members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 24190266 31 44143 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15PseudopropionibacteriumCupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 4742 0 0 1 name 0 1 Bacteria 4439 2 24082687 176 superkingdom 1930617 1586 phylum 5 0 Calditrichae 5 1586 1962850 2 class 0 1 0 1 1584 1962852 7 order Calditrichales 4 3 Calditrichaceae family 2 1577 1962854 1 0 1 0 2 Caldithrix genus 2 187144 1575 0 Caldithrix abyssi 1 1573 187145 species 8 1446 200940 phylum 0 1 0 8 Thermodesulfobacteria class 3 67799 1446 7 Thermodesulfobacteriales 5 order 1443 188710 1 0 0 1 1438 188711 family 8 Thermodesulfobacteriaceae 6 Thermodesulfatator 2 449 241192 1 genus 0 1 0 448 171695 species Thermodesulfatator indicus 1 0 genus 444090 282 1 0 1653476 282 species Caldimicrobium thiodismutans 1 0 2 1740 699 genus species 1295609 443 1 Thermodesulfobacterium geofontis 0 256 1741 species Thermodesulfobacterium commune 1 0 phylum 1 57723 15238 21 Acidobacteria 1 0 1 0 17 Acidobacteriia 47 class 204432 14081 Acidobacteriales 12 11239 204433 order 80 0 1 0 1 Acidobacteriaceae 11 11159 204434 family 135 genus 10 392733 3721 3 Terriglobus 1 0 species 2081 392734 1 Terriglobus roseus 0 0 Terriglobus saanensis 1 870903 1630 species 0 1 2357 658061 17 genus Candidatus Koribacter 2 Candidatus Koribacter versatilis 1 658062 2340 species 0 2 Acidobacterium 2 genus 33973 1999 1 0 0 1997 33075 species Acidobacterium capsulatum 1 0 1 940557 2947 34 genus Granulicella 3 species 1377 940614 1 Granulicella mallensis 0 1536 940615 species Granulicella tundricola 1 0 116 order 2795 332160 4 Solibacterales 1 0 Solibacteraceae 3 2679 332161 family 24 0 1 1 0 5 genus 2655 332162 2 Candidatus Solibacter 0 1 Candidatus Solibacter usitatus species 332163 2650 1 0 class 7 1156 1562566 3 Blastocatellia 0 1 1149 458032 2 genus Chloracidobacterium 2 Chloracidobacterium thermophilum 1 458033 1147 species 0 0 26 200783 4882 phylum 1 0 26 Aquificae class 11 187857 4882 1485951 952 order 14 Desulfurobacteriales 4 0 1 3 Desulfurobacteriaceae family 50 938 558314 1 0 genus 472 171868 1 0 0 1 Thermovibrio ammonificans species 228745 472 1 64159 416 genus 0 0 1 Desulfurobacterium thermolithotrophum species 416 64160 1 0 21 Aquificales 1 order 32069 3919 2 no rank 90150 450 0 genus 3 450 412592 2 Thermosulfidibacter 1 0 Thermosulfidibacter takaii 1 447 412593 species 0 13 Aquificaceae family 1 2237 64898 1 0 2 Aquifex 3 genus 223 2713 1 0 species 63363 220 1 Aquifex aeolicus 0 1 genus 939 150 0 150 940 species Hydrogenobacter thermophilus 1 0 1 0 3 Thermocrinis 3 genus 75905 329 0 Thermocrinis albus 1 136094 157 species 169 75906 species Thermocrinis ruber 1 0 97 genus 1534 168657 6 Hydrogenobaculum 1 0 5 2622382 1437 no rank 0 1 Hydrogenobaculum sp. 3684 species 309 547143 0 0 Hydrogenobaculum sp. SN 1 309 547146 species 0 1 Hydrogenobaculum sp. SHO species 309 547145 0 1 Hydrogenobaculum sp. Y04AAS1 species 380749 201 Hydrogenobaculum sp. HO 1 309 547144 species 0 0 5 224027 1231 family 1 0 3 Sulfurihydrogenibium 3 genus 212790 809 1 no rank 472 2619248 0 0 436114 472 species Sulfurihydrogenibium sp. YO3AOP1 1 0 309806 334 species Sulfurihydrogenibium azorense 1 2 Persephonella genus 1 422 182899 1 0 1 Persephonella marina species 309805 421 0 0 4 clade 260 2498710 4 phylum 260 67814 0 0 1 693071 260 class 5 Caldisericia 4 3 order 255 693072 0 3 Caldisericaceae 1 family 693073 255 1 0 0 1 Caldisericum 2 254 693074 genus 10 0 1 Caldisericum exile species 693075 244 2138240 244 phylum 1 0 0 1 2138243 244 class 0 1 order 244 2138246 family 244 2138247 1 0 0 genus 68335 244 1 0 1 Coprothermobacter proteolyticus species 244 35786 0 522 2323 no rank 2 0 2 1783234 522 clade 1 95901 325 clade 0 0 1 class 325 2497643 325 2497644 order 1 0 1 2497645 325 family 0 genus 1551504 325 1 0 species 325 673862 1 Candidatus Babela massiliensis 0 phylum 95818 197 1 0 0 1 1895827 197 no rank Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 1 2056494 197 species 0 57 74001 203691 phylum 0 1 0 57 Spirochaetia 104 class 74001 203692 0 8 4075 1643688 order 0 1 Leptospiraceae 8 4075 170 family 9 3334 171 genus 18 Leptospira 6 0 1 1 Leptospira biflexa species 172 487 0 Leptospira interrogans 1 1138 173 species 0 1 Leptospira alstonii species 679 28452 0 562 174 species Leptospira borgpetersenii 1 0 Leptospira santarosai 1 28183 450 species 0 genus 732 338321 1 0 0 species 732 29510 1 Turneriella parva 0 1 Spirochaetales 41 63179 136 order 2433 57645 137 529 family Spirochaetaceae 23 0 1 0 1 genus 1616789 1466 1466 1307761 species Salinispira pacifica 1 0 Spirochaeta 3 4292 146 18 genus 0 1 0 species 154 2681 1 Spirochaeta thermophila 0 46355 1593 species Spirochaeta africana 1 0 1 44932 157 1380 genus Treponema 12 1 no rank 3408 2638727 0 species 3408 1539298 1 Treponema sp. OMZ 838 0 species 53435 156 1 Treponema paraluiscuniculi 0 0 Treponema primitia 1 1838 88058 species 1 Treponema caldarium species 1392 215591 0 species 1618 150829 1 Treponema azotonutricium 0 0 Treponema denticola 1 158 1979 species 0 1 Treponema succinifaciens species 24926 167 species 2616 81028 1 Treponema brennaborense 0 0 species 221027 4840 1 Treponema putidum species 409322 618 1 Treponema pedis 0 0 species 161 160 1 Treponema pallidum 4 Sphaerochaeta genus 9 399320 4902 1 0 Sphaerochaeta coccoides 1 273376 1292 species 0 2122 1131703 species Sphaerochaeta globosa 1 0 1 Sphaerochaeta pleomorpha species 1131707 1479 0 genus 4 1911556 1524 2 Sediminispirochaeta 1 0 0 species 55206 1520 1 Sediminispirochaeta smaragdinae 1643685 3101 1 family Borreliaceae 17 0 1 0 1 138 1646 genus 10 Borrelia 8 1 Borrelia turicatae species 200 142 0 1 Borrelia hermsii species 180 140 0 species 143 168 1 Borrelia anserina 0 0 40834 232 species Borrelia duttonii 1 0 208 44449 species Borrelia recurrentis 1 Borrelia parkeri 1 141 201 species 0 0 species 47466 447 1 Borrelia miyamotoi 1 0 8 Borreliella genus 41 64895 1454 0 Borreliella garinii 1 29519 375 species Borreliella burgdorferi 1 219 139 species 0 1 Borreliella bissettii species 64897 78 0 1 Borrelia mayonii species 291 1674146 0 1 Borreliella afzelii species 29518 159 0 0 species 154 62088 1 Borreliella valaisiana 0 1 Borreliella bavariensis species 664662 137 1 0 order 3 1643686 6643 7 Brachyspirales 1 0 6 Brachyspiraceae 100 family 143786 6640 5 Brachyspira genus 93 29521 6540 1 0 941 84378 species Brachyspira murdochii 1 0 0 species 1437 159 1 Brachyspira hyodysenteriae species 52584 2936 1 Brachyspira pilosicoli 0 0 species 84377 1133 1 Brachyspira intermedia 0 200918 13557 phylum 42 0 1 13557 188708 12 class Thermotogae 42 0 1 2486 1643947 1 order Petrotogales 6 0 5 family 2485 1643949 160798 1739 8 genus Marinitoga 3 0 1 0 1 no rank 2640159 863 0 Marinitoga sp. 1137 1 1545835 863 species 0 species 868 149715 1 Marinitoga piezophila 0 1 407 1511648 genus 1006576 407 species Defluviitoga tunisiensis 1 0 1 339 28236 genus 0 0 1 Petrotoga mobilis species 339 69499 28 Thermotogales 6 order 2419 9932 1 0 50 family 3174 1643950 10 Fervidobacteriaceae 1 0 1 0 5 Thermosipho 4 genus 1842 2420 2 2676525 808 no rank 0 0 Thermosipho sp. 1070 1 1437364 407 species 1 Thermosipho sp. 1063 species 1462747 401 0 1 Thermosipho melanesiensis species 46541 496 0 0 534 2421 species Thermosipho africanus 1 2422 1282 genus 1 Fervidobacterium 4 0 1 0 Fervidobacterium islandicum 1 247 2423 species 1 Fervidobacterium nodosum species 354 2424 0 1 Fervidobacterium pennivorans species 93466 680 0 12 family 6752 188709 17 Thermotogaceae 1 0 0 1 2335 4852 genus 123 Thermotoga 11 1 Thermotoga naphthophila species 93930 518 0 species 602 1508419 1 Thermotoga caldifontis 0 0 93929 442 species Thermotoga petrophila 1 2337 505 species Thermotoga neapolitana 1 0 species 2336 454 1 Thermotoga maritima 0 1508420 494 species Thermotoga profunda 1 0 0 4 2631113 1714 no rank species 393 1157947 1 Thermotoga sp. Cell2 0 0 Thermotoga sp. RQ2 1 421 126740 species species 1157948 372 1 Thermotoga sp. 2812B 0 0 1 Thermotoga sp. RQ7 species 126738 528 5 Pseudothermotoga 83 genus 1643951 1888 1 0 0 1 Pseudothermotoga hypogea species 599 57487 0 38322 402 species Pseudothermotoga elfii 1 1 Pseudothermotoga thermarum species 119394 398 0 species 177758 406 1 Pseudothermotoga lettingae 0 7 Kosmotogales 3 order 1643946 1127 1 0 7 family 1124 1643948 6 Kosmotogaceae 1 0 405 1184396 genus 1 Mesotoga 2 0 1 species 1184387 404 1 Mesotoga prima 0 1 genus 712 651456 3 Kosmotoga 1 0 0 Kosmotoga olearia 1 300 651457 species Kosmotoga pacifica 1 411 1330330 species 0 0 10 200930 2930 phylum 7 class 2930 68337 10 Deferribacteres 1 0 0 1 Deferribacterales 9 191393 2923 order 30 8 Deferribacteraceae 33 family 191394 2893 1 0 0 533 545865 genus 1 533 477976 species Calditerrivibrio nitroreducens 1 0 Flexistipes 2 2351 665 genus 4 0 1 661 2352 species Flexistipes sinusarabici 1 0 Denitrovibrio 2 117999 877 8 genus 0 1 species 869 118000 1 Denitrovibrio acetiphilus 0 785 53572 genus 3 Deferribacter 2 0 1 782 197162 species Deferribacter desulfuricans 1 0 0 8597844 1783270 clade 373 phylum 142182 5615 8 0 8 Gemmatimonadetes class 18 5615 219685 1 0 0 1 Gemmatimonadales 7 219686 5597 84 order 0 1 219687 5513 60 family Gemmatimonadaceae 6 genus 18 2482 1706036 2 Gemmatirosa 1 0 0 2464 861299 species Gemmatirosa kalamazoonesis 1 0 1 Gemmatimonas 3 2971 173479 genus 141 1 Gemmatimonas phototrophica species 1379270 1199 0 Gemmatimonas aurantiaca 1 173480 1631 species 0 1 phylum 456828 468 0 1 456826 468 genus 0 species 456827 468 1 Candidatus Cloacimonas acidaminovorans 0 0 8589193 68336 clade 360 0 18992 1090 phylum 22 191410 18992 73 class Chlorobia 22 0 1 18919 191411 199 order Chlorobiales 21 0 1 family 35 191412 18720 20 Chlorobiaceae 1 0 0 1 Chloroherpeton 2 100715 892 genus 9 0 1 Chloroherpeton thalassium species 100716 883 0 no rank 6891 274493 8 1 0 5 Chlorobium 5 genus 1091 4340 0 1 Chlorobium limicola species 1535 1092 Chlorobium chlorochromatii 1 481 337090 species 0 0 Chlorobium phaeovibrioides 1 1094 912 species species 1096 1407 1 Chlorobium phaeobacteroides 0 0 1 1099 2551 genus 20 Pelodictyon 3 0 34090 939 species Pelodictyon phaeoclathratiforme 1 Pelodictyon luteolum 1 1592 1100 species 0 0 1 Chlorobaculum 4 256319 7375 genus 45 species 2616 274537 1 Chlorobaculum limnaeum 0 0 species 2736 274539 1 Chlorobaculum parvum 0 Chlorobaculum tepidum 1 1978 1097 species Prosthecochloris 5 1101 3527 9 genus 0 1 3 2632826 2602 no rank 0 0 Prosthecochloris sp. HL-130-GSB 1 1974213 820 species 1 Prosthecochloris sp. CIB 2401 species 1868325 703 0 0 Prosthecochloris sp. GSB1 1 1079 281093 species 0 1 Prosthecochloris aestuarii species 916 1102 331 Bacteroidetes phylum 40 976 8568538 1 0 11 class 14536 1853228 16 Chitinophagia 1 0 14525 1853229 21 order Chitinophagales 15 0 1 Chitinophagaceae 14 14504 563835 family 57 0 1 3 Niabella 4 genus 3070 379899 1 0 1571 1176587 species Niabella ginsenosidivorans 1 0 1 Niabella soli species 446683 1495 0 0 1 1769012 960 2 genus Arachidicoccus 2 1 958 2636138 no rank 0 958 1850526 species Arachidicoccus sp. BS20 1 0 649460 2646 1 genus Filimonas 2 0 1 1 Filimonas lacunae species 2645 477680 0 0 354354 2247 genus 1 Niastella koreensis 1 354356 2247 species 0 1 0 genus 3 79328 4442 3 Chitinophaga 0 2029983 1443 species Chitinophagaceae bacterium 13 1 2996 79329 species Chitinophaga pinensis 1 0 2 Flavisolibacter 1 genus 398041 1082 1 0 0 species 1492898 1081 1 Flavisolibacter tropicus 0 1 24571 117747 19 class Sphingobacteriia 24 17 order 200666 24552 23 Sphingobacteriales 1 0 Sphingobacteriaceae 22 84566 24535 family 50 0 1 0 1 Pseudopedobacter 2 1712 1649482 1 genus 0 1711 151895 species Pseudopedobacter saltans 1 genus 12 8039 84567 6 Pedobacter 1 0 0 species 430522 1771 1 Pedobacter steynii Pedobacter heparinus 1 1633 984 species 0 1 Pedobacter ginsengisoli species 1298 363852 0 1 Pedobacter cryoconitis species 188932 1477 0 0 1 no rank 2628915 1848 species 1727164 1848 1 Pedobacter sp. PACM 27299 0 0 1 Solitalea 2 929509 1669 5 genus species 995 1664 1 Solitalea canadensis 0 0 1 7123 28453 51 genus Sphingobacterium 6 0 5790 2609468 no rank 4 0 species 1459 743722 1 Sphingobacterium sp. 21 0 species 2003121 1772 1 Sphingobacterium sp. G1-14 0 Sphingobacterium sp. B29 1 1933220 1528 species 0 Sphingobacterium sp. ML3W 1 1538644 1031 species 1282 1010 species Sphingobacterium mizutaii 1 0 no rank 1621 84568 1 0 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 1 1986952 1621 species 0 0 1 Mucilaginibacter 4 423349 4321 42 genus 1 2617802 1487 no rank 0 species 1487 1300914 1 Mucilaginibacter sp. PAMC 26640 0 Mucilaginibacter sp. BJC16-A31 1 1234841 1064 species 0 species 1550579 1728 1 Mucilaginibacter gotjawali 0 class 11 1937959 3717 7 Saprospiria 1 0 Saprospirales 6 1936988 3706 order 16 0 1 0 913 89374 family 2 0 1 Saprospira 2 1007 913 genus 5 0 1 Saprospira grandis species 908 1008 0 1 Haliscomenobacteraceae 3 2777 1937961 9 family 6 genus 2349 2768 2 Haliscomenobacter 1 0 2762 2350 species Haliscomenobacter hydrossis 1 0 0 1 1100069 8944 order 177 Bacteroidetes Order II. Incertae sedis 7 6 Rhodothermaceae family 100 8767 563843 1 0 Rhodothermus 2 4035 29548 genus 12 0 1 4023 29549 species Rhodothermus marinus 1 0 1500 146918 genus 11 Salinibacter 2 0 1 species 1489 146919 1 Salinibacter ruber 0 1196022 3132 no rank 1 0 0 species 3132 1779382 1 Rhodothermaceae bacterium RA 1 0 56 Cytophagia class 134 71311 768503 0 1 Cytophagales 55 71177 768507 321 order 0 2 family 2762301 774 0 1 Marivirga 2 774 869806 8 genus species 1006 766 1 Marivirga tractuosa 0 0 1 1501348 565 1 family Amoebophilaceae 3 1 273135 277 genus 0 0 2641185 277 no rank 1 1 Cardinium endosymbiont of Encarsia pergandiella species 249402 277 0 1 genus 287 281119 0 0 species 281120 287 1 Candidatus Amoebophilus asiaticus 1 0 15 Cytophagaceae family 80 89373 17438 6 Spirosoma genus 19 107 8548 1 0 1 Spirosoma sp. HA7 species 1868 2057025 0 0 1211326 1376 species Spirosoma aerolatum 1 0 species 564064 1597 1 Spirosoma rigui 1178516 2269 species Spirosoma montaniterrae 1 0 1419 1379870 species Spirosoma radiotolerans 1 0 0 105 2032 genus 1 0 1 Runella slithyformis species 106 2032 0 genus 120831 2860 1 0 species 94254 2860 1 Dyadobacter fermentans 2 Leadbetterella genus 4 319458 1139 1 0 0 1 Leadbetterella byssophila species 1135 316068 0 1 861914 1603 genus 1 Fibrella 2 0 no rank 2620963 1602 1 0 Fibrella sp. ES10-3-2-2 1 1834519 1602 species 2 Cytophaga genus 1 1176 978 1 0 1175 985 species Cytophaga hutchinsonii 1 0 1 family 962 1937968 2 Bernardetiaceae 1 0 0 1 961 1937972 genus species 961 999 1 Bernardetia litoralis 0 1 0 16 Hymenobacteraceae family 83 39876 1853232 232 genus 29054 89966 8 Hymenobacter 1 0 0 species 1411621 4473 1 Hymenobacter sedentarius 0 1 Hymenobacter swuensis species 4220 1446467 5 no rank 20129 2615202 0 1 Hymenobacter sp. PAMC 26554 species 4236 1484116 0 0 1 Hymenobacter sp. PAMC 26628 species 1484118 4790 0 species 3287 1385664 1 Hymenobacter sp. DG25B 0 species 1385663 3165 1 Hymenobacter sp. DG25A 4651 1356852 species Hymenobacter sp. APR13 1 0 0 1 1379908 5963 genus 18 Rufibacter 4 0 Rufibacter tibetensis 1 512763 2407 species 2 3538 2639626 no rank 0 species 1651 1379910 1 Rufibacter sp. DG31D 0 1 Rufibacter sp. DG15C species 1887 1379909 0 11 genus 323449 4776 3 Pontibacter 1 0 species 2092 400092 1 Pontibacter korlensis 0 species 2673 388950 1 Pontibacter akesuensis 0 family 8 563798 5181 9 Cyclobacteriaceae 1 0 0 1 Belliella 2 667 232244 2 genus 1 Belliella baltica species 665 232259 0 0 1 Echinicola 2 1528 390846 1 genus 1 Echinicola vietnamensis species 390884 1527 0 0 1 Cyclobacterium 3 1965 68288 genus 8 species 880 104 1 Cyclobacterium marinum 0 Cyclobacterium amurskyense 1 320787 1077 species 0 1 1013 246875 genus 0 species 1727163 1013 1 Algoriphagus sp. M8-2 0 0 1 1637 1853234 family 1 Persicobacteraceae 3 2 Persicobacter 4 genus 1636 59740 1 0 1 no rank 1632 2664020 0 Persicobacter sp. JZB09 1 1632 1085624 species 0 0 1 Flammeovirgaceae 4 200667 4423 family 8 0 no rank 340671 2768 1 2768 1257021 species Flammeovirgaceae bacterium 311 1 0 2 genus 1647 59739 2 Flammeovirga 1 0 0 1645 2637820 no rank 1 0 1645 1191459 species Flammeovirga sp. MY04 1 0 1 8308713 200643 class 116 Bacteroidia 73 1722 order 8301357 171549 61 Bacteroidales 1 0 Barnesiellaceae 3 2005519 141241 16 family 0 1 0 1 141225 397864 genus 40 Barnesiella 2 141185 397865 species Barnesiella viscericola 1 0 1 0 3 Odoribacteraceae family 2 138186 1853231 1 0 genus 5 283168 138184 2 Odoribacter 0 1 Odoribacter splanchnicus species 28118 138179 0 1 Tannerellaceae 7 2005525 1494686 family 68 0 1 375288 1429851 genus 162 Parabacteroides 3 1 Parabacteroides distasonis species 585059 823 0 0 2649774 844630 no rank 1 Parabacteroides sp. CT06 1 2025876 844630 species 0 64767 195950 genus 25 Tannerella 3 0 1 0 no rank 2620507 12230 1 712710 12230 species Tannerella sp. oral taxon HOT-286 1 0 0 28112 52512 species Tannerella forsythia 1 384267 171550 family 39 Rikenellaceae 5 0 1 2 Alistipes genus 60 239759 381450 1 0 0 381390 214856 species Alistipes finegoldii 1 0 1 1611681 2778 6 genus Mucinivorans 2 species 1433126 2772 1 Mucinivorans hirudinis 0 0 no rank 662380 333046 5 1 0 genus 4 511434 1040 2 Candidatus Azobacteroides 0 species 511435 1036 1 Candidatus Azobacteroides pseudotrichonymphae genus 909656 661340 3 0 species 357276 469638 1 Bacteroides dorei 0 0 Bacteroides vulgatus 1 130215 821 species 0 species 376805 61487 1 Bacteroides salanitronis 185291 1690 no rank 1 0 species 1690 1400053 1 Bacteroidales bacterium CF 0 0 1 2005520 38839 1 family Dysgonamonadaceae 7 28737 294702 28 genus Proteiniphilum 2 0 1 1 Proteiniphilum saccharofermentans species 28709 1642647 0 0 1 Petrimonas 2 307628 6610 genus 15 0 Petrimonas mucosa 1 1642646 6595 species genus 7 3491 1784836 2 Fermentimonas 1 0 0 Fermentimonas caenicola 1 1562970 3484 species 11 Bacteroidaceae family 90 815 5154544 1 0 5154454 816 73575 genus Bacteroides 10 0 1 0 220353 28119 species Bacteroides zoogleoformans 1 species 246787 717248 1 Bacteroides cellulosilyticus 0 0 species 818 593927 1 Bacteroides thetaiotaomicron 0 1 Bacteroides helcogenes species 280796 290053 0 Bacteroides fragilis 1 817 1927251 species species 47678 83219 1 Bacteroides caccae 0 747102 28116 species Bacteroides ovatus 1 0 Bacteroides heparinolyticus 1 228909 28113 species 0 species 1796613 282074 1 Bacteroides caecimuris 0 Porphyromonadaceae 4 171551 13045 family 42 0 1 1 0 3 Porphyromonas 15 genus 836 13003 0 1 Porphyromonas gingivalis species 837 10725 Porphyromonas asaccharolytica 1 28123 2263 species 0 1 0 3 Paludibacteraceae 2 family 2005523 3307 2 Paludibacter genus 6 3305 346096 1 0 1 Paludibacter propionicigenes species 3299 185300 0 11 Prevotellaceae family 94 267450 171552 1 0 838 267356 221 genus Prevotella 10 0 1 839 8793 species Prevotella ruminicola 1 0 0 52227 23696 species Prevotella dentalis 1 0 1 no rank 2638335 1947 0 species 652716 1947 1 Prevotella sp. oral taxon 299 0 4451 28132 species Prevotella melaninogenica 1 0 1 Prevotella jejuni species 1177574 3990 0 Prevotella enoeca 1 3075 76123 species species 5090 589436 1 Prevotella fusca 0 species 28131 209232 1 Prevotella intermedia 0 0 species 28129 6861 1 Prevotella denticola 0 1 7240 1970189 4 order Marinilabiliales 11 2 Salinivirgaceae 5 family 1970190 837 1 0 1 genus 1970191 832 0 species 1307839 832 1 Salinivirga cyanobacteriivorans 0 1 0 4 family 1573805 1377 2 Marinifilaceae genus 1373 2060722 1 0 Marinifilaceae bacterium SPP2 1 1373 1717717 species 0 0 1 Prolixibacteraceae 3 3782 1471398 11 family 1471399 3771 genus 1 Draconibacterium 2 0 1 species 1168034 3770 1 Draconibacterium orientale 0 3 Marinilabiliaceae family 3 1240 558415 1 0 1 0 2 Alkalitalea genus 1 1193324 1237 0 species 1236 889453 1 Alkalitalea saponilacus 1 0 147 Flavobacteriia 87 class 136706 117743 1 0 146 Flavobacteriales 88 order 200644 136619 3 no rank 249 313602 0 1 0 genus 3 177 336809 2 Candidatus Sulcia species 174 336810 1 Candidatus Sulcia muelleri 0 0 1940138 72 genus 1 0 Candidatus Walczuchella monophlebidarum 1 1415657 72 species 0 1 Ichthyobacteriaceae 2 177 1755828 family 1 genus 176 1755829 1 0 species 242600 176 1 Ichthyobacterium seriolicida 0 0 1 Flavobacteriaceae 105 80504 49546 1368 family 0 1 Capnocytophaga 15 1016 20580 46 genus 0 1 Capnocytophaga sputigena species 1019 1307 0 Capnocytophaga canimorsus 1 28188 1288 species 0 Capnocytophaga cynodegmi 1 525 28189 species 1848904 891 species Capnocytophaga stomatis 1 0 327575 4500 species Capnocytophaga leadbetteri 1 0 6 2640652 8772 no rank 0 species 1316593 1271 1 Capnocytophaga sp. oral taxon 864 0 0 Capnocytophaga sp. oral taxon 323 1 1705617 1342 species 1 Capnocytophaga sp. oral taxon 878 species 1316596 3689 0 0 209053 1039 species Capnocytophaga sp. ChDC OS43 1 0 species 1945658 706 1 Capnocytophaga sp. H4358 Capnocytophaga sp. H2931 1 725 1945657 species 0 0 1 Capnocytophaga haemolytica species 45243 1051 Capnocytophaga ochracea 1 1126 1018 species 0 1 Capnocytophaga gingivalis species 1074 1017 0 genus 2700084 935 1 0 1 Lutibacter sp. LPB0138 species 935 1850246 0 1 0 2 Robiginitalea genus 1 1647 252306 species 1646 252307 1 Robiginitalea biformata 0 Gramella 5 3861 292691 genus 8 0 1 species 1251 1486245 1 Gramella flava 0 1 Gramella sp. SH35 species 2126553 1188 0 0 species 681 1913577 1 Gramella sp. LPB0144 0 1 Gramella forsetii species 733 411153 0 1 genus 443 1176327 1 443 2636237 no rank 0 0 Aureitalea sp. RR4-38 1 2094025 443 species 1 0 genus 27 8807 237 9 Flavobacterium 1492737 1248 species Flavobacterium gilvum 1 0 0 602 96345 species Flavobacterium psychrophilum 1 1 Flavobacterium branchiophilum species 531 55197 0 0 species 506 1763534 1 Flavobacterium crassostreae species 1306519 917 1 Flavobacterium commune 0 Flavobacterium indicum 1 681 312277 species 0 species 1551 996 1 Flavobacterium columnare 0 species 986 2744 1 Flavobacterium johnsoniae 0 0 genus 2354 111500 2 1 Muricauda lutaonensis species 516051 979 0 Muricauda ruestringensis 1 1375 111501 species 0 genus 2 525 358023 2 Lutibacter 1 0 523 1622118 species Lutibacter profundi 1 0 1 0 5 Tenacibaculum 15 genus 2440 104267 1 Tenacibaculum dicentrarchi species 669041 503 0 1850252 528 species Tenacibaculum todarodis 1 0 0 1 Tenacibaculum maritimum species 107401 638 0 1 Tenacibaculum jejuense species 584609 756 0 1 291183 1615 genus 4 Lacinutrix 4 0 species 568 1486034 1 Lacinutrix venerupis 0 no rank 1043 2647285 2 Lacinutrix sp. Bg11-31 1 2057808 535 species 0 species 508 983544 1 Lacinutrix sp. 5H-3-7-4 0 0 genus 641 225842 2 no rank 641 2644710 2 0 1 Formosa sp. Hel3_A1_48 species 259 1336795 0 0 Formosa sp. Hel1_33_131 1 382 1336794 species 1 0 1 genus 2214 104264 4 Cellulophaga 1 Cellulophaga lytica species 566 979 0 Cellulophaga baltica 1 1000 76594 species 0 0 species 59600 647 1 Cellulophaga algicola 524 389486 genus 1 0 0 2648869 524 no rank 1 1 Sediminicola sp. YIK13 species 524 1453352 0 5 Myroides 57 genus 7835 76831 1 0 0 Myroides profundi 1 480520 627 species 0 1 Myroides odoratimimus species 5479 76832 0 no rank 1672 2642485 2 species 886 1583100 1 Myroides sp. A21 0 species 1458492 786 1 Myroides sp. ZB35 0 0 1 Polaribacter 6 52959 3963 genus 7 no rank 1827 196858 3 0 313598 682 species Polaribacter sp. MED152 1 0 1529069 525 species Polaribacter sp. BM10 1 0 0 1 Polaribacter sp. ALD11 species 620 2058137 0 Polaribacter reichenbachii 1 996801 1171 species 0 958 1774273 species Polaribacter vadi 1 4 Dokdonia 15 genus 1304 326319 1 0 2615033 895 no rank 2 0 0 265 313590 species Dokdonia sp. MED134 1 0 Dokdonia sp. 4H-3-7-5 1 983548 630 species 0 1 Dokdonia donghaensis species 394 326320 genus 3 1164 286104 3 Winogradskyella 1 0 1161 2615021 no rank 2 0 0 species 754409 569 1 Winogradskyella sp. PG-2 species 592 1936080 1 Winogradskyella sp. J14-2 0 0 1209327 784 genus 1 1 Flavivirga eckloniae species 1803846 784 0 1 686 1518147 genus 0 1790137 686 species Wenyingzhuangia fucanilytica 1 0 0 1 112040 1088 genus 0 1 Zobellia galactanivorans species 1088 63186 0 genus 480 83612 1 0 species 480 57029 1 Psychroflexus torquis 0 1 Aequorivita 2 679 153265 genus 7 0 1 Aequorivita sublithincola species 672 101385 1 0 genus 1 631 261827 2 Algibacter Algibacter alginicilyticus 1 630 1736674 species 0 1 0 genus 3 393005 592 2 Tamlana 0 Tamlana sp. UJ94 1 589 2069432 species 0 1 2635 363408 2 genus Nonlabens 5 0 1 Nonlabens dokdonensis species 753 328515 Nonlabens sediminis 1 552 319236 species 0 no rank 1328 2615035 2 0 0 671 2058134 species Nonlabens sp. MB-3u-79 1 1 Nonlabens sp. MIC269 species 657 1476901 0 1 0 2 Olleya 6 genus 336276 497 0 no rank 2615019 491 1 Olleya sp. Bg11-27 1 2058135 491 species 0 0 1 Zunongwangia 2 417127 1215 4 genus Zunongwangia profunda 1 398743 1211 species 0 0 4 genus 252356 2902 0 species 1178778 894 1 Maribacter cobaltidurans 3 2008 2615042 no rank 0 0 species 526 313603 1 Maribacter sp. HTCC2170 Maribacter sp. 1_2014MBL_MicDiv 1 1644130 797 species 0 1 Maribacter sp. T28 species 1836467 685 0 0 genus 514 1204360 1 species 514 762954 1 Siansivirga zeaxanthinifaciens 0 2 Croceibacter genus 1 532 216431 1 0 Croceibacter atlanticus 1 531 313588 species 0 1 genus 923 143222 2 Salegentibacter 1 0 0 922 2633436 no rank 1 0 1 Salegentibacter sp. T436 species 1729720 922 0 no rank 2274 61432 2 0 1 Flavobacteriaceae bacterium 3519-10 species 1322 531844 0 Flavobacteriaceae bacterium UJ101 1 952 1150389 species 634 1649495 genus 1 0 0 no rank 2622645 634 1 634 1936081 species Seonamhaeicola sp. S2-3 1 0 Arenibacter 2 178469 1218 genus 1 0 1 0 616991 1217 species Arenibacter algicola 1 0 family 1104 1333713 2 0 1 1104 267986 6 genus Owenweeksia 2 1 Owenweeksia hongkongensis species 1098 253245 0 9 family 1358 39782 0 1 0 genus 18 34098 1358 9 Blattabacterium species 1653831 161 1 Blattabacterium cuenoti 0 0 no rank 1000 2647581 6 Blattabacterium sp. (Blaberus giganteus) 1 124 1186051 species 0 species 367806 155 1 Blattabacterium sp. (Blatta orientalis) 0 Blattabacterium sp. (Periplaneta americana) 1 367488 202 species 0 0 species 624186 293 1 Blattabacterium sp. (Blattella germanica) species 116 1316444 1 Blattabacterium sp. (Nauphoeta cinerea) 0 species 39768 110 1 Blattabacterium sp. (Mastotermes darwiniensis) 0 0 species 164514 179 1 Blattabacterium punctulatus 1 0 family 1 808 1853230 3 Crocinitomicaceae genus 5 807 332102 2 Fluviicola 1 0 Fluviicola taffensis 1 802 191579 species 0 2762318 52331 family 21 0 Ornithobacterium 2 28250 24754 40 genus 0 1 0 1 Ornithobacterium rhinotracheale species 28251 24714 10 2782232 15852 no rank 0 1 genus 3423 2782228 0 536441 3423 species Chryseobacterium taklimakanense 1 0 9 Chryseobacterium 42 genus 59732 12429 1 0 species 253 2823 1 Chryseobacterium indologenes 0 0 no rank 4695 2593645 3 species 1721091 1426 1 Chryseobacterium sp. IHB B 17019 0 1 Chryseobacterium sp. StRB126 species 878220 1397 0 1872 2015076 species Chryseobacterium sp. T16E-39 1 0 558152 934 species Chryseobacterium piperi 1 0 0 species 1798 1265445 1 Chryseobacterium camelliae Chryseobacterium glaciei 1 1014 1685010 species 0 species 1123 1324352 1 Chryseobacterium gallinarum 0 2 Riemerella genus 50 2430 34084 1 0 1 Riemerella anatipestifer species 34085 2380 0 Elizabethkingia 6 8787 308865 genus 50 0 1 Elizabethkingia genomosp. 3 1 1071 1756149 species 0 0 species 2001 172045 1 Elizabethkingia miricola 1 Elizabethkingia anophelis species 3151 1117645 0 0 species 238 1541 1 Elizabethkingia meningoseptica 973 1756150 species Elizabethkingia genomosp. 4 1 0 1 genus 1013 508 0 Weeksella virosa 1 508 1014 species 0 7 phylum 1134404 1663 0 0 1 Ignavibacteria 7 795747 1663 class 5 0 1 Ignavibacteriales 6 795748 1658 1 order 3 Melioribacteraceae 1 family 882 1334117 1 0 0 1 Melioribacter 2 881 1134403 genus 6 0 1134405 875 species Melioribacter roseus 1 0 1 Ignavibacteriaceae 2 775 795749 3 family genus 772 795750 1 0 Ignavibacterium album 1 591197 772 species 0 0 65842 2568 phylum 4 class 2568 204430 4 0 2568 218872 1 order Fibrobacterales 4 0 1 3 Fibrobacteraceae 2 family 204431 2567 1 0 1 0 2 Fibrobacter 6 genus 2565 832 0 Fibrobacter succinogenes 1 2559 833 species 11 phylum 508458 7345 0 0 1 Synergistia 11 649775 7345 class 49 Synergistales 10 7296 649776 order 37 0 1 1 0 9 Synergistaceae family 166 7259 649777 1 473 49894 genus 0 species 473 97477 1 Acetomicrobium mobile 0 Cloacibacillus 2 4500 508459 genus 6 0 1 Cloacibacillus porcorum 1 4494 1197717 species 0 0 1 Thermanaerovibrio 2 81461 894 1 genus 0 Thermanaerovibrio acidaminovorans 1 893 81462 species 1 0 genus 1 81466 623 2 Aminobacterium 0 81468 622 species Aminobacterium colombiense 1 0 genus 603 336260 1 1 Thermovirga lienii species 336261 603 0 68297 1031 phylum 4 0 1 0 6 class 203486 1031 4 Dictyoglomia 3 order 203487 1025 0 3 1025 203488 family 0 0 1 1025 13 genus 1 Dictyoglomus 3 species 14 454 1 Dictyoglomus thermophilum 0 0 513050 570 species Dictyoglomus turgidum 1 clade 12914392 1783272 1712 0 0 5 phylum 67819 1150 0 1 1663419 1150 7 class Fimbriimonadia 5 Fimbriimonadales 4 1143 1663425 4 order 0 1 1 0 10 family 1663426 1139 3 Fimbriimonadaceae 2 Fimbriimonas 8 genus 1005038 1129 1 0 species 1005039 1121 1 Fimbriimonas ginsengisoli 0 28242 544448 6 phylum Tenericutes 102 0 1 2 701 2799557 no rank 0 0 1 1912503 701 genus 1 Candidatus Izimaplasma 2 0 1 no rank 700 2624196 0 1 Candidatus Izimaplasma sp. HR1 species 1541959 700 0 2 no rank 2361 713063 1911683 1254 species Tenericutes bacterium MZ-XQ 1 0 0 species 1911684 1107 1 Tenericutes bacterium MO-XQ class 43 31969 25174 97 Mollicutes 1 0 order 15 9412 2085 44 Mycoplasmatales 1 0 1 0 family 65 9397 2092 43 Mycoplasmataceae 1 0 100 genus 2093 5736 27 Mycoplasma species 143 57372 1 Mycoplasma suis 0 0 984991 54 species Mycoplasma parvum 1 1 2683645 261 no rank 0 Mycoplasma sp. (ex Biomphalaria glabrata) 1 1749074 261 species 0 0 Mycoplasma arthritidis 1 168 2111 species Mycoplasma dispar 1 292 86660 species 0 0 2099 234 species Mycoplasma hyopneumoniae 1 0 29501 113 species Mycoplasma haemofelis 1 species 2098 326 1 Mycoplasma hominis 0 35 136241 species Mycoplasma haemocanis 1 0 0 Mycoplasma bovoculi 1 45362 222 species species 2123 226 1 Mycoplasma putrefaciens 0 species group 1245 656088 3 0 0 1 Mycoplasma mycoides species 673 2102 0 species 304 2095 1 Mycoplasma capricolum Mycoplasma leachii 1 268 2105 species 0 299 28227 species Mycoplasma penetrans 1 0 0 Mycoplasma crocodyli 1 50052 292 species 61 171632 species Mycoplasma ovis 1 0 Mycoplasma canadense 1 284 29554 species 0 Mycoplasma pneumoniae 1 81 2104 species 0 0 species 201 2128 1 Mycoplasma flocculare 0 1 Mycoplasma hyorhinis species 2100 180 1 Mycoplasma wenyonii species 51 65123 0 0 188 2118 species Mycoplasma mobile 1 Mycoplasma genitalium 1 139 2097 species 0 Mycoplasma yeatsii 1 51365 319 species 0 0 Mycoplasma gallisepticum 1 2096 222 species 2767358 2980 genus 12 0 1 Mycoplasma arginini species 235 2094 0 197 2109 species Mycoplasma synoviae 1 0 0 171284 198 species Mycoplasma cynos 1 0 species 2107 206 1 Mycoplasma pulmonis 0 1 Mycoplasma bovigenitalium species 162 2112 1 Mycoplasma bovirhinis species 170 29553 0 1 Mycoplasma agalactiae species 385 2110 0 0 212 29555 species Mycoplasma canis 1 0 species 28903 602 1 Mycoplasma bovis 2113 142 species Mycoplasma californicum 1 0 species 307 2115 1 Mycoplasma fermentans 0 0 Mycoplasma pullorum 1 48003 164 species Ureaplasma 3 616 2129 2 genus 0 1 211 134821 species Ureaplasma parvum 1 0 0 403 2130 species Ureaplasma urealyticum 1 39 Entomoplasmatales 53 order 11474 186328 1 0 0 1 7506 2131 family 9 Spiroplasmataceae 24 0 1 7497 2132 genus 229 Spiroplasma 23 385 216936 species Spiroplasma diminutum 1 0 0 281 216942 species Spiroplasma litorale 1 0 383 362837 species Spiroplasma cantharicola 1 species 216944 315 1 Spiroplasma sabaudiense 0 Spiroplasma chrysopicola 1 297 216933 species 0 species 362 2133 1 Spiroplasma citri 0 0 Spiroplasma turonicum 1 243 216946 species 0 species 216935 496 1 Spiroplasma culicicola 0 Spiroplasma taiwanense 1 2145 437 species 293 216937 species Spiroplasma floricola 1 0 0 216945 214 species Spiroplasma syrphidicola 1 315358 549 species Spiroplasma eriocheiris 1 0 304 47834 species Spiroplasma kunkelii 1 0 0 Spiroplasma helicoides 1 216938 356 species no rank 682 2637901 2 0 0 Spiroplasma sp. NBRC 100390 1 1914410 341 species 341 1898044 species Spiroplasma sp. TU-14 1 0 0 292 2136 species Spiroplasma monobiae 1 0 210 2137 species Spiroplasma apis 1 325 1114980 species Spiroplasma atrichopogonis 1 0 0 2139 254 species Spiroplasma clarkii 1 0 1 Spiroplasma corruscae species 273 216934 Spiroplasma mirum 1 2144 317 species 0 family 8 3915 33925 14 Entomoplasmataceae 1 0 1 0 54 genus 46239 2964 8 Mesoplasma 0 1 Mesoplasma lactucae species 815 138853 0 species 2151 489 1 Mesoplasma florum 0 596 225999 species Mesoplasma syrphidae 1 216427 234 species Mesoplasma chauliocola 1 0 0 species 303 2149 1 Mesoplasma entomophilum 0 species 324078 303 1 Mesoplasma coleopterae 0 1 Mesoplasma tabanidae species 219745 170 46238 943 genus 13 Entomoplasma 5 0 1 1 Entomoplasma luminosum species 197 214888 0 species 157 74700 1 Entomoplasma freundtii 0 Entomoplasma somnilux 1 215578 247 species 0 0 1 Entomoplasma melaleucae species 81459 329 0 1 186329 4245 order 4 Acholeplasmatales 13 1 0 12 Acholeplasmataceae family 15 2146 4241 1 0 5 Acholeplasma genus 42 2147 3138 1 Acholeplasma brassicae species 682 61635 0 1 Acholeplasma laidlawii species 2148 762 0 Acholeplasma palmae 1 898 38986 species 0 Acholeplasma oculi 1 754 35623 species 0 1 0 6 Candidatus Phytoplasma genus 38 1088 33926 0 3 585 85620 species group 0 Maize bushy stunt phytoplasma 1 257 202462 species 0 183 100379 species Onion yellows phytoplasma 1 0 species 229545 145 1 Aster yellows witches'-broom phytoplasma 0 species group 324 85632 1 Candidatus Phytoplasma australiense 1 59748 324 species 0 1 species group 141 85630 0 0 1 Candidatus Phytoplasma mali species 141 37692 phylum 3 21284 200795 48 Chloroflexi 1 0 1 0 5 Caldilineae 17 class 475962 2176 4 Caldilineales 14 order 475963 2159 1 0 1 0 family 5 2145 475964 3 Caldilineaceae Caldilinea 2 233191 2140 genus 58 0 1 Caldilinea aerophila 1 2082 133453 species 0 1382928 3359 class 55 Ardenticatenia 5 0 1 1 0 68 order 3304 1382929 4 Ardenticatenales 3 Ardenticatenaceae 21 family 1382930 3236 1 0 3215 1988031 51 genus Candidatus Promineofilum 2 0 1 1 Candidatus Promineofilum breve species 3164 1806508 0 0 1 Chloroflexia 11 32061 5473 class 9 1 0 10 Chloroflexales 30 order 32064 5464 0 2431 1508594 suborder 5 0 1 Chloroflexaceae 5 2431 1106 7 family 2424 1107 genus 59 Chloroflexus 4 0 1 0 1 Chloroflexus aggregans species 554 152260 1108 1811 911 species Chloroflexus aurantiacus 2 0 1 0 Chloroflexus sp. Y-400-fl 1 900 480224 strain 0 suborder 3003 1508595 4 0 1 Roseiflexaceae 4 1508635 3003 family 22 0 1 Roseiflexus 3 120961 2981 genus 10 0 no rank 2609473 1785 1 species 1785 357808 1 Roseiflexus sp. RS-1 0 1 Roseiflexus castenholzii species 1186 120962 0 Thermomicrobia 9 189775 2106 class 43 0 1 4 subclass 85000 1666 0 order 25 85001 1666 4 Sphaerobacterales 1 0 255728 1641 suborder 3 0 1 0 3 Sphaerobacteraceae family 3 85002 1641 genus 108 1638 2056 2 Sphaerobacter 1 0 species 1530 2057 1 Sphaerobacter thermophilus 0 Thermomicrobiales 4 397 189776 order 4 0 1 1 0 3 Thermomicrobiaceae 8 family 189777 393 1 0 genus 2 499 385 2 Thermomicrobium 500 383 species Thermomicrobium roseum 1 0 Anaerolineae 8 292625 3540 30 class 0 1 Anaerolineales 7 292629 3510 order 21 0 1 6 Anaerolineaceae family 13 292628 3489 1 0 0 1 2019482 751 genus 4 Brevefilum 2 1986204 747 species Brevefilum fermentans 1 0 1324 233189 genus 1 Anaerolinea 2 0 1 1323 167964 species Anaerolinea thermophila 1 0 1 no rank 1324991 1401 0 1889813 1401 species Anaerolineaceae bacterium oral taxon 439 1 0 1 0 28 class 4627 301297 9 Dehalococcoidia 1 0 genus 35 670486 1927 3 Dehalogenimonas 0 1 Dehalogenimonas formicexedens species 1839801 770 species 1122 552810 1 Dehalogenimonas lykanthroporepellens 0 5 Dehalococcoidales 6 order 1202465 2672 1 0 0 1 Dehalococcoidaceae 4 1202464 2666 5 family Dehalococcoides 3 61434 2661 3 genus 0 1 0 1 Dehalococcoides mccartyi species 61435 2172 0 1 237581 486 no rank 0 1522671 486 species Dehalococcoides sp. UCH007 1 phylum 129 201174 1592504 653 Actinobacteria 1 0 0 946 1752188 no rank 4 201 1848754 species Actinobacteria bacterium IMCC19121 1 0 Actinobacteria bacterium IMCC26077 1 206 1848755 species 0 species 1848255 249 1 Actinobacteria bacterium IMCC25003 0 0 1848756 290 species Actinobacteria bacterium IMCC26103 1 Coriobacteriia 32 174353 84998 2007 class 0 1 1 0 17 Eggerthellales 1824 order 113417 1643822 1 0 16 Eggerthellaceae 12562 family 111593 1643826 0 1 24159 447020 8 genus Adlercreutzia 2 0 24151 446660 species Adlercreutzia equolifaciens 1 3 Gordonibacter genus 119 25334 644652 1 0 10778 1841863 species Gordonibacter massiliensis 1 0 0 species 14437 1335613 1 Gordonibacter urolithinfaciens 147 genus 31414 84111 3 Eggerthella 1 0 1 Eggerthella lenta species 84112 25015 0 0 no rank 6252 2648737 1 species 502558 6252 1 Eggerthella sp. YY7918 0 genus 1981050 4216 1 0 Phoenicibacter massiliensis 1 4216 1944646 species 0 0 1 79603 4674 genus 9 Denitrobacterium 2 4665 79604 species Denitrobacterium detoxificans 1 0 84108 8464 8 genus Slackia 2 0 1 species 8456 84110 1 Slackia heliotrinireducens 0 1 0 genus 5 770 84162 2 Cryptobacterium 0 species 765 84163 1 Cryptobacterium curtum 14 Coriobacteriales order 792 84999 58929 1 0 1 0 6 Coriobacteriaceae 1400 family 84107 32354 Collinsella 2 21470 102106 genus 84 0 1 Collinsella aerofaciens 1 74426 21386 species 0 1 5697 84113 no rank 0 species 1531429 5697 1 Coriobacteriaceae bacterium 68-1-3 0 1 0 8 genus 3787 33870 2 Coriobacterium 0 1 Coriobacterium glomerans species 3779 33871 1 0 7 Atopobiaceae family 422 25783 1643824 1 0 183 genus 23811 133925 4 Olsenella 1 2638792 3792 no rank 0 Olsenella sp. oral taxon 807 1 3792 712411 species 0 0 1 Olsenella uli species 7158 133926 Olsenella sp. Marseille-P2300 1 1805478 12678 species 0 genus 2767353 1544 1 0 Atopobium parvulum 1 1382 1544 species 0 0 1 Atopobium genus 6 1380 6 Rubrobacteria 13 class 2638 84995 1 0 Rubrobacterales 5 2625 84996 48 order 0 1 1 0 4 Rubrobacteraceae family 44 84997 2577 100 genus 2533 42255 3 Rubrobacter 1 0 0 species 692 42256 1 Rubrobacter radiotolerans Rubrobacter xylanophilus 1 49319 1741 species 0 1 0 598 Actinobacteria 11621 class 1760 1409971 1 0 order 11 2039638 2574 12 Candidatus Nanopelagicales 2162846 2563 family 11 0 7 Candidatus Planktophila 28 genus 622681 2059 1 0 0 573600 196 species Candidatus Planktophila limnetica 1 0 Candidatus Planktophila sulfonica 1 1884904 266 species species 1884914 371 1 Candidatus Planktophila dulcis 0 species 258 1884907 1 Candidatus Planktophila vernalis 0 Candidatus Planktophila versatilis 1 375 1884905 species 0 1 Candidatus Planktophila lacus species 565 1884913 0 0 1 2039639 504 2 genus Candidatus Nanopelagicus 4 1 Candidatus Nanopelagicus abundans species 1884916 234 0 1 Candidatus Nanopelagicus hibericus species 179 1884915 0 0 species 1884634 89 1 Candidatus Nanopelagicus limnes 195 order 32955 85009 33 Propionibacteriales 1 0 13 Nocardioidaceae family 254 10836 85015 1 0 Micropruina 2 1973 116071 32 genus 0 1 0 75385 1941 species Micropruina glycogenica 1 2 Aeromicrobium genus 35 1196 2040 1 0 0 2041 1161 species Aeromicrobium erythreum 1 50 genus 1653 182639 2 Kribbella 1 0 0 species 182640 1603 1 Kribbella flavida 1 0 2 Pimelobacter 22 genus 2044 1619 0 1597 2045 species Pimelobacter simplex 1 4 Nocardioides 61 genus 1839 4141 1 0 0 species 1281 2045452 1 Nocardioides sp. 78 0 1 no rank 1669 2615069 1 Nocardioides sp. JS614 species 196162 1669 0 0 1130 450734 species Nocardioides dokdonensis 1 1 0 19 Propionibacteriaceae 436 family 31957 21924 0 1 1090 2801844 genus 0 1 Pseudopropionibacterium propionicum species 1090 1750 0 1 1743 4543 genus 91 Propionibacterium 3 species 1744 3848 1 Propionibacterium freudenreichii 0 no rank 604 2608905 1 0 Propionibacterium sp. oral taxon 193 1 671223 604 species 0 2 Acidipropionibacterium genus 29 2139 1912215 1 0 1 Acidipropionibacterium acidipropionici species 1748 2110 0 1 0 5 Tessaracoccus genus 42 7209 72763 species 1332264 2021 1 Tessaracoccus aquimaris 0 Tessaracoccus flavus 1 1606 1610493 species 0 1 no rank 2070 2635419 0 0 1909732 2070 species Tessaracoccus sp. T2.5-30 1 399497 1470 species Tessaracoccus flavescens 1 0 1 0 52 genus 1346 29404 2 Microlunatus 0 29405 1294 species Microlunatus phosphovorus 1 0 1 1272 203133 genus no rank 1272 2633994 1 0 0 species 1871034 1272 1 Propionimicrobium sp. Marseille-P3275 1 0 genus 28 1912216 3889 4 Cutibacterium 0 species 1747 959 1 Cutibacterium acnes 0 species 874 33011 1 Cutibacterium granulosum 0 Cutibacterium avidum 1 2028 33010 species 1 0 70 order 2037 33292 20 Actinomycetales Actinomycetaceae 19 2049 33222 8015 family 0 1 15438 1654 genus 335 Actinomyces 9 0 1 111015 1676 species Actinomyces radicidentis 1 0 0 species 2753 544580 1 Actinomyces oris 3 no rank 2609248 5386 0 0 Actinomyces sp. oral taxon 897 1 1791 2081702 species 0 Actinomyces sp. Chiba101 1 1851395 1522 species 1 Actinomyces sp. oral taxon 414 species 2073 712122 0 1912795 603 species Actinomyces sp. VUL4_3 1 0 0 Actinomyces pacaensis 1 3334 1852377 species Actinomyces gaoshouyii 1 1960083 1351 species 0 genus 2052 2529408 1 0 1 Actinomyces meyeri species 2052 52773 0 0 1 661 28263 genus 6 Arcanobacterium 2 species 655 28264 1 Arcanobacterium haemolyticum 0 1 0 genus 3 1653174 827 2 Actinotignum 1 Actinotignum schaalii species 824 59505 0 genus 16 1069494 2128 2 Trueperella 1 0 0 species 1661 2112 1 Trueperella pyogenes 2050 4101 genus 336 Mobiluncus 2 0 1 Mobiluncus curtisii 1 2051 3765 species 0 1 0 26 Bifidobacteriales 150 order 85004 688955 0 1 688805 31953 family 11145 Bifidobacteriaceae 25 genus 818 196081 1 0 818 78259 species Scardovia inopinata 1 0 0 1 196082 1275 2 genus Parascardovia 2 0 species 78258 1273 1 Parascardovia denticolens 1 0 19 Bifidobacterium 2743 genus 674127 1678 0 species 35760 2626 1 Bifidobacterium choerinum 0 Bifidobacterium indicum 1 1691 1170 species 0 Bifidobacterium coryneforme 1 1687 1071 species 1 Bifidobacterium scardovii species 5947 158787 0 species 41202 1685 1 Bifidobacterium breve 0 1 Bifidobacterium actinocoloniiforme species 1373 638619 0 0 331694 28026 species Bifidobacterium pseudocatenulatum 1 Bifidobacterium thermophilum 1 3914 33905 species 0 1 Bifidobacterium asteroides species 1684 2116 0 0 species 1680 20254 1 Bifidobacterium adolescentis 0 Bifidobacterium pseudolongum 1 3820 1694 species 1689 4676 species Bifidobacterium dentium 1 0 Bifidobacterium catenulatum 2 122511 1686 37491 species 0 1 0 subspecies 630129 85020 1 Bifidobacterium kashiwanohense 0 Bifidobacterium longum 1 90138 216816 species 0 Bifidobacterium animalis 1 28025 3709 species 0 Bifidobacterium bifidum 1 27997 1681 species 0 7166 1683 species Bifidobacterium angulatum 1 1 0 2 Gardnerella 1 genus 2701 1440 species 2702 1439 1 Gardnerella vaginalis 0 0 52018 365 no rank 1 0 1 Actinobacteria bacterium IMCC26256 species 365 1650658 0 1 414714 4239 24 order Catenulisporales 4 1 0 3 Catenulisporaceae family 58 414877 4215 0 1 Catenulispora 2 4157 414878 genus 23 0 304895 4134 species Catenulispora acidiphila 1 0 1 Kineosporiales 4 2398 622452 6 order 3 Kineosporiaceae 43 family 2392 83778 1 0 1 0 2 Kineococcus 31 genus 2349 33981 species 2318 131568 1 Kineococcus radiotolerans 0 3 order 622450 1620 0 3 Actinopolysporaceae 12 family 1620 622451 1 0 1 0 genus 13 1608 1849 2 Actinopolyspora 0 1595 414996 species Actinopolyspora erythraea 1 410 order 85011 183351 82 Streptomycetales 1 0 2062 182941 family 1332 Streptomycetaceae 81 0 1 1 0 5 Kitasatospora 105 genus 11032 2063 2066 3334 species Kitasatospora setae 1 0 1894 2130 species Kitasatospora aureofaciens 1 0 0 no rank 2633591 3432 1 1 Kitasatospora sp. MMS16-BH015 species 2018025 3432 0 0 species 2031 68173 1 Kitasatospora albolonga 1 0 75 Streptomyces 6530 genus 1883 170577 0 629295 3535 species group 2 0 species subgroup 1785 1482558 1 Streptomyces globisporus 1 1785 1908 species 0 0 species subgroup 1750 1482596 1 0 Streptomyces griseus 1 1911 1750 species 0 1 Streptomyces albulus species 2298 68570 1 Streptomyces lydicus species 5695 47763 0 1 Streptomyces hygroscopicus species 1912 5722 0 Streptomyces xinghaiensis 1 1038928 1587 species 0 4711 1888 species Streptomyces albus 1 0 1 Streptomyces puniciscabiei species 1930 164348 0 0 33903 1908 species Streptomyces avermitilis 1 species 553510 2184 1 Streptomyces gilvosporeus 0 0 species 3122 54571 1 Streptomyces venezuelae 68192 2123 species Streptomyces cyaneogriseus 1 0 species 1918 1950 1 Streptomyces peucetius 0 1 Streptomyces alfalfae species 1642299 2134 0 0 1931 1901 species Streptomyces clavuligerus 1 species 2094 1971 1 Streptomyces noursei 0 species 2008 2049881 1 Streptomyces sp. XZHG99 0 Streptomyces collinus 1 42684 1964 species 0 Streptomyces chartreusis 1 1969 2050 species 0 Streptomyces alboflavus 1 1820 67267 species 0 species 68202 1265 1 Streptomyces fulvissimus 0 1 Streptomyces lividans species 2306 1916 0 0 species 29303 2513 1 Streptomyces cattleya 0 1 Streptomyces pratensis species 1169025 1384 species 2612 92644 1 Streptomyces malaysiensis 0 0 1 Streptomyces niveus species 1686 193462 1 Streptomyces autolyticus species 75293 2350 0 Streptomyces sp. S10(2016) 1 1791 1783515 species 0 0 1 Streptomyces formicae species 1616117 1533 1 Streptomyces pactum species 3587 68249 0 species 2639 68280 1 Streptomyces violaceusniger 0 1 Streptomyces vietnamensis species 362257 2614 0 Streptomyces reticuli 1 1926 2116 species 0 species 285473 1398 1 Streptomyces rubrolavendulae 0 0 48683 2593676 no rank 24 species 2580 206662 1 Streptomyces sp. FR-008 0 1 Streptomyces sp. 769 species 2799 1262452 0 0 Streptomyces sp. CFMR 7 1 1923 1649184 species 1 Streptomyces sp. SirexAA-E species 1795 862751 0 0 1 Streptomyces sp. 3211 species 1822 1964449 0 1 Streptomyces sp. CdTB01 species 1725411 2230 species 2094021 1618 1 Streptomyces sp. WAC00288 0 1685 1849967 species Streptomyces sp. SAT1 1 0 Streptomyces sp. CNQ-509 1 444103 2114 species 0 1 Streptomyces sp. CLI2509 species 1984801 1120 0 Streptomyces sp. 4F 1 2178 1751294 species 0 0 Streptomyces sp. Mg1 1 2235 465541 species Streptomyces sp. P3 1 2267 2135430 species 0 0 2065 1972846 species Streptomyces sp. Sge12 1 0 1 Streptomyces sp. PAMC 26508 species 1265601 1964 1753 1961713 species Streptomyces sp. MOE7 1 0 1361 234612 species Streptomyces sp. TN58 1 0 species 2037 1812480 1 Streptomyces sp. fd1-xmd 0 0 Streptomyces sp. CCM_MD2014 1 1561022 1993 species 0 species 1750 1661694 1 Streptomyces sp. Tue 6075 1495638 2603 species Streptomyces sp. M56 1 0 0 1 Streptomyces sp. RTd22 species 2574 1841249 species 2059884 2449 1 Streptomyces sp. CMB-StM0423 0 0 1768 1837283 species Streptomyces sp. S8 1 0 Streptomyces violaceoruber 1 1785 1935 species 0 Streptomyces xiamenensis 1 2149 408015 species 0 Streptomyces ambofaciens 1 2044 1889 species 0 species 2037 1914 1 Streptomyces lavendulae species 1680 1940 1 Streptomyces albireticuli 0 2891 1907 species Streptomyces glaucescens 1 0 species 1803 146923 1 Streptomyces parvulus 0 species 2087 1930 1 Streptomyces scabiei 0 0 2702 1915 species Streptomyces lincolnensis 1 0 species 68214 2345 1 Streptomyces griseochromogenes Streptomyces pristinaespiralis 1 38300 2380 species 0 1 Streptomyces leeuwenhoekii species 1437453 2123 0 0 2 4716 1477431 species group 0 Streptomyces sampsonii 1 2201 42239 species 0 Streptomyces coelicolor 1 2515 1902 species 0 species 1456 1355015 1 Streptomyces pluripotens 0 Streptomyces bingchenggensis 1 2638 379067 species Geodermatophilales 8 5755 1643682 order 39 0 1 0 1 Geodermatophilaceae 7 85030 5716 family 129 1 0 31 genus 2118 88138 2 Modestobacter species 2087 477641 1 Modestobacter marinus 0 2 Geodermatophilus genus 40 1807 1860 1 0 1861 1767 species Geodermatophilus obscurus 1 0 1662 38501 genus 17 Blastococcus 2 0 1 0 1 Blastococcus saxobsidens species 138336 1645 0 1 85012 21516 order 113 Streptosporangiales 16 0 1 Nocardiopsaceae 7 7656 83676 family 140 1238 83677 16 genus Thermobifida 2 0 1 species 1222 2021 1 Thermobifida fusca 0 4 Nocardiopsis 133 genus 2013 6278 1 0 53437 1534 species Nocardiopsis alba 1 0 species 2802 2014 1 Nocardiopsis dassonvillei 0 1 Nocardiopsis gilva species 280236 1809 0 0 1 9840 2004 family 134 Streptosporangiaceae 5 0 1 Nonomuraea 2 83681 5579 70 genus 0 5509 2593643 no rank 1 0 1909395 5509 species Nonomuraea sp. ATCC 55076 1 4127 2000 33 genus Streptosporangium 2 0 1 Streptosporangium roseum 1 2001 4094 species 0 family 35 2012 3907 3 Thermomonosporaceae 1 0 2019 3872 91 genus Thermomonospora 2 0 1 0 3781 2020 species Thermomonospora curvata 1 Micromonosporales 20 31279 85008 order 55 0 1 0 1 Micromonosporaceae 19 28056 31224 425 family Plantactinospora 4 7718 673534 122 genus 0 1 3 no rank 7596 2631981 0 1 Plantactinospora sp. KBS50 species 2860 2024580 0 1 Plantactinospora sp. BC1 species 2108470 2483 0 0 2071627 2253 species Plantactinospora sp. BB1 1 3 Salinispora 28 genus 168694 3111 1 0 0 Salinispora tropica 1 1312 168695 species 0 Salinispora arenicola 1 1771 168697 species 0 Verrucosispora 1 84593 2 genus 1 0 4 Micromonospora genus 109 1873 7698 0 species 1003110 2130 1 Verrucosispora maris 3056 2617518 no rank 1 0 1 Micromonospora sp. L5 species 648999 3056 0 species 47850 2403 1 Micromonospora aurantiaca 0 genus 223 1865 12270 6 Actinoplanes 1 0 0 Actinoplanes friuliensis 1 2299 196914 species 0 species 2464 1866 1 Actinoplanes missouriensis no rank 7284 2626549 3 0 1 Actinoplanes sp. N902-109 species 2884 649831 0 species 2200 2033844 1 Actinoplanes sp. SE50 0 0 Actinoplanes sp. SE50/110 1 134676 2200 species 1 0 order 1691 186442 85007 163 Corynebacteriales 373 697024 no rank 2 0 genus 4 373 1847725 2 Lawsonella 1 0 0 species 369 1528099 1 Lawsonella clevelandensis Segniliparaceae 3 733 316606 family 8 0 1 0 1 Segniliparus 2 286801 725 11 genus 0 Segniliparus rotundus 1 286802 714 species 0 1 1762 68759 family 274 Mycobacteriaceae 57 genus 20464 1866885 13 0 1797 1712 species Mycobacterium thermoresistibile 1 0 0 Mycobacterium fortuitum 1 1159 1766 species 0 1 Mycobacterium vanbaalenii species 110539 1708 0 species 1771 1542 1 Mycobacterium phlei Mycobacterium goodii 1 134601 1542 species 0 0 Mycobacterium chubuense 1 1553 1800 species 0 species 1795 1943 1 Mycobacterium neoaurum 1 Mycobacterium litorale species 758802 1437 0 0 1 Mycobacterium vaccae species 1915 1810 0 1 Mycobacterium smegmatis species 1772 1629 36814 1160 species Mycobacterium rhodesiae 1 0 Mycobacterium aurum 1 1791 1741 species 0 0 Mycobacterium gilvum 1 1423 1804 species Mycobacterium 34 1763 38761 3004 genus 0 1 species 377 1769 1 Mycobacterium leprae 0 0 1 1306 2249310 species group 1306 722731 species Mycobacterium shigaense 1 0 1 Mycobacterium dioxanotrophicus species 482462 1554 0 1 Mycobacterium liflandii species 261524 1052 0 1809 1290 species Mycobacterium ulcerans 1 0 Mycobacterium kansasii 1 1768 1647 species 0 0 4 species group 2305 77643 Mycobacterium tuberculosis 3 1773 1684 species 593 0 1 0 biotype 547 1765 1 Mycobacterium bovis 0 biotype 33894 544 1 Mycobacterium africanum 0 1 Mycobacterium canettii species 78331 621 0 species 1313 1781 1 Mycobacterium marinum 0 1 Mycobacterium haemophilum species 810 29311 8 species group 120793 7639 0 0 Mycobacterium paraintracellulare 1 1138383 319 species 0 species 1375 339268 1 Mycobacterium colombiense 737 701042 species Mycobacterium marseillense 1 0 0 1 Mycobacterium avium species 1764 2538 4 Mycobacterium intracellulare species 852 2670 1767 1 0 subspecies 353 1203599 1 Mycobacterium yongonense 0 Mycobacterium chimaera 1 222805 1153 subspecies 0 subspecies 312 35617 1 Mycobacterium indicus pranii 0 no rank 16464 2642494 13 0 0 species 930 1561223 1 Mycobacterium sp. QIA-37 0 Mycobacterium sp. djl-10 1 1936 1879023 species 0 species 1682113 1415 1 Mycobacterium sp. YC-RL4 0 1 Mycobacterium sp. NRRL B-3805 species 1570328 1943 1920667 1420 species Mycobacterium sp. WY10 1 0 0 species 1713 2051552 1 Mycobacterium sp. PYR15 0 1 Mycobacterium sp. MOTT36Y species 1168287 290 Mycobacterium sp. EPa45 1 1014 1545728 species 0 1273687 1103 species Mycobacterium sp. VKM Ac-1817D 1 0 164756 967 species Mycobacterium sp. MCS 1 0 species 1696 212767 1 Mycobacterium sp. JS623 0 1 Mycobacterium sp. KMS species 189918 988 0 0 164757 1049 species Mycobacterium sp. JLS 1 2 Hoyosella 1 genus 697025 409 1 0 0 639313 408 species Hoyosella subflava 1 0 5 6700 670516 genus 0 Mycobacterium stephanolepidis 1 1520670 1000 species 83262 863 species Mycobacterium immunogenum 1 0 0 species 1537 1578165 1 Mycobacterium saopaulense 0 1 Mycobacterium chelonae species 828 1774 Mycobacterium abscessus 1 36809 2472 species 0 0 genus 2151 1073531 2 species 1154 875328 1 Mycobacterium sinense 0 0 1788 997 species Mycobacterium terrae 1 family 7 85029 1922 4 Dietziaceae 1 0 10 genus 37914 1915 3 Dietzia 1 0 0 no rank 2617939 753 1 0 Dietzia sp. oral taxon 368 1 712270 753 species 0 species 1152 499555 1 Dietzia timorensis 8229 85026 156 family Gordoniaceae 9 0 1 Gordonia 8 2053 8073 131 genus 0 1 0 species 2054 1171 1 Gordonia bronchialis no rank 2183 2657482 2 0 0 Gordonia sp. KTR9 1 1373 337191 species 1 Gordonia sp. YC-JH1 species 810 2059875 0 Gordonia terrae 1 2055 1330 species 0 0 species 1178 1136941 1 Gordonia phthalatica 0 1004901 1057 species Gordonia iterans 1 1 Gordonia polyisoprenivorans species 84595 1023 0 0 1 85025 43885 family 234 Nocardiaceae 31 164 genus 1817 17662 7 Nocardia 1 0 2006 37330 species Nocardia nova 1 0 1 Nocardia terpenica species 455432 2368 0 0 1 Nocardia farcinica species 37329 2201 0 species 2619 37332 1 Nocardia seriolae 37326 3835 species Nocardia brasiliensis 1 0 species 4469 135487 1 Nocardia cyriacigeorgica 0 25989 1827 788 genus Rhodococcus 23 0 1 0 1829 885 species Rhodococcus rhodochrous 1 1 Rhodococcus opacus species 3843 37919 0 1310 43767 species Rhodococcus hoagii 1 0 species 103816 1086 1 Rhodococcus pyridinivorans 0 0 species 922 1828 1 Rhodococcus fascians 0 no rank 10779 192944 12 935199 979 species Rhodococcus sp. p52 1 0 species 1045808 747 1 Rhodococcus sp. YL-1 0 1653478 968 species Rhodococcus sp. PBTS 1 1 0 1 Rhodococcus sp. H-CA8f species 1727214 888 0 1653479 1075 species Rhodococcus sp. PBTS 2 1 0 0 Rhodococcus sp. B7740 1 1564114 1157 species 1 Rhodococcus sp. 2G species 627 1570939 0 species 1723645 619 1 Rhodococcus sp. 008 0 species 1805827 943 1 Rhodococcus sp. MTM3W5.2 0 1807790 594 species Rhodococcus sp. BH4 1 0 679318 469 species Rhodococcus sp. WMMA185 1 0 1033922 1713 species Rhodococcus sp. WB1 1 0 0 1455 191292 species Rhodococcus aetherivorans 1 0 Rhodococcus jostii 1 132919 1551 species 0 1 Rhodococcus qingshengii species 334542 909 0 Rhodococcus ruber 1 1378 1830 species 0 species 1833 1083 1 Rhodococcus erythropolis 688 family 58335 1653 52 Corynebacteriaceae 1 0 1 0 genus 2178 1716 57647 51 Corynebacterium Corynebacterium humireducens 1 1223514 1808 species 0 0 1 Corynebacterium efficiens species 152794 1771 891 161896 species Corynebacterium camporealensis 1 0 0 741 1705 species Corynebacterium stationis 1 Corynebacterium phocae 1 845 161895 species 0 0 1697 711 species Corynebacterium ammoniagenes 1 species 890 92706 1 [Brevibacterium] flavum 0 Corynebacterium glaucum 1 1047 187491 species 0 0 species 1796 191493 1 Corynebacterium sphenisci species 28028 751 1 Corynebacterium flavescens 0 0 1 Corynebacterium crudilactis species 635 1652495 0 1050174 661 species Corynebacterium epidermidicanis 1 0 1 Corynebacterium frankenforstense species 1757 1230998 Corynebacterium doosanense 1 1037 1121358 species 0 species 575200 855 1 Corynebacterium maris 0 0 Corynebacterium simulans 1 146827 1878 species 1 Corynebacterium variabile species 1727 1289 0 species 1023 65058 1 Corynebacterium ulcerans 0 0 Corynebacterium resistens 1 258224 780 species 0 1 Corynebacterium pseudotuberculosis species 1719 806 0 1 Corynebacterium striatum species 43770 2512 0 Corynebacterium argentoratense 1 42817 726 species 1119 1072256 species Corynebacterium uterequi 1 0 0 1 Corynebacterium urealyticum species 43771 774 0 1 Corynebacterium kroppenstedtii species 514 161879 0 1 Corynebacterium aquilae species 1001 203263 2624378 1798 no rank 2 0 929 1487956 species Corynebacterium sp. ATCC 6931 1 0 0 702967 869 species Corynebacterium sp. NML98-0116 1 0 1 Corynebacterium glyciniphilum species 1404244 1324 0 species 307 35755 1 Corynebacterium kutscheri species 161899 804 1 Corynebacterium singulare 0 0 species 1721 810 1 Corynebacterium callunae 0 191610 905 species Corynebacterium atypicum 1 1 Corynebacterium mustelae species 571915 367 0 Corynebacterium marinum 1 349751 1323 species 0 0 species 1718 1629 1 Corynebacterium glutamicum 1546 225326 species Corynebacterium halotolerans 1 0 0 1 Corynebacterium testudinoris species 1203 136857 Corynebacterium deserti 1 1076 1408191 species 0 0 species 35757 640 1 Corynebacterium cystitidis 0 Corynebacterium aurimucosum 1 169292 1782 species 0 species 873 1231000 1 Corynebacterium lactis 156978 1170 species Corynebacterium imitans 1 0 species 805 1717 1 Corynebacterium diphtheriae 0 0 species 89154 685 1 Corynebacterium terpenotabidum 108486 1682 species Corynebacterium falsenii 1 0 0 species 401472 855 1 Corynebacterium ureicelerivorans Corynebacterium jeikeium 1 2111 38289 species 0 757 160386 species Corynebacterium casei 1 0 0 species 38305 2399 1 Corynebacterium vitaeruminis 0 1 2515 85028 13 family Tsukamurellaceae 4 3 Tsukamurella genus 19 2502 2060 1 0 Tsukamurella tyrosinosolvens 1 1628 57704 species 0 1 Tsukamurella paurometabola species 855 2061 0 0 no rank 1103 1643818 2 Thermobispora 2 1103 147067 1 genus 0 1 Thermobispora bispora 1 1102 2006 species 0 167 order 85010 62595 42 Pseudonocardiales 1 0 905 family 2070 62428 41 Pseudonocardiaceae 1 0 0 1 3670 2071 genus 13 Saccharothrix 2 0 species 103731 3657 1 Saccharothrix espanaensis Prauserella 2 142577 1643 5 genus 0 1 Prauserella marina 1 1638 530584 species 0 0 1 Amycolatopsis 7 15731 1813 292 genus species 208439 1918 1 Amycolatopsis japonica 0 2618356 3899 no rank 2 0 0 1 Amycolatopsis sp. BJA-103 species 1911175 1758 0 Amycolatopsis sp. AA4 1 2141 1896961 species 4165 31958 species Amycolatopsis orientalis 1 0 1 Amycolatopsis methanolica species 2349 1814 0 0 species 33910 3108 1 Amycolatopsis mediterranei 1851 946 5 genus Saccharomonospora 2 0 1 0 1 Saccharomonospora viridis species 941 1852 1 0 genus 156 65496 8741 6 Actinoalloteichus 0 species 1200 340345 1 Actinoalloteichus hymeniacidonis 0 1961 1470176 species Actinoalloteichus hoggarensis 1 Actinoalloteichus sp. ADI127-7 1 1975 1612552 species 0 0 2 2644606 3449 no rank Actinoalloteichus sp. GBA129-24 1 1959 1612551 species 0 0 Actinoalloteichus sp. AHMU CJ021 1 1490 2072503 species 2 Kibdelosporangium genus 17 2728 2029 1 0 0 Kibdelosporangium phytohabitans 1 860235 2711 species 2 Kutzneria genus 16 43356 4287 1 0 0 Kutzneria albida 1 43357 4271 species Actinosynnema 3 6386 40566 165 genus 0 1 0 Actinosynnema pretiosum 1 42197 3070 species 0 1 Actinosynnema mirum species 3151 40567 Pseudonocardia 8 1847 10467 genus 348 0 1 no rank 2619320 8402 6 0 0 species 1096868 1252 1 Pseudonocardia sp. EC080625-04 0 Pseudonocardia sp. AL041005-10 1 445576 1613 species 0 1 Pseudonocardia sp. EC080619-01 species 1096856 1321 0 1 Pseudonocardia sp. EC080610-09 species 1319 1688404 0 1690815 1672 species Pseudonocardia sp. HH130630-07 1 0 1 Pseudonocardia sp. HH130629-09 species 1225 1641402 0 species 240495 1717 1 Pseudonocardia dioxanivorans 2 Alloactinosynnema 21 genus 1648 674734 1 0 0 1 no rank 1627 2636053 Alloactinosynnema sp. L-07 1 1627 1653480 species 0 0 1 Saccharopolyspora 2 1835 2980 genus 11 species 2969 1836 1 Saccharopolyspora erythraea 0 18 genus 2296 165301 2 Lentzea 1 0 1 Lentzea guizhouensis species 1586287 2278 0 142 Micrococcales 1066 order 85006 127700 1 0 1 133 577468 no rank 0 1 genus 133 2038 0 0 1 Tropheryma whipplei species 133 2039 0 1 Cellulomonadaceae 6 5753 85016 24 family 1 0 genus 97 1707 5729 5 Cellulomonas 1 no rank 1082 2620175 0 1 Cellulomonas sp. PSBB021 species 1082 2003551 0 Cellulomonas flavigena 1 1711 1655 species 0 0 1145 11 species Cellulomonas gilvus 1 0 1 Cellulomonas fimi species 1708 1750 38 Micrococcaceae family 2085 48739 1268 1 0 genus 829 2078575 1 0 species 829 1618207 1 Arthrobacter sp. IHBB 11108 0 Neomicrococcus 2 1868332 1428 genus 22 0 1 species 1406 556325 1 Neomicrococcus aestuarii 0 Arthrobacter 15 1663 23957 genus 515 0 1 0 species 37928 1848 1 Arthrobacter crystallopoietes 0 12 235627 19038 no rank 1 Arthrobacter sp. ERGS1:01 species 1520 1704044 0 species 1806905 1219 1 Arthrobacter sp. ZXY-2 0 0 species 1047 1771959 1 Arthrobacter sp. ATCC 21022 0 290399 1294 species Arthrobacter sp. FB24 1 0 species 2020486 1519 1 Arthrobacter sp. YN 0 species 1291 1849032 1 Arthrobacter sp. U41 species 1470 1494608 1 Arthrobacter sp. PAMC 25486 0 0 1 Arthrobacter sp. QXT-31 species 1357915 1977 0 species 2496 1652545 1 Arthrobacter sp. YC-RL1 0 1 Arthrobacter sp. PGP41 species 2079227 1815 0 1 Arthrobacter sp. Rue61a species 1005 1118963 0 species 1690248 2385 1 Arthrobacter sp. LS16 species 656366 2556 1 Arthrobacter alpinus 0 0 1 genus 1742992 1100 1100 43663 species Paenarthrobacter aurescens 1 0 genus 93 57493 4443 4 Kocuria 1 0 1 Kocuria flava species 446860 1595 0 0 Kocuria palustris 1 1254 71999 species 0 1501 72000 species Kocuria rhizophila 1 0 1 genus 1645 569 1 Renibacterium salmoninarum species 1646 569 0 Micrococcus 2 1413 1269 11 genus 0 1 0 1 Micrococcus luteus species 1402 1270 15 genus 1742989 2250 2 Glutamicibacter 1 0 2235 256701 species Glutamicibacter arilaitensis 1 0 0 1 Rothia 3 32207 4056 genus 26 3082 43675 species Rothia mucilaginosa 1 0 0 1 Rothia dentocariosa species 948 2047 1116 596707 genus 7 Sinomonas 2 0 1 species 1109 37927 1 Sinomonas atrocyanea 0 0 1 Pseudarthrobacter 4 5493 1742993 genus 36 0 Pseudarthrobacter phenanthrenivorans 1 361575 1622 species species 85085 1860 1 Pseudarthrobacter chlorophenolicus 0 species 1975 121292 1 Pseudarthrobacter sulfonivorans 0 25 family 1735 145360 3 Sanguibacteraceae 1 0 Sanguibacter 2 60919 1710 genus 42 0 1 0 1 Sanguibacter keddieii species 1668 60920 0 1 85018 498 family 8 Dermatophilaceae 2 490 1862 genus 1 0 0 490 1863 species Dermatophilus congolensis 1 11 Dermabacteraceae 177 family 11114 85020 1 0 genus 144 9563 43668 6 Brachybacterium 1 0 0 1 Brachybacterium ginsengisoli species 1745 1331682 0 no rank 1880 2623841 1 0 species 1880 1903186 1 Brachybacterium sp. P6-10-X1 0 Brachybacterium sp. VM2412 1 1804 2017484 species 0 Brachybacterium faecium 1 43669 2160 species 0 species 2017485 1830 1 Brachybacterium sp. VR2415 1 0 2 Dermabacter 2 genus 36739 762 Dermabacter vaginalis 1 1630135 760 species 0 612 472568 3 genus Devriesea 2 0 1 0 species 472569 609 1 Devriesea agamarum 0 1 Brevibacteriaceae 3 2601 85019 6 family 2 Brevibacterium 60 genus 1696 2595 1 0 1 Brevibacterium linens species 1703 2535 0 0 1 Dermacoccaceae 7 145357 4697 family 141 1 0 2 Luteipulveratus genus 44 1987 745364 0 1 Luteipulveratus mongoliensis species 571913 1943 genus 22 1687 57499 2 Kytococcus 1 0 1 Kytococcus sedentarius species 1276 1665 0 1 0 1 genus 57495 882 2 Dermacoccus 0 1274 881 species Dermacoccus nishinomiyaensis 1 0 2 family 125316 1507 0 1 84756 1507 genus 22 Beutenbergia 2 0 Beutenbergia cavernae 1 1485 84757 species 0 1 85017 6991 107 family Promicromonosporaceae 9 1 0 2 Xylanimonas genus 8 186188 1754 0 Xylanimonas cellulosilytica 1 186189 1746 species 0 1 Cellulosimicrobium 3 157920 2386 genus 25 0 species 1284 1710 1 Cellulosimicrobium cellulans no rank 1077 2624466 1 0 1 Cellulosimicrobium sp. TH-20 species 1077 1980001 0 1 0 3 Isoptericola genus 52 254250 2744 0 Isoptericola variabilis 1 139208 946 species species 372663 1746 1 Isoptericola dokdonensis 0 1 0 9 Intrasporangiaceae 57 family 5559 85021 Arsenicicoccus 2 1928 267408 53 genus 0 1 1 2663846 1875 no rank 0 0 1658671 1875 species Arsenicicoccus sp. oral taxon 190 1 2 Intrasporangium genus 29 907 53357 1 0 0 species 878 53358 1 Intrasporangium calvum 1698 265976 genus 79 Serinicoccus 2 0 1 0 species 1758689 1619 1 Serinicoccus sp. JLT9 0 1 Janibacter 2 53457 969 genus 68 0 857417 901 species Janibacter indicus 1 486 family 85023 37020 48 Microbacteriaceae 1 0 2 genus 337004 752 2 Microcella 1 0 0 species 750 279828 1 Microcella alkaliphila 0 1 447237 1352 genus 1 no rank 2626248 1352 0 0 1 Frondihabitans sp. PAMC 28766 species 1795630 1352 Cryobacterium 3 4046 69578 83 genus 0 1 species 670052 1789 1 Cryobacterium arcticum 0 0 1 no rank 2649013 2174 0 1978566 2174 species Cryobacterium sp. LW097 1 1 0 4 genus 33877 1169 2 Agromyces 0 Agromyces aureus 1 453304 1165 species 1 0 16 genus 110932 2612 2 Leifsonia Leifsonia xyli 1 1575 2596 species 0 0 1 Microbacterium 14 14132 33882 265 genus Microbacterium hominis 1 1456 162426 species 0 0 species 1250 300019 1 Microbacterium paludicola 0 8 7921 2609290 no rank 0 367477 1056 species Microbacterium sp. XT11 1 0 772 1916917 species Microbacterium sp. 1.5R 1 1938334 866 species Microbacterium sp. TPU 3598 1 0 0 816 1696072 species Microbacterium sp. CGR1 1 0 1309 2103230 species Microbacterium sp. str. 'China' 1 1000 1906742 species Microbacterium sp. BH-3-3-3 1 0 0 1 Microbacterium sp. PAMC 28756 species 1121 1795053 0 1 Microbacterium sp. No. 7 species 981 1714373 0 1 Microbacterium aurum species 1430 36805 0 1 Microbacterium testaceum species 1139 2033 species 84292 671 1 Microbacterium chocolatum 0 Cnuibacter 2 1759331 1103 4 genus 0 1 1619308 1099 species Cnuibacter physcomitrellae 1 0 Rathayibacter 3 33886 1329 15 genus 0 1 0 Rathayibacter toxicus 1 518 145458 species 0 33888 796 species Rathayibacter tritici 1 1 genus 220 1434032 0 1 Pontimonas salivibrio species 220 1159327 0 genus 121 2034 2819 4 Curtobacterium 1 0 0 2 no rank 1774 257496 0 1 Curtobacterium sp. MR_MD2014 species 1561023 952 0 822 1905847 species Curtobacterium sp. BH-2-1-1 1 0 1 Curtobacterium pusillum species 924 69373 562 1655488 no rank 3 0 0 clade 562 1655489 3 0 1 Rhodoluna 3 562 529883 genus 3 0 529884 272 species Rhodoluna lacicola 1 Candidatus Rhodoluna planktonica 1 287 535712 species 0 Aurantimicrobium 2 1705353 241 genus 2 0 1 239 708131 species Aurantimicrobium minutum 1 0 0 1 1573 4961 genus 327 Clavibacter 6 0 1 Clavibacter michiganensis 5 4634 28447 1147 species Clavibacter nebraskensis 1 31963 711 subspecies 0 0 Clavibacter capsici 1 975 1874630 subspecies 0 subspecies 994 31964 1 Clavibacter sepedonicus 1 Clavibacter insidiosus subspecies 33014 807 0 2 genus 1236 518733 2 Microterricola 1 0 0 412690 1234 species Microterricola viridarii 1 0 85022 287 family 2 287 43673 13 genus Jonesia 2 0 1 species 274 43674 1 Jonesia denitrificans 0 Frankiales 7 85013 7229 order 33 0 1 7196 74712 96 family Frankiaceae 6 0 1 1 0 genus 105 7100 1854 5 Frankia Frankia alni 1 1859 1697 species 0 0 species 2369 298654 1 Frankia inefficax 0 1 no rank 2009 2632575 Frankia sp. EAN1pec 1 298653 2009 species 0 0 Frankia casuarinae 1 106370 920 species 0 1 2436 1643684 9 order Nakamurellales 4 198 family 85031 2427 3 Nakamurellaceae 1 0 53460 2229 genus 22 Nakamurella 2 0 1 1 Nakamurella multipartita species 2207 53461 0 1 0 5 order 2104 85014 4 Glycomycetales 2099 85034 family 57 Glycomycetaceae 3 0 1 2 Stackebrandtia genus 29 2042 283810 1 0 0 283811 2013 species Stackebrandtia nassauensis 1 0 1 Acidothermales 4 1643683 442 order 6 3 Acidothermaceae family 2 436 85032 1 0 genus 1 28048 434 2 Acidothermus 1 0 0 28049 433 species Acidothermus cellulolyticus 1 0 1 3018 1497346 class 5 Thermoleophilia 5 588673 3013 order 96 Solirubrobacterales 4 0 1 0 1 320583 2917 family 12 Conexibacteraceae 3 1 0 71 genus 191494 2905 2 Conexibacter 1 Conexibacter woesei species 191495 2834 0 7 Acidimicrobiia 4 class 84992 1449 1 0 44 order 1445 84993 6 Acidimicrobiales 1 0 0 family 2448023 1042 2 2 Ilumatobacter genus 11 682522 1042 1 0 0 species 467094 1031 1 Ilumatobacter coccineus 0 1 84994 359 family 18 Acidimicrobiaceae 3 0 1 341 53634 1 genus Acidimicrobium 2 0 1 Acidimicrobium ferrooxidans species 53635 340 142 1798711 70102 clade 0 142 Cyanobacteria 11 phylum 1117 70102 1 0 0 1 no rank 255 1983111 0 255 718217 species cyanobacterium endosymbiont of Epithemia turgida 1 2 order 1890505 491 0 2 family 491 1890528 0 4 genus 491 54298 2 Chroococcidiopsis 1 0 0 species 54299 487 1 Chroococcidiopsis thermalis 0 1 Nostocales 32 1161 14884 order 40 1 0 17 Nostocaceae 12 family 8557 1162 0 2 genus 888 264688 264691 482 species Trichormus variabilis 1 0 Trichormus azollae 1 406 1164 species 0 1992 1163 genus 3 Anabaena 4 0 1 0 2 no rank 2619674 1417 0 1 Anabaena sp. 90 species 46234 946 0 471 1647413 species Anabaena sp. WA102 1 1 Anabaena cylindrica species 572 1165 0 0 1 Nostoc 10 1177 5665 genus 27 species 1096 1306274 1 Nostoc flagelliforme 0 0 species 272131 815 1 Nostoc punctiforme 0 7 2593658 3727 no rank 0 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1 557 1618022 species 0 species 354 317936 1 Nostoc sp. PCC 7107 1 Nostoc sp. NIES-3756 species 1751286 561 0 0 1 Nostoc sp. PCC 7524 species 654 28072 species 474 1869241 1 Nostoc sp. CENA543 0 1261031 643 species Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1 0 species 484 103690 1 Nostoc sp. PCC 7120 0 0 no rank 1219117 683 1 0 species 1940762 683 1 Nostocales cyanobacterium HT-58-2 1892263 424 family 2 0 1 0 genus 2 424 1190 2 Fischerella 422 494603 no rank 1 0 species 1752063 422 1 Fischerella sp. NIES-3754 0 0 1 1006 1185 12 family Rivulariaceae 3 genus 6 994 373984 2 Rivularia 1 0 1 988 2676603 no rank 0 0 1 Rivularia sp. PCC 7116 species 988 373994 0 8 4174 2661849 family 0 1 1186 4174 genus 38 Calothrix 8 0 2619626 3557 no rank 6 1 Calothrix sp. NIES-4071 species 1008 2005469 0 0 species 409 99598 1 Calothrix sp. PCC 7507 0 species 1337936 390 1 Calothrix sp. 336/3 0 498 1954171 species Calothrix sp. NIES-2098 1 0 Calothrix sp. NIES-3974 1 558 2005462 species 694 2005461 species Calothrix sp. NIES-4101 1 0 32054 579 species Calothrix parietina 1 0 0 1 52604 1321 9 order Pleurocapsales 5 1 0 2 Hyellaceae family 4 582 1890500 genus 578 44474 1 0 Pleurocapsa minor 1 54308 578 species 0 1890498 730 family 2 0 2 730 102115 genus 0 1 2642663 302 no rank 0 0 Stanieria sp. NIES-3757 1 1807358 302 species 0 Stanieria cyanosphaera 1 428 102116 species 0 15261 1301283 subclass 41 0 1 Oscillatoriales 19 1150 6516 34 order 1892255 811 2 family Gomontiellaceae 2 0 1 1 genus 241421 809 0 Crinalium epipsammum 1 241425 809 species 0 family 1302 1892252 4 0 1 0 2 Trichodesmium genus 5 1205 624 1 Trichodesmium erythraeum species 619 1206 0 Microcoleus 2 678 44471 genus 4 0 1 0 1 no rank 2642155 674 1 Microcoleus sp. PCC 7113 species 1173027 674 0 family 3 1545 1892251 3 Coleofasciculaceae 1 0 1 0 3 genus 63132 1542 2 Geitlerinema 0 1 no rank 1539 2648775 Geitlerinema sp. PCC 7407 1 1173025 1539 species 0 0 1 1892249 812 family 5 Cyanothecaceae 3 1 0 genus 35 807 43988 2 Cyanothece 0 1 2649277 772 no rank species 395961 772 1 Cyanothece sp. PCC 7425 0 0 1 Oscillatoriaceae 6 1892254 2012 family 15 2 genus 611 1155738 2 Moorea 1 0 Moorea producens 1 609 1155739 species 0 1 0 3 Oscillatoria 1 genus 1158 1386 0 species 118323 745 1 Oscillatoria acuminata 0 species 640 482564 1 Oscillatoria nigro-viridis Chroococcales 22 1118 8745 order 2 0 1 0 1 3321 1890450 family 5 Aphanothecaceae 9 92682 437 no rank 2 0 0 1 Halothece 2 437 76023 13 genus 0 1 no rank 424 2632878 0 Halothece sp. PCC 7418 1 424 65093 species 0 genus 203 1453359 1 0 203 713887 species Candidatus Atelocyanobacterium thalassa 1 1 genus 546 263510 0 0 species 2546360 546 1 0 546 43989 strain Cyanothece sp. ATCC 51142 1 0 2 genus 28070 1153 0 1 species 514 2546356 0 Cyanothece sp. PCC 7424 1 514 65393 strain 639 2546359 species 1 0 0 1 Cyanothece sp. PCC 7822 strain 639 497965 0 2 genus 977 2546365 0 2 977 2546366 species strain 395962 454 1 Cyanothece sp. PCC 8802 0 0 1 Cyanothece sp. PCC 8801 strain 523 41431 1 0 family 11 2484 1890464 7 Chroococcaceae 1 0 3 Geminocystis genus 5 669357 1559 0 no rank 1554 2625037 2 Geminocystis sp. NIES-3708 1 932 1615909 species 0 1 Geminocystis sp. NIES-3709 species 622 1617448 0 1 0 4 genus 102231 461 2 Gloeocapsa 0 no rank 457 2623012 1 0 1 Gloeocapsa sp. PCC 7428 species 1173026 457 1 268175 453 genus 0 0 1 no rank 453 2648896 0 1 Chondrocystis sp. NIES-4102 species 2005460 453 1 0 family 11 1764 1890449 4 Microcystaceae 0 1 Microcystis 3 1753 1125 27 genus 2643300 716 no rank 1 0 1 Microcystis sp. MC19 species 1967666 716 0 0 species 1010 1126 1 Microcystis aeruginosa 0 1 1890452 1174 family 102234 1174 genus 1 0 species 1174 379064 1 Cyanobacterium aponinum 0 0 1 Gloeobacteria 6 2965 307596 54 class 0 1 307595 2911 42 order Gloeobacterales 5 1890422 2869 family 37 Gloeobacteraceae 4 0 1 1 0 genus 22 2832 33071 3 Gloeobacter 1 Gloeobacter violaceus species 1806 33072 0 1 Gloeobacter kilaueensis species 1416614 1004 0 1 0 order 345 1890424 34914 54 Synechococcales 2 family 2303730 825 0 0 1 170610 825 1 genus Halomicronema 2 1 Halomicronema hongdechloris species 1209493 824 0 0 1 Synechococcaceae 33 25052 1890426 135 family 0 1 Dactylococcopsis 2 393 13034 genus 13 0 380 292566 species Dactylococcopsis salina 1 0 genus 146785 454 1 0 1 Thermosynechococcus elongatus species 146786 454 1 0 3 Cyanobium 36 genus 167375 5792 0 1 Cyanobium gracile species 2716 59930 1 2627006 3040 no rank 0 species 3040 1851505 1 Cyanobium sp. NIES-981 0 Synechococcus 26 1129 18278 genus 272 0 1 808 32046 species Synechococcus elongatus 1 0 23 no rank 16821 2626047 0 species 351 64471 1 Synechococcus sp. CC9311 0 0 species 750 1350461 1 Synechococcus sp. UTEX 2973 species 1335 321332 1 Synechococcus sp. JA-2-3B'a(2-13) 0 1 Synechococcus sp. KORDI-49 species 585423 880 0 0 1916956 1104 species Synechococcus sp. SynAce01 1 0 species 921 29410 1 Synechococcus sp. WH 8103 Synechococcus sp. KORDI-52 1 585425 782 species 0 0 Synechococcus sp. PCC 8807 1 556 195248 species Synechococcus sp. WH 8102 1 919 84588 species 0 0 1 Synechococcus sp. PCC 73109 species 374982 321 species 308 316279 1 Synechococcus sp. CC9902 0 0 species 166314 908 1 Synechococcus sp. WH 8109 species 195498 310 1 Synechococcus sp. PCC 7117 0 species 321327 1956 1 Synechococcus sp. JA-3-3Ab 0 Synechococcus sp. PCC 7002 1 428 32049 species 0 species 402 195253 1 Synechococcus sp. PCC 6312 0 0 Synechococcus sp. PCC 7502 1 1173263 391 species species 1198 316278 1 Synechococcus sp. RCC307 0 0 species 1827144 346 1 Synechococcus sp. NIES-970 0 Synechococcus sp. KORDI-100 1 1280380 511 species species 1095 110662 1 Synechococcus sp. CC9605 0 0 1 Synechococcus sp. WH 7803 species 629 32051 1 Synechococcus sp. PCC 7003 species 374981 420 0 0 Synechococcus lividus 1 33070 377 species 0 4 1890428 1626 family 1 0 4 Synechocystis genus 41 1626 1142 0 2640012 1585 no rank 3 0 545 1148 species Synechocystis sp. PCC 6803 1 0 species 1147 495 1 Synechocystis sp. PCC 6714 Synechocystis sp. IPPAS B-1465 1 2116702 545 species 0 0 293 1890436 family 2 5 genus 1152 293 2 Pseudanabaena 1 0 1 288 2593292 no rank 0 0 species 288 82654 1 Pseudanabaena sp. PCC 7367 0 1 Leptolyngbyaceae 6 1890438 4032 family 12 1 0 genus 22 47251 4020 5 Leptolyngbya species 1184 713 1 Leptolyngbya boryana 0 3 2650499 3285 no rank 0 species 2165 1080068 1 Leptolyngbya sp. O-77 0 0 1 Leptolyngbya sp. PCC 7376 species 111781 439 species 1752064 681 1 Leptolyngbya sp. NIES-3755 0 family 1213 2109 4 0 Prochlorococcus 4 2109 1218 1 genus 0 1 Prochlorococcus marinus 1 1219 1742 species 0 0 2 366 2627481 no rank 0 Prochlorococcus sp. MIT 0801 1 1501269 169 species 0 species 197 1501268 1 Prochlorococcus sp. MIT 0604 0 1890429 632 family 2 155977 632 4 genus Acaryochloris 2 0 1 0 species 628 155978 1 Acaryochloris marina 0 1859062 513 no rank 2 2 Thermobaculum 70 genus 262406 513 1 0 443 166501 species Thermobaculum terrenum 1 0 phylum 1297 45334 36 0 0 1 45334 188787 271 class Deinococci 36 3 1483 2762275 order 0 10 family 332247 1483 3 Trueperaceae 1 0 genus 21 1473 332248 2 Truepera 1 0 0 species 1452 332249 1 Truepera radiovictrix 15 Deinococcales order 248 27474 118964 1 0 14 Deinococcaceae family 125 183710 27226 1 0 0 1 Deinococcus 13 1298 27101 genus 353 Deinococcus geothermalis 1 1570 68909 species 0 Deinococcus actinosclerus 1 2325 1768108 species 0 0 Deinococcus peraridilitoris 1 432329 1425 species Deinococcus proteolyticus 1 2438 55148 species 0 0 309887 1931 species Deinococcus maricopensis 1 Deinococcus swuensis 1 3145 1182571 species 0 0 1 Deinococcus deserti species 1622 310783 0 species 1182568 2267 1 Deinococcus puniceus species 2215 1299 1 Deinococcus radiodurans 0 0 2248 1309411 species Deinococcus soli Cha et al. 2016 1 1 Deinococcus gobiensis species 3228 502394 0 1 2334 2623546 no rank 0 1 Deinococcus sp. NW-56 species 2080419 2334 0 0 1 Thermales 17 68933 16106 order 227 family 123 188786 15879 16 Thermaceae 1 0 1 0 2 Oceanithermus genus 26 2371 208447 species 2345 187137 1 Oceanithermus profundus 0 0 1 Meiothermus 3 65551 3199 genus 24 2046 277 species Meiothermus ruber 1 0 0 species 1129 52022 1 Meiothermus silvanus 9222 270 263 genus Thermus 8 0 1 no rank 960 2619321 1 0 0 1111069 960 species Thermus sp. CCB_US3_UF1 1 37636 837 species Thermus scotoductus 1 0 1159 456163 species Thermus parvatiensis 1 0 612 56956 species Thermus brockianus 1 0 0 1 Thermus oshimai species 1631 56957 0 Thermus aquaticus 1 1457 271 species 0 274 2303 species Thermus thermophilus 1 Marinithermus 2 186191 964 genus 15 0 1 species 186192 949 1 Marinithermus hydrothermalis 0 1 0 724 Firmicutes phylum 496 1239 11155263 0 1 Limnochordia 5 2897 1676648 class 41 0 1 Limnochordales 4 2856 1676649 order 33 1 0 3 Limnochordaceae family 42 2823 1676650 2 Limnochorda 139 genus 1676651 2781 1 0 0 1555112 2642 species Limnochorda pilosa 1 Negativicutes 30 909932 100710 class 101 0 1 1 0 order 108 38354 909929 13 Selenomonadales 9 family 4588 1843490 4 Sporomusaceae 1 0 1 0 3 Pelosinus genus 27 4579 365348 1 Pelosinus fermentans species 365349 2422 0 1 2629460 2130 no rank 0 species 484770 2130 1 Pelosinus sp. UFO1 0 1 0 8 Selenomonadaceae family 549 1843491 33658 Selenomonas 6 970 29745 genus 206 0 1 0 Selenomonas ruminantium 1 971 9590 species 3 14158 2637378 no rank 0 1 Selenomonas sp. oral taxon 920 species 1884263 3445 0 0 Selenomonas sp. oral taxon 136 1 713030 5485 species Selenomonas sp. oral taxon 478 1 5228 712538 species 0 0 1 Selenomonas sputigena species 69823 5791 0 158846 3364 genus 1 Megamonas hypermegale 1 3364 158847 species 0 Acidaminococcales 5 34132 1843488 order 51 0 1 0 1 909930 34081 family 58 Acidaminococcaceae 4 genus 64 34023 904 3 Acidaminococcus 1 0 0 species 11110 905 1 Acidaminococcus fermentans 1 Acidaminococcus intestini species 187327 22849 0 order 2881 28123 1843489 11 Veillonellales 1 0 31977 25242 2434 family Veillonellaceae 10 0 1 39948 1642 29 genus Dialister 2 0 1 0 1 Dialister pneumosintes species 39950 1613 3 Veillonella genus 36 5361 29465 1 0 species 248315 2324 1 Veillonella rodentium 0 0 1 Veillonella parvula species 3001 29466 2 Megasphaera genus 1343 13832 906 1 0 0 Megasphaera elsdenii 1 12489 907 species genus 13 1973 909928 2 Negativicoccus 1 0 Negativicoccus massiliensis 1 1960 1702287 species 0 186801 10123731 490 class Clostridia 223 0 1 53433 5736 order 10 0 0 1 Halanaerobiaceae 6 972 3815 6 family Halothermothrix 2 32636 1549 5 genus 0 1 0 Halothermothrix orenii 1 31909 1544 species 1 0 3 Halanaerobium 6 genus 2260 2330 0 1192 2331 species Halanaerobium praevalens 1 0 species 656519 1062 1 Halanaerobium hydrogeniformans 0 1921 53434 family 4 2 Acetohalobium genus 1 1109 28186 1 0 0 28187 1108 species Acetohalobium arabaticum 1 Halobacteroides 2 42417 812 3 genus 0 1 0 1 Halobacteroides halobius species 809 42422 1 0 38 Thermoanaerobacterales 45 order 68295 31298 1 0 13 Thermoanaerobacterales Family III. Incertae Sedis family 35 543371 14426 0 1 Thermoanaerobacterium 3 4697 28895 genus 18 0 1517 2697 species Thermoanaerobacterium thermosaccharolyticum 1 0 29329 1982 species Thermoanaerobacterium xylanolyticum 1 193 genus 9694 44000 9 Caldicellulosiruptor 1 0 0 413888 1211 species Caldicellulosiruptor hydrothermalis 1 0 species 1337 413889 1 Caldicellulosiruptor kronotskyensis species 1261 717609 1 Caldicellulosiruptor obsidiansis 0 0 Caldicellulosiruptor bescii 1 1038 31899 species 1 Caldicellulosiruptor kristjanssonii species 1141 52765 0 0 1 Caldicellulosiruptor owensensis species 1239 55205 52766 1078 species Caldicellulosiruptor lactoaceticus 1 0 1 Caldicellulosiruptor saccharolyticus species 44001 1196 0 Thermoanaerobacteraceae 19 14732 186814 130 family 0 1 0 4 no rank 3493 42857 1 0 2 Ammonifex 7 genus 42837 1344 Ammonifex degensii 1 42838 1337 species 0 0 1 44260 2149 7 genus Moorella 2 species 2142 1525 1 Moorella thermoacetica 0 129957 1152 genus 1 0 0 1 Carboxydothermus hydrogenoformans species 1152 129958 2 Thermacetogenium genus 9 140458 993 1 0 Thermacetogenium phaeum 1 85874 984 species 0 Caldanaerobacter 2 1445 249529 31 genus 0 1 species 1414 911092 1 Caldanaerobacter subterraneus 0 1 0 476 genus 7519 1754 9 Thermoanaerobacter 0 583357 794 species Thermoanaerobacter mathranii 1 Thermoanaerobacter italicus 1 757 108150 species 0 0 1 Thermoanaerobacter wiegelii species 950 46354 0 species 496866 908 1 Thermoanaerobacter pseudethanolicus 0 species 29323 908 1 Thermoanaerobacter brockii no rank 2636821 1802 2 0 0 1 Thermoanaerobacter sp. X514 species 399726 895 0 1 Thermoanaerobacter sp. X513 species 907 573062 Thermoanaerobacter kivui 1 2325 924 species 0 2 family 482 227387 0 4 genus 227388 482 2 Thermodesulfobium 1 0 1 Thermodesulfobium narugense species 184064 478 0 1 0 3 Thermoanaerobacterales Family IV. Incertae Sedis 12 family 543372 1613 4 genus 1601 252965 2 Mahella 1 0 Mahella australiensis 1 1597 252966 species 0 order 8 817 485256 3 Natranaerobiales 1 0 family 485255 809 2 0 genus 27 809 375928 2 Natranaerobius 1 0 0 species 782 375929 1 Natranaerobius thermophilus 10083047 186802 order 27184 Clostridiales 167 0 1 0 1 Symbiobacteriaceae 3 4980 543349 12 family 2 Symbiobacterium genus 19 2733 4968 1 0 Symbiobacterium thermophilum 1 2734 4949 species 0 family 2304686 62509 12 0 no rank 36238 2305130 1 0 1 Ruminiclostridium sp. KB18 species 36238 1834198 0 1 0 2 Ruminiclostridium genus 453 1508657 5277 1521 4824 species [Clostridium] cellulolyticum 1 0 0 1 1637257 3857 genus 5 Mageeibacillus 2 1 Mageeibacillus indolicus species 884684 3852 0 1 genus 3566 2304691 0 1 [Clostridium] stercorarium species 3566 1510 0 0 1 genus 2304693 3513 species 84032 3513 1 [Clostridium] thermosuccinogenes 0 0 genus 8839 2304692 3 1515 3244 species Ruminiclostridium thermocellum 1 0 0 species 1677857 2085 1 Herbivorax saccincola 0 3510 288965 species [Clostridium] clariflavum 1 Fastidiosipila 2 236752 1219 genus 1 0 1 species 1218 236753 1 Fastidiosipila sanguinis 0 990719 55935 48 family Christensenellaceae 3 0 1 Christensenella 2 990721 55887 genus 835 0 1 species 1805714 55052 1 Christensenella massiliensis 0 0 1 33807 186806 family 40 Eubacteriaceae 5 1730 31146 1389 genus Eubacterium 2 0 1 0 1 Eubacterium limosum species 29757 1736 2 Acetobacterium 10 genus 2621 33951 1 0 0 species 2611 33952 1 Acetobacterium woodii 27 Lachnospiraceae family 3695 3848040 186803 1 0 4 genus 11580 1663717 2 Herbinix 1 0 1 Herbinix luporum species 1679721 11576 0 genus 2719231 48385 1 0 0 1 [Clostridium] saccharolyticum species 48385 84030 1 0 2 Cellulosilyticum genus 68 6001 698776 Cellulosilyticum lentocellum 1 29360 5933 species 0 1 0 genus 180 572511 246800 3 Blautia species 1322 149313 1 Blautia hansenii 0 1 no rank 97307 2648079 0 0 97307 1796616 species Blautia sp. YL58 1 1 28050 222940 genus 0 39485 222940 species [Eubacterium] eligens 1 0 2569097 268865 genus 1 0 0 species 268865 39488 1 [Eubacterium] hallii 0 1 209381 1506553 986 genus Lachnoclostridium 4 1871021 102876 species Lachnoclostridium phocaeense 1 0 species 17396 66219 1 Lachnoclostridium phytofermentans 0 0 1 no rank 88123 2608895 0 Lachnoclostridium sp. YL32 1 1834196 88123 species Roseburia 2 841 947889 genus 72 0 1 1 Roseburia hominis species 947817 301301 0 genus 125 386041 207244 2 Anaerostipes 1 0 649756 385916 species Anaerostipes hadrus 1 0 0 1 830 42416 29 genus Butyrivibrio 3 0 43305 20936 species Butyrivibrio proteoclasticus 1 species 185008 21451 1 Butyrivibrio hungatei 0 genus 27 2039240 10409 2 Anaerotignum 1 0 Anaerotignum propionicum 1 28446 10382 species 0 186928 1189362 no rank 2 0 1 [Eubacterium] rectale species 1146952 39491 0 0 1 Lachnospiraceae bacterium oral taxon 500 species 712991 42410 0 2719313 254276 genus 1 0 [Clostridium] bolteae 1 254276 208479 species 1 0 3 Oscillospiraceae family 22 29806 216572 84 genus 459786 29784 2 Oscillibacter 1 0 species 29700 351091 1 Oscillibacter valericigenes 0 no rank 538999 327504 10 0 0 2717089 238011 genus 1 Mordavella sp. Marseille-P3756 1 238011 2086584 species 0 2 Intestinimonas 922 genus 78809 1392389 1 0 0 1297617 77887 species Intestinimonas butyriciproducens 1 3 Clostridiales Family XVII. Incertae Sedis 16 family 3679 539000 1 0 1 0 104 genus 73918 3663 2 Thermaerobacter 0 species 73919 3559 1 Thermaerobacter marianensis 4 Clostridiales Family XIII. Incertae Sedis family 37 7005 543314 1 0 0 1 86331 3323 genus 28 Mogibacterium 2 species 3295 114527 1 Mogibacterium diversum 0 0 1 [Eubacterium] sulci species 3645 143393 0 1 4802 31984 family 14 Heliobacteriaceae 3 1 0 genus 24 4788 2697 2 Heliobacterium 0 1 Heliobacterium modesticaldum species 4764 35701 1 0 family 984 31979 167505 41 Clostridiaceae 0 1 154651 1485 1323 genus Clostridium 30 5663 1502 species Clostridium perfringens 1 0 1 Clostridium bornimense species 3023 1216932 0 Clostridium scatologenes 1 2991 1548 species 0 0 1 Clostridium tyrobutyricum species 2077 1519 0 2723 1494 species Clostridium cochlearium 1 2097 1538 species Clostridium ljungdahlii 1 0 Clostridium tetani 1 1513 5212 species 0 1 Clostridium pasteurianum species 1501 4785 0 Clostridium kluyveri 1 4083 1534 species 0 Clostridium beijerinckii 1 5459 1520 species 0 238834 2241 species Clostridium estertheticum 1 0 Clostridium acetobutylicum 1 2234 1488 species 0 0 1542 2036 species Clostridium novyi 1 1 Clostridium butyricum species 1492 5438 0 0 4507 1493 species Clostridium cellulovorans 1 36745 4441 species Clostridium saccharoperbutylacetonicum 1 0 1789 84022 species Clostridium aceticum 1 0 2 51806 2614128 no rank 0 Clostridium sp. BNL1100 1 755731 4322 species 0 species 1042156 47484 1 Clostridium sp. SY8519 0 species 3005 394958 1 Clostridium taeniosporum 0 0 3231 217159 species Clostridium carboxidivorans 1 Clostridium autoethanogenum 1 84023 2053 species 0 Clostridium botulinum 1 1491 14246 species 0 0 Clostridium sporogenes 1 2121 1509 species species 1497 2139 1 Clostridium formicaceticum 0 species 4656 1561 1 Clostridium baratii 0 0 Clostridium argentinense 1 29341 2911 species Clostridium saccharobutylicum 1 3577 169679 species 0 species 46867 2784 1 Clostridium chauvoei 0 0 429 1981033 genus Mordavella 1 0 1 49082 2918 genus 52 Candidatus Arthromitus 4 no rank 2638829 2866 3 0 Candidatus Arthromitus sp. SFB-mouse-NL 1 1508644 868 species 0 Candidatus Arthromitus sp. SFB-mouse 1 871 49118 species 0 1041504 1127 species Candidatus Arthromitus sp. SFB-rat-Yit 1 0 3 Alkaliphilus genus 9 3447 114627 1 0 0 461876 1602 species Alkaliphilus oremlandii 1 species 208226 1836 1 Alkaliphilus metalliredigens 0 36 genus 5076 390805 2 Geosporobacter 1 0 1 Geosporobacter ferrireducens species 1424294 5040 0 Ruminococcaceae 13 541000 5295097 family 734 0 1 1 0 genus 123 62250 1263 3 Ruminococcus Ruminococcus bicirculans 1 1160721 45593 species 0 0 1264 16534 species Ruminococcus albus 1 196 genus 140006 946234 2 Flavonifractor 1 0 0 1 Flavonifractor plautii species 292800 139810 1 13244 2305133 no rank 0 0 1 Ruminococcaceae bacterium CPB6 species 1572656 13244 253238 17523 genus 55 Ethanoligenens 2 0 1 0 253239 17468 species Ethanoligenens harbinense 1 552397 5659 no rank 1 0 0 5659 29343 species [Clostridium] cellulosi 1 0 1 216851 5055678 genus 2562 Faecalibacterium 2 0 species 853 5053116 1 Faecalibacterium prausnitzii 0 genus 3 1890281 1 Herbivorax 1 0 9 family 68298 1908 5 Syntrophomonadaceae 0 1 Syntrophothermus 2 129001 803 genus 2 species 86170 801 1 Syntrophothermus lipocalidus 0 1096 862 genus 3 Syntrophomonas 2 0 1 0 species 1093 863 1 Syntrophomonas wolfei 1 0 family 132 45709 186807 29 Peptococcaceae 87 genus 36853 9682 5 Desulfitobacterium 1 0 0 1919 142877 species Desulfitobacterium metallireducens 1 0 species 233055 1794 1 Desulfitobacterium dichloroeliminans 0 49338 3637 species Desulfitobacterium hafniense 1 0 species 36854 2245 1 Desulfitobacterium dehalogenans 1 0 2 Thermincola 18 genus 1585 278993 0 1567 863643 species Thermincola potens 1 Dehalobacter 4 9076 56112 genus 50 0 1 0 Dehalobacter restrictus 1 55583 2770 species 0 2 no rank 6256 2635733 1 Dehalobacter sp. DCA species 3007 1147129 0 Dehalobacter sp. CF 1 3249 1131462 species 0 0 2282742 1622 genus 1 1 Desulfotomaculum acetoxidans species 58138 1622 0 0 1 5593 79206 genus 92 Desulfosporosinus 4 0 1941 79209 species Desulfosporosinus meridiei 1 0 1 Desulfosporosinus acidiphilus species 1772 885581 0 species 1788 1563 1 Desulfosporosinus orientis 0 1 Candidatus Desulforudis 2 471826 1882 genus 32 species 471827 1850 1 Candidatus Desulforudis audaxviator 0 0 1 3095 51196 2 genus Syntrophobotulus 2 51197 3093 species Syntrophobotulus glycolicus 1 0 5 genus 51514 3425 2 Dehalobacterium 1 0 0 1 Dehalobacterium formicoaceticum species 3420 51515 5 Desulfotomaculum genus 78 7343 1562 1 0 0 1833852 2147 species Desulfotomaculum ferrireducens 1 Desulfotomaculum reducens 1 1334 59610 species 0 1 Desulfotomaculum ruminis species 2366 1564 0 0 1418 1565 species Desulfotomaculum nigrificans 1 0 1 2274 2282740 genus 102134 2274 species Desulfotomaculum gibsoniae 1 0 178261 186804 546 family Peptostreptococcaceae 12 0 1 Clostridioides 2 165561 1870884 genus 292 0 1 0 165269 1496 species Clostridioides difficile 1 0 1 Acetoanaerobium 2 186831 2208 genus 7 species 1511 2201 1 Acetoanaerobium sticklandii 0 0 1 2622 1481960 14 genus Peptoclostridium 2 0 Peptoclostridium acidaminophilum 1 1731 2608 species 15 genus 3576 1849828 2 Paeniclostridium 1 0 0 1505 3561 species Paeniclostridium sordellii 1 0 1 Filifactor 2 2037 44259 genus 6 1 Filifactor alocis species 143361 2031 0 1711 1411023 no rank 1 0 0 1711 2081703 species Peptostreptococcaceae bacterium oral taxon 929 1 0 2343 2770089 order 4 2 family 2770093 1193 0 1 0 genus 36 291988 1193 2 Thermosediminibacter 291990 1157 species Thermosediminibacter oceani 1 0 0 2 1150 2770092 family 1 0 2 Tepidanaerobacter 1 genus 499228 1150 1 Tepidanaerobacter acetatoxydans species 499229 1149 0 1 0 class 5 1737404 26672 19 Tissierellia Tissierellales 16 25525 1737405 1277 order 0 1 22666 1570339 5887 family Peptoniphilaceae 12 0 1 2 Parvimonas genus 35 1808 543311 1 0 1 Parvimonas micra species 1773 33033 0 8403 1161127 genus 5 Murdochiella 2 0 1 0 Murdochiella vaginalis 1 8398 1852373 species 0 1 2280 150022 genus 18 Finegoldia 2 1 Finegoldia magna species 2262 1260 0 1 0 3 Anaerococcus 10 genus 2600 165779 species 33034 1365 1 Anaerococcus prevotii 0 1870984 1225 species Anaerococcus mediterraneensis 1 0 2 Peptoniphilus genus 6 162289 1688 1 0 1 1682 2637196 no rank 0 0 Peptoniphilus sp. ING2-D1G 1 1682 1912856 species 0 1 Gottschalkiaceae 3 1582 2042895 family 7 1 0 2 Gottschalkia 16 genus 1505664 1575 0 species 1559 1556 1 Gottschalkia acidurici 0 no rank 1737407 1142 2 0 1 1142 1582879 32 genus Ezakiella 2 species 1110 1852374 1 Ezakiella massiliensis 0 1 892 84086 no rank 0 243899 892 species endosymbiont 'TC1' of Trimyema compressum 1 0 49138 526524 class 12 Erysipelotrichia 11 0 1 10 Erysipelotrichales order 17 526525 49126 1 0 0 1 Erysipelotrichaceae 9 128827 49109 family 162 0 1 Turicibacter 2 7755 191303 48 genus 1 no rank 7707 2638206 0 Turicibacter sp. H121 1 1712675 7707 species 0 0 1 no rank 27797 544447 27797 1834207 species Erysipelotrichaceae bacterium I46 1 0 3 Erysipelothrix genus 30 3069 1647 1 0 1648 1430 species Erysipelothrix rhusiopathiae 1 0 0 1514105 1609 species Erysipelothrix larvae 1 Faecalibaculum 2 1729679 10326 genus 83 0 1 10243 1702221 species Faecalibaculum rodentium 1 0 Bacilli 432 848695 91061 class 380 0 1 Bacillales 268 1385 407811 998 order 0 1 0 1 42167 90964 family 5575 Staphylococcaceae 42 0 1 Auricoccucs 2 662 2005363 genus 29 1849491 633 species Auricoccus indicus 1 0 3932 69965 12 genus Macrococcus 4 0 1 0 species 1855823 796 1 Macrococcus canis no rank 855 2619255 1 0 0 855 1898474 species Macrococcus sp. IME1552 1 1 Macrococcus caseolyticus species 2269 69966 0 0 1 30566 1279 1669 genus Staphylococcus 33 1283 619 species Staphylococcus haemolyticus 1 0 0 214473 665 species Staphylococcus nepalensis 1 species 806 29382 1 Staphylococcus cohnii 0 1 Staphylococcus schleiferi species 857 1295 0 0 1 Staphylococcus succinus species 806 61015 species 788 985002 1 Staphylococcus argenteus 0 0 species 70255 928 1 Staphylococcus condimenti 0 species 576 155085 1 Staphylococcus lutrae 0 species 46127 654 1 Staphylococcus felis species 639 1290 1 Staphylococcus hominis 0 0 species 1477 45972 1 Staphylococcus pasteuri species 29384 698 1 Staphylococcus kloosii 0 species 1513 283734 1 Staphylococcus pseudintermedius 0 1 Staphylococcus epidermidis species 1282 1079 0 0 species 4358 1280 1 Staphylococcus aureus 0 821 308354 species Staphylococcus simiae 1 no rank 91994 607 1 0 Staphylococcus sp. AntiMn-1 1 607 1715860 species 0 1 Staphylococcus carnosus species 698 1281 0 0 703 1292 species Staphylococcus warneri 1 0 Staphylococcus capitis 1 680 29388 species 1 Staphylococcus stepanovicii species 643214 697 0 0 1 Staphylococcus simulans species 1286 939 species 709 70258 1 Staphylococcus piscifermentans 0 0 species 668 246432 1 Staphylococcus equorum 1 Staphylococcus muscae species 1294 556 0 0 Staphylococcus agnetis 1 570 985762 species 1 Staphylococcus sciuri species 1100 1296 0 species 1284 575 1 Staphylococcus hyicus 0 0 28035 675 species Staphylococcus lugdunensis 1 species 643 29385 1 Staphylococcus saprophyticus 0 1132 1288 species Staphylococcus xylosus 1 0 species 661 170573 1 Staphylococcus pettenkoferi 0 genus 26 1432 45669 2 Salinicoccus 1 0 Salinicoccus halodurans 1 407035 1406 species 0 0 1 186823 10674 77 family Alicyclobacillaceae 9 0 1 5576 432330 22 genus Tumebacillus 3 1 Tumebacillus algifaecis species 1214604 1776 0 0 Tumebacillus avium 1 3778 1903704 species 1 0 2 Alicyclobacillus 30 genus 2821 29330 species 2791 405212 1 Alicyclobacillus acidocaldarius 0 2200 1129704 genus 90 Kyrpidia 3 0 1 0 1 Kyrpidia tusciae species 33943 1179 931 2055160 species Kyrpidia sp. EA-1 1 0 0 1 186822 138769 family 395 Paenibacillaceae 46 0 3 no rank 85151 3662 3 Aneurinibacillus genus 8 3662 55079 1 0 1 1547 2642329 no rank 0 1 Aneurinibacillus sp. XH2 species 1450761 1547 0 Aneurinibacillus soli 1 1500254 2107 species 0 genus 32 6902 55080 4 Brevibacillus 1 0 0 1 Brevibacillus laterosporus species 1465 2418 0 species 54913 1407 1 Brevibacillus formosus Brevibacillus brevis 1 3045 1393 species 0 1 0 2 Thermobacillus genus 5 76632 5495 1 Thermobacillus composti species 377615 5490 0 Paenibacillus 36 44249 122315 990 genus 0 1 0 1 species group 2044880 4164 0 species 483937 4164 1 Paenibacillus riograndensis 0 species 5320 160799 1 Paenibacillus borealis 1 Paenibacillus beijingensis species 3269 1126833 0 0 species 5028 414771 1 Paenibacillus donghaensis 1 Paenibacillus stellifer species 4501 169760 0 0 Paenibacillus bovis 1 1616788 3784 species 13 185978 45000 no rank 0 0 1 Paenibacillus sp. 32O-W species 2508 1695218 1 Paenibacillus sp. FSL R7-0273 species 5943 1536772 0 1 Paenibacillus sp. FSL H7-0357 species 3814 1536774 0 0 324057 3764 species Paenibacillus sp. JDR-2 1 species 1996 1536770 1 Paenibacillus sp. FSL R5-0345 0 Paenibacillus sp. FSL H7-0737 1 2168 1536775 species 0 1 Paenibacillus sp. FSL R5-0912 species 1536771 5147 0 species 1536773 5251 1 Paenibacillus sp. FSL R7-0331 0 1566358 1166 species Paenibacillus sp. IHBB 10380 1 0 0 species 1536769 5475 1 Paenibacillus sp. FSL P4-0081 0 Paenibacillus sp. Y412MC10 1 3271 481743 species 0 species 2557 1870819 1 Paenibacillus sp. BIHB4019 0 1940 2069255 species Paenibacillus sp. lzh-N1 1 0 Paenibacillus odorifer 1 1800 189426 species 0 1 Paenibacillus terrae species 2221 159743 0 Paenibacillus ihbetae 1 1870820 3538 species 1 Paenibacillus larvae species 2274 1464 0 1 Paenibacillus yonginensis species 3063 1462996 0 0 59893 2153 species Paenibacillus peoriae 1 1 Paenibacillus naphthalenovorans species 162209 2374 0 0 Paenibacillus polymyxa 1 1406 7079 species 0 Paenibacillus mucilaginosus 1 6170 61624 species 1 Paenibacillus crassostreae species 1763538 1187 0 0 3507 189425 species Paenibacillus graminis 1 0 1780 172713 species Paenibacillus kribbensis 1 0 1 Paenibacillus durus species 5537 44251 0 Paenibacillus sabinae 1 3037 365617 species 2643 528191 species Paenibacillus xylanexedens 1 0 species 1178515 1896 1 Paenibacillus swuensis 0 family 39 186820 8757 9 Listeriaceae 1 0 6 Listeria 63 genus 7788 1637 1 0 0 species 991 1643 1 Listeria welshimeri 1 Listeria monocytogenes species 1639 3250 0 0 1 Listeria ivanovii species 1469 1638 1 Listeria seeligeri species 1039 1640 0 0 1 Listeria innocua species 1642 976 0 1 930 2755 genus 2 Brochothrix 2 928 2756 species Brochothrix thermosphacta 1 0 Bacillaceae 119 186817 169457 1006 family 0 1 genus 1055323 1308 1 0 33936 1308 species Aeribacillus pallidus 1 0 genus 6037 2675234 5 0 species 1175 79885 1 Bacillus pseudofirmus 0 species 1097 199441 1 Bacillus krulwichiae 0 Bacillus clausii 1 1554 79880 species 0 0 1068 300825 species Bacillus lehensis 1 1 Bacillus halodurans species 86665 1143 0 0 1 Parageobacillus 2 1906945 1511 22 genus 1 Parageobacillus thermoglucosidasius species 1426 1489 0 5 Lysinibacillus 138 genus 6502 400634 1 0 Lysinibacillus fusiformis 1 1140 28031 species 0 0 2950 1421 species Lysinibacillus sphaericus 1 1 2636778 1068 no rank 0 1068 2072025 species Lysinibacillus sp. YS11 1 0 0 Lysinibacillus varians 1 1145276 1206 species 0 1 1386 106992 genus 8139 Bacillus 58 0 Bacillus smithii 1 1479 974 species Bacillus flexus 1 1020 86664 species 0 species 4759 1408 1 Bacillus pumilus 0 1 Bacillus glycinifermentans species 1664069 2134 0 0 species group 22601 653685 9 3 6571 1938374 species subgroup 0 0 492670 2403 species Bacillus velezensis 1 species 659243 1093 1 Bacillus siamensis 0 0 1 Bacillus amyloliquefaciens species 3075 1390 species 8394 1423 1 Bacillus subtilis 0 1 Bacillus sonorensis species 1945 119858 0 72361 345 species Bacillus vallismortis 1 0 0 1402 1927 species Bacillus licheniformis 1 1452 1667 species Bacillus atrophaeus 1 0 Bacillus paralicheniformis 1 1648923 1752 species 0 79883 1181 species Bacillus horikoshii 1 0 0 species group 26680 86661 10 1 Bacillus thuringiensis species 1428 8041 0 0 3646 2750818 no rank 3 Bacillus sp. FDAARGOS_235 1 1250 1839798 species 0 2053832 1664 species Bacillus sp. HBCD-sjtu 1 0 0 species 1892404 732 1 Bacillus sp. ABP14 Bacillus cytotoxicus 1 1034 580165 species 0 0 Bacillus toyonensis 1 827 155322 species species 781 658666 1 Bacillus bombysepticus 0 species 8201 1396 1 Bacillus cereus 0 Bacillus mycoides 1 1405 3212 species 0 0 1392 938 species Bacillus anthracis 1 0 1012 1413 species Bacillus cellulosilyticus 1 2540 561879 species Bacillus safensis 1 0 species 632773 1575 1 Bacillus beveridgei 0 0 79881 150 species Bacillus gibsonii 1 1178537 996 species Bacillus xiamenensis 1 0 0 1 Bacillus aryabhattai species 412384 1276 1 species group 1240 1792192 0 1 Bacillus altitudinis species 293387 1240 0 0 Bacillus methanolicus 1 1226 1471 species species 2973 1404 1 Bacillus megaterium 0 0 species 324767 2184 1 Bacillus infantis 0 Bacillus endophyticus 1 1609 135735 species no rank 16197 185979 19 0 0 1 Bacillus sp. 275 species 717 1941347 1 Bacillus sp. (in: Bacteria) species 1409 319 0 0 938 1837130 species Bacillus sp. FJAT-14266 1 0 Bacillus sp. OxB-1 1 98228 1719 species species 1574141 380 1 Bacillus sp. YP1 0 1 Bacillus sp. H15-1 species 1345 1856406 0 564 1127744 species Bacillus sp. JS 1 0 1 Bacillus sp. SDLI1 species 1774743 1094 0 0 1 Bacillus sp. IHB B 7164 species 1271 1827146 species 344 1628753 1 Bacillus sp. LM 4-2 0 Bacillus sp. MD-5 1 636 2009331 species 0 0 1265 756828 species Bacillus sp. WP8 1 0 species 666686 1376 1 Bacillus sp. 1NLA3E 0 2026248 1345 species Bacillus sp. 1s-1 1 0 1 Bacillus sp. X1(2014) species 1194 1565991 0 Bacillus sp. Lzh-5 1 130 2049935 species 1 Bacillus sp. SJ-10 species 563169 571 0 250 1570330 species Bacillus sp. BH072 1 0 species 1446792 739 1 Bacillus sp. Pc3 0 1547283 1360 species Bacillus weihaiensis 1 0 Bacillus coagulans 1 1398 3943 species 0 species 1223 33932 1 Bacillus cohnii 0 0 1 genus 351195 1409 0 1 Salimicrobium jeotgali species 1230341 1409 2 Lentibacillus 3 genus 1191 175304 1 0 0 1 Lentibacillus amyloliquefaciens species 1188 1472767 0 1 129337 13535 genus 805 Geobacillus 15 species 1244 1422 1 Geobacillus stearothermophilus 0 0 species 1119 1921421 1 Geobacillus genomosp. 3 4086 2642459 no rank 6 0 1 Geobacillus sp. GHH01 species 1233873 496 0 species 550542 338 1 Geobacillus sp. Y412MC52 0 635 691437 species Geobacillus sp. C56-T3 1 0 Geobacillus sp. WCH70 1 956 471223 species 0 0 1 Geobacillus sp. Y4.1MC1 species 581103 1282 379 544556 species Geobacillus sp. Y412MC61 1 0 Geobacillus subterraneus 1 129338 908 species 0 1212 33940 species Geobacillus thermodenitrificans 1 0 4 4161 1505648 species group 0 Geobacillus kaustophilus 1 1462 480 species 0 species 1692 33941 1 Geobacillus thermoleovorans 0 Geobacillus lituanicus 1 169283 1132 species 0 0 33938 857 species Geobacillus thermocatenulatus 1 0 1 Fictibacillus 3 1329200 3444 genus 7 0 1 Fictibacillus arsenicus species 255247 1824 Fictibacillus phosphorivorans 1 1221500 1613 species 0 Virgibacillus 7 6970 84406 71 genus 0 1 0 1223 2017483 species Virgibacillus phasianinus 1 1113 1473 species Virgibacillus pantothenticus 1 0 0 163877 1162 species Virgibacillus necropolis 1 0 2273 2620237 no rank 2 0 1 Virgibacillus sp. SK37 species 403957 958 0 Virgibacillus sp. 6R 1 1315 1911587 species Virgibacillus halodenitrificans 1 1482 1128 species 0 3 Halobacillus 2 genus 2302 45667 1 0 0 402384 1273 species Halobacillus mangrovi 1 1027 1570 species Halobacillus halophilus 1 0 2 Terribacillus 10 genus 1601 459532 1 0 0 1 Terribacillus aidingensis species 1591 586416 0 2 3460 2675229 genus species 1238 264697 1 Bacillus muralis 0 1478 2222 species Bacillus simplex 1 0 0 1 1479 29331 genus 1 Amphibacillus 2 species 1449 1478 1 Amphibacillus xylanus 0 0 1 5764 150247 genus 24 Anoxybacillus 6 species 294699 1055 1 Anoxybacillus amylolyticus 0 species 860 198467 1 Anoxybacillus gonensis 0 0 species 1518 33934 1 Anoxybacillus flavithermus 2 2307 2639704 no rank 0 0 1 Anoxybacillus sp. B7M1 species 1155 1490057 species 1490052 1152 1 Anoxybacillus sp. B2M1 0 0 2 genus 2675230 3040 1 Bacillus oceanisediminis species 1847 665099 0 0 1 Bacillus kochii species 859143 1193 1 0 9 genus 1906 182709 2 Oceanobacillus 0 species 182710 1897 1 Oceanobacillus iheyensis 1669 186821 family 1 Sporolactobacillaceae 2 0 1 0 1 no rank 663587 1668 0 species 1668 85683 1 [Bacillus] selenitireducens 27 Planococcaceae family 60 186818 26631 1 0 1 0 2 genus 157226 1719 2 Jeotgalibacillus 0 1 Jeotgalibacillus malaysiensis species 1508404 1717 0 1 648802 1041 8 genus Rummeliibacillus 2 species 1033 241244 1 Rummeliibacillus stabekisii 0 0 1 648800 2940 18 genus Solibacillus 3 0 1 no rank 2637870 1174 0 species 2048654 1174 1 Solibacillus sp. R5-41 species 76853 1748 1 Solibacillus silvestris 0 1 0 genus 1 1077 1649 2 Kurthia no rank 1076 2644826 1 0 Kurthia sp. 11kri321 1 1750719 1076 species 0 5 Sporosarcina genus 31 1569 8005 1 0 0 2 2647733 4066 no rank 0 Sporosarcina sp. P33 1 1930764 2106 species 0 Sporosarcina sp. P37 1 1930546 1960 species 1476 1129 species Sporosarcina psychrophila 1 0 0 Sporosarcina ureae 1 1571 2779 species 12 Planococcus 148 genus 1372 11789 1 0 Planococcus sp. L10.15 1 1302659 658 species 0 0 2611 192421 species Planococcus maritimus 1 0 species 1374 665 1 Planococcus kocurii 0 200991 1366 species Planococcus rifietoensis 1 species 1215089 838 1 Planococcus halocryophilus 0 1827 2662419 no rank 2 0 0 651 1526927 species Planococcus sp. PAMC 21323 1 2058136 1176 species Planococcus sp. MB-3u-03 1 0 Planococcus plakortidis 1 1272 1038856 species 0 0 Planococcus donghaensis 1 948 414778 species 0 Planococcus antarcticus 1 861 161360 species species 595 1598147 1 Planococcus faecalis 0 1 0 5 family 186824 1282 4 Thermoactinomycetaceae 2 Novibacillus 70 genus 1228 1677050 1 0 species 1471761 1158 1 Novibacillus thermophilus 0 0 1 Laceyella genus 49 292635 9 no rank 539002 7407 0 7 no rank 539742 6205 0 7 Exiguobacterium genus 134 33986 6205 1 0 Exiguobacterium antarcticum 1 132920 1155 species 0 0 no rank 2644629 3517 4 0 1 Exiguobacterium sp. MH3 species 802 1399115 1 Exiguobacterium sp. AT1b species 360911 1120 0 species 756 1849031 1 Exiguobacterium sp. U13-1 0 0 species 1224749 839 1 Exiguobacterium sp. ZWU0009 Exiguobacterium sibiricum 1 332410 1399 species 0 0 2 1202 539738 no rank 0 1 Gemella 2 1378 1202 genus 2 0 1 1200 2624949 no rank 0 species 1785995 1200 1 Gemella sp. oral taxon 928 0 1 Lactobacillales 163 186826 440504 9835 order 0 1 844 263855 no rank 0 1 Lactobacillales bacterium species 844 1993866 1 0 58 Lactobacillaceae family 405 33958 81216 1 2767892 901 genus 0 species 901 240427 1 Lactobacillus paracollinoides 0 0 2767893 2050 genus 3 0 152331 624 species Lactobacillus parabuchneri 1 1581 669 species Lactobacillus buchneri 1 0 1138822 757 species Lactobacillus curieae 1 0 16 Lactobacillus 5541 genus 1578 38528 1 0 1 Lactobacillus kefiranofaciens species 688 267818 0 0 4 1684 2620435 no rank 0 2099789 538 species Lactobacillus sp. CBA3606 1 1 Lactobacillus sp. wkB8 species 1545702 385 0 species 2099788 326 1 Lactobacillus sp. CBA3605 0 0 1 Lactobacillus sp. D1501 species 2108362 435 0 species 795 1579 1 Lactobacillus acidophilus species 83683 464 1 Lactobacillus amylolyticus 0 Lactobacillus acetotolerans 1 1600 511 species 0 Lactobacillus jensenii 1 109790 671 species 0 0 species 18712 1604 1 Lactobacillus amylovorus Lactobacillus delbrueckii 1 3796 1584 species 0 1591 1596 species Lactobacillus gasseri 1 0 Lactobacillus helveticus 1 1104 1587 species 0 0 52242 775 species Lactobacillus gallinarum 1 33959 2196 species Lactobacillus johnsonii 1 0 0 4 genus 8271 2767887 0 Lactobacillus agilis 1 1601 1688 species species 1624 3088 1 Lactobacillus salivarius 0 0 943 89059 species Lactobacillus acidipiscis 1 0 1623 2552 species Lactobacillus ruminis 1 0 3 genus 4924 2759736 Lactobacillus casei 1 1582 2273 species 0 0 1 Lactobacillus rhamnosus species 47715 1170 Lactobacillus paracasei 1 1597 1481 species 0 6 4590 2767879 genus 0 0 Lactobacillus crustorum 1 392416 662 species 0 Lactobacillus farciminis 1 1612 787 species Lactobacillus alimentarius 1 677 1602 species 0 0 species 1847728 751 1 Lactobacillus allii species 1074467 854 1 Lactobacillus heilongjiangensis 0 1007676 859 species Lactobacillus ginsenosidimutans 1 0 0 1 2767877 445 genus 0 1 Lactobacillus kunkeei species 148814 445 0 2 2767885 2065 genus 0 28038 727 species Lactobacillus curvatus 1 0 1 Lactobacillus sakei species 1338 1599 0 2 genus 2767889 1424 0 Lactobacillus backii 1 375175 508 species 916 1610 species Lactobacillus coryniformis 1 0 0 5339 2742598 genus 3 1 Lactobacillus mucosae species 2450 97478 0 0 Lactobacillus reuteri 1 1598 1491 species 1 Lactobacillus fermentum species 1398 1613 0 0 1 2151 2767876 genus species 2151 1603 1 Lactobacillus amylophilus 0 710 2767881 genus 2 0 species 53444 414 1 Lactobacillus lindneri 0 1 Lactobacillus sanfranciscensis species 1625 296 0 0 genus 3294 2767842 3 0 1804 1590 species Lactobacillus plantarum 1 species 1129 1589 1 Lactobacillus pentosus 0 0 Lactobacillus paraplantarum 1 361 60520 species 1 0 6 Pediococcus 29 genus 1253 3711 51663 651 species Pediococcus damnosus 1 0 0 Pediococcus claussenii 1 187452 612 species 0 1 Pediococcus pentosaceus species 737 1255 1 1670797 1156 species group 0 0 Pediococcus acidilactici 1 1156 1254 species 0 Pediococcus inopinatus 1 114090 526 species 2767890 420 genus 1 0 species 1193095 420 1 Lactobacillus hokkaidonensis 0 3 genus 2767886 1988 0 1 Lactobacillus zymae species 267363 525 0 1 Lactobacillus brevis species 869 1580 0 0 637971 594 species Lactobacillus koreensis 1 19 Enterococcaceae 81 family 81852 66293 1 0 genus 6881 62626 1350 12 Enterococcus 1 0 species 53345 1744 1 Enterococcus durans 0 2005703 1234 species Enterococcus wangshanyuanii 1 0 0 1 Enterococcus hirae species 1318 1354 0 Enterococcus mundtii 1 53346 1268 species 0 1 Enterococcus faecalis species 10488 1351 0 1 Enterococcus faecium species 35008 1352 species 818 37734 1 Enterococcus casseliflavus 0 0 no rank 2990 2608891 3 1 Enterococcus sp. FDAARGOS_375 species 2060307 1104 0 0 1 Enterococcus sp. CR-Ec1 species 923 2057791 0 1 Enterococcus sp. FDAARGOS_163 species 2060306 963 877 417368 species Enterococcus thailandicus 1 0 1 33969 635 genus 0 1 Melissococcus plutonius species 33970 635 0 0 1 Vagococcus 3 2737 1720 genus 75 species 881 519472 1 Vagococcus teuberi 0 species 764 633807 1 Vagococcus penaei 0 1 genus 51668 1231 2 Tetragenococcus 1 0 0 species 51669 1230 1 Tetragenococcus halophilus 0 1 262720 1300 family 7903 Streptococcaceae 49 1 0 43 Streptococcus 8843 genus 247408 1301 species 82348 793 1 Streptococcus pluranimalium 0 0 species 1313 2199 1 Streptococcus pneumoniae 1 Streptococcus agalactiae species 25037 1311 0 0 1 Streptococcus suis species 42084 1307 species 4628 197614 1 Streptococcus pasteurianus 0 0 Streptococcus halotolerans 1 737 1814128 species 0 species 102684 7532 1 Streptococcus infantarius 3 species group 671232 58293 0 Streptococcus intermedius 1 1817 1338 species 0 0 1 Streptococcus anginosus species 38876 1328 0 Streptococcus constellatus 1 76860 17600 species 0 14176 1304 species Streptococcus salivarius 1 0 4647 1318 species Streptococcus parasanguinis 1 0 1826 1811193 species Streptococcus pantholopis 1 Streptococcus mutans 1 1144 1309 species 0 0 6933 150055 species Streptococcus lutetiensis 1 0 Streptococcus parauberis 1 1544 1348 species 0 Streptococcus oralis 1 1303 3004 species 0 species 2589 1346 1 Streptococcus iniae 0 species 59310 703 1 Streptococcus macedonicus 0 836 1888195 species Streptococcus himalayensis 1 species 400065 856 1 Streptococcus merionis 0 0 2 119603 3000 species group 0 species 1334 821 1 Streptococcus dysgalactiae 0 species 2179 1336 1 Streptococcus equi 0 Streptococcus thermophilus 1 1308 4934 species 0 species 725 1349 1 Streptococcus uberis 1 Streptococcus cristatus species 1431 45634 0 Streptococcus gordonii 1 2641 1302 species 0 Streptococcus equinus 1 1335 2208 species 0 0 3069 1326 species Streptococcus acidominimus 1 1002 1825069 species Streptococcus marmotae 1 0 0 3102 1305 species Streptococcus sanguinis 1 1 Streptococcus gallolyticus species 315405 2730 0 7 2608887 27355 no rank 0 3482 1839799 species Streptococcus sp. FDAARGOS_192 1 0 species 692 1319 1 Streptococcus sp. 'group B' 0 0 Streptococcus sp. oral taxon 431 1 712633 1111 species 1 Streptococcus sp. NPS 308 species 954 1902136 0 1 Streptococcus sp. I-G2 species 1156431 7681 0 1759399 5568 species Streptococcus sp. A12 1 0 0 7867 1156433 species Streptococcus sp. I-P16 1 species 949 257758 1 Streptococcus pseudopneumoniae 0 1 Streptococcus mitis species 28037 3293 0 0 1 Streptococcus pyogenes species 2565 1314 1 0 5 Lactococcus 12 genus 7409 1357 1663 1363 species Lactococcus garvieae 1 0 species 1366 707 1 Lactococcus raffinolactis 0 0 689 1364 species Lactococcus piscium 1 4338 1358 species Lactococcus lactis 1 0 186828 6734 6 family Carnobacteriaceae 10 0 1 0 1 Jeotgalibaca 3 1688 1470540 genus 21 no rank 2621505 986 1 0 1 Jeotgalibaca sp. PTS2502 species 1903686 986 0 Jeotgalibaca dankookensis 1 708126 681 species 0 1 genus 191769 969 0 0 1 2632303 969 no rank 0 1 Marinilactibacillus sp. 15R species 969 1911586 1 0 5 Carnobacterium genus 21 2747 4071 0 2 257487 1856 no rank Carnobacterium sp. 17-4 1 208596 937 species 0 0 1 Carnobacterium sp. CP1 species 1564681 919 Carnobacterium maltaromaticum 1 2751 1098 species 0 0 Carnobacterium inhibens 1 1096 147709 species 186827 5445 family 8 Aerococcaceae 8 0 1 0 1 5437 1375 genus 117 Aerococcus 7 707 51665 species Aerococcus urinaeequi 1 0 0 1 Aerococcus christensenii species 996 87541 0 1200 119206 species Aerococcus sanguinicola 1 0 128944 668 species Aerococcus urinaehominis 1 0 Aerococcus urinae 1 1108 1376 species 0 1377 641 species Aerococcus viridans 1 0 1 Leuconostocaceae 17 81850 7417 family 6 Leuconostoc 9 4139 1243 genus 19 0 1 400 33964 species Leuconostoc citreum 1 0 0 1 Leuconostoc lactis species 1246 424 0 species 359 255248 1 Leuconostoc garlicum 0 400 1252 species Leuconostoc carnosum 1 no rank 436 2685106 1 0 0 species 979982 436 1 Leuconostoc sp. C2 0 1 Leuconostoc mesenteroides species 933 1245 Leuconostoc gelidum 1 617 1244 species 0 Leuconostoc kimchii 1 136609 551 species 0 0 46254 728 genus 1 0 728 1247 species Oenococcus oeni 1 6 Weissella 24 genus 46255 2544 1 0 1249 434 species Weissella paramesenteroides 1 0 0 Weissella cibaria 1 137591 490 species 1631871 588 species Weissella jogaejeotgali 1 0 Weissella ceti 1 759620 534 species 0 species 165096 474 1 Weissella koreensis 0 0 33974 2032 no rank 2 1 0 2 Ndongobacter 28 genus 2032 1930845 species 2004 1871025 1 Ndongobacter massiliensis 0 1 0 10 Elusimicrobia phylum 3 1958 74152 class 447830 1142 5 0 1783344 1142 order 1 Endomicrobiales 5 0 1 1 0 4 Endomicrobiaceae 2 family 1141 1783343 3 Endomicrobium 1 genus 1139 1408194 1 0 0 680 1408281 species Endomicrobium proavitum 1 1 Candidatus Endomicrobium trichonymphae species 1408204 458 0 0 no rank 411 99260 1 0 1 uncultured Termite group 1 bacterium species 167965 411 402 641853 class 3 0 Elusimicrobiales 3 641854 402 2 order 0 1 400 641876 family 2 Elusimicrobiaceae 2 0 1 0 1 genus 423604 398 Elusimicrobium minutum 1 398 423605 species 0 24 phylum 27398 32066 0 Fusobacteriia 24 27398 203490 class 9 0 1 1 0 order 17 203491 27389 23 Fusobacteriales 11 Leptotrichiaceae 16 family 1129771 8575 1 0 0 1 4999 32067 19 genus Leptotrichia 5 0 no rank 2633022 3843 3 1 Leptotrichia sp. oral taxon 498 species 1177 712368 0 1 Leptotrichia sp. oral taxon 847 species 912 1785996 0 species 1754 712357 1 Leptotrichia sp. oral taxon 212 0 0 species 1137 40542 1 Leptotrichia buccalis 1128 34104 genus 1 Streptobacillus 2 0 1 Streptobacillus moniliformis 1 1127 34105 species 0 168808 656 3 genus Sneathia 2 0 1 Sneathia amnii 1 187101 653 species 0 0 genus 1776 32068 1 Sebaldella termitidis 1 826 1776 species 0 family 24 203492 18797 11 Fusobacteriaceae 1 0 Fusobacterium 9 17890 848 92 genus 0 1 species 1046 859 1 Fusobacterium necrophorum 0 0 species 860 3539 1 Fusobacterium periodonticum 849 1415 species Fusobacterium gonidiaformans 1 0 0 species 851 4725 1 Fusobacterium nucleatum 0 856 2760 species Fusobacterium varium 1 0 1 Fusobacterium ulcerans species 1591 861 0 1 Fusobacterium mortiferum species 850 1342 0 1 Fusobacterium hwasookii species 1380 1583098 0 genus 167639 883 1 0 1 Ilyobacter polytropus species 883 167642 0 phylum 40117 5709 13 0 1 203693 5709 class 29 Nitrospira 13 0 1 189778 5680 59 order Nitrospirales 12 189779 5621 family 22 Nitrospiraceae 11 0 1 Nitrospira 5 3520 1234 genus 25 0 1 0 723 1325564 species Nitrospira japonica 1 1 Candidatus Nitrospira inopinata species 599 1715989 0 0 1 Nitrospira moscoviensis species 1219 42253 0 954 330214 species Nitrospira defluvii 1 501 28261 genus 1 0 0 species 501 28262 1 Thermodesulfovibrio yellowstonii 1 0 4 Leptospirillum 2 genus 179 1578 526 261385 species group 1 0 0 1 Leptospirillum sp. Group II 'CF-1' species 1660083 526 species group 655606 408 1 0 0 1 Leptospirillum ferrooxidans species 180 408 0 261386 642 species group 1 0 1 Leptospirillum ferriphilum species 642 178606 Proteobacteria 2017 2342265 1224 phylum 948 0 1 1 0 564 Alphaproteobacteria class 1998 28211 566018 0 1 Magnetococcales 4 1190 1191478 order 9 3 Magnetococcaceae 2 family 1181 1191479 1 0 genus 1 162171 1179 2 Magnetococcus 1 0 1 Magnetococcus marinus species 1124597 1178 0 Holosporales 7 789 1921002 4 order 0 1 3 Caedimonadaceae 2 family 2100208 230 1 0 1 genus 1509243 228 2 Candidatus Nucleicultrix 1 0 Candidatus Nucleicultrix amoebiphila 1 227 1509244 species 0 1 0 1 family 330 44746 2 Holosporaceae 329 204454 no rank 1 0 0 1 endosymbiont of Acanthamoeba sp. UWC8 species 329 86106 0 1 family 1777752 225 1 genus 1521255 225 0 225 91604 species Candidatus Paracaedibacter acanthamoebae 1 0 no rank 82117 5407 8 0 0 2 771 62654 clade genus 9 767891 771 2 Candidatus Puniceispirillum 1 0 0 Candidatus Puniceispirillum marinum 1 767892 762 species 1632780 1621 124 genus Phreatobacter 2 0 1 species 1497 1868589 1 Phreatobacter sp. S-12 0 1 0 14 genus 1311 213485 2 Micavibrio 0 1 Micavibrio aeruginosavorus species 349221 1297 0 1 991903 1704 genus 11 Polymorphum 2 Polymorphum gilvum 1 1693 991904 species 0 106136 204455 order 635 Rhodobacterales 94 0 1 Rhodobacteraceae 93 31989 105501 2135 family 0 1 0 1 Confluentimicrobium 2 1609958 1565 genus 5 0 1 1560 2643318 no rank 0 species 1560 1609966 1 Confluentimicrobium sp. EMB200-NS6 0 1 1905 74032 genus 9 Antarctobacter 2 0 species 1896 74033 1 Antarctobacter heliothermus 2 Marivivens 1 genus 1759396 694 1 0 no rank 693 2622455 1 0 0 693 1920883 species Marivivens sp. JLT3646 1 0 2 no rank 2191 58840 Rhodobacteraceae bacterium 1 1904441 926 species 0 1 Rhodobacteraceae bacterium QY30 species 2033435 1265 0 13 436357 genus Thalassococcus 1 0 5 Rhodobacter 103 genus 8385 1060 1 0 0 1 Rhodobacter capsulatus species 1061 1707 Rhodobacter sphaeroides 1 1063 4066 species 0 0 2 no rank 2509 196779 0 1 Rhodobacter sp. LPB0142 species 1850250 978 Rhodobacter sp. CZR27 1 1531 2033869 species 0 1123 285107 9 genus Thioclava 2 0 1 species 1114 1915078 1 Thioclava nitratireducens 0 1 0 genus 4 119541 941 2 Rhodobaca 0 1 Rhodobaca barguzinensis species 937 441209 Sagittula 2 58842 2788 genus 15 0 1 0 no rank 2624628 2773 1 Sagittula sp. P11 1 2773 2009329 species 0 Labrenzia 4 478070 5187 genus 50 0 1 0 1 Labrenzia aggregata species 187304 1883 0 2 no rank 2648686 3254 Labrenzia sp. CP4 1 1674922 1717 species 0 0 2021862 1537 species Labrenzia sp. VG12 1 Jannaschia 2 188905 1300 genus 6 0 1 0 1 2645469 1294 no rank species 1294 290400 1 Jannaschia sp. CCS1 0 1 0 genus 26 2715 92944 3 Ketogulonicigenium 92947 1136 species Ketogulonicigenium robustum 1 0 species 1553 92945 1 Ketogulonicigenium vulgare 0 Rhodovulum 4 34008 5528 genus 57 0 1 species 35806 2587 1 Rhodovulum sulfidophilum 0 2 no rank 2631432 2884 0 0 species 1530 1564506 1 Rhodovulum sp. P5 0 1354 308754 species Rhodovulum sp. MB263 1 164 genus 302485 10225 5 Phaeobacter 1 0 60890 2943 species Phaeobacter gallaeciensis 1 0 0 Phaeobacter inhibens 1 3887 221822 species 0 1 Phaeobacter piscinae species 1580596 2246 0 1844006 985 species Phaeobacter porticola 1 1 0 7 genus 1132 299261 2 Tateyamaria 0 Tateyamaria omphalii 1 299262 1125 species 4 Octadecabacter genus 16 2031 53945 1 0 species 446 1458307 1 Octadecabacter temperatus 0 0 759 1217908 species Octadecabacter antarcticus 1 0 53946 810 species Octadecabacter arcticus 1 528 1579315 genus 7 Halocynthiibacter 2 0 1 species 521 1579316 1 Halocynthiibacter arcticus 0 2211641 1347 genus 1 0 245188 1347 species Loktanella vestfoldensis 1 0 0 1 Loktanella genus 245186 2 1 0 196 genus 367771 2567 2 Marinovum Marinovum algicola 1 42444 2371 species 0 2 Planktomarina genus 1 1284657 746 1 0 745 1284658 species Planktomarina temperata 1 0 0 1 Celeribacter 5 875170 5006 36 genus 0 Celeribacter marinus 1 1397108 574 species 1 Celeribacter ethanolicus species 1263 1758178 0 0 1 Celeribacter indicus species 1685 1208324 0 species 1411902 1448 1 Celeribacter manganoxidans 3601 60136 genus 8 Sulfitobacter 3 0 1 0 1961 1402135 species Sulfitobacter pseudonitzschiae 1 0 1 196795 1632 no rank 1 Sulfitobacter sp. AM1-D1 species 1917485 1632 0 0 1 1262 159345 genus 1 Roseibacterium 2 1 Roseibacterium elongatum species 1261 159346 0 0 genus 1199 1649279 1 0 species 379347 1199 1 Ruegeria mobilis 1 0 3 Ruegeria genus 37 97050 3372 0 no rank 1160 2625375 1 species 292414 1160 1 Ruegeria sp. TM1040 0 0 Ruegeria pomeroyi 1 2175 89184 species 2 Pelagibaca 3 genus 360528 2329 1 0 Pelagibaca abyssi 1 2326 1250539 species 0 genus 4461 263377 2 0 2056 2640570 no rank 1 0 0 species 2056 1792508 1 Yangia sp. CCB-MM3 0 species 2405 1229727 1 Thiobacimonas profunda 1 0 43 genus 227873 2960 2 Pannonibacter 0 species 121719 2917 1 Pannonibacter phragmitetus Leisingera 2 191028 2185 genus 9 0 1 1 Leisingera methylohalidivorans species 133924 2176 0 11 genus 2545 1097466 2 Defluviimonas 1 0 species 1335048 2534 1 Defluviimonas alba 0 Roseobacter 3 1763 2433 8 genus 0 1 species 42443 1047 1 Roseobacter litoralis 0 0 species 708 2434 1 Roseobacter denitrificans Dinoroseobacter 2 309512 1731 genus 3 0 1 215813 1728 species Dinoroseobacter shibae 1 0 0 1 74030 1183 7 genus Roseovarius 2 Roseovarius mucosus 1 1176 215743 species 0 0 1 Paracoccus 9 16856 265 genus 266 0 species 266 2937 1 Paracoccus denitrificans 147645 3248 species Paracoccus yeei 1 0 0 Paracoccus contaminans 1 1945662 1818 species 1 Paracoccus zhejiangensis species 1077935 1752 0 Paracoccus aminovorans 1 34004 1864 species 0 0 species 1556 34003 1 Paracoccus aminophilus 0 1 1549 246570 no rank 1 Paracoccus sp. BM15 species 1529068 1549 0 0 1866 2065379 species Paracoccus sp. CBA4604 1 52 Rickettsiales order 8 766 6326 1 0 1 0 2 Candidatus Midichloriaceae 2 family 1328881 122 genus 120 411566 1 0 0 234827 120 species Candidatus Midichloria mitochondrii 1 362 1699067 no rank 1 0 0 Rickettsiales bacterium Ac37b 1 1528098 362 species 1 0 2 family 942 2468 22 Anaplasmataceae genus 1 372 33993 4 Neorickettsia 1 0 1 Neorickettsia sennetsu species 951 75 0 0 Neorickettsia helminthoeca 1 121 33994 species 1 Neorickettsia risticii species 175 950 0 0 1 Ehrlichia 6 862 943 genus 3 0 4 species group 106178 672 1 Ehrlichia canis species 174 944 0 0 Ehrlichia ruminantium 1 240 779 species 0 945 117 species Ehrlichia chaffeensis 1 1 Ehrlichia muris species 35795 141 0 1 106181 187 no rank 0 0 1 Ehrlichia sp. HF species 187 391036 tribe 952 831 8 0 0 1 Wolbachia 8 831 953 9 genus 0 7 no rank 822 2640676 0 Wolbachia endosymbiont of Brugia malayi 1 80849 93 species 0 1 Wolbachia endosymbiont of Drosophila simulans species 77038 324 0 species 163164 87 1 Wolbachia endosymbiont of Drosophila melanogaster 118 246273 species Wolbachia endosymbiont of Cimex lectularius 1 0 species 66084 95 1 Wolbachia sp. wRi 0 species 100901 49 1 Wolbachia endosymbiont of Onchocerca ochengi 0 77551 56 species Wolbachia endosymbiont of Onchocerca volvulus 1 0 0 3 genus 401 768 species 85 770 1 Anaplasma marginale 0 0 233 106179 species group 1 species 233 948 1 Anaplasma phagocytophilum 0 0 species 83 769 1 Anaplasma centrale 1 0 3 family 775 3366 26 Rickettsiaceae genus 218 2115980 1 0 species 2115978 218 1 Candidatus Phycorickettsia trachydisci 0 24 3145 33988 tribe 0 genus 340 2987 780 23 Rickettsia 1 0 2 species group 1129742 438 0 258 33990 species Rickettsia bellii 1 0 species 180 788 1 Rickettsia canadensis 0 0 2 species group 537 114292 356 785 species Rickettsia typhi 1 0 1 Rickettsia prowazekii species 782 181 0 1 114295 210 no rank 0 0 Rickettsia endosymbiont of Bemisia tabaci 1 337479 210 species 0 species group 114277 1462 17 0 1 Rickettsia philipii species 1105106 10 Rickettsia conorii 1 781 28 species 0 species 11 35792 1 Rickettsia parkeri 0 0 Rickettsia massiliae 1 104 35791 species Rickettsia africae 1 35788 12 species 0 0 species 176 787 1 Rickettsia australis 786 189 species Rickettsia akari 1 0 0 Rickettsia monacensis 1 109232 180 species 33989 120 species Rickettsia amblyommatis 1 0 species 33992 103 1 Rickettsia rhipicephali 0 0 Rickettsia heilongjiangensis 1 226665 14 species species 33991 104 1 Rickettsia montanensis 0 Rickettsia slovaca 1 25 35794 species 0 0 species 42862 246 1 Rickettsia felis 0 1 Rickettsia peacockii species 73 47589 0 Rickettsia rickettsii 1 52 783 species species 15 35790 1 Rickettsia japonica 0 0 genus 158 69474 1 0 species 784 158 1 Orientia tsutsugamushi 0 6 order 2800060 2425 0 1 Hyphomonadaceae 6 2425 69657 family 66 1 0 genus 1 609 2723 2 Hirschia 2724 608 species Hirschia baltica 1 0 genus 10 1750 85 3 Hyphomonas 1 0 0 1 no rank 756 2630699 species 1906738 756 1 Hyphomonas sp. Mor2 0 0 81032 984 species Hyphomonas neptunium 1 65 Rhodospirillales 1019 order 88297 204441 1 0 30 Rhodospirillaceae 1036 family 41295 52164 1 0 0 1 11384 13134 genus 335 Magnetospirillum 5 0 Magnetospirillum magneticum 1 2781 84159 species 0 55518 2924 species Magnetospirillum gryphiswaldense 1 0 no rank 2617991 5344 2 0 Magnetospirillum sp. XM-1 1 1663591 2457 species 2887 1639348 species Magnetospirillum sp. ME-1 1 0 315 genus 191 19116 5 Azospirillum 1 0 0 Azospirillum lipoferum 1 193 6802 species 0 Azospirillum brasilense 1 5726 192 species species 4356 528244 1 Azospirillum thiophilum 0 0 species 1917 1226968 1 Azospirillum humicireducens 1 1263978 204 genus 0 0 1 Candidatus Endolissoclinum faulkneri species 204 1263979 Thalassospira 3 3047 168934 41 genus 0 1 Thalassospira sp. CSC3H3 1 1548 2048283 species 0 1 Thalassospira xiamenensis species 220697 1458 0 0 1 1543704 2835 genus 13 Niveispirillum 2 0 Niveispirillum cyanobacteriorum 1 2822 1612173 species 2 Haematospirillum genus 4 615 1804663 1 0 0 1 Haematospirillum jordaniae species 1549855 611 1 0 6 genus 1194 1182780 2 Magnetospira 0 1188 2685734 no rank 1 1 Magnetospira sp. QH-2 species 1288970 1188 0 0 1 Tistrella 2 2640 171436 59 genus 0 171437 2581 species Tistrella mobilis 1 0 1 Rhodospirillum 3 4638 1081 46 genus Rhodospirillum rubrum 1 1085 1568 species 0 1 Rhodospirillum centenum species 34018 3024 0 1612157 1085 genus 15 Pararhodospirillum 2 0 1 0 species 1084 1070 1 Pararhodospirillum photometricum 0 1 Nitrospirillum 2 1543705 4370 56 genus Nitrospirillum amazonense 1 4314 28077 species 0 35114 433 478 family Acetobacteraceae 34 0 1 2 Asaia genus 24 91914 694 1 0 Asaia bogorensis 1 91915 670 species 0 0 1 364409 3322 21 genus Granulibacter 2 species 364410 3301 1 Granulibacter bethesdensis 0 Neoasaia 2 1025 320496 genus 20 0 1 0 Neoasaia chiangmaiensis 1 1005 320497 species 434 8425 genus 114 Acetobacter 8 0 1 1 Acetobacter senegalensis species 1356 446692 0 1 Acetobacter pomorum species 726 65959 0 0 Acetobacter pasteurianus 1 2416 438 species 0 151157 1066 subgenus 1 1066 435 species Acetobacter aceti 1 0 0 1 Acetobacter persici species 1076596 1097 species 1633874 648 1 Acetobacter oryzifermentans 0 species 1002 104102 1 Acetobacter tropicalis 0 83 genus 2813 522 3 Acidiphilium 1 0 0 1 Acidiphilium cryptum species 524 1313 0 1 Acidiphilium multivorum species 62140 1417 1 944 1602345 genus 0 0 1 Parasaccharibacter apium species 944 1510841 1 0 genus 5 742 153497 2 Kozakia species 737 153496 1 Kozakia baliensis 0 125216 5583 genus 203 Roseomonas 3 0 1 0 1 Roseomonas gilardii species 257708 2664 2716 2617492 no rank 1 0 Roseomonas sp. FDAARGOS_362 1 2716 2018065 species 0 1848 89583 genus 60 Gluconacetobacter 2 0 1 0 1788 33996 species Gluconacetobacter diazotrophicus 1 5 Komagataeibacter genus 150 1434011 6435 1 0 Komagataeibacter xylinus 1 2685 28448 species 0 Komagataeibacter europaeus 1 978 33995 species 0 0 1177712 1180 species Komagataeibacter medellinensis 1 0 Komagataeibacter nataicola 1 265960 1442 species 441 2805 29 genus Gluconobacter 3 0 1 1979 442 species Gluconobacter oxydans 1 0 0 species 318683 797 1 Gluconobacter albidus Rhizobiales 211 356 239370 2709 order 0 1 1 0 20 Brucellaceae family 79 118882 11374 genus 40 528 5454 5 Ochrobactrum 1 0 0 571256 1462 species Ochrobactrum pituitosum 1 species 1145 271865 1 Ochrobactrum sp. A44 0 0 species 1346 529 1 Ochrobactrum anthropi Ochrobactrum pseudogrignonense 1 1461 419475 species 0 0 1 234 5841 1995 genus Brucella 14 1 Brucella suis species 212 29461 0 4 no rank 1265 2632610 0 1 Brucella sp. 09RB8910 species 1844051 351 0 1 Brucella sp. 2002734562 species 219 1891098 0 0 species 1149952 383 1 Brucella sp. 09RB8471 312 1885919 species Brucella sp. 141012304 1 0 235 232 species Brucella abortus 1 0 236 107 species Brucella ovis 1 0 0 1 Brucella pinnipedialis species 526 120576 0 1 Brucella vulpis species 981386 268 0 444163 162 species Brucella microti 1 0 1 Brucella canis species 366 36855 0 Brucella melitensis 1 203 29459 species 1 Brucella ceti species 505 120577 0 1 0 4 Chelatococcaceae family 52 3601 2036754 Chelatococcus 3 3549 28209 genus 131 0 1 0 1381 444444 species Chelatococcus daeguensis 1 0 2037 2638111 no rank 1 0 1 Chelatococcus sp. CO-6 species 2037 1702325 Rhizobiaceae 54 82115 78708 708 family 0 1 0 35 no rank 227290 58386 1 0 2964 genus 379 40550 26 Rhizobium no rank 17914 2613769 20 0 species 1125847 1458 1 Rhizobium sp. NT-26 0 0 species 218 1703961 1 Rhizobium sp. N1314 0 1703967 2 species Rhizobium sp. N741 1 1 Rhizobium sp. CIAT894 species 1344 2020312 0 species 424182 1441 1 Rhizobium sp. IRBG74 0 species 1703965 21 1 Rhizobium sp. N6212 0 Rhizobium sp. Kim5 1 2020311 1065 species 0 Rhizobium sp. N731 1 218 1703966 species 0 0 Rhizobium sp. N1341 1 1703962 1 species 0 Rhizobium sp. N621 1 1703964 21 species 1869170 1221 species Rhizobium sp. S41 1 0 0 1 Rhizobium sp. Y9 species 1446 1914541 0 species 2020313 217 1 Rhizobium sp. TAL182 4 1703968 species Rhizobium sp. N871 1 0 0 Rhizobium sp. NXC14 1 813 1981173 species 0 Rhizobium sp. NXC24 1 2048897 1507 species 0 1 Rhizobium sp. N324 species 1703969 1425 1950 1571470 species Rhizobium sp. ACO-34A 1 0 0 1 Rhizobium sp. 10195 species 2028343 2313 species 1301032 1229 1 Rhizobium sp. IE4771 0 0 Rhizobium etli 1 4400 29449 species 0 species 396 2230 1 Rhizobium phaseoli 0 Rhizobium leguminosarum 1 8862 384 species Rhizobium gallicum 1 56730 2351 species 0 Rhizobium tropici 1 1829 398 species 0 1 0 7 genus 1525371 3051 2 Neorhizobium species 3044 399 1 Neorhizobium galegae 0 0 1 357 14785 genus 279 Agrobacterium 7 0 2 no rank 2961 2632611 species 861208 1891 1 Agrobacterium sp. H13-3 0 0 species 1842536 1070 1 Agrobacterium sp. RAC06 0 373 1552 species Agrobacterium vitis 1 0 species group 8336 1183400 2 1 Agrobacterium fabrum species 1176649 1795 0 0 species 6541 358 1 Agrobacterium tumefaciens 1 Agrobacterium rhizogenes species 359 1657 0 0 10 no rank 16691 227292 0 1 Ensifer 3 106591 3298 22 genus 0 Ensifer sojae 1 1439 716925 species species 1837 106592 1 Ensifer adhaerens 0 28105 13393 genus 277 Sinorhizobium 7 0 1 382 3560 species Sinorhizobium meliloti 1 0 0 species 1650 194963 1 Sinorhizobium americanum no rank 2613772 2799 2 0 Sinorhizobium sp. CCBAU 05631 1 794846 1010 species 0 1842534 1789 species Sinorhizobium sp. RAC02 1 0 0 Sinorhizobium medicae 1 110321 1520 species 0 species group 3587 663276 1 0 species 3587 380 1 Sinorhizobium fredii 872 34019 genus 29 Liberibacter 6 0 1 0 species 1273132 266 1 Liberibacter crescens species 165 34020 1 Candidatus Liberibacter africanus 0 0 118 309868 species Candidatus Liberibacter americanus 1 0 Candidatus Liberibacter solanacearum 1 556287 187 species 0 107 34021 species Candidatus Liberibacter asiaticus 1 1 0 8 genus 2051 323620 2 Shinella 0 1 2643062 2043 no rank Shinella sp. HZN7 1 879274 2043 species 0 1 0 19 Hyphomicrobiaceae 129 family 16568 45401 Filomicrobium 2 544 119044 genus 4 0 1 0 Candidatus Filomicrobium marinum 1 1608628 540 species Blastochloris 2 1716 59282 62 genus 0 1 1654 1079 species Blastochloris viridis 1 0 2 Rhodomicrobium genus 10 1280 1068 1 0 Rhodomicrobium vannielii 1 1069 1270 species 0 1830 29407 genus 60 Rhodoplanes 2 0 1 0 1 1770 2619116 no rank 674703 1770 species Rhodoplanes sp. Z2-YC6860 1 0 1 0 genus 45 1272 1082930 2 Pelagibacterium 531813 1227 species Pelagibacterium halotolerans 1 0 0 1 Hyphomicrobium 4 4788 81 35 genus species 1439 53399 1 Hyphomicrobium denitrificans 0 1 Hyphomicrobium nitrativorans species 1427356 1755 0 no rank 2619925 1559 1 0 0 1 Hyphomicrobium sp. MC1 species 717785 1559 46913 5009 110 genus Devosia 4 0 1 3 4899 196773 no rank 0 0 2083786 1059 species Devosia sp. I507 1 Devosia sp. A16 1 2232 1736675 species 0 1608 1643450 species Devosia sp. H5989 1 0 335928 7667 99 family Xanthobacteraceae 7 0 1 152053 1945 genus 32 Starkeya 2 0 1 0 species 921 1913 1 Starkeya novella 44 genus 2790 279 2 Xanthobacter 1 0 0 1 Xanthobacter autotrophicus species 280 2746 1 0 2 Azorhizobium genus 71 6 2833 Azorhizobium caulinodans 1 7 2762 species 0 900 119043 family 3 Rhodobiaceae 3 0 1 1 0 14 genus 897 256616 2 Parvibaculum 1 Parvibaculum lavamentivorans species 883 256618 0 18 Bartonellaceae family 6 772 4017 1 0 1 0 17 Bartonella genus 25 4011 773 1 Bartonella australis species 388640 148 0 0 Bartonella quintana 1 193 803 species 0 Bartonella henselae 1 193 38323 species 0 Bartonella grahamii 1 269 33045 species 0 6 940 2645622 no rank Bartonella sp. 1-1C 1 515256 110 species 0 0 109 1933912 species Bartonella sp. Raccoon60 1 1933907 165 species Bartonella sp. JB63 1 0 0 1933906 165 species Bartonella sp. JB15 1 0 277 1933904 species Bartonella sp. WD16.2 1 1 Bartonella sp. A1379B species 114 1933910 0 0 species 56426 309 1 Bartonella clarridgeiae 0 1 Bartonella vinsonii species 226 33047 0 Bartonella ancashensis 1 116 1318743 species 0 119 774 species Bartonella bacilliformis 1 0 1224 1686310 species Bartonella apis 1 0 1 Bartonella tribocorum species 249 85701 family 126 69277 22563 20 Phyllobacteriaceae 1 0 1250 449972 genus 15 Chelativorans 2 0 1 0 1 2643807 1235 no rank 1 Chelativorans sp. BNC1 species 1235 266779 0 1 0 genus 639 15174 68287 9 Mesorhizobium 0 39645 2430 species Mesorhizobium ciceri 1 0 species 381 1885 1 Mesorhizobium loti 0 Mesorhizobium australicum 1 536018 1595 species 0 Mesorhizobium japonicum 1 2066070 1838 species 0 1794 325217 no rank 1 0 Mesorhizobium sp. WSM1497 1 278153 1794 species 1980 593909 species Mesorhizobium opportunistum 1 0 0 71433 1937 species Mesorhizobium amorphae 1 1076 1670800 species Mesorhizobium sp. B7 1 0 1 0 genus 27 2152 31988 2 Aminobacter 0 2125 83263 species Aminobacter aminovorans 1 0 1 1318 245876 genus 19 Nitratireductor 2 0 472175 1299 species Nitratireductor basaltis 1 Hoeflea 2 1253 274591 genus 9 0 1 1 2614931 1244 no rank 0 species 1620421 1244 1 Hoeflea sp. IMCC20628 0 0 1 28100 1290 genus 10 Phyllobacterium 2 1280 1867719 species Phyllobacterium zundukense 1 0 family 141 119045 31261 15 Methylobacteriaceae 1 0 3 genus 2282523 11021 0 0 1 Methylobacterium zatmanii species 29429 1811 0 1 Methylobacterium extorquens species 6147 408 1 Methylobacterium populi species 223967 3063 0 0 1 2612 186650 40 genus Microvirga 2 1 Microvirga ossetica species 2572 1882682 0 1 0 genus 796 17487 407 9 Methylobacterium species 114616 2058 1 Methylobacterium nodulans 0 1 Methylobacterium oryzae species 1638 334852 0 418223 1748 species Methylobacterium phyllosphaerae 1 0 Methylobacterium aquaticum 1 2793 270351 species 0 0 3 no rank 6242 2615210 0 1 Methylobacterium sp. 4-46 species 2297 426117 1819 925818 species Methylobacterium sp. AMS5 1 0 0 species 1479019 2126 1 Methylobacterium sp. C1 0 31998 2212 species Methylobacterium radiotolerans 1 0 1 45404 1729 family 8 Beijerinckiaceae 5 1 0 2 Methylocella 8 genus 834 120652 species 199596 826 1 Methylocella silvestris 0 Beijerinckia 2 887 532 19 genus 0 1 species 868 533 1 Beijerinckia indica 0 42386 41294 family 382 Bradyrhizobiaceae 26 0 1 Bradyrhizobium 11 21409 374 genus 579 0 1 0 species 1274631 1407 1 Bradyrhizobium icense 6 no rank 2631580 11971 0 0 species 115808 1967 1 Bradyrhizobium sp. ORS 285 0 2193 2057741 species Bradyrhizobium sp. SK17 1 1 Bradyrhizobium sp. ORS 278 species 114615 2036 0 species 1871 288000 1 Bradyrhizobium sp. BTAi1 0 0 species 1956 376 1 Bradyrhizobium sp. species 1948 1223566 1 Bradyrhizobium sp. CCGE-LA001 0 0 375 2611 species Bradyrhizobium japonicum 1 44255 1860 species Bradyrhizobium oligotrophicum 1 0 1 Bradyrhizobium diazoefficiens species 2981 1355477 0 1 0 2 Variibacter 8 genus 1649510 731 1333996 723 species Variibacter gotjawalensis 1 0 1776 911 17 genus Nitrobacter 3 0 1 1 Nitrobacter winogradskyi species 913 889 0 0 1 Nitrobacter hamburgensis species 870 912 0 1 Oligotropha 2 1023 40136 genus 6 0 1017 40137 species Oligotropha carboxidovorans 1 1 0 114 genus 7157 85413 5 Bosea 0 species 1526658 2068 1 Bosea vaviloviae 0 3 no rank 4975 2653178 species 1783 1842539 1 Bosea sp. RAC05 0 2015316 1683 species Bosea sp. AS-1 1 0 0 species 1509 1792307 1 Bosea sp. PAMC 26642 1073 9908 genus 153 Rhodopseudomonas 2 0 1 0 1 Rhodopseudomonas palustris species 9755 1076 255475 8358 58 family Aurantimonadaceae 7 0 1 2 Aureimonas genus 13 414371 1867 1 0 2615206 1854 no rank 1 0 0 1349819 1854 species Aureimonas sp. AU20 1 0 1 Martelella 4 293088 6433 genus 83 2155 2629616 no rank 1 0 Martelella sp. AD-3 1 686597 2155 species 0 species 293089 1752 1 Martelella mediterranea 0 0 1486262 2443 species Martelella endophytica 1 0 4475 119042 no rank 6 1 0 36 genus 1484898 1737 2 Methyloceanibacter 0 species 1384459 1701 1 Methyloceanibacter caenitepidi Hartmannibacter 2 1519 1572860 18 genus 0 1 0 1482074 1501 species Hartmannibacter diazotrophicus 1 Pseudorhodoplanes 2 1734920 1219 genus 47 0 1 1 Pseudorhodoplanes sinuspersici species 1235591 1172 0 1 0 family 19 3054 31993 6 Methylocystaceae 3 Methylocystis 54 genus 133 1443 1 0 0 1 no rank 2625913 891 Methylocystis sp. SC2 1 187303 891 species 0 0 498 655015 species Methylocystis bryophila 1 1 0 44 genus 425 1592 2 Methylosinus 0 species 1548 426 1 Methylosinus trichosporium Parvularculales 4 508 255473 4 order 0 1 Parvularculaceae 3 504 255474 family 11 0 1 208215 493 1 genus Parvularcula 2 0 1 492 208216 species Parvularcula bermudensis 1 0 84228 204457 order 708 Sphingomonadales 82 0 1 Erythrobacteraceae 22 335929 18172 family 416 0 1 0 2800681 1930 genus 2 1 Erythrobacter atlanticus species 1648404 725 0 0 species 502682 1205 1 Erythrobacter gangjinensis 1725 1855416 genus 2 0 0 species 266951 757 1 Erythrobacter seohaensis 0 1 Erythrobacter flavus species 968 192812 4 Altererythrobacter 86 genus 3184 361177 1 0 0 species 447 476157 1 Altererythrobacter ishigakiensis 0 Altererythrobacter atlanticus 1 1486 1267766 species 0 1 Altererythrobacter epoxidivorans species 1165 361183 0 1 991 2800682 genus Altererythrobacter namhicola 1 645517 991 species 0 6 no rank 4518 2800788 0 1 0 genus 59 1041 2317 3 Erythrobacter 0 1 Erythrobacter litoralis species 39960 1432 species 826 1112 1 Porphyrobacter neustonensis 0 2201 1111 genus 97 Porphyrobacter 3 0 1 0 no rank 2683265 2104 2 0 1 Porphyrobacter sp. LM 6 species 748 1896196 0 species 1356 2023229 1 Porphyrobacter HT-58-2 2 1375 2800686 genus 0 1 Altererythrobacter mangrovi species 773 1982042 0 602 692370 species Altererythrobacter dongtanensis 1 0 0 1 2800685 935 genus 0 species 543877 935 1 Altererythrobacter marensis 1 0 50 genus 1295327 3098 3 Croceicoccus 1 Croceicoccus naphthovorans species 1348774 985 0 0 450378 2063 species Croceicoccus marinus 1 1 0 59 Sphingomonadaceae 873 family 41297 65348 1 0 15 Sphingobium 367 genus 18600 165695 species 876 76947 1 Sphingobium herbicidovorans 0 1360 332055 species Sphingobium indicum 1 0 0 1 Sphingobium cloacae species 1443 120107 1662 13690 species Sphingobium yanoikuyae 1 0 0 6 no rank 2611147 7611 1270 627192 species Sphingobium sp. SYK-6 1 0 0 species 1780 484429 1 Sphingobium sp. YBL2 0 species 1118 1843368 1 Sphingobium sp. RAC03 species 1315974 1714 1 Sphingobium sp. TKS 0 0 species 1855519 783 1 Sphingobium sp. EP60837 0 Sphingobium sp. MI1205 1 946 407020 species 1332080 1206 species Sphingobium baderi 1 0 0 Sphingobium japonicum 1 332056 1256 species species 46429 1116 1 Sphingobium chlorophenolicum 0 Sphingobium hydrophobicum 1 1703 1673076 species 0 0 1 Zymomonas 2 1292 541 1 genus Zymomonas mobilis 1 542 1291 species 0 2 Rhizorhabdus 10 genus 1135 1649486 1 0 1 Rhizorhabdus dicambivorans species 1850238 1125 0 150203 1514 genus 56 Blastomonas 2 0 1 0 no rank 2626550 1458 1 1 Blastomonas sp. RAC04 species 1458 1842535 0 0 2709685 856 genus 1 266812 856 species Sphingorhabdus flavimaris 1 0 1434046 1666 genus 93 Sphingorhabdus 3 0 1 2 no rank 2614947 1573 0 0 Sphingorhabdus sp. YGSMI21 1 651 2077182 species 0 922 1806885 species Sphingorhabdus sp. M41 1 0 1 165697 10576 genus 219 Sphingopyxis 10 0 Sphingopyxis granuli 1 1488 267128 species Sphingopyxis macrogoltabida 1 2352 33050 species 0 Sphingopyxis alaskensis 1 117207 998 species 0 0 1 Sphingopyxis fribergensis species 1515612 1061 4 2614943 3466 no rank 0 1 Sphingopyxis sp. 113P3 species 925 292913 0 species 886 1866325 1 Sphingopyxis sp. MG 0 1 Sphingopyxis sp. LPB0140 species 1913578 359 0 0 species 1296 1357916 1 Sphingopyxis sp. QXT-31 0 species 33052 992 1 Sphingopyxis terrae genus 10 72173 939 2 Citromicrobium 1 0 0 1 2630544 929 no rank species 929 1634516 1 Citromicrobium sp. JL477 0 1 0 15 Sphingomonas 437 genus 13687 20748 1 Sphingomonas hengshuiensis species 1446 1609977 0 0 1 Sphingomonas panacis species 1560345 1261 0 no rank 7800 196159 6 1035 1030157 species Sphingomonas sp. KC8 1 0 1 Sphingomonas sp. LM7 species 1938607 1404 0 0 1 Sphingomonas sp. MM-1 species 1491 745310 0 1 Sphingomonas sp. NIC1 species 1304 1961362 1 Sphingomonas sp. LK11 species 1390395 1224 0 0 1 Sphingomonas sp. Cra20 species 1342 1327635 0 152682 1579 species Sphingomonas melonis 1 1549858 1365 species Sphingomonas taxi 1 0 0 1 Sphingomonas koreensis species 1548 93064 Sphingomonas sanxanigenens 1 1747 397260 species 0 Sphingomonas wittichii 2 3565 160791 1651 species 0 1 Sphingomonas sp. DC-6 1 1283312 1914 strain 0 2685927 1327 genus 1 0 1 Sphingomonas sp. JJ-A5 species 1921510 1327 0 5822 165696 genus 120 Novosphingobium 5 0 1 Novosphingobium pentaromativorans 1 205844 1320 species 0 158500 1696 species Novosphingobium resinovorum 1 0 species 48935 1212 1 Novosphingobium aromaticivorans 0 no rank 2644732 1474 1 0 Novosphingobium sp. PP1Y 1 1474 702113 species 0 Caulobacterales 20 204458 27247 order 136 0 1 1 0 19 Caulobacteraceae 472 family 27111 76892 1 0 2 Asticcacaulis genus 15 1869 76890 0 1 Asticcacaulis excentricus species 1854 78587 1 490 81440 no rank 0 0 Caulobacteraceae bacterium OTSz_A_272 1 1759059 490 species 7 Brevundimonas genus 231 41275 8808 1 0 1 Brevundimonas vesicularis species 1242 41276 0 2622653 4193 no rank 3 0 0 species 1433 1938605 1 Brevundimonas sp. LM2 species 1423 1827469 1 Brevundimonas sp. GW460-12-10-14-LB2 0 1 Brevundimonas sp. DS20 species 1532555 1337 0 0 Brevundimonas subvibrioides 1 1591 74313 species 0 species 588932 1551 1 Brevundimonas naejangsanensis 1 0 genus 40 2267 20 2 Phenylobacterium 0 species 2227 284016 1 Phenylobacterium zucineum 75 13205 204 genus Caulobacter 6 0 1 Caulobacter vibrioides 1 3773 155892 species 0 0 species 2032 88688 1 Caulobacter segnis 0 species 1774 69666 1 Caulobacter mirabilis Caulobacter henricii 1 1705 69395 species 0 0 no rank 3717 2648921 1 3717 366602 species Caulobacter sp. K31 1 0 1270 54526 2 order Pelagibacterales 8 0 1 1 239 2045213 genus 0 0 239 1925548 species Candidatus Fonsibacter ubiquis 1 6 Pelagibacteraceae family 1 1655514 1029 1 0 198251 549 genus 1 Candidatus Pelagibacter 3 0 1 2647897 256 no rank 1 0 0 1 Candidatus Pelagibacter sp. IMCC9063 species 256 1002672 0 Candidatus Pelagibacter ubique 1 198252 292 species 2 no rank 479 1655516 0 229 744985 species alpha proteobacterium HIMB59 1 0 species 250 859653 1 alpha proteobacterium HIMB5 0 order 2800059 827 2 0 2 family 2800061 827 0 0 1 74317 827 14 genus Maricaulis 2 Maricaulis maris 1 813 74318 species 0 0 198 subphylum 285253 68525 124 Deltaproteobacteria class 444 194429 28221 1 0 order 4 213113 842 6 Desulfurellales 1 0 5 Desulfurellaceae 3 family 117942 838 1 0 1 0 2 Hippea genus 8 84404 420 species 84405 412 1 Hippea maritima 0 1 0 2 Desulfurella 10 genus 33001 415 0 species 405 33002 1 Desulfurella acetivorans 0 1 Syntrophobacterales 9 213462 4293 27 order 17 family 213468 3207 5 Syntrophaceae 1 0 1 894 60892 genus 0 species 60893 894 1 Desulfobacca acetoxidans 0 896 2357 genus 1 0 species 2358 896 1 Desulfomonile tiedjei 0 2 Syntrophus genus 12 43773 1400 1 0 species 1388 316277 1 Syntrophus aciditrophicus 0 3 Syntrophobacteraceae family 5 213465 1059 1 0 29526 1054 genus 12 Syntrophobacter 2 0 1 0 119484 1042 species Syntrophobacter fumaroxidans 1 0 1 66761 29 order 684 Myxococcales 38 0 51163 80811 suborder 26 3 Vulgatibacteraceae 30 family 1992 1524213 1 0 genus 26 1962 1524214 2 Vulgatibacter 1 0 1 Vulgatibacter incomptus species 1936 1391653 0 9 Myxococcaceae family 142 31 25285 1 0 Corallococcus 3 83461 8801 142 genus 0 1 species 5081 184914 1 Corallococcus coralloides 0 0 1 Myxococcus macrosporus species 35 3578 5 Myxococcus genus 512 16342 32 1 0 0 species 6688 33 1 Myxococcus fulvus 2972 83455 species Myxococcus stipitatus 1 0 2949 1297742 species Myxococcus hansupus 1 0 0 species 34 3221 1 Myxococcus xanthus 0 1 39 14555 296 family Archangiaceae 9 1 0 98 genus 4205 47 2 Archangium 0 1 Archangium gephyra species 4107 48 1 0 genus 32 44 3219 2 Melittangium 0 83453 3187 species Melittangium boletus 1 3120 40 9 genus Stigmatella 2 0 1 Stigmatella aurantiaca 1 41 3111 species 0 1 0 48 genus 3715 42 2 Cystobacter 0 1 Cystobacter fuscus species 3667 43 5 Anaeromyxobacteraceae 84 family 9331 1524215 1 0 4 Anaeromyxobacter genus 164 9247 161492 1 0 0 1 Anaeromyxobacter dehalogenans species 4340 161493 2 4743 2620896 no rank 0 0 Anaeromyxobacter sp. Fw109-5 1 2089 404589 species 0 Anaeromyxobacter sp. K 1 447217 2654 species 0 11235 80812 suborder 8 3 Sandaracinaceae 17 family 2067 1055686 1 0 1 0 2 Sandaracinus 20 genus 1055688 2050 species 2030 927083 1 Sandaracinus amylolyticus 0 5 Polyangiaceae family 118 49 9168 1 0 0 1 Chondromyces 2 50 2033 genus 1 52 2032 species Chondromyces crocatus 1 0 1 0 2 Sorangium 36 genus 7017 39643 1 Sorangium cellulosum species 6981 56 0 0 3 224462 3679 suborder Kofleriaceae 3 224464 3679 31 family 0 1 0 1 162027 3648 genus 41 Haliangium 2 0 1 Haliangium ochraceum species 3607 80816 Desulfobacterales 18 213118 14602 160 order 0 1 1 0 9 Desulfobacteraceae 72 family 213119 7821 1 0 genus 2 2295 1204 2 Desulfobacterium 1 Desulfobacterium autotrophicum species 2296 1202 0 0 1 3580 896 29 genus Desulfococcus 3 0 1 Desulfococcus oleovorans species 1997 181663 897 1554 species Desulfococcus multivorans 1 0 0 1 Desulfobacula 2 1071 28222 genus 1 1 Desulfobacula toluolica species 28223 1070 0 0 1 genus 1894 218207 0 1 Desulfatibacillum alkenivorans species 1894 259354 1 0 family 28 6621 213121 8 Desulfobulbaceae 0 1 Desulfobulbus 2 2278 893 8 genus 0 1 Desulfobulbus sp. ORNL species 1986146 2270 genus 109168 646 1 0 0 Desulfotalea psychrophila 1 84980 646 species Desulfocapsa 2 737 53318 genus 2 0 1 Desulfocapsa sulfexigens 1 735 65555 species 0 0 1 Desulfurivibrio 2 427922 2932 genus 20 1 Desulfurivibrio alkaliphilus species 427923 2912 0 531 order 40232 69541 23 Desulfuromonadales 1 0 0 1 Geobacteraceae 13 213422 26475 family 167 0 genus 392332 2350 1 0 1 Geoalkalibacter subterraneus species 483547 2350 0 1 23958 28231 591 genus Geobacter 11 0 species 2801 313985 1 Geobacter lovleyi 0 species 1212 1203471 1 Geobacter daltonii 0 Geobacter pickeringii 1 345632 2106 species 2 no rank 5435 2627627 0 species 2344 443144 1 Geobacter sp. M21 0 Geobacter sp. M18 1 443143 3091 species 0 0 1 Geobacter anodireducens species 2405 1340425 28232 2438 species Geobacter metallireducens 1 0 0 species 351604 2015 1 Geobacter uraniireducens Geobacter sulfurreducens 1 35554 2114 species 0 Geobacter bemidjiensis 1 225194 2841 species 0 0 1 213421 13226 299 family Desulfuromonadaceae 9 1 0 50 genus 890 4815 3 Desulfuromonas 0 species 2617 1603606 1 Desulfuromonas soudanensis no rank 2614637 2148 1 0 1 Desulfuromonas sp. DDH964 species 2148 1823759 0 1 0 genus 119 18 8112 5 Pelobacter 0 no rank 1473 2620299 1 species 1842532 1473 1 Pelobacter sp. SFB93 0 2904 29543 species Pelobacter propionicus 1 0 Pelobacter acetylenicus 1 2152 29542 species 0 0 species 19 1464 1 Pelobacter carbinolicus 564 order 63493 213115 25 Desulfovibrionales 1 0 1 family 213117 991 2 Desulfohalobiaceae 1 0 0 990 45662 genus 1 45663 990 species Desulfohalobium retbaense 1 0 1 0 family 108 213116 4453 4 Desulfomicrobiaceae Desulfomicrobium 3 4345 898 genus 37 0 1 Desulfomicrobium baculatum 1 2263 899 species 0 2045 132132 species Desulfomicrobium orale 1 0 0 1 57485 194924 family 365 Desulfovibrionaceae 18 1 0 2 Lawsonia 3 genus 732 41707 species 29546 729 1 Lawsonia intracellularis 0 1 genus 2794998 1768 0 0 species 1768 880 1 Desulfovibrio salexigens 1 0 genus 58 2035811 7830 4 Pseudodesulfovibrio 0 1 Pseudodesulfovibrio indicus species 3423 1716143 57320 1490 species Pseudodesulfovibrio profundus 1 0 Pseudodesulfovibrio aespoeensis 1 2859 182210 species 0 0 2582840 2658 genus 1 873 2658 species Desulfovibrio africanus 1 0 1 0 386 genus 44132 872 9 Desulfovibrio Desulfovibrio desulfuricans 1 7272 876 species 0 species 7290 901 1 Desulfovibrio piger 0 1 Candidatus Desulfovibrio trichonymphae species 1300 1725232 0 0 1 Desulfovibrio alaskensis species 58180 2816 0 2593640 3925 no rank 1 0 species 3925 631220 1 Desulfovibrio sp. G11 Desulfovibrio magneticus 1 184917 4387 species 0 0 1 Desulfovibrio vulgaris species 881 10929 species 5827 44742 1 Desulfovibrio fairfieldensis 0 3762 453227 66 order Desulfarculales 4 0 1 1 0 family 22 453228 3696 3 Desulfarculaceae Desulfarculus 2 3674 453229 40 genus 0 1 1 Desulfarculus baarsii species 3634 453230 0 0 1 Epsilonproteobacteria 74 29547 90824 257 class Nautiliales 6 1298 235899 order 1 0 1 0 2 2795691 508 family 1 0 2 Nitratiruptor 1 genus 269258 508 1 no rank 507 2624044 0 0 species 387092 507 1 Nitratiruptor sp. SB155-2 Nautiliaceae 3 789 224467 27 family 0 1 0 1 191291 762 17 genus Nautilia 2 0 species 244787 745 1 Nautilia profundicola 1 0 67 Campylobacterales order 4180 213849 89269 5 2771472 2654 family 0 1 0 2 Nitratifractor 7 genus 1132 269260 0 269261 1125 species Nitratifractor salsuginis 1 1 0 3 Sulfurovum genus 21 1522 265570 0 206403 626 species Sulfurovum lithotrophicum 1 1 2646778 875 no rank 0 0 875 387093 species Sulfurovum sp. NBC37-1 1 6 family 5108 72293 15 Helicobacteraceae 1 0 209 4522 genus 16 Helicobacter 12 0 1 0 species 199 212 1 Helicobacter acinonychis 1 Helicobacter typhlonius species 76936 210 0 0 Helicobacter bilis 1 37372 225 species no rank 291 2593540 1 0 Helicobacter sp. MIT 01-6242 1 222136 291 species 0 1 Helicobacter felis species 139 214 0 0 species 1937 210 1 Helicobacter pylori Helicobacter hepaticus 1 380 32025 species 0 0 Helicobacter mustelae 1 243 217 species 0 1 Helicobacter cetorum species 322 138563 0 1 Helicobacter himalayensis species 1591088 243 317 213 species Helicobacter cinaedi 1 0 1 0 6 genus 843 580 2 Wolinella 0 Wolinella succinogenes 1 844 574 species 0 family 1541 2771471 5 0 1 Sulfurimonas 3 202746 915 2 genus 0 381 39766 species Sulfurimonas denitrificans 1 species 532 202747 1 Sulfurimonas autotrophica 0 Sulfuricurvum 2 626 286130 genus 2 0 1 624 148813 species Sulfuricurvum kujiense 1 0 41 Campylobacteraceae 6973 family 72294 75786 1 0 Sulfurospirillum 9 3490 57665 39 genus 0 1 1 Sulfurospirillum cavolei species 525 366522 0 0 3 1366 2618290 no rank 0 species 1581011 375 1 Sulfurospirillum sp. UCH001 Sulfurospirillum sp. SL2-1 1 1986224 534 species 0 species 457 220622 1 Sulfurospirillum sp. JPD-1 0 Sulfurospirillum barnesii 1 387 44674 species 0 0 Sulfurospirillum deleyianum 1 438 65553 species species 66821 288 1 Sulfurospirillum multivorans 0 0 447 194424 species Sulfurospirillum halorespirans 1 0 1 194 62285 genus 1344 Campylobacter 26 0 species 197 15475 1 Campylobacter jejuni 0 522485 180 species Campylobacter avium 1 243 827 species Campylobacter ureolyticus 1 0 1 Campylobacter volucris species 1031542 480 0 28898 261 species Campylobacter helveticus 1 0 species 497724 329 1 Campylobacter subantarcticus 0 1 Campylobacter hominis species 431 76517 0 0 species 715 199 1 Campylobacter concisus 1 Campylobacter pinnipediorum species 556 1965231 0 0 Campylobacter lari 1 201 1028 species 0 Campylobacter iguaniorum 1 1244531 184 species species 488546 355 1 Campylobacter peloridis 0 0 species 195 33353 1 Campylobacter coli no rank 2593542 1113 4 0 0 Campylobacter sp. RM6137 1 1660073 230 species 312 1660074 species Campylobacter sp. RM8964 1 0 0 Campylobacter sp. RM12175 1 244 1660076 species 0 1500960 327 species Campylobacter sp. RM16704 1 0 1 Campylobacter insulaenigrae species 260714 381 200 385 species Campylobacter curvus 1 0 701 824 species Campylobacter gracilis 1 0 0 species 206 662 1 Campylobacter sputorum species 1777 196 1 Campylobacter fetus 0 1 Campylobacter hyointestinalis species 365 198 0 1 Campylobacter lanienae species 75658 1595 0 0 1 Campylobacter cuniculorum species 374106 372 0 5 2321108 3038 no rank 0 2321187 555 genus 1 Arcobacter sp. LPB0137 1 555 1850254 species 0 Arcobacter 3 1684 28196 genus 10 0 1 Arcobacter nitrofigilis 1 644 28199 species 0 0 Arcobacter butzleri 1 1030 28197 species 1 799 2321207 no rank 0 1 Arcobacter sp. L species 799 944547 0 2852 1807140 class 1 Acidithiobacillia 7 0 1 order 31 225057 2851 6 Acidithiobacillales 1 0 1 0 29 family 2820 225058 5 Acidithiobacillaceae 0 1 Acidithiobacillus 4 119977 2791 genus 40 0 160808 812 species Acidithiobacillus ferrivorans 1 species 879 920 1 Acidithiobacillus ferrooxidans 0 Acidithiobacillus caldus 1 1060 33059 species 0 4729 1553900 2 class Oligoflexia 10 0 1 1 0 5 Bdellovibrionales order 10 213481 3397 1 0 family 12 213483 3387 4 Bdellovibrionaceae 7 genus 958 3375 3 Bdellovibrio 1 0 0 3018 959 species Bdellovibrio bacteriovorus 1 0 species 453816 350 1 Bdellovibrio exovorus 4 order 2024979 1330 0 2 Halobacteriovoraceae family 1 1652132 460 1 0 0 1652133 459 genus 1 0 97084 459 species Halobacteriovorax marinus 1 2 Bacteriovoracaceae family 2 870 263369 1 0 1 genus 146784 868 0 species 868 960 1 Bacteriovorax stolpii 0 0 1 2006 580370 class 2 Zetaproteobacteria 6 5 Mariprofundales 11 order 580371 2004 1 0 580372 1993 family 10 Mariprofundaceae 4 0 1 3 Mariprofundus 3 genus 1983 377315 1 0 0 1 Mariprofundus aestuarium species 1148 1921086 1 Mariprofundus ferrinatatus species 1921087 832 0 28216 506354 1260 class Betaproteobacteria 352 0 1 0 2 no rank 33809 1828 Betaproteobacteria bacterium GR16-43 1 1904640 1514 species 0 0 543913 314 species beta proteobacterium CB 1 1 0 44 Nitrosomonadales 278 order 18245 32003 0 2772226 2118 family 4 2 genus 887 1778653 2 Sulfuriferula 1 0 2637784 885 no rank 1 0 Sulfuriferula sp. AH1 1 1985873 885 species 0 27 genus 935200 1231 2 Sulfuricella 1 0 0 Sulfuricella denitrificans 1 649841 1204 species 0 1 Gallionellaceae 5 2343 90627 family 87 1 0 40 genus 1455 314343 2 Sideroxydans species 63745 1415 1 Sideroxydans lithotrophicus 0 1 0 16 genus 96 801 2 Gallionella Gallionella capsiferriformans 1 370405 785 species 0 Thiobacillaceae 3 2008790 1105 family 7 0 1 1 0 2 Thiobacillus 23 genus 919 1098 0 1 Thiobacillus denitrificans species 36861 1075 Methylophilaceae 14 3715 32011 24 family 0 1 Methylophilus 2 16 445 genus 1 0 1 444 2630143 no rank 1 0 0 species 1662285 444 1 Methylophilus sp. TWE2 3 Methylotenera genus 2 359407 593 1 0 0 Methylotenera versatilis 1 1055487 315 species 1 Methylotenera mobilis species 276 359408 0 0 1 621 1679002 5 genus Candidatus Methylopumilus 3 0 1 Candidatus Methylopumilus planktonicus species 253 1581557 species 1581680 363 1 Candidatus Methylopumilus turicensis 0 404 727 genus 11 Methylobacillus 2 0 1 716 405 species Methylobacillus flagellatus 1 0 genus 32 1305 81682 3 Methylovorus 1 0 species 605 266009 1 Methylovorus glucosotrophus 0 no rank 2634027 668 1 0 0 species 887061 668 1 Methylovorus sp. MP688 4996 206379 55 family Nitrosomonadaceae 12 0 1 1 0 8 genus 2061 35798 4 Nitrosospira 0 species 690 1288494 1 Nitrosospira lacus 0 1 Nitrosospira multiformis species 1231 613 Nitrosospira briensis 1 35799 750 species 0 0 1 Nitrosomonas 7 2880 914 genus 26 0 2 696 2609265 no rank 1 Nitrosomonas sp. AL212 species 290 153948 0 0 species 261292 406 1 Nitrosomonas sp. Is79A3 species 44577 429 1 Nitrosomonas ureae 0 0 Nitrosomonas eutropha 1 363 916 species Nitrosomonas communis 1 478 44574 species 0 0 1 Nitrosomonas europaea species 915 888 0 1 3690 2008793 family 52 Sterolibacteriaceae 5 genus 17 378210 1604 2 Methyloversatilis 1 0 1587 2639971 no rank 1 0 1 Methyloversatilis sp. RAC08 species 1587 1842540 0 1 0 genus 60 1054211 2034 2 Sulfuritalea 0 Sulfuritalea hydrogenivorans 1 1974 748811 species Rhodocyclales 22 27129 206389 383 order 0 1 3 Azonexaceae family 31 1562 2008795 1 0 1 0 14 genus 1531 73029 2 Dechloromonas species 1517 259537 1 Dechloromonas aromatica 0 19047 2008794 family 306 Zoogloeaceae 12 0 1 1 0 6 Thauera 254 genus 11332 33057 Thauera humireducens 1 1134435 2107 species 0 2609274 5500 no rank 2 0 1 Thauera sp. MZ1T species 2685 85643 0 2005884 2815 species Thauera sp. K11 1 0 1 Thauera aromatica species 59405 1749 0 0 1 Thauera chlorobenzoica species 96773 1722 1 0 5 Azoarcus 281 genus 12960 7409 0 2 no rank 3965 2629479 species 748247 2072 1 Azoarcus sp. KH32C 0 1 Azoarcus sp. CIB species 198107 1893 0 0 1590 418699 species Azoarcus olearius 1 Azoarcus sp. SY39 1 1573 2067960 species 0 0 1 6137 75787 family 136 Rhodocyclaceae 6 2 Azospira 94 genus 2844 146937 1 0 0 146939 2750 species Azospira oryzae 1 0 75788 1931 no rank 1 0 species 1898103 1931 1 Rhodocyclaceae bacterium 1 0 2 Aromatoleum 13 genus 1226 551759 species 1213 551760 1 Aromatoleum aromaticum 0 0 no rank 2791 119066 11 0 1381133 77 genus 1 1 Candidatus Profftella armatura species 669502 77 0 0 1 809 33055 15 genus Kinetoplastibacterium 6 species 153 233181 1 Kinetoplastibacterium blastocrithidii 0 species 162 994695 1 Candidatus Kinetoplastibacterium galatii 0 0 1 Candidatus Kinetoplastibacterium desouzaii species 173 994692 0 1 Candidatus Kinetoplastibacterium oncopeltii species 132 994696 species 174 33056 1 Candidatus Kinetoplastibacterium crithidii 0 1 0 2 Candidatus Accumulibacter 57 genus 1848 327159 0 1791 327160 species Candidatus Accumulibacter phosphatis 1 genus 189384 28 1 0 0 Candidatus Tremblaya princeps 1 28 189385 species 1301080 29 genus 1 0 species 1160784 29 1 Candidatus Nasuia deltocephalinicola 0 206351 41499 454 order Neisseriales 37 0 1 1 0 23 Neisseriaceae 162 family 20408 481 0 1 Vitreoscilla 3 1718 59 genus 59 0 1 Vitreoscilla filiformis species 1349 63 no rank 310 2627922 1 0 0 1 Vitreoscilla sp. C1 species 96942 310 0 no rank 338 421605 1 0 Neisseriaceae bacterium DSM 100970 1 338 2052837 species 869 1193515 5 genus Snodgrassella 2 0 1 1 Snodgrassella alvi species 1196083 864 0 0 1 Eikenella 2 538 1441 8 genus 0 1 Eikenella corrodens species 1433 539 genus 3 236 71 2 Simonsiella 1 0 0 1 Simonsiella muelleri species 72 233 1 0 12 Neisseria genus 353 482 15644 1 Neisseria sp. 10023 species 1853278 1435 0 0 no rank 2623750 3112 2 Neisseria sp. KEM232 1 655307 2182 species 0 0 Neisseria sp. 10022 1 930 1853276 species 0 Neisseria meningitidis 1 487 3491 species 0 Neisseria sicca 1 755 490 species 0 Neisseria zoodegmatis 1 326523 1115 species 0 Neisseria elongata 1 1043 495 species 1 Neisseria gonorrhoeae species 1323 485 0 0 1 Neisseria lactamica species 1548 486 681 488 species Neisseria mucosa 1 0 28091 788 species Neisseria weaveri 1 0 20637 1499392 family 305 Chromobacteriaceae 13 0 1 0 1 Aquaspirillum 2 2791 187 genus 12 2779 2620219 no rank 1 0 0 species 1938604 2779 1 Aquaspirillum sp. LM1 2683 168470 genus 28 Laribacter 2 0 1 0 1 Laribacter hongkongensis species 2655 168471 no rank 90153 10787 4 0 4 Chromobacterium genus 185 535 10787 1 0 1 2641838 2984 no rank 0 species 2059672 2984 1 Chromobacterium sp. ATCC 53434 0 0 1 Chromobacterium vaccinii species 4460 1108595 Chromobacterium violaceum 1 536 3158 species 0 2 Jeongeupia genus 17 1602 885864 1 0 no rank 1585 2619593 1 0 species 1585 1906741 1 Jeongeupia sp. USM3 0 2 Pseudogulbenkiania 71 genus 568394 2469 1 0 no rank 2642558 2398 1 0 species 748280 2398 1 Pseudogulbenkiania sp. NH8B 0 0 1 Burkholderiales 235 413602 80840 order 4437 family 400 47693 75682 29 Oxalobacteraceae 1 0 0 1 Collimonas 4 202907 7225 genus 131 species 279113 2530 1 Collimonas pratensis 0 Collimonas fungivorans 1 2306 158899 species 0 279058 2258 species Collimonas arenae 1 0 1 0 7 Janthinobacterium 160 genus 10610 29580 55508 1862 species Janthinobacterium agaricidamnosum 1 0 0 species 2203 368607 1 Janthinobacterium svalbardensis no rank 2610881 6385 4 0 0 Janthinobacterium sp. 1_2014MBL_MicDiv 1 1644131 2315 species 0 375286 840 species Janthinobacterium sp. Marseille 1 1 Janthinobacterium sp. LM6 species 2172 1938606 0 0 Janthinobacterium sp. B9-8 1 1236179 1058 species Oxalobacter 2 846 1398 genus 6 0 1 Oxalobacter formigenes 1 1392 847 species 0 0 1 963 12167 653 genus Herbaspirillum 6 species 341045 1736 1 Herbaspirillum hiltneri 0 0 1 no rank 1565 2624150 species 1565 2025949 1 Herbaspirillum sp. meg3 0 Herbaspirillum frisingense 1 92645 3161 species 0 964 2813 species Herbaspirillum seropedicae 1 0 80842 2239 species Herbaspirillum rubrisubalbicans 1 0 333 genus 149698 14535 6 Massilia 1 0 0 Massilia putida 1 2740 1141883 species Massilia sp. B2 1 2532 2045208 species 0 0 2 no rank 2609279 5804 species 2385 1707785 1 Massilia sp. WG5 0 Massilia sp. NR 4-1 1 1678028 3419 species 0 3126 2072590 species Massilia sp. ZMN-3 1 0 genus 68 1358 303379 3 Herminiimonas 1 0 Herminiimonas arsenicoxydans 1 748 204773 species 0 species 1809410 542 1 Herminiimonas arsenitoxidans 0 1 0 family 1162 147069 119060 84 Burkholderiaceae 0 2571159 743 genus 1 species 743 412963 1 Paraburkholderia rhizoxinica 0 1 0 5 Ralstonia 496 genus 48736 18918 species 2470 105219 1 Ralstonia mannitolilytica 0 1 Ralstonia insidiosa species 190721 2864 0 1 Ralstonia pickettii species 3585 329 0 0 1 Ralstonia solanacearum species 9503 305 18377 1822464 genus 332 Paraburkholderia 12 0 1 1578 311230 species Paraburkholderia terrae 1 0 0 species 1528 948107 1 Paraburkholderia sprentiae 0 1 Paraburkholderia phenoliruptrix species 252970 1236 0 species 75105 2504 1 Paraburkholderia caribensis Paraburkholderia aromaticivorans 1 2026199 1974 species 0 0 Paraburkholderia phymatum 1 1826 148447 species 0 species 1819 36873 1 Paraburkholderia xenovorans 0 1 Paraburkholderia hospita species 1413 169430 0 2615204 1181 no rank 1 Paraburkholderia sp. SOS3 1 1181 1926494 species 0 0 species 1647 134537 1 Paraburkholderia fungorum species 261302 1339 1 Paraburkholderia phytofirmans 0 0 1 Cupriavidus 9 106589 24660 800 genus 68895 2556 species Cupriavidus basilensis 1 0 Cupriavidus pinatubonensis 1 2106 248026 species 0 species 3439 367825 1 Cupriavidus sp. USMAA1020 0 0 4641 106590 species Cupriavidus necator 1 species 119219 2368 1 Cupriavidus metallidurans 0 1 Cupriavidus gilardii species 82541 2070 0 0 no rank 6680 2640874 2 Cupriavidus sp. USMAA2-4 1 876364 3435 species 0 0 Cupriavidus sp. USMAHM13 1 3245 1389192 species 10 Pandoraea 344 genus 93217 12922 1 0 1 Pandoraea vervacti species 1583 656178 0 0 1 Pandoraea oxalativorans species 1650 573737 0 93222 1261 species Pandoraea sputorum 1 0 Pandoraea pnomenusa 1 93220 1564 species Pandoraea faecigallinarum 1 656179 1077 species 0 species 93219 1349 1 Pandoraea norimbergensis 0 0 1 Pandoraea apista species 1354 93218 0 1 Pandoraea pulmonicola species 1241 93221 1499 445709 species Pandoraea thiooxydans 1 0 0 1 44013 672 genus 2 Polynucleobacter 4 species 225 1835254 1 Polynucleobacter duraquae 0 1 Polynucleobacter asymbioticus species 223 576611 0 0 Polynucleobacter necessarius 1 576610 222 species 0 1 genus 1827195 1257 0 species 1257 758793 1 Burkholderia sp. RPE64 1 0 genus 3236 68358 32008 41 Burkholderia Burkholderia glumae 1 337 3619 species 0 7 species group 9014 111527 0 species 28450 2407 1 Burkholderia pseudomallei 0 0 1335 342113 species Burkholderia oklahomensis 1 0 Burkholderia sp. MSMB0266 1 772 1637837 species 0 species 1637831 709 1 Burkholderia sp. MSMB617WGS species 744 13373 1 Burkholderia mallei 0 2395 57975 species Burkholderia thailandensis 1 0 Burkholderia sp. MSMB0852 1 652 1637841 species 0 0 1 Burkholderia plantarii species 41899 2155 34187 87882 species group 19 0 0 species 152480 1430 1 Burkholderia ambifaria 0 species 95485 1691 1 Burkholderia stabilis 1 Burkholderia ubonensis species 101571 3349 0 0 Burkholderia diffusa 1 834 488732 species 292 5924 species Burkholderia cepacia 1 0 Burkholderia dolosa 1 152500 898 species 0 1 Burkholderia contaminans species 488447 1193 0 species 2404 87883 1 Burkholderia multivorans 0 0 1503054 1243 species Burkholderia stagnalis 1 0 Burkholderia territorii 1 1503055 741 species 0 1038 265293 species [Pseudomonas] mesoacidophila 1 1207504 1174 species Burkholderia pseudomultivorans 1 0 0 Burkholderia vietnamiensis 1 60552 1541 species Burkholderia seminalis 1 674 488731 species 0 488729 922 species Burkholderia metallica 1 0 0 species 1186 488446 1 Burkholderia latens 1417 482957 species Burkholderia lata 1 0 0 Burkholderia cenocepacia 1 95486 5815 species 1 Burkholderia pyrrocinia species 713 60550 0 species 28095 3528 1 Burkholderia gladioli 0 0 11 no rank 2613784 12619 0 880 1795043 species Burkholderia sp. PAMC 26561 1 1 Burkholderia sp. Bp5365 species 1740162 875 0 0 Burkholderia sp. KJ006 1 1002 416344 species 1121 640512 species Burkholderia sp. CCGE1003 1 0 0 species 1678678 1217 1 Burkholderia sp. HB1 species 886 1468409 1 Burkholderia sp. 2002721687 0 911 1795874 species Burkholderia sp. PAMC 28687 1 0 640510 1206 species Burkholderia sp. CCGE1001 1 0 1 Burkholderia sp. RPE67 species 758796 1551 0 0 species 1417 1740163 1 Burkholderia sp. Bp7605 species 1097668 1553 1 Burkholderia sp. YI23 0 2 80841 4342 no rank 0 Burkholderiales bacterium YL45 1 3481 1834205 species 0 species 861 1469502 1 Burkholderiales bacterium GJ-E10 0 0 1 Comamonadaceae 59 80864 106050 family 1766 2 Candidatus Symbiobacter 10 genus 1436289 989 1 0 0 1436290 979 species Candidatus Symbiobacter mobilis 1 0 genus 2678886 2600 1 Melaminivora sp. SC2-7 1 2116657 2600 species 0 47420 6662 137 genus Hydrogenophaga 4 0 1 0 1506 1763535 species Hydrogenophaga crassostreae 1 0 2 no rank 5019 2610897 0 2083 1842537 species Hydrogenophaga sp. RAC07 1 0 Hydrogenophaga sp. PBC 1 795665 2936 species 2 2749 2490452 genus 0 1458425 1281 species Comamonadaceae bacterium A1 1 0 1458426 1468 species Comamonadaceae bacterium B1 1 0 Diaphorobacter 2 2496 238749 3 genus 0 1 Diaphorobacter polyhydroxybutyrativorans 1 2493 1546149 species 0 genus 12 364316 1918 2 Verminephrobacter 1 0 0 species 364317 1906 1 Verminephrobacter eiseniae 1 0 genus 51 28065 8023 5 Rhodoferax 0 Rhodoferax koreense 1 2525 1842727 species 81479 1691 species Rhodoferax antarcticus 1 0 Rhodoferax ferrireducens 1 1411 192843 species 0 0 species 2345 1484693 1 Rhodoferax saidenbachensis 0 1 Ottowia 3 4040 219181 genus 48 no rank 2645081 1758 1 0 0 1 Ottowia sp. oral taxon 894 species 1658672 1758 0 1 Ottowia sp. KADR8-3 species 2234 2109914 1 0 5 Variovorax genus 218 34072 13684 0 species 2654 436515 1 Variovorax boronicumulans 0 4718 663243 no rank 2 1 Variovorax sp. PAMC 28711 species 1795631 1332 0 3386 2126319 species Variovorax sp. PMC12 1 0 0 1 Variovorax paradoxus species 34073 6094 0 1 13942 80865 genus 489 Delftia 5 0 1 Delftia acidovorans species 3286 80866 3568 180282 species Delftia tsuruhatensis 1 0 0 2 no rank 2613839 6599 Delftia sp. HK171 1 1920191 3002 species 0 1 Delftia sp. Cs1-4 species 3597 742013 0 1690 352450 21 genus Simplicispira 2 0 1 1669 2109915 species Simplicispira sp. SC1-8 1 0 genus 15 5142 52972 3 Polaromonas 1 0 0 2560 2638319 no rank 1 Polaromonas sp. JS666 1 2560 296591 species 0 0 1 Polaromonas naphthalenivorans species 216465 2567 Comamonas 4 283 8546 genus 136 0 1 1 Comamonas serinivorans species 2611 1082851 0 Comamonas testosteroni 1 285 3974 species 0 0 225992 1825 species Comamonas kerstersii 1 1 0 genus 34 1649468 2915 2 Melaminivora no rank 2641902 2881 1 0 0 2881 2109913 species Melaminivora sp. SC2-9 1 3 Limnohabitans 5 genus 1382 665874 1 0 0 2 1377 2626134 no rank 0 species 923 1678128 1 Limnohabitans sp. 63ED37-2 1 Limnohabitans sp. 103DPR2 species 454 1678129 0 1 0 genus 80 174951 5031 2 Ramlibacter 0 Ramlibacter tataouinensis 1 4951 94132 species 0 1 Acidovorax 9 12916 19213 genus 698 0 9404 2684926 no rank 4 0 2464 358220 species Acidovorax sp. KKS102 1 0 1 Acidovorax sp. T1 species 1858609 2067 0 species 1842533 2353 1 Acidovorax sp. RAC01 2520 232721 species Acidovorax sp. JS42 1 0 0 80869 2353 species Acidovorax citrulli 1 0 species 553814 1948 1 Acidovorax sp. NA3 0 species 721785 2439 1 Acidovorax ebreus 0 Acidovorax avenae 1 80867 2371 species Alicycliphilus 2 3262 201096 genus 10 0 1 1 Alicycliphilus denitrificans species 179636 3252 0 17 no rank 23067 224471 0 0 1 Leptothrix 2 2587 88 61 genus species 2526 34029 1 Leptothrix cholodnii 0 1 0 2 Rhizobacter 124 genus 212743 3138 0 species 3014 946333 1 Rhizobacter gummiphilus 86 genus 3350 93681 2 Roseateles 1 0 0 3264 76731 species Roseateles depolymerans 1 2530 65047 genus 186 Mitsuaria 2 0 1 1 no rank 2648776 2344 0 0 2344 1658665 species Mitsuaria sp. 7 1 0 1 316612 1996 genus 60 Methylibium 2 1 Methylibium petroleiphilum species 1936 105560 0 1 0 2 Thiomonas genus 40 32012 2528 species 2488 926 1 Thiomonas intermedia 0 66 genus 318147 1871 2 Paucibacter 1 0 0 no rank 1805 2642959 1 0 species 1768242 1805 1 Paucibacter sp. KCTC 42545 0 [Polyangium] brachysporum 1 413882 2134 species Rubrivivax 2 2933 28067 234 genus 0 1 0 species 2699 28068 1 Rubrivivax gelatinosus 1 0 43 Alcaligenaceae 612 family 506 80944 0 1 genus 1100891 337 0 species 337 643674 1 Paenalcaligenes hominis Bordetella 17 37115 517 1433 genus 0 1 519 2479 species Bordetella parapertussis 1 0 0 1 Bordetella petrii species 94624 2447 0 463024 2368 species Bordetella genomosp. 6 1 species 2207 520 1 Bordetella pertussis 0 Bordetella genomosp. 13 1 463040 2230 species 0 2506 103855 species Bordetella hinzii 1 0 0 4338 518 species Bordetella bronchiseptica 1 0 1 Bordetella flabilis species 1664 463014 1 Bordetella genomosp. 9 species 1416803 1656 0 species 463025 2728 1 Bordetella bronchialis 0 1 2119 2630031 no rank 0 0 1697043 2119 species Bordetella sp. H567 1 species 123899 2023 1 Bordetella trematum 0 0 1 Bordetella avium species 521 1250 1 Bordetella genomosp. 8 species 2276 1416806 0 species 2446 1331258 1 Bordetella pseudohinzii 0 0 species 945 35814 1 Bordetella holmesii 2 Pusillimonas 6 genus 305976 1343 1 0 0 1337 2640016 no rank 1 1007105 1337 species Pusillimonas sp. T7-7 1 0 3 Advenella genus 7 290425 2254 1 0 0 Advenella kashmirensis 1 1084 310575 species 0 302406 1163 species Advenella mimigardefordensis 1 6 genus 538 29574 3 Taylorella 1 0 0 271 84590 species Taylorella asinigenitalis 1 261 29575 species Taylorella equigenitalis 1 0 0 1 Alcaligenes 2 507 2737 genus 18 species 2719 511 1 Alcaligenes faecalis 0 1 0 genus 1020 29745 222 6 Achromobacter 0 217203 4686 species Achromobacter spanius 1 0 Achromobacter insolitus 1 2681 217204 species 0 1 no rank 2626865 3423 0 Achromobacter sp. AONIH1 1 1758194 3423 species 0 11278 85698 species Achromobacter xylosoxidans 1 0 6657 32002 species Achromobacter denitrificans 1 1 0 2 Orrella 63 genus 1921582 2776 1851544 2713 species Orrella dioscoreae 1 0 1 0 2 Basilea genus 10 390 1472344 1 Basilea psittacipulmonis species 1472345 380 0 Oligella 2 90243 520 1 genus 0 1 0 1 Oligella urethralis species 90245 519 0 1 Castellaniella 2 359336 2577 132 genus 0 75697 2445 species Castellaniella defragrans 1 1 0 879 Gammaproteobacteria 2495 class 974105 1236 0 1 135614 92208 order 1046 Xanthomonadales 54 Rhodanobacteraceae 14 1775411 16614 family 147 0 1 28 genus 2413 75309 2 Rhodanobacter 1 0 1 Rhodanobacter denitrificans species 666685 2385 0 0 genus 1008 2233801 1 Xanthomonadales bacterium D13 1 1008 2021234 species 0 2 Frateuria 47 genus 70411 1650 1 0 81475 1603 species Frateuria aurantia 1 0 Luteibacter 2 1628 242605 11 genus 0 1 0 Luteibacter rhizovicinus 1 242606 1617 species 189 genus 7539 231454 4 Dyella 1 0 0 Dyella japonica 1 2812 231455 species 0 species 1379159 2094 1 Dyella jiangningensis Dyella thiooxydans 1 445710 2444 species 0 0 1 2229 323413 genus 18 Dokdonella 2 0 1 Dokdonella koreensis species 2211 323415 1 0 family 857 32033 74548 39 Xanthomonadaceae 1 0 3 Pseudoxanthomonas genus 107 83618 5285 415229 1717 species Pseudoxanthomonas spadix 1 0 0 1 Pseudoxanthomonas suwonensis species 314722 3461 5 Lysobacter 119 genus 9210 68 1 0 1972 84531 species Lysobacter antibioticus 1 0 0 2105 262324 species Lysobacter gummosus 1 0 Lysobacter enzymogenes 1 69 2173 species 0 1 Lysobacter capsici species 435897 2841 1 0 17 Xanthomonas 1707 genus 338 29202 0 1 Xanthomonas perforans species 442694 1515 0 1 Xanthomonas sacchari species 2224 56458 0 species 843 29447 1 Xanthomonas albilineans 0 1205 1985254 species Xanthomonas phaseoli 1 0 56460 1598 species Xanthomonas vesicatoria 1 species 48664 1109 1 Xanthomonas fragariae 0 Xanthomonas vasicola 1 1034 56459 species 0 species 2508 343 1 Xanthomonas translucens 0 0 56454 1503 species Xanthomonas hortorum 1 366650 1091 species Xanthomonas alfalfae 1 0 0 2 species group 4949 643453 0 1 Xanthomonas citri species 3472 346 Xanthomonas fuscans 1 1477 366648 species 0 0 990 456327 species Xanthomonas euvesicatoria 1 339 3891 species Xanthomonas campestris 1 0 1 Xanthomonas oryzae species 2268 347 0 0 1 Xanthomonas axonopodis species 53413 767 1 0 genus 5 83614 1482 2 Luteimonas 0 1477 2006110 species Luteimonas sp. 100111 1 Stenotrophomonas 9 40323 27644 697 genus 0 1 0 species 1533 83617 1 Stenotrophomonas nitritireducens species 216778 2222 1 Stenotrophomonas rhizophila 0 0 7085 196198 no rank 4 0 Stenotrophomonas sp. KCTC 12332 1 1793721 1536 species 1 Stenotrophomonas sp. WZN-1 species 1766 2005046 0 0 1827305 1669 species Stenotrophomonas sp. MYb57 1 Stenotrophomonas sp. LM091 1 1904944 2114 species 0 0 Stenotrophomonas acidaminiphila 1 3726 128780 species 1 12381 995085 species group 0 1 Stenotrophomonas maltophilia species 40324 12381 0 0 1 868 2370 2 genus Xylella 2 Xylella fastidiosa 1 866 2371 species 0 1934945 2137 66 order Immundisolibacterales 4 0 1 family 33 1934946 2071 3 Immundisolibacteraceae 1 0 1 0 2 Immundisolibacter genus 12 1934947 2038 0 Immundisolibacter cernigliae 1 2026 1810504 species Nevskiales 4 1775403 966 2 order 0 1 2 family 956 2689614 0 469322 956 16 genus Steroidobacter 2 0 1 0 1 Steroidobacter denitrificans species 465721 940 0 8 568386 family Sinobacteraceae 1 0 1 135624 63336 414 order Aeromonadales 29 0 1 84642 62922 family 503 Aeromonadaceae 28 Zobellella 2 3238 347533 genus 18 0 1 0 3220 347534 species Zobellella denitrificans 1 0 1 43947 1008 genus 14 Tolumonas 2 0 species 994 43948 1 Tolumonas auensis 0 1 988 225143 genus 9 Oceanisphaera 3 Oceanisphaera profunda 1 1416627 677 species 0 1903694 302 species Oceanisphaera sp. AMac2203 1 0 18 Aeromonas 3272 genus 642 54162 1 0 1 Aeromonas media species 1746 651 0 652 2324 species Aeromonas schubertii 1 0 0 species 948519 2316 1 Aeromonas rivipollensis 0 1 Aeromonas salmonicida species 3617 645 0 species 2413 196024 1 Aeromonas dhakensis 1 Aeromonas veronii species 5261 654 0 0 2423 558964 species Aeromonas aquatica 1 0 species 12690 644 1 Aeromonas hydrophila 257493 16475 no rank 8 0 0 1627 1636608 species Aeromonas sp. ASNIH3 1 1 Aeromonas sp. ASNIH7 species 1920107 2545 0 0 1 Aeromonas sp. CU5 species 2033033 2415 0 1 Aeromonas sp. ASNIH1 species 1391 1636606 Aeromonas sp. ASNIH2 1 1773 1636607 species 0 0 Aeromonas sp. CA23 1 2298 2033032 species 0 Aeromonas sp. ASNIH4 1 2473 1636609 species 0 species 1953 1758179 1 Aeromonas sp. ASNIH5 Aeromonas caviae 1 648 1625 species 0 40 genus 3023 129577 2 Oceanimonas 1 0 0 no rank 2983 2636315 1 0 2983 511062 species Oceanimonas sp. GK1 1 1 0 28 Cellvibrionales 94 order 1706369 14175 5 Microbulbiferaceae family 15 1706373 3911 1 0 48073 3896 24 genus Microbulbifer 4 0 1 0 260552 1056 species Microbulbifer agarilyticus 1 0 species 1592 1769779 1 Microbulbifer aggregans 0 Microbulbifer thermotolerans 1 1224 252514 species 0 1 1910 1706372 family 30 Halieaceae 4 0 1 1217416 1880 genus 35 Halioglobus 3 0 species 932 930806 1 Halioglobus pacificus 0 Halioglobus japonicus 1 913 930805 species family 22 6666 1706371 11 Cellvibrionaceae 1 0 genus 833 316625 1 0 0 species 833 86304 1 Saccharophagus degradans 1 0 genus 18 808 2425 2 Teredinibacter 2426 790 species Teredinibacter turnerae 1 0 genus 2036021 441 1 0 441 1737490 species Agarilytica rhodophyticola 1 0 0 1 10 3139 genus 35 Cellvibrio 4 0 2 no rank 2624793 2022 1987723 1296 species Cellvibrio sp. PSBB006 1 0 0 species 1945512 726 1 Cellvibrio sp. PSBB023 species 155077 1082 1 Cellvibrio japonicus 0 1 0 genus 1 1423 447467 2 Simiduia 1422 447471 species Simiduia agarivorans 1 0 0 1 1594 1706375 family 34 Spongiibacteraceae 7 Oceanicoccus 2 1084558 624 8 genus 0 1 species 716816 616 1 Oceanicoccus sagamiensis 0 1 0 genus 8 498 1434050 2 Zhongshania Zhongshania aliphaticivorans 1 1470434 490 species 0 1 0 genus 11 630749 438 2 Spongiibacter no rank 2631504 427 1 0 1620392 427 species Spongiibacter sp. IMCC21906 1 0 1240482 922 order 5 0 0 1 Orbaceae 5 1240483 922 family 17 Gilliamella 2 333 1193503 genus 3 0 1 0 species 1196095 330 1 Gilliamella apicola Frischella 2 1335631 572 3 genus 0 1 0 species 1267021 569 1 Frischella perrara 1 0 1 order 337 135615 3 Cardiobacteriales 1 0 2 Cardiobacteriaceae family 2 868 336 334 869 genus 1 0 0 1 Dichelobacter nodosus species 870 334 1 0 68 Oceanospirillales order 658 135619 47572 Alcanivoracaceae 9 224372 7322 107 family 0 1 genus 8 1125 2025617 2 Ketobacter 1 0 0 Ketobacter alkanivorans 1 1917421 1117 species 0 1 59753 6090 genus 99 Alcanivorax 6 1 476 2638842 no rank 0 0 species 1113728 476 1 Alcanivorax sp. NBRC 101098 Alcanivorax pacificus 1 1810 1306787 species 0 Alcanivorax xenomutans 1 1094342 1660 species 0 Alcanivorax borkumensis 1 59754 437 species 0 species 285091 1608 1 Alcanivorax dieselolei 0 1 0 92 family 5173 135620 12 Oceanospirillaceae 1 0 13 genus 896 1537406 2 Bacterioplanes 0 1 Bacterioplanes sanyensis species 1249553 883 357 188907 genus 5 Oleispira 2 0 1 352 188908 species Oleispira antarctica 1 0 1839 48075 4 genus Marinobacterium 2 0 1 0 1 Marinobacterium aestuarii species 1821621 1835 1 genus 399 187492 0 0 species 399 187493 1 Thalassolituus oleivorans 1 0 genus 18 1590 28253 4 Marinomonas 196814 393 no rank 1 0 0 species 393 400668 1 Marinomonas sp. MWYL1 0 Marinomonas posidonica 1 936476 564 species 0 615 119864 species Marinomonas mediterranea 1 747 191033 2 family Oleiphilaceae 3 0 1 2 Oleiphilus 3 genus 745 141450 1 0 0 742 141451 species Oleiphilus messinensis 1 1371 224379 family 1 Hahellaceae 3 0 1 0 1 158481 1370 genus 2 Hahella 2 1 Hahella chejuensis species 1368 158327 0 1 0 30 Halomonadaceae family 361 28256 29086 genus 5 42054 1437 2 Chromohalobacter 1 0 1 Chromohalobacter salexigens species 1432 158080 0 2191 404432 genus 97 Salinicola 2 0 1 2094 1771309 species Salinicola tamaricis 1 0 no rank 114403 184 3 0 0 genus 1495768 81 1 0 1495769 81 species Candidatus Evansia muelleri 1 1 87 235572 genus 0 91844 87 species Candidatus Portiera aleyrodidarum 1 0 0 1 16 114185 genus 1 Candidatus Carsonella ruddii species 114186 16 0 0 1 2745 18095 genus 313 Halomonas 15 0 no rank 8254 2609666 8 0 Halomonas sp. 'Soap Lake #6' 1 817 1949203 species Halomonas sp. GT 1 1971364 478 species 0 0 1610576 1100 species Halomonas sp. R57-5 1 0 610 1504981 species Halomonas sp. KO116 1 0 1118153 454 species Halomonas sp. GFAJ-1 1 1 Halomonas sp. 'Soap Lake #7' species 1962264 817 0 0 Halomonas sp. 1513 1 1883416 2360 species 0 species 2136172 1618 1 Halomonas sp. SF2003 0 Halomonas campaniensis 1 213554 556 species 0 1349 115561 species Halomonas hydrothermalis 1 0 Halomonas aestuarii 1 1897729 2160 species 2801 475662 species Halomonas beimenensis 1 0 0 species 1142 1178482 1 Halomonas huangheensis 0 Halomonas chromatireducens 1 1520 507626 species Halotalea 2 376488 1694 156 genus 0 1 species 376489 1538 1 Halotalea alkalilenta 0 1 0 2 Cobetia genus 25 1867 204286 0 Cobetia marina 1 28258 1842 species 0 1 3257 504090 21 genus Kushneria 3 157779 1408 species Kushneria marisflavi 1 0 0 698828 1828 species Kushneria konosiri 1 1535 1920240 family 59 Kangiellaceae 6 0 1 0 1 1476 261963 45 genus Kangiella 5 0 species 261964 372 1 Kangiella koreensis 1 Kangiella sediminilitoris species 286 1144748 0 0 527 1561924 species Kangiella profundi 1 0 914150 246 species Kangiella geojedonensis 1 255527 1680 7 family Saccharospirillaceae 4 0 1 0 1 genus 648 230494 Reinekea forsetii 1 648 1336806 species 0 0 1 Gynuella 2 1025 1445504 genus 8 1 Gynuella sunshinyii species 1017 1445505 0 no rank 3285 33811 2 0 0 83406 1547 species gamma proteobacterium HdN1 1 0 endosymbiont of unidentified scaly snail isolate Monju 1 1738 1248727 species 0 1 16714 135625 34 order Pasteurellales 31 Pasteurellaceae 30 16680 712 family 775 0 1 1 0 genus 40 75984 2278 4 Mannheimia 1 2645054 447 no rank 0 0 1 Mannheimia sp. USDA-ARS-USMARC-1261 species 1432056 447 1 Mannheimia varigena species 85404 1173 0 0 1 Mannheimia haemolytica species 75985 618 2 Basfia genus 3 704 697331 1 0 0 1 [Mannheimia] succiniciproducens species 701 157673 1 0 genus 6 155493 680 2 Gallibacterium 1 Gallibacterium anatis species 750 674 0 0 1 2094023 818 genus 2 Glaesserella 2 Glaesserella parasuis 1 816 738 species 0 703 214906 genus 1 0 0 Histophilus somni 1 731 703 species 1 0 2 genus 745 1541 3 Pasteurella 0 species 754 267 1 Pasteurella dagmatis 1 Pasteurella multocida species 747 1272 0 Haemophilus 6 3133 724 11 genus 0 1 1 2609962 220 no rank 0 0 Haemophilus sp. oral taxon 036 1 712310 220 species 764 729 species Haemophilus parainfluenzae 1 0 0 1 Haemophilus influenzae species 727 1164 0 455 249188 species Haemophilus pittmaniae 1 1 [Haemophilus] ducreyi species 519 730 0 2652 713 genus 52 Actinobacillus 5 0 1 1 Actinobacillus suis species 446 716 0 644 718 species Actinobacillus equuli 1 0 0 Actinobacillus succinogenes 1 655 67854 species species 715 855 1 Actinobacillus pleuropneumoniae 0 1 0 3 Aggregatibacter genus 78 416916 1915 0 species 679 714 1 Aggregatibacter actinomycetemcomitans Aggregatibacter aphrophilus 1 732 1158 species 0 0 1 1481 476528 genus 0 1 Bibersteinia trehalosi species 47735 1481 339988 91347 order 1856 Enterobacterales 241 0 1 0 1 12496 1903414 138 family Morganellaceae 21 2 Morganella 35 genus 2640 581 1 0 0 1 Morganella morganii species 2605 582 1640 583 36 genus Proteus 3 0 1 Proteus vulgaris 1 585 680 species 0 0 Proteus mirabilis 1 924 584 species 626 3687 21 genus Xenorhabdus 6 0 1 0 species 908 628 1 Xenorhabdus nematophila 0 40576 1000 species Xenorhabdus bovienii 1 540 40577 species Xenorhabdus poinarii 1 0 0 species 351679 492 1 Xenorhabdus hominickii 1 Xenorhabdus doucetiae species 351671 726 0 0 155 637 genus 1 Arsenophonus symbiont of Lipoptena fortisetosa 1 634113 155 species 0 0 1 Photorhabdus 4 29487 1980 genus 18 0 Photorhabdus temperata 1 570 574560 species 0 species 291112 782 1 Photorhabdus asymbiotica 0 1 Photorhabdus luminescens species 610 29488 1 0 12 genus 586 2256 4 Providencia 522 587 species Providencia rettgeri 1 0 0 588 1119 species Providencia stuartii 1 0 species 126385 603 1 Providencia alcalifaciens Erwiniaceae 27 31470 1903409 110 family 0 1 0 2 2100764 4310 genus 0 species 2198 665914 1 Pantoea gaviniae 0 Pantoea calida 1 665913 2112 species 1 51228 199 genus 0 0 51229 199 species Wigglesworthia glossinidia 1 11 Pantoea genus 756 16049 53335 1 0 553 1419 species Pantoea ananatis 1 0 0 species 470934 2533 1 Pantoea vagans Pantoea alhagi 1 1891675 1347 species 0 1 Pantoea stewartii species 1418 66269 0 Candidatus Pantoea carbekii 1 184 1235990 species 0 no rank 4580 2630326 3 0 1 Pantoea sp. PSNIH1 species 1341 1484158 0 0 1 Pantoea sp. PSNIH2 species 1484157 1721 0 Pantoea sp. At-9b 1 592316 1518 species 0 1 species group 1654067 2707 0 Pantoea agglomerans 1 2707 549 species 0 species 1076550 1105 1 Pantoea rwandensis Buchnera 2 32199 1716 4 genus 0 1 0 species 1712 9 1 Buchnera aphidicola 0 1 774 82986 genus 9 Tatumella 2 Tatumella citrea 1 765 53336 species 0 1 0 8 Erwinia 256 genus 551 8312 0 Erwinia gerundensis 1 1619313 1642 species 1 Erwinia billingiae species 182337 2363 0 0 1 no rank 989 2622719 989 215689 species Erwinia sp. Ejp617 1 0 1 Erwinia tasmaniensis species 338565 1330 0 0 species 729 552 1 Erwinia amylovora 1922217 151 species Candidatus Erwinia sp. ErCipseudotaxifoliae 1 0 0 852 79967 species Erwinia pyrifoliae 1 family 323 1903411 59331 39 Yersiniaceae 1 0 0 1 2004 929812 genus 1 Gibbsiella 2 0 2003 929813 species Gibbsiella quercinecans 1 1 Rouxiella genus 1565532 63 0 genus 173 629 11539 13 Yersinia 1 0 0 Yersinia kristensenii 1 734 28152 species 0 species 707 29483 1 Yersinia aldovae 0 Yersinia ruckeri 1 1151 29486 species 1 Yersinia rohdei species 29485 670 0 0 1 Yersinia frederiksenii species 29484 2255 species 631 465 1 Yersinia intermedia 0 455 2653513 no rank 1 0 1 Yersinia sp. FDAARGOS_228 species 455 1839800 0 0 species group 2172 1649845 3 0 549 632 species Yersinia pestis 1 970 633 species Yersinia pseudotuberculosis 1 0 0 1 Yersinia similis species 367190 653 263819 689 species Yersinia aleksiciae 1 0 0 630 2068 species Yersinia enterocolitica 1 1 0 genus 1932 39418 613 16 Serratia Serratia rubidaea 1 2114 61652 species 0 species 82996 3016 1 Serratia plymuthica 0 0 47917 3271 species Serratia fonticola 1 0 no rank 14226 2647522 8 1897 1327989 species Serratia sp. FS14 1 0 species 1334 768493 1 Serratia sp. AS13 0 0 1642 104623 species Serratia sp. ATCC 39006 1 species 488142 2031 1 Serratia sp. SCBI 0 1 Serratia sp. MYb239 species 2033438 1833 0 1 Serratia sp. AS12 species 1334 768490 0 1758196 2061 species Serratia sp. SSNIH1 1 0 0 species 671990 2094 1 Serratia sp. FGI94 0 1 Serratia marcescens species 615 9202 0 species 61651 2645 1 Serratia ficaria 0 1 Serratia liquefaciens species 1911 614 1 Serratia proteamaculans species 28151 1101 0 0 1 34037 4664 genus 73 Rahnella 4 0 no rank 2635087 2904 2 0 Rahnella sp. Y9602 1 1587 741091 species 0 Rouxiella sp. ERMR1:05 1 1805933 1317 species species 34038 1687 1 Rahnella aquatilis 0 1745211 1320 genus 29 Chania 2 0 1 0 Chania multitudinisentens 1 1291 1639108 species 94 family 28250 1903410 20 Pectobacteriaceae 1 0 204037 12074 genus 415 Dickeya 6 0 1 1 Dickeya dianthicola species 1715 204039 0 species 4016 1089444 1 Dickeya solani 0 0 1 Dickeya fangzhongdai species 1939 1778540 204042 2152 species Dickeya zeae 1 0 0 204038 1837 species Dickeya dadantii 1 1 0 genus 21 1648 71655 2 Brenneria species 1109412 1627 1 Brenneria goodwinii 0 Pectobacterium 6 11229 122277 536 genus 0 1 0 1 Pectobacterium atrosepticum species 1206 29471 Pectobacterium polaris 1 2268 2042057 species 0 1 Pectobacterium wasabiae species 821 55208 0 0 952 1905730 species Pectobacterium parmentieri 1 0 554 5446 species Pectobacterium carotovorum 1 genus 131 3205 84565 5 Sodalis 1 0 Candidatus Sodalis pierantonius 1 792 1486991 species 0 0 63612 910 species Sodalis glossinidius 1 Sodalis praecaptivus 1 1239307 1238 species 0 Sodalis endosymbiont of Henestaris halophilus 1 134 1929246 species 0 1 0 family 50 1903412 15976 14 Hafniaceae 1 0 2 Obesumbacterium genus 37 936 82982 899 82983 species Obesumbacterium proteus 1 0 0 1 Hafnia 3 568 2143 genus 59 1 Hafnia alvei species 569 1636 0 0 2621980 448 no rank 1 0 1 Hafnia sp. CBA7124 species 448 1848580 1 0 629 genus 12847 635 8 Edwardsiella 0 2 no rank 3207 2676541 0 Edwardsiella sp. EA181011 1 1802 1578828 species 0 species 1405 1650654 1 Edwardsiella sp. LADL05-105 0 Edwardsiella hoshinae 1 1163 93378 species 1890 1263550 species Edwardsiella piscicida 1 0 species 1573 67780 1 Edwardsiella ictaluri 0 0 1 Edwardsiella tarda species 636 2988 1397 1821960 species Edwardsiella anguillarum 1 0 1 0 115 Enterobacteriaceae family 1841 187979 543 67 genus 160674 5973 3 Raoultella 1 0 0 Raoultella ornithinolytica 1 4229 54291 species 0 1 Raoultella planticola species 1677 575 0 1 Citrobacter 14 544 22989 899 genus 1 Citrobacter koseri species 1705 545 0 species 1483 67825 1 Citrobacter rodentium 0 0 966 67824 species Citrobacter farmeri 1 2 2644389 1962 no rank 0 Citrobacter sp. CFNIH10 1 1920110 911 species 0 1 Citrobacter sp. FDAARGOS_156 species 1051 1702170 0 0 1 Citrobacter amalonaticus species 3544 35703 0 species group 12430 1344959 7 species 1809 67827 1 Citrobacter werkmanii 0 Citrobacter freundii complex sp. CFNIH3 1 2077147 1026 species 0 1 Citrobacter freundii complex sp. CFNIH2 species 2066049 1115 0 0 species 4716 546 1 Citrobacter freundii 0 species 2068 57706 1 Citrobacter braakii Citrobacter freundii complex sp. CFNIH9 1 2077149 845 species 0 1 Citrobacter freundii complex sp. CFNIH4 species 851 2077148 0 no rank 1871 191675 16 0 0 clade 84563 1871 16 1682492 190 genus 1 0 1 Candidatus Tachikawaea gelatinosa species 190 1410383 0 0 3 clade 146507 632 0 species 274 1199245 1 secondary endosymbiont of Ctenarytaina eucalypti 0 1 genus 247 568987 0 species 247 138072 1 Candidatus Hamiltonella defensa 0 134287 111 species secondary endosymbiont of Heteropsylla cubana 1 0 7 84564 546 clade 1 0 7 Candidatus Blochmannia genus 10 546 203804 species 203907 110 1 Candidatus Blochmannia floridanus 0 0 species 251535 92 1 Candidatus Blochmannia vafer 2 no rank 160 711328 0 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 1 105 1505597 species 0 55 1505596 species Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 1 0 1 Candidatus Blochmannia pennsylvanicus species 101534 68 0 1 Candidatus Blochmannia chromaiodes species 106 251542 0 0 genus 1906661 117 1 1 Candidatus Gullanella endobia species 1070130 117 0 1 199891 80 clade 0 0 secondary endosymbiont of Trabutina mannipara 1 80 1835721 species 0 1 63 1906660 genus 63 1778264 species Candidatus Mikella endobia 1 0 genus 131 1906657 1 0 0 species 1778262 131 1 Candidatus Doolittlea endobia 1 genus 1906659 112 0 0 1778263 112 species Candidatus Hoaglandella endobia 1 5 36866 7259 no rank 0 Enterobacteriaceae bacterium ENNIH3 1 1412 1920128 species 0 0 1 Enterobacteriaceae bacterium strain FGI 57 species 1291 693444 0 species 1816 891974 1 Plautia stali symbiont 1 Enterobacteriaceae bacterium ENNIH2 species 1410 1920109 0 0 species 2066051 1330 1 Enterobacteriaceae bacterium ENNIH1 1 157 409304 genus 0 species 157 168169 1 Candidatus Ishikawaella capsulata 0 1 0 genus 1418 38766 570 10 Klebsiella 0 244366 4114 species Klebsiella variicola 1 0 1 Klebsiella quasivariicola species 1848 2026240 species 2867 1463165 1 Klebsiella quasipneumoniae 0 Klebsiella aerogenes 1 548 2870 species 0 4901 2608929 no rank 2 0 0 species 1934254 2900 1 Klebsiella sp. M5al 2001 1905288 species Klebsiella sp. LTGPAF-6F 1 0 species 7173 571 1 Klebsiella oxytoca 0 0 species 573 9592 1 Klebsiella pneumoniae 0 species 3983 1134687 1 Klebsiella michiganensis 0 1 1330547 7109 genus 25 Kosakonia 5 1 Kosakonia cowanii species 208223 2374 0 0 species 497725 1257 1 Kosakonia oryzae 1 Kosakonia sacchari species 1158459 1702 0 species 1751 283686 1 Kosakonia radicincitans 0 16469 561 genus 107 Escherichia 5 0 1 Escherichia fergusonii 1 872 564 species 0 0 208962 1708 species Escherichia albertii 1 0 species 562 12856 1 Escherichia coli 1 Escherichia marmotae species 926 1499973 0 0 579 1502 genus 1 0 species 61648 1502 1 Kluyvera intermedia 2 Shimwellia 2 genus 1978 1335483 1 0 563 1976 species Shimwellia blattae 1 0 0 1 158483 4773 genus 12 Cedecea 2 Cedecea neteri 1 158822 4761 species 0 Cronobacter 8 11128 413496 282 genus 0 1 1 Cronobacter condimenti species 1254 1163710 0 535744 1459 species Cronobacter universalis 1 0 0 1 Cronobacter muytjensii species 2094 413501 Cronobacter dublinensis 1 413497 1562 species 0 0 Cronobacter malonaticus 1 1169 413503 species 0 species 2076 28141 1 Cronobacter sakazakii 0 species 1232 413502 1 Cronobacter turicensis 72 genus 8131 590 3 Salmonella 1 0 Salmonella bongori 1 54736 1052 species 0 0 1 Salmonella enterica species 28901 7007 0 1 65 1048757 genus 0 Candidatus Moranella endobia 1 65 1048758 species 4 Leclercia 293 genus 5711 83654 1 0 0 no rank 3936 2627398 2 0 Leclercia sp. LSNIH1 1 1920114 2330 species Leclercia sp. LSNIH3 1 1920116 1606 species 0 1 Leclercia adecarboxylata species 1482 83655 0 1 0 genus 2255 38667 547 22 Enterobacter 0 9 2608935 9957 no rank 1 Enterobacter sp. R4-368 species 1821 1166130 0 species 1630 1914861 1 Enterobacter sp. SA187 0 species 559 1977566 1 Enterobacter sp. Crenshaw 0 0 1002 2051905 species Enterobacter sp. CRENT-193 1 399742 1074 species Enterobacter sp. 638 1 0 0 1868135 762 species Enterobacter sp. HK169 1 species 1827481 1167 1 Enterobacter sp. ODB01 0 Enterobacter sp. FY-07 1 1692238 1345 species 0 Enterobacter sp. E20 1 1560339 597 species 0 0 12 species group 354276 26455 0 2618 2757714 no rank 3 0 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 1 2077137 1107 species 1 Enterobacter cloacae complex sp. ECNIH7 species 656 1915310 0 Enterobacter cloacae complex bacterium 1 2027919 855 species 0 0 550 10451 species Enterobacter cloacae 1 0 species 1812935 997 1 Enterobacter cloacae complex 'Hoffmann cluster IV' 0 1 Enterobacter ludwigii species 299767 947 species 3398 158836 4973 3 Enterobacter hormaechei 1 0 0 subspecies 1812934 881 1 Enterobacter cloacae complex 'Hoffmann cluster III' 0 Enterobacter xiangfangensis 1 694 1296536 subspecies 0 species 1205 208224 1 Enterobacter kobei 0 1 Enterobacter cancerogenus species 69218 1328 Enterobacter asburiae 1 3936 61645 species 0 0 1 2574 620 104 genus Shigella 4 622 1216 species Shigella dysenteriae 1 0 623 646 species Shigella flexneri 1 0 1 no rank 608 2629414 0 0 1 Shigella sp. PAMC 28760 species 1813821 608 1 401618 138 genus 0 species 401619 138 1 Candidatus Riesia pediculicola 0 3 Pluralibacter 30 genus 5591 1330546 1 0 61647 3539 species Pluralibacter gergoviae 1 0 1 [Enterobacter] lignolyticus species 1334193 2022 0 1 0 4 Lelliottia 45 genus 1330545 5287 0 species 1907578 1238 1 Lelliottia jeotgali 0 species 2588 61646 1 Lelliottia amnigena 0 Lelliottia nimipressuralis 1 69220 1416 species 0 no rank 451511 1753 2 0 1 702 1753 21 genus Plesiomonas 2 0 Plesiomonas shigelloides 1 1732 703 species 2 family 1903416 877 0 0 1 877 82984 18 genus Pragia 2 1 Pragia fontium species 859 82985 0 0 1 135622 50557 order 249 Alteromonadales 105 3 Ferrimonadaceae family 9 267892 1898 1 0 46 genus 44011 1889 2 Ferrimonas 1 0 0 44012 1843 species Ferrimonas balearica 1 0 1 Shewanellaceae 25 12875 267890 family 36 1 0 24 Shewanella genus 230 22 12839 Shewanella sediminis 1 610 271097 species 0 Shewanella oneidensis 1 460 70863 species 0 1 Shewanella baltica species 62322 1212 0 0 1 Shewanella amazonensis species 60478 1478 483 24 species Shewanella putrefaciens 1 0 0 60961 367 species Shewanella woodyi 1 0 56812 331 species Shewanella frigidimarina 1 1 Shewanella marisflavi species 260364 481 0 1 Shewanella halifaxensis species 517 271098 0 630 93973 species Shewanella japonica 1 0 0 species 359303 885 1 Shewanella loihica no rank 196818 2346 6 0 0 1 Shewanella sp. W3-18-1 species 351745 337 0 376 2029986 species Shewanella sp. WE21 1 0 Shewanella sp. Pdp11 1 2059264 373 species species 363 60481 1 Shewanella sp. MR-7 0 495 94122 species Shewanella sp. ANA-3 1 0 402 60480 species Shewanella sp. MR-4 1 0 0 species 744 60217 1 Shewanella violacea 0 1 Shewanella psychrophila species 480 225848 0 species 192073 245 1 Shewanella denitrificans 0 Shewanella pealeana 1 399 70864 species 0 Shewanella piezotolerans 1 404011 497 species 0 1 Shewanella bicestrii species 444 2018305 4 Psychromonadaceae 7 family 1220 267894 1 0 1 0 3 Psychromonas genus 4 67572 1213 0 1 no rank 2614957 490 0 Psychromonas sp. CNPT3 1 314282 490 species 1 Psychromonas ingrahamii species 357794 719 0 1 0 3 Moritellaceae family 2 267891 456 genus 7 454 58050 2 Moritella 1 0 1 Moritella viscosa species 447 80854 0 0 1 Idiomarinaceae 6 1652 267893 7 family Idiomarina 5 135575 1645 23 genus 0 1 2 no rank 1082 2614829 0 0 Idiomarina sp. OT37-5b 1 2100422 564 species Idiomarina sp. X4 1 2055892 518 species 0 species 1096243 248 1 Idiomarina piscisalsi 0 0 1 Idiomarina loihiensis species 135577 292 30 Alteromonadaceae family 130 19800 72275 1 0 genus 1 89404 925 3 Glaciecola 1 0 1 377 2618684 no rank 0 0 1 Glaciecola sp. 4H-3-7+YE-5 species 377 983545 0 species 547 300231 1 Glaciecola nitratireducens 1 0 4 genus 533 1621534 2 Paraglaciecola 0 326544 529 species Paraglaciecola psychrophila 1 10 Marinobacter 115 genus 2742 11193 1 0 species 1874317 691 1 Marinobacter salinus 0 Marinobacter psychrophilus 1 330734 577 species 0 0 Marinobacter hydrocarbonoclasticus 1 2292 2743 species 0 Marinobacter adhaerens 1 1136 1033846 species Marinobacter similis 1 1420916 961 species 0 0 83889 3811 no rank 3 species 662 490759 1 Marinobacter sp. BSs20148 0 0 1 Marinobacter sp. CP1 species 1353 1671721 0 species 1796 1749259 1 Marinobacter sp. LQ44 1610 1420917 species Marinobacter salarius 1 0 2 Agarivorans 38 genus 578 261825 1 0 680279 540 species Agarivorans gilvus 1 0 0 1 Lacimicrobium 2 1489 1751872 genus 10 Lacimicrobium alkaliphilum 1 1526571 1479 species 0 genus 32 4952 226 10 Alteromonas 1 0 0 589873 345 species Alteromonas australica 1 species 28108 1015 1 Alteromonas macleodii 0 0 species 516 287094 1 Alteromonas addita 0 species 466 715451 1 Alteromonas naphthalenivorans 3 2614992 1145 no rank 0 0 Alteromonas sp. MB-3u-76 1 2058133 253 species Alteromonas sp. RW2A1 1 235 1917158 species 0 0 1 Alteromonas sp. Mac1 species 1777491 657 0 314275 918 species Alteromonas mediterranea 1 0 1 Alteromonas stellipolaris species 233316 515 1 0 25 Pseudoalteromonadaceae 58 family 267888 9460 1 0 24 Pseudoalteromonas genus 208 9402 53246 Pseudoalteromonas aliena 1 247523 440 species 0 0 species 694 43662 1 Pseudoalteromonas piscicida 314281 407 species Pseudoalteromonas tunicata 1 0 0 Pseudoalteromonas nigrifaciens 1 305 28109 species species 166935 234 1 Pseudoalteromonas translucida 0 species 620 298657 1 Pseudoalteromonas spongiae 0 358 43659 species Pseudoalteromonas tetraodonis 1 0 0 Pseudoalteromonas espejiana 1 28107 186 species 5 no rank 194690 2021 0 species 1720343 392 1 Pseudoalteromonas sp. 1_2015MBL_MicDiv 0 species 234831 300 1 Pseudoalteromonas sp. SM9913 0 species 1761891 454 1 Pseudoalteromonas sp. 13-15 0 Pseudoalteromonas sp. Bsw20308 1 283699 429 species 0 1514074 446 species Pseudoalteromonas sp. NC201 1 0 0 1 Pseudoalteromonas arctica species 232 394751 Pseudoalteromonas rubra 1 578 43658 species 0 species 267375 270 1 Pseudoalteromonas marina 0 0 403 161398 species Pseudoalteromonas phenolica 1 1 Pseudoalteromonas issachenkonii species 152297 337 0 species 43657 555 1 Pseudoalteromonas luteoviolacea 0 1348114 467 species Pseudoalteromonas piratica 1 0 185 176102 species Pseudoalteromonas agarivorans 1 0 1 Pseudoalteromonas atlantica species 288 673 0 species 228 229 1 Pseudoalteromonas haloplanktis 0 267889 2947 family 8 0 2 Thalassotalea 10 genus 469 1518149 1 0 0 1 Thalassotalea crassostreae species 1763536 459 32 genus 2478 28228 6 Colwellia 1 0 species 1967665 495 1 Colwellia beringensis 0 no rank 1408 196834 3 0 0 1 Colwellia sp. PAMC 20917 species 601 1816218 0 Colwellia sp. MT41 1 405 58049 species 1816219 402 species Colwellia sp. PAMC 21821 1 0 0 543 28229 species Colwellia psychrerythraea 1 0 1 135623 32042 22 order Vibrionales 43 1 0 family 332 32020 641 42 Vibrionaceae 1 genus 2042066 281 0 1755811 281 species Paraphotobacterium marinum 1 0 Photobacterium 4 657 2934 27 genus 0 1 0 species 1295392 1389 1 Photobacterium gaetbulicola 1 Photobacterium damselae species 38293 865 0 0 Photobacterium profundum 1 653 74109 species 1 0 genus 557 26175 662 30 Vibrio species 687 637 1 Vibrio gazogenes 0 190893 1101 species Vibrio coralliilyticus 1 0 52443 376 species Vibrio tapetis 1 0 0 Vibrio hyugaensis 1 341 1534743 species 0 1 species group 1891919 553 0 1 Vibrio tubiashii species 29498 553 0 species 676 1224 1 Vibrio fluvialis 10 717610 9718 species group 0 0 190895 430 species Vibrio rotiferianus 1 0 Vibrio parahaemolyticus 1 1468 670 species 0 Vibrio jasicida 1 766224 424 species 1 Vibrio alginolyticus species 663 2107 0 0 species 1353 691 1 Vibrio natriegens Vibrio owensii 1 734 696485 species 0 0 species 669 839 1 Vibrio harveyi 0 680 1068 species Vibrio campbellii 1 0 2 2315253 1295 species subgroup Vibrio antiquarius 1 449 150340 species 0 Vibrio diabolicus 1 50719 846 species 0 0 Vibrio tritonius 1 1435069 531 species 0 species 672 2587 1 Vibrio vulnificus 0 species 542 553239 1 Vibrio breoganii 611 45658 species Vibrio scophthalmi 1 0 0 742 28173 species Vibrio nigripulchritudo 1 0 1 Vibrio tasmaniensis species 212663 472 1 Vibrio anguillarum species 55601 936 0 no rank 1281 2614977 2 0 0 Vibrio sp. 2521-89 1 516 2014742 species 1116375 765 species Vibrio sp. EJY3 1 0 1 Vibrio mimicus species 674 1088 0 1 Vibrio cholerae species 1102 666 0 0 Vibrio qinghaiensis 1 625 2025808 species 0 1151 29494 species Vibrio furnissii 1 1 0 4 Aliivibrio genus 9 511678 1413 0 species 40269 354 1 Aliivibrio salmonicida 0 668 439 species Aliivibrio fischeri 1 species 80852 611 1 Aliivibrio wodanis 0 1 0 genus 12 885 246861 2 Grimontia 0 873 673 species Grimontia hollisae 1 0 1 Acidiferrobacterales 6 1692040 3226 order 44 5 Acidiferrobacteraceae 52 family 1692041 3182 1 0 20 genus 1893 1744881 2 Sulfuricaulis 1 0 0 species 1620215 1873 1 Sulfuricaulis limicola 1 0 genus 13 1692042 1237 2 Sulfurifustis 1 Sulfurifustis variabilis species 1224 1675686 0 4869 118884 no rank 13 0 genus 2 1524249 996 2 Pseudohongiella 1 0 0 Pseudohongiella spirulinae 1 1249552 994 species Candidatus Thioglobus 3 355 655184 1 genus 0 1 Candidatus Thioglobus singularis 1 188 1427364 species 0 166 1705394 species Candidatus Thioglobus autotrophicus 1 0 394 198346 clade 1 0 0 species 394 186490 1 Candidatus Baumannia cicadellinicola 0 3 565 32036 clade 1 Bathymodiolus septemdierum thioautotrophic gill symbiont species 185 113267 0 0 1 132 1541743 genus species 132 386487 1 Candidatus Ruthia magnifica 0 0 species 248 410330 1 Calyptogena okutanii thioautotrophic gill symbiont 0 1 Thiolapillus 2 1608298 1054 genus 8 0 1046 1076588 species Thiolapillus brandeum 1 genus 6 349742 1505 2 Sedimenticola 1 0 1 Sedimenticola thiotaurini species 1543721 1499 0 0 1 Methylococcales 12 135618 9024 order 35 0 1 403 8989 family 139 Methylococcaceae 11 1 0 5 Methylomonas genus 47 5440 416 0 no rank 2608980 1821 1 1727196 1821 species Methylomonas sp. DH-1 1 0 1 Methylomonas methanica species 421 1070 0 0 702114 1468 species Methylomonas koyamae 1 1538553 1034 species Methylomonas denitrificans 1 0 0 1 987 39773 genus 1 Methylomicrobium 2 1 Methylomicrobium alcaliphilum species 271065 986 0 Methylococcus 2 1598 413 32 genus 0 1 0 1566 414 species Methylococcus capsulatus 1 0 1 825 762296 genus 0 Methylovulum psychrotolerans 1 825 1704499 species 38312 135613 order 526 Chromatiales 52 0 1 661 1738654 7 family Woeseiaceae 3 0 1 Woeseia 2 654 1738655 4 genus 0 1 species 1548547 650 1 Woeseia oceani 0 18 Ectothiorhodospiraceae family 155 16436 72276 1 0 2 Ectothiorhodospira 21 genus 1051 2051 1 0 2030 2684909 no rank 1 0 Ectothiorhodospira sp. BSL-9 1 1442136 2030 species 0 1 0 3 genus 1765964 1376 2 Acidihalobacter 0 160660 1373 species Acidihalobacter prosperus 1 0 1 Spiribacter 3 1614 1335745 genus 69 0 Spiribacter salinus 1 500 1335746 species Spiribacter curvatus 1 1335757 1045 species 0 133193 2111 genus 33 Alkalilimnicola 2 0 1 0 Alkalilimnicola ehrlichii 1 2078 351052 species 106633 7538 genus 144 Thioalkalivibrio 6 0 1 0 1138 2621013 no rank 1 0 species 396595 1138 1 Thioalkalivibrio sp. K90mix 0 1 Thioalkalivibrio nitratireducens species 1003 186931 Thioalkalivibrio paradoxus 1 1089 108010 species 0 0 species 2657 1033854 1 Thioalkalivibrio sulfidiphilus species 106634 1507 1 Thioalkalivibrio versutus 0 1 genus 85108 1591 2 Halorhodospira 1 0 0 1 Halorhodospira halophila species 1590 1053 2 no rank 2027 451214 0 0 1 1273155 2027 genus 42 Thiohalobacter 2 Thiohalobacter thiocyanaticus 1 1985 585455 species 0 Granulosicoccaceae 3 1123 449719 1 family 0 1 0 1 Granulosicoccus 2 437504 1122 1 genus 0 437505 1121 species Granulosicoccus antarcticus 1 0 1 1765 255526 18 family Halothiobacillaceae 4 0 1 109262 1747 genus 53 Halothiobacillus 3 0 species 927 738 1 Halothiobacillus neapolitanus 0 no rank 956 2636392 1 0 1 Halothiobacillus sp. LS2 species 1860122 956 18 Chromatiaceae 159 family 14145 1046 1 0 2484 85072 4 genus Allochromatium 2 0 1 species 2480 1049 1 Allochromatium vinosum 0 Thioflavicoccus 2 156885 1349 genus 12 0 1 Thioflavicoccus mobilis 1 80679 1337 species 0 0 1 82569 1423 no rank 0 species 1978339 1423 1 Chromatiaceae bacterium 2141T.STBD.0c.01a 3304 53392 genus 18 Thiodictyon 2 0 1 species 1166950 3286 1 Candidatus Thiodictyon syntrophicum 0 genus 2 1980513 212 2 Candidatus Nitrosoglobus 1 0 1630141 210 species Candidatus Nitrosoglobus terrae 1 0 24 genus 13724 1695 2 Thiocystis 1 0 0 73141 1671 species Thiocystis violascens 1 Nitrosococcus 4 1194 1227 5 genus 0 1 species 473531 499 1 Nitrosococcus watsonii 0 0 133539 363 species Nitrosococcus halophilus 1 0 Nitrosococcus oceani 1 327 1229 species 2 Marichromatium 69 genus 85076 2325 1 0 Marichromatium purpuratum 1 37487 2256 species 0 0 1 1676141 1629 7 family Wenzhouxiangellaceae 3 Wenzhouxiangella 2 1622 1676142 genus 7 0 1 1579979 1615 species Wenzhouxiangella marina 1 0 5630 118969 3 order Legionellales 18 0 1 14 Legionellaceae 7 family 444 4935 1 0 1 genus 465 331 0 1 Tatlockia micdadei species 451 331 0 25 genus 445 4597 12 Legionella 1 0 0 1 Legionella oakridgensis species 29423 295 Legionella hackeliae 1 328 449 species 0 2005262 139 species Legionella endosymbiont of Polyplax serrata 1 0 96230 249 species Legionella fallonii 1 0 1 Legionella lansingensis species 45067 202 0 species 361 66969 1 Legionella waltersii 0 species 28087 281 1 Legionella sainthelensi 0 species 317 450 1 Legionella longbeachae 0 0 452 360 species Legionella spiritensis 1 0 Legionella clemsonensis 1 1867846 504 species 0 species 446 1536 1 Legionella pneumophila 0 118968 692 family 3 2 776 558 genus 0 1 96 2676648 no rank 0 species 96 325775 1 Coxiella endosymbiont of Amblyomma americanum 0 1 Coxiella burnetii species 462 777 0 1 no rank 134 134284 0 species 1592897 134 1 Coxiella-like endosymbiont 0 order 23 9861 72273 32 Thiotrichales 1 0 0 1 34064 5884 family 10 Francisellaceae 14 0 1 298 1869285 genus Allofrancisella guangzhouensis 1 298 594679 species 0 12 Francisella 34 genus 5576 262 1 0 0 2610885 607 no rank 2 0 475375 256 species Francisella sp. MA067296 1 0 species 1547445 351 1 Francisella sp. FSC1006 1 Francisella sp. CA97-1460 species 1542390 362 0 0 28110 1126 species Francisella philomiragia 1 0 573570 311 species Francisella sp. TX077310 1 Francisella halioticida 1 319 549298 species 0 0 Francisella hispaniensis 1 301 622488 species 0 1 Francisella sp. TX077308 species 313 573569 0 1 Francisella tularensis species 1241 263 0 1 Francisella persica species 286 954 Francisella noatunensis 1 676 657445 species 0 Piscirickettsiaceae 13 135616 3306 family 21 0 1 genus 1237 700 1 0 0 Piscirickettsia salmonis 1 1238 700 species 2 genus 941 40222 3 Methylophaga 1 0 species 529 754476 1 Methylophaga nitratireducenticrescens 0 Methylophaga frappieri 1 410 754477 species 0 2 460 933 genus 0 Thiomicrospira cyclica 1 161 147268 species 0 0 92245 299 species Thiomicrospira aerophila 1 4 Cycloclasticus 3 genus 34067 854 1 0 0 species 1329899 284 1 Cycloclasticus zancles 0 567 2621467 no rank 2 0 1 Cycloclasticus sp. P1 species 241 385025 0 326 728003 species Cycloclasticus sp. PY97N 1 0 1 Hydrogenovibrio 2 28884 330 3 genus species 39765 327 1 Hydrogenovibrio crunogenus 0 0 family 648 135617 4 1 0 1 genus 303 1021 2 Beggiatoa 0 302 288004 species Beggiatoa leptomitoformis 1 1 0 4 genus 40751 345 2 Thioploca 0 Thioploca ingrica 1 341 40754 species Pseudomonadales 128 236449 72274 order 1067 0 1 Moraxellaceae 42 468 20067 77 family 0 1 Moraxella 5 475 2611 64 genus 0 1 Moraxella osloensis 1 799 34062 species 0 1 Moraxella catarrhalis species 440 480 0 0 Moraxella ovis 1 29433 506 species 0 386891 802 species Moraxella bovoculi 1 0 1 Acinetobacter 25 469 13494 genus 139 Acinetobacter schindleri 1 108981 545 species 0 0 species 29430 409 1 Acinetobacter haemolyticus Acinetobacter radioresistens 1 40216 463 species 0 Acinetobacter bereziniae 1 106648 450 species 0 557 1148157 species Acinetobacter oleivorans 1 0 species 756892 669 1 Acinetobacter indicus 0 1 Acinetobacter larvae species 1789224 335 0 0 Acinetobacter johnsonii 1 392 40214 species 5 4537 909768 species group 0 Acinetobacter calcoaceticus 1 774 471 species 0 species 1785128 389 1 Acinetobacter lactucae 0 0 Acinetobacter nosocomialis 1 471 106654 species 0 Acinetobacter baumannii 1 1638 470 species 0 1265 48296 species Acinetobacter pittii 1 0 1 202950 573 species 573 62977 strain Acinetobacter sp. ADP1 1 0 Acinetobacter equi 1 1324350 442 species 0 0 7 no rank 196816 2805 263 1646498 species Acinetobacter sp. TTH0-4 1 0 494 1808001 species Acinetobacter sp. LoGeW2-3 1 0 species 281 1758189 1 Acinetobacter sp. ACNIH2 0 species 509 1636603 1 Acinetobacter sp. ACNIH1 0 2079596 344 species Acinetobacter sp. SWBY1 1 0 1 Acinetobacter sp. NCu2D-2 species 513 1608473 0 0 species 401 1407071 1 Acinetobacter sp. TGL-Y2 1 Acinetobacter soli species 521 487316 0 0 1 Acinetobacter junii species 40215 657 1 0 35 genus 3885 497 11 Psychrobacter 0 Psychrobacter cryohalolentis 1 345 330922 species 0 334543 612 species Psychrobacter arcticus 1 1 Psychrobacter urativorans species 45610 324 0 no rank 2022 196806 6 0 420 1028416 species Psychrobacter sp. DAB_AL43B 1 0 0 388 1720344 species Psychrobacter sp. AntiMn-1 1 Psychrobacter sp. P11G5 1 1699624 316 species 0 571800 224 species Psychrobacter sp. G 1 0 Psychrobacter sp. PRwf-1 1 349106 371 species 0 0 Psychrobacter sp. P2G3 1 1699622 303 species 0 species 547 261164 1 Psychrobacter alimentarius 1 0 1293 family 135621 215315 85 Pseudomonadaceae 0 3 subfamily 5337 351 3 Azotobacter genus 30 5337 352 1 0 0 Azotobacter chroococcum 1 353 3116 species 0 354 2191 species Azotobacter vinelandii 1 1 0 genus 8040 208114 286 80 Pseudomonas species 1188 312306 1 Pseudomonas entomophila 0 0 Pseudomonas versuta 1 837 1788301 species 0 species 1853130 1329 1 Pseudomonas silesiensis Pseudomonas psychrotolerans 1 1905 237610 species 0 0 216142 1326 species Pseudomonas rhizosphaerae 1 0 6 136845 31875 species group 0 1 Pseudomonas mosselii species 3488 78327 species 1628 47885 1 Pseudomonas oryzihabitans 0 0 Pseudomonas putida 1 18245 303 species 0 species 1173 70775 1 Pseudomonas plecoglossicida 0 1 Pseudomonas fulva species 47880 2787 4554 76759 species Pseudomonas monteilii 1 0 0 Pseudomonas alkylphenolica 1 237609 1227 species species 157782 2106 1 Pseudomonas parafulva 0 9 species group 28084 136843 0 0 species 76758 1160 1 Pseudomonas orientalis 1864 200450 species Pseudomonas trivialis 1 0 0 1384 47879 species Pseudomonas corrugata 1 0 2396 47878 species Pseudomonas azotoformans 1 0 Pseudomonas protegens 1 1928 380021 species 1139 76761 species Pseudomonas veronii 1 0 0 1 Pseudomonas fluorescens species 15379 294 Pseudomonas mandelii 1 75612 1419 species 0 0 species 1415 200451 1 Pseudomonas poae 0 1 Pseudomonas brassicacearum species 930166 3038 0 1 Pseudomonas knackmussii species 1997 65741 0 Pseudomonas alcaliphila 1 1715 101564 species Pseudomonas lurida 1 1159 244566 species 0 0 Pseudomonas cremoricolorata 1 157783 1340 species species 1156 1583341 1 Pseudomonas cerasi 0 2 species group 136842 9926 0 0 7641 587753 species Pseudomonas chlororaphis 1 0 Pseudomonas fragi 1 296 2285 species 8 136849 20124 species group 0 0 species 36746 1299 1 Pseudomonas cichorii 1 no rank 2775504 1039 0 0 1 Pseudomonas sp. Lz4W species 1039 1206777 0 species subgroup 251695 8027 1 0 species 317 8027 1 Pseudomonas syringae 0 2 species subgroup 251698 4648 species 47877 2462 1 Pseudomonas amygdali 0 0 species 29438 2186 1 Pseudomonas savastanoi 0 species 1626 33069 1 Pseudomonas viridiflava 0 1165 46257 species Pseudomonas avellanae 1 1 Pseudomonas syringae group genomosp. 3 species 2320 251701 0 0 136846 12038 species group 2 1379 74829 species Pseudomonas balearica 1 0 0 1 578833 10659 species subgroup 1 Pseudomonas stutzeri species 10659 316 0 0 Pseudomonas frederiksbergensis 1 104087 2889 species 1 Pseudomonas antarctica species 219572 1137 0 0 1 Pseudomonas koreensis species 198620 2381 0 6 136841 27479 species group species 8304 287 1 Pseudomonas aeruginosa 0 0 2108 53412 species Pseudomonas resinovorans 1 1232139 2558 species subgroup 1 0 0 2558 1149133 species Pseudomonas furukawaii 1 species 6573 300 1 Pseudomonas mendocina 0 0 species 53408 5742 1 Pseudomonas citronellolis 0 species 2194 43263 1 Pseudomonas alcaligenes 30 43818 196821 no rank 0 Pseudomonas sp. HLS-6 1 933 2049589 species 0 Pseudomonas sp. M30-35 1 874 1981174 species 0 0 species 1409 1534110 1 Pseudomonas sp. DR 5-09 0 Pseudomonas sp. MRSN12121 1 1611770 1873 species 1649877 1680 species Pseudomonas sp. CCOS 191 1 0 0 species 1315 1415630 1 Pseudomonas sp. TKP Pseudomonas sp. SWI6 1 2083051 1114 species 0 0 Pseudomonas sp. SWI36 1 2083052 1423 species species 940 1827300 1 Pseudomonas sp. MYb193 0 0 species 1930532 1312 1 Pseudomonas sp. CC6-YY-74 0 1 Pseudomonas sp. PONIH3 species 1643 1636610 0 1837 1283291 species Pseudomonas sp. URMO17WK12:I11 1 0 1302 2083055 species Pseudomonas sp. LH1G9 1 1 Pseudomonas sp. LG1D9 species 1025 2083054 0 0 1 Pseudomonas sp. TCU-HL1 species 1856685 2034 0 2018067 982 species Pseudomonas sp. FDAARGOS_380 1 0 species 1500687 1971 1 Pseudomonas sp. St29 1 Pseudomonas sp. XWY-1 species 2069256 1567 0 0 1 Pseudomonas sp. UW4 species 1287 1207075 0 species 1194 2083053 1 Pseudomonas sp. SWI44 0 Pseudomonas sp. ATCC 13867 1 2347 1294143 species 0 Pseudomonas sp. GR 6-02 1 1659194 969 species 2067572 1470 species Pseudomonas sp. NC02 1 0 1378 1338689 species Pseudomonas sp. JY-Q 1 0 species 2138 1500686 1 Pseudomonas sp. Os17 0 0 Pseudomonas sp. StFLB209 1 1028989 1956 species 0 1898684 1494 species Pseudomonas sp. LPH1 1 Pseudomonas sp. S-6-2 1 1081 1931241 species 0 0 1 Pseudomonas sp. FGI182 species 2132 1259844 1138 69328 species Pseudomonas sp. VLB120 1 0 0 genus 1849530 571 1 571 1697053 species Oblitimonas alkaliphila 1 0 200938 2561 phylum 5 0 1 0 5 Chrysiogenetes 3 class 2561 118001 0 1 Chrysiogenales 4 189769 2558 order 25 0 1 189770 2533 23 family Chrysiogenaceae 3 1 0 2 Desulfurispirillum 10 genus 393029 2510 2500 936456 species Desulfurispirillum indicum 1 0 0 1783257 67342 clade 93 1 0 phylum 24 74201 16991 25 Verrucomicrobia 0 1 5063 203494 class 11 Verrucomicrobiae 6 0 1 Verrucomicrobiales 5 5052 48461 34 order 1 0 4 Akkermansiaceae family 67 1647988 5018 0 1 4951 239934 12 genus Akkermansia 3 0 1 Akkermansia muciniphila species 239935 2670 0 species 2269 1679444 1 Akkermansia glycaniphila 0 2 class 138 134549 Candidatus Xiphinematobacter 2 138 134550 1 genus 0 1 1 no rank 137 2648876 0 species 137 1704307 1 Candidatus Xiphinematobacter sp. Idaho Grape 0 417295 3331 no rank 2 0 species 1867 2026799 1 Verrucomicrobia bacterium 0 species 1637999 1464 1 Verrucomicrobia bacterium IMCC26134 0 8001 414999 54 class Opitutae 11 0 1 1 0 7 Opitutales order 175 7062 415000 1 0 6 Opitutaceae 65 family 6887 134623 1775 178440 genus 37 Opitutus 2 0 1 Opitutus terrae 1 107709 1738 species 0 0 1 1778 1961799 49 genus Lacunisphaera 2 0 species 1729 1838286 1 Lacunisphaera limnophila 1 no rank 3269 278955 0 Opitutaceae bacterium TAV5 1 794903 3269 species 0 1 0 18 order 415001 885 3 Puniceicoccales 2 family 867 415002 0 10 genus 867 442430 2 Coraliomargarita 1 0 0 species 857 395922 1 Coraliomargarita akajimensis 1 class 1955630 434 3 Methylacidiphilae 1 0 0 433 717963 order 2 717964 433 family 2 0 0 genus 511745 433 2 0 Methylacidiphilum fumariolicum 1 591154 174 species 0 259 511746 species Methylacidiphilum infernorum 1 phylum 8 19475 203682 39 Planctomycetes 1 0 1 0 28 Planctomycetia class 88 15317 203683 1 0 11 Planctomycetales 314 order 7043 112 0 1 6729 126 family 42 Planctomycetaceae 10 0 1 Rubinisphaera 2 1029 1649490 5 genus Rubinisphaera brasiliensis 1 119 1024 species 0 118 3514 genus 20 Planctomyces 3 0 1 0 no rank 2648843 3494 2 Planctomyces sp. SH-PL62 1 1848 1636152 species 0 0 species 1632864 1646 1 Planctomyces sp. SH-PL14 1936111 1174 genus 3 Fuerstia 2 0 1 1171 1891926 species Fuerstia marisgermanicae 1 0 2 Planctopirus genus 1 1649480 970 1 0 0 1 Planctopirus limnophila species 969 120 7 4435 2691356 order 0 Isosphaeraceae 7 1763524 4435 family 78 0 1 2 Singulisphaera 1 genus 1144 466152 1 0 0 466153 1143 species Singulisphaera acidiphila 1 genus 3 1157 127 2 Isosphaera 1 0 1 Isosphaera pallida species 128 1154 0 Paludisphaera 2 1763521 2056 genus 21 0 1 0 species 2035 1387353 1 Paludisphaera borealis 6 order 2397 2691354 0 0 2 family 2691358 916 0 1 1676125 916 genus 1 Thermogutta 2 0 1 Thermogutta terrifontis species 1331910 915 family 1481 2691357 4 0 genus 1 265488 716 2 Rhodopirellula 1 0 0 Rhodopirellula baltica 1 715 265606 species 1 0 genus 1 765 123 2 Pirellula 1 Pirellula staleyi species 125 764 0 0 3 1354 2691355 order Gemmataceae 3 1354 1914233 family 3 0 1 1 0 2 Gemmata 7 genus 113 1351 no rank 1344 2622970 1 0 0 1 Gemmata sp. SH-PL17 species 1630693 1344 0 3 767 2517206 class Candidatus Brocadiales 3 1127829 767 order 38 0 1 2 Candidatus Brocadiaceae family 1 1127830 729 1 0 1 genus 728 380738 0 0 Candidatus Kuenenia stuttgartiensis 1 174633 728 species 0 1 Phycisphaerae 7 666505 3383 20 class 0 2483366 1640 order 2 2 family 1640 2483367 0 2 2483368 1640 genus 0 0 1 Phycisphaerae bacterium ST-PulAB-D4 species 1941349 851 species 1940790 789 1 Phycisphaerae bacterium L21-RPul-D3 0 666506 1723 order 39 Phycisphaerales 4 0 1 1 0 14 family 1684 666507 3 Phycisphaeraceae 0 1 Phycisphaera 2 666508 1670 genus 2 0 1668 547188 species Phycisphaera mikurensis 1 1467 134625 phylum 4 0 4 class 1467 1921781 4 Kiritimatiellae 1 0 1 0 3 Kiritimatiellales order 5 1463 1921782 0 2 1458 1921783 family 0 1 Kiritimatiella 2 1458 1921784 genus 24 0 Kiritimatiella glycovorans 1 1307763 1434 species 0 26611 256845 phylum 3 0 1 26611 1313211 class 30 Lentisphaeria 3 0 1 Victivallales 2 278082 26581 3478 order no rank 23103 1674876 1 0 species 2094242 23103 1 Victivallales bacterium CCUG 44730 0 0 22 2798 204428 phylum 0 1 Chlamydiia 22 204429 2798 class 3 14 Chlamydiales 2 order 1713 51291 1 0 13 Chlamydiaceae family 3 1711 809 1 0 0 1113537 1708 no rank 12 12 Chlamydia 85 genus 810 1708 1 0 1 Chlamydia gallinacea species 153 1457153 0 0 Chlamydia pecorum 1 187 85991 species 0 species 88 83559 1 Chlamydia suis 0 1 Chlamydia felis species 83556 160 Chlamydia abortus 1 107 83555 species 0 1 Chlamydia trachomatis species 217 813 0 1 Chlamydia pneumoniae species 83558 107 0 83554 206 species Chlamydia psittaci 1 0 0 1 Chlamydia caviae species 109 83557 0 Chlamydia avium 1 162 1457141 species 0 1 Chlamydia muridarum species 83560 127 1963360 1082 2 order Parachlamydiales 7 0 1 2 92713 475 family 0 0 1 245 282132 genus 1 Candidatus Protochlamydia naegleriophila species 245 389348 0 1 230 83551 genus 0 0 230 83552 species Parachlamydia acanthamoebae 1 Waddliaceae 2 92714 363 1 family 0 1 0 71666 362 genus 1 0 Waddlia chondrophila 1 362 71667 species 2 Simkaniaceae 1 family 242 92712 1 0 0 1 genus 34093 241 1 Simkania negevensis species 241 83561 0 0 superkingdom 63436 2157 271 0 1 1783276 40 clade 0 phylum 40 1801631 1 0 1 2490204 40 genus 0 1 Candidatus Micrarchaeota archaeon Mia14 species 1920749 40 7 phylum 28890 57996 219 Euryarchaeota 1 0 39 9598 2283794 clade 0 24 Methanobacteria class 2 183925 5692 1 0 23 Methanobacteriales order 2 2158 5690 1 0 0 family 142 2178 1 0 genus 142 2179 1 0 1 Methanothermus fervidus species 142 2180 family 5546 2159 21 0 0 1 genus 2316 399 0 2317 399 species Methanosphaera stadtmanae 1 1586 2160 6 genus Methanobacterium 8 0 1 0 species 118062 192 1 Methanobacterium congolense 868131 243 species Methanobacterium paludis 1 0 1 Methanobacterium lacus species 877455 275 0 0 2162 219 species Methanobacterium formicicum 1 0 species 191 59277 1 Methanobacterium subterraneum no rank 2627676 460 2 0 0 Methanobacterium sp. MB1 1 1379702 295 species 1 Methanobacterium sp. MZ-A1 species 165 1911685 0 0 1 Methanobrevibacter 7 2172 3238 1 genus species 576 230361 1 Methanobrevibacter millerae 0 no rank 710 2638681 2 0 1609968 352 species Methanobrevibacter sp. YE315 1 0 1 Methanobrevibacter sp. AbM4 species 224719 358 0 0 species 2173 621 1 Methanobrevibacter smithii 0 species 853 83816 1 Methanobrevibacter ruminantium 477 294671 species Methanobrevibacter olleyae 1 0 5 Methanothermobacter genus 1 145260 323 1 0 1 no rank 88 2631116 0 0 species 88 866790 1 Methanothermobacter sp. CaT2 species 96 145263 1 Methanothermobacter marburgensis 0 0 1 Methanothermobacter wolfeii species 145261 56 0 species 145262 82 1 Methanothermobacter thermautotrophicus 0 183939 3906 class 15 0 1 2182 3906 order 1 Methanococcales 15 1 0 6 Methanococcaceae family 2 2329 2183 0 genus 2026 2184 4 0 2187 163 species Methanococcus vannielii 1 0 species 42879 156 1 Methanococcus aeolicus 39152 1427 species Methanococcus maripaludis 1 0 0 Methanococcus voltae 1 2188 280 species 0 genus 155862 301 1 Methanothermococcus okinawensis 1 301 155863 species 0 196117 1576 family 8 0 0 genus 196118 1225 6 species 83171 231 1 Methanocaldococcus fervens 0 0 1 Methanocaldococcus bathoardescens species 1301915 309 0 Methanocaldococcus jannaschii 1 2190 175 species 0 no rank 2641196 229 1 species 644281 229 1 Methanocaldococcus sp. FS406-22 0 67760 73 species Methanocaldococcus infernus 1 0 0 Methanocaldococcus vulcanius 1 73913 208 species 1 0 2 Methanotorris 1 genus 196119 351 2189 350 species Methanotorris igneus 1 0 9 Archaeoglobi class 3 1045 183980 1 0 8 order 2231 1042 0 8 2232 1042 family 0 0 1 90 54260 6 genus Ferroglobus 2 0 1 Ferroglobus placidus species 54261 84 2 genus 433 190818 0 267 565033 species Geoglobus acetivorans 1 0 0 113653 166 species Geoglobus ahangari 1 0 519 2233 genus 4 0 1 Archaeoglobus profundus species 67 84156 1 Archaeoglobus sulfaticallidus species 1316941 145 0 Archaeoglobus fulgidus 1 2234 140 species 0 Archaeoglobus veneficus 1 58290 167 species 0 0 113 2290931 35896 clade 0 1 Halobacteria 64 183963 19223 148 class 2235 7622 order 162 Halobacteriales 28 0 1 2236 2540 family 20 Halobacteriaceae 11 0 1 Halanaeroarchaeum 2 1656823 170 genus 21 0 1 Halanaeroarchaeum sulfurireducens 1 149 1604004 species 0 342 1980514 5 genus Halodesulfurarchaeum 2 0 1 1 Halodesulfurarchaeum formicicum species 337 1873524 0 1 0 2 Halalkalicoccus genus 36 429 332246 0 Halalkalicoccus jeotgali 1 393 413810 species Halobacterium 4 1579 2239 67 genus 0 1 1 2668073 550 no rank 0 0 species 751944 550 1 Halobacterium sp. DL1 0 species 522 1407499 1 Halobacterium hubeiense 2242 440 species Halobacterium salinarum 1 0 1963268 4920 55 family Haloarculaceae 16 0 1 21 genus 1073987 674 2 Halorientalis 1 0 no rank 2648975 653 1 0 0 Halorientalis sp. IM1011 1 1932360 653 species 1 0 5 Haloarcula 58 genus 2237 1791 444 2624677 no rank 1 0 1592728 444 species Haloarcula sp. CBA1115 1 0 species 411 1932004 1 Haloarcula taiwanensis 0 0 1 Haloarcula hispanica species 51589 471 0 species 2238 407 1 Haloarcula marismortui 63743 697 genus 11 Natronomonas 3 0 1 0 2257 335 species Natronomonas pharaonis 1 0 Natronomonas moolapensis 1 351 416273 species Halorhabdus 3 953 146825 1 genus 0 1 0 146826 665 species Halorhabdus utahensis 1 0 1 Halorhabdus tiamatea species 430914 287 12 genus 750 203135 2 Halomicrobium 1 0 Halomicrobium mukohataei 1 57705 738 species 0 1 0 order 60 1644060 6426 17 Natrialbales 16 Natrialbaceae 97 family 6366 1644061 1 0 3 Haloterrigena genus 11 121871 1039 1 0 0 1 Haloterrigena daqingensis species 588898 333 0 695 62320 species Haloterrigena turkmenica 1 0 genus 551 1269201 1 0 no rank 2621923 551 1 1 Salinarchaeum sp. Harcht-Bsk1 species 551 1333523 0 1 0 2 Halopiger genus 2 648 387342 0 646 387343 species Halopiger xanaduensis 1 0 1 530 63742 genus 0 1 Natrialba magadii species 13769 530 1 203193 1142 genus 0 0 1 Halobiforma lacisalsi species 1142 229731 Natrinema 3 88723 1086 2 genus 0 1 0 1 622 2622230 no rank 406552 622 species Natrinema sp. J7-2 1 0 0 species 69525 462 1 Natrinema pellirubrum genus 2256 326 1 0 0 species 44930 326 1 Natronobacterium gregoryi 0 1 353799 353 genus 3 Halostagnicola 2 350 353800 species Halostagnicola larsenii 1 0 genus 29287 594 1 0 0 1 Natronococcus occultus species 29288 594 order 29 5027 1644055 18 Haloferacales 1 0 0 1 Haloferacaceae 8 2515 1644056 family 3 53 genus 2251 1912 4 Haloferax 1 0 Haloferax mediterranei 1 393 2252 species 0 1 Haloferax volcanii species 763 2246 0 species 35746 703 1 Haloferax gibbonsii 0 0 1 243 293431 genus 243 293091 species Haloquadratum walsbyi 1 0 0 1 60846 357 genus 1 Halogeometricum 2 Halogeometricum borinquense 1 60847 356 species 0 0 1 2111 1963271 family 25 Halorubraceae 8 1 0 43 genus 1209988 536 2 Halopenitus 0 1048396 493 species Halopenitus persicus 1 1 0 genus 47 56688 864 3 Halorubrum 0 1 Halorubrum trapanicum species 29284 530 0 Halorubrum lacusprofundi 1 287 2247 species 0 1 686 1644057 genus 1 Salinigranum 2 685 755307 species Salinigranum rubrum 1 0 0 1 no rank 372 2678336 1 halophilic archaeon DL31 species 756883 372 0 0 1 16673 224756 78 class Methanomicrobia 49 28 Methanosarcinales 7 order 94695 11074 1 0 1 0 5 family 2206 10214 23 Methanosarcinaceae 0 2 2175 536 genus 250 2177 species Methanohalophilus halophilus 1 0 0 species 286 2176 1 Methanohalophilus mahii 1 genus 101191 579 0 0 Methanomethylovorans hollandica 1 101192 579 species 1 genus 2220 396 0 species 396 420950 1 Methanolobus psychrophilus 0 383 196136 genus 1 0 0 383 39669 species Methanosalsum zhilinae 1 0 1 Methanosarcina 13 2207 7379 genus 23 0 38027 669 species Methanosarcina siciliae 1 0 species 308 2210 1 Methanosarcina thermophila 689 418008 species Methanosarcina horonobensis 1 0 0 393 170861 species Methanosarcina lacustris 1 0 species 570 2215 1 Methanosarcina vacuolata 2208 1284 species Methanosarcina barkeri 1 0 0 2214 594 species Methanosarcina acetivorans 1 no rank 2644672 2277 4 0 species 617 1434099 1 Methanosarcina sp. Kolksee 0 0 1434103 446 species Methanosarcina sp. WWM596 1 0 494 1434102 species Methanosarcina sp. WH1 1 species 720 1434100 1 Methanosarcina sp. MTP4 0 Methanosarcina mazei 1 572 2209 species 0 0 1 2321 303 genus 0 species 303 2322 1 Methanohalobium evestigatum 0 1 2225 633 genus 1 Methanococcoides 3 0 species 29291 332 1 Methanococcoides burtonii Methanococcoides methylutens 1 2226 300 species 0 4 Methanosaetaceae 3 family 143067 853 1 0 1 0 3 Methanothrix 8 genus 850 2222 333 301375 species Methanosaeta harundinacea 1 0 1 Methanothrix soehngenii species 2223 509 0 0 1 Methanomicrobiales 17 4663 2191 order 14 1 0 family 1 1985 2194 7 Methanomicrobiaceae 4 Methanoculleus genus 6 45989 1562 1 0 2619537 519 no rank 1 0 519 86622 species Methanoculleus sp. MAB1 1 0 species 83986 616 1 Methanoculleus bourgensis 0 Methanoculleus marisnigri 1 421 2198 species 0 1 0 2 Methanolacinia 2 genus 230355 422 Methanolacinia petrolearia 1 54120 420 species 0 0 family 196137 372 1 0 genus 2202 372 1 0 Methanospirillum hungatei 1 2203 372 species 2 family 965 88404 0 0 1 2192 965 genus 5 Methanocorpusculum 2 0 species 83984 960 1 Methanocorpusculum labreanum 1 0 6 Methanoregulaceae 1 family 1327 1198451 1 0 42 genus 475087 436 2 Methanosphaerula 1 Methanosphaerula palustris species 475088 394 0 0 1 395331 890 genus 2 Methanoregula 3 Methanoregula formicica 1 882104 570 species 0 0 Methanoregula boonei 1 318 358766 species 3 Methanocellales order 6 858 570264 1 0 family 852 570265 2 0 0 852 570266 genus 2 279 1175444 species Methanocella conradii 1 0 0 1 Methanocella arvoryzae species 1175445 573 7232 183968 12 class Thermococci 41 0 1 Thermococcales 40 2258 7220 13 order 0 1 Thermococcaceae 39 7207 2259 23 family 0 1 1 157 83867 genus 0 0 species 971279 157 1 Palaeococcus pacificus Pyrococcus 8 2260 1094 2 genus 0 1 1 Pyrococcus kukulkanii species 66 1609559 0 0 1 Pyrococcus abyssi species 158 29292 no rank 2629106 256 2 0 species 194 1183377 1 Pyrococcus sp. ST04 0 1 Pyrococcus sp. NA2 species 342949 62 0 0 Pyrococcus furiosus 1 276 2261 species 0 Pyrococcus horikoshii 1 104 53953 species 0 1 Pyrococcus yayanosii species 232 1008460 Thermococcus 29 2263 5933 genus 52 0 1 0 species 71997 189 1 Thermococcus gorgonarius 0 species 94 54262 1 Thermococcus chitonophagus 0 species 181 1505907 1 Thermococcus eurythermalis 0 1 Thermococcus profundus species 177 49899 6 1367 2627626 no rank 0 0 379 2016361 species Thermococcus sp. EXT12c 1 246969 248 species Thermococcus sp. AM4 1 0 0 122420 97 species Thermococcus sp. P6 1 species 127 1674923 1 Thermococcus sp. 2319x1 0 1 Thermococcus sp. 4557 species 356 1042877 0 species 2008440 160 1 Thermococcus sp. 5-4 0 0 1 Thermococcus cleftensis species 163003 243 0 1 Thermococcus nautili species 316 195522 Thermococcus barossii 1 54077 279 species 0 species 186 72803 1 Thermococcus siculi 0 0 species 239 2264 1 Thermococcus celer 1 Thermococcus thioreducens species 277988 149 0 0 1 Thermococcus barophilus species 276 55802 0 1 Thermococcus litoralis species 2265 160 301 187880 species Thermococcus radiotolerans 1 0 0 species 239 187878 1 Thermococcus gammatolerans Thermococcus sibiricus 1 236 172049 species 0 0 1 Thermococcus piezophilus species 208 1712654 species 71998 208 1 Thermococcus pacificus 0 species 342948 137 1 Thermococcus onnurineus 0 214 110164 species Thermococcus guaymasensis 1 0 1 Thermococcus kodakarensis species 76 311400 0 0 212 53952 species Thermococcus peptonophilus 1 0 194 582419 species Thermococcus paralvinellae 1 16 clade 2283796 4218 0 0 1 Thermoplasmata 14 183967 3956 class 19 1 533 1234666 no rank 0 1495144 533 species methanogenic archaeon ISO4-H5 1 0 1183 1235850 order 5 0 3 Methanomassiliicoccaceae 7 family 1577788 523 1 0 1 293 1080709 genus 0 0 1406512 293 species Candidatus Methanomassiliicoccus intestinalis 1 0 1 1607807 223 genus Candidatus Methanoplasma termitum 1 1577791 223 species 0 family 660 2517203 2 0 Candidatus Methanomethylophilus 2 1291539 660 genus 111 0 1 1 Candidatus Methanomethylophilus alvus species 1291540 549 0 0 2221 2301 order 7 1 no rank 1021 1919231 0 0 1 Thermoplasmatales archaeon BRNA1 species 1021 1054217 0 1 family 257 46630 1 genus 257 46631 0 0 Picrophilus torridus 1 257 82076 species 0 2 293 46659 family 0 genus 293 2302 2 species 105 2303 1 Thermoplasma acidophilum 0 0 Thermoplasma volcanium 1 188 50339 species 523 90142 family 2 0 74968 523 genus 2 0 Ferroplasma acidarmanus 1 97393 284 species 0 0 74969 239 species Ferroplasma acidiphilum 1 1747776 127 family 1 0 1 1747777 127 genus 0 species 1673428 127 1 Cuniculiplasma divulgatum 0 0 2 1803510 262 clade 0 genus 379546 262 2 1 no rank 115 2633939 0 species 115 673860 1 Aciduliprofundum sp. MAR08-339 0 Aciduliprofundum boonei 1 379547 147 species 0 0 51 5400 1783275 clade 10 phylum 1697 651137 0 3 1643678 677 class 0 0 1 order 608 1033996 1 608 1033997 family 0 0 genus 497726 608 1 Nitrososphaera viennensis 1 1034015 608 species 0 2 Candidatus Nitrosocaldales 1 order 69 1968909 1 0 0 1968910 68 family 1 0 498374 68 genus 1 2045011 68 species Candidatus Nitrosocaldus islandicus 1 0 538 651142 no rank 3 0 genus 1593364 246 1 0 species 246 1410606 1 Candidatus Nitrosopelagicus brevis 0 292 1825023 genus 2 0 species 161 1603555 1 Candidatus Nitrosotenuis cloacae 0 0 Candidatus Nitrosotenuis sp. AQ6f 1 1846278 131 species order 482 31932 4 0 1 family 338190 482 4 Nitrosopumilaceae 1 0 0 genus 338191 304 2 0 species 150 1580092 1 Candidatus Nitrosopumilus adriaticus 0 1 Candidatus Nitrosopumilus sediminis species 1229909 154 0 genus 1993653 177 1 1 Candidatus Nitrosomarinus catalina species 1898749 177 0 51967 55 phylum 1 0 1 498845 55 genus 0 0 498846 55 species Candidatus Korarchaeum cryptofilum 1 0 28889 3648 phylum 40 183924 3648 3 class Thermoprotei 40 0 1 1 0 order 1 114380 713 13 Desulfurococcales family 536 2272 9 0 2 71 54258 genus 0 species 160233 52 1 Ignicoccus hospitalis 0 19 54259 species Ignicoccus islandicus 1 0 0 1 477695 38 genus 0 Thermogladius calderae 1 1200300 38 species 0 2 genus 113 2273 species 27 94694 1 Desulfurococcus amylolyticus 0 species 86 2275 1 Desulfurococcus mucosus 0 Staphylothermus 3 271 2279 2 genus 0 1 0 species 128 84599 1 Staphylothermus hellenicus 141 2280 species Staphylothermus marinus 1 0 genus 43 54253 1 0 Thermosphaera aggregans 1 54254 43 species 0 3 2307 176 family 0 0 genus 54247 56 1 0 Hyperthermus butylicus 1 54248 56 species 1 genus 54251 66 0 0 54252 66 species Pyrolobus fumarii 1 0 54 2308 genus 1 1 Pyrodictium delaneyi species 1273541 54 0 2 order 272 871006 0 1 165 255472 family 0 1 165 200414 genus 0 1 Caldisphaera lagunensis species 165 200415 0 1 family 107 871007 0 genus 105850 107 1 0 242703 107 species Acidilobus saccharovorans 1 0 Thermoproteales 15 1092 2266 6 order 0 1 family 114378 624 5 0 Thermofilum 5 2268 624 genus 2 0 1 0 Thermofilum carboxyditrophus 1 225 1483572 species Thermofilum uzonense 1 29 1550241 species 0 Thermofilum adornatus 1 1365176 211 species 0 1 Thermofilum pendens species 2269 157 0 0 1 Thermoproteaceae 9 462 2267 family 10 3 Vulcanisaeta 3 genus 164450 151 1 0 0 78 164451 species Vulcanisaeta distributa 1 0 985052 70 species Vulcanisaeta moutnovskia 1 96 76886 genus 1 0 0 species 96 76887 1 Caldivirga maquilingensis 0 1 Thermoproteus 3 147 2270 15 genus 71 2271 species Thermoproteus tenax 1 0 1 Thermoproteus uzoniensis species 61 184117 0 0 1 genus 58 2276 2277 58 species Pyrobaculum islandicum 1 0 Sulfolobales 9 2281 1568 order 1 0 1 family 1567 118883 8 0 0 genus 2284 748 3 0 species 81 2285 1 Sulfolobus acidocaldarius 1 Sulfolobus islandicus species 580 43080 0 1 87 2641160 no rank 0 87 1891280 species Sulfolobus sp. A20 1 0 2 190 41980 genus 0 1 Metallosphaera cuprina species 87 1006005 0 0 103 43687 species Metallosphaera sedula 1 0 1 202 2100760 genus 1 Sulfolobus solfataricus species 202 2287 0 0 1 genus 69655 160 0 species 111955 160 1 Sulfolobus tokodaii 0 genus 267 12914 1 0 1 Acidianus hospitalis species 563177 267