members magnitude magnitudeUnassigned count unassigned taxon rank score nmdc_.report 30 23074 Pseudomonas pseudoalcaligenesVibrio shiloniiAzoarcus sp. BH72Xanthomonas gardneriNocardia soliSolibacteresBradyrhizobium sp. S23321YangiaKlebsiella sp. 2N3Arthrobacter sp. A3Burkholderia sp. CCGE1002Frankia symbiont of Datisca glomerataAeromonas sp. O23Ahalophilic archaeon True-ADLMethanobacterium sp. MO-MB1Streptomyces sp. SCSIO 03032Candidatus Saccharibacteria oral taxon TM7xCampylobacter sp. NCTC 13003Acidovorax sp. NA2Acidovorax sp. P3Acidovorax sp. P4ThiobacimonasSerratia sp. YD25Burkholderia sp. OLGA172Parabacteroides sp. YL27Enterobacter cloacae complex sp. 35734Natrialbaceae archaeon JW/NM-HA 15Cupriavidus sp. NH9Laceyella sp. FBKL4.010Thalassococcus sp. SH-1 11947130 4529 0 11894884 Bacteria 1 2 superkingdom 4244 64 40117 phylum 14 0 2064 Nitrospira 2064 0 1 3 class 14 203693 189778 18 order 13 1 0 Nitrospirales 2061 189779 18 12 family 1 0 2043 Nitrospiraceae 1 2 genus 1 28261 Thermodesulfovibrio 195 0 194 Thermodesulfovibrio yellowstonii 0 1 species 28262 179 4 genus 2 1 0 790 Leptospirillum 0 256 261385 1 species group 1 species 1660083 256 Leptospirillum sp. Group II 'CF-1' 0 1 species group 261386 206 0 178606 1 species 0 206 Leptospirillum ferriphilum 655606 species group 1 0 326 180 1 species 0 326 Leptospirillum ferrooxidans 13 5 genus 1234 1 1040 Nitrospira 0 0 259 Nitrospira defluvii 330214 1 species 42253 1 species 0 372 Nitrospira moscoviensis 1715989 species 1 0 Candidatus Nitrospira inopinata 179 1325564 species 1 0 217 Nitrospira japonica 200930 7 phylum 0 1546 11 class 7 68337 1 Deferribacteres 1546 0 191393 8 order 6 1 0 1535 Deferribacterales 1527 Deferribacteraceae 0 1 12 family 5 191394 0 369 545865 genus 1 species 1 477976 369 Calditerrivibrio nitroreducens 0 0 251 2351 genus 1 Flexistipes sinusarabici 251 0 1 species 2352 0 403 53572 genus 1 403 Deferribacter desulfuricans 0 species 1 197162 1 genus 117999 492 0 Denitrovibrio acetiphilus 492 0 1 species 118000 2581 0 10 phylum 508458 1 649775 3 10 class 0 Synergistia 2581 1 649776 order 9 7 0 Synergistales 2578 2571 Synergistaceae 0 31 8 family 649777 1 336260 1 genus 0 149 1 species 336261 Thermovirga lienii 149 0 2 genus 2 81461 1 Thermanaerovibrio 202 0 0 Thermanaerovibrio acidaminovorans 200 81462 1 species genus 2 1 508459 1 1674 Cloacibacillus 0 1197717 1 species 0 1673 Cloacibacillus porcorum 49894 1 genus 0 166 Acetomicrobium mobile 166 0 1 species 97477 0 349 81466 genus 1 species 1 81468 349 Aminobacterium colombiense 0 2138240 1 phylum 0 204 class 1 2138243 204 0 1 order 2138246 204 0 2138247 1 family 0 204 0 204 68335 genus 1 Coprothermobacter proteolyticus 204 0 1 species 35786 1783272 clade 1659 0 3290460 471 0 2 phylum 67819 1663419 2 class 0 471 2 order 1663425 471 0 1 1663426 1 family 2 0 471 Fimbriimonadaceae 1005038 1 genus 0 470 1005039 1 species 0 Fimbriimonas ginsengisoli 470 0 Tenericutes 15557 544448 phylum 100 2 1 0 1321 713063 2 no rank 1 species 1911684 Tenericutes bacterium MO-XQ 655 0 1 species 1911683 Tenericutes bacterium MZ-XQ 666 0 0 271 2799557 1 no rank 0 271 1912503 1 genus 2624196 1 no rank 0 271 1 species 1541959 Candidatus Izimaplasma sp. HR1 271 0 0 Mollicutes 13963 31969 96 class 12 1 1 order 43 1 2085 Mycoplasmatales 5065 0 Mycoplasmataceae 5064 0 7 42 family 2092 1 1501 0 genus 12 2767358 29553 1 species 0 150 Mycoplasma bovirhinis 171 Mycoplasma canis 0 1 species 29555 288 Mycoplasma bovis 0 1 species 28903 1 species 2094 68 Mycoplasma arginini 0 0 Mycoplasma pulmonis 85 2107 1 species 0 140 Mycoplasma cynos 171284 1 species 0 121 Mycoplasma agalactiae 2110 species 1 75 Mycoplasma fermentans 0 species 1 2115 0 66 Mycoplasma pullorum 48003 1 species 2109 species 1 0 Mycoplasma synoviae 172 0 Mycoplasma californicum 38 2113 1 species Mycoplasma bovigenitalium 127 0 1 species 2112 2 genus 2129 147 0 0 Ureaplasma urealyticum 58 2130 1 species 134821 1 species 0 89 Ureaplasma parvum 73 27 genus 2093 1 Mycoplasma 3409 0 27 Mycoplasma genitalium 0 1 species 2097 1 species 29554 196 Mycoplasma canadense 0 Mycoplasma haemofelis 34 0 species 1 29501 51365 species 1 0 Mycoplasma yeatsii 248 48 Mycoplasma pneumoniae 0 1 species 2104 Mycoplasma crocodyli 100 0 1 species 50052 1 species 45362 Mycoplasma bovoculi 133 0 0 224 Mycoplasma dispar 86660 species 1 1 species 171632 Mycoplasma ovis 45 0 Mycoplasma flocculare 42 0 1 species 2128 80 Mycoplasma arthritidis 0 1 species 2111 0 Mycoplasma haemocanis 17 136241 1 species 1 species 2100 Mycoplasma hyorhinis 131 0 0 139 2683645 1 no rank 1749074 species 1 0 Mycoplasma sp. (ex Biomphalaria glabrata) 139 2099 1 species 0 Mycoplasma hyopneumoniae 73 species 1 984991 Mycoplasma parvum 25 0 1 species 2098 Mycoplasma hominis 161 0 Mycoplasma penetrans 146 0 1 species 28227 656088 species group 3 0 817 287 Mycoplasma capricolum 0 species 1 2095 0 314 Mycoplasma mycoides 2102 1 species 1 species 2105 Mycoplasma leachii 216 0 65123 1 species 0 19 Mycoplasma wenyonii 0 202 Mycoplasma gallisepticum 2096 1 species 57372 1 species 0 114 Mycoplasma suis 2123 1 species 0 165 Mycoplasma putrefaciens Mycoplasma mobile 150 0 species 1 2118 2111 Acholeplasmatales 0 3 13 order 186329 1 2108 Acholeplasmataceae 0 12 family 4 2146 1 1 5 genus 26 2147 1507 Acholeplasma 0 0 Acholeplasma palmae 479 38986 1 species 2148 1 species 0 264 Acholeplasma laidlawii Acholeplasma oculi 333 0 1 species 35623 species 1 61635 405 Acholeplasma brassicae 0 597 Candidatus Phytoplasma 0 1 6 genus 3 33926 85630 1 species group 0 50 50 Candidatus Phytoplasma mali 0 1 species 37692 381 0 3 species group 85620 229545 1 species 0 79 Aster yellows witches'-broom phytoplasma 192 Maize bushy stunt phytoplasma 0 1 species 202462 110 Onion yellows phytoplasma 0 1 species 100379 0 163 85632 1 species group 59748 1 species 0 Candidatus Phytoplasma australiense 163 0 6775 Entomoplasmatales 1 186328 7 39 order 0 Spiroplasmataceae 5185 1 2131 family 24 50 1 2132 20 genus 23 0 5135 Spiroplasma 216938 1 species 0 Spiroplasma helicoides 328 Spiroplasma cantharicola 188 0 species 1 362837 0 200 Spiroplasma corruscae 216934 1 species 0 191 Spiroplasma diminutum 216936 1 species 1 species 216942 774 Spiroplasma litorale 0 2144 1 species 0 Spiroplasma mirum 173 156 Spiroplasma monobiae 0 1 species 2136 Spiroplasma sabaudiense 193 0 1 species 216944 216945 species 1 0 90 Spiroplasma syrphidicola 0 224 Spiroplasma chrysopicola 216933 1 species 180 Spiroplasma apis 0 1 species 2137 Spiroplasma culicicola 326 0 species 1 216935 Spiroplasma kunkelii 209 0 1 species 47834 1 species 2145 Spiroplasma taiwanense 363 0 199 Spiroplasma eriocheiris 0 1 species 315358 1 species 1114980 Spiroplasma atrichopogonis 179 0 1 species 2133 94 Spiroplasma citri 0 2637901 no rank 2 0 192 1914410 1 species 0 96 Spiroplasma sp. NBRC 100390 1 species 1898044 Spiroplasma sp. TU-14 96 0 0 394 Spiroplasma floricola 216937 1 species 1 species 216946 206 Spiroplasma turonicum 0 2139 species 1 0 Spiroplasma clarkii 256 33925 3 14 family 1 0 Entomoplasmataceae 1583 1 5 genus 16 46238 Entomoplasma 464 0 215578 1 species 0 102 Entomoplasma somnilux 0 86 Entomoplasma luminosum 214888 1 species 74700 1 species 0 99 Entomoplasma freundtii 1 species 81459 Entomoplasma melaleucae 161 0 0 1116 Mesoplasma 46239 genus 8 24 1 0 Mesoplasma entomophilum 77 2149 1 species 1 species 216427 Mesoplasma chauliocola 181 0 species 1 138853 171 Mesoplasma lactucae 0 219745 1 species 0 44 Mesoplasma tabanidae 0 294 Mesoplasma florum 2151 1 species 225999 species 1 0 Mesoplasma syrphidae 224 101 Mesoplasma coleopterae 0 1 species 324078 10327 0 36 phylum 1297 10327 Deinococci 0 52 36 class 188787 1 1 68933 31 17 order 0 2889 Thermales 0 Thermaceae 2858 1 188786 16 family 10 208447 4 2 genus 1 0 629 Oceanithermus species 1 187137 Oceanithermus profundus 625 0 Marinithermus 133 0 2 genus 1 186191 1 186192 1 species 0 132 Marinithermus hydrothermalis 1 270 8 genus 37 0 Thermus 1471 1 species 274 Thermus thermophilus 414 0 37636 species 1 0 Thermus scotoductus 91 1 no rank 2619321 256 0 256 Thermus sp. CCB_US3_UF1 0 1 species 1111069 456163 1 species 0 136 Thermus parvatiensis 56956 1 species 0 Thermus brockianus 96 1 species 56957 Thermus oshimai 175 0 Thermus aquaticus 266 0 1 species 271 0 615 Meiothermus 1 65551 3 genus 5 1 species 277 Meiothermus ruber 296 0 Meiothermus silvanus 314 0 1 species 52022 2762275 order 3 0 400 0 400 Trueperaceae 332247 5 3 family 1 Truepera 395 0 1 2 genus 2 332248 0 393 Truepera radiovictrix 332249 species 1 Deinococcales 6986 0 15 order 117 118964 1 26 family 14 183710 1 6869 Deinococcaceae 0 1 13 genus 66 1298 Deinococcus 6843 0 362 Deinococcus puniceus 0 1 species 1182568 0 Deinococcus peraridilitoris 362 432329 1 species 1309411 1 species 0 679 Deinococcus soli Cha et al. 2016 55148 1 species 0 794 Deinococcus proteolyticus 1 species 68909 Deinococcus geothermalis 451 0 1 species 502394 Deinococcus gobiensis 834 0 0 Deinococcus radiodurans 415 1299 1 species Deinococcus maricopensis 577 0 1 species 309887 1 species 1768108 Deinococcus actinosclerus 560 0 0 495 2623546 no rank 1 Deinococcus sp. NW-56 495 0 species 1 2080419 1 species 1182571 875 Deinococcus swuensis 0 1 species 310783 Deinococcus deserti 373 0 2832487 Firmicutes 0 1 163 701 phylum 1239 767 0 2 no rank 33974 3 2 genus 1930845 1 767 Ndongobacter 0 1 species 1871025 764 Ndongobacter massiliensis 0 Tissierellia 7622 0 1 class 15 1 1737404 1737407 no rank 1 0 515 0 515 1582879 1 genus 1852374 1 species 0 Ezakiella massiliensis 515 Tissierellales 7106 0 13 order 25 1737405 1 2 family 2042895 451 0 451 Gottschalkia 0 2 genus 1 1505664 1 Gottschalkia acidurici 450 0 1 species 1556 1570339 family 10 1105 1 0 Peptoniphilaceae 6630 0 Murdochiella 1632 1 1161127 1 genus 2 0 Murdochiella vaginalis 1631 1852373 species 1 1 genus 2 8 150022 1104 Finegoldia 0 1 species 1260 Finegoldia magna 1096 0 618 0 1 genus 162289 1 no rank 2637196 618 0 1912856 species 1 0 618 Peptoniphilus sp. ING2-D1G 1110 Parvimonas 0 8 2 genus 543311 1 33033 1 species 0 Parvimonas micra 1102 165779 genus 2 0 1061 33034 1 species 0 671 Anaerococcus prevotii 1870984 1 species 0 Anaerococcus mediterraneensis 390 Limnochordia 710 0 1 class 5 6 1676648 1676649 order 4 11 1 0 Limnochordales 704 1676650 5 family 3 1 0 693 Limnochordaceae 688 Limnochorda 0 6 2 genus 1676651 1 1 species 1555112 Limnochorda pilosa 682 0 0 337297 Bacilli 1 91061 152 421 class 1 733 order 160 186826 Lactobacillales 161779 0 Carnobacteriaceae 3279 0 1 7 family 10 186828 2 2 genus 191769 1 465 Marinilactibacillus 0 1 no rank 2632303 463 0 1 species 1911586 463 Marinilactibacillus sp. 15R 0 726 0 genus 2 1470540 322 0 no rank 1 2621505 0 Jeotgalibaca sp. PTS2502 322 1903686 1 species species 1 708126 Jeotgalibaca dankookensis 404 0 0 2081 Carnobacterium 2747 1 5 genus 1 no rank 2 257487 1094 0 1 species 208596 Carnobacterium sp. 17-4 641 0 1 species 1564681 Carnobacterium sp. CP1 453 0 species 1 147709 421 Carnobacterium inhibens 0 565 Carnobacterium maltaromaticum 0 1 species 2751 0 297 263855 no rank 1 1 species 1993866 297 Lactobacillales bacterium 0 81850 16 family 0 5850 1 46255 2 6 genus 0 Weissella 3857 1249 1 species 0 148 Weissella paramesenteroides 0 Weissella jogaejeotgali 194 1631871 1 species 1 species 759620 Weissella ceti 222 0 Weissella cibaria 3134 0 1 species 137591 1 species 165096 Weissella koreensis 157 0 4 9 genus 1243 1 Leuconostoc 1775 0 1252 1 species 0 110 Leuconostoc carnosum Leuconostoc mesenteroides 659 0 1 species 1245 136609 1 species 0 167 Leuconostoc kimchii Leuconostoc gelidum 254 0 1 species 1244 1 species 33964 251 Leuconostoc citreum 0 1 no rank 2685106 143 0 0 Leuconostoc sp. C2 143 979982 1 species Leuconostoc lactis 81 0 species 1 1246 0 106 Leuconostoc garlicum 255248 1 species 1 genus 46254 218 0 1247 species 1 0 Oenococcus oeni 218 81852 58 family 18 1 0 Enterococcaceae 16242 0 13582 Enterococcus 1 1350 312 12 genus 1352 1 species 0 Enterococcus faecium 6193 0 Enterococcus hirae 1010 1354 1 species 3 no rank 2608891 1335 0 1 species 2057791 Enterococcus sp. CR-Ec1 385 0 1 species 2060307 539 Enterococcus sp. FDAARGOS_375 0 0 Enterococcus sp. FDAARGOS_163 411 2060306 1 species 390 Enterococcus thailandicus 0 1 species 417368 53345 1 species 0 Enterococcus durans 881 1648 Enterococcus faecalis 0 1 species 1351 Enterococcus casseliflavus 574 0 1 species 37734 0 Enterococcus wangshanyuanii 759 2005703 1 species 1 species 53346 480 Enterococcus mundtii 0 1 6 3 genus 2737 Vagococcus 869 0 1 species 519472 Vagococcus teuberi 331 0 633807 species 1 0 532 Vagococcus penaei 51668 genus 1 0 1462 51669 1 species 0 Tetragenococcus halophilus 1462 0 271 33969 1 genus 0 271 Melissococcus plutonius 33970 1 species 0 2763 186827 7 family 1375 genus 7 28 1 0 Aerococcus 2763 species 1 1376 745 Aerococcus urinae 0 87541 species 1 0 Aerococcus christensenii 431 1 species 128944 Aerococcus urinaehominis 184 0 417 Aerococcus sanguinicola 0 1 species 119206 Aerococcus viridans 370 0 species 1 1377 1 species 51665 Aerococcus urinaeequi 588 0 1 698 49 family 1300 105926 Streptococcaceae 0 1 43 genus 837 1301 98764 Streptococcus 0 37443 Streptococcus suis 0 1 species 1307 0 344 Streptococcus merionis 400065 1 species Streptococcus gordonii 1121 0 1 species 1302 species 1 1346 Streptococcus iniae 442 0 514 Streptococcus macedonicus 0 1 species 59310 1 species 1313 Streptococcus pneumoniae 2105 0 1308 1 species 0 1033 Streptococcus thermophilus Streptococcus lutetiensis 1506 0 1 species 150055 Streptococcus salivarius 2480 0 species 1 1304 0 3517 2608887 no rank 7 712633 1 species 0 Streptococcus sp. oral taxon 431 389 1156433 1 species 0 Streptococcus sp. I-P16 771 0 640 Streptococcus sp. FDAARGOS_192 1839799 species 1 0 731 Streptococcus sp. I-G2 1156431 1 species 1 species 1319 218 Streptococcus sp. 'group B' 0 0 Streptococcus sp. A12 416 1759399 1 species 1902136 1 species 0 Streptococcus sp. NPS 308 352 1309 1 species 0 Streptococcus mutans 572 2 species group 119603 1262 0 Streptococcus equi 868 0 1 species 1336 394 Streptococcus dysgalactiae 0 1 species 1334 0 267 Streptococcus uberis 1349 1 species 609 Streptococcus equinus 0 1 species 1335 0 Streptococcus acidominimus 411 1326 1 species 1 species 197614 Streptococcus pasteurianus 2012 0 1 species 1814128 534 Streptococcus halotolerans 0 315405 1 species 0 936 Streptococcus gallolyticus 0 Streptococcus agalactiae 15684 1311 1 species Streptococcus pantholopis 560 0 1 species 1811193 Streptococcus cristatus 435 0 1 species 45634 196 Streptococcus pluranimalium 0 1 species 82348 1875 Streptococcus parasanguinis 0 species 1 1318 0 496 Streptococcus marmotae 1825069 species 1 13384 0 species group 3 671232 9114 Streptococcus anginosus 0 1 species 1328 0 Streptococcus constellatus 2952 76860 species 1 species 1 1338 Streptococcus intermedius 1318 0 257758 1 species 0 495 Streptococcus pseudopneumoniae 1888195 1 species 0 456 Streptococcus himalayensis 0 Streptococcus sanguinis 520 1305 1 species 1303 1 species 0 Streptococcus oralis 1305 28037 1 species 0 Streptococcus mitis 1507 1348 1 species 0 Streptococcus parauberis 673 Streptococcus pyogenes 1367 0 1 species 1314 1866 Streptococcus infantarius 0 species 1 102684 1 1357 4 5 genus 0 6464 Lactococcus Lactococcus garvieae 3636 0 species 1 1363 1 species 1364 Lactococcus piscium 313 0 1366 1 species 0 Lactococcus raffinolactis 274 species 1 1358 Lactococcus lactis 2237 0 26689 Lactobacillaceae 0 44 family 58 33958 1 2767842 3 genus 0 2180 1 species 60520 Lactobacillus paraplantarum 144 0 1590 1 species 0 Lactobacillus plantarum 1627 1589 1 species 0 409 Lactobacillus pentosus 2742598 genus 3 0 1657 Lactobacillus reuteri 673 0 1 species 1598 97478 1 species 0 553 Lactobacillus mucosae 1613 1 species 0 Lactobacillus fermentum 431 2767885 genus 2 0 1240 724 Lactobacillus curvatus 0 species 1 28038 1 species 1599 Lactobacillus sakei 516 0 2973 0 genus 4 2767887 0 Lactobacillus ruminis 1185 1623 1 species 1055 Lactobacillus salivarius 0 1 species 1624 0 320 Lactobacillus acidipiscis 89059 1 species 0 Lactobacillus agilis 413 1601 1 species 2767892 1 genus 0 206 240427 1 species 0 206 Lactobacillus paracollinoides 3 genus 2767893 810 0 1 species 1581 Lactobacillus buchneri 301 0 1 species 1138822 265 Lactobacillus curieae 0 152331 1 species 0 Lactobacillus parabuchneri 244 2767881 genus 2 0 769 53444 1 species 0 Lactobacillus lindneri 121 1625 1 species 0 648 Lactobacillus sanfranciscensis 2767886 3 genus 0 1129 1 species 1580 412 Lactobacillus brevis 0 1 species 267363 166 Lactobacillus zymae 0 0 Lactobacillus koreensis 551 637971 species 1 6 genus 2767879 2170 0 1 species 1074467 Lactobacillus heilongjiangensis 368 0 Lactobacillus alimentarius 276 0 1 species 1602 1 species 1612 Lactobacillus farciminis 424 0 Lactobacillus ginsenosidimutans 336 0 1 species 1007676 415 Lactobacillus allii 0 species 1 1847728 392416 1 species 0 Lactobacillus crustorum 351 Lactobacillus 7815 0 16 genus 290 1578 1 1 species 109790 640 Lactobacillus jensenii 0 1 species 267818 Lactobacillus kefiranofaciens 201 0 1 species 1587 Lactobacillus helveticus 714 0 809 Lactobacillus amylovorus 0 1 species 1604 species 1 52242 351 Lactobacillus gallinarum 0 0 Lactobacillus amylolyticus 383 83683 1 species Lactobacillus acetotolerans 271 0 1 species 1600 0 1025 Lactobacillus johnsonii 33959 1 species 1579 1 species 0 277 Lactobacillus acidophilus 558 0 4 no rank 2620435 0 154 Lactobacillus sp. CBA3606 2099789 1 species 0 142 Lactobacillus sp. D1501 2108362 1 species 0 124 Lactobacillus sp. CBA3605 2099788 1 species 1545702 1 species 0 Lactobacillus sp. wkB8 138 1 species 1596 Lactobacillus gasseri 725 0 1 species 1584 1571 Lactobacillus delbrueckii 0 2767877 genus 1 0 173 0 173 Lactobacillus kunkeei 148814 1 species 2 genus 2767889 801 0 458 Lactobacillus coryniformis 0 1 species 1610 0 343 Lactobacillus backii 375175 species 1 2759736 3 genus 0 2234 0 673 Lactobacillus rhamnosus 47715 1 species 1597 species 1 0 517 Lactobacillus paracasei 1582 1 species 0 Lactobacillus casei 1044 232 0 1 genus 2767890 232 Lactobacillus hokkaidonensis 0 species 1 1193095 1 6 genus 1253 1 Pediococcus 1766 0 Pediococcus damnosus 394 0 species 1 51663 376 Pediococcus claussenii 0 1 species 187452 1 species 114090 Pediococcus inopinatus 194 0 275 0 species group 1 1670797 1254 1 species 0 Pediococcus acidilactici 275 526 Pediococcus pentosaceus 0 1 species 1255 1 genus 2767876 490 0 490 Lactobacillus amylophilus 0 species 1 1603 1 1385 260 order 317 0 Bacillales 175366 186821 2 family 1 1 0 Sporolactobacillaceae 787 663587 no rank 1 0 786 species 1 85683 [Bacillus] selenitireducens 786 0 115 family 124 186817 1 Bacillaceae 81977 0 1386 1986 58 genus 1 0 Bacillus 52863 530 Bacillus horikoshii 0 1 species 79883 19 no rank 185979 8311 0 0 Bacillus sp. FJAT-14266 764 1837130 1 species Bacillus sp. JS 346 0 species 1 1127744 563169 1 species 0 Bacillus sp. SJ-10 517 1774743 species 1 0 Bacillus sp. SDLI1 619 1574141 1 species 0 Bacillus sp. YP1 259 0 Bacillus sp. Pc3 425 1446792 1 species 0 124 Bacillus sp. (in: Bacteria) 1409 1 species 756828 1 species 0 388 Bacillus sp. WP8 2009331 1 species 0 156 Bacillus sp. MD-5 1570330 1 species 0 Bacillus sp. BH072 284 Bacillus sp. 1s-1 509 0 species 1 2026248 1856406 1 species 0 Bacillus sp. H15-1 509 666686 1 species 0 1069 Bacillus sp. 1NLA3E 1941347 1 species 0 491 Bacillus sp. 275 1 species 1628753 140 Bacillus sp. LM 4-2 0 Bacillus sp. Lzh-5 136 0 species 1 2049935 Bacillus sp. IHB B 7164 572 0 1 species 1827146 1 species 1565991 Bacillus sp. X1(2014) 660 0 Bacillus sp. OxB-1 343 0 species 1 98228 33932 1 species 0 Bacillus cohnii 359 1792192 1 species group 0 386 Bacillus altitudinis 386 0 1 species 293387 Bacillus cellulosilyticus 513 0 1 species 1413 15136 0 10 species group 86661 1396 1 species 0 Bacillus cereus 5107 1 species 155322 304 Bacillus toyonensis 0 3 no rank 2750818 1713 0 1892404 1 species 0 Bacillus sp. ABP14 477 1839798 1 species 0 Bacillus sp. FDAARGOS_235 742 2053832 species 1 0 494 Bacillus sp. HBCD-sjtu 1539 Bacillus mycoides 0 1 species 1405 1 species 1428 Bacillus thuringiensis 4779 0 Bacillus bombysepticus 625 0 1 species 658666 1 species 580165 Bacillus cytotoxicus 529 0 1 species 1392 540 Bacillus anthracis 0 1404 1 species 0 1434 Bacillus megaterium 11521 0 species group 9 653685 119858 1 species 0 787 Bacillus sonorensis 1423 1 species 0 3345 Bacillus subtilis 1 species 72361 112 Bacillus vallismortis 0 0 4341 1938374 3 species subgroup 492670 1 species 0 Bacillus velezensis 1624 1 species 659243 Bacillus siamensis 585 0 0 2132 Bacillus amyloliquefaciens 1390 1 species 0 Bacillus atrophaeus 978 1452 1 species 853 Bacillus licheniformis 0 1 species 1402 species 1 1648923 Bacillus paralicheniformis 1105 0 species 1 1664069 1026 Bacillus glycinifermentans 0 1408 1 species 0 2165 Bacillus pumilus 0 479 Bacillus xiamenensis 1178537 1 species 1 species 1471 Bacillus methanolicus 789 0 1 species 135735 1242 Bacillus endophyticus 0 0 455 Bacillus smithii 1479 1 species 1 species 1398 1701 Bacillus coagulans 0 1 species 1547283 Bacillus weihaiensis 839 0 1 species 632773 Bacillus beveridgei 566 0 Bacillus safensis 827 0 species 1 561879 1 species 412384 583 Bacillus aryabhattai 0 324767 1 species 0 Bacillus infantis 895 0 934 Bacillus flexus 86664 1 species Bacillus gibsonii 186 0 1 species 79881 genus 1 182709 865 0 1 species 182710 865 Oceanobacillus iheyensis 0 Anoxybacillus 2876 0 1 45 6 genus 150247 Anoxybacillus amylolyticus 334 0 1 species 294699 2 no rank 2639704 1274 0 1 species 1490052 Anoxybacillus sp. B2M1 695 0 0 Anoxybacillus sp. B7M1 579 1490057 1 species 198467 1 species 0 Anoxybacillus gonensis 278 945 Anoxybacillus flavithermus 0 1 species 33934 720 0 genus 1 175304 720 Lentibacillus amyloliquefaciens 0 1 species 1472767 45667 genus 2 0 1293 0 775 Halobacillus mangrovi 402384 species 1 1570 1 species 0 Halobacillus halophilus 518 2 genus 2675230 1295 0 1 species 859143 423 Bacillus kochii 0 872 Bacillus oceanisediminis 0 1 species 665099 436 0 genus 1 351195 1230341 1 species 0 436 Salimicrobium jeotgali 1 genus 5 13 400634 Lysinibacillus 3526 0 0 1300 Lysinibacillus sphaericus 1421 1 species 0 675 2636778 1 no rank species 1 2072025 675 Lysinibacillus sp. YS11 0 0 Lysinibacillus varians 756 1145276 1 species 0 782 Lysinibacillus fusiformis 28031 1 species 0 747 1906945 genus 1 1 species 1426 747 Parageobacillus thermoglucosidasius 0 0 1669 2675229 2 genus 1 species 264697 436 Bacillus muralis 0 1 species 1478 1233 Bacillus simplex 0 0 413 1055323 1 genus 33936 1 species 0 413 Aeribacillus pallidus Terribacillus 624 0 1 2 genus 459532 1 586416 species 1 0 Terribacillus aidingensis 623 2965 0 5 genus 2675234 86665 species 1 0 373 Bacillus halodurans 0 Bacillus pseudofirmus 690 79885 1 species Bacillus lehensis 683 0 1 species 300825 1 species 79880 Bacillus clausii 764 0 455 Bacillus krulwichiae 0 1 species 199441 1355 Fictibacillus 0 22 3 genus 1329200 1 0 691 Fictibacillus phosphorivorans 1221500 1 species 1 species 255247 642 Fictibacillus arsenicus 0 0 Geobacillus 6004 129337 15 genus 502 1 Geobacillus genomosp. 3 397 0 species 1 1921421 129338 1 species 0 Geobacillus subterraneus 292 0 2301 2642459 6 no rank 691437 1 species 0 Geobacillus sp. C56-T3 306 1 species 581103 584 Geobacillus sp. Y4.1MC1 0 species 1 550542 234 Geobacillus sp. Y412MC52 0 0 Geobacillus sp. GHH01 331 1233873 1 species 471223 species 1 0 Geobacillus sp. WCH70 581 Geobacillus sp. Y412MC61 265 0 species 1 544556 330 Geobacillus thermodenitrificans 0 species 1 33940 0 1639 1505648 species group 4 819 Geobacillus thermoleovorans 0 species 1 33941 169283 1 species 0 Geobacillus lituanicus 233 species 1 33938 370 Geobacillus thermocatenulatus 0 0 217 Geobacillus kaustophilus 1462 1 species 543 Geobacillus stearothermophilus 0 species 1 1422 0 Virgibacillus 3320 1 84406 7 genus 1 2017483 1 species 0 435 Virgibacillus phasianinus 0 488 Virgibacillus necropolis 163877 species 1 0 1073 2620237 no rank 2 Virgibacillus sp. SK37 460 0 1 species 403957 Virgibacillus sp. 6R 613 0 1 species 1911587 1482 1 species 0 Virgibacillus halodenitrificans 535 0 Virgibacillus pantothenticus 788 1473 1 species 1 2 genus 21 29331 Amphibacillus 882 0 Amphibacillus xylanus 861 0 species 1 1449 1 22 family 9 186823 3684 Alicyclobacillaceae 0 0 Kyrpidia 564 1 1129704 59 genus 3 0 Kyrpidia tusciae 247 33943 1 species 0 258 Kyrpidia sp. EA-1 2055160 1 species 1194 Alicyclobacillus 0 1 2 genus 10 29330 0 1184 Alicyclobacillus acidocaldarius 405212 species 1 0 Tumebacillus 1904 1 432330 14 3 genus 1214604 1 species 0 726 Tumebacillus algifaecis 1 species 1903704 1164 Tumebacillus avium 0 0 4810 Listeriaceae 1 186820 family 8 6 1637 53 genus 6 1 0 4230 Listeria Listeria welshimeri 602 0 species 1 1643 Listeria ivanovii 866 0 1 species 1638 0 444 Listeria innocua 1642 species 1 1640 Listeria monocytogenes 0 species 1 1639 1640 species 1 0 Listeria seeligeri 625 0 574 2755 1 genus Brochothrix thermosphacta 574 0 1 species 2756 Staphylococcaceae 18031 0 42 family 232 90964 1 Staphylococcus 15713 0 200 genus 33 1279 1 308354 1 species 0 402 Staphylococcus simiae 29382 1 species 0 321 Staphylococcus cohnii species 1 29385 461 Staphylococcus saprophyticus 0 0 678 91994 no rank 1 1715860 1 species 0 678 Staphylococcus sp. AntiMn-1 0 Staphylococcus carnosus 252 1281 1 species Staphylococcus pettenkoferi 436 0 species 1 170573 0 599 Staphylococcus hyicus 1284 1 species species 1 1286 553 Staphylococcus simulans 0 Staphylococcus agnetis 423 0 1 species 985762 0 240 Staphylococcus muscae 1294 1 species 1 species 1282 Staphylococcus epidermidis 542 0 0 Staphylococcus kloosii 234 29384 species 1 0 Staphylococcus pasteuri 541 45972 1 species 70255 species 1 0 478 Staphylococcus condimenti 1290 1 species 0 Staphylococcus hominis 281 0 Staphylococcus lugdunensis 251 28035 1 species 1 species 1283 440 Staphylococcus haemolyticus 0 29388 1 species 0 Staphylococcus capitis 220 Staphylococcus schleiferi 582 0 1 species 1295 1 species 214473 223 Staphylococcus nepalensis 0 1 species 1296 485 Staphylococcus sciuri 0 0 Staphylococcus xylosus 704 1288 1 species 0 Staphylococcus equorum 506 246432 1 species 70258 species 1 0 466 Staphylococcus piscifermentans 155085 1 species 0 Staphylococcus lutrae 256 46127 species 1 0 280 Staphylococcus felis species 1 643214 522 Staphylococcus stepanovicii 0 1 species 1280 Staphylococcus aureus 1996 0 species 1 1292 465 Staphylococcus warneri 0 61015 1 species 0 584 Staphylococcus succinus 0 Staphylococcus argenteus 512 985002 1 species 283734 species 1 0 580 Staphylococcus pseudintermedius 2005363 genus 2 1 1 0 158 Auricoccucs 1 species 1849491 Auricoccus indicus 157 0 1 4 genus 8 69965 1432 Macrococcus 0 2619255 no rank 1 0 304 0 304 Macrococcus sp. IME1552 1898474 1 species 594 Macrococcus caseolyticus 0 species 1 69966 1 species 1855823 526 Macrococcus canis 0 Salinicoccus 496 0 1 2 genus 3 45669 Salinicoccus halodurans 493 0 species 1 407035 0 2578 539002 8 no rank 7 no rank 539742 1569 0 33986 22 7 genus 1 0 1569 Exiguobacterium 1 species 132920 Exiguobacterium antarcticum 341 0 973 0 4 no rank 2644629 1849031 1 species 0 Exiguobacterium sp. U13-1 270 species 1 360911 320 Exiguobacterium sp. AT1b 0 species 1 1399115 168 Exiguobacterium sp. MH3 0 0 215 Exiguobacterium sp. ZWU0009 1224749 1 species 332410 1 species 0 Exiguobacterium sibiricum 233 no rank 1 539738 1009 0 0 1009 1378 genus 1 2624949 1 no rank 0 1009 1009 Gemella sp. oral taxon 928 0 species 1 1785995 677 Thermoactinomycetaceae 0 1 4 family 4 186824 56 Laceyella 0 1 genus 292635 Novibacillus 617 0 1 genus 2 34 1677050 583 Novibacillus thermophilus 0 1 species 1471761 1 family 25 14 186818 Planococcaceae 13411 0 1372 43 12 genus 1 0 5719 Planococcus 2 no rank 2662419 1036 0 1 species 2058136 Planococcus sp. MB-3u-03 507 0 1 species 1526927 529 Planococcus sp. PAMC 21323 0 0 1221 Planococcus maritimus 192421 species 1 0 Planococcus halocryophilus 293 1215089 1 species Planococcus plakortidis 535 0 species 1 1038856 161360 1 species 0 667 Planococcus antarcticus 1 species 1374 Planococcus kocurii 315 0 species 1 200991 Planococcus rifietoensis 562 0 1 species 1302659 Planococcus sp. L10.15 345 0 1598147 1 species 0 285 Planococcus faecalis 0 Planococcus donghaensis 417 414778 1 species 0 681 648802 1 genus 681 Rummeliibacillus stabekisii 0 1 species 241244 648800 2 3 genus 1 0 1705 Solibacillus Solibacillus silvestris 996 0 species 1 76853 0 707 2637870 1 no rank species 1 2048654 707 Solibacillus sp. R5-41 0 0 777 1649 1 genus 777 0 1 no rank 2644826 species 1 1750719 777 Kurthia sp. 11kri321 0 3662 Sporosarcina 0 5 genus 14 1569 1 485 Sporosarcina psychrophila 0 species 1 1476 0 1414 Sporosarcina ureae 1571 1 species 2 no rank 2647733 1749 0 1930764 1 species 0 867 Sporosarcina sp. P33 1930546 1 species 0 Sporosarcina sp. P37 882 1 157226 2 genus 2 0 Jeotgalibacillus 853 1 species 1508404 851 Jeotgalibacillus malaysiensis 0 1 106 family 46 186822 Paenibacillaceae 49094 0 4 genus 27 55080 1 2989 Brevibacillus 0 1170 Brevibacillus laterosporus 0 1 species 1465 54913 1 species 0 Brevibacillus formosus 573 species 1 1393 1219 Brevibacillus brevis 0 76632 genus 2 13 1 0 Thermobacillus 1147 1134 Thermobacillus composti 0 1 species 377615 no rank 3 85151 1501 0 55079 3 genus 1 1 0 Aneurinibacillus 1501 1 species 1500254 685 Aneurinibacillus soli 0 0 815 2642329 no rank 1 species 1 1450761 Aneurinibacillus sp. XH2 815 0 43351 Paenibacillus 0 1 247 36 genus 44249 species 1 1870820 Paenibacillus ihbetae 1765 0 1178515 species 1 0 608 Paenibacillus swuensis 2044880 species group 1 0 1362 1362 Paenibacillus riograndensis 0 species 1 483937 0 1479 Paenibacillus borealis 160799 1 species 0 Paenibacillus beijingensis 1115 1126833 1 species 1 species 189425 1217 Paenibacillus graminis 0 Paenibacillus xylanexedens 1029 0 1 species 528191 0 3224 Paenibacillus polymyxa 1406 species 1 0 Paenibacillus yonginensis 1164 1462996 1 species 172713 1 species 0 843 Paenibacillus kribbensis 1 species 1464 616 Paenibacillus larvae 0 185978 13 no rank 0 15588 1566358 1 species 0 702 Paenibacillus sp. IHBB 10380 0 1421 Paenibacillus sp. FSL P4-0081 1536769 1 species 1536775 1 species 0 Paenibacillus sp. FSL H7-0737 802 1636 Paenibacillus sp. JDR-2 0 1 species 324057 0 1424 Paenibacillus sp. FSL R7-0273 1536772 1 species 1536774 1 species 0 1760 Paenibacillus sp. FSL H7-0357 Paenibacillus sp. FSL R5-0912 1527 0 species 1 1536771 1870819 1 species 0 Paenibacillus sp. BIHB4019 824 Paenibacillus sp. lzh-N1 742 0 1 species 2069255 1 species 1536770 795 Paenibacillus sp. FSL R5-0345 0 1695218 1 species 0 Paenibacillus sp. 32O-W 876 1527 Paenibacillus sp. FSL R7-0331 0 1 species 1536773 1 species 481743 Paenibacillus sp. Y412MC10 1552 0 159743 species 1 0 Paenibacillus terrae 1018 162209 1 species 0 1031 Paenibacillus naphthalenovorans 1616788 species 1 0 1279 Paenibacillus bovis 0 2073 Paenibacillus durus 44251 1 species 1589 Paenibacillus mucilaginosus 0 1 species 61624 1763538 1 species 0 Paenibacillus crassostreae 431 0 Paenibacillus sabinae 937 365617 1 species Paenibacillus peoriae 919 0 1 species 59893 1 species 169760 1452 Paenibacillus stellifer 0 species 1 189426 Paenibacillus odorifer 1089 0 Paenibacillus donghaensis 1276 0 1 species 414771 Clostridia 2433453 0 140 214 class 186801 1 0 2309 Halanaerobiales 53433 1 10 order 1 972 family 5 0 1434 1 3 3 genus 2330 817 Halanaerobium 0 1 species 656519 Halanaerobium hydrogeniformans 525 0 1 species 2331 289 Halanaerobium praevalens 0 32636 genus 2 4 1 0 Halothermothrix 617 1 species 31909 613 Halothermothrix orenii 0 Halobacteroidaceae 874 0 4 family 4 53434 1 0 558 Acetohalobium 1 28186 2 genus 1 1 species 28187 Acetohalobium arabaticum 557 0 312 0 genus 1 42417 42422 1 species 0 312 Halobacteroides halobius 0 519 Natranaerobiales 1 485256 order 3 3 516 0 family 2 485255 0 516 Natranaerobius 1 375928 2 genus 10 375929 1 species 0 506 Natranaerobius thermophilus 2770089 order 3 0 1606 2770092 1 family 0 612 0 612 499228 1 genus 499229 species 1 0 Tepidanaerobacter acetatoxydans 612 994 0 2 family 2770093 1 291988 2 genus 2 0 Thermosediminibacter 994 Thermosediminibacter oceani 992 0 1 species 291990 1 4016 160 order 186802 2413763 Clostridiales 0 0 Oscillospiraceae 7490 216572 3 family 4 1 Oscillibacter 7486 0 1 2 genus 5 459786 7481 Oscillibacter valericigenes 0 1 species 351091 0 1003 Symbiobacteriaceae 1 543349 10 3 family 1 2733 8 2 genus 0 Symbiobacterium 993 1 species 2734 985 Symbiobacterium thermophilum 0 1 31984 family 3 8 0 1245 Heliobacteriaceae 1237 Heliobacterium 0 1 55 2 genus 2697 1 species 35701 1182 Heliobacterium modesticaldum 0 76 27 family 186807 1 Peptococcaceae 17568 0 1 genus 2282742 1009 0 58138 1 species 0 1009 Desulfotomaculum acetoxidans 1 5 genus 35 36853 Desulfitobacterium 3582 0 36854 1 species 0 Desulfitobacterium dehalogenans 707 1 species 233055 Desulfitobacterium dichloroeliminans 704 0 0 Desulfitobacterium metallireducens 620 142877 1 species 1516 Desulfitobacterium hafniense 0 1 species 49338 genus 4 39 79206 1 2649 Desulfosporosinus 0 Desulfosporosinus meridiei 677 0 1 species 79209 1089 Desulfosporosinus acidiphilus 0 1 species 885581 Desulfosporosinus orientis 844 0 1 species 1563 51514 2 genus 2 1 0 1494 Dehalobacterium 1492 Dehalobacterium formicoaceticum 0 1 species 51515 1121 0 1 genus 51196 1 species 51197 Syntrophobotulus glycolicus 1121 0 278993 1 genus 0 829 species 1 863643 Thermincola potens 829 0 0 Dehalobacter 3035 1 56112 16 4 genus 2635733 no rank 2 0 2045 1 species 1131462 Dehalobacter sp. CF 1054 0 1 species 1147129 991 Dehalobacter sp. DCA 0 55583 1 species 0 Dehalobacter restrictus 974 1 1562 5 genus 16 0 2535 Desulfotomaculum 0 634 Desulfotomaculum ferrireducens 1833852 1 species 0 Desulfotomaculum reducens 508 59610 species 1 0 568 Desulfotomaculum nigrificans 1565 1 species 0 809 Desulfotomaculum ruminis 1564 species 1 0 Candidatus Desulforudis 510 471826 genus 2 1 1 0 Candidatus Desulforudis audaxviator 509 471827 1 species genus 1 2282740 728 0 0 728 Desulfotomaculum gibsoniae 102134 1 species 146 family 13 541000 1 Ruminococcaceae 1177966 0 1 1263 3 genus 151 0 Ruminococcus 251730 Ruminococcus albus 8022 0 1 species 1264 243557 Ruminococcus bicirculans 0 1 species 1160721 Herbivorax 4 0 1 genus 1890281 1 no rank 2305133 9742 0 species 1 1572656 Ruminococcaceae bacterium CPB6 9742 0 552397 1 no rank 0 4279 [Clostridium] cellulosi 4279 0 1 species 29343 216851 2 genus 1527 1 0 886115 Faecalibacterium 0 Faecalibacterium prausnitzii 884588 853 1 species Flavonifractor 20378 0 genus 2 28 946234 1 Flavonifractor plautii 20350 0 1 species 292800 5572 Ethanoligenens 0 2 genus 9 253238 1 5563 Ethanoligenens harbinense 0 1 species 253239 1 5 family 4 186806 Eubacteriaceae 7809 0 0 7048 Eubacterium 1730 156 2 genus 1 1736 species 1 0 6892 Eubacterium limosum 1 genus 33951 756 0 Acetobacterium woodii 756 0 1 species 33952 Lachnospiraceae 1003403 0 1 27 family 1874 186803 0 348228 186928 2 no rank 1 species 39491 [Eubacterium] rectale 338847 0 1 species 712991 Lachnospiraceae bacterium oral taxon 500 9381 0 50423 0 1 genus 28050 1 species 39485 50423 [Eubacterium] eligens 0 2569097 genus 1 0 71255 species 1 39488 [Eubacterium] hallii 71255 0 0 103013 Anaerostipes 207244 2 genus 52 1 Anaerostipes hadrus 102961 0 species 1 649756 Butyrivibrio 16545 0 3 genus 18 830 1 8748 Butyrivibrio proteoclasticus 0 1 species 43305 7779 Butyrivibrio hungatei 0 1 species 185008 83736 0 1 genus 2719313 83736 [Clostridium] bolteae 0 species 1 208479 1 698776 genus 2 1 0 Cellulosilyticum 3025 29360 1 species 0 3024 Cellulosilyticum lentocellum 2039240 2 genus 2 1 0 6476 Anaerotignum 1 species 28446 Anaerotignum propionicum 6474 0 1 2 genus 30 841 140815 Roseburia 0 301301 species 1 0 Roseburia hominis 140785 0 73525 Lachnoclostridium 1506553 genus 4 92 1 0 Lachnoclostridium phytofermentans 5427 66219 1 species 24577 Lachnoclostridium phocaeense 0 1 species 1871021 0 43429 2608895 no rank 1 species 1 1834196 43429 Lachnoclostridium sp. YL32 0 2719231 1 genus 0 37738 37738 [Clostridium] saccharolyticum 0 1 species 84030 1 36 3 genus 572511 63917 Blautia 0 1 species 1322 44431 Blautia hansenii 0 19450 0 no rank 1 2648079 Blautia sp. YL58 19450 0 1 species 1796616 1 2 genus 1663717 1 2833 Herbinix 0 Herbinix luporum 2832 0 1 species 1679721 1 245 family 41 31979 72304 Clostridiaceae 0 1 337 30 genus 1485 65967 Clostridium 0 1202 Clostridium autoethanogenum 0 1 species 84023 0 2028 Clostridium saccharobutylicum 169679 1 species 0 Clostridium butyricum 2880 1492 1 species 0 2269 Clostridium pasteurianum 1501 1 species Clostridium tetani 1080 0 1 species 1513 1520 1 species 0 Clostridium beijerinckii 3916 species 1 84022 Clostridium aceticum 1092 0 1519 1 species 0 1152 Clostridium tyrobutyricum 1862 Clostridium kluyveri 0 1 species 1534 1502 1 species 0 Clostridium perfringens 2987 0 Clostridium chauvoei 1546 46867 species 1 Clostridium argentinense 1920 0 species 1 29341 2472 Clostridium baratii 0 species 1 1561 Clostridium saccharoperbutylacetonicum 2422 0 1 species 36745 1509 species 1 0 Clostridium sporogenes 1393 species 1 217159 1328 Clostridium carboxidivorans 0 0 1339 Clostridium bornimense 1216932 1 species Clostridium cellulovorans 2319 0 1 species 1493 species 1 1497 Clostridium formicaceticum 1001 0 1085 Clostridium novyi 0 species 1 1542 1 species 1491 8107 Clostridium botulinum 0 394958 1 species 0 1439 Clostridium taeniosporum 1538 1 species 0 Clostridium ljungdahlii 1189 238834 1 species 0 Clostridium estertheticum 1594 Clostridium acetobutylicum 1099 0 1 species 1488 1494 1 species 0 Clostridium cochlearium 925 2 no rank 2614128 12411 0 0 9756 Clostridium sp. SY8519 1042156 1 species 0 Clostridium sp. BNL1100 2655 755731 species 1 Clostridium scatologenes 1573 0 1 species 1548 120 Mordavella 0 1 genus 1981033 0 Alkaliphilus 2423 1 114627 12 3 genus Alkaliphilus oremlandii 1002 0 1 species 461876 species 1 208226 1409 Alkaliphilus metalliredigens 0 1187 Candidatus Arthromitus 0 genus 4 5 49082 1 0 1182 2638829 3 no rank 1508644 1 species 0 345 Candidatus Arthromitus sp. SFB-mouse-NL 1 species 1041504 Candidatus Arthromitus sp. SFB-rat-Yit 487 0 49118 1 species 0 350 Candidatus Arthromitus sp. SFB-mouse 1 390805 5 2 genus 0 2362 Geosporobacter 0 Geosporobacter ferrireducens 2357 1424294 1 species 0 Christensenellaceae 4789 1 990719 3 family 44 0 4745 Christensenella 1 990721 2 genus 185 0 Christensenella massiliensis 4560 1805714 species 1 26511 0 family 10 2304686 1 328 2 genus 1508657 2567 Ruminiclostridium 0 1 species 1521 [Clostridium] cellulolyticum 2239 0 2172 0 genus 1 1637257 species 1 884684 2172 Mageeibacillus indolicus 0 4131 0 3 genus 2304692 species 1 288965 [Clostridium] clariflavum 1440 0 0 1154 Herbivorax saccincola 1677857 species 1 1515 species 1 0 Ruminiclostridium thermocellum 1537 1 no rank 2305130 13606 0 13606 Ruminiclostridium sp. KB18 0 species 1 1834198 1345 0 1 genus 2304691 0 [Clostridium] stercorarium 1345 1510 1 species 1 genus 2304693 2255 0 0 [Clostridium] thermosuccinogenes 2255 84032 1 species 0 435 236752 genus 1 0 435 Fastidiosipila sanguinis 236753 1 species family 4 68298 1010 0 1 2 genus 1 129001 608 Syntrophothermus 0 607 Syntrophothermus lipocalidus 0 species 1 86170 0 402 Syntrophomonas 862 2 genus 1 1 Syntrophomonas wolfei 401 0 1 species 863 0 Peptostreptococcaceae 38063 186804 11 family 166 1 1030 0 no rank 1 1411023 2081703 1 species 0 Peptostreptococcaceae bacterium oral taxon 929 1030 1870884 genus 2 71 1 0 Clostridioides 31687 1496 1 species 0 Clostridioides difficile 31616 1070 0 genus 1 1481960 1731 1 species 0 Peptoclostridium acidaminophilum 1070 0 1178 Filifactor 44259 2 2 genus 1 1176 Filifactor alocis 0 1 species 143361 1 genus 2 186831 1 Acetoanaerobium 1317 0 1316 Acetoanaerobium sticklandii 0 1 species 1511 Paeniclostridium 1615 0 1 genus 2 1 1849828 Paeniclostridium sordellii 1614 0 1 species 1505 538999 10 no rank 0 50586 0 Clostridiales Family XVII. Incertae Sedis 651 539000 1 family 3 1 0 Thermaerobacter 650 1 73918 genus 2 2 73919 species 1 0 648 Thermaerobacter marianensis Intestinimonas 19752 0 1 2 genus 214 1392389 0 19538 Intestinimonas butyriciproducens 1297617 1 species 1 543314 4 family 9 0 3640 Clostridiales Family XIII. Incertae Sedis 0 2063 [Eubacterium] sulci 143393 1 species 3 genus 2 86331 1 1568 Mogibacterium 0 1 species 114527 1565 Mogibacterium diversum 0 1 genus 2717089 26543 0 26543 Mordavella sp. Marseille-P3756 0 1 species 2086584 order 37 5 68295 1 Thermoanaerobacterales 15116 0 448 Thermoanaerobacterales Family IV. Incertae Sedis 0 1 family 3 3 543372 445 Mahella 0 1 2 genus 1 252965 1 species 252966 444 Mahella australiensis 0 360 0 family 1 227387 227388 genus 1 0 360 360 Thermodesulfobium narugense 0 species 1 184064 0 6658 Thermoanaerobacteraceae 1 186814 19 family 7 0 Thermoanaerobacter 4911 1754 189 9 genus 1 Thermoanaerobacter wiegelii 614 0 1 species 46354 Thermoanaerobacter italicus 641 0 1 species 108150 561 Thermoanaerobacter kivui 0 species 1 2325 0 1240 2636821 2 no rank 636 Thermoanaerobacter sp. X513 0 species 1 573062 604 Thermoanaerobacter sp. X514 0 species 1 399726 1 species 496866 558 Thermoanaerobacter pseudethanolicus 0 1 species 29323 558 Thermoanaerobacter brockii 0 0 Thermoanaerobacter mathranii 550 583357 1 species 0 683 42857 no rank 3 1 42837 2 genus 22 0 Ammonifex 252 0 230 Ammonifex degensii 42838 species 1 44260 1 genus 0 431 1 species 1525 Moorella thermoacetica 431 0 0 Carboxydothermus 314 129957 2 genus 10 1 304 Carboxydothermus hydrogenoformans 0 1 species 129958 1 1 genus 2 140458 Thermacetogenium 369 0 0 Thermacetogenium phaeum 368 85874 species 1 2 genus 2 249529 1 374 Caldanaerobacter 0 0 Caldanaerobacter subterraneus 372 911092 1 species 543371 17 13 family 1 0 7645 Thermoanaerobacterales Family III. Incertae Sedis 0 1774 Thermoanaerobacterium 28895 genus 3 1 1 29329 1 species 0 Thermoanaerobacterium xylanolyticum 546 0 Thermoanaerobacterium thermosaccharolyticum 1227 1517 1 species 0 Caldicellulosiruptor 5854 44000 genus 9 33 1 Caldicellulosiruptor lactoaceticus 682 0 1 species 52766 31899 1 species 0 Caldicellulosiruptor bescii 587 0 726 Caldicellulosiruptor kristjanssonii 52765 1 species 413889 1 species 0 Caldicellulosiruptor kronotskyensis 699 species 1 44001 406 Caldicellulosiruptor saccharolyticus 0 species 1 55205 1152 Caldicellulosiruptor owensensis 0 717609 1 species 0 927 Caldicellulosiruptor obsidiansis 413888 1 species 0 Caldicellulosiruptor hydrothermalis 642 Negativicutes 42336 0 1 36 class 31 909932 Veillonellales 20103 0 1 order 11 97 1843489 31977 family 10 350 1 0 20006 Veillonellaceae 29465 3 genus 1 1 0 Veillonella 3320 248315 1 species 0 1308 Veillonella rodentium 1 species 29466 2011 Veillonella parvula 0 1 genus 2 4 909928 2061 Negativicoccus 0 0 2057 Negativicoccus massiliensis 1702287 1 species Dialister 8187 0 1 14 2 genus 39948 8173 Dialister pneumosintes 0 species 1 39950 0 6088 Megasphaera 1 906 1332 genus 2 1 species 907 Megasphaera elsdenii 4756 0 Selenomonadales 13197 0 38 order 14 909929 1 Sporomusaceae 1782 0 1 family 4 3 1843490 0 Pelosinus 1779 365348 genus 3 50 1 0 Pelosinus fermentans 874 365349 1 species 0 855 2629460 no rank 1 855 Pelosinus sp. UFO1 0 1 species 484770 11377 Selenomonadaceae 0 family 9 41 1843491 1 9564 Selenomonas 0 70 genus 6 970 1 69823 1 species 0 1740 Selenomonas sputigena species 1 971 Selenomonas ruminantium 2903 0 4851 0 3 no rank 2637378 species 1 713030 Selenomonas sp. oral taxon 136 1435 0 species 1 712538 Selenomonas sp. oral taxon 478 1572 0 species 1 1884263 Selenomonas sp. oral taxon 920 1844 0 1 2 genus 158846 1 1772 Megamonas 0 0 1771 Megamonas hypermegale 158847 1 species 1 1843488 5 order 70 0 Acidaminococcales 9000 909930 11 family 4 1 0 8930 Acidaminococcaceae 1 904 genus 3 18 0 Acidaminococcus 8919 0 Acidaminococcus intestini 5640 187327 species 1 905 species 1 0 3261 Acidaminococcus fermentans Erysipelotrichia 9274 0 4 class 11 526524 1 0 9270 Erysipelotrichales 526525 order 10 13 1 128827 family 9 57 1 0 Erysipelotrichaceae 9257 1555 Turicibacter 0 2 2 genus 191303 1 no rank 1 2638206 1553 0 Turicibacter sp. H121 1553 0 1 species 1712675 0 Erysipelothrix 1026 1647 3 genus 12 1 Erysipelothrix larvae 503 0 1 species 1514105 511 Erysipelothrix rhusiopathiae 0 species 1 1648 0 1366 Faecalibaculum 1 1729679 genus 2 5 0 1361 Faecalibaculum rodentium 1702221 1 species 0 5253 544447 1 no rank 1834207 1 species 0 5253 Erysipelotrichaceae bacterium I46 84086 1 no rank 0 865 865 endosymbiont 'TC1' of Trimyema compressum 0 1 species 243899 140 clade 1798711 31694 0 0 Cyanobacteria 31694 1117 140 phylum 19 1 1983111 no rank 1 0 360 0 cyanobacterium endosymbiont of Epithemia turgida 360 718217 1 species 1 class 6 6 307596 937 Gloeobacteria 0 Gloeobacterales 931 0 5 order 13 307595 1 1890422 4 family 2 1 0 Gloeobacteraceae 918 33071 3 genus 33 1 0 916 Gloeobacter 1 species 33072 Gloeobacter violaceus 641 0 Gloeobacter kilaueensis 242 0 species 1 1416614 1161 31 order 24 1 0 9182 Nostocales 2681 0 family 8 2661849 0 Calothrix 2681 1 1186 8 genus 4 2619626 6 no rank 0 2051 1 species 2005469 564 Calothrix sp. NIES-4071 0 0 241 Calothrix sp. NIES-3974 2005462 species 1 1 species 1337936 202 Calothrix sp. 336/3 0 520 Calothrix sp. NIES-4101 0 1 species 2005461 1 species 99598 172 Calothrix sp. PCC 7507 0 species 1 1954171 352 Calothrix sp. NIES-2098 0 species 1 32054 626 Calothrix parietina 0 16 family 9 1162 1 5328 Nostocaceae 0 686 0 2 genus 264688 1 species 264691 Trichormus variabilis 389 0 0 Trichormus azollae 297 1164 1 species 0 3303 Nostoc 1177 10 genus 3 1 272131 species 1 0 Nostoc punctiforme 558 1306274 1 species 0 Nostoc flagelliforme 651 7 no rank 2593658 2091 0 276 Nostoc sp. CENA543 0 1 species 1869241 28072 species 1 0 Nostoc sp. PCC 7524 338 0 312 Nostoc sp. PCC 7120 103690 1 species 0 312 Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' 1618022 1 species 0 241 Nostoc sp. 'Peltigera membranacea cyanobiont N6' 1261031 1 species 0 372 Nostoc sp. NIES-3756 1751286 1 species 0 Nostoc sp. PCC 7107 240 317936 species 1 1163 3 genus 0 1330 0 306 Anabaena cylindrica 1165 1 species 0 1024 2619674 no rank 2 657 Anabaena sp. WA102 0 1 species 1647413 0 Anabaena sp. 90 367 46234 1 species 1 1185 2 family 5 0 440 Rivulariaceae 435 0 genus 1 373984 2676603 1 no rank 0 435 373994 1 species 0 Rivularia sp. PCC 7116 435 0 394 Hapalosiphonaceae 1 1892263 1 family 3 1 1190 genus 2 2 0 393 Fischerella no rank 1 494603 391 0 1752063 1 species 0 Fischerella sp. NIES-3754 391 0 315 1219117 1 no rank Nostocales cyanobacterium HT-58-2 315 0 1 species 1940762 0 8726 1301283 41 subclass 0 Oscillatoriales 3776 1 1150 11 order 19 1 4 6 family 1892254 1773 Oscillatoriaceae 0 0 1429 Oscillatoria 1 1158 3 genus 3 0 Oscillatoria acuminata 839 118323 species 1 587 Oscillatoria nigro-viridis 0 1 species 482564 1 1155738 1 2 genus 0 Moorea 340 0 339 Moorea producens 1155739 1 species 1 1892252 4 family 1 0 Microcoleaceae 806 44471 1 genus 0 369 369 0 1 no rank 2642155 Microcoleus sp. PCC 7113 369 0 1 species 1173027 0 Trichodesmium 436 1205 1 2 genus 1 1206 species 1 0 Trichodesmium erythraeum 435 1 1 3 family 1892249 348 Cyanothecaceae 0 11 2 genus 43988 1 347 Cyanothece 0 336 0 no rank 1 2649277 0 336 Cyanothece sp. PCC 7425 395961 1 species 233 Gomontiellaceae 0 1 2 family 1892255 1 241421 1 genus 0 232 241425 species 1 0 Crinalium epipsammum 232 605 Coleofasciculaceae 0 1 family 3 1892251 1 604 Geitlerinema 0 2 genus 1 63132 1 2648775 1 no rank 0 603 0 603 Geitlerinema sp. PCC 7407 1173025 species 1 1 order 22 1 1118 4950 Chroococcales 0 4 family 4 1890449 1 713 Microcystaceae 0 0 709 Microcystis 1 1125 3 genus 1 1 species 1126 488 Microcystis aeruginosa 0 2643300 no rank 1 0 220 220 Microcystis sp. MC19 0 species 1 1967666 6 family 5 1890464 1 1534 Chroococcaceae 0 0 158 268175 genus 1 158 0 1 no rank 2648896 species 1 2005460 Chondrocystis sp. NIES-4102 158 0 102231 genus 1 0 232 232 0 no rank 1 2623012 232 Gloeocapsa sp. PCC 7428 0 species 1 1173026 0 Geminocystis 1139 1 669357 2 3 genus no rank 2 2625037 1137 0 species 1 1615909 Geminocystis sp. NIES-3708 710 0 Geminocystis sp. NIES-3709 427 0 species 1 1617448 2023 0 8 family 1890450 genus 1 263510 294 0 294 0 1 species 2546360 294 Cyanothece sp. ATCC 51142 0 1 strain 43989 genus 2 28070 800 0 0 411 2546359 1 species 1 strain 497965 411 Cyanothece sp. PCC 7822 0 389 0 species 1 2546356 0 389 Cyanothece sp. PCC 7424 65393 strain 1 146 0 no rank 2 92682 1 3 2 genus 76023 146 Halothece 0 2632878 no rank 1 0 143 1 species 65093 Halothece sp. PCC 7418 143 0 0 123 1453359 1 genus 0 123 Candidatus Atelocyanobacterium thalassa 713887 1 species 2 genus 2546365 660 0 0 660 2546366 2 species Cyanothece sp. PCC 8802 342 0 1 strain 395962 0 318 Cyanothece sp. PCC 8801 41431 strain 1 0 Cyanobacteriaceae 679 1890452 3 family 1 1 1 2 genus 1 102234 Cyanobacterium 678 0 677 Cyanobacterium aponinum 0 1 species 379064 0 888 Pleurocapsales 1 52604 23 order 6 0 294 1890500 family 1 294 0 genus 1 44474 species 1 54308 Pleurocapsa minor 294 0 0 Dermocarpellaceae 571 1 1890498 4 family 4 3 genus 1 102115 1 Stanieria 567 0 species 1 102116 174 Stanieria cyanosphaera 0 2642663 1 no rank 0 392 1807358 1 species 0 Stanieria sp. NIES-3757 392 11334 Synechococcales 0 1 94 order 52 1890424 1890438 2 family 6 1 0 1131 Leptolyngbyaceae 1129 Leptolyngbya 0 1 genus 5 2 47251 Leptolyngbya boryana 184 0 species 1 1184 no rank 3 2650499 943 0 0 Leptolyngbya sp. O-77 337 1080068 1 species 1752064 1 species 0 Leptolyngbya sp. NIES-3755 322 111781 1 species 0 Leptolyngbya sp. PCC 7376 284 1 family 1890429 361 0 0 361 155977 genus 1 species 1 155978 Acaryochloris marina 361 0 2303730 1 family 0 136 136 0 genus 1 170610 1 species 1209493 Halomicronema hongdechloris 136 0 7237 Synechococcaceae 0 1 22 family 33 1890426 0 98 146785 1 genus 146786 1 species 0 98 Thermosynechococcus elongatus Dactylococcopsis 121 0 2 genus 3 13034 1 292566 1 species 0 118 Dactylococcopsis salina 1129 genus 26 77 1 0 Synechococcus 5793 23 no rank 2626047 5226 0 0 Synechococcus sp. KORDI-52 239 585425 species 1 1 species 374982 150 Synechococcus sp. PCC 73109 0 113 Synechococcus sp. PCC 6312 0 1 species 195253 166314 1 species 0 305 Synechococcus sp. WH 8109 Synechococcus sp. PCC 7502 399 0 1 species 1173263 0 599 Synechococcus sp. JA-3-3Ab 321327 1 species Synechococcus sp. PCC 7117 80 0 1 species 195498 0 Synechococcus sp. RCC307 276 316278 1 species Synechococcus sp. JA-2-3B'a(2-13) 334 0 species 1 321332 1280380 1 species 0 Synechococcus sp. KORDI-100 114 Synechococcus sp. CC9311 99 0 1 species 64471 0 Synechococcus sp. WH 8103 232 29410 species 1 0 Synechococcus sp. PCC 8807 244 195248 1 species 110662 1 species 0 190 Synechococcus sp. CC9605 1 species 1827144 Synechococcus sp. NIES-970 277 0 1 species 32051 Synechococcus sp. WH 7803 207 0 Synechococcus sp. CC9902 53 0 1 species 316279 206 Synechococcus sp. KORDI-49 0 1 species 585423 84588 species 1 0 242 Synechococcus sp. WH 8102 32049 1 species 0 Synechococcus sp. PCC 7002 125 0 206 Synechococcus sp. SynAce01 1916956 1 species 1 species 1350461 Synechococcus sp. UTEX 2973 263 0 Synechococcus sp. PCC 7003 273 0 1 species 374981 33070 1 species 0 Synechococcus lividus 140 0 Synechococcus elongatus 350 32046 species 1 0 Cyanobium 1203 1 167375 genus 3 11 585 0 no rank 1 2627006 585 Cyanobium sp. NIES-981 0 species 1 1851505 1 species 59930 607 Cyanobium gracile 0 family 4 1890428 513 0 9 genus 4 1142 1 Synechocystis 513 0 504 0 no rank 3 2640012 1148 1 species 0 117 Synechocystis sp. PCC 6803 1 species 2116702 117 Synechocystis sp. IPPAS B-1465 0 0 270 Synechocystis sp. PCC 6714 1147 species 1 4 family 1213 1584 0 1218 genus 4 1 1 0 Prochlorococcus 1584 1186 Prochlorococcus marinus 0 1 species 1219 2627481 no rank 2 0 397 1 species 1501268 132 Prochlorococcus sp. MIT 0604 0 Prochlorococcus sp. MIT 0801 265 0 1 species 1501269 0 278 1890436 family 2 0 278 Pseudanabaena 1152 genus 2 2 1 276 0 1 no rank 2593292 species 1 82654 276 Pseudanabaena sp. PCC 7367 0 248 0 2 order 1890505 1 1 family 2 1890528 Chroococcidiopsidaceae 248 0 247 0 1 genus 54298 0 Chroococcidiopsis thermalis 247 54299 species 1 no rank 1 1859062 160 0 160 0 genus 1 262406 166501 1 species 0 160 Thermobaculum terrenum 7628 0 phylum 44 200795 class 7 292625 1493 0 Anaerolineales 1493 0 8 7 order 292629 1 0 1485 Anaerolineaceae 1 292628 8 family 6 1 233189 2 genus 1 0 Anaerolinea 557 1 species 167964 556 Anaerolinea thermophila 0 0 788 1324991 1 no rank species 1 1889813 Anaerolineaceae bacterium oral taxon 439 788 0 132 Brevefilum 0 2 genus 1 2019482 1 131 Brevefilum fermentans 0 1 species 1986204 830 Ardenticatenia 0 1 20 5 class 1382928 18 4 order 1382929 1 Ardenticatenales 810 0 6 3 family 1382930 1 Ardenticatenaceae 792 0 0 786 Candidatus Promineofilum 1988031 10 genus 2 1 Candidatus Promineofilum breve 776 0 species 1 1806508 189775 4 class 7 1 0 Thermomicrobia 824 1 189776 order 2 10 0 Thermomicrobiales 267 257 0 1 family 189777 0 257 499 genus 1 1 species 500 Thermomicrobium roseum 257 0 subclass 4 85000 553 0 1 8 4 order 85001 553 Sphaerobacterales 0 3 suborder 255728 545 0 family 3 1 85002 1 545 Sphaerobacteraceae 0 7 2 genus 2056 1 Sphaerobacter 544 0 0 537 Sphaerobacter thermophilus 2057 1 species 1 class 11 2 32061 2079 Chloroflexia 0 0 Chloroflexales 2077 1 32064 10 order 9 0 972 1508595 suborder 4 972 Roseiflexaceae 0 2 family 4 1508635 1 970 Roseiflexus 0 1 3 genus 120961 1 2609473 1 no rank 0 436 0 436 Roseiflexus sp. RS-1 357808 1 species 1 species 120962 533 Roseiflexus castenholzii 0 1508594 5 suborder 0 1096 5 family 2 1106 1 1096 Chloroflexaceae 0 1 genus 4 1107 1 1094 Chloroflexus 0 1 species 152260 Chloroflexus aggregans 245 0 424 2 species 1108 1 Chloroflexus aurantiacus 848 0 1 strain 480224 Chloroflexus sp. Y-400-fl 424 0 1 301297 class 9 3 0 Dehalococcoidia 1826 491 Dehalogenimonas 0 1 3 genus 1 670486 0 Dehalogenimonas lykanthroporepellens 270 552810 species 1 0 220 Dehalogenimonas formicexedens 1839801 1 species 0 1332 Dehalococcoidales 1 1202465 1 order 5 0 Dehalococcoidaceae 1331 1 1202464 1 4 family 1 3 genus 1 61434 Dehalococcoides 1330 0 210 0 no rank 1 237581 0 Dehalococcoides sp. UCH007 210 1522671 1 species 0 1119 Dehalococcoides mccartyi 61435 species 1 475962 class 5 13 1 0 576 Caldilineae 1 475963 4 order 2 0 563 Caldilineales 1 3 family 3 475964 561 Caldilineaceae 0 0 558 Caldilinea 1 233191 genus 2 6 0 552 Caldilinea aerophila 133453 species 1 1 201174 635 phylum 20 0 392136 Actinobacteria 1752188 4 no rank 0 592 0 Actinobacteria bacterium IMCC19121 127 1848754 1 species Actinobacteria bacterium IMCC26103 176 0 1 species 1848756 0 143 Actinobacteria bacterium IMCC25003 1848255 species 1 0 146 Actinobacteria bacterium IMCC26077 1848755 1 species 1 1186 class 582 1760 Actinobacteria 330882 0 Corynebacteriales 52472 0 331 order 161 85007 1 66 family 52 1653 1 Corynebacteriaceae 15605 0 Corynebacterium 15539 0 1 463 51 genus 1716 460 Corynebacterium humireducens 0 1 species 1223514 1 species 161899 Corynebacterium singulare 338 0 Corynebacterium urealyticum 290 0 1 species 43771 1 species 38305 578 Corynebacterium vitaeruminis 0 species 1 258224 Corynebacterium resistens 442 0 1 species 89154 273 Corynebacterium terpenotabidum 0 164 [Brevibacterium] flavum 0 1 species 92706 0 Corynebacterium uterequi 224 1072256 species 1 Corynebacterium pseudotuberculosis 249 0 1 species 1719 1 species 1050174 Corynebacterium epidermidicanis 357 0 324 Corynebacterium sphenisci 0 1 species 191493 65058 1 species 0 Corynebacterium ulcerans 385 38289 species 1 0 Corynebacterium jeikeium 677 0 640 Corynebacterium striatum 43770 1 species 351 Corynebacterium variabile 0 1 species 1727 0 Corynebacterium crudilactis 160 1652495 species 1 152794 1 species 0 227 Corynebacterium efficiens species 1 161896 220 Corynebacterium camporealensis 0 Corynebacterium diphtheriae 255 0 1 species 1717 1 species 1404244 186 Corynebacterium glyciniphilum 0 0 Corynebacterium deserti 198 1408191 1 species 0 353 Corynebacterium cystitidis 35757 1 species 401472 species 1 0 Corynebacterium ureicelerivorans 303 Corynebacterium imitans 309 0 1 species 156978 0 284 Corynebacterium casei 160386 1 species 261 Corynebacterium maris 0 1 species 575200 108486 1 species 0 Corynebacterium falsenii 570 0 281 Corynebacterium marinum 349751 1 species 1 species 571915 Corynebacterium mustelae 102 0 458 Corynebacterium frankenforstense 0 1 species 1230998 1 species 1121358 363 Corynebacterium doosanense 0 203263 1 species 0 309 Corynebacterium aquilae Corynebacterium lactis 269 0 1 species 1231000 169292 1 species 0 305 Corynebacterium aurimucosum 0 Corynebacterium ammoniagenes 155 1697 1 species 2624378 2 no rank 0 470 261 Corynebacterium sp. NML98-0116 0 1 species 702967 Corynebacterium sp. ATCC 6931 209 0 1 species 1487956 510 Corynebacterium halotolerans 0 species 1 225326 136857 1 species 0 227 Corynebacterium testudinoris species 1 1718 Corynebacterium glutamicum 462 0 1705 1 species 0 Corynebacterium stationis 234 0 206 Corynebacterium atypicum 191610 1 species 28028 1 species 0 234 Corynebacterium flavescens Corynebacterium glaucum 227 0 species 1 187491 0 Corynebacterium kutscheri 106 35755 1 species 161879 1 species 0 172 Corynebacterium kroppenstedtii 1 species 42817 158 Corynebacterium argentoratense 0 294 Corynebacterium simulans 0 1 species 146827 161895 1 species 0 Corynebacterium phocae 155 Corynebacterium callunae 301 0 1 species 1721 family 3 6 316606 1 220 Segniliparaceae 0 0 214 Segniliparus 286801 genus 2 5 1 209 Segniliparus rotundus 0 1 species 286802 0 846 85028 3 family 2060 3 3 genus 1 0 Tsukamurella 846 2061 1 species 0 311 Tsukamurella paurometabola 1 species 57704 Tsukamurella tyrosinosolvens 532 0 2494 Gordoniaceae 0 9 family 23 85026 1 2471 Gordonia 0 50 8 genus 2053 1 species 1 2054 325 Gordonia bronchialis 0 2657482 2 no rank 0 781 1 species 337191 304 Gordonia sp. KTR9 0 2059875 species 1 0 477 Gordonia sp. YC-JH1 1 species 84595 322 Gordonia polyisoprenivorans 0 0 401 Gordonia terrae 2055 1 species 1136941 1 species 0 285 Gordonia phthalatica 1 species 1004901 Gordonia iterans 307 0 1 85025 31 family 48 0 13681 Nocardiaceae 1 291 23 genus 1827 Rhodococcus 8820 0 1 species 1830 Rhodococcus ruber 390 0 1 species 1833 Rhodococcus erythropolis 401 0 1 species 43767 Rhodococcus hoagii 489 0 0 Rhodococcus fascians 320 1828 1 species 0 210 Rhodococcus qingshengii 334542 1 species 1 species 37919 1043 Rhodococcus opacus 0 0 411 Rhodococcus rhodochrous 1829 1 species 103816 1 species 0 411 Rhodococcus pyridinivorans 1 species 132919 Rhodococcus jostii 470 0 0 Rhodococcus aetherivorans 510 191292 1 species 12 no rank 192944 3874 0 0 Rhodococcus sp. MTM3W5.2 527 1805827 species 1 1 species 1727214 379 Rhodococcus sp. H-CA8f 0 0 Rhodococcus sp. p52 466 935199 1 species 257 Rhodococcus sp. WMMA185 0 1 species 679318 1723645 1 species 0 Rhodococcus sp. 008 212 171 Rhodococcus sp. PBTS 1 0 1 species 1653478 Rhodococcus sp. PBTS 2 249 0 1 species 1653479 243 Rhodococcus sp. YL-1 0 1 species 1045808 0 501 Rhodococcus sp. WB1 1033922 1 species 1564114 1 species 0 287 Rhodococcus sp. B7740 1 species 1807790 176 Rhodococcus sp. BH4 0 1 species 1570939 Rhodococcus sp. 2G 406 0 0 Nocardia 4813 1817 92 7 genus 1 37332 1 species 0 583 Nocardia seriolae 135487 1 species 0 1080 Nocardia cyriacigeorgica 0 1118 Nocardia brasiliensis 37326 1 species 412 Nocardia nova 0 1 species 37330 0 782 Nocardia terpenica 455432 1 species 0 Nocardia farcinica 746 37329 1 species 0 132 697024 2 no rank 12 2 genus 1847725 1 132 Lawsonella 0 1528099 species 1 0 120 Lawsonella clevelandensis 18634 Mycobacteriaceae 0 64 family 56 1762 1 5 genus 670516 1655 0 Mycobacterium abscessus 790 0 1 species 36809 species 1 1578165 291 Mycobacterium saopaulense 0 0 Mycobacterium stephanolepidis 220 1520670 1 species 153 Mycobacterium immunogenum 0 1 species 83262 0 201 Mycobacterium chelonae 1774 1 species 10499 Mycobacterium 0 1 790 34 genus 1763 Mycobacterium liflandii 186 0 1 species 261524 305 0 species group 1 2249310 0 Mycobacterium shigaense 305 722731 1 species 1768 1 species 0 391 Mycobacterium kansasii species group 4 77643 889 0 78331 1 species 0 213 Mycobacterium canettii 1 species 3 244 1773 Mycobacterium tuberculosis 676 0 Mycobacterium bovis 221 0 1 biotype 1765 biotype 1 33894 211 Mycobacterium africanum 0 species 1 1769 Mycobacterium leprae 69 0 0 Mycobacterium marinum 368 1781 1 species 0 4282 2642494 no rank 13 575 Mycobacterium sp. JS623 0 1 species 212767 0 Mycobacterium sp. QIA-37 248 1561223 species 1 0 Mycobacterium sp. djl-10 606 1879023 1 species 1 species 1920667 Mycobacterium sp. WY10 280 0 1 species 1545728 Mycobacterium sp. EPa45 499 0 1 species 164757 Mycobacterium sp. JLS 237 0 1 species 1168287 88 Mycobacterium sp. MOTT36Y 0 1 species 164756 Mycobacterium sp. MCS 212 0 189918 1 species 0 219 Mycobacterium sp. KMS 0 296 Mycobacterium sp. NRRL B-3805 1570328 1 species 0 Mycobacterium sp. PYR15 359 2051552 species 1 428 Mycobacterium sp. YC-RL4 0 1 species 1682113 1273687 1 species 0 Mycobacterium sp. VKM Ac-1817D 235 1 species 29311 Mycobacterium haemophilum 167 0 0 Mycobacterium ulcerans 230 1809 1 species 120793 8 species group 0 2386 0 399 Mycobacterium colombiense 339268 1 species 1 species 701042 431 Mycobacterium marseillense 0 1764 1 species 0 745 Mycobacterium avium 0 691 Mycobacterium intracellulare 1 1767 4 species 174 0 Mycobacterium indicus pranii 104 35617 subspecies 1 subspecies 1 222805 296 Mycobacterium chimaera 0 Mycobacterium yongonense 117 0 subspecies 1 1203599 1138383 species 1 0 Mycobacterium paraintracellulare 120 436 Mycobacterium dioxanotrophicus 0 1 species 482462 603 0 2 genus 1073531 0 Mycobacterium terrae 304 1788 species 1 0 299 Mycobacterium sinense 875328 species 1 255 0 genus 1 697025 Hoyosella subflava 255 0 species 1 639313 5558 0 genus 13 1866885 0 Mycobacterium neoaurum 296 1795 1 species 0 Mycobacterium thermoresistibile 315 1797 1 species 0 408 Mycobacterium rhodesiae 36814 1 species Mycobacterium litorale 406 0 1 species 758802 1 species 1766 264 Mycobacterium fortuitum 0 Mycobacterium smegmatis 433 0 1 species 1772 species 1 1810 431 Mycobacterium vaccae 0 0 Mycobacterium gilvum 458 1804 1 species species 1 1800 Mycobacterium chubuense 304 0 110539 1 species 0 Mycobacterium vanbaalenii 476 0 603 Mycobacterium goodii 134601 1 species 0 692 Mycobacterium phlei 1771 species 1 0 472 Mycobacterium aurum 1791 1 species 0 Dietziaceae 529 1 85029 1 4 family 1 37914 24 3 genus 0 528 Dietzia 330 0 1 no rank 2617939 0 Dietzia sp. oral taxon 368 330 712270 1 species 0 Dietzia timorensis 174 499555 1 species 1 85011 order 82 78 0 Streptomycetales 49822 1 2062 434 81 family 0 Streptomycetaceae 49744 Streptomyces 46617 0 1400 75 genus 1883 1 0 713 Streptomyces bingchenggensis 379067 1 species 2049881 1 species 0 Streptomyces sp. XZHG99 483 1 species 68214 Streptomyces griseochromogenes 693 0 1 species 193462 Streptomyces niveus 465 0 1616117 species 1 0 Streptomyces formicae 475 species 1 68202 Streptomyces fulvissimus 396 0 Streptomyces lincolnensis 708 0 1 species 1915 1901 1 species 0 494 Streptomyces clavuligerus 1926 1 species 0 Streptomyces reticuli 726 0 436 Streptomyces pluripotens 1355015 species 1 0 Streptomyces glaucescens 457 1907 species 1 0 12832 2593676 24 no rank species 1 1812480 Streptomyces sp. fd1-xmd 495 0 0 477 Streptomyces sp. 4F 1751294 1 species 1 species 1495638 Streptomyces sp. M56 719 0 483 Streptomyces sp. MOE7 0 1 species 1961713 0 Streptomyces sp. CCM_MD2014 640 1561022 species 1 1 species 234612 Streptomyces sp. TN58 493 0 444103 1 species 0 474 Streptomyces sp. CNQ-509 1 species 1262452 805 Streptomyces sp. 769 0 species 1 1984801 Streptomyces sp. CLI2509 651 0 1 species 2059884 698 Streptomyces sp. CMB-StM0423 0 Streptomyces sp. PAMC 26508 412 0 species 1 1265601 1661694 species 1 0 Streptomyces sp. Tue 6075 422 1837283 species 1 0 Streptomyces sp. S8 358 1 species 2094021 414 Streptomyces sp. WAC00288 0 1 species 1841249 Streptomyces sp. RTd22 579 0 412 Streptomyces sp. SirexAA-E 0 1 species 862751 206662 1 species 0 541 Streptomyces sp. FR-008 1 species 1972846 Streptomyces sp. Sge12 438 0 517 Streptomyces sp. CFMR 7 0 species 1 1649184 species 1 1725411 Streptomyces sp. CdTB01 608 0 0 502 Streptomyces sp. SAT1 1849967 1 species Streptomyces sp. P3 766 0 1 species 2135430 0 Streptomyces sp. 3211 523 1964449 1 species 465541 1 species 0 Streptomyces sp. Mg1 405 33903 species 1 0 537 Streptomyces avermitilis 29303 species 1 0 Streptomyces cattleya 924 1437453 1 species 0 641 Streptomyces leeuwenhoekii Streptomyces albireticuli 482 0 1 species 1940 68249 1 species 0 1180 Streptomyces pactum 1 species 164348 756 Streptomyces puniciscabiei 0 1 species 75293 576 Streptomyces autolyticus 0 146923 1 species 0 418 Streptomyces parvulus Streptomyces alfalfae 580 0 1 species 1642299 0 1103 Streptomyces venezuelae 54571 1 species 0 456 Streptomyces lavendulae 1914 species 1 1 species 1783515 543 Streptomyces sp. S10(2016) 0 1 species 68192 588 Streptomyces cyaneogriseus 0 754 Streptomyces scabiei 0 1 species 1930 2 species group 1477431 1109 0 1 species 42239 Streptomyces sampsonii 636 0 Streptomyces coelicolor 473 0 1 species 1902 0 Streptomyces violaceusniger 809 68280 species 1 38300 1 species 0 568 Streptomyces pristinaespiralis species 1 1916 Streptomyces lividans 544 0 Streptomyces xinghaiensis 463 0 1 species 1038928 1912 1 species 0 1616 Streptomyces hygroscopicus Streptomyces gilvosporeus 588 0 1 species 553510 1073 Streptomyces albus 0 species 1 1888 1169025 1 species 0 Streptomyces pratensis 374 0 Streptomyces violaceoruber 547 1935 1 species 1 species 1889 Streptomyces ambofaciens 702 0 1 species 92644 616 Streptomyces malaysiensis 0 629295 2 species group 0 960 1482558 species subgroup 1 0 501 1908 species 1 0 Streptomyces globisporus 501 459 0 1 species subgroup 1482596 1 species 1911 459 Streptomyces griseus 0 0 691 Streptomyces alboflavus 67267 1 species 0 617 Streptomyces albulus 68570 1 species 0 Streptomyces chartreusis 621 1969 1 species 408015 1 species 0 Streptomyces xiamenensis 559 0 645 Streptomyces vietnamensis 362257 1 species Streptomyces lydicus 1488 0 1 species 47763 285473 1 species 0 481 Streptomyces rubrolavendulae 1 species 42684 Streptomyces collinus 669 0 1 species 1971 Streptomyces noursei 618 0 Streptomyces peucetius 443 0 1 species 1950 0 Kitasatospora 2693 1 2063 45 5 genus 1 species 68173 475 Kitasatospora albolonga 0 2066 1 species 0 688 Kitasatospora setae 2633591 no rank 1 0 964 0 Kitasatospora sp. MMS16-BH015 964 2018025 species 1 521 Kitasatospora aureofaciens 0 1 species 1894 1 33 order 32 85009 9745 Propionibacteriales 0 Nocardioidaceae 3129 0 63 family 13 85015 1 Kribbella 505 0 1 genus 2 2 182639 species 1 182640 503 Kribbella flavida 0 2 genus 6 2040 1 326 Aeromicrobium 0 Aeromicrobium erythreum 320 0 species 1 2041 1 116071 15 genus 2 0 511 Micropruina 75385 1 species 0 Micropruina glycogenica 496 4 genus 44 1839 1 Nocardioides 1198 0 1 species 450734 405 Nocardioides dokdonensis 0 381 0 no rank 1 2615069 Nocardioides sp. JS614 381 0 species 1 196162 2045452 1 species 0 368 Nocardioides sp. 78 0 Pimelobacter 526 2044 2 genus 7 1 0 519 Pimelobacter simplex 2045 1 species 0 Propionibacteriaceae 6584 31957 102 family 19 1 1 genus 203133 666 0 666 0 1 no rank 2633994 1 species 1871034 Propionimicrobium sp. Marseille-P3275 666 0 1912215 3 2 genus 1 0 Acidipropionibacterium 778 Acidipropionibacterium acidipropionici 775 0 1 species 1748 1 1912216 6 4 genus 0 Cutibacterium 1133 0 246 Cutibacterium granulosum 33011 1 species 1 species 1747 408 Cutibacterium acnes 0 473 Cutibacterium avidum 0 1 species 33010 498 Microlunatus 0 3 2 genus 29404 1 29405 1 species 0 495 Microlunatus phosphovorus 1 3 genus 20 1743 844 Propionibacterium 0 2608905 no rank 1 0 101 671223 1 species 0 Propionibacterium sp. oral taxon 193 101 1 species 1744 723 Propionibacterium freudenreichii 0 16 5 genus 72763 1 2240 Tessaracoccus 0 1 species 1332264 Tessaracoccus aquimaris 737 0 0 636 2635419 1 no rank 1909732 1 species 0 Tessaracoccus sp. T2.5-30 636 1610493 1 species 0 416 Tessaracoccus flavus Tessaracoccus flavescens 435 0 1 species 399497 0 323 2801844 genus 1 0 Pseudopropionibacterium propionicum 323 1750 1 species 34510 Micrococcales 0 1 order 140 303 85006 0 320 125316 2 family 1 84756 2 genus 4 0 Beutenbergia 320 0 316 Beutenbergia cavernae 84757 1 species 0 Dermacoccaceae 1017 145357 6 family 11 1 genus 1 745364 318 0 1 species 571913 318 Luteipulveratus mongoliensis 0 57499 genus 2 6 1 0 272 Kytococcus Kytococcus sedentarius 266 0 1 species 1276 0 Dermacoccus 416 1 57495 1 genus 2 415 Dermacoccus nishinomiyaensis 0 1 species 1274 1 85021 family 9 10 0 Intrasporangiaceae 1394 6 2 genus 53357 1 Intrasporangium 226 0 53358 1 species 0 Intrasporangium calvum 220 2 genus 2 267408 1 Arsenicicoccus 436 0 0 434 2663846 1 no rank Arsenicicoccus sp. oral taxon 190 434 0 1 species 1658671 0 Serinicoccus 471 265976 21 genus 2 1 450 Serinicoccus sp. JLT9 0 1 species 1758689 53457 10 2 genus 1 0 Janibacter 251 1 species 857417 241 Janibacter indicus 0 Brevibacteriaceae 549 0 1 family 3 2 85019 1 2 genus 1 1696 547 Brevibacterium 0 0 546 Brevibacterium linens 1703 1 species 1 17 11 family 85020 2697 Dermabacteraceae 0 1 44 6 genus 43668 Brachybacterium 2082 0 1 species 1331682 349 Brachybacterium ginsengisoli 0 1 species 2017485 Brachybacterium sp. VR2415 517 0 0 Brachybacterium sp. VM2412 472 2017484 species 1 43669 species 1 0 357 Brachybacterium faecium 2623841 no rank 1 0 343 1903186 species 1 0 343 Brachybacterium sp. P6-10-X1 1 genus 2 472568 1 191 Devriesea 0 Devriesea agamarum 190 0 species 1 472569 1 2 genus 1 36739 Dermabacter 407 0 406 Dermabacter vaginalis 0 1 species 1630135 0 126 85022 family 2 0 Jonesia 126 1 43673 genus 2 1 43674 1 species 0 125 Jonesia denitrificans 0 332 Sanguibacteraceae 145360 1 3 family 1 2 genus 1 60919 1 331 Sanguibacter 0 1 species 60920 330 Sanguibacter keddieii 0 85023 46 family 155 1 0 11792 Microbacteriaceae 6 2 genus 110932 1 750 Leifsonia 0 0 Leifsonia xyli 744 1575 1 species 435 Frondihabitans 0 1 1 2 genus 447237 434 0 no rank 1 2626248 434 Frondihabitans sp. PAMC 28766 0 1 species 1795630 1 genus 1434032 81 0 81 Pontimonas salivibrio 0 1 species 1159327 340 Rathayibacter 0 1 3 3 genus 33886 Rathayibacter tritici 205 0 1 species 33888 1 species 145458 Rathayibacter toxicus 132 0 0 4180 Microbacterium 33882 genus 14 37 1 0 228 Microbacterium testaceum 2033 1 species 1 species 300019 Microbacterium paludicola 265 0 0 381 Microbacterium aurum 36805 species 1 2609290 no rank 8 0 2711 0 Microbacterium sp. XT11 395 367477 1 species 1696072 1 species 0 242 Microbacterium sp. CGR1 1714373 species 1 0 362 Microbacterium sp. No. 7 250 Microbacterium sp. TPU 3598 0 1 species 1938334 0 Microbacterium sp. str. 'China' 311 2103230 species 1 1916917 1 species 0 324 Microbacterium sp. 1.5R Microbacterium sp. BH-3-3-3 383 0 1 species 1906742 1795053 1 species 0 444 Microbacterium sp. PAMC 28756 1 species 84292 195 Microbacterium chocolatum 0 0 363 Microbacterium hominis 162426 1 species genus 1 518733 355 0 355 Microterricola viridarii 0 1 species 412690 1 genus 2 2 1705353 Aurantimicrobium 77 0 0 Aurantimicrobium minutum 75 708131 1 species 2 genus 2 337004 1 Microcella 330 0 279828 1 species 0 Microcella alkaliphila 328 938 Cryobacterium 0 1 6 3 genus 69578 670052 1 species 0 Cryobacterium arcticum 428 1 no rank 2649013 504 0 0 Cryobacterium sp. LW097 504 1978566 species 1 333 0 genus 1 1759331 333 Cnuibacter physcomitrellae 0 1 species 1619308 6 genus 66 1573 1 Clavibacter 1317 0 290 species 5 28447 1 Clavibacter michiganensis 1251 0 1 subspecies 1874630 209 Clavibacter capsici 0 247 Clavibacter sepedonicus 0 1 subspecies 31964 Clavibacter insidiosus 231 0 1 subspecies 33014 31963 1 subspecies 0 Clavibacter nebraskensis 274 0 477 1655488 3 no rank 0 477 1655489 clade 3 1 529883 genus 3 2 0 477 Rhodoluna 529884 1 species 0 107 Rhodoluna lacicola 0 Candidatus Rhodoluna planktonica 368 535712 species 1 1 4 genus 19 2034 1401 Curtobacterium 0 0 311 Curtobacterium pusillum 69373 1 species no rank 2 257496 1071 0 0 356 Curtobacterium sp. MR_MD2014 1561023 species 1 1 species 1905847 Curtobacterium sp. BH-2-1-1 715 0 genus 1 33877 623 0 1 species 453304 Agromyces aureus 623 0 0 2082 Promicromonosporaceae 85017 76 9 family 1 26 genus 3 254250 1 704 Isoptericola 0 Isoptericola variabilis 428 0 1 species 139208 species 1 372663 250 Isoptericola dokdonensis 0 0 Xylanimonas 542 186188 1 2 genus 1 species 1 186189 Xylanimonas cellulosilytica 541 0 157920 3 genus 1 1 0 Cellulosimicrobium 760 0 286 2624466 1 no rank 1980001 1 species 0 Cellulosimicrobium sp. TH-20 286 species 1 1710 473 Cellulosimicrobium cellulans 0 1 family 3 85018 1 147 Dermatophilaceae 0 146 Dermatophilus 0 2 2 genus 1862 1 1 species 1863 144 Dermatophilus congolensis 0 0 Micrococcaceae 12345 1268 407 38 family 1 1742992 1 genus 0 347 43663 1 species 0 347 Paenarthrobacter aurescens 1 1742993 13 genus 4 0 Pseudarthrobacter 1207 0 Pseudarthrobacter sulfonivorans 375 121292 1 species 0 442 Pseudarthrobacter chlorophenolicus 85085 1 species 377 Pseudarthrobacter phenanthrenivorans 0 1 species 361575 596707 genus 2 2 1 0 Sinomonas 492 37927 1 species 0 490 Sinomonas atrocyanea 1 57493 5 4 genus 0 1125 Kocuria Kocuria flava 449 0 1 species 446860 72000 species 1 0 Kocuria rhizophila 409 0 Kocuria palustris 262 71999 species 1 2078575 1 genus 0 207 0 207 Arthrobacter sp. IHBB 11108 1618207 species 1 0 Rothia 909 32207 3 genus 2 1 Rothia mucilaginosa 672 0 species 1 43675 2047 species 1 0 Rothia dentocariosa 235 Micrococcus 376 0 2 genus 1 1269 1 0 375 Micrococcus luteus 1270 1 species 1645 genus 1 0 179 species 1 1646 Renibacterium salmoninarum 179 0 1 1868332 10 genus 2 0 Neomicrococcus 306 0 296 Neomicrococcus aestuarii 556325 1 species Arthrobacter 6070 0 98 15 genus 1663 1 625 Arthrobacter alpinus 0 1 species 656366 no rank 12 235627 4802 0 456 Arthrobacter sp. LS16 0 species 1 1690248 species 1 2079227 Arthrobacter sp. PGP41 305 0 0 Arthrobacter sp. ERGS1:01 414 1704044 1 species 290399 1 species 0 549 Arthrobacter sp. FB24 0 348 Arthrobacter sp. PAMC 25486 1494608 1 species 1652545 1 species 0 370 Arthrobacter sp. YC-RL1 0 Arthrobacter sp. YN 503 2020486 1 species 1 species 1357915 Arthrobacter sp. QXT-31 492 0 1771959 1 species 0 Arthrobacter sp. ATCC 21022 395 1 species 1118963 Arthrobacter sp. Rue61a 295 0 386 Arthrobacter sp. U41 0 1 species 1849032 1 species 1806905 289 Arthrobacter sp. ZXY-2 0 37928 species 1 0 Arthrobacter crystallopoietes 545 0 Glutamicibacter 720 1742989 genus 2 3 1 Glutamicibacter arilaitensis 717 0 species 1 256701 188 0 no rank 1 577468 genus 1 2038 188 0 Tropheryma whipplei 188 0 1 species 2039 1218 Cellulomonadaceae 0 8 6 family 85016 1 Cellulomonas 1210 0 1 genus 5 19 1707 species 1 11 Cellulomonas gilvus 254 0 Cellulomonas fimi 336 0 1 species 1708 220 0 no rank 1 2620175 0 Cellulomonas sp. PSBB021 220 2003551 1 species Cellulomonas flavigena 381 0 1 species 1711 1 25 order 51 85004 Bifidobacteriales 138418 0 1 31953 family 24 1803 0 Bifidobacteriaceae 138367 189 0 1 genus 196081 1 species 78259 Scardovia inopinata 189 0 Parascardovia 449 0 genus 2 2 196082 1 Parascardovia denticolens 447 0 1 species 78258 135512 Bifidobacterium 0 genus 19 1520 1678 1 1689 1 species 0 Bifidobacterium dentium 1082 1680 1 species 0 45403 Bifidobacterium adolescentis 3527 2 species 1686 1 11863 Bifidobacterium catenulatum 0 1 subspecies 630129 8336 Bifidobacterium kashiwanohense 0 0 23372 Bifidobacterium longum 216816 1 species 0 Bifidobacterium angulatum 1346 1683 species 1 0 654 Bifidobacterium choerinum 35760 1 species 28026 species 1 0 Bifidobacterium pseudocatenulatum 31891 0 669 Bifidobacterium thermophilum 33905 1 species 8516 Bifidobacterium breve 0 1 species 1685 1684 species 1 0 Bifidobacterium asteroides 391 28025 1 species 0 Bifidobacterium animalis 506 0 990 Bifidobacterium scardovii 158787 1 species 0 Bifidobacterium indicum 298 1691 1 species Bifidobacterium actinocoloniiforme 230 0 1 species 638619 5513 Bifidobacterium bifidum 0 1 species 1681 239 Bifidobacterium coryneforme 0 species 1 1687 0 1029 Bifidobacterium pseudolongum 1694 species 1 414 0 1 genus 2701 414 Gardnerella vaginalis 0 1 species 2702 1643818 2 no rank 0 317 0 Thermobispora 317 147067 genus 2 2 1 Thermobispora bispora 315 0 1 species 2006 586 Glycomycetales 0 1 1 4 order 85014 0 Glycomycetaceae 585 1 85034 3 family 5 1 283810 2 genus 15 0 580 Stackebrandtia 1 species 283811 565 Stackebrandtia nassauensis 0 Candidatus Nanopelagicales 1011 0 1 12 order 2 2039638 11 family 2162846 1009 0 0 136 Candidatus Nanopelagicus 1 2039639 1 genus 4 0 Candidatus Nanopelagicus abundans 38 1884916 1 species species 1 1884634 Candidatus Nanopelagicus limnes 39 0 1 species 1884915 58 Candidatus Nanopelagicus hibericus 0 1 genus 7 2 622681 873 Candidatus Planktophila 0 1 species 1884914 Candidatus Planktophila dulcis 246 0 0 144 Candidatus Planktophila lacus 1884913 1 species 194 Candidatus Planktophila versatilis 0 1 species 1884905 Candidatus Planktophila limnetica 79 0 1 species 573600 0 Candidatus Planktophila sulfonica 100 1884904 1 species 1884907 1 species 0 108 Candidatus Planktophila vernalis 153 0 no rank 1 52018 1650658 species 1 0 Actinobacteria bacterium IMCC26256 153 471 0 2 order 1643684 0 471 Nakamurellaceae 1 85031 1 2 family 470 0 genus 1 53460 0 470 Nakamurella multipartita 53461 1 species 0 17383 Pseudonocardiales 85010 66 40 order 1 2070 205 family 39 1 0 Pseudonocardiaceae 17317 1851 genus 1 0 262 Saccharomonospora viridis 262 0 species 1 1852 719 Saccharopolyspora 0 1 2 genus 3 1835 Saccharopolyspora erythraea 716 0 1 species 1836 0 631 Saccharothrix 1 2071 2 2 genus 629 Saccharothrix espanaensis 0 1 species 103731 2994 Pseudonocardia 0 1 8 genus 66 1847 1 species 240495 587 Pseudonocardia dioxanivorans 0 2341 0 6 no rank 2619320 445576 1 species 0 Pseudonocardia sp. AL041005-10 416 1096856 1 species 0 398 Pseudonocardia sp. EC080619-01 0 398 Pseudonocardia sp. EC080610-09 1688404 1 species 1641402 1 species 0 Pseudonocardia sp. HH130629-09 419 1096868 1 species 0 346 Pseudonocardia sp. EC080625-04 Pseudonocardia sp. HH130630-07 364 0 1 species 1690815 1 165301 genus 2 1 0 Lentzea 708 0 707 Lentzea guizhouensis 1586287 species 1 40566 3 genus 28 1 0 Actinosynnema 1807 0 922 Actinosynnema mirum 40567 1 species 0 Actinosynnema pretiosum 857 42197 species 1 Alloactinosynnema 525 0 1 3 2 genus 674734 522 0 no rank 1 2636053 species 1 1653480 522 Alloactinosynnema sp. L-07 0 0 4513 Amycolatopsis 1813 72 7 genus 1 0 Amycolatopsis mediterranei 832 33910 1 species 31958 1 species 0 1196 Amycolatopsis orientalis 0 1342 2618356 2 no rank Amycolatopsis sp. AA4 751 0 1 species 1896961 species 1 1911175 591 Amycolatopsis sp. BJA-103 0 1 species 1814 518 Amycolatopsis methanolica 0 species 1 208439 Amycolatopsis japonica 553 0 976 Kutzneria 0 1 2 genus 1 43356 1 species 43357 975 Kutzneria albida 0 36 6 genus 65496 1 2857 Actinoalloteichus 0 574 Actinoalloteichus sp. ADI127-7 0 1 species 1612552 1 species 340345 433 Actinoalloteichus hymeniacidonis 0 1 species 1470176 Actinoalloteichus hoggarensis 671 0 2 no rank 2644606 1143 0 1612551 1 species 0 600 Actinoalloteichus sp. GBA129-24 543 Actinoalloteichus sp. AHMU CJ021 0 1 species 2072503 1 2 genus 142577 1 Prauserella 355 0 530584 1 species 0 Prauserella marina 354 765 0 genus 1 2029 0 Kibdelosporangium phytohabitans 765 860235 species 1 1 order 4 4 414714 Catenulisporales 958 0 0 Catenulisporaceae 954 1 414877 6 3 family 17 genus 2 414878 1 948 Catenulispora 0 304895 1 species 0 Catenulispora acidiphila 931 4 order 19 2037 1 6206 Actinomycetales 0 6202 Actinomycetaceae 0 1 721 18 family 2049 0 952 Mobiluncus 1 2050 2 genus 18 1 species 2051 934 Mobiluncus curtisii 0 349 0 1 genus 2529408 Actinomyces meyeri 349 0 1 species 52773 0 283 Arcanobacterium 28263 19 genus 2 1 0 Arcanobacterium haemolyticum 264 28264 1 species 0 534 1069494 genus 1 1661 1 species 0 534 Trueperella pyogenes Actinotignum 215 0 1 2 genus 1653174 1 1 species 59505 Actinotignum schaalii 214 0 Actinomyces 3148 0 1 9 genus 81 1654 287 Actinomyces gaoshouyii 0 1 species 1960083 544580 1 species 0 Actinomyces oris 498 1852377 1 species 0 Actinomyces pacaensis 557 species 1 1912795 Actinomyces sp. VUL4_3 105 0 0 441 Actinomyces radicidentis 111015 species 1 1179 0 3 no rank 2609248 712122 1 species 0 Actinomyces sp. oral taxon 414 538 Actinomyces sp. Chiba101 373 0 species 1 1851395 Actinomyces sp. oral taxon 897 268 0 1 species 2081702 1981 Frankiales 0 7 order 35 85013 1 0 1946 Frankiaceae 74712 20 6 family 1 1854 5 genus 20 1 0 1926 Frankia Frankia casuarinae 340 0 1 species 106370 1 no rank 2632575 465 0 298653 1 species 0 465 Frankia sp. EAN1pec Frankia inefficax 498 0 1 species 298654 0 Frankia alni 603 1859 1 species 3 order 622450 372 0 1 3 family 3 622451 372 Actinopolysporaceae 0 2 genus 4 1849 1 Actinopolyspora 369 0 365 Actinopolyspora erythraea 0 1 species 414996 1 20 19 order 85008 8208 Micromonosporales 0 Micromonosporaceae 8188 0 1 18 family 140 28056 41 genus 6 1865 1 Actinoplanes 3378 0 1 species 196914 Actinoplanes friuliensis 779 0 0 1863 2626549 no rank 3 134676 1 species 0 574 Actinoplanes sp. SE50/110 0 Actinoplanes sp. SE50 574 2033844 1 species 715 Actinoplanes sp. N902-109 0 1 species 649831 0 Actinoplanes missouriensis 695 1866 species 1 1 44 genus 4 1873 1799 Micromonospora 0 Verrucosispora maris 477 0 1 species 1003110 621 Micromonospora aurantiaca 0 1 species 47850 1 no rank 2617518 657 0 Micromonospora sp. L5 657 0 species 1 648999 168694 3 3 genus 1 0 Salinispora 886 0 470 Salinispora tropica 168695 1 species 0 413 Salinispora arenicola 168697 species 1 1 genus 4 30 673534 Plantactinospora 1985 0 3 no rank 2631981 1955 0 0 Plantactinospora sp. BC1 622 2108470 1 species 1 species 2024580 640 Plantactinospora sp. KBS50 0 2071627 1 species 0 693 Plantactinospora sp. BB1 142 0 1 order 1643683 0 142 85032 1 family 28048 genus 1 0 142 Acidothermus cellulolyticus 142 0 1 species 28049 0 390 622452 order 2 390 Kineosporiaceae 0 2 family 12 83778 1 33981 genus 1 0 378 131568 1 species 0 378 Kineococcus radiotolerans 85012 46 16 order 1 0 Streptosporangiales 4969 0 Thermomonosporaceae 690 2012 5 3 family 1 0 Thermomonospora 685 1 2019 2 genus 10 675 Thermomonospora curvata 0 1 species 2020 1 2004 35 family 5 0 1998 Streptosporangiaceae 1 2 genus 9 83681 1278 Nonomuraea 0 no rank 1 2593643 1269 0 species 1 1909395 Nonomuraea sp. ATCC 55076 1269 0 685 Streptosporangium 0 1 5 2 genus 2000 1 species 2001 Streptosporangium roseum 680 0 Nocardiopsaceae 2235 0 20 7 family 83676 1 477 Thermobifida 0 1 2 genus 2 83677 475 Thermobifida fusca 0 1 species 2021 2013 28 4 genus 1 0 1738 Nocardiopsis Nocardiopsis alba 483 0 species 1 53437 0 559 Nocardiopsis gilva 280236 1 species 1 species 2014 Nocardiopsis dassonvillei 668 0 1 8 order 2 1643682 Geodermatophilales 1582 0 0 Geodermatophilaceae 1580 85030 7 family 26 1 1 11 genus 2 88138 712 Modestobacter 0 477641 1 species 0 Modestobacter marinus 701 Geodermatophilus 564 0 3 2 genus 1860 1 561 Geodermatophilus obscurus 0 1 species 1861 1 38501 4 2 genus 0 278 Blastococcus Blastococcus saxobsidens 274 0 1 species 138336 4 class 6 84995 1 786 Rubrobacteria 0 0 Rubrobacterales 782 84996 19 order 5 1 Rubrobacteraceae 763 0 1 family 4 1 84997 762 Rubrobacter 0 8 genus 3 42255 1 42256 1 species 0 Rubrobacter radiotolerans 152 602 Rubrobacter xylanophilus 0 1 species 49319 0 Coriobacteriia 58585 1 84998 118 class 31 84999 13 order 63 1 0 41540 Coriobacteriales 0 5083 Atopobiaceae 1643824 39 6 family 1 Olsenella 4516 0 1 44 4 genus 133925 0 1092 2638792 no rank 1 species 1 712411 1092 Olsenella sp. oral taxon 807 0 1 species 1805478 Olsenella sp. Marseille-P2300 1953 0 species 1 133926 Olsenella uli 1427 0 528 0 genus 1 2767353 1 species 1382 528 Atopobium parvulum 0 1 84107 6 family 182 0 36394 Coriobacteriaceae 102106 2 genus 16 1 0 34405 Collinsella 1 species 74426 34389 Collinsella aerofaciens 0 693 Coriobacterium 0 1 2 genus 2 33870 0 691 Coriobacterium glomerans 33871 1 species 1114 0 no rank 1 84113 1531429 1 species 0 1114 Coriobacteriaceae bacterium 68-1-3 1 1643822 order 17 204 0 Eggerthellales 16927 1643826 2394 family 16 1 0 16723 Eggerthellaceae 0 379 Cryptobacterium 84162 1 2 genus 1 Cryptobacterium curtum 378 0 1 species 84163 2 genus 4 84108 1 Slackia 1382 0 1 species 84110 Slackia heliotrinireducens 1378 0 0 Phoenicibacter 601 1981050 1 genus 2 1 0 600 Phoenicibacter massiliensis 1944646 1 species 1 84111 genus 3 48 0 Eggerthella 4705 1 species 84112 Eggerthella lenta 3644 0 2648737 1 no rank 0 1013 1 species 502558 1013 Eggerthella sp. YY7918 0 1 2 2 genus 79603 Denitrobacterium 1049 0 1 species 79604 1047 Denitrobacterium detoxificans 0 0 1684 447020 1 genus species 1 446660 1684 Adlercreutzia equolifaciens 0 4529 Gordonibacter 0 1 12 genus 3 644652 1841863 1 species 0 1801 Gordonibacter massiliensis 1 species 1335613 Gordonibacter urolithinfaciens 2716 0 1 1 5 class 1497346 Thermoleophilia 726 0 0 725 Solirubrobacterales 1 588673 14 4 order Conexibacteraceae 711 0 7 3 family 320583 1 0 Conexibacter 704 1 191494 2 genus 68 0 Conexibacter woesei 636 191495 1 species 1 2 6 class 84992 Acidimicrobiia 545 0 1 order 5 13 84993 Acidimicrobiales 543 0 0 380 2448023 family 2 0 380 Ilumatobacter 1 682522 8 genus 2 0 372 Ilumatobacter coccineus 467094 1 species 1 family 2 8 84994 150 Acidimicrobiaceae 0 0 142 53634 genus 1 142 Acidimicrobium ferrooxidans 0 1 species 53635 787 0 phylum 5 200940 787 0 5 class 67799 0 787 188710 order 5 0 787 Thermodesulfobacteriaceae 188711 family 5 3 1 444090 1 genus 0 57 1 species 1653476 Caldimicrobium thiodismutans 57 0 1740 genus 2 0 530 1 species 1741 183 Thermodesulfobacterium commune 0 0 Thermodesulfobacterium geofontis 347 1295609 1 species 197 0 genus 1 241192 0 Thermodesulfatator indicus 197 171695 1 species 3571 0 21 phylum 200783 0 Aquificae 3571 1 187857 9 21 class 1485951 2 order 3 1 0 Desulfurobacteriales 827 0 825 558314 2 family 64159 1 genus 0 690 1 species 64160 Desulfurobacterium thermolithotrophum 690 0 135 0 genus 1 171868 0 135 Thermovibrio ammonificans 228745 1 species 17 order 1 32069 1 2735 Aquificales 0 64898 10 family 0 1863 939 1 genus 0 47 940 species 1 0 47 Hydrogenobacter thermophilus 2713 genus 1 0 110 0 110 Aquifex aeolicus 63363 1 species genus 2 75905 170 0 1 species 136094 Thermocrinis albus 46 0 Thermocrinis ruber 124 0 species 1 75906 1 22 6 genus 168657 Hydrogenobaculum 1536 0 2622382 5 no rank 0 1514 547144 1 species 0 Hydrogenobaculum sp. HO 351 0 351 Hydrogenobaculum sp. SN 547146 1 species 380749 1 species 0 Hydrogenobaculum sp. Y04AAS1 110 1 species 547145 Hydrogenobaculum sp. SHO 351 0 species 1 547143 351 Hydrogenobaculum sp. 3684 0 0 92 90150 1 no rank 1 genus 412592 92 0 412593 1 species 0 92 Thermosulfidibacter takaii 224027 9 family 5 1 0 779 Hydrogenothermaceae genus 2 212790 580 0 0 485 2619248 no rank 1 Sulfurihydrogenibium sp. YO3AOP1 485 0 1 species 436114 0 Sulfurihydrogenibium azorense 95 309806 species 1 0 190 Persephonella 1 182899 2 genus 2 309805 species 1 0 Persephonella marina 188 9011 0 phylum 39 200918 0 9011 Thermotogae 188708 16 39 class 1 1643946 order 5 0 933 933 Kosmotogaceae 0 1 family 5 6 1643948 1 11 genus 2 1184396 Mesotoga 320 0 1184387 1 species 0 309 Mesotoga prima 651456 2 genus 0 607 204 Kosmotoga olearia 0 1 species 651457 0 Kosmotoga pacifica 403 1330330 1 species 1 1643947 order 6 3 0 Petrotogales 2034 2031 0 family 5 1643949 genus 3 21 160798 1 Marinitoga 1466 0 2640159 no rank 1 0 803 1545835 1 species 0 803 Marinitoga sp. 1137 149715 1 species 0 642 Marinitoga piezophila 0 235 28236 genus 1 1 species 69499 Petrotoga mobilis 235 0 0 330 1511648 genus 1 1006576 species 1 0 Defluviitoga tunisiensis 330 0 Thermotogales 6028 1 2419 27 order 3 1 17 family 3 188709 Thermotogaceae 3513 0 2335 120 11 genus 1 0 2283 Thermotoga 2336 species 1 0 Thermotoga maritima 244 1 species 93930 Thermotoga naphthophila 299 0 1 species 2337 Thermotoga neapolitana 119 0 0 274 Thermotoga petrophila 93929 1 species 1508419 1 species 0 130 Thermotoga caldifontis 2631113 no rank 4 0 970 1 species 1157948 Thermotoga sp. 2812B 271 0 126740 species 1 0 Thermotoga sp. RQ2 310 1 species 126738 Thermotoga sp. RQ7 117 0 1 species 1157947 272 Thermotoga sp. Cell2 0 species 1 1508420 Thermotoga profunda 127 0 1 1643951 genus 5 6 0 1227 Pseudothermotoga 0 240 Pseudothermotoga thermarum 119394 1 species 1 species 38322 410 Pseudothermotoga elfii 0 137 Pseudothermotoga hypogea 0 species 1 57487 434 Pseudothermotoga lettingae 0 1 species 177758 0 Fervidobacteriaceae 2512 1643950 9 family 6 1 1528 0 4 genus 2420 0 908 2676525 no rank 2 1 species 1437364 454 Thermosipho sp. 1070 0 1462747 species 1 0 Thermosipho sp. 1063 454 0 223 Thermosipho melanesiensis 46541 1 species 2421 1 species 0 397 Thermosipho africanus 1 2422 genus 4 3 0 Fervidobacterium 978 93466 species 1 0 Fervidobacterium pennivorans 346 334 Fervidobacterium nodosum 0 1 species 2424 2423 1 species 0 Fervidobacterium islandicum 295 0 457 68297 phylum 2 0 457 203486 2 class 457 0 order 2 203487 203488 2 family 0 457 0 457 13 genus 2 513050 1 species 0 156 Dictyoglomus turgidum 1 species 14 301 Dictyoglomus thermophilum 0 200938 phylum 4 0 392 0 392 118001 class 4 1 189769 4 order 9 0 392 Chrysiogenales 383 Chrysiogenaceae 0 1 3 3 family 189770 380 Desulfurispirillum 0 2 genus 1 393029 1 1 species 936456 Desulfurispirillum indicum 379 0 57 phylum 203691 27355 0 Spirochaetia 27355 0 1 141 class 57 203692 0 Brachyspirales 4286 1 1643686 order 7 1 143786 26 6 family 1 0 Brachyspiraceae 4285 4259 Brachyspira 0 1 5 genus 70 29521 1 species 84378 1069 Brachyspira murdochii 0 1466 Brachyspira pilosicoli 0 1 species 52584 species 1 159 Brachyspira hyodysenteriae 661 0 0 Brachyspira intermedia 993 84377 1 species 9 order 1643688 1925 0 170 family 9 2 1 0 1925 Leptospiraceae 1 2 genus 2 338321 136 Turneriella 0 Turneriella parva 134 0 species 1 29510 1 171 5 genus 6 0 1787 Leptospira 174 1 species 0 Leptospira borgpetersenii 433 633 Leptospira interrogans 0 1 species 173 1 species 28452 Leptospira alstonii 275 0 species 1 172 Leptospira biflexa 210 0 1 species 28183 Leptospira santarosai 231 0 0 21003 Spirochaetales 1 136 103 order 40 2254 0 16 family 1643685 1 genus 8 138 1 Borrelia 1149 0 143 1 species 0 Borrelia anserina 183 189 Borrelia duttonii 0 1 species 40834 142 1 species 0 141 Borrelia turicatae 0 Borrelia hermsii 82 140 1 species Borrelia recurrentis 187 0 1 species 44449 0 Borrelia parkeri 168 141 1 species 47466 1 species 0 Borrelia miyamotoi 198 Borreliella 1105 0 34 8 genus 64895 1 1 species 1674146 Borrelia mayonii 160 0 1 species 139 110 Borreliella burgdorferi 0 0 49 Borreliella valaisiana 62088 1 species 0 Borreliella garinii 260 29519 1 species 1 species 664662 Borreliella bavariensis 88 0 84 Borreliella bissettii 0 species 1 64897 320 Borreliella afzelii 0 species 1 29518 18646 Spirochaetaceae 0 135 23 family 137 1 0 Sediminispirochaeta 392 1 1911556 1 2 genus species 1 55206 391 Sediminispirochaeta smaragdinae 0 0 1908 Sphaerochaeta 1 399320 genus 4 2 species 1 1131707 Sphaerochaeta pleomorpha 457 0 0 Sphaerochaeta coccoides 814 273376 1 species 1131703 1 species 0 635 Sphaerochaeta globosa 1616789 1 genus 0 583 Salinispira pacifica 583 0 species 1 1307761 0 Treponema 14350 157 1335 12 genus 1 1 species 221027 Treponema putidum 976 0 1 species 150829 Treponema azotonutricium 775 0 2638727 no rank 1 0 1406 0 Treponema sp. OMZ 838 1406 1539298 1 species 88058 1 species 0 714 Treponema primitia 1 species 53435 Treponema paraluiscuniculi 47 0 409322 species 1 0 449 Treponema pedis 0 Treponema pallidum 52 160 1 species 0 690 Treponema denticola 158 1 species 1 species 215591 439 Treponema caldarium 0 0 6836 Treponema succinifaciens 167 species 1 Treponema brennaborense 631 0 1 species 81028 1278 Spirochaeta 0 1 7 3 genus 146 species 1 154 574 Spirochaeta thermophila 0 46355 1 species 0 Spirochaeta africana 697 0 7677433 1783270 clade 352 456828 1 phylum 0 247 genus 1 456826 247 0 0 247 Candidatus Cloacimonas acidaminovorans 456827 1 species 65842 phylum 3 0 1769 1 1 class 3 204430 1769 Fibrobacteria 0 1768 0 order 2 218872 204431 2 family 1 1 0 Fibrobacteraceae 1768 0 1767 832 1 genus species 1 833 Fibrobacter succinogenes 1767 0 142182 phylum 8 0 1950 0 1950 Gemmatimonadetes 1 219685 8 class 2 27 order 7 219686 1 Gemmatimonadales 1948 0 Gemmatimonadaceae 1921 0 1 6 family 7 219687 0 1029 Gemmatimonas 1 173479 17 3 genus 0 570 Gemmatimonas aurantiaca 173480 1 species 442 Gemmatimonas phototrophica 0 1 species 1379270 1 1706036 2 2 genus 0 Gemmatirosa 885 species 1 861299 Gemmatirosa kalamazoonesis 883 0 340 clade 68336 7673467 0 1611 0 phylum 6 1134404 795747 1 6 class 1 0 1611 Ignavibacteria 5 order 2 795748 1 1610 Ignavibacteriales 0 family 1 795749 874 0 874 0 genus 1 795750 1 species 591197 874 Ignavibacterium album 0 1 family 3 1334117 1 Melioribacteraceae 734 0 0 733 Melioribacter 1134403 2 genus 2 1 0 731 Melioribacter roseus 1134405 species 1 phylum 314 9 976 1 Bacteroidetes 7663811 0 0 Sphingobacteriia 19351 1 117747 5 class 22 5 21 order 200666 1 Sphingobacteriales 19346 0 1 30 20 family 84566 19341 Sphingobacteriaceae 0 423349 genus 4 5 1 0 Mucilaginibacter 4081 0 1554 2617802 1 no rank 1300914 1 species 0 Mucilaginibacter sp. PAMC 26640 1554 1 species 1234841 982 Mucilaginibacter sp. BJC16-A31 0 0 Mucilaginibacter gotjawali 1540 1550579 1 species 1 genus 929509 1484 0 0 1484 Solitalea canadensis 995 species 1 1177 0 genus 1 1649482 151895 species 1 0 1177 Pseudopedobacter saltans 84568 1 no rank 0 1197 1 species 1986952 1197 Sphingobacteriaceae bacterium GW460-11-11-14-LB5 0 5020 Sphingobacterium 0 1 5 6 genus 28453 1010 species 1 0 Sphingobacterium mizutaii 1020 0 3995 2609468 4 no rank 0 1273 Sphingobacterium sp. B29 1933220 species 1 0 Sphingobacterium sp. ML3W 664 1538644 1 species 2003121 1 species 0 Sphingobacterium sp. G1-14 1201 species 1 743722 Sphingobacterium sp. 21 857 0 84567 6 genus 13 1 0 Pedobacter 6352 1106 Pedobacter cryoconitis 0 1 species 188932 363852 1 species 0 Pedobacter ginsengisoli 1266 1 no rank 2628915 1220 0 1727164 1 species 0 1220 Pedobacter sp. PACM 27299 species 1 984 Pedobacter heparinus 1716 0 species 1 430522 1031 Pedobacter steynii 0 Flavobacteriia 98074 0 1 142 class 51 117743 141 order 57 200644 1 Flavobacteriales 98023 0 family 102 262 49546 1 57303 Flavobacteriaceae 0 732 0 genus 1 261827 1736674 1 species 0 Algibacter alginicilyticus 732 83612 1 genus 0 345 0 345 Psychroflexus torquis 57029 species 1 3 genus 6 111500 1 1256 Muricauda 0 516051 species 1 0 521 Muricauda lutaonensis 111501 1 species 0 729 Muricauda ruestringensis genus 1 1209327 554 0 554 Flavivirga eckloniae 0 1 species 1803846 493 0 genus 2 225842 no rank 2 2644710 493 0 1336794 species 1 0 Formosa sp. Hel1_33_131 347 1 species 1336795 Formosa sp. Hel3_A1_48 146 0 781 Robiginitalea 0 1 genus 2 2 252306 species 1 252307 779 Robiginitalea biformata 0 Salegentibacter 579 0 1 2 genus 2 143222 no rank 1 2633436 577 0 1729720 species 1 0 577 Salegentibacter sp. T436 6 genus 33 52959 1 Polaribacter 3711 0 0 Polaribacter reichenbachii 805 996801 1 species 1 species 1774273 Polaribacter vadi 823 0 196858 3 no rank 0 2050 0 645 Polaribacter sp. BM10 1529069 species 1 1 species 2058137 617 Polaribacter sp. ALD11 0 1 species 313598 Polaribacter sp. MED152 788 0 2194 Maribacter 0 1 5 genus 252356 1 0 Maribacter cobaltidurans 622 1178778 1 species 1571 0 no rank 3 2615042 1836467 species 1 0 Maribacter sp. T28 899 1 species 1644130 Maribacter sp. 1_2014MBL_MicDiv 321 0 313603 1 species 0 351 Maribacter sp. HTCC2170 8201 Flavobacterium 0 1 genus 9 13 237 1 species 1306519 Flavobacterium commune 1315 0 1763534 1 species 0 633 Flavobacterium crassostreae species 1 1492737 1194 Flavobacterium gilvum 0 Flavobacterium indicum 494 0 1 species 312277 996 1 species 0 1201 Flavobacterium columnare 0 497 Flavobacterium psychrophilum 96345 1 species Flavobacterium johnsoniae 2286 0 1 species 986 0 568 Flavobacterium branchiophilum 55197 1 species 0 1829 Tenacibaculum 104267 genus 5 4 1 1 species 1850252 Tenacibaculum todarodis 420 0 379 Tenacibaculum maritimum 0 1 species 107401 Tenacibaculum jejuense 532 0 1 species 584609 1 species 669041 494 Tenacibaculum dicentrarchi 0 0 1031 Zunongwangia 417127 2 genus 1 1 species 1 398743 1030 Zunongwangia profunda 0 2 5 genus 292691 1 3022 Gramella 0 0 Gramella forsetii 699 411153 species 1 0 902 Gramella sp. SH35 2126553 1 species 1 species 1913577 580 Gramella sp. LPB0144 0 839 Gramella flava 0 1 species 1486245 genus 1 393005 542 0 1 species 2069432 Tamlana sp. UJ94 542 0 2 no rank 61432 1358 0 species 1 531844 674 Flavobacteriaceae bacterium 3519-10 0 0 684 Flavobacteriaceae bacterium UJ101 1150389 1 species 54 5 genus 76831 1 Myroides 3507 0 0 1250 2642485 no rank 2 1458492 1 species 0 Myroides sp. ZB35 625 625 Myroides sp. A21 0 species 1 1583100 0 Myroides profundi 782 480520 1 species 0 1421 Myroides odoratimimus 76832 species 1 363408 5 genus 1 1 0 1225 Nonlabens 2615035 2 no rank 0 507 0 256 Nonlabens sp. MB-3u-79 2058134 1 species Nonlabens sp. MIC269 251 0 1 species 1476901 Nonlabens sediminis 305 0 1 species 319236 412 Nonlabens dokdonensis 0 1 species 328515 1 112040 2 genus 17 0 915 Zobellia 1 species 63186 898 Zobellia galactanivorans 0 178469 1 genus 0 730 616991 1 species 0 730 Arenibacter algicola 0 Capnocytophaga 15530 1 1016 15 genus 63 0 Capnocytophaga ochracea 1194 1018 1 species 28188 species 1 0 Capnocytophaga canimorsus 1262 6 no rank 2640652 5727 0 0 543 Capnocytophaga sp. H2931 1945657 1 species 0 Capnocytophaga sp. oral taxon 323 1403 1705617 1 species Capnocytophaga sp. H4358 540 0 species 1 1945658 1316593 species 1 0 Capnocytophaga sp. oral taxon 864 1269 1316596 species 1 0 Capnocytophaga sp. oral taxon 878 685 0 Capnocytophaga sp. ChDC OS43 1287 209053 1 species 1 species 28189 870 Capnocytophaga cynodegmi 0 Capnocytophaga leadbetteri 1051 0 1 species 327575 species 1 1017 Capnocytophaga gingivalis 868 0 0 973 Capnocytophaga stomatis 1848904 1 species 1 species 45243 Capnocytophaga haemolytica 1054 0 1019 1 species 0 Capnocytophaga sputigena 2468 496 0 genus 1 153265 101385 1 species 0 496 Aequorivita sublithincola 1 4 genus 3 326319 626 Dokdonia 0 437 0 no rank 2 2615033 288 Dokdonia sp. 4H-3-7-5 0 species 1 983548 species 1 313590 Dokdonia sp. MED134 149 0 326320 species 1 0 186 Dokdonia donghaensis 1176327 genus 1 0 252 252 0 1 no rank 2636237 1 species 2094025 Aureitalea sp. RR4-38 252 0 1 genus 216431 567 0 Croceibacter atlanticus 567 0 1 species 313588 1 genus 389486 402 0 402 0 no rank 1 2648869 402 Sediminicola sp. YIK13 0 1 species 1453352 798 0 genus 1 2700084 1850246 1 species 0 798 Lutibacter sp. LPB0138 1 1 3 genus 286104 Winogradskyella 661 0 0 660 2615021 2 no rank 294 Winogradskyella sp. J14-2 0 1 species 1936080 0 Winogradskyella sp. PG-2 366 754409 1 species Seonamhaeicola 272 0 1 2 genus 1649495 1 271 0 1 no rank 2622645 271 Seonamhaeicola sp. S2-3 0 1 species 1936081 0 321 1518147 1 genus 1790137 1 species 0 321 Wenyingzhuangia fucanilytica 0 990 291183 3 genus Lacinutrix venerupis 315 0 1 species 1486034 0 675 2647285 no rank 2 1 species 983544 339 Lacinutrix sp. 5H-3-7-4 0 1 species 2057808 Lacinutrix sp. Bg11-31 336 0 2 genus 2 358023 1 466 Lutibacter 0 Lutibacter profundi 464 0 species 1 1622118 357 0 genus 1 336276 0 357 2615019 1 no rank 0 357 Olleya sp. Bg11-27 2058135 1 species 1 genus 1204360 569 0 762954 1 species 0 569 Siansivirga zeaxanthinifaciens 1 104264 4 genus 3 0 1729 Cellulophaga 979 1 species 0 761 Cellulophaga lytica 76594 species 1 0 483 Cellulophaga baltica 0 Cellulophaga algicola 482 59600 1 species 1 10 family 2 39782 549 Blattabacteriaceae 0 0 547 Blattabacterium 1 34098 9 genus 3 452 0 6 no rank 2647581 624186 1 species 0 56 Blattabacterium sp. (Blattella germanica) species 1 1186051 38 Blattabacterium sp. (Blaberus giganteus) 0 0 Blattabacterium sp. (Nauphoeta cinerea) 93 1316444 species 1 species 1 367806 Blattabacterium sp. (Blatta orientalis) 35 0 0 71 Blattabacterium sp. (Periplaneta americana) 367488 species 1 Blattabacterium sp. (Mastotermes darwiniensis) 159 0 1 species 39768 1 species 164514 52 Blattabacterium punctulatus 0 1 species 1653831 40 Blattabacterium cuenoti 0 0 575 1853230 family 2 1 332102 genus 2 4 0 575 Fluviicola 0 571 Fluviicola taffensis 191579 1 species 1333713 2 family 0 676 0 676 Owenweeksia 267986 2 genus 2 1 253245 1 species 0 Owenweeksia hongkongensis 674 0 38437 2762318 20 family 36 genus 6 308865 1 Elizabethkingia 6699 0 1631 Elizabethkingia miricola 0 species 1 172045 1 species 238 Elizabethkingia meningoseptica 1355 0 1 species 1756150 Elizabethkingia genomosp. 4 538 0 Elizabethkingia anophelis 2241 0 1 species 1117645 1756149 species 1 0 Elizabethkingia genomosp. 3 898 0 398 1013 1 genus 0 Weeksella virosa 398 1014 1 species genus 1 34084 1013 0 34085 1 species 0 1013 Riemerella anatipestifer 1 23 2 genus 28250 20293 Ornithobacterium 0 1 species 28251 20270 Ornithobacterium rhinotracheale 0 2782232 10 no rank 0 10034 0 Chryseobacterium 9135 1 59732 96 genus 9 1324352 1 species 0 Chryseobacterium gallinarum 911 1685010 1 species 0 Chryseobacterium glaciei 1258 2593645 3 no rank 0 3130 1067 Chryseobacterium sp. IHB B 17019 0 1 species 1721091 0 Chryseobacterium sp. StRB126 892 878220 species 1 2015076 1 species 0 Chryseobacterium sp. T16E-39 1171 1265445 1 species 0 870 Chryseobacterium camelliae 1 species 253 2043 Chryseobacterium indologenes 0 Chryseobacterium piperi 827 0 1 species 558152 genus 1 2782228 899 0 Chryseobacterium taklimakanense 899 0 1 species 536441 0 328 313602 no rank 2 180 0 1 genus 336809 Candidatus Sulcia muelleri 180 0 1 species 336810 1940138 genus 1 0 148 1415657 1 species 0 148 Candidatus Walczuchella monophlebidarum 0 98 1755828 2 family 98 Ichthyobacterium 0 1 genus 2 1755829 1 Ichthyobacterium seriolicida 97 0 1 species 242600 1 5 class 5 1937959 Saprospiria 1784 0 1 1936988 order 4 7 0 Saprospirales 1779 1 1937961 2 family 1 0 Haliscomenobacteraceae 1486 1485 0 genus 1 2349 1 species 2350 1485 Haliscomenobacter hydrossis 0 0 286 89374 family 1 1007 genus 1 0 286 1 species 1008 Saprospira grandis 286 0 200643 class 70 67 1 0 Bacteroidia 7487705 Marinilabiliales 5713 0 order 10 11 1970189 1 762 0 1 family 1970190 1970191 1 genus 0 762 1 species 1307839 Salinivirga cyanobacteriivorans 762 0 1401 Marinifilaceae 0 1 5 2 family 1573805 genus 1 2060722 1396 0 0 Marinifilaceae bacterium SPP2 1396 1717717 1 species 0 Prolixibacteraceae 2750 1 1471398 11 3 family 2739 Draconibacterium 0 1 4 genus 2 1471399 1168034 1 species 0 2735 Draconibacterium orientale 1 family 3 4 558415 789 Marinilabiliaceae 0 0 Alkalitalea 785 1 1193324 1 2 genus Alkalitalea saponilacus 784 0 1 species 889453 0 7481925 Bacteroidales 1 171549 59 order 367 Paludibacteraceae 3518 0 family 3 1 2005523 1 Paludibacter 3517 0 17 2 genus 346096 1 0 3500 Paludibacter propionicigenes 185300 species 1 1 815 11 family 51 0 2954875 Bacteroidaceae 10 genus 78498 816 1 2954824 Bacteroides 0 0 185041 Bacteroides zoogleoformans 28119 1 species 0 297863 Bacteroides helcogenes 290053 1 species 818 1 species 0 591147 Bacteroides thetaiotaomicron 1 species 47678 Bacteroides caccae 115037 0 817 1 species 0 653252 Bacteroides fragilis 28113 species 1 0 219613 Bacteroides heparinolyticus species 1 28116 Bacteroides ovatus 291444 0 Bacteroides cellulosilyticus 307743 0 1 species 246787 species 1 1796613 Bacteroides caecimuris 215186 0 1 7 11 family 171552 Prevotellaceae 207833 0 838 10 genus 89 1 0 207826 Prevotella 7442 Prevotella denticola 0 1 species 28129 0 Prevotella melaninogenica 3392 28132 1 species 1 species 52227 10144 Prevotella dentalis 0 species 1 1177574 Prevotella jejuni 4041 0 2638335 1 no rank 0 1726 1726 Prevotella sp. oral taxon 299 0 species 1 652716 species 1 28131 162305 Prevotella intermedia 0 1 species 839 Prevotella ruminicola 8389 0 1 species 76123 4528 Prevotella enoeca 0 5770 Prevotella fusca 0 1 species 589436 0 Rikenellaceae 213436 171550 10 5 family 1 Mucinivorans 1812 0 2 genus 2 1611681 1 1 species 1433126 1810 Mucinivorans hirudinis 0 Alistipes 211614 0 1 20 2 genus 239759 Alistipes finegoldii 211594 0 1 species 214856 1 family 4 7 171551 Porphyromonadaceae 11533 0 0 Porphyromonas 11526 836 9 genus 3 1 1 species 837 Porphyromonas gingivalis 9495 0 Porphyromonas asaccharolytica 2022 0 species 1 28123 2005525 family 7 36 1 0 Tannerellaceae 612999 1 375288 61 genus 3 0 Parabacteroides 575305 0 Parabacteroides distasonis 194754 823 1 species no rank 1 2649774 380490 0 380490 Parabacteroides sp. CT06 0 1 species 2025876 195950 7 genus 3 1 0 37658 Tannerella 31254 Tannerella forsythia 0 1 species 28112 2620507 1 no rank 0 6397 712710 1 species 0 Tannerella sp. oral taxon HOT-286 6397 3211038 0 5 no rank 333046 0 3210311 909656 genus 3 0 Bacteroides dorei 394871 357276 species 1 Bacteroides salanitronis 90761 0 1 species 376805 0 Bacteroides vulgatus 2724679 821 species 1 0 727 Candidatus Azobacteroides 511434 2 2 genus 1 725 Candidatus Azobacteroides pseudotrichonymphae 0 1 species 511435 13639 0 family 6 2005520 0 2262 Fermentimonas 1 1784836 genus 2 8 0 Fermentimonas caenicola 2254 1562970 1 species 0 5894 Petrimonas 307628 2 genus 2 1 Petrimonas mucosa 5892 0 1 species 1642646 Proteiniphilum 5483 0 1 2 genus 4 294702 Proteiniphilum saccharofermentans 5479 0 1 species 1642647 Barnesiellaceae 154204 0 family 3 5 2005519 1 1 2 genus 21 397864 Barnesiella 154199 0 Barnesiella viscericola 154178 0 1 species 397865 1853231 2 family 0 97284 0 97284 Odoribacter 283168 genus 2 5 1 97279 Odoribacter splanchnicus 0 species 1 28118 1199 0 1 no rank 185291 1199 Bacteroidales bacterium CF 0 species 1 1400053 1100069 61 order 6 1 0 3328 Bacteroidetes Order II. Incertae sedis 563843 family 5 34 1 0 Rhodothermaceae 3267 146918 1 genus 0 534 146919 1 species 0 534 Salinibacter ruber 0 1216 1196022 no rank 1 Rhodothermaceae bacterium RA 1216 0 1 species 1779382 29548 2 genus 3 1 0 Rhodothermus 1483 1480 Rhodothermus marinus 0 species 1 29549 1 52 class 37 768503 Cytophagia 42805 0 1 order 51 60 768507 Cytophagales 42768 0 2 family 8 563798 1 3328 Cyclobacteriaceae 0 1158 Echinicola 0 1 genus 2 7 390846 390884 species 1 0 1151 Echinicola vietnamensis genus 1 246875 393 0 0 393 Algoriphagus sp. M8-2 1727163 1 species 232244 1 genus 0 572 0 572 Belliella baltica 232259 1 species Cyclobacterium 1203 0 1 3 genus 2 68288 1 species 320787 Cyclobacterium amurskyense 579 0 species 1 104 622 Cyclobacterium marinum 0 49 16 family 1853232 1 20490 Hymenobacteraceae 0 genus 4 11 1379908 1 Rufibacter 3906 0 0 1717 Rufibacter tibetensis 512763 1 species 0 2178 2639626 2 no rank 1 species 1379910 Rufibacter sp. DG31D 827 0 1351 Rufibacter sp. DG15C 0 1 species 1379909 22 genus 3 323449 1 3190 Pontibacter 0 1 species 388950 1753 Pontibacter akesuensis 0 0 1415 Pontibacter korlensis 400092 species 1 48 8 genus 89966 1 Hymenobacter 13345 0 Hymenobacter swuensis 1909 0 1 species 1446467 5 no rank 2615202 9620 0 0 Hymenobacter sp. DG25B 1741 1385664 1 species Hymenobacter sp. DG25A 1235 0 species 1 1385663 2350 Hymenobacter sp. PAMC 26628 0 species 1 1484118 1 species 1356852 2550 Hymenobacter sp. APR13 0 0 1744 Hymenobacter sp. PAMC 26554 1484116 1 species 0 1768 Hymenobacter sedentarius 1411621 species 1 1291 0 family 2 1853234 Persicobacter 1291 0 1 2 genus 3 59740 no rank 1 2664020 1288 0 0 1288 Persicobacter sp. JZB09 1085624 1 species Flammeovirgaceae 2534 0 3 family 3 200667 1 1 genus 59739 1252 0 0 1252 2637820 1 no rank 1 species 1191459 Flammeovirga sp. MY04 1252 0 1279 0 no rank 1 340671 1 species 1257021 1279 Flammeovirgaceae bacterium 311 0 1501348 3 family 0 390 1 genus 273135 263 0 263 0 1 no rank 2641185 Cardinium endosymbiont of Encarsia pergandiella 263 0 1 species 249402 0 127 Candidatus Amoebophilus 1 281119 2 genus 1 Candidatus Amoebophilus asiaticus 126 0 1 species 281120 89373 14 family 16 1 0 Cytophagaceae 13508 1 2 2 genus 978 1181 Cytophaga 0 985 1 species 0 1179 Cytophaga hutchinsonii 1 1 2 genus 120831 1730 Dyadobacter 0 1729 Dyadobacter fermentans 0 1 species 94254 0 1225 861914 genus 1 no rank 1 2620963 1225 0 1 species 1834519 1225 Fibrella sp. ES10-3-2-2 0 0 Spirosoma 6057 107 genus 6 13 1 564064 1 species 0 Spirosoma rigui 1485 0 Spirosoma montaniterrae 1162 1178516 1 species species 1 2057025 Spirosoma sp. HA7 1412 0 1173 Spirosoma radiotolerans 0 1 species 1379870 812 Spirosoma aerolatum 0 1 species 1211326 1 319458 1 genus 2 0 Leadbetterella 1090 1 species 316068 Leadbetterella byssophila 1089 0 0 Runella 2211 105 5 2 genus 1 106 1 species 0 2206 Runella slithyformis 463 0 1 family 2762301 463 0 genus 1 869806 1006 1 species 0 Marivirga tractuosa 463 0 704 1937968 family 1 genus 1 1937972 704 0 Bernardetia litoralis 704 0 1 species 999 0 10755 Chitinophagia 1 1853228 2 class 16 0 Chitinophagales 10753 1 1853229 4 order 15 0 Chitinophagaceae 10749 563835 26 family 14 1 2 genus 379899 2438 0 1567 Niabella soli 0 species 1 446683 species 1 1176587 Niabella ginsenosidivorans 871 0 1 1769012 1 2 genus 0 Arachidicoccus 1569 2636138 1 no rank 0 1568 1568 Arachidicoccus sp. BS20 0 1 species 1850526 Niastella 1619 0 1 2 genus 17 354354 354356 1 species 0 Niastella koreensis 1602 0 Filimonas 1626 649460 2 genus 1 1 477680 1 species 0 Filimonas lacunae 1625 0 Chitinophaga 2656 79328 3 genus 2 1 0 2052 Chitinophaga pinensis 79329 1 species species 1 2029983 Chitinophagaceae bacterium 13 602 0 0 Flavisolibacter 815 398041 2 genus 9 1 806 Flavisolibacter tropicus 0 1 species 1492898 0 8045 1090 phylum 20 0 8045 Chlorobia 1 191410 20 class 12 8033 Chlorobiales 0 1 order 19 74 191411 0 Chlorobiaceae 7959 1 191412 8 18 family Chlorobaculum 2166 0 1 5 genus 4 256319 1 species 1097 500 Chlorobaculum tepidum 0 1 species 274537 991 Chlorobaculum limnaeum 0 670 Chlorobaculum parvum 0 1 species 274539 1988 0 4 genus 1101 1431 0 3 no rank 2632826 1868325 1 species 0 Prosthecochloris sp. CIB 2401 371 species 1 1974213 382 Prosthecochloris sp. HL-130-GSB 0 1 species 281093 Prosthecochloris sp. GSB1 678 0 1102 1 species 0 557 Prosthecochloris aestuarii 274493 7 no rank 0 3439 1099 4 3 genus 1 0 1087 Pelodictyon 395 Pelodictyon phaeoclathratiforme 0 1 species 34090 1100 species 1 0 Pelodictyon luteolum 688 0 2352 1091 genus 4 1096 1 species 0 934 Chlorobium phaeobacteroides 1 species 337090 Chlorobium chlorochromatii 517 0 1 species 1092 519 Chlorobium limicola 0 1 species 1094 382 Chlorobium phaeovibrioides 0 100715 2 genus 2 1 0 Chloroherpeton 358 Chloroherpeton thalassium 356 0 1 species 100716 0 244 2323 no rank 2 0 244 1783234 clade 2 phylum 1 95818 97 0 97 0 1 no rank 1895827 97 Candidatus Saccharibacteria bacterium YM_S32_TM7_50_20 0 1 species 2056494 1 clade 95901 147 0 2497643 1 class 0 147 2497644 1 order 0 147 147 0 family 1 2497645 1551504 genus 1 0 147 147 Candidatus Babela massiliensis 0 1 species 673862 330 0 clade 4 2498710 phylum 4 67814 330 0 0 330 Caldisericia 1 693071 4 class 11 319 Caldisericales 0 5 3 order 693072 1 693073 family 2 0 314 1 693074 2 genus 10 0 Caldisericum 314 0 304 Caldisericum exile 693075 1 species 57723 18 phylum 0 4654 2 class 1562566 462 0 4 2 genus 458032 1 Chloracidobacterium 462 0 458033 1 species 0 458 Chloracidobacterium thermophilum Acidobacteriia 4192 0 1 class 16 14 204432 1 204433 18 order 11 0 Acidobacteriales 3409 Acidobacteriaceae 3391 0 1 family 10 27 204434 1 33973 6 2 genus 0 601 Acidobacterium 1 species 33075 595 Acidobacterium capsulatum 0 1140 Terriglobus 0 1 3 genus 1 392733 0 512 Terriglobus saanensis 870903 1 species 392734 1 species 0 Terriglobus roseus 627 0 1203 Granulicella 940557 genus 3 12 1 0 700 Granulicella mallensis 940614 1 species 1 species 940615 Granulicella tundricola 491 0 420 0 1 genus 658061 0 Candidatus Koribacter versatilis 420 658062 1 species 1 332160 2 4 order 0 Solibacterales 769 0 767 Solibacteraceae 332161 3 family 6 1 3 2 genus 332162 1 761 Candidatus Solibacter 0 species 1 332163 758 Candidatus Solibacter usitatus 0 0 15469 32066 23 phylum 0 Fusobacteriia 15469 1 203490 23 class 8 203491 25 order 22 1 0 Fusobacteriales 15461 0 11219 Fusobacteriaceae 203492 10 12 family 1 26 9 genus 848 1 9975 Fusobacterium 0 1 species 860 Fusobacterium periodonticum 1733 0 0 Fusobacterium mortiferum 471 850 1 species 1 species 861 838 Fusobacterium ulcerans 0 0 Fusobacterium hwasookii 972 1583098 1 species 0 Fusobacterium varium 1514 856 1 species 1 species 851 3295 Fusobacterium nucleatum 0 Fusobacterium necrophorum 630 0 1 species 859 Fusobacterium gonidiaformans 496 0 1 species 849 1 167639 1 2 genus 0 Ilyobacter 1234 1233 Ilyobacter polytropus 0 1 species 167642 4217 Leptotrichiaceae 0 5 9 family 1129771 1 2397 Leptotrichia 0 1 5 genus 1 32067 1 species 40542 Leptotrichia buccalis 764 0 2633022 no rank 3 0 1632 Leptotrichia sp. oral taxon 212 895 0 1 species 712357 species 1 1785996 Leptotrichia sp. oral taxon 847 317 0 species 1 712368 420 Leptotrichia sp. oral taxon 498 0 0 512 168808 genus 1 1 species 187101 Sneathia amnii 512 0 0 516 34104 genus 1 516 Streptobacillus moniliformis 0 species 1 34105 787 0 genus 1 32068 1 species 826 787 Sebaldella termitidis 0 0 17336 1783257 77 clade 0 6870 Verrucomicrobia 74201 8 23 phylum 1 1 class 134549 24 0 1 genus 134550 24 0 2648876 1 no rank 0 24 24 Candidatus Xiphinematobacter sp. Idaho Grape 0 1 species 1704307 2 no rank 417295 1146 0 0 745 Verrucomicrobia bacterium 2026799 species 1 1637999 1 species 0 Verrucomicrobia bacterium IMCC26134 401 3 class 1955630 357 0 357 0 3 order 717963 717964 3 family 1 1 0 357 Methylacidiphilaceae 356 0 2 genus 511745 Methylacidiphilum fumariolicum 207 0 1 species 591154 0 149 Methylacidiphilum infernorum 511746 1 species 7 class 10 414999 1 Opitutae 2625 0 1 415000 22 6 order 0 2276 Opitutales 1 family 5 26 134623 2254 Opitutaceae 0 178440 genus 1 0 603 107709 species 1 0 603 Opitutus terrae 278955 1 no rank 0 1153 794903 1 species 0 1153 Opitutaceae bacterium TAV5 1 1961799 3 genus 2 0 472 Lacunisphaera Lacunisphaera limnophila 469 0 species 1 1838286 415001 2 3 order 1 0 342 Puniceicoccales family 2 415002 340 0 0 340 Coraliomargarita 1 442430 genus 2 3 1 species 395922 Coraliomargarita akajimensis 337 0 2 6 class 203494 1 Verrucomicrobiae 2710 0 0 Verrucomicrobiales 2708 1 48461 10 order 5 2698 Akkermansiaceae 0 1 family 4 9 1647988 239934 26 genus 3 1 0 Akkermansia 2689 Akkermansia glycaniphila 997 0 1 species 1679444 239935 1 species 0 1666 Akkermansia muciniphila 1843 0 phylum 3 256845 103 class 3 1313211 1 1843 Lentisphaeria 0 0 Victivallales 1740 1 278082 2 order 103 1 no rank 1674876 1637 0 1 species 2094242 1637 Victivallales bacterium CCUG 44730 0 134625 phylum 4 0 481 481 Kiritimatiellae 0 1 6 4 class 1921781 0 Kiritimatiellales 475 1 1921782 order 3 6 2 family 1921783 469 0 469 Kiritimatiella 0 3 2 genus 1921784 1 0 466 Kiritimatiella glycovorans 1307763 1 species 29 phylum 203682 6955 0 0 Planctomycetia 5464 203683 24 class 20 1 562 0 order 2 2691355 0 562 1914233 family 2 1 2 genus 1 113 562 Gemmata 0 561 0 1 no rank 2622970 1 species 1630693 561 Gemmata sp. SH-PL17 0 658 0 order 4 2691354 165 0 family 1 2691358 1676125 1 genus 0 165 165 Thermogutta terrifontis 0 species 1 1331910 family 3 2691357 493 0 genus 1 265488 336 0 species 1 265606 Rhodopirellula baltica 336 0 123 1 genus 2 1 0 Pirellula 157 species 1 125 156 Pirellula staleyi 0 order 5 2691356 1375 0 1763524 5 family 4 1 0 1375 Isosphaeraceae 1 genus 127 341 0 0 Isosphaera pallida 341 128 1 species 614 Paludisphaera 0 2 genus 3 1763521 1 species 1 1387353 Paludisphaera borealis 611 0 0 416 466152 1 genus 466153 species 1 0 Singulisphaera acidiphila 416 2845 Planctomycetales 0 1 8 order 58 112 126 family 7 8 1 0 2787 Planctomycetaceae 3 genus 12 118 1 1426 Planctomyces 0 1414 0 no rank 2 2648843 1 species 1632864 507 Planctomyces sp. SH-PL14 0 907 Planctomyces sp. SH-PL62 0 1 species 1636152 1649490 genus 1 0 205 Rubinisphaera brasiliensis 205 0 1 species 119 genus 1 1649480 362 0 362 Planctopirus limnophila 0 species 1 120 1936111 1 genus 0 786 0 Fuerstia marisgermanicae 786 1891926 1 species 0 1187 Phycisphaerae 666505 2 class 6 1 2483366 order 2 0 744 0 744 2483367 2 family 2 genus 2483368 744 0 1940790 species 1 0 Phycisphaerae bacterium L21-RPul-D3 337 407 Phycisphaerae bacterium ST-PulAB-D4 0 species 1 1941349 666506 order 3 3 1 0 441 Phycisphaerales 1 2 family 2 666507 Phycisphaeraceae 438 0 0 436 666508 1 genus Phycisphaera mikurensis 436 0 1 species 547188 class 3 2517206 304 0 1 1127829 5 order 3 0 Candidatus Brocadiales 304 0 299 Candidatus Brocadiaceae 1 1127830 1 family 2 genus 1 380738 298 0 0 Candidatus Kuenenia stuttgartiensis 298 174633 species 1 1187 0 phylum 18 204428 18 class 204429 1187 0 0 470 1963360 order 5 0 44 92712 family 1 44 0 genus 1 34093 83561 1 species 0 44 Simkania negevensis 2 family 92713 237 0 1 genus 83551 114 0 1 species 83552 Parachlamydia acanthamoebae 114 0 282132 genus 1 0 123 species 1 389348 123 Candidatus Protochlamydia naegleriophila 0 0 189 92714 2 family 189 Waddlia 0 1 2 genus 4 71666 species 1 71667 Waddlia chondrophila 185 0 Chlamydiales 717 0 1 2 order 13 51291 809 12 family 0 715 0 715 1113537 no rank 12 0 Chlamydia 715 1 810 12 genus 7 0 Chlamydia trachomatis 39 813 1 species 0 62 Chlamydia suis 83559 1 species species 1 83556 Chlamydia felis 67 0 0 Chlamydia pneumoniae 59 83558 species 1 0 Chlamydia abortus 45 83555 1 species 0 Chlamydia gallinacea 92 1457153 1 species 83560 1 species 0 32 Chlamydia muridarum 1 species 1457141 41 Chlamydia avium 0 83554 1 species 0 97 Chlamydia psittaci 85991 1 species 0 Chlamydia pecorum 121 83557 1 species 0 Chlamydia caviae 53 1224 234 1941 phylum 1 0 Proteobacteria 838644 1 535 class 537 28211 186260 Alphaproteobacteria 0 Pelagibacterales 622 0 1 1 6 order 54526 family 4 1655514 482 0 2 genus 198251 232 0 0 146 2647897 no rank 1 0 Candidatus Pelagibacter sp. IMCC9063 146 1002672 1 species 198252 1 species 0 Candidatus Pelagibacter ubique 86 0 250 1655516 2 no rank 1 species 859653 64 alpha proteobacterium HIMB5 0 species 1 744985 186 alpha proteobacterium HIMB59 0 2045213 genus 1 0 139 1 species 1925548 Candidatus Fonsibacter ubiquis 139 0 Rhodobacterales 31453 0 83 order 168 204455 1 0 31285 Rhodobacteraceae 1 31989 82 family 481 0 Defluviimonas 506 1097466 2 genus 1 1 1335048 1 species 0 Defluviimonas alba 505 0 338 285107 1 genus Thioclava nitratireducens 338 0 1 species 1915078 159345 genus 1 0 292 Roseibacterium elongatum 292 0 species 1 159346 0 4055 Phaeobacter 1 302485 5 genus 18 1 species 1580596 Phaeobacter piscinae 1705 0 0 178 Phaeobacter porticola 1844006 species 1 221822 1 species 0 Phaeobacter inhibens 1221 933 Phaeobacter gallaeciensis 0 1 species 60890 1 875170 5 genus 6 0 1567 Celeribacter 1208324 1 species 0 Celeribacter indicus 491 341 Celeribacter ethanolicus 0 1 species 1758178 1 species 1397108 Celeribacter marinus 136 0 1 species 1411902 593 Celeribacter manganoxidans 0 0 724 58842 genus 1 2624628 1 no rank 0 724 0 Sagittula sp. P11 724 2009329 1 species 1 20 genus 4 34008 1235 Rhodovulum 0 0 Rhodovulum sulfidophilum 623 35806 species 1 no rank 2 2631432 592 0 1 species 308754 Rhodovulum sp. MB263 316 0 Rhodovulum sp. P5 276 0 1 species 1564506 1410 0 genus 2 263377 0 578 2640570 1 no rank 1792508 1 species 0 578 Yangia sp. CCB-MM3 Thiobacimonas profunda 832 0 species 1 1229727 1 1060 33 5 genus 0 3029 Rhodobacter 0 686 196779 2 no rank species 1 1850250 288 Rhodobacter sp. LPB0142 0 0 398 Rhodobacter sp. CZR27 2033869 1 species 814 Rhodobacter capsulatus 0 1 species 1061 species 1 1063 Rhodobacter sphaeroides 1496 0 0 416 74032 genus 1 1 species 74033 416 Antarctobacter heliothermus 0 genus 2 3 227873 1 Pannonibacter 696 0 121719 species 1 0 693 Pannonibacter phragmitetus 1 53945 4 genus 1 0 Octadecabacter 803 0 393 Octadecabacter arcticus 53946 1 species 1217908 1 species 0 221 Octadecabacter antarcticus 1458307 species 1 0 188 Octadecabacter temperatus 1 genus 1649279 759 0 Ruegeria mobilis 759 0 1 species 379347 1 genus 2 1 367771 396 Marinovum 0 395 Marinovum algicola 0 species 1 42444 21 genus 3 92944 1 Ketogulonicigenium 565 0 92947 1 species 0 Ketogulonicigenium robustum 251 92945 1 species 0 Ketogulonicigenium vulgare 293 0 775 Confluentimicrobium 1 1609958 2 genus 3 no rank 1 2643318 772 0 1 species 1609966 Confluentimicrobium sp. EMB200-NS6 772 0 0 268 Dinoroseobacter 309512 2 2 genus 1 215813 1 species 0 Dinoroseobacter shibae 266 24 genus 4 478070 1 2364 Labrenzia 0 1589 0 no rank 2 2648686 0 Labrenzia sp. VG12 788 2021862 1 species 1674922 species 1 0 801 Labrenzia sp. CP4 Labrenzia aggregata 751 0 species 1 187304 0 Ruegeria 1050 1 97050 3 genus 3 0 345 2625375 no rank 1 292414 1 species 0 Ruegeria sp. TM1040 345 89184 1 species 0 702 Ruegeria pomeroyi 1 1579315 2 genus 1 0 178 Halocynthiibacter Halocynthiibacter arcticus 177 0 1 species 1579316 2211641 1 genus 0 476 0 476 Loktanella vestfoldensis 245188 species 1 2433 genus 2 0 545 Roseobacter litoralis 204 0 1 species 42443 0 341 Roseobacter denitrificans 2434 species 1 389 0 genus 1 74030 389 Roseovarius mucosus 0 1 species 215743 1 191028 3 2 genus 0 416 Leisingera 0 413 Leisingera methylohalidivorans 133924 1 species 0 Sulfitobacter 892 1 60136 3 genus 2 1 species 1402135 Sulfitobacter pseudonitzschiae 476 0 1 no rank 196795 414 0 414 Sulfitobacter sp. AM1-D1 0 1 species 1917485 233 0 genus 1 1759396 2622455 1 no rank 0 233 1920883 1 species 0 233 Marivivens sp. JLT3646 2 no rank 58840 670 0 393 Rhodobacteraceae bacterium 0 species 1 1904441 2033435 1 species 0 Rhodobacteraceae bacterium QY30 277 Thalassococcus 1 0 1 genus 436357 299261 genus 1 0 489 489 Tateyamaria omphalii 0 1 species 299262 1 genus 119541 293 0 0 293 Rhodobaca barguzinensis 441209 1 species 1 genus 1284657 97 0 1 species 1284658 Planktomarina temperata 97 0 265 9 genus 46 1 0 Paracoccus 4058 Paracoccus yeei 732 0 species 1 147645 473 Paracoccus contaminans 0 1 species 1945662 species 1 266 Paracoccus denitrificans 574 0 0 Paracoccus sp. CBA4604 364 2065379 species 1 243 0 no rank 1 246570 0 Paracoccus sp. BM15 243 1529068 1 species 0 Paracoccus aminovorans 455 34004 1 species species 1 1077935 769 Paracoccus zhejiangensis 0 0 Paracoccus aminophilus 402 34003 species 1 1 2 genus 188905 1 Jannaschia 250 0 no rank 1 2645469 249 0 1 species 290400 249 Jannaschia sp. CCS1 0 Pelagibaca 569 0 1 2 genus 12 360528 1250539 1 species 0 Pelagibaca abyssi 557 1 204457 161 81 order 0 31195 Sphingomonadales 24480 Sphingomonadaceae 0 1 58 family 372 41297 0 Blastomonas 617 150203 genus 2 1 1 0 616 2626550 no rank 1 1 species 1842535 Blastomonas sp. RAC04 616 0 1649486 genus 1 0 479 0 479 Rhizorhabdus dicambivorans 1850238 species 1 1 17 2 genus 72173 Citromicrobium 351 0 334 0 no rank 1 2630544 0 Citromicrobium sp. JL477 334 1634516 species 1 1 165696 5 genus 46 0 3875 Novosphingobium 604 Novosphingobium aromaticivorans 0 1 species 48935 158500 1 species 0 1062 Novosphingobium resinovorum 205844 1 species 0 975 Novosphingobium pentaromativorans 2644732 1 no rank 0 1188 0 Novosphingobium sp. PP1Y 1188 702113 1 species 0 Sphingopyxis 3213 1 165697 50 genus 10 no rank 4 2614943 1224 0 Sphingopyxis sp. 113P3 397 0 1 species 292913 1866325 1 species 0 Sphingopyxis sp. MG 350 1357916 1 species 0 Sphingopyxis sp. QXT-31 399 species 1 1913578 78 Sphingopyxis sp. LPB0140 0 33050 1 species 0 Sphingopyxis macrogoltabida 688 1 species 33052 Sphingopyxis terrae 224 0 279 Sphingopyxis alaskensis 0 1 species 117207 species 1 1515612 Sphingopyxis fribergensis 387 0 0 Sphingopyxis granuli 361 267128 1 species 2685927 1 genus 0 374 1 species 1921510 Sphingomonas sp. JJ-A5 374 0 6513 Sphingobium 0 15 genus 154 165695 1 325 Sphingobium baderi 0 species 1 1332080 no rank 6 2611147 2452 0 0 Sphingobium sp. MI1205 478 407020 1 species species 1 484429 619 Sphingobium sp. YBL2 0 0 220 Sphingobium sp. EP60837 1855519 1 species Sphingobium sp. TKS 465 0 1 species 1315974 1 species 627192 Sphingobium sp. SYK-6 316 0 Sphingobium sp. RAC03 354 0 1 species 1843368 0 Sphingobium herbicidovorans 507 76947 1 species 1 species 332056 Sphingobium japonicum 515 0 1 species 332055 428 Sphingobium indicum 0 Sphingobium chlorophenolicum 653 0 species 1 46429 1 species 120107 Sphingobium cloacae 489 0 1 species 1673076 Sphingobium hydrophobicum 520 0 0 Sphingobium yanoikuyae 470 13690 species 1 1 541 4 2 genus 0 693 Zymomonas species 1 542 Zymomonas mobilis 689 0 0 7006 Sphingomonas 13687 125 15 genus 1 0 Sphingomonas wittichii 1330 160791 species 2 646 1 Sphingomonas sp. DC-6 684 0 1 strain 1283312 516 Sphingomonas taxi 0 1 species 1549858 6 no rank 196159 2821 0 1 species 1030157 405 Sphingomonas sp. KC8 0 0 651 Sphingomonas sp. LK11 1390395 1 species 1327635 species 1 0 Sphingomonas sp. Cra20 317 1961362 species 1 0 448 Sphingomonas sp. NIC1 0 Sphingomonas sp. LM7 525 1938607 species 1 745310 1 species 0 Sphingomonas sp. MM-1 475 1 species 1609977 410 Sphingomonas hengshuiensis 0 0 Sphingomonas koreensis 466 93064 1 species 1 species 1560345 351 Sphingomonas panacis 0 Sphingomonas melonis 361 0 1 species 152682 0 Sphingomonas sanxanigenens 626 397260 species 1 1434046 7 3 genus 1 0 Sphingorhabdus 637 0 630 2614947 no rank 2 species 1 1806885 Sphingorhabdus sp. M41 366 0 Sphingorhabdus sp. YGSMI21 264 0 1 species 2077182 0 350 2709685 1 genus 1 species 266812 350 Sphingorhabdus flavimaris 0 Erythrobacteraceae 6554 0 116 family 22 335929 1 851 Croceicoccus 0 1 49 3 genus 1295327 413 Croceicoccus naphthovorans 0 species 1 1348774 389 Croceicoccus marinus 0 1 species 450378 0 866 Altererythrobacter 1 361177 4 genus 59 1267766 1 species 0 Altererythrobacter atlanticus 352 1 species 476157 201 Altererythrobacter ishigakiensis 0 254 Altererythrobacter epoxidivorans 0 1 species 361183 genus 1 2800682 745 0 Altererythrobacter namhicola 745 0 1 species 645517 1855416 2 genus 0 753 0 477 Erythrobacter seohaensis 266951 species 1 species 1 192812 Erythrobacter flavus 276 0 0 1563 2800788 no rank 6 Porphyrobacter 690 0 3 genus 40 1111 1 650 0 no rank 2 2683265 353 Porphyrobacter sp. LM 6 0 1 species 1896196 Porphyrobacter HT-58-2 297 0 1 species 2023229 genus 3 31 1041 1 Erythrobacter 873 0 347 Porphyrobacter neustonensis 0 species 1 1112 39960 1 species 0 Erythrobacter litoralis 495 genus 2 2800681 557 0 Erythrobacter atlanticus 180 0 species 1 1648404 0 377 Erythrobacter gangjinensis 502682 1 species 2 genus 2800686 519 0 1 species 1982042 262 Altererythrobacter mangrovi 0 0 257 Altererythrobacter dongtanensis 692370 1 species 584 0 genus 1 2800685 543877 species 1 0 Altererythrobacter marensis 584 710 0 5 order 2800060 1 69657 family 5 9 0 Hyphomonadaceae 710 0 Hyphomonas 626 1 85 3 genus 15 238 0 1 no rank 2630699 1906738 1 species 0 238 Hyphomonas sp. Mor2 Hyphomonas neptunium 373 0 1 species 81032 75 0 1 genus 2723 75 Hirschia baltica 0 1 species 2724 order 6 2 1921002 1 Holosporales 452 0 79 Candidatus Paracaedibacteraceae 0 2 3 family 1777752 1 1 2 genus 1521255 1 Candidatus Paracaedibacter 77 0 1 species 91604 76 Candidatus Paracaedibacter acanthamoebae 0 0 104 2100208 1 family 1 genus 1509243 104 0 1509244 species 1 0 104 Candidatus Nucleicultrix amoebiphila 0 267 44746 family 1 267 0 1 no rank 204454 endosymbiont of Acanthamoeba sp. UWC8 267 0 1 species 86106 0 79899 Rhizobiales 1 356 204 order 691 0 Bradyrhizobiaceae 13440 41294 263 family 26 1 Rhodopseudomonas 3346 0 1 2 genus 32 1073 1 species 1076 Rhodopseudomonas palustris 3314 0 0 250 Variibacter 1649510 genus 2 12 1 238 Variibacter gotjawalensis 0 1 species 1333996 1 374 188 genus 11 0 6564 Bradyrhizobium no rank 6 2631580 3197 0 1 species 115808 Bradyrhizobium sp. ORS 285 464 0 Bradyrhizobium sp. 471 0 1 species 376 1 species 2057741 Bradyrhizobium sp. SK17 541 0 0 Bradyrhizobium sp. BTAi1 594 288000 1 species 0 582 Bradyrhizobium sp. ORS 278 114615 1 species 1223566 1 species 0 Bradyrhizobium sp. CCGE-LA001 545 375 1 species 0 Bradyrhizobium japonicum 1018 Bradyrhizobium icense 428 0 species 1 1274631 species 1 44255 628 Bradyrhizobium oligotrophicum 0 0 1105 Bradyrhizobium diazoefficiens 1355477 species 1 0 429 Nitrobacter 1 911 3 genus 2 Nitrobacter hamburgensis 185 0 1 species 912 species 1 913 Nitrobacter winogradskyi 242 0 1 5 genus 69 85413 Bosea 2317 0 0 626 Bosea vaviloviae 1526658 1 species 0 1622 2653178 no rank 3 0 Bosea sp. PAMC 26642 539 1792307 species 1 2015316 1 species 0 Bosea sp. AS-1 606 Bosea sp. RAC05 477 0 1 species 1842539 0 271 Oligotropha 1 40136 2 genus 2 1 species 40137 269 Oligotropha carboxidovorans 0 2049 Xanthobacteraceae 0 14 7 family 335928 1 1 genus 2 11 6 Azorhizobium 766 0 Azorhizobium caulinodans 755 0 1 species 7 631 Starkeya 0 1 2 genus 13 152053 Starkeya novella 618 0 1 species 921 1 279 41 2 genus 0 Xanthobacter 638 Xanthobacter autotrophicus 597 0 1 species 280 1 69277 family 19 32 0 Phyllobacteriaceae 7826 20 2 genus 245876 1 Nitratireductor 339 0 1 species 472175 319 Nitratireductor basaltis 0 2 genus 4 31988 1 Aminobacter 776 0 1 species 83263 Aminobacter aminovorans 772 0 449972 1 genus 0 1238 2643807 no rank 1 0 1238 Chelativorans sp. BNC1 1238 0 species 1 266779 1 2 genus 3 28100 Phyllobacterium 527 0 0 524 Phyllobacterium zundukense 1867719 1 species 1 genus 9 82 68287 4406 Mesorhizobium 0 Mesorhizobium australicum 550 0 1 species 536018 325217 no rank 1 0 386 Mesorhizobium sp. WSM1497 386 0 1 species 278153 0 Mesorhizobium opportunistum 540 593909 1 species 2066070 1 species 0 Mesorhizobium japonicum 647 381 1 species 0 Mesorhizobium loti 561 species 1 71433 Mesorhizobium amorphae 486 0 Mesorhizobium ciceri 716 0 species 1 39645 1 species 1670800 Mesorhizobium sp. B7 438 0 1 1 2 genus 274591 508 Hoeflea 0 no rank 1 2614931 507 0 1 species 1620421 Hoeflea sp. IMCC20628 507 0 no rank 6 119042 1437 0 1 genus 2 1572860 1 568 Hartmannibacter 0 1482074 1 species 0 567 Hartmannibacter diazotrophicus 1 1484898 genus 2 3 0 Methyloceanibacter 378 0 375 Methyloceanibacter caenitepidi 1384459 1 species 1734920 genus 2 25 1 0 491 Pseudorhodoplanes Pseudorhodoplanes sinuspersici 466 0 1 species 1235591 1 45401 18 family 17 0 Hyphomicrobiaceae 5320 15 genus 2 29407 1 742 Rhodoplanes 0 no rank 1 2619116 727 0 674703 1 species 0 727 Rhodoplanes sp. Z2-YC6860 119044 genus 1 0 146 0 146 Candidatus Filomicrobium marinum 1608628 1 species 0 Devosia 1872 46913 4 genus 65 1 no rank 3 196773 1807 0 0 533 Devosia sp. I507 2083786 1 species 707 Devosia sp. A16 0 species 1 1736675 0 Devosia sp. H5989 567 1643450 1 species 1082930 4 genus 2 1 0 Pelagibacterium 197 0 193 Pelagibacterium halotolerans 531813 1 species 81 4 genus 12 1 0 1481 Hyphomicrobium 347 0 no rank 1 2619925 1 species 717785 Hyphomicrobium sp. MC1 347 0 Hyphomicrobium nitrativorans 477 0 species 1 1427356 1 species 53399 Hyphomicrobium denitrificans 645 0 1 genus 1068 450 0 Rhodomicrobium vannielii 450 0 species 1 1069 0 Blastochloris 414 1 59282 12 genus 2 0 402 Blastochloris viridis 1079 1 species 0 437 119043 family 2 0 Parvibaculum 437 256616 6 2 genus 1 1 species 256618 Parvibaculum lavamentivorans 431 0 1 772 family 18 1 0 Bartonellaceae 3833 1 10 17 genus 773 3832 Bartonella 0 803 1 species 0 Bartonella quintana 373 1 species 85701 Bartonella tribocorum 239 0 1 species 38323 84 Bartonella henselae 0 1 species 1686310 Bartonella apis 883 0 6 no rank 2645622 1244 0 0 Bartonella sp. A1379B 224 1933910 1 species 0 227 Bartonella sp. Raccoon60 1933912 1 species 0 150 Bartonella sp. WD16.2 1933904 species 1 237 Bartonella sp. JB15 0 species 1 1933906 0 159 Bartonella sp. 1-1C 515256 1 species Bartonella sp. JB63 247 0 1 species 1933907 129 Bartonella australis 0 1 species 388640 0 225 Bartonella bacilliformis 774 1 species 0 90 Bartonella grahamii 33045 species 1 0 Bartonella vinsonii 150 33047 1 species 0 Bartonella ancashensis 81 1318743 species 1 56426 1 species 0 324 Bartonella clarridgeiae 0 3913 Brucellaceae 118882 85 family 20 1 Ochrobactrum 2078 0 5 genus 35 528 1 Ochrobactrum anthropi 499 0 1 species 529 0 Ochrobactrum sp. A44 531 271865 1 species Ochrobactrum pituitosum 529 0 1 species 571256 1 species 419475 Ochrobactrum pseudogrignonense 484 0 0 1750 Brucella 1 234 654 14 genus 2632610 no rank 4 0 521 0 146 Brucella sp. 09RB8910 1844051 1 species 32 Brucella sp. 2002734562 0 1 species 1891098 1885919 1 species 0 156 Brucella sp. 141012304 1149952 1 species 0 187 Brucella sp. 09RB8471 0 Brucella melitensis 26 29459 species 1 0 77 Brucella pinnipedialis 120576 1 species Brucella ceti 102 0 1 species 120577 49 Brucella abortus 0 1 species 235 27 Brucella microti 0 1 species 444163 236 1 species 0 Brucella ovis 11 29461 1 species 0 Brucella suis 34 1 species 36855 77 Brucella canis 0 981386 1 species 0 172 Brucella vulpis 0 2452 Aurantimonadaceae 255475 3 family 7 1 1 293088 4 genus 29 0 1839 Martelella 1 species 1486262 390 Martelella endophytica 0 species 1 293089 Martelella mediterranea 648 0 0 772 2629616 no rank 1 772 Martelella sp. AD-3 0 1 species 686597 0 Aureimonas 610 414371 4 genus 2 1 no rank 1 2615206 606 0 1349819 1 species 0 Aureimonas sp. AU20 606 family 15 22 119045 1 8210 Methylobacteriaceae 0 Methylobacterium 4313 0 1 9 genus 242 407 0 470 Methylobacterium phyllosphaerae 418223 species 1 species 1 334852 484 Methylobacterium oryzae 0 0 504 Methylobacterium aquaticum 270351 1 species 0 Methylobacterium nodulans 545 114616 species 1 3 no rank 2615210 1479 0 426117 1 species 0 Methylobacterium sp. 4-46 540 429 Methylobacterium sp. C1 0 1 species 1479019 1 species 925818 510 Methylobacterium sp. AMS5 0 0 589 Methylobacterium radiotolerans 31998 1 species 24 2 genus 186650 1 538 Microvirga 0 Microvirga ossetica 514 0 1 species 1882682 3337 0 3 genus 2282523 Methylobacterium extorquens 1848 0 1 species 408 Methylobacterium populi 918 0 1 species 223967 1 species 29429 Methylobacterium zatmanii 571 0 6 family 4 2036754 1 1148 Chelatococcaceae 0 1142 Chelatococcus 0 1 genus 3 31 28209 0 480 Chelatococcus daeguensis 444444 1 species 631 0 1 no rank 2638111 0 631 Chelatococcus sp. CO-6 1702325 1 species Rhizobiaceae 27360 0 1 family 51 174 82115 no rank 10 227292 5412 0 51 genus 3 106591 1 Ensifer 1311 0 0 Ensifer sojae 465 716925 1 species species 1 106592 795 Ensifer adhaerens 0 1 28105 genus 7 32 0 Sinorhizobium 4101 0 576 Sinorhizobium americanum 194963 1 species 0 1146 2613772 2 no rank 481 Sinorhizobium sp. CCBAU 05631 0 species 1 794846 1 species 1842534 665 Sinorhizobium sp. RAC02 0 0 902 Sinorhizobium meliloti 382 species 1 0 996 663276 1 species group 0 Sinorhizobium fredii 996 380 1 species 449 Sinorhizobium medicae 0 species 1 110321 Liberibacter 594 0 2 genus 6 34019 1 34021 species 1 0 139 Candidatus Liberibacter asiaticus 0 89 Liberibacter crescens 1273132 1 species 556287 1 species 0 Candidatus Liberibacter solanacearum 179 0 65 Candidatus Liberibacter americanus 309868 1 species 120 Candidatus Liberibacter africanus 0 1 species 34020 227290 32 no rank 0 20216 genus 7 60 357 1 5306 Agrobacterium 0 species 1 373 Agrobacterium vitis 671 0 2632611 no rank 2 0 821 0 Agrobacterium sp. RAC06 352 1842536 species 1 0 Agrobacterium sp. H13-3 469 861208 1 species 359 species 1 0 624 Agrobacterium rhizogenes species group 2 1183400 3130 0 0 Agrobacterium fabrum 892 1176649 species 1 2238 Agrobacterium tumefaciens 0 1 species 358 1 23 genus 994 379 13810 Rhizobium 0 0 Rhizobium etli 1286 29449 species 1 396 species 1 0 Rhizobium phaseoli 1062 17 no rank 2613769 6127 0 Rhizobium sp. Y9 536 0 1 species 1914541 species 1 1981173 376 Rhizobium sp. NXC14 0 0 97 Rhizobium sp. TAL182 2020313 species 1 Rhizobium sp. N1314 126 0 1 species 1703961 277 Rhizobium sp. NT-26 0 1 species 1125847 1703966 species 1 0 Rhizobium sp. N731 126 0 349 Rhizobium sp. IE4771 1301032 1 species 0 547 Rhizobium sp. N324 1703969 1 species 0 454 Rhizobium sp. S41 1869170 species 1 424182 1 species 0 Rhizobium sp. IRBG74 543 1 species 1703960 Rhizobium sp. N113 7 0 2020312 species 1 0 Rhizobium sp. CIAT894 363 1 species 2048897 612 Rhizobium sp. NXC24 0 527 Rhizobium sp. 10195 0 1 species 2028343 0 Rhizobium sp. N1341 7 1703962 1 species 0 Rhizobium sp. ACO-34A 867 1571470 1 species Rhizobium sp. Kim5 313 0 1 species 2020311 0 3129 Rhizobium leguminosarum 384 1 species 56730 1 species 0 697 Rhizobium gallicum 515 Rhizobium tropici 0 1 species 398 1525371 2 genus 5 1 0 1100 Neorhizobium 1095 Neorhizobium galegae 0 1 species 399 Shinella 964 0 1 78 2 genus 323620 0 886 2643062 no rank 1 1 species 879274 886 Shinella sp. HZN7 0 27 6 family 31993 1 Methylocystaceae 1035 0 1 133 16 genus 3 0 Methylocystis 543 655015 1 species 0 275 Methylocystis bryophila 0 252 2625913 no rank 1 187303 1 species 0 252 Methylocystis sp. SC2 0 Methylosinus 465 1 425 2 genus 6 426 species 1 0 Methylosinus trichosporium 459 748 Beijerinckiaceae 0 1 1 5 family 45404 0 315 Beijerinckia 1 532 3 2 genus 533 1 species 0 312 Beijerinckia indica 1 2 genus 17 120652 Methylocella 432 0 1 species 199596 Methylocella silvestris 415 0 Magnetococcales 305 0 order 2 10 1191478 1 1 family 1191479 295 0 162171 genus 1 0 295 0 Magnetococcus marinus 295 1124597 1 species 1 50 order 32 766 3864 Rickettsiales 0 2380 0 family 25 775 33988 tribe 23 0 2266 1 780 genus 22 171 0 Rickettsia 1967 114295 1 no rank 0 162 162 Rickettsia endosymbiont of Bemisia tabaci 0 1 species 337479 0 964 114277 16 species group 33991 1 species 0 28 Rickettsia montanensis species 1 226665 Rickettsia heilongjiangensis 2 0 0 5 Rickettsia africae 35788 1 species 0 17 Rickettsia conorii 781 1 species species 1 35792 2 Rickettsia parkeri 0 33992 species 1 0 183 Rickettsia rhipicephali 0 Rickettsia rickettsii 10 783 1 species 109232 species 1 0 Rickettsia monacensis 54 1 species 35791 23 Rickettsia massiliae 0 0 228 Rickettsia australis 787 species 1 786 1 species 0 Rickettsia akari 46 6 Rickettsia slovaca 0 1 species 35794 species 1 1105106 6 Rickettsia philipii 0 53 Rickettsia amblyommatis 0 1 species 33989 1 species 42862 205 Rickettsia felis 0 0 96 Rickettsia peacockii 47589 species 1 336 0 2 species group 1129742 233 Rickettsia bellii 0 1 species 33990 788 1 species 0 103 Rickettsia canadensis 2 species group 114292 334 0 1 species 782 Rickettsia prowazekii 155 0 Rickettsia typhi 179 0 1 species 785 299 0 genus 1 69474 784 species 1 0 299 Orientia tsutsugamushi 1 2115980 22 2 genus 0 114 Candidatus Phycorickettsia 2115978 1 species 0 92 Candidatus Phycorickettsia trachydisci 1 no rank 1699067 113 0 1 species 1528098 113 Rickettsiales bacterium Ac37b 0 1 942 family 21 1 0 1289 Anaplasmataceae 768 3 genus 0 190 106179 species group 1 0 131 948 1 species 0 Anaplasma phagocytophilum 131 769 1 species 0 Anaplasma centrale 16 0 Anaplasma marginale 43 770 species 1 952 tribe 8 0 469 0 469 Wolbachia 1 953 8 genus 3 0 466 2640676 no rank 7 1 species 66084 93 Wolbachia sp. wRi 0 0 Wolbachia endosymbiont of Cimex lectularius 45 246273 species 1 26 Wolbachia endosymbiont of Brugia malayi 0 1 species 80849 0 87 Wolbachia endosymbiont of Onchocerca ochengi 100901 1 species 1 species 163164 Wolbachia endosymbiont of Drosophila melanogaster 17 0 0 25 Wolbachia endosymbiont of Onchocerca volvulus 77551 1 species 1 species 77038 173 Wolbachia endosymbiont of Drosophila simulans 0 943 11 genus 6 1 0 Ehrlichia 487 4 species group 106178 411 0 0 71 Ehrlichia chaffeensis 945 species 1 species 1 779 Ehrlichia ruminantium 136 0 40 Ehrlichia muris 0 1 species 35795 164 Ehrlichia canis 0 1 species 944 1 no rank 106181 65 0 species 1 391036 65 Ehrlichia sp. HF 0 142 0 genus 3 33993 33994 1 species 0 37 Neorickettsia helminthoeca 950 1 species 0 90 Neorickettsia risticii 951 species 1 0 Neorickettsia sennetsu 15 1 family 2 2 1328881 Candidatus Midichloriaceae 50 0 48 0 1 genus 411566 Candidatus Midichloria mitochondrii 48 0 1 species 234827 2800059 2 order 0 195 195 0 2 family 2800061 195 Maricaulis 0 3 2 genus 74317 1 0 192 Maricaulis maris 74318 species 1 204441 199 65 order 1 0 Rhodospirillales 27363 433 34 family 182 1 0 Acetobacteraceae 12470 0 Roseomonas 1419 1 125216 3 genus 25 0 Roseomonas gilardii 705 257708 species 1 689 0 no rank 1 2617492 2018065 1 species 0 Roseomonas sp. FDAARGOS_362 689 153497 1 genus 0 374 0 374 Kozakia baliensis 153496 1 species 783 Acidiphilium 0 18 3 genus 522 1 Acidiphilium multivorum 404 0 1 species 62140 1 species 524 361 Acidiphilium cryptum 0 1602345 1 genus 2 1 0 Parasaccharibacter 366 365 Parasaccharibacter apium 0 1 species 1510841 1 2 genus 320496 1 254 Neoasaia 0 1 species 320497 Neoasaia chiangmaiensis 253 0 Asaia 396 0 1 1 2 genus 91914 91915 1 species 0 395 Asaia bogorensis 441 genus 3 33 1 0 1056 Gluconobacter 1 species 442 706 Gluconobacter oxydans 0 1 species 318683 Gluconobacter albidus 317 0 1 52 5 genus 1434011 Komagataeibacter 1616 0 Komagataeibacter xylinus 613 0 1 species 28448 307 Komagataeibacter medellinensis 0 species 1 1177712 0 291 Komagataeibacter nataicola 265960 species 1 0 353 Komagataeibacter europaeus 33995 1 species 1 89583 4 genus 2 0 515 Gluconacetobacter Gluconacetobacter diazotrophicus 511 0 1 species 33996 0 Acetobacter 4486 1 434 107 genus 8 1 species 65959 Acetobacter pomorum 600 0 0 500 Acetobacter tropicalis 104102 species 1 Acetobacter oryzifermentans 372 0 species 1 1633874 446692 1 species 0 492 Acetobacter senegalensis 735 0 subgenus 1 151157 0 Acetobacter aceti 735 435 1 species 1 species 1076596 293 Acetobacter persici 0 0 Acetobacter pasteurianus 1387 438 1 species 1 8 2 genus 364409 Granulibacter 1023 0 1015 Granulibacter bethesdensis 0 1 species 364410 14694 Rhodospirillaceae 0 1 197 family 30 41295 1 12 3 genus 1081 1148 Rhodospirillum 0 Rhodospirillum rubrum 450 0 species 1 1085 34018 species 1 0 686 Rhodospirillum centenum 134 0 1 genus 1263978 Candidatus Endolissoclinum faulkneri 134 0 1 species 1263979 1 1182780 3 2 genus 0 Magnetospira 329 no rank 1 2685734 326 0 Magnetospira sp. QH-2 326 0 1 species 1288970 1543705 5 genus 2 1 0 Nitrospirillum 1192 Nitrospirillum amazonense 1187 0 1 species 28077 0 3212 Magnetospirillum 13134 55 5 genus 1 727 Magnetospirillum magneticum 0 1 species 84159 1060 Magnetospirillum gryphiswaldense 0 species 1 55518 no rank 2 2617991 1370 0 1 species 1639348 Magnetospirillum sp. ME-1 608 0 1663591 species 1 0 Magnetospirillum sp. XM-1 762 768 Niveispirillum 0 2 genus 7 1543704 1 1 species 1612173 761 Niveispirillum cyanobacteriorum 0 1 171436 12 2 genus 0 809 Tistrella 171437 1 species 0 797 Tistrella mobilis Thalassospira 1171 0 1 3 genus 3 168934 0 Thalassospira xiamenensis 537 220697 1 species species 1 2048283 Thalassospira sp. CSC3H3 631 0 0 Haematospirillum 273 1 1804663 2 genus 2 0 271 Haematospirillum jordaniae 1549855 species 1 1 138 5 genus 191 5161 Azospirillum 0 1 species 192 Azospirillum brasilense 1515 0 Azospirillum humicireducens 595 0 1 species 1226968 species 1 528244 Azospirillum thiophilum 1121 0 0 1792 Azospirillum lipoferum 193 species 1 0 300 Pararhodospirillum 1 1612157 3 genus 2 0 297 Pararhodospirillum photometricum 1084 1 species 7869 Caulobacterales 0 27 order 20 204458 1 1 78 19 family 76892 7842 Caulobacteraceae 0 92 7 genus 41275 1 Brevundimonas 2595 0 74313 species 1 0 Brevundimonas subvibrioides 607 2622653 3 no rank 0 1188 species 1 1938605 Brevundimonas sp. LM2 395 0 0 Brevundimonas sp. DS20 388 1532555 1 species 405 Brevundimonas sp. GW460-12-10-14-LB2 0 1 species 1827469 0 Brevundimonas naejangsanensis 357 588932 1 species 41276 1 species 0 351 Brevundimonas vesicularis no rank 1 81440 291 0 291 Caulobacteraceae bacterium OTSz_A_272 0 species 1 1759059 20 2 genus 20 1 620 Phenylobacterium 0 species 1 284016 Phenylobacterium zucineum 600 0 Caulobacter 3813 0 1 6 genus 48 75 1 species 69666 Caulobacter mirabilis 576 0 155892 species 1 0 1148 Caulobacter vibrioides 88688 1 species 0 563 Caulobacter segnis 0 1100 2648921 1 no rank species 1 366602 1100 Caulobacter sp. K31 0 0 378 Caulobacter henricii 69395 species 1 10 2 genus 76890 1 Asticcacaulis 445 0 435 Asticcacaulis excentricus 0 1 species 78587 255473 order 2 0 83 0 83 255474 family 2 83 Parvularcula 0 1 2 genus 3 208215 208216 1 species 0 80 Parvularcula bermudensis 0 1713 82117 no rank 8 0 178 62654 clade 2 Candidatus Puniceispirillum 178 0 genus 2 1 767891 1 0 177 Candidatus Puniceispirillum marinum 767892 1 species 496 Micavibrio 0 1 1 2 genus 213485 349221 1 species 0 Micavibrio aeruginosavorus 495 1632780 10 2 genus 1 0 Phreatobacter 485 475 Phreatobacter sp. S-12 0 1 species 1868589 1 2 genus 1 991903 554 Polymorphum 0 0 553 Polymorphum gilvum 991904 1 species 1 class 10 9 1553900 Oligoflexia 1913 0 1 4 order 2 2024979 Bacteriovoracales 645 0 0 179 1652132 2 family 1652133 genus 2 1 1 0 Halobacteriovorax 179 0 178 Halobacteriovorax marinus 97084 1 species 1 family 263369 464 0 146784 genus 1 0 464 464 Bacteriovorax stolpii 0 1 species 960 1 213481 5 order 14 0 Bdellovibrionales 1259 0 1245 Bdellovibrionaceae 1 213483 4 4 family 1241 Bdellovibrio 0 2 3 genus 958 1 1 species 959 Bdellovibrio bacteriovorus 1079 0 160 Bdellovibrio exovorus 0 1 species 453816 0 920 1807140 class 6 1 6 order 23 225057 920 Acidithiobacillales 0 Acidithiobacillaceae 897 0 family 5 3 225058 1 1 9 genus 4 119977 Acidithiobacillus 894 0 species 1 33059 Acidithiobacillus caldus 261 0 0 358 Acidithiobacillus ferrivorans 160808 1 species 920 1 species 0 Acidithiobacillus ferrooxidans 266 class 4 580370 981 0 1 580371 5 4 order 0 981 Mariprofundales 0 976 Mariprofundaceae 1 580372 2 3 family 0 974 377315 genus 2 species 1 1921087 Mariprofundus ferrinatatus 446 0 1921086 species 1 0 528 Mariprofundus aestuarium 168669 Betaproteobacteria 0 252 class 344 28216 1 119066 11 no rank 0 1053 33055 6 genus 10 1 0 407 Kinetoplastibacterium 994692 1 species 0 77 Candidatus Kinetoplastibacterium desouzaii 994695 1 species 0 133 Candidatus Kinetoplastibacterium galatii 1 species 994696 38 Candidatus Kinetoplastibacterium oncopeltii 0 1 species 233181 Kinetoplastibacterium blastocrithidii 43 0 33056 1 species 0 Candidatus Kinetoplastibacterium crithidii 106 0 41 189384 1 genus 0 41 Candidatus Tremblaya princeps 189385 1 species 1 genus 1381133 111 0 111 Candidatus Profftella armatura 0 1 species 669502 1 4 2 genus 327159 477 Candidatus Accumulibacter 0 1 species 327160 473 Candidatus Accumulibacter phosphatis 0 1 genus 1301080 17 0 Candidatus Nasuia deltocephalinicola 17 0 1 species 1160784 624 0 2 no rank 33809 0 489 Betaproteobacteria bacterium GR16-43 1904640 species 1 543913 1 species 0 135 beta proteobacterium CB 1 80840 order 233 1278 0 Burkholderiales 133227 0 30895 Comamonadaceae 80864 437 family 59 1 Verminephrobacter 648 0 1 genus 2 1 364316 1 species 364317 647 Verminephrobacter eiseniae 0 4369 Delftia 0 1 181 genus 5 80865 Delftia acidovorans 1286 0 1 species 80866 0 1986 2613839 2 no rank 0 971 Delftia sp. HK171 1920191 1 species 0 Delftia sp. Cs1-4 1015 742013 species 1 0 Delftia tsuruhatensis 916 180282 1 species 219181 6 3 genus 1 0 1160 Ottowia 1 species 2109914 634 Ottowia sp. KADR8-3 0 no rank 1 2645081 520 0 1658672 species 1 0 Ottowia sp. oral taxon 894 520 47420 38 4 genus 1 0 Hydrogenophaga 1723 1 species 1763535 Hydrogenophaga crassostreae 401 0 0 1284 2610897 2 no rank 1 species 1842537 466 Hydrogenophaga sp. RAC07 0 1 species 795665 Hydrogenophaga sp. PBC 818 0 1 2 genus 3 352450 Simplicispira 478 0 0 Simplicispira sp. SC1-8 475 2109915 1 species 2678886 genus 1 0 573 573 Melaminivora sp. SC2-7 0 1 species 2116657 5 genus 123 34072 1 Variovorax 4552 0 436515 1 species 0 942 Variovorax boronicumulans Variovorax paradoxus 2299 0 1 species 34073 2 no rank 663243 1188 0 370 Variovorax sp. PAMC 28711 0 1 species 1795631 Variovorax sp. PMC12 818 0 1 species 2126319 1 238749 2 genus 4 0 Diaphorobacter 721 species 1 1546149 717 Diaphorobacter polyhydroxybutyrativorans 0 366 Candidatus Symbiobacter 0 genus 2 4 1436289 1 0 Candidatus Symbiobacter mobilis 362 1436290 1 species Comamonas 3239 0 4 genus 17 283 1 285 1 species 0 1399 Comamonas testosteroni Comamonas kerstersii 918 0 1 species 225992 1082851 species 1 0 Comamonas serinivorans 905 1 8 2 genus 1649468 515 Melaminivora 0 507 0 1 no rank 2641902 species 1 2109913 507 Melaminivora sp. SC2-9 0 0 1140 Ramlibacter 1 174951 genus 2 22 94132 species 1 0 Ramlibacter tataouinensis 1118 1 52972 3 genus 101 0 1218 Polaromonas 216465 1 species 0 721 Polaromonas naphthalenivorans no rank 1 2638319 396 0 0 396 Polaromonas sp. JS666 296591 species 1 0 5577 Acidovorax 12916 287 9 genus 1 Acidovorax sp. NA3 459 0 1 species 553814 80867 1 species 0 Acidovorax avenae 819 2661 0 4 no rank 2684926 711 Acidovorax sp. KKS102 0 species 1 358220 Acidovorax sp. RAC01 712 0 1 species 1842533 0 758 Acidovorax sp. JS42 232721 1 species 480 Acidovorax sp. T1 0 1 species 1858609 1 species 721785 715 Acidovorax ebreus 0 80869 1 species 0 636 Acidovorax citrulli 0 1677 Rhodoferax 28065 5 genus 24 1 Rhodoferax ferrireducens 335 0 1 species 192843 1842727 species 1 0 724 Rhodoferax koreense 358 Rhodoferax saidenbachensis 0 1 species 1484693 81479 1 species 0 Rhodoferax antarcticus 236 686 0 genus 2 2490452 species 1 1458426 Comamonadaceae bacterium B1 287 0 Comamonadaceae bacterium A1 399 0 1 species 1458425 Alicycliphilus 1119 0 4 genus 2 201096 1 Alicycliphilus denitrificans 1115 0 1 species 179636 0 Limnohabitans 697 665874 3 genus 2 1 695 0 no rank 2 2626134 1678129 1 species 0 Limnohabitans sp. 103DPR2 379 0 316 Limnohabitans sp. 63ED37-2 1678128 1 species Burkholderiaceae 52041 0 1 84 family 329 119060 137 genus 12 1822464 1 7133 Paraburkholderia 0 311230 1 species 0 Paraburkholderia terrae 618 134537 1 species 0 Paraburkholderia fungorum 854 1 species 252970 Paraburkholderia phenoliruptrix 725 0 619 Paraburkholderia phymatum 0 1 species 148447 570 Paraburkholderia aromaticivorans 0 1 species 2026199 1 species 261302 Paraburkholderia phytofirmans 502 0 623 Paraburkholderia sprentiae 0 1 species 948107 169430 species 1 0 Paraburkholderia hospita 566 1 species 36873 Paraburkholderia xenovorans 532 0 75105 1 species 0 Paraburkholderia caribensis 773 1 no rank 2615204 614 0 1 species 1926494 Paraburkholderia sp. SOS3 614 0 4370 Pandoraea 0 1 82 10 genus 93217 Pandoraea faecigallinarum 465 0 species 1 656179 0 Pandoraea norimbergensis 511 93219 1 species 0 400 Pandoraea pulmonicola 93221 1 species 1 species 445709 Pandoraea thiooxydans 399 0 656178 1 species 0 449 Pandoraea vervacti 93222 species 1 0 Pandoraea sputorum 439 1 species 93218 Pandoraea apista 506 0 Pandoraea oxalativorans 587 0 1 species 573737 93220 species 1 0 532 Pandoraea pnomenusa 0 26306 Burkholderia 1 32008 1219 genus 41 3705 0 species group 7 111527 57975 1 species 0 911 Burkholderia thailandensis 342113 1 species 0 Burkholderia oklahomensis 453 28450 1 species 0 Burkholderia pseudomallei 943 Burkholderia mallei 301 0 1 species 13373 0 398 Burkholderia sp. MSMB0266 1637837 1 species 334 Burkholderia sp. MSMB617WGS 0 species 1 1637831 1637841 1 species 0 365 Burkholderia sp. MSMB0852 species 1 337 Burkholderia glumae 1091 0 2613784 11 no rank 0 4965 1 species 1468409 Burkholderia sp. 2002721687 357 0 0 Burkholderia sp. YI23 448 1097668 species 1 1 species 416344 Burkholderia sp. KJ006 415 0 0 Burkholderia sp. HB1 600 1678678 1 species Burkholderia sp. PAMC 26561 498 0 1 species 1795043 0 Burkholderia sp. RPE67 501 758796 1 species 0 Burkholderia sp. CCGE1001 386 640510 1 species 1740162 species 1 0 Burkholderia sp. Bp5365 382 0 413 Burkholderia sp. PAMC 28687 1795874 1 species 0 Burkholderia sp. CCGE1003 445 640512 species 1 1 species 1740163 Burkholderia sp. Bp7605 520 0 13612 0 19 species group 87882 Burkholderia ubonensis 1325 0 1 species 101571 1 species 60550 283 Burkholderia pyrrocinia 0 348 Burkholderia latens 0 1 species 488446 0 Burkholderia territorii 256 1503055 1 species 1 species 488731 503 Burkholderia seminalis 0 292 1 species 0 2037 Burkholderia cepacia 408 Burkholderia stagnalis 0 1 species 1503054 0 Burkholderia pseudomultivorans 554 1207504 1 species Burkholderia vietnamiensis 669 0 1 species 60552 152500 species 1 0 389 Burkholderia dolosa 0 Burkholderia contaminans 352 488447 1 species 1 species 482957 603 Burkholderia lata 0 95486 species 1 0 2370 Burkholderia cenocepacia 1 species 265293 419 [Pseudomonas] mesoacidophila 0 0 1115 Burkholderia multivorans 87883 species 1 0 313 Burkholderia diffusa 488732 1 species 0 Burkholderia ambifaria 529 152480 1 species 95485 species 1 0 578 Burkholderia stabilis 488729 species 1 0 Burkholderia metallica 561 28095 1 species 0 Burkholderia gladioli 1027 0 Burkholderia plantarii 687 41899 1 species 4 genus 8 44013 1 Polynucleobacter 807 0 576611 1 species 0 Polynucleobacter asymbioticus 255 1835254 1 species 0 Polynucleobacter duraquae 194 0 Polynucleobacter necessarius 350 576610 1 species 205 0 1 genus 2571159 0 205 Paraburkholderia rhizoxinica 412963 1 species 0 671 1827195 1 genus 758793 1 species 0 671 Burkholderia sp. RPE64 106589 164 9 genus 1 0 7027 Cupriavidus no rank 2 2640874 1745 0 1 species 1389192 Cupriavidus sp. USMAHM13 854 0 1 species 876364 891 Cupriavidus sp. USMAA2-4 0 0 Cupriavidus necator 1074 106590 1 species 0 896 Cupriavidus metallidurans 119219 1 species 935 Cupriavidus sp. USMAA1020 0 1 species 367825 0 Cupriavidus gilardii 467 82541 1 species 0 923 Cupriavidus pinatubonensis 248026 1 species 0 Cupriavidus basilensis 823 68895 1 species 48736 5 genus 118 1 0 Ralstonia 5193 105219 1 species 0 Ralstonia mannitolilytica 832 1 species 305 2284 Ralstonia solanacearum 0 329 species 1 0 1165 Ralstonia pickettii Ralstonia insidiosa 794 0 1 species 190721 1 family 41 163 506 23464 Alcaligenaceae 0 0 Basilea 323 1472344 2 genus 1 1 1472345 1 species 0 Basilea psittacipulmonis 322 genus 1 1100891 288 0 643674 1 species 0 288 Paenalcaligenes hominis 1 genus 2 4 1921582 Orrella 832 0 1 species 1851544 Orrella dioscoreae 828 0 0 136 90243 1 genus 0 Oligella urethralis 136 90245 1 species genus 2 290425 534 0 332 Advenella mimigardefordensis 0 1 species 302406 0 Advenella kashmirensis 202 310575 1 species 29574 genus 3 1 1 0 712 Taylorella 0 170 Taylorella asinigenitalis 84590 1 species 29575 1 species 0 Taylorella equigenitalis 541 Achromobacter 7177 0 6 genus 231 222 1 217204 1 species 0 Achromobacter insolitus 617 934 0 no rank 1 2626865 934 Achromobacter sp. AONIH1 0 1 species 1758194 0 1452 Achromobacter denitrificans 32002 1 species 1220 Achromobacter spanius 0 species 1 217203 1 species 85698 Achromobacter xylosoxidans 2723 0 1 270 17 genus 517 10669 Bordetella 0 Bordetella genomosp. 8 594 0 1 species 1416806 1 species 463040 643 Bordetella genomosp. 13 0 602 0 1 no rank 2630031 1 species 1697043 602 Bordetella sp. H567 0 483 Bordetella petrii 0 1 species 94624 species 1 35814 Bordetella holmesii 286 0 Bordetella hinzii 654 0 1 species 103855 species 1 463025 788 Bordetella bronchialis 0 1 species 463024 731 Bordetella genomosp. 6 0 520 species 1 0 547 Bordetella pertussis 123899 species 1 0 Bordetella trematum 597 1 species 1416803 Bordetella genomosp. 9 606 0 0 Bordetella flabilis 627 463014 species 1 Bordetella bronchiseptica 1478 0 1 species 518 519 1 species 0 Bordetella parapertussis 782 1 species 1331258 628 Bordetella pseudohinzii 0 1 species 521 353 Bordetella avium 0 0 818 Castellaniella 359336 genus 2 16 1 802 Castellaniella defragrans 0 1 species 75697 305976 1 2 genus 1 0 Pusillimonas 433 no rank 1 2640016 432 0 1007105 1 species 0 Pusillimonas sp. T7-7 432 507 2 genus 3 1 0 1379 Alcaligenes Alcaligenes faecalis 1376 0 1 species 511 80841 2 no rank 0 1633 0 Burkholderiales bacterium YL45 1050 1834205 1 species 1 species 1469502 583 Burkholderiales bacterium GJ-E10 0 75682 29 family 114 1 0 Oxalobacteraceae 16901 1 202907 38 genus 4 0 2822 Collimonas 0 1054 Collimonas arenae 279058 1 species 0 Collimonas fungivorans 767 158899 1 species 0 Collimonas pratensis 963 279113 1 species 1 29580 7 genus 30 0 3847 Janthinobacterium 2610881 4 no rank 0 2278 1236179 species 1 0 Janthinobacterium sp. B9-8 358 1938606 1 species 0 Janthinobacterium sp. LM6 701 0 366 Janthinobacterium sp. Marseille 375286 species 1 1 species 1644131 Janthinobacterium sp. 1_2014MBL_MicDiv 853 0 55508 1 species 0 Janthinobacterium agaricidamnosum 718 Janthinobacterium svalbardensis 821 0 species 1 368607 2 genus 2 846 1 757 Oxalobacter 0 Oxalobacter formigenes 755 0 species 1 847 149698 6 genus 92 1 0 Massilia 4322 1 species 2045208 Massilia sp. B2 617 0 1 species 1141883 985 Massilia putida 0 Massilia sp. ZMN-3 938 0 1 species 2072590 0 1690 2609279 2 no rank 1678028 species 1 0 917 Massilia sp. NR 4-1 1 species 1707785 Massilia sp. WG5 773 0 0 Herbaspirillum 4376 963 151 6 genus 1 498 Herbaspirillum hiltneri 0 1 species 341045 80842 1 species 0 Herbaspirillum rubrisubalbicans 989 976 Herbaspirillum frisingense 0 1 species 92645 0 636 2624150 no rank 1 1 species 2025949 636 Herbaspirillum sp. meg3 0 964 1 species 0 Herbaspirillum seropedicae 1126 1 genus 3 2 303379 663 Herminiimonas 0 0 Herminiimonas arsenitoxidans 272 1809410 species 1 1 species 204773 389 Herminiimonas arsenicoxydans 0 7015 0 17 no rank 224471 Mitsuaria 689 0 2 genus 40 65047 1 0 649 2648776 no rank 1 0 Mitsuaria sp. 7 649 1658665 1 species 0 762 Thiomonas 1 32012 2 genus 5 926 1 species 0 Thiomonas intermedia 757 66 2 genus 212743 1 606 Rhizobacter 0 946333 1 species 0 540 Rhizobacter gummiphilus Roseateles 757 0 55 2 genus 93681 1 1 species 76731 Roseateles depolymerans 702 0 1 88 2 genus 18 0 982 Leptothrix 1 species 34029 Leptothrix cholodnii 964 0 Paucibacter 701 0 12 2 genus 318147 1 0 689 2642959 1 no rank Paucibacter sp. KCTC 42545 689 0 1 species 1768242 0 Rubrivivax 914 28067 29 2 genus 1 0 Rubrivivax gelatinosus 885 28068 1 species 0 Methylibium 787 316612 17 2 genus 1 770 Methylibium petroleiphilum 0 1 species 105560 413882 species 1 0 [Polyangium] brachysporum 817 Neisseriales 15341 0 114 order 35 206351 1 0 Neisseriaceae 9353 481 61 21 family 1 335 0 1 genus 71 1 species 72 Simonsiella muelleri 335 0 1193515 1 genus 0 311 311 Snodgrassella alvi 0 1 species 1196083 0 835 Vitreoscilla 1 59 genus 3 7 1 species 63 575 Vitreoscilla filiformis 0 no rank 1 2627922 253 0 Vitreoscilla sp. C1 253 0 1 species 96942 Eikenella 352 0 genus 2 9 538 1 0 Eikenella corrodens 343 539 species 1 482 12 genus 73 1 0 Neisseria 7326 0 385 Neisseria gonorrhoeae 485 1 species 0 Neisseria weaveri 401 28091 species 1 species 1 487 Neisseria meningitidis 1065 0 no rank 2 2623750 1387 0 1 species 655307 954 Neisseria sp. KEM232 0 Neisseria sp. 10022 433 0 1 species 1853276 0 Neisseria elongata 360 495 1 species Neisseria lactamica 544 0 1 species 486 913 Neisseria zoodegmatis 0 1 species 326523 657 Neisseria sicca 0 1 species 490 488 species 1 0 579 Neisseria mucosa 1853278 1 species 0 Neisseria sp. 10023 962 no rank 1 421605 133 0 2052837 1 species 0 Neisseriaceae bacterium DSM 100970 133 Chromobacteriaceae 5874 0 1 13 family 101 1499392 1 168470 2 2 genus 0 Laribacter 752 168471 1 species 0 Laribacter hongkongensis 750 187 2 2 genus 1 0 890 Aquaspirillum 1 no rank 2620219 888 0 Aquaspirillum sp. LM1 888 0 1 species 1938604 1 568394 21 2 genus 0 Pseudogulbenkiania 805 1 no rank 2642558 784 0 748280 1 species 0 Pseudogulbenkiania sp. NH8B 784 0 2639 90153 4 no rank 1 genus 4 83 535 2639 Chromobacterium 0 0 815 Chromobacterium violaceum 536 species 1 0 708 2641838 no rank 1 2059672 1 species 0 708 Chromobacterium sp. ATCC 53434 1108595 1 species 0 Chromobacterium vaccinii 1033 13 2 genus 885864 1 Jeongeupia 687 0 2619593 1 no rank 0 674 1906741 1 species 0 Jeongeupia sp. USM3 674 order 21 78 206389 1 8855 Rhodocyclales 0 371 12 family 2008794 1 Zoogloeaceae 6316 0 2556 Azoarcus 0 5 genus 116 12960 1 0 Azoarcus olearius 487 418699 1 species no rank 2 2629479 1480 0 1 species 748247 840 Azoarcus sp. KH32C 0 Azoarcus sp. CIB 640 0 1 species 198107 1 species 2067960 Azoarcus sp. SY39 473 0 1 104 genus 6 33057 Thauera 3389 0 857 Thauera humireducens 0 1 species 1134435 0 1358 2609274 2 no rank 85643 1 species 0 Thauera sp. MZ1T 673 Thauera sp. K11 685 0 1 species 2005884 573 Thauera aromatica 0 1 species 59405 0 Thauera chlorobenzoica 497 96773 1 species Azonexaceae 561 0 4 2 family 2008795 1 genus 1 73029 557 0 0 557 Dechloromonas aromatica 259537 species 1 75787 6 family 20 1 0 Rhodocyclaceae 1900 75788 no rank 1 0 356 1898103 1 species 0 356 Rhodocyclaceae bacterium 1 146937 9 2 genus 0 938 Azospira 146939 1 species 0 Azospira oryzae 929 Aromatoleum 586 0 1 19 genus 2 551759 0 567 Aromatoleum aromaticum 551760 1 species 1 32003 36 41 order 0 9317 Nitrosomonadales 1 family 12 4 206379 2823 Nitrosomonadaceae 0 0 1027 Nitrosospira 35798 4 genus 13 1 0 Nitrosospira multiformis 341 1231 1 species 0 Nitrosospira lacus 236 1288494 species 1 0 437 Nitrosospira briensis 35799 1 species Nitrosomonas 1792 0 7 7 genus 914 1 0 405 2609265 2 no rank Nitrosomonas sp. AL212 149 0 1 species 153948 261292 species 1 0 256 Nitrosomonas sp. Is79A3 427 Nitrosomonas ureae 0 1 species 44577 1 species 915 288 Nitrosomonas europaea 0 1 species 44574 Nitrosomonas communis 512 0 1 species 916 153 Nitrosomonas eutropha 0 90627 19 family 4 1 0 Gallionellaceae 896 genus 1 314343 599 0 0 599 Sideroxydans lithotrophicus 63745 1 species 1 96 genus 2 1 0 278 Gallionella 370405 species 1 0 Gallionella capsiferriformans 277 1 2008790 12 family 3 0 Thiobacillaceae 422 919 2 genus 4 1 0 410 Thiobacillus 36861 1 species 0 406 Thiobacillus denitrificans 920 0 family 4 2772226 0 415 Sulfuricella 1 935200 4 genus 2 649841 species 1 0 411 Sulfuricella denitrificans 0 505 Sulfuriferula 1778653 2 genus 2 1 0 503 2637784 no rank 1 1985873 species 1 0 Sulfuriferula sp. AH1 503 1 27 family 5 2008793 Sterolibacteriaceae 1352 0 378210 2 genus 10 1 0 556 Methyloversatilis 546 0 no rank 1 2639971 1 species 1842540 546 Methyloversatilis sp. RAC08 0 0 769 Sulfuritalea 1054211 genus 2 19 1 1 species 748811 750 Sulfuritalea hydrogenivorans 0 Methylophilaceae 2868 0 1 12 12 family 32011 genus 1 16 333 0 1 no rank 2630143 333 0 0 Methylophilus sp. TWE2 333 1662285 species 1 0 342 404 1 genus 405 species 1 0 342 Methylobacillus flagellatus 0 Methylovorus 1038 1 81682 genus 3 18 0 Methylovorus glucosotrophus 537 266009 1 species 483 0 no rank 1 2634027 483 Methylovorus sp. MP688 0 species 1 887061 1 359407 4 3 genus 0 Methylotenera 625 327 Methylotenera mobilis 0 1 species 359408 0 294 Methylotenera versatilis 1055487 1 species 518 Candidatus Methylopumilus 0 1 1 genus 3 1679002 1581680 1 species 0 210 Candidatus Methylopumilus turicensis 1 species 1581557 Candidatus Methylopumilus planktonicus 307 0 190 subphylum 68525 87013 0 0 Deltaproteobacteria 58081 28221 121 class 102 1 1 213118 13 order 17 0 5200 Desulfobacterales 8 family 30 213119 1 Desulfobacteraceae 2757 0 2295 1 genus 0 449 1 species 2296 449 Desulfobacterium autotrophicum 0 1 genus 218207 742 0 0 Desulfatibacillum alkenivorans 742 259354 1 species 0 Desulfobacula 562 28222 1 2 genus 1 Desulfobacula toluolica 561 0 1 species 28223 genus 3 5 896 1 974 Desulfococcus 0 Desulfococcus multivorans 517 0 species 1 897 181663 1 species 0 452 Desulfococcus oleovorans 213121 9 8 family 1 0 Desulfobulbaceae 2430 0 284 Desulfotalea 1 109168 1 2 genus 283 Desulfotalea psychrophila 0 1 species 84980 893 1 genus 0 1150 1986146 1 species 0 Desulfobulbus sp. ORNL 1150 0 Desulfurivibrio 640 1 427922 4 2 genus species 1 427923 Desulfurivibrio alkaliphilus 636 0 0 347 Desulfocapsa 1 53318 1 2 genus 0 Desulfocapsa sulfexigens 346 65555 1 species 0 Desulfurellales 769 213113 5 order 7 1 family 4 117942 762 0 1 3 2 genus 33001 Desulfurella 365 0 1 species 33002 362 Desulfurella acetivorans 0 1 2 genus 1 84404 397 Hippea 0 84405 species 1 0 396 Hippea maritima 1 112 24 order 213115 Desulfovibrionales 18945 0 0 Desulfomicrobiaceae 1818 1 213116 4 family 28 0 Desulfomicrobium 1790 898 genus 3 5 1 899 1 species 0 Desulfomicrobium baculatum 939 Desulfomicrobium orale 846 0 1 species 132132 Desulfohalobiaceae 255 0 4 family 2 213117 1 genus 1 45662 251 0 species 1 45663 251 Desulfohalobium retbaense 0 1 71 family 17 194924 16760 Desulfovibrionaceae 0 683 0 genus 1 2794998 Desulfovibrio salexigens 683 0 1 species 880 0 11812 Desulfovibrio 872 82 9 genus 1 876 1 species 0 2138 Desulfovibrio desulfuricans 0 Desulfovibrio magneticus 958 184917 species 1 781 0 1 no rank 2593640 0 781 Desulfovibrio sp. G11 631220 1 species 0 1653 Desulfovibrio fairfieldensis 44742 1 species 901 1 species 0 2182 Desulfovibrio piger 1 species 881 Desulfovibrio vulgaris 3045 0 0 326 Candidatus Desulfovibrio trichonymphae 1725232 species 1 0 Desulfovibrio alaskensis 647 58180 1 species 2582840 genus 1 0 887 1 species 873 887 Desulfovibrio africanus 0 0 3030 Pseudodesulfovibrio 1 2035811 7 4 genus 0 684 Pseudodesulfovibrio profundus 57320 species 1 Pseudodesulfovibrio indicus 1316 0 1 species 1716143 Pseudodesulfovibrio aespoeensis 1023 0 1 species 182210 1 genus 41707 277 0 0 Lawsonia intracellularis 277 29546 1 species 1 order 10 14 213462 Syntrophobacterales 1617 0 1 213465 family 3 7 0 469 Syntrophobacteraceae 1 29526 2 genus 2 0 Syntrophobacter 462 0 460 Syntrophobacter fumaroxidans 119484 species 1 Syntrophaceae 1134 0 1 6 family 2 213468 1 43773 1 2 genus 0 342 Syntrophus 316277 1 species 0 Syntrophus aciditrophicus 341 2357 genus 1 0 343 2358 1 species 0 Desulfomonile tiedjei 343 1 60892 1 2 genus 0 Desulfobacca 447 60893 1 species 0 446 Desulfobacca acetoxidans 1 453227 12 4 order 0 931 Desulfarculales 919 Desulfarculaceae 0 3 family 11 453228 1 0 Desulfarculus 908 1 453229 2 genus 2 1 species 453230 Desulfarculus baarsii 906 0 0 Myxococcales 17950 1 29 157 order 37 3 suborder 224462 862 0 224464 4 family 3 1 0 Kofleriaceae 862 2 genus 5 162027 1 858 Haliangium 0 0 Haliangium ochraceum 853 80816 1 species 0 13428 80811 26 suborder 1 9 family 57 39 Archangiaceae 3595 0 1 47 12 genus 2 0 984 Archangium 0 Archangium gephyra 972 48 1 species 0 872 Cystobacter 1 42 2 genus 8 43 1 species 0 Cystobacter fuscus 864 843 Stigmatella 0 1 6 2 genus 40 Stigmatella aurantiaca 837 0 1 species 41 0 Melittangium 839 44 2 genus 12 1 83453 species 1 0 827 Melittangium boletus 9 family 21 31 1 Myxococcaceae 6024 0 4079 Myxococcus 0 1 5 genus 116 32 Myxococcus xanthus 828 0 species 1 34 0 709 Myxococcus stipitatus 83455 1 species 0 949 Myxococcus hansupus 1297742 1 species 1 species 33 Myxococcus fulvus 1477 0 0 1924 Corallococcus 1 83461 31 genus 3 1 species 184914 Corallococcus coralloides 1055 0 35 1 species 0 838 Myxococcus macrosporus family 3 5 1524213 1 703 Vulgatibacteraceae 0 1 1524214 12 genus 2 0 Vulgatibacter 698 0 Vulgatibacter incomptus 686 1391653 1 species 15 family 5 1524215 1 3106 Anaeromyxobacteraceae 0 1 161492 4 genus 35 0 Anaeromyxobacter 3091 0 Anaeromyxobacter dehalogenans 1374 161493 species 1 2620896 no rank 2 0 1682 1 species 404589 761 Anaeromyxobacter sp. Fw109-5 0 447217 1 species 0 921 Anaeromyxobacter sp. K 0 3503 80812 suborder 7 756 Sandaracinaceae 0 1 family 3 15 1055686 Sandaracinus 741 0 5 2 genus 1055688 1 927083 species 1 0 736 Sandaracinus amylolyticus 2747 Polyangiaceae 0 18 4 family 49 1 genus 1 50 449 0 0 Chondromyces crocatus 449 52 species 1 Sorangium 2280 0 1 24 2 genus 39643 0 2256 Sorangium cellulosum 56 1 species 69541 order 23 110 1 0 Desulfuromonadales 12567 3781 Desulfuromonadaceae 0 family 9 42 213421 1 1 11 3 genus 890 Desulfuromonas 1255 0 2614637 no rank 1 0 648 0 648 Desulfuromonas sp. DDH964 1823759 1 species 1603606 1 species 0 596 Desulfuromonas soudanensis 18 5 genus 3 1 0 2484 Pelobacter 586 Pelobacter propionicus 0 1 species 29543 species 1 29542 457 Pelobacter acetylenicus 0 874 Pelobacter carbinolicus 0 species 1 19 0 564 2620299 no rank 1 1 species 1842532 564 Pelobacter sp. SFB93 0 0 8676 Geobacteraceae 213422 family 13 34 1 630 0 genus 1 392332 0 630 Geoalkalibacter subterraneus 483547 1 species 28231 11 genus 136 1 0 Geobacter 8012 1 species 35554 638 Geobacter sulfurreducens 0 0 748 Geobacter metallireducens 28232 1 species Geobacter pickeringii 797 0 1 species 345632 686 Geobacter daltonii 0 species 1 1203471 225194 1 species 0 857 Geobacter bemidjiensis 0 541 Geobacter uraniireducens 351604 species 1 2 no rank 2627627 2177 0 0 831 Geobacter sp. M21 443144 species 1 1346 Geobacter sp. M18 0 1 species 443143 1 species 313985 Geobacter lovleyi 825 0 species 1 1340425 Geobacter anodireducens 607 0 1 class 69 11 29547 28932 Epsilonproteobacteria 0 644 0 3 order 235899 224467 2 family 0 497 191291 3 2 genus 1 0 Nautilia 497 Nautilia profundicola 494 0 species 1 244787 0 147 2795691 family 1 269258 genus 1 0 147 2624044 1 no rank 0 147 1 species 387092 Nitratiruptor sp. SB155-2 147 0 0 28277 Campylobacterales 1 213849 220 order 65 0 22287 Campylobacteraceae 72294 756 family 41 1 5 no rank 2321108 2449 0 genus 1 2321187 709 0 1850254 1 species 0 709 Arcobacter sp. LPB0137 2321207 no rank 1 0 552 Arcobacter sp. L 552 0 species 1 944547 1 25 genus 3 28196 1188 Arcobacter 0 28199 1 species 0 543 Arcobacter nitrofigilis 0 620 Arcobacter butzleri 28197 species 1 26 genus 132 194 1 Campylobacter 17208 0 1244531 1 species 0 187 Campylobacter iguaniorum 2593542 4 no rank 0 1058 234 Campylobacter sp. RM16704 0 1 species 1500960 1660074 1 species 0 Campylobacter sp. RM8964 321 250 Campylobacter sp. RM12175 0 species 1 1660076 1660073 1 species 0 253 Campylobacter sp. RM6137 1 species 1965231 267 Campylobacter pinnipediorum 0 195 1 species 0 8339 Campylobacter coli 0 288 Campylobacter hominis 76517 1 species 389 Campylobacter fetus 0 1 species 196 497724 1 species 0 Campylobacter subantarcticus 283 198 species 1 0 248 Campylobacter hyointestinalis species 1 201 Campylobacter lari 629 0 1 species 206 481 Campylobacter sputorum 0 824 1 species 0 264 Campylobacter gracilis 0 414 Campylobacter cuniculorum 374106 1 species 827 1 species 0 318 Campylobacter ureolyticus species 1 488546 Campylobacter peloridis 225 0 28898 1 species 0 Campylobacter helveticus 93 0 178 Campylobacter insulaenigrae 260714 1 species 1031542 1 species 0 251 Campylobacter volucris 0 Campylobacter concisus 509 199 species 1 199 Campylobacter avium 0 species 1 522485 0 1824 Campylobacter jejuni 197 1 species 0 339 Campylobacter curvus 200 1 species 1 species 75658 293 Campylobacter lanienae 0 57665 3 genus 9 1 0 Sulfurospirillum 1874 0 141 Sulfurospirillum multivorans 66821 1 species 260 Sulfurospirillum barnesii 0 1 species 44674 Sulfurospirillum deleyianum 162 0 1 species 65553 0 275 Sulfurospirillum halorespirans 194424 species 1 861 0 3 no rank 2618290 220622 species 1 0 Sulfurospirillum sp. JPD-1 307 Sulfurospirillum sp. UCH001 371 0 1 species 1581011 0 Sulfurospirillum sp. SL2-1 183 1986224 1 species 0 172 Sulfurospirillum cavolei 366522 species 1 Helicobacteraceae 3346 0 14 family 5 72293 1 843 genus 1 0 155 155 Wolinella succinogenes 0 1 species 844 0 3186 Helicobacter 209 7 12 genus 1 0 Helicobacter acinonychis 81 212 1 species 0 168 Helicobacter bilis 37372 1 species 2593540 no rank 1 0 81 Helicobacter sp. MIT 01-6242 81 0 1 species 222136 214 1 species 0 Helicobacter felis 126 0 Helicobacter cinaedi 100 213 1 species 1 species 210 1226 Helicobacter pylori 0 0 Helicobacter hepaticus 303 32025 species 1 0 278 Helicobacter cetorum 138563 1 species 0 Helicobacter himalayensis 95 1591088 species 1 0 Helicobacter typhlonius 467 76936 species 1 254 Helicobacter mustelae 0 1 species 217 5 family 2771472 1415 0 269260 2 genus 1 1 0 Nitratifractor 511 1 species 269261 510 Nitratifractor salsuginis 0 1 265570 3 genus 1 0 Sulfurovum 904 206403 species 1 0 529 Sulfurovum lithotrophicum 0 374 2646778 1 no rank 0 Sulfurovum sp. NBC37-1 374 387093 1 species 4 family 2771471 1009 0 202746 2 genus 0 447 species 1 39766 190 Sulfurimonas denitrificans 0 0 Sulfurimonas autotrophica 257 202747 1 species 2 genus 2 286130 1 Sulfuricurvum 562 0 148813 1 species 0 Sulfuricurvum kujiense 560 Gammaproteobacteria 392654 0 851 class 626 1236 1 0 Legionellales 4217 1 118969 14 order 20 1 118968 2 4 family 0 206 Coxiellaceae 0 53 134284 no rank 1 0 53 Coxiella-like endosymbiont 1592897 1 species 151 0 genus 2 776 2676648 1 no rank 0 23 Coxiella endosymbiont of Amblyomma americanum 23 0 species 1 325775 0 128 Coxiella burnetii 777 1 species 1 15 family 444 1 3997 Legionellaceae 0 0 Tatlockia 153 1 465 1 genus 2 451 1 species 0 Tatlockia micdadei 152 1 12 genus 445 1 Legionella 3843 0 381 Legionella clemsonensis 0 1 species 1867846 449 species 1 0 257 Legionella hackeliae 0 Legionella longbeachae 358 450 1 species Legionella sainthelensi 489 0 1 species 28087 0 152 Legionella fallonii 96230 1 species 1 species 66969 185 Legionella waltersii 0 76 Legionella lansingensis 0 species 1 45067 446 1 species 0 1261 Legionella pneumophila 2005262 1 species 0 55 Legionella endosymbiont of Polyplax serrata 0 Legionella spiritensis 428 452 1 species 29423 1 species 0 200 Legionella oakridgensis 33811 no rank 2 0 956 0 259 gamma proteobacterium HdN1 83406 species 1 0 endosymbiont of unidentified scaly snail isolate Monju 697 1248727 1 species 1934945 1 order 4 1 0 Immundisolibacterales 553 1 1934946 3 family 3 0 552 Immundisolibacteraceae 0 549 Immundisolibacter 1 1934947 genus 2 4 1810504 1 species 0 545 Immundisolibacter cernigliae 2000 0 10 no rank 118884 0 321 655184 2 genus 1427364 species 1 0 170 Candidatus Thioglobus singularis species 1 1705394 151 Candidatus Thioglobus autotrophicus 0 genus 1 349742 402 0 1543721 1 species 0 Sedimenticola thiotaurini 402 253 Thiolapillus 0 1 21 genus 2 1608298 1076588 1 species 0 232 Thiolapillus brandeum clade 3 32036 387 0 0 109 1541743 1 genus 386487 1 species 0 109 Candidatus Ruthia magnifica 113267 1 species 0 Bathymodiolus septemdierum thioautotrophic gill symbiont 195 83 Calyptogena okutanii thioautotrophic gill symbiont 0 1 species 410330 1 clade 198346 207 0 Candidatus Baumannia cicadellinicola 207 0 1 species 186490 1524249 genus 1 0 430 Pseudohongiella spirulinae 430 0 1 species 1249552 0 26541 Xanthomonadales 1 135614 207 54 order 1775411 215 14 family 1 0 4537 Rhodanobacteraceae Rhodanobacter 658 0 1 20 2 genus 75309 species 1 666685 Rhodanobacter denitrificans 638 0 1 4 genus 31 231454 Dyella 1995 0 Dyella jiangningensis 552 0 1 species 1379159 1 species 445710 565 Dyella thiooxydans 0 231455 1 species 0 847 Dyella japonica 11 2 genus 242605 1 425 Luteibacter 0 1 species 242606 414 Luteibacter rhizovicinus 0 0 278 2233801 1 genus 0 278 Xanthomonadales bacterium D13 2021234 1 species 0 619 Dokdonella 323413 2 genus 5 1 1 species 323415 Dokdonella koreensis 614 0 70411 6 genus 2 1 0 347 Frateuria species 1 81475 Frateuria aurantia 341 0 0 Xanthomonadaceae 21797 1 32033 family 39 198 465 17 genus 338 1 Xanthomonas 9308 0 0 Xanthomonas perforans 522 442694 1 species Xanthomonas fragariae 180 0 1 species 48664 1 species 339 1263 Xanthomonas campestris 0 56459 1 species 0 Xanthomonas vasicola 365 56454 1 species 0 Xanthomonas hortorum 318 0 Xanthomonas vesicatoria 357 56460 1 species 53413 1 species 0 Xanthomonas axonopodis 370 879 Xanthomonas oryzae 0 1 species 347 29447 species 1 0 365 Xanthomonas albilineans 483 Xanthomonas euvesicatoria 0 1 species 456327 0 1839 643453 2 species group 366648 species 1 0 485 Xanthomonas fuscans 346 1 species 0 1354 Xanthomonas citri 56458 species 1 0 Xanthomonas sacchari 536 0 Xanthomonas phaseoli 318 1985254 1 species 366650 species 1 0 341 Xanthomonas alfalfae 0 707 Xanthomonas translucens 343 species 1 1 2370 1 2 genus 0 325 Xylella Xylella fastidiosa 324 0 1 species 2371 Luteimonas 357 0 2 genus 1 83614 1 0 356 Luteimonas sp. 100111 2006110 species 1 0 Pseudoxanthomonas 1454 1 83618 51 3 genus species 1 314722 Pseudoxanthomonas suwonensis 994 0 0 409 Pseudoxanthomonas spadix 415229 1 species 68 5 genus 30 1 0 Lysobacter 3070 683 Lysobacter gummosus 0 1 species 262324 0 793 Lysobacter enzymogenes 69 1 species 435897 1 species 0 Lysobacter capsici 874 1 species 84531 Lysobacter antibioticus 690 0 0 7085 Stenotrophomonas 1 40323 9 genus 127 3350 0 species group 1 995085 0 Stenotrophomonas maltophilia 3350 40324 1 species 83617 1 species 0 491 Stenotrophomonas nitritireducens 0 1817 196198 no rank 4 1 species 1793721 Stenotrophomonas sp. KCTC 12332 499 0 Stenotrophomonas sp. LM091 451 0 1 species 1904944 461 Stenotrophomonas sp. WZN-1 0 1 species 2005046 0 406 Stenotrophomonas sp. MYb57 1827305 1 species Stenotrophomonas acidaminiphila 858 0 1 species 128780 442 Stenotrophomonas rhizophila 0 1 species 216778 13 order 43 135623 1 17062 Vibrionales 0 Vibrionaceae 17049 0 1 58 42 family 641 0 Vibrio 13923 662 164 genus 30 1 species 1 674 489 Vibrio mimicus 0 0 5592 717610 10 species group 691 1 species 0 950 Vibrio natriegens species 1 663 931 Vibrio alginolyticus 0 Vibrio owensii 654 0 1 species 696485 601 Vibrio campbellii 0 1 species 680 0 Vibrio rotiferianus 188 190895 1 species 0 893 Vibrio parahaemolyticus 670 1 species 2 species subgroup 2315253 588 0 150340 species 1 0 117 Vibrio antiquarius Vibrio diabolicus 471 0 1 species 50719 225 Vibrio jasicida 0 1 species 766224 1 species 669 562 Vibrio harveyi 0 species group 1 1891919 200 0 29498 species 1 0 200 Vibrio tubiashii Vibrio qinghaiensis 233 0 1 species 2025808 0 212 Vibrio hyugaensis 1534743 species 1 357 Vibrio tapetis 0 1 species 52443 Vibrio scophthalmi 228 0 1 species 45658 28173 1 species 0 383 Vibrio nigripulchritudo Vibrio tasmaniensis 162 0 1 species 212663 1291 Vibrio vulnificus 0 1 species 672 0 215 Vibrio gazogenes 687 1 species 0 1016 Vibrio fluvialis 676 1 species 1435069 1 species 0 487 Vibrio tritonius 0 618 2614977 2 no rank 0 Vibrio sp. EJY3 407 1116375 1 species species 1 2014742 Vibrio sp. 2521-89 211 0 0 Vibrio furnissii 277 29494 1 species species 1 55601 491 Vibrio anguillarum 0 species 1 553239 134 Vibrio breoganii 0 species 1 190893 778 Vibrio coralliilyticus 0 0 596 Vibrio cholerae 666 1 species 0 251 2042066 genus 1 Paraphotobacterium marinum 251 0 species 1 1755811 2 genus 2 246861 1 312 Grimontia 0 0 Grimontia hollisae 310 673 1 species Aliivibrio 984 0 1 4 genus 13 511678 1 species 80852 300 Aliivibrio wodanis 0 40269 species 1 0 206 Aliivibrio salmonicida 1 species 668 465 Aliivibrio fischeri 0 1521 Photobacterium 0 4 4 genus 657 1 1 species 38293 475 Photobacterium damselae 0 Photobacterium profundum 582 0 1 species 74109 1295392 1 species 0 460 Photobacterium gaetbulicola 27697 Alteromonadales 0 1 69 102 order 135622 2 family 267894 364 0 genus 2 67572 364 0 125 0 no rank 1 2614957 314282 1 species 0 Psychromonas sp. CNPT3 125 1 species 357794 Psychromonas ingrahamii 239 0 Shewanellaceae 7262 0 1 12 family 25 267890 22 24 genus 58 1 0 Shewanella 7250 192073 1 species 0 Shewanella denitrificans 212 Shewanella piezotolerans 159 0 species 1 404011 0 Shewanella halifaxensis 197 271098 1 species 2018305 species 1 0 213 Shewanella bicestrii 6 no rank 196818 1537 0 1 species 2029986 153 Shewanella sp. WE21 0 60481 species 1 0 224 Shewanella sp. MR-7 60480 1 species 0 Shewanella sp. MR-4 222 249 Shewanella sp. W3-18-1 0 1 species 351745 0 Shewanella sp. Pdp11 281 2059264 species 1 94122 1 species 0 408 Shewanella sp. ANA-3 Shewanella amazonensis 613 0 1 species 60478 1 species 56812 Shewanella frigidimarina 433 0 0 Shewanella oneidensis 415 70863 1 species 225848 1 species 0 237 Shewanella psychrophila 1 species 260364 380 Shewanella marisflavi 0 222 Shewanella pealeana 0 1 species 70864 Shewanella japonica 234 0 1 species 93973 0 Shewanella sediminis 377 271097 species 1 0 487 Shewanella woodyi 60961 1 species 0 395 Shewanella loihica 359303 1 species 0 571 Shewanella baltica 62322 1 species 24 1 species 0 Shewanella putrefaciens 232 278 Shewanella violacea 0 1 species 60217 1 3 family 3 267891 370 Moritellaceae 0 0 367 Moritella 1 58050 2 genus 8 species 1 80854 Moritella viscosa 359 0 17 family 25 267888 1 7923 Pseudoalteromonadaceae 0 121 genus 24 53246 1 Pseudoalteromonas 7906 0 0 284 Pseudoalteromonas nigrifaciens 28109 1 species 432 Pseudoalteromonas piratica 0 1 species 1348114 0 542 Pseudoalteromonas aliena 247523 1 species species 1 166935 Pseudoalteromonas translucida 290 0 0 207 Pseudoalteromonas phenolica 161398 1 species 1 species 288 400 Pseudoalteromonas atlantica 0 298657 1 species 0 Pseudoalteromonas spongiae 743 1 species 43657 484 Pseudoalteromonas luteoviolacea 0 0 Pseudoalteromonas haloplanktis 230 228 species 1 0 208 Pseudoalteromonas issachenkonii 152297 species 1 Pseudoalteromonas agarivorans 247 0 1 species 176102 1 species 314281 Pseudoalteromonas tunicata 294 0 1845 0 5 no rank 194690 0 Pseudoalteromonas sp. NC201 376 1514074 1 species 234831 1 species 0 Pseudoalteromonas sp. SM9913 208 0 442 Pseudoalteromonas sp. Bsw20308 283699 species 1 317 Pseudoalteromonas sp. 13-15 0 species 1 1761891 0 502 Pseudoalteromonas sp. 1_2015MBL_MicDiv 1720343 1 species species 1 43658 Pseudoalteromonas rubra 359 0 0 Pseudoalteromonas piscicida 260 43662 1 species 28107 1 species 0 151 Pseudoalteromonas espejiana Pseudoalteromonas arctica 284 0 1 species 394751 1 species 43659 Pseudoalteromonas tetraodonis 244 0 0 Pseudoalteromonas marina 281 267375 1 species 267893 family 6 12 1 0 Idiomarinaceae 754 1 genus 5 4 135575 Idiomarina 742 0 248 Idiomarina piscisalsi 0 1 species 1096243 184 Idiomarina loihiensis 0 1 species 135577 306 0 2 no rank 2614829 132 Idiomarina sp. X4 0 1 species 2055892 0 174 Idiomarina sp. OT37-5b 2100422 1 species 1 21 28 family 72275 9395 Alteromonadaceae 0 genus 2 89404 572 0 0 Glaciecola nitratireducens 330 300231 species 1 no rank 1 2618684 242 0 1 species 983545 Glaciecola sp. 4H-3-7+YE-5 242 0 0 237 Agarivorans 1 261825 22 genus 2 0 215 Agarivorans gilvus 680279 1 species 1 4 10 genus 226 3069 Alteromonas 0 1 species 233316 Alteromonas stellipolaris 241 0 164 Alteromonas australica 0 species 1 589873 0 Alteromonas addita 204 287094 1 species 0 369 Alteromonas naphthalenivorans 715451 1 species 2614992 no rank 3 0 553 1777491 species 1 0 212 Alteromonas sp. Mac1 160 Alteromonas sp. MB-3u-76 0 species 1 2058133 1917158 1 species 0 181 Alteromonas sp. RW2A1 0 983 Alteromonas macleodii 28108 1 species 0 551 Alteromonas mediterranea 314275 1 species 4345 Marinobacter 0 1 10 genus 75 2742 1 species 1420916 Marinobacter similis 495 0 634 Marinobacter salarius 0 species 1 1420917 0 325 Marinobacter salinus 1874317 species 1 369 Marinobacter adhaerens 0 species 1 1033846 1 species 2743 1029 Marinobacter hydrocarbonoclasticus 0 1208 0 3 no rank 83889 490759 1 species 0 198 Marinobacter sp. BSs20148 0 321 Marinobacter sp. CP1 1671721 1 species 1 species 1749259 689 Marinobacter sp. LQ44 0 1 species 330734 210 Marinobacter psychrophilus 0 700 Lacimicrobium 0 2 genus 4 1751872 1 species 1 1526571 Lacimicrobium alkaliphilum 696 0 0 451 1621534 genus 1 451 Paraglaciecola psychrophila 0 species 1 326544 Colwelliaceae 1086 0 family 9 1 267889 1 95 Thalassotalea 0 1 1 2 genus 1518149 1763536 1 species 0 94 Thalassotalea crassostreae 28228 6 genus 2 1 0 990 Colwellia 1 species 28229 Colwellia psychrerythraea 197 0 196834 no rank 3 0 643 Colwellia sp. MT41 300 0 1 species 58049 1 species 1816218 Colwellia sp. PAMC 20917 199 0 Colwellia sp. PAMC 21821 144 0 1 species 1816219 0 148 Colwellia beringensis 1967665 1 species 0 474 Ferrimonadaceae 267892 3 family 1 1 Ferrimonas 473 0 30 genus 2 44011 1 44012 1 species 0 443 Ferrimonas balearica Cellvibrionales 5654 0 order 24 13 1706369 1 1706372 family 4 1 1 0 Halieaceae 763 1217416 genus 3 9 1 0 762 Halioglobus 437 Halioglobus japonicus 0 1 species 930805 1 species 930806 Halioglobus pacificus 316 0 Spongiibacteraceae 674 0 2 4 family 1706375 1 genus 1 630749 133 0 no rank 1 2631504 133 0 Spongiibacter sp. IMCC21906 133 0 species 1 1620392 1 genus 1084558 305 0 716816 1 species 0 305 Oceanicoccus sagamiensis 234 0 genus 1 1434050 234 Zhongshania aliphaticivorans 0 1 species 1470434 1 10 family 5 1706371 3046 Cellvibrionaceae 0 2 genus 67 447467 1 462 Simiduia 0 0 395 Simiduia agarivorans 447471 1 species 0 Cellvibrio 1601 1 10 7 genus 4 1 species 155077 Cellvibrio japonicus 615 0 979 0 2 no rank 2624793 1 species 1945512 Cellvibrio sp. PSBB023 327 0 0 652 Cellvibrio sp. PSBB006 1987723 1 species 316625 genus 1 0 432 Saccharophagus degradans 432 0 1 species 86304 2425 genus 1 0 253 253 Teredinibacter turnerae 0 1 species 2426 0 293 2036021 1 genus 293 Agarilytica rhodophyticola 0 1 species 1737490 0 1158 Microbulbiferaceae 1706373 1 family 5 1 0 Microbulbifer 1157 1 48073 8 genus 4 1 species 260552 Microbulbifer agarilyticus 370 0 252514 species 1 0 Microbulbifer thermotolerans 324 0 455 Microbulbifer aggregans 1769779 1 species 710 0 order 3 1240482 0 710 1240483 family 3 425 Gilliamella 0 genus 2 1 1193503 1 424 Gilliamella apicola 0 1 species 1196095 0 285 1335631 genus 1 0 Frischella perrara 285 1267021 1 species Pasteurellales 10839 0 4 order 28 135625 1 Pasteurellaceae 10835 0 1 family 27 101 712 1 713 genus 5 1 0 Actinobacillus 1675 448 Actinobacillus succinogenes 0 1 species 67854 1 species 718 261 Actinobacillus equuli 0 0 Actinobacillus pleuropneumoniae 634 715 1 species 0 331 Actinobacillus suis 716 1 species 0 307 2094023 genus 1 1 species 738 307 Glaesserella parasuis 0 697331 genus 1 0 649 0 [Mannheimia] succiniciproducens 649 157673 1 species 416916 3 genus 8 1 0 Aggregatibacter 1140 715 Aggregatibacter aphrophilus 0 species 1 732 1 species 714 Aggregatibacter actinomycetemcomitans 417 0 1 724 45 6 genus 0 Haemophilus 3834 0 262 Haemophilus pittmaniae 249188 1 species Haemophilus parainfluenzae 2179 0 species 1 729 257 0 no rank 1 2609962 712310 species 1 0 257 Haemophilus sp. oral taxon 036 730 species 1 0 93 [Haemophilus] ducreyi Haemophilus influenzae 998 0 1 species 727 214906 1 genus 0 424 424 Histophilus somni 0 species 1 731 1 3 genus 1 745 Pasteurella 713 0 species 1 754 295 Pasteurella dagmatis 0 1 species 747 Pasteurella multocida 417 0 0 245 155493 1 genus species 1 750 245 Gallibacterium anatis 0 476528 genus 1 0 726 47735 species 1 0 726 Bibersteinia trehalosi Mannheimia 1021 0 4 genus 4 75984 1 75985 1 species 0 285 Mannheimia haemolytica 1 species 85404 461 Mannheimia varigena 0 no rank 1 2645054 271 0 1432056 1 species 0 271 Mannheimia sp. USDA-ARS-USMARC-1261 1 128 order 237 72274 Pseudomonadales 80110 0 1 135621 395 family 85 0 67663 Pseudomonadaceae 0 208 1849530 1 genus Oblitimonas alkaliphila 208 0 1 species 1697053 subfamily 3 351 1641 0 Azotobacter 1641 0 1 3 genus 22 352 353 species 1 0 1047 Azotobacter chroococcum 572 Azotobacter vinelandii 0 1 species 354 0 65419 Pseudomonas 1 286 2194 80 genus 7611 0 species group 6 136841 2539 Pseudomonas aeruginosa 0 1 species 287 0 575 Pseudomonas resinovorans 53412 1 species species 1 300 2366 Pseudomonas mendocina 0 1 species 43263 Pseudomonas alcaligenes 416 0 0 Pseudomonas citronellolis 1116 53408 species 1 1 species subgroup 1232139 599 0 1 species 1149133 Pseudomonas furukawaii 599 0 species 1 104087 1201 Pseudomonas frederiksbergensis 0 219572 1 species 0 441 Pseudomonas antarctica Pseudomonas koreensis 651 0 1 species 198620 136842 2 species group 0 2970 688 Pseudomonas fragi 0 1 species 296 587753 species 1 0 Pseudomonas chlororaphis 2282 0 7238 136849 species group 8 1 species 33069 Pseudomonas viridiflava 895 0 0 1305 251698 species subgroup 2 640 Pseudomonas savastanoi 0 1 species 29438 1 species 47877 665 Pseudomonas amygdali 0 0 289 2775504 no rank 1 1206777 1 species 0 289 Pseudomonas sp. Lz4W 0 985 Pseudomonas syringae group genomosp. 3 251701 species 1 Pseudomonas cichorii 322 0 1 species 36746 365 Pseudomonas avellanae 0 1 species 46257 0 3077 251695 1 species subgroup 317 1 species 0 3077 Pseudomonas syringae 237609 1 species 0 386 Pseudomonas alkylphenolica species 1 312306 381 Pseudomonas entomophila 0 Pseudomonas lurida 397 0 1 species 244566 0 574 Pseudomonas alcaliphila 101564 1 species 0 Pseudomonas parafulva 686 157782 1 species 0 Pseudomonas brassicacearum 1068 930166 1 species 0 336 Pseudomonas cremoricolorata 157783 1 species 0 9420 136843 9 species group 0 Pseudomonas corrugata 479 47879 1 species 47878 species 1 0 Pseudomonas azotoformans 853 76758 1 species 0 Pseudomonas orientalis 364 529 Pseudomonas mandelii 0 species 1 75612 0 661 Pseudomonas protegens 380021 1 species 545 Pseudomonas veronii 0 1 species 76761 0 Pseudomonas poae 398 200451 1 species 1 species 294 5093 Pseudomonas fluorescens 0 0 Pseudomonas trivialis 498 200450 1 species 1 species 216142 385 Pseudomonas rhizosphaerae 0 species 1 1853130 Pseudomonas silesiensis 391 0 0 Pseudomonas psychrotolerans 693 237610 1 species 409 Pseudomonas cerasi 0 species 1 1583341 4443 0 2 species group 136846 Pseudomonas balearica 369 0 1 species 74829 4074 0 1 species subgroup 578833 316 1 species 0 4074 Pseudomonas stutzeri 1 species 65741 Pseudomonas knackmussii 601 0 30 no rank 196821 13522 0 503 Pseudomonas sp. XWY-1 0 1 species 2069256 1 species 1338689 Pseudomonas sp. JY-Q 321 0 1028989 1 species 0 386 Pseudomonas sp. StFLB209 1 species 1827300 Pseudomonas sp. MYb193 381 0 590 Pseudomonas sp. FDAARGOS_380 0 1 species 2018067 1259844 species 1 0 418 Pseudomonas sp. FGI182 334 Pseudomonas sp. SWI6 0 1 species 2083051 1856685 1 species 0 609 Pseudomonas sp. TCU-HL1 2049589 1 species 0 261 Pseudomonas sp. HLS-6 0 345 Pseudomonas sp. UW4 1207075 1 species 1636610 species 1 0 Pseudomonas sp. PONIH3 532 1500687 species 1 0 Pseudomonas sp. St29 356 0 Pseudomonas sp. DR 5-09 553 1534110 1 species Pseudomonas sp. Os17 397 0 1 species 1500686 1659194 species 1 0 423 Pseudomonas sp. GR 6-02 1649877 1 species 0 Pseudomonas sp. CCOS 191 462 1415630 1 species 0 355 Pseudomonas sp. TKP Pseudomonas sp. LG1D9 432 0 1 species 2083054 1 species 69328 Pseudomonas sp. VLB120 614 0 0 554 Pseudomonas sp. NC02 2067572 1 species 0 Pseudomonas sp. SWI36 414 2083052 1 species 1981174 1 species 0 Pseudomonas sp. M30-35 324 1930532 1 species 0 243 Pseudomonas sp. CC6-YY-74 1931241 1 species 0 Pseudomonas sp. S-6-2 556 1898684 1 species 0 518 Pseudomonas sp. LPH1 0 Pseudomonas sp. MRSN12121 446 1611770 1 species 1283291 species 1 0 Pseudomonas sp. URMO17WK12:I11 612 Pseudomonas sp. ATCC 13867 756 0 1 species 1294143 444 Pseudomonas sp. LH1G9 0 1 species 2083055 species 1 2083053 383 Pseudomonas sp. SWI44 0 0 8998 136845 6 species group 0 621 Pseudomonas plecoglossicida 70775 1 species 1 species 303 4815 Pseudomonas putida 0 0 Pseudomonas mosselii 1130 78327 species 1 species 1 47885 Pseudomonas oryzihabitans 592 0 0 1206 Pseudomonas monteilii 76759 1 species 0 634 Pseudomonas fulva 47880 species 1 423 Pseudomonas versuta 0 species 1 1788301 0 Moraxellaceae 12210 468 57 family 42 1 0 Moraxella 1502 1 475 5 genus 12 0 Moraxella catarrhalis 149 480 1 species 511 Moraxella osloensis 0 species 1 34062 0 Moraxella bovoculi 502 386891 1 species 328 Moraxella ovis 0 1 species 29433 0 Acinetobacter 8941 469 89 25 genus 1 487316 1 species 0 168 Acinetobacter soli 1 species 29430 Acinetobacter haemolyticus 161 0 202950 1 species 0 312 Acinetobacter sp. ADP1 312 0 strain 1 62977 522 Acinetobacter bereziniae 0 1 species 106648 0 374 Acinetobacter indicus 756892 1 species 196816 7 no rank 0 2310 1646498 1 species 0 Acinetobacter sp. TTH0-4 369 1808001 species 1 0 Acinetobacter sp. LoGeW2-3 438 species 1 1608473 Acinetobacter sp. NCu2D-2 440 0 0 154 Acinetobacter sp. SWBY1 2079596 1 species 0 434 Acinetobacter sp. ACNIH1 1636603 1 species 1758189 1 species 0 Acinetobacter sp. ACNIH2 103 Acinetobacter sp. TGL-Y2 372 0 1 species 1407071 1789224 1 species 0 128 Acinetobacter larvae 0 183 Acinetobacter oleivorans 1148157 1 species Acinetobacter johnsonii 132 0 species 1 40214 3176 0 species group 5 909768 0 Acinetobacter nosocomialis 192 106654 1 species 1 species 1785128 Acinetobacter lactucae 135 0 0 531 Acinetobacter calcoaceticus 471 1 species 470 species 1 0 1432 Acinetobacter baumannii 1 species 48296 Acinetobacter pittii 886 0 1 species 40216 Acinetobacter radioresistens 232 0 340 Acinetobacter equi 0 species 1 1324350 Acinetobacter junii 478 0 1 species 40215 108981 species 1 0 336 Acinetobacter schindleri Psychrobacter 1710 0 57 11 genus 497 1 475 Psychrobacter arcticus 0 species 1 334543 species 1 330922 Psychrobacter cryohalolentis 227 0 111 Psychrobacter alimentarius 0 1 species 261164 0 767 196806 6 no rank Psychrobacter sp. P2G3 97 0 1 species 1699622 species 1 349106 82 Psychrobacter sp. PRwf-1 0 0 133 Psychrobacter sp. G 571800 species 1 1720344 1 species 0 Psychrobacter sp. AntiMn-1 106 143 Psychrobacter sp. P11G5 0 species 1 1699624 1028416 species 1 0 Psychrobacter sp. DAB_AL43B 206 0 73 Psychrobacter urativorans 45610 1 species 135624 27 order 59 1 0 15741 Aeromonadales 26 family 131 84642 1 15682 Aeromonadaceae 0 1 1 3 genus 225143 383 Oceanisphaera 0 284 Oceanisphaera sp. AMac2203 0 1 species 1903694 Oceanisphaera profunda 98 0 1 species 1416627 0 501 Tolumonas 43947 2 2 genus 1 0 Tolumonas auensis 499 43948 species 1 0 630 129577 genus 1 630 0 no rank 1 2636315 511062 1 species 0 Oceanimonas sp. GK1 630 347533 1 genus 0 747 747 Zobellella denitrificans 0 1 species 347534 13290 Aeromonas 0 1 844 18 genus 642 1 species 645 1064 Aeromonas salmonicida 0 0 486 Aeromonas dhakensis 196024 1 species 565 Aeromonas media 0 1 species 651 1 species 648 Aeromonas caviae 454 0 8 no rank 257493 4057 0 0 Aeromonas sp. ASNIH1 371 1636606 1 species 1636607 1 species 0 Aeromonas sp. ASNIH2 437 1758179 species 1 0 523 Aeromonas sp. ASNIH5 Aeromonas sp. ASNIH4 652 0 1 species 1636609 Aeromonas sp. ASNIH7 566 0 1 species 1920107 1 species 2033032 Aeromonas sp. CA23 515 0 0 588 Aeromonas sp. CU5 2033033 1 species 0 Aeromonas sp. ASNIH3 405 1636608 1 species Aeromonas schubertii 566 0 1 species 652 644 1 species 0 2757 Aeromonas hydrophila 0 Aeromonas rivipollensis 591 948519 1 species Aeromonas veronii 1218 0 1 species 654 558964 species 1 0 688 Aeromonas aquatica 0 16201 Oceanospirillales 135619 121 order 66 1 0 504 Hahellaceae 1 224379 6 3 family 1 158481 2 genus 4 0 498 Hahella 494 Hahella chejuensis 0 1 species 158327 8 family 34 224372 1 2159 Alcanivoracaceae 0 1 genus 2025617 218 0 1 species 1917421 Ketobacter alkanivorans 218 0 1907 Alcanivorax 0 genus 6 25 59753 1 139 0 1 no rank 2638842 1 species 1113728 139 Alcanivorax sp. NBRC 101098 0 0 Alcanivorax dieselolei 644 285091 species 1 0 528 Alcanivorax pacificus 1306787 1 species 1 species 1094342 431 Alcanivorax xenomutans 0 59754 1 species 0 140 Alcanivorax borkumensis Saccharospirillaceae 832 0 1 4 4 family 255527 1 genus 230494 223 0 0 223 Reinekea forsetii 1336806 species 1 605 Gynuella 0 1 genus 2 4 1445504 0 601 Gynuella sunshinyii 1445505 1 species 2618 Oceanospirillaceae 0 1 60 family 12 135620 1537406 2 genus 1 1 0 368 Bacterioplanes 0 Bacterioplanes sanyensis 367 1249553 1 species 1 48075 genus 2 4 0 614 Marinobacterium 0 Marinobacterium aestuarii 610 1821621 1 species 1 4 genus 5 28253 Marinomonas 933 0 0 Marinomonas mediterranea 292 119864 1 species 367 0 1 no rank 196814 367 Marinomonas sp. MWYL1 0 species 1 400668 936476 1 species 0 269 Marinomonas posidonica genus 1 187492 474 0 1 species 187493 Thalassolituus oleivorans 474 0 0 Oleispira 169 1 188907 genus 2 1 188908 species 1 0 168 Oleispira antarctica 0 Oleiphilaceae 313 1 191033 2 2 family 0 311 141450 genus 1 141451 1 species 0 Oleiphilus messinensis 311 0 Halomonadaceae 8672 28256 266 family 30 1 114403 3 no rank 0 54 genus 1 235572 33 0 species 1 91844 33 Candidatus Portiera aleyrodidarum 0 0 7 114185 1 genus 1 species 114186 7 Candidatus Carsonella ruddii 0 14 0 genus 1 1495768 1 species 1495769 14 Candidatus Evansia muelleri 0 712 Kushneria 0 1 7 3 genus 504090 157779 1 species 0 Kushneria marisflavi 315 698828 1 species 0 390 Kushneria konosiri 1 2 genus 6 376488 543 Halotalea 0 1 species 376489 Halotalea alkalilenta 537 0 2 2 genus 42054 1 449 Chromohalobacter 0 0 Chromohalobacter salexigens 447 158080 species 1 2 genus 4 204286 1 481 Cobetia 0 Cobetia marina 477 0 1 species 28258 0 Halomonas 5646 1 2745 103 15 genus 1 species 1897729 384 Halomonas aestuarii 0 species 1 507626 Halomonas chromatireducens 378 0 0 102 Halomonas campaniensis 213554 1 species 0 Halomonas beimenensis 429 475662 1 species 0 Halomonas hydrothermalis 717 115561 species 1 349 Halomonas huangheensis 0 1 species 1178482 0 3184 2609666 8 no rank 1883416 1 species 0 Halomonas sp. 1513 849 1118153 species 1 0 Halomonas sp. GFAJ-1 207 1 species 1962264 Halomonas sp. 'Soap Lake #7' 389 0 1949203 1 species 0 389 Halomonas sp. 'Soap Lake #6' Halomonas sp. KO116 352 0 species 1 1504981 Halomonas sp. R57-5 332 0 1 species 1610576 1 species 1971364 Halomonas sp. GT 121 0 2136172 species 1 0 545 Halomonas sp. SF2003 3 2 genus 404432 1 Salinicola 521 0 1771309 1 species 0 Salinicola tamaricis 518 Kangiellaceae 982 0 1 6 family 5 1920240 Kangiella 977 0 22 5 genus 261963 1 261964 1 species 0 394 Kangiella koreensis species 1 1561924 215 Kangiella profundi 0 1 species 1144748 Kangiella sediminilitoris 239 0 0 Kangiella geojedonensis 107 914150 species 1 0 Cardiobacteriales 258 1 135615 order 2 2 256 0 family 1 868 869 1 genus 0 256 0 256 Dichelobacter nodosus 870 species 1 0 Chromatiales 11290 135613 47 order 115 1 4 family 2 255526 1 660 Halothiobacillaceae 0 658 Halothiobacillus 0 2 genus 3 109262 1 no rank 1 2636392 476 0 0 476 Halothiobacillus sp. LS2 1860122 1 species Halothiobacillus neapolitanus 180 0 1 species 927 3844 Ectothiorhodospiraceae 0 38 18 family 72276 1 392 Spiribacter 0 1 3 genus 3 1335745 Spiribacter curvatus 302 0 1 species 1335757 0 Spiribacter salinus 87 1335746 1 species 0 294 Acidihalobacter 1 1765964 1 2 genus 160660 1 species 0 293 Acidihalobacter prosperus 406 Halorhodospira 0 2 genus 2 85108 1 404 Halorhodospira halophila 0 1 species 1053 133193 2 genus 4 1 0 Alkalilimnicola 375 0 Alkalilimnicola ehrlichii 371 351052 1 species 1873 Thioalkalivibrio 0 1 6 genus 31 106633 0 395 Thioalkalivibrio nitratireducens 186931 species 1 385 Thioalkalivibrio paradoxus 0 1 species 108010 no rank 1 2621013 194 0 396595 species 1 0 Thioalkalivibrio sp. K90mix 194 564 Thioalkalivibrio sulfidiphilus 0 1 species 1033854 106634 species 1 0 304 Thioalkalivibrio versutus 1051 6 2 genus 1 0 466 Ectothiorhodospira 0 460 2684909 1 no rank 1442136 1 species 0 460 Ectothiorhodospira sp. BSL-9 0 636 451214 no rank 2 2 genus 4 1273155 1 636 Thiohalobacter 0 585455 1 species 0 632 Thiohalobacter thiocyanaticus 1676141 6 3 family 1 0 Wenzhouxiangellaceae 409 0 403 Wenzhouxiangella 1 1676142 2 genus 16 0 387 Wenzhouxiangella marina 1579979 1 species 0 266 1738654 family 1 0 266 1738655 1 genus 1 species 1548547 Woeseia oceani 266 0 0 Chromatiaceae 4853 1046 36 15 family 1 0 717 82569 no rank 1 1978339 1 species 0 717 Chromatiaceae bacterium 2141T.STBD.0c.01a 1 2 genus 12 13724 620 Thiocystis 0 608 Thiocystis violascens 0 1 species 73141 Marichromatium 501 0 1 2 genus 4 85076 Marichromatium purpuratum 497 0 1 species 37487 genus 1 85072 1006 0 1 species 1049 1006 Allochromatium vinosum 0 1227 3 genus 0 455 97 Nitrosococcus watsonii 0 1 species 473531 1 species 133539 197 Nitrosococcus halophilus 0 Nitrosococcus oceani 161 0 1 species 1229 0 163 1980513 1 genus 163 Candidatus Nitrosoglobus terrae 0 1 species 1630141 Thioflavicoccus 439 0 5 genus 2 156885 1 80679 1 species 0 Thioflavicoccus mobilis 434 1 6 genus 2 53392 Thiodictyon 916 0 0 Candidatus Thiodictyon syntrophicum 910 1166950 1 species 1 449719 2 3 family 0 Granulosicoccaceae 507 505 Granulosicoccus 0 1 2 genus 1 437504 437505 species 1 0 Granulosicoccus antarcticus 504 1 order 241 440 91347 Enterobacterales 161559 0 Budviciaceae 611 0 2 family 3 1903416 1 0 609 Pragia 1 82984 2 genus 5 604 Pragia fontium 0 1 species 82985 Pectobacteriaceae 10749 0 1 20 family 37 1903410 0 470 Brenneria 71655 1 genus 2 1 469 Brenneria goodwinii 0 species 1 1109412 1 122277 66 6 genus 0 4546 Pectobacterium 0 Pectobacterium carotovorum 2634 554 species 1 species 1 2042057 Pectobacterium polaris 823 0 1905730 1 species 0 404 Pectobacterium parmentieri 55208 1 species 0 317 Pectobacterium wasabiae 29471 species 1 0 Pectobacterium atrosepticum 302 0 Dickeya 4353 204037 74 genus 6 1 0 Dickeya dadantii 641 204038 1 species 1089444 1 species 0 Dickeya solani 1232 0 Dickeya fangzhongdai 588 1778540 species 1 Dickeya zeae 1258 0 species 1 204042 species 1 204039 560 Dickeya dianthicola 0 1 84565 5 genus 20 0 1343 Sodalis 0 Candidatus Sodalis pierantonius 294 1486991 1 species 1 species 1239307 393 Sodalis praecaptivus 0 0 133 Sodalis endosymbiont of Henestaris halophilus 1929246 1 species 63612 1 species 0 503 Sodalis glossinidius Morganellaceae 6238 0 27 family 21 1903414 1 0 916 Proteus 1 583 3 genus 3 0 243 Proteus vulgaris 585 1 species 1 species 584 670 Proteus mirabilis 0 0 Xenorhabdus 2059 1 626 40 genus 6 0 Xenorhabdus nematophila 642 628 1 species Xenorhabdus hominickii 371 0 1 species 351679 0 239 Xenorhabdus poinarii 40577 1 species 40576 1 species 0 Xenorhabdus bovienii 377 Xenorhabdus doucetiae 390 0 1 species 351671 0 1278 Providencia 586 3 4 genus 1 Providencia alcalifaciens 582 0 1 species 126385 587 1 species 0 Providencia rettgeri 146 0 547 Providencia stuartii 588 1 species 581 7 2 genus 1 0 1132 Morganella Morganella morganii 1125 0 species 1 582 Photorhabdus 677 0 1 60 4 genus 29487 Photorhabdus asymbiotica 188 0 1 species 291112 29488 1 species 0 Photorhabdus luminescens 237 1 species 574560 192 Photorhabdus temperata 0 0 149 637 genus 1 1 species 634113 149 Arsenophonus symbiont of Lipoptena fortisetosa 0 0 4508 Hafniaceae 1903412 14 family 24 1 0 1230 Hafnia 1 568 33 genus 3 206 0 no rank 1 2621980 1 species 1848580 Hafnia sp. CBA7124 206 0 0 Hafnia alvei 991 569 1 species 0 3061 Edwardsiella 1 635 181 8 genus 0 Edwardsiella anguillarum 218 1821960 1 species 0 Edwardsiella hoshinae 358 93378 1 species no rank 2 2676541 769 0 1 species 1578828 Edwardsiella sp. EA181011 554 0 1 species 1650654 215 Edwardsiella sp. LADL05-105 0 0 383 Edwardsiella ictaluri 67780 1 species 1 species 1263550 417 Edwardsiella piscicida 0 636 1 species 0 Edwardsiella tarda 735 193 Obesumbacterium 0 1 genus 2 3 82982 0 Obesumbacterium proteus 190 82983 species 1 Erwiniaceae 12549 0 1 30 26 family 1903409 0 764 32199 genus 1 1 species 9 Buchnera aphidicola 764 0 1133 0 2 genus 2100764 665913 species 1 0 619 Pantoea calida 0 Pantoea gaviniae 514 665914 species 1 106 8 genus 551 1 3366 Erwinia 0 1 species 182337 Erwinia billingiae 557 0 79967 1 species 0 394 Erwinia pyrifoliae 0 813 Erwinia gerundensis 1619313 1 species species 1 338565 Erwinia tasmaniensis 608 0 1 species 1922217 49 Candidatus Erwinia sp. ErCipseudotaxifoliae 0 552 species 1 0 368 Erwinia amylovora 471 0 1 no rank 2622719 0 471 Erwinia sp. Ejp617 215689 1 species genus 2 8 82986 1 Tatumella 317 0 309 Tatumella citrea 0 species 1 53336 genus 1 51228 148 0 51229 1 species 0 Wigglesworthia glossinidia 148 0 Pantoea 6791 1 53335 141 genus 11 0 Pantoea stewartii 753 66269 1 species 1891675 1 species 0 490 Pantoea alhagi 2630326 no rank 3 0 2223 0 1122 Pantoea sp. At-9b 592316 1 species Pantoea sp. PSNIH2 587 0 1 species 1484157 1 species 1484158 514 Pantoea sp. PSNIH1 0 1 species 470934 Pantoea vagans 962 0 Pantoea ananatis 788 0 species 1 553 1 species 1235990 42 Candidatus Pantoea carbekii 0 species group 1 1654067 1151 0 1151 Pantoea agglomerans 0 1 species 549 1076550 species 1 0 Pantoea rwandensis 241 451511 2 no rank 0 587 Plesiomonas 587 0 1 genus 2 12 702 703 species 1 0 575 Plesiomonas shigelloides 0 Yersiniaceae 22162 1 1903411 family 39 107 1 31 genus 4 34037 1614 Rahnella 0 0 1139 2635087 no rank 2 Rahnella sp. Y9602 459 0 1 species 741091 1805933 1 species 0 680 Rouxiella sp. ERMR1:05 34038 species 1 0 Rahnella aquatilis 444 113 13 genus 629 1 5584 Yersinia 0 0 856 Yersinia frederiksenii 29484 species 1 species 1 630 1449 Yersinia enterocolitica 0 631 1 species 0 183 Yersinia intermedia 3 species group 1649845 1123 0 633 1 species 0 546 Yersinia pseudotuberculosis 0 415 Yersinia pestis 632 1 species 0 Yersinia similis 162 367190 1 species 2653513 1 no rank 0 133 Yersinia sp. FDAARGOS_228 133 0 1 species 1839800 1 species 263819 159 Yersinia aleksiciae 0 1 species 28152 Yersinia kristensenii 563 0 0 Yersinia aldovae 441 29483 1 species 0 Yersinia rohdei 243 29485 1 species 1 species 29486 Yersinia ruckeri 321 0 1 929812 genus 2 2 0 Gibbsiella 356 929813 1 species 0 Gibbsiella quercinecans 354 1565532 genus 1 0 2 Rouxiella 1 16 genus 515 613 Serratia 14149 0 Serratia proteamaculans 749 0 1 species 28151 1 species 615 Serratia marcescens 2447 0 no rank 8 2647522 5307 0 Serratia sp. FGI94 1138 0 species 1 671990 1327989 1 species 0 Serratia sp. FS14 636 104623 1 species 0 637 Serratia sp. ATCC 39006 423 Serratia sp. SSNIH1 0 1 species 1758196 515 Serratia sp. AS12 0 species 1 768490 879 Serratia sp. MYb239 0 species 1 2033438 564 Serratia sp. SCBI 0 1 species 488142 515 Serratia sp. AS13 0 1 species 768493 0 746 Serratia rubidaea 61652 1 species 0 Serratia fonticola 967 47917 1 species 598 Serratia ficaria 0 species 1 61651 0 2050 Serratia plymuthica 82996 species 1 0 Serratia liquefaciens 770 614 1 species Chania 350 0 2 genus 2 1745211 1 1639108 1 species 0 348 Chania multitudinisentens 472 115 family 543 1 Enterobacteriaceae 103715 0 0 Escherichia 15253 1 561 genus 5 67 1 species 562 Escherichia coli 12985 0 208962 1 species 0 Escherichia albertii 1089 597 Escherichia fergusonii 0 species 1 564 0 Escherichia marmotae 515 1499973 species 1 Cronobacter 3409 0 47 8 genus 413496 1 0 372 Cronobacter turicensis 413502 1 species 0 Cronobacter universalis 579 535744 species 1 350 Cronobacter muytjensii 0 1 species 413501 species 1 413503 Cronobacter malonaticus 323 0 Cronobacter dublinensis 561 0 1 species 413497 1163710 1 species 0 315 Cronobacter condimenti 28141 1 species 0 862 Cronobacter sakazakii 0 39348 Enterobacter 1 547 845 22 genus 32351 0 species group 12 354276 Enterobacter kobei 726 0 1 species 208224 299767 species 1 0 450 Enterobacter ludwigii 69218 1 species 0 Enterobacter cancerogenus 916 species 1 61645 Enterobacter asburiae 1818 0 1 species 1812935 716 Enterobacter cloacae complex 'Hoffmann cluster IV' 0 0 Enterobacter cloacae 13843 550 1 species 2757714 3 no rank 0 1575 1 species 2077137 516 Enterobacter cloacae complex sp. FDA-CDC-AR_0132 0 0 Enterobacter cloacae complex bacterium 520 2027919 1 species 1915310 1 species 0 539 Enterobacter cloacae complex sp. ECNIH7 158836 7349 3 species 1 0 Enterobacter hormaechei 12307 0 Enterobacter cloacae complex 'Hoffmann cluster III' 2535 1812934 1 subspecies 1296536 subspecies 1 0 2423 Enterobacter xiangfangensis no rank 9 2608935 6152 0 species 1 1166130 Enterobacter sp. R4-368 407 0 1868135 1 species 0 Enterobacter sp. HK169 453 species 1 1560339 Enterobacter sp. E20 496 0 1 species 1827481 Enterobacter sp. ODB01 476 0 Enterobacter sp. SA187 761 0 1 species 1914861 2165 Enterobacter sp. CRENT-193 0 species 1 2051905 Enterobacter sp. FY-07 380 0 species 1 1692238 1977566 1 species 0 472 Enterobacter sp. Crenshaw 399742 1 species 0 Enterobacter sp. 638 542 0 128 1048757 1 genus 1048758 species 1 0 Candidatus Moranella endobia 128 Cedecea 1345 0 1 2 2 genus 158483 158822 1 species 0 Cedecea neteri 1343 4778 Salmonella 0 1 4 genus 3 590 4165 Salmonella enterica 0 1 species 28901 609 Salmonella bongori 0 1 species 54736 0 Raoultella 1591 160674 genus 3 69 1 575 1 species 0 464 Raoultella planticola Raoultella ornithinolytica 1058 0 1 species 54291 0 389 1335483 genus 1 0 Shimwellia blattae 389 563 species 1 0 1819 Pluralibacter 1330546 3 genus 2 1 1334193 species 1 0 [Enterobacter] lignolyticus 699 0 Pluralibacter gergoviae 1118 61647 1 species genus 1 579 523 0 61648 1 species 0 Kluyvera intermedia 523 1 544 191 genus 14 0 8197 Citrobacter 1 species 67824 Citrobacter farmeri 464 0 no rank 2 2644389 525 0 1920110 1 species 0 Citrobacter sp. CFNIH10 259 0 Citrobacter sp. FDAARGOS_156 266 1702170 species 1 545 species 1 0 Citrobacter koseri 526 0 1003 Citrobacter amalonaticus 35703 species 1 1344959 7 species group 0 4941 Citrobacter werkmanii 822 0 1 species 67827 0 438 Citrobacter freundii complex sp. CFNIH9 2077149 species 1 1 species 546 Citrobacter freundii 1696 0 306 Citrobacter freundii complex sp. CFNIH2 0 species 1 2066049 1 species 57706 Citrobacter braakii 1089 0 1 species 2077148 262 Citrobacter freundii complex sp. CFNIH4 0 2077147 1 species 0 328 Citrobacter freundii complex sp. CFNIH3 1 species 67825 547 Citrobacter rodentium 0 Shigella 3976 0 71 4 genus 620 1 0 1581 2629414 no rank 1 1 species 1813821 1581 Shigella sp. PAMC 28760 0 1 species 623 976 Shigella flexneri 0 1348 Shigella dysenteriae 0 species 1 622 409304 genus 1 0 57 Candidatus Ishikawaella capsulata 57 0 1 species 168169 1 5 genus 4 1330545 1918 Lelliottia 0 1907578 species 1 0 Lelliottia jeotgali 384 1 species 69220 Lelliottia nimipressuralis 792 0 Lelliottia amnigena 737 0 1 species 61646 2573 Kosakonia 0 1 genus 5 29 1330547 1 species 497725 Kosakonia oryzae 491 0 283686 1 species 0 929 Kosakonia radicincitans species 1 208223 641 Kosakonia cowanii 0 483 Kosakonia sacchari 0 1 species 1158459 0 2604 36866 no rank 5 1 species 693444 Enterobacteriaceae bacterium strain FGI 57 438 0 0 Enterobacteriaceae bacterium ENNIH2 390 1920109 1 species 464 Plautia stali symbiont 0 1 species 891974 Enterobacteriaceae bacterium ENNIH1 729 0 1 species 2066051 1920128 1 species 0 Enterobacteriaceae bacterium ENNIH3 583 1 genus 401618 71 0 0 Candidatus Riesia pediculicola 71 401619 1 species 1016 0 17 no rank 191675 0 1016 84563 17 clade 1 1906657 1 genus 2 0 Candidatus Doolittlea 40 0 Candidatus Doolittlea endobia 39 1778262 species 1 0 298 146507 clade 3 secondary endosymbiont of Heteropsylla cubana 121 0 1 species 134287 1 species 1199245 64 secondary endosymbiont of Ctenarytaina eucalypti 0 113 0 1 genus 568987 1 species 138072 Candidatus Hamiltonella defensa 113 0 157 0 1 genus 1906661 0 157 Candidatus Gullanella endobia 1070130 1 species 0 17 1906659 genus 1 Candidatus Hoaglandella endobia 17 0 1 species 1778263 1 genus 1682492 114 0 1410383 species 1 0 114 Candidatus Tachikawaea gelatinosa 84564 clade 7 0 307 1 genus 7 203804 1 307 Candidatus Blochmannia 0 203907 species 1 0 Candidatus Blochmannia floridanus 24 251542 1 species 0 93 Candidatus Blochmannia chromaiodes 101534 1 species 0 100 Candidatus Blochmannia pennsylvanicus species 1 251535 Candidatus Blochmannia vafer 33 0 56 0 no rank 2 711328 1 species 1505597 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus 31 0 1 species 1505596 25 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0 1906660 genus 1 0 23 0 23 Candidatus Mikella endobia 1778264 1 species 60 0 clade 1 199891 0 60 secondary endosymbiont of Trabutina mannipara 1835721 1 species 1 genus 10 303 570 Klebsiella 12500 0 1 species 548 Klebsiella aerogenes 1085 0 549 Klebsiella quasivariicola 0 1 species 2026240 571 1 species 0 Klebsiella oxytoca 2088 244366 1 species 0 Klebsiella variicola 1428 species 1 573 Klebsiella pneumoniae 3826 0 1463165 1 species 0 Klebsiella quasipneumoniae 686 1134687 1 species 0 Klebsiella michiganensis 1313 0 1222 2608929 2 no rank 575 Klebsiella sp. LTGPAF-6F 0 species 1 1905288 species 1 1934254 Klebsiella sp. M5al 647 0 0 Leclercia 1748 83654 57 4 genus 1 no rank 2 2627398 1183 0 1920114 1 species 0 Leclercia sp. LSNIH1 565 1 species 1920116 618 Leclercia sp. LSNIH3 0 0 Leclercia adecarboxylata 508 83655 species 1 135618 21 13 order 1 0 Methylococcales 3427 3406 Methylococcaceae 0 52 family 12 403 1 413 2 genus 17 1 0 Methylococcus 336 0 319 Methylococcus capsulatus 414 species 1 302 Methylovulum 0 1 2 genus 762296 1 1704499 1 species 0 301 Methylovulum psychrotolerans 39773 2 genus 2 1 0 405 Methylomicrobium 271065 1 species 0 Methylomicrobium alcaliphilum 403 Methylomonas 2311 0 1 22 genus 5 416 0 612 Methylomonas methanica 421 1 species 0 Methylomonas koyamae 502 702114 1 species 582 Methylomonas denitrificans 0 1 species 1538553 1 no rank 2608980 593 0 0 Methylomonas sp. DH-1 593 1727196 1 species 0 Acidiferrobacterales 1003 1 1692040 16 6 order Acidiferrobacteraceae 987 0 1 5 family 18 1692041 1744881 2 genus 17 1 0 Sulfuricaulis 536 0 Sulfuricaulis limicola 519 1620215 1 species 433 Sulfurifustis 0 genus 2 8 1692042 1 0 425 Sulfurifustis variabilis 1675686 1 species order 3 3 1775403 1 Nevskiales 374 0 568386 1 family 0 3 Sinobacteraceae 2689614 1 family 0 368 469322 genus 1 0 368 Steroidobacter denitrificans 368 0 1 species 465721 72273 27 order 6 1 0 Thiotrichales 5836 1 15 3 family 135617 276 Thiotrichaceae 0 0 146 1021 1 genus species 1 288004 Beggiatoa leptomitoformis 146 0 0 115 40751 1 genus 1 species 40754 Thioploca ingrica 115 0 135616 family 10 41 1 0 2114 Piscirickettsiaceae 2 genus 933 186 0 0 Thiomicrospira aerophila 89 92245 1 species species 1 147268 Thiomicrospira cyclica 97 0 genus 1 1237 290 0 Piscirickettsia salmonis 290 0 1 species 1238 925 0 3 genus 34067 0 602 2621467 2 no rank 0 Cycloclasticus sp. PY97N 320 728003 species 1 385025 1 species 0 Cycloclasticus sp. P1 282 1329899 1 species 0 323 Cycloclasticus zancles 0 418 40222 genus 2 255 Methylophaga nitratireducenticrescens 0 1 species 754476 0 Methylophaga frappieri 163 754477 1 species 28884 genus 1 0 254 39765 species 1 0 254 Hydrogenovibrio crunogenus family 13 34064 3440 0 136 0 1 genus 1869285 species 1 594679 Allofrancisella guangzhouensis 136 0 0 Francisella 3304 262 8 12 genus 1 622488 1 species 0 Francisella hispaniensis 230 128 Francisella sp. TX077308 0 1 species 573569 1 species 954 218 Francisella persica 0 0 Francisella philomiragia 502 28110 species 1 Francisella noatunensis 315 0 species 1 657445 Francisella sp. CA97-1460 298 0 1 species 1542390 573570 1 species 0 Francisella sp. TX077310 162 no rank 2 2610885 480 0 0 Francisella sp. FSC1006 182 1547445 1 species 298 Francisella sp. MA067296 0 1 species 475375 263 1 species 0 Francisella tularensis 835 1 species 549298 Francisella halioticida 128 0 1930617 1 phylum 0 654 654 0 1 class 1962850 1962852 1 order 0 654 1962854 1 family 0 654 654 0 genus 1 187144 1 species 187145 654 Caldithrix abyssi 0 74152 6 phylum 0 1628 no rank 1 99260 398 0 0 398 uncultured Termite group 1 bacterium 167965 1 species 447830 3 class 0 1076 1 order 3 1 1783344 Endomicrobiales 1076 0 1783343 2 family 0 1075 0 1075 1408194 genus 2 1408204 species 1 0 418 Candidatus Endomicrobium trichonymphae 1408281 1 species 0 Endomicrobium proavitum 657 1 641853 class 2 1 0 Elusimicrobia 154 641854 1 order 0 153 0 153 641876 1 family 423604 genus 1 0 153 1 species 423605 153 Elusimicrobium minutum 0 29172 0 254 superkingdom 2157 1783276 clade 1 0 25 1801631 phylum 1 0 25 0 25 2490204 genus 1 0 Candidatus Micrarchaeota archaeon Mia14 25 1920749 1 species 1783275 45 clade 0 2746 0 20 51967 1 phylum 20 0 1 genus 498845 0 Candidatus Korarchaeum cryptofilum 20 498846 species 1 651137 10 phylum 0 902 31932 3 order 0 430 338190 family 3 0 430 306 0 2 genus 338191 161 Candidatus Nitrosopumilus adriaticus 0 1 species 1580092 0 145 Candidatus Nitrosopumilus sediminis 1229909 1 species 1 genus 1993653 124 0 124 Candidatus Nitrosomarinus catalina 0 1 species 1898749 651142 3 no rank 0 386 1825023 2 genus 0 299 0 Candidatus Nitrosotenuis sp. AQ6f 182 1846278 1 species 0 117 Candidatus Nitrosotenuis cloacae 1603555 1 species 87 0 1 genus 1593364 0 Candidatus Nitrosopelagicus brevis 87 1410606 1 species 0 86 1643678 4 class 27 0 1 order 1968909 1968910 1 family 0 27 1 genus 498374 27 0 27 Candidatus Nitrosocaldus islandicus 0 1 species 2045011 1 1 3 order 1033996 59 Nitrososphaerales 0 2 family 1033997 58 0 0 Nitrososphaera 58 1 497726 1 2 genus 1 species 1034015 57 Nitrososphaera viennensis 0 0 1824 28889 phylum 34 1 183924 2 class 34 0 1824 Thermoprotei order 2 871006 124 0 1 family 871007 23 0 0 23 105850 genus 1 23 Acidilobus saccharovorans 0 1 species 242703 family 1 255472 101 0 0 101 200414 genus 1 200415 species 1 0 101 Caldisphaera lagunensis 0 988 2281 8 order 118883 8 family 0 988 0 41 2100760 1 genus 1 species 2287 41 Sulfolobus solfataricus 0 3 genus 2284 680 0 2641160 1 no rank 0 62 1891280 1 species 0 62 Sulfolobus sp. A20 0 82 Sulfolobus acidocaldarius 2285 species 1 1 species 43080 Sulfolobus islandicus 536 0 69655 genus 1 0 129 129 Sulfolobus tokodaii 0 1 species 111955 0 78 41980 2 genus 1 species 43687 Metallosphaera sedula 22 0 1 species 1006005 Metallosphaera cuprina 56 0 12914 1 genus 0 60 563177 1 species 0 60 Acidianus hospitalis 114380 order 11 0 333 0 107 2307 3 family 24 0 genus 1 54251 Pyrolobus fumarii 24 0 1 species 54252 55 0 genus 1 54247 Hyperthermus butylicus 55 0 1 species 54248 genus 1 2308 28 0 1273541 1 species 0 28 Pyrodictium delaneyi 2272 family 8 0 226 0 39 2273 2 genus species 1 94694 Desulfurococcus amylolyticus 18 0 0 Desulfurococcus mucosus 21 2275 1 species 2279 genus 2 0 83 50 Staphylothermus hellenicus 0 1 species 84599 33 Staphylothermus marinus 0 1 species 2280 477695 1 genus 0 7 Thermogladius calderae 7 0 1 species 1200300 0 40 54258 genus 2 species 1 160233 28 Ignicoccus hospitalis 0 Ignicoccus islandicus 12 0 1 species 54259 57 0 1 genus 54253 57 Thermosphaera aggregans 0 1 species 54254 377 0 order 12 2266 5 family 114378 167 0 1 2268 5 genus 1 0 167 Thermofilum 0 Thermofilum pendens 19 2269 1 species Thermofilum carboxyditrophus 63 0 1 species 1483572 1 species 1365176 Thermofilum adornatus 56 0 1550241 1 species 0 28 Thermofilum uzonense 1 2267 7 family 3 0 210 Thermoproteaceae 2270 genus 2 0 83 1 species 2271 Thermoproteus tenax 35 0 Thermoproteus uzoniensis 48 0 1 species 184117 24 0 genus 1 2276 2277 species 1 0 24 Pyrobaculum islandicum 0 59 164450 2 genus 985052 1 species 0 Vulcanisaeta moutnovskia 25 164451 1 species 0 34 Vulcanisaeta distributa genus 1 76886 41 0 1 species 76887 Caldivirga maquilingensis 41 0 28890 208 phylum 0 26401 13643 0 109 clade 2290931 Halobacteria 6166 0 class 63 23 183963 1 2235 25 order 51 1 0 Halobacteriales 2367 2236 family 9 1 1 0 Halobacteriaceae 622 genus 1 1980514 89 0 1873524 1 species 0 Halodesulfurarchaeum formicicum 89 genus 1 1656823 67 0 1 species 1604004 67 Halanaeroarchaeum sulfurireducens 0 1 genus 2 3 332246 Halalkalicoccus 108 0 Halalkalicoccus jeotgali 105 0 1 species 413810 Halobacterium 357 0 1 4 genus 2239 1 1 species 2242 Halobacterium salinarum 107 0 1407499 1 species 0 125 Halobacterium hubeiense 0 124 2668073 no rank 1 Halobacterium sp. DL1 124 0 species 1 751944 1 1963268 15 family 13 0 1694 Haloarculaceae 0 712 Haloarcula 1 2237 5 genus 29 51589 species 1 0 Haloarcula hispanica 185 179 0 no rank 1 2624677 1 species 1592728 Haloarcula sp. CBA1115 179 0 2238 species 1 0 202 Haloarcula marismortui Haloarcula taiwanensis 117 0 1 species 1932004 0 423 146825 genus 2 123 Halorhabdus tiamatea 0 1 species 430914 1 species 146826 Halorhabdus utahensis 300 0 63743 3 genus 1 1 0 Natronomonas 272 416273 1 species 0 Natronomonas moolapensis 148 2257 1 species 0 Natronomonas pharaonis 123 0 160 Halomicrobium 1 203135 2 genus 7 153 Halomicrobium mukohataei 0 1 species 57705 1073987 6 2 genus 1 0 114 Halorientalis 2648975 no rank 1 0 108 1932360 1 species 0 Halorientalis sp. IM1011 108 0 Haloferacales 1727 1 1644055 27 order 17 1 8 family 2 1644056 1040 Haloferacaceae 0 1 2 genus 60846 1 Halogeometricum 199 0 60847 1 species 0 198 Halogeometricum borinquense 129 0 genus 1 293431 293091 species 1 0 129 Haloquadratum walsbyi 1 genus 4 6 2251 Haloferax 710 0 0 213 Haloferax gibbonsii 35746 species 1 348 Haloferax volcanii 0 1 species 2246 1 species 2252 Haloferax mediterranei 143 0 family 7 5 1963271 1 Halorubraceae 542 0 126 0 1 genus 1644057 0 126 Salinigranum rubrum 755307 1 species 56688 10 3 genus 1 0 Halorubrum 221 Halorubrum lacusprofundi 102 0 1 species 2247 Halorubrum trapanicum 109 0 1 species 29284 15 2 genus 1209988 1 190 Halopenitus 0 0 Halopenitus persicus 175 1048396 1 species 2678336 no rank 1 0 118 0 halophilic archaeon DL31 118 756883 1 species Natrialbales 2049 0 order 20 16 1644060 1 2033 Natrialbaceae 0 23 family 19 1644061 1 0 214 Halopiger 387342 1 2 genus 1 387343 1 species 0 213 Halopiger xanaduensis 121871 3 genus 1 1 0 336 Haloterrigena 1 species 62320 248 Haloterrigena turkmenica 0 87 Haloterrigena daqingensis 0 1 species 588898 207 0 genus 1 1269201 0 207 2621923 no rank 1 0 Salinarchaeum sp. Harcht-Bsk1 207 1333523 1 species 0 340 Natrinema 1 88723 3 genus 3 143 0 1 no rank 2622230 1 species 406552 Natrinema sp. J7-2 143 0 0 Natrinema pellirubrum 194 69525 1 species 1 1 2 genus 63742 Natrialba 176 0 13769 species 1 0 175 Natrialba magadii 1 genus 2 203193 1 194 Halobiforma 0 species 1 229731 193 Halobiforma lacisalsi 0 1 genus 2 3 29287 Natronococcus 170 0 1 species 29288 Natronococcus occultus 167 0 142 0 1 genus 2256 1 species 44930 Natronobacterium gregoryi 142 0 1 353799 3 2 genus 0 231 Halostagnicola 1 species 353800 Halostagnicola larsenii 228 0 Methanomicrobia 7477 0 1 5 class 46 224756 order 26 94695 5422 0 2206 family 22 0 5135 2225 genus 2 0 324 2226 1 species 0 Methanococcoides methylutens 149 0 Methanococcoides burtonii 175 29291 1 species 318 0 genus 2 2175 2176 1 species 0 Methanohalophilus mahii 179 2177 1 species 0 139 Methanohalophilus halophilus 0 122 101191 genus 1 0 Methanomethylovorans hollandica 122 101192 1 species 180 0 genus 1 2321 180 Methanohalobium evestigatum 0 1 species 2322 180 0 1 genus 196136 species 1 39669 Methanosalsum zhilinae 180 0 Methanosarcina 3905 0 1 genus 13 2 2207 0 1032 Methanosarcina barkeri 2208 1 species 2209 species 1 0 Methanosarcina mazei 600 0 Methanosarcina lacustris 199 170861 1 species 768 0 4 no rank 2644672 species 1 1434103 278 Methanosarcina sp. WWM596 0 Methanosarcina sp. Kolksee 199 0 1 species 1434099 1 species 1434102 Methanosarcina sp. WH1 161 0 1434100 1 species 0 Methanosarcina sp. MTP4 130 2210 species 1 0 Methanosarcina thermophila 339 0 250 Methanosarcina horonobensis 418008 1 species 271 Methanosarcina acetivorans 0 1 species 2214 Methanosarcina siciliae 270 0 1 species 38027 0 Methanosarcina vacuolata 174 2215 1 species Methanolobus 106 0 2 genus 2 2220 1 420950 1 species 0 Methanolobus psychrophilus 104 1 family 4 1 143067 287 Methanosaetaceae 0 1 2 3 genus 2222 286 Methanothrix 0 1 species 2223 Methanothrix soehngenii 90 0 0 Methanosaeta harundinacea 194 301375 species 1 4 order 1 570264 1 198 Methanocellales 0 1 3 family 1 570265 Methanocellaceae 197 0 genus 2 570266 196 0 0 Methanocella arvoryzae 161 1175445 1 species 1175444 1 species 0 35 Methanocella conradii 4 15 order 2191 1 Methanomicrobiales 1852 0 family 1 196137 97 0 genus 1 2202 97 0 Methanospirillum hungatei 97 0 1 species 2203 0 Methanomicrobiaceae 692 1 2194 1 family 6 1 genus 230355 108 0 54120 species 1 0 Methanolacinia petrolearia 108 45989 genus 4 2 1 0 583 Methanoculleus 142 0 no rank 1 2619537 86622 species 1 0 Methanoculleus sp. MAB1 142 210 Methanoculleus bourgensis 0 1 species 83986 2198 species 1 0 229 Methanoculleus marisnigri 2 family 88404 391 0 0 391 Methanocorpusculum 2192 2 genus 1 1 83984 1 species 0 390 Methanocorpusculum labreanum Methanoregulaceae 668 0 1 5 family 1 1198451 475087 genus 1 0 217 1 species 475088 217 Methanosphaerula palustris 0 genus 3 1 395331 1 450 Methanoregula 0 0 Methanoregula boonei 129 358766 1 species 320 Methanoregula formicica 0 1 species 882104 0 7704 2283794 35 clade 2680 0 class 13 183939 2182 13 order 0 2680 0 1177 196117 7 family 977 0 genus 6 196118 73913 1 species 0 Methanocaldococcus vulcanius 77 17 Methanocaldococcus infernus 0 species 1 67760 0 330 Methanocaldococcus bathoardescens 1301915 1 species 1 species 83171 262 Methanocaldococcus fervens 0 2641196 no rank 1 0 116 0 Methanocaldococcus sp. FS406-22 116 644281 species 1 1 species 2190 175 Methanocaldococcus jannaschii 0 0 200 196119 1 genus 0 Methanotorris igneus 200 2189 1 species 1 6 family 2183 1 Methanococcaceae 1503 0 155862 1 genus 0 202 1 species 155863 Methanothermococcus okinawensis 202 0 1300 0 genus 4 2184 2188 1 species 0 115 Methanococcus voltae 0 228 Methanococcus aeolicus 42879 1 species species 1 39152 882 Methanococcus maripaludis 0 species 1 2187 Methanococcus vannielii 75 0 0 Methanobacteria 5024 1 183925 22 class 2 21 order 2158 5022 0 0 4883 2159 20 family 0 192 145260 genus 4 22 0 1 no rank 2631116 Methanothermobacter sp. CaT2 22 0 1 species 866790 145261 species 1 0 Methanothermobacter wolfeii 124 0 Methanothermobacter thermautotrophicus 20 145262 1 species 145263 1 species 0 Methanothermobacter marburgensis 26 1 genus 2316 162 0 2317 1 species 0 Methanosphaera stadtmanae 162 0 3854 Methanobrevibacter 2172 1 7 genus 1 752 0 2 no rank 2638681 256 Methanobrevibacter sp. AbM4 0 1 species 224719 0 Methanobrevibacter sp. YE315 496 1609968 1 species species 1 230361 399 Methanobrevibacter millerae 0 83816 species 1 0 349 Methanobrevibacter ruminantium 1940 Methanobrevibacter smithii 0 1 species 2173 Methanobrevibacter olleyae 413 0 1 species 294671 675 Methanobacterium 0 8 genus 1 2160 1 0 Methanobacterium congolense 182 118062 1 species 2162 1 species 0 Methanobacterium formicicum 85 877455 1 species 0 Methanobacterium lacus 123 species 1 59277 42 Methanobacterium subterraneum 0 115 0 no rank 2 2627676 1911685 1 species 0 44 Methanobacterium sp. MZ-A1 0 Methanobacterium sp. MB1 71 1379702 1 species 1 species 868131 Methanobacterium paludis 127 0 1 family 2178 139 0 genus 1 2179 139 0 1 species 2180 139 Methanothermus fervidus 0 16 clade 2283796 1547 0 0 48 1803510 clade 2 48 0 2 genus 379546 22 0 1 no rank 2633939 0 Aciduliprofundum sp. MAR08-339 22 673860 1 species 379547 species 1 0 Aciduliprofundum boonei 26 1 8 class 14 183967 1499 Thermoplasmata 0 0 1053 2301 7 order 1 family 1747776 122 0 1747777 genus 1 0 122 1 species 1673428 122 Cuniculiplasma divulgatum 0 148 0 family 2 46659 148 0 2 genus 2302 Thermoplasma acidophilum 64 0 1 species 2303 0 84 Thermoplasma volcanium 50339 1 species 376 0 1 no rank 1919231 Thermoplasmatales archaeon BRNA1 376 0 1 species 1054217 46630 family 1 0 78 1 genus 46631 78 0 82076 1 species 0 Picrophilus torridus 78 329 0 2 family 90142 genus 2 74968 329 0 231 Ferroplasma acidarmanus 0 1 species 97393 74969 1 species 0 98 Ferroplasma acidiphilum 1 1235850 5 order 1 0 Methanomassiliicoccales 338 0 241 1577788 family 2 1080709 1 genus 0 167 1 species 1406512 167 Candidatus Methanomassiliicoccus intestinalis 0 genus 1 1607807 74 0 1577791 species 1 0 Candidatus Methanoplasma termitum 74 2517203 family 2 0 96 2 genus 3 1291539 1 Candidatus Methanomethylophilus 96 0 1 species 1291540 93 Candidatus Methanomethylophilus alvus 0 100 0 no rank 1 1234666 1495144 species 1 0 methanogenic archaeon ISO4-H5 100 183980 class 8 0 807 807 0 order 8 2231 2232 8 family 0 807 1 genus 54260 66 0 54261 1 species 0 Ferroglobus placidus 66 genus 4 2233 592 0 species 1 1316941 Archaeoglobus sulfaticallidus 166 0 2234 1 species 0 186 Archaeoglobus fulgidus 0 214 Archaeoglobus veneficus 58290 1 species Archaeoglobus profundus 26 0 1 species 84156 0 149 Geoglobus 190818 1 genus 3 1 species 1 113653 40 Geoglobus ahangari 0 565033 1 species 0 Geoglobus acetivorans 108 0 Thermococci 2700 1 183968 40 class 1 2258 39 order 4 1 0 2699 Thermococcales Thermococcaceae 2695 0 9 family 38 2259 1 7 genus 2260 365 0 1 species 2261 126 Pyrococcus furiosus 0 29292 1 species 0 25 Pyrococcus abyssi species 1 1008460 Pyrococcus yayanosii 29 0 1 species 1609559 Pyrococcus kukulkanii 38 0 53953 species 1 0 Pyrococcus horikoshii 54 93 0 no rank 2 2629106 0 Pyrococcus sp. NA2 44 342949 1 species 1 species 1183377 Pyrococcus sp. ST04 49 0 1 2263 29 genus 11 0 Thermococcus 2282 1 species 55802 Thermococcus barophilus 99 0 0 486 2627626 no rank 6 246969 1 species 0 173 Thermococcus sp. AM4 122420 1 species 0 Thermococcus sp. P6 24 1042877 species 1 0 116 Thermococcus sp. 4557 0 Thermococcus sp. 5-4 58 2008440 1 species 0 63 Thermococcus sp. 2319x1 1674923 1 species 1 species 2016361 Thermococcus sp. EXT12c 52 0 species 1 1505907 119 Thermococcus eurythermalis 0 277988 1 species 0 39 Thermococcus thioreducens Thermococcus pacificus 49 0 1 species 71998 Thermococcus cleftensis 68 0 1 species 163003 0 121 Thermococcus siculi 72803 1 species 187878 1 species 0 138 Thermococcus gammatolerans Thermococcus kodakarensis 34 0 1 species 311400 0 Thermococcus profundus 40 49899 1 species 54077 species 1 0 71 Thermococcus barossii 1 species 342948 Thermococcus onnurineus 56 0 0 Thermococcus gorgonarius 128 71997 1 species 195522 1 species 0 Thermococcus nautili 36 Thermococcus paralvinellae 69 0 1 species 582419 0 Thermococcus radiotolerans 83 187880 1 species 0 47 Thermococcus guaymasensis 110164 1 species 0 Thermococcus chitonophagus 30 54262 1 species 180 Thermococcus sibiricus 0 1 species 172049 0 Thermococcus piezophilus 38 1712654 1 species 53952 1 species 0 87 Thermococcus peptonophilus 2264 1 species 0 Thermococcus celer 113 1 species 2265 Thermococcus litoralis 140 0 genus 1 83867 39 0 0 Palaeococcus pacificus 39 971279 1 species 0 name 1 0