftia acidovorans 80866 596 0 210 1436289 1 genus 1 species 0 Candidatus Symbiobacter mobilis 1436290 210 genus 2 5 201096 605 0 Alicycliphilus 1 179636 600 0 Alicycliphilus denitrificans species 1 0 Diaphorobacter 238749 339 1 2 genus 2 1 species Diaphorobacter polyhydroxybutyrativorans 0 337 1546149 1 0 Ramlibacter 174951 770 3 2 genus species 1 767 94132 Ramlibacter tataouinensis 0 1 Burkholderiaceae 0 28025 119060 212 83 family 106589 4476 0 Cupriavidus 1 genus 9 98 Cupriavidus metallidurans 0 389 119219 1 species 106590 824 0 Cupriavidus necator species 1 0 Cupriavidus pinatubonensis 248026 308 1 species 691 367825 Cupriavidus sp. USMAA1020 0 species 1 630 68895 Cupriavidus basilensis 0 species 1 1 species 0 Cupriavidus gilardii 82541 235 1301 2640874 0 no rank 2 Cupriavidus sp. USMAA2-4 0 659 876364 1 species species 1 1389192 642 0 Cupriavidus sp. USMAHM13 48736 3311 0 Ralstonia 1 genus 5 137 Ralstonia insidiosa 0 472 190721 1 species 0 Ralstonia solanacearum 305 1292 1 species species 1 919 329 Ralstonia pickettii 0 0 Ralstonia mannitolilytica 105219 491 1 species 1 genus 0 348 1827195 0 Burkholderia sp. RPE64 758793 348 1 species 3 genus 0 44013 397 1 species Polynucleobacter duraquae 0 128 1835254 45 576610 Polynucleobacter necessarius 0 species 1 576611 224 0 Polynucleobacter asymbioticus species 1 2382 93217 Pandoraea 0 1 genus 10 40 species 1 348 93219 Pandoraea norimbergensis 0 1 species 0 Pandoraea apista 93218 240 species 1 656179 216 0 Pandoraea faecigallinarum 1 species Pandoraea sputorum 0 237 93222 445709 163 0 Pandoraea thiooxydans species 1 281 573737 Pandoraea oxalativorans 0 species 1 1 species 0 Pandoraea pulmonicola 93221 236 species 1 256 656178 Pandoraea vervacti 0 Pandoraea pnomenusa 0 365 93220 1 species 491 41 genus 1 0 Burkholderia 32008 13058 1 species Burkholderia plantarii 0 339 41899 1803 111527 0 species group 7 Burkholderia mallei 0 146 13373 1 species 342113 315 0 Burkholderia oklahomensis species 1 1 species 0 Burkholderia sp. MSMB0266 1637837 156 Burkholderia sp. MSMB0852 0 140 1637841 1 species 1 species Burkholderia pseudomallei 0 489 28450 57975 400 0 Burkholderia thailandensis species 1 1 species Burkholderia sp. MSMB617WGS 0 157 1637831 28095 885 0 Burkholderia gladioli species 1 0 Burkholderia glumae 337 640 1 species 0 2441 2613784 11 no rank 1 species Burkholderia sp. KJ006 0 215 416344 species 1 110 1468409 Burkholderia sp. 2002721687 0 114 1740163 Burkholderia sp. Bp7605 0 species 1 1 species Burkholderia sp. YI23 0 239 1097668 Burkholderia sp. PAMC 26561 0 342 1795043 1 species 1 species Burkholderia sp. Bp5365 0 116 1740162 640510 210 0 Burkholderia sp. CCGE1001 species 1 0 Burkholderia sp. PAMC 28687 1795874 357 1 species species 1 192 758796 Burkholderia sp. RPE67 0 1 species Burkholderia sp. CCGE1003 0 307 640512 species 1 1678678 239 0 Burkholderia sp. HB1 0 6459 87882 19 species group [Pseudomonas] mesoacidophila 0 305 265293 1 species 60552 282 0 Burkholderia vietnamiensis species 1 1503055 157 0 Burkholderia territorii species 1 species 1 264 152480 Burkholderia ambifaria 0 488729 132 0 Burkholderia metallica species 1 species 1 209 1207504 Burkholderia pseudomultivorans 0 0 Burkholderia multivorans 87883 452 1 species 1 species Burkholderia stabilis 0 362 95485 species 1 141 152500 Burkholderia dolosa 0 species 1 60550 131 0 Burkholderia pyrrocinia species 1 488732 189 0 Burkholderia diffusa 488447 179 0 Burkholderia contaminans species 1 202 488731 Burkholderia seminalis 0 species 1 0 Burkholderia cenocepacia 95486 1170 1 species 0 Burkholderia lata 482957 301 1 species 292 1082 0 Burkholderia cepacia species 1 species 1 488446 182 0 Burkholderia latens species 1 101571 579 0 Burkholderia ubonensis species 1 1503054 140 0 Burkholderia stagnalis 35 12 genus 1 0 Paraburkholderia 1822464 3754 Paraburkholderia caribensis 0 329 75105 1 species 1 species Paraburkholderia phytofirmans 0 302 261302 no rank 1 2615204 319 0 1926494 319 0 Paraburkholderia sp. SOS3 species 1 species 1 252970 214 0 Paraburkholderia phenoliruptrix 2026199 370 0 Paraburkholderia aromaticivorans species 1 species 1 457 36873 Paraburkholderia xenovorans 0 324 311230 Paraburkholderia terrae 0 species 1 1 species Paraburkholderia sprentiae 0 351 948107 134537 223 0 Paraburkholderia fungorum species 1 1 species Paraburkholderia phymatum 0 554 148447 276 169430 Paraburkholderia hospita 0 species 1 2571159 87 0 genus 1 0 Paraburkholderia rhizoxinica 412963 87 1 species 2 no rank 0 80841 963 Burkholderiales bacterium YL45 0 747 1834205 1 species 0 Burkholderiales bacterium GJ-E10 1469502 216 1 species 14212 506 Alcaligenaceae 0 1 family 39 189 570 290425 0 genus 2 0 Advenella kashmirensis 310575 338 1 species Advenella mimigardefordensis 0 232 302406 1 species 1 Castellaniella 0 427 359336 18 2 genus species 1 75697 409 0 Castellaniella defragrans 16 2 genus 1 0 Alcaligenes 507 493 0 Alcaligenes faecalis 511 477 1 species 0 Bordetella 517 6020 1 17 genus 223 463014 329 0 Bordetella flabilis species 1 species 1 218 521 Bordetella avium 0 1 species Bordetella genomosp. 13 0 367 463040 species 1 518 682 0 Bordetella bronchiseptica 1 species Bordetella genomosp. 6 0 364 463024 1 no rank 0 2630031 217 1 species 0 Bordetella sp. H567 1697043 217 0 Bordetella trematum 123899 308 1 species 519 338 0 Bordetella parapertussis species 1 species 1 227 1416803 Bordetella genomosp. 9 0 0 Bordetella genomosp. 8 1416806 631 1 species 0 Bordetella holmesii 35814 152 1 species species 1 94624 298 0 Bordetella petrii Bordetella hinzii 0 530 103855 1 species 0 Bordetella pseudohinzii 1331258 300 1 species 559 463025 Bordetella bronchialis 0 species 1 1 species Bordetella pertussis 0 277 520 0 228 305976 1 genus 0 2640016 228 1 no rank 1 species 0 Pusillimonas sp. T7-7 1007105 228 1 genus 0 156 1100891 0 Paenalcaligenes hominis 643674 156 1 species genus 2 2 1921582 436 0 Orrella 1 Orrella dioscoreae 0 434 1851544 1 species genus 1 1472344 286 0 species 1 286 1472345 Basilea psittacipulmonis 0 159 genus 6 1 4780 222 Achromobacter 0 species 1 1797 85698 Achromobacter xylosoxidans 0 species 1 957 32002 Achromobacter denitrificans 0 species 1 217204 493 0 Achromobacter insolitus 496 2626865 0 no rank 1 Achromobacter sp. AONIH1 0 496 1758194 1 species 1 species Achromobacter spanius 0 878 217203 2 genus 1 0 Oligella 90243 142 1 90245 141 0 Oligella urethralis species 1 29574 485 0 genus 2 292 29575 Taylorella equigenitalis 0 species 1 species 1 193 84590 Taylorella asinigenitalis 0 0 224471 4359 17 no rank 1 422 65047 Mitsuaria 0 18 genus 2 0 2648776 404 1 no rank species 1 404 1658665 Mitsuaria sp. 7 0 19 2 genus 1 0 Methylibium 316612 510 species 1 491 105560 Methylibium petroleiphilum 0 2 genus 7 Thiomonas 0 821 32012 1 species 1 926 814 0 Thiomonas intermedia 88 427 0 Leptothrix 1 genus 2 14 species 1 413 34029 Leptothrix cholodnii 0 2 genus 13 Roseateles 0 599 93681 1 1 species Roseateles depolymerans 0 586 76731 1 species [Polyangium] brachysporum 0 387 413882 2 genus 24 Rhizobacter 0 336 212743 1 species 1 946333 312 0 Rhizobacter gummiphilus 20 genus 2 1 503 28067 Rubrivivax 0 species 1 28068 483 0 Rubrivivax gelatinosus genus 2 24 354 318147 Paucibacter 0 1 330 2642959 0 no rank 1 1 species 0 Paucibacter sp. KCTC 42545 1768242 330 1 Nitrosomonadales 0 7138 32003 60 41 order 37 11 family 1 Nitrosomonadaceae 0 2225 206379 0 1513 914 6 genus 1 species 0 Nitrosomonas communis 44574 462 0 Nitrosomonas europaea 915 232 1 species no rank 2 444 2609265 0 0 Nitrosomonas sp. Is79A3 261292 312 1 species species 1 153948 132 0 Nitrosomonas sp. AL212 Nitrosomonas eutropha 0 205 916 1 species 1 species Nitrosomonas ureae 0 170 44577 1 675 35798 Nitrosospira 0 6 genus 4 species 1 1288494 235 0 Nitrosospira lacus 35799 265 0 Nitrosospira briensis species 1 1 species 0 Nitrosospira multiformis 1231 169 1 179 2008790 Thiobacillaceae 0 4 family 3 1 0 Thiobacillus 919 175 3 2 genus 172 36861 Thiobacillus denitrificans 0 species 1 1 729 2008793 Sterolibacteriaceae 0 8 family 5 7 genus 2 1 378210 329 0 Methyloversatilis 2639971 322 0 no rank 1 Methyloversatilis sp. RAC08 0 322 1842540 1 species 10 2 genus 1 Sulfuritalea 0 392 1054211 species 1 748811 382 0 Sulfuritalea hydrogenivorans family 12 7 2428 32011 Methylophilaceae 0 1 0 Methylotenera 359407 370 1 3 genus 1 272 1055487 Methylotenera versatilis 0 species 1 0 Methylotenera mobilis 359408 97 1 species 148 404 0 genus 1 148 405 Methylobacillus flagellatus 0 species 1 3 genus 2 0 Methylovorus 81682 943 1 1 no rank 0 2634027 556 0 Methylovorus sp. MP688 887061 556 1 species species 1 385 266009 Methylovorus glucosotrophus 0 1679002 479 0 genus 2 0 Candidatus Methylopumilus planktonicus 1581557 205 1 species 0 Candidatus Methylopumilus turicensis 1581680 274 1 species 16 481 0 Methylophilus 1 genus 2 3 1 no rank 0 2630143 478 0 Methylophilus sp. TWE2 1662285 478 1 species 1 0 Gallionellaceae 90627 1037 7 5 family 2 genus 2 0 Sideroxydans 314343 343 1 63745 341 0 Sideroxydans lithotrophicus species 1 2 genus 7 Gallionella 0 687 96 1 Gallionella capsiferriformans 0 680 370405 1 species 480 2772226 0 family 4 1 0 Sulfuriferula 1778653 320 2 2 genus 0 2637784 318 1 no rank species 1 1985873 318 0 Sulfuriferula sp. AH1 Sulfuricella 0 160 935200 1 2 genus 1 species 1 159 649841 Sulfuricella denitrificans 0 6 class 0 542 1807140 8 order 6 1 542 225057 Acidithiobacillales 0 0 Acidithiobacillaceae 225058 534 1 5 family 6 10 4 genus 1 0 Acidithiobacillus 119977 528 Acidithiobacillus ferrivorans 0 215 160808 1 species 1 species Acidithiobacillus ferrooxidans 0 183 920 species 1 33059 120 0 Acidithiobacillus caldus class 848 457 422252 1236 Gammaproteobacteria 0 1 1 4856 118969 Legionellales 0 12 order 19 1 278 118968 Coxiellaceae 0 1 family 4 0 134284 88 1 no rank 1 species Coxiella-like endosymbiont 0 88 1592897 genus 2 189 776 0 no rank 1 2676648 51 0 0 Coxiella endosymbiont of Amblyomma americanum 325775 51 1 species species 1 777 138 0 Coxiella burnetii family 14 4 444 4566 0 Legionellaceae 1 6 12 genus 1 Legionella 0 4225 445 Legionella fallonii 0 539 96230 1 species species 1 446 1236 0 Legionella pneumophila 1 species Legionella spiritensis 0 128 452 Legionella longbeachae 0 271 450 1 species 1 species 0 Legionella waltersii 66969 260 species 1 1867846 257 0 Legionella clemsonensis 626 29423 Legionella oakridgensis 0 species 1 2005262 117 0 Legionella endosymbiont of Polyplax serrata species 1 Legionella hackeliae 0 261 449 1 species 1 species 0 Legionella lansingensis 45067 223 1 species 0 Legionella sainthelensi 28087 301 genus 1 465 337 0 451 337 0 Tatlockia micdadei species 1 2 order 0 67 135615 1 0 Cardiobacteriaceae 868 67 2 2 family genus 1 869 65 0 species 1 870 65 0 Dichelobacter nodosus 823 1240482 0 order 3 family 3 2 1240483 823 0 Orbaceae 1 449 1193503 0 genus 1 0 Gilliamella apicola 1196095 449 1 species 0 1335631 372 1 genus 0 Frischella perrara 1267021 372 1 species no rank 11 118884 1775 0 417 198346 0 clade 1 417 186490 Candidatus Baumannia cicadellinicola 0 species 1 0 1524249 246 1 genus Pseudohongiella spirulinae 0 246 1249552 1 species genus 2 126 655184 0 0 Candidatus Thioglobus singularis 1427364 48 1 species 1 species Candidatus Thioglobus autotrophicus 0 78 1705394 2 genus 7 Thiolapillus 0 287 1608298 1 Thiolapillus brandeum 0 280 1076588 1 species 1 244 349742 Sedimenticola 0 1 genus 2 1 species 0 Sedimenticola thiotaurini 1543721 243 3 clade 0 455 32036 162 1541743 0 genus 1 Candidatus Ruthia magnifica 0 162 386487 1 species species 1 410330 177 0 Calyptogena okutanii thioautotrophic gill symbiont Bathymodiolus septemdierum thioautotrophic gill symbiont 0 116 113267 1 species 218 51 order 1 0 Xanthomonadales 135614 20116 0 Xanthomonadaceae 32033 16700 1 37 family 179 0 251 83614 1 genus 0 Luteimonas sp. 100111 2006110 251 1 species 21 genus 3 1 83618 810 0 Pseudoxanthomonas species 1 242 415229 Pseudoxanthomonas spadix 0 1 species Pseudoxanthomonas suwonensis 0 547 314722 220 genus 9 1 40323 6077 0 Stenotrophomonas Stenotrophomonas nitritireducens 0 383 83617 1 species 196198 1789 0 no rank 4 1 species Stenotrophomonas sp. MYb57 0 271 1827305 713 1904944 Stenotrophomonas sp. LM091 0 species 1 477 1793721 Stenotrophomonas sp. KCTC 12332 0 species 1 species 1 328 2005046 Stenotrophomonas sp. WZN-1 0 128780 623 0 Stenotrophomonas acidaminiphila species 1 species group 1 995085 2732 0 Stenotrophomonas maltophilia 0 2732 40324 1 species 1 species Stenotrophomonas rhizophila 0 330 216778 27 5 genus 1 0 Lysobacter 68 1816 species 1 69 406 0 Lysobacter enzymogenes 435897 427 0 Lysobacter capsici species 1 423 84531 Lysobacter antibioticus 0 species 1 Lysobacter gummosus 0 533 262324 1 species 0 709 2370 1 genus 1 species 0 Xylella fastidiosa 2371 709 Xanthomonas 0 6858 338 1 17 genus 296 species group 2 643453 1617 0 519 366648 Xanthomonas fuscans 0 species 1 1098 346 Xanthomonas citri 0 species 1 1 species 0 Xanthomonas translucens 343 357 Xanthomonas vesicatoria 0 451 56460 1 species species 1 56458 379 0 Xanthomonas sacchari 1 species 0 Xanthomonas euvesicatoria 456327 249 1 species Xanthomonas perforans 0 382 442694 1 species 0 Xanthomonas campestris 339 687 1 species Xanthomonas vasicola 0 200 56459 53413 307 0 Xanthomonas axonopodis species 1 0 Xanthomonas phaseoli 1985254 207 1 species 1 species 0 Xanthomonas fragariae 48664 185 species 1 323 56454 Xanthomonas hortorum 0 1 species Xanthomonas alfalfae 0 296 366650 species 1 703 347 Xanthomonas oryzae 0 species 1 29447 219 0 Xanthomonas albilineans 13 family 97 0 Rhodanobacteraceae 1775411 3198 1 0 2233801 148 1 genus species 1 2021234 148 0 Xanthomonadales bacterium D13 1 genus 0 242605 344 344 242606 Luteibacter rhizovicinus 0 species 1 70411 471 0 Frateuria 1 genus 2 1 species 1 470 81475 Frateuria aurantia 0 2 genus 8 Dokdonella 0 537 323413 1 0 Dokdonella koreensis 323415 529 1 species 3 2 genus 1 Rhodanobacter 0 402 75309 666685 399 0 Rhodanobacter denitrificans species 1 1 Dyella 0 1199 231454 13 4 genus species 1 359 1379159 Dyella jiangningensis 0 490 445710 Dyella thiooxydans 0 species 1 1 species Dyella japonica 0 337 231455 no rank 2 577 33811 0 1 species endosymbiont of unidentified scaly snail isolate Monju 0 353 1248727 1 species gamma proteobacterium HdN1 0 224 83406 0 Aeromonadales 135624 12327 1 27 order 49 12278 84642 Aeromonadaceae 0 1 family 26 71 1 129577 924 0 Oceanimonas 3 genus 2 no rank 1 2636315 921 0 species 1 511062 921 0 Oceanimonas sp. GK1 0 225143 223 2 genus 1 species Oceanisphaera sp. AMac2203 0 101 1903694 1 species Oceanisphaera profunda 0 122 1416627 2 genus 4 0 Zobellella 347533 517 1 347534 513 0 Zobellella denitrificans species 1 genus 1 43947 848 0 0 Tolumonas auensis 43948 848 1 species genus 18 434 642 9695 0 Aeromonas 1 species 1 424 558964 Aeromonas aquatica 0 238 648 Aeromonas caviae 0 species 1 8 no rank 0 2643 257493 1 species 0 Aeromonas sp. CU5 2033033 456 1 species 0 Aeromonas sp. ASNIH5 1758179 345 species 1 221 1636606 Aeromonas sp. ASNIH1 0 406 1636609 Aeromonas sp. ASNIH4 0 species 1 0 Aeromonas sp. ASNIH7 1920107 180 1 species 325 1636608 Aeromonas sp. ASNIH3 0 species 1 1 species Aeromonas sp. ASNIH2 0 283 1636607 1 species Aeromonas sp. CA23 0 427 2033032 507 196024 Aeromonas dhakensis 0 species 1 1 species Aeromonas media 0 269 651 species 1 645 671 0 Aeromonas salmonicida 1 species 0 Aeromonas rivipollensis 948519 466 species 1 537 652 Aeromonas schubertii 0 1 species Aeromonas veronii 0 1529 654 0 Aeromonas hydrophila 644 1977 1 species 135613 7907 0 Chromatiales 1 order 45 78 1 Granulosicoccaceae 0 512 449719 1 3 family 1 genus 2 1 437504 511 0 Granulosicoccus 437505 510 0 Granulosicoccus antarcticus species 1 0 Wenzhouxiangellaceae 1676141 304 1 3 family 1 2 genus 70 Wenzhouxiangella 0 303 1676142 1 233 1579979 Wenzhouxiangella marina 0 species 1 1 family 0 244 1738654 1 genus 0 244 1738655 0 Woeseia oceani 1548547 244 1 species 6 family 4 1 255526 596 0 Halothiobacillaceae genus 3 1 590 109262 Halothiobacillus 0 1 1 species 0 Halothiobacillus neapolitanus 927 266 2636392 323 0 no rank 1 1860122 323 0 Halothiobacillus sp. LS2 species 1 13 16 family 1 Ectothiorhodospiraceae 0 2653 72276 0 135 1765964 1 genus Acidihalobacter prosperus 0 135 160660 1 species genus 2 213 1335745 0 1 species Spiribacter salinus 0 43 1335746 1 species 0 Spiribacter curvatus 1335757 170 85108 380 0 Halorhodospira 1 genus 2 3 1 species Halorhodospira halophila 0 377 1053 6 genus 26 Thioalkalivibrio 0 1270 106633 1 no rank 1 306 2621013 0 1 species 0 Thioalkalivibrio sp. K90mix 396595 306 species 1 247 106634 Thioalkalivibrio versutus 0 species 1 135 186931 Thioalkalivibrio nitratireducens 0 1 species 0 Thioalkalivibrio paradoxus 108010 128 428 1033854 Thioalkalivibrio sulfidiphilus 0 species 1 genus 2 1 271 1051 Ectothiorhodospira 0 1 no rank 1 2684909 270 0 species 1 1442136 270 0 Ectothiorhodospira sp. BSL-9 Alkalilimnicola 0 371 133193 1 2 genus 8 species 1 363 351052 Alkalilimnicola ehrlichii 0 3095 1046 Chromatiaceae 0 1 family 15 17 0 1980513 113 1 genus Candidatus Nitrosoglobus terrae 0 113 1630141 1 species 371 82569 0 no rank 1 371 1978339 Chromatiaceae bacterium 2141T.STBD.0c.01a 0 species 1 1 0 Thiocystis 13724 250 5 2 genus species 1 73141 245 0 Thiocystis violascens genus 3 1227 772 0 species 1 205 473531 Nitrosococcus watsonii 0 1 species 0 Nitrosococcus halophilus 133539 119 1 species Nitrosococcus oceani 0 448 1229 1 Allochromatium 0 490 85072 2 2 genus species 1 1049 488 0 Allochromatium vinosum 53392 568 0 Thiodictyon 1 genus 2 2 1 species 0 Candidatus Thiodictyon syntrophicum 1166950 566 146 156885 0 genus 1 Thioflavicoccus mobilis 0 146 80679 1 species genus 2 19 85076 368 0 Marichromatium 1 349 37487 Marichromatium purpuratum 0 species 1 425 451214 0 no rank 2 genus 2 1 425 1273155 Thiohalobacter 0 1 species 1 585455 424 0 Thiohalobacter thiocyanaticus Alteromonadales 0 28439 135622 1 104 order 60 1 0 Alteromonadaceae 72275 7820 35 28 family 0 319 1621534 1 genus 1 species 0 Paraglaciecola psychrophila 326544 319 1 Marinobacter 0 3029 2742 31 10 genus species 1 2743 733 0 Marinobacter hydrocarbonoclasticus Marinobacter adhaerens 0 385 1033846 1 species Marinobacter salinus 0 322 1874317 1 species 0 839 83889 3 no rank 1 species 0 Marinobacter sp. CP1 1671721 303 Marinobacter sp. LQ44 0 421 1749259 1 species 0 Marinobacter sp. BSs20148 490759 115 1 species 1 species Marinobacter psychrophilus 0 93 330734 1420917 452 0 Marinobacter salarius species 1 174 1420916 Marinobacter similis 0 species 1 226 3386 0 Alteromonas 1 genus 10 33 1 species Alteromonas mediterranea 0 506 314275 1 species Alteromonas naphthalenivorans 0 246 715451 species 1 28108 507 0 Alteromonas macleodii 0 Alteromonas stellipolaris 233316 368 1 species species 1 287094 400 0 Alteromonas addita 3 no rank 0 2614992 1123 0 Alteromonas sp. RW2A1 1917158 322 1 species species 1 406 1777491 Alteromonas sp. Mac1 0 species 1 395 2058133 Alteromonas sp. MB-3u-76 0 1 species 0 Alteromonas australica 589873 203 89404 566 0 genus 2 species 1 221 300231 Glaciecola nitratireducens 0 2618684 345 0 no rank 1 Glaciecola sp. 4H-3-7+YE-5 0 345 983545 1 species 1 genus 2 1 261825 166 0 Agarivorans Agarivorans gilvus 0 165 680279 1 species 2 2 genus 1 Lacimicrobium 0 319 1751872 317 1526571 Lacimicrobium alkaliphilum 0 species 1 0 Moritellaceae 267891 574 1 3 family 4 570 58050 Moritella 0 1 genus 2 32 1 species Moritella viscosa 0 538 80854 family 9 7 267889 3274 0 Colwelliaceae 1 6 6 genus 1 Colwellia 0 2873 28228 no rank 3 196834 1477 0 species 1 1816219 285 0 Colwellia sp. PAMC 21821 675 58049 Colwellia sp. MT41 0 species 1 1 species 0 Colwellia sp. PAMC 20917 1816218 517 species 1 700 1967665 Colwellia beringensis 0 0 Colwellia psychrerythraea 28229 690 1 species genus 2 1 394 1518149 Thalassotalea 0 1 1 species Thalassotalea crassostreae 0 393 1763536 11 25 family 1 0 Pseudoalteromonadaceae 267888 6963 104 genus 24 1 53246 6952 0 Pseudoalteromonas 161398 180 0 Pseudoalteromonas phenolica species 1 1 species Pseudoalteromonas atlantica 0 337 288 species 1 183 176102 Pseudoalteromonas agarivorans 0 1 species Pseudoalteromonas piscicida 0 354 43662 158 28107 Pseudoalteromonas espejiana 0 species 1 0 Pseudoalteromonas tetraodonis 43659 248 1 species Pseudoalteromonas translucida 0 248 166935 1 species 267375 313 0 Pseudoalteromonas marina species 1 1 species 0 Pseudoalteromonas aliena 247523 309 307 152297 Pseudoalteromonas issachenkonii 0 species 1 0 Pseudoalteromonas luteoviolacea 43657 396 1 species no rank 5 194690 1467 0 1 species Pseudoalteromonas sp. Bsw20308 0 436 283699 1761891 233 0 Pseudoalteromonas sp. 13-15 species 1 1 species Pseudoalteromonas sp. NC201 0 267 1514074 species 1 200 234831 Pseudoalteromonas sp. SM9913 0 1 species Pseudoalteromonas sp. 1_2015MBL_MicDiv 0 331 1720343 species 1 298657 436 0 Pseudoalteromonas spongiae 394751 289 0 Pseudoalteromonas arctica species 1 43658 255 0 Pseudoalteromonas rubra species 1 1 species Pseudoalteromonas tunicata 0 388 314281 341 1348114 Pseudoalteromonas piratica 0 species 1 0 Pseudoalteromonas nigrifaciens 28109 279 1 species species 1 360 228 Pseudoalteromonas haloplanktis 0 1 Shewanellaceae 0 7278 267890 11 25 family 1 Shewanella 0 7267 22 159 24 genus Shewanella frigidimarina 0 397 56812 1 species 0 Shewanella japonica 93973 546 1 species 1 species Shewanella bicestrii 0 192 2018305 1 species 0 Shewanella violacea 60217 214 1 species Shewanella halifaxensis 0 124 271098 0 Shewanella woodyi 60961 333 1 species 60478 514 0 Shewanella amazonensis species 1 1 species 0 Shewanella denitrificans 192073 189 479 260364 Shewanella marisflavi 0 species 1 species 1 131 70864 Shewanella pealeana 0 225848 478 0 Shewanella psychrophila species 1 1 species Shewanella baltica 0 1205 62322 species 1 260 359303 Shewanella loihica 0 1 species 0 Shewanella oneidensis 70863 314 1 species Shewanella piezotolerans 0 238 404011 Shewanella sediminis 0 264 271097 1 species 196818 1028 0 no rank 6 species 1 204 351745 Shewanella sp. W3-18-1 0 1 species 0 Shewanella sp. MR-4 60480 88 1 species Shewanella sp. MR-7 0 191 60481 species 1 2029986 202 0 Shewanella sp. WE21 2059264 207 0 Shewanella sp. Pdp11 species 1 136 94122 Shewanella sp. ANA-3 0 species 1 1 species 0 Shewanella putrefaciens 24 202 family 6 41 267893 1380 0 Idiomarinaceae 1 30 genus 5 1 1339 135575 Idiomarina 0 species 1 238 135577 Idiomarina loihiensis 0 no rank 2 701 2614829 0 1 species Idiomarina sp. OT37-5b 0 430 2100422 species 1 2055892 271 0 Idiomarina sp. X4 Idiomarina piscisalsi 0 370 1096243 1 species 516 267892 Ferrimonadaceae 0 1 family 3 1 genus 2 3 515 44011 Ferrimonas 0 1 species 1 44012 512 0 Ferrimonas balearica 5 4 family 1 Psychromonadaceae 0 574 267894 67572 569 0 Psychromonas 1 genus 3 1 1 species Psychromonas ingrahamii 0 434 357794 0 134 2614957 1 no rank 314282 134 0 Psychromonas sp. CNPT3 species 1 62 order 94 0 Oceanospirillales 135619 12544 1 1 3 family 1 0 Hahellaceae 224379 205 2 genus 2 0 Hahella 158481 204 1 0 Hahella chejuensis 158327 202 1 species Kangiellaceae 0 911 1920240 1 6 family 1 1 5 genus 1 Kangiella 0 910 261963 Kangiella geojedonensis 0 112 914150 1 species species 1 210 261964 Kangiella koreensis 0 346 1144748 Kangiella sediminilitoris 0 species 1 1 species Kangiella profundi 0 241 1561924 37 28 family 1 0 Halomonadaceae 28256 6122 genus 1 279 404432 0 1 species 0 Salinicola tamaricis 1771309 279 1 0 Halomonas 2745 4398 83 15 genus Halomonas campaniensis 0 189 213554 1 species 0 2159 2609666 8 no rank species 1 478 1883416 Halomonas sp. 1513 0 1504981 190 0 Halomonas sp. KO116 species 1 Halomonas sp. GT 0 186 1971364 1 species 0 Halomonas sp. 'Soap Lake #7' 1962264 287 1 species species 1 206 1610576 Halomonas sp. R57-5 0 species 1 284 2136172 Halomonas sp. SF2003 0 Halomonas sp. 'Soap Lake #6' 0 287 1949203 1 species species 1 1118153 241 0 Halomonas sp. GFAJ-1 0 Halomonas aestuarii 1897729 497 1 species species 1 507626 276 0 Halomonas chromatireducens 0 Halomonas huangheensis 1178482 433 1 species 115561 240 0 Halomonas hydrothermalis species 1 521 475662 Halomonas beimenensis 0 species 1 42054 200 0 genus 1 0 Chromohalobacter salexigens 158080 200 1 species 0 114403 168 3 no rank genus 1 80 1495768 0 Candidatus Evansia muelleri 0 80 1495769 1 species 0 55 114185 1 genus species 1 114186 55 0 Candidatus Carsonella ruddii genus 1 33 235572 0 1 species 0 Candidatus Portiera aleyrodidarum 91844 33 genus 2 1 204286 309 0 Cobetia 1 0 Cobetia marina 28258 308 1 species 0 Halotalea 376488 137 1 2 genus 4 376489 133 0 Halotalea alkalilenta species 1 1 504090 594 0 Kushneria 5 genus 3 Kushneria marisflavi 0 272 157779 1 species Kushneria konosiri 0 317 698828 1 species 3 family 2 1 191033 340 0 Oleiphilaceae 337 141450 0 genus 1 Oleiphilus messinensis 0 337 141451 1 species 1892 224372 Alcanivoracaceae 0 1 family 8 12 1 0 Alcanivorax 59753 1674 8 6 genus species 1 1306787 552 0 Alcanivorax pacificus 1 species Alcanivorax xenomutans 0 238 1094342 1 species Alcanivorax dieselolei 0 222 285091 322 2638842 0 no rank 1 1 species Alcanivorax sp. NBRC 101098 0 322 1113728 species 1 332 59754 Alcanivorax borkumensis 0 genus 1 2025617 206 0 0 Ketobacter alkanivorans 1917421 206 1 species 11 family 32 0 Oceanospirillaceae 135620 2333 1 2 genus 4 1 28253 1209 0 Marinomonas 1 species 0 Marinomonas mediterranea 119864 474 no rank 1 369 196814 0 0 Marinomonas sp. MWYL1 400668 369 1 species 364 936476 Marinomonas posidonica 0 species 1 2 genus 1 Marinobacterium 0 259 48075 1 0 Marinobacterium aestuarii 1821621 258 1 species 0 1537406 319 1 genus 1 species Bacterioplanes sanyensis 0 319 1249553 1 genus 2 1 187492 200 0 Thalassolituus 0 Thalassolituus oleivorans 187493 199 1 species 0 188907 314 1 genus 1 species 0 Oleispira antarctica 188908 314 0 Saccharospirillaceae 255527 647 1 3 family 4 283 1445504 0 genus 1 species 1 1445505 283 0 Gynuella sunshinyii genus 1 230494 360 0 Reinekea forsetii 0 360 1336806 1 species order 29 72273 9445 0 11 family 23 Piscirickettsiaceae 0 1907 135616 1 genus 4 2 34067 610 0 Cycloclasticus 1 no rank 2 2621467 405 0 728003 207 0 Cycloclasticus sp. PY97N species 1 Cycloclasticus sp. P1 0 198 385025 1 species species 1 203 1329899 Cycloclasticus zancles 0 genus 2 420 40222 0 164 754476 Methylophaga nitratireducenticrescens 0 species 1 1 species Methylophaga frappieri 0 256 754477 1 genus 0 443 1237 species 1 1238 443 0 Piscirickettsia salmonis 2 genus 0 310 933 species 1 162 147268 Thiomicrospira cyclica 0 species 1 92245 148 0 Thiomicrospira aerophila 0 28884 101 1 genus 0 Hydrogenovibrio crunogenus 39765 101 1 species 3 family 0 135617 655 449 1021 0 genus 1 0 Beggiatoa leptomitoformis 288004 449 1 species 1 40751 206 0 Thioploca 2 genus 2 species 1 204 40754 Thioploca ingrica 0 34064 6883 0 Francisellaceae 1 family 15 3 genus 2 1 108 1869285 Allofrancisella 0 1 Allofrancisella guangzhouensis 0 107 594679 1 species 1 0 Francisella 262 6772 13 12 genus 1 species Francisella halioticida 0 453 549298 species 1 729 1542390 Francisella sp. CA97-1460 0 573569 263 0 Francisella sp. TX077308 species 1 Francisella persica 0 323 954 1 species Francisella philomiragia 0 1294 28110 1 species 2 no rank 0 799 2610885 species 1 383 475375 Francisella sp. MA067296 0 0 Francisella sp. FSC1006 1547445 416 1 species 573570 540 0 Francisella sp. TX077310 species 1 species 1 263 1037 0 Francisella tularensis 1 species Francisella hispaniensis 0 414 622488 species 1 657445 907 0 Francisella noatunensis 11 26 order 1 Cellvibrionales 0 3555 1706369 5 family 4 Microbulbiferaceae 0 724 1706373 1 4 genus 16 Microbulbifer 0 720 48073 1 species 1 231 1769779 Microbulbifer aggregans 0 Microbulbifer thermotolerans 0 259 252514 1 species 0 Microbulbifer agarilyticus 260552 214 1 species 1 family 11 1 1706371 1876 0 Cellvibrionaceae 8 genus 4 1 10 911 0 Cellvibrio 2 no rank 0 666 2624793 305 1987723 Cellvibrio sp. PSBB006 0 species 1 species 1 1945512 361 0 Cellvibrio sp. PSBB023 species 1 237 155077 Cellvibrio japonicus 0 7 genus 2 1 447467 299 0 Simiduia 292 447471 Simiduia agarivorans 0 species 1 1 genus 0 316625 237 species 1 86304 237 0 Saccharophagus degradans 1 Teredinibacter 0 102 2425 3 2 genus 1 species 0 Teredinibacter turnerae 2426 99 2036021 326 0 genus 1 species 1 1737490 326 0 Agarilytica rhodophyticola 2 4 family 1 0 Halieaceae 1706372 335 genus 3 6 333 1217416 Halioglobus 0 1 199 930806 Halioglobus pacificus 0 species 1 0 Halioglobus japonicus 930805 128 1 species 12 family 5 1 1706375 609 0 Spongiibacteraceae 0 208 1434050 1 genus 1 species Zhongshania aliphaticivorans 0 208 1470434 285 1084558 0 genus 1 Oceanicoccus sagamiensis 0 285 716816 1 species genus 2 2 104 630749 Spongiibacter 0 1 102 2631504 0 no rank 1 species 1 102 1620392 Spongiibacter sp. IMCC21906 0 5 order 11 0 Acidiferrobacterales 1692040 563 1 1 Acidiferrobacteraceae 0 552 1692041 19 4 family 1 genus 0 322 1744881 1 species Sulfuricaulis limicola 0 322 1620215 0 Sulfurifustis 1692042 211 1 2 genus 1 1675686 210 0 Sulfurifustis variabilis species 1 1 Pseudomonadales 0 59183 72274 222 129 order 42 family 22 0 Moraxellaceae 468 15976 1 37 11 genus 1 0 Psychrobacter 497 1817 330922 111 0 Psychrobacter cryohalolentis species 1 Psychrobacter alimentarius 0 195 261164 1 species species 1 45610 333 0 Psychrobacter urativorans 334543 203 0 Psychrobacter arcticus species 1 6 no rank 0 196806 938 1 species 0 Psychrobacter sp. PRwf-1 349106 160 species 1 94 1699624 Psychrobacter sp. P11G5 0 species 1 1028416 217 0 Psychrobacter sp. DAB_AL43B 105 1699622 Psychrobacter sp. P2G3 0 species 1 1 species Psychrobacter sp. G 0 182 571800 1720344 180 0 Psychrobacter sp. AntiMn-1 species 1 1 Acinetobacter 0 12843 469 65 25 genus species 1 487316 255 0 Acinetobacter soli 0 202950 174 1 species 1 strain Acinetobacter sp. ADP1 0 174 62977 0 Acinetobacter indicus 756892 461 1 species 1 species Acinetobacter johnsonii 0 214 40214 1 species Acinetobacter radioresistens 0 416 40216 Acinetobacter oleivorans 0 430 1148157 1 species 40215 503 0 Acinetobacter junii species 1 Acinetobacter larvae 0 186 1789224 1 species 5 species group 0 5944 909768 1 species 0 Acinetobacter baumannii 470 2174 species 1 457 106654 Acinetobacter nosocomialis 0 614 1785128 Acinetobacter lactucae 0 species 1 1 species Acinetobacter calcoaceticus 0 851 471 48296 1848 0 Acinetobacter pittii species 1 0 Acinetobacter equi 1324350 592 1 species 426 108981 Acinetobacter schindleri 0 species 1 7 no rank 0 2407 196816 500 1407071 Acinetobacter sp. TGL-Y2 0 species 1 Acinetobacter sp. ACNIH2 0 348 1758189 1 species Acinetobacter sp. TTH0-4 0 328 1646498 1 species species 1 1608473 351 0 Acinetobacter sp. NCu2D-2 1 species Acinetobacter sp. ACNIH1 0 249 1636603 species 1 2079596 147 0 Acinetobacter sp. SWBY1 species 1 484 1808001 Acinetobacter sp. LoGeW2-3 0 1 species 0 Acinetobacter haemolyticus 29430 385 1 species 0 Acinetobacter bereziniae 106648 385 1 1294 475 Moraxella 0 1 genus 5 435 34062 Moraxella osloensis 0 species 1 Moraxella bovoculi 0 399 386891 1 species 0 Moraxella ovis 29433 220 1 species Moraxella catarrhalis 0 239 480 1 species family 86 223 42985 135621 Pseudomonadaceae 0 1 286 41540 0 Pseudomonas 1 genus 80 1462 157783 387 0 Pseudomonas cremoricolorata species 1 0 136843 5876 9 species group 1 species 0 Pseudomonas fluorescens 294 3462 76758 147 0 Pseudomonas orientalis species 1 Pseudomonas poae 0 324 200451 1 species 1 species Pseudomonas azotoformans 0 347 47878 1 species 0 Pseudomonas trivialis 200450 447 263 75612 Pseudomonas mandelii 0 species 1 349 380021 Pseudomonas protegens 0 species 1 species 1 76761 210 0 Pseudomonas veronii 1 species 0 Pseudomonas corrugata 47879 327 208 1583341 Pseudomonas cerasi 0 species 1 2 species group 0 2693 136846 1 species 0 Pseudomonas balearica 74829 492 0 2201 578833 1 species subgroup 316 2201 0 Pseudomonas stutzeri species 1 0 Pseudomonas entomophila 312306 323 1 species Pseudomonas lurida 0 162 244566 1 species species 1 534 237610 Pseudomonas psychrotolerans 0 species 1 362 219572 Pseudomonas antarctica 0 288 101564 Pseudomonas alcaliphila 0 species 1 0 Pseudomonas versuta 1788301 370 1 species 0 Pseudomonas frederiksbergensis 104087 750 1 species 1 species 0 Pseudomonas knackmussii 65741 427 Pseudomonas brassicacearum 0 804 930166 1 species species 1 436 157782 Pseudomonas parafulva 0 0 4883 136841 6 species group 1 species Pseudomonas citronellolis 0 843 53408 0 1232139 398 1 species subgroup 1 species Pseudomonas furukawaii 0 398 1149133 0 Pseudomonas aeruginosa 287 1821 1 species Pseudomonas alcaligenes 0 354 43263 1 species Pseudomonas mendocina 0 1056 300 1 species 1 species Pseudomonas resinovorans 0 411 53412 2086 136842 0 species group 2 1550 587753 Pseudomonas chlororaphis 0 species 1 Pseudomonas fragi 0 536 296 1 species 527 1853130 Pseudomonas silesiensis 0 species 1 8 species group 0 3654 136849 1 species Pseudomonas avellanae 0 274 46257 Pseudomonas viridiflava 0 280 33069 1 species species 1 382 251701 Pseudomonas syringae group genomosp. 3 0 1 no rank 0 2775504 166 1206777 166 0 Pseudomonas sp. Lz4W species 1 1 species subgroup 0 1764 251695 1 species Pseudomonas syringae 0 1764 317 36746 184 0 Pseudomonas cichorii species 1 251698 604 0 species subgroup 2 Pseudomonas amygdali 0 288 47877 1 species 316 29438 Pseudomonas savastanoi 0 species 1 319 216142 Pseudomonas rhizosphaerae 0 species 1 species 1 196 237609 Pseudomonas alkylphenolica 0 196821 8198 0 no rank 30 Pseudomonas sp. UW4 0 201 1207075 1 species 1 species Pseudomonas sp. MYb193 0 311 1827300 species 1 183 1338689 Pseudomonas sp. JY-Q 0 species 1 347 2049589 Pseudomonas sp. HLS-6 0 1 species Pseudomonas sp. FDAARGOS_380 0 219 2018067 356 1500686 Pseudomonas sp. Os17 0 species 1 1 species Pseudomonas sp. M30-35 0 95 1981174 species 1 2069256 148 0 Pseudomonas sp. XWY-1 species 1 1930532 150 0 Pseudomonas sp. CC6-YY-74 0 Pseudomonas sp. S-6-2 1931241 244 1 species 202 69328 Pseudomonas sp. VLB120 0 species 1 301 1649877 Pseudomonas sp. CCOS 191 0 species 1 480 1294143 Pseudomonas sp. ATCC 13867 0 species 1 1 species 0 Pseudomonas sp. LH1G9 2083055 355 201 2083054 Pseudomonas sp. LG1D9 0 species 1 1 species 0 Pseudomonas sp. SWI44 2083053 180 1856685 226 0 Pseudomonas sp. TCU-HL1 species 1 255 1898684 Pseudomonas sp. LPH1 0 species 1 species 1 2083052 234 0 Pseudomonas sp. SWI36 1 species 0 Pseudomonas sp. StFLB209 1028989 406 species 1 343 1534110 Pseudomonas sp. DR 5-09 0 1611770 305 0 Pseudomonas sp. MRSN12121 species 1 species 1 194 2083051 Pseudomonas sp. SWI6 0 0 Pseudomonas sp. PONIH3 1636610 289 1 species species 1 363 1500687 Pseudomonas sp. St29 0 0 Pseudomonas sp. GR 6-02 1659194 336 1 species 1 species Pseudomonas sp. TKP 0 198 1415630 370 1283291 Pseudomonas sp. URMO17WK12:I11 0 species 1 Pseudomonas sp. NC02 0 274 2067572 1 species species 1 1259844 432 0 Pseudomonas sp. FGI182 species 1 198620 537 0 Pseudomonas koreensis 136845 6058 0 species group 6 1 species 0 Pseudomonas mosselii 78327 596 species 1 76759 858 0 Pseudomonas monteilii species 1 303 3512 0 Pseudomonas putida 47885 287 0 Pseudomonas oryzihabitans species 1 593 47880 Pseudomonas fulva 0 species 1 0 Pseudomonas plecoglossicida 70775 212 1 species 1 1849530 192 0 Oblitimonas 3 genus 2 0 Oblitimonas alkaliphila 1697053 189 1 species 3 subfamily 0 351 1030 11 genus 3 1 352 1030 0 Azotobacter 640 353 Azotobacter chroococcum 0 species 1 1 species Azotobacter vinelandii 0 379 354 0 Enterobacterales 91347 217447 1 239 order 368 22 family 26 1 1903409 10360 0 Erwiniaceae 2 genus 9 0 Tatumella 82986 439 1 Tatumella citrea 0 430 53336 1 species 0 2100764 652 2 genus 1 species Pantoea calida 0 299 665913 353 665914 Pantoea gaviniae 0 species 1 53335 4548 0 Pantoea 1 genus 11 165 627 553 Pantoea ananatis 0 species 1 0 Pantoea stewartii 66269 223 1 species species 1 723 470934 Pantoea vagans 0 1076550 255 0 Pantoea rwandensis species 1 Pantoea alhagi 0 563 1891675 1 species 0 2630326 1056 3 no rank species 1 437 592316 Pantoea sp. At-9b 0 1 species 0 Pantoea sp. PSNIH2 1484157 268 1484158 351 0 Pantoea sp. PSNIH1 species 1 species 1 197 1235990 Candidatus Pantoea carbekii 0 species group 1 739 1654067 0 0 Pantoea agglomerans 549 739 1 species 1 0 Erwinia 551 2614 55 8 genus 79967 371 0 Erwinia pyrifoliae species 1 species 1 552 318 0 Erwinia amylovora 1 species Erwinia billingiae 0 644 182337 0 Erwinia gerundensis 1619313 449 1 species 154 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae 0 species 1 1 no rank 0 418 2622719 Erwinia sp. Ejp617 0 418 215689 1 species 1 species 0 Erwinia tasmaniensis 338565 205 32199 1684 0 genus 1 Buchnera aphidicola 0 1684 9 1 species 1 genus 0 401 51228 species 1 401 51229 Wigglesworthia glossinidia 0 1 Enterobacteriaceae 0 168430 543 1260 114 family 3 genus 67 0 Raoultella 160674 4744 1 species 1 575 713 0 Raoultella planticola Raoultella ornithinolytica 0 3964 54291 1 species 0 62 401618 1 genus 62 401619 Candidatus Riesia pediculicola 0 species 1 genus 1 440 1335483 0 species 1 563 440 0 Shimwellia blattae 1330547 1597 0 Kosakonia 1 genus 5 18 species 1 283 208223 Kosakonia cowanii 0 0 Kosakonia sacchari 1158459 255 1 species Kosakonia oryzae 0 321 497725 1 species 1 species 0 Kosakonia radicincitans 283686 720 no rank 5 2615 36866 0 species 1 399 2066051 Enterobacteriaceae bacterium ENNIH1 0 0 Plautia stali symbiont 891974 287 1 species species 1 780 1920109 Enterobacteriaceae bacterium ENNIH2 0 Enterobacteriaceae bacterium ENNIH3 0 543 1920128 1 species 0 Enterobacteriaceae bacterium strain FGI 57 693444 606 1 species 181 409304 0 genus 1 species 1 181 168169 Candidatus Ishikawaella capsulata 0 0 1048757 26 1 genus 1 species Candidatus Moranella endobia 0 26 1048758 964 1330546 Pluralibacter 0 1 genus 3 2 61647 552 0 Pluralibacter gergoviae species 1 1 species 0 [Enterobacter] lignolyticus 1334193 410 genus 2 1 158483 1255 0 Cedecea 1 0 Cedecea neteri 158822 1254 1 species 1 genus 0 579 283 1 species 0 Kluyvera intermedia 61648 283 1 413496 2248 0 Cronobacter 85 genus 8 species 1 535744 357 0 Cronobacter universalis 1 species Cronobacter malonaticus 0 243 413503 1 species Cronobacter dublinensis 0 300 413497 1 species Cronobacter sakazakii 0 510 28141 species 1 212 1163710 Cronobacter condimenti 0 1 species 0 Cronobacter turicensis 413502 224 317 413501 Cronobacter muytjensii 0 species 1 13371 561 Escherichia 0 1 genus 5 45 0 Escherichia fergusonii 564 397 1 species 1 species 0 Escherichia albertii 208962 1282 1 species Escherichia marmotae 0 519 1499973 1 species 0 Escherichia coli 562 11128 0 1328 191675 16 no rank 84563 1328 0 clade 16 0 199891 71 1 clade 0 secondary endosymbiont of Trabutina mannipara 1835721 71 1 species 0 21 1906659 1 genus 0 Candidatus Hoaglandella endobia 1778263 21 1 species 84564 420 0 clade 7 1 0 Candidatus Blochmannia 203804 420 1 7 genus species 1 101534 60 0 Candidatus Blochmannia pennsylvanicus no rank 2 711328 172 0 87 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 species 1 85 1505597 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 0 species 1 203907 78 0 Candidatus Blochmannia floridanus species 1 0 Candidatus Blochmannia vafer 251535 75 1 species species 1 251542 34 0 Candidatus Blochmannia chromaiodes 1 genus 0 219 1906661 1 species Candidatus Gullanella endobia 0 219 1070130 1682492 121 0 genus 1 121 1410383 Candidatus Tachikawaea gelatinosa 0 species 1 0 319 146507 3 clade secondary endosymbiont of Heteropsylla cubana 0 63 134287 1 species species 1 148 1199245 secondary endosymbiont of Ctenarytaina eucalypti 0 genus 1 108 568987 0 Candidatus Hamiltonella defensa 0 108 138072 1 species 1906657 88 0 genus 1 1 species Candidatus Doolittlea endobia 0 88 1778262 69 1906660 0 genus 1 Candidatus Mikella endobia 0 69 1778264 1 species genus 4 3 1330545 1608 0 Lelliottia 1 Lelliottia nimipressuralis 0 236 69220 1 species 392 1907578 Lelliottia jeotgali 0 species 1 1 species Lelliottia amnigena 0 977 61646 923 22 genus 1 0 Enterobacter 547 15323 species group 12 11493 354276 0 0 Enterobacter cancerogenus 69218 235 1 species species 1 604 299767 Enterobacter ludwigii 0 1 Enterobacter hormaechei 0 2340 158836 1183 3 species 1 subspecies 0 Enterobacter xiangfangensis 1296536 504 1 subspecies Enterobacter cloacae complex 'Hoffmann cluster III' 0 653 1812934 3 no rank 0 1193 2757714 Enterobacter cloacae complex bacterium 0 322 2027919 1 species 281 1915310 Enterobacter cloacae complex sp. ECNIH7 0 species 1 species 1 590 2077137 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 species 1 550 5236 0 Enterobacter cloacae Enterobacter kobei 0 418 208224 1 species 1812935 300 0 Enterobacter cloacae complex 'Hoffmann cluster IV' species 1 1 species 0 Enterobacter asburiae 61645 1167 0 2608935 2907 9 no rank 1 species Enterobacter sp. ODB01 0 334 1827481 Enterobacter sp. R4-368 0 406 1166130 1 species 1692238 496 0 Enterobacter sp. FY-07 species 1 174 1868135 Enterobacter sp. HK169 0 species 1 1 species Enterobacter sp. 638 0 333 399742 0 Enterobacter sp. E20 1560339 105 1 species 0 Enterobacter sp. Crenshaw 1977566 147 1 species 1 species 0 Enterobacter sp. SA187 1914861 466 1 species 0 Enterobacter sp. CRENT-193 2051905 446 0 Salmonella 590 4159 1 3 genus 4 3874 28901 Salmonella enterica 0 species 1 0 Salmonella bongori 54736 281 1 species 76 genus 4 1 2265 620 Shigella 0 Shigella dysenteriae 0 784 622 1 species 0 2629414 855 1 no rank 1 species Shigella sp. PAMC 28760 0 855 1813821 species 1 550 623 Shigella flexneri 0 1081 10 genus 1 0 Klebsiella 570 98227 species 1 7941 244366 Klebsiella variicola 0 548 1428 0 Klebsiella aerogenes species 1 2 no rank 0 2608929 9675 Klebsiella sp. M5al 0 1888 1934254 1 species 1 species 0 Klebsiella sp. LTGPAF-6F 1905288 7787 0 Klebsiella quasivariicola 2026240 2630 1 species Klebsiella pneumoniae 0 26598 573 1 species 0 Klebsiella quasipneumoniae 1463165 8067 1 species 1 species Klebsiella michiganensis 0 8099 1134687 0 Klebsiella oxytoca 571 32708 1 species 746 14 genus 1 0 Citrobacter 544 15021 species 1 1451 35703 Citrobacter amalonaticus 0 677 67824 Citrobacter farmeri 0 species 1 species 1 545 384 0 Citrobacter koseri 1138 2644389 0 no rank 2 0 Citrobacter sp. FDAARGOS_156 1702170 465 1 species 673 1920110 Citrobacter sp. CFNIH10 0 species 1 species 1 308 67825 Citrobacter rodentium 0 7 species group 0 1344959 10317 2077147 574 0 Citrobacter freundii complex sp. CFNIH3 species 1 2066049 366 0 Citrobacter freundii complex sp. CFNIH2 species 1 species 1 671 2077149 Citrobacter freundii complex sp. CFNIH9 0 0 Citrobacter freundii 546 6706 1 species Citrobacter braakii 0 671 57706 1 species species 1 2077148 841 0 Citrobacter freundii complex sp. CFNIH4 488 67827 Citrobacter werkmanii 0 species 1 25 4 genus 1 0 Leclercia 83654 1453 no rank 2 990 2627398 0 species 1 504 1920114 Leclercia sp. LSNIH1 0 1 species 0 Leclercia sp. LSNIH3 1920116 486 83655 438 0 Leclercia adecarboxylata species 1 34 39 family 1 Yersiniaceae 0 19076 1903411 0 Serratia 613 10354 1 16 genus 1130 1 species 0 Serratia liquefaciens 614 557 species 1 2009 615 Serratia marcescens 0 82996 960 0 Serratia plymuthica species 1 61652 394 0 Serratia rubidaea species 1 1 species 0 Serratia proteamaculans 28151 587 species 1 966 47917 Serratia fonticola 0 species 1 61651 669 0 Serratia ficaria 2647522 3082 0 no rank 8 species 1 1758196 318 0 Serratia sp. SSNIH1 1 species Serratia sp. SCBI 0 414 488142 768490 246 0 Serratia sp. AS12 species 1 species 1 671990 562 0 Serratia sp. FGI94 species 1 104623 583 0 Serratia sp. ATCC 39006 0 Serratia sp. AS13 768493 246 1 species 2033438 373 0 Serratia sp. MYb239 species 1 1327989 340 0 Serratia sp. FS14 species 1 2 genus 5 Chania 0 408 1745211 1 Chania multitudinisentens 0 403 1639108 1 species 1 929812 486 0 Gibbsiella 1 genus 2 929813 485 0 Gibbsiella quercinecans species 1 genus 13 86 629 6205 0 Yersinia 1 0 2653513 176 1 no rank 0 Yersinia sp. FDAARGOS_228 1839800 176 1 species species 1 29484 1541 0 Yersinia frederiksenii 29486 431 0 Yersinia ruckeri species 1 1 species Yersinia aleksiciae 0 204 263819 1 species 0 Yersinia intermedia 631 177 1176 1649845 0 species group 3 1 species 0 Yersinia pseudotuberculosis 633 632 1 species 0 Yersinia pestis 632 302 1 species Yersinia similis 0 242 367190 Yersinia rohdei 0 413 29485 1 species 630 1307 0 Yersinia enterocolitica species 1 species 1 28152 368 0 Yersinia kristensenii 29483 326 0 Yersinia aldovae species 1 1 genus 0 Rouxiella 1565532 7 44 genus 4 1 1582 34037 Rahnella 0 1 species 0 Rahnella aquatilis 34038 584 2 no rank 0 954 2635087 0 Rouxiella sp. ERMR1:05 1805933 412 1 species 542 741091 Rahnella sp. Y9602 0 species 1 451511 618 0 no rank 2 702 618 0 Plesiomonas 1 genus 2 14 Plesiomonas shigelloides 0 604 703 1 species family 14 2 4304 1903412 Hafniaceae 0 1 genus 8 156 635 2691 0 Edwardsiella 1 1 species Edwardsiella hoshinae 0 439 93378 species 1 235 1263550 Edwardsiella piscicida 0 1821960 308 0 Edwardsiella anguillarum species 1 2 no rank 0 2676541 754 1 species 0 Edwardsiella sp. LADL05-105 1650654 299 0 Edwardsiella sp. EA181011 1578828 455 1 species 67780 174 0 Edwardsiella ictaluri species 1 625 636 Edwardsiella tarda 0 species 1 Hafnia 0 1313 568 1 3 genus 445 1 species 0 Hafnia alvei 569 694 174 2621980 0 no rank 1 0 Hafnia sp. CBA7124 1848580 174 1 species 0 Obesumbacterium 82982 298 1 2 genus 30 species 1 268 82983 Obesumbacterium proteus 0 2 family 0 1903416 245 245 82984 Pragia 0 1 genus 2 4 82985 241 0 Pragia fontium species 1 32 21 family 1 Morganellaceae 0 7067 1903414 29487 1424 0 Photorhabdus 1 genus 4 7 Photorhabdus luminescens 0 434 29488 1 species 1 species Photorhabdus asymbiotica 0 521 291112 1 species 0 Photorhabdus temperata 574560 462 15 6 genus 1 Xenorhabdus 0 1934 626 Xenorhabdus nematophila 0 468 628 1 species species 1 487 40576 Xenorhabdus bovienii 0 1 species 0 Xenorhabdus doucetiae 351671 408 Xenorhabdus hominickii 0 229 351679 1 species species 1 327 40577 Xenorhabdus poinarii 0 19 genus 3 1 583 1276 0 Proteus 1 species Proteus mirabilis 0 780 584 0 Proteus vulgaris 585 477 1 species 0 637 81 1 genus species 1 81 634113 Arsenophonus symbiont of Lipoptena fortisetosa 0 1005 581 Morganella 0 1 genus 2 8 Morganella morganii 0 997 582 1 species 2 genus 4 1 1315 586 Providencia 0 476 588 Providencia stuartii 0 species 1 species 1 300 126385 Providencia alcalifaciens 0 species 1 587 537 0 Providencia rettgeri family 20 8 1903410 6979 0 Pectobacteriaceae 1 2 genus 23 0 Brenneria 71655 359 1 Brenneria goodwinii 0 336 1109412 1 species 0 Pectobacterium 122277 3039 1 6 genus 101 1 species 0 Pectobacterium wasabiae 55208 290 species 1 29471 287 0 Pectobacterium atrosepticum 554 1285 0 Pectobacterium carotovorum species 1 1 species Pectobacterium polaris 0 540 2042057 1 species 0 Pectobacterium parmentieri 1905730 536 83 genus 6 1 204037 2660 0 Dickeya species 1 607 204042 Dickeya zeae 0 204038 333 0 Dickeya dadantii species 1 Dickeya fangzhongdai 0 509 1778540 1 species Dickeya dianthicola 0 376 204039 1 species 0 Dickeya solani 1089444 752 1 species genus 5 12 913 84565 Sodalis 0 1 335 1486991 Candidatus Sodalis pierantonius 0 species 1 1239307 323 0 Sodalis praecaptivus species 1 1 species 0 Sodalis endosymbiont of Henestaris halophilus 1929246 85 0 Sodalis glossinidius 63612 158 1 species order 31 10 18516 135625 Pasteurellales 0 1 30 family 73 0 Pasteurellaceae 712 18506 1 2 3 genus 1 Pasteurella 0 1252 745 Pasteurella dagmatis 0 374 754 1 species Pasteurella multocida 0 876 747 1 species 2 genus 2 0 Histophilus 214906 688 1 731 686 0 Histophilus somni species 1 genus 4 6 1863 75984 Mannheimia 0 1 1 species Mannheimia varigena 0 909 85404 0 379 2645054 1 no rank Mannheimia sp. USDA-ARS-USMARC-1261 0 379 1432056 1 species Mannheimia haemolytica 0 569 75985 1 species 1 2094023 946 0 Glaesserella 1 genus 2 1 species 0 Glaesserella parasuis 738 945 genus 6 11 724 9362 0 Haemophilus 1 1 species Haemophilus influenzae 0 1883 727 583 730 [Haemophilus] ducreyi 0 species 1 no rank 1 2609962 402 0 1 species Haemophilus sp. oral taxon 036 0 402 712310 1 species 0 Haemophilus pittmaniae 249188 864 1 species 0 Haemophilus parainfluenzae 729 5619 1 genus 0 536 155493 536 750 Gallibacterium anatis 0 species 1 genus 5 1 713 1486 0 Actinobacillus 1 1 species 0 Actinobacillus suis 716 428 1 species Actinobacillus succinogenes 0 271 67854 1 species Actinobacillus pleuropneumoniae 0 410 715 376 718 Actinobacillus equuli 0 species 1 2 genus 2 0 Bibersteinia 476528 404 1 Bibersteinia trehalosi 0 402 47735 1 species 697331 761 0 genus 1 157673 761 0 [Mannheimia] succiniciproducens species 1 0 Aggregatibacter 416916 1135 1 3 genus 1 species 1 714 615 0 Aggregatibacter actinomycetemcomitans 732 519 0 Aggregatibacter aphrophilus species 1 0 Nevskiales 1775403 139 1 3 order 1 1 family Sinobacteraceae 0 2 568386 0 2689614 136 1 family 0 136 469322 1 genus 0 Steroidobacter denitrificans 465721 136 1 species order 4 8 340 1934945 Immundisolibacterales 0 1 1934946 332 0 Immundisolibacteraceae 1 family 3 27 Immundisolibacter 0 305 1934947 1 2 genus 5 300 1810504 Immundisolibacter cernigliae 0 species 1 3 12 order 1 0 Methylococcales 135618 2304 1 2301 403 Methylococcaceae 0 9 family 11 1 Methylomicrobium 0 261 39773 1 2 genus species 1 271065 260 0 Methylomicrobium alcaliphilum 471 762296 Methylovulum 0 1 genus 2 2 species 1 469 1704499 Methylovulum psychrotolerans 0 genus 1 413 381 0 381 414 Methylococcus capsulatus 0 species 1 8 5 genus 1 Methylomonas 0 1179 416 702114 189 0 Methylomonas koyamae species 1 1 species Methylomonas denitrificans 0 401 1538553 0 322 2608980 1 no rank species 1 1727196 322 0 Methylomonas sp. DH-1 0 Methylomonas methanica 421 259 1 species 1 Vibrionales 0 20872 135623 4 43 order 52 42 family 1 Vibrionaceae 0 20868 641 1 0 Photobacterium 657 1917 5 4 genus species 1 38293 817 0 Photobacterium damselae species 1 1295392 499 0 Photobacterium gaetbulicola 1 species 0 Photobacterium profundum 74109 596 2042066 596 0 genus 1 596 1755811 Paraphotobacterium marinum 0 species 1 9 genus 4 1 511678 1721 0 Aliivibrio species 1 547 40269 Aliivibrio salmonicida 0 1 species 0 Aliivibrio wodanis 80852 655 Aliivibrio fischeri 0 510 668 1 species 156 genus 30 1 16300 662 Vibrio 0 1 species Vibrio gazogenes 0 335 687 710 2614977 0 no rank 2 1 species 0 Vibrio sp. 2521-89 2014742 269 species 1 441 1116375 Vibrio sp. EJY3 0 1 species 0 Vibrio mimicus 674 904 180 1534743 Vibrio hyugaensis 0 species 1 45658 276 0 Vibrio scophthalmi species 1 species 1 55601 354 0 Vibrio anguillarum 7319 717610 0 species group 10 1 species Vibrio rotiferianus 0 231 190895 species 1 261 766224 Vibrio jasicida 0 0 Vibrio harveyi 669 698 1 species 1587 670 Vibrio parahaemolyticus 0 species 1 680 1042 0 Vibrio campbellii species 1 species subgroup 2 678 2315253 0 species 1 150340 218 0 Vibrio antiquarius 1 species Vibrio diabolicus 0 460 50719 species 1 696485 730 0 Vibrio owensii 878 663 Vibrio alginolyticus 0 species 1 1214 691 Vibrio natriegens 0 species 1 1 species Vibrio vulnificus 0 1229 672 0 Vibrio tasmaniensis 212663 392 1 species species 1 443 28173 Vibrio nigripulchritudo 0 species group 1 184 1891919 0 species 1 29498 184 0 Vibrio tubiashii 190893 957 0 Vibrio coralliilyticus species 1 666 680 0 Vibrio cholerae species 1 Vibrio qinghaiensis 0 290 2025808 1 species Vibrio tritonius 0 267 1435069 1 species species 1 235 553239 Vibrio breoganii 0 species 1 227 52443 Vibrio tapetis 0 242 29494 Vibrio furnissii 0 species 1 676 920 0 Vibrio fluvialis species 1 2 2 genus 1 Grimontia 0 282 246861 Grimontia hollisae 0 280 673 1 species 188 subphylum 0 66585 68525 120 class 68 0 Deltaproteobacteria 28221 37579 1 104 order 24 1 69541 8230 0 Desulfuromonadales 213421 2830 0 Desulfuromonadaceae 1 family 9 39 1740 18 Pelobacter 0 1 genus 5 8 2620299 487 0 no rank 1 1 species Pelobacter sp. SFB93 0 487 1842532 1 species 0 Pelobacter carbinolicus 19 299 species 1 29543 500 0 Pelobacter propionicus 29542 446 0 Pelobacter acetylenicus species 1 0 Desulfuromonas 890 1051 1 3 genus 8 1 species 0 Desulfuromonas soudanensis 1603606 422 1 no rank 0 621 2614637 1 species 0 Desulfuromonas sp. DDH964 1823759 621 27 family 14 1 5296 213422 Geobacteraceae 0 79 11 genus 1 0 Geobacter 28231 4871 1 species 0 Geobacter uraniireducens 351604 393 2 no rank 0 1157 2627627 0 Geobacter sp. M18 443143 594 1 species 563 443144 Geobacter sp. M21 0 species 1 1 species Geobacter metallireducens 0 312 28232 species 1 225194 439 0 Geobacter bemidjiensis 1 species 0 Geobacter anodireducens 1340425 410 375 345632 Geobacter pickeringii 0 species 1 0 Geobacter sulfurreducens 35554 395 1 species species 1 1203471 340 0 Geobacter daltonii species 1 971 313985 Geobacter lovleyi 0 392332 398 0 Geoalkalibacter 1 genus 2 2 species 1 483547 396 0 Geoalkalibacter subterraneus 1 213115 11661 0 Desulfovibrionales 107 order 25 14 4 family 1 0 Desulfomicrobiaceae 213116 833 898 819 0 Desulfomicrobium 1 genus 3 3 1 species Desulfomicrobium orale 0 392 132132 species 1 424 899 Desulfomicrobium baculatum 0 3 family 1 Desulfohalobiaceae 0 181 213117 1 1 180 45662 Desulfohalobium 0 1 genus 2 species 1 45663 179 0 Desulfohalobium retbaense family 17 48 10540 194924 Desulfovibrionaceae 0 1 2035811 1501 0 Pseudodesulfovibrio 1 genus 4 105 species 1 57320 354 0 Pseudodesulfovibrio profundus 0 Pseudodesulfovibrio aespoeensis 182210 447 1 species Pseudodesulfovibrio indicus 0 595 1716143 1 species 41707 297 0 genus 1 Lawsonia intracellularis 0 297 29546 1 species 1 Desulfovibrio 0 7629 872 28 9 genus 0 2593640 324 1 no rank Desulfovibrio sp. G11 0 324 631220 1 species species 1 1725232 178 0 Candidatus Desulfovibrio trichonymphae 1 species Desulfovibrio magneticus 0 546 184917 1 species 0 Desulfovibrio piger 901 3081 species 1 1300 881 Desulfovibrio vulgaris 0 species 1 884 876 Desulfovibrio desulfuricans 0 58180 616 0 Desulfovibrio alaskensis species 1 species 1 672 44742 Desulfovibrio fairfieldensis 0 1 genus 0 2794998 599 599 880 Desulfovibrio salexigens 0 species 1 2582840 466 0 genus 1 1 species 0 Desulfovibrio africanus 873 466 9 order 4 Syntrophobacterales 0 1005 213462 1 1 773 213468 Syntrophaceae 0 7 family 6 0 60892 192 1 genus 60893 192 0 Desulfobacca acetoxidans species 1 1 Desulfomonile 0 182 2357 1 2 genus species 1 181 2358 Desulfomonile tiedjei 0 1 2 genus 1 0 Syntrophus 43773 392 Syntrophus aciditrophicus 0 391 316277 1 species 1 228 213465 Syntrophobacteraceae 0 1 family 2 0 29526 227 1 genus species 1 119484 227 0 Syntrophobacter fumaroxidans 0 Desulfarculales 453227 492 1 4 order 2 Desulfarculaceae 0 490 453228 1 3 family 10 1 453229 480 0 Desulfarculus 3 genus 2 Desulfarculus baarsii 0 477 453230 1 species 18 16 order 1 0 Desulfobacterales 213118 3905 0 Desulfobacteraceae 213119 1960 1 7 family 5 1 Desulfococcus 0 737 896 9 3 genus 1 species 0 Desulfococcus oleovorans 181663 519 0 Desulfococcus multivorans 897 209 1 species 218207 234 0 genus 1 1 species Desulfatibacillum alkenivorans 0 234 259354 genus 1 646 28222 0 Desulfobacula toluolica 0 646 28223 1 species 338 2295 0 genus 1 1 species 0 Desulfobacterium autotrophicum 2296 338 Desulfobulbaceae 0 1927 213121 1 8 family 11 1 544 109168 Desulfotalea 0 6 genus 2 84980 538 0 Desulfotalea psychrophila species 1 genus 1 264 427922 0 0 Desulfurivibrio alkaliphilus 427923 264 1 species 1 genus 2 1 53318 361 0 Desulfocapsa 360 65555 Desulfocapsa sulfexigens 0 species 1 genus 2 72 893 747 0 Desulfobulbus 1 Desulfobulbus sp. ORNL 0 675 1986146 1 species 1 29 11441 0 Myxococcales 163 order 37 634 224462 0 suborder 3 1 634 224464 Kofleriaceae 0 9 family 3 1 Haliangium 0 625 162027 1 2 genus 1 species Haliangium ochraceum 0 624 80816 8 suborder 0 80812 1824 3 family 5 1 1589 49 Polyangiaceae 0 1 348 50 Chondromyces 0 1 genus 2 1 species 0 Chondromyces crocatus 52 347 16 genus 2 1 1238 39643 Sorangium 0 Sorangium cellulosum 0 1222 56 1 species 4 3 family 1 0 Sandaracinaceae 1055686 235 1 Sandaracinus 0 231 1055688 2 2 genus 1 species Sandaracinus amylolyticus 0 229 927083 8820 80811 0 suborder 25 9 5 family 1 0 Anaeromyxobacteraceae 1524215 1674 0 Anaeromyxobacter 161492 1665 1 4 genus 54 2 no rank 0 2620896 754 1 species 0 Anaeromyxobacter sp. K 447217 483 species 1 271 404589 Anaeromyxobacter sp. Fw109-5 0 species 1 857 161493 Anaeromyxobacter dehalogenans 0 1 289 1524213 Vulgatibacteraceae 0 3 family 3 1524214 286 0 Vulgatibacter 1 genus 2 1 0 Vulgatibacter incomptus 1391653 285 1 species 1 0 Archangiaceae 39 2469 24 8 family 1 0 Melittangium 44 580 2 2 genus 1 species 0 Melittangium boletus 83453 578 genus 2 19 631 40 Stigmatella 0 1 0 Stigmatella aurantiaca 41 612 1 species 42 603 0 genus 1 Cystobacter fuscus 0 603 43 1 species 1 genus 2 1 631 47 Archangium 0 0 Archangium gephyra 48 630 1 species 9 family 12 Myxococcaceae 0 4388 31 1 1 Myxococcus 0 3030 32 173 5 genus 664 34 Myxococcus xanthus 0 species 1 Myxococcus fulvus 0 1028 33 1 species species 1 630 1297742 Myxococcus hansupus 0 1 species Myxococcus stipitatus 0 535 83455 29 3 genus 1 0 Corallococcus 83461 1346 Corallococcus coralloides 0 683 184914 1 species species 1 634 35 Myxococcus macrosporus 0 1 4 order 1 Desulfurellales 0 777 213113 3 family 1 0 Desulfurellaceae 117942 776 1 33001 532 0 genus 1 species 1 532 33002 Desulfurella acetivorans 0 1 genus 0 84404 243 species 1 243 84405 Hippea maritima 0 29006 29547 Epsilonproteobacteria 0 1 class 68 66 1 213849 28148 0 Campylobacterales 262 order 64 family 14 2 72293 3223 0 Helicobacteraceae 1 5 genus 12 1 209 3055 0 Helicobacter 1 species Helicobacter pylori 0 1119 210 0 Helicobacter mustelae 217 151 1 species species 1 606 138563 Helicobacter cetorum 0 1 no rank 0 158 2593540 species 1 222136 158 0 Helicobacter sp. MIT 01-6242 species 1 214 109 0 Helicobacter felis 1 species 0 Helicobacter hepaticus 32025 118 1591088 168 0 Helicobacter himalayensis species 1 species 1 76936 180 0 Helicobacter typhlonius 0 Helicobacter cinaedi 213 110 1 species species 1 212 173 0 Helicobacter acinonychis Helicobacter bilis 0 158 37372 1 species genus 1 843 166 0 species 1 844 166 0 Wolinella succinogenes family 4 1042 2771472 0 genus 3 1 727 265570 Sulfurovum 0 1 no rank 1 281 2646778 0 387093 281 0 Sulfurovum sp. NBC37-1 species 1 Sulfurovum lithotrophicum 0 445 206403 1 species 269260 315 0 genus 1 1 species Nitratifractor salsuginis 0 315 269261 72294 22802 0 Campylobacteraceae 1 family 41 1343 genus 26 367 194 15705 0 Campylobacter 1 1372 2593542 0 no rank 4 Campylobacter sp. RM16704 0 373 1500960 1 species 1 species 0 Campylobacter sp. RM6137 1660073 358 species 1 1660076 326 0 Campylobacter sp. RM12175 1 species Campylobacter sp. RM8964 0 315 1660074 Campylobacter volucris 0 253 1031542 1 species 197 2250 0 Campylobacter jejuni species 1 species 1 260714 420 0 Campylobacter insulaenigrae species 1 76517 153 0 Campylobacter hominis 1 species Campylobacter concisus 0 469 199 1 species 0 Campylobacter subantarcticus 497724 398 140 200 Campylobacter curvus 0 species 1 0 Campylobacter iguaniorum 1244531 210 1 species 128 824 Campylobacter gracilis 0 species 1 1 species Campylobacter lanienae 0 592 75658 0 Campylobacter helveticus 28898 99 1 species species 1 3787 195 Campylobacter coli 0 0 Campylobacter pinnipediorum 1965231 874 1 species 1 species 0 Campylobacter avium 522485 96 Campylobacter lari 0 1113 201 1 species Campylobacter fetus 0 687 196 1 species 1 species 0 Campylobacter hyointestinalis 198 378 species 1 827 435 0 Campylobacter ureolyticus 609 206 Campylobacter sputorum 0 species 1 408 374106 Campylobacter cuniculorum 0 species 1 1 species 0 Campylobacter peloridis 488546 467 0 2321108 3794 5 no rank 3 genus 13 0 Arcobacter 28196 2056 1 28197 1106 0 Arcobacter butzleri species 1 1 species Arcobacter nitrofigilis 0 937 28199 0 818 2321187 1 genus 1 species Arcobacter sp. LPB0137 0 818 1850254 920 2321207 0 no rank 1 species 1 920 944547 Arcobacter sp. L 0 11 9 genus 1 Sulfurospirillum 0 1960 57665 Sulfurospirillum cavolei 0 144 366522 1 species 65553 261 0 Sulfurospirillum deleyianum species 1 1 species Sulfurospirillum multivorans 0 166 66821 173 194424 Sulfurospirillum halorespirans 0 species 1 species 1 44674 206 0 Sulfurospirillum barnesii no rank 3 2618290 999 0 1 species 0 Sulfurospirillum sp. SL2-1 1986224 283 220622 334 0 Sulfurospirillum sp. JPD-1 species 1 species 1 382 1581011 Sulfurospirillum sp. UCH001 0 0 819 2771471 4 family 0 286130 279 1 genus 279 148813 Sulfuricurvum kujiense 0 species 1 3 genus 2 Sulfurimonas 0 540 202746 1 1 species Sulfurimonas denitrificans 0 267 39766 species 1 271 202747 Sulfurimonas autotrophica 0 0 235899 792 3 order family 1 2795691 352 0 0 352 269258 1 genus 0 352 2624044 1 no rank 1 species Nitratiruptor sp. SB155-2 0 352 387092 family 2 224467 440 0 Nautilia 0 440 191291 1 2 genus 3 437 244787 Nautilia profundicola 0 species 1 1 28211 118638 0 Alphaproteobacteria 352 class 526 1 Magnetococcales 0 187 1191478 2 4 order 6 3 family 1 0 Magnetococcaceae 1191479 185 162171 179 0 Magnetococcus 1 genus 2 1 species 1 178 1124597 Magnetococcus marinus 0 no rank 7 1437 82117 0 62654 266 0 clade 2 Candidatus Puniceispirillum 0 266 767891 1 2 genus 1 1 species 0 Candidatus Puniceispirillum marinum 767892 265 2 genus 1 Polymorphum 0 279 991903 1 991904 278 0 Polymorphum gilvum species 1 0 213485 560 1 genus species 1 560 349221 Micavibrio aeruginosavorus 0 genus 2 5 1632780 332 0 Phreatobacter 1 327 1868589 Phreatobacter sp. S-12 0 species 1 19 order 19 Caulobacterales 0 4042 204458 1 1 4023 76892 Caulobacteraceae 0 46 family 18 1 1497 41275 Brevundimonas 0 23 genus 7 0 2622653 650 3 no rank 0 Brevundimonas sp. LM2 1938605 126 1 species 1 species 0 Brevundimonas sp. DS20 1532555 302 species 1 222 1827469 Brevundimonas sp. GW460-12-10-14-LB2 0 1 species Brevundimonas vesicularis 0 396 41276 species 1 588932 175 0 Brevundimonas naejangsanensis 253 74313 Brevundimonas subvibrioides 0 species 1 75 1830 0 Caulobacter 1 genus 6 28 0 Caulobacter mirabilis 69666 408 1 species 69395 203 0 Caulobacter henricii species 1 2648921 365 0 no rank 1 Caulobacter sp. K31 0 365 366602 1 species Caulobacter vibrioides 0 603 155892 1 species species 1 223 88688 Caulobacter segnis 0 242 20 0 genus 1 284016 242 0 Phenylobacterium zucineum species 1 0 81440 110 1 no rank 1759059 110 0 Caulobacteraceae bacterium OTSz_A_272 species 1 1 0 Asticcacaulis 76890 298 8 2 genus 0 Asticcacaulis excentricus 78587 290 1 species 1 3 order 1 0 Parvularculales 255473 59 2 family 2 1 58 255474 Parvularculaceae 0 genus 1 208215 56 0 208216 56 0 Parvularcula bermudensis species 1 356 48818 0 Rhizobiales 1 order 204 455 family 3 45404 354 0 0 159 532 1 genus 0 Beijerinckia indica 533 159 1 species 5 genus 2 1 120652 195 0 Methylocella 0 Methylocella silvestris 199596 190 1 species 1 Methylobacteriaceae 0 4821 119045 51 15 family 2 genus 5 Microvirga 0 463 186650 1 458 1882682 Microvirga ossetica 0 species 1 Methylobacterium 0 2717 407 1 9 genus 152 1 species 0 Methylobacterium aquaticum 270351 457 0 937 2615210 3 no rank 1 species 0 Methylobacterium sp. 4-46 426117 272 1 species Methylobacterium sp. AMS5 0 352 925818 1479019 313 0 Methylobacterium sp. C1 species 1 31998 383 0 Methylobacterium radiotolerans species 1 114616 281 0 Methylobacterium nodulans species 1 Methylobacterium phyllosphaerae 0 255 418223 1 species species 1 252 334852 Methylobacterium oryzae 0 3 genus 0 1590 2282523 0 Methylobacterium populi 223967 465 1 species species 1 202 29429 Methylobacterium zatmanii 0 species 1 408 923 0 Methylobacterium extorquens 189 53 family 1 Rhizobiaceae 0 16666 82115 0 Shinella 323620 397 1 2 genus 13 no rank 1 2643062 384 0 1 species Shinella sp. HZN7 0 384 879274 0 227290 11948 34 no rank 34 genus 7 1 357 3239 0 Agrobacterium 1 species Agrobacterium vitis 0 331 373 0 1183400 1857 2 species group species 1 1176649 271 0 Agrobacterium fabrum 1 species 0 Agrobacterium tumefaciens 358 1586 624 2632611 0 no rank 2 Agrobacterium sp. RAC06 0 318 1842536 1 species 306 861208 Agrobacterium sp. H13-3 0 species 1 393 359 Agrobacterium rhizogenes 0 species 1 2 genus 2 1 645 1525371 Neorhizobium 0 species 1 643 399 Neorhizobium galegae 0 0 Rhizobium 379 8064 1 25 genus 472 29449 860 0 Rhizobium etli species 1 1 species 0 Rhizobium tropici 398 381 585 56730 Rhizobium gallicum 0 species 1 3533 2613769 0 no rank 19 Rhizobium sp. N731 0 44 1703966 1 species species 1 1703965 11 0 Rhizobium sp. N6212 1 species 0 Rhizobium sp. N1341 1703962 1 species 1 81 2020313 Rhizobium sp. TAL182 0 350 1914541 Rhizobium sp. Y9 0 species 1 Rhizobium sp. NXC24 0 332 2048897 1 species species 1 172 2020311 Rhizobium sp. Kim5 0 1 species Rhizobium sp. N1314 0 44 1703961 species 1 263 1869170 Rhizobium sp. S41 0 364 1571470 Rhizobium sp. ACO-34A 0 species 1 species 1 358 1703969 Rhizobium sp. N324 0 species 1 1125847 263 0 Rhizobium sp. NT-26 1 species Rhizobium sp. N741 0 1 1703967 424182 297 0 Rhizobium sp. IRBG74 species 1 0 Rhizobium sp. N621 1703964 11 1 species species 1 2028343 228 0 Rhizobium sp. 10195 259 1981173 Rhizobium sp. NXC14 0 species 1 species 1 195 2020312 Rhizobium sp. CIAT894 0 259 1301032 Rhizobium sp. IE4771 0 species 1 1 species Rhizobium phaseoli 0 528 396 1 species 0 Rhizobium leguminosarum 384 1705 10 no rank 0 227292 3343 5 genus 3 1 106591 665 0 Ensifer 0 Ensifer sojae 716925 315 1 species species 1 106592 345 0 Ensifer adhaerens 7 genus 66 0 Sinorhizobium 28105 2678 1 Sinorhizobium meliloti 0 813 382 1 species 2613772 555 0 no rank 2 139 794846 Sinorhizobium sp. CCBAU 05631 0 species 1 1 species Sinorhizobium sp. RAC02 0 416 1842534 333 194963 Sinorhizobium americanum 0 species 1 0 557 663276 1 species group species 1 557 380 Sinorhizobium fredii 0 Sinorhizobium medicae 0 354 110321 1 species 2 genus 6 1 34019 789 0 Liberibacter 0 Liberibacter crescens 1273132 215 1 species species 1 34020 271 0 Candidatus Liberibacter africanus 556287 77 0 Candidatus Liberibacter solanacearum species 1 145 309868 Candidatus Liberibacter americanus 0 species 1 species 1 34021 79 0 Candidatus Liberibacter asiaticus family 25 85 8230 41294 Bradyrhizobiaceae 0 1 2 genus 3 1 911 358 0 Nitrobacter 1 species 0 Nitrobacter hamburgensis 912 284 species 1 913 72 0 Nitrobacter winogradskyi genus 11 115 374 3810 0 Bradyrhizobium 1 species 1 1274631 364 0 Bradyrhizobium icense species 1 44255 341 0 Bradyrhizobium oligotrophicum 375 573 0 Bradyrhizobium japonicum species 1 species 1 1355477 566 0 Bradyrhizobium diazoefficiens 1851 2631580 0 no rank 6 1 species 0 Bradyrhizobium sp. BTAi1 288000 313 species 1 2057741 319 0 Bradyrhizobium sp. SK17 1 species Bradyrhizobium sp. 0 405 376 species 1 115808 318 0 Bradyrhizobium sp. ORS 285 species 1 223 114615 Bradyrhizobium sp. ORS 278 0 1223566 273 0 Bradyrhizobium sp. CCGE-LA001 species 1 5 genus 2 1 1649510 232 0 Variibacter Variibacter gotjawalensis 0 227 1333996 1 species 1306 85413 Bosea 0 1 genus 5 16 1526658 371 0 Bosea vaviloviae species 1 919 2653178 0 no rank 3 1 species Bosea sp. AS-1 0 377 2015316 0 Bosea sp. RAC05 1842539 331 1 species 1792307 211 0 Bosea sp. PAMC 26642 species 1 1 genus 0 40136 150 1 species 0 Oligotropha carboxidovorans 40137 150 1 Rhodopseudomonas 0 2289 1073 35 2 genus species 1 2254 1076 Rhodopseudomonas palustris 0 17 19 family 1 Phyllobacteriaceae 0 4074 69277 1 245876 135 0 Nitratireductor 12 genus 2 0 Nitratireductor basaltis 472175 123 1 species 1 237 274591 Hoeflea 0 1 genus 2 1 no rank 0 236 2614931 species 1 236 1620421 Hoeflea sp. IMCC20628 0 372 31988 Aminobacter 0 1 genus 2 2 Aminobacter aminovorans 0 370 83263 1 species Mesorhizobium 0 2817 68287 1 9 genus 65 434 39645 Mesorhizobium ciceri 0 species 1 species 1 286 381 Mesorhizobium loti 0 species 1 1670800 269 0 Mesorhizobium sp. B7 325217 503 0 no rank 1 Mesorhizobium sp. WSM1497 0 503 278153 1 species species 1 337 71433 Mesorhizobium amorphae 0 1 species 0 Mesorhizobium opportunistum 593909 329 0 Mesorhizobium australicum 536018 262 1 species 2066070 332 0 Mesorhizobium japonicum species 1 1 genus 0 28100 276 species 1 276 1867719 Phyllobacterium zundukense 0 1 2 genus 1 Chelativorans 0 220 449972 no rank 1 219 2643807 0 species 1 266779 219 0 Chelativorans sp. BNC1 2 2 family 1 Rhodobiaceae 0 144 119043 142 256616 0 genus 1 species 1 256618 142 0 Parvibaculum lavamentivorans 20 family 8 Brucellaceae 0 2449 118882 1 286 14 genus 1 0 Brucella 234 1071 1 species 0 Brucella ceti 120577 47 1 species 0 Brucella pinnipedialis 120576 44 0 Brucella canis 36855 43 1 species 1 species 0 Brucella microti 444163 10 10 29461 Brucella suis 0 species 1 112 29459 Brucella melitensis 0 species 1 species 1 981386 98 0 Brucella vulpis 398 2632610 0 no rank 4 Brucella sp. 09RB8471 0 66 1149952 1 species 0 Brucella sp. 09RB8910 1844051 39 1 species 1 species 0 Brucella sp. 2002734562 1891098 10 1 species Brucella sp. 141012304 0 283 1885919 236 6 0 Brucella ovis species 1 species 1 235 17 0 Brucella abortus genus 5 21 1370 528 Ochrobactrum 0 1 species 1 309 529 Ochrobactrum anthropi 0 571256 385 0 Ochrobactrum pituitosum species 1 419475 234 0 Ochrobactrum pseudogrignonense species 1 species 1 421 271865 Ochrobactrum sp. A44 0 10 4 family 1 Chelatococcaceae 0 762 2036754 genus 3 22 28209 752 0 Chelatococcus 1 species 1 281 444444 Chelatococcus daeguensis 0 0 449 2638111 1 no rank 1702325 449 0 Chelatococcus sp. CO-6 species 1 119042 636 0 no rank 5 231 1572860 Hartmannibacter 0 1 genus 2 1 1 species 0 Hartmannibacter diazotrophicus 1482074 230 Pseudorhodoplanes 0 210 1734920 1 2 genus 2 0 Pseudorhodoplanes sinuspersici 1235591 208 1 species 195 1484898 0 genus 1 195 1384459 Methyloceanibacter caenitepidi 0 species 1 Aurantimonadaceae 0 1419 255475 1 7 family 5 Aureimonas 0 325 414371 1 2 genus 1 0 2615206 324 1 no rank 1 species 0 Aureimonas sp. AU20 1349819 324 11 genus 4 1 1089 293088 Martelella 0 510 293089 Martelella mediterranea 0 species 1 0 Martelella endophytica 1486262 335 1 species 0 233 2629616 1 no rank 0 Martelella sp. AD-3 686597 233 1 species 0 Methylocystaceae 31993 635 1 6 family 2 genus 2 24 425 274 0 Methylosinus 1 1 species 0 Methylosinus trichosporium 426 250 1 0 Methylocystis 133 359 4 3 genus 136 2625913 0 no rank 1 Methylocystis sp. SC2 0 136 187303 1 species 1 species Methylocystis bryophila 0 219 655015 772 3711 0 Bartonellaceae 1 family 18 3 3708 773 Bartonella 0 1 genus 17 32 391 1686310 Bartonella apis 0 species 1 species 1 33047 154 0 Bartonella vinsonii 1 species Bartonella henselae 0 157 38323 species 1 77 388640 Bartonella australis 0 1 species Bartonella clarridgeiae 0 402 56426 0 Bartonella ancashensis 1318743 340 1 species 1 species Bartonella tribocorum 0 190 85701 0 Bartonella grahamii 33045 259 1 species Bartonella bacilliformis 0 264 774 1 species no rank 6 2645622 1214 0 species 1 224 1933907 Bartonella sp. JB63 0 1 species 0 Bartonella sp. Raccoon60 1933912 75 0 Bartonella sp. A1379B 1933910 120 1 species 1 species 0 Bartonella sp. 1-1C 515256 123 species 1 449 1933904 Bartonella sp. WD16.2 0 223 1933906 Bartonella sp. JB15 0 species 1 1 species Bartonella quintana 0 228 803 1 Xanthobacteraceae 0 1229 335928 7 7 family 1 0 Xanthobacter 279 385 12 2 genus species 1 280 373 0 Xanthobacter autotrophicus genus 2 8 152053 347 0 Starkeya 1 0 Starkeya novella 921 339 1 species Azorhizobium 0 490 6 1 2 genus 7 Azorhizobium caulinodans 0 483 7 1 species 1 45401 3233 0 Hyphomicrobiaceae 7 family 19 Hyphomicrobium 0 832 81 1 4 genus 3 0 Hyphomicrobium nitrativorans 1427356 287 1 species 227 2619925 0 no rank 1 1 species Hyphomicrobium sp. MC1 0 227 717785 0 Hyphomicrobium denitrificans 53399 315 1 species Devosia 0 952 46913 1 4 genus 31 196773 921 0 no rank 3 2083786 180 0 Devosia sp. I507 species 1 1 species 0 Devosia sp. A16 1736675 458 1 species 0 Devosia sp. H5989 1643450 283 22 2 genus 1 0 Filomicrobium 119044 305 species 1 283 1608628 Candidatus Filomicrobium marinum 0 1082930 273 0 Pelagibacterium 1 genus 2 1 0 Pelagibacterium halotolerans 531813 272 1 species 0 Rhodomicrobium 1068 285 1 2 genus 1 1 species 0 Rhodomicrobium vannielii 1069 284 22 2 genus 1 0 Blastochloris 59282 316 1079 294 0 Blastochloris viridis species 1 20 2 genus 1 0 Rhodoplanes 29407 263 0 243 2619116 1 no rank Rhodoplanes sp. Z2-YC6860 0 243 674703 1 species order 5 456 2800060 0 5 family 5 1 69657 456 0 Hyphomonadaceae 2723 169 0 genus 1 169 2724 Hirschia baltica 0 species 1 4 3 genus 1 Hyphomonas 0 282 85 81032 206 0 Hyphomonas neptunium species 1 72 2630699 0 no rank 1 72 1906738 Hyphomonas sp. Mor2 0 species 1 2 order 0 522 2800059 0 522 2800061 2 family 2 genus 3 Maricaulis 0 522 74317 1 1 species 0 Maricaulis maris 74318 519 4 order 0 1921002 376 108 1777752 0 family 1 0 108 1521255 1 genus Candidatus Paracaedibacter acanthamoebae 0 108 91604 1 species 2 family 2 0 Caedimonadaceae 2100208 110 1 genus 1 108 1509243 0 species 1 1509244 108 0 Candidatus Nucleicultrix amoebiphila 158 44746 0 family 1 0 204454 158 1 no rank 0 endosymbiont of Acanthamoeba sp. UWC8 86106 158 1 species 1 0 Rickettsiales 766 5218 7 51 order 1 3404 775 Rickettsiaceae 0 1 family 26 0 182 2115980 1 genus species 1 182 2115978 Candidatus Phycorickettsia trachydisci 0 tribe 24 3221 33988 0 genus 1 460 69474 0 0 Orientia tsutsugamushi 784 460 1 species 1 0 Rickettsia 780 2761 334 23 genus 0 159 114295 1 no rank species 1 337479 159 0 Rickettsia endosymbiont of Bemisia tabaci species group 2 114292 350 0 1 species 0 Rickettsia prowazekii 782 154 0 Rickettsia typhi 785 196 1 species 17 species group 0 1460 114277 0 Rickettsia parkeri 35792 25 1 species Rickettsia felis 0 171 42862 1 species 1 species Rickettsia rickettsii 0 14 783 33991 12 0 Rickettsia montanensis species 1 1 species Rickettsia japonica 0 3 35790 781 12 0 Rickettsia conorii species 1 species 1 47589 27 0 Rickettsia peacockii Rickettsia rhipicephali 0 103 33992 1 species 787 407 0 Rickettsia australis species 1 species 1 15 35794 Rickettsia slovaca 0 0 Rickettsia monacensis 109232 107 1 species 33989 49 0 Rickettsia amblyommatis species 1 1 species 0 Rickettsia massiliae 35791 141 35788 38 0 Rickettsia africae species 1 Rickettsia akari 0 329 786 1 species 1 species Rickettsia philipii 0 3 1105106 226665 4 0 Rickettsia heilongjiangensis species 1 458 1129742 0 species group 2 193 788 Rickettsia canadensis 0 species 1 species 1 265 33990 Rickettsia bellii 0 1 21 family 1 0 Anaplasmataceae 942 1400 91 768 0 genus 3 770 14 0 Anaplasma marginale species 1 species 1 769 26 0 Anaplasma centrale 0 106179 51 1 species group species 1 51 948 Anaplasma phagocytophilum 0 8 tribe 0 546 952 genus 8 6 546 953 Wolbachia 0 1 0 540 2640676 7 no rank 1 species Wolbachia endosymbiont of Drosophila melanogaster 0 45 163164 1 species Wolbachia endosymbiont of Onchocerca volvulus 0 42 77551 species 1 100901 63 0 Wolbachia endosymbiont of Onchocerca ochengi 1 species Wolbachia endosymbiont of Cimex lectularius 0 39 246273 186 77038 Wolbachia endosymbiont of Drosophila simulans 0 species 1 species 1 80849 74 0 Wolbachia endosymbiont of Brugia malayi 66084 91 0 Wolbachia sp. wRi species 1 Neorickettsia 0 103 33993 1 4 genus 1 species 1 37 950 Neorickettsia risticii 0 0 Neorickettsia helminthoeca 33994 30 1 species 1 species 0 Neorickettsia sennetsu 951 35 943 659 0 genus 5 0 106181 101 1 no rank 1 species 0 Ehrlichia sp. HF 391036 101 0 106178 558 4 species group 0 Ehrlichia canis 944 157 1 species 1 species Ehrlichia muris 0 60 35795 species 1 945 141 0 Ehrlichia chaffeensis species 1 200 779 Ehrlichia ruminantium 0 1 no rank 0 1699067 233 1528098 233 0 Rickettsiales bacterium Ac37b species 1 Candidatus Midichloriaceae 0 174 1328881 1 2 family 1 173 411566 0 genus 1 0 Candidatus Midichloria mitochondrii 234827 173 1 species 232 order 60 1 204441 19470 0 Rhodospirillales 117 31 family 1 Acetobacteraceae 0 8823 433 7 genus 2 1 698 364409 Granulibacter 0 691 364410 Granulibacter bethesdensis 0 species 1 13 3 genus 1 0 Acidiphilium 522 473 524 218 0 Acidiphilium cryptum species 1 0 Acidiphilium multivorum 62140 242 1 species 1438 1434011 Komagataeibacter 0 1 genus 5 29 1 species Komagataeibacter xylinus 0 598 28448 0 Komagataeibacter nataicola 265960 399 1 species 1 species Komagataeibacter medellinensis 0 252 1177712 species 1 33995 160 0 Komagataeibacter europaeus 1 Gluconacetobacter 0 360 89583 2 2 genus 1 species Gluconacetobacter diazotrophicus 0 358 33996 20 genus 3 1 896 441 Gluconobacter 0 318683 167 0 Gluconobacter albidus species 1 species 1 709 442 Gluconobacter oxydans 0 0 159 320496 1 genus 1 species 0 Neoasaia chiangmaiensis 320497 159 genus 1 139 1602345 0 1 species 0 Parasaccharibacter apium 1510841 139 1 genus 0 105 91914 0 Asaia bogorensis 91915 105 1 species genus 8 17 3055 434 Acetobacter 0 1 1 species Acetobacter oryzifermentans 0 326 1633874 1 species Acetobacter persici 0 227 1076596 0 Acetobacter pomorum 65959 417 1 species species 1 1161 438 Acetobacter pasteurianus 0 Acetobacter tropicalis 0 293 104102 1 species species 1 446692 339 0 Acetobacter senegalensis 275 151157 0 subgenus 1 275 435 Acetobacter aceti 0 species 1 0 Roseomonas 125216 862 1 3 genus 12 408 257708 Roseomonas gilardii 0 species 1 1 no rank 0 442 2617492 0 Roseomonas sp. FDAARGOS_362 2018065 442 1 species 0 521 153497 1 genus 1 species 0 Kozakia baliensis 153496 521 162 28 family 1 Rhodospirillaceae 0 10415 41295 3 genus 14 0 Rhodospirillum 1081 672 1 Rhodospirillum centenum 0 410 34018 1 species species 1 248 1085 Rhodospirillum rubrum 0 1 genus 0 177 1612157 species 1 1084 177 0 Pararhodospirillum photometricum 91 genus 2 1 590 171436 Tistrella 0 1 species 0 Tistrella mobilis 171437 499 91 5 genus 1 Azospirillum 0 3437 191 528244 751 0 Azospirillum thiophilum species 1 Azospirillum lipoferum 0 994 193 1 species 0 Azospirillum brasilense 192 1326 1 species 1 species Azospirillum humicireducens 0 275 1226968 0 1263978 409 1 genus species 1 409 1263979 Candidatus Endolissoclinum faulkneri 0 5 genus 21 0 Magnetospirillum 13134 2196 1 Magnetospirillum gryphiswaldense 0 748 55518 1 species no rank 2 2617991 783 0 species 1 343 1663591 Magnetospirillum sp. XM-1 0 1 species Magnetospirillum sp. ME-1 0 440 1639348 0 Magnetospirillum magneticum 84159 644 1 species genus 1 151 1182780 0 1 no rank 0 151 2685734 species 1 151 1288970 Magnetospira sp. QH-2 0 1 0 Niveispirillum 1543704 459 9 2 genus 1 species Niveispirillum cyanobacteriorum 0 450 1612173 3 genus 15 0 Thalassospira 168934 989 1 2048283 472 0 Thalassospira sp. CSC3H3 species 1 502 220697 Thalassospira xiamenensis 0 species 1 genus 2 2 323 1804663 Haematospirillum 0 1 1 species 0 Haematospirillum jordaniae 1549855 321 7 2 genus 1 Nitrospirillum 0 850 1543705 0 Nitrospirillum amazonense 28077 843 1 species 938 54526 Pelagibacterales 0 1 order 8 2 2045213 215 0 genus 1 1 species Candidatus Fonsibacter ubiquis 0 215 1925548 1 Pelagibacteraceae 0 721 1655514 1 6 family 3 genus 2 Candidatus Pelagibacter 0 307 198251 1 0 Candidatus Pelagibacter ubique 198252 158 1 species 1 no rank 0 147 2647897 0 Candidatus Pelagibacter sp. IMCC9063 1002672 147 1 species 413 1655516 0 no rank 2 species 1 859653 223 0 alpha proteobacterium HIMB5 1 species 0 alpha proteobacterium HIMB59 744985 190 1 16577 204457 Sphingomonadales 0 104 order 80 118 family 57 1 13250 41297 Sphingomonadaceae 0 1 647 1434046 Sphingorhabdus 0 10 genus 3 0 637 2614947 2 no rank species 1 2077182 324 0 Sphingorhabdus sp. YGSMI21 1 species Sphingorhabdus sp. M41 0 313 1806885 1 genus 0 2709685 334 1 species Sphingorhabdus flavimaris 0 334 266812 genus 1 184 2685927 0 Sphingomonas sp. JJ-A5 0 184 1921510 1 species 1649486 284 0 genus 1 Rhizorhabdus dicambivorans 0 284 1850238 1 species 43 genus 10 1 2074 165697 Sphingopyxis 0 Sphingopyxis granuli 0 240 267128 1 species Sphingopyxis fribergensis 0 172 1515612 1 species no rank 4 2614943 648 0 1 species 0 Sphingopyxis sp. LPB0140 1913578 123 0 Sphingopyxis sp. QXT-31 1357916 174 1 species 185 1866325 Sphingopyxis sp. MG 0 species 1 292913 166 0 Sphingopyxis sp. 113P3 species 1 Sphingopyxis terrae 0 122 33052 1 species 33050 635 0 Sphingopyxis macrogoltabida species 1 214 117207 Sphingopyxis alaskensis 0 species 1 33 genus 15 1 13687 3384 0 Sphingomonas 152682 341 0 Sphingomonas melonis species 1 1 species Sphingomonas hengshuiensis 0 231 1609977 no rank 6 1498 196159 0 species 1 358 1030157 Sphingomonas sp. KC8 0 species 1 167 1938607 Sphingomonas sp. LM7 0 1390395 226 0 Sphingomonas sp. LK11 species 1 1 species 0 Sphingomonas sp. MM-1 745310 260 species 1 1327635 152 0 Sphingomonas sp. Cra20 0 Sphingomonas sp. NIC1 1961362 335 1 species species 1 93064 185 0 Sphingomonas koreensis 0 Sphingomonas taxi 1549858 277 1 species 152 1560345 Sphingomonas panacis 0 species 1 0 Sphingomonas sanxanigenens 397260 206 1 species 1 160791 461 0 Sphingomonas wittichii 250 species 2 211 1283312 Sphingomonas sp. DC-6 0 strain 1 genus 2 101 295 72173 Citromicrobium 0 1 0 2630544 194 1 no rank 1634516 194 0 Citromicrobium sp. JL477 species 1 15 genus 36 Sphingobium 0 3747 165695 1 1 species 0 Sphingobium chlorophenolicum 46429 241 0 Sphingobium indicum 332055 254 1 species species 1 253 1332080 Sphingobium baderi 0 species 1 306 332056 Sphingobium japonicum 0 1 species Sphingobium yanoikuyae 0 423 13690 species 1 216 76947 Sphingobium herbicidovorans 0 1565 2611147 0 no rank 6 1855519 157 0 Sphingobium sp. EP60837 species 1 0 Sphingobium sp. SYK-6 627192 541 1 species 1843368 184 0 Sphingobium sp. RAC03 species 1 species 1 251 484429 Sphingobium sp. YBL2 0 species 1 1315974 206 0 Sphingobium sp. TKS 407020 226 0 Sphingobium sp. MI1205 species 1 120107 249 0 Sphingobium cloacae species 1 1673076 204 0 Sphingobium hydrophobicum species 1 1 165696 1318 0 Novosphingobium 11 genus 5 576 158500 Novosphingobium resinovorum 0 species 1 Novosphingobium pentaromativorans 0 257 205844 1 species species 1 226 48935 Novosphingobium aromaticivorans 0 1 no rank 0 248 2644732 1 species 0 Novosphingobium sp. PP1Y 702113 248 1 genus 0 150203 190 0 190 2626550 1 no rank 190 1842535 Blastomonas sp. RAC04 0 species 1 65 genus 2 1 541 675 0 Zymomonas species 1 610 542 Zymomonas mobilis 0 22 family 70 0 Erythrobacteraceae 335929 3223 1 genus 1 2800682 292 0 645517 292 0 Altererythrobacter namhicola species 1 0 2800681 373 2 genus species 1 284 502682 Erythrobacter gangjinensis 0 species 1 89 1648404 Erythrobacter atlanticus 0 632 361177 Altererythrobacter 0 1 genus 4 14 Altererythrobacter atlanticus 0 232 1267766 1 species Altererythrobacter epoxidivorans 0 199 361183 1 species Altererythrobacter ishigakiensis 0 187 476157 1 species genus 2 1855416 225 0 192812 106 0 Erythrobacter flavus species 1 266951 119 0 Erythrobacter seohaensis species 1 0 174 2800685 1 genus species 1 174 543877 Altererythrobacter marensis 0 1 Croceicoccus 0 315 1295327 4 3 genus 1 species 0 Croceicoccus marinus 450378 193 1348774 118 0 Croceicoccus naphthovorans species 1 2 genus 0 400 2800686 1982042 202 0 Altererythrobacter mangrovi species 1 0 Altererythrobacter dongtanensis 692370 198 1 species 2800788 742 0 no rank 6 252 1111 Porphyrobacter 0 1 genus 3 5 no rank 2 247 2683265 0 1 species 0 Porphyrobacter HT-58-2 2023229 137 1 species 0 Porphyrobacter sp. LM 6 1896196 110 14 genus 3 1 1041 490 0 Erythrobacter 0 Erythrobacter litoralis 39960 350 1 species 126 1112 Porphyrobacter neustonensis 0 species 1 103 order 78 1 20186 204455 Rhodobacterales 0 1 Rhodobacteraceae 0 20083 31989 305 77 family 436357 1 0 Thalassococcus genus 1 genus 1 208 309512 0 species 1 215813 208 0 Dinoroseobacter shibae 406 1097466 Defluviimonas 0 1 genus 2 2 1335048 404 0 Defluviimonas alba species 1 genus 1 484 188905 0 0 2645469 484 1 no rank species 1 290400 484 0 Jannaschia sp. CCS1 genus 1 454 1649279 0 1 species 0 Ruegeria mobilis 379347 454 genus 3 8 495 92944 Ketogulonicigenium 0 1 species 1 233 92947 Ketogulonicigenium robustum 0 0 Ketogulonicigenium vulgare 92945 254 1 species genus 1 244 74032 0 0 Antarctobacter heliothermus 74033 244 1 species 0 74030 218 1 genus 215743 218 0 Roseovarius mucosus species 1 13 genus 2 1 360528 529 0 Pelagibaca species 1 1250539 516 0 Pelagibaca abyssi 0 Celeribacter 875170 911 1 5 genus 4 280 1758178 Celeribacter ethanolicus 0 species 1 0 Celeribacter manganoxidans 1411902 292 1 species Celeribacter marinus 0 72 1397108 1 species 1208324 263 0 Celeribacter indicus species 1 0 Phaeobacter 302485 2304 1 5 genus 12 812 221822 Phaeobacter inhibens 0 species 1 Phaeobacter gallaeciensis 0 667 60890 1 species 1 species Phaeobacter porticola 0 129 1844006 species 1 684 1580596 Phaeobacter piscinae 0 genus 1 58842 399 0 0 2624628 399 1 no rank 2009329 399 0 Sagittula sp. P11 species 1 9 genus 43 0 Paracoccus 265 2534 1 0 Paracoccus zhejiangensis 1077935 414 1 species 1 species Paracoccus aminovorans 0 319 34004 species 1 247 1945662 Paracoccus contaminans 0 no rank 1 246570 219 0 species 1 1529068 219 0 Paracoccus sp. BM15 1 species Paracoccus yeei 0 365 147645 2065379 219 0 Paracoccus sp. CBA4604 species 1 Paracoccus aminophilus 0 308 34003 1 species species 1 266 400 0 Paracoccus denitrificans 1 genus 0 303 119541 species 1 441209 303 0 Rhodobaca barguzinensis 2 genus 0 2433 360 2434 231 0 Roseobacter denitrificans species 1 Roseobacter litoralis 0 129 42443 1 species 0 1579315 63 1 genus species 1 63 1579316 Halocynthiibacter arcticus 0 1 genus 0 303 191028 Leisingera methylohalidivorans 0 303 133924 1 species 0 819 60136 2 genus 278 196795 0 no rank 1 278 1917485 Sulfitobacter sp. AM1-D1 0 species 1 1 species 0 Sulfitobacter pseudonitzschiae 1402135 541 1 0 Pannonibacter 227873 410 1 2 genus 1 species 0 Pannonibacter phragmitetus 121719 409 1 genus 0 148 1759396 no rank 1 2622455 148 0 species 1 1920883 148 0 Marivivens sp. JLT3646 4 genus 4 Rhodovulum 0 934 34008 1 2631432 517 0 no rank 2 0 Rhodovulum sp. P5 1564506 352 1 species 1 species 0 Rhodovulum sp. MB263 308754 165 413 35806 Rhodovulum sulfidophilum 0 species 1 genus 1 207 2211641 0 1 species 0 Loktanella vestfoldensis 245188 207 Rhodobacter 0 1592 1060 1 5 genus 8 1 species 0 Rhodobacter sphaeroides 1063 851 0 196779 387 2 no rank 1 species Rhodobacter sp. LPB0142 0 173 1850250 Rhodobacter sp. CZR27 0 214 2033869 1 species species 1 1061 346 0 Rhodobacter capsulatus 2 genus 0 263377 709 0 330 2640570 1 no rank species 1 330 1792508 Yangia sp. CCB-MM3 0 1 species 0 Thiobacimonas profunda 1229727 379 genus 1 284 299261 0 299262 284 0 Tateyamaria omphalii species 1 genus 2 97050 583 0 species 1 89184 419 0 Ruegeria pomeroyi 2625375 164 0 no rank 1 Ruegeria sp. TM1040 0 164 292414 1 species no rank 2 58840 635 0 Rhodobacteraceae bacterium QY30 0 272 2033435 1 species 0 Rhodobacteraceae bacterium 1904441 363 1 species Octadecabacter 0 566 53945 1 4 genus 11 species 1 322 53946 Octadecabacter arcticus 0 92 1217908 Octadecabacter antarcticus 0 species 1 1458307 141 0 Octadecabacter temperatus species 1 1 genus 0 211 285107 0 Thioclava nitratireducens 1915078 211 1 species 2 genus 3 0 Confluentimicrobium 1609958 440 1 no rank 1 2643318 437 0 Confluentimicrobium sp. EMB200-NS6 0 437 1609966 1 species 0 1284657 110 1 genus 1 species Planktomarina temperata 0 110 1284658 375 367771 Marinovum 0 1 genus 2 10 species 1 365 42444 Marinovum algicola 0 2 genus 2 1 159345 259 0 Roseibacterium 1 species 0 Roseibacterium elongatum 159346 257 1 478070 1280 0 Labrenzia 21 genus 4 1 species 0 Labrenzia aggregata 187304 377 no rank 2 2648686 882 0 species 1 488 1674922 Labrenzia sp. CP4 0 1 species Labrenzia sp. VG12 0 394 2021862 1 class 5 1 580370 478 0 Zetaproteobacteria order 4 6 477 580371 Mariprofundales 0 1 family 3 471 580372 0 1 471 377315 Mariprofundus 0 1 genus 3 1 species 0 Mariprofundus ferrinatatus 1921087 176 species 1 294 1921086 Mariprofundus aestuarium 0 1 2128 1553900 Oligoflexia 0 3 class 11 1 2024979 845 0 Bacteriovoracales 2 order 5 0 246 1652132 2 family 0 Halobacteriovorax 1652133 246 1 2 genus 1 0 Halobacteriovorax marinus 97084 245 1 species 2 family 0 263369 597 1 597 146784 Bacteriovorax 0 2 genus 2 1 species Bacteriovorax stolpii 0 595 960 1280 213481 Bdellovibrionales 0 1 order 5 10 23 family 4 1 213483 1270 0 Bdellovibrionaceae 1 3 genus 1 0 Bdellovibrio 958 1247 959 1142 0 Bdellovibrio bacteriovorus species 1 1 species 0 Bdellovibrio exovorus 453816 104 32066 23026 0 phylum 24 203490 23026 0 Fusobacteriia 1 class 24 45 order 23 9 22981 203491 Fusobacteriales 0 1 1 1129771 5689 0 Leptotrichiaceae 8 family 10 Leptotrichia 0 3132 32067 1 5 genus 9 0 2633022 2172 3 no rank 712357 1131 0 Leptotrichia sp. oral taxon 212 species 1 1 species Leptotrichia sp. oral taxon 498 0 456 712368 1785996 585 0 Leptotrichia sp. oral taxon 847 species 1 951 40542 Leptotrichia buccalis 0 species 1 1 genus 0 596 34104 Streptobacillus moniliformis 0 596 34105 1 species 790 168808 Sneathia 0 1 genus 2 1 species 1 789 187101 Sneathia amnii 0 1163 32068 0 genus 1 1 species 0 Sebaldella termitidis 826 1163 22 family 12 1 203492 17283 0 Fusobacteriaceae 1 genus 2 1 1067 167639 Ilyobacter 0 1 species 0 Ilyobacter polytropus 167642 1066 1 848 16194 0 Fusobacterium 32 genus 9 Fusobacterium gonidiaformans 0 744 849 1 species 2621 856 Fusobacterium varium 0 species 1 860 3017 0 Fusobacterium periodonticum species 1 1583098 1745 0 Fusobacterium hwasookii species 1 species 1 859 714 0 Fusobacterium necrophorum 0 Fusobacterium nucleatum 851 4954 1 species 861 1419 0 Fusobacterium ulcerans species 1 Fusobacterium mortiferum 0 948 850 1 species 0 8987 200918 40 phylum 1 8987 188708 Thermotogae 0 45 class 40 order 28 3 5850 2419 Thermotogales 0 1 6 family 10 1 1643950 3026 0 Fervidobacteriaceae 0 Fervidobacterium 2422 1003 1 4 genus 3 Fervidobacterium pennivorans 0 300 93466 1 species 2424 363 0 Fervidobacterium nodosum species 1 2423 337 0 Fervidobacterium islandicum species 1 8 5 genus 1 0 Thermosipho 2420 2017 no rank 2 1113 2676525 0 0 Thermosipho sp. 1070 1437364 559 1 species Thermosipho sp. 1063 0 554 1462747 1 species 0 Thermosipho melanesiensis 46541 322 1 species 1 species Thermosipho africanus 0 574 2421 9 17 family 1 Thermotogaceae 0 2821 188709 0 Pseudothermotoga 1643951 904 1 5 genus 3 Pseudothermotoga lettingae 0 260 177758 1 species 0 Pseudothermotoga hypogea 57487 101 1 species species 1 267 38322 Pseudothermotoga elfii 0 Pseudothermotoga thermarum 0 273 119394 1 species 11 genus 15 0 Thermotoga 2335 1908 1 171 2336 Thermotoga maritima 0 species 1 156 1508419 Thermotoga caldifontis 0 species 1 93930 193 0 Thermotoga naphthophila species 1 1 species Thermotoga profunda 0 174 1508420 0 756 2631113 4 no rank Thermotoga sp. RQ2 0 176 126740 1 species species 1 165 1157948 Thermotoga sp. 2812B 0 126738 264 0 Thermotoga sp. RQ7 species 1 Thermotoga sp. Cell2 0 151 1157947 1 species 1 species 0 Thermotoga petrophila 93929 151 1 species 0 Thermotoga neapolitana 2337 292 0 1643946 682 3 order 682 1643948 0 family 3 0 554 651456 2 genus 1 species Kosmotoga pacifica 0 357 1330330 species 1 651457 197 0 Kosmotoga olearia 0 128 1184396 1 genus 0 Mesotoga prima 1184387 128 1 species 3 8 order 1 Petrotogales 0 2410 1643947 family 7 1643949 2407 0 2 genus 2 1 506 1511648 Defluviitoga 0 504 1006576 Defluviitoga tunisiensis 0 species 1 genus 2 2 28236 266 0 Petrotoga 1 0 Petrotoga mobilis 69499 264 1 species 1 0 Marinitoga 160798 1635 17 3 genus 1 species Marinitoga piezophila 0 903 149715 no rank 1 2640159 715 0 0 Marinitoga sp. 1137 1545835 715 1 species 0 1109 68297 3 phylum 1109 203486 0 class 3 1109 203487 0 order 3 family 3 1109 203488 0 1 0 Dictyoglomus 13 1109 1 3 genus species 1 14 594 0 Dictyoglomus thermophilum species 1 514 513050 Dictyoglomus turgidum 0 0 1222 74152 7 phylum class 2 326 641853 0 order 2 326 641854 0 2 family 0 326 641876 3 genus 2 1 423604 326 0 Elusimicrobium 1 species Elusimicrobium minutum 0 323 423605 class 4 447830 683 0 order 4 1783344 683 0 1 Endomicrobiaceae 0 683 1783343 19 4 family 3 genus 2 Endomicrobium 0 664 1408194 1 430 1408281 Endomicrobium proavitum 0 species 1 1 species 0 Candidatus Endomicrobium trichonymphae 1408204 232 0 213 99260 1 no rank 167965 213 0 uncultured Termite group 1 bacterium species 1 0 0 name 1 superkingdom 253 25829 2157 0 3067 1783275 0 clade 46 10 phylum 0 972 651137 1643678 195 0 class 3 1033996 102 0 order 1 1 family 0 1033997 102 1 genus 0 497726 102 1034015 102 0 Nitrososphaera viennensis species 1 order 2 1 93 1968909 Candidatus Nitrosocaldales 0 1 92 1968910 0 family 1 1 genus 0 498374 92 2045011 92 0 Candidatus Nitrosocaldus islandicus species 1 0 Nitrosopumilales 31932 657 1 4 order 1 338190 656 0 family 3 0 1993653 163 1 genus species 1 163 1898749 Candidatus Nitrosomarinus catalina 0 493 338191 0 genus 2 1580092 321 0 Candidatus Nitrosopumilus adriaticus species 1 172 1229909 Candidatus Nitrosopumilus sediminis 0 species 1 3 no rank 0 651142 120 genus 2 1825023 55 0 1 species 0 Candidatus Nitrosotenuis sp. AQ6f 1846278 34 1 species 0 Candidatus Nitrosotenuis cloacae 1603555 21 1 genus 0 65 1593364 Candidatus Nitrosopelagicus brevis 0 65 1410606 1 species 0 28889 2063 35 phylum 35 class 12 Thermoprotei 0 2063 183924 1 0 871006 102 2 order family 1 26 871007 0 0 105850 26 1 genus species 1 26 242703 Acidilobus saccharovorans 0 family 1 76 255472 0 200414 76 0 genus 1 species 1 200415 76 0 Caldisphaera lagunensis 1 9 order 1 0 Sulfolobales 2281 1218 0 118883 1217 8 family 69655 188 0 genus 1 Sulfolobus tokodaii 0 188 111955 1 species 2 genus 0 122 41980 1 species 0 Metallosphaera sedula 43687 101 species 1 21 1006005 Metallosphaera cuprina 0 1 genus 0 12914 346 0 Acidianus hospitalis 563177 346 1 species genus 3 2284 427 0 species 1 43080 142 0 Sulfolobus islandicus 1 no rank 0 2641160 231 species 1 231 1891280 Sulfolobus sp. A20 0 1 species 0 Sulfolobus acidocaldarius 2285 54 genus 1 134 2100760 0 2287 134 0 Sulfolobus solfataricus species 1 12 order 0 2266 374 family 4 151 114378 0 genus 4 2268 151 0 Thermofilum carboxyditrophus 0 51 1483572 1 species 1365176 56 0 Thermofilum adornatus species 1 species 1 2269 21 0 Thermofilum pendens 1550241 23 0 Thermofilum uzonense species 1 2267 223 0 Thermoproteaceae 1 family 8 1 1 genus 0 72 76886 species 1 72 76887 Caldivirga maquilingensis 0 3 genus 3 1 164450 56 0 Vulcanisaeta Vulcanisaeta moutnovskia 0 19 985052 1 species 164451 34 0 Vulcanisaeta distributa species 1 0 34 2270 2 genus species 1 13 2271 Thermoproteus tenax 0 0 Thermoproteus uzoniensis 184117 21 1 species 0 2276 60 1 genus Pyrobaculum islandicum 0 60 2277 1 species 0 114380 357 11 order 314 2272 0 family 8 0 53 54253 1 genus 1 species Thermosphaera aggregans 0 53 54254 0 12 477695 1 genus 1 species Thermogladius calderae 0 12 1200300 0 2279 204 2 genus 0 Staphylothermus marinus 2280 121 1 species species 1 83 84599 Staphylothermus hellenicus 0 2 genus 0 27 2273 0 Desulfurococcus mucosus 2275 8 1 species 19 94694 Desulfurococcus amylolyticus 0 species 1 18 54258 0 genus 2 species 1 54259 3 0 Ignicoccus islandicus species 1 160233 15 0 Ignicoccus hospitalis 3 family 0 2307 43 genus 1 2308 19 0 1273541 19 0 Pyrodictium delaneyi species 1 1 genus 0 54251 12 1 species Pyrolobus fumarii 0 12 54252 12 54247 0 genus 1 1 species Hyperthermus butylicus 0 12 54248 0 32 51967 1 phylum genus 1 498845 32 0 498846 32 0 Candidatus Korarchaeum cryptofilum species 1 0 Euryarchaeota 28890 22733 1 206 phylum 1 clade 39 6998 2283794 0 1 0 Methanococci 183939 3231 5 17 class 2182 3226 0 Methanococcales 1 order 16 3 9 family 0 1199 196117 1 0 Methanocaldococcus 196118 993 1 7 genus Methanocaldococcus infernus 0 165 67760 1 species Methanocaldococcus jannaschii 0 207 2190 1 species 1 species Methanocaldococcus fervens 0 93 83171 1 no rank 0 177 2641196 species 1 644281 177 0 Methanocaldococcus sp. FS406-22 species 1 233 1301915 Methanocaldococcus bathoardescens 0 Methanocaldococcus vulcanius 0 117 73913 1 species genus 2 1 206 196119 Methanotorris 0 1 species 1 205 2189 Methanotorris igneus 0 1 2024 2183 Methanococcaceae 0 2 family 6 4 genus 0 2184 1780 Methanococcus voltae 0 161 2188 1 species Methanococcus maripaludis 0 1088 39152 1 species 334 2187 Methanococcus vannielii 0 species 1 1 species 0 Methanococcus aeolicus 42879 197 0 242 155862 1 genus 242 155863 Methanothermococcus okinawensis 0 species 1 22 class 2 0 Methanobacteria 183925 3767 1 order 21 3765 2158 0 2159 3655 0 family 20 4 genus 0 145260 169 44 145263 Methanothermobacter marburgensis 0 species 1 0 Methanothermobacter thermautotrophicus 145262 32 1 species 1 no rank 0 42 2631116 species 1 866790 42 0 Methanothermobacter sp. CaT2 1 species Methanothermobacter wolfeii 0 51 145261 1 0 Methanobrevibacter 2172 2050 1 7 genus species 1 2173 496 0 Methanobrevibacter smithii 305 294671 Methanobrevibacter olleyae 0 species 1 2 no rank 0 622 2638681 species 1 361 224719 Methanobrevibacter sp. AbM4 0 261 1609968 Methanobrevibacter sp. YE315 0 species 1 1 species 0 Methanobrevibacter ruminantium 83816 183 0 Methanobrevibacter millerae 230361 443 1 species 321 2316 0 genus 1 Methanosphaera stadtmanae 0 321 2317 1 species genus 8 1 1115 2160 Methanobacterium 0 1 Methanobacterium lacus 0 261 877455 1 species 1 species 0 Methanobacterium paludis 868131 117 301 2627676 0 no rank 2 species 1 147 1911685 Methanobacterium sp. MZ-A1 0 species 1 154 1379702 Methanobacterium sp. MB1 0 118062 175 0 Methanobacterium congolense species 1 species 1 59277 136 0 Methanobacterium subterraneum species 1 124 2162 Methanobacterium formicicum 0 0 2178 110 1 family genus 1 110 2179 0 1 species Methanothermus fervidus 0 110 2180 102 clade 0 2290931 11204 3814 183963 Halobacteria 0 1 class 57 24 Halobacteriales 0 1547 2235 1 23 order 20 4 family 15 1 1029 1963268 Haloarculaceae 0 0 399 146825 2 genus 0 Halorhabdus tiamatea 430914 158 1 species 146826 241 0 Halorhabdus utahensis species 1 Halorientalis 0 89 1073987 1 2 genus 2 no rank 1 2648975 87 0 species 1 87 1932360 Halorientalis sp. IM1011 0 genus 3 1 63743 75 0 Natronomonas 1 Natronomonas moolapensis 0 36 416273 1 species 38 2257 Natronomonas pharaonis 0 species 1 2 2 genus 1 0 Halomicrobium 203135 94 species 1 57705 92 0 Halomicrobium mukohataei 5 genus 3 0 Haloarcula 2237 368 1 Haloarcula marismortui 0 129 2238 1 species 84 51589 Haloarcula hispanica 0 species 1 1 species Haloarcula taiwanensis 0 56 1932004 0 96 2624677 1 no rank species 1 1592728 96 0 Haloarcula sp. CBA1115 7 family 0 498 2236 270 2239 0 genus 3 species 1 95 1407499 Halobacterium hubeiense 0 no rank 1 82 2668073 0 82 751944 Halobacterium sp. DL1 0 species 1 1 species Halobacterium salinarum 0 93 2242 0 68 1980514 1 genus Halodesulfurarchaeum formicicum 0 68 1873524 1 species 1 genus 2 1 332246 105 0 Halalkalicoccus species 1 104 413810 Halalkalicoccus jeotgali 0 genus 1 1656823 55 0 0 Halanaeroarchaeum sulfurireducens 1604004 55 1 species order 17 10 1106 1644060 Natrialbales 0 1 family 16 8 1096 1644061 Natrialbaceae 0 1 353799 89 0 genus 1 1 species 0 Halostagnicola larsenii 353800 89 1 genus 0 1269201 72 0 2621923 72 1 no rank 0 Salinarchaeum sp. Harcht-Bsk1 1333523 72 1 species 1 genus 0 29287 158 158 29288 Natronococcus occultus 0 species 1 150 63742 Natrialba 0 1 genus 2 1 0 Natrialba magadii 13769 149 1 species 3 genus 2 Natrinema 0 246 88723 1 species 1 97 69525 Natrinema pellirubrum 0 1 no rank 0 2622230 147 1 species 0 Natrinema sp. J7-2 406552 147 69 387342 0 genus 1 0 Halopiger xanaduensis 387343 69 1 species 2256 44 0 genus 1 species 1 44930 44 0 Natronobacterium gregoryi 1 166 121871 Haloterrigena 0 1 genus 3 1 species Haloterrigena turkmenica 0 100 62320 species 1 588898 65 0 Haloterrigena daqingensis genus 2 1 203193 94 0 Halobiforma 1 1 species 0 Halobiforma lacisalsi 229731 93 10 16 order 1 0 Haloferacales 1644055 1137 1 7 family 1 Haloferacaceae 0 763 1644056 0 199 293431 1 genus 199 293091 Haloquadratum walsbyi 0 species 1 2251 511 0 genus 3 species 1 208 35746 Haloferax gibbonsii 0 species 1 68 2252 Haloferax mediterranei 0 species 1 235 2246 Haloferax volcanii 0 1 genus 2 1 52 60846 Halogeometricum 0 0 Halogeometricum borinquense 60847 51 1 species 1 no rank 0 2678336 60 species 1 756883 60 0 halophilic archaeon DL31 7 family 5 0 Halorubraceae 1963271 304 1 2 genus 1 Salinigranum 0 96 1644057 1 species 1 95 755307 Salinigranum rubrum 0 151 56688 Halorubrum 0 1 genus 3 2 species 1 80 29284 Halorubrum trapanicum 0 1 species Halorubrum lacusprofundi 0 69 2247 genus 1 1209988 52 0 0 Halopenitus persicus 1048396 52 1 species 1 0 Methanomicrobia 224756 7390 10 45 class 2191 1708 0 Methanomicrobiales 1 order 13 4 285 88404 0 family 1 285 2192 0 genus 1 species 1 83984 285 0 Methanocorpusculum labreanum 0 381 1198451 3 family genus 2 395331 152 0 358766 71 0 Methanoregula boonei species 1 81 882104 Methanoregula formicica 0 species 1 1 genus 0 475087 229 species 1 229 475088 Methanosphaerula palustris 0 family 2 434 196137 0 434 2202 Methanospirillum 0 1 genus 2 1 Methanospirillum hungatei 0 433 2203 1 species family 6 2 604 2194 Methanomicrobiaceae 0 1 genus 4 5 389 45989 Methanoculleus 0 1 species 1 83986 159 0 Methanoculleus bourgensis 87 2198 Methanoculleus marisnigri 0 species 1 no rank 1 138 2619537 0 138 86622 Methanoculleus sp. MAB1 0 species 1 213 230355 0 genus 1 species 1 54120 213 0 Methanolacinia petrolearia 2 order 28 1 94695 5387 0 Methanosarcinales 1 0 Methanosaetaceae 143067 329 1 3 family 2 genus 0 2222 328 1 species Methanothrix soehngenii 0 152 2223 176 301375 Methanosaeta harundinacea 0 species 1 2 family 24 1 2206 5056 0 Methanosarcinaceae 1 2175 399 0 Methanohalophilus 3 genus 3 2176 270 0 Methanohalophilus mahii species 1 126 2177 Methanohalophilus halophilus 0 species 1 1 genus 0 198 2321 2322 198 0 Methanohalobium evestigatum species 1 genus 3 3 305 2225 Methanococcoides 0 1 1 species Methanococcoides burtonii 0 103 29291 species 1 2226 199 0 Methanococcoides methylutens 238 101191 0 genus 1 species 1 101192 238 0 Methanomethylovorans hollandica 253 196136 0 genus 1 1 species Methanosalsum zhilinae 0 253 39669 1 genus 0 224 2220 1 species 0 Methanolobus psychrophilus 420950 224 Methanosarcina 0 3437 2207 1 13 genus 4 1 species 0 Methanosarcina siciliae 38027 218 1 species 0 Methanosarcina vacuolata 2215 221 1 species Methanosarcina acetivorans 0 251 2214 768 2644672 0 no rank 4 1 species Methanosarcina sp. Kolksee 0 226 1434099 species 1 159 1434103 Methanosarcina sp. WWM596 0 1 species Methanosarcina sp. MTP4 0 240 1434100 1 species Methanosarcina sp. WH1 0 143 1434102 Methanosarcina thermophila 0 180 2210 1 species 1 species 0 Methanosarcina horonobensis 418008 280 species 1 170861 178 0 Methanosarcina lacustris species 1 895 2208 Methanosarcina barkeri 0 species 1 442 2209 Methanosarcina mazei 0 96 order 3 1 285 570264 Methanocellales 0 570265 189 0 family 2 570266 189 0 genus 2 species 1 1175444 61 0 Methanocella conradii species 1 128 1175445 Methanocella arvoryzae 0 class 7 183980 549 0 0 549 2231 7 order family 7 2232 549 0 374 2233 0 genus 4 Archaeoglobus veneficus 0 93 58290 1 species 1 species 0 Archaeoglobus profundus 84156 30 1 species Archaeoglobus sulfaticallidus 0 139 1316941 2234 112 0 Archaeoglobus fulgidus species 1 128 190818 0 genus 2 species 1 23 113653 Geoglobus ahangari 0 species 1 105 565033 Geoglobus acetivorans 0 47 54260 0 genus 1 1 species 0 Ferroglobus placidus 54261 47 39 class 0 2671 183968 1 Thermococcales 0 2671 2258 7 39 order 1 2664 2259 Thermococcaceae 0 6 family 38 7 genus 0 2260 641 2 no rank 0 2629106 175 1 species 0 Pyrococcus sp. NA2 342949 84 1183377 91 0 Pyrococcus sp. ST04 species 1 species 1 60 29292 Pyrococcus abyssi 0 species 1 1008460 29 0 Pyrococcus yayanosii 0 Pyrococcus horikoshii 53953 115 1 species 1 species 0 Pyrococcus kukulkanii 1609559 32 species 1 2261 230 0 Pyrococcus furiosus genus 1 83867 230 0 Palaeococcus pacificus 0 230 971279 1 species 6 29 genus 1 Thermococcus 0 1787 2263 Thermococcus piezophilus 0 25 1712654 1 species species 1 112 53952 Thermococcus peptonophilus 0 1 species 0 Thermococcus gammatolerans 187878 49 1 species Thermococcus barophilus 0 257 55802 89 172049 Thermococcus sibiricus 0 species 1 no rank 6 2627626 327 0 species 1 102 246969 Thermococcus sp. AM4 0 Thermococcus sp. P6 0 32 122420 1 species 1 species Thermococcus sp. EXT12c 0 26 2016361 species 1 1674923 84 0 Thermococcus sp. 2319x1 1 species Thermococcus sp. 5-4 0 42 2008440 1 species Thermococcus sp. 4557 0 41 1042877 species 1 110164 107 0 Thermococcus guaymasensis species 1 100 54077 Thermococcus barossii 0 Thermococcus paralvinellae 0 177 582419 1 species species 1 53 163003 Thermococcus cleftensis 0 species 1 14 49899 Thermococcus profundus 0 1505907 70 0 Thermococcus eurythermalis species 1 0 Thermococcus kodakarensis 311400 21 1 species species 1 41 2264 Thermococcus celer 0 species 1 52 2265 Thermococcus litoralis 0 species 1 38 72803 Thermococcus siculi 0 35 195522 Thermococcus nautili 0 species 1 187880 26 0 Thermococcus radiotolerans species 1 71998 35 0 Thermococcus pacificus species 1 Thermococcus chitonophagus 0 44 54262 1 species 1 species 0 Thermococcus thioreducens 277988 52 1 species Thermococcus gorgonarius 0 42 71997 species 1 342948 15 0 Thermococcus onnurineus 1310 2283796 0 clade 18 class 16 11 183967 1182 0 Thermoplasmata 1 Thermoplasmatales 0 638 2301 1 9 order 1 0 46630 88 1 family 46631 88 0 genus 1 88 82076 Picrophilus torridus 0 species 1 0 90142 157 3 family Ferroplasma 0 157 74968 1 3 genus 3 97393 90 0 Ferroplasma acidarmanus species 1 Ferroplasma acidiphilum 0 64 74969 1 species no rank 1 103 1919231 0 1 species 0 Thermoplasmatales archaeon BRNA1 1054217 103 family 1 1747776 112 0 genus 1 1747777 112 0 1673428 112 0 Cuniculiplasma divulgatum species 1 0 177 46659 2 family 0 2302 177 2 genus species 1 2303 123 0 Thermoplasma acidophilum 1 species 0 Thermoplasma volcanium 50339 54 no rank 1 1234666 159 0 species 1 159 1495144 methanogenic archaeon ISO4-H5 0 5 order 0 1235850 374 2 family 0 103 2517203 2 genus 15 0 Candidatus Methanomethylophilus 1291539 103 1 species 1 88 1291540 Candidatus Methanomethylophilus alvus 0 3 family 1 Methanomassiliicoccaceae 0 271 1577788 1 0 117 1607807 1 genus 1 species Candidatus Methanoplasma termitum 0 117 1577791 0 153 1080709 1 genus 0 Candidatus Methanomassiliicoccus intestinalis 1406512 153 1 species clade 2 1803510 128 0 0 128 379546 2 genus 15 2633939 0 no rank 1 species 1 15 673860 Aciduliprofundum sp. MAR08-339 0 113 379547 Aciduliprofundum boonei 0 species 1 0 29 1783276 1 clade phylum 1 1801631 29 0 1 genus 0 2490204 29 1 species 0 Candidatus Micrarchaeota archaeon Mia14 1920749 29