members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 31 37788 4703 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 32127318 name 1 0 0 274 0 superkingdom 61341 2157 4 223 0 phylum 28890 1 Euryarchaeota 54556 15921 2283794 0 clade 45 1 183925 8928 Methanobacteria 0 class 27 5 1 2158 8923 Methanobacteriales order 0 26 4 2159 1 Methanobacteriaceae 8674 23 2 0 family 3 2 genus 0 2316 1 Methanosphaera 973 970 Methanosphaera stadtmanae 2317 species 0 1 0 genus 1 5 1 145260 559 Methanothermobacter 0 species 1 145263 148 Methanothermobacter marburgensis 92 2631116 no rank 0 1 0 species 1 92 Methanothermobacter sp. CaT2 866790 145261 Methanothermobacter wolfeii 154 1 0 species 145262 164 Methanothermobacter thermautotrophicus species 0 1 1977 Methanobacterium 1 2160 0 genus 8 2 59277 Methanobacterium subterraneum 138 1 0 species species 0 1 265 Methanobacterium formicicum 2162 0 species 1 877455 496 Methanobacterium lacus 1 0 species Methanobacterium paludis 339 868131 0 no rank 2 2627676 460 1 0 species 1911685 Methanobacterium sp. MZ-A1 220 Methanobacterium sp. MB1 240 1379702 1 0 species 1 species 0 Methanobacterium congolense 277 118062 1 2172 5163 Methanobrevibacter genus 0 7 7 1 0 species Methanobrevibacter olleyae 1085 294671 1099 2638681 2 no rank 0 0 species 1 551 Methanobrevibacter sp. AbM4 224719 species 0 1 1609968 548 Methanobrevibacter sp. YE315 0 species 1 2173 997 Methanobrevibacter smithii 230361 Methanobrevibacter millerae 1066 1 species 0 1 0 species 83816 Methanobrevibacter ruminantium 909 2178 1 Methanothermaceae 245 2 2 family 0 243 2179 1 genus 0 0 species 1 243 Methanothermus fervidus 2180 18 2 class 0 183939 1 Methanococci 6993 0 order 4 17 6991 Methanococcales 1 2182 4 7 0 family 2183 1 Methanococcaceae 4028 0 genus 5 1 3615 Methanococcus 1 2184 39152 2384 Methanococcus maripaludis species 0 1 2187 Methanococcus vannielii 268 1 0 species 0 species 1 571 Methanococcus voltae 2188 1 species 0 42879 Methanococcus aeolicus 391 409 155862 1 0 genus 155863 Methanothermococcus okinawensis 409 1 species 0 2959 196117 9 0 family 516 Methanotorris 1 196119 0 genus 2 5 Methanotorris igneus 511 2189 1 species 0 genus 0 1 7 2443 Methanocaldococcus 1 196118 1 0 species Methanocaldococcus bathoardescens 568 1301915 1 0 species Methanocaldococcus fervens 284 83171 0 species 1 388 Methanocaldococcus vulcanius 73913 species 0 1 2190 402 Methanocaldococcus jannaschii 67760 Methanocaldococcus infernus 362 1 species 0 2641196 438 1 no rank 0 438 Methanocaldococcus sp. FS406-22 644281 0 species 1 183968 1 Thermococci 5377 6 40 0 class 39 8 0 order 2258 1 Thermococcales 5371 5363 Thermococcaceae 1 2259 family 0 19 38 0 genus 1 83867 150 1 species 0 971279 Palaeococcus pacificus 150 0 genus 29 33 4305 Thermococcus 1 2263 195522 185 Thermococcus nautili 0 species 1 145 Thermococcus radiotolerans 187880 species 0 1 78 Thermococcus kodakarensis 311400 0 species 1 54262 Thermococcus chitonophagus 106 1 species 0 1 species 0 Thermococcus piezophilus 101 1712654 0 species 1 187878 122 Thermococcus gammatolerans 0 species 1 277988 162 Thermococcus thioreducens 1505907 Thermococcus eurythermalis 79 1 species 0 Thermococcus barossii 56 54077 1 0 species 1 0 species Thermococcus litoralis 236 2265 Thermococcus peptonophilus 192 53952 1 0 species 1 species 0 Thermococcus celer 141 2264 0 species 1 125 Thermococcus pacificus 71998 1 0 species 342948 Thermococcus onnurineus 147 species 0 1 49899 129 Thermococcus profundus 0 species 1 72803 113 Thermococcus siculi Thermococcus sibiricus 143 172049 1 0 species species 0 1 130 Thermococcus cleftensis 163003 71997 163 Thermococcus gorgonarius species 0 1 111 Thermococcus guaymasensis 110164 species 0 1 1079 2627626 no rank 0 6 290 Thermococcus sp. AM4 246969 0 species 1 species 0 1 162 Thermococcus sp. EXT12c 2016361 0 species 1 1042877 260 Thermococcus sp. 4557 Thermococcus sp. 2319x1 200 1674923 1 0 species 1 0 species Thermococcus sp. 5-4 60 2008440 1 0 species Thermococcus sp. P6 107 122420 253 Thermococcus barophilus 55802 species 0 1 1 species 0 Thermococcus paralvinellae 276 582419 genus 0 7 889 2260 1609559 Pyrococcus kukulkanii 100 1 0 species 53953 118 Pyrococcus horikoshii species 0 1 1008460 Pyrococcus yayanosii 91 1 species 0 1 0 species 2261 Pyrococcus furiosus 223 2629106 261 2 no rank 0 127 Pyrococcus sp. NA2 342949 species 0 1 0 species 1 1183377 134 Pyrococcus sp. ST04 29292 Pyrococcus abyssi 96 1 species 0 class 0 8 1 1266 Archaeoglobi 1 183980 1265 2231 0 order 7 1265 2232 7 0 family 190818 511 genus 0 2 565033 Geoglobus acetivorans 277 1 0 species 234 Geoglobus ahangari 113653 0 species 1 genus 0 4 2233 630 Archaeoglobus veneficus 209 58290 1 0 species 32 Archaeoglobus profundus 84156 0 species 1 2234 123 Archaeoglobus fulgidus species 0 1 266 Archaeoglobus sulfaticallidus 1316941 species 0 1 1 0 genus 124 54260 54261 124 Ferroglobus placidus 0 species 1 clade 0 110 27757 2290931 224756 1 Methanomicrobia 16201 26 49 class 0 11677 Methanosarcinales 1 94695 0 order 21 28 0 family 4 1 1 143067 559 Methanosaetaceae 558 Methanothrix 1 2222 genus 0 3 1 301375 Methanosaeta harundinacea 280 1 species 0 Methanothrix soehngenii 277 2223 1 0 species 23 1 0 family Methanosarcinaceae 11097 2206 1 genus 0 1 2321 684 0 species 1 684 Methanohalobium evestigatum 2322 genus 0 2 809 2225 438 Methanococcoides methylutens 2226 species 0 1 29291 371 Methanococcoides burtonii 0 species 1 101191 429 genus 0 1 species 0 1 101192 429 Methanomethylovorans hollandica genus 0 1 196136 407 Methanosalsum zhilinae 407 39669 1 species 0 genus 0 13 15 1 2207 7632 Methanosarcina 1834 2644672 0 no rank 4 1434103 Methanosarcina sp. WWM596 415 1 0 species Methanosarcina sp. WH1 310 1434102 1 species 0 1434100 439 Methanosarcina sp. MTP4 0 species 1 species 0 1 1434099 670 Methanosarcina sp. Kolksee Methanosarcina mazei 681 2209 1 species 0 2210 379 Methanosarcina thermophila species 0 1 0 species 1 418008 500 Methanosarcina horonobensis 2215 Methanosarcina vacuolata 567 1 0 species Methanosarcina siciliae 761 38027 1 species 0 1 species 0 2214 Methanosarcina acetivorans 536 1 0 species Methanosarcina barkeri 1976 2208 170861 383 Methanosarcina lacustris 0 species 1 2 0 genus 762 2175 1 0 species Methanohalophilus mahii 394 2176 1 species 0 2177 Methanohalophilus halophilus 368 0 genus 2 1 1 2220 373 Methanolobus 372 Methanolobus psychrophilus 420950 species 0 1 15 9 order 0 Methanomicrobiales 3746 2191 1 1 1198451 1279 Methanoregulaceae family 0 11 6 395331 1 Methanoregula 811 26 3 genus 0 1 0 species 882104 Methanoregula formicica 372 413 Methanoregula boonei 358766 species 0 1 Methanosphaerula 457 475087 1 9 2 genus 0 475088 448 Methanosphaerula palustris species 0 1 411 196137 0 family 1 411 2202 1 0 genus 411 Methanospirillum hungatei 2203 0 species 1 0 family 1 579 88404 579 2192 1 genus 0 1 species 0 Methanocorpusculum labreanum 579 83984 21 6 0 family Methanomicrobiaceae 1468 2194 1 0 genus 4 73 1 45989 1179 Methanoculleus 1 0 species 83986 Methanoculleus bourgensis 579 2619537 287 1 0 no rank 1 species 0 86622 Methanoculleus sp. MAB1 287 240 Methanoculleus marisnigri 2198 species 0 1 268 230355 1 0 genus Methanolacinia petrolearia 268 54120 1 species 0 570264 1 Methanocellales 752 7 5 order 0 2 4 family 0 570265 1 Methanocellaceae 745 570266 1 Methanocella 743 3 1 0 genus 198 Methanocella conradii 1175444 species 0 1 Methanocella arvoryzae 544 1175445 1 0 species 81 61 0 class 183963 1 Halobacteria 11556 Haloferacales 3518 1644055 1 18 59 order 0 0 family 8 10 2035 Haloferacaceae 1 1644056 1 60846 231 Halogeometricum 0 genus 2 2 1 species 0 60847 Halogeometricum borinquense 229 genus 0 1 293431 313 293091 Haloquadratum walsbyi 313 1 species 0 1481 Haloferax 1 2251 0 genus 4 36 Haloferax volcanii 454 2246 1 0 species Haloferax mediterranei 495 2252 1 0 species 35746 496 Haloferax gibbonsii 0 species 1 1963271 1 Halorubraceae 1229 8 3 family 0 8 2 0 genus Halopenitus 185 1209988 1 species 0 1 1048396 177 Halopenitus persicus 24 2 genus 0 Salinigranum 480 1644057 1 755307 456 Salinigranum rubrum species 0 1 0 genus 3 32 561 Halorubrum 1 56688 29284 Halorubrum trapanicum 243 1 species 0 Halorubrum lacusprofundi 286 2247 1 0 species 0 no rank 1 2678336 195 756883 195 halophilic archaeon DL31 0 species 1 2235 1 Halobacteriales 4752 91 26 0 order 1 1963268 3160 Haloarculaceae family 0 15 59 1 63743 384 Natronomonas genus 0 2 3 2257 197 Natronomonas pharaonis species 0 1 416273 185 Natronomonas moolapensis 0 species 1 51 5 genus 0 Haloarcula 1295 2237 1 species 0 1 202 Haloarcula taiwanensis 1932004 2238 440 Haloarcula marismortui 0 species 1 species 0 1 51589 273 Haloarcula hispanica 1 no rank 0 329 2624677 species 0 1 1592728 329 Haloarcula sp. CBA1115 602 146825 genus 0 2 0 species 1 146826 393 Halorhabdus utahensis 0 species 1 209 Halorhabdus tiamatea 430914 genus 0 2 16 405 Halorientalis 1 1073987 1 0 no rank 389 2648975 389 Halorientalis sp. IM1011 1932360 0 species 1 203135 1 Halomicrobium 415 1 2 0 genus 1 0 species 57705 Halomicrobium mukohataei 414 2 10 0 family Halobacteriaceae 1501 2236 1 211 1980514 1 0 genus 1 species 0 1873524 Halodesulfurarchaeum formicicum 211 genus 0 16 2 374 Halalkalicoccus 1 332246 Halalkalicoccus jeotgali 358 413810 1 species 0 1656823 1 Halanaeroarchaeum 96 4 2 0 genus Halanaeroarchaeum sulfurireducens 92 1604004 1 0 species 2239 1 Halobacterium 818 4 6 0 genus 0 no rank 1 258 2668073 1 species 0 751944 Halobacterium sp. DL1 258 Halobacterium salinarum 261 2242 1 species 0 1407499 Halobacterium hubeiense 293 1 species 0 Natrialbales 3205 1644060 1 18 16 0 order 78 15 family 0 Natrialbaceae 3187 1644061 1 203193 1 Halobiforma 401 1 2 0 genus 0 species 1 400 Halobiforma lacisalsi 229731 353799 174 genus 0 1 1 species 0 Halostagnicola larsenii 174 353800 83 2256 genus 0 1 1 species 0 Natronobacterium gregoryi 83 44930 genus 0 1 384 387342 387343 384 Halopiger xanaduensis species 0 1 88723 549 2 genus 0 69525 307 Natrinema pellirubrum 0 species 1 242 2622230 1 0 no rank 1 0 species Natrinema sp. J7-2 242 406552 0 genus 1 356 29287 Natronococcus occultus 356 29288 1 species 0 3 1 0 genus 121871 1 Haloterrigena 581 0 species 1 343 Haloterrigena turkmenica 62320 1 species 0 588898 Haloterrigena daqingensis 237 1269201 1 Salinarchaeum 383 1 2 0 genus 2621923 382 0 no rank 1 1 species 0 Salinarchaeum sp. Harcht-Bsk1 382 1333523 198 63742 0 genus 1 0 species 1 13769 198 Natrialba magadii 2283796 4231 clade 0 19 0 clade 2 371 1803510 371 379546 2 genus 0 1 0 species 379547 Aciduliprofundum boonei 288 no rank 0 1 2633939 83 83 Aciduliprofundum sp. MAR08-339 673860 0 species 1 3860 Thermoplasmata 1 183967 0 class 17 12 1234666 599 0 no rank 1 599 methanogenic archaeon ISO4-H5 1495144 species 0 1 Thermoplasmatales 1829 2301 1 17 9 order 0 223 46630 0 family 1 genus 0 1 223 46631 0 species 1 82076 223 Picrophilus torridus 1919231 586 no rank 0 1 1 species 0 1054217 Thermoplasmatales archaeon BRNA1 586 199 1747776 family 0 1 199 1747777 1 0 genus 199 Cuniculiplasma divulgatum 1673428 species 0 1 0 family 2 90142 558 74968 558 2 genus 0 species 0 1 236 Ferroplasma acidiphilum 74969 1 0 species 97393 Ferroplasma acidarmanus 322 246 46659 3 0 family 2302 1 Thermoplasma 246 1 3 0 genus 1 0 species Thermoplasma acidophilum 90 2303 155 Thermoplasma volcanium 50339 species 0 1 1235850 1 Methanomassiliicoccales 1420 6 2 order 0 family 0 4 3 1 1577788 989 Methanomassiliicoccaceae 1 0 genus 1080709 807 1406512 807 Candidatus Methanomassiliicoccus intestinalis 0 species 1 genus 0 1 1607807 178 1 species 0 1577791 Candidatus Methanoplasma termitum 178 2 0 family 429 2517203 17 2 genus 0 1291539 1 Candidatus Methanomethylophilus 429 1291540 Candidatus Methanomethylophilus alvus 412 1 0 species 50 clade 0 1783275 6692 11 phylum 0 2287 651137 7 4 order 0 Nitrosopumilales 1119 31932 1 338190 1112 3 family 0 338191 774 0 genus 2 0 species 1 348 Candidatus Nitrosopumilus adriaticus 1580092 1229909 Candidatus Nitrosopumilus sediminis 426 1 species 0 1993653 338 1 genus 0 1898749 338 Candidatus Nitrosomarinus catalina 0 species 1 4 class 0 580 1643678 1033996 1 Nitrososphaerales 241 1 3 0 order 2 family 0 1033997 240 1 497726 240 Nitrososphaera genus 0 1 2 1 0 species Nitrososphaera viennensis 239 1034015 0 order 1 1968909 339 339 1968910 family 0 1 1 genus 0 498374 339 1 0 species Candidatus Nitrosocaldus islandicus 339 2045011 651142 588 3 no rank 0 1593364 241 1 0 genus 1 species 0 1410606 Candidatus Nitrosopelagicus brevis 241 347 1825023 2 0 genus species 0 1 1846278 177 Candidatus Nitrosotenuis sp. AQ6f 1603555 Candidatus Nitrosotenuis cloacae 170 1 species 0 87 51967 phylum 0 1 1 genus 0 87 498845 1 species 0 Candidatus Korarchaeum cryptofilum 87 498846 28889 4318 0 phylum 38 0 class 4 38 1 183924 4318 Thermoprotei 449 871006 order 0 2 family 0 1 871007 93 1 genus 0 93 105850 242703 93 Acidilobus saccharovorans species 0 1 356 255472 family 0 1 356 200414 1 genus 0 species 0 1 356 Caldisphaera lagunensis 200415 10 3 0 order 2281 1 Sulfolobales 2018 118883 2015 family 0 9 2100760 243 1 genus 0 Sulfolobus solfataricus 243 2287 1 species 0 0 genus 1 69655 331 0 species 1 331 Sulfolobus tokodaii 111955 genus 0 4 1 806 Sulfolobus 1 2284 1 0 species Sulfolobus islandicus 491 43080 Sulfolobus acidocaldarius 196 2285 1 0 species 0 no rank 1 118 2641160 species 0 1 118 Sulfolobus sp. A20 1891280 12914 369 1 genus 0 369 Acidianus hospitalis 563177 species 0 1 2 0 genus 266 41980 40 Metallosphaera sedula 43687 0 species 1 species 0 1 1006005 226 Metallosphaera cuprina 836 Desulfurococcales 1 114380 order 0 12 1 2307 90 0 family 3 20 54251 0 genus 1 0 species 1 54252 20 Pyrolobus fumarii 0 genus 1 54247 45 45 Hyperthermus butylicus 54248 0 species 1 1 genus 0 2308 25 Pyrodictium delaneyi 25 1273541 1 0 species 2272 745 8 0 family genus 0 2 113 2273 1 0 species 2275 Desulfurococcus mucosus 36 1 0 species Desulfurococcus amylolyticus 77 94694 genus 0 2 54258 159 1 species 0 Ignicoccus islandicus 111 54259 Ignicoccus hospitalis 48 160233 1 0 species 477695 63 0 genus 1 0 species 1 1200300 63 Thermogladius calderae 391 2279 2 genus 0 1 species 0 Staphylothermus hellenicus 208 84599 1 0 species 2280 Staphylothermus marinus 183 1 genus 0 54253 19 species 0 1 19 Thermosphaera aggregans 54254 1 2266 1011 Thermoproteales order 0 13 1 4 0 family 383 114378 2268 383 0 genus 4 0 species 1 100 Thermofilum carboxyditrophus 1483572 1 species 0 1365176 Thermofilum adornatus 91 0 species 1 86 Thermofilum uzonense 1550241 1 0 species 2269 Thermofilum pendens 106 1 2267 627 Thermoproteaceae family 0 8 2 70 2276 genus 0 1 2277 70 Pyrobaculum islandicum species 0 1 1 0 genus 228 76886 Caldivirga maquilingensis 228 76887 1 species 0 2 3 genus 0 164450 1 Vulcanisaeta 204 1 0 species Vulcanisaeta moutnovskia 115 985052 1 0 species 164451 Vulcanisaeta distributa 87 2 genus 0 123 2270 1 species 0 Thermoproteus uzoniensis 99 184117 Thermoproteus tenax 24 2271 1 0 species 1783276 93 1 0 clade 1801631 93 0 phylum 1 genus 0 1 93 2490204 93 Candidatus Micrarchaeota archaeon Mia14 1920749 species 0 1 32028189 Bacteria 1 2 0 superkingdom 4397 130 40117 3731 0 phylum 14 3731 Nitrospira 1 203693 class 0 14 18 39 13 order 0 Nitrospirales 3713 189778 1 12 14 0 family 189779 1 Nitrospiraceae 3674 179 1 Leptospirillum 809 6 4 genus 0 350 655606 0 species group 1 1 0 species 180 Leptospirillum ferrooxidans 350 271 261386 0 species group 1 1 0 species 178606 Leptospirillum ferriphilum 271 1 0 species group 182 261385 species 0 1 182 Leptospirillum sp. Group II 'CF-1' 1660083 5 2 genus 0 Nitrospira 1796 1234 1 species 0 1 366 Nitrospira japonica 1325564 1 0 species 330214 Nitrospira defluvii 446 1 species 0 1715989 Candidatus Nitrospira inopinata 371 42253 Nitrospira moscoviensis 611 1 species 0 Thermodesulfovibrio 1055 28261 1 2 2 genus 0 1053 Thermodesulfovibrio yellowstonii 28262 species 0 1 66640 203691 phylum 0 58 class 0 196 58 66640 Spirochaetia 1 203692 1478 41 order 0 136 1 Spirochaetales 47978 39265 Spirochaetaceae 1 137 0 family 615 23 1 399320 4228 Sphaerochaeta 0 genus 3 4 273376 Sphaerochaeta coccoides 1428 1 species 0 1131707 Sphaerochaeta pleomorpha 1160 1 species 0 1131703 1637 Sphaerochaeta globosa 0 species 1 1 1616789 866 Salinispira genus 0 2 1 1307761 865 Salinispira pacifica species 0 1 2 3 0 genus Spirochaeta 1926 146 1 1 0 species Spirochaeta africana 1087 46355 Spirochaeta thermophila 837 154 1 0 species genus 0 755 12 30597 Treponema 1 157 0 species 1 160 123 Treponema pallidum 1 species 0 167 Treponema succinifaciens 5813 409322 Treponema pedis 703 1 0 species 81028 2015 Treponema brennaborense 0 species 1 Treponema azotonutricium 992 150829 1 0 species 221027 7472 Treponema putidum 0 species 1 1268 Treponema primitia 88058 0 species 1 53435 103 Treponema paraluiscuniculi species 0 1 2638727 6240 1 0 no rank 1 0 species 1539298 Treponema sp. OMZ 838 6240 158 4255 Treponema denticola species 0 1 858 Treponema caldarium 215591 0 species 1 1911556 1033 1 0 genus 1 species 0 55206 Sediminispirochaeta smaragdinae 1033 1643685 1 Borreliaceae 7235 17 2 family 0 genus 0 295 8 1 64895 3822 Borreliella Borreliella burgdorferi 384 139 1 0 species 463 Borreliella bavariensis 664662 0 species 1 Borreliella valaisiana 424 62088 1 0 species 0 species 1 29519 1044 Borreliella garinii 1 species 0 64897 Borreliella bissettii 267 29518 Borreliella afzelii 493 1 species 0 1674146 Borrelia mayonii 452 1 0 species 14 8 0 genus 138 1 Borrelia 3411 394 Borrelia hermsii 140 0 species 1 species 0 1 142 439 Borrelia turicatae 143 Borrelia anserina 373 1 0 species 349 Borrelia parkeri 141 0 species 1 1 species 0 Borrelia recurrentis 483 44449 species 0 1 544 Borrelia duttonii 40834 0 species 1 815 Borrelia miyamotoi 47466 9 0 order 1643688 3792 1 170 3792 Leptospiraceae 0 family 9 3 171 1 Leptospira 3442 6 12 genus 0 Leptospira alstonii 617 28452 1 0 species 28183 535 Leptospira santarosai species 0 1 1 species 0 Leptospira borgpetersenii 633 174 173 1165 Leptospira interrogans 0 species 1 1 species 0 Leptospira biflexa 480 172 Turneriella 347 338321 1 2 1 genus 0 species 0 1 346 Turneriella parva 29510 7 21 order 0 1643686 1 Brachyspirales 14674 782 6 0 family 143786 1 Brachyspiraceae 14653 29521 1 Brachyspira 13871 591 5 0 genus 0 species 1 52584 5595 Brachyspira pilosicoli 1 0 species Brachyspira murdochii 1813 84378 2509 Brachyspira intermedia 84377 0 species 1 1 species 0 Brachyspira hyodysenteriae 3363 159 1930617 945 3 phylum 0 1962850 945 3 class 0 945 Calditrichales 1 1962852 order 0 3 1 1962854 944 0 family 2 0 genus 2 1 1 187144 944 Caldithrix 1 species 0 Caldithrix abyssi 943 187145 1783270 3872615 359 0 clade clade 0 344 68336 3867722 0 phylum 31 319 1 976 3855390 Bacteroidetes 1 200643 3677660 Bacteroidia 0 class 86 66 2 7 0 order Marinilabiliales 4108 1970189 1 family 0 18 2 1 1471398 1161 Prolixibacteraceae 1143 1471399 genus 0 1 1 0 species 1168034 Draconibacterium orientale 1143 family 0 1 1970190 805 genus 0 1 1970191 805 1307839 805 Salinivirga cyanobacteriivorans species 0 1 0 family 2 7 1 1573805 1433 Marinifilaceae 0 genus 1 2060722 1426 1 0 species 1717717 Marinifilaceae bacterium SPP2 1426 1 0 family 558415 707 0 genus 1 707 1193324 1 species 0 889453 Alkalitalea saponilacus 707 order 0 617 58 1 171549 3673466 Bacteroidales 185291 598 no rank 0 1 1 species 0 Bacteroidales bacterium CF 598 1400053 1 2005520 3934 Dysgonamonadaceae 0 family 5 1 genus 0 2 29 1 294702 1364 Proteiniphilum 0 species 1 1642647 1335 Proteiniphilum saccharofermentans 1011 307628 1 0 genus species 0 1 1011 Petrimonas mucosa 1642646 1558 1784836 1 0 genus 1 0 species 1562970 Fermentimonas caenicola 1558 Porphyromonadaceae 3392 171551 1 18 4 0 family 1 836 3374 Porphyromonas genus 0 3 31 0 species 1 993 Porphyromonas asaccharolytica 28123 2350 Porphyromonas gingivalis 837 0 species 1 27 11 0 family 171552 1 Prevotellaceae 78726 0 genus 144 10 1 838 78699 Prevotella 3133 Prevotella dentalis 52227 0 species 1 0 species 1 61451 Prevotella intermedia 28131 1 0 species 28129 Prevotella denticola 1989 28132 Prevotella melaninogenica 2686 1 0 species Prevotella enoeca 970 76123 1 species 0 1 0 species 839 Prevotella ruminicola 2884 1305 2638335 1 no rank 0 652716 1305 Prevotella sp. oral taxon 299 0 species 1 1177574 Prevotella jejuni 1805 1 0 species 0 species 1 589436 2332 Prevotella fusca 37267 Barnesiellaceae 1 2005519 0 family 3 6 genus 0 2 95 1 397864 37261 Barnesiella 1 0 species 397865 Barnesiella viscericola 37166 171550 1 Rikenellaceae 23202 5 18 family 0 Mucinivorans 736 1611681 1 26 2 0 genus 710 Mucinivorans hirudinis 1433126 0 species 1 2 34 genus 0 Alistipes 22448 239759 1 214856 22414 Alistipes finegoldii species 0 1 0 family 26 11 1 815 597687 Bacteroidaceae 816 1 Bacteroides 597661 10 20924 genus 0 0 species 1 28116 67165 Bacteroides ovatus 28119 Bacteroides zoogleoformans 35290 1 0 species 0 species 1 19071 Bacteroides heparinolyticus 28113 818 Bacteroides thetaiotaomicron 40481 1 species 0 species 0 1 47678 49950 Bacteroides caccae 246787 Bacteroides cellulosilyticus 48061 1 0 species 0 species 1 65957 Bacteroides caecimuris 1796613 Bacteroides fragilis 219765 817 1 species 0 Bacteroides helcogenes 30997 290053 1 species 0 1 2005523 964 Paludibacteraceae family 0 3 10 346096 1 Paludibacter 954 1 2 0 genus species 0 1 953 Paludibacter propionicigenes 185300 3 3 0 family Odoribacteraceae 19856 1853231 1 283168 1 Odoribacter 19853 2 1 0 genus 0 species 1 19852 Odoribacter splanchnicus 28118 7 125 family 0 Tannerellaceae 183359 2005525 1 genus 0 3 12 26636 Tannerella 1 195950 1616 2620507 1 0 no rank 1616 Tannerella sp. oral taxon HOT-286 712710 species 0 1 25008 Tannerella forsythia 28112 0 species 1 1 375288 156598 Parabacteroides 0 genus 3 49 0 no rank 1 108559 2649774 2025876 108559 Parabacteroides sp. CT06 0 species 1 47990 Parabacteroides distasonis 823 species 0 1 333046 2723864 0 no rank 4 894 511434 genus 0 1 species 0 1 511435 894 Candidatus Azobacteroides pseudotrichonymphae 3 genus 0 909656 2722970 1 species 0 Bacteroides dorei 433451 357276 821 Bacteroides vulgatus 2271845 1 species 0 1 species 0 376805 Bacteroides salanitronis 17674 115313 Flavobacteriia 1 117743 class 0 144 101 115212 Flavobacteriales 1 200644 0 order 143 150 0 family 10 3 2481 Blattabacteriaceae 1 39782 Blattabacterium 2478 34098 1 9 29 0 genus 370 Blattabacterium punctulatus 164514 0 species 1 0 no rank 6 2647581 1703 367806 Blattabacterium sp. (Blatta orientalis) 185 1 0 species 0 species 1 285 Blattabacterium sp. (Periplaneta americana) 367488 Blattabacterium sp. (Blaberus giganteus) 322 1186051 1 species 0 Blattabacterium sp. (Nauphoeta cinerea) 297 1316444 1 0 species 323 Blattabacterium sp. (Mastotermes darwiniensis) 39768 species 0 1 291 Blattabacterium sp. (Blattella germanica) 624186 species 0 1 species 0 1 1653831 376 Blattabacterium cuenoti 2 3 family 0 1853230 1 Crocinitomicaceae 874 1 332102 872 Fluviicola genus 0 2 9 863 Fluviicola taffensis 191579 0 species 1 49546 1 Flavobacteriaceae 78443 634 102 0 family 15 26 genus 0 Capnocytophaga 8491 1016 1 0 species 1 646 Capnocytophaga stomatis 1848904 species 0 1 607 Capnocytophaga cynodegmi 28189 1019 Capnocytophaga sputigena 1016 1 0 species 28188 993 Capnocytophaga canimorsus 0 species 1 Capnocytophaga leadbetteri 537 327575 1 0 species 6 0 no rank 3080 2640652 1316596 596 Capnocytophaga sp. oral taxon 878 0 species 1 species 0 1 209053 654 Capnocytophaga sp. ChDC OS43 430 Capnocytophaga sp. H4358 1945658 0 species 1 1 species 0 Capnocytophaga sp. oral taxon 323 493 1705617 species 0 1 1945657 492 Capnocytophaga sp. H2931 0 species 1 1316593 415 Capnocytophaga sp. oral taxon 864 species 0 1 633 Capnocytophaga gingivalis 1017 648 Capnocytophaga ochracea 1018 0 species 1 305 Capnocytophaga haemolytica 45243 0 species 1 1649495 984 1 0 genus 1 no rank 0 2622645 984 Seonamhaeicola sp. S2-3 984 1936081 1 species 0 genus 0 4 3 1 291183 3096 Lacinutrix 0 species 1 1075 Lacinutrix venerupis 1486034 2647285 2018 2 no rank 0 1 species 0 983544 Lacinutrix sp. 5H-3-7-4 973 Lacinutrix sp. Bg11-31 1045 2057808 1 0 species 1 252306 604 Robiginitalea genus 0 2 4 252307 600 Robiginitalea biformata species 0 1 6291 Polaribacter 1 52959 genus 0 6 17 996801 Polaribacter reichenbachii 1706 1 species 0 no rank 0 3 3281 196858 1259 Polaribacter sp. ALD11 2058137 0 species 1 species 0 1 1095 Polaribacter sp. MED152 313598 1 0 species Polaribacter sp. BM10 927 1529069 1 0 species Polaribacter vadi 1287 1774273 Myroides 5101 76831 1 5 68 genus 0 480520 1063 Myroides profundi species 0 1 1 0 species 76832 Myroides odoratimimus 1664 2642485 2306 2 0 no rank 1 0 species 1583100 Myroides sp. A21 1181 1458492 1125 Myroides sp. ZB35 0 species 1 1116 Salegentibacter 1 143222 0 genus 4 2 2633436 1112 1 0 no rank 0 species 1 1112 Salegentibacter sp. T436 1729720 5 4 genus 0 363408 1 Nonlabens 2795 Nonlabens sediminis 686 319236 1 species 0 no rank 0 2 1481 2615035 0 species 1 756 Nonlabens sp. MB-3u-79 2058134 1476901 725 Nonlabens sp. MIC269 0 species 1 328515 Nonlabens dokdonensis 624 1 species 0 1 genus 0 83612 575 Psychroflexus torquis 575 57029 1 0 species 1 2 genus 0 112040 1 Zobellia 859 species 0 1 63186 858 Zobellia galactanivorans 3094 Gramella 1 292691 genus 0 1 5 species 0 1 725 Gramella sp. SH35 2126553 411153 Gramella forsetii 860 1 species 0 1 0 species Gramella flava 790 1486245 1 species 0 1913577 Gramella sp. LPB0144 718 237 1 Flavobacterium 11474 9 30 genus 0 1 species 0 1763534 Flavobacterium crassostreae 1042 species 0 1 972 Flavobacterium commune 1306519 896 Flavobacterium indicum 312277 0 species 1 1 species 0 Flavobacterium psychrophilum 1369 96345 Flavobacterium johnsoniae 3547 986 1 species 0 1 0 species Flavobacterium branchiophilum 761 55197 species 0 1 1014 Flavobacterium gilvum 1492737 1 0 species 996 Flavobacterium columnare 1843 Dokdonia 2329 326319 1 15 4 genus 0 2 no rank 0 1397 2615033 0 species 1 983548 818 Dokdonia sp. 4H-3-7-5 species 0 1 313590 579 Dokdonia sp. MED134 1 0 species 326320 Dokdonia donghaensis 917 1 genus 0 1518147 1116 0 species 1 1790137 1116 Wenyingzhuangia fucanilytica 2 0 no rank 1843 61432 1 0 species 1150389 Flavobacteriaceae bacterium UJ101 1259 0 species 1 531844 584 Flavobacteriaceae bacterium 3519-10 1 417127 1274 Zunongwangia 0 genus 2 2 1 species 0 398743 Zunongwangia profunda 1272 genus 0 1 450 389486 450 2648869 0 no rank 1 Sediminicola sp. YIK13 450 1453352 1 0 species 4683 Maribacter 1 252356 0 genus 5 4 3 no rank 0 2615042 3480 species 0 1 754 Maribacter sp. HTCC2170 313603 1363 Maribacter sp. 1_2014MBL_MicDiv 1644130 0 species 1 1836467 1363 Maribacter sp. T28 0 species 1 Maribacter cobaltidurans 1199 1178778 1 0 species 704 216431 1 0 genus 0 species 1 313588 704 Croceibacter atlanticus 1186 261827 1 genus 0 species 0 1 1736674 1186 Algibacter alginicilyticus 646 178469 genus 0 1 0 species 1 646 Arenibacter algicola 616991 2 3 genus 0 Muricauda 827 111500 1 587 Muricauda ruestringensis 111501 species 0 1 1 species 0 Muricauda lutaonensis 238 516051 696 393005 1 0 genus species 0 1 696 Tamlana sp. UJ94 2069432 0 genus 2 4 1 153265 445 Aequorivita 441 Aequorivita sublithincola 101385 0 species 1 1 104264 4191 Cellulophaga genus 0 3 4 59600 Cellulophaga algicola 967 1 0 species 76594 Cellulophaga baltica 1063 1 0 species 979 Cellulophaga lytica 2158 1 species 0 1154 2700084 1 genus 0 1850246 1154 Lutibacter sp. LPB0138 species 0 1 1 3 genus 0 286104 1 Winogradskyella 1728 1727 2615021 0 no rank 2 species 0 1 754409 1049 Winogradskyella sp. PG-2 1 0 species Winogradskyella sp. J14-2 678 1936080 851 225842 2 genus 0 2644710 851 no rank 0 2 1 species 0 Formosa sp. Hel1_33_131 409 1336794 0 species 1 442 Formosa sp. Hel3_A1_48 1336795 genus 0 5 15 4568 Tenacibaculum 1 104267 1 species 0 Tenacibaculum dicentrarchi 1089 669041 Tenacibaculum todarodis 1186 1850252 1 0 species 0 species 1 631 Tenacibaculum maritimum 107401 0 species 1 584609 1647 Tenacibaculum jejuense 0 genus 1 1176327 533 2636237 533 0 no rank 1 2094025 Aureitalea sp. RR4-38 533 1 0 species 816 1209327 1 0 genus 1803846 Flavivirga eckloniae 816 1 0 species 1 0 genus 618 1204360 1 species 0 762954 Siansivirga zeaxanthinifaciens 618 0 genus 1 358023 1530 species 0 1 1530 Lutibacter profundi 1622118 336276 1141 genus 0 1 2615019 1141 1 no rank 0 1141 Olleya sp. Bg11-27 2058135 0 species 1 313602 573 no rank 0 2 1 genus 0 119 1940138 1415657 119 Candidatus Walczuchella monophlebidarum species 0 1 454 336809 1 0 genus 454 Candidatus Sulcia muelleri 336810 0 species 1 family 0 1 246874 1 Cryomorphaceae 2762318 31677 20 0 family 0 genus 1 34084 1483 1 0 species Riemerella anatipestifer 1483 34085 2782232 12099 10 0 no rank 1 59732 11271 Chryseobacterium genus 0 89 9 species 0 1 1685010 1282 Chryseobacterium glaciei 1 species 0 1265445 Chryseobacterium camelliae 883 1324352 Chryseobacterium gallinarum 1328 1 species 0 1 species 0 Chryseobacterium piperi 1154 558152 3 no rank 0 2593645 3682 0 species 1 1283 Chryseobacterium sp. T16E-39 2015076 0 species 1 878220 1319 Chryseobacterium sp. StRB126 1721091 1080 Chryseobacterium sp. IHB B 17019 0 species 1 2853 Chryseobacterium indologenes 253 0 species 1 2782228 828 genus 0 1 536441 Chryseobacterium taklimakanense 828 1 species 0 308865 1 Elizabethkingia 8458 6 74 0 genus species 0 1 1145 Elizabethkingia genomosp. 4 1756150 0 species 1 1117645 3184 Elizabethkingia anophelis 172045 1825 Elizabethkingia miricola species 0 1 1 species 0 Elizabethkingia meningoseptica 1327 238 1 0 species 1756149 Elizabethkingia genomosp. 3 903 genus 0 2 62 1 28250 9038 Ornithobacterium species 0 1 8976 Ornithobacterium rhinotracheale 28251 0 genus 1 1013 599 Weeksella virosa 599 1014 1 0 species 2 0 family 494 1333713 Owenweeksia 494 267986 1 2 9 0 genus Owenweeksia hongkongensis 485 253245 1 species 0 1 1755828 519 Ichthyobacteriaceae family 0 2 2 1755829 517 1 genus 0 species 0 1 517 Ichthyobacterium seriolicida 242600 1 768503 34276 Cytophagia 0 class 57 61 34215 Cytophagales 1 768507 0 order 207 56 0 family 16 35 1 1853232 14990 Hymenobacteraceae 1 89966 9781 Hymenobacter genus 0 8 123 1411621 Hymenobacter sedentarius 1815 1 0 species species 0 1 1467 Hymenobacter swuensis 1446467 5 no rank 0 6376 2615202 1 0 species Hymenobacter sp. DG25A 690 1385663 1356852 Hymenobacter sp. APR13 1626 1 0 species 1484118 Hymenobacter sp. PAMC 26628 1707 1 0 species 1 0 species Hymenobacter sp. DG25B 981 1385664 1 0 species Hymenobacter sp. PAMC 26554 1372 1484116 30 3 0 genus 323449 1 Pontibacter 2650 1 0 species Pontibacter akesuensis 1646 388950 1 species 0 Pontibacter korlensis 974 400092 10 4 0 genus 1379908 1 Rufibacter 2524 species 0 1 512763 696 Rufibacter tibetensis 0 no rank 2 2639626 1818 species 0 1 1040 Rufibacter sp. DG15C 1379909 1379910 Rufibacter sp. DG31D 778 1 species 0 89373 1 Cytophagaceae 7719 31 15 0 family 978 1 Cytophaga 1286 2 10 genus 0 species 0 1 1276 Cytophaga hutchinsonii 985 Dyadobacter 934 120831 1 2 1 0 genus 94254 Dyadobacter fermentans 933 1 0 species 3380 Spirosoma 1 107 genus 0 6 9 0 species 1 1211326 490 Spirosoma aerolatum 0 species 1 541 Spirosoma rigui 564064 1379870 Spirosoma radiotolerans 793 1 species 0 Spirosoma montaniterrae 709 1178516 1 0 species 1 0 species 2057025 Spirosoma sp. HA7 838 1 genus 0 105 985 0 species 1 106 985 Runella slithyformis 728 319458 1 genus 0 Leadbetterella byssophila 728 316068 1 species 0 375 Fibrella 1 861914 genus 0 2 1 374 2620963 1 no rank 0 1 0 species 1834519 Fibrella sp. ES10-3-2-2 374 0 family 4 2 1 1501348 685 Amoebophilaceae 1 genus 0 281119 413 1 0 species 281120 Candidatus Amoebophilus asiaticus 413 2 1 genus 0 Candidatus Cardinium 270 273135 1 269 2641185 0 no rank 1 species 0 1 269 Cardinium endosymbiont of Encarsia pergandiella 249402 12 3 family 0 1937968 1 Bernardetiaceae 1387 Bernardetia 1375 1937972 1 2 3 genus 0 1372 Bernardetia litoralis 999 species 0 1 1 3 0 family Persicobacteraceae 1436 1853234 1 59740 1 Persicobacter 1435 2 16 genus 0 2664020 1419 no rank 0 1 1085624 Persicobacter sp. JZB09 1419 1 0 species 1 200667 2894 Flammeovirgaceae 0 family 4 4 2 8 0 genus Flammeovirga 1962 59739 1 0 no rank 1 2637820 1954 Flammeovirga sp. MY04 1954 1191459 1 species 0 0 no rank 1 340671 928 1257021 928 Flammeovirgaceae bacterium 311 0 species 1 0 family 2 2762301 1065 7 2 0 genus Marivirga 1065 869806 1 Marivirga tractuosa 1058 1006 1 0 species 0 family 8 12 1 563798 3832 Cyclobacteriaceae 682 232244 1 genus 0 232259 Belliella baltica 682 1 species 0 1724 Cyclobacterium 1 68288 genus 0 3 3 320787 Cyclobacterium amurskyense 882 1 species 0 104 Cyclobacterium marinum 839 1 species 0 0 genus 1 246875 581 1 0 species 1727163 Algoriphagus sp. M8-2 581 2 2 0 genus 390846 1 Echinicola 833 species 0 1 390884 831 Echinicola vietnamensis class 0 26 14 7120 Chitinophagia 1 1853228 0 order 13 34 7094 Chitinophagales 1 1853229 7060 Chitinophagaceae 1 563835 family 0 12 45 1769012 515 genus 0 1 2636138 515 1 0 no rank species 0 1 1850526 515 Arachidicoccus sp. BS20 2 1 0 genus Flavisolibacter 663 398041 1 1 0 species 1492898 Flavisolibacter tropicus 662 1 354354 909 Niastella genus 0 2 3 354356 906 Niastella koreensis species 0 1 0 genus 2 379899 1991 0 species 1 958 Niabella ginsenosidivorans 1176587 Niabella soli 1033 446683 1 0 species 2 genus 0 2062 79328 0 species 1 612 Chitinophagaceae bacterium 13 2029983 1450 Chitinophaga pinensis 79329 species 0 1 649460 1 Filimonas 875 4 2 genus 0 1 species 0 Filimonas lacunae 871 477680 7 3 0 class 1937959 1 Saprospiria 1210 1207 Saprospirales 1 1936988 0 order 1 6 1937961 872 2 family 0 Haliscomenobacter 872 2349 1 2 4 0 genus 1 species 0 Haliscomenobacter hydrossis 868 2350 3 1 family 0 Saprospiraceae 334 89374 1 2 3 genus 0 1007 1 Saprospira 333 Saprospira grandis 330 1008 1 0 species 0 class 23 12 1 117747 15582 Sphingobacteriia 1 200666 15570 Sphingobacteriales 0 order 22 23 21 52 family 0 84566 1 Sphingobacteriaceae 15547 Pedobacter 5164 84567 1 11 6 genus 0 430522 Pedobacter steynii 1024 1 species 0 Pedobacter heparinus 719 984 1 species 0 0 species 1 1500 Pedobacter cryoconitis 188932 1 no rank 0 842 2628915 Pedobacter sp. PACM 27299 842 1727164 1 0 species 363852 1068 Pedobacter ginsengisoli species 0 1 genus 0 6 12 4746 Sphingobacterium 1 28453 4 0 no rank 4020 2609468 969 Sphingobacterium sp. B29 1933220 species 0 1 Sphingobacterium sp. ML3W 1145 1538644 1 species 0 2003121 Sphingobacterium sp. G1-14 1020 1 0 species 1 species 0 743722 Sphingobacterium sp. 21 886 species 0 1 1010 714 Sphingobacterium mizutaii 0 genus 3 2 1316 Pseudopedobacter 1 1649482 1313 Pseudopedobacter saltans 151895 species 0 1 no rank 0 1 84568 844 1986952 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 844 1 species 0 Mucilaginibacter 2161 423349 1 10 4 genus 0 1 0 species Mucilaginibacter gotjawali 826 1550579 species 0 1 1234841 593 Mucilaginibacter sp. BJC16-A31 0 no rank 1 732 2617802 1 0 species 1300914 Mucilaginibacter sp. PAMC 26640 732 1 0 genus 1264 929509 Solitalea canadensis 1264 995 1 0 species 1 1100069 4198 Bacteroidetes Order II. Incertae sedis order 0 67 7 4131 Rhodothermaceae 1 563843 0 family 6 29 0 no rank 1 1468 1196022 1468 Rhodothermaceae bacterium RA 1779382 species 0 1 4 2 0 genus Salinibacter 798 146918 1 Salinibacter ruber 794 146919 1 0 species 2 2 genus 0 29548 1 Rhodothermus 1836 species 0 1 1834 Rhodothermus marinus 29549 0 phylum 22 10575 1090 10575 Chlorobia 1 191410 class 0 44 22 1 191411 10531 Chlorobiales 0 order 21 87 0 family 20 54 10444 Chlorobiaceae 1 191412 genus 0 2 2 550 Chloroherpeton 1 100715 1 0 species 100716 Chloroherpeton thalassium 548 1 256319 3479 Chlorobaculum 0 genus 4 20 1 species 0 1097 Chlorobaculum tepidum 813 Chlorobaculum parvum 1249 274539 1 species 0 274537 1397 Chlorobaculum limnaeum 0 species 1 8 no rank 0 4456 274493 0 genus 6 5 2992 Chlorobium 1 1091 1094 Chlorobium phaeovibrioides 524 1 species 0 1 0 species Chlorobium chlorochromatii 348 337090 1096 1110 Chlorobium phaeobacteroides species 0 1 1 0 species Chlorobium limicola 1004 1092 genus 0 3 10 1464 Pelodictyon 1 1099 species 0 1 1100 866 Pelodictyon luteolum 1 0 species 34090 Pelodictyon phaeoclathratiforme 588 0 genus 2 5 1905 Prosthecochloris 1 1101 1330 2632826 no rank 0 3 0 species 1 281093 437 Prosthecochloris sp. GSB1 370 Prosthecochloris sp. CIB 2401 1868325 species 0 1 Prosthecochloris sp. HL-130-GSB 523 1974213 1 0 species 573 Prosthecochloris aestuarii 1102 0 species 1 1134404 1757 0 phylum 3 1757 Ignavibacteria 1 795747 0 class 3 1 1756 795748 2 order 0 family 0 1 795749 1187 1187 795750 genus 0 1 0 species 1 1187 Ignavibacterium album 591197 family 0 1 1334117 569 569 1134403 0 genus 1 0 species 1 569 Melioribacter roseus 1134405 0 phylum 8 2848 142182 Gemmatimonadetes 2848 219685 1 8 11 class 0 7 49 0 order Gemmatimonadales 2837 219686 1 2788 Gemmatimonadaceae 1 219687 family 0 6 29 173479 1 Gemmatimonas 1327 13 3 genus 0 species 0 1 641 Gemmatimonas phototrophica 1379270 0 species 1 173480 673 Gemmatimonas aurantiaca genus 0 2 8 1432 Gemmatirosa 1 1706036 1 species 0 861299 Gemmatirosa kalamazoonesis 1424 0 phylum 2 425 456828 2 2 genus 0 Candidatus Cloacimonas 425 456826 1 Candidatus Cloacimonas acidaminovorans 423 456827 1 0 species 0 phylum 5 65842 1620 204430 1 Fibrobacteria 1620 5 6 0 class Fibrobacterales 1614 218872 1 2 4 order 0 Fibrobacteraceae 1612 204431 1 4 3 0 family 2 3 0 genus 832 1 Fibrobacter 1608 1605 Fibrobacter succinogenes 833 0 species 1 32066 70979 23 0 phylum class 0 62 23 1 203490 70979 Fusobacteriia 1 203491 70917 Fusobacteriales order 0 165 22 9 97 family 0 Leptotrichiaceae 17931 1129771 1 2826 32068 1 0 genus 826 Sebaldella termitidis 2826 1 species 0 34104 2441 0 genus 1 2441 Streptobacillus moniliformis 34105 0 species 1 1 32067 9598 Leptotrichia genus 0 5 29 2633022 7406 3 no rank 0 1785996 Leptotrichia sp. oral taxon 847 2110 1 0 species 712357 Leptotrichia sp. oral taxon 212 3233 1 species 0 0 species 1 2063 Leptotrichia sp. oral taxon 498 712368 1 species 0 40542 Leptotrichia buccalis 2163 2969 168808 genus 0 1 1 species 0 187101 Sneathia amnii 2969 203492 1 Fusobacteriaceae 52821 12 55 0 family 50101 Fusobacterium 1 848 0 genus 9 151 1 0 species 849 Fusobacterium gonidiaformans 2302 species 0 1 4971 Fusobacterium hwasookii 1583098 species 0 1 851 16102 Fusobacterium nucleatum 861 Fusobacterium ulcerans 4974 1 species 0 859 Fusobacterium necrophorum 1342 1 species 0 9363 Fusobacterium periodonticum 860 0 species 1 850 4035 Fusobacterium mortiferum 0 species 1 0 species 1 856 6861 Fusobacterium varium 167639 1 Ilyobacter 2665 2 2 genus 0 0 species 1 2663 Ilyobacter polytropus 167642 0 phylum 4 68297 2242 203486 2242 class 0 4 203487 1 Dictyoglomales 2242 4 1 0 order 203488 2241 3 family 0 0 genus 1 3 2241 Dictyoglomus 1 13 1274 Dictyoglomus turgidum 513050 species 0 1 14 966 Dictyoglomus thermophilum 0 species 1 3 0 no rank 746 2323 1783234 746 3 0 clade 95901 629 clade 0 2 2497643 629 0 class 2 629 2497644 2 0 order 629 2497645 0 family 2 2 1 0 genus 1551504 1 Candidatus Babela 629 673862 Candidatus Babela massiliensis 628 1 species 0 117 95818 0 phylum 1 1 no rank 0 117 1895827 1 0 species 2056494 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 117 508458 6157 12 phylum 0 12 46 class 0 649775 1 Synergistia 6157 Synergistales 6111 649776 1 17 11 0 order 10 816 0 family 649777 1 Synergistaceae 6094 0 genus 2 7 668 Thermanaerovibrio 1 81461 81462 Thermanaerovibrio acidaminovorans 661 1 species 0 genus 0 1 2 416 Thermovirga 1 336260 0 species 1 415 Thermovirga lienii 336261 5 2 0 genus Cloacibacillus 3528 508459 1 1197717 3523 Cloacibacillus porcorum species 0 1 225 Acetomicrobium 1 49894 0 genus 1 2 224 Acetomicrobium mobile 97477 species 0 1 genus 0 1 81466 441 81468 441 Aminobacterium colombiense species 0 1 18005 200918 41 phylum 0 188708 1 Thermotogae 18005 34 41 class 0 17 6 0 order Petrotogales 4212 1643947 1 1643949 4195 family 0 5 1 0 genus 28236 712 1 0 species Petrotoga mobilis 712 69499 693 1511648 1 genus 0 1 0 species 1006576 Defluviitoga tunisiensis 693 Marinitoga 2790 160798 1 3 7 genus 0 2640159 1387 0 no rank 1 1545835 1387 Marinitoga sp. 1137 species 0 1 149715 1396 Marinitoga piezophila species 0 1 6 2 0 order 1643946 1 Kosmotogales 1427 1 5 0 family 1643948 1 Kosmotogaceae 1425 1184396 1 Mesotoga 512 2 1 genus 0 species 0 1 511 Mesotoga prima 1184387 0 genus 2 651456 912 1 0 species Kosmotoga pacifica 491 1330330 species 0 1 651457 421 Kosmotoga olearia 1 2419 12332 Thermotogales order 0 28 20 Fervidobacteriaceae 6029 1643950 1 10 6 0 family 1 2422 1974 Fervidobacterium genus 0 5 4 species 0 1 2423 461 Fervidobacterium islandicum species 0 1 767 Fervidobacterium pennivorans 93466 1 0 species 2424 Fervidobacterium nodosum 741 Thermosipho 4049 2420 1 5 12 0 genus 2421 1430 Thermosipho africanus species 0 1 species 0 1 842 Thermosipho melanesiensis 46541 1765 2676525 0 no rank 2 0 species 1 1462747 867 Thermosipho sp. 1063 1437364 Thermosipho sp. 1070 898 1 0 species Thermotogaceae 6283 188709 1 18 17 family 0 11 60 genus 0 Thermotoga 3902 2335 1 1508420 672 Thermotoga profunda species 0 1 330 Thermotoga petrophila 93929 species 0 1 1 0 species 1508419 Thermotoga caldifontis 401 1 species 0 Thermotoga naphthophila 338 93930 no rank 0 4 1404 2631113 species 0 1 126740 362 Thermotoga sp. RQ2 0 species 1 1157948 348 Thermotoga sp. 2812B 1 0 species 126738 Thermotoga sp. RQ7 283 0 species 1 411 Thermotoga sp. Cell2 1157947 Thermotoga neapolitana 284 2337 1 0 species species 0 1 2336 413 Thermotoga maritima 2363 Pseudothermotoga 1 1643951 0 genus 62 5 1 species 0 119394 Pseudothermotoga thermarum 443 691 Pseudothermotoga elfii 38322 species 0 1 species 0 1 177758 693 Pseudothermotoga lettingae 474 Pseudothermotoga hypogea 57487 0 species 1 0 phylum 2005 695 2142738 Proteobacteria 1 1224 Gammaproteobacteria 1273173 1236 1 1741 884 0 class 18 6 0 order Legionellales 9993 118969 1 Legionellaceae 7750 444 1 14 39 family 0 445 1 Legionella 7368 12 33 0 genus 449 Legionella hackeliae 616 1 species 0 0 species 1 28087 490 Legionella sainthelensi 0 species 1 45067 431 Legionella lansingensis 476 Legionella fallonii 96230 species 0 1 Legionella spiritensis 355 452 1 0 species 446 2882 Legionella pneumophila species 0 1 1 species 0 66969 Legionella waltersii 441 2005262 Legionella endosymbiont of Polyplax serrata 174 1 species 0 29423 390 Legionella oakridgensis 0 species 1 Legionella clemsonensis 439 1867846 1 0 species 641 Legionella longbeachae 450 0 species 1 1 0 genus 465 343 0 species 1 343 Tatlockia micdadei 451 118968 2237 3 0 family 2 0 genus 1989 776 no rank 0 1 235 2676648 1 0 species Coxiella endosymbiont of Amblyomma americanum 235 325775 777 Coxiella burnetii 1754 1 species 0 0 no rank 1 134284 248 1592897 248 Coxiella-like endosymbiont 0 species 1 Methylococcales 5077 135618 1 12 19 0 order 5058 Methylococcaceae 1 403 0 family 33 11 52 5 genus 0 Methylomonas 3023 416 1 1 species 0 1538553 Methylomonas denitrificans 441 0 species 1 421 422 Methylomonas methanica species 0 1 702114 880 Methylomonas koyamae 1 0 no rank 2608980 1228 1228 Methylomonas sp. DH-1 1727196 0 species 1 39773 487 1 genus 0 487 Methylomicrobium alcaliphilum 271065 0 species 1 genus 0 2 14 1084 Methylococcus 1 413 1 0 species 414 Methylococcus capsulatus 1070 0 genus 13 2 431 Methylovulum 1 762296 1704499 418 Methylovulum psychrotolerans 0 species 1 72273 1 Thiotrichales 18172 4 34 order 0 22 15 0 family 135616 1 Piscirickettsiaceae 3793 779 Methylophaga 1 40222 0 genus 3 3 1 species 0 Methylophaga frappieri 395 754477 754476 381 Methylophaga nitratireducenticrescens species 0 1 1237 1 Piscirickettsia 688 19 2 0 genus 0 species 1 1238 669 Piscirickettsia salmonis genus 0 4 3 1 34067 1158 Cycloclasticus 2 0 no rank 750 2621467 728003 393 Cycloclasticus sp. PY97N species 0 1 1 0 species 385025 Cycloclasticus sp. P1 357 species 0 1 405 Cycloclasticus zancles 1329899 Thiomicrospira 649 933 1 3 2 genus 0 92245 276 Thiomicrospira aerophila species 0 1 1 0 species Thiomicrospira cyclica 371 147268 28884 1 Hydrogenovibrio 497 2 8 genus 0 Hydrogenovibrio crunogenus 489 39765 1 0 species 1021 Thiotrichaceae 1 135617 family 0 4 4 0 genus 1 1021 566 Beggiatoa leptomitoformis 566 288004 1 species 0 genus 0 3 2 1 40751 451 Thioploca 1 0 species 40754 Thioploca ingrica 448 family 0 14 52 1 34064 13354 Francisellaceae 1 262 12824 Francisella 0 genus 12 145 573569 Francisella sp. TX077308 731 1 species 0 0 species 1 954 470 Francisella persica Francisella philomiragia 2521 28110 1 species 0 752 Francisella halioticida 549298 0 species 1 1658 Francisella noatunensis 657445 0 species 1 573570 Francisella sp. TX077310 1125 1 0 species 0 species 1 263 2498 Francisella tularensis 1 0 species Francisella sp. CA97-1460 868 1542390 Francisella hispaniensis 882 622488 1 species 0 1174 2610885 2 0 no rank species 0 1 1547445 526 Francisella sp. FSC1006 1 0 species Francisella sp. MA067296 648 475375 1869285 478 genus 0 1 1 0 species Allofrancisella guangzhouensis 478 594679 573 71 0 order Oceanospirillales 29497 135619 1 28256 1 Halomonadaceae 17063 219 32 0 family 363 114403 0 no rank 5 114185 27 genus 0 1 114186 27 Candidatus Carsonella ruddii 0 species 1 2 2 0 genus 235572 1 Candidatus Portiera 131 Candidatus Portiera aleyrodidarum 129 91844 1 0 species 1495768 1 Candidatus Evansia 205 2 1 0 genus 1 0 species Candidatus Evansia muelleri 204 1495769 0 genus 5 2 451 Chromohalobacter 1 42054 species 0 1 158080 446 Chromohalobacter salexigens 2 24 genus 0 376488 1 Halotalea 718 0 species 1 376489 694 Halotalea alkalilenta 1 404432 905 Salinicola 0 genus 23 2 Salinicola tamaricis 882 1771309 1 0 species 2 8 genus 0 Cobetia 1212 204286 1 28258 Cobetia marina 1204 1 species 0 Kushneria 2165 504090 1 18 3 genus 0 1 species 0 Kushneria konosiri 1169 698828 Kushneria marisflavi 978 157779 1 species 0 15 239 0 genus Halomonas 11030 2745 1 species 0 1 802 Halomonas hydrothermalis 115561 2609666 5426 0 no rank 8 1962264 Halomonas sp. 'Soap Lake #7' 535 1 0 species 1 species 0 1118153 Halomonas sp. GFAJ-1 310 1 species 0 1504981 Halomonas sp. KO116 485 2136172 Halomonas sp. SF2003 935 1 0 species 0 species 1 489 Halomonas sp. GT 1971364 1610576 Halomonas sp. R57-5 728 1 species 0 species 0 1 535 Halomonas sp. 'Soap Lake #6' 1949203 1883416 Halomonas sp. 1513 1409 1 0 species 1 0 species 1897729 Halomonas aestuarii 1178 0 species 1 213554 292 Halomonas campaniensis 867 Halomonas chromatireducens 507626 0 species 1 species 0 1 1178482 1005 Halomonas huangheensis species 0 1 475662 1221 Halomonas beimenensis Oceanospirillaceae 3889 135620 1 12 43 family 0 8 4 0 genus Marinomonas 1571 28253 1 species 0 1 450 Marinomonas posidonica 936476 no rank 0 1 539 196814 Marinomonas sp. MWYL1 539 400668 1 species 0 119864 574 Marinomonas mediterranea species 0 1 1 0 genus 188907 582 1 0 species Oleispira antarctica 582 188908 2 4 0 genus 48075 1 Marinobacterium 982 1 species 0 Marinobacterium aestuarii 978 1821621 Bacterioplanes 298 1537406 1 4 2 genus 0 1249553 Bacterioplanes sanyensis 294 1 species 0 genus 0 2 1 413 Thalassolituus 1 187492 species 0 1 187493 412 Thalassolituus oleivorans Alcanivoracaceae 3924 224372 1 37 9 0 family 6 45 0 genus Alcanivorax 3265 59753 1 1306787 944 Alcanivorax pacificus 0 species 1 0 species 1 966 Alcanivorax dieselolei 285091 254 2638842 no rank 0 1 1113728 254 Alcanivorax sp. NBRC 101098 species 0 1 1 species 0 59754 Alcanivorax borkumensis 214 842 Alcanivorax xenomutans 1094342 species 0 1 2 4 0 genus Ketobacter 622 2025617 1 1 0 species 1917421 Ketobacter alkanivorans 618 0 family 5 13 1 255527 1098 Saccharospirillaceae genus 0 2 9 644 Gynuella 1 1445504 species 0 1 1445505 635 Gynuella sunshinyii 441 Reinekea 1 230494 0 genus 4 2 species 0 1 1336806 437 Reinekea forsetii 5 3 family 0 191033 1 Oleiphilaceae 475 141450 1 Oleiphilus 470 2 4 genus 0 466 Oleiphilus messinensis 141451 species 0 1 family 0 2 3 1 224379 956 Hahellaceae 2 7 0 genus 158481 1 Hahella 954 158327 Hahella chejuensis 947 1 0 species 6 37 family 0 1920240 1 Kangiellaceae 1519 8 5 0 genus 261963 1 Kangiella 1482 1 0 species 261964 Kangiella koreensis 483 1 0 species Kangiella geojedonensis 189 914150 Kangiella sediminilitoris 430 1144748 1 species 0 1 0 species 1561924 Kangiella profundi 372 1706369 1 Cellvibrionales 8608 28 66 0 order Microbulbiferaceae 1979 1706373 1 5 12 0 family 1967 Microbulbifer 1 48073 0 genus 24 4 1769779 600 Microbulbifer aggregans 0 species 1 1 species 0 260552 Microbulbifer agarilyticus 593 252514 Microbulbifer thermotolerans 750 1 species 0 13 9 family 0 Cellvibrionaceae 4438 1706371 1 1 2 0 genus 2036021 1 Agarilytica 768 species 0 1 1737490 767 Agarilytica rhodophyticola 2 3 genus 0 Teredinibacter 549 2425 1 2426 546 Teredinibacter turnerae 0 species 1 0 genus 1 2 534 Saccharophagus 1 316625 1 species 0 Saccharophagus degradans 533 86304 0 genus 23 4 1996 Cellvibrio 1 10 1 0 species 155077 Cellvibrio japonicus 482 2 0 no rank 1491 2624793 1 species 0 Cellvibrio sp. PSBB023 525 1945512 0 species 1 1987723 966 Cellvibrio sp. PSBB006 0 genus 2 7 582 Simiduia 1 447467 Simiduia agarivorans 575 447471 1 0 species family 0 5 15 1162 Spongiibacteraceae 1 1706375 441 1084558 0 genus 1 1 0 species Oceanicoccus sagamiensis 441 716816 1 630749 366 Spongiibacter 0 genus 2 2 no rank 0 1 364 2631504 species 0 1 364 Spongiibacter sp. IMCC21906 1620392 1 0 genus 1434050 340 1470434 Zhongshania aliphaticivorans 340 1 species 0 family 0 5 4 1 1706372 963 Halieaceae Halioglobus 958 1217416 1 3 15 0 genus 930806 Halioglobus pacificus 547 1 species 0 species 0 1 930805 396 Halioglobus japonicus 91347 1 Enterobacterales 630049 1350 243 0 order 3029 117 family 0 Enterobacteriaceae 517746 543 1 547 1 Enterobacter 29622 2069 22 genus 0 20333 354276 species group 0 12 1 species 0 69218 Enterobacter cancerogenus 634 1 species 0 Enterobacter asburiae 2470 61645 3650 Enterobacter hormaechei 1 158836 0 species 2272 3 1296536 Enterobacter xiangfangensis 555 1 subspecies 0 1 subspecies 0 Enterobacter cloacae complex 'Hoffmann cluster III' 823 1812934 753 Enterobacter kobei 208224 species 0 1 1812935 674 Enterobacter cloacae complex 'Hoffmann cluster IV' 0 species 1 3111 2757714 0 no rank 3 0 species 1 821 Enterobacter cloacae complex bacterium 2027919 1915310 500 Enterobacter cloacae complex sp. ECNIH7 species 0 1 species 0 1 2077137 1790 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 8239 Enterobacter cloacae 550 0 species 1 Enterobacter ludwigii 802 299767 1 species 0 no rank 0 9 7220 2608935 1 species 0 2051905 Enterobacter sp. CRENT-193 724 1977566 Enterobacter sp. Crenshaw 531 1 0 species 1 0 species Enterobacter sp. SA187 1270 1914861 1166130 1008 Enterobacter sp. R4-368 0 species 1 1 0 species 1868135 Enterobacter sp. HK169 539 584 Enterobacter sp. E20 1560339 species 0 1 719 Enterobacter sp. 638 399742 0 species 1 1023 Enterobacter sp. FY-07 1692238 0 species 1 1827481 822 Enterobacter sp. ODB01 species 0 1 0 genus 4 65 3840 Lelliottia 1 1330545 0 species 1 851 Lelliottia jeotgali 1907578 69220 1102 Lelliottia nimipressuralis species 0 1 1822 Lelliottia amnigena 61646 species 0 1 4488 Pluralibacter 1 1330546 0 genus 3 22 1 0 species 1334193 [Enterobacter] lignolyticus 1507 61647 Pluralibacter gergoviae 2959 1 0 species 191675 3343 no rank 0 17 17 clade 0 3343 84563 93 1906659 1 genus 0 0 species 1 93 Candidatus Hoaglandella endobia 1778263 70 1906657 0 genus 1 1 0 species Candidatus Doolittlea endobia 70 1778262 1906660 1 Candidatus Mikella 69 1 2 0 genus 1778264 Candidatus Mikella endobia 68 1 0 species 146507 683 3 clade 0 1 0 genus 568987 230 138072 Candidatus Hamiltonella defensa 230 1 0 species 165 secondary endosymbiont of Heteropsylla cubana 134287 species 0 1 1199245 secondary endosymbiont of Ctenarytaina eucalypti 288 1 0 species 347 1906661 0 genus 1 1 0 species Candidatus Gullanella endobia 347 1070130 199891 92 0 clade 1 0 species 1 92 secondary endosymbiont of Trabutina mannipara 1835721 clade 0 7 84564 1641 genus 0 7 7 1 203804 1641 Candidatus Blochmannia 624 711328 2 no rank 0 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 321 1 0 species 1 species 0 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 303 1505597 251542 253 Candidatus Blochmannia chromaiodes 0 species 1 252 Candidatus Blochmannia pennsylvanicus 101534 0 species 1 251535 Candidatus Blochmannia vafer 190 1 0 species 0 species 1 315 Candidatus Blochmannia floridanus 203907 genus 0 1 348 1682492 0 species 1 348 Candidatus Tachikawaea gelatinosa 1410383 206 8 genus 0 413496 1 Cronobacter 8967 1 species 0 535744 Cronobacter universalis 2451 species 0 1 1726 Cronobacter sakazakii 28141 1 0 species 413503 Cronobacter malonaticus 789 1 species 0 413497 Cronobacter dublinensis 1085 1 species 0 Cronobacter condimenti 883 1163710 1 0 species 413501 Cronobacter muytjensii 970 0 species 1 857 Cronobacter turicensis 413502 3557 Leclercia 1 83654 0 genus 190 4 2 0 no rank 2562 2627398 1920114 1497 Leclercia sp. LSNIH1 0 species 1 1 species 0 Leclercia sp. LSNIH3 1065 1920116 83655 Leclercia adecarboxylata 805 1 species 0 Shigella 35047 620 1 4 2145 0 genus 622 11263 Shigella dysenteriae 0 species 1 7149 Shigella flexneri 623 species 0 1 1 no rank 0 14490 2629414 1813821 Shigella sp. PAMC 28760 14490 1 species 0 2 2 0 genus Candidatus Ishikawaella 231 409304 1 Candidatus Ishikawaella capsulata 229 168169 1 species 0 1 590 27632 Salmonella genus 0 112 3 1 species 0 Salmonella bongori 1096 54736 28901 26424 Salmonella enterica species 0 1 0 genus 1 400 401618 Candidatus Riesia pediculicola 400 401619 1 species 0 4406 Kosakonia 1 1330547 genus 0 5 51 Kosakonia oryzae 875 497725 1 0 species 1393 Kosakonia cowanii 208223 species 0 1 species 0 1 1158459 851 Kosakonia sacchari 1236 Kosakonia radicincitans 283686 species 0 1 0 genus 77 3 1 160674 8710 Raoultella 0 species 1 6657 Raoultella ornithinolytica 54291 Raoultella planticola 1976 575 1 0 species genus 0 1 2 1 1048757 66 Candidatus Moranella 1 0 species Candidatus Moranella endobia 65 1048758 Escherichia 214058 561 1 5 1893 0 genus 191076 Escherichia coli 562 0 species 1 species 0 1 1499973 2429 Escherichia marmotae 1 species 0 Escherichia fergusonii 6967 564 208962 Escherichia albertii 11693 1 species 0 18 2 genus 0 158483 1 Cedecea 2855 species 0 1 158822 2837 Cedecea neteri 10 2864 0 genus 570 1 Klebsiella 129495 548 8034 Klebsiella aerogenes 0 species 1 no rank 0 2 2608929 4412 Klebsiella sp. LTGPAF-6F 2512 1905288 1 species 0 0 species 1 1934254 1900 Klebsiella sp. M5al 7623 Klebsiella oxytoca 571 0 species 1 1463165 Klebsiella quasipneumoniae 6280 1 0 species 2026240 Klebsiella quasivariicola 5509 1 0 species Klebsiella variicola 15551 244366 1 0 species Klebsiella michiganensis 4266 1134687 1 species 0 1 0 species Klebsiella pneumoniae 74956 573 579 1226 genus 0 1 Kluyvera intermedia 1226 61648 1 species 0 1335483 1140 genus 0 1 563 1140 Shimwellia blattae species 0 1 1764 14 genus 0 Citrobacter 30019 544 1 2582 2644389 2 0 no rank 1 species 0 1920110 Citrobacter sp. CFNIH10 1722 1702170 860 Citrobacter sp. FDAARGOS_156 0 species 1 545 Citrobacter koseri 7619 1 0 species 1 species 0 Citrobacter rodentium 1379 67825 3334 Citrobacter amalonaticus 35703 0 species 1 1344959 12495 7 species group 0 546 Citrobacter freundii 5542 1 0 species 1 species 0 Citrobacter freundii complex sp. CFNIH3 1328 2077147 1 0 species Citrobacter braakii 1382 57706 1 species 0 Citrobacter freundii complex sp. CFNIH9 1051 2077149 Citrobacter werkmanii 1381 67827 1 species 0 1 species 0 Citrobacter freundii complex sp. CFNIH2 785 2066049 1026 Citrobacter freundii complex sp. CFNIH4 2077148 0 species 1 Citrobacter farmeri 846 67824 1 0 species 36866 5615 5 no rank 0 915 Plautia stali symbiont 891974 species 0 1 species 0 1 1920109 1253 Enterobacteriaceae bacterium ENNIH2 1 species 0 1920128 Enterobacteriaceae bacterium ENNIH3 1088 1 0 species 2066051 Enterobacteriaceae bacterium ENNIH1 1148 species 0 1 1211 Enterobacteriaceae bacterium strain FGI 57 693444 15241 Morganellaceae 1 1903414 family 0 114 21 6 20 0 genus Xenorhabdus 3243 626 1 40577 Xenorhabdus poinarii 472 1 0 species Xenorhabdus hominickii 542 351679 1 species 0 40576 947 Xenorhabdus bovienii species 0 1 574 Xenorhabdus doucetiae 351671 0 species 1 species 0 1 628 688 Xenorhabdus nematophila 2275 Morganella 1 581 genus 0 2 220 582 2055 Morganella morganii species 0 1 0 genus 14 4 1 29487 2115 Photorhabdus 1 species 0 Photorhabdus asymbiotica 664 291112 0 species 1 29488 796 Photorhabdus luminescens 1 species 0 Photorhabdus temperata 641 574560 Providencia 2812 586 1 26 4 0 genus 588 Providencia stuartii 1244 1 species 0 126385 640 Providencia alcalifaciens species 0 1 0 species 1 587 902 Providencia rettgeri 637 377 1 genus 0 Arsenophonus symbiont of Lipoptena fortisetosa 377 634113 1 species 0 genus 0 3 277 4305 Proteus 1 583 0 species 1 584 3158 Proteus mirabilis 1 species 0 585 Proteus vulgaris 870 20 84 0 family Pectobacteriaceae 18189 1903410 1 Brenneria 1135 71655 1 19 2 genus 0 species 0 1 1109412 1116 Brenneria goodwinii 5 95 genus 0 84565 1 Sodalis 2318 1 species 0 Candidatus Sodalis pierantonius 573 1486991 species 0 1 1929246 97 Sodalis endosymbiont of Henestaris halophilus 1 0 species Sodalis glossinidius 600 63612 1 0 species 1239307 Sodalis praecaptivus 953 1 122277 7377 Pectobacterium 0 genus 6 250 1 species 0 Pectobacterium wasabiae 592 55208 0 species 1 834 Pectobacterium atrosepticum 29471 2042057 Pectobacterium polaris 1311 1 species 0 1 0 species Pectobacterium carotovorum 3521 554 1 species 0 Pectobacterium parmentieri 869 1905730 7275 Dickeya 1 204037 0 genus 6 330 Dickeya dadantii 1105 204038 1 species 0 Dickeya zeae 1529 204042 1 0 species 1089444 Dickeya solani 2032 1 species 0 1211 Dickeya fangzhongdai 1778540 species 0 1 1 0 species Dickeya dianthicola 1068 204039 11544 Hafniaceae 1 1903412 0 family 18 14 Hafnia 2425 568 1 3 40 0 genus 686 2621980 0 no rank 1 686 Hafnia sp. CBA7124 1848580 species 0 1 1 0 species 569 Hafnia alvei 1699 82982 1 Obesumbacterium 874 2 18 0 genus species 0 1 82983 856 Obesumbacterium proteus 709 8 0 genus Edwardsiella 8227 635 1 1821960 Edwardsiella anguillarum 832 1 species 0 1714 Edwardsiella tarda 636 species 0 1 1901 2676541 2 no rank 0 1 0 species 1650654 Edwardsiella sp. LADL05-105 823 1 species 0 1578828 Edwardsiella sp. EA181011 1078 1080 Edwardsiella piscicida 1263550 0 species 1 1048 Edwardsiella ictaluri 67780 0 species 1 1 0 species 93378 Edwardsiella hoshinae 943 23544 Erwiniaceae 1 1903409 family 0 73 27 0 genus 2 21 1 32199 3171 Buchnera 1 0 species Buchnera aphidicola 3150 9 4608 Erwinia 1 551 genus 0 230 8 species 0 1 535 Erwinia amylovora 552 1 0 species 1922217 Candidatus Erwinia sp. ErCipseudotaxifoliae 245 338565 Erwinia tasmaniensis 671 1 0 species 1 species 0 Erwinia gerundensis 704 1619313 0 species 1 1186 Erwinia billingiae 182337 2622719 611 no rank 0 1 1 0 species 215689 Erwinia sp. Ejp617 611 Erwinia pyrifoliae 426 79967 1 0 species 537 51228 genus 0 1 51229 Wigglesworthia glossinidia 537 1 0 species genus 0 2 2225 2100764 0 species 1 665914 1118 Pantoea gaviniae species 0 1 1107 Pantoea calida 665913 1 82986 569 Tatumella genus 0 2 9 53336 560 Tatumella citrea 0 species 1 12361 Pantoea 1 53335 0 genus 934 11 811 Pantoea alhagi 1891675 species 0 1 0 species 1 767 Pantoea rwandensis 1076550 470934 Pantoea vagans 2264 1 0 species 553 Pantoea ananatis 1002 1 0 species 1 species group 0 1654067 1779 species 0 1 549 1779 Pantoea agglomerans 3548 2630326 0 no rank 3 Pantoea sp. At-9b 1151 592316 1 0 species 1167 Pantoea sp. PSNIH1 1484158 0 species 1 Pantoea sp. PSNIH2 1230 1484157 1 species 0 1 species 0 Pantoea stewartii 684 66269 1 0 species Candidatus Pantoea carbekii 572 1235990 1903411 1 Yersiniaceae 40438 171 39 family 0 1 34037 2918 Rahnella 0 genus 137 4 Rahnella aquatilis 891 34038 1 species 0 0 no rank 2 2635087 1890 0 species 1 1805933 1001 Rouxiella sp. ERMR1:05 Rahnella sp. Y9602 889 741091 1 species 0 genus 0 2 17 1 1745211 737 Chania 720 Chania multitudinisentens 1639108 0 species 1 629 1 Yersinia 10770 504 13 0 genus 529 Yersinia ruckeri 29486 0 species 1 28152 681 Yersinia kristensenii species 0 1 0 no rank 1 522 2653513 1839800 522 Yersinia sp. FDAARGOS_228 species 0 1 0 species 1 29484 1933 Yersinia frederiksenii 506 Yersinia aldovae 29483 species 0 1 Yersinia enterocolitica 2673 630 1 0 species 631 607 Yersinia intermedia 0 species 1 Yersinia aleksiciae 549 263819 1 species 0 1778 1649845 3 0 species group 1 species 0 Yersinia pestis 595 632 species 0 1 633 722 Yersinia pseudotuberculosis species 0 1 367190 461 Yersinia similis 29485 Yersinia rohdei 488 1 species 0 1 929812 1191 Gibbsiella genus 0 15 2 1176 Gibbsiella quercinecans 929813 0 species 1 Serratia 24601 613 1 1378 16 genus 0 Serratia liquefaciens 946 614 1 0 species 1 species 0 Serratia rubidaea 1316 61652 8584 2647522 no rank 0 8 768490 774 Serratia sp. AS12 species 0 1 0 species 1 1369 Serratia sp. FGI94 671990 1153 Serratia sp. SCBI 488142 0 species 1 1758196 Serratia sp. SSNIH1 1220 1 0 species 0 species 1 2033438 936 Serratia sp. MYb239 1327989 1380 Serratia sp. FS14 species 0 1 768493 774 Serratia sp. AS13 species 0 1 1 species 0 Serratia sp. ATCC 39006 978 104623 Serratia marcescens 5712 615 1 0 species 1 0 species Serratia proteamaculans 830 28151 species 0 1 47917 1903 Serratia fonticola 1 0 species 82996 Serratia plymuthica 2459 1 0 species Serratia ficaria 1473 61651 1 genus 0 1565532 Rouxiella 50 no rank 0 2 1240 451511 1240 Plesiomonas 1 702 0 genus 20 2 0 species 1 703 1220 Plesiomonas shigelloides 0 family 2 1903416 757 21 2 genus 0 Pragia 757 82984 1 82985 Pragia fontium 736 1 0 species 0 order 29 221 35374 Aeromonadales 1 135624 455 28 family 0 Aeromonadaceae 35153 84642 1 0 genus 18 2202 29004 Aeromonas 1 642 1217 Aeromonas rivipollensis 948519 0 species 1 0 species 1 654 3354 Aeromonas veronii 0 species 1 648 729 Aeromonas caviae 0 species 1 1182 Aeromonas aquatica 558964 8 no rank 0 257493 8443 0 species 1 1636606 616 Aeromonas sp. ASNIH1 Aeromonas sp. ASNIH7 1074 1920107 1 0 species 854 Aeromonas sp. ASNIH2 1636607 species 0 1 Aeromonas sp. ASNIH5 1187 1758179 1 species 0 species 0 1 2033033 1316 Aeromonas sp. CU5 species 0 1 2033032 1398 Aeromonas sp. CA23 Aeromonas sp. ASNIH3 785 1636608 1 0 species species 0 1 1213 Aeromonas sp. ASNIH4 1636609 2111 Aeromonas salmonicida 645 species 0 1 0 species 1 1113 Aeromonas schubertii 652 Aeromonas media 1038 651 1 species 0 1 0 species Aeromonas dhakensis 1284 196024 species 0 1 644 6331 Aeromonas hydrophila 2 10 genus 0 129577 1 Oceanimonas 1665 no rank 0 1 1655 2636315 1 species 0 Oceanimonas sp. GK1 1655 511062 genus 0 2 14 1 347533 2077 Zobellella 1 0 species 347534 Zobellella denitrificans 2063 Oceanisphaera 856 225143 1 3 1 0 genus 1416627 Oceanisphaera profunda 416 1 0 species species 0 1 439 Oceanisphaera sp. AMac2203 1903694 1 43947 1096 Tolumonas genus 0 1 2 0 species 1 43948 1095 Tolumonas auensis 72274 1 Pseudomonadales 153679 882 129 0 order 0 family 146 42 1 468 29166 Moraxellaceae 25 294 0 genus Acinetobacter 21514 469 1 1148157 747 Acinetobacter oleivorans species 0 1 196816 3453 no rank 0 7 Acinetobacter sp. TTH0-4 442 1646498 1 species 0 1808001 644 Acinetobacter sp. LoGeW2-3 0 species 1 Acinetobacter sp. ACNIH2 528 1758189 1 species 0 0 species 1 363 Acinetobacter sp. SWBY1 2079596 1 species 0 Acinetobacter sp. ACNIH1 585 1636603 1 0 species Acinetobacter sp. TGL-Y2 411 1407071 1 species 0 Acinetobacter sp. NCu2D-2 480 1608473 1 species 0 559 202950 Acinetobacter sp. ADP1 559 62977 1 0 strain 1097 Acinetobacter haemolyticus 29430 0 species 1 40214 Acinetobacter johnsonii 533 1 0 species 579 Acinetobacter radioresistens 40216 0 species 1 1 species 0 Acinetobacter equi 904 1324350 108981 Acinetobacter schindleri 983 1 0 species 106648 Acinetobacter bereziniae 977 1 species 0 species 0 1 572 Acinetobacter indicus 756892 1789224 561 Acinetobacter larvae 0 species 1 8572 909768 0 species group 5 577 Acinetobacter lactucae 1785128 0 species 1 106654 Acinetobacter nosocomialis 881 1 0 species 470 Acinetobacter baumannii 3207 1 species 0 471 1319 Acinetobacter calcoaceticus 0 species 1 48296 Acinetobacter pittii 2588 1 species 0 487316 Acinetobacter soli 571 1 0 species 1 species 0 Acinetobacter junii 1112 40215 40 5 genus 0 475 1 Moraxella 2802 Moraxella osloensis 1222 34062 1 species 0 29433 388 Moraxella ovis species 0 1 702 Moraxella bovoculi 386891 species 0 1 480 450 Moraxella catarrhalis species 0 1 1 497 4704 Psychrobacter 0 genus 11 51 species 0 1 261164 428 Psychrobacter alimentarius species 0 1 639 Psychrobacter cryohalolentis 330922 45610 Psychrobacter urativorans 376 1 species 0 0 no rank 6 2577 196806 Psychrobacter sp. P11G5 323 1699624 1 species 0 0 species 1 615 Psychrobacter sp. G 571800 562 Psychrobacter sp. AntiMn-1 1720344 0 species 1 1028416 Psychrobacter sp. DAB_AL43B 405 1 species 0 1699622 Psychrobacter sp. P2G3 317 1 0 species 349106 Psychrobacter sp. PRwf-1 355 1 0 species 0 species 1 334543 633 Psychrobacter arcticus 1 135621 123631 Pseudomonadaceae family 0 86 880 1849530 1 Oblitimonas 439 2 18 genus 0 421 Oblitimonas alkaliphila 1697053 0 species 1 3 0 subfamily 3595 351 3595 Azotobacter 1 352 genus 0 20 3 1 species 0 354 Azotobacter vinelandii 1287 2288 Azotobacter chroococcum 353 0 species 1 118717 Pseudomonas 1 286 genus 0 4547 80 136841 15906 6 0 species group 2902 Pseudomonas citronellolis 53408 species 0 1 0 species 1 1271 Pseudomonas alcaligenes 43263 1 species 0 Pseudomonas aeruginosa 5058 287 1232139 1517 1 species subgroup 0 Pseudomonas furukawaii 1517 1149133 1 0 species 1373 Pseudomonas resinovorans 53412 0 species 1 1 species 0 Pseudomonas mendocina 3785 300 1573 Pseudomonas brassicacearum 930166 0 species 1 species 0 1 216142 845 Pseudomonas rhizosphaerae 1 0 species 157782 Pseudomonas parafulva 1403 1 0 species Pseudomonas entomophila 1059 312306 24633 196821 0 no rank 30 species 0 1 1649877 1116 Pseudomonas sp. CCOS 191 Pseudomonas sp. ATCC 13867 1386 1294143 1 0 species 0 species 1 1329 Pseudomonas sp. St29 1500687 1 0 species 1338689 Pseudomonas sp. JY-Q 820 species 0 1 1415630 820 Pseudomonas sp. TKP 1 0 species Pseudomonas sp. PONIH3 1054 1636610 1 species 0 1283291 Pseudomonas sp. URMO17WK12:I11 1182 Pseudomonas sp. NC02 663 2067572 1 species 0 species 0 1 1400 Pseudomonas sp. Os17 1500686 2083052 952 Pseudomonas sp. SWI36 0 species 1 1 species 0 Pseudomonas sp. TCU-HL1 1086 1856685 1 species 0 Pseudomonas sp. FDAARGOS_380 582 2018067 1931241 Pseudomonas sp. S-6-2 539 1 species 0 Pseudomonas sp. LPH1 782 1898684 1 species 0 960 Pseudomonas sp. MRSN12121 1611770 0 species 1 species 0 1 577 Pseudomonas sp. VLB120 69328 0 species 1 550 Pseudomonas sp. MYb193 1827300 482 Pseudomonas sp. GR 6-02 1659194 0 species 1 0 species 1 2083053 614 Pseudomonas sp. SWI44 690 Pseudomonas sp. UW4 1207075 0 species 1 1981174 339 Pseudomonas sp. M30-35 0 species 1 2083051 525 Pseudomonas sp. SWI6 0 species 1 1 species 0 2083055 Pseudomonas sp. LH1G9 1071 species 0 1 2069256 585 Pseudomonas sp. XWY-1 Pseudomonas sp. LG1D9 643 2083054 1 species 0 1 0 species 2049589 Pseudomonas sp. HLS-6 629 1 0 species Pseudomonas sp. StFLB209 1152 1028989 1930532 Pseudomonas sp. CC6-YY-74 695 1 species 0 1534110 Pseudomonas sp. DR 5-09 670 1 0 species 740 Pseudomonas sp. FGI182 1259844 0 species 1 5607 136842 0 species group 2 1 species 0 587753 Pseudomonas chlororaphis 4268 species 0 1 1339 Pseudomonas fragi 296 244566 Pseudomonas lurida 607 1 0 species 198620 Pseudomonas koreensis 1308 1 species 0 species group 0 2 136846 7372 6599 578833 species subgroup 0 1 1 0 species Pseudomonas stutzeri 6599 316 1 species 0 74829 Pseudomonas balearica 773 0 species 1 237610 1135 Pseudomonas psychrotolerans 1 species 0 Pseudomonas cerasi 932 1583341 101564 1246 Pseudomonas alcaliphila species 0 1 832 Pseudomonas cremoricolorata 157783 species 0 1 Pseudomonas antarctica 589 219572 1 0 species 0 species group 8 10481 136849 1 0 species subgroup 4515 251695 317 4515 Pseudomonas syringae 0 species 1 745 Pseudomonas viridiflava 33069 0 species 1 1 no rank 0 628 2775504 628 Pseudomonas sp. Lz4W 1206777 species 0 1 1957 251698 species subgroup 0 2 1 0 species Pseudomonas amygdali 1053 47877 0 species 1 29438 904 Pseudomonas savastanoi 1 0 species 36746 Pseudomonas cichorii 655 251701 1358 Pseudomonas syringae group genomosp. 3 species 0 1 1 species 0 46257 Pseudomonas avellanae 623 species 0 1 65741 1391 Pseudomonas knackmussii 237609 617 Pseudomonas alkylphenolica 0 species 1 0 species 1 1459 Pseudomonas frederiksbergensis 104087 1788301 709 Pseudomonas versuta species 0 1 9 0 species group 136843 15750 1 species 0 47878 Pseudomonas azotoformans 1285 47879 755 Pseudomonas corrugata 0 species 1 538 Pseudomonas orientalis 76758 0 species 1 species 0 1 294 8703 Pseudomonas fluorescens Pseudomonas poae 587 200451 1 species 0 1 0 species 75612 Pseudomonas mandelii 799 1 species 0 200450 Pseudomonas trivialis 1055 0 species 1 1440 Pseudomonas protegens 380021 76761 Pseudomonas veronii 588 1 species 0 species group 0 6 136845 18018 1 species 0 78327 Pseudomonas mosselii 1901 303 Pseudomonas putida 9822 1 species 0 1 species 0 Pseudomonas monteilii 2548 76759 1 0 species 47885 Pseudomonas oryzihabitans 1304 70775 757 Pseudomonas plecoglossicida species 0 1 47880 Pseudomonas fulva 1686 1 0 species 1853130 698 Pseudomonas silesiensis species 0 1 53 643 0 order 135614 1 Xanthomonadales 50736 family 0 38 549 1 32033 41615 Xanthomonadaceae 679 2370 1 genus 0 Xylella fastidiosa 679 2371 1 0 species genus 0 5 2 676 Luteimonas 1 83614 1 species 0 Luteimonas sp. 100111 671 2006110 68 1 Lysobacter 5239 5 67 genus 0 0 species 1 69 1199 Lysobacter enzymogenes Lysobacter antibioticus 1336 84531 1 species 0 262324 Lysobacter gummosus 1194 1 species 0 1 0 species 435897 Lysobacter capsici 1443 16514 Xanthomonas 1 338 genus 0 17 991 species 0 1 528 Xanthomonas phaseoli 1985254 781 Xanthomonas perforans 442694 0 species 1 574 Xanthomonas fragariae 48664 species 0 1 56459 648 Xanthomonas vasicola 0 species 1 0 species 1 347 1531 Xanthomonas oryzae 29447 Xanthomonas albilineans 574 1 0 species species 0 1 56458 1202 Xanthomonas sacchari 1 species 0 Xanthomonas vesicatoria 742 56460 species 0 1 669 Xanthomonas axonopodis 53413 343 Xanthomonas translucens 1718 1 species 0 565 Xanthomonas alfalfae 366650 species 0 1 2 species group 0 2840 643453 Xanthomonas citri 2231 346 1 species 0 366648 Xanthomonas fuscans 609 1 0 species 456327 Xanthomonas euvesicatoria 597 1 species 0 1 species 0 Xanthomonas campestris 1888 339 56454 666 Xanthomonas hortorum species 0 1 genus 0 74 3 3328 Pseudoxanthomonas 1 83618 0 species 1 314722 2263 Pseudoxanthomonas suwonensis 1 0 species Pseudoxanthomonas spadix 991 415229 40323 1 Stenotrophomonas 14630 477 9 0 genus 4 0 no rank 196198 4042 0 species 1 1827305 796 Stenotrophomonas sp. MYb57 species 0 1 1225 Stenotrophomonas sp. WZN-1 2005046 Stenotrophomonas sp. KCTC 12332 974 1793721 1 species 0 0 species 1 1047 Stenotrophomonas sp. LM091 1904944 species 0 1 128780 1817 Stenotrophomonas acidaminiphila 216778 1064 Stenotrophomonas rhizophila species 0 1 995085 6458 0 species group 1 0 species 1 6458 Stenotrophomonas maltophilia 40324 83617 772 Stenotrophomonas nitritireducens 0 species 1 1775411 1 Rhodanobacteraceae 8478 14 75 0 family 1 75309 1178 Rhodanobacter 0 genus 2 38 0 species 1 1140 Rhodanobacter denitrificans 666685 1 2 0 genus 70411 1 Frateuria 840 81475 839 Frateuria aurantia 0 species 1 1 0 genus 2233801 569 1 0 species Xanthomonadales bacterium D13 569 2021234 2 2 0 genus 242605 1 Luteibacter 716 0 species 1 714 Luteibacter rhizovicinus 242606 9 2 genus 0 323413 1 Dokdonella 1190 0 species 1 323415 1181 Dokdonella koreensis 3910 Dyella 1 231454 genus 0 4 120 231455 1283 Dyella japonica 0 species 1 1 species 0 1379159 Dyella jiangningensis 1072 Dyella thiooxydans 1435 445710 1 0 species 1775403 1 Nevskiales 597 2 4 0 order 568386 Sinobacteraceae 7 1 0 family family 0 2 588 2689614 1 469322 588 Steroidobacter genus 0 4 2 465721 Steroidobacter denitrificans 584 1 0 species no rank 0 13 118884 4650 1201 32036 0 clade 3 Bathymodiolus septemdierum thioautotrophic gill symbiont 281 113267 1 0 species 1541743 401 1 genus 0 386487 401 Candidatus Ruthia magnifica species 0 1 1 species 0 Calyptogena okutanii thioautotrophic gill symbiont 519 410330 3 1 genus 0 Candidatus Thioglobus 841 655184 1 1427364 505 Candidatus Thioglobus singularis species 0 1 1705394 335 Candidatus Thioglobus autotrophicus species 0 1 1 1608298 621 Thiolapillus 0 genus 3 2 Thiolapillus brandeum 618 1076588 1 species 0 Pseudohongiella 509 1524249 1 2 8 0 genus 501 Pseudohongiella spirulinae 1249552 species 0 1 198346 648 clade 0 1 186490 Candidatus Baumannia cicadellinicola 648 1 0 species 3 2 genus 0 Sedimenticola 830 349742 1 1 species 0 Sedimenticola thiotaurini 827 1543721 43 32 order 0 135625 1 Pasteurellales 210842 Pasteurellaceae 210799 712 1 463 31 family 0 155493 933 1 genus 0 933 Gallibacterium anatis 750 species 0 1 3 28 genus 0 745 1 Pasteurella 4435 species 0 1 747 3226 Pasteurella multocida 1 0 species 754 Pasteurella dagmatis 1181 4 3 0 genus Aggregatibacter 3923 416916 1 1083 Aggregatibacter actinomycetemcomitans 714 species 0 1 1 species 0 Aggregatibacter aphrophilus 2836 732 1 697331 998 Basfia 0 genus 2 2 [Mannheimia] succiniciproducens 996 157673 1 0 species 20 4 genus 0 75984 1 Mannheimia 3155 Mannheimia varigena 1371 85404 1 species 0 2645054 764 1 0 no rank 1 species 0 Mannheimia sp. USDA-ARS-USMARC-1261 764 1432056 1 0 species Mannheimia haemolytica 1000 75985 1 214906 1293 Histophilus genus 0 2 1 731 Histophilus somni 1292 1 0 species 1 724 188788 Haemophilus genus 0 40 6 species 0 1 729 161946 Haemophilus parainfluenzae 4798 2609962 1 0 no rank 1 0 species 712310 Haemophilus sp. oral taxon 036 4798 727 Haemophilus influenzae 10767 1 species 0 1 0 species [Haemophilus] ducreyi 1049 730 0 species 1 249188 10188 Haemophilus pittmaniae genus 0 4 2 1 476528 1387 Bibersteinia 47735 1383 Bibersteinia trehalosi species 0 1 1525 Glaesserella 1 2094023 0 genus 1 2 1 species 0 738 Glaesserella parasuis 1524 3899 Actinobacillus 1 713 genus 0 5 30 716 Actinobacillus suis 1041 1 species 0 1 0 species 67854 Actinobacillus succinogenes 521 718 785 Actinobacillus equuli 0 species 1 0 species 1 715 1522 Actinobacillus pleuropneumoniae 50119 Alteromonadales 1 135622 order 0 214 105 Moritellaceae 751 267891 1 3 3 family 0 2 6 0 genus 58050 1 Moritella 748 1 0 species Moritella viscosa 742 80854 14912 Alteromonadaceae 1 72275 family 0 29 140 2 2 0 genus 1621534 1 Paraglaciecola 494 1 species 0 326544 Paraglaciecola psychrophila 492 2 2 genus 0 1751872 1 Lacimicrobium 946 1 0 species Lacimicrobium alkaliphilum 944 1526571 Marinobacter 7359 2742 1 49 10 genus 0 1 species 0 Marinobacter hydrocarbonoclasticus 1387 2743 1 0 species 1033846 Marinobacter adhaerens 668 1 species 0 1420917 Marinobacter salarius 1015 2413 83889 3 0 no rank species 0 1 490759 557 Marinobacter sp. BSs20148 1 species 0 Marinobacter sp. CP1 690 1671721 1166 Marinobacter sp. LQ44 1749259 species 0 1 1 0 species Marinobacter salinus 725 1874317 1 species 0 Marinobacter similis 609 1420916 1 0 species 330734 Marinobacter psychrophilus 493 1 genus 0 380 261825 680279 380 Agarivorans gilvus 0 species 1 genus 0 10 41 1 226 4605 Alteromonas 1 species 0 715451 Alteromonas naphthalenivorans 426 0 species 1 28108 1181 Alteromonas macleodii 909 Alteromonas mediterranea 314275 species 0 1 287094 376 Alteromonas addita species 0 1 1 0 species Alteromonas stellipolaris 515 233316 1 species 0 Alteromonas australica 308 589873 no rank 0 3 2614992 849 1777491 293 Alteromonas sp. Mac1 species 0 1 1 0 species Alteromonas sp. RW2A1 241 1917158 2058133 Alteromonas sp. MB-3u-76 315 1 0 species 0 genus 5 3 1 89404 988 Glaciecola 300231 Glaciecola nitratireducens 552 1 0 species 1 no rank 0 431 2618684 1 species 0 Glaciecola sp. 4H-3-7+YE-5 431 983545 1 267889 4889 Colwelliaceae family 0 5 9 1 1518149 612 Thalassotalea 0 genus 2 2 1 0 species 1763536 Thalassotalea crassostreae 610 4272 Colwellia 1 28228 genus 0 5 6 28229 1223 Colwellia psychrerythraea species 0 1 2194 196834 0 no rank 3 species 0 1 733 Colwellia sp. PAMC 20917 1816218 1816219 Colwellia sp. PAMC 21821 717 1 0 species species 0 1 58049 744 Colwellia sp. MT41 species 0 1 1967665 850 Colwellia beringensis 0 family 25 33 1 267888 13604 Pseudoalteromonadaceae 1 53246 13571 Pseudoalteromonas 0 genus 488 24 species 0 1 603 Pseudoalteromonas tunicata 314281 43657 Pseudoalteromonas luteoviolacea 523 1 0 species 625 Pseudoalteromonas espejiana 28107 0 species 1 1 0 species 394751 Pseudoalteromonas arctica 524 288 Pseudoalteromonas atlantica 693 1 species 0 194690 2802 5 0 no rank species 0 1 1761891 555 Pseudoalteromonas sp. 13-15 234831 440 Pseudoalteromonas sp. SM9913 0 species 1 1 0 species Pseudoalteromonas sp. NC201 539 1514074 0 species 1 1720343 592 Pseudoalteromonas sp. 1_2015MBL_MicDiv 283699 Pseudoalteromonas sp. Bsw20308 676 1 0 species 1 species 0 Pseudoalteromonas translucida 455 166935 436 Pseudoalteromonas agarivorans 176102 0 species 1 648 Pseudoalteromonas spongiae 298657 species 0 1 546 Pseudoalteromonas issachenkonii 152297 0 species 1 696 Pseudoalteromonas piratica 1348114 0 species 1 43659 Pseudoalteromonas tetraodonis 519 1 0 species 43662 489 Pseudoalteromonas piscicida species 0 1 545 Pseudoalteromonas marina 267375 0 species 1 228 468 Pseudoalteromonas haloplanktis species 0 1 Pseudoalteromonas nigrifaciens 523 28109 1 species 0 247523 Pseudoalteromonas aliena 812 1 0 species 680 Pseudoalteromonas rubra 43658 0 species 1 1 0 species 161398 Pseudoalteromonas phenolica 496 Ferrimonadaceae 1236 267892 1 15 3 family 0 1 44011 1221 Ferrimonas 0 genus 12 2 0 species 1 44012 1209 Ferrimonas balearica Psychromonadaceae 1620 267894 1 1 4 family 0 Psychromonas 1619 67572 1 3 6 0 genus 0 no rank 1 682 2614957 314282 682 Psychromonas sp. CNPT3 species 0 1 0 species 1 357794 931 Psychromonas ingrahamii family 0 97 25 11620 Shewanellaceae 1 267890 0 genus 24 231 1 22 11523 Shewanella 1 species 0 Shewanella putrefaciens 492 24 1 0 species 62322 Shewanella baltica 1172 70863 418 Shewanella oneidensis species 0 1 465 Shewanella piezotolerans 404011 species 0 1 458 Shewanella marisflavi 260364 species 0 1 522 Shewanella violacea 60217 species 0 1 225848 Shewanella psychrophila 725 1 species 0 Shewanella frigidimarina 442 56812 1 0 species 271098 444 Shewanella halifaxensis 0 species 1 1 0 species 60478 Shewanella amazonensis 527 species 0 1 825 Shewanella japonica 93973 1922 196818 6 0 no rank 94122 Shewanella sp. ANA-3 454 1 0 species 60480 Shewanella sp. MR-4 241 1 0 species 60481 235 Shewanella sp. MR-7 species 0 1 1 0 species 2059264 Shewanella sp. Pdp11 364 332 Shewanella sp. W3-18-1 351745 0 species 1 1 0 species Shewanella sp. WE21 296 2029986 271097 Shewanella sediminis 556 1 species 0 1 species 0 2018305 Shewanella bicestrii 352 1 species 0 Shewanella denitrificans 394 192073 70864 471 Shewanella pealeana 0 species 1 60961 455 Shewanella woodyi species 0 1 Shewanella loihica 652 359303 1 0 species 67 6 family 0 267893 1 Idiomarinaceae 1273 19 5 0 genus Idiomarina 1206 135575 1 species 0 1 346 Idiomarina loihiensis 135577 0 no rank 2 542 2614829 1 0 species Idiomarina sp. X4 274 2055892 2100422 268 Idiomarina sp. OT37-5b species 0 1 1096243 Idiomarina piscisalsi 299 1 0 species 0 order 51 312 1 135613 22141 Chromatiales 0 no rank 2 1172 451214 Thiohalobacter 1172 1273155 1 2 28 0 genus 1144 Thiohalobacter thiocyanaticus 585455 species 0 1 3 11 family 0 Granulosicoccaceae 951 449719 1 0 genus 2 2 1 437504 940 Granulosicoccus Granulosicoccus antarcticus 938 437505 1 species 0 3 37 family 0 Wenzhouxiangellaceae 931 1676141 1 894 Wenzhouxiangella 1 1676142 genus 0 61 2 1579979 Wenzhouxiangella marina 833 1 0 species 14 4 0 family 255526 1 Halothiobacillaceae 1017 1003 Halothiobacillus 1 109262 0 genus 17 3 927 Halothiobacillus neapolitanus 472 1 0 species 2636392 514 no rank 0 1 Halothiobacillus sp. LS2 514 1860122 1 species 0 1046 1 Chromatiaceae 8631 148 18 family 0 2 39 0 genus Marichromatium 999 85076 1 37487 960 Marichromatium purpuratum species 0 1 1227 1 Nitrosococcus 1165 15 4 0 genus 1 0 species 473531 Nitrosococcus watsonii 239 1 0 species Nitrosococcus oceani 506 1229 Nitrosococcus halophilus 405 133539 1 0 species 1081 82569 0 no rank 1 species 0 1 1978339 1081 Chromatiaceae bacterium 2141T.STBD.0c.01a 7 2 0 genus Candidatus Nitrosoglobus 420 1980513 1 413 Candidatus Nitrosoglobus terrae 1630141 species 0 1 1250 Allochromatium 1 85072 0 genus 3 2 1049 Allochromatium vinosum 1247 1 0 species 2 2 0 genus 156885 1 Thioflavicoccus 665 species 0 1 663 Thioflavicoccus mobilis 80679 genus 0 16 2 1 53392 1531 Thiodictyon 0 species 1 1166950 1515 Candidatus Thiodictyon syntrophicum Thiocystis 1372 13724 1 2 25 genus 0 1347 Thiocystis violascens 73141 species 0 1 Woeseiaceae 202 1738654 1 3 3 family 0 Woeseia 199 1738655 1 2 4 0 genus species 0 1 1548547 195 Woeseia oceani 88 17 family 0 Ectothiorhodospiraceae 8925 72276 1 0 genus 3 11 1 1335745 1082 Spiribacter 736 Spiribacter curvatus 1335757 species 0 1 1335746 335 Spiribacter salinus species 0 1 4203 Thioalkalivibrio 1 106633 genus 0 79 6 1 no rank 0 2621013 699 396595 Thioalkalivibrio sp. K90mix 699 1 species 0 Thioalkalivibrio paradoxus 450 108010 1 species 0 1033854 1562 Thioalkalivibrio sulfidiphilus species 0 1 856 Thioalkalivibrio versutus 106634 species 0 1 186931 Thioalkalivibrio nitratireducens 557 1 species 0 genus 0 3 2 1134 Ectothiorhodospira 1 1051 0 no rank 1 2684909 1131 0 species 1 1442136 1131 Ectothiorhodospira sp. BSL-9 18 2 genus 0 Alkalilimnicola 1060 133193 1 351052 Alkalilimnicola ehrlichii 1042 1 0 species 85108 868 genus 0 1 1 species 0 1053 Halorhodospira halophila 868 490 Acidihalobacter 1 1765964 genus 0 2 1 160660 Acidihalobacter prosperus 489 1 species 0 312 135615 0 order 2 3 2 0 family Cardiobacteriaceae 312 868 1 309 869 0 genus 1 species 0 1 309 Dichelobacter nodosus 870 4 1 order 0 Orbales 2583 1240482 1 2582 Orbaceae 1 1240483 0 family 3 84 1290 1193503 genus 0 1 1196095 Gilliamella apicola 1290 1 species 0 1208 1335631 1 genus 0 1267021 Frischella perrara 1208 1 species 0 1692040 1 Acidiferrobacterales 1605 6 50 order 0 1 1692041 1555 Acidiferrobacteraceae family 0 5 29 2 4 genus 0 Sulfuricaulis 1069 1744881 1 0 species 1 1065 Sulfuricaulis limicola 1620215 457 Sulfurifustis 1 1692042 genus 0 2 11 species 0 1 446 Sulfurifustis variabilis 1675686 7 43 order 0 135623 1 Vibrionales 34489 0 family 42 285 34482 Vibrionaceae 1 641 2042066 755 1 0 genus 1755811 755 Paraphotobacterium marinum 0 species 1 4 19 genus 0 657 1 Photobacterium 2710 1295392 Photobacterium gaetbulicola 971 1 species 0 1 0 species 74109 Photobacterium profundum 783 38293 Photobacterium damselae 937 1 0 species 4 10 genus 0 511678 1 Aliivibrio 2501 1 0 species Aliivibrio salmonicida 795 40269 80852 Aliivibrio wodanis 714 1 0 species 1 species 0 Aliivibrio fischeri 982 668 570 30 0 genus Vibrio 27686 662 1 0 species group 10 717610 9171 2315253 1115 0 species subgroup 2 1 species 0 Vibrio diabolicus 716 50719 species 0 1 150340 399 Vibrio antiquarius 691 1091 Vibrio natriegens 0 species 1 1361 Vibrio parahaemolyticus 670 0 species 1 Vibrio owensii 694 696485 1 species 0 species 0 1 669 861 Vibrio harveyi 0 species 1 371 Vibrio rotiferianus 190895 680 1354 Vibrio campbellii species 0 1 766224 Vibrio jasicida 533 1 0 species 1 0 species 663 Vibrio alginolyticus 1791 1 species 0 Vibrio cholerae 1237 666 1891919 585 species group 0 1 585 Vibrio tubiashii 29498 species 0 1 0 species 1 45658 502 Vibrio scophthalmi 52443 471 Vibrio tapetis 0 species 1 190893 Vibrio coralliilyticus 1407 1 species 0 29494 728 Vibrio furnissii 0 species 1 1435069 792 Vibrio tritonius species 0 1 1 0 species 687 Vibrio gazogenes 879 Vibrio breoganii 692 553239 1 0 species 212663 646 Vibrio tasmaniensis 0 species 1 no rank 0 2 2614977 1177 2014742 Vibrio sp. 2521-89 585 1 0 species 0 species 1 592 Vibrio sp. EJY3 1116375 0 species 1 479 Vibrio qinghaiensis 2025808 Vibrio vulnificus 2122 672 1 0 species 0 species 1 1534743 476 Vibrio hyugaensis 28173 Vibrio nigripulchritudo 579 1 species 0 1 0 species 674 Vibrio mimicus 1156 1 0 species 55601 Vibrio anguillarum 2859 1 species 0 676 Vibrio fluvialis 1158 246861 1 Grimontia 545 9 2 0 genus 673 Grimontia hollisae 536 1 0 species 2 0 no rank 33811 1662 1248727 906 endosymbiont of unidentified scaly snail isolate Monju 0 species 1 gamma proteobacterium HdN1 756 83406 1 species 0 Immundisolibacterales 1247 1934945 1 44 4 0 order Immundisolibacteraceae 1203 1934946 1 3 85 family 0 17 2 0 genus Immundisolibacter 1118 1934947 1 1 0 species Immundisolibacter cernigliae 1101 1810504 class 0 11 1 4433 Oligoflexia 1 1553900 4 5 order 0 Bdellovibrionales 2484 213481 1 Bdellovibrionaceae 2480 213483 1 14 4 0 family 28 3 0 genus 958 1 Bdellovibrio 2466 0 species 1 453816 338 Bdellovibrio exovorus 2100 Bdellovibrio bacteriovorus 959 0 species 1 1948 Bacteriovoracales 1 2024979 0 order 4 5 263369 1 Bacteriovoracaceae 1002 1 2 family 0 1001 146784 0 genus 1 0 species 1 1001 Bacteriovorax stolpii 960 942 1652132 0 family 2 0 genus 9 2 942 Halobacteriovorax 1 1652133 1 species 0 Halobacteriovorax marinus 933 97084 313388 Betaproteobacteria 1 28216 class 0 733 350 0 order 563 36 1 206351 26773 Neisseriales family 0 22 259 1 481 14407 Neisseriaceae 681 421605 1 no rank 0 2052837 Neisseriaceae bacterium DSM 100970 681 1 species 0 2 5 0 genus Eikenella 1012 538 1 1007 Eikenella corrodens 539 0 species 1 10187 Neisseria 1 482 0 genus 12 192 0 species 1 487 2076 Neisseria meningitidis 2623750 1974 no rank 0 2 1 0 species 655307 Neisseria sp. KEM232 1194 780 Neisseria sp. 10022 1853276 species 0 1 1 0 species Neisseria gonorrhoeae 601 485 488 1183 Neisseria mucosa 0 species 1 1 0 species 490 Neisseria sicca 919 1853278 576 Neisseria sp. 10023 species 0 1 1 species 0 Neisseria elongata 709 495 species 0 1 486 813 Neisseria lactamica species 0 1 853 Neisseria zoodegmatis 326523 0 species 1 291 Neisseria weaveri 28091 0 genus 3 42 1 59 1119 Vitreoscilla 272 2627922 0 no rank 1 96942 Vitreoscilla sp. C1 272 1 species 0 805 Vitreoscilla filiformis 63 0 species 1 667 1193515 1 genus 0 1 species 0 1196083 Snodgrassella alvi 667 genus 0 1 2 482 Simonsiella 1 71 72 Simonsiella muelleri 481 1 species 0 13 174 0 family 1499392 1 Chromobacteriaceae 11803 885864 1 Jeongeupia 1103 2 13 genus 0 1090 2619593 1 no rank 0 1090 Jeongeupia sp. USM3 1906741 0 species 1 2 33 0 genus 168470 1 Laribacter 1669 1636 Laribacter hongkongensis 168471 0 species 1 2 9 0 genus 187 1 Aquaspirillum 1435 2620219 1426 1 no rank 0 1938604 Aquaspirillum sp. LM1 1426 1 0 species 27 2 0 genus 568394 1 Pseudogulbenkiania 1732 1 no rank 0 1705 2642558 0 species 1 748280 1705 Pseudogulbenkiania sp. NH8B 5690 90153 4 0 no rank 0 genus 118 4 5690 Chromobacterium 1 535 536 Chromobacterium violaceum 1680 1 species 0 0 species 1 1108595 2240 Chromobacterium vaccinii 1652 2641838 1 no rank 0 2059672 1652 Chromobacterium sp. ATCC 53434 0 species 1 12 no rank 0 3480 119066 1 327159 1352 Candidatus Accumulibacter 0 genus 2 34 1 0 species Candidatus Accumulibacter phosphatis 1318 327160 0 genus 1 2 189384 species 0 1 2 Candidatus Tremblaya princeps 189385 1862 Kinetoplastibacterium 1 33055 0 genus 6 42 species 0 1 412 Candidatus Kinetoplastibacterium desouzaii 994692 1 0 species Candidatus Kinetoplastibacterium galatii 397 994695 species 0 1 304 Candidatus Kinetoplastibacterium oncopeltii 994696 233181 Kinetoplastibacterium blastocrithidii 280 1 species 0 0 species 1 33056 427 Candidatus Kinetoplastibacterium crithidii 1381133 1 Candidatus Profftella 240 2 1 0 genus 669502 Candidatus Profftella armatura 239 1 species 0 1 genus 0 1301080 24 1 species 0 Candidatus Nasuia deltocephalinicola 24 1160784 0 no rank 2 1136 33809 0 species 1 1904640 910 Betaproteobacteria bacterium GR16-43 0 species 1 543913 226 beta proteobacterium CB 1 32003 14486 Nitrosomonadales 0 order 119 43 2008790 1 Thiobacillaceae 714 11 3 0 family 2 8 0 genus 919 1 Thiobacillus 703 1 species 0 36861 Thiobacillus denitrificans 695 3189 Methylophilaceae 1 32011 family 0 13 33 0 genus 1 335 16 335 2630143 no rank 0 1 0 species 1 335 Methylophilus sp. TWE2 1662285 1 3 0 genus 359407 1 Methylotenera 716 1055487 Methylotenera versatilis 420 1 species 0 359408 Methylotenera mobilis 295 1 0 species genus 0 3 16 1 81682 1004 Methylovorus 0 no rank 1 2634027 522 0 species 1 887061 522 Methylovorus sp. MP688 1 0 species 266009 Methylovorus glucosotrophus 466 1 1679002 522 Candidatus Methylopumilus genus 0 2 3 0 species 1 1581557 300 Candidatus Methylopumilus planktonicus 220 Candidatus Methylopumilus turicensis 1581680 species 0 1 0 genus 4 2 1 404 579 Methylobacillus 0 species 1 575 Methylobacillus flagellatus 405 0 family 5 109 2177 Sterolibacteriaceae 1 2008793 0 genus 2 16 1 378210 864 Methyloversatilis 0 no rank 1 2639971 848 1 species 0 1842540 Methyloversatilis sp. RAC08 848 2 50 genus 0 Sulfuritalea 1204 1054211 1 1154 Sulfuritalea hydrogenivorans 748811 species 0 1 2772226 1642 0 family 4 34 2 genus 0 Sulfuricella 685 935200 1 1 0 species 649841 Sulfuricella denitrificans 651 1778653 1 Sulfuriferula 957 2 36 genus 0 no rank 0 1 2637784 921 species 0 1 1985873 921 Sulfuriferula sp. AH1 Gallionellaceae 1659 90627 1 5 48 family 0 Gallionella 667 96 1 2 7 0 genus 370405 660 Gallionella capsiferriformans species 0 1 2 24 0 genus Sideroxydans 944 314343 1 63745 920 Sideroxydans lithotrophicus species 0 1 12 36 0 family 206379 1 Nitrosomonadaceae 4986 7 13 genus 0 914 1 Nitrosomonas 3130 344 Nitrosomonas communis 44574 0 species 1 Nitrosomonas europaea 655 915 1 0 species 475 Nitrosomonas eutropha 916 0 species 1 0 no rank 2 1061 2609265 422 Nitrosomonas sp. Is79A3 261292 0 species 1 153948 639 Nitrosomonas sp. AL212 0 species 1 Nitrosomonas ureae 582 44577 1 species 0 24 4 genus 0 Nitrosospira 1820 35798 1 species 0 1 529 Nitrosospira multiformis 1231 694 Nitrosospira briensis 35799 species 0 1 Nitrosospira lacus 573 1288494 1 species 0 0 order 376 22 1 206389 15984 Rhodocyclales 0 family 40 3 1 2008795 898 Azonexaceae 73029 1 Dechloromonas 858 21 2 0 genus Dechloromonas aromatica 837 259537 1 0 species 1 2008794 11205 Zoogloeaceae family 0 398 12 genus 0 144 6 1 33057 6395 Thauera 2609274 2973 no rank 0 2 species 0 1 1464 Thauera sp. MZ1T 85643 species 0 1 1509 Thauera sp. K11 2005884 1513 Thauera humireducens 1134435 species 0 1 0 species 1 893 Thauera aromatica 59405 96773 Thauera chlorobenzoica 872 1 species 0 0 genus 5 199 1 12960 4412 Azoarcus 2458 2629479 2 0 no rank 1 0 species 198107 Azoarcus sp. CIB 1224 0 species 1 748247 1234 Azoarcus sp. KH32C 835 Azoarcus sp. SY39 2067960 species 0 1 418699 Azoarcus olearius 920 1 0 species 6 95 family 0 Rhodocyclaceae 3505 75787 1 29 2 0 genus Aromatoleum 789 551759 1 0 species 1 760 Aromatoleum aromaticum 551760 1720 Azospira 1 146937 genus 0 41 2 0 species 1 1679 Azospira oryzae 146939 0 no rank 1 901 75788 Rhodocyclaceae bacterium 901 1898103 1 0 species 234 3047 order 0 Burkholderiales 250796 80840 1 29 271 family 0 75682 1 Oxalobacteraceae 29022 1 149698 8627 Massilia genus 0 6 227 2072590 1897 Massilia sp. ZMN-3 species 0 1 1 species 0 Massilia putida 1450 1141883 0 species 1 1334 Massilia sp. B2 2045208 no rank 0 2 3719 2609279 1678028 Massilia sp. NR 4-1 2123 1 species 0 Massilia sp. WG5 1596 1707785 1 species 0 32 4 genus 0 Collimonas 4889 202907 1 279058 Collimonas arenae 1589 1 species 0 279113 Collimonas pratensis 1770 1 0 species 158899 1498 Collimonas fungivorans 0 species 1 Oxalobacter 951 846 1 1 2 genus 0 0 species 1 847 950 Oxalobacter formigenes Herminiimonas 827 303379 1 3 16 0 genus 204773 472 Herminiimonas arsenicoxydans species 0 1 species 0 1 339 Herminiimonas arsenitoxidans 1809410 6829 Janthinobacterium 1 29580 genus 0 97 7 1 species 0 368607 Janthinobacterium svalbardensis 1594 4 no rank 0 2610881 4147 777 Janthinobacterium sp. B9-8 1236179 species 0 1 Janthinobacterium sp. 1_2014MBL_MicDiv 1544 1644131 1 0 species 375286 622 Janthinobacterium sp. Marseille 0 species 1 1938606 Janthinobacterium sp. LM6 1204 1 species 0 55508 Janthinobacterium agaricidamnosum 991 1 species 0 6628 Herbaspirillum 1 963 genus 0 247 6 0 species 1 1225 Herbaspirillum rubrisubalbicans 80842 831 2624150 no rank 0 1 1 species 0 2025949 Herbaspirillum sp. meg3 831 Herbaspirillum frisingense 1534 92645 1 0 species 1174 Herbaspirillum hiltneri 341045 species 0 1 species 0 1 964 1617 Herbaspirillum seropedicae 2 no rank 0 80841 4079 1469502 Burkholderiales bacterium GJ-E10 1001 1 species 0 Burkholderiales bacterium YL45 3078 1834205 1 0 species 1 119060 88287 Burkholderiaceae 0 family 577 84 4 2 0 genus Polynucleobacter 913 44013 1 430 Polynucleobacter asymbioticus 576611 species 0 1 576610 Polynucleobacter necessarius 145 1 0 species 1835254 Polynucleobacter duraquae 336 1 species 0 213 5 genus 0 48736 1 Ralstonia 10785 305 Ralstonia solanacearum 4956 1 0 species Ralstonia insidiosa 1670 190721 1 0 species species 0 1 2411 Ralstonia pickettii 329 1535 Ralstonia mannitolilytica 105219 0 species 1 9 538 genus 0 Cupriavidus 14120 106589 1 1 0 species Cupriavidus metallidurans 1251 119219 106590 Cupriavidus necator 2700 1 0 species 1 species 0 Cupriavidus basilensis 1557 68895 Cupriavidus gilardii 1236 82541 1 species 0 species 0 1 248026 1203 Cupriavidus pinatubonensis 2 0 no rank 2640874 3532 876364 Cupriavidus sp. USMAA2-4 1986 1 species 0 species 0 1 1389192 1546 Cupriavidus sp. USMAHM13 367825 2103 Cupriavidus sp. USMAA1020 0 species 1 genus 0 12 349 1 1822464 11643 Paraburkholderia 1006 Paraburkholderia fungorum 134537 species 0 1 36873 853 Paraburkholderia xenovorans 0 species 1 Paraburkholderia aromaticivorans 1015 2026199 1 species 0 Paraburkholderia terrae 997 311230 1 species 0 872 2615204 0 no rank 1 Paraburkholderia sp. SOS3 872 1926494 1 species 0 0 species 1 1218 Paraburkholderia hospita 169430 1 0 species 252970 Paraburkholderia phenoliruptrix 946 948107 Paraburkholderia sprentiae 895 1 species 0 75105 Paraburkholderia caribensis 1331 1 0 species species 0 1 261302 815 Paraburkholderia phytofirmans species 0 1 148447 1346 Paraburkholderia phymatum 10 172 0 genus 93217 1 Pandoraea 7471 0 species 1 676 Pandoraea thiooxydans 445709 species 0 1 748 Pandoraea faecigallinarum 656179 Pandoraea pulmonicola 872 93221 1 species 0 Pandoraea pnomenusa 866 93220 1 species 0 573737 Pandoraea oxalativorans 988 1 0 species 656178 730 Pandoraea vervacti 0 species 1 912 Pandoraea norimbergensis 93219 0 species 1 species 0 1 93222 708 Pandoraea sputorum Pandoraea apista 799 93218 1 species 0 1 0 genus 1827195 987 987 Burkholderia sp. RPE64 758793 species 0 1 1 32008 41363 Burkholderia genus 0 41 1971 1 0 species 41899 Burkholderia plantarii 1473 0 no rank 11 7800 2613784 1 0 species 1740162 Burkholderia sp. Bp5365 554 1 species 0 Burkholderia sp. PAMC 26561 641 1795043 640512 828 Burkholderia sp. CCGE1003 0 species 1 species 0 1 1795874 606 Burkholderia sp. PAMC 28687 1 species 0 416344 Burkholderia sp. KJ006 473 1468409 Burkholderia sp. 2002721687 591 1 0 species species 0 1 640510 860 Burkholderia sp. CCGE1001 920 Burkholderia sp. RPE67 758796 0 species 1 species 0 1 1000 Burkholderia sp. YI23 1097668 0 species 1 1740163 558 Burkholderia sp. Bp7605 Burkholderia sp. HB1 769 1678678 1 0 species 0 species 1 2359 Burkholderia glumae 337 19986 87882 0 species group 19 503 Burkholderia diffusa 488732 species 0 1 Burkholderia ubonensis 1748 101571 1 0 species 488731 Burkholderia seminalis 478 1 species 0 265293 [Pseudomonas] mesoacidophila 830 1 species 0 1 0 species Burkholderia stabilis 1004 95485 1 0 species Burkholderia cepacia 3279 292 1 0 species Burkholderia multivorans 1702 87883 0 species 1 60552 780 Burkholderia vietnamiensis 893 Burkholderia lata 482957 0 species 1 1 0 species 152480 Burkholderia ambifaria 900 0 species 1 663 Burkholderia latens 488446 525 Burkholderia dolosa 152500 0 species 1 488447 613 Burkholderia contaminans 0 species 1 1 0 species Burkholderia metallica 486 488729 1 species 0 95486 Burkholderia cenocepacia 3439 1 0 species 1207504 Burkholderia pseudomultivorans 701 1 0 species Burkholderia territorii 288 1503055 60550 Burkholderia pyrrocinia 441 1 species 0 1503054 713 Burkholderia stagnalis 0 species 1 5403 111527 7 species group 0 0 species 1 1637841 476 Burkholderia sp. MSMB0852 1 species 0 13373 Burkholderia mallei 497 1 0 species Burkholderia thailandensis 1398 57975 342113 541 Burkholderia oklahomensis species 0 1 1553 Burkholderia pseudomallei 28450 0 species 1 486 Burkholderia sp. MSMB617WGS 1637831 species 0 1 Burkholderia sp. MSMB0266 452 1637837 1 species 0 1 species 0 28095 Burkholderia gladioli 2371 1 0 genus 428 2571159 428 Paraburkholderia rhizoxinica 412963 species 0 1 64101 Comamonadaceae 1 80864 0 family 1068 58 0 genus 2 27 1 174951 3143 Ramlibacter Ramlibacter tataouinensis 3116 94132 1 species 0 2 genus 0 1759 2490452 1 0 species Comamonadaceae bacterium B1 994 1458426 Comamonadaceae bacterium A1 765 1458425 1 0 species 1 238749 1245 Diaphorobacter genus 0 2 3 0 species 1 1546149 1242 Diaphorobacter polyhydroxybutyrativorans 1 28065 4122 Rhodoferax genus 0 5 47 species 0 1 1246 Rhodoferax koreense 1842727 1 species 0 Rhodoferax ferrireducens 793 192843 81479 811 Rhodoferax antarcticus 0 species 1 Rhodoferax saidenbachensis 1225 1484693 1 species 0 Comamonas 6156 283 1 136 4 0 genus 285 2986 Comamonas testosteroni 0 species 1 1 species 0 Comamonas serinivorans 1421 1082851 225992 1613 Comamonas kerstersii species 0 1 2 32 genus 0 352450 1 Simplicispira 953 0 species 1 921 Simplicispira sp. SC1-8 2109915 0 genus 367 9 1 12916 10746 Acidovorax 0 species 1 1240 Acidovorax citrulli 80869 1 species 0 80867 Acidovorax avenae 1469 0 species 1 721785 1100 Acidovorax ebreus 4 no rank 0 5373 2684926 1842533 Acidovorax sp. RAC01 1324 1 species 0 0 species 1 358220 1520 Acidovorax sp. KKS102 1405 Acidovorax sp. JS42 232721 0 species 1 1124 Acidovorax sp. T1 1858609 0 species 1 1 species 0 553814 Acidovorax sp. NA3 1197 0 genus 5 317 1 80865 8665 Delftia 2 no rank 0 4225 2613839 Delftia sp. HK171 2067 1920191 1 0 species 742013 2158 Delftia sp. Cs1-4 0 species 1 Delftia tsuruhatensis 2094 180282 1 species 0 1 species 0 80866 Delftia acidovorans 2029 1 genus 0 2678886 1374 2116657 1374 Melaminivora sp. SC2-7 0 species 1 0 genus 3 24 2903 Ottowia 1 219181 0 no rank 1 2645081 1273 1273 Ottowia sp. oral taxon 894 1658672 species 0 1 2109914 1606 Ottowia sp. KADR8-3 0 species 1 657 Candidatus Symbiobacter 1 1436289 genus 0 6 2 651 Candidatus Symbiobacter mobilis 1436290 species 0 1 1 34072 8498 Variovorax 0 genus 200 5 436515 Variovorax boronicumulans 1651 1 0 species 663243 2824 2 0 no rank 2126319 Variovorax sp. PMC12 2112 1 species 0 1795631 Variovorax sp. PAMC 28711 712 1 0 species species 0 1 3823 Variovorax paradoxus 34073 665874 1 Limnohabitans 1175 3 3 0 genus 0 no rank 2 1172 2626134 1678128 825 Limnohabitans sp. 63ED37-2 0 species 1 Limnohabitans sp. 103DPR2 347 1678129 1 0 species 4426 Hydrogenophaga 1 47420 genus 0 4 42 2 0 no rank 2610897 2992 795665 Hydrogenophaga sp. PBC 1708 1 0 species Hydrogenophaga sp. RAC07 1284 1842537 1 0 species 1392 Hydrogenophaga crassostreae 1763535 0 species 1 1075 364316 genus 0 1 0 species 1 364317 1075 Verminephrobacter eiseniae 13 3 0 genus 52972 1 Polaromonas 2631 no rank 0 1 1361 2638319 1361 Polaromonas sp. JS666 296591 0 species 1 Polaromonas naphthalenivorans 1257 216465 1 0 species 1 1649468 1694 Melaminivora genus 0 48 2 0 no rank 1 1646 2641902 1646 Melaminivora sp. SC2-9 2109913 0 species 1 Alicycliphilus 1811 201096 1 2 8 genus 0 species 0 1 1803 Alicycliphilus denitrificans 179636 43 335 family 0 Alcaligenaceae 47855 506 1 17 809 genus 0 517 1 Bordetella 21299 1 species 0 Bordetella hinzii 1311 103855 Bordetella genomosp. 9 1159 1416803 1 species 0 1306 Bordetella genomosp. 8 1416806 0 species 1 Bordetella pseudohinzii 1346 1331258 1 species 0 0 species 1 521 787 Bordetella avium 463025 Bordetella bronchialis 1443 1 species 0 1289 Bordetella trematum 123899 0 species 1 1 no rank 0 2630031 1157 1697043 1157 Bordetella sp. H567 0 species 1 0 species 1 1394 Bordetella genomosp. 6 463024 1 species 0 35814 Bordetella holmesii 660 1138 Bordetella flabilis 463014 0 species 1 519 Bordetella parapertussis 1416 1 0 species 1 species 0 Bordetella petrii 973 94624 0 species 1 518 2599 Bordetella bronchiseptica 1 0 species Bordetella pertussis 1100 520 species 0 1 463040 1412 Bordetella genomosp. 13 507 1 Alcaligenes 1550 2 28 genus 0 0 species 1 511 1522 Alcaligenes faecalis 359336 1 Castellaniella 1602 2 110 genus 0 75697 Castellaniella defragrans 1492 1 0 species 90243 750 genus 0 1 species 0 1 750 Oligella urethralis 90245 Basilea 685 1472344 1 8 2 genus 0 677 Basilea psittacipulmonis 1472345 0 species 1 2 2 0 genus Pusillimonas 822 305976 1 2640016 820 1 no rank 0 Pusillimonas sp. T7-7 820 1007105 1 0 species 16316 Achromobacter 1 222 genus 0 518 6 1 species 0 32002 Achromobacter denitrificans 3542 217203 2853 Achromobacter spanius species 0 1 85698 6419 Achromobacter xylosoxidans species 0 1 2626865 1649 0 no rank 1 1758194 Achromobacter sp. AONIH1 1649 1 species 0 1 species 0 Achromobacter insolitus 1335 217204 3 4 0 genus 290425 1 Advenella 1421 1 0 species 302406 Advenella mimigardefordensis 561 856 Advenella kashmirensis 310575 species 0 1 Orrella 1851 1921582 1 2 42 genus 0 Orrella dioscoreae 1809 1851544 1 species 0 2 2 genus 0 Paenalcaligenes 394 1100891 1 Paenalcaligenes hominis 392 643674 1 0 species 3 2 genus 0 29574 1 Taylorella 830 29575 387 Taylorella equigenitalis species 0 1 84590 Taylorella asinigenitalis 441 1 species 0 17 no rank 0 14405 224471 0 genus 2 32 1 316612 1464 Methylibium 1432 Methylibium petroleiphilum 105560 0 species 1 genus 0 57 2 1 88 1304 Leptothrix 1 0 species Leptothrix cholodnii 1247 34029 28067 1 Rubrivivax 2230 2 52 genus 0 Rubrivivax gelatinosus 2178 28068 1 species 0 genus 0 2 51 1 93681 1970 Roseateles 76731 1919 Roseateles depolymerans 0 species 1 Mitsuaria 1543 65047 1 2 51 genus 0 2648776 1492 1 no rank 0 1658665 1492 Mitsuaria sp. 7 0 species 1 0 genus 2 44 1331 Thiomonas 1 32012 0 species 1 926 1287 Thiomonas intermedia 2 20 0 genus Paucibacter 1488 318147 1 1468 2642959 0 no rank 1 1 0 species Paucibacter sp. KCTC 42545 1468 1768242 0 species 1 413882 1294 [Polyangium] brachysporum genus 0 2 73 1781 Rhizobacter 1 212743 species 0 1 946333 1708 Rhizobacter gummiphilus class 0 6 6 1807 Zetaproteobacteria 1 580370 1801 Mariprofundales 1 580371 0 order 5 9 Mariprofundaceae 1792 580372 1 1 4 family 0 genus 0 3 4 1 377315 1791 Mariprofundus 934 Mariprofundus aestuarium 1921086 0 species 1 species 0 1 1921087 853 Mariprofundus ferrinatatus 1807140 1740 class 0 6 225057 1 Acidithiobacillales 1740 6 32 0 order 25 5 0 family 225058 1 Acidithiobacillaceae 1708 119977 1 Acidithiobacillus 1683 8 4 0 genus 1 species 0 33059 Acidithiobacillus caldus 514 0 species 1 160808 614 Acidithiobacillus ferrivorans 547 Acidithiobacillus ferrooxidans 920 0 species 1 204855 68525 0 subphylum 195 248 73 class 0 Epsilonproteobacteria 96760 29547 1 95004 Campylobacterales 1 213849 order 0 66 4080 15 2 family 0 Helicobacteraceae 5424 72293 1 genus 0 5 12 5101 Helicobacter 1 209 37372 571 Helicobacter bilis species 0 1 species 0 1 282 Helicobacter cinaedi 213 212 Helicobacter acinonychis 81 1 species 0 Helicobacter felis 92 214 1 0 species 1 species 0 Helicobacter mustelae 400 217 76936 239 Helicobacter typhlonius species 0 1 1 species 0 32025 Helicobacter hepaticus 432 0 species 1 479 Helicobacter cetorum 138563 257 2593540 1 no rank 0 257 Helicobacter sp. MIT 01-6242 222136 0 species 1 species 0 1 295 Helicobacter himalayensis 1591088 1 species 0 210 Helicobacter pylori 1968 1 2 0 genus Wolinella 321 843 1 species 0 1 320 Wolinella succinogenes 844 family 0 5 1925 2771472 1 269260 885 Nitratifractor genus 0 9 2 species 0 1 269261 876 Nitratifractor salsuginis 1040 Sulfurovum 1 265570 0 genus 3 7 no rank 0 1 2646778 639 Sulfurovum sp. NBC37-1 639 387093 1 0 species 394 Sulfurovum lithotrophicum 206403 0 species 1 2155 2771471 4 0 family 286130 603 0 genus 1 148813 603 Sulfuricurvum kujiense 0 species 1 genus 0 4 3 1 202746 1552 Sulfurimonas species 0 1 39766 679 Sulfurimonas denitrificans Sulfurimonas autotrophica 869 202747 1 0 species 41 8119 0 family Campylobacteraceae 81420 72294 1 0 genus 26 1380 1 194 60523 Campylobacter 0 species 1 522485 532 Campylobacter avium 76517 485 Campylobacter hominis species 0 1 species 0 1 260714 1090 Campylobacter insulaenigrae 1 species 0 Campylobacter volucris 538 1031542 1 species 0 Campylobacter gracilis 498 824 0 species 1 13507 Campylobacter jejuni 197 Campylobacter peloridis 1030 488546 1 0 species 28898 Campylobacter helveticus 381 1 0 species 1 species 0 195 Campylobacter coli 24678 4 0 no rank 2375 2593542 1 0 species Campylobacter sp. RM6137 318 1660073 587 Campylobacter sp. RM12175 1660076 0 species 1 1660074 Campylobacter sp. RM8964 578 1 species 0 1500960 Campylobacter sp. RM16704 892 1 0 species 1244531 Campylobacter iguaniorum 570 1 species 0 2363 Campylobacter lari 201 species 0 1 Campylobacter subantarcticus 1001 497724 1 species 0 Campylobacter cuniculorum 592 374106 1 species 0 1965231 Campylobacter pinnipediorum 1694 1 species 0 species 0 1 199 861 Campylobacter concisus 75658 Campylobacter lanienae 1304 1 species 0 1 0 species Campylobacter hyointestinalis 583 198 1 species 0 Campylobacter curvus 350 200 1 0 species 206 Campylobacter sputorum 1666 196 2045 Campylobacter fetus 0 species 1 Campylobacter ureolyticus 1000 827 1 0 species Sulfurospirillum 5042 57665 1 11 9 0 genus 2381 2618290 3 no rank 0 220622 Sulfurospirillum sp. JPD-1 651 1 0 species 1581011 Sulfurospirillum sp. UCH001 1025 1 species 0 1986224 Sulfurospirillum sp. SL2-1 705 1 0 species 66821 Sulfurospirillum multivorans 525 1 0 species 1 species 0 Sulfurospirillum cavolei 348 366522 Sulfurospirillum halorespirans 669 194424 1 species 0 1 0 species 65553 Sulfurospirillum deleyianum 522 species 0 1 44674 586 Sulfurospirillum barnesii 7736 2321108 5 no rank 0 2321207 1839 0 no rank 1 0 species 1 944547 1839 Arcobacter sp. L 15 3 genus 0 28196 1 Arcobacter 4099 Arcobacter butzleri 2318 28197 1 species 0 species 0 1 1766 Arcobacter nitrofigilis 28199 1798 2321187 1 0 genus species 0 1 1850254 1798 Arcobacter sp. LPB0137 order 0 6 1 1 235899 1508 Nautiliales 370 2795691 2 family 0 Nitratiruptor 370 269258 1 13 2 0 genus 1 no rank 0 357 2624044 Nitratiruptor sp. SB155-2 357 387092 1 0 species 0 family 3 6 1137 Nautiliaceae 1 224467 1 191291 1131 Nautilia genus 0 16 2 0 species 1 244787 1115 Nautilia profundicola class 0 293 122 108095 Deltaproteobacteria 1 28221 213113 1 Desulfurellales 1532 2 4 order 0 117942 1 Desulfurellaceae 1530 3 2 family 0 33001 915 1 0 genus 33002 Desulfurella acetivorans 915 1 0 species 84404 613 1 0 genus Hippea maritima 613 84405 1 0 species 0 order 4 17 1 453227 2185 Desulfarculales 453228 1 Desulfarculaceae 2168 45 3 family 0 453229 1 Desulfarculus 2123 2 28 genus 0 453230 Desulfarculus baarsii 2095 1 0 species 0 order 17 82 1 213118 9601 Desulfobacterales 5210 Desulfobacteraceae 1 213119 0 family 9 24 2295 1 Desulfobacterium 929 1 2 genus 0 1 0 species Desulfobacterium autotrophicum 928 2296 1 896 2527 Desulfococcus 0 genus 8 3 1 species 0 897 Desulfococcus multivorans 1386 0 species 1 1133 Desulfococcus oleovorans 181663 28222 997 0 genus 1 Desulfobacula toluolica 997 28223 1 species 0 Desulfatibacillum 733 218207 1 4 2 genus 0 0 species 1 259354 729 Desulfatibacillum alkenivorans family 0 28 7 4309 Desulfobulbaceae 1 213121 3 2 0 genus 427922 1 Desulfurivibrio 1025 427923 1022 Desulfurivibrio alkaliphilus species 0 1 1811 Desulfobulbus 1 893 genus 0 8 2 1986146 1803 Desulfobulbus sp. ORNL 0 species 1 109168 587 genus 0 1 1 0 species Desulfotalea psychrophila 587 84980 1 0 genus 53318 858 0 species 1 65555 858 Desulfocapsa sulfexigens 1 213115 31432 Desulfovibrionales order 0 328 25 2566 Desulfomicrobiaceae 1 213116 0 family 4 82 2484 Desulfomicrobium 1 898 0 genus 3 22 132132 1104 Desulfomicrobium orale species 0 1 1 species 0 Desulfomicrobium baculatum 1358 899 Desulfovibrionaceae 28042 194924 1 250 17 family 0 genus 0 1 652 41707 1 species 0 Lawsonia intracellularis 652 29546 Desulfovibrio 19444 872 1 9 224 0 genus 1 species 0 881 Desulfovibrio vulgaris 4202 no rank 0 1 1255 2593640 1 species 0 631220 Desulfovibrio sp. G11 1255 0 species 1 516 Candidatus Desulfovibrio trichonymphae 1725232 0 species 1 2062 Desulfovibrio magneticus 184917 Desulfovibrio fairfieldensis 2499 44742 1 0 species Desulfovibrio alaskensis 1150 58180 1 species 0 Desulfovibrio piger 3860 901 1 0 species species 0 1 876 3676 Desulfovibrio desulfuricans 1 0 genus 2582840 1521 species 0 1 873 1521 Desulfovibrio africanus 1 2035811 5063 Pseudodesulfovibrio genus 0 4 48 0 species 1 1716143 2283 Pseudodesulfovibrio indicus 1931 Pseudodesulfovibrio aespoeensis 182210 species 0 1 57320 801 Pseudodesulfovibrio profundus species 0 1 1 genus 0 1112 2794998 1 0 species 880 Desulfovibrio salexigens 1112 1 213117 496 Desulfohalobiaceae family 0 3 2 45662 1 Desulfohalobium 494 4 2 genus 0 490 Desulfohalobium retbaense 45663 0 species 1 1 213462 3149 Syntrophobacterales 0 order 10 7 Syntrophaceae 1857 213468 1 6 20 0 family 0 genus 1 2 1 60892 490 Desulfobacca 60893 489 Desulfobacca acetoxidans 0 species 1 0 genus 1 43773 773 1 0 species Syntrophus aciditrophicus 773 316277 genus 0 3 2 574 Desulfomonile 1 2357 1 0 species 2358 Desulfomonile tiedjei 571 3 7 0 family 213465 1 Syntrophobacteraceae 1285 0 genus 2 2 1278 Syntrophobacter 1 29526 0 species 1 119484 1276 Syntrophobacter fumaroxidans 345 24 order 0 69541 1 Desulfuromonadales 23471 15406 Geobacteraceae 1 213422 0 family 14 157 2 2 genus 0 Geoalkalibacter 937 392332 1 1 0 species 483547 Geoalkalibacter subterraneus 935 Geobacter 14312 28231 1 11 321 0 genus 1 0 species 313985 Geobacter lovleyi 1643 Geobacter uraniireducens 1050 351604 1 0 species 1 species 0 345632 Geobacter pickeringii 1688 225194 1419 Geobacter bemidjiensis species 0 1 28232 Geobacter metallireducens 987 1 0 species 35554 Geobacter sulfurreducens 1386 1 species 0 2 no rank 0 2627627 3461 species 0 1 443143 1973 Geobacter sp. M18 1 species 0 Geobacter sp. M21 1488 443144 1340425 1349 Geobacter anodireducens species 0 1 0 species 1 1203471 1008 Geobacter daltonii 7720 Desulfuromonadaceae 1 213421 family 0 9 128 Pelobacter 5014 18 1 34 5 genus 0 1023 2620299 no rank 0 1 1842532 1023 Pelobacter sp. SFB93 0 species 1 species 0 1 1238 Pelobacter acetylenicus 29542 0 species 1 29543 2043 Pelobacter propionicus 1 0 species Pelobacter carbinolicus 676 19 genus 0 26 3 2578 Desulfuromonas 1 890 1 no rank 0 2614637 1393 0 species 1 1393 Desulfuromonas sp. DDH964 1823759 1603606 1159 Desulfuromonas soudanensis 0 species 1 36432 Myxococcales 1 29 0 order 37 526 0 suborder 26 27979 80811 59 9 family 0 Myxococcaceae 13581 31 1 Myxococcus 8905 32 1 5 390 genus 0 1 0 species 83455 Myxococcus stipitatus 1805 33 3446 Myxococcus fulvus 0 species 1 Myxococcus hansupus 1715 1297742 1 0 species 0 species 1 1549 Myxococcus xanthus 34 genus 0 3 111 4617 Corallococcus 1 83461 1 species 0 184914 Corallococcus coralloides 2562 1 0 species Myxococcus macrosporus 1944 35 Archangiaceae 8253 39 1 133 9 family 0 1 47 2457 Archangium genus 0 4 2 2453 Archangium gephyra 48 species 0 1 12 2 0 genus 42 1 Cystobacter 1941 43 Cystobacter fuscus 1929 1 species 0 1634 Stigmatella 1 40 genus 0 2 25 41 1609 Stigmatella aurantiaca 0 species 1 44 1 Melittangium 2088 2 12 genus 0 species 0 1 83453 2076 Melittangium boletus 1524215 1 Anaeromyxobacteraceae 5070 24 5 family 0 0 genus 185 4 1 161492 5046 Anaeromyxobacter 2608 2620896 no rank 0 2 species 0 1 447217 1220 Anaeromyxobacter sp. K Anaeromyxobacter sp. Fw109-5 1388 404589 1 0 species species 0 1 2253 Anaeromyxobacter dehalogenans 161493 13 3 0 family Vulgatibacteraceae 1075 1524213 1 16 2 0 genus Vulgatibacter 1062 1524214 1 1046 Vulgatibacter incomptus 1391653 0 species 1 224462 1818 3 0 suborder 0 family 11 3 1 224464 1818 Kofleriaceae 162027 1 Haliangium 1807 2 16 genus 0 1 species 0 80816 Haliangium ochraceum 1791 7 suborder 0 80812 6109 Sandaracinaceae 711 1055686 1 23 3 family 0 1055688 1 Sandaracinus 688 37 2 genus 0 species 0 1 927083 651 Sandaracinus amylolyticus 5398 Polyangiaceae 1 49 0 family 4 16 1293 50 1 genus 0 1 0 species Chondromyces crocatus 1293 52 0 genus 81 2 1 39643 4089 Sorangium species 0 1 4008 Sorangium cellulosum 56 342647 Alphaproteobacteria 1 28211 0 class 1113 552 2800059 855 0 order 2 0 family 2 2800061 855 0 genus 12 2 1 74317 855 Maricaulis 0 species 1 843 Maricaulis maris 74318 255473 184 0 order 3 0 family 3 8 184 Parvularculaceae 1 255474 1 208215 176 Parvularcula 0 genus 2 2 208216 Parvularcula bermudensis 174 1 species 0 0 order 89 431 1 204455 61369 Rhodobacterales Rhodobacteraceae 60938 31989 1 1269 88 0 family genus 0 19 2 1 367771 1050 Marinovum 42444 Marinovum algicola 1031 1 0 species 1 0 genus Thalassococcus 3 436357 1 2 genus 0 188905 1 Jannaschia 597 2645469 596 1 no rank 0 1 species 0 290400 Jannaschia sp. CCS1 596 Pannonibacter 1876 227873 1 29 2 0 genus Pannonibacter phragmitetus 1847 121719 1 0 species 9 155 genus 0 Paracoccus 9715 265 1 Paracoccus aminovorans 1309 34004 1 species 0 Paracoccus aminophilus 1164 34003 1 0 species 0 species 1 1776 Paracoccus yeei 147645 1945662 871 Paracoccus contaminans species 0 1 no rank 0 1 1013 246570 1 species 0 Paracoccus sp. BM15 1013 1529068 species 0 1 966 Paracoccus sp. CBA4604 2065379 1077935 1151 Paracoccus zhejiangensis 0 species 1 1 species 0 266 Paracoccus denitrificans 1310 3 10 0 genus Ruegeria 2012 97050 1 843 2625375 0 no rank 1 292414 843 Ruegeria sp. TM1040 0 species 1 Ruegeria pomeroyi 1159 89184 1 0 species 5 2 genus 0 Tateyamaria 507 299261 1 1 species 0 299262 Tateyamaria omphalii 502 genus 0 1 415 1759396 0 no rank 1 2622455 415 0 species 1 415 Marivivens sp. JLT3646 1920883 genus 0 1 816 1649279 species 0 1 816 Ruegeria mobilis 379347 0 genus 1 12 Loktanella 245186 2 1 0 genus 159345 1 Roseibacterium 827 Roseibacterium elongatum 826 159346 1 species 0 285107 485 genus 0 1 Thioclava nitratireducens 485 1915078 1 0 species Roseobacter 1030 2433 1 3 4 genus 0 1 0 species 42443 Roseobacter litoralis 539 2434 487 Roseobacter denitrificans 0 species 1 genus 0 3 21 1 92944 1665 Ketogulonicigenium 0 species 1 92947 784 Ketogulonicigenium robustum species 0 1 860 Ketogulonicigenium vulgare 92945 genus 0 1 2 350 Planktomarina 1 1284657 1 species 0 Planktomarina temperata 349 1284658 1240 58840 no rank 0 2 1904441 577 Rhodobacteraceae bacterium 0 species 1 species 0 1 2033435 663 Rhodobacteraceae bacterium QY30 1 genus 0 309512 865 865 Dinoroseobacter shibae 215813 0 species 1 Leisingera 961 191028 1 2 2 genus 0 species 0 1 959 Leisingera methylohalidivorans 133924 2211641 697 1 genus 0 245188 697 Loktanella vestfoldensis 0 species 1 1 2 genus 0 74032 1 Antarctobacter 854 853 Antarctobacter heliothermus 74033 0 species 1 0 genus 1 610 119541 610 Rhodobaca barguzinensis 441209 0 species 1 0 genus 38 4 3430 Rhodovulum 1 34008 1 species 0 Rhodovulum sulfidophilum 1685 35806 0 no rank 2 2631432 1707 1564506 Rhodovulum sp. P5 863 1 0 species 308754 Rhodovulum sp. MB263 844 1 species 0 genus 0 50 5 1 302485 6442 Phaeobacter 1580596 Phaeobacter piscinae 1750 1 species 0 Phaeobacter inhibens 2404 221822 1 0 species Phaeobacter gallaeciensis 1757 60890 1 0 species Phaeobacter porticola 481 1844006 1 species 0 5402 Rhodobacter 1 1060 genus 0 34 5 0 no rank 2 1543 196779 866 Rhodobacter sp. CZR27 2033869 species 0 1 Rhodobacter sp. LPB0142 677 1850250 1 species 0 1063 Rhodobacter sphaeroides 2673 1 species 0 1152 Rhodobacter capsulatus 1061 species 0 1 0 genus 2 5 632 Roseovarius 1 74030 0 species 1 215743 627 Roseovarius mucosus 1579315 326 genus 0 1 1 species 0 1579316 Halocynthiibacter arcticus 326 Labrenzia 2938 478070 1 4 67 genus 0 2003 2648686 0 no rank 2 0 species 1 1674922 869 Labrenzia sp. CP4 0 species 1 1134 Labrenzia sp. VG12 2021862 1 0 species 187304 Labrenzia aggregata 868 1147 Confluentimicrobium 1 1609958 0 genus 2 21 2643318 1126 1 0 no rank Confluentimicrobium sp. EMB200-NS6 1126 1609966 1 species 0 genus 0 2 263377 2409 1229727 Thiobacimonas profunda 1260 1 0 species 1 0 no rank 2640570 1149 1 species 0 1792508 Yangia sp. CCB-MM3 1149 0 genus 2 18 1 360528 1162 Pelagibaca 1 species 0 1250539 Pelagibaca abyssi 1144 1 875170 3175 Celeribacter genus 0 5 14 species 0 1 1411902 1001 Celeribacter manganoxidans 0 species 1 1397108 339 Celeribacter marinus 0 species 1 1758178 980 Celeribacter ethanolicus 1208324 Celeribacter indicus 841 1 species 0 60136 1 Sulfitobacter 2084 11 3 genus 0 196795 883 no rank 0 1 1917485 883 Sulfitobacter sp. AM1-D1 0 species 1 0 species 1 1190 Sulfitobacter pseudonitzschiae 1402135 Defluviimonas 1234 1097466 1 16 2 genus 0 Defluviimonas alba 1218 1335048 1 species 0 4 2 genus 0 Octadecabacter 1081 53945 1 species 0 1 413 Octadecabacter arcticus 53946 0 species 1 372 Octadecabacter antarcticus 1217908 1 species 0 1458307 Octadecabacter temperatus 294 2 7 genus 0 58842 1 Sagittula 1620 2624628 1613 1 no rank 0 2009329 Sagittula sp. P11 1613 1 species 0 942 1921002 6 order 0 family 0 1 3 318 Candidatus Paracaedibacteraceae 1 1777752 Candidatus Paracaedibacter 317 1521255 1 1 2 genus 0 316 Candidatus Paracaedibacter acanthamoebae 91604 species 0 1 2100208 288 1 0 family 1 0 genus 1509243 288 Candidatus Nucleicultrix amoebiphila 288 1509244 1 0 species 0 family 1 2 1 44746 336 Holosporaceae 0 no rank 1 335 204454 endosymbiont of Acanthamoeba sp. UWC8 335 86106 1 species 0 1 54526 2939 Pelagibacterales order 0 8 11 365 2045213 1 0 genus Candidatus Fonsibacter ubiquis 365 1925548 1 species 0 1655514 1 Pelagibacteraceae 2563 6 7 family 0 1655516 1395 2 0 no rank 0 species 1 648 alpha proteobacterium HIMB59 744985 747 alpha proteobacterium HIMB5 859653 0 species 1 1 3 genus 0 Candidatus Pelagibacter 1161 198251 1 1 0 no rank 2647897 377 1002672 377 Candidatus Pelagibacter sp. IMCC9063 0 species 1 Candidatus Pelagibacter ubique 783 198252 1 species 0 1885 208 order 0 356 1 Rhizobiales 144736 0 family 7 26 4772 Xanthobacteraceae 1 335928 2 15 0 genus Starkeya 1260 152053 1 921 1245 Starkeya novella 0 species 1 Xanthobacter 1937 279 1 32 2 genus 0 0 species 1 1905 Xanthobacter autotrophicus 280 genus 0 33 2 1 6 1549 Azorhizobium Azorhizobium caulinodans 1516 7 1 0 species 41294 1 Bradyrhizobiaceae 25872 26 415 family 0 279 11 genus 0 374 1 Bradyrhizobium 13741 44255 Bradyrhizobium oligotrophicum 1221 1 0 species 1274631 Bradyrhizobium icense 873 1 0 species 1355477 2043 Bradyrhizobium diazoefficiens 0 species 1 7517 2631580 0 no rank 6 0 species 1 1119 Bradyrhizobium sp. 376 species 0 1 1268 Bradyrhizobium sp. CCGE-LA001 1223566 1179 Bradyrhizobium sp. BTAi1 288000 species 0 1 115808 Bradyrhizobium sp. ORS 285 1305 1 0 species 1 0 species Bradyrhizobium sp. ORS 278 1372 114615 1274 Bradyrhizobium sp. SK17 2057741 0 species 1 species 0 1 1808 Bradyrhizobium japonicum 375 1 40136 526 Oligotropha 0 genus 2 11 1 0 species Oligotropha carboxidovorans 515 40137 24 2 genus 0 1649510 1 Variibacter 449 Variibacter gotjawalensis 425 1333996 1 0 species Rhodopseudomonas 5961 1073 1 52 2 genus 0 Rhodopseudomonas palustris 5909 1076 1 0 species 0 genus 48 5 1 85413 4011 Bosea 2653178 2943 3 0 no rank species 0 1 1027 Bosea sp. AS-1 2015316 1792307 Bosea sp. PAMC 26642 776 1 0 species species 0 1 1842539 1140 Bosea sp. RAC05 species 0 1 1526658 1020 Bosea vaviloviae 1 911 769 Nitrobacter genus 0 7 3 1 0 species Nitrobacter winogradskyi 363 913 1 0 species 912 Nitrobacter hamburgensis 399 Rhodobiaceae 503 119043 1 2 3 family 0 1 256616 501 Parvibaculum genus 0 3 2 256618 498 Parvibaculum lavamentivorans species 0 1 52 614 0 family 82115 1 Rhizobiaceae 47080 23 2 0 genus 323620 1 Shinella 1427 1 no rank 0 1404 2643062 species 0 1 1404 Shinella sp. HZN7 879274 Liberibacter 1461 34019 1 9 6 0 genus 1273132 477 Liberibacter crescens 0 species 1 0 species 1 309868 457 Candidatus Liberibacter americanus Candidatus Liberibacter solanacearum 137 556287 1 0 species 1 species 0 Candidatus Liberibacter africanus 234 34020 34021 147 Candidatus Liberibacter asiaticus 0 species 1 33 0 no rank 227290 34871 7 221 0 genus 357 1 Agrobacterium 8917 1355 Agrobacterium vitis 373 0 species 1 2 0 no rank 1627 2632611 732 Agrobacterium sp. RAC06 1842536 species 0 1 1 0 species Agrobacterium sp. H13-3 895 861208 359 Agrobacterium rhizogenes 969 1 species 0 2 0 species group 4745 1183400 358 Agrobacterium tumefaciens 3829 1 species 0 1176649 916 Agrobacterium fabrum 0 species 1 2 1 genus 0 Neorhizobium 1464 1525371 1 0 species 1 1463 Neorhizobium galegae 399 genus 0 1513 24 1 379 24490 Rhizobium Rhizobium phaseoli 1380 396 1 species 0 species 0 1 398 1001 Rhizobium tropici no rank 0 18 2613769 10742 1703962 7 Rhizobium sp. N1341 species 0 1 Rhizobium sp. CIAT894 783 2020312 1 species 0 0 species 1 1571470 1172 Rhizobium sp. ACO-34A 0 species 1 771 Rhizobium sp. Y9 1914541 1703960 Rhizobium sp. N113 1 1 0 species 783 Rhizobium sp. IRBG74 424182 species 0 1 720 Rhizobium sp. NXC14 1981173 0 species 1 1 0 species Rhizobium sp. N741 6 1703967 2020311 Rhizobium sp. Kim5 606 1 species 0 Rhizobium sp. S41 919 1869170 1 0 species Rhizobium sp. N324 926 1703969 1 0 species 1 0 species 2020313 Rhizobium sp. TAL182 180 Rhizobium sp. IE4771 621 1301032 1 0 species 1 0 species Rhizobium sp. N1314 182 1703961 1048 Rhizobium sp. 10195 2028343 0 species 1 1 species 0 Rhizobium sp. NXC24 1060 2048897 species 0 1 775 Rhizobium sp. NT-26 1125847 species 0 1 1703966 182 Rhizobium sp. N731 1 0 species 384 Rhizobium leguminosarum 5722 1 species 0 56730 Rhizobium gallicum 1513 29449 2619 Rhizobium etli 0 species 1 no rank 0 10 227292 8707 genus 0 3 25 1791 Ensifer 1 106591 980 Ensifer adhaerens 106592 0 species 1 1 0 species Ensifer sojae 786 716925 0 genus 7 180 6916 Sinorhizobium 1 28105 1628 2613772 2 no rank 0 0 species 1 794846 571 Sinorhizobium sp. CCBAU 05631 1842534 Sinorhizobium sp. RAC02 1057 1 species 0 663276 1868 1 species group 0 380 1868 Sinorhizobium fredii species 0 1 1 0 species Sinorhizobium meliloti 1697 382 0 species 1 878 Sinorhizobium americanum 194963 110321 665 Sinorhizobium medicae species 0 1 Aurantimonadaceae 4598 255475 1 7 24 0 family 293088 1 Martelella 3629 4 72 genus 0 1148 2629616 0 no rank 1 686597 1148 Martelella sp. AD-3 species 0 1 Martelella endophytica 1375 1486262 1 0 species 1 species 0 Martelella mediterranea 1034 293089 genus 0 2 1 1 414371 945 Aureimonas no rank 0 1 2615206 944 1 species 0 1349819 Aureimonas sp. AU20 944 0 no rank 6 2250 119042 1 1572860 827 Hartmannibacter 0 genus 1 2 species 0 1 1482074 826 Hartmannibacter diazotrophicus 12 2 0 genus 1484898 1 Methyloceanibacter 656 1384459 Methyloceanibacter caenitepidi 644 1 species 0 genus 0 2 43 767 Pseudorhodoplanes 1 1734920 1235591 724 Pseudorhodoplanes sinuspersici species 0 1 13085 Phyllobacteriaceae 1 69277 0 family 90 20 274591 1 Hoeflea 851 3 2 genus 0 1 no rank 0 2614931 848 1 0 species Hoeflea sp. IMCC20628 848 1620421 686 Chelativorans 1 449972 genus 0 11 2 1 0 no rank 675 2643807 1 species 0 Chelativorans sp. BNC1 675 266779 245876 1 Nitratireductor 635 2 25 0 genus 472175 610 Nitratireductor basaltis species 0 1 13 2 0 genus 31988 1 Aminobacter 1159 83263 1146 Aminobacter aminovorans species 0 1 Mesorhizobium 9081 68287 1 295 9 genus 0 1 species 0 Mesorhizobium ciceri 1448 39645 Mesorhizobium japonicum 1296 2066070 1 species 0 1 species 0 Mesorhizobium amorphae 1085 71433 1670800 582 Mesorhizobium sp. B7 species 0 1 1089 Mesorhizobium australicum 536018 0 species 1 Mesorhizobium opportunistum 1053 593909 1 0 species Mesorhizobium loti 1051 381 1 0 species 1182 325217 1 no rank 0 species 0 1 1182 Mesorhizobium sp. WSM1497 278153 28100 1 Phyllobacterium 583 2 9 genus 0 species 0 1 574 Phyllobacterium zundukense 1867719 45404 1 Beijerinckiaceae 852 7 4 0 family 544 120652 1 0 genus 544 Methylocella silvestris 199596 0 species 1 1 532 301 Beijerinckia genus 0 1 2 300 Beijerinckia indica 533 species 0 1 73 20 0 family 118882 1 Brucellaceae 7052 genus 0 5 50 1 528 3663 Ochrobactrum 1 species 0 Ochrobactrum pituitosum 1126 571256 species 0 1 757 Ochrobactrum sp. A44 271865 0 species 1 837 Ochrobactrum anthropi 529 1 0 species Ochrobactrum pseudogrignonense 893 419475 14 957 0 genus Brucella 3316 234 1 Brucella microti 88 444163 1 species 0 1 species 0 Brucella abortus 176 235 0 species 1 36855 166 Brucella canis 29461 109 Brucella suis 0 species 1 Brucella ovis 69 236 1 0 species 1 species 0 981386 Brucella vulpis 259 120577 234 Brucella ceti species 0 1 29459 149 Brucella melitensis 0 species 1 4 0 no rank 883 2632610 species 0 1 183 Brucella sp. 09RB8471 1149952 Brucella sp. 09RB8910 414 1844051 1 species 0 1 species 0 1885919 Brucella sp. 141012304 228 species 0 1 58 Brucella sp. 2002734562 1891098 226 Brucella pinnipedialis 120576 0 species 1 1 119045 17548 Methylobacteriaceae family 0 177 15 15 2 0 genus Microvirga 1424 186650 1 Microvirga ossetica 1409 1882682 1 0 species 0 genus 3 2282523 5836 Methylobacterium zatmanii 752 29429 1 0 species 1 species 0 Methylobacterium extorquens 2991 408 species 0 1 223967 2093 Methylobacterium populi 1 407 10111 Methylobacterium 0 genus 9 431 1 species 0 418223 Methylobacterium phyllosphaerae 1137 114616 Methylobacterium nodulans 1063 1 0 species 2615210 3504 no rank 0 3 925818 966 Methylobacterium sp. AMS5 species 0 1 species 0 1 426117 1386 Methylobacterium sp. 4-46 1479019 Methylobacterium sp. C1 1152 1 0 species 1482 Methylobacterium aquaticum 270351 0 species 1 1 0 species 334852 Methylobacterium oryzae 1109 31998 1385 Methylobacterium radiotolerans 0 species 1 26 18 family 0 772 1 Bartonellaceae 6473 1 773 6447 Bartonella genus 0 129 17 species 0 1 370 Bartonella clarridgeiae 56426 241 Bartonella ancashensis 1318743 0 species 1 species 0 1 38323 453 Bartonella henselae Bartonella australis 238 388640 1 0 species 0 species 1 414 Bartonella grahamii 33045 1067 Bartonella apis 1686310 0 species 1 1 0 species Bartonella tribocorum 462 85701 1 0 species 774 Bartonella bacilliformis 232 390 Bartonella vinsonii 33047 0 species 1 Bartonella quintana 255 803 1 species 0 6 no rank 0 2645622 2196 515256 292 Bartonella sp. 1-1C 0 species 1 388 Bartonella sp. WD16.2 1933904 species 0 1 1 species 0 Bartonella sp. Raccoon60 270 1933912 1 0 species 1933910 Bartonella sp. A1379B 326 Bartonella sp. JB15 460 1933906 1 0 species 1 species 0 1933907 Bartonella sp. JB63 460 0 family 6 9 1 31993 1389 Methylocystaceae Methylosinus 568 425 1 32 2 genus 0 Methylosinus trichosporium 536 426 1 species 0 Methylocystis 812 133 1 12 3 genus 0 1 0 species 655015 Methylocystis bryophila 477 2625913 323 1 0 no rank 1 species 0 187303 Methylocystis sp. SC2 323 Chelatococcaceae 2063 2036754 1 4 30 family 0 1 28209 2033 Chelatococcus 0 genus 3 56 0 species 1 444444 953 Chelatococcus daeguensis 0 no rank 1 1024 2638111 1702325 1024 Chelatococcus sp. CO-6 0 species 1 0 family 19 86 1 45401 9314 Hyphomicrobiaceae 1082930 1 Pelagibacterium 789 2 4 0 genus 531813 785 Pelagibacterium halotolerans species 0 1 genus 0 27 4 1 81 2275 Hyphomicrobium 1 0 no rank 778 2619925 778 Hyphomicrobium sp. MC1 717785 species 0 1 1 species 0 53399 Hyphomicrobium denitrificans 707 Hyphomicrobium nitrativorans 763 1427356 1 0 species 3199 Devosia 1 46913 genus 0 80 4 no rank 0 3 3119 196773 2083786 648 Devosia sp. I507 species 0 1 1 0 species Devosia sp. A16 1355 1736675 1116 Devosia sp. H5989 1643450 0 species 1 1 119044 495 Filomicrobium 0 genus 1 2 0 species 1 1608628 494 Candidatus Filomicrobium marinum 0 genus 2 35 984 Rhodoplanes 1 29407 1 no rank 0 2619116 949 674703 Rhodoplanes sp. Z2-YC6860 949 1 species 0 1068 1 Rhodomicrobium 589 1 2 0 genus 1069 Rhodomicrobium vannielii 588 1 0 species 2 54 genus 0 59282 1 Blastochloris 897 0 species 1 1079 843 Blastochloris viridis 0 order 20 139 1 204458 14635 Caulobacterales 14496 Caulobacteraceae 1 76892 family 0 19 169 1 no rank 0 81440 271 1759059 Caulobacteraceae bacterium OTSz_A_272 271 1 species 0 101 6 0 genus 75 1 Caulobacter 7409 no rank 0 1 2118 2648921 2118 Caulobacter sp. K31 366602 species 0 1 69666 Caulobacter mirabilis 1015 1 0 species 88688 1062 Caulobacter segnis 0 species 1 155892 2288 Caulobacter vibrioides 0 species 1 69395 Caulobacter henricii 825 1 0 species 1 20 1394 Phenylobacterium genus 0 18 2 species 0 1 284016 1376 Phenylobacterium zucineum genus 0 2 29 803 Asticcacaulis 1 76890 Asticcacaulis excentricus 774 78587 1 0 species 1 41275 4450 Brevundimonas genus 0 125 7 species 0 1 74313 858 Brevundimonas subvibrioides 1 0 species 588932 Brevundimonas naejangsanensis 823 3 no rank 0 2010 2622653 1532555 Brevundimonas sp. DS20 702 1 species 0 0 species 1 493 Brevundimonas sp. GW460-12-10-14-LB2 1827469 Brevundimonas sp. LM2 815 1938605 1 species 0 Brevundimonas vesicularis 634 41276 1 species 0 46845 Sphingomonadales 1 204457 order 0 341 82 41297 1 Sphingomonadaceae 37337 518 59 family 0 genus 0 3 2 854 Rhizorhabdus 1 1649486 species 0 1 851 Rhizorhabdus dicambivorans 1850238 1 165696 2875 Novosphingobium 0 genus 5 69 0 no rank 1 571 2644732 1 0 species Novosphingobium sp. PP1Y 571 702113 48935 578 Novosphingobium aromaticivorans 0 species 1 Novosphingobium resinovorum 906 158500 1 species 0 205844 751 Novosphingobium pentaromativorans 0 species 1 1 0 genus 2685927 635 1921510 635 Sphingomonas sp. JJ-A5 species 0 1 13687 1 Sphingomonas 12506 15 252 0 genus Sphingomonas panacis 841 1560345 1 0 species 6 0 no rank 196159 4476 0 species 1 424 Sphingomonas sp. KC8 1030157 1144 Sphingomonas sp. NIC1 1961362 species 0 1 species 0 1 1938607 613 Sphingomonas sp. LM7 Sphingomonas sp. MM-1 747 745310 1 0 species species 0 1 887 Sphingomonas sp. LK11 1390395 661 Sphingomonas sp. Cra20 1327635 0 species 1 1 species 0 Sphingomonas hengshuiensis 745 1609977 1 species 0 1549858 Sphingomonas taxi 1267 1182 Sphingomonas melonis 152682 species 0 1 1034 Sphingomonas sanxanigenens 397260 species 0 1 2 1077 species 0 Sphingomonas wittichii 1858 160791 1 strain 0 1 1283312 781 Sphingomonas sp. DC-6 93064 Sphingomonas koreensis 851 1 species 0 genus 0 13 2 570 Citromicrobium 1 72173 1 no rank 0 2630544 557 Citromicrobium sp. JL477 557 1634516 1 species 0 1434046 1 Sphingorhabdus 1350 3 15 0 genus 1335 2614947 2 0 no rank 1 0 species 1806885 Sphingorhabdus sp. M41 786 0 species 1 2077182 549 Sphingorhabdus sp. YGSMI21 genus 0 8 2 627 Blastomonas 1 150203 1 0 no rank 619 2626550 1842535 619 Blastomonas sp. RAC04 0 species 1 genus 0 10 92 1 165697 5222 Sphingopyxis 0 species 1 267128 919 Sphingopyxis granuli species 0 1 367 Sphingopyxis alaskensis 117207 410 Sphingopyxis terrae 33052 species 0 1 1515612 Sphingopyxis fribergensis 434 1 0 species species 0 1 33050 1076 Sphingopyxis macrogoltabida 1924 2614943 4 0 no rank 1 species 0 Sphingopyxis sp. QXT-31 630 1357916 0 species 1 509 Sphingopyxis sp. MG 1866325 292913 411 Sphingopyxis sp. 113P3 species 0 1 1913578 374 Sphingopyxis sp. LPB0140 0 species 1 2709685 466 0 genus 1 266812 Sphingorhabdus flavimaris 466 1 0 species 165695 1 Sphingobium 10541 15 247 0 genus 0 species 1 332056 702 Sphingobium japonicum 1 species 0 76947 Sphingobium herbicidovorans 619 46429 870 Sphingobium chlorophenolicum 0 species 1 3953 2611147 0 no rank 6 0 species 1 729 Sphingobium sp. TKS 1315974 1843368 707 Sphingobium sp. RAC03 0 species 1 0 species 1 1029 Sphingobium sp. YBL2 484429 0 species 1 374 Sphingobium sp. MI1205 407020 Sphingobium sp. SYK-6 645 627192 1 species 0 1855519 469 Sphingobium sp. EP60837 0 species 1 Sphingobium indicum 886 332055 1 species 0 1673076 1012 Sphingobium hydrophobicum 0 species 1 658 Sphingobium cloacae 120107 0 species 1 0 species 1 13690 1031 Sphingobium yanoikuyae Sphingobium baderi 563 1332080 1 species 0 2 16 genus 0 541 1 Zymomonas 1173 0 species 1 542 1157 Zymomonas mobilis 0 family 188 22 9167 Erythrobacteraceae 1 335929 2800682 745 0 genus 1 645517 Altererythrobacter namhicola 745 1 0 species 1 1295327 1139 Croceicoccus 0 genus 32 3 0 species 1 450378 590 Croceicoccus marinus 1 species 0 1348774 Croceicoccus naphthovorans 517 1855416 831 2 genus 0 192812 Erythrobacter flavus 467 1 0 species 1 species 0 266951 Erythrobacter seohaensis 364 2800685 503 1 0 genus species 0 1 503 Altererythrobacter marensis 543877 0 genus 33 4 1 361177 1511 Altererythrobacter 476157 Altererythrobacter ishigakiensis 325 1 species 0 Altererythrobacter epoxidivorans 573 361183 1 0 species 1267766 580 Altererythrobacter atlanticus 0 species 1 genus 0 2 818 2800686 0 species 1 433 Altererythrobacter dongtanensis 692370 1982042 Altererythrobacter mangrovi 385 1 0 species 2 genus 0 2800681 845 1 species 0 502682 Erythrobacter gangjinensis 526 1648404 Erythrobacter atlanticus 319 1 0 species 0 no rank 6 2800788 2587 1111 1 Porphyrobacter 1014 15 3 genus 0 2683265 999 0 no rank 2 species 0 1 460 Porphyrobacter sp. LM 6 1896196 2023229 Porphyrobacter HT-58-2 539 1 species 0 3 55 genus 0 Erythrobacter 1573 1041 1 1 0 species Erythrobacter litoralis 932 39960 1 0 species Porphyrobacter neustonensis 586 1112 52 12 order 0 Rickettsiales 11476 766 1 family 0 22 2 5443 Anaplasmataceae 1 942 943 1 Ehrlichia 2524 16 6 genus 0 106178 1885 4 0 species group 1 0 species Ehrlichia chaffeensis 515 945 35795 293 Ehrlichia muris species 0 1 1 0 species Ehrlichia canis 481 944 1 0 species Ehrlichia ruminantium 596 779 106181 623 no rank 0 1 1 species 0 Ehrlichia sp. HF 623 391036 8 tribe 0 952 1855 Wolbachia 1855 953 1 8 8 genus 0 no rank 0 7 1847 2640676 Wolbachia endosymbiont of Cimex lectularius 281 246273 1 0 species 1 0 species 80849 Wolbachia endosymbiont of Brugia malayi 200 100901 Wolbachia endosymbiont of Onchocerca ochengi 160 1 species 0 234 Wolbachia endosymbiont of Drosophila melanogaster 163164 species 0 1 1 0 species Wolbachia endosymbiont of Onchocerca volvulus 134 77551 species 0 1 66084 317 Wolbachia sp. wRi 1 0 species 77038 Wolbachia endosymbiont of Drosophila simulans 521 218 768 genus 0 3 species 0 1 76 Anaplasma marginale 770 1 species group 0 106179 96 948 Anaplasma phagocytophilum 96 1 species 0 46 Anaplasma centrale 769 0 species 1 Neorickettsia 844 33993 1 1 4 0 genus 253 Neorickettsia risticii 950 0 species 1 951 Neorickettsia sennetsu 222 1 0 species 1 species 0 33994 Neorickettsia helminthoeca 368 1 no rank 0 1699067 569 569 Rickettsiales bacterium Ac37b 1528098 species 0 1 1328881 187 0 family 1 187 411566 genus 0 1 234827 187 Candidatus Midichloria mitochondrii 0 species 1 Rickettsiaceae 5265 775 1 27 3 0 family 25 tribe 0 4984 33988 1 780 4441 Rickettsia genus 0 23 522 species group 0 2 1129742 708 Rickettsia bellii 415 33990 1 species 0 1 species 0 Rickettsia canadensis 293 788 2047 114277 17 species group 0 0 species 1 530 Rickettsia australis 787 274 Rickettsia akari 786 0 species 1 species 0 1 64 Rickettsia parkeri 35792 Rickettsia conorii 23 781 1 0 species 1 species 0 1105106 Rickettsia philipii 15 34 Rickettsia africae 35788 species 0 1 Rickettsia amblyommatis 156 33989 1 0 species 33992 84 Rickettsia rhipicephali 0 species 1 1 0 species Rickettsia rickettsii 79 783 species 0 1 190 Rickettsia monacensis 109232 1 0 species 42862 Rickettsia felis 321 42 Rickettsia massiliae 35791 0 species 1 92 Rickettsia peacockii 47589 0 species 1 1 0 species Rickettsia japonica 46 35790 Rickettsia heilongjiangensis 44 226665 1 species 0 33991 Rickettsia montanensis 48 1 0 species species 0 1 5 Rickettsia slovaca 35794 114295 315 no rank 0 1 0 species 1 337479 315 Rickettsia endosymbiont of Bemisia tabaci 849 114292 2 0 species group Rickettsia prowazekii 448 782 1 0 species Rickettsia typhi 401 785 1 0 species 69474 1 Orientia 543 1 2 genus 0 784 Orientia tsutsugamushi 542 1 0 species 278 2115980 1 0 genus 1 0 species Candidatus Phycorickettsia trachydisci 278 2115978 600 65 0 order Rhodospirillales 51528 204441 1 19695 Acetobacteraceae 1 433 0 family 243 34 Parasaccharibacter 574 1602345 1 2 1 genus 0 species 0 1 1510841 573 Parasaccharibacter apium genus 0 5 78 1 1434011 3258 Komagataeibacter 1 0 species 33995 Komagataeibacter europaeus 573 1177712 623 Komagataeibacter medellinensis species 0 1 Komagataeibacter nataicola 655 265960 1 0 species species 0 1 28448 1329 Komagataeibacter xylinus Acetobacter 5246 434 1 8 48 genus 0 0 species 1 791 Acetobacter senegalensis 446692 452 Acetobacter oryzifermentans 1633874 species 0 1 1628 Acetobacter pasteurianus 438 0 species 1 1076596 581 Acetobacter persici 0 species 1 1 0 subgenus 627 151157 1 species 0 435 Acetobacter aceti 627 species 0 1 741 Acetobacter tropicalis 104102 0 species 1 65959 378 Acetobacter pomorum 1128 Acidiphilium 1 522 0 genus 3 55 0 species 1 573 Acidiphilium cryptum 524 1 0 species 62140 Acidiphilium multivorum 500 644 Asaia 1 91914 genus 0 10 2 91915 634 Asaia bogorensis 0 species 1 89583 1 Gluconacetobacter 931 24 2 0 genus 907 Gluconacetobacter diazotrophicus 33996 species 0 1 0 genus 3 37 2244 Gluconobacter 1 441 species 0 1 728 Gluconobacter albidus 318683 0 species 1 442 1479 Gluconobacter oxydans 153497 694 0 genus 1 species 0 1 153496 694 Kozakia baliensis 3 70 genus 0 Roseomonas 2651 125216 1 2617492 1371 no rank 0 1 1 0 species 2018065 Roseomonas sp. FDAARGOS_362 1371 257708 Roseomonas gilardii 1210 1 species 0 477 Neoasaia 1 320496 genus 0 2 6 471 Neoasaia chiangmaiensis 320497 species 0 1 genus 0 2 19 1605 Granulibacter 1 364409 1586 Granulibacter bethesdensis 364410 species 0 1 30 525 0 family Rhodospirillaceae 31233 41295 1 1 genus 0 579 1263978 1263979 579 Candidatus Endolissoclinum faulkneri species 0 1 1543705 1 Nitrospirillum 2751 2 7 genus 0 28077 2744 Nitrospirillum amazonense species 0 1 723 Magnetospira 1 1182780 genus 0 2 5 0 no rank 1 718 2685734 1 0 species 1288970 Magnetospira sp. QH-2 718 Pararhodospirillum 563 1612157 1 2 10 0 genus 1084 553 Pararhodospirillum photometricum 0 species 1 0 genus 26 2 1 1543704 1599 Niveispirillum 1612173 Niveispirillum cyanobacteriorum 1573 1 species 0 1081 1 Rhodospirillum 2640 36 3 genus 0 Rhodospirillum rubrum 917 1085 1 species 0 34018 Rhodospirillum centenum 1687 1 0 species 1 168934 2534 Thalassospira genus 0 3 16 220697 Thalassospira xiamenensis 1242 1 species 0 0 species 1 1276 Thalassospira sp. CSC3H3 2048283 0 genus 173 5 1 13134 6762 Magnetospirillum species 0 1 84159 1538 Magnetospirillum magneticum species 0 1 1821 Magnetospirillum gryphiswaldense 55518 2 no rank 0 2617991 3230 species 0 1 1639348 1682 Magnetospirillum sp. ME-1 1 species 0 1663591 Magnetospirillum sp. XM-1 1548 171436 1 Tistrella 1655 2 32 0 genus 171437 1623 Tistrella mobilis species 0 1 Haematospirillum 508 1804663 1 2 2 0 genus 1549855 506 Haematospirillum jordaniae 0 species 1 0 genus 166 5 1 191 10394 Azospirillum 0 species 1 192 3368 Azospirillum brasilense 1 0 species 1226968 Azospirillum humicireducens 1102 species 0 1 2524 Azospirillum thiophilum 528244 193 3234 Azospirillum lipoferum 0 species 1 597 Magnetococcales 1 1191478 0 order 3 1 family 0 2 2 1 1191479 596 Magnetococcaceae 0 genus 1 162171 594 594 Magnetococcus marinus 1124597 species 0 1 5 0 order 2800060 1359 69657 1 Hyphomonadaceae 1359 5 13 0 family 6 3 genus 0 Hyphomonas 1048 85 1 1 0 species Hyphomonas neptunium 610 81032 1 0 no rank 432 2630699 1906738 432 Hyphomonas sp. Mor2 0 species 1 1 0 genus 298 2723 1 0 species Hirschia baltica 298 2724 8 no rank 0 82117 4069 991903 1 Polymorphum 1213 11 2 0 genus 1 0 species 991904 Polymorphum gilvum 1202 32 2 0 genus Phreatobacter 1301 1632780 1 1 0 species 1868589 Phreatobacter sp. S-12 1269 62654 674 2 0 clade 1 2 0 genus Candidatus Puniceispirillum 674 767891 1 673 Candidatus Puniceispirillum marinum 767892 0 species 1 881 Micavibrio 1 213485 genus 0 2 1 349221 Micavibrio aeruginosavorus 880 1 0 species 0 phylum 7 200940 1956 7 8 0 class Thermodesulfobacteria 1956 67799 1 0 order 6 14 1 188710 1948 Thermodesulfobacteriales 188711 1 Thermodesulfobacteriaceae 1934 5 5 family 0 genus 0 2 1740 1211 Thermodesulfobacterium commune 466 1741 1 0 species 1 species 0 Thermodesulfobacterium geofontis 745 1295609 1 0 genus 444090 408 Caldimicrobium thiodismutans 408 1653476 1 0 species 310 241192 1 genus 0 171695 Thermodesulfatator indicus 310 1 species 0 200783 8467 21 0 phylum class 0 21 9 8467 Aquificae 1 187857 order 0 5 17 7121 Aquificales 1 32069 1 224027 2952 Hydrogenothermaceae family 0 4 22 0 genus 2 1905 212790 1 no rank 0 2619248 1372 436114 1372 Sulfurihydrogenibium sp. YO3AOP1 0 species 1 1 species 0 309806 Sulfurihydrogenibium azorense 533 182899 1025 1 0 genus Persephonella marina 1025 309805 1 0 species family 0 11 2 1 64898 3623 Aquificaceae 1 0 genus 2713 151 63363 Aquifex aeolicus 151 1 species 0 genus 0 34 6 1 168657 2987 Hydrogenobaculum no rank 0 5 2622382 2953 629 Hydrogenobaculum sp. SN 547146 0 species 1 1 species 0 380749 Hydrogenobaculum sp. Y04AAS1 437 1 0 species 547145 Hydrogenobaculum sp. SHO 629 547144 Hydrogenobaculum sp. HO 629 1 species 0 Hydrogenobaculum sp. 3684 629 547143 1 species 0 75905 206 0 genus 2 1 species 0 Thermocrinis albus 84 136094 122 Thermocrinis ruber 75906 species 0 1 277 939 genus 0 1 Hydrogenobacter thermophilus 277 940 1 species 0 0 no rank 1 90150 541 412592 541 genus 0 1 1 0 species 412593 Thermosulfidibacter takaii 541 3 3 0 order 1485951 1 Desulfurobacteriales 1337 2 family 0 1334 558314 1044 64159 genus 0 1 1 0 species Desulfurobacterium thermolithotrophum 1044 64160 1 0 genus 171868 290 0 species 1 290 Thermovibrio ammonificans 228745 phylum 0 2 20 7316 Acidobacteria 1 57723 1 204432 6814 Acidobacteriia class 0 17 58 0 order 4 40 1382 Solibacterales 1 332160 332161 1 Solibacteraceae 1342 3 8 family 0 5 2 genus 0 Candidatus Solibacter 1334 332162 1 0 species 1 1329 Candidatus Solibacter usitatus 332163 204433 1 Acidobacteriales 5374 12 50 order 0 204434 1 Acidobacteriaceae 5324 11 47 0 family genus 0 3 5 1616 Granulicella 1 940557 Granulicella mallensis 753 940614 1 species 0 0 species 1 858 Granulicella tundricola 940615 genus 0 5 2 780 Candidatus Koribacter 1 658061 1 0 species Candidatus Koribacter versatilis 775 658062 2 6 genus 0 Acidobacterium 1103 33973 1 Acidobacterium capsulatum 1097 33075 1 species 0 392733 1 Terriglobus 1778 3 5 0 genus Terriglobus saanensis 686 870903 1 species 0 392734 1087 Terriglobus roseus 0 species 1 1562566 500 2 0 class 500 Chloracidobacterium 1 458032 genus 0 2 20 1 species 0 458033 Chloracidobacterium thermophilum 480 phylum 0 9 3796 200930 68337 1 Deferribacteres 3796 19 9 class 0 3777 Deferribacterales 1 191393 0 order 9 8 41 7 family 0 Deferribacteraceae 3768 191394 1 genus 0 1 2 1117 Deferribacter 1 53572 species 0 1 1116 Deferribacter desulfuricans 197162 1 2351 739 Flexistipes genus 0 2 1 738 Flexistipes sinusarabici 2352 species 0 1 923 117999 genus 0 1 118000 923 Denitrovibrio acetiphilus species 0 1 1 genus 0 948 545865 0 species 1 948 Calditerrivibrio nitroreducens 477976 2138240 320 phylum 0 2 2138243 320 2 0 class 2 order 0 2138246 320 320 2138247 2 0 family 1 2 0 genus 68335 1 Coprothermobacter 320 1 species 0 35786 Coprothermobacter proteolyticus 319 89 clade 0 1783257 32753 204428 3173 23 phylum 0 3173 Chlamydiia 1 204429 0 class 23 8 1 51291 2108 Chlamydiales 0 order 3 14 1 809 2105 Chlamydiaceae family 0 1 13 no rank 0 12 2104 1113537 12 10 0 genus 810 1 Chlamydia 2104 83555 Chlamydia abortus 179 1 species 0 1 species 0 Chlamydia trachomatis 226 813 species 0 1 170 Chlamydia pneumoniae 83558 83556 Chlamydia felis 230 1 0 species species 0 1 85991 180 Chlamydia pecorum 0 species 1 175 Chlamydia avium 1457141 239 Chlamydia suis 83559 0 species 1 0 species 1 1457153 183 Chlamydia gallinacea 83554 Chlamydia psittaci 130 1 0 species 83557 Chlamydia caviae 243 1 species 0 1 species 0 Chlamydia muridarum 139 83560 1 8 0 order 1963360 1 Parachlamydiales 1057 155 92712 0 family 2 2 5 genus 0 Simkania 155 34093 1 83561 150 Simkania negevensis species 0 1 family 0 1 2 1 92714 312 Waddliaceae 311 71666 1 0 genus species 0 1 311 Waddlia chondrophila 71667 family 0 1 3 589 Parachlamydiaceae 1 92713 194 282132 genus 0 1 0 species 1 194 Candidatus Protochlamydia naegleriophila 389348 0 genus 1 394 83551 Parachlamydia acanthamoebae 394 83552 1 0 species 10 27 phylum 0 Verrucomicrobia 10852 74201 1 134549 85 class 0 2 0 genus 2 1 1 134550 85 Candidatus Xiphinematobacter 84 2648876 0 no rank 1 0 species 1 1704307 84 Candidatus Xiphinematobacter sp. Idaho Grape 2 no rank 0 417295 1947 1637999 1056 Verrucomicrobia bacterium IMCC26134 species 0 1 2026799 891 Verrucomicrobia bacterium 0 species 1 12 48 0 class 414999 1 Opitutae 4656 4064 Opitutales 1 415000 0 order 97 7 family 0 60 6 1 134623 3967 Opitutaceae genus 0 23 2 1272 Opitutus 1 178440 1 0 species 107709 Opitutus terrae 1249 1592 278955 0 no rank 1 Opitutaceae bacterium TAV5 1592 794903 1 species 0 genus 0 28 2 1 1961799 1043 Lacunisphaera 1015 Lacunisphaera limnophila 1838286 species 0 1 2 4 order 0 415001 1 Puniceicoccales 544 family 0 3 4 542 Puniceicoccaceae 1 415002 538 Coraliomargarita 1 442430 genus 0 2 5 species 0 1 395922 533 Coraliomargarita akajimensis 0 class 1 4 1 1955630 620 Methylacidiphilae 717963 619 3 0 order 619 Methylacidiphilaceae 1 717964 family 0 3 1 511745 618 0 genus 2 591154 Methylacidiphilum fumariolicum 450 1 species 0 168 Methylacidiphilum infernorum 511746 0 species 1 3534 Verrucomicrobiae 1 203494 0 class 5 6 Verrucomicrobiales 3529 48461 1 10 5 0 order 0 family 33 4 1 1647988 3519 Akkermansiaceae 1 239934 3486 Akkermansia genus 0 9 3 Akkermansia muciniphila 2310 239935 1 species 0 Akkermansia glycaniphila 1167 1679444 1 species 0 4 0 phylum 134625 684 19 4 class 0 Kiritimatiellae 684 1921781 1 1921782 1 Kiritimatiellales 665 14 3 order 0 651 1921783 0 family 2 1 1921784 651 Kiritimatiella genus 0 2 30 Kiritimatiella glycovorans 621 1307763 1 0 species 0 phylum 32 11542 203682 0 class 7 10 2345 Phycisphaerae 1 666505 2483366 1295 order 0 2 family 0 2 1295 2483367 2 0 genus 2483368 1295 1940790 617 Phycisphaerae bacterium L21-RPul-D3 species 0 1 1941349 Phycisphaerae bacterium ST-PulAB-D4 678 1 0 species 4 11 0 order 666506 1 Phycisphaerales 1040 16 3 0 family 666507 1 Phycisphaeraceae 1029 666508 1 Phycisphaera 1013 17 2 0 genus 1 species 0 Phycisphaera mikurensis 996 547188 0 class 48 23 1 203683 8537 Planctomycetia order 0 5 2691354 957 2691357 585 0 family 3 353 265488 genus 0 1 265606 353 Rhodopirellula baltica 0 species 1 2 2 genus 0 Pirellula 232 123 1 1 species 0 125 Pirellula staleyi 230 2 family 0 2691358 372 1 1676125 372 Thermogutta 0 genus 2 8 1331910 364 Thermogutta terrifontis species 0 1 606 2691355 order 0 3 1 1914233 606 Gemmataceae 0 family 3 1 605 Gemmata 1 113 genus 0 1 2 604 2622970 no rank 0 1 1630693 Gemmata sp. SH-PL17 604 1 0 species 0 order 127 9 1 112 4308 Planctomycetales 0 family 10 8 1 126 4181 Planctomycetaceae 1 genus 0 1649490 415 1 species 0 119 Rubinisphaera brasiliensis 415 703 Planctopirus 1 1649480 genus 0 6 2 120 697 Planctopirus limnophila 0 species 1 1936111 672 genus 0 1 Fuerstia marisgermanicae 672 1891926 1 0 species Planctomyces 2381 118 1 21 3 0 genus 2648843 2360 2 0 no rank 0 species 1 1456 Planctomyces sp. SH-PL62 1636152 1632864 Planctomyces sp. SH-PL14 904 1 0 species 2691356 2618 0 order 5 2618 Isosphaeraceae 1 1763524 0 family 35 5 551 466152 0 genus 1 1 0 species 466153 Singulisphaera acidiphila 551 5 2 genus 0 Paludisphaera 1143 1763521 1 1138 Paludisphaera borealis 1387353 species 0 1 889 127 1 0 genus 0 species 1 889 Isosphaera pallida 128 2517206 660 0 class 2 order 0 22 2 1 1127829 660 Candidatus Brocadiales 1 family 0 1127830 638 638 380738 0 genus 1 174633 638 Candidatus Kuenenia stuttgartiensis species 0 1 256845 6502 3 0 phylum 1 1313211 6502 Lentisphaeria 0 class 3 145 6357 Victivallales 1 278082 order 0 2 2196 no rank 0 1 4161 1674876 Victivallales bacterium CCUG 44730 4161 2094242 1 0 species 25784653 1783272 clade 0 1712 544448 1 Tenericutes 91128 102 21 phylum 0 0 no rank 2 2799557 2913 1 1912503 2913 Candidatus Izimaplasma 0 genus 2 2 2624196 2911 1 no rank 0 2911 Candidatus Izimaplasma sp. HR1 1541959 species 0 1 31969 1 Mollicutes 81895 58 97 class 0 order 0 76 44 1 2085 27711 Mycoplasmatales 2092 1 Mycoplasmataceae 27635 82 43 0 family genus 0 12 2767358 7513 2109 377 Mycoplasma synoviae species 0 1 2113 462 Mycoplasma californicum 0 species 1 0 species 1 29555 711 Mycoplasma canis 1 0 species Mycoplasma fermentans 936 2115 1 0 species 2107 Mycoplasma pulmonis 446 1 species 0 Mycoplasma arginini 644 2094 1 0 species 2112 Mycoplasma bovigenitalium 703 1 species 0 Mycoplasma pullorum 363 48003 29553 302 Mycoplasma bovirhinis species 0 1 171284 815 Mycoplasma cynos species 0 1 1 0 species Mycoplasma bovis 966 28903 1 species 0 Mycoplasma agalactiae 788 2110 1 2093 18627 Mycoplasma genus 0 157 27 species 0 1 2104 45 Mycoplasma pneumoniae 1 species 0 Mycoplasma gallisepticum 517 2096 1 species 0 2111 Mycoplasma arthritidis 354 Mycoplasma hominis 1061 2098 1 species 0 6468 656088 3 0 species group 1 species 0 2105 Mycoplasma leachii 1244 1793 Mycoplasma capricolum 2095 species 0 1 2102 Mycoplasma mycoides 3431 1 0 species 624 Mycoplasma hyopneumoniae 2099 0 species 1 626 Mycoplasma canadense 29554 species 0 1 species 0 1 123 Mycoplasma haemocanis 136241 0 species 1 183 Mycoplasma ovis 171632 Mycoplasma penetrans 1055 28227 1 species 0 2128 330 Mycoplasma flocculare species 0 1 species 0 1 129 Mycoplasma genitalium 2097 1 species 0 984991 Mycoplasma parvum 113 1 0 species 2100 Mycoplasma hyorhinis 530 Mycoplasma suis 170 57372 1 species 0 412 Mycoplasma bovoculi 45362 0 species 1 species 0 1 1828 Mycoplasma yeatsii 51365 Mycoplasma haemofelis 113 29501 1 species 0 572 Mycoplasma mobile 2118 0 species 1 species 0 1 108 Mycoplasma wenyonii 65123 2123 598 Mycoplasma putrefaciens species 0 1 1 0 no rank 2683645 1718 1 0 species Mycoplasma sp. (ex Biomphalaria glabrata) 1718 1749074 0 species 1 524 Mycoplasma crocodyli 50052 1 species 0 Mycoplasma dispar 269 86660 1 2129 1413 Ureaplasma genus 0 3 3 1 species 0 134821 Ureaplasma parvum 723 2130 Ureaplasma urealyticum 687 1 species 0 186328 1 Entomoplasmatales 40068 42 39 order 0 0 family 49 24 24563 Spiroplasmataceae 1 2131 23 1102 genus 0 2132 1 Spiroplasma 24514 Spiroplasma monobiae 1202 2136 1 species 0 216937 1561 Spiroplasma floricola species 0 1 species 0 1 1398 Spiroplasma diminutum 216936 0 species 1 216942 835 Spiroplasma litorale 2144 Spiroplasma mirum 1052 1 0 species 0 species 1 216945 883 Spiroplasma syrphidicola 1 0 species Spiroplasma cantharicola 1251 362837 Spiroplasma apis 639 2137 1 0 species 1 species 0 2133 Spiroplasma citri 1021 1114980 Spiroplasma atrichopogonis 1122 1 0 species 216935 1315 Spiroplasma culicicola species 0 1 2145 Spiroplasma taiwanense 974 1 species 0 216934 825 Spiroplasma corruscae species 0 1 0 species 1 2139 888 Spiroplasma clarkii 1 species 0 315358 Spiroplasma eriocheiris 2102 216944 1253 Spiroplasma sabaudiense species 0 1 Spiroplasma helicoides 865 216938 1 0 species 216933 852 Spiroplasma chrysopicola 0 species 1 2637901 1684 0 no rank 2 1 0 species 1914410 Spiroplasma sp. NBRC 100390 842 1 0 species Spiroplasma sp. TU-14 842 1898044 1 species 0 216946 Spiroplasma turonicum 881 species 0 1 47834 809 Spiroplasma kunkelii 30 14 0 family 33925 1 Entomoplasmataceae 15463 141 8 genus 0 Mesoplasma 11942 46239 1 1 species 0 Mesoplasma chauliocola 969 216427 species 0 1 138853 3493 Mesoplasma lactucae 324078 942 Mesoplasma coleopterae 0 species 1 1 species 0 Mesoplasma entomophilum 1038 2149 Mesoplasma tabanidae 790 219745 1 0 species 225999 2763 Mesoplasma syrphidae 0 species 1 2151 Mesoplasma florum 1806 1 0 species 15 5 0 genus 46238 1 Entomoplasma 3491 81459 1089 Entomoplasma melaleucae 0 species 1 1 0 species Entomoplasma somnilux 815 215578 1 0 species Entomoplasma freundtii 587 74700 Entomoplasma luminosum 985 214888 1 species 0 order 0 26 13 1 186329 14058 Acholeplasmatales 12 33 0 family 2146 1 Acholeplasmataceae 14032 genus 0 222 5 1 2147 10746 Acholeplasma 0 species 1 2834 Acholeplasma palmae 38986 1 0 species 2148 Acholeplasma laidlawii 1987 1 0 species 61635 Acholeplasma brassicae 2062 Acholeplasma oculi 3641 35623 1 species 0 genus 0 210 6 3253 Candidatus Phytoplasma 1 33926 85632 665 0 species group 1 665 Candidatus Phytoplasma australiense 59748 0 species 1 3 0 species group 85620 1753 469 Aster yellows witches'-broom phytoplasma 229545 0 species 1 species 0 1 202462 594 Maize bushy stunt phytoplasma 0 species 1 100379 690 Onion yellows phytoplasma 1 0 species group 625 85630 37692 Candidatus Phytoplasma mali 625 1 species 0 713063 6299 0 no rank 2 1911683 Tenericutes bacterium MZ-XQ 3392 1 0 species Tenericutes bacterium MO-XQ 2907 1911684 1 0 species 0 phylum 726 512 21308247 Firmicutes 1 1239 17524663 Clostridia 1 186801 class 0 411 223 0 order 3 2770089 2547 0 family 1 1891 2770092 1 genus 0 1891 499228 1891 Tepidanaerobacter acetatoxydans 499229 0 species 1 656 2770093 2 family 0 3 2 0 genus Thermosediminibacter 656 291988 1 1 species 0 Thermosediminibacter oceani 653 291990 order 0 11 4 1 53433 9539 Halanaerobiales 4085 Halobacteroidaceae 1 53434 0 family 4 40 1 genus 0 1590 28186 1 0 species Acetohalobium arabaticum 1590 28187 genus 0 2 3 1 42417 2455 Halobacteroides 1 0 species Halobacteroides halobius 2452 42422 972 1 Halanaerobiaceae 5450 6 10 0 family 32636 1 Halothermothrix 1253 2 1 genus 0 1 0 species Halothermothrix orenii 1252 31909 genus 0 69 3 1 2330 4187 Halanaerobium 1 0 species 2331 Halanaerobium praevalens 2498 0 species 1 1620 Halanaerobium hydrogeniformans 656519 order 0 56 38 1 68295 49470 Thermoanaerobacterales 473 227387 family 0 2 0 genus 2 2 1 227388 473 Thermodesulfobium 184064 Thermodesulfobium narugense 471 1 species 0 family 0 2 9 2729 Thermoanaerobacterales Family IV. Incertae Sedis 1 543372 2720 252965 0 genus 1 1 species 0 Mahella australiensis 2720 252966 21512 Thermoanaerobacterales Family III. Incertae Sedis 1 543371 family 0 35 13 Caldicellulosiruptor 14957 44000 1 9 193 0 genus 2212 Caldicellulosiruptor saccharolyticus 44001 0 species 1 0 species 1 1702 Caldicellulosiruptor hydrothermalis 413888 Caldicellulosiruptor bescii 1834 31899 1 0 species 413889 1692 Caldicellulosiruptor kronotskyensis 0 species 1 1 0 species 55205 Caldicellulosiruptor owensensis 1688 717609 Caldicellulosiruptor obsidiansis 1952 1 species 0 52766 1968 Caldicellulosiruptor lactoaceticus species 0 1 1716 Caldicellulosiruptor kristjanssonii 52765 species 0 1 Thermoanaerobacterium 6520 28895 1 12 3 0 genus 1 species 0 1517 Thermoanaerobacterium thermosaccharolyticum 4349 Thermoanaerobacterium xylanolyticum 2159 29329 1 0 species 1 186814 24700 Thermoanaerobacteraceae 0 family 59 20 Caldanaerobacter 1610 249529 1 2 3 0 genus 911092 Caldanaerobacter subterraneus 1607 1 species 0 2 1 0 genus Carboxydothermus 1087 129957 1 129958 1086 Carboxydothermus hydrogenoformans species 0 1 1 140458 914 Thermacetogenium 0 genus 28 2 0 species 1 886 Thermacetogenium phaeum 85874 1 1754 19068 Thermoanaerobacter 0 genus 608 9 46354 Thermoanaerobacter wiegelii 2222 1 species 0 1820 Thermoanaerobacter kivui 2325 0 species 1 2 no rank 0 5154 2636821 Thermoanaerobacter sp. X514 2564 399726 1 0 species 2590 Thermoanaerobacter sp. X513 573062 0 species 1 583357 1692 Thermoanaerobacter mathranii species 0 1 0 species 1 2653 Thermoanaerobacter brockii 29323 2653 Thermoanaerobacter pseudethanolicus 496866 0 species 1 1 0 species Thermoanaerobacter italicus 2266 108150 4 no rank 0 42857 1962 genus 0 2 2 1 42837 848 Ammonifex Ammonifex degensii 846 42838 1 species 0 1114 Moorella 1 44260 0 genus 1 2 Moorella thermoacetica 1113 1525 1 species 0 1704 Natranaerobiales 1 485256 0 order 3 4 Natranaerobiaceae 1701 485255 1 3 3 0 family 375928 1 Natranaerobius 1698 2 35 0 genus 375929 Natranaerobius thermophilus 1663 1 0 species 33074 166 0 order 186802 1 Clostridiales 17460992 353961 Peptostreptococcaceae 1 186804 family 0 12 771 1 no rank 0 1411023 2070 Peptostreptococcaceae bacterium oral taxon 929 2070 2081703 1 0 species 5 2 0 genus 44259 1 Filifactor 3040 0 species 1 143361 3035 Filifactor alocis 1870884 1 Clostridioides 250345 2 238 genus 0 1496 250107 Clostridioides difficile 0 species 1 Paeniclostridium 89361 1849828 1 2 2 0 genus 1505 Paeniclostridium sordellii 89359 1 species 0 0 genus 10 2 4633 Acetoanaerobium 1 186831 1511 Acetoanaerobium sticklandii 4623 1 0 species 2 8 0 genus 1481960 1 Peptoclostridium 3741 species 0 1 3733 Peptoclostridium acidaminophilum 1731 186803 1 Lachnospiraceae 8835268 2871 27 0 family 349997 2569097 genus 0 1 1 0 species [Eubacterium] hallii 349997 39488 genus 0 1 2719231 121308 [Clostridium] saccharolyticum 121308 84030 1 0 species 1037 4 genus 0 Lachnoclostridium 263659 1506553 1 1 0 species 66219 Lachnoclostridium phytofermentans 28544 103748 2608895 0 no rank 1 1 species 0 1834196 Lachnoclostridium sp. YL32 103748 Lachnoclostridium phocaeense 130330 1871021 1 species 0 2 no rank 0 1707954 186928 1 0 species 712991 Lachnospiraceae bacterium oral taxon 500 38550 1 species 0 [Eubacterium] rectale 1669404 39491 572511 1 Blautia 264546 3 284 genus 0 0 no rank 1 2648079 98919 0 species 1 98919 Blautia sp. YL58 1796616 1322 165343 Blautia hansenii 0 species 1 2719313 214016 1 0 genus species 0 1 208479 214016 [Clostridium] bolteae 0 genus 67 2 614534 Roseburia 1 841 301301 614467 Roseburia hominis species 0 1 2 7 genus 0 Herbinix 17637 1663717 1 1679721 17630 Herbinix luporum species 0 1 Anaerotignum 6462 2039240 1 2 11 genus 0 6451 Anaerotignum propionicum 28446 0 species 1 0 genus 80 2 1797656 Anaerostipes 1 207244 species 0 1 649756 1797576 Anaerostipes hadrus 1 830 62570 Butyrivibrio genus 0 3 99 1 0 species 185008 Butyrivibrio hungatei 32548 43305 29923 Butyrivibrio proteoclasticus species 0 1 12685 Cellulosilyticum 1 698776 genus 0 2 2 Cellulosilyticum lentocellum 12683 29360 1 species 0 28050 3399373 1 0 genus 1 species 0 [Eubacterium] eligens 3399373 39485 31979 1 Clostridiaceae 602592 863 41 family 0 1 114627 5852 Alkaliphilus genus 0 2 3 461876 Alkaliphilus oremlandii 2562 1 species 0 species 0 1 208226 3288 Alkaliphilus metalliredigens 1981033 348 Mordavella 0 genus 1 7669 Candidatus Arthromitus 1 49082 0 genus 35 4 3 no rank 0 2638829 7634 1508644 2612 Candidatus Arthromitus sp. SFB-mouse-NL 0 species 1 2395 Candidatus Arthromitus sp. SFB-rat-Yit 1041504 0 species 1 1 0 species Candidatus Arthromitus sp. SFB-mouse 2627 49118 582050 Clostridium 1 1485 genus 0 30 2266 0 species 1 32690 Clostridium chauvoei 46867 1 species 0 1513 Clostridium tetani 12642 1 species 0 Clostridium cochlearium 6646 1494 Clostridium scatologenes 10515 1548 1 species 0 Clostridium botulinum 60565 1491 1 species 0 1 species 0 1561 Clostridium baratii 32921 1520 Clostridium beijerinckii 23081 1 0 species 0 species 1 394958 18699 Clostridium taeniosporum no rank 0 2 2614128 48021 species 0 1 755731 6064 Clostridium sp. BNL1100 Clostridium sp. SY8519 41957 1042156 1 0 species 1 species 0 238834 Clostridium estertheticum 6407 1 species 0 169679 Clostridium saccharobutylicum 18730 Clostridium aceticum 3954 84022 1 0 species 1 species 0 Clostridium perfringens 136675 1502 1519 5649 Clostridium tyrobutyricum 0 species 1 Clostridium butyricum 32807 1492 1 0 species 0 species 1 1534 8404 Clostridium kluyveri Clostridium pasteurianum 13600 1501 1 0 species 8175 Clostridium novyi 1542 species 0 1 0 species 1 6665 Clostridium ljungdahlii 1538 217159 11387 Clostridium carboxidivorans 0 species 1 species 0 1 1493 11100 Clostridium cellulovorans species 0 1 6695 Clostridium autoethanogenum 84023 0 species 1 21501 Clostridium saccharoperbutylacetonicum 36745 1216932 14965 Clostridium bornimense species 0 1 Clostridium argentinense 9388 29341 1 0 species 7256 Clostridium acetobutylicum 1488 species 0 1 1497 4059 Clostridium formicaceticum species 0 1 0 species 1 6587 Clostridium sporogenes 1509 genus 0 53 2 1 390805 5810 Geosporobacter 1424294 5757 Geosporobacter ferrireducens 0 species 1 12 family 0 59877 2304686 2304693 4204 1 genus 0 0 species 1 84032 4204 [Clostridium] thermosuccinogenes 26094 2305130 1 0 no rank 26094 Ruminiclostridium sp. KB18 1834198 0 species 1 2 40 0 genus Fastidiosipila 2188 236752 1 236753 Fastidiosipila sanguinis 2148 1 0 species 1 0 genus 3916 2304691 1510 [Clostridium] stercorarium 3916 1 species 0 Mageeibacillus 4484 1637257 1 3 2 0 genus 884684 4481 Mageeibacillus indolicus species 0 1 genus 0 2 351 7065 Ruminiclostridium 1 1508657 0 species 1 1521 6714 [Clostridium] cellulolyticum 2304692 11926 0 genus 3 1515 3752 Ruminiclostridium thermocellum species 0 1 [Clostridium] clariflavum 5053 288965 1 0 species 1677857 Herbivorax saccincola 3121 1 0 species 3 6 family 0 Oscillospiraceae 17583 216572 1 Oscillibacter 17577 459786 1 2 31 genus 0 Oscillibacter valericigenes 17546 351091 1 0 species no rank 0 10 224646 538999 genus 0 2 668 56565 Intestinimonas 1 1392389 Intestinimonas butyriciproducens 55897 1297617 1 species 0 family 0 4 28 9076 Clostridiales Family XIII. Incertae Sedis 1 543314 1 86331 4124 Mogibacterium 0 genus 2 36 Mogibacterium diversum 4088 114527 1 species 0 4924 [Eubacterium] sulci 143393 species 0 1 Clostridiales Family XVII. Incertae Sedis 2311 539000 1 3 23 0 family 2288 Thermaerobacter 1 73918 0 genus 44 2 2244 Thermaerobacter marianensis 73919 0 species 1 0 genus 1 156694 2717089 species 0 1 2086584 156694 Mordavella sp. Marseille-P3756 3386 Heliobacteriaceae 1 31984 0 family 3 39 2697 1 Heliobacterium 3347 2 42 genus 0 1 species 0 35701 Heliobacterium modesticaldum 3305 family 0 4 2 1 68298 1328 Syntrophomonadaceae Syntrophothermus 542 129001 1 1 2 genus 0 1 species 0 86170 Syntrophothermus lipocalidus 541 genus 0 1 784 862 863 784 Syntrophomonas wolfei 0 species 1 1 541000 7204211 Ruminococcaceae family 0 902 13 50183 Flavonifractor 1 946234 0 genus 2 68 1 species 0 292800 Flavonifractor plautii 50115 552397 3490 1 no rank 0 [Clostridium] cellulosi 3490 29343 1 species 0 Ethanoligenens 11089 253238 1 2 28 genus 0 11061 Ethanoligenens harbinense 253239 species 0 1 2305133 9073 no rank 0 1 1 species 0 Ruminococcaceae bacterium CPB6 9073 1572656 Ruminococcus 42313 1263 1 120 3 0 genus 31164 Ruminococcus bicirculans 1160721 species 0 1 11029 Ruminococcus albus 1264 0 species 1 1890281 2 Herbivorax 0 genus 1 1 216851 7087159 Faecalibacterium genus 0 1554 2 853 7085605 Faecalibacterium prausnitzii 0 species 1 3 146 family 0 990719 1 Christensenellaceae 51691 0 genus 600 2 51545 Christensenella 1 990721 1805714 50945 Christensenella massiliensis 0 species 1 1 543349 3254 Symbiobacteriaceae 0 family 3 20 44 2 0 genus Symbiobacterium 3234 2733 1 2734 Symbiobacterium thermophilum 3190 1 0 species 29 104 family 0 Peptococcaceae 37349 186807 1 55 5 0 genus 36853 1 Desulfitobacterium 8894 0 species 1 1768 Desulfitobacterium dehalogenans 36854 1 species 0 Desulfitobacterium dichloroeliminans 2102 233055 142877 Desulfitobacterium metallireducens 1663 1 0 species 49338 Desulfitobacterium hafniense 3306 1 0 species 56112 1 Dehalobacter 5352 4 70 0 genus 0 no rank 2 3210 2635733 1530 Dehalobacter sp. DCA 1147129 0 species 1 1 species 0 Dehalobacter sp. CF 1680 1131462 1 0 species 55583 Dehalobacter restrictus 2072 Candidatus Desulforudis 1167 471826 1 2 12 0 genus 471827 Candidatus Desulforudis audaxviator 1155 1 species 0 109 5 0 genus 1562 1 Desulfotomaculum 6873 0 species 1 1565 1475 Desulfotomaculum nigrificans 59610 1569 Desulfotomaculum reducens 0 species 1 1833852 1486 Desulfotomaculum ferrireducens 0 species 1 0 species 1 1564 2234 Desulfotomaculum ruminis 51196 1 Syntrophobotulus 1750 1 2 genus 0 Syntrophobotulus glycolicus 1749 51197 1 species 0 0 genus 2 3 1126 Thermincola 1 278993 1123 Thermincola potens 863643 0 species 1 2282740 2147 0 genus 1 species 0 1 102134 2147 Desulfotomaculum gibsoniae 51514 1 Dehalobacterium 3462 2 2 genus 0 species 0 1 3460 Dehalobacterium formicoaceticum 51515 4 79 0 genus 79206 1 Desulfosporosinus 4947 1563 Desulfosporosinus orientis 1659 1 0 species species 0 1 885581 1638 Desulfosporosinus acidiphilus species 0 1 1571 Desulfosporosinus meridiei 79209 0 genus 1 1527 2282742 1527 Desulfotomaculum acetoxidans 58138 species 0 1 5 28 family 0 Eubacteriaceae 32772 186806 1 genus 0 2 13 3176 Acetobacterium 1 33951 1 0 species Acetobacterium woodii 3163 33952 1730 1 Eubacterium 29568 1967 2 0 genus 1 0 species 1736 Eubacterium limosum 27601 84086 2460 1 0 no rank 1 0 species endosymbiont 'TC1' of Trimyema compressum 2460 243899 1 909932 1253615 Negativicutes 0 class 61 31 5 79 0 order Acidaminococcales 36466 1843488 1 909930 1 Acidaminococcaceae 36387 81 4 family 0 Acidaminococcus 36306 904 1 79 3 genus 0 5936 Acidaminococcus fermentans 905 0 species 1 Acidaminococcus intestini 30291 187327 1 species 0 909929 1 Selenomonadales 45672 14 49 0 order 6328 Sporomusaceae 1 1843490 0 family 4 8 1 365348 6320 Pelosinus genus 0 31 3 365349 2933 Pelosinus fermentans species 0 1 2629460 3356 1 0 no rank Pelosinus sp. UFO1 3356 484770 1 species 0 1843491 1 Selenomonadaceae 39295 9 299 family 0 genus 0 2 8 1 158846 18672 Megamonas 158847 Megamonas hypermegale 18664 1 0 species 215 6 0 genus 970 1 Selenomonas 20324 971 6549 Selenomonas ruminantium 0 species 1 9725 2637378 no rank 0 3 0 species 1 2860 Selenomonas sp. oral taxon 478 712538 Selenomonas sp. oral taxon 136 4047 713030 1 0 species species 0 1 2818 Selenomonas sp. oral taxon 920 1884263 0 species 1 69823 3835 Selenomonas sputigena 2747 11 0 order Veillonellales 1171416 1843489 1 0 family 10 3074 1168669 Veillonellaceae 1 31977 Dialister 4443 39948 1 28 2 genus 0 39950 Dialister pneumosintes 4415 1 species 0 0 genus 15 3 1 29465 1146875 Veillonella 0 species 1 29466 1074232 Veillonella parvula 248315 Veillonella rodentium 72628 1 0 species genus 0 2 664 1 906 11347 Megasphaera Megasphaera elsdenii 10683 907 1 species 0 Negativicoccus 2930 909928 1 2 19 genus 0 0 species 1 2911 Negativicoccus massiliensis 1702287 17 5 0 class Limnochordia 1454 1676648 1 order 0 4 62 1437 Limnochordales 1 1676649 10 3 family 0 Limnochordaceae 1375 1676650 1 1676651 1 Limnochorda 1365 30 2 genus 0 1555112 Limnochorda pilosa 1335 1 species 0 0 class 11 10 79475 Erysipelotrichia 1 526524 0 order 10 98 1 526525 79465 Erysipelotrichales 322 9 0 family Erysipelotrichaceae 79367 128827 1 0 genus 441 3 11042 Erysipelothrix 1 1647 Erysipelothrix larvae 4907 1514105 1 species 0 1648 Erysipelothrix rhusiopathiae 5694 1 0 species 0 genus 2 22 8692 Faecalibaculum 1 1729679 0 species 1 8670 Faecalibaculum rodentium 1702221 0 no rank 1 32475 544447 0 species 1 1834207 32475 Erysipelotrichaceae bacterium I46 191303 1 Turicibacter 26836 25 2 genus 0 2638206 26811 no rank 0 1 species 0 1 1712675 26811 Turicibacter sp. H121 0 class 19 81 1 1737404 41935 Tissierellia 1737405 1 Tissierellales 40348 1298 16 order 0 Gottschalkiaceae 4801 2042895 1 7 3 family 0 1505664 1 Gottschalkia 4794 2 10 genus 0 Gottschalkia acidurici 4784 1556 1 0 species 10993 12 family 0 Peptoniphilaceae 34249 1570339 1 Finegoldia 4361 150022 1 2 12 genus 0 4349 Finegoldia magna 1260 0 species 1 3 2 genus 0 Murdochiella 8830 1161127 1 8827 Murdochiella vaginalis 1852373 species 0 1 2 1 genus 0 Peptoniphilus 3554 162289 1 1 0 no rank 2637196 3553 1 species 0 1912856 Peptoniphilus sp. ING2-D1G 3553 3 7 genus 0 Anaerococcus 3421 165779 1 species 0 1 33034 1944 Anaerococcus prevotii 1 0 species 1870984 Anaerococcus mediterraneensis 1470 3090 Parvimonas 1 543311 0 genus 2 22 1 species 0 33033 Parvimonas micra 3068 1737407 1506 no rank 0 2 1 1582879 1506 Ezakiella 0 genus 24 2 1852374 Ezakiella massiliensis 1482 1 species 0 433 417 class 0 91061 1 Bacilli 2402614 1 186826 1915967 Lactobacillales order 0 10043 166 1 no rank 0 1963 263855 1963 Lactobacillales bacterium 1993866 0 species 1 1 81850 13896 Leuconostocaceae 0 family 18 36 genus 0 1 2 945 Oenococcus 1 46254 Oenococcus oeni 944 1247 1 0 species 0 genus 6 38 1 46255 5027 Weissella Weissella cibaria 1285 137591 1 0 species 1 species 0 Weissella jogaejeotgali 740 1631871 165096 815 Weissella koreensis 0 species 1 species 0 1 1249 1166 Weissella paramesenteroides 759620 983 Weissella ceti 0 species 1 9 51 0 genus Leuconostoc 7888 1243 1 255248 467 Leuconostoc garlicum species 0 1 species 0 1 1089 Leuconostoc kimchii 136609 1 0 species 1245 Leuconostoc mesenteroides 1835 species 0 1 1006 Leuconostoc carnosum 1252 0 species 1 381 Leuconostoc lactis 1246 2685106 1014 1 no rank 0 species 0 1 979982 1014 Leuconostoc sp. C2 0 species 1 1185 Leuconostoc gelidum 1244 33964 Leuconostoc citreum 860 1 species 0 1 186828 15626 Carnobacteriaceae 0 family 37 11 8 2 genus 0 191769 1 Marinilactibacillus 3121 no rank 0 1 2632303 3113 Marinilactibacillus sp. 15R 3113 1911586 1 0 species Jeotgalibaca 3890 1470540 1 3 17 genus 0 708126 Jeotgalibaca dankookensis 1397 1 species 0 2621505 2476 1 0 no rank 2476 Jeotgalibaca sp. PTS2502 1903686 0 species 1 genus 0 46 5 1 2747 8578 Carnobacterium 1 species 0 2751 Carnobacterium maltaromaticum 2758 257487 3719 no rank 0 2 Carnobacterium sp. 17-4 2238 208596 1 species 0 1481 Carnobacterium sp. CP1 1564681 0 species 1 1 species 0 Carnobacterium inhibens 2055 147709 1 81852 95077 Enterococcaceae family 0 154 20 2737 1 Vagococcus 4995 4 3 genus 0 Vagococcus penaei 2212 633807 1 0 species Vagococcus teuberi 2779 519472 1 0 species Enterococcus 84965 1350 1 3140 12 genus 0 2484 Enterococcus thailandicus 417368 0 species 1 0 species 1 3153 Enterococcus durans 53345 species 0 1 1354 2515 Enterococcus hirae 1352 Enterococcus faecium 46236 1 0 species 53346 2832 Enterococcus mundtii species 0 1 0 species 1 1177 Enterococcus casseliflavus 37734 species 0 1 2005703 2079 Enterococcus wangshanyuanii 1351 Enterococcus faecalis 17372 1 species 0 3 no rank 0 2608891 3977 2057791 Enterococcus sp. CR-Ec1 1275 1 0 species 2060306 Enterococcus sp. FDAARGOS_163 1241 1 0 species 1 0 species 2060307 Enterococcus sp. FDAARGOS_375 1461 1 33969 2007 Melissococcus 0 genus 2 2 species 0 1 2005 Melissococcus plutonius 33970 genus 0 2 6 1 51668 2956 Tetragenococcus 1 species 0 Tetragenococcus halophilus 2950 51669 0 family 14 8 1 186827 10098 Aerococcaceae 10084 Aerococcus 1 1375 genus 0 894 7 species 0 1 1304 Aerococcus viridans 1377 Aerococcus sanguinicola 1844 119206 1 0 species 1 0 species Aerococcus christensenii 1769 87541 1135 Aerococcus urinaehominis 128944 0 species 1 1939 Aerococcus urinaeequi 51665 species 0 1 1376 Aerococcus urinae 1199 1 species 0 1300 1 Streptococcaceae 1673775 7663 49 family 0 1357 1 Lactococcus 13560 5 44 0 genus Lactococcus lactis 9335 1358 1 species 0 0 species 1 990 Lactococcus raffinolactis 1366 Lactococcus piscium 1246 1364 1 species 0 1945 Lactococcus garvieae 1363 0 species 1 1652552 Streptococcus 1 1301 0 genus 8147 43 Streptococcus uberis 1916 1349 1 0 species 1 species 0 257758 Streptococcus pseudopneumoniae 2403 species 0 1 2427 Streptococcus mutans 1309 species 0 1 2334 Streptococcus cristatus 45634 1 species 0 Streptococcus mitis 7498 28037 Streptococcus oralis 7991 1303 1 species 0 4750 119603 2 species group 0 0 species 1 1336 2701 Streptococcus equi 1334 2049 Streptococcus dysgalactiae 0 species 1 1 0 species 1811193 Streptococcus pantholopis 1658 3 0 species group 671232 71939 1 species 0 1338 Streptococcus intermedius 3771 1 0 species Streptococcus constellatus 29732 76860 Streptococcus anginosus 38436 1328 1 0 species 1 species 0 82348 Streptococcus pluranimalium 1633 1314 Streptococcus pyogenes 5705 1 0 species 7 no rank 0 2608887 230272 0 species 1 1156431 2986 Streptococcus sp. I-G2 1 species 0 Streptococcus sp. A12 4318 1759399 1 0 species 1839799 Streptococcus sp. FDAARGOS_192 213435 0 species 1 3400 Streptococcus sp. I-P16 1156433 1 0 species Streptococcus sp. oral taxon 431 2332 712633 1 0 species 1902136 Streptococcus sp. NPS 308 1424 1319 2377 Streptococcus sp. 'group B' 0 species 1 Streptococcus iniae 1841 1346 1 0 species 1752 Streptococcus macedonicus 59310 0 species 1 1 0 species Streptococcus parasanguinis 44385 1318 0 species 1 6257 Streptococcus pneumoniae 1313 0 species 1 1072 Streptococcus himalayensis 1888195 1 0 species 1326 Streptococcus acidominimus 4431 0 species 1 197614 11701 Streptococcus pasteurianus 1 0 species Streptococcus parauberis 2708 1348 1 0 species Streptococcus gordonii 5481 1302 315405 5481 Streptococcus gallolyticus 0 species 1 0 species 1 1305 2848 Streptococcus sanguinis Streptococcus lutetiensis 12354 150055 1 0 species 1 0 species Streptococcus equinus 93369 1335 1002928 Streptococcus salivarius 1304 species 0 1 species 0 1 12756 Streptococcus infantarius 102684 1308 Streptococcus thermophilus 31171 1 0 species 1311 23188 Streptococcus agalactiae species 0 1 1825069 Streptococcus marmotae 1324 1 species 0 Streptococcus suis 36073 1307 1 0 species 1360 Streptococcus halotolerans 1814128 species 0 1 0 species 1 400065 1399 Streptococcus merionis 0 family 58 444 1 33958 95489 Lactobacillaceae 9553 2767879 6 0 genus 1 0 species Lactobacillus crustorum 1345 392416 1370 Lactobacillus heilongjiangensis 1074467 species 0 1 Lactobacillus alimentarius 1840 1602 1 0 species 1007676 1432 Lactobacillus ginsenosidimutans species 0 1 0 species 1 1817 Lactobacillus farciminis 1612 0 species 1 1847728 1749 Lactobacillus allii 2 genus 0 2616 2767889 1416 Lactobacillus coryniformis 1610 species 0 1 Lactobacillus backii 1200 375175 1 0 species 3833 2767885 2 0 genus 1732 Lactobacillus curvatus 28038 species 0 1 species 0 1 1599 2101 Lactobacillus sakei 0 genus 4 2767887 16591 species 0 1 1601 1123 Lactobacillus agilis 0 species 1 1623 8169 Lactobacillus ruminis 89059 1569 Lactobacillus acidipiscis species 0 1 1 species 0 Lactobacillus salivarius 5730 1624 genus 0 1 1037 2767890 0 species 1 1037 Lactobacillus hokkaidonensis 1193095 2742598 4070 0 genus 3 97478 Lactobacillus mucosae 1055 1 species 0 Lactobacillus reuteri 2215 1598 1 0 species 1613 800 Lactobacillus fermentum 0 species 1 0 genus 3 3568 2767842 1589 Lactobacillus pentosus 946 1 0 species 0 species 1 665 Lactobacillus paraplantarum 60520 1590 Lactobacillus plantarum 1957 1 species 0 3 0 genus 2524 2767893 species 0 1 819 Lactobacillus buchneri 1581 Lactobacillus parabuchneri 649 152331 1 species 0 1056 Lactobacillus curieae 1138822 species 0 1 2767881 2018 2 genus 0 53444 Lactobacillus lindneri 1288 1 0 species 1625 Lactobacillus sanfranciscensis 730 1 0 species genus 0 3 2759736 5009 1 species 0 1582 Lactobacillus casei 2289 1570 Lactobacillus paracasei 1597 0 species 1 Lactobacillus rhamnosus 1150 47715 1 0 species 2465 16 0 genus Lactobacillus 30859 1578 1 0 species 1 33959 4530 Lactobacillus johnsonii Lactobacillus helveticus 2639 1587 1 species 0 2620435 2826 0 no rank 4 0 species 1 594 Lactobacillus sp. wkB8 1545702 1 0 species 2099789 Lactobacillus sp. CBA3606 758 2108362 608 Lactobacillus sp. D1501 species 0 1 1 species 0 2099788 Lactobacillus sp. CBA3605 866 1255 Lactobacillus acetotolerans 1600 species 0 1 83683 872 Lactobacillus amylolyticus 0 species 1 1 species 0 1579 Lactobacillus acidophilus 1677 species 0 1 109790 1139 Lactobacillus jensenii 52242 1468 Lactobacillus gallinarum 0 species 1 species 0 1 3095 Lactobacillus gasseri 1596 1584 3653 Lactobacillus delbrueckii species 0 1 2096 Lactobacillus kefiranofaciens 267818 species 0 1 1604 3144 Lactobacillus amylovorus 0 species 1 1 0 genus 2767876 3546 1 0 species Lactobacillus amylophilus 3546 1603 1 genus 0 2767892 912 species 0 1 912 Lactobacillus paracollinoides 240427 739 2767877 0 genus 1 739 Lactobacillus kunkeei 148814 species 0 1 6 37 genus 0 1253 1 Pediococcus 6536 187452 Pediococcus claussenii 1231 1 0 species 0 species 1 1475 Pediococcus damnosus 51663 1 species group 0 1163 1670797 1254 1163 Pediococcus acidilactici 0 species 1 species 0 1 952 Pediococcus inopinatus 114090 1255 Pediococcus pentosaceus 1678 1 0 species 2767886 1634 genus 0 3 1580 822 Lactobacillus brevis 0 species 1 267363 354 Lactobacillus zymae 0 species 1 0 species 1 458 Lactobacillus koreensis 637971 815 266 0 order Bacillales 486230 1385 1 8243 539002 9 0 no rank 539742 4481 0 no rank 7 7 99 0 genus 33986 1 Exiguobacterium 4481 132920 722 Exiguobacterium antarcticum species 0 1 4 no rank 0 2644629 2736 1849031 Exiguobacterium sp. U13-1 671 1 species 0 1 species 0 Exiguobacterium sp. MH3 699 1399115 species 0 1 646 Exiguobacterium sp. ZWU0009 1224749 720 Exiguobacterium sp. AT1b 360911 0 species 1 924 Exiguobacterium sibiricum 332410 species 0 1 539738 3762 2 no rank 0 genus 0 5 2 1 1378 3762 Gemella 3757 2624949 1 no rank 0 1 0 species 1785995 Gemella sp. oral taxon 928 3757 111198 Paenibacillaceae 1 186822 family 0 46 369 no rank 0 3 85151 3642 55079 1 Aneurinibacillus 3642 31 3 genus 0 Aneurinibacillus soli 2211 1500254 1 species 0 0 no rank 1 1400 2642329 1450761 Aneurinibacillus sp. XH2 1400 1 species 0 0 genus 2 17 1 76632 2301 Thermobacillus 377615 Thermobacillus composti 2284 1 species 0 0 genus 912 36 1 44249 96958 Paenibacillus 1126833 Paenibacillus beijingensis 2014 1 species 0 species 0 1 2376 Paenibacillus graminis 189425 1929 Paenibacillus odorifer 189426 species 0 1 2647 Paenibacillus larvae 1464 0 species 1 Paenibacillus bovis 2832 1616788 1 0 species 1462996 Paenibacillus yonginensis 2390 1 species 0 species 0 1 44251 3890 Paenibacillus durus 4133 Paenibacillus stellifer 169760 0 species 1 0 species 1 2386 Paenibacillus naphthalenovorans 162209 1 0 species Paenibacillus sabinae 2338 365617 59893 Paenibacillus peoriae 1958 1 0 species Paenibacillus xylanexedens 2476 528191 1 species 0 1 species 0 1763538 Paenibacillus crassostreae 1790 1178515 962 Paenibacillus swuensis species 0 1 1 0 species 160799 Paenibacillus borealis 3377 1 0 species 61624 Paenibacillus mucilaginosus 4455 species 0 1 172713 1899 Paenibacillus kribbensis 2183 Paenibacillus terrae 159743 species 0 1 13 0 no rank 185978 34280 1 species 0 481743 Paenibacillus sp. Y412MC10 2255 Paenibacillus sp. 32O-W 1880 1695218 1 0 species 1566358 Paenibacillus sp. IHBB 10380 1471 1 species 0 1 0 species Paenibacillus sp. JDR-2 2008 324057 Paenibacillus sp. FSL R7-0331 3590 1536773 1 0 species Paenibacillus sp. BIHB4019 1738 1870819 1 0 species 1 species 0 Paenibacillus sp. lzh-N1 1644 2069255 1536770 2520 Paenibacillus sp. FSL R5-0345 0 species 1 species 0 1 1536774 3277 Paenibacillus sp. FSL H7-0357 1536771 Paenibacillus sp. FSL R5-0912 3678 1 0 species 0 species 1 1536769 4109 Paenibacillus sp. FSL P4-0081 species 0 1 3756 Paenibacillus sp. FSL R7-0273 1536772 Paenibacillus sp. FSL H7-0737 2354 1536775 1 species 0 species 0 1 3297 Paenibacillus donghaensis 414771 2044880 3282 1 0 species group Paenibacillus riograndensis 3282 483937 1 0 species species 0 1 6681 Paenibacillus polymyxa 1406 0 species 1 1870820 2471 Paenibacillus ihbetae 0 genus 60 4 7928 Brevibacillus 1 55080 1 species 0 Brevibacillus formosus 1533 54913 2831 Brevibacillus brevis 1393 0 species 1 0 species 1 1465 3504 Brevibacillus laterosporus 186821 1 Sporolactobacillaceae 1383 2 1 family 0 663587 1382 1 0 no rank 85683 [Bacillus] selenitireducens 1382 1 0 species 118 613 0 family 186817 1 Bacillaceae 219937 10674 Virgibacillus 1 84406 genus 0 7 45 0 species 1 1914 Virgibacillus necropolis 163877 3971 2620237 2 no rank 0 0 species 1 1564 Virgibacillus sp. SK37 403957 1911587 2407 Virgibacillus sp. 6R 0 species 1 0 species 1 1229 Virgibacillus phasianinus 2017483 1907 Virgibacillus halodenitrificans 1482 0 species 1 1 0 species 1473 Virgibacillus pantothenticus 1608 29331 1 Amphibacillus 1971 4 2 0 genus 1449 Amphibacillus xylanus 1967 1 0 species 150247 1 Anoxybacillus 6880 37 6 0 genus 0 species 1 198467 1172 Anoxybacillus gonensis 858 Anoxybacillus amylolyticus 294699 0 species 1 2639704 2811 2 no rank 0 1 species 0 1490052 Anoxybacillus sp. B2M1 1407 1404 Anoxybacillus sp. B7M1 1490057 species 0 1 Anoxybacillus flavithermus 2002 33934 1 species 0 142 5 genus 0 400634 1 Lysinibacillus 11629 Lysinibacillus fusiformis 1791 28031 1 0 species 1 0 species 1145276 Lysinibacillus varians 1869 1 0 no rank 2636778 2251 0 species 1 2251 Lysinibacillus sp. YS11 2072025 1421 Lysinibacillus sphaericus 5576 1 species 0 351195 1119 1 0 genus 0 species 1 1230341 1119 Salimicrobium jeotgali 182709 1 Oceanobacillus 3588 4 2 0 genus 1 0 species 182710 Oceanobacillus iheyensis 3584 5 genus 0 8377 2675234 0 species 1 2216 Bacillus clausii 79880 300825 1395 Bacillus lehensis 0 species 1 79885 Bacillus pseudofirmus 1492 1 0 species 1 species 0 Bacillus krulwichiae 2057 199441 1 0 species 86665 Bacillus halodurans 1217 2 21 0 genus Terribacillus 1667 459532 1 1 0 species 586416 Terribacillus aidingensis 1646 0 genus 3 9 3545 Fictibacillus 1 1329200 255247 Fictibacillus arsenicus 2055 1 species 0 1221500 1481 Fictibacillus phosphorivorans 0 species 1 1542 Parageobacillus 1 1906945 0 genus 2 7 1426 1535 Parageobacillus thermoglucosidasius 0 species 1 5470 2675229 genus 0 2 264697 1664 Bacillus muralis 0 species 1 3806 Bacillus simplex 1478 0 species 1 2 0 genus 4898 2675230 859143 Bacillus kochii 2431 1 0 species 1 0 species Bacillus oceanisediminis 2467 665099 genus 0 2 3354 45667 0 species 1 1720 Halobacillus mangrovi 402384 Halobacillus halophilus 1634 1570 1 species 0 genus 0 19 2 1 175304 1444 Lentibacillus species 0 1 1425 Lentibacillus amyloliquefaciens 1472767 1 0 genus 1598 1055323 species 0 1 1598 Aeribacillus pallidus 33936 Geobacillus 10913 129337 1 15 531 0 genus 1921421 Geobacillus genomosp. 3 757 1 species 0 33940 Geobacillus thermodenitrificans 1026 1 0 species 1422 Geobacillus stearothermophilus 834 1 species 0 3753 2642459 6 0 no rank species 0 1 1015 Geobacillus sp. WCH70 471223 Geobacillus sp. Y412MC52 235 550542 1 species 0 1 0 species 581103 Geobacillus sp. Y4.1MC1 1497 1 species 0 691437 Geobacillus sp. C56-T3 411 1233873 338 Geobacillus sp. GHH01 species 0 1 0 species 1 257 Geobacillus sp. Y412MC61 544556 1505648 3006 species group 0 4 Geobacillus thermocatenulatus 514 33938 1 0 species 1 species 0 Geobacillus kaustophilus 390 1462 1 0 species 169283 Geobacillus lituanicus 714 Geobacillus thermoleovorans 1388 33941 1 0 species 1 0 species Geobacillus subterraneus 1006 129338 140655 Bacillus 1 1386 0 genus 6026 58 1 species 0 632773 Bacillus beveridgei 1061 324767 Bacillus infantis 1919 1 species 0 1806 Bacillus aryabhattai 412384 species 0 1 0 species 1 1841 Bacillus flexus 86664 0 species 1 1193 Bacillus xiamenensis 1178537 0 species 1 1398 3284 Bacillus coagulans 19 no rank 0 18855 185979 1 species 0 Bacillus sp. H15-1 1531 1856406 0 species 1 1127744 788 Bacillus sp. JS species 0 1 1589 Bacillus sp. IHB B 7164 1827146 1 0 species Bacillus sp. Pc3 525 1446792 Bacillus sp. MD-5 762 2009331 1 0 species 2049935 286 Bacillus sp. Lzh-5 species 0 1 1 species 0 Bacillus sp. SDLI1 892 1774743 1 0 species 1628753 Bacillus sp. LM 4-2 377 species 0 1 756828 1482 Bacillus sp. WP8 1 species 0 Bacillus sp. YP1 541 1574141 1 species 0 Bacillus sp. 1s-1 1531 2026248 1 0 species 1837130 Bacillus sp. FJAT-14266 840 1 0 species 1570330 Bacillus sp. BH072 226 1941347 Bacillus sp. 275 689 1 species 0 2227 Bacillus sp. 1NLA3E 666686 0 species 1 98228 Bacillus sp. OxB-1 1442 1 0 species 1409 Bacillus sp. (in: Bacteria) 347 1 0 species 1 0 species Bacillus sp. X1(2014) 2203 1565991 563169 577 Bacillus sp. SJ-10 species 0 1 Bacillus horikoshii 1504 79883 1 0 species 1 species group 0 1680 1792192 1 species 0 293387 Bacillus altitudinis 1680 135735 3129 Bacillus endophyticus species 0 1 1 0 species Bacillus safensis 3533 561879 1 species 0 1471 Bacillus methanolicus 1337 1 0 species Bacillus cohnii 2720 33932 1404 Bacillus megaterium 4270 1 0 species 0 species 1 1907 Bacillus glycinifermentans 1664069 0 species 1 2488 Bacillus weihaiensis 1547283 1 0 species Bacillus gibsonii 210 79881 6746 Bacillus pumilus 1408 0 species 1 49915 86661 10 0 species group 1 species 0 580165 Bacillus cytotoxicus 2532 1405 6889 Bacillus mycoides 0 species 1 species 0 1 16682 Bacillus cereus 1396 1290 Bacillus anthracis 1392 0 species 1 155322 Bacillus toyonensis 1613 1 0 species 2750818 5599 3 no rank 0 1892404 Bacillus sp. ABP14 1698 1 species 0 2053832 1715 Bacillus sp. HBCD-sjtu species 0 1 0 species 1 1839798 2186 Bacillus sp. FDAARGOS_235 0 species 1 1428 13591 Bacillus thuringiensis 1719 Bacillus bombysepticus 658666 0 species 1 653685 22106 0 species group 9 species 0 1 1540 Bacillus atrophaeus 1452 0 species 1 1402 2239 Bacillus licheniformis 0 species subgroup 3 1938374 5854 Bacillus amyloliquefaciens 2578 1390 1 species 0 492670 2466 Bacillus velezensis 0 species 1 659243 810 Bacillus siamensis species 0 1 1648923 2338 Bacillus paralicheniformis species 0 1 1 0 species 1423 Bacillus subtilis 7674 species 0 1 2062 Bacillus sonorensis 119858 72361 Bacillus vallismortis 399 1 species 0 1413 1765 Bacillus cellulosilyticus 0 species 1 1479 Bacillus smithii 1360 1 0 species 1 186823 6219 Alicyclobacillaceae family 0 9 43 Kyrpidia 1151 1129704 1 3 14 0 genus 655 Kyrpidia tusciae 33943 species 0 1 species 0 1 2055160 482 Kyrpidia sp. EA-1 1 29330 1849 Alicyclobacillus genus 0 2 30 405212 Alicyclobacillus acidocaldarius 1819 1 species 0 1 432330 3176 Tumebacillus genus 0 3 18 1289 Tumebacillus algifaecis 1214604 0 species 1 1869 Tumebacillus avium 1903704 0 species 1 1 186820 17841 Listeriaceae 0 family 48 9 15499 Listeria 1 1637 0 genus 6 90 3224 Listeria ivanovii 1638 0 species 1 2727 Listeria welshimeri 1643 0 species 1 1639 5798 Listeria monocytogenes species 0 1 1611 Listeria innocua 1642 species 0 1 1640 Listeria seeligeri 2049 1 0 species Brochothrix 2294 2755 1 2 4 genus 0 Brochothrix thermosphacta 2290 2756 1 0 species 26 79 0 family 186818 1 Planococcaceae 33177 genus 0 3 2 2217 Jeotgalibacillus 1 157226 1 0 species Jeotgalibacillus malaysiensis 2214 1508404 0 genus 287 12 14635 Planococcus 1 1372 Planococcus rifietoensis 1036 200991 1 species 0 1591 Planococcus donghaensis 414778 species 0 1 species 0 1 1038856 649 Planococcus plakortidis 1004 Planococcus antarcticus 161360 species 0 1 species 0 1 1465 Planococcus faecalis 1598147 2662419 2320 no rank 0 2 2058136 Planococcus sp. MB-3u-03 1122 1 0 species 1 0 species 1526927 Planococcus sp. PAMC 21323 1198 Planococcus sp. L10.15 1132 1302659 1 species 0 Planococcus halocryophilus 1252 1215089 1 species 0 Planococcus maritimus 2448 192421 1 species 0 1451 Planococcus kocurii 1374 species 0 1 1414 648802 1 genus 0 Rummeliibacillus stabekisii 1414 241244 1 species 0 genus 0 5 2 1 1649 2706 Kurthia 2701 2644826 no rank 0 1 Kurthia sp. 11kri321 2701 1750719 1 species 0 1569 1 Sporosarcina 8300 5 55 0 genus 0 species 1 1476 1291 Sporosarcina psychrophila 0 species 1 3853 Sporosarcina ureae 1571 no rank 0 2 3101 2647733 species 0 1 1506 Sporosarcina sp. P37 1930546 species 0 1 1930764 1595 Sporosarcina sp. P33 648800 1 Solibacillus 3826 3 27 genus 0 76853 Solibacillus silvestris 2032 1 0 species 1767 2637870 1 0 no rank Solibacillus sp. R5-41 1767 2048654 1 species 0 1509 Thermoactinomycetaceae 1 186824 0 family 4 2 0 genus 1 292635 9 Laceyella 1 1677050 1498 Novibacillus 0 genus 101 2 0 species 1 1471761 1397 Novibacillus thermophilus family 0 2141 42 1 90964 85908 Staphylococcaceae 2005363 1 Auricoccucs 1645 2 2 genus 0 species 0 1 1849491 1643 Auricoccus indicus genus 0 33 1320 1 1279 73334 Staphylococcus 1 species 0 643214 Staphylococcus stepanovicii 1895 985762 Staphylococcus agnetis 1318 1 species 0 1286 Staphylococcus simulans 1762 1 species 0 1 species 0 1282 Staphylococcus epidermidis 3316 1 species 0 Staphylococcus warneri 2451 1292 species 0 1 1284 1186 Staphylococcus hyicus species 0 1 70255 1980 Staphylococcus condimenti 1 species 0 Staphylococcus haemolyticus 2190 1283 1 species 0 Staphylococcus nepalensis 2178 214473 0 species 1 283734 2319 Staphylococcus pseudintermedius species 0 1 1622 Staphylococcus carnosus 1281 1723 Staphylococcus lugdunensis 28035 species 0 1 1294 1038 Staphylococcus muscae 0 species 1 species 0 1 2204 Staphylococcus equorum 246432 Staphylococcus lutrae 1334 155085 1 0 species 1295 1849 Staphylococcus schleiferi 0 species 1 61015 2135 Staphylococcus succinus species 0 1 0 species 1 45972 4602 Staphylococcus pasteuri 46127 1597 Staphylococcus felis 0 species 1 Staphylococcus argenteus 2107 985002 1 0 species Staphylococcus cohnii 2126 29382 1 species 0 Staphylococcus pettenkoferi 1200 170573 1 species 0 1280 Staphylococcus aureus 8564 1 0 species 1808 Staphylococcus kloosii 29384 0 species 1 0 species 1 2341 Staphylococcus hominis 1290 1 0 species Staphylococcus capitis 1806 29388 1578 91994 0 no rank 1 Staphylococcus sp. AntiMn-1 1578 1715860 1 species 0 1 species 0 Staphylococcus sciuri 2355 1296 species 0 1 3485 Staphylococcus xylosus 1288 2210 Staphylococcus saprophyticus 29385 species 0 1 Staphylococcus piscifermentans 1202 70258 1 0 species 0 species 1 308354 2533 Staphylococcus simiae 1753 Salinicoccus 1 45669 0 genus 2 2 1 species 0 407035 Salinicoccus halodurans 1751 0 genus 33 4 1 69965 7035 Macrococcus 1 0 species 1855823 Macrococcus canis 1912 species 0 1 2960 Macrococcus caseolyticus 69966 2130 2619255 no rank 0 1 1 0 species 1898474 Macrococcus sp. IME1552 2130 0 no rank 2 1519 33974 0 genus 14 2 1 1930845 1519 Ndongobacter 0 species 1 1505 Ndongobacter massiliensis 1871025 4277140 Actinobacteria 1 201174 phylum 0 76 650 1493 Rubrobacteria 1 84995 class 0 6 15 1 84996 1478 Rubrobacterales 0 order 5 20 4 5 0 family Rubrobacteraceae 1458 84997 1 0 genus 49 3 1453 Rubrobacter 1 42255 Rubrobacter radiotolerans 336 42256 1 species 0 0 species 1 1068 Rubrobacter xylanophilus 49319 1752188 1089 no rank 0 4 Actinobacteria bacterium IMCC26103 242 1848756 1 0 species 1848754 383 Actinobacteria bacterium IMCC19121 0 species 1 295 Actinobacteria bacterium IMCC25003 1848255 species 0 1 169 Actinobacteria bacterium IMCC26077 1848755 species 0 1 7 1 0 class Acidimicrobiia 837 84992 1 Acidimicrobiales 836 84993 1 6 36 0 order 125 Acidimicrobiaceae 1 84994 family 0 3 1 Acidimicrobium 124 53634 1 1 2 0 genus 0 species 1 53635 123 Acidimicrobium ferrooxidans 2 0 family 675 2448023 682522 1 Ilumatobacter 675 21 2 0 genus species 0 1 654 Ilumatobacter coccineus 467094 1497346 1248 class 0 4 588673 1 Solirubrobacterales 1248 4 59 0 order 1 320583 1189 Conexibacteraceae family 0 3 8 1 191494 1181 Conexibacter genus 0 2 20 1 0 species Conexibacter woesei 1161 191495 1760 1 Actinobacteria 3932211 595 8883 0 class 85014 1 Glycomycetales 1409 1 4 order 0 1408 Glycomycetaceae 1 85034 family 0 71 3 8 2 0 genus 283810 1 Stackebrandtia 1337 1 species 0 283811 Stackebrandtia nassauensis 1329 1 85008 18630 Micromonosporales 0 order 20 37 family 0 281 19 18593 Micromonosporaceae 1 28056 673534 1 Plantactinospora 3917 4 48 0 genus 2631981 3869 no rank 0 3 1205 Plantactinospora sp. KBS50 2024580 0 species 1 1360 Plantactinospora sp. BC1 2108470 0 species 1 2071627 Plantactinospora sp. BB1 1304 1 species 0 Salinispora 1881 168694 1 3 8 0 genus 1 0 species Salinispora tropica 593 168695 0 species 1 1280 Salinispora arenicola 168697 0 genus 169 6 1 1865 8571 Actinoplanes 196914 Actinoplanes friuliensis 1636 1 0 species 1688 Actinoplanes missouriensis 1866 0 species 1 2626549 5078 3 0 no rank 1 0 species 649831 Actinoplanes sp. N902-109 1873 species 0 1 2033844 1603 Actinoplanes sp. SE50 134676 Actinoplanes sp. SE50/110 1602 1 species 0 84593 Verrucosispora 4 1 0 genus 1 1873 3939 Micromonospora 0 genus 62 4 no rank 0 1 1649 2617518 1649 Micromonospora sp. L5 648999 species 0 1 1 0 species Micromonospora aurantiaca 1363 47850 1003110 865 Verrucosispora maris 0 species 1 1 85013 4359 Frankiales 0 order 7 22 56 6 family 0 Frankiaceae 4337 74712 1 genus 0 5 53 4281 Frankia 1 1854 106370 592 Frankia casuarinae species 0 1 1197 2632575 1 no rank 0 298653 Frankia sp. EAN1pec 1197 1 0 species 298654 Frankia inefficax 1376 1 species 0 1 species 0 1859 Frankia alni 1063 85009 1 Propionibacteriales 22343 81 34 order 0 20 164 family 0 31957 1 Propionibacteriaceae 15789 3 45 0 genus Propionibacterium 2691 1743 1 2608905 504 no rank 0 1 1 species 0 671223 Propionibacterium sp. oral taxon 193 504 Propionibacterium freudenreichii 2142 1744 1 species 0 757 2801844 1 genus 0 1 species 0 Pseudopropionibacterium propionicum 757 1750 72763 1 Tessaracoccus 4479 5 24 0 genus Tessaracoccus aquimaris 1247 1332264 1 0 species no rank 0 1 2635419 1342 1342 Tessaracoccus sp. T2.5-30 1909732 species 0 1 0 species 1 1026 Tessaracoccus flavescens 399497 1610493 840 Tessaracoccus flavus species 0 1 genus 0 5 2 1 29404 712 Microlunatus species 0 1 29405 707 Microlunatus phosphovorus Acidipropionibacterium 1230 1912215 1 2 13 genus 0 0 species 1 1217 Acidipropionibacterium acidipropionici 1748 3924 Cutibacterium 1 1912216 0 genus 4 17 33010 983 Cutibacterium avidum species 0 1 species 0 1 33011 474 Cutibacterium granulosum species 0 1 1747 2450 Cutibacterium acnes genus 0 2 2 1 203133 1832 Propionimicrobium 0 no rank 1 2633994 1830 1 species 0 1871034 Propionimicrobium sp. Marseille-P3275 1830 family 0 164 13 6473 Nocardioidaceae 1 85015 629 Aeromicrobium 1 2040 0 genus 19 2 1 species 0 2041 Aeromicrobium erythreum 610 2 6 genus 0 116071 1 Micropruina 880 1 0 species 75385 Micropruina glycogenica 874 0 genus 7 2 1 2044 1113 Pimelobacter Pimelobacter simplex 1106 2045 1 0 species 182639 1 Kribbella 1096 2 39 0 genus Kribbella flavida 1057 182640 1 0 species 57 4 0 genus 1839 1 Nocardioides 2591 1 0 no rank 2615069 865 species 0 1 865 Nocardioides sp. JS614 196162 450734 876 Nocardioides dokdonensis 0 species 1 793 Nocardioides sp. 78 2045452 species 0 1 Bifidobacteriales 3493256 85004 1 25 233 0 order 0 family 11588 24 1 31953 3493023 Bifidobacteriaceae 1 0 genus 1107 196082 Parascardovia denticolens 1107 78258 1 species 0 851 196081 1 genus 0 78259 Scardovia inopinata 851 1 0 species 2701 1 Gardnerella 1712 7 2 0 genus 1 species 0 Gardnerella vaginalis 1705 2702 genus 0 2501 19 1 1678 3477765 Bifidobacterium 28026 Bifidobacterium pseudocatenulatum 1005124 1 0 species species 0 1 8874 Bifidobacterium dentium 1689 28025 Bifidobacterium animalis 2951 1 species 0 Bifidobacterium bifidum 286423 1681 1 0 species Bifidobacterium choerinum 2271 35760 1 0 species 3477 Bifidobacterium pseudolongum 1694 0 species 1 Bifidobacterium thermophilum 4095 33905 1 species 0 1 0 species 216816 Bifidobacterium longum 752291 1 0 species Bifidobacterium breve 108334 1685 158787 Bifidobacterium scardovii 4337 1 species 0 1183 Bifidobacterium asteroides 1684 0 species 1 795 Bifidobacterium indicum 1691 species 0 1 Bifidobacterium actinocoloniiforme 1275 638619 1 species 0 1 species 0 Bifidobacterium adolescentis 892142 1680 Bifidobacterium coryneforme 694 1687 1 species 0 1683 29224 Bifidobacterium angulatum species 0 1 2 119128 species 0 1686 1 Bifidobacterium catenulatum 371774 1 subspecies 0 Bifidobacterium kashiwanohense 252646 630129 85007 1 Corynebacteriales 108515 162 836 order 0 1653 1 Corynebacteriaceae 37940 52 350 family 0 Corynebacterium 37590 1716 1 1144 51 0 genus 831 Corynebacterium uterequi 1072256 0 species 1 0 species 1 705 Corynebacterium diphtheriae 1717 160386 Corynebacterium casei 611 1 species 0 1 species 0 Corynebacterium deserti 591 1408191 1 0 species Corynebacterium phocae 495 161895 1 species 0 Corynebacterium marinum 638 349751 Corynebacterium singulare 797 161899 1 species 0 152794 911 Corynebacterium efficiens 0 species 1 487 Corynebacterium argentoratense 42817 species 0 1 Corynebacterium humireducens 810 1223514 1 0 species 546 Corynebacterium maris 575200 0 species 1 1 0 species Corynebacterium variabile 840 1727 1705 899 Corynebacterium stationis 0 species 1 1 0 species Corynebacterium kroppenstedtii 261 161879 Corynebacterium glutamicum 1125 1718 1 species 0 species 0 1 262 Corynebacterium cystitidis 35757 1 0 species 187491 Corynebacterium glaucum 592 384 Corynebacterium crudilactis 1652495 0 species 1 1 species 0 1230998 Corynebacterium frankenforstense 980 species 0 1 203263 713 Corynebacterium aquilae 469 Corynebacterium testudinoris 136857 species 0 1 906 Corynebacterium halotolerans 225326 species 0 1 1 0 species 1721 Corynebacterium callunae 727 0 species 1 401472 449 Corynebacterium ureicelerivorans species 0 1 571915 235 Corynebacterium mustelae 667 Corynebacterium camporealensis 161896 species 0 1 species 0 1 38289 1442 Corynebacterium jeikeium 1 species 0 [Brevibacterium] flavum 486 92706 28028 Corynebacterium flavescens 350 1 species 0 species 0 1 1294 Corynebacterium simulans 146827 1 species 0 Corynebacterium glyciniphilum 918 1404244 89154 Corynebacterium terpenotabidum 561 1 species 0 1 species 0 Corynebacterium pseudotuberculosis 639 1719 1 0 species 1121358 Corynebacterium doosanense 707 species 0 1 1009 Corynebacterium sphenisci 191493 1 species 0 43771 Corynebacterium urealyticum 747 1 0 species 169292 Corynebacterium aurimucosum 1225 777 Corynebacterium lactis 1231000 0 species 1 1 0 species 65058 Corynebacterium ulcerans 735 1 0 species 156978 Corynebacterium imitans 834 293 Corynebacterium resistens 258224 0 species 1 1050174 426 Corynebacterium epidermidicanis species 0 1 0 species 1 578 Corynebacterium atypicum 191610 1 0 species Corynebacterium falsenii 910 108486 2624378 1128 2 0 no rank species 0 1 514 Corynebacterium sp. NML98-0116 702967 Corynebacterium sp. ATCC 6931 614 1487956 1 0 species 1 0 species 38305 Corynebacterium vitaeruminis 1890 species 0 1 1795 Corynebacterium striatum 43770 Corynebacterium kutscheri 169 35755 1 species 0 Corynebacterium ammoniagenes 602 1697 1 0 species 85025 1 Nocardiaceae 23649 31 160 0 family 14080 Rhodococcus 1 1827 0 genus 512 23 species 0 1 742 Rhodococcus ruber 1830 12 no rank 0 192944 5935 583 Rhodococcus sp. MTM3W5.2 1805827 species 0 1 1 0 species 1653478 Rhodococcus sp. PBTS 1 610 1 0 species 1033922 Rhodococcus sp. WB1 809 1045808 411 Rhodococcus sp. YL-1 species 0 1 1653479 727 Rhodococcus sp. PBTS 2 species 0 1 Rhodococcus sp. p52 310 935199 1 0 species 1570939 266 Rhodococcus sp. 2G species 0 1 1807790 Rhodococcus sp. BH4 440 1 species 0 1723645 Rhodococcus sp. 008 338 1 0 species 1 species 0 1727214 Rhodococcus sp. H-CA8f 441 352 Rhodococcus sp. WMMA185 679318 0 species 1 1564114 648 Rhodococcus sp. B7740 0 species 1 1 0 species Rhodococcus pyridinivorans 340 103816 672 Rhodococcus erythropolis 1833 species 0 1 191292 769 Rhodococcus aetherivorans species 0 1 1 species 0 1829 Rhodococcus rhodochrous 392 1828 742 Rhodococcus fascians 0 species 1 43767 Rhodococcus hoagii 738 1 0 species 1 species 0 Rhodococcus qingshengii 580 334542 1 species 0 Rhodococcus opacus 1688 37919 132919 970 Rhodococcus jostii species 0 1 Nocardia 9409 1817 1 149 7 0 genus 0 species 1 1985 Nocardia brasiliensis 37326 1 0 species Nocardia seriolae 1422 37332 455432 1378 Nocardia terpenica 0 species 1 1099 Nocardia nova 37330 0 species 1 Nocardia farcinica 1398 37329 1 species 0 135487 1978 Nocardia cyriacigeorgica 0 species 1 697024 600 2 no rank 0 1847725 1 Lawsonella 600 2 10 genus 0 1 0 species Lawsonella clevelandensis 590 1528099 1491 Tsukamurellaceae 1 85028 0 family 4 24 1 2060 1467 Tsukamurella 0 genus 13 3 57704 840 Tsukamurella tyrosinosolvens species 0 1 1 species 0 2061 Tsukamurella paurometabola 614 0 family 53 9 4773 Gordoniaceae 1 85026 94 8 genus 0 Gordonia 4720 2053 1 species 0 1 600 Gordonia terrae 2055 0 species 1 767 Gordonia phthalatica 1136941 no rank 0 2 1192 2657482 509 Gordonia sp. YC-JH1 2059875 species 0 1 337191 Gordonia sp. KTR9 683 1 0 species 1 0 species Gordonia polyisoprenivorans 853 84595 548 Gordonia bronchialis 2054 0 species 1 Gordonia iterans 666 1004901 1 species 0 189 56 0 family 1762 1 Mycobacteriaceae 37556 13 genus 0 11677 1866885 1771 Mycobacterium phlei 1022 1 species 0 1 species 0 1804 Mycobacterium gilvum 873 1772 Mycobacterium smegmatis 1271 1 species 0 1 species 0 134601 Mycobacterium goodii 984 1 0 species 1795 Mycobacterium neoaurum 850 Mycobacterium vaccae 854 1810 1 species 0 species 0 1 1791 1254 Mycobacterium aurum 822 Mycobacterium chubuense 1800 species 0 1 1 0 species Mycobacterium vanbaalenii 682 110539 Mycobacterium litorale 976 758802 1 species 0 species 0 1 799 Mycobacterium thermoresistibile 1797 1766 Mycobacterium fortuitum 680 1 species 0 36814 610 Mycobacterium rhodesiae species 0 1 5 genus 0 670516 3232 Mycobacterium abscessus 1024 36809 1 0 species Mycobacterium immunogenum 516 83262 1 species 0 1 0 species 1520670 Mycobacterium stephanolepidis 504 species 0 1 1578165 566 Mycobacterium saopaulense Mycobacterium chelonae 622 1774 1 species 0 1429 34 genus 0 1763 1 Mycobacterium 20956 species 0 1 377 Mycobacterium haemophilum 29311 0 species 1 183 Mycobacterium leprae 1769 species 0 1 261524 495 Mycobacterium liflandii 633 2249310 1 0 species group 722731 Mycobacterium shigaense 633 1 0 species 4323 120793 species group 0 8 701042 515 Mycobacterium marseillense 0 species 1 1764 1386 Mycobacterium avium species 0 1 1 0 species 1138383 Mycobacterium paraintracellulare 166 Mycobacterium intracellulare 1373 1767 1 4 338 species 0 1 subspecies 0 35617 Mycobacterium indicus pranii 232 subspecies 0 1 251 Mycobacterium yongonense 1203599 0 subspecies 1 552 Mycobacterium chimaera 222805 Mycobacterium colombiense 883 339268 1 0 species 0 no rank 13 2642494 9009 1 species 0 Mycobacterium sp. EPa45 638 1545728 0 species 1 924 Mycobacterium sp. YC-RL4 1682113 630 Mycobacterium sp. VKM Ac-1817D 1273687 0 species 1 833 Mycobacterium sp. PYR15 2051552 0 species 1 590 Mycobacterium sp. QIA-37 1561223 species 0 1 1 0 species 164756 Mycobacterium sp. MCS 595 species 0 1 611 Mycobacterium sp. KMS 189918 1920667 695 Mycobacterium sp. WY10 0 species 1 0 species 1 844 Mycobacterium sp. JS623 212767 species 0 1 850 Mycobacterium sp. NRRL B-3805 1570328 species 0 1 123 Mycobacterium sp. MOTT36Y 1168287 1879023 1142 Mycobacterium sp. djl-10 species 0 1 Mycobacterium sp. JLS 534 164757 1 species 0 Mycobacterium kansasii 1029 1768 1 0 species 1 species 0 Mycobacterium ulcerans 622 1809 0 species 1 1781 713 Mycobacterium marinum 0 species group 4 1398 77643 3 401 species 0 Mycobacterium tuberculosis 1070 1773 1 1 0 biotype 33894 Mycobacterium africanum 330 1765 339 Mycobacterium bovis 0 biotype 1 Mycobacterium canettii 328 78331 1 species 0 482462 745 Mycobacterium dioxanotrophicus 0 species 1 genus 0 2 1073531 1192 1 0 species Mycobacterium terrae 623 1788 875328 569 Mycobacterium sinense species 0 1 310 697025 genus 0 1 species 0 1 639313 310 Hoyosella subflava family 0 3 23 1 316606 441 Segniliparaceae 9 2 0 genus 286801 1 Segniliparus 418 0 species 1 286802 409 Segniliparus rotundus Dietziaceae 1229 85029 1 13 4 0 family 1216 Dietzia 1 37914 genus 0 13 3 0 no rank 1 2617939 514 1 species 0 712270 Dietzia sp. oral taxon 368 514 Dietzia timorensis 689 499555 1 0 species order 0 144 906 1 85006 84176 Micrococcales 39 1263 0 family 1268 1 Micrococcaceae 37146 8478 Rothia 1 32207 genus 0 3 13 2047 Rothia dentocariosa 1542 1 species 0 6923 Rothia mucilaginosa 43675 0 species 1 genus 0 16 4 3034 Pseudarthrobacter 1 1742993 1 species 0 Pseudarthrobacter phenanthrenivorans 764 361575 1 species 0 Pseudarthrobacter chlorophenolicus 1080 85085 Pseudarthrobacter sulfonivorans 1174 121292 1 species 0 Neomicrococcus 2604 1868332 1 65 2 genus 0 1 species 0 556325 Neomicrococcus aestuarii 2539 Sinomonas 951 596707 1 1 2 genus 0 1 0 species Sinomonas atrocyanea 950 37927 350 2078575 genus 0 1 350 Arthrobacter sp. IHBB 11108 1618207 0 species 1 genus 0 1 1645 278 1646 278 Renibacterium salmoninarum 0 species 1 23 2 0 genus Micrococcus 1167 1269 1 species 0 1 1144 Micrococcus luteus 1270 1 1742989 1390 Glutamicibacter genus 0 5 2 Glutamicibacter arilaitensis 1385 256701 1 0 species 4 47 genus 0 Kocuria 2562 57493 1 72000 Kocuria rhizophila 876 1 0 species species 0 1 446860 938 Kocuria flava 71999 701 Kocuria palustris 0 species 1 genus 0 1 2 1 1742992 519 Paenarthrobacter 1 0 species Paenarthrobacter aurescens 518 43663 1663 1 Arthrobacter 14550 282 15 genus 0 1 species 0 656366 Arthrobacter alpinus 1633 37928 1336 Arthrobacter crystallopoietes species 0 1 12 0 no rank 235627 11299 0 species 1 1108 Arthrobacter sp. QXT-31 1357915 1771959 584 Arthrobacter sp. ATCC 21022 species 0 1 1118963 450 Arthrobacter sp. Rue61a 0 species 1 species 0 1 1529 Arthrobacter sp. LS16 1690248 1806905 785 Arthrobacter sp. ZXY-2 species 0 1 1 0 species 1704044 Arthrobacter sp. ERGS1:01 889 1 0 species 1494608 Arthrobacter sp. PAMC 25486 838 290399 Arthrobacter sp. FB24 885 1 species 0 1 0 species 1849032 Arthrobacter sp. U41 1258 1 0 species 2079227 Arthrobacter sp. PGP41 675 1 0 species Arthrobacter sp. YN 977 2020486 1 0 species 1652545 Arthrobacter sp. YC-RL1 1321 6 2 family 0 85018 1 Dermatophilaceae 430 1862 424 0 genus 1 species 0 1 1863 424 Dermatophilus congolensis 1 2 0 family 85022 1 Jonesiaceae 265 43673 264 genus 0 1 1 0 species Jonesia denitrificans 264 43674 85019 1 Brevibacteriaceae 1424 32 3 0 family 2 14 0 genus Brevibacterium 1392 1696 1 1378 Brevibacterium linens 1703 species 0 1 85021 1 Intrasporangiaceae 3529 21 9 family 0 genus 0 2 29 627 Intrasporangium 1 53357 1 0 species 53358 Intrasporangium calvum 598 2 1 genus 0 Janibacter 625 53457 1 857417 Janibacter indicus 624 1 species 0 2 28 genus 0 Arsenicicoccus 1190 267408 1 no rank 0 1 2663846 1162 1162 Arsenicicoccus sp. oral taxon 190 1658671 0 species 1 0 genus 26 2 1 265976 1066 Serinicoccus 0 species 1 1040 Serinicoccus sp. JLT9 1758689 family 0 47 264 1 85023 23347 Microbacteriaceae 1 1573 2567 Clavibacter 0 genus 6 169 Clavibacter michiganensis 2398 28447 1 5 516 species 0 Clavibacter capsici 498 1874630 1 subspecies 0 31963 Clavibacter nebraskensis 352 1 subspecies 0 1 subspecies 0 33014 Clavibacter insidiosus 337 subspecies 0 1 695 Clavibacter sepedonicus 31964 2 0 no rank 466 1655488 1655489 466 0 clade 2 466 529883 0 genus 2 0 species 1 191 Candidatus Rhodoluna planktonica 535712 275 Rhodoluna lacicola 529884 0 species 1 1 2 genus 0 1705353 1 Aurantimicrobium 404 708131 Aurantimicrobium minutum 403 1 0 species 0 genus 3 39 2094 Cryobacterium 1 69578 927 Cryobacterium arcticum 670052 0 species 1 0 no rank 1 1128 2649013 0 species 1 1978566 1128 Cryobacterium sp. LW097 2 3 genus 0 Microterricola 776 518733 1 773 Microterricola viridarii 412690 species 0 1 447237 855 genus 0 1 1 no rank 0 2626248 855 0 species 1 1795630 855 Frondihabitans sp. PAMC 28766 genus 0 33 4 1 2034 1973 Curtobacterium 69373 Curtobacterium pusillum 662 1 species 0 no rank 0 2 1278 257496 Curtobacterium sp. BH-2-1-1 567 1905847 1 species 0 species 0 1 711 Curtobacterium sp. MR_MD2014 1561023 0 genus 1 166 1434032 166 Pontimonas salivibrio 1159327 0 species 1 1 2 genus 0 Leifsonia 1511 110932 1 1575 Leifsonia xyli 1510 1 0 species 33882 1 Microbacterium 9497 14 216 genus 0 Microbacterium chocolatum 383 84292 1 species 0 36805 Microbacterium aurum 973 1 0 species no rank 0 8 2609290 5590 1 species 0 1938334 Microbacterium sp. TPU 3598 581 367477 593 Microbacterium sp. XT11 species 0 1 0 species 1 834 Microbacterium sp. PAMC 28756 1795053 1714373 Microbacterium sp. No. 7 947 1 0 species 1 0 species Microbacterium sp. CGR1 483 1696072 0 species 1 502 Microbacterium sp. 1.5R 1916917 2103230 903 Microbacterium sp. str. 'China' species 0 1 1 0 species Microbacterium sp. BH-3-3-3 747 1906742 2033 631 Microbacterium testaceum species 0 1 Microbacterium hominis 1049 162426 1 0 species 300019 Microbacterium paludicola 655 1 species 0 1 33886 730 Rathayibacter genus 0 3 3 1 0 species 145458 Rathayibacter toxicus 283 1 0 species 33888 Rathayibacter tritici 444 630 Cnuibacter 1 1759331 genus 0 1 2 Cnuibacter physcomitrellae 629 1619308 1 species 0 2 1 genus 0 33877 1 Agromyces 917 916 Agromyces aureus 453304 species 0 1 497 Microcella 1 337004 0 genus 1 2 0 species 1 496 Microcella alkaliphila 279828 521 Beutenbergiaceae 1 125316 family 0 3 1 2 16 0 genus Beutenbergia 520 84756 1 84757 Beutenbergia cavernae 504 1 0 species family 0 6 27 3046 Cellulomonadaceae 1 85016 Cellulomonas 3019 1707 1 96 5 genus 0 1711 1132 Cellulomonas flavigena 0 species 1 0 species 1 1708 739 Cellulomonas fimi 2620175 490 1 0 no rank 0 species 1 490 Cellulomonas sp. PSBB021 2003551 11 562 Cellulomonas gilvus 0 species 1 Sanguibacteraceae 1202 145360 1 8 3 family 0 1 60919 1194 Sanguibacter 0 genus 14 2 species 0 1 60920 1180 Sanguibacter keddieii Dermacoccaceae 2028 145357 1 7 29 0 family 673 Dermacoccus 1 57495 0 genus 2 1 1 species 0 1274 Dermacoccus nishinomiyaensis 672 genus 0 2 28 699 Kytococcus 1 57499 1 0 species 1276 Kytococcus sedentarius 671 10 2 genus 0 Luteipulveratus 627 745364 1 571913 Luteipulveratus mongoliensis 617 1 species 0 2 no rank 0 76 577468 Tropheryma 76 2038 1 2 2 genus 0 species 0 1 2039 74 Tropheryma whipplei family 0 11 68 5923 Dermabacteraceae 1 85020 1 43668 5090 Brachybacterium genus 0 143 6 0 species 1 43669 1089 Brachybacterium faecium 1 species 0 Brachybacterium ginsengisoli 996 1331682 species 0 1 2017485 944 Brachybacterium sp. VR2415 0 species 1 968 Brachybacterium sp. VM2412 2017484 950 2623841 0 no rank 1 950 Brachybacterium sp. P6-10-X1 1903186 species 0 1 472568 1 Devriesea 438 2 2 0 genus 0 species 1 472569 436 Devriesea agamarum 327 Dermabacter 1 36739 genus 0 3 2 1 species 0 Dermabacter vaginalis 324 1630135 51 9 family 0 Promicromonosporaceae 4333 85017 1 Xylanimonas 1093 186188 1 2 1 genus 0 Xylanimonas cellulosilytica 1092 186189 1 species 0 19 3 genus 0 254250 1 Isoptericola 1587 species 0 1 891 Isoptericola dokdonensis 372663 139208 677 Isoptericola variabilis 0 species 1 1 157920 1602 Cellulosimicrobium genus 0 3 24 species 0 1 1710 772 Cellulosimicrobium cellulans 1 no rank 0 2624466 806 Cellulosimicrobium sp. TH-20 806 1980001 1 species 0 0 order 34 16 1 85012 11667 Streptosporangiales 5 3 0 family Thermomonosporaceae 2131 2012 1 2 43 0 genus Thermomonospora 2126 2019 1 2020 Thermomonospora curvata 2083 1 species 0 family 0 99 7 1 83676 4228 Nocardiopsaceae 0 genus 3 2 1 83677 567 Thermobifida 2021 564 Thermobifida fusca species 0 1 42 4 genus 0 Nocardiopsis 3562 2013 1 1 species 0 Nocardiopsis gilva 1179 280236 species 0 1 1465 Nocardiopsis dassonvillei 2014 53437 876 Nocardiopsis alba species 0 1 0 family 5 52 1 2004 5274 Streptosporangiaceae 2000 1 Streptosporangium 2442 8 2 0 genus species 0 1 2434 Streptosporangium roseum 2001 2780 Nonomuraea 1 83681 genus 0 26 2 1 no rank 0 2593643 2754 1909395 Nonomuraea sp. ATCC 55076 2754 1 0 species no rank 0 1 52018 231 1650658 231 Actinobacteria bacterium IMCC26256 0 species 1 622452 1202 3 0 order 20 3 0 family 83778 1 Kineosporiaceae 1202 1 33981 1182 Kineococcus genus 0 2 5 1 species 0 Kineococcus radiotolerans 1177 131568 Pseudonocardiales 36062 85010 1 42 73 0 order 35989 Pseudonocardiaceae 1 2070 family 0 41 505 3873 Actinosynnema 1 40566 genus 0 3 89 42197 Actinosynnema pretiosum 1976 1 species 0 1808 Actinosynnema mirum 40567 0 species 1 Saccharomonospora 586 1851 1 2 3 genus 0 1 0 species Saccharomonospora viridis 583 1852 0 genus 92 6 1 65496 5013 Actinoalloteichus no rank 0 2 2644606 1944 2072503 Actinoalloteichus sp. AHMU CJ021 870 1 0 species 0 species 1 1612551 1074 Actinoalloteichus sp. GBA129-24 1 0 species Actinoalloteichus hoggarensis 1017 1470176 849 Actinoalloteichus hymeniacidonis 340345 0 species 1 1 0 species 1612552 Actinoalloteichus sp. ADI127-7 1111 1 43356 1958 Kutzneria 0 genus 2 10 0 species 1 43357 1948 Kutzneria albida 1 674734 1098 Alloactinosynnema 0 genus 2 9 0 no rank 1 2636053 1089 0 species 1 1653480 1089 Alloactinosynnema sp. L-07 1 2029 1251 Kibdelosporangium 0 genus 2 1 Kibdelosporangium phytohabitans 1250 860235 1 species 0 1813 1 Amycolatopsis 8667 133 7 0 genus 2362 2618356 no rank 0 2 1 0 species Amycolatopsis sp. AA4 1219 1896961 1911175 1143 Amycolatopsis sp. BJA-103 species 0 1 208439 1142 Amycolatopsis japonica 0 species 1 2165 Amycolatopsis orientalis 31958 0 species 1 1 0 species Amycolatopsis mediterranei 1760 33910 1814 1105 Amycolatopsis methanolica 0 species 1 13 2 genus 0 2071 1 Saccharothrix 1579 1566 Saccharothrix espanaensis 103731 species 0 1 2 18 genus 0 1835 1 Saccharopolyspora 1552 1 species 0 Saccharopolyspora erythraea 1534 1836 genus 0 214 8 1 1847 7718 Pseudonocardia species 0 1 990 Pseudonocardia dioxanivorans 240495 6 no rank 0 6514 2619320 910 Pseudonocardia sp. HH130630-07 1690815 0 species 1 1688404 Pseudonocardia sp. EC080610-09 1292 1 0 species 1276 Pseudonocardia sp. EC080619-01 1096856 species 0 1 Pseudonocardia sp. AL041005-10 1011 445576 1 0 species species 0 1 966 Pseudonocardia sp. HH130629-09 1641402 0 species 1 1096868 1059 Pseudonocardia sp. EC080625-04 2 3 0 genus Prauserella 692 142577 1 689 Prauserella marina 530584 0 species 1 1497 Lentzea 1 165301 0 genus 23 2 species 0 1 1586287 1474 Lentzea guizhouensis 1 2039638 3785 Candidatus Nanopelagicales 0 order 12 7 2162846 3778 0 family 11 1 622681 2849 Candidatus Planktophila 0 genus 10 7 Candidatus Planktophila sulfonica 518 1884904 1 species 0 Candidatus Planktophila dulcis 296 1884914 1 0 species 1884907 Candidatus Planktophila vernalis 339 1 0 species 1 species 0 573600 Candidatus Planktophila limnetica 449 1884913 Candidatus Planktophila lacus 456 1 0 species species 0 1 781 Candidatus Planktophila versatilis 1884905 2039639 1 Candidatus Nanopelagicus 929 4 2 genus 0 1884916 Candidatus Nanopelagicus abundans 308 1 species 0 0 species 1 1884915 268 Candidatus Nanopelagicus hibericus 351 Candidatus Nanopelagicus limnes 1884634 species 0 1 4 1 order 0 622450 1 Actinopolysporales 696 3 2 0 family 622451 1 Actinopolysporaceae 695 0 genus 2 5 693 Actinopolyspora 1 1849 1 species 0 Actinopolyspora erythraea 688 414996 663 1643818 0 no rank 2 1 147067 663 Thermobispora genus 0 2 3 1 species 0 2006 Thermobispora bispora 660 4 6 order 0 Nakamurellales 1615 1643684 1 62 3 0 family 85031 1 Nakamurellaceae 1609 53460 1 Nakamurella 1547 34 2 genus 0 53461 1513 Nakamurella multipartita species 0 1 7 4 order 0 414714 1 Catenulisporales 2016 2009 Catenulisporaceae 1 414877 0 family 30 3 17 2 genus 0 414878 1 Catenulispora 1979 304895 1962 Catenulispora acidiphila 0 species 1 Streptomycetales 103930 85011 1 82 215 order 0 2062 1 Streptomycetaceae 103715 664 81 family 0 5 64 genus 0 2063 1 Kitasatospora 6541 no rank 0 1 2633591 1964 1964 Kitasatospora sp. MMS16-BH015 2018025 0 species 1 1078 Kitasatospora albolonga 68173 0 species 1 1 species 0 1894 Kitasatospora aureofaciens 1408 1 species 0 Kitasatospora setae 2027 2066 genus 0 75 3552 1 1883 96510 Streptomyces species 0 1 1228 Streptomyces alboflavus 67267 0 species 1 1915 1616 Streptomyces lincolnensis 1 species 0 Streptomyces pratensis 919 1169025 1 0 species Streptomyces lavendulae 990 1914 1244 Streptomyces clavuligerus 1901 0 species 1 1062 Streptomyces violaceoruber 1935 0 species 1 2049881 836 Streptomyces sp. XZHG99 0 species 1 species 0 1 1072 Streptomyces chartreusis 1969 33903 1102 Streptomyces avermitilis 0 species 1 1907 Streptomyces glaucescens 1018 1 species 0 species 0 1 1950 873 Streptomyces peucetius Streptomyces pristinaespiralis 961 38300 1 0 species species 0 1 1940 963 Streptomyces albireticuli 75293 Streptomyces autolyticus 1397 1 species 0 1 0 species Streptomyces albulus 1247 68570 1616117 Streptomyces formicae 810 1 0 species species 0 1 54571 1858 Streptomyces venezuelae 1 species 0 Streptomyces lividans 1262 1916 Streptomyces albus 2648 1888 1 species 0 0 species 1 553510 1135 Streptomyces gilvosporeus 918 Streptomyces niveus 193462 0 species 1 29303 Streptomyces cattleya 1436 1 0 species 2236 Streptomyces pactum 68249 0 species 1 0 species 1 68280 1459 Streptomyces violaceusniger 146923 1226 Streptomyces parvulus species 0 1 species 0 1 47763 3125 Streptomyces lydicus 1912 Streptomyces hygroscopicus 3124 1 0 species species 0 1 2149 Streptomyces bingchenggensis 379067 2375 629295 2 0 species group 1 0 species subgroup 1276 1482596 1276 Streptomyces griseus 1911 0 species 1 species subgroup 0 1 1099 1482558 1 species 0 1908 Streptomyces globisporus 1099 1355015 Streptomyces pluripotens 864 1 species 0 0 species 1 1237 Streptomyces malaysiensis 92644 1173 Streptomyces sp. S10(2016) 1783515 0 species 1 408015 Streptomyces xiamenensis 1064 1 species 0 1293 Streptomyces reticuli 1926 0 species 1 1 0 species 42684 Streptomyces collinus 1036 1642299 Streptomyces alfalfae 1297 1 species 0 species 0 1 1038928 1053 Streptomyces xinghaiensis species 0 1 778 Streptomyces fulvissimus 68202 1 0 species 164348 Streptomyces puniciscabiei 1351 1 species 0 Streptomyces leeuwenhoekii 1158 1437453 0 species 1 1000 Streptomyces rubrolavendulae 285473 24 0 no rank 27108 2593676 0 species 1 1649184 962 Streptomyces sp. CFMR 7 0 species 1 1174 Streptomyces sp. CCM_MD2014 1561022 1 species 0 1265601 Streptomyces sp. PAMC 26508 1026 1 0 species 1262452 Streptomyces sp. 769 1418 species 0 1 2135430 1570 Streptomyces sp. P3 Streptomyces sp. TN58 887 234612 1 0 species species 0 1 1961713 1181 Streptomyces sp. MOE7 Streptomyces sp. fd1-xmd 1018 1812480 1 species 0 species 0 1 1661694 937 Streptomyces sp. Tue 6075 2094021 922 Streptomyces sp. WAC00288 species 0 1 1841249 1320 Streptomyces sp. RTd22 species 0 1 1 0 species 444103 Streptomyces sp. CNQ-509 1260 1849967 Streptomyces sp. SAT1 1135 1 species 0 1 0 species 1984801 Streptomyces sp. CLI2509 939 species 0 1 938 Streptomyces sp. S8 1837283 1 0 species Streptomyces sp. SirexAA-E 769 862751 206662 Streptomyces sp. FR-008 1312 1 0 species 465541 996 Streptomyces sp. Mg1 species 0 1 1 0 species 1751294 Streptomyces sp. 4F 1012 1 species 0 1725411 Streptomyces sp. CdTB01 1419 1 species 0 Streptomyces sp. M56 1550 1495638 2059884 1301 Streptomyces sp. CMB-StM0423 species 0 1 0 species 1 1972846 1044 Streptomyces sp. Sge12 1 0 species Streptomyces sp. 3211 1018 1964449 1 0 species 362257 Streptomyces vietnamensis 1384 Streptomyces cyaneogriseus 1349 68192 1 species 0 1039 Streptomyces ambofaciens 1889 species 0 1 68214 Streptomyces griseochromogenes 1270 1 0 species 1930 1328 Streptomyces scabiei 0 species 1 1971 Streptomyces noursei 1036 1 species 0 2 species group 0 2851 1477431 1 species 0 Streptomyces coelicolor 1521 1902 1330 Streptomyces sampsonii 42239 0 species 1 1643682 1 Geodermatophilales 3167 8 7 0 order 38 7 family 0 85030 1 Geodermatophilaceae 3160 Blastococcus 716 38501 1 12 2 0 genus 1 0 species 138336 Blastococcus saxobsidens 704 2 9 0 genus 1860 1 Geodermatophilus 1143 1134 Geodermatophilus obscurus 1861 0 species 1 1 88138 1263 Modestobacter genus 0 20 2 1 species 0 Modestobacter marinus 1243 477641 6 19 0 order 2037 1 Actinomycetales 25432 2049 1 Actinomycetaceae 25426 7621 18 family 0 1 1653174 632 Actinotignum genus 0 2 2 59505 Actinotignum schaalii 630 1 species 0 2 435 genus 0 Mobiluncus 4247 2050 1 1 0 species Mobiluncus curtisii 3812 2051 Trueperella 1440 1069494 1 2 4 genus 0 1 species 0 Trueperella pyogenes 1436 1661 764 28263 1 0 genus 1 species 0 Arcanobacterium haemolyticum 764 28264 1 0 genus 2529408 1325 0 species 1 52773 1325 Actinomyces meyeri 1 1654 9397 Actinomyces 0 genus 9 142 Actinomyces oris 1805 544580 1 0 species 1953 Actinomyces pacaensis 1852377 species 0 1 Actinomyces gaoshouyii 926 1960083 1 0 species 2609248 3084 3 no rank 0 1299 Actinomyces sp. oral taxon 414 712122 0 species 1 species 0 1 736 Actinomyces sp. Chiba101 1851395 1049 Actinomyces sp. oral taxon 897 2081702 0 species 1 species 0 1 111015 1185 Actinomyces radicidentis Actinomyces sp. VUL4_3 302 1912795 1 0 species 174 1643683 1 order 0 85032 174 1 family 0 0 genus 1 174 28048 1 species 0 Acidothermus cellulolyticus 174 28049 0 class 1250 33 340186 Coriobacteriia 1 84998 1 1643822 66245 Eggerthellales 0 order 18 1155 family 0 17 18287 65090 Eggerthellaceae 1 1643826 Denitrobacterium 2303 79603 1 17 2 0 genus Denitrobacterium detoxificans 2286 79604 1 0 species 0 genus 12 2 1 84108 4837 Slackia Slackia heliotrinireducens 4825 84110 1 species 0 Eggerthella 20002 84111 1 3 67 genus 0 1 no rank 0 2648737 2819 2819 Eggerthella sp. YY7918 502558 species 0 1 84112 17116 Eggerthella lenta 0 species 1 1819 Phoenicibacter 1 1981050 genus 0 2 1 1944646 1818 Phoenicibacter massiliensis species 0 1 2 1 genus 0 447020 1 Adlercreutzia 5863 1 species 0 Adlercreutzia equolifaciens 5862 446660 1 644652 11360 Gordonibacter genus 0 3 61 5625 Gordonibacter massiliensis 1841863 species 0 1 1335613 5674 Gordonibacter urolithinfaciens species 0 1 1 84162 619 Cryptobacterium 0 genus 2 2 84163 617 Cryptobacterium curtum 0 species 1 84999 1 Coriobacteriales 272691 14 538 order 0 1 1643824 16278 Atopobiaceae family 0 346 7 genus 0 1 2 Atopobium 1380 133925 1 Olsenella 14412 4 86 genus 0 1 no rank 0 2638792 3272 Olsenella sp. oral taxon 807 3272 712411 1 species 0 Olsenella uli 4074 133926 1 0 species 6980 Olsenella sp. Marseille-P2300 1805478 species 0 1 2767353 1518 1 genus 0 1 0 species Atopobium parvulum 1518 1382 1205 6 family 0 Coriobacteriaceae 255875 84107 1 102106 1 Collinsella 249094 26 2 genus 0 74426 249068 Collinsella aerofaciens species 0 1 0 genus 2 3 1 33870 1968 Coriobacterium 33871 1965 Coriobacterium glomerans species 0 1 0 no rank 1 84113 3608 1531429 3608 Coriobacteriaceae bacterium 68-1-3 species 0 1 13475 200795 44 0 phylum class 0 12 11 3062 Chloroflexia 1 32061 3050 Chloroflexales 1 32064 order 0 10 7 1508595 1732 0 suborder 4 6 4 family 0 Roseiflexaceae 1732 1508635 1 120961 1 Roseiflexus 1726 11 3 0 genus 120962 Roseiflexus castenholzii 733 1 0 species 2609473 982 1 no rank 0 357808 982 Roseiflexus sp. RS-1 species 0 1 1311 1508594 5 suborder 0 Chloroflexaceae 1311 1106 1 5 2 family 0 genus 0 4 29 1 1107 1309 Chloroflexus 938 Chloroflexus aurantiacus 1 1108 0 species 468 2 1 0 strain Chloroflexus sp. Y-400-fl 470 480224 Chloroflexus aggregans 342 152260 1 species 0 3122 Anaerolineae 1 292625 class 0 5 7 Anaerolineales 3117 292629 1 6 7 0 order 3110 Anaerolineaceae 1 292628 family 0 5 1 Brevefilum 516 2019482 1 3 2 genus 0 513 Brevefilum fermentans 1986204 species 0 1 0 genus 1 894 233189 167964 Anaerolinea thermophila 894 1 0 species 1324991 1699 1 no rank 0 1889813 1699 Anaerolineaceae bacterium oral taxon 439 0 species 1 class 0 5 3 1 475962 1272 Caldilineae Caldilineales 1269 475963 1 31 4 order 0 1 475964 1238 Caldilineaceae family 0 1 3 7 2 0 genus 233191 1 Caldilinea 1237 species 0 1 1230 Caldilinea aerophila 133453 8 38 0 class 189775 1 Thermomicrobia 1300 4 subclass 0 979 85000 979 Sphaerobacterales 1 85001 order 0 20 4 959 255728 3 suborder 0 1 85002 959 Sphaerobacteraceae family 0 3 9 1 2056 950 Sphaerobacter 0 genus 38 2 1 0 species 2057 Sphaerobacter thermophilus 912 283 Thermomicrobiales 1 189776 order 0 1 3 282 189777 0 family 2 genus 0 2 1 1 499 282 Thermomicrobium 500 Thermomicrobium roseum 281 1 0 species 2063 Ardenticatenia 1 1382928 class 0 5 73 1990 Ardenticatenales 1 1382929 order 0 22 4 1382930 1 Ardenticatenaceae 1968 15 3 family 0 2 2 genus 0 1988031 1 Candidatus Promineofilum 1953 1 0 species 1806508 Candidatus Promineofilum breve 1951 class 0 8 32 1 301297 2656 Dehalococcoidia Dehalogenimonas 870 670486 1 27 3 0 genus 1 0 species Dehalogenimonas formicexedens 352 1839801 0 species 1 491 Dehalogenimonas lykanthroporepellens 552810 1754 1202465 0 order 4 1754 Dehalococcoidaceae 1 1202464 family 0 4 4 genus 0 2 3 1 61434 1750 Dehalococcoides species 0 1 1308 Dehalococcoides mccartyi 61435 no rank 0 1 237581 440 1522671 440 Dehalococcoides sp. UCH007 0 species 1 68080 1798711 clade 0 148 1 1117 68080 Cyanobacteria phylum 0 148 39 3 0 order 1890505 477 1 3 0 family 1890528 1 Chroococcidiopsidaceae 477 476 Chroococcidiopsis 1 54298 0 genus 13 2 1 species 0 Chroococcidiopsis thermalis 463 54299 64 33 0 order 1161 1 Nostocales 18270 9896 Nostocaceae 1 1162 family 0 17 23 0 genus 4 16 1 1163 2645 Anabaena 2619674 1794 2 no rank 0 Anabaena sp. 90 908 46234 1 species 0 1 species 0 Anabaena sp. WA102 886 1647413 species 0 1 835 Anabaena cylindrica 1165 264688 1144 genus 0 2 264691 592 Trichormus variabilis 0 species 1 1 0 species Trichormus azollae 552 1164 52 10 genus 0 1177 1 Nostoc 6084 7 no rank 0 4413 2593658 636 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 species 0 1 0 species 1 317936 623 Nostoc sp. PCC 7107 1 species 0 1869241 Nostoc sp. CENA543 734 Nostoc sp. NIES-3756 507 1751286 1 species 0 1261031 708 Nostoc sp. 'Peltigera membranacea cyanobiont N6' species 0 1 Nostoc sp. PCC 7120 533 103690 1 0 species Nostoc sp. PCC 7524 672 28072 1 species 0 Nostoc punctiforme 760 272131 1 0 species Nostoc flagelliforme 859 1306274 1 0 species 834 Hapalosiphonaceae 1 1892263 0 family 3 4 0 genus 2 11 830 Fischerella 1 1190 494603 819 0 no rank 1 1 0 species 1752063 Fischerella sp. NIES-3754 819 5377 2661849 0 family 8 8 15 0 genus Calothrix 5377 1186 1 0 no rank 6 4529 2619626 1015 Calothrix sp. NIES-4101 2005461 species 0 1 482 Calothrix sp. NIES-3974 2005462 species 0 1 species 0 1 547 Calothrix sp. 336/3 1337936 1 0 species Calothrix sp. NIES-4071 1330 2005469 1 species 0 1954171 Calothrix sp. NIES-2098 667 0 species 1 99598 488 Calothrix sp. PCC 7507 species 0 1 32054 833 Calothrix parietina 567 1219117 1 0 no rank 1940762 Nostocales cyanobacterium HT-58-2 567 1 0 species Rivulariaceae 1532 1185 1 3 9 0 family 22 2 genus 0 Rivularia 1523 373984 1 2676603 1501 1 no rank 0 373994 1501 Rivularia sp. PCC 7116 0 species 1 no rank 0 1 446 1983111 718217 446 cyanobacterium endosymbiont of Epithemia turgida species 0 1 1301283 18901 41 0 subclass 23 8 0 order Chroococcales 13224 1118 1 1890450 1 Aphanothecaceae 4688 1 10 0 family 2 1 0 genus Candidatus Atelocyanobacterium 689 1453359 1 688 Candidatus Atelocyanobacterium thalassa 713887 0 species 1 2 genus 0 2546365 1192 2 0 species 2546366 1192 626 Cyanothece sp. PCC 8801 41431 0 strain 1 0 strain 1 395962 566 Cyanothece sp. PCC 8802 573 92682 no rank 0 2 573 Halothece 1 76023 0 genus 1 2 1 no rank 0 2632878 572 1 0 species 65093 Halothece sp. PCC 7418 572 263510 747 genus 0 1 747 2546360 0 species 1 43989 747 Cyanothece sp. ATCC 51142 0 strain 1 2 0 genus 28070 1486 1 species 0 688 2546359 1 strain 0 497965 Cyanothece sp. PCC 7822 688 2546356 798 1 species 0 Cyanothece sp. PCC 7424 798 65393 1 strain 0 1 1890464 4026 Chroococcaceae family 0 6 17 1 genus 0 692 268175 1 0 no rank 692 2648896 2005460 692 Chondrocystis sp. NIES-4102 species 0 1 46 3 genus 0 Geminocystis 2831 669357 1 2 0 no rank 2785 2625037 1 species 0 Geminocystis sp. NIES-3709 1188 1617448 0 species 1 1615909 1597 Geminocystis sp. NIES-3708 486 102231 1 genus 0 486 2623012 1 0 no rank Gloeocapsa sp. PCC 7428 486 1173026 1 0 species 2438 Microcystaceae 1 1890449 0 family 15 4 1 1125 2423 Microcystis genus 0 3 16 1 no rank 0 854 2643300 species 0 1 854 Microcystis sp. MC19 1967666 1126 Microcystis aeruginosa 1553 1 species 0 0 family 2 2064 1890452 102234 1 Cyanobacterium 2064 1 2 0 genus Cyanobacterium aponinum 2063 379064 1 0 species 22 18 0 order Oscillatoriales 5677 1150 1 1 1892254 2134 Oscillatoriaceae family 0 5 5 genus 0 1 1155738 715 1155739 715 Moorea producens species 0 1 1 1158 1414 Oscillatoria genus 0 3 14 482564 Oscillatoria nigro-viridis 785 1 species 0 118323 615 Oscillatoria acuminata 0 species 1 839 Coleofasciculaceae 1 1892251 family 0 3 2 1 2 0 genus Geitlerinema 837 63132 1 1 no rank 0 836 2648775 1173025 836 Geitlerinema sp. PCC 7407 species 0 1 0 family 2 34 545 Gomontiellaceae 1 1892255 511 241421 1 0 genus species 0 1 511 Crinalium epipsammum 241425 4 3 family 0 Cyanothecaceae 527 1892249 1 43988 1 Cyanothece 523 64 2 0 genus no rank 0 1 459 2649277 1 species 0 Cyanothece sp. PCC 7425 459 395961 1 1892252 1610 Microcoleaceae 0 family 4 4 0 genus 2 2 1124 Trichodesmium 1 1205 0 species 1 1122 Trichodesmium erythraeum 1206 482 44471 1 0 genus 1 no rank 0 2642155 482 1 0 species 1173027 Microcoleus sp. PCC 7113 482 6 25 0 class Gloeobacteria 2001 307596 1 1 307595 1976 Gloeobacterales order 0 5 28 family 0 4 11 1 1890422 1948 Gloeobacteraceae 1937 Gloeobacter 1 33071 0 genus 3 15 1 species 0 Gloeobacter violaceus 1209 33072 species 0 1 713 Gloeobacter kilaueensis 1416614 1 1890424 25758 Synechococcales 0 order 230 56 71 6 0 family Leptolyngbyaceae 3028 1890438 1 Leptolyngbya 2957 47251 1 2 5 0 genus 1218 Leptolyngbya boryana 1184 0 species 1 3 0 no rank 1737 2650499 111781 Leptolyngbya sp. PCC 7376 417 1 0 species species 0 1 1080068 914 Leptolyngbya sp. O-77 1752064 406 Leptolyngbya sp. NIES-3755 species 0 1 2 family 0 1890429 412 2 1 0 genus 155977 1 Acaryochloris 412 411 Acaryochloris marina 155978 0 species 1 1890428 1354 0 family 4 genus 0 4 63 1 1142 1354 Synechocystis 1291 2640012 3 no rank 0 451 Synechocystis sp. IPPAS B-1465 2116702 0 species 1 451 Synechocystis sp. PCC 6803 1148 species 0 1 1147 Synechocystis sp. PCC 6714 389 1 species 0 600 2303730 family 0 2 2 3 0 genus 170610 1 Halomicronema 600 597 Halomicronema hongdechloris 1209493 0 species 1 0 family 1 3 1 1890436 386 Pseudanabaenaceae 2 43 genus 0 Pseudanabaena 385 1152 1 1 0 no rank 342 2593292 82654 Pseudanabaena sp. PCC 7367 342 1 species 0 1 1213 4767 Prochloraceae 0 family 5 9 0 genus 4 7 1 1218 4758 Prochlorococcus 3668 Prochlorococcus marinus 1219 0 species 1 2627481 1083 0 no rank 2 species 0 1 680 Prochlorococcus sp. MIT 0604 1501268 403 Prochlorococcus sp. MIT 0801 1501269 species 0 1 60 33 0 family Synechococcaceae 14981 1890426 1 146785 279 1 genus 0 146786 279 Thermosynechococcus elongatus species 0 1 Cyanobium 3307 167375 1 3 47 genus 0 1678 2627006 1 no rank 0 Cyanobium sp. NIES-981 1678 1851505 1 species 0 1 species 0 59930 Cyanobium gracile 1582 genus 0 26 214 10904 Synechococcus 1 1129 33070 Synechococcus lividus 301 1 species 0 0 no rank 23 2626047 9795 0 species 1 29410 561 Synechococcus sp. WH 8103 195498 269 Synechococcus sp. PCC 7117 species 0 1 0 species 1 324 Synechococcus sp. CC9311 64471 1916956 Synechococcus sp. SynAce01 697 1 0 species species 0 1 32049 231 Synechococcus sp. PCC 7002 1 0 species Synechococcus sp. PCC 8807 256 195248 species 0 1 321327 937 Synechococcus sp. JA-3-3Ab 1 species 0 Synechococcus sp. PCC 73109 206 374982 species 0 1 32051 454 Synechococcus sp. WH 7803 1 0 species 110662 Synechococcus sp. CC9605 567 585425 564 Synechococcus sp. KORDI-52 0 species 1 Synechococcus sp. NIES-970 249 1827144 1 0 species 1 0 species 316278 Synechococcus sp. RCC307 571 0 species 1 498 Synechococcus sp. KORDI-100 1280380 Synechococcus sp. PCC 7003 244 374981 1 0 species 1 species 0 Synechococcus sp. KORDI-49 441 585423 Synechococcus sp. PCC 6312 160 195253 1 0 species 0 species 1 316279 178 Synechococcus sp. CC9902 1350461 597 Synechococcus sp. UTEX 2973 species 0 1 0 species 1 1173263 428 Synechococcus sp. PCC 7502 84588 Synechococcus sp. WH 8102 561 1 species 0 1 0 species 321332 Synechococcus sp. JA-2-3B'a(2-13) 443 species 0 1 359 Synechococcus sp. WH 8109 166314 1 0 species 32046 Synechococcus elongatus 594 Dactylococcopsis 431 13034 1 2 1 genus 0 species 0 1 430 Dactylococcopsis salina 292566 2188 Pleurocapsales 1 52604 0 order 38 7 1538 Dermocarpellaceae 1 1890498 0 family 2 4 genus 0 3 10 1 102115 1536 Stanieria 2642663 792 no rank 0 1 0 species 1 792 Stanieria sp. NIES-3757 1807358 1 species 0 102116 Stanieria cyanosphaera 734 1 1890500 612 Hyellaceae 0 family 2 3 44474 609 0 genus 1 54308 Pleurocapsa minor 609 1 species 0 36 phylum 0 1297 25357 class 0 181 36 25357 Deinococci 1 188787 3 0 order 596 2762275 332247 1 Trueperaceae 596 3 9 0 family 2 7 genus 0 Truepera 587 332248 1 Truepera radiovictrix 580 332249 1 species 0 Thermales 8724 68933 1 120 17 0 order 1 188786 8604 Thermaceae family 0 57 16 208447 1 Oceanithermus 1515 14 2 0 genus 1 species 0 187137 Oceanithermus profundus 1501 8 229 0 genus 270 1 Thermus 4657 271 648 Thermus aquaticus species 0 1 0 species 1 774 Thermus oshimai 56957 Thermus scotoductus 569 37636 1 0 species species 0 1 56956 313 Thermus brockianus 0 species 1 1278 Thermus thermophilus 274 2619321 431 1 no rank 0 Thermus sp. CCB_US3_UF1 431 1111069 1 species 0 Thermus parvatiensis 415 456163 1 species 0 3 2 0 genus Marinithermus 664 186191 1 species 0 1 186192 661 Marinithermus hydrothermalis 65551 1 Meiothermus 1711 3 18 genus 0 Meiothermus ruber 924 277 1 0 species 52022 769 Meiothermus silvanus 0 species 1 15 181 order 0 Deinococcales 15856 118964 1 0 family 205 14 15675 Deinococcaceae 1 183710 genus 0 13 177 15470 Deinococcus 1 1298 1 0 species 1299 Deinococcus radiodurans 1543 718 Deinococcus deserti 310783 species 0 1 1182568 Deinococcus puniceus 962 1 0 species 1309411 1127 Deinococcus soli Cha et al. 2016 0 species 1 432329 746 Deinococcus peraridilitoris species 0 1 1768108 1403 Deinococcus actinosclerus 0 species 1 no rank 0 1 1167 2623546 2080419 1167 Deinococcus sp. NW-56 species 0 1 Deinococcus proteolyticus 1904 55148 1 species 0 Deinococcus gobiensis 1653 502394 1 species 0 species 0 1 1182571 1925 Deinococcus swuensis species 0 1 68909 1077 Deinococcus geothermalis 1068 Deinococcus maricopensis 309887 species 0 1 phylum 0 4 559 67819 0 class 4 1 559 Fimbriimonadia 1 1663419 order 0 3 1663425 558 0 family 5 3 1 1663426 558 Fimbriimonadaceae 11 2 genus 0 1005038 1 Fimbriimonas 553 Fimbriimonas ginsengisoli 542 1005039 1 0 species 1859062 667 no rank 0 2 2 26 genus 0 262406 1 Thermobaculum 667 166501 Thermobaculum terrenum 641 1 0 species 2 clade 0 2498710 398 67814 398 2 phylum 0 693071 398 class 0 2 order 0 2 398 693072 family 0 2 693073 398 0 genus 2 1 1 693074 398 Caldisericum 1 0 species 693075 Caldisericum exile 397 0 phylum 5 1498 200938 118001 1 Chrysiogenetes 1498 5 14 class 0 36 4 order 0 189769 1 Chrysiogenales 1484 1448 Chrysiogenaceae 1 189770 0 family 26 3 2 5 0 genus 393029 1 Desulfurispirillum 1422 936456 1417 Desulfurispirillum indicum 0 species 1 74152 2104 phylum 0 7 0 class 2 641853 562 1 2 0 order 641854 1 Elusimicrobiales 562 561 641876 family 0 1 0 genus 1 423604 561 1 0 species 423605 Elusimicrobium minutum 561 480 99260 0 no rank 1 480 uncultured Termite group 1 bacterium 167965 0 species 1 Endomicrobia 1062 447830 1 1 4 class 0 1061 1783344 3 order 0 1061 1783343 0 family 3 3 1 0 genus Endomicrobium 1061 1408194 1 1408281 Endomicrobium proavitum 555 1 species 0 1408204 Candidatus Endomicrobium trichonymphae 505 1 species 0